LOCUS       DATGBK010000001         3142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_185043, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000001 DATGBK010000000
VERSION     DATGBK010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3142
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185043"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..297)
                     /locus_tag="VKJ77_00005"
     CDS             complement(25..297)
                     /locus_tag="VKJ77_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43689.1"
                     /translation="MHQDVEVGDYLLTINAEPKCDPSDAEKIIGFNVRVLVTRHDGTP
                     IHGSMHAEDSGELTGNHGPYVTMAEAIAHGEAWGRHFVARVLGGAV"
     gene            complement(445..1725)
                     /locus_tag="VKJ77_00010"
     CDS             complement(445..1725)
                     /locus_tag="VKJ77_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HMC43690.1"
                     /translation="MIKHLVASLALTLTTFSLPLLAHAAANDDPLVARGAYLAKVGDC
                     VACHSAPKGKPFAGGLPMTTPMGNIYTTNITPDPDTGIGKWSEEDFEKALRQGVGKDG
                     HNLYPAMPYTSYVKVRDDDVKALYAYFMKGVAPVNQANRPSDIPFPLNMRWPLKFWNM
                     VFLDKGVYRDKDGKDVGWNRGAYLIQGLGHCSACHTPRGIAFQEKALDESGSAWLTGG
                     VLDGWFASNLTGEQNVGLGRWSDADLTTFLKTGANAHASAFGSMTDVINHSTQGMSDQ
                     DLAAMSAYLKSLPAAGGTNAPAYAYDPKATAALLQHPANDAGAKVYTAYCMHCHGVDG
                     HAFAPLLAPLAGNPNVMEKDASSLINVTLNGTHDLVIQGIPAAYPMPKYAPVLNDQQI
                     ADVLTFIRAGWNNGAPAVGAADVAKLRKSTQASQ"
     gene            complement(1737..>3142)
                     /locus_tag="VKJ77_00015"
     CDS             complement(1737..>3142)
                     /locus_tag="VKJ77_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC43691.1"
                     /translation="PGVLQVIRIDNGVAVIGDHTWAAKRGAAALDITWNEGRGADFST
                     AKVVQQLADASKRDGAVARKDGDVKKGFNDAKTRVDAVYQQPFLAHATMEPVNCTVSV
                     RADGCDIWVGTQVPTRAVDTAVKITGLTADKITVHNHLLGGGFGRRLETDFIGQALKV
                     GKQVGTPVKVTWTREEDVQHDMYRPYYYDVISAGLDANGRPVAWQHRIVGSSIMARFA
                     PPAFKNGLDPDAVEVAADLPYDLPNQFIDYVRQEPMDIPTAFWRGVGPTRGTFVVESF
                     MDELATQAKVDPVKYRHDLLGKTPRAQNVLDVAAREAGWGNTPPKGQGRGVSVMHAFG
                     SFFGMVVDVTVNGDGEVAVNRVVCVVDCGMVVNPNTIEAQIQGGIIFGITAALYSEIT
                     IKDGRVEQSNFTDYRMLRIDQAPPIEVHIVKSGEAPGGIGEPGTAALAPALTNAIFAA
                     TGKRLRQLPVGRQLQSA"
BASE COUNT          596 a          992 c          924 g          630 t
ORIGIN      
        1 aggagccggc gttaaatagg gaagctagac agctccgccc aatacgcgag cgacgaagtg
       61 tctcccccat gcttcgccgt gagcaatggc ttccgccatt gtgacgtagg gcccgtgatt
      121 accggtcaac tcgccagaat cttccgcgtg catcgaaccg tgaatcggcg ttccgtcatg
      181 gcgagtcaca agcacgcgca cgttaaaacc aataatcttt tccgcgtcag acgggtcgca
      241 ttttggctcg gcatttatag tcagaaggta gtcgccaact tcaacgtctt gatgcatggc
      301 cgtctccctg ttcgtcgagg agtttcatta tgaacgcgaa cgccgtcctg acgatgtgtt
      361 tacgcatagc ggcggcggac tagaaaatcc accgccgctt tcgccaaggc gccaaggcgc
      421 tgtggcacta agccctgtaa caacttactg cgatgcctgc gtgctcttgc gcagcttcgc
      481 gacatcagcc gccccgacag cgggcgcacc gttgttccat ccagcgcgaa tgaaagtgag
      541 cacgtcggcg atctgctgat cgttgagcac cggcgcgtac ttgggcatcg gatacgcggc
      601 ggggatgcct tgtatcacga ggtcgtgggt gccgttcagc gtgacgttga tcagcgacga
      661 cgcatccttc tccattacgt tcggattgcc agccaacggc gcaagcagcg gtgcgaacgc
      721 atggccgtcc acgccatggc agtgcatgca gtacgcggta tacaccttcg ccccagcatc
      781 attggccgga tgttgaagca gcgccgcggt cgccttcgga tcataggcgt acgccggagc
      841 gttcgtgccg cccgccgccg gcaacgactt cagatacgcc gacatggcag ccaggtcctg
      901 atcgctcatg ccctgcgtgc tgtggttgat cacatccgtc atggacccga acgccgacgc
      961 atgcgcgttc gctccagtct tcaggaacgt ggtcaagtca gcatccgacc agcggcccag
     1021 tccgacgttc tgctcgcccg tcaggtttga cgcaaaccag ccgtcgagca caccacctgt
     1081 gagccacgcg ctgccgcttt catcgagcgc cttttcctgg aacgctatac cgcgaggcgt
     1141 atggcacgcg ctgcaatggc ccagaccctg aatcaggtaa gcaccgcgat tccacccaac
     1201 atccttgccg tccttgtcgc gataaacacc tttatcgagg aacaccatgt tccagaactt
     1261 gagtggccag cgcatgttca atgggaacgg gatatcggat ggacggttcg cctggttcac
     1321 cggtgcaacc cccttcatga agtacgcata gagcgccttc acatcgtcgt cgcggacctt
     1381 cacatacgac gtatagggca ttgccggata gaggttgtga ccgtccttcc ccacgccctg
     1441 gcgcaacgcc ttttcgaagt cctcctcgct ccatttacca atacccgtat cggggtccgg
     1501 cgtgatgttg gtcgtgtaga tattccccat gggtgtggtc atcggcaggc cgccggcgaa
     1561 cggcttgccc ttgggcgcgg aatgacaggc cacgcaatcg cccaccttcg cgagataggc
     1621 accgcgggca accagcggat cgtcgttcgc agcggcatga gccagcaagg gcaggctgaa
     1681 cgtggtgagc gtaagcgcaa gggaggcaac aagatgtttg atcattgtgt gttccctcat
     1741 gcgctttgca gttgacggcc aacgggcaac tgccgtaagc gcttgccagt ggcagcaaaa
     1801 atcgcgttgg tcagcgcggg agcgagcgct gccgtacccg gttcgccgat gcctccgggc
     1861 gcctcgccgc tcttcacgat atgcacttcg atgggcggtg cctgatcaat ccgcagcatc
     1921 cggtaatccg tgaagttgga ttgttcgacg cggccgtcct tgatcgtgat ctcgctataa
     1981 agcgctgcgg tgatgccgaa gataatgcca ccctggatct gcgcttcaat ggtgttcgga
     2041 ttgaccacca tgccgcaatc caccacgcag accacgcggt tcacggccac ttcaccgtcg
     2101 ccgttcacgg tcacatcgac caccatgccg aagaagctgc cgaacgcgtg catgaccgat
     2161 accccacgtc cctggccctt tggtggcgtg ttgccccagc cggcttcacg ggcggcgacg
     2221 tcgagcacgt tctgcgcgcg cggtgtcttg cctagcaggt catggcgata cttcaccgga
     2281 tcgaccttcg cttgcgtggc cagctcgtcc atgaaactct caaccacgaa ggtgccgcga
     2341 gtcggaccaa caccgcgcca gaacgcggtg ggtatgtcca tgggctcctg gcgcacatag
     2401 tcgatgaact gattcgggag gtcgtacgga aggtcggcag caacttccac cgcatccggg
     2461 tcaaggccgt tcttgaatgc aggtggagcg aaccgcgcca taatggacga ccccacaatg
     2521 cgatgctgcc acgcgaccgg gcggccattg gcatcgaggc cggcggagat gacgtcgtag
     2581 tagtacgggc gatacatgtc gtgctggacg tcctcctcgc gcgtccacgt gaccttcacg
     2641 ggcgtgccga cctgtttgcc gaccttcagc gcctggccga tgaaatcggt ttccagccgg
     2701 cgtccaaagc cgccgccgag caagtggttg tgcacggtga tcttgtcggc ggtaagaccg
     2761 gtgatcttca cggcggtatc cactgcacgc gtgggcactt gcgtgccgac ccagatatcg
     2821 cagccatcag cgcgcacaga caccgtgcag ttcaccggct ccatggtggc gtgcgcgagg
     2881 aagggttgct ggtacacggc gtcaacgcgt gtcttggcgt cgttgaagcc cttcttcacg
     2941 tcgccgtcct tgcgcgccac cgcaccatcg cgcttcgatg catcggcaag ttgctggact
     3001 accttggcag tcgaaaagtc cgcaccgcgg ccttcgttcc atgtgatatc aagcgctgcc
     3061 gcgccgcgct tggcagccca cgtatggtcg ccgatcacgg ctacgccgtt gtcgatccgg
     3121 atcacctgga gaacgccggg aa
//
LOCUS       DATGBK010000002         1862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_138791, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000002 DATGBK010000000
VERSION     DATGBK010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138791"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VKJ77_00020"
     CDS             <1..220
                     /locus_tag="VKJ77_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43692.1"
                     /translation="AEFELADGSIVTLGESAEAIEAAKQPEVAPAKAARKRAKSKKTE
                     DATAANDTDAPVETAEPAQDETMQEDER"
     gene            436..1644
                     /locus_tag="VKJ77_00025"
     CDS             436..1644
                     /locus_tag="VKJ77_00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HMC43693.1"
                     /translation="MNQADLQAKPWQLSERARKLTSSAIREILKVTERPEVISFAGGL
                     PSPATFPVEEMRLACDRILRDSPAAALQYSATEGYLPLREWVAQRYSVNGASIRPSQV
                     LITTGSQQALDLLGKVLIDPASRVLVETPTYLGALQSFSMYEPNYVQVPTDEHGLIPS
                     SLDATLTANARLLYAQPNFQNPTGRRLSLERRTALAAFAQRAGFPVIEDDPYGALDYA
                     GAPLPTMLSMAPDHIVHLGSFSKVLSPGMRVGYIIAPEELHFKLVQAKQATDLHTPSL
                     TQRIVHEVVKDGFLETHIPKIRALYRDQCAAMLASLEQHMPAGVEWNRPEGGMFVWVK
                     LPKHVDKQIDTMKLLEQAIEQHVAFVPGGPFFANEAEHNTLRLSFVTVPPAKIDEGIA
                     KLGALIRAMV"
     gene            1730..>1862
                     /locus_tag="VKJ77_00030"
     CDS             1730..>1862
                     /locus_tag="VKJ77_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004186314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC43694.1"
                     /translation="MAQLNVYDKLKELGIELPTAGAPAAAYVMSAQSGNTVYLSGHIA
                     "
BASE COUNT          385 a          607 c          556 g          314 t
ORIGIN      
        1 cgcggagttt gagctggcgg atggttccat cgttacgctc ggtgaatcgg cggaagcgat
       61 cgaagcggca aagcagccag aggtcgcgcc ggccaaggca gcccgcaagc gcgcgaagag
      121 caagaagacc gaggacgcta ccgcagcgaa tgacacggac gcgcccgtgg aaacggccga
      181 gccggcgcaa gacgaaacaa tgcaggaaga cgagcgctag aacatccggc gacgggcatt
      241 tgtgcttcgc gttggcactg ggttttgacc atcgcccccg accagcggag cacgaggcac
      301 gccataataa gcgtccgccg ccgctcgcca attacgctga atcgcagtac gcagggcctt
      361 attcgaagca ccgcgcaact ttttatcaac ccgcatacgc aatagaaccg cttaccgaga
      421 ccaaccgagg accccatgaa tcaagccgac cttcaagcca agccgtggca actttccgaa
      481 cgtgcgagaa agctcaccag ttcggccatt cgcgaaatcc tgaaggtcac cgagcggccc
      541 gaggtcattt cgttcgcggg cggattaccg tctccggcta cgtttcccgt cgaggaaatg
      601 cgcttggcgt gcgaccgtat cctgcgtgac agccctgccg ccgcgctgca atacagcgcc
      661 acggaaggtt acctgccgct gcgcgaatgg gtcgcgcaac gctactcggt caacggcgcg
      721 tcgatccggc cgtcgcaagt gctgatcaca acgggctcgc agcaagcact cgacttgctc
      781 ggcaaggtgc tgatcgatcc cgccagccgc gtactggtcg aaacgccgac gtatctcggt
      841 gcgctgcagt cgttctccat gtatgagccg aactacgtgc aagtcccaac cgacgaacac
      901 ggcttgatcc cgtcctcgct cgacgccacg ctgacagcca atgcgcgcct cttgtacgcg
      961 cagccgaatt tccagaatcc gacgggccgt cgcctgtcgc tggagcgccg caccgcgctg
     1021 gccgcctttg ctcaacgcgc cggcttcccg gtgatcgagg acgatccgta cggcgcgctc
     1081 gactacgcgg gcgcaccgct accgaccatg ctgtcgatgg cgcccgatca catcgtgcac
     1141 ctgggttcgt tctcgaaggt cctgtcgccc ggcatgcgcg tgggctacat cattgcgccc
     1201 gaagaattgc acttcaagct ggtgcaggcg aagcaggcga ccgacctgca tacaccgagc
     1261 ctcacgcaac gcatcgtgca tgaggtcgtc aaggacggct tcctcgagac gcatatcccg
     1321 aagatccgcg ctctgtatcg tgatcaatgc gcggccatgc tggcatcgct cgaacagcac
     1381 atgccggcgg gcgttgaatg gaaccgtccg gaaggcggca tgttcgtgtg ggtgaagctg
     1441 ccgaaacacg tcgataagca gatcgataca atgaagctgc tcgagcaggc aatcgagcag
     1501 cacgtcgcgt tcgtgcccgg cggcccgttc ttcgcgaatg aagcggaaca caacacgctg
     1561 cgcctgtcgt tcgtgaccgt gccgccggcg aagatcgacg aaggtatcgc caagctcggc
     1621 gcgctgatcc gcgcgatggt ctgatctcgt tgcaatgcaa gcgtgccgcg gcgggacgac
     1681 cgcctcggtg cgctctcgcg tcatcctttc cacatttagg gaatacccca tggcccaact
     1741 gaacgtttac gacaagctga aggaactcgg catcgaattg ccgacggccg gcgcacccgc
     1801 cgccgcctac gtgatgagcg cgcaaagcgg caacacggtt tatctgtccg gccacatcgc
     1861 ga
//
LOCUS       DATGBK010000003         1948 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_254438, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000003 DATGBK010000000
VERSION     DATGBK010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1948
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254438"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VKJ77_00035"
     CDS             <1..242
                     /locus_tag="VKJ77_00035"
                     /inference="COORDINATES: protein motif:HMM:NF027400.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PilW family protein"
                     /protein_id="HMC43695.1"
                     /translation="SFSVEAAAISQDRWSLVVAVDVCLVVRGDSPSATARPRYADCDG
                     ASIVSADGRIRQVFRRRIALRNVANAPNSPGAAST"
     gene            239..778
                     /locus_tag="VKJ77_00040"
     CDS             239..778
                     /locus_tag="VKJ77_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43696.1"
                     /translation="MKKHLCLRSRTRGIALPIVLLISSMLLVTAAAWLEAALVSARTA
                     TNLGERVQAFHSADSALIRCTGIALDSLPELKSLTGPLAAEPNKWRLKASFEGASASA
                     VMPFASWPYGIRPPQCLIEVWPARANDQAGAVLITARGFGRRADNESWLQQEIEMGES
                     GVVRHWRRIVAKPFQEGSL"
     gene            775..1212
                     /locus_tag="VKJ77_00045"
     CDS             775..1212
                     /locus_tag="VKJ77_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HMC43697.1"
                     /translation="MTTIDKIDKGFTLLELMITLGVAAIIATFAMPVYREQVARGHRL
                     DAVTALYRAAQYVESTRTVSSNDSVAKLPVGFDQAPALGTAVYVLRLLGESEQNGGYS
                     IEAQPVDANDMCGIYSLDATGVRSNRSVEKLTPPKVAACWSGK"
     gene            complement(1262..1765)
                     /locus_tag="VKJ77_00050"
     CDS             complement(1262..1765)
                     /locus_tag="VKJ77_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3318 domain-containing protein"
                     /protein_id="HMC43698.1"
                     /translation="MSHNDDTFKAQKRATAHKLSTPHMRALRKELLIARADVERMELA
                     QASADLRYKFSHFSVLNLLMPGRRKRGRGAGGSGFMSRLGGLSGLFSGAGGLGLLLKQ
                     YPVVSSLASLVLTKPVRSRLLASAKPILKWGGLGLVGWEAYRVWQQIKSSPDKPLSPD
                     AAVDPDA"
BASE COUNT          354 a          576 c          633 g          385 t
ORIGIN      
        1 catcgttctc ggttgaggca gcggcgatct cgcaggaccg ctggtcgctg gtcgtcgccg
       61 tggatgtgtg tttggtcgtt cgaggagaca gtccgagcgc gacggctcgc ccgcgttatg
      121 ccgattgtga tggtgcgtcg atcgtttccg ccgacggtcg catccggcaa gttttccggc
      181 gccgcatcgc actgcgcaac gtagcgaacg cgccgaacag tccgggagcg gcatcgacat
      241 gaaaaagcat ctctgcttgc gtagtcgcac acgcggcatt gcgttgccga tcgtcctgct
      301 gatctcgtcg atgctactgg tcaccgccgc tgcatggctt gaggcggcgc tcgtcagcgc
      361 gcgaacagca accaatctgg gtgagcgcgt gcaggcgttt cacagcgccg acagcgcgtt
      421 gatccgctgc accggcatcg cgcttgactc cctgcccgag ctgaaaagcc tcaccggtcc
      481 gcttgccgct gaaccgaata aatggcggct gaaggcttcg ttcgaaggtg catcggcgag
      541 tgcggtgatg ccgtttgcat cgtggccata cgggatacga ccgccccaat gccttatcga
      601 agtgtggccg gcgcgggcta acgatcaagc cggcgctgtt ttgatcaccg cacgcggttt
      661 cggccggagg gcggacaacg agtcgtggtt acagcaggag atcgagatgg gtgaaagcgg
      721 cgtcgtgcgg cactggcgac gcattgtcgc aaagccgttt caagagggtt cgctatgacc
      781 acgatagaca agatagacaa gggcttcacg ctgctcgaac tgatgatcac gctcggcgtg
      841 gcggcgatca tcgcgacatt cgccatgccg gtttatcggg aacaggtggc aagagggcat
      901 cggctggatg cggtgaccgc gctttatcgc gccgctcaat atgtggagag cacgcgaacg
      961 gtgtcgagca atgactcggt tgccaagctg cccgttggct tcgatcaagc gcccgcgctg
     1021 ggcacagctg tctacgtgtt gcgtctgctc ggcgagtcgg agcagaacgg cgggtattcg
     1081 attgaagcgc agccggtcga cgcgaacgac atgtgcggga tctattcgct ggacgcgacg
     1141 ggcgtcaggt caaatcggtc ggttgaaaaa ctcacgccgc ctaaagtggc ggcgtgctgg
     1201 agcggcaaat gagcgaattg aacccacgca ccgtgcagtc cggatgcccg ggcctggcgt
     1261 gtcaggcgtc cggatcgacg gcagcatccg gggacaacgg cttgtccgga ctcgacttga
     1321 tctgttgcca cacgcgatac gcttcccacc cgaccaggcc cagaccgccc cacttgagta
     1381 tcggtttcgc gctcgctagc agccgtgagc ggacgggttt cgtgagcacc agcgaagcaa
     1441 gagagctcac gacgggatat tgcttcagca acagcccaag gccacccgcg ccactgaaca
     1501 ggccgctcag tccgccaaga cggctcatga acccgctgcc tcccgctccc cggccgcgtt
     1561 tgcggcgccc cggcatcagc aaattaagga cactgaaatg cgagaatttg taacgcagat
     1621 cggcgcttgc ctgcgcgagt tccatgcgct cgacgtccgc ccgcgcgatc agcagttcct
     1681 tgcgcaatgc gcgcatgtgg ggtgtgctca gcttgtgcgc ggtcgctcgc ttctgagctt
     1741 tgaaggtgtc gtcgttgtga ctcatggcgt ggcgggctct tggaaagtcg tcgatgaata
     1801 ctgttttgtc gtactcgtac tactggggcg tcgccatgag gtgagccctt cgcgcgcatc
     1861 acttgaacgt gtcgcggtcc tttttgaact cggcgatcgt gctgtcgaag acgttagggg
     1921 cattgatcag gccggcgcgc gcgcgaac
//
LOCUS       DATGBK010000004         1985 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_300730, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000004 DATGBK010000000
VERSION     DATGBK010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300730"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1834
                     /locus_tag="VKJ77_00055"
     CDS             <1..1834
                     /locus_tag="VKJ77_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006046922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC43699.1"
                     /translation="AIQLKLDVLDVYRRNFVPADAFPYRAAAGALLDSGNYQEALKRS
                     LADGGYDELKARREAARKEGRLYGIGFAAIVEPSVSNMGYITTVMPAEARKKAGPKNG
                     AIASATVSVDLLGGVVVTVASTPAGQGHMTVCAQVVADVLGLAPHEIVVNVEFDTHKD
                     AWSVASGNYSSRFAGAVAGTVHLAAVRMRDKLARILSSQLRCKPCDICFEGGRVYAKG
                     AEDRAMPFGRVASNAPHWAPALLPEGEEPGLRETVFWTPENMDAPDEQDRINTSAAYG
                     FAFDMCGVEVDRATGRVRIDRYVTAHDAGTLLNPALADGQIRGAFAQGLGAALMEEFR
                     YGADGSFQSGTLADYLMPTTCEVPDPVIIHLETPSPFTPLGAKGLGEGNNMSTPPCIA
                     NAVADALGADDIRLPLTPSKVMALVGIDDPEPSRPEFRETQQKKPVLPGGKALTAQGS
                     VDLAASPEAIFAVLLDPNALAKVIPGCHALEAKGENAYRADVTVGVGMIKARFEAEIT
                     LSDLDPPHRLRLAGAGMSSLGSARGNGLVELTPVGTGTRLTYDYEAQVSGKVAAVGAR
                     MLEGAAKVVLRQLFESLGRQAAGKPVKTGGSWLVRLVARFRRKS"
     gene            1831..>1985
                     /locus_tag="VKJ77_00060"
     CDS             1831..>1985
                     /locus_tag="VKJ77_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009240915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HMC43700.1"
                     /translation="MKPAPFDYLRAVSTHDALEALAQTGEEARILAGGQSLMAVLNMR
                     LAQPRVLV"
BASE COUNT          344 a          589 c          690 g          362 t
ORIGIN      
        1 cgcgatccag ttgaagcttg atgtgctgga cgtgtatcgg cgcaattttg ttcccgccga
       61 tgcttttccc tatcgcgcag cggccggtgc gttgctggac tcgggcaatt atcaggaagc
      121 gttgaagcgc tcgctcgccg acggcggtta cgacgagctc aaagcgcgcc gcgaagctgc
      181 gcgcaaggaa ggccgtctgt acggcatcgg ctttgcggca atcgtcgagc cgtcggtatc
      241 gaacatgggt tacatcacga cggtgatgcc cgccgaagca cgcaagaagg cgggacctaa
      301 gaacggtgct atcgcgagcg cgacggtcag tgtcgacctg cttggcggcg tggtggtgac
      361 ggtggcgtcg acaccggccg ggcaggggca tatgaccgta tgcgcgcaag tggtggcgga
      421 cgtgctcggg ctcgcgccgc acgagatcgt ggtgaacgtg gagttcgata cgcacaagga
      481 cgcgtggtcg gtggcgtcgg gcaattattc gagccgcttt gctggagctg tcgccggcac
      541 ggtgcatctc gcggccgtgc ggatgcgcga caagctggcg cgcatcctgt cgtcgcagct
      601 tcgctgcaag ccttgcgaca tctgcttcga gggcggccgc gtgtatgcaa agggcgccga
      661 agaccgtgca atgcccttcg gccgcgtagc cagcaacgca ccgcattggg cgcctgcgtt
      721 gttgcctgaa ggcgaagagc cgggtctgcg cgagacggtg ttctggacgc cggaaaacat
      781 ggatgcgcct gatgagcagg accgcatcaa tacatcggcc gcttatggtt ttgccttcga
      841 tatgtgcggt gttgaagtgg accgtgcaac ggggcgcgtg cggatcgacc gctatgtgac
      901 cgcgcacgat gccggcacgt tgctgaaccc ggcgcttgcc gacggccaga ttcgcggcgc
      961 gttcgcgcag gggctcggag cggcgctgat ggaagagttt cgctatggcg ccgacggcag
     1021 ttttcagtcc ggcacgctag ccgattacct gatgccgaca acctgcgaag tgcccgatcc
     1081 ggtgatcatt catctggaga cgccatcgcc tttcacgccg ctgggcgcca aaggactggg
     1141 cgaaggcaac aacatgagca cgccgccgtg catcgcgaat gcagtggccg acgcgctcgg
     1201 tgccgatgac atccgtttgc cgctcacgcc ttcgaaggtg atggcgctgg tcggtatcga
     1261 tgacccggag ccttcgcggc ccgagttccg tgagacacag cagaagaagc cggtcttgcc
     1321 cggcggcaaa gcgctgaccg cgcaaggcag cgtggatctc gctgcatcgc cggaagcgat
     1381 ctttgcggtc ctgctcgacc cgaacgcgct cgccaaggtg attcccggtt gtcacgcgct
     1441 tgaagcgaag ggcgagaacg cgtatcgcgc ggatgtgacc gtaggcgttg ggatgatcaa
     1501 ggcgcgcttc gaggcggaga tcacgctgtc cgatctcgat ccgccgcacc ggctgcggct
     1561 tgctggcgca ggcatgtcgt cgcttggcag cgcgcgtggc aatggtctcg tcgaactcac
     1621 acccgttggt accggcacgc ggctcaccta cgactacgag gcacaggtct cgggcaaggt
     1681 cgcagctgtg ggcgcacgga tgcttgaggg cgcggcgaag gtcgtgttgc gccaactgtt
     1741 cgaatcgctg ggacgtcagg cggcgggcaa gcccgtaaaa accggcggtt cgtggctcgt
     1801 ccggctcgtt gcacgcttca ggagaaagtc atgaagccgg cgccattcga ttatctgcgc
     1861 gcggtttcca cgcacgacgc gctcgaggcc ctcgcgcaaa ccggcgaaga ggcacgcatt
     1921 ctcgcaggcg gccagtcgct gatggccgtg ctgaacatgc ggcttgcgca accgcgggta
     1981 ctggt
//
LOCUS       DATGBK010000005         4698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92594, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000005 DATGBK010000000
VERSION     DATGBK010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4698
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92594"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..503)
                     /gene="gudD"
                     /locus_tag="VKJ77_00065"
     CDS             complement(<1..503)
                     /gene="gudD"
                     /locus_tag="VKJ77_00065"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068871.1"
                     /note="catalyzes the formation of
                     5-keto-4-deoxy-D-glucarate from glucarate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HMC43701.1"
                     /translation="MSTNPSVSTAANATPTVTELRVVPVAGRDSMLLNLSGAHGPFFT
                     RNIVILRDSAGHTGVGEVPGGESIRKTIDDARPLVVGQSIGNLHAVLNTTRKQFADRD
                     AGGRGTQTFDLRTTIHAVTGLEAALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFY
                     IGDRNKT"
     gene            complement(547..1794)
                     /locus_tag="VKJ77_00070"
     CDS             complement(547..1794)
                     /locus_tag="VKJ77_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43702.1"
                     /translation="MFIANYIDRVNIGFVSTHMQTDLGIGAAAYGLGSGLFFIGYALF
                     EVPSNVLMARFGARAWLTRIMFTWGLVAGAMAFTWNDTSFYVMRFLLGVAEAGFFPGV
                     VYYFTQWLPQKERGKAVAIFLGGSALASVLSGPVSGALLSIRGFGLHGWQWMFLVEGL
                     FSILLCGVSWFMLKSHPRDAKWLTAQEQQALSTAIAREQAEREAAGNAHLPITKLLKD
                     PQIVLFCVLYFAIQLTIYAATFWLPTIIRKMGGLSDFQVGLYNAVPWLIAMFAMYCFA
                     MLSAKWRFQQAWLALALVIAACGLFASTSANPVFSFVAICFSAIGFKAAASLFWPLPQ
                     GYLDVRVAAGVIALINSVGNLGGFFAPAAFGYLQQHTGSISGGLYGLGIASIIAAVAA
                     FFAKDRLTGRPEHATEPNPTRAA"
     gene            complement(2314..3057)
                     /locus_tag="VKJ77_00075"
     CDS             complement(2314..3057)
                     /locus_tag="VKJ77_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HMC43703.1"
                     /translation="MVESLTSVVTPRRARNLAESVFDYVIEQIESAALKPGDKLPTEA
                     KLMVTLGVSRTVVREGISRLQANEVIETRHGIGSFVLEPRREKLGIDMVPATTLRDVL
                     SVLELRISLETECAGLAAQRAQPEDLVRMRAALDAIEATSRNGSDSVAADLQFHIALA
                     QATGNRYFVDILTQMGTALIPRNRIDSAGIAKADPKAYVSLVNLEHESILEAITRRDA
                     ESARAAMRMHLSNSRERLRRANQSSEAAG"
     gene            complement(3358..3645)
                     /locus_tag="VKJ77_00080"
     CDS             complement(3358..3645)
                     /locus_tag="VKJ77_00080"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HMC43704.1"
                     /translation="MPRLVPLDHESAQFLLTERKPKFFKALQFEILDLDPEDARCAGE
                     VRAQLASAGTPIGPYDVLIAGQALARSLTLVTHNMREFQRASGLSVEDLEN"
     gene            4077..>4698
                     /locus_tag="VKJ77_00085"
     CDS             4077..>4698
                     /locus_tag="VKJ77_00085"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HMC43705.1"
                     /translation="MFDIPLQGLNSMQITKSGVERGVAGAQHTEQAVRPAFRYDINGL
                     RAWAVLPVVLFHFGIPGFSGGFVGVDVFFVISGFLMTGIVVSALERDRFSLLDFYLSR
                     AVRILPALLALCAVLLVVGWFWLVRVDYRALSLNVVSALTFVSNVLFWKRSGYFDTAS
                     HENWLLQTWSLSVEWQFYLLLPLAAAFAWRWRRKAGVCVLLAAVGAA"
BASE COUNT          879 a         1344 c         1476 g          999 t
ORIGIN      
        1 tcggtcttgt ttctatcgcc gatataaaac agatagccga gcatttcaac ttcatcgcgt
       61 tgctggcctt cgcccagcag cgcggcgaca ggcacgccca gatgctggcc cagcaagtcg
      121 agcaatgcgg cttcaagtcc ggtcacggca tggatggtcg tgcgcaggtc aaaggtctgc
      181 gtgccgcgtc cgcctgcatc gcgatccgcg aattgtttgc gtgtggtgtt gagcacggcg
      241 tgcagattgc cgatcgactg gccgacgacg agcggacgcg cgtcgtcgat agtcttgcgg
      301 atgctctcgc cgcccggcac ttcacccacg cccgtgtgcc ccgcgctgtc acgcaggatc
      361 acgatgttgc gcgtgaagaa cgggccgtgc gcgccgctca ggttcagcaa catgctgtcg
      421 cggccggcaa ccgggaccac gcgcagttcg gtgacggtgg gtgtggcgtt cgcggcggtt
      481 gaaacgcttg ggttcgtgga catggacgtg gtcagtgtga gttgattggg gctcgcgagg
      541 agacgcttaa gcggcgcgag ttggattcgg ctcggtggcg tgttccgggc ggccggtcag
      601 ccggtccttc gcgaaaaacg cggcaacggc cgcgatgatc gacgcaattc ccagcccata
      661 caaaccgccc gagatcgagc ccgtgtgttg ttgcagataa ccgaacgccg ccggcgcaaa
      721 aaatccgccc agattgccga cggagttgat cagcgcgatc acgccggccg ctacgcgtac
      781 atcgaggtat ccctgtggca gcggccagaa cagcgacgcc gccgctttga atccgatcgc
      841 agaaaagcag atggcgacga acgaaaagac cggattcgcc gacgtcgatg caaacagtcc
      901 gcaggcggca atgaccagcg cgagcgcgag ccaggcttgc tggaagcgcc atttcgccga
      961 caacatcgcg aagcagtaca tcgcgaacat ggcgatcagc cacggcacgg cgttatagag
     1021 gccgacctgg aaatcgctca ggccgcccat cttgcggatg atggtcggca gccagaacgt
     1081 cgctgcatag atagtcagct ggatcgcgaa atacagcacg cagaacagca cgatctgcgg
     1141 gtctttcaac agttttgtga tcggcagatg cgcattgccg gctgcttccc gctccgcctg
     1201 ttcgcgggca atagcggtgc tcagcgcctg ttgttcttgt gccgtgagcc atttggcatc
     1261 gcggggatgg gacttgagca tgaaccagct tacgccgcac agcaggatcg aaaacaggcc
     1321 ttcgaccagg aacatccact gccagccatg caggccgaaa ccgcgtatcg agagcagcgc
     1381 gcctgacaca ggccctgata acaccgacgc caatgccgag cctcccagaa agatcgcgac
     1441 tgccttgccg cgctcctttt gcggcagcca ctgcgtgaag taatacacca cgcccgggaa
     1501 aaaaccggct tcggccacgc ccagcaggaa ccgcatgacg tagaacgacg tgtcgttcca
     1561 ggtgaaggcc atcgcgcccg cgaccaagcc ccacgtgaac atgatccgcg tgagccacgc
     1621 gcgtgcgccg aagcgcgcca tcaacacatt cgacggcact tcaaacagcg cgtagccgat
     1681 gaaaaacagg ccgctcccca acccgtaggc cgccgcgcca atccccaggt ccgtctgcat
     1741 atgcgtgctg acgaagccga tgttcacccg gtcgatgtag ttcgcgatga acatgatcag
     1801 gaaaagcggc agcacgtggc gcttaacttt tgaggccgcc gatgtcagcg cgtcggatgt
     1861 cgatagggcg agatcgggtg tcacaaattc atctccggat ggcgaccggt cagtcccagg
     1921 ccgtcagcgc gaacgctcat gcggttcggc gatagcgagc aagctcgcaa ttttcaacgt
     1981 gagatacgtt gtctgatgac attctaagag ttctacgagg tgtgtaaaaa tgggtgttaa
     2041 ccctttattg cgacgtaatt attgatggat agggtggtat ttctgtcaat cggtgtgaca
     2101 ggattatgaa ttaaagtcgg acgtcagaca agttgagtgg tgctgcgaga tttgctgctg
     2161 gatgggtggg cgcctgctga tgtggctgca ggcaccctgt ctgcgagatc gatgggttgg
     2221 cgcttggctc agtggttcgc ccaggttatg ccaactcggg cgcctcggcc atctccgctg
     2281 gcgacaaatg agcgggtgcc atgtggggcg ctttcagccg gccgcttcac tcgactgatt
     2341 ggctcggcgc aagcgttccc ggctattcga caaatgcatg cgcatggcgg cacgcgcgct
     2401 ttcggcgtcg cgccgcgtaa ttgcttcgag aatgctctcg tgctcaagat tgacgagcga
     2461 gacgtacgct ttcggatcgg ctttcgcgat ccccgctgaa tcgatgcggt tgcgcgggat
     2521 cagggcggtg cccatctggg taaggatatc gacgaaatag cggtttccgg tcgcctgggc
     2581 gagcgcgatg tgaaactgga ggtcggccgc gacgctgtcg ctgccgttgc ggctggtggc
     2641 ttctatcgcg tcgagagccg ctcgcatgcg cacaaggtct tccggctgtg cacgttgtgc
     2701 tgcgagaccg gcacattcgg tttccaggct gatgcgcaat tcgagcacgg acaacacgtc
     2761 gcgcagcgtc gtggccggca ccatgtcgat acccagtttc tctcggcgcg gttccagcac
     2821 gaaactgcca atgccatgac gtgtttcgat gacctcattg gcctgcaggc gagatatacc
     2881 ttcgcgcacg acggtgcggc ttacgccgag cgtcaccatg agttttgctt cggtgggcag
     2941 tttgtcgcct ggcttcagcg cggcggattc gatctgttcg atcacgtagt cgaacacgct
     3001 ctccgccagg ttacgggcgc gtcggggtgt cacgacggat gtgagggatt cgaccatcag
     3061 aaacgctcct tgggtcagcc gggtggcgat gtcgtagttt ggagatgcgg tggatagata
     3121 gattataccg ttgtctgacg actatcaatt ttaaagattc gatggaggcg gttgatcaga
     3181 gtgggtttag acgcggtgga gaaaggtgag gtgtggggag ggcatcaagc gaggcatctg
     3241 cttcgagtct gttttttaat gaggcacccg attgcgcgct atgtcggatg ggtatcgacg
     3301 tggagtgggc gcaggatccg ggcttgttct gtccggcagg gctctcgcat gcagcagtca
     3361 gttttccaag tcctcgacgc tcagaccgga cgcgcgttga aactcgcgca tattgtgagt
     3421 cacgagcgtg agcgatctcg ctagggcttg ccccgcaatc aagacgtcgt agggcccgat
     3481 cggtgttcct gccgaagcaa gctgcgcgcg aacttcaccg gcgcagcgag cgtcttctgg
     3541 atcgaggtca agaatttcga attgcagcgc tttgaaaaat ttaggtttcc tctctgttaa
     3601 taaaaattga gctgattcat gatccaaggg gacaagacgt ggcaaagatc aacttcccgg
     3661 cggcgcgagt ggctgcacat tgttgctccg ttggctgcgc cacactcggt cagacggggg
     3721 agatcgcacg ccggctcgca aaggaatgac cctgtgccgt tgcctcgcgc ggaggccgct
     3781 agttgccaac acatccggtc atcacgcttg accattttcc gcaacgaaca ccctgtcgtc
     3841 gttagcgacc gacgccgatg tccttcggcc gtcaagaact gcgcttcgac cggtccgtct
     3901 agttcagcac gcgtcatatc ccccggcccc ggcgagcggt cgcgcatcct cctcgtacgc
     3961 tagcgaaccc aacggcattt atttttgcgg aagcatgcag gcgactcggt tattgttccg
     4021 acggaatctt cgggggcgcg gttgccgtca cgggattgag cgctcgcttt gctcgtgtgt
     4081 tcgatatccc acttcaaggg ctgaactcga tgcaaataac aaaatctggt gttgagaggg
     4141 gggttgctgg cgctcagcac acggagcagg ctgtccgccc agcgttccgc tacgatatta
     4201 acggcctgcg cgcatgggcg gtgctgccgg tcgtgctctt tcacttcgga attccgggct
     4261 tttccggagg gttcgtcggc gtcgacgtgt tcttcgtcat ctccggattc ctaatgaccg
     4321 gaattgtcgt ctcggcgctc gagcgcgacc ggttctcgct gctcgacttc tatctgtcgc
     4381 gtgcggtgcg catcctgccg gcgcttctcg cgctgtgtgc cgtgctgctc gtggtcggct
     4441 ggttctggct cgtgcgcgtt gactatcgcg cgctatcact aaatgtggtg tccgcgctca
     4501 cgttcgtctc taacgtcctg ttctggaaac gctctggcta ctttgacacg gcgtcgcatg
     4561 agaactggct tctgcaaacg tggtcgttgt ccgtagagtg gcagttctac ctattgttgc
     4621 cgcttgcggc ggccttcgcg tggcgctggc ggcgcaaggc cggcgtgtgc gtgctgttgg
     4681 ccgctgtggg tgccgcgt
//
LOCUS       DATGBK010000006         7285 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_23193, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000006 DATGBK010000000
VERSION     DATGBK010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 7285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7285
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23193"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..979
                     /locus_tag="VKJ77_00090"
     CDS             <1..979
                     /locus_tag="VKJ77_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC43706.1"
                     /translation="ALRLPYHLPDMTARLSASIGFAVSRGSVERVDVLFERADYALYN
                     AKQNSRGKPVIFSTDHEIERRRSGLIEQALAQADLARELSLDFQPIIELPGNHIAGFE
                     ALARWTNNALGMVPPGEFIRRAERSNRILLISEILLERALESAKCWPDHVRVSFNLST
                     RDIASPEATRRIVEIISASRVPAHRIELEITETALVSDFDVASDSLRLLKQLGVHISL
                     DDFGTGFSSLSYVHRLPLDKIKIDRSFVADIATNTTSQKVVKSVVDLCRNLNLDCVVE
                     GVETEDQLRILSDLGCRKMQGYLFGRPMSADDASSLLAEESEAPRFCPS"
     gene            1533..3929
                     /locus_tag="VKJ77_00095"
     CDS             1533..3929
                     /locus_tag="VKJ77_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tar ligand binding domain-containing protein"
                     /protein_id="HMC43707.1"
                     /translation="MFKRLTIQNGLTLTIAGYTLALIAAMLVAVLGLKQSNDALKQTY
                     ATDTVAITRLKTSSELMLQVQMALGNYETLFSMGRASDDLLPKARAVLKASDDNWSAY
                     LAKPRNAEESRAANAVQAARAALIKQALEPEFQQLSDNDYYKFHTTRGEADPLNARYA
                     QAMNALEALQVDHQQARFDQAQAQFHRLMVAAAMIALAALGIGLFARAALAAVIGRPL
                     TRMQSMMSEIASSQDFTRRVPVGRMDEIGRSIVAFNEMIEKIQQSSVLLKQKTADIQA
                     MLQNIQQGMLTVVDGAVVHAEYSAYLEAIFETKDIAGRPVMELVFDHTNLNSDVRSQV
                     DATIQACIGEDAINFQFNQHLLVNEVAKTMADGRVKTLDLSWSAITDENDTVMRLMLC
                     VRDVTELRQLAAETGEQKRRLEMIGEILAVNEEKFHDFVDSATGFVNENERIIRQHTQ
                     ADGAALAELFRNVHTIKGNARTYSLQHLTSIVHETERRYDALRRNDVSEEWNQEVLIG
                     DLERVKEAIERYRTINDVSLGRKDPGRNGSMEHALIVDREQIQESLRLLEAADPDDVR
                     SLLTMRDSVHRTLRILGTETIEAALSGVLESLPSLARELGKEPPIVSITDDGYRVNRQ
                     VSSTLKNVFMHLMRNSVDHGIETAAARVAQGKEAAGTIAIEAGVNREALQITLSDDGR
                     GLALGRIRDIAIERGLIDADAQLSDELVADLIFHPGFSTAERVTEVSGRGVGMDAVRD
                     FLKRENGSIDLRFTDDRRGAEYRLFQIVVTLPERCAVHSMGMPEEKEEKPLQVDALSA
                     "
     gene            3981..4682
                     /locus_tag="VKJ77_00100"
     CDS             3981..4682
                     /locus_tag="VKJ77_00100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC43708.1"
                     /translation="MALGLLVGLGAAWLERRRGAQALARQRAAAEADHDAALAQADAQ
                     HQEWIEQEKRELESLVASLRDDLVQLSTSEDEARAARASVLEFKDEWGRQAASIAAEA
                     ARLKALAVTFERWHEQMISLMGENQEMHSKNQELSSIVAHVLIVSLNASIEAARAGAA
                     GRGFSVVASEVRTLASRSQELSKSYRDSLHRNDLITTATFQDIQAGGKMIVASLGGVA
                     ALANQLQSRLEQAAT"
     gene            4679..5209
                     /locus_tag="VKJ77_00105"
     CDS             4679..5209
                     /locus_tag="VKJ77_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43709.1"
                     /translation="MISEQAKDSIERIFRQAARLRLTVGESDSCDIVQGAPHDGAADA
                     DLIVLTISSICFRLLLVLHFDHDDATRAYYLGAGQATLEERLLEICNLCCGAMNQQLV
                     EYFPDLGMSTPYVLNGHCMTYLSQLKPDFLTSYRVTVNGAVQLGATVCVCADAPLDFV
                     ASVAEVAESAGELELF"
     gene            5238..5360
                     /locus_tag="VKJ77_00110"
     CDS             5238..5360
                     /locus_tag="VKJ77_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43710.1"
                     /translation="MDMNNLSGSPEDFKEGTGDVDALVEAGELDFFLTTCLSTI"
     gene            5373..5738
                     /locus_tag="VKJ77_00115"
     CDS             5373..5738
                     /locus_tag="VKJ77_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC43711.1"
                     /translation="MAKILLVDDSSTVRDEVAGFLRKNGLDVDTAVDGKDGLAKLRMS
                     PGTRLVISDVNMPNMDGLTMVEKIRGELANQSVNVIMLTTESSPAMKERGKAAGVKGW
                     IVKPFKGEVVLETFRKLAG"
     gene            complement(5837..6937)
                     /locus_tag="VKJ77_00120"
     CDS             complement(5837..6937)
                     /locus_tag="VKJ77_00120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013955812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HMC43712.1"
                     /translation="MPSMMKAAVFVEPGRIEVVEKPIPDVGPNDALLRITTTTICGTD
                     VHILKGEYPVAKGLTIGHEPVGIIEKLGSAVVGYQEGQRVIAGAICPNFNSYAAMDGY
                     PSQDGSYLIPNGLCGCHGYKATAGWRFGNLIDGTQAEYVLVPDAQANLAPIPNGLTDE
                     QVLMCPDIMSTGFKGAENANIKIGDTVAVFAQGPIGLCATAGARMLGASTIIVVDGNE
                     ARLAVSKKMGADVTLNFKNCDVVDEIMKLTGGRGVDSSIEALGTQGTFESALRILKPG
                     GTLSSLGVYSSDLKIPLSAFAAGLGDHKINTALCPGGKERMRRLLNVVASGRVDLGEL
                     VTHHYKLDDIAAAYDLFANQRDGVLKVAIKPH"
BASE COUNT         1542 a         2073 c         2305 g         1365 t
ORIGIN      
        1 cgcgctgcgg ctaccttacc atctaccgga tatgactgcc cggctgtctg cctcgatcgg
       61 attcgccgtt tcgcgaggta gcgtcgaacg ggtcgacgtg ctgtttgaac gagccgacta
      121 cgcgttatat aacgccaagc agaattcgag gggcaagccc gtaatattct caacggatca
      181 tgaaatcgag cggcgaagat cgggtcttat cgagcaagca ctggcgcaag ctgatcttgc
      241 gcgcgaattg tcgttggatt ttcagcccat tatcgagtta cctggaaatc atattgcggg
      301 cttcgaggcg ctggcgcgtt ggactaacaa tgcgctcggc atggtgcctc caggggagtt
      361 tataaggcgc gcggagcgat cgaatcgcat tctgctgatc agcgagattt tgctcgaaag
      421 ggcgcttgaa agtgcgaagt gttggccgga tcacgtgcga gtttcgttta atctatcaac
      481 tcgcgatatc gcgtctcccg aagcgaccag gaggatcgtc gaaatcatct ctgcgagccg
      541 cgtgcctgca caccgaatcg aactggaaat tacagaaacc gcgctggtga gtgatttcga
      601 cgtggcgagc gactcacttc gactcctgaa gcaactcggc gtccatattt cgcttgacga
      661 cttcggcaca ggattttcga gtctgagcta tgtgcataga ctgccactgg acaaaatcaa
      721 gattgataga agtttcgtcg ccgatattgc gacgaacacc acgagtcaaa aagtggtgaa
      781 atcggtcgtt gatctatgtc gaaacctgaa tctcgattgc gttgttgagg gtgtcgagac
      841 agaagatcaa ctccgtatcc tgagcgacct gggttgccgg aagatgcaag gctacttgtt
      901 tggcaggcca atgtcagccg atgacgcatc gtcgctcctt gcagaggaat cggaggcacc
      961 acgtttttgc ccatcttgag tattaacgca gtaatcgaag cgccgcttga cggattcgcg
     1021 accagcgcgt cgtcttccca gctatcctag atttgattcg tcatgtcgaa gcaaaaaaaa
     1081 tattcaggat acgaaagtaa ccggcctatt gtttgtcgat tgcacgcacc atcaggctac
     1141 ccgggaactg gatcaattgc acgatcagga cgatcacaac attggtgaaa accatggtgt
     1201 cggtcgcaaa tcagaagtaa ccctaatgga tcgctaagtc accaataccg catcgccaac
     1261 cgtgcgggcc agcgtggaaa agacacgaaa ctgatggtcg agatcgtcag taatccccgg
     1321 caaagcccgt gggcgcgcgc acggctaacc ggctgatttc aaagggaact gaaaatttct
     1381 tcggttccct aaagtctcgc gaaacaaagc cgatatcgtg acaatggacg atgaaagttc
     1441 cggcagagaa cggtccgtgt gcgtgtcacc ataaacacta cggaggatag cgtgcgctgt
     1501 gtcgcatcag gcgaaattgc gcgcgtgaag atatgttcaa acgcttaacg atacagaatg
     1561 ggctcacgct aacgattgcg ggctacacgc tcgccttgat cgccgcgatg ctcgtcgccg
     1621 ttctggggct caagcagagc aacgatgcgc tcaagcagac gtatgcgacc gataccgtag
     1681 cgatcacccg tctgaagacg agttccgagt tgatgctgca agtgcagatg gcgctcggca
     1741 actatgagac gctgttttcg atggggcgcg cgagcgacga cctgctgccg aaggcgcgcg
     1801 ccgtgctcaa ggcgagcgac gacaactggt cggcgtatct ggcaaagcca cgcaacgccg
     1861 aagagtcacg cgctgccaat gcggtgcagg cggcccgcgc ggcgctcatc aagcaggcgc
     1921 ttgagccgga gttccagcag ctctcggaca acgactatta caagttccac acgacccggg
     1981 gtgaggccga ccccctcaac gcccgctatg cgcaagcgat gaacgcgctc gaagcgttgc
     2041 aggtggatca tcagcaggcg cgcttcgacc aggcgcaggc gcagtttcat cggctcatgg
     2101 tcgcagcggc catgatcgcg ctggcagcac tcggcattgg cctgttcgcc cgcgccgcgc
     2161 tggcggcggt gatcgggcgg ccgctcaccc gcatgcagtc gatgatgagc gagatcgcgt
     2221 cgagtcagga cttcacgcgc cgcgttccgg tagggcggat ggacgagatc gggcgctcga
     2281 tcgtcgcgtt caacgagatg atcgagaaga tccagcagag ctccgtgctg ctcaagcaga
     2341 agaccgccga catccaggca atgctgcaga acattcagca ggggatgctg accgtcgtcg
     2401 acggcgcggt cgtgcacgcc gagtactcgg cctacctcga ggcgatcttc gagacgaagg
     2461 acatcgccgg gcgtccggtc atggagctcg tgttcgacca cacgaatctg aactccgacg
     2521 tgcgctcgca ggtcgacgcc acgattcaag cctgcatcgg cgaggacgcg atcaactttc
     2581 agttcaacca gcacctgctt gtgaacgagg tcgcgaagac gatggccgac ggccgcgtga
     2641 agacgctcga tctgagctgg tcggcgatca ccgacgagaa cgacacagtc atgcgcctca
     2701 tgctctgcgt gcgcgatgtg accgagttgc ggcagcttgc cgccgagacc ggcgagcaga
     2761 agcgtcggct cgagatgatc ggcgagattc tcgcggtcaa cgaggagaag ttccatgatt
     2821 tcgtcgacag cgcgacgggc ttcgtcaacg agaacgagcg gattatccgc cagcacacgc
     2881 aggccgacgg cgcggcgctc gccgagctgt tccgcaacgt gcacacgatc aagggcaacg
     2941 cgcgaaccta tagcctgcag cacctgacga gtatcgtgca cgagactgag cggcgctacg
     3001 acgcgctgcg ccgcaacgat gtcagcgaag agtggaatca ggaggtgctg attggggacc
     3061 tcgagcgcgt gaaggaagcg atcgagcgtt acaggacgat caacgacgtg agcctgggcc
     3121 gcaaggaccc gggacgcaac ggcagcatgg agcacgccct gattgtcgac cgggagcaaa
     3181 tccaggaaag cctgcgtctc ctggaagcgg cggacccgga cgacgttcgc agcctgctga
     3241 cgatgcgcga ttcggtgcac cgcaccttgc gcatcctcgg caccgaaacg atcgaggcgg
     3301 cgctgtcggg cgtgctcgaa tcgctgccgt cgctcgcacg ggagctcggc aaggaaccgc
     3361 ccatcgtaag catcactgac gacggctacc gcgtgaacag gcaagtgagc agcacgctga
     3421 agaacgtctt catgcacctg atgcgcaact cggtcgatca cggcatcgag accgcggctg
     3481 cacgcgtcgc gcagggcaag gaggcggccg gcacgatcgc catcgaagcc ggcgtcaaca
     3541 gggaggcgct gcagatcacc ttgagcgatg acggccgcgg cctcgcgctc gggcggattc
     3601 gggacatcgc gatcgagcgc ggcttgatcg acgccgatgc acagctaagc gacgagttgg
     3661 tcgccgacct catctttcac ccgggctttt cgactgcgga gagggtcacg gaagtgtccg
     3721 ggcgcggtgt tggcatggac gcggtgcggg atttcctgaa gcgcgagaac ggtagcatcg
     3781 acctgcgctt cacggacgac cggcgcggtg ccgagtaccg cctgttccag atcgtggtca
     3841 ccctgccgga gcggtgtgcg gtgcacagca tgggtatgcc ggaggagaaa gaagagaagc
     3901 cgttgcaggt cgacgcgctg tccgcttgag cgacttggag aaaggtagtg atcgaacgat
     3961 atggaatctt gattgtcgga ttggcgctcg gcctgctagt cgggctcggc gctgcgtggc
     4021 tcgagcggcg ccgcggcgca caggcgctcg cgcggcagcg cgctgcagcc gaggcggatc
     4081 atgacgccgc gctcgcgcaa gccgacgctc agcatcagga gtggatcgag caggaaaagc
     4141 gcgagctcga gtcactcgtc gcgagcctgc gcgacgacct cgtccagttg tcgacgagcg
     4201 aggacgaagc acgcgcggcg cgcgcctccg tgcttgagtt caaggacgaa tgggggcggc
     4261 aggcggcgtc cattgcggcc gaagctgctc ggctcaaggc actcgcagtg acgttcgagc
     4321 gctggcacga gcagatgatc tcgctgatgg gggagaacca ggagatgcac agcaagaatc
     4381 aggagctgtc gtcgatcgtc gcgcatgtgc tgatcgtgtc gctgaacgcg tcgatcgagg
     4441 cggcgcgcgc aggcgccgcc ggccgcggct tctcggtcgt cgcgagcgag gtgcgcacgc
     4501 tcgcgtcgcg ctcgcaggag ctttcgaaga gctatcggga cagtctgcat cgcaacgact
     4561 tgatcacgac cgcgacgttt caggacattc aggcgggcgg caagatgatc gtcgcatcgc
     4621 tcggcggcgt cgcggcgctc gcgaaccagc ttcaatccag gcttgagcag gcggcgacgt
     4681 gattagcgag caagcgaagg acagcatcga gaggattttc cgccaggccg cgcgcctgcg
     4741 cctgacggtc ggcgaaagcg attcgtgcga catcgtgcag ggggcgccgc atgacggcgc
     4801 ggcagacgcc gatctcatcg tactgacgat ttcgtcgatc tgtttcaggc tactcctggt
     4861 cctgcatttc gaccacgacg atgccacgcg cgcctactac ctcggcgctg ggcaggcgac
     4921 gctcgaggaa aggctgcttg aaatctgcaa cctgtgctgt ggcgcgatga accagcagct
     4981 cgtcgagtac tttccggact tggggatgtc gacgccttac gtgctgaacg gccactgtat
     5041 gacgtatctg agtcagctga agcctgattt cctcacctcg tatcgcgtga cggtcaacgg
     5101 cgctgtgcaa ctcggcgcga cggtgtgcgt ctgcgctgac gcgccgctcg atttcgtggc
     5161 gagcgtcgct gaggtcgccg agagcgccgg cgagctcgaa ctcttttgac aacccggcaa
     5221 tcggcaagga agccagcatg gacatgaaca acctgagcgg gtcgccggag gacttcaagg
     5281 aaggcaccgg cgacgtcgac gcgctcgtcg aggctggcga gctagatttt tttttgacaa
     5341 cttgtctgtc aacgatttaa gaggaaaaca tcttggcgaa aattctcctg gtagacgatt
     5401 cgagcaccgt gcgcgacgaa gtggcgggct tcctgagaaa gaacggcctc gacgtggaca
     5461 cggcggtcga cggcaaggac ggcctcgcga agctgcggat gagcccaggg acgaggctcg
     5521 tgatcagcga cgtgaacatg ccgaacatgg acgggctgac gatggtcgag aagatccgcg
     5581 gcgagctcgc gaaccagagc gtcaacgtga tcatgctgac gacggaaagc agcccggcga
     5641 tgaaggaacg tggcaaggcg gcgggcgtga agggctggat tgtcaagccg ttcaagggcg
     5701 aagtggtgct cgagacgttc cgtaagctcg cgggctgagc gggcggcaag caacgaaaca
     5761 tcgggagcgt gcccaactgg ggtagtgacc gcatggccgg gcggtctgac tacgaacatg
     5821 acctcgacct tggtattcag tgtggcttga ttgccacctt gagtactccg tcacgctggt
     5881 tggcaaagag gtcgtaagca gcggcgatgt cgtcgagttt gtagtggtgg gttactaatt
     5941 ctcccaagtc gacacggcca gacgcgacga cgtttaacaa gcggcgcatg cgctccttcc
     6001 cgcccgggca tagcgccgtg ttgatcttat gatcgcccag gccggccgca aatgccgaca
     6061 acgggatttt caaatcggag gagtacacgc caagactgga gagcgtgccg cccggcttca
     6121 aaatgcggag cgccgattcg aatgttcctt gcgtgcctag cgcttcgatc gacgagtcga
     6181 cgccgcgacc accggttagc ttcatgattt catcgaccac gtcgcagttc ttgaaattca
     6241 gcgttacatc ggcacccatt tttttggata cggccagtcg cgcctcgttg ccatccacca
     6301 cgatgatggt gctggcgccc agcatccgcg cccctgccgt ggcgcacaag ccaattgggc
     6361 cctgcgcgaa cacggctacg gtgtcgccaa tcttgatatt cgcgttttcc gcccccttga
     6421 agccggtcga cataatgtcc gggcacatca acacctgctc gtcagtcagg ccgttcggaa
     6481 tcggagcgag gttggcctgg gcatcaggca ccagcacata ttcggcctgg gtaccatcaa
     6541 tgaggttgcc aaaacgccag cctgcagtcg ccttatagcc gtggcatccg cacaagccgt
     6601 tggggatgag gtagctgccg tcttgagacg gatagccgtc catcgcggcg tacgagttga
     6661 agttggggca gatcgcgccg gcgatcacgc gctggccctc ttggtagccg accactgcgc
     6721 ttccgagctt ttcgataata ccgaccggtt cgtgaccaat cgtgaggccc ttggcgacgg
     6781 gatattcgcc cttgaggatg tggacatcgg tgccacagat ggtggtggta gtaatgcgca
     6841 acaacgcgtc gttggggccg acgtccggaa tcggcttttc gacaacttcg atacggccgg
     6901 gttcgacgaa cacagctgct ttcatcatgg agggcatggc attttccatt tataaaagat
     6961 ttacacgcaa acaggccgcg tggcgatttc gtaagtacgc catcgaggta acaattcaac
     7021 cgtgctgtcg ccgggcgata caccaagcaa cttatgcgcc agttactgaa tgttttgggt
     7081 gccgaactgt aacggtatgg agctcaaggt ttcgtcaggt atcgaccgca aatcgtccac
     7141 cgatggacgc tttcgcctgt cgcaaaatcg gtcaccctat caagggcgag ccgcatcacc
     7201 tgttccaaat tagaacgctt tgtgcaaccg gcgttcacga gtgtgtggtg gcgatgcagg
     7261 gtctcgcagc gccggatcgc gagct
//
LOCUS       DATGBK010000007         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92636, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000007 DATGBK010000000
VERSION     DATGBK010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92636"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..850
                     /locus_tag="VKJ77_00125"
     CDS             <1..850
                     /locus_tag="VKJ77_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HMC43713.1"
                     /translation="AAVHGKNYLRFLDDAHREWKKMPAEWGDEVMSTVYIRENNPLRG
                     VLGQAARYLADGSCPVGPDTYESAYWSAQSALAGANAIIDGAREAYALCRPPGHHARA
                     EAAGGFCYLNNAAIAAQALRAQYGRVAVLDTDMHHGQGIQEIFYDRSDVLYVSIHGDP
                     TNFYPVVAGFDDERGEAGGEGYNVNLPMPHGSSEDVFFDSLDTAARVLERFQPDVLVL
                     ALGFDIYKEDPQSMVAVTTEGFGKLGGAIGALKLPTLIVQEGGYHIDTLEVNAQAFFG
                     GFDAER"
     gene            complement(961..1260)
                     /locus_tag="VKJ77_00130"
     CDS             complement(961..1260)
                     /locus_tag="VKJ77_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013958816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43714.1"
                     /translation="MPTLSAKHHASELQRQLRALLGHDQIVTQAYGAHLLIKRLDDQD
                     PIVVARLTELGRNLYGAAFRSHSGRWEPLPGSGPLDEMAQLVVTLLEPYLQPNNY"
     gene            complement(1274..2253)
                     /locus_tag="VKJ77_00135"
                     /pseudo
     CDS             complement(1274..2253)
                     /locus_tag="VKJ77_00135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013952659.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS630 family transposase"
BASE COUNT          439 a          654 c          701 g          459 t
ORIGIN      
        1 cgcggcggtg cacggcaaga actacttgcg cttccttgac gacgcacatc gggagtggaa
       61 gaagatgccc gctgaatggg gcgacgaagt gatgtcgact gtgtatatcc gcgagaacaa
      121 tccgctgcgc ggcgtgcttg ggcaggcagc gcgatatctc gccgacggca gttgcccggt
      181 tggccccgat acctacgaat cggcctactg gtcggcgcaa agcgcgctag cgggcgcgaa
      241 cgcgatcatc gacggcgcgc gtgaagcgta cgcattgtgc cggccgccgg ggcatcatgc
      301 gcgcgctgaa gcggcgggcg gtttctgtta cctgaacaat gcggcaatcg cggcgcaggc
      361 gctccgtgcg cagtacggcc gcgtagccgt cctcgatacc gacatgcacc acggccaggg
      421 catacaggaa atcttctacg accgcagcga cgtgctgtat gtctccattc acggcgaccc
      481 gacgaacttc tacccggtcg tggccggctt tgacgacgag cgcggagagg cgggcggcga
      541 gggttacaac gtgaatctgc cgatgccgca tggttcatcg gaggacgtgt ttttcgattc
      601 cctcgatacg gccgcgcgcg tactcgagcg cttccagccg gatgtattgg tgctggcgct
      661 gggctttgat atctacaagg aagatccgca gtcgatggtc gcggtgacga ctgaaggatt
      721 cggcaagctg ggcggcgcga tcggcgcgct gaagttgccg acgttgatcg tgcaggaagg
      781 cggatatcac atcgatacgc tagaggtgaa tgcgcaggcg ttcttcggcg ggtttgacgc
      841 ggagcgctag gcgttgccat ccggtaagcg attcggttgt ttaaatctgt cggcggtact
      901 gggttaccag cgccgctttt ttttgccaaa tgaggctagt acaacatccc gtaaataagt
      961 ttaataatta tttggctgca agtagggttc caggagcgtg acgaccaact gagccatctc
     1021 atcgagcggg cctgagcccg gtagaggttc ccatcgccca ctatggctgc ggaaggctgc
     1081 accgtaaaga ttgcggccga gttcggtcag acgagccaca acaatcggat cctgatcgtc
     1141 cagacgtttg atcagtaagt gagctccgta ggcttgcgta acgatctgat catggcctag
     1201 cagggcgcgc agttggcgct gcagttcgct tgcatgatgt ttcgcggata aggtaggcat
     1261 ggcaagttcc agttcaggat gcgccagttt gcaacggata gccccggaag gtccatttga
     1321 aggggcgcgc tgtctgattg cgctcgcgga taaactgctc ggtgcgctcg cgcagatgcg
     1381 cggtgctggt gtggctggca tggcgcaaca cgcggcgagt gtagagggca aaccatagtt
     1441 cgatctgatt gacccagctc gcatgcaaag gggtgaagtg gaagtgaaac cgcttaccat
     1501 gcctcgcgtt gaatgcttgc cacacggcct gggcgcgatg cgtattcaga ttatcccaga
     1561 tgacatgcac ctgtttgcca gggtacgcgt gcgccacgct ctccacgaag gccaccagat
     1621 cgtcctgcgt gcgccgctcg cgacagctgc ccagcacctg tccagtatga acatcgagcg
     1681 cggcaatcaa cgcctgggtg ccatgacgga tatattcaaa ctcacgacga cgcagccgtc
     1741 ccggtccggg cgcgcgtccc ggatgcttgc gctcgatggc ctgaatgccg gttttctcgt
     1801 cgatactcag cactaccgcg ttcctgggtg cacggcgata cagtttgcaa attacattga
     1861 ccttctcgcg aaaggccgga tccggactgt gaagccattg ttggacccgg tgcgggcgaa
     1921 tgtcgccggc ctgcaaaatt cgctgtacat ggctgcggct gatttgcccg acaatgccac
     1981 gctccacggc acgcaccaca atctcgtcga gcgtcggtgt gacccgtccc tcagcttcct
     2041 gcgcttcaca cgccagcgcg atcaactgca gtcgcgtttc ctgcgtgatg cgcgcaggac
     2101 gaccactgcg ctcaccttct cgaattcctt gcacaccttg ccgcgcaatg cgcttgcgcc
     2161 aaagtcagac tgtttgcacg gacacgccca gttcctgcgc aatcgctgta ttcgagtggc
     2221 cctcatgagc caacaacgcg aggcgcgcac gca
//
LOCUS       DATGBK010000008         6567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_185190, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000008 DATGBK010000000
VERSION     DATGBK010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6567
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185190"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..854)
                     /locus_tag="VKJ77_00140"
     CDS             complement(<1..854)
                     /locus_tag="VKJ77_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006027080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HMC43715.1"
                     /translation="MTGSSLLKPKASPSLRWLTLWGPGLLVMLADCDAGNVVTAAQSG
                     AQWGPQLLFILLALIPLLYMVQELTVRLGIFTGQGHGELVRANFGPAWAWVSAVGLGV
                     AVLGSLVTEFTGVAGIGEMFGVSRSVTLPLAAAFLVGVVFTGSHKRVDKFAIVIGAFE
                     LSFFAVAWHAHPDIPGMFRQMTPLPLSDHHYGYLAAALIGATFNPWMIFYQQAAVADK
                     KLGVQDYSAARIETAAGAVLTQLLTAAVLVAVAATLSRNGQQHSFQSVGEISDVLTMA
                     VGPRAGRFL"
     gene            complement(965..1801)
                     /locus_tag="VKJ77_00145"
     CDS             complement(965..1801)
                     /locus_tag="VKJ77_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC43716.1"
                     /translation="MDRLDQHTPAIRLADLPATDDREALRLEYQWLNADQPDAPVAVF
                     LHEGLGSISMWKDWPQKLCEQLGFRGLVYSRPGYGGSTPRAADVKWPVDFMQRQAHDV
                     LPALLDVLGIDSADRARMWVIGHSDGGSIALLYAATFPDALTGVIAIAPHVFVEDVSV
                     KAISETTALYTQGDLRARLSRHHADVDSAFYGWNDIWLDPEFRQWNITALLSSIQCPL
                     LAVQGHDDEYGTMAQIDAIASHVPNAQLAKLPACGHSPHRQCPAMLDAAIAAFVGRVR
                     GN"
     gene            complement(1832..3433)
                     /locus_tag="VKJ77_00150"
     CDS             complement(1832..3433)
                     /locus_tag="VKJ77_00150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016405 - CoA-ligase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoate-CoA ligase family protein"
                     /protein_id="HMC43717.1"
                     /translation="MDAIIAPPATAGQLAANAPPVKFNFATHLFALNETRAQKVAYID
                     DDGTTTYGELADRARRFASVLNSLGVHPEERILLVMLDSVDLPVAFLGALYAGVVPVV
                     ANTLLTPADYAYMLDHSRARVVIASGPLLPSVAQALADTSNEGCALIVSHAQDDNLPG
                     ERVFKRLLADAESQRTPFVSNADGIAFWLYSSGSTGKPKGAVHTHANLYWTAELYAKQ
                     VLGIREDDTVFSAAKLFFAYGLGNALTFPLSVGATALLMAERPTPAAVFARLTQYKPT
                     IFCGVPTLYANMLASPAMPARADLRLRMCTSAGEALPREIGEHFSAHAGCEILDGIGS
                     TEMLHIFLSNRAGHVAYGTTGTAVPGYEVELRDENGRPAPDGEIGDLYIRGPSAALMY
                     WCNREKSQATFLGDWLRSGDKYRRLPDGNYVYEGRGDDMLKVSGQYVSPVEIEMVLMQ
                     HHDVLEAAVVGITRDGLVKTRAFVVVKPGVAATDELALELKAFVKARMAPHKYPREIV
                     FAEDLPKTATGKIQRFKLREPALDA"
     gene            complement(3574..5169)
                     /locus_tag="VKJ77_00155"
     CDS             complement(3574..5169)
                     /locus_tag="VKJ77_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dehydroadipyl-CoA semialdehyde
                     dehydrogenase"
                     /protein_id="HMC43718.1"
                     /translation="MAELLRNYVAGEWVAGNGNGTTLTDPVTGEALVRVSSDGLDLRA
                     AFDYARTSGGAALRGLTYAARAALLSEVAKLLQARRDDYYAISLANSGTTKNDSAVDI
                     DGGIFTLSYYAKLGATLGDVHALRDGSPVSLSKDQSFKSQHMLTPTRGVALFINAFNF
                     PSWGLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGILPAGALSVICGSSAG
                     LLDQIETFDVVSFTGSAATAATLRAHPAFVARGARLNVEADSLNSAILAADAVPGTAA
                     FDLFIKEVVREMTVKSGQKCTAIRRAFVPKQHLGAAADALSAKLAGVSVGNPRNESVR
                     MGSLVSREQYDAVRAGIASLREEARLAFDGSKVQLVDADPAIAACIAPHLFVIDDASH
                     AVRVHDIEVFGPVATLCGYEVTTGASLLEESQAVELARRAQGSLVASVYSNDDTRLAR
                     IALELADTHGRVHAISPSVAQSQTGHGNVMPMSLHGGPGRAGGGEELGGVRALNFYHR
                     RAAIQGPAASIEALTESTGKVEI"
     gene            complement(5222..5695)
                     /locus_tag="VKJ77_00160"
     CDS             complement(5222..5695)
                     /locus_tag="VKJ77_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4863 family protein"
                     /protein_id="HMC43719.1"
                     /translation="MSPSEFQGLIARVTARIASRALDAELETWLNTEYAAGSKGYTEL
                     ASACRTGVHDGWLAEREAAGIRYGRIFKALPDTHGFSVDVVQMNNIAGPHHVHPNGEI
                     DLIVPLTEGATFDGHAAGWCVYGPGSAHRPTVAGGDALVLYLLPEGAIEFTKHAA"
     gene            5857..>6567
                     /locus_tag="VKJ77_00165"
     CDS             5857..>6567
                     /locus_tag="VKJ77_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HMC43720.1"
                     /translation="MKQTAVLQPIEGGDPGADVEKGREGRDPFLVGMGERVRLMRARR
                     GLTRKALAKEADVSERYLANLESGVGNASVLFLRQLMKALNCTLAEIVGDETTLTPDW
                     LRIRELLSGRDHDTLKRARIALEEMLATAPQDPHRMERIALIGLRGAGKSTLGRMLAD
                     ELKVPFVEINRVIAQLAGCPPSEIHALYGATAYRRYEHRALEAVIQEHPRAVIASPGG
                     LVSEPATLNALLTHCFTVW"
BASE COUNT         1298 a         1965 c         2060 g         1244 t
ORIGIN      
        1 agaaaacgtc cggcgcgcgg tcctacggcc attgtgagga catcgctgat ttcacctacg
       61 ctttgaaaag agtgctgctg accgttcctc gacagcgttg ctgcaaccgc gacaagcacc
      121 gctgctgtga gcaattgcgt aagaaccgcg ccggccgcag tttcgattcg ggccgcggaa
      181 tagtcctgga cgcccagctt tttatcggcg accgcggcct gctggtagaa gatcatccag
      241 ggattgaagg tcgcgccaat caatgcagcc gcgagataac cgtaatgatg gtcggagagc
      301 ggaagcgggg tcatctgccg gaacatgccc gggatgtccg ggtgggcatg ccaggcgacc
      361 gcgaagaatg acagttcgaa agcgccaatg acgatggcga acttgtccac gcgtttgtgc
      421 gagccggtga acacaacgcc caccaggaac gcggcggcga gtggcaacgt gacggatcgc
      481 gagacaccga acatctctcc tatgccggcg accccggtga actcggtcac cagcgagccg
      541 agcacggcga cgcctaaccc gactgccgag acccatgccc atgcgggacc gaagttcgcg
      601 cgaaccagct cgccatgacc ctgcccggtg aatataccca gccggacggt gagttcctgc
      661 accatataaa gcagggggat gagcgcgagc agaatgaaca gtagctgagg gccccattgc
      721 gcgccgctct gcgccgctgt cacgacgtta cctgcgtcgc agtcggcgag catgacgagc
      781 aggcccggtc cccacagggt gagccaacgc agactgggtg aagccttcgg tttgagcaag
      841 gaggaaccag tcatgcaatt tgaaaggaag cgaagggtct agggggtgac cgattgtatc
      901 gatatttcgg tcttcccaag tcggcacgtt gcgtccttca gcggccctgg ttcgtgccgg
      961 ggcttcagtt acccctgaca cgcccgacga acgccgcgat cgcggcatcg agcatggcag
     1021 ggcactggcg gtgcggagaa tgtccgcaag caggcagctt ggctagctgt gcattcggca
     1081 cgtgcgacgc aatggcgtcg atctgtgcca tcgttccgta ctcgtcgtca tggccttgca
     1141 cggcgagcaa agggcattgg atggaagaca gcagggccgt gatgttccac tgcctgaatt
     1201 cgggatccag ccagatatcg ttccacccgt agaaagcgga atcaacatcg gcgtgatgac
     1261 gcgatagcct ggcccgcaaa tcgccttgcg tgtatagagc ggtggtctct gagatcgcct
     1321 tgacggacac atcttcaacg aatacatgcg gcgcaatcgc aatcacgcca gtcagcgcgt
     1381 cggggaaagt cgccgcatac agcaacgcga tagaaccgcc gtcgctatgg ccgatgaccc
     1441 acatccgcgc acggtcggca ctgtctatgc caagaacgtc gagcaatgcc ggcagaacgt
     1501 catgagcctg ccgctgcatg aaatcgactg gccatttcac gtctgctgca cgcggggtcg
     1561 atccgccata acccggtcgc gaatagacga ggccacggaa ccccagttgt tcgcatagct
     1621 tctgcggcca gtccttccac atggaaatgg agccgagccc ttcgtgcaag aagacggcga
     1681 caggggcatc gggctggtcg gcattcaacc attgatactc gagacgaagc gcttcccggt
     1741 cgtccgttgc gggcagatcg gctaggcgga ttgcaggggt gtgctggtct aatcggtcca
     1801 tgtctcgcgg ccaggcaatg gagggggacg ttcaggcatc gagggccggt tcgcgtaatt
     1861 taaacctctg gattttacca gtcgcggttt tcggcagatc ttcagcgaac acgatctcgc
     1921 gcggatattt gtgaggcgcc atcctggcct tgacgaacgc cttgagttcc aaggcgagtt
     1981 cgtctgttgc cgctacaccg ggtttgacca cgacgaacgc acgcgttttg acaaggccgt
     2041 cgcgggtaat gccgacaacc gccgcttcga gaacgtcatg gtgctgcatc aggaccattt
     2101 cgatttcgac aggcgacaca tactggccgc ttactttcag catgtcatcg ccgcggcctt
     2161 cgtagacgta gtttccatct ggcaatcgac gatatttgtc gccgctcctg agccagtcgc
     2221 caagaaacgt tgcctgggac ttctcgcggt tgcaccagta catgagcgcg gcgcttgggc
     2281 cccggatgta caggtcgccg atctcgccat ccggcgccgg acggccgttt tcatcgcgca
     2341 gttcgacttc atacccgggt acagctgtgc cggtcgtccc gtacgcgaca tgacccgctc
     2401 gattcgacaa gaagatgtgc agcatttctg ttgagccgat accgtcgaga atctcgcagc
     2461 ccgcatgggc cgaaaaatgc tcgccgatct cgcgtggcaa cgcttctccc gctgacgtgc
     2521 acatccgcaa gcgaagatcg gcgcgggccg gcatggcggg cgaagcaagc atgttcgcgt
     2581 agagcgtggg cacgccgcag aaaatggtcg gcttgtattg cgtgaggcgt gcgaagacgg
     2641 cagccggcgt gggccgctcg gccatgagga gtgccgttgc accgactgaa agagggaagg
     2701 tcagcgcgtt gcccaatcca taggcgaaga acagcttggc cgcggaaaac acggtatcgt
     2761 cttcacggat ccccagcact tgcttcgcgt acagttccgc ggtccagtac aggttcgcat
     2821 gcgtatggac ggcgccttta ggcttgcccg tcgagcccga cgagtataac cagaacgcaa
     2881 ttccatctgc attactcacg aatggtgtgc gctgtgattc tgcatctgcc aacagacgct
     2941 tgaatacgcg ttcgcctggg agattgtcgt cttgggcatg ggaaacgatc agcgcgcagc
     3001 cttcgttgga cgtgtcagcg agtgcttgcg cgacgctcgg caatagcggc cccgacgcaa
     3061 tgactacgcg ggcccggctg tgatcgagca tgtaggcgta gtccgccggc gtcagcaggg
     3121 tgttcgcgac aacgggcacg acgcccgcat ataacgcacc gaggaacgca acgggcaggt
     3181 ccacgctgtc cagcatgacc agcaggatgc gctcttcggg atgaacgccc agcgagttca
     3241 gcaccgaggc aaaccggcgc gcccgatccg ctaattcgcc atacgtcgtg gttccgtcat
     3301 cgtctatgta cgcaactttt tgcgccctag tttcgttcaa cgcgaacaga tgcgttgcga
     3361 agttgaattt gactggcggg gcattggcgg ccagttgtcc ggctgtcgca ggcggcgcaa
     3421 tgatggcgtc catggtgtct ccttcctgat aatggggcga cgcctatggg ccggacggat
     3481 gccgtgcgcc atgcgttcgg ttttgttcga tgcacagatc gtgtcgggcc gacgatgcgt
     3541 tgaacgccgg ccgctaacct tcagcgcttt gcttcaaatt tcgaccttgc cagtcgattc
     3601 cgtgagcgct tcgatagaag cggcgggccc ctggattgcc gcgcgtcgat gataaaaatt
     3661 cagggcgcga actccgccga gttcctcacc gcctccggcg cgtccgggac cgccatgcag
     3721 tgacatcggc atgacgttgc cgtggcctgt ctgactctgc gcgactgagg gcgagatggc
     3781 atggacgcgg ccatgtgtat cggcgagttc cagcgcaatg cgagcaaggc gcgtgtcgtc
     3841 gttcgaatac accgaagcga ccagcgagcc ctgagcgcgc cgcgcgagtt caactgcttg
     3901 agattcttcg agtagcgaag cacccgtcgt gacttcataa ccacacagtg tcgccacggg
     3961 accgaacact tcgatatcgt ggacacgtac cgcgtggctt gcgtcgtcga tcacgaacag
     4021 atgcggcgcg atacacgcgg caatagccgg atcggcatcg acgagctgaa cctttgaacc
     4081 gtcgaacgcc aggcgcgctt cctcgcgcaa ggatgcgatg ccggcacgga ccgcatcgta
     4141 ttgttcgcgg ctgacgagtg aacccatgcg cacggactcg ttgcgcgggt tgcccacgct
     4201 cacgcctgcg agcttcgcgc tcagcgcgtc ggccgctgcg cccagatgct gtttcggcac
     4261 gaatgcgcgg cggatggccg tgcatttctg gccggacttg acggtcatct cacgcacgac
     4321 ttccttgatg aacaagtcga acgcagcagt gccgggaacc gcatcggccg cgaggatggc
     4381 gctgttgagg ctatcagctt ccacgttgag ccgggcgccg cgggcgacga atgcgggatg
     4441 ggcgcgcagc gtcgcagcgg tcgcagcgga gccggtgaac gacacgacat cgaatgtttc
     4501 gatctggtcg agcaggcccg ccgaactgcc gcatatcacc gataacgcgc cggcgggcaa
     4561 gatgccggca tcgacgacat cggccaccat gcgttgcgtc agccatgccg tcgcggtagc
     4621 aggcttgacg atcaccggta cgcctgagag cagcgcgggc gcggctttct cccacaggcc
     4681 ccaggacgga aagttgaacg cgttgataaa gagcgcgacg ccacgtgtgg gcgtcaacat
     4741 gtgctgcgat ttgaaactct ggtccttgct aagactcacg ggcgagccat cgcgcagcgc
     4801 gtgcacgtcg cccagcgtgg cgcccagttt cgcgtaataa gaaagcgtga aaatgccgcc
     4861 gtcgatatcg accgccgaat cgttcttcgt cgttcccgaa ttcgcgagcg aaatggcgta
     4921 gtagtcgtca cgtcgtgctt gcagcagctt cgcgacctcc gaaagcagcg cggcacgagc
     4981 ggcgtaggtc aggccgcgca atgccgcacc gccggacgtg cgcgcgtagt caaaggccgc
     5041 gcggagatcg agaccatcgc tggaaacgcg caccagcgct tctcccgtga ccggatcggt
     5101 gagcgtcgta ccgttgccgt tgcccgcgac ccattcgccc gcgacgtagt ttcttaatag
     5161 ttcggccatt caaaagccct tcgtggtcgt tgcttgattt gatgtaaacc gaggcatccg
     5221 ctcaggccgc gtgtttcgtg aattcgatcg caccctcggg caacagataa agcacgagcg
     5281 cgtcgccacc ggctacggtc ggccgatgtg cgctgccggg accgtacacg caccagccgg
     5341 cggcatggcc gtcgaacgtc gccccttcgg tcagcggcac gatcaggtcg atctcgccgt
     5401 tcggatgcac atggtgggga ccagcgatat tgttcatctg cacgacatcg acggaaaaac
     5461 cgtgggtatc gggcaaggcc ttgaagatgc gcccgtaacg aatcccggcc gcttcgcgct
     5521 cggcaagcca gccgtcgtgc acgccggtgc ggcacgcgct cgcgagttcg gtgtatccct
     5581 tactgcctgc cgcatactcg gtgttcagcc acgtttcaag ctctgcatcg agcgcccggg
     5641 acgcgattct tgccgtcacg cgcgcaataa ggccctggaa ctcgctgggg gacatgcgta
     5701 tctccgtcgc gctaaagcgc tgttggccgc gccgatctcc gcgaattcgc agcgacggga
     5761 cagccttctt cgtactgggt gcattaaact tagcttgcaa cacattgcat gtcaagcact
     5821 atagtacatt tacgcatcct actgagagtt atgtatatga agcaaaccgc cgttttgcag
     5881 ccaattgagg gcggagatcc cggtgcggac gtcgaaaaag ggcgcgaggg ccgcgatcct
     5941 ttcctcgtcg ggatggggga gcgcgttcgg ttgatgcggg cgcgtcgcgg actgacgaga
     6001 aaagcgttgg cgaaagaggc tgatgtgtca gagcgatatc tggcgaacct ggaatcgggt
     6061 gtcggcaatg cttccgtgct gtttctccgg cagttgatga aagcattaaa ttgcaccttg
     6121 gcggaaatcg tgggagacga aaccacgttg acgcccgact ggctgcgcat ccgggaattg
     6181 ctgagcggcc gtgatcacga caccctcaag cgcgcgcgca tagcgctgga agagatgctc
     6241 gccacggccc cgcaggaccc tcaccggatg gaaagaattg cgctgatcgg cttgcgcggc
     6301 gcgggtaaat cgacgctcgg ccgcatgctg gccgacgaac tgaaagtgcc gttcgtcgag
     6361 atcaaccgcg tgatcgcgca actggccggc tgcccgccgt cggagattca cgcgctatat
     6421 ggagcaacgg cttatcgtcg atacgagcat cgcgcgctcg aggcggtgat ccaggagcat
     6481 ccgcgtgcgg tgattgcgtc gccgggtggc ctggtgtccg agccggctac cctgaacgcg
     6541 ctgctgacgc actgttttac ggtatgg
//
LOCUS       DATGBK010000009         1672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_138955, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000009 DATGBK010000000
VERSION     DATGBK010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138955"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..523)
                     /locus_tag="VKJ77_00170"
     CDS             complement(<1..523)
                     /locus_tag="VKJ77_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006475984.1"
                     /note="with YejAEF is involved in resistance to microcin
                     C; Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin ABC transporter permease"
                     /protein_id="HMC43721.1"
                     /translation="MAAYILRRLLLMIPTLIGVVTLTFVVTQFVPGGPVEQILIQMRH
                     GGTHGEAGGSGGYHGSQGVDPQQVEQLKKQFGFDKPPLVRYVSMLKNYASFNLGQSYY
                     QHQSVWGVIRSKLPVSITLGLWTVMLTYLIAVPLGISKAVRNGSRFDTATSVLVLTGY
                     AIPGFVLGVLLLML"
     gene            complement(531..>1672)
                     /locus_tag="VKJ77_00175"
     CDS             complement(531..>1672)
                     /locus_tag="VKJ77_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC43722.1"
                     /translation="YRRNPEYWAADLPSRRGMYRFQRITFRLFTDFYTSREDFKADHT
                     DMRVEYSSSAWKRQYVGKNFSNGSLKRGEFPDGPAQMQGMVINTRKPQFADARVRRAL
                     TLAFDYDWLNRLTFYGQYRRTGSYFQDSPFGATGVPDAKELKLLEPYRSMLPASVFGP
                     MLTPPDTLPPHSLRANLREAQALLNEAGWQYRDGALRNASGTPMTIEVMDDQPGMDKI
                     ILPYIQQLQTLGIQAHLRELDSALYEKRMDAFDFDMTTYIYDPVTIPGGELTRRFGSA
                     AASQPGSENFPGVRSKAADAMIDAALKAQTLSDLETATRSLDRILINGYYIVPEYYTP
                     DTRVGYRARMGFPRVSPLSYNAEDWLIDYWFVKAPSGATTAASTH"
BASE COUNT          343 a          511 c          498 g          320 t
ORIGIN      
        1 acagcatcag cagcagcacg cccaacacga aacctggaat ggcgtagccg gtcagcacga
       61 gcacgctcgt ggcggtgtcg aaccgggagc catttcgcac agccttcgaa atccctagcg
      121 gcaccgcaat gaggtaggtc agcatcacgg tccagagccc caacgtaatg gagaccggca
      181 gcttcgaacg aatcacgccc cacacacttt gatgctggta atacgactga ccaagattga
      241 agctcgcata attcttgagc atgcttacgt agcgcacaag cggcggcttg tcgaagccga
      301 attgcttctt gagttgctcg acctgctgcg ggtcgactcc ctggctaccg tgatacccgc
      361 cgctcccgcc cgcctcgccg tgggtcccgc cgtggcgcat ctggatcagg atctgctcga
      421 ccggtccacc cggcacaaac tgcgtcacga cgaacgtcaa ggtgaccacg ccgatcaacg
      481 tggggatcat cagcaacaga cgtctgagga tataagcggc catggcaatc tcagtgtgtt
      541 gaagcagccg tagtggcgcc ggacggcgcc ttcacgaacc aatagtcgat cagccagtcc
      601 tccgcattgt aagaaagcgg cgagacccgc gggaaaccca ttcgcgcccg gtatcccacg
      661 cgcgtatccg gcgtgtagta ctccggcaca atgtagtacc cgttgatcag gatgcgatcg
      721 agcgagcgcg tggcggtctc gagatcgctt agtgtctgcg ctttcaacgc agcgtcgatc
      781 atcgcgtcgg cagctttcga acggaccccc gggaaattct ccgagcccgg ctgtgacgct
      841 gccgcgctgc cgaagcggcg tgtcagctcg ccgcccggaa tggtgaccgg atcgtagata
      901 tacgtggtca tatcgaagtc gaatgcgtcc atgcgcttct cgtacaacgc gctgtcgagt
      961 tctcgcagat gcgcctgtat gccgagagtc tgcaactgct ggatatacgg caggatgatc
     1021 ttgtccatgc cgggttggtc gtccatgacc tcaatggtca tcggcgtgcc gcttgcgtta
     1081 cgcaatgcac cgtcacgata ctgccagccc gcttcgttca gaagcgcctg ggcttcacgc
     1141 aaattggcac gcagcgaatg gggcggcaaa gtgtccggcg gcgtcagcat cgggccgaac
     1201 acggaggcgg gaagcatcga acgatacggt tcgagcagct tcaactcttt cgcatccggc
     1261 acgcccgtcg cgccgaacgg ggagtcctga aagtaacttc ccgtgcgacg gtattgaccg
     1321 tagaaagtca gccggttcag ccagtcgtaa tcgaaggcga gcgtcagtgc gcgccgcacg
     1381 cgagcgtctg cgaactgcgg cttgcgcgtg ttgatgacca tgccctgcat ctgcgccggg
     1441 ccatcgggga actcacccct tttgagcgac ccgttgctga aattcttgcc gacgtactgg
     1501 cgtttccatg cagacgacga atactccacg cgcatatcgg tatgatcggc cttgaagtct
     1561 tcccgcgacg tgtagaagtc ggtgaagagc cggaacgtaa tgcgctgaaa gcggtacatg
     1621 ccgcgtctcg acggcaggtc agcggcccag tactccgggt ttcgcctgta gg
//
LOCUS       DATGBK010000010         3738 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92690, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000010 DATGBK010000000
VERSION     DATGBK010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3738
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92690"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VKJ77_00180"
     CDS             <1..383
                     /locus_tag="VKJ77_00180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HMC43723.1"
                     /translation="LVVLVGQWVLGTNGPSFLIAALAQRAISLVMMVLAFAVLLKFLP
                     SARMQWRDAALGALTAAVLFEGGKRLFAFYLQHAGTANTFGAAGSLAIILMWLYYSAA
                     VFLLGAEVSAMVARRRTQRISGWR"
     gene            complement(457..1941)
                     /locus_tag="VKJ77_00185"
     CDS             complement(457..1941)
                     /locus_tag="VKJ77_00185"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007000205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HMC43724.1"
                     /translation="MPPSLELRTKQSLALTPRLQQSVRLLQLSSLEFQQELRNALDTN
                     PFLEYDETQAEDNALSTDNGNSMADTPAAVDQTAPVDAPMSTESSADTSDSSDSQSHE
                     DSMNEFSSDPFGRTSTRNNGDGEGSDPADWVRIEPSLHETLHDTLRLYPINDRDRAVA
                     QLIIEALDDDGYLRQDLQELSELVDIEPALSEDELNIALKLVQSLDKPGVGARNLSEC
                     LSLQLDALDAETPGREVALEIVKHHLERLARREQAELQKKIGCSAEELRIACALVRKL
                     DPKPGANYGAAEDNYVVPDVIVRQVKKNWVVTINPAVLPRARIHRMYAELFAQSAGAS
                     RSPLAQQLQEARWLIRNAQQRFTTIQRVAECIVSHQKAFFDYGEIALKPLVLRDVADE
                     LELHESTISRATGNKYMSTPRGIFEFKHFFPRELSTESGGTCSAAAVRALLKEMIAKE
                     SSSDPLSDVSLAKMLADQGVIVARRTVAKYRHLMKVPPAELRRG"
     gene            2422..2754
                     /locus_tag="VKJ77_00190"
     CDS             2422..2754
                     /locus_tag="VKJ77_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013341259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HMC43725.1"
                     /translation="MKSTQILKAAGSIACVVFALNVSAQTATTSTGASTSIGTKVDDT
                     AVTTKVKAELLGAKNVKSTHIHVKTRAGVVSLTGTVPSAEDKSGAEDVVSKVDGVAKV
                     RNHLKIVD"
     gene            2951..3268
                     /locus_tag="VKJ77_00195"
     CDS             2951..3268
                     /locus_tag="VKJ77_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43726.1"
                     /translation="MNQTKKFALLGALALALSGPVLAQSAGGSSGGPTAGAGASEVGG
                     HAGATAAPTEGGMAASGSMGMSKKGSHGTTLHKQNKATHLRGASAAAAASALGTNDKG
                     SPQ"
     gene            complement(3473..>3738)
                     /locus_tag="VKJ77_00200"
     CDS             complement(3473..>3738)
                     /locus_tag="VKJ77_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007000208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PA2169 family four-helix-bundle protein"
                     /protein_id="HMC43727.1"
                     /translation="PQTGGTVGGALHRGWVDIKSAVTHRSDHGILEECERGEDVAKKN
                     YRDALDKELPADVRAVVERQYQGVIENHDRIRDLRDQYAAAKP"
BASE COUNT          730 a         1041 c         1152 g          815 t
ORIGIN      
        1 ccctcgtggt cctggtcggt caatgggtgc tgggcacgaa cgggccgtcc ttcctgatcg
       61 cggcgctagc gcagcgagcc atttccctgg tgatgatggt gctcgcgttc gcggtgttgc
      121 tcaaattcct gcccagcgcg cgcatgcaat ggcgggatgc cgcgctcggc gcgttgaccg
      181 ccgccgtgtt gttcgagggc ggcaaacggc tctttgcgtt ctatttgcag cacgcgggca
      241 cggcgaatac gttcggtgcg gccgggtcgc ttgcgatcat cctgatgtgg ttgtactact
      301 cggcggcggt gttcctgctg ggcgcggagg tgtcggcaat ggtcgcgcgc agacgcacgc
      361 aacgaatctc cggctggcga taaaaaaacg cccctgaaat tattcaaagg gcgttttttt
      421 ccgcctgttt tcagcctgaa aggcggattg tctacatcaa ccgcggcgca actccgccgg
      481 tggcaccttc atcaaatggc gatacttcgc caccgtccgg cgcgccacga tcacgccctg
      541 atctgcaagc attttggcga ggcttacatc ggatagcgga tcgctgctgc tttccttcgc
      601 gatcatttcc tttagcaggg cgcgcacggc agcggccgag caagtaccgc cgctttcggt
      661 actgagttcg cgcgggaaga agtgtttgaa ctcgaagatg ccccgtggcg tagacatgta
      721 cttgttgccc gtcgcacggg agatggtcga ctcatggagt tcgagttcat cggcgacatc
      781 gcgcagtact agcggtttta acgcgatttc gccgtagtcg aagaacgcct tctgatgtga
      841 cacgatgcat tccgccacgc gctggatcgt cgtgaagcgt tgctgggcgt tgcggatcag
      901 ccagcgcgct tcctgtagtt gttgcgcaag cggcgagcgg ctcgcacccg ccgactgcgc
      961 gaacagttcc gcatacatgc gatgaatgcg cgcacggggc agcacggcgg ggttaatcgt
     1021 cacgacccag ttcttcttca cctgccgcac gatcacgtcg ggcaccacat agttgtcttc
     1081 cgccgcgcca taattcgcgc ccggcttggg gtcgagcttg cgtacaagag cacaggcaat
     1141 gcgcagttct tccgcgctgc agccaatctt cttctgcaac tcggcttgct cgcggcgggc
     1201 gagccgctcg aggtgatgct tgacaatctc gagtgcgact tcgcgtcccg gcgtttccgc
     1261 gtccagcgcg tcgagttgca gcgacaaaca ttcggacaag ttgcgcgcgc ccacaccagg
     1321 cttgtcgagc gattgcacga gcttcaaagc gatgttcaac tcatcctcgg acaacgccgg
     1381 ctctatatcc acgagctccg acagttcctg caaatcctgc cgcagatatc cgtcatcatc
     1441 gagtgcttcg atgatgagct gcgccacagc acggtcgcga tcgttgatcg gatagagccg
     1501 cagtgtgtcg tgcagcgttt catgcagcga gggttcaatg cgtacccagt cggccgggtc
     1561 ggagccttcg ccatcgccgt tattacgcgt cgatgtccgg ccgaacggat cggatgaaaa
     1621 ctcgttcatc gagtcctcat gcgactgcga gtcgctgctg tccgatgtgt cggcgctact
     1681 ttcagtactc ataggggcat cgacgggcgc ggtctgatca acggccgcag gtgtgtcggc
     1741 cattgagttg ccattgtcgg tggaaagcgc gttgtcttct gcctgcgtct cgtcgtactc
     1801 gaggaacggg ttcgtatcaa gcgcgttgcg caattcctgc tgaaactcga gcgatgaaag
     1861 ttgcagcaga cgaaccgatt gctgaaggcg cggcgtgagc gcaagacttt gcttggtgcg
     1921 tagttcgagt gaaggcggca ttgcgtgttg ttcctcatgt tgggactttc gtaggtcctt
     1981 aagagcaaca gtcatgccat gcgtgctgca gggcgcgtga gcgctaggtt tcaatacgat
     2041 tttcattcgc cggcagcatg cccggaggtt cgtcaggcag gcaaatgcgc gcacttttta
     2101 cacgcgcacg ggcaaaagca ctgcgtctgt gaagcggtag cttgggtctc acgccggtgg
     2161 taaacatcgc gtggacaaaa caccgggtaa gcattgcagc gcacggtctt aacgcggctt
     2221 tcaacgtcac atttgccgat tgtcgcggac ggtccggcac gctctttgcg tctgacctat
     2281 tactactcgt ggggtctcgg cgctgcgggt atgagagagc agggctttgc agcaagatgc
     2341 tgcggccgta cgaggcggcc tacgctcaaa taagacagcg gcaacgccgc agtttttaaa
     2401 ccaactagaa ggagagttac gatgaaatcg acccaaatcc tgaaggcagc cggcagtatc
     2461 gcgtgtgtcg tgtttgcgct taatgtcagc gcacaaaccg ctacaacgtc gacaggcgcc
     2521 tccacgtcga ttggtacaaa ggtcgatgac acggcagtca cgaccaaggt caaggcggaa
     2581 ttgctgggcg cgaagaatgt caagtccacg catatccatg tgaagacgcg tgctggcgtt
     2641 gtgtcgctga ccggtacggt gccgtcggct gaagacaaga gcggcgcgga agacgtggtg
     2701 tcgaaggtgg acggtgtggc aaaggtgcgc aaccacctga agatcgtaga ttaagggctg
     2761 gcgcaaaacg ggcggcgcgc tcgctgtccg ttttgtttgc attggttggt agttagggtg
     2821 tcgtatgaag taattaataa gaagtccaaa tagttgtggt ctggatgtag tccatcactc
     2881 ataacggagc tggtcttcgc ttaagtgctt aagtctcgat gaaccagttc cccagggaaa
     2941 ggagattttc atgaatcaaa cgaaaaagtt tgcgttgctc ggcgctctgg ctcttgccct
     3001 ctcaggtccg gtactggctc agtcagccgg agggtcgtca ggtgggccga cggctggcgc
     3061 gggcgcgagc gaagtaggtg ggcacgctgg tgctaccgcg gcgccaacag aaggcggtat
     3121 ggcggcttcc gggagcatgg gcatgagcaa gaagggctcg cacggaacga ccctgcacaa
     3181 gcagaacaag gcgacgcatc ttcggggcgc atcggcggct gcggcggcat cggcgttggg
     3241 taccaacgac aaggggtcac cgcagtaaac cgcgttatct gtttgcgcgt gggtgtgaca
     3301 ggaacccgcc ggctgcgaca gcagccggcg ggtttttttc ggcttccgtc gtcagtttga
     3361 gaacataaaa atcaatacgg atgccgaatg attacgcaga tttatagacg caaataagaa
     3421 aaaagccggc gcacctttca gcgcgccggc ttgatttcag cacgaccaat gattacggct
     3481 ttgcagcagc gtactggtcg cgcagatcgc ggatacggtc gtgattttcg attacgccct
     3541 ggtattggcg ctcaaccacg gcgcgcacat ccgccggcaa ttccttgtcc aacgcgtcac
     3601 gataattttt cttcgcaacg tcttccccgc gctcgcattc ctcgagaatc ccatggtcgc
     3661 tacgatgggt cacggcggac ttgatgtcca cccagccacg atgtaacgct ccgccgaccg
     3721 tgccgccggt ttgcggct
//
LOCUS       DATGBK010000011         3268 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92716, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000011 DATGBK010000000
VERSION     DATGBK010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3268
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92716"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /locus_tag="VKJ77_00205"
     CDS             <1..632
                     /locus_tag="VKJ77_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HMC43728.1"
                     /translation="TFAPADWEPFAALSGLSVPVELSAGAGRDRGEFSEDLLLTHRGL
                     SGPGVLQISSYWNPSEPICIDLLPGVDATSELIAAKRESRKQVGTFLAERVPARLAQT
                     WLDVQRVAADARLADLPDKTLRQIGESLSRWTLTPNGTEGYRKAEVTRGGVDTRELSS
                     TTMMSSRVAGLYFIGEAVDVTGWLGGYNFQWAWASGVAAGKAAAELVRA"
     gene            1023..1469
                     /locus_tag="VKJ77_00210"
     CDS             1023..1469
                     /locus_tag="VKJ77_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HMC43729.1"
                     /translation="MSLKDQITDDMKTAMRARETDRLGTIRLLLAAIKQREVDERVTL
                     DDAAITAVIDKMIKQRKDSISQFQTAGRDDLVAKEQAELGVLAAYMPEQMSSDAINAE
                     IRAAVAATGAAGPQDMGKVMAVLKPKLAGRADMTAVSGLVKAALAK"
     gene            1541..>3268
                     /gene="dnaG"
                     /locus_tag="VKJ77_00215"
     CDS             1541..>3268
                     /gene="dnaG"
                     /locus_tag="VKJ77_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010120079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HMC43730.1"
                     /translation="MIPHSFLQDLLNRVDIVDVVGKSVQLKKGGANFMGLCPFHNEKS
                     PSFTVSPTKQFYHCFGCGAHGTAISFLMEHAGLTFPEAVKDLAQSCGLTVPQEQSMRG
                     GGGVGGEGYAPAPSKAVSVALTEVMQTACEFYRKQLRGAPNAIEYLKKRGLTGEIALR
                     FGLGYAPDGWQSLEAAFPDYKNDNLVEAGLVIVSEKSDNQGQSRRYDRFRERVMFPIR
                     NVKGNVIGFGGRVLDGGEPKYLNSPETPLFSKGSELYGLFEARLAIRELGYALVVEGY
                     MDVVALAQLGFANAVATLGTACTPIHVQKLFRQTDTVVFSFDGDSAGRRAARRALDAC
                     LPHAADNRTIRFLFLPKEHDPDSYVREFGTDGFGEQVDRAMPLSQFLLNEVLNDKELD
                     QPEGRAKALFDAKPLLQALPANALRVQILHMLADRLNTPFGEIAALCDIDSRAAAVAR
                     AALPKSERRRVKGHEQRALRNLVMYPAIYATLDHESEQTLVTMTEHGELFSEVIGHAR
                     ELGETAEFQMLSDLLRNAANAPTYEDIFQEILAYDENVRDLLMRDPADEGANERVQEQ
                     KKLLAEELHA"
BASE COUNT          677 a          972 c         1045 g          574 t
ORIGIN      
        1 tgaccttcgc gcccgctgac tgggagccgt tcgcggcgtt atccgggttg tcagtgccag
       61 tcgaactcag cgcgggcgca ggccgcgacc gtggggaatt cagcgaggac ctgctgctca
      121 cgcaccgcgg tttatcgggg ccgggcgtgc tgcagatttc gagctactgg aatccctcgg
      181 agccgatttg catcgacttg ttgcccggcg tcgatgccac cagcgaactg atcgcggcca
      241 agcgggaatc gcgcaaacaa gtcggcacgt ttctcgccga acgtgtgccg gcgaggctcg
      301 cccaaacctg gctcgacgtg cagcgtgtgg ccgccgacgc ccgtctcgcc gatctcccgg
      361 acaaaacgct gcgccagatc ggcgaatcgc tgtcccgctg gacgctcacg ccgaacggca
      421 cggaagggta ccggaaggcc gaggtcacgc gcggcggcgt ggacacccgc gagctttcat
      481 ccacgaccat gatgagttcg cgcgtcgcgg gtttatattt catcggcgaa gcggtcgatg
      541 tcaccggctg gctcggcggc tacaacttcc agtgggcgtg ggcgtcgggc gtggcagcgg
      601 gcaaagcggc ggcggaactg gtgcgggcct agaaccgcaa aggcatgacc agtatggctt
      661 tgacccgtaa gagctggtat ccgtgcaagg ccgtttccct tgggaaatcc tgatttcgac
      721 ctgctatact gcttcgttcg tagcggcaat cggcaggcaa ttggcaccaa gcgggcgcga
      781 gcgcaaaatg agtgaaaacc gggcggagat ccatgaagat agaaaacgat ccctgccgcg
      841 agcggccact cgacctgtct cgggaccctg ccttggcgtc gctccggcca gcttcaaagg
      901 tacccgaatc accccgttca tgatcccgct tgaggaaacg tcccaagcgg gtttttgctt
      961 tagcgccatg aacggttgac gtccgcattc tctcaacaca gcaccagcag agttcccaag
     1021 cgatgagcct caaagaccag atcaccgacg acatgaaaac cgcgatgcgc gcccgagaaa
     1081 ccgatcgcct cggcaccatc cggctactgc tcgcggcaat caagcagcgc gaagtcgacg
     1141 agcgcgtgac gctggacgac gcagccatca cggcagtcat cgacaaaatg atcaagcagc
     1201 gcaaggactc gatcagccag ttccagacgg ccggacgtga cgacctggtg gcgaaggaac
     1261 aagccgagct gggcgttctg gccgcctaca tgcccgagca gatgtcgagt gacgcgatca
     1321 acgccgagat tcgggcggct gtggccgcaa ccggcgctgc cggaccgcag gacatgggta
     1381 aggtaatggc tgtgctgaaa ccgaagctgg cgggccgtgc agacatgaca gcggtgtcgg
     1441 gcctggtcaa agcggcgctc gccaaataag cttgcaagat gagtttgcca aataagcctg
     1501 cttaagtgct taagaaagtc tgaccaagaa aactcactaa gtgattccgc attcgtttct
     1561 tcaggacctg ctgaaccgcg tcgatatcgt cgacgtggtg ggcaagtccg tccagctgaa
     1621 gaagggcggc gcgaacttca tgggcctgtg cccgttccat aacgagaaga gcccgtcgtt
     1681 caccgtcagc ccgacgaagc agttctatca ttgctttggc tgcggcgcgc atggcacggc
     1741 aatcagtttt ctcatggagc acgccgggct cacgttcccc gaagcagtca aggatctcgc
     1801 ccagtcgtgc ggcctgaccg tgccgcagga gcagtcaatg cgcggcggcg gtggggtggg
     1861 tggagaaggt tacgcgcccg caccgagcaa agccgtcagc gtcgcgttga ccgaagtcat
     1921 gcagaccgcg tgcgagttct atcgcaagca gttgcggggc gcgcccaacg ctatcgaata
     1981 tctgaaaaag cgtggcctga cgggcgaaat cgcgttgcgc ttcgggctcg gctacgcgcc
     2041 ggacggctgg cagagcctcg aagcggcttt ccccgattac aagaacgaca atctggtgga
     2101 agcgggtctg gtgatcgtca gcgagaaaag cgacaaccag ggccagtccc gccgatacga
     2161 ccgcttccgc gaacgcgtca tgttccctat ccggaacgtg aagggcaatg tgatcggatt
     2221 tggcgggcgc gtgctcgacg gcggcgagcc gaagtacctg aattcgcccg aaacaccgct
     2281 gttcagcaaa ggcagcgagt tatacggcct tttcgaagcg cggctggcca ttcgcgaact
     2341 cgggtacgcg ctggtcgtcg aagggtatat ggatgttgtg gcgctggcgc aattgggttt
     2401 tgcgaacgcg gtcgccacgc taggcacggc ttgcacgccg atccacgtac agaaattgtt
     2461 tcgtcagaca gataccgtcg tgttcagttt cgatggcgat tcggccggcc gtcgcgccgc
     2521 gcgccgtgca ctggacgcct gtttgccgca cgcggccgac aaccgcacga tccgcttcct
     2581 gttcctgccg aaggaacacg acccggacag ctacgtgcgt gaattcggca ctgacggttt
     2641 cggcgagcag gtcgatcgcg cgatgccgct gtcgcaattc ctgctgaacg aggtcctgaa
     2701 cgacaaggag ctcgaccagc cggaaggccg cgccaaggcg ctctttgacg ccaagccgct
     2761 gctccaggcg ttaccggcga acgcgttgcg cgtgcagatc ctgcacatgc tggccgatcg
     2821 gctgaataca ccgtttggcg aaatcgcggc attgtgtgac atcgattcgc gagcggcggc
     2881 cgttgcccgg gcggcgctgc ccaagagcga gcggcgtcgc gtaaagggcc atgaacagcg
     2941 ggcgctgcgc aacctggtga tgtacccggc tatctacgcc acgctcgatc acgaaagcga
     3001 acagacgctg gtcaccatga ccgagcacgg ggaattgttc agcgaggtga tcgggcacgc
     3061 acgagaactg ggagaaacgg cggaattcca gatgctgtcg gatctgttgc gcaacgccgc
     3121 aaatgcgccg acttacgagg atatcttcca ggaaattctc gcctatgatg aaaatgtacg
     3181 ggatctgttg atgcgcgatc cggccgacga aggcgccaac gaacgcgtac aggagcagaa
     3241 aaagctgctc gcggaggagt tgcatgcg
//
LOCUS       DATGBK010000012         3734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_208224, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000012 DATGBK010000000
VERSION     DATGBK010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208224"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1081)
                     /locus_tag="VKJ77_00220"
     CDS             complement(<1..1081)
                     /locus_tag="VKJ77_00220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC43731.1"
                     /translation="MRPHAQTARILLALLPAIPTVLALVGTLVLFSLFLLVQGQPVLD
                     AVGLIFQGAFGSSFAWQSTLLRASPLMLTALCVALPAQVGLVVIGGEGALALGGMCAA
                     IVPEMLPAGTPWLIATPLMALAGMLAGAIWIGAVGALRQWRGVNETISSLLMAYIAIA
                     LFKHLVEGPLRDPASLNKPSTLPVPPSMMIGSLPGLEVHWGLFWGVLACIGAWVFVKY
                     STKGFAMRVVGGSNRAARLVGLPVNLLALAACALGGAAAGLAGMFEVAAVQGSANASL
                     LAGYGYAGILVAFAARQNPLAIIVCALMIGGIEASGSLLQRRLDLPDATTLVLQGLLF
                     ANLLAWEALGGRIAVWRVQLQAAALA"
     gene            complement(1117..2214)
                     /locus_tag="VKJ77_00225"
     CDS             complement(1117..2214)
                     /locus_tag="VKJ77_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC43732.1"
                     /translation="MTSRRTFIKDASLLALATMAPFRSVFAAGNTTVGVIYVGARGDY
                     GYNQAQASAAAIIKKLPNVKVVEEENVPETIAVQKTMEAMIEQDGATLVFATSFGYFD
                     PHVLKMAAKYPNVRFAHCGGLWKQGNPPNIASYFGYIDECQYLNGVVAGHMSKSKKLG
                     FVAAKPIPQVLRNINSFTLGAQSVDSAITTQVIFTGDWSMPVKEAEATNSLVDQGCDV
                     ITCHVDGPKVVVETAEKRGVMSCGYHASQAALAPKGYLTGAEWDWATPYKALVADAQA
                     GKPQPNVLRGGLKEGFVKMSPYGAKVTPDAKKAADTIKGSMMAGDFVIFKGPVKDNKG
                     GVAIASGTSHVQTDYTLESMNYLVAGVAGQI"
     gene            complement(2623..>3734)
                     /locus_tag="VKJ77_00230"
     CDS             complement(2623..>3734)
                     /locus_tag="VKJ77_00230"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HMC43733.1"
                     /translation="LDALRGIAALMVVVNHFILVGPLWWIPRSPLRVLALGHEAVILF
                     FILSGFVLTLQLISDRRISYRDYAIRRICRIYLPYLAVLFTAFSIVNLINIEPVKWAG
                     SWFNDIWTGSFSGREMLDHLLFIGEYKANRVLPVIWSLIYEMRISLMMPLVVYCVSRF
                     SARTCLAAALCISLVSFAFAMGRNTDQTSSPSFSGDWAMTAHFLGMFIVGATLAFHRV
                     RWQQWLDKRGRTMLVLAASLTLYFLSRLVLSITSGAIGQYIFDWCVVAGAAGMVCTAI
                     VSRRFTLVLAKRPIVFLGTISYSLYLTHTVVLLTVIHLMPASGSPWHSIVTAAVLVIP
                     VAAVTHFVVERPSILLGKFLTGRSVTASSRANQTS"
BASE COUNT          841 a         1165 c         1084 g          644 t
ORIGIN      
        1 cggcgagtgc ggcggcttgc agttgcacgc gccacacggc gatcctcccg cccagcgctt
       61 cccacgccag caggttggca aacagcaggc cttgcagcac gagcgtggtg gcatcgggaa
      121 gatcgagccg gcgttgcagc aggctgccgc tcgcttcgat cccgccgatc atcagcgcgc
      181 acacgatgat cgcgagcgga ttctggcggg cggcgaaggc gaccaggatg ccggcgtatc
      241 cgtaaccggc gagtagcgac gcgttcgcgc tgccctgcac cgccgccact tcgaacatgc
      301 cggcaagacc cgccgccgcg ccgccaagcg cgcaggctgc cagcgcgagc aggttcaccg
      361 gcaagccgac cagccgcgcc gcgcgattgc tgccgccgac cacgcgcatc gcaaagccct
      421 tggtgctgta cttgacgaag acccacgcgc cgatgcacgc aaggacgccc caaaagagac
      481 cccagtggac ttcgagcccc gggagcgacc cgatcatcat cgatggggga acgggcagcg
      541 tagagggctt gttgagactt gccggatcgc gcaacggccc ttcgaccaga tgcttgaaca
      601 gcgctatggc gatatacgcc atcaacaagc tgctaatggt ctcgttgaca ccacgccatt
      661 gccgcagcgc gccgaccgcg ccgatccaga tcgcgcccgc cagcatgccc gcaagcgcca
      721 tcagcggcgt ggcaatcagc catggcgtgc cagccgggag catctccggg acgatagcgg
      781 cacacatgcc cccgagcgcc agcgctccct cgccgccaat tacgaccaac ccaacctgtg
      841 cgggcaacgc gacgcacagc gcagtcagca tcagcggcga agcgcgcagc aaggtgcttt
      901 gccaagcgaa cgacgagccg aatgcgccct ggaaaatcag gccgacagca tccaggaccg
      961 gctggccctg caccagcagg aataatgaaa acagcaccaa ggttccgacg agcgcgagca
     1021 ccgtcgggat cgccggcaac aaggcgagca aaatgcgggc agtctgggca tggggacgca
     1081 tcacgactcc ttaaggaggt cagcaggacc tcttcatcag atctggccgg ccacgcccgc
     1141 cacgagataa ttcatgctct ccagcgtgta gtcggtctgc acgtggctcg ttccggaggc
     1201 gatcgcgacg ccacccttgt tgtccttcac cggccctttg aagatcacaa agtcgcccgc
     1261 catcatgctg cccttgatcg tgtccgcagc cttcttcgcg tcgggtgtga ccttcgcgcc
     1321 gtacggcgac atcttgacga aaccttcctt gagaccaccg cgcagcacgt tcggctgagg
     1381 cttgccggcc tgtgcatcgg cgacgagtgc cttgtacggc gtcgcccagt cccactcggc
     1441 gccggtgaga tagcccttgg gcgcgagagc agcctggctc gcgtgataac cgcaactcat
     1501 cacgccgcgc ttctccgccg tttccaccac gaccttcgga ccatcgacgt ggcaggtgat
     1561 gacgtcgcaa ccctggtcga cgagactgtt ggtcgcttcc gcttccttca ccggcatcga
     1621 ccagtcgccg gtgaaaataa cctgcgtggt gatggcggaa tcgacggact gcgcgccgag
     1681 cgtgaacgag ttgatattgc gcagcacctg cgggatcggc ttggccgcaa cgaagccgag
     1741 cttcttgctc ttgctcatgt ggccggccac cacgccattc aaatactggc attcatcgat
     1801 atagccaaaa tagctcgcaa tgttcggcgg gttgccctgc ttccacaaac caccgcaatg
     1861 cgcgaaccgg acgttcggat acttggcggc catcttgagc acatgtggat cgaagtaacc
     1921 gaacgacgtt gcgaaaacga gcgtcgcacc gtcctgttcg atcatcgctt ccatggtctt
     1981 ctgcaccgcg atggtctcgg gcacgttctc ttcttccacg accttgacgt tgggcagttt
     2041 cttgataatt gccgccgccg acgcctgcgc ctggttgtag ccgtaatcac cacgcgcacc
     2101 gacatagatc acgccgaccg ttgtgttgcc cgcagcgaac accgaccgga acggggccat
     2161 ggtcgcgagt gccaacaggc tcgcgtcttt gataaaagtg cggcggctag tcatgtcatt
     2221 cgactcctgg ttagcggtga ttgagcggtt ttctgaagac tttggacgta agcgatccag
     2281 ccgccgaaag cggtatgccg ttcgcgccgc aagagcggct aaaagagccg cgatgcgtgg
     2341 acgggtcaaa tggatcaggg ggtatggaca tgaattccgt cttgcataca agatggaatt
     2401 cattaatgca ggagctatgc caggagaaag gtgcgcttgt gtttaaggca gccaagcttc
     2461 gcggcacaag gctctccgcc gatcacacgg gctccgtgcg atggcttggt gagtccctga
     2521 cgctttagct gctggtgcgc gatgcaccgt cgagtaacgt gcgcgcacaa aagcggcgct
     2581 ccacggcgcc gcgaatcaca agccatcttc cagacttcag tttcaggacg tctggtttgc
     2641 gcgcgacgac gcggtaacgc ttcttcccgt caggaatttc cctagaagaa tcgacggacg
     2701 ctcaaccaca aaatgagtga cggcggcaac gggaatgaca agcactgccg ctgtcacgat
     2761 cgaatgccac ggcgagccag aagcaggcat caggtgaatt accgtaagga gaacgacagt
     2821 atgggtcagg taaaggctgt aggaaatcgt gcccaggaac acaatcgggc gcttggccag
     2881 caccagtgtg aaacgcctgg atacgattgc cgtgcagacc atgcccgcgg cgcccgccac
     2941 gacgcaccag tcgaagatgt actgaccgat agcacccgac gtaatcgaca gcaccaagcg
     3001 cgacaggaaa tagagcgtga gcgaagcggc gaggacaagc atcgtccgac cgcgcttatc
     3061 cagccattgt tgccagcgca cgcggtggaa agccagcgtc gcgccgacga tgaacatgcc
     3121 caggaaatgc gccgtcatcg cccagtcgcc gctgaaactt gggctgctgg tctggtccgt
     3181 atttctcccc atcgcgaacg cgaaggaaac cagggaaata cacagcgccg ctgccagaca
     3241 ggtgcgcgcg gaaaagcggc tgacgcaata cacgaccagc ggcatcatca atgaaatgcg
     3301 catctcgtag atcagcgacc agataacggg aagcacgcga ttagctttgt attctccgat
     3361 gaatagcaaa tgatccagca tttcccttcc ggagaatgat cctgtccaga tatcgttgaa
     3421 ccatgagcca gcccatttaa ccggttctat attaatcaga ttaacgatcg aaaaagcggt
     3481 aaacaaaacg gcgagataag gcagataaat ccggcaaatc cgcctgatcg catagtcgcg
     3541 atatgaaata cgtcggtccg atatcaattg aagggtcagg acaaatccgc taagtatgaa
     3601 gaataagatc accgcttcat ggccgagcgc cagcacgcgc aacggcgacc tgggtatcca
     3661 ccagagcgga ccgaccaata tgaaatgatt aaccacgacc atcagggcag ctatgccacg
     3721 caacgcatcc agct
//
LOCUS       DATGBK010000013         4452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_190, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000013 DATGBK010000000
VERSION     DATGBK010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4452
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..416)
                     /locus_tag="VKJ77_00235"
     CDS             complement(<1..416)
                     /locus_tag="VKJ77_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017331218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HMC43734.1"
                     /translation="MLMEVNGRAYGPARALTVIVCVDGCEYDYLEAAVAAGVAPFIGT
                     MLRGGSAFRADCVIPSFTNPNNLSIVTGVPPSVHGICGNYFFDPHANGGKGAEVMMND
                     PAYLRAGTILAAAAQRGEKVAVVTAKDKLRRLLGWQL"
     gene            complement(591..1430)
                     /gene="phnV"
                     /locus_tag="VKJ77_00240"
     CDS             complement(591..1430)
                     /gene="phnV"
                     /locus_tag="VKJ77_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate ABC transport system,
                     membrane component PhnV"
                     /protein_id="HMC43735.1"
                     /translation="MATEFTLPATASKPHSLKRIGAWVLMGFAALLCFWLFVLPVIVV
                     ALSSVASHWSGTIFPDGFSMRWFERLGSSDFDALTTSLEVGFGVAVLGTVLGLWLALA
                     LEGRDRHGVGAWVDTIAMMPNGVPSVVLGLSVLIAYHKKPLDISGSAAIVVLVQLALV
                     LPFCYRCAAAALRPELTILREAAASLGAPPSMVLSRVVLPQLVPAIRASLALGFALSL
                     GELGATLTVYPPGFATVPIVVVGQVNRGYYLPASALSLILLAVSLAALLLIAAKVPRR
                     RIA"
     gene            complement(1420..2319)
                     /locus_tag="VKJ77_00245"
     CDS             complement(1420..2319)
                     /locus_tag="VKJ77_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate ABC transporter permease
                     subunit"
                     /protein_id="HMC43736.1"
                     /translation="MSSLSVSEHVVDDVAHTAAKRRRERLAQWHLWFILVVVLGPLVI
                     YPLVQLLLLSVSGAHGLSFHAYTAFFGNPETSGVVGTTLGILFASATLASVLGVLLAA
                     MLFFKPFPGAKLVTRFLELFVAFPSFLVAFTLIFLYGSQGSVSIGLQRLFNLQDPPLN
                     FLFGIGGVILAEVVFYAPFVVRPTLASFATLDMRLIEAAKSLGANGWMVAFKVILPLA
                     WPGIAAGTILCFLLTLNEFGILLVLGSAHLITLPMAIYSSATVDLDLPTAAAGAVVML
                     AMSLSLYALYRRVNRRTGGRNGN"
     gene            complement(2297..3394)
                     /gene="phnT"
                     /locus_tag="VKJ77_00250"
     CDS             complement(2297..3394)
                     /gene="phnT"
                     /locus_tag="VKJ77_00250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate ABC transport system
                     ATP-binding subunit PhnT"
                     /protein_id="HMC43737.1"
                     /translation="MRTVNTLTLAPAAREAAAVNSNQHAHGGVRIDRLSVRFGTRTVL
                     DDLSLTIERGELLTVLGRSGCGKTTLLRFIAGFIEADGLAGTLTVAGRDLTHVPPFKR
                     NLGLLFQSYALFPHLSVYDNVAFGLRARRLKAGEIARRVADALKLVQLGDAGHVMPAQ
                     LSGGMQQRVALARALVIEPDVLLLDEPLSALDANLRASVRTELKALHERLPNLTIVCV
                     THDQDDALVLSDRTLLMRDGRIAQLGTPRELYDNPKDAFVARYLGAANLLPPSIMFPI
                     GDTRHDDRDHVACVRPECLSIVPLGDAQLHGTIASVEWYGAALSVSVMLDALPDQAVL
                     VTMQRAHGPMPVKGARVSLRHEVDDVVLISE"
     gene            complement(3442..>4452)
                     /gene="phnS"
                     /locus_tag="VKJ77_00255"
     CDS             complement(3442..>4452)
                     /gene="phnS"
                     /locus_tag="VKJ77_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033225 - ATPase-coupled
                     2-aminoethylphosphonate transporter activity [Evidence
                     IEA];
                     GO_function: GO:0033226 - 2-aminoethylphosphonate binding
                     [Evidence IEA];
                     GO_process: GO:0033223 - 2-aminoethylphosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC43738.1"
                     /translation="VVTVPAFAADAVVLYTADGLENLYKDVLPAFEKKEGVKVNIVTA
                     GSGEVVNRATVEKDSPKADVLVTLPPFIQQASQGGLLQPYQSVNYKNVPAIAKAPDGA
                     WATFVNNYFSFAINPEITKTAPKTFADLLHPDFSGKIAYSNPATAGDGMAVIILTSAL
                     MGEDKAFDYLKDLEKSAKFHTKGTGYLDVLLSRNEIAFANGDLQMDLDDSTNGGLSLK
                     PIFLSAKPGEAPTTFQLPYAIGLIKGGPNQAEGKKLVDYLMSKEVQSKVPDIYGIPGR
                     TDVPLAGKNGETVKQAIAGVKLIPVDWNQVMEKKAAWTTRWKSDVIGNSDKQLDVVKP
                     KS"
BASE COUNT          952 a         1410 c         1341 g          749 t
ORIGIN      
        1 agttgccagc cgagcaagcg gcgcagcttg tccttcgccg tgaccacggc caccttctcg
       61 ccgcgttgcg cagcggccgc gaggatcgtg cctgcgcgaa ggtaggccgg gtcgttcatc
      121 atcacttcgg cacccttgcc gccgttcgca tgcgggtcga agaaatagtt gccgcaaatg
      181 ccatgcaccg aaggcggcac ccccgtcacg atcgacaagt tgttcgggtt ggtgaacgac
      241 gggatcacgc agtcggcgcg aaaggcggac ccgccacgca gcatcgtgcc gataaacggt
      301 gcgacacccg ccgcgacggc cgcttccagg taatcgtatt cgcagccgtc gacgcagacg
      361 atcacggtca gcgcgcgcgc cggaccataa gcgcggccat taacttccat aagcatttcg
      421 gtggacgtgg acatgaggtt cctttccgtg atgaaccagc gctctattaa ccgttccggc
      481 taaccgcgtg actacatatt ttgatgcaca acgccaatat ttgccacatt ttttgacacg
      541 agaaagtccc gaaaagggag attttcggca gggccaagcc agctcaggga tcaggctatt
      601 cgccgccgtg ggacttttgc cgcgatcaac aacaaagcag cgagtgaaac ggccagcaag
      661 atcagcgaaa gtgccgacgc cggcaagtaa taaccacgat tcacctgccc gaccaccacg
      721 attggcacgg tcgcaaaacc cggcggatag acggtcaacg tcgcacccag ttcgccgagc
      781 gataacgcaa aacccagtgc gaggctcgca cggatcgcgg gtacaagctg cggcaagaca
      841 acgcgtgaga ggaccatcga aggcggcgcg ccgagactgg ctgccgcttc acgcaagatc
      901 gtgagttcgg ggcgcagcgc agcagccgcg catcgataac aaaagggcag cacgagtgcg
      961 agttgcacca gcactacgat tgccgccgac cccgagatat ccagcggttt cttgtgatac
     1021 gcaatcagca cggacagccc gagcacgacg ctcggcacgc cgttgggcat catcgcgatg
     1081 gtgtccaccc acgcgccgac gccgtggcgg tcacgccctt ccaatgccag cgcaagccac
     1141 aggccaagca cggtacccag caccgcgacg ccgaagccaa cttcgaggct cgtggtcaat
     1201 gcgtcgaagt cgcttgagcc caaacgttcg aaccagcgca tgctgaagcc atcggggaag
     1261 atggttcccg accagtgcga cgccacgctg gacaacgcca ccacgatcac gggcaacacg
     1321 aacagccaga agcacagcag cgcagcaaaa cccatcaaca cccatgcacc gatccgcttc
     1381 agcgaatgcg gcttcgaagc cgtggcgggc agcgtgaact cagttgccat tgcggcctcc
     1441 cgtgcgtcga ttgacccgcc tgtacagcgc atacagcgag agcgacatcg ccagcatcac
     1501 gacagcgccg gcggctgccg tcggcaagtc gagatcgacc gtggccgagc tatagatggc
     1561 catcggcaat gtgatcaaat gcgcgctgcc gagcaccagc agaatgccaa actcattgag
     1621 cgtcaacagg aaacacagga tcgtgcccgc tgcaatgccg ggccacgcga gcggcaagat
     1681 gaccttgaac gcgaccatcc agccgttcgc gccaagactt ttggcggctt cgatcaggcg
     1741 catgtcgagc gtggcgaatg acgcaagcgt gggccgcacg acgaacggcg cgtagaacac
     1801 gacctccgcg agaatcacgc cgccaatacc gaacaagaag ttgagcggcg ggtcctgcag
     1861 attaaaaagc cgctgcaagc cgatgctcac tgacccttgc gatccataca aaaagatcag
     1921 cgtgaacgcg accaggaacg acgggaacgc cacgaacaat tcgaggaacc gggtgacaag
     1981 cttcgcaccg gggaatggct tgaaaaacag catggccgcg agcagcacgc cgagcactga
     2041 agcgagtgtc gcgctcgcga acaggatgcc gagcgtcgtg ccgaccaccc cgcttgtctc
     2101 gggattgccg aagaacgcgg tgtaggcatg aaagctcagg ccatgcgcgc cgctcacgct
     2161 gagcagcagg agctgcacaa gtggatagat gaccagcgga cccagcacga ccaccaaaat
     2221 gaaccacagg tgccactgcg ccagccgttc gcggcgccgc ttggcagcgg tatgcgcgac
     2281 gtcgtcgact acgtgctcac tcactgataa ggacgacatc gtcaacctca tggcgtaggg
     2341 aaacgcgcgc gcccttcacg ggcatcgggc cgtgggcgcg ctgcatggtg acgagcacgg
     2401 cttgatcagg cagcgcgtcg agcatgactg atactgacaa ggctgcgccg taccactcca
     2461 ccgaagcgat ggtgccatgc agttgggcat cgccaagcgg cacgatcgaa aggcactcgg
     2521 gacgcacgca tgcaacatgg tcgcgatcgt cgtgacgggt gtctccgatg gggaacatga
     2581 tggacggcgg caacaggttg gccgcgccaa gatagcgtgc gacgaatgcg tccttcgggt
     2641 tgtcgtagag ttcgcgcggc gtaccgagtt gcgcaatgcg gccatcgcgc atcagcagcg
     2701 tgcggtcgga aagcacgagc gcgtcgtcct gatcgtgcgt gacacacacg atggtcaggt
     2761 tcggcaaacg ctcatgcaac gccttgagtt cagtgcgaac tgaagcgcgc aggttggcat
     2821 cgagtgcgga cagcggctcg tccagcagca gcacgtccgg ctcgattacc agcgcccgcg
     2881 ccagggccac gcgctgctgc atgccgcccg acaactgcgc gggcatcacg tgccccgcgt
     2941 cgccgagctg cacgagcttg agcgcatcgg ctacgcgccg tgcgatctcc cctgctttca
     3001 gacgccgcgc ccgcaaacca aacgcgacgt tgtcgtacac cgacagatgc ggaaacagcg
     3061 cataactttg gaacagcaag ccgagattgc gcttgaacgg cggcacgtgc gtgaggtcac
     3121 gccctgccac cgtcaacgtt cccgccagcc catccgcctc gatgaaaccc gcgataaacc
     3181 gcagcagcgt ggtcttgcca catccgctgc ggccgagcac ggtaagcagc tcgccgcgct
     3241 cgatggtcag cgacaggtca tcgagcacag tgcgcgtgcc gaagcgaacg ctcaggcggt
     3301 cgatacgcac gccgccgtgc gcgtgctgat ttgaattcac ggcagcggct tcacgagcgg
     3361 ccggagccag cgtcaaagtg ttcacggttc gcatcctcga tagcttgggg aaaacaggac
     3421 gagcgcgaag atcaaagaag ctcaggactt cggcttgacg acatcgagct gtttgtccga
     3481 gttgccgatc acgtcgcttt tccagcgcgt ggtccatgca gcctttttct ccatcacctg
     3541 gttccagtcc accggaatca gcttcacgcc cgcgatggcc tgcttgaccg tctcgccgtt
     3601 cttacccgcc agcggcacgt ccgtacgccc cggaatgcca tagatatccg gcaccttcga
     3661 ctgcacttcc ttcgacatca ggtagtccac cagcttcttg ccttcagcct ggttcgggcc
     3721 gcccttgatc aggccgattg cgtagggcaa ctggaacgtg gtcggtgcct cgccgggctt
     3781 ggccgagagg aagatcggct tgagcgagag gccgccgttg gtcgagtcgt ccaggtccat
     3841 ctgcaggtcg ccgttggcga acgcgatctc gttgcgcgag agcaggacgt cgagataacc
     3901 cgtgcccttg gtgtggaatt ttgcgctctt ttccagatcc ttcaggtagt cgaacgcctt
     3961 gtcttcgccc atcagcgcgc tcgtcaggat gatcacggcc atgccgtcgc cggcagtggc
     4021 cggattcgaa taggcaatct tgccgctgaa gtcgggatgc agcagatcag caaaggtctt
     4081 cggcgcggtc ttcgtgattt cagggttgat cgcgaacgag aaatagttgt tcacgaaggt
     4141 cgcccaggcg ccgtccgggg ctttggcgat tgccggcacg ttcttgtagt tgacgctctg
     4201 gtacggctgc agcaagccgc cttgcgacgc ctgctgaatg aacggcggca gcgtgacgag
     4261 cacgtccgct ttcggtgaat ccttctccac agtcgcgcga ttcacgactt ccccgctacc
     4321 cgcggtcacg atgttgacct taacgccttc cttcttttcg aaggccggca atacgtcctt
     4381 gtacaggttt tccagaccgt cggcggtgta cagcacgact gcatcggccg caaaagccgg
     4441 cacggtcacg ac
//
LOCUS       DATGBK010000014         2703 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_162139, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000014 DATGBK010000000
VERSION     DATGBK010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162139"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            295..492
                     /locus_tag="VKJ77_00260"
     CDS             295..492
                     /locus_tag="VKJ77_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43739.1"
                     /translation="MFICRNQPCGAEWQLADVLIKNEGQGLMFRCPMCGARNKVLRHD
                     APDGTITYEQDNSVPPKPAAK"
     gene            506..1888
                     /gene="dbpA"
                     /locus_tag="VKJ77_00265"
     CDS             506..1888
                     /gene="dbpA"
                     /locus_tag="VKJ77_00265"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003724 - RNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HMC43740.1"
                     /translation="MTTPTSFSALPLSPAMLANLEQLGYLTMTPIQAASLPIALAGHD
                     LIAQAKTGSGKTAAFALPLLAKIDPRLFSVQALVLCPTRELADQVTQEIRRIARAEDN
                     IKILTLCGGSPMRPQIASLEHGCHIAVGTPGRIMDHLERGTLPLTALKTLVLDEADRM
                     LDMGFFDDIVAVVKQCPKDRQTLLFSATYPEGIAKLSQQFLRKPQEVKLTEQHTNSKI
                     KQRFYEVHDNERLHAVGQLLDHYQPVSTLAFCNTKQQCRDLLDVLVAQGFNALALHGE
                     LEQRERDQVLVQFANRSCSVLVATDVAARGLDITQLEAVINVDVTQDPEIHVHRIGRT
                     GRADQEGWALSLASMNEMARVSSIEQAQKKEVEWHKLSELTPATPGHLQPPMATLQIL
                     GGRKEKIRPGDVLGALTGDAGFEGSQIGKINVTDMVTYVAVARDIADQAVKKLSAGKV
                     KGKKVKVRRI"
     gene            1994..2590
                     /locus_tag="VKJ77_00270"
     CDS             1994..2590
                     /locus_tag="VKJ77_00270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HMC43741.1"
                     /translation="MSRYSRVVVAVLSTLLLGACISSPPNPNPRANVEPKLASVDLPR
                     YMGRWYIVANIPYFAEDNFVGSYAQWKLRDDGEIDDSYYAHKGSFDAPLKHYQFTDSI
                     VPGTNNAEWSVRIFWPIYASQQTLYVDPDYQYTILGYPGKKLGWIFARSPDISDAKYH
                     ELLGRLDEMGYDTSRFRRVPQTPEQIGKPGFHSPGDKD"
BASE COUNT          596 a          816 c          779 g          512 t
ORIGIN      
        1 cgtgagtgcc caagaaagta ctggccgagg tgccagtccg aggtgtgcag gattcgcatc
       61 ggggaggtgg gttgaaggcg ttgccgcgca tcgttttagt ggctgccagt ttagccgatc
      121 gaccccgccc aagcgccgga atgggctggt gaagcctggg aaaacgccgc aaaacgaggc
      181 aattgcgccg tgtacgcgta cacttcggct tctaattgcg cgtaaaacag cgcgcgccgg
      241 cctcgccgat gcccgtttca cgccgcaacc ccatcaatta cgctcaaatc aatcatgttt
      301 atctgccgaa accagccgtg cggcgccgaa tggcaactcg ccgatgtgct catcaaaaac
      361 gaaggccaag gcctgatgtt ccgctgcccc atgtgcggcg cgcgcaacaa ggtgctgcgc
      421 cacgacgcgc ccgacggcac gatcacctat gagcaggaca attcggtccc gccgaaacct
      481 gccgcgaaat aagtaaaaca cgctcatgac cacgcctacc tctttcagcg ccctgccgct
      541 ttcgccggcc atgctggcga acctcgaaca actcggttat ctgacgatga ccccgatcca
      601 ggccgccagc ttgccgatcg cgcttgcagg ccacgatctc atcgcgcagg cgaagacggg
      661 cagcggcaag acggccgcat tcgcgttgcc gctgctcgcg aaaatcgatc cgcggctttt
      721 ttccgttcag gcgctcgtgt tgtgcccgac gcgcgaactc gccgatcagg tcacacagga
      781 gattcgccga attgcccgcg cggaggacaa catcaagatc ctgacgctgt gcggcggctc
      841 gcccatgcgc ccgcagatcg cgagtcttga acatggctgc catattgccg tgggaacgcc
      901 tggccggatc atggatcacc tcgaacgcgg cacgctgccg ttgaccgcgc tcaagacgct
      961 ggtcctcgat gaagccgatc gcatgctcga catgggtttc ttcgacgaca tcgtcgcagt
     1021 agtcaaacaa tgtccgaagg atcgccagac gctgctgttt tccgcgacgt atccggaagg
     1081 catcgcgaaa ctgagccagc aattcctgcg caagccgcag gaagtcaagc tcaccgagca
     1141 gcacacgaat tcgaagatca agcagcgttt ctacgaagtc cacgacaacg aacgcctgca
     1201 cgccgtaggc cagttgctcg atcactatca gccggtcagc acgctcgcgt tctgcaacac
     1261 gaaacagcaa tgccgcgact tactcgatgt tctcgtcgcg caaggtttca acgcgctcgc
     1321 gctgcatggc gagctggagc aacgcgaacg cgatcaggtg ctcgtgcagt ttgccaatcg
     1381 tagttgctct gtgctggtcg cgaccgacgt tgccgcacgt ggcctcgata tcacgcaact
     1441 ggaagccgtc atcaacgtcg atgtcacgca ggatcccgag atccatgtgc accgcattgg
     1501 tcgcacgggc cgcgcggacc aggaaggctg ggcgctgagc ctcgcgagca tgaatgaaat
     1561 ggcacgcgtg agctcgatcg aacaggcgca gaaaaaggaa gtggaatggc acaagctgag
     1621 cgaattgacg ccggcgacgc cgggtcatct tcagccgccc atggccacgc tgcaaatcct
     1681 cggcggccgt aaagaaaaga ttcgtcccgg tgatgtcctc ggcgcgctga ccggtgacgc
     1741 cggttttgaa ggctcgcaga tcggcaagat caacgtgacg gacatggtca cgtacgtagc
     1801 ggttgcgcgg gacattgcgg atcaggcggt gaagaagctg tcggcgggca aagtgaaggg
     1861 caagaaggta aaggttcggc gtatctaatt tggagcgccg ggcctgcaat ttgcacccat
     1921 gaatcgatga aaccagtcag ggcggatatg cgtatgcatt catatccgcc cttaatcgat
     1981 accttggtgc cccatgtccc gctattcgcg cgttgttgtt gccgttttgt ccacgctgct
     2041 attgggcgcg tgcatctcct ccccacccaa ccccaatcct cgtgcgaatg tggagccgaa
     2101 gctcgcctcg gttgatctgc cgcgttatat gggacgttgg tacatcgtcg cgaatattcc
     2161 gtatttcgcc gaagacaatt tcgtcggcag ttacgcgcag tggaaactgc gcgatgacgg
     2221 cgaaatcgac gattcgtatt acgcgcacaa gggctcattc gacgccccgc tcaagcatta
     2281 tcaattcacg gattcgatcg ttcccgggac gaataacgcc gaatggagcg tgcgcatttt
     2341 ctggccgatc tacgcgagcc agcaaacgct ttatgtcgat ccggattatc agtacacgat
     2401 cctcggttat ccgggcaaga agctaggctg gatcttcgcg cgctcgccgg acatcagcga
     2461 cgcgaagtat cacgagctgc tgggccgcct ggacgaaatg ggttacgaca cctcgcgatt
     2521 ccgtcgcgtg ccgcagacgc cggaacaaat cggcaagccc ggcttccatt cccccggcga
     2581 taaagactga tgcccccaat cagcgaaact cataacctca accaacgaaa caagggatag
     2641 gagcaatctg atagctggag aggaaggcag cgcttagcat cgagaggtta tccacttcga
     2701 tga
//
LOCUS       DATGBK010000015         1606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92732, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000015 DATGBK010000000
VERSION     DATGBK010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92732"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1149)
                     /locus_tag="VKJ77_00275"
     CDS             complement(<1..1149)
                     /locus_tag="VKJ77_00275"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HMC43742.1"
                     /translation="MAPKRRTELDAIFAAEGLLARQIDGYRSRASQVDMARAVAAAME
                     ASGRAMPEPAMFDAQRRSARKLGPSDAPVVHEEGADELGVATASTGIDGGENTLIVEA
                     GTGTGKTFAYLVPAMLWGGKVIVSTGTKHLQDQLFQRDIPTVRDALAVPVSVAMLKGR
                     ANYLCHYYLQRTADSGRLPTRQDTSHLQEIIRFAKITRTGDKAELASVPENSPVWPMV
                     TSTRDNCLGQECPQYKECFVMQARREAQQADIVVVNHHLFFADVMLRDTGMAELLPTA
                     NTIIFDEAHQLPETATLFFGETVSTTQFLELARDAVAEGLSHARDFSDWTKLGAALER
                     AARDVRLAFKEDSVRMSLGQLADDHPLFDALDTLEEHLDALTKALGAHA"
     gene            complement(1375..1602)
                     /locus_tag="VKJ77_00280"
     CDS             complement(1375..1602)
                     /locus_tag="VKJ77_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF465 domain-containing protein"
                     /protein_id="HMC43743.1"
                     /translation="MHAYPAAAVDTGTIRERIGQLEAEHHGLDSLIGKMAEVPGINDF
                     EIRRLKKRKLKVKDTIILLQLQLEPDTRLNP"
BASE COUNT          291 a          500 c          488 g          327 t
ORIGIN      
        1 agcgtgcgcg ccaagcgcct tggtgagtgc atcaagatgc tcttcaagcg tgtcgagcgc
       61 gtcgaatagc ggatgatcgt cggcaagctg gccaagcgac attcgcaccg aatcttcttt
      121 aaatgccagg cgcacgtcgc gcgccgcacg ttccagcgca gccccgagtt tcgtccagtc
      181 agagaaatcg cgggcgtggc tcaagccttc cgctacggcg tcacgcgcga gctcgagaaa
      241 ctgcgtagtg gataccgttt cgccgaaaaa cagcgtcgcg gtttcgggca actgatgcgc
      301 ttcgtcgaag atgatggtat tcgccgtcgg cagcaactcg gccatgccgg tgtcgcgcaa
      361 catgacatcg gcgaaaaaca gatggtggtt taccaccacg atatccgcct gctgcgcctc
      421 acgccgcgcc tgcatcacga aacactcttt gtactgcggg cattcctggc cgaggcagtt
      481 gtcacgtgtg gacgtgacca tcggccagac gggcgaattc tcgggcacgc tcgcaagttc
      541 ggctttgtcg ccggtgcgcg taatcttggc gaaacggatg atttcctgca gatgcgacgt
      601 gtcctggcgc gttggcaagc gaccgctgtc ggccgtgcgc tgcaggtagt agtgacacag
      661 gtaattcgcg cgccctttga gcatggcgac cgacaccggc acggcgagcg cgtcgcgcac
      721 cgtaggaatg tcgcgctgga atagctggtc ctgcaaatgc ttcgtgccgg tcgagacgat
      781 cactttgccg ccccacagca tggccggtac gagatacgcg aaggtcttgc ccgtacccgt
      841 acccgcttcc acgatcagcg tgttctcgcc accgtcgatt cccgtcgatg ccgtcgccac
      901 acccaactcg tccgcacctt cctcatgaac gacaggcgca tccgatggcc cgagcttgcg
      961 cgcggaacgg cgttgcgcgt cgaacatcgc gggttcgggc atggcgcgcc cggacgcctc
     1021 catggcggcc gctacggcgc gcgccatgtc gacctgtgaa gcacgcgagc gataaccatc
     1081 aatttgccgc gccaacagac cctcggcggc aaaaattgcg tcgagttcag tgcggcgctt
     1141 cggtgccagc gtgagcgaaa gcgtggtgtc gacgacaccc gccttcgcgg ccggcttcag
     1201 cacggattcc gcgttctctg tgagggcatt gtcgggcgaa ttcaaaggga cgttcctgct
     1261 tgtgttccgg ctaatgactc gtgtcagtaa gcccggcttg ctacccttgc cgacgaggcg
     1321 ccaagggcgg ctggcgtaaa agttcttccg gcccgcgcgt gcaccaagtg tgcgtcaagg
     1381 atttaagcgc gtgtccggtt ccaactgcaa ttgcagcagg atgatggtgt ccttgacctt
     1441 gagcttgcgc ttcttcaggc gcctgatctc gaagtcgttg atgccgggaa cctcagccat
     1501 cttgccgata agactatcca ggccgtgatg ctccgcttcc agctgcccga tccgttcgcg
     1561 gatcgtgcct gtgtcgactg ctgctgcagg atatgcatgc atattc
//
LOCUS       DATGBK010000016         3059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_208241, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000016 DATGBK010000000
VERSION     DATGBK010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3059
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208241"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..491
                     /gene="radC"
                     /locus_tag="VKJ77_00285"
     CDS             <1..491
                     /gene="radC"
                     /locus_tag="VKJ77_00285"
                     /inference="COORDINATES: protein motif:HMM:TIGR00608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HMC43744.1"
                     /translation="AEAAQLREFEIDQRTLVLFRAVRESGRRLAERKVKDMPVLTNWQ
                     QLIDYCHAALAHEKTEQFRILFLDRKNVLIADEVQQRGTIDHTPVYPREVVKRALDLG
                     AAALILVHNHPSGDPKPSRDDIEMTKEIRKAAEALGISIHDHLVIGRKGHASFRSLGL
                     LC"
     gene            636..1430
                     /locus_tag="VKJ77_00290"
     CDS             636..1430
                     /locus_tag="VKJ77_00290"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HMC43745.1"
                     /translation="MPKFLRIGIHQSNVSGYTSKAWWIRRVGSTVFLKWGPVEVNGVG
                     EGRRIYWTVPPREKAIRCGTVQPAKDYVKNAIARRGSHRYEPLAGNIAIRRRPANHGT
                     ELEQVSATILFVDIVRSTEKAARLGDSRWTQVMNHYYAAVRRELKTLRGKEVVTTGDG
                     LLATFEAPAAAVRCATAIREAVRTLGLEIRAGLHVGEYKVSGPDVSGLAFHIGARVAA
                     KARTGEVLVSSAVKDLMSQSEIRFKDRGVHQLKGVPKRWRLYRVDR"
     gene            1596..>3059
                     /locus_tag="VKJ77_00295"
     CDS             1596..>3059
                     /locus_tag="VKJ77_00295"
                     /inference="COORDINATES: protein motif:HMM:NF017775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SbmA/BacA-like family transporter"
                     /protein_id="HMC43746.1"
                     /translation="MTQDTAADSPRPKTGIRDHYDFLRRFVLFALPFWSAERKWVNRC
                     RLALVAALTVAQVAVQVGLNSWSARLYNALEARQLDTFLEQIVTFALLLLASLAVFSI
                     SLYVRRRLQFAWRVWLTKTTLSVWMAQGRHYQLGLIAGDHDNPDGRIAEDIRVTTESA
                     IDLGQSLFYCILLLGTFVDVLWTLSGVVHVGIGGVVIAIPGFMVFIALAYSATGTSMA
                     LWAGLPLVGASNLRQTVEANFRFGLVRAREYSESIALIGGDADERTHLQELLRGVRRG
                     WESQTYGLTRIILFTTAYNVLASPFPLLVAAPRYIMGLISLGTLMQTAQAFQQVTAAL
                     SFPVDNLSTIAQWQASVERVMALQDALGRLQEELGENRIEVKHEGSSLQFTGVRVMEH
                     DAVPLMHELTAEIGPGQHVLIEGETQLCHKLILAVAGLWPWGAGKVTLPAGANIFIAS
                     DRPYLPVGALGEAVCYPLTLGVCVPDDINSALRRVGLG"
BASE COUNT          569 a          910 c          967 g          613 t
ORIGIN      
        1 ccgccgaagc agcccagctg cgcgagttcg agatcgacca gcgtacgctg gtactattcc
       61 gcgccgtccg cgagtcgggc cgcaggctgg ccgagcgcaa agtcaaggac atgccggtgc
      121 tgaccaactg gcagcagctg atcgactatt gccatgccgc tctcgcgcac gagaagaccg
      181 agcagttccg catcctgttc ctcgaccgca agaacgtgct gatcgccgac gaggttcagc
      241 agcgcggcac gatcgaccat acgccggtct atccacgcga ggtggtgaag cgcgccctcg
      301 atctcggcgc ggccgcgctt atcctggtgc acaaccatcc gtcgggcgac cccaagccct
      361 cgcgcgacga catcgagatg acaaaagaaa tccgcaaggc cgccgaagcg ctcggcatct
      421 cgatccacga tcacctggtg atcggccgca agggacacgc cagtttcagg agcctcgggc
      481 tgctgtgtta acgctcagat ggggcttgat tgcgaacgcg gattgatacg cgagtcatac
      541 gcaatatttg attgggaaca ttgttgccaa agcagaaatg cccgatcaca ttcgactctt
      601 gacgaggcca cagcgaatag tcgcgccgca cgcacatgcc caagttcctt cgcatcggaa
      661 tccatcaatc gaacgtttcc ggatacacgt cgaaggcatg gtggattcgc cgggttggct
      721 cgacggtttt cctgaagtgg ggccctgtcg aggtcaatgg cgtgggagaa ggacgaagga
      781 tttactggac ggttccaccg cgtgagaaag caattcgttg cggcacggtg cagcctgcca
      841 aagactacgt aaaaaacgca atcgcacggc gaggcagcca tcgctatgaa ccgctggctg
      901 gaaatattgc gatccggcgc cgccctgcca atcatggcac cgaactcgaa caagtgtctg
      961 ccacgatcct gtttgtcgac atcgtccggt ccacggaaaa agccgcgcgg ctcggcgatt
     1021 cgcgttggac acaggtcatg aatcactact acgccgccgt ccgcagagag ctgaagacct
     1081 tgcgcgggaa ggaagtcgtg acgacggggg atgggctgct cgcgaccttc gaggcgccgg
     1141 cagcggcggt ccggtgtgcg accgcaatcc gcgaggcggt acgcacgctt gggctggaga
     1201 tcagggcggg actacacgtg ggtgaataca aggtgagcgg gccggatgtg tccggtctcg
     1261 cgtttcacat cggcgcgcgc gtcgccgcga aagcgcgcac aggcgaagtc ctggtctcga
     1321 gcgcggtcaa ggatctgatg tcgcagtctg aaatccgatt caaggatcgc ggtgttcacc
     1381 aactcaaagg cgtaccgaag cgatggcgcc tttatcgcgt cgatcggtaa gcgcccccgc
     1441 attgtccctt tccacgtcga cgggcagccc tcggacgcat actttctttc cgtttgaagc
     1501 gcttctgggg gagaacatgg cgcgtgtgtt cgcatttctg tcggccgccc tggcgccttt
     1561 cggcaaggct gcgctagacg tggcgagctg agcccatgac gcaggatacg gcggccgaca
     1621 gtccccgccc caagacggga atacgcgatc actacgactt tctaaggcgt tttgtccttt
     1681 tcgccctgcc cttctggtcg gcggagcgta aatgggtgaa ccgctgccgt ctggcattgg
     1741 tcgcggccct gacggttgcg caggttgcgg tccaggtcgg cctgaattcc tggtcggcgc
     1801 ggctttacaa cgcgctggaa gcgcgccagc tcgatacgtt cctggagcaa atcgtgactt
     1861 tcgcgcttct gcttctggca agcctcgccg tgttctccat atcgctttac gtcaggcggc
     1921 gcctgcaatt cgcctggcgt gtctggctca cgaaaaccac gctgtcggtt tggatggcgc
     1981 aaggacgaca ctatcagctc ggcctgatcg cgggcgacca tgacaatccg gacgggcgaa
     2041 tcgccgagga tattcgcgtg acgaccgagt cggccatcga tctgggtcag tccttgtttt
     2101 actgcatttt gctcctgggg acattcgtcg acgtgctgtg gacgctctcc ggtgtcgtgc
     2161 atgtgggaat cggcggggtg gtcattgcca tccctggctt catggtcttc atcgcacttg
     2221 cctattcggc gaccggcacc agcatggctc tctgggcggg gctaccgttg gtcggcgctt
     2281 ccaatctgcg gcagacggtg gaggccaatt tccggttcgg tctggtgcgt gccagggagt
     2341 attcggaaag catcgccttg atcggcggcg atgccgatga gcgaacacat cttcaggagt
     2401 tgctgcgtgg cgtgagacgc ggctgggaga gccagaccta cggtttgacg cgcatcatcc
     2461 tcttcaccac ggcgtacaac gtgctggcaa gcccgttccc gcttcttgtc gcagcgccgc
     2521 gctatatcat ggggttgatc tcgctcggca cgttgatgca gacggcgcag gcgtttcagc
     2581 aagtcaccgc cgcgctgtcg tttccggtgg acaatctttc gaccatcgcc caatggcagg
     2641 cctccgtcga acgcgtgatg gccctgcagg atgcattggg caggctccag gaggagctcg
     2701 gcgagaaccg cattgaggtg aagcatgagg gctcctcgct gcaattcacc ggggtgcgcg
     2761 tgatggagca cgatgccgtg ccgttgatgc acgaactcac tgcggagatc ggcccaggcc
     2821 aacacgtgct gatcgaaggc gagacgcagc tatgccacaa actcattctt gccgttgcag
     2881 ggctttggcc gtggggcgcc ggaaaagtga cactgccagc gggcgcaaac attttcattg
     2941 ccagcgaccg gccctatttg cccgtgggag ctttgggcga agccgtttgc tacccgctga
     3001 cacttggtgt gtgtgtgccg gacgacatca attcggcgtt gcgtcgcgtg ggcctgggc
//
LOCUS       DATGBK010000017         2205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_277764, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000017 DATGBK010000000
VERSION     DATGBK010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277764"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..1164
                     /gene="eutB"
                     /locus_tag="VKJ77_00300"
     CDS             199..1164
                     /gene="eutB"
                     /locus_tag="VKJ77_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyectoine utilization dehydratase EutB"
                     /protein_id="HMC43747.1"
                     /translation="MSVLSLADVYRARHRIGGRVTHTPLLASASLSRIAGTEVFLKLE
                     TTQPTGSFKLRGATNTLADLAERGIMKVVTASTGNHGRAVAYAARALGMEAAVCMSAL
                     VPKNKVDAVTALGARVVIAGRSQDEAQVEALRLAREEGFAFAPPFDNLNVIAGQATIG
                     LEIMEALPDTACIVVPLSGGGLFSGVAFAAKRICSDVAMIGVSMERGAAMHASLAAGR
                     PVLIDEVETLADSLGGGIGLDNEHTFALTQELVDRVVLLDEASIARGIVHAYREERLV
                     IEGAAAVGIAALLDGRIELKGGPIVLVISGANIDIGLHRRLIQEA"
     gene            1166..2158
                     /locus_tag="VKJ77_00305"
     CDS             1166..2158
                     /locus_tag="VKJ77_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclodeaminase"
                     /protein_id="HMC43748.1"
                     /translation="MSATTLLGEARLRALVPLDLAAIDQIESAFLSLATEAVAMPPVL
                     RLDLPEHAGEVDVKTAWLPRFDSFAIKVSPGFFNNPALGLPSLNGLMLVLSARTGLTE
                     AVLLDNGYLTAVRTAAAGAVAARWLARKDARRVAVIGAGEQARLQLEALRLVREIDHV
                     TVWARDMERARSFAKGTHGIRCEVATSVHEALALADIAITTTPSRSPLIHAEDLQPGL
                     HITAMGSDAEHKNELAPAVLVAGRYICDRLQQTRILGELHHAIEAGVIAESTQFGELG
                     HVIAGSCPGRMHDDDITVCDLTGTGAQDTAIAALALQRARTQDAGIIFNNDVTL"
BASE COUNT          424 a          646 c          701 g          434 t
ORIGIN      
        1 gccgaagtgg gggataacac ctttaaaact gcgctcgaaa ccattggaga agtgtttgag
       61 cagtatccgc atgtgcacga tttcagttga tccggcatca acgttccgca cgcgttgaat
      121 cgattgaact aggacattaa aaagcgcttt ttaggacatt agactcgatc gcatccactt
      181 catcttgcga ttccgttcat gtctgttctc tcgcttgccg atgtctatcg cgcgcgtcac
      241 cgtatcgggg ggcgtgtgac acacacgccg ctgctcgcgt cggcgtcgct gtcgcggatc
      301 gccggcacag aagtcttcct gaagctcgaa accacgcagc cgaccggcag cttcaagctg
      361 cgtggcgcga ccaacacgtt ggccgacctc gctgagcgcg gcatcatgaa ggtggtcact
      421 gcgtcgacgg gaaatcatgg gcgtgccgtc gcgtacgccg cgcgtgcact cggtatggag
      481 gcggccgtgt gcatgtcggc gctcgtgccc aagaacaagg tcgatgccgt caccgcactc
      541 ggcgcgcgtg tcgtgatcgc gggcaggagt caggacgaag cacaggtgga ggcgttgcgt
      601 cttgccagag aagaaggctt cgcattcgcc ccgccttttg acaacctcaa tgtgattgcg
      661 ggccaagcga ctattggcct ggagatcatg gaggccctgc cggacactgc gtgcattgtc
      721 gtgcccttgt cgggcggcgg cttgtttagc ggcgtcgcgt tcgcggccaa gcggatctgt
      781 tccgacgtcg cgatgatcgg cgtcagcatg gaacgcggcg ctgcaatgca cgcgagcctc
      841 gcggcgggga gaccggtgct tatcgatgag gtcgagaccc ttgcggattc cctcggcggc
      901 ggtatcggcc tggataacga acataccttc gcactgacac aagaactggt ggatagagtc
      961 gtgctgctgg acgaagcgtc cattgcacgc ggcatcgtgc atgcgtatcg cgaagagcgg
     1021 cttgtgatcg aaggggcggc ggcggtgggc atcgccgcgc tgctcgacgg acgtatcgag
     1081 cttaagggcg gtccgatcgt actggttata agcggcgcga atatcgatat cggactgcat
     1141 cgccggctga tccaggaggc ttgatatgtc cgcgaccaca ctcctcggcg aagcccggct
     1201 acgggcactc gtgccactcg atctcgccgc gatcgaccag attgaatctg cattcctttc
     1261 gctcgcgacg gaagcggtgg ccatgccgcc ggtccttcgt ctcgaccttc ccgagcatgc
     1321 cggcgaagtc gatgtaaaga cagcgtggct gccgcgtttc gatagttttg ccatcaaggt
     1381 cagtcccggc tttttcaaca atcctgcgct cggtttgccg agtctcaatg gcctcatgct
     1441 ggtgttgtcg gcgcgcaccg gattgactga ggcggtgctg ctagacaacg gttatctcac
     1501 tgcggttcgc accgcggcgg cgggtgccgt tgccgcgcgt tggctcgcac gcaaggacgc
     1561 aaggcgtgtg gccgtgatcg gggcgggcga gcaggcacgc ctccagttgg aggcgttacg
     1621 actggtccgc gagatcgacc acgtcaccgt ctgggcacgc gatatggaac gtgcgcggag
     1681 ctttgccaag ggtacgcacg gcattcgctg cgaggtcgcc acaagtgtgc atgaagcgct
     1741 tgcgctcgcc gatatcgcca tcacgaccac accaagcaga agtccgctca tacacgctga
     1801 agacctgcag ccgggcttgc atatcaccgc gatgggatct gacgccgaac acaagaatga
     1861 gctcgcgccg gcggttctcg tcgccggacg ctatatctgc gaccgtcttc agcaaacgcg
     1921 cattctcgga gagcttcatc acgctataga agccggcgtg attgccgaga gcacccaatt
     1981 tggcgagttg ggacacgtca ttgcgggcag ttgcccgggg cgcatgcacg acgatgacat
     2041 caccgtctgt gacctgaccg gaaccggtgc acaggacacg gcgatcgccg cattggcgct
     2101 gcaacgcgcg cgtacgcaag acgcagggat catctttaac aacgacgtga cgctctgaga
     2161 ggggacgatg tcattcatga cgcaacaagc acaagagcag ggaag
//
LOCUS       DATGBK010000018         1603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_209, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000018 DATGBK010000000
VERSION     DATGBK010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1603)
                     /locus_tag="VKJ77_00310"
     CDS             complement(<1..>1603)
                     /locus_tag="VKJ77_00310"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HMC43749.1"
                     /translation="SLSLMRDLDAYRSALGEILPEISWYETSGVLTPPNVREARASHI
                     NALESGLRAQFDYEPDMQGAFYLLGESARIAKRDAQSAFERAAIDKPGAARDWTQQAV
                     RRLAEDQQSLDIELAVLRAREADSLAATLNESTRASRHALILLILTMLAGGGALIYTF
                     ARHEKSARDKLRIARAMQRSNERFRDLFDAHPVPMWIVDAATYRFVAVNPAALAHYGY
                     NELEFLSMSVPDLHADDDFGRFATLLARHTRSHTGSQPRQTGAQRPAGVWRHKRRDGA
                     QVSADISSHSLTYSGHPGIFMLANDVTDRINAETEARRSKQMLESLIDNIPQRIFWKD
                     LESRYLGCNQAFARDAGLASKEQVVGMTDSELPWWRSAAQIREDDCRVIATGQPLMNL
                     ERDVERDDEVRASITSKMPLLDGAGRIIGVLGSYDDTTERKRAELALRLQSRALDACV
                     NAVLITGTSATGNVIEYANPAFKRITGYDPADIVGRDCRFLQRDDLDQEGLQTIRTGL
                     AANREASAVLRNYRKDGVLFWNQLF"
BASE COUNT          274 a          509 c          522 g          298 t
ORIGIN      
        1 atgaacagct gattccagaa cagcacgcca tccttacgat aatttcgcaa aaccgcgctg
       61 gcttcgcggt tcgcggcgag acccgtacgg attgtctgca gcccttcctg gtcgagatcg
      121 tcgcgctgaa ggaaacggca atcgcggccc acgatatcgg ccgggtcgta acccgtaatg
      181 cgcttgaacg ccggattcgc gtattcgatc acgttgcccg tggcgctcgt gccggtgatc
      241 agcacggcgt tcacgcaggc atccagcgcc cggctttgca ggcgcagcgc cagttccgcg
      301 cgcttgcgct cggtcgtgtc gtcgtacgaa cccagcacgc cgataatgcg ccccgccccg
      361 tcgagcagcg gcatcttgct ggtgatcgac gcgcgcactt catcatcgcg ctcaacgtcg
      421 cgctccaggt tcatcagcgg ctggccggtc gcaatgacgc ggcagtcatc ctcacgaatc
      481 tgcgcggccg accgccacca gggcagttcg gaatccgtca tgccgaccac ctgttctttg
      541 ctggcgagac cggcatcgcg ggcaaacgct tgattgcagc ccagatatcg cgactcgagg
      601 tccttccaga agatccgctg cggaatattg tcgataagcg attccagcat ctgcttcgaa
      661 cgccgcgcct cggtctcggc attaatgcgg tcggtgacat cgttggcgag catgaaaatg
      721 cccggatgcc ccgaataggt cagcgagtgc gatgagatgt cagcgctcac ctgcgcgccg
      781 tcgcggcgct tgtgccgcca gacgccggcc ggccgttgcg cgcccgtctg gcgcggctga
      841 ctgcccgtat ggctgcgcgt gtggcgcgcg agaagtgtgg cgaaccggcc gaagtcgtcg
      901 tcagcgtgca ggtcgggcac gctcatcgac aggaattcga gttcgttgta gccgtaatgc
      961 gcaagcgccg ccggattcac cgcaacgaag cgatacgtgg cggcatcgac aatccacatg
     1021 gggaccggat gggcgtcgaa cagatcgcgg aaacgctcgt tgctgcgctg cattgcccgg
     1081 gcaatgcgca acttgtcgcg cgccgatttc tcgtggcgcg cgaaggtgta gatcagcgcg
     1141 ccgccgccgg cgagcatggt gaggatcagc aggatcaacg cgtggcgcga cgcccgcgtg
     1201 gactcattga gcgtggccgc gagcgaatcg gcttccctcg cgcgcagcac tgccagttcg
     1261 atatcgagcg actgctggtc ctcggcaagc cggcggaccg cttgctgggt ccagtcgcgg
     1321 gcggcgccag gcttgtctat agcggcgcgt tcgaacgccg attgagcgtc gcgtttcgcg
     1381 atgcgcgcgc tttcgccgag cagatagaac gcgccttgca tgtcgggttc gtaatcgaac
     1441 tgggcgcgca ggccgctttc cagcgcgttg atatgcgatg cacgcgcctc gcgaacgttg
     1501 ggcggcgtaa gcacgccgct tgtctcgtac cagctgattt ccgggaggat ttcgccgagc
     1561 gcgctgcggt acgcatcgag gtcgcgcatc aggctgagag agc
//
LOCUS       DATGBK010000019         1720 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_139032, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000019 DATGBK010000000
VERSION     DATGBK010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139032"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /locus_tag="VKJ77_00315"
     CDS             <1..544
                     /locus_tag="VKJ77_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008330369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43750.1"
                     /translation="ITWFFVTWFPIYLVKDRGFDILQAGFVASIPAAAGLIGGVASGF
                     VSDGLLKKTGSLSIARKGPVILGFLLSASMILCNYVNTQWLVVGLMSLAFFGKGFGAL
                     SWTILADTAPREIIGTTGGVFNALGNSAGIVTPVVIGYLLQSTGSFAAALVYVGAHGL
                     IAVLSYGLIVGKIQRYKLKD"
     gene            612..>1720
                     /locus_tag="VKJ77_00320"
     CDS             612..>1720
                     /locus_tag="VKJ77_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019450542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HMC43751.1"
                     /translation="MSTSSKSSLGKDPLAHLARGAASTDRITGVKVSLTYLPLAAPIS
                     DAKVLTGRQKPLTEIAFIFAEIRTEGGHEGIGFGYSKRAGGPGMYAHAKEIAPELIGE
                     DPNDIARIWNKLCWAGASMGRSGLTTQAIAPFDIALWDMKAKRAGLPLAKLLGAHRDS
                     VQCYNTSGGYLSMPLEQVIENIDASRERGIGGIKIKVGQPQTAIDLQRVTAVRKHLGD
                     SFPLMVDANQQWDRATAQRFGRVLEQFDLTWIEEPLDAYDVEGHAALTASLDTPIATG
                     EMLTSFGEHAQLITAQASDFIQPDAPRVGGITPFLQIMSLADFKGFSLAPHFAMEIHL
                     HLAAAYPREPWLEHFEWLEPMFNERLELRDGRMHVP"
BASE COUNT          331 a          499 c          544 g          346 t
ORIGIN      
        1 aattacctgg ttcttcgtca cgtggttccc gatctatctg gtcaaggatc gcggcttcga
       61 catcctgcaa gcgggcttcg tggcctctat tccggcggca gcgggattga tcggcggcgt
      121 ggctagcggc tttgtctccg acggcctgct gaaaaagacc ggctcactga gtattgcccg
      181 caaaggaccc gtaatcctcg gctttctgct tagcgcgagc atgattctct gcaactacgt
      241 gaacacgcaa tggctggtgg tcggcctgat gagcctcgca ttcttcggca aaggtttcgg
      301 cgcgctgagc tggaccattc tcgcggacac cgcacctcgg gaaatcatcg gtacgacggg
      361 tggcgtgttc aacgcgctcg gcaacagcgc gggcattgtc acgccggtgg tgattggtta
      421 cctgctgcaa agcacggggt cgttcgcggc cgcacttgtc tatgtcggcg cgcatgggtt
      481 gatcgcggtg ctgagctacg ggctgatcgt cgggaaaatc cagcgttata aattgaaaga
      541 ctaatcttca ggagacggga ccgcgaattc atgcgcccgt cagtcgcatc catttttcgt
      601 aaggagaagt cgtgagcaca tcgtctaaat catcgttggg caaagacccg cttgcccatc
      661 tggcgcgcgg ggcagccagc acggatcgca ttaccggtgt gaaggtctcg ctgacctacc
      721 tgccacttgc cgctcccatc agcgacgcca aggtgctgac cggtcggcaa aaaccgctga
      781 ccgagatcgc gtttatcttc gccgagatcc gcacggaagg cggtcatgaa ggcatcggtt
      841 tcggttattc gaaacgcgcc ggcggaccgg gcatgtacgc acatgcgaag gagatcgcgc
      901 ccgagttgat cggcgaagat ccgaacgaca ttgcgcgcat ctggaacaag ctctgctggg
      961 ccggtgcatc gatggggcgc agcggcctga cgacgcaagc cattgcgccg ttcgacatcg
     1021 cgctttggga catgaaggcg aaacgcgccg gcttgccgct cgcgaagctg cttggcgcgc
     1081 atcgcgattc ggtgcagtgc tacaacacct cgggaggtta tctgtcgatg ccgttggaac
     1141 aggtgatcga gaacatcgac gcgtcgcggg aacgcggcat tggcggtatc aagatcaagg
     1201 tcggccagcc acagacagcc atcgacctgc agcgggtgac ggcggtacgc aagcatctgg
     1261 gtgacagctt cccgctcatg gtcgatgcga accagcaatg ggaccgcgcc acggcgcagc
     1321 gctttgggcg cgtgctcgaa cagttcgatc tcacgtggat tgaagagccg ctggatgcct
     1381 acgatgtgga aggacacgcg gcgctcaccg catcgctcga tacgccgatt gcgactggcg
     1441 agatgctgac gagctttggc gaacatgcgc agttgatcac ggcgcaggcg tcggatttca
     1501 ttcagccgga cgcaccgcgc gtggggggta tcacgccgtt cctgcagatc atgagcctgg
     1561 ccgatttcaa gggcttcagc ctcgcgccgc acttcgcgat ggagattcac ttgcatctgg
     1621 ccgccgcgta tccgcgcgaa ccgtggcttg agcatttcga atggcttgag ccgatgttca
     1681 acgaacgtct cgagttgcgc gacggccgca tgcacgtgcc
//
LOCUS       DATGBK010000020         1597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_208255, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000020 DATGBK010000000
VERSION     DATGBK010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208255"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VKJ77_00325"
     CDS             complement(<1..329)
                     /locus_tag="VKJ77_00325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011793928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HMC43752.1"
                     /translation="MNRQLIPFIVENAPQIAKFRHDIHAHPELAFEEHRTAGIIADML
                     EGWDIEVQRNVGKTGLVGILRGRDGGASGKAIGLRADMDALAMPEQNEFAHASTTKMK
                     MHGCGHDG"
     gene            complement(366..>1597)
                     /locus_tag="VKJ77_00330"
     CDS             complement(366..>1597)
                     /locus_tag="VKJ77_00330"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43753.1"
                     /translation="VAATVAGNTLEIYDFVVYAFFSVYIGKAFFPTTDPSTSLLLSVG
                     VFGVGFIARPLGAYFIGRLADRAGRRLALLLTIFMITIGTMGLAFTPSYASIGIAAPL
                     IVVACRLIQGFALGGEVGPSTSFLVEIAPDNTRGWWGSWQLASQGLAIVIAGVAGLIT
                     THTLSAPQMQAWGWRIPLTLGVLMVPVAIYLRRSMPETLEEETHTTGGDASPTLGKHR
                     RTILLGILLILAPTVFTYLGTYMTTYAISVMKMDPATSMWATLAFGLSTFVFSLLGGW
                     LSDRHGRKPVMFWPRLAIALLCVPLFAMLQVYPNAFALIFATTVIAGLTALSGSASLV
                     AIPEMLPARIRAAGMSISYALTVSIFGGTTQFVATWLLKATGNALSPAWYVGALGIVS
                     ALAVLSVKETAPGHLPS"
BASE COUNT          344 a          490 c          475 g          288 t
ORIGIN      
        1 ccgtcgtgac cacagccgtg catcttcatc ttcgtggtgc tggcatgagc gaattcgttc
       61 tgctccggca tcgcaagcgc gtccatgtcc gcgcgcagac cgatcgcctt gccgctcgcg
      121 ccgccatcgc gcccgcgaag aatgccgacg aggccggtct tgccgacatt gcgctgcact
      181 tcgatatccc agccttcgag catgtctgca atgatcccag cggttcgatg ctcctcgaat
      241 gcgagctccg ggtgggcgtg gatatcgtgt cgaaacttcg caatctgcgg ggcgttctca
      301 acgatgaagg ggatgagttg acgattcatg attgcctttt gtcaggcctt gcgatggaac
      361 ggaaatcagg acgggagatg gcctggcgcg gtttccttga ctgacagcac agcgagcgcg
      421 ctgacaattc ccagtgcgcc gacgtaccac gccggcgaga gcgcgttccc cgttgccttg
      481 agaagccagg tcgcaacgaa ctgcgtcgtg ccgccgaaga tgcttacggt cagcgcatag
      541 gaaatcgaca tgcctgcagc gcgaatgcgt gccggcagca tttccggaat cgccaccagc
      601 gatgccgatc cgctcaacgc agtcaacccg gctatcaccg tggttgcgaa gatcaatgcg
      661 aacgcatttg gataaacctg cagcatcgcg aacagcggga cgcagagcag cgcgatcgca
      721 aggcgcggcc agaacatcac gggcttgcgg ccgtgccggt cgcttagcca accacccagc
      781 aacgagaaca cgaaggtcga gaggccgaat gcgagagtcg cccacatcga cgtggccggg
      841 tccatcttca tgaccgaaat cgcataggtc gtcatgtagg tgcccaggta ggtaaatacc
      901 gtgggcgcca ggatcagcag aatgccaagc aggatggtgc gacgatgctt gccaagcgtt
      961 ggcgatgcgt cgcctcccgt tgtgtgcgtc tcttcttcca gtgtctccgg catcgacctg
     1021 cgcaaataga tcgccacggg caccattaga acccctaacg tcaacggaat tcgccagccc
     1081 catgcctgca tctgcggcgc gcttagcgta tgagtcgtga tcagccctgc cacgcccgcg
     1141 atgacgatcg cgagaccctg actggcgagt tgccagctgc cccaccagcc gcgcgtgttg
     1201 tccggcgcaa tctcgacgag aaatgacgtc gacgggccga cctctccgcc tagcgcaaat
     1261 ccttgaatta atcggcaagc cacgacaata agcggcgctg caataccgat cgacgcatac
     1321 gacggcgtga aagcgagtcc catggtgccg atcgtgatca tgaaaatggt gagcagcagc
     1381 gcgagtcgtc ttcctgcccg gtcggccaac cggccaatga aatacgcgcc gagcggtctg
     1441 gcgataaatc ccacaccgaa cacgcctacg gatagcagca agctcgtgga cgggtctgtc
     1501 gtcgggaaaa acgctttgcc gatatagacg gaaaagaacg cgtagacaac gaagtcgtag
     1561 atctcgagcg tgtttcccgc gacggtggcg gcgacca
//
LOCUS       DATGBK010000021         3009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000021 DATGBK010000000
VERSION     DATGBK010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1579)
                     /gene="pheT"
                     /locus_tag="VKJ77_00335"
     CDS             complement(<1..1579)
                     /gene="pheT"
                     /locus_tag="VKJ77_00335"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010115709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HMC43754.1"
                     /translation="MQFPESWLRTFVDPKLSTDELSHALTMAGLEVESLAPVAPPTTK
                     IVVGQVLEVAKHPNADKLNVCQVDAGTGETLTIVCGAPNVSPGIKVPVALVGAELPPA
                     EAGGAPFAIKLSKLRGVESQGMLCSARELKLSEDHSGLLILPADTPIGQDIRQTLNLD
                     DTVFEIKLTPNKADCLSVFGVARETAAITGAPLHALDMPPAAVTINEILPVKVLAPDL
                     CGRFSGRVIRGVNAHAKTPHWMVERLERSGQRSISALVDISNYVMLELGRPTHVFDLD
                     KIHGGIEVRWGKSGETLKLLNGNTVELDETVGVIADDRHVESLAGIMGGDSTAVSLDT
                     TNIYLEAAFWWPDSICGRARKYNFSTDAAHRFERGVDYSTTVEHIERISRLILDICGG
                     NAGPVDDQTLNVPTREPVSMRVSRANRIIGVPIGADEIAQIFTRLGLTFTQEGDTFAV
                     TPPPYRFDIEIEEDLIEEVARIYGFEKIPARPPVAISEMRPTNETKRSIHVLRHAVAA
                     RDYAETVNFSFVDAEWEA"
     gene            complement(1676..2689)
                     /gene="pheS"
                     /locus_tag="VKJ77_00340"
     CDS             complement(1676..2689)
                     /gene="pheS"
                     /locus_tag="VKJ77_00340"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006753318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HMC43755.1"
                     /translation="MDLDQIVADARNAFENAADAATLENEKARFLGKSGVLTDLLKGL
                     GKLDPEARKTEGARINAVKQQVEAALNARRQALADVLLNQRLASESIDVTLPGRGLGA
                     GSLHPVMRTWERVEQIFSTIGFDVADGPEIETDWYNFTALNSPENHPARSMQDTFYID
                     GKDADGRQLLLRTHTSPMQVRYARMNKPPIKVIVPGRTYRVDSDATHSPMFNQVEGLW
                     IDENISFADLKGVYSDFLKKFFERDDILVRFRPSYFPFTEPSAEIDMMFEHGKNAGKW
                     LEISGSGQVHPNVIRNMGLDPERYIGFAFGSGLERLTMLRYGVQDLRLFFENDLRFLE
                     QFA"
     gene            complement(2890..>3009)
                     /locus_tag="VKJ77_00345"
     CDS             complement(2890..>3009)
                     /locus_tag="VKJ77_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004192938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HMC43756.1"
                     /translation="NGLKKASIELDRKVLADMAVFDKAAFAAIVKQVKAAVAA"
BASE COUNT          583 a          927 c          870 g          629 t
ORIGIN      
        1 ccgcttccca ttcggcatcg acgaaactga agttcaccgt ttccgcgtaa tcccgcgcag
       61 ctacggcgtg gcgcagcacg tggatcgaac gcttcgtctc gttggtcgga cgcatttcgc
      121 tgatcgcgac cggcggacgc gccggaatct tctcgaagcc ataaatgcgc gcgacttcct
      181 cgatcaggtc ctcttcaatt tcgatgtcga accgatacgg cggcggcgtg acggcaaacg
      241 tgtcgccctc ttgcgtgaac gtcaggccaa gtcgcgtgaa aatctgcgcg atttcatcag
      301 cgccaatagg cacgccgatg atccggttcg cgcgcgatac tcgcatgctc accggctcgc
      361 gtgtcggcac gttgagcgtc tggtcgtcga caggacctgc gttgccgccg caaatatcga
      421 ggatcagcct ggaaatgcgc tcgatatgct cgacggtcgt cgaataatcc acgccgcgct
      481 cgaagcgatg cgccgcgtcg gtggaaaagt tgtacttgcg cgcgcggcca caaatgctgt
      541 ccggccacca gaacgcggct tcaagataaa tgttggtcgt gtccagcgac acagcagtgc
      601 tatcgccgcc catgatcccg gcgaggcttt cgacatggcg gtcgtcggcg atcacaccga
      661 cggtttcatc gagttcgacc gtattgccat tcagcagctt cagcgtctcg cccgactttc
      721 cccagcgcac ttcaataccg ccgtggatct tgtcgagatc gaacacgtgc gtcggccggc
      781 cgagctcgag catcacgtaa ttcgagatat cgacgagtgc ggaaatgctg cgctgacccg
      841 agcgttcgag acgctcgacc atccagtgcg gcgtttttgc atgcgcgttc acaccgcgaa
      901 tcacgcggcc ggagaagcgt ccgcacagat ccggcgccag cactttgacc ggcaatattt
      961 cattgatcgt gacggcggcc gggggcatgt cgagcgcatg taacggtgcg cccgtgatcg
     1021 cggcggtttc ccgcgcgacg ccgaataccg acagacaatc ggccttgttc ggcgtgagct
     1081 tgatctcgaa aacggtgtcg tcgaggttga gcgtctggcg gatgtcctgg ccaatcgggg
     1141 tatcggcggg caggatcagc aagccgctgt gatcttccga cagcttcagt tcgcgtgccg
     1201 agcacaacat gccctggctt tccacgccgc gcagcttgga cagcttgatc gcgaacggcg
     1261 caccacccgc ttcggccggc ggcagttcgg cgccgaccag tgcgaccggc accttgattc
     1321 ccggcgacac attcggcgcg ccgcacacaa tggtcagcgt ctcgccggtg ccggcgtcga
     1381 cctgacaaac gttgagctta tcggcgttcg gatgcttcgc cacttccagc acctgcccga
     1441 cgacgatctt cgtggtcggc ggcgcgacgg gcgcgaggct ttccacttcg agacccgcca
     1501 tggtcagcgc gtgcgagagt tcatcggtcg agagcttggg gtcgacgaaa gttctaagcc
     1561 aggattccgg gaattgcatg tgtgtctagg ttcgaaatga ggttcgacat aagtcgtgtc
     1621 tgcgtctgga cctaaccgtc cggacaactg ctcgcaacaa cgtgcgcaac gtacgtcagg
     1681 caaattgctc gaggaaacgc agatcgtttt cgaagaacag gcgcaggtcc tgcacgccat
     1741 agcgcagcat cgtcaggcgc tcgaggccgc tgccgaatgc aaagccgata taccgttccg
     1801 ggtcgagtcc catgttgcgg atcacgttcg gatgaacttg ccccgaaccc gagatttcga
     1861 gccatttacc ggcgttcttg ccgtgctcga acatcatgtc gatttcggcg gacggctcgg
     1921 tgaatggaaa atacgacggc cggaagcgca cgagaatgtc gtcacgctcg aaaaatttct
     1981 tcaggaaatc agagtacacg cccttcaggt cggcaaagct gatgttctcg tcgatccaca
     2041 aaccttcgac ttgattgaac atcggcgaat gcgtggcgtc gctatccacc cgatacgtcc
     2101 ggcccggtac gatcaccttg atcggcggct tgttcatgcg cgcgtagcgc acctgcatcg
     2161 ggctggtgtg cgtgcgcagc agcagttgcc ggccatcggc atctttgcca tcgatataaa
     2221 acgtgtcctg catcgaacgc gccggatgat tttccgggct gttcagcgca gtgaagttgt
     2281 accagtcggt ttcgatctcg gggccgtcgg ccacatcgaa accaatcgtg ctgaaaatct
     2341 gttccacgcg ctcccacgtg cgcatcaccg gatgcaggct accggcgccg agaccgcggc
     2401 cgggcaacgt gacatcgatc gattccgacg caagccgttg attcagcaac acgtccgcca
     2461 gcgcctgacg gcgcgcgttc agtgccgctt ccacctgctg cttgaccgca ttgatgcgtg
     2521 cgccttcggt cttgcgggct tcaggatcga gtttgcccaa gcctttcagc agatccgtga
     2581 gcaccccgga tttaccaaga aagcgggcct tttcgttttc gagcgtagcc gcatcggcgg
     2641 cgttttcgaa ggcatttcgc gcgtcggcga caatctggtc cagatccatt gatcccatca
     2701 tttcagcgtc aaagttcttc tgatcgtttc cgggccgatg tttgcgcgac ctaggcatct
     2761 tcgcgcttca acccggcttc accaacaaaa acggggctcg acaagagccc cgttttcggt
     2821 tgttgcgccg tccggttaga gacaacgcta caactaacca cgcagtacca atcttgctaa
     2881 caagcttgat caggctgcaa cggcggcttt tacctgcttg acgatcgcag caaaagcagc
     2941 cttgtcgaac acagccatgt cggccagcac cttgcggtcg agttcgatcg acgccttctt
     3001 caggccgtt
//
LOCUS       DATGBK010000022         1705 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_231492, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000022 DATGBK010000000
VERSION     DATGBK010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231492"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1679)
                     /locus_tag="VKJ77_00350"
     CDS             complement(<1..1679)
                     /locus_tag="VKJ77_00350"
                     /inference="COORDINATES: protein motif:HMM:NF037959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HMC43757.1"
                     /translation="MARARVHPLFAQRRAPSPKAARQQPARKAVTKREPSSPQKPIER
                     RFGTHHKFYWIFAVSGFSGLIYESIWTHYLKLFLGHAAYAQSLVLAIFMGGMALGAWL
                     CGRLSQRWRNLLLGYAIVEGLIGFLALIFHPLFVSTVDLTLNQLIPSLGSSAEITAVK
                     WSIGAALILPQSVLLGMTFPLMSAGLIRRFPDRPGSRIATLYFANSIGGAIGVLASGF
                     WLIRLVGLPGTVGIAGGLNIVLAMTVAALARGPSEPVFQKVEHQDEKRDHAVPLALML
                     AVAGLTGLSSFMYEIGWIRMLSLVLGSSTHAFELMLSAFILGLALGGLWVRRRIDSIA
                     SPTVFLGWVQVVMGLCAVATLPLYNLSFDAMQALVSVLPKTEAGYTQFNLASHAIASV
                     IMLPAAVCAGMTLPLITYALIRSGIGERSIGLVYGANTVGAIVGVLFAVHIGMPLLGL
                     KNLIVTGAAVDIALGVLLLASCVKRVGMTQAAVAAAVAVLVLGVSLTLVSFDPYRMVS
                     GVFRGSSFHLMSADSTKVLFNRDGKTATISLLETADKVVQVRTNGKSDASI"
BASE COUNT          381 a          524 c          529 g          271 t
ORIGIN      
        1 ttgatggacg cgtccgactt gccgttggtg cggacctgaa ccaccttgtc ggccgtctcc
       61 agaagtgaaa tggtcgctgt cttgccatcg cgattgaaca gcaccttggt gctgtcggca
      121 ctcatcaggt ggaagctcga cccgcgaaac acgcccgaga ccatcctgta agggtcgaaa
      181 ctcaccaagg tgagcgacac gcccaagacc agcacggcga cggctgcggc cactgccgcc
      241 tgcgtcatcc cgacgcgctt cacacaactc gcgagcaaca gcacgcctag cgcgatatcc
      301 accgcggcac ccgtgacaat caggttcttc agaccgagca gcggcatgcc gatgtggacc
      361 gcgaacaaca caccgacgat cgcccccacg gtgttggcgc cataaaccag accgatgctg
      421 cgctcgccga tgccagacct gatcagcgca taggtgatca gtggcagcgt catgccggcg
      481 cacaccgccg caggcagcat gatcaccgag gcgatggcat ggctggcgag attgaactgg
      541 gtgtagcctg cctccgtctt gggcaacacc gacaccagcg cctgcatcgc atcgaagctc
      601 aagttgtaca gcggcaacgt ggccacggcg cacaagccca tgaccacctg cacccagccg
      661 agaaataccg tgggcgacgc aatggaatcg atgcgccggc gcacccacag gccgccgagc
      721 gcgagcccca gaatgaaggc ggagagcatc agctcgaagg catgagtgga actgccgagc
      781 accaggctca gcatgcggat ccaaccgatc tcgtacatga acgatgacaa gccggtgaga
      841 cccgcgactg ccagcatcaa cgcgagcggt acggcgtggt cgcgcttttc atcctggtgt
      901 tcgactttct gaaatacggg ttcgctcggt ccgcgtgcga gcgcggcgac cgtcatcgcc
      961 agcacgatat tgagaccgcc cgcaatccca acggtaccgg gcagtccgac aagccgtatc
     1021 agccagaatc cggatgcgag cacgccgatc gcgccgccga tgctgttggc gaaataaagc
     1081 gtggcgatgc ggctgccggg ccgatcggga aagcgccgga tcaatcccgc gctcatcaat
     1141 ggaaaggtca tgccgagcag caccgattgc ggcaggatca acgccgcgcc aatgctccat
     1201 tttacggccg tgatctctgc ggaagatccg agggaaggga tcaactggtt caatgtcaga
     1261 tcgaccgtcg aaacgaaaag cggatggaat atcagcgcca agaatccgat caagccttcg
     1321 acgatggcgt agccgagcag gagattgcgc cagcgctgcg acaagcgccc gcataaccat
     1381 gcccccagcg ccatgccacc catgaagatg gctagcacca ggctctgggc gtaggcggcg
     1441 tggccgagga agagcttgag atagtgggtc cagatcgatt cgtagatcag tccggaaaaa
     1501 ccggaaaccg cgaagatcca gtagaacttg tgatgggtgc cgaatctgcg ctcgatgggt
     1561 ttctgcggtg aggatggttc gcgcttcgtg accgccttgc gcgcgggttg ttggcgggca
     1621 gccttcgggg aaggcgcgcg gcgctgcgca aaaagtggat gtacgcgcgc gcgtgccata
     1681 gctcgaatga gtggagtccg atgag
//
LOCUS       DATGBK010000023         3183 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_277906, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000023 DATGBK010000000
VERSION     DATGBK010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3183
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277906"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VKJ77_00355"
     CDS             <1..244
                     /locus_tag="VKJ77_00355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HMC43758.1"
                     /translation="KEGKTEEVSEVEEGTPRKASAEILDLSELLKRSLKKGKPTRRGA
                     KGTSSTSSTEDDTADADAAEPAAKPARKTTTRRKRA"
     gene            326..3172
                     /gene="ligD"
                     /locus_tag="VKJ77_00360"
     CDS             326..3172
                     /gene="ligD"
                     /locus_tag="VKJ77_00360"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase D"
                     /protein_id="HMC43759.1"
                     /translation="MADKLETYQRMRRFNQTPEPSGQAADKAKARRASKKVQESALSF
                     VIQEHDARRLHYDFRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPIDYGSFEGNI
                     PEGNYGAGSVIVWDRGTWEPQAGSIDEARETYAKGKLKFVLHGDKLHGGWTLVRSNMR
                     GNGDKEQWLLIKERDDEARNEADYDVLLKQPGSVMSDSLGARTKNGEVRERTERKTAA
                     RASKTTSKTTKAAPPPKRPAVKDQGKSPERPRPDIVANRSGESLRTLGRNPAIQDAVR
                     AKLPATMKPQLATLVDIAPSNDDWSYEIKFDGYRILVRIDRQAASKTKSTRIFTRNGH
                     DWTSKFSRQIKALSQLDVDSAWLDGEAVVLDDNDLPSFQKLQNAFDANRPQDIAVYFF
                     DIPYLNGYDLRGVPLVQRRAILNALLEPVDDDALRFSADFEFSVDDLLKSACDMALEG
                     IIGKRRDSTYTPGRSSAWIKLKCRRRQEFVIGGYSEPSGSRGQFGALLLGVYDANGKL
                     QYAGRVGSGFDASTLRAVKKQLDAREVKTMPFASAPKERSRTPVHWVKPELVAECNFA
                     EWTSERIVRQASFVSLRDDKPAREIVKEVPKSTKEVALDDDNDEDKKPAKKTAAKSAA
                     KAVSAVKAATKKTSAKTAVKKNTRSPAGTELVAGVKISHPDRVIDPSTGTRKLDLALY
                     YESVAPWMLPHLKDRPVSLVRAPEDIGGELFFQKHSEKLTIPNVKQHPGIDPGHPALI
                     TIENVGALVGAAQMGTIEMHTWNALAAKLEKPDRMVFDLDPGEGLGWDRMQEAARLTR
                     ELLTELGLESFCKTRGGKGLHVVVPLTPQAGWDEVKGFSQAVAQHMASTLPKYFSAKM
                     GKQNRQDKIFVDYLRNNRGSSTVAAFSLRARPGMGASVPIGWDELDATTSGDQWNIGN
                     LHERLDALKTDPWSQYAKTRQRITASMKKRLDIK"
BASE COUNT          740 a          900 c         1024 g          519 t
ORIGIN      
        1 taaggaaggg aagacggagg aggtgtcgga ggtcgaagaa ggtacgccgc gcaaggcatc
       61 ggcggagatt ctcgacttgt cggaactgct gaagcgcagc ttgaagaaag ggaagccgac
      121 gaggcggggc gctaaaggca ccagcagcac cagcagcacc gaggacgaca cggctgacgc
      181 cgacgccgcg gaaccggcgg ccaaacccgc acgcaagaca acaacgcgcc gcaaacgcgc
      241 ttgaatccgt cgtcgcgcgt tgcgtcatac gttgtgtccc gcgttggttc acccatctac
      301 acgcactaca aaaagcgatc cgccgatggc cgataaactg gaaacctacc agcgcatgag
      361 gcgctttaac cagacgcctg agccatccgg ccaggcggct gataaggcca aggctcggcg
      421 tgcgtcgaaa aaggttcagg agagcgcact ttcgttcgtt atccaggagc acgatgcccg
      481 acgtcttcat tacgattttc gtctcgaact cgacggcacg ctgaagtcct gggccgtacc
      541 gaaagggccg agcctcgatc catcggtgaa acggctggcc gtgcatgtgg aagatcatcc
      601 gatcgattat ggctcgttcg aaggcaatat tcccgagggc aattacggcg cgggcagtgt
      661 gatcgtgtgg gatcgcggga cctgggagcc gcaggccggc agcatcgacg aagcccgtga
      721 gacgtacgcg aagggcaagc tcaagttcgt cctgcacggc gataagctgc acggcggctg
      781 gacgctcgtg cgcagcaaca tgcgtggcaa tggcgataaa gaacaatggc tgctgatcaa
      841 ggaacgcgac gacgaagctc gcaacgaggc cgactacgac gtgctgctca agcagcccgg
      901 cagcgtgatg agcgactcgc tcggagcacg tacgaagaac ggtgaagtac gcgaaaggac
      961 cgagcgaaag accgctgcca gggcgagcaa aacgaccagc aaaacgacga aggccgcacc
     1021 accgccgaag cggcctgccg tgaaggatca aggcaagagc cctgagcgcc cgcgaccgga
     1081 tatcgtggcg aaccgaagcg gggaatcgct gcggaccctt ggccgtaacc ccgcgatcca
     1141 ggacgctgtg cgcgcgaagc ttcctgcaac catgaagcca caactcgcga ctctcgtgga
     1201 catcgcgcca tcgaacgatg actggtctta tgaaatcaaa ttcgatggtt atcggattct
     1261 cgtgcgcatc gatcgccagg ctgcatcgaa aacgaaatcc acgcggatct tcacacgcaa
     1321 cggtcatgac tggaccagca agttcagccg ccagatcaag gcgctgagtc agctcgatgt
     1381 ggatagcgcg tggctcgacg gcgaggcggt cgtgctcgac gacaacgacc tacccagctt
     1441 tcagaaactg cagaacgctt tcgatgccaa tcgaccgcaa gatatcgccg tctatttctt
     1501 cgatatcccc tacctgaacg gttacgacct gcgcggcgtg ccgctggtac agcggcgagc
     1561 gatcctgaat gcgctgctgg aaccggtcga tgacgacgcg ctgcgtttct ccgcggattt
     1621 cgaattcagt gtggatgatc tgctgaagag cgcttgcgat atggcgctgg aggggattat
     1681 cggcaaacgg cgcgacagca cttatacgcc gggccgcagt agcgcatgga tcaagctcaa
     1741 atgccggcgc cggcaggagt ttgtgatcgg cggatattcg gagccatcgg gcagccgggg
     1801 gcagtttggc gcgttattgc tgggtgttta tgacgcgaac ggcaagctgc aatacgccgg
     1861 gcgtgtgggg agcggcttcg atgcgtcgac tctacgcgct gtcaaaaagc aactcgatgc
     1921 acgcgaggtc aagacaatgc cgttcgccag tgcaccgaaa gagcgtagcc ggacgccggt
     1981 gcattgggtc aagccggaac ttgttgccga atgcaatttc gctgaatgga cgtcggagcg
     2041 gatcgtgcga caagcgtcgt tcgtcagcct gagggacgac aagccggcgc gcgagatcgt
     2101 caaggaagtg ccgaaatcga cgaaggaggt tgcgttggac gatgacaacg atgaggacaa
     2161 aaagccggcg aagaaaacag cggccaagag cgcggcgaaa gcagttagcg cggtgaaagc
     2221 ggcgacgaaa aaaacctcgg cgaagaccgc cgttaaaaaa aacacgcgca gtcccgctgg
     2281 taccgagctt gtcgctggcg tgaagatcag tcatcccgat cgtgtgatcg atccctcgac
     2341 gggtactcgc aagctcgatc tcgccctcta ctacgagtcc gtcgcgccgt ggatgctgcc
     2401 gcatctcaaa gaccggccgg tgtcgctggt gcgtgcgccg gaggatatcg gcggggagct
     2461 gttctttcag aagcacagcg agaagctgac cattcctaac gtcaagcagc atccgggcat
     2521 cgatcctggt catccggcgc tcatcacgat agagaacgtc ggcgcgctgg tgggcgcggc
     2581 gcaaatgggc acgatcgaga tgcacacctg gaatgcgctc gcggccaaac ttgagaagcc
     2641 cgaccggatg gtcttcgatc ttgatccagg cgaaggcctc ggctgggacc ggatgcagga
     2701 ggccgcgcgc ctgacacgtg agttgctgac ggaactcggt cttgagtcgt tctgcaagac
     2761 gagaggcggc aagggcctgc atgtggtcgt tccgcttacg ccgcaggccg gctgggacga
     2821 agtgaaaggg ttctcacagg cggtcgcgca gcacatggcc agcacgttgc ccaagtattt
     2881 ctccgcgaag atgggcaagc agaatcgcca ggacaagatc ttcgtcgact acttgcgcaa
     2941 caaccggggg tcgagcacgg tcgccgcgtt ctcgctgcgc gcgcggccgg gcatgggggc
     3001 atcggttcct atcggctggg atgaactcga tgccacgacg agcggcgatc aatggaacat
     3061 cggcaatctg catgagcgcc tggacgcgct caaaactgat ccgtggagcc agtacgcgaa
     3121 aacacggcaa cgcatcaccg cgtccatgaa gaagcggctc gatatcaagt gaacggaggg
     3181 aaa
//
LOCUS       DATGBK010000024         2653 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_353, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000024 DATGBK010000000
VERSION     DATGBK010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2653
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..137
                     /locus_tag="VKJ77_00365"
     CDS             <1..137
                     /locus_tag="VKJ77_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Rid family hydrolase"
                     /protein_id="HMC43760.1"
                     /translation="FAAMNAAWDMWVPEGSAPPRATVEAKLANPACLVEVVVVAAVRS
                     "
     gene            171..2405
                     /locus_tag="VKJ77_00370"
     CDS             171..2405
                     /locus_tag="VKJ77_00370"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HMC43761.1"
                     /translation="MPDTAVAPAPIPEPSVDDALAFVREHARDARLTSGELLVEHAAG
                     TARIMQTLNVDPAAIVAAALFAIAPHIDDPERVISERFGAEVQGLVADVRKLWRLGSV
                     SSRATQATLPETGREAQAARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRYYAAN
                     KLEPSPDVPRETLEIYAPLANRLGIWQLKWELEDLAFRFEEPPTYKRIAKLLDEKRVE
                     REAYVTDAIARLQKELATANIRAEVSGRPKHIYSIWKKMRGKELDFSEVNDVRAFRVI
                     VDDIKDCYTVLGIVHNLWQPVPREFDDYISRPKANGYRSLHTVVVGDDGRAFEVQIRT
                     QEMHGFAEYGVAAHWRYKEAGARAYGGQVTASDRYDEKIAWLRQLLAWKEDVSESDQP
                     GAQPWQHLRDATLDDDHIYVLTPQARVIAMPQGSTAVDFAYHLHSELGHRCRGARVDG
                     AMVPLNTPLQNGQTVEIVAVKEGGPSRDWLNPLLGYLHSPRARQKVRAWFNAVDSEEN
                     IANGRALVEKTLQREGKTSVNLDQLASKLGFKTPEDLYAVVAKEEFSLRNVEQALHDT
                     PPPEPEPEAPAQFEKRSSGQSVAQGASTGVLVVGVDALLTQLARCCRPAPPDRIAGFV
                     TRGKGMSIHRSDCVTFQRMAERSPERVLETAWSADVMSGRGSSVYPVDLAVESNDRQG
                     LLRDISEVFAREKMNVTGVKTQSRRNVAYMQFTVEVSSAAQIQRACLLLSEVQGVVSA
                     SRRA"
     gene            2580..2653
                     /locus_tag="VKJ77_00375"
     tRNA            2580..2653
                     /locus_tag="VKJ77_00375"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2614..2616,aa:Val,seq:gac)
BASE COUNT          533 a          774 c          871 g          475 t
ORIGIN      
        1 atttcgccgc catgaacgca gcgtgggaca tgtgggtgcc ggaaggcagt gcgccgccgc
       61 gcgcgaccgt ggaagcgaag cttgccaatc cggcatgcct ggtggaagtg gtggtcgtgg
      121 ctgccgtgcg cagctaagcc gggaacattg cgagcaccag attaatccgt atgcctgata
      181 ccgccgtcgc ccccgcgcca atacccgagc cgtcggtcga cgacgcgctc gcgttcgtgc
      241 gcgaacacgc gagagatgcg cggttgacca gcggggaatt gctggtcgag cacgctgccg
      301 gcacggcgcg gatcatgcaa acgctgaacg tcgatcctgc agccatcgtg gcggcggcgc
      361 tgtttgcaat tgcgccgcac attgacgacc ccgagcgtgt catcagtgaa cgttttggcg
      421 cggaagtgca aggccttgtc gcggatgtcc gcaagctgtg gcggctgggt tcggtcagtt
      481 cgcgggccac tcaggcaacg ttgccggaaa cgggccgtga agcgcaagcg gcgcgccgtg
      541 cccaagtcga agcgctgcgc aaaatgctgc tcgcgttcgc gcaggatatt cgcgtggtgt
      601 tgatccggct ggcgtcgcgg ctgcagtcgt tgcgctatta cgcggcgaac aagcttgaac
      661 cttcgcccga cgtgccgcgt gaaacgctcg aaatctacgc accgctcgcg aaccggctgg
      721 gcatctggca attgaagtgg gaactggagg acctcgcgtt tcgcttcgag gaaccgccca
      781 cctacaagcg catcgccaag ttgctcgacg aaaagcgtgt cgagcgcgaa gcgtatgtga
      841 ccgacgctat cgcacgcttg cagaaggaac tggccaccgc gaatatccgg gcggaagtga
      901 gcggccggcc gaagcacatc tacagcatct ggaaaaagat gcgcggcaag gaactggatt
      961 tttccgaggt gaatgacgtg cgcgcgtttc gcgtgatcgt cgacgacatc aaggattgct
     1021 acaccgtgct tggtatcgtc cataacttgt ggcagccggt gccacgggag ttcgacgact
     1081 acatttcacg gccgaaagcg aacgggtacc ggtcgctgca taccgtcgtg gtaggcgatg
     1141 acgggcgagc gtttgaagtc cagatccgca cgcaggagat gcacggcttc gccgaatacg
     1201 gcgtagcagc ccactggcgc tacaaggaag ccggcgctcg cgcgtacggc ggccaggtga
     1261 cggccagcga cagatacgac gaaaagatcg cgtggttgcg ccaactgctc gcgtggaaag
     1321 aagacgtctc cgagagcgat cagccgggcg cgcagccttg gcagcatttg cgcgatgcca
     1381 cgctcgacga cgaccacatc tatgtgctca cgccgcaggc gcgcgtgatc gccatgccgc
     1441 aaggctcgac cgctgtcgac ttcgcttatc acctacacag cgagcttggg catcgttgcc
     1501 gcggcgcgcg tgtcgacggg gccatggtgc cgctcaacac gccgctgcag aacggccaga
     1561 cggtcgagat cgtggcggtg aaggagggtg ggccgtcacg cgactggctc aatccgttgc
     1621 tcggctattt gcacagcccg cgcgctcggc aaaaggtgcg cgcgtggttc aacgcggtcg
     1681 attccgaaga aaacattgcg aacgggcgcg cgctcgttga aaagacgctg cagcgtgagg
     1741 gcaagacgtc cgtcaacctc gatcagctgg catcgaaact cggcttcaag acgcctgaag
     1801 atctgtacgc cgtcgtcgcc aaggaagagt tcagtctgcg caacgtcgag caagcgctgc
     1861 acgatacacc gccgcccgaa cccgaacccg aagcgcccgc gcagttcgag aagcgcagca
     1921 gcgggcaaag cgtggcgcaa ggtgcgtcta ccggcgtgct ggtcgtcggc gtggacgcgt
     1981 tgctgacgca actggcgcgg tgttgccgtc cggctccgcc ggatcgcatc gcgggctttg
     2041 tcacgcgcgg caagggcatg tcgatccacc gcagtgactg cgtgaccttc cagcggatgg
     2101 ccgagcgttc acccgaacgc gtgcttgaga ccgcgtggtc cgccgacgta atgagcggac
     2161 gcggatcgtc ggtgtatccg gtcgatctcg cggtggagtc gaacgatcgg caaggcttgc
     2221 tgcgcgatat ctccgaagtc ttcgcgcgcg agaaaatgaa cgtgaccggc gtgaagacgc
     2281 agagccggcg caacgtcgcg tacatgcaat ttactgtcga ggtgtcgagt gccgcgcaaa
     2341 ttcagcgcgc gtgcttgttg ctgagcgaag tgcagggcgt ggtgagcgcg tcgcgacggg
     2401 cctgaagccg tacgcaagaa gaaaaagtgc atgccggctc ttgcgctcaa tgcattgata
     2461 acgcgttgaa tttgaagcgc attgtcgatg cttattaaac gtatcgacga atatatgcag
     2521 tgtcatcgca tgaaagcact tgccaagatt caaaacgctc catataattt cgcttcttca
     2581 ggctcgtagc tcagctggtt agagcaccac cttgacatgg tgggggtcgt tggttcgagt
     2641 ccaatcgagc cta
//
LOCUS       DATGBK010000025         1888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_139172, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000025 DATGBK010000000
VERSION     DATGBK010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139172"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..725
                     /locus_tag="VKJ77_00380"
     CDS             <1..725
                     /locus_tag="VKJ77_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC43762.1"
                     /translation="AHVPLALALMITLVASMVVTGALGLAIERVAYQPLLRAPRLSIL
                     ITALGVSLALENGVLLLYGAGFNTYPHVLSHAGFDVQGVQITYAQIGIIVASFALMLA
                     LYFFVHRTFVGTAMRALAIDQDAARLMGIDVERLIQLTFFLGSALAAVAGVMEGLYYT
                     QINFFMGFVLGLRAFTAAVLGGIGNIPGAMAGGILIGLLEAFGAGYVSSRWTDVFVFG
                     VLIAVLVIKPTGLFGERVVERM"
     gene            794..>1888
                     /locus_tag="VKJ77_00385"
     CDS             794..>1888
                     /locus_tag="VKJ77_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007590327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC43763.1"
                     /translation="MALPAVASNYVVDVGLTIATYSILGLGLNIVVGYAGLLDLGYAA
                     FFAIGAYTTALLETLLHFSFWETLPFSLAFAGASGIVIGYPTLRLRSDYLAIVTLGFG
                     EITRIVATNLRITGGPNGIYGIVSPSLFGYEISSPRAVYELGIAFFVLVLVFAIRLGQ
                     SRLGRAWTSIREDEDAAEAVGVPTLRVNLLAYVMGALIGGFGGSLFAARFGTIDPTGF
                     TYLQSVTILIVVVLGGLGSIPGVILGAVIVAGLPEMLRFLNLWRIFAFAIGLVILMLL
                     RPQGLWPAPLRRVAPPRKDAGGATTPLPRETTTGEVLLEVSNMQRRFGGVQAVGGVSF
                     TVRSGEIVSLIGPNGAGKTTVFNCLTGVIRT"
BASE COUNT          270 a          590 c          602 g          426 t
ORIGIN      
        1 cagcgcacgt gcccctcgct ttggcgctga tgattacctt ggtggcttcg atggtggtca
       61 caggggcact tggcctcgcg atcgagcggg ttgcgtacca gccactgttg cgcgcaccgc
      121 ggctgtcgat tctgataact gcactcggcg tctccctggc gctggaaaat ggcgtgctgc
      181 tactctacgg ggccggtttc aacacttatc ctcatgtgct cagccacgca ggattcgatg
      241 tccaaggcgt gcagatcacg tacgcacaga tcggcatcat cgtggccagc ttcgcgctga
      301 tgctcgcgtt gtatttcttc gttcaccgta cgttcgtcgg caccgcgatg cgcgcgctgg
      361 caatcgatca agacgcggca cgcctgatgg gcatcgatgt cgagcggctg atccagctga
      421 ccttcttcct gggttcggcg ctggccgcgg tggcgggggt catggaaggg ctctactaca
      481 cgcagatcaa tttcttcatg ggcttcgtgc ttggcctgcg cgccttcacc gctgcggttc
      541 tcggcggcat tggcaacatt ccgggagcaa tggccggcgg catcctgatc ggcctgctcg
      601 aggcgttcgg cgccggttat gtctcgtcac ggtggaccga tgtattcgtg ttcggcgtgc
      661 tgatcgccgt gctcgtgatc aagccgaccg ggttgttcgg cgaacgcgtt gtcgagagaa
      721 tgtagccatg agcgcactgc aggcgtcatc gcgttggtcc cgccctgccg gcgtcgcgct
      781 tctagcggcc gcagtggcgc tgccggctgt tgccagcaac tatgtcgtcg atgtaggcct
      841 gaccatcgcg acctattcga tcctgggtct cgggctgaac atcgttgtag gttatgcagg
      901 gctgctggac ctgggctatg ccgccttctt tgccatcggc gcctacacga cggcgctgct
      961 ggaaacccta ttgcacttct cgttctggga gacgctgccg ttcagcctcg cgtttgccgg
     1021 tgcttcgggt atcgtcattg gttaccctac cctgcgcctg cgaagcgact acctggcgat
     1081 tgtgacgctt gggttcggtg agatcacgcg catcgttgcc accaacctcc gcatcacggg
     1141 cggcccgaac ggcatctacg gcatcgttag cccaagcctg ttcggttacg agatcagctc
     1201 gccgcgtgcg gtctacgaac tgggcatcgc gttcttcgtg ctcgtgctcg tgttcgcgat
     1261 ccggcttggc cagtcgcggc tcggtcgcgc ctggaccagc atccgcgagg acgaggacgc
     1321 ggccgaagcc gtaggcgtgc caacgctacg agtcaatctc ctcgcctacg tcatgggcgc
     1381 gttgatcggc ggtttcggag gcagcctgtt cgcggcgcgc ttcgggacca tcgacccgac
     1441 cggcttcacc tatctgcagt ccgtcacgat cctgatcgtg gtcgtgcttg gcggcctggg
     1501 cagcattcct ggcgtgatcc tgggtgctgt cattgttgcc ggcctgcccg agatgctgcg
     1561 tttcctcaac ctttggcgca tcttcgcttt tgcgatcggg cttgtgatcc tgatgctgct
     1621 gcggccacaa gggctgtggc cggcgccgct gcgccgcgtg gcgcccccgc gcaaggatgc
     1681 cggcggcgcg acaacgcctt tgccccggga gaccaccacc ggtgaagtcc tgctcgaggt
     1741 gagcaacatg caacgccgct tcggcggtgt gcaggcggtc ggtggtgtca gtttcaccgt
     1801 acgtagcggt gaaattgtca gcctgatcgg cccgaatggc gccggcaaga caacggtatt
     1861 caactgcctc accggtgtga tccgcacg
//
LOCUS       DATGBK010000026         3551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92907, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000026 DATGBK010000000
VERSION     DATGBK010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3551
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92907"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1307
                     /locus_tag="VKJ77_00390"
     CDS             <1..1307
                     /locus_tag="VKJ77_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HMC43764.1"
                     /translation="ASRGGRDGSATLGQGPLAGVPYLIKDLGAPVAGLRMSMGCRHFQ
                     HFTPTEDSPIVARSKQAGLNIFGKTNTPEIGQMPYTEPELFGPARNPWGLDYTTGGSS
                     GGAAAAVAGGVVPLAHAADGGGSIRIPASCCGLFGYKPSNEVQPQPLPAPGDLAVDHA
                     VSRSVRDSALLLDLTSSGQSGAFFRAVGEPCGPLRIGYMEEPQLAEALSADVKAALDD
                     AARLAESLGHRVEPASFGLDFGALAHAFLVMWSVLAQEIVLHADRISGQKPKRADFEI
                     ASWAMAHIGRKIGESDLPAALETQRQFKAKMATLMTRYDVLLTPTLAAAPFKIGAKQP
                     SQFERFQMHVLSAVPIEPLLRRMLSVSSKKAFDWAGCTELFNFTGQPAMSVPLYWNAR
                     GMPIGVQFAGRINDDATLFRLAAQLEAARPWFGRRPALMTAR"
     gene            complement(1343..2455)
                     /locus_tag="VKJ77_00395"
     CDS             complement(1343..2455)
                     /locus_tag="VKJ77_00395"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011880043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HMC43765.1"
                     /translation="MSDLPSRAVMSQPQEKEVPTENWLIDWCERGRLPDSFVRLGMRH
                     LMKQRLRDEGIGDGEARSKRFNRLIDELRVSPIAIETQAANTQHYEVPAAFFHGHLGE
                     HLKYSCCLYRTGKETLDQAERAMLEEYAVRAQLTDGQRILDLGCGWGSLSLWLAETYP
                     RSQIVALSNSRGQREFIESEAAERGITNLSVVTGNIVDHQFDPALLGDGFDRVLSIEM
                     FEHMKNYRLLLNKISGWMREDGKLFVHVFAHRTLAYHFEVNDGSDWMSKYFFTGGTMP
                     SEALLLHFQDDLTIDRQWWVSGAHYEKTANHWLANLDAARSELMPLMVQTYGAANAGI
                     WFQRWRMFYMAVAELFGYAGGNEWGVAHYRFSKRSG"
     gene            complement(2480..3262)
                     /locus_tag="VKJ77_00400"
     CDS             complement(2480..3262)
                     /locus_tag="VKJ77_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009239821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HMC43766.1"
                     /translation="MPPLTVAVIAFIALIVVFTAIWAWQIKSKNAGMVDPIWAMSLGV
                     IAVLVAVLAEGDLHTRVVVGIGGFVWGIRLGLHLWKRNAGHAEDPRYHKFREQWGADA
                     NKKMFWFFQMQVVISMLLSLAFFVPAYRATPPGAAWVALAAVIWVISIAGEALADHQL
                     RVFKADPSNHGNVCRAGLWRYSRHPNYFFECVHWVAYIPLAIGVGVWIFAMLLPPVLM
                     AWLLMKVSGVPMIEAESAKKRAGYADYMRTTSALIPWPPRHP"
BASE COUNT          725 a         1110 c         1041 g          675 t
ORIGIN      
        1 gcgcgagccg tggcggacgc gacggctccg ccaccctggg ccaaggtccg ctcgcgggtg
       61 ttccctacct catcaaggac ctgggtgcgc cagtcgcggg tttgcgcatg tcgatgggct
      121 gccgccattt ccagcatttc acgccgaccg aagactcgcc gatcgttgcg cgctcgaagc
      181 aggccggcct caacattttc ggtaagacca acacgcctga aatcggccag atgccgtaca
      241 ccgaacccga gttgttcggc ccggcgcgta acccgtgggg actcgactac accacgggcg
      301 gttccagcgg aggcgcagcg gcggcggtcg cgggcggcgt cgtcccgctc gcgcacgcgg
      361 cggatggcgg cgggtcgatc cgcatcccgg cgtcgtgttg cgggctcttc ggctacaagc
      421 catcgaacga agtccagccg caaccgctgc ccgcacccgg cgatttagcg gtggatcatg
      481 cagtgtcgcg cagtgtccgc gacagcgccc tgttactcga tctcacatcg tccgggcaat
      541 cgggcgcttt cttccgggcc gtcggcgagc cgtgcgggcc gttgcgcatc ggctatatgg
      601 aagagccgca gctcgcggag gcgttgtcgg cggacgtaaa agccgctctc gacgacgccg
      661 ccaggctcgc tgaatcacta ggtcatcgtg tagagccggc gtcgttcggg ctcgacttcg
      721 gcgccctcgc tcatgcgttc ctggtgatgt ggtcagtgct ggcccaagag attgtgctgc
      781 acgccgaccg catcagcggc cagaagccga agcgcgctga tttcgaaatt gcatcgtggg
      841 caatggcgca tataggccgg aagattggcg aaagcgatct gccggcggcg ctggaaactc
      901 agcgtcagtt caaggcgaag atggctacgc tgatgacacg atatgacgtg ttgctgacgc
      961 ctacgcttgc cgccgcgccg ttcaagatcg gcgccaagca gccatcgcaa ttcgagcgtt
     1021 tccagatgca cgttctatcg gccgttccta ttgagccatt attgcggcga atgctgtcgg
     1081 tatcgtcgaa gaaggcgttt gactgggccg gttgcacgga gcttttcaac tttaccggtc
     1141 agccggcgat gtccgtgccc ctctactgga acgcccgcgg tatgccgatc ggcgtgcagt
     1201 tcgcggggcg gattaacgac gatgccacgt tgttccggct ggcggcgcag ctagaggccg
     1261 cgaggccgtg gttcggccgc cgcccggcgt tgatgacagc gaggtgaagg gcttgggttt
     1321 gcccaaccca agcgatgaaa acctagcctg agcgcttgga aaagcggtaa tgcgcgacgc
     1381 cccattcgtt gccgccggcg tacccgaaca actcggccac cgccatgtaa aacatgcgcc
     1441 atcgctgaaa ccagataccg gcgttagccg cgccgtacgt ctggaccatc agcggcatca
     1501 actcgctgcg cgccgcgtcc agattcgcca gccagtgatt cgccgtcttt tcataatgcg
     1561 cgccgctcac ccaccattga cggtcaatgg tgagatcgtc ctggaaatgc agcagcagcg
     1621 cctccgacgg catggtcccg cccgtaaaaa agtacttcga catccagtcg ctgccgtcat
     1681 tcacttcgaa gtggtaagcc agcgtgcgat gcgcgaacac atgcacaaaa agcttgccgt
     1741 cctcgcgcat ccagccagag atcttgttca gcaacaatcg atagttcttc atgtgctcga
     1801 acatctctat cgacaacact cggtcgaacc catctccgag caatgccgga tcgaactgat
     1861 gatcgacgat attccccgtc accacgctca ggtttgttat gccgcgctcg gccgcctcgc
     1921 tctcgataaa ctcgcgctgc ccccgcgaat tcgataacgc cacaatctgc gagcgcggat
     1981 aagtttccgc cagccacaac gagagcgaac cccagccgca accgagatcg aggatgcgct
     2041 ggccgtcggt gagttgcgcg cggacggcat actcctcgag catcgcgcgc tcggcctgat
     2101 caagcgtttc cttccccgtc cgatacaagc agcacgagta cttcaggtgc tcgcccaaat
     2161 ggccatggaa aaacgccgcc ggtacctcgt agtgctgcgt gttcgcggct tgcgtttcga
     2221 tcgcaatggg gcttacgcgc agttcatcga tcaggcgatt aaagcgcttc gaacgcgctt
     2281 cgccgtcgcc gataccttca tcgcgcagac gctgtttcat caggtggcgc atcccgaggc
     2341 gcacgaacga gtccggaagc cggccgcgct cgcaccagtc gatcagccag ttctccgtcg
     2401 gcacttcttt ttcttgtggt tgtgacataa ccgctcgcga tggcaggtcg ctcatgtgga
     2461 aactcctcgc tattattatt taaggatgac gcggcggcca tggaatcaat gcactggttg
     2521 tacgcatgta atcggcatat cccgcgcgct ttttagccga ttccgcttca atcatgggta
     2581 cgcccgagac tttcatcagc agccatgcca tcagcacggg cggcaacagc atggcgaaaa
     2641 tccacacgcc aacgccgatt gcgagcggga tgtacgcgac ccaatgcacg cactcgaaga
     2701 agtagttggg gtgtcgtgaa tagcgccaca agcccgcgcg gcatacattg ccgtgattcg
     2761 acgggtccgc tttgaacacg cgcaattgat ggtcggcgag cgcttcgccc gcaatcgaga
     2821 tcacccagat caccgccgcc agcgcgaccc aggcagcgcc gggcggcgtt gcgcgatagg
     2881 ccggcacgaa aaacgcgagc gacagcagca tcgaaatcac gacttgcatc tggaagaacc
     2941 agaacatttt cttgttcgcg tcggcacccc attgctcgcg gaacttgtga taccgcggat
     3001 cttcggcgtg accggcattg cgcttccaca gatgcagacc aagccgaatg ccccagacga
     3061 acccgccaat tccaacgaca acccgcgtgt gcagatcgcc ctcggcgagt actgcaacca
     3121 gcaccgcgat cacgccgagc gacatggccc agatgggatc gaccatcccg gcgttcttcg
     3181 atttaatttg ccacgcccaa attgccgtga aaacaacgat gagcgcgata aaagcgataa
     3241 ctgcaacggt gagcggcggc atgaggtcct cgatgtcgat tttttgttcg ttagatatca
     3301 atggcatcga ctggagagcg attgcaacta cgacttggag taattacgca cgttgtccgc
     3361 cggcggatgc gccgacgcga ggtagccgag cagaagtgga agcaaagcaa gcgtcgacgt
     3421 tcagaacgaa cgcgagcaca agatattccc gacgataaac gggaacgcag gaacggtgcg
     3481 tctttaaacg ccctgttccc gattaccagg cgtggaagtg aaagccaaag cctcgacttt
     3541 acttgccgcg c
//
LOCUS       DATGBK010000027         1524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92929, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000027 DATGBK010000000
VERSION     DATGBK010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92929"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..783)
                     /gene="mpl"
                     /locus_tag="VKJ77_00405"
     CDS             complement(<1..783)
                     /gene="mpl"
                     /locus_tag="VKJ77_00405"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011655924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HMC43767.1"
                     /translation="MHIHILGICGTFMGGLAVLAREAGHRVTGCDAGVYPPMSTQLEA
                     QGIELIEGYGVEQIALEPDLFVIGNVVTRGNPLMEAILDRGLPYTSGPQWLGEHVLNG
                     KWVLAVAGTHGKTTTSSMLTWLLEDAGMNPGFLIGGVPLNFGISARLTDSSFFVIEAD
                     EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIV
                     TNGREAALERVLTRGCWTGVERFGVQGGWEALPAIDGVAVDEQ"
     gene            955..>1524
                     /locus_tag="VKJ77_00410"
     CDS             955..>1524
                     /locus_tag="VKJ77_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--alanine ligase"
                     /protein_id="HMC43768.1"
                     /translation="MIRKSHFDPLRVREEIAIAAARLIAEDGLDYSTAKRKAARQVVG
                     ETRIGGEWLPDNGQIEDEIREYQAIFQSESQPAVLRRMREVAFEWMQRLQPFNPYLTG
                     AVLNGTAGEHSDIHLQCFCDNPKEVAIYLLNANVQYDVSETRHFAGRGYVETLSFLMR
                     PSRDEEPMGIHVALYDTNDLRGAVRADGRG"
BASE COUNT          319 a          477 c          461 g          267 t
ORIGIN      
        1 ctgctcgtcg acggcaacac cgtcgatcgc gggcagcgct tcccagccgc cttgcacgcc
       61 gaagcgctcg acgcccgtcc agcaaccgcg tgtcagcacg cgttcgagcg cggcttcgcg
      121 gccgttcgtc acgattcgtc cgacgccggg cacggtgcgc accagatgat gaaattgggt
      181 ctcgatagca gcgagatccg gaaagatatc ggcgtgatcg aattcgagat tattcagcac
      241 cgccgtgcgt gggcgatagt ggacgaactt ggagcgttta tcgaagaaag cggtgtcgta
      301 ttcatcggct tcgatcacga agaagcttga atccgtcagc cgtgccgaga tgccgaaatt
      361 cagcggcacg ccgccgatca ggaagcccgg attcatgccg gcatcttcca atagccaggt
      421 cagcatggag ctggtggtgg tcttgccgtg cgtgccggcg accgcgagca cccattttcc
      481 gttgagcacg tgctcaccga gccattgcgg gccggacgtg tacggcaggc cgcgatcgag
      541 gatggcctcc atcagcggat tgccgcgcgt cacgacattc cctattacga acaaatcggg
      601 ttcaagcgca atttgctcca cgccataacc ttcgatcaac tcgatgccct gcgcttcgag
      661 ctgggtgctc atcggcggat agacgccggc gtcgcaaccc gtgacgcggt gacccgcttc
      721 ccgggcgagg accgcgaggc cacccatgaa tgtgccgcag ataccgagga tgtgaatgtg
      781 cataaagcgt gtgttcgtgg cgggagggcc gttagcacgg ggggaatgag tgaggtattc
      841 cggcgcccgg agcggtacat tgtaaccgac ggatgggcgg ggattttggc cgactggccg
      901 gactgacccc acccccgacc gcgaacgaaa acctatctcc ggtatcattc cgccatgatt
      961 cgcaaatcac atttcgatcc gctgcgcgtg cgcgaagaaa tcgccatcgc ggcagcgcgg
     1021 ctgatcgccg aagacggcct tgactattcc accgcgaagc gcaaagccgc ccgccaggtc
     1081 gtcggtgaaa cacgcattgg cggcgaatgg ctaccggata acggtcagat cgaagacgaa
     1141 atccgcgaat accaggccat cttccaaagc gaaagccagc cagccgtcct gcgacgcatg
     1201 cgcgaagtcg cattcgaatg gatgcaacgg ctccagccct tcaacccgta cctgacgggc
     1261 gccgtgctaa acggcacagc aggcgagcac tcggatatcc acctgcaatg cttctgcgat
     1321 aacccaaagg aagtcgcgat ctacctgctg aacgcgaacg ttcaatacga cgtatcggaa
     1381 acccggcatt ttgccggccg cggttatgtc gaaaccctga gcttcctgat gcgcccctcg
     1441 cgcgacgaag aacccatggg tattcacgtc gcgctctacg acaccaacga cctgcgcggc
     1501 gccgtgcgcg cggacggccg gggc
//
LOCUS       DATGBK010000028         1901 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_185437, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000028 DATGBK010000000
VERSION     DATGBK010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185437"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..826
                     /locus_tag="VKJ77_00415"
     CDS             <1..826
                     /locus_tag="VKJ77_00415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012425984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HMC43769.1"
                     /translation="YAKARRAREAARLMPTPSGHHVREAHALLAESTGDLTEHAAQAL
                     LAHYGIDTPKGALACNRDEARSIAGSIGFPLVIKVQSPDIPHKTEAGAVRVGIRDEAM
                     LADAFDEIIANARRHVPGARIDGVLVQEEIRDAVEMIVGIENDPSFGPAVMCGLGGIY
                     AEVLKDVAWRLAPVSRADAHAMIRELRAYAILNGARGKPPGDIDALVDAIVAMSAMAL
                     DLAPGLKEFDINPLFVLPAGKGVRAGDALARCLPRPAAAVDEAQESAHCAQAVVDG"
     gene            832..>1901
                     /locus_tag="VKJ77_00420"
     CDS             832..>1901
                     /locus_tag="VKJ77_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43770.1"
                     /translation="MSLPGRFETRRRQHAATLTSVGILRETLMQSHPQSGATTSGDTT
                     PDEVDRTYRKVFFRLIPLLFLCYVISYIDRVNISFAKLQFMHDLGFSESTYGLGAGLF
                     FIGYVLFEVPSNLWMQRVGARRTLLRIMFAWGLASSLMMFVRTPTQFYAMRFLLGVTE
                     AGFFPGIIFYLSCWFPGARRARVTAFLMMATAVAGIVGGPMSGFIMTRLAGVGGLPGW
                     QWLFLLEGVPAVTLGIFAFFYLGDSPAEVRWLSDREKALISRELLADEQSKHSGHLDG
                     LRGALANPRVYLAAIVYFAVMMPFNAIGFWAPTIIRDLGVANVLDVGLLSALVFIAAA
                     IGTYVVGASSDRMMERRWHVAG"
BASE COUNT          307 a          582 c          615 g          397 t
ORIGIN      
        1 ctacgccaag gcacgccgcg ctcgggaggc agcacgactc atgccgacgc cttcaggtca
       61 tcacgtcaga gaagcgcacg cgctgcttgc cgagagtacg ggcgacctga cggagcacgc
      121 ggcgcaggcg ctcctcgcgc actatggcat cgatacaccc aagggcgcgc tggcatgcaa
      181 tcgcgatgaa gcgcgatcga ttgcggggtc gatcggcttt ccgctggtca tcaaagtcca
      241 gtcgcccgat atcccgcaca agactgaagc gggcgcagtg cgcgtcggca ttcgcgatga
      301 ggcgatgctc gcggacgcgt tcgatgaaat catcgcgaac gcacgacgtc acgttcccgg
      361 cgcgcgaatc gacggcgtcc tcgtacagga agagattcgc gatgcggtgg agatgatcgt
      421 cggcatcgag aatgatccgt cgttcggccc cgctgtgatg tgcggactcg gcggtatcta
      481 cgccgaggtg ctgaaggacg tggcgtggcg cctcgcccct gtctcgcgtg ccgacgcgca
      541 cgcgatgatc cgcgaactgc gtgcgtacgc aatcctcaac ggcgcgcgtg gcaagccacc
      601 gggcgatatc gatgcgctgg tggacgcgat tgttgcaatg tccgcgatgg cactcgacct
      661 cgcgccgggc ctgaaggagt tcgacatcaa tccactgttc gttttgccag cgggcaaggg
      721 tgtgcgcgca ggcgacgcgc ttgcccgctg cctgccgcga cccgctgcgg ccgtcgacga
      781 ggcacaggaa agcgcgcatt gtgctcaggc tgttgtcgac ggatagtgtc catgagcttg
      841 cccggccgct ttgaaacccg gcgtcgacag cacgccgcga cgctcacttc agttggcatt
      901 cttcgcgaga ccctcatgca aagccatccg caatccggcg caacgacctc gggcgacact
      961 acgcccgatg aagtcgaccg cacctatcgc aaggtatttt ttcggctgat tccgctgctg
     1021 ttcctctgct acgtgatcag ctatatcgac cgtgtgaaca tcagcttcgc caagctgcag
     1081 ttcatgcacg atctcgggtt ttcagagtcg acgtacggct tgggagccgg tctgttcttt
     1141 atcggctacg tgctttttga agtgccgagc aatctctgga tgcaacgcgt cggcgcgcgc
     1201 cgcacgctct tgcgcatcat gttcgcgtgg ggacttgcat cgagcctgat gatgttcgtt
     1261 cgcacaccga cgcagttcta tgccatgcgc tttctgctgg gtgtcaccga agcgggcttt
     1321 ttcccgggga tcatcttcta tctgagctgc tggtttccgg gcgcccggcg cgcacgcgtg
     1381 accgcattcc tgatgatggc caccgctgtg gcggggattg tcggtggccc gatgtcgggg
     1441 ttcatcatga cgcggctagc cggcgtgggt ggtttgcccg gatggcagtg gctcttcctg
     1501 ctggaaggcg tgcccgctgt tacgctcggc atcttcgcct tcttttatct cggcgattcg
     1561 cccgcggagg ttcgctggct cagcgaccgc gagaaggcgc ttatatcgcg cgaactgctc
     1621 gccgacgaac agtcgaagca ctccggccat ctcgacggac tgcgtggcgc gctcgccaat
     1681 ccgcgcgttt atctcgcggc gatcgtctac ttcgccgtga tgatgccgtt caatgcgatc
     1741 ggcttctggg cgccgacgat tattcgggat ctgggcgtcg cgaacgtgct cgatgttgga
     1801 ttgctgtcgg cgctcgtgtt catcgcggcg gcgatcggga cgtacgttgt gggagcgagt
     1861 tccgaccgga tgatggagcg ccgctggcat gtggcgggca g
//
LOCUS       DATGBK010000029         1642 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_324205, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000029 DATGBK010000000
VERSION     DATGBK010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324205"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            59..382
                     /locus_tag="VKJ77_00425"
     CDS             59..382
                     /locus_tag="VKJ77_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010091617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HMC43771.1"
                     /translation="MQNLSAPELAEWLADTSRPAPVLLDVREPWEIETAKLPNIVVIP
                     MRDIPARSEELDDEAQIVCICHHGARSAQVGMFLESRGFTQVFNLFGGIDAWSRQVDP
                     AVPTY"
     gene            455..>1642
                     /locus_tag="VKJ77_00430"
     CDS             455..>1642
                     /locus_tag="VKJ77_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HMC43772.1"
                     /translation="MRPMFALALCSLGAGFACSPASAVSLNQLYDEALETDAQLQSAR
                     AGLTADSEQLPQARAKLLPQLSATATASEQRTEFGGGFPASTGNSNGYTVSLTQPLIN
                     VASWQGYQQGQIALTSAQAQFAAARQDLIVRLGQAYFDALSAQDSVAIVRSQKASIAE
                     QLESAKRSFDVGQSTITDTNEAQAKYDQAISQEIAAQNDLEVKLAALEQIVGHPVTRV
                     DGLARGVTLPPPVPADMQQWVDMARDANYQVVLKQLAVSNSQRETLKAKAGHYPTLDL
                     VASYAKSSLGAAGAGNFGGNFGGGFGSGSNTLSPGIPAAAAELGNYGAYYTNATVGVQ
                     LTIPLYEGGATQSRVRQTLALEDKAEADLDAARRSAALSARQAFLGVSSGLAQVRALE
                     TAEQ"
BASE COUNT          311 a          543 c          503 g          285 t
ORIGIN      
        1 cgggtagcac cattgggccg cccggctcgc tgtcgctaac cactttcacc ggaatcccat
       61 gcaaaatctg tccgcacccg aactggctga atggctcgcc gatacatcgc gtcccgcccc
      121 tgtcctgctc gacgtccgcg aaccatggga aattgaaacc gccaagctcc cgaatattgt
      181 cgtcatcccg atgcgcgata tcccggcccg cagcgaagaa ctggacgacg aagcgcagat
      241 cgtctgcatc tgccaccacg gcgcccgtag cgcgcaggtc ggcatgttcc tggaatcccg
      301 cggctttacg caggtgttca acctgttcgg cggtatcgac gcatggtcgc gtcaggtcga
      361 cccggccgtt cccacgtact gatccgtccg ctttcgcttt agcgttctcg ttttagtcgc
      421 tctgcccccc gctcaccggt cccggacgaa tcccatgcgc ccgatgttcg cactcgcgct
      481 atgcagtctc ggcgccgggt ttgcatgctc gccggcttcg gccgtgagtc tcaaccagct
      541 ttacgacgaa gcgctcgaaa ccgacgcgca gctgcagagc gctcgcgccg gcctcaccgc
      601 cgacagcgag caattacccc aggcccgcgc gaaactgttg ccgcaactct cggcgacggc
      661 gactgccagc gagcagcgca ccgaattcgg tggcggtttc cctgcatcga cgggcaacag
      721 caacggttat acggtttcgc tgacgcaacc gctcatcaac gtcgcgagct ggcaaggtta
      781 tcaacaagga cagatcgcgc tgacgtccgc gcaggcgcag ttcgcagccg cccgtcagga
      841 cctgatcgtg cggctcggcc aagcctactt cgacgccctt tccgcgcagg acagcgtggc
      901 tatcgtgcgc tcgcagaagg catcgattgc cgagcagctt gagtcggcga aacgctcatt
      961 cgatgtcggc cagtcgacca tcaccgatac caacgaagcc caggccaaat acgatcaggc
     1021 gatctctcag gaaattgcgg cgcagaacga tcttgaagtg aagctggcgg cactggagca
     1081 gatcgtcggg catccggtga cgcgggtgga cggcctcgcg cgcggcgtaa cgctgccgcc
     1141 gcccgttccc gccgacatgc agcaatgggt cgatatggca cgcgacgcaa actatcaggt
     1201 cgtgctcaag caactggcgg tgtcgaactc gcagcgcgag actttgaagg caaaggccgg
     1261 ccattacccg acgcttgatc tggtcgcaag ttacgcgaag agcagtctgg gcgcggcggg
     1321 cgccggcaac ttcggcggga atttcggcgg cggttttggc agcggctcga atacgctttc
     1381 gccgggcata ccggcggccg cggccgaact gggcaactac ggcgcgtact acaccaacgc
     1441 gaccgtgggc gttcagctca ccattccgct gtacgaaggc ggcgcgacgc aaagccgcgt
     1501 gcgtcagact ttagcgctgg aagacaaggc agaagccgac ctggacgcgg cgcggcgttc
     1561 ggcggcgttg tcggcgcgac aggcattttt gggggtatcg agtggactcg cgcaggtccg
     1621 cgcactcgaa acggccgaac aa
//
LOCUS       DATGBK010000030         1770 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_324229, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000030 DATGBK010000000
VERSION     DATGBK010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324229"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..660
                     /locus_tag="VKJ77_00435"
     CDS             124..660
                     /locus_tag="VKJ77_00435"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HMC43773.1"
                     /translation="MEFVRAWGGAVILALLMTACYSGGGPNRSISGSGGPGALAGAPA
                     ASYDVKRLDGSVDSLARYRGSVVLMNLWATWCPPCLQEVPDLQRFSKEFAGRGVVVLG
                     IDQGESATAAGAFARSHSVTYRILVDEDQQYGRTYKAIGLPTTVIIDRAGHVARAVDG
                     PLTLAQMRDAVAPVLKEK"
     gene            657..1574
                     /locus_tag="VKJ77_00440"
     CDS             657..1574
                     /locus_tag="VKJ77_00440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43774.1"
                     /translation="MNVPLTATVAGCIAIGFVLAQYLRPGLDWYHSWQYAAVLVICAI
                     VLVRAALQELRTGPRAGGKAFAVAFVGALVVTIAGVLSGLLGPDTITISGAPGTVTPV
                     PDIGMAAFFAQADPGSLVRGDAQVTLRAKNGAELVVASGHNQYAGTSIAYLELQPAAY
                     IVARDGHGNRLTVTQPSNTSFLSPVLLFPNKQEIRGASQPLDTFATPALHRIIHALYY
                     SRAEAGNFTHDGVTGPAIVVSAADDAGKSLGIGLLRSGTPSVAGDVHLTATIGTYPRL
                     LVASAPHPAALIIGLLMFLGGIGASFLRR"
     gene            complement(1571..>1770)
                     /locus_tag="VKJ77_00445"
     CDS             complement(1571..>1770)
                     /locus_tag="VKJ77_00445"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HMC43775.1"
                     /translation="DGTFLIENGKVTRGIRNMRFNQSITAALRACEIASLQERTGGYS
                     YSLVTPAVKFEKFRFASTSPY"
BASE COUNT          298 a          540 c          568 g          364 t
ORIGIN      
        1 cggtgctgcg acatcgggat taccgcattc aaagacggcg agtgagtcgc cggcgttccc
       61 gatgcgcgat gcgcgccacg gcatcaggta aggaccctcc ggtaatggcg cgaagggcgt
      121 gtaatggaat tcgtgcgcgc atggggcggg gcggtcatcc ttgctctcct catgacggcg
      181 tgttactccg gcgggggtcc caatcgcagt atcagcggca gcggcggtcc gggcgccctc
      241 gccggtgcac ccgccgccag ctacgacgtt aaacgtttgg acggcagcgt tgattcactt
      301 gcccgctatc gcggttcggt cgtgctgatg aatctctggg cgacctggtg ccctccgtgc
      361 ttgcaagagg taccggatct tcagcgattt tccaaagagt tcgccgggcg cggcgtggtg
      421 gtgctcggga tcgatcaggg agagtccgcg acggccgccg gagcctttgc ccgatcgcat
      481 agcgtgacgt accgaatcct cgtcgacgaa gatcagcaat acggccgcac gtataaagcg
      541 atcggtttgc cgacgacggt tattatcgat cgcgccgggc acgtcgcgcg cgccgttgac
      601 gggccgttga cgctcgcgca aatgcgtgat gcggttgcgc cggtccttaa ggaaaagtga
      661 acgttcccct cacagcgacc gtcgcgggat gcatcgcaat cggattcgtg ctcgcgcaat
      721 atctgcggcc cggtttggac tggtaccact cgtggcaata cgcggcggtg ctggttattt
      781 gcgcgatcgt gcttgttcgc gcggcgctgc aagagctacg caccggtccg cgcgccggtg
      841 gcaaggcatt cgccgttgca tttgttggtg cgctagtcgt cacgattgcc ggcgtgctct
      901 ccggcttgct cggcccggac acaataacga tctccggcgc gcctggaacg gtcacgccgg
      961 tgcccgacat cggcatggcg gcattcttcg cgcaggccga tcccgggtcg cttgtgcgcg
     1021 gcgacgcaca ggtaacgttg cgcgcgaaaa atggtgccga actcgtggta gcaagcggtc
     1081 acaatcagta tgccggcacg tcaattgctt atcttgagtt gcagcccgcc gcgtatatcg
     1141 tggcgcgcga tggccacggc aaccgcctga ccgtaacgca gccgtcgaat acgagttttc
     1201 tttcgcccgt gttgctgttt ccaaacaagc aagagattcg cggcgcgtca cagccgctcg
     1261 atacatttgc gacgcccgcg ctccatcgca tcatacatgc gctctattat tcgcgcgccg
     1321 aggccggcaa tttcacccac gacggagtta cgggtccggc gatcgtcgtg tcggcagcgg
     1381 acgacgcggg gaaatcgctg ggcatcggcc tcttgcgctc gggtacgccc tcggtcgcgg
     1441 gtgacgttca tctcacggcg accatcggaa cctacccgcg gttactcgta gcgtctgcgc
     1501 cgcacccggc ggcgctgatt atcgggttgc tgatgtttct cggcgggatc ggcgcgagtt
     1561 ttctccggcg ctaatacggt gacgtgcttg cgaagcggaa tttctcgaac ttcaccgccg
     1621 gcgtaacaag cgaatagcta tagccgcccg tgcgttcttg cagcgacgcg atctcgcagg
     1681 cacgcagcgc ggcggtaatg gactgattga atcgcatgtt gcgaatcccg cgcgtaactt
     1741 taccgttctc gataaggaac gtgccgtcgc
//
LOCUS       DATGBK010000031         2661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_231635, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000031 DATGBK010000000
VERSION     DATGBK010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231635"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(140..316)
                     /locus_tag="VKJ77_00450"
                     /pseudo
     CDS             complement(140..316)
                     /locus_tag="VKJ77_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344678.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphatase class I"
     gene            complement(533..>2661)
                     /gene="pepN"
                     /locus_tag="VKJ77_00455"
     CDS             complement(533..>2661)
                     /gene="pepN"
                     /locus_tag="VKJ77_00455"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HMC43776.1"
                     /translation="AGKLVKLEQRMKTGSGKEKLLQVWVEPHDLDKTQHAMDSLVHSI
                     EWDERRFGLELDLDRFMIVAVSDFNMGAMENKGLNIFNTKYVLANPETATDVDFSNIE
                     AVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMAAGLEPGAASDAARAT
                     KRIDDVRVLRQMQFAEDAGPMAHPVRPESYVEINNFYTMTVYEKGSEVVRMYQTLLGR
                     DGFRRGMDLYFQRHDGQAVTCDDFRHAMADANDRDLAQFERWYSQAGTPRITVRTRYD
                     AAAKRYTLTLTQGYSEASEAARATQKGPLLIPFSVGLIGKSGADLPLKLEGEKEPQGT
                     TRVLEFTEQEQTFTFADVAEEPLPSLLRNFSAPVVVDYDYTNEQLAFLLAHDSDPFNR
                     WEAGQRLATRELLALADRASKGEELTLDDQVVSAFAQVLDDNTLTPAFQELALMLPSE
                     GYLAEQMAVSDPAAVHAARVFVSRRLATGLRERWLAVYEANRTPGEYRATPDDAGKRG
                     LKNLALAYLSQLDDPARAIELASAQYDAANNMTDRSAALSALLTAGASGSVNTSVADA
                     ALSDFYQRFEKEPLVIDKWFSLQATQRGGPKRNVLDIVRKLMQHPAFTLKNPNRARSL
                     IFSFCGANPAQFHAADGSGYTFWAEQVVALDAMNPQVAARLARTLEQWRRYTPALREK
                     AHAALERVASKVKSRDVREIVEKALG"
BASE COUNT          476 a          803 c          819 g          563 t
ORIGIN      
        1 cgcacattta acggcttgct gcgagacgcg tactctggtt ttcgagacga cggttttgca
       61 taaaaaaacc ggcgcagcgg cgccggtttt cgtgagcccg gataaaccgg ataaacgtgg
      121 ataaaggatt agcccctcag cccagcgctt cacccaacgc gcccttgctc acttgatagc
      181 cgatctgttt gcatgcgcgt gcgatcactt cgatcaacag ccgaaggtcc gcgggaaggt
      241 tttgatgttc ccgctgctgc tcgatcagat acttggtcag cgtcgtgcgg cgggaaatag
      301 atgagggggt cgacattgcg ttgggctcca ggagcgttag acgaatgcct cagattctac
      361 ccgctcggaa tgtgtctccc tatgtcacag gaatgcggtt gctgttcggc gagtctcttc
      421 gagcctcacg ctggctgatt ttcgggatat gcgtgcataa aaaaaccggc gccgaagcgc
      481 cggtttccga tgaggcgggt gaaagaggtt aaacgcttgc gaaattgaac gcttagccga
      541 gcgctttttc cacaatctcg cgtacatcgc gcgatttcac cttcgacgcc acccgttcca
      601 gcgccgcatg cgccttctcg cgcaaggcgg gcgtgtaccg gcgccattgt tcgagcgtgc
      661 gagcgaggcg tgcagccact tgagggttca ttgcgtcgag tgcaacgacc tgttcggccc
      721 agaacgtgta gccagaaccg tccgcggcgt ggaattgcgc cgggtttgcg ccgcagaagc
      781 tgaaaatcag cgagcgggcg cgattcggat ttttcagcgt gaacgccggg tgttgcatca
      841 gcttgcgcac gatgtcgagc acattgcgct tcggtccgcc gcgttgtgtt gcttgcagcg
      901 agaaccactt gtcgatgaca agcggctctt tctcgaagcg ttggtagaag tcgctgagcg
      961 cggcatcggc gacgctggtg ttcaccgaac ctgacgcgcc cgccgtcagc aacgcagaca
     1021 acgcagccga ccggtccgtc atgttgttcg cggcgtcgta ttgggcgctt gccagttcga
     1081 tcgcacgggc ggggtcgtcg agctggctca ggtaggcgag ggcaagattc ttcagcccgc
     1141 gcttgccggc gtcgtccggg gtcgcgcgat attcgcccgg cgtgcggttc gcctcgtaca
     1201 cggcgagcca acgctcgcgc agccccgtgg cgaggcggcg gctaacgaac acacgtgccg
     1261 cgtgaacggc ggcagggtcc gacacagcca tctgttccgc aagatatccc tcggacggca
     1321 acatcagcgc cagttcctgg aatgccggcg tgagcgtgtt gtcgtcgagt acctgggcga
     1381 atgcggatac cacttggtcg tcgagcgtca gttcctcacc cttcgatgcc cgatccgcca
     1441 acgcaagcag ttcgcgcgtt gcgaggcgct ggccggcttc ccatcgattg aatgggtcgc
     1501 tgtcatgagc cagcaaaaac gcgagctgct cgttggtgta gtcgtaatca accaccaccg
     1561 gtgccgagaa attgcgcagc agcgagggca acggctcttc ggcgacatcg gcgaacgtga
     1621 aggtttgttc ctgttccgtg aactccagca cgcgcgtagt gccttgcggt tctttctcac
     1681 cctcgagttt cagtggcagg tcggctccgc tcttgccgat caggccgacc gagaacggaa
     1741 tcagcagcgg acccttttgc gtcgcacgcg cggcctcgga cgcttcgctg tagccttgcg
     1801 tgagcgtcaa cgtgtagcgc ttcgcggctg cgtcgtaacg tgtgcgtacc gtgatccggg
     1861 gcgtgcccgc ctggctgtac cagcgctcga actgcgccag gtcccggtcg tttgcgtcgg
     1921 ccattgcatg ccggaagtcg tcgcaggtga cagcctggcc gtcgtgacgc tggaaataca
     1981 ggtccatgcc acgccggaaa ccgtcacgcc cgagcagcgt ctgatacatg cgcacgactt
     2041 ccgagccttt ttcatagacg gtcatcgtgt agaagttgtt gatctccacg tagctttccg
     2101 ggcgcaccgg gtgcgccatt ggacccgcgt cctcggcgaa ctgcatctgg cgcagcacgc
     2161 gaacgtcgtc aatccgtttg gtcgcacggg ccgcgtcgct ggccgcaccc ggttcgagcc
     2221 cggcggccat gtcggcggag aattcctggt cgcggaacac agtcaggcct tccttcaggc
     2281 tcaactggaa ccagtcgcgg caggtcacgc ggttgcccgt ccagttgtgg aagtactcat
     2341 ggccgaccac cgcttcaatg ttgctgaaat ccacgtccgt agccgtttcg ggattcgcga
     2401 gcacgtactt cgtattgaag atgttcaagc ccttgttttc catcgcgccc atgttgaagt
     2461 cgctcacggc aacaatcatg aagcggtcca ggtcgagctc aagcccaaag cggcgctcgt
     2521 cccattcgat ggaatgaacc agcgaatcca tggcgtgctg ggtcttgtcg agatcgtgag
     2581 gttcgaccca gacctgcagc agtttttcct tgcccgaacc ggtcttcatg cgctgttcga
     2641 gcttgaccag cttgccggcc a
//
LOCUS       DATGBK010000032         8184 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_208464, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000032 DATGBK010000000
VERSION     DATGBK010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 8184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8184
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208464"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..267
                     /locus_tag="VKJ77_00460"
     CDS             <1..267
                     /locus_tag="VKJ77_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HMC43777.1"
                     /translation="RNMAAGKLRLLAAFIERWFAAPGSTLTVESIMTTDVSTVCVTTS
                     IAKLVQIFAAYGHHHIPVLDTQEKLAGMITQADLILALYRQTHA"
     gene            440..853
                     /locus_tag="VKJ77_00465"
     CDS             440..853
                     /locus_tag="VKJ77_00465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC43778.1"
                     /translation="MKDSFRALRKEDFEQLSEFRYQMRRFERFSEQAAQDEGITPLQY
                     LLLLHIKGYPDRDWATVGELAERLQAHHHGIVALVTRCEALDLVKRKPSEIDRRQVEV
                     HLLKPGEKILSRLAELHRAELKSLAGTFRIPQIDL"
     gene            955..2766
                     /locus_tag="VKJ77_00470"
     CDS             955..2766
                     /locus_tag="VKJ77_00470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HMC43779.1"
                     /translation="MHEHASRGDFAANAHLLRITAIAVVIGALSTVTAYVLLHLINFF
                     TNLFFFQSLSFDGRSPAGNILGLWVIVIPVIGGLVIGLIARYGSEAIRGHGIPEAIEA
                     ILFGKSKMSPKVAVLKPLSSAIAIGSGGPFGAEGPIIMTGGALGSLLAQYFHLTAGER
                     KTLLVAGAVAGMTAVFGTPVAAVLLAVELLLFELRPRSLLPVAVACAVAGFTRPLLIG
                     GGALFPLQTIPLGPLGLISCVVAGLMAGAMSWGLSSALYKVEDLFGKLPIHWMWWPAL
                     GGIAVGIGGYFEPRALGVGYDVIGDLLHNHLAISVVAGLILVKAIIWVIALGSGTSGG
                     VLAPLLMMGAAMGTIVGPFLPGGEPAVWPLVFMAATLGGMMRAPIMATVFAFELTHDA
                     NVLLPLLMASAVAYGFTVLLMRRSILTEKIARRGYHIYREYGIDPLERHFVEEVMTLK
                     IETIDADMPVAEVLAKYFGEKQNHRAFPVTRDGALVGMIEREGLIARTGNPATQVMSD
                     LFGANTPIMALPGETCRIVSNRLAVHGLERLPVVSDAQSRRLVGLISRSDLVKPSLAF
                     FEEEERREMFRRSPLHHMKKRFAPLNRHKDDATRKHP"
     gene            3751..5037
                     /locus_tag="VKJ77_00475"
     CDS             3751..5037
                     /locus_tag="VKJ77_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018417873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP citrate lyase citrate-binding
                     domain-containing protein"
                     /protein_id="HMC43780.1"
                     /translation="MQVTGMLHGAKMLQFVDFPTTEVLGPDASEEEIKALIDKHGLIF
                     IKPVFKGGVGKKGKAGLIGKATDLKTALKEKERLYFVEHRVGHTVAKANGVTFEAGVP
                     AEQEVYFSITDSTHYRAPTMTLTHHGGMDIEELDRSQVAQIPFDPLTGLKAFVVANAL
                     SALGAPKQIISPLVQHLPKLWELYHDYGMTTLELNPIRMRVDKKGRMTPVACDFKCGF
                     DRDDPRWRRLNLPASLFAVDYSDFEQEINQLRTYQGQSDVYVINAGGTILAPTFGGGA
                     NSLVTQMLGDDAIISSDFGGNPPYEKMKEVARICFKHWIKQSNVLFIIGGKSNNTDIF
                     ETFRAMADALREHFSRHGATPLYVVIGRGGTNLVRGMGAMRDTLDALGLPYRFFGFDS
                     DMSEVVLHARKVDAWMKSGGREQVAARLGIASSQAA"
     gene            5066..7765
                     /locus_tag="VKJ77_00480"
     CDS             5066..7765
                     /locus_tag="VKJ77_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007741017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HMC43781.1"
                     /translation="MYKQGVGDFKYFVGTSSLAQVATRDDRVCVLNILGGESSDVTPV
                     GHVYSGGNVVFGTAPGKRGQVLETALGAVPVYNNVLEGINAGHRFNCGVIYLPPAAAR
                     DGVAELIRVNPELKKIFIVTEKLAVHDSREIRAMGQANGVDIFGGNSLGVADAWNQVR
                     IGGALGGDHPEEALRKGSIAIFSNSGNFTTTIATYLRMAGWGTTTSISSGKDVYVHFA
                     APEFAFALSNDARSKAAVLYVEPGGYYELDANFTKPVVACVVGRWKSKLTRSVGHAGA
                     MAGGADDALSKEGWFLEKFGVDGIFTPEHPVFSAKGALVTNIAHIPAALTAVMGENAC
                     RPDFASEGNLSLKPWFGASHGLTLPADLDLPVVEATAPYNEQVAALNQQIGSVPPRQT
                     MKDASGASQMDSKTQVTSLYGVSMLDAAQYPLEANVSLALLHEPGGENDRRLINVAIG
                     AGLNLHGHPALAAAQAAREAGNAPNTVLAAAASILGPRSQGEARQAARVLIDAFAAAG
                     MDDALDESFDTDLIAIDDPGLFVSAEPDAHAQAMLDGLRARGAKSVFVHYLQTLPGHP
                     TADAVLAAITTTLAWGPLMRKRVSRLTAESLPWWMRLFGALIGASVQAGQHQPDSFCG
                     IATSDILQRRPISEAAFVALLGLTPQPADLFSFQVLVGLLLSNGPGTISAQGAKGAVS
                     ADGPEDPERVQLNKGLIGFLTHTGYTHGGNGYEGIAFLIEQFKDSGLVDPGDPGHGID
                     LKALALKYVEAYARYKSNKKNTGSLDIQKIPGINHPVFKDKPVNHDPREVFIRNLMAE
                     RQEYNVFHDFYGTLVQTLFDAGVSRNVYCVNVDAVIAALLLKMLWKPYRNGEYSGAAL
                     ETAAFTIFLYPRMLGCAAEVDDHMNRGRNMDTRTPASQCQFVA"
     gene            7853..>8184
                     /locus_tag="VKJ77_00485"
     CDS             7853..>8184
                     /locus_tag="VKJ77_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008329259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43782.1"
                     /translation="MSNANATQSKFGMVVRVTSGNFLEMFDFFLFGFYATYIAKTYFP
                     ADSEFASLMLTFGTFGAGFIMRPVGAIVLGAYIDKVGRRQGLITTLAIMAMGTVLVAF
                     VPGYLTIG"
BASE COUNT         1598 a         2536 c         2442 g         1608 t
ORIGIN      
        1 agaaatatgg cggccggaaa gcttcggctg ctcgcggcat tcattgagcg atggttcgcc
       61 gcccccggtt caacgctaac cgtggagtcc atcatgacga ccgacgtgtc cacggtctgc
      121 gtcacgactt cgattgcgaa actcgtgcag atattcgccg cttatggcca tcaccatatt
      181 ccggtgctcg atacgcagga gaaactcgcc gggatgatca cccaggcaga cctgatactg
      241 gccctttacc gtcaaacaca cgcttagccg caccaccacc ctttatcact ggcgtgcgtg
      301 cccctgtgcg ccgcgcgcgc tgtcgcccac gagccaagcg ctcgtcacac aacgcgcccg
      361 gtcccgcgta cgcatgactc ttctatatat atcactatat gatataattt gaaattagta
      421 tcccgactgg accatcccca tgaaagacag cttccgcgcc ctgagaaaag aagactttga
      481 acagctgtcc gagtttcgtt accagatgcg gcggttcgaa cggttctccg agcaggctgc
      541 tcaggacgaa ggcattactc cgctgcagta cttgctgttg ttgcatatca agggctaccc
      601 ggaccgggat tgggcaactg tcggcgagct agcggaacgt cttcaggcac atcaccacgg
      661 aatagttgcg ctcgtcacgc ggtgcgaggc gctggatctg gtcaagcgaa agcctagcga
      721 aattgatcgc cgccaggtcg aggtccatct gctgaaaccc ggagagaaaa tcctctcgcg
      781 gttagccgaa ctgcatcggg cagaactgaa atcacttgcg ggcaccttcc gcattccgca
      841 gatcgatctt taaatcggtg cgtgccgaca ctgcccacct ttgctggcat tccagcaagg
      901 tcacgccgtt ccggtcgccg atgcaacgca aatctgaatt gataaggagt tgttgtgcac
      961 gaacacgctt caagagggga ttttgcagca aatgctcacc tgttgcgcat cacggccatt
     1021 gctgtagtga tcggtgcgtt gagcacggtt acggcctatg tcctgctcca cctgatcaac
     1081 tttttcacca accttttctt cttccagtcg ctgtcgttcg acggtcgctc gcccgcggga
     1141 aacatccttg gtctgtgggt gatcgtgata cccgtcatcg gtggactggt gatcggactg
     1201 atcgcacgct atggcagcga agccatccgt ggacacggca ttccggaagc gatcgaagcc
     1261 atcctgttcg gcaagagcaa gatgtcgccg aaggtcgcgg tgctcaagcc tctttcctcc
     1321 gcgatcgcca tcggtagcgg tggcccgttc ggtgcggaag ggcccatcat catgacgggc
     1381 ggcgcactgg gctcgctgct cgcgcagtat ttccacttga ccgcaggtga acgcaagacg
     1441 ctgctggtcg ccggcgccgt agccgggatg acggcggttt tcggtacacc tgtcgcggcg
     1501 gtcctgctcg cggtcgagtt gttactgttt gaactgcgcc cgcgtagcct gctgcctgtg
     1561 gccgtcgcgt gcgcggtggc cggtttcacg cgacctcttc tgatcggcgg cggcgccctg
     1621 ttcccgttgc aaaccatccc actgggtccg ctcggcctca tttcatgcgt ggtcgcgggt
     1681 ctcatggccg gcgcaatgtc gtggggcctg tcgtcggcgc tatacaaggt cgaggacctc
     1741 ttcggcaaat tgccgattca ctggatgtgg tggccggcgc ttggcggtat tgccgtgggc
     1801 atcggtggat atttcgagcc acgcgcgctc ggcgtaggtt atgacgtcat cggcgatttg
     1861 ctgcataacc atcttgctat cagcgtcgtg gccggcttga tactggtgaa ggcgatcatc
     1921 tgggtcatcg ccctcggctc cggcacatcc ggaggtgtac tcgctccact gctgatgatg
     1981 ggtgcggcca tgggaacaat cgtcggaccg ttcctgcctg gcggggagcc cgcagtatgg
     2041 ccgctggtat tcatggcggc gacgctcggc ggcatgatgc gcgcaccgat catggcgacc
     2101 gtgttcgcgt tcgaactcac ccatgacgcc aacgtactgt tgcctctgct catggcttcg
     2161 gctgtcgcat acggattcac ggtgctgctg atgcggcgct ccatcctgac cgagaagatc
     2221 gcgcgccgcg gttaccacat ctatcgggag tacgggatcg atcctcttga acgccatttc
     2281 gttgaagagg taatgacgct caagatcgag acgatcgatg cggatatgcc ggtcgccgag
     2341 gtgctggcga aatactttgg tgaaaagcaa aaccatcgcg cgtttccggt gacacgggac
     2401 ggcgcgctgg taggaatgat tgagcgtgag ggattgatcg cacgaaccgg caatccagcc
     2461 acccaggtca tgagcgacct gttcggcgca aacacaccga tcatggcgtt gcccggcgaa
     2521 acctgccgga tcgtgtccaa ccggctggcg gtgcatggac tcgagcggtt gcccgtggtg
     2581 tcggacgcgc agtcgcgtcg tctggtgggc ttgataagcc gtagcgatct ggtgaagccg
     2641 tcgctcgcgt tcttcgagga agaggagcga cgcgagatgt tccggcgctc tcccctgcat
     2701 cacatgaaga aacggtttgc accactgaac aggcataaag acgacgccac tcggaaacac
     2761 ccgtaagctt cccggcagac ggttccgtga accattcgta cgcactgaaa tcgttttttt
     2821 caccggccgc tatctgacgg tgacgaacgt tgtcttttga tggggtgcga ggatttcaac
     2881 cgcaccctcg gtaccgattc cgcttccttt caaactccga gacgtacctg gggatgatgc
     2941 gtcacgacat cggtcaaccc gatagcccga actgcaaggc atctgcaagg cgacgctgcc
     3001 gcacacggtc cccggtaaaa gacataagct gaaagcccga attccattcc gttgactcaa
     3061 tcgggcactt cacttccccg gtgcctcagt tgctgatcag atccggccgg acccgcgatt
     3121 accctgatgc gcgcgcacgg aaacccatac gacggccgcg cggctattcc ggcatttcgt
     3181 ttgcgcattc gcggattccc tgtcgcccgt ttaattaaat caatgacttg atcctctgat
     3241 ttcatcgtca tgccggttgg cataggcatt gcattgatga aacgacaatg ttgcgcgccg
     3301 gccgcggacg cgaaacaaca agaggagaca agatgaacgc gaacgacgac ctcgatccgc
     3361 tcgagaccga cgagtggttg gacgcgctgc gacctggtca gacgcatagc tgtattcagc
     3421 gtccgcccac ctcgccagcc gtgtaccgga tcatgcgcag cacgatcgtg cgtacgcccc
     3481 tcactgacct catgcaagcg tcaccacgcc tgggcaacga caatccgatc ctcgctgcgt
     3541 tggcacatcg tcagtttcca gtccgctgcc gttctatacg acatcggctt cggccacctc
     3601 tcgcatgcac tggccgatac gcacagccgc gacccgattc aaatcctaag acacagcaca
     3661 cctggcactg ccactcatga gggtatcgcc agcgagatcg cgccatcgcg tccagaagac
     3721 accgcaatgc ctttctgaaa ggggctcacc atgcaagtca ccggtatgct gcacggagcc
     3781 aagatgctcc agttcgtcga cttccccacg accgaggtgc tgggacccga cgccagcgag
     3841 gaagagatca aggcactgat cgacaaacac ggcctgatct tcatcaagcc ggtgttcaag
     3901 ggcggcgtcg gcaagaaagg caaggccggc ctgatcggta aggcgactga cctgaagacc
     3961 gctctgaagg aaaaggaacg cttgtacttt gtcgaacacc gggtcggcca cacggtggcc
     4021 aaggccaacg gcgtgacctt cgaagccggc gtgccagccg agcaagaggt ctacttttcg
     4081 atcacggact cgacgcatta ccgcgctccg accatgacgc tcacccatca cggcggcatg
     4141 gacatcgaag agctcgacag gagtcaggta gcgcaaatac cttttgaccc gctcaccggg
     4201 ttgaaggcct ttgtcgtggc caatgcgctg tctgcgctag gtgcgcccaa gcagatcatc
     4261 tcgccgttgg tgcagcacct gcccaagctg tgggagctgt atcacgacta cggcatgacc
     4321 acgctcgagt tgaaccctat ccgcatgcgc gtcgacaaga agggacgcat gacgcccgta
     4381 gcctgcgatt tcaagtgcgg cttcgaccgc gacgacccgc gctggcgccg gctgaatctg
     4441 ccggcaagcc tgttcgcggt cgactactcc gacttcgagc aggagatcaa tcaactgcgc
     4501 acgtaccagg gccagagcga cgtctacgtg atcaacgccg gcggcaccat cctcgcgccg
     4561 accttcggcg gcggcgccaa ttcgctcgtc acccagatgc tcggcgacga cgccatcatc
     4621 tcctcagact tcggcggcaa cccgccttac gaaaaaatga aagaggtagc acgtatctgc
     4681 ttcaaacact ggatcaagca gagcaacgtg ctgttcatca tcggcggcaa gtcgaacaac
     4741 accgacatct tcgagacctt ccgtgcgatg gccgatgcgc tgcgcgagca cttcagccgg
     4801 catggcgcca cgccgctgta cgtggtgatc ggccgcggcg gcacgaacct tgtgcgcggc
     4861 atgggcgcca tgcgcgacac gctcgatgcg ctcggactgc cctatcgctt cttcgggttc
     4921 gactcggaca tgagcgaggt cgtgctgcac gccaggaagg tcgatgcatg gatgaagtcc
     4981 ggcggtcgtg agcaggtagc ggcccggctc ggcatagcgt ccagccaagc cgcctgaagc
     5041 ttgccccacg cataaggaga gtgtcatgta caagcaaggt gtaggcgatt tcaagtattt
     5101 cgtcggtacc agttcgctgg cccaggtggc cacgcgcgac gatcgggtct gcgtgctcaa
     5161 catccttggt ggggagtcga gcgacgtgac gccggtcggt cacgtctatt caggcggcaa
     5221 tgtcgtgttc ggcacggcgc ctggcaaacg aggccaggtg ctggaaacgg cgcttggcgc
     5281 ggtgccggtt tacaacaacg tacttgaagg catcaacgcc ggccatcgct tcaactgcgg
     5341 cgtgatctac ctgccgccgg cagcggcgcg cgatggtgtg gccgaactga tccgggtcaa
     5401 cccggagttg aagaagatct tcatcgtcac cgagaagctc gccgtgcacg attcgcgcga
     5461 gatccgcgcg atggggcagg ccaatggcgt cgacatcttc ggtggcaata gcctgggcgt
     5521 agccgatgcg tggaaccagg ttcgcatcgg cggtgcatta ggtggcgacc atccggaaga
     5581 ggcattgcgc aaggggtcta tcgcgatctt ctccaattcc ggcaatttca cgaccacgat
     5641 tgcgacgtac ctgcgcatgg ccggctgggg cactacaacg tccatctcca gcggcaagga
     5701 tgtctacgtc cacttcgcgg cgccggagtt tgcgttcgca ctgtcgaacg atgcacgcag
     5761 caaggccgcg gtgctctatg tcgagcccgg cggttactac gagctcgacg cgaacttcac
     5821 taaacccgtg gtcgcttgcg tcgttgggcg ctggaagtcc aagctgacgc gctcggtcgg
     5881 gcatgctggc gcgatggccg gtggtgccga cgacgctctc agcaaggaag gctggttctt
     5941 ggagaaattc ggcgtggacg gcatcttcac gcccgagcat cccgtgttct ccgccaaggg
     6001 tgcgctggtg accaacatcg cccacatccc ggctgcactg actgcggtga tgggcgagaa
     6061 cgcctgccgg cctgacttcg cgtccgaggg aaatctctcg ctgaaaccct ggttcggcgc
     6121 aagccacggg ttgacgctgc cggccgatct cgacctgccc gtggtcgagg ctactgcccc
     6181 ttacaacgaa caggtcgcgg cgctaaacca gcagatcgga tcggtgccac cgcgccagac
     6241 gatgaaggac gcctcaggcg cctcgcagat ggactcgaag acccaggtca ccagcctgta
     6301 cggcgtgtcg atgctcgacg ccgcgcagta cccgctggaa gctaacgtca gcctggcact
     6361 gctgcatgag cccggcggcg agaacgaccg gcgcctgatc aatgtcgcga tcggcgccgg
     6421 cctcaacctg cacggccatc cggcattagc ggcagcgcag gccgcgcgcg aagccggtaa
     6481 cgcacccaac accgtgctgg ccgctgccgc cagcatcctc gggcctcgca gccaaggtga
     6541 ggcgcggcag gctgcgcggg tactgatcga cgctttcgca gcggccggca tggacgacgc
     6601 actggacgaa agctttgata ccgacctgat cgccatcgac gaccctggtc tgtttgttag
     6661 cgccgagccc gacgcccacg cacaagcaat gctcgatggc ctgcgcgcac gcggcgccaa
     6721 atcagtattc gtgcattacc tgcagacatt acccggccac cccaccgccg acgccgtgct
     6781 cgccgcgatc acgaccaccc tcgcctgggg gccattgatg cgcaagcgcg tctcgcggct
     6841 gaccgccgag agcctgccct ggtggatgcg cctgttcggc gcgctgatcg gcgcctcggt
     6901 gcaagcaggc cagcaccagc ccgacagttt ctgcggcatc gcgacgagcg atatcctgca
     6961 gcggcggccg atcagcgagg cggccttcgt cgcgctgctc ggcctcacgc cgcagccggc
     7021 cgacctgttc tccttccagg tgctcgtggg gctgctgttg tcaaacggac ccggcacgat
     7081 ttcggcccag ggcgcgaaag gcgcggtctc ggccgacggc cccgaggacc ccgaacgcgt
     7141 gcaactcaac aaagggttga tcggcttcct gacccacacc ggttacaccc acggcggcaa
     7201 cggctacgag ggcatcgcat tcctgatcga gcagttcaag gactcgggcc tggtcgatcc
     7261 cggcgacccg ggtcacggca tcgacctgaa ggcgctggcc ttgaaatatg tcgaggccta
     7321 tgcgcgctac aagtcgaaca agaagaacac cggcagcctg gatatccaga agattccggg
     7381 catcaatcac cccgtattca aggacaaacc cgtcaatcac gatccgcgcg aggtcttcat
     7441 tcgcaatctg atggccgagc gtcaggaata taacgtcttc cacgacttct acggcacgct
     7501 ggtgcagacc ttgtttgacg caggcgtgtc gcgcaacgtc tattgtgtca atgtcgatgc
     7561 ggtgattgcc gcgttgctgc tgaagatgct gtggaaacct taccgtaacg gcgagtattc
     7621 cggcgcggcg ctggaaacag cggcctttac gatctttctc tacccgcgca tgcttggctg
     7681 cgcagccgaa gtcgacgacc acatgaaccg cggccgcaac atggacaccc gcacgccggc
     7741 atcgcagtgc cagtttgttg cttgactacg tgtgaccgta tgcccggatc ggcatggcct
     7801 gcggcgggtc atgccggccc agcacaagat gcagattctg gagacggcga aaatgtcgaa
     7861 cgctaacgca acacaatcca aattcggaat ggttgtccgg gtgaccagcg gcaatttcct
     7921 ggagatgttc gatttcttct tgtttggctt ttatgcaacc tacattgcta aaacttattt
     7981 cccggccgac agcgaattcg cttcgctgat gctgacgttc ggcacgttcg gcgcgggttt
     8041 catcatgcgg cctgtcggcg cgatagttct gggtgcctat atcgacaagg ttggccggcg
     8101 gcaggggttg atcacgacgc tggccatcat ggcgatgggt actgtgctcg tggcctttgt
     8161 gccggggtat ctgacaatcg gctt
//
LOCUS       DATGBK010000033         1857 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_324248, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000033 DATGBK010000000
VERSION     DATGBK010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324248"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /locus_tag="VKJ77_00490"
     CDS             <1..288
                     /locus_tag="VKJ77_00490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HMC43783.1"
                     /translation="PDGRHRVRALTGIEQFNEQFGTHYSDDEVDTIGGLVTHRFGRVP
                     HRGEKVRIDDFVFEILRGDARQIHVLRVGRAANANLLAGNSRNHDNDDERD"
     gene            505..>1857
                     /gene="lnt"
                     /locus_tag="VKJ77_00495"
     CDS             505..>1857
                     /gene="lnt"
                     /locus_tag="VKJ77_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HMC43784.1"
                     /translation="MADSSSRITSRPMPAQKRAGTAQSLPFWHYLVAAVLGAANTLSF
                     APTPHGGWVELVIFTLFFAWLTRTSGWKSAALTGWAFGFGNFVTGVWWLYVSMHDYGG
                     MAAPLAAAAVALFSMYLAIYPALAGVVWSLCAGRARYDDNEDDAGSSSVAADEPRFVP
                     TWHGAFAFASAWALGEWLRGLVFTGFPWLASGYAQVDGPLAGFGSVAGVYGVGWVLGL
                     VAALLVQGFHGFRRSGSAAETSKAARLAPFVLAVALLASGMLLSLVEWTTPANAPLTV
                     RLLQGDVKQEMKFEQEGVDQSLALYKKLITEKPADLIVTPETAFPILAVQMPPDLALA
                     LRTFSDTTNSSILFGAIGVTASEGRVTGYTNSLFGITPNQRDVYRYDKHHLVPFGEFV
                     PEGFHWFVALMGIPLGDLGRGPPVQKSFFVHNQPIAVDICYEDIFGEEIARTIREQEA
                     P"
BASE COUNT          308 a          556 c          590 g          403 t
ORIGIN      
        1 ccggatggac ggcatcgcgt gcgggcgctc actggcattg agcagttcaa cgaacagttt
       61 ggcacccact attccgacga cgaagtcgat accatcggcg ggctggtcac gcaccggttc
      121 gggcgtgtac cgcatcgtgg agagaaggtg cgtattgacg acttcgtgtt tgagattctg
      181 cgcggcgacg cccgccagat tcacgtgctg cgcgtggggc gtgcagccaa cgcaaacctg
      241 ctcgcaggga actcgcgcaa ccatgacaac gacgacgagc gcgattgaac acgattgaac
      301 gcgtttgctt tcgcttgatc gaaataccca ttggaacgcc actgagcggc cctggtctgc
      361 tcaagcctgt aacacagcgt gttcacacta cgcgtcagtt gccagcggcg taccagctat
      421 gcaggcgttt tgcgcctttt ccgtgaaatg acgagcgccg gtctcgcttc gtcattcgct
      481 tactttctgc cgacctcgta atccatggcc gactcttcgt cccgtatcac ctcgcggccg
      541 atgcccgctc aaaaacgcgc cggcacggct cagtccttgc cgttctggca ttacctcgtc
      601 gcggccgtgc tgggtgccgc gaatacgctt tcgttcgcgc cgacaccgca cggcggttgg
      661 gtcgaactcg tgatctttac gctgttcttc gcgtggctga cgcgtaccag tggctggaaa
      721 agcgcggcgt tgacgggctg ggcatttgga ttcggcaact tcgtgacggg tgtgtggtgg
      781 ctgtatgtca gcatgcacga ctatggcggc atggctgcgc cgctggcggc tgcggccgtc
      841 gcgttgttct ccatgtatct cgcgatctat ccggcgttgg cgggcgtggt ctggtcgctg
      901 tgcgcgggcc gtgcgcgtta tgacgacaat gaggacgacg cgggctcctc ttccgtggcc
      961 gccgatgaac cgcgcttcgt acccacctgg cacggcgcgt ttgcattcgc gagcgcctgg
     1021 gcgctgggcg agtggttgcg cggccttgtg ttcaccggct tcccgtggct tgcgagtggg
     1081 tatgcgcaag tcgatggccc attggcgggg ttcggatctg tcgcgggcgt gtacggcgtg
     1141 ggttgggtgc tagggctcgt ggcggcgttg ctcgtgcagg gattccatgg cttcaggcgc
     1201 agcggctcag cggctgaaac atcgaaggct gcgcgcctgg cgccgttcgt cctggccgtg
     1261 gcgctgcttg cgtccggcat gttgttgtcg ctggtcgaat ggacgacccc ggcgaacgcg
     1321 ccgctcaccg ttcggctact gcagggcgac gtgaagcagg agatgaagtt cgagcaggaa
     1381 ggcgttgatc aatcactggc gctgtataaa aagctgatca ccgagaagcc tgcggatctt
     1441 attgtcacgc cggaaaccgc attccccatt ctcgccgtcc agatgccgcc ggatttagcg
     1501 cttgcgctgc gcactttctc cgatacaacg aattcatcca tcctgtttgg cgcaatcggc
     1561 gtgaccgctt cggaaggccg cgtaaccggc tacacgaaca gcctgttcgg catcacgccg
     1621 aatcagcggg acgtgtaccg ctatgacaaa catcacctcg tgccattcgg cgaattcgtg
     1681 ccggagggtt tccactggtt cgtggcgctc atgggcattc cgctcggcga cctcgggcgc
     1741 ggcccaccgg tgcagaaatc gttcttcgtt cacaaccagc cgattgccgt cgatatctgc
     1801 tacgaagaca ttttcggcga agagattgcg cggacaattc gcgaacagga agcaccc
//
LOCUS       DATGBK010000034         2871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_324261, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000034 DATGBK010000000
VERSION     DATGBK010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324261"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..882
                     /locus_tag="VKJ77_00500"
     CDS             <1..882
                     /locus_tag="VKJ77_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HMC43785.1"
                     /translation="RWPGDTGLAVYLGFNIEHFAFGEGLGAALGPVSPQPDVLNYSWR
                     EYGNRVGVWRCIELFDQLDLPSGTLINTSLYDHCPEVIDACLARGDELIAHGHTNAHR
                     QSDLDENSERALLLHCRERITAHAGTPPSGWLSPWISESCVTPDLLAETGYGYTLNWC
                     HDDRPVRMATRAGSLWSIPYPQELNDLPMMVGRHLDARDFADMIIDQFDEMLEQANRS
                     RHPQALVMGIALHPYLVGQPYRLRHLRRALQHIAAARANGDVWMTTPGAIARHMDEME
                     RLGLAGTPQQDHLPAEK"
     gene            879..1610
                     /locus_tag="VKJ77_00505"
     CDS             879..1610
                     /locus_tag="VKJ77_00505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC43786.1"
                     /translation="MTPKPALKVAAKAQQEADREPAQDADARLYQAIFDGVLNHRLTP
                     GTKLPEPELCQLFGVGRAVVRRVLERLAYDGIVALRPNKGAVIAEPTPEETREIFEAR
                     RSMERVLVELAVQRASAHDIKELRRQLADEHEAMHRFDQPSWARLASDFHLRIAALGG
                     NSILQRYLTELVSRCSLIVGVYEPPGHAPCEHEEHAAIVDCIEARDAAGAIARMEAHL
                     RELEERIETSRMLGEKSLGQLLGMS"
     gene            1664..2254
                     /locus_tag="VKJ77_00510"
     CDS             1664..2254
                     /locus_tag="VKJ77_00510"
                     /EC_number="1.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016646 - oxidoreductase activity, acting
                     on the CH-NH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HMC43787.1"
                     /translation="MEIDFEAITEYQRYKLMASLIVPRPIALVTTLSANGTINAAPFS
                     MFNMLGEEPPIVMISINRLDDGSLKDTAVNIARSREFVVHLCDEAMAEKMHRCGERLP
                     PNVSELEKVGLTSVASSLVAPPRIADAPVAFECTLWETLETTSRQIFIGCVHRLHARD
                     ELIDTETWRVRLQHYFPVGRFGASDYVTTRERFTLG"
     gene            2270..>2871
                     /locus_tag="VKJ77_00515"
     CDS             2270..>2871
                     /locus_tag="VKJ77_00515"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HMC43788.1"
                     /translation="MHNSTLATSTKGMVTSPHALASEAGLEVLRAGGNAIEAAIAIGA
                     ALSVTYPHFTGLGGDAFWVIGDRTGMLRTLSGIGQAAQTLPAFSSAIPLRGAGSTVTT
                     AATVDTWHQAYAISQTSWGGQRAWSSLFDRAIDYASEGFPVTPSQHFWQQFRADELRT
                     MPGFSAAFAPDGHAPAIGERFVQPALARSLERIATFGARE"
BASE COUNT          563 a          942 c          861 g          505 t
ORIGIN      
        1 cgttggccgg gcgacaccgg tctcgccgtc tatctcggct tcaacatcga acactttgcg
       61 ttcggcgagg gacttggcgc ggccctcggc ccggtctcgc cacagcccga cgtgctcaat
      121 tacagctggc gcgaatacgg caaccgcgtg ggcgtctggc gctgcatcga actcttcgat
      181 caactcgacc tgccctcggg cacgctgatc aatacatcgc tgtatgacca ctgcccggag
      241 gtcatcgacg cctgtctcgc gcgcggcgac gaactgatcg cacacggcca tacgaatgcg
      301 caccgccaga gcgacctgga cgaaaacagc gaacgcgcgt tgttgctgca ttgccgcgaa
      361 cgcatcaccg cgcacgccgg cacgccgcct tcgggctggc tctcgccatg gatctccgag
      421 tcctgtgtaa cacccgacct gctcgcggaa accggctacg gctacacgct caactggtgc
      481 cacgacgacc gccctgtgcg catggcaaca cgcgccggtt cgttgtggtc catcccttac
      541 ccgcaagaac tcaacgactt gccaatgatg gtcggccgtc atctcgacgc gcgcgacttc
      601 gccgacatga tcatcgacca gttcgacgaa atgctcgaac aggcgaaccg cagccgccat
      661 ccgcaggcgc tcgtgatggg catcgcgctg catccctacc tcgtcggaca gccctaccgg
      721 ctgcgccatt tgcgtcgggc actgcagcac attgccgccg cccgcgcgaa cggcgacgtg
      781 tggatgacaa cacccggcgc aatcgcccgc catatggacg agatggagcg tctgggactc
      841 gccggcaccc cgcaacagga ccaccttcca gcagaaaaat gactccgaaa cccgcattga
      901 aggtggctgc aaaggcccaa caagaagccg accgcgaacc agcgcaggat gccgacgccc
      961 gcctctacca ggccatcttc gacggtgtgc tcaaccatcg cctgacgccc ggcaccaaac
     1021 ttccagagcc agagttgtgc cagttgttcg gcgtcggccg tgcggtcgtg cgacgggtgc
     1081 tggagaggct cgcctacgac ggcatcgttg cattgcggcc aaacaaagga gcggtgatcg
     1141 ccgagccgac gcccgaggag acgcgcgaga ttttcgaagc acgccgctcg atggagcgcg
     1201 tgctggtgga gctcgccgtt caacgtgcga gtgcgcatga catcaaggaa ctgcgccgtc
     1261 agctagccga tgaacacgaa gccatgcatc gcttcgacca gccatcgtgg gcgcggcttg
     1321 caagcgactt tcaccttcgt attgcggctc tcggcggcaa ctcgatcctg caacgctacc
     1381 tgacggaact ggtgtcgcga tgctcgctga tcgtaggcgt ctacgagccg ccgggccacg
     1441 ccccgtgcga gcacgaggaa catgcggcga tcgtcgactg catcgaggcg cgcgacgcgg
     1501 ccggcgccat tgcgcgcatg gaagcgcatc ttcgcgaact ggaagagcgc attgagacct
     1561 cgcggatgct gggcgagaag agcctcgggc aactgctcgg catgagttga atccgggcgt
     1621 caacctccga acgtcaaacc tgagtccact gatccacgcc atcatggaaa tcgacttcga
     1681 agccatcacc gaatatcagc gatacaaact catggcgagc ctgatcgtgc cgcgcccgat
     1741 cgcgctggtc acgaccttga gtgcaaacgg cacgatcaac gccgcaccct tctcgatgtt
     1801 caacatgctg ggagaggaac cgcccattgt gatgatcagc atcaaccgtc tcgacgatgg
     1861 ttccctcaag gacacggccg tgaatattgc acgcagccgc gagttcgtcg tgcatctctg
     1921 cgacgaagcg atggctgaaa agatgcatcg atgcggagaa cgtctgccgc ccaatgtcag
     1981 cgagctcgag aaggtcggac tgacgtcagt tgcaagctcg ctggtcgctc caccgcggat
     2041 cgcggatgcg ccggtggcgt tcgaatgcac gttgtgggag acgctggaaa ccacgagccg
     2101 gcagatcttc attggatgcg tccacaggct ccatgcacgc gatgaactga tcgataccga
     2161 aacatggcgt gtgcgccttc agcattactt cccggtcggg cggtttggcg cgagcgacta
     2221 tgtgaccacc cgcgagcgct tcacgctcgg ctgaccggcg acgaaatcca tgcacaactc
     2281 taccctcgcc acgtccacca aaggcatggt caccagcccc cacgcgctcg cgagcgaagc
     2341 gggactcgag gtgctgcgcg cgggtggcaa cgcgattgag gcagccattg ctataggcgc
     2401 ggcgctgagc gtgacctatc cgcatttcac cggtctgggc ggcgatgcgt tctgggtcat
     2461 cggtgaccgg acgggcatgc tgcgtacgtt atcgggcatt ggacaggcgg cacaaacatt
     2521 gcccgcgttc tcctccgcca ttccgttgcg cggcgctggt tctacggtga cgacggcagc
     2581 aaccgtcgat acatggcatc aggcgtatgc aatcagccag acgtcatggg gcggccaacg
     2641 cgcatggtca tcccttttcg atcgcgctat cgactatgcg tcggaggggt ttccagtcac
     2701 gccatcgcaa cacttctggc agcagtttcg cgccgatgag ttgcgcacaa tgccgggctt
     2761 ttcagcggca tttgcacccg acggccacgc tcctgcgatt ggcgagcgct tcgttcaacc
     2821 ggcgcttgca cgcagtcttg aacgcatcgc gaccttcggc gcgcgggagt t
//
LOCUS       DATGBK010000035         3402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_231677, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000035 DATGBK010000000
VERSION     DATGBK010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3402
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231677"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..971
                     /locus_tag="VKJ77_00520"
     CDS             <1..971
                     /locus_tag="VKJ77_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC43789.1"
                     /translation="GPSGCGKTTLLRMIAGLETPSSGSVTFAGRDITHLPANQRDFGM
                     VFQSLALFPHMSVAENIAYPLRLRKMGKAAQGHRVAELLELIQLPHMANRPVTQLSGG
                     QRQRVAIARAIASSPKLLLLDEPLSALDAKLREAMQVEIRLLQQRLGITTIMVTHDQR
                     EAMTMADEIVVMEKGRIAQVGKPLDIYRNPVSAFGADFIGLGNILPVTHDGRGGVKLP
                     GGQQIVVADGAWVPESTADIRLLIRPEDVCVKNVSTDSGPNRLAGTVTFIRDVGATLE
                     ATIDCAGFTLTAATTQRETPGLTLGMPVQAELPAHACKLIAARPLH"
     gene            1033..1794
                     /locus_tag="VKJ77_00525"
     CDS             1033..1794
                     /locus_tag="VKJ77_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011349407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC43790.1"
                     /translation="MTYVFDFSGFGIYAGMLARGVAVTLWLTAVSTVLGGFVGIAGAS
                     ISVAGPRWARTLIATYVELIRNTPFLVQLFFVFFGLPGLGIHIDEMQAAVLAMTVNLG
                     AYATEIVRAGIDSIPRGQVQAAQALGLQGRQVFRHVVLPQALANVFPSLLSQVLIVML
                     GSAVVSQISVPDLTSAADFIQSRNFRSFESYLIVTVTYLFLSIVLRQLLNRLGRGLFA
                     GRSARTPVARPNWRNRWTQWFGGRRPQTLATERSQ"
     gene            1791..2447
                     /locus_tag="VKJ77_00530"
     CDS             1791..2447
                     /locus_tag="VKJ77_00530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007590377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC43791.1"
                     /translation="MTEFTLWDIARNLLLAARWTVLLSLIAFVCGGAVGLVLLAMRVS
                     PLPWLRRMVSLYVELFQGTPLVMQLFLAFFGLPLLGVEVSPWVAATVTLTLYTSAYLA
                     DIWRGCVEAVPRGQWAAGASLGMTFGQQLRYIVWPQARKIAVAPTVGFLVQVVKSTAL
                     TSIIGFIELTKTGSMITNTAFRPFPIYGMVALLYFAMCFPLTLYARRLQQLQHAQTRR
                     "
     gene            2515..3240
                     /locus_tag="VKJ77_00535"
     CDS             2515..3240
                     /locus_tag="VKJ77_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC43792.1"
                     /translation="MISINNVSKWYGAFQVLTDCTTEVKKGEVVVVCGPSGSGKSTLI
                     KAVNGLEPFQEGAITIDGQSVGDRKTNLSKLRSKVGMVFQHFELFPHLSITENLTLAQ
                     IKVLGRSKDEAATKALKLLDRVGLSAHASKFPGQLSGGQQQRVAIARALSMDPIAMLF
                     DEPTSALDPEMINEVLDVMVELAQEGMTMMCVTHEMGFARKVAHRVIFMDKGLIVEDD
                     KKEDFFANPKSDRAKDFLAKIVH"
BASE COUNT          631 a         1035 c         1039 g          697 t
ORIGIN      
        1 tcggcccgtc cggctgcggc aagacgacct tgctgcgcat gattgcgggc cttgagacac
       61 cgagctccgg cagcgtgact tttgcgggtc gcgacattac ccacttgccg gcgaaccagc
      121 gcgacttcgg catggtgttc cagtcgctgg cgctgtttcc gcacatgagc gtcgccgaaa
      181 atatcgcgta cccgctgcgg cttcgcaaaa tgggcaaggc tgcgcaaggg caccgtgtgg
      241 ccgaattgct cgaactgatc cagctgccgc acatggcgaa ccggccggtc acgcaactgt
      301 ccggtgggca gcgtcaacgc gtggcaatcg cgcgggcgat agcatcgtcg ccgaaactgt
      361 tgctgctcga tgagccactc tccgcactcg acgccaagct gcgcgaagcg atgcaggtcg
      421 aaatccgcct gctgcagcag cgccttggca tcacgacgat catggtcacg cacgaccagc
      481 gcgaagcgat gacgatggcc gacgagatcg ttgtgatgga aaaaggccgc attgcgcagg
      541 tcggcaagcc actcgacatc taccggaacc cggtcagcgc gttcggcgcc gacttcatcg
      601 ggctcggcaa catccttccg gtcacgcatg acggacgcgg cggtgtaaag ctgccgggcg
      661 gccagcagat cgttgtggct gatggggcat gggtgccgga atccacggcg gacatccgcc
      721 tgctgatccg tcccgaagat gtttgcgtta agaacgtctc aactgacagt ggtcctaacc
      781 gtcttgccgg gacggtcaca tttatccgtg acgtcggcgc aacgctggaa gcgacgatcg
      841 actgcgccgg cttcacactg acagccgcca ccacgcaacg cgaaacgccc ggcctcacgc
      901 tcggcatgcc cgtgcaggcc gaattgcccg cgcacgcctg caagctgatc gcggctcgcc
      961 cgcttcattg agccttcaat ttaaccggtt tcattcaact caccgccctc acctgaccat
     1021 gagcaacccg ccatgaccta tgtgttcgat ttcagcggct tcggcatcta cgcgggcatg
     1081 ctcgcgcgag gcgtcgccgt cactctttgg cttactgctg tctcgacggt actcggcggc
     1141 ttcgtcggca ttgcgggcgc aagcatcagc gtcgccggcc cccgctgggc ccggacgctg
     1201 atcgcaacct acgtcgagct gatccgcaac acgccgtttc ttgtgcagtt gttctttgtg
     1261 ttcttcgggc tgccgggtct cggcattcat atcgacgaaa tgcaggcagc agtcctcgcg
     1321 atgacggtca atcttggcgc ctatgcgacc gaaatcgtcc gcgccggcat cgactcgatt
     1381 ccgcgcggcc aggtgcaggc agcgcaggcg ctgggcttgc agggacgcca ggtgttccgc
     1441 catgtggtgc tgccgcaggc gctggccaat gtgtttccgt cgctcctgag ccaggtgctg
     1501 atcgtgatgc tcggctccgc cgtggtctcg cagatctcgg tgcccgactt gacgtctgcg
     1561 gccgacttca tccagtcgcg taacttccgc tcgttcgaga gctacctgat cgtgaccgtg
     1621 acctatctgt tcctgtcgat cgtcttgcgc caactgctga accggctggg ccggggcctc
     1681 tttgcgggac gctcggcacg cacgccggtt gcgcgaccca actggcgtaa ccggtggacc
     1741 cagtggttcg gcgggcgtcg tccgcagacg ttggcaacgg agcgctcgca atgaccgaat
     1801 tcactctgtg ggatatcgcg cgcaatctgc tgctcgccgc gcgctggacc gtactgctgt
     1861 cgttgatcgc tttcgtctgc ggcggtgcag tcgggctcgt gctgctcgcg atgcgcgtgt
     1921 cgccgttgcc gtggctgcgc cgtatggtct cgctctatgt cgagctattc cagggcacac
     1981 cgttggtgat gcagttgttc cttgccttct tcggcctgcc gttgctgggc gtggaagtat
     2041 cgccgtgggt tgccgccact gtcacgctga cgctctatac cagcgcctat ctcgccgata
     2101 tctggcgtgg ctgcgtcgaa gcggtgccgc gcggccaatg ggcggcaggc gcgagtctag
     2161 gcatgacgtt tggccagcag ttgcgctaca tcgtgtggcc gcaggcaagg aagatcgcag
     2221 tcgcgccgac cgtcggtttt ctggtgcagg tcgtcaagag caccgcattg acatcgatca
     2281 ttggattcat tgaactgacg aagactggct cgatgatcac caataccgcg ttccgcccgt
     2341 ttccgatcta cggaatggtc gccctgctgt acttcgccat gtgcttcccg ttgacgctgt
     2401 atgcgcggcg tctgcagcag ttgcaacacg cacagacacg ccggtgacac ggtcaccgcg
     2461 ccgcgccgcc aggtggattt gctcaacgaa gctcaatcag gaatggattt cacgatgatc
     2521 tcaatcaaca acgtttcgaa gtggtacggc gctttccagg tgctgaccga ctgcacgacc
     2581 gaagtcaaaa aaggcgaagt ggttgtggta tgcggcccgt cgggttcggg aaaatcgacc
     2641 ttgatcaaag cggtcaacgg ccttgagcct ttccaggaag gcgcaatcac gatcgacggc
     2701 cagtccgtcg gtgaccgaaa gactaatctc tcgaagctgc ggtccaaagt gggcatggtg
     2761 ttccagcact tcgaattgtt cccgcacctg tcgatcactg aaaacctgac attggcgcag
     2821 atcaaggtgc tcggccgttc gaaggacgaa gccgcaacga aggcactcaa gctgctggat
     2881 cgcgtcgggc tcagcgcgca tgcgagcaag tttccgggtc aactgtcggg cggtcagcag
     2941 cagcgggtcg cgatcgcacg tgcgctatcg atggacccca tcgcgatgtt gttcgacgaa
     3001 ccgacgtcgg cgctcgaccc tgagatgatc aacgaagtgc tcgacgtgat ggtcgagctc
     3061 gcgcaggaag gcatgacgat gatgtgcgtc actcacgaga tgggctttgc acgaaaggtg
     3121 gcgcaccgcg tcatctttat ggacaagggc ttgattgtcg aggacgacaa gaaggaggat
     3181 tttttcgcga accctaagtc cgatcgtgcg aaggattttc tcgcaaaaat cgtccattga
     3241 tgttccctgc gagccgctaa cactatacgg agtactacat atattgggaa tcaggcgaac
     3301 aagcaccttg aatgacgcaa cgaggccttg ggtttgcagt cattctgaaa gcgacgccgt
     3361 aaggtggata aaccaaagac aacctgagta cgacgcgcga cg
//
LOCUS       DATGBK010000036         2620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_254790, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000036 DATGBK010000000
VERSION     DATGBK010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254790"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..1313)
                     /locus_tag="VKJ77_00540"
     CDS             complement(147..1313)
                     /locus_tag="VKJ77_00540"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC43793.1"
                     /translation="MSTQAIKSLQIGMHWFPERAGGLDRMYHTLVGALPGAGVTVRGV
                     VAGSARVAADTEGAIHGFGPAAQSLPRRLMAARRALRASLSRERPDVVSSHFALYTFP
                     GLDVTRGIPQVSHFQGPWADESHVEGADSIGQRTKRMLEQRVYARSSRLIVLSEAFGE
                     ILQSRYAIPAERIRVVPGCVDVSQFNVPLSRSDARRRLQLPQDRPIVLAVRRLVRRMG
                     LEDLIEAMKRVKAKQPEVLLLIAGKGRLAEELQARITEAGLDDNVRLLGFVPDRHLAA
                     LYRAADVSIVPTVALEGFGLITVESLASGTPVLVTPVGGLPEAVAALSANLVLPSTGV
                     DAIADGLIGALDGSLILPTEQECRIYARENFDTPVIAKRVAAVYSEAIDAGIGH"
     gene            complement(1366..>2620)
                     /locus_tag="VKJ77_00545"
     CDS             complement(1366..>2620)
                     /locus_tag="VKJ77_00545"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC43794.1"
                     /translation="NDGQGRVNYEIARAALAEGHQVTLLASHVAPELASEARLRWVAI
                     KVGRFWPTKLFKQQIFALKTGLWLRSHKKEYDVLHVNGFISWAKADVNTAHFVHGGWL
                     RSPYYPFKLTGGLWSAYQVVYSRVNARLEHWAYQRSKIIAAVSEKVAIEIRANGVAGE
                     RIEVVYNGVDTSAFSAARVNGADRKSFGLRDDACLLLFVGDLRTPRKNLDTVLKALVQ
                     LPAHVQLVVAGYIPGSPYPDEAKALGIADRVHFLGLVKNMPTLMHSVDAFVFPSRYEA
                     MSLSLLEALAAGLPIITAKTAGGAEIIGTDCGIVLDDPDDATALAGAITQLADAPELR
                     RDMGEAARLLADQFGWARMARRYLDLYRGFANQAGAAASGEVQAESGTPKAAALMKST
                     TASATVGSVHPMLPGMSNESHASPV"
BASE COUNT          590 a          952 c          656 g          422 t
ORIGIN      
        1 agaaaatccg actctcgcag accactaaca ctgaaagcag caacccggca ttgactcaga
       61 ccgctaaccc tggaacctgg caacccggca ccaaccccga ccgccaagcc caaacccacc
      121 cccccatccc cgagtgcgaa cgaaaatcaa tgccctatgc cggcatcaat cgcttcgcta
      181 taaacagcag ccacacgctt ggcgatcacc ggcgtatcga aattctcgcg tgcatagatc
      241 cggcactcct gctccgtcgg caatatcaac gacccatcca gcgcaccaat caagccatcg
      301 gcaatagcat ccacccctgt cgacggcaaa acaagattcg ccgataaagc cgcaaccgcc
      361 tccggcaaac cgcccaccgg cgtcaccaac accggcgttc ccgaagcgag cgactccacc
      421 gtaatcaacc caaaaccctc cagcgcaact gtcggcacaa tactcacatc cgccgcacga
      481 tacagcgccg ccaaatgccg gtcaggcaca aaaccaagca gccgaacatt gtcgtcaaga
      541 cccgcttcgg taatacgcgc ctgcaactcc tcagcaagac gccccttccc cgcgatcaac
      601 agcaacacct ccggttgctt cgccttcacg cgcttcatcg cttcaatcaa atcctccaac
      661 cccattcgcc tgaccagtcg ccgcaccgca agcacaatcg gccggtcctg cggcaactga
      721 agccggcgac gagcatcgga acggctcagc ggtacattga actgcgagac atcaacacac
      781 cccggcacca cgcgaatccg ctccgcagga atggcatagc gcgactgcaa tatctccccg
      841 aacgcctccg acaatacgat caaccgcgac gaacgcgcat acacccgctg ctcaagcatc
      901 cgcttggtcc gctgaccaat ggaatcagca ccctcaacat ggctctcatc ggcccacggt
      961 ccctggaaat gcgagacctg tggaatgcca cgcgtgacat cgagacccgg gaacgtataa
     1021 agcgcgaagt gcgacgagac cacatcgggc cgctcacggc tcaacgacgc ccgcaacgcc
     1081 cggcgtgccg ccatcaagcg gcgcggcaac gactgcgccg ccggaccaaa gccgtgaatc
     1141 gcgccctccg tgtccgctgc cacccgcgcc gatcccgcaa ccacgccgcg taccgtgacg
     1201 cccgcacccg gcaacgcgcc gaccaacgtg tgatacatac ggtccaaacc gcccgcgcgc
     1261 tccgggaacc agtgcattcc aatttgcagc gacttgatgg cttgcgtgct catgtccacg
     1321 accctgatcg aaattgttga tggataacga caaccgtcaa attgctcata ccggcgacgc
     1381 gtgtgattcg ttcgacatac ccggcagcat gggatggacc gagcccaccg ttgcgcttgc
     1441 cgttgtgctc ttcatcagcg ccgccgcttt aggcgtcccg ctctccgcct gcacttcacc
     1501 cgatgccgcc gcgccggcct gattcgcaaa accgcgatac agatccagat accgccgcgc
     1561 catacgcgcc cagccaaatt ggtccgccag cagccgcgca gcttcaccca tgtcacgacg
     1621 cagttcaggt gcatcagcaa gctgggtgat cgcgcccgcg agcgcagtgg cgtcgtcggg
     1681 atcgtcgagc acaatgccgc agtccgtgcc gataatctcc gccccacccg ccgtcttggc
     1741 cgtaatgatc ggcagacccg ccgcgagcgc ttccagcagc gagaggctca tcgcttcgta
     1801 ccgcgatggg aaaacgaagg catcgacgga atgcatcagc gtgggcatgt tcttcaccag
     1861 gcccaggaaa tgcacgcgat ccgcaatgcc cagcgccttg gcttcatccg gataagggct
     1921 gcccgggata taaccggcca ccaccagttg cacgtgggcg ggaagttgca ccagcgcctt
     1981 aagcaccgtg tccagattct tgcgcggcgt gcgcaggtcg ccaacgaaca gcaacaggca
     2041 ggcatcgtct cgcagtccga atgattttct gtcggcaccg ttcacgcggg ctgcactgaa
     2101 cgcgctcgta tccacaccgt tataaaccac ctcgatacgc tcaccggcca cgccgttcgc
     2161 gcgaatctcg atagccactt tctcggacac cgcggcaatg atcttcgagc gctgataggc
     2221 ccagtgttca agccgtgcat tcacgcggct gtacaccacc tgatacgcag accacaagcc
     2281 accggtgagc ttgaacggat agtacggact gcgcagccag ccgccatgca cgaagtgcgc
     2341 ggtattcacg tcggctttcg cccacgatat aaacccgttg acatgcagga cgtcgtattc
     2401 cttcttgtgc gacctgagcc acaaccccgt cttcaacgcg aagatctgct gcttgaacag
     2461 cttggtcggc cagaaacgcc cgaccttgat cgcgacccat cgcaagcgcg cctcggaggc
     2521 aagctccggc gcaacgtgcg atgccagcag cgtgacctga tggccttccg ccaatgcagc
     2581 gcgcgcgatc tcgtagttca cgcggccttg cccatcgttg
//
LOCUS       DATGBK010000037         1529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_46646, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000037 DATGBK010000000
VERSION     DATGBK010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46646"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..529
                     /locus_tag="VKJ77_00550"
     CDS             <1..529
                     /locus_tag="VKJ77_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HMC43795.1"
                     /translation="TQGRHRYYRLAGSHVALALENLASIAPVPSGGTVRRMPPSRDAR
                     DLQFARCCYDHLAGGLGVAVTQALQDRALVVATDDKQFDVTPAGIEWFNSMGLDMAGL
                     KPTRRGLARQCLDWTERRHHLAGPLGVAFMTQLCAKGWVRRLKNSRAVQVTPKGWAGL
                     KEQLGVDERCVEKVA"
     gene            619..1113
                     /locus_tag="VKJ77_00555"
     CDS             619..1113
                     /locus_tag="VKJ77_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6496 domain-containing protein"
                     /protein_id="HMC43796.1"
                     /translation="MPEKKTIERAHAAKRAGKSPSTQAGAFVKEQIDHVREGKHGAKS
                     AKQAIAIGLSEARRSGVGLKAPKKGAASAATRKKAAKDTQAGQHKTERSTSTESKSKR
                     SATSTRVLKRESTQAASPKSLSKRAHASASRRSAADRSASAKKGWQTRRKAVSKAGAT
                     RHAR"
     gene            complement(1273..>1529)
                     /locus_tag="VKJ77_00560"
     CDS             complement(1273..>1529)
                     /locus_tag="VKJ77_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC43797.1"
                     /translation="AHALRDAPHVKDVRNLGMVAGIELESRDGAPGARAYEAFVKCFE
                     AGVLVRYTSDILAFSPPLIIEDDQIEHMFSTVRKVLETVK"
BASE COUNT          305 a          459 c          509 g          256 t
ORIGIN      
        1 aacgcagggg cggcatcggt actaccgtct ggccggttcg cacgttgcgc tggcgcttga
       61 aaatcttgca tcgatcgcgc cggttccatc gggtggcacg gtgcgccgca tgccgcccag
      121 cagggacgct cgtgacctgc agttcgcacg atgctgctat gaccatctcg ccggcggtct
      181 gggcgtggct gtgacgcaag cgttgcagga tcgcgcgctg gttgttgcaa ccgatgacaa
      241 gcaattcgat gtaacgccgg ccggcatcga gtggtttaac agcatgggtc tggacatggc
      301 cgggctgaag ccgacccggc gtggactcgc ccggcagtgc ctcgactgga ccgagcggcg
      361 gcatcatctg gccgggccgt tgggcgtcgc gttcatgacg cagctttgcg cgaaggggtg
      421 ggtacgccgc ttgaaaaact cccgggccgt gcaggtgaca ccgaagggat gggccgggct
      481 taaagaacag ctcggcgtgg acgagcgatg cgttgagaag gtcgcttagg cgtcagtctc
      541 tcagtagcgc gatatggcac gcgcgttgct gcgctggcta gtgctagtcc aacgacgttc
      601 tctcaaagga gtgtcaccat gcctgagaag aaaaccatcg aacgcgcgca tgcggccaaa
      661 cgtgcgggaa agtcacccag cacgcaggcc ggcgcgttcg tgaaggagca gatcgatcac
      721 gtgcgcgaag gcaagcacgg cgcgaagtcc gcgaagcagg cgatcgcgat cgggttgtcg
      781 gaggcgcgca ggtccggtgt gggcctgaag gcgccgaaga agggcgcggc ctccgctgct
      841 acccgcaaga aagcggcgaa ggacacccag gccggtcagc acaagaccga acgcagcacg
      901 agcacggaat cgaagtcgaa acgttccgcg acgtccacgc gagtgcttaa acgtgagagc
      961 acccaggccg cctcgcccaa gtcgctctcg aagcgggcgc atgcgagcgc aagcaggcgc
     1021 tctgcggctg atcgttcggc ttccgccaaa aagggctggc agacgcgccg caaggcggtg
     1081 tcgaaggcgg gcgcgacgcg gcatgcgcgc tagagcgcgg ttcgtgcagg agcgcagttc
     1141 gtaagtcgca gcgcttccac gaaaaaggcc gttccggatc aaccagaacg gccttgacgc
     1201 ttgcaagtac ggtttgcacg ccggcttgta tgccgcttaa atcagtgacc ttaagcggct
     1261 atcgaacctg cgttatttca ccgtttcgag caccttgcga actgtgctga acatgtgctc
     1321 gatctggtcg tcttcaatga tcaacggcgg cgagaacgca agaatatcgc ttgtatagcg
     1381 caccagaacg cccgcctcga agcatttcac gaacgcttcg taggcccgtg cgcccggcgc
     1441 gccatcgcgc gattccagct cgatgcccgc caccatgccg agattgcgca cgtccttcac
     1501 gtgaggcgca tcgcgcaacg catgagcgg
//
LOCUS       DATGBK010000038         2852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_459, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000038 DATGBK010000000
VERSION     DATGBK010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2852
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /locus_tag="VKJ77_00565"
     CDS             complement(<1..339)
                     /locus_tag="VKJ77_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC43798.1"
                     /translation="MKENQRNMGFSTEMNCYERLQARGLKLQDVPAPIGNFTHCTREG
                     NLLFLSGQGPLDETGHLMTGKVGDNVTADEAYAHALLVGLNLLSVLHVELGDLSRVKR
                     IVKLLGMVNAT"
     gene            complement(396..1256)
                     /locus_tag="VKJ77_00570"
     CDS             complement(396..1256)
                     /locus_tag="VKJ77_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC43799.1"
                     /translation="MAAKPRQTMQEPQQVEQPASDLSAAAPATRTRTSAIDRAVQILD
                     ALQDTNRPTTAYEIARLVGAPLSTVYSIINDLVDKNLLARTPEGAIWLGSRLYGYGLT
                     YASSLDYLAVAHEEMHRLSTQVGETVQVCGLEEGMMVVLQMAEGPGHFRVTSRVGSRV
                     PLNWTASGRLLVGHLPDAERIAYFERYAKPSPTARAETRPDVLAKMAREALDAHLSIQ
                     IGESDASVACLAAPVLDQAGDCVFTISIVMPEAKALQSTERFGAELKVVAARIEARLG
                     WQRRAPDVIG"
     gene            1371..2570
                     /locus_tag="VKJ77_00575"
     CDS             1371..2570
                     /locus_tag="VKJ77_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HMC43800.1"
                     /translation="MDIYSRFGLRPVINVSGTMTSLGASIVATPVVEAMAAILPQFVQ
                     IDDLQRKASAVIAQACGSESGYITASCSAAITLGIAATMTGDDPGLIERLPDTSGLRH
                     EVVVQTGHLVNYGAPIDQAIRLAGARVVAVGAATESHGYQLSAAISERTTAALYVVSH
                     HTVQFGLIHVEEFIALAHAKGVPVIVDAASEYDLTRFIAAGADLVLYSAHKFLGGPTA
                     GIVAGKKALVRAAYFQNGGIGRGMKVGKEGIAGAIAALEQWQQRDHAAVRARERGYLE
                     LWREALNGRPGVRAEIDADPTGNPLDRLKLSIDAREARISAWDLADALAHPPEGSVPV
                     IVRDHEAELNFFFIDPCNLHPGQEHSVLDRLLDELERAQHAPHPLVTPFFQRDARRSA
                     GRRNWPD"
     gene            2599..>2852
                     /locus_tag="VKJ77_00580"
     CDS             2599..>2852
                     /locus_tag="VKJ77_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010117916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC43801.1"
                     /translation="MIDTPDFSGVALPCTFSNPYSIEENKNSSMDALLSTRGNQMHKQ
                     ILRTAVAVAVTGSVAQAAFAQSSVTLYGIVDAGFTYTNNQ"
BASE COUNT          549 a          879 c          839 g          585 t
ORIGIN      
        1 cgttgcattg accatgccga gcagcttgac gatgcgtttt acccggctta aatcgcccag
       61 ttccacgtgc aggaccgaca acaggttaag ccccacgagt aacgcatgtg catacgcttc
      121 atcggcggtg acgttatcac cgaccttgcc tgtcatcaga tgcccggttt catcaagcgg
      181 cccttgcccc gacaagaaca gcaggttgcc ttcgcgtgta cagtgagtga agttgcctat
      241 gggagcgggc acgtcctgaa gttttaagcc gcgggcctgc agtcgttcat agcagttcat
      301 ctcagtcgaa aatcccatgt tgcgttggtt ctctttcaag tgttgagggc aaggttcaaa
      361 taccggctaa ccaacgccgc gtttagccga cgcatttagc cgatcacgtc aggcgcgcgg
      421 cgctgccagc cgagccgcgc ttcaatgcgc gcggcgacaa ctttcagttc ggcgccaaaa
      481 cgttcagtac tctgaagcgc cttggcttcc ggcatcacga tcgaaatggt gaacacgcag
      541 tctcccgcct gatcgagcac cggggcggcg agacacgcca cggacgcgtc cgactctccg
      601 atctggatcg acaggtgcgc atccagcgcc tcgcgcgcca ttttcgcgag cacgtcagga
      661 cgcgtctcgg cgcgcgcagt gggagacggt ttcgcgtacc gttcgaaata ggcgatgcgc
      721 tctgcgtccg gcagatgccc caccagcaat cgtcccgacg cagtccagtt gagcggcacc
      781 ctgcttccca cgcgcgaagt cacgcggaaa tggcccggcc cctcggccat ttgcaacacg
      841 accatcatcc cttcttcgag tccgcacacc tgcaccgtct cgccgacctg cgtcgataag
      901 cggtgcatct cttcatgcgc gactgccaga taatcgagtg aactcgcata cgtcagaccg
      961 tagccgtaga gccgcgagcc gagccagatc gcgccctcgg gcgtgcgggc cagcaggttc
     1021 ttatccacta ggtcattgat gatcgaatag accgtggaca acggtgcacc gaccagtcgc
     1081 gcgatttcat acgcggtggt cggacggttg gtgtcctgca acgcgtcgag gatctgcacc
     1141 gcccggtcga tcgcgctggt gcgcgtgcgc gttgcgggcg cagcggcgga aaggtcggag
     1201 gccggctgct cgacttgctg cggttcttgc atggtttgac ggggcttggc ggccatcgcg
     1261 ctccttacga ctgattgttt ttgtacagtt tgacgcaagc gcatcgtatg ataatctaat
     1321 acacaattac aacatacatt ccacaataaa ggaatatcag gagccgcacg atggatattt
     1381 attcccgatt tggtctacgc ccggtcatca atgtctcggg cacgatgacg agcctgggtg
     1441 cgtccatcgt ggcgacgccg gtcgttgaag caatggctgc aatccttcca cagttcgtcc
     1501 agatcgacga cttgcaacgc aaggcatccg ccgtgatcgc gcaggcttgc ggcagcgaaa
     1561 gcggctatat cacggcatcc tgttcggcgg cgatcacgct cggcattgct gccaccatga
     1621 cgggcgacga cccggggctg atcgagcggt tgcccgatac aagcgggttg cgccacgagg
     1681 tcgtggtgca aacgggccat ctcgtcaatt atggcgcacc catcgaccag gcgatccggc
     1741 ttgccggcgc tcgcgtcgtg gcggtgggag cagccacgga gtcgcatggc taccagttat
     1801 ccgctgcgat cagcgagcgc acgaccgctg cgctctatgt tgtctcgcat cacacggtcc
     1861 agttcggatt gatccatgtg gaagaattca tcgctctcgc gcatgcgaag ggtgtaccgg
     1921 tcattgtcga tgcggcgtcc gaatatgatc tcacgcgctt cattgccgct ggcgccgatc
     1981 tcgtgctgta ttcggcgcac aagtttctcg gtggtccgac cgccggtatt gtcgctggca
     2041 agaaagcgct cgtacgtgcc gcctatttcc agaatggcgg cataggccgt ggcatgaaag
     2101 taggcaagga aggcattgcc ggcgccatcg ccgcgctcga gcaatggcaa cagcgcgacc
     2161 acgcagcggt ccgcgcccgt gagcgcggtt atctcgagtt gtggcgcgaa gcgctgaacg
     2221 gccgccccgg cgtgcgtgca gagatcgatg ccgatccaac cggcaatccg ctcgaccgcc
     2281 tgaagctgtc catcgatgca cgtgaggcgc gtatcagcgc ctgggacctg gccgacgccc
     2341 tcgcccatcc gcctgagggt agcgtgccgg tgatcgtccg cgatcacgag gccgaactga
     2401 atttcttctt catcgacccg tgcaatctgc atcccggcca ggagcacagt gtgcttgatc
     2461 gcctgctgga tgaactcgag cgcgcgcagc acgcgccaca tccgctggtc accccgtttt
     2521 tccagcgcga tgcgcggcgt agcgcaggcc ggcggaattg gcccgactga gtagcctgac
     2581 tggacctgat ttttttgtat gatcgatacg ccggatttct ccggcgtcgc tttgccttgc
     2641 acgtttagta atccttattc catcgaagag aacaagaatt catcgatgga tgcccttctt
     2701 tcgaccagag gaaaccagat gcataagcag atccttcgca cggccgtggc cgtcgccgtg
     2761 actggaagcg ttgcgcaagc cgctttcgcc caaagcagcg tgacgctcta cggtattgtg
     2821 gatgccggct tcacgtacac caacaatcaa aa
//
LOCUS       DATGBK010000039         2273 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_254824, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000039 DATGBK010000000
VERSION     DATGBK010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254824"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(234..1124)
                     /locus_tag="VKJ77_00585"
     CDS             complement(234..1124)
                     /locus_tag="VKJ77_00585"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HMC43802.1"
                     /translation="MTSIGATGLKLGPGRGDPEQALAALAKVELVISDCDGTLLYTDK
                     SLGEPAKEAVRNLTAAGVRFTVASSRPGKGMHSIVETLGIQSPFAAFNGGKLVDPAGW
                     KTLSAHWLPRDAAQTALESLERDGVDAWVFIDDQWYITNPGGEYVPLERRTVGYDAVV
                     VKRFEDIDLDSIEKIVASTKDAALLQRKEAEFQDTLKGRAVAMRSQAYYLDITHPLAN
                     KGEGVRELARLAGVALENVAVLGDMGNDVAMFDVAGVSIVMGQAPADVQSHATFVSAT
                     NDEDGFAAGLNALLAARKGK"
     gene            complement(1121..1972)
                     /locus_tag="VKJ77_00590"
     CDS             complement(1121..1972)
                     /locus_tag="VKJ77_00590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HMC43803.1"
                     /translation="MGTAARKAAVKKTAASKTTAVKTATGKTTKRSRAKERILAIDVG
                     GTGLKAAIIDAHGKMETERVKVATPHPCPPDVMVQKLVELVGPLLTPLPATQISIGFP
                     GVVRDNHVLTAPNLGNEFWRNIPLAQMLAEHLGNLPVRIINDAEMQGLAAIEGKGIEF
                     VLTLGTGAGTALFRDGELMPHLELAHHPVSKNKTYDEYIGNAARDKAGNKRWNRRVEK
                     IIGILSSLVNYDRLWIGGGNAANLNFDLPDNVKVVSNEAGIEGGARLWHPRSVRETRQ
                     LPAGAFE"
     gene            complement(1983..>2273)
                     /locus_tag="VKJ77_00595"
     CDS             complement(1983..>2273)
                     /locus_tag="VKJ77_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HMC43804.1"
                     /translation="KYGDFFDEKPNVGYETLLYDCMLGDETLFQRADSIETSWAAVDG
                     VLHPEGGPLPVHGYTAGSAGPKEADELLKADGRSWRPLADEHTQKPDHDDKN"
BASE COUNT          387 a          771 c          642 g          473 t
ORIGIN      
        1 caacttccgg cacaaagacg agcgcgcaac cggcggcggt cagcgtccgc aaatgcgccg
       61 ccgctagacg gaaggtctgt cgcggcgcgc cgttaaagcg agtcccgcac actcagtcga
      121 gagaaggcaa agtcggaaag caaagcttcg tcggcgccgc cgctggatgc tgccagtcag
      181 catcgcatgg cgccgatgtc gctctctgtc ttacgcgcat tcaacctgca ccatcatttt
      241 cccttccggg ccgccagcaa cgcgttgagg cccgcggcaa agccgtcttc atcgttcgtg
      301 gccgatacaa acgtcgcgtg cgattgaacg tctgctggcg cctgacccat cacaatggaa
      361 acacccgcca catcgaacat ggcgacgtcg ttgcccatgt cccccagcac cgccacgttt
      421 tccagtgcaa cgcccgccag ccgcgccaat tcgcgcacgc cctcaccttt gttcgcgagc
      481 ggatgcgtga tgtcgaggta ataggcttgt gagcgcatcg ccacggcgcg gcctttgagc
      541 gtgtcctgga actcggcctc cttgcgctgg agcagcgccg cgtcttttgt cgacgcgacg
      601 atcttttcga tcgagtccag gtcgatatcc tcgaaacgct tgaccaccac cgcgtcgtat
      661 cccacggtcc ggcgctccag cggcacgtat tcaccgccgg gattcgtgat gtaccactgg
      721 tcgtcgatga acacccacgc gtccactccg tcgcgctcca ggctttccag cgccgtttgc
      781 gcggcgtcgc gcggcaacca gtgagcgctc agggtcttcc agccggcggg atcgacgagt
      841 ttgccaccgt tgaaagcggc aaacggcgac tggatcccaa gcgtttccac gatcgaatgc
      901 atgcccttgc ccggccggct gctcgccacc gtgaagcgga cgcccgcggc agtgagattg
      961 cgcacggctt ccttcgcggg ctcaccaagc gatttgtccg tgtagagcaa ggtgccatcg
     1021 caatccgaaa tcacgagctc gaccttcgcc agcgccgcca gcgcctgctc cgggtcgcca
     1081 cgaccgggac cgagcttcag accggtagcg ccaatggatg tcattcaaac gctccagccg
     1141 gcaattgccg cgtctcgcgc actgaacgcg ggtgccagag ccgcgcgccg ccttcaatgc
     1201 ccgcctcgtt cgagaccact ttcacgttat ccggcaagtc gaaattgaga ttggctgcgt
     1261 tgccgcctcc aatccacaga cggtcgtagt tcaccagcga actcaggatg ccgatgatct
     1321 tctccacccg gcgattccag cgcttgttgc ccgccttgtc gcgtgccgca ttgccgatat
     1381 attcgtcgta cgtcttgttt ttgctcaccg gatgatgcgc cagctcgaga tgcggcatga
     1441 gttcaccatc gcggaaaagc gcagtgcccg cgcccgtgcc aagcgtcagt acgaactcga
     1501 tgcctttccc ttcgatggcg gcaagcccct gcatttcggc gtcgttgata atgcgcaccg
     1561 gcaggttccc caggtgctcg gccagcatct gcgcgagggg aatgttgcgc cagaattcgt
     1621 tgccgaggtt tggcgcggtc agcacgtggt tgtcccgcac aacgcccggg aaaccaattg
     1681 agatctgtgt ggcgggcagc ggcgtcaaca gcggcccgac cagttccacc agcttctgca
     1741 ccatcacatc cggcggacac ggatgcggcg tagccacctt gacccgctcg gtttccatct
     1801 tcccgtgggc gtcgataatc gcggccttca ggcccgtccc gccaacatcg atggcgagaa
     1861 tccgttcttt cgccctcgag cgtttggtcg tcttacctgt ggctgtctta accgcggtcg
     1921 ttttgcttgc cgcggttttc ttcactgctg ccttgcgtgc tgctgtcccc atactgttct
     1981 cctcagttct tgtcgtcgtg atcgggtttt tgcgtgtgtt cgtccgccag cgggcgccag
     2041 gagcggccgt cggccttcaa cagctcgtcg gcttccttcg gtcccgcact gcccgcagtg
     2101 tagccatgta ccggcaacgg cccgccttca ggatgcaaca caccgtcaac cgctgcccag
     2161 cttgtttcaa tgctgtctgc gcgctggaac agcgtctcgt cgccgagcat acagtcgtac
     2221 agcagcgttt cgtaacccac gttcggcttc tcgtcgaaga aatcgccata ttt
//
LOCUS       DATGBK010000040         2429 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_162453, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000040 DATGBK010000000
VERSION     DATGBK010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162453"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1414)
                     /locus_tag="VKJ77_00600"
     CDS             complement(<1..1414)
                     /locus_tag="VKJ77_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3416 domain-containing protein"
                     /protein_id="HMC43805.1"
                     /translation="MEHHHMLQAYAPRIYFIDPLLVGPLPAWSAHFEHAAALGFDHVL
                     IGAPFQPGSNGHRQAVADHHKLHSIFETDAPASEGLRVLANQAGKHGLSVLVDITLDQ
                     VSAEGGLFRDNRHWFHPFEAAEARLDPRHAPHEESAAHANFGDGEAAQALTEWWAREL
                     MLLADAGIGGFRFEAPHKVPAHVWRRLGAAVRERHPQTKWLAWTVGISRQDLAALADA
                     GFDSVFSSSRWWDYQGNWLFDEHAALFRIAPPIAFPEEPYGSRLLHDLPDTSDSSLVE
                     RAYRRALYTAAGIGTGLLVPMCFEYGVTQPLTYNHGSAEEFRRAKEGARFNVSAEVAH
                     ANALQRNSAALASIGELRALTGAGTPYAAILRGSGPDLRVAAEAALIVLNPDLTTPVY
                     VDTRHLLDGAPGNFTRFRAIDENTSDTSLPLEPFLLQPGEVHLLRGTSEPPILLAQPQ
                     VKRGAKAADKKSLNEALLAPR"
     gene            complement(1822..>2429)
                     /locus_tag="VKJ77_00605"
     CDS             complement(1822..>2429)
                     /locus_tag="VKJ77_00605"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC43806.1"
                     /translation="RLAQTWPDRVGVYIGYDERRAHVLHAGADILLHGSRFEPCGLTQ
                     IYAMRYGTLPVASRVGGLADTIVDAEAADTAGHQTGFQASPLGGFEGATSSRPATGFL
                     FDGDRVQDVIAAATRAIDAFMRPQQWRTLQRNAMARDYGWNHAVAKYIQLYAGLTDAR
                     PAKAPLRARRVPVKVRAVPVIAVAEADRREAEQTQFVARSA"
BASE COUNT          427 a          758 c          808 g          436 t
ORIGIN      
        1 cccgcggtgc gagcagcgct tcgttcaagg acttcttgtc ggccgccttg gcgccgcgct
       61 tgacctgcgg ctgggcgagc aggatcggcg gttccgaggt tccgcgcaac agatgcactt
      121 caccgggctg caacaggaaa ggctcaagcg gcagcgatgt gtccgatgtg ttttcgtcga
      181 tagcccgaaa ccgcgtgaag ttgcctggtg cgccgtccag cagatgcctc gtatcgacat
      241 aaaccggcgt ggtgaggtcc gggttcagca cgatcagcgc tgcctcggcc gcgactcgca
      301 ggtccgggcc gctgccgcgc agaatggctg catacggtgt gcccgcgccg gtcagcgcac
      361 gcaactcgcc gatgctcgcc agcgccgcgg agttgcgttg tagcgcgttg gcatgcgcca
      421 cttccgccga tacgttaaag cgcgcgcctt ccttggcgcg ccggaactct tccgcgctgc
      481 cgtggttgta ggtgagcggc tgcgtgacgc cgtattcgaa gcacatgggc acgagcaggc
      541 cggtgcctat gcccgccgcc gtgtacaacg cgcgccggta ggcgcgctcg accagcgacg
      601 agtcgctggt gtccggcagg tcgtgcagca ggcgcgagcc gtagggctct tccggaaacg
      661 cgatgggcgg cgcgatgcga aacagcgcgg cgtgttcgtc gaagagccag ttgccctgat
      721 agtcccacca tcgcgacgat gaaaacaccg aatcgaaacc ggcatcggcg agagcggcga
      781 ggtcctgacg gctgatgccg accgtccatg ccagccattt cgtctgcgga tgacgttcgc
      841 gaacggctgc accgagcctg cgccacacgt gcgccggcac cttgtgcggc gcctcgaagc
      901 gaaagccgcc aatgccggca tcggccagca gcatcaactc gcgcgcccac cattcggtga
      961 gcgcctgcgc tgcttcgcca tcgccgaaat tcgcatgggc ggcgctttct tcatgcggcg
     1021 cgtgacgcgg atcgagccgg gcttcagccg cttcaaacgg atggaaccag tgccggttgt
     1081 cccggaacaa gccgccttcg gcgctgacct ggtcgagggt gatatcgacc agcacgctca
     1141 ggccgtgctt gcccgcctgg tttgcaagca cacgcagacc ttcgctcgcg ggcgcgtcgg
     1201 tttcgaatat ggaatggagt ttgtgatgat cggccacggc ctgtcgatgg ccgttgctgc
     1261 ccggctggaa cggtgcgccg atcaggacgt gatcgaagcc cagcgcggcg gcatgttcaa
     1321 agtgtgcgga ccatgcaggc aatggtccga cgagaagcgg gtcgatgaaa tagattcttg
     1381 gtgcatacgc ttgaagcatg tgatggtgtt ccatcggtcg tcttttccag ttcgtcctgc
     1441 tatggcgtgg atgcgggaaa acgcgatcgc gctcaaccag gcaataaacc aaaccgcaga
     1501 gaacggatac ggcagacgag cctcagacag tcatcaaagc accaattccg gggtgactgc
     1561 ggtgcgtatc gacgtcagac ctcaagtcat cgggcgatac gccgttcggt gcggcgccag
     1621 ggtcgcttga gggacacagc acgtagcgtg ccgcgcctct ttaacgtttc ctggcgtatg
     1681 tcggagcctg agagtagtca atggttcgcg acccgcatgc gggttcaggt cagacgacat
     1741 ccgctcgcgc tgcactgcaa tttagtgcgg tgggagcggc caaccgtgta accgtaccat
     1801 cgaaaagggg tgcgtggagc gtcaggcgct gcgtgcgacg aattgtgtct gttccgcttc
     1861 gcgacgatct gcttcggcca ccgcaatgac cggcacggcc cggaccttga ccggcacgcg
     1921 gcgtgcgcgc aacggtgctt tggctggacg cgcatcggtg agacccgcgt atagctggat
     1981 atatttcgcg accgcatggt tccagccgta atcgcgtgcc atcgcattgc gttgaagcgt
     2041 gcgccattgt tgcggacgca tgaaagcgtc gatggcgcgc gtggcggcgg cgatcacatc
     2101 ctggacgcgg tcgccgtcga agaggaagcc ggtcgccggg cgcgaggacg ttgcgccctc
     2161 gaagccgccg agcggagatg cctggaaacc cgtctgatgc cctgcagtgt cggctgcttc
     2221 agcgtcgacg atcgtgtccg ccagcccgcc cacgcgcgat gccacgggca acgtgccgta
     2281 acgcatggcg tagatttgcg tgaggccgca cggctcgaag cggctgccgt gcagcaggat
     2341 gtccgcaccg gcatgcagca catgcgcgcg gcgctcgtcg taacctatat agacacccac
     2401 ccgatccggc caggtctgcg ccagccgct
//
LOCUS       DATGBK010000041         1899 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_23647, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000041 DATGBK010000000
VERSION     DATGBK010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23647"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..412
                     /locus_tag="VKJ77_00610"
     CDS             <1..412
                     /locus_tag="VKJ77_00610"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006762488.1"
                     /note="catalyzes the formation of arginine from
                     (N-L-arginino)succinate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HMC43807.1"
                     /translation="EPLFDTVDTVSDTLRIFAEMAAGITVKPEAMRAAALQGFSTATD
                     LADYLVKRGLPFRDAHEAVALAVRICVDRGCDLADLTLDEMRAELPNVARLIGDDVFE
                     YLTLEGSVASRNHAGGTAPEQVRAAAKAARAALG"
     gene            545..1486
                     /locus_tag="VKJ77_00615"
     CDS             545..1486
                     /locus_tag="VKJ77_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005254 - chloride channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bestrophin family ion channel"
                     /protein_id="HMC43808.1"
                     /translation="MIIRPKLNWFRMLFVWRGSVLPQLLPRLALIFVLSVAAIVMHDH
                     VRNYPVGLGTPPFALVGIALAVFLGFRNSASYERWWEGRKLWGSLLIHGRSIARQALT
                     LPRGVKTEDTREFIAGIGALGHALRHEMRRTNPLPDLATRLPSTLYQRVVQAQYRSSL
                     ILQWLGEWVSTRAREGALDGYGVLAFEQNLNELSGVIGGCERLASTPLPFSYSVMIHR
                     TVYLFCVMLPFGLVDGAGLLTPLFALLVAYAFMSLEAIAAQIEDPFGLEENDLALTAL
                     CDSLENALHDMAADPAFTRPPKALPEPGVAERRFIVT"
     gene            complement(1571..>1899)
                     /locus_tag="VKJ77_00620"
     CDS             complement(1571..>1899)
                     /locus_tag="VKJ77_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lysine decarboxylase"
                     /protein_id="HMC43809.1"
                     /translation="TTEMYLSSMEPAMKPSEAYAKLVHREIDRVPIDELEGRVTSILL
                     TPYPPGIPLLIPGERFNKTIVDYLRFAREFNERFPGFHTDIHGLVGEMINGRIEYFVD
                     CVAVER"
BASE COUNT          353 a          583 c          577 g          386 t
ORIGIN      
        1 ggaaccgctg ttcgataccg tcgataccgt ctccgatacc ctgcgcatct tcgccgaaat
       61 ggcagcgggc atcacggtga aaccggaagc catgcgcgca gcggcgttgc aaggtttttc
      121 gacggcgaca gatctcgcgg actatctggt gaaacgcggc ctgccgttcc gcgatgcgca
      181 tgaagcggta gcgctggccg tgcggatctg cgtggaccgc ggctgcgatc tggccgatct
      241 gacgcttgat gaaatgcgcg cggaattgcc gaacgtggca cgtttgattg gcgacgatgt
      301 gttcgaatac ctcacgctgg aaggctcggt cgccagccgg aatcacgcgg gtggaaccgc
      361 gccggagcag gttcgggcgg cggcgaaggc ggctcgggcg gcgttggggt aaataggcga
      421 ccggctaagc ccagcgcgag accgatcgta gctaatttgg ctacgatcgt agccgatctg
      481 gctacagtcg cgcgtggtga ctgcgcagag gcatgcattc aactccgttg tttccggttc
      541 gcccatgatc atccgtccca aactcaactg gttccgcatg ctgttcgtct ggcgcggttc
      601 cgtgctgccg cagctgttgc cgcgcctcgc attgatcttc gtgttgtcag tcgcagcgat
      661 cgtgatgcac gaccacgtgc ggaattatcc ggtcgggctc ggcacgccac cgttcgcgct
      721 ggtcggcatc gcgctcgccg tgttcctcgg ctttcgcaat agcgcgagtt atgagcgctg
      781 gtgggagggc cgcaagctgt ggggttcgct gttgatccac ggccgctcga tcgcacggca
      841 agcgctgaca ttgccgcgcg gcgtaaagac cgaagacacg cgcgagttca tcgccggaat
      901 cggcgcgctg ggtcacgcgc tgcgccacga aatgcgccgc accaatcccc tccccgatct
      961 cgccacgcgc cttccttcca cgctttatca gcgtgtcgtc caagcgcaat accgctcgtc
     1021 cctgatcctg caatggctcg gcgaatgggt aagcacacgc gctcgcgaag gcgcactcga
     1081 cggctacggc gtgctcgcat tcgagcaaaa tctgaacgag ttgtcagggg tgatcggggg
     1141 ctgcgaacgg ctggcatcga cacctctgcc gttctcgtac tcggtgatga tccaccggac
     1201 cgtatatctg ttctgcgtga tgctgccgtt cgggcttgtc gatggagcgg gcttgctcac
     1261 acccttgttc gcgctgctgg tcgcgtacgc gttcatgtcg cttgaggcaa tcgcggcgca
     1321 gatcgaagat ccgttcggtc tggaagaaaa tgacctggcg ttgaccgcgc tatgcgactc
     1381 gctggaaaac gcgctccacg atatggccgc cgatcccgcc ttcacgcgac cacccaaggc
     1441 attgccggaa ccgggcgtgg cagagcgccg gtttattgtt acctaagcgc cggagcaaac
     1501 cgaacaccac ggaatgacga aggcccgctg tggcgggcct tcgtcattcc tacattctta
     1561 caccgtcaca tcatcgctca actgcgacgc aatcgacgaa atactcgata cgcccattga
     1621 tcatctctcc gaccaacccg tggatatccg tatggaagcc cgggaagcgt tcgttgaact
     1681 cacgtgcgaa acgcaaataa tcgacgatcg tcttgttgaa ccgctcgccc ggaatcagca
     1741 acggaatgcc cggcggatac ggcgtcagca agatgctggt cacacgccct tcgagttcat
     1801 cgataggcac gcgatcaatc tcgcgatgca ccagctttgc atacgcttcg gacggcttca
     1861 tggccggttc catgctggag agatacatct cggtagtca
//
LOCUS       DATGBK010000042         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_46798, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000042 DATGBK010000000
VERSION     DATGBK010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46798"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VKJ77_00625"
     CDS             <1..228
                     /locus_tag="VKJ77_00625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43810.1"
                     /translation="RAESCFKKSIDLAHHQGALFWELRAATSLARLRAAQRRYVEARS
                     VLKPVLDRFSEGFGMADLRSATAMLESLPIE"
     gene            complement(296..619)
                     /locus_tag="VKJ77_00630"
                     /pseudo
     CDS             complement(296..619)
                     /locus_tag="VKJ77_00630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007878448.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
     gene            complement(1053..>1518)
                     /locus_tag="VKJ77_00635"
     CDS             complement(1053..>1518)
                     /locus_tag="VKJ77_00635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017232527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC43811.1"
                     /translation="VIGEAGNDPKVKRLVYVDAFAPDAGESAGTLFSNFKSAPLRAEL
                     RPDTEGFLKLTRKGVFSLFAQDLNEGEKAVIYATQGPINGTALGGTLTNAAWRSRPTF
                     YLIGDQDHAIPRAEQERMAARMDATIGHVDSSHVPMLSQPQAVASFILKAAS"
BASE COUNT          289 a          455 c          482 g          292 t
ORIGIN      
        1 cgggcagaga gttgcttcaa aaaatcaatc gatctggcgc accatcaagg tgcgctgttc
       61 tgggagttgc gtgcagccac aagtctggcc cgtcttcgag cggcgcaacg gcgctacgtt
      121 gaggccagat cggtcttgaa accggtgctt gaccgcttca gcgagggatt tggaatggcg
      181 gacctgcgtt cagcaacggc aatgctggaa tcgcttccga tcgaataact atatctcatc
      241 gcgccctggt tgaacggcgg tcgcggctgc cgcgggatga gacgatgact tcatctcact
      301 tcttcgggaa tagccgcgac ggatcgaact ccgcctctgg gatgaagccg tcgcgattgg
      361 gcattctgac ctgtggcagc gagactttat cgagcttgcc gtcgatcggg atgactgcgt
      421 tgaggctgag caggtcggcc gtgacggcgt aagtatcgtc ggcgctcaac gatcccggcg
      481 agggatacgg catggcacgg cggatgtagt cgaacaaggt cgtcgcgtaa ggccaaaaac
      541 taccgatggt cttaactggc gcattcgaaa ccagcgtgcc ctggccaccg accaagcgat
      601 ccttgatgcc gccttcgccg tggcaggccg cgcggggcag tgatgtcaaa cgacgacgaa
      661 aagcagcctc ttcagactaa agatcgtcgc ccgcgctgtc cagcctgctc cgcatacccg
      721 cgcctttcgc aacgttttct caatacccgc gatggcaaga cagcctgttc acatgcgagt
      781 gcggcgagcg cgtgtgggcc gattaaggcc gcctcagtgg gcggcctcct gccgcgtcac
      841 gaagttctgc ggagcacgcc agcggtcgcg gctcagcatt gcggatcgat aggagcaccg
      901 ttgagcagct cagcgcctaa ctctccgttg cctgaaccag ccgatagacg acgctgagat
      961 gcgcgttgtg ccggtgccag aaactgtcgt cgaaacaggt cgctaagcgc gctggctgag
     1021 gcgccatccg cgcctggccg acaaggattc tgtcaactag ccgccttcag gatgaagctc
     1081 gctaccgcct gaggctggga cagcatcggg acgtgactgg agtccacatg gccgatggtg
     1141 gcgtccatcc gcgcggccat ccgctcctgc tccgcgcgcg gaatggcgtg gtcctgatcg
     1201 ccgatcagat agaaagtagg ccggcttcgc cacgccgcgt tcgtgagcgt gccgccgagg
     1261 gcagtgccgt tgatcgggcc ttgcgtggca tagatgaccg ccttttcgcc ttcgttgaga
     1321 tcctgcgcga acaggctgaa gacgcctttg cgcgtcagct ttaggaaccc ctccgtgtcg
     1381 ggacgcagct cagcgcggag cggagcagac ttgaagttcg agaagagcgt cccggcggac
     1441 tcgccggcat ccggcgcaaa ggcatcgaca tagacgagcc gctttacttt ggggtcgtta
     1501 cccgcttcgc cgattacg
//
LOCUS       DATGBK010000043         1503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_278127, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000043 DATGBK010000000
VERSION     DATGBK010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278127"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1043)
                     /locus_tag="VKJ77_00640"
     CDS             complement(<1..1043)
                     /locus_tag="VKJ77_00640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43812.1"
                     /translation="MTHALRFHRTAAAFIAAAFLTVPSAAPARPLATADLAHITGISS
                     PHVSPDGKTVAVIVSRINFADNKSERDLELIDIATHARRTLTYHRTGLGDLAWSPSGD
                     RLAFTANEGTGDDAKSQVFVMPMNGGDARPVTAAPEGVDQYAWRPDGAAIAYAGEDAK
                     PKLKGADRYRDAFEVGNAGITARGAKRPIHLWLIATSGGTARKLTNGAQSVATGEAQS
                     TLSWSHDGKSLAFLLSPNAVLNDVIRAHAVTLDVASGKITAVSGNAGYESDPLYAPAA
                     NNVAYIHSQGDNQITLAEAFVTTPGAGAGTAVSHAYDRAVHAAAWLPDGTGLLFTCND
                     GTNAALVRAPLTGT"
     gene            complement(1045..>1503)
                     /locus_tag="VKJ77_00645"
     CDS             complement(1045..>1503)
                     /locus_tag="VKJ77_00645"
                     /inference="COORDINATES: protein motif:HMM:NF014818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythrose-4-phosphate dehydrogenase"
                     /protein_id="HMC43813.1"
                     /translation="QNILDAPHKDRRRSRNAATNIIPTSTGAAKALYLTIPEVKGTFD
                     GFSLRVPTPTVSMVYLVAVVKKPTTKAELNAILKKAADGPMRGLVQYTEEELVSSDFK
                     QNPHSSIIDGKLTGANGDLIQIAAWYDNEWGYSCRLADVANMILTKMSAA"
BASE COUNT          256 a          437 c          496 g          314 t
ORIGIN      
        1 gttcccgtca acggcgcgcg aacgagcgcg gcattcgtgc cgtcattgca tgtaaagagc
       61 agtcccgttc cgtcgggcag ccacgcggcc gcgtgaacgg cgcggtcgta tgcgtgcgag
      121 accgcagttc ccgcaccggc gccgggcgtg gtgacgaagg cttcggctag cgtgatttga
      181 ttgtcgcctt gggagtgaat gtatgcaacg ttgtttgcgg cgggtgcgta caacggatcg
      241 ctttcatagc cggcattacc ggagacggcg gtgatcttgc cgctcgccac gtccagcgtc
      301 accgcatgcg cgcggatgac atcgttgagc acggcgttag gcgatagcag aaacgcaagc
      361 gatttgccgt cgtgcgacca cgacagcgtt gactgcgctt cgcccgtcgc cacgctttgc
      421 gcgccgttcg tcagtttgcg ggcggtgccg ccgctcgttg cgatcagcca aaggtggatg
      481 ggccgtttgg cgccgcgcgc ggtaatgccg gcattgccga cctcgaacgc atcgcgatag
      541 cgatcggcac ctttgagttt cggttttgca tcttcgccgg cgtacgcgat tgccgcgccg
      601 tcgggacgcc aggcgtattg atcgacgcct tcgggggccg cggttaccgg ccgagcatcg
      661 ccgccgttca tcggcattac gaaaacttgc gactttgcat cgtcgcccgt gccctcgttc
      721 gccgtgaacg ctaggcgatc gccgcttggc gaccaggcaa gatcgcctaa ccccgtccga
      781 tgatacgtaa gcgtgcgtcg cgcgtgcgtg gcaatatcga tcagctcgag atcgcgttcg
      841 ctcttattgt ccgcaaagtt aatgcgggag acgatgaccg caacggtttt cccatcgggc
      901 gaaacgtgcg gtgaagaaat gcctgtgatg tgcgcgaggt cggcggtggc aagcgggcgg
      961 gcgggcgcgg cgctgggcac agtgagaaac gccgccgcga tgaacgcggc ggcggtgcgg
     1021 tgaaagcgaa gagcgtgcgt cacgttatgc ggcggacatc ttcgtaagga tcatgttcgc
     1081 gacatccgcc aggcggcacg agtagcccca ttcgttgtcg taccacgcgg cgatctgaat
     1141 gagatcgccg ttcgcgccgg tgagcttccc gtcgatgata gagctgtgcg gattttgttt
     1201 gaagtcgctg gacacgagct cttcctcggt gtactgcacc agtccgcgca ttgggccgtc
     1261 cgccgccttt ttaagaatgg cgttaagctc ggctttggtc gtcggctttt tcacgaccgc
     1321 gacgagatac accatcgaaa cggtcggcgt cggaacgcgc agcgaaaaac cgtcaaacgt
     1381 tcccttcacc tcggggatcg taagatacaa tgctttggct gcacccgttg acgtcgggat
     1441 gatgttcgtt gcggcattgc gcgagcgccg gcgatctttg tgcggcgcgt cgagaatatt
     1501 ttg
//
LOCUS       DATGBK010000044         2625 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_637, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000044 DATGBK010000000
VERSION     DATGBK010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2625
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_637"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            35..655
                     /locus_tag="VKJ77_00650"
     CDS             35..655
                     /locus_tag="VKJ77_00650"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HMC43814.1"
                     /translation="MSAPEQSPTPPTPPTTASAWIEQWSHLVEQGGAVLDVASGNGRH
                     ARHFALRGHPVLALDRDEIALANLAAVQHVTTRCADLENASWPLQDDEKFAAVVVTNY
                     LHRPLFPYLFDALAPGGVLLYETFAAGNERFGKPSNPDFLLNPGELLDAVRGRLRVIA
                     YQDGFINVPRASCVQRIVATAPPRPTPTGLTERNNASDPVRYVLQG"
     gene            698..1603
                     /gene="dapA"
                     /locus_tag="VKJ77_00655"
     CDS             698..1603
                     /gene="dapA"
                     /locus_tag="VKJ77_00655"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006751602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HMC43815.1"
                     /translation="MTNGTHGGIQIRGSIPAIVTPMHEDGSLDLPAFRKLIDWHAEEG
                     SNGLVVVGTSGESATLSVDEHILMVKTAVEHTAKRFPIIAGAGGNSTSEAVELAKAAK
                     EVGADATLQVVPYYNKPTQEGMYQHFRKIAESVDLPVILYNVPGRTVADMNHDTVLRL
                     ADVPGIVGVKEATGNIDRAANLIKYAPAHFAIYSGDDPTAIALMLLGGHGNISVTANV
                     APRAMSELCRAALAGDAITARKIHLSLLSLHKQMFCESNPIPAKWALAALGRMESGIR
                     LPLTPLAARYHDVVRDALRETGLLA"
     gene            1767..>2625
                     /gene="bamC"
                     /locus_tag="VKJ77_00660"
     CDS             1767..>2625
                     /gene="bamC"
                     /locus_tag="VKJ77_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009904698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HMC43816.1"
                     /translation="MKRSALFNHARTLSVLSLGIGTLISLAGCDTLNDWLAPDRVNYK
                     GAETAPTLTVPSDLSTADISQRYAAPPKLNTLGGAAPRSLTPAGNATVGVPTPQDPFG
                     MHVERDGDRRWLVVDGRSPDQLWPQLQEFWEENGFTLKTDAAATGIMTTDWAENRANI
                     PDDWFRKSIGKLVDFAYSSGTRDQFRTLVERGSSGSTDISISHSAMEEMLTGQDKTSS
                     KWVERPRNPALEAAFLAKLMEKFGLTDAQAKQLLTDARPATATATVDPTGGSSTLDLS
                     EPFDSAWLRV"
BASE COUNT          519 a          834 c          783 g          489 t
ORIGIN      
        1 tctctcgtac aactgatgta agttatgacg cacgatgtca gcgcctgaac agtcacccac
       61 gccgcccact ccaccgacca ccgccagtgc atggatcgaa caatggtcgc atctggtgga
      121 gcagggcggc gcggtgctcg acgtcgcgtc gggcaatggc cgccatgcgc gtcatttcgc
      181 gttgcgcggg catccggtgc tggcgttgga tcgcgatgaa atcgcattgg cgaacctcgc
      241 cgccgtgcag catgtcacca cgcgttgcgc cgatctggaa aacgcaagct ggccgctgca
      301 ggacgacgag aaattcgccg cggtcgtggt gacgaattac ctccaccggc ccttgttccc
      361 ctatttgttc gatgccctcg caccgggtgg cgtgctgctg tacgagacct tcgcggcggg
      421 caacgaacgt tttggcaagc cgtcgaatcc ggacttcctg ctcaatcccg gcgagttgct
      481 cgacgccgtg cgggggcggt tgcgggtcat cgcttatcag gatggtttta tcaacgtgcc
      541 gcgcgcatcc tgcgtacagc gcatcgtcgc taccgcacca ccgcggccca ctccaacagg
      601 ccttacggaa cgtaacaatg cgtcagatcc cgttcgttac gtactgcagg gctaatccgc
      661 tacaatcgcg gtttaccgac caatttcata gcgtttcatg acaaacggaa cacacggcgg
      721 catccagatc cgcggcagca ttcctgccat cgtcaccccg atgcacgagg acggtagtct
      781 cgatctgccg gcgtttcgaa aactgatcga ctggcatgcg gaagagggct cgaacggcct
      841 cgtcgtggtc ggcaccagcg gtgaatcggc cacgctgtca gtggacgaac acatcctgat
      901 ggtgaaaacc gccgtcgaac acacggccaa gcgctttccg atcatcgccg gcgcgggcgg
      961 caactccacg tccgaagcag tcgagctggc aaaagccgcg aaggaagtcg gcgccgacgc
     1021 cacgctgcaa gtagttcctt actacaacaa gccgacgcaa gaaggcatgt accagcactt
     1081 ccgcaaaatc gcggaatccg tcgacctgcc cgtcattctg tataacgttc cgggccggac
     1141 cgttgccgac atgaaccacg acaccgtgct gcgtctcgcc gacgtgccgg gcatcgtggg
     1201 cgtgaaagag gcaacgggca atatcgaccg tgcggcaaac ctgatcaagt acgcgccggc
     1261 gcattttgcg atctacagcg gtgacgatcc gaccgcgatt gcattgatgc tgctcggtgg
     1321 tcacggcaat atttcggtga ccgcgaacgt cgcgccgaga gcaatgagcg aactctgccg
     1381 cgcggcgctc gccggcgacg cgatcaccgc acgcaagatt cacctgagct tgctgtcgct
     1441 gcacaagcag atgttttgcg agtcgaatcc gatccccgcg aagtgggcgc ttgccgcgct
     1501 cgggcgcatg gaaagcggga ttcgcctgcc gctgacgccg ctcgccgcgc gctaccacga
     1561 cgtagtgcgc gacgcgttgc gcgaaacagg acttctggcc tgacggccgg cagtggggcg
     1621 catttaaaac atgcgcccca ctgcaatgca gtggtttcgg ccttattacc gtttggccag
     1681 ccagcgagtg tcatcaaccc gtcgttcatc gacccgttcc cggcttagct tccaggcaac
     1741 gcgcattcag catcacgaag gacctcatga aacgttccgc cttattcaat cacgctcgca
     1801 ccctgagcgt gctgtcgctt ggaatcggca cgctgatctc gcttgccggt tgtgacacgt
     1861 tgaacgactg gctcgcgccg gatcgagtca actacaaggg tgctgaaacg gcacctacgc
     1921 tgaccgtgcc ctctgatctg agcaccgcgg acattagcca gcgttatgcc gcaccgccca
     1981 agctgaatac gcttggcggc gctgcgccac gttcgcttac gcccgcaggc aatgcaaccg
     2041 tgggcgtgcc gacgccgcag gacccgttcg gcatgcacgt ggagcgtgac ggcgatcgcc
     2101 gctggctagt cgtcgatggc cgctcccctg accaactctg gccgcagttg caggagttct
     2161 gggaagagaa tggtttcacg ctcaagaccg atgccgctgc caccggcatc atgacgaccg
     2221 actgggctga aaatcgcgcg aacattccgg acgactggtt caggaagagc attggcaagc
     2281 tggtcgactt cgcttattca tcaggtacgc gcgatcagtt ccgtacgctg gttgagcgcg
     2341 gttcgagcgg ttccacggac atctccatca gccacagcgc gatggaagaa atgttgacgg
     2401 gtcaggacaa gacctcgtcg aaatgggtcg agcggccgcg gaaccccgca cttgaagccg
     2461 cgttcctcgc gaagctgatg gagaagttcg gtctcaccga cgcgcaggcc aagcaactgt
     2521 tgaccgatgc acgcccggcg accgcaacgg ccacggtaga tccgacgggt ggttcgtcca
     2581 cgctggatct ctccgagccg ttcgacagcg cctggttgcg tgtag
//
LOCUS       DATGBK010000045         2930 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_116313, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000045 DATGBK010000000
VERSION     DATGBK010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116313"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..314
                     /locus_tag="VKJ77_00665"
     CDS             <1..314
                     /locus_tag="VKJ77_00665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016969212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HMC43817.1"
                     /translation="YAQIAPHLYNGPIGAAASIQLAACTPNFLIQESIGTWDGFHAEI
                     LKTPIQWEDGYIIPSKAPGLGVELNMDVVRAHSPYTGDRLHLQMASKPADVRDCSPAK
                     G"
     gene            330..1994
                     /locus_tag="VKJ77_00670"
     CDS             330..1994
                     /locus_tag="VKJ77_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase N-terminal
                     domain-containing protein"
                     /protein_id="HMC43818.1"
                     /translation="MTYDYIIVGAGSAGCILAERLSASGQYSVLVLEAGGKANSFWFK
                     IPVGFAKTYYDPGCNWMYYTEPEAELSDRKIYAPRGKVQGGSGSINAMIYVRGAPRDF
                     DDWAAAGNAGWSYKDVLPYFRKLETHAAGDTPVHGASGPIHVTSMKRGIHAITRHFLA
                     ACDEMGVPRNDDFNGAKIEGAGVYDVNTHKGQRASSNVAYLEPALKRSNVHIEHHALT
                     SRVLFDGLRAKGVEVSQNGVKKTFHAAREVLLCAGAVDTPKLLQLSGIGPKELLERHG
                     IPVLHALPAVGQNLQDHLCASYYYRANMPTLNGDFGSLLGKLKLGLQYLLTRKGPLAM
                     SVNQAGGFFSTDPASPLANLQLYFNPLSYRIPKSNRSQLTPEPYPGFLLAFNPCRPTS
                     RGSIEIASANANDAALIHANYLTTQKDIDEVIQGSRLIRSIMQAPKLRAVTVEETLPG
                     ESVVPEGDDAAMLQYFRENSGSIYHLCGSCAMGPDPLTAVVDDRLRVHGIEALRIVDA
                     SIFPNVTSGNINAPVMMVAEKAAQMILADAAAPTFVQREALAAASA"
     gene            complement(2033..2857)
                     /locus_tag="VKJ77_00675"
                     /pseudo
     CDS             complement(2033..2857)
                     /locus_tag="VKJ77_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587102.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
BASE COUNT          588 a          907 c          879 g          556 t
ORIGIN      
        1 attacgcaca gatcgccccg catttgtaca acgggcccat tggcgccgcc gcgagcatcc
       61 agctcgccgc ctgcacgcct aatttcctga tccaggaaag cattggcacg tgggacggtt
      121 ttcatgccga aattctcaag acgccgattc aatgggaaga cggttacatc atcccgtcca
      181 aggcgccggg actgggcgtg gaattgaaca tggacgtggt acgtgcccac tccccttaca
      241 ccggcgaccg tctgcatctg cagatggcgt ccaagcctgc cgatgtccgg gattgctctc
      301 cggccaaagg ctgaggccga gtacataaca tgacttacga ctacatcatc gttggcgcgg
      361 gatcggccgg ttgcattctc gccgagagac tgtccgcgtc gggacaatac tccgtgctcg
      421 tgctcgaagc gggcggcaag gccaactcgt tctggttcaa gattccagtc gggttcgcca
      481 agacctacta cgatccgggc tgcaactgga tgtattacac cgagccggaa gcggagttgt
      541 cggaccggaa aatctacgca ccgcgcggca aggtgcaagg cggctcgggc tccatcaacg
      601 cgatgatcta cgtacgcggc gcacctcgcg atttcgacga ctgggcggct gcaggaaacg
      661 ctggctggtc gtataaggat gtactgccgt atttccgcaa gctggaaaca cacgcggccg
      721 gagacactcc ggtgcatggc gcgagcggcc cgatccacgt gacatcgatg aaacgtggta
      781 ttcacgcgat cacgcggcac ttcctcgcag cctgcgacga gatgggcgtg ccccgcaacg
      841 acgacttcaa cggcgcgaag atcgaaggtg ccggcgtcta cgacgtgaac acgcacaagg
      901 gccagcgtgc gtcgagtaac gtggcgtatc tggaaccagc gctgaagcgc tcgaacgtgc
      961 atattgaaca tcacgcactg acttcgcgtg tactgttcga cggactgcgt gccaaggggg
     1021 tcgaggtatc gcagaacggc gtcaagaaga cattccacgc cgcacgcgaa gtgcttttgt
     1081 gtgcgggtgc agtcgatacg ccaaagctgc tgcaactatc gggtatcggc ccgaaggaac
     1141 tgctcgagcg ccacgggatt ccggtcttgc atgcgcttcc cgccgtcggc cagaacctgc
     1201 aggatcatct ctgcgcgagc tactactatc gcgcgaacat gcctacgctg aacggtgact
     1261 tcggttcgct tctcggcaag ctgaaactcg gtctgcagta tctgctgaca cgcaaggggc
     1321 cgcttgcgat gagcgtgaat caggccggtg gattcttcag caccgacccg gccagcccgc
     1381 tcgcgaacct gcagctttac ttcaatccgt tgtcgtatcg gattccgaaa tcgaaccgct
     1441 cgcagctcac acccgagccg tatcccggtt tcctgctcgc gttcaatccg tgccgcccaa
     1501 cgagccgcgg atcgatcgag atcgcgtcgg cgaacgcaaa cgatgctgcg ttgattcacg
     1561 cgaactatct gacgacgcaa aaggatatag acgaagtgat ccagggcagc cggctgatcc
     1621 gctcgatcat gcaggccccg aagttgcgcg cggtcaccgt ggaagaaacg ctgccgggcg
     1681 agtcagtcgt gcccgaaggc gacgatgccg ccatgctgca gtatttccgc gaaaacagcg
     1741 gctcgatcta tcacctgtgc ggatcgtgcg cgatgggccc ggacccgctg accgcggtag
     1801 tggatgaccg tctgcgtgtg catggcatcg aggctttgcg gattgtcgat gcgtccattt
     1861 tcccgaacgt cacgtccggc aatatcaatg cgcccgtgat gatggtggcg gaaaaagccg
     1921 cgcaaatgat tctcgccgat gccgccgcgc ccaccttcgt gcaacgcgaa gcgcttgccg
     1981 ccgcttcggc ctgaagccac tgctggaaaa gccgctgcgt cccgcttgca cgctgctcgg
     2041 gacgcagcac gaaccagtac gactggcgcc cttccacctc cacgtccagc acctgccgca
     2101 attgcccgga cgccaactcc gctgcgatca tgtgacgatc ggcaatggtg atgcccatgc
     2161 catcaatggc ggcttgtatc gataaatcga gcaagtcgaa ttcatggccg ttatccgtgt
     2221 ccacgccttc aatacgcgcg gcgtccagcc agtgttgcca ggtcagatac cgctgatctt
     2281 cgcccgatag aacatgcagc aaggtgaagc ggttcagctc caccggcgta tccacgcctt
     2341 cacgatccag caacgcgggc gacgccaccg caatatgccg ctcgtgcatc agcaaggtac
     2401 tttcaaggtt attccattcg ccatcgccga aacgcaccgc gcagtcgagc cggttcgaat
     2461 ccgtgatgcc atcgtccaca cgcgtggtga tgctcaggtc gagttgcgga aacgcttcgc
     2521 gcaggcgccc gaggcgcggc accagccagc gcgcggcaaa ggtcggcggg acgttgatgc
     2581 gcaagcggtt gacgtcattt ttctggccga tcgcgcggac cgtcaattcg atcttgtcga
     2641 aggattgctg caacgcacgc agcagcacgc gaccgctcgg cgtgaggacc agatgctgat
     2701 gacgacgcga aaataacgtc tcgccaagct gctcctcgag ttgccggacc tgccggctga
     2761 ccgcgctttg cgtgacgttc agcagttcgg ctgcacgggt gaagctgccg gtggtaccgg
     2821 cagcctcgaa ggctttgagc gcattcagcg cgggcatttt acgtttcacg atgatctgat
     2881 cggttcgttg gctcgcgacg tgccggcgtg cggcgagcgg gtgcgcgcga
//
LOCUS       DATGBK010000046         3435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_46859, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000046 DATGBK010000000
VERSION     DATGBK010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3435
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46859"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..135
                     /locus_tag="VKJ77_00680"
     CDS             <1..135
                     /locus_tag="VKJ77_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HMC43819.1"
                     /translation="LDGLNWVGGDVVEVSPPYDPTGNTALVAATLMYEILCLLARRFE
                     "
     gene            complement(143..1450)
                     /locus_tag="VKJ77_00685"
     CDS             complement(143..1450)
                     /locus_tag="VKJ77_00685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43820.1"
                     /translation="MPSTLEPSIGAARRTRTPLNRTQIVGFWGAWAGWTLDGMDSFIY
                     ALVLAPALTELLPKSGYAATPANVGLAGSILFALFLVGWGLSFIWGPLADRFGRTKIL
                     AATIFTFAIFTGLAATSHTVWELGIYRFLAGVGIGGEWALAGTYVAEAWPEDRRKMGA
                     GYLQTGYYAGFFMAAALNYTIGATFGWRAMFLVGIVPVIVSIVVLLRVKETEKWQKVE
                     ATVVKQASSLRSIFSPQYRQRTIVATVLLTVAIIGLWAGAVYEPSAVIQLATKAGMTK
                     ADASRTASIATGLLSIGTIIGCLALPPMAERIGRKLTLAVYFVGMAVSIALAFGWAFY
                     LENGLVPFIALLVVLGFFGGNFALFSLWLPEQFETRVRATAFAFCTSIGRFFGAIVNF
                     GIGAMVLHMKTLGVPIALTAIAFVIGLAVIPFAPETKGQDLPT"
     gene            1640..2380
                     /locus_tag="VKJ77_00690"
     CDS             1640..2380
                     /locus_tag="VKJ77_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC43821.1"
                     /translation="MKSELNPLFREAHFEPRQSTSRYIADALRSAIVEGTLLPGEPLR
                     QDAIAKQFSVSAIPVREALRQLDTEGWVTIEQNRGASVSLQSPDEAHEIYEIRASLES
                     LAIGIAIERHTDATLAEARELLEAAANEQDQALYVVRNEQFHMSLYAPAERPHLMELI
                     GTMHRRGERYLRLKFGMPTFKGQSDAEHEAILDALHARDTEAAQTLVARHLLATGELV
                     YRFLHDAQMQAQATQPKKRRRPSTSRSE"
     gene            2427..>3435
                     /locus_tag="VKJ77_00695"
     CDS             2427..>3435
                     /locus_tag="VKJ77_00695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase subunit alpha"
                     /protein_id="HMC43822.1"
                     /translation="MNPPAQAGTTPAPRQWNTRALEKARRLKGIEGWLDNGVLKAERI
                     VDALEALIQSGDRVALEGNNQKQADFLSRAFAKLDPSRVHDVHLLISSISRPEHLTLF
                     ERGIARKVDFSFAGPQSLRVAQLLEDGQLEIGAIYTYIELYARMFIDLTPQVALVCAV
                     QADRHGNLYTGPNTEDTPTIVEATAFRHGIVVAQVNEIVDELPRVDIPGSWVDVVVQA
                     DRPFAVEPLFTRDPRHIGELQILMAMMTIRGIYERYGVKALNHGIGFDTAAIELLLPT
                     YGAAHGLKGKICTHWALNPHPTLIPAIESGWVESVHCFGSEVGMEDYIEARSDVFFTG
                     RD"
BASE COUNT          753 a         1066 c          995 g          621 t
ORIGIN      
        1 ctggacggtt tgaactgggt tggcggcgac gtagttgaag tgtcgccgcc ttatgacccg
       61 accggcaata ctgcactcgt tgccgccacg ctaatgtatg aaatcctgtg tttgctagcg
      121 cggcgcttcg agtaaaaagg cgttaagtcg ggaggtcctg ccccttcgtt tccggtgcga
      181 acggaatcac cgccagcccg atcacaaagg cgatagcagt cagcgcaatc ggcaccccaa
      241 gcgtcttcat atgcagcacc atcgcgccga tgccgaagtt aacgatcgcc ccgaagaagc
      301 gtcctatcga tgtgcagaac gcgaacgccg tcgctcgcac gcgagtctcg aactgctccg
      361 gcaaccacaa gctgaacaac gcgaagttgc caccgaagaa accgaggacc accagcaacg
      421 cgatgaacgg cacaagtccg ttctccagat aaaacgccca gccgaacgcc agcgcgatag
      481 ataccgccat gcccacgaag tacaccgcca gcgtgagttt gcggccgatg cgctcggcca
      541 tgggcggcaa cgcgagacag ccgatgatcg tgccgatcga cagcagaccc gtcgcaatcg
      601 atgcagtcct ggatgcgtcc gccttcgtca tgccggcctt cgtcgcaagc tgaatgaccg
      661 ccgacggttc atacaccgcg cccgcccaca gcccaataat cgcaaccgtc aacaacacgg
      721 tcgcaacaat agtgcgctgc cggtattgcg gcgagaaaat cgatcgcagc gaacttgcct
      781 gcttgaccac cgtcgcttcg accttctgcc acttctcggt ttctttcacg cgcagcaaca
      841 cgacgatgga gacaatcaca gggacgatgc cgacaaggaa catcgcgcgc cagccgaagg
      901 tcgcgccgat cgtatagtta agtgcggcgg ccatgaagaa gcccgcgtaa taccccgtct
      961 ggagataacc cgcgcccatc ttgcgacgat cttccggcca cgcctccgct acataggtcc
     1021 cagccagcgc ccactccccg ccgatcccca cgcccgcaag aaagcgatag atgcccaact
     1081 cccacaccgt atgtgaagtc gcggcgagtc cggtaaagat cgcgaaggtg aagatggtcg
     1141 cggcgagtat cttggtgcgc ccgaagcggt cagcgagcgg accccagatg aacgacagcc
     1201 cccaacccac gaggaacagc gcgaacagga tcgaccctgc cagaccgaca ttcgcgggcg
     1261 tggccgcata gccggacttc ggcagcagtt cagtgagcgc gggcgccagc accaatgcat
     1321 agatgaacga gtccatgcca tcgagcgtcc agccggccca ggcaccccag aagcctacta
     1381 tctgagttcg gttaaggggc gtacgggtgc gccgggcggc gcctatcgaa ggttccagcg
     1441 tgcttggcat gactgtcttc ctggtaggtg taaacctgta tgagccggat atgaaccacg
     1501 cgctgtgttc tgagatccgg gcatctgtca ttaagcaccg ggtttgcgtc acaaacccca
     1561 aatgtgcatt ttcatatata atatttgaaa acgaggtgtt gaccactccg cacttgtacc
     1621 tagcttcggc aggaaaaaca tgaaaagtga actgaatccc ctgtttcgcg aggcgcactt
     1681 cgagccgcgc caaagcacgt cgcgttatat agcggacgcg ttgcgatcgg cgatcgtcga
     1741 agggacgctg ttgccaggcg agccgctgcg ccaggacgct atcgccaaac agttctccgt
     1801 cagcgcaatt cctgtgcgcg aggcgctcag gcaactggac accgagggct gggtcaccat
     1861 tgaacagaat cgcggtgcat cggtcagcct gcaatcgccc gatgaagccc acgagatcta
     1921 tgagatccgt gcttcactgg aaagtctggc gatcggcatc gcgatcgagc gtcatacaga
     1981 tgcaacgctg gccgaggcgc gcgaattgct ggaggctgcg gccaacgaac aggatcaggc
     2041 gctgtatgta gtacgcaatg aacagttcca tatgagcctg tatgcacctg ctgaacgccc
     2101 tcatctgatg gagttgatcg gcacgatgca tcggcggggg gagcggtatc tgcgtctcaa
     2161 gttcggcatg cctaccttca agggacagtc cgacgccgag cacgaagcca ttctcgacgc
     2221 actgcatgcc cgcgatacag aagccgcgca aacgctggtc gcgcgccatc tgctcgcgac
     2281 cggcgaactg gtttatcgtt ttctccacga cgcgcaaatg caggctcaag ccacgcagcc
     2341 aaagaagcgc cgccgtcctt ccacttcgcg gtcagagtaa acgctgattt cgtttcgctg
     2401 atcctgctca acaccgaggc ccccgcatga atcctcccgc acaagccggc accaccccag
     2461 caccgcgcca gtggaacacg cgtgcactgg aaaaggcccg gcgcctgaag ggtatagaag
     2521 gctggctcga caacggcgtg ctcaaggcag agcgcattgt tgacgccctc gaagcactca
     2581 ttcaatccgg cgatcgtgtc gcgctggagg gcaacaacca gaagcaagcc gacttcctct
     2641 cgcgcgcgtt cgcgaaactc gatccgtcgc gcgtgcatga cgttcatctg ctgatatcca
     2701 gcatcagccg gcccgagcat ctgacgctgt tcgaacgcgg catcgcgcgc aaagtggact
     2761 tctcgtttgc gggaccgcag agcctgcgcg ttgcgcaatt gctcgaagac gggcagctcg
     2821 agattggcgc gatctatacg tatatagaac tatatgcacg catgttcatc gacctgacgc
     2881 cgcaagtcgc gctggtctgc gcggtgcagg cggatcgcca cggcaatttg tatacgggtc
     2941 cgaataccga ggacacgccg accattgtgg aagcgaccgc gttccgtcat ggcatcgtgg
     3001 tggcgcaggt gaacgagatc gtcgatgaac tgccgcgcgt cgatattccc ggctcgtggg
     3061 tcgatgtcgt cgtgcaggcc gaccggccgt ttgccgtcga gccgctgttc acacgcgatc
     3121 cgcgtcatat cggcgagttg cagatcctca tggcgatgat gaccatccgc ggcatctacg
     3181 agcgttatgg cgtgaaggcg ttgaatcacg gcattggctt cgacaccgcc gcgatcgaat
     3241 tgctgctgcc gacctatggc gcagcgcatg ggctgaaggg caagatctgc acgcactggg
     3301 cgctcaatcc gcatcccacg ttgatccccg ccattgagag cggttgggtg gaaagcgtgc
     3361 attgcttcgg cagcgaagtc ggcatggagg attacatcga agcacgctcg gatgtgtttt
     3421 tcaccggccg cgacg
//
LOCUS       DATGBK010000047         1795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_208663, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000047 DATGBK010000000
VERSION     DATGBK010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208663"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..670
                     /locus_tag="VKJ77_00700"
     CDS             <1..670
                     /locus_tag="VKJ77_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018004721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC43823.1"
                     /translation="EEQAASLQQTASSMEQLTATVRQNADNARQASELAIDASATAVR
                     GGTVVGKVVHTMDDIATSSTRIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFA
                     VVAGEVRNLAQRSAGAAKEIKELINASAGKVQAGNVLAGQAGQTMSEVVAAVKRVSDI
                     ISEISAASNEQTGGIEQINRAVAQMDEVTQQNAALVEEAAAAAASLEQQAAQLDVAVA
                     VFRV"
     gene            771..980
                     /locus_tag="VKJ77_00705"
     CDS             771..980
                     /locus_tag="VKJ77_00705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43824.1"
                     /translation="MNYKGYLARVGFDSRDNIFVGHVLGLSEHVSFHGETVPELTEDF
                     HHAIDHYLNDCVRIGCDANISHLQR"
     gene            complement(1007..1432)
                     /locus_tag="VKJ77_00710"
     CDS             complement(1007..1432)
                     /locus_tag="VKJ77_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43825.1"
                     /translation="MKASTTYLYLLRKTPFFTGLDTEQLRWTIGHSREWEAQAGTVVA
                     DCSAVDKSDDFWILLDGRWQVEHDGHTYPAGHADAGKWFSASEAPGNCRLVTTEHSYV
                     MKITRADMNDMLNRGFGFEPHLAQGRAYYRTVFAATATQ"
     gene            complement(1540..>1795)
                     /locus_tag="VKJ77_00715"
     CDS             complement(1540..>1795)
                     /locus_tag="VKJ77_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006158675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HMC43826.1"
                     /translation="RYDGVMDQIGERLTSLTPPDADPKAVADEVVRIVGLAKGTRPMR
                     SVIDFVGDGAAQVLEVSERVRIEFAKRIGMGDLLEAKVSR"
BASE COUNT          390 a          529 c          545 g          331 t
ORIGIN      
        1 ggaagaacag gcggcatcgt tgcagcaaac agcgtcgagc atggagcagt taacagccac
       61 cgttcgtcag aacgccgaca acgcgcggca ggcgagcgag ctggccatcg atgcatcggc
      121 aacagccgtg cgagggggca ctgtcgtggg caaggtcgtt catacgatgg acgacatcgc
      181 gacgagttcg actcggattg cggacatcat cggcgtgatt gaggggatcg cgttccagac
      241 aaacattctc gcgctgaacg cggcggtgga agccgcgcgt gcgggtgaac aagggcgtgg
      301 ttttgcggtg gtcgcgggtg aagtgcgcaa cctcgcgcaa cgcagcgccg gcgccgcgaa
      361 agagatcaag gagttgatca atgcatcggc gggcaaggtg caagccggca atgtgctcgc
      421 gggacaagca ggccagacca tgagcgaagt ggtcgcggcg gtgaagcggg tatcggacat
      481 cattagcgag atcagcgcgg catcgaacga gcagaccggc gggatcgaac agatcaaccg
      541 cgcggtcgcg cagatggacg aggtgacaca gcaaaatgcg gcgctggttg aggaagcagc
      601 tgcggctgcg gcgtcgcttg agcagcaagc ggcgcagttg gatgtcgcgg tggcggtgtt
      661 tcgggtttaa tatctgcatc ggccgcactc gaacaaggat aggcggaagt atcaggtacg
      721 agaagcgcga gcgtcgttaa cgaatttgag gtggaacctt gataaacgcg atgaactata
      781 aggggtatct tgcgcgagtc ggtttcgatt cgcgcgacaa cattttcgtc ggacatgtgc
      841 tcggcctgtc ggagcacgtc agcttccacg gcgagacagt acccgaactg accgaggatt
      901 ttcatcatgc catcgatcac tacctcaacg attgcgtaag aattggttgt gacgcgaaca
      961 tctcacatct gcagcgttga gaaaaaaggt cgcagcttct tgtaggttac tgagttgcag
     1021 tcgccgcaaa caccgtccgg taatacgcac gcccttgcgc caagtgcggc tcaaaaccaa
     1081 atccacggtt cagcatgtcg ttcatatcgg cgcgggtgat tttcatcacg tagctgtgct
     1141 cagtcgtgac caaccggcag ttccccggag cctccgatgc gctgaaccac ttgcccgcat
     1201 cggcatgacc cgcggggtac gtgtggccgt cgtgttccac ttgccagcgg ccatcgagca
     1261 gaatccagaa gtcatcgctc ttatccaccg ctgaacaatc cgcgaccacc gtgcccgctt
     1321 gcgcttccca ctcgcgcgag tgaccgatgg tccagcgcaa ctgttccgta tcaagccccg
     1381 taaaaaacgg cgttttcctg agcagataca aatacgtcgt cgatgctttc atggtcttgc
     1441 cctcctgctg cgcgtagccc agctgagcgc acgcagcgct cagcataaga aggccaagcc
     1501 aggcgccgcg aacgatacgc ccggccctcg tcacgcttgt caccgtgaca ccttcgcttc
     1561 cagcagatcg cccatgccga tacgcttcgc gaattcaatc cgcacccgct ccgatacctc
     1621 cagcacctgc gccgcgccat cgccgacaaa atcgatcacc gagcgcatcg gccgcgtgcc
     1681 tttcgcaagc cctacgatgc gtacgacttc gtccgcgacc gccttgggat cggcatcagg
     1741 cggtgtcaga gaagtcaggc gctcgccaat ctggtccatc acgccgtcgt atcgg
//
LOCUS       DATGBK010000048         2887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_46863, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000048 DATGBK010000000
VERSION     DATGBK010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2887
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46863"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..422)
                     /locus_tag="VKJ77_00720"
     CDS             complement(<1..422)
                     /locus_tag="VKJ77_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HMC43827.1"
                     /translation="MTPDVTSSSKRSATGGASITSGQRFKQLFTRYKLLALLLAVTVI
                     WIFFSFLTDGAFVTPRNLSNLLRQMSITGMLACGMVFVIISGEIDLSVGALLGLLGGV
                     AAILDVSHHWPIQFTVPAVMLLGIAIGMFNGWWSTYVRV"
     gene            complement(419..1975)
                     /gene="xylG"
                     /locus_tag="VKJ77_00725"
     CDS             complement(419..1975)
                     /gene="xylG"
                     /locus_tag="VKJ77_00725"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015601832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015614 - ABC-type D-xylose transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015753 - D-xylose transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HMC43828.1"
                     /translation="MANALLEMHGIVKTFGGVKALDGIDLVVSPGECVGLCGENGAGK
                     STLMKVLSGVYPHGTWEGEIRWEGEPLRASTIRETEDAGIVIIHQELMLVPQLSVAEN
                     IFLGNEITLSGGRMNYAAMYQRADELLRELNISGINVAQPVMNYGGGHQQLIEIAKAL
                     NKRAKLLILDEPSSSLTASEIRILLDIVRDLKKRGVACVYISHKLDEVEAVCDTITVI
                     RDGKHVSTQPMKDLSTDSIIAMMVGREIKNLFPREPHDIGEVIFEARHVTCFDVTNPR
                     RKRVDDVSFSLRKGEILGVAGLVGAGRTELMQAIFGAYPGISEAEVYLNGKRLKIKTP
                     ANAIDAGIGMVPEDRKRHGIVPQLGVGHNITLAVLTRFAKGGRIDSAAELDTIHTEMK
                     RLSVRAATPMLSIASLSGGNQQKAVLTKMLLTDPAILILDEPTRGVDVGAKFEIYKLM
                     FALARRGVSIIVVSSELNEVLGVSDRVLVIGEGQLRGDFINEGLTQEQLLAAAIRATP
                     QTNSFQASVA"
     gene            complement(2065..>2887)
                     /gene="xylF"
                     /locus_tag="VKJ77_00730"
     CDS             complement(2065..>2887)
                     /gene="xylF"
                     /locus_tag="VKJ77_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015614 - ABC-type D-xylose transporter
                     activity [Evidence IEA];
                     GO_function: GO:0033222 - xylose binding [Evidence IEA];
                     GO_process: GO:0015753 - D-xylose transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC43829.1"
                     /translation="VQSADASEERQISQIENLISRGVDVIVIVPFNSKTLGNVVAEAK
                     KAGIKVVSYDRLILDADVDAYISFDNEKVGEMQAQGVFNAQPKGNYFMLGGSPTDNNA
                     KMLREGQMKILKPAIDRGDIKIVGQQWVPEWSAATALRITEDALTANNNKIDAIVASN
                     DGTAGGAIQALAAQHLAGKVPISGQDADLAAVKRVVDGTQTMTVYKPLKLIAGEAAKL
                     AVDLAKGQQPAYNAKYDNGMKQVNTVLLQPTLLTKSNVDTVVKDGFYTQAQLAGN"
BASE COUNT          561 a          896 c          807 g          623 t
ORIGIN      
        1 actcgcacat aagttgacca ccagccgttg aacatcccga tcgcaatgcc gagcaacatc
       61 accgccggta cggtgaactg gatcggccag tgatgcgaga catcgagaat agcggccaca
      121 ccaccgagca aaccaagcaa cgcgccgact gacagatcga tctcgcccga gatgatcacg
      181 aacaccatgc cgcacgcgag catgccggtg atcgacattt gccggagcaa gttcgacaga
      241 ttgcgtggcg tgacaaacgc gccatcggta aggaaggaaa agaagatcca gatgacggtt
      301 accgccagca gcagcgctag caatttgtaa cgcgtgaaaa gctgcttgaa gcgctgcccg
      361 gatgtgatgc tcgcgccgcc ggtggcgctg cgtttgctcg acgaggtgac gtcaggagtc
      421 atgcgacgct cgcttgaaaa gagtttgtct gtggggtcgc gcggatggcc gccgccagga
      481 gttgttcttg cgtgagccct tcattgataa agtcgccgcg cagttggccc tcgccaatca
      541 ccagcacgcg atcgctcacg ccaagcactt cattcagttc cgacgacacc acgatgatcg
      601 acacgccgcg ccgggccagc gcgaacatga gcttgtagat ctcgaacttg gcgcctacgt
      661 cgacgccccg cgtgggttca tcgaggataa gaatggctgg atcggtcaac agcatcttgg
      721 tcagcacggc cttctgctga ttgccgccgg acaagctggc gatagacaac ataggcgtgg
      781 cggcgcgcac ggaaagccgc ttcatttctg tatggatggt atccagctcg gctgcggaat
      841 caatccgccc gcccttcgca aagcgagtca gcacggcaag cgtgatgtta tgtcccacgc
      901 ccagttgcgg gacgatgccg tgacgcttgc ggtcttcagg caccataccg atacccgcat
      961 cgatcgcatt agccggagtc ttgatcttaa ggcgcttgcc gttcagataa acctccgcct
     1021 cgctgatgcc cgggtaagcg ccgaagatcg cctgcatcag ttcggtccgc cctgcgccga
     1081 ccagcccggc aacgccgaga atctcgccct tgcgcagcga aaacgagacg tcgtctacgc
     1141 gcttgcggcg cggattggtc acatcaaaac aggtgacgtg gcgggcctcg aagatcactt
     1201 caccaatgtc atgcggctcg cgcgggaaca ggttcttgat ctcccggccg accatcatcg
     1261 caatgatgct gtccgtgctc agatccttca tgggctgcgt gctgacatgc ttgccatccc
     1321 ggatcacggt gatggtgtcg cagacggctt ccacctcgtc gagcttgtgc gagatgtaca
     1381 cgcacgccac gccgcgcttc ttcaagtcgc gcacgatgtc cagcaagatc cgtatttcac
     1441 tcgcggtcag ggatgacgaa ggttcatcca ggatcagcaa cttcgcgcgc ttgttcaatg
     1501 ccttggcaat ctcgatcagt tgctgatggc cgccgccgta gttcatcacg ggctgagcca
     1561 cattgatgcc actgatgttc agttcgcgca gcaattcgtc ggcgcgctga tacatggccg
     1621 cgtagttcat ccggccgccg cttagcgtga tctcgttgcc gaggaagatg ttctccgcca
     1681 ccgacaactg cggcaccagc atcagttcct ggtggatgat gacaatgccg gcgtcctccg
     1741 tttcgcggat agtcgatgcc cgtaaaggct caccttccca gcggatttct ccttcccacg
     1801 tgccgtgcgg atagacgccg gacagcactt tcatcagtgt cgatttgcct gcgccgtttt
     1861 cgccgcacaa accaacgcat tccccgggtg agaccacgag gtcaatacca tcgagcgcct
     1921 tcacaccgcc aaacgtcttg acgatgccgt gcatttccag cagcgcgttt gccatgcggt
     1981 ttttatcctg gacagtgaat cggcgtgaag gcccctcttg ctcatactcg tcgagccctc
     2041 acgcccggca tgacgcggca gtggttaatt ccctgccaac tgggcctgcg tatagaagcc
     2101 gtccttcacc actgtatcga cattgctctt tgtcaggagc gtcggctgca gcaacacggt
     2161 gttgacctgc ttcatgccgt tgtcatattt agcgttgtag gccggttgct gcccttttgc
     2221 cagatccacc gccagtttcg ccgcttcacc cgcaatcagc ttgagcggtt tatagacggt
     2281 catggtctgc gtgccgtcca ccacacgctt gaccgccgca aggtcagcat cctgcccgga
     2341 gataggcacc ttgcctgcga ggtgttgcgc ggccagcgcc tggatagcgc cgccggccgt
     2401 gccgtcgttg gacgccacaa tggcgtcgat cttgttgttg ttcgcggtca gcgcatcttc
     2461 cgtgatgcgc agtgcggtcg cggcactcca ttcgggcacc cattgctggc cgacaatctt
     2521 gatgtcgcca cgatcaatgg ccggcttcag gatcttcatc tgcccttcac gcagcatctt
     2581 cgcgttgttg tcggtcggtg agccgccgag catgaagtag ttacccttgg gctgcgcatt
     2641 gaacacgcct tgcgcctgca tttcaccgac cttttcgtta tcgaaggaga tgtaggcgtc
     2701 cacatcggca tcgaggatca ggcggtcgta cgacaccacc ttgatgcccg ccttcttcgc
     2761 ttcagctact acattgccga gggttttcga attgaacggc acgatcacga tgacatctac
     2821 gccccgcgag atcaggtttt caatctgcga tatctgccgt tcttcgctgg catcggcgga
     2881 ttgcacg
//
LOCUS       DATGBK010000049         1989 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_139398, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000049 DATGBK010000000
VERSION     DATGBK010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139398"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..566
                     /locus_tag="VKJ77_00735"
     CDS             <1..566
                     /locus_tag="VKJ77_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013236679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC43830.1"
                     /translation="YTAIISTRHRERLLAIVQEAREGGARIIEVNPARERFDENTRKF
                     PPTLVVGAGAGARLMREEIFGPLLPIVEYDGLDQAIAMVNRGDRPLALYWFGRSVVNR
                     DRVLNETVSGGVTINDCLWHLAQEAQPFGGVGPSGMGAYHGEWGFRTFSKEKPVFYQA
                     RLNGTRLFHPPYGRTFDLMLRLIKRIT"
     gene            617..>1989
                     /locus_tag="VKJ77_00740"
     CDS             617..>1989
                     /locus_tag="VKJ77_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012365390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase N-terminal
                     domain-containing protein"
                     /protein_id="HMC43831.1"
                     /translation="MSDVFDFVVIGAGSGGCVVAGRLSEDPAVTVCVLEAGGSGNSAL
                     VKIPAAAVVMLPTKLNNWAFKTVPQAGLNGRKGYQPRGKALGGSSAINAMVYARGHRS
                     DYDHWASLGNEGWSYEDVLPYFLRSEHNERITNEWHGRDGPLWVSDLRTDNPFHARYL
                     EAARQTGLPVTDDFNGAEQEGVGIYQVTQKNGERWSAARAYLLPHMTKRKNLSVETYA
                     HVQRIIFEGTRAVGVEVTVGDGTRIIRARREVILAAGALQTPQLLMLSGVGDTQELGR
                     LGIPVVQHLPGVGKNLQDHPDFIFGYRTRSLDTFGISFRGSARLLREILRFSSSRRGA
                     LTSNFAEGGAFLKTRPDLAMPDVQLHFVVALADNHARTLHLGHGLSCHVCLLRPRSRG
                     EVTLQSRDSYVSPRIDPAFFNDPLDLEGMVEGFKLARRLMQAPALAEWVTEDLFTANV
                     NTDDEIR"
BASE COUNT          381 a          562 c          649 g          397 t
ORIGIN      
        1 actacacggc gatcatcagc acgcggcatc gcgagcggtt gcttgcgata gtgcaggaag
       61 cgcgtgaagg cggagcgcgc attatcgaag tcaatccagc ccgagaacgc ttcgacgaaa
      121 acacgcgcaa atttccaccg acgctggtgg tcggcgcggg cgccggcgcg cgtctgatgc
      181 gcgaggaaat cttcgggccg ctgctgccca ttgtcgaata tgacggactg gaccaggcca
      241 ttgctatggt gaaccggggc gaccggcccc tcgcgcttta ctggttcggc cgcagcgttg
      301 tcaatcgcga ccgcgtgctg aacgaaacag tgtcgggtgg tgtcacgatc aacgactgtc
      361 tgtggcatct ggcgcaggaa gcgcagccgt tcggcggagt tggcccgagc ggcatgggcg
      421 cttatcacgg cgaatggggc ttccgtacct tcagtaaaga gaaacccgtt ttctaccagg
      481 cgcggctgaa tggcacgcgt cttttccatc cgccttatgg caggaccttc gacctgatgc
      541 tgcggctgat caagcgtatt acctaaacaa aacgccagcg gcgtggcatg cgccgactat
      601 ttggcaggag accggaatga gcgacgtatt cgatttcgta gtgatcggtg caggctcggg
      661 tgggtgtgtc gtcgcagggc ggctgagcga agatcctgca gtcacggtct gcgttcttga
      721 agcgggaggg agcggcaaca gcgcactggt gaagattccg gcggccgctg ttgtgatgtt
      781 gccgacaaag ctcaacaact gggcattcaa aaccgtgccg caggcgggcc ttaatggccg
      841 caagggctac cagccgcgcg gcaaggcgtt gggcggatcg tccgctatca atgcaatggt
      901 ctatgcgcgt gggcatcgtt cggactacga tcattgggca tcgttaggca atgaaggctg
      961 gtcgtatgag gatgtgcttc cgtacttcct gcgcagcgag cataacgagc ggatcaccaa
     1021 cgagtggcac ggccgcgatg gaccgctctg ggtcagcgac ttgcgcaccg acaatccgtt
     1081 ccatgcacgg tacctcgagg ccgcgcgcca gaccggatta cccgtgaccg acgacttcaa
     1141 cggcgccgag caggaaggcg tggggatcta tcaggtcacg caaaagaacg gcgagcgatg
     1201 gagtgccgca cgcgcctatt tgctgccgca tatgacgaag cgcaagaacc tctccgtcga
     1261 gacttatgcg cacgtgcagc ggatcatttt cgagggcacg cgtgctgtcg gtgtcgaggt
     1321 aacggtgggg gacgggaccc gcattatccg cgctcgtcgc gaggtgattc tggccgcggg
     1381 cgcgttgcag acaccgcaac tgctgatgtt gtccggtgtg ggcgatacac aggagctcgg
     1441 tcggctcgga attcccgtgg tccagcattt acccggcgtg ggcaagaacc tgcaggatca
     1501 tcctgacttt atcttcgggt atcggactcg cagcctcgac accttcggca tatcgtttcg
     1561 cggcagcgcg cgtttattgc gggagatcct gcgctttagc agttcgcgcc gtggggcgct
     1621 gacgtcgaac ttcgccgaag gcggtgcgtt cctcaagact cggccggacc tggcaatgcc
     1681 cgacgtccag cttcactttg tcgtggcgct ggcggataac cacgcgcgca cgttgcatct
     1741 gggccacggg ttgtcgtgtc acgtatgttt gctgcggcca cgaagccgtg gagaagtgac
     1801 gcttcaaagc agggactcct acgtttcacc ccgtatcgat ccagcgttct tcaacgaccc
     1861 tctcgatctc gagggcatgg tggaggggtt caagctcgcg cgacgcctga tgcaagcgcc
     1921 tgctcttgct gaatgggtca cggaggactt gtttactgcg aacgtgaaca cggacgatga
     1981 gattcgtga
//
LOCUS       DATGBK010000050         4029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_324451, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000050 DATGBK010000000
VERSION     DATGBK010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4029
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324451"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(221..754)
                     /locus_tag="VKJ77_00745"
     CDS             complement(221..754)
                     /locus_tag="VKJ77_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HMC43832.1"
                     /translation="MASVNKVILVGNLGADPETRYLPSGDAVANIRLATTDRFKDKTS
                     GEMKELTEWHRVSFFGRLAEIVNEYLKKGSSVYIEGRIRTRKYTDQAGVEKYATEIVA
                     EQMQMLGGRSGAGGGGGDEGYSSRAPAERSSGGGGASRGGAAAGRPAGGGNAGGASRP
                     SAPAGGGFDEMDDDIPF"
     gene            complement(934..2136)
                     /locus_tag="VKJ77_00750"
     CDS             complement(934..2136)
                     /locus_tag="VKJ77_00750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43833.1"
                     /translation="MSNPSVTSTRLSAPELRATVSLAAIFALRMLGLFMIMPVFSIYA
                     KTIPGGDNVLLVGIALGAYGVTQSLLYIFYGWVSDKLGRKPVIAFGLVVFAIGSFVAA
                     VGHSMTWIIVGRVIQGMGAVSSAVIAFIADLTSEENRTKAMAMVGASIGVSFAVAIVG
                     APIVFEWVGMSGLFTLIGFLSILAVGVVIWVVPDAPKPPVHVKAPFAEVLHNVELLRL
                     NFGVLVLHATQTALFLVVPRILEAGGLPVAAHWKVYLPVMGLAFVMMVPAIIAAEKRG
                     KMKAVMVSAIGLILIGQLLLGAAPHTLWSVAAVLFVYFLGFNVLEASQPSLVSKLAPG
                     TRKGAAAGVYNTTQSIGLAIGGVIGGWLLKVDGQSAVFFACSGLVFAWLIVAANMKPP
                     PQKVRRTA"
     gene            2444..>4029
                     /locus_tag="VKJ77_00755"
     CDS             2444..>4029
                     /locus_tag="VKJ77_00755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HMC43834.1"
                     /translation="MEEIRIRGARTHNLKNINLDLPRHKLIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVT
                     EIHDYLRLLFARVGTPHCPDHHIPLEAQSVSQMVDAALAMPEETKLMILAPVVADRKG
                     EHLELFEAMQAQGFIRFRVRSGGGTANEGVAKIYEIESLPKLKKNDKHTIDVVIDRLK
                     VRPDMKQRLAESFETALRLADGRAIALEMDSEKEHLYSSKFACPICSYSLQELEPRLF
                     SFNNPMGACPECDGLGQITFFDPKRVVAHPSLSLAAGAVKGWDRRNQFYFQMLQSLAS
                     FFEFDIDAAFEDLPENVRKILLFGSGKEVIPFSYINERGRTTVREHAFEGIIPSLERR
                     YKETDSAAVREELAKYQNNQACPACEGTRLRTEARNVKLGTGENARAIYEVSGWPLRE
                     TLGYFHTLRLEGAKGEIADRVIKEIVARLTFLNNVGLDYLSLERSAETLSGGEAQRIR
                     LASQIGSGLTGVMYVLDEPS"
BASE COUNT          864 a         1265 c         1166 g          734 t
ORIGIN      
        1 ttggttttat gtttctcggc catcgcttgc tggcgcgtcg gtacgtggcg cgattgcaac
       61 gcacatcttc ccgatatcac agccgaactg catcggcgcc gacaaggtgc gctgaacgcc
      121 agcgaccggt tgatcgtcgc ctcgatgtgc acacaacgca aaaagcccac aacgaggtgg
      181 gctttttagt caaacgcggc gaaaactgct ttagtcagct ttagaacgga atatcgtcgt
      241 ccatttcgtc gaaaccaccg cctgccggcg cgctcggacg gcttgcgccg ccagcgttac
      301 cgccgcccgc aggacgcccg gccgctgcac cgccccggct agcaccaccg ccgccgctgc
      361 tacgctcggc aggcgcacgg ctgctgtagc cttcatcacc gccaccgccg cctgcaccgc
      421 tgcgtccgcc cagcatttgc atttgttccg cgacaatctc ggtcgcatac ttttccacgc
      481 cggcctgatc ggtgtatttg cgtgtacgga tccggccctc gatatacacc gacgaaccct
      541 tcttcagata ttcgttcacg atctcggcca gccgcccgaa aaacgacacg cggtgccact
      601 ccgtcagctc cttcatctcg ccggacgtct tgtccttgaa gcgatcggtg gtggctaggc
      661 ggatgttggc cacggcgtcg ccgctcggca gataacgggt ttccggatcg gctcccagat
      721 tgccgacgag aatgacttta ttgacggatg ccatgatttc tcctgttgat tcaattcaat
      781 tcaatttgac ctgatgcggt gcgctcgcaa cgcgacacgc ggtggcagtc gacgtgttca
      841 gcaaggcctg caatatctgc aaacctcatg ccccacgctg cggcaagatt tcgccaacac
      901 gccaaaatac gcccgacaaa aaacgacaac cgatcaagcg gtgcgccgga ctttctgcgg
      961 cggcggtttc atgttcgccg ccacgatcag ccatgcaaaa accaaccccg agcacgcgaa
     1021 aaatacagcg ctctgcccgt ctactttcag cagccagccg ccgatcaccc cgcctatggc
     1081 gaggccgatg gactgtgttg tgttgtagac gcctgccgcc gcaccctttc tcgtgccagg
     1141 cgcgagtttg gagacgagcg acggctgcga tgcttccagc acattgaagc ccaggaagta
     1201 cacaaacaaa accgcggcca ctgaccacag ggtatgcgga gcggcgccga gtaacaactg
     1261 gccaatcagg ataagaccta tggcgctgac catcacggcc ttcatttttc cgcgtttttc
     1321 cgcggcaata atggccggca ccatcatgac aaacgccagg cccatcacgg gcaaatagac
     1381 tttccaatgg gccgcgaccg gcaaaccacc cgcctccaga atgcgcggca caaccagaaa
     1441 cagcgcggtt tgcgtggcgt gcaacacgag cacgccgaag ttcaggcgca acaattccac
     1501 gttgtgcagc acttcggcga acggggcttt cacgtgcacg ggcggcttgg gcgcgtccgg
     1561 gacgacccag atcacgacac cgaccgcgag tatcgataaa aacccgatca gcgtaaacag
     1621 gccgctcatg ccaacccact cgaacacaat cggcgcgccg acaatggcca ccgcgaacga
     1681 gacaccgatg ctcgcgccca ccatggccat ggctttcgtg cggttttctt cggaggtcag
     1741 atccgcgata aacgcaatca ccgccgacga taccgcgccc atgccctgga tcacgcggcc
     1801 gacaatgatc cacgtcatgg aatggccgac cgccgccaca aagctgccga tggcgaacac
     1861 gaccagccca aacgcgatga ccggcttgcg cccgagcttg tccgagaccc agccataaaa
     1921 gatgtacagc agcgattgcg tcacgccgta agcgccgagc gcaatgccga ccagcagcac
     1981 gttgtcgccg ccgggaatgg ttttcgcgta aatggaaaac accggcatga tcatgaagag
     2041 accgagcatg cgcagcgcaa agattgcagc aagcgacacg gtcgcacgca actcgggcgc
     2101 gctcaaacgt gtggacgtaa cagacggatt ggacatcggg acgaggtaat gtggaaacgc
     2161 gtctggccgt gcgcgcggac gcggaactca agcacggccg ccttgtggtt gcccggaacg
     2221 gcactatatg agacgggtag ctggagcgtc tggacctgct tcaaaccttc gccggggcgg
     2281 cacgtaaaag tcgttcgaat gtcgcccgga cgccgcatga atgatgcgcc aacacccttc
     2341 gcaaccccgc cgcacgcttg atcgacgccg atgagcgcgg gcaacgcgcc ctcgaaaagt
     2401 cgttatagta gcaggtttag cccccttact ttccgcccgg ttcatggaag aaattcgtat
     2461 tcgtggggct cgcacccaca accttaagaa catcaatctc gacttgccgc gtcacaagct
     2521 gatcgtgatt acgggcttgt cgggttcggg gaaatcgtcg ctcgcgttcg acacgctcta
     2581 cgccgaaggc cagcgccgct acgtcgaaag tttgtccgcc tacgcgcgtc aattcctgca
     2641 gttgatggag aaaccggacg tcgacctgat cgaaggattg tcgccggcta tctcgatcga
     2701 acagaaggcg acttcgcata atccgcgttc gaccgtcggt acggtcacgg agattcacga
     2761 ctatctgcgc ttgctgtttg cccgcgtcgg tacgccgcac tgcccggacc accacattcc
     2821 gctcgaagcg caaagcgtgt cgcaaatggt cgacgccgcg ctcgccatgc ccgaggaaac
     2881 gaagctgatg atcctcgcgc ccgtggtggc ggatcgcaag ggcgagcacc tcgaattgtt
     2941 cgaagccatg caggcgcaag gtttcatccg gtttcgcgtg cgttcgggcg gggggacggc
     3001 gaacgaaggc gtagcgaaga tctacgagat cgagtcgctg cccaagctga agaagaacga
     3061 caaacacacg atcgatgttg ttatcgaccg gttgaaagtg cggccggaca tgaagcaacg
     3121 gctcgcggaa tccttcgaaa cagcactgcg tctcgccgat ggccgcgcga tcgcgctaga
     3181 gatggattcg gagaaagagc acctgtacag ctcgaagttc gcctgcccga tctgctcgta
     3241 ttcgctgcag gaactcgagc cgcgcctgtt ctcgttcaac aatcccatgg gcgcttgccc
     3301 tgaatgcgac ggcctcggcc agatcacgtt cttcgacccg aagcgggtgg tcgcgcatcc
     3361 gtcgctgtcg cttgcggcgg gcgcggtgaa aggatgggac cggcgcaacc agttctactt
     3421 ccagatgctg cagagcctgg cgtcgttttt cgaattcgat atagacgcgg ccttcgagga
     3481 cctacccgag aatgtccgca agatcctgct gttcggatcc ggcaaagagg tcattccttt
     3541 ctcgtacatc aacgagcgcg gccggacaac ggtccgcgag cacgcgttcg aagggatcat
     3601 cccgagtctt gagcgccgct acaaggaaac tgattcggcg gcggtccgcg aggaactggc
     3661 gaagtatcag aacaaccagg cctgcccggc atgcgaaggc acgcggctgc ggaccgaggc
     3721 gcgcaacgtc aagctcggca cgggcgagaa cgcacgagcc atttatgaag tgagcggctg
     3781 gccgctacgc gagacgctcg gttattttca tacgctgcgc ctggaaggcg cgaagggcga
     3841 gatcgcggat cgggtcatca aggaaatcgt cgccaggctc acgttcctga acaacgtcgg
     3901 gctggattat ttgtcgctgg agcgcagcgc cgaaacgctc tccggcggcg aggcgcagcg
     3961 tatccggctg gcatcgcaga ttggttccgg attgacgggc gtgatgtacg tgctcgacga
     4021 accgtctat
//
LOCUS       DATGBK010000051         2118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_231808, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000051 DATGBK010000000
VERSION     DATGBK010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231808"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..565)
                     /gene="cheD"
                     /locus_tag="VKJ77_00760"
     CDS             complement(<1..565)
                     /gene="cheD"
                     /locus_tag="VKJ77_00760"
                     /EC_number="3.5.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemoreceptor glutamine deamidase CheD"
                     /protein_id="HMC43835.1"
                     /translation="MSGLPIASNLYFDNHFKLPGVKLLPNEFYMTSEDMVLVTVLGSC
                     VSACIHDRSAGIGGMNHFMLPDDGSDASQSSSDSMRYGAYAMEVLINEMIKRGGRRER
                     FEAKVFGGGAVLAGMTTINIGDRNSEFVRRYLALEKIRIVAEDLQGMYPRKVAFMPRT
                     GQAMVKKLITQQDPSVVEREQVLARQTP"
     gene            complement(562..1509)
                     /locus_tag="VKJ77_00765"
     CDS             complement(562..1509)
                     /locus_tag="VKJ77_00765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HMC43836.1"
                     /translation="MMATRPPVATPRDRTRNGSEVERDFEFTSADFGRIRDLIHRRAG
                     ISLSEHKRDMAYSRLARRLRACNIDTFRLYLDTLEAQPNSDEWEAFTNALTTNLTAFF
                     RESHHFPILATFAKSRPQPFSVWCSAASTGEEPYSIAMTLMETLGDAAARHCTVIATD
                     IDSQVLQKADAGVYSLDSVKTLGADRLKRFFLKGTGAHAGMVKIRPEVRALVKFEQLN
                     LTDAKYALPGQFDAIFCRNVMIYFDKPTQAQVLARFEPLMKSGGLLFAGHSENFTYVT
                     QAFKLRGQTVYGLSRDTAAAAAALAATKKAGKTLAGELA"
     gene            complement(1661..>2118)
                     /locus_tag="VKJ77_00770"
     CDS             complement(1661..>2118)
                     /locus_tag="VKJ77_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014722234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC43837.1"
                     /translation="RVTDIMGEISAASDEQSQGIEQVSRAVGQMDEVTQQNAALVEQA
                     AAAAASLEEQTRKLKDVVGHWQVSSDVSSSDPRARIEPRVVARAHASSAIKVAARPNV
                     AANRAVNKLIASPAPAASAPAAPAAPAKSVAKAPATKLAVAASGDWETF"
BASE COUNT          376 a          666 c          641 g          435 t
ORIGIN      
        1 cgggcgtttg ccgcgcgagc acctgctcgc gttcgaccac gctcgggtct tgttgcgtaa
       61 tgagtttctt gaccattgcc tggccggtgc gcggcatgaa cgcgaccttg cgcggataca
      121 tgccctgcaa gtcctcggcg acgatgcgaa tcttttccag cgcgaggtag cgacggacga
      181 attccgaatt ccgatcgccg atattaatcg tcgtcatgcc cgccagcacc gcgccgccgc
      241 cgaacacttt cgcttcgaag cgttcgcgcc ggccaccgcg cttgatcatc tcgttgatca
      301 atacttccat tgcgtaggcg ccgtagcgca tggaatccga actggattgc gatgcgtcgg
      361 aaccgtcgtc gggaagcatg aaatgattca tcccgccaat gcccgccgag cggtcatgaa
      421 tgcaggccga cacgcatgaa ccgagcaccg tgacgagcac catgtcctca ctcgtcatat
      481 agaactcgtt cggcaacagc ttcacgcccg ggagcttgaa atggttgtcg aagtaaagat
      541 tcgatgcgat cggcaagcca ctcatgcgag ctccccggcg agcgtcttgc ccgctttctt
      601 cgtcgcggcc agtgccgctg ccgccgcagc agtgtcgcgc gacaacccat acaccgtctg
      661 gccgcgcagc ttgaacgcct gcgtcacgta ggtgaagttc tccgagtgcc cggcgaacaa
      721 taaaccgccc gacttcatca gcggctcgaa gcgcgcgagc acttgcgcct gcgtgggttt
      781 atcgaagtag atcatgacgt tgcggcagaa gatcgcgtcg aactggccgg gcagcgcgta
      841 cttcgcgtcc gtcagattca gttgctcgaa cttcaccagt gcgcgtactt ccgggcggat
      901 cttcaccatg ccggcatgcg cacccgtgcc tttcaggaaa aagcgcttca ggcggtcggc
      961 cccaagcgtt ttcaccgaat ccagcgaata gacgcccgcg tcggccttct gcaggacctg
     1021 gctgtcgata tccgtcgcaa tcaccgtgca atggcgcgcc gcggcgtcgc cgagtgtttc
     1081 catcaacgtc atggcgatgg aatacggctc ctctcccgtc gatgccgccg agcaccacac
     1141 cgagaacggc tgcggacggc ttttcgcgaa cgtggcgagg atcgggaaat gatgcgattc
     1201 gcggaagaac gcagtcaggt tcgtggtcag cgcgttggtg aacgcttccc actcgtcgct
     1261 attcggctgt gcttcaagag tatcgagata caggcggaac gtatcgatat tgcaggcgcg
     1321 cagacgtcgc gcgagacggc tgtacgccat gtcgcgttta tgctcggaca gcgaaatccc
     1381 cgcgcgacga tgaatcagat cgcgaatgcg gccgaaatcg gcgctggtga attcgaagtc
     1441 gcgttccact tccgaaccgt ttcgggtccg gtcgcggggt gttgcgacgg gcgggcgcgt
     1501 tgccatcatc tagcctttgt tctgctggaa cgtgcatcgg ctgcatcccg tacgggcgtt
     1561 gcaccgcgtt tcttcgacaa ccacacggcc cggcgcgctt cattggaatg ctcatcgagg
     1621 agcgcgatgt gatgggcttg catggttgtc tgacactgcc ttaaaaagtt tcccagtcgc
     1681 cggaagcggc aactgcgagc ttcgtggcgg gcgctttcgc gaccgacttt gccggggctg
     1741 ccggggctgc cggtgctgaa gcggccggag ccggtgaggc aataagctta ttaacggcgc
     1801 gattagccgc gacgttaggc cgcgctgcaa ctttaatcgc cgagcttgcg tgcgcccggg
     1861 cgacaaccct cggttcgatc cgcgcgcgcg gatcgctgga agatacgtcg ctgctgactt
     1921 gccagtggcc gactacatcc ttcagcttgc gcgtctgctc ttcaagcgac gccgccgcgg
     1981 ccgccgcttg ttcaaccagc gctgcgttct gctgcgtgac ttcgtccatc tgcccgacgg
     2041 cgcggctcac ctgttcaatg ccttgcgact gctcgtccga cgcggcgctg atctcgccca
     2101 tgatgtcggt gacgcggc
//
LOCUS       DATGBK010000052         2368 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_725, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000052 DATGBK010000000
VERSION     DATGBK010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_725"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /locus_tag="VKJ77_00775"
     CDS             <1..513
                     /locus_tag="VKJ77_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011356611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--glyoxylate aminotransferase"
                     /protein_id="HMC43838.1"
                     /translation="WAWDEIIEMNKSGYWPYTPNTNLLYGLSEALEMIGDEGLDQVFA
                     RHQRLAAACRAAVNAWGLEIQCADPAVYSPVLTGVMTPDGVDADAIRKTIYEHFDMSL
                     GTGLGKLKGRMFRIGHLGDCNDLTLMATLTGCEMGLKLSGVKLAGSGVLAAMDYLTSH
                     TAAPALKAAA"
     gene            593..>2368
                     /locus_tag="VKJ77_00780"
     CDS             593..>2368
                     /locus_tag="VKJ77_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC43839.1"
                     /translation="MLTKSSEALVQPIHLMPASARATLSPLAMRLRQELKGDVLFDRA
                     ARGRYATDASIYQIMPLGAVVPKDQADLLLALEIARDAHVPVLARGAGTSQCGQTIGE
                     ALVIDTSKWLNNIVHFDGDARTVTVEPGVVLDHLNAWLKPHGLWFPVDVSTSAQCTIG
                     GMAGNNSCGSRSMEYGIMVHNVAAIDAVLADGHRATFGALHAMSSDSRTRSLVEGVQR
                     IAQRERDEIREQVPKVLRRVAGYNIDLFDCQSPLPFSADGEPNLAQLLVGSEGTLAFS
                     RQLTLKLWPLPEHKTLGVVNFPTFYDAMDMTQHIVKLGPVAVELVDRTMIDLSMSNPA
                     FRPVIERALVGQPQAVLLVEFAGVDKAVQLAKLAQLVELMGDLGLPGSVVEMPDATQQ
                     KALWEVRKAGLNIMMSMKGDGKPVSFIEDCAVPLEHLAQYTTRLTEVFHKHDTEGTWY
                     AHASVGTLHVRPILDMRRTGAQKMRAIAEEASALVREYKGAYSGEHGDGLCRGEWVAW
                     QYGPRLNEAFREIKTLFDPENRMSPDRIVNPPKMDDATNFRFPPTYREREIATQLDWS
                     QWNVTRDPLTGVETGRGTGDDRTGGL"
BASE COUNT          465 a          705 c          771 g          427 t
ORIGIN      
        1 tgggcgtggg acgagatcat cgagatgaac aagagcggct actggccgta cacgccgaac
       61 accaacttgt tgtatggctt gtctgaagcg ctcgagatga tcggcgacga agggctcgac
      121 caggtcttcg cccggcatca acggttggcc gcggcttgcc gcgctgcggt caacgcatgg
      181 ggcctggaga tccaatgtgc cgacccggct gtctattcac cggtgctgac gggcgtgatg
      241 acgcccgacg gtgtcgacgc ggacgcaatc cgcaagacca tctacgagca cttcgatatg
      301 tcgctcggca cgggcctcgg caagctcaag ggccgcatgt tccgcatcgg acatctgggc
      361 gactgcaacg acctcacgct gatggccacg cttacaggct gtgaaatggg cctcaagttg
      421 tccggcgtga aacttgccgg cagtggtgta cttgcggcaa tggactacct gacgagccac
      481 accgcagcac cggcactgaa ggcggcggcg tgacacggag ccggtccggc ggcaacgcat
      541 gaccggctct ccttcgccga ctccccattt acttaaccgc gcgtagacgc cgatgctgac
      601 taaatcttcc gaagcgctcg tccagccgat ccacttgatg ccggcgtcgg cgcgcgccac
      661 gctgtcgccg ctggccatgc gcctgcgtca agagttgaag ggcgatgtgc tgttcgaccg
      721 ggcggcgcgt ggacgctatg cgacggacgc atcgatctat cagatcatgc cgctgggcgc
      781 agtcgtgccg aaagatcagg cggacttgct gcttgcgttg gagattgcac gcgacgcaca
      841 tgttcctgtg cttgcacgcg gtgccgggac gagccagtgc gggcagacga ttggcgaagc
      901 gctggttatc gatacaagca agtggctcaa caatatcgtc cacttcgacg gtgatgcacg
      961 cacggtgacg gtggagccgg gcgtggtgct cgatcatctg aacgcgtggc tgaaaccgca
     1021 cggcttgtgg tttcccgtcg atgtatcgac cagcgcgcaa tgcacgatcg gcggcatggc
     1081 gggcaacaat tcgtgcggct cgcggtcgat ggaatacggg atcatggtgc acaacgtggc
     1141 cgcgatcgac gccgtgcttg ccgatggtca tcgagccacg ttcggggcat tgcatgcgat
     1201 gtcatccgac tctcgcacgc gttcgctggt agaaggcgtg cagcgcatag cacaacgcga
     1261 acgcgatgaa atccgcgagc aagtaccgaa ggtattgagg cgcgtagcgg gctacaacat
     1321 cgatctcttc gattgccaga gcccgttgcc cttcagcgcc gacggcgagc cgaatctcgc
     1381 gcagttgctg gtgggctccg aaggcacgct cgcattcagc cggcagctca cgttgaaact
     1441 gtggcccttg cccgagcaca agacgctcgg cgtcgtgaac ttcccgacgt tctacgatgc
     1501 aatggacatg acccagcaca tcgtcaagct ggggccggtc gcggtggaac tggtcgaccg
     1561 cacgatgatc gacctgtcga tgtcgaatcc cgcgttccgt ccggtgatcg aacgtgcgtt
     1621 ggtcggtcag ccgcaagccg tattactggt cgaattcgct ggcgtggaca aggccgtgca
     1681 actcgcgaag ctcgcgcaac tcgtcgaact gatgggcgat ctgggcttgc cgggctcggt
     1741 cgtagagatg cccgatgcca cgcaacaaaa ggccttgtgg gaagtacgca aggccggcct
     1801 caacatcatg atgagcatga agggcgacgg caagccggtg tcgttcatcg aagattgcgc
     1861 cgtgccgctc gaacatctcg cgcagtacac cacgcgtctt accgaggtct tccacaagca
     1921 cgataccgaa ggcacctggt acgcgcacgc gagcgtcggg acgctgcacg tgcggccgat
     1981 tctcgatatg cgccgcaccg gcgcgcagaa aatgcgggcg attgcggaag aagcgtcggc
     2041 gctggtgcgc gagtacaagg gcgcgtattc cggcgaacac ggcgacggtt tgtgtcgcgg
     2101 cgaatgggtc gcgtggcaat acggaccacg tctcaatgag gcgttccgtg agatcaagac
     2161 actcttcgat cctgagaatc gcatgagtcc ggatcgcatc gtgaatccgc cgaagatgga
     2221 cgacgcaacg aactttcgct tcccgccgac gtatcgggag cgcgagatcg cgacgcaact
     2281 cgactggtcg caatggaacg tgacacgcga tccgttgacc ggtgtcgaga ccgggcgggg
     2341 gacgggcgac gatcgcaccg gcgggctc
//
LOCUS       DATGBK010000053         1574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_162652, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000053 DATGBK010000000
VERSION     DATGBK010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162652"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..951
                     /locus_tag="VKJ77_00785"
                     /pseudo
     CDS             1..951
                     /locus_tag="VKJ77_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922957.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
     gene            complement(1096..1572)
                     /locus_tag="VKJ77_00790"
     CDS             complement(1096..1572)
                     /locus_tag="VKJ77_00790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6496 domain-containing protein"
                     /protein_id="HMC43840.1"
                     /translation="MERAHAAKRAGKSPSTQAGAFVKEQIDHVREGKHGAKSAKQAIA
                     IGLSEARRSGVGVKAPKKGAASAATRKKAAKDTQAGQHKTQRSASTESKSKRSATSTR
                     VLKRESTKAASSKSLSKQAHASASRRSAADRSASAKKGWQTRRKAASKPGAARHAR"
BASE COUNT          270 a          507 c          489 g          308 t
ORIGIN      
        1 tatcaccgtg cacgcggcga aggccagctc acgaaactga tcggccgcga gcgctgatat
       61 cacggcgtgg gcttcagcgg catctcggtc ggcggcatcg ggccgaaccg caagacgttt
      121 tcgggcgggt tgctgccgaa catcgatcat ctgccgcata cgcacgcgcc tgagcacaac
      181 gcgttctcga agggccagcc ggcgtggggc gcgcatctcg ccgatgaact cgaacgcatc
      241 gttgcgctgc acgatgcatc gactatcgct gccgtgatcg tggaaccgct cgcaggttcg
      301 acgggggtgc tcgtgccgcc gcagggttat ctgcaaaagc tgcgcgagat ctgcacgaag
      361 cacggcatcc tgctgatttt cgatgaagtc atcacgggct tcggccggct cggcaaagcg
      421 acggcggccg aatatttcgg cgtgacgccg gacctgatga cgctggcaaa agcgatcaac
      481 aacgccgcca ttccgatggg cgcggtggct gcgcatcgca acgtgcatga cacgatcgtc
      541 aacgcgggcg ccgtgaacgg tatcgagttg ttccacggct acacgtattc ggcgcacccc
      601 atggccgccg ctgccgcgat cgccacgctc gacctgtatg cacgcgacca actgtttgaa
      661 cgggcggcat cgaaggcacc gaaattcgaa gccgccgctc atgcgttgcg cgatgcgcct
      721 cacgtgaagg acgtgcgcaa tctcggcatg gtggcgggta tcgaactgga gtcgcgcgcc
      781 ggcgcgccgg gcgctcgggc ctacgaagcg ttcgtgaaat gcttcgaagc aggcgttctg
      841 gtgcgctaca caagcgatat tcttgcgttc tcgccaccgt tgatcattga agacgaccag
      901 atcgagcaga ttttcagcac ggttcgcaag gtgctcgaaa cggtgaaata acgtagtttc
      961 gacagccgct tgccatcgat gacgcaagcg gcatacgagt cagcgtgcaa gccgtacttg
     1021 caagcctaaa ggccgttcca gttgatccgg aacggccttt cttcgtggca gcaccgcaaa
     1081 tgcgcgaacc gcgctctagc gcgcatgccg cgctgcaccc ggcttcgatg ctgccttgcg
     1141 acgcgtctgc cagcccttct tggcggaagc cgagcggtca gccgcagaac gccggcttgc
     1201 gctcgcatgc gcctgcttcg acagcgactt ggacgaggcg gccttggtgc tctcgcgttt
     1261 gagaacgcgc gtggacgtgg cggaacgttt cgatttcgat tccgtgctcg cgctacgttg
     1321 ggtcttgtgc tgacccgcct gcgtatcctt cgccgctttc ttgcgggtgg cagcggacgc
     1381 cgcgcccttc ttcggcgcct tcacgcctac ccccgacctg cgtgcctccg acaacccgat
     1441 cgcgatcgcc tgcttcgcgg actttgcacc gtgcttgcct tcgcgcacgt gatcgatctg
     1501 ctccttcacg aacgcaccgg cctgcgtgct cggcgacttt cccgcacgtt tggccgcatg
     1561 tgcgcgttcg atgg
//
LOCUS       DATGBK010000054         2399 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_139475, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000054 DATGBK010000000
VERSION     DATGBK010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139475"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..197
                     /locus_tag="VKJ77_00795"
     CDS             <1..197
                     /locus_tag="VKJ77_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002272.1"
                     /note="part of the FhuBCD ATP-dependent iron (III)
                     hydroxamate transporter; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Fe3+-hydroxamate ABC transporter ATP-binding
                     protein FhuC"
                     /protein_id="HMC43841.1"
                     /translation="VVVLHDVNMAARFCDDLLALKGGRLLASGTPAELMHADTLGAIY
                     GIPMGTVPHPHGGSPISFAH"
     gene            214..>2399
                     /locus_tag="VKJ77_00800"
     CDS             214..>2399
                     /locus_tag="VKJ77_00800"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HMC43842.1"
                     /translation="MKQVVRFAAALVFAAVTLIGCVQSPRNLASAGSPFSVEIRRTQD
                     GIPHIKADDWASLGYGYGYVQAQDNLCTLADGFITFRGERSANFGADARPPSAASFGQ
                     PRNLEADFFFRFVDDASTVERYRSAQSAPIRALMDGFVAGYNRYVDELDAGRMGGTNA
                     ACKGKPWVGKITSDDMIRRLVAANLAGGAVRFLPQIARAQPPVKAAPPAPAVQTGAVD
                     IAPSQFDVGGQRGIGSNALAFGAPVTQEGRSLLFGNPHWFLRGPDRFYEAQLTIPGKL
                     NVAGASFLGVPVVMIGFNNDIAWTHTVSSARRFGIFQLSLDPADPTRYFYDGVSEPMT
                     PVPVTVQTRNADGSLTPITRTLYRSRFGPLVDLSSMSPALAWNAQQAFALRDVNTNNT
                     RAFENFLAWDQARSLDDFIAIQKRLAATPWVNTLAIGRDDPRVWFADFGAVPDVPDSL
                     AAACTTPLGRAFDAKAPGVPFLDGSKSACEWRVEASSVQAKALPVSEMPGMARGDYVG
                     NFNGSYWLTNANAPMTGYPQVAGITGTEQSLRTRFGHMLAAELQAQKGGVTRLALETK
                     VLDSRSMSEQLFRKPILDVVCTDTPDALVSVTQGTPGSASKTVDLGPACRVLREWDGT
                     ANTQARGANLWDEFWRRLDGAGLAHFYRVPFDPAAPLATPRGLDTANPALKPALQQAL
                     GGAVLAMQRYGFALDSTRGELLHADRNGERVPLFGGCDDAGYFTVM"
BASE COUNT          396 a          738 c          775 g          490 t
ORIGIN      
        1 tggtggtggt gctgcacgac gtcaacatgg ccgcgcgttt ctgcgacgat ctcctggcgc
       61 tcaagggcgg ccgtttgttg gcatcgggca cgcccgcgga gttgatgcac gctgacacac
      121 tcggcgcgat ttatggtatt ccgatgggca cggtcccgca tcctcacggc ggttcaccca
      181 tcagtttcgc ccattgattc aaggttcgat gccatgaagc aagttgtcag gttcgcggcg
      241 gcgttggtgt tcgccgcagt cacgttgatc ggttgcgtcc agtctccgcg aaatctggcg
      301 agcgccgggt cgcccttcag cgtcgagatc cgccgtacgc aagacggtat cccgcatatc
      361 aaggccgacg attgggccag ccttggttat ggctatggtt atgtgcaggc gcaagacaac
      421 ctgtgcacgc tcgcagatgg tttcatcacg tttcgcggcg agcgctcggc gaatttcggt
      481 gccgatgcac ggccgccatc ggctgcttcc ttcggccagc cgcgcaatct cgaggccgat
      541 ttcttctttc gtttcgtcga cgacgcgagc acggtcgagc gataccgatc cgctcaatcc
      601 gcgcccattc gcgcgttgat ggacggtttc gtggcgggct ataaccgcta cgtcgacgag
      661 ctggacgcgg gacggatggg cggcactaat gcggcgtgca aaggcaagcc gtgggtcggc
      721 aagatcactt ccgacgatat gatccggcgg ctcgtggcgg ccaatcttgc cggcggcgcc
      781 gtacggttct tgccacagat agcgcgcgca cagcctcccg tgaaagccgc accgccggcg
      841 ccggccgtcc agaccggtgc cgtcgatatc gccccttcgc aattcgacgt gggcgggcag
      901 cggggcattg gcagcaatgc gcttgcgttc ggcgcaccgg tcacgcagga gggccgtagc
      961 ctcctgttcg gtaacccgca ctggttcttg cgcgggcctg atcgtttcta tgaagcacag
     1021 ctaaccatcc cggggaaact gaatgtagcg ggtgcgtcgt ttctcggcgt gccggtcgtg
     1081 atgattggtt ttaacaacga catcgcgtgg acgcatactg tgtcgagcgc gcggcgcttc
     1141 ggtattttcc agttatcgct cgatcccgcc gatcccacgc gttatttcta cgacggcgtc
     1201 agcgagccga tgacacccgt gcccgtcacg gtccagaccc gtaatgccga cggcagcctg
     1261 acaccaatca cgcgcacgct gtaccgctcg cggtttggtc cgctcgtgga tctgtcgtcg
     1321 atgtcgccgg cgctcgcctg gaatgcgcaa caagcgttcg cgctgcgcga cgtgaatacc
     1381 aacaacacgc gcgccttcga gaacttcctg gcgtgggatc aggcgcgctc cctcgacgat
     1441 ttcatcgcga tccagaagcg cctcgcggcc acgccgtggg tgaacacgct ggcgatcggt
     1501 cgcgacgatc cgcgtgtctg gttcgccgac ttcggcgctg tgccggatgt ccctgattcg
     1561 ctggcagcag cctgtaccac gccgctgggc cgggcgttcg atgcgaaagc gcccggtgtg
     1621 ccgtttctcg atggttcgaa aagtgcctgc gaatggcgcg tcgaagcatc gagcgtgcag
     1681 gcaaaagcat tgccggtctc cgagatgccg ggcatggcgc gtggcgatta tgtcggcaac
     1741 ttcaacggca gttactggct gactaacgcc aacgcgccaa tgacgggtta tccgcaagtg
     1801 gcgggcatta ccggcacgga acagtcgttg cgcacgcgtt tcggccacat gcttgcggct
     1861 gagttgcagg cgcaaaaggg cggtgtgacg cggcttgcgc ttgagacgaa ggtgctggat
     1921 agccggtcga tgtcggagca attgttccgc aagcctatcc tcgacgtagt ctgcaccgat
     1981 acgccggatg cattggtttc agtcacgcaa ggcacgccgg gcagcgcatc gaaaacagtg
     2041 gacttggggc ctgcgtgcag ggtcctgcgt gaatgggacg gcaccgccaa cactcaagcg
     2101 cgtggcgcca atctctggga tgaattctgg cgtcgcctgg atggagcggg gctggcgcat
     2161 ttctaccgcg tgcccttcga tccggctgcg ccgcttgcga cgccacgcgg tctcgacacc
     2221 gccaatcccg cgcttaaacc tgctcttcag caggcgctcg gcggcgcggt gctcgcgatg
     2281 cagcgttatg gttttgcgct cgactccaca cgcggcgaac tgctgcacgc tgaccggaac
     2341 ggcgagcgtg tgccgctctt tggcggttgc gacgatgcgg gttatttcac ggtgatgtg
//
LOCUS       DATGBK010000055         2133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_301230, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000055 DATGBK010000000
VERSION     DATGBK010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301230"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VKJ77_00805"
     CDS             complement(<1..263)
                     /locus_tag="VKJ77_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006416882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HMC43843.1"
                     /translation="MQATKVHVHLFYGADPRFYRKGENIGCLYGYHHAESPELTLTYS
                     RDEPENKFVRLARRGLKAALGFDFMHTWRNREEILNADVVWTHT"
     gene            complement(320..1306)
                     /locus_tag="VKJ77_00810"
     CDS             complement(320..1306)
                     /locus_tag="VKJ77_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HMC43844.1"
                     /translation="MTISVMVPTYRRPADLKRCLDALRAQARPADEVLVVARPEDDAT
                     HRALETELAANNPFLLRVIETGLGGQVAALNRGLDAAHGDIIAITDDDAAPRVDWLAR
                     IDQAFSNDQTLGALGGRDWVFERGALLDGERSEVGVIRRTGKICGNHHLGVGAPRTVS
                     LLKGANMIYRRSAVGGLRFDTRLRGKGAQPCNDLSFSLSVRRTGWKMVYDPRVAVDHF
                     PAERFDDNGRDAQTLGALADTAYNLHLVLREHLGPVARHIAWYWYAAIGTRAMPGFAH
                     ALLALTRTRDTACWARYRAMRKGAQDARRDAQHEPAAYALAMRGRTDGASAA"
     gene            complement(1343..>2133)
                     /locus_tag="VKJ77_00815"
     CDS             complement(1343..>2133)
                     /locus_tag="VKJ77_00815"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009895611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HMC43845.1"
                     /translation="VERLAGLPLVGLIPMSTEQVKLDEEAKRTERDRDRVSPILATMR
                     PNDVCVEIMRSLRTSLQFTLMEARNHTVMLTGPASGVGKSFLAVNLAVLLAASGKKVL
                     LIDADMRRGKLERSFGLERANGLAELLAGTIGLEQAIRTTRTPFLSFMPSGKRPENPS
                     ELLMSPRLQQYLDGLGRVYDVVFIDTPPVLAVTDASIIGKLSGTNFLVMRSGAHNEME
                     ISDAIRRLRSAGIPLHGAIMNGMPARSRGYNRGHYAAVEDYLNV"
BASE COUNT          409 a          699 c          647 g          378 t
ORIGIN      
        1 gtatgcgtcc acaccacatc ggcgttgaga atctcctcac gattacgcca cgtatgcatg
       61 aagtcgaaac caagcgccgc cttcaatcca cgccgcgcga gccgcacgaa tttgttctcg
      121 ggttcgtcgc gcgaatacgt cagcgtgagt tcaggagact ctgcatggtg ataaccgtac
      181 aggcagccga tgttctcccc tttgcgataa aaccgcgggt ctgcgccgta aaacaaatgc
      241 acgtgaacct tggtcgcttg catacgggaa acctccacat cgatgtgatc ctgcgagttc
      301 cgaacccgcg atacgcggct catgcggcgc tcgcgccgtc ggtgcggccg cgcatggcaa
      361 gcgcataggc tgcgggctca tgctgtgcgt cacggcgcgc gtcttgagcg cctttgcgca
      421 tggcacggta acgcgcccag caggccgtgt cgcgagtgcg cgtaagcgct agcagcgcat
      481 gcgcgaagcc gggcattgca cgggtgccaa tggcggcgta ccagtaccac gcaatgtgcc
      541 gtgccaccgg acccaggtgc tcgcgcagta cgagatgcag gttgtatgcg gtgtcggcga
      601 gtgcgccgag cgtttgcgcg tcgcggccat tgtcatcgaa acgttcggcg ggaaaatgat
      661 cgaccgccac gcgcggatcg tagaccatct tccagcccgt gcgccgcacg ctcaggctaa
      721 acgacaggtc gttgcagggc tgcgcgccct tgccgcgcag acgcgtatcg aagcgcaatc
      781 cgcccaccgc cgagcgtcga taaatcatgt tcgcgccctt cagcaacgag accgttcgcg
      841 gtgcacccac accgagatga tggttgccgc aaatcttgcc ggtgcggcgg atcacgccga
      901 cttccgaacg ctcgccatca agtagcgcgc cgcgttcgaa cacccagtca cggccgccga
      961 gcgcacccag cgtttgatca ttgctgaacg cttgatcaat tcgcgccagc caatcgacgc
     1021 gcggcgcggc gtcgtcgtcg gtgatcgcga tgatgtcgcc gtgcgccgca tcaagcccgc
     1081 ggttaagcgc ggcgacctgc ccgcccagac ccgtctcgat cacgcgcagc aggaacggat
     1141 tgttcgcggc cagctccgtt tcgagcgcgc gatgcgtcgc atcgtcttcg ggacgcgcga
     1201 cgaccagcac ttcatccgcc ggacgagctt gcgcacgcaa cgcgtcgagg caacgcttca
     1261 ggtcggcggg acgacgatac gtcggcacca tcacggagat tgtcagggtc gaggtcgatg
     1321 tcatgcagcg ctccgctcgc gttcaaacat tcaagtagtc ttcaaccgct gcatagtgtc
     1381 cgcggttata accacgcgaa cgtgccggca tgccgttcat gatcgcgccg tgcagcggaa
     1441 tacccgccga acgcagacgc cggatggcat cggaaatttc catttcgttg tgcgcgcccg
     1501 agcgcatcac gaggaagttg gtccccgaga gcttgccgat aatcgatgca tccgtgacgg
     1561 cgagcaccgg cggggtatcg atgaaaacca cgtcgtacac acgccccagg ccatcgaggt
     1621 attgctgcaa gcgcggcgac atcagcagct ctgacggatt ctccggacgc ttgcctgaag
     1681 gcatgaaact caggaacggc gtgcgcgtgg tgcggatggc ctgctcgagc cctatcgtgc
     1741 cggcaagcaa ttcagccagg ccgttcgcac gctcgaggcc gaacgaacgt tccagcttgc
     1801 cgcgtcgcat atcggcgtcg atcagcagca ccttcttgcc cgacgccgcg agcagcacgg
     1861 cgaggttcac cgcgagaaag ctcttgccga cacccgacgc cgggcccgtc agcatcaccg
     1921 tgtgattgcg cgcttccatc agcgtgaact gcagcgacgt gcgcaggctg cgcatgattt
     1981 ccacgcagac atcgttcgga cgcatggtcg cgagaatggg tgagacacgg tcacgatcac
     2041 gctccgtgcg cttcgcttcc tcatcaagct tcacctgctc cgtgctcatg ggaatgagac
     2101 cgaccagcgg caaccctgcc aggcgctcga cct
//
LOCUS       DATGBK010000056         2581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_23820, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000056 DATGBK010000000
VERSION     DATGBK010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23820"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(208..1305)
                     /locus_tag="VKJ77_00820"
     CDS             complement(208..1305)
                     /locus_tag="VKJ77_00820"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009027 - tartrate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0046395 - carboxylic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tartrate dehydrogenase"
                     /protein_id="HMC43846.1"
                     /translation="MKTYRIATIPGDGIGKEVVPAGAQVLKALAKTTKSFAFEFENFD
                     WGGDYYREHGVMMPEDGLDAIRDKDAILFGSAGDPDIPDHITLWGLRLKICQGFDQYA
                     NVRPTRILPGIDGPLKRCKPEDLNWVIVRENSEGEYSGVGGRVHQGHPIEAATDVSIL
                     TRAGVERIMRFAFRLAQSRPRKLLTVITKSNAQRHAMVMWDEIALEISKEFPDVKWDK
                     ELVDASTARMINRPETLDTIVATNLHADILSDLAAALAGSLGIAPTGNIDPERRYPSM
                     FEPIHGSAFDIMGKGLANPVGTFWSVVMLLEHLGEVDAAKRVMQAVEAVTADTSLHTR
                     DLGGTATTAQVTAAVCALLDQGAAAPASAAA"
     gene            1415..2341
                     /locus_tag="VKJ77_00825"
     CDS             1415..2341
                     /locus_tag="VKJ77_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC43847.1"
                     /translation="MRDTVQPSDLSFFSTLAASGSLSATARELGLTAAAVSKHLTQME
                     SRAGVALVNRTTRRMMLTPEGELYLEHARRILDEIDELAELLGSAKKNPKGLLRVNAT
                     LGFGRSHVAPIISRFVAKYPQVSVQLQLSVTPPPLTDDTFDVCIRFGEPPDTRVVARR
                     LAGNRRLLCAAPSYIAARGIPMTAHDLTRHNCIGIRQGDEAYGVWRLTSGRGASRKTE
                     AVRINGTLTTNDGEIAVKWALEGHGILMRAEWDIKQFLADGSLVLVLPDHDTPNADIF
                     AVYSQRHQMSNRIRAFVDFIAQDLRSEARELA"
BASE COUNT          482 a          775 c          796 g          528 t
ORIGIN      
        1 aaccgcggcc agcgtttcgg tcagcgtgcc aatctggttc ggtttgatca aaatcgagtt
       61 cgcgagattg atacgtgggg caaacacttc cccagccgca gaaaactgcg gtttcaatcc
      121 cggactacgc gttgattcgg gccgcctgat ggggtcgcta cgcgacacgc atgagaggca
      181 tgctcaggcg gcccggagtc ggtctggtta cgctgcagcg cttgcaggtg cggctgcgcc
      241 ttggtcgagc agcgcacaaa cggcagccgt gacttgtgcc gttgttgcgg taccgccgag
      301 gtcgcgcgta tgtaacgacg tgtctgcagt cacggcttcg accgcctgca ttacacgctt
      361 ggccgcatcg acctcgccga gatgttcgag cagcatcacg accgaccaga aggtgccgac
      421 cgggttggcc agacctttgc ccatgatgtc gaaggcggag ccgtggatcg gctcgaacat
      481 tgacggatag cggcgttccg gatcgatgtt gcccgtcggt gcgataccga ggctgccggc
      541 gagtgcagcc gcgaggtcgc tgagaatgtc ggcgtgcagg ttggtggcga cgatcgtgtc
      601 gagcgtctcg gggcggttga tcatgcgcgc cgtcgacgca tccacgagtt ccttgtccca
      661 tttgacgtcg gggaattcct tcgagatttc aagcgcgatc tcgtcccaca tcaccatggc
      721 gtgtcgttgc gcgttgctct tagtgatcac ggtcagcagc ttgcgcggac gggattgcgc
      781 aaggcggaag gcaaaacgca tgatgcgttc gacgccggcg cgcgtcagga tcgacacatc
      841 agtcgcggct tcgatcggat gaccctgatg gacgcggccg cccacgcccg aatattcgcc
      901 ctctgaattt tcgcgcacga tcacccagtt caggtcttcc ggcttgcagc gctttaacgg
      961 gccatcgata cccggcagga tgcgggtcgg acgaacgttc gcgtattgat cgaagccctg
     1021 gcagatcttc aggcgcaggc cccacagcgt gatgtggtcg ggaatgtccg gatctcccgc
     1081 cgagccgaac aaaatcgcgt ccttatcgcg gatcgcgtca aggccgtcct ccggcatcat
     1141 gacgccgtgc tcgcggtagt agtcaccgcc ccagtcaaaa ttttcgaact caaaggcgaa
     1201 cgacttcgtg gtcttggcaa gtgccttgag cacttgagca ccagcgggta cgacttcctt
     1261 gccaataccg tcgccgggga tcgttgcaat ccggtatgtc ttcatgtttc tgtctccaac
     1321 ctgttgtggg tgtgaatgaa ctttacccct ctccgagcgc gaaaaccggt gctaaactca
     1381 aagcatcttt aacttgaatt cacaagtgaa agctatgcga gacactgtcc aaccgtccga
     1441 tctgagtttt ttctcgaccc tcgcggcgtc cgggagcctt agcgcgacgg cacgggaact
     1501 gggcctgaca gcagcggccg ttagcaagca cctgacgcag atggagagcc gcgccggcgt
     1561 ggcgctcgtc aaccgcacca cgcggcggat gatgctcacg ccggagggcg aactgtatct
     1621 ggaacacgcg cgccggattc tcgatgaaat cgacgaactg gccgagttgc tcggcagcgc
     1681 gaagaaaaac ccaaagggat tgctgcgggt gaacgcgacg ctcggcttcg ggcgcagcca
     1741 tgtcgcgccc atcatttcgc gcttcgttgc gaaatatccg caggtgtcgg ttcagcttca
     1801 gttgtctgtc accccaccgc cgctgacaga cgacacgttc gacgtctgta tccgtttcgg
     1861 tgagccgccc gatacgcggg tggttgcacg tcgtctcgct ggcaatcggc ggctgctgtg
     1921 tgccgcacct tcgtacatcg ccgcacgtgg gataccgatg accgcgcacg acttgacgcg
     1981 gcacaactgc atcggcatcc gccagggcga cgaagcctac ggcgtgtggc gtttgacctc
     2041 gggaaggggc gcgtcgcgca aaacggaagc cgtgcggatc aatggcacgc tgacaacgaa
     2101 cgatggtgag atcgcggtga agtgggcgct cgaaggacac ggcatcctga tgcgcgccga
     2161 gtgggacatc aaacagtttc tggccgatgg ttcactggtc ctcgtactgc ctgaccatga
     2221 cacgccgaac gccgatattt ttgcggtgta ttcgcagcgc caccagatgt cgaatcgcat
     2281 ccgtgcgttc gtcgacttta tcgcgcagga ccttcgtagc gaagcgcgcg aactcgcata
     2341 acggcttggc ggcgaggtgt tgaaagcgga cattcgccgc gagcaccatg accgtccgag
     2401 ttgggtcggg ttgcacctct cgctctctct gacaaagcct catcggcaag ttgcctggag
     2461 ccagctgcgg ctcgcggtga tccttcgatt tccgcgctgt cccggcagtc cagctaattc
     2521 cgagctattc caacgaattc cttttcccga cgataccgcg gtcgcttgcg gtgccgcgtg
     2581 g
//
LOCUS       DATGBK010000057         5516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_231855, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000057 DATGBK010000000
VERSION     DATGBK010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5516
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231855"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..748
                     /locus_tag="VKJ77_00830"
                     /pseudo
     CDS             1..748
                     /locus_tag="VKJ77_00830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007743547.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
     gene            762..2243
                     /locus_tag="VKJ77_00835"
     CDS             762..2243
                     /locus_tag="VKJ77_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012211076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC43848.1"
                     /translation="MNKKLMTLAVIAAVALLALGYVAGTWHANTNGAATTASMGSEKE
                     AGRKVLYWHDPMMPNQHFDKPGKSPFMNMQLEPVFADEGASSGVKIDPGLQQNLGIRY
                     ATARRVDVVTSFEAVGTTQFDESLADVVQSRVTGYIDRLYANAPMQRVVKGTPIASLF
                     VPDWLAPQEEYLALRRSGMDDTMLAASRERMRALSIPDAVVANLDRTGRAQTHVTLSA
                     PATGVITELNVRDGAMVSPGQTLAKVAGLGTLWLVIDVPEARALQVKAGMSVDAVFAG
                     DTTQHFTGHIREVLPGISTASRTLQVRLSIDNKDLSLTPGMLVRARIGGATTASRLVV
                     PSEAVITTGKRSIVIVKQADDRLQPVTVTTGNDSGSDTEVLSGLSEGEQVVASGQFLI
                     DSEASLKSVLPRLDAGPASDVHAAAQAYETTGRAEAVTSHDITFSHQPVPALGWGAMT
                     MAFSKPSTTAFPDVKAGETVHFAFKQSDDGYELTKVEPIGDGK"
     gene            2240..5458
                     /locus_tag="VKJ77_00840"
     CDS             2240..5458
                     /locus_tag="VKJ77_00840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012338825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC43849.1"
                     /translation="MIARLIRWSIRNRFLVLLATVLITGWGVYPLTQTPLDALPDLSD
                     TQVIIKASYPGKAPQVVEDQVTYPLTTTLLGVPGAKTIRAYSSFGDAFVYVLFDDKTD
                     QYWARSRVLEYLNQVQSRLPQGASVSLGPDATGVGWVYEYALVDRTGKHDLGQLRALN
                     DWFLKFELKAVPDVSEVASIGGMVRQYQVVLDPDKLRAYGITQATVTDALKKANQESG
                     GSVVELAESDYMVRSSGYLHSLDDFRNVVLRTTDAGTPVLLGDVARIQIGPEMRRGIA
                     ELNGEGEVAGGVIVMRSGKNALTTIEAVKAKLDTLKKSLPPGVEVVTTYDRSKLIERA
                     VSNLRDKLIEEFVIVGLVCALFLFHLRSAFVAILSLPLGVLAAFIVMRYQGVNANLMS
                     LGGIAIAIGAMIDAAIVMIENAHKHLEAFDHAHPDQPITAFERWELIATSAAEVGPAL
                     FFSLLIITMSFIPVFSLEGQEGKLFSPLAFTKSYTIAAAALLSVTLVPVLMGYFIRGR
                     IPNENANPINRVLIRLYRPLLEATLRRPWAAIGIAVIALVLTLIPLSRLGGEFLPPLD
                     EGDLLYMPTALPGISAEKASELLQQTDRLIKTVPEVATVFGKSGRADTATDPAPLEMF
                     ETTIQFKPRSQWRPGMTPEKLVDELDRTVKVPGLSNVWVPPIRNRLDMLSTGIKTPVG
                     VKISGGELSVIDSIATQVEAVIKTVPGVSSALAERLNGGRYIDVDIDRLKAARYGLAV
                     ADIQSVVSSAVGGENVGEVIDGRQRFPINVRYPRAVRDSLENLRRLPVVTERDAQIML
                     GDVADLSIADGPPMIRSENARLAGYVYVDIRDTDLQSAVTAMQRVVAEKVVLPAGYSI
                     AWSGQFEYLERASATLRTVIPVTLVIIFVLLFLTFNSAADALLLMSTVPFALVGGFWL
                     IWALGHAVSVATAVGFIALAGVAAEFGVVMLLYLKRALEHRLDAGAVLTEALLFDTIR
                     EGAVLRVRPKAMTVAVVLAGLIPIMLGHGAGSEVMQRIAAPMVGGMVTAPLLSMFVIP
                     AAWLLLKRRQVRRAAQARSEFDGPPGTHVPSHVPSIHTGEMK"
BASE COUNT         1033 a         1608 c         1732 g         1143 t
ORIGIN      
        1 cttatcgcgg cgccaaagcc agtgctaccg atgtgaccca ggcgcagctc atgctcgcgc
       61 agacccgtga ccagctgctc aaggcgcagc aaacgcttca gacggcgctc atcggtttgt
      121 ctcgatggac ggcggcaccc gttgccgata tctccggcga gccgcctgcg ccgcagtcgg
      181 tggttgcgtc gctgccgcct gaggagctgc aacgtgttga gcctgcgctg gtcaatgcgt
      241 cgtcggagat agcggtcgcc gacgccgaca ccgccgtcgc ccatagcaac cgcagtccga
      301 actggacctg ggaagtcgcg taccagcaac ggggtggtca gtactcgaac atggtctcgg
      361 tcggcgtcag cattcctatt ccgttgaaca gaagggatcg gcaagaccgc gataccgcgg
      421 aaaagccgag ctaggcacga aggcgcgttt gatgtacgaa gacgcgcagc gtcaagtcga
      481 tgccgatatc cgcaacctct ccaccacgct ggccagcggg cgcgagcgca tcgccaacct
      541 gaacgcatcg ctgctgcctg cagcggacca gcgcttgcag ctatcgaccg cggcttatag
      601 agccggcgca ggatcgctgg ccgatacctt cgccgcccga cgcgccgtgc tcgacgcacg
      661 tttgcaagtg ctcgatctcc aacgcgacgt atcgctcacc tgggctcagc tcgagtaccg
      721 ggtcgtcccg ccttccatga cctactgaca gtgagaacaa gatgaacaag aaacttatga
      781 cgctcgctgt catcgcggcg gtggcgttgc ttgctttagg ttatgtggcc ggaacctggc
      841 acgccaatac aaacggggcc gcgacgaccg catcgatggg cagtgaaaaa gaggccggcc
      901 gcaaggtgct ctattggcac gatcccatga tgccgaacca gcacttcgat aaacccggca
      961 agtcgccctt catgaacatg caactggagc ccgtattcgc ggacgaaggt gcgtcaagtg
     1021 gcgtgaagat cgatccgggt cttcagcaaa acctcggcat tagatatgcc actgcacgcc
     1081 gcgttgatgt agtgaccagc ttcgaggccg tcggtacaac gcagttcgat gagtcattgg
     1141 ctgatgtggt ccagtcgcgc gtgacgggtt acatcgaccg cttgtatgcg aacgccccga
     1201 tgcaacgggt ggtgaaaggt accccgattg cgtcgctgtt tgtaccggac tggctggcgc
     1261 ctcaggagga gtatctggcg ctcagacgca gcggcatgga cgacaccatg ctcgcagcct
     1321 cgcgtgaacg catgcgcgct ttatcgatac cggatgcagt cgtggccaac ctcgatcgca
     1381 ctggccgtgc gcagacgcac gtcacgttgt cggcgccggc gaccggcgtg attaccgaac
     1441 tgaatgtccg cgatggtgcg atggtctcgc ctggccagac gctcgccaag gtcgcgggct
     1501 tgggcacgtt atggctcgtg atcgacgtgc ccgaggcgcg ggcgttgcag gtcaaggcag
     1561 gcatgagtgt ggacgccgtg tttgccggag acaccacgca gcatttcacc ggacacattc
     1621 gcgaagtcct gccggggatc agtaccgcca gccgtacctt gcaagtgcgc ctttccatcg
     1681 acaacaagga tctgtcgctc acgcccggca tgctcgtgcg cgcgcgtatc ggcggggcga
     1741 cgaccgcgtc gcgtctggtc gtgccgtccg aggcggtgat cacgaccggc aagcgctcga
     1801 ttgtgatcgt gaagcaagca gatgatcggc ttcagcccgt caccgtgacg accggcaacg
     1861 attcgggcag cgataccgaa gtgttgagcg gtttgagcga aggggagcag gtggtcgcat
     1921 cgggtcagtt cctgatcgac tctgaagcga gcctcaagtc ggttcttcca agacttgacg
     1981 ctggaccggc gagcgatgtg catgccgcgg ctcaggccta cgagactacg ggcagggccg
     2041 aagcggtgac aagtcatgac atcacgttct cgcatcagcc tgtgccggcc ttgggctggg
     2101 gcgcgatgac gatggcgttc agcaagccct ccacaaccgc attccctgac gtgaaagcgg
     2161 gcgaaacagt gcacttcgcg ttcaagcaat ccgacgatgg atacgaactg acgaaggtcg
     2221 aaccaatagg ggacggaaaa tgatcgcgcg actcattcgc tggtctatcc ggaaccgttt
     2281 cctggtcctg cttgcgactg tcctgatcac gggctggggt gtttatccgc tgactcaaac
     2341 accgctcgat gcgcttcccg acctgtcgga tacgcaggtc atcatcaagg catcgtatcc
     2401 gggcaaagcg ccgcaggtcg ttgaagatca ggtgacgtat ccgctgacga caacgctcct
     2461 gggcgtgccg ggtgccaaga ccatccgcgc ctattcatcg ttcggcgatg cattcgtcta
     2521 cgtcctcttc gacgacaaga ccgaccaata ctgggcgcgt tcacgtgtac ttgaatacct
     2581 gaaccaagta cagagcaggc tcccccaagg cgcgagcgtc tcgcttggcc cggatgcaac
     2641 cggcgtcggt tgggtctatg aatacgcgct cgtcgatcgc accggcaagc acgaccttgg
     2701 tcaacttcgt gcgctgaacg actggtttct caagttcgaa ctgaaggccg ttcccgatgt
     2761 gtcggaggtc gcgtctatcg ggggaatggt gcggcagtat caggtcgtac tcgatccgga
     2821 caagcttcgc gcctatggca tcacgcaggc gacagtgacg gatgcgctca agaaagcgaa
     2881 ccaggaatca ggcggttcgg ttgtcgagct ggcggagtcc gactacatgg tgcgttcgtc
     2941 gggttatctg cattcgctcg atgacttccg caacgttgtc ttgcgcacca ccgacgcggg
     3001 gacacccgtg ttgctaggcg acgtcgcgcg aatccagatc ggacccgaga tgcggcgtgg
     3061 cattgccgag ttgaatggcg aaggcgaggt cgctggtggc gtgatcgtga tgcgctcagg
     3121 caagaatgcg ctcacgacca tcgaggccgt gaaagcgaaa ctcgatacgc tgaagaagtc
     3181 gctgcctccc ggcgttgaag tcgtcacgac ctacgataga tccaagctga tcgaacgtgc
     3241 tgtcagcaat ctgcgagaca aactgatcga ggagtttgtc atcgtcggcc tggtttgtgc
     3301 gctgtttttg ttccatctgc gaagtgcttt tgtcgccatc ttgtcgttgc cgctgggtgt
     3361 gctcgcagca tttatcgtga tgcgctatca gggcgtcaac gcgaacctga tgtcgctcgg
     3421 cggcattgcg atcgcgatcg gcgcaatgat cgacgccgcc atcgtgatga tcgaaaatgc
     3481 gcacaagcat ctggaagctt ttgaccacgc gcatcccgat caaccgatca ccgcattcga
     3541 gcgatgggag ctcatagcga catcggcggc agaggtcggg cctgcgctgt tcttctcgct
     3601 gctcatcatc acgatgtcgt tcatcccggt gttctcgctt gagggccaag aggggaaatt
     3661 gttctcgccg ctggcgttca ccaagagcta cacgatcgct gcggctgcgc tgttgtcggt
     3721 cacgctggtg ccggtgctga tgggttattt catcaggggc cgtattccga acgagaacgc
     3781 caatccgatc aaccgcgtgc tgatccggtt atatcggcca ttgcttgaag cgacgctgcg
     3841 ccggccgtgg gctgcgattg gtatcgcggt catcgcgctt gtgctcacgc tgattccgtt
     3901 gtcgcggcta ggcggcgaat ttctgccgcc actcgacgaa ggcgatcttc tctacatgcc
     3961 cactgcgttg cccggtatct cggccgagaa ggcgtcagag ctattgcagc agactgaccg
     4021 gctgatcaag acggtacccg aagttgcgac tgtattcggc aaatccggta gagcggatac
     4081 cgcgaccgac cccgcgcccc tggagatgtt cgagaccacc atccagttca agccgcgcag
     4141 ccaatggcgg ccgggcatga caccggaaaa gctggtcgat gaactggacc ggacggtgaa
     4201 ggtgcctggg ttgtcgaacg tatgggtgcc accgatacgc aaccggctcg acatgctgtc
     4261 gacaggtatc aagacgccgg ttggtgtgaa gatttcgggc ggcgagctga gcgtgatcga
     4321 ctccatcgca acgcaagtgg aagccgtgat caagacggtg ccgggggtct cctccgcgct
     4381 tgccgagcgt ttgaatggcg ggcgttatat cgatgtcgat atcgatcgcc tgaaggccgc
     4441 gaggtacgga ctcgctgttg cggatatcca gtcggttgtt tcatcggcgg tgggcgggga
     4501 gaacgtgggc gaagtcattg atgggcgtca acgctttccc atcaatgtcc gatatccgcg
     4561 cgccgttcgt gactcgctcg aaaatcttcg gcgcttgccg gttgttacgg agcgggacgc
     4621 gcagatcatg ctcggcgatg tcgccgactt aagtattgcc gatggacctc ccatgattcg
     4681 cagcgagaac gcacggcttg cgggctatgt gtacgtcgat atccgcgata ccgacctcca
     4741 gtcggcggtg acagcgatgc aacgcgtggt cgcggagaag gtggttcttc ctgcgggcta
     4801 ttccattgca tggtcgggtc agttcgagta tctggagcgc gcatcggcca cgcttcgtac
     4861 cgtgattccg gtcacgctgg tgatcatctt cgtgctgctg ttcctgacct tcaattcggc
     4921 tgctgatgcg ttgctgctga tgtcgacggt tccgttcgca ctcgtcggcg ggttctggct
     4981 gatatgggca ctgggtcacg cggtgtccgt cgcaaccgcg gttggtttca tcgcgcttgc
     5041 gggtgtggcg gcggagtttg gcgtggtgat gttgctgtac ctgaaacgtg cgcttgagca
     5101 tcgcctcgac gcgggcgctg tactcacgga ggcgcttctc ttcgacacca tccgcgaagg
     5161 cgccgtgctg cgcgtgcggc ccaaagcaat gaccgttgcc gtggtcctcg cgggtcttat
     5221 cccgatcatg ctcggccatg gcgcggggtc ggaagtgatg cagcgcatcg cggctccgat
     5281 ggtcggcggc atggtcaccg caccgctgct gtccatgttc gttatccccg ctgcgtggtt
     5341 gttgcttaag cgtcgccaag tgcggcgcgc agcgcaagcg cgtagcgaat tcgatggtcc
     5401 tcccggcacg catgtgcctt cgcatgttcc ttctattcac actggagaaa tgaaatgact
     5461 aaactgactt acgtcgcgtt cgcaatgggt gttgcggtca ctgtatttgc tgttca
//
LOCUS       DATGBK010000058         1942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_231926, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000058 DATGBK010000000
VERSION     DATGBK010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231926"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1074
                     /locus_tag="VKJ77_00845"
     CDS             <1..1074
                     /locus_tag="VKJ77_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HMC43850.1"
                     /translation="LMLEYGLATSAVSVGWSGYLQSLLSGFGISLPMALTAAPGAVPG
                     HFTLFNLPAFLVMMAITSLLSIGIKESARVNNVMVAIKVAVVLMVIGVGVFHVTPANW
                     RPFMPNGWNGVFGAAAVMFFAFIGFDSVSSAAEEVKNPKRDLPIGIISSLAVCAVLYV
                     AVAAVVTGIVPAAQFANVSHPVSYALQVVGQTWVAGFIDLGAVLGMLTVILVMSYGQT
                     RIIYAMSRDGLLPARLSKVHPKFGTPFFTTWLVGLFFGLIGALVPLNVLAELINIGTL
                     AAFSMVSIAVLILRRTHPDLPRAFRCPGVPVVPVLAVLACLFLMLNLKAVTWIAFVVW
                     LAIGLAIYFGYSRWHSKLGRGVE"
     gene            1345..1821
                     /locus_tag="VKJ77_00850"
     CDS             1345..1821
                     /locus_tag="VKJ77_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013586858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC43851.1"
                     /translation="MALSISLTVNGKAVTATVEPHILLVQFLREELGLTGTHIGCDTA
                     QCGACTVHLDGRAIKSCNILAVQADGSSVTTIEGMAKDGELHPMQAAFKECHGLQCGF
                     CTPGMVMSATSLAAQKPDLTEADVREQLDGNLCRCTGYHNIVKAIVQGAQAMKAAP"
BASE COUNT          325 a          579 c          616 g          422 t
ORIGIN      
        1 ctgatgctgg aatacgggct ggcgacctcc gccgtgtcgg tcggctggtc gggttatctg
       61 caatcgctgc tgtcgggctt cggcatttcg ttgcccatgg cgctgacagc ggcgcccggt
      121 gccgtgcccg ggcatttcac gttgttcaac ctgcccgcgt ttcttgtcat gatggcgatc
      181 acgtccctgc tgtcgatcgg tatcaaagag tccgcgcgcg tgaacaacgt gatggtcgcg
      241 atcaaggtcg cggtcgtgct gatggtgatc ggcgtcggcg tgtttcacgt cacgcccgcg
      301 aactggcgtc cgttcatgcc gaatggctgg aacggcgtgt tcggtgcggc ggctgtgatg
      361 ttctttgcgt ttatcggctt cgactcggtg tcgtcggcgg cggaagaagt gaagaatccg
      421 aagcgtgact tgccgatcgg cattatttcg tcgctggcgg tttgcgccgt gctttacgtg
      481 gcggtggccg ccgtggtgac ggggattgtt ccggcggcgc agttcgccaa tgtctcgcat
      541 ccggtgtcgt acgcgctgca ggtcgtgggg caaacgtggg tggcgggttt catcgatctg
      601 ggcgcggtgc tcggaatgtt gaccgtgatc ctggtgatga gctacggcca gacccgcatc
      661 atctacgcga tgtcccgcga tggcttgttg cccgcgcggc tgtcgaaggt gcatccgaaa
      721 ttcggcacgc cgttctttac gacgtggctc gtgggtctgt tcttcgggct gatcggtgcg
      781 ctcgtgccgc tcaacgtgct ggcggaactg atcaatatcg gcacgctggc cgcgttttcg
      841 atggtgtcta ttgcggtgct gattttgcgc cgtacgcatc ctgacttgcc gcgcgcgttt
      901 cgttgcccag gcgtgcccgt cgtgccggtg ctggcggttc tggcttgcct gttcctgatg
      961 ctgaatctga aggccgtgac gtggatcgcg ttcgtggtgt ggctggcaat cgggctggcg
     1021 atctatttcg gctattcgcg ctggcattcg aaactggggc gcggggtgga gtgacacgcg
     1081 gaggttgaac ctagccgctt aagccgcacg ccgcccatcg aggcggcgtt tttacgaccg
     1141 ctttccgcga gacgcgcccc cgcaaccctc tgtccccacc cgcctttagc ccaatagcga
     1201 cgcttttcgt tttgtgcttt actaagtgct acaacaaata aacacgaacc cagccagaca
     1261 ctcacactcg tgaagtccgc aaggccagtg aaacaaaagc ggtgagtgag cttcggctgt
     1321 ttatcccccg aaggagacag aagcatggcg ctcagcatca gtctgacggt caacggtaaa
     1381 gccgttaccg ccaccgtcga accccacatc ctgctagtcc agtttctccg tgaggagttg
     1441 ggtctcacgg gcacgcacat aggttgcgat accgcgcagt gcggcgcatg caccgttcac
     1501 ctggatggcc gcgcgatcaa gtcgtgcaat atcctcgccg tgcaggcaga cgggtcgtcg
     1561 gtgacgacta tcgaagggat ggcgaaggac ggtgaactcc atcccatgca ggcggcgttc
     1621 aaggagtgcc acggcctgca gtgcggcttc tgtacgcccg gcatggtgat gagcgcaacc
     1681 tccctcgccg cgcaaaagcc cgatctcacc gaagccgatg tccgcgaaca actcgacggc
     1741 aatctctgtc gatgtacggg gtatcacaac atcgtgaaag ccatagtgca gggcgcgcag
     1801 gccatgaagg ccgcgccctg agggccgcgc cctgagccgc cgcccgcgct tccagcaaag
     1861 cctcaccgaa gccgcactca cctttccgat gaagattcgc gcctgaacag gagtccgcga
     1921 tgaacgcccc tgaaacaccc ga
//
LOCUS       DATGBK010000059         2382 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_162798, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000059 DATGBK010000000
VERSION     DATGBK010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162798"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..628
                     /locus_tag="VKJ77_00855"
     CDS             <1..628
                     /locus_tag="VKJ77_00855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HMC43852.1"
                     /translation="RLFQYLTVQVSEMFRDPLYFRAIREQVVPILQTYPSIKVWVAGC
                     SSGEELWSLAILFAEENIVDRTVLYATDINADALRQAESGIYPLDRLASFSQNYLAAG
                     GKRSLSDYYHAAYGAAKFSQTLKSRVVFADHSLATDSVFLEAHLVSCRNVLIYFDRAL
                     QDRALGLFSDSLVRRGFLGLGSKESLRFSKHAGSFADFDARERLYQKV"
     gene            631..1239
                     /locus_tag="VKJ77_00860"
     CDS             631..1239
                     /locus_tag="VKJ77_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HMC43853.1"
                     /translation="MTPSTDSLDAIEAIVIGASAGGIEALNHILPALPANFRPAVLVV
                     VHVRSESPSLLPALFSARCQLPVVEPDDKDEIAGGTIYLAPPGYHMLVEPDCTISLSV
                     DPPVRFSRPSVDVLFESAALCFADTLLGVVLSGANDDGARGLVAISRAGGRCWVQDPH
                     TAVANAMPLGAIARGGVHDILTLDVMVARLARMAAGPRREPG"
     gene            1272..>2382
                     /locus_tag="VKJ77_00865"
     CDS             1272..>2382
                     /locus_tag="VKJ77_00865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HMC43854.1"
                     /translation="MEHIRQSVRQPLRPPIYVLIVDDVQNNITALEASLARPDISVLA
                     ASSGPAALELLLKHEVALAILDVNMPGMDGFELAELMRGSPRTAHVPIIFLTATAQDT
                     GRTFRGYEAGAVDFLYKPYDSRILNSKVDVFIQIEKQKQQLATQLATVQQLLDANEML
                     MAVLGHDLRTPLSAVIASAEYLARFVPDENVANIGTRIKGSGMRMVRMVDQLLNLARL
                     RGGRVTLQPRAVELMTLAKNIVEEYEARVGKGRIFIFRDGDTLLQGDGDLLSQVFSNL
                     IGNALTHGRDGSVIQVRLNGDAADDVLISVQNAGEIPIDVLPTIFAPYRSGRPQQETG
                     GLGLGLYITREIAQMHGGRVEVRSDAENGTIFEVTL"
BASE COUNT          415 a          703 c          777 g          487 t
ORIGIN      
        1 gcgcctgttt cagtacctga cggtgcaggt cagcgagatg ttccgcgacc cgctgtattt
       61 ccgcgccatc cgcgaacagg tcgtgccgat cctgcagacg tatccgtcca tcaaggtgtg
      121 ggtggcgggg tgcagcagcg gcgaggaact gtggtcgctc gcgattctgt tcgctgaaga
      181 gaatattgtg gaccgtacgg ttttgtacgc caccgatatc aatgccgacg ccttgcgcca
      241 ggccgaaagc ggtatttacc cgctggatcg gctggccagt ttcagccaga attatctggc
      301 ggccggcggc aaacgctcgc tctccgacta ctaccacgcg gcctacggcg cggcgaaatt
      361 ttcgcagacg ctcaagtcgc gcgtggtgtt cgccgatcac agccttgcca ccgacagcgt
      421 gtttctcgaa gcgcatctgg tgtcgtgccg caacgtgctg atctatttcg accgtgcgct
      481 gcaggaccgt gcgctgggtc ttttcagcga ttcgctggtg cggcgcggat ttctcgggct
      541 gggcagcaaa gagagcctgc ggttttcgaa acacgcaggc agcttcgccg atttcgatgc
      601 gcgcgagcgt ttgtatcaaa aggtctagcg atgacaccgt cgactgattc cctggatgca
      661 atcgaagcca tcgtgattgg cgcatcggcg gggggcatcg aagcgctgaa tcacatcctg
      721 cctgcgctgc ctgccaattt tcgccctgcc gtgctggtcg tcgtgcatgt ccggagcgag
      781 tcgcccagcc tgctgcccgc gttgttttcc gcgcgttgcc agttgccggt cgtcgagccc
      841 gacgacaagg acgagatcgc cggcggcacg atctatcttg cgccgccggg gtatcacatg
      901 ctggtcgaac ccgactgcac gatctccctt tccgtcgatc cacccgtgcg gttttcgcgg
      961 ccgtcggtgg atgtgttgtt tgaatcggcg gcgctgtgtt ttgccgatac gctgctcggc
     1021 gtcgtgcttt ccggtgccaa cgacgacggc gcgcgggggc tggtcgcgat ctcgcgggcg
     1081 ggtgggcgct gctgggtgca agacccgcat accgccgtgg ccaacgccat gccgctaggc
     1141 gccatcgcac gcggcggcgt gcacgacatt ctcacgctcg acgtcatggt tgctcgcctg
     1201 gcgcgcatgg ccgcgggccc gcgccgcgaa cccggttgac ttggagccga cacgctaatg
     1261 gaactccgct aatggaacac atcaggcaat ctgtcaggca gccgctcagg ccgcccattt
     1321 acgtcctgat cgtggatgat gtgcagaaca acatcactgc gctggaagcg tcgttggcgc
     1381 ggccggacat ctcggtgctt gcggcgagct cggggccggc ggcgctcgaa ctgttgctca
     1441 agcacgaagt cgcgctcgcc atcctcgatg tcaacatgcc cggcatggac ggcttcgaac
     1501 tggctgaact gatgcgcggc agcccgcgca ccgcgcatgt gccgatcatc ttcctgaccg
     1561 cgaccgcgca ggacaccggg cgcacgtttc gcggttatga agcgggcgca gtggacttcc
     1621 tgtacaagcc gtacgactcg cggatcctga attcgaaggt ggatgtgttc atccagatag
     1681 agaagcagaa gcagcagctc gccacgcaac tggcgaccgt ccagcaactc ctcgacgcca
     1741 acgaaatgct catggccgtg ctcggccacg atctgcgtac gccgttgtcg gcggtgattg
     1801 catcggcgga atatcttgct cggttcgtgc cggatgagaa cgtcgcgaat atcggcacgc
     1861 gcatcaaggg cagtggcatg cggatggtgc gcatggttga ccagttgctc aatctcgcac
     1921 ggctgcgcgg tgggcgcgtg acgctgcagc cgcgggcagt ggagttgatg acgctggcga
     1981 agaatattgt tgaagaatac gaggcgcggg tggggaaggg ccgcatcttc attttccgcg
     2041 atggcgatac gctgttacag ggcgatggcg atctgctgtc gcaggtgttt tcgaatttga
     2101 tcggcaacgc gctgacgcac gggcgtgacg gctcggtcat tcaggtgcgt ttgaacggcg
     2161 acgcagccga cgacgttctg atcagcgtgc aaaacgcagg cgagattccc atcgatgtat
     2221 tgccgaccat ttttgcgccg tatcgatcgg gaaggccgca gcaggaaacc ggcgggctgg
     2281 ggcttgggct ttacatcacg cgtgagattg cgcagatgca cggcggacga gtagaagttc
     2341 gctccgacgc ggagaatggc acgatattcg aagtgacgtt gc
//
LOCUS       DATGBK010000060         2233 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_208979, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000060 DATGBK010000000
VERSION     DATGBK010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2233
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208979"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..810)
                     /locus_tag="VKJ77_00870"
     CDS             complement(<1..810)
                     /locus_tag="VKJ77_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC43855.1"
                     /translation="MFEENRANVPLAERLRPRTIDEVIGQKHLLGASKPLRVAFESGE
                     AHSMILWGPPGVGKTTLARLMAAAFHAEFISLSAVLSGVKDIREAVELAQIHRANGHQ
                     TLVFVDEVHRFNKSQQDAFLPHVESGLFVFVGATTENPSFEVNSALLSRAAVYVLKSL
                     EASELTELLDRAQGELGGLTFTDEARDALIGSADGDGRKLLNNLEIVARAAVQQKSTH
                     IDGALLGSALAENLRRFDKGGDAFYDQISALHKSVRGSNPDATLYWFCRMLD"
     gene            1068..>2233
                     /gene="cytX"
                     /locus_tag="VKJ77_00875"
     CDS             1068..>2233
                     /gene="cytX"
                     /locus_tag="VKJ77_00875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HMC43856.1"
                     /translation="MGQGNTTGNTSENTTGTTGETGASTYAPLLPVPAARRAFGTSDA
                     FALWFSLGIGLLVAQAGALLVPGMSLPHALAAIVIGTVIGVVLLALAGVVGTDTGLAA
                     MSSLRPTLGTRGASVPAVINAVQLVGWGSFEIIVMRDSADALAKQSFGLSMPLIWTLI
                     FGVLATTLAITGPLSFVRRFLRTWGIWLLLGGAGWLTWNLLSKQDFGALMARPGTGDM
                     PFGAGIDLVVAMPLSWLPLIADYTRFGSSAGGTFRGTLFGYGIANIWFYALGAFYGLA
                     AGGGDALLTVALAQAAGGIALLLILIDEIDNAFADMHSAAVSTGTLWAKASVPLLSAA
                     FGALCTLIALLVQMGKYQNFLLLIGSVFAPLFGVVLVDHFIVRKRRVEIAALSDP"
BASE COUNT          393 a          707 c          697 g          436 t
ORIGIN      
        1 atccagcatt cgacaaaacc agtaaagcgt cgcgtccgga ttactgcctc gcacagattt
       61 atgcagcgcg ctgatctggt cgtagaacgc gtcgccaccc ttatcgaaac gacgcagatt
      121 ctcggcgagc gcgctgccga gcaacgcgcc gtcgatatgc gtcgatttct gctgcaccgc
      181 cgcccgcgcg actatctcca aattgttgag cagcttgcgg ccgtcgccat cggcggaacc
      241 gatcagcgcg tcgcgggctt catcggtaaa tgtgaggccg cccagttcgc cctgcgcacg
      301 atccagcaac tcggtgagct cgctcgcctc gaggcttttc agcacgtaaa cggccgcccg
      361 cgacagcaac gcgctgttca cctcgaacga tggattctcg gtcgtcgcgc ccacgaacac
      421 gaacaggccc gactccacgt gcggcaagaa cgcgtcttgc tgactcttgt tgaagcgatg
      481 cacttcgtca acaaacacca gcgtctgatg cccgttcgcc cgatgaatct gcgccagttc
      541 gaccgcctcg cgaatgtcct tcacgcccga cagcaccgcc gacagcgaga tgaattcagc
      601 gtgaaacgcc gccgccatca accgggcgag cgtggtcttg cccacgcccg gcggccccca
      661 gaggatcatg gaatgcgctt cgccggactc gaacgcgaca cgcagcggct tgctggcgcc
      721 gagcaggtgt ttctggccga tgacctcgtc gatagtgcga ggacgcagac gctcggcaag
      781 cggaacattg gcacggtttt cttcgaacat ggcgctctgg agggtttccg gataggtctg
      841 ggtagatctg gacaatgcgt ctgaatactg cgcaatctgg gcaaacacag cgataatcgt
      901 gcgcttttcg agacagacgc cgccgctgct tcaaaatgga tgtttcggct cgaaaaacgc
      961 gaaccgcgcc gcaacgggtg acgcactgag tgattatgac agccgcggac gaaccgaaga
     1021 aacgcgcatg aaccgggcca agccctacag atatggacga aacgcaaatg ggacaaggga
     1081 atacgacggg gaacacttcg gagaacacga ccggcacgac aggcgaaacc ggcgcatcga
     1141 cttacgcgcc acttctgccg gtccccgccg cgcgccgcgc gttcggcaca tcggacgcct
     1201 tcgccctgtg gttttcactg ggcatcggct tgctggtggc gcaggccggc gcgctgctcg
     1261 tgccgggcat gtcgctgccg catgcgctcg cggccattgt gatcggcacg gtgatcggcg
     1321 tggtcttgct ggcgctcgcg ggcgtagtgg gcacggacac gggcctcgcc gccatgtcgt
     1381 cgttgcggcc aacgcttggc actcgcggcg cgtccgtgcc cgcggtgatc aacgcggtac
     1441 aactcgtcgg ctggggctcg tttgaaatca tcgtgatgcg cgattccgcc gatgccctcg
     1501 ccaaacaatc attcggcctc tccatgccgc tgatctggac cttgatcttc ggcgtgctgg
     1561 cgacaacgct cgcgatcacc ggaccgttgt ccttcgtccg gcgcttcttg cgcacgtggg
     1621 ggatctggct gctgcttggc ggcgcgggct ggctgacgtg gaatctgctg tcgaaacaag
     1681 actttggcgc gctgatggcc cgtcccggca cgggcgatat gccgttcggc gcgggtatcg
     1741 acctggtggt cgcgatgccg ctttcgtggc tgccgctaat cgcggattac acgcgtttcg
     1801 ggagcagcgc cggcggcacg ttccgcggca cgctgttcgg ctacggaatc gcgaacatct
     1861 ggttctatgc gctcggcgcg ttctacggcc tggcggccgg cggcggcgat gcgctgctga
     1921 ccgttgcgct ggcccaggca gcgggcggga ttgcgctgct gctgattctc atcgatgaaa
     1981 tcgacaacgc cttcgccgat atgcattcag ccgccgtctc taccggcacg ctttgggcaa
     2041 aggcgagcgt gccattgctg tcggccgcgt tcggcgcgtt gtgcacgctg atcgcgctgc
     2101 tcgtgcagat gggcaagtat caaaacttcc tgttgctgat cggctcggtg ttcgcaccgc
     2161 tatttggcgt ggtgctggtg gatcacttta tcgtgagaaa acgtcgcgtt gaaatcgccg
     2221 cactcagcga tcc
//
LOCUS       DATGBK010000061         1604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_232030, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000061 DATGBK010000000
VERSION     DATGBK010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232030"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VKJ77_00880"
     CDS             complement(<1..341)
                     /locus_tag="VKJ77_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004522729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC43857.1"
                     /translation="MGRVNLDMDVLRTLVTAHELGSFNRAADRLGRSQSAISQQIRKI
                     EAQVGEPLFQKQGRGLALTTAGELVLAYARRILDLNDEAVSAVRGFAIDGIVRVGLPA
                     DFAETWLPEVLG"
     gene            443..>1604
                     /locus_tag="VKJ77_00885"
     CDS             443..>1604
                     /locus_tag="VKJ77_00885"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43858.1"
                     /translation="MTPQTVRLYGVSIATAKIGTGFFFLINTWLVIGITGRPSSAAIS
                     LVMTVLPGLLLSPIIGLALDRCQPARLACQADLLRWIVLVGYGLLYAAGWATAQAAYA
                     VSFLIALGNEIQVLSWRTAVAREASPEQLFRLNALTVVTGQTGQILGAAASGIVLAAI
                     GAAATVGVASTTYLLAALCGFVVARRMRVVEFGPRAPVSGAKKHLGDLRAGMRHISER
                     PEIAFFYGLMLANMTMIFGINAMLAPFVREELRLGADAFGKIDAGYALGAIISGLFVV
                     RLADRFGRRTILVMGFLVAASSLFAFAQCGEFLAAFVAYVGLGVSFQSSVIALSAAQR
                     ATDPHYQGRVTASFNALNGAAGLLIYGVVAISAGHHLYRQLYVCQAAAMLILI"
BASE COUNT          284 a          483 c          476 g          361 t
ORIGIN      
        1 ccaagaacct ctggcaacca ggtctccgcg aaatcggcgg gaagacccac acgcacgatg
       61 ccatcgatgg cgaacccgcg aactgctgac accgcttcgt cgttgagatc cagaattcga
      121 cgggcgtaag caagcaccaa ttcacccgcc gtagtgagcg cgagaccacg gccttgcttc
      181 tggaaaagcg gctcgccaac ctgcgcctca atcttgcgaa tctgctggct gatggccgac
      241 tgcgagcggc cgagccgatc cgccgcccga ttgaagctgc ccagttcgtg agcggtcacc
      301 aacgtgcgaa gcacgtccat atcaagattt acgcgaccca tagttcagtt ttacgaaagt
      361 atcgaataag aattatcgaa ttttcttatt attctagagc gcttagtgtc tgcacatcga
      421 gatttctgca gagacggccc gcgtgacacc acaaacagta cgcctctatg gcgtgtcaat
      481 cgccacggcc aaaatcggca cgggcttctt cttcctgatt aacacctggc ttgtcatcgg
      541 catcacgggc cggccgtcga gtgccgcgat ctccctcgtg atgacagtcc ttccgggctt
      601 gttgctgtcc cccatcatcg gtttggcatt ggaccggtgc cagccggcac ggctagcatg
      661 tcaggctgac cttctgcgct ggatcgtatt ggtaggctac ggcctgctat atgccgcagg
      721 ctgggcgacg gctcaggccg cttacgcggt cagctttctt atcgcgctcg gaaatgaaat
      781 ccaggtcctg tcgtggcgga ccgcggtcgc tcgcgaggcc tcgcccgaac aattgttccg
      841 tctgaacgcg ttgaccgttg tcacgggaca gacggggcag atactagggg ctgccgcgtc
      901 cggtatcgtg cttgcggcca tcggtgcggc cgcgacggta ggtgtcgcca gcacgaccta
      961 tctgctcgcc gcgctatgcg ggtttgtcgt tgcgcggcga atgcgcgtag tggagttcgg
     1021 cccgcgcgcg cccgtgagcg gtgccaaaaa acatttgggc gatttgcgtg cgggcatgcg
     1081 ccatataagc gagcgcccgg agatcgcatt tttctacggg ctcatgctcg caaacatgac
     1141 gatgatcttc ggcatcaacg ccatgctggc gccgtttgtg cgcgaagagc ttcgtcttgg
     1201 cgccgacgct ttcggcaaga tcgatgcggg ctatgcgctg ggcgcgatca tcagcggcct
     1261 gtttgttgtc cggcttgctg accgattcgg tcgccgcact atccttgtca tgggctttct
     1321 cgtcgctgcg tccagtctgt tcgcctttgc gcaatgcggg gaatttctcg ctgcgttcgt
     1381 ggcttatgtc ggactgggcg tgagtttcca gagcagcgtc atcgcgctca gcgcggcgca
     1441 gcgcgccacc gatccgcact atcaggggcg tgtgaccgcg agcttcaacg cgcttaacgg
     1501 cgctgccggt ttgctgattt atggcgttgt tgcaatcagt gccggacatc atctgtatcg
     1561 ccagctttac gtctgccagg cagcagcgat gctgatcctc attc
//
LOCUS       DATGBK010000062         3398 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_47186, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000062 DATGBK010000000
VERSION     DATGBK010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3398
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47186"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..1006
                     /locus_tag="VKJ77_00890"
     CDS             119..1006
                     /locus_tag="VKJ77_00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HMC43859.1"
                     /translation="MTPASIDETLAALSGQQYFASRELATGLFLALKMQRPLFLEGEP
                     GVGKTELAKAAAGFLGTQMLRLQCYEGLDTASALYEWDYPRQIMALRLAEAAGEQPSN
                     DSLYKSEFLLKRPLLQALMPDPLNPGAQRVLLIDEIDRADEPFEAFLLELLSDFQVSI
                     PEYGTVRAERPPLVVMTSNRTREVHDALKRRCLYQWIGYPARDVELQIVAARAPEASA
                     ELQARAVAFVHRLRTLDLFKAPGVAETIDWCRALTALSVSELDPQSVQDTLGVLLKYQ
                     DDLARVDAAEIAQCLAAPA"
     gene            1013..2215
                     /locus_tag="VKJ77_00895"
     CDS             1013..2215
                     /locus_tag="VKJ77_00895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HMC43860.1"
                     /translation="METPTLAHNVVHFVRLLRGAGLAMSPAHSVDALEALHWIDITRR
                     DDVRAALAALLVHAPDERELFHQAFDLFWRDPDWEGKLRALLLPKVTNGVPPPKRNNR
                     LADALAARAAALNAVNKQPDNVEHLHARITFSAQERLSHRDFDTLTSDEWRALRHQIR
                     SHRMPLATEPTRRLKTASHGTHADLRASARSAVRSGGDWTTWKYKKVVERRPPLVLLL
                     DISGSMSAYSRAVLYFCHALLQSRERLQVFLFGTRLTNATRALRERDPDVAIAAISDQ
                     VVDWSGGTRIGAALAEFNRRWARRVLNGRATVLFVTDGLDHEAIDVLETEMLRLRRFA
                     HRLVWLNPLLRYTDFTPRARGVRAILPHVDAMLAAHNLDSLNAVGRELAAVTRRADRK
                     SAGDTSWN"
     gene            2206..2751
                     /locus_tag="VKJ77_00900"
     CDS             2206..2751
                     /locus_tag="VKJ77_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon monoxide dehydrogenase subunit G"
                     /protein_id="HMC43861.1"
                     /translation="MELTETHNLPVPQNVAWAALNDTEILRACIPGCESIEADGENAY
                     AVAMTASVGPVKAKFKGRMNLVDIDAPHTYTIVFEGQGGTAGFGKGQAKVNLEPGDNA
                     DSTTLSYTANAQVGGKLAQIGSRLVDGAARKIAGEFFKRFSAQLTKADEPEGEPDSAA
                     ADGEGEEKKRKRSWTAWISKS"
     gene            2724..>3398
                     /locus_tag="VKJ77_00905"
     CDS             2724..>3398
                     /locus_tag="VKJ77_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HMC43862.1"
                     /translation="MDSVDLEVLRNSARWLERGHRVLLVTVVKTCGSSPRPEGAMLAV
                     RDDGAVMGSVSGGCIEDDLIERVRQRGIEQTKPESVKYGISAEEAHRFGLPCGGTIQL
                     VLEPLSMASGIADLCDAVLAGRLVTRTLDMTNGAVKLEPAQATDGVTFDETTLSTIHG
                     PRYRMLVIGAGQLSRYLCSIAVGLDYHVTVCDPREEYTDEWDVPGTKIVRTMPDDTVM
                     EMKLDER"
BASE COUNT          677 a         1003 c         1097 g          621 t
ORIGIN      
        1 ataaagagaa aatccgactc acgcagaccg ctaacgccga aagcagcaac ccggcactga
       61 ccccgaccac cgaccaacca aagccccccc aaacccgtcc accggcgcga gcaaatccat
      121 gaccccggca tcgatcgacg aaaccctcgc ggccctgagc gggcagcaat acttcgccag
      181 ccgcgaactc gcaacagggc ttttcctggc gttgaaaatg cagcgtccac ttttcctcga
      241 aggtgaaccg ggtgtcggca agaccgaact ggcaaaagcg gccgccggtt tcctcggcac
      301 gcaaatgctg cggctgcaat gctacgaagg tctcgacacc gccagcgccc tctacgaatg
      361 ggactacccg cgccagatca tggcgctgcg gcttgccgag gcggcaggcg aacaaccatc
      421 gaacgattcg ctctataaaa gcgaattcct cctcaagcgc ccgctgctgc aagcgcttat
      481 gccggacccc ttgaatccgg gcgctcaacg cgttctgctc atcgatgaaa tcgatcgcgc
      541 cgatgaaccg ttcgaagctt tcctgctcga gttgctgtcg gatttccagg tgtcaattcc
      601 cgagtacgga accgtgcgcg ccgagcggcc gccgttggtc gtgatgacat cgaatcgcac
      661 gcgcgaggtc cacgacgcgc tcaagcggcg ctgtttatat caatggatcg ggtatccggc
      721 tcgcgatgtg gaactgcaga ttgtggcggc gcgtgcgccc gaagccagcg cggagctgca
      781 ggcgcgtgcg gtggcgtttg tgcatcggct gaggacgctc gatttgttca aggcgccggg
      841 cgtggcggag accatcgact ggtgtcgagc gctgacggcg ctttctgtca gtgaactcga
      901 tccgcaatcg gtgcaggaca cattgggcgt actgctgaag taccaggacg atctcgcgcg
      961 cgtggacgcc gccgagatcg cgcagtgcct cgccgcaccg gcctgaacga acatggaaac
     1021 gccaacgctc gctcacaatg tcgtgcattt tgtgcgattg ctgcgcggcg cgggcttggc
     1081 gatgtcgccg gcgcacagcg ttgatgcgct cgaagcgttg cactggatcg atatcacccg
     1141 tcgcgacgat gtccgcgccg cgctcgccgc gctactcgtt catgcgcctg acgagcgcga
     1201 actctttcat caagccttcg atctgttctg gcgcgatccc gattgggaag ggaagctacg
     1261 cgcgctattg ctgccgaaag tgacgaacgg cgtgccgcca cccaagcgca acaaccgcct
     1321 cgccgatgcc ctcgccgcac gcgcggctgc attgaacgcg gttaacaagc agccggacaa
     1381 cgttgaacac ctccacgcgc gcatcacgtt cagcgcgcag gaacgcctga gccatcgcga
     1441 tttcgacacc cttacatccg atgaatggcg tgcccttcga catcaaattc gttcgcatag
     1501 aatgccgctt gccacggagc cgacacggcg cttaaaaacg gcatcgcacg gcacacacgc
     1561 ggatctgcgc gccagcgccc gtagcgccgt gcgctcgggc ggcgactgga cgacgtggaa
     1621 gtacaagaag gtcgtcgagc gccgcccacc gcttgtcctg ctgctcgaca tttccgggtc
     1681 gatgagcgcg tattcccggg ctgtgcttta cttctgccat gcattgttgc aatcgcgcga
     1741 acgcctgcag gttttcctgt tcggcacgcg cctgaccaac gccacgcggg cgttgcgcga
     1801 acgcgatccc gacgtcgcga ttgccgcgat ctccgatcag gtggtcgact ggtcgggcgg
     1861 cacgcggatc ggcgcggcgc tggctgaatt caaccggcgc tgggcgcggc gggtgctcaa
     1921 cggtcgcgcg acggtgttgt tcgtcacgga cggtctcgat cacgaagcaa tcgatgtcct
     1981 tgagaccgag atgctccgtt tgcggcgctt tgcgcatcgg ctggtgtggc tcaatccgtt
     2041 gcttcgatac accgatttca ccccgcgcgc gcggggcgtg cgggcgatcc tgccgcatgt
     2101 cgatgcgatg cttgcggctc acaacctcga cagcctgaac gctgtcggcc gggagctggc
     2161 ggcggtgacg cgtcgagcgg accggaaatc agccggagac acgtcatgga actgaccgaa
     2221 acgcataatc tgcccgtgcc gcagaatgtc gcgtgggcag cattgaacga taccgaaatc
     2281 ttgcgcgcgt gcattccggg ttgcgaaagt atcgaggccg atggtgaaaa cgcgtatgcg
     2341 gtggccatga cggcgtcggt cggacccgtg aaagcgaaat tcaaaggacg catgaatttg
     2401 gtggacatcg atgccccgca cacgtacacc atcgtgttcg aagggcaagg tggaacggct
     2461 ggtttcggca aggggcaggc gaaggttaac cttgaaccgg gcgacaatgc ggattcgacg
     2521 acgttgtcct atacggcgaa cgcgcaggtg ggcggcaagc ttgcgcagat cggctcgcgg
     2581 ctggtggacg gcgcggcgag gaaaattgcc ggcgagtttt tcaaacgttt cagtgcgcag
     2641 ttgacgaagg ccgatgaacc tgagggtgag cccgattcgg cggctgcgga cggtgaaggc
     2701 gaagagaaga agaggaaaag atcatggaca gcgtggatct cgaagtcctg agaaacagcg
     2761 cgcgatggct cgaacgtggg catcgcgtgt tgctggttac agtagttaag acgtgtggct
     2821 cgtcgccccg gccagaaggc gcgatgcttg ccgtgcgcga tgacggcgcg gtgatgggat
     2881 cggtgtcggg cgggtgcatt gaagacgatt tgatcgaacg cgtcaggcag cgcggcatcg
     2941 agcagacgaa gcctgagagc gtgaaatacg gaatctcggc ggaagaagcg catcggttcg
     3001 gactgccttg cggcgggacg attcaactgg tgcttgaacc attgtcgatg gcgagcggta
     3061 ttgctgactt atgcgatgcc gttctcgccg ggcggctggt aacgcgcacg ctcgatatga
     3121 ccaatggcgc ggtcaagtta gagccagcgc aggcaacgga tggcgttaca ttcgatgaaa
     3181 ccacactctc gactattcac ggcccgcggt atcggatgct ggtgattggc gcggggcagt
     3241 tgtcgcggta tttgtgcagt atcgcggtcg ggctggatta tcacgtgacg gtttgcgatc
     3301 cgcgcgagga gtacaccgac gagtgggatg tgccggggac gaagatcgtg cgcaccatgc
     3361 ccgacgatac cgtgatggaa atgaaactcg atgagcgt
//
LOCUS       DATGBK010000063         1855 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_930, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000063 DATGBK010000000
VERSION     DATGBK010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1855
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_930"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..256
                     /locus_tag="VKJ77_00910"
     CDS             <1..256
                     /locus_tag="VKJ77_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007859112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="KR domain-containing protein"
                     /protein_id="HMC43863.1"
                     /translation="AEVTRQSGKTVEYRNLSEADYKAALIEVGLPEVVAALLSDSDTG
                     ASKGALFDEGHQLSQLLGRPTTPLATVVAESARGVIAGFL"
     gene            complement(280..429)
                     /locus_tag="VKJ77_00915"
     CDS             complement(280..429)
                     /locus_tag="VKJ77_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43864.1"
                     /translation="MRTPDEMEEADEQSYVELRRSGAFFEFSGKGTTQRRRRIKRIVR
                     VGPSD"
     gene            623..>1855
                     /locus_tag="VKJ77_00920"
     CDS             623..>1855
                     /locus_tag="VKJ77_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase family protein"
                     /protein_id="HMC43865.1"
                     /translation="MPAALPPSSVRNPENRASIKRLTREHFALYRGYLDGVSVEQLHA
                     TYGDATTDIRATRRLIGLLRDTLSGAARRTRDVEATHLLRLRPGSIPDAQRLAASEMP
                     SLETYRESVDPNGFHSEAELLELYQAEFPQENGLGVDRRSSRNARLRRRQIDALARME
                     ASLVQAPQPDHPVASWLEPAIAGRLQDTGIHTLADLLGFIEQRGHRWYASVARVGPKA
                     ARRIVDWLALHADSLRHMLSKRALIPRRRLSSNDPALMRPRQSGIVPIESLAVPTEID
                     GSTGTNRARNRGLSCSLETDLQAIDAWLATRQHSPHTARAYRREAERLLLWAINEKKK
                     ALSSLDAVDCATYIGTFLADPQPAARWIGRAKIERTHLDWRPFVGTLSSRSRETARSI
                     LHAMGQWLIEQNYWAHNPF"
BASE COUNT          360 a          580 c          538 g          377 t
ORIGIN      
        1 agccgaagta actcggcagt ccggcaagac ggtcgaatac cggaatcttt cagaagcgga
       61 ctacaaggcg gcgctgatcg aagtcgggtt gccggaagtc gtggctgcgc tgctgtcgga
      121 ctcggatacg ggagcatcga agggcgctct cttcgatgag ggtcatcagt tgagtcaact
      181 gcttggccgg ccgactacgc ctctggctac cgtggtggcc gaaagcgctc gcggcgtaat
      241 cgcgggtttc ttatagctcg tagcgatggt gcgtgtgggt cagtcactgg gaccgacacg
      301 cacaattcgt ttgatgcgac gacggcgttg cgttgttcct ttgccgctga actcaaagaa
      361 cgctccgctg cgccgaagct cgacgtagct ttgttcatcg gcttcttcca tttcatctgg
      421 cgtgcgcacg tcggcgcttc agatttcact actccaccga atccatctca aaccgaatca
      481 ttacccgtca atcggcgcga cgacgcacgc ccatcacttt cgagcgttcg tatacttatc
      541 agatgtagcg ttttttgttg tcaaaccgcc tccacgctgg tagcctcgct ccaagctatt
      601 gaaacgaaag cataaataac tcatgccggc tgctttacca ccatcatccg ttcgcaatcc
      661 cgagaaccga gcctcaatca agcggcttac tcgtgagcat ttcgcgctct atcgcggata
      721 cctggatggc gtttcggtcg aacagctgca tgcgacttac ggcgacgcca ccaccgacat
      781 ccgggcgacc cgccgtctga tcggcctgtt gcgcgacacc ctgtcgggcg ctgctcgccg
      841 cacccgcgat gtcgaagcca cgcatctgct gcgactgaga ccgggcagca ttcctgacgc
      901 acagcggctg gcagccagcg agatgccatc gctggagacc taccgggaat ccgtcgatcc
      961 aaatggtttc catagtgaag ccgagcttct ggagctttat caggctgaat ttccgcagga
     1021 aaacggcctg ggcgttgatc ggcgctcaag ccggaatgcc cgcctgcgca gacgtcagat
     1081 cgacgccctc gctcgcatgg aagcaagtct ggtccaggcg ccgcagccgg accacccggt
     1141 cgcgagctgg ctcgagcccg cgattgccgg ccgtcttcag gacacgggta tccatacgct
     1201 cgccgacctc ctcggattca tcgagcagcg cggccaccgc tggtatgcaa gcgtggcgcg
     1261 tgtcgggcca aaggcggctc gccggatagt tgactggctt gctcttcacg ccgattcgct
     1321 gcgtcatatg ctgtccaaac gcgcgctcat tccgcgccgg cgcttgtcca gcaacgatcc
     1381 cgcgcttatg cggccgcgtc agagcggcat tgttccgatc gaatcactgg ctgtacccac
     1441 tgaaattgac ggatcgacag gtactaaccg ggcgcgaaac cgcggtttgt cgtgttcgct
     1501 ggaaacggat ctgcaggcaa tcgatgcgtg gctcgccact cggcaacaca gtccgcacac
     1561 cgcccgcgcc tatcgccggg aggccgaacg cctgcttctg tgggcaatca acgaaaagaa
     1621 gaaggcgctg tcgtcgctgg atgccgtgga ctgcgcgacg tatatcggga catttttagc
     1681 cgatccgcag ccagccgccc gctggatcgg acgagcgaaa atcgagcgaa ctcacctgga
     1741 ttggcggccg tttgtcggca ccctctccag tcgcagccgg gaaaccgcgc ggtcaattct
     1801 tcacgcaatg ggtcagtggc tgatcgagca gaactattgg gcgcacaacc cgttt
//
LOCUS       DATGBK010000064         1554 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_47231, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000064 DATGBK010000000
VERSION     DATGBK010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47231"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1369)
                     /locus_tag="VKJ77_00925"
     CDS             complement(<1..1369)
                     /locus_tag="VKJ77_00925"
                     /inference="COORDINATES: protein motif:HMM:NF024140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC43866.1"
                     /translation="MFKNLSIKAGLTLATSVFVLLVLVVGTCAFLSLGRANDALSGMY
                     EHDLAGSTALTRSSELLLRCRSAKNRYESLIEDDKADAAAKQLATAHEYCNESQKQWD
                     AFAALPVSDDAQALITDAAAKHAAMMQKGIMPEFDALEAKDFDAYKRIQMQFSSPLYN
                     QFDQLSQPLLGYVSSRAQQRFEAAETTANIVNTVLVACALLALVIGITVRIALTRLVV
                     KPITAMAADFERIAGGDLRTPIIVESDNEIGQLQGALRRMQTELATTVRHIRHSAESI
                     TVAAGEIASGNTDLSARTEQQAASLQETAASMEQISGTVQRNADNASQATTLAASAST
                     IASHGSAVVNNVISTMADISRSSAKIADIITIIEGIAFQTNILALNAAVEAARAGEEG
                     RGFAVVAGEVRNLAQRSSSAAKEIKELIDTSVERVSAGSGLVGEAGATMTQITQAVQR
                     VTDIMS"
BASE COUNT          284 a          461 c          454 g          355 t
ORIGIN      
        1 cgctcatgat gtcggtcacg cgctgcacgg cttgcgtgat ctgggtcatc gtcgcacctg
       61 cttctccaac gagccccgaa cccgcgctca ctcgctccac cgatgtatcg atcaattcct
      121 tgatctcttt tgccgcactc gacgaacgtt gcgcgaggtt gcgtacttcg ccggccacga
      181 ccgcaaagcc gcggccttcc tcgccggcgc gcgcggcttc cacggctgcg ttgagcgcca
      241 ggatgttggt ctggaacgcg atcccttcga tgatcgtaat gatgtccgcg atcttcgccg
      301 aactccgcga gatatcggcc atggttgaga ttacgttgtt caccacggcg ctcccatgac
      361 tcgcgatggt cgacgcgctc gcggcaagcg tagtcgcctg gctggcgttg tccgcgttgc
      421 gttggaccgt gccgctgatc tgctccatgc tcgccgccgt ttcttgcaac gacgcagctt
      481 gctgctcggt gcgcgcggac aggtcggtgt tgcccgaagc aatctcgccg gccgcgacag
      541 taatggattc cgctgaatgg cggatgtgcc gcacggttgt tgcaagctcc gtttgcatgc
      601 ggcgcaacgc gccttgcaac tgaccaattt cgttgtcgct ttccacgatg atcggcgtac
      661 gcaaatcgcc cccggcgatg cgctcgaagt cggcggccat tgccgtgatt ggcttcacga
      721 ccagacgcgt caatgcaatt ctcacggtga tgcctatcac cagcgccagt agcgcgcagg
      781 cgaccagtac cgtattcacg atgttggcgg tcgtttccgc tgcttcgaaa cgttgctggg
      841 cgcgcgacga tacataaccg agcaacggct gcgaaagctg gtcgaactgg ttgtagagcg
      901 gactgctgaa ctgcatctgt atacgtttgt acgcgtcgaa gtctttcgct tcgagcgcgt
      961 cgaactccgg catgatgccc ttttgcatca tcgcggcgtg cttggccgcg gcgtcggtaa
     1021 tgagcgcctg cgcatcgtcg gatacgggca acgcggcgaa cgcatcccac tgcttttgcg
     1081 attcattgca gtattcgtgg gctgtggcga gttgtttagc ggcggcgtca gccttgtcgt
     1141 cttcaatcag cgattcatac cggttcttcg cagagcggca acgcaacagc aattcggaac
     1201 tgcgcgtcag cgcggtgcta ccggccagat cgtgctcgta catgccgctt agcgcgtcgt
     1261 ttgcacggcc cagcgaaaga aatgcacacg ttccgacaac gagtaccaac aggacaaaca
     1321 cgcttgtcgc gagggtcaag cctgccttga ttgaaagatt cttgaacact gtccgctggc
     1381 ctcattgata tgaacatata tatgtttaac ggacccgaag cggaagactt gagggttttt
     1441 tcctatttat gatgactagc gaaagtggaa cagctccgcg ggtgtgtcga tcaacacggc
     1501 ctgccgatgt gactcatcgg tgacaaggcg atataggtca tgcagcgcgt gtcg
//
LOCUS       DATGBK010000065         1643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_988, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000065 DATGBK010000000
VERSION     DATGBK010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_988"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..717
                     /locus_tag="VKJ77_00930"
     CDS             <1..717
                     /locus_tag="VKJ77_00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HMC43867.1"
                     /translation="VDLTLERARACADAVAKAGVVCMIGFQRRFDPTFAALKARVEAG
                     EIGDPEMLVITSRDPGAPPVEYIKHSGGIFKDMLIHDFDIFRWMLDDEADTLHATGSC
                     LTDPAIAEAGDIDSTAVTIRTKRGRLCQINTARRAAYGYDQRFELLGSQGMLQAGNVR
                     PTEVTAYSKTSVSSDVPEAFFLERYRAAYALEIAHFFDAIQEGKPVRTTVADGLKALE
                     LAEAATRSWREGTIIKLGTA"
     gene            714..>1643
                     /locus_tag="VKJ77_00935"
     CDS             714..>1643
                     /locus_tag="VKJ77_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HMC43868.1"
                     /translation="MKAPVRIRIVGLGRLGQRHARNLAWHVPGATLAAACSPVAAERE
                     WAAANLPELKLYDDYESMLKDASLDAVWLVTPTSLHADQIIAALRAGKHVFCEKPLSL
                     DLAQCDRVIEESARVPHLQVMIGFVRRFDASYRDAFNKISQGAIGRPFMVRSQTVDKN
                     DPDGFFVRFAPTSGGLFLDCSVHDIDLARWMLGNPRVTRVFASGTIAIHEGLAECGDI
                     DNGVAICEFEGGRLAVFQASRTSAHGHDTQTEVTGTGGALSVGHNPRANRVEIYDAGG
                     VRNECTPTFFERFEQAFLNEAEVFVASLTGGPAT"
BASE COUNT          308 a          476 c          542 g          317 t
ORIGIN      
        1 gtcgacctca ccctcgagcg tgcacgcgct tgcgcggatg ccgtcgcgaa agccggcgtg
       61 gtttgcatga tcggcttcca gcgccgcttc gatccgacct ttgcagcgtt gaaggcgcgt
      121 gtggaggcgg gagaaatcgg cgatccggaa atgctggtga tcacgagccg cgatccgggc
      181 gcgccgccgg ttgagtacat caagcattcg ggcggcattt tcaaggacat gctgatccat
      241 gacttcgata ttttccgctg gatgctcgac gacgaagccg acacgctgca cgccaccgga
      301 agctgtctga cggacccggc gattgcggag gcgggcgata tcgattcaac ggctgtgacg
      361 atccgaacca aacgcggccg cttgtgccag atcaacactg cgcgacgcgc ggcgtacgga
      421 tacgaccagc gttttgaact gctcggcagc caaggcatgc tgcaagccgg caatgtgcgc
      481 ccgactgaag tcacggcgta ttcaaagacg tccgtttcga gcgatgtgcc ggaagcgttt
      541 ttcctggagc gttatcgcgc ggcgtacgcg ctggaaattg cccatttctt cgatgccatc
      601 caggaaggca agccggtccg tacgacggtc gcggacggtc tgaaagcgtt ggaactcgct
      661 gaggcggcta cgcggtcgtg gcgtgaagga acaatcataa agctggggac ggcatgaaag
      721 cgcccgtgcg gattaggatt gtcggattgg ggcggctcgg tcagcgccac gcacgtaacc
      781 tcgcgtggca tgtgccgggc gcaacgctcg cggcggcgtg cagcccggtt gcggcagaac
      841 gcgagtgggc cgcggccaac ctgcccgaac ttaagctcta cgacgactat gaatcgatgc
      901 tgaaagacgc atcgctcgat gccgtctggc tcgtcacgcc gacttcgctg cacgctgacc
      961 agatcatcgc ggcgttgcgt gcgggcaagc atgtgttctg cgaaaaaccg ttgtcgctgg
     1021 acttggctca gtgtgatcgc gtgattgaag aaagcgcgcg cgttccgcat cttcaggtga
     1081 tgatcggctt cgtgcgccgt ttcgatgcca gttatcgcga cgctttcaac aagattagcc
     1141 aaggcgcgat cggccggccg ttcatggtcc gttcgcagac cgtcgacaag aacgatcccg
     1201 atggtttttt cgtccgtttc gcgccgacgt cgggcggttt gttcctcgat tgcagtgtcc
     1261 acgacatcga tctcgcgcgc tggatgctgg gtaacccgcg ggttacgcgc gtcttcgcca
     1321 gcggcacgat cgcgatccac gaaggcttgg ccgaatgcgg cgatatcgat aacggtgtcg
     1381 ccatctgcga attcgagggc ggccggctcg cggtgttcca ggcatcgcgg accagcgcgc
     1441 acggtcacga tacccagacg gaagtgaccg gaacgggtgg ggcactatcg gtgggacaca
     1501 atccgcgggc gaatcgcgtg gaaatctacg atgccggcgg cgtccgcaac gaatgcacgc
     1561 cgacgttctt tgagcgcttc gagcaagcgt tcctgaacga agcggaggtg ttcgtggcgt
     1621 cgttgaccgg agggcctgca acg
//
LOCUS       DATGBK010000066         2017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_116714, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000066 DATGBK010000000
VERSION     DATGBK010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116714"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(50..550)
                     /locus_tag="VKJ77_00940"
     CDS             complement(50..550)
                     /locus_tag="VKJ77_00940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HMC43869.1"
                     /translation="MSDASDVHSHAVALETTAKAVISLEGDFLRPLSVDLAEFREQPN
                     VVADPFDLRCYTTNRFIRSVDTYRGVLLKDLIMKAGLRPEPKGEFKRTVFIAVAHDGY
                     AVTFSWHELFNTPVGERVIVAHECGGRSLSAEDGVPILFSGADILPAPRHVKRLVRIV
                     ARVLTA"
     gene            742..1668
                     /locus_tag="VKJ77_00945"
     CDS             742..1668
                     /locus_tag="VKJ77_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43870.1"
                     /translation="MPHRLTRYALTLASTLTAAAVIALSGCSSAQIVSAPQRVTLDAR
                     ANGMAIRPADGTIFITDDKTNSVLSSADGKTFTPFAAIPAVTDQGNALSQVSTADTGS
                     LLVGRFGFGTAGAVFDISSNGSVSPLSGTDPTRRRLGLAAIGTGKILSTWFVKNGNSP
                     ATGGLSLITYDVSTHAASEHNLLTGLAKPVGIAVQGDAVLISDQADNMILKTSLSGLV
                     NHAQAGGLSTSAIKINGPDLLTIDSNGTLYTKCNSTAVCKISPDESVAVIANDFEDAR
                     GVAIDPAHHVLYVIDRPKSADNGSILRAIPLN"
     gene            complement(1700..>2017)
                     /locus_tag="VKJ77_00950"
     CDS             complement(1700..>2017)
                     /locus_tag="VKJ77_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012337149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HMC43871.1"
                     /translation="VITHGSAASLGLAAGKAAFALVKASSVIVMVDVADSQVSARNCF
                     AGKVSAVTTGAVNSEVIITVAGGAQIAAIVTNESAQRLALASGKAATAIFKASSVIIG
                     VDD"
BASE COUNT          446 a          646 c          557 g          368 t
ORIGIN      
        1 ggcgtccgtc cgagcgacag cgcaagttct cgcgcgagaa atttttaaat caggccgtca
       61 agacccgcgc cacgatccgc acaagacgct tcacatgacg gggagcggga agaatatcgg
      121 cgcctgaaaa caaaatgggt acgccgtcct cagcgctaag cgagcggcct ccgcattcat
      181 gcgcgacgat gacgcgctcg cccacgggcg tattgaataa ctcgtgccat gagaaggtga
      241 ccgcgtagcc gtcgtgcgcg accgcaatga acactgtgcg cttgaactcg cccttaggct
      301 cggggcgcag tccggctttc atgatcaggt ctttcagcaa cactccgcga taggtgtcga
      361 cgctgcggat aaaccggttc gtcgtatagc aacgcagatc gaaaggatcc gcgactacgt
      421 tgggttgctc cctgaattcc gcaagatcga cgctcaacgg tcgcaggaaa tccccttcaa
      481 gcgatatgac ggctttcgca gtagtttcga gcgcgactgc gtgggaatgg acatcactcg
      541 catcactcat ttctcatcct ccaggggccg gtttcaggcg gcttgtccgg cattatatcc
      601 acgcgaatat tacgctgctg tcacggacgg cagctcggtg cgcgaacaat aggcaacata
      661 ccaattcgcg catgtggccg ccgggatggc actaagcgat atattgatgg ccttggaccc
      721 atgcactgac aaggaaaaac gatgccccac cgtctcaccc gctacgcgct aacgcttgca
      781 agcaccttga ccgccgctgc ggtcatcgcg ctatccggtt gcagctcggc gcaaatcgta
      841 agcgcgccgc agcgcgtcac cctggatgca cgggcaaacg gcatggcgat ccgtccagcc
      901 gatggcacga tcttcatcac cgacgataaa accaacagcg tgctttcatc ggctgacggc
      961 aagacattca caccgtttgc cgccattccc gcagtcacgg accaagggaa tgcgctaagc
     1021 caggtgagca ccgcggacac cggttcgcta ctggtcggac gattcggatt cggcaccgcg
     1081 ggcgccgtgt tcgacattag ctcaaacggg tccgtctccc cgctgtcagg caccgatcca
     1141 acgcggcgaa ggctgggact tgccgccatt ggtacgggaa aaatactctc gacctggttc
     1201 gtcaagaacg gcaatagccc ggcaacgggc ggcctcagcc tgatcactta cgatgtttca
     1261 acccacgccg cgtccgagca caacttgttg accggattgg cgaaacccgt cggcatagcc
     1321 gtacaagggg acgccgtcct tatatcggat caggctgaca acatgatcct gaagaccagc
     1381 ctgtccggac tggtcaacca cgcccaggcc ggcggcctga gcacatcggc gatcaagatc
     1441 aacggacccg acctgttgac catcgattca aacggcacgc tctatacaaa atgcaactcg
     1501 acggcggtct gcaagataag ccccgatgaa tcggttgccg tcatcgccaa cgatttcgag
     1561 gatgcccgcg gtgtcgctat cgacccggcg catcacgtgc tgtacgttat agaccggccg
     1621 aaatccgctg acaacggcag tatcctgcgc gccatcccac tgaactgacg aactgacgcc
     1681 gcgcaagttg acgagaaggc tagtcgtcca cgccgataat cacgctcgac gccttgaaga
     1741 tcgccgtggc cgctttgccg ctggcgagcg ccaaccgttg cgcgctttcg ttcgtgacaa
     1801 tagcggcaat ctgcgcgccg cccgccacag taataatgac ttcgctgttg acggcgcccg
     1861 tggtcacagc cgacaccttc ccggcaaagc agttccgcgc cgatacctgg ctatccgcca
     1921 catcaaccat cacgatgacc gacgatgcct tgaccagcgc aaacgcagcc ttgccggcgg
     1981 ccagtccgag cgatgcagcg ctgccatgcg tgatcac
//
LOCUS       DATGBK010000067         2310 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_278349, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000067 DATGBK010000000
VERSION     DATGBK010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278349"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..589)
                     /locus_tag="VKJ77_00955"
     CDS             complement(<1..589)
                     /locus_tag="VKJ77_00955"
                     /inference="COORDINATES: protein motif:HMM:NF021246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(R)-hydroxyalkanoic acid synthase subunit
                     PhaE"
                     /protein_id="HMC43872.1"
                     /translation="MGQASHATPHFSSAHPGALAFAPFIAAAERFTVAARKYLEDTAH
                     ASAPESAEAVRTFSDFLRGQSTDFFRFPWSADFYGSVTKAVPPTSMIDVPALGLTREH
                     QQRAQRAADAGRRIGEAQRQLQLLLSDALRDAATAFAARLEPPQPTAVSAEALRSLYN
                     SWIDCAEEAYARAAHSDTFCNALADFVNASSLLRRE"
     gene            832..1347
                     /gene="phaR"
                     /locus_tag="VKJ77_00960"
     CDS             832..1347
                     /gene="phaR"
                     /locus_tag="VKJ77_00960"
                     /inference="COORDINATES: protein motif:HMM:TIGR01848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate synthesis repressor PhaR"
                     /protein_id="HMC43873.1"
                     /translation="MKPERLIRKYSNRRLYDTSGSRHVTLDDLRQLVVAGEKIKVVDD
                     KSGEDLTRSVLLQIIAEQEQFGLPVLGCELLEMIIRFNGGPMQALLTRYLEQAFTAML
                     RQQEAMQSEMAKALQAPFAPLTELARKSMEAWEQMQAATRNAFGGSAAETSSAANKDE
                     AKPRGESKKEA"
     gene            1354..2115
                     /locus_tag="VKJ77_00965"
     CDS             1354..2115
                     /locus_tag="VKJ77_00965"
                     /inference="COORDINATES: protein motif:HMM:NF006072.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC43874.1"
                     /translation="MDIRNKAVVVTGAGRGIGRAIAQQLAHHGANVALFDVDATDLEE
                     TVALCGAESVQARGYRVNVADEGEVCAAMTRVAADFGRFDGLVNNAGVVRDGLLVKVK
                     DGVAVGRMTMDQWNAVIGVNLTGVFLCAREGAAHMIECGNGGVIVNISSISRVGNAGQ
                     SNYSAAKAGVESLGVVWAKELARYGIRVGSIAPGFTHTEILASMRPEVLDKLTAPVPL
                     KRLGQPDEIAHAVRFIFENDFFTGRCLDVDGGLRL"
BASE COUNT          501 a          646 c          730 g          433 t
ORIGIN      
        1 attcccggcg caataggctg ctcgcattca cgaagtcagc tagcgcgttg cagaacgtat
       61 cgctgtgagc ggcgcgggcg tacgcctctt ccgcgcagtc gatccaggag ttgtagaggc
      121 tgcgcagcgc ttcggcactc accgcggtcg gttggggcgg ctcgagccgc gccgcaaagg
      181 cggtggcagc gtcgcgtaac gcatcggaca gtagcaattg cagctggcgc tgcgcctcac
      241 cgatgcgcct tccagcgtcg gccgcgcgct gcgcacgctg ctgatgttca cgggtcaggc
      301 cgagcgctgg cacgtcgatc atggacgttg gcggtacggc tttggtaacg ctgccataaa
      361 aatcagcgct ccaaggaaat cggaaaaaat cagtcgactg tccacgtaga aaatcgctga
      421 aggtacgcac cgcctcggct gactccggcg ccgaagcatg ggcagtgtct tcgagatact
      481 tccgcgcggc gaccgtgaag cgctcggctg cagcgatgaa cggtgcgaag gcgagggcgc
      541 cagggtgggc ggagctgaag tgcggggtgg cgtggctcgc ctgccccatg tgcgcagcga
      601 aggcttgcca ctggctccaa atatcatctc ccacgccgct ctccgtatgc gatgcaaaat
      661 agggtagtca gccgatagcg tggtaacatg actgtggtac ttaaagtcta agcaattgtt
      721 tattatgaca taatgataat caaaacgatt aatgcatcaa gggtccgtct tgtagtggtt
      781 gtgcaatgcg aaagcttaac ctagcatgct gaaggacttt ggatcggaac catgaagcca
      841 gaacgcctca taagaaaata ctcgaatcgc cgcctctatg acacaagcgg cagccgccac
      901 gtcacgctcg atgacctgcg gcagctcgta gtggcgggcg agaaaatcaa ggtcgtcgac
      961 gacaaatcag gcgaggacct gacgcggtcg gtactgttgc agatcatagc tgagcaagaa
     1021 caattcggtt tgccagttct gggctgcgag ttgctcgaaa tgatcatccg cttcaacggc
     1081 ggtccgatgc aagcgctgct cacgcgctat ctcgagcaag cgttcaccgc gatgctgcga
     1141 cagcaagagg caatgcagtc agaaatggct aaggcattgc aggcgccgtt cgcacctttg
     1201 acagagctgg cgcgcaagag catggaggca tgggagcaga tgcaggcagc gacgcgcaac
     1261 gcattcggcg gatctgcagc tgagacttcc agcgctgcga acaaggatga agccaagcct
     1321 cgaggcgaga gcaaaaaaga agcgtgacat tttatggata ttcgtaacaa ggcggtggta
     1381 gtgaccggcg cggggcgtgg catcggtcga gcaatcgcgc agcagctcgc gcatcacggt
     1441 gcaaacgtcg ctcttttcga tgttgatgca accgatctcg aagagacggt cgcgctatgc
     1501 ggggccgagt cggtgcaggc gcgcggctac cgcgtaaatg tcgccgacga aggtgaagtg
     1561 tgcgccgcca tgacgcgcgt ggcggccgac ttcggccgct tcgacggact tgtgaacaac
     1621 gccggagtcg tacgcgacgg gttattggtc aaggtgaaag atggagtcgc ggtcggccgc
     1681 atgacgatgg accaatggaa cgccgtaatc ggcgtgaacc tcaccggcgt attcctgtgc
     1741 gcgcgcgaag gcgcggcaca catgatcgaa tgcggcaacg gcggcgtcat cgtcaatatt
     1801 tcgagcattt ctcgagttgg taacgctggc caaagcaact acagcgccgc caaggcgggc
     1861 gtcgaatctt tgggcgtggt ctgggcgaag gaacttgcgc gctacggtat tcgcgtcggt
     1921 tcgattgcgc ccggcttcac gcacacggag atcttagctt caatgcgtcc ggaggtgctc
     1981 gacaaactca cggcgccagt gccgctaaag cgcctcgggc aaccggacga aattgctcac
     2041 gccgtgcggt ttatattcga gaatgatttt ttcaccggcc gctgcctcga cgtggacgga
     2101 ggattgcggc tttaagtcca gctctgtccc cacgccgagt gcgtcgcaga ttcggctgcc
     2161 tgcccagatc acgcgcgtaa ccgaagccaa caaaagacca tccgttgggc tgtcgtcatg
     2221 caggctgcac tggccggatg gtggacgccg cggcaatcca agacgcgcca tcaccagcgc
     2281 ctcgaccgct tcggcttcgt attcaaagac
//
LOCUS       DATGBK010000068         1602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_24048, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000068 DATGBK010000000
VERSION     DATGBK010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24048"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..450
                     /locus_tag="VKJ77_00970"
     CDS             <1..450
                     /locus_tag="VKJ77_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HMC43875.1"
                     /translation="IGLTNVLDLRGGGLGFLGDEQLAWLKKDLQARTSSTPIVVFAHI
                     PLWSLYPQWGWGTDDSAQALSMMKRFGSVTVLNGHVHQVAQKVEGEISFYSALSTAFP
                     QPAPGTAAGPGPMKVPADTLRKMLGVRSVNYIPGKTELAVVDSRLSA"
     gene            534..851
                     /locus_tag="VKJ77_00975"
     CDS             534..851
                     /locus_tag="VKJ77_00975"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin family copper-binding protein"
                     /protein_id="HMC43876.1"
                     /translation="MAALCLATTLAAPPAFAAQATPATTVVIDNFSFSPAQLSVAAGS
                     TVTWENHDDMPHTIVNDATPREFKSAPLDSGENFSQTFSKPGTYKYFCSIHPHMTGTI
                     VVK"
     gene            complement(857..>1602)
                     /locus_tag="VKJ77_00980"
     CDS             complement(857..>1602)
                     /locus_tag="VKJ77_00980"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HMC43877.1"
                     /translation="GDNLLHGGTAGFHRALWDAQEVDGGLVLTHESPEGDAGFPGNVS
                     TTLRYTLDDDGTLTLAYEAVTDAPTPLNLTNHACFNLSGDETADIRGHVISIDADTFF
                     EVDAALIPEGRAQVAGHAFDFRASAPLGARLDWPHDQLARAGGFDHCYVVGENGKTLK
                     PVVRLYDPGSGRELTMGTNAPGVQFYTGNHLDGIVGRHGRRYGKHAGLCLQAGAFPNQ
                     VNMADAGSVIVRPGEPYRQVTWYRLGLQQ"
BASE COUNT          310 a          491 c          492 g          309 t
ORIGIN      
        1 atcggcttga ccaatgtgct ggatctgcgt ggcggcggcc tggggtttct cggcgatgag
       61 caactggcgt ggctgaagaa agacctgcag gcgcgcacga gcagcacgcc gattgtggta
      121 ttcgcgcata tccccctctg gtcgttatat ccgcaatggg gctggggaac ggacgacagc
      181 gcgcaggcgc tgagcatgat gaagcgcttc ggttcggtca cggtacttaa cggccatgtg
      241 catcaggtcg cgcaaaaagt tgaaggcgag atcagctttt actccgcgtt gtcgaccgca
      301 tttccgcaac ccgcgccggg caccgcggca ggtcccggtc cgatgaaagt tcctgccgat
      361 acgctgcgca agatgctggg tgtgcgttcg gtcaactata tcccgggcaa gaccgagctg
      421 gccgttgtcg actcacggct cagcgcatga gcgccaactt gaaaaagcgg agaatgatga
      481 tggcaatact cgactttcgg cgtgcacggt tggccaagac cctctctaaa acaatggctg
      541 cactttgcct cgcaacgacg ctggcggccc cgccagcctt cgcggcccag gctacgccgg
      601 cgaccaccgt agtgatcgac aatttttcgt ttagtcctgc tcagttatcc gttgcagcag
      661 ggtcgaccgt gacgtgggaa aaccatgacg atatgcccca taccatcgtc aacgatgcaa
      721 cgccgcgcga attcaaatcg gcgccgctcg attccgggga gaacttttca cagacgtttt
      781 cgaaacccgg cacgtacaag tatttctgtt cgatccatcc gcacatgacg ggcacgatcg
      841 tcgtgaaata aagcggctat tgctgcaagc ccagccgata ccacgtgacc tgccggtagg
      901 gttcaccggg gcgcacaatc acgctgccgg cgtccgccat gttgacctgg ttaggaaacg
      961 cgccggcctg gagacacagg ccggcgtgtt tgccatagcg ccgcccatgc cgtcccacga
     1021 tgccatccag atgattgccg gtgtagaact gcacgccggg cgcgttggtt cccatcgtca
     1081 attcgcggcc gctgccgggg tcgtaaagcc gcacgacggg tttgagcgtc ttaccgtttt
     1141 cacccacgac ataacaatga tcgaagccgc cggcacgcgc gagctgatcg tgcggccagt
     1201 cgagccgcgc acccagcgga gcgcttgcgc ggaagtcgaa cgcatggccc gcgacctgcg
     1261 cgcggccttc ggggatcagc gcagcatcga cttcgaagaa cgtgtcggca tcgatggaaa
     1321 tcacgtggcc gcggatatcg gcggtttcgt cgccggacag gttgaagcac gcgtggtttg
     1381 tcaggttgag cggcgtaggc gcatccgtta cagcttcgta cgcgagcgtc agcgtgccgt
     1441 cgtcgtcgag cgtgtagcgc aatgtggtcg acacattacc ggggaacccc gcgtcgccct
     1501 ccggcgactc atgcgtgagg accagtccgc cgtccacttc ctgcgcgtcc catagtgcgc
     1561 gatgaaagcc tgccgtaccg ccgtgaagca ggttgtcgcc ct
//
LOCUS       DATGBK010000069         1605 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_255355, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000069 DATGBK010000000
VERSION     DATGBK010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255355"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..684
                     /locus_tag="VKJ77_00985"
     CDS             130..684
                     /locus_tag="VKJ77_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43878.1"
                     /translation="MRHLRTTALLLAFALAPAVTMAATPAPKLPARIDVTKIQPKALL
                     PKTKLHTEFTVETNKLGQVTRIRKVAKSSSDSYNAQTYGNALQTFIRTAEGTAIAGTY
                     KLIYDYDPKTAKVKREVELVRAGGVNENARGAALDMLSKAHPRPGPSAAANVPVPAPA
                     PGASVNNARLPDLNAIMKPTPSPH"
     gene            731..961
                     /locus_tag="VKJ77_00990"
     CDS             731..961
                     /locus_tag="VKJ77_00990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43879.1"
                     /translation="MDFYLRNREPVDRSIDADVARSCTNKQQYASEGEARAIATMQGM
                     SGSLFTYQCRYCEFWHLTRRPTSSGPPEIIDG"
     gene            complement(958..>1605)
                     /locus_tag="VKJ77_00995"
     CDS             complement(958..>1605)
                     /locus_tag="VKJ77_00995"
                     /inference="COORDINATES: protein motif:HMM:NF028108.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5069 domain-containing protein"
                     /protein_id="HMC43880.1"
                     /translation="MGGPSCLQERRAAAYRMRRNRLRSARNASENEWVQPGTLLRPNR
                     RAFPGTARMGGEEAGVMSEATLSYPDCDLREHPPRRASEKLGGIAFMARTVDKMRAKI
                     QDTLGQYKVGPGISVYLFEWLGITEAQFEAAVRAAKNDDDVVRWLGTHTDPATYADVN
                     HRLEIRGIRDDAHFAELLPRYPVFKDHPELRTATWFEIFDVDDRWIFEPKNRTTN"
BASE COUNT          337 a          517 c          460 g          291 t
ORIGIN      
        1 aagcaacgag cgcgatacgg acgcgcgcga cgagcgcgtg aaccaaaagc gcgaatgcga
       61 cgttaccttc caagtgattg tcgcgtgcgc gtgctgcggc gcacccttcg ctgcactttc
      121 aaggaactaa tgcgccactt acgcacgacc gctctgctcc tcgcattcgc cctcgcgccc
      181 gccgttacga tggcggcgac gccggctccc aagttgcccg cgcgcatcga cgtgaccaaa
      241 atccagccga aagccctgct tccaaaaacg aaactccaca ccgagtttac ggtggaaacg
      301 aacaagctcg gtcaggtcac gcgcattcgc aaggttgcga agtcgagcag cgattcgtac
      361 aacgcgcaaa cgtacggcaa cgcgttgcaa acgttcattc gcacggccga aggcacggcc
      421 atcgccggca cctacaaact catctacgat tacgatccga aaacggctaa ggtcaagcgc
      481 gaggtagaac tcgtgcgcgc gggcggcgtg aacgaaaacg cgcgcggtgc agccctggat
      541 atgctgagca aagcacaccc gcgccccgga ccgtccgctg cggctaatgt acccgtgccc
      601 gcacccgcgc ccggcgcgtc ggtaaacaac gcgcgcttgc cggatctcaa cgcgatcatg
      661 aagccgacgc cctccccgca ttagcaaacg gccgcagcgt ccggccaagc gtgggccgga
      721 cgaatcgctc atggactttt atttgcgtaa ccgcgagccg gtcgaccgtt cgatcgatgc
      781 cgacgtcgcg cgctcgtgca cgaacaagca gcaatacgcc agcgaaggcg aagcccgcgc
      841 catcgccacg atgcaaggca tgagcggcag cctgtttacc taccagtgtc gctactgtga
      901 attctggcac ttgacgcgac gtccgacatc gtcgggtccg ccggagatta tcgacggcta
      961 attcgtcgta cggttcttcg gctcgaatat ccaccggtcg tcgacatcga aaatctcgaa
     1021 ccacgtggcc gtgcgtaact ccgggtgatc cttgaagacc gggtagcgcg gtaagagttc
     1081 ggcaaagtgc gcatcgtcgc ggatgccgcg aatctccaaa cggtggttga cgtcggcgta
     1141 cgtggccgga tcggtatgcg tgcctaacca gcggacgacg tcgtcgtcgt ttttcgctgc
     1201 acgaaccgcc gcttcaaatt gcgcttcggt aatacccagc cactcaaaca gatagaccga
     1261 aatgcccggt ccgactttgt attggccaag cgtgtcctga attttcgcac gcatcttatc
     1321 aaccgtgcgc gccataaagg cgatgccgcc gagtttttcg cttgcgcggc gcggcggatg
     1381 ctcgcgcaga tcgcaatcgg gatagctgag agtcgcttct gacataacac cggcttcttc
     1441 tccgcccatg cgcgcggtgc ccgggaaggc acgacgattc ggcctcagaa gggtgccggg
     1501 ttgtacccac tcattttcgg aggcatttcg tgcgctacgt aacctattcc gacgcatccg
     1561 gtaagcagcg gcccggcgtt cttgaaggca actcggtccg cccat
//
LOCUS       DATGBK010000070         5691 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_70382, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000070 DATGBK010000000
VERSION     DATGBK010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5691
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70382"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2070
                     /gene="glyS"
                     /locus_tag="VKJ77_01000"
     CDS             <1..2070
                     /gene="glyS"
                     /locus_tag="VKJ77_01000"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009963525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009345 - glycine-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HMC43881.1"
                     /translation="VELRTEELPPKALARLGTSFAEGIVQRLAARDLIEGEASFEKYA
                     TPRRLAVVIKNVRAVAPERQVREKVLPVSVALDKDGQPTAPLAKKLAALGFPDFAISD
                     LERAQDGKAEAFFLRYAAPGATLADGLQTALQETLSKLPIPKVMTYQRPDGTSVQFVR
                     PVHGLVALHGRHVVPVSALGIDSGDTTLGHRFMSEGIVVITHADDYAETLRSKGKVVA
                     NFDDRRESIRTQLLAFAGEDRVVMPESLLDEVNALVEWPVVYQCRFDESFLQVPQECL
                     ILTMQTNQKYFALTDEHGKLRSRFLIVSNIETQTPGDIVEGNERVIRPRLADAKFFFE
                     QDKKKRLADRVPLLANVVHHNKLGSQLQRVQRLEALAGEIAPMIGVDVAVTKRAALLA
                     KADLITDMVGEFPELQGTMGTYYARHDGEPEEVALASSEHYLPRFSGDETPPTGVSSA
                     VALADKLETLVGIWGIGLQPTGEKDPFALRRHALGVLRILLEKRLAIDLFDLLRIAHK
                     QFADMPQVVDSTDAIYAFFMDRLRGVLRERGFNAIEIDAVLSLNPTRLDDIVARLDAV
                     REFASLPEAASLAAANKRISNILKKSAEGVPASVQPALLQEAAEKALYAQLEQVAPRV
                     QTQLAERNYTEALSALSALRDAVDTFFNDVMVNAEDPALRSNRLALLGALHQQMNCVA
                     DISKLAA"
     gene            2082..2645
                     /gene="gmhB"
                     /locus_tag="VKJ77_01005"
     CDS             2082..2645
                     /gene="gmhB"
                     /locus_tag="VKJ77_01005"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010101763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HMC43882.1"
                     /translation="MPTNANKKLVILDRDGVINVDSDAFIKSPDEWVAIPGSLEAIAR
                     LNQAGYRVAIASNQSGIGRGLFDMAALNAMHEKMNRTAAAVGGRIDAVFFCPHTQEDE
                     CECRKPKPGMLQQIVERFEIDPADTPMVGDSLRDLQAGAALGFALHLVLTGKGRKTLA
                     EGNLPPNTKVHDDLRTFALDFLAAHHD"
     gene            2712..3533
                     /locus_tag="VKJ77_01010"
     CDS             2712..3533
                     /locus_tag="VKJ77_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HMC43883.1"
                     /translation="MRFIRSLLLMVFFAVYTVPYACVCFLVFPFMRAEKRYWMAAYWC
                     KSGIVVMRYLNGIRYQIEGMENLPDGPAVLLSKHQSAWETLAFPALMPRPLCYVFKRE
                     LLFVPFFGWTMGMLKMVHIDRRQGKDAFASVARQGRERMAEGAWVIMFPEGTRTHVGQ
                     QGKYKSGGARFACAAGAPVVPIAHNAGHVWPRKSFLKYAGIVTMSIGRPIDTTGLTPE
                     EVNLRVERWIEAEMRRIDPDSYGPADGFAAESDADSKSDAKSDCGSKSHGAASGL"
     gene            3631..4623
                     /locus_tag="VKJ77_01015"
     CDS             3631..4623
                     /locus_tag="VKJ77_01015"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HMC43884.1"
                     /translation="MQKTPSRQRPAAALDNPQLDLPLNLPSEPRLSSAAPSPAIPAIP
                     AASAPAMPATLRGDIAPTDTTETASPSAPPLRAPSAPDGSRNRQLVLGSQMLDYRLKR
                     SSRRTIGFTIDGTGLAITAPRWVTIGAIESAIAEKEKWIFKKLTEWQTRVEQRVVPRI
                     EWKDGAQLPYLGRTVTVMMTSAPGTTGKSATQPAFDAGSDVLWLGLPALADGQLIRER
                     VQRWLHVQALQVFGERLPVYAAKLGVEFRAYALSSAATRWGSCSSDGKIRLNWRLIHF
                     PVHVIDYVVAHELAHLREMNHSARFWHTVESIFPDFREARHTLKHHPPELLPLL"
     gene            4794..5180
                     /gene="gloA"
                     /locus_tag="VKJ77_01020"
     CDS             4794..5180
                     /gene="gloA"
                     /locus_tag="VKJ77_01020"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HMC43885.1"
                     /translation="MRLLHTMLRVGDLQRSIDFYTRILGMKVLRQSENTEYKYTLAFV
                     GYGDESENSVLELTYNWGVDKYDLGSAYGHIALEVDDAAAACNRIREAGGKVSREAGP
                     VKGGTTVIAFVEDPDGYKVELIEKHA"
BASE COUNT         1129 a         1711 c         1708 g         1143 t
ORIGIN      
        1 gtcgagctgc ggaccgaaga actcccgccg aaagcgctcg cgcgcctggg cacctcgttt
       61 gccgaaggca tcgttcagcg gctcgccgcg cgcgacctga tcgaaggtga agcgagtttc
      121 gaaaaatacg ccacgccgcg acgtctcgcc gtggtcatca agaacgtgcg cgcagtcgca
      181 ccggaacggc aagtacgcga gaaggtgcta ccggtttccg tcgcactgga caaagacggc
      241 cagcccaccg cgccgctcgc gaagaaactc gcggcgctgg gtttccccga cttcgccatc
      301 agcgatctcg aacgcgccca ggacggtaag gccgaagcgt ttttcctgcg ctacgcggca
      361 cccggcgcaa cgctagccga cggcctgcag accgcgctgc aagaaacgct cagcaagttg
      421 cctattccca aggtgatgac ctatcaacgg cccgacggca ccagcgtgca gttcgtgcgg
      481 ccggtgcatg ggctggtcgc gttgcatggc cgtcatgtcg tgccggtgag cgcgctcggc
      541 atcgactccg gcgacaccac gctggggcat cgcttcatgt ccgaagggat cgtcgtgatc
      601 acgcacgccg acgattacgc agagacgctg cgctcgaagg gcaaggttgt agcgaatttc
      661 gacgatcgcc gtgaatccat tcgtacgcag ttgctggcgt tcgcgggcga agatcgcgtg
      721 gtgatgcctg agtcgttgct ggacgaagtg aatgcgctgg tcgaatggcc ggtcgtgtat
      781 cagtgccgtt tcgacgagtc gttcctgcaa gtgccgcagg aatgcctgat cctcaccatg
      841 cagacgaacc agaagtattt cgcgctgact gacgagcacg gcaagctgcg ttcgcgtttc
      901 ctgattgtgt cgaacatcga gacgcaaacg ccgggcgata ttgtggaagg taacgagcgc
      961 gtgatccgcc cgcgtctggc cgacgcgaag ttcttcttcg agcaggacaa gaagaaacgc
     1021 ctcgccgacc gcgtgccgct gctcgcgaac gtggtgcatc acaacaagct cggttcgcag
     1081 ttgcaacgcg tgcaacggct tgaagcgctg gcaggcgaaa ttgcgcccat gatcggcgtg
     1141 gatgtggccg tcacgaagcg cgccgccctg ctcgcaaagg ctgacctgat caccgacatg
     1201 gtcggcgaat tcccggaatt gcaggggacc atgggcacgt attacgcgcg ccacgacgga
     1261 gagccggaag aagtcgcgct cgccagttcc gaacattatc tgccgcgttt ttccggcgat
     1321 gaaaccccgc ccaccggcgt gagcagcgcc gtcgctttgg ccgacaaact ggaaacactc
     1381 gtcggcatct ggggcatcgg cctgcagcct accggcgaga aagatccgtt cgcgctgcgt
     1441 cgtcacgcgc tcggcgtgtt gcgcatcctg ctggaaaagc gccttgctat cgacctgttc
     1501 gacttgctgc gtatcgcaca caagcaattc gccgacatgc cgcaagtcgt cgactcaacc
     1561 gacgccatct acgcattttt catggaccgg ttgcgcggag tgctgcgtga gcgcggcttc
     1621 aacgcgattg aaatcgacgc tgtgttaagc ctgaacccca ctcgcctgga tgacatcgtc
     1681 gcgcgtctgg acgctgtgcg cgaattcgcg tcgttgccgg aagccgcatc gcttgccgcg
     1741 gcgaacaaac gtatctcgaa catcctgaag aagtcggcgg aaggcgtgcc ggcgagcgtg
     1801 cagcctgcgc tgcttcaaga ggctgcagag aaggcgctgt acgctcagct cgagcaagtc
     1861 gcaccgcgcg tgcaaacgca actggcagag cgcaactaca cggaagcgct gtccgcgctg
     1921 tccgcgttgc gcgatgccgt tgatactttc ttcaacgacg tgatggtgaa cgcggaagat
     1981 ccggcgctgc gaagtaaccg cctggctctt ctcggcgcac tgcatcagca gatgaattgc
     2041 gtcgcggaca tttcgaagct tgccgcctga tgcgccacac catgccgacc aatgcaaaca
     2101 agaaactggt gattctcgat cgtgacggcg tgatcaacgt cgactccgac gcattcatca
     2161 agtcgcccga cgaatgggtt gccatccccg gcagcctgga ggcgatcgcg cgtttgaacc
     2221 aggccggcta ccgcgtggcg attgcatcga atcaatcggg tataggccgt ggtctgttcg
     2281 acatggccgc gctcaacgca atgcacgaaa agatgaaccg gacggcggcg gcagtgggtg
     2341 gccgcataga cgccgtgttt ttctgtccgc acacgcagga agacgagtgc gagtgccgca
     2401 agccaaagcc cggcatgttg cagcagattg tggagcgctt cgagatcgat cccgctgaca
     2461 cgcccatggt cggcgactcg ctgcgcgatc tgcaagcagg cgcggcgctc ggcttcgcgc
     2521 tgcatctggt gctgaccggc aaggggcgta aaacgctggc agagggcaat ctgccgccga
     2581 atacgaaagt acacgacgac ctgcgcactt tcgcgctcga cttcctcgcc gcacatcacg
     2641 actgacctga ctggcctgac tgatttaacg cgcgggtttt tcgtcacatc acataagact
     2701 tattcaaacc gatgcgcttc attcgttcgc tgttgctgat ggtttttttc gccgtttata
     2761 cggtgccgta cgcttgtgtg tgcttcctcg tattcccgtt catgcgcgct gaaaagcgtt
     2821 actggatggc ggcgtactgg tgcaagtcgg gcatcgtggt aatgcgatac ctgaacggca
     2881 ttcgctatca gatcgaaggc atggagaacc tgcccgacgg tccggccgtg ctgttgtcga
     2941 agcaccagtc ggcttgggaa acgctggcgt tccccgcgtt gatgccgcgt ccgctttgct
     3001 atgtgttcaa gcgcgagttg ctgttcgtac cgttcttcgg ctggaccatg ggcatgctga
     3061 agatggttca tatcgaccgg cgtcagggca aggacgcgtt tgcatcggtg gcgcggcaag
     3121 ggcgcgagcg catggccgag ggagcgtggg tcatcatgtt cccggaaggc acgcgtacac
     3181 acgtgggcca gcagggcaag tacaagtcag gcggtgcgcg cttcgcgtgc gcggcgggcg
     3241 caccggtcgt cccaattgcc cataacgccg gacacgtatg gccgcggaaa tcgtttctca
     3301 aatatgcggg tatagtcact atgtcaatcg gtcgtccgat tgacacgaca ggcctcacgc
     3361 cggaagaagt caacctgcgc gtggagcgct ggatcgaagc ggaaatgcgt cgtattgatc
     3421 cagactcgta cggtcccgcc gatggtttcg ccgctgagtc tgacgctgac tccaagtcag
     3481 acgctaagtc tgattgtggg tccaagtctc acggcgcggc tagcggcctg tagacccggg
     3541 tgttgtttcc gtttgcgttc gttgcgttcg tttctatcga tagtgtcgtt ctttccgtca
     3601 ttcctgcgcc gcgtgcgcca agctgagccg atgcagaaga ctccctcgcg acagcgtccc
     3661 gctgccgcgc tcgacaaccc gcaactcgac ctgccgctca accttcccag tgagccaagg
     3721 ctgtcgagtg cggcaccatc gcccgctatt cctgctattc ctgccgcatc ggcccccgcc
     3781 atgcctgcaa cattgcgtgg cgacatcgca ccgaccgata caaccgaaac cgcgagtcct
     3841 tcagcgccac ctttgcgtgc gcccagtgca cccgacggct cgcgcaaccg gcaactcgtg
     3901 ctcggttcgc agatgctcga ttaccgcttg aaacgttcgt cacgccggac gatcggcttc
     3961 actatcgacg gcaccggtct cgcgattacc gcgccgcgct gggtgacgat cggggcaata
     4021 gaaagcgcga ttgccgagaa ggaaaagtgg atcttcaaga agctcaccga atggcaaacg
     4081 cgcgtagaac aacgcgtggt accccggatt gaatggaagg atggcgcgca gcttccgtat
     4141 ctcgggcgaa ccgtcaccgt catgatgacc tctgcaccgg gcacgacggg caagagcgcg
     4201 acgcaaccgg ccttcgatgc gggaagtgac gtgctgtggc tcggccttcc cgcactggcg
     4261 gatggtcagc tcattcgcga gcgcgtgcaa cgctggctgc atgttcaggc gctgcaggtt
     4321 ttcggcgaac ggctgccggt gtatgcggcc aaattaggcg tggagttcag ggcgtatgcg
     4381 ttgtcgtctg cggctacacg ttggggtagt tgttccagcg acggcaagat ccgcctgaac
     4441 tggcggctga ttcatttccc tgtgcatgtc atcgattatg tagtcgcgca cgaactcgcg
     4501 caccttcgag agatgaatca cagtgcgcgc ttctggcaca ccgtcgaatc catttttccg
     4561 gacttccgcg aagcgcgcca tacgctcaag catcatccac ccgaattgct gcccctgctt
     4621 tgacgcttgg tccgcgcgga gtggtacaga gcagcgccca gcgagccttt gctacgggcg
     4681 gtacaatttt gcatgtggcc gttttcatcg tgcgcgctgt tcactgagac acaggaaaag
     4741 acacggtaaa gcggaccacc cgttccatcg acattcccca caggaacccc atcatgcgac
     4801 ttcttcacac catgctgcga gtcggcgact tgcagcgatc catcgatttc tacacgcgca
     4861 tcctcggcat gaaagtgctg cgtcaaagcg aaaacaccga gtacaaatac acgcttgcgt
     4921 ttgtcggtta cggcgatgaa agcgaaaaca gcgtgctaga gctgacctac aactggggcg
     4981 tcgacaagta cgacctgggc tcggcttacg gccacatcgc gctggaagtg gacgacgcgg
     5041 cagcggcttg caatcgcatt cgcgaagcag gcggcaaggt ttcacgcgaa gccggcccgg
     5101 tgaaaggcgg aaccaccgtg atcgcatttg ttgaagatcc ggatggatac aaggtcgagt
     5161 tgatcgagaa gcacgcttga gtcggtttgg gggtaacgtt ccaccagcga tggcgggtta
     5221 tctccaaact ttctgcgacg gtcaaatttg cacttgttgt cgcggacccc aaacgtgacg
     5281 cattttcgaa gccacgaaat gtctgctctc tataaactga tcgcagatag gtttgcgggt
     5341 tcgcaaggac gtctatctgc ctcctgcgca agcaaggtcc agccgtgctg gtatgctggt
     5401 tttcagtcaa gagctcccgc actgtttgag gctccttcgg gagcctcatt cgtttccgtt
     5461 tgatgctaat ctttcgcgat ttatcatcag acatcctaag ttattgatac tcgccagcac
     5521 gatctgttca tcgtgaacaa cgaccagcgc tcgacgattt tcgcgcagtg cacaacgcgc
     5581 caagcttaat cactcgacat cgcgggcggc gaaccataca ccggcaacgc taacttcttg
     5641 tggtcacggg cattgcgctg gtcaacgcac ccgccggacg gcggcgcacc t
//
LOCUS       DATGBK010000071         1511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_209129, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000071 DATGBK010000000
VERSION     DATGBK010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209129"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1332
                     /locus_tag="VKJ77_01025"
     CDS             <1..1332
                     /locus_tag="VKJ77_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011658318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HMC43886.1"
                     /translation="GLRNFLLANATLFIAFSMMCGWSHSLPMMIAGRIGQGFAGGAMI
                     PTAQTIIRTRLPRSQMPVGMTMFGLIVLLGPLLGPVLGGWLAENISWSWCFFINLPVC
                     IALITLLIVGLPSDRPQWSTFFKADWVGIIGLTIGLSSLTVVLEEGQRERWFESSMII
                     ALTCVSLAGMVLIAISQLTATRPIMRLNLMRNPRYASVIIIVFAVGAGLYGVSYLLPQ
                     FLGIVSGYNAQQSGAIMLISGVPAFMIMPILPRILGKLDFRMLVIAGLLLFALSCMLD
                     IDLTAQSVGHDFFWSQLIRGFAQILALMPLNQASMAAVSREDSGDAAGLYNMARNLGG
                     SVGLAIIGTVIDRRTTFHTAMIRESLTANSLVGQERLTSSAANWFAQTGDMAYAKMRA
                     LGQIAAQIHMQATVITYSETFYLLGLALLACVPLALLLKTPRGPVSPSAGH"
     gene            1353..>1511
                     /locus_tag="VKJ77_01030"
     CDS             1353..>1511
                     /locus_tag="VKJ77_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC43887.1"
                     /translation="MFARPTTPLLLSLLASVCAISACTVGPDYAGAPQVAPDAAHASY
                     FVRTPAAGM"
BASE COUNT          231 a          478 c          448 g          354 t
ORIGIN      
        1 ggcttgcgta acttcctgct cgccaatgcc acgctgttca tcgcgttctc catgatgtgc
       61 ggatggtcgc acagcttgcc catgatgatc gctggacgca ttggccaggg cttcgcgggc
      121 ggcgcgatga tcccgacggc gcagaccatc attcgcaccc ggttaccgcg ctcgcagatg
      181 cccgtcggca tgacgatgtt cggcttgatc gtgttgctcg gtccgctgct gggaccggtg
      241 ctcggagggt ggctggcgga gaacatcagc tggagctggt gcttctttat caacctgcct
      301 gtatgtattg cgctgattac cttgctgatc gtcggactgc cgtcggaccg gccgcagtgg
      361 agcacgtttt tcaaggcgga ctgggtcggt attattggcc tcacgatcgg cctgagctcg
      421 ctgaccgtgg tgctcgaaga aggtcagcgc gaacgctggt tcgagtccag catgatcatc
      481 gcgctgacct gcgtgtcgtt ggccggcatg gtgctcatcg ccatttcgca acttaccgcg
      541 acgcggccga tcatgcgtct gaacctgatg cgtaatccgc gttatgcaag cgtcattatc
      601 attgtgtttg cggtcggcgc ggggttgtac ggcgtgtcgt atctgctgcc gcagttcctc
      661 ggcatagtgt ccggatacaa cgcgcagcaa tcgggcgcca tcatgctgat atcgggcgtg
      721 cccgcgttca tgatcatgcc catcctgccg cggattctcg gcaagctcga ctttcgcatg
      781 ctggtgatcg ccgggctgtt gttgtttgcg ttgagctgca tgctcgatat cgacctgacc
      841 gcccagagcg ttggccacga cttcttctgg tcgcagctga ttcgcggctt tgcgcaaatt
      901 cttgcgctga tgccgttgaa ccaggcgtcc atggcagcgg tctcgcgcga agattcaggc
      961 gatgcagcgg gtctctacaa catggcccgc aatcttggcg gctctgttgg acttgcaatc
     1021 atcgggaccg tgatcgaccg gcgcaccacc ttccataccg cgatgatccg cgaatcgctc
     1081 acggccaact cgctggtggg ccaggagcgc ttgacgtcga gcgccgcgaa ctggttcgcg
     1141 caaaccggcg acatggccta cgccaaaatg cgtgcgctcg gccagatcgc agcgcagatc
     1201 catatgcagg ctaccgtcat cacgtactct gaaaccttct atctgctcgg cctcgcgctg
     1261 cttgcctgcg tgccgcttgc gctcctcctg aagactccgc gcggccctgt ttcgccgtcc
     1321 gccggccatt gacggcaaag acactatcca cgatgttcgc tcgccctact acccctcttt
     1381 tactgtcgtt gctggcgtct gtttgtgcca tctcggcctg caccgtcggt cccgattatg
     1441 ccggtgcccc tcaggtcgcg cctgacgcgg cgcacgcctc ctacttcgtt cgtacgcccg
     1501 cagccggcat g
//
LOCUS       DATGBK010000072         2515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_301627, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000072 DATGBK010000000
VERSION     DATGBK010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301627"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1244)
                     /locus_tag="VKJ77_01035"
     CDS             complement(<1..1244)
                     /locus_tag="VKJ77_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HMC43888.1"
                     /translation="MTLDITQFYQTFFDEADELLADMEQLLLALDLANPDPEDLGAIF
                     RAAHSIKGGAATFGFSALTETTHILESLLDRARNNELVLRRDMIDMFLETKDVLSDQL
                     SAYRASAEPDAAAAKAICAKLEYLRDNDPADGATAAAEVAQPEQSFAEAAALAQDLAQ
                     VALSLGPNEPPPHVVEQANEAVEEDGEWAEFPATPDASHGADGAGPDGPHLKITLRGV
                     GEKDQALLTEELGNLGTVVGELKSGSDLTLWLDSDVSSDDIVAVCCFVIDEAQIAVSR
                     GNAADAAPAGGSQAAAQLEDLDEVAAKAPASEKTEPAAAAAAAAESRTKTSISPVVAE
                     APEAPKAPEGDKKTKAAAAPAAAEGSSIRVGVEKVDQLINLVGELVITQAMLAETTST
                     FDPALHDRLFNGMAQLERNARDL"
     gene            complement(1344..1724)
                     /locus_tag="VKJ77_01040"
     CDS             complement(1344..1724)
                     /locus_tag="VKJ77_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC43889.1"
                     /translation="MIKNILAVDDSAAMRQILSATFVAAGYRVVVALDGAQAYEAALA
                     EQFDLVITDQNMPAMSGLELIGKLRGHRAYANTPILVLTTESGEPFKAAARAVGATGW
                     LEKPFDPDMLTELVATLSGAEHPH"
     gene            complement(1799..>2515)
                     /gene="motB"
                     /locus_tag="VKJ77_01045"
     CDS             complement(1799..>2515)
                     /gene="motB"
                     /locus_tag="VKJ77_01045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010107083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HMC43890.1"
                     /translation="RDISSPEPGTTRMSDGTRRVQRLDEQTLRAAQGELERRDLARLH
                     DLQVKLMAAIEANPVLRQFRQQIRIDSTQQGLRIEIVDTQKRPMFALASNNVEPYMRD
                     ILREIGKALNDVPNRIVVQGHTDATQYAGGEKGYSNWELSADRANASRRELISGGMDE
                     SKVLRVLGLASTQNLNKQDAFDPENRRISILVLNHKSEEAMTREDQPATTITSNAGGV
                     GQLKPNFGSLAPALPAKPAP"
BASE COUNT          409 a          819 c          746 g          541 t
ORIGIN      
        1 aggtcgcgcg cgttgcgttc gagctgcgcc atgccattga acaggcggtc gtgcaatgcc
       61 ggatcgaagg tgctcgtggt ttcggcgagc attgcctgcg tgatcaccag ttcgccgacg
      121 aggttgatca gttgatcgac cttctccaca cccacgcgga tggaactgcc ttccgcggca
      181 gcgggcgcag cggctgcttt cgttttcttg tcgccttcgg gtgccttcgg cgcttcgggc
      241 gcttctgcga ccactgggct gatggatgtc ttggtgcggg actcggcggc agcggccgcg
      301 gccgccgccg gttccgtctt ctcagatgcg ggtgcttttg ctgccacctc gtctaaatct
      361 tccagctgtg cagcagcttg cgacccacca gcaggcgccg catccgctgc attgccgcgg
      421 ctgaccgcga tctgcgcttc atcgatcacg aaacagcaca cggcgacgat atcgtcggag
      481 gacacatccg agtcgagcca caacgtcaaa tcgctgcccg acttcaattc cccgacaaca
      541 gtacccaggt ttccaagctc ctcagtcagc agagcctggt ccttctcccc caccccccgc
      601 agcgtaattt tcaggtgagg accatccggc ccggcgccat cggcaccgtg gcttgcatct
      661 ggtgtcgctg gaaattcagc ccattcgccg tcttcctcga ccgcctcatt cgcttgctcc
      721 accacatgcg gcggcggctc gttcggcccg agcgacagcg ccacttgcgc gagatcctgc
      781 gcaagtgcag cggcctcggc gaaggactgc tccggctgcg caacttcagc cgcggcggtt
      841 gcaccgtcag ccggatcgtt gtcccgcaag tattcaagct tcgcgcaaat cgccttcgcg
      901 gcggccgcgt ccggctcagc actggcgcga tacgcgctga gctggtccga cagcacgtcc
      961 ttggtttcaa ggaacatatc gatcatgtcg cgacgcaaga ccagctcgtt gttgcgcgcc
     1021 cgatcgagca gcgactcaag gatgtgcgtg gtctcggtca gcgccgaaaa accgaacgtg
     1081 gctgcgccgc ccttgatcga atgcgccgcg cgaaagatcg cgccgagatc ctcgggatcg
     1141 gggttcgcca gatccagcgc gagcagcaac tgctccatat ctgcgagcag ctcgtcggct
     1201 tcgtcaaaga atgtttgata gaactgcgta atgtcgagtg tcatgcctgg gtcaccaccg
     1261 gatgccttgt ctgtcgtcgc tatgcgcgtc gtaaaagctg atgttttctt cgtgcctgat
     1321 acttgatgca agaacggttt gcttcagtgc gggtgttccg ctcccgacaa cgtggcgacc
     1381 agttcggtca gcatgtcagg gtcgaacggc ttttcgagcc agcccgtcgc gcccactgcg
     1441 cgcgcggcgg ctttgaaggg ctcgcccgac tcggtcgtca gcacgaggat cggcgtattc
     1501 gcatacgcac gatgtccgcg caatttcccg atcagctcca ggccgctcat tgccggcatg
     1561 ttctggtcgg tgatcacgag atcgaactgt tcggcgagcg cggcttcgta agcttgcgca
     1621 ccatctaaag ccaccaccac gcgataccct gccgcgacaa acgtcgccga aaggatttgc
     1681 cgcatggcag ccgagtcgtc gacagccaga atgttcttga tcatgatgtt tgcagccctc
     1741 tgtccgatgt tcttgtcgtg ctctggcgct ctcttgagcg tgtttcccga tgcagccgtc
     1801 atggcgctgg cttggccggc aaggccggcg ccagcgagcc gaagttgggc ttgagctggc
     1861 ccacgccgcc cgcgttgctg gtaatcgtgg tcgccggctg gtcctcgcgc gtcatggcct
     1921 cttccgactt gtggttcaac acaaggatgc tgatgcgccg gttctcggga tcgaaagcat
     1981 cctgcttgtt caggttctgc gtcgatgcaa gtccaagcac ccgcaatacc ttcgactcgt
     2041 ccataccgcc cgagatcagc tcgcgccgcg aagcgttcgc gcggtccgca gacaactccc
     2101 agttgctgta acccttttca ccgcccgcgt attgcgtggc gtcggtgtgc ccctgcacca
     2161 cgatccggtt cggtacgtcg ttgagcgcct tgccgatctc gcgcaggatg tcgcgcatgt
     2221 agggctcgac gttattgctt gcgagcgcga acatcgggcg cttctgggta tcgacaatct
     2281 cgatgcgcaa accctgttgc gtcgaatcaa tccggatctg ctgcctgaac tggcgcaaca
     2341 ccgggtttgc ttcaatcgcg gccatcagct tgacctgcag gtcgtgcagg cgagccaggt
     2401 cgcgccgttc gagttcacct tgcgccgctc tcaacgtctg ttcgtcgagc cgctgcacgc
     2461 gccgcgtacc gtcgctcatg cgggtcgtgc ccggctcggg gcttgaaata tcgcg
//
LOCUS       DATGBK010000073         2100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_139792, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000073 DATGBK010000000
VERSION     DATGBK010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139792"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..109
                     /locus_tag="VKJ77_01050"
     CDS             <1..109
                     /locus_tag="VKJ77_01050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HMC43891.1"
                     /translation="VRWFVEGRLAIDGERVVLTPPEPQWLFADIAGEGV"
     gene            106..1407
                     /locus_tag="VKJ77_01055"
     CDS             106..1407
                     /locus_tag="VKJ77_01055"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HMC43892.1"
                     /translation="MRLHGFLIGQTETLLADVLRFSGPADAATSRFFRAHPKLGHNER
                     GVIAEAVFAVLRRKMEFSHLSESGSGNLARRLALLGLMQTAGLSAVKPFISADEYQWL
                     NQVSKIDPATLPVRVRTNLPQWIYDAMTKRFDTEELALLAAALNYPAPLDLRANPIKA
                     TRELVIRTLTEAGIDAGEMPYAPFGVRVDGKPALTRLQPFQDGWIEVQDEGSQLLCSL
                     VAPRRGEMIVDFCAGAGGKTLALGAMMRSTGRLYAFDVSDRRLAKLKPRLARSGLSNV
                     NPVLIDSEHDAKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELTPKQL
                     SILTSAARLVKVGGRLVYATCSMLEAENEGVVKQFLATHPGFKLVPAREVLAEQRIDL
                     DTGDYLQLWPHKHGTDGFFAAVLERLPVAAKEAVVEEAAEE"
     gene            1689..>2100
                     /locus_tag="VKJ77_01060"
     CDS             1689..>2100
                     /locus_tag="VKJ77_01060"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HMC43893.1"
                     /translation="MLNSSLQFLANGLLDLSWWQILLFTLVMTHITIIGVTVYLHRCQ
                     AHRALELHPVVSHFFRFWLWATTGMLTGQWAAIHRKHHAKCETEEDPHSPKIFGISTV
                     LLKGVDLYRVAAQDSTTMDKYGHGTPGDWIERNLY"
BASE COUNT          421 a          618 c          622 g          439 t
ORIGIN      
        1 ggtgcgctgg ttcgtcgaag ggcgtcttgc catcgacggc gagcgtgtcg tgctcacgcc
       61 accagagccg caatggctct ttgccgacat tgccggggag ggcgtatgag gcttcatgga
      121 tttttgatag gacaaacaga aacgttgctg gcggacgttt tacgcttcag cggcccagcc
      181 gatgcggcca ccagccgctt tttccgcgcg catccgaagc tcggccacaa cgaacgcggt
      241 gttatcgccg aagcggtgtt cgctgtcctg cgccgcaaga tggagttttc gcatctctcc
      301 gaaagcggca gcggtaactt ggcgcggcgt ctcgccttgc tgggcctgat gcagacggcg
      361 ggtttgtcgg cggtaaagcc ctttatttcc gccgatgaat accagtggct caaccaggtg
      421 tcgaagatcg atccggccac cttgcccgtg cgggtgcgga ccaatttgcc gcagtggatc
      481 tacgacgcca tgacgaagcg cttcgatacc gaagagctcg cgttgctcgc cgcggcgctg
      541 aactacccgg caccgctcga tctgcgtgcg aacccgatca aggccacgcg cgaactggtc
      601 atcaggacgc tgaccgaagc cggtatcgat gcaggcgaaa tgccgtatgc accgtttggc
      661 gtgcgtgtgg acggcaagcc ggcgctcaca cgcctgcaac cgttccagga cggctggatc
      721 gaggtgcagg acgaaggcag ccagcttttg tgctcgctgg tcgcgccccg gcgcggcgag
      781 atgatcgtcg atttctgcgc aggcgctggc ggcaagacac tggcgctcgg cgcaatgatg
      841 cgttccacgg gtcgtctcta tgccttcgac gtgtcggatc gccggcttgc caaactcaag
      901 ccacgcctgg ctcgcagcgg tttgtcgaat gtgaatccgg tgctgattga cagcgagcac
      961 gacgccaaga tcaagcgcct ggccggcaag atcgaccgcg ttctcgttga cgctccgtgt
     1021 tccggcctcg gcacgttgcg ccgtaatccg gacctgaaat ggcgccagtc gccggaatcg
     1081 gtggcggagt tgacgccgaa gcagttgtcc attctgacca gcgcggcgcg gctggtaaaa
     1141 gtgggcggcc gtctcgtcta cgcaacatgc agcatgctcg aagcggaaaa cgagggcgtg
     1201 gtcaaacagt tcctcgcgac gcatccggga ttcaagctgg ttccggcacg cgaggtgcta
     1261 gctgaacaac gcattgacct tgatacgggc gactacctgc aactctggcc gcacaagcac
     1321 ggcacggacg gcttcttcgc cgccgtactt gagcggttgc cggttgctgc caaggaagcc
     1381 gtagttgagg aagcagcaga ggaataagta atatttgctc actttggtcg gcgggatcgg
     1441 gaagcgatcc ccggccaaag ctttcaaaag cgggaaattc gtgtttaccg cactaaacag
     1501 caacgcgatt tagcggtcaa atttcctgct gaccctgcgc gaaatcaaaa ttttccttaa
     1561 tcgacacaaa gacttggaac gcatgacgta aaatgccgtc gaaccacgtg cataatcctt
     1621 tcatgcaccc aacagccgtc gattcggttt tcgttcggct attttttccg cctttcaggt
     1681 aaattgcctt gctgaattca tcgcttcaat ttctcgccaa cggattgctc gacctttcgt
     1741 ggtggcagat cttgctgttc actctcgtga tgacgcacat cacgatcatc ggcgtgaccg
     1801 tctatttgca tcgttgccag gcgcaccgcg cgctggagct gcatccggtc gtcagccact
     1861 ttttccgctt ctggctctgg gccaccaccg gcatgctgac cggacagtgg gccgcaatcc
     1921 atcgcaagca tcacgccaag tgcgagaccg aagaagatcc gcacagcccg aaaatcttcg
     1981 gtatcagtac cgtactgctg aagggcgtcg atctataccg cgttgctgca caagattcga
     2041 caacgatgga taaatacggg cacggcacgc ccggcgactg gattgaacgt aatttgtacg
//
LOCUS       DATGBK010000074         2886 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_324856, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000074 DATGBK010000000
VERSION     DATGBK010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324856"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VKJ77_01065"
     CDS             <1..392
                     /locus_tag="VKJ77_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006024570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HMC43894.1"
                     /translation="VIVRHIPVVGPLYTSVKQVSDTLLSSSGNAFRKALLIRYPHSGS
                     YTIGFLTGIPGGDVVNHLTEEHVSVYVPTTPNPTSGFFLMVPRSEVIELDMSVDAALK
                     YIVSMGVVAPSMPQAQAAPRRPVDPPL"
     gene            471..2273
                     /gene="aspS"
                     /locus_tag="VKJ77_01070"
     CDS             471..2273
                     /gene="aspS"
                     /locus_tag="VKJ77_01070"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HMC43895.1"
                     /translation="MSMRSEYCGLVTEALLGQSVSLCGWVHRRRDHGGVIFIDLRDRE
                     GLVQVVCDPDRAEMFKVAEGVRGEFCVQVKGIVRARPEGTANAGLTSGKIEVLCHELN
                     VLNPSVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQQNLRLRYRVAIEVRKYLDAQGF
                     IDIETPMLTKSTPEGARDYLVPSRTNPGQFFALPQSPQLFKQLLMVANFDRYYQIVKC
                     FRDEDLRADRQPEFTQIDCETSFLTEQEIRDLFEAMIRHVFKETINVSLDEKFPVMLY
                     SEAMRRFGSDKPDLRVKLEFTDLTDAVRDVDFKVFSTPANSKDGRVAAIRVPRGGEMS
                     RSEIDSYTEFVRIYGAKGLAWIKVNDIAKGRDGLQSPIVKNLHDASITAIIERTGAQN
                     GDIIFFAADRSKVVNDSLGALRLKIGHSEFGRANGLFEKGWKPLWVTDFPMFEFDEED
                     NRYVAAHHPFTSPKDEHLEYLETDPGRCLAKAYDMVLNGWEIGGGSVRIYQEEVQSKV
                     FRALKIGAEEARIKFGFLLDALQYGAPPHGGIAFGLDRIVTMMAGADSIRDVIAFPKT
                     QRATDLLTQAPSEVDEKQLKELHIRLRAPEPKPQ"
     gene            complement(2330..2500)
                     /locus_tag="VKJ77_01075"
     CDS             complement(2330..2500)
                     /locus_tag="VKJ77_01075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43896.1"
                     /translation="MKRNLFAELMEGVAKLADQHKAQVPVREVETEVLLLTDISAKEI
                     NAHTEASISETP"
     gene            2778..>2886
                     /locus_tag="VKJ77_01080"
     CDS             2778..>2886
                     /locus_tag="VKJ77_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010114036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HMC43897.1"
                     /translation="MSKPPKIPESVLVVIHTPELEVLVIERFDRPGFWQS"
BASE COUNT          608 a          807 c          861 g          610 t
ORIGIN      
        1 atgtgatcgt gcgtcacatt cccgtggtcg gaccgctgta taccagcgtt aaacaagtgt
       61 cggacacgtt gctctccagc agcggcaacg cgtttcgcaa ggcactgctg atccgttacc
      121 cgcattcggg gtcctacacc atcggtttcc tgacgggtat tcccggcggc gacgtagtca
      181 atcacctgac tgaagaacat gtgagcgtct acgtgccgac cacgccgaat cccacctcgg
      241 gtttcttcct gatggtgccg agaagcgaag tcatcgagct cgacatgtct gtcgatgctg
      301 cgttgaagta catcgtatct atgggagtag tcgcgccgtc catgccgcaa gcgcaggccg
      361 cgccgcgtcg ccccgtcgat ccgccgctgt aatgccggcg cgctgcgaac aacgcttgag
      421 agcttgtgcg cgcgcaccgt tgatcaatga ataacgaaag acacaacatc atgtcgatga
      481 gatctgaata ctgcggtctg gtgaccgaag ccctgttggg ccaaagcgtt tcgctgtgcg
      541 gttgggtaca tcgccggcgc gaccatggcg gcgttatttt tatcgattta cgcgatcgcg
      601 agggcctggt gcaggtcgta tgcgatccgg atcgggctga aatgttcaag gtggccgaag
      661 gcgttcgcgg cgagttttgc gtgcaggtga agggcatcgt gcgtgctcgg cctgaaggta
      721 cggcgaacgc cgggctgacg agcggcaaga ttgaagtgct gtgccatgaa ctgaatgtgc
      781 tgaacccgtc ggtgacgccg ccgttccagc tcgacgacga caacctctcc gaaaccacgc
      841 gcctcacgca tcgtgtgctc gacctgcgcc gtccgcagat gcagcagaac ctgcgtttgc
      901 gttatcgcgt ggctattgaa gtacgcaagt atttggacgc gcagggtttt atcgatattg
      961 aaacgccgat gctcaccaag agcacgccgg aaggcgcgcg tgattacctg gtgccgtcgc
     1021 gtacgaaccc gggtcagttc ttcgcgctgc cgcagtcgcc gcaattgttc aagcaactgc
     1081 tgatggtggc gaactttgac cgctactacc agatcgtgaa atgtttccgc gacgaagacc
     1141 tgcgtgcgga tcgtcagccg gaattcacgc agattgactg tgaaacgtcg tttttgacgg
     1201 aacaggaaat ccgcgatctg ttcgaagcga tgatccgcca cgtcttcaag gaaaccatca
     1261 acgtctcgct cgacgagaaa ttcccggtca tgctgtattc ggaagccatg cgccgtttcg
     1321 gctcggacaa gccggacctg cgcgtgaagc tggaattcac ggacctgacg gacgccgtcc
     1381 gcgacgtcga tttcaaggtc ttcagcacgc cggctaattc gaaggatggc cgcgtggcag
     1441 cgatccgcgt gccgcgtggt ggcgagatgt cgcgcagcga gatcgacagc tacacggaat
     1501 ttgtacgcat ctacggcgcg aagggcctgg cctggatcaa ggtgaatgac atcgcgaagg
     1561 gccgtgacgg cctgcaaagc ccgatcgtga agaacctgca cgacgcatcg atcaccgcga
     1621 tcatcgagcg gaccggcgcg cagaacggag acatcatttt cttcgcggcg gatcgttcga
     1681 aagtcgtgaa cgacagcctg ggcgcgttgc gtctgaagat cggtcattcg gaattcggcc
     1741 gggcgaacgg cttgttcgaa aagggctgga agccgctgtg ggtgaccgac ttccccatgt
     1801 tcgaattcga cgaggaagac aaccgttacg tggctgcgca tcacccgttc acgagcccga
     1861 aggacgagca tctggagtat ctggaaacgg acccgggccg ctgtctcgcg aaggcatacg
     1921 acatggtgct gaacggctgg gaaatcggcg gcggatcggt gcggatttat caggaagaag
     1981 tgcagagcaa ggtgttccgc gcgctcaaga tcggcgctga ggaagcgcgt atcaagttcg
     2041 gcttcctgct cgacgcgctg cagtatggcg cgccgccgca cggtggtatt gcgttcgggc
     2101 tggaccggat cgtcacgatg atggctggcg ccgattccat ccgcgacgta atcgcgttcc
     2161 cgaagacgca gcgcgcaacg gatttgctga cgcaagcgcc gagcgaagtg gacgaaaagc
     2221 agttgaagga actgcatatt cgtttgcgtg cgccggagcc gaagccgcag taaacgtgac
     2281 tagtaacaac gtttgaaacg aaaaaggcgc cgcaggcgcc tttttcggtt tatggggttt
     2341 ctgagataga ggcttcggta tgagcgttga tctccttggc cgaaatatca gttaacaaca
     2401 gaacttccgt ctcgacttcg cgcaccggta cctgagcctt gtgctgatct gctaacttgg
     2461 cgactccttc catcaattcc gcgaatagat tgcgtttcat ttctcgttcc tcagttcggc
     2521 tgggagcacc gaataaagct caaaacggta acgtcgcagc ctggaaaaag cgctcttcgc
     2581 gacaattttt gacggaagca gcaatttatc taaaacggta cgaactgatg gaccggtagc
     2641 gtcctgatca aggccgcgcc ctccgacccg tcacccattt gcaacatccg aaacgaaact
     2701 gccgctaagt gcgccttttc ccgtttttag gttacattct tcggccagcc tcttagaaag
     2761 gccgcaacgt tcctaccatg tccaagccgc cgaaaattcc cgagtctgtc ctcgttgtca
     2821 ttcatacgcc cgagctggag gtgcttgtca ttgagcgctt cgaccggccg ggtttctggc
     2881 agtccg
//
LOCUS       DATGBK010000075         1825 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1080, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000075 DATGBK010000000
VERSION     DATGBK010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1080"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1734)
                     /gene="tssM"
                     /locus_tag="VKJ77_01085"
     CDS             complement(<1..1734)
                     /gene="tssM"
                     /locus_tag="VKJ77_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011655832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HMC43898.1"
                     /translation="MRRFLNVLTRSRTLTIVGAITLAAFLFVVADLFQIDWTWPAAIF
                     GAAVLLWLLSWGWKRHKTRRANTKLGDMLEQQAETGRGHASAEPGKQAELETLRARLS
                     AAVKTIKTSKIGQASGGAALYELPWYIVIGNPAAGKSSAVLNSGLQFPFADKNDAVVH
                     GIGGTRNCDWFFTTEGILLDTAGRYSIHEEDRSEWLGFLGLLKRYRPKAPINGIIVTA
                     SIAELTNNRPEFAINLAKNLRQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFSGNE
                     KQEYDRVWGATLPYEPDEKRDVVGLFDTRFDELHEGLKEISIAQISMNRGLKLSPGQL
                     SFPLEFSAIKPTLRTFLATLFENNPFQHKPIFRGFYFTSALQEGVTNSAATQRIAHRF
                     GLEGEGLPQAQSAFSKNGFFLRDLFSKVIFADRETVRQFASPIKTRTRYTAFFGFVAV
                     LALLLGGWTWSTIGNQQLASNVAADLDKVVKLQQNRNDLQSRLEAMDILEDRIEQLDQ
                     FRRDRPLSVSLGLYQGDRLEQHLLTEYYFGVKQLLLAPVSANLASFMKDVNAHPEQLS
                     PMTRPPESGAMA"
BASE COUNT          361 a          526 c          565 g          373 t
ORIGIN      
        1 tgccatcgca ccggattcgg gcggacgggt catgggcgac agttgctccg gatgtgcgtt
       61 gacatccttc atgaacgatg caaggtttgc cgatactggc gcgagcaaca gttgcttcac
      121 gccaaagtaa tactcggtga ggagatgctg ttcgagacga tcgccctgat acagcccgag
      181 cgaaaccgag agcggccggt cacgccggaa ctggtcgagc tgttcaatgc ggtcttcgag
      241 aatgtccatg gcttcgagcc gcgactgcag gtcgttgcgg ttctgctgca gcttgaccac
      301 cttgtcgaga tcggctgcga cattcgacgc aagctgctgg ttgccgatcg tcgaccaggt
      361 ccagccgccg agcaacagcg caaggacggc gacgaaaccg aagaacgcgg tgtagcgtgt
      421 gcgggtcttg atcggactcg caaactggcg cacggtctcg cgatccgcaa agatgacttt
      481 ggagaacagg tcgcgcagga aaaaaccatt cttcgaaaag gcactttgcg cctggggcaa
      541 tccctcgcct tccagtccga agcgatgcgc aatgcgttgt gtcgccgcgc tgttggtcac
      601 gccttcctgc agcgcgctgg tgaaatagaa accgcggaaa attggcttgt gctggaacgg
      661 attgttttcg aacagcgtcg cgaggaaggt gcgcagggtc ggcttgatgg ccgagaattc
      721 aagcggaaaa ctcagttgtc ccggcgacaa cttcaggccg cggttcatcg atatctgcgc
      781 gatgctgatc tctttcaggc cttcatgcag ttcgtcgaag cgggtgtcga agaggcccac
      841 tacatcgcgc ttttcatccg gctcgtaggg caaggtcgcg ccccagacgc ggtcgtattc
      901 ctgtttctcg ttgccgctga aaaattcggt gaaaccggtg atgaggtcgg ccttggtgaa
      961 cattacgtac accggcgcga acacttccag cttctcggtc agttcctgca cgcgctggcg
     1021 caggttcttg gccaggttga tcgcaaactc gggacgattg ttggtgagct cggcaatgct
     1081 cgccgtcacg atgatgccgt tgatcggcgc cttcggccga tagcgcttga gcaggccgag
     1141 aaaaccgagc cattcgctgc ggtcctcttc gtgaatcgaa tagcgcccgg cggtatctag
     1201 caggatgcct tcagtcgtga aaaaccagtc gcagttgcgc gtgccgccaa tgccgtggac
     1261 cacggcatcg tttttgtccg cgaacggaaa ttgcaggccc gagttcaaca cggcgctgct
     1321 tttgcccgca gccgggttgc cgatcacgat gtaccagggc agctcgtaaa gcgcagcgcc
     1381 acccgaagcc tggccgattt tcgacgtctt gatcgttttg accgcagctg acaagcgtgc
     1441 gcgcagcgtc tcgagttcgg cttgcttgcc gggttccgcc gatgcatgcc cgcggcccgt
     1501 ttccgcttgc tgttcgagca tgtcgcccag tttcgtgttg gcacgccgcg tcttgtgacg
     1561 cttccacccc cacgagagca gccacaacaa caccgcggca ccgaagatcg ccgcgggcca
     1621 cgtccagtcg atctggaaca ggtcggcaac gacgaagagg aatgcggcca gcgtgatggc
     1681 gccgacgata gtcagcgtgc gtgatcgggt caacacgttc aggaaacgtc gcatagtgca
     1741 gtcaggtctt tgaagttttc atagcaaccg cgcgaatggc ggcgacgcaa ccgcgagcgc
     1801 tggagcagcg tgtccagtga agcga
//
LOCUS       DATGBK010000076         2279 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_162995, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000076 DATGBK010000000
VERSION     DATGBK010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162995"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VKJ77_01090"
     CDS             complement(<1..218)
                     /locus_tag="VKJ77_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC43899.1"
                     /translation="MPNLRKKLPSANALFVFEAAARCGNFTRAAQELYVSQPAVSRML
                     ARMEDHLGVRLFERVRGGIELTENGRIL"
     gene            321..1397
                     /locus_tag="VKJ77_01095"
     CDS             321..1397
                     /locus_tag="VKJ77_01095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC43900.1"
                     /translation="MDARAKAGVSIRSATKRYGSVVALDDVSLDIAPGEFVSLLGPSG
                     SGKTTLLGILGGFVQPTSGAVWVGERDITYAPPHKRDIGIVFQNYALFPHMTVGENVA
                     FPLRARRQPKAGWARKVSDALAMVELSGYESSGVAQLSGGQRQRVALARAMVFEPQLI
                     LMDEPLSALDKQLRETMQIELRRLHRKLEATIVYVTHDQREALTMSDRVAVLRNGRLV
                     QIDTPERLYDRPCDAFVASFIGEATLLNVTRAGDDAVKLGSIVLRTAHPLPPGEKLLL
                     AVQTEKLVIDGGYERPGVNKLVCRVSEVLYQGESLRVFATLADGTPISLRQPGSHDAR
                     QRIPAPGAEMTVLLDPQDTIVVPA"
     gene            1478..2188
                     /locus_tag="VKJ77_01100"
     CDS             1478..2188
                     /locus_tag="VKJ77_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HMC43901.1"
                     /translation="MKLKDFKVLTFDVVGTLINFESGVLASVRRLGGAKAKDLTDDQI
                     FEPYMRGRAAFPGRSSQAMASVYQSLANELGLPADDETAAAFQRDVLDWPAFEDSVAA
                     LKRLRKHYRLVAMTNADRVALSAYAHTLGDPFDDTVCADETGVAKPDPQFFAYNRGRQ
                     AAFGYKFGEILHTAQSQYHDIGVATELGYATCWIERRQGMKGFGATPTPSAVITPTFN
                     FPTLAALADAVEAEARAA"
BASE COUNT          443 a          695 c          720 g          421 t
ORIGIN      
        1 tagaggatcc ggccgttctc cgtcagttcg atgccgccgc gcacgcgctc gaacaaacgc
       61 acgcccagat ggtcttccat gcgcgccagc atccggctga cggcgggttg gctcacgtat
      121 agctcctgcg ccgcgcgggt aaagttaccg cagcgcgcgg cggcttcaaa gacgaacagc
      181 gcattcgcgc tcggtagttt cttgcgtaga ttaggcatga cctcatgtta tgcctgatcc
      241 aacaattcgg gaattgcagc caaaaaaatc gcaccgtata ttttgaccaa ccgaagacca
      301 ccatggcgag aacacaaggt atggatgcaa gggcgaaagc aggtgtatcg atccggtcag
      361 ccacgaagcg ctacggctca gtggttgctc tggacgacgt gtcgcttgat attgcaccgg
      421 gtgaattcgt ctctctgctc gggccttcgg gttcgggcaa gaccacgttg ctcggcattc
      481 tgggcggctt cgttcagccg acctccggcg cggtgtgggt cggcgagcgg gatattacat
      541 acgcgccgcc gcacaagcgc gacatcggca tcgtgttcca gaactacgcg ctgttcccgc
      601 atatgacggt cggcgagaac gtcgcgttcc ctctgcgcgc ccggcgccag ccgaaagcag
      661 gttgggctcg caaggtgtcg gatgccctgg cgatggtcga gttgagcggt tatgaaagca
      721 gcggtgttgc ccagttgtcg ggcggccagc gtcagcgcgt ggcgctggct cgggcgatgg
      781 tcttcgagcc gcaactgatc ctgatggacg aaccgctgtc cgcgctcgac aagcagttgc
      841 gcgagaccat gcagatcgaa ttgcgccgct tgcacaggaa gctggaagcg acgattgtct
      901 atgtcactca cgaccagcgc gaggcgctca ccatgagcga ccgagttgcc gtgctgcgca
      961 atggccggct ggtccagatc gatacgccgg agcgccttta cgaccgcccg tgcgatgcgt
     1021 tcgtggcgag tttcatcggc gaggcgacgc tgctcaacgt gacccgtgcc ggcgatgacg
     1081 ccgtgaagct cggcagcatc gttctgcgaa cagcacatcc tttgccgccc ggcgagaagc
     1141 ttttgcttgc ggtgcagacc gagaagctgg tgattgacgg cgggtatgaa aggcccggcg
     1201 tgaacaagct ggtgtgccgc gtcagcgagg tgctgtacca aggcgagagc ctgcgggtgt
     1261 tcgccacgct cgccgacggc acgccgatca gcctcaggca gcccggcagc cacgacgcac
     1321 gacaacgcat tcctgcaccc ggggccgaga tgacggtctt gctcgatccg caggacacca
     1381 tcgtcgtacc ggcctgaatt ttcatatgcc cgtggtatgc ccgtgaagcc gggccatcaa
     1441 gtcaagattc aacataaact atagaggatt acgaatcatg aagctgaagg atttcaaggt
     1501 actgacgttc gacgtggtcg gcacgctgat caacttcgaa agcggtgtgc tggcgtcagt
     1561 acggcgcctg ggtggcgcaa aggcgaaaga tctcaccgac gaccagatct tcgaacccta
     1621 catgcgcggc cgagcagcgt ttcccggccg ttccagccag gcgatggcaa gcgtctacca
     1681 gtcgctcgcc aacgaactcg gcttgcccgc ggacgacgag accgctgctg cgttccagcg
     1741 cgacgtgctc gactggcccg cgttcgaaga ctcggtggca gcgctcaagc ggctgcgcaa
     1801 gcactatcgg ctggttgcca tgaccaacgc ggatcgcgtg gcgttgtcgg cctatgctca
     1861 cacgctcggc gatccgttcg acgacaccgt atgtgccgac gaaaccggcg tcgccaagcc
     1921 ggacccgcaa ttctttgcct ataaccgcgg tcgtcaggca gcattcggct ataagttcgg
     1981 cgagatcctg cacacggcgc aaagccagta tcacgacatt ggcgttgcga ccgagctggg
     2041 ttatgcgacc tgctggatcg agcgtcgtca aggcatgaag ggttttggcg cgacaccgac
     2101 gccgagtgcc gtcatcacgc cgacgttcaa tttcccgacg ctcgccgcac tcgccgatgc
     2161 cgtggaagcc gaagcgcgcg ccgcatgaag caagaggtga tccggccggg tgcgccatcg
     2221 ctatggatcg atatggcggg agcttcgcct tcagcggagg cacccgtcag cacaggcgc
//
LOCUS       DATGBK010000077         1538 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_70440, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000077 DATGBK010000000
VERSION     DATGBK010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70440"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..508)
                     /gene="sepF"
                     /locus_tag="VKJ77_01105"
     CDS             complement(65..508)
                     /gene="sepF"
                     /locus_tag="VKJ77_01105"
                     /inference="COORDINATES: protein motif:HMM:NF016363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HMC43902.1"
                     /translation="MFAKIGSWFTIHDENDDDLYENEPAATGGKRNVVPIGEGSRRPG
                     GSVAVFAPRTFGDVTEIADALRGRQVVIINLQGADRTLLQRVVDFTSGVAYTIDGRIQ
                     KLADAIYLVVPSGVNVNSAGLREQMDGDGLVDLSPKTHQNNGNRF"
     gene            complement(594..1262)
                     /locus_tag="VKJ77_01110"
     CDS             complement(594..1262)
                     /locus_tag="VKJ77_01110"
                     /inference="COORDINATES: protein motif:HMM:TIGR00044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HMC43903.1"
                     /translation="MDIAAAVAAFRVRVDAATAAHGRPAGSVRILGVTKTQTRDAVLA
                     AISAGLTDVGENYVQEAREKYRDLPAGIHTHFIGHVQTNKAKLIAGLFDVVQSIDRLE
                     AGLAVAKAARALGKTPRVLIQVNISPTERFGAPSGEAQALAQRLRDEGVEVDGVMAIG
                     PVDGNVDAAFGVARATYERVGGSTLSLGMSDDWERAIGYGSTMIRIGSAIFGPRPARE
                     GAVA"
BASE COUNT          301 a          490 c          421 g          326 t
ORIGIN      
        1 tcgtagccct gaagcgcttt tttgaacgtc ttgtgctgga tatcaatgat cgtgattttt
       61 gccattagaa acgattccca ttattttggt gtgttttcgg tgacagatcg acgaggccgt
      121 cgccatccat ttgttcgcgc agcccggcgg agttgacgtt gacgccggag ggtacgacga
      181 gataaattgc atcggccaat ttctggatgc ggccgtcgat cgtatacgcg acaccagagg
      241 tgaagtcaac gacgcgctgc agcagcgtac ggtccgcacc ttgcaaattg atgatcacaa
      301 cttgacggcc gcgcaacgcg tccgcgattt ccgtgacgtc cccaaacgtg cgcggcgcga
      361 acaccgcgac cgagccgccg gggcggcgcg agccctcacc gatcggcaca acgttgcgtt
      421 taccgcccgt agccgccggt tcgttttcgt acaaatcatc atcgttttcg tcgtggatcg
      481 taaaccacga cccgatctta gcgaacatac tcacttgggt tcgccctcct gcggaggccg
      541 aacccacctc ggcttcgcct cgtcaatcag aactatcgat aaacgcatac acttcatgca
      601 accgctcctt cgcgcgccgg gcgcgggccg aaaatcgcgg aaccaatacg aatcatcgtc
      661 gaaccgtaac caatcgcgcg ctcccaatca tcggacatac ccaaggaaag cgtcgacccg
      721 ccgacgcgct cgtacgttgc tctggcaacg ccgaaagccg catccacgtt cccgtcgacc
      781 gggcctatgg ccatcacacc gtctacttcg acaccctcat cgcgtaaacg ttgtgccagt
      841 gcctgggctt cgccggacgg tgcgccaaag cgttccgtgg gcgagatatt cacctggatg
      901 agcacccgcg gcgtcttgcc gagcgcgcgc gcggccttgg caacggcaag cccggcctca
      961 agccggtcga tgctctggac cacgtcgaac aaaccggcaa tcagcttggc cttattggtt
     1021 tggacgtgcc cgataaaatg ggtgtggatc ccggccggca gatcgcggta cttttcgcgc
     1081 gcttcctgga catagttctc accaacgtcc gtcaacccag cactgatcgc ggcgagtacc
     1141 gcgtcgcgcg tctgagtttt cgtcacaccc agaattctga ccgagcctgc gggccgtccg
     1201 tgcgcggccg tcgcggcgtc gactcggaca cgaaatgcag ccaccgcggc ggcgatatcc
     1261 atgctcgatc cggttccacc ggcacgcaat tgcttccctc acccgtcggg taaccgaagc
     1321 aggcggtctg ccggaaccgc caaaaggcca tttcatcgct cgcgttctta caggggtgaa
     1381 cttatgacat cacgcttgaa gcatgtcaat ccaatccagc tcggcatcgt ttgcgccgta
     1441 ctgtattttc tgatcgcaat tatcggggcg ttattcgtct ttgcgtttgc cggcctgatg
     1501 atgggcgcaa tttcgtcgat gatgccctta gggcaggc
//
LOCUS       DATGBK010000078         3624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_24146, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000078 DATGBK010000000
VERSION     DATGBK010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3624
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24146"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..236
                     /locus_tag="VKJ77_01115"
     CDS             96..236
                     /locus_tag="VKJ77_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HMC43904.1"
                     /translation="MTRLIALLLIVGTAALAACNTVAGAGQDLSKGGNAITNSADKHN
                     AE"
     gene            complement(438..644)
                     /locus_tag="VKJ77_01120"
     CDS             complement(438..644)
                     /locus_tag="VKJ77_01120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43905.1"
                     /translation="MTLLDRVKPGFSRCQQADSIAATSDQTVCCRMVYLIGGLIESQA
                     AEPIERITQRPEAGSRTALPPASD"
     gene            complement(772..1890)
                     /locus_tag="VKJ77_01125"
     CDS             complement(772..1890)
                     /locus_tag="VKJ77_01125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HMC43906.1"
                     /translation="MSTSLPPRLPDSDSPPPQFVPPQSKPSADVLAFPQAAADAPSES
                     ASPSADGLPGVTSPQPLLDTRGRRPFNLPGHFPFRLPATHSGRVALALCVVYLVWGST
                     YMAVHLSLESFPPLMLSGLRNLFAGIGLFIFAARRDPVWPTFAEVRNAAAVGTLLVGL
                     SSGMLAFGMRTVETGTAAVMVATVPLFATVIAAIAGRKVAKGEWVAVGLGLVGIALLN
                     HGDPSSGSTAGSLAILCGAVFWAGGSFLAGRLKLPSDLLVSTALQISLGGAMATIVAW
                     VSGERIVSMGFTPFLAYLYLMLVGSMAAYVAYAYLIRHTSPIIASSCMYVNPVVAVVI
                     GAVFLGEVITKWTVMATLIILASVGLSFWFDYKRRGLV"
     regulatory      2277..2405
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2692..>3624
                     /locus_tag="VKJ77_01130"
     CDS             2692..>3624
                     /locus_tag="VKJ77_01130"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HMC43907.1"
                     /translation="MNANPKFLSDDAVVDAAAIAPLPNSRKIYVTGSRPDIRVPMREI
                     TQSDTNESFGSEKNPPVYVYDCSGPYSDPEAKIDIRSGLPAVRQGWIEERSDTESLGG
                     LSSNFGRERAADPATADLRFKGLHRTPRRAVPGKNVSQMHYARQGIITPEMEYIAIRE
                     NQRRAEYLESLRTSGPNGEKLATMMGRQHPGQAFGAQAFGANAPKEITAEFVREEVAR
                     GRAIIPANINHPESEPMIIGRNFLVKINANIGNSAVTSSIGEEVDKMTWAIRWGGDTV
                     MDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEK"
BASE COUNT          805 a         1133 c         1074 g          612 t
ORIGIN      
        1 tctgccggac accgggtggc caggattcga acatcgggca cgctttcatg gccgaacggc
       61 cagcgtaccc gcatcaaact caaggggaat tgctcatgac tcgacttatc gctttgctgt
      121 tgatcgtcgg aactgccgca ctcgcagctt gcaacacggt ggccggcgcc ggccaggacc
      181 tttcgaaggg cggcaacgcc atcacgaatt ccgccgataa gcacaacgcg gagtaagtga
      241 ggaagctggc gacaggtagt tagcggttag tggccgctgg caacttgctg actgctgtct
      301 tcatcggctc cggggcgttg tgacgccgtg ccgacaacgg aacgggtcgt gggatgcaat
      361 caaaacgacg atcaaaaaga acctccctta gcggaggttc tttttttatg tcttagctaa
      421 cgactcgcga atgcgcatca gtcagaagca ggcggtaaag cggtccggct tcccgcctcg
      481 gggcgttgcg tgatgcgctc gatcggttcg gccgcctgcg attcgataag gccgccaatc
      541 agataaacca tacgacagca gacggtctgg tctgacgtgg cggcgatgct gtccgcctgt
      601 tggcagcgcg aaaaaccggg cttcacccgg tcgagcaagg tcatctgagg ttccgtctga
      661 ggctccgtcc tttcccggca gcgcggtcag ttcataaaaa agcggcggac cgttttttgg
      721 aattctccaa aacgggacgc cgcttttgaa ctgccagtcg tcaagccgcc atcaaaccag
      781 cccgcgcctc ttgtaatcga accagaacga cagacccacg ctcgccagga tgataagagt
      841 cgccatcacg gtccacttcg tgatcacttc gccgagaaac accgcgccta tcaccacggc
      901 caccacggga ttcacgtaca tgcagctgct cgcgataatc ggactcgtgt ggcgaatcag
      961 gtacgcatac gcgacatacg cggccatcga gccgacgagc atcaggtaaa ggtaagctag
     1021 gaacggcgtg aaccccatgc tcacaatgcg ctctcccgac acccacgcaa cgatcgtcgc
     1081 catcgcgccg ccaaggctga tctgcagtgc agtcgatacc agcaggtcgg acggcagctt
     1141 cagacgcccc gcgagaaatg agccgcctgc ccagaaaacc gcgccgcaca gaatcgcaag
     1201 actgccggcg gtcgaacccg acgacggatc gccgtgattc agcagcgcaa tcccaactag
     1261 cccaagcccg accgcaaccc attcaccctt ggccacctta cggcctgcaa tggcggcgat
     1321 gaccgtggcg aataacggca cggtcgccac catgacggca gccgtgcccg tctcgaccgt
     1381 gcgcataccg aacgcaagca tcccgctcga caaacccacc agcaacgttc cgaccgccgc
     1441 agcgtttcgc acttcggcga aagttggcca gaccggatca cggcgcgcag caaagatgaa
     1501 caaaccgatg ccggcgaaca ggttgcgcaa cccggacagc atcagcggcg ggaacgattc
     1561 cagcgacaga tgcaccgcca tgtaggtcga accccatacg aggtacacca cgcaaagggc
     1621 aagcgccacg cggccgctgt gcgtcgccgg aagccggaac gggaaatggc cgggaaggtt
     1681 gaacgggcga cgaccacggg tatcgagcaa gggttgcggg ctcgtcacgc ccggcaaacc
     1741 atccgccgat ggcgatgcgg attccgatgg cgcgtcggct gctgcctgcg gaaacgccag
     1801 cacatcggcc gaaggcttcg attgcggtgg cacgaactgc ggcggtggcg aatcagaatc
     1861 cggcaatcgc ggcggcaacg aggtagacat ccgttactcc gcgacgaaga tgattgcagc
     1921 gtcagccggc caaacgggca ggcttacgga caggctcaca accgccggtt tcgctgcacc
     1981 cgaaaccagg gggagcgaag aacggcgcgc atgccgcttg agcgtcgcgg caaaacgggc
     2041 aaggcaggac aacatgtcgg aagcagaaaa aggggtcggg caacaacgtg ccgaagctcg
     2101 ataacggctt gaaaagccgg caggagccgc cgcgagtttg ccggatcgat tggtgaaaaa
     2161 tgtcggaccg catccgggaa aacacggtgg tcgccattat gcagtaagcc atgcatacgc
     2221 acgcgtgagt gttacagatg gttgccaaca cgctacggcg aggtgtattg tggcggctgc
     2281 taacgcgggg gtcctgcgct gcacatcgca atctttcacc ggattgtccg tgtgtcgcgg
     2341 gtgagaaata ccctttgaac ctgatctgga taatgccagc gcagggaagc gttcggattt
     2401 cgcagcgcta ggggtcttct ttctttctcg cgcatcctcg ccaagtccgc ccgcctcctt
     2461 ctctgctttt cttcggtctc ccgcagctag cgtttgactc agccgatctc gtgcggtctt
     2521 gtgccaattg gtgctatttc gtgctaattc gtgcgcttgg cgttgcatcg ccggccggct
     2581 gggaaacacc cgtccccaca gcaaccatct gcatgggacc ggagtaagcg ctatgggacc
     2641 agagtaagac tctggtcgac acgccaacac cggtcgacaa aggagagccg catgaacgcc
     2701 aatccgaaat tcctgtccga cgacgctgtc gtcgacgctg ccgccatcgc gccgctgccc
     2761 aattcgcgca agatctacgt gacgggctca cgcccggaca tccgcgtgcc gatgcgggaa
     2821 atcacgcaat ccgataccaa cgaaagtttc ggcagcgaaa aaaatcctcc ggtctatgtc
     2881 tacgactgct ccggcccgta ttcagacccg gaagccaaga tcgatattcg ctccggtctg
     2941 ccggccgtcc gccagggttg gatcgaagaa cgcagcgata cggaatcgct cggtggtctc
     3001 tcaagcaatt tcggccgtga gcgcgccgcc gatccggcta ccgccgacct gcgtttcaaa
     3061 ggcttgcatc gcacgccgcg ccgcgctgtg ccgggcaaga acgtctcgca gatgcactac
     3121 gctcgccaag gcatcatcac gccggagatg gaatacatcg cgatccgcga gaaccagcgc
     3181 cgtgctgaat atctggaatc gctgcgcaca agcggcccga acggcgaaaa gctcgccacg
     3241 atgatgggtc gccagcatcc cggccaggct ttcggcgccc aggctttcgg tgcaaacgcg
     3301 cccaaggaaa tcacggccga gttcgtgcgc gaggaagtcg cccgcggccg cgcgatcatc
     3361 ccggcgaaca tcaaccaccc ggaaagcgag ccgatgatca tcggccgcaa tttcctggtg
     3421 aagatcaacg cgaacatcgg caactcggcg gtgacgtcgt cgatcggcga agaagtcgac
     3481 aagatgacct gggccatccg ctggggcggc gacacggtca tggatctctc gaccggcaag
     3541 cacattcacg aaacgcgcga gtggatcatc cgcaatagcc cggtgcctat cggtacggtg
     3601 ccgatttatc aggcgctcga aaag
//
LOCUS       DATGBK010000079         2669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1144, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000079 DATGBK010000000
VERSION     DATGBK010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1144"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1606
                     /gene="infB"
                     /locus_tag="VKJ77_01135"
     CDS             <1..1606
                     /gene="infB"
                     /locus_tag="VKJ77_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012363741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HMC43908.1"
                     /translation="VEELGHSAVAAKLDDPEAMLVEGETLEEVGERLPRPPVVTVMGH
                     VDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETPRGVITFLDTPGHEAFTAMRAR
                     GAKATDIVILVVAADDGVMPQTKEAIAHAKAGGVPIVVAINKIDKPGAAPERVKQELV
                     AEGVVPEEYGGDSPFIEVSAKTGVGIESLLENLLLQAEVMELKAPIDAPAKGLVIEAK
                     LDKGKGPVATILVTSGTLNRGDIVLAGSAFGRVRAMLDETGKPIKSAGPSIPVEIQGL
                     SEVPGAGEEVMVLPDERKAREIALFRQGKFRDVKLAKQQAAKLENMLESMTEGNVQNL
                     PLIVKADVQGSQEALVQSLVKLSTNEVRVQIVHSAVGAISESDVNLATASKAVIIGFN
                     TRADAQARKVAESNGIDIRYYNIIYDAVDEVKAAMSGMLAPEKREVITGMVEVRQIIR
                     VPKIGAIAGCMVTEGFVKRNSMVRVLRNNVVVHTGEIDSLKRFKDDAKEVRQGFECGM
                     SLKNYNDMVEGDQFEIFEVTEVARTL"
     gene            1704..2126
                     /gene="rbfA"
                     /locus_tag="VKJ77_01140"
     CDS             1704..2126
                     /gene="rbfA"
                     /locus_tag="VKJ77_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HMC43909.1"
                     /translation="MAKKRTSPNRNVQIADQIQRDLSALVRDVKDPRIGMVTFQSVEL
                     TPDYAHAKVYFTTLTGDPKETEAGLNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTVVR
                     AVEMSKLIDEANSTRAKDDVEETNADDVEEDKDDEKGA"
     gene            2130..>2669
                     /gene="truB"
                     /locus_tag="VKJ77_01145"
     CDS             2130..>2669
                     /gene="truB"
                     /locus_tag="VKJ77_01145"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007740492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HMC43910.1"
                     /translation="MNGSTRPKIPRRVLDGVLLLDKPLGLSSNDALIRAKKIYLAKKA
                     GHTGTLDPLATGLLPLCFGEATKFSQDLLEADKTYEATMRLGVRTTTGDAEGEALQTR
                     DVTCDEAAIHAAMAHFRGEIAQVPPMYSALKRDGKPLYEYARAGQTVEREARNVTIHA
                     LDLIACALPDVTFRVTCSKG"
BASE COUNT          592 a          722 c          875 g          480 t
ORIGIN      
        1 cgtcgaagaa ctgggtcaca gcgcggttgc ggccaagctg gacgatccgg aagccatgct
       61 ggtcgaaggc gaaacgctgg aagaagtggg cgaacggctg ccgcgtccgc cggtggtgac
      121 tgtcatgggt cacgtcgacc acggcaagac ctcgctgctc gattacattc gccgcgcgaa
      181 ggtcgcgtcg ggcgaagcgg gcgggattac gcagcacatt ggtgcatacc acgtggaaac
      241 gcctcgcggc gtgattacgt tcctggacac gccgggtcac gaggccttta cggccatgcg
      301 tgctcgcggt gcaaaggcaa cggacatcgt gatcctggtg gtcgcagccg acgacggcgt
      361 gatgccgcaa acgaaggaag ccatcgctca cgcgaaggcg ggtggcgtgc ctatcgtcgt
      421 ggcgatcaac aagatcgaca aaccgggtgc ggctcctgag cgcgtgaagc aggaactcgt
      481 ggccgaaggc gtcgtgccgg aagagtacgg tggtgattcg ccgttcatcg aagtgtcggc
      541 gaagacgggt gttggcatcg aaagcttgct ggaaaacctt ttgctgcaag cagaagtgat
      601 ggagctgaag gcgcctatcg atgcaccggc caagggtctc gtaatcgaag ccaagctcga
      661 caagggcaag ggcccggttg cgaccatcct ggtgacgtcg ggtacgttga atcgcggtga
      721 catcgtgctg gcgggttcgg cttttggtcg cgtccgggcc atgctcgacg aaaccggcaa
      781 gccgatcaag tcggcgggtc cgtcgattcc ggtcgagatt caaggtttgt cggaagtgcc
      841 gggcgcaggc gaagaagtca tggtcctgcc ggacgaacgc aaggcgcgcg aaatcgcgtt
      901 gttccgtcaa ggcaagttcc gcgacgtcaa gctcgcgaag cagcaggcag cgaagctcga
      961 aaacatgctc gagtccatga cggaaggcaa cgtgcagaac ctgccgttga tcgtcaaggc
     1021 cgacgtgcaa ggttcgcagg aagcgctggt gcagtcgctg gtcaagctgt cgaccaacga
     1081 agtgcgcgtg cagatcgtgc acagcgcggt cggcgcgatc agcgagtcgg acgtcaacct
     1141 ggcaacggca tcgaaggcgg tcatcatcgg cttcaacacg cgtgcggatg ctcaggcgcg
     1201 caaggtggcg gagtcgaacg gtatcgacat tcgctactac aacatcatct atgacgctgt
     1261 agatgaagtg aaggcggcca tgtcgggcat gctggcgccg gagaagcgcg aagtgatcac
     1321 gggtatggtg gaagtgcgcc agattatccg cgtgccgaag attggtgcga tcgcgggttg
     1381 tatggtcacc gaaggcttcg tcaagcggaa ctcgatggtg cgcgtgctgc gcaacaacgt
     1441 ggtcgttcac acgggcgaaa tcgattcgct caagcgcttc aaggacgacg cgaaggaagt
     1501 gcgtcaggga tttgagtgcg gtatgtcgct gaagaattac aacgacatgg tggaaggcga
     1561 tcagttcgag atcttcgaag tcaccgaagt cgcgcgtacg ctataaaaga ttcaccgctg
     1621 gactcgaggg cggagggggc ttcacgcccg ctccgccctt tttatttgcg acgtccggcg
     1681 atacacaaat tattggaaac atcatggcca agaaacgtac ttcccccaac cgcaatgtgc
     1741 agatcgcgga tcagatccag cgtgatctct ccgcactggt gcgcgatgtc aaagatccgc
     1801 gcattggtat ggtgacgttt cagagcgtcg aactgacgcc tgattacgcg cacgcgaagg
     1861 tatatttcac gacgctgacc ggcgatccga aggaaacgga agccgggtta aaccacgcgg
     1921 cggggcattt gcacaatctg ctgttcaagc gcctgcatat ccataccgtg ccgacgctgc
     1981 atttccacta cgaccagacc gtcgtgcggg cggtggaaat gtcgaagttg atcgatgaag
     2041 cgaattccac gcgcgcgaaa gacgacgtag aagaaaccaa cgccgacgac gtggaagaag
     2101 acaaagacga cgagaagggc gcctgatcga tgaacggctc tacccgcccg aagatcccgc
     2161 gtcgtgtgct ggatggcgtg ttgctgctcg acaagccgct cggactgtcg agcaacgacg
     2221 cgctgattcg cgccaagaaa atctatctcg cgaagaaggc cgggcatacg ggcacgcttg
     2281 atccgctcgc gacgggtctg ctgccgctgt gttttggcga agcgaccaag ttttcgcagg
     2341 atttgcttga agccgataaa acctacgaag cgaccatgcg cctcggtgtg cgcacaacca
     2401 cgggcgacgc cgaaggcgaa gcgttgcaga cacgcgatgt gacctgcgat gaagccgcta
     2461 ttcacgccgc gatggctcac ttccgtggcg agatagcgca agttccaccg atgtattccg
     2521 cactcaagcg cgacggtaag ccgttgtacg agtacgcgcg cgccgggcag acggtcgagc
     2581 gcgaagcacg caacgtgacc attcatgcgc ttgatctgat cgcgtgtgcg ttgccggatg
     2641 tgacgtttcg cgtgacgtgc agcaaaggg
//
LOCUS       DATGBK010000080         2028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_301778, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000080 DATGBK010000000
VERSION     DATGBK010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301778"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..404)
                     /locus_tag="VKJ77_01150"
     CDS             complement(<1..404)
                     /locus_tag="VKJ77_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase family
                     protein"
                     /protein_id="HMC43911.1"
                     /translation="MNAELQAKVERLDALLDSIAQRHANVKLASSLAAEDMLLTHAIL
                     SRSVKIGIFSLNTGRLHAETLGMIDRVKERYGYDFEQFHPQPQAVEEYVRDHGLNAFY
                     ESVDLRKSCCGIRKVEPLNRALQEVSAWVTGQR"
     gene            complement(401..940)
                     /locus_tag="VKJ77_01155"
     CDS             complement(401..940)
                     /locus_tag="VKJ77_01155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006484805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF934 domain-containing protein"
                     /protein_id="HMC43912.1"
                     /translation="MALIIKNREVVEDDWTVVRAGEDGTLPAVDALLPGKVIVPFTWW
                     KQHKKSLTSAHKKEPIGIWLAPDDEPAELVEDFDKIALIAVDFPKFSDGRGFSIGRLL
                     RERYQWTGELRAIGDVLRDQLRFHARCGFDAFAVRADKDIHDALNAFAELSIPYQGAV
                     DNPEPLFRRRGATAAGASA"
     gene            complement(973..>2028)
                     /locus_tag="VKJ77_01160"
     CDS             complement(973..>2028)
                     /locus_tag="VKJ77_01160"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015601281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HMC43913.1"
                     /translation="RTPIVGAIIKEDLPWQHLLTYCEAVLRVYNRYGRRDNMYKARIK
                     ILVKALSPAKFAQQVEEEWAHLKDGPSTLTQEELDRVSQFFAPPAYEKLPDTDASYEK
                     HLIDSKPFARWIERNVRPHKVPGYASVTLSLKPTGIAPGDATDVQMEAVADLSDEFSF
                     GEIRVSHEQNLILANVKKRDLYTVWERAKALGFATSNIGLLTDIIACPGGDFCSLANA
                     KSIPIAQAIQERFSDLDYVYDLGDLTLNISGCINACGHHHIGNIGVLGVDKDGSEWYQ
                     VTLGGEQSSGATGAHLGRVIGPSFSAEEMPDVVSQVIDTFVENRIEGERFIETYGRIG
                     IAPFKERVYASRQPAHA"
BASE COUNT          419 a          628 c          557 g          424 t
ORIGIN      
        1 cgctgacccg tgacccacgc gctcacttct tgcagcgcgc gattcagcgg ttcgacctta
       61 cgaatgccgc aacagctttt acgcagatcg acgctttcat agaacgcgtt cagaccgtga
      121 tcccgaacat actcttccac cgcttgcggc tgcggatgaa actgttcgaa gtcgtagcca
      181 taccgctctt tcacgcgatc gatcatgccc agcgtttcag cgtgcagacg gccggtgttc
      241 agcgagaaga tgccgatttt tacgctgcgc gaaagaatcg cgtgcgtgag caacatatct
      301 tcggcggcga gactgctggc tagcttgacg ttcgcatgac gttgcgcaat ggaatcgagc
      361 aacgcgtcaa gacgttcgac tttggcttgc agttcggcat tcatgcagac gctccggcag
      421 cagttgcgcc acgacggcgg aacagcggtt ccggattgtc cacagcgccc tggtacggga
      481 tgctcaattc agcgaatgca ttcagcgcgt cgtgaatgtc tttatcggcg cgtacggcga
      541 acgcgtcgaa accgcaacgc gcgtgaaagc gcaactgatc gcgcagtacg tcgccaatag
      601 cccgcaactc accggtccac tgataacgct cgcgcagcaa acggccgatg ctgaaaccgc
      661 ggccatcgct gaacttgggg aaatcgacgg cgatcagcgc gatcttgtcg aagtcttcga
      721 cgagttccgc gggttcatcg tcgggggcga gccagatgcc gatcggctcc ttcttgtgcg
      781 ccgaggtcag cgacttcttg tgctgcttcc accacgtgaa cggcacgatc accttgcccg
      841 gcaacaatgc atcgactgcg ggcagcgtac cgtcttcacc ggcgcgcacc acggtccagt
      901 cgtcttcaac cacttcgcga ttcttgatta tcaaagccat gtgcctattc cttagcaact
      961 caacgtagca acttacgcat gcgccggctg gcgcgacgcg tacacgcgtt ccttgaacgg
     1021 tgcgatgccg atacggccgt acgtctcgat gaaccgttcg ccttcaatac ggttctcaac
     1081 gaacgtatcg atcacttgcg agacgacgtc gggcatctct tccgccgaga acgacgggcc
     1141 gatcacgcgg ccaagatgcg cgcctgttgc gcccgagctt tgctcgccgc cgagcgtgac
     1201 ctgataccac tccgagccgt ctttatcgac acccagcaca ccgatgttgc cgatgtgatg
     1261 atgaccgcac gcgttgatac aacccgagat gttgagcgtc aggtcgccaa ggtcatacac
     1321 gtagtcgagg tcgctgaaac gttcctgaat agcttgcgca atcgggatcg acttcgcatt
     1381 cgcgagcgag cagaaatcgc cgcccgggca cgcaatgatg tcggtgagca aaccaatatt
     1441 cgatgtcgcg aaacccagcg ccttcgcgcg ttcccacacc gtgtacagat cgcgcttctt
     1501 cacgttcgcg aggatcaggt tctgctcgtg cgagacgcgg atttcaccga acgagaattc
     1561 atcggaaaga tcggcgacag cttccatctg cacgtccgtt gcgtcgccgg gcgcaatgcc
     1621 cgtaggcttc agcgacaacg tcactgatgc ataacccggc accttgtgcg gccgcacatt
     1681 gcgctcgatc cagcgcgcga acggcttgct atcgatgaga tgcttttcat acgaggcatc
     1741 cgtatccggc agcttttcat aagccggcgg agcgaagaac tgcgacacgc ggtcgagttc
     1801 ttcttgcgtg agcgtagaag gaccatcctt caaatgcgcc cactcttctt ccacttgctg
     1861 cgcgaacttc gcggggctca gcgccttcac gagaatcttg atccgcgcct tatacatatt
     1921 gtcgcgacgg ccgtagcggt tatacacacg caacacggct tcgcaatacg tcagcagatg
     1981 ctgccagggc agatcttcct tgatgatcgc gccgacgatc ggcgtacg
//
LOCUS       DATGBK010000081         3010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_255512, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000081 DATGBK010000000
VERSION     DATGBK010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3010
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255512"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..909
                     /locus_tag="VKJ77_01165"
     CDS             <1..909
                     /locus_tag="VKJ77_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007745224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC43914.1"
                     /translation="RNTYQFYQPEMNASVGARMDVERRLRRALRDGEFLLHYQPQVEL
                     TTGEIVGMEALVRWMDPEFGLVSPGAFIPVAEECGLIGPLSEWVLREACRQNKAWQDE
                     GLPPARMSVNLSARQFQQRDIRVLVTSVLAETGLAPHYLEIELTESAIMRNGEDTVTT
                     LTELAALGISIAIDDFGTGYSSLSYLKRFPVDRLKIDRSFVAEIGTSGGNETITSAII
                     ALAHSLELQVIAEGVETAAQLDFLVARNCDEMQGFFFSPPLPAGEIPALLLNSRTSRQ
                     LGVRQSPSDQSRAGSARGRRSLSVAT"
     gene            complement(855..1250)
                     /locus_tag="VKJ77_01170"
     CDS             complement(855..1250)
                     /locus_tag="VKJ77_01170"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HMC43915.1"
                     /translation="MTQSLQLPNKPVALRVVPQPSDANVHGDVFGGWIMAQVDIAGSI
                     PASRRANGRVATISVNSFVFKQPVFVGDLLSFYTDIVKTGNTSVTVSVEVYAQRMSLA
                     EDVVKVTEATLTYVATDSDRRPRALPALD"
     gene            1569..>3010
                     /locus_tag="VKJ77_01175"
     CDS             1569..>3010
                     /locus_tag="VKJ77_01175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HMC43916.1"
                     /translation="MRRNSPSEPAPVAKGPRNDWQTILSLLPYLATYKWRVGFALTCL
                     IGAKVANLGVPIVMKKVIDSLSSIQHLTALGRAQDSAAIILVSGVGLLVVAYAVVRLS
                     TSLFTELREMLFAKVTESAVRQLALKVFRHLHSLSLRFHLDRQTGGMSRDIERGTRGI
                     QQLVSYSLYSILPTLVEVGLVLGFFVAKYEAYYAIVTLIALVTYIVFTIKLTEWRTHF
                     RRTMNELDSKANSRAIDSLLNYETVKYFGNEEWEAQRYDENLRRYRTAAIRSQRSLSV
                     LNFGQQFIIGTGLVFILWRATQGVIAGHLTLGDLVLINTFMLQLYIPLNFLGVVYREL
                     KQSLTDMDRMFTLLGAGREVPDVPNAPPLLIKGAEVRFENVSFSYERARPILHGVDFT
                     IPAGTTTAVVGHSGSGKSTLGRLLFRFYDLDREQGGQILLDGQDIRDVAQDSLRAAIG
                     IVPQDTVLFNDSIYYNIAYGRPSASRDEVIA"
BASE COUNT          561 a          864 c          942 g          643 t
ORIGIN      
        1 cgcaacacgt accagttcta tcagccggaa atgaatgcga gcgtgggggc gcggatggac
       61 gtcgagcggc gtttgcggcg ggcgttgcgc gatggcgaat tcctgctgca ctaccagcca
      121 caagtggagc tgacgacggg cgagattgtc ggcatggaag cgctcgtgcg ctggatggac
      181 ccggagttcg ggttggtctc gccgggcgcg tttattccgg tggccgaaga atgcgggctg
      241 atcgggccat tgtccgagtg ggtgctgcgc gaggcatgcc ggcaaaacaa ggcgtggcag
      301 gatgaagggt tgccgccggc gcgtatgtcg gtgaatctgt ccgcgcgcca attccagcaa
      361 cgtgatatcc gcgtactcgt gacgtccgtg ctggcggaaa cggggcttgc gccgcattac
      421 ctcgaaatcg agctgaccga gagcgcgatc atgcgcaacg gggaagacac cgtcaccacg
      481 ttgacggagc tggcggcgct cggcatcagc attgccattg acgacttcgg gaccgggtat
      541 tcaagcctga gttatctgaa gcgctttccg gtggaccggt tgaagattga ccgctcgttc
      601 gttgcggaaa tcggcacatc gggaggcaat gaaacgatta cttcagcgat tatcgcgctc
      661 gctcactcgc tcgagttgca ggtgatcgcg gagggcgtgg agacggcggc gcagctggac
      721 ttcctcgttg cgcgcaactg cgacgagatg cagggctttt tcttctcgcc gccgttgccg
      781 gccggcgaga ttcccgcgct gttgctgaac agccggacca gccggcagct cggtgtgcgc
      841 caaagtccct ccgatcagtc cagggcgggc agtgcgcgcg gacgacggtc gctgtcggtg
      901 gcaacgtagg tcagcgtcgc ttccgtgacc ttgacgacgt cttccgccag gctcatgcgc
      961 tgcgcataga cctcgaccga taccgtcacc gacgtattgc ccgtcttaac aatatccgta
     1021 taaaagctca gcaaatcgcc gacaaacacc ggctgcttga atacgaacga attcacggaa
     1081 atagtcgcca cgcgaccatt cgcgcgacgg ctggccggaa tcgatccggc gatgtccacc
     1141 tgcgccatga tccagccgcc gaagacatcg ccgtggacgt tcgcatcgga cggttgcggc
     1201 accacgcgca gcgcgaccgg tttgttgggg agttgcaggg attgggtcac gagcggattt
     1261 ccttgaaaga gtgacgggat accggcgggt cagcgcggca tggcaccttc tgcgacaatg
     1321 cacgattaaa cgatgttgct ttgcgcccga acgagttggt ttcattcaca cccgttttag
     1381 cgcggtttta cggcgtttgg cggaggtttg actgacgttg cctacgtcct tgcccacgcc
     1441 gggaaacatc gaattgtacg ggaaagcccg cattttgaga cgggcgcccg tcccgcgata
     1501 cctcgctcgt ccgcaccgca atgacaccct gtgacactgc ggcgcggacc tctgcagacc
     1561 ttgaatccat gcgccgcaac tctccttccg aaccggctcc cgtcgcgaaa ggcccgcgta
     1621 acgactggca gaccattctc tcgttgttgc cgtacctggc cacgtacaaa tggcgcgtcg
     1681 gctttgcgtt gacctgcctg atcggcgcga aagtcgcgaa tctgggcgtg ccgatcgtga
     1741 tgaaaaaggt catcgacagc ctcagttcca tccagcatct gaccgcgctc ggacgcgcgc
     1801 aggattccgc ggcgatcatt ctggtgagcg gcgtgggtct gctggtcgtg gcgtatgcgg
     1861 tcgtgcgcct gtcgacttcg ctcttcaccg agttgcgcga aatgctgttc gcgaaggtta
     1921 ctgaaagcgc cgtgcggcaa ctcgcgctga aagtgttccg gcatttgcat tcgctgtcgc
     1981 tgcggtttca tctcgaccgg cagaccggcg gcatgtcacg ggacattgaa cgcggcacgc
     2041 gtggcattca gcaactcgtt tcgtattcgc tttacagcat cctgccgacg ctcgttgaag
     2101 tcggcctcgt gctcggattt tttgtcgcga aatacgaagc gtattacgcg atcgtcacgt
     2161 tgatcgcgct ggtgacgtac atcgtgttca cgatcaagct caccgaatgg cgcacgcact
     2221 tccggcgcac gatgaacgaa ctcgattcga aggcgaattc gcgtgccatc gattcattgt
     2281 tgaactacga gacggtgaag tatttcggca acgaagagtg ggaagcgcag cgttacgatg
     2341 aaaatttgag gcgctatcgc acggcggcca ttcgctcgca gcgttcgttg tcagtgctta
     2401 acttcggaca gcaattcatt attggcacgg ggctcgtgtt tattctctgg cgcgcgacgc
     2461 aaggcgttat tgcggggcat ctgacgctcg gtgatctcgt gctgatcaac acgttcatgc
     2521 tgcagttgta tatcccgctg aatttcctgg gcgtggtgta tcgcgagctc aagcagagtc
     2581 tcaccgatat ggaccgcatg ttcaccttgc tcggcgccgg gcgtgaagtg ccggatgtgc
     2641 cgaacgcgcc gccgcttttg atcaaaggcg ctgaagtgcg cttcgagaac gtgagcttct
     2701 cgtatgagcg cgcacggccg atcctgcatg gcgttgattt cacgatccct gcagggacta
     2761 cgactgcggt tgtcggccac agcggttcgg gcaagtcgac gctcggccgt ctgctgtttc
     2821 gtttttatga tctcgaccgt gagcaaggcg ggcagattct gctggacggc caggatatcc
     2881 gcgatgtcgc gcaggactcg ttgcgcgcag caatcgggat cgtgccgcag gacacggtgc
     2941 tcttcaacga ttcgatctac tacaacatcg cgtacggccg gccatcggct tcacgcgatg
     3001 aagtgatcgc
//
LOCUS       DATGBK010000082         3966 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_232303, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000082 DATGBK010000000
VERSION     DATGBK010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3966
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232303"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..647
                     /locus_tag="VKJ77_01180"
                     /pseudo
     CDS             96..647
                     /locus_tag="VKJ77_01180"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
     gene            complement(707..1498)
                     /locus_tag="VKJ77_01185"
     CDS             complement(707..1498)
                     /locus_tag="VKJ77_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HMC43917.1"
                     /translation="MLATEREAFERDGAAVLRGVFKDWVAPLREGVEYNATHPGPSFR
                     NYTPEKTTGRFFGDYCNWQRIEPFRDFVEHSPAAAVAQALMGSQRARIFHEHVLVKEA
                     GAAKLTPWHHDEPYYCVSAEQAVSLWIPLDPVPRETCVEFVAGSHKWGKLFRPRKFSG
                     VAYDHKSDRLEELPDIDAHRDDYRILGWDLEPGDAIAFNFHTVHGAPGNVAGQQSRRV
                     VSFRWLGDGAYYVDRGGETSPPYPELAGRLASGDPLPEAEFPFIV"
     gene            complement(1613..2440)
                     /locus_tag="VKJ77_01190"
     CDS             complement(1613..2440)
                     /locus_tag="VKJ77_01190"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC43918.1"
                     /translation="MQSQRHLVLSERIASKWLRVHSALILFFLIAPILAIVPLSFNTG
                     SYFSYPMQGFSLHWYAKALGSSDWQRAFLNSIGIGTASTALATCLGTLAALGLSRANF
                     PFRAVIMPLLISPMIIPIVVVAAGFYLVFAPLGLVNSYVGVVLAHAALGTPFVVITVT
                     ASLLSFDQSLIRAASGLGATPWIAFRRVTLPLIAPAVATGSVFAFATSFDEVIVILFI
                     GGPDQRTVPRQMWSGIRDSIDPSILAVATMLILFAVALFTSINWLRGRSAAAALPGN"
     gene            complement(2453..3709)
                     /locus_tag="VKJ77_01195"
     CDS             complement(2453..3709)
                     /locus_tag="VKJ77_01195"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC43919.1"
                     /translation="MQEPAEREPSTGSGSGAGGRAAYARTRRRASAQALLLALPLLLF
                     LLATFIAPIAILLSRSVENREVPVNLPALSQALKAWSGEGVPDEHTFAILAADMRRAS
                     EAGQLGTVARRLNFYLPEFRSLLMRTARQLPETAPPAWKPALIELDPRWGTHDIWRIL
                     KRSAVSPTPDYLLAAVDATVTPDGSVASLPADSSVFINAFARTVWISASVTLLCLVLG
                     YPVAYLLATLPAAKSNRLMLLVIVPFWTSLLVRTTAWYVLLQPGGVINSLLMGMGLVS
                     HPLPLLFNRTGVLIGMTHILLPYMILAIYSVMKSVSPVYMRAAQSLGAHPVTAFIRIY
                     VPQTLPGVGAGCFLVFVLALGYYITPALLGGAGDEMISQLIAAQTNEQLNWGLAGALS
                     AYLVIFAAVFYFVFNRLVGIDRLRFG"
     gene            complement(3742..>3966)
                     /locus_tag="VKJ77_01200"
     CDS             complement(3742..>3966)
                     /locus_tag="VKJ77_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC43920.1"
                     /translation="FIVSASSAQSYADLTKYIAYAPPRKDAIPLIAKDRLNDLPTAPA
                     NFKHALQINASFWADNADQINKRFQVWLTQ"
BASE COUNT          840 a         1220 c         1241 g          665 t
ORIGIN      
        1 gccgcaaaga cgtcgtggta tacgctgtta cgtgaccatc gggcaaagcc gagcaaagcc
       61 cacgtacacg ctgctccaag gctgaacggt tatgggaggt tgcggaggca aatgacctcg
      121 tggtgcacat caacccaccg atgctgtcga tcgggcacga ggcgctcatg caataccgcc
      181 tcaacgaggc ggttggccga cccttcgact cgaccgtgaa cggcgcccgg atgatcgcct
      241 ccggtgtgtt cgatcgccac ccgaagctgc aggtgctgat tgtccacatg ggcggcggac
      301 tcgcgtcgat cctaggacgc ctcgaattca attggcacct caactacaac gggattcgca
      361 acccgccggc ggccaagcct tacacaaaca agcggccgcc atccgactac ttcaagacca
      421 acatcctgct cgactgcatg gggttcagcc ccattggact gcgagccgcc gttgagatgt
      481 gcggtgtgga ccgagtggtc ttcggctccg acttcggccc ggtgccatac gggatcaaag
      541 agcatgtgca gatcgtcgag gacgtgcctc cgagcccggc tgagcgcgaa ctggtgttct
      601 ggaagaccag caaccgagta ttccgcctgg gtctacggca cgggtgatga aacaccgcgc
      661 gcagcggatg cgatcggcat ccgctgcccc gtgatgtcaa cacgccttag acgatgaacg
      721 gaaactccgc ttcgggcagc ggatcgccgg aagcaagccg gccagccagt tcaggatagg
      781 gcggtgaggt ctcgccgccg cggtccacgt agtacgcgcc atcgccgagc catcggaacg
      841 acactacccg ccgcgattgc tgacccgcta cgtttcccgg tgctccgtgt accgtatgaa
      901 agttgaacgc tatggcatct cccggttcca gatcccaacc gagtatccga tagtcatcgc
      961 ggtgcgcatc gatgtccggc aactcttcca gccgatccga cttgtggtca tacgccacgc
     1021 cgctgaactt gcgcggacgg aacagctttc cccatttgtg tgacccggcc acgaattcga
     1081 cgcacgtctc gcgaggcacc ggatcgagtg gaatccatag gctgaccgct tgttcggcgc
     1141 tgacgcagta gtagggttca tcgtgatgcc atggcgtgag cttcgccgcg cccgcttctt
     1201 tcaccagcac atgttcgtga aagatgcgtg cacgctgcga gcccatcaga gcctgagcca
     1261 ccgccgcggc cggactgtgc tcgacaaaat ccctgaacgg ttcaatgcgt tgccagttgc
     1321 aatagtcgcc gaaaaaccgt ccggtcgttt tctcgggtgt gtagttcctg aacgaggggc
     1381 ccggatgagt ggcgttgtat tccacgcctt cacgcaaggg cgcgacccag tctttaaata
     1441 ccccgcgcaa gaccgcggca ccgtcgcgct cgaacgcttc ccgttctgta gccagcatgc
     1501 tgctctcctt taatgtttaa tcaagcggcg ctatgcgtcg gtctcctgcc aacgcggtcg
     1561 ccactagcga tgaaagcgag ccggcaaaga caatcgtcgg ctccctaagt ctttagtttc
     1621 ccggcaatgc cgctgccgca ctgcgtccac ggagccagtt gatgctggtg aacagcgcca
     1681 ccgcgaacag gatcagcatg gtggccaccg cgagtatcga tggatcgatc gaatcgcgaa
     1741 tgccgctcca catctgacgc ggtacggttc gctgatccgg gccgccgata aaaagaatca
     1801 cgatgacttc atcgaacgag gttgcgaacg caaacacgct gcccgtcgcc acggccggtg
     1861 caatcaacgg caacgtgacg cggcgaaagg cgatccatgg cgtggcccca agtcccgacg
     1921 ccgcacgaat gaggctctgg tcaaacgaga gcagggaggc agtcacggtg atcaccacga
     1981 acggcgtgcc gagcgccgca tgcgcgagca cgacgccaac gtaggaattg acgagaccga
     2041 gcggcgcgaa gaccagatag aacccggcgg caacgaccac gatggggatg atcatcggcg
     2101 agatgagcag cggcatgatg accgcgcgaa acggaaagtt cgcccggctc aggcccagtg
     2161 ccgcgagcgt gccgaggcag gtggccagcg ccgtggacgc tgtgccaatg ccgatgctgt
     2221 tgaggaatgc acgttgccag tcgctgctgc cgagcgcctt cgcataccaa tgcagagaga
     2281 agccttgcat cggataagaa aagtacgagc cggtgttgaa cgacagcggc acgatggcca
     2341 ggatgggcgc gatcaggaag aacaggatga gcgccgaatg cacgcgcaac cacttcgacg
     2401 caatgcgttc ggagagtacg agatggcgct ggctttgcat gagtcccacc ccttagccga
     2461 agcgcagccg gtcgatgccg acgagccgat tgaacacgaa atagaacacg gccgcgaaga
     2521 tcacgagata cgccgacagc gcaccggcga gcccccagtt gagctgttcg ttggtctgcg
     2581 ccgcgatcaa ctggctgatc atttcgtcac ccgcgccgcc cagcaatgca ggcgtgatgt
     2641 agtaacccag cgcgagcacg aacacgagga agcagcctgc gccgacaccc ggcaaagtct
     2701 gcggcacata gatgcggatg aacgccgtga ccggatgcgc gccaagcgat tgagccgcgc
     2761 gcatgtagac cggcgacacg ctcttcatga ccgaatagat cgcgaggatc atgtaaggca
     2821 ggaggatatg cgtcatgccg atcagcacgc cggtgcgatt gaacaagagc ggcaaaggat
     2881 ggctgacgag acccatcccc atgagcaggc tattgatgac gccgccgggt tgcaggagca
     2941 cgtaccacgc ggtcgtgcgc acgagcaacg acgtccagaa cggcacgatc accagcagca
     3001 tcaggcgatt gctcttggct gccggcaggg tggcgagcaa atacgcaacc ggataaccga
     3061 gcacgaggca cagcagcgta accgacgcac tgatccacac ggtgcgcgca aacgcgttga
     3121 tgaacaccga gctatcggcg ggcagggagg cgaccgaacc gtcgggcgtg acggtggcgt
     3181 cgacggcggc taacagatag tcgggcgtcg gcgatacggc ggaacgcttc aggattcgcc
     3241 agatgtcatg cgtgccccaa cgcggatcaa gttcgatcag tgccggtttc caggcaggtg
     3301 gtgccgtctc gggcaactgg cgcgcggtgc gcatcagcaa gctgcgaaac tccggcaggt
     3361 agaaattcag ccgccgggcg acagttccca attgccctgc ctcggatgcg cggcgcatat
     3421 ccgctgcgag gatggcaaag gtgtgctcgt cgggcacgcc ttcaccgctc cacgccttga
     3481 gcgcctgtga caaggccggc aggttcactg gcacctcgcg attctcgaca ctccgtgaca
     3541 gcaggatcgc gatgggcgca atgaaggtgg cgagcaggaa caacagcagc ggcagcgcaa
     3601 gcaggagcgc ctgggccgag gcccggcggc gcgtcctcgc gtacgccgca cggccgccgg
     3661 cccccgagcc ggaaccggtg gacggttcgc gctcagccgg ttcctgcaga ttgctggtca
     3721 ctgtcacggt cacgggtcgc cttactgtgt cagccagacc tggaagcgct tgttgatctg
     3781 gtcggcgtta tccgcccaga agctcgcgtt gatctgcagc gcatgcttga agttcgcggg
     3841 agccgtcggc aagtcgttca ggcgatcctt ggcaatcaac ggaatcgcat ccttgcgcgg
     3901 cggcgcgtaa gcaatgtact tcgtcaggtc tgcgtagctt tgcgcgctcg aggcggaaac
     3961 gatgaa
//
LOCUS       DATGBK010000083         1584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_255529, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000083 DATGBK010000000
VERSION     DATGBK010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255529"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1584)
                     /gene="treS"
                     /locus_tag="VKJ77_01205"
     CDS             complement(<1..>1584)
                     /gene="treS"
                     /locus_tag="VKJ77_01205"
                     /EC_number="5.4.99.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047471 - maltose
                     alpha-D-glucosyltransferase activity [Evidence IEA];
                     GO_process: GO:0005991 - trehalose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maltose alpha-D-glucosyltransferase"
                     /protein_id="HMC43921.1"
                     /translation="YPSPRRDDGYDIADYRNVHPDYGTLTDVKHFIQEAHARGIRVIT
                     ELVINHTSDQHPWFQRARLAKPGSNHRNYYVWSDTDKKYEDTRIIFIDSEPSNWTHDP
                     VAGQYYWHRFFNHQPDLNFDNPAVLKEVLQVMRFWLDMGIDGLRLDAVPYLVEREGTN
                     NENLPETHAILKKIRATIDAEYPNRMLLAEANQWPEDVKEYFGDEDECHMAFHFPLMP
                     RIYMSIASEDRFPITDIMRQTPDLAPTNQWAIFLRNHDELTLEMVTDSERDYLWNTYA
                     SDRRARLNLGIRRRLAPLMERDRRRIELINSLLLSMPGTPVIYYGDELGMGDNIHLGD
                     RDGVRTPMQWSSDRNGGFSRADPEQLVLPPVMGSLYGYDAVNVESQSRDPHSLLNWTR
                     KMLTVRRGKQAFGRGTIRFLRPNNRKILAYLREVEGEPAILCVANLSRAPQAVELDLS
                     EYAGSVPLEMTADSAFPPIGQLTYLLTFPPYGFLWFQLCPGNQRPAWSQAPSEQLPEF
                     VTMVIRAGQTGPTPENVRLL"
BASE COUNT          299 a          468 c          492 g          325 t
ORIGIN      
        1 aagcaaccgc acgttttccg gcgtcgggcc ggtctggccg gcgcggatca ccatggtcac
       61 gaattcaggc aattgttcgg atggcgcctg gctccatgcc ggacgctgat tgcccgggca
      121 caactggaac cacaggaatc cgtacggcgg gaacgtcagc aaatacgtga gctggccgat
      181 cggcgggaac gcggaatccg cggtcatttc cagcggcacc gaaccggcgt actcggacag
      241 gtcgagttct acggcctgcg gcgcccgcga aagattcgcc acgcacagga tcgccggttc
      301 gccctcgacc tcgcgcagat acgcgaggat cttgcggtta ttcgggcgca gaaaacgtat
      361 cgtgccgcgt ccgaacgctt gcttcccgcg acgcaccgtg agcatcttgc gggtccagtt
      421 gagcagcgag tgcggatcgc gactctgcga ttccacgttc acggcgtcat acccgtagag
      481 cgagcccatg acgggcggca gcacgagctg ctctgggtca gcgcgcgaga atccaccgtt
      541 tctgtccgat gaccattgca tcggcgtacg cacgccgtcg cgatcgccca ggtgaatgtt
      601 gtcgcccatg ccgagttcgt cgccgtaata aatcacgggc gtgccgggca tggacagcag
      661 cagcgaattg atcagttcaa tccggcgacg atcccgttcc atcagcggtg cgagacgccg
      721 gcgtatccca agattcaaac gcgcgcggcg atcgctcgcg tacgtgttcc acaaataatc
      781 gcgctcggaa tccgtgacca tttccagcgt gagttcgtcg tgattgcgca ggaaaatcgc
      841 ccactggttg gtcggcgcga gatccggcgt ctgccgcatg atgtccgtga tcgggaagcg
      901 gtcctcgctc gcaatcgaca tatagatgcg cggcatcagc gggaagtgga aggccatgtg
      961 gcattcgtct tcgtcgccga aatactcctt cacgtcttcc ggccattggt tcgcttcggc
     1021 cagcaacatg cggtttggat attccgcgtc gatagtcgcg cggatcttct tcaaaatcgc
     1081 gtgcgtttcc ggcaggttct cgttgttcgt gccttcacgt tcaaccaggt acggcacagc
     1141 atccagccgc aaaccgtcga tccccatgtc gagccagaag cgcatcacct gcagcacttc
     1201 cttgagcacg gcggggttgt cgaagttcag gtcaggctgg tggttgaaga agcggtgcca
     1261 gtaatactgg ccggcgaccg gatcatgcgt ccagttggac ggctccgaat cgatgaaaat
     1321 aatccgcgtg tcttcgtact tcttgtcggt atctgaccag acgtagtagt tgcgatggtt
     1381 cgagcccggc ttcgcgaggc gagcgcgctg gaaccacggg tgctggtcgg acgtgtggtt
     1441 gatcaccagc tcggtaatca cgcgaatgcc gcgcgcgtgc gcttcctgga tgaaatgctt
     1501 gacgtcggtg agcgtgccgt aatcgggatg cacgttgcgg taatcggcga tgtcgtatcc
     1561 atcgtcacgt cgtggcgacg gata
//
LOCUS       DATGBK010000084         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_301833, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000084 DATGBK010000000
VERSION     DATGBK010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301833"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..1440
                     /locus_tag="VKJ77_01210"
     CDS             202..1440
                     /locus_tag="VKJ77_01210"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC43922.1"
                     /translation="MSFDHRKLSRRSVLAGTAAGAVLLGAPAIVRAQTKALKIAVLLP
                     QSGYLAQAGQSCHRGALVAPSVLSDFGHQVELIHIDMESNPDVARTQTERAINEGAQC
                     IVGAFDSAGTLAIAQVCEQRQVPLIVNIGAAPQLTEQGYKFLVRNFPTGGMLVKNGLH
                     QIQALIDATKIAPKTAVFLHANDNFGMAQRKGMDALFPTAGLPFKLLESIAYDPKAQD
                     LSVEVTKIRGLNPDLLLVVTRAADAIKLVRDTVRQKFQPMGIISPGAPGLYDEEFYKA
                     LGPLADYHIDALPWANPKSKVTQALEAAFKKQQPNYRFAVECFNVGFTFDALLIAADA
                     FKRAGTATGPELMKALMATNLVDHTMIGPPIKFDAKGQNVDIPSGCVQNRAQTPTVVL
                     PAEVATMTPVLPMPPWQGRT"
     gene            1551..>2032
                     /locus_tag="VKJ77_01215"
     CDS             1551..>2032
                     /locus_tag="VKJ77_01215"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC43923.1"
                     /translation="MTAITLNVIVQGVLTGLVYGLMALGLSVIFGVMRVVNFAHGEFT
                     VIAMYAAFILFEVLHLDPLIALLPIAAVFFGIGYLLQRTLITPFIGRAEHEQFILLVG
                     LATVIVNGILLIFGPDARPINLPYSFDSYAVGPLFIDKVRVLAAVAAVAVAAALFLFF
                     R"
BASE COUNT          394 a          641 c          581 g          416 t
ORIGIN      
        1 aaagcctgcc tgacgggcaa accgccgtcg ccaaaaggat aatgccgttt gcatgctaag
       61 gacttgtggg gacccaacgt ccacgcaata attgtgctta tcaccattgc attgcaataa
      121 attattctcc gtttggttgg aatcgcagcg atttaggact aacaagccgc agccagccag
      181 ccggcaccca ggaggaaatt catgtcgttc gaccatcgca aactcagtcg tcgcagcgtg
      241 cttgcgggca ccgcagccgg cgcggttctt ttgggcgctc ccgcgatcgt tcgcgcgcaa
      301 acgaaagcgc tcaagatcgc ggttctactg cctcaatccg gctacctggc tcaggccgga
      361 cagagctgcc atcgcggcgc tctggtcgcg ccgtcggtgc tgtccgactt cggccatcag
      421 gtcgaactca tccacatcga tatggaatcc aatcccgacg tggcgcgaac ccagaccgag
      481 cgtgccatca acgaaggtgc gcagtgcatc gtcggcgcgt tcgattccgc cggcacgctc
      541 gccatcgctc aggtctgcga acaacggcag gtgccactga tcgtcaacat cggcgcggca
      601 ccgcaactga ccgagcaggg ctacaagttc ctggttcgca acttcccgac cggcggcatg
      661 ctggtcaaaa acgggcttca tcaaattcaa gcgctgatcg acgctaccaa gatcgcgccg
      721 aagaccgcag tcttccttca cgccaacgac aatttcggga tggcgcagcg caagggcatg
      781 gatgcgttgt tcccgactgc aggactgccg ttcaagctgc ttgaatcgat cgcctatgat
      841 ccgaaggcgc aggacctctc ggtcgaagta accaagatcc gcggcctcaa tccggacctg
      901 ctgctcgtgg tcacgcgagc ggcggacgcc atcaagctgg tccgtgatac ggttcggcag
      961 aaattccagc cgatgggcat catttccccg ggcgcacccg gtctgtacga cgaggaattc
     1021 tacaaggcgc tcggtccgct cgccgactac cacatcgatg cgctgccgtg ggccaatcca
     1081 aaatccaaag tcacgcaggc gctcgaagcc gcgttcaaga agcaacaacc gaattaccgg
     1141 ttcgccgtgg aatgcttcaa tgtcggcttc actttcgatg cactcctgat cgcagccgat
     1201 gcgttcaagc gcgccggtac cgcaacggga ccggaactga tgaaggcgct gatggcgacc
     1261 aatctggtcg atcacaccat gatcggaccg ccaatcaagt tcgacgccaa gggccagaat
     1321 gtcgacattc cgtcgggatg tgttcagaac cgggcgcaga cgccgacggt cgtgttgccc
     1381 gcagaggtcg cgaccatgac gcccgtgctg ccgatgccgc cgtggcaggg gcggacttga
     1441 tccgggctga cggcccgatc aaaggcacca cgcctcggcg tggtgcctga tttctgttct
     1501 gacgtttctt acatatcgat cgcagcagcg ctgctgggct ggagttggca atgacggcaa
     1561 tcaccttgaa tgtcatcgtt caaggcgtgc tgaccggtct cgtctatgga ctgatggcgc
     1621 tggggctttc ggtgatcttc ggcgtgatgc gcgtggtcaa cttcgctcac ggcgaattca
     1681 ccgtcatcgc catgtacgcg gctttcatcc tgttcgaggt tctgcatctc gacccgctga
     1741 tcgcgctgct gcctatcgca gccgtgttct tcggcatcgg ttacctactg caacgtaccc
     1801 tgatcacgcc attcatcggc cgcgccgaac acgagcagtt catcctgctg gtcggactgg
     1861 ctaccgtcat cgtcaacggg attctgctga tcttcggtcc tgacgcgcgg ccgatcaacc
     1921 tgccctacag cttcgacagt tacgctgtgg ggccgctgtt catcgataag gtccgcgtgc
     1981 tggcggccgt cgccgccgtt gccgtggcgg ccgcactgtt cctgttcttc cg
//
LOCUS       DATGBK010000085         3790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_139974, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000085 DATGBK010000000
VERSION     DATGBK010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3790
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139974"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VKJ77_01220"
     CDS             complement(<1..490)
                     /locus_tag="VKJ77_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013691229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC43924.1"
                     /translation="MARLDSALRMVLRALTMLGLAAIANVVLAQNSPVQIGFAGPLTG
                     ASANFGKDLEMGARLAIDEANAANIVINGKPLQLTLDSQDDQADPKAAVQVAQRFVDA
                     NVAAVVGHFNSGTTLAASSVYNRGGIPQIIPAASNPSITHQGFKLMYRPYGTDNTVAG
                     AAA"
     gene            complement(1091..2368)
                     /locus_tag="VKJ77_01225"
     CDS             complement(1091..2368)
                     /locus_tag="VKJ77_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HMC43925.1"
                     /translation="MSTLTQMIERRRRLLGPAYRLFYDEPVHFVRGDGVWLYDVDGKR
                     YLDAYNNVASVGHCHPRVVEAISRQASTLNTHTRYLHETVLDYTERVLATFPGEPGHA
                     MWTCTGSEANDLAYRIACNYTGGTGLIVTNFAYHGVTVAISQASPSLGQYVQRGPHVR
                     TVRAPDTYRDAPGDIGAALAAAVRDAAADMRAAGIRPAALLVDTVLSSDGVYTHPAGF
                     LKLAVAAIREEGGIFIADEVQAGLGRTGDAMWGFMRHGVSPDIVSMGKPMGNGHPLAG
                     IVAKPELLERFGRESRYFNTFGGNPVSAAAGLAVLDVVRDEQLLDNAQRVGAYLRSKL
                     LELKDRHEVIGDVRGAGFFIGVELVLDRAGKSPATHEASRVVNALRDRQVLCSTTGER
                     ANILKIRPPLVFGLEHADLFVDTLDDVLHTLMT"
     gene            complement(2374..3429)
                     /locus_tag="VKJ77_01230"
     CDS             complement(2374..3429)
                     /locus_tag="VKJ77_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006161726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HMC43926.1"
                     /translation="MSIHDVLSQPSPAIDVAVARDIAIRQFGMTSSVTPLAGERDRNF
                     HVRRDDGREYVIKFSHPAEQISIADFQAQALEHIEKVAPELPVQRVVPTLGGDRIYVH
                     AQPAQALRVVRMFSYLPGLPLPEAEVSAGQVRSLGATLARLGLALRDFVYPAQPMKLP
                     WDLQHAEDLTELTVHLRDPAQRALAERHLERFRDHALPILGTLAPQAIHNDLNIHNVL
                     VAPGNHERITGILDFGDMVSAPRIIDVAVAASYQLGTGDALLTNVLEFVSAYHEVSPL
                     KAIELEVLFDLIVARLVMIVTISGWRAALYPENAKYILRNNAVSWRRLSECDRAQRDD
                     VLAALRHACTQPATLTR"
     gene            complement(3488..>3790)
                     /locus_tag="VKJ77_01235"
     CDS             complement(3488..>3790)
                     /locus_tag="VKJ77_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HMC43927.1"
                     /translation="NINRPLPRGMRVDAYLDVLRETLAQIRAFEPGALVIALGLDAYE
                     KDPYKGLAITTEGFHRIMAEIACLGLPTVIVQEGGYLSDALGNNLASALRGFESAA"
BASE COUNT          807 a         1131 c         1110 g          742 t
ORIGIN      
        1 ccgccgccgc tccagcaacc gtattgtcgg tgccgtaggg gcgatacatc aacttgaaac
       61 cctggtgggt gatgctcgga ttggacgctg ccggaatgat ctgcggaatc ccgccccggt
      121 tgtaaactga ggacgccgcc agcgtggtgc ccgaattgaa gtgcccgacc acggcggcga
      181 cgttcgcatc gacaaacctt tgtgcgactt gcaccgccgc tttcggatca gcctggtcgt
      241 cctgggaatc gagcgtgagt tgcaacggct tgccattgat cacgatgtta gcggcattgg
      301 cttcatcgat agctagacgt gcgcccattt ccagatcctt gccgaaattc gcggatgcac
      361 cggtcaaagg accagcgaag ccaatctgca cggggctgtt ttgggcgagc acgacgtttg
      421 cgatcgctgc gagacctagc attgtcaggg ctcgcagcac cattcgcaaa gccgagtcga
      481 gtcttgccat tttgaactcc ttttcaggtc gcgtgcgggc gacactgggt tgcataacat
      541 gtgcggttga aaggaatgta gcacggccat taacaagcaa ataattgata gcatcactaa
      601 attaaagata tattccccac cattcgaatg gcctgaagcc gcatgcagag gaccgattgt
      661 ccggacaggc agttcgaatt tttaagtcga tcgcttctag caatcaagct gccgactgga
      721 ttgctggagg aagtgcgaat gtgcctcatc cggcgtctgg ccagacagac tcgaatgggg
      781 tcgttttcga ttgcagaggg tgagggaatt gcgcgtgtgt ccgtcgattt cggctcgtca
      841 tctactggtt cctcgtcgcg cgctattgtg acttgcgacc agctcagtca cccacttttc
      901 cgccgaacga gctgtcggat tccccagcat cacctcgtgg aagcgagggc gccgaggtgt
      961 tgtttcgtga acaaagtcac gcggtggaaa ttagtttatg gacgacaaaa atacgtggat
     1021 agcgatatat atttgccctc agcaacaata aaaatgatca cgcacggatt gaaatacctc
     1081 cggcttcgcg tcaagtcatc aaggtatgta atacgtcgtc gagcgtgtcg acaaagagat
     1141 cggcgtgttc caatccgaat acaagcggag gacggatttt caggatattc gcacgttcac
     1201 cggttgtgct gcacaacacc tgccgatcgc gcaacgcgtt gacgacacgc gacgcttcat
     1261 gcgtagcggg ggatttacct gctcgatcaa gaacgagttc cacgccgata aaaaagcccg
     1321 ctccgcggac atcgccgatc acctcatgac gatccttcaa ctccagcaac ttcgagcgca
     1381 gatacgcacc gacccgctgc gcgttgtcga gcagttgctc gtcgcgcacg acatcgagta
     1441 ccgccagtcc tgcagccgcc gataccggat tgccgccaaa cgtattgaag tatcgcgatt
     1501 cacgcccgaa ccgttcgagc aattcgggct tcgcgacaat gcccgcaagc ggatgtccgt
     1561 tgcccatcgg cttgcccatt gacacgatgt ccggcgagac accgtggcgc atgaagcccc
     1621 acattgcgtc cccggtccgg cccaggccgg cctgcacttc atccgcgata aaaataccac
     1681 cctcctcgcg aatggccgcg actgcgagct tgagaaaacc agcgggatgc gtgtacacgc
     1741 cgtcgctcga caacacggtg tccacaagga gcgccgccgg gcggataccc gccgcacgca
     1801 tgtcggcggc tgcatcgcgc acggccgcgg caagcgccgc gccgatgtcg ccaggggcat
     1861 cgcgataggt atccggcgca cgcacggtcc gcacgtgcgg accgcgttga acgtactgac
     1921 ccagcgacgg cgacgcctgg gaaatcgcca ccgtgacgcc gtgataagcg aagttcgtca
     1981 cgatcaaccc cgtcccgccc gtgtagttac aagctatccg ataagcaaga tcgtttgcct
     2041 cgctgccggt gcaggtccac atcgcgtggc ccggctcgcc cggaaacgtg gcgagcacgc
     2101 gctcggtgta atcgagcacg gtttcatgca ggtatcgcgt atgcgtattg agtgtggatg
     2161 cctgccggct gatcgcctcg accacccgcg gatggcaatg gccaaccgac gccacgttgt
     2221 tataggcatc gagatagcgc ttgccgtcga cgtcatacag ccacacgcca tcgccgcgaa
     2281 cgaagtgcac gggttcgtcg tagaacagcc ggtacgcggg tccaagcaga cggcggcggc
     2341 gttcgatcat ctgagtcaag gtggacatga ggttcaacgc gtcagtgtgg cgggttgcgt
     2401 acaagcatgg cgcaacgcgg cgagcacgtc gtcgcgttgc gcgcggtcac actcggagag
     2461 gcgacgccac gacaccgcgt tgttgcgcaa aatatacttc gcgttctccg gatacagcgc
     2521 ggcccgccac ccgctgatgg tcacgatcat cacaagccgc gcgacgataa gatcgaacag
     2581 cacttctaat tcgatcgctt tcagcggcga tacttcgtga tacgcggaga cgaattcaag
     2641 cacgttggtc aacagcgcgt cgcccgtgcc caactgataa ctagccgcga ccgcgacgtc
     2701 aatgatcctc ggcgcgctga ccatgtcacc gaagtcgaga atgcctgtga tccgttcatg
     2761 attgccgggt gcgaccagca cattgtggat attcagatcg ttatgaatag cttggggagc
     2821 aagtgttccg agaattggca acgcgtgatc gcgaaagcgc tccagatgcc gctcggcaag
     2881 cgctcgttgc gcaggatcgc gcagatgcac cgtcaattca gtcaaatcct ccgcgtgctg
     2941 caaatcccaa ggcagcttca tcggttgcgc cggatagaca aagtcacgca acgccagacc
     3001 caaccgggca agcgtcgcac ccagactgcg cacttggccg gcggacactt cagcttcggg
     3061 cagcggcaaa ccgggcagat agctgaacat gcgcacgacg cgcagtgcct gcgccggttg
     3121 cgcgtgcaca tagatccggt ccccgccaag ggttggcacc acgcgctgca cgggcagctc
     3181 gggtgcaacc ttttctatgt gctcgagcgc ctgcgcctga aagtcggcga tgctgatctg
     3241 ctctgccggg tgcgagaact tgatgacgta ttcgcggccg tcgtcgcggc gaacatggaa
     3301 gttccgatcg cgctcgccag ccagcggcgt aaccgacgag gtcatcccga actgccggat
     3361 agcgatatcc cgtgcgaccg ccacatcgat ggcgggagag ggttggctca ggacgtcgtg
     3421 aatgctcatt gatgacaagg gcttctttta ggttcagtgc gagattcagt gtgaagctca
     3481 ataagcttca tgccgcagat tcaaatcctc gcaaagcact ggcgaggttg ttgcccaagg
     3541 catcggagag atatccgccc tcctgcacga tcacggtcgg caggcccagg cacgcgatct
     3601 ccgccatgat tcgatggaag ccttcagtcg tgattgcgag acccttgtac gggtccttct
     3661 cgtaggcgtc gagcccgagg gctatcacaa gcgcgccggg ctcgaacgcc cggatttgcg
     3721 caagcgtttc gcgcaacacg tcgaggtacg cgtctacacg catgccgcgc ggcaacgggc
     3781 gattgatgtt
//
LOCUS       DATGBK010000086         1862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_209323, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000086 DATGBK010000000
VERSION     DATGBK010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209323"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..452)
                     /locus_tag="VKJ77_01240"
     CDS             complement(<1..452)
                     /locus_tag="VKJ77_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43928.1"
                     /translation="MSDTATAEDAIVARVMRRLLPFLLLMYMLAFLDRANIGFAQKAL
                     QHDTGLSNAAFAFGAGVFFVGYALFEVPSNLLLHRVGAKLWMCRIMVTWGLVSAAMAF
                     AHTATMFYVLRFSLGVAEAGFFPGIVYYLTRWFPQSARARALGVFYFGA"
     gene            complement(532..1284)
                     /locus_tag="VKJ77_01245"
     CDS             complement(532..1284)
                     /locus_tag="VKJ77_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC43929.1"
                     /translation="MNQIDLAGRTVVITGGARGIGYAVAQRALASGAEVALWDIDAER
                     LERARGELAKAGKVSVAVVELTEEASVEQATQQTLQAHRKIDVLINCAGITGGNGTTW
                     ELAPDVWRRVIDVNLIGPYLTCRAVVPHVLKEGYGRIVNIASVAGKEGNPNASHYSAS
                     KAGLIGLTKSLGKELATRGILVNAVTPAAAKTEIFDSMAQQHIDYMLSKIPMNRFLLP
                     EEAASLILWLSSEDCAFSTASVFDLSGGRATY"
     gene            1687..>1862
                     /locus_tag="VKJ77_01250"
     CDS             1687..>1862
                     /locus_tag="VKJ77_01250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007742338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HMC43930.1"
                     /translation="MEPVSHGIIFWLIIGGIAGALAGRIVDGGGFGIIVDIIVGIVGA
                     FIGGWLGGVLGLHLG"
BASE COUNT          379 a          562 c          535 g          386 t
ORIGIN      
        1 gcgccgaaat agaacacgcc tagcgccctc gctcgcgccg attgaggaaa ccagcgcgtg
       61 aggtaataca caatgccggg gaaaaaacct gcctcagcca caccaagcga gaagcgcagg
      121 acatagaaca tggtggccgt atgcgcgaac gccatcgcgg cggaaacaag cccccatgtc
      181 accatgatcc ggcacatcca gagcttggct cctacgcgat gcagcagcaa gttgctcggc
      241 acttcaaaga gcgcatagcc gacgaaaaac acgcccgctc cgaacgcaaa ggccgcattc
      301 gacagacccg tatcgtgctg cagcgctttc tgcgcgaagc cgatatttgc ccgatcgaga
      361 aacgccagca tgtacatcag cagcaggaac ggcagcaggc gacgcatcac gcgggcgacg
      421 atggcgtcct ccgcggtagc ggtatcgctc atgcgtgtct ccagatattt tttcagatat
      481 ttttatgtgg cgggtgtgcc gggtgtccct atagcgacac ccgcagcggc ttcagtacgt
      541 cgcgcggcca ccggacagat cgaacaccga cgccgtgctg aacgcgcagt cttcggagct
      601 gagccacaga atgagcgacg ccgcttcttc cggcaggagg aaacggttca ttggaatctt
      661 ggagagcatg tagtcaatat gctgctgcgc catggaatcg aaaatctcgg tcttcgctgc
      721 agccggcgtc accgcgttca ccaggatgcc gcgtgtggcg agttccttac cgagcgactt
      781 cgtgagtccg atcaggccag ctttcgaggc gctatagtgc gacgcattcg gattgccttc
      841 cttgcccgcc actgaagcga tattcacgat ccgtccgtag ccttccttca gcacgtgggg
      901 cacgacggca cggcacgtga gatacgggcc gatcagattc acgtcgatga cgcggcgcca
      961 tacgtccggc gccagctccc aggtcgtacc gttgccgccg gtgatgcccg cgcagttgat
     1021 cagcacatca atctttcgat gcgcttgcag cgtctgctgc gtggcttgtt caaccgatgc
     1081 ctcttccgtc agctcgacca ccgcgacgct gaccttgccg gccttcgcga gttcgccgcg
     1141 ggcgcgctca agacgttcag cgtcgatatc ccacaatgca acttcagcgc cggaggcgag
     1201 cgcccgttgt gcgaccgcgt agccaatacc gcgtgcgcca ccggtgatta ccacggtccg
     1261 tcctgccaga tcgatctggt tcatcgtgtc tccttttgtc tttagatgat tgcgttgctt
     1321 cggcgccctg tttcgcattc cgttcggcgc ctgcttaaag ccgctgatga acgaactata
     1381 ggggcggtct catagccaaa caatccgact attcgatggt ccgatagcaa aagtgaatca
     1441 caagcttata gagggagcat tcgagttcgg gtttagccct atgacgcctg cagcgcataa
     1501 gcgccaagct tggtgaatcg gtcgttcttg ccgcattgcc ccttgcgggc acgctgcttg
     1561 ttcgaaccga gaggcttatc gattcagggg gaacatgaac atcgtctaac ccgggatgtc
     1621 cccgtaagaa ttgtcatcac catgcaggta gcttgctaca cgcatttaac ctgacggaga
     1681 aacgctatgg aacctgtctc gcacggaatc atcttctggc tgatcattgg cggaattgcc
     1741 ggcgcgctcg ccggccgaat cgttgatgga ggcggcttcg gaattattgt ggacatcatc
     1801 gtcggcattg tcggcgcgtt cattggcggg tggctcggcg gcgtgctcgg cctgcacctc
     1861 gg
//
LOCUS       DATGBK010000087         1815 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_278607, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000087 DATGBK010000000
VERSION     DATGBK010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278607"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VKJ77_01255"
     CDS             <1..180
                     /locus_tag="VKJ77_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HMC43931.1"
                     /translation="NDIAARPFGLPFPMFWQMAGIVLASIVIGLAFFLDRRAGVEDEE
                     ASFLERTSASMGDGQ"
     gene            177..1688
                     /locus_tag="VKJ77_01260"
     CDS             177..1688
                     /locus_tag="VKJ77_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter family protein"
                     /protein_id="HMC43932.1"
                     /translation="MKIAIVLCILLATVVGAVAYGRRTRRSATLAEWAVGGRSLGTLI
                     FWFMNAGEVYTTFAVLGISGYAWALGAPAYLAFCSVSMSYAVGYWLMPRIWKAGRLGK
                     LVTQADFFAARFDAPWLGVITGVIGIASLIVYVQIQLVSLGLIVQLTLDDAISSRAAT
                     IVAGLLMIAFVFVAGIRSAAFAAGVKDVLMIIVVVLLSATVASKVGAGSLLNIFGMVE
                     AKHPGIGKFPGLDASSPTTAIWLMTSAINIALGNWVFPHLFQMSYSARSATSIRRNAI
                     WQPLYSLAYFFIILLGFAALLANTHPPGDNLNAALLQFVSERYPSWVIGLVAGTGFLL
                     ALAPGALLLVAAGSIFTRNVVRPFAPRLSEGQSLGLSRASLVCFAGVAVYLSISQKGS
                     LVKILLDAYSAIGMLAPGVFLGFLWRRTSAAGVLAGMLAGFIALLAPFSAHYWGTHWP
                     QWEPGLIAMAINAGVTILVSLVTPAPAPVAVGIGLLDSAAPPATSRTGYKLGA"
BASE COUNT          267 a          569 c          562 g          417 t
ORIGIN      
        1 aacgacatcg cagcaaggcc gtttggattg cccttcccca tgttctggca gatggcgggc
       61 attgtcctgg cgagcatcgt catagggctg gcgttcttct tggatcgccg tgcgggcgta
      121 gaagacgagg aagcctcctt cctggaacga acctccgctt ccatgggaga tgggcaatga
      181 aaatcgccat cgtgttgtgc attctgctcg cgaccgtagt cggtgcagtc gcttacgggc
      241 ggcgcacccg tagaagcgcg acgctcgcgg agtgggccgt cggcggtcgc agcctgggca
      301 cgctgatctt ctggttcatg aatgccggcg aggtctacac caccttcgcc gtgctcggta
      361 tttccggcta tgcatgggcg ctcggcgcac cggcgtacct tgcgttctgt tctgtatcga
      421 tgagttacgc cgtcgggtac tggttgatgc cccggatctg gaaagccggg cggctcggca
      481 agctcgtcac gcaagccgac ttctttgcag cgcgcttcga cgcgccctgg ctcggcgtga
      541 tcactggcgt gatcgggatc gcctcgctga tcgtgtacgt ccagatccag ttggtgagcc
      601 ttggattgat cgtgcaactc acactcgatg acgccatctc aagccgcgcg gcgaccatcg
      661 tggcggggct gctcatgatt gcgttcgtgt tcgtcgcggg catccgctcg gccgcgttcg
      721 ccgccggcgt gaaggacgtg ctgatgatca tcgtggtcgt gttgttgagc gcgaccgtgg
      781 caagcaaagt cggcgcaggg tcgctactca atatcttcgg catggtcgaa gcgaagcatc
      841 cgggcatcgg caagtttccg ggactcgacg ccagttcgcc caccaccgcc atctggttga
      901 tgacgtccgc gatcaacatc gcactgggca actgggtgtt tccgcatctg ttccagatgt
      961 cgtactcggc gcgaagcgcg acctccattc gacgtaatgc catctggcaa ccgctgtatt
     1021 cgctcgcgta cttcttcatc atcctgctcg gctttgcggc gctgctcgcg aatacgcatc
     1081 cgcccggcga caacctgaat gccgcgttgc tgcagttcgt gtcggagcgt tatccatcct
     1141 gggtaatcgg cctggtggcg ggaaccggat tcctgcttgc ccttgcaccg ggtgccctgc
     1201 tgctggtcgc ggcgggctcg atcttcacgc gaaatgtcgt gcggccgttt gctccgcgcc
     1261 tgagcgaagg tcaatcgctg gggttatcgc gagcctcgct ggtgtgtttt gccggtgtgg
     1321 ccgtgtactt gtcgatctct cagaagggat cgctggtcaa aattctcctc gatgcgtact
     1381 ccgctatcgg catgctcgct cccggcgtgt ttctcggttt cctctggaga cgcacgagtg
     1441 cggcgggtgt tctggccggc atgctcgcgg gttttatcgc gttgctcgcg ccgttctccg
     1501 cgcattactg gggcacgcac tggccgcaat gggaacccgg cttgatcgcc atggcgatca
     1561 acgccggcgt gaccattctt gtcagccttg tcacgccggc acctgcgccg gtcgccgttg
     1621 gaatcggctt gctggacagc gccgcgccgc cggcaacttc ccgcaccggc tacaagctcg
     1681 gcgcgtgagg cgccatctct gacacgcgat ccctgactcg cgttcagacc ttccttcgtc
     1741 ttatccgcgt tcgctcaagc cgccatcaga gcatggtgaa cgcgtcccgc tttgcatccc
     1801 tgacacgcct tctgg
//
LOCUS       DATGBK010000088         2804 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_325078, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000088 DATGBK010000000
VERSION     DATGBK010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2804
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325078"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..798)
                     /locus_tag="VKJ77_01265"
     CDS             complement(148..798)
                     /locus_tag="VKJ77_01265"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HMC43933.1"
                     /translation="MKSFEFRRPLVVGIGGTTRAASSTERALRLALRGAEAEGARTRL
                     FGGTFLHSLPHYAPEHGERTAEQLELIEAVREADAVIIATPGYHGGVSGLVKNALDTL
                     EELRDDKRPYLDGRAVGCVVTAYGWQGGGAVLTSLRSIVHALRGWPTPYGAAVNSLET
                     RFETIDSCSDPKVAEQLATVGRQAAQFALAFNARDALGDLDLRNEGSTAIALTIAD"
     gene            1162..2196
                     /locus_tag="VKJ77_01270"
     CDS             1162..2196
                     /locus_tag="VKJ77_01270"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009889868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HMC43934.1"
                     /translation="MIEIRNLSQRFAGPRGWIEALHNVNLTIPPGEVFGIIGRSGAGK
                     STLVSTINLLTRPSEGSVIVDGRDLTTLPAAQLRTARRDIGMIFQHFNLLSSRTVFDN
                     VALPLELAGMKRSEIEATVLPLLELVGLTTQKDRYPAQISGGQKQRVGIARALASKPK
                     VLLSDEATSALDPETTRSILDLLRKINKELGLTIVLITHQMDVIKQVCDRVAVLDAGR
                     VVEEGNVVDVFMQPHHEVTRALIGDVIAHELPPALKLRVAERLKTGSGHLLRLAFTGS
                     GVDQPILSETIRRFELDFNILHGQIDEIQGQAFGSLAVLAAGKPANVAEAIVYLREQG
                     VVVEEMSHVE"
     gene            2186..>2804
                     /locus_tag="VKJ77_01275"
     CDS             2186..>2804
                     /locus_tag="VKJ77_01275"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HMC43935.1"
                     /translation="MLSEMFDMFVQSFWETLVMVGISGLVGAALGLPLGVLLYLTDRD
                     GVLRNLAVNRVMGGVVNAVRSTPFIILLVAVIPFTRLVVGSSIGTMAAVVPLTIAAAP
                     FIARLVETALREVDRGLIEAAQAMGATTSQIVFKVLLPESLPGVVAGLTITFVSLVGY
                     SAMAGAIGGGGLGDLGIRYGYQRFLPEVMLTVVVILIVFVQLVQSL"
BASE COUNT          506 a          832 c          893 g          573 t
ORIGIN      
        1 tggactcctg attaatgtct gggcttagcc ggcgctgcgg ccgggcgaac tgtgaggggc
       61 gtgttatgcc gtcagccgtt cagggtagcg tctacgccgg ccggatatgg aaaagtaaaa
      121 acaaaaaacg cccagtcggg cgttttttca atcggcgatg gtcagtgcaa tcgcggtaga
      181 cccttcattg cgcagatcga ggtcacccag tgcatcgcgc gcattgaacg ccagcgcaaa
      241 ctgagccgcc tgccgcccca ctgttgccaa ctgctccgcg accttcgggt ccgagcagga
      301 atcaatcgtc tcgaagcgtg tttccagcga gttgaccgcc gcgccgtacg gcgttggcca
      361 gccgcgcagt gcatgcacga tcgagcgcag ggacgtgagc acagcgcctc ctccttgcca
      421 gccatacgct gtcaccacgc agcctaccgc acgaccgtcg aggtacggac gcttgtcgtc
      481 gcggagctcc tccagcgtgt ccagtgcgtt cttgaccagc cccgagaccc caccgtgata
      541 gcccggcgtc gcaatgatta ccgcatccgc ttcgcgcacc gcctcgatca gttcgagctg
      601 ctctgccgtg cgttcgccgt gctcgggcgc gtagtgaggg agcgagtgca ggaacgtgcc
      661 gccgaacagg cgcgtgcgcg caccttcggc ttcggcgccg cgcagggcga ggcgaagtgc
      721 gcgttcagtc gatgaggccg cgcgggtcgt gccgccaatg ccgaccacga gcggccggcg
      781 aaattcaaag cttttcaacg aaatactccc aggagtgcag tggagccgcg cttggcgcac
      841 cggttcgtac gcgagaacgc cgcagcctat cgaagcagga ccatgcatgg atcatgccgc
      901 catcttagct atcgattctg cgcgatggaa ccgagctttg cttgaatcga tatgagcaat
      961 gcgtatttcg agcgcgatta acgcccctga aggccacgcc gcgcaagcta catacgcata
     1021 agtaattagc cttgcgcaat agattattaa agccgcggcg cgggttacgt taaactttcg
     1081 cctctcacga accagggatg aacggcggcc ggctgcccga gcgaacttgc tcaatgggaa
     1141 gtccgccgct tttttgttta catgatcgaa atacgcaatc tttcgcaacg tttcgccggc
     1201 ccacgaggct ggatcgaagc gttgcacaac gttaatttga cgattccgcc aggcgaagtg
     1261 ttcggcatca ttggccgcag cggcgccggc aaaagtacgc tggtgagcac catcaacctg
     1321 ctgacgcggc caagcgaagg cagcgtgatc gtggacggcc gcgatctcac cacgttgccc
     1381 gccgcgcaat tgcgcacggc gcgccgtgac atcggcatga tcttccagca cttcaatttg
     1441 ctgtcgtcgc gcacggtgtt cgacaacgtc gcgctgccgc tcgaactcgc cggcatgaag
     1501 cgcagcgaga tcgaggcgac cgtgttgccg ctgctggaac tcgtcgggct caccacgcaa
     1561 aaagatcgtt atcccgccca gatcagcggt ggtcagaagc agcgcgtggg gatcgcccgg
     1621 gcgcttgcca gcaagcccaa agtgctgctc tccgacgaag ccacgtccgc gctcgatcct
     1681 gaaaccacac gctcaattct tgatctgcta cgcaagatca acaaggagct cggcctgacg
     1741 atcgtgctga tcacgcatca gatggacgtg atcaagcagg tctgcgatcg cgtcgcggtg
     1801 ctcgatgcgg gtcgcgtggt agaggaaggc aatgtggtcg atgtcttcat gcagccgcac
     1861 cacgaagtca cgcgcgcgtt gattggtgac gtgatcgcgc acgagttgcc gcctgcgttg
     1921 aagctgcgcg tggccgagcg tttgaaaacc ggcagcggtc atttgctgcg gttagcgttc
     1981 accggttcgg gcgtcgacca gccgatcctc tctgaaacca tccgccgctt cgaactcgat
     2041 ttcaacatcc tgcacggtca gatagacgag atccagggcc aggcgttcgg ctcgctggcg
     2101 gtccttgcgg cagggaagcc ggcgaacgtg gccgaggcca ttgtttatct gcgtgaacaa
     2161 ggtgtggtgg tggaggagat gtcccatgtt gagtgaaatg ttcgatatgt tcgtccagtc
     2221 gttctgggaa acgctcgtga tggtgggcat ttccgggctg gtcggcgcgg ccttggggct
     2281 gccgctcggc gtgctgctgt acctcaccga ccgtgacggc gtgttgcgca atctcgcggt
     2341 gaaccgggtc atgggcggcg tcgtgaatgc ggtgcggtcc acaccgttta tcattctgct
     2401 cgtcgctgta atcccgttta cgcggctggt ggtcgggtcc tcgatcggga cgatggccgc
     2461 ggtcgtgccg ctgactatcg cggccgcgcc gttcatcgcg cggctggtcg aaaccgccct
     2521 gcgcgaggtt gatcgtggct tgattgaagc ggcgcaggca atgggcgcca ccacgagcca
     2581 gatcgtattc aaggtgttgc tgccggagtc cttgccgggt gttgttgctg gtttgacgat
     2641 tacgttcgtg tcgctggtcg ggtactcggc catggccggc gcaatcggcg gtggcggtct
     2701 gggtgacctg ggcattcgct acgggtatca gcggtttttg ccggaagtga tgctgacggt
     2761 ggtggtgatc ctgatcgtct tcgtgcagct tgtgcagtcg ctcg
//
LOCUS       DATGBK010000089         2864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_325083, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000089 DATGBK010000000
VERSION     DATGBK010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325083"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..965
                     /locus_tag="VKJ77_01280"
     CDS             <1..965
                     /locus_tag="VKJ77_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006480617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HMC43936.1"
                     /translation="LRYLMTGDVQVAALVERVRKVIGKNIPILIGGETGTGKDVLASA
                     VHRDSPRSDGPFVAVNCASIPDTLIEAELFGYEEGAFTGASKRGACGKILQADGGTLF
                     LDEIGDMPFCLQSRLLRVLQERTVTPLGSTRAVPVDFALICATNRNLRERVTAGEFRE
                     DLYYRINGLLVTLPPLRQRTDLAVTVEKILRAERATGEPIRVSPEVLAAFTRHPWPGN
                     FRQLANVLRTACAMLDDDEMSIGLDHLPQDFFDDERDAENVQAVSSPSGRDSSARLDD
                     LALSAVAAALDTHAGNVSAAARMLGVSRNTLYRKMAAIEETRRR"
     gene            1125..2270
                     /locus_tag="VKJ77_01285"
     CDS             1125..2270
                     /locus_tag="VKJ77_01285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017452780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HMC43937.1"
                     /translation="MPYVSQTRHIDRVRNVIEGRMSSPGADGTRLASSYRRSLEQYHL
                     DPGATIGPRILSVPELRDVQQREETVLRASGECLSRLHETVREADYCVMLTDAAGVTI
                     DYRVDRDRRHEFKRAGLYPGSCWSEREEGTCGVASVLLDAEAITVHKTDHFRAAFTTL
                     TCSASPIFGVQGELIGVLDASAVRSPEERESQRLVNHIVRQSALLIEDGFFLNATTHC
                     WVLLAHRSRNYVEAQPEILIAFDARGYAIAANRRAKECVPGLDQLPRHVSELFDIRAE
                     RLLDARPGRDLISFRLVGSGSPLHARVRPPILRASRSPTPTPREATKPVTQPTLSDNE
                     TLERARILAAMTDAKWRPVVAAQTLGLSRATLYRRIAKFGIVAPHRR"
     gene            2370..>2864
                     /locus_tag="VKJ77_01290"
     CDS             2370..>2864
                     /locus_tag="VKJ77_01290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HMC43938.1"
                     /translation="MSEQNPNQTITNILETFEAALKSGDTAAAVALFQPDGYWRDLVA
                     FTWNIKTMEGREQIAAMLDSQLNTVKPSKLKIADNETATEADGVTQAWITFETGVARG
                     TGFIRVKDGQIWTLLTTMTELKGHEEPKGTKRPIGAEHGARTDRTSWKENREAEQETL
                     GYEEQ"
BASE COUNT          584 a          814 c          906 g          560 t
ORIGIN      
        1 gactacggta tctgatgacc ggcgatgtcc aggttgcggc gctcgtcgaa cgggtgcgca
       61 aggtgatcgg taaaaatatt ccgatcctga ttggcggcga gacgggtacc ggtaaggatg
      121 tcctggcgag tgcggtgcat cgtgattcgc cgcgcagcga cgggccgttc gttgcggtca
      181 attgcgcgtc gatccctgac acgctgatag aagcggagtt gttcggctac gaggaagggg
      241 cgttcacggg tgcgtccaag cgcggcgctt gcggcaagat cttgcaagcg gatggcggca
      301 ccctgttcct cgatgaaatc ggcgacatgc cgttttgtct gcaaagccga ttgctgcgtg
      361 tgcttcagga gcgcaccgtg acgccgctcg gcagcacgcg cgccgtgccg gtcgatttcg
      421 ccctgatctg cgcgaccaac cgcaatttgc gcgagcgggt cactgccggt gaattccgtg
      481 aggatctcta ttaccggatc aatggtctgc tggtgacgct gccgccgttg cgccagcgca
      541 cggacctggc cgtgactgtc gaaaagatcc tgcgtgccga gcgtgcgacc ggtgaaccca
      601 tcagggtttc acctgaggtg ctggcggcgt tcacgcggca tccatggcca ggaaattttc
      661 ggcaactcgc gaacgtgctg aggaccgcat gcgccatgct cgatgacgat gaaatgtcta
      721 tcggccttga tcatctgccg caagatttct tcgatgacga acgcgatgcc gagaacgtcc
      781 aagcggtctc gtcgccgtct ggccgcgaca gcagcgctcg gctcgacgat cttgcgttgt
      841 ccgccgtcgc ggcagcgctc gatacacacg ccggcaacgt ctcggcggcg gcgcgaatgc
      901 ttggcgtgtc gcgtaacacg ctctaccgga agatggctgc gattgaggaa acgcggcgtc
      961 gataacgtcg ccgttgattg agacaaatgt ctcatcaacc tcgatggtgc actgcggtgt
     1021 gatatcccgg aacacgcatg ctaaaacgtc accatgcgtt taagttttcg ggttgcagcg
     1081 tgtcgtgaat ggcgcgagcg caccgaatcc gccggaggct tttcatgccg tatgtttcgc
     1141 agaccagaca catcgatcgc gtgcgcaacg tgatagaagg ccgcatgagc agcccgggtg
     1201 ccgatgggac gcggctggcg tcatcgtata ggcgatcgct ggagcaatat catctcgatc
     1261 cgggcgcgac gatcggcccg cgcatcctga gtgttccgga actacgcgat gtccagcagc
     1321 gcgaagaaac cgtgctgcgt gcatctggcg aatgtctttc gcgtctgcat gaaaccgtgc
     1381 gtgaagccga ttactgcgtg atgctgaccg atgcagcggg cgtgaccatc gactaccggg
     1441 tggatcgcga tcgccgccac gaattcaagc gtgcaggttt gtatcccggt tcgtgctggt
     1501 ccgagcggga agaggggaca tgcggtgttg cttcagtgct gctcgatgcc gaggcgatca
     1561 ccgtccacaa gaccgaccat ttccgcgcgg cgttcaccac gctgacatgc agcgcatcgc
     1621 ctatcttcgg cgtgcaaggc gagttgatcg gcgtgctgga tgcgtcagcg gtgcgctcgc
     1681 ccgaagagcg cgagagccag cgcctggtca accatatcgt gcggcaaagc gcgttgctga
     1741 ttgaggacgg tttctttctc aacgcgacca cgcattgctg ggtcttgctc gcgcatcgca
     1801 gccggaatta cgttgaggcg cagccggaaa tacttatcgc cttcgatgca cgcggttacg
     1861 cgatcgcggc gaatcggcgc gcgaaggaat gtgtgccggg actggatcag ttgccgcgcc
     1921 acgtttccga actcttcgat atccgcgccg aacgcctgct cgatgcacgc cctgggcgcg
     1981 atctcatctc gttcaggttg gtcggctcag ggtcgccgct gcatgcgcgc gtgaggccgc
     2041 caatcctgcg cgcttccagg agccctacgc cgacaccacg cgaagccact aaaccggtaa
     2101 cgcaacctac gttgtctgat aacgaaacac tggaacgcgc ccgcatactt gctgcgatga
     2161 ccgatgccaa atggcggccc gtcgtcgcgg cgcagacgct gggtttatcg cgggcgacgt
     2221 tgtaccggcg catagcgaag tttggaatag tggcgccgca caggcgctag cggtaaatag
     2281 agatttaaat tttagcgggc agagaacccg tcttttttca atcgatacca atcgatactt
     2341 agtgatccgt atctcatgga ggagcgacca tgtctgaaca gaatccgaac caaaccatca
     2401 ctaacatcct ggagacattc gaagccgcgc ttaaaagcgg cgacacagct gcggccgttg
     2461 cgctattcca gcctgatggt tattggcgcg accttgtagc atttacctgg aacatcaaga
     2521 cgatggaagg ccgcgagcag attgccgcga tgctggattc gcagttgaac acggtcaagc
     2581 cgtcaaagct gaagattgcc gataacgaaa cggcgaccga agcggacggc gtgacgcaag
     2641 cgtggatcac gttcgagacg ggggttgcgc gcggcacggg ttttattcgc gtgaaggacg
     2701 ggcagatatg gacgttgctc acgactatga ccgagctcaa aggccacgaa gaaccgaaag
     2761 gcaccaagcg accgatcggc gccgaacacg gcgcgcgtac ggaccgcaca agctggaaag
     2821 agaatcgcga ggctgaacag gagacgctgg gttatgagga acag
//
LOCUS       DATGBK010000090         2573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_232465, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000090 DATGBK010000000
VERSION     DATGBK010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232465"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            389..2041
                     /gene="glgA"
                     /locus_tag="VKJ77_01295"
     CDS             389..2041
                     /gene="glgA"
                     /locus_tag="VKJ77_01295"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004373 - glycogen (starch) synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HMC43939.1"
                     /translation="MSLNVLLVASEAVPLAKTGGLGDMVSAYAVALREAGVDAVILIP
                     AYPKALQMVEGLQKVASVTGLPGGDGALYRGRMPETGVPVILLRMDHLYAREGLYQDA
                     KGRDYEDNAIRFASLSAAAVKIAEGVRGFKKPDIVHAHDWHSGLTPLLMKQAGVHAKS
                     VFTIHNLAFQGNYSLSLGAALNVPAKWIVPALTEPKSIEFYGALSLMKAGIVHADHVA
                     TVSETYAREILTPRFGQLMEGVLQSCAGKLSGIINGIDVNTWDPKTDPQIARHYCFDD
                     MRGKHACKRELQQLFGLPTDPFAPVIALGSRMTSQKMAYVAVEAIPALLEQYPRLQIA
                     VLGKGEAHIEAAFQRLAQTWPDRVGVFIGYDERRAHVLHAGADILLHGSRFEPCGLTQ
                     IYAMRYGTLPVASRVGGLADTIVDAAQVTEAAELQTGFQASPLGGFEGATSSRPATGF
                     LFDGDSVQDVIAAATRAIDAFMRPQQWRTLQRNAMARDYGWNQAVAKYVQLYAGLTDA
                     RPAKAPLRTRRVPVTVRAVPVIAVAEAERREAEQAQFVARSA"
BASE COUNT          499 a          802 c          749 g          523 t
ORIGIN      
        1 ccgtcatact tgatagcaac cgggcgtaat tgccgcatca aataaattaa tagggatggc
       61 tgacaattcc tgcatcccgg cgcccgcacg caccggcaac ccagtctttc gtataacgat
      121 tcccgaacac tccgtgtaaa aacgccgcct gcagcgcgtg cgtttttaca cggctcttca
      181 tgtccgccta gcgtccaccc cggcttaccc aagcgcctat cgctttcccc cggtttcagc
      241 agaatcccaa gaacatggca cacgccttgc tcttgctttc acgcaccccc tcttccctcc
      301 gataaaagca ccggacgcat gcgccgcaga ttcttctgtc gcgagcgcat cccatcgctt
      361 ttcatccatc aaacgccagg agtcagcctt gtccttgaac gtcttgcttg tcgcttccga
      421 ggctgtaccg ctagccaaaa ctggcggact gggtgacatg gtcagcgcgt acgccgttgc
      481 gttgcgtgaa gccggagtcg atgccgtgat cctcattccg gcctatccga aagcgctgca
      541 gatggtcgag ggattacaga aggttgcttc agtgacgggg cttcccggcg gagacggcgc
      601 gctgtatcgc ggtcgcatgc ccgagaccgg cgtgcccgtg atcctgctgc gcatggatca
      661 tttatacgca cgcgaaggcc tctatcagga cgcgaaagga cgcgactacg aagacaatgc
      721 gattcgtttc gcgtcgttat cggcggcggc ggtgaagatc gccgaaggcg ttcgaggatt
      781 caagaagccg gatatcgtgc atgcgcacga ctggcattca ggactcacgc cgctcttgat
      841 gaagcaagcg ggcgtgcacg caaaaagcgt tttcacgatc cacaatctgg cgttccaggg
      901 caactattcg ctctcgcttg gtgcagcgct caacgtgcct gccaagtgga tcgtgcccgc
      961 gttgaccgaa ccaaagagca tcgaatttta tggtgcgttg agtctgatga aagccggcat
     1021 tgttcatgcc gatcacgtcg ctaccgtcag cgaaacgtat gcccgcgaaa tcctcacgcc
     1081 gcgcttcggt cagctgatgg aaggcgtgct gcaaagttgc gccggcaagc tgtcgggcat
     1141 cattaacggt atcgacgtga atacttggga cccgaagacc gatccgcaga tcgcccgcca
     1201 ttattgtttc gacgatatgc gcggcaagca cgcctgcaag cgcgagttgc agcagttgtt
     1261 cggccttccg accgacccct tcgcgccggt gatcgcgctc ggcagccgga tgacatcgca
     1321 gaaaatggcc tatgtcgccg tggaagccat tcccgcgctg ctggaacagt atccgcgttt
     1381 gcagattgcc gtgctcggca aaggcgaagc gcatatagaa gccgcgttcc agcggctggc
     1441 gcagacctgg ccggatcggg tgggtgtctt tataggttac gacgagcgcc gcgcgcacgt
     1501 gctgcatgcc ggtgctgaca tcctgctgca tggcagccgc ttcgagccgt gcggcctcac
     1561 gcaaatctac gccatgcgtt atggcacgtt gcccgtggca tctcgcgtcg gcgggctggc
     1621 ggatacgatc gtggatgcgg cgcaggtaac ggaagcggca gaacttcaaa cgggcttcca
     1681 ggcatctccc ctgggcggct tcgagggcgc aacgtcctcg cgcccggcga ccggcttcct
     1741 cttcgacggc gatagtgtcc aggacgtgat cgccgccgcc acgcgcgcca tcgacgcctt
     1801 catgcgtccg caacaatggc gcacgcttca acgcaacgcg atggcacgcg attacggatg
     1861 gaaccaggcg gtagcgaaat atgtccagct atacgcgggt ctcaccgatg cgcgtcctgc
     1921 caaagcaccg ttgcgcacac gccgcgtgcc ggtcacggtt cgggcagtgc cagtcattgc
     1981 ggtggccgag gccgaacgtc gcgaagcgga acaggcacaa ttcgtcgcac gcagcgcctg
     2041 acgtcccacg cacccctttt cgatggtacg gttacagggt tggctgttcg cagcgcattg
     2101 attgcagtgc gccgcgcacg catgtcgtct gacctgaacc cgcatgctgg tcgcgaacca
     2161 ttagctacgc tcaggctccg gcatacgcct ggaaacgcgg agaggcgcgg cacgctacgt
     2221 gctgtatccc tcaagcgacc ctggcgccgc acggaacggc gtatcgcctg atgacttgag
     2281 gtctgacgtc gatacgcgcc gcactcgtca ccccggaatt ggtgctttga agactgtctg
     2341 aggctcgtct gccgtagccg ttcttgcggt ttggtttatt gcctggttga gcgcgatcgc
     2401 gttttcccgc atccacgcca tagcaggacg aactggaaaa gacgaccgat ggaacaccat
     2461 cagatgcttc aagcgtatgc gccaagaatt tatttcatcg acccgcttct cgtcggaccg
     2521 ttgcctgact ggtccgcaca attcgagcat gccgccgcgc tgggcttcga tca
//
LOCUS       DATGBK010000091         1704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_116996, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000091 DATGBK010000000
VERSION     DATGBK010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116996"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..431)
                     /locus_tag="VKJ77_01300"
     CDS             complement(<1..431)
                     /locus_tag="VKJ77_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family peptidase"
                     /protein_id="HMC43940.1"
                     /translation="MKVHALIRVAACAVSLHAGLSFAASAASGTSDAAPAAAANAQPP
                     FSTASDQIRFGNAALFRNLIPSATLEQQSADEYVQILGEARRTKHLLGDDNPLVKRAR
                     EIANREIPFALKWNDRSKNWKWEINVVRSDEIRMYCLPGGK"
     gene            complement(428..>1704)
                     /locus_tag="VKJ77_01305"
     CDS             complement(428..>1704)
                     /locus_tag="VKJ77_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AmpG family muropeptide MFS transporter"
                     /protein_id="HMC43941.1"
                     /translation="PHEAPALTAHEDHPGWRAFLNKRMLICVFIGFTSGLPLFTLVSL
                     VQAWLRTEGVNLKEIGLFALIQFPYTWKFVWAPLMDRYVPRLPGWRPGRRRGWMLVTQ
                     LLVAVAIGALGFTSPKDQIWTVAALTALVAFFSASQDIAIDAYRRELLADTEQGLGNA
                     VFVNAYKIAALIPGSLGLILADHLPWTTVFIVTAAFMLPGMVLTLVVKEPEIHGTPPK
                     NLRDAIIQPFREFIARDGWRTALLILGFIFLYKLGDTMATTLSTSFFLDIGFNKTQIG
                     VIAKTVAFWASLAGGIVGGVWLVKIGISRGLWIFGVLQIVSTLGFAWLAKIGPSPVAL
                     AALYGFETFATGLTMAAFVAYIASTTDPRYTATQFALFTSLASVPRTLASASSGFVVA
                     QTGWFEYFMICAALSIPGMLLLPKIAPWRPVQ"
BASE COUNT          369 a          512 c          537 g          286 t
ORIGIN      
        1 atcttgccgc ccggcaggca atacatgcgg atctcgtccg aacgcaccac attgatttcc
       61 cacttccagt tcttcgagcg gtcattccac ttcagcgcga acggaatctc gcgattggca
      121 atttcgcgtg cacgcttcac gagcggattg tcgtcgccga gaagatgctt cgtgcgccgg
      181 gcttcgccga ggatttgaac gtattcgtca gcggactgct gttccaatgt cgccgatgga
      241 atcaggttgc ggaacaaagc agcattgccg aaccggattt ggtcgctggc cgtggagaaa
      301 ggcggttgtg cgttggccgc agcagccggc gctgcatcgg aagtccccga cgctgcggac
      361 gccgcaaagc tcaggccggc atgtagcgac acagcgcaag cggcgacgcg gatcagggcg
      421 tgcaccttca ttggacaggt ctccagggcg cgattttcgg caacagtaac atgcctggaa
      481 tagacagcgc agcgcagatc atgaagtact cgaaccaccc cgtttgcgcg accacgaagc
      541 cactcgatgc cgacgccaac gtccgcggca ccgacgcaag actcgtaaat agcgcaaatt
      601 gcgtggcggt ataacgagga tcggtcgtgc tcgcgatgta agccacgaac gcggccatgg
      661 tgaggccggt ggcaaaggtt tcgaacccgt agagcgcggc cagcgccaca ggcgacgggc
      721 cgattttcgc cagccacgca aaaccgagcg tggaaacgat ctgcagcacg ccgaagatcc
      781 agagcccgcg cgaaataccg atcttcacca accacacgcc gccgacgatg ccgcccgcca
      841 ggctcgccca gaacgcgacg gtctttgcga tgacgccgat ctgtgtcttg ttgaagccga
      901 tgtcgaggaa aaacgacgtg gagagcgtgg tcgccatcgt gtcgccgagc ttgtacagga
      961 agatgaaacc gaggatcagc agcgccgttc gccagccatc ccgggcgatg aattcgcgaa
     1021 acggctggat gatggcatcg cgtagattct tgggcggtgt gccatgtatt tcgggttcct
     1081 tgaccacgag cgtcaacacc atgccgggca gcatgaacgc cgccgtcacg atgaagacag
     1141 tggtccacgg caggtgatcg gcgagaatca acccgagcga gccggggatg agcgccgcga
     1201 tcttgtacgc gttgacgaag acggcgttgc cgagtccctg ctcggtatcg gcgaggagtt
     1261 cgcgacggta ggcatcgatc gctatatcct ggctcgcgct gaaaaacgcc acgagcgcgg
     1321 tcagcgcggc gacggtccag atctggtctt tcggcgatgt aaatccaagc gcaccaatcg
     1381 caacagccac gagcaactgc gtgacgagca tccagccgcg tcgccgtcct ggccgccagc
     1441 ccggcaggcg cggcacgtag cggtccatca gcggcgccca gacaaacttc caggtgtaag
     1501 ggaactggat cagcgcgaac aggccgatct ccttgaggtt cacgccttct gtgcgtaacc
     1561 acgcctggac cagggagacg agcgtgaaga gcggcagccc cgacgtgaag ccgataaaca
     1621 cgcaaatcaa catgcgcttg ttgagaaacg cgcgccagcc ggggtggtct tcgtgagcgg
     1681 taagagcggg cgcctcgtgt ggcg
//
LOCUS       DATGBK010000092         2367 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1285, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000092 DATGBK010000000
VERSION     DATGBK010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1285"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1107)
                     /locus_tag="VKJ77_01310"
     CDS             complement(<1..1107)
                     /locus_tag="VKJ77_01310"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC43942.1"
                     /translation="MLLIAWLSLLIWLVLLFGRGGFWRAQALERLSESTVHAVGQAEI
                     ARRGAWPAVVAIVPARNEADVIGRAVTSLLAQDYAGSFHLIVVDDHSTDGTADAAQAA
                     ARDGGFEDRLTVLTAAPLPPGWSGKVWAQSQGIAAIDGLGFPADYLLLTDADIRHPAD
                     AASQLVARAILEDRDLVSLMVRLRCDSTWEKALIPAFVFFFAKLYPFAWVNNVSNRTA
                     AAAGGCMMVRRAALVEAGGIESIRGELIDDCSLASRIKFRNGANAARPIRLDLAGDSE
                     SLRPYDDWSEVWNMIARTAFTQLRYSAVLLVGTLLAMCVIYLAPPVVALSLGAKGWPS
                     WLAWIAMCCAYSPMLRYYRRSILWAPLLPVIALFY"
     gene            complement(1175..2035)
                     /gene="hpnC"
                     /locus_tag="VKJ77_01315"
     CDS             complement(1175..2035)
                     /gene="hpnC"
                     /locus_tag="VKJ77_01315"
                     /EC_number="2.5.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004311 - farnesyltranstransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene synthase HpnC"
                     /protein_id="HMC43943.1"
                     /translation="MEVDHYENFPVASILLPKRLRAPVGVIYHVARTADDIADEGVFD
                     PAERHARLADFRAGLDAVAAGEPAPVHPMLFEKLAGTVAQYGLPLGPFYDLVSAFDQD
                     IDTTRYADWPALMDYCRRSANPVGRLMLHLFDASTPENLADSDAICTALQLINFWQDV
                     GIDWKKSRIYMPLCDLERFGVTERHIDKQICDDAWRALMRHEVDHARTMIVGGAPLAV
                     RMPGRFGLELCSVVHGGLRILEKIEQADYDVFRKRPVLKGPDWALIGVRSLAMRLRGR
                     VGVQLRSVES"
     gene            complement(2002..>2367)
                     /locus_tag="VKJ77_01320"
     CDS             complement(2002..>2367)
                     /locus_tag="VKJ77_01320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43944.1"
                     /translation="PSSRIKPKLARIQATPVLGQMPDKSRKRAQSGPKAGQISAPDSP
                     GFAPRSPTGFRAAHHKNLSRVEALRLTNIYVAVERMLLRVSDPARTTCVRRCPFWHPR
                     AVSNIWTALWKSITTKIFR"
BASE COUNT          492 a          759 c          733 g          383 t
ORIGIN      
        1 ataaaacagc gcgatcaccg gcaatagcgg agcccaaagt atggagcggc ggtagtagcg
       61 cagcatcggc gaatacgcgc agcacatggc gatccacgcg agccacgacg gccatccctt
      121 cgcgccaagc gacaacgcaa ccacgggcgg cgcgagatag atcacgcaca tcgcgagcag
      181 cgtcccgacc agcaacaccg ccgagtaacg caactgcgtg aacgccgtgc gcgcgatcat
      241 gttccagact tcgctccagt cgtcgtaggg acgcagcgat tcgctgtcac cggcaagatc
      301 caggcggatc ggccgcgctg cgttcgcgcc gttacgaaac ttgatgcgcg aagcgaggct
      361 gcaatcgtcg atcagctcgc cacgaatgga ttcgatcccg cccgcctcca ccagcgccgc
      421 gcgccgcacc atcatgcaac cgcccgcggc cgccgccgtg cggttactca cgttgttcac
      481 ccacgcgaac ggatacagct tcgcgaagaa gaatacgaac gcgggaatca gcgctttttc
      541 ccacgttgag tcgcagcgca gccgcaccat cagcgagacc agatcgcgat cttccaggat
      601 cgcacgcgcg acgagttgcg aggcggcatc ggcgggatgg cggatgtcgg cgtcggtgag
      661 cagcaggtaa tcggccggaa aacccagccc gtcgatagcc gcaatgcctt gcgactgcgc
      721 ccacaccttg cctgaccagc cgggcggcaa gggagcggcc gtcagcacgg tcaggcggtc
      781 ttcgaaaccg ccgtcgcgcg cggcggcctg agcggcgtcg gcggtgccgt cggtgctatg
      841 gtcgtcgaca acaatcagat ggaacgaacc cgcgtaatcc tgagcgagca gcgatgtcac
      901 cgcacggccg atcacgtcgg cttcattgcg cgccggcacg atcgcgacga ccgccggcca
      961 tgcgccgcga cgcgcaatct cggcttggcc gactgcgtga acggtacttt cgctgagccg
     1021 ttcgagggct tgcgcgcgcc agaaaccgcc gcggccaaaa agcaggacaa gccagataag
     1081 gagggacaac caggcaataa ggagcatcgt caattcggag caggtcgatg attaagcaga
     1141 ttcaacatca agaggagcgc cacgaccagg caggtcagct ttcgaccgag cgcaattgca
     1201 cacccacccg gccacgcagc cgcatcgcga gcgagcgcac gccgattaac gcccagtccg
     1261 ggcctttcag caccgggcgc ttgcggaata cgtcgtagtc ggcctgttcg attttttcga
     1321 ggattcgcaa accgccatgc acgacgctgc acagttccag cccgaagcgc ccaggcatgc
     1381 gcacggcaag cggtgcgccg ccaacgatca tcgtacgcgc gtggtcgact tcatgacgca
     1441 tcagcgcgcg ccaggcatcg tcgcagattt gcttgtcaat atgccgttcg gtcacgccga
     1501 aacgctcgag gtcgcacaac ggcatataaa tgcggctctt cttccagtcg atacccacgt
     1561 cctgccagaa gttgatgagc tgcaacgcgg tgcagatcgc gtcggaatcg gcaagattct
     1621 cgggcgtgct ggcgtcgaag agatgcagca tcagccgccc gaccgggttc gccgagcgcc
     1681 ggcaatagtc catcagcgca ggccagtcag cgtaccgcgt ggtgtcgatg tcctgatcga
     1741 acgccgagac gagatcgtaa aagggcccga gcggcagccc gtattgcgcg acggtgccgg
     1801 caagtttctc gaacagcatg ggatgaaccg gcgccggttc accggcggcg accgcatcca
     1861 gcccggcgcg gaaatcggcg aggcgggcgt ggcgttcagc cgggtcgaag acaccttcgt
     1921 cggcaatgtc gtctgcggtg cgcgcgacgt gataaatcac gccgaccggc gcacgcagcc
     1981 gtttcggcag caatatgctg gctaccggaa aattttcgta gtgatcgact tccataaggc
     2041 ggtccatata ttcgacacgg cgcgcggatg ccagaatgga catcgacgca cgcaggtcgt
     2101 gcgtgccggg tcgctgacac gtaacaacat ccgctccacg gcgacataaa tgttggttag
     2161 gcgcaacgcc tcgacacggg ataaattctt gtggtgcgcc gcccgaaagc ctgttggaga
     2221 acgcggcgcg aatccagggg aatccggtgc acttatttgg cccgcttttg gcccgctttg
     2281 agcccgcttg cgcgacttat ccggcatctg ccccaacacc ggtgtggctt gaattcgcgc
     2341 cagtttcggt ttaatcctgc tgctggg
//
LOCUS       DATGBK010000093         2779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_278704, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000093 DATGBK010000000
VERSION     DATGBK010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2779
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278704"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..781
                     /locus_tag="VKJ77_01325"
     CDS             <1..781
                     /locus_tag="VKJ77_01325"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC43945.1"
                     /translation="QKAEVAAADHEVARYRAQEEFKNIVAPFDGVVIARDTDIGNYVN
                     AAGGDVSSRGTGTADEMFSVADIHEMRLFVSVPQDYADMLKPGLEATFTLAQYPGREF
                     KATLLTTANAFNPQTRTVVTELVVQNPDHLLWPGTYATVHFVAAADHNVLVVPEQALL
                     FRDQGMQLALVDSDGRVHLQDVKLGLNLGQNVQVLSGLKPTDRFLVNPSAGTLEGEKV
                     QIVRGVPGVAPQTPARTAASEPAHPGGGQQAQVTAAESESK"
     gene            778..2295
                     /locus_tag="VKJ77_01330"
     CDS             778..2295
                     /locus_tag="VKJ77_01330"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC43946.1"
                     /translation="MMRYFKPARRLAGAMLLTLLVPLAGCDLAPPYKAPDMVLPASYK
                     GTGPFGLANPEAQLAQGDWWKMFGDEKLNGLEASLNAANPDLQAAEETYTQARDIVGV
                     ARSQLYPQLSVQTSATQNRQSENRLFRAGATGPNEEASVGYGPALSWEPDFWDEIRNR
                     TNYAKFNAQATAAMVASARLSLEIELANDYMALRALDSEHAVYAKTLGYYGDALKITQ
                     LRYSGKIAAGMDVERAQNQLSTAQAADTDIEAQRAVLEHAIAVLAGDNPSTFSLPPED
                     LAHLAIPVIPAGVPSALLQRRPDIAQSERRMAAENAAIGIARAAFYPNIKLSANAGFE
                     SDGFGGLAALSKSFWSIGASAMLPLFEGGLRRAEEEQSQSEFAQAGDNYRSTVLQAFR
                     DVEDQLVLTNKLASEYSQQQDALTSALKVQDLALSLYTNGLDNYLNVTVAQVSALSSE
                     LATVQVRSRQLQAAVGLIGAVGGGWSTADQPTPKQTIPFDPLGTHHSPGDVSEPN"
     gene            2477..2779
                     /locus_tag="VKJ77_01335"
                     /pseudo
     CDS             2477..2779
                     /locus_tag="VKJ77_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018420431.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          567 a          841 c          888 g          483 t
ORIGIN      
        1 gcagaaggcc gaggtggcag cggccgacca tgaggtcgcg cgctaccgtg cacaggaaga
       61 gttcaagaat atcgtggcac cgttcgacgg cgtcgtcatc gctcgcgata ccgacatagg
      121 caattacgtc aatgccgcgg gcggcgatgt cagttcgcga gggacgggga cggccgatga
      181 gatgttctca gtagcggata tccacgagat gcggctcttc gtttccgtgc cgcaggacta
      241 cgcggacatg ctgaagccgg gcctcgaggc gaccttcacg ctggcccagt atccgggccg
      301 tgagttcaag gcaacgctcc tgacgaccgc taacgcgttc aatccacaga cgcgaaccgt
      361 cgtcacggaa ctggtggtgc aaaacccgga tcatctgctc tggccaggca cctatgcgac
      421 tgttcacttt gtcgcggcag cggaccataa cgtgctcgtc gtacccgaac aggcgttgtt
      481 gttccgcgac cagggcatgc aactggcgct cgtcgactcc gatggcaggg tgcatctgca
      541 agacgtcaag ctcgggctga atctcggcca gaacgtgcag gtgctctcgg gcctcaaacc
      601 caccgaccgc ttcctggtca atccttccgc gggcacgctc gagggagaga aagtgcaaat
      661 cgtccgcggt gtaccgggag tcgcgccgca aacgccggcc cgaaccgcgg catctgagcc
      721 ggcgcatcca ggcgggggtc agcaagccca agtcacagct gccgaaagcg agtcgaaatg
      781 atgcgttact tcaaacctgc tcgccgcctt gccggcgcca tgctcctgac gctgctcgtg
      841 ccgcttgccg gatgcgacct tgcgccgccc tacaaggccc cggatatggt tctgcccgcc
      901 agctacaagg gaacgggacc gttcgggctc gccaatccgg aagcccagct cgcgcaaggt
      961 gactggtgga agatgttcgg cgatgaaaag ctcaatggtc tcgaagcaag cctgaatgcg
     1021 gccaaccccg atcttcaggc ggctgaagag acttataccc aggcgcgcga catcgtgggc
     1081 gtggcccgct cgcagctgta tccgcagttg agcgtccaga cttctgcaac gcagaaccgc
     1141 cagtcggaga accgattgtt ccgcgccggc gcaaccgggc cgaatgagga agcgtcggtc
     1201 ggctacgggc cggccctgtc gtgggagccg gacttctggg acgagatcag gaaccggacc
     1261 aactacgcaa agttcaacgc ccaggccacc gccgcgatgg tcgcatcggc gcggttgagt
     1321 ctcgaaatcg aactggccaa tgactacatg gcgctgcgcg cgctcgactc ggagcatgcc
     1381 gtctatgcga aaacgctcgg ctattacggt gacgcactga agatcacgca gctacgctat
     1441 tccgggaaga ttgcggcagg tatggacgtc gagcgtgcgc aaaaccagct ctccacggca
     1501 caggcggccg ataccgacat agaggcgcag cgagccgtgc tcgaacacgc catcgcagtg
     1561 ctcgccggcg acaatccgtc gaccttcagc ctgcccccag aggacctggc acacctggcg
     1621 attcccgtga ttccggccgg tgtgccgtcc gcgctgctgc aacggcgccc ggatattgcg
     1681 cagtccgagc ggcgaatggc ggcggaaaac gcagcgatcg gcatcgcgcg cgcggcgttc
     1741 tatccgaaca tcaagttgag cgctaatgcg ggattcgaga gcgacggctt cggcgggctc
     1801 gctgccctgt ccaaaagctt ctggtcgatc ggcgcatcgg ccatgctgcc actgttcgag
     1861 ggcgggctgc gccgcgccga ggaagagcaa agccagtccg agttcgcgca ggccggagat
     1921 aattaccgct cgacggtgct gcaggcgttt cgcgacgtcg aagaccaact cgtgctgacg
     1981 aacaagcttg cctcggagta cagccagcag caagatgcgc tcacgtccgc gctcaaggtg
     2041 caggacctcg cgctgagtct ttatacaaac ggtctggaca actacctaaa tgtgacggtc
     2101 gcgcaagtct ccgcactgag cagcgagctt gcgaccgttc aggtgcgaag ccgccaacta
     2161 caagcagctg tagggctgat aggtgccgtg ggcggcggct ggagcacggc ggatcagccg
     2221 accccgaaac agaccatccc gttcgacccg cttggcactc accactcgcc aggtgacgtt
     2281 agcgaaccga attaaggata cgagctgacc gtctttgcct gacaacgggt gggacggcta
     2341 cccgagcgga tgaaagtctt atggacaggc tacaaaacat gcgggtgttc gtgcgagtcg
     2401 tcgaaactgg ggcgctggtc caaataggcg catcggatcg gttaaagtgg cgatccaatc
     2461 aatctggtgg ccggtgatga gcaaggaaaa aggtctggag ggggtgttcg atggtcggca
     2521 ttttgatcgg gaaatcattg ttctctgtgt gcgctggtac cttcgctaca agctcagtct
     2581 gcgcgatctt gtcgagatga tggccgagcg gggtttgtcg ctggcgcacg ccccgacgac
     2641 cgaaggacgc ccccgtgggg aggaagtccc cgtgggatac gacgatcatg cgctgggtaa
     2701 agcgctttac gccggagttc gttaagcgct ggaaccgctt cgcaacacct gcggcacagt
     2761 cgtggcgtgt tgacgagac
//
LOCUS       DATGBK010000094         1623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_255701, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000094 DATGBK010000000
VERSION     DATGBK010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255701"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..912)
                     /locus_tag="VKJ77_01340"
     CDS             complement(<1..912)
                     /locus_tag="VKJ77_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HMC43947.1"
                     /translation="MGYTQELARRMSGFSNFAISFSIICILAGGITAFPQALSAAGGA
                     SIGIGWPVGALFALVVAASMAQIASSYPTAGGLYHWSSILGNKGWGWATAWFNLLGLI
                     FVVASVNFGVYDPFFKTLIAPLFGINPDSLTFWHQTAFIAAVTLTQAWLNHSGIRITT
                     ILTDLSGYLIFAIALLLTLALLGFSKTPFDFGRLIDFSNFTGFDGGAWPKQGMLAAFL
                     SGLLLTIYTITGFDASAHTSEETHDAARNVPRGMLRAVHWSALFGYIMVCAFLLVMPD
                     IKEGVKQGGGFFNALLSTLPAWLRVSLG"
     gene            complement(1161..>1623)
                     /locus_tag="VKJ77_01345"
     CDS             complement(1161..>1623)
                     /locus_tag="VKJ77_01345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC43948.1"
                     /translation="ISERQRSRVASFVERAASQSHIEVTAGGKPGASRGFFYEPTVIA
                     GALQTDEIVRREVFGPVVSVTRFDDTAQAIAWANDSDFGLASSVWTGDVSRAFKVAAE
                     LHYGCTWINTHFMLVSEMPHGGMKRSGYGKDMSVYALEDYTCARHVMAKFE"
BASE COUNT          360 a          503 c          489 g          271 t
ORIGIN      
        1 gcccagcgac acgcgcagcc acgccggcag cgtgctgagc agcgcattga agaacccgcc
       61 gccctgcttc acgccttcct tgatgtccgg catcacgagc aggaatgcgc agaccatgat
      121 gtagccgaac aacgccgacc agtgcaccgc ccgcagcatg cccctcggca cgttgcgcgc
      181 ggcatcgtgg gtttcctccg aggtgtgagc ggaggcatcg aaaccggtga tggtgtagat
      241 ggtcagcaaa agacccgaca ggaacgccgc cagcatgcct tgcttgggcc acgcgccgcc
      301 gtcgaaacca gtgaagttgc tgaagtcgat cagccgcccg aagtcgaacg gcgtcttcga
      361 aaacccgagc agtgccagcg tcaaaagcag tgcgatcgcg aagatcaaat agcccgagag
      421 atcggtcagg atcgtcgtga tccggatacc gctatggttg agccacgcct gagtcagcgt
      481 caccgcagcg atgaacgcgg tctggtgcca gaacgtgagc gagtcgggat tgatgccgaa
      541 cagcggcgcg atcagcgtct tgaagaacgg atcgtagacg ccgaaattca ccgatgccac
      601 cacgaagatc aacccgagca ggttgaacca tgcagtcgcc cagccccagc ccttgttgcc
      661 aagaatcgag ctccagtgat acaggccacc ggcagtcgga tatgacgacg cgatctgcgc
      721 cattgaagca gcaacgacca gcgcaaagag cgcaccgacc ggccagccaa tgccgataga
      781 cgcaccgccc gccgcgctca atgcctgcgg aaacgcggta atgccccctg ccaggataca
      841 aatgatcgag aacgatatgg caaagttcga gaagccgctc atgcggcggg caagctcctg
      901 ggtataaccc atgcttttga gttgccgggc gtcgtggtcc agcgcggcgg gtgcgtcggg
      961 cgaattgact ggttccatga ttttcctctt gctcggtttg acttcaaagg gttgaaggac
     1021 ggcgaaggga cagctagggg acaaggaggc cggctagaaa ctgggctaga aaccggagcg
     1081 gctggaacgc atgaaaacaa gcatcttccg caaaactcgc agcgatttcg cggatcactg
     1141 cgagcctttg tgtaggtgtg ttactcgaac ttcgccatca cgtggcgcgc gcaggtgtag
     1201 tcctcgagcg cgtaaaccga catgtccttg ccataacccg agcgcttcat gccgccatgg
     1261 ggcatttcgc tcacgagcat gaaatgagtg ttgatccagg tgcagccgta gtgcagctcg
     1321 gcggccacct tgaacgcgcg gctcacgtcg cccgtccaca cggaactcgc gagcccaaag
     1381 tcagagtcgt tggcccacgc gatagcctgg gccgtgtcgt cgaagcgggt caccgaaacc
     1441 accggcccga acacctcacg tcgcacgatc tcgtcggtct gcagcgcgcc cgcgatcacc
     1501 gtcggctcgt agaaaaatcc gcgcgatgcg cccggcttgc cacctgcggt gacttcaata
     1561 tgactctggc tcgcagcccg ctcaacgaag ctagccacgc ggcttctctg gcgctcggag
     1621 ata
//
LOCUS       DATGBK010000095         2532 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_117048, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000095 DATGBK010000000
VERSION     DATGBK010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117048"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..435
                     /locus_tag="VKJ77_01350"
     CDS             <1..435
                     /locus_tag="VKJ77_01350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HMC43949.1"
                     /translation="WQKMGMESNASWGKDLTGQDITYCCVSATLRDWTRLGLMMAHDG
                     MWNGQQIVPRQWLLDATTVSSPTSFLAPGRATTLLGYGYQVWILPGDHRVFALLGMDG
                     QRIVIDPRSKLVLVQTAVWTNDHDPDMLEVLALWNALVAQYG"
     gene            complement(403..567)
                     /locus_tag="VKJ77_01355"
     CDS             complement(403..567)
                     /locus_tag="VKJ77_01355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43950.1"
                     /translation="MPTSIDAMRERFLQSGDNADLPIVDAHHHFNAVALYRLCTVLRP
                     LPILRDKRVP"
     gene            complement(573..1574)
                     /locus_tag="VKJ77_01360"
     CDS             complement(573..1574)
                     /locus_tag="VKJ77_01360"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008348602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0050897 - cobalt ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HMC43951.1"
                     /translation="MTPRIAVLLGDPAGIGPELIARLLAKPENRARADLLIIGDRREL
                     ETGMEIAGQRFEYTVVDNEQAAATGTGTPALIDFCLPDDTSYERAVSTERGGRYSLEA
                     FKQALALTKANRTQGMLFAPVNKTSLHMAGMQTGDEMEWFAQQLGYTGAFCEFNVLDE
                     LWTSRVTSHIALKDVSAKLSAERIINAVRLIHDGLKRAGNPAPRIAVCGFNPHNGDNG
                     AFGREEIDVIAPAVDQARKLGFDAQGPFPADTIFVRARDQKAFDGVVTMYHDQGQIAM
                     KLMGFWRGVTVHGGLPVPIATPAHGTAFDIHGKGRADVGATQKAFDIVTQMALARMS"
     gene            complement(1591..1719)
                     /locus_tag="VKJ77_01365"
     CDS             complement(1591..1719)
                     /locus_tag="VKJ77_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43952.1"
                     /translation="MPLITGVILPRTGSFDIVLQFYSACALVYIIGSIAIDLRRTH"
     gene            complement(1730..>2532)
                     /locus_tag="VKJ77_01370"
     CDS             complement(1730..>2532)
                     /locus_tag="VKJ77_01370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003071411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HMC43953.1"
                     /translation="MGKAVNKPVFKLLGGRTKEKIWCYASKLYNNDDRDVFLAEAQGY
                     LDQGFTAMKMRFGYGPKDGPKGMAKNLEQVRLLRELAGDDIDIMVECYMGWTLEYARR
                     MLPRLAEFNPRWIEEPVIGDDVEGYQELKKMNIIPVSGGEHEFTSYGFKDLLERRAVD
                     VIQYDTNRVGGITAARKINAMAEAWSVPVIPHAGQMHNYHLTMSSTASPMSEFFPVFD
                     VEVGNELFYYIFEGEPQPENGFLQLSDETPGLGITLSDKYLDDFNIIE"
BASE COUNT          487 a          782 c          742 g          521 t
ORIGIN      
        1 tggcaaaaaa tgggcatgga gtcaaacgcg tcctggggaa aagacctgac cgggcaggac
       61 atcacctact gctgtgtcag tgcgacgctg cgtgactgga ctcgccttgg cctgatgatg
      121 gcgcacgacg gcatgtggaa cggccagcag attgtcccgc gccagtggct gctcgatgca
      181 accacggtga gctcgcccac gagcttcctc gcgcccgggc gagcgaccac gttactgggg
      241 tacgggtatc aagtgtggat cctgcccggc gatcatcgcg tgtttgcgtt gctgggcatg
      301 gatgggcaaa gaatagttat cgacccgcgc tcgaaacttg tgctggtcca gactgccgta
      361 tggaccaacg atcacgatcc ggacatgctc gaagtcttag cgttatggaa cgcgcttgtc
      421 gcgcagtatg ggtagcggtc ttaggaccgt acataacctg tacaacgcga cagcgttgaa
      481 gtgatgatgc gcatcgacga tcggcaagtc ggcgttatcg ccgctttgca ggaagcgctc
      541 gcgcatcgca tcaatggacg tgggcatctt catcagctca tgcgtgcaag cgccatctgc
      601 gtgacgatat cgaacgcctt ctgcgtcgcg cctacgtccg cgcggccctt gccgtggata
      661 tcaaacgccg tgccgtgcgc cggggtcgcg atcggcactg gaaggccgcc atgcaccgtg
      721 acgccgcgcc agaagcccat cagcttcatc gcgatctggc cttggtcgtg gtacatggtg
      781 acaacgccgt cgaacgcttt ctggtcccgc gcacgcacaa agattgtgtc ggccgggaat
      841 ggtccttgag cgtcaaaccc aagcttgcgc gcttgatcta cggccggcgc aatcacgtcg
      901 atctcctcgc ggccgaacgc accgttgtcg ccgttatgcg gattaaagcc gcacaccgca
      961 atgcgcggcg ccgggttgcc cgcacgcttg agaccgtcgt gaatcagccg caccgcgttg
     1021 atgatccgct cggccgaaag cttcgcgctc acgtccttca atgcgatgtg cgaggtcacg
     1081 cgcgaggtcc acagttcgtc gagcacgttg aactcgcaga acgcgccggt gtatccaagc
     1141 tgctgcgcga accactccat ctcgtcgccg gtctgcatgc ccgccatgtg cagcgaggtc
     1201 ttgttgaccg gcgcaaacaa catgccctgc gtgcggttcg ccttggtcaa tgccagcgcc
     1261 tgcttgaatg cttccaggct ataacggccc cctcgttcag tagagacggc acgttcgtat
     1321 gaagtgtcgt cgggcaagca aaagtcgatc aacgcgggcg tgcccgtccc cgtcgcggcg
     1381 gcttgttcat tgtccacgac agtgtattcg aagcgctgcc ccgcgatctc catgccggtc
     1441 tcaagctcac gccggtcgcc aatgatcagc aagtcggccc gcgcccggtt ctcgggtttg
     1501 gcgagcaaac gcgcgatgag ttcggggccg attccggcgg ggtcgccaag caatactgca
     1561 atacgaggtg tcatgcgttt caccgtatgt tcaatgagtg cggcgcagat cgatagcaat
     1621 cgagccgatg atataaacca gcgcacaagc gctgtaaaac tgcaggacga tgtcgaacga
     1681 acccgtccgc ggcaggatga cgccggtgat cagcggcaac ggctgccggt cactcgatga
     1741 tgttgaagtc gtcgagatac ttgtcgctca gggtaatgcc gagtcctggc gtttcgtcgg
     1801 agagttgcag gaaaccgttc tccggttgcg gctcgccttc gaagatgtaa tagaacaatt
     1861 cattgcctac ttcaacgtcg aacaccggga aaaactcgga catggggctc gccgtgctcg
     1921 acatggtcag gtgatagtta tgcatctggc ccgcgtgcgg gatcaccggc accgaccacg
     1981 cttccgccat cgcgttgatc ttgcgcgcgg ccgtaatgcc gcccacgcga ttggtatcgt
     2041 actggatcac gtccaccgcg cgacgctcca gcaggtcctt gaaaccatag ctcgtgaatt
     2101 cgtgttcacc gccggacaca ggaatgatgt tcatcttctt cagttcctga tacccctcga
     2161 cgtcgtcgcc aatcaccggc tcctcgatcc agcgcggatt gaattccgcc aggcgcggca
     2221 acatgcggcg cgcgtattcg agcgtccagc ccatgtagca ttcgaccatg atatcgatgt
     2281 cgtcaccggc cagctcgcgc agcagccgca cttgctccag gttcttcgcc atgcccttgg
     2341 gtccgtcctt cggaccgtag ccgaagcgca tcttcatcgc ggtgaaaccc tggtcgagat
     2401 aaccttgcgc ttcggccagg aacacatcgc ggtcgtcgtt gttataaagc ttcgacgcgt
     2461 agcaccagat cttttccttc gtgcgcccgc ccagcagctt gaataccggc ttgttcaccg
     2521 ccttgcccat ga
//
LOCUS       DATGBK010000096         2334 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_24444, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000096 DATGBK010000000
VERSION     DATGBK010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24444"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..752)
                     /locus_tag="VKJ77_01375"
     CDS             complement(120..752)
                     /locus_tag="VKJ77_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006396675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43954.1"
                     /translation="MSAPQPQGQLCIWTDTDPNPAQEADFNAWYDREHMQERVAIPGF
                     RYARRFKATDGGPRRYLALYVTESLDIFRSDAYQRAFTQQTPWSLGNFALMTNTQRRV
                     GDLTLETGDGEGAFLALFVLPPERVEAALLKPRFEAGLRQPGIHAARLFCTAPALSVP
                     LTASKEAALPAADALVLIEGSDAEATRALAETLADGVEVRTFQMLWRISA"
     gene            complement(854..1912)
                     /locus_tag="VKJ77_01380"
     CDS             complement(854..1912)
                     /locus_tag="VKJ77_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014898839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC43955.1"
                     /translation="MNIRFLETFVWLAKLQNFRLTAEKLHTTQAAVSSRIASLEESFN
                     VRLFDRNSRSATLTPAGRKMLAYAERIVRLGEEMRREVDDADADAGLIRIGVIESIVH
                     SWFPALMALVRERYPRLEIEVTSDTTIHLANLLRGGEIELILQTDAIAGPDFTNLPLC
                     EFPVRWVASPKLRLSGRTLDLAHLADFPIVSFSRHSGPHATLEQLFALAVERPARINC
                     ITSVAAMIRLVADGFGVAALPPAIIQRELREGTLEVLDVSAEFPSLPLVATCRAQSHP
                     LAARIADLARQAASEFEAALHAEPVPAAKTQAKRGASPKRGARKTSSAPTSSPAVNAR
                     KPSRAPKSPEIKVPESKS"
     gene            complement(2155..>2334)
                     /locus_tag="VKJ77_01385"
     CDS             complement(2155..>2334)
                     /locus_tag="VKJ77_01385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43956.1"
                     /translation="QEKLPMKMIANPSVNDLDAQSPDRLEWRCTVHDKLPIIDRFDLE
                     DFASRPCRPCFKELT"
BASE COUNT          450 a          665 c          750 g          469 t
ORIGIN      
        1 tgctcgccgt cgctagacgg ccgcgtccga cgtgcggcga gccgagatcg gattgctggg
       61 caagtgtgtt catcgaggac ctcggatgat gaaagcggga tgagcgtgac gacgtagggt
      121 caggccgaaa tgcgccagag catctggaac gtgcggactt caacaccgtc cgcgagtgtt
      181 tcggccaacg cgcgggtggc ctcggcgtcg ctgccttcga tcaacacgag cgcatcggca
      241 gcgggcaatg ccgcttcctt cgatgccgtc agcggaacgg acaacgcagg cgccgtgcaa
      301 aaaagccgtg cggcatgaat gccgggctga cgcagacctg cttcgaagcg cggcttcaac
      361 aacgctgctt caacgcgttc gggcggcagc acgaacagcg cgagaaatgc gccttcgccg
      421 tcgccggttt caagcgtcag atcgcctacg cgtcgctgcg tgttggtcat cagtgcaaag
      481 ttgccgagcg accacggcgt ttgctgagtg aatgcgcgct gataagcgtc gctgcgaaag
      541 atgtcgagcg actcagtcac atagagcgcg agataacggc gcgggccgcc gtcggtggcc
      601 ttgaagcgac gtgcgtagcg aaagccggga atggcgacgc gttcctgcat gtgctcgcgg
      661 tcgtaccacg cgttgaaatc ggcttcctgc gctggattgg ggtcggtatc cgtccagatg
      721 caaagctggc cctgcggttg tggtgcgctc atcgattgtt ccctggcgaa agtggattcg
      781 taatgggaac agtgtcgcga gcagcgggta cttcggtcca acaagaaaac aaatacggcg
      841 cgaacaagtt tccttatgac ttgctttccg gcaccttgat ttccggcgac ttaggcgcgc
      901 ggctcggctt gcgagcattg accgccggcg acgacgtcgg cgcgctgcta gtcttgcggg
      961 cgccgcgttt cggcgatgcc cctcgtttgg cctgggtctt cgcagccgga accggctcag
     1021 cgtggagcgc cgcttcgaac tcgctcgcgg cttgccgtgc cagatcggca atgcgcgcgg
     1081 cgagcgggtg actctgcgcc cggcaggtcg ccaccagcgg tagcgatgga aactcggcgc
     1141 tcacgtcgag aacctcgagc gtcccttcgc gcaactcgcg ctggatgatc gcgggcggca
     1201 gtgcagccac gccgaagccg tcggcaacca gccggatcat tgccgccacc gatgtgatgc
     1261 agttgatccg cgcgggccgc tcgactgcca gtgcgaacag ttgctcaagc gttgcatggg
     1321 ggccggaatg gcgcgaaaag ctgacgatgg gaaagtccgc gaggtgcgcg aggtcgaggg
     1381 tcctgcccga gagcctgagc ttgggactgg ccacccaacg caccgggaat tcacacaacg
     1441 gcagattcgt gaagtcgggg ccggcgattg catcggtctg caggatcaac tcgatctcac
     1501 cgccacgcag caggttcgcc aggtgaatcg tggtgtcgct ggtgacttct atttcgagcc
     1561 gtggataacg ctcgcgcacg agcgccatca gcgccgggaa ccagctatgc acgatcgatt
     1621 cgatcacccc gatgcggatc aggcctgcat cggcgtcggc gtcgtcgact tcccggcgca
     1681 tctcctcgcc aaggcgcacg atgcgctccg cataggccag catcttgcgg ccagccggcg
     1741 tgagggtcgc agagcgcgaa tttcggtcga acaggcggac gttgaagctc tcttcaagcg
     1801 acgcgatccg gcttgagacc gccgcttgcg tggtgtgcag tttctcggcc gtgaggcgga
     1861 aattctggag tttggcgagc cagacgaagg tttcgaggaa gcggatgttc acggcaaggg
     1921 tcgcaagtca tgacgaacag gcatggtaac gcgtcgtgat ggatggctcg gtctggctgg
     1981 ctaaggttgc tccaaggcgc ggacggatcg atccgctcgc ataggtgttt ttggtggata
     2041 tattttctgt ataaaaaatt gcaacgatga aacgattttc gatattaatt ctatcgttcg
     2101 tttaatccct gatgttttgc caaatgacaa tgcttgatat aacctcctac cctattaagt
     2161 cagctcttta aagcaaggac gacaaggcct gctcgcgaag tcctcaaggt cgaacctgtc
     2221 gatgatcggt agcttgtcat gcacggtaca gcgccattcc agccggtccg ggctttgcgc
     2281 atccagatca ttcacggacg ggttagcaat catcttcatt ggtaattttt cttg
//
LOCUS       DATGBK010000097         2376 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_255733, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000097 DATGBK010000000
VERSION     DATGBK010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2376
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255733"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VKJ77_01390"
     CDS             <1..240
                     /locus_tag="VKJ77_01390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43957.1"
                     /translation="TAAASLRRRQLHAAPASLLVRSNISYKTSPTFASIKHLTFVHET
                     PKSFGSMFEPPSRQFGILTFYVLAAKTPASRMPCP"
     gene            complement(305..964)
                     /locus_tag="VKJ77_01395"
     CDS             complement(305..964)
                     /locus_tag="VKJ77_01395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HMC43958.1"
                     /translation="MDTLLSFLSLILHIDKSLGFFIQHYGGWVYAVLFLIVFCETGLV
                     VLPFLPGDSLLFIGGAFAASGSMDLGALIALLLIAAILGNTVNYWIGRAIGPKVFDTH
                     IPVLERFLDREALRKTQGFYERHGGKTIVLARFVPIVRTFAPFVAGASAMKASRFQLF
                     NILGALIWVLLLVLLGYFFGNIPFIRQYLNVIALIGVCAAIVPIALGALWKVMRRKAG
                     N"
     gene            1254..>2376
                     /gene="mutL"
                     /locus_tag="VKJ77_01400"
     CDS             1254..>2376
                     /gene="mutL"
                     /locus_tag="VKJ77_01400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HMC43959.1"
                     /translation="MPDLIDSSDTISDSSAPAARPLRAIQPLPDQLISQIAAGEVVER
                     PASVVKELLENALDAGASSLRITLDEGGVKRIMIVDDGCGIPPAELSLALLRHATSKI
                     RSLAELEAVASLGFRGEALASIASVAELFITSRTAACAHATRIDAQTGAISPAAGTIG
                     TTMEVRELYFNTPARRKFLKSEQTELGHCLEVIRRVALARPDIAISVIHNGKAVEHWN
                     ASDPSTRVAKILGEVFATAHLPLDERAGPLAVYGCAGLPTASRGRADQQYFFVNGRFV
                     RDKLLTHAVRAAYEDVLHGNRYPSYVLFLDLPPESVDVNVHPSKIEVRFRDSRSIHQY
                     VFHAVQRALARNAGASPETTAGGHAAQLQPTGIASFSARP"
BASE COUNT          514 a          751 c          693 g          418 t
ORIGIN      
        1 accgccgccg ccagcctgag acggcgccag ttacacgccg ctcccgcttc acttcttgtt
       61 cgttccaaca tcagctataa gacctcgcca accttcgcca gcataaaaca tttaacgttt
      121 gttcacgaaa cgccgaaatc gttcggctcg atgttcgaac caccgagccg acaattcggc
      181 attctaacct tttacgtttt ggcggcgaag acgccagcga gccgaatgcc gtgcccgtga
      241 taaacgcgct ttcaaagcgc cgccccggcg acttcgagag cgctttcgaa ccactcaatc
      301 cgactcaatt acccgcttta cgccgcatga ctttccacaa cgccccaagc gcgatcggca
      361 cgatcgccgc gcacacgccg atcagtgcga tcacattcag atactggcga ataaacggga
      421 tattgccgaa gaaataaccg agcagcacga gcagcaatac ccagatcagt gcgccgagta
      481 tgttgaacaa ttgaaaacgc gatgccttca ttgcggatgc gcctgccacg aagggcgcaa
      541 acgtccgcac gatcggcacg aagcgcgcga gcacgatcgt tttgccgccg tgcctttcat
      601 agaaaccttg cgtcttgcga agcgcttcgc gatcgaggaa acgttcgagc acgggaatgt
      661 gggtatcgaa gaccttgggg ccgatcgcgc ggccaatcca gtaattcacc gtattcccaa
      721 ggatggccgc gatcagcagc agggcgatca gcgcgccgag atccattgac ccgctcgccg
      781 caaacgcgcc gccaatgaac agcagcgagt cgcctggcag gaacggcaac accacgagcc
      841 ccgtttcgca gaaaacgatc aggaacagca ccgcgtacac ccagccaccg taatgctgga
      901 tgaaaaaacc gagcgatttg tcgatgtgga gaataagact caggaatgac agcagcgtat
      961 ccaaaagggg gcctcgatca agatgaaatg agcgggaaac tagcaacagc agcgtgcatg
     1021 cacgggcgcg tcgttgcaaa aatgttgcga taaaaacagt cgcgccatga taccgaactc
     1081 gccgccgtaa aattcgcgaa gcgcgtgttc attggcgggt tttggcgcta attcgcccga
     1141 attacgccga gctgggacgc gaagaacggc acacggatcg gtaattcaca aacgcgtatt
     1201 ggagaccgaa cggcggtgaa atcgttcaca agcgtgaggc tttataattc ggcatgcccg
     1261 atctcatcga ctcatccgac acgatttccg attcgtccgc ccccgccgcg cgtccgctgc
     1321 gcgccattca gccgctgccc gaccagctga tcagccagat cgcggcgggc gaagtggtcg
     1381 aacggccagc gtccgtggtg aaggagttgc tcgaaaacgc gctggacgcc ggcgcatcga
     1441 gcttgcggat cacgctcgac gaaggcggcg tgaagcggat catgatcgtc gacgatggct
     1501 gtggcatccc ccccgccgag ctctctctgg cgttgttgcg ccacgccacc agcaagatcc
     1561 gctcgcttgc cgagctggaa gccgtggcgt cgctcgggtt tcgcggtgaa gcgctggcat
     1621 cgattgcgtc ggtggcggag cttttcatca ccagccggac ggccgcctgc gcgcatgcca
     1681 cgcggatcga cgcgcagacc ggcgcgatct cgccggcggc tgggactatc ggcacgacga
     1741 tggaagtgcg cgagctgtac ttcaacacgc ccgcgcgccg caaattcctg aaaagcgagc
     1801 aaaccgaact cgggcattgc ctcgaagtga tccggcgcgt ggcgctggcg cggccggaca
     1861 tcgcgatatc ggtgattcat aacggtaaag cggtcgagca ctggaatgcg tcggacccct
     1921 ccactcgcgt ggcgaaaatt ctcggcgagg tcttcgccac cgcgcatctg ccgctcgacg
     1981 aacgcgccgg gccgctggcc gtgtacggct gcgccggatt gccgaccgca agccgcggcc
     2041 gcgccgacca gcaatacttc ttcgtcaacg gccgcttcgt ccgcgacaag ctgctgacgc
     2101 acgccgtacg cgccgcgtac gaggacgtgc tgcacggcaa tcgatatccg tcgtacgtgc
     2161 tgttcctcga cttgccgccg gaatcagtcg atgtgaacgt gcatccgtcg aagattgaag
     2221 tgcgtttccg cgattcacgc tcgatccatc agtacgtgtt ccatgctgtg cagcgcgcgt
     2281 tggcgcgtaa cgcgggggca tcgccggaaa caacggctgg cggtcacgcc gcgcagctcc
     2341 agccgacggg tatcgcttcg ttcagcgccc ggccgt
//
LOCUS       DATGBK010000098         2708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_47689, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000098 DATGBK010000000
VERSION     DATGBK010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47689"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(412..891)
                     /locus_tag="VKJ77_01405"
     CDS             complement(412..891)
                     /locus_tag="VKJ77_01405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HMC43960.1"
                     /translation="MTFRLKIARIALTTAIAAAIAACTITPPPSALESKPAAAVSGAT
                     LDQYKVRVAQHIFDRNPSLVLKGTPQAMLRSLVVVAFTVDRNGRVIRSSVYRTNGDDE
                     AEATALASLRRSSPLPTPPARLLDGKGQLDLFEDWLFNDNGQFQLRSVHSAQATTID"
     gene            1006..1164
                     /locus_tag="VKJ77_01410"
     CDS             1006..1164
                     /locus_tag="VKJ77_01410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43961.1"
                     /translation="MSSDSTDLNKPKPAEHSDNEASKMPDRADDDRKQAPSDKPGKKP
                     GEGEPEVG"
     gene            1344..1610
                     /locus_tag="VKJ77_01415"
     CDS             1344..1610
                     /locus_tag="VKJ77_01415"
                     /inference="COORDINATES: protein motif:HMM:NF016268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HMC43962.1"
                     /translation="MQVSFDVNKSARNIAERSLSFERAAEFNFETALIGSDDRRFYSE
                     VRYVALGYLDERLHVLCFTETHDGIRVISFRKANSREVNRYAST"
     gene            1615..1884
                     /locus_tag="VKJ77_01420"
     CDS             1615..1884
                     /locus_tag="VKJ77_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HMC43963.1"
                     /translation="MIDESDEVRELTAADIKTFKRGGAALPASLRAKTGVRGPQKAPT
                     KIPLSLRLSPQVVEAFRASGEGWQTRIDVVLADWLKTHSPDELAV"
     gene            complement(1950..2039)
                     /locus_tag="VKJ77_01425"
     tRNA            complement(1950..2039)
                     /locus_tag="VKJ77_01425"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2003..2005),aa:Ser,seq:tga)
     gene            complement(2152..>2708)
                     /locus_tag="VKJ77_01430"
     CDS             complement(2152..>2708)
                     /locus_tag="VKJ77_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43964.1"
                     /translation="LGALSLDLFAVLLGGATALLPVFARDILHAGPWALGVLRAAPAV
                     GALAGSIYLAHFPLRQRAGTALFGGVIAFGIATIVFGLSRNLYVSLIALAALGASDVI
                     SVVVRMSLVQLQTPDDMRGRVGAINSLFIGTSNQLGEFESGMTAGLFGAVPAVLIGGV
                     GTIAVALLWMRLFPGLRATRSLEG"
BASE COUNT          594 a          763 c          850 g          501 t
ORIGIN      
        1 tgccgataaa actcgcgaag atcacgcggg aagtgctcat tttcgcgtcg cttgcgggcg
       61 atgcgggcaa cgagcccgag ggtgatgctg atgacatggc gtctccggtt cgcccttcgt
      121 gtcgcgtcca tgaatgggaa cgcgcgtcgg gacactttgt attgaatgcg cagcgcgcaa
      181 cgggcgctgg gcgctcgagg cggtgtacgg cggtgaaaac gaacggcgtt ggactgcgcg
      241 cggtgtgtcg cggagtcgac cggtaaggcg cgtcgatcaa gcgctggatg ggcgacggcg
      301 acggctttgc cggcatggcc ggcgtggggt atcgaaaatt ataacgaccg tgcgccgcgg
      361 ccggcaagga aaccgtatgg atgaatgcac caatagttcc gcttgttccg cttaatcgat
      421 ggttgtcgcc tgcgctgaat ggacgctgcg tagttggaat tggccgttat cgttgaagag
      481 ccagtcttcg aacaaatcga gctggccttt gccgtcgagc agacgtgcgg gtggcgtggg
      541 caatggcgat gagcgtcgca gcgacgcgag ggcggtggct tcggcttcat cgtcgccatt
      601 ggtccggtag accgaggacc ggatcacgcg gccattgcgg tccacggtga acgcgaccac
      661 gacgagcgag cgcagcattg cttgcggcgt gcctttgagt accagcgatg gattgcgatc
      721 gaagatatgt tgcgcgacgc gcaccttgta ctgatcgagg gtcgcgccgc ttacggcggc
      781 ggccggcttt gattcgagcg cgctgggcgg cggggtgatc gtgcaggcgg cgatggctgc
      841 cgcgattgct gtggtgagcg cgatgcgcgc gattttcaaa cggaaggtca tggcaggaga
      901 ggctccacga attcgttgca ctcatactta acaatacgcg gctggtccgg gtcttgctgc
      961 ctcattttgc atgtccactg cattttgatg cgcaaggaga gaaccatgag cagcgattct
     1021 actgatctga acaaaccgaa gcccgctgag catagcgata acgaggcaag caagatgccg
     1081 gatcgcgccg atgacgaccg taagcaggct ccaagcgata agcccggaaa gaagccagga
     1141 gagggcgagc cggaagtggg atgacgttga gtaggtgcgc tcgctacgtt aaaacccgca
     1201 tcggggacga tgcgggtttt ttatcgcgga ggccggtcaa tacccacttg ccggacgaac
     1261 tgcccgtgtg acgcgcctca ctccgatttt tgtatataca aaaagcctag cccagaacta
     1321 attttgtata tacaatttga tcgatgcaag tctccttcga tgtgaataag agcgcccgca
     1381 acatcgctga acgaagttta tcgttcgaac gggccgcaga attcaatttc gagacagcgt
     1441 tgatcggctc tgacgaccgg cgtttttaca gcgaagtacg atatgtcgcc ttggggtatc
     1501 tcgacgaacg cttgcatgtt ctctgtttca ctgaaaccca cgatggaatc cgcgtgatca
     1561 gttttcggaa ggctaattcg agagaggtga atcgctatgc cagcacgtaa gcccatgatt
     1621 gacgagagcg acgaagtacg cgaactgacg gccgcagaca tcaagacgtt caagcgcggt
     1681 ggcgctgcat tacccgcatc gttgcgggcg aagacgggcg ttcgcggtcc acaaaaagcg
     1741 ccaacgaaga ttccgctgtc gcttcgactc tcgccgcagg tcgtggaggc gtttcgcgcg
     1801 tcgggtgagg gatggcagac gcgtatcgac gtggttctgg ccgattggct caagacccac
     1861 tcgccggacg aactggcggt gtgaatcggc ttggtatgga ggctaggagt ttgacgcaga
     1921 gggttgcaga caagccgggg tgctgttttt ggcggaagcg gtgagattcg aactcacgga
     1981 cgagtcaccc cgtcgctagt tttcaagact agtgccttaa accgctcggc cacgcttcca
     2041 cgtttcacac acagcaacta cgagaaaagt gcgctcaaac cgcgtcgcac ctttctggca
     2101 aggcgcgtat tgtagcgcaa ctttcgcggg cgtcgagcaa gcaaaaccgc ctcacccttc
     2161 cagcgacctc gtcgctcgca aaccgggaaa caatcgcatc cataacaacg caacggcgat
     2221 cgtacccacg ccgccaatca gcaccgcggg cactgcgccg aacaatccgg ccgtcatccc
     2281 cgactcgaac tcgcccaact gattcgacgt cccgataaac agcgaattga tggcgcccac
     2341 gcgtccgcgc atatcgtcgg gcgtttgaag ctgaacgagc gacatgcgca cgacgacgct
     2401 gatcacatcg gaggcgccga gcgcggccag cgcgatcagc gagacataca gattccgcga
     2461 taacccgaac acgatcgtcg caatgccaaa cgcgatcacg ccgccgaaca acgccgtgcc
     2521 ggcgcgctgg cgcagcggaa aatgcgcgag ataaatcgat ccggccagcg cgccaacggc
     2581 aggcgccgcg cgcaatacgc caagcgccca cgggccggcg tgcaagatat cgcgggcgaa
     2641 aacgggtagc aacgccgtcg cgccgccaag caacaccgcg aacagatcca gcgataacgc
     2701 ccccagga
//
LOCUS       DATGBK010000099         7206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_93975, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000099 DATGBK010000000
VERSION     DATGBK010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 7206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7206
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93975"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1555)
                     /locus_tag="VKJ77_01435"
     CDS             complement(<1..1555)
                     /locus_tag="VKJ77_01435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HMC43965.1"
                     /translation="MTRVECPASEGCLNDEWLEADAFGGFASGTAGTERTRRYHALLL
                     TATQPPAGRMVLVNGVEAWLEDASGQTRIPLSMQRYGSGSVWPDPSESLLSFDTDPWP
                     TWRFQVGDNHILTAELFVAKQSAQTVLRWRLDGEAFTLKVRPLLSGRDYHALHHENPA
                     FNFSYTATGDQVRWQAYGDVPAVVAASNGSYVHAPDWYRNFCYTVERERGMDFNEDLA
                     TPGVFSFDLSLGEAVLVLSANEGAKTNAIDTAKQLADIERARRAAFLTPLHRSADAYI
                     VARNKGSTILAGFPWFTDWGRDTFIAMRGLLIASDRYSDAESILLEWAGTLSEGMLPN
                     RFPDSGAPEYNSVDASLWFVIAVHDFLATGHAQRETRDRLQQAVDGILDGYSSGTRFR
                     ISADPADGLLRAGVPGVQLTWMDAKVGDWVVTPRVGKPVEVQALWINALRIAAAWNPR
                     WTEPAARAAHFFQQRFIDPASGALYDVVDADHEPGKLDRSIRPNQLFAVGGLPFAVID
                     NGATARAVVD"
     gene            complement(1552..2028)
                     /locus_tag="VKJ77_01440"
     CDS             complement(1552..2028)
                     /locus_tag="VKJ77_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HMC43966.1"
                     /translation="MTDPNAALIQRFYEAFQRSDAEAMAACYAPDVQFSDPVFGVLRG
                     REASDMWRMLISRATEFSLTFSDIRTVGQTATANWVATYRFTQTGRKVVNRINARFAI
                     RDGLIVEHYDRFDLWTWSRQALGLKGWLLGWSSFVQNKIRAQATKGLRAYRQQPQK"
     gene            complement(2088..3368)
                     /locus_tag="VKJ77_01445"
     CDS             complement(2088..3368)
                     /locus_tag="VKJ77_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HMC43967.1"
                     /translation="MATQDKALALKKMKWFAAGLLVAAAALFLLAKSQHDAGAWAWVS
                     AFAEAAMVGALADWFAIVALFRHPLGLPIPHTAILPANKARVADNLAEFVRDKFLGTD
                     ALVARVNAFDPAGRLAVWLAEPSNAALLGAKAVAAAGQMLDFVDDERVKTMLHEALRR
                     RAEQFDLAGAVGGLLSTLTADRRHQMLLDEGLRELAQWLDREEVQAILAAKILDVAGE
                     EYPKLIGMLGFVGLSAEDLGNKFAGGLVRGANKWLHDISENPEHERRQAFDRTVEGFI
                     ERLKTDPAFRARIDQHKREWLERPELRTYVNGLWDEFKDWLRRDLAQADSTLHKKVTG
                     ASASFAAALGSDPALRESINEHMRDALKSLAPDLRDGIAKHIAATVRNWDDATLVRDV
                     ELSVGRDLQFIRVNGTLVGGAVGLIIHAVSTFMV"
     gene            complement(3453..3857)
                     /locus_tag="VKJ77_01450"
     CDS             complement(3453..3857)
                     /locus_tag="VKJ77_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HMC43968.1"
                     /translation="MTNPIADLNTLLASMSPELQPGVYVYATVPFTYDLGDIVPLATF
                     REREGLTIIVEEGEASRAGIQPLFRAAWITLTVHSDLQAVGLTAAFATALGKANVSCN
                     VVAAAYHDHIFVPVESADAAMVALQQLQRDGL"
     gene            3949..4398
                     /gene="cynS"
                     /locus_tag="VKJ77_01455"
     CDS             3949..4398
                     /gene="cynS"
                     /locus_tag="VKJ77_01455"
                     /EC_number="4.2.1.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006464967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008824 - cyanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanase"
                     /protein_id="HMC43969.1"
                     /translation="MISDRSEVTRMILAAKVSKGLKWADVAEKVGLSKEWVTAGCLGQ
                     MTFSKAQAEVVGASFDLSDEAVAWLQIVPYKGSLPTAVPTDPLIYRWYEIVSVYGSTI
                     KELIHEEFGDGIMSAIDFSMDIQREPDPKGDRVNVVLSGKFLPYKSY"
     gene            complement(4392..>7206)
                     /locus_tag="VKJ77_01460"
     CDS             complement(4392..>7206)
                     /locus_tag="VKJ77_01460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020204809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HMC43970.1"
                     /translation="VVRIVNAREHNLKSLDVDIPHGKFNVITGVSGSGKSTLAFDILF
                     HEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEV
                     WHFLRLLYVKLGIQHCIHDGAPVTAQSPESIVAQIMRDFKGQHIGLLAPLVVNRKGIY
                     TDLAKWAKTRGHTHLRVDGEFLSVDPWPKIDRFKEHTIELPVGDLTVSANDEATLKAM
                     LLETLELGKGVMHLLAPLDDLHGALNGGKKGTKHVGEIRVFSTKRACPVCGTSYPELD
                     PRMFSYNSKHGWCNTCVGTGVTLTREQREVYDDTVLSDDGRGREQTIPSAQQEPDDVG
                     DQPCPDCNGTRLNEVARAVTFGDQPITEVGRWTVSATRGWIKKLKLKGRDADIARDVV
                     SEIEGRLLFLEEVGLGYLSLDRAAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIG
                     LHPRDNKILLDALKKLGDKGNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGTVVAQGG
                     VADLAAQPDSLTGQYLANPIQHPLQARRDVKTATAKRAATPENWLTVHGATLHNLRNV
                     TASMPLGRLIAITGVSGSGKSTLARDVLMTNLLDAVGRSVLSSPATRRARKTAQADMP
                     ARNRSSVLSREAPRVKFDVAHRWQGCTEVTGFETIDRVLEVDQTPIGKTPRSCPATYI
                     GMWDTIRKLFADTLEARARGYTPSRFSFNTGDGRCPACEGQGVRTIAMSFLPDVKVPC
                     DVCHGQRFNPETLAVTWRGKNIGEVLTMEIDEAVEFFSAMTSISHPLQLMKDVGLGYL
                     TLGQPSPTLSGGEAQRIKLVTELSKVRDDIGKRGQKAPHTLYVLDEPTVGLHMADVAK
                     LIRVLHRLVDGGHSVVVIEHDLDVIAEADWVIDLGPEGGTEGGSIVAATDPDTLSKNP
                     RSHTGAALRPVLERGALQAEAVQ"
BASE COUNT         1336 a         2275 c         2211 g         1384 t
ORIGIN      
        1 gatcgacgac tgcgcgagcc gtcgcgccat tgtcgatcac cgcgaacggc agcccgccca
       61 cggcaaaaag ctggtttgga cggatggagc ggtcgagctt gcccggctcg tgatcggcat
      121 cgactacgtc gtagagcgca ccactggcgg gatcgataaa acgttgctgg aaaaagtgag
      181 cggcgcgcgc ggccggctcc gtccagcgtg ggttccatgc agccgctatg cgcagtgcgt
      241 tgatccacaa cgcctgcact tccaccggct tgccgacgcg cggcgtcacc acccagtcgc
      301 ctaccttcgc gtccatccac gtcagttgca cgccgggaac gccggcccgc agcaaaccat
      361 cggcggggtc cgcggagatc ctgaagcgcg tgccgcttga gtagccgtcg agaatgccat
      421 caacggcttg ctgcaaccgg tcccgtgttt ctcgttgtgc gtggcctgtc gcgagaaagt
      481 cgtgcacggc gatcacaaac cacaacgatg catccaccga gttgtattcc ggcgcaccac
      541 tgtccggaaa acgattcggc agcatgcctt cggagagggt accggcccat tcgagcagga
      601 tcgattcggc gtcgctgtat cggtcggatg cgatcagcag gccgcgcatt gcgatgaagg
      661 tgtcgcggcc ccagtctgta aaccatggga agccggcgag gattgtgctg cctttgtttc
      721 gcgccacgat gtaggcatcg gcggaacgat gcagcggcgt caggaaggct gcacgacgtg
      781 ctcgttcaat gtcagcaagc tgcttcgcgg tatcgatcgc gtttgtcttc gcaccctcgt
      841 tcgcgctcaa cacgagcacc gcttcgccaa gcgataaatc gaacgaaaag acgccgggcg
      901 tggcgaggtc ttcgttgaaa tccatgccgc gttcgcgctc gacggtgtag cagaagttgc
      961 gataccagtc gggcgcatga acatacgatc cattcgatgc cgcgaccacc gccggcacat
     1021 cgccgtaggc ttgccagcga acctgatcgc cagtcgccgt gtagctgaag ttgaacgccg
     1081 ggttctcgtg atgcagcgcg tgatagtcgc ggccggaaag caatggccga accttcagcg
     1141 taaaagcctc gccgtcgagc cgccagcgca gcaccgtctg cgcgctctgc ttcgcgacga
     1201 atagttcagc ggtcaggata tggttatcgc cgacctggaa gcgccacgtg ggccaagggt
     1261 cggtatcgaa ggaaagcagg ctttcggatg ggtcaggcca gaccgaaccg gaaccgtaac
     1321 gctgcatgga cagcggaatg cgcgtctgcc ccgacgcatc ttccagccag gcctccacgc
     1381 cgttcaccag caccatacgc cccgctggcg gctgcgtggc cgtgagaagc agcgcgtgat
     1441 atctgcgggt ccgttcggtg ccggccgtac cggatgcaaa gccgccaaaa gcatcggctt
     1501 cgagccattc gtcgttaaga caaccttcgc tggccggaca ttcgacgcgg gtcatttttg
     1561 gggttgctgc cggtatgccc gaagaccctt ggtcgcctga gctcgaatct tgttctgcac
     1621 gaacgacgac cagccgagca gccagccctt gagtccgagc gcctggcggc tccaggtcca
     1681 gaggtcgaag cggtcgtaat gttcgacgat cagaccatcg cggatcgcaa aacgcgcgtt
     1741 gatgcgattg accaccttgc gcccggtctg ggtgaaacga taagtcgcga cccagttcgc
     1801 cgtcgcggtc tggccgacgg tccggatgtc gctgaaggtc agcgaaaatt cggtggcgcg
     1861 ggagatcagc atgcgccaca tatccgaggc ttcgcgacct cgcaacacgc cgaataccgg
     1921 atcgctgaac tgtacgtccg gcgcgtagca cgccgccatt gcttcggcgt cggaacgctg
     1981 aaaggcttcg tagaagcgct ggatcaacgc ggcgttcgga tccgtcatat tcggtctctt
     2041 ctggaggaaa ttagctgacc gcggctacaa ggcttcgatt ccgcagctta aaccatgaac
     2101 gtggacactg cgtgaatgat caaaccaacc gcaccgccca ccagcgtgcc gttcacccgg
     2161 atgaactgca agtcgcggcc tacgctcagt tccacgtcgc gcacgagcgt ggcgtcgtcc
     2221 cagttgcgca ccgttgcggc gatatgcttg gcaatgccgt cgcgtagatc cggcgccagt
     2281 gacttgagcg cgtcgcgcat gtgctcgttg atcgactcgc gcagcgccgg atcgctcccc
     2341 agcgcggccg cgaacgacgc cgatgcgccc gtcacctttt tgtgcagcgt cgaatctgcc
     2401 tgcgcgagat cgcggcgcag ccagtccttg aattcgtccc acaacccgtt cacgtaggtt
     2461 cgcaattccg ggcgttcgag ccattcgcgc ttgtgctggt cgatacgcgc gcggaatgcc
     2521 ggatccgtct tcagacgttc gataaaccct tccaccgtcc ggtcaaaagc ctgacggcgc
     2581 tcgtgttccg ggttttcgct gatgtcgtgc agccacttgt tcgcgccgcg caccaggccg
     2641 cccgcgaact tgttaccgag atcttccgcg ctcaggccca caaacccgag catgccaatc
     2701 aatttcgggt attcctcgcc ggctacgtcc aggatctttg ccgcgaggat cgcctgcact
     2761 tcctcgcgat cgagccattg ggcgagttcg cgcaagcctt cgtcgagcag catctgatgg
     2821 cgccgatccg ccgtcagcgt ggacagcaat ccgcccaccg cgccggccag gtcgaactgt
     2881 tcggcgcggc ggcgcagcgc ttcgtggagc atcgttttga cgcgttcatc gtcgacgaaa
     2941 tcgagcatct ggcccgccgc cgcgactgct tttgcaccca gcagcgctgc gttcgacggt
     3001 tcagccagcc agaccgcgag acggccggcg ggatcgaagg cgttcacgcg ggcgaccagc
     3061 gcgtcggtgc cgaggaactt gtcgcggacg aattcggcga gattgtcagc cacccgcgcc
     3121 ttgttcgccg gcaggatggc cgtgtgcggg atcggcagcc cgagcgggtg gcgaaacagc
     3181 gcgacgatcg cgaaccagtc ggccagcgcg ccgaccatcg cggcttcggc aaaggccgag
     3241 acccacgccc aggcaccggc gtcgtgctgg ctcttggcga gcaagaatag tgcggctgcc
     3301 gcgaccagca ggccggcggc gaaccacttc atcttcttta gtgcgagtgc tttgtcctgc
     3361 gttgccatct tggtccggag gtttcttggg ggaataaggc cgccagcata ccagtgacaa
     3421 tggcggcagg tgaatggcgg cgcggtggcg gttcagagtc cgtcgcgttg aagttgctgc
     3481 agtgcaacca tcgcggcatc ggcggattcg accggcacga agatgtgatc gtggtacgcc
     3541 gcggcgacca cgttgcaact gacgtttgcc ttgccgagtg ctgtggcgaa ggctgccgtc
     3601 agaccgaccg cctggaggtc ggagtggacg gtaagtgtga tccaggcggc gcggaacaac
     3661 ggctggatac ctgctctcga tgcctcgccc tcttccacga tgatcgtcag gccttcgcgt
     3721 tcacggaacg tcgcgagcgg gacgatatct ccgaggtcat aggtaaaagg gacggttgcg
     3781 tagacgtaga cgcccggctg gagttcgggt gacatggatg caagcaacgt gttcagatcg
     3841 gcgatggggt tggtcataat ttgtctatcc tgcagttttt ttgtccgcca gccagccgcg
     3901 cgattggccg atacactcgc ttaaacgatc cctttaggag tgacacgaat gatttccgat
     3961 cgcagcgaag tgactcgcat gattctcgcc gccaaggtga gcaaagggct gaaatgggcc
     4021 gacgtagcgg agaaagtcgg cttgagcaag gagtgggtaa cggcaggctg cctcgggcag
     4081 atgacgttct ccaaagcaca ggcggaagtc gttggcgcat ccttcgacct ctccgatgaa
     4141 gccgtcgcct ggctgcagat tgtgccctat aaaggctcgc tgccgaccgc cgtcccgacc
     4201 gatcctctga tctatcgatg gtatgaaata gtgagcgttt acgggagcac gatcaaggaa
     4261 ctgatccacg aggaattcgg cgacggaatc atgagcgcca tcgatttctc gatggatatc
     4321 cagcgcgaac ccgatcccaa aggggaccgg gtcaacgtgg ttttatcggg caaattcctg
     4381 ccctacaaga gttactgaac cgcctcggct tggagcgccc cgcgctcgag caccggccgc
     4441 agcgcggcgc ccgtgtgact gcgcggattc ttcgatagtg tgtccggatc ggtcgccgcc
     4501 acgatcgatc cgccttccgt gccgccctcc ggcccgagat cgatcaccca atcggcttcg
     4561 gcgatcacat ccagatcgtg ctcgatcacc accaccgaat gcccgccatc gaccagccgg
     4621 tgcagtacgc gaatcaactt cgcgacgtcg gccatgtgca ggccgacggt gggctcatcg
     4681 agcacgtaca gcgtgtgcgg cgccttctgg ccgcgtttgc cgatatcgtc ccttaccttc
     4741 gacagctccg tcaccagctt gatccgctgc gcctcgccgc ctgacaacgt gggcgatggc
     4801 tgcccgagcg tcagataacc cagccccaca tccttcatca gttgcaatgg atgcgagatg
     4861 cttgtcatcg cggagaagaa ctcgacagcc tcgtcaatct ccatggtcag cacttcgccg
     4921 atgttcttgc cgcgccacgt caccgccagc gtttccggat tgaagcgctg accgtggcag
     4981 acgtcgcacg gcactttgac gtcgggcagg aagctcatcg cgatggtgcg caccccctgg
     5041 ccttcacagg ctgggcagcg gccgtcgccg gtgttgaacg agaagcgcga cggcgtgtaa
     5101 ccccgtgcac gggcttccag cgtgtcagcg aacagcttgc ggatggtgtc ccacatgccg
     5161 atatacgtcg ccgggcacga gcgcggcgtc ttgccgatcg gcgtctggtc gacttccagt
     5221 acacggtcga tggtctcgaa cccggtcacc tccgtgcacc cttgccagcg atgcgcaaca
     5281 tcgaacttca cacgcggcgc ctcgcgtgac aacacgctcg accggttgcg cgcgggcatg
     5341 tcggcttgcg ctgtcttacg ggcgcggcgc gtagccggcg acgacaggac cgagcggccc
     5401 acggcatcga gcagattggt catcagcacg tcacgagcga gcgttgactt gccggaaccg
     5461 ctcacgcccg ttatggcaat caagcggccg agcggcatgc tcgcagtgac gttgcgcagg
     5521 ttgtgcagcg ttgcaccgtg aaccgtgagc cagttctcgg gcgttgcggc gcgcttcgcg
     5581 gtcgcggttt ttacatcgcg acgcgcttgc aacggatgct ggatcgggtt cgccagatac
     5641 tggcccgtga gcgaatccgg ttgcgccgcg agatcggcca cgccaccttg cgccacgacc
     5701 gtaccgccgc gcttccccgc tccgggacct atatcgatga tgtgatccgc acggcgaatg
     5761 gtgtcctcgt cgtgctcaac caccaccagc gtgttgccct tgtcgccgag tttcttcagt
     5821 gcatccagca ggatcttgtt gtcacgcgga tgcagtccaa tggtcggttc atccagcaca
     5881 taacacacgc cctgcaagtt gctgccgagt tgcgcggcaa ggcgaatgcg ctgcgcttca
     5941 ccacccgaca gcgtgggcgc cgcacgatcc aggctcaggt agccaagacc gacttcttcg
     6001 aggaacagca agcggccttc gatttcactg actacgtcgc gagcgatatc ggcgtcgcgg
     6061 cccttgagct tcagcttctt gatccagccg cgcgttgcgc tgaccgtcca gcggccgact
     6121 tccgttatcg gctgatcgcc gaatgtcacc gcccgcgcga cttcgttcag gcgcgtgccg
     6181 ttgcaatccg ggcaaggctg atcgccgaca tcgtccggtt cctgttgcgc cgatggaatc
     6241 gtctgctcac ggccacggcc gtcatcggag agcacggtgt cgtcgtagac ttcgcgctgt
     6301 tcgcgggtca gcgtgacgcc ggtgcccacg caggtgttgc accagccgtg cttgctgttg
     6361 tacgagaaca tacgtggatc gagttcggga taactcgtgc cgcagaccgg acaggcgcgt
     6421 ttggtcgaga acacccggat ctcgccaacg tgcttcgtcc ctttcttgcc accgtttaac
     6481 gcgccatgca agtcatcgag cggggcaagc aaatgcatca cacccttgcc gagttcgagc
     6541 gtctccagaa gcatcgcttt gagggtggct tcatcgttcg cactgacggt cagatcgccg
     6601 accggcaact cgatggtgtg ctccttgaag cgatcgatct tcggccacgg atcgacggaa
     6661 aggaactcgc cgtccacgcg caaatgcgta tgtccgcgtg tcttcgccca cttcgcgagg
     6721 tccgtgtaaa tgcccttgcg gttcaccacg agcggtgcaa gcaagccgat atgctgacct
     6781 ttgaaatccc gcatgatctg cgcgacgatc gattccgggc tttgggccgt caccggtgcg
     6841 ccgtcatgaa tgcaatgctg gatgccgagc ttcacgtaaa gaagccgcag gaaatgccag
     6901 acttcggacg tggtcgcgac cgtgctctta cggccgccac gcgataaacg ctgttcgatg
     6961 gccaccgtcg gcggaatgcc gtagaccgca tccacttcag gacgcccggc cggttgaacg
     7021 atcgaacgcg catacgcatt caacgattcc agataacggc gctggccttc atggaaaagg
     7081 atatcgaacg ctaatgtgga cttgcccgag cccgacacac ccgtgatcac gttgaacttg
     7141 ccgtgcggga tatcgacgtc gagcgacttc aggttgtgct cgcgcgcgtt gacaatacgc
     7201 accacg
//
LOCUS       DATGBK010000100         1706 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_278782, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000100 DATGBK010000000
VERSION     DATGBK010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1706
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278782"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1053
                     /locus_tag="VKJ77_01465"
     CDS             <1..1053
                     /locus_tag="VKJ77_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HMC43971.1"
                     /translation="GQTQTLKQAFDERLGSGAKTSKPTDLRNVGPSVQYKVRGTDGQA
                     REFNNYMLPVDVQGQPMFLAGMRLSPNDPFRYLRIPADEQSSIKQWMNLRAALETPAM
                     RDEAARRFAKRSVPEANADLQKHLEESASRVLNLFAGADESGVAAVPGQPGATLGGFQ
                     AIAGFIDKSVPKGEQEKAAGLLLRMLEGATWDLWQISRAQNGMPEAQPDVKNTQFVQS
                     SINALSDSFLYGSPVFLQLDSFKQIQASVFQLTRAPGKKVVYLGSLLLVLGIFSMFYV
                     RERRLWFWLKDTSTGGTSVLMAMSTARRTIDFEKEFAQTRDAIGAMLGVKSQPVSSSP
                     ETPADSKSTGSQDSTR"
     gene            1058..>1706
                     /locus_tag="VKJ77_01470"
     CDS             1058..>1706
                     /locus_tag="VKJ77_01470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HMC43972.1"
                     /translation="MDLTQASSQSTPAQQRAGKVPVDPNLFDERPFLKRLGPTDWLFA
                     LAMVAGAGFALFRYYPFMNYYDKLVLCCAVPTFVVLGWRWKPVRLLIACIAVLSLSSL
                     QLYHSDLARADTNFFLKYFLSSQSAILWMSALLVLATVFYWIGLLSRSPTGGSIGSKM
                     TWAAVLMGFTGLMVRWYESYLIGSDVGHIPISNLYEVFVLFCLITSLFYLYYEQHY"
BASE COUNT          319 a          499 c          522 g          366 t
ORIGIN      
        1 ggtcagacgc agacgttgaa gcaggccttc gatgaacggc tggggtccgg cgcgaagacg
       61 tcgaagccga ctgatctgcg taacgtaggt ccatcggtgc aatacaaggt gcggggcacc
      121 gacggccagg cgcgtgagtt caacaactac atgctgcccg tcgatgtaca aggccagccg
      181 atgttcctcg ccggcatgcg cttgagcccc aacgatccgt tccgctattt gcgcattccc
      241 gccgacgagc aaagctccat caaacagtgg atgaacctgc gcgccgcgct ggaaacgccc
      301 gcgatgcgcg acgaggcggc gcgccgattc gcgaagcgtt cggtgcctga agcgaacgcg
      361 gacttgcaga aacatctgga ggaaagcgcg tcgcgggtgc tgaacctgtt tgccggcgcg
      421 gacgaaagtg gcgtcgcggc ggttcctggg caaccgggcg ccacgctggg tggtttccag
      481 gcaatagcag gttttatcga caaatccgtg cctaagggcg agcaggaaaa ggcggcgggt
      541 ttattgctgc gcatgcttga aggcgcgact tgggatctgt ggcagatctc gcgtgcccag
      601 aacggcatgc cggaagcgca gccggacgtg aaaaacacgc agttcgtgca atcgtcgatt
      661 aatgcacttt cggacagctt tctgtacgga tcgccggtgt ttctgcaact cgattcgttc
      721 aagcagatcc aggcttccgt gttccagctg acacgcgcac cgggcaaaaa agtggtgtat
      781 cttggcagcc tcctgctcgt gctcggcatt ttctcgatgt tttacgtgcg tgagcgtcgt
      841 ctctggttct ggctcaaaga cacgtcaacc ggcggcacga gcgtactgat ggcaatgtcc
      901 accgcgcgcc gtacgatcga tttcgagaag gagttcgcgc aaacgcgcga cgcgatcggc
      961 gccatgctgg gcgtcaagtc tcagccggta tcgtcatcac cggaaacgcc cgcggacagc
     1021 aagtccaccg gctcgcaaga ttcaactcgg taagaacatg gacctcacac aagcctcctc
     1081 gcaatcgacc ccggcgcagc agcgcgcggg caaagtgccc gtcgatccga acctcttcga
     1141 cgaacgtccg ttcctgaagc gtctcggccc gaccgactgg ctgttcgcac tggcaatggt
     1201 cgccggcgcg gggtttgcgc tattccggta ttacccgttc atgaactact acgacaagct
     1261 ggtgctttgc tgcgccgtgc cgacgttcgt ggtgctcgga tggcgctgga agccggtgcg
     1321 gctgctgatt gcgtgcattg cggtgttgtc actgtcgtcg ttgcagcttt atcactcgga
     1381 tctcgcccga gccgacacca acttcttcct caaatacttc ctgtccagcc agtcggccat
     1441 cttgtggatg agcgcactgc tcgtgctggc aacggtgttc tactggatcg gcttgctttc
     1501 gcgttcgccg actggcggct cgatcggctc gaagatgacc tgggcggccg tgctgatggg
     1561 cttcaccggc ttgatggtgc gctggtacga gtcgtacctg atcggttcgg acgtgggtca
     1621 tatccccatc tcgaacttgt atgaagtttt cgtgctgttc tgcctgatta cgtcgctgtt
     1681 ttatttgtac tacgagcagc actaca
//
LOCUS       DATGBK010000101         2489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1364, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000101 DATGBK010000000
VERSION     DATGBK010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1364"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VKJ77_01475"
     CDS             complement(<1..337)
                     /locus_tag="VKJ77_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC43973.1"
                     /translation="MTAPTPAAATADAIFFNGKIATQDDKRSFATALAVKDGKILATG
                     TDAHAMQFAHAGTQRVDLKGRTVIPGLNDSHLHVIRGGLNFNMELRWDGVPSLGDALD
                     MLRRQVARTP"
     gene            complement(468..1106)
                     /locus_tag="VKJ77_01480"
     CDS             complement(468..1106)
                     /locus_tag="VKJ77_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012733358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HMC43974.1"
                     /translation="MPHELLTPDTCALALIDYQPQMFFGTHSHDRTTIVHNVQVLAKT
                     AKLFNVPTILTTIAAQTFSGEFIPEPQAVFPEQKPIDRTSMNSWEDVNFRKAIEATGR
                     KKIVLAGLWTEVCVTFPTVQMLAAGYEIYVPTDACGDITEEAHERAVQRIIQAGAVPM
                     TSLQFMCELQRDWARGETYDGCMDIFKAHSAYGIGVRYAKQILGEHASEAGG"
     gene            complement(1278..>2489)
                     /locus_tag="VKJ77_01485"
     CDS             complement(1278..>2489)
                     /locus_tag="VKJ77_01485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43975.1"
                     /translation="TKLRLLAAYAAGLVYTEGPTAAVRDAWSEVLSLAVAASDSEFES
                     RALWGLWNAYQYGGEARAALLLARRFSALAQQFENRTQRVIGCRIEGIALHYAGEPSA
                     AREQLEGMLNAYVHRAHCWNTVGFGIDHGIVARATLARVSWVQGETQEALRLAHHALD
                     AALEYEHDMVTCYVLVEALIPIALLMGDQAVAKAGIAILRTRASHAGFAIWATCCDCY
                     EEYLQSMSGEGPCRLAQFRASLDALRKSEFLAPLTLLLAQFARASLAAGRRDDAMTSI
                     NEALRHCEETGERWYYPELRRVRGEIALAAHRTTDAESWFVSALDHARRQGAGELERR
                     AAASLGELQKWSGDASEMQLPSSLSDVPMPERCHGVAAPGYILPPLKLTPASCAERDQ
                     AAHPRTSGSIL"
BASE COUNT          470 a          759 c          766 g          494 t
ORIGIN      
        1 cgggcgtgcg cgcaacttgc cggcgcagca tgtcgagcgc atcgccaagc gacggcacgc
       61 cgtcccagcg caattccata ttgaagttca ggccgccccg gatcacgtgc agatgcgagt
      121 cgttaagccc cgggatcact gtgcgccctt tcaggtcgac acgttgagtg ccggcatgcg
      181 cgaactgcat cgcgtgagcg tcggtgccgg tggcaagaat ttttccgtcc ttgaccgcga
      241 gtgccgtggc gaaagatcgc ttgtcatcct gggtagcgat cttgccgttg aaaaaaatgg
      301 catccgcggt cgcggcggca ggggtgggcg cagtcatcgt cgtcctcatg ctttagggtg
      361 cgcaacggcg gcgaacgtgg tccgcccgaa ggtgggaatc acggttcgcg gccgcgtgtt
      421 gacgtgcttg tctacgtgct tcttcgatgt gcttcggcgg cgttctttca gccgcccgct
      481 tcgctcgcgt gctcgccgag gatctgcttc gcgtaacgca cgccgatacc gtaggcgcta
      541 tgtgccttga agatatccat gcagccgtcg tacgtctcgc cgcgagccca gtcacgttgc
      601 agctcgcaca tgaattgcag tgaggtcatg gggaccgcgc ccgcctggat gatccgctgc
      661 acggcacgct catgcgcttc ttccgtgatg tctccgcaag cgtcggtcgg gacatagatc
      721 tcgtatcccg cggccagcat ctgcacggtc ggaaacgtca cgcagacttc ggtccacaag
      781 ccggcgagca cgatcttctt gcgaccggtc gcttcaatgg ccttgcggaa gttcacgtct
      841 tcccaggagt tcatcgaggt acggtcgatc ggcttttgct cagggaacac ggcctgaggt
      901 tccgggatga attcgccgct gaaagtctgc gcggcgattg tcgtgaggat tgtgggaaca
      961 ttgaaaagct tcgcggtttt tgcgaggacc tggacgttgt gcacgatggt cgtacggtca
     1021 tgcgaatgcg ttccgaagaa catctgcggc tgatagtcga tcaacgcgag agcacaggtg
     1081 tcgggggtga gtaattcatg cggcatggaa tgctccttgg tctggcctca gactgaatcg
     1141 gcacggcgac gcttgccacc gtggaaattg tcggtaaccg ggatggcagg catgaggcga
     1201 acatgggctg catcccgatt ccagttcgag gctacagaga gggagtctta aagtcctgag
     1261 gacgacctga atccttctta aaggatcgag ccactcgtgc gtggatgcgc agcttggtcg
     1321 cgttcagcac acgatgccgg cgtaagcttc agcggcggga ggatatagcc gggtgcagca
     1381 acgccatggc agcgttccgg cataggtacg tcagataatg aagaaggcag ctgcatttcg
     1441 ctcgcatcgc ccgaccattt ttgaagctcg ccgaggcttg cagcggcacg gcgttcaagt
     1501 tcgcccgcac cttgacgccg cgcgtgatcg agtgctgata cgaaccacga ttcggcgtcc
     1561 gtcgtccggt gcgcagcaag cgcgatctcg cctcgcaccc tgcgcagttc cgggtagtac
     1621 cagcgttcgc ccgtttcctc gcaatgacga agcgcttcgt tgatcgaggt catcgcatcg
     1681 tcacgtcgcc cggcagctag cgaagcccgt gcgaactgcg caagcagtag cgtgagcggt
     1741 gcaagaaatt cgctcttgcg caatgcgtct agcgacgcgc ggaactgcgc caaccggcac
     1801 gggccttcgc cggacatcga ttgaagatat tcctcataac agtcgcagca agtcgcccag
     1861 atcgcgaacc ccgcgtgcga tgcacgggtt ctcaatatcg cgatgccagc cttggcaacg
     1921 gcttggtcac ccatcagcag tgcgatcggt atgagcgcct ccacgaggac atagcacgtc
     1981 accatgtcgt gctcgtactc aagcgcggca tcgagcgcat ggtgtgcgag cctcaacgct
     2041 tcttgcgttt caccctgaac ccatgacacc cgagcgagcg tagcgcgcgc aacaataccg
     2101 tgatcgatcc caaagccgac tgtgttccag caatgggctc gatgcacata tgcgttcaac
     2161 atcccttcga gttgctcgcg ggcagcggac ggctcgcccg catagtgcag cgcaatgcct
     2221 tcgatccggc agccaatgac acgctgggta cggttctcaa actgctgtgc aagcgcgctg
     2281 aagcggcgcg cgagcaacag cgccgcccgt gcttcgccgc cgtactggta agcgttccac
     2341 aagccccaca gggcgcggga ttcgaactcg ctgtcgcttg cagccacagc aagcgacagc
     2401 acctcggacc aggcatcgcg caccgcggcc gtcggcccct ccgtgtacac gagtcccgct
     2461 gcataggccg ccagaagccg cagcttcgt
//
LOCUS       DATGBK010000102         2867 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_232580, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000102 DATGBK010000000
VERSION     DATGBK010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2867
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232580"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /gene="dctP"
                     /locus_tag="VKJ77_01490"
     CDS             complement(<1..806)
                     /gene="dctP"
                     /locus_tag="VKJ77_01490"
                     /inference="COORDINATES: protein motif:HMM:NF037995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein DctP"
                     /protein_id="HMC43976.1"
                     /translation="MAARISRRTFITASVAALAAPALSRMARAADEPLLLRCSLDTAP
                     SHLRNVSIKDYLGKIEAASGGKIKTKLYESGQLFPDLQVGKALIQGQVEMACPGSWTI
                     TGIVPDADVFQLPVFYGRTVEEVHRVMDGKAGALLSEQIQEKLRSRVLGPWLDLGFQN
                     WYSANKPIASLADLKGMKIRNSGGAGQAWRARYLGAIPNTTAWPQVPLSLSQGVFDGF
                     VSSDESLVSAQLWDAGVKYALEDHQFVAMYVPMVSAVFWQQLTPALQKTMT"
     gene            complement(1045..1176)
                     /locus_tag="VKJ77_01495"
     CDS             complement(1045..1176)
                     /locus_tag="VKJ77_01495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43977.1"
                     /translation="MNDITLFNHPEQMPADAVSAESAIVVRSAAAGHPQKLNIGFQF"
     gene            1226..>2867
                     /locus_tag="VKJ77_01500"
     CDS             1226..>2867
                     /locus_tag="VKJ77_01500"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HMC43978.1"
                     /translation="MNHLLIVEDREADRKLLKTRLEGSDYRVTEAGDGLEALAAARRD
                     PPDAIISDVLMPKMDGFDLCRAWMQDAALRAIPFIFYSATYARVEDEHFAMRLGAVRY
                     LIKPLEAEAFLRELRAVLRQWATHAAPAPAAPLDDATFHALHKSALARKLEGKIAQLQ
                     AANSKLQESEARYRQLFEANPHPMWFFDPETLAFLAVNDAAVVHYGWSREEFLAMTLA
                     DIRPSETIPALLKYLATDNEKRIRIVDSSKHRKKDGTLIDVEISSHIVNFGGRRARIV
                     SAYDITERKQAEETLERESHRNQIFLRNASDGVHILDTDGKVLEVSDSFCQMLGYSRS
                     ELIGANASMWDAQWSPQELKQLIAEQIAKEGRSILETRHRCRNGSFRDVEITGQGLEL
                     DGKPVLFNSARDITERKLTQEKQRAAALFARRLIESSLDPLVTISPEGKITDANRMTE
                     EITGIARTELIGTDFGDCFTEPEQGRAGYLQVLARGYVRDYPLTIRHRDGHSTDVLYN
                     ATVYRDEAGEVQGVFAAARDITERQRAERLVRDSEKRFR"
BASE COUNT          560 a          875 c          897 g          535 t
ORIGIN      
        1 gtcatcgtct tctgcagcgc cggtgtgagc tgttgccaga acaccgcgct caccatcggc
       61 acgtacatgg cgacgaactg gtgatcctcg agtgcgtact tgaccccggc atcccacagc
      121 tgcgcactca ccaggctctc gtccgagctg acgaagccgt cgaacacgcc ctgcgacagg
      181 gacagcggca cctgtggcca agcggtggta ttcgggatcg cgcccagata gcgcgcgcgc
      241 cacgcttgtc ctgcgccgcc ggaattacgg atcttcatgc ccttcaggtc ggcaagcgat
      301 gcaattggtt tgttcgcgct gtaccagttc tggaagccga ggtccagcca gggaccgagc
      361 acacgcgagc gcagcttctc ctggatctgc tcgctcagga gcgccccggc cttgccgtcc
      421 atcacgcgat gcacctcctc caccgtgcgc ccgtagaaca cggggagctg gaacacgtcc
      481 gcgtccggga cgatgccggt gatggtccag cttcccggac aagccatttc gacctgtccc
      541 tggatcagcg ccttgccgac ctggaggtcg gggaagagct ggccgctttc gtacagcttg
      601 gtcttgattt tgcccccgga cgctgcctcg atcttaccca ggtaatcctt gatcgagacg
      661 ttgcgcaggt ggctcggcgc agtatccagg gaacagcgca gcagcagcgg ttcgtccgcg
      721 gcgcgggcca tgcgcgagag cgcgggtgcc gcgagagcgg cgacggatgc ggttatgaaa
      781 gttcgccggg atatgcgtgc agccatgact tcctcctaac gattaatccc tgccgttaat
      841 ttataattat gtcgaatgcg cgcaagattg caggacatcc gcaaccattg cgattcgcaa
      901 tttgctctag cttacaggca ttgtcaagca cgcggccgat cctgcgagaa ccgtcccgac
      961 gccgaacgtg cgacgatagc gttggccgat gccctgtatc ggccaagacc ggaccctcga
     1021 gcatccgtga tcgactgcct gttcctaaaa ctgaaagccg atattcagtt tttgcgggtg
     1081 accggctgca gcagaccgga ccacgatggc ggattcggcg gatactgcat cggcgggcat
     1141 ttgttctgga tggttgaata gcgtaatatc gttcacagag tatccatgga ctccgtgtga
     1201 ctgcaacggg ggcagcagga gtgttgtgaa tcacctgttg atcgtcgagg accgggaggc
     1261 ggaccgcaag ctcctcaaga cgcggcttga ggggagcgat taccgcgtga cggaggcggg
     1321 cgacgggctg gaggcgctgg ccgctgcgcg gcgcgacccg cccgatgcca tcatctccga
     1381 cgtgctgatg ccgaagatgg acggcttcga cctgtgccgc gcctggatgc aggacgcggc
     1441 gctcagggcc attcctttta ttttctactc cgcaacttat gcgcgcgtgg aggacgagca
     1501 tttcgccatg aggctgggcg cggtgcgcta tctgatcaaa cccctggagg cagaggcgtt
     1561 tctgcgggag ctgcgcgcgg tgctgcggca gtgggccacg cacgccgcgc ccgccccggc
     1621 cgcaccgctg gacgatgcca ctttccacgc tctgcacaag tcggcgctcg cgcgcaagct
     1681 tgagggcaag atcgcgcaac tgcaggcggc gaatagcaag ctgcaggaga gcgaggcgcg
     1741 ctaccggcag ctgttcgagg cgaacccgca cccgatgtgg ttttttgatc cggaaacgtt
     1801 ggccttcctt gcggtcaacg atgcggcggt ggtgcattac gggtggtcgc gcgaggagtt
     1861 cctcgcgatg accctcgccg atattcgtcc gtcagagacc atacctgccc tgctcaagta
     1921 cctcgctacg gacaacgaga aaagaatccg catcgtcgac agctcgaagc accgcaaaaa
     1981 agacggcacg ctcatcgacg tcgagatcag ctcccacatc gtcaatttcg gcgggcggcg
     2041 cgcccgcatt gtgtccgcat acgacatcac cgagcgcaag caagccgaag aaacgttgga
     2101 gcgggagagc caccgaaacc agatatttct gcgcaatgcc agtgatggcg tgcatattct
     2161 cgacaccgat gggaaggtgc tggaggtcag tgattcgttc tgccagatgc tcgggtactc
     2221 ccgttcggaa ctgattggcg ccaatgcatc gatgtgggat gcgcagtggt ccccgcagga
     2281 gttgaagcaa cttatcgcag agcagattgc gaaggaaggg cgctcgatac ttgagacccg
     2341 ccatcggtgc cggaatggaa gttttcgcga tgtcgaaata accgggcagg gtcttgagct
     2401 ggacggcaaa ccggtgttat tcaactccgc tcgcgatatc accgagcgca agcttaccca
     2461 ggaaaaacaa cgtgccgccg cgctctttgc ccgccgtctg atcgaatcga gcctcgatcc
     2521 gctggttacc atcagcccgg agggcaagat cacggacgcc aaccggatga ccgaagagat
     2581 taccgggatc gcccggacgg agcttatcgg taccgatttc ggcgattgct tcaccgaacc
     2641 cgagcagggg cgcgcgggct acctccaggt tttggcacgg ggctacgtgc gcgattaccc
     2701 gctcaccatc cgccaccgcg acggccattc taccgacgtg ctctacaacg ccaccgtcta
     2761 tcgcgacgag gccggggagg tgcagggcgt gtttgccgcg gcacgcgaca tcaccgagcg
     2821 ccagcgggcc gagcgcctgg ttcgcgatag tgaaaagcgc ttcagag
//
LOCUS       DATGBK010000103         3356 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_117118, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000103 DATGBK010000000
VERSION     DATGBK010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3356
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117118"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1419)
                     /locus_tag="VKJ77_01505"
     CDS             complement(<1..1419)
                     /locus_tag="VKJ77_01505"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HMC43979.1"
                     /translation="MKASDLFVKALENEGVDRIFAVPGEENLDVVESLRRSSIQLIVT
                     RHEQSAAFMAATHGRLTGRPGVCMATLGPGALNLVTGAAYAHLGAMPMVLITGQKPIM
                     TAHQARFQIVDIVATMKPLTKASRQIVSGTSIPTVVREAFRLAADERPGPVHLELPED
                     VAAVEVSDDVALVPLHPVELPVAQEAAIERAAALLMKAERPLVMFGAASNRPRLAGQL
                     TEFIRRTGIPFFNTQMGKGTVAAVGHDEASELWMGTAALSARDYLHEAIDRADLILAI
                     GHDTVEKPPFIMGPKGPKVVHVGYTPAHVEQVFFPHAEVVGDLGLSLARLADQVQGKL
                     PNAAALAPLREGILRRTLDRANESRFPLTPQRIVHDVREVMPADGIVALDNGMYKIWF
                     ARCYRTRSANTLLLDNALATMGAGLPSAMMAALLYPARRVMAVCGDGGFMMNSQELET
                     AVRLKLNLVVLIIQDDAYGMIRW"
     gene            complement(1658..>3356)
                     /locus_tag="VKJ77_01510"
     CDS             complement(1658..>3356)
                     /locus_tag="VKJ77_01510"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HMC43980.1"
                     /translation="RAIGGHWALLPKLARMATDNLIEAYNLPLGTMSHLYRDIAAHRP
                     GTLTQVGLGTFVDPRHGGGKINASTTEDLVSTIDIDGKTWLFYKVFPLNVTLIRGTTA
                     DPEGNVTMEREALVLDAMEAAMAAHNSNGLVIVQVERIAASGTLDPRAVVVPGIFVDR
                     VVVARPDTHAQTYGTTYNPAFSGEMKVPSGTMESPVLDERKVIARRCAFELPLGGVIN
                     LGIGVPEVVAAVAAEERLLSHLTLTAEPGLIGGTPQGGLNFGAAINIDALLHQNQQFD
                     FYDGGGLDLACLGMAEIDRSGNVNVSRFGPRLAGAGGFINISQNARSVVFAGTFTAGG
                     LDVVIEDGRLRILSEGSKKKLVESVEQITFNGSLAAERGQSVLYVTERCVFRRVPEGL
                     ELTEIAPGVDIDRDILAHMDFAPIVRNVRLMDPRIFLPQIMGLATVLLDLQMSGRLSY
                     DAGRNTMFANFEGMAIRSNNDIESVRRVLEAFCDRIGHKVSLLVNYDGFRLDESEADA
                     YFEMVRQLQLKYYSSATRFTTSAFMRMKLDAAFGNLDSASHVCETHSEAITFVESQR"
BASE COUNT          649 a         1027 c         1021 g          659 t
ORIGIN      
        1 ccatcggatc attccgtagg catcgtcctg gatgatcaat acgaccaggt tgagcttcag
       61 ccggacggcg gtctcgagtt cctgcgagtt catcatgaag ccaccatcgc cgcataccgc
      121 catcacgcgc cgggcagggt agagcagtgc cgccatcatg gccgagggca agcccgcccc
      181 catcgtcgcc aatgcgttgt cgagcagcag cgtattggcg ctgcgtgtcc gataacatcg
      241 cgcgaaccag atcttgtaca tgccgttatc gagtgcgacg atgccgtcgg ccggcatgac
      301 ttcgcgaacg tcgtggacga tgcgttgcgg cgtcagagga aagcgtgatt catttgcccg
      361 gtccagcgtg cgtctcaaga tgccttcgcg caggggcgcc agcgcagccg cgttcggaag
      421 cttgccctga acctgatcag caagccgcgc cagactcagg cccaggtcgc cgaccacttc
      481 ggcatgcggg aagaacacct gttcgacgtg cgctggcgta taacccacgt gaacgacctt
      541 gggtcccttg ggccccatga tgaacggtgg tttttcgacg gtgtcatgcc cgatcgcgag
      601 gatcaggtcc gcgcgatcga tcgcctcatg caagtagtcg cgcgcgctta gcgcggctgt
      661 tcccatccag agttcgctgg cctcgtcatg gccgacggcg gcaacggtgc ccttgcccat
      721 ctgggtgttg aagaaaggga taccagtgcg ccggatgaac tcggtcaatt gacccgcgag
      781 ccgcggccgg ttgctggcgg caccgaacat gaccaacgga cgctcggcct tcatcagcaa
      841 agccgcagcc cgttcgatgg ccgcctcttg cgccaccggg agctcgacgg gatgcaacgg
      901 aacgagcgcc acgtcgtcgc ttacctcaac ggcggccacg tcttcaggca actcgagatg
      961 gaccggcccg ggccgctcgt ccgcggcgag ccggaacgct tcgcgcacca cagtcggaat
     1021 actggtcccg ctgactattt gccgggacgc cttggtcagt ggtttcatcg tggcgacaat
     1081 gtcgactatc tgaaagcgcg cctggtgcgc cgtcatgatg ggtttctgcc cggtaatgag
     1141 taccatcggc atggcgccaa gatgcgcgta ggcggcaccg gtgaccagat tcagcgcgcc
     1201 ggggccaagc gtggccatgc agacgccggg ccttcccgtc aggcgaccgt gggtcgccgc
     1261 catgaaggcc gcagactgtt catggcgggt cacaatcagc tggatgctgg agcgccgcag
     1321 cgactcgacg acgtcgagat tttcttcgcc cggcacggcg aagatgcgat cgacaccttc
     1381 gttctccagt gccttgacga acaagtcgga agctttcata aatagtgtcc tagtttcttc
     1441 aattcgcagt cgatggtgat tggaatagcg tcaatgaata gccgggccct gcgagcgtgg
     1501 tctgaatcat caagttgtca tctgcccgga cttcgtctgt gagtgccgtt cctgcgaagc
     1561 gggtcccggg aggcagcggc ggtgtgactc atgaaagtct cgcgaatggc tgccggcgac
     1621 gcagaaggaa ctcgaaagtc gggtcataag cgacgtccta acgttggctt tccacaaaag
     1681 tgattgcctc ggaatgtgtt tcgcaaacat gtgatgcaga atcgaggttg ccaaatgcag
     1741 cgtcaagctt catgcgcatg aatgcactgg tagtgaagcg agtcgccgag ctgtagtact
     1801 tgagttgcaa ctgcctgacc atctcgaagt acgcatcggc ctccgactcg tccagccgaa
     1861 atccgtcata gttgaccagc agcgaaacct tgtggccgat gcgatcgcag aacgcctcga
     1921 gcacacgccg aacgctttcg atgtcgttgt tcgagcggat cgccatgcct tcgaaattcg
     1981 cgaacattgt gtttcgccca gcgtcgtagc tgagccggcc gctcatctgc aggtcgagta
     2041 gcaccgtcgc caggcccatg atctgcggca agaaaattcg aggatccatc aatcgcacgt
     2101 ttcgcacgat aggagcgaag tccatgtggg caagaatgtc gcgatcaata tcgacaccgg
     2161 gcgcgatttc cgtgagttcg agtccttcgg gcacgcgccg aaagacgcac cgctcggtca
     2221 catacagcac ggactgaccg cgttcggcag cgagcgatcc attgaatgtg atctgctcga
     2281 cagactcgac gagtttcttc ttcgaaccct ccgagaggat acgcagacgt ccatcctcaa
     2341 tcaccacatc gaggccgccg gccgtgaacg ttcccgcgaa aaccacgcta cgggcgttct
     2401 ggctgatgtt gataaacccg ccggcaccgg cgagtcgcgg cccgaagcgg ctgacgttga
     2461 cgtttccgct tcgatcgatc tccgccatgc cgagacacgc gaggtccagc cctccgccat
     2521 cgtagaagtc gaactgctgg ttctgatgaa gcagggcatc gatgttgatt gcggcgccga
     2581 agttcaagcc gccctggggc gtgccgccga tcaggccggg ttcggcggtc aacgtcaggt
     2641 ggctgagcag acgttcttcc gcggccacgg ctgcgacgac ttcaggaacc ccgataccca
     2701 gattgattac gccaccgagc ggcagctcga aggcacatcg acgcgcgatc acttttcgtt
     2761 cgtcgagcac cgggctttcc atcgtcccgg acgggacctt catttcgccg gagaacgcag
     2821 ggttatacgt cgtaccgtac gtttgggcgt gagtgtcagg gcgggcgact acaacgcggt
     2881 caacaaaaat tcccggcacc accactgccc gcggatcgag cgtcccgctt gcggcgatcc
     2941 gttccacctg gacgatcacc agtccgttcg aattgtgggc ggccatggcg gcctccatgg
     3001 cgtcgagcac gagcgcctcg cgttccatcg tgacgttgcc ttcggggtcg gccgtggtgc
     3061 cgcgaatcag ggtcacgttg agcggaaaga ctttgtagaa gagccaggtc ttgccgtcga
     3121 tgtcgattgt gctcaccagg tcttcggtcg tgctggcgtt gatctttccg cctccgtgac
     3181 gcggatcgac gaaggtgccc aatccgacct gcgtaagcgt gccgggccta tgcgccgcga
     3241 tgtcccgata cagatgcgac atcgtcccta atggaaggtt gtacgcctcg atcagattgt
     3301 cagtcgccat gcgagcgagc ttcggcaaca gcgcccaatg tccgccgatc gcgcgc
//
LOCUS       DATGBK010000104         2796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_47770, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000104 DATGBK010000000
VERSION     DATGBK010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47770"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..206)
                     /locus_tag="VKJ77_01515"
     CDS             complement(<1..206)
                     /locus_tag="VKJ77_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009241333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC43981.1"
                     /translation="MSTIRFLRTFLAVEKYGSFAAAAGRVALTQAAVGQQMRALEEEF
                     RRPLFSRSGRVITLTPAARVLIPQA"
     gene            336..1202
                     /locus_tag="VKJ77_01520"
     CDS             336..1202
                     /locus_tag="VKJ77_01520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006223710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC43982.1"
                     /translation="MSKETSSSPIDEPVERGQAYYGLGSTTVFASRNDPRFAYTLYVP
                     ETILESGNNVELVVVMHGTGRQFAHYRDAFAEFGRWNNCIVLCPLFPVGVLGDGNRDG
                     FKHLIEGEIRYDRVLLDMVDEIGECYGKRFDQFALFGFSGGGQFANRFAYLHPEKLWA
                     VSIGAPGSVTLLDVNRDWWVGLAGFEQQFGKAFDLDALRRVPVHMVVGKADLETWEIT
                     HRDGGRHNMPGANDAGTTRPERLRTLKATFEAAGVSVELDELDNVPHNGMMAVSAVQD
                     FLAGVLRARRSS"
     gene            1337..2731
                     /locus_tag="VKJ77_01525"
     CDS             1337..2731
                     /locus_tag="VKJ77_01525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC43983.1"
                     /translation="MNPAEHEGASTPAAPDVRQVRRALVASVIGSGFEWFDFTAYVYF
                     SKVIADVFFSVGSPVVSMSLALATFALGFLVRPLGGVLLGIYADRVGRTRALSLVMLM
                     MCAGTLILGLAPGYATLGVAAPLLVLLARLIQGLAIGGQFSLSSVVVVESAPPGKKMF
                     YGSFNMSSQALAILLASGCSYLLINNLSTNSLVSWGWRVPFLIGSLIGPLGFYIRHSI
                     AESPEFEALRKQVRTGAARAFRLGDFVREQGDAALCAMGVMIIGTASNYLWNAYLPVY
                     VEHQLHLPLKSALLGTFIGGVINFLLFPVSGKLADKFGAYRLFYPLVISWLLCTFPLF
                     WFIVSAPSLTRLLIAQIIASLFQVAIAGPHPGMLATIFPAKARSTGVALSYNLAVTLF
                     GGLAPLTVSTLTQVTGSHYVPAFYVVFAALVSLALVAFTRTGQSALASDRANRKPFSA
                     AQHGTTADLQSSDS"
BASE COUNT          486 a          802 c          859 g          649 t
ORIGIN      
        1 gcctggggga tcagcacgcg ggcggcgggg gtcaacgtga tgacgcgccc ggaccgggag
       61 aacagcggcc ttcggaactc ttcctccagc gcacgcatct gctgtccgac ggccgcctgg
      121 gtcaatgcga cgcgacccgc ggcagcagcg aaggaaccgt atttttcaac ggccaggaag
      181 gtgcgcaaaa accggatggt gctcatggca atggcattcc aacgttgcga gactaaaggt
      241 ttagtttagt ttgtgtaaat ataaatcagt tagttttttt tgaatgaccg actgcacaat
      301 tgtacggtga accattccat tacaaggctg cagacatgtc taaggaaacc tcttcctcac
      361 cgatcgatga acccgttgag cgcggacaag cgtattacgg acttggttca acaaccgtat
      421 ttgcgtcgcg caacgacccg cgtttcgctt atacgttgta tgtgcctgaa acgatcctcg
      481 agtcgggcaa taacgttgaa ctcgtcgttg tcatgcacgg aacggggcga cagttcgccc
      541 actaccgcga tgcgtttgcg gagttcgggc gctggaacaa ctgcattgtc ttatgtccgc
      601 tatttccggt cggcgtgctc ggcgacggca accgggacgg cttcaaacat ctgattgaag
      661 gcgagatccg ctatgaccgc gtgctgctcg acatggtcga tgagatcggc gagtgttatg
      721 gcaagcgttt cgatcagttc gcgttgttcg gcttctcagg cggcgggcag tttgcgaacc
      781 gttttgccta cctgcatccg gaaaaattat gggcggtgtc gatcggtgca ccgggctcgg
      841 tgaccctgct cgatgtcaac cgcgactggt gggtcggctt ggcgggtttc gagcagcagt
      901 tcggcaaggc gttcgacctc gacgcgttgc gtcgcgtgcc cgttcatatg gtggtcggca
      961 aggcggatct ggaaacgtgg gagatcacgc atcgggacgg cggccgtcat aacatgccgg
     1021 gcgcaaacga cgccggcacg acccgtccag agcgcctcag gacgctcaag gcgacgttcg
     1081 aagcagcggg ggttagtgtt gaactggatg aactggataa cgttccacac aacggcatga
     1141 tggccgtgag cgcggttcag gactttctcg caggcgtgct gcgcgcgcgc cggtccagct
     1201 agttcaacaa catcaaaatc aagctcgcga atctgcgagg ctctctcgcc cgggcgcatt
     1261 cgcgtcccgg gccggcggtg catatcgcgc gttatttgcc tgccctttag cggcgacgcg
     1321 caggaggaga tgacgtatga atccggcaga acacgaaggc gcatcaacgc ccgctgcacc
     1381 tgacgtgcgg caagtccgcc gcgcactggt cgcatcggtg atcggcagtg gcttcgagtg
     1441 gttcgacttc acggcgtacg tctacttctc gaaggtcatc gcagacgtgt tcttctcggt
     1501 gggaagcccc gtcgtgtcga tgtcgcttgc gcttgcgaca tttgcccttg gattcctcgt
     1561 gcggccgctt ggcggggtcc tgctgggcat ctatgcggat cgcgtggggc gtactcgcgc
     1621 tctttcgctg gttatgctga tgatgtgcgc cggcacgctg atactgggtc tggcgccggg
     1681 ttatgcgaca ttgggcgtcg cggctccgct gctcgtattg ctggcacggc tgatccaggg
     1741 gctggcgatt ggcgggcagt tcagtctctc gtcggtggtc gtggtggaga gcgcaccgcc
     1801 gggcaagaaa atgttctacg gcagtttcaa tatgtcgtcg caggcgctcg ccatactgct
     1861 ggcttctgga tgcagctatc tgctcatcaa taatctctct acgaattcgc tcgtgagttg
     1921 gggctggcgc gtgccgttcc tgatcgggtc gctcatcggc ccgctaggct tttacatccg
     1981 ccatagcatt gccgagtcgc cggagttcga ggcgctgcgc aagcaggttc gcacgggtgc
     2041 cgcccgcgct ttccggctgg gcgactttgt gcgtgaacag ggcgatgcgg ctttatgtgc
     2101 gatgggcgtg atgatcattg gcacggcgtc caattatctg tggaacgcgt atttgcccgt
     2161 gtatgtggaa caccagctgc atctcccgct taagtccgct ttgcttggaa cgttcattgg
     2221 cggggtcatc aatttcctgc tgtttccggt ctcgggcaaa ctcgccgata aattcggtgc
     2281 ctaccggctt ttctatccac tggtgatcag ttggttgctg tgcacgttcc cattgttctg
     2341 gttcattgtg tctgcgccat cgctcacgcg cctcttgatc gcgcaaatta ttgcgtccct
     2401 cttccaggtt gcgatagcag gtccgcaccc cggcatgctg gcgaccatct tcccggcgaa
     2461 ggcgcgttcg accggcgtgg cgctgtcgta taacctcgcg gtaactttgt tcggcggcct
     2521 tgcgccgctg accgtctcga ccctgaccca agtcacgggc agccactacg ttcccgcttt
     2581 ttatgtcgtc tttgcagcgc tggtttcact cgcgctcgtc gcgttcacac gcactggaca
     2641 gtcggctttg gctagcgacc gtgctaacag gaagccattt tctgcggcgc agcacggaac
     2701 cacggcggac cttcaatctt ccgatagctg accgtcaagt cccccaagcg cacgcgcgac
     2761 gccaattcgc tacacttgag cgcatcgagt gcactg
//
LOCUS       DATGBK010000105         2110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1392, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000105 DATGBK010000000
VERSION     DATGBK010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1392"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1376
                     /locus_tag="VKJ77_01530"
     CDS             <1..1376
                     /locus_tag="VKJ77_01530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018009093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC43984.1"
                     /translation="FLLRRQAEENLRFIANHDALTGLPNRLMFRDRLEEALLRARREE
                     ITLHVLFIDLDQFKDVNDSLGHNAGDQLLRAVADRLRQQVVQPGMIARLGGDEFIVLV
                     EEPLDEDPGVQRTVDAIQGALCAAFVVSGRQLQVTASIGISSFPGDGDDAQTLLKHAD
                     IAMYGAKQRGKNTFQLYVREMSTSLQRRIDMESHLRHAVDNGEFVLHYQPRICLRTNR
                     CTGVEALIRWDHPTLGRVMPMDFIPLAEETGAIVPIGAWVLREACRQNAEWLARGQGP
                     IRVSVNLSARQFADPHLHDDIVEALARAQLPGDLLELELTESMVMRHPEQAAGWLANL
                     KRTGVRLSIDDFGTGYSSLAYLNHFPIDVIKIDRSFIRDVPDSLSDTQIASAVIALGH
                     SLGLEVVAEGAETQAHIDFLRNEGCDEVQGYFYSRPIPAGDMTSFLSHRLDCGLAEKQ
                     GPQTVRA"
     gene            1423..2010
                     /locus_tag="VKJ77_01535"
     CDS             1423..2010
                     /locus_tag="VKJ77_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43985.1"
                     /translation="MQQQARDVAGTWQAIDELEFDRMKAKLLHQQNRGWTVEAVTRAE
                     HGYRQFLKLSAKYPGVAIVPGEEVDQFWHAHILDTQRYACDCERIFGHVLHHNPYVGI
                     DGTDDEAHLVELAAATGELLAREFGAASVDEPAYCAITPGVEAKPAYCAVSPGAQAKP
                     AYCAVSSGAQAKPAYCAVSQTRPRVAHAPGSAGCV"
BASE COUNT          403 a          650 c          677 g          380 t
ORIGIN      
        1 acttcctgct gcgacgccag gccgaagaga atctgcgctt catcgcgaat cacgacgcgc
       61 tcactggtct gcccaaccgc ctgatgttcc gggaccggct ggaagaggca ctgctgcgcg
      121 cacgccgcga ggagatcacg ctccatgtcc tgttcatcga tctggatcag ttcaaggacg
      181 tcaatgactc actgggacac aacgccgggg accagctgct gcgtgccgtt gccgaccgcc
      241 tgcggcagca ggtggtgcag cccgggatga tcgcccgtct gggtggcgac gaattcatcg
      301 tgcttgtcga ggagccgctc gatgaggatc cgggcgtcca gcgtactgtt gacgcaatcc
      361 agggcgcgct ctgcgcagca tttgtggtga gcgggcgaca attgcaggtt accgccagca
      421 tcggtatcag ttcgtttccc ggtgacggcg atgatgccca gacgctgctc aagcacgccg
      481 atatcgcgat gtatggcgcg aagcagcgag gcaaaaacac gtttcagttg tatgtccgcg
      541 agatgagtac ctccctgcag cggcgtatcg acatggagtc gcatttgcgg cacgcggtcg
      601 acaacggcga gttcgtgctg cactatcagc cgcgcatctg cctcaggaca aaccgctgta
      661 cgggtgtcga ggcgctgatc cgctgggatc acccgacgct cggacgggtt atgccaatgg
      721 atttcatccc gctggccgaa gaaacaggag cgatcgtgcc gatcggcgca tgggtgctgc
      781 gcgaagcgtg ccggcagaac gccgagtggc tggctcgtgg gcaggggccc atacgcgtgt
      841 ccgtcaatct atcggcgcgc cagttcgcgg atccgcatct gcacgacgac atcgtcgagg
      901 cgctcgcgcg ggcccagttg cccggcgacc tgctcgaact ggaactcacc gagagcatgg
      961 tcatgcgcca tcccgaacag gcggccggct ggctcgcgaa cctgaagaga accggcgtgc
     1021 gtctgtcgat cgacgatttc ggcaccgggt attcatcgct tgcctatctg aaccacttcc
     1081 cgatcgacgt gatcaagatc gatcgctcgt ttattcgcga cgtacccgac agcctgagcg
     1141 acacacagat cgccagcgcc gttattgctc tcggccacag cctcggcctg gaggtggtcg
     1201 ccgaaggtgc cgagactcag gcgcacatcg attttctgcg taacgaaggc tgcgatgaag
     1261 ttcaggggta cttctacagc cgtcccattc ctgccggtga catgacgtct ttcctgagtc
     1321 atcggctgga ctgcggtctt gccgaaaagc agggaccgca aaccgtgcgt gcgtgaggcg
     1381 gaaacctctg acgcgcccat cacatgtgaa aggagcttta ccatgcaaca gcaggcacga
     1441 gacgtagcag gaacctggca ggccattgat gaactcgagt ttgacaggat gaaggcgaag
     1501 ctgcttcacc agcagaaccg cgggtggaca gtcgaggcgg tgacgcgcgc cgagcacggc
     1561 taccgccaat ttctgaaact gtcggcgaag tatccaggcg tcgccattgt gccgggcgag
     1621 gaagttgatc agttctggca cgcgcacatt ctggacacac agcgctatgc gtgcgattgc
     1681 gagcgtatct tcggccatgt gctgcaccac aatccctatg tcggcatcga tggcaccgac
     1741 gacgaagcgc atctggtgga gctggcggcc gcgacgggtg aactgctggc gcgcgagttc
     1801 ggcgcggcat cggtggatga gccagcgtac tgcgcgatca caccgggtgt ggaagcgaaa
     1861 cccgcctact gcgcggtctc gccaggtgcg caagcaaaac ccgcctactg cgcggtctcg
     1921 tcgggtgcgc aagcaaaacc cgcctactgc gcggtctcgc agacacgccc gcgtgtggcg
     1981 cacgcgccgg gtagcgcagg ctgcgtctga gcgcctgtcc tgtcagcacc cgatcgccca
     2041 cgtccatcgg accgggcgat cggggcgacg cggtgttcgg tcctgacagg cctgccacac
     2101 gcgcgagagc
//
LOCUS       DATGBK010000106         2910 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_140223, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000106 DATGBK010000000
VERSION     DATGBK010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140223"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1906)
                     /gene="dnaE"
                     /locus_tag="VKJ77_01540"
     CDS             complement(<1..1906)
                     /gene="dnaE"
                     /locus_tag="VKJ77_01540"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012212971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HMC43986.1"
                     /translation="MSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDL
                     GNAFGLVRFYKEARSKGVKPIAGCDVWITNPADRDKPARLLLLVKNQRGYLNLCELLS
                     KAWLTNQYRGRAEVEYEWLESGLSEGLLALSGAQHGDIGMAFAAGNDQAAQRHAERWA
                     ALFPGAFYIELQRAALPGGETYIQQAVALAAKLKLPVVATHPMQFMTPDDFTAHEARV
                     CISEGDILANPRRQKRFTTEQYFRTQEEMCALFADIPSALANTVEIAKRCNLKLELGK
                     PKLPLFPTPDGMSLDDYLVHLSKEGLEKRLVQLYPDEAVREAQRETYYARLEFECKTI
                     IGMGFPGYFLIVADFIMWAKNNGVPVGPGRGSGAGSLVAYALFITDLDPLKYNLLFER
                     FLNPDRVSMPDFDIDFCQEGRDRVIQYVKQKYGADAVSQIATFGTMAAKAAVRDIGRV
                     LDLGYMFTDGIAKLIPFKPGKHVTIADALKEEPTLQERFDNEDEVHQLIELAQRVEGL
                     TRNVGMHAGGVLIAPGKLTDFCPLYTQGEDGGVVSQYDKDDVEAVGLVKFDFLGLTTL
                     TILDWAERYIRRLDPSKKDWNLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKD
                     AQPDRFEDIIA"
     gene            2178..>2910
                     /locus_tag="VKJ77_01545"
     CDS             2178..>2910
                     /locus_tag="VKJ77_01545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HMC43987.1"
                     /translation="MSIVNLSAYKFVTIESGADWRPLIVDRCTALSLRGTILLAPEGI
                     NLFVAGEPEQIGTFMHYLRSDPLFEGKFADLEFKESMSETQPFGKMLVKLKREIITMK
                     KPAIRPELGRAPSVGAATLRSWLDRGHDDEGRPVVMLDTRNAFEVDVGTFDQALDYRI
                     AKFSEFPGVIEEHRADLEGKTVVSFCTGGIRCEKAAIHMKEVGIDHVYQLEGGILKYF
                     EEVGGAHYHGECFVFDHRTALNAALE"
BASE COUNT          590 a          869 c          866 g          585 t
ORIGIN      
        1 gcgcgatgat gtcctcgaag cggtcaggct gtgcatcctt cagcatgccc tgcatgccgc
       61 ggctttcaag ctggaacacg gcgactgtat tcgctttctt gaggatctgg aacgaagcgg
      121 gatcgtcgag cggaacctgc gaaagattcc agtctttctt cgacggatcc agacgacgga
      181 tgtaccgctc agcccagtcg agaatggtga gcgtggtcaa ccccaagaag tcgaacttca
      241 ccagcccgac tgcttcgacg tcgtccttgt cgtactggct gaccaccccg ccgtcttcac
      301 cctgcgtgta cagcgggcag aagtccgtga gcttgcccgg cgcgatcaac acgccgcccg
      361 cgtgcatacc gacgttacgc gtcagccctt ccacgcgctg cgcaagttcg atcagctgat
      421 gcacttcgtc ttcgttgtcg aagcgttcct gtagcgtggg ctcttccttc aacgcgtccg
      481 cgatggtcac gtgcttgccc ggcttgaacg ggatcagctt cgcgatgcca tcggtgaaca
      541 tgtagccgag gtcgagcacc cggccgatat cgcgcaccgc cgccttcgcc gccatcgtgc
      601 cgaaggttgc gatctgcgac acggcgtccg cgccgtattt ctgcttcacg tactgaatga
      661 cgcggtcccg cccttcctga cagaagtcga tgtcgaagtc aggcatcgac acgcggtccg
      721 ggttcaggaa acgttcgaac agcaggttgt atttgagcgg gtcgaggtcg gtaatgaaca
      781 gcgcgtacgc gaccagtgaa ccggcgcccg agcctcggcc cggaccgacc ggcacgccat
      841 tgttcttcgc ccacatgatg aagtcggcga cgatcaggaa gtagcccgga aagcccattc
      901 cgatgatggt cttgcactcg aattccaggc gcgcgtaata cgtctcgcgc tgcgcttcgc
      961 gcaccgcttc atcgggataa agctggacca gccgtttctc gagaccttcc ttcgacaaat
     1021 gtacgaggta gtcgtcgagc gacatgccat cgggtgtcgg gaacaacggc agtttcggct
     1081 tgccgagttc gagcttcagg ttacagcgct tcgcaatttc gaccgtgttg gccagtgccg
     1141 acggaatatc cgcgaacaac gcgcacattt cctcttgcgt gcggaaatat tgctcggtcg
     1201 tgaagcgctt ctgacgccgc gggttcgcga ggatatcgcc ctcggaaata cacacgcggg
     1261 cttcgtgcgc cgtgaagtcg tcgggggtca tgaactgcat cgggtgcgta gcgacaaccg
     1321 gcagcttgag cttcgcggcc agcgcgacgg cctgttgaat gtaggtctcg ccgcccggca
     1381 gcgccgcacg ctgcaactcg atgtaaaacg cgcccggaaa gagcgcggcc cagcgctccg
     1441 cgtgacgttg tgctgcctga tcattaccgg cggcgaacgc catgccgata tcgccatgct
     1501 gcgcgcccga gagcgccagc aagccttcag acaatccgct ttccagccac tcatactcga
     1561 cttccgcgcg gccgcgatat tggtttgtca accaggcttt cgacagcaac tcgcacaagt
     1621 tgagatagcc gcgctggttc ttcaccagca acagcaaacg cgcgggtttg tcgcgatctg
     1681 cgggattggt gatccagacg tcgcagccgg caatgggttt gacacccttg ctgcgcgctt
     1741 ccttgtagaa acggacgagg ccgaaagcgt tgccgagatc ggtcagcgcg agcgcgccct
     1801 gaccgtcctt ggcagcggct ttaacgacgt cgtcaaggcg cacgatgccg tcggcaatcg
     1861 agaattcgga gtgaacacga agatggacaa agcggggatc tgacatgacc gatattgtac
     1921 atgcgcctat tcgcgaaatt cgccacgaag gctgcgttag ccgttcggac aaggctaatt
     1981 aacttgacca ataagctggg tgaaaaccag gatgaaaaaa gtgccgcatc ggcgtggagt
     2041 catcggccaa tcggtcgact cggaagcgcg cgccgtttgc gggataatac ggattcggtg
     2101 aacgccccag gcgctcgccg aaaccgtttt ttcctccggc aacgcccgtt ttccagcact
     2161 ttaagagcat ttgcgtcatg agcatcgtca acctttccgc ctataagttc gtgaccatcg
     2221 agagcggcgc cgactggcgt ccgctgattg tcgaccggtg caccgcgctc agcctgcgcg
     2281 gcacgatcct gctcgcgcca gagggcatca acctgtttgt cgcgggcgag ccggagcaga
     2341 ttggcacgtt catgcactac cttcggtcgg atccgctttt cgagggcaaa ttcgccgatc
     2401 tcgagttcaa ggaaagcatg tcggagacac agccgttcgg caagatgctc gtcaagctga
     2461 agcgcgaaat catcaccatg aaaaagcccg caatccggcc tgaacttggc cgcgcgccgt
     2521 ccgtcggcgc agccacgctg aggtcgtggc tggatcgggg acatgacgac gagggccgtc
     2581 ccgtggtcat gctcgacacg cgcaatgcgt tcgaagtcga cgtcggtacg ttcgatcagg
     2641 cgctcgatta ccgcatagcg aaattcagtg agtttccggg cgtaatcgaa gagcatcgcg
     2701 cggatctcga gggcaagaca gtggtgtcgt tctgcacggg cggaattcgc tgcgaaaaag
     2761 cggcaatcca catgaaggaa gtgggcattg accacgtcta tcaacttgag ggcggcattc
     2821 ttaaatactt cgaagaagtg ggcggcgcgc attaccacgg cgagtgtttt gtattcgatc
     2881 accggacagc attgaatgct gcgctcgaac
//
LOCUS       DATGBK010000107         1700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_70852, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000107 DATGBK010000000
VERSION     DATGBK010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70852"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            176..1162
                     /locus_tag="VKJ77_01550"
     CDS             176..1162
                     /locus_tag="VKJ77_01550"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HMC43988.1"
                     /translation="MAFVIWSRRNVSHQRVRFVEARTVRAMVIVAVIAMILAALALGI
                     AIGAAMGNTHAAEEKTQTERRSYEIDELGKISATLTHIEPRVIELVSQVNELQDFEAQ
                     LKAARRAADRPDIHVVPPLPDNDDESPLDSSASGGPSLPPRLCDAQHAALAGSAPQRL
                     KHTQSALDCLDATIGLLDDAVLAHYASYMAFPGRQPAPGARSGSPFGNRIDPFTGHLN
                     FHPGVDLVAPTGTTIFASAGGRVVQAGPHGGYGNAVDIQHSSGVITRYGHTSKIFVKV
                     GDLVMPGQKIAEIGSTGRSTGPHLHFEVIIDGTQVNPTPYLALFKLKSNAAS"
     gene            1236..1526
                     /locus_tag="VKJ77_01555"
     CDS             1236..1526
                     /locus_tag="VKJ77_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43989.1"
                     /translation="MLMLGTIAAACAAAALAAAGFALVTSRDNSKKADALCAPPMSER
                     EIREQLSKARIALDHEVATRLVMEQQASESLAEIHRMRTDLTFLKRQRDKSN"
BASE COUNT          341 a          574 c          472 g          313 t
ORIGIN      
        1 tcgcgtaacg ggtgcataat cgtccgccca taaggctttc cgccgtagcc ctgctgcggc
       61 gttttcacat ggacgtgacc tttatttatc tcattattaa cactcgcaga cagaccggta
      121 atccaccgcc cgttcgtcct ctcttgctcg cgcgtttgcc gcgcagggtg cactgatggc
      181 gttcgttatc tggtcccgcc ggaacgtgtc gcaccagcgt gtgcgtttcg tcgaagcgcg
      241 cacggtccgc gccatggtga tcgtcgccgt cattgcgatg atcctggccg cgctcgcgct
      301 tggcatcgcc attggtgctg ccatgggcaa tacccatgca gccgaagaga agacgcaaac
      361 agagcggcgc tcctacgaga tcgatgaact cggcaagatc agcgcaacac tcacgcatat
      421 cgaaccgcgc gtgatcgaac tcgtgtcaca agtgaatgaa cttcaggact tcgaagcaca
      481 attgaaagcg gcgcgacgcg cggcggatcg tccggacatc cacgtggttc caccgcttcc
      541 cgataacgac gatgaatcgc cgctcgacag cagcgcatcg ggcggtccat ccctgccgcc
      601 ccgcctctgt gacgcccagc atgcagcgct tgccggttcc gcgccgcagc gcctgaagca
      661 cacgcaaagc gcgctggatt gcctcgatgc aaccatcggc ctactcgatg acgccgtgct
      721 cgcgcattac gcgtcataca tggcgtttcc gggccgccag cccgcgcccg gcgcgcgctc
      781 cggctcgcca ttcggcaacc gcatcgaccc gtttacggga cacctgaact ttcatccggg
      841 cgttgacctc gtcgccccca ccggcacgac catcttcgcg agcgccggtg gccgcgtggt
      901 gcaagcggga ccgcacggcg ggtacggcaa tgccgtcgat atccagcaca gcagtggcgt
      961 gatcacccgc tacgggcata catcgaagat attcgtgaag gtgggcgatc ttgtgatgcc
     1021 cggccagaag attgccgaaa ttggctcgac cggacgctcg accggaccgc atttgcactt
     1081 cgaggtgatc atcgacggga cgcaggtcaa tcccacgcct tatctcgctc tcttcaagct
     1141 gaaatccaat gccgcaagct gatcgaaaca ggccgtcgca caagctcacg cgccgcacct
     1201 attccctgac atcgagacgt ggaccgacct ggcccatgct gatgctcggc acgatcgcag
     1261 cggcctgcgc cgcggcggcg ctggccgctg ccggcttcgc gctcgtcacg tcgcgcgata
     1321 acagcaagaa ggccgacgcc ctgtgcgcac cgcccatgtc tgaacgcgag atccgcgagc
     1381 agctttcgaa ggcgcgtatc gcgctcgacc acgaagtcgc gacacggctc gtcatggagc
     1441 aacaggcgtc cgaaagcctg gcggaaattc atcgaatgcg aactgacctg actttcctca
     1501 agcgtcagcg ggataagtcc aactgaccgt gtccatctga ccgatcccgg agcccaccca
     1561 ccacgccggc acatcaatcc gttcattacc ggcaaccatt ttgcaatcca gaccagaagg
     1621 ggttttccca tgttcaagaa aaaatctccc ggcgtcagtc aagccaagct agctacgctg
     1681 atcgcacacg atgtccagat
//
LOCUS       DATGBK010000108         2213 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_163302, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000108 DATGBK010000000
VERSION     DATGBK010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163302"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..165
                     /locus_tag="VKJ77_01560"
     CDS             <1..165
                     /locus_tag="VKJ77_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004189587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HMC43990.1"
                     /translation="FGTRKAMPVYVESTILDLDTIYLNGGRRGYLVTIAPPVLTDLLE
                     ATPVNCASVD"
     gene            234..857
                     /gene="plsY"
                     /locus_tag="VKJ77_01565"
     CDS             234..857
                     /gene="plsY"
                     /locus_tag="VKJ77_01565"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HMC43991.1"
                     /translation="MNNVIVAVVAYLIGSISFAVVVSSAMGLADPRSYGSGNPGATNV
                     LRTGNKLAAILTLLGDAFKGWLPVWFVVHFGARFGLDSTAIALAAIAVFLGHVFPIFF
                     KFQGGKGVATAAGVLLAINPVLGLATLLTWVIIAVFFRYSSLAALVSAVFAPFFDVFL
                     FGPSRISLAVAAMSALLIWRHRGNIKKLLDGKESRIGEKKQTAEAVK"
     gene            complement(953..1438)
                     /locus_tag="VKJ77_01570"
     CDS             complement(953..1438)
                     /locus_tag="VKJ77_01570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004189237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HMC43992.1"
                     /translation="MPSFDVVSEANMIEVKNAIEQSNKEIATRFDFKGSDARVEQKDR
                     DLTLFADDDFKLGQVKDVVLSKLAKRNVDVRFLDYGKIEKIGGDKLKQVVEIKKGVTG
                     DLAKKIVKMIKDSKIKVQASIQGDAVRINGTKRDDLQSAIALLKKDVTDTPLDFNNFR
                     D"
     gene            1575..>2213
                     /locus_tag="VKJ77_01575"
     CDS             1575..>2213
                     /locus_tag="VKJ77_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006024775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HMC43993.1"
                     /translation="MSEFQLLSDYPLLAHNTFGFDVRAKHAVRLTEEAQILALARDAR
                     LNGLPQLVLGGGSNVVLTRNFDGVALLVELRGRRVINEDSEAVFVEAGAGENWHEFVA
                     WTLSQGLPGLENLALIPGTVGAAPIQNIGAYGLEMGERFERLRAIELSTGEVREFDRD
                     ACAFGYRDSFFKQEGRGRFVIVSVTFRLPKAWTPRADYADIARALEKSGENSS"
BASE COUNT          401 a          626 c          666 g          520 t
ORIGIN      
        1 tttggcacga ggaaggcgat gccggtgtac gtggaatcga ccatcctgga cctggacacg
       61 atctatctga acggcggacg gcgcggatat ctggtgacca ttgcgccacc ggtgctgacc
      121 gacctgctgg aggccacgcc cgtgaattgc gcgagcgtcg attaaaatgc gcgtcctgaa
      181 gtcttgctca cgtctcgttc acgcttggcg ttcccgaaga taagaagaaa tcaatgaaca
      241 atgtgattgt tgctgtggtg gcttacctga tcggctcgat ctcgtttgcg gtggttgtca
      301 gttcggccat gggtcttgcc gacccgcgtt cgtacggttc cggcaacccg ggcgcgacga
      361 acgtgctgcg cacgggcaac aagctggcgg ccatcctgac gctgctcggc gatgcgttca
      421 aaggctggct acccgtatgg ttcgtcgtgc atttcggcgc ccggttcggg ctggattcca
      481 cggctatcgc gttggcggcc atcgccgtgt ttcttgggca tgtgttcccg atattcttca
      541 agttccaggg tggcaaaggt gtagcgaccg cggcgggcgt gctgctcgcc atcaaccccg
      601 tactgggact agccaccttg ctgacgtggg tgatcatcgc ggtcttcttc cggtattcgt
      661 cactggcggc gttggtgtcg gcggtattcg cgcctttctt cgatgtattc ctcttcggcc
      721 cgagccgtat atcgctggct gttgccgcga tgagcgcgct gctgatttgg cggcatcgcg
      781 ggaatatcaa gaagctgctg gatgggaagg agagccggat tggagagaag aagcagacgg
      841 cggaagcggt taaataaact ggcgcgtaaa accgcgccgc ggaaatgaga aaaccgcccg
      901 aaggcggctt cttgctcgtt gcggtttctg gctcaacgca agccggtcag actcaatcgc
      961 ggaaattatt gaagtccagc ggtgtatccg tcacgtcctt tttcagcaac gcaattgcgc
     1021 tttgcaggtc atcgcgcttc gtgccgttga tgcgcaccgc gtcgccctga atgctggcct
     1081 ggaccttgat cttgctgtcc ttgatcatct tgacgatttt cttcgcgaga tcgccggtca
     1141 cgcctttctt gatttcgacg acctgcttca gcttgtcgcc gccaatcttc tcgatcttgc
     1201 cgtaatcgag aaaacgcacg tccacattgc gttttgccag tttcgacaac accacgtcct
     1261 tgacctggcc gagcttgaaa tcgtcgtcgg caaaaagcgt cagatcacga tccttttgct
     1321 cgacgcgcgc gtccgaaccc ttgaagtcga agcgcgtggc aatttccttg ttcgattgtt
     1381 cgatggcgtt tttcacctcg atcatgtttg cttcgctgac gacgtcaaac gatggcatct
     1441 gcattcccct tcgttgaggc gaggcgtgac gtaaggctcg cacgcactcg ctataatcac
     1501 ggaccaccgt cattctaccg atgccgtccc ggtttgccca aggccgcccc tgatctgacc
     1561 caagcgcttc ctcaatgtcc gagttccaac ttctctccga ttacccgctg ctcgcgcata
     1621 acacgttcgg tttcgacgtc cgcgccaagc atgccgttcg gctgacggaa gaagcgcaga
     1681 ttctggcgct tgcccgtgac gcccgactaa acggcctgcc gcagctagtg ctcggcggcg
     1741 gcagcaacgt cgtgctgacg cgcaatttcg acggtgtcgc gttgctcgtc gaattgcgcg
     1801 gacgccgcgt gatcaatgaa gatagcgaag ccgttttcgt agaagccggc gcgggtgaga
     1861 actggcacga attcgtggca tggacgttgt cgcaaggttt gcccgggctc gaaaatcttg
     1921 cgctgattcc cggcacggtg ggcgcggcgc cgattcaaaa cataggcgcc tacgggctcg
     1981 aaatgggcga gcgcttcgag cgtttgcggg cgattgaatt atcgacggga gaagtgcggg
     2041 aattcgatcg cgacgcgtgc gcgttcggct accgcgacag ttttttcaag caggaagggc
     2101 gcgggcgttt tgtgattgta tcggtgacct ttcgtttgcc gaaagcgtgg acgccacgcg
     2161 cggattacgc ggatatcgcc cgtgcgcttg agaaaagtgg cgagaacagt tcc
//
LOCUS       DATGBK010000109         3411 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_24537, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000109 DATGBK010000000
VERSION     DATGBK010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24537"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VKJ77_01580"
     CDS             complement(<1..380)
                     /locus_tag="VKJ77_01580"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HMC43994.1"
                     /translation="MQKIPDVRATPESMQKAFAEKRTLSCVWFAMGSTPLVEIGMTAE
                     PDLIVIDRQHGLWERTALEAVIGQVRFQVPVIVRVGENSAQAIAEALDAGAASALVPL
                     VESADEARRAVSFGRYPPFGQRSAG"
     gene            complement(531..1469)
                     /locus_tag="VKJ77_01585"
     CDS             complement(531..1469)
                     /locus_tag="VKJ77_01585"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017454099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HMC43995.1"
                     /translation="MKAIQYSRYGAPDVLELVTLDDPIAGPNQVRVRLKAAGVSPIDA
                     KLRSGALQAHFSLTFPKIPGRDGVGVIDQIGEGVMGLSLGDEVCVAADPTRSGTYAEA
                     MVCASSRVVKKPPNLSTSQAAALLQPGVSAWISMCRTATLSDGMSVLIHGGAGAVGGQ
                     MIQLARHLRLDVATTCRAGNIDYVLGLGAHRAVAYDRDDFSVLRDFDAVFDLIGGETH
                     ARSYQVLKAGGQLVYLTAMPFENQAEKYGVTVSRAMISDAPEALHAVAQLGTEGVLTP
                     GVMATLPLAAAADAHRQFEAGQITRGRIVLNMEDGG"
     gene            complement(1466..1918)
                     /locus_tag="VKJ77_01590"
     CDS             complement(1466..1918)
                     /locus_tag="VKJ77_01590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003804021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC43996.1"
                     /translation="MIDAHCHSSSIRVQADAQRAFVLMADGERQGRWALGSWKRRTVG
                     AKTFVGESVFTGAETWVRIHADPVALTIDYEVGGNEEGLRFRNAARVFDGPALGHPEG
                     TAVITLFTWRLATQSDDAWAQICSTHETEMFLIRALLESGRDSDVAPA"
     gene            2075..2779
                     /locus_tag="VKJ77_01595"
     CDS             2075..2779
                     /locus_tag="VKJ77_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012217587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EthD family reductase"
                     /protein_id="HMC43997.1"
                     /translation="MDVCLFLIATARAATDLTQTVDPQALHSIAATMPGIKRAVVHVP
                     VEGGANDPYLHAEAPPRCTLQLYFESIDALENVLREGGNAHALLNLTELKECDLTQQV
                     MAVRRFPVPDHGSQSADNPRCTYMVSYEGPAEDLNAWLGHYIDSHPPIMARFPGIREI
                     EIYTRMDYRGALPVARSNAMQRNKVVFDSPDALNAALASPVRHEMRADFKNFPPFSGA
                     NLHFPMISVARDFTNG"
     gene            complement(2806..3324)
                     /gene="hpaC"
                     /locus_tag="VKJ77_01600"
     CDS             complement(2806..3324)
                     /gene="hpaC"
                     /locus_tag="VKJ77_01600"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HMC43998.1"
                     /translation="MNEIDNRKLFREAMAHLSAAVNIITTDGPHGRCGITASAVCSVT
                     DSPPTMLVCVNQSSAAHAVFAGNGNVCINVLPGDQQELARHFAGMTKLPMNARFEQQT
                     WTAGLLGTPVLTDALASLEGRIVERKTVGSHSVMFVEIADMVVRHDGDGLIYFDRDFH
                     RLARVERAPVAC"
BASE COUNT          668 a         1087 c          993 g          663 t
ORIGIN      
        1 cccgccgagc gctgtccgaa aggcggatag cggccgaacg aaacggcgcg gcgcgcttca
       61 tcggcggatt cgactagcgg aaccaatgcc gatgcagcgc cggcatccag cgcttcggca
      121 attgcctgag ccgagttctc gcccacgcga acgatcaccg gaacctgaaa ccgcacctgg
      181 ccgatcaccg cttcaagcgc ggtgcgttcc cacaacccat gttgccggtc aatcacgatc
      241 agatccggct cggcggtcat gccaatctct acgagcggcg tgctgcccat tgcgaaccac
      301 acgcacgaca gcgtgcgttt ttccgcgaac gctttttgca tcgactcggg cgtggcgcgg
      361 acatcgggaa ttttttgcat cgtatagttg cgaggacttc ttcagaaagc gggttggaac
      421 gcgcgggtta gaacgcgctc gtcgaaactc aatcaatcaa ctgatctgaa actgcgttta
      481 cgacattctg aattcagatt attgggttta aaattgggcg tcaagcgttt tcaacctccg
      541 tcctccatgt tcaacacgat ccggccgcgc gtgatctgac ccgcttcaaa ctggcggtgt
      601 gcatcggctg cggcggcgag cgggagcgtg gccatcacgc cgggtgtgag cacgccttcg
      661 gtgccgagtt gtgcgacggc atggagcgct tccggtgcgt ccgagatcat cgcgcgcgag
      721 acggtgacgc cgtatttttc ggcctggttt tcgaacggca tggcggtcag gtagacgagc
      781 tggccgcccg ctttcagtac ctgatatgac cgcgcatgcg tctcgccgcc gatcaggtcg
      841 aacacagcat cgaaatcacg cagcacgctg aagtcatcgc ggtcgtaggc caccgcccga
      901 tgcgcgccga gccccagcac atagtcgata ttcccggcgc ggcaggtcgt tgctacgtcg
      961 agcctgagat gacgcgcgag ctggatcatc tggccaccaa cggcgcccgc gccgccatga
     1021 atcagcacgc tcatgccgtc tgaaagcgtc gcggtccggc acatcgaaat ccatgcgctg
     1081 acgccgggct gaagcaacgc ggcagcttgt gatgtcgaaa ggttcggtgg ctttttcacc
     1141 acgcgtgacg atgcgcaaac cattgcttcg gcgtaggttc cgctgcgagt tgggtcggcc
     1201 gcgacgcaga cctcatcgcc cagggaaagc cccatgacgc cctcgccgat ttgatcgatg
     1261 acacccacgc cgtcgcgccc cggaatcttc gggaatgtca gcgagaaatg cgcttgcaag
     1321 gcgcccgagc gcagcttcgc atcgatcggc gatacccccg cagccttcag gcgaacacgc
     1381 acttgattcg gtcccgcaat cgggtcgtcg agcgtgacga gttcgaggac atcgggagcg
     1441 ccgtaccgcg aatactggat cgctttcatg ccggtgcaac gtcgctgtca cggcccgatt
     1501 caagcagtgc gcggatcagg aacatctcgg tttcgtgcgt cgagcagatt tgcgcccatg
     1561 cgtcgtcgga ttgcgttgcc agccgccacg tgaaaagcgt aatgacagcc gtgccctccg
     1621 ggtggcctaa cgcggggccg tcgaatacgc gcgcggcatt gcgaaatcgc aggccttctt
     1681 cattgccgcc gacctcgtaa tcgatcgtca atgcgaccgg atcggcatga atccgcaccc
     1741 aggtttcggc tcccgtgaac acagattccc caacgaacgt cttcgcccca accgttctgc
     1801 gcttccagct tccgagcgcc catcggcctt gacgctcccc gtcggccatc agtacaaatg
     1861 ctcgctgggc gtcagcctga acgcgaatgc tgctgctatg acaatgcgcg tcgatcacga
     1921 tgactttcct gataggtttt caaaaagggc gtggacgaaa aaatcgcacc taaagccttt
     1981 tgcaacattc tgaattcaga ttattatcgg aaacactgtt cgtcaagcga cgtttccaaa
     2041 tcgttttcag cctgtccaac cggaagcaaa actcatggat gtctgcctct ttctaattgc
     2101 gaccgcgcgc gccgcgaccg acctgactca aacggtcgat ccgcaggcgc ttcactcgat
     2161 tgccgcgacc atgcccggca tcaaacgcgc cgtggtccac gtgcccgtgg aaggcggcgc
     2221 gaacgacccg tatctgcacg ccgaggcgcc gccgcgttgc acactgcagc tttatttcga
     2281 gagtatcgat gcgctggaaa acgtcttgcg cgaaggcggc aatgcgcatg cgctattgaa
     2341 tctgacagaa ttgaaagaat gcgacctgac gcagcaggtc atggctgtgc ggcgtttccc
     2401 ggtaccggac cacggctcgc aatcggccga taacccgcgc tgcacctaca tggtcagcta
     2461 cgagggtcct gccgaagatt tgaacgcgtg gctgggtcat tacatcgata gccacccgcc
     2521 gatcatggcg cgtttccccg gcattcggga gatagagatc tacacgcgga tggattatcg
     2581 cggcgcgcta ccggtggcgc gatcaaacgc catgcagcgc aacaaagtgg tcttcgattc
     2641 gcccgacgcg ttgaacgccg cgctggcgtc gccggtgcgc cacgagatgc gcgccgactt
     2701 caagaacttc ccgccgttca gcggcgcgaa cctgcatttc ccgatgatca gcgtcgcgcg
     2761 tgacttcacg aacggctgac cggcgcgcga tggcgcccca cgctttcagc aagcaaccgg
     2821 cgctctctcc acccgcgcca gccgatgaaa atcgcgatcg aaatagatca ggccgtcgcc
     2881 atcgtggcgc accaccatgt cggcgatttc cacgaacatc accgagtgcg acccgaccgt
     2941 cttccgctcg acaatccgtc cttccaggct cgcgagggca tcggttaaaa cgggcgtgcc
     3001 aagcagtccc gcggtccagg tctgctgctc gaagcgtgcg ttcatcggca gcttggtcat
     3061 gccggcgaag tgccgcgcaa gttcctgctg atcaccgggc agcacgttga tgcagacatt
     3121 gccattcccc gcgaacactg catgcgcggc gctcgactgg ttcacgcaga cgagcatggt
     3181 aggcgggcta tccgttaccg aacatacagc gcttgccgtg atgccgcagc ggccatgcgg
     3241 gccatcggtc gtaatgatgt tcaccgccgc cgacagatgc gccatggctt ctcggaacag
     3301 tttgcggtta tcgatttcgt tcatgctgtc tcccgcctta cggatacggc gtgatcgtgg
     3361 gcgcgatgcc cgcgaaaatg gcgccggcgc cgtcataggt cgcttcgccc a
//
LOCUS       DATGBK010000110         2769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1438, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000110 DATGBK010000000
VERSION     DATGBK010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2769
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1438"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..1028
                     /locus_tag="VKJ77_01605"
     CDS             96..1028
                     /locus_tag="VKJ77_01605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012212522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MinD/ParA family protein"
                     /protein_id="HMC43999.1"
                     /translation="MDKFLSDQAEGLRRLLTRNGSRVVAVCGAPAGGLGGTGNTSTVV
                     NLASALAAQGKDVLVIDERQNALSVSRLVKLPDNGALGAVLSGKRFLQDAVTRTPFGF
                     SVIAAPRDERISQDAAHYRVLLDGPADVVLIDTQLDRSGALSNLAVQAHDFVIVTRVA
                     PAAITEAYACIKRLHYAHAIGQFRVVVNHVKNGADAQVAFDNLAGVASRYLAVQLVPA
                     GCVAEDPRVARAHELSRCAVEAFPATAAARDYRQIAAELQYWPMPKASQFEWPVQPSR
                     AETQHGLERSINSGAVRRTETPLMQLAMSSPASV"
     gene            1059..1790
                     /locus_tag="VKJ77_01610"
     CDS             1059..1790
                     /locus_tag="VKJ77_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012492271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HMC44000.1"
                     /translation="MYNAQGKLSQSEVLTRYAPLVRRLGLQLVAKMPASVDLDDLIQA
                     GMIGLLDAASRYKEDQGAQFETYASQRIRGAMLDELRANDWLPRSMRKTSREVESAVH
                     KVEQHLGRSASEQEVAEHLNMPLEEYQAMLQDLHGSQLIYYEDFDRSSDDEPFLDRYC
                     VDKADPLSALLDGSLRSALVDAIDKLPEREKLLMSLYYEKGLNLREIGAVMEVSESRV
                     CQLHSQAVARLRAKLREQAWSGVEA"
     gene            complement(1822..>2769)
                     /locus_tag="VKJ77_01615"
     CDS             complement(1822..>2769)
                     /locus_tag="VKJ77_01615"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HMC44001.1"
                     /translation="PTPAAIASFHALALCLIYGVATRLIISKMQRQSDLRLACTTVAD
                     QALLTVVLGAGGALTLPMLWAVFLFLIGAAGRYGKRTLALSCGTALLGIVALSVLQPW
                     WMINQSAALGIGLSVLGASIYLAVLIGRLGSANRDLALKAGTDPLTGLSNRYMLEQTI
                     GRAVMAISTGQEGATALLLIDLDGFKEVNDTYGHEVGDVVLQTFAALLAGRVRITDTV
                     ARLGGDEFVVLARHVTGSHAVQTVANGVHAVLAEMTSVQDRVVNVSASIGACLISPDL
                     SPGYRDIAVLMRAADRAMYRAKGLGKGQTEFAQGADFET"
BASE COUNT          511 a          866 c          882 g          510 t
ORIGIN      
        1 cgacggctcg ccgttcgtgc cgcaagacga cgacgtgccg ccgctcctgt ccgcgctctc
       61 agcgcgcgct tctaccgaac tgcatgaggt tcactttgga taagttcctg tcggatcagg
      121 ctgaaggttt gcgccgtctg ctgacacgca acggttcccg ggtcgtggcg gtgtgcggtg
      181 ccccggcagg tggattgggg gggaccggca atacctcgac ggtcgtcaac ttggcctccg
      241 ccctcgccgc gcaaggtaag gatgtgctgg tgatcgacga gcgccagaac gcgttgtcgg
      301 tgagccggct ggtcaagctg ccggacaacg gtgcactggg cgctgtcttg tcaggcaagc
      361 gttttttgca ggatgccgtc acgcgcacgc cgttcggctt ttcggtgatc gccgcgcctc
      421 gcgatgaacg catcagccag gacgccgcac attaccgcgt gctgctcgac ggacccgccg
      481 atgtcgtcct gatcgatacc cagctcgatc gcagcggcgc gctgtcgaac ctggccgtgc
      541 aagcgcacga cttcgtgatc gtgacccgcg tggcgcctgc cgcgatcacc gaggcgtacg
      601 cctgcatcaa gcgtctgcac tacgcgcacg ctatcgggca gttccgggtt gtcgtgaatc
      661 acgtgaagaa cggcgccgat gcacaagtcg ccttcgataa cctcgcgggt gttgcaagcc
      721 gctaccttgc ggtgcaactc gtgccggcag gttgcgtggc tgaggatcct cgcgtggctc
      781 gggcgcatga gctgtctcgt tgcgcggtgg aagcttttcc ggcgacggcc gccgcccggg
      841 attatcggca gattgccgct gaattgcagt actggccgat gccgaaagcg tcgcagtttg
      901 aatggcccgt gcagccctcg cgagcggaaa cgcagcatgg gttggagcgc tcgatcaact
      961 ccggcgcggt acgccgcacg gaaacgccat tgatgcagct tgcgatgagc agccccgcgt
     1021 ccgtgtgatg ccgcaagaga aggaacaagg tgaatgcgat gtataacgcc caaggaaaac
     1081 tgtcacagtc cgaggtcctg acccgctacg caccgttggt gcgccggctc ggcctgcagc
     1141 tcgtggcaaa aatgccggct agcgtcgatc ttgacgactt gatccaggcc ggcatgatcg
     1201 gcttgctgga tgccgccagc cgctataagg aagatcaggg cgctcagttc gagacctacg
     1261 ccagccagcg gattcgcggc gcgatgctcg atgagctgcg cgccaacgac tggctgccgc
     1321 gcagcatgcg caagacctcg cgcgaagtcg aatcggcggt gcataaggtt gagcagcatc
     1381 tcggccggtc ggcgagcgaa caggaagtgg ctgagcacct gaacatgccg ctcgaagaat
     1441 atcaggccat gctgcaggat ctgcatggca gccagttgat ctattacgaa gacttcgacc
     1501 ggtcttccga tgacgagccg tttctcgacc gttattgcgt cgataaagcc gacccgctct
     1561 ccgcgttgct cgacggcagc ttgcgctcgg cgctggtcga tgccatcgat aaattgcctg
     1621 agcgcgaaaa gctgctgatg agcctgtatt acgagaaggg gctgaatctg cgtgagattg
     1681 gcgctgtgat ggaagtcagc gaatcgcgtg tgtgccagtt gcacagtcag gccgtcgcac
     1741 ggctgcgggc gaagttgcgg gaacaggcgt ggtcgggcgt ggaggcttga cgtccgccgg
     1801 tcgtgagttc ttaaacgcag atcaggtttc gaaatccgct ccctgcgcga actccgtctg
     1861 gcctttgccc aaccccttgg cgcgatacat cgcgcgatcc gctgcacgca tcagcacggc
     1921 aatatccctg taaccagggc tcaggtccgg cgaaatcagg caggcaccaa tactcgccga
     1981 tacattcacc acccggtctt gcaccgacgt catctccgcc aacaccgcgt gcacgccgtt
     2041 tgccaccgtc tgcaccgcgt gactgccggt cacgtgccgc gccagcacga cgaattcatc
     2101 gccgccgagc cgcgcgactg tgtcggtgat tcttaccctt cctgccagca gcgccgcgaa
     2161 cgtttgcagc acgacgtcgc cgacttcgtg gccgtaggta tcgttgactt ccttgaagcc
     2221 gtcgagatcg atcagcagca gcgcggtcgc gccttcctgt cccgtcgata tcgccatcac
     2281 cgcccggccg atggtctgtt ccagcatgta gcggttgctc aagcccgtga gggggtcggt
     2341 accggccttc aacgcgaggt ctcggttcgc gctgccgagg cggccgatta gcaccgcgag
     2401 atagatcgat gccccgagga cgcttaggcc aatccccagc gccgcggact gattgatcat
     2461 ccaccagggc tgcaagacgg acaacgcgac aatacccaac agcgccgttc cacacgacaa
     2521 cgccagcgtg cgcttgccgt aacgcccggc cgcgcctatc aggaaaagaa aaacggccca
     2581 cagcatgggc agggtgagcg cgcctccggc accgaggacc acggtgagca gggcctgatc
     2641 ggcgacagtt gtgcaggcga ggcgcagatc cgactgccgc tgcattttgc tgatgattag
     2701 ccgggtcgcg acgccgtaga tcagacagag cgcaagcgca tggaaactgg cgatggcggc
     2761 gggcgttgg
//
LOCUS       DATGBK010000111         2350 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_24555, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000111 DATGBK010000000
VERSION     DATGBK010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24555"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VKJ77_01620"
     CDS             <1..388
                     /locus_tag="VKJ77_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HMC44002.1"
                     /translation="VDDAAFYDDEKFALVPMGFCFPGRGASGDLPPRPECAAHWHHDL
                     LAQMRSVRLTLLIGQYAQRFGLGAANGTTLTDTLLRWRDFGPQVIPLPHPSPRNIAWF
                     KRNPWFEADVLPTLRERVARALSASE"
     gene            complement(542..1174)
                     /locus_tag="VKJ77_01625"
     CDS             complement(542..1174)
                     /locus_tag="VKJ77_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44003.1"
                     /translation="MSVMSSTSLRLKLGVSVAALAFASVAFAQAPAAKPSRIRGDIVS
                     LSGDTLTVHRRSGDTVTIDMKQDTPVTAVKNIKLADIKPGSFIGTAATTGTDGKMTAT
                     EVVVFPEAARGTGEGHYAWDLSPNSTMTNANVDQVVTGTSGRDLKLSYKGGSNTVTVP
                     DGVPVVTFAPAARTDLVAGKKVFIVASPVSATEFAASRVVVEKDGVAPPM"
     gene            complement(1211..1999)
                     /locus_tag="VKJ77_01630"
     CDS             complement(1211..1999)
                     /locus_tag="VKJ77_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019449197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HMC44004.1"
                     /translation="MLNRKSELIAANAKLDVDNILKDARNELKAPARRLFGKRILSLG
                     GLMMLSGCNISDDKSVNTVLRTMSRFNDDAQAFLFDPNKLAPTYPESMITRPFPFNAF
                     YDIDDVPIVDAATYKLPVGGLVKGKNVWTLEELRALPQESQVTRHICIEGWSAIGKWG
                     GVRFSDFLKRSGADTTAKYVAFHCADNYSTSIDMPTALHAQTLLALTYDGQVLPPKYG
                     FPMKLRMPTKLGYKNPKHIVSITVTNEYPGGYWENQGYNWFGGA"
     gene            complement(2003..>2350)
                     /locus_tag="VKJ77_01635"
     CDS             complement(2003..>2350)
                     /locus_tag="VKJ77_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HMC44005.1"
                     /translation="GRFRRKLFPLSVKSLFGDLCAALTGKLKHDDLTHYNAVQKAAYL
                     AVIVDIVVVILSGLAVWKSVQFPWLRDLMGGYDNARVVHFFAMSFLVAFFVLHVVMVA
                     LVPRSLLLMIRGR"
BASE COUNT          494 a          722 c          661 g          473 t
ORIGIN      
        1 cgtcgacgat gcggcctttt acgacgatga aaaatttgct cttgtgccga tgggcttctg
       61 cttcccaggc cgtggcgcaa gtggcgactt gccaccacgg cccgaatgcg ccgcacattg
      121 gcaccatgat ttgctggcac agatgcgctc agtccggctc acgttgctga tcggacaata
      181 tgcgcagcgg tttggactcg gcgcagcaaa cggtacgaca ttgaccgata ccctcctgcg
      241 gtggcgggac ttcggcccgc aggtgattcc attgcctcat ccgtcgccgc gcaacattgc
      301 gtggttcaag cgcaatccgt ggttcgaagc cgatgtattg ccgacgttgc gtgagcgtgt
      361 cgcgcgggcg ttgtctgctt ctgagtagtg gtgcgcggca aaaaaacgac gaaccctgct
      421 ccgtcataca aataaccgct gcccgccata gagatgcacc atgcaaaatg gccgttccag
      481 cttgcgctcg aacggccatt tctaatcacc ttagccgggt agttctaccc gtacccgcaa
      541 cttacatcgg cggcgcaacg ccatccttct caaccactac gcgcgaagcc gcaaactcgg
      601 tagcgctcac cggcgacgcc acaataaaca ccttcttgcc cgcgaccagg tccgtgcgtg
      661 cagccggcgc gaacgtcacc acaggcacac cgtccggcac cgtcaccgtg ttgctcccac
      721 ccttgtacga cagcttcaga tcacggccgc tcgtgcccgt gacaacctga tcgacgttcg
      781 cattcgtcat cgtgctgttc ggcgaaagat cccacgcata gtggccttca cccgtaccgc
      841 gtgctgcttc cgggaacacc accacttcgg tcgccgtcat cttgccgtcg gtacccgtgg
      901 tcgctgccgt gccgataaac gaacccggct tgatatcggc gagcttgatg ttcttcaccg
      961 cagtgaccgg cgtgtcctgc ttcatgtcga tcgtcacggt gtcgccgctg cgacgatgca
     1021 cggtcagtgt atcgccggac aacgagacga tatcgccacg aatacgcgag ggtttagccg
     1081 ccggtgcctg agcaaacgca acgctggcaa acgcgagcgc agcaaccgat acaccgagtt
     1141 tcaaacgcaa tgaggtggaa gacataacag acatggaggc tccagtttta gtatttgacg
     1201 cgagaaaaat tcaggcacca ccgaaccagt tgtaaccctg gttctcccag taaccgccgg
     1261 gatattcgtt cgtcacggta attgagacga tgtgcttcgg gttcttgtag ccgagcttcg
     1321 tcggcatgcg cagcttcatc gggaagccgt atttcggcgg caaaacttgt ccgtcgtacg
     1381 tcagcgccag gagcgtctgg gcatgcagcg cagtcggcat gtcgatgctg gttgaatagt
     1441 tatccgcgca gtgaaacgct acgtatttgg ccgtggtgtc ggcgccggat cgcttgagga
     1501 aatcggagaa acgcacgccg ccccacttgc cgatcgcact ccatccttca atgcagatat
     1561 gccgcgtcac ctggctttcc tgcggcaacg cgcgcagttc ttcaagcgtc cacacgttct
     1621 tgcccttcac caagccaccg accggcagct tgtaggtggc ggcatcgacg ataggtacat
     1681 cgtcgatgtc atagaacgcg ttgaacggga acggccgtgt gatcatcgac tcgggataag
     1741 tcggcgcgag cttgttcgga tcgaagagga acgcctgtgc atcgtcattg aaacgggaca
     1801 tggtccgcag cacggtgttc acggatttat cgtcggagat gttgcagccc gacagcatca
     1861 tgaggccgcc cagcgaaaga atacgcttgc cgaacagacg ccgcgcgggc gccttcagtt
     1921 cattgcgcgc atctttgagg atgttgtcga catcgagctt cgcgttcgcg gcaatcaatt
     1981 cgctctttct gttcagcatg gttcagcggc cccggatcat cagcaacaac gagcgtggaa
     2041 cgagcgcgac catcaccacg tgcaacacaa agaacgccac caggaaactc atcgcgaaga
     2101 agtggaccac gcgggcgttg tcataaccgc ccatcaggtc acgcagccac gggaactgca
     2161 ccgacttcca gaccgcaagg cccgacagga tgacgaccac gatgtcgacg atcaccgcaa
     2221 ggtacgctgc cttctgcacg gcgttgtagt gcgtgagatc gtcatgcttg agcttgccgg
     2281 tcagcgcggc gcacagatcg ccgaagaggc ttttcacgct gagcggaaac agcttgcggc
     2341 gaaaacgtcc
//
LOCUS       DATGBK010000112         2390 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_325331, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000112 DATGBK010000000
VERSION     DATGBK010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325331"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VKJ77_01640"
     CDS             complement(<1..215)
                     /locus_tag="VKJ77_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44006.1"
                     /translation="MKLLDGVDPSQLFGLPAPDIATLDDGLQVPFVQTGHEHQEVMLF
                     VHGSLCDFRYWKPQLGPLAKQYRCVAP"
     gene            complement(271..1329)
                     /locus_tag="VKJ77_01645"
     CDS             complement(271..1329)
                     /locus_tag="VKJ77_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein/thiosulfate
                     sulfurtransferase GlpE"
                     /protein_id="HMC44007.1"
                     /translation="MPHVPISVVSSWGAWAVFVSVLATQLGVPIPAAPMLVLAGTLVA
                     AGLASFWHMLAAAVIAVVIADSLWFAAGRLYGRRFLTSLVRFSLSLDTTLRTARHWFE
                     RFGVPLLALSKFVPGLGLVSSPLLGTTQIDVRVFVFWDLVGAGLWASAWILGGAILNA
                     EVAHLLVFVRTYGIDALDVLGMAAGAFLAYRWVRRLQFRRWLAKYRISPEQLDEMMRS
                     DAPPVIFDARPEEIRRKEAHRIKGAIPLDLASSRKIDEMFQEHEVVVYCVCPNEATAK
                     QIVRQLKAKGFRNVRPLKGGLDAWEKKGFPVEAIPLDSLRTAAGSLESASSSSSSLDD
                     DDDRSMGDMVTVRATAPE"
     gene            complement(1587..2264)
                     /locus_tag="VKJ77_01650"
     CDS             complement(1587..2264)
                     /locus_tag="VKJ77_01650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HMC44008.1"
                     /translation="MQQDLHGRVAYDLGTEILRGDFPPASTLPREAELMERFGVSRTV
                     QREALRTLTSKGLIESRPKIGTRVRPRQAWNLLDADVLEWYSRVAKPLQFAIKLQEMR
                     EMIEPYAAALAAANHDGDALARLGDAHRAMLDARNVDEWVRADLRFHLSVLNACSNEL
                     LVPLGTLIERTLEAQLRLNARRAEVFNASMAEHTAVFDAIVARDSAAARDAMGGLLGV
                     TRARIEG"
BASE COUNT          584 a          803 c          607 g          396 t
ORIGIN      
        1 ctgggcgcga cacatcgata ctgcttagca agcggcccta actgcggctt ccagtatcga
       61 aagtcacaaa gcgacccatg cacgaacagc atcacctctt gatgctcgtg gccggtttgt
      121 acaaagggaa cttgcaaacc atcgtcaagc gtggcgatat ccggcgctgg aaggccaaaa
      181 agttgcgagg gatccactcc atccaacagc ttcatccgat gcaactccga ttaacgaaat
      241 accgagaaaa acaaaagccc gcaaacaaac tcactccggc gccgtagccc gaacggtcac
      301 catatcgccc atgctccgat catcgtcatc atcgagcgaa gaggaagaag aagacgcaga
      361 ttccaacgac ccagcagccg tccgtaaaga atcaagagga atagcctcca ccggaaaccc
      421 cttcttctcc cacgcgtcca acccgccctt cagcggtcgc acattccgaa accccttcgc
      481 cttcaactgc cgcacgatct gcttcgctgt cgcttcattc ggacacacgc aatacaccac
      541 cacctcgtgt tcctgaaaca tctcatcgat tttccgtgac gacgccaaat ccagcggaat
      601 cgcgcctttg atccgatgcg cctccttcct cctgatctct tccggccggg catcgaaaat
      661 aacgggcggt gcatcggagc gcatcatttc atcgagttgt tcgggcgaga tccgatactt
      721 cgcgagccat cgacggaact gcaggcggcg cacccatcgg tacgccaaaa acgcgcctgc
      781 agccatcccg agcacatcga gcgcgtcgat cccatacgtc ctcacgaaca ccagcagatg
      841 cgccacttcg gcattcaaaa tcgcgccgcc gagtatccac gccgacgccc acaacccagc
      901 gcccaccaga tcccagaaca cgaaaacccg cacatcgatt tgcgtcgtcc cgagcaacgg
      961 cgacgacacc aatcccaatc ccggaacgaa tttagagagc gcaagcaaag gcacgccgaa
     1021 ccgctcgaac caatgtcggg cggtacgcaa agtggtatcg agggaaagtg agaaccgcac
     1081 gagcgaggtc aggaaacgcc ggccatacaa ccgcccggca gcaaaccaaa gcgaatcggc
     1141 gataaccact gcgatgaccg cggccgccaa catatgccag aacgaagcca gcccggccgc
     1201 gactaacgtg ccggccagca ccagcatggg tgcagcggga atggggacgc caagttgggt
     1261 ggcgagcacg ctgacgaaca cggcccacgc gccccacgac gacacaacgg aaatcgggac
     1321 gtgcggcaat tcgggctcct tgcggaaggt gcggagcgcc gcgtggtgaa ccacttctac
     1381 ctgatcgata tcaacaaaac ggcgcccggg cctgcaactt tatcgcgaat ctgaaaatat
     1441 cgccgaatgg acaaagcgtt taatgcgccc gcctggtctg caggtcgcct ccacgttacg
     1501 ccgaggaaac ggtcgtcgga ttgcgtgcgg aaggtgaatt ctccatgaat cgtcgctggg
     1561 tgcagatgcg tttgagaata cccgctctac ccctcaatcc gtgcccgcgt gaccccgagc
     1621 aagccaccca tcgcgtcacg cgccgccgcc gaatcccgcg cgacgatggc atcgaaaacg
     1681 gccgtatgtt ccgccatcga tgcgttgaaa acctccgccc gacgcgcatt cagccgcaac
     1741 tgcgcctcaa gcgtgcgctc gatcaacgtc ccgagcggca ccagcaactc attgctgcac
     1801 gcattcaaca cgctcaaatg aaaccgcaaa tcggcacgaa cccattcatc gacgttgcgg
     1861 gcatccagca tcgcccggtg cgcatcgccg aggcgcgcca acgcatcgcc atcatgattc
     1921 gcggcggcca acgcagcggc atacggctcg atcatctcgc gcatttcctg cagcttgatc
     1981 gcgaactgca acggcttggc gactcgtgaa taccactcga gaacatcggc atcgagaaga
     2041 ttccaagcct gccgcggccg cacacgcgtc ccaatcttcg gccgcgactc aatcaatccc
     2101 ttcgatgtca gcgtccgcaa cgcctcgcgc tgcacggtcc ggctgacgcc aaaacgctcc
     2161 atcagctcgg cttcgcgcgg caacgtagaa gcaggcggga aatcgccgcg caaaatctcg
     2221 gtgccaaggt cgtacgccac gcgtccatgc agatcttgct ggatatcctt cccctttcct
     2281 aaggttgtcg ctaagcaatc aataccacgc gattatacgg accctttccc gacaagggtc
     2341 cgtataatcg cgtggtattg attgcttagc gacaacctta ggaaagggga
//
LOCUS       DATGBK010000113         1562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_163350, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000113 DATGBK010000000
VERSION     DATGBK010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163350"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1144
                     /locus_tag="VKJ77_01655"
     CDS             <1..1144
                     /locus_tag="VKJ77_01655"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF012306.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HMC44009.1"
                     /translation="NAYVVEVNAPTGRHEWLFIEKRTGVIVRRERVERRRRYTTTYDD
                     FKQFDGTLEPSHMRTLDSLGNDREQTIVSRSLDTTPDPKDVAMPASRRTLVEFPAGAS
                     VVQLPVRVANGLFVVRVLMGGKSYDFLLDSGAAGIVIDPSVAEALGLERFGQRQGATL
                     GQFSEETAVVPLMTVGQVHMRNVVTRVVPVPFHADDRTRIVGLLGFDFFADTVVHIDH
                     EHNIVDVHQPATFHPPAEVTAVPLALDDKQPAIRAKVGSVVARVILDTGANRTVLQST
                     FAERADINSDKVAMAKFRGVGGIGTAATVRVKSFEFAGSTFTDPLIDISAAELGVEDV
                     DGVLGTDLLHDYDVYFDYRTNTAYLHRVKRTTAAAASREQTLRDRN"
     gene            complement(1141..>1562)
                     /locus_tag="VKJ77_01660"
     CDS             complement(1141..>1562)
                     /locus_tag="VKJ77_01660"
                     /inference="COORDINATES: protein motif:HMM:NF044374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4438 domain-containing protein"
                     /protein_id="HMC44010.1"
                     /translation="VRVFNCDPDFLDKMDVKWRNAALQVPVAKIVPSAIMGSGLGRST
                     VTRGDYDIQSFDEETITKYGLHELRFGDIVAIEDADHSYGRIYRKGAISIGIVAHGAS
                     NIAGHGPGVTSLLTSRSGAIVPHLDKDANIATILKLR"
BASE COUNT          305 a          493 c          457 g          307 t
ORIGIN      
        1 gaacgcctac gtcgttgagg taaacgcgcc caccggccgc cacgaatggc tcttcatcga
       61 gaagcgcacc ggcgttatcg tgcgccgcga acgcgtcgag cggcgccgcc gctatacgac
      121 gacctacgac gatttcaagc agtttgacgg cacgctggaa ccgtcgcaca tgcgcaccct
      181 ggattcattg ggcaacgatc gcgagcaaac gatcgtctcg cgttcgcttg atacaacgcc
      241 cgatccgaaa gacgtcgcga tgccggccag ccgtcgcacg ctcgtcgagt ttccggccgg
      301 tgcaagcgtc gtacaactac cggtgcgcgt ggcaaacggc ttgttcgtcg tacgcgtgtt
      361 gatgggcggc aagagctacg attttctgct cgattccggt gccgcgggaa tcgtcatcga
      421 tcccagtgtc gccgaagcgc tcggtttgga gcgcttcggt caacgccagg gtgcgacact
      481 gggccagttc tccgaagaaa ctgcggtcgt tccgttgatg acggtcggac aagtacacat
      541 gcgtaatgtc gtgacgcgcg tcgtccccgt gccgtttcat gccgacgatc gcacgcgtat
      601 cgtgggcctg ctcggcttcg atttcttcgc cgacacggtc gtccatatcg accacgaaca
      661 caacatcgtc gacgttcacc agcccgcgac gtttcatccg ccggcggagg tcacggctgt
      721 gccgctcgcg cttgacgaca agcagcccgc gattcgcgcg aaagtcggct cggtcgttgc
      781 gcgcgtcatt ctcgacaccg gcgcgaatcg tacggtgctg cagtccacgt tcgccgaacg
      841 cgccgacatc aatagcgaca aggtcgcaat ggcaaaattc cgcggcgtcg gcggtatcgg
      901 tacggcagcg accgtccgag taaagagctt tgaattcgcc ggttcgacat ttaccgaccc
      961 gctgatcgat atctcggcgg cggaacttgg cgttgaagat gtcgacggcg ttctcgggac
     1021 cgacctctta cacgattacg acgtgtactt cgactaccgc acaaacacgg cgtatctgca
     1081 tcgcgtcaag cgcacgacgg ccgccgcggc atcccgcgaa caaaccctgc gcgatcggaa
     1141 ctagcgcagc ttcagaatcg tcgcgatgtt cgcatcttta tcgagatgcg gcacgatcgc
     1201 gcccgaccgt gacgtgagca ggcttgttac gcccgggccg tggccggcaa tattcgaggc
     1261 gccgtgcgcg acgatgccga tgctgatcgc gcctttgcgg tagatacggc cgtacgaatg
     1321 atcggcgtct tcgatagcaa ctatgtcacc gaagcgcaat tcgtggagac cgtatttcgt
     1381 aatggtttcc tcatcgaacg actggatgtc gtaatcgccg cgcgtgaccg tcgaccgccc
     1441 cagacccgag cccatgatcg cggacggcac gattttcgcg acgggtacct gcagtgccgc
     1501 attgcgccac ttcacatcca tcttgtcgag aaaatccgga tcgcaattaa acacccgaac
     1561 gt
//
LOCUS       DATGBK010000114         1674 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_232659, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000114 DATGBK010000000
VERSION     DATGBK010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232659"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..577)
                     /locus_tag="VKJ77_01665"
     CDS             complement(98..577)
                     /locus_tag="VKJ77_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HMC44011.1"
                     /translation="MQLYEIGQSVAKRRAELDLTQAQLAKLSGLSRFTVNQLETGKVK
                     DLGINKLIPLLSVLGIELTANPRPDQKGLFKASVSANVSYKGKLTEAQLAHALATGKI
                     PPGYESQVSVILDEVPVPVVVKAVEEAARSSGVAPKKIWKNLATWSKDLHIYRRVWE"
     gene            complement(975..>1674)
                     /locus_tag="VKJ77_01670"
     CDS             complement(975..>1674)
                     /locus_tag="VKJ77_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HMC44012.1"
                     /translation="RGVDFGLNDWATFDDGETIANPRFVRNEMPRMADLQRQQARKTR
                     GSIRSKRLGKQVAKVHEQIGNLRREFLHKTTMRMVKSCAVIATEELRVNNMSRSAAGT
                     QDKPGRMVKPKAGLNREILSAGLSMAHNMLAYKAVEAGTRLHVSNTRQLKPSQRCATC
                     WGIVPKTLAQRMHVCTHCGHTAQRDQNAASVVLIDAHTPGTGVAARPKPLARRRAKSK
                     SETRETPATASQDA"
BASE COUNT          311 a          537 c          467 g          359 t
ORIGIN      
        1 cggccgtgtt cggcaatttc atcgatgagc gtaagcgcat gggcaagcag actctgccac
       61 ggcccgtccg gtagcgaatg aggcgaatga attgtcgtca ctcccacacc cgccggtaga
      121 tatgcaggtc tttagaccac gtcgcgaggt ttttccagat cttcttgggc gcgacgccag
      181 acgatctggc cgcctcttca acagctttga caacaacggg cacaggtacc tcgtcaagaa
      241 tgacggaaac ctgcgactcg tagccaggcg ggatctttcc cgttgcaagg gcgtgagcga
      301 gctgcgcttc ggtcagcttt cccttgtagc tcacgttggc gctcacggat gccttgaata
      361 gccccttctg atcgggcctc ggattggccg tcagttcgat cccgagtacg ctgagaagtg
      421 gaataagttt gttgatcccc agatccttca ccttgccggt ttcgagctgg ttgaccgtaa
      481 accgggagag cccgctaagc ttcgcgagtt gtgcctgcgt caggtcgagc tccgcccgcc
      541 gtttcgcgac tgactgacca atctcgtaga gttgcatgac tactcctgcg gcggaacgga
      601 aaaatgcgac acctaatatg taaagtatat cctacatatt tacggacgta tttccggcgc
      661 aacagcaagt cgatctccca attccgcagc acacggaggc cgccctcacc ccaccctacg
      721 agccgccggc aaatccaagt actcaccggc ttcacgccat caccgcaacg cggacacgcg
      781 gggtcccgca acagccgcaa tcgattaaaa cgcattccca gcgcgttgaa ccgcagcaag
      841 gtaccggaca gcgactcacc gatacccagg atcagcttga tcgcctcggt cgcctgcaac
      901 aacccgatca cccgtgcagc acgccgcgca cacccgcttc ggtgcagtta ggcgcaaaat
      961 gaactctccc accgctaagc gtcttgtgac gctgtagcgg gggtttcgcg ggtctcagac
     1021 tttgacttgg cgcgtcgccg cgccagcggt ttcggtctcg ccgccacgcc cgttccaggc
     1081 gtgtgcgcat cgatcaggac gaccgacgct gcgttttggt cgcgttgtgc cgtgtgtccg
     1141 cagtgcgtgc acacgtgcat gcgttgcgca agcgtcttgg gcacgatccc ccaacacgtg
     1201 gcgcagcgct gcgacggttt taattgacgc gtgtttgaaa cgtgcagtcg cgtaccagct
     1261 tctaccgctt tgtacgcgag catgttatgc gccatgctca atccggccga cagaatctct
     1321 cgatttaatc cggcctttgg cttgaccatc cgcccgggct tgtcctgcgt gccggcggcc
     1381 gaccggctca tgttgttcac gcgcagttct tccgtcgcga tgacggcgca cgacttcacc
     1441 atgcgcatcg tcgtcttgtg gaggaactcg cggcgcaagt ttccgatctg ctcgtgcacc
     1501 ttcgcgactt gcttgccaag ccgcttagat cgaatggatc cgcgtgtctt gcgcgcctgc
     1561 tgccgctgca gatccgccat gcgcggcatc tcgttgcgca cgaatcgcgg attggcgatc
     1621 gtctcgccgt cgtcgaacgt ggcccagtcg ttcagaccga agtcgacgcc tcga
//
LOCUS       DATGBK010000115         2044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_94174, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000115 DATGBK010000000
VERSION     DATGBK010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94174"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VKJ77_01675"
     CDS             <1..192
                     /locus_tag="VKJ77_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011296542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HMC44013.1"
                     /translation="VLGLPISKVTIQVAAGRNLAVLVEAAVRNTILQLRGIDTLRDFM
                     DRQRLAMQDPESQFPGKLI"
     gene            290..1186
                     /gene="rapZ"
                     /locus_tag="VKJ77_01680"
     CDS             290..1186
                     /gene="rapZ"
                     /locus_tag="VKJ77_01680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HMC44014.1"
                     /translation="MRIILITGISGSGKSVALNALEDAGYYCVDNLPPRFLPELAAYL
                     NSQGQPRLAVAIDARSSRSLDEVPAIIKDLSQAFDLRVLFLNASTQSLIQRFSETRRR
                     HPLSGSPGHDADVGLLTSLGEAIERERELVSGLAEFGHQIDTSNLRANVLRAWVKSFI
                     EQETAGLTLMFESFGFKRGVPLDADFVFDVRTLPNPYYDHELRPLTGLDKPVIDFLSA
                     QPMVHQMIDDVGTFIAKWLPQFRDDNRSYLTVAIGCTGGQHRSVFIAQALAARFGDKA
                     NVIVRHRDAPIALDGHVASLQT"
     gene            1221..1853
                     /locus_tag="VKJ77_01685"
     CDS             1221..1853
                     /locus_tag="VKJ77_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HMC44015.1"
                     /translation="MSTNPLLADLPLFPLHTVLFPGGHLPLKIFEARYLDMARACLRE
                     GTPFGVCLLKSGNEIASPGAPSVPESIGCLAEITQCDVDTFGMLLVQARGTTRFRLLS
                     HRVGPSNLLVGVAETIGDDTPMDDAQALIKFGACAEVLERIIDAIKAREPKDLPFAEP
                     FLLDDPTWVSNRLSEILPIPMRARQKLMELEDAAARIDVVHHYMQQHQLL"
     gene            complement(1876..>2044)
                     /locus_tag="VKJ77_01690"
     CDS             complement(1876..>2044)
                     /locus_tag="VKJ77_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009972864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HMC44016.1"
                     /translation="FTHFKLDIEPRLGQANGVPDAADNRTVWAPLANIDAYGVPAPVR
                     KLLDALQGSLI"
BASE COUNT          379 a          640 c          609 g          416 t
ORIGIN      
        1 gtgctcggcc tgccgatcag caaggtcact atccaggtgg cggccggccg gaacctggct
       61 gtgctggtcg aagctgcggt gcgcaacacg atcctgcaat tgcggggtat cgataccttg
      121 cgcgacttca tggaccgtca acgccttgcg atgcaggacc ccgagagcca gttccccggc
      181 aagctgatct gacgagctaa gcaggcaaga ccggcggcat tgagcaccct gccgccgccc
      241 ggacccgaat ttttgcgtgc ttttacatcg agcgaacgag tccttattca tgcgcattat
      301 tctgattacg ggtatttccg gctccggcaa atcggttgcc ctgaacgcgc tcgaagacgc
      361 cggctactat tgcgtcgaca acctgccgcc gcgcttcctg ccggaactcg ctgcgtacct
      421 caacagtcag gggcagccgc gtctggctgt tgctatcgat gcacgctcga gccgctcgct
      481 cgacgaagtg cccgccatca tcaaagacct gtcgcaagcg ttcgacctgc gcgtgctgtt
      541 tctcaacgcc agtacgcagt cgctgatcca gcgcttttcc gagacccgcc gccggcatcc
      601 gttgtcgggt tcgccgggtc acgacgccga cgtcgggctg ctcacctcgc tcggcgaagc
      661 gatcgaacgt gaacgcgagc ttgtctcggg actcgccgaa ttcggccatc agatcgacac
      721 cagcaatctg cgggcgaacg tattgcgcgc gtgggtgaag agtttcatcg agcaggaaac
      781 ggccgggctg acgctgatgt tcgagtcgtt cggattcaag cgcggcgtgc cgctcgacgc
      841 cgattttgtc ttcgatgtcc gcacgctccc gaatccctat tacgaccacg aactgcggcc
      901 gctgacgggg ctggacaagc cggttatcga ctttttgtcc gcccagccga tggtccacca
      961 gatgattgat gacgtgggca cgttcatcgc caaatggcta ccgcaatttc gtgacgataa
     1021 ccgtagttat ctgacagtgg cgatcggctg cacgggtggc cagcatcgtt cggtattcat
     1081 cgcccaggcg ctcgccgcgc gcttcggtga caaggccaat gtgattgtgc ggcatcgcga
     1141 cgcacccatc gctctggatg gacacgtcgc gtccttgcaa acctgatcgc cttcgggcgg
     1201 ccttttaaaa gaagcgcgcg atgtccacta atcccctgct cgccgacctg ccgctgtttc
     1261 cgctgcacac cgtgttgttt ccgggcggcc atctccccct gaaaatcttc gaagcccgct
     1321 atctggacat ggcgcgtgcg tgtttgcgcg aaggcacgcc gttcggcgtg tgcctgttga
     1381 aaagcggtaa tgagattgcg tcgcccgggg caccgtcggt gcctgaaagc attggctgcc
     1441 tggccgaaat cacgcaatgc gacgtggaca cgttcggcat gctgctggtc caggcacgcg
     1501 gcacgacacg ctttcggctg ttgtcgcatc gtgtggggcc gagcaatttg ctcgtgggcg
     1561 tagcggaaac cattggtgac gacacgccga tggacgacgc gcaagcgtta ataaagtttg
     1621 gcgcgtgcgc ggaggtgctg gaacggatca tcgatgcaat caaggcgcgc gagccgaagg
     1681 atctaccgtt cgccgagccc ttccttctcg acgatccaac gtgggtatcc aaccggttat
     1741 ccgaaatcct gccgatcccc atgcgcgccc ggcaaaagct gatggagctt gaggacgcgg
     1801 ccgcgcgaat cgatgtcgtg catcactata tgcagcagca tcaactgctt tgaagccgct
     1861 tggcagcccc tgatatcaaa tcagcgaacc ctgcagcgcg tcgagcagtt tgcgcactgg
     1921 cgcaggcacc ccgtacgcat cgatattcgc aagcggcgcc cacacggtcc ggttatcggc
     1981 agcgtcgggc acgccgttcg cctgcccaag acgcggctcg atatccagtt tgaaatgcgt
     2041 gaac
//
LOCUS       DATGBK010000116         1730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1503, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000116 DATGBK010000000
VERSION     DATGBK010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1503"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..962)
                     /locus_tag="VKJ77_01695"
     CDS             complement(<1..962)
                     /locus_tag="VKJ77_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005615 - extracellular space [Evidence
                     IEA];
                     GO_function: GO:0047989 - hydroxybutyrate-dimer hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019605 - butyrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate oligomer hydrolase family
                     protein"
                     /protein_id="HMC44017.1"
                     /translation="MKRFPGATALALAMAAFGLAACHGNDDGNGNGNGSQNNALPNFI
                     SGSVRTQTYDGTTDDLLTAGLGKDGLASATPPAIANAAAPSAAELRRLAIYSNYRALV
                     DMSANGGYGRFWGPNVDLNGNDTLGEGMVAGKEYLAFADDGSGTLNVSLLVQIPASFN
                     PDQPCIVTATSSGSRGVYGAISAAGEWGLKRGCAVAYTDKGSGNGAHELASNTITLID
                     GTLLNAAAAGKNSVFTANLGSTNLAAFNAQFPNRYAFKHAHSRQNPEKNWGTNTLQAI
                     QFAYWALNDTYGSLNGTTRQIRYKRGDVTTIAASVSNGGGASLAA"
     gene            complement(1178..1537)
                     /locus_tag="VKJ77_01700"
     CDS             complement(1178..1537)
                     /locus_tag="VKJ77_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HMC44018.1"
                     /translation="MKVVDMLKALSVVVCVAVASSAYAQSSDATAATDAAPSAKTTKK
                     VNRKLGLDVRRALSKAQGIDVSNIFVRARGGAVVLTGTVPDGAQIPKAEEVAKGVAGV
                     TSVSNKLTLAQPNGGGG"
BASE COUNT          307 a          566 c          501 g          356 t
ORIGIN      
        1 gccgcgagcg acgcgccgcc gccattgctc accgacgccg cgatggtcgt cacatccccg
       61 cgtttatagc ggatctggcg cgtggtgccg ttgagcgagc cgtaggtatc gttgagcgcc
      121 cagtaggcga actggatcgc ctgcagtgta ttcgtgcccc agtttttctc cggattctgc
      181 cgcgagtggg cgtgcttgaa cgcgtagcga ttcgggaatt gcgcgttgaa cgcggcgaga
      241 ttggtgctcc cgaggttcgc cgtgaatacg ctgttcttgc cggcagcggc cgcattcagc
      301 aacgtgccgt cgataagcgt aatcgtgttc gacgccagtt cgtgcgcgcc gttgccgctg
      361 cctttatcgg tgtaagcgac cgcgcagccg cgtttcaaac cccattcccc cgccgccgat
      421 atcgccccgt acacgcctcg cgacccggac gaagtggccg tgacaatgca cggctggtcg
      481 gggttgaaac tcgccggaat ctgcacgagc aaactcacat tgagcgtgcc gctgccgtcg
      541 tcggcgaaag ccagatactc cttgccggcg accatgccct cgccgagcgt gtcgttgccg
      601 ttcaagtcga cgttcggccc ccagaagcgc ccgtagcccc cattggcgga catgtcgacg
      661 agcgcgcggt agttcgagta gatcgcaagg cgacgcaatt cagcggcgct cggcgcggct
      721 gcgttggcaa tggccggggg cgttgccgat gccagcccgt ccttgcccag ccccgctgtc
      781 agcaggtcat cggtcgtgcc gtcgtaggtt tgcgtgcgca cgctgccgga gatgaagttc
      841 ggcagcgcat tgttctgcga accgttgcca ttgccattgc cgtcatcgtt gccgtgacag
      901 gccgcgagac cgaacgccgc cattgccaag gcaagcgccg tagctcctgg aaatcgtttc
      961 atcgtctctc tccagcacgt tgttcttatt cgtcgtactt ctttcgacgc acgtcgcgaa
     1021 cttggcgcct gctctcaacc aggaagtctg atctcataac gcataacggg ttccggtgcg
     1081 aagcaccgga acccgttatt aaaccactgg acgaaaccgc gtcgcgcgct gcaaacccgc
     1141 tgcaacgacg cgccgcagtc cacggctcag ggaagtatca gcctccacca ccattcggct
     1201 gagccagcgt aagcttgttc gacacagagg tcacgccagc cacgcctttc gccacttcct
     1261 cggccttcgg aatctgcgcg ccgtccggca ccgtacccgt cagcacgact gcaccgccgc
     1321 gtgcgcgcac gaagatgttc gacacgtcga tgccttgtgc cttactcaag gcacgccgca
     1381 catcaaggcc gagcttgcgg ttgaccttct tggtggtctt ggccgacggt gctgcgtccg
     1441 tcgcggccgt ggcatcactt gattgagcat aggcgctcga cgctactgcg acgcacacca
     1501 cgacgctcag cgccttcaac atatcgacta ctttcatgac ttctcctttt gtttcgcttt
     1561 ggacttcgca aagtgttgct cttgtacttc tttggaccgc atcaacccag cggcttgcta
     1621 cgacatcttg cggtctgtgc accaacgacg acccgacgat cgacgcgcat acgacacaaa
     1681 cagaccggcg atgctggcga cacggtgttg cgagagactg gcgaaaaaaa
//
LOCUS       DATGBK010000117         2397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_232711, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000117 DATGBK010000000
VERSION     DATGBK010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232711"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..648)
                     /locus_tag="VKJ77_01705"
     CDS             complement(<1..648)
                     /locus_tag="VKJ77_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44019.1"
                     /translation="MADVTTPAASSPAAPAPEAERASAADWLAVAAGSLGALMATLDI
                     SITNSALPQIQGEIGATGTEGTWISTGYLMSEIVMIPLAAWLTRVFGLRNFLLANATL
                     FIAFSMMCGWSHSLPMMIAGRIGQGFAGGAMIPTAQTIIRTRLPRSQMPVGMTMFGLI
                     VLLGPLLGPVLGGWLAENISWSWCFFINLPVCIALITLLIVGLPADRPQWGTFFKA"
     gene            complement(641..1699)
                     /locus_tag="VKJ77_01710"
     CDS             complement(641..1699)
                     /locus_tag="VKJ77_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HMC44020.1"
                     /translation="MILVVLGIIALIVAGIWLARWWTVGRFIESTDDAYLQADSVTVA
                     PKVSGYVTDVYVGDNATVKAGDPLVRLDTRQYQVALDQAQATIAARAADIQRAQADIL
                     QQHANIEQAKAQQQVVRVSAQHARDEVQRYAPLAATGAETSERLSELTSTRDQAVATL
                     AANTAAVDAAETQIAATTAQIAQAHAQLEAAEASARQAHLDLQDTVVRSVLAGKVGDR
                     SVRVGQYVQPGTRMLSVVPVQSTYLTANFKETQVGHMRVGQPVILHVDALPGTDLHGV
                     VDSFAPGTGAQFALLPPENATGNFTKIVQRIPVRIRIETGPETRSVLLPGLSVTADVD
                     TRSSREGDQRIKAENDHG"
     gene            1873..>2397
                     /locus_tag="VKJ77_01715"
     CDS             1873..>2397
                     /locus_tag="VKJ77_01715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CerR family C-terminal domain-containing
                     protein"
                     /protein_id="HMC44021.1"
                     /translation="MNDTKRLRRPSAGGYVRGDETRLRIIEAAIESFGEHGFEGASTR
                     DIAARAGVNAPALQYYFENKEGVYRACAEYLADSSWVTLEPVVTHAADVLSKDSEIPV
                     LIDAFIRIQEAIADRMFAKACDTSNQRLFFTREQAGHEPSIASEIMMRRVRQPLNDVG
                     SRLIARITGTKPDDE"
BASE COUNT          446 a          706 c          785 g          460 t
ORIGIN      
        1 cgccttgaaa aacgtgcccc attgcggcct gtccgcaggc agtccgacga tcaacaaggt
       61 gatcagcgcg atacatacgg gcaggttgat aaagaagcac cagctccagc tgatgttctc
      121 tgccagccat ccaccgagca cgggccccag cagcggaccg agcaacacga tcaagccgaa
      181 catcgtcatg ccgacgggca tctgtgagcg cggtaaccgg gtgcgaatga tggtctgcgc
      241 cgtcgggatc atggcgcccc ccgcgaagcc ctggccaatg cgtccggcga tcatcatcgg
      301 caagctgtgc gaccatccgc acatcatgga gaacgcaatg aacagcgtgg cattggcgag
      361 caggaagtta cgcaagccga acacgcgcgt gagccatgcc gcgagcggga tcatcacgat
      421 ctcggacatc aggtagccgg tcgagatcca cgtaccctcg gtgccggttg cgccaatctc
      481 tccctggatc tgcggcaagg ccgagttggt gatcgagata tccagcgtgg ccatcagcgc
      541 gcccagcgag ccggccgcaa ctgcgagcca gtccgccgcg ctcgcgcgct ccgcttccgg
      601 tgcaggcgcc gcaggcgagg aagcggctgg cgtggttaca tcagccatgg tcgttctcgg
      661 ccttgatgcg ctggtcgccc tcgcgggagg agcgggtatc gacatcggcg gtcaccgaca
      721 ggccgggcag cagcacgctg cgtgtctccg gccctgtctc gatgcgaatg cgcacgggaa
      781 ttcgctggac gatcttggtg aaattgcccg tagcgttttc cggcggcagc agcgcgaact
      841 gggcaccggt gccgggagca aagctgtcca ccacgccgtg caggtcggtg cccggcagcg
      901 catccacgtg caggatcacg ggctggccga cgcgcatgtg gccgacctgc gtttccttga
      961 agttggcagt cagataggtg ctttgcaccg gaaccacgga cagcatccgc gtgcccggtt
     1021 gcacgtactg accgacgcga acggagcggt cgccaacctt gccggccagt acgctgcgca
     1081 cgacggtgtc ctgcaggtcg aggtgcgctt gccgcgcgct ggcctctgct gcctcgagtt
     1141 gcgcatgggc ctgggcgatc tgcgcggtgg tggcggcgat ctgtgtttcg gcggcatcga
     1201 ctgcggcggt gttcgctgcc agcgttgcca ctgcctgatc gcgtgtgctg gtcaactcag
     1261 acagccgttc gctggtttca gcgccggtgg cggcgagcgg cgcgtagcgc tggacttcgt
     1321 cgcgggcatg ctgggcgctc acccgtacga cttgctgctg cgctttggcc tgttcaatgt
     1381 tggcgtgctg ctggaggatg tcagcttgcg cgcgctggat gtccgcggca cgtgcagcga
     1441 tggtcgcctg tgcctggtcg agcgcgacct ggtactggcg ggtatcgagc cggaccagtg
     1501 ggtcgccggc cttgaccgtg gcgttgtcac ctacgtagac atcggtcacg tagccgctga
     1561 ccttgggcgc aaccgtgaca ctgtcggctt gcaaataggc gtcgtcagtg ctttcaataa
     1621 agcgccccac tgtccaccag cgggcaagcc agattcccgc aacgatgagc gcaataatcc
     1681 caagcaccac caggatcatg cgttttccag atcgccgcgt gggcgaagcg gcggaatctt
     1741 gcggtacttc gtgcggaggc gccccggcgg ttgttgacat ctttgatcca aattattcca
     1801 atcggaacaa ttattccagt tggtaaaatt gtgtcaagtg atatatttgt ttagttgaag
     1861 ggagaggcac gaatgaacga cacaaaacgg ctacgccgtc cgtcggccgg cggatatgtg
     1921 cgaggcgacg agacaaggct gcgaatcatc gaagcagcga tcgagtcatt tggagagcat
     1981 ggtttcgagg gcgcgtccac gcgtgacatc gccgcgcgcg ccggggtcaa tgcacccgcg
     2041 ctgcagtatt acttcgagaa taaagagggg gtgtatcggg cttgcgcgga atatctcgcc
     2101 gactcgtcct gggtcacgct tgagccggtg gtgacgcacg cagccgatgt gttgagcaag
     2161 gacagtgaaa ttccggtgct gatcgatgct ttcattcgca ttcaggaagc aattgcggac
     2221 cggatgttcg cgaaggcttg cgatacgtct aaccagcggc ttttctttac gcgtgaacag
     2281 gcaggccatg agccgagcat tgcctcagag atcatgatga ggcgcgtgcg gcagcccttg
     2341 aacgatgttg gctcaaggtt gattgcgcgc attactggta cgaaacccga cgatgag
//
LOCUS       DATGBK010000118         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_24711, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000118 DATGBK010000000
VERSION     DATGBK010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24711"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..926)
                     /locus_tag="VKJ77_01720"
     CDS             complement(<1..926)
                     /locus_tag="VKJ77_01720"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HMC44022.1"
                     /translation="MSNKLSEVQARMNGVHGLESVVGAMRGIAAARSREARSRLDGIR
                     ACARIVSAAIGDALLLIDDHTSHETAAPDRDAKQDAAVVIVLCAEQGFVGTFNEHVID
                     AALASATAHAQSSSTEYLLLGDRGIVAATERGLNIGWSAPMITHADEVPALADRLTGV
                     LFQRLIAGQTTRVSVIHATPNPTATVQIVEQILLPFDYGRFSVTSSVTTSATSPATAR
                     RNPPLINLPPQRLLSQLAEEYIFAQLCEAIMLSFAAENEARMRAMIAARTNVHDKLEA
                     LTGDFRRLRQEEITSEIVELSAGSIAADRPSK"
     gene            complement(923..>1518)
                     /locus_tag="VKJ77_01725"
     CDS             complement(923..>1518)
                     /locus_tag="VKJ77_01725"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774101.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The alpha chain is a
                     catalytic subunit; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HMC44023.1"
                     /translation="GNLSAYIPTNLISITDGQIMLDAALFAANQRPAVDVGLSVSRVG
                     GKAQLPALRKVSGRLRLDYSQFLELEMFTRFGGAMEPRVKTQVVRGERIRALITQPRF
                     APLRPVDEIALLAALADGVFDAEPVSCIATVRTRLAGHLDAHGGPAASAALVATGTLD
                     EAALTGLVAAVRDLAVQISAAPAAEVKQETKPEATST"
BASE COUNT          273 a          476 c          475 g          294 t
ORIGIN      
        1 tttttcgaag gtctgtcggc ggcgatgctt cctgcggaaa gctccacgat ctccgacgtg
       61 atctcctctt gcctcagccg gcgaaagtcg ccggtcaatg cttcgagctt gtcatgcacg
      121 ttcgtgcgtg cagcgatcat cgccctcatg cgggcttcgt tttctgcggc gaacgacagc
      181 atgatggcct cgcaaagctg cgcgaagatg tattcctccg caagctgcga taacaggcgc
      241 tgcggtggga gattgatgag cggcggattg cggcgcgcgg tcgcgggcga cgtagccgat
      301 gtcgttaccg atgacgttac cgagaagcgc ccatagtcga acggtagcag gatctgctcc
      361 acgatctgga cggtggccgt cgggttcggc gttgcgtgga tcacgctcac gcgagtcgtt
      421 tgcccggcga tcaggcgctg gaacaaaacg ccggtgaggc gatcggcgag tgcaggcact
      481 tcgtcggcgt gggtgatcat gggcgccgac caaccgatat tcagcccgcg ttccgtcgcc
      541 gccacgatgc cgcggtcgcc gagcaacagg tattccgtcg atgaagactg agcgtgagcg
      601 gtagccgatg ccagcgctgc atcgatcaca tgctcgttga acgtgccgac aaacccctgt
      661 tccgcgcaca ggacgattac gacggccgca tcctgttttg catcccgatc cggggccgcg
      721 gtttcgtgcg aggtgtgatc gtcgatcagt agcagcgcgt cgccaatcgc cgcgctgact
      781 atccgagcgc aggcccgaat gccatccaga cggctgcgcg cttcacgcga gcgggctgca
      841 gcgataccac gcattgcacc gaccacggat tcaagcccgt gtacgccatt catgcgcgcc
      901 tgtacttcgc tgagtttgtt gctcatgtcg aagtggcctc gggcttggtt tcctgcttga
      961 cctctgccgc aggcgccgcg cttatttgta ctgcaagatc gcgtacggcc gctaccaggc
     1021 cggtcagcgc ggcttcatct agcgtccctg tggcaacgag cgcagcgctc gccgcagggc
     1081 cgccgtgcgc atccaaatgt cctgcaagac gggtgcgaac cgtcgcaata cagctgaccg
     1141 gctccgcgtc aaacacgccg tcagcgagcg cagccagcag cgcgatttca tcgacggggc
     1201 gcagtggcgc aaatcgcggc tgcgtgatca atgcgcgaat gcgctcgccg cggaccactt
     1261 gcgttttgac tcttggctcc atcgccccac caaaacgcgt gaacatttca agctcaagga
     1321 actgcgaata atctaacctc aggcgcccgg acaccttgcg cagtgcgggc aattgcgcct
     1381 tgccgcccac ccggctcacg ctcaggccga cgtccacggc ggggcgctgg ttggcggcga
     1441 acagcgcggc gtcgagcatg atctgcccat cggtaatcga gatcaggttg gtcggaatgt
     1501 aagcggataa attgcctg
//
LOCUS       DATGBK010000119         2096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_325463, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000119 DATGBK010000000
VERSION     DATGBK010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325463"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..323)
                     /locus_tag="VKJ77_01730"
     CDS             complement(<1..323)
                     /locus_tag="VKJ77_01730"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC44024.1"
                     /translation="MQFVEAHGARIPQIGLGTMTLKEDVCVQAVKTALQVGYTNLDTA
                     AFYGNEKEVGEGLRASGVKREGVFICTKVRENNLLPENFNKSLDQSLVNLQLPFVDLL
                     LIHWN"
     gene            550..879
                     /locus_tag="VKJ77_01735"
     CDS             550..879
                     /locus_tag="VKJ77_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011803215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HMC44025.1"
                     /translation="MRNLFAILVVFGLVSFAPHAARADDYKLTIKDHKFTPEEIKVPA
                     NRRVAITVINEDTTAEEFDSTALKVEKVIAGKSQGVVRIGPLKPGRYPFIGEFHEATA
                     KGVVIAE"
     gene            883..1704
                     /locus_tag="VKJ77_01740"
     CDS             883..1704
                     /locus_tag="VKJ77_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006488051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HMC44026.1"
                     /translation="MLGALIIVFREVIEAGLIVGIVMAATRGVAGRGRWISIGIGSGV
                     LGAAIVALFAGAISQMFAGVGQELFNATVLGVAVVMLMWHNAWMARHGREIAAEMKSI
                     GTAVSEGAKPLTALAIVVGLAVLREGSEVVLFLYGIFASGTSGSALLLGGVLGIAGGA
                     AFTALTYFGLLAIPNRYIFSVTSWLIALLAAGMAAQSVQFLNNAGFAEILGRTVWDTS
                     WILSEGSLFGKLLHTLIGYTERPTELQLMVYIATLFAMFLLMRFSRYSPGKTVTA"
     gene            complement(1701..1988)
                     /locus_tag="VKJ77_01745"
     CDS             complement(1701..1988)
                     /locus_tag="VKJ77_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019429464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC44027.1"
                     /translation="MMRVRLKADGRIVEIMPDGTERTVDHSDPASFVRQVRARCGLTQ
                     AAFAEKIEVPIETVRNWEQGKRSPRGPARALLKLIDSAPDAAFAALGGRRR"
BASE COUNT          394 a          607 c          658 g          437 t
ORIGIN      
        1 ttgttccaat ggatcagcag cagatcgaca aagggcaact gcagattgac gaggctctgg
       61 tcgagcgact tgttgaaatt ctccggcagc agattgttct cgcgcacctt ggtgcagatg
      121 aacacgccct cgcgcttgac gccggaagcg cgcaggccct cgccgacttc cttctcattg
      181 ccgtagaacg cagccgtgtc gagattggtg tagccgacct gcaaggcggt cttgaccgcc
      241 tgcacgcaga catcctcctt cagggtcatg gtgccgagac cgatttgggg aatacgggcg
      301 ccatgggctt cgacaaattg catcacaatc tcctggaagg gcggacgaaa tggggctggt
      361 gggcgggtag ttggcggcag aatgcccgct tgccggcacg ctgccaaccc ggtccgctca
      421 aaccgtttag cgtgcggcaa gcgaacgggc cgaataccta cattggaata attcgagagt
      481 aaaaataagg acttgcatca atcgcgttta atgcttttgt gaggatccaa cgtccaatat
      541 ggaacctgca tgcgtaacct ttttgccatt ctggtggttt tcggccttgt gagtttcgcg
      601 cctcacgcag cgcgtgctga cgattacaag ctcaccatca aggatcacaa gttcacgccg
      661 gaagaaatca aggtcccggc gaaccggcgg gtggcgatca cggtgatcaa tgaggacacg
      721 acggcggaag aattcgacag tacggctttg aaagtcgaga aggttattgc cggcaagtcg
      781 caaggcgtgg tgcggattgg cccgctcaag cccggccgat atcccttcat cggcgagttt
      841 catgaggcaa ccgccaaggg cgtcgtgatc gcggaataga acatgctcgg cgcacttatc
      901 atcgtctttc gcgaagtcat cgaagccggc ttgatcgtcg gcatcgtgat ggcagcgacg
      961 cgcggcgttg ccggccgtgg ccgctggatc agcatcggca tcggcagcgg cgtgctgggc
     1021 gcggcaatcg tcgcgctgtt tgccggcgcg atctcgcaga tgtttgcggg cgtcgggcag
     1081 gaactgttta atgccaccgt acttggcgtc gccgtggtca tgctgatgtg gcacaacgcc
     1141 tggatggcgc gccacggccg cgagatcgcc gctgaaatga aatcgatcgg cacggcggta
     1201 agcgaaggcg caaagccgct gaccgcgctc gccatcgtgg tcggtttggc ggtgctgcgc
     1261 gaaggctctg aagtggtgct gttcctctac ggcattttcg cctcgggcac atcgggcagc
     1321 gcgttgctgc tgggcggcgt gctcggcatc gccggtggcg cagcgtttac ggcgctcacg
     1381 tatttcggtt tgctggcgat cccgaaccgt tacatctttt cggtgacgag ctggttgatc
     1441 gcgctgttgg ccgccggcat ggcggcgcag tcggtacaat tcctcaacaa tgccggattt
     1501 gccgaaattc tgggccgcac ggtctgggat acgtcatgga tattatcgga aggcagcttg
     1561 ttcgggaaat tgctgcacac gctgatcggc tacaccgaac ggccgaccga attgcagctg
     1621 atggtctata tcgcgacgct gtttgcgatg ttcctgctga tgcgcttctc gcggtattcg
     1681 ccgggcaaga ccgttacagc ctagcgccgc cgcccaccaa gggccgcgaa ggccgcatcg
     1741 ggcgcgctgt cgatcagctt gagcagcgcg cgcgccggac cgcgagggct gcgcttgccc
     1801 tgctcccagt tgcgcacggt ctcgatcggc acttcgatct tttcggcaaa ggccgcttgc
     1861 gtcagcccgc agcgcgcccg cacctggcgc acgaacgacg ccggatcgga atgatcgacg
     1921 gttctctcgg tgccatcggg catgatctcg acgatccgcc catccgcctt cagccgaacc
     1981 cgcatcatga ttggtcccca cgttggtggc gtaggccaat gcactagctg attcgcgggt
     2041 ggcaaaagtt aatgcgagaa tgccctatcg cgtcttctcg aaaatctcgc ggccga
//
LOCUS       DATGBK010000120         2759 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_163453, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000120 DATGBK010000000
VERSION     DATGBK010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2759
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163453"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /gene="cydB"
                     /locus_tag="VKJ77_01750"
     CDS             complement(<1..405)
                     /gene="cydB"
                     /locus_tag="VKJ77_01750"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011548943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HMC44028.1"
                     /translation="MDLSLTWAAIIALGVLMYVVLDGFDLGIGILFPFFPEERDRDVM
                     MNTVAPVWDGNETWLVLGGAGLFAAFPMIYSTVLSGLYLPLMFMLVCLIFRGVTFEIR
                     SKATRTKHMWDLAFIGGSAGATFFQGVTLGAFL"
     gene            complement(407..1837)
                     /locus_tag="VKJ77_01755"
     CDS             complement(407..1837)
                     /locus_tag="VKJ77_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HMC44029.1"
                     /translation="MHATQQALDLARIQFAFTVSFHIVFPALSIGLASFIAVLEGAWL
                     KTGKPVYKELCLFWSKVFAVAFGMGVVSGVVMSYEFGTNWGGFSSFAGPITGPLLAYE
                     VMTAFFLEAGFLGIMLFGWNKVGPKAHFGATLMVAIGTLISTFWILASNSWMQTPQGF
                     RIEGDHVVPVSWFKIIFNPSFPYRLSHMAIAAFIVAALVVAASAAYHLLKGRRDPAIK
                     KMFSMSLWLLLVLTPLQAVVGDQHGLNTREYQPAKIAAIEGLWDTEKGGTALNLFGIP
                     DMEAETTKYAVSIPHLGSLILTHSWDGEIRGLKSFPKEDRPNSTIVFWSFRIMAGLGV
                     LMILMSVAGCVLRRKNKLFESKMFQRFVLVMGPSGFISLLAGWVTTEAGRQPWVVYGV
                     MRTAQAVSPVSAQQVGVTLLIFVIVYTLVFGTGIYYLLKLLRTGPALPGTPDTPGAIP
                     HAPRMDDDNLTARRPLSATTHSIEGA"
     gene            2299..>2759
                     /locus_tag="VKJ77_01760"
     CDS             2299..>2759
                     /locus_tag="VKJ77_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HMC44030.1"
                     /translation="MRLDDEAESRNVEDRRGAGGGGGGGFRIGGGRSIGIGTIVVALA
                     AAYFFGIDPMLILSGGSTGQSGSKSGSYSKPQTQQRQMDPRAQPQASASDRDAVFVRR
                     VLGNTERTWQQIFRTRYNQDYPAPKLVLFTGGTATACGTGQSAMGPFYCPN"
BASE COUNT          607 a          809 c          844 g          499 t
ORIGIN      
        1 gagaaacgcg ccaagcgtca cgccctggaa gaacgtcgcg cccgccgatc cgccgataaa
       61 cgcaagatcc cacatgtgct tcgtgcgcgt cgccttcgaa cggatctcga acgtgacacc
      121 gcgaaagatc aggcagacca gcatgaacat caacggcaaa taaagcccgg acagcacggt
      181 tgagtagatc atggggaacg cagcgaacag tccggcgccg ccgagcacaa gccacgtttc
      241 attaccgtcc cagaccggtg cgacggtgtt catcatgacg tcgcgatcac gctcttcggg
      301 gaagaacgga aacaggatgc cgatgccgag atcgaaacca tcgagtacta catacatcag
      361 cacgcccagc gcgatgatcg cggcccacgt tagggacaag tccatgtcag gctccttcga
      421 ttgaatgcgt cgtggcggac agcggccggc gcgcggtgag gttgtcgtcg tccatgcgcg
      481 gtgcgtgcgg aattgcgccg ggcgtatcgg gcgtacccgg caatgccgga ccggttctaa
      541 gcagtttgag caggtagtag atgccggtac cgaacacgag cgtataaacg atgacgaaga
      601 tcagcagcgt cacgcccact tgctgcgcgc taaccggcga cacggcctgc gccgtgcgca
      661 tcacgccgta gaccacccat ggttgacgtc ctgcttcggt cgtcacccag ccggcgagca
      721 gcgagatgaa gccggacggt cccatcacca gcacgaagcg ctggaacatc ttcgattcga
      781 acagcttgtt tttccgccgc agcacgcagc cggccacgct catcaggatc atcagtactc
      841 cgagccctgc catgatccgg aagctccaga acacgatggt cgagttcggc cggtcctctt
      901 tcggaaacga cttgaggccg cggatttcac cgtcccagct atgcgtgagg atcaggctgc
      961 ccaagtgcgg aatggacacg gcgtatttcg tggtttcggc ttccatgtca gggataccga
     1021 agaggttcag cgcagtgccg cctttctccg tgtcccacag gccttcaata gccgcgatct
     1081 tggccggttg atattcgcgc gtgttgaggc cgtgctggtc gccgactaca gcctgaagcg
     1141 gggtgagcac cagcagcagc cagagcgaca tcgaaaacat cttcttgatg gctggatctc
     1201 ggcgtccctt cagcaagtga taagcggccg atgctgccac cacgagcgcc gcgacgatga
     1261 acgccgcgat cgccatatgc gaaagccggt acggaaacga cgggttgaaa atgatcttga
     1321 accagcttac cggcacgaca tgatcgcctt cgatacgaaa cccctgcggc gtctgcatcc
     1381 agctattcga tgcaagaatc cagaaggtcg agatcagcgt gccgatggcg accatcagcg
     1441 tggcgccgaa gtgcgctttt ggtccgacct tgttccagcc gaacagcatg atgccgagga
     1501 atcccgcttc caggaaaaac gcggtcatca cttcataggc gagcagcgga ccggtgattg
     1561 ggccggcaaa gcttgaaaag ccgccccagt tggtaccgaa ttcgtagctc atcacgacac
     1621 cggacaccac gcccatgccg aacgcgacgg cgaacacctt cgaccagaac aggcataact
     1681 ccttgtagac cggcttaccg gttttgagcc aggcgccttc gagcaccgcg ataaaactcg
     1741 ctagcccgat gcttagcgcc gggaaaacga tgtggaaaga aaccgtaaaa gcgaactgga
     1801 tacgcgctag atcgagcgct tgctgagtgg catgcatggc aggttgtgca gccttcgcgg
     1861 gcgcactcga aacgagctcg cgggcgggcg ctggttggtt ggactaagta cgacggaagt
     1921 gactctaagc cagttttcga gatgaatggt gcggcgcggc aggcgacagg aatgtgcgga
     1981 aatgtcgcaa tttcaaacat gcgtgatccg taactcactg tttttaagta gttttttcga
     2041 tagatcacat tcgcgtccga aaccaccggt ttgctaattc cgcgacaatc gaccgcactg
     2101 cgtcaaagac ggttcgccgc gtgcagatga gggagggctt gtttcgggcg tcgcgtgtcg
     2161 agacgttatc ggcgtaattt ctgccgcggt ctaccggcat acgccgggta ccatgacgga
     2221 acagcatcac aggcgttttc tggtcggcat caccggcctg cagggaagcc aaccaaacgc
     2281 cgcgacggga gaaaaatcat gcgtcttgat gacgaagcag agagccgcaa tgtggaggac
     2341 cggcgtgggg ccgggggagg tgggggcgga ggatttcgca tcggcggagg acgctcgatc
     2401 ggtatcggca cgattgtcgt ggcgttggcg gccgcctatt ttttcggtat cgaccccatg
     2461 ctgattctga gcggcggttc gaccgggcag agtgggtcca agagtggttc ttatagcaag
     2521 ccgcagacgc agcaacggca gatggacccg cgcgctcagc cgcaggcaag cgcgagcgat
     2581 cgagacgcgg tgttcgtgcg ccgggtgctc ggcaacaccg agcgcacgtg gcagcagatc
     2641 tttcggactc gctacaacca ggattacccg gcgcccaagc ttgtcctctt caccggcggc
     2701 accgcgaccg cttgcggaac cggccagtca gccatggggc cgttctactg cccgaacga
//
LOCUS       DATGBK010000121         2064 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_186698, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000121 DATGBK010000000
VERSION     DATGBK010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186698"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..991
                     /locus_tag="VKJ77_01765"
     CDS             101..991
                     /locus_tag="VKJ77_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HMC44031.1"
                     /translation="MSSPTLPNVPLPAAVPRDAKAWLVSPALIFILALFVYPFVYGLV
                     LSFQPMNGGSAFANYIAFFTDTAMWPTIIVTLKLAVPATIINVGLSVPVAFALRRNSP
                     YQKFVTTLLVIPVTLGTVLIADGMLTYFGPNGWFSQAVHGLHLYSDEVRLTHNYWGVL
                     ISLIVSGFPFAFLLTLSYVTGIDPTLARAAATLGASPWEQFRQIYLPLLMPGLTMAAC
                     LSFVQAFSVFPSAVLLGAPAGPTRVISIAAAEAAFESYDYSLASAIAMVMGFVQLLVV
                     AGMLSTRRFFYTGPVTGGKG"
     gene            991..1923
                     /locus_tag="VKJ77_01770"
     CDS             991..1923
                     /locus_tag="VKJ77_01770"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44032.1"
                     /translation="MATDNHAPAWTAPPQASAPRDSRNDGAQPAKPMKPRVSLGDRLW
                     KLFVWGAMAFFLFNVLLLIATVAVNSVATRWFGTLMPPGFTLHWYAQAWSDFQLASVL
                     WVTMEVVGAVVILSIALGVPAAYALARVQFRGKRFAMLVFLLPLMVPPVTYGIPMATV
                     MYKVGLAGTLSGVILANLVPALPFVILVMTPFIEQIDPNLEAAARIFGANTARYFRYV
                     LLPLLMPGMLAAGLLVLVRTIGMFELTFFTAGPTTQTLVVALYYAVFSTGVRAPQSID
                     AMAMIYMAITLVWVLIALQFVSPTQLVSRVKEQR"
BASE COUNT          313 a          598 c          653 g          500 t
ORIGIN      
        1 gtaatctgtg ggcgcgcgtg acgggtgacg tggcggtggg tgaacccatt tgcctgcgtg
       61 ttccgccatc acgcacgctg gtgtacgacg gggaaacatc gtgagctcgc caaccctgcc
      121 aaacgttccc cttcccgctg cagtcccgcg cgacgccaaa gcgtggctgg tttctcccgc
      181 gctgatcttc atcctcgcgc tgttcgttta tccgttcgtg tacggcctcg tgctgtcgtt
      241 ccagccgatg aacggcggct ccgcgttcgc caactacatc gccttcttca ccgataccgc
      301 gatgtggccc accatcatcg tgaccttgaa gctcgcggtg ccggcaacga tcatcaacgt
      361 gggtctctcg gttccggtcg ctttcgcgtt gcgccggaat tcgccgtatc agaagttcgt
      421 gaccacgctg ctggtgattc cggtgacatt gggcacggtg ctgattgccg atggcatgct
      481 gacttatttc ggtccgaacg gctggttctc gcaggcggtg catgggctac atttatatag
      541 cgacgaagta cgtctcacgc ataactattg gggcgtgttg atatcgctga ttgtgtcggg
      601 gtttccgttt gcttttctgc tgacgctctc gtatgtgacc ggcatcgacc cgacgctggc
      661 gcgtgctgcg gcaaccctag gcgctagtcc ctgggagcag tttcgacaga tctatctgcc
      721 gctgctgatg cccgggctga ccatggccgc ttgcttgtcg ttcgtgcagg cgttctcggt
      781 gtttccgtcg gcggtgctgc ttggtgcgcc tgccggaccg acgcgggtga tctcgatagc
      841 cgcggccgaa gccgcattcg aaagctacga ctattccctc gcctccgcga tcgcgatggt
      901 gatgggcttc gtacagttgc tggtggtggc aggcatgttg agcacgcgcc gcttcttcta
      961 tacaggtccg gtgaccgggg gtaaaggctg atggcgaccg ataatcatgc acctgcctgg
     1021 acggctcccc ctcaagcctc ggctcctcgc gacagccgca acgacggtgc acaaccggcc
     1081 aagccgatga aaccgcgcgt aagccttggg gaccggctct ggaagctttt cgtctggggc
     1141 gcgatggcgt ttttcctgtt caacgtcctg ttactgattg cgaccgttgc cgtcaactcg
     1201 gtcgcgacgc gctggttcgg caccctgatg ccgcccgggt tcacgctgca ctggtacgcg
     1261 caggcatgga gcgacttcca gcttgcgagc gtgttgtggg tgacgatgga ggtggttggc
     1321 gcggtagtaa tcctgtcgat cgcactgggc gtgccggccg cgtatgcgct tgcccgtgtg
     1381 caatttcgcg gcaagcgttt cgcgatgctg gtgttcctgc tgccgctgat ggtcccgccc
     1441 gtcacctacg gcatcccgat ggcaaccgtc atgtacaagg tcggtcttgc cgggacattg
     1501 agcggcgtga tcctggcgaa cctggtgccg gcgctgccgt tcgtcattct cgtgatgacg
     1561 ccgttcatcg aacagatcga tccgaatctg gaagccgccg cgcgtatttt tggggcgaac
     1621 acggcgaggt atttccgcta tgtgctgttg ccgctgctga tgccgggcat gttggcggcg
     1681 ggcttgctgg tgctcgttcg tactatcggc atgttcgaac tgacgttctt taccgccggg
     1741 ccgaccacgc agacgctggt cgtcgcgctg tattacgcgg tcttttcgac gggtgtgcgc
     1801 gcgcctcaat ccatcgatgc aatggcgatg atctacatgg cgatcacgct ggtatgggta
     1861 ctgatcgcgt tgcagttcgt gagcccgacg caactcgttt cgcgggtcaa ggaacagcgg
     1921 tagcggtggg gggtagttgc gaaccttcac cttaaggttt gattgaaatg ttccgcttga
     1981 tgctggacgt ggcgagtgga tgcaaggaga cgtgtgcgga gcatttgaag ctgcataacg
     2041 cgcttacttt gtttaatccg gcgc
//
LOCUS       DATGBK010000122         2122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_24742, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000122 DATGBK010000000
VERSION     DATGBK010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24742"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1389
                     /locus_tag="VKJ77_01775"
     CDS             <1..1389
                     /locus_tag="VKJ77_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HMC44033.1"
                     /translation="RSYEQRSQHKAATETFEVVGSLWQVPMLLLASASVIATLAGIGT
                     SENVLQMAIATAGLLVVGLFLSAVALRVTRLPQRKTRRQSAYIRRLFKFFGRMVVLMI
                     WLAFLELASRFWGFSLTKLAEESVAARGITHAVSAILLTILIAWLVWILIDTGIQEAL
                     NPNTPRGKGRGPSMRARTMLPLIRNVVFVGLLSVAAIITAANLGLNVTPLLAGAGVIG
                     LAVGFGAQSLVADLITGLFIIIEDTISVGDSIEVDGGHAGVVETLTIRTVRLRDGQGA
                     IHAIPFSQIKVVKNLSRDFAYAVFEVRVPFSADVDQITQMIREVGAELMADFRYRREM
                     LGPIEVWGLDRFDPNWMVVKGQIKTLPLKQWSVARAFNVRVKRKMDEIGMDVPVPQMQ
                     LRVSREPGGMDTDLNDLEELTEAAPLSPVERSGAAMARDVSHKSQAAPPPTDQSVQVP
                     PQIPTASEPGKA"
     gene            complement(1444..1986)
                     /locus_tag="VKJ77_01780"
     CDS             complement(1444..1986)
                     /locus_tag="VKJ77_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine dioxygenase family protein"
                     /protein_id="HMC44034.1"
                     /translation="MTSALATKSPLARLSDALDQACCLDPSSAGFALGVRSALNGLAR
                     EAGLLSDAQREGGADCYRRHLLVADPLGRYAVAALVWQAGQASPVHGHHTWCAYTVIE
                     GTLSETLFAWDADTNRAVQTRRHERSHGAVSFVGAGRGAIHQLGNASATGRTAVSLHI
                     YGVPAAHISTHVNDLVTVAA"
BASE COUNT          411 a          600 c          701 g          410 t
ORIGIN      
        1 cgttcgtatg agcagcgcag ccagcacaag gccgcgaccg aaacgttcga ggtggtcggc
       61 tcgctctggc aggtgccaat gctgctgctt gcatcggctt cggtgatcgc gacgcttgcg
      121 ggtattggca cctccgagaa cgtcctgcaa atggcgatcg caaccgcagg cttgctggtg
      181 gtcggactgt ttctcagcgc tgttgcgctg cgggtcacgc gactgccgca acgcaagacg
      241 cgccggcaat cggcgtatat acggcggctt ttcaagttct tcggccgcat ggtcgtgctg
      301 atgatctggt tggccttcct tgaacttgcc tcgcgtttct ggggtttttc gctcaccaaa
      361 ctggcggagg aaagcgtggc cgcacgcggc atcacgcatg cggtgagcgc gatcctgctg
      421 accattctta tcgcgtggct ggtgtggatc ctgatagata cggggattca ggaggcgctc
      481 aatccgaaca cgccgcgcgg caaagggcgc ggtccgagca tgcgcgcgcg caccatgctg
      541 ccgctcattc gcaacgtggt gttcgtggga ctgctgagcg tcgccgcgat cattaccgcc
      601 gccaatcttg ggctgaacgt gacgccgttg cttgctggcg ccggcgtgat cgggctggcg
      661 gtgggctttg gtgcgcagtc gctagtggcg gatctgataa cgggactttt catcatcatc
      721 gaggacacca tttctgtcgg cgattcgatc gaggtcgacg gcggccatgc gggcgtggtg
      781 gaaacgctga ccatccgtac cgtgcgactg cgcgatgggc agggcgcgat tcacgccatc
      841 ccattttcgc agatcaaggt ggtgaagaac ctgtcgcgcg attttgctta tgcggtgttc
      901 gaagtgcggg tgccgttttc cgccgatgtc gaccagatca cgcagatgat tcgtgaggtc
      961 ggtgcggaat tgatggccga ttttcgatac cggcgcgaga tgcttggacc gatcgaagtg
     1021 tgggggctgg accgtttcga tcccaactgg atggtcgtga aagggcagat caagacattg
     1081 ccactgaagc aatggagcgt cgcgcgggcg ttcaacgtca gggtcaagcg caagatggac
     1141 gaaatcggca tggacgttcc ggtgccgcaa atgcaactgc gggtatcgcg ggaacccggg
     1201 ggtatggaca cggacttgaa cgatctggaa gagttgacgg aagcggcacc gttgtcgccg
     1261 gtggaacgca gcggggcagc catggcccgc gatgtttcgc ataaatccca ggccgcgccg
     1321 ccgccgaccg atcaatccgt gcaagtaccg ccgcagattc caacggcgtc tgagccgggg
     1381 aaagcgtagg gcagctctgc gcggctgttt ctgtatgacg ggactgacgc ccgccgacgc
     1441 gtgttaagcg gcaaccgtga cgagatcatt gacgtgcgtc gagatgtgcg cggcgggcac
     1501 gccatagata tggagcgaga ccgcggtgcg tcccgtcgcc gatgcgtttc ccaactggtg
     1561 aattgcgcca cgccccgcgc cgacaaacga caccgcgccg tgcgagcgtt cgtggcggcg
     1621 cgtttgaacc gcccgattcg tgtcggcatc ccacgcgaac agcgtctcgg acagcgttcc
     1681 ttcaatcact gtataagcgc accacgtgtg atggccatgt accgggctcg cctgaccagc
     1741 ctgccagacg agcgcggcga cggcgtagcg gccgagcgga tcggcgacca gtaaatgacg
     1801 ccgataacaa tccgccccgc cttcacgctg ggcatcggac aaaaggcctg cttcccgggc
     1861 caagccattg agggctgacc gtacaccaag cgcgaacccc gccgacgacg gatcgaggca
     1921 gcaggcttga tcgagtgcat cggacaaccg cgcgagcggc gactttgtag caagggcaga
     1981 ggtcatggcg aggctcgtca ggaaggcgga atcaggcaga aaggagcgga aagctgagct
     2041 tcttttatac cggtttgcat gtggaaaaag tttccatata atttcgccaa ggcacggaaa
     2101 agtagaataa tttcctacaa gg
//
LOCUS       DATGBK010000123         2528 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_279044, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000123 DATGBK010000000
VERSION     DATGBK010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279044"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(190..1833)
                     /locus_tag="VKJ77_01785"
     CDS             complement(190..1833)
                     /locus_tag="VKJ77_01785"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014898193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase"
                     /protein_id="HMC44035.1"
                     /translation="MERIWLKAYPPGVPADIDSTQYRSLPDLLDESFKAFAPRHAFAC
                     MGRTLTYAELDVQSRNLGAWLQSKGLARGARVAIMMPNVLQYPVAMAAILRAGYVIVN
                     VNPLYTPRELEHQLVDSGAEAIVLLEPFDAVLQAVQRNTRVLHVVVTSIGEMMGVSDP
                     FASDEQAPTPRTTFSDALAHGARSPFTRADLEPDDLAVLQYTGGTTGVSKGAMLLHRN
                     LIANVLQSEAWREPLTRDRPHVDPIVTAVALPLYHIFGLTVCAFLTMRAGGLGVLIPN
                     PRDIPGMIKALQGYAINSFPAVNTLYNALLNDPAFDTLDLSRLMLANGGGMAIQQGVA
                     ARWFERTGKPIIEGYGLSETSPCATTNPSNGTAFNGTVGVPLPSTFIAIRDDDGRDVA
                     HGEPGEICIFGPQVMVGYWNRPDETASVMTPDGYFKSGDIGIMDERGFVRIVDRKKDM
                     VIVSGFNVYPNEIEDVVASHPGVFEVAAIGMRDEHSGEAVKLFIVRRDPALTEGDILA
                     FCREQLTGYKRPKAVEFCDELPKSNVGKILRRKLREREN"
     gene            complement(1864..>2528)
                     /locus_tag="VKJ77_01790"
     CDS             complement(1864..>2528)
                     /locus_tag="VKJ77_01790"
                     /inference="COORDINATES: protein motif:HMM:NF026214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="HMC44036.1"
                     /translation="ERARRTVDMMNGTEAVRAAARVALGDGDWRWAAELATLLVRLDT
                     TDSDARAIKAEALRELGYRTENTNWRNWYLSAARELEHAYDELPFAGGGGLASMDVMR
                     AQPLGNVLQRLCVSVDPVLSADVHMILTLWLTDRDATFALELRKGVLQVHERPWPNAD
                     LQLALDTTALYTMLRDIAGQVPEMLQEGTVVLERGTMDQLRTYIACFDRPSRRLPALA
                     AR"
BASE COUNT          499 a          810 c          717 g          502 t
ORIGIN      
        1 cacctattcg atagagaagc gcctgattaa tcccatttcc gcagcggcgt attcgacgtg
       61 gcttttttag cgctgcggcc tgcaccgtcg tgttttgaaa tttgattaca acactcgctg
      121 acccgtgctt caaggtccgc ttccggctga gtcctatccg attcgaactc agccgatatc
      181 acccgcttcc tagttttccc tctcccgaag cttgcgcctc aagatctttc ccacattgct
      241 cttggggagt tcatcgcaaa actcgacggc cttcggtctc ttgtaaccgg tcagctgctc
      301 ccggcaaaac gcaaggatgt cgccctctgt gagagcaggg tcacgacgca cgatgaaaag
      361 cttcactgcc tcacccgaat gttcgtcgcg cataccaatt gccgcgacct cgaacacgcc
      421 tgggtgcgag gcgaccacgt cctcgatctc gtttggatac acgttgaagc cggacacaat
      481 gaccatgtcc ttcttgcgat cgacaatcct cacgaagccg cgttcatcca tgatgccgat
      541 atctcccgat ttgaagtaac cgtccggcgt catgacgctg gcggtttcat caggacggtt
      601 ccaatagccc accatcacct gcggcccgaa aatgcagatt tcgccgggct cgccgtgggc
      661 aacgtcacgc ccgtcgtcgt cgcgaatcgc gatgaaagtc gaaggcaatg gcaccccgac
      721 cgtaccgtta aaagcggtgc cgttggacgg gttggttgtc gcgcacggcg aagtctcgga
      781 aagtccatag ccttcaatga tcggcttgcc cgtcctctca aaccagcgcg ccgccacgcc
      841 ttgctggatt gccatgcctc cgccgttcgc aagcatcagc ctggacagat cgagcgtgtc
      901 gaaagcggga tcattcaaca gcgcgttgta gagcgtgttg acggccggaa acgagttgat
      961 cgcgtaaccc tgcagtgcct ttatcatccc aggaatatcg cgtggattcg gaatgaggac
     1021 accaagtccg ccagcccgca tggtcaggaa cgcgcatacc gtcagtccga agatgtgata
     1081 cagcggcaag gcgaccgcag tgacaatcgg atcgacatgg ggacggtccc gggtcaacgg
     1141 ctcgcgccac gcttcgctct gaagcacgtt ggcgatcagg ttcctgtgca gcagcattgc
     1201 ccctttggaa acgcccgtcg tgccgcccgt gtattgcagc acggccaagt catccggctc
     1261 gagatcggca cgcgtgaaag ggctacgggc accgtgcgcc aacgcgtcgc tgaaggtggt
     1321 gcgcggggta ggcgcctgct cgtcggacgc aaacgggtct gacaccccca tcatctcgcc
     1381 tatcgacgtc accacgacat gcaacacccg cgtgttgcgt tgaacagcct gcaggactgc
     1441 atcgaatggt tcaagcagga cgatcgcctc ggccccgctg tcgaccagtt gatgttcgag
     1501 ttcgcgcggc gtatagagcg gattgacgtt cacgatcaca tagccggcgc gcaatatggc
     1561 cgccattgcc actggatact gcagcacatt cggcatcatg atcgcgaccc gggcgccccg
     1621 cgcgagcccc ttcgattgca gccacgcgcc gagattgcgc gactgcacgt cgagttccgc
     1681 atacgtcagc gtgcggccca tgcaggcaaa cgcatgccgt ggagcaaacg ccttgaagct
     1741 ctcgtcgagc aggtcgggca gcgaacggta ttgcgtcgag tcgatatccg cgggaacgcc
     1801 aggcggatag gctttcagcc agattctttc cattgtgctt ctcattgcgc ttctcctcga
     1861 tgtctaacgc gccgcaagtg cgggcaagcg tcgggacggc cggtcaaagc acgctatata
     1921 cgtacgcagt tgatccatag ttccgcgttc gagcacaacg gttccttctt gaagcatctc
     1981 cggcacctgg cccgcgatgt cgcgcagcat cgtgtacaaa gcggtggtat cgagtgcaag
     2041 ctggaggtca gcatttggcc acgggcgctc gtgaacctga agcaccccct tgcgcaattc
     2101 cagcgcgaac gtggcgtccc gatccgtcag ccacagtgtg aggatcatgt ggacatcggc
     2161 agacagcaca ggatcgacag aaacgcagag gcgctgtaat acgttaccaa gtggttgcgc
     2221 gcgcatcacg tccattgatg ccagcccgcc gccgcccgcg aacggcagtt cgtcataagc
     2281 atgttccagc tcgcgcgccg cgctcaagta ccagttgcgc cagttcgtgt tctcagtgcg
     2341 ataccccaac tcgcgcaacg cctccgcctt gatcgcccgt gcgtcggaat ccgtggtatc
     2401 gagtcgcacg agcaacgtgg cgagctcggc agcccagcgc cagtcaccgt ccccgagcgc
     2461 cacccgggcg gccgcgcgca cggcctcggt gccgttcatc atgtcgacgg tgcgacgcgc
     2521 ccgctctc
//
LOCUS       DATGBK010000124         2592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_140411, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000124 DATGBK010000000
VERSION     DATGBK010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2592
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140411"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..210)
                     /locus_tag="VKJ77_01795"
     CDS             complement(<1..210)
                     /locus_tag="VKJ77_01795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HMC44037.1"
                     /translation="MTFSVRGIAVWLGFVLAAALLAGCDSKPAFTNLDITGNTQFGSD
                     FTLPDTSGKPRTLGDFKGKAVVLFFG"
     gene            complement(207..1112)
                     /gene="cyoE"
                     /locus_tag="VKJ77_01800"
     CDS             complement(207..1112)
                     /gene="cyoE"
                     /locus_tag="VKJ77_01800"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HMC44038.1"
                     /translation="MDSTTLISPSGNRLSQYIALTKPRVTQLAVFCAVIGMFLATPGM
                     VPWTVLIGGTVGIWLLAGAAFAINCLMEQKIDAMMRRTAWRPSARGEITPAQILLFSA
                     LLGGAGMWTLYTFTNALTMWLTIATFVGYAVIYTCLLKPATPQNIVIGGASGAMPPAL
                     GWAAVTGHVPGDAWILVLIIFVWTPPHFWALALYRRKDYENAGLPMLPNTHGEKYTRL
                     HILLYTVILFAVSMMPFISGMSGVLYLASAVVLSGTFLGYAWKIYREYSDALARKTFR
                     FSILYLSLLFGALLVDHYVRTVIGL"
     gene            complement(1119..2264)
                     /locus_tag="VKJ77_01805"
     CDS             complement(1119..2264)
                     /locus_tag="VKJ77_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014895968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HMC44039.1"
                     /translation="MTYVLQLGLIGICIALLPLSYVWVKADDNKFRKLVWLTTFLTLD
                     LVMFGGFTRLTDSGLGCPDWPGCYGTSSPFIAHAAIAAANQAMPTGPVSIGKAWIEMI
                     HRYFAMAIGVLIIAQVLIAWTARFKRRPLHVSPWWPTGILMLIVVQGAFGAWTVTMKL
                     QPVIVTTHLLLGLALLGSLGWLAARQTPIPAIDLAAARWLPAALFGLLLLVVQIALGG
                     WVSTNYAVLACTDFPLCNGAWIPPMNFEHGFHLWRSLGMTGDGDVISQDALVAIHWTH
                     RTFAIVVVLYTLWLAAKLRRFESLRKPANGIMIVIVVQFLTGLSNILLQWPLPIAVAH
                     NGGAAILLLLLVMVNFRISSSRPGHVVGSSATALRDAVPASLPRQAP"
     gene            complement(2289..>2592)
                     /locus_tag="VKJ77_01810"
     CDS             complement(2289..>2592)
                     /locus_tag="VKJ77_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006024435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome C oxidase subunit I"
                     /protein_id="HMC44040.1"
                     /translation="VRVLQSAERERVVNVWLRTDDKPVSSVIRAAYPQPDTRMLVAAD
                     PKAVAAWLPSGADSQLTDHIFLVDPNGNLMMRFPKNPEPEKIKADLAKLLKWSRIG"
BASE COUNT          593 a          810 c          778 g          411 t
ORIGIN      
        1 gccgaagaac agcacgacgg ccttgccttt gaagtcaccg agcgtgcgcg gtttgccgct
       61 ggtgtcgggc aacgtaaaat cgctgccgaa ctgcgtattg cccgtgatgt cgagattcgt
      121 gaacgccggt ttgctgtcgc atcctgcgag cagcgcggcg gccaaaacga atcccaacca
      181 aacggcgatt ccccgaaccg aaaacgtcat aagccgatca ccgtccgcac gtaatgatcc
      241 acgagcagcg cgccgaacaa cagcgacaaa tacaagatgg agaaccgaaa ggtcttgcgc
      301 gcaagggcat cggaatattc acgataaatc ttccacgcgt aaccgaggaa cgtcccgctg
      361 agcacaacgg ccgacgccag atagagcaca ccgctcatgc cggagataaa cggcatcatg
      421 ctcacggcaa acaggatcac cgtgtacaaa aggatatgca gacgcgtgta tttctcgccg
      481 tgcgtgttcg gcagcatcgg caagccggcg ttctcgtagt ctttgcgccg atacaacgcc
      541 agcgcccaaa agtgcggcgg tgtccacacg aagatgatca ggacaagaat ccacgcgtcg
      601 ccgggtacat ggcccgtgac ggctgcccag ccaagtgccg gcggcatggc acccgacgcg
      661 ccaccgatca cgatgttctg cggcgttgcg ggtttcagca agcacgtata aatcaccgca
      721 tagccgacaa acgtcgcgat tgtcagccac atggtcagcg cattcgtgaa cgtgtagagc
      781 gtccacatgc ccgcgccgcc gagcagcgct gaaaacagca agatttgcgc aggcgtgatc
      841 tcgccgcgtg cggaggggcg ccacgcggtc cggcgcatca ttgcgtcaat cttctgttcc
      901 atcaggcagt tgatggcgaa cgcggcgccg gccagcaacc agatgcccac ggttccgcca
      961 atcagcacag tccacggcac catgcccggc gtggccagga acatgccgat gaccgcgcag
     1021 aaaaccgcga gttgcgtcac acgcggtttg gtcaacgcga tgtactgcga gaggcggtta
     1081 ccggaagggg aaatcagtgt cgtgctgtcc atagaaactc acggagcttg gcgcgggagt
     1141 gatgcgggaa cggcgtcgcg cagggcagtg gcagatgacc ccacaacgtg gccgggacgg
     1201 ctggaagaga ttcgaaagtt taccataacg agcaacagca aaaggatggc cgccccgccg
     1261 ttgtgcgcca cggcaatggg cagcggccac tgcagcagga tgttcgacaa tcccgtcagg
     1321 aactgcacga cgatcacgat catgatgccg ttggcgggtt ttctcaacga ctcaaatcgt
     1381 cgcagtttcg ccgcgagcca cagcgtatat agcacgacga cgatcgcgaa ggtcctgtgg
     1441 gtccagtgga ttgcgacgag cgcgtcctgc gagatgacat cgccgtcgcc ggtcataccg
     1501 agcgagcgcc acaggtggaa gccgtgctcg aagttcatcg gcggaatcca cgcgccgttg
     1561 cacagcggga agtccgtgca ggcgagcacc gcatagttcg tgctgaccca gccgcccagc
     1621 gcaatctgaa ccaccagcag caacaatccg aatagcgccg cgggcagcca gcgggcggcg
     1681 gcgagatcaa tagcaggaat cggcgtctgg cgcgcggcca gccagccgag cgagccgagc
     1741 aaggccagcc cgagcaacag atgcgtggtc acaatgaccg gctgcagctt catggtgacg
     1801 gtccaggcgc caaacgcacc ctgcaccacg atcagcatca ggatcccggt cggccaccag
     1861 ggcgacacgt gcagcggccg acgcttgaaa cgcgccgtcc atgcaatcag gacctgcgcg
     1921 atgatcaaca cgccgatcgc catggcgaaa taacggtgga tcatttcgat ccacgccttg
     1981 ccgatactca ccggccccgt cggcatcgcc tgattggcgg cggcaatggc cgcgtgcgca
     2041 ataaacggcg acgacgtgcc atagcaaccc ggccaatcgg gacaaccgag acccgaatcg
     2101 gtcagtcgag tgaaaccacc gaacatcacg aggtcgagcg tcaggaacgt ggtcagccag
     2161 acaagcttgc ggaacttgtt gtcgtcggcc ttcacccaca cgtacgacag cggcaacaac
     2221 gcaatgcaga tgccgattag gccgagttgt aaaacgtaag tcatgcgtgc actgtcctca
     2281 actcgtcttc aaccgatccg cgaccacttc agcagcttcg ccagatccgc cttgatcttc
     2341 tccggctccg gattcttcgg gaaccgcatc atgagattgc cattgggatc gaccaggaag
     2401 atgtgatcgg tgagttgcga atccgcgccc gacggcagcc acgccgccac ggctttaggg
     2461 tcggcggcga ccagcatgcg cgtgtccggc tgcggataag ccgcgcggat cacgctcgac
     2521 accggtttgt catcggtgcg aagccagacg ttgaccaccc gttcgcgctc agccgattgc
     2581 agcacgcgca cc
//
LOCUS       DATGBK010000125         2700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_325502, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000125 DATGBK010000000
VERSION     DATGBK010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325502"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..897
                     /locus_tag="VKJ77_01815"
     CDS             1..897
                     /locus_tag="VKJ77_01815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012218416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HMC44041.1"
                     /translation="MWASHHGSMEAQSAREPMMQKTWFITGASRGLGALIAKAAIRAG
                     DRVVATGRKREDIVKSLGQDNDQLLSAELDVTDAAQAHAAVKAAVSRFGGIDVLVNNA
                     GYGHLGFFEENTIEDVQAQFATNLFGVFNVTWAALPVMRAARHGRIFNISSLAGILGA
                     ELGSLYCASKFALEGFSESLAKEIAPFGLFVTIVEPGPFRTDFLTGESLRFGQTMVAD
                     YDDRRGRLRASFEQRDGQQPGDPVKLAQALVDLANESAPPMRFVAGSVAVNAADAKLA
                     GMQAELDRWRTLSVATDGDYPA"
     gene            1271..1834
                     /locus_tag="VKJ77_01820"
     CDS             1271..1834
                     /locus_tag="VKJ77_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HMC44042.1"
                     /translation="MIDRDSDITATVLRERTKLGNFIRRRVRDPSDAEDILQDVLHEF
                     VRAYRLPEPIEQVSAWLFRVARNRIIDRFRKKKEQPLSETAGTSDTGDAVDDEYRLDL
                     ALPAHDAGPEAAYARSVLLAALQHALDELPENQRDIFVAHEIEGHSFKELASESGVAL
                     NTLLARKRYAVLHLRARLQTVYDELDI"
     gene            1847..2161
                     /locus_tag="VKJ77_01825"
     CDS             1847..2161
                     /locus_tag="VKJ77_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008917815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44043.1"
                     /translation="MRFRLRFLGKALLVIVGVAVLGWMVMTLWNWVVPALFVGARAID
                     FAHALGLLILSRILFGGFRGHGGWRGRQQWRRWEQMTPEEREKFQKGMRCGRGKPQED
                     AV"
     gene            2158..2454
                     /locus_tag="VKJ77_01830"
     CDS             2158..2454
                     /locus_tag="VKJ77_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007884632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HMC44044.1"
                     /translation="MSNTSASACKQAPGVIVPVVNFNRCEGKADCAVVCPENVFDIRR
                     IDTADYQRLGPLQKFKLRVHGMKVAYTPNADACRACGLCVTACPERAITLARMS"
     gene            2593..>2700
                     /locus_tag="VKJ77_01835"
     CDS             2593..>2700
                     /locus_tag="VKJ77_01835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008924290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC44045.1"
                     /translation="MLIALGGLPGTGKTTVAQTLARKLAAVYLRIDTLEQ"
BASE COUNT          528 a          805 c          831 g          536 t
ORIGIN      
        1 gtgtgggcat cgcatcatgg ttccatggag gctcaatcag caagggagcc aatgatgcag
       61 aaaacatggt ttatcacagg tgcaagccgc ggtcttggtg cgcttatcgc taaggctgcg
      121 atccgggcag gtgatcgggt cgtcgccacg gggcgcaagc gcgaggatat cgtcaagagc
      181 ctggggcagg acaacgacca actgctgagt gctgaactgg atgtcacgga cgcagcccag
      241 gcgcacgctg cggttaaagc cgccgtgtcg cgattcggtg ggatcgatgt actcgtgaac
      301 aacgcgggat acggccatct gggattcttc gaagagaaca ccatcgagga cgtgcaggcc
      361 cagttcgcca ctaatctgtt cggcgttttc aacgtgacgt gggctgcgtt gcccgtcatg
      421 cgtgccgctc gccacggacg catcttcaac atttcgtcgc ttgccggcat cctcggtgcg
      481 gaattgggtt cgctttactg cgccagcaag tttgcgctcg aaggtttctc cgagtcgttg
      541 gctaaggaaa ttgccccgtt cggtctcttc gtaacgattg tcgagcccgg ccctttccgc
      601 accgacttcc tcaccggcga atcgcttcgg tttgggcaaa ccatggtagc cgactacgac
      661 gaccggcgcg ggcggctgcg tgcgtccttc gaacaacgcg atggccagca accgggcgat
      721 cctgtgaagc tcgcacaagc actggtagat ctggcaaacg agtctgcgcc gccgatgcgt
      781 tttgtcgccg gatccgttgc cgtcaatgcc gcggacgcga aactcgccgg catgcaagcc
      841 gagctcgacc gctggcgcac gctttcggtc gccactgacg gcgactaccc cgcctagcta
      901 gttgatctgt ctggatcaca tcagcgtaac gtggagcggg cgctgagcga ccggtgccgg
      961 cgtcgcctct attgctcgtg atgagtcccg gcacggcgat tcatttcgcc ggccaccgtc
     1021 ccaaacgccc tattccgacg ccgagcagat tcggacatac cccgcgcgca cctctgccgt
     1081 ccttccctgc cccctcatac atcagatcca ccgccgcgga caaaatcgtg gtctcctgtc
     1141 atttcgcgtc gcgggcgctc agcctgtgcc gcccacccgg tcctgacgcc agatttttcc
     1201 ctgctgccca caatattccc gatcgtgaaa cgtcttcacc tgtatggaac agccgccgcc
     1261 cacgaacccg atgatcgata gagatagcga catcaccgcg accgtcttgc gtgagcgtac
     1321 gaaactcgga aacttcatcc ggcgtcgcgt gcgtgatcca agcgacgccg aagacatctt
     1381 gcaagacgtg cttcacgagt tcgtgcgggc gtaccggctt cccgaaccta ttgaacaggt
     1441 cagcgcctgg ctgtttcgcg tggcgcgtaa ccgcatcatc gaccgctttc gcaagaagaa
     1501 agagcagcct ctgagcgaga cagccgggac cagtgacacc ggcgatgccg tcgacgacga
     1561 ataccggctg gatctggcgc ttcccgcaca cgatgccggg ccggaagccg cctatgcccg
     1621 gtcggtgctc ttggcggccc tgcaacacgc gctcgacgaa ttgccggaaa accagcgcga
     1681 cattttcgtg gcccacgaaa tcgagggcca cagcttcaag gaactggctt cagagagcgg
     1741 cgtagcgctg aacacgctgc tggcacgcaa gcgttatgcg gtgctgcacc tgcgcgcccg
     1801 cttgcaaacc gtctatgacg aactggatat ttaaaggaga aggtagatga gattcagact
     1861 gagattcctc ggcaaggcac tgctcgtgat cgtgggcgtt gcggtactgg gatggatggt
     1921 gatgacctta tggaactggg ttgttccggc gctgttcgtg ggggctcgcg cgatcgattt
     1981 tgcccatgca ctgggcctgt tgatcctgag ccggatcttg ttcggcggat tccggggcca
     2041 tggcggctgg cgtgggcggc aacagtggcg ccggtgggaa cagatgacac cggaggagcg
     2101 cgagaagttt cagaagggca tgcgctgcgg ccgcggcaag ccgcaagagg atgcggtatg
     2161 agcaatacgt cggcatccgc atgcaaacag gcaccgggcg tgatcgtgcc ggttgtgaac
     2221 ttcaaccggt gcgagggcaa ggccgattgc gcagtcgtgt gtcccgagaa tgttttcgac
     2281 attcgtcgga tcgacaccgc cgactatcag cgcttggggc cgttgcagaa attcaagctg
     2341 cgagtgcatg gcatgaaggt cgcgtacacg ccgaacgccg atgcgtgccg ggcatgcggg
     2401 ttatgcgtga ccgcgtgtcc cgaacgcgcc attaccctgg cccggatgag ttgacagtgc
     2461 cctgatagcg ccggtgccgg tgccgagatt catctaacct tgaaagctgc tgacgctcca
     2521 tgctcgcttg aatcagtgcc ccgactgtct tacattcggg acaacaaccg tccaatatag
     2581 ggagcatttg aaatgttgat tgccttggga ggattaccgg ggaccggaaa gacgacggtc
     2641 gcgcaaacgc tcgcacgcaa gctcgcagcg gtttatctac gtatcgacac gttggaacag
//
LOCUS       DATGBK010000126         1531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_47943, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000126 DATGBK010000000
VERSION     DATGBK010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47943"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1531
                     /locus_tag="VKJ77_01840"
     CDS             <1..>1531
                     /locus_tag="VKJ77_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007743875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HMC44046.1"
                     /translation="ELRGPRTWAIAPGMEDTAVDGRERRDMSGFSDTHYTVVNAAQRL
                     VVETACIRLTVEHDGGFCSWEVLKEGTWHRVLSDRRTQAYNFGWWDSRVYHYVERQRG
                     ELYIGLGERAGSLDRANQSYEMRNIDAMGYSARTTDPLYKHIPFYVTWQPETATGFGL
                     FYDTLADCRFDMGRELDNYHGAYRHFIAEHGDLDYYFIASPGTPLSAVRRFTWLTGRP
                     AWMPKWGLGYSGSTMSYTDAPDAQARMGEFIERCSEHDILCDSFHLSSGYTSIGAKRY
                     VFNWNHDKFPDIEAFVSGYLEHGVRLCANIKPCLLQDHPAFKEVDEAGLLIRARDGSP
                     AWVQFWDEVGAYLDFTNPAAIDWWKARVKDSLLQYGIAATWNDNNEFEIWTPDAMAHG
                     FGKSFPAQQAKVLQTQLMMRASRDAQREHAPGKRPFLVSRSGGVGMHRYVQTWSGDNT
                     TSWETLRYNLKMGLGLAMSGVSNTGHDIGGFSGPAPEPELFVRWVAFGIFLPRFSIHS
                     WN"
BASE COUNT          305 a          456 c          484 g          286 t
ORIGIN      
        1 gagcttcgcg gaccccgcac ttgggcgatt gcgccaggga tggaagacac agcggtcgac
       61 ggccgcgaac gccgcgacat gagcggcttc agcgacacgc actacacggt agtgaacgca
      121 gcgcagcggc ttgtggttga aactgcctgc atccgtctta ccgtcgagca cgacggagga
      181 ttctgttcgt gggaagtgct caaggagggg acgtggcatc gcgtgttgag cgatcgccgg
      241 acccaggcgt acaacttcgg ctggtgggac tcacgggtct atcactacgt cgagcgccag
      301 cgcggcgagt tgtacatcgg actgggtgag cgcgccgggt cgcttgaccg agcgaaccaa
      361 agctacgaga tgcgcaacat cgacgcgatg ggttatagcg cccgcacgac agatcctctg
      421 tataaacaca tccctttcta cgtgacatgg cagccggaaa cggccacggg atttggcctg
      481 ttctacgata ccctcgccga ctgccgtttc gacatgggcc gcgagttgga caattaccac
      541 ggcgcctatc ggcatttcat tgccgaacac ggagacctcg actactactt catcgcgtcc
      601 ccgggcacgc cgctctcggc cgtgcggcgc tttacctggt tgacggggcg cccggcgtgg
      661 atgccaaagt gggggctcgg gtattccggc tcgaccatga gttataccga cgcacccgat
      721 gcacaggcgc gcatgggcga attcatcgag cggtgcagcg agcacgacat tctgtgcgac
      781 tcgtttcatc tgtcctcggg ctacacgtca ataggcgcga aacgctacgt cttcaactgg
      841 aatcacgaca agtttccgga catcgaggct ttcgtcagcg gctatctcga gcatggcgtg
      901 cggttgtgcg ccaacatcaa accttgcctg ctgcaggatc acccggcctt caaggaagtc
      961 gatgaagccg ggctcctcat tcgcgcccga gacggcagtc ccgcgtgggt gcagttctgg
     1021 gacgaggtcg gcgcgtacct cgacttcacg aaccccgcag cgatcgactg gtggaaagcg
     1081 cgggtcaagg acagcttgct gcaatacggc atagccgcca cctggaacga caacaacgag
     1141 ttcgagatct ggacgccgga cgccatggcg catggctttg gcaaatcatt tccggcgcag
     1201 caggcgaagg tgctgcagac ccagttgatg atgcgcgcat caagagatgc acagcgcgaa
     1261 cacgcgccgg gcaagcgtcc attcctggtg tcgcgctccg gtggcgttgg catgcatcga
     1321 tacgtacaga catggtcggg cgacaacacc acctcatggg aaacactgcg ctacaacctg
     1381 aagatgggtc tgggtctcgc gatgtcgggc gtgtcgaaca cggggcatga cataggcggg
     1441 ttttcggggc ccgcgccgga gccggaactg ttcgtgcgct gggtggcgtt cggcatattc
     1501 ctcccgcgtt tcagtatcca ctcatggaac g
//
LOCUS       DATGBK010000127         3314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_24749, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000127 DATGBK010000000
VERSION     DATGBK010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3314
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24749"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..176
                     /locus_tag="VKJ77_01845"
     CDS             <1..176
                     /locus_tag="VKJ77_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006578605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HMC44047.1"
                     /translation="PGQLMSAAAFLDGKPEVNDETISAAMSGNVCRCGTYARIRRAIK
                     RAAPELLSSKKEA"
     gene            176..2425
                     /locus_tag="VKJ77_01850"
     CDS             176..2425
                     /locus_tag="VKJ77_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC44048.1"
                     /translation="MRDASKPAVALVESREVSRRRFLKQGSALLAAGVAVGFRLPDAR
                     ANEASGGAASTNATNEFEPNAWVRVLPDDTIKLVVHKHDSGTGTRTALAAIVAEELDV
                     DPFAVDVITPENPFYAVYIHPLWKVFSTGGSTSVSLEYDRLRMAGATARAMLVAAAAN
                     QWNVPAASCSTASGYVEHAPSGRRANYGSLAEAAARVPVPSAIALKDPAQFRYIGKLR
                     KKRGAAQKAAGTFQYSIDVDLPGMLVAVITRAPVIDARVRSVDSSNALKLPGVRSVIE
                     IPGRPDVLGGNQAGVAILADDYWSAHQGQAALQIEWDDSLFESFNSDALAAHQAAWLD
                     SPAAHVVPTIQSGDAKAAWTHPARVIEASYSMPYKAQSPMEPVNVTAWASKDAIAYWG
                     GIQVPSTAQEAAEVIGGFKGDQVTVHELVSGGSFGARESKYWLLEVTYLAVKTGKPVK
                     LMNSRETEMGALFHHAATYHRAKAALDEDGRLAALQLRAVSPASPEQWEPGYFDRADR
                     MDYSTTEAINAREFTYRAPHLDIGWVRHETGVPTGWYRAVSYIPNVFAVESIIDEAAH
                     LGKRDPLLFRLASMHDQPRHAAVVRRAAERAGWHDPLPAGVALGIATNQAYGSYIAVV
                     ARVAKKDGAIVIEKLTCVADCGLAVSPGGVEEQLYGGLMWGLGHASFDQIEIRNGRVV
                     QHNFDTYRVARMSDMPAVDIDIVQGDLAHPGGVGELSSPAVTPAIANAIYRLTGERKR
                     STPFDLRAI"
     gene            2688..>3314
                     /locus_tag="VKJ77_01855"
     CDS             2688..>3314
                     /locus_tag="VKJ77_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC44049.1"
                     /translation="MAGRVYAQLREAIMTGRFAPGQALSLRGVAEAVGSSTMPVRAAL
                     TRLQAEGALIDGPGRALMVPPMTLDLLEELRDVRIALEGCVAKRAASRMTKDHLNALQ
                     AVFDTMDVHVEAGDVPAYLRSNFEFHIAIYTHGASDLTLATIQNLWMRIGPFLNLVAP
                     DIPHMRLSMAAHRKIVDALWKGDGEGARAGIEEDIGGAAADLQERLQSR"
BASE COUNT          638 a          986 c         1118 g          572 t
ORIGIN      
        1 agcccgggca gttgatgtcg gcggcggcgt tcctcgacgg gaagcccgaa gtcaacgacg
       61 aaacgatttc cgcagccatg tcgggcaacg tgtgccgctg cggcacatat gcgcgcattc
      121 gaagggcgat caaacgcgcc gctcccgaac tcctgtcgtc aaagaaggag gcatgatgcg
      181 cgacgcaagc aaaccggcgg tggcactggt cgagtctcgt gaggtctccc gccggcgttt
      241 cctgaagcag ggttcggcgt tgctcgccgc gggtgtcgca gtcggctttc gtctgccaga
      301 cgcgcgggcg aacgaagcat cgggcggcgc tgcgtcaacg aacgcgacca acgaattcga
      361 gcccaacgca tgggtccgcg tattgcccga cgatacgatc aagctcgtgg tccacaagca
      421 tgactcgggc accggaacgc ggaccgcgct ggcagcgatc gtggcggaag aactcgatgt
      481 cgacccgttc gcggtcgacg tgatcacgcc cgagaatccg ttctacgcgg tctacattca
      541 tccattgtgg aaggtgttct caacgggtgg cagtaccagc gtctcgcttg aatacgatcg
      601 ccttcgaatg gcaggcgcaa ccgcaagagc gatgctcgtc gccgcagccg cgaaccagtg
      661 gaacgtgccg gctgcatcat gctcgactgc gagcggctat gtcgagcacg cgccgagcgg
      721 ccgcagagcg aactatggat cgctggctga agccgccgcg cgcgtgcctg tgccgagcgc
      781 cattgcgctc aaggaccccg cgcagttcag gtacatcggc aagctgcgga agaagcgcgg
      841 ggcggcgcag aaggccgcag ggacgttcca atacagcatc gacgtcgatc tgcccggcat
      901 gctggtcgcc gtgatcacgc gcgcgccggt gatcgacgcg cgcgtgcgca gcgtcgattc
      961 gtccaacgca ctcaagctgc cgggcgtgcg cagtgtgatc gagattccgg ggcggccgga
     1021 tgtgctgggc ggcaatcagg cgggcgtagc gattcttgcg gatgactact ggtcggcgca
     1081 tcagggacag gcggcgttgc agatcgagtg ggacgacagc ctcttcgaaa gcttcaacag
     1141 cgacgcgctc gcggctcatc aggctgcgtg gctcgacagc ccggcggcgc atgtcgtgcc
     1201 gaccattcaa tccggcgacg caaaggccgc gtggacgcat ccggctcgcg tgatagaagc
     1261 atcgtattcg atgccgtaca aagcccagag cccgatggaa cccgtcaacg tcaccgcatg
     1321 ggcaagcaag gatgcaattg cctactgggg tggtatccag gtcccttcaa cggcgcagga
     1381 agccgccgaa gtgatcggtg gcttcaaggg ggatcaggtc acggtgcacg agctcgtatc
     1441 gggcggcagc ttcggtgcgc gcgaatcgaa atactggctg ctcgaagtca cttacctcgc
     1501 ggtaaagacc ggcaaaccgg tcaagctgat gaacagccgc gagaccgaga tgggtgcgct
     1561 gtttcatcac gcggctacgt accatcgcgc gaaggcggcg ctcgacgagg acggccgcct
     1621 cgccgcgttg caactgcgcg ccgtctcgcc ggcttcgccg gagcaatggg agccgggtta
     1681 tttcgatcgc gcggatcgca tggactacag caccaccgag gccatcaatg cgcgcgagtt
     1741 cacgtaccgc gcaccgcatc tggacattgg ctgggtgcgt catgaaacgg gcgtcccgac
     1801 gggttggtat cgggcggtca gctacatccc caatgtgttc gcggtcgagt cgatcatcga
     1861 tgaagctgct cacctcggca agcgagaccc gttgctgttc cgcctggcta gcatgcacga
     1921 ccagcctcgc cacgcggcgg tcgtgaggcg agcagcggag cgcgcgggat ggcatgaccc
     1981 gttgcccgca ggcgtggcgc tcggcattgc gaccaatcag gcctatggca gttatatcgc
     2041 ggtcgtggcg cgggttgcga agaaggatgg agcgatcgtc atagagaagc tcacctgcgt
     2101 ggcggattgc ggtctggcgg tttctcccgg tggcgtggag gaacaactct atggtggcct
     2161 gatgtggggc ctcggacacg cgagcttcga ccagatcgag atccgtaacg gacgtgtcgt
     2221 gcagcacaac ttcgatacgt atcgggtggc gcggatgagc gacatgccgg ccgtcgatat
     2281 cgacatcgtg cagggggacc tcgcccaccc gggtggcgta ggtgagctgt ccagtccggc
     2341 ggtgacgccg gcgattgcca atgccattta tcgtctgacc ggggaacgca agcgctcgac
     2401 tccgtttgac ctgcgcgcca tttgaccggc gcgatttgca gcaccggagt catgacaaaa
     2461 aaaccgcacg aggagcgccc cgggtggcgg gcgacgcgac tgccgcgaca agctcacggc
     2521 agtcgcgttt tcccctagta tttgaaggtt gactaagagt cgcaagggca ccaaacttca
     2581 tcttacggtg tgatcacagg tcacatatct cgtaaggagt tgtttaattg acaacacgtg
     2641 aaacaagcgc ggacgcgctg ccgcttgagc tggtggcacg cgagaccatg gcgggccgcg
     2701 tctacgcgca gttgcgggag gcgatcatga cgggacgctt tgcacccggt caggcgctga
     2761 gcttgcgcgg ggttgccgaa gcagtcggct catcgaccat gccggtgcgc gccgcgctca
     2821 cccggctgca agccgaaggc gcgttgatcg atggtccggg ccgcgcgttg atggtgccgc
     2881 ccatgacgct ggacctgctc gaagagctgc gcgacgtgcg gatcgccctt gaaggctgcg
     2941 tggcgaagcg ggcagcatcg cggatgacga aggaccattt gaacgcgctg caagcggtgt
     3001 tcgacacaat ggatgtccat gtggaagccg gcgatgtacc cgcgtacctg cgcagtaatt
     3061 tcgaattcca tatagcaatc tatacgcatg gcgcaagcga cctgacgctc gcgaccatcc
     3121 agaatctctg gatgcgtatc ggcccgttcc tgaacctcgt ggcaccggac attccgcata
     3181 tgaggttgtc gatggcggcg caccgcaaga ttgtcgatgc cctctggaag ggcgacggag
     3241 aaggcgcgcg ggcgggcata gaagaggaca tcggcggcgc cgctgcggac ttgcaggaac
     3301 gcttgcagag cagg
//
LOCUS       DATGBK010000128         1547 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_209749, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000128 DATGBK010000000
VERSION     DATGBK010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209749"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..480
                     /locus_tag="VKJ77_01860"
     CDS             <1..480
                     /locus_tag="VKJ77_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HMC44050.1"
                     /translation="INMIYEGTNSIQALDLLGRKILGDMGAKLKKFGKLVTDFVEEEG
                     VKPEMQEFINPLADIGDKVQKLTMEIGMKAMQNPDEVGAAAVPYMRTVGHLVFSYFWA
                     RMARIALDKEAEGDPFYKAKLATARFYFAKLLPETASTIRAARAGSKTLMDYDEALF"
     gene            565..>1547
                     /locus_tag="VKJ77_01865"
     CDS             565..>1547
                     /locus_tag="VKJ77_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004537876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HMC44051.1"
                     /translation="MSNLNIRKVAVLGAGVMGAQIAAHLINAQVPVLLFDLPAKEGPK
                     NGIALKAIENLRKLSPAPFGVKDDAQYIQPANYDDDIEKLKECDLVIEAIAERMDWKH
                     DLYKKVSPYIGEKAIFATNTSGLSITELSKGFSDELKARFCGVHFFNPPRYMHLVELI
                     PTDTTQPQILDQLETFLTSVVGKGVVRAKDTPNFIANRVGVFSILAVIAEAEKFGLRF
                     DEVDDLTGARLGRAKSATFRTADVVGLDTMAHVIKTMQDNLPDDPFFALYETPAVLAG
                     LVKNGALGQKSGAGFYKKEGKAIKVLDPKTGTYVDGGGKADELVGRILKRPP"
BASE COUNT          347 a          420 c          478 g          302 t
ORIGIN      
        1 atcaacatga tctacgaagg cacgaattcg attcaggctt tggatctgct cggccgcaag
       61 attctcggcg acatgggcgc gaagctgaag aagttcggca agctcgtgac cgacttcgtc
      121 gaagaagaag gcgtgaagcc ggagatgcag gagttcatta acccgctcgc ggatatcggc
      181 gacaaggtcc agaagctgac catggaaatc ggcatgaagg cgatgcagaa tccggacgaa
      241 gtcggcgccg ctgccgtgcc ttatatgcgg accgtcgggc atctcgtgtt ctcgtatttc
      301 tgggcgcgca tggcacgtat tgcgctggat aaggaagccg aaggcgatcc gttctacaaa
      361 gcgaagctcg ccaccgcgcg tttctacttc gccaagttgc tgcctgaaac ggcatcgacg
      421 attcgcgccg cgcgcgcagg gtcgaagacg ctgatggact acgacgaagc cttgttctag
      481 gcctcttttg cactgcgccg cgttttagct ggtttaaaaa acgcggcgca tcgtcttacc
      541 gaatacctct cccggagaca caacgtgagc aatctgaaca tacgcaaggt ggccgtgctc
      601 ggcgccggcg tgatgggcgc gcagatcgct gcgcacctga tcaacgccca ggtgccggtc
      661 ctgctgttcg acctgccggc taaagaaggt ccgaagaacg gcatcgcgtt gaaagcgatt
      721 gagaacctga gaaagctgtc gcccgcgccg ttcggcgtga aggacgacgc gcaatatatc
      781 cagcccgcga actatgacga cgacatcgag aagctgaaag agtgcgacct cgttatcgaa
      841 gccatcgccg agcgcatgga ctggaagcac gacttgtaca agaaggtatc gccgtacatc
      901 ggtgagaagg cgatttttgc gacgaatacg tcggggctgt cgataacgga gttgtcgaag
      961 ggtttctcgg acgagttaaa agcgcgtttt tgcggcgtgc acttctttaa tccgccgcgc
     1021 tacatgcact tggtcgaact gatcccgacc gataccacgc agccgcagat cctcgaccag
     1081 ctcgaaacgt tcctaacaag cgtggtcggc aagggcgttg tgcgggcgaa ggacacgccg
     1141 aatttcatcg cgaatcgtgt gggcgtgttt tcgattctcg cggtgattgc ggaagccgag
     1201 aagttcggac tgcgtttcga tgaagtcgat gacctcaccg gtgcacgcct gggccgcgcg
     1261 aagtcggcga cgttccgcac ggcggacgtg gtcggcctcg acaccatggc gcacgtcatc
     1321 aagacgatgc aggacaacct gccggacgac cctttctttg ctttgtacga gacaccagct
     1381 gtgctcgctg gtttagtgaa gaacggcgcg ttgggacaga agtcgggcgc tggcttctac
     1441 aagaaagaag gtaaagcaat caaggtgctg gacccgaaga cgggaacata cgttgatggc
     1501 ggcggcaagg cggatgaact cgtcggccgc atcttgaagc gtccgcc
//
LOCUS       DATGBK010000129         2181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_186741, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000129 DATGBK010000000
VERSION     DATGBK010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186741"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..336)
                     /locus_tag="VKJ77_01870"
     CDS             complement(<1..336)
                     /locus_tag="VKJ77_01870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009898901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HMC44052.1"
                     /translation="MTPIQTDLATGDNAGGNPGDDAGDNDWLVSSRAALARAQFAAQA
                     ETVGRVEHVSDGIASVSGLPDVRLNELLRFEGGRLGFALTLDADAIGAVLLDDGDAIS
                     AGSRVTGTGQ"
     gene            complement(333..1067)
                     /locus_tag="VKJ77_01875"
     CDS             complement(333..1067)
                     /locus_tag="VKJ77_01875"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004544795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HMC44053.1"
                     /translation="MHIDWWTLLLQTVNALVLVWLLARFLFRPVAKIVAERQHAAAAL
                     MADATAAKAAALGEQQKAAADSAELAAQRAHLLEAATAEAAQLKTSLENAARTDTEQM
                     RTAAQAAIDASRREAAAADSNRASQFALDVTARLLDRLPAEARIAGFIDGLARELAAL
                     PEATRAQLTGNDEPVHLIVPRALTDDELAACQTAFMQALSHPLQVQVTVDPAVIAGLE
                     LEAPHALVRNSFRHDLAGLKTELLSS"
     gene            complement(1081..1329)
                     /locus_tag="VKJ77_01880"
     CDS             complement(1081..1329)
                     /locus_tag="VKJ77_01880"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HMC44054.1"
                     /translation="MNNLIQVVSILAAALAVSFGAIGPALGEGRAVAAAMDALARQPE
                     SAGTISRTLFVGLAMIETMAIYCLVIALLVLFANPFVK"
     gene            complement(1326..2024)
                     /locus_tag="VKJ77_01885"
     CDS             complement(1326..2024)
                     /locus_tag="VKJ77_01885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004187346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HMC44055.1"
                     /translation="MIASPLVTATLFHIGPVDVSAPVVATWVIMALLAGGAAWYTRRL
                     SLTPSKVQTVLEMLVSTIDDQIRDTMQAEPERYRSLVGTLFLFILVSNWSSLLPGVEP
                     PTAHVETDAALALIVFFATIFYGIRTRGLGRYLATFAEPTWIMIPLNVVEQITRTFSL
                     VVRLFGNVMSGVFVVGIVLSLAGLLVPIPLMALDLLTGAVQAYIFTVLAMVFIGAALA
                     ENSTKTSSKEAGQQ"
BASE COUNT          416 a          669 c          722 g          374 t
ORIGIN      
        1 ttgccccgtt ccggtgacgc gggagccggc ggaaatcgca tcgccgtcgt cgagcaggac
       61 cgcgccgata gcatcggcgt ccagcgtgag tgcaaagcct aaacgaccac cctcgaagcg
      121 cagcaattcg ttcaagcgca catcgggcag gcccgagacg gaggcaatgc cgtcggacac
      181 gtgttcaacg cgcccgacgg tttccgcctg cgcggcaaac tgagcgcggg cgagagcggc
      241 gcggctgctg actagccagt cgttgtctcc tgcgtcgtct cccgggttgc ctcccgcgtt
      301 gtctcctgta gcgaggtcgg tttgaatggg ggtcatgagc taaggagttc cgttttcagg
      361 ccggcgagat cgtggcgaaa actgttgcgc acgagcgcgt gcggcgcttc cagttcgagt
      421 ccagcgatca cggctggatc gactgtgacc tgaacctgta acggatggct gagcgcctgc
      481 atgaacgcgg tttgacacgc ggccagttca tcgtcggtga gcgcgcgagg cacgatcaga
      541 tggactggtt catcgttacc ggtcagttgt gcgcgggtag cctcgggcag cgcggcgagc
      601 tcacgagcca gtccatcgat gaaccccgcg atccgtgcct cggcgggcag gcgatcaagc
      661 agccgcgcgg tgacatcgag tgcgaattgc gacgcgcgat tggaatcggc tgcggcggcc
      721 tcgcggcggc tggcgtcgat tgcggcttgc gcggccgtgc gcatctgttc cgtgtcggtg
      781 cgcgccgcgt tctcgagcga cgtcttgagc tgcgcggctt cggccgtcgc tgcttcaagc
      841 agatgcgcgc gttgcgcggc aagttcagcg ctgtcagcgg cggccttctg ctgttcaccg
      901 agtgccgcgg ctttcgctgc ggtggcatcg gccatcagcg ccgcggccgc atgctggcgc
      961 tccgctacga ttttcgccac cgggcgaaac agaaagcgcg ccagcaacca gacgagcacc
     1021 agcgcgttga cggtctgcag caggagagtc caccagtcga tatgcatgat cagtgcgcgc
     1081 tcacttcacg aacggattgg cgaacaacac aagcagcgcg atcaccaggc agtagatcgc
     1141 catggtctcg atcatcgcca ggccgacaaa cagcgtgcgc gaaatcgtgc cggccgattc
     1201 cggctgtcgg gcgagcgcgt ccatggcggc ggctaccgcg cggccttcgc cgagcgccgg
     1261 tccgattgcg ccgaacgaga ccgcaagcgc tgctgcgaga atgctcacta cctggatcag
     1321 attgttcatt gctggcctgc ctctttgctg gaagtttttg tggagttttc ggctagcgcg
     1381 gcaccaataa agaccatcgc gagaaccgtg aagatgtacg cctgcaccgc gcccgtcaga
     1441 aggtcgagtg ccatcagcgg gatggggacc agcaaccctg cgagcgacag cacgatgccc
     1501 accacaaaga caccgctcat cacattgccg aacagacgta cgactagcga gaaggtccgc
     1561 gtgatctgct cgacgacgtt gagcgggatc atgatccacg tgggttcggc aaacgtggcg
     1621 aggtagcggc ccagaccacg cgtgcgaatg ccgtagaaaa tggtcgcgaa aaatacaatc
     1681 agggccagcg cggcatcggt ttccacgtga gcggtggggg gctcgacacc cggaaggagc
     1741 gacgaccagt tgctgaccag gatgaacaga aagagcgtgc cgaccagcga gcgatatcgt
     1801 tcgggctcgg cttgcatggt gtcgcgaatc tggtcgtcta tggtgctgac cagcatttcg
     1861 agcaccgtct gtactttcga tggcgtgagc gacaagcggc gcgtgtacca cgcggcacca
     1921 cctgcgagca gggccatgat gacccacgtt gccactaccg gtgccgatac gtcgaccggt
     1981 ccgatatgga acagcgtggc agtgacgagc ggcgaggcaa tcatggcgtc acctggacgc
     2041 gtcgcaggat aaagccgcgc gcgagcagca atccggccgc gccgcatagc agcggccatg
     2101 cgcccagttt cgccagcaca ccgaacagaa cggctacgcc tgcgagacgt agcaattgca
     2161 gaccgattgc cttggccggc g
//
LOCUS       DATGBK010000130         4374 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_232860, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000130 DATGBK010000000
VERSION     DATGBK010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4374
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232860"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1159
                     /locus_tag="VKJ77_01890"
     CDS             <1..1159
                     /locus_tag="VKJ77_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44056.1"
                     /translation="DVPGLRREQDLVREQDLRSLLEYCRVNGRFPPSATGGPEDTYNP
                     FVQVTTDGKPWMNEGNHRVMVADILGWEYVPVLVRYFAGGEGVDGALSPMRVREYDRA
                     ARAGGHTLTNYGGKRVGADHVPVELTDEIEAQVLARMPRYAVLEIKDTLTAAFTDMGR
                     RSALETLFFDAAKKALEGYGEFDLEDANGNVVGSFSYRKDPSDLPPLVDGDGAIRMVL
                     DLETNVRVSERRELAAEAIAVAQELAGAAMIHDDVQVSFAHSAGIVKVSSSGYGPIAH
                     AEVALRQLHLPVLDVKDLMRLNRDRAERGEKRAEPSSAWTTTRVGDMWFEGDVLTKEV
                     FVRDPMSDEPGVYRKVWFGDLDGTGVSRLELSDRDGRVLDADMRVADEVLP"
     gene            1156..2994
                     /locus_tag="VKJ77_01895"
     CDS             1156..2994
                     /locus_tag="VKJ77_01895"
                     /inference="COORDINATES: protein motif:HMM:NF037897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44057.1"
                     /translation="MSGGSVVNGVKWPAFLENGEKIAAYIAEVSSDYVDAKFVVEYYT
                     GAGAVLRFVPISQLQEGPADSNLSSAEKARKYEALPLETMPPLVCEGGVVDDGNHRLR
                     CARAKGATHLWCYDVLDEEAVQELMLSSIKPALNDVTYIEEVERSRMYNELRELAIAT
                     PEYAALEAAEAVAIVAAQKHDSLIKAEALRLFDEILKKPGSEEFFFEGLDAEKREALR
                     QTMARELRMKQARENLGPDKWPAVMAARDALRTFVTDYFDAYMPPENPHADCVRQQRD
                     QQHGPAFKRWFEGSKVVSADGKPLVALHATAAEFDQFVTGDDECLRVGRMPAAGRRFN
                     SNYSGPMGSWFATPPVEDNNYEVGNVECTVEGFVASLVEDTGYKPGSQVLPVYLNIRN
                     PMEFEGFEDFQDQRDEYPNLYEFKQAMLRDGHDGFVIRSCYTDGDCVRDDWVAFDPHQ
                     IKSALGNSGAFDPASSSLVDSHGRYLVLTIFDTSTAAFTDIGRDAELARVVREALAGD
                     TAPVGAVALTDLNGNVVGTMARSDFVSAAAPSNGGVQIVLDVDAISPEVTELLVAQVE
                     GGQLDAPLCDAHGVWFGVVRPLAALAPEAMLAATLSRSDVEQVCEV"
     gene            2991..>4374
                     /locus_tag="VKJ77_01900"
     CDS             2991..>4374
                     /locus_tag="VKJ77_01900"
                     /inference="COORDINATES: protein motif:HMM:NF037897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44058.1"
                     /translation="MTAIRKAVTQSEAFQRWFGESKVVGEDGQPMVVFHGSSHPSWQY
                     GRDRFNTRNGMGEGAYFTPDAHSAADYAAMDAEVGDGNPLLVPVYLSLQNPKIFRGGL
                     DSQSISVEQKRELLALGHDGVFGYSDKGVLLEIVVFFPERIKSAIGNSGVFDLRSTSI
                     TDGESARAVAALRPSLDRWASAGAVMGETGAPRVFYHGTQTPDLLDCFVAGGGEQSVQ
                     SGDAYGVAVYLTSDPYEASHFAKGGGAVFPVYARGELLDVDAELTAPQAARVTRLANE
                     IMLPSDKARFEIGRTRRRFGDVQHAREFFDAQRENWVAFGDGMDRARPEAIVEGDDFV
                     VEFTDFDAPVAISSGKDAFTLFNAVGWSNLSAAGFDGVVMERGDGRKWVVMHRPDGNI
                     KSSVGNSGAYDGLSASLTDQSPRYLVLRIDTMQTTAFEDLGGAAELARIARECISVRA
                     PEPGGEVALRD"
BASE COUNT          818 a         1140 c         1509 g          907 t
ORIGIN      
        1 ggatgtgccg ggcctgcgcc gcgaacagga tttggttcgc gagcaggacc tgcgctcgtt
       61 gctggaatac tgtcgcgtca acggccgttt tccgccgtcg gcgaccggcg gcccagaaga
      121 cacctacaac ccattcgtgc aggtcacgac cgatggaaag ccgtggatga acgaaggcaa
      181 ccatcgcgtg atggtggctg acattctcgg ctgggaatac gtcccggtgt tggtgcgtta
      241 ctttgccggt ggcgaaggtg tggacggcgc gctctcgcca atgcgcgtgc gtgagtacga
      301 ccgggctgcg cgcgcaggcg ggcatacgct gacgaactac ggcggcaagc gcgttggcgc
      361 tgatcacgtg ccggtggagc tgaccgacga gatcgaggcc caagtgctgg cgcgcatgcc
      421 acggtacgcg gtgctggaga tcaaggacac gctgaccgcc gctttcacgg acatgggccg
      481 ccgcagcgcg ttggagacgc tgtttttcga cgcggcgaag aaggcccttg agggctatgg
      541 agaattcgat ctggaagatg ccaatggtaa tgtggtcggc agcttcagct accgtaagga
      601 ccccagtgac ttgccgccat tagttgacgg tgatggggcg atccgcatgg tgctcgatct
      661 ggaaacgaat gtgcgcgttt ccgagcggcg cgagctggcc gccgaggcta ttgctgtggc
      721 gcaggaactg gccggtgccg cgatgatcca cgacgacgtg caagtgtcgt tcgcgcactc
      781 ggccggtatc gtcaaggtct cgtcgagtgg ctatgggcct atcgcgcacg ccgaggtcgc
      841 gctgcgccag ttgcatttgc cggttctcga cgtgaaggac ttgatgcgct tgaatcggga
      901 tcgcgcggag cgtggagaga agcgtgctga accgagttct gcgtggacga caacacgtgt
      961 tggcgatatg tggttcgagg gcgatgtgct gacgaaggaa gtgtttgtgc gcgacccgat
     1021 gtcggacgag ccgggcgtgt accgcaaggt ctggttcggt gatctggacg gcaccggcgt
     1081 ctcgcggcta gaactgtcgg accgcgacgg gcgcgtgctt gacgctgata tgcgtgttgc
     1141 cgacgaggtg ctgccatgag cggaggttcc gtggtcaatg gcgtgaagtg gcccgcgttt
     1201 ttggaaaatg gggaaaagat tgcggcgtat atcgctgaag tatcatcgga ctatgtagat
     1261 gcgaagttcg ttgtcgaata ctacactggt gccggcgctg tgttgcggtt cgttcccatt
     1321 tcccaattgc aagagggtcc cgcagacagc aatctatcct ccgctgaaaa ggcgcggaaa
     1381 tatgaggctc tgccactaga gacgatgcct ccgcttgtct gcgaaggtgg tgtggtggac
     1441 gacgggaatc atcgactgag gtgcgcccgc gccaagggag caacccatct atggtgttat
     1501 gacgtgcttg atgaggaggc cgttcaagag ctgatgttga gttctattaa gccagcgttg
     1561 aacgacgtga cctacattga agaggtcgag cgtagtcgga tgtacaacga gctgcgtgag
     1621 ctggccatcg caacaccaga gtatgcggca ttggaggcag cggaagccgt agccattgtc
     1681 gcggcgcaga agcacgacag tctcatcaaa gccgaggcat tgcggttgtt cgatgagatt
     1741 ctgaaaaagc ccggctcgga agagttcttc ttcgaaggtc tcgatgcgga aaagcgcgaa
     1801 gcgctgcgtc agacgatggc cagagagttg cgcatgaaac aggccagaga gaatcttggt
     1861 cctgataagt ggcccgctgt gatggccgca cgcgacgcgc tgcgcacgtt cgtcaccgat
     1921 tactttgatg cgtatatgcc gccggagaat ccgcacgctg attgcgtgcg tcagcagcgc
     1981 gatcagcagc atggcccggc gtttaagcgc tggttcgagg gtagcaaggt ggtgagcgct
     2041 gatggcaagc cgcttgtcgc gctgcacgcg accgctgccg aattcgatca gtttgtgacc
     2101 ggggacgacg aatgcttgcg tgttggcagg atgccagcgg ccggccgccg gttcaattcc
     2161 aactacagcg gcccgatggg ctcgtggttc gccacgccac cggttgagga caacaactac
     2221 gaagtgggca atgttgagtg cacggtcgaa gggttcgtgg cgtcgctggt tgaagacacc
     2281 ggctacaagc cgggatcgca ggtgctgcct gtgtacctca atatccgcaa cccgatggag
     2341 ttcgaagggt tcgaggattt tcaggatcaa cgagacgagt atcccaatct gtacgagttc
     2401 aagcaggcca tgctgcgaga tggtcacgat gggttcgtga tccggagctg ctatacggac
     2461 ggggattgcg tgcgtgacga ctgggtggct ttcgatccac accaaattaa gtcggcgttg
     2521 ggaaacagcg gtgcattcga tccggccagc agcagccttg tggacagcca tgggcggtat
     2581 ctggtgctga cgatcttcga taccagtacg gctgctttca ccgacatcgg tcgggatgcc
     2641 gaactcgcgc gcgtcgtgcg cgaggcgctg gccggtgata ccgcgcctgt cggtgctgtt
     2701 gcgctgaccg atctgaacgg taacgtggtc ggcaccatgg cgcgctctga ctttgtgtcg
     2761 gcggcggcac caagcaatgg tggtgtgcag atcgttcttg atgttgatgc catctcgccc
     2821 gaggtcaccg agttgctagt agcgcaggtc gagggtggcc agctcgatgc gccgttgtgc
     2881 gacgcccacg gcgtatggtt cggtgtggtg cgcccgttgg cggcgcttgc acctgaggct
     2941 atgttggccg cgacgctgag caggagcgat gtagagcagg tctgcgaggt atgacggcaa
     3001 tccgcaaggc ggtgacgcaa tcagaggcat ttcagcggtg gtttggagag agtaaggttg
     3061 tcggtgagga tggtcagccg atggtggtgt tccacggctc gtcgcaccct tcgtggcagt
     3121 atggccgcga ccgttttaat actcgcaacg ggatgggcga gggtgcctat tttacgcctg
     3181 atgcgcattc ggccgctgat tatgcggcta tggatgcaga agtcggtgac ggaaatccat
     3241 tgttggtacc ggtctacctc tcgttacaaa atccgaagat ttttcggggc ggactcgaca
     3301 gtcaaagtat ctcggtcgag cagaaacgag agttgcttgc gctgggccat gatggtgttt
     3361 tcggttactc agacaaggga gtccttctcg aaatcgttgt gtttttcccg gagcgcatta
     3421 agtccgcgat tggcaacagc ggggtgttcg atttgcggag cacgtctatt acggacggtg
     3481 agtcggcaag ggctgttgct gcgctacgac cgagtttgga ccgctgggcc agcgctggcg
     3541 cggtgatggg ggaaaccggt gcaccacgtg ttttctacca tggcacacaa accccagatt
     3601 tgctcgactg cttcgtcgcc ggtggcggcg agcaatccgt gcaaagcggt gacgcatacg
     3661 gcgtcgccgt ctacctcacc agcgatccct acgaagcgtc acacttcgcg aaagggggtg
     3721 gtgctgtctt cccggtctat gcgcgcggcg agctgctgga cgtcgatgct gagctgactg
     3781 cgccgcaagc ggcgcgcgtc acgcgcttgg ccaacgagat catgctgccg tcggacaagg
     3841 cgcgctttga gatcggtcgc acgcggcgac gtttcggcga cgtgcagcat gcccgggagt
     3901 tcttcgacgc gcagcgcgag aactgggtgg ccttcggtga cggcatggac cgcgctcgcc
     3961 ctgaggccat tgtagagggt gatgatttcg tggtggagtt caccgatttc gatgcgcccg
     4021 ttgcgatcag cagtggcaag gacgcgttca cgctgtttaa cgcggttggc tggagcaatt
     4081 taagcgcggc cggttttgat ggcgtggtga tggagcgggg agatggccgc aagtgggtgg
     4141 tgatgcaccg cccggacggc aatatcaagt cttccgtggg aaacagtggc gcatacgacg
     4201 gcctgagcgc atcgctgacc gaccagagtc cgcgttatct cgtactgcgc atcgacacga
     4261 tgcagacgac ggctttcgag gaccttggcg gcgcggcgga gctggcgcgc attgctcgcg
     4321 agtgtatttc cgtgcgcgcg cccgagccgg gaggcgaggt cgcactgcgc gacg
//
LOCUS       DATGBK010000131         2681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_24787, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000131 DATGBK010000000
VERSION     DATGBK010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24787"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..638)
                     /locus_tag="VKJ77_01905"
     CDS             complement(<1..638)
                     /locus_tag="VKJ77_01905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44059.1"
                     /translation="MDADQGLPLPQRYWAILVVALGITLAVLDGAIANVALPTIARNL
                     NASPADSIWVVNAYQLAITVSLLPLASLGDRIGYRRVYMAGLALFTIASFGCALSGSL
                     TSLAIARVIQGFGAAGIMSVNTALVRMIYPNEHLGRGVSINASVVAISSVIGPTIASG
                     VLAIATWPWLFAINVPIGIAAYAAGWKALPRTPGHRQPYDYLSALMNAAVFGL"
     gene            complement(771..1274)
                     /locus_tag="VKJ77_01910"
     CDS             complement(771..1274)
                     /locus_tag="VKJ77_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HMC44060.1"
                     /translation="MADFRIWSDEFAANGYLSKNHEFDQQAFGVDGENISPALQWDGV
                     PPDAKSLALTVYDPDAPTGSGFWHWIVVNIPVDTRSLPQNAGKADGSLLPAGALQMRN
                     DYGTVGFGGAAPPRGDKPHRYIFRIHALKADHLSLDVSATNAVARFMTHLNEIDSATY
                     TGLYQLK"
     gene            1639..>2681
                     /locus_tag="VKJ77_01915"
     CDS             1639..>2681
                     /locus_tag="VKJ77_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HMC44061.1"
                     /translation="MFDLAPVSLWLEDFSAVREVFEGWRAQGIVDLRAFLLEDLTRIA
                     ECSSRIRVIKVNRRTLALFGAKDIDHLVRNLGAVFRDDMLLTHVDELEQLWSGKPAFV
                     SKTVNYALDGKRLDVLLKAVILPGHEGTWDRVLVTVEDITELENVRRKAALSELYARG
                     LFEHSPVSLWVENFSSVKALLDDIRERGIVDFRTFTNVHPEFVERCMQEIHVLDVNQH
                     TLTMFGAADKAALLSRLGDVFRDEMVGHFQEQLIDLWENRLFHQREVVNYSLEGQQLH
                     VHLQFSVFPGHEADWDLVLVALTDITARKKAEAYLEFLGKHDALTKLKNRSFYIDEMN
                     RLERKGPFPVTAVA"
BASE COUNT          531 a          772 c          860 g          518 t
ORIGIN      
        1 agaccaaaca ccgccgcgtt catcagcgcg ctgagataat cgtaaggttg ccgatgtccc
       61 ggcgtgcgcg gcaacgcttt ccaaccggcg gcgtatgcag cgataccgat cggcacgttg
      121 atcgcaaaga gccacggcca cgttgcgatc gccagaacgc cggaggcaat cgtgggccct
      181 atgaccgacg agatcgccac cacggaggcg ttgatgctga cgccgcggcc caggtgctcg
      241 ttgggataga tcatgcgcac gagcgccgtg ttgacgctca tgatgcccgc cgcgccgaac
      301 ccctgtatca cccgcgcaat cgccagcgac gtcagcgacc cggagagcgc gcagccgaac
      361 gatgcaatgg tgaacagcgc gagtcccgcc atgtacaccc gccggtagcc gatccggtcg
      421 cctagtgagg cgagcggcag cagcgagacc gtgatggcga gctgatacgc gttgaccacc
      481 cagatcgagt cggcaggact ggcgttcagg ttgcgggcga tggtgggaag tgcgacgttg
      541 gcgatggcgc cgtcgagcac ggcgagcgta atgccgagtg ctacgaccag gatggcccaa
      601 tagcgctggg gaagaggaag gccttggtct gcgtccatcg gaagggaaga ggaggggagc
      661 ggcgaagtgt aaggctcacg cctttcagat ggtttaccag aagacccgtt caaaacgcgc
      721 aaggccgcgc gacggcatgc aagccggtgc gcgcggcctc gatccggcgc ttatttcaac
      781 tgatacagcc ccgtataagt cgccgaatcg atttcgttca gatgcgtcat gaaacgggcg
      841 accgcgttgg tggccgagac atcgagcgac aggtggtccg ctttcagtgc gtgaatccgg
      901 aagatgtacc ggtgcggttt gtcgccgcgc ggtggcgcag cgccgccgaa accgaccgtg
      961 ccatagtcgt tgcgcatttg cagcgcgccg gcgggcagca ggctgccgtc ggccttgccg
     1021 gcgttctgcg gcagcgagcg ggtgtccacc gggatgttca ccacgatcca gtgccagaag
     1081 ccactgccgg tgggcgcgtc ggggtcgtag acggtgagag cgaggctctt ggcgtcgggc
     1141 ggcacgccgt cccattgcag cgcgggcgag atgttttcgc cgtctacgcc gaatgcttgc
     1201 tgatcgaact catgattctt cgaaagatat ccgttggccg cgaattcatc ggaccagatg
     1261 cgaaagtcag ccatgggaac gtgtctcctt tgacgaggtt taaagggatt tgaggggttt
     1321 gatatcccgg cacctgccgg cgttcagcca tttgcacagg tgcgtcgagg ccgctaggca
     1381 tgcggccctt tcaacgcttt cgtgcagcaa ccatgcctga actccttcat tgttgctcaa
     1441 cgccgaaacg tttgcgttac cccggttaat tcctttcagc ttatttccgc cacgtctgcg
     1501 cataaaatgg cgaaaccgga acatatcaag cttgattatc ggaaaaggat ggacatgccg
     1561 aacaaccagg ggcgcgtttt gcagagtgtg gcgacggcat cgacgagtgg atcgggcgca
     1621 ccggcggacg atgccgatat gttcgacctc gcgcccgttt cgctgtggct cgaagatttc
     1681 agcgccgtgc gcgaggtgtt cgaaggctgg cgcgcgcagg gcattgtcga cttgcgcgct
     1741 ttcctgctcg aggacctgac ccggattgcc gaatgctcgt cgcgcatccg ggtgatcaag
     1801 gtcaaccggc gcacgctcgc gctgttcggc gcgaaggata tcgaccatct ggtgcgtaat
     1861 ctcggcgctg ttttccgcga cgacatgctg ctcacccacg tggacgaact cgaacaatta
     1921 tggtccggca aaccggcgtt cgtgagcaag acggtgaact acgcgctcga cggcaagcga
     1981 ctcgacgtat tgctgaaagc ggtgatcctg cccggccatg aaggcacctg ggatcgcgtg
     2041 ctggtgaccg tggaagacat tacggaactg gagaatgtgc gccgcaaggc cgcgctgagc
     2101 gagctttatg cgcgcggtct gttcgagcat tcgcccgttt cgctgtgggt tgaaaacttc
     2161 agctccgtga aggcgctgct ggacgatata cgtgaacgcg ggattgtcga cttcaggacg
     2221 ttcacgaatg ttcatccgga atttgtcgag cgctgcatgc aggaaattca cgtgctcgac
     2281 gtgaatcagc acacgctgac catgttcggc gcagcggata aggccgcatt gctctcgcgt
     2341 ctgggcgacg ttttccgcga cgaaatggtg ggccatttcc aggaacagct tatcgattta
     2401 tgggagaacc gcctgttcca ccagcgcgag gtcgtcaact attcactgga agggcagcag
     2461 ttgcatgtgc atctgcaatt ctcggtgttt cccggccacg aagccgattg ggatctcgtc
     2521 ctcgtcgcgc tcaccgacat caccgcgcgc aagaaagcgg aggcgtacct ggagtttctc
     2581 ggcaagcacg acgcgctgac gaaactcaag aaccgctcgt tttacatcga tgaaatgaac
     2641 cggctggagc gcaaaggccc gttcccggtg accgccgtgg c
//
LOCUS       DATGBK010000132         1741 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_279088, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000132 DATGBK010000000
VERSION     DATGBK010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279088"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1741)
                     /gene="fixL"
                     /locus_tag="VKJ77_01920"
     CDS             complement(<1..>1741)
                     /gene="fixL"
                     /locus_tag="VKJ77_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen sensor histidine kinase FixL"
                     /protein_id="HMC44062.1"
                     /translation="GHPEILYMNWYTAQHKPRWPNTPLPVLGSRLAKPTDAQMDDAVQ
                     SAFDEARTSRRQVYSPLLYDDLGNGYITLQTPVYRDRDFLGSIAAVFSIEGILKHDIP
                     SELSAKYKISITDLNNRELATTSSRPRLPRDMFYDLPLDPPGQGVSVRVYSYPQLTNF
                     TNNTLVWLVAGLSCFVLWSLWSLWKHTRQRFEAQQALYAEAFFRRAMENSVLIGMRVL
                     DMHGRITHVNPAFCRMTGWDESDLVSKVAPFPYWPKDAYPEMQRQLDMTLRGKAPSSG
                     FELRVRRKDGSFFHARLYVSPLIDSSGRQTGWMSSMTDITEPRRAREDLAAAHERFTT
                     VLESLDAAVSVLAADEAELLFANRYYRHLFGIRPDGHLELAGAGFDTAQTSSDSIDMV
                     DTYAGLPATALTESTSDAQEVYVEGIQKWFEVRRQYIQWVDGHLAQMQIATDITTRKQ
                     AQELADQQEEKLQFTSRLMTMGEMASSLAHELNQPLAAINNYCSGCVALVKSGRMSQE
                     ALLPVLEKTAQQAVRAGMIIKRIREFVKRSEPKRQPTRVADIVADAVGLAEIEARKRK
                     IRILTEIRSRMPVI"
BASE COUNT          343 a          516 c          538 g          344 t
ORIGIN      
        1 ggatcacggg catgcgcgag cggatctcag tgagaatgcg aatcttgcgt ttgcgcgctt
       61 cgatttccgc gaggccgacg gcgtccgcga caatatccgc tacgcgcgta ggctggcgtt
      121 tcggttcgct gcgcttcacg aattcccgga tgcgcttgat gatcatgccc gcgcgcaccg
      181 cttgctgcgc ggttttttcg agcacgggca acagcgcctc ctgcgacatg cggcccgatt
      241 tgaccagcgc gacgcaaccc gaacaataat tattgatcgc ggccaaaggc tgattcaact
      301 cgtgcgcgag cgacgacgcc atttcgccca tcgtcatcaa acggctggtg aactgcagct
      361 tttcttcctg ctgatcggcg agttcctgcg cctgcttgcg cgtggtgatg tcggtcgcaa
      421 tctgcatttg cgcaagatgg ccgtccaccc attgaatgta ctggcgacgc acttcgaacc
      481 acttctggat gccttccaca tacacttcct gcgcgtccga ggtgctttca gtcagcgcgg
      541 tggcgggcag gccggcgtag gtatcgacca tatcgatgga gtccgacgac gtttgcgccg
      601 tatcgaagcc cgcacccgca agttcgaggt gtccgtccgg gcgaatcccg aacaagtgcc
      661 ggtagtagcg attcgcgaac agcagttcag cttcgtcggc ggcaagcacg gataccgcgg
      721 cgtcgagact ttccagcacg gtggtgaagc gttcatgcgc ggcagcgaga tcttcgcgag
      781 cgcggcgcgg ctcggtgatg tcggtcatcg acgacatcca gccggtctgc cggcctgaac
      841 tatcgatcag cggcgagaca taaagccgcg cgtggaagaa cgaaccgtcc ttgcggcgca
      901 cacgtagttc gaagccggac gaaggcgcct tgccgcgcaa agtcatatcc agttgccgct
      961 gcatttccgg atatgcgtct ttcggccagt acggaaacgg cgccactttg gacacgagat
     1021 cgctttcgtc ccagccggtc atccggcaaa acgcgggatt aacgtgcgtg atccggccat
     1081 gcatgtcgag cacgcgcatg ccgatcaaca cggaattttc catcgcgcgg cggaagaacg
     1141 cctcggcgta gagcgcttgt tgcgcttcaa aacgttgccg cgtgtgtttc cagaggctcc
     1201 acaagctcca caacacaaaa cacgacaagc cggcaaccag ccacaccagc gtgttgttgg
     1261 tgaaattcgt gagttgcgga tacgaataaa cgcgcaccga taccccctga cccggcgggt
     1321 caagcggcaa gtcgtagaac atgtcgcgcg gcagacgcgg ccggctcgag gtcgtggcga
     1381 gctcgcgatt gttcaggtcg gtaatcgaaa tcttgtactt ggcggagagt tcgctgggaa
     1441 tgtcatgctt gagaatcccc tcgatggaaa acaccgccgc aatggacccg agaaaatcgc
     1501 ggtcgcgata aaccggcgtc tgcaacgtga tgtagccgtt gcctaaatcg tcgtacagaa
     1561 ggggggagta gacctggcgg cggctggtgc gggcttcgtc gaacgcggac tggacggcgt
     1621 catccatctg cgcgtccgtc ggcttggcga gtcgcgagcc aagcacgggc agcggtgtat
     1681 tcggccagcg cggcttatgc tgcgccgtgt accagttcat gtagaggatc tcgggatgcc
     1741 c
//
LOCUS       DATGBK010000133         1667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1654, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000133 DATGBK010000000
VERSION     DATGBK010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1654"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..962)
                     /locus_tag="VKJ77_01925"
     CDS             complement(<1..962)
                     /locus_tag="VKJ77_01925"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44063.1"
                     /translation="MFEAKDSGFVLDRSAPIATTSRRRWVIVASLFLFMAINFADKAV
                     LGLVALPLMRDMQLTHAQFGIVGSAFFLLFALSGIGVGLVADRLNVKWLMAGLALVWA
                     VTQLPLAWPTSFAVLLACRILLGAGEGPASPLALHVVYTWFEDHERALPTTIVQQGAT
                     TGIILAGPVLTFIAQRWYWHAAFLSLGVVGVMWTILWLGVGKSGDAHRRQPIRDALQA
                     GWAPVRSSVSYRRLLTDRTVIGVLLQGLVGYSVIAIGVTWVPSYFRVALGFSATDAGW
                     LFALQVAAQIPIGLALAMLSHRMLARGVSSRLARGALVSSACVA"
     gene            1224..>1667
                     /locus_tag="VKJ77_01930"
     CDS             1224..>1667
                     /locus_tag="VKJ77_01930"
                     /inference="COORDINATES: protein motif:HMM:NF012354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44064.1"
                     /translation="MHEINSRRLSHVVALAEEGSFARAAGRVHLSQPALSRSIQALED
                     ELGMKLFDRAARGVALTAAGRLLVERARRVLFETRCMFRDVELLKAHELGEVKIGLGP
                     YAAVVLLPDLLVEFSRRFPKIKVLIELSEGDELMQKLRAERVDFVV"
BASE COUNT          351 a          489 c          516 g          311 t
ORIGIN      
        1 ctcgcgacgc atgcgctgct gaccagtgca ccacgcgcca gccgcgacga taccccgcgc
       61 gcaagcattc gatgcgacag catggccagc gcgagcccga tggggatttg cgccgccact
      121 tgcagcgcaa agagccagcc ggcatcggta gcgctgaacc caagcgctac ccgaaaatag
      181 ctgggtaccc aggtcactcc gatcgcaatc accgaatagc cgacaagtcc ttgcagcagc
      241 acgccgatta cggttcgatc agtgaggagg cgccgataac tcacactcga gcggaccgga
      301 gcccagccag cctgcagcgc atccctgatc ggttggcggc ggtgcgcgtc gccgcttttt
      361 cccacaccca gccaaagaat tgtccacatg acgccgacca cgcccagcga tagaaaagcc
      421 gcgtgccagt accagcgctg agcgatgaag gtgagcaccg gccccgccag gatgatgccg
      481 gtcgtggcgc cttgctggac gatggtggtc ggcagggcgc gttcatgatc ctcgaaccag
      541 gtgtacacga cgtgaagcgc gagcggggac gccggccctt ctcccgcgcc gagcaggatg
      601 cgacaggcca gcagcacggc gaagctggtt ggccacgcaa gcggtaattg cgtgaccgcc
      661 cacacgaggg caagacccgc catcagccat ttcacgttga gccggtcggc aactagtccg
      721 acgccgattc ccgatagcgc aaaaagcagg aaaaacgcgc ttccgacgat tccaaactgc
      781 gcatgcgtca gttgcatgtc gcgcatgagt ggcagcgcga cgaggccaag taccgctttg
      841 tcggcgaagt tgatcgccat gaaaagaaag agcgacgcca cgatcaccca gcgccgccgg
      901 cttgttgttg ctatgggtgc ggagcggtcc agcacgaatc cggaatcttt tgcttcaaac
      961 atcaaatgct cctgagaatg ccctggcagt ggggtcagcg aactcgtacc ccgatgcgtc
     1021 atggatagcg atggcagcac atggacacga tggcggacaa ggcgggtttt ggagcgatgc
     1081 gcgatgatgg ggttttcaat aacgtctcct gtgtgcggct ctattacgct tatcgaagcg
     1141 gtcctggccg aatgtttgcg cccatttgag gtggtataac gcaatagttc aagtgcaata
     1201 tctttattgg aacgttgcaa acaatgcatg aaatcaattc gcgtcggctt tctcatgtgg
     1261 ttgcgctggc tgaggaagga agttttgccc gcgcagctgg ccgggtccat ttgagccagc
     1321 ccgcgctgag ccgcagcatc caggcgctcg aagacgaact gggcatgaag ctcttcgatc
     1381 gtgccgcacg aggcgttgcg ttgacggctg ccggtcgcct cctggtcgag cgcgcgcgcc
     1441 gagtcctgtt cgaaacacgg tgcatgttcc gtgatgtcga gttgcttaag gcgcacgaac
     1501 tcggcgaggt gaagatcggc ctcgggccct acgcggccgt cgtgctgtta cctgacctgt
     1561 tggtcgaatt ttcacgacgc tttcccaaga tcaaagtgct gatcgagttg agtgaaggcg
     1621 acgagttgat gcagaaactt cgagcggagc gtgtcgattt cgtggtg
//
LOCUS       DATGBK010000134         2411 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_209798, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000134 DATGBK010000000
VERSION     DATGBK010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2411
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209798"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..694)
                     /gene="cmk"
                     /locus_tag="VKJ77_01935"
     CDS             complement(14..694)
                     /gene="cmk"
                     /locus_tag="VKJ77_01935"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HMC44065.1"
                     /translation="MKPTRPFHQTPVITIDGPTASGKGTVAASVAATLGFHLLDSGAL
                     YRLTALASARYNIEPEDGDALAELVAELHITFREGCAQLDGVDVSTEIRAEEIGNRAS
                     AIAVHGQVRTALIARQRAFRRPPGLVADGRDMGTVIFPDATLKVFLTASDEARAARRH
                     KQLIQKGFSANMEDLLRDLRERDARDSSRAAAPLKSAVDAKTLDTSGLSIDQAVGQII
                     GWFNAIHV"
     gene            complement(771..2075)
                     /gene="aroA"
                     /locus_tag="VKJ77_01940"
     CDS             complement(771..2075)
                     /gene="aroA"
                     /locus_tag="VKJ77_01940"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009921655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HMC44066.1"
                     /translation="MEHLDLGPFSRASGTVRLPGSKSISNRVLLLAALAEGETVITNL
                     LDSDDTRVMLAALNTLGVEVKNDGERCVVKGTGGRFPVKSAELFLGNAGTAVRPLTAA
                     LALNGGEYRVHGVPRMHERPIGDLVDGLRQIGAKIDYEANDGFPPLRIHPADIAVDQP
                     IRVRGDVSSQFLTALLMSLPLAQNTRGPIVVEVDGELISKPYIDITIKLMERFGMTVE
                     RDGWKSFTLPAGARYASPGAIAVEGDASSASYLLAAGALGGGPLRVEGVGRASIQGDV
                     NFADALIRMGANVMLGDDWIEVRGVESDDGKLMAIDMDFNLIPDAAMTIAVAALFATG
                     TTTLRNIASWRVKETDRIAAMATELRKVGATIEEGADYLVVTPPAALTPNAAIDTYDD
                     HRMAMCFSLVSLGGVPVRINDPKCVGKTFPDYFEQFAKLANA"
     gene            complement(2118..>2411)
                     /locus_tag="VKJ77_01945"
     CDS             complement(2118..>2411)
                     /locus_tag="VKJ77_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HMC44067.1"
                     /translation="ILQAPDAALKFSFAAGGFRDFTRIAASSPEMWRDVCIANRAALL
                     TEIDAYTNVLARFREAIATADGAALETAFERSRTARTVWQQGGAIKAADESAQ"
BASE COUNT          450 a          773 c          738 g          450 t
ORIGIN      
        1 caattgcaac gaactacacg tgaattgcgt taaaccaacc gatgatctga ccgaccgcct
       61 ggtcgatgga tagtccggag gtgtccagcg tcttcgcgtc cactgcagac ttgagcggtg
      121 cggctgcacg gctactgtcc cgtgcgtccc gctcgcgcaa atcacgcagc aagtcttcca
      181 tattagcaga aaagcctttt tgtatcaatt gcttatgccg ccgcgcagcg cgcgcttcat
      241 cgcttgccgt gagaaacacc ttgagcgttg catcgggaaa aataacggtg cccatgtcgc
      301 ggccgtcggc aaccagcccc ggaggcctgc ggaacgcccg ctggcgcgca atcagcgccg
      361 tcctaacctg gccgtggacg gcaatcgctg aagcacggtt gccgatttcc tcggcacgaa
      421 tttctgtcga tacatccacg ccgtcgagct gcgcgcagcc ttcccggaac gtgatgtgga
      481 gttctgcaac gagttcggcg agtgcatcgc cgtcctcggg ctcgatgttg tagcgagcgc
      541 tcgcgagcgc ggtaagccga tacagcgcac cgctatcgag taaatggaag ccgagcgtgg
      601 cggcgactga cgcggcgacg gtgcctttgc ccgaggccgt cgggccgtcg atggtgataa
      661 ccggagtctg gtgaaaggga cgagtgggtt tcatcggaga cgtccggatc ggcgagcggt
      721 tgcgcgcggg gtcggggctt tcatcgctgt ggttacatta gtcatggtca tcaggcattc
      781 gcgagcttgg cgaactgctc gaagtaatcc gggaaggtct tgccgacgca tttcgggtcg
      841 ttgatacgca ccggcacgcc tcccaggctc acgagcgaaa aacacatcgc catgcggtga
      901 tcgtcataag tgtcgatagc cgcattcggc gtcaacgcgg ccggcggcgt gacaaccagg
      961 taatccgcgc cctcctcgat cgtcgcgccg accttgcgca gctcggtcgc catcgcggca
     1021 atccggtccg tctccttcac gcgccagctc gcaatattgc gcagcgtggt cgtgccggtg
     1081 gcgaacagcg cggccacggc aatggtcatg gcggcatcgg ggatcaggtt gaaatccatg
     1141 tcgatggcca tcagcttgcc gtcatcggat tccacaccgc gcacctcgat ccagtcgtcg
     1201 cccagcatga cgttcgcgcc catgcggatc agcgcatcgg cgaaattcac atcgccctgg
     1261 atgctcgcgc ggcccacgcc ttccacgcgc aacggaccac cgcccagcgc gccggccgcg
     1321 agcaaatacg acgccgatga cgcgtcgcct tccactgcga tcgcgcccgg tgacgcgtag
     1381 cgcgcgccgg ccggcagcgt gaagctcttc caaccgtcgc gttcgacggt catcccgaaa
     1441 cgctccatca gcttgatcgt gatgtcgatg tacggcttcg aaatcagctc accatccact
     1501 tccacgacaa tcgggccgcg tgtgttctgc gccagcggca agctcatcag caacgcggtc
     1561 aggaattggc tggagacgtc gccacgaaca cggatcggct ggtcgacggc aatgtcagcc
     1621 gggtggatcc gcagcggcgg gaaaccgtcg ttcgcttcgt aatcgatctt tgcgccgatc
     1681 tgccgcaaac catcgacgag atcgccgatc ggccgctcgt gcatgcgcgg cacgccgtgc
     1741 acccgatatt cgccgccgtt cagcgcaagc gctgccgtga gcggacgcac cgcggtgcct
     1801 gcattaccga gaaaaagctc cgccgatttc accggaaagc ggccgccggt gcctttcacg
     1861 acacagcgct caccatcgtt tttcacctcg acgcccaatg tgttgagcgc cgcgagcatc
     1921 acgcgggtgt cgtcggaatc gagcaggttc gtgatcaccg tttcgccctc agccagcgcg
     1981 gcgagcagca ggacgcggtt agaaatgctc ttcgatccgg gcagccggac cgtgccggac
     2041 gcacgcgaaa aaggtccgag atcgaggtgt tccatgatta agtccagtta gtcaggtcca
     2101 gctagctatt gtgcggatta ttgtgcagat tcgtcggcgg ctttgatcgc gccgccttgt
     2161 tgccaaacgg tccgcgccgt gcgcgagcgt tcgaaggcag tttcgagcgc ggcgccgtcg
     2221 gcggtagcga tcgcctcgcg aaagcgcgcc agcacgttgg tataagcatc gatttcggtc
     2281 agcagcgcag ccctgttcgc gatgcacacg tcgcgccaca tttccggact cgacgccgcg
     2341 atccgcgtga aatcgcggaa cccgcccgcg gcgaacgaaa acttgagcgc tgcatccggc
     2401 gcttgcagaa t
//
LOCUS       DATGBK010000135         1663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1660, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000135 DATGBK010000000
VERSION     DATGBK010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1660"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..171
                     /locus_tag="VKJ77_01950"
     CDS             25..171
                     /locus_tag="VKJ77_01950"
                     /inference="COORDINATES: protein motif:HMM:NF025742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HMC44068.1"
                     /translation="MHSPPKQAVTMRLDADVLAWFKEQGQGYQTRINKLLRAYMLAQQ
                     KQHS"
     gene            complement(217..1491)
                     /locus_tag="VKJ77_01955"
     CDS             complement(217..1491)
                     /locus_tag="VKJ77_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007740260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44069.1"
                     /translation="MSSTSAAVPISRPAAWRAVVAASIGNALEWFDLVVYGFFAVVIS
                     KLFFPSGNDSVSILLTLGTFGVSFFMRPLGAIVLGAYADRAGRKAALTLSILLMMMGT
                     FIIAVLPTYSSIGVAAPLILVLARLMQGFSAGGEFGSATAFLAEHVPGRRGFFASWQV
                     ASQGLTTLLAAIFGVVLTGNLSPEQMSSWGWRVPFIFGLLIGPVAYYIRTRLDETPEF
                     LAAVPTATPLRDTFSLNKERLLIAIGTVVLGTVATYLVLFMPTYAIRQLGLAPSVAFT
                     AILLTGAIQMVLSPFVGHFSDTHGRTRIMLISAVLLLVLIYPLFTWLVGHPTFGTLLV
                     VQAVLGVLMTGYFAALPGLLSEMFPVATRTTGMSLAYNIAVTVFGGFGPFIITWLIAS
                     TGSKAAPSFYLIFAAVVSLVALMAARKRLGFK"
BASE COUNT          416 a          520 c          485 g          242 t
ORIGIN      
        1 gacgacttct ttcagcgcgc cgaactgcac tcgccgccta agcaagcggt gaccatgcgc
       61 ctggacgctg acgtcctggc ctggttcaag gaacaaggcc aggggtatca gacgcggatc
      121 aacaaacttc tgcgcgccta catgctggcg cagcagaagc agcactcgta aaaccacggg
      181 gcgacggcta cgtgcgaata agcccgcaca aaaccgtcac ttgaatccca accgcttgcg
      241 tgccgccatc aacgccacca ggctcacgac cgcggcaaag atcaaataaa agctgggcgc
      301 ggccttcgat cccgtcgatg caatcagcca cgtaatgatg aacggcccga atccgccgaa
      361 caccgtcacc gcgatgttat aagccagcga cattccggtc gtgcgcgtgg ccaccggaaa
      421 catctccgat aacaaccccg gcagcgcagc gaaatacccg gtcatcaaca cgccgagcac
      481 cgcttgaacg accagcagcg tgccgaaggt cggatgccca accagccacg tgaacagcgg
      541 atagatcaac acgagcagca gcaccgccga gatcagcatg atgcgcgtgc ggccgtgggt
      601 atcggagaaa tgaccaacga atggcgagag caccatctgg atcgcgccgg tgagcaggat
      661 ggccgtgaaa gccaccgatg gcgcgagtcc caactgccgg atcgcatacg tcggcatgaa
      721 gagcacgagg taagtcgcca ccgtgcccag caccaccgtt ccaatagcga tcagcaagcg
      781 ttccttgttc aacgagaagg tgtcgcgcaa aggggtggcc gtcggaacgg cggcgagaaa
      841 ttccggcgtt tcgtcaaggc gcgtgcggat gtagtacgcc accggcccaa tcagcaagcc
      901 gaagatgaac ggcacacgcc agccccatga actcatctgt tccggcgaca ggttgccggt
      961 tagcaccacg ccaaatatcg ccgcgaggag cgtggtcaag ccctggcttg caacctgcca
     1021 gctcgcgaag aaacctcgtc ggccgggaac gtgctcggcc aagaacgccg tcgcgctgcc
     1081 aaactcaccg ccggccgaaa agccctgcat caggcgtgcg agcacgagga tcaacggcgc
     1141 ggcaaccccg atggacgagt acgtgggcaa tacggcaatg atgaaggtgc ccatcatcat
     1201 caacaggatg gacagcgtga gcgcggcctt gcgtcctgcc ctgtcggcat atgcaccaag
     1261 cacgatggct ccgagcggcc gcatgaaaaa cgacacgccg aacgtgccga gtgtcagcag
     1321 gatggacacc gagtcgttgc ccgacgggaa aaacaacttc gagataacga ccgcgaaaaa
     1381 cccgtagacc acgaggtcga accattcgag cgcgttgcca atggacgcgg ccaccaccgc
     1441 gcgccacgcg gccgggcggc tgatcggtac tgctgcggac gtactgctca tgcatttctc
     1501 catgtcttgt tggtatgacg ggctgtcggc caaagtgcaa acgctgccga ctgtgccaca
     1561 ccgaaatcca gatcgaaatg ctcgcaatac cgggggcgaa aaaaaaccgc ttcggttaga
     1621 agcggttttc ttatctggca ggaaagaacc agcgggaaaa aac
//
LOCUS       DATGBK010000136         2543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_209806, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000136 DATGBK010000000
VERSION     DATGBK010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209806"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1439
                     /locus_tag="VKJ77_01960"
     CDS             <1..1439
                     /locus_tag="VKJ77_01960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009895879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HMC44070.1"
                     /translation="TFVSLITVPAYIHLVGVERYGVISLVWTLIGYFGILDLGMGMAA
                     QHQISKAHAANDPEARSRVFWSAIWLNLGTGIIGGILIYFGAFAYTAYVAHSSPAMQQ
                     EVYHALPWLALAIPIANVSWVCAGAINGVERFGIYNTNQTIGTFLFQLLPLAAAWKIA
                     PNLQTVLAAAVLARVLAVIMLARASFKVLDIKRIEWPQLGVAGGLFKFGGWMLVATIS
                     SMITDSLDRILLGANLGARFVTYYTVPQNLVTRLNMLPNSLVRTLFPRLSAVKREHAD
                     AMVQQSLEFLNGVFTPIALFAMLVLAPFLHLWVGQEIAIASAPVGRILIIGVWLVGQA
                     SVTRIMIQSQINPATAARIGIVQLPFFVTALWFGIAHFGPIGAASVVVLRSLADYGLL
                     LWISRIHARPIAVDMLMHLAFLVAGLGVAFVIDPIEYPLQSIAAAFVISGLNLGCSLL
                     TRPALRSMARSFVHELNVRLKRRVKSTV"
     gene            1455..>2543
                     /locus_tag="VKJ77_01965"
     CDS             1455..>2543
                     /locus_tag="VKJ77_01965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007745369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC44071.1"
                     /translation="MRHDLDEAVIDTVRVPLDPVGLLPPAVQDTPPRHRARIAKRVPR
                     VAIVHDWLVAFAGAEKVLEQIIMCFPDADLFSIVDFMEERSWMRGKKVTTSFIQKLPQ
                     AKKRYRSYLPLMPLAIEQLDVSGYDLVISSSHAVAKGILTGPDQIHISYVHSPIRYAW
                     DLQHQYLQQSNLTAGVKSLLARLVLHYMRNWDNRTSNSVDHFIANSAFIARRINKVYH
                     RDSHVIFPPVDVEAFQLCEVKEDFYLTASRMVPYKKIDLIVEAFAKMPERKLIVIGDG
                     PDMRKIRDKATPNVEIMGYQPFSVLQDKMRRAKAFVFAAEEDFGISVVEAQACGTPVI
                     AYGKGGALETVLDSSHARPTGLFFDEQTT"
BASE COUNT          471 a          826 c          704 g          542 t
ORIGIN      
        1 ctaccttcgt ctcgttgatc actgtgccag catacatcca tctcgtcggc gtcgagcgct
       61 acggcgtgat cagccttgtc tggaccctca tcggctactt cggcattctt gatctcggca
      121 tgggcatggc cgcccaacac cagatctcaa aggctcacgc cgccaacgac cccgaagccc
      181 gctcgcgcgt tttctggagc gccatctggc tcaacctcgg taccggcatc atcggcggca
      241 tcctcatcta cttcggcgcg ttcgcctaca ccgcctacgt cgcacattca tcccccgcca
      301 tgcaacagga ggtctatcac gctctcccgt ggctcgccct ggccattccc atcgccaacg
      361 tgtcatgggt ctgcgccggc gcaatcaacg gcgtcgaacg cttcggtatc tacaacacca
      421 atcagactat cggcaccttc ctgttccagt tgctgccgct tgccgccgcc tggaaaatcg
      481 caccgaacct gcaaaccgta ctcgccgccg ccgtcctcgc gcgcgtcctc gccgtgataa
      541 tgctcgcacg agcgagcttc aaagtgctcg acatcaaacg catcgaatgg ccgcagctag
      601 gcgtggccgg cggcttgttc aagttcggcg gctggatgct ggtcgcgacc atctccagca
      661 tgatcacgga ctcgctagac cgcatcctcc tgggcgcaaa tctgggcgca cgtttcgtca
      721 cctactacac cgtgccgcag aacctcgtca cgcgtctgaa catgctgccg aactcactcg
      781 ttcgcacctt gttcccgcgc ttgtccgccg tcaaacgcga acatgccgat gccatggtcc
      841 agcagtcact cgaattcctg aacggcgtgt tcacacccat cgcgctcttc gccatgctcg
      901 tgctcgcccc cttcctgcat ctttgggtgg ggcaggaaat cgcgatcgcc agcgcgcccg
      961 tgggccggat cctgatcatc ggcgtgtggc tcgtcggaca ggccagcgtc acacgcatca
     1021 tgatccagtc gcaaatcaat cccgccacgg cagcgcgtat cggcatcgtg caactgccgt
     1081 tcttcgtgac ggcactgtgg ttcggcatcg cgcactttgg tcccatcggc gcggctagcg
     1141 tagtcgtgct gcgctcgctc gccgactatg gattgctgct ctggatttct cgtattcacg
     1201 cccggcctat tgccgtcgac atgctgatgc atctcgcgtt cctcgttgct ggtctgggcg
     1261 tggcgtttgt catcgatcca atcgagtacc cgctgcaatc aatcgcagca gcgttcgtca
     1321 tatctggcct caatttaggc tgctcccttc tcacgcggcc cgcgttgcgc tccatggcgc
     1381 gcagcttcgt ccacgagttg aatgtgcgcc tgaaacggcg cgtgaaatcc acggtttaag
     1441 gtgaggagag acacatgaga catgatctcg atgaagcggt aatcgacacg gtgcgagtgc
     1501 cgctcgaccc tgtcggcctg ctgccgcctg ccgtgcagga cacgccgccc cggcaccgcg
     1561 cgagaatcgc gaaacgcgtg ccgcgggtcg cgatcgtgca tgactggctc gtcgctttcg
     1621 ccggtgcgga gaaagtgctc gaacagatca tcatgtgctt tcccgatgcc gatcttttca
     1681 gcatcgtcga cttcatggaa gagcgctcat ggatgcgcgg caagaaggtc accacctcct
     1741 tcatccagaa actgccgcag gcgaaaaagc gctaccgttc gtatctgccg ctgatgccgc
     1801 tcgcgatcga acagctcgac gtgtccggct atgacctcgt catttcaagc agccatgcgg
     1861 tggcgaaggg catattgacg ggccctgatc aaattcatat cagctacgtg cattcaccca
     1921 ttcgctatgc atgggatctg cagcatcagt acttgcagca atcgaatctc accgctggcg
     1981 tgaagtcgct gctcgcgcgt ctggtgctgc actacatgcg caactgggac aaccgcacgt
     2041 cgaattcggt ggaccatttc atcgcgaatt cggcgttcat cgcgcgacgc atcaacaagg
     2101 tttatcaccg tgattcgcat gtgatctttc cgcccgtcga tgtcgaagcg ttccagcttt
     2161 gcgaagtgaa agaggacttc tatctgacgg cgtcgcggat ggtcccctac aagaagatcg
     2221 atttgatcgt ggaagcgttc gcgaagatgc ccgagcgcaa gctgatcgtg atcggcgatg
     2281 gccccgacat gcgcaagatc cgcgacaagg ccacaccgaa cgtcgagatc atgggctatc
     2341 agccattctc ggttttgcag gacaagatgc ggcgcgcgaa ggcgtttgtg ttcgcggccg
     2401 aagaggactt cggcatctcg gtggtcgagg cgcaagcgtg cggtacgcca gtgatcgcgt
     2461 acggcaaggg cggcgcgctg gaaacggtgc tggatagttc gcacgcgcgc ccaacgggcc
     2521 tcttcttcga tgaacagacg acc
//
LOCUS       DATGBK010000137         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_140517, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000137 DATGBK010000000
VERSION     DATGBK010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140517"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VKJ77_01970"
     CDS             complement(<1..197)
                     /locus_tag="VKJ77_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44072.1"
                     /translation="MWSTSCPRSVNSDLTNTEFLRRHARRLLRRAHADNTSTAMPVVR
                     RLLAANVTRAGTLAELHKTRT"
     gene            complement(397..2052)
                     /locus_tag="VKJ77_01975"
     CDS             complement(397..2052)
                     /locus_tag="VKJ77_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC44073.1"
                     /translation="MKPFSLRGNPGAGFIPVGSAKAAIRPTAKIAGTSGRSLSVKASL
                     RLAFALLLVGSLVIGVIALTQISRLNGSTESIYRDGYVASRDVEELRGAVLRASRSQK
                     MLLTATTAKERDELGADVEHALADIGRGQHNLQNYADPTGDQKRLAAAVGAWSTDLRT
                     FVKLVKEQPLDLSQMNWQVGMQDVSLLVATGKLEKLVNALIEQRGAAAKATIDSAASI
                     YHESFVLVALLTLVLIVMAFAVGEWVVRRIARQLGGEPVYAMEIASRIAAGDLSNRIA
                     IAKRDNTSMLHALSGMQKDLSTTVGEIAASAEAIASASSEISQGNVDLSQRTEQQAVA
                     LEKTASSMEELTSTVRQNAENAKQASSLAYNASEIAEKGGVVVGRVVATMEQINASAK
                     SIGDIIGVIEGIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRNLAQRSSAAAKEI
                     KGLIHASVARVSDGSTFAHEAGATMEEVVKAVKRVTDIMGEISAASAEQSSGIEEINL
                     AVTQMDAGTQQNAALVEQAAAAAQSLDDQAHALKQLVGKFQLA"
BASE COUNT          395 a          741 c          641 g          476 t
ORIGIN      
        1 tccgtgcgcg ttttgtgaag ctccgcgagc gtcccggcgc gggtgacgtt cgcagcgagc
       61 aggcggcgca cgacgggcat cgccgtgctt gtattgtccg cgtgagcgcg acgaagcagc
      121 cggcgcgcgt ggcgtcgaag aaattcggtg ttggtgagat cggaattgac cgagcgagga
      181 caggatgttg accacatgac gtttctcctt gttgcgccgt tctcgctgcg gctaaaggtt
      241 caacgttgcg gtttatccag ataaagagat aacgcgtgac aggtgttttc actttcgcga
      301 gaccgggcgc cctgccgcgc ccgtcgcgaa ttctagaaca aaggcttgcg gttcagcaag
      361 cctgcattcg tcgattagcg tgcacaccgc gtttcatcac gccaactgaa acttgccgac
      421 gagttgtttc aacgcatgcg cctgatcgtc cagcgactgc gccgcggccg ccgcctgctc
      481 gaccagtgcc gcgttctgct gcgtgcccgc gtccatttgc gtcacggcga gattgatttc
      541 ctcgatgccg ctgctctgct ccgccgacgc cgccgaaatc tcgcccatga tgtccgtcac
      601 gcgcttgaca gccttcacaa cctcttccat ggtcgcgccg gcttcgtgag cgaaggtcga
      661 accatcggaa acacgcgcca ctgacgcgtg gatcaagccc ttgatttcct tcgccgccgc
      721 cgatgaacgt tgcgcgaggt tccgcacttc tccagcgacg accgcgaacc cacgcccttc
      781 ttcgccagcc cgcgccgctt ccacggcggc attgagcgcg aggatattcg tctggaacgc
      841 gatcccttca atcactccga tgatgtcgcc aatactcttc gcgcttgcgt tgatctgctc
      901 catcgtcgcg accacgcgtc cgaccaccac gccgcccttc tcagcaatct cggatgcgtt
      961 gtaagccagc gagctcgcct gcttcgcgtt ctcggcgttc tggcgtacgg tggacgtcaa
     1021 ctcctccatg ctcgacgccg tcttttccag cgcgacagcc tgttgctccg tgcgctgcga
     1081 caagtccacg ttgccctgcg agatttcgct ggacgccgat gcgatcgctt ccgcgctggc
     1141 cgcgatttca ccgaccgttg tcgataaatc cttctgcatg ccggagagcg cgtggagcat
     1201 gctggtgttg tcgcgcttcg cgatcgctat gcggttcgac aagtcgcccg ctgcgatccg
     1261 gctcgcaatt tccattgcat agaccggttc gccaccaagc tgcctcgcga ttcgccgcac
     1321 gacccattcg cccaccgcga acgccatcac gatcagcacg agcgtcagca gcgccaccag
     1381 cacaaacgat tcgtgataaa tggaagccgc cgagtcgata gtcgccttgg ccgccgcgcc
     1441 acgctgttca atcagcgcat tcacgagctt ttccagcttg cctgttgcca ccagcagcga
     1501 gacgtcctgc atcccgacct gccagttcat ctgcgacagg tcgagcggtt gttccttcac
     1561 cagtttgaca aaggtcctca ggtcggtgct ccacgcgcca acggccgccg ccaggcgctt
     1621 ctggtcgcca gtgggatccg catagttttg caggttatgt tgcccgcggc cgatatcggc
     1681 gagcgcatgt tcgacgtccg cgccgagttc gtcgcgctct ttcgcggtgg tcgcggtgag
     1741 cagcatcttt tgcgagcggc tcgcacgcag cacggcgccg cgcaactcct caacgtcgcg
     1801 gctggcgaca tacccgtcgc gataaataga ttccgtcgaa ccgttgagac ggctgatctg
     1861 cgtcagcgca atcacgccga taaccaacga gccgaccagc aataacgcaa acgcgagacg
     1921 cagcgacgcc ttgacagata acgaacggcc gctcgtgccc gcgatcttgg ccgtgggccg
     1981 gatggcggcc ttggcgctgc cgacgggaat aaatccagcg ccgggattgc cccgcagcga
     2041 aaacggtttc atctattgaa ttccccagtt tggattggca tcgcacggcc cgctttttgg
     2101 gcgggacgca cggctacatc aatggtctac ggcgggaaac ggcgcttctt tagcggtgtt
     2161 ttcttcacat gttacaaact cgtgtcgatc tcaccaaaag cgggcgcgct gctctacgtg
     2221 tgggcaaact gctgtccgtt tcgcgacaaa ctt
//
LOCUS       DATGBK010000138         3636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_186831, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000138 DATGBK010000000
VERSION     DATGBK010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3636
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_186831"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..104
                     /locus_tag="VKJ77_01980"
     CDS             <1..104
                     /locus_tag="VKJ77_01980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012399607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HMC44074.1"
                     /translation="WQMRVAGAMLHVVPRWLYDRLLEKAPRKPRARE"
     gene            complement(233..1510)
                     /locus_tag="VKJ77_01985"
     CDS             complement(233..1510)
                     /locus_tag="VKJ77_01985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3443 domain-containing protein"
                     /protein_id="HMC44075.1"
                     /translation="MRPTISTSNPTLRSGLIRWLAMLSLSVLLAACGGGGGDSGSSSV
                     SSSSGSSGSSGSSGSIPIAATASNTVPITVGPGAENFVNIPNVSVTVCAPGTSTCQTI
                     NNIQLDTGSYGLRLASDAATQILGSLPVAQSTSGGQLAECTQFADGFTWGTVRTADVK
                     IGGETASAIPIQVVGDLSDSTVPLNGCINGSNESTSRQLGANGILGVGVAPTDCGVTC
                     TNAATSNYYSCPSGTDCSAIAVAVAQQVVNPVTKFAVDNNGVIVQLPSVATSAASVTG
                     TLVFGIGTQSNNALATSATSYRSTAFGNLAGTYKGAATTTIIDSGSNGLFFTDSSLAG
                     CTSTFTDFYCPSSAQALSATVTGVNGVSGTVNFTVLNAQTLAASGTNYALNGLAGSIG
                     SFPTLFDFGLPFFFGRYVYVGFDTNGNPPYIAF"
     gene            complement(1529..2002)
                     /locus_tag="VKJ77_01990"
     CDS             complement(1529..2002)
                     /locus_tag="VKJ77_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2844 domain-containing protein"
                     /protein_id="HMC44076.1"
                     /translation="MAAGLTLSFLAVSPAYAVLGGAPMTPPADATVNTAVSHAAVSAV
                     ASAAGASASSYTVRTTTLAVGTVVNEYVGTDGVVFGIAWQGPRIPDLPTLLGSYFPQY
                     VQGIQNQRANGGGRGPVSVAGSALVVRSGGHMGAFAGQAYLPQSLPAGVSPSDIQ"
     gene            complement(2324..3028)
                     /gene="cheZ"
                     /locus_tag="VKJ77_01995"
     CDS             complement(2324..3028)
                     /gene="cheZ"
                     /locus_tag="VKJ77_01995"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0050920 - regulation of chemotaxis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HMC44077.1"
                     /translation="MTNHETLIDVEHEADASSGDRILARIGQLTRTLRDSMRELGLDK
                     QVEAAAEMVPDARDRLKYVATMTEQAAERALNAIELAKPLQETMQRDAQALDARWEQW
                     YGAPLENAEVKTLLADTRGFLQQVPVHTVATNTQLLEIMLAQDFQDLTGQVIKKITDV
                     VYVIEQQLLSVLLENIAPERREQFAAQAAALAAAASSVGSTDTLLNGPQINPEGRTDV
                     VQDQTQVDDLLASLGF"
     gene            complement(3040..3435)
                     /gene="cheY"
                     /locus_tag="VKJ77_02000"
     CDS             complement(3040..3435)
                     /gene="cheY"
                     /locus_tag="VKJ77_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006754880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HMC44078.1"
                     /translation="MDKNMKILVVDDFPTMRRIVRNLLKELGFSNVDEAEDGAAGLAR
                     LRGGGFEFVISDWNMPNLDGLEMLKQIRGDATLAHLPVLMVTAESKKENIIAAAQAGA
                     SGYVVKPFTAATLDEKLSKILEKMAKAGS"
BASE COUNT          706 a         1149 c         1059 g          722 t
ORIGIN      
        1 catggcagat gcgcgtcgcc ggcgcgatgc tgcacgtggt gccgcgctgg ctgtatgacc
       61 gcctgctgga gaaggcgccg aggaagccgc gcgcaaggga atgatcgttt agaacgatgt
      121 ccctgctgaa gcggcaatcg ccaccacaaa aacaaagccc ggcgcaaaaa ctcgccgggc
      181 tttgtcgctt tttgtcgacg ccttcgaggc tatcgaagtg aactagctgc gcttaaaacg
      241 cgatgtacgg cggatttccg ttggtgtcaa agccgacata aacatatcgg ccaaagaaaa
      301 acggtaggcc aaagtcgaac agcgtcggga atgaaccaat gctgccggct agtccattaa
      361 gtgcatagtt cgtaccgctg gcagccagcg tctgcgcgtt caggaccgtg aagttcaccg
      421 tgcccgacac gccattcacc ccggtaacgg ttgcactgag cgcctgcgca ctgctcggac
      481 agtagaagtc ggtgaacgtg gacgtgcagc ccgccaacga actgtcggtg aagaacaagc
      541 cattcgaacc tgaatcgata atggtcgtag tggccgcgcc cttataggtt ccagccaggt
      601 taccaaaggc cgtcgagcga tacgacgtcg cgctggtggc caacgcgtta ttgctctgcg
      661 tgccaatgcc gaataccaac gtaccggtca ctgacgccgc cgacgttgcc acagacggca
      721 attgcacaat cacaccgttg ttgtccaccg cgaacttcgt caccggattc accacctgct
      781 gggcaaccgc cacggcaatg gccgaacagt ccgtcccgct cgggcacgag tagtagttac
      841 tggtcgcagc gtttgtacag gtcacaccgc aatcggtcgg tgcaacaccc acgcccagaa
      901 tcccgttcgc gcccagttgc cgcgaggtgc tttcgttgct gccattgata cagccgttga
      961 gcggcaccgt ggaatcagac agatcgccca ctacctggat tgggatggcg ctcgcggttt
     1021 cgccgccaat cttcacgtcg gcggtacgca cggtgcccca tgtgaagccg tcggcgaatt
     1081 gcgtgcattc cgccagttga ccaccgctcg tcgactgggc caccggcaag ctgcccaaaa
     1141 tctgcgtcgc cgcgtcgctt gccagccgca agccgtacga accggtatcg agctggatgt
     1201 tgttgatcgt ctggcacgtg ctcgtgccgg gcgcacacac cgtcaccgat acgttcggga
     1261 tgttgacgaa gttttctgca ccgggaccca cggtgattgg cacggtgttc gacgccgtgg
     1321 cggcgatcgg tatgctgccg gaactgccgg aactgccgct gctgccacta ctgctgctga
     1381 cagaactgct gcctgaatcg ccgcccccgc caccgcaggc agcgagcaac accgacaagc
     1441 tcagcatggc gagccagcgg atcaggcccg aacgcagggt cggattagac gtggaaatcg
     1501 tcggacgcat aatagaagtc tccgtccgtt attggatgtc gctggggctg acgcccgcgg
     1561 gcaaggactg cggcaggtag gcctgcccgg cgaatgcgcc catgtgaccg ccggagcgga
     1621 ccaccagcgc gctgcctgcc acgctgacgg ggccgcggcc gccgccgttg gcacgctgat
     1681 tctggatgcc ttgcacgtat tgagggaaat agctgccgag cagggtcggc aaatcgggaa
     1741 ttcttggacc ttgccacgcg atgccaaaca ccacgccgtc cgtgccaaca tactcgttca
     1801 ccaccgtccc gacggcgagc gtcgtggtgc gaaccgtgta agaactggcc gaagcacccg
     1861 cagcggacgc aaccgctgac accgccgcat gcgacacggc ggtgttgacg gtggcgtcgg
     1921 cgggcggtgt catcggcgcg ccgccaagca cggcataagc cggcgataca gccagaaagc
     1981 tcaatgtaag ccctgctgcc aggctggcga gcgcagttac gcgtcgcgag ctcaatgaaa
     2041 tgatcgaagt gttcacttca agtcccctgt ttcgattatc tcaatattcg ctattttgcc
     2101 ttctgcaacg tcttcgccac aaaagtcaaa aagaaagctc taccagtatg ccagtcgatt
     2161 gagtcggaac cggaaaaacg acgcttcgta caaacgcgta cgttcgagcg ccgatagaag
     2221 actttcgggg aactgatacc gcgggaagcg gctcgacgcg agcaagtgcc agcacctgag
     2281 catgcgcagc gccgagcccg cgcgcgtcga gccgttcgta gcctcagaag ccgagactgg
     2341 cgagcagatc gtcgacttga gtctggtcct ggactacgtc ggtacggcct tctggattga
     2401 tctgcggacc gttcaacaag gtatccgtcg agcccaccga gctggctgct gccgccagcg
     2461 ccgccgcctg tgccgcaaat tgttcacgcc gctcgggcgc gatgttttcc agcaacacgc
     2521 tgagcaattg ctgctcgatt acatacacca cgtcggtaat cttcttgatc acctggccgg
     2581 tcagatcctg gaaatcctgc gcgagcatga tttcgagtaa ctgagtattc gtcgcgaccg
     2641 tgtgcactgg cacttgctgc aaaaagcccc gggtgtccgc caacaaggtc ttcacttccg
     2701 cgttctcgag cggcgcgcca taccattgct cccagcgggc atcgagcgcc tgtgcgtcgc
     2761 gctgcatggt ctcctgcagc ggcttcgcca actcgatggc gttcagtgcg cgctcggcgg
     2821 cctgctccgt catcgtcgcg acgtacttca ggcggtcgcg tgcgtccggc accatctcgg
     2881 cggcggcttc cacttgcttg tcgaggccga gttcgcgcat ggaatcgcgc agggtccgcg
     2941 tcaactggcc aatgcgcgcg aggattcggt cgccgctcga tgcatcagct tcgtgctcga
     3001 cgtcgatgag cgtctcgtgg tttgtcattt cgttcacgat cagctcccgg ccttagccat
     3061 cttttcgaga atcttcgaca gcttctcgtc gagggtcgcg gccgtgaacg gcttgaccac
     3121 gtatccgctc gcgccagcct gcgccgcagc gatgatattt tccttcttcg attccgccgt
     3181 caccatcagc acgggcaaat gggcgagcgt ggcgtcgccg cgaatttgct tcagcatttc
     3241 gaggccatcg aggttcggca tgttccagtc ggaaatgacg aactcgaaac cgccgccgcg
     3301 cagacgcgcg agaccggccg cgccgtcttc ggcttcatcg acgttggaga aacccagttc
     3361 cttcagcagg tttcgcacaa tgcgccgcat cgtcggaaag tcgtcgacga ccaaaatctt
     3421 catgttcttg tccaccatca ctgctccttg tattcctgtg ttttcttcaa gcggcgcatc
     3481 acgccgcgtt tctatcccgt ttctatccga attcttttgg gcgtggatta aacgcgctgc
     3541 gcccgttcac ccattgaatt aagccgcgcc atcacgcgcc gggtcatttc cgccagcggt
     3601 gcgatctcgc tgaccccgcc cgttgcaatc gcctcg
//
LOCUS       DATGBK010000139         1892 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_94352, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000139 DATGBK010000000
VERSION     DATGBK010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94352"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VKJ77_02005"
     CDS             complement(<1..224)
                     /locus_tag="VKJ77_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44079.1"
                     /translation="MIVSGQSYAADPAVVLIGHAAPLTGQLSHMGKDSENAARLAIDE
                     INSQHPVIGGKAVRFQLDSQDDAADPRTGT"
     gene            complement(504..1196)
                     /locus_tag="VKJ77_02010"
     CDS             complement(504..1196)
                     /locus_tag="VKJ77_02010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009771465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2848 domain-containing protein"
                     /protein_id="HMC44080.1"
                     /translation="MKTLECRIDGGAGIDVIEVMVSRLVIAGWAGRDARDVEHHIREL
                     EALGVKRPASVPTFYKVAPALLTTEGAIDVVGAHSSGEVEVVLIQTASDGLLVGIGSD
                     HTDRRVESYDVAVSKQMCAKPVSAALWRYADVASHWDSLIARSWRIDGDAGPALYQEG
                     TLARLLRPDELVERGFGAAAMPSGSAMFCGTQAVLGELSAGAGYELELHDPILGRSLR
                     HRYMVDALAHVE"
     gene            1388..>1892
                     /locus_tag="VKJ77_02015"
     CDS             1388..>1892
                     /locus_tag="VKJ77_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44081.1"
                     /translation="MNVRFLETFVWLAKLRNFRMTAEHLHATQAAISSRISALEQEFG
                     VRLFDRGPRDVTLTQEGTKALAFAEQILKLNRDMLASVSDRSKVAGLLRLGVIESVVH
                     TWLPNLLKRVREEYPNLTIELTSDTTANLSGHLTNGNVDVALLTTNVTGSDAVNIPLG
                     TLPMRWVA"
BASE COUNT          373 a          587 c          587 g          345 t
ORIGIN      
        1 tgcgtgccgg tgcgcggatc ggcggcatcg tcctgggaat cgagctggaa gcggaccgcc
       61 ttgccgccga tcaccgggtg ctggctgttg atttcgtcga ttgcgagccg cgcagcgttt
      121 tcgctgtcct tgcccatgtg ggaaagctgt ccggtcagcg gcgcagcgtg gccgatcagg
      181 acgacggccg ggtcggcggc gtagctttgt ccgctgacaa tcaaaagaac cgctgccgag
      241 aggacggagc aggcggagca ggcgggacgc gagaaacgaa gcggggcgga agaggaagtc
      301 acgagcggat ccttggggct tggaaagtga gcggggccgg tgcgtccatc ggacgtaacc
      361 agcaacacgg gcggcgtatg aggctcagta ttcaaacgcc aatttgcccc gtccaacgac
      421 taattgtgtt ggccggcgat aaacaaatct aatgcctcgc tgaatcgcgt gggtctgatg
      481 agcggagcgt tcgattgtca ctgtcattcg acatgggcca acgcgtcgac catgtagcga
      541 tgccgaaggc tccgtccaag tatcggatca tgtagttcga gctcatagcc cgcgcctgcg
      601 ctgagttcac cgagtacggc ttgcgtgccg cagaacatcg ccgatccgga cggcatcgcg
      661 gccgcaccga accctcgttc gacaagctcg tccggacgca gcaagcgggc gagcgtgcct
      721 tcctggtata gcgcggggcc ggcatcgccg tcgatccgcc aactgcgtgc gatcagcgaa
      781 tcccagtgcg aggcgacatc ggcgtaacgc cagagcgcgg cgcttaccgg cttcgcgcac
      841 atctgcttcg agactgcgac gtcgtagctt tccacccggc gatccgtatg atcggaccct
      901 atgccgacga gcaagccgtc gctcgcggtc tggatcagca cgacttcgac ctcgccggag
      961 gagtgcgcac ccaccacatc gattgcaccc tcggttgtca gcaacgcagg cgctaccttg
     1021 tagaacgtcg gcaccgacgc agggcgtttg acgcccagcg cttccagttc gcggatgtgg
     1081 tgctcgacgt cgcgcgcgtc gcgccccgcc cagccggcga tgaccaggcg gctcaccatt
     1141 acctcgataa cgtcaatacc cgcgccgcca tcaatcctgc attcaagtgt cttcatcaaa
     1201 acctttcacc gggtggattc aatgaatgac agtcttgaag aagggcgcgg cgaagtccaa
     1261 caagtaaatg tgggcctatg tggtcacttt ttcttgtcac gcgggaattc ttccagcgat
     1321 aaactggcgg gaatgattcg gccgatgccc gccgcttcgc cactcaacgc atcagccggg
     1381 gtgcgccatg aatgtccgct ttctcgaaac gtttgtatgg ctcgccaagc tgcgcaactt
     1441 ccggatgacg gccgagcacc tgcacgcgac ccaggccgcc atctccagcc gaatttccgc
     1501 gctggaacag gagttcggcg tacgtctgtt cgaccgcggc ccacgcgatg tgacactcac
     1561 gcaggaaggc accaaggcgc ttgcgttcgc ggagcaaatc ctgaaactga accgggacat
     1621 gctcgcgagc gtcagcgacc gttccaaagt cgcggggctg ctgcggctgg gcgtgatcga
     1681 gtcggtcgtg catacctggt tgccgaatct gctgaagcgc gtgcgagagg aatacccgaa
     1741 cctgacgatc gaactcacgt cggacaccac ggccaatctc tccgggcatc tgaccaacgg
     1801 caacgtcgac gtcgccttgc tgaccacgaa cgttaccggc agcgacgctg tcaacattcc
     1861 gctagggaca ctgcccatgc gatgggtggc aa
//
LOCUS       DATGBK010000140         2951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_232950, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000140 DATGBK010000000
VERSION     DATGBK010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232950"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..611
                     /locus_tag="VKJ77_02020"
     CDS             <1..611
                     /locus_tag="VKJ77_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003995 - acyl-CoA dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0033539 - fatty acid beta-oxidation using
                     acyl-CoA dehydrogenase [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase domain-containing
                     protein"
                     /protein_id="HMC44082.1"
                     /translation="ATLKRFEDDGRPEADLALVRWGVEDALHQAQTAFEGVLSNYPKP
                     VAAGFVRALAFPFGMPHRVPGDRLGTAIAELMTTPGDARERLIADSYAPPVHIDPLGY
                     GELMFALSPRYAQIESKLRDAVKARQIPPMPQSLPELDAWAAACETRGLIDTAERQVL
                     SDYARYGVEVVKVDDFGADFGMLDALKKRQEALSIEPEEIHA"
     gene            648..2078
                     /locus_tag="VKJ77_02025"
     CDS             648..2078
                     /locus_tag="VKJ77_02025"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase"
                     /protein_id="HMC44083.1"
                     /translation="MKDRYLDFVNSPFGASVARSIGLPQPEVLRRHALGRAEFGGIAA
                     IGAGPSPTLFEPLITLLTALGMTSVAHESALGWLPVAARHGAMSGRFEPRAPGAAPND
                     RVQALIFDATGITDSTQLHALYGFFHDAIRSVAKSGRIVVLGLPPQSCTSPRAWTAQR
                     ALEGMTRSLGKEARGGISSNLIQAEPGANIEGTLRFLLSPRSAYVSGQVVHIDATPFT
                     PPADWNQPLAGKRALVTGAARGIGAAIAQVLADRGAHVIGLDVPQAQDALDQTMLALE
                     DAWPSLGAHTALVADIAAPEAPDAIASALLAMGGIDIVVHNAGITRDKTIAKMTEVAW
                     DSVIDVNLSAQERIDDLLLDQNVLHAGGRIIGVSSISGIAGNLGQTNYATSKAGVIGR
                     VQSMVEPLRARGITINAVAPGFIETQMTARIPLGLREAGRRMNSMSQGGQPVDVAETI
                     AWLASPACAGITGNVVRVCGQSLIGA"
     gene            2081..>2951
                     /locus_tag="VKJ77_02030"
     CDS             2081..>2951
                     /locus_tag="VKJ77_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC/PaaZ C-terminal domain-containing protein"
                     /protein_id="HMC44084.1"
                     /translation="MGMPLPSSSPSGSPRMRTVILESLPPPVKLYGRALQGIFKRAEG
                     VAELPPLRLVRPSVPLDPEQIGRYARVCGFIPEQGVPVTFPHVMAFPLHLMLLTDPAF
                     PWPAMGLVHVSNSVRLRRTLHSGQALRIEVESGALVAHDKGQAFTLHTRIYRGGEAVW
                     DADSVYLKRGVAGYGHASASQADATPPALVREARWQLPAQLGRDYAKASGDFNPIHLH
                     ALTAKAFGFPRAIAHGMWTLARTLAALQPSKQLAAANVHGDFKSPIFLPAETTLWTAA
                     LSATGRDFEVRDLA"
BASE COUNT          521 a          922 c          949 g          559 t
ORIGIN      
        1 cggccacgct caagcgcttc gaagacgatg gccgccccga agccgatctt gcgctcgtac
       61 gctggggtgt cgaagatgcg ctgcatcaag cgcaaactgc gttcgaaggc gtactctcta
      121 actatccgaa gccggtcgca gcaggcttcg tgcgcgcgct cgcgtttcct tttggcatgc
      181 cgcatcgcgt gccgggggat cggttgggga cggctatcgc cgagttgatg acaacgcccg
      241 gcgacgcccg cgaacgtctg attgctgact cgtacgcgcc gcccgtgcat atcgatccgc
      301 tcggttacgg cgagttgatg ttcgcgctca gtccgcgtta cgcccagatc gagagcaagc
      361 tgcgcgatgc ggtcaaggcc cggcaaatcc cgccgatgcc gcaaagcctg cccgaactcg
      421 atgcctgggc cgcggcctgc gaaacgcgtg gtttgatcga tacggccgaa cgtcaggtac
      481 tctccgacta cgcgcgttac ggcgtggaag tcgtcaaggt agatgacttt ggcgcggatt
      541 tcggtatgct cgatgcattg aagaaacgcc aggaagccct gtcgatcgag cccgaggaaa
      601 tccatgcgtg acgcttcaca taagcgctaa accgttttca ggcaggcatg aaagatcgct
      661 atctcgactt cgtcaattcc cctttcggcg cgagcgtcgc gcgttccatc ggcttgcctc
      721 aaccggaagt attgcggcgg cacgcgctag gacgcgcgga attcggcggt atagcagcga
      781 tcggagcggg tccgtcgccc acgctgttcg agccgttgat cacattgctg actgctctcg
      841 gcatgacgag cgtcgctcac gaaagcgcgc tcggctggtt gccggttgcg gctagacatg
      901 gcgccatgag cggacgcttc gaaccgcgcg cgccgggcgc ggcgccgaat gaccgcgtgc
      961 aggcgctgat cttcgatgcc accggtatca ccgacagcac gcaactgcat gcgctttacg
     1021 gcttcttcca cgatgccatc cgctcggtgg cgaagagcgg ccgtattgtc gtgcttgggt
     1081 tgccgcctca atcgtgcacg tcaccgcgtg cgtggaccgc gcaacgggcg ctggaaggca
     1141 tgacacgttc gctcggcaag gaagcgcgtg gcggcatttc ttcgaatttg atccaggcgg
     1201 agccgggcgc caatattgaa gggaccttgc gtttcctgct ctcgccgcgc tcggcgtatg
     1261 tatcggggca agtcgtgcat atcgacgcca cgccgttcac gccgccggcc gactggaacc
     1321 agccgctagc gggcaaacgc gcgctcgtga cgggcgcggc acgcgggatt ggtgcagcga
     1381 tcgcgcaggt actcgccgat cgtggcgcgc acgtgatcgg gctggatgtc cctcaggcac
     1441 aggacgcgct cgaccagacc atgctcgcgc tggaagatgc gtggccttcg cttggggcac
     1501 acacggcact cgtcgcggat attgccgcgc ccgaagcgcc tgatgccatt gcgtctgctc
     1561 tgctggcgat gggcggtatc gatatcgtcg tgcacaacgc cggcatcacg cgcgacaaga
     1621 cgatcgcgaa gatgacagaa gtcgcgtggg acagcgtgat cgatgtgaat ctctccgcgc
     1681 aggaacgcat agacgacttg ctgctcgatc agaacgtgct gcatgcgggc ggccggatca
     1741 taggggtatc gtcgatcagc ggcattgccg gcaatcttgg ccagaccaat tacgcgacct
     1801 cgaaggccgg cgtgatcggt cgcgtgcaga gcatggtgga accgctgcgc gcacggggca
     1861 tcacgatcaa tgcggttgcg ccggggttca tcgaaacgca aatgaccgcc cgaattccat
     1921 tgggacttcg cgaagccgga cgacgcatga attcgatgag ccaaggcggc cagcccgtgg
     1981 acgtagccga gacgatcgcg tggctcgcca gccccgcttg cgccggcatc accggcaacg
     2041 tggtgcgcgt gtgcggacaa agcctgatcg gagcatgacc atgggcatgc cgcttccctc
     2101 aagctcgccg tcgggttcgc cacgcatgcg aacggtgatc ctggaatctt tgccgccacc
     2161 cgtgaaactc tatggccgtg cgctgcaggg cattttcaag cgcgcggagg gggttgctga
     2221 actaccgccg ctgcgcctcg tgcgtccaag cgttccgctt gatcctgaac agatcggccg
     2281 ctatgcgcgc gtatgcggtt ttatcccgga gcaaggtgtg cctgtcacct tccctcacgt
     2341 gatggcgttc ccgctgcacc tgatgctgct caccgatccc gcgtttccat ggcccgcaat
     2401 gggtctcgtg catgtatcga acagcgtgcg cttgcggcgc acgctgcact cgggacaggc
     2461 attgcgcatt gaagtggaaa gcggcgcgct ggtggctcac gacaaggggc aagcgttcac
     2521 gctgcatacg cgcatctatc gcggcggtga agcggtctgg gatgcggaca gtgtgtattt
     2581 gaagcgcggt gtcgcgggtt acggtcatgc ttccgcttct caggcagacg ccacgccgcc
     2641 cgcgctggtc cgtgaagcac gctggcagct tcctgcacaa ctcggccgcg actacgcaaa
     2701 agcgtccggc gacttcaacc cgattcatct gcacgcgctg accgcgaaag cgttcggctt
     2761 tccgcgcgcc atcgcgcatg ggatgtggac gctcgcgcgc acgctcgcgg cgttgcaacc
     2821 gtcgaagcaa ctcgctgccg ctaatgtgca tggcgacttc aagtcgccca tttttctgcc
     2881 ggccgaaacc actttgtgga ccgcggctct atcagcgacg ggacgcgact tcgaagtgcg
     2941 cgatctggcg g
//
LOCUS       DATGBK010000141         4416 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1743, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000141 DATGBK010000000
VERSION     DATGBK010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4416
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1743"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            7..168
                     /locus_tag="VKJ77_02035"
     CDS             7..168
                     /locus_tag="VKJ77_02035"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HMC44085.1"
                     /translation="MAFTTASSRVFLRVHFASDVLAGFALGTIWLVACILSIELTRRY
                     WPRPSRRQS"
     gene            complement(159..556)
                     /locus_tag="VKJ77_02040"
                     /pseudo
     CDS             complement(159..556)
                     /locus_tag="VKJ77_02040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829801.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing DNA-binding protein"
     gene            647..1036
                     /locus_tag="VKJ77_02045"
     CDS             647..1036
                     /locus_tag="VKJ77_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HMC44086.1"
                     /translation="MTTELHILACTLVLALIQVLLPSVVRSRETGLGHNGGPRDQPGP
                     PVGKLTGRLMRAQSNLFETLPVFAVAILIAHMAGREGTLTLYGAWLYIVARVVYLPLY
                     AAGIPFLRSLVWLVSLFGIILVLVPII"
     gene            1063..1737
                     /locus_tag="VKJ77_02050"
     CDS             1063..1737
                     /locus_tag="VKJ77_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC44087.1"
                     /translation="MTALLTTIDVETAPNPEFAVILMHGLGADANDFIPLVPELRLGD
                     LPAVRFVFPNATEMPVTGNNGYVMRAWYDILSFEGVNRRVDEAGLKASCERIRELIAR
                     ENEHGIPTSKIFLAGFSQGGAMTYIAGLTHPEKLAGMIVLSGYVPSPGLIDAAFSEAN
                     RDTPTFAAHGTQDPVLPIELAVQGRDFALAHGCKLEWHTYPMQHSVCAEEIEALRVWL
                     GARLHG"
     gene            complement(1734..2699)
                     /locus_tag="VKJ77_02055"
     CDS             complement(1734..2699)
                     /locus_tag="VKJ77_02055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004523961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HMC44088.1"
                     /translation="MTIHKVIYDTDPGVDDAMALVFQALHPEIELLGITSVFGNATIE
                     TTTANALYLRSRFAPGVPVARGAAAPLHRAPPAPLGWIHGDNGLGNIELSQPADTTLD
                     ARPAHQFMIDTVRAHPGEVTLIAVGPLTNLAHALKTDPGIAGLVKQVVIMGGAFGTAG
                     VLGNVSPAAEANILCDPDAADLVLGAAWPVTLVGLDVTQSTIMPNEWLASIRDGAGEA
                     GRFVWDVSRHYAQFHHDSAGLEGIYVHDASAVAYVLAPHLYTVREGPVRVLTSGIATG
                     QTIQKPSTMRVPAPDWDDRPAQSVCIGVDAAGMLDLYKNTFIKAL"
     gene            complement(2696..3085)
                     /locus_tag="VKJ77_02060"
     CDS             complement(2696..3085)
                     /locus_tag="VKJ77_02060"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009972 - cytidine deamination [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HMC44089.1"
                     /translation="MTMDELLERAKHARERAYAPYSRFKVGAALLTKDGSVFDGCNVE
                     NASYGLCNCAERTAFFSAIAAGYARDEFAALAVIGDTDGPIAPCGACRQVIIELGGPE
                     LTIRLGNLNGATRDTTAREQLPDAFYL"
     gene            complement(3096..4373)
                     /locus_tag="VKJ77_02065"
     CDS             complement(3096..4373)
                     /locus_tag="VKJ77_02065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005337 - nucleoside transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:1901642 - nucleoside transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HMC44090.1"
                     /translation="MALIARNLLGIAVLLLIAFIFSTNRRGIRLRTVVPALLAQVGIG
                     AFILFVPLGKSVLSAAAAGVNHVLGYGNAGIEFLFGGLVQSKMFELFGNGGFVFAVRV
                     LPAIIFVTALISVLYYLGIMRWIVIVLGTIFQKLLGVSKIESFSAVTTIFLGQSEMPA
                     VVKPFARDMTSAELFAVMSSGMAAVAGSVLAGYAGLGVKVEYLLAASFMAVPGGLLFA
                     KIIHPTSEASRVTLENLNFDEKRPANVIEAASSGATVGLKIAVMVGAMLIAFVGLIAM
                     LNGIVGGIGGWFGDPNVSMQSVLGAVFAPLAYLIGVPWDQAALAGNFLGQKLILNEFV
                     AYASLSPYLKDSASVAAAGLQVLDPRTIAILSFALCGFANFSSIAVLTGGFSAVAPER
                     RSEVARYGLRVVLAATLSNLMSATIAGMFLTLN"
BASE COUNT          848 a         1345 c         1390 g          833 t
ORIGIN      
        1 acgcttatcg cgttcacgac ggcaagcagc cgcgtattct tgcgcgtaca tttcgcgagt
       61 gacgtgctgg cagggtttgc gctgggaacg atctggctgg tggcgtgtat cttgagtatc
      121 gagctgacgc gtaggtactg gccgaggccg tcgcggcgtc agtcctgagg gtgtatcgac
      181 agttcgggaa agccggtgcg cggatcgagt tcgcgtgaga agcgcacgcc gtcgagacaa
      241 acgatcagga tttccgccgt cgtccgtaca atgcatcccg acgattcatg gccgccgatc
      301 acgcggcctc ggcattcgag acggccatgt gaagatgcgc gccgtcggct gaaagtgagc
      361 cggccagcgt caggatttcg aggtcaccgt caagccgggt cggctggtcg aggcccgcgt
      421 aacgcaggtt tgccacgctc aggctgccga ttccctgcat cacgaacgcg gcgccgatcg
      481 cctggtcccg cgcgattgtc tcaagcgcgg cacgcaggtc gtcgccgggg acaaggcgta
      541 ctggaagtgt ttgcatgagt gaatgcccca cggctacgca atgcaccaat gatggcatga
      601 tgattccggt ttcgcgcacc gatctccaat caaaccgaca tttcccatga caaccgaact
      661 tcatatcctt gcctgcacgc ttgtgcttgc ccttattcag gtgctgctgc cgtcggtggt
      721 gcgcagtcgc gaaaccggct tgggacataa cggcggaccg cgtgaccagc cggggccacc
      781 ggtcggcaag ctgacgggcc gtctgatgcg tgcccagagc aacctgttcg agaccttgcc
      841 cgtgttcgcc gtcgctatcc tgatcgcgca catggctggc cgcgaaggca cgctaacgct
      901 ttacggcgcg tggttgtaca tcgtcgcgcg cgtggtctac ctgcccttgt acgcggcagg
      961 gattccgttc ctgcgctcgc ttgtatggct cgtctcgctt ttcggcatca ttctcgttct
     1021 cgtccctatt atctgaaacc atctgaaacc ggagtccagt caatgaccgc tttgctcacc
     1081 accatcgacg tggaaaccgc gccgaatccc gagttcgccg tgatcctgat gcacggcctg
     1141 ggtgccgacg ccaacgactt catcccgctg gtgcccgagc tgcgcctggg cgatttgccc
     1201 gccgtgcgct tcgtgtttcc gaacgccacc gaaatgccgg tcaccggcaa caacggttat
     1261 gtgatgcgcg cgtggtacga cattttgtcg ttcgaaggcg tgaaccgccg ggtcgatgaa
     1321 gccggtttga aggcatcgtg cgaacggatt cgcgaactga tcgcccgtga aaacgagcac
     1381 ggtattccga cctcgaagat cttcctggcg gggttttcgc aaggcggcgc aatgacttat
     1441 atcgcggggc tcacgcatcc cgagaaactg gcgggaatga tcgtgctgtc cggttacgtg
     1501 ccgtcgcctg gtttgatcga tgcggcgttc agcgaagcga atcgcgacac gcctactttc
     1561 gccgcgcatg gcacgcaaga ccctgtgctg cctatcgagc tggccgttca aggccgcgac
     1621 ttcgcgctcg cgcacggttg caagctggaa tggcatacct acccgatgca gcactcggta
     1681 tgtgccgaag aaatcgaggc cttgcgcgtg tggctaggcg caaggctgca cggttaaagt
     1741 gccttgataa aggtgttttt atacaaatcg agcatgccgg ctgcatccac gccgatgcag
     1801 accgactgcg ctggccggtc gtcccagtcc ggcgccggaa cgcgcatggt agagggtttc
     1861 tgtatcgtct ggccggtcgc gataccactg gtcagcaccc gcacaggacc ctcgcgcacc
     1921 gtatagagat gtggcgccag cacgtacgcc acggccgatg catcgtggac gtagatgccc
     1981 tcgagtccgg cgctgtcatg gtggaactgc gcgtaatgcc gcgatacgtc ccacacaaaa
     2041 cggccggcct cgcctgcgcc atcacgaatc gatgcaagcc attcgttcgg catgatcgtg
     2101 ctttgcgtga cgtcgaggcc gaccagcgtg accggccatg ctgcgccgag cacgagatcc
     2161 gctgcatcgg ggtcgcacag gatgttggct tcggccgccg gcgatacgtt gccgagtacg
     2221 ccggccgtac cgaatgcccc gcccatgatg acaacctgct tcactagccc ggcaataccc
     2281 gggtcggttt tcagcgcgtg cgccagattc gtcaatgggc cgactgcgat cagcgttact
     2341 tcaccgggat gcgcgcgaac cgtatcgatc atgaactgat gcgcggggcg cgcgtcgagc
     2401 gttgtatcgg cgggctggct gagttcgata ttgccgagtc cgttgtcgcc atgaatccag
     2461 ccgagcggcg caggcggcgc gcgatgcaac ggcgccgccg cgccgcgcgc cacgggcacg
     2521 ccgggcgcaa aacgcgagcg caagtacagt gcgttagccg tggtcgtttc tatggtcgcg
     2581 ttgccgaaca cgctcgtgat gccaagcagt tcgatctcgg gatgcagcgc ctggaacacc
     2641 agcgccatgg cgtcgtcgac acccggatcg gtgtcgtaga tgaccttatg gattgtcata
     2701 ggtagaacgc gtcggggagt tgttcgcggg cggtggtgtc gcgggtcgcg ccattgagat
     2761 tgccgaggcg aatggtcaac tcggggccgc ccagttcaat gatcacctga cggcacgcgc
     2821 cgcagggcgc aatgggaccg tccgtgtcgc cgatgacggc gagcgctgca aattcatcgc
     2881 gtgcgtaacc tgcggcaatt gcgctgaaaa acgccgtgcg ttccgcgcaa ttgcacaatc
     2941 catacgatgc attctcgacg ttgcagccat cgaatacgct gccatctttt gtgagcaagg
     3001 ccgcgccgac cttgaacctg gaatagggtg cgtaagcgcg ttcgcgcgcg tgcttcgcgc
     3061 gttcgagcaa ctcgtccatc gtcatgattt tctccttagt tcagcgtcag gaacatgccc
     3121 gcgatcgtcg cgctcatcag gttcgagagc gtggcggcga gcacgacgcg caggccgtag
     3181 cgtgccactt ccgagcgccg ctccggcgca accgcgctga agccgccagt cagcacggcg
     3241 atcgacgaga agttcgcgaa gccgcacagc gcgaaagaca agattgctat ggtacgcgga
     3301 tcgagcacct gcaatccagc cgccgcgacg ctggcggagt ccttcaaata cggagacagc
     3361 gacgcgtagg ccacgaactc gttgagaatg agtttctggc ccaggaagtt gcccgcgagc
     3421 gcggcctggt cccagggcac gccaatcaaa tacgcgagcg gtgcgaacac ggcgccgagc
     3481 actgattgca tcgatacatt ggggtcgccg aaccagcccc ctatgccgcc cacaatcccg
     3541 ttgagcatcg cgatcaggcc gacgaacgcg atcaacatgg cgccgaccat gacagcgatc
     3601 ttcaagccga cagttgcccc ggaactggcc gcttcgatca cattcgccgg gcgcttttcg
     3661 tcgaagttca ggttttcgag ggtgacgcgg ctggcttcgc tcgtggggtg gatgatcttg
     3721 gcgaacagca gtccgcccgg cacagccatg aacgacgcag cgagcaggta ttcgaccttc
     3781 acgccaaggc ccgcataacc ggcgagcact gaacccgcga ctgccgccat gccgctcgac
     3841 atgacggcga acagttccgc gcttgtcatg tcgcgcgcga acggcttcac gaccgccggc
     3901 atttcgcttt ggccgaggaa gatggtggtg acagccgaga acgattcgat cttcgacacg
     3961 ccgagcagct tctggaagat cgtgccgagc acgatcacga tccagcgcat gatgccgagg
     4021 taatagagca ccgagatcaa cgcggtcacg aagatgatgg cgggcagcac gcgaacggcg
     4081 aagacgaaac cgccgttgcc gaagagttcg aacatcttcg attgaacgag accgccgaac
     4141 aggaattcga tgcctgcgtt gccgtagccg agcacatgat tgacgcccgc ggccgctgcg
     4201 gagagcacgc ttttgccgag gggcacgaac aggatgaagg cgccgatgcc gacctgcgcc
     4261 agcaacgccg gcacgacggt gcgcaggcga atgccgcggc gattggtgga gaagatgaaa
     4321 gcgatgagca gcagtacggc gatgccaagc agattgcgtg cgatcagggc catgtctcgt
     4381 tatttatgtt gtcagaggaa tgggcggatg ctacgc
//
LOCUS       DATGBK010000142         1567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_1764, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000142 DATGBK010000000
VERSION     DATGBK010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1764"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..761
                     /locus_tag="VKJ77_02070"
     CDS             <1..761
                     /locus_tag="VKJ77_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44091.1"
                     /translation="PVGKDLLPEVRRLLTGADALRPLAQSLARGEAGVLSLAFVSTAD
                     YGLLPLLLRDFGARYPGVRLQLVEATSDVQVEELVAGRIDAGLVIPPLPPRHAVALSY
                     LPIAREPLVIAMSSDAAAELGQGAEEWSETPVSLHQLADAPLVVFPRRLAPGFYDIIM
                     GCYGAAGLMPRVGQEAIQMQTIVSLVSAGMGVALVPQSLRHLRRTGVVYRPLLESGPV
                     VETGLVWRAAEVSPVLAGFIDIVRAHAATVPALP"
     gene            783..>1567
                     /gene="lgt"
                     /locus_tag="VKJ77_02075"
     CDS             783..>1567
                     /gene="lgt"
                     /locus_tag="VKJ77_02075"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HMC44092.1"
                     /translation="MLIHPNFDPIALHLGPLAVRWYGLMYLLAFIQCIVIGRLRLRLP
                     YVAAQGWTTKDIDDILFYGVLGTILGGRLGYVVFYKSSFYFANPLDIFKVWEGGMSFH
                     GGMIGVTLAMVVFAWQRKRTWLQVTDFVAPLVPLGLAAGRFGNFINGELWGRVTNPNA
                     PWAMLFQNASPDDAIWLRTHPQQAAQWNLNEIFERYQMLPRHPSQLYEIALEGFALFI
                     VMWLMSRKQRPVGAISAVFLIGYGLARFTVEFAREPDDYLGLLA"
BASE COUNT          229 a          479 c          504 g          355 t
ORIGIN      
        1 cgcccgtggg caaggacttg ctgccggaag tacgacgcct gctcaccggc gcggatgcgt
       61 tgagaccgct cgcccagtcg cttgcgcggg gcgaggccgg ggttctgtcc cttgcgttcg
      121 tttccaccgc cgattacggc ctcctgccac tgctgctgcg cgattttggc gctcgttacc
      181 ctggcgtccg gctgcaactc gtggaagcga ccagcgacgt tcaggtggaa gagctggtgg
      241 cgggccgcat agacgccggg ctcgtcatcc ccccgctgcc gccgcgccac gccgtcgcgc
      301 tgtcgtattt gccgatcgcg cgcgagccgt tggtcatcgc catgtcgagc gatgccgcgg
      361 ctgaactcgg gcagggcgcc gaagagtggt cggagacgcc cgtcagcctt caccaactcg
      421 ccgatgcccc gctcgtcgtc tttccacggc gtctcgcgcc cggtttctat gacatcatta
      481 tgggctgcta cggtgcggct ggcctgatgc cgcgtgtcgg gcaggaggcc atccagatgc
      541 agaccattgt cagcctggta tcggccggca tgggcgtcgc gctcgtgccg cagtcgctgc
      601 gtcatctgcg ccggaccgga gtggtgtatc gtccgttgct cgaatcgggg ccggtggttg
      661 agaccggact cgtatggcgc gcggcggagg tcagcccggt gctcgccggt tttatcgata
      721 tagtgcgcgc tcatgcggct accgtgcctg cgttgccgtg accccaacac gtaaatagaa
      781 acatgctcat tcaccccaat ttcgatccca tcgcgcttca tctcggtccg ctcgctgtgc
      841 gctggtatgg cctcatgtat ttgctggcgt tcatccagtg cattgtcatc ggccgtttgc
      901 ggctgcgctt gccgtacgtc gcagcgcaag ggtggacgac gaaggatatc gacgacatcc
      961 tgttctacgg tgtgctcggc actatcctgg gcggccggct tggctatgtg gtgttctaca
     1021 agtcgagttt ctacttcgcg aatccgctcg atatcttcaa ggtctgggaa ggcggcatgt
     1081 ccttccatgg cggcatgatc ggcgtgacgc tcgcgatggt cgtgttcgcg tggcaaagaa
     1141 agcggacctg gctgcaagtc accgatttcg tcgcaccgct ggtcccgctc ggccttgcgg
     1201 ccggtcgctt cggcaacttt atcaatggtg agttgtgggg ccgcgtgacc aatccgaatg
     1261 cgccgtgggc catgctgttc cagaacgcat cccctgacga cgccatctgg ctgcgcaccc
     1321 atccgcaaca ggccgcgcaa tggaatttga atgagatctt cgagcgttac cagatgctgc
     1381 cgcggcatcc gtcgcagctg tatgaaatcg cgctggaagg gtttgcactg tttatcgtga
     1441 tgtggctgat gtcgcgcaag cagcggccgg tgggcgctat ttcggcggtg tttctgattg
     1501 gttatggcct cgcgcgtttc acggttgaat tcgcgcgtga accggatgat tatctcggtc
     1561 tgctggc
//
LOCUS       DATGBK010000143         3933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_163656, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000143 DATGBK010000000
VERSION     DATGBK010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3933
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163656"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            31..984
                     /gene="argC"
                     /locus_tag="VKJ77_02080"
     CDS             31..984
                     /gene="argC"
                     /locus_tag="VKJ77_02080"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006053040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HMC44093.1"
                     /translation="MTTKVFVDGQEGTTGLKIFEYLSERRDVEVLRIEDARRKEVEER
                     RRLINASDVTFLCLPDVASRESVSLVNADNHRTVVIDASTAFRTHDDWAYGLPELMPA
                     QRERLRTAKRIAVPGCHASAFLLAMKPLVAGGLVSADFAAHAYSITGYSGGGKKMIAD
                     YEAGGNPRLDSPRPYALGLAHKHLPEMAVRSGLKHAPVFTPIVGNFLKGLAVTTYFSP
                     NQLSRAAKPQDVQALFAEYYANEAFVRVLPFNADSNLDDGFFDVQACNDTNRVELFVF
                     GNDERFVTVARLDNLGKGASGAAIQCMNLAIGADEESGLAR"
     gene            1488..2939
                     /locus_tag="VKJ77_02085"
     CDS             1488..2939
                     /locus_tag="VKJ77_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006053039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2957 domain-containing protein"
                     /protein_id="HMC44094.1"
                     /translation="MPYAISKGLALALATAPLFVACGGGNADNPGPINTPQCSGASCG
                     TQGAPAVGAGAAPLCPANADIVSSTYLGGAGSGEIVSLNIDAVNMKYTLKWLESPIPL
                     VTGTVNPTRKGTTIVGAVVHPPAGTLPTAEQTRCAFVLTPGGGQASDGSIYTTAAAFN
                     QANPPTIFIGQGVAGGGIPGATVQYNGATLTADGVHAIPGFPQLFPVPNRHFDFYPFI
                     GFSTVSTNVADLKGTYNALLYHLVPSNNYSTTTTQAQESFDTAGNCTVPVPASNTSCQ
                     TTGGAWTANAGGSYFTSAVAPQVQGKRSTPVLPLVGALTFPAVANANMVIGKINGAIV
                     PIVVRTGQVFVPAPLTPLNTSDAQVDDESGIAMLAPNTALTSGAFDGGYVGADSNFKY
                     TATLLQGPVGSFINPSTQASETGFGMSYAQQLPGLIGVQDQHGGQGALISAGGLYGIF
                     IAGSTVNGGLTSTSANTDTPASPYFGIGALLSK"
     gene            3077..>3933
                     /locus_tag="VKJ77_02090"
     CDS             3077..>3933
                     /locus_tag="VKJ77_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2957 domain-containing protein"
                     /protein_id="HMC44095.1"
                     /translation="MGAAVASVTPFLGGCGGGSDAPQAPVVRLCPASLDYTTTFTGGG
                     GSGELIKLQLDTTKLTWQVTYVESPIPAVTGTVSPTRAGTSQNGTLTMETGLPTQKLN
                     QCAYQLNGATLDPTRPARIFVGEGVAGGTIPGKELQFGGILGQGVVPDRTFPYYPFIG
                     FSTLETNLANVAGTYSQLGYHEIPSQDYARISVDSKITINADGTWQECDNTGVNAGKC
                     SQAGSNFAQSPDGSGAFVTNNFLGQGNPTLAAGPLGKGYMIVGKLRGQNVPILVRTGT
                     ANATITTGIP"
BASE COUNT          788 a         1231 c         1175 g          739 t
ORIGIN      
        1 tccgggcgcg accgacccag cgagatcgag atgaccacga aagtatttgt cgacggacag
       61 gaaggcacca ccggcctgaa gattttcgaa tatctgtccg agcggcgtga cgtcgaggtg
      121 ttgcgtatcg aggacgcacg acgcaaggag gtggaggagc gccggcggct gatcaatgcg
      181 tcggacgtta cgttcctgtg cctgccggac gtcgcttcac gcgaatcggt ttcgctggtg
      241 aacgcggaca atcaccgcac ggtggtgatt gacgccagca cggcgttccg cacgcacgac
      301 gactgggcat acggccttcc cgaactcatg ccggcgcagc gcgagcgtct gcgcacggcg
      361 aagcgcatcg cggtgccggg ttgtcacgcg tcggcgttcc tgctggcaat gaagccgttg
      421 gtggcaggcg gtcttgtttc cgccgatttc gccgcgcacg cgtattccat caccggttac
      481 agcggtggtg gcaagaagat gatcgcggac tacgaagcgg gcgggaatcc gcggctcgac
      541 agcccgcggc cttacgcgct gggtcttgcc cacaagcatc tgccggaaat ggcggtgcgc
      601 tcggggctca agcacgcgcc ggtgttcacg cctattgtcg gcaacttcct gaagggcctc
      661 gccgtcacca cgtacttctc gcccaatcaa ctgtcgcgcg ccgccaagcc ccaagacgta
      721 caggcgttgt ttgccgagta ctacgcgaac gaagcgttcg tgcgcgtgtt gccgttcaat
      781 gcggacagca atctcgacga cggcttcttc gacgtccagg cctgcaacga caccaaccgg
      841 gtcgaactgt tcgtcttcgg caacgacgaa cggtttgtca ccgttgcccg gctggataac
      901 ctgggcaaag gtgcgtccgg cgcggcgatc cagtgcatga accttgcgat cggcgccgac
      961 gaagaatccg ggctcgcgcg ctaagctgac tatcgactcc agcaaaagct gagcgcgcca
     1021 gacgctcaac ctagctaaaa agtaaaagcc ggtttccgcc attgtgcgaa accggctttt
     1081 tcacgtctgc gttttttcag ctgcattttt actcccgcat ttctattcac acgatcggcg
     1141 cctcggcctg gttttcaaat ccccccttgc aaattcctcg caggtcaaac agaacttcag
     1201 ccacgatttt catagggatt atcctaattt atttacgaac gttcgttcgt cgatgattac
     1261 gcgttttcgc acttaaactt tcttcgtttt gcatcgtatt gaaatgaatt ttctccaatt
     1321 taccttgcgg ataaactttt gtttcaatgc gccgtctgcg ccttatcagt caaggccccg
     1381 tcggaacact gctgtttgaa tcgacgattt agatgtttca gtcggttgac acacgaaaag
     1441 gtcacagcga aattacacgc gcaaaactag ataagggaga cagcggtatg ccgtatgcca
     1501 tttcgaaagg actcgcgctc gcacttgcga ccgcgccgtt gtttgttgcg tgcggtggcg
     1561 gcaacgccga caacccgggt ccgatcaaca cgccgcaatg ttccggcgcg agttgtggca
     1621 cgcaaggcgc gcccgctgtc ggtgcaggtg ccgcgccgct atgcccggcc aacgcggaca
     1681 ttgtctcgag cacgtatctg ggcggcgcgg gcagcggcga gatcgtgagc ctgaacatcg
     1741 acgccgtgaa catgaaatac acgctgaagt ggctcgaatc gccgattccg cttgtcaccg
     1801 gtaccgttaa tccgacccgc aagggcacga cgatcgtcgg cgcagtggtg cacccgccgg
     1861 caggcacgct gcccacggct gagcaaacgc gttgcgcgtt cgtgctgaca ccgggcggtg
     1921 gccaggcatc ggatggatcg atctacacca ccgcggccgc gttcaaccag gcgaacccgc
     1981 cgaccatctt tatcggccag ggcgtggctg gtggcggcat tccgggtgcg accgtgcagt
     2041 acaacggcgc gacgctgacc gctgacggcg ttcacgccat ccccggtttt ccacaattgt
     2101 tcccggtgcc gaaccggcac ttcgacttct atccgttcat cggtttctca acggtgagca
     2161 cgaacgtcgc ggatctcaag ggcacgtata acgcgctgct gtaccacctg gttccatcga
     2221 ataactactc gaccacgacc acacaggcac aggaatcctt cgataccgcc ggcaactgca
     2281 cagtgcccgt gccggcatcg aatacgtctt gccagacaac cggcggcgcg tggacggcga
     2341 acgccggcgg gtcgtacttc accagcgcgg tcgcgccgca agtgcagggc aaacggtcga
     2401 cgcccgtgtt gccgctcgtc ggtgcgctca cgttcccggc ggtggcgaac gcgaacatgg
     2461 tgatcggcaa gatcaacggc gcgatcgtgc cgatcgtcgt gcgtacgggc caagtcttcg
     2521 tgcccgcgcc gctcacgccg ctgaacacat cagacgcaca agtcgacgat gaatccggca
     2581 tcgccatgct cgctccgaac acggcgctta cgtcgggcgc gttcgatggc ggttatgtcg
     2641 gcgcggattc gaacttcaag tacacggcga cgctgctgca aggtccggtc ggctcgttca
     2701 tcaatccatc gacgcaggcc tccgagaccg gtttcggcat gagctacgca cagcaattgc
     2761 ccggcttgat cggcgtgcaa gaccagcacg gcggccaggg tgcgctgatc tcggcgggtg
     2821 ggctgtacgg gattttcatt gccggcagca cggtgaacgg cggcctgacc tccacgtccg
     2881 ctaacaccga cacgccggcg agcccgtact tcggtatcgg cgcgctgctc agcaaataag
     2941 cactgccgag cacacaaaac gcacagaagc actcaagacc agggcagccg gcacacgccg
     3001 gctaccgacg aaagacgaac gaacaaatgt ggatggagac agcagtatga aatggagaac
     3061 ttttgcgttg ggtgcgatgg gtgcggcagt cgccagcgtc acgccgttcc ttggcggctg
     3121 cggcggtggc agcgatgcgc ctcaggcgcc ggtcgtccgg ctatgcccgg catcgcttga
     3181 ctacacgacc accttcaccg gtggcggcgg cagcggcgaa ctcatcaagc tgcaactcga
     3241 cacgacgaaa ctcacgtggc aagtgaccta tgtggaatct ccgattccag ccgtcaccgg
     3301 cacggtctct cccacccgcg ccggcacgtc gcagaacggc acgctgacga tggaaaccgg
     3361 cttgcccacg caaaagctca atcagtgcgc gtaccagttg aacggtgcga cgctcgaccc
     3421 gacgcgtccc gcgcgcatct tcgtgggcga aggagtggcg ggcggcacga tcccgggcaa
     3481 ggaactgcag ttcggcggga ttcttgggca gggcgtggta cccgatcgga cattcccgta
     3541 ttacccgttc atcggttttt cgacgctaga aacgaatctc gccaatgtcg ccgggacgta
     3601 tagccaactg ggctatcacg agattccgtc gcaagactac gcgcgcatct ctgtcgattc
     3661 gaagatcacc atcaatgccg atggcacctg gcaagagtgc gacaacaccg gtgtgaacgc
     3721 cggcaaatgc agccaagccg ggtcgaactt cgcacaatcg cctgatggca gcggcgcgtt
     3781 cgtcaccaac aacttccttg ggcaaggcaa cccgacgctc gcagccggtc cgctgggcaa
     3841 gggctacatg atcgtgggca agctgcgtgg ccagaacgtg ccgatcctcg tgcgtaccgg
     3901 cacggcgaac gccacgatca ccacgggcat tcc
//
LOCUS       DATGBK010000144         1733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_325671, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000144 DATGBK010000000
VERSION     DATGBK010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325671"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VKJ77_02095"
     CDS             <1..263
                     /locus_tag="VKJ77_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF615 domain-containing protein"
                     /protein_id="HMC44096.1"
                     /translation="DDAALTEFIRQHPGVDPQEGRTLIRNARKEREQAKPPRYFRELF
                     QWIKTAAGVEDEDDESLIEGEAEDEDEGVEFPEREDDDGYKA"
     gene            247..867
                     /gene="mog"
                     /locus_tag="VKJ77_02100"
     CDS             247..867
                     /gene="mog"
                     /locus_tag="VKJ77_02100"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HMC44097.1"
                     /translation="MATKRNHPDELVIGLVSISDRASQGVYEDKGIPSLQEWLASALS
                     SPWRAETRLIQDDAATISATLIELVDETGCDLILTTGGTGPSRRDVTPEATLAVATKP
                     MPGFGEQMRQISLNFVPTAILSRQVAVIRETSDHAALIINLPGQPKSIRETLEGLRET
                     DSKPKVPGIFAAVPYCIDLIGGPYMETRPEVVAAFRPKNAIRPPKS"
     gene            complement(880..1509)
                     /gene="orn"
                     /locus_tag="VKJ77_02105"
     CDS             complement(880..1509)
                     /gene="orn"
                     /locus_tag="VKJ77_02105"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HMC44098.1"
                     /translation="MADSVLDPASSASSSDLVRSDMNLVWLDMEMTGLEPDTDRIIEI
                     AVVVTNSTLDKLVEGPVLAIHQDETALGKMDEWNRNTHGRSGLTERVRASTVDEAEAT
                     RQIREFLGQYVPPGKSPMCGNSICQDRRFMARWMPELETFFHYRNLDVSTLKELCRRW
                     QPAIYKGFQKRAMHTALADIHESIDELKYYREHFLIPSAAGNATSTTPV"
BASE COUNT          368 a          521 c          519 g          325 t
ORIGIN      
        1 ccgacgacgc tgccctgacc gaattcatcc gccaacatcc aggcgtcgac ccgcaagaag
       61 gccgcacgct gatccgcaac gcccgcaagg aacgcgaaca ggccaaaccg ccgcgctatt
      121 tccgcgagct gttccaatgg atcaagactg cggcgggcgt ggaagacgaa gatgacgaga
      181 gcttgatcga aggcgaagcc gaagacgaag acgaaggcgt cgaattcccg gaacgagaag
      241 acgacgatgg ctacaaagcg taaccatccg gacgaattgg tgattggcct ggtgtcgatc
      301 agcgaccgcg cttcgcaggg tgtgtacgag gacaagggca ttccatcgct gcaagagtgg
      361 ctcgcgagtg cactgagttc gccctggcgc gccgaaaccc ggctgattca ggacgacgcg
      421 gcgactattt cggccacgct gatcgaactc gtcgatgaaa ccggctgcga tctgatcctg
      481 accaccggcg gcacaggccc gtcgcgccgc gacgtgacgc cggaagccac gctcgcagtc
      541 gccacgaagc caatgcccgg tttcggcgaa caaatgcgcc agatcagcct gaatttcgtg
      601 ccgacagcca ttttgtcgcg acaagtggcc gtgattcgcg agacgtcgga tcacgcggcg
      661 ctgatcatca atttgcccgg acagccgaaa tcgatccgcg aaacgctgga aggactacgc
      721 gagaccgaca gcaaacccaa ggtacccggc atttttgccg ccgtgcctta ttgcatcgat
      781 ctgatcggcg gtccgtacat ggaaacgcgg cccgaagtag tggccgcgtt caggccgaaa
      841 aacgcgatcc ggccgccaaa atcctgaccg gctacgcgct taaaccggcg tggtcgacgt
      901 ggcattgccc gccgccgacg gaatcaggaa atgctcgcgg tagtacttga gttcatcgat
      961 ggattcgtgg atatcggcga gcgccgtgtg catcgcgcgc ttctgaaaac ccttgtagat
     1021 ggccggctgc cagcggcggc acaactcctt gagcgtgctg acgtcgaggt tgcgatagtg
     1081 aaaaaacgtt tccagttcgg gcatccaccg ggccatgaaa cgccgatcct ggcagatgga
     1141 attgccgcac atgggcgact tgcccggcgg cacatactgg cccaggaatt cccggatttg
     1201 ccgcgtggct tctgcttcat ccaccgtcga tgcccgcacg cgctccgtca gtcccgaccg
     1261 gccgtgcgtg ttgcgattcc actcatccat cttgcccagc gccgtttcgt cctggtggat
     1321 cgcgaggacc ggcccttcca cgagtttgtc gagcgtcgaa ttcgtcacca ccaccgcaat
     1381 ttcgataatg cggtcggtat cgggttcaag acccgtcatc tccatgtcga gccacacgag
     1441 attcatgtcg ctgcgaacga ggtcggagga gcttgcggaa gaagcgggat cgagcacgga
     1501 atcggccata tgagggcaac ctgagagggg tttgacgcgg gtttcacgcc ttgccaggcg
     1561 cggttttgga tatcgaacac agaccgcgcg cggagacggt caagaaccta taattctcgc
     1621 ataattcaat cgcgcatatt tcaatcgggt ttccgctgat gtccaatttc aatctcgctt
     1681 tctcggtcgt gttcgtcgta gcgctggtcg gcatggtcgg caccaagctg tgg
//
LOCUS       DATGBK010000145         1775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_302375, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000145 DATGBK010000000
VERSION     DATGBK010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302375"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..1374)
                     /locus_tag="VKJ77_02110"
     CDS             complement(175..1374)
                     /locus_tag="VKJ77_02110"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009932860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid aminotransferase"
                     /protein_id="HMC44099.1"
                     /translation="MSLFSAVELAPRDPILGLNEAFNADPRTTKVNLGVGVYFNEEGK
                     IPLLRAVREAEKARTELAAPRGYLPIEGIAAYDAAVQKLLLGNDSQLIADGRVITAQA
                     LGGTGALKIGADFLKRLNPTGKVAISDPSWENHRALFEYAGFEVANYPYYEAATHGVK
                     FDAMLEAFNSYPAGTVVVLHACCHNPTGVDLTPAQWQQVVETVKARSLVPFLDIAYQG
                     FGDGLDADGSAVRLFALSGLPLLVANSFSKSFSLYGERVGSLSVVTGSSEESARVLSQ
                     IKRLVRSNYSSPPTHGGKIVATVLAAPELRALWVQELGQMRERIKAMRKLLVEKIHAR
                     VPGADFSFVTRQRGMFSYSGLTREQVVRMRDEFAVYAIESGRICVAALNTKNIDYSAD
                     AIAKVIA"
     gene            complement(1464..>1775)
                     /locus_tag="VKJ77_02115"
     CDS             complement(1464..>1775)
                     /locus_tag="VKJ77_02115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44100.1"
                     /translation="RIVGTGFRRFAPTFAQCPMFSRWGGTAKSQVIVLVSESLRTIFR
                     HAATRRPDFRKKPENSPKKIAKSRVSSISPSRKAAANSLQCRTGVFIDGTEFCWLLLA
                     P"
BASE COUNT          357 a          514 c          546 g          358 t
ORIGIN      
        1 cggacctgcg gattaacagt ccgtcgctct accggctgag ctatcgggga acggtgaacc
       61 cggttgggcc aggttcagga aggcgcgtat tttaatggct gcgagtggct gggtcaattg
      121 aatttgcggt gcgatcagga cggaaaggta tcccgcgctg cggttgcgct ttaatcaggc
      181 aattactttg gcgatggcgt cggcagaata gtcgatgttt ttggtgttga gtgccgccac
      241 gcaaatgcgc ccgctctcga tcgcatagac cgcgaattcg tcgcgcatgc gcaccacctg
      301 ctcgcgcgtc aggccggaat aggagaacat gccgcgctgg cgcgtgacga aactgaagtc
      361 ggcgccgggc acgcgcgcgt ggatcttctc caccaggagc ttccgcatgg ccttgatgcg
      421 ttcgcgcatc tgccccagtt cctgcaccca cagcgcgcgc agttccggcg ccgcgagcac
      481 ggtagccacg atctttccgc cgtgggtcgg cgggctggag tagttgctgc gcaccaggcg
      541 cttgatctgc gacaggacgc gcgcgctttc ctcgctagat ccggtgacca cgctcagact
      601 gcctacgcgc tcgccataga gcgagaacga cttggaaaac gaattcgcca cgagcagcgg
      661 caggccgctc agggcaaaga gccgcacggc gctgccgtcg gcatcgaggc cgtcgccgaa
      721 accctgatag gcgatgtcga ggaacggcac caacgagcgc gccttgaccg tttcgacgac
      781 ctgttgccat tgtgccgggg tcaggtcgac gccggtcggg ttgtggcagc acgcgtgcag
      841 taccacgacc gttccggccg ggtagctgtt gaacgcttcc agcatggcgt cgaatttcac
      901 gccgtgcgtg gctgcctcgt agtacgggta gttcgcgact tcaaaacccg cgtattcgaa
      961 caacgcgcga tggttttccc agctcgggtc gctgatggcg actttgcccg tgggattcag
     1021 ccgcttcagg aagtcggcgc caatcttgag cgcgcccgtt ccacccagcg cctgagccgt
     1081 gatcacgcgg ccgtcggcga tcagctgcga atcattaccg agtagcagct tttgcacggc
     1141 tgcgtcataa gcggcaatgc cttcaatggg cagataacca cgcggcgcgg cgagttccgt
     1201 acgcgctttt tcggcttcgc gaacggcacg caggagcgga atctttcctt cttcgttgaa
     1261 atacacgccc acgccgagat tgaccttggt cgtgcgcgga tcggcgttga aggcttcgtt
     1321 caggcccaga atcgggtcac ggggagcaag ctcgacggct gagaaaagag acatgattta
     1381 tcggcggtag tggataaggc ggcacgggcg atcgggatgg gaaatccgct gctcaaccgc
     1441 taaaaagcgg tgcaaaccgg acctcaagga gccaacagga gccaacaaaa ctccgtccca
     1501 tcgatgaaaa ccccagttcg gcattgtaac gaattggccg cggcttttcg gctcggcgaa
     1561 atggaagaaa cgcgggattt agctattttt ttcggggaat tttctggttt tttacgaaaa
     1621 tcaggacgac gggtcgccgc gtgacggaat attgtcctca agctttcact aaccaaaaca
     1681 atcacttgcg atttcgcggt gccgccccat cttgaaaaca tcgggcattg tgcgaaagtt
     1741 ggcgcaaatc gcctgaaacc tgttccgaca atcct
//
LOCUS       DATGBK010000146         1661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_25006, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000146 DATGBK010000000
VERSION     DATGBK010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25006"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..746)
                     /locus_tag="VKJ77_02120"
     CDS             complement(<1..746)
                     /locus_tag="VKJ77_02120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006025922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HMC44101.1"
                     /translation="MGFGMIIIGDEILSGRRTDKHLPKVIELLSARGLSLDWAEYVGD
                     DRERITPTLKRAFASGDIVFSTGGIGATPDDHTRQCAAAALGVPLELHPEAAELIRAR
                     IKETAGDKPVDLDLPENLHRLNMGTFPKGASIIPNSYNRIPGFSAGNIHFVPGFPVMA
                     WPMIEWVLDNKYAELHHATPYIERSVLVFGLPESRITPLMEAIERDFAGVRVFSLPSV
                     GDATRGEVFGRAHIDLGVKGEPDAANAAFAR"
     gene            complement(769..1626)
                     /locus_tag="VKJ77_02125"
     CDS             complement(769..1626)
                     /locus_tag="VKJ77_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HMC44102.1"
                     /translation="MNDLLRSFVRALANAFHPRMLWLTFMPFAVATVAWGAVLWFFWQ
                     TLTGAARNWLDGWALTSAMYRLFDSIGFSSLHAVIAPFFIVIMAIPLIVVTILLLIAT
                     LSMPSVIKLLTRRQYASLEMRHGGSWYGSLGHSVVTTVVCLVLLVVTLPLWLIPPFFA
                     IIPPVLWGWLTYRVMTYDALALHASAEERRAIVRRARWPLFGIGVISGLLGSLPTMLW
                     AWSVWLLPLFPVVAAATIWIYAFILVFSALWFAHYCLHALERLRTEHTGASPPLTGPG
                     AAAELRISG"
BASE COUNT          409 a          524 c          457 g          271 t
ORIGIN      
        1 cgggcgaacg cggcattcgc tgcgtccggc tcacctttga ccccgagatc aatgtgagcg
       61 cgcccaaaga cctccccgcg cgtcgcgtcg ccgacgcttg gcaggctgaa aacacgcacc
      121 ccggcgaaat cgcgttcgat cgcttccatc agcggcgtta tacgcgattc cggcaacccg
      181 aagaccagca ctgaacgctc tatataaggc gttgcgtgat ggagctccgc gtatttgttg
      241 tccagcaccc actcaatcat gggccacgcc atgacgggga aaccaggcac gaaatggatg
      301 ttccctgctg aaaagccggg aatccggttg tagctatttg gaatgatgct cgcgcccttt
      361 gggaacgtgc ccatgttcaa ccgatgcagg ttttccggca ggtcgagatc caccggcttg
      421 tcgcccgccg tttccttgat ccgcgctcgg atcagttcgg ccgcttccgg atgcagctca
      481 agtggcaccc caagcgcagc ggccgcacat tggcgcgtgt ggtcatcagg cgtggcacca
      541 atcccgcccg ttgaaaatac gatatcgcct gacgcgaacg cacgcttgag cgtaggcgtg
      601 atgcgttcac ggtcgtcgcc aacatattcc gcccagtcca gcgacaaccc cctcgccgac
      661 aacaattcga taacttttgg cagatgcttg tcggtccttc gaccggacaa tatttcgtcg
      721 ccaatgatga tcatgccaaa gcccataaat gctccctgat cttgaagatt agcctgaaat
      781 tcgcaactcg gccgccgcgc cgggaccggt caacggaggc gacgcaccag tatgttccgt
      841 ccgcagtcgc tccagtgcat gcaggcaata gtgcgcgaac caaagcgccg aaaaaacgag
      901 gatgaatgca tagatccaga tcgttgccgc cgcgacgacc ggaaacaagg gcaacagcca
      961 gaccgaccac gcccatagca tggtcggcaa cgacccaagc agcccgctga tcacgccgat
     1021 cccgaacagc ggccagcgcg cacgacgcac gatagcgcgc cgctcctctg cgctcgcatg
     1081 caacgcgagc gcgtcatacg tcatgacgcg gtatgtcagc cagccccata acacgggcgg
     1141 aatgatcgcg aaaaacggcg ggatcagcca cagcggcaac gtcacgacca ggagaacgag
     1201 acacacgacc gttgtgacca ctgaatgccc gagactcccg taccaggagc cgccgtgccg
     1261 catttcaagc gatgcgtact gacgccgcgt tagcagcttg atcacagaag gcattgaaag
     1321 cgtcgcgatg agcaacaaaa tggtgacgac aatcaacgga atcgccatga tcacgataaa
     1381 aaacggcgca atcaccgcgt gtagcgacga aaacccgatc gaatcgaaga gccggtacat
     1441 tgccgacgtt aacgcccagc catcaagcca gttgcgcgcg gcgcccgtca gcgtttgcca
     1501 aaaaaaccac aggacggcgc cccatgcaac ggtcgccaca gcgaacggca tgaacgtcag
     1561 ccaaagcatt ctcgggtgaa aagcgttcgc gagcgcgcgc acgaacgaac gcagcaagtc
     1621 attcatgcaa aggtcgtctg aaagggaaag aagacaggat a
//
LOCUS       DATGBK010000147         1579 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_140751, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000147 DATGBK010000000
VERSION     DATGBK010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140751"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..1058
                     /locus_tag="VKJ77_02130"
     CDS             159..1058
                     /locus_tag="VKJ77_02130"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016834131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC44103.1"
                     /translation="MKNEVIAFLGTGLMGEPMARNLLAAGYGVRAWNRSKEKASALAE
                     KGAVVCDTPADAAQGANVLICMLSDGPTCDAVVFHDKAVLAALSAGGTVIVMSSIPVE
                     TAVEQSRMSAERGFRYLDAPVSGGQQGAIDATLAIMAGGELDTFEAVRELLGAMGRPV
                     RVGPAGTGQQTKLANQLIVANTIAAVAEALLFAERGGADPAKVIEALAGGFADSPILR
                     MHGRRMIDESFAPGGAVKYQLKDTRTALARARSLGLELPVAHIVDALFASMVDHGDGD
                     LDHSALIREIRRENNLPVSRKDS"
     gene            complement(1074..>1579)
                     /locus_tag="VKJ77_02135"
     CDS             complement(1074..>1579)
                     /locus_tag="VKJ77_02135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004543221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC44104.1"
                     /translation="SNETIIDAPDEKWQSYWDLHVMAAVRLARGLVPLMKVRGGGAIL
                     NNASICATQPLGYEPIYNVTKAALMMLSKNLANELIKDNIRVNTINPGLVLTPDWIKT
                     AKELTRDSGGDWEAHLQHVADEHAPIRRFATPAELASFIVFLCSERASYSVGSTYFVD
                     GGMLKTV"
BASE COUNT          288 a          461 c          523 g          307 t
ORIGIN      
        1 gctacaaact tccgctcacg cataaagtcg cacgagcgct tcgcggttca ccgccacgat
       61 ctggttggtc ggcgcggtgg ggtgggtgcg ccgctgttgc cgcgccgttc cggatcggcg
      121 accatgccga tagtgactac cgcacaacga ggtgacgcat gaagaacgag gtgattgcat
      181 ttctgggtac tggcctgatg ggtgagccga tggcgcgcaa tctgctggcg gccgggtatg
      241 gcgtgcgagc ctggaatcgc tcgaaggaaa aggcttcggc gctcgctgaa aagggggccg
      301 tcgtttgcga tacgccggcc gacgccgcgc aaggtgcgaa cgtgctcatc tgcatgctga
      361 gcgatggtcc gacctgcgac gctgttgtat tccatgacaa ggctgtcctg gctgcgctca
      421 gcgcaggcgg gacggtgatc gtgatgagtt cgatccccgt agagaccgcc gttgaacagt
      481 cgcgaatgag cgccgagcgt ggctttcgtt atctcgatgc gccggtgtcg ggaggccagc
      541 aaggcgccat tgatgcaacg ctcgcgatca tggccggcgg cgaactggat accttcgagg
      601 cagtgcgcga actgttgggt gcaatgggtc gcccggtgcg cgtcggcccc gccggaacag
      661 ggcagcagac caagctcgcg aatcagttga tcgtggcaaa cacgattgca gccgtggccg
      721 aagctttgtt gttcgccgag cgtggcggcg cggacccggc gaaggtcatc gaggcgcttg
      781 ccggtggctt tgcagattcg ccgattttgc gcatgcacgg acgacgcatg atcgacgaat
      841 cgttcgcacc cggtggtgcc gtgaagtatc agttgaagga cacgcggacc gcattggcgc
      901 gggcgcggtc cctcgggctg gagttgccgg tggcgcacat cgtggatgcg ctgttcgctt
      961 caatggtcga tcacggcgac ggcgatctcg accatagcgc gctcattcgc gagatccggc
     1021 gggagaacaa cttgccggtg agtcgtaaag atagttgagc gcaagggcac gcgtcacaca
     1081 gtcttcagca tcccgccatc gacgaaataa gtcgatccca cgctatagct cgcccgctcc
     1141 gaacacagga agacgataaa gctcgccagc tcggcgggcg tagcgaagcg gcggatgggc
     1201 gcgtgttcgt cggcgacgtg ttgcagatgc gcttcccagt caccgcccga atcgcgcgtc
     1261 agttccttgg ccgtcttgat ccagtcgggt gtcagcacaa gcccgggatt gatcgtgttg
     1321 acgcggatgt tgtccttgat cagctcgttc gccagattct tcgacagcat catcaacgcg
     1381 gctttcgtca cgttgtaaat gggctcgtag ccgagcggct gcgtcgcgca tatcgacgcg
     1441 ttgttcagga tcgcaccacc gccacgcacc ttcatcaaag gcacgagacc acgcgcgagg
     1501 cgcacggccg ccatcacgtg aaggtcccaa taggactgcc acttctcatc gggcgcgtct
     1561 atgatggtct cgttgctgc
//
LOCUS       DATGBK010000148         1861 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_163786, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000148 DATGBK010000000
VERSION     DATGBK010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163786"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..597)
                     /locus_tag="VKJ77_02140"
     CDS             complement(<1..597)
                     /locus_tag="VKJ77_02140"
                     /EC_number="3.5.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase"
                     /protein_id="HMC44105.1"
                     /translation="MTSSVEPAMFANFLDFVLDGKKPALTEGTLPSGVKWTWLGDGIV
                     RFEPEGAVGQSVVASAGIHGDETAPIEILSLLVADIASGKAVLKSRVLVIFGNIDAMR
                     ASCRYRDDDLNRLFNGRYLELAASHEAPRAAELESVTRAFFAGADGDATHAKWHIDMH
                     TAIRPSVFEQFALLPHTGAPLSRVMFDWLQDAGLSAVLL"
     gene            complement(581..>1861)
                     /gene="astB"
                     /locus_tag="VKJ77_02145"
     CDS             complement(581..>1861)
                     /gene="astB"
                     /locus_tag="VKJ77_02145"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006025855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009015 - N-succinylarginine dihydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HMC44106.1"
                     /translation="SFGNVASRNNEKSAANPKAAAKQGLRKMKQLADLGFHQGVLPPL
                     ERPSLKLLRSLGFTGDDATVVERAAREAPELLAAASSASAMWTANAATVSPSADTNDG
                     RVHFTPANLSTKLHRAIEHEETRRSLSAIFSDEKHFRIHHALPGTPALGDEGAANHTR
                     FCNEYGEKGVEFFVYGRSEYAQGSAEPKRFPARQTLEASRAVARLHGLSDDATVFAQQ
                     LPDVIDAGVFHNDVIAVGNRNTLFCHQRAFLDQGSVYDQLRAKLETHGGAFTAIEVPE
                     DEVSVADAVSSYLFNSQLLTRPDGRQVLVVPQECRENARVAKYLDSLHARSTSIDEVL
                     VFDLRESMKNGGGPACLRLRVVLNDAERIAVNPGVWMNDALFAQLDAWIDTHYRDRIA
                     PADLADLKLLDESRAALDALTGILKLGAIYDFQR"
BASE COUNT          379 a          596 c          538 g          348 t
ORIGIN      
        1 cagcaatacg gccgacaacc ccgcatcctg caaccagtcg aacatcacgc gcgacagcgg
       61 cgcgcccgtg tgaggcagca acgcaaactg ctcaaacacc gaagggcgga tggcagtgtg
      121 catgtcgatg tgccacttcg cgtgtgtagc gtcgccgtca gctccggcaa aaaacgcacg
      181 cgtcacactc tcgagttccg cagcacgcgg cgcttcatga cttgccgcaa gctcgagata
      241 gcggccgttg aacaggcggt tgagatcgtc gtcgcgatac cggcaagacg ctcgcatcgc
      301 gtcgatgttg ccgaagatga ccagcacgcg gctcttcagc accgccttgc cgctcgcgat
      361 atccgcgacg agcagcgaca ggatttcgat cggtgcggtt tcatcgccat gaatccccgc
      421 cgatgccacc acgctttgcc ccaccgcgcc ctcgggttca aagcgaacaa tgccgtcgcc
      481 cagccacgtc cacttcacac cgcttggcaa cgtgccttca gtcagcgcgg gcttttttcc
      541 atcgagcaca aagtcgagaa agttcgcgaa catggccggc tcaacgctgg aagtcataga
      601 tagcaccaag cttgagaatc ccggtaagcg catcaagcgc cgcgcgtgat tcatcgagga
      661 gtttcagatc ggcgagatcg gcgggcgcaa tgcggtcgcg ataatgcgtg tcgatccagg
      721 catcgagttg cgcgaacaac gcgtcgttca tccacacccc ggggttcacc gcgatgcgct
      781 ccgcatcgtt gagcaccacg cgcaagcgca agcaagcagg accaccgccg ttcttcatgc
      841 tttcgcgaag atcgaagacg aggacctcgt caatagaagt ggaccgtgca tgcaacgaat
      901 caaggtactt ggcgacccgc gcgttttccc ggcactcctg cggcacgacc agtacctgcc
      961 tgccgtcggg ccgtgtcagc aactggctgt tgaacagata cgacgagaca gcatcggcca
     1021 cgctgacttc gtcttccggc acttcgatag cggtgaacgc gccgccatgt gtttcaagtt
     1081 tcgcgcgaag ctggtcgtac acgctgccct gatccaggaa cgcccgttgg tggcaaaaca
     1141 gcgtgttgcg attgcccacg gcgatcacgt cgttatgaaa cacgcctgca tcgatcacat
     1201 caggaagctg ctgcgcgaac acggtggcgt cgtcggaaag accgtgaagg cgcgcgaccg
     1261 cgcggcttgc ttccagcgtt tggcgtgcgg gaaaacgctt cggttctgcc gaaccctgag
     1321 catattcgct gcgtccgtag acgaaaaact ccacgccctt ctcgccgtac tcgttgcaaa
     1381 aacgcgtgtg atttgccgcg ccttcatcgc ctaacgcggg cgtgcccggc aacgcatgat
     1441 gaattctgaa atgcttctca tcggagaaaa tagccgagag tgagcggcgc gtttcttcat
     1501 gctcgatcgc acgatgcaac ttcgtgctca ggttggccgg cgtgaaatgc acgcgcccat
     1561 cgttcgtatc cgccgatggg ctcacggtcg ccgcgttcgc ggtccacatt gccgaagcgg
     1621 aactcgcagc ggccagcaac tccggcgctt ctcgcgcagc gcgttcgact accgtggcgt
     1681 cgtcaccggt gaaaccaagg ctgcgcagca acttgagcga cggccgttcg agcggtggca
     1741 gcacgccctg gtgaaatcca aggtcggcca actgcttcat cttgcgcaga ccctgcttcg
     1801 ccgcggcctt cggattggcg gccgatttct cattgttgcg cgacgcgaca ttgccgaacg
     1861 a
//
LOCUS       DATGBK010000149         2362 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_94509, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000149 DATGBK010000000
VERSION     DATGBK010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94509"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(349..1536)
                     /gene="metK"
                     /locus_tag="VKJ77_02150"
     CDS             complement(349..1536)
                     /gene="metK"
                     /locus_tag="VKJ77_02150"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006024140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HMC44107.1"
                     /translation="MSNDYFFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAE
                     TLCNTGLVVLAGEITTQANVDYIQVARDTIKRIGYDNTEYGIDYRGCAVLVAYDKQSR
                     DIAQGVDAAHDDNLDQGAGDQGLMFGYACDETPELMPLPIHLAHRLVERQANMRRDGR
                     LNWLRPDAKSQVTVRYVDGKAHSIDTVVLSTQHAPDIELKALREAVIEEIIKPVLPAE
                     LIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDR
                     SAAYAGRYVAKNIVAAGLASRCLIQVSYAIGVARPTSVMVNTFGTGRVSDARIQELVL
                     EHFDLRPKGIIQMLDLLRPIYEKSAAYGHFGREEPEFSWEATDKALLLAEAAGTEPVV
                     ETV"
     gene            1830..>2362
                     /locus_tag="VKJ77_02155"
     CDS             1830..>2362
                     /locus_tag="VKJ77_02155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012214344.1"
                     /note="Acylates the intermediate (KDO)2-lipid IVA to form
                     (KDO)2-(lauroyl)-lipid IVA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HMC44108.1"
                     /translation="MLGRIGVALAVGFLKLLALIPYGITARFGDGLGWLLYQVPSHRK
                     RIVHINLSLCFPEWTPERREEVAQKHFRHAIRSYVERSVQWFGSAEKLAKLIEVDSEV
                     DLLDPDMPPTLLLGFHFVAIEAASVWINYSLHRPCGSLYQPMSNKALDDIAKKQRGRF
                     DAEMASRADSARIVLRWL"
BASE COUNT          467 a          721 c          684 g          490 t
ORIGIN      
        1 aaccaacgca attacgcgcg cccgtggcta aattgaaatt ggcgcccggt gtaattaata
       61 cgacaagccg tcgtccgcgc aggctttcga ccagcgacgg atggtttgcg tttgctgttc
      121 gctgattatt cctgaagacg cgggccgaag tccgggctca gcgcccctta tacgtgtgcc
      181 gttttgccgc tgtgagcatt ggatgaagca gagcgtttcg gcgcgctgcc gaacctggcg
      241 atgcacggct ggcgtccaac tgcataggaa tgcgtgataa cagtgcccta aaaaaatccc
      301 gctgagcgta gcgctcagcg ggatttttta caaactcaaa ccagcaactc agaccgtttc
      361 aacaaccggt tccgttccag cggcttccgc cagcaggagc gccttgtccg tggcttccca
      421 cgagaattcc ggctcttcac ggccgaagtg gccatacgct gccgactttt catagatagg
      481 acgcagcaag tcgagcatct ggatgatgcc tttcggacgc aggtcaaaat gctcgagcac
      541 gagttcctgg atccttgcat cggacacgcg acccgtgcca aacgtgttga ccatgaccga
      601 agtcggacgc gcgacgccga ttgcgtagga cacctggatc aggcaacgcg aagccagccc
      661 tgccgcgaca atgttcttcg cgacataacg gcctgcatac gctgccgaac gatcgacctt
      721 cgacgggtcc ttgcccgaga acgcgccgcc gccatgaggt gccgcgccac cgtatgtgtc
      781 gacgatgatc ttgcgacccg tcaatccgca atcgccttgc ggaccgccga tcacgaaacg
      841 tccggtcgga ttgaccagga acttgatgtc gcccttgatc agctccgccg gcaggaccgg
      901 cttgatgatc tcttcgatca cggcttcacg cagcgccttc agctcaatgt ccggcgcgtg
      961 ttgcgtggag agcacgacgg tgtcgatgct gtgcgccttg ccatccacat aacgcacggt
     1021 cacctgggac ttcgcatccg gacgcagcca gttcaggcgg ccgtcgcgac gcatattcgc
     1081 ctgacgctcg accagccggt gcgcgaggtg aataggcagc ggcatcagtt cgggcgtttc
     1141 gtcgcatgcg tagccgaaca tcaggccctg gtcgccggcg ccctgatcga ggttgtcgtc
     1201 atgagcggcg tccacgcctt gcgcaatgtc ccgcgactgt ttgtcatacg cgacgagcac
     1261 cgcgcaaccg cgatagtcga tgccgtattc cgtgttgtcg taaccgatac gcttgatggt
     1321 gtcacgcgcg acctggatgt agtcgacgtt cgcctgcgtg gtgatttcgc ccgccagaac
     1381 gacgagaccc gtgttgcaaa gggtttcagc cgcgacgcgc gaatacttgt cctgcgccag
     1441 gatggcgtcg aggatggcgt cggagatctg gtcggctacc ttgtccgggt ggccttcgga
     1501 gacggattca gaggtaaaga aataatcgtt tgacacgctt cagactccat ttgagtacgg
     1561 gtaagttgct cacgtagccg acttcgtctg gagtctgaag cggcgacgct ttagcggaaa
     1621 acatggtccg gaaagcgccg ttaaacgcta tccagcttcg ccccgcaagt tgtccattaa
     1681 ctcggcgaag gttttattat agcggcttct cacttttgtc acagagccga acgtttgctg
     1741 ccaatcaaga cataccctca cccgcgtcat gcccggaacg ctccccggca aagtcgaaac
     1801 cccaccgtcc ggccccttgg gagcgtcgca tgttaggtcg cattggcgtc gccctcgcag
     1861 tgggcttcct gaaactgctc gccctcattc cctacggcat caccgcacgt ttcggcgacg
     1921 gtctcggctg gctgctttat caagtcccga gccatcggaa acgcattgtg catatcaatc
     1981 tcagcctgtg tttccccgag tggacacccg agcgccggga agaagtcgct cagaagcatt
     2041 tccggcacgc gatccgcagt tacgtggaac gcagcgtgca atggttcggc tcggcggaga
     2101 aactcgccaa gctgatcgag gtggacagcg aagtcgatct tctcgatccc gacatgccgc
     2161 ccacgttgtt gctcggcttt cacttcgtcg cgatcgaggc ggcttcggta tggatcaact
     2221 actcgctgca caggccctgc ggatcgctgt atcagccgat gtcgaacaaa gcgctcgacg
     2281 acatagcgaa gaagcagcgt ggtcgtttcg acgccgaaat ggcgagccgc gcagacagcg
     2341 cgcggatcgt gctgcgctgg ct
//
LOCUS       DATGBK010000150         4348 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_187021, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000150 DATGBK010000000
VERSION     DATGBK010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4348
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187021"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..1740
                     /locus_tag="VKJ77_02160"
     CDS             178..1740
                     /locus_tag="VKJ77_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HMC44109.1"
                     /translation="MNPPKNASAPAPLTGWQFALGTFAVALATFMNVLDSSIANVAIP
                     TLSGDLGVSVDEGTWVITLFAAANAVAIPLTGWLTQRVGQVKLFVTAILLFVVTSAVC
                     GLAPNLLLLLVARVVQGAVAGPLVPLSQSLLLSSFPREKSSSALSLWAMTATVGPIAG
                     PALGGWITDNYNWPWIFYINVPVGLFAAAVIWALYRKRETPSRKLPVDKLGLLSLIVW
                     VGALQVMLDKGKDLDWFNSPVIWALTIVALIAFLFFLIWELTEAKPIVDLRLFKGRNF
                     LGGTIAISIAYAVFFANLVILPTWIQESLGYRAVDAGLVTAPLGIFAVILAPVMGKIM
                     PKSDVRVLATLAFLGFAGVFMMRSWYTTDIDAYTLVLPTLLQGIPMALFFTPLTAIIL
                     SGLPPEKIPAAAGLSNFARIFAGAAGTSLMSTIWNDRTIQHHAQLAEQTSVNNPAYMQ
                     ALAGIQTTLHASLFKAQAFFETQLSAQASMLGLNDVFWLSAVIFVVIIPLIWITKPSK
                     DGAASAAGAGGH"
     gene            2023..3531
                     /locus_tag="VKJ77_02165"
     CDS             2023..3531
                     /locus_tag="VKJ77_02165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC44110.1"
                     /translation="MKAQITRFGSGIRAIKAGLSAILLAVLPACANYAGIHSDQQTAR
                     PQQFETTQSLPSESGHWPAADWADQFGDAQLKTLLEETLKGSPTIAQARARIAGAQAY
                     AETAKASTLPRVDADYSLMRQQLSGTADVPPPYAGSWQTQNSGLLSASYDLDLWGKNR
                     EALKAAVSQLQASAADEEVVKLTLTTTVARTYNQLARLYVLRDIAQQEVERREQIDRI
                     AAGRIAAGLDTQVERKTAQANLATARSARAALDSSILTTRYQLAALMGEGPDRGLAIA
                     RPALGVGDEVRLPDNLPADLVSRRPDIVAARWRVDAMTHEVKEAKAEFYPDINLSAAI
                     GLDSFGFGRFLTAASRTVNAGPAIHLPIFDAGALRAQLKGRYADFDDAVATYNQTLIT
                     ALSSVATQLAQIRSSDVQLDDAQAAQQAARQADDLAITQYKGGLTNQLTVLNADMNTL
                     QADQAVANLLMNRRDQQIALASALGGGYVDTSSESIRSVDLPAPAHPVVAAR"
     gene            3566..>4348
                     /locus_tag="VKJ77_02170"
     CDS             3566..>4348
                     /locus_tag="VKJ77_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HMC44111.1"
                     /translation="MSDAITTDRTSADSAPSNSNRAHDGPTGPSPNATPPAASGKRKL
                     WLALLGIGVVVAGAAYGTYYFTYGQYHESTDDAYVNGNLVELTPQVTGTVNAVNSDDT
                     QIVKAGDPVVTLDPADSKIALLNAEAALGQAVRQVSTLYVNNSYFAANVAQRESDLAR
                     ALDDLKRRLAVANTGAVSAEDVSHARDAVASAQASLDAAREQAQSNHALTDRTSLEQH
                     PNVQAAAAKLRDAYLNYARNTLPAPVTGYVAQRSVQVGERVAP"
BASE COUNT          804 a         1443 c         1342 g          759 t
ORIGIN      
        1 tttctgcgcc gagtttttta gagcaccggc ccgacctgct gcccatgatg caatcagggt
       61 ctcgcaatca aagaacctag atgaagacct cgcaatgatg tcatgacggt ttgcgagcga
      121 gtcagcgtat cgcgtttcgt ctaatcgctg tcaatcgagc ttcgaaaagg acgcaacttg
      181 aacccaccaa aaaacgcgag cgcgccggcg ccattgactg gctggcagtt cgcactgggc
      241 acgttcgctg tggccctcgc caccttcatg aatgtgctgg actcgtcgat cgccaatgtc
      301 gcgatcccga cgctgtcagg tgacctgggc gtgtcggtcg acgaaggcac gtgggtcatc
      361 acgctgttcg ccgccgccaa cgcggtggcc attccgctga ccggctggct gactcagcgg
      421 gtgggacagg tgaagctttt cgtgaccgca atcctgctgt tcgtggtcac gtccgcggtg
      481 tgcggcctcg cgccgaattt gctcttgctg ctcgtggccc gcgtcgtgca gggcgccgtg
      541 gcagggccgc tggtgccgtt gtcgcaatca ctcttgctct cctcgtttcc gcgggaaaaa
      601 agctcgagcg cgctgtcgtt gtgggcgatg accgcaacgg tcgggccgat cgccggcccg
      661 gccctgggcg gctggatcac cgacaactac aactggccgt ggatcttcta catcaatgtg
      721 cccgtcgggc tcttcgccgc cgcggtgatc tgggcgctct atcgcaagcg cgaaacgccg
      781 tcgcgcaagc tgccagtcga caagctgggg ctcctctcgc tgatcgtctg ggtgggcgcg
      841 ctgcaggtca tgctcgacaa gggcaaggat ctcgactggt tcaattcgcc ggtgatctgg
      901 gcgctcacga tcgtcgcgct gatcgcgttc ctgttcttct tgatatggga gctgaccgag
      961 gccaagccga tcgtcgacct gcgcctgttc aagggacgca acttcctggg cggcaccatc
     1021 gcgatatcga tcgcatacgc ggtcttcttc gccaacctcg tgattctgcc gacgtggatt
     1081 caggagtccc tgggctaccg ggctgtcgat gcgggcctcg tgacagcccc gctcggcatc
     1141 ttcgccgtga tccttgcgcc ggtgatgggc aagatcatgc cgaaatcgga cgtgcgggtg
     1201 ctggcgacgc ttgccttcct cggctttgcg ggcgtgttca tgatgcgctc gtggtacacg
     1261 acggacatcg acgcctacac actcgttctg cctacgctgc tgcagggcat cccgatggcg
     1321 ctgttcttca cgccgctcac ggcgatcatc ctgtcgggct tgccgccaga gaagatcccg
     1381 gcggccgcgg gtctgtcgaa cttcgcgcgg atcttcgccg gcgcggcggg cacgtcgctc
     1441 atgagtacca tctggaacga ccggacgatc cagcaccatg cgcaactcgc cgaacagacc
     1501 agcgtaaaca atccggccta tatgcaggcg ctcgccggta ttcagacgac gctgcacgcg
     1561 agtctcttca aagcccaggc ctttttcgaa acacaattaa gcgcgcaggc gtcgatgctc
     1621 ggcctgaacg atgtgttctg gctgtcggcg gtgatctttg tcgtgatcat tccgctcatc
     1681 tggatcacca agcccagcaa ggacggcgca gcgagtgcag cgggcgcggg cggtcactga
     1741 ccaacacgcc gctcaaacca gaagaaattg cgccatcagg gtatcaaacc cattcttgca
     1801 aagcgcggcg ccgtgcacgg cagtagcttc agaaaatatc gatgggtagt cgaacttact
     1861 catgcctgat ccatgaggcc ctcctgagtt cgccgcttgc ctcatctgct ggagcacacg
     1921 ccagcgatct attcagccct attgaaactg cctctaggtt cattgaagac tgagcaccac
     1981 gccgcccccc tctttttaac tattaatctg acaggtcaaa agatgaaagc gcagattacg
     2041 agattcggca gcggtatccg tgcgatcaaa gcggggcttt cggcgatcct gttggcggtg
     2101 ctcccggcat gcgccaacta tgcgggcatt cacagcgacc agcagacggc ccggccacaa
     2161 cagttcgaga cgacgcaaag cctgccgtcc gaaagcggtc actggccggc ggccgactgg
     2221 gccgaccagt tcggcgacgc gcaactgaaa accttgctcg aggaaacgct caagggcagt
     2281 cccacgatcg cgcaggcgcg cgcgcgcatc gccggagcac aagcctatgc ggaaaccgcg
     2341 aaggccagca cgttgccgcg cgtcgacgcc gattactcgc tgatgcgcca gcaactcagc
     2401 ggcacggcgg acgtgccgcc gccctacgcg ggcagttggc aaacccagaa cagcggactg
     2461 ttgagcgctt catacgatct ggatctgtgg ggcaagaatc gcgaagcact caaggcggcg
     2521 gtctcgcagt tgcaggcaag cgcggccgac gaggaagtcg tcaagctcac gctcacgacc
     2581 accgtcgccc gcacctataa ccagcttgcg cggctttacg tgctgcgcga tatcgcccag
     2641 caggaggtcg agcgccgcga acagatcgac cgcatcgcgg ccggccgcat tgcggccggg
     2701 ctcgataccc aggtcgagcg caagacggcc caggcgaatc tcgcgactgc ccgctctgcg
     2761 cgcgccgcgc tcgacagcag catcctgacg acccgctacc agttggccgc gctcatgggc
     2821 gaaggcccgg accgcgggct cgcgatcgcg cggcctgcgc ttggcgtcgg cgacgaggtg
     2881 cgcctgccgg acaaccttcc cgctgacctc gtgagccgcc gtccggacat cgtcgcggcc
     2941 cgctggcgcg tcgatgcaat gacgcatgaa gtgaaggaag caaaggccga gttctacccg
     3001 gacatcaatc tcagcgccgc gatcgggctg gactcgtttg gcttcggtcg cttcctgacg
     3061 gcggcaagcc gcacggtcaa cgcgggtccg gcgatccatc tgccgatttt cgacgcgggt
     3121 gcgctgcgtg cgcaattgaa gggccgttac gccgatttcg acgacgccgt cgcgacttac
     3181 aaccagacgc tgatcaccgc cttgagcagc gtggcgacgc aactcgcgca gatccgttcg
     3241 agcgacgtgc agcttgacga tgcgcaagcg gcgcaacaag ccgcgcgcca ggccgacgat
     3301 ctggcgatca cgcagtacaa gggcggcctg acgaatcagc taaccgtgct caacgcggat
     3361 atgaacacgc tgcaggcaga tcaggccgtc gctaacctgc tgatgaaccg gcgcgaccag
     3421 cagatcgcgc tcgcatcggc gctcggcggc ggttacgtcg atacgtcctc cgaatcaata
     3481 cgcagtgtgg atttgcccgc gcccgcccac cccgtcgtcg ccgcgcgttg aaccggcgcg
     3541 ttcgcaaact ttctggtgaa tcgacatgag tgatgccatc acgaccgacc gcacgagcgc
     3601 ggactcggca ccatcgaaca gcaaccgtgc acacgatggc cccaccgggc cctcgccgaa
     3661 cgcgacgccg cccgccgcct caggcaagcg caagctgtgg ctcgcgctgc tgggcatcgg
     3721 cgtcgtggtc gcgggtgcgg cgtatggcac gtactacttc acgtatgggc aatatcacga
     3781 gtcgaccgac gacgcgtacg tcaacggcaa cctcgtggag ctcacgccgc aagtgaccgg
     3841 cacggtcaac gcggtcaact cggacgacac gcagatcgtg aaagcgggcg acccggtcgt
     3901 cacgctggac ccggccgatt cgaagatcgc gctcctgaac gccgaggcgg ccctcggcca
     3961 ggccgtgcgc caggtgagca cgctctacgt gaacaacagc tacttcgcgg ccaacgtcgc
     4021 gcagcgcgaa tcggacctgg cgcgcgcgct tgacgacttg aagcgccgtc tcgcggtggc
     4081 gaacaccggc gcggtgtcgg cggaagacgt ctcgcacgcc cgcgacgctg tcgcctccgc
     4141 tcaggcatcg ctcgacgccg ctcgcgagca ggcgcaatcg aaccatgcgc tgaccgaccg
     4201 cacgtcgctc gaacagcatc cgaacgtgca agccgccgcc gcaaagctcc gcgacgccta
     4261 cctcaactac gcacgcaaca cgctgccggc gccggtgacc ggctacgtcg cacagcgctc
     4321 ggtgcaagtt ggcgagcgcg tcgcgccg
//
LOCUS       DATGBK010000151         3140 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_187075, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000151 DATGBK010000000
VERSION     DATGBK010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3140
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187075"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..608
                     /locus_tag="VKJ77_02175"
     CDS             <1..608
                     /locus_tag="VKJ77_02175"
                     /EC_number="3.5.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490711.1"
                     /note="catalyzes the formation of S-ureidoglycolate and
                     urea from allantoate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="allantoicase"
                     /protein_id="HMC44112.1"
                     /translation="LNGNAHHFRAIDAAAGVIYTHVRLNIYPDGGVARLRVFGRPRRE
                     LAPGTEFNLASAMIGARIVAANNQHYGLASNLLLPTRAANMGEGWETRRRREPGCDWC
                     IVELAVPGEISKIDVDTAHFKGNFADRCSLQGAFVTAGTDESLITQSMFWPVLLDEHK
                     LEMDRVHSFTPERISPVTHVRFNILPDGGVSRLRLIGHALG"
     gene            complement(658..1569)
                     /locus_tag="VKJ77_02180"
     CDS             complement(658..1569)
                     /locus_tag="VKJ77_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013959478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44113.1"
                     /translation="MLTVKQIETFYWVAKLGTVQRAADKLHITQSAATKRLQDVEAKS
                     AARLFEGSGKKARLSAKGHEMLALCEGLLESIGRLEAYQEADRHMARVLHIGLTELVA
                     LTWFPAFLQQMRDMFPNLILQPHVDMSGPLQEQVIDGRLDLAILPEPELPASLTRVTL
                     GSARFAWFCRPGEFDSKRTVPLRELGTAPVIEQTPVSIITILSSRAFESAGVNPERIC
                     GGNNAVVVGGLVAAGVGVSLLPVDLFRQQIENRLMQIVSTEPPAPLVRYDAIFLKQSH
                     SALGYMVADVARRCCNFSPGGQQPTAR"
     gene            complement(1572..2519)
                     /locus_tag="VKJ77_02185"
     CDS             complement(1572..2519)
                     /locus_tag="VKJ77_02185"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44114.1"
                     /translation="MAHQITFLQLEALVAIADMGSFEAAGRKLGSVQSGVSRHVRELE
                     GQFPKPLFDRGSRSARLTVDGLEVLSQARTILQQRDALLSQYASEKILHRSLRLGVTE
                     LAALTWLPGFIEALRSTYPLVNVELEVGGVAADLYEKLRLAQLDLAIVPDTPRWADML
                     RFPLANVRNGWFCSPTFSLKRRRLTVSELGQFTLLSQAGDSAAGHVMSKWLERHGVQP
                     RSILTCNNFAALGGMASAGLGVACLPNAISDELVTLGMLREVHVGPVMPPVRYVAVAR
                     QDALTPFHRKVISLARATCNYVTRYQDAAAREALVNEAK"
     gene            2689..>3140
                     /locus_tag="VKJ77_02190"
     CDS             2689..>3140
                     /locus_tag="VKJ77_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013959476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44115.1"
                     /translation="MKSSNKLTAALLGLTLALLAGTARADQLADIKARGTLVCGVLAN
                     FEPFGFQDPSSREIVGYDVDYCKGVAKALGVKPVLQVVSMEARIPELLQGRVDVLAAV
                     LGYSPARAEQLAFTHQYYVAKQVIAVKTSGPFKARDDLDGKRVSTIKGS"
BASE COUNT          631 a          965 c          932 g          612 t
ORIGIN      
        1 cgctgaacgg caacgcgcat cactttcgcg cgatcgacgc ggccgcgggc gtgatctaca
       61 cgcacgtacg actgaatatt tacccagacg ggggtgtcgc gcgattgcgc gtgttcggcc
      121 ggccgcgccg cgaacttgcg ccgggcaccg aattcaatct ggcgtcagcg atgattggcg
      181 cgcggatcgt cgcggcgaac aaccagcatt acgggttagc gtcaaatctg cttctgccca
      241 cgcgtgcggc aaacatgggc gaaggctggg aaacccgccg acgtcgcgaa ccgggctgtg
      301 actggtgcat cgtcgaactc gcggtgcccg gcgaaatcag caagatcgat gtcgacaccg
      361 cgcatttcaa aggcaatttc gcggaccgtt gctcgctgca aggcgcgttc gtcacggcag
      421 ggaccgacga atcgctcatt acccaatcga tgttctggcc cgtgttgctc gacgagcata
      481 agctggaaat ggaccgcgtg cattcgttca cgcccgagcg gatctcgccg gtgacgcatg
      541 tgcgcttcaa tattctgccc gacggtgggg tgtcgcgact tcgtctgatc gggcacgcat
      601 tgggttgatc cacaccgcct acgtgctatt tcgaaagata tcgcgtcgct ttagcgctta
      661 gcgcgctgtc ggttgctgac cacctggact gaagttgcag caacgccgtg cgacatcggc
      721 aaccatgtac ccaagcgcgg aatgtgactg cttcagaaaa atagcatcgt agcgaaccag
      781 cggcgccggc ggttcggtgc tcacgatttg catcagccgg ttttcaattt gctgcctgaa
      841 aagatcgacc ggcagcaaac tcacgccaac tccagctgcc acgaggccgc ccactacgac
      901 cgcattgttg ccgccgcaaa tacgctcggg attgacaccc gcgctctcga aggcccttga
      961 actcaggatc gtaatgatgg atacgggagt ctgctcgatg acaggagcag tgcccagttc
     1021 acgcagcggc accgtgcgct tgctgtcgaa ctcacctggg cggcaaaacc aggcgaagcg
     1081 tgcactcccg agcgtcactc gcgtgagcga tgcgggcagc tctggctcgg gcaggatcgc
     1141 gaggtcgagg cggccgtcga tcacctgctc ttgcagcggc ccggacatgt cgacgtgtgg
     1201 ttgcaggatg agattcggaa acatgtcgcg catctgctgc aggaacgctg gaaaccaggt
     1261 caacgctacc agctccgtca ggccgatatg cagcacgcgg gccatatgcc ggtccgcttc
     1321 ctggtacgcc tctagccgtc caatgctctc cagcaagccc tcgcacagtg cgagcatctc
     1381 gtgccctttc gcggacaacc ttgctttctt gccgctccct tcgaacaaac gtgcagcgga
     1441 cttcgcttcg acatcctgca ggcgcttggt tgcggcggac tgcgtgatat ggagcttatc
     1501 ggctgcacgt tgaacggtac cgagtttcgc tacccagtag aacgtctcga tctgcttgac
     1561 ggtaagcatg gctatttggc ctcgttgacg agcgcttcgc gggcggcggc gtcctgatag
     1621 cgtgtcacat agttgcacgt cgcgcgtgcg agcgaaatca ctttgcggtg gaacggtgtc
     1681 aacgcgtctt gccgcgcgac ggcgacataa cgcaccggcg gcatcaccgg ccccacatga
     1741 acttcgcgca acatacccag cgtcacaagt tcgtctgaaa tggcgttcgg cagacaggcg
     1801 acacccagcc cggcactcgc catgccacca agcgccgcga agttgttgca ggtcaggatg
     1861 ctgcgcggct gcacgccgtg gcgctcgagc catttgctca tgacatgtcc tgccgccgag
     1921 tcgccagcct gggacagcaa tgtgaactgg ccaagctctg atacggtgag cctgcgccgc
     1981 ttcaggctga acgtgggact gcagaaccag ccgttacgca cgttggcgag cggaaatctc
     2041 aacatgtccg cccagcgagg cgtgtcgggc acgatggcca gatccaactg cgccagtctg
     2101 agcttttcgt aaagatccgc agcgacaccg cccacttcca gttcgacgtt caccagcgga
     2161 taagtagagc gcagtgcctc gatgaagcca ggcaaccagg tgagcgcggc gagctcagtc
     2221 acgcccagcc tcaacgaccg atgcaatatt ttctcgctcg catactgact caacagggcg
     2281 tcgcgttgct gaagaatcgt gcgcgcttgc gagagtacct cgaggccgtc gacagtcagc
     2341 cgtgccgatc gcgaaccgcg gtcgaatagc ggcttcggaa attgcccctc cagttcgcga
     2401 acgtggcgcg acacgccgga ctgaacgctg cccagcttgc gcccggccgc ttcgaacgaa
     2461 cccatgtccg cgattgcaac cagtgcttcg agttgcagga acgtgatctg gtgcgccaca
     2521 cagccccctc ggatcaatct agttttggaa tggataatta tgcgcaaata tctctttatt
     2581 tgggattttt ttccaccaag aatacgacct ccaagtcccc cgaaatgcag atcgagccca
     2641 tcagcagctc gaggttgcgt tttgaagcac ccgtctacgg agaaacgcat gaaatcgtct
     2701 aacaaactaa ccgcagcatt gcttgggttg accctggccc tgctggcggg tactgcacgg
     2761 gccgaccaac tcgcggacat caaggcgcgc ggaacgctcg tgtgcggggt attggccaac
     2821 ttcgagccat tcggcttcca ggatccgtct tcgcgagaaa tcgtcggtta cgacgtcgac
     2881 tactgcaagg gcgttgcgaa ggccctgggc gtcaagcccg tgttgcaggt ggtgtcgatg
     2941 gaagcacgca ttcctgaact gctgcaaggc cgtgtcgatg tgctcgccgc ggtgctcggc
     3001 tactctccgg cgcgggctga gcaactcgca ttcacgcatc agtactatgt cgccaagcag
     3061 gtcattgcag tgaagaccag cggcccgttc aaggcgcggg acgatctcga cggcaagcgt
     3121 gtcagtacga tcaaaggctc
//
LOCUS       DATGBK010000152         2169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_71432, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000152 DATGBK010000000
VERSION     DATGBK010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71432"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..1453
                     /locus_tag="VKJ77_02195"
     CDS             149..1453
                     /locus_tag="VKJ77_02195"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HMC44116.1"
                     /translation="MTVSALPAVRRVAILGSNRIPFARSNTAYATASNQDMLTFTLQG
                     VIDRYDLHGLRLGEVAAGAVVKHSRDFNLTREALLNTTLARETPAYDVSQACGTGLET
                     AILVANKIALGQIDAGIAGGVDTTSDAPIGVNERMRKILLEANRGKSTAQRMSALAKL
                     RPGMLIKPTLPRNSEPRTGLSMGEHCELMAKRWKISREAQDELALDSHRKLAAAYERG
                     FFNDLMTPYKGLSRDNILRPDLTPERLAALKPVFDRDAGTLTAGNSTPLTDGASAVLL
                     ASEEWAAERNLPVLAYLTLSATAAVDFFDKKEGLLMAPAYAVPRLLERAGLKLADFDF
                     YEIHEAFAAQVLCTLAAWEDDEYCRTQLGLDRPLGSIESRRMNLNGGSLATGHPFAAT
                     GGRIVGTLAKMLAQAPGDTRTRRGLISICAAGGQGVVAILER"
     gene            1655..>2169
                     /locus_tag="VKJ77_02200"
     CDS             1655..>2169
                     /locus_tag="VKJ77_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1571 domain-containing protein"
                     /protein_id="HMC44117.1"
                     /translation="MHRGRQRCQNRKLIRASGRVRRLFAAIALAVIAMPAGAQEAAST
                     ATASLPTSAATSAAGPALSAGATTTPPKTPAAQVGKLPLDAQVRWLSHAALSGMLASM
                     SDQALVALFKSLDPLALPRYLKNGPIGYPSYEFTMVRRERIHGMWPGQADHMLVRVTR
                     NPLRVYAKWLP"
BASE COUNT          424 a          708 c          679 g          358 t
ORIGIN      
        1 tgggaattgc catgattcgg gcccgtgcca tgggcgaacg ctgcgattta gccgccgctt
       61 tagagaatat aatacggcat cctaatctac tcacaccgcc tgaaaccgat tttgacgcgc
      121 ccaccgtatc cctcgacgag acctcatcat gactgtgagc gcccttcccg ccgtacgtcg
      181 cgtggcgatc ctcggcagca accggattcc gttcgcccgc tccaacacgg cgtacgcgac
      241 ggcatcgaat caggacatgc tgacgttcac gctgcaaggc gtgatcgacc gatacgacct
      301 gcacggtctg cgactcggcg aagtcgcggc gggcgcagtg gtcaagcatt cacgcgactt
      361 caatctcacg cgcgaggcgt tgctcaacac caccctcgcc cgggaaacac ccgcctacga
      421 cgtgagccag gcgtgcggaa cgggccttga aaccgcgatc ctggtcgcga acaagatcgc
      481 gctcggacag atcgatgcgg gcattgcggg gggcgtggat acgacctcgg acgcgcctat
      541 tggcgtgaac gagcggatgc gcaagatcct gctcgaagcg aaccgcggca agtccacggc
      601 acagcgcatg agcgcgctgg caaagctgcg gcccggcatg ttgatcaaac ccacgctgcc
      661 gcggaacagc gaaccccgta ccgggctttc gatgggcgaa cattgcgagt tgatggccaa
      721 gcgctggaag atctcgcgcg aggcgcagga cgagcttgcg ctcgacagtc atcgaaagct
      781 ggcggcagcg tacgagcgcg gttttttcaa cgacctgatg acaccgtaca aaggtctttc
      841 acgcgacaac atcctgcggc cggatctcac gcccgagcgg ctcgctgcgc tgaaacccgt
      901 cttcgaccgc gacgccggca cgctcacggc cggcaattcc acgccgctca ccgatggcgc
      961 gtcggcggtg ttgctggcgt ccgaagaatg ggcggccgag cgcaacctgc ccgtgctcgc
     1021 atatctcacg ctctcggcaa ccgcagccgt cgatttcttc gacaagaaag aaggcctcct
     1081 gatggcgccc gcttacgccg tgccgcgatt gctcgaacgc gcgggactca agctcgctga
     1141 tttcgatttc tacgagatcc atgaggcatt cgcggcgcag gtgctgtgca cgctcgcggc
     1201 gtgggaagat gatgaatact gccgcacgca actcggcctg gaccgcccgc tcggctcgat
     1261 cgagagccgc cgcatgaacc tcaatggcgg gtcgctggca accggtcacc cgttcgcggc
     1321 gacgggcgga cggatcgtcg ggacgctcgc caagatgctg gctcaggcgc ccggcgacac
     1381 acgaacccgc cgcggcctca tctccatctg cgcggcgggt ggacaagggg tggttgccat
     1441 tctggagcgc tgaggcgggc gggccagccg ctcaggtcgt ggtcaccagc ggccgcctaa
     1501 gataaaacgc gatgacccgg aatttccggt ctctcggaag cgttctaaaa caaggaaaag
     1561 acggggaaag gttttcgccg tgaactgcgc gacgtatagg tagccaaagt aaaaacgcag
     1621 cgaaagcaaa aatgaacgga ccacggagaa cttcatgcat cgaggacgac agcgctgcca
     1681 gaatcgtaag ctgatccgcg caagcggtcg ggttcggcgc ctgttcgccg cgattgccct
     1741 cgcagtcatc gccatgcccg cgggcgcgca ggaggcggcc agcacggcca cggcctcatt
     1801 gccgacgtcc gctgccacct ccgcagccgg tccggcgctc tcggccggcg caacgactac
     1861 accgccgaag acgcccgcgg cgcaggtcgg caaactcccg ctcgatgccc aggtccgctg
     1921 gctgagtcac gccgcactga gcggcatgct cgccagcatg agcgaccagg cgcttgttgc
     1981 gctgttcaaa tcgcttgatc cgcttgcgct gccgcgctat ctgaagaacg gcccgattgg
     2041 ttatccgtcg tatgagttca ccatggtgcg gcgtgagcgt attcacggca tgtggccggg
     2101 tcaggccgac cacatgctgg tgcgcgtgac gcgcaacccg ctgcgggtct acgcaaaatg
     2161 gctgcccga
//
LOCUS       DATGBK010000153         5737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_302546, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000153 DATGBK010000000
VERSION     DATGBK010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5737
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302546"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..182
                     /locus_tag="VKJ77_02205"
     CDS             <1..182
                     /locus_tag="VKJ77_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HMC44118.1"
                     /translation="DWELIGVPHRLVIGDRGLKEGKIEYQARRDAEATLLPVDDAANV
                     VIEKVRAALARGVTQ"
     gene            184..795
                     /locus_tag="VKJ77_02210"
     CDS             184..795
                     /locus_tag="VKJ77_02210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012363042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HMC44119.1"
                     /translation="MQYNFLSATVLLILITDPLGNIPIFINALRGVAKERRRVVILRE
                     VAIAFGILLVFMLVGDRFLRAMSLTDLSLRLGGGIVLFLIALRMIFPHPDGPMGGDSR
                     GGEPLIVPLAIPALAGPSALATVMLLTSQAPGQMWEWIGALTVTMMVCAVVLVLAEKI
                     QHWLGERAVTAFERLMGLVLVAISVEMILTGIRTFVHQLAVNG"
     gene            complement(951..1502)
                     /locus_tag="VKJ77_02215"
     CDS             complement(951..1502)
                     /locus_tag="VKJ77_02215"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="HMC44120.1"
                     /translation="MNREEALHIFSHSEEIVSAQDVTASIESMAKAIGASTGEEFPLV
                     LSVMGGAAVFTGMLLPHLDFPLEFDYIHLTRYRNTTKGGDKMEWRVAPAEAVKDRVVL
                     VLDDILDEGETMAAIRDRIMAMGAKKFLSAVLCEKLINKSKPLRPDFCGFEVPDRYVF
                     GCGMDAKGYWRNLPTIRALTEGA"
     gene            complement(1631..2998)
                     /gene="ffh"
                     /locus_tag="VKJ77_02220"
     CDS             complement(1631..2998)
                     /gene="ffh"
                     /locus_tag="VKJ77_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HMC44121.1"
                     /translation="MLDTLTTRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVA
                     LPVVREFIAKVKEKALGEEVLSSLSPGQALVGVVQRELTAIIGGDYEGKAVELNLAVT
                     PPAIILMAGLQGAGKTTTSGKLAKLLREKHKKKVLTVSVDVYRPAAIQQLKTVTEQVG
                     ADFFPSEPDQKPADIARAAVDWAKRHFHDVLIVDTAGRLGIDEAMMKEISELHAILKP
                     AETLFVVDAMLGQDAVNTAKAFSDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKF
                     VGVAEKLDGLEVFHPDRMANRILGMGDILALVEEAQKGVDGAAAQKLADKVKKGGDFD
                     LNDFRAQLAQMKNMGGLSSLMDKLPAQFQQAAAGANMGVAEKQMRRMEGIINSMTLLE
                     RAKPDLIKAQRKRRIAAGAGVQVQEVNRMLAQYDQMRGMMKKLKGGNLQKMMRGMKGM
                     MPGMR"
     gene            3138..4097
                     /gene="ccsA"
                     /locus_tag="VKJ77_02225"
     CDS             3138..4097
                     /gene="ccsA"
                     /locus_tag="VKJ77_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HMC44122.1"
                     /translation="MDIVLYALTALLYGGLAVAGWRAHRNTAVEPALAGMPAGGRLAG
                     GMTTGMNSGMADSMQSGRTSKASGMSTIGRVLLGVALFVHGVLLHTTIFPQNSMVFGF
                     AFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACMASVMPLIFGGVRVLPYAAAPM
                     FKLHFLIANIAYGLFAIAALHAILMLMVEKRLQNMRGTATRHTSNSWVSSWLDTLPPL
                     LTLEKLLFRLISAGFVLLTLTLISGVAFNEQLVDKAFKLDHKTVFAILSWLMFGALLT
                     ARRVSGWRGRAALRWVLASFVALLLAYVGSRFVFEVLLHRAVV"
     gene            4154..4468
                     /locus_tag="VKJ77_02230"
     CDS             4154..4468
                     /locus_tag="VKJ77_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006491491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP0621 family protein"
                     /protein_id="HMC44123.1"
                     /translation="MRQLLLLIFVFFASQWLFKKLKRAQAAGGAQPGGQAGVGAGAAR
                     ASRGQAASGSVPQLPDALVRCAECGVHTPSSDAIVAAGHRFCCSDHAQRYAAHPTGRD
                     AR"
     gene            4465..5049
                     /gene="ampD"
                     /locus_tag="VKJ77_02235"
     CDS             4465..5049
                     /gene="ampD"
                     /locus_tag="VKJ77_02235"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HMC44124.1"
                     /translation="MSVSALIDADGWYSAAHRLPSPNFEARPGGIEPTLIVVHNISLP
                     PDDFGGSAIAEFFQNRLDHDAHPYYDHLRGVRVSSHFVIHRDGRIEQYVSCNERAWHA
                     GVSSFLGRERCNDFSVGIELEGSDRCAFEDAQYASLNDVVQALTRRYPIEALAGHSDI
                     APGRKTDPGPYFEWSRLQRDTQLPLQYFPYLGDV"
     gene            complement(5356..>5737)
                     /locus_tag="VKJ77_02240"
     CDS             complement(5356..>5737)
                     /locus_tag="VKJ77_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44125.1"
                     /translation="CANLQVFDGAERPRIEMRAARGGCLLLLCCCSLLLPTAHDDEIE
                     KDLFGKIAGASCAQSHDFSMGRYASNRRRQPLSLRLFASVLQTECRRFLRDKSVAYPV
                     FSSMAGQACGAGSMSGAPPGQHNI"
BASE COUNT         1020 a         1730 c         1728 g         1259 t
ORIGIN      
        1 cggattggga actgatcggc gtgccgcatc ggctggtgat cggtgaccgc gggctcaagg
       61 aaggcaagat cgagtatcaa gcacgacgcg atgccgaagc caccttgctg ccggtggatg
      121 acgcggcgaa cgtcgtgatc gagaaggtgc gcgctgcact agcacgtgga gtgacccagt
      181 aacgtgcagt acaacttcct ctcggcgacg gtgctgctta ttctgatcac cgatccgctc
      241 ggcaatatcc cgatcttcat caacgcgttg cgtggggtgg cgaaggaacg ccggcgggtc
      301 gtgatcttgc gggaagtcgc cattgctttc gggatcttgt tggtgttcat gctggtcggc
      361 gaccgctttc ttcgggcgat gagcctgacg gatttgtcgt tgcggctggg cggcgggatc
      421 gtgttgttcc tgatcgcgct gcgaatgatc tttccgcatc ccgacggtcc aatgggcggt
      481 gattcacgcg gtggcgaacc gctgatcgtg ccgctggcca ttcccgcgct ggccggtccg
      541 tcggcgctgg cgacggtgat gctgctgaca tcgcaggcac ccggtcagat gtgggaatgg
      601 atcggagcac tcacggtcac catgatggtc tgcgcggtcg tgctggtgct ggccgagaag
      661 atccagcatt ggctgggcga acgcgcggtc acggcgttcg aacggctgat gggattggtg
      721 ctcgtcgcga tatcggtgga aatgattctc accggaatac ggaccttcgt gcatcaactg
      781 gcagtgaacg gctgaccgaa gaccatcgag gggcgcggct ttcggggcgg tgaatgatca
      841 aaaaggccgt ttcaactcac gttgaaacgg cctttttgat cttgagagct gaacatcgcc
      901 aagcgaatca tgcggctact ggccgcacct caagcgctgg cgaaaacgag tcacgcgcct
      961 tccgtcagtg cccggatggt cggcaggttg cgccagtatc ccttcgcgtc cataccgcag
     1021 ccgaacacgt accggtccgg cacttcgaag ccgcaaaagt ccggccgcag gggtttcgat
     1081 ttattgatga gcttctcgca cagtacggcc gagaggaatt tcttcgcgcc catggccatg
     1141 atgcggtcgc ggatggcggc catggtttcg ccttcatcca ggatgtcgtc gagcaccagc
     1201 acgacgcgat ccttcaccgc ttccgccggc gccacgcgcc actccatctt gtcgccgccc
     1261 ttggtcgtgt tccgataccg cgtcaagtgg atatagtcga actcgagtgg gaaatcgaga
     1321 tgcggcagca acatgccggt gaacaccgct gcgccgccca tgacggacag cacgagtggg
     1381 aactcttcgc ccgtgctcgc gccgatggct ttcgccatgc tttcgatcga cgcggtcacg
     1441 tcttgagccg aaacgatttc ttcggagtga ctgaaaatgt ggagtgcttc ttcgcgattc
     1501 ataagggcag gcggcgaggg tgtagagcta aaaatagggg aaacgaggcg ctaagcgcca
     1561 tatgataaac ccgcgttcct cagcgaaacg cgggtcgtaa aaaatcaaac ctaagccgaa
     1621 ataaaaaact tcaacgcatg cccggcatca tgcccttcat gccgcgcatc attttctgca
     1681 gattgccgcc cttcagcttt ttcatcatgc cgcgcatctg gtcgtattga gcgagcatgc
     1741 ggttcacttc ctggacctgc acgcccgcgc ccgctgcaat acggcgcttg cgctgtgcct
     1801 tgatcagatc gggtttcgcg cgctccagca gcgtcatgga attgatgatg ccttccatcc
     1861 ggcgcatctg tttttccgcg acacccatgt tcgcgcccgc cgcagcttgc tggaattgtg
     1921 ccggcagctt gtccatgagc gacgacaaac cacccatgtt cttcatctgc gcaagttgcg
     1981 cgcggaagtc gttcaggtcg aaatcgccgc cctttttgac tttatcggcg agtttttgcg
     2041 cggctgcgcc atccacgcct ttctgcgctt cctcgaccag agcgagaatg tcgcccatgc
     2101 cgagaatccg gttcgccatc cggtccgggt ggaaaacttc cagcccgtcc agtttttcgg
     2161 cgacaccgac aaacttgatc ggcttgcccg tcacgtgacg tacggagagc gccgcgccgc
     2221 cgcgtgaatc gccgtccagc ttggtcagca ccacgccggt cagcggcagc gcgtcgctga
     2281 acgccttggc ggtgttcacg gcgtcctggc cgagcatggc gtcgaccacg aagagcgttt
     2341 ccgccggctt caggatcgcg tgaagctcgc tgatttcctt catcatcgct tcgtcgatac
     2401 cgagccggcc ggccgtatcg acaataagca cgtcatggaa atggcgtttc gcccaatcca
     2461 ccgccgcacg ggcgatatcc gccggcttct gatccggctc cgacgggaaa aagtccgcgc
     2521 cgacttgttc ggtcaccgtt ttcaactgct gaatagcggc cggacgatac acgtcgaccg
     2581 acaccgtcag cacttttttc ttgtgcttct cgcgcagcag cttggcgagc ttgcccgacg
     2641 tggtggtttt acccgcgcct tgcaggccgg ccatcaggat gattgccggc ggcgtgaccg
     2701 cgagattcag ctcgacggcc ttaccctcgt aatccccgcc gatgatcgcc gtcagctcgc
     2761 gctgcacgac gccgacgagt gcctgacccg gcgacaggct ggacagcact tcttcgccga
     2821 gcgctttttc cttcaccttc gcgataaatt cgcgcacaac cggcaacgcg acgtcggcct
     2881 cgagcagcgc caggcgtact tcgcgcagca tttcctgcgt gttagcctcg gtgagccggg
     2941 cttcgccgcg cagcgtcttg acgacgcgcg ccatccgtgt agtgagtgtg tcgagcatgg
     3001 gagcgtgtgg aaagtgcggc cgggtgccgg ataacaataa gtaacggggt aacggcgtcc
     3061 tggcggctct tgcttcaaga cgacctggca agagggggaa gacgtcgtgg cttcagggcc
     3121 tggtgtaaac ttcgaacatg gatattgtac tgtatgccct cactgcgctt ctctacggcg
     3181 gacttgccgt agccggctgg cgcgcgcatc gcaacacggc tgtcgagccg gcgctggcgg
     3241 gcatgccggc gggcggtcgt ctggccggcg gcatgactac cggaatgaac tccggaatgg
     3301 ccgactccat gcagagcggc cggacatcga aggcgtcggg catgagtacg atagggcgcg
     3361 tgttgctcgg cgtcgcgttg ttcgtgcatg gcgtcttgtt gcacaccacc atctttccgc
     3421 agaactcgat ggtgttcggc ttcgccttcg cgctctccgc catgttctgg ctgggtgcgg
     3481 gcatctactg gatagaaagc tttttcttcc cgctcgacgg tttgcggctg ctcgtgctgc
     3541 cacttgcgtg catggcctcg gtgatgccgc tgattttcgg cggcgtgcgc gtgctgccgt
     3601 atgccgccgc gcccatgttc aagttgcatt tcctgatcgc gaatattgcg tacgggctgt
     3661 tcgcgattgc cgcgcttcac gccatcctga tgctgatggt ggaaaagcgc ctgcagaaca
     3721 tgcgcgggac cgccacgcgg catacatcga atagctgggt gtcgagctgg ctcgatacct
     3781 tgccgccgtt gctcacgctt gaaaaattgt tgttccggct gatctcggcg ggcttcgtgc
     3841 tgctgacgct cacgctcata tcgggtgtcg cgttcaacga acaactcgtc gacaaggcgt
     3901 tcaaactcga tcacaaaacc gtgttcgcca ttttgtcgtg gctgatgttc ggcgcgctgc
     3961 tgaccgcccg tcgtgtgtcg ggctggcgcg gccgcgccgc gttgcgttgg gtgctcgctt
     4021 cgttcgtcgc gttactgctt gcttatgtgg gcagccgctt cgtgttcgaa gtgctgctgc
     4081 atcgcgcggt cgtttgacgc ggtcagccga atccccgggc ttttattgcc tctactattc
     4141 tattagtaag atcatgcgcc aacttctcct gctgatattt gtgttcttcg cgagccagtg
     4201 gctgttcaag aagctcaagc gcgcccaagc tgctggcggc gcgcaaccgg gcggccaagc
     4261 gggcgtcggt gcaggcgccg cccgcgcgtc tcgtggccag gcggcttccg gctccgtgcc
     4321 tcaactccct gatgcccttg tgcgctgcgc ggaatgcggc gtgcacacgc cgagcagcga
     4381 cgcgattgtc gcggccgggc atcgattctg ttgctccgat cacgcccagc gctacgccgc
     4441 tcatcccaca ggccgcgacg ctcgatgagc gtgtcagctt tgatcgatgc cgatggctgg
     4501 tactcggccg cgcatcggct gccgtctccg aacttcgaag cgcgtccggg tggtatcgag
     4561 ccaacgctca ttgttgttca caacatcagc ctgccgcccg atgacttcgg cggcagcgcc
     4621 atcgccgagt tcttccagaa ccgtctcgat cacgacgctc atccgtacta tgaccacttg
     4681 cgcggcgtgc gggtctcgtc gcatttcgtg attcatcgcg atggccgcat cgagcagtat
     4741 gtgtcgtgta acgagcgcgc atggcacgcg ggcgtgtcca gctttctcgg gcgtgagcga
     4801 tgcaacgact tttcggtggg tatcgaactg gaaggcagtg atcgatgtgc gttcgaggac
     4861 gcgcaatacg cgtcgctcaa tgacgtcgtc caggcgctca cccggcgcta tccgatcgaa
     4921 gcgctcgcgg gtcattcgga catcgcgccg ggtcgtaaaa ccgatccggg cccgtacttc
     4981 gaatggtcgc ggctgcagcg cgatacccaa ctcccgcttc agtactttcc ctatctcggc
     5041 gacgtttgat tcgctgctcg tccacgcctg atcgagtgcg ttgcagcgtg agtcactgag
     5101 ccgcggtgac gcgttacgtc ttgccaacgt cgctggcgga ccgctggcct tgcctcaccg
     5161 ctcaccaggg atctgaagag ctttcatctt gcattgcagc gcgtttgtgt gcattcgccg
     5221 catgcgagcg cgctttccct tatccgactt tggcatttca aaagtcaacc ctcagaaggc
     5281 tattcttcag caaataaaag tttttgagac tgtgcggaat gccactatac ttggtgctca
     5341 gagacgtaat tcgcactata tgttgtgttg tccaggcggc gccccgctca tagagccggc
     5401 gccgcatgct tgtccggcca tagaagaaaa caccggataa gcgactgatt tgtcgcgtaa
     5461 aaaacgccgg cattcagttt gaaggaccga ggcaaacagg cgtagcgaga gaggttgtct
     5521 tcgtcggttt gaagcgtatc ggcccataga aaaatcatgg gactgagcgc aagaagcacc
     5581 ggcaattttc ccgaataagt ctttttcaat ttcatcgtcg tgcgcggttg gcaaaagcag
     5641 tgaacagcaa caaagcagca acaagcagcc accacgcgcg gcacgcatct caatccgcgg
     5701 acgttccgca ccatcgaaca cctggagatt tgcacat
//
LOCUS       DATGBK010000154         2191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_302549, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000154 DATGBK010000000
VERSION     DATGBK010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302549"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..621
                     /locus_tag="VKJ77_02245"
     CDS             <1..621
                     /locus_tag="VKJ77_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC44126.1"
                     /translation="AELGRIDVVVSNAGYGLVGAAEELSDEQIRLQVDTNLIGSIQVI
                     RAVLPFLRAQGGGRILQVSSEGGQITYPDFSLYHATKWGIEGFVEAVATEVAPFGIEF
                     TIVEPGPAKTSFSGGIVKSTPMAIYDNTPAGDVRRAIESGSFALKGDPVKMVQAMIDS
                     VERTPAPLRLTLGSDAFDRVRAGLSKRLAELDAQEDIARSTKLTDA"
     gene            complement(623..1318)
                     /locus_tag="VKJ77_02250"
     CDS             complement(623..1318)
                     /locus_tag="VKJ77_02250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44127.1"
                     /translation="MPKPEISTFARQNQSSRRIKLAGAAFITLTALIAGASYLYNGSA
                     PNNLDNREAKPGTGPLAENGFVAAAQPGSINAPAGAKNTSFDAMRTVDAVRSAMVRGE
                     LNTARQQLAMLPPGGTQRADVRRITDELVQREHARDSALGLAQACEKAGDVPCVLRSA
                     GDALASDVSDTEARGMLLRAVTQSGANQATAVKVDQPVDASNVAHRKVSEKRRIRRER
                     QILANNNVVYGKH"
     gene            complement(1792..>2191)
                     /locus_tag="VKJ77_02255"
     CDS             complement(1792..>2191)
                     /locus_tag="VKJ77_02255"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44128.1"
                     /translation="IRNTLDAGKFLRAEHVAYSPTAGSHAAFEAEVADFFHRHDVHRK
                     VAVRLAHSLGLAQIIASSDLVACVPSRLAATMLTEPDIRTFALPFETTALPVSQLWHL
                     RFRNDEGHKWLRSVIYELFQETALPDFAKS"
BASE COUNT          420 a          612 c          694 g          465 t
ORIGIN      
        1 gcggagttgg ggcgtatcga cgtggtcgtc agcaacgccg gctacggact ggtcggcgca
       61 gcggaggagc tgagcgacga gcagatccgg ctgcaggtcg acaccaacct gatcggctcg
      121 atccaggtca tacgcgccgt attaccgttt ttgcgggcgc aaggcggcgg ccggattttg
      181 caagtgtcgt cagagggcgg acagatcacg tatccggact tcagcctgta tcacgcgacg
      241 aaatggggaa ttgaaggctt cgtcgaggcg gttgccacgg aagtcgcacc gttcggaatc
      301 gagtttacga tcgtggaacc gggtcccgca aaaacaagct tcagcggtgg catcgtcaaa
      361 tcgacgccca tggcaatcta cgacaacacc ccggccggcg atgtccggcg tgcaatagaa
      421 tccggttcgt tcgcgttgaa aggcgacccg gtcaagatgg tccaggcgat gatcgatagc
      481 gtcgagcgca cgcccgcgcc gctgcggctg accctgggca gcgacgcgtt cgacagggtt
      541 cgcgccgggc tgtcgaaacg gcttgccgag ctcgatgcac aggaagacat cgcccggtcg
      601 accaagctga ccgacgcgtg attcagtgtt tcccgtagac gacgttgttg ttcgccaata
      661 tctgccgttc gcgtcggatc ctgcgttttt cagatacttt ccgatgcgcc acattcgaag
      721 catcgaccgg ttggtcgacc ttcacagccg tggcctgatt tgcgcccgac tgcgtgacgg
      781 cacgtagaag cattccgcgc gcttcggtat cggatacgtc gctcgccaat gcgtcgcctg
      841 ccgatcgcaa gacgcacggc acgtcgccgg ccttctcgca ggcttgggcg aggcccaggg
      901 ctgaatctct tgcgtgttcg cgctggacca gttcgtcggt gattcgccga acatcagccc
      961 gttgagtccc gcctggagga agcatcgcga gttgctgccg agcggtgttc agttcgcctc
     1021 gcaccatggc cgaacgcacc gcatcgacgg ttctcatggc atcgaacgag gtgttttttg
     1081 cgccggccgg agcattgatg ctgcccggct gagcggcggc aacgaagccg ttttcagcga
     1141 gtggcccggt cccgggcttc gcttcgcggt tgtcgaggtt gttgggagcg gacccgttat
     1201 acaggtagga agcgcctgca atcagtgcag tcagggttat gaaggcggcc ccggcaagtt
     1261 tgatgcgccg gctcgactgg ttttgtcggg cgaaagtaga aatttccggt ttaggcacgc
     1321 tcggataggg cgaattgacc ggggttcgct tcgcatcaca gcggtgggga gatgcctctt
     1381 tctgcatggc ttcgggagag ggtgactcgg ctgcgctcgc ctctgcgggt tttgctccgc
     1441 atcgcggaca catagcgtca gccaatgcca gcacgttgcc gcatacgaga caatcactgg
     1501 tggtttcttg ggtacgcacg tttaagtcgg tcatcaaaag gcttggaaaa gcattatgca
     1561 ggtcacggtg ttttctttct gcgcggatgc agatcgatgc tgaagcgttc gctcaggatg
     1621 agcctgcttc cagcggtagg ggcgcggaac ggtccgtctg gactgatcgc ggctccctgc
     1681 caattttcgc tctaaagcgt tactttaacg cggcacgtcc gtgacgcaag attgtgcgac
     1741 tttatcgttg cccccaaatt ccgatagctg gtgcttgaac ggaagtcact cctaagactt
     1801 tgcgaaatct ggcagcgccg tctcctggaa caattcgtag atcaccgaac gcaaccattt
     1861 atgcccttcg tcgttgcgaa atctgaggtg ccagagttgc gatacaggaa gagcggttgt
     1921 ttcaaacggc agcgcaaagg ttcggatatc cggctccgtc agcatggtcg cagcgagacg
     1981 gctagggacg caggcgacaa ggtcgctgga cgcgattatt tgcgctaacc ccaacgagtg
     2041 cgcaaggcga acggccactt ttcgatgaac gtcatgacga tgaaaaaaat cggcgacttc
     2101 cgcttcgaac gccgcgtgac tgcctgctgt gggtgagtac gcaacgtgct cggctcgaag
     2161 gaatttcccg gcgtcgaggg tgttgcggat a
//
LOCUS       DATGBK010000155         3108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_48300, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000155 DATGBK010000000
VERSION     DATGBK010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48300"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VKJ77_02260"
     CDS             complement(<1..331)
                     /locus_tag="VKJ77_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC44129.1"
                     /translation="MALSISLTVNGKAVTATVEPHILLVQFLREELRLTGTHIGCDTA
                     QCGACTVHLDGRAIKSCNILAVQADGSSVTTIEGMAKDGELHPMQAAFKECHGLQCGF
                     CTPGMVMS"
     gene            complement(603..2000)
                     /locus_tag="VKJ77_02265"
     CDS             complement(603..2000)
                     /locus_tag="VKJ77_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HMC44130.1"
                     /translation="MSLFRKKSIEHMLAGAQRAGLKKTLGALDLTFLGVGAIIGTGIF
                     VLTGTGAVQAGPALMVSFIFAAIACALAALAYAEFASTIPVAGSIYTYSYATLGELAA
                     WVIGWDLMLEYGLATSAVSVGWSGYLQSLLSGFGIGLPTVLTAAPGAVPGHFTLLNLP
                     AFLVMMAITSLLSIGIKESARVNNVMVAIKVAVVLMVIGVGVFHVTPANWHPFMPNGW
                     NGVFGAAAVMFFAFIGFDSVSSAAEEVKNPKRDLPIGIISSLAVCAVLYVAVAAVVTG
                     IVPAAQFANISHPVSYALQVVGQKWVAGFIDLGAVLGMLTVILVMSYGQTRIIYAMSR
                     DGLLPARLSTVHPKFGTPFFTTWLVGLFFGLIGALVPLNVLAELINIGTLAAFSMVSI
                     AVLILRRTHPDLPRAFRCPGVPVVPVLAVAACLFLMLNLKAVTWIAFVAWLAIGLAIY
                     FGYSRRHSKLGRGVE"
     gene            complement(2362..>3108)
                     /locus_tag="VKJ77_02270"
     CDS             complement(2362..>3108)
                     /locus_tag="VKJ77_02270"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HMC44131.1"
                     /translation="VLSVHHWTDSLFSFTCTRDSAFRFENGQFTMVGLEVDGKPLLRA
                     YSLASANYEEHLEFLSIKVQDGPLTSRLQHLKVGDPVLIGKKPVGTLVADNLLPGKTL
                     WLLSTGTGLAPFMSIIKDPDVYDRFDKIVLTHTCRFVDELAYKDFITEHLPAHEHLGE
                     LIQEKLVYYPTVTREEFANRGRITDLIETKKLFADLDVAPFSVENDRVMLCGSPHMLR
                     DTRQLLDEMGFQEGSNNHPGHYVVEKAFVG"
BASE COUNT          711 a          940 c          894 g          563 t
ORIGIN      
        1 cgctcatcac catgccgggc gtacagaagc cgcactgcaa gccgtggcac tccttgaacg
       61 ctgcctgcat ggggtggagt tcgccgtcct tcgccattcc ttcgatggtc gtcaccgacg
      121 acccgtcggc ctgcacggcg aggatgttgc acgacttgat ggcgcggcca tccaggtgaa
      181 cggtgcacgc gccgcactgg gcggtgtcgc agccgatgtg cgtgcccgtg agacgcaact
      241 cctcacggag aaactggact agcaggatgt ggggttcgac ggtagcggtg acggctttgc
      301 cgttgaccgt cagactgatg ctgagcgcca tgcttctgtc tccttcgggg gataaacagc
      361 cgaagctcac tcaccgcttt tgtttcactg gccttgcgga cttcacgatc gtgagtgtct
      421 ggctgggttc gtgtttattt gttgtagcaa tgagtaaagc acaaaatgaa gaccgtcgct
      481 attgggctaa aggcggggtg ggggcgtcgc tatgcaggtg ttttatatcg cggaagacac
      541 tcgtaaaaac gccgcctcga tgggcggcgt aaggctaagc ggctatgttc aagcccggcg
      601 cgtcactcca ccccgcgccc cagtttcgaa tgccggcgtg agtaaccgaa atagatcgcc
      661 aacccaatag ccagccatgc cacgaatgcg atccacgtca cagccttcag gttcagcatc
      721 aggaacaggc aagccgcgac cgccagcacc ggcacgaccg gcacgcccgg gcagcggaac
      781 gcacgcggca gatcgggatg cgtgcgacgc aaaatcagca cggcaataga caccatcgaa
      841 aacgcggcca gcgtgccgat attgatcagt tcggccagca cgttgagcgg cacgagcgca
      901 ccaatcagcc cgaagaacag acccaccagc cacgtcgtga agaacggcgt gccgaatttc
      961 ggatgcaccg tcgacagacg cgcgggcaac aagccatcgc gggacatcgc gtagatgatg
     1021 cgggtctggc catagctcat caccagaatc acggtcagca tcccgagcac ggcgcccaga
     1081 tcgatgaaac ccgccaccca cttctgcccc acgacctgca gcgcgtacga caccggatgc
     1141 gagatattgg cgaactgcgc cgccgggaca atacccgtca ccacggccgc caccgccacg
     1201 taaagcacgg cgcacaccgc cagcgacgaa ataatgccga tcggcaaatc gcgtttcgga
     1261 ttcttcacct cttctgccgc cgacgacacc gagtcgaagc cgataaacgc aaagaacatc
     1321 acggccgccg cgccgaacac gccgttccag ccgtttggca tgaacggatg ccagttcgcc
     1381 ggcgtgacgt ggaacacacc aacgccaatc accatcagca cgaccgcgac cttgatcgcg
     1441 accatcacgt tgttcacgcg cgccgattcc ttgataccga tcgacagcag cgacgtgatc
     1501 gccatcatca cgagaaacgc tggcaagttt aacagcgtga aatgtccggg cacggcgccg
     1561 ggcgcggctg ttagcacggt gggcaaccca atgccgaagc ccgacagcag cgattgcaga
     1621 taacccgacc agccgaccga cacggcggag gtcgccagcc cgtattccag catcagatcc
     1681 cagccgatga cccacgcggc cagttcgccg agcgtggcat acgaatacgt atagatggac
     1741 ccggcgacag gaattgtcga tgcaaactcc gcatatgcga gcgccgcgag agcgcacgca
     1801 atggcagcga aaatgaacga caccatcagc gccggaccgg cttgtaccgc gccggtcccg
     1861 gtgagcacga aaatccccgt gccgataatc gcgccgacac ccagaaacgt cagatcgagc
     1921 gcccccagcg ttttcttgag tccggcgcgt tgcgcgccgg cgagcatgtg ctcgatgctt
     1981 ttcttgcgga acagggacat gaacgatgac tcctcaaacc tcgagcgcgg cgcgctaaat
     2041 cgatcggaaa acccgcgatt ctatcggatt gaagaggtaa atcgtcgcaa aacgttgcac
     2101 acaattgaat tttgacttct tgatgtcagc gtattttttc caaaaacgtt tgaaaattgt
     2161 gcatcggaac gaatttgaga tcagatcagc tttcgtaagc tgaatcggta gtaaaagccg
     2221 ctttttagga catcttgtcg caacgcggag ttgcatatcg cgattggttg atgaaccgtc
     2281 caaaagaaaa aaccgaagcg caggggcttc ggttttcgtt ttccagcacg ccggcaaggc
     2341 agcaacgctg cacggcagag ctcagccgac gaaggccttc tccacgacgt aatgccccgg
     2401 atggttgttg ctgccttcct ggaagcccat ttcatcgagg agctgacgcg tgtcgcgcag
     2461 catgtgcggg ctgccgcaaa gcatgacgcg atcgttttcc acggagaaag gcgccacgtc
     2521 cagatcggcg aacagcttct tcgtttcgat caggtccgtg atccggccgc gattggcaaa
     2581 ctcttcacgg gtaaccgtcg ggtaatacac cagcttttcc tggatcagct cgcccagatg
     2641 ctcgtgcgcc ggaaggtgct cggtgatgaa atccttgtac gcgagttcat cgacgaaacg
     2701 gcaggtgtgc gtgagcacga tcttgtcgaa acgatcgtag acgtccgggt ccttgatgat
     2761 cgacatgaac ggcgccaggc ccgtgcccgt cgacagcagc cagagcgtct tgccgggcag
     2821 gaggttatcg gcgaccagcg tacccactgg cttcttgccg atcagcaccg gatcgccgac
     2881 cttcaaatgc tgaagacgcg atgtcagggg accgtcctga accttgatgc tgagaaattc
     2941 gaggtgctct tcgtaattcg cactcgccag actataagcg cggagcagcg gcttgccatc
     3001 gacttccaga ccgaccatgg tgaactggcc attttcgaaa cggaacgcgg aatcgcgcgt
     3061 gcaagtgaag ctgaacagcg agtcggtcca gtgatggacg cttagaac
//
LOCUS       DATGBK010000156         2197 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_163907, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000156 DATGBK010000000
VERSION     DATGBK010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163907"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1145)
                     /gene="glmU"
                     /locus_tag="VKJ77_02275"
     CDS             complement(<1..1145)
                     /gene="glmU"
                     /locus_tag="VKJ77_02275"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011353430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HMC44132.1"
                     /translation="MNIVILAAGMGKRMRSALPKVLHPLAGRPLLAHVLDVARALKPT
                     RLVVVIGHGAEQVQKAVGAPDVQFAVQDQQLGTGHAVQQALPLLDLSVPTLILYGDVP
                     LTRVSTLQRLADAASGGRYGVLTVTLDDPTGYGRIVRDPTGAVQCIVEQKDANPGQLT
                     IAEINTGIVITPTAQLGEWLSSLKNDNKQGEFYLTDVVERALEAGIEVVTSQPDEEWE
                     TLGVNSKQQLAELERIHQGNVAEALLVAGVTLLDPARIDVRGTLTCGRDVSIDVNCIF
                     EGNVTLEDNVTVGPNCVIRNASIGTGTRIDAFTHIDGGTTGANVVLGPYARLRPGAVL
                     GDEAHVGNFVEVKNAVFGRGSKANHLSYIGDSDIGARVNIGAGTITC"
     gene            complement(1255..2193)
                     /gene="ttcA"
                     /locus_tag="VKJ77_02280"
     CDS             complement(1255..2193)
                     /gene="ttcA"
                     /locus_tag="VKJ77_02280"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HMC44133.1"
                     /translation="MVQELASVPTIREPLTRREQKQAYENNKLFKRLARQVGEAVTDY
                     NMIEDGDKVMVCLSGGKDSYAMLELLMRLRERAPINFDIVAVNLDQKQPGFPEHVLPE
                     YLSKLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGH
                     HRDDILQTLLLNMFYGGKLKGMPPKLQSDDGKNIVIRPLAYAKERDLEKFAQLREFPI
                     IPCNLCGSQPNLKRAEMKALIRDWEKRFPGRVENMFNALGHVVPSHLMDHGLFPFAGL
                     RATGVADPAGDIAFDEDPCSTESTSQTISIVQFDDI"
BASE COUNT          428 a          709 c          623 g          437 t
ORIGIN      
        1 ttacaggtga tcgtgcccgc gccgatattc actcgcgccc caatatccga gtcgccgata
       61 tagctcaagt ggttcgcctt tgacccacgc ccgaacaccg cgtttttcac ttcgacgaag
      121 ttgcccacgt gcgcttcgtc gccgagcacc gcgcccggcc gcaagcgcgc atacggcccg
      181 agcacgacgt tcgcgccggt cgtgccgcca tcaatgtgcg tgaacgcatc aatccgcgta
      241 cccgttccaa ttgacgcatt gcgaatcacg caattcgggc caacggtcac gttatcctcc
      301 agcgttacat tgccttcgaa gatgcaattc acgtcgatag acacatcgcg tccgcaggtc
      361 agcgtgccgc gcacatcaat gcgcgcgggg tccagcaacg tgacgcctgc aactaatagc
      421 gcctcggcaa cattgccttg atggatccgt tcgagttcgg cgagttgctg cttgctgttc
      481 acgccgagcg tttcccactc ttcgtccggt tgcgacgtca ccacttcaat gcccgcttcg
      541 agcgcacgct cgacgacatc ggtgagataa aactcgccct gcttgttgtc gtttttaagc
      601 gatgacagcc attcgcccag ctgcgcggtc ggcgtaatga caatgccggt attgatctcg
      661 gcaatggtca actggccggg attggcgtct ttctgctcaa caatgcactg cacggcgccc
      721 gtcggatcgc gcacgatgcg gccgtacccg gtcggatcgt ccagcgtgac cgtcaggacg
      781 ccgtagcggc cgccggaggc cgcgtcggcc aggcgttgca gcgtactgac gcgggtaagc
      841 ggcacatcgc cgtagagaat gagcgtaggc acggaaaggt cgagcagcgg tagcgcttgc
      901 tgaaccgcgt ggccggtgcc cagttgctga tcctgcacgg cgaactggac atcgggggcg
      961 ccgactgctt tctgaacctg ttcagcccca tgtccgatca cgacgacaag ccgcgtgggc
     1021 ttgagcgcgc gcgcaacgtc gagcacatgg gcgaggagcg gccggccggc caggggatga
     1081 aggactttcg gcaaggcgga acgcatgcgc ttgcccatgc ctgccgccaa aataacaatg
     1141 ttcatggcgt cagcttcgtt gaagtgtttg gagccgccaa tatagcacgc gcgggtgggc
     1201 ggcaaaaccc ggcgcgccct tgctgagcaa cgattctgca ggctcgtggc tgcgtcaaat
     1261 atcgtcgaac tgaacaatcg aaatggtctg cgaggttgac tccgtcgaac acgggtcttc
     1321 gtcgaacgcg atatccccgg ccgggtccgc cacacccgtc gcgcgcaatc cggcaaacgg
     1381 aaacagcccg tgatccatca aatgcgacgg caccacatgc cccagcgcgt tgaacatgtt
     1441 ctccacgcga cccggaaaac gcttttccca atcgcgaatc agcgccttca tttccgcgcg
     1501 cttcaggttc ggctggctgc cgcacaagtt gcacggaatg atcgggaact cgcgcaactg
     1561 ggcgaacttc tccagatccc gttccttcgc atacgccagc ggccggatca cgatgttctt
     1621 gccatcgtcg gattgaagct tggggggcat gcctttcagc ttgccgccgt agaacatatt
     1681 cagcagcagc gtctgcagga tgtcgtcgcg atgatgccca agcgcaattt tcgtcgcccc
     1741 aagctcaccg gccacgcgat acaaaatccc gcgccgcaat ctcgaacaca gtgaacacgt
     1801 cgtcttgcct tccggcacca gccgcttgac gatgctgtac gtatcctgat tctcgatatg
     1861 aaacggaata tccagcttgc tcaaatactc gggcagcaca tgctccggaa accccggctg
     1921 cttctggtcg agattcacgg ccacgatgtc aaagttgatc ggcgcgcgtt cgcgcagccg
     1981 catcaggagt tcgagcatcg cgtacgaatc cttgccgccg gacaggcaga ccatgacctt
     2041 gtcgccgtcc tcgatcatgt tgtaatccgt gacggcctcg cccacctggc gcgccagccg
     2101 cttgaacaac ttgttgttct cgtaggcctg cttctgctca cggcgcgtca acggctcgcg
     2161 tattgtcggg acggatgcca actcctgaac caccggc
//
LOCUS       DATGBK010000157         2832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_48311, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000157 DATGBK010000000
VERSION     DATGBK010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48311"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..587
                     /locus_tag="VKJ77_02285"
     CDS             <1..587
                     /locus_tag="VKJ77_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006412648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HMC44134.1"
                     /translation="FHTTFNIFRVGMKARSIPDATHGLHSIITVTKTGEDTSAAYKQQ
                     NIRSFDEGFTLEDDSILGLISEYEEDTTNHIQPIFPQLVIQQIHNTLVARQLLPKGPN
                     SFELIFHFFGYTDDTPEMRELRIKQANLVGPAGYISMEDTEATELVQRGTIRDAGATS
                     VIEMSRGNPDQQDTVITESLIRKFWVGYQKLMGY"
     gene            606..1079
                     /gene="andAd"
                     /locus_tag="VKJ77_02290"
     CDS             606..1079
                     /gene="andAd"
                     /locus_tag="VKJ77_02290"
                     /EC_number="1.14.12.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011494233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018618 - anthranilate 1,2-dioxygenase
                     (deaminating, decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019439 - aromatic compound catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate 1,2-dioxygenase small subunit
                     AndAd"
                     /protein_id="HMC44135.1"
                     /translation="MEAMKLWFELHMLQDQYINNLDNDRLEAWPTLFTEDCLYEIIPK
                     ENADMGLPIGIIYCDNQKMLRDRVVSLRNANIFEEHSYRHMTSGLCVVAEKDGVIETE
                     SNYVVIQTRTDGESNVYQAGKYYDKVVRTDAGLRYQSKRVIYDTSRVQTLLATPI"
     gene            1091..1414
                     /gene="andAb"
                     /locus_tag="VKJ77_02295"
     CDS             1091..1414
                     /gene="andAb"
                     /locus_tag="VKJ77_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004190354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019439 - aromatic compound catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate 1,2-dioxygenase ferredoxin subunit
                     AndAb"
                     /protein_id="HMC44136.1"
                     /translation="MNQLAQAWFPVGALDDFEEGEPVAVVAGNKPIAVFRLGEEIFAL
                     HDLCTHGHARLSEGFVENGCVECPLHQGLVDIRTGAPQCAPIVEAVRTYPVRINEGSV
                     EIHVE"
     gene            1404..2624
                     /gene="andAa"
                     /locus_tag="VKJ77_02300"
     CDS             1404..2624
                     /gene="andAa"
                     /locus_tag="VKJ77_02300"
                     /EC_number="1.18.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006411378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008860 - ferredoxin-NAD+ reductase
                     activity [Evidence IEA];
                     GO_process: GO:0019439 - aromatic compound catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate 1,2-dioxygenase system
                     ferredoxin--NAD(+) reductase"
                     /protein_id="HMC44137.1"
                     /translation="MSNEAYVIVGAGHAARRAAETLRLKAPESRTLMIGEEAELPYDR
                     PVLSKDALLGIEGEQRAFIRDAHWYAQQCIEMRLGVRVSAIDREQRCVVLSDGARIGY
                     ERLLIATGSRVRRFSGPVEEGVALHYVRTIADARALREALAPGARVAVLGGGFIGLEV
                     AASAVSRGCSVTVIEPASRLLQRSMPAEVGAFMLGLHRRHGVDMQLDTTPLAINKTPT
                     GSLVKTDRGDVPADVVVIGIGVVPNVELAVSAGLLVDNGIVVDQHCRTADPLIFAAGE
                     VTSHFNALLGRHVRVESWQVAENQPAVAAANMLGGEEHYAEMPWLWSDQYDCNVQTLG
                     VFAAHQSVFRRDDSKGDAFCMLALGVDDRLEAAVTVNCGREMAVCRRLMAAGKVLDHA
                     RLTDPDTPLKALLK"
BASE COUNT          599 a          761 c          910 g          562 t
ORIGIN      
        1 tgttccatac gacgttcaac attttccgcg tcggcatgaa ggcgcgttcc atacccgatg
       61 caacgcatgg actgcacagc atcattacgg tgacgaagac cggtgaggac acgtcggccg
      121 cgtacaagca gcaaaacatt cgctccttcg acgaaggttt tacgcttgaa gatgactcca
      181 tcctcggcct gatttccgaa tacgaagaag acacgaccaa tcatatccag ccgatcttcc
      241 cgcaactcgt gatccagcag attcacaaca cgctggttgc acggcagttg ctgcctaaag
      301 gtcccaacag cttcgagttg attttccact tcttcggata taccgacgac acgccggaaa
      361 tgcgcgagtt gcgcatcaag caggcgaacc tggtgggacc tgcaggctat atctcgatgg
      421 aagacacgga agccaccgaa ctggttcagc gcggcacgat ccgcgacgcc ggcgcgacgt
      481 cggtgatcga aatgtcgcgc ggcaatccgg accagcagga cacggttatc accgaaagcc
      541 tgatccgcaa gttctgggtt ggctaccaga agctgatggg ttattgaacg tcgaggaaag
      601 agatcatgga agcaatgaag ctgtggttcg aactgcacat gctgcaggac cagtacatca
      661 acaacctcga caacgaccgt ctcgaagcct ggccgacgct gttcaccgaa gactgtcttt
      721 acgaaatcat accgaaggaa aacgccgaca tgggtcttcc aatcggcatc atctattgcg
      781 acaaccagaa gatgctgcgc gaccgcgtgg tgtcgctgcg caatgccaat atcttcgagg
      841 aacacagtta ccggcacatg acgtcggggc tctgcgtggt ggccgagaag gacggcgtga
      901 tcgagacgga aagcaattac gttgtgatcc agacgcgcac ggatggtgaa tcgaatgtgt
      961 atcaggcggg caagtactac gacaaggtcg tgcgcactga cgctggtttg cgttaccagt
     1021 caaagcgcgt gatctatgac acctcgcgtg tgcagaccct gctcgccaca ccgatctgaa
     1081 ggggataaga atgaaccagt tggctcaagc ctggtttcca gtcggcgcac tcgatgactt
     1141 cgaagaaggt gaaccggtcg ctgtggttgc gggtaacaaa cccatcgcgg ttttccgttt
     1201 aggcgaagaa attttcgcgc tgcacgatct ttgtacgcat ggccacgcgc gcctctcgga
     1261 ggggttcgtg gagaacggtt gtgtcgaatg tcccctgcat caggggctcg tcgatattcg
     1321 tacgggcgcg ccgcaatgtg cgcctatcgt ggaagcggtc cgcacgtatc cggttcgcat
     1381 caacgagggc agcgtcgaga tccatgtcga atgaagccta tgtgatcgtc ggcgcgggac
     1441 atgccgcgcg ccgcgccgcg gaaacgcttc ggttgaaagc gccggagagc cgcaccctga
     1501 tgatcggcga ggaagcggaa ctgccttacg accggccggt gttatcgaag gatgcattgc
     1561 ttggaatcga aggcgagcaa cgtgctttta tccgcgatgc gcactggtac gcgcagcagt
     1621 gtatcgagat gcggctgggc gtgcgggtga gcgcgatcga tcgcgaacag cggtgcgtgg
     1681 ttctcagcga tggcgcgcgg atcggctatg agcgtttgct gatcgcgacc gggtcccgcg
     1741 tgcggcgttt cagcggaccg gtcgaggagg gcgtggcgct gcattacgtt cgtaccatcg
     1801 ccgatgcccg tgcgctgcgc gaagcgctcg cgccgggcgc tcgggtcgcg gtgctgggag
     1861 gtgggtttat cgggctggaa gtggcggcgt cggcggtatc gcgtggctgc tcggtgacgg
     1921 tgatcgagcc cgcaagccgc ttgttgcagc gatcgatgcc ggctgaagtt ggtgcgttca
     1981 tgctcgggtt gcatcggcgt catggcgtgg atatgcagct cgacaccacg ccgcttgcca
     2041 tcaacaagac gcccaccggc tctctcgtca agaccgatcg cggcgacgtg ccggcggacg
     2101 tggtggtgat cggcataggc gtcgtgccta acgtggagct tgccgtatca gcgggattgc
     2161 tcgtcgataa cggcattgtg gtggaccaac actgtcgaac agcagatccg ctgatcttcg
     2221 cggcaggcga agtgacgagt catttcaacg cgctgctggg acggcatgtg cgcgtggagt
     2281 cgtggcaagt ggcggagaac cagcctgccg tggcagccgc gaacatgctt ggcggcgagg
     2341 aacattacgc cgagatgccg tggctttggt ctgatcaata tgattgcaat gtgcagacgc
     2401 tgggcgtttt tgcggcgcat caatcggtct tcaggcgcga cgactcgaaa ggagacgcgt
     2461 tctgcatgct ggcgcttggc gtggacgaca gactcgaggc tgcggtgacg gtgaactgcg
     2521 gccgggaaat ggcggtgtgc cgacggttga tggctgcagg aaaagtattg gaccacgccc
     2581 gtctcaccga tccggatacg ccgcttaaag ccttgctcaa atagaggttt gtcttgaccg
     2641 gaggcggtgc ctaagtcgaa acgaaagctt attcggaaag cttgagaagc gcgcgggtat
     2701 gatctacgtc tggaagtttc tggggcggcg aacaagcagt ggcggatacc cgtccaccgc
     2761 tcaacgccgc ggacaaactg gacgtagagg agagatttaa cgcatgaagt tcgacacagt
     2821 cgtgctgggc gc
//
LOCUS       DATGBK010000158         1569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_48313, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000158 DATGBK010000000
VERSION     DATGBK010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48313"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /locus_tag="VKJ77_02305"
     CDS             <1..631
                     /locus_tag="VKJ77_02305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
                     /protein_id="HMC44138.1"
                     /translation="SLFLAHLLVELLPEEPETLGLLALMLYAQARRDARRDKAGDYVP
                     LSAQNPATWNAPMIDAANALLGRASAFNAIGRFQLEAALQSAHVHRCRTHRPNWDEIV
                     QLYDALLAIAASPVVAVNRAIALAERDGPQAALDALAPYADDPRLADYQPYWAARADL
                     LARAGATAEALGAYDLAIGLERDPAVRRFLQRKRMELTFPSNSIGDGLS"
     gene            complement(649..813)
                     /locus_tag="VKJ77_02310"
     CDS             complement(649..813)
                     /locus_tag="VKJ77_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HMC44139.1"
                     /translation="MPTYQYRCEKCGHLFEHAEHLAEHASAHPSCPKCGSETSQHAPT
                     PFIAKTSKKS"
     gene            1049..1534
                     /locus_tag="VKJ77_02315"
     CDS             1049..1534
                     /locus_tag="VKJ77_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020749734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine-specific kinase"
                     /protein_id="HMC44140.1"
                     /translation="MQVLTVTIVKPEATNFILGQSHFIKTVEDLHEAMVGTVPGIKFG
                     LAFCEASGKRLVRRSGTDADLVELACQNATAIGAGHSFVIFLGDGFYPVNVLNAIKAV
                     PEVCRIFCATANPTQILVAETEQGRGILGVVDGFPPLGVENEEDVQWRKDLLRAIGYK
                     V"
BASE COUNT          286 a          466 c          496 g          321 t
ORIGIN      
        1 gtcgctgttc ctcgcgcacc tgctcgtcga gctgctgccc gaggagccag agacgctggg
       61 tctgctcgcg ctgatgctgt atgcgcaggc gcggcgcgat gcccgacgcg ataaggccgg
      121 cgactacgtg cccctgtcgg ctcagaatcc ggcgacatgg aacgcgccga tgatcgatgc
      181 agccaacgca ctgctcgggc gtgcgagcgc attcaacgca atcggacgct ttcaactcga
      241 ggccgcgctg cagtccgcgc acgtgcaccg ctgccggacc catcgcccca actgggacga
      301 gattgtgcag ctctacgatg cgctgcttgc gatcgcggcg tcgccggtgg tcgcggtgaa
      361 ccgcgcgatc gcgctggcgg aacgggacgg cccgcaggcg gcgctcgacg cgctcgcgcc
      421 gtatgcggac gatccacggc tggccgacta ccagccgtac tgggccgcgc gcgccgatct
      481 gctcgcgcgt gctggcgcga cggccgaagc gctcggcgcg tacgatctcg cgattggcct
      541 cgagcgcgat ccggccgtgc gccggttcct gcagcgcaaa cgtatggagc ttacgtttcc
      601 atcgaattcc attggcgacg ggctaagctg atcatgcgag cttggatctc agctcttttt
      661 tgaggtcttg gcgataaatg gcgtcggtgc gtgctgagac gtctcgcttc cgcacttcgg
      721 gcaacttgga tgggcgctcg catgttcagc gagatgttca gcgtgctcga acaaatggcc
      781 acacttctcg caacgatatt ggtaggttgg catctgcatt tctccaacac gaatccacct
      841 ggccggcctg acacgactca cgcaatttcc ggcactgtga aaattcattc tagtgcagga
      901 aatgcacagg catgcgtctc aggttcgtac taggcttgga ttatggtcaa ggcgatcgcc
      961 gtccggcgaa acgtgatgaa ctgatacccg cctgctggcg aaaaccgcta ctccccagtg
     1021 ttcctggcga catagagcga ggtccaatat gcaagtgctt acggtaacaa tcgtcaaacc
     1081 cgaagcgacg aatttcatcc tggggcaaag ccacttcatc aagactgtgg aggatctgca
     1141 cgaggcaatg gtcggtaccg tcccgggtat caagtttggt ttggcctttt gtgaagcgtc
     1201 aggtaagcgc cttgtgcgcc ggtcgggcac cgacgccgac ctggtcgaat tggcgtgcca
     1261 gaacgccacg gccatcggtg cgggccacag cttcgtgatt tttctcggcg atggctttta
     1321 ccccgtcaat gttctgaatg cgattaaagc ggtgccggag gtatgccgga tattctgtgc
     1381 gacggcgaat cccacgcaga ttctggtggc cgagacagag caggggcgcg gcatcctggg
     1441 tgtggttgac gggttcccgc cactcggcgt ggaaaacgag gaggacgttc aatggcgtaa
     1501 ggatctgtta cgtgctatcg gttacaaagt gtaggtacgg ttgctctcct cgcgcgaccc
     1561 gcgtgcccg
//
LOCUS       DATGBK010000159         1795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_325955, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000159 DATGBK010000000
VERSION     DATGBK010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325955"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..905
                     /locus_tag="VKJ77_02320"
     CDS             <1..905
                     /locus_tag="VKJ77_02320"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HMC44141.1"
                     /translation="NRGTHDVDRDLPITRIYGDRTNAIDLARIPAHGWDAVVDPSSAV
                     PEIVDAAVRHLRAAGRYVYISSVSVYHVDRPAIDEDSDVIETLDGDPGADEAFGWRKV
                     MNERRVAATFGARSVLLRPGLISGPFDPTDRFTYWPVRFWRGGNVVVPAPPERKVQVI
                     DVRDVADFIVRSIEAQLSGTYNLTTARDALSMRDVVDACRDGLDLLPAATWIDGAFLA
                     EAGCEGWVDLPLWLPPDSVFNGLFRVDVSKAVRAGLTYRPLHETVRDIRDWYAASGRT
                     ELKAGLTPQKESELLDAWTAVTSS"
     gene            881..>1795
                     /locus_tag="VKJ77_02325"
     CDS             881..>1795
                     /locus_tag="VKJ77_02325"
                     /inference="COORDINATES: protein motif:HMM:NF019375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1611 domain-containing protein"
                     /protein_id="HMC44142.1"
                     /translation="MDRRYLILAPNVFATRSAKTAHGVIAYSSDVTVAVIDPSHAGKR
                     VRDVLSYLDSDAPIVPDVAAGLAYRPTSLLIGIAPQGGGLPPEFRLAVIDAIRAGLEI
                     VSGLHTILGDDPELAALARTHDSRIWDLRLPPAAPLFSGAAYDIEARILLMVGSDCAV
                     GKMTAALELTRAACDKSVDAAFIPTGQTGIAIAGWGTAIDRVIADFAPGAAEQLVLEG
                     ERRAKDLLVVEGQGGINHPAYAPVTLALLYGSAPDALVLVHVPTRTVIDGYDIPLLGY
                     RELIRSYESLCAGVKPANVVGIALNTKDM"
BASE COUNT          324 a          562 c          541 g          368 t
ORIGIN      
        1 ttaatcgcgg aacccacgat gtcgatcgcg atcttcccat cacacgtatc tacggcgacc
       61 gtaccaacgc aatcgatctt gcgcgtattc cggcgcatgg ctgggatgca gtcgtcgatc
      121 caagttccgc cgttccggag atcgttgacg ctgccgtgcg tcatctgcgt gccgccggtc
      181 ggtacgttta catctcgtcg gtgtccgtat atcacgtcga ccggccggca attgacgaag
      241 attcggacgt gatcgaaacg ctcgacggcg atcccggggc cgacgaagca ttcggctggc
      301 gcaaggttat gaacgaacgg cgcgttgccg cgaccttcgg tgcgcgatcg gtcctactgc
      361 gaccgggttt gattagcggc ccgttcgatc cgacggatcg cttcacgtat tggccggtac
      421 gtttctggcg cggcggtaat gtcgtcgttc cggcaccgcc cgagcgcaag gttcaagtga
      481 tcgacgtccg ggacgtcgcc gatttcatcg tgcgctcgat cgaagcgcaa ttgtccggga
      541 cctataacct cacaacggcg cgcgatgcgc tctccatgcg cgatgttgtc gacgcgtgcc
      601 gcgacggact ggatctgctg ccggcggcaa cgtggatcga tggcgcgttt ctcgctgaag
      661 ccggatgcga aggctgggtg gaccttccac tatggctgcc gcctgattcg gtcttcaacg
      721 gactatttcg cgttgacgta tcgaaggccg tgcgcgccgg gctgacatac cggccgttgc
      781 acgaaacggt ccgggacatc cgcgactggt acgcagcaag cggacgcacg gaacttaaag
      841 ccggactcac accgcagaaa gaatcggaac tgctcgacgc atggaccgcc gttacctcat
      901 cctagccccg aacgtgtttg caacgcgttc tgcaaaaacc gcgcacggcg ttatcgcgta
      961 ctcaagcgat gtcaccgttg cggtgatcga cccgagtcac gccggtaaac gcgtgcgcga
     1021 cgtgttgtcc tacttggatt ccgacgcgcc gatcgtaccc gatgttgcag ccggtcttgc
     1081 ctataggccc acgtcgttgc ttattggtat cgcaccgcaa ggtggcgggc taccgccgga
     1141 atttcgcctt gccgtcatcg atgctattcg cgcgggactt gaaatcgtca gcggtttgca
     1201 caccatactc ggcgacgatc ccgaacttgc cgcactcgcg cggacacatg attcacgcat
     1261 ctgggatttg cgtttgcctc cagcagcgcc acttttttcc ggcgccgcct atgatattga
     1321 agcgcgcatt ctcttgatgg tcggcagcga ttgcgcggtc ggcaaaatga cggccgccct
     1381 cgaactgacg cgcgccgcat gcgacaagtc cgtcgacgcc gcatttattc cgaccggaca
     1441 aacgggcatt gccattgccg gttggggcac ggcgatcgat cgcgtgatcg ccgacttcgc
     1501 gccgggcgcg gccgagcagc tcgtgctcga aggcgaacgc cgcgccaagg atctgctcgt
     1561 ggtcgaaggt cagggcggaa ttaaccatcc cgcgtacgcg cccgtcacgc tggcactcct
     1621 atacggaagc gcgcccgatg cactcgtgct cgtccacgtt ccgacgcgta cggtcatcga
     1681 cggctacgac attccgctgc tcgggtaccg cgaactgatc cgctcgtacg agagcttgtg
     1741 tgccggcgtg aagcccgcga atgtcgttgg catcgcgctc aatacgaaag atatg
//
LOCUS       DATGBK010000160         3199 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_48348, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000160 DATGBK010000000
VERSION     DATGBK010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48348"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..308
                     /locus_tag="VKJ77_02330"
     CDS             <1..308
                     /locus_tag="VKJ77_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010104671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC44143.1"
                     /translation="EPLSPDALAEEIGVTRRQLERLFCSAMKDTPTHFYLGLRLARAR
                     ELLQQTDMSITTVCVACGFESPSHFSRTYRTRFGSSPRQDRSSPRATAPVGETVAAS"
     gene            complement(325..1473)
                     /locus_tag="VKJ77_02335"
     CDS             complement(325..1473)
                     /locus_tag="VKJ77_02335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015603583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC44144.1"
                     /translation="MKKRNAVKLAALALSAGVVSAPAVVRAQSSVTLYGILDAGITYV
                     NNTGGSHVVKFDDGISYGNRFGLKGTEDLGGGLKAIFVLENGFHLGNGTFAQGGAEFG
                     RQAYVGLQNQWGTISAGNQLDLTNEFMEGYNISSFGSGYAIHQGDFDRMNGDRLPNSI
                     KYMSPDISGLTFGGLYSFGNVAGDFHEKSAYSLGAHYAHGDFTIGTAVTRLNNPNGIY
                     AFDPYAMIGTKTFLGQTVATVNATTGAVTDLFSSTAFNVDSQMTYGIGSSYALGNLTL
                     LGNYTYTTIKGFGQSSHMHVGEGGAEYNFTPALILYGGYQFTAFEGHKWNMGSLGLHY
                     LLSKRTDVYVSGDYLKASSGVNAVIGYSFTPSTSSTQSDVRIGIRHSF"
     gene            complement(1740..2690)
                     /gene="choX"
                     /locus_tag="VKJ77_02340"
     CDS             complement(1740..2690)
                     /gene="choX"
                     /locus_tag="VKJ77_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015220 - choline transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015871 - choline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="choline ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC44145.1"
                     /translation="MKKPLQHALFCIAALCASIGTVIAAEPQSCQQVKMADPGWTDID
                     ATNAMAGVVLKALGYKQSVSNLSVPITYQGLKKGQVDAFLGNWMPAQGPLVKQFLDEK
                     SIDVVHPNLTNAKFTLAVPDYVAAAGVHTFADLQKNLDKFDGKIYGIEPGAPANQNIK
                     KMIDEKAFGLNGWKLVESSETGMLTQVERSVRDKKWIVFLAWEPHLMNTKFHLTYLDG
                     GDKYFGPNFGGATVNTVARAGYAGECPNVGRLFKQMTFNVDLENGIITDVLQNKTNVD
                     TAAAAALKRNPDLVKGWLDGVTTTTGGNGWQAVQTALGSK"
     gene            complement(2743..>3199)
                     /locus_tag="VKJ77_02345"
     CDS             complement(2743..>3199)
                     /locus_tag="VKJ77_02345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="choline-sulfatase"
                     /protein_id="HMC44146.1"
                     /translation="LDGRSLVPHLSGEPQAHDEAIGEYLAEGAIAPIVMLRRGDFKFI
                     HTPSDPDQLFNVTADPLERTNLATLPEHAARVSTLREEIAGRWDLGALREEVVQSQRR
                     RQFHFEATTLGRIESWDWQPSVDASQRYMRNHIDLDTLEAMARFPAVTR"
BASE COUNT          612 a          963 c          923 g          701 t
ORIGIN      
        1 aggaacccct gtcgccagat gcactggcag aggaaatcgg cgtgacgcga cgtcagcttg
       61 aacgcctgtt ctgctcggca atgaaagaca cacccaccca cttctatctc ggactgcgcc
      121 ttgcacgcgc ccgcgaatta ctacaacaaa ccgacatgtc cattaccacg gtctgcgtgg
      181 catgcggctt cgaatcgccg tcgcactttt cacgcaccta ccgcacgcgc ttcggctcaa
      241 gcccgcgcca ggaccgcagt tcgccgcgcg cgacggcgcc cgttggggaa accgtcgcgg
      301 caagctgaaa caaacaaata acgcttagaa cgagtgccgg ataccaatgc gaacatcgct
      361 ttgggtgctc gacgtcgacg gcgtaaagct atagccgatc accgcgttca caccactcga
      421 tgccttgagg tagtcgcccg acacgtagac gtcagtacgc ttggacaaca ggtaatgcag
      481 cccgagcgaa cccatgttcc acttgtggcc ttcgaaagcc gtgaactgat aaccaccgta
      541 caggatcaac gcaggcgtga agttatattc cgcaccgcct tcacccacgt gcatgtgcga
      601 cgactgtcca aagcccttga tcgtggtgta ggtgtagttg cccaacaggg tcaggttccc
      661 gagcgcgtac gaggacccaa tgccgtaagt catctggctg tcgacgttga acgcggtgct
      721 gctgaacagg tcggttacag cgcccgtcgt cgcgttcacg gtcgcaacgg tctggccgag
      781 gaaggtcttc gtgccaatca tcgcgtacgg gtcgaatgca tagatgccgt tcggattgtt
      841 caggcgcgtg accgccgtgc cgatcgtgaa gtcgccgtgc gcgtagtgcg cgcccaagct
      901 gtatgcgctc ttctcgtgga aatcacccgc aacattgccg aacgaataca agccgccgaa
      961 cgtcaggccg ctgatatcgg gcgacatgta tttgatcgag ttcggcaagc ggtcgccgtt
     1021 catgcggtcg aagtcgccct ggtggatcgc gtagccgctg ccgaacgagg agatgttgta
     1081 accctccatg aactcgttcg tcaggtcgag ctggttaccc gccgagatcg tgccccactg
     1141 gttctgcaag cccacataag cctgccggcc gaattccgcg ccgccctggg cgaaggtgcc
     1201 gttgcccagg tggaagccgt tctcgagcac gaagattgcc ttcaatccgc cgcccaggtc
     1261 ttcggttccc ttcaaaccga accggttacc gtacgagata ccgtcgtcga atttgacgac
     1321 gtgcgaaccg cccgtgttgt tgacgtaggt aataccggcg tcgaggatac cgtacagcgt
     1381 cacgctgctt tgcgcgcgaa ccacggcagg tgcggacacg acgcctgcgc tcaacgctag
     1441 ggccgccagc tttacggcat ttcgcttctt catcgttgat tctccctgat acccgctttt
     1501 gcacgtttcg ttggaccaag cgaggtccgc gctgctccgg cgatggattg acatcgcgca
     1561 acgctgctcg ctcgaatttt tattgcagag actggcgtac tacagtgatc tgacgcatgg
     1621 ggtgcgggtg catgcattga gcttcaagcg catgcaccag ccttgcaaaa gtaagaggcc
     1681 atatttactg gggctcgacc ttttgcgacg taaatctgtc cagttgcgac ccactgttgt
     1741 tatttggaac caagcgctgt ttgcacggct tgccacccat ttccacccgt agtcgtggta
     1801 acgccgtcaa gccaaccctt cacgagatcc gggttgcgtt taagcgccgc tgcagcagcg
     1861 gtatcgacgt tggtcttgtt ttgaagaaca tccgtgatga tgccgttctc caggtcgacg
     1921 ttaaatgtca tctgcttgaa aagacgtccc acgttcgggc attcacccgc gtagcccgcg
     1981 cgcgcgaccg tattgaccgt cgcgccgccg aagttcgggc cgaagtattt atcgccgcca
     2041 tcgaggtagg tgagatggaa cttcgtgttc atcagatgcg gctcccacgc aaggaacacg
     2101 atccacttct tgtcgcgcac ggagcgttcc acttgcgtca gcatgccggt ctcactcgac
     2161 tccaccagct tccagccatt caatccgaag gccttttcat cgatcatttt cttgatgttc
     2221 tgattcgccg gagcgcccgg ttcaatgcca taaatcttgc cgtcgaactt gtccaggttc
     2281 ttctgcaagt cggcgaacgt gtgcacgccg gcagccgcca cgtagtccgg tacggccagc
     2341 gtgaatttcg cgttggtcag gttcgggtgc accacgtcga tcgacttctc atcgaggaac
     2401 tgcttgacca atggcccttg cgcgggcatc cagttcccca ggaacgcgtc gacctgacct
     2461 ttcttcaacc cctgatacgt aatcggcact gaaaggttcg agacgctctg cttataaccg
     2521 agcgctttca gcacgacgcc ggccatggcg ttggtagcgt cgatatcggt ccagcccggg
     2581 tccgccatct tcacctgctg gcagctttgg ggctcggcgg cgattaccgt accgatggat
     2641 gcgcagagtg ccgcaatgca gaatagcgcg tgctgtaagg gctttttcat gttggcttcc
     2701 tgtgagtggt gtggttttgg ttgtagttca gtggcttggg cgttagcgcg tgacagcggg
     2761 aaaacgcgcc atggcttcga gcgtgtcgag gtcaatgtga ttgcgcatat agcgttggct
     2821 ggcatcgacc gacggttgcc agtcccatga ttcgatacga cctagcgtgg tcgcttcgaa
     2881 gtgaaattgc cggcgccgct ggctttgcac gacctcttcg cgcagcgctc cgagatccca
     2941 gcgcccggcg atttcctcgc gcaacgtaga gaccctcgcc gcgtgttcgg gcagcgtcgc
     3001 gaggttggtg cgttcgagtg gatccgcggt gacgttgaag agctggtcgg ggtccgaggg
     3061 cgtatggatg aacttgaagt cgccgcgacg cagcatcacg atcggcgcaa ttgcgccttc
     3121 ggccaggtac tcgccgatgg cttcatcgtg tgcctgcggc tcgccgctca gatgcggcac
     3181 gagactccgg ccatcgagc
//
LOCUS       DATGBK010000161         1540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_187144, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000161 DATGBK010000000
VERSION     DATGBK010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187144"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..367)
                     /locus_tag="VKJ77_02350"
     CDS             complement(<1..367)
                     /locus_tag="VKJ77_02350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018432813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine dioxygenase"
                     /protein_id="HMC44147.1"
                     /translation="MSHVKLRGFISEIAQLVDKNLPEAHLLEQGAVSLSKLIAEDDWL
                     PDAYAQPSPDRYQQFLLYADARQRFSVVSFVWGPGQQTPVHDHTVWGLVGVLRGAEVA
                     RSYARSDHGVLVTSGEDQLL"
     gene            complement(382..1458)
                     /locus_tag="VKJ77_02355"
     CDS             complement(382..1458)
                     /locus_tag="VKJ77_02355"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC44148.1"
                     /translation="MSVEFIGMIQQQKVSETYLARGPAIDIDYLRDFAQAHEKAGFDR
                     ILVPYQSTSPDAMLTVAYAAGVTQRIHFMLAHRPGFVAPTLAARQLATLDQLSGGRLA
                     VHFISGGSDVEQRRDGDFLSHDERYARTDEYLQILRRVWTESEPFDHEGRYYRFEKAF
                     SEVKPKQAPYVPIYFGGASAPAIEVAGKHADVYALWGESKEQVREQVTRVRAEAAKHG
                     RNVRFSVSFRPILAATEKAAWERAEHILAETRRLRAEQGLGEATPQQSEGARRLLAAA
                     GDGVRADDRLWTGVAKEIGGRSNSTALVGTPAQVAQTLAEYHALGVTTFLIRGFDPLE
                     DALDYGRELIPATRELTSQIAHAA"
BASE COUNT          280 a          451 c          496 g          313 t
ORIGIN      
        1 cgagcaactg gtcttcgccc gatgtgacaa gcactccgtg gtcgctgcgt gcatacgagc
       61 gtgcgacttc cgcgccgcgc aatacgccga cgaggcccca caccgtgtga tcgtgaacgg
      121 gcgtttgttg acccggtccc cacacgaagc tgacgaccga gaagcgttga cgcgcatcgg
      181 cgtaaagcag gaattgctga tagcgatcag gcgacggttg cgcgtaggca tcgggcagcc
      241 agtcgtcttc ggctatcagc ttgctcagcg aaaccgcacc ttgttcaagc aggtgcgcct
      301 caggtaaatt tttatcgacg agttgcgcaa tctcgcttat aaatccgcgc agttttacat
      361 ggctcatcgc ttattgtagc gtcacgccgc gtgcgctatt tgcgaggtca gctcacgcgt
      421 ggcagggatc agctcacggc cgtaatcgag cgcgtcttcc agcggatcga agccgcgaat
      481 caggaacgtg gttacgccga gcgcgtgata ttcggccagc gtttgcgcta cttgagctgg
      541 ggtgccaacg agtgccgttg aattcgaacg gccaccaatc tccttcgcca cgcccgtcca
      601 caggcgatcg tcggcgcgca cgccgtcgcc ggctgcggcg agcaagcgac gcgcaccttc
      661 gctttgctgc ggcgtcgctt caccgaggcc ttgctcggca cgcagccgcc gcgtttcagc
      721 aagaatatgt tcagcgcgtt cccacgcggc cttttcggtt gctgcaagaa ttgggcggaa
      781 cgatacggag aagcgcacgt tgcgcccatg ttttgccgct tcggcgcgaa cgcgggtgac
      841 ctgttcgcgc acctgttcct tcgattcgcc ccacagcgcg tagacgtctg cgtgtttgcc
      901 cgcgacctcg atagccggtg ccgatgcgcc gccgaaatag atcggtacat acggggcttg
      961 cttgggcttt acttcggaga aagccttttc gaagcggtaa tagcggccct cgtgatcgaa
     1021 gggttcggat tcggtccaca cgcgtcgcag gatctgcaga tattcgtcgg tgcgggcgta
     1081 gcgttcgtcg tgcgagagaa agtcgccatc gcggcgttgc tcgacgtcgc tgccgcccga
     1141 gatgaagtgt accgcgaggc gtccgccgct tagctgatcg agcgtggcga gttggcgggc
     1201 ggccagggtc ggtgcgacga atccagggcg atgcgcgagc atgaagtgga tgcgctgcgt
     1261 gacgccggcc gcgtaggcga cggtcagcat ggcgtcgggg ctggtcgact gatagggcac
     1321 gagaatgcgg tcgaagccgg ctttttcgtg cgcctgggcg aagtcgcgga ggtagtcgat
     1381 atcgattgcc ggaccgcgtg ccagatacgt ctccgacact ttttgctgct ggatcatgcc
     1441 gatgaattcg acgctcacga aagacgctcc tcgttgattc acactggaag gcagagcgtg
     1501 aagagacgct tcaggacgct gccgatagca ctaaaggcta
//
LOCUS       DATGBK010000162         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_210144, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000162 DATGBK010000000
VERSION     DATGBK010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210144"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1709
                     /locus_tag="VKJ77_02360"
     CDS             <1..>1709
                     /locus_tag="VKJ77_02360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020701423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HMC44149.1"
                     /translation="NFTMPLALSSKLYALHFDNPQIGYLDFDSKKSNRLAYETIGGRK
                     TYQVIAGDTWEDVVGNYTTLTGKQPMPPRWAFGNFASRFGYHSEEEARKTVAKFIADD
                     IPLDAIIFDLYWFGKEMKGTMGNLEFNKDAFPTPQKMIADFKDKGVKTVLITEPFVLT
                     TSQKWQDAVDHKILGTDAAGAPLTYDFYFGHTGLIDVFSQPGKDWFWNIYKGLHDQGV
                     AGWWGDLGEPEVHPSAMRHATGTADQVHNIYGHDWAKLIFDGYRKDYPQERPFILMRA
                     GYSGSQRFGMIPWSGDVDRSWGGLQSQPEIALQMGMQGMGYMHSDLGGFANAYLDNEL
                     YTRWLQYGVFQPVFRPHAQEEVASEPIFRDAKTEALARDAIRLRYRMLPYNYTLAFDN
                     NQRGLPLMRPMLYEEPGEQNAYAMSSTYLWGDDFLVTPVTAAGALKQRVYFPKKGPWF
                     DFYTDQKHGGGITEAVDVAADHIPVYVRAGAFIPLTKVVRSTRDYSTKNLELHYYHDA
                     SVHAASGKLYDDDGETMQAYEQGKYELLHFAGALDGRELALTLSSEVGAQYQRPRRGV
                     ALT"
BASE COUNT          354 a          508 c          530 g          317 t
ORIGIN      
        1 tgaactttac gatgccgctg gcgctgtcgt ccaagctgta cgcgctgcac ttcgataacc
       61 cgcaaatcgg ctatctcgat ttcgacagca agaagagcaa ccgactcgcc tacgaaacca
      121 tcggcggccg caagacttat caggtgatcg ccggcgatac gtgggaagac gtggtcggga
      181 actacacgac gctgaccggc aagcagccga tgccgccgcg ctgggctttc ggtaatttcg
      241 ccagccgctt cggctatcac agcgaggagg aggcacgcaa gacggtcgcc aaattcatcg
      301 ccgacgacat tccgctcgac gccatcatct tcgacctgta ctggttcggc aaggagatga
      361 agggcacgat gggcaacctt gaattcaaca aggacgcctt cccgacgccg caaaaaatga
      421 tcgcggactt caaggacaag ggcgtcaaga cggtgctgat caccgagccc ttcgtgctga
      481 ccacgtcgca gaaatggcag gacgcggtcg atcataaaat cctcggcacc gatgccgccg
      541 gcgcgccgct gacttacgat ttttatttcg gccacacggg cctgatcgat gtcttcagcc
      601 agccgggcaa ggactggttc tggaatatct ataagggact gcacgatcag ggcgtcgccg
      661 gctggtgggg cgacctgggc gaaccggaag tgcatccctc ggcgatgcgc cacgccaccg
      721 gcacagcaga tcaagtccac aacatctacg gccacgattg ggccaagctg attttcgacg
      781 gctaccgcaa ggactatccg caggaacggc cgttcatcct gatgcgcgcc gggtattcgg
      841 gctcgcagcg cttcggcatg atcccgtggt ccggcgacgt cgatcgcagc tggggcggtt
      901 tgcaatcgca gccggagatc gcgctgcaaa tgggcatgca gggcatgggc tatatgcatt
      961 cggatttggg cggcttcgcc aatgcgtacc tggataatga gctgtacacg cgctggctgc
     1021 aatacggcgt gttccagccg gtgttccggc cgcacgcgca agaggaagtg gcgtccgagc
     1081 cgatcttccg cgatgcgaag acggaagcgc tggcgcgtga tgcaatccgc ttgcgttatc
     1141 gtatgctgcc atataactac acgctcgctt tcgataacaa ccagcgcggc ctgccgctga
     1201 tgcggccgat gttgtatgaa gaaccgggcg agcaaaatgc gtatgcgatg tcgtcgacct
     1261 atctgtgggg cgacgatttc ctggtcacgc cggtgacggc ggccggtgcg ctgaagcagc
     1321 gcgtctactt ccctaagaag gggccgtggt ttgattttta cactgaccag aaacacggcg
     1381 gcggcattac cgaagcggtc gacgtggcgg ccgatcacat tccggtctac gtgcgcgccg
     1441 gcgcgtttat cccgctgacc aaggtggtac gcagcacgcg cgattactcg accaaaaatc
     1501 tggagctgca ctactatcac gacgcgtcgg tgcacgccgc cagcggcaag ctgtatgacg
     1561 atgacggcga gacgatgcaa gcctatgagc agggcaagta cgagctgctg cactttgccg
     1621 gcgcgctcga tggccgcgaa ctcgcgttga cgctgtcgtc cgaagtcggc gcgcagtatc
     1681 agcgtccacg gcgcggcgtg gcgctgacc
//
LOCUS       DATGBK010000163         1819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_187147, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000163 DATGBK010000000
VERSION     DATGBK010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187147"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VKJ77_02365"
     CDS             <1..564
                     /locus_tag="VKJ77_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019254933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC44150.1"
                     /translation="TKTDRMGNLEVADHKQLQRVRTKLAMVFQHFNLWAHMTSIENVM
                     EAPMHVLGLSKKEATERARECLEKVGLAPKVEKQYPSHLSGGQQQRVAIARALAMHPD
                     VMLFDEPTSALDPELVGEVLKVMQKLAEEGRTMIVVTHEMGFARNVSNHVMFLHQGRT
                     EEEGAPAEVLSTPRSERLQQFLSGSLK"
     gene            812..>1819
                     /locus_tag="VKJ77_02370"
     CDS             812..>1819
                     /locus_tag="VKJ77_02370"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine/succinyldiaminopimelate
                     transaminase"
                     /protein_id="HMC44151.1"
                     /translation="MTDINVTRGTFDEVMVPLFSPANFVPDRGLGSRVWDTEGRDYVD
                     FAGGIAVTALGHAHPELLKVLHDQGQKLWHIGNGYTNEPVLRLATRLTNLTFADRAFF
                     ANSGAEANEAALKLARRYAIDNSGPQKVEIISFTQSFHGRTLFTVSVGGQPKYAEGFG
                     PTPQGITHLPYNDLAAARAAIGPQTCAVIVEPVQGEGGVLPADPAFLRGLREACDQHG
                     ALLIFDEVQTGVGRTGTFYAYMGYGVTPDILTTAKALGNGFPIGAMLTTDKIAAHFKV
                     GVHGTTYGGNPLGAAIADKVVELISDPAVLEGVQQRSAAIKAHLKRIDERFSIFKEIR
                     GK"
BASE COUNT          382 a          534 c          560 g          343 t
ORIGIN      
        1 acgaaaaccg atcgcatggg caatctcgaa gtcgcggacc acaagcagtt gcagcgcgtg
       61 cgcacgaagc tcgcgatggt gttccagcat ttcaacttgt gggcgcacat gacatcgatt
      121 gaaaacgtca tggaagcgcc catgcacgtg ctggggctat cgaagaagga agcgaccgaa
      181 cgggcgcgcg aatgcctgga gaaggtcggg ctggcgccca aggtggagaa gcaatatccg
      241 tcgcatttgt cgggcgggca acagcagcgc gtagccattg ctcgcgcgct cgccatgcat
      301 cccgacgtga tgctcttcga cgaacccacc tccgcgctcg atcccgagct ggtgggcgaa
      361 gtgttgaaag tgatgcaaaa gctggctgaa gaaggccgca cgatgatcgt cgtgacgcat
      421 gaaatgggct ttgcgcgcaa tgtatcgaat catgtgatgt ttctgcacca gggccgcacg
      481 gaagaagagg gtgcgccagc tgaggtgctg agcaccccca ggagcgaacg gctccagcaa
      541 ttcctgtccg gcagtctcaa gtaaggctga actcatcggc gtgggctccg gcgtggctgc
      601 gagaccttgg cggagcgatc aacgtgatcg ctccgtgacc gatgtccagc gacaggccgt
      661 gcgcctatgc ctttcggccg acttacaagc gtcaatcctc tcgaataccg tgaaaccttg
      721 tcgcgttccc gcaagacgcg acgcccgcgc acgcctacca tctgataacg atgtgtaagc
      781 tggattaccc gaacaagcaa aggagcggtt catgacggat atcaatgtaa cgcgcggtac
      841 gttcgacgaa gtaatggtgc ctcttttctc cccggcgaat ttcgtgccgg atcgcggact
      901 tggttcccgc gtatgggaca cggaaggccg ggactatgtc gatttcgccg gcggaattgc
      961 ggtgacagcg ttgggtcatg cgcatcccga actgctgaaa gtgctccacg atcaaggcca
     1021 gaagctctgg catatcggta atggctacac caacgaacca gtgttgcggc ttgcgactcg
     1081 cctcaccaac ctgacctttg ctgaccgtgc gttcttcgcc aactccggcg cggaagcgaa
     1141 cgaagctgcg cttaaactcg cgcgccgtta cgcgatcgac aactccggtc cgcagaaagt
     1201 cgaaatcatc tcgttcacgc agtcgttcca cggccggacg ctgttcaccg tcagcgtggg
     1261 cggccagccg aaatacgctg aaggctttgg cccgacgccg caaggcatca cgcatcttcc
     1321 ctataacgac ctggctgctg cccgtgccgc aatcggtccg caaacctgtg cggtgatcgt
     1381 tgaaccggtg cagggcgaag gtggcgtgct gcccgccgat cccgcgttcc tccggggtct
     1441 gcgcgaagcc tgcgaccagc acggcgcact gctgattttt gatgaggtac aaacgggcgt
     1501 gggccgtacc ggcacgtttt acgcatacat gggctacggc gtgacgccgg acatcctgac
     1561 gactgcgaag gcgctcggca atggttttcc gatcggcgca atgctgacga ccgacaagat
     1621 cgccgcgcat ttcaaggtcg gcgtgcacgg tacgacgtac ggtggcaatc cgctgggcgc
     1681 ggctatcgcg gacaaggtgg ttgaattgat cagcgaccct gccgtgctcg aaggcgtgca
     1741 gcaacgcagc gctgcgatca aggcgcatct gaagcgcatc gatgagcgtt tctccatatt
     1801 caaggagatt cgcggcaag
//
LOCUS       DATGBK010000164         1897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_256445, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000164 DATGBK010000000
VERSION     DATGBK010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256445"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..792)
                     /locus_tag="VKJ77_02375"
     CDS             complement(133..792)
                     /locus_tag="VKJ77_02375"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC44152.1"
                     /translation="MANIEAFQDKKLEPTHARLAAVLQALAEANELLAEIANTSTVAT
                     SSAHADEMNVCSVITSEILGFEASALKSGIALQVHQCEHAGAECRTFTGDPLRIAGIV
                     NNIVTNAIRYTPAGGRIEVDCRRADGTLKLAIADSGPGIDGSDQQHIFESGFRGSTAV
                     GTDGSGLGLEIARRFAEEQGGSVDVASVPGVGTEFVIRLPGMSREPTIQKQADGVISL
                     L"
     gene            complement(840..>1897)
                     /locus_tag="VKJ77_02380"
     CDS             complement(840..>1897)
                     /locus_tag="VKJ77_02380"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HMC44153.1"
                     /translation="PCIVWIADANGKTQWFNDEFRKYSGVSLEAVMHWSWLSPVHEED
                     RPALAHHWAESRAKAALLDSIVRLRGADESYRWFRIRARPFRGPSGEIEQWFGIFTDV
                     HDRQLELEANTHVLDVLMKGFLTKTFPTVAGLKFDTLYRAANVAEKIGGDWYDIFTLP
                     DGRIGFSIGDVSGHGIDAAVKMAEAKNAIFTAACLGDPAPERVLYQANRALFLNKPQV
                     SITTAVYGFVDRLRRTVTYGCAGHHPPILARAIGDAVVLPNHGFPLGVEEVMPPLIRT
                     HEISYDPGSMMVLYTDGLIEFTYDIFDGEKRLLRAATDAVSAKAEHPAKFIAAHVFQV
                     AEPADDVAILTISFDGN"
BASE COUNT          410 a          575 c          525 g          387 t
ORIGIN      
        1 accgccgcag gcatgctgca cggcggggcg gccggcggcg tttcatcggc acgcgccgga
       61 acagtccatg ctacggcgat aaaggccacg atcgccgccg aaaggttacg catacaccat
      121 ggcgcggggt ttctaaagca gcgaaattac tccgtcagct tgcttctgaa ttgtgggctc
      181 ccgcgacatg ccgggtagcc ggatcacaaa ttccgtaccc acgcccggaa cgctggcgac
      241 gtcgaccgac ccgccctgct cttctgcgaa gcgtcgcgcg atctctaagc ccagaccgct
      301 tccgtcggtt cccacagccg tgctgccgcg gaaacccgac tcgaaaatgt gctgctgatc
      361 ggagccgtca atccccggcc cggaatccgc aatcgcgagc ttgagcgtgc catcggcgcg
      421 acggcagtcc acttcgatcc ggccgccggc tggcgtgtag cggattgcgt tggtcacaat
      481 attgtttaca attccggcga tacgcaaggg gtctccggta aatgtccggc attctgcgcc
      541 ggcgtgttcg cactgatgca cttgcaacgc aatgccactc ttgagcgctg acgcctcaaa
      601 gccgagaatc tcgctggtga taaccgagca cacattcatc tcatcggcat gcgcagaact
      661 tgtggcgacc gttgaagtat tcgcgatctc cgccaacagc tcgttggctt ccgccagggc
      721 ctgtaaaacc gcagctaggc gagcatgcgt cggctcaagt ttcttatctt gaaatgcctc
      781 gatgtttgcc atcgccacgg caagccggtt ccgaatctca tgaatactat tcctaagcat
      841 cagtttccgt cgaaagaaat agtaagaatc gctacgtcgt ctgccggttc tgcaacttgg
      901 aacacgtgag cggcaatgaa ttttgccgga tgttcggcct tggcgctaac agcatccgtt
      961 gccgcgcgca gtaatctttt ttcgccgtcg aaaatatcgt aagtgaactc gattaagcca
     1021 tcggtataca gcaccatcat cgatccggga tcgtagctga tttcgtgcgt gcgaataagc
     1081 ggcggcatga cctcttcaac acccaacgga aatccatgat tcggcagaac gactgcatcg
     1141 ccaatggcac gcgcgagtat cggcgggtga tggcccgcac agccataggt caccgtgcgg
     1201 cgcagccgat cgacgaatcc ataaacggcc gtcgtgatcg acacctgcgg cttattgaga
     1261 aacagggccc gatttgcctg atacaggacg cgctccggag ccggatcgcc aaggcatgcc
     1321 gcagtaaaga tagcgttttt ggcttccgcc atttttacgg ctgcatcgat accgtgcccc
     1381 gagacatcac ctatcgagaa gccgatgcgg ccatcgggca acgtgaagat gtcgtaccaa
     1441 tcgccgccga ttttctcggc gacgttcgcc gcacgataga gcgtgtcaaa cttaaggccg
     1501 gctacggtcg ggaacgtctt ggtcaggaag cctttcatca aaacgtcgag gacgtgcgtg
     1561 ttcgcctcga gctcaagttg ccgatcgtga acatcggtaa aaataccgaa ccattgctcg
     1621 atctcgccac taggcccgcg gaatggtcgt gcgcggattc tgaaccagcg gtacgattcg
     1681 tcagcgccac gaagacgcac gattgaatca agcaaagccg ccttcgcgcg cgattcggcc
     1741 cagtggtgcg cgagcgcggg ccgatcctct tcgtgcacgg gcgaaagcca gctccagtgc
     1801 ataacagctt cgagcgagac accgctgtac ttccgaaatt catcgttgaa ccactgcgtt
     1861 ttgccgttgg catccgcaat ccagacaatg cacggca
//
LOCUS       DATGBK010000165         3569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_210160, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000165 DATGBK010000000
VERSION     DATGBK010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3569
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210160"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /locus_tag="VKJ77_02385"
     CDS             complement(<1..764)
                     /locus_tag="VKJ77_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011350923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HMC44154.1"
                     /translation="MLRFLNSLFGRVVIALVAGIVIGAVFPHFAQTLRPLGDGFLKLI
                     KMVIGPIVFCVVVSGMASAGNLKKVGRVGLKSVIYFEVMTTLALVIGALLAYATRPGV
                     GMNIDLHTLDAGSLATYTEHAKSLKDTAGFLLKIIPDTATDAFAKGDILQVLVFSVLF
                     GAALSLLGEKAQRVTSLIDELSHVFFRIMGFIIKLAPLGVLGAIAFTTGTYGVESLKQ
                     LGMLVIVFYASCFLFVFVVLGVVMRLTGFSIFKLVR"
     gene            1001..1690
                     /locus_tag="VKJ77_02390"
     CDS             1001..1690
                     /locus_tag="VKJ77_02390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HMC44155.1"
                     /translation="MKNLPHTVTDAAIATIRERIETSVYPVGSLLPAQRQLSEELAIS
                     RASLREALSTLEALGMLNIRPGKGVYVNSAEAAGAHAWRFADQASLPDTYQMRFALEG
                     FVARLAAPAIGDADIVWLQDNLDSLQGALTCAELDEAAQLDFAFHMRIVSLAGNTAIE
                     SILRGSADIMKESQRLPFYRRELVLSTYHEHLAIVEALKARDSEHAGRAIEAHIVNAA
                     QRAGVHFPIPV"
     gene            1976..2917
                     /locus_tag="VKJ77_02395"
     CDS             1976..2917
                     /locus_tag="VKJ77_02395"
                     /inference="COORDINATES: protein motif:HMM:NF018184.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC44156.1"
                     /translation="MPPPISRPTSDRHAELIARALAHAESHLDEPLSADTLADCAAMS
                     RHHFHRVFRAYTGCTVANYVTLLRLRRACALLVSGHEPVSDIALTVGYESAQALAKAM
                     RRDLDTTPTAVRRGDVLAWKDIFSRCHEPDSVFIGAAVMQVSRITHLPEGIVALTATG
                     RGMVDNNMMRAAQQAFGELMQVVNGASLRDQVHSYMSVVPDDPKGPDDPHCRFIAGLV
                     FGYSMATGSGQCEQPDGLPLSGTLNWQPIASGRYAVFTHVGPYTTLHRTWKAAYRDWL
                     PSSGEQLRDEPPLEVNLNRPEVTPPEALRTEVWLPLV"
     gene            3149..>3569
                     /locus_tag="VKJ77_02400"
     CDS             3149..>3569
                     /locus_tag="VKJ77_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HMC44157.1"
                     /translation="MIRSHPPAHSDASGDDLHRHIVDAVHEHGWSEQDIFLPPDLTLA
                     LAQECAALAAAGSLTLARVSQGAARSLQPGVRGDWIQWLEAGQSDACDRYLAIMETLR
                     VALNRGLFLNLDEYESHFAFYPPGASYMQHRDRFRHDD"
BASE COUNT          724 a         1069 c         1074 g          702 t
ORIGIN      
        1 taacgcacga gcttgaagat gctgaagccg gtgagccgca tcaccacgcc gagcacaacg
       61 aagacgaaca ggaagcaact ggcgtagaac acgatcacca gcatgccaag ttgcttgagc
      121 gactcgacac cataggtccc ggtcgtgaac gcaatcgcac caagcacgcc gagcggcgcg
      181 agcttgatga tgaaacccat gatgcgaaaa aacacgtgcg acagttcatc gataagactc
      241 gtcacgcgct gcgccttctc gccaagcaac gaaagcgccg cgccgaacag cacggagaac
      301 acgagcacct gcaggatgtc acccttcgcg aaggcatctg tggcggtatc ggggatgatc
      361 ttgagcagga agccggccgt gtctttcagg cttttcgcgt gttcggtgta ggtggcgagc
      421 gaaccggcgt cgagcgtatg cagatcaata ttcatgccta cgcccggccg ggttgcatac
      481 gcgagcaagg cgccgattac gagcgcgagc gtggtcatca cctcgaaata gatcactgac
      541 ttcagcccga cacgcccgac cttcttcaag ttgccggcgc ttgccatgcc agagacgacc
      601 acgcagaaca cgatcggtcc gatcaccatc ttgatgagct tgaggaaacc gtcgccgagc
      661 ggccttagcg tttgcgcgaa atggggaaac accgcgccga tcacaatgcc cgcgaccagc
      721 gcgatcacga cccgcccaaa cagggaatta agaaatctca acacagtggt tctcctcggt
      781 gtcgcacggc acgggatgat gaccatgcta actgttcaga ctggtcggac cagttgctga
      841 tgatgaatat tagaaagccg atatagtgga gtcaagatcc gtttgatacc ggtttacccg
      901 gcttttcagt gcgctttcaa gcgaaaaacc gaatcaaagc agacgcttgg cggtgtcggg
      961 cctacaatgg cggtcagacc gcgccactct taatcgtcct atgaaaaacc ttccgcatac
     1021 cgtgaccgat gccgccatcg cgactattcg tgagcgcata gagacgagcg tttatcccgt
     1081 gggaagtctg ctgccggcgc agcggcagtt gtcggaggaa ctggcaatca gccgcgcctc
     1141 gctgcgtgaa gcgttgtcca cgctcgaagc gctcgggatg ctgaatattc gtcccggcaa
     1201 gggcgtatat gtgaacagcg cggaggcggc cggcgcgcac gcatggcggt tcgccgatca
     1261 ggcgtcgctg cccgatacct accagatgcg cttcgcgctt gaggggtttg tcgcgcggct
     1321 ggcggcgccg gctattggcg atgcagacat cgtctggctg caggacaacc tcgactcgct
     1381 acaaggcgcg ctgacctgcg ccgaactcga cgaagccgca caactcgact tcgcgttcca
     1441 catgcggatc gtgagcctcg cgggtaatac ggcgattgaa tcgatcctgc gcggcagcgc
     1501 cgacatcatg aaagagagcc agcgtttgcc gttttatcgg cgggagctgg tgctgtcgac
     1561 gtaccacgag catctggcca ttgtcgaagc attgaaggcg cgcgatagcg agcatgccgg
     1621 gcgtgcaatt gaagcgcata tcgtgaacgc ggctcagcgg gcgggcgttc attttccgat
     1681 tccggtctag gctggcgcaa cgtattcact ctgtgaaatg atgaagcgaa accgccgtgc
     1741 aggttattca ccgtttatgt tgagaaccct gtggataaca tgtctggcgg cgatctaagc
     1801 gcttgatgca tctcggattt gaggcgttgc ctcgctttgg tcagcggcgc ggcggcggcg
     1861 gaaaatccgc tgggtcacga cttcttccgc gggtataaac gcgccagcgc aaacgacctg
     1921 catcgagcac gatgggacac gtgccgcgcg ggcatcgcct tctacaattg tgttcatgcc
     1981 gccgcctatt tccagaccga catccgatcg ccacgccgag ttgattgccc gtgcgctggc
     2041 tcatgcagag agtcacctcg atgaaccgct gagcgccgac acgctcgccg attgcgcagc
     2101 catgtcgcgc catcattttc atcgggtgtt ccgcgcttat accggctgca ctgtggcgaa
     2161 ctacgtgacc ttgctgcggc ttcgacgcgc ctgtgcgctg ctggtcagcg gccacgaacc
     2221 ggtatcggat attgcgttga cggtgggcta cgagtccgcg caggcgctcg ccaaagcaat
     2281 gcgccgtgat ctcgacacca cgccaacggc tgtccgtcga ggcgatgtcc ttgcgtggaa
     2341 ggacatcttt tcacgctgtc atgaacccga ttctgttttt ataggagccg ccgttatgca
     2401 agtctctcga atcacccact tgcccgaggg cattgtcgcc ctgactgcca cggggcgcgg
     2461 catggtcgac aacaacatga tgcgtgccgc gcaacaagcg tttggcgagc tgatgcaggt
     2521 ggtgaatggt gcgagccttc gcgatcaggt gcacagttat atgagcgtgg ttcctgacga
     2581 ccccaaaggt cctgacgatc cgcactgccg ttttatcgct ggcctggtgt tcggttattc
     2641 gatggcaaca ggcagcgggc agtgcgagca accggacggc ctgccgcttt ccggcacgct
     2701 gaactggcaa ccgatcgcga gcggccgtta tgcggttttt acccacgtcg gtccttatac
     2761 gacgttgcat cgcacgtgga aggcggcgta tcgggactgg ctgccgtcct ccggcgaaca
     2821 gcttcgcgac gaaccgccac tggaggtcaa cctgaaccgg cccgaagtca ctcctccgga
     2881 agcgcttcgg acggaagtgt ggttgccgtt ggtgtaggag tcaggcatta gcacggtgct
     2941 cgcgggtggc tgaacgagac gacgcgctgg taaaccgggc cagagcgtca cgagctcccg
     3001 tcacgggaac agtcaggcgc cggtgttaaa atctgccact cagattaaag ccccatcccg
     3061 ccgatatccg atacccgctt gatccatagc ctcgtatcgg acgaccgccc gaatctccat
     3121 ccagcacctt cgttcgaagg aacccgcagt gatccgatcg cacccgccgg cgcattccga
     3181 tgcgtccgga gatgacctgc atcgtcatat tgtcgatgcc gttcatgagc atggctggtc
     3241 ggagcaggac attttcttgc cgccggatct gaccctcgcg ctggcgcagg aatgcgctgc
     3301 gctcgcggca gccggctcgc ttaccctggc gcgcgtcagt cagggcgcgg cgcgatctct
     3361 gcagcccggc gtgcgtggcg actggatcca gtggctggag gcgggtcagt cggacgcctg
     3421 cgaccgctat ctcgcgatca tggaaacatt gcgcgttgcg ttgaatcgcg gcctgttctt
     3481 gaatctcgat gaatacgaaa gccactttgc gttctacccg ccgggcgctt cgtacatgca
     3541 gcaccgcgac cgatttcgcc acgacgaca
//
LOCUS       DATGBK010000166         1554 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_140981, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000166 DATGBK010000000
VERSION     DATGBK010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140981"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..333)
                     /locus_tag="VKJ77_02405"
     CDS             complement(<1..333)
                     /locus_tag="VKJ77_02405"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC44158.1"
                     /translation="MTTSQQADRRADVIVIGGGIMGTTTAFFLRRRNPACSVIVLERG
                     LTGQQASGVNFGGVRRQGRALSQLAMANRSLNTWQHSKELLGEDIEFLPSGHTRVCYH
                     PQDADTFDR"
     gene            complement(330..>1554)
                     /locus_tag="VKJ77_02410"
     CDS             complement(330..>1554)
                     /locus_tag="VKJ77_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013341796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HMC44159.1"
                     /translation="SYETLYGTESARAAALHQSFDALKSRIDYLSETLVWNISANAVH
                     LVSGTSYRTLEFDALIICSGATDRLMPVKGWHYAGTYSLGGAQVALKSQGCSIGSRVV
                     LMGTGPLLYLVAAQYVKAGAAVSAVFDTSTLLQRLSALPKLLAIPAALKKGIALMGVL
                     RKAQVRVYRGVRPLEISGSPEHGVSHVEVALQSGMPFKVACDAVALGYHLRPETQLAD
                     LAGCDFSFDDAAQQWLPATDEDGRSSVKGVYLAGDGARIRGADAAERSGRLAALAAMQ
                     DGGLKVEGLVALREQLRVFSRFAAGLRAAFPWPARFASMLPDETIVCRCEAITAGELR
                     RVVRETGAQEANRAKAFSRVGMGRCQGRFCAHAGAEVIAAAASVPLASVGRLRGQAPV
                     KPLPVTLVEEEGATE"
BASE COUNT          299 a          508 c          472 g          275 t
ORIGIN      
        1 gcggtcgaag gtatccgcat cttgcgggtg ataacagacc cgggtatgcc ccgagggcag
       61 gaattcgatg tcctcgccca acagttcttt tgagtgctgc cacgtattaa gcgagcggtt
      121 cgccatcgcg agttgagaca gggcacggcc ttgcctgcgc acaccaccaa agttgacccc
      181 gctcgcttgc tggcccgtca ggccacgctc gagcacgatc acggaacaag cagggttgcg
      241 gcgacgcagg aagaacgcag tggtcgtgcc catgatgccg ccgccgatca cgatcacgtc
      301 ggcccgacga tcggcttgtt gtgacgtcgt cattccgtgg ccccctcttc ctctaccagc
      361 gtcaccggca acggtttgac gggtgcttgc ccacgtagtc gtccaacgga agccagcggt
      421 acggaggccg cggccgcgat cacttcggca cctgcatgag cgcagaagcg gccctgacac
      481 cggcccatgc ccacgcgcga aaatgccttt gcacgattcg cttcctgcgc gccggtttcg
      541 cgcaccacgc gacgcaattc gcctgcggta atggcttcgc aacgacagac aatagtttcg
      601 tccggcagca tgctcgcgaa gcgggccggc catggaaagg ccgcacgcaa gccggccgcg
      661 aagcggctga agacccgcag ttgttcgcgc aaggccacca gcccttcgac cttcaaaccg
      721 ccgtcctgca tcgcagcgag tgcggccaga cggcccgatc gttctgcggc atcggcgcca
      781 cggatacgcg caccgtcgcc cgccagatag acgcccttga cgctgctccg gccgtcttca
      841 tcggtggcgg gaagccattg ctgcgcggcg tcatcgaaag aaaaatcgca gccggccaga
      901 tcggcaagct gcgtttcggg gcgcaagtga taccccagcg caactgcatc gcaggccacc
      961 ttgaagggca tgccgctctg cagcgcgact tcaacgtggc tcacgccgtg ctccggtgaa
     1021 ccgcttattt ccagtggtcg cacgccgcgg tatacccgca cctgcgcttt ccttagcact
     1081 cccatcaaag cgatgccttt tttcagcgcg gcgggaatgg cgaggagctt gggcaacgcg
     1141 ctgagtcgtt gtaaaagcgt ggaggtatcg aagacggcgg acactgccgc gcccgctttc
     1201 acatactgtg cagcgacgag gtaaagcagc gggcctgtac ccatcagcac gactcgcgaa
     1261 ccgatcgagc acccttgcga cttcagcgcg acttgcgcgc cgcccaggct ataggtgccg
     1321 gcgtaatgcc agcctttgac cggcatcagc cggtccgttg cgccgctgca aatgatcagc
     1381 gcatcgaatt cgagtgtacg gtaggaggtg ccactgacaa gatgcacagc attcgccgag
     1441 atgttccaga cgagcgtttc agacaagtag tcgatgcggc tcttgagcgc gtcgaagctc
     1501 tgatgcagcg cggccgcgcg cgcactttcg gtgccgtaga gcgtctcata ggaa
//
LOCUS       DATGBK010000167         3512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_325999, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000167 DATGBK010000000
VERSION     DATGBK010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_325999"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(406..759)
                     /locus_tag="VKJ77_02415"
     CDS             complement(406..759)
                     /locus_tag="VKJ77_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HMC44160.1"
                     /translation="MDGMDDGIDPALIAILAQLWRAAQETPGRAWSLAKLSKQSGVPM
                     SSLIRHLTALSDAALLDPANPDDPHANGENTANAPTAALSEAGRELCAQLFAQSPPRS
                     TNPERSCVFTSAIGW"
     gene            complement(777..2207)
                     /locus_tag="VKJ77_02420"
     CDS             complement(777..2207)
                     /locus_tag="VKJ77_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HMC44161.1"
                     /translation="MTLYEKLAAEIEEAVRRGVFAVGERVPSVRQASVQHGVSIKTVL
                     HAYALLESRGVLETRPQSGYFVRELPVAPVVSQVASQPPPVASKVDVSRLVLSTLRSI
                     RSHDATPLGSPYPDPSLFPWRRINQLANAIARRHSSWNLMDDLPPGNPELIRQIARRY
                     AENGVPVDPDEIVITVGATEAINLSLQAVAKPGDTVAVESPTYYAMLHAIERLGMRAI
                     EVPTHPAEGIDIDALAVIIREHRIAACMVMPNFQNPLGFVMSDANKERLVGLLAAHEI
                     PVIENDVYQELYYGEARPSALKNFDKKGLVLHCASFSKSLTASYRIGWAMPGRYRREV
                     EKLKFLNTLTTPSVPQVAVADYLRQGGYDRHLRHVRKVYQQQARLMIAMVTRFFPPGT
                     QMSMPMGGYVLWVQLPGNVDSMQLYETALALGITIGPGTMFSSRDAFRHFVRLNYSYP
                     WSAQTEAAVKTLGELVAGMAREKIRD"
     gene            2369..>3512
                     /locus_tag="VKJ77_02425"
     CDS             2369..>3512
                     /locus_tag="VKJ77_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HMC44162.1"
                     /translation="MKKPEPRIEPYTHPAAGWGALKYVALNLLKEKVSGGNYRTLFGQ
                     NQPDGFDCPGCAWPDREHASTFEFCENGVKAVAAESTSKRVTPAFFEEHTVEQLMAQS
                     DYELEQHGRLTDPLVYDAARDRYVPIAWDDAFALIADHLNRLDDPDRAAFYTSGRASN
                     EAAFLYQLFVRMYGTNNFPDCSNMCHEATSRGLPGTVGVGKGTVTLEDFEHADTLLLF
                     GQNPATNHPRMLGELRECAKRGATIVSINPLRERGLERFASPQHPVEMLTGGSTKISS
                     VFIRPKIGGDFALIKGVAKHVIELDDAAHAQGLPRVLDIGFIAEHTVGFDAFAEDLRA
                     ESWDAIVSESGVPKDEVLQLADIYARGRAVISTWGMGLTQHKNSVPT"
BASE COUNT          730 a         1045 c         1017 g          720 t
ORIGIN      
        1 gggtgcctat cttgaagtta ctcaaattca tctcatgctc cagtgtgatc aacaatgaac
       61 acgattacgg agcattcgcg atttcctgaa acaacctttc aatttcccgc gttgcctcga
      121 aaacatatga agaataagaa gtttttgtaa gttattgaat ttaatcagta atttttgaag
      181 cgattgggcc gcggtggctc tcggatactt aagctttcgg taaaaataac atcttcaact
      241 ataaaaatag gaaacaactg gcgatttcaa ccctaaactg tcgatttatg agtattttct
      301 acttaatcaa acaccacata aaataattcg atgttcctta caatggctta ccatttgcac
      361 cgctggaaac gcaataacgc gcgtgatatt gcgaccgatc gcaaattacc agccaatagc
      421 actcgtgaaa acgcacgatc gctcaggatt tgtcgatcgc gggggtgatt gggcgaataa
      481 ttgtgcgcat agttcgcggc ccgcttcgct cagcgcggcc gtgggtgcat tagctgtgtt
      541 ttctccattc gcatgcgggt catccggatt ggccgggtcc aataacgccg cgtccgacag
      601 cgcggtcagg tgacgaatca ggctgctcat cggcacaccc gattgtttcg ataacttcgc
      661 gagcgaccac gcccgcccgg gtgtctcctg cgccgcgcgc cataactgcg cgaggatcgc
      721 gatcagtgcc gggtcgatcc catcgtccat gccgtccatg ttttttgtcc ccgtctttag
      781 tctctgattt tctcgcgcgc catgccggcg accagttcgc ccagtgtctt caccgccgct
      841 tccgtctgcg cgctccacgg ataactgtag ttgagccgga cgaaatgacg gaaggcatcg
      901 cgcgatgaaa acatcgtgcc cggtccgatc gtaatcccga gcgcaagcgc ggtttcatag
      961 agttgcatcg agtcgacatt gccgggtaac tggacccaca gcacatagcc gcccatgggc
     1021 atggacattt gcgtgccggg gggaaagaag cgcgtgacca tcgcgatcat gagccgtgcc
     1081 tgctgctggt acaccttacg cacatgccgc agatgacggt cataaccgcc ctgccgcaaa
     1141 tagtcggcca ccgcgacctg cggcaccgaa ggcgtggtca gcgtgttcag gaacttgagt
     1201 ttttccacct cgcggcgata gcgcccaggc atcgcccagc cgatccggta agacgccgtc
     1261 aggctcttcg aaaacgacgc gcaatgcagc acaaggccct ttttatcgaa gttcttaagc
     1321 gcggacggac gagcttcgcc gtagtacaac tcctgataca catcgttttc gatcaccggg
     1381 atttcgtgcg cggcgagcag gccgacaagc cgttccttgt tcgcgtccga catcacaaag
     1441 cccaagggat tctggaagtt cggcatgacc atgcatgcgg cgatccggtg ttcgcggatg
     1501 atgaccgcga gtgcgtcgat gtcgatgcct tcggccggat gcgtcggcac ttcgatcgcc
     1561 cgcatgccaa ggcgctcgat tgcgtggagc atcgcgtaat aggtcggcga ttcgaccgcg
     1621 acggtgtcgc ccggtttcgc caccgcctgc aggctcaggt tgatggcctc ggtagcaccg
     1681 acggtgatga cgatctcgtc ggggtcgacg ggcacgccgt tctccgcata acgccgcgca
     1741 atctggcgga tcagttcggg gttgcccggc ggcaggtcgt ccatcaggtt ccagcttgaa
     1801 tgccgccgcg caatggcgtt cgccaactgg ttaatgcgac gccagggaaa cagcgatgga
     1861 tccggataag gcgaccccag cggcgtggcg tcatgcgagc ggatggagcg aagcgtggac
     1921 aagaccaggc ggctgacatc gacttttgat gcgactggcg gtggctgcga ggcgacttgg
     1981 ctgaccactg gcgccacagg cagttcgcgc acgaagtagc ccgactgcgg gcgcgtctcc
     2041 agcacgcccc ggctttccag cagcgcgtac gcgtgcagga ccgtcttgat gctgacgcca
     2101 tgctggacgc tcgcctgtcg taccgacggc acacgctcgc ccacggcgaa cacgccgcgt
     2161 cgtacggctt cctcgatctc agccgccagt ttttcgtaga gcgtcacgtt ggttgaatga
     2221 gcaaaaggag tggacgggac gggcacgagg cctccgaagc cccaaactgt actcctcgtc
     2281 tatctgtttt tctgtatacc gcgtcatttt cggaacacag tagccttgcg tcattggtga
     2341 aaaccctcaa gaatccgcgg caggcactgt gaaaaaaccc gaacctcgca ttgaacccta
     2401 tacacaccct gcagccggct ggggcgcgct caagtatgtg gccctcaatc tcctcaagga
     2461 gaaggtgtcg ggcggaaatt accgcacgct gttcggccag aaccagccgg acggtttcga
     2521 ttgccccggc tgcgcctggc cggatcgcga acatgcttcc acgttcgaat tctgcgaaaa
     2581 cggcgtgaaa gccgtggcgg ccgagtccac cagcaagcgt gtcacgccag cattcttcga
     2641 agaacacacc gtcgaacagt tgatggcgca gtcggattac gagcttgaac agcatggccg
     2701 cctgaccgat ccgcttgtct acgacgccgc ccgcgaccgc tacgtgccca ttgcgtggga
     2761 cgacgcgttc gcgctgatcg cggaccatct gaatcgcctc gatgaccccg atcgtgccgc
     2821 gttctatacc tcgggccgcg cgagcaacga agccgcgttc ctgtaccaat tgttcgtgcg
     2881 catgtacggc actaacaact tcccggactg ctcgaacatg tgccacgaag ccacgagccg
     2941 gggtttgccg ggaaccgtgg gcgtgggcaa gggaaccgtg acgctcgagg atttcgagca
     3001 cgcggatacc ctgctgctct tcggccagaa tccggcgacg aaccatccgc ggatgctggg
     3061 agaactgcgc gaatgcgcga agcgcggtgc cacgatcgtc tcgatcaacc cgctgcgtga
     3121 acgcggtctc gaacgcttcg cgagtccgca gcatccggtc gagatgctca cgggcggcag
     3181 cacgaaaatc agttcagtgt tcatccgtcc aaaaattggc ggggattttg cgttgatcaa
     3241 aggcgtggcg aaacacgtga tcgaactgga cgatgcagcg cacgcgcaag gcttgccgcg
     3301 cgtgctcgat atcggcttta tcgccgagca tacggttggt ttcgacgcgt tcgccgagga
     3361 cctgcgcgcc gaaagctggg atgcgatcgt ctcggaatcg ggcgtgccga aagatgaagt
     3421 cctgcaactc gccgatatct acgcgcgggg ccgtgccgtc atctcgacgt ggggcatggg
     3481 tcttacccag cacaagaact cagtgccgac cg
//
LOCUS       DATGBK010000168         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_326011, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000168 DATGBK010000000
VERSION     DATGBK010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326011"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VKJ77_02430"
     CDS             complement(<1..218)
                     /locus_tag="VKJ77_02430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44163.1"
                     /translation="MTKSMPADTRQGLNALYRGKALRMSRRSVGAIAVLLLSVSFVSM
                     NASAQNGNAVAPARAGSDGAATAASLPDP"
     gene            complement(263..817)
                     /locus_tag="VKJ77_02435"
     CDS             complement(263..817)
                     /locus_tag="VKJ77_02435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HMC44164.1"
                     /translation="MADSLKGYKVAILAVDGFEQAELVEPQKALKAAGAQVHVISQKP
                     GQIQGFVHTDKGDKVTVDATFDQTHASDYDAVVLPGGVVNGDAIRVDAKAQNIVKQFD
                     KDGKPIAVICHGGWLPISAGIVSGRTLTSWPTLQDDIRNAGGTWVDEEVHRDRNLITS
                     RKPDDLPAFNKVIIEALSERKKAA"
     gene            complement(946..>2052)
                     /locus_tag="VKJ77_02440"
     CDS             complement(946..>2052)
                     /locus_tag="VKJ77_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44165.1"
                     /translation="LFTIASFGCALSGSLTSLAIAPVIQGFGAAGIMSVNTALVRMIY
                     PTEHLGRGVSINASVVAISSVIGPTVASGVLAIAPWPWLFAINVPIGIAAFAVGWKAL
                     PRTPGHRQPYDYLSALMNAAVFGLAITAVDGLGHGEHRSYVLAEFLVAGVIGYFFVRR
                     QLTQPAPLLPIDLLRIPVFALSIVTSFCSFTAQMLAFVSLPFLMQNTFGMSQVLTGFL
                     MTPWPLVIVFIAPLAGMLSDRYSAGMLGGIGLAIMTLGLLLLATTGAHPAPVDIAWRM
                     AVCGLGFGLFQSPNNRQMLSSAPRHRSGGASGMLGTARLSGQTLGAALVALIFGIAPQ
                     HGTTITLVVAAGFAAAAAMVSLMRISRSKTPATA"
BASE COUNT          412 a          638 c          639 g          363 t
ORIGIN      
        1 gggtccggca acgacgcagc cgtcgccgcc ccgtcggacc ccgcgcgtgc cggcgctacc
       61 gcattaccgt tttgcgcgct tgcgttcatc gacacaaaac tgacgctcaa cagcagcacg
      121 gcgatcgcgc caacgctgcg ccgcgacatg cgtagtgcct tcccacgata caaagcgttc
      181 aaaccctggc gagtatctgc cggcatcgat tttgtcattc ggttctccac tgccaattga
      241 aaacgatctg gactcccgcc actcaagccg ctttctttcg ctcgctgagc gcttcgatga
      301 tgactttgtt gaacgcgggg agatcatcgg gcttgcggct cgtgatgaga ttgcgatcgc
      361 gatgcacctc ttcatcgacc catgtaccgc cggcattgcg gatatcgtct tgcagcgtcg
      421 gccagctcgt cagcgtgcgg cctgacacaa tgcccgccga gatcggcagc catcctccgt
      481 ggcagatcac ggcgatgggt ttgccgtcct tatcgaattg cttcacgatg ttttgcgcct
      541 tcgcatcgac gcggattgcg tcgccgttga ctacgccgcc gggcaatacg accgcgtcgt
      601 aatcggatgc gtgcgtctga tcgaaggtgg cgtcgaccgt gaccttgtcg cccttgtcgg
      661 tgtgtacgaa gccctggatc tgtcccggct tttgcgagat cacatggact tgggcaccgg
      721 ctgctttcag cgccttttgc ggttcgacaa gttcggcttg ttcgaagcca tcgacagcga
      781 gaatcgcgac cttgtaaccc ttgagggaat cagccatgaa ataagctcct tggtgcattg
      841 aacgaaccgg ccccggtgta cggaaccacg ttcgttcaat tcagcaaagg gtgtgcctac
      901 aaggttgtaa tacaggactt tatgacagga atggacaggc tggcttcagg cggtcgcggg
      961 cgtcttgctg cgcgaaatgc gcatcaggct gaccatggcc gcggctgctg caaagcccgc
     1021 agcgacgacc agcgtaatgg tcgtgccgtg ctgcggcgca atgccgaaga tcagcgcgac
     1081 gagcgccgcg ccgagcgtct gtcctgagag tcgcgctgtg ccgagcatgc cgcttgcgcc
     1141 gccgctgcga tgacgcggcg ccgacgacag catctggcga ttgttgggcg actggaacaa
     1201 accgaagccc aggccgcaca ccgccatgcg ccacgcaatg tcgaccggcg ccgggtgtgc
     1261 tccggtcgtc gcgagcagca gcaagccgag cgtcatgatg gccagtccga tgccgccgag
     1321 catccccgct gaatatcggt cggacagcat gccggcgagt ggcgcgatga atacgatcac
     1381 cagcggccac ggcgtcatca gaaagccagt caggacctgg ctcatgccaa aggtgttctg
     1441 catgaggaac ggcagcgaga cgaaggccag catctgcgcg gtgaacgagc aaaaggacgt
     1501 aacaatggac agcgcgaaca ccgggattcg cagcagatcg ataggcaaaa gcggcgcggg
     1561 ttgcgtcagt tgccgccgta cgaaaaagta tccgatcacg ccggccacga gaaactcggc
     1621 gagcacgtac gaacgatgtt ctccgtggcc gagcccatcg acagcggtga tcgcgaggcc
     1681 gaacaccgcc gcgttcatca gcgcgctgag atagtcgtag ggctgccggt gccccggcgt
     1741 gcgcggcaac gccttccagc cgaccgcgaa cgcagcgatg ccgatcggca cgttgatcgc
     1801 aaagagccac ggccacggtg cgatcgcgag aacgccggaa gcaaccgtgg gccctatgac
     1861 cgacgagata gccactacgg aggcgttgat gctgacgccg cggccgagat gctccgtggg
     1921 atagatcatg cgcaccaggg ccgtgttgac gctcatgatg cccgccgcgc cgaacccttg
     1981 aatcaccggg gcaatggcaa gcgacgtcag cgacccggag agcgcgcagc cgaacgacgc
     2041 gatcgtgaac ag
//
LOCUS       DATGBK010000169         2631 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_94637, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000169 DATGBK010000000
VERSION     DATGBK010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2631
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94637"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..790
                     /gene="proB"
                     /locus_tag="VKJ77_02445"
     CDS             <1..790
                     /gene="proB"
                     /locus_tag="VKJ77_02445"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HMC44166.1"
                     /translation="DLADRERYLNARSTLTTLLRLGVVPIINENDTVVTDEIKFGDND
                     TLAALVTNLIEADCLIILTDQAGLYTRDPREDPMAELVREAKAGAPQLEDMCGKAGSH
                     IAKGGMLTKVLAAKRAARSGAHTVIASGHEPDVLLRLAEGEAIGTQLVAETMPIAARK
                     QWLADHLQVNGSLLLDAGAMRALIKDGKSLLPIGVKSIEGAFERGAVVACLSPEGKEL
                     ARGLVNYGANEARRILGKPSSEILSVLGYVDEPELIHRDNLVLL"
     gene            complement(950..1471)
                     /locus_tag="VKJ77_02450"
     CDS             complement(950..1471)
                     /locus_tag="VKJ77_02450"
                     /inference="COORDINATES: protein motif:HMM:NF020331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNP1-like family protein"
                     /protein_id="HMC44167.1"
                     /translation="MRAWIALGLILPLVAWAQVVGADGNFGDAGREDEAQAPRPEYPK
                     PENYLPLQVSGTTPFVFFVDAKSVSVGKDGVVRYSLIAKSSDGALNVSFEGIRCSEHK
                     FRIYAFGRPDNTWSEARSSLWQVMPADSRNAQRAVLYSDFFCPAGGIIHTPEEGVQAL
                     RSGRHPRATISGY"
     gene            complement(1477..2073)
                     /locus_tag="VKJ77_02455"
     CDS             complement(1477..2073)
                     /locus_tag="VKJ77_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006027958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3501 family protein"
                     /protein_id="HMC44168.1"
                     /translation="MQKTKHKIARDSLLSLEVYAAQRKEFRARVMAHKRNRTVHLGAH
                     VTLIFEDELTLRYQVQEMLRIERTFEEQGIQDELDAYNPLIPDGRNLKATMMIEYVDE
                     EERKQALSKLKRIEDRVWVQVEGCTRVHAIADEDLARENEEKTSAVHFLRFELNDEMA
                     RALKYGVGLALGVDHPNYQSEVGAVAAGVRASLIQDLD"
     gene            complement(2090..>2631)
                     /locus_tag="VKJ77_02460"
     CDS             complement(2090..>2631)
                     /locus_tag="VKJ77_02460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004190664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HMC44169.1"
                     /translation="IPPLARLAREGYAILTAVPSCTLMFKSELPLLFPGDAEVEAVAA
                     AMFDPFEYLVLRHKDGLLKTDFKQPLGKVSYHIPCHSRVQNMGQKTREVLQLVPQTTV
                     NTVERCSGHDGTWGVKSEYYANSMKIGRPVFKAMAASDPDYISSDCAIAARHIQQGMG
                     ETRAQREHPLTLLRIAYGL"
BASE COUNT          489 a          832 c          805 g          505 t
ORIGIN      
        1 cgacctggcc gaccgcgagc gctatctgaa cgcgcgttcg accctgacca ccttgctgcg
       61 cctgggcgtg gtcccgatca tcaacgagaa cgacaccgtg gtcacagacg agatcaagtt
      121 cggcgacaac gacaccctgg cggctctggt gaccaacctg atcgaggcgg attgtctgat
      181 cattcttacc gaccaggctg gcctgtatac gcgcgacccg cgcgaagatc ccatggccga
      241 attggtgcgc gaagccaaag ccggggcgcc gcaactggag gacatgtgtg gaaaagcggg
      301 cagccacatc gccaagggcg gcatgctgac caaggtcctc gccgcaaaac gcgcggcgcg
      361 ctcgggcgcg cataccgtaa tcgcctccgg gcacgagccg gacgtgctgc tgcggcttgc
      421 cgagggcgaa gcaatcggca cgcaacttgt tgccgaaacg atgccgatcg ccgcacgcaa
      481 gcagtggctg gccgatcatt tgcaggtcaa cggcagcctg cttctggacg ccggcgcgat
      541 gcgcgcgctg atcaaggacg gcaagagcct gttgcccatc ggggtgaaga gcattgaagg
      601 cgcgttcgag cgcggcgcgg tggttgcctg cctctcgccc gaaggcaagg aacttgcgcg
      661 cgggctggtg aactacggcg ccaacgaagc acgccgcatt ctgggtaagc cgagcagcga
      721 aatcctgtcc gttcttggct atgtggacga gcccgaactg atacacaggg acaacttggt
      781 cctgctttag cgggatcagc ttgcggcgcg ggttgatatt cgcgcagcga atatgaggcc
      841 gcgcggaggc ggccgggact gcaattgcgc agggcggcgc agacacattc tgcgcaagcg
      901 ggcgttcgaa cctctatctc gccatctcgg gtgttcgtgg ggggaaattt caatagcctg
      961 aaatagtcgc ccgcgggtgt ctgccagatc tgagcgcctg cactccctct tcgggtgtat
     1021 ggatgatgcc gcctgcggga cagaagaaat cgctgtacag caccgcccgc tgggcgttgc
     1081 gggagtctgc cggcattacc tgccatagag aactgcgcgc ctcggaccag gtattgtcgg
     1141 gccggccgaa cgcgtagatg cggaatttgt gctcggaaca gcgtataccc tcgaagctga
     1201 cgttgagtgc gccatcggag cttttcgcga tcaagctgta tcgcaccacc ccgtccttgc
     1261 cgacgctgac ggatttcgcg tcaacaaaaa agacgaacgg cgtcgtccca ctcacctgca
     1321 gcggcaggta attctcgggc ttcgggtatt cgggacgcgg cgcctgcgcc tcgtcctcgc
     1381 ggccggcatc accaaaattg ccgtcggcac cgaccacctg tgcccaggcc acaagcggca
     1441 gtatcagccc cagtgcaatc caggcgcgca tatggatcag tccaggtctt ggatcagcga
     1501 ggcccgcacg cccgcggcga cggcgccgac ctcggattga tagttcgggt ggtctacgcc
     1561 gagcgccaaa cctacgccgt acttcagcgc ccgtgccatc tcatcgttca gttcgaagcg
     1621 caggaagtgc acggcggagg tcttttcctc gttctcgcgc gccagatctt cgtcggcaat
     1681 ggcatggacc cgggtgcagc cctccacctg aacccagacc cggtcttcga tccgcttcaa
     1741 cttcgacagc gcctgcttgc gttcctcttc atccacatat tcaatcatca tggtcgcctt
     1801 gagattgcgc ccgtccggga tcaggggatt gtacgcatcg agctcgtcct gtatgccctg
     1861 ctcctcgaac gtgcgttcga tgcgcagcat ttcctggact tgatagcgga gcgtgagctc
     1921 gtcctcgaat atgagcgtca cgtgcgcgcc cagatgaacc gtgcgatttc tcttgtgcgc
     1981 catgaccctg gcccggaatt ccttgcgctg cgcggcataa acctcaagac tgagcaggct
     2041 gtccctcgcg atcttgtgct tggtcttctg cattgcgttc atatcccttt cacagcccgt
     2101 aggcgatgcg cagcaaagtc agcggatgct ctctctgcgc tctggtttcc cccatcccct
     2161 gctgaatgtg gcgcgccgcg atagcgcagt cggaactgat gtaatccggg tcgcttgcgg
     2221 ccatggcttt aaaaaccggg cggccgattt tcatcgagtt ggcgtagtac tccgacttca
     2281 cgccccaggt gccgtcgtgc cccgagcaac gctccaccgt gtttaccgtg gtctgcggca
     2341 ccagttgcaa cacctcgcgc gtcttctgcc ccatgttctg cacccgcgaa tggcagggga
     2401 tatggtagga gaccttcccc agcggctgct tgaaatccgt cttgagcaga ccatccttgt
     2461 gccgcaggac gagatactcg aaaggatcga acatcgccgc ggccactgcc tccacctcgg
     2521 catcgccggg gaacagcagc ggcaactccg acttgaacat aagggtgcag gagggcaccg
     2581 cggtgaggat ggcgtagccc tcgcgcgcaa gccgggccag cggcgggatg t
//
LOCUS       DATGBK010000170         1587 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_117874, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000170 DATGBK010000000
VERSION     DATGBK010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117874"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..749)
                     /locus_tag="VKJ77_02465"
     CDS             complement(<1..749)
                     /locus_tag="VKJ77_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018441374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HMC44170.1"
                     /translation="MQSPADSKRLRTNPLSKAWAFASKEPVLAILVVALIALQVLHPK
                     PWASLPALIDWQTVLTLAGLLMLTKAVELSGFLMWMAHRVVHRIHGERGLAFLLIGLA
                     AVLSTLLTNDVALFAVVPLTLSLHKLAPLPIKRLVIFIAIAVNAGSILTPLGNPQNLF
                     LWQTSGVSFGRFVWTLLPLCAALMAMLYALAAVMFHNRPLDLSGDTEARSVDIPLCTV
                     AGIAFIAFVVLADAHYAGIGLAAIAVGFLLWR"
     gene            complement(756..>1587)
                     /locus_tag="VKJ77_02470"
     CDS             complement(756..>1587)
                     /locus_tag="VKJ77_02470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HMC44171.1"
                     /translation="PNFLRLDSMEAGKYQPRTRMDEGALQELAASIRAQGVMQPILVR
                     SIGDDRYEIIAGERRFRAAKLAGLDEVPVLVKNVPDQAAAAMALIENIQREDLNPLEE
                     AQGIQRLLDEFDFTHEQAAESVGRSRSAVSNLLRLLNLATPVQTMLLAGDLDMGHARA
                     LLAVDAATQIQLANQVVNKRMSVRETEKLVSSTTKEAPATKARIANDGGRDTRRLEEE
                     LSDLLSANVKIKMGGRGRGKLQIDFGDLDALEGILGRLRTGAVNGKPATADNTSAVQA
                     "
BASE COUNT          322 a          496 c          478 g          291 t
ORIGIN      
        1 cgccacaaca ggaaacccac tgcgatggcg gccaagccga tgccggcgta atgggcatcg
       61 gcgagaacca cgaacgctat gaacgcaatg cccgctaccg tgcagagcgg gatatcgacg
      121 gaacgcgctt cggtatcgcc ggaaagatct agtggcctgt tgtggaacat cactgcagcc
      181 agcgcgtaaa gcatcgccat gagcgccgcg cacaacggca gcaatgtcca cacgaacctg
      241 ccgaaagaca caccgctcgt ctgccagaga aacaggttct gcgggttgcc gagcggcgtc
      301 aggatcgatc cggcattcac agcgatcgcg atgaagataa ccaacctctt gatggggagt
      361 ggggcgagtt tgtgcaacga cagggtcaac ggtacgacgg cgaacagtgc gacgtcgttg
      421 gtgagcaagg tcgagagcac tgcggcaaga ccgatcagca gaaacgccag gccgcgttca
      481 ccgtgaatcc gatgcacaac gcggtgcgcc atccacatga ggaagcccga caactccact
      541 gccttggtca acatcagcaa gccggcaagc gtcagcacgg tctgccagtc gatcaaagcg
      601 ggtaacgacg cccacggctt gggatgcagg acttgcagcg cgatgagcgc gaccaccagg
      661 atcgcgagca cgggttcttt gcttgcgaaa gcccaggctt tcgacaaggg attcgttcgt
      721 aagcgtttgg agtccgcggg cgactgcatc gcggcttatg cctgcactgc ggatgtattg
      781 tccgcggttg ccggtttgcc gttaacggcg ccggtgcgca gccgtcccag gatgccttca
      841 agcgcatcga gatcgccgaa atcgatctgc aacttcccgc gccctcgccc gcccatcttg
      901 atcttcacat tcgccgacag caggtcggac aattcctctt ccagccggcg cgtgtcgcgg
      961 ccaccatcgt tagcgatgcg cgcttttgtc gcaggcgctt ccttggtcgt cgatgaaacc
     1021 agcttctcgg tctcacgcac cgacatgcgc ttgttgacca cctggttggc caactggatc
     1081 tgcgtggcag cgtcgacggc gagcagcgcg cgcgcgtggc ccatgtcgag atcgcccgcg
     1141 agcagcatgg tttgaaccgg cgtagccagg ttcagcaggc gcagcaaatt cgatacggca
     1201 ctacgcgaac gcccgaccga ttcggccgct tgctcgtgcg tgaaatcgaa ttcatcgagc
     1261 aaacgctgga tgccctgtgc ctcttccaac ggattcaaat cctcgcgctg gatgttttcg
     1321 atcagcgcca tggccgcagc agcctgatcc ggcacgtttt tcacgagcac cggcacttcg
     1381 tccaggccag cgagttttgc cgcccggaag cgccgctcgc cggcaatgat ttcgtaccgg
     1441 tcgtcgccaa tggaacgcac gaggatcggc tgcatcacac cctgcgcccg gatgctggcc
     1501 gcgagttcct gtagcgcgcc ttcgtccatt cgtgtgcgcg gctgatactt gccggcttcc
     1561 atggagtcaa ggcgtagaaa gttcggc
//
LOCUS       DATGBK010000171         1588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_141036, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000171 DATGBK010000000
VERSION     DATGBK010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141036"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..295)
                     /locus_tag="VKJ77_02475"
     CDS             complement(<1..295)
                     /locus_tag="VKJ77_02475"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004533677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033958 - DNA-deoxyinosine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HMC44172.1"
                     /translation="MLKGFPPIADDNTHTLILGSFPGIASLDAAQYYAHPRNQFWRLV
                     GTVIDEPLNELPYDERVLKLLAHGIGLWDVLAACEREGSLDTAIRNANPNDFAS"
     gene            complement(310..858)
                     /locus_tag="VKJ77_02480"
                     /pseudo
     CDS             complement(310..858)
                     /locus_tag="VKJ77_02480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088829.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008813 - chorismate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
     gene            1015..1272
                     /locus_tag="VKJ77_02485"
     CDS             1015..1272
                     /locus_tag="VKJ77_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44173.1"
                     /translation="MSVNTKQTSKVVATLASHTLHDPKASVIAKSLAASALSQTHTKN
                     QTGAEMEHKAGQVLHSDKYSKDTKTLAASVVAQANKERRAK"
     gene            complement(1370..>1588)
                     /locus_tag="VKJ77_02490"
     CDS             complement(1370..>1588)
                     /locus_tag="VKJ77_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010102343.1"
                     /note="molecular chaperone; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HMC44174.1"
                     /translation="RMLKQAGQAAPQMQPILEVNPEHPLVKQLHADDANFGDWCHLLF
                     DQAMLAEGGTLEDPASFVKRTNALLLAR"
BASE COUNT          356 a          468 c          465 g          299 t
ORIGIN      
        1 acgatgcgaa atcgttgggg ttggcgttgc ggattgcggt gtcgagactg ccttcgcgct
       61 cgcaggccgc aagcacgtcc cataagccga tgccatgtgc tagtagcttg agcacgcgtt
      121 catcgtaggg aagctcgttt aaaggctcat cgataaccgt acctaccagc cgccagaact
      181 ggttacgtgg atgcgcgtag tactgcgcgg catcgagcga cgctatgccc gggaaactgc
      241 caaggatcag cgtgtgcgtg ttgtcatcgg cgatgggcgg aaagcctttc aacatttttc
      301 gcgacgctcg aggaaggacc agagcgccgg caggaagcat tccgtcacca tcaacggcgc
      361 gtctagtctt atgaacaccg aacggcgcgc gacaaaggcg tgcggttttt catgcggtat
      421 ttgtcgggcc gccagccagt atagctgatc gcgtgcgtcg atccttctgc tcgtgagcgg
      481 cgagcgccac acgctgctat cgctatagag caattcagca agcgggcgcg tcctcaaccg
      541 acgcatggct tgccacacgc ccgaactggc atagagcggc acaacgctgt gcgccgcgac
      601 gaacggcacg cggttcacat tcagcacgac ttcgcggatc cacaccggcg tccgcggcgc
      661 gatgtccagc gccgcggctt catcccgcca cggctgcccc accgtctcgc gggtgacatc
      721 gacggtgaca tcgcctagtt cacgcaaatg tgcggtcaac gaaccgccgc gcgtgagcca
      781 gtccttctga tcagcggtga aagtgggaag cggacggtcg cgccaggcat gagtaccggc
      841 aagaggagct tttggcatgc gcgagattat aaaaccagac acgtatatag gaggattcgt
      901 atagatgtcg gcgtgcgctc acgggagact gccgaaccgg tcggtaaata aacgacggac
      961 cggcgctcgc ggcaatcttg ttgcgggcca tctataaagc atgagaggaa acgcatgtcg
     1021 gtcaatacaa aacaaacgtc aaaggtcgtc gccacgctgg cgtcacatac gttgcacgac
     1081 ccgaaggcct cggtgattgc aaagagcctc gctgcgtcgg cgttatcgca aacgcatacg
     1141 aagaatcaaa cgggcgccga gatggaacat aaggccgggc aagttcttca cagcgacaaa
     1201 tattcgaagg acaccaagac gctggcggcg tcggtcgtgg cgcaagcgaa caaggaacgc
     1261 cgggcaaaat aaactgcaac gccgcgtagc ttatgcctga cctgcaataa aaaaacgcgc
     1321 tgccagtttt cccggcagcg cgtttttttc gcttcttcca accgctaact tatcgcgcca
     1381 gcaacaacgc gttagtccgc ttcacaaagc ttgctggatc ttccagcgtg ccgccttcgg
     1441 ccagcatcgc ctgatcgaag agcagatgac accagtcgcc gaaattcgcg tcatcggcgt
     1501 gaagctgctt caccagcgga tgctccggat tcacttccag aatcggctgc atctgcggcg
     1561 ctgcctgacc tgcttgcttc agcatgcg
//
LOCUS       DATGBK010000172         4609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_233368, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000172 DATGBK010000000
VERSION     DATGBK010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4609
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233368"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VKJ77_02495"
     CDS             complement(<1..551)
                     /locus_tag="VKJ77_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44175.1"
                     /translation="MNHLQAMRVFVKVAETGSFGRAAAALDLSNAVITRYVALLEVHL
                     NTRLLNRTTRSVSLTEAGASYAEGCRAVIEQVESIESTVSQTSFDPSGTLKLVASASF
                     SLFGLTPLLCEYREAFPNVKLRLTLLHRPVDLVDEGFDVGIVVPRMVNSGTLINRPLF
                     KVTPVIVAAPAYLAKHGVPLRPA"
     gene            1027..2190
                     /locus_tag="VKJ77_02500"
     CDS             1027..2190
                     /locus_tag="VKJ77_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC44176.1"
                     /translation="MKKTLIVAAVAASFATAANAQSSVTLYGLIDAGFTYVNNEAAPN
                     TAKGSAAAFRLSSGNLNGSRWGLRGTEDLGGGMKAIFTLESGFSMGNGQALQGQNGSA
                     SGTEFGRQAFAGISTAQFGTVTLGRQYDSVVDYLAPLTANGSWGGTYFSHPFDNDNTQ
                     NSFRVNNSVKYQSANYSGLTFGGLYGFSNQAGGFANNRAYSAGAQYANGPLKVAAAYL
                     QLQNPSSNTAGGAVTDNGAAATTLTKLVGASVQTQRTYGAGASYAIGPVTVGGAWTQS
                     RFQFVAGDSTVRFNNYEVNARYALTPALALGAAYTYTDVKGYTAGPDNNGHEKFHQFG
                     LQTDYALSKRTDIYAEGVVQLGKQGAEAQVYGTNANSVHGNQVVVSTGIRHRF"
     gene            2413..2829
                     /locus_tag="VKJ77_02505"
     CDS             2413..2829
                     /locus_tag="VKJ77_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HMC44177.1"
                     /translation="MVLMSSVASMVSSSAFADTVALQANLQPSSEVPPRVSKGHGALK
                     ATFDTTTKTLQWTVTYADLSGPATMAHFHGPAPVGQNAKVQVAIDKNALPSPITGQAT
                     LSEQQSTDLMAGQYYFNIHTEKNPTGEIRGQVMPAN"
     gene            2926..3861
                     /locus_tag="VKJ77_02510"
     CDS             2926..3861
                     /locus_tag="VKJ77_02510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC44178.1"
                     /translation="MSWQSALACWVLRRRMRPETAKPGIDVARARALTSKRAWLPKVP
                     SGWRLEERYGQDDAPLRGEWLLPGQQVGITILYLHGGGYYFCSPATHRGLVFPLARRS
                     GARTFSLDYRLAPEHPFPAALDDALAAYRKLLADGVSPASMVIAGDSAGGGLALATLL
                     ALRDAGDSLPAGAALFAPWTDLAATGASMTTNDGRDPMFYGRAFAPAGKLYTGDADVR
                     NPYVSPLYGRFDGLPPLFIQVGDTEVLLDDSTRVAEKARAAGVSVELEIWPKMPHVFQ
                     IFAPFVPEANRALEQAAGFVRRVTAPQAVKTSQTS"
     gene            complement(3866..>4609)
                     /locus_tag="VKJ77_02515"
     CDS             complement(3866..>4609)
                     /locus_tag="VKJ77_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EcsC family protein"
                     /protein_id="HMC44179.1"
                     /translation="KLASLVGSPIEKLMAKMPTVAQEKIDDATQAALKKCLQLALRTL
                     SKSTVDGVMLPPERPHNLMHKLAVATTGAAGGAFGLFALPIELPVTTTLMFRSICDIA
                     RSEGEDVHLIDTQLQCMMVLGMGGPSSSDDAADIGYFIVRGTLAQSVSKATSEIATKG
                     LSGHGSTALLKFLQTVASRFSVQVSEQVAAKSIPAIGAVLGAMVNTVFIDHFQQMAHG
                     HFTVRRLERQYGQLAVERAFQTIDIASGK"
BASE COUNT          947 a         1354 c         1392 g          916 t
ORIGIN      
        1 tccgcgggcc tcagcgggac gccgtgtttc gcgaggtaag ccggtgcagc cacaataacc
       61 ggcgtcacct tgaacaaagg ccgattgatc aacgtgccgc tattcaccat gcgcggcacg
      121 acaatcccga catcgaaacc ctcatccacg agatccaccg gccgatgcag cagcgtgaga
      181 cgtaacttca cgttgggaaa cgcctcgcga tactcacaca gcagcggcgt aagtccgaat
      241 aatgagaacg acgccgatgc cacgagcttc agcgtgccgg agggatcgaa cgatgtttgc
      301 gacacggtcg actcaatcga ctcgacctgt tctatcactg cgcggcagcc ttcggcatac
      361 gacgcgccgg cttcggtgag cgacacgctt cgcgttgttc ggttgagtag tcgcgtattg
      421 aggtgcacct cgagcaacgc gacgtaacgc gtgatgacag cgttcgataa atcgagcgca
      481 gccgccgccc ggccgaacga cccggtttca gcgaccttca cgaagacgcg catggcttga
      541 agatgattca tgaccaaccg atgaacaaat agtcgccccg cgtatgcgac gccccgggac
      601 cgaaaagaca cgagtgaggg cggtctttct caagcctccc actcgcgtgc gcgatgctaa
      661 cgcggtgagg ttgtcggtga aataggaata agacgaaagc cgacgaaagc gcgcttgtgt
      721 cgtgcggttg ctactgtcgc aactctgcaa cgggtgcaac taattaggta tccggaagtt
      781 aattcgagat aacgccaatg cctgatggaa caagcgtttg agcgaaatga aaccctattt
      841 ttcgatttat tcaaaaagcc ttttgtgtgc gtcttgatgg ttcggttaaa agcctgcgcc
      901 ctaaactttg tttcagccga atcacggtgt ccggttaaga ccggaaacga gtcgccttgg
      961 tgttacgcag gaaggcgccg cgttatgcaa ccagtcgagt cgtcagactc attaaaggga
     1021 tcacacatga aaaagactct gatcgtcgcg gccgttgccg cttcttttgc gaccgccgca
     1081 aatgcgcaga gcagcgttac gctgtatggc cttatcgatg ctggcttcac ctatgtgaac
     1141 aatgaagctg ctccgaatac cgccaagggc agcgccgcag cattccgcct gtcgagcggc
     1201 aacctcaacg gtagccgttg gggcctgagg ggcacggaag accttggtgg cggcatgaag
     1261 gcaatcttca cgttggaaag cggtttcagc atgggcaacg gccaggcgct tcaaggccag
     1321 aacggcagcg cgagcggtac tgaattcggt cgtcaggcat tcgcaggtat ctcgactgct
     1381 cagttcggca cggtaacgct tggtcgccag tatgactcag tggtcgacta tctcgcgccg
     1441 ttgacggcaa acggtagctg gggcggtacg tacttctcgc atccgttcga caacgacaac
     1501 acgcagaact cgttccgcgt caacaactcg gtcaagtacc aaagcgcgaa ctactccggc
     1561 ctcacattcg gcggcctgta tggcttctcg aatcaggcgg gtggatttgc caacaaccgt
     1621 gcttacagcg cgggcgcaca atacgcgaac ggcccgttga aggttgcagc agcttacctg
     1681 caactgcaaa atcctagctc caacacagcc ggcggtgcgg tgacggacaa cggcgccgcg
     1741 gcgaccacgt tgacgaagct ggtgggcgcg tcggtgcaga cacaacgtac gtacggtgct
     1801 ggcgcgagct atgcgattgg tccggtgacg gttggcggtg catggacgca aagccgcttc
     1861 cagttcgtag cgggcgattc cacggtgcgc ttcaacaact atgaagtgaa tgcgcgttat
     1921 gcgctgacgc cggcattggc acttggcgcc gcgtacacgt acaccgacgt gaagggttac
     1981 accgcgggtc cggacaacaa cggccacgag aaattccacc agttcggttt gcagacggac
     2041 tacgcgttgt cgaagcgcac ggacatctac gcggaaggcg tggtgcaact cggcaagcaa
     2101 ggtgctgaag cgcaagtgta tggtacgaac gccaactcgg ttcacggcaa ccaagtagtg
     2161 gtatcgacgg gtattcgtca ccgcttctaa gttgctgaaa gtttgacgtt gtaacgaaaa
     2221 ggcgccgcga ggcgcctttt cgcgtttccg gcccggtatc ggctatccgg gttcgcgggc
     2281 aaaggcttga cacgcaaaat gcactactat ggcgcgtcga tgagcagacg actcgtccac
     2341 tcgtcagtca cccaggagag agcagacatg ttcacgagat tccgtcttcg taacagcgtg
     2401 ttgggtttga gcatggtgtt gatgtcgtct gtcgcgtcaa tggtgtcgag ctcagctttc
     2461 gccgataccg tcgctttgca agccaacctg caaccgtcga gcgaagtgcc gccgcgcgtg
     2521 agcaagggcc atggagcgct gaaagccacc ttcgacacca cgaccaaaac gctgcagtgg
     2581 accgtgacgt acgccgactt gtcgggtccc gcgaccatgg cccattttca cggccctgcg
     2641 cccgtgggac agaacgccaa ggtgcaggtt gctatcgaca agaacgcgct gcccagtccg
     2701 atcaccggac aggccacgct ttccgagcaa cagtccaccg acctgatggc cggccagtac
     2761 tacttcaata tccacaccga gaagaatccg accggggaga ttcgcgggca ggtgatgccg
     2821 gcgaactgac gaggcgtttg cttgcgggac acggaccgca gccttctcta cacgcgactt
     2881 cgcgaacgat cgtactattg acgttcatcg aaaagaggag tcgccatgag ttggcaaagt
     2941 gcgttggcct gctgggtttt acggcgccga atgcgccccg aaacggctaa gccaggtatc
     3001 gatgttgcgc gagcgcgagc gttgacatcg aagcgcgcgt ggctgccgaa agtaccgtcg
     3061 ggctggcgtc ttgaagagcg atatggccag gacgatgccc cgcttcgtgg cgagtggctg
     3121 ttgcccggtc agcaggtcgg catcacgatc ctgtacctgc atggtggagg ttattatttt
     3181 tgctcgcccg cgacgcatcg cgggcttgtg tttcccctcg cgagacgttc aggcgcgcgg
     3241 accttttccc tcgactatcg gcttgcgccc gagcatccgt ttcccgccgc gctggacgac
     3301 gcactggctg cttatagaaa gctgttggcc gatggcgtgt cgcctgcgtc catggtgata
     3361 gccggcgatt cggccggcgg cggtcttgcg ctcgcgacgt tgctggcttt acgcgatgcg
     3421 ggtgattcac ttcccgcagg cgccgcgttg tttgcgccgt ggacggatct ggcggcgact
     3481 ggcgcgtcaa tgacgaccaa cgatgggcgc gatcccatgt tctacggccg ggcattcgcg
     3541 ccggcgggca agctttatac gggcgacgcc gatgtgcgta atccgtatgt atcgccactc
     3601 tatgggcgct tcgacggtct gccgccgctc ttcatccagg ttggcgatac cgaagtgctg
     3661 ctcgatgatt ccacgcgtgt tgcggagaaa gcgcgtgcag caggcgtgag cgtggagctt
     3721 gagatctggc cgaagatgcc gcacgtcttc cagatattcg cgccgttcgt gccggaggcg
     3781 aaccgcgcac tggagcaggc ggccgggttt gtgcgccggg tcacggcgcc acaggccgtg
     3841 aaaacatcac agacaagcta gcggttcact tcccgctcgc tatatcgata gtctgaaaag
     3901 cgcgctcgac ggccagttgc ccgtattggc gttccagccg gcgcaccgtg aaatgtccgt
     3961 gcgccatctg ctggaaatga tcgatgaaga ccgtgttgac catggccccg agcaccgcgc
     4021 ctatcgccgg gatcgacttg gcggcgactt gctcgctcac ctgcaccgag aaccgcgacg
     4081 ccaccgtctg caagaacttg agcaatgcgg tcgagccgtg tccgctcaaa cccttcgtcg
     4141 caatctcgct cgtcgccttc gataccgact gcgccaaggt tccacgcaca atgaaatagc
     4201 cgatatcggc ggcatcgtcg ctcgaactcg ggccgcccat gccgagcacc atcatgcatt
     4261 gcagctgcgt gtcgatgaga tgcacgtctt cgccctcgct gcgcgcaatg tcgcaaatcg
     4321 agcgaaacat cagcgtcgtg gtaacgggca attcgatcgg caacgcaaaa agtccaaacg
     4381 cgccgccagc cgctccagtg gtcgcgaccg ccagcttgtg catcaggttg tgcggccttt
     4441 cgggcggcaa catgacgcca tcgacggtac ttttactgag cgtgcgcagc gcgagttgca
     4501 ggcatttctt gagcgcggcc tgagtcgcat cgtcgatttt ttcctgcgcg acggtcggca
     4561 tcttcgccat cagcttctcg atgggtgagc cgaccaggct cgcgagttt
//
LOCUS       DATGBK010000173         2724 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_256566, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000173 DATGBK010000000
VERSION     DATGBK010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2724
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256566"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..877
                     /gene="tssC"
                     /locus_tag="VKJ77_02520"
     CDS             <1..877
                     /gene="tssC"
                     /locus_tag="VKJ77_02520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033104 - type VI protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
                     /protein_id="HMC44180.1"
                     /translation="ADLGRPRDLGKVFDTVEYAKWKSFRDSEDSRYVGLTLPRFLGRL
                     PFNPKDGQTAETFNFVEDVDGTDHAKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEG
                     GGLVEDLPTHTFKTDDGEVALKCPTEIAVTDRREKELSDLGFIPLVHCKNSDYAAFFA
                     AQSVQKPKKYNTDSANANSVLSAQLQYIFSVSRVAHYLKAMMRDKIGSFASAQNVEVF
                     LNRWISQYVLLDDNATQEQKAQFPLREASIQVAEIPGKPGSYRSVAFLRPHFQLDELS
                     ISLRLVADLPKPASS"
     gene            948..1493
                     /locus_tag="VKJ77_02525"
     CDS             948..1493
                     /locus_tag="VKJ77_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
                     /protein_id="HMC44181.1"
                     /translation="MKDIYLKFGNPAIKGESQDKDHANWVEIDSWSHAITQPRSATAS
                     TAGGHTSERCEHGDMVFTKDIDVVSPLMYQHASGGTTFDEVTIDFMRSDGEGNRIKYL
                     EVKLKYVIISSINPSINAPTAAATTGATAGAGASLPSEQFSLKYAAVQWKYTQQKIGG
                     NQSGNAQGAWSLTKNDKTYAV"
     gene            1638..2117
                     /gene="tssE"
                     /locus_tag="VKJ77_02530"
     CDS             1638..2117
                     /gene="tssE"
                     /locus_tag="VKJ77_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HMC44182.1"
                     /translation="MKRFEPSFLDKLFDDDPYEPAAAALRQLSLEELKSTVARDVESL
                     LNTRIAFTQADLAALPECQLSILTYGLNDFAGMSLASHYDRVFICQSIQQAIARHEPR
                     LQQVSVKLELNEQSTSALNFAIRAVLIVHPAEEPVSFDAMLLPSTLQYSVTRSRAKL"
     gene            2207..>2724
                     /locus_tag="VKJ77_02535"
     CDS             2207..>2724
                     /locus_tag="VKJ77_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015600388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HMC44183.1"
                     /translation="MEELLPYYERELSFLRRYSRDFAERYPKIAARLAMSGEHAEDPH
                     VERMIQSFALLGARINKKLDDDYPEFTEALLEVLYPHYLRPFPSCSIAQFDPGQALGQ
                     LTGTATIERGTELKSRPIRGVQCRFRNAYDVVLAPLRIVEAKYTPVASAPSATVLPRD
                     AAALISVTFESTA"
BASE COUNT          555 a          823 c          814 g          532 t
ORIGIN      
        1 cgccgacctc ggccggccgc gcgatctcgg caaggtgttc gataccgtcg agtacgcaaa
       61 gtggaagtcg ttccgcgatt cggaagactc gcgttatgtc ggccttacgc tgccgcgttt
      121 cctgggacgc ctgccgttca atcctaaaga tggccagacg gcagagacct tcaattttgt
      181 cgaggacgtg gatggaacag accatgccaa gtacctgtgg tgtaacgcag cgtgggcatt
      241 tgctgcgcgc ctgaccgcag cgttcgatga cttcggctgg tgcgcggcca ttcgcggcgt
      301 ggagggtggt ggcttggtgg aagacttgcc gacacacact ttcaagaccg acgacggcga
      361 agtggcgctc aagtgcccga ccgaaatcgc ggtgacggac cgtcgcgaga aagaactgag
      421 cgaccttggt ttcatcccgc tggttcactg caaaaattcc gattacgccg ctttcttcgc
      481 agcgcaatcg gtacagaagc ccaagaaata caacaccgat agcgcgaacg ccaactcggt
      541 cctgtccgct cagttgcagt acatcttctc ggtttcgcgc gtggcgcatt acctgaaggc
      601 catgatgcgc gacaagatcg gcagtttcgc ctcggctcag aacgtcgaag tgttcctgaa
      661 tcgctggatc tcgcagtacg tgttgcttga cgacaacgcg actcaggaac aaaaggcgca
      721 gttcccgctg cgcgaggcat ccatacaagt ggcagagatc cccgggaagc cgggttcgta
      781 ccggtcagtg gcgttcttgc gcccgcattt tcaactggac gaattatcga tttcgctgcg
      841 gcttgtcgca gatctaccga agcccgcttc ttcctgaacg gcatgactgc gtgtggcctg
      901 gacaccgtcc gggccggcta taaaaccact ctatggggag tcgaggtatg aaggacatct
      961 acttgaaatt tggtaatccc gcgatcaaag gcgaatcgca ggacaaggac cacgcgaact
     1021 gggtcgagat cgattcgtgg agccatgcga tcacccagcc gcgttcggct acggcgtcca
     1081 ccgccggcgg tcacacgtcc gagcgctgcg agcacggcga catggtgttc acgaaggaca
     1141 tcgacgtcgt cagcccgctc atgtaccagc acgcttccgg cggcacgaca ttcgacgaag
     1201 tcaccatcga cttcatgcgt tcggatggcg aaggcaatcg catcaagtac cttgaagtga
     1261 agctcaagta cgtgatcatc tccagcatca acccgagcat caacgcgccc accgcagcgg
     1321 ccactacggg tgcgaccgcg ggcgccggcg caagcctgcc gtccgagcag ttctcgctga
     1381 aatatgcagc cgtgcagtgg aagtacacgc aacagaagat cggcggcaac cagagcggta
     1441 acgcgcaagg cgcctggagc ctgaccaaga acgacaagac ctacgcggtc tgattctggc
     1501 gtttcaaaga gttgcagcga gtcctggggc atcctgatcc tggccggtgc tgagacgctt
     1561 ggggccggta cgcatccgcg tccggcgctg gcgtcgcttt cacgcccaag tttcgaccgc
     1621 aagcaaagca gggcttcatg aaacgtttcg agccgagctt tctcgacaaa ctattcgacg
     1681 acgacccgta cgaaccggct gcggccgcgc tgcgtcaatt gtcgcttgaa gagctgaaga
     1741 gcaccgttgc ccgcgatgtc gaatcgctcc tgaacacgcg tatcgctttc acgcaagcag
     1801 acctggctgc gttgccggaa tgtcagttgt ccatcctgac ctatgggctc aacgactttg
     1861 ctggaatgag cctcgcgagc cactacgacc gcgtgtttat ctgccagtcg atccagcagg
     1921 ccattgcccg gcacgagccg cgtttacagc aggtatcggt gaagctcgaa ctgaacgagc
     1981 agtccaccag cgcgctcaac ttcgcgatcc gcgccgtgtt gatcgtgcat ccggccgaag
     2041 agccggtcag cttcgacgcc atgttgctgc cgtcgacgtt gcaatattcc gtgacgcgct
     2101 cacgggcgaa gctttgaagc gcgccctgag ctgcgaacct tagtgtgtcg tctggttttt
     2161 ctgcaaggca gcatccgtgc aagacacgga gacggggatt tgagcaatgg aagaactgct
     2221 gccgtattac gagcgcgagc tgtcgttcct gagacgttat tcgcgcgact tcgctgaacg
     2281 gtatccgaag atcgcagcgc gtctcgccat gtcgggcgag cacgcggagg acccgcacgt
     2341 cgagcgcatg atccagtcgt tcgcgttgct tggggcacgc atcaacaaga agctcgacga
     2401 cgattacccc gagttcacgg aagcgctgct ggaagtactt tatccgcact acttgcggcc
     2461 gtttccctcg tgttcgatcg cccagttcga cccagggcag gcgcttggcc agctcaccgg
     2521 gacggccacg atcgagcgtg ggaccgagtt gaagtcccgg ccgattcgcg gcgtgcagtg
     2581 ccgctttcgc aacgcgtatg acgtcgtgct ggcgccgctc aggattgtcg aggcgaagta
     2641 cacgccggtt gcatcggcac cgagcgcgac ggtcttgccg cgggacgccg cagcgctgat
     2701 ctccgtcacc ttcgaatcca ccgc
//
LOCUS       DATGBK010000174         1778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_326086, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000174 DATGBK010000000
VERSION     DATGBK010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326086"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..588)
                     /locus_tag="VKJ77_02540"
     CDS             complement(<1..588)
                     /locus_tag="VKJ77_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005663909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC44184.1"
                     /translation="MADDRPGLLIVEDDLGLQKQLKWCFDEYRVWVAATRAEAVAQLR
                     RYEPAVVLQDLGLPPDPAGVSEGFKTLQELLQAAPQVKVIVVTGNGDQSNAVKAVGLG
                     ATDFYQKPLEPQILKLVVARAFRLHALEEQNRALQVRSSSPLAGIIATDEAMLKVCRM
                     VEKVAPTDVSVLILGESGTGKELLAHAIHGLSSRKA"
     gene            complement(591..>1778)
                     /gene="prsK"
                     /locus_tag="VKJ77_02545"
     CDS             complement(591..>1778)
                     /gene="prsK"
                     /locus_tag="VKJ77_02545"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR02916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="XrtA/PEP-CTERM system histidine kinase PrsK"
                     /protein_id="HMC44185.1"
                     /translation="FYRNKYDYRVEWLRFVRTLSSASPENVQLGALQALAQVLLSSQA
                     LLFVADERGRQFRATASWCESGEEIVLPADVSESADMLQFMQRRGWIIDVDEYRRAPA
                     FYENIQLPDWLEVNSALSIVAPMMQGTALAGFVVLARPPPPFELTYEDRDLLMTMGRH
                     VATHLAQHAADRKLVENRQFEAYSRLTAFMMHDLKNSVAQLRLVVSNAVKYRHELEFV
                     DDAMVTIDNAAQRMTRLVDQLRLGAAGAVRRPLKLDELIRAALGRCAANAPQPVLGAV
                     ATGVIVEADQEHLTSVIEHVIRNAQDATPDDGVVRIDISQTGAAVTIAVTDTGRGMEA
                     DFVRNRLFRPFDSTKGSAGMGIGAYQAREYVISLGGSVNVQSTPGQGTSFAITLPALK
                     TQD"
BASE COUNT          340 a          567 c          523 g          348 t
ORIGIN      
        1 tgctttgcga gagctcaagc cgtggatcgc gtgcgccaaa agttccttgc cggtgccact
       61 ctcgcccagg atcagtaccg agacatcggt cggcgcaacc ttttccacca ttcgacagac
      121 tttgagcatc gcctcgtcgg tggcgatgat gccggcgagc ggcgagctcg atcggacctg
      181 caaggcgcgg ttctgctcct cgagcgcatg cagccgaaat gctcgtgcaa cgacgagttt
      241 caggatttga ggctcaaggg gcttttgata gaaatccgtg gcgcccagac cgactgcctt
      301 tacggcgttg ctttgatcgc cattgccggt cacgacaatg accttgacct gcggcgctgc
      361 ttgtagaagc tcctgcaggg tcttgaaccc ttccgagaca cccgctgggt caggaggcag
      421 tcccagatcc tgcagaacca cggccggctc atacctgcgc agctgcgcca ccgcctcggc
      481 gcgcgtcgcg gcgacccaca cccgatattc atcgaagcac cacttgagct gcttttgcag
      541 accaagatcg tcctctacga tcagcaatcc gggtcggtcg tcagccattc ctagtcctgc
      601 gtctttaaag ccggcagggt aatcgcaaag ctcgttccct gaccgggcgt actttgcaca
      661 ttgaccgagc caccgagtga gatcacgtac tcccgcgcct gataggcgcc aattcccatg
      721 ccggcggagc ctttggtcga atcgaatggc cgaaacaagc ggttgcgcac gaaatcggct
      781 tccatgcccc gaccggtgtc ggtcacggca atggtaaccg cggcgcccgt ctggctgatg
      841 tcgatcctca cgacgccatc atccggggtt gcatcctgtg cgttgcggat gacatgttcg
      901 atgacgctcg tcagatgctc ctgatcggcc tccacgatga cgcccgtggc taccgcgccg
      961 agaacgggct gcggcgcgtt cgcggcacag cggcctaacg cggcacgaat gagctcatcg
     1021 agcttcagcg gccggcgcac cgcgcccgcc gcgccgaggc gcagctggtc gacgaggcgc
     1081 gtcatgcgct gcgctgcgtt gtcgatcgtc accattgcat catcgacgaa ctcaagctcg
     1141 tgacggtatt tgacggcgtt tgataccacg agtcgcagct gtgcgacgga attcttcaga
     1201 tcatgcatca tgaaggcggt aaggcggctg taggcttcaa actgccggtt ttcgacgagt
     1261 ttgcggtccg ctgcgtgctg cgcaagatgt gtcgccacat gtctacccat cgtcatcagc
     1321 aggtcgcggt cttcgtacgt cagctcgaag ggcggcgggg gtcgcgctag caccacaaag
     1381 cccgcgagcg ccgtgccctg catcatcggc gcgacgatac tcagggcaga attgacttcc
     1441 agccaatcgg gcaactgaat gttctcgtag aacgcgggcg cccttcgata ctcgtcgaca
     1501 tcgatgatcc agccgcggcg ctgcatgaat tgcagcatgt cggcgctttc gctgacgtcc
     1561 gcaggtaaca cgatttcctc gccggactcg caccaggagg ccgtggcgcg aaattgccta
     1621 ccgcgttcgt ccgcgacaaa cagcagcgcc tgcgaactca aaagaacctg cgccagcgcc
     1681 tgcagcgctc ccaattgcac attctcgggc gacgccgagg agagggtgcg cacgaaccgc
     1741 agccactcaa cgcgatagtc atatttgttg cgatagaa
//
LOCUS       DATGBK010000175         1955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_25348, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000175 DATGBK010000000
VERSION     DATGBK010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25348"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1453
                     /locus_tag="VKJ77_02550"
     CDS             <1..1453
                     /locus_tag="VKJ77_02550"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HMC44186.1"
                     /translation="RDTSWFVHGYDYLLPQFSRDALELFNRFVEDSGQMVEYVRGVNG
                     FKTSYDLNINDDTPLHIIAILHHYNATLDNDWLRKVYPLVVKITDYMLTQRDGNGLLF
                     CKAGGVDMFGITSWRNIIPYYTLDGAVTEINAEGYFAVEAAAMLSAIVDDNANWERYS
                     SEARALREAMMSKLFNADSSAFVLNYDHEQNYQDNFTADEVFPVLFNVAEQPVRQAIL
                     RRLLEADFTTPVGLRTISTADSWYFPSHGFGLLGGVWPDLTLWFVVALARNGFPESAV
                     HWLEAIYISMEAGVSRNTVPGQFGEWFDGGSLTNRGMYLSPWTGAKYLWAVAETVCGL
                     DGYRTSGRPHFSPILPPGWNWTAGVRVHWGGRRHTYVIDAVNKRIVGDMTFASADEPY
                     SVLYAGRDMSEEVTTSPVDVAAIAFEDARGAVTMFLCNQHDKARNVAIEFRGKTERRT
                     LAPGELAEIALFGKPDLIDAMPAPLPEPMAAPA"
     gene            1505..1933
                     /locus_tag="VKJ77_02555"
     CDS             1505..1933
                     /locus_tag="VKJ77_02555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44187.1"
                     /translation="MHSRRPRQAMLLVGGGLILLIAIGIGQRLGDRVLSQATDRHSPI
                     VGIHTTPVPGSTDPAIKNWRRDQVVSVATDPAFPDPRVTPPPTPRPTPPPPPPTPRPT
                     ASPTGPVYTSPPLPFPIASHLPGETETEPPQATPTPLPPP"
BASE COUNT          366 a          614 c          595 g          380 t
ORIGIN      
        1 gcgcgatacg tcgtggttcg tacacggcta cgactacttg ctgccgcagt ttagtcgcga
       61 tgcgctcgag ctttttaacc gctttgttga agatagcggt caaatggtcg aatacgtccg
      121 cggcgtgaac ggctttaaga ccagttacga cctcaacatc aacgatgata cgccattgca
      181 tattatcgcg atcttgcatc actataatgc gacgctcgat aacgattggc tgcgcaaagt
      241 gtatccgctc gtcgtcaaga ttacggacta catgcttacg cagcgcgacg gcaacggtct
      301 attgttctgt aaggcgggcg gtgtcgacat gttcggcatc acgtcctggc gcaatattat
      361 tccgtactac acgctcgacg gggcggtgac ggaaatcaac gccgaagggt atttcgccgt
      421 tgaggcggcc gcgatgctgt cggcgatcgt tgacgataac gcgaattggg aacgctattc
      481 gagcgaagca cgcgccctgc gcgaagcgat gatgagcaag ctgttcaacg cggattcatc
      541 ggccttcgtc ctcaactacg atcacgagca aaactatcaa gacaacttca cggccgatga
      601 agtcttcccg gtgcttttta acgtggccga gcagccggtg cgccaggcaa ttctgcggcg
      661 gctgcttgaa gcggacttta caacacccgt cggcctgcgc acgatttcca ccgcggattc
      721 gtggtatttc ccatcgcacg gtttcggatt gctcggcgga gtgtggccgg acttaacgtt
      781 gtggttcgtg gtcgcgctcg cgcgtaacgg gtttcccgaa tcggccgtgc attggctcga
      841 agcgatctac atttcgatgg aggcgggcgt atcgcgcaat accgtgccgg gccaattcgg
      901 cgaatggttt gacggcggct cgctcaccaa ccgcggcatg tatctctcgc cgtggaccgg
      961 cgcaaaatac ttatgggcgg tggcggaaac ggtgtgcgga ctcgacggct atcgcaccag
     1021 cggccggccg catttctcac cgatcttgcc gccgggctgg aattggaccg cgggcgtgcg
     1081 cgtgcattgg ggcgggcggc gccacaccta cgtgatcgac gcagtaaata agcgcatcgt
     1141 gggcgatatg acgttcgcgt ctgccgatga accgtatagc gtcctgtacg ccggtcgcga
     1201 tatgagcgaa gaagtgacga catcgcccgt tgatgtcgcg gccatcgcgt tcgaagatgc
     1261 acgcggcgcg gtaacgatgt tcttgtgcaa ccagcacgat aaagcgcgca acgtcgcgat
     1321 tgaatttcgc ggaaaaaccg aacgccggac gctggcaccg ggcgagcttg ccgaaatcgc
     1381 gctgttcggc aagccggatc tgatcgacgc gatgcccgcg ccgctgcccg aaccgatggc
     1441 ggcgcccgcc tgaagctagg caagcgagcg ggagttaaag gcgtcgcttg gaatgggccg
     1501 tgcgatgcat agccgccgtc cgcgccaggc catgttgctc gtcggcggcg ggctcatttt
     1561 gctcattgcc atcggcatcg ggcaacgctt gggcgaccgc gttttgagcc aagcgacgga
     1621 ccggcactcg ccgatcgtcg gcattcacac gactcccgtg ccgggctcga cggatcccgc
     1681 gatcaaaaat tggcgacgcg atcaggtcgt gagcgtcgcg accgatcccg ccttccccga
     1741 tccacgcgta acgccgccac cgacgccgcg gcccacgccg cccccgcctc cgcccacgcc
     1801 gcgccccacg gcgtctccga cgggccccgt ttacacgtcg ccgccgctgc cgtttccgat
     1861 cgcatcgcat ctgccgggtg agaccgagac cgagccgccg caggccacac ccacgccgct
     1921 gccacctccg taacttcccg gccccccgcg cggtc
//
LOCUS       DATGBK010000176         1541 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_210231, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000176 DATGBK010000000
VERSION     DATGBK010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210231"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VKJ77_02560"
     CDS             <1..489
                     /locus_tag="VKJ77_02560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC44188.1"
                     /translation="YLLIVVNFQSWLDPFIIITALPAALAGIVWMLFLTHTTVSVPAL
                     TGAIMCMGVATANSVLMVSFARERLNAGDDAASAASQAGFERFRPVLMTALAMIIGMV
                     PMALGLGDGGEQNAPLGRAVIGGLVFAIVATLFFVPTLFAIIHGRSGAPGAAQLSGTT
                     HD"
     gene            446..>1541
                     /locus_tag="VKJ77_02565"
     CDS             446..>1541
                     /locus_tag="VKJ77_02565"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC44189.1"
                     /translation="MRRVPHNYPEQPMTEVSPASVTAKPSHIARYAWIALLVALILAA
                     WGIISRVHARANLAKETTAAAILQVTTLKPTQSPASEDLVLPGSVQALIEAPIYARTS
                     GYLKFWYTDIGSQVKKGQLLAEIDAPEVDQQYSQAQADLGTAHANSELAVSTNERWRG
                     LLATHSVSQQDADTKAGDAAAKHAAEESAGANVRRLRDLESFKRVLAPFDGVVTQRNT
                     DVGALIVAGQNAGSPLFRVADTTKLRIYVLVPEPYAASTRPGMDAALRFSEHPGKSYP
                     AAVVRTANALDPALRTLQVELQVDNARGELFPGSYAEVHFKVPGSSNSLSVPANALLF
                     RAAGLQVATVDSGAHVRLKTIVPGRDFGKSI"
BASE COUNT          268 a          505 c          489 g          279 t
ORIGIN      
        1 tacctcctga tcgtcgtcaa ctttcagtcc tggctcgacc ccttcatcat cattaccgca
       61 ctgccggcag cgcttgccgg catcgtctgg atgctgtttc tcacgcacac gacggtgagc
      121 gtgccggcgc tgaccggcgc catcatgtgc atgggcgttg caactgccaa cagcgtcttg
      181 atggtgagct tcgcgcgcga acgcctgaat gccggagacg acgccgcaag cgcagcgtcg
      241 caggcgggct ttgagcgctt tcgcccggtg ctcatgacgg cgctggcgat gatcatcggc
      301 atggtgccga tggccctagg tttgggcgac ggcggtgagc agaatgcgcc gctcggccgc
      361 gccgtgatcg gcggcttggt attcgcaatc gttgcgacac tgtttttcgt gccgacgctg
      421 ttcgccatca tccacgggcg ctccggtgcg ccgggtgccg cacaactatc cggaacaacc
      481 catgactgaa gtatcacccg caagcgtcac cgccaagcct tcgcacattg cgcgctatgc
      541 gtggatcgcg ctcctggtcg cgttgatcct cgcggcgtgg ggcatcatca gccgcgtgca
      601 tgcgcgcgcc aatctcgcca aggagacgac cgcggcggcg atcctgcagg tcactacgct
      661 gaaacccacc cagagcccag cctccgagga tctggtgctg ccgggcagcg tgcaggctct
      721 catcgaagcg ccgatctatg cgcgcaccag cggctacctc aaattctggt acaccgacat
      781 tggctcgcag gtgaagaaag ggcagctgct tgccgagatc gatgcccccg aggtcgatca
      841 gcagtacagt caggcgcagg ccgatctggg cacggcgcac gccaactccg agctagcggt
      901 gagcaccaat gaacgctgga ggggcttgct cgcaacccac tccgtttccc agcaggatgc
      961 cgataccaag gcgggcgatg cggccgcaaa gcacgcggcc gaggaatcgg ccggcgccaa
     1021 cgtgcggcgg ctgcgtgatc ttgagtcctt caagcgcgtg ctcgcgccat ttgatggcgt
     1081 tgtcacacaa cgcaacaccg atgtcggcgc gttgatcgtg gctggccaga acgcgggtag
     1141 cccgctgttc cgggtcgccg acacgaccaa gctgcgcatc tacgtgctgg tgccggagcc
     1201 gtacgccgcg tcgacgcgac cgggcatgga cgctgcactg cgcttcagcg aacaccctgg
     1261 caagagttat cccgcagcgg tggtgcgcac ggcaaatgct cttgacccgg ctttgcgcac
     1321 gctgcaggtg gaactgcagg tcgacaatgc gcgcggcgag ctctttcccg gatcgtatgc
     1381 ggaagtccat ttcaaggtgc ccggcagcag caacagcctg agcgtgccgg ccaatgccct
     1441 gctattccgt gccgccgggc tgcaggtggc aacggtcgac tccggcgctc acgtgcggct
     1501 caagactatc gttccgggcc gcgacttcgg taagtcaatt g
//
LOCUS       DATGBK010000177         5837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_256589, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000177 DATGBK010000000
VERSION     DATGBK010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5837
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256589"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1257
                     /locus_tag="VKJ77_02570"
     CDS             <1..1257
                     /locus_tag="VKJ77_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004537821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HMC44190.1"
                     /translation="PAAPTEPFSVDSSKINSGDTAWMLTSTALVLFMTIPGLALFYAG
                     MVRKKNVLATVMQSFAICCLVTILWTVVGYSLAFTPGNAFIGGFSRVFLHGMNYIHGD
                     KATTLTVSHLAPTIPETVYFVYQMTFAIITPALIAGAFADRMKFSAMLVFMGLWTIIV
                     YSPIAHMVWEPTGWLSAAGILDFAGGTVVHINAGIAGLVCCLVLGKRVGYGREVMAPH
                     NLVLSLIGASMLWVGWFGFNAGSAVAADGRAGFAMLTTQVATAFAAFGWMFAEWLAKG
                     KPSVLGIISGAVAGLVAITPASGYVGVTGAIVIGIAAGVVCFWSATWLKTKLGYDDSL
                     DAFGVHGVGGILGALLTGIFAVKDIGGADGSILLQAKGVLTTLVYSGVVSFVLLKVID
                     MVMGLRVTEEEEREGLDVTLHGEHVE"
     gene            1560..2849
                     /gene="gshA"
                     /locus_tag="VKJ77_02575"
     CDS             1560..2849
                     /gene="gshA"
                     /locus_tag="VKJ77_02575"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013337902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HMC44191.1"
                     /translation="MVPHLVTALNGPLLDLERKILDATPSIERWFRLEWQEHTPPFYC
                     SVDLRNAGFKLAPVDTNLFPGGFNNLPVEVLPLAVQAAMASIEKICPDAKNLLVIPER
                     HTRNAFYLENVARLATIMRQAGLNIRFGTLDENIHGPVTIALADGQKIVLEPLERTPR
                     RLGLKNFDPCSILLNNDLSGGIPPVLENLHEQYLLPPLHAGWAVRRKSNHFACYDDVA
                     KKFSKLVEIDPWMINPYFAHVEGVDYEARTGEEALADAIDGVLKKIAKKYREYGISEK
                     PYVVIKADAGTYGKGVMTVHDASEVAALTKRERVKMNDAKDGLEVHDVIVQEGVHTFE
                     RVENAVAEPVVYMIDRYVVGGFYRVHDSRDRDQNLNAPGMHFVPLGFEHTALPDAHAK
                     PGAAPPNRFYMYGVVARLGLLAASVELEKTDPEAIQV"
     gene            3022..3978
                     /gene="gshB"
                     /locus_tag="VKJ77_02580"
     CDS             3022..3978
                     /gene="gshB"
                     /locus_tag="VKJ77_02580"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HMC44192.1"
                     /translation="MDILFIADPLDHFKIYKDTTYAMMAEAARRGHTIYACEPQHLAW
                     VGTKVEGAVQRVTIVGDEADSARSPWYEAAAPELLDLKHFGAVLMRKDPPFDMEYVTS
                     TWLLELAERTGARIFNKPSAIRDHSEKLAIGEWPEFVVPTLVTRDAARLRAFHAEHGD
                     VILKPLDGMGGMGVFRVKADGMNLGTIVEMLSDNGARSVMAQKFIPQIADGDKRILLI
                     GGQPVPYSLARIPQGNEVRGNLAAGGLGRAQPLTENDRRIAETLGQTLFARGLLLVGL
                     DAIGDYLTEVNVTSPTCFREIMDQTGFDVAGMFIDALERAAA"
     gene            4320..4817
                     /locus_tag="VKJ77_02585"
     CDS             4320..4817
                     /locus_tag="VKJ77_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HMC44193.1"
                     /translation="MAGILIIAHAPFASALRECISHIYGGLPARIGAIDVKPDCDPVE
                     VRAFARSEIDRLKEENGAIVLTDVFGATPANIAQSLASGNVRVLAGVNLPMLVRAVCY
                     RTTPLDTLAEKSLQGGSKGIQELDASTPVNPCAIASAAAAAAVTSCAVGAAATSCMPA
                     KVASH"
     gene            4929..5198
                     /locus_tag="VKJ77_02590"
     CDS             4929..5198
                     /locus_tag="VKJ77_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010101417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HMC44194.1"
                     /translation="MLQQETTIVNKLGLHARASAKLTQLAGNFQCEIWMSRNGRRINA
                     KSIMGVMMLAAGIGSTVTIETEGSDEAEAMKGILALIADKFGEGQ"
     gene            5470..>5837
                     /locus_tag="VKJ77_02595"
     CDS             5470..>5837
                     /locus_tag="VKJ77_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-utilizing N-terminal
                     domain-containing protein"
                     /protein_id="HMC44195.1"
                     /translation="MSFTLHGIPVSRGIAIGRAYLIAAAALDVDHYLVEPDHIDLEIE
                     RFHTAQAQVHAELDALRDDLAADAPSEMGAFINVHSMILNDAMLVHETIDLVRTRRYN
                     VEWALTEQLEILSRHFDDIE"
BASE COUNT         1168 a         1689 c         1774 g         1206 t
ORIGIN      
        1 cccgccgcac cgacggaacc gttctctgtt gattcatcga agatcaattc cggcgacacc
       61 gcctggatgc tgacgtcgac cgccctcgtg ctgttcatga cgatcccggg cctcgcgctc
      121 ttctacgcgg gcatggtccg caagaagaac gtgctcgcga ccgtgatgca gagcttcgcg
      181 atctgctgcc tggtcacgat cctctggacc gtggtgggct acagccttgc gttcacgccg
      241 ggtaatgcgt tcatcggcgg cttctcgcgg gtgttcctgc acggcatgaa ctacatccac
      301 ggcgacaagg cgaccaccct gaccgtcagc catctggctc cgacgattcc ggagaccgtc
      361 tacttcgtct atcagatgac gttcgcgatc atcaccccgg cgctgatcgc cggcgcgttt
      421 gccgaccgga tgaagttctc ggcaatgctg gtcttcatgg gactgtggac gatcatcgtc
      481 tactcgccga tcgcgcacat ggtctgggaa ccgacgggtt ggttgtcggc ggctggcatc
      541 ctcgacttcg caggcggcac ggtggttcac atcaacgccg gtatcgctgg tctggtgtgc
      601 tgtctggtgc tcggcaagcg ggttggttat ggccgcgaag tcatggctcc gcacaacctc
      661 gtgctctcgc tgatcggtgc ttcgatgctg tgggtcggct ggttcggctt caacgcgggt
      721 tcggcagtgg cggctgacgg ccgtgccggt ttcgcgatgt tgacgacgca agtcgctacc
      781 gcatttgccg cgttcggctg gatgttcgcc gaatggctgg ccaagggtaa gccttcggtg
      841 ctcggcatta tttcgggcgc ggttgcaggt ctggtggcga ttacgccggc ttctggttac
      901 gtcggcgtga ccggcgcgat cgtgatcggt attgcggctg gcgtggtctg cttctggtcg
      961 gcaacgtggc tcaagacgaa gctcggctac gacgattcgc tcgacgcgtt cggcgtccac
     1021 ggcgtgggcg gtattcttgg cgcgctcttg accggcatct tcgcggtcaa ggatattggc
     1081 ggtgcggacg gcagcatcct gctgcaagcc aagggcgtgc tcaccacgct ggtctacagc
     1141 ggcgtggtca gcttcgtgct gttgaaggtt atcgacatgg tcatgggtct gcgtgtcaca
     1201 gaagaagagg aacgtgaagg cctcgacgtg acgctgcatg gcgaacacgt cgaataagaa
     1261 gttttttcga tggcggtgat gcccggcgcg agaggtcgcg gcgtcatccg catagtcgag
     1321 cgcaggctat agcagttcgg ctccgagaaa agcgcagcgt tttgcccgcc cacttaccgg
     1381 cgggcatttt tttgtcccgg tttttgtccc gtttttgtgc gaggtaactg tttctggctg
     1441 gcggaattgg tgcaaacagc ggcacgaacc atgcgaatag gcttgggaaa agggagttca
     1501 tacccaaata ggtgaggcgt ttgttctaca atctttcctc ttaagtccgc gagtcatcaa
     1561 tggttccgca cctcgttacg gctttaaacg gccctttgct cgatctcgaa cggaagatac
     1621 tcgacgcgac gccgtccatc gaacgctggt ttcggctgga gtggcaagaa cacaccccgc
     1681 cgttttactg ctcggtcgac ctgcgcaacg ccggtttcaa gctcgctccc gtcgatacca
     1741 acctgttccc cggcggcttc aacaacctgc cggtcgaagt gctgccgctc gccgtgcagg
     1801 ccgcgatggc gtcgatcgaa aagatctgcc ccgacgcgaa gaacctgctc gtgatccccg
     1861 agcgccatac acgcaatgcc ttttatcttg agaacgtcgc gcggctcgcc acgatcatgc
     1921 gtcaggccgg gctgaatatc cgcttcggca cgctcgacga aaacattcac ggaccggtca
     1981 ccatcgcgct tgccgacggg cagaagatcg tcctggaacc acttgaacgc acgccgcgcc
     2041 ggctgggcct gaaaaacttc gatccctgct cgatcctgct gaacaacgac ttgtccggtg
     2101 gtattccgcc cgtgctggaa aacctgcacg agcaatatct gctgccgcca ttgcacgcgg
     2161 gctgggccgt gcgccgcaag tcgaatcact tcgcctgtta tgacgacgtc gcgaagaagt
     2221 tttcgaagct cgtcgagatc gatccgtgga tgatcaaccc gtatttcgcg cacgtggaag
     2281 gcgtggatta cgaggcgcgt accggcgagg aagcgctggc ggatgcaatc gatggcgtgt
     2341 tgaagaagat tgcgaagaag tatcgggagt atggaatcag cgagaaaccg tacgtcgtga
     2401 tcaaagccga tgccggcacc tacggcaaag gcgtcatgac ggtgcacgac gcgtcggaag
     2461 tcgccgcgct gaccaaacgc gaacgcgtga agatgaacga cgcgaaggat ggcctcgaag
     2521 tccacgacgt gatcgtgcag gaaggcgtgc acacgttcga gcgcgtggaa aatgcagttg
     2581 ccgagccggt ggtctacatg atcgaccggt atgtggtggg cgggttttat cgtgtgcacg
     2641 attctcgtga ccgcgaccag aacctcaacg cgcccggtat gcatttcgtg ccgctgggct
     2701 tcgagcatac ggccttgccc gacgctcatg cgaagcccgg cgcagcgccg ccgaaccgct
     2761 tctatatgta tggcgtggtg gcgcggctgg ggttgctcgc ggcatcggtg gaacttgaga
     2821 agaccgatcc tgaagccatt caggtttaag ctttagaaca ttacgacggc cgcacgaagt
     2881 tgcggccgtt tgcacttcag gcgcgaacgc gcgcgacgtg ttaaaaatcg cgtattgcga
     2941 cgtattgcga cgcattgcaa gactggcagc aacgcacttc acactgatca aaccaaggcc
     3001 gaacggccgc tctggacgct tatggacatc ctttttatcg ccgatccgct cgatcacttc
     3061 aagatctaca aagacacgac ctacgcgatg atggccgaag ccgcgcgtcg cggacacacg
     3121 atctacgcgt gcgagccgca gcatctggcc tgggtcggca cgaaagtgga aggggcggtc
     3181 cagcgcgtga caatcgtcgg cgacgaagcg gattccgccc gctcgccatg gtacgaagcc
     3241 gccgcaccgg aactgctcga cctcaagcat ttcggcgcgg tcctgatgcg caaagacccg
     3301 ccgttcgaca tggaatacgt cacgtcaacg tggctcctgg aactggcgga gcgcaccggc
     3361 gcacgcatct tcaacaagcc gagcgccatt cgcgatcact ccgagaagct ggcaatcggc
     3421 gagtggccgg agtttgtagt gcccacgctg gttacccgcg atgccgcgcg tctgcgcgct
     3481 ttccatgccg aacacggtga cgtgatcctg aagccgctcg acggcatggg tggcatgggc
     3541 gtgtttcgcg tgaaggctga cggcatgaac ctcggcacga tcgtggaaat gctcagcgac
     3601 aacggcgcgc gtagcgtcat ggcgcagaag ttcatcccgc aaattgccga tggcgacaaa
     3661 cgcatcctgc tgatcggcgg acaaccggta ccgtattcgc ttgcccggat tccccaaggc
     3721 aacgaagtac gcggcaacct ggcagcgggc ggattgggtc gcgcacaacc gctcacggaa
     3781 aacgatcgcc gaatcgcaga gacgctggga cagacgcttt tcgcacgcgg cttgctgctg
     3841 gtcggactcg atgccatcgg cgactatctg accgaagtga acgtgaccag cccgacgtgc
     3901 ttccgcgaaa tcatggacca gacaggtttc gatgtcgccg gcatgttcat cgatgcattg
     3961 gaacgagcgg cggcttagtc gtgtgagcag ggacaagaag cgagaaatta gaggcggctg
     4021 tcgaagaggg cagtccgccc gttgatttct cccagactgt tacaatctcc ccctcatgag
     4081 attcgtttcg tggcgcgatc cggccccgaa attgaaagtg gaaacttgct gcagcgcgtt
     4141 gcgctgcgca tagcgtgcga aatccgacta agcttaggta atggcgattg ttgagatttc
     4201 tgcacccgga tcgatgttgc agtcgcggtt tgcagtattt ggcatcgcaa ttggcatata
     4261 taacgcaagt tcccacgatt tccgacgcat ctcgtcgctt tggggcagca cactctgaca
     4321 tggctggcat tctaatcatt gcgcacgctc cgttcgcttc ggcgttacgt gagtgcattt
     4381 cccacattta cggcggtttg cccgctcgca tcggtgcaat cgatgtgaag ccggattgcg
     4441 atcccgtcga agtccgcgcg tttgcacgct ccgaaatcga ccgtctgaag gaagaaaacg
     4501 gtgcgatcgt cctcacggac gtgttcggcg caacgcctgc gaatatcgcg caaagcctgg
     4561 caagcggcaa tgttcgtgtg ctcgccggcg tcaatctgcc aatgctcgtg cgcgcggtct
     4621 gctacaggac cacgccgctc gacacgctgg cggaaaagtc gctgcagggg ggatcgaagg
     4681 gcattcagga actcgatgcc tcgacgcccg tcaacccttg cgcaatcgcc agtgcggccg
     4741 ccgctgctgc cgttaccagt tgcgctgtgg gcgctgccgc taccagttgc atgcccgcca
     4801 aggtggcaag tcactgagtc gcgtccgggc tgttgagttg ccctgctggc agcacgttga
     4861 aaagttagtt aaaaaagcat tgacccagct gcatcgtgtc agccctctca cttagcgccc
     4921 ggagcatcat gctgcaacag gaaacaacta tcgtgaacaa gctggggctg cacgcgcgtg
     4981 cttcggccaa gctcacacaa ctggcaggaa attttcaatg cgagatctgg atgagccgca
     5041 acggccgtcg gatcaatgcg aaaagcatca tgggcgtgat gatgctcgca gcgggaatcg
     5101 gcagcacggt gacgatcgaa accgaaggct ccgacgaagc cgaagcaatg aagggcatcc
     5161 ttgcgcttat cgcagataaa tttggcgaag gacaatgacg ttgtcctgcc tgcagcactg
     5221 aaaaaagccg cgcatcgacg cggctttttt gtgtcctttt ttgtgtctgt acgcattgca
     5281 ccgacatgag cgacacgcac gtgaatgacg ctgacacacc gtgcaataaa aaacgtcagt
     5341 ttgtgacaga aagttgctgc accgcaaagg gtgccggatc gcgttcgaat ttataatggt
     5401 gtgcggactc gcatcgccag ccggtggtcg acaaaaccgt gagacatcca taactagaga
     5461 gaggtgcgcg tgtcgttcac gctgcatgga attcctgttt cgcgtggtat cgccatcggc
     5521 cgcgcgtatc tgatcgcggc cgcagcactc gatgtcgatc actatctggt cgagccggat
     5581 cacattgacc ttgaaattga acgctttcac acagcgcagg cacaggtgca cgcggagctg
     5641 gacgctctgc gcgacgatct ggccgcggat gcccccagcg agatgggcgc gtttatcaac
     5701 gtccactcca tgatcctgaa cgacgccatg ctcgttcacg aaacaatcga tctcgtgcgt
     5761 acgcgccgct acaacgtgga gtgggcgctg accgagcagc ttgaaatcct gagccggcat
     5821 ttcgacgata tcgaaga
//
LOCUS       DATGBK010000178         1594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_117896, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000178 DATGBK010000000
VERSION     DATGBK010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117896"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VKJ77_02600"
     CDS             <1..388
                     /locus_tag="VKJ77_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2242 domain-containing protein"
                     /protein_id="HMC44196.1"
                     /translation="SSLSLPIRSNSDSMVKISSETVPAGKFYERFFSLVGHYLKTVPL
                     SSPIPGENVSSQALAPSLILNSPDLTPIPIVVQTPAASSAARATLNADAANAASTANA
                     VSAASATTVTAATPASAPAAASATTP"
     gene            complement(607..>1594)
                     /locus_tag="VKJ77_02605"
     CDS             complement(607..>1594)
                     /locus_tag="VKJ77_02605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005615 - extracellular space [Evidence
                     IEA];
                     GO_function: GO:0047989 - hydroxybutyrate-dimer hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019605 - butyrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-hydroxybutyrate oligomer hydrolase family
                     protein"
                     /protein_id="HMC44197.1"
                     /translation="QPCAALARAAAGAPYLSALPVATTASIRAARCASLAVNGVITGG
                     DVISQATDALAQLHQAGYQTDSDFLQAPMWDSQAVSAVAVTYANAYTQSSVADNLCNF
                     SFGTTNAVTVAAGVGPVVSPMLTVFGNGNGVPPTNGINLVYNVGNSGAADHRFATADA
                     SFAGAFCLRGLWKNGDARMTASVNAIRVNANLHGKPAIIVQGRSDALVPINHASRPYA
                     AMNKLAEGNSSNLSFYEVTNGQHFDAFLSVAGFDTRFVPLHYYNLQALNLMWAHLRNG
                     APLPPSQVVHTTPRGGTAGAAPALSVNNLPAISASPGANAITFGGGGVNVPN"
BASE COUNT          298 a          558 c          464 g          274 t
ORIGIN      
        1 cagctcgctc tcgctgccga tccgctcgaa cagcgattcg atggtgaaga tttccagcga
       61 aaccgtgccg gcaggcaagt tctacgagcg cttttttagt ctggtcggac attatttgaa
      121 aaccgtgccg ctcagttcgc ccattcccgg cgagaacgtc agcagccagg cgctcgcgcc
      181 gtcgctgatc ctgaattcgc cggacctcac gccaatacct atcgtcgtgc agacgccggc
      241 cgcgagttca gccgctcgcg caacgttgaa cgcggatgcc gctaatgctg catcaacggc
      301 gaatgctgtt tcagccgcca gtgccacgac ggtgacagcg gctaccccgg cttccgcgcc
      361 ggcggccgca tcggcgacca cgccttaagc gctcgaacgt agcagccgtg cggtgcggtc
      421 attctgcagc catctacgca cccgtggtcg ccacgtaatc aatcgaagag agcggcgtat
      481 ccaatacttg cagttggcga cgcgccaact gccgcccatt cagccgccgc gctccgatca
      541 accgaagatc gcacccatcc gataccctcg ccggccggcc tttgatcggc gaaatcaaga
      601 cccccttcag ttcggcacat tcactccgcc accgccgaag gtgatcgcat tcgccccggg
      661 cgacgccgag atcgccggca aattgttcac cgacaaagcc ggcgccgccc ccgccgtacc
      721 gccccgcggc gtcgtatgca cgacctgcga cggcggcaac ggcgctccgt tcctcaaatg
      781 cgcccacatc aggttcagcg cctgcaggtt gtagtaatgc agcggcacga agcgcgtatc
      841 gaagcccgcg acgctcagga acgcatcgaa atgctggccg ttcgtcacct cgtaaaacga
      901 caaattgctt gaattgccct cggccagctt gttcatcgcg gcgtacgggc gcgacgcgtg
      961 gttgatcggc acgagcgcat ccgagcgccc ctgcacaatg atcgccggct tcccgtgcag
     1021 attcgcattc acccggatcg cattgacact cgcggtcatc cgcgcgtcgc cgttcttcca
     1081 caagccacgc agacaaaacg cgcccgcgaa actggcgtct gcggtggcga atcgatggtc
     1141 cgccgcgccc gaattcccca cgttgtagac gagattgata ccgttggtcg gcggcacgcc
     1201 atttccattg ccgaacacgg tcagcatggg cgataccacc gggccgactc cggccgccac
     1261 cgtcacggca ttggtcgtgc cgaaactgaa gttgcagagg ttatcggcga cgctcgactg
     1321 tgtgtacgcg ttggcgtacg tcacggcaac cgctgacacg gcctgcgaat cccacatcgg
     1381 cgcctgcagg aagtcagagt ccgtctgata accggcctga tgcagttggg cgagcgcatc
     1441 ggtggcctgg ctgatcacgt cgcccccggt aatcacgccg ttcactgcca gcgacgcgca
     1501 gcgcgccgcc cggatcgacg cggtcgtggc cacaggcaac gccgagagat aaggcgcgcc
     1561 cgctgcggcc cgcgccagcg ctgcgcaggg ctgc
//
LOCUS       DATGBK010000179         1882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_326133, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000179 DATGBK010000000
VERSION     DATGBK010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326133"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..689
                     /gene="pstS"
                     /locus_tag="VKJ77_02610"
     CDS             <1..689
                     /gene="pstS"
                     /locus_tag="VKJ77_02610"
                     /inference="COORDINATES: protein motif:HMM:TIGR00975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HMC44198.1"
                     /translation="DGPVLAAIYTGEIRNWDAPQIAALNRGVALPHNPIVPIHRAEGS
                     GDTFVFTQFLSFSTPNWESSQGYGTSISWPTVSGSTTATGNAGMVQALQATPYSIGYV
                     GVSFTDKLAAAHLGTAALKNGAGEFVTPSKDTITAGAASLGPRTPADERLSLVFAPAS
                     GAYPLVNYEYAVVSTKQPDPTTAAALRRFLLWSIVPSETNEAYLDTVHFIPLPPHTWE
                     LSQAQVQSIK"
     gene            complement(1295..1882)
                     /locus_tag="VKJ77_02615"
                     /pseudo
     CDS             complement(1295..1882)
                     /locus_tag="VKJ77_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093738.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
BASE COUNT          357 a          587 c          572 g          366 t
ORIGIN      
        1 tggacgggcc ggtgctcgcc gccatctata ccggcgagat ccgcaactgg gatgcgccgc
       61 agatcgccgc gctcaaccgg ggcgtggcgt tgccgcataa tccgatcgtg ccgatccatc
      121 gggctgaagg ctctggagac accttcgtgt tcacccagtt cctgtcgttc tcgacgccga
      181 actgggaaag cagccaggga tacggcacgt ccatctcatg gccgaccgtg tcgggcagta
      241 cgaccgcaac ggggaacgca ggcatggtgc aggcgctgca agcgacgccc tactcgatcg
      301 gttatgtcgg cgtcagtttt actgacaagc tggccgccgc gcatctgggc accgccgccc
      361 tcaagaatgg agcaggcgag tttgtcacgc cgagcaaaga cacgatcacg gccggcgccg
      421 cttcgctcgg tccgcgcacg ccggctgacg aacgcctgag ccttgtgttc gcgccggcat
      481 cgggcgctta cccgctcgtc aattacgagt acgcggtcgt ttcgacgaaa cagcctgacc
      541 ccacgaccgc tgccgcgctg cgcaggttcc tgctttggtc gatcgtgccg tccgagacca
      601 atgaggcata cctcgatacc gtgcacttca ttccgctccc accgcatacg tgggaattga
      661 gccaggcgca ggtccagtcg atcaagtaag cgctgttcac gcggaatttt ccagcgggcg
      721 cgggaacgcg gttcgttgtc gtgtgccgcc ttcgctgcgg gatcgctgta acagcgctgc
      781 gcaatgtgcg caaccatcca tcacaagaaa agtgccggca tccggacaac gcactaggat
      841 ctagtgcgtt gtccgaaaca accgggtcaa actaaatcaa tcagtggccg ctgtgcaggt
      901 gcgctgcctt cttggccgcg tgttcagcgt gctcgcccgc gtgcaacccg tgaccatgcg
      961 ccaggtgggc atggtggctc gcactctcgt ggtcgccggc ttaggcgtgc ttggctgctt
     1021 cgcgatgatg cttcgcggcc gaatcaaggt gcttggctgc ttcgtgatga tggtgatgaa
     1081 cttcgtgttg atcgctcatg gaagtctcca gtatctgcaa cggggctcaa tccacaatag
     1141 gagtgagcgt caccacgata gtgaagtgcg gtgtcacttg cgtgaacgcg atcgggcaat
     1201 cgcaaaggcg ctgtaactgg agattacgag gcacgtttgc catgcgttcg atccgacgaa
     1261 aaccgcacgc gttacgcgcg tcgcgcaccc accaggcgta gcgtgcaaga aacatatcgg
     1321 cggcggattc cgctacttgc ttttgttcag ccttgttgag gggccgctgc cccattgtca
     1381 cctgcggcca gaaagcaaac gccttgacga gagcctgcaa ctgctgcgag gcgaacacgg
     1441 gatccgatgt cttgagccgg ccatcagcag tggctgcacg tatccacacg gtcaggtctt
     1501 cttcgcgctc acccatgcgg gccaccatgt cgcgtgcacg ctccggcgaa tggatgcctg
     1561 ccgcgatcgc cacgcgcgcg agcgacagga acgcttcgtt gttcagaaga ctcagctttt
     1621 tcaacagcaa ctgcagcaac tgtgcgcgca acggctcaga gccggaataa gcgggcgcct
     1681 ctcccgagtc gctcgagtcc cacaactgcc gcatgatggc ggcgaacagc gcttccttac
     1741 ttggaaaatg gttgtagacc gtgcgcttcg atacccccgc gcgggctgcg atgcggtcca
     1801 tgctggttgc atcgaaaccc gccgcgagaa attcttcaat agccgcagcg atcacggcag
     1861 cgcgcttgcg atcggtcagg cg
//
LOCUS       DATGBK010000180         2030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_210270, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000180 DATGBK010000000
VERSION     DATGBK010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210270"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VKJ77_02620"
     CDS             <1..309
                     /locus_tag="VKJ77_02620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011857943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44199.1"
                     /translation="GITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV
                     IVGRLIPAGTGLAFHKARKSRELSDRQRFDQIAAEESFDFGTPEAAPVAPAEQQHPAE
                     "
     gene            502..>2030
                     /gene="recQ"
                     /locus_tag="VKJ77_02625"
     CDS             502..>2030
                     /gene="recQ"
                     /locus_tag="VKJ77_02625"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HMC44200.1"
                     /translation="MSRSLEILKEVFGYPVFRGQQGDIVDHVAAGGDSLVLMPTGGGK
                     SLCYQIPALLRREAGFGAGIVVSPLIALMQDQVAALSEVGVRAACLNSTLTGAEAAAT
                     ERALRNGEIDLLYVAPERLMTPRFLELIESVRIGLFAIDEAHCVSQWGHDFRPEYIQL
                     SVLHERFPSVPRIALTATADAITRDEIVHRLALDDARIFVSSFDRPNIRYRIVEKDNA
                     RAQLLDFIRAEHTNPDKTTDAGVIYCLSRRKVEETADWLKSQGVRALPYHAGMEYEVR
                     QRHQEMFKREEGIVMCATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMP
                     ANAWMAYGLGDVVQQRKMIDESDTDDTHKRVQGGKLDALLGLCEAASCRRVRLLGYFG
                     EASEPCGNCDTCLEPPESWDATREAQMALSCVYRAYKASGFHFGAGHLIDILRGSRSE
                     KLLQRGHEKLSTFGLGAALSEQEWRAVFRQLVAFGYLAVDHDGFGALILTEASKAVLK
                     G"
BASE COUNT          372 a          554 c          662 g          442 t
ORIGIN      
        1 ggtattacga aggcatcgct ctcgaccgat tcgttcatct cggcagcttc gttccaggaa
       61 acgacgcgcg tgttgaccga agcggccatc atgggcaagc gcgacgattt gcgcggtctg
      121 aaggaaaacg tgatcgtcgg ccggttgatt ccggctggta caggtctcgc gttccacaag
      181 gcacgcaaga gccgggagtt gtcggatcgt caacgcttcg accagattgc agcggaagaa
      241 tcgttcgatt tcggcacgcc cgaagccgca cctgtcgcac ctgcagaaca gcagcatccg
      301 gcggagtaag tcctggagtg cgggcctttt tacaggttcg ggctttagca actgatctgc
      361 tagtacaaga agccgtccgg gttataccgg gcggcttttt tttgctctat cgattggcta
      421 acgttgagtc atgcggccgc cttggggccg cgtcgttggt aaaatcgggg cactcacgct
      481 ctggcgcact ccgtcttccc catgtcccgt tcgctcgaaa ttctcaagga agtatttggc
      541 taccccgttt tccgggggca gcagggcgat atcgttgatc atgtggctgc cggcggggat
      601 tcacttgtat tgatgccaac gggcggcggc aagtcgctgt gttatcagat tcccgccttg
      661 ttgaggcgtg aagccggttt cggcgccggg atcgtcgtgt cgccgttgat cgcgttgatg
      721 caggatcagg tggccgcgtt gagcgaagtc ggtgtgcgtg ctgcgtgcct gaattcgacg
      781 ctcacgggcg ccgaagccgc tgcaactgag cgcgcgttgc gtaacgggga aatcgacctg
      841 ctgtatgtcg ctccggaacg gctgatgact ccccgtttcc tcgaactgat cgagagtgtg
      901 cgtattggtt tgttcgccat cgacgaagcg cattgcgtgt cgcaatgggg gcacgatttc
      961 cggccggaat atatccagtt gtcggtgctg catgagcggt ttccatcggt accgcggatc
     1021 gcgttgacgg cgaccgccga cgccattacg cgcgatgaaa tcgtgcatcg cctggctttg
     1081 gatgatgcgc gtatttttgt ctccagcttt gaccggccga acatccggta tcggatcgtg
     1141 gagaaagata acgcgcgggc gcaattgctc gatttcattc gcgccgagca tacgaacccg
     1201 gacaaaacca ctgacgccgg cgtgatctat tgcctgtcgc gccgcaaggt tgaagagact
     1261 gccgactggc tcaagagcca gggcgtgcgt gcgctgccgt atcacgcggg catggagtac
     1321 gaggtccgtc agcggcacca ggaaatgttc aagcgcgaag agggcatcgt gatgtgcgcg
     1381 accatcgctt tcggcatggg tatcgacaag ccggacgtgc gctttgtcgc gcacttggat
     1441 ttacccaaga gcgtggaagg ttattaccag gaaaccgggc gcgcgggccg tgacggtatg
     1501 ccggcgaacg cgtggatggc gtacggcctc ggtgacgtgg tgcagcagcg caagatgatc
     1561 gacgaatcgg acacggacga tacccacaaa cgcgtgcagg gtggcaagct cgacgcgctg
     1621 cttgggctct gcgaagcggc gtcgtgccgg cgtgtgcgtt tgctcggcta ctttggcgag
     1681 gccagtgagc catgcggtaa ttgcgatacc tgcctcgagc cgcctgaatc gtgggacgcc
     1741 actcgtgagg cgcagatggc gctttcgtgc gtctaccgcg cgtataaagc cagtggtttc
     1801 catttcggcg ctggccacct gatcgatatc ctgcgtggca gccggtccga gaaattgctt
     1861 caacgcggtc acgaaaaatt gtccacgttc ggacttggcg ctgcactgtc agagcaggag
     1921 tggcgcgcag tgtttcgcca attggtggcg ttcggctatc tggcggtcga ccatgacggc
     1981 ttcggcgcgc tgattctcac tgaggcaagc aaggcggtgc tcaagggcga
//
LOCUS       DATGBK010000181         2448 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_141147, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000181 DATGBK010000000
VERSION     DATGBK010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141147"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VKJ77_02630"
     CDS             <1..359
                     /locus_tag="VKJ77_02630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HMC44201.1"
                     /translation="AVKLGALVFIIFLPTQFAIDLQLLGGVWILQTFPAVVFSLYTRW
                     LKLPALFIGWLAGIGLGTTLAFMQGIKPIYALHLGDATYPVYIGVLALAVNIVLTVVL
                     SAVLPAKSASLTRSQA"
     gene            complement(394..1290)
                     /locus_tag="VKJ77_02635"
     CDS             complement(394..1290)
                     /locus_tag="VKJ77_02635"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC44202.1"
                     /translation="MSAGDVSALPGLHAETFDTSLRERLLDPRSRPRSGEVTLYWLGQ
                     AGFVIEFNRFRMLIDPYLSDSLAEKYRGTKFPHTRMMAAPIVPDELDRLDVVLCTHRH
                     TDHMDPGTLQPLARRFPQARFVVPAAVIDEAVKRCGVGIDRLIAVNAGGRTEILDDCF
                     VSPIASAHETLDLDSSGNYPWLGYVIDAGGVRLYHSGDCIPYPGLEEAVAAHAPHVAL
                     LPVNGRDAQRSGNGVPGNFTLDEAVTLARNCSARAMIAHHHGLFDFNTISGDTIDRRI
                     ALEKANGFEMFRAQQGHGWRLR"
     gene            complement(1277..2050)
                     /locus_tag="VKJ77_02640"
     CDS             complement(1277..2050)
                     /locus_tag="VKJ77_02640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC44203.1"
                     /translation="MYLDKFKLTGKIAVVTGAARGIGLATAEALAEAGALVVLTDMNA
                     DLLAKAAETLAVKGFRVDTELFDVTDSGAAQRVNDAVVARHGRVDVLVNNAGIAISNH
                     PAETMTDEIWNKVIDVNLNGVFWACRAFGKGMLERGAGSIVNVGSMSGFIVNRPQEQV
                     NYNASKAAVHHLTKSLAAEWGARGVRVNAVAPTYIDTEMNTYVYQDKEKLQHWVGGTP
                     MNRMGRVDEVASVILFLASDAASLMTGSIVLADGGYVCW"
     gene            complement(2061..>2448)
                     /locus_tag="VKJ77_02645"
     CDS             complement(2061..>2448)
                     /locus_tag="VKJ77_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HMC44204.1"
                     /translation="PCEYIVAPNAEDNDAVLQHLSPGALVINATGLGKDAPGSPLSDA
                     AVFPERAVVWDLNYRGNLVFLDQARAQETARALQIEDGWTYFIYGWTRVIAEVFHVDI
                     PVRGPEFDEISRIAAQAGKPAPAQPV"
BASE COUNT          499 a          794 c          671 g          484 t
ORIGIN      
        1 tggccgtgaa gttgggcgcg cttgtattca tcattttcct gccgacgcag ttcgcaattg
       61 acctgcaatt gcttggcggc gtctggatcc tgcagacgtt tcccgccgtc gtgttttcgc
      121 tctatacgcg ctggctcaag ctgcccgcac tgtttattgg gtggcttgcg ggtatcgggt
      181 tggggaccac gctcgcgttc atgcagggca tcaagcccat ttacgcgctt catctgggtg
      241 acgcaacgta tccggtttat atcggcgtgc tcgcactggc agtcaatatt gtcttgaccg
      301 tcgtactgtc ggctgtgttg cctgcgaaaa gcgcttctct gacccggtct caagcctaaa
      361 aaccgaccac tggcgcgagc ggaaaccaac gtgttaccgc aagcgccagc cgtgcccctg
      421 ctgagcgcga aacatctcaa agccattggc tttctcaagc gcgatgcgac ggtcgatcgt
      481 atcgcccgag atcgtgttga aatcaaacaa gccatggtga tgcgcgatca tcgcgcgggc
      541 gctgcagttg cgcgccaacg tcaccgcttc gtcaagcgtg aagttgcccg gcacgccatt
      601 gccgctacgc tgcgcatcgc gtccattgac cggcaacaac gcaacatgcg gggcatgcgc
      661 agcgaccgct tcctcaaggc ccggatacgg gatgcaatcg cccgaatgat acaaacgaac
      721 gccccctgca tcgatcacat aaccgagcca cggatagttg ccacttgagt ccaggtccag
      781 cgtctcgtgc gcagaggcta tcggcgaaac gaaacaatcg tccagaatct ccgtccggcc
      841 gcccgcattc accgcgatca ggcgatcgat gccaacaccg catcgtttga cggcttcatc
      901 gattaccgcc gcaggtacga cgaaacgcgc ttgcggaaat ctccgcgcca gcggctgcaa
      961 cgtgcccggg tccatgtgat ccgtatgccg atgcgtgcac agcacgacat ccagcctgtc
     1021 cagttcatcg ggcacgatgg gcgcagccat catcctcgtg tgcggaaatt tcgtacccct
     1081 gtatttctcc gcaagcgaat ccgacaggta gggatcgatc aacatcctga accggttgaa
     1141 ctcgatcaca aaacccgcct gccccaacca gtacaacgtc acttcgccag atcgaggcct
     1201 tgaacgcgga tcaagaagcc gctcgcgcaa tgacgtatca aacgtttccg catgcagccc
     1261 cggcagcgcg gaaacatcac cagcagacat aaccgccgtc ggccaggacg atcgatccgg
     1321 tcatcaggct ggctgcgtcg ctggcgagaa acagaatgac cgacgccact tcatcaacgc
     1381 gtcccatgcg gttcatcggc gtaccgccaa cccagtgctg caacttttcc ttgtcctgat
     1441 agacatacgt gttcatctcg gtgtcgatat acgtcggcgc aacggcattc acgcgcacac
     1501 cccgtgcgcc ccactccgct gccagcgact tcgtcagatg atgaaccgcc gccttcgacg
     1561 cgttgtagtt cacctgctcc tgcggccggt tgacgataaa ccccgacatg gaccccacgt
     1621 tgacaatgct gcccgcaccg cgctccagca tgcccttgcc gaacgcgcgg caagcccaga
     1681 acacaccgtt gagattgacg tcaatgacct tgttccatat ctcgtcagtc atggtttcag
     1741 ccggatgatt cgagatcgcg atgccggcgt tgttgaccag cacatctacg cggccgtggc
     1801 gcgcgacaac cgcgtcgttg acacgttggg cagctccgga gtcggtgaca tcgaatagtt
     1861 cggtatccac acggaagccc ttcaccgcca gcgtttcggc ggccttggca agcaagtcag
     1921 cgttcatgtc cgtgagaaca accagcgcgc cggcttcagc cagcgcctcg gcggtcgcga
     1981 gaccaatacc tcgcgccgcg ccggtaacaa cggcgatctt gccggtcagc ttgaacttgt
     2041 cgagatacat gcattgatcc ttaaacaggt tgagcgggcg ccggcttgcc ggcttgcgcc
     2101 gcgatccggc tgatctcgtc gaactcgggg ccgcgcaccg gaatgtcgac atgaaagact
     2161 tcggcaatca cacgggtcca gccatagatg aagtaggtcc agccgtcctc aatctgcagc
     2221 gcccgtgcgg tttcctgggc ccgcgcctga tcgaggaaaa ccaggttgcc gcgatagttc
     2281 aggtcccaca cgaccgcgcg ttccgggaat acggccgcgt cgctcaatgg cgatcccggc
     2341 gcatccttgc ccagtccggt ggcgttgatc accaacgcgc ccggagacaa atgctgcaag
     2401 acggcatcgt tatcttccgc gttcggcgca acgatatatt cgcacgga
//
LOCUS       DATGBK010000182         4573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_279625, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000182 DATGBK010000000
VERSION     DATGBK010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4573
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279625"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1426
                     /locus_tag="VKJ77_02650"
     CDS             <1..1426
                     /locus_tag="VKJ77_02650"
                     /inference="COORDINATES: protein motif:HMM:NF037521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zincin-like metallopeptidase domain-containing
                     protein"
                     /protein_id="HMC44205.1"
                     /translation="QNAEVAEDGKDAQSDGQVPSRARKPLLFYAAVFNAADIDGLPPL
                     KKDVSWQPNLLAEKLLAATGAQIENRVLVKTGGGGIVANSAHYDQIRDRIVLPPRSSF
                     GSESDWYATALHELAHWTGHSTRLDRLAADVKFGSPEYAREELRAEIASMFLSSMLGV
                     EGDVLNHARYTAHWAQVLKKDKHELFRAAKDAEAIVEHIFEYAPEIKQVCEARYDANV
                     IKEAVKKPRNDIEPMPNFIPASARKPVAPAEPSAPVVTAPAGVGRADPRWPAFETTVR
                     SEAVKYGIPEGTVVDTLALLESQFSEVMKAAGRNGFSVDEMTDMFVRRLVEEMRVNKE
                     REQQWSKYCDQVRVASDGLLTPENVELKLQEMGEQYQQILLTSGQEGWEDERIEDAVR
                     GIIYGELGRRPITAQYIREQFLSGAQPERAADDDDFLLAPTGLGGGFDDEPLLMPFSS
                     GIAFDDAVPASALAAVEDDQSPSP"
     gene            1453..2358
                     /locus_tag="VKJ77_02655"
     CDS             1453..2358
                     /locus_tag="VKJ77_02655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44206.1"
                     /translation="MNALSLEVDAHAWVRELKLEYYRVATLRSLKVGDVFWVGCFDGP
                     GVTANVMGRCEAFIERVRGGYRYCAFWTIQASAKTRRAHVMTSGKFNLLKGNVIRFAS
                     LRDVAAAKSFKLVCRYVRFVDQHDKELGYKPFTGAPEHRSTIWRCETVFASGFTRFGV
                     EGPESKGFRSIVETAIALGVVRDDGEPDADVNVGDPTVMPTEAMGSGSSAGAGMFDDV
                     QKKAIESVTKAFARSKAAGLSLDVFRGRAALFMPPREQSLAVDAVGRAVARALKAQVE
                     VRIDDESPLVVNLAKPETSAERVAY"
     gene            2387..3100
                     /locus_tag="VKJ77_02660"
     CDS             2387..3100
                     /locus_tag="VKJ77_02660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44207.1"
                     /translation="MGPVFQFDFETGLDGDAHTEVAVRMYLCEGTDIPAGMNVDAALH
                     LLRLLERYNWTLSDGGHYADRWRKFWPVITDVERALLTQVVRVHCRGRFAQPFQIGAL
                     PPSMQHAAGDRSLVKMTEQIEIEFHLLLYIGYSVLLTTGPDKPDNLRAMWSARLATCP
                     DVREGLLLAAVDEWVTGHVRIGGQHCFDLGVLLKTRLLEAGVDAQRATMLSSRFAGDV
                     FDCIQTQQDKRFEFSAHER"
     gene            3151..4047
                     /locus_tag="VKJ77_02665"
     CDS             3151..4047
                     /locus_tag="VKJ77_02665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019924555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HMC44208.1"
                     /translation="MWFKNLQVYVLPKNWAFSAADLEVALAPHKFAPCGPSELLRQGF
                     FSPRENESLVHVVNKQMLICLRSEKKLLPSSVINQVAKARAAEMEEAQGFAPGKKAMK
                     ELKERVADELMPRAFSLYSTIWAWIDPVNGWLMVDSASPSKADEIVKALLKAIDKLPL
                     ESLRVQSSPVSAMTTWLQEDDAPAGFTVDMDTELRATGESRAAVRYVRHSLEGDEVRR
                     HISAGKQCTRLAMTWDSKISFVLTESLAIKIIKPLDVITEKESSTKNDDERFDGDFML
                     MTGELSKMMGDVVESLGGFAKA"
     gene            4069..>4573
                     /locus_tag="VKJ77_02670"
     CDS             4069..>4573
                     /locus_tag="VKJ77_02670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44209.1"
                     /translation="MKTYIRREGWRVALVLDDPEVVPRERGILAAMNCLEGTGCWRLV
                     DLRLSQYRKPSRYSGDMSADVYHANIKPDSEREAVLVKSMLREYREDEDGTIRWCSFD
                     GLVRGHPEVDGYRPVSYANFDQAGYFAYAEAFAQLEEIKRWWDVYEGDPAHARIENGH
                     RQVAEGTV"
BASE COUNT          872 a         1218 c         1570 g          913 t
ORIGIN      
        1 tcagaacgcc gaggtggccg aggacggcaa ggacgcgcag agcgacgggc aggttccatc
       61 gcgcgcgcgc aaacccctgt tgttctatgc ggcggtcttc aacgccgccg atatcgacgg
      121 cctgccgccg ctgaagaaag acgtgtcgtg gcaaccgaat ctgctggcag aaaagctgct
      181 tgcagcgacc ggcgcgcaga tcgagaaccg ggtgctggtc aagaccggtg gtggcggcat
      241 cgtcgccaac agcgcgcact acgaccagat acgcgaccgt attgtgctgc cgccgcgttc
      301 gagctttggt agcgagagcg actggtacgc gactgcgctc catgagctgg cacactggac
      361 cgggcacagc acgcggctgg accggctggc ggccgatgtg aaattcggtt cgcccgagta
      421 tgcacgtgag gagctgcgcg ccgagatcgc gtcgatgttc ctgtcgtcga tgctgggcgt
      481 cgagggcgat gtgctcaacc atgcgcgcta cacggcgcac tgggcgcagg tgctcaagaa
      541 agacaagcac gagctgttcc gcgcggccaa ggacgccgag gccatcgttg agcacatctt
      601 tgaatacgcc cctgagatca agcaggtgtg cgaagcgcgc tacgacgcga acgtcatcaa
      661 ggaagctgtc aagaagccgc gcaacgacat cgagccgatg ccgaatttca tccccgccag
      721 tgctcgcaag ccggtggctc cggctgagcc gagcgcgcca gtggtgacag cgccggctgg
      781 tgtcggccgc gccgatcctc gctggccggc attcgagacc actgtgcgta gcgaggccgt
      841 caagtatggg attcctgagg gtaccgtcgt cgatacgttg gccctgctgg agtcgcagtt
      901 ctccgaggtg atgaaggcgg ccgggcgcaa tggcttctcg gtcgatgaga tgaccgatat
      961 gttcgtgcgc cgtctcgtcg aggagatgcg cgtgaacaag gaacgcgagc agcagtggtc
     1021 aaaatattgt gatcaggtgc gcgtcgcttc cgatgggctg ctgacgcctg agaacgtgga
     1081 actgaagttg caggagatgg gcgagcagta ccagcagatt ttgctgacct cgggtcaaga
     1141 gggctgggag gatgagcgca ttgaggacgc ggtgcgtgga atcatctacg gcgagctggg
     1201 gcgtcgcccg atcacggcgc agtacatccg tgagcagttc ttgtccggcg cgcagcctga
     1261 gcgcgcggct gatgacgatg attttctgct tgctccaaca gggcttggtg gtggtttcga
     1321 tgacgagccg ttgctgatgc ctttcagctc cgggatcgct tttgatgatg ccgtgccagc
     1381 gtcggccttg gccgcagtgg aagacgatca atcgccttcg ccgtaatcga aaagaaaagg
     1441 gtcgagatgg acatgaacgc actgtcgctg gaggttgacg cacacgcgtg ggtgcgtgaa
     1501 ctcaagctgg aatactaccg cgtcgccacc ttgcgcagtc tcaaggttgg cgacgtgttc
     1561 tgggtcggtt gtttcgacgg gccgggtgtt acggctaacg tgatgggccg ttgcgaggcg
     1621 tttatcgagc gcgtgcgcgg cggctatcgc tactgtgcct tctggaccat tcaggcgtct
     1681 gccaagacgc gtcgggctca tgtcatgacg agcgggaagt tcaatctgct caagggcaat
     1741 gtgatccgtt tcgcgtcgct gcgtgacgtg gcagcggcca agtcgttcaa gctggtatgc
     1801 cgctatgtcc gatttgtgga ccagcatgac aaggaactgg gctacaaacc ttttacaggc
     1861 gccccagaac atcgctccac gatctggcgt tgcgagaccg tgtttgccag cggcttcacg
     1921 cgtttcggtg tcgagggacc tgagagtaag ggcttccgct ctattgtgga aacagctatc
     1981 gcgctgggcg ttgtccggga tgacggcgag ccggatgctg acgtgaatgt cggcgaccca
     2041 accgtgatgc cgacggaggc gatgggcagc ggctccagtg cgggtgccgg tatgtttgac
     2101 gacgtccaga aaaaggcaat tgaatcggtg acgaaggctt tcgccagatc gaaggcggcc
     2161 ggtttgtcgc tcgacgtctt cagaggccgt gcggcgttgt ttatgccgcc gcgtgagcag
     2221 tcactggcgg tggacgccgt cggccgcgcg gtggcgcgcg cattgaaagc acaggtcgaa
     2281 gtgcgtattg acgacgaatc tccgctggtg gtcaatctgg ccaagccgga gacgagcgcc
     2341 gagcgcgtcg cttactgatt ggggccgtat gcaagctgag actaatttgg ggccggtatt
     2401 tcagttcgat ttcgaaaccg ggcttgatgg cgatgcccat accgaagtcg ccgtgcggat
     2461 gtatttgtgc gaaggtacgg atattcctgc tggtatgaat gtggacgcgg cactgcattt
     2521 gcttcggttg ctggagcgtt acaactggac gctgtcggac ggcggccatt acgctgaccg
     2581 gtggcgcaag ttctggcctg tcatcacgga cgtcgagcgg gctttgctga cgcaggtcgt
     2641 tcgcgtgcat tgtcgcgggc gtttcgccca gccgttccag atcggcgcgt tgccgccgtc
     2701 gatgcagcac gccgctggcg accgcagctt ggtcaagatg accgagcaga tcgagatcga
     2761 atttcacctg ctgctctaca tcgggtacag cgtgctgctc acaacagggc cagataagcc
     2821 agataatttg cgcgcgatgt ggagcgcgcg gctggccacg tgcccggacg tgcgtgaagg
     2881 gctgctgctg gcggccgtgg atgaatgggt aacagggcac gtgcgcattg gtgggcaaca
     2941 ctgctttgat ctgggcgtgt tgctgaaaac acggttgctt gaggccggtg tcgatgcgca
     3001 gcgcgcaacg atgttgagtt cgcgcttcgc aggcgacgtg ttcgattgca tccagacgca
     3061 gcaagacaaa cgtttcgagt tttccgcgca tgagcgctga agctggccgg ttctacatgg
     3121 ctgttcgcag cctcaataaa agggaatggt atgtggttta aaaacttgca ggtgtatgtg
     3181 ttgccgaaga actgggcctt tagcgccgcc gatctggaag tggcgctcgc gccgcacaag
     3241 ttcgcgccgt gcggcccgtc cgagctgttg cggcagggct ttttctcgcc acgcgagaac
     3301 gagtcgctgg tacacgtggt caacaaacag atgctgatct gcctgcgctc ggagaaaaaa
     3361 ttgctgccgt cgtcggtgat caatcaggtg gccaaggcgc gcgccgccga gatggaagag
     3421 gcgcagggtt tcgcgccggg caagaaggcg atgaaggaat taaaggagcg cgtcgccgac
     3481 gagctgatgc cgcgcgcgtt ttctctgtac tcgactattt gggcgtggat cgatccggtc
     3541 aatggctggt tgatggtcga ttcggccagt ccatcgaagg ccgacgagat cgtcaaggcg
     3601 ctgctcaagg cgatagacaa gctgccgtta gaaagcctgc gtgtgcagtc ctcgccagtc
     3661 agtgcgatga ccacatggct gcaagaggac gacgcgccag ccggttttac ggtggacatg
     3721 gacactgagc tgcgcgccac cggggagagc cgcgctgcgg tgcgttacgt gcgccatagc
     3781 ttggagggcg acgaggttcg ccgccacatc tcggccggca agcagtgcac gcggctggcc
     3841 atgacgtggg acagcaagat ttcgttcgtg ctcaccgagt cgttggcgat caagatcatc
     3901 aagccgcttg atgtgatcac cgagaaggag tcgtccacga agaacgatga cgagcgcttc
     3961 gatggtgact tcatgctcat gacgggcgag ctgtccaaga tgatgggtga cgtggtcgag
     4021 tcgctgggcg gcttcgccaa ggcatagccg acaaggcggg aggggcgcat gaaaacgtat
     4081 attcgaagag aaggctggcg tgtggcgctt gtgcttgacg atccagaggt cgtcccgcgc
     4141 gagcgcggca tcttggcggc gatgaactgc cttgaaggca ccggttgctg gcggctggtg
     4201 gaccttcgtc tgtcgcaata tcgcaagcca tctcgctact cgggcgacat gtcggctgat
     4261 gtataccacg cgaatatcaa accggattcg gagcgcgagg cggtgctggt gaagtcgatg
     4321 ttgcgcgagt atcgcgaaga cgaagacggg accatccgct ggtgctcatt cgatggtttg
     4381 gtccgtgggc atcctgaggt cgatggctat cggccggtga gctatgcgaa cttcgatcag
     4441 gcgggctatt ttgcttacgc ggaagcgttc gcgcagctcg aagagatcaa acggtggtgg
     4501 gacgtctacg agggggaccc ggcgcacgcg cggatcgaga atggtcaccg gcaagttgcg
     4561 gagggcactg tgc
//
LOCUS       DATGBK010000183         1576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_94785, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000183 DATGBK010000000
VERSION     DATGBK010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94785"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..577
                     /locus_tag="VKJ77_02675"
     CDS             <1..577
                     /locus_tag="VKJ77_02675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HMC44210.1"
                     /translation="LVGAVVLAGLSVPLLTFGPIADKMATRLQSITNLSDDNSYAARN
                     EFYASFAKTAFTDVSGEGFGATGSSTKLSSSNGDLGKYGSFDSGVMNVPFVLGWPGSL
                     MYLAGLGLLLARAFRASFSLRDDKYAQASLSVAFAIVGMLVFTNTFTSIGGMILYMGL
                     CSVLAARHHQRLARRREQALFAHTLPEKALR"
     gene            574..>1576
                     /locus_tag="VKJ77_02680"
     CDS             574..>1576
                     /locus_tag="VKJ77_02680"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC44211.1"
                     /translation="MRIAIVTHVVRHNDGQGRVNYEIARAALAEGHQVTLLASHVAPE
                     LASEARLRWVAIKVGRFWPTKLFKQQIFALKTGLWLKAHKKEYDVLHVNGFISWAKAD
                     VNTAHFVHGGWLRSPYYPFKLTGGLWSAYQVLYSHVNARLEHWAYQRSKIIAAVSEKV
                     AIEIRANGVAGERIEVVYNGVDTSAFSAARVNGADRKSFGLRDDACLLLFVGDLRTPR
                     KNLDTVLKALVQLPAHVQLVVAGYIPGSPYPDEAKALSIADRVHFLGLVKNMPTLMHS
                     VDAFVFPSRYEAMSLSLLEALAAGLPIITAKTAGGAEIIGTDCGIVLDDPDDATALAG
                     "
BASE COUNT          279 a          449 c          502 g          346 t
ORIGIN      
        1 ccttgtgggc gcagtggtgc tggcgggact ttccgtgccg ctgctgacct tcgggccgat
       61 tgcggacaag atggcgacgc gcttgcagtc catcaccaat ctcagcgatg acaacagcta
      121 cgccgcgcgc aacgagttct acgcgtcgtt cgcgaaaaca gcctttaccg acgtctccgg
      181 cgaaggtttc ggcgccaccg gttcatcgac gaaactctcc agctccaatg gcgatcttgg
      241 taaatacggc agcttcgaca gcggcgtgat gaacgtgccg ttcgtgctcg gctggcccgg
      301 ttcgctgatg tatcttgccg ggctgggctt gctgctcgcc cgtgcgttcc gtgcttcgtt
      361 ctcgctgcgc gacgacaaat acgcgcaggc ttccctgagt gttgcgtttg cgatcgtcgg
      421 catgctggtg ttcacgaaca cgttcacgtc tatcggcgga atgatccttt acatgggcct
      481 ttgctcggtc ctcgcggcgc gccatcatca gcggcttgcg cgccgccggg agcaagcgct
      541 ctttgcacac actctccctg aaaaggcact ccgatgagaa tcgccatcgt cactcatgtc
      601 gtgcgtcaca acgatgggca aggccgcgtg aactacgaga tcgcgcgcgc tgcattggcg
      661 gaaggccatc aggtcacgct gctggcatcg cacgtggcgc cggaacttgc ttccgaggcg
      721 cgcttgcgat gggtcgcgat caaggtcgga cgtttctggc cgaccaagct tttcaagcag
      781 cagatcttcg cgttgaagac ggggttgtgg ctcaaggctc acaagaagga atacgacgtg
      841 ctgcatgtga acgggtttat atcgtgggcc aaagccgacg taaataccgc gcatttcgtg
      901 catggcggct ggctgcgcag tccgtactat ccgttcaagt tgaccggcgg cttgtggtct
      961 gcgtatcagg tgttgtatag ccacgtgaat gcgcggcttg aacactgggc ctatcagcgt
     1021 tcaaagatca ttgcggcggt gtccgagaaa gtggctatcg agattcgcgc gaacggtgtg
     1081 gcgggcgagc gcatcgaggt ggtttataac ggcgtggata cgagcgcgtt cagcgcggcc
     1141 cgggtgaatg gcgccgatag aaaatcattt ggactgcgag acgatgcctg cctgttgctg
     1201 tttgttggtg acctgcgcac gccgcgcaag aacctggaca cggtgctgaa ggcgctggtg
     1261 caacttcctg cccacgtgca actggtggtg gccggctata tcccgggcag tccttatccc
     1321 gatgaagcca aggcgctgag cattgcggat cgcgtgcatt tcctggggct ggtgaagaac
     1381 atgcctacgt tgatgcattc cgtcgatgcc ttcgtgttcc catcgcgtta cgaagcgatg
     1441 agcctctcgt tgctggaagc gctcgcggcg ggtctgccga tcattaccgc gaagacggcg
     1501 ggcggggctg agattatcgg cacggactgc ggcattgtgc ttgacgatcc cgatgacgcc
     1561 accgcgctcg ctggcg
//
LOCUS       DATGBK010000184         3545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_2168, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000184 DATGBK010000000
VERSION     DATGBK010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3545
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2168"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1098)
                     /locus_tag="VKJ77_02685"
     CDS             complement(<1..1098)
                     /locus_tag="VKJ77_02685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate 3-monooxygenase"
                     /protein_id="HMC44212.1"
                     /translation="MRTQVGIIGAGPAGLLLSHLLHLRGIESVVLEARSRGDIESTIR
                     AGVLEQGTMDLLNEAGLGARMLAEGAVHHGFELAFEGQRRRIALTELTGHSITVYAQH
                     EVIKDLVAARVAADGALKFGVTDVSLHDFDDAPGSSRPRIRYRHEGFEHELECDFIMG
                     CDGSQGVARGSMPQALRHDYQRIYPFGWFGILVEAPPSAHELIYARHDRGFALISTRS
                     PNVQRMYFQCDPKDSVDAWSDDRIWSELHARVDTLDGWQITEGRIFQKNIVGMRSFVS
                     TPMQSGKLFLAGDAAHIVPPTGAKGMNLAVSDVRILTAALQAFYEEGASDKLDRYTET
                     ALKRVWRAEHFSWWMTRMLHKLDDTSPFEQRL"
     gene            1249..1549
                     /locus_tag="VKJ77_02690"
                     /pseudo
     CDS             1249..1549
                     /locus_tag="VKJ77_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067850.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            1659..2171
                     /locus_tag="VKJ77_02695"
     CDS             1659..2171
                     /locus_tag="VKJ77_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC44213.1"
                     /translation="MPFTIRRLTAADAGAYRDVRLEGLARHPDGFGSAWEDEAEQPLA
                     LFEQRIVNAAVFGGFLGNENELAGVAGLIVPQGAKLRHKGVLMGMYVRPAARGTGMAL
                     ALVQAVLSHARTVVEEVQLTVAPHNEAAQRLYRSVGFVEYAREPRSLKIDGKYQEAAL
                     MTLPFERVAN"
     gene            complement(2180..3226)
                     /locus_tag="VKJ77_02700"
     CDS             complement(2180..3226)
                     /locus_tag="VKJ77_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC44214.1"
                     /translation="MRNRKFGNTGLFVSELCLGTMTFGEGGIWTNIGGLQQADADKLL
                     GRALDAGINFIDTADVYADGTSEIMTGQALKNLKVPRENVVVASKIHGETGTKGINSR
                     GASRYHIIDGVKASLKRLQLDHIDLYQLHGFDTATPIEEALRALDTLVQHGHVRYIGV
                     SNWAAWQITKALGISERLGLARFESLQAYYTIAGRDLEREIVPMLKSENLGLMVWSPL
                     AGGLLSGKYKRDGSSTEPGRRTNFSFPPVDMDRAFDCIDAMTQMAEAKGVTVAQIALA
                     WLLHQKVVTSVIVGAKRVGQLDDNIAATQVKLNGDELAALDEVSQLAQEYPGWMFARQ
                     GEYRLKQLQESSGG"
     gene            3334..3477
                     /locus_tag="VKJ77_02705"
     CDS             3334..3477
                     /locus_tag="VKJ77_02705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44215.1"
                     /translation="MKQYLPVPLRPASLILSDHCPILQRPHVSLGENTRARVSWVPFA
                     GSV"
BASE COUNT          658 a         1056 c         1098 g          733 t
ORIGIN      
        1 caggcgttgt tcgaacggcg aggtgtcgtc gagcttgtgc agcatccggg tcatccacca
       61 cgagaaatgc tccgcgcgcc agacgcgctt cagggcagtt tcggtgtagc ggtccagttt
      121 gtcgctcgcg ccttcttcgt agaatgcttg caaggcggcg gtcaggatac ggacgtccga
      181 caccgccagg ttcatgcctt tggctccggt gggcgggaca atgtgcgcgg cgtcgccggc
      241 gaggaacagc ttgccggatt gcatcggcgt ggagacgaaa ctgcgcatgc cgacaatgtt
      301 tttctggaag atccgccctt cggtaatctg ccagccgtcc agcgtgtcca cgcgtgcgtg
      361 gagttcggac cagattcggt cgtcggacca ggcatccact gagtctttcg ggtcgcactg
      421 gaaatacatg cgctgcacgt ttggcgaacg ggtgctgata agcgcaaaac cgcgatcgtg
      481 gcgagcgtaa atcagctcgt gcgccgaagg cggcgcttcg accaggatcc cgaaccagcc
      541 gaacggatag atgcgctgat agtcatgcct cagcgcctgg ggcattgacc cgcgcgcgac
      601 cccttgcgag ccgtcgcaac ccatgatgaa gtcgcactcc agttcgtgtt cgaacccttc
      661 gtgcctatac cggatgcgcg gccgtgagct cccaggggca tcgtcgaagt cgtgaagcga
      721 cacgtcggtc acgccgaatt tcaatgcacc gtcggcggct acgcgcgcgg cgaccagatc
      781 cttgatgact tcgtgctgcg cgtagacggt gatcgagtgg ccggtaagtt cggtcagtgc
      841 aatgcgccgg cgttggcctt caaacgcgag ttcgaaaccg tgatgcaccg caccttcggc
      901 cagcatccgc gcgccgagtc ccgcttcgtt cagcaggtcc atcgtgcctt gttcgagaac
      961 gcctgcacga atggtggatt cgatatcgcc gcggctgcgt gcctcgagca cgaccgattc
     1021 aataccgcga agatggagaa gatgggagag caggaggccc gcaggacccg caccaatgat
     1081 gccgacttgt gtacgcatga atgtctccgt aatgcgtgtt gattttgtgg acacagtctt
     1141 gcgcactggc ggggtatcgc gcaacgcgat accgtggata ggctatatct tgaatgtgga
     1201 taaaggtcgc caggcggttt tgtgagggaa cgactagaaa ttcgggtcca tgctggcctg
     1261 atggcgtatt ccacaacgaa acgcgccatc cagaatttta cgggtggctt tgcgcagttg
     1321 ctggcgcaga aaggcattcg cgcaaacggc gtgacggggg ccgatctgga cgcggctgat
     1381 tccatcgcct atgaagccgg agcaggttaa gaactttggc tcgcaagtgc cgatgaaacg
     1441 cccggggcag ccggccgaag tggcggcgta tgtgatgccg gcatcggatg caagcggtta
     1501 tttctcccgc gcgacgatcg tggtgacagg cggcaagccg atcatctaga cgggaggctt
     1561 gggcaatccg gcttggagcg gacacgccgc gcgtgcgaaa ctcgtgctct cacgctagca
     1621 atgacgacac gtcgctcaag gtacccacgc tcatgcccat gccattcacc atccgccgtc
     1681 tgactgccgc cgacgccggt gcgtatcgcg atgtcaggct cgaaggtctc gcccgacacc
     1741 ccgatggttt cgggtcggcg tgggaagacg aagctgaaca gcctctcgcg ttgttcgagc
     1801 aaaggatcgt taatgccgcg gtattcggcg ggtttttagg caacgaaaac gagttggccg
     1861 gcgtcgctgg cctgatagtg ccgcaaggcg cgaagctgcg ccacaagggc gtgctgatgg
     1921 gcatgtacgt acgcccggcc gctcgcggga ccggaatggc gcttgccctt gtgcaagcgg
     1981 ttctcagcca cgcacgcacc gtggtcgaag aggttcaact gacggttgcg ccgcataacg
     2041 aagcggcgca acgcctgtat cgctcggtgg gatttgttga gtacgcgcgt gaaccgcgtt
     2101 cgctgaaaat agacggcaag tatcaggagg ccgcgctcat gaccttaccg ttcgaacgtg
     2161 tcgctaatta atcaaccgac tagccgccgc tcgattcttg cagttgtttc aatcgatact
     2221 caccctgccg cgcgaacatc cagcccggat attcttgagc gagctggctg acttcatcga
     2281 gtgcggcgag ttcgtcgccg ttcagcttca cttgtgtcgc cgcgatgttg tcgtcgagtt
     2341 gcccgacccg cttcgcgccg acaatcacgc tcgtcaccac cttctggtgc agcagccacg
     2401 ccagcgcgat ttgcgccacg gtcacgcctt tggcttcggc catctgggtc atggcgtcga
     2461 tgcagtcaaa cgcgcgatcc atgtccaccg gcggaaacga gaagttcgtg cgccggcccg
     2521 gttccgtcga actgccgtcg cgcttgtatt tgccgctcag caaaccgccc gcgagtggac
     2581 tccagaccat caggcctagg ttttcgctct tgagcatcgg cacgatttca cgttcgaggt
     2641 cgcgcccggc aatcgtgtaa tacgcctgta gcgactcgaa acgagcgagg ccgagccgct
     2701 ccgaaatacc gagcgccttg gtgatctgcc acgccgccca gttcgatacg ccgatatacc
     2761 ggacatggcc gtgctgcacg agggtgtcga gtgcccgcaa cgcttcttct attggcgtag
     2821 cggtatcgaa gccatgtagc tgatacaaat cgatgtgatc gagttgcagg cgtttcaagc
     2881 tcgccttgac gccgtcaatg atgtgatacc gcgacgcacc gcgcgaattg atgcctttcg
     2941 tgccggtttc gccgtggatc ttgctggcga ccaccacgtt ttcgcggggc actttcaggt
     3001 tcttgagcgc ctggccggtc atgatctccg acgtgccgtc ggcgtagacg tcggcggtgt
     3061 cgatgaagtt gatgcccgca tccagtgcgc ggccgaggag tttgtccgcg tccgcctgtt
     3121 gcaggccgcc aatgttggtc cagatgccgc cctcgccgaa agtcatggtg ccgaggcaca
     3181 attccgaaac gaacaagccg gtattgccga attttctgtt acgcatgctg ggtcccttag
     3241 atttcatcct gaactggcgg ccggcaggtt tcgccttcgg ccgcttcgcg acggaacgcc
     3301 cgaacgcccg ctcggtgttt cagcaacgcc gcgatgaagc agtatctgcc tgtgccgctt
     3361 cgcccggcta gcctgatcct gtcggatcat tgcccgatcc tgcaaaggcc gcacgtatcg
     3421 ctgggcgaaa acacgcgggc gcgagtaagc tgggtgccat tcgccggcag tgtgtgattg
     3481 gccctggctt gatcgcattg gcatctgact gacggcaacc cttctccatc cttgcaagac
     3541 tgcag
//
LOCUS       DATGBK010000185         1583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_279712, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000185 DATGBK010000000
VERSION     DATGBK010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279712"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..679
                     /locus_tag="VKJ77_02710"
     CDS             <1..679
                     /locus_tag="VKJ77_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HMC44216.1"
                     /translation="VTLKIRTGWNRENKNALNIARIAQDAGISMLTVHGRTRADLYKG
                     DAEYETIAAVKASVRIPVVANGDIATPEKARHVLAITGADAIMIGRAAQGRPWLFREI
                     EHFLATGEHLPAPRIDEIQQLMNEHLEDHYDFYGEFTGVRTARKHIGWYTRGLSGANT
                     FRHRMNTLDSTREQLLAVNEFFDAQKALSDRLVYVEELDAESDRGGNDEAEESCGTQN
                     HTDRLAA"
     gene            676..909
                     /locus_tag="VKJ77_02715"
     CDS             676..909
                     /locus_tag="VKJ77_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013436270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HMC44217.1"
                     /translation="MSRHHIEQCVRQSLDNYFQDLDGSKPHDVYEMVISCVEKPMLEV
                     VLKQAEGNQSLAAEFLGINRNTLRKKLQQHGLI"
     gene            1006..>1583
                     /gene="purH"
                     /locus_tag="VKJ77_02720"
     CDS             1006..>1583
                     /gene="purH"
                     /locus_tag="VKJ77_02720"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069295.1"
                     /note="involved in de novo purine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HMC44218.1"
                     /translation="MIKQALLSVSDKSGIVEFAKSLSELGVSLLSTGGTAKLLADAGL
                     PVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRDLPEHMAALEQHDIPTIDLLVVNL
                     YPFVQTVSKEECSLEDAIENIDIGGPTMLRSAAKNHRDVTVIVDPSDYAIVLDEMRSA
                     KNTVSYATNFKLATKVFAHTAQYDGAITNYLT"
BASE COUNT          369 a          485 c          436 g          293 t
ORIGIN      
        1 cgtcacgctg aagatccgca cgggctggaa tcgcgagaac aagaatgcgc tcaacattgc
       61 gcgcattgca caggacgcgg gcatttccat gctgaccgtg cacggccgca cccgcgccga
      121 tctctacaag ggcgacgcag aatacgagac cattgccgcc gtcaaagctt ccgtgcgcat
      181 tccggtggtg gcgaacggcg acatcgccac gcccgaaaaa gcgcgtcacg tgctggccat
      241 caccggcgcg gacgcgatca tgattggccg tgccgcgcag gggcgcccgt ggctctttcg
      301 cgagatcgaa cactttttgg caacgggcga acatttgccc gcgccgcgta tcgacgagat
      361 ccagcaactg atgaatgagc atctcgaaga tcactatgat ttctatggcg aattcacggg
      421 cgttcgtaca gcgcgcaaac acatcggctg gtacactcgc ggcctttccg gcgccaacac
      481 gttcagacat cggatgaaca cgctggattc cacacgcgaa caattgctcg ccgtgaacga
      541 attcttcgac gcccaaaagg cgttgtccga ccgtctcgtc tatgtcgaag aactcgacgc
      601 agagagcgac cgcggcggca acgacgaagc cgaagaatcg tgcggcacgc agaaccacac
      661 agaccgacta gccgcatgag tagacatcac atagaacaat gcgtccgcca gagcctggac
      721 aactatttcc aggacctgga cggttccaag ccgcacgacg tctacgagat ggtgatttcg
      781 tgcgtcgaga aacccatgct ggaagttgtg ctgaagcaag ccgagggcaa ccagtcgctc
      841 gcggccgagt ttctcggcat taaccgcaac acgctgcgca agaagctgca acaacacgga
      901 cttatttaaa gcagttgttt taatccggac cgtcgcggcg tacggcggtc gactcgaatt
      961 tcctgattcc cctcgactcc cctaccggct cccgccgttc ccatcatgat caagcaagcg
     1021 ctcctttccg tttccgacaa gtcaggcatc gtcgaatttg cgaaatcgct gtcggagcta
     1081 ggcgttagcc tgctctcgac tggcggcacc gcaaaactcc tcgccgatgc aggtctgcct
     1141 gtcaccgaag tcgccgacta caccggtttc ccggagatgc tcgacggccg cgtgaaaacg
     1201 ctgcatccga aggttcacgg tggcattctg gcgcgccgtg atctgccgga acacatggca
     1261 gcgctagagc aacacgacat tccgaccatc gacctgctcg tggtgaacct gtatccattc
     1321 gtgcagacgg tatcgaagga agaatgctcg ctggaagacg cgatcgaaaa tatcgatatt
     1381 ggcggcccga ccatgctgcg ttcggcggcg aagaatcatc gtgatgtaac ggtgatcgtc
     1441 gatccgtcgg attacgcgat cgtcctcgac gaaatgcgct cggcgaaaaa taccgtcagc
     1501 tacgcgacga acttcaagct cgccaccaaa gtgtttgcgc acacagccca atacgatggc
     1561 gcgatcacga attacctgac gag
//
LOCUS       DATGBK010000186         3034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_326229, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000186 DATGBK010000000
VERSION     DATGBK010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326229"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..965)
                     /locus_tag="VKJ77_02725"
     CDS             complement(<1..965)
                     /locus_tag="VKJ77_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011882055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HMC44219.1"
                     /translation="MKSEKQSGVFTSNKNSHGVPVTRVGLSLLLAAMVSACAWVPGQH
                     MAMPPSLPVTTADNGDVTSDVPVTVKQIDLTLIRQIHASQTGSVQATTNLNLFAKPAG
                     YKVGPGDVLQITVWDHPELAAALGQSAVNTRVADAAPGFVVGGEGNIQFPYIQKPIHA
                     AGKTPEQLQREIYTELSKVFVKPQVTVRVESYRAAQVYIDGDVRTPGAQAINDIPMTL
                     PEAIGRAGGFMPTADQGRVTITRNGTSYPVNLAQMLKSGKNPSDIMLQPGDMLHVNAR
                     DENTVYVMGEVVKPTAVSPLRDGTLTLAEALSQAGNLSPTTSNAR"
     gene            complement(1212..2732)
                     /locus_tag="VKJ77_02730"
     CDS             complement(1212..2732)
                     /locus_tag="VKJ77_02730"
                     /EC_number="2.7.7.13"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase"
                     /protein_id="HMC44220.1"
                     /translation="MDTHVTQNLGDVTGVADPSGIATTCRRLVQVVLAGGSGTRLWPM
                     SREQFPKQLIGVMGAESLLQSTVLRMKDFPQEWDVVAESVIVCGEEHRVATDEQVRES
                     GVKARIVVEPARRDTAPALTLAALTACADGQDAILVAMPADHAIADLAALHRSIVIAA
                     RHAQAGQIATLGVPPTRPDTGFGYISLGEPLAEGAFGIDRFVEKPVAELAAQYVAAGT
                     YWWNSGIFVVRASVWLAVLEQLQPIMYAACVASHEQADLSGGYLRPDAVQFGQSPSDS
                     IDYAVMEHLGAADSPFKGVVVPLEAGWSDLGSWDAVWDATDKDELGNVASGRVVFEGA
                     TATYARSEGGRLVACVGTQNLIVVETDDAVLVCDRSRVQDIKGLVARIKQQKSPEADC
                     HRKVRRPWGFYDSIDRGERFQVKRIVVNPGGRLSLQMHHHRAEHWTVVCGTARVTRGE
                     EEFLLSENESTYIPLGMLHRLENPGCVPLEIIEVQSGSYLGEDDIVRFDDKYGRCG"
     gene            complement(2866..>3034)
                     /locus_tag="VKJ77_02735"
     CDS             complement(2866..>3034)
                     /locus_tag="VKJ77_02735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC44221.1"
                     /translation="RLAVACTLLTDSELPVDKIARRSGMGNGDRLAKIFRRRLLISPT
                     EYRMQSRGNGG"
BASE COUNT          555 a          968 c          905 g          606 t
ORIGIN      
        1 tgcctggcgt tggacgtggt cgggctcagg tttcccgcct gcgagagcgc ttcggcgagc
       61 gtcagcgtgc cgtcgcgcag cggcgatacg gccgtgggct tgaccacttc gcccatcacg
      121 tagaccgtgt tttcgtcgcg cgcattcacg tgcaacatgt cgcccggttg cagcatgatg
      181 tcggaggggt tcttgccaga cttcagcatc tgcgcgagat tcaccgggta actcgtgccg
      241 ttacgggtga tcgtgacgcg gccctggtcg gcagtcggca tgaagccacc tgcccggccg
      301 atggcctcgg ggagcgtcat cggaatgtcg ttgatcgcct gcgctcccgg ggtgcgcaca
      361 tcaccgtcta tatacacttg cgccgcacga tacgactcca cgcgaacggt aacctgcggc
      421 ttcacgaaca ctttgctgag ctctgtgtag atctcacgct ggagctgctc gggcgtcttg
      481 ccggccgcgt ggatcggctt ttgaatatag ggaaactgaa tgttgccttc gccgccgacg
      541 acaaaacccg gcgccgcatc cgcgacccgc gtgttcaccg ccgactggcc gagtgccgcg
      601 gcgagttccg ggtgatccca gaccgtgatt tgcaggacgt cgcccggtcc gaccttgtag
      661 ccggccggct tggcgaacag gttgagattg gtcgtcgcct gcacgctgcc cgtctgggag
      721 gcatggatct ggcggatcag cgtcagatcg atctgcttga ccgtaaccgg cacgtcgctc
      781 gtcacatcgc cgttatccgc ggtggtgacc ggcagcgagg gcggcatcgc catatgctgg
      841 ccaggtaccc aagcacaggc tgaaaccatg gcggcgagca gcagggaaag gcccacacgc
      901 gttacaggca cgccatggct gttcttgttc gacgtgaaaa cgccggattg tttttcgctc
      961 ttcatgatgg tcgtcctcct actttcagta agcattggtg tggcataagc ctttaaggat
     1021 cgttgcgaag atgattttca tatcaagtcc gaaagaccag ttcctgacta ctacaaatcg
     1081 tgagcaacgc gtcccctcca ttttttgatc gcatcagtct tgccctgaga gccgttggcc
     1141 tgggccaggc tgcaatgcct gctttaatgc aacagcggcg gatgaccttg gccaggacct
     1201 tctggccgtg ctcaaccgca acggccgtac ttgtcgtcga aacgaacgat gtcgtcctcg
     1261 ccaaggtaac tgccggactg cacttcaatg atctcgagcg gtacgcagcc cgggttttcc
     1321 aaacgatgca gcatgccaag cgggatataa gtcgattcgt tttcgctcag caggaactct
     1381 tcttcaccgc gcgtgacgcg cgccgtaccg cacacgacgg tccagtgttc cgcccgatgg
     1441 tgatgcattt gcaacgagag ccgcccgccc ggattcacca cgatgcgctt cacctggaaa
     1501 cgctcgccac gatcgatcga gtcgtaaaaa ccccacggac gccgaacctt tctgtggcaa
     1561 tcagcttccg gcgacttctg ttgcttgatg cgcgcaacga ggcccttgat gtcctggacc
     1621 cgcgagcggt cgcaaaccag cacggcgtcg tcagtctcca ccacgatcag gttctgcgtg
     1681 ccgacgcagg caaccagccg tccaccttcc gagcgcgcgt aggtcgcggt tgcgccttca
     1741 aacacgactc gcccgctcgc cacgttgccc aattcgtcct tgtccgtcgc gtcccacacg
     1801 gcgtcccacg aaccgagatc cgaccagccg gcttccagcg gaacaaccac acccttgaag
     1861 ggcgaatcgg cggccccgag atgctccatc acagcgtagt cgatggagtc cgatggcgac
     1921 tggccgaatt ggactgcatc tggacgcaag tatcccccag acaaatcagc ttgttcgtgc
     1981 gacgcgacac atgccgcgta cataattggc tgaagttgtt cgagcacggc aagccacact
     2041 gatgcgcgca cgacgaaaat gccgctgttc caccagtagg tgcccgctgc gacgtattgc
     2101 gccgcaagct cggcgaccgg cttttcgacg aaccggtcaa taccaaacgc accttcggca
     2161 agcggctcgc ccagagagat atagccgaaa ccggtatcgg gacgcgtggg ggggacacca
     2221 agcgtggcga tctggcccgc ttgtgcgtga cgcgccgcaa tgacaattga acggtgcagc
     2281 gccgcgagat ccgctatggc gtgatccgcc ggcatggcga ccaggattgc gtcctggccg
     2341 tccgcgcagg cggtcaacgc cgcaagcgtc agcgcgggcg ccgtatcgcg gcgggccggt
     2401 tccaccacga tgcgcgcttt cacgccgctt tcgcgaacct gctcgtccgt cgccacgcga
     2461 tgctcctcgc cgcacacgat gaccgactcc gccaccacgt cccattcttg cgggaagtct
     2521 ttcatgcgca gcacggtgga ctgcagcaac gattcggcac ccatcacgcc gatgagctgc
     2581 ttcgggaact gctcgcgcga catgggccag agccgcgtgc ccgagcctcc cgcgaggaca
     2641 acctggacga ggcgccggca agtcgttgcg atcccggagg gatccgccac gccggttacg
     2701 tcgccgaggt tttgcgttac atgggtatcc atattagtta tcctatcttc tggttggccc
     2761 gaatatcggg cgctactgtt ggcgttggtt gtcgagcgcg ggccgttcaa tccgcatgtt
     2821 tctctcgtcg caccgtgatc aagacaatca atattctcag tggccttagc caccgttgcc
     2881 gcggctttgc atccggtatt cggtcggtga aatcaggagg cgcctgcgga agatctttgc
     2941 cagccggtcg ccgttgccca tgccgctgcg gcgagcgatc ttgtccacgg gcaattcgga
     3001 atcggtgagc agggtgcagg cgacggccaa gcgc
//
LOCUS       DATGBK010000187         2767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_210391, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000187 DATGBK010000000
VERSION     DATGBK010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210391"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VKJ77_02740"
     CDS             complement(<1..455)
                     /locus_tag="VKJ77_02740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HMC44222.1"
                     /translation="MPDLTLPDSNDSNGPRSLGRRLSMPIFLVVIGVGIIYCVTHLMH
                     DLESVQQSSILPYVLLGVALMIALGFEFVNGFHDTANAVATVIYTHSLAPNLAVVWSG
                     AWNFLGVLVSSGAVAFGILQLLPVELILGVGTSQGFAMVFALLIAAIIW"
     gene            660..2105
                     /locus_tag="VKJ77_02745"
     CDS             660..2105
                     /locus_tag="VKJ77_02745"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HMC44223.1"
                     /translation="MLQLVELKMVSLDALNGPPDEALARLARFATARRTDFVLRSQKA
                     GTNLASGLTEWEVGIETHDDHRVFVAMHRDWPLIRRIETEAGPFDTLHAWIKSEAALT
                     DLKTLLGDAGFTLSEATETAIVEWDTPGEMDTGVHVRATLRLDADRPAMLTLTAAPDA
                     REALFATAHEIAETLPFLIMPIAIDSALREPVKASKLKLPKDASPTDAFVAIGKSVAA
                     QWFGNDAASRTGLEVEHVHQLRVAQRRLKTALKLFPEWIDPTWTTRVAPDLKWFGDLL
                     GDARDWDVFTDTTLAAYAESDDPQHKDAWKLTQSAADTHRIAARQRLQDAMNSPRYAL
                     LAVSFVEWFSTLEAPPGQADQTLAAYAQKRITKHYRKIERAPDLTTLDAATRHKVRIH
                     AKRLRYALEFFRSLLTRKTRKQVEEALGNLQSVLGEGNDAAVAAQRLADLKEAGDFQK
                     GLAKGFAVNAQRMSAMEGERILRKIKPPRIK"
     gene            2163..>2767
                     /locus_tag="VKJ77_02750"
     CDS             2163..>2767
                     /locus_tag="VKJ77_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HMC44224.1"
                     /translation="MTEESRSTPHDPIEVGGSVWFRSGEATLGGAARIALLAAIQQTG
                     SITGAAKAVGMSYKAAWDAIDTMNNLAGTTLVVRATGGKGGGGTTLTAKALRLIDTYR
                     AIEREHQAFLERAGAAIEGFAQDWRLIGRIGMKTSARNQLFGTVRKVTRGSVNDEVEL
                     TLSGGQAIVAVVTHESTESLGLKEGVEAFALVKASWVMLMV"
BASE COUNT          589 a          792 c          892 g          494 t
ORIGIN      
        1 ttccagatga tcgcggcgat cagcaaggcg aacaccatcg caaaaccctg cgatgtccca
       61 acgcccagga tcagttccac cggcagcagt tgcaggatgc cgaacgccac cgcgccgctc
      121 gataccagca cgccgagaaa attccatgcg cccgaccaga cgaccgcgag gttaggcgcg
      181 agcgaatggg tatagatgac ggtggcgacg gcgtttgccg tatcgtggaa accatttacg
      241 aattcgaacc caagggcgat catcaaggcg acgccaagca ggacataagg cagtatcgaa
      301 gactgctgga ccgactccag gtcgtgcatc agatgcgtca cgcaatagat aatgccaacg
      361 ccgatcacga cgaggaagat cggcatgctc agccggcgtc cgagcgagcg gggcccgtta
      421 ctgtcgttgc tgtcgggtag agtcaggtca ggcatggaac gtcctttgag ctagagactg
      481 cgtgtaaacg gaagggggat tcaggcgata aggcgttctg ctggcaatgc catggatcat
      541 gtttgcacaa gctttatgtc gctttgatga catctgaaag gattgaaatt cgtctgatct
      601 gaagtagcgg cgtgcgactt gctgccccgg caaggacacc cgctcatgat ggggaagtta
      661 tgttgcaact cgtcgagttg aagatggttt ctctggatgc gctgaacggt ccgccggacg
      721 aagcgctggc gcggctggcc cgattcgcta ccgcgcgccg gacggatttc gtgctgcgat
      781 cgcaaaaagc cggaacgaat ctggcttcgg gtctgaccga gtgggaagtc gggatcgaga
      841 cgcacgatga ccatcgggtt ttcgtggcaa tgcaccgaga ctggccgctg atccggcgga
      901 ttgaaaccga ggcagggccg tttgatacgc tgcatgcctg gatcaagtcg gaggcagcgc
      961 tgactgatct caagaccctg ctcggcgacg ccggttttac attgagcgag gccaccgaga
     1021 cggcgatcgt cgagtgggat acgcccggcg aaatggatac cggtgtgcac gtgcgcgcca
     1081 cgctgcggct tgacgcggat cgcccggcaa tgctgacgct gacggctgcg cccgacgcac
     1141 gcgaggcgct gttcgcgacc gcgcatgaga ttgcggagac gctgccgttc ctgatcatgc
     1201 cgatcgctat cgacagcgcc ttgcgcgagc cggtcaaggc cagcaagctg aagttgccga
     1261 aagacgccag tccaaccgat gcgttcgtcg ctatcggcaa gtcagttgcg gcgcagtggt
     1321 tcggcaacga cgccgcatcg cgcactgggc ttgaggtgga acacgtgcat caattgcgtg
     1381 tcgcgcagcg tcgtttgaag acggcgctca agcttttccc tgaatggatc gaccctacgt
     1441 ggactacccg cgttgcaccc gatctgaaat ggttcggtga cctgctgggc gatgcccgcg
     1501 actgggacgt cttcaccgac accacgcttg ccgcctacgc ggagtccgat gacccgcagc
     1561 acaaggacgc gtggaaactg acgcaaagcg ccgccgatac ccatcgcatc gccgcccggc
     1621 agcgtctgca ggacgcgatg aattccccgc gctacgctct tctcgcggtg tcgtttgtag
     1681 agtggttcag cacgctcgaa gcgcccccgg gccaggcgga ccagacgctc gccgcctatg
     1741 cgcagaagcg catcacgaag cattatcgga agatcgagcg tgcaccggat ctcaccacgc
     1801 tcgatgccgc gacgcgacac aaagtgcgaa tacatgccaa gcgcttgcgt tacgcgctcg
     1861 aatttttccg ctcgctgctg acccggaaaa cccgtaagca agtggaagag gcactgggga
     1921 atctgcaaag cgtcctgggt gaaggcaacg acgcggccgt cgctgcacag cggctggccg
     1981 acttgaagga agccggcgat ttccagaagg gtttggcgaa gggctttgcc gtcaacgcgc
     2041 aacggatgag cgccatggag ggcgagcgca ttctgcgcaa gataaaaccg ccgagaatca
     2101 agtgaatgca tgcatcgata taatcgtcgc actctcttac cactctgctc ggctctcgcc
     2161 ccatgactga agaatcccgt agtacaccgc acgatcccat cgaagtaggc gggtcagtct
     2221 ggtttcgtag cggggaggcc acgcttggcg gtgcggcgcg catcgcgttg ctcgcggcca
     2281 tccagcagac cggttcgatc acgggggcgg cgaaggcggt cggcatgagt tataaggcgg
     2341 catgggacgc catcgacacc atgaataacc tcgccggcac cacgctcgtc gtgcgagcca
     2401 cgggcggcaa gggcggcggc gggaccacgc tgacagcgaa ggcgctgaga ctgatcgaca
     2461 cctatcgggc gatcgaacgg gagcatcagg cgtttctgga acgcgcgggc gcggcgatcg
     2521 aaggattcgc gcaggactgg cggcttattg gaagaatcgg tatgaaaaca agtgcgcgca
     2581 accaactgtt tggcacggtc aggaaagtca cgcgcggttc cgtcaatgat gaagtcgaac
     2641 tcacgttgtc cggtggccaa gcgatcgtcg ccgtggtcac gcacgaaagt acggagtcgc
     2701 ttggtcttaa ggagggcgtc gaggcgtttg cgctcgtgaa ggcgtcatgg gtgatgctga
     2761 tggtcga
//
LOCUS       DATGBK010000188         1987 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_2289, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000188 DATGBK010000000
VERSION     DATGBK010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2289"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..349)
                     /locus_tag="VKJ77_02755"
     CDS             complement(<1..349)
                     /locus_tag="VKJ77_02755"
                     /inference="COORDINATES: protein motif:HMM:NF013478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HMC44225.1"
                     /translation="MLLVFARGAGLMFRAPGFTHPSVPLIVRLGMALVLAVCVAPGVA
                     GHAEMDTAAFGLAIAAEIALGTAMGMGASLLYDGAYYAGRMIDDYVGVRGSVPNAAVT
                     SAQGFGRLWSSVFL"
     gene            complement(358..627)
                     /locus_tag="VKJ77_02760"
     CDS             complement(358..627)
                     /locus_tag="VKJ77_02760"
                     /inference="COORDINATES: protein motif:HMM:NF013480.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliQ"
                     /protein_id="HMC44226.1"
                     /translation="MAEFSVLLRDALIVTAVLTLPILILATIVGAVVAIVQAATQVQE
                     QTLTLLPKVIAVGGAIALFGGYGMHLCAQLFYEALAGIPALVHGA"
     gene            complement(673..1209)
                     /locus_tag="VKJ77_02765"
     CDS             complement(673..1209)
                     /locus_tag="VKJ77_02765"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HMC44227.1"
                     /translation="MMPSPCSAALDVGCGAGMLVRVLAGRAESVTGIDASNEMAEMAQ
                     RGDPDATIAHGDFLTYDFGSQRFDFITCVAALHHMDLQMALERMKALLQPNGVIAIIG
                     LAKTGTMLDFGIDCVGFIASRIVRLHRPVAYSGAPIKEPERTYGDVKRTASAVLPGAV
                     FRRLLLFRYLLTWRNTIR"
     gene            complement(1503..>1987)
                     /locus_tag="VKJ77_02770"
     CDS             complement(1503..>1987)
                     /locus_tag="VKJ77_02770"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: protein motif:HMM:NF014296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0006555 - methionine metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HMC44228.1"
                     /translation="IGGAAYPEKHPEATSLHADLDALERKVNAGARFLITQLFFDNRL
                     YFDFVARARARGITVPILPGIMPITNYDQIDRFTKSCGATIPAGLRSELEVRRSEPEA
                     VSELGVAYATLQCVELLDGGAPGIHFYTLNKSPATRAVVSALYASRFAALRSHAQQPA
                     "
BASE COUNT          480 a          605 c          565 g          337 t
ORIGIN      
        1 cgagaaaaac tgacgaccat aaacgcccga acccttgggc ggaggttacc gcggcgttcg
       61 gaacgctgcc gcgcacgccg acgtaatcgt cgatcatgcg gccggcataa tatgccccat
      121 cgtataagag cgacgcgccc attcccattg ccgtcccgag cgcaatttcg gcggcaattg
      181 caagaccgaa ggcagccgta tccatctcgg cgtgcccagc gacgccaggt gcaacgcaaa
      241 cggcgagcac gagcgccatt cccagacgca cgatcagcgg gacgcttgga tgagtgaagc
      301 ccggcgcacg aaacatcaat ccggcaccgc gcgcaaatac gagcagcatc gtctgcgtca
      361 cgcgccgtgg accagcgccg gaatgccggc cagcgcctca taaaaaagct gcgcgcacag
      421 atgcatgccg taaccgccaa agagcgcgat cgcgccgccg acagcaatca cttttggaag
      481 cagcgttagc gtctgttcct gaacttgtgt cgcagcttgc acgatcgcga caacggcacc
      541 aacgatcgtc gccaggataa gaatcggcag cgtcaggacg gccgtaacga tcagagcatc
      601 gcgcagaaga acggagaact cagccacacc cacataatcc ggccggggcg tgaccgcaag
      661 acgagggaat tgttaccgaa ttgtgtttcg ccaggtaagc aggtagcgga aaagcagcag
      721 cctgcgaaac acagcacccg gaagaacggc ggatgccgtt cgtttcacat cgccgtaggt
      781 gcgctcgggc tctttaatcg gagcaccgga gtacgcgacc ggccggtgaa gccgcacgat
      841 tcgagacgcg ataaaaccca cacagtcgat gccaaaatcg agcatcgtcc cggtcttcgc
      901 caagccaata attgctatga cgccattggg ctgcaagagc gccttcatcc gctctaacgc
      961 catttgcagg tccatgtgat gaagcgcggc cacgcacgtg atgaaatcga accgctgtga
     1021 accaaaatcg tacgtcagga aatcaccgtg agcaatcgtc gcgtctggat caccacgctg
     1081 cgccatctcg gccatctcgt ttgaagcatc gatgccggta acagactccg cacgcccggc
     1141 tagcacccga acgagcatcc ccgcaccaca cccaacatcc aacgcagcag aacacggcga
     1201 cggcatcatg tccaagacaa gtccatgata gtggatgttg cgattccagc cgctcacatc
     1261 atggcgaatc agacgtcgcg ggattgcagc cgccgaatgc ggcgcaactg gacaaaaaac
     1321 agtatcacgc tcgcacccaa tagtgcgacc caataccata gcagagtcga acctgccctg
     1381 tgccaagaga ttcccattag gctcgaaata gcgattaaaa ccggcgcgag cagcccgagt
     1441 ttggccgacc gtattgccga ctgtcgctcc gcctccgtca tgtcaggtcg cgtaatcatc
     1501 tcctatgcag gttgctgcgc atgcgagcgg agtgctgcaa aacgtgaggc gtagagtgcc
     1561 gagacaacgg ctcgagttgc cggtgacttg ttgagggtgt aaaagtgaat gccgggggcg
     1621 cccccgtcga gcaattcaac gcattgcaat gtcgcgtaag cgacgccaag ttcggatacc
     1681 gcctccggtt cgctccggcg cacctcgagt tccgatcgta aaccggcggg aattgttgca
     1741 ccgcagcttt tcgtgaaacg gtcgatctga tcgtagttcg tgatcggcat gatgcccggc
     1801 agaatcggca cggtgatgcc gcgggcgcga gcgcgagcaa caaaatcaaa gtacaggcga
     1861 ttatcgaaaa agagctgcgt gattaagaat cgcgcgccgg cattcacctt gcgttccagt
     1921 gcatcgagat cagcgtgcag gcttgtcgct tcgggatgtt tctcagggta ggccgcgccg
     1981 ccgatgc
//
LOCUS       DATGBK010000189         2399 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_2296, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000189 DATGBK010000000
VERSION     DATGBK010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2296"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..881
                     /locus_tag="VKJ77_02775"
     CDS             39..881
                     /locus_tag="VKJ77_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017879213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1365 domain-containing protein"
                     /protein_id="HMC44229.1"
                     /translation="MSTPAPQSFDAPDLLLVGPVRHKRLRPARNAFSYGVYTLRLPLR
                     ARAARLAQGTQRDSRLFATNRFGLLSFYDSDHGAEEQTALQWIESMLHENGIDDATGE
                     IFLHTFPRVLGYVFNPVSFWFCERADGTLRAVVCEVNNTFGERHCYLLDPGSGVLNGT
                     PLTAAKVFHVSPFCKVQGHYTFRFMFASPKRGKPLCSLACIDYDDGEGPLLLTSIAGS
                     ARPLDARNVLRVFFGYPLMTFGVVAKIHWQALKLFFKRVPFQSKPTPPAANVSHERAE
                     LPTR"
     gene            889..2172
                     /locus_tag="VKJ77_02780"
     CDS             889..2172
                     /locus_tag="VKJ77_02780"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005792808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HMC44230.1"
                     /translation="MSTQPSSPSSLRSPVASWFIRPLLRTHGALRKPAAARVVLRLLS
                     QLQYGVLDVHLPDGTTRRFGQAPDAPGNPPYARVVLTNWNVCAAALKSGDIGFAETYL
                     AGDWHTDDLAALLDIMVRNRTTIEAVVYGSWFGKLTNRFRHLRNSNTKEGSRRNIHAH
                     YDLGNAFYKLWLDSTMTYSSALFDGSPDQTLDDAQRAKYRRLLNELKLEGVNLNVLEI
                     GCGWGGFAQLAASEAKANVTGLTLSTEQLAYAQQRLADAGLSDQTDLRLQDYRDTHGQ
                     FDAIASIEMFEAVGEEYWPSYFECIKRNLKRGGRACVQTITIDNALFDRYRTSTDFIQ
                     QYIFPGGMLPSPAVFVQSAERHGLKVVNQLSFGRDYARTLRMWRNAFVARLDEIRAQR
                     FDERFIRLWDFYLCYCEAAFAHSNTDVIQFTLEHA"
     gene            2211..>2399
                     /locus_tag="VKJ77_02785"
     CDS             2211..>2399
                     /locus_tag="VKJ77_02785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44231.1"
                     /translation="MPLQAFAFDAAPVVRQTIPQARVQGEGELRMYGFHIYDAKLFVG
                     PTGLSSKELTARPFALDIE"
BASE COUNT          453 a          767 c          706 g          473 t
ORIGIN      
        1 gtcgcgacat tgagccgcaa cgcaccggcg cttgcagcat gagtacgccc gcccctcaat
       61 ccttcgatgc ccccgacctg ctgctcgtcg ggcccgtgcg acacaagcgg ctgcgcccgg
      121 cacgcaacgc gttctcctac ggcgtctaca cgttgcggct accgctgcgc gcacgtgccg
      181 caagactggc ccaaggtacg cagcgcgact cgcgcttgtt cgccaccaat cgattcggct
      241 tactaagttt ctatgacagt gaccacggtg ccgaggagca aacggcgctc caatggatcg
      301 aatcgatgct gcatgaaaac ggcatcgacg acgccaccgg cgagatcttc ctgcacacgt
      361 tcccgcgcgt gctgggctac gtcttcaatc cggtgagctt ctggttttgc gagcgcgcgg
      421 acggcacatt gcgcgccgtg gtctgcgaag tgaacaacac cttcggcgag cgccattgct
      481 acctgctcga tcctggcagc ggcgtcctga acggcacacc gctcacggcc gccaaagttt
      541 tccacgtgtc accgttctgc aaagtgcaag ggcactacac gttccgcttc atgtttgcat
      601 cgccgaaacg cggtaaacca ttgtgctcgc tcgcgtgcat cgactacgac gacggcgagg
      661 gtccgctgct gctgaccagc atcgcgggga gtgcccgccc gctcgatgcc cgcaacgtgc
      721 tgcgcgtgtt cttcggttac ccgctgatga cgttcggcgt cgtcgcgaaa attcactggc
      781 aggcgctgaa gctgttcttc aagcgcgtgc cgttccagag caaacccact ccgccggctg
      841 cgaacgtctc gcacgagcgg gccgaattgc cgaccaggtg acttgcaaat gtcgacacag
      901 ccctcctccc cttcatcgct tcgcagtccg gttgcatctt ggttcatccg gcccttgctg
      961 cgaacccatg gcgcgttgcg aaaacccgcg gctgcgcgcg tggtgctcag gcttttgagc
     1021 cagcttcaat acggcgtcct cgatgtccac ctccctgacg gcaccacgcg ccgtttcgga
     1081 caagcgcccg acgcccccgg caacccgccg tacgcgcgtg tcgtgctgac taactggaac
     1141 gtgtgcgcgg cggcgctgaa gagcggcgac atcggcttcg ccgagaccta tctggccgga
     1201 gactggcata ccgacgatct cgcggcgctg ctcgacatca tggtgcgtaa ccgcacgacg
     1261 atcgaggcgg tggtctacgg ctcgtggttc ggcaagctga cgaatcgctt ccgccatctg
     1321 cgcaattcga acacgaagga aggcagccga cgcaatatcc acgcgcatta cgacctcggc
     1381 aacgcgttct acaagctctg gctcgacagc acgatgacct attcgagcgc cctcttcgat
     1441 ggctcgccgg atcagacgct agatgacgcg caacgcgcaa aataccggcg gctactgaac
     1501 gaactgaagc tcgaaggcgt caatctgaac gtgctggaga tcggctgcgg ctggggcggg
     1561 tttgcgcaac ttgctgcgag cgaggcgaaa gcgaatgtga ccggcctgac gctgtccacc
     1621 gaacaactcg cttacgcgca gcagcgtctg gcagacgctg gcttaagcga tcaaactgat
     1681 ctccgcctgc aggattaccg cgatacccac ggccagttcg atgccattgc atcgatagaa
     1741 atgttcgaag ccgtgggcga ggaatattgg ccgagctact ttgaatgcat caagcgcaat
     1801 ctcaagcgcg gcgggcgcgc atgcgtgcag acgatcacta tcgacaacgc gctgttcgat
     1861 cgttacagga cgagtaccga ctttatccag cagtatattt ttccaggcgg tatgctgccc
     1921 tcgcctgcgg tgttcgtgca atcagcggaa cgccacgggc tgaaagtggt caaccagctc
     1981 tcctttggcc gcgactatgc gcgcacgctc aggatgtggc gcaacgcgtt tgttgcgcgg
     2041 ctcgacgaga tccgtgcaca aagattcgac gaacgattca tccgcttgtg ggacttttac
     2101 ttatgttatt gcgaggccgc attcgcgcac tcgaacaccg acgtcatcca gttcacgctg
     2161 gagcacgcct gatcgcgaga gccgctgcgc tcgcgctggt cctgatcgtc ttgccgctgc
     2221 aggcgtttgc tttcgacgcg gcaccggtcg tgcgtcagac gattccccag gcgcgcgtgc
     2281 aaggcgaagg cgagttgcgc atgtacggtt ttcatatcta cgacgccaag ctgtttgtcg
     2341 ggccgaccgg tctgtcgagc aaggaattga cggcgcggcc gtttgcgctg gatattgaa
//
LOCUS       DATGBK010000190         2485 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_164291, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000190 DATGBK010000000
VERSION     DATGBK010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164291"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1417)
                     /gene="cysS"
                     /locus_tag="VKJ77_02790"
     CDS             complement(<1..1417)
                     /gene="cysS"
                     /locus_tag="VKJ77_02790"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017234702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HMC44232.1"
                     /translation="MNSLRIYNTLARDKQPFVPLRAGEVRMYVCGITVYDYCHVGHAR
                     MMIVFDIVQRWLRTLGYNVTYVRNITDIDDKIIRRAVENGESIKALTGRFIQAMYDDL
                     DALGVARPDLEPRATDFVPQMLGMIQTLVQNGYAYQAKDGDVNYAVRKFEGYGKLSGK
                     SIEDLRAGERVAANDAKQDPLDFVLWKRAKEGEPPDTGWDSAWGRGRPGWHIECSAMG
                     CTLLGDRFDIHGGGQDLQFPHHENEIAQSEAATGVQFVNYWMHNGFVQIDSEKMSKSL
                     GNFFTIREVLEKFDAEVVRFFIARAHYRSPLNYSDVHIEDARGALTRLYTALKDVTPD
                     AGPLDWNEAHAQRFSAAMNDDFNTPVAIAVLFELASEVNRSQDTVLARQLKELAALLG
                     LLQREPRAFLQDTPRSGRNSDGEEAAENLTPADIDMMIAARVAAKQAKNYAEADRIRA
                     ELLEAGIALEDKPGGLTEWRRA"
     gene            complement(1595..1966)
                     /locus_tag="VKJ77_02795"
     CDS             complement(1595..1966)
                     /locus_tag="VKJ77_02795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44233.1"
                     /translation="MATLDARPLEGFIGSGLDVILRPILTKRLQRSAERPDSLYATRG
                     RLRFDCSVTVMFFATARTVPGASSSKPGRVKHVERAGNLLERVPGTVAGTCHIADVRV
                     DSFSSLVSLSFSMLPSFHDYL"
     gene            1896..>2485
                     /locus_tag="VKJ77_02800"
     CDS             1896..>2485
                     /locus_tag="VKJ77_02800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC44234.1"
                     /translation="MGRSITSRPEPMKPSSGRASSVAKLAATALATVTFGLGATFLPV
                     APALAQVSTATADDTPAIDLAIAQKQWPSALAQLDARLKTNPRDVQAKFKRATVLARL
                     NRDDEAITAFTELTQAYPELPEPYNNLAALYAKKGNYDEARVALETATKANPSYALAY
                     ENLGDLYLRLASESYKRAQALGSKSPLTAQRVGDIQ"
BASE COUNT          528 a          757 c          688 g          512 t
ORIGIN      
        1 aagcgcgacg ccattcggtc aacccacccg gtttgtcttc aagtgcaatc ccggcttcga
       61 gtaattcggc acgaatccgg tctgcttcgg catagttctt tgcctgcttc gcagcaacgc
      121 gagcggcaat catcatgtct atatcggcag gcgtgaggtt ttctgcagcc tcttcgccat
      181 cactattgcg accgcttcgc ggtgtgtcct gaagaaacgc acgcggctcg cgttgcaaca
      241 gcccgagcag agcggccagt tccttcaatt gacgtgcaag cacggtgtcc tgcgagcgat
      301 tcacttcgct cgccaattcg aacaacacgg cgatcgcaac cggcgtgttg aagtcgtcgt
      361 tcatcgccgc gctaaaacgt tgcgcatgcg cttcgttcca gtcgagcggc ccagcatccg
      421 gcgtcacgtc tttcaatgct gtatacaaac gggtgagcgc cccacgtgcg tcttctatat
      481 gaacgtcgct gtaattgagc ggcgaacgat agtgtgccct cgcaataaaa aagcgcacga
      541 cttccgcatc gaatttttcg aggacttcgc ggatggtaaa gaagttgccc agcgacttcg
      601 acatcttttc gctgtcgatc tgcacgaagc cgttatgcat ccagtagttc acgaactgaa
      661 cgcccgttgc agcctcgctc tgcgcaattt cattctcatg gtgcggaaac tgcaggtcct
      721 gaccgccacc gtgaatgtca aaacgatcgc ccagcaaggt gcagcccatg gccgaacatt
      781 cgatatgcca gcccggccgg ccgcgtcccc atgccgagtc ccagccggtg tccggcggct
      841 ccccttcctt cgcgcgtttc cataatacga agtcgagcgg atcttgcttg gcgtcgtttg
      901 cagccacgcg ttcgcccgca cgcaggtctt cgatcgactt gcccgacagc ttgccgtagc
      961 cctcgaactt gcgcaccgca tagttcacgt cgccgtcttt cgcctgatac gcgtaaccgt
     1021 tttgcacgag cgtctggatc atgcccagca tctgcggaac gaagtcggtc gcacgtggct
     1081 cgaggtcggg acgcgccacg ccgagcgcat cgaggtcgtc atacatggcc tggatgaatc
     1141 gccccgtcag cgccttgatc gactcgccgt tttctaccgc gcggcgaatg atcttgtcgt
     1201 cgatgtctgt gatgttgcgc acataagtca cgttgtatcc aagcgtgcga agccagcgct
     1261 ggacaatatc gaacacgatc atcatgcgtg cgtgcccgac atgacaatag tcatacaccg
     1321 tgattccgca aacatacatg cgcacttctc cagcacggag cggcacaaaa ggctgcttgt
     1381 cacgcgcgag cgtgttgtag atgcgcaatg agttcatagg cgatggtgcg tgggccggga
     1441 catccgtgtt tcgactgctg gccaaatgtt gtaacggcgg ttgtgacaac gtgctgcagg
     1501 tccgcgttcg ttcgcattcg ctcgcgttgt tttggctgcc gataaccatg gtgctttcac
     1561 aacggtgctt tttgcactgc tgctgcgacc catgctacag gtagtcgtga aacgacggca
     1621 acatcgagaa cgacaatgag accagcgaag agaacgaatc gacgcgaaca tcagcgatgt
     1681 gacacgttcc ggcgaccgtt ccggggacac gttccagcaa gtttccagca cgttcaacat
     1741 gtttgacccg gcccggcttc gaacttgaag cgccgggaac ggtgcgcgcc gtcgcgaaaa
     1801 acatgacggt cacgctgcaa tcaaaacgga ggcggccgcg agtggcgtaa agactgtctg
     1861 gacgttcagc ggaacgttgc agacgttttg ttagaatggg ccggagtata acatccagac
     1921 cagagcctat gaaaccttca agcggccgcg catcaagcgt tgccaagcta gcggcgaccg
     1981 cccttgcaac cgtcacattc ggacttggcg caactttttt gccagttgct ccggcgcttg
     2041 cacaagtctc taccgccacc gcggacgaca cgcccgccat cgacctggct attgcgcaga
     2101 agcaatggcc aagcgcgctc gcgcaactcg acgcgcgcct gaaaacgaac ccgcgcgacg
     2161 tgcaggccaa gttcaagcgt gcgaccgtac tcgcgcgttt gaaccgggat gacgaagcca
     2221 tcactgcgtt caccgagctc acccaggcct accccgaact gcccgaaccc tataacaatc
     2281 ttgccgcgct ctacgccaag aagggaaact acgacgaagc acgcgtagcg ctcgaaacgg
     2341 cgacgaaggc gaatccaagt tacgcgctgg cgtacgaaaa tctcggcgat ctatatttgc
     2401 ggctcgcgag cgaatcgtat aagcgggcgc aggcgctcgg atcgaagagt ccgttgactg
     2461 cgcagcgcgt gggcgacatt cagaa
//
LOCUS       DATGBK010000191         3488 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_94917, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000191 DATGBK010000000
VERSION     DATGBK010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94917"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..747
                     /locus_tag="VKJ77_02805"
     CDS             <1..747
                     /locus_tag="VKJ77_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006157398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlrC C-terminal domain-containing protein"
                     /protein_id="HMC44235.1"
                     /translation="ELASYGWQERAAFTPRLTPLNDAVNLAKATGDNASRAPVLLADV
                     ADNPGGGGRGNTPFILKALHEQDVRGAILGVVTDPELVSDAYVAGTGQTFQARFNRAE
                     TTIYSELFDVPARVLRLHTGKGVGRRGQLAGCSFDLGPSVALQVGGVTVIVISKRHQC
                     HEPMFFEMFGIDIASARVVVLKSRGHFRAAFDEFFADEQIVSVDAPGLTSPILARFDF
                     KKLPRPVVPLDDISTWSPTVRAVQPNSDAR"
     gene            878..2242
                     /locus_tag="VKJ77_02810"
     CDS             878..2242
                     /locus_tag="VKJ77_02810"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44236.1"
                     /translation="MNDTSNAARIRPQTARKVIWHLAPLLILLYVVNQMDRANVGYAA
                     LTMNHELGMSVSQFGFAAGLFYAGYILVAVPSNLLLARFGARLWMTRILVTWGIIASL
                     TAFVDSAHTLYVLRFLLGIAESGFFPGMVLYVTFWLPRQERVWLMSLLFIAIPLSNML
                     GAPISTFVMEHVHIFGWSGWRSMFFIEGLPAIALGVATFILMKNRPDDATWLTTNERA
                     ELNEALAVEQQEAQRVSPKSAWSALLDRRVLAFGLIYFGINIGVVALSFFMPQIVAEF
                     SRTFAVKYSVFQIGLITAIPFAVSAVTILLWGNYARRTAVSAWHVAIPTAIGGLSFAA
                     ALFLSSPYEVMAAFTLGAVGVYTPHASFWQLPPRYLSNAAAAAGIGLINTIGTLAGFL
                     GPYATGWLHDVTGSYRVPMLGVAALMCISATVVVLIERTSRTAPPSVRPIELREGRVS
                     RSAV"
     gene            2468..>3488
                     /locus_tag="VKJ77_02815"
     CDS             2468..>3488
                     /locus_tag="VKJ77_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC44237.1"
                     /translation="MEYRQLGRSGLKVSTITLGTMTMGGKGKFASVGEVGLDDARRQI
                     DMCIDAGVNLIDTADVYSNGASEEIVGEALGGKRKGGVLIATKARFPMGDGPNDRGLS
                     RHHLIEACEASLRRLKTDVIDLYQVHEWDGLTPLEETLEALDLLVRHGKIRYVGCSNY
                     SGWHLMKALHVSERDRLPRFVSQQIHYTLEAREAEYELAPIALDQGLGILVWSPLAGG
                     LLSGKHRRDATPEGTRQLAGWTEPPIRDEQRLWSIVDVLVEIAGEHKVSAAQVALAWT
                     LGRPAVASVIIGGRNEAQLRDNLGAANLTLTAEQRARLDKVSAPPLLYPYWHQVQTAH
                     DRLGGP"
BASE COUNT          652 a         1044 c         1076 g          716 t
ORIGIN      
        1 gagcttgcgt cgtacggatg gcaggagcgt gccgcattca cgccgcggct gacgccactc
       61 aacgatgcgg tcaacctcgc gaaagcaaca ggcgacaatg cgtcccgcgc tccggtgctg
      121 cttgctgacg tagccgacaa ccctggcggt ggcggtcgcg gcaacacgcc gtttattctg
      181 aaagcgcttc acgaacagga cgtgcgcggt gcgatcctcg gtgtcgtcac agatccggaa
      241 ttggtgtcgg acgcctatgt ggccggtacc ggccaaacgt tccaagcgcg gttcaaccgg
      301 gccgaaacca ccatttattc ggaactgttc gacgtgcccg cccgggtgtt gcggctgcat
      361 accggtaaag gtgtcggccg ccgcggtcaa ctggccgggt gcagcttcga cctcggcccg
      421 tcggtcgcgt tgcaagtggg aggcgtgacg gtcatcgtca tcagcaagcg acaccagtgc
      481 cacgagccga tgttcttcga gatgttcggc attgatatcg ccagcgcgcg cgtcgtggtg
      541 ctgaagtcgc gtggacattt cagggccgca ttcgacgaat tctttgctga cgaacaaatc
      601 gtgagcgtcg atgcgccggg cctgacctcg ccaatactcg cgcgtttcga cttcaagaaa
      661 ttaccgaggc cggttgtacc gctggacgac atttcaacgt ggagcccgac agtccgtgct
      721 gttcagccca atagcgacgc gcgatgagcg aacccgccat ctaaagcgcc gggcgacgac
      781 tcccgggcga agagcggatg acccacaaca aagcgcggcc acaccgtctc tgcacggcat
      841 tcgggggctt cgcactgtca caagaaagga attctgaatg aacgatactt cgaatgcggc
      901 acgaatcagg ccgcagaccg cccggaaagt catttggcac ctggcgccgc tgctgatcct
      961 gctctatgtc gtgaaccaga tggaccgggc gaatgtcggt tacgcggcac tgacaatgaa
     1021 tcacgaactc ggcatgtcgg tctcgcagtt cgggttcgcg gctggcctct tctacgcggg
     1081 ctacattctc gttgccgtgc cgagcaacct gctgctggcc cggttcggtg cgcggctttg
     1141 gatgacccgt attctcgtca cctggggaat catcgcttcg ttgaccgcat tcgtcgacag
     1201 cgcgcacacg ctgtacgtgc tgcgctttct actcggcatc gccgaatcgg gtttcttccc
     1261 cggaatggtg ctgtacgtca cattctggct gccgcggcag gaacgggtgt ggctgatgtc
     1321 gctgcttttt atcgcgatcc cgctgtcgaa catgctcggc gcgccaattt cgaccttcgt
     1381 tatggagcac gtgcatattt tcgggtggtc tggctggcgc tcgatgttct tcattgaagg
     1441 actgcccgca atcgcactag gcgtcgcaac cttcatcctg atgaaaaatc ggccggacga
     1501 tgctacatgg ttgaccacga acgagcgcgc tgaactgaat gaggcgcttg cagtggaaca
     1561 gcaggaggcg cagcgcgtgt cgccgaaaag cgcgtggagt gcgttgctgg accgccgagt
     1621 tcttgcgttt gggctgatct acttcggcat caatatcggc gtcgtcgcgc tgtcgttctt
     1681 catgccacag attgtcgccg agttctcacg gacgttcgct gtcaagtatt cggtcttcca
     1741 gatcggactg atcactgcga ttccgttcgc ggtgtcggcg gtaaccattt tgttgtgggg
     1801 aaactatgca cggcgtaccg ctgtcagcgc ctggcacgtc gccattccta ccgcgatagg
     1861 tggtttgtcg ttcgccgcgg cgctcttcct ttcctcgccg tacgaggtga tggccgcctt
     1921 tacgctcggc gcggtcggcg tctatacacc gcatgcttcg ttctggcagt tgcctccgcg
     1981 ctatctcagc aatgcagctg ccgcggcggg gatcgggctc atcaatacga ttggcacgct
     2041 cgccggtttc ctcggacctt atgcgaccgg ctggcttcac gatgttaccg gctcctatcg
     2101 cgtccccatg ctcggcgttg ccgcgctgat gtgcatatcc gcaaccgtgg tagtgctcat
     2161 tgagcgcacg agccgcactg cgccaccatc ggtgagaccc attgagctcc gtgaagggcg
     2221 tgtctcgaga tcggcggtct gatcacaaga gtgacccgcg taccgcgtac tttgaaactc
     2281 cgttaatcac aaaaaccgct taatctaagc agatattccc attggaatgg taagtggatc
     2341 tccgatatcg tcggacggtt gggcgcgtca acggagagaa cagacacgat tttcccgcgc
     2401 aggtggacga aaatgactgc gcgccggtcg cgaaccctgc gcaaccttca taggagattg
     2461 cttcatcatg gaatatcgtc aactcggtcg ttccggcctc aaggtgtcga ccatcacact
     2521 cggcacaatg acgatgggcg gcaagggcaa atttgcgagc gtcggcgaag tcggcctcga
     2581 cgatgcgcgc cggcagatcg acatgtgcat cgacgcgggc gtcaacctga tcgatacagc
     2641 ggatgtctat tcgaatggcg cgtcggagga aatcgtcggc gaagcgctcg gcggaaaacg
     2701 caaaggcggc gtgctgatcg ccaccaaggc acgctttccg atgggcgacg gcccgaatga
     2761 ccggggcctg tcgcggcatc atttgatcga ggcttgcgag gcgagcctgc gccgcctcaa
     2821 gaccgatgtg attgacctct accaggttca tgaatgggat gggctcacgc cgcttgaaga
     2881 gacgcttgag gcgctagacc tgctggtccg gcacggcaag atcaggtatg tcggctgctc
     2941 gaactactcg ggctggcacc tgatgaaagc gttgcacgtg agcgagcggg atcgtctgcc
     3001 gcgcttcgtg agccagcaga tccactacac gctcgaagca cgcgaagcgg agtatgagct
     3061 tgcgccaatc gcactcgatc agggacttgg cattctagtc tggagtccgt tggcaggcgg
     3121 cttgctttcc ggcaaacacc gccgcgacgc gacgcctgaa ggcacgcgac agctcgccgg
     3181 atggactgag ccgccgatcc gcgacgagca acgactgtgg tcgatcgtcg acgtactcgt
     3241 cgagatcgcc ggcgagcaca aagtctcggc cgcacaggtt gcgcttgcgt ggacgctggg
     3301 gcggcccgct gtcgcctcgg tgatcattgg cgggcgcaat gaggcgcaac tgcgtgacaa
     3361 cctcggcgcg gcgaatctca cgttgaccgc cgaacagcgc gcgcgactcg acaaggtaag
     3421 cgcgccgccc ctgctctatc cgtattggca tcaggtgcag accgcgcacg accgtcttgg
     3481 aggccctg
//
LOCUS       DATGBK010000192         1601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_256749, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000192 DATGBK010000000
VERSION     DATGBK010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256749"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VKJ77_02820"
     CDS             complement(<1..490)
                     /locus_tag="VKJ77_02820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC44238.1"
                     /translation="MPDLTNRRKTSMADIAKAADVSEATVDRVLNGRGGVSREKERRV
                     LEWARKLKIDRALDAVSVRWLRIAILLQQPVAPYYVYLKQGFEIAQKAFEAQRVICAV
                     TYFDNLEPARVVETINRATQKADALIIVAYEHPDITAALRQVSRAMPVVTLASDLPGT
                     GRL"
     gene            692..>1601
                     /locus_tag="VKJ77_02825"
     CDS             692..>1601
                     /locus_tag="VKJ77_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HMC44239.1"
                     /translation="MTRRFSTFQTRSKLAIAACITSTLFAASAARSAEPLNIVMLTHG
                     AATNAFWQAVKKGFDDACTRVQAHCQMVFTQTDGSIEQQSANFQAAVARKPDAILTTI
                     VDDNALTSMINDARAKHIIVIAYNVDQSNGAAGAAKRQAFIGQNFVPAGRSLAHQLTS
                     QFPKDGPIRVLIGVSAPGQNWAEQRAKGVMEGLDEWKRANPTRTVVIDRIDSGTDLSV
                     TGERVGAYLTAHPDTTAYFDMGFFHAAVARTLQDRNVPPGKVLLAGFDIVPQVLQMMK
                     AGYIQAEVDQQPYAQGFMPVMQVYLAK"
BASE COUNT          328 a          496 c          488 g          289 t
ORIGIN      
        1 ccagccgccc cgttcccggc aggtcactgg cgagcgtgac gaccggcatc gcgcggctga
       61 cctgacgcag tgccgctgtg atgtcggggt gctcatacgc gacgatgatc agcgcgtcgg
      121 ccttctgcgt cgcgcggttg atggtctcga ccacgcgcgc cggttcgagg ttatcgaagt
      181 aagtcaccgc gcagatcacg cgctgcgctt cgaaggcctt ctgggcgatt tcgaaaccct
      241 gcttgagata gacgtaatac ggcgcaacgg gttgctgcaa caggattgct atgcgcagcc
      301 agcgtaccga taccgcatcg agcgcccgat cgatcttgag cttgcgcgcc cattcgagca
      361 cgcgccgctc cttctcgcgc gagacgccgc cgcggccgtt gagcacgcgg tcgacggttg
      421 cttcgctgac gtcggcggcc ttggcgatat cggccatgct cgttttacgg cggttggtca
      481 gatcgggcat gagccttaca cggtttaggg aatggaccac aggactgacc cgatgatcgc
      541 atcaaccgca ctcgcctatc aagcgggcgc gtgagcaaag ccctacctaa taagtcaccg
      601 gccacgaacg gcgacagcag tacccccgca cgacggcctg acattcgcac cgcggatgca
      661 gtcgcgcacg ggacataaca ggagacaaga gatgacccgg agattcagca catttcaaac
      721 acgttcgaag ttggcgatag cggcatgcat aacgtccacg cttttcgcgg cgagcgctgc
      781 tcgcagcgca gagccgctga acattgtgat gctgacgcac ggcgccgcga ccaacgcgtt
      841 ctggcaagcc gtgaagaaag gtttcgacga tgcctgcaca cgcgttcagg cacattgcca
      901 gatggtcttt actcaaaccg acggctcgat cgagcagcag agcgcgaact tccaggccgc
      961 cgtcgcgcgc aagcccgatg caatcttgac gaccattgtg gacgacaacg cgctcacatc
     1021 gatgatcaac gacgcccgcg cgaagcacat cattgtgatt gcttataacg tcgatcaaag
     1081 caacggcgcg gcgggggcag cgaaacggca ggcgtttatc ggccagaatt ttgttccggc
     1141 cgggcgcagt ctcgcacacc aactcactag ccagtttccg aaagacggac cgatccgcgt
     1201 gctgatcggt gtcagcgcgc cggggcagaa ctgggccgag caacgcgcga aaggcgtgat
     1261 ggaaggtctc gatgaatgga agcgcgccaa ccccactcgc actgtcgtga tcgaccggat
     1321 cgactcgggc acggatctct cggtcacagg tgaacgcgtt ggcgcctatc tcaccgctca
     1381 ccccgataca acggcgtact tcgacatggg cttcttccat gcagccgtcg ctcgcacgtt
     1441 gcaggaccgt aacgtgccgc cgggcaaggt gctgcttgca ggcttcgata tcgtgcctca
     1501 ggtcctgcag atgatgaagg caggctacat ccaggccgag gtcgatcagc aaccgtatgc
     1561 gcagggtttc atgcccgtga tgcaggtgta tctggcgaag t
//
LOCUS       DATGBK010000193         2119 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_256750, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000193 DATGBK010000000
VERSION     DATGBK010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256750"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            8..661
                     /locus_tag="VKJ77_02830"
     CDS             8..661
                     /locus_tag="VKJ77_02830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding negative transcriptional regulator"
                     /protein_id="HMC44240.1"
                     /translation="MYLPPYFEEKRPEVLHRLMADNPLAALVTHAANGLDANHVPFEF
                     DASLGEHGILRAHVARANPICQEIESGSDVMVIFQGASGYISPSFYPGKQETHRQVPT
                     YNYLVVHAHGRITIRDDETFVRGVVARLTRKMEAGETVPWKMGDAPPDFIQTMLQAIV
                     GIEIEVTRLVGKAKLSQNKAAADRIGAISGVRRRETDAATALADAMLNAPPPIENTP"
     gene            740..>2119
                     /locus_tag="VKJ77_02835"
     CDS             740..>2119
                     /locus_tag="VKJ77_02835"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015662 - P-type ion transporter activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HMC44241.1"
                     /translation="MSVSSTTAAASTTAEFAIGGMTCASCVRRVEKALAKVPGVGQVS
                     VNLATEKATVHTDTSVSREQLVAAVTKAGYEATYVEPEAAPVAAPAHTGELAAVIVSA
                     LLTLPLVLPMLGLDLHLGVWVSLALASIVQFVLGARFYIGGFKAARSGEGNMDLLVAL
                     GTSAAWGLSVYELFAHPGVSAHLYFEAAAVVITLVRFGKWLEARAKRQTTDAIRALDA
                     LRPERARIRDAATGNERDIALADVRNGDVAIVRPGERLPVDGLIREGRTHVDESLITG
                     ESLPVAKEIGARVTAGSINGEGVIAVETTATGAETTLARIIRLVESAQAEKAPIQRLV
                     DRVSAIFVPVILVIALVALVGWLLMGAGVETAVLNAVAVLVIACPCALGLATPAAIMA
                     GTGVAARHGVLIKDPQALEMAHRIRIVAFDKTGTLTVGKPSMTVFEADEGVDRAEVLG
                     LAAAVQRLSD"
BASE COUNT          392 a          619 c          700 g          408 t
ORIGIN      
        1 gccgccgatg tacctgcctc cctacttcga agaaaagcgc cccgaggttt tacatcggct
       61 aatggccgat aatccgctgg cagcccttgt cacacatgcc gccaacgggc tggatgcgaa
      121 ccacgtgcct tttgagttcg acgcaagttt gggcgaacac ggcattctgc gcgctcatgt
      181 ggcgcgtgca aatcctattt gtcaggaaat tgaaagcggt tctgacgtaa tggttatttt
      241 ccagggcgcg tcgggttata tatcgccgtc tttttatccg ggcaaacagg aaacgcatcg
      301 gcaagtgccg acttataact atctggtcgt gcacgcgcat ggccggatca cgatccgcga
      361 cgacgagact ttcgtgcgcg gcgtggttgc gcgccttacc cggaaaatgg aagccggcga
      421 aacggtgccc tggaaaatgg gcgacgcgcc gcctgatttc atccagacga tgctgcaagc
      481 cattgtcggg atcgaaatcg aggtcacacg gctcgttgga aaggcgaaac tgagccagaa
      541 caaggcggca gccgaccgga tcggcgcgat cagcggcgtg cgacggcgtg aaacggacgc
      601 cgcgacagcg ctcgccgacg cgatgttgaa tgcgcctccc cctattgaaa atacaccttg
      661 accttccaat cattggaatg tcgatactgg ttacatcgag ctgaattcga tggctcgcac
      721 tgaaccggga agttttgtca tgtctgtttc cagtactact gccgctgcgt ctacgaccgc
      781 tgaatttgct atcggcggga tgacgtgcgc gtcgtgcgtg cggcgggtcg aaaaggcgct
      841 ggcgaaggtg ccgggcgtgg gacaagtgtc ggtcaatctg gcaaccgaaa aagcgactgt
      901 ccacaccgac acctccgtgt cgcgtgagca acttgttgcc gctgtgacca aggccggcta
      961 cgaagcgacg tacgttgaac cggaagccgc gcctgtcgcc gcgcccgcgc acacgggtga
     1021 actcgcggcg gtgatcgtgt ccgcgctgct gaccctgccg ctggttttgc ccatgctcgg
     1081 gctggacctg catcttggcg tctgggtatc gctcgcgctc gccagcatcg tgcaattcgt
     1141 gctcggcgcg cgcttttata ttggcggctt caaggctgca cgttcgggcg aaggcaacat
     1201 ggatctgctc gtggcgctcg gaacctcggc cgcctggggc ctgagcgtgt acgaactgtt
     1261 cgcgcatccc ggcgtgtctg cccatctcta tttcgaggcg gcggcggtag tcatcaccct
     1321 cgtgcgcttc ggcaaatggc tcgaagcgcg tgccaagcgg caaaccaccg acgccattcg
     1381 cgcactcgac gcactgcgcc ctgagcgcgc tcggattcgc gatgcggcga ccgggaacga
     1441 acgcgacatc gcgctggcgg atgtgcgcaa cggcgacgtg gcaatcgtgc ggccgggtga
     1501 gcgcctgccg gtcgacggcc tgatccgcga agggcgcacg cacgtggatg aatcactgat
     1561 taccggcgaa agcctgcccg tggcgaagga aatcggggca cgcgtgaccg cgggttcaat
     1621 taatggcgaa ggggtgatcg ctgtcgaaac aaccgcgacc ggcgctgaaa cgacgctcgc
     1681 tcggatcatc cggctggttg aatcggcaca ggccgagaag gcgcctattc agcggctggt
     1741 ggaccgggta tcggcgatat tcgtgccggt gatccttgtg atcgcgctcg tggcgctggt
     1801 cggctggctg ttgatgggcg cgggcgtgga aacagccgtg ctgaacgcgg tcgcggtgct
     1861 cgtgatcgcc tgtccgtgcg cgctcgggct ggcgacgccc gccgcgatca tggctggaac
     1921 gggcgtggca gcgcggcatg gcgtgttgat caaggaccca caggcactgg aaatggcgca
     1981 tcggatcagg attgtcgcct tcgataaaac cggcacgctg accgtcggca agccttccat
     2041 gacggtgttc gaggcggatg aaggcgtgga ccgcgcagaa gtgttggggc tggcagcggc
     2101 cgttcagcgg ctcagcgat
//
LOCUS       DATGBK010000194         1807 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_326291, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000194 DATGBK010000000
VERSION     DATGBK010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326291"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            46..948
                     /locus_tag="VKJ77_02840"
     CDS             46..948
                     /locus_tag="VKJ77_02840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase"
                     /protein_id="HMC44242.1"
                     /translation="MAFTLEDKLVVAISSRALFDFEEENEVYEAGDLREYEALQRSRL
                     HVPAKPGIALSLIEKLLALNVDGERRVEVVILSRSDPISGLRAFSSCKEHGLAIERGV
                     FTRGRSPFRYLEPFRASLFLSANSADVRDALAAGFPAATVVPRAPLAASRYPDEIRIA
                     FDGDAVLFSDEAEQVFQAQGLPAFVEHEVGKKDLALANGPLKPLLEALHKLQKLSHDT
                     TRMRIRTALVTARSAPAHERAIRTLMAWNIEIDEAMFLGGLDKGPFLGKFEPDFFFDD
                     QIGHCESARVVTATGHVPSGISNE"
     gene            948..1778
                     /gene="queF"
                     /locus_tag="VKJ77_02845"
     CDS             948..1778
                     /gene="queF"
                     /locus_tag="VKJ77_02845"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235555.1"
                     /note="Catalyzes the NADPH-dependent reduction of
                     7-cyano-7-deazaguanine (preQ0) to
                     7-aminomethyl-7-deazaguanine (preQ1) in queuosine
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0043867 - 7-cyano-7-deazaguanine
                     tRNA-ribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HMC44243.1"
                     /translation="MHTPEHSPLGKPVQYSERYDPTLLFPIGRKSGRDALGLTGPLPF
                     FGTDIWNAYELSWLNRKGKPQIAVATFIVPADSPNIVESKSFKLYLGSFSQTAFDSID
                     EVRAAIRKDVSAVCGANVSVQLVAPYEFGVKLKMEEFEGLSLDRLDLDADVYAPDPSL
                     LRASFGESPVDETLFSNLLKSNCPVTGQPDWGSVQIRYVGVPIDHAGLLRYIISYREH
                     TGFHEQCVEQIFLDVMRECKPERLAVYARYTRRGGLDINPFRTNFNLPLPDNARLARQ
                     "
BASE COUNT          347 a          493 c          552 g          415 t
ORIGIN      
        1 accccgtgta caagctgttc ctggcctgac gagcggacga aacgcatggc tttcacgctg
       61 gaagacaagc tggtagtcgc gatttcatcg cgggcgctgt ttgatttcga agaagagaac
      121 gaagtctacg aagccggcga cttgcgtgaa tacgaggcgc tgcaacgttc gcggcttcat
      181 gttccggcta aacccggcat cgcgttgtcg ctgatcgaga agttgcttgc gctgaacgta
      241 gatggcgagc gccgtgtgga agtggtgatc ctgtcacgca gcgatcccat cagcggtttg
      301 cgcgcgttca gttcgtgcaa ggagcatgga ctggcgatcg aacgcggggt ctttacgcgc
      361 ggccggtcac cgttccggta tctggagccg ttccgagcgt cgctgtttct atcggccaat
      421 tccgccgatg tccgcgatgc cctcgccgcc ggctttcccg ccgcgacggt cgtaccgcga
      481 gcaccgcttg ccgcgagccg gtatcctgac gaaattcgga ttgctttcga cggcgatgcc
      541 gtgcttttct ccgacgaagc cgagcaagtg ttccaggcgc agggattgcc cgcgtttgtg
      601 gagcatgaag tcggcaagaa agatctggcg ttggcgaacg gcccgttgaa accgttgctg
      661 gaagcgcttc acaagctgca aaaacttagc catgacacca cgcggatgcg gattcgcacg
      721 gcgcttgtca cggcgcgatc ggcgccggct catgagcggg cgatccgcac gttgatggcc
      781 tggaacatcg aaatcgacga agcgatgttc ctcggtggat tggacaaagg cccgttcctg
      841 ggcaagttcg aacccgactt tttcttcgac gaccaaattg gccattgcga gtcggcccgc
      901 gtcgtgactg cgacggggca cgttccgagt ggcatatcga acgaatgatg catacgcccg
      961 aacactctcc ccttggcaag ccggtccagt actccgaacg gtacgatccg acgctgcttt
     1021 ttcccatcgg ccgaaagtcg gggcgcgacg cgctcggact cacgggtccg ctaccgttct
     1081 tcggcaccga tatctggaac gcatacgaac tgtcgtggct caaccgcaag ggcaaacccc
     1141 agatcgcggt ggcgacgttc atcgtgccgg cggattcgcc gaatattgtc gagtcgaagt
     1201 cattcaagct gtacctgggg tctttttcgc agacggcgtt tgattccatc gatgaggttc
     1261 gtgcggcgat tcgcaaggac gtttccgcgg tttgcggtgc gaatgtttct gtgcagcttg
     1321 tcgcgcctta tgagtttggc gtaaagctca agatggaaga gttcgagggt ttgtcgctgg
     1381 atcggttgga tctggatgcc gatgtttatg cccccgatcc ctcgttattg cgcgcgtctt
     1441 ttggcgaatc gccggttgat gagacgctgt tttcgaactt gctgaaatcg aattgtccgg
     1501 tgaccgggca accggattgg ggcagcgtgc agattcgtta cgtcggcgtg ccaatcgatc
     1561 acgcgggatt gctgcgatac atcatttctt atcgcgaaca taccgggttt catgagcaat
     1621 gcgttgaaca gatatttctg gacgtgatgc gggagtgcaa acccgaacgc cttgccgtat
     1681 atgcgcgata tacacggcgt ggcggattgg atatcaatcc gtttcggacc aactttaatt
     1741 tgccgctgcc tgataacgcg cggttagcgc ggcagtaagt ccttactgat acgtgaacgt
     1801 gaacgtc
//
LOCUS       DATGBK010000195         4062 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_279793, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000195 DATGBK010000000
VERSION     DATGBK010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4062
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279793"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1555)
                     /locus_tag="VKJ77_02850"
     CDS             complement(<1..1555)
                     /locus_tag="VKJ77_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC44244.1"
                     /translation="MFSTIKGRLGIAMALLGLLLIVIGGLGLWGMSRGNDTTRGLFMN
                     QMPSAVAAGNAEMFTARERLSFDRAALLVGKPSAETAIGRGALMRTRADKEWATYTAL
                     PQGPGEHKLAEDFEAKRLELQKLMDDGYANIRANDADKIVASAEAMQVAFNQLAAFGE
                     ALRKYQFDSAKSDYDNSQETFGDFRLISIAAILAGLAAAMFSWLSLRRSIGRPLEEAL
                     AQFDAIAAGDLRRELNVTSRDEMGQLLSGLAKMQASLVNTVRTVRSGSESIASATKQI
                     AAGNIDLSSRTEEQASALQETASSMDELTGTVKQNAENARQASSLAASASDIANKGST
                     VVSQVVTTMGDINQSSTKIADIITIIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA
                     AEVRSLAQRSSAAAKEIKDLINTSVSRVQTGTTLVGDAGRTMSEIIGAVQRVTDIMGE
                     IAAASEEQSSGIEQVARAVTQMDEVTQQNAALVEEAAAAAQSLEDQAGALKAAVSVFQ
                     LDDRGLESSK"
     gene            1763..2086
                     /locus_tag="VKJ77_02855"
     CDS             1763..2086
                     /locus_tag="VKJ77_02855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006164279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HMC44245.1"
                     /translation="MKSNTVVRALGALAHESRLAIFRALVVAGPEGLAAGDIAQQLGV
                     SPSGLSFHLKDLSHAGLVDARQDGRFIFYSANFDAMSGLIGFLTENCCEGGTCSVSAV
                     SKRTR"
     gene            2141..2563
                     /gene="arsC"
                     /locus_tag="VKJ77_02860"
     CDS             2141..2563
                     /gene="arsC"
                     /locus_tag="VKJ77_02860"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192528.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HMC44246.1"
                     /translation="MAITIYHNPACGTSRNTLALIRNAGVEPEVIEYLKTPPNRNTLS
                     KMIEDAGLSVRQAIREKEKLFAELGLSDTTLTDEQLLDAMLAHPVLINRPFVVTPAGT
                     RLCRPSELLLEILPEAQKGPFSKEDGEVVIDSKGDRVR"
     gene            2563..3315
                     /gene="arsH"
                     /locus_tag="VKJ77_02865"
     CDS             2563..3315
                     /gene="arsH"
                     /locus_tag="VKJ77_02865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012735323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenical resistance protein ArsH"
                     /protein_id="HMC44247.1"
                     /translation="MSSGMHNISHAHVDIPSIDKLAPKSVATHPPRILLLYGSLRPTS
                     YSRLLTLEAERILNHFGAETKVFDPHGLPITDSVPADHPKVAELRALSTWSEGQVWCS
                     PERHGTLTSVFKNQIDWIPLEIGAVRPTQGRTLAVMQVSGGSQSFNAVNALRILGRWM
                     RMVTVPNQSSVAMAYKEFDAGGRMKPSAYYDRVVDVMEELVKFTLLVRDRSSYLTDRY
                     SERRQASPVEATTLANAAMTHESAAPDDEDIE"
     gene            3446..>4062
                     /locus_tag="VKJ77_02870"
     CDS             3446..>4062
                     /locus_tag="VKJ77_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009664292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44248.1"
                     /translation="MNNTLARRSTCGLVTAAILSFTASAAHAAADSVKLGFITDLSGL
                     YSDSDGQGGLEAIRMAIDDFGGKVNGKPIELLYGDHQNKADIAASKAREWIDRDGVNG
                     IIGGTNSATALATNQIAAEKKIPYINVGAGADALTNEQCTPYTVHYAYDTVALANGTG
                     LAVTKQGGKTWYFLTADYAFGKALEKNTSEVVKANGGQVLGAVRHP"
BASE COUNT          822 a         1279 c         1145 g          816 t
ORIGIN      
        1 tcttgctgct ttccagacct cggtcgtcca gctggaacac cgacacagcc gccttcaacg
       61 cgcccgcctg atcctccagc gattgcgccg cggccgcggc ttcttccacc agcgccgcgt
      121 tttgctgggt cacttcatcc atttgcgtga ccgcgcgcgc cacttgttca atgccgctgc
      181 tctgctcttc ggacgccgcc gcgatctcgc ccatgatgtc cgtcacacgc tgcaccgcgc
      241 cgatgatttc cgacatcgtg cggccggcat cgcccaccag cgtcgtgccc gtctggacgc
      301 gcgagaccga cgtgttgatc agatccttga tctccttcgc tgccgccgac gaccgttgcg
      361 cgaggctgcg aacttctgcc gccacgaccg cgaaaccccg gccttgctca ccggcacgcg
      421 ctgcttccac cgctgcgttc agcgcgagga tgttggtctg gaacgcgatg ccttcgatga
      481 tcgtgatgat gtccgcgatc ttcgtcgaac tctggttgat gtcgcccatg gtggtgacca
      541 cttgcgaaac aactgtgctg cccttgttcg caatgtccga tgcgctggca gccaacgagc
      601 tcgcctgacg cgcgttttcg gcgttctgct tcacggtccc ggtcaactcg tccatgctcg
      661 atgccgtttc ctgcaacgcc gacgcctgct cttccgtacg cgatgacaaa tcgatattgc
      721 ccgccgcaat ctgcttggtc gccgatgcaa tggattcact gcccgagcgc accgtgcgta
      781 ccgtgttgac gaggctcgcc tgcatcttcg cgagacccga caacagttgc cccatctcgt
      841 cgcgcgaggt gacgttcagc tcgcggcgca ggtccccggc ggcgattgca tcgaattgcg
      901 caagcgcttc ttcaagcgga cgcccgatcg aacgacgcaa cgacagccag gagaacatag
      961 ccgccgcgag gccggccaga atggcagcaa tgctgataag acggaagtcg ccgaatgttt
     1021 cctgcgagtt gtcgtagtcg ctcttggctg agtcgaattg atacttgcga agcgcttcgc
     1081 cgaacgcagc caactggttg aacgcaacct gcatggcttc agcggaagcg acgatcttat
     1141 ctgcgtcgtt cgccctgata ttggcgtaac cgtcgtccat cagcttctgg agttcaaggc
     1201 gcttggcttc gaagtcctcc gccagtttgt gttcgcccgg accctgcggc agcgcggtgt
     1261 aggtcgccca ctccttgtcg gcacgcgtgc gcatcaatgc cccgcgtcca atggctgttt
     1321 ccgcgctggg cttgccaacc agcaaggccg cacgatcgaa gctgagccgc tcacgggccg
     1381 taaacatttc cgcgttgccg gccgcgacag cgctaggcat ctggttcatg aagagaccgc
     1441 gagtcgtgtc gttaccgcgg ctcattcccc acagtcccag tccgccgatc acgatcagca
     1501 acagacccag aagcgccatg gcaatgccta ggcggccttt tatcgtcgaa aacatgttcg
     1561 tctcactttt ttatatctca catcgatatt caagcagtgg cgcgcgacga tgctgggcga
     1621 acgcaaccga agccgactgc gtcattcggc ccataccctt taacggcaaa ccccggcgtc
     1681 acttgagcga atgcttgaac tgcgtcagct tacatttcaa taattgttga aatgtaaaac
     1741 catttgttgt acgctttacc tcatgaaatc aaacaccgtt gtccgcgcgc tgggcgcgct
     1801 cgcgcatgag tcacgcctgg caatctttcg ggcgctggtc gtagcgggtc ccgagggtct
     1861 ggcggccggt gacatagctc agcaactcgg cgtctcgcca tcgggtcttt cgtttcatct
     1921 gaaagacctt tcacacgccg ggctggtcga tgcgcgtcag gatgggcgct tcattttcta
     1981 ctcagcgaac ttcgatgcca tgagcggact cattggcttc ctcacagaaa attgctgcga
     2041 aggcggcacg tgttcggtga gtgcggtatc gaaacgcacc cgctgaaccg cgttgataaa
     2101 cgagcaagct ctctcttaac gattcatgga gactcacggc atggccatca cgatttacca
     2161 taaccccgct tgcggcacgt cgcgcaatac cctggcgctg atccgcaatg cgggcgttga
     2221 accggaagtg atcgagtacc tcaagacgcc gcccaatcgc aacacgcttt ctaaaatgat
     2281 cgaggatgcc gggctgagcg tccggcaagc gatcagggag aaagagaagc tgttcgcgga
     2341 acttggtctc tccgatacaa cgctaacaga cgaacagttg ctggacgcca tgctggcgca
     2401 tcctgtcctc atcaatcgtc cgttcgtggt gacacccgca ggcacgcgtc tatgcaggcc
     2461 gtccgaactg cttctggaga tcctgccgga agcgcagaaa ggaccgttca gcaaggaaga
     2521 cggtgaggtc gtgatcgata gcaaaggcga ccgggttcgc taatgtcatc aggaatgcat
     2581 aatatcagcc acgcgcacgt cgacattccg agtatcgaca agctggcgcc caagtccgtt
     2641 gcaacccatc cgccgcggat tctgctgctg tatggttcct tacgccccac gtcatacagc
     2701 cgcctcctga ccctcgaggc cgaacgcatc cttaaccatt ttggcgccga gacaaaagtc
     2761 ttcgatccgc acggcctgcc gatcaccgac agcgttccag ccgatcatcc gaaagtagcg
     2821 gagctacggg cgttgtccac gtggtcggaa ggacaagtct ggtgcagccc ggaacggcat
     2881 ggaacgctaa cttcggtatt caagaaccag atcgactgga ttccgctgga aatcggcgca
     2941 gtgcggccaa cgcaaggccg cacgctcgcg gtcatgcagg taagcggtgg atcgcagtcg
     3001 ttcaatgccg tgaacgcgtt acgcatcctc ggccgatgga tgcggatggt gacggttccg
     3061 aaccagtcat ccgtagccat ggcgtacaag gagttcgatg ccggcggccg catgaaaccg
     3121 tccgcgtatt acgaccgcgt agtggacgtc atggaggaac tggtcaagtt cacgttgctt
     3181 gtgcgcgatc gttcgtctta cctcactgat cgctatagcg agcgcaggca agcgtcgccg
     3241 gtggaagcta cgacgctcgc taacgctgcg atgactcatg aaagcgccgc gccggatgat
     3301 gaagacatcg agtagcgcct taacctccgt gctgtaagcc ttgacttcat tcgtcccaag
     3361 cggatatttt cgaccctgac ggattgctcg cacgagccgc ccttcaagca tatcgagcat
     3421 ataccgagaa ccaatggaga cacgaatgaa caacacactc gcccgacgct ctacgtgcgg
     3481 cctcgttacg gcagccatcc tgagcttcac cgcgagcgcg gcgcatgcgg cagccgactc
     3541 agtcaagctc ggcttcatta cagacctttc agggctctac tccgactccg acggccaggg
     3601 gggcctcgaa gccattcgca tggcgatcga cgacttcggc ggcaaggtga acggcaagcc
     3661 catcgaactg ctgtatggcg atcaccagaa caaggcggac attgcggcat cgaaagcgcg
     3721 cgagtggatc gaccgcgacg gcgtcaacgg gatcatcggt ggtacgaatt cggccaccgc
     3781 actagcgacc aaccagattg ccgctgaaaa gaagattccg tacatcaacg tgggcgccgg
     3841 tgccgatgcg ctgaccaacg agcaatgcac gccctacacg gtccactacg cctacgacac
     3901 cgtcgcgctc gccaacggca ccggtctggc cgtgacgaag caaggcggca agacctggta
     3961 cttccttacc gccgactatg ccttcggcaa ggcactggaa aagaacacgt cggaggtcgt
     4021 gaaagcgaat ggcgggcagg tgctcggcgc ggtgcggcat cc
//
LOCUS       DATGBK010000196         1725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_187516, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000196 DATGBK010000000
VERSION     DATGBK010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187516"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1106)
                     /locus_tag="VKJ77_02875"
     CDS             complement(<1..1106)
                     /locus_tag="VKJ77_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004546848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HMC44249.1"
                     /translation="MNQVVALIGALLLVALNGFFVAAEFGLVKLRATRVQAIARSNGL
                     PGRLLARVHGKLDAYLSACQLGITLASLGLGWLGEPAFAQLLHPLFALAGIESVKLID
                     AVSLFFAFSCISFLHIVVGELAPKSWAIRRAEQVGLWVAMPLYGFYWAMYPFIWVLNS
                     SANFVLRLLGLGAEHGGDAHYSTDELKLILRGRRLSGASTAALPDAPGLGGSAGSAYN
                     ADEWNTIAHSLDFSRMTVSDLMRPNHEMVGLRNDVPMRDNMQVIARHRFSRYPLFADA
                     SGEHVLGMIHLKDLLLARNGAGRGLLQGLTRPDTKQDELARHVRPVQYVAGNLSALEL
                     FRRFRKGAPHFALVGRKGQKPIGFLTLDNLLGALV"
     gene            complement(1168..>1725)
                     /locus_tag="VKJ77_02880"
     CDS             complement(1168..>1725)
                     /locus_tag="VKJ77_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HMC44250.1"
                     /translation="SGVEQQVKLIEQFIDTTRAETKTLTLDRAPLALRHLMEQSAAEA
                     RASLASTRQVTLHVESELVEEQISADSERLTQALWLMFAFATEASAAGSKVVLNALVE
                     GGAFSAVVTLTASQKALLDPDVPHVLEAFARTQATLPREAARIAWVLALCKRVAEAHG
                     GTFEHDDFADGAAVALTFRVPLSGA"
BASE COUNT          370 a          575 c          502 g          278 t
ORIGIN      
        1 acgagcgcgc ccagcaggtt gtcgagcgtc agaaagccta ttggcttttg ccccttgcgc
       61 ccgaccagcg cgaaatgagg cgcgcccttt cgaaagcgcc ggaacaactc cagcgccgat
      121 agattccccg ccacgtattg caccggccgc acgtgcctgg ccagttcatc ctgcttcgtg
      181 tctggccggg tcaagccttg cagcagcccg cgcccggcgc cattgcgtgc aagcagcaag
      241 tccttcaggt gaatcatgcc gagcacgtgt tcgccggagg catcggcgaa aaggggatag
      301 cggctgaaac ggtggcgcgc gatcacctgc atgttgtcgc gcatgggcac gtcgttgcgc
      361 aggccgacca tctcgtggtt cgggcgcatc aggtctgaaa ccgtcatgcg gctgaaatcg
      421 agcgaatggg caatggtgtt ccactcatca gcgttataag cagaccccgc agacccgccc
      481 aatccgggtg cgtccggcaa cgcagccgtc gatgccccgc tcaggcgccg gccacgcagg
      541 atcaacttga gttcatcggt ggaatagtga gcgtcgccgc catgttccgc cccgagcccg
      601 agcaatcgca acacgaaatt cgcgctcgaa ttcagcaccc agatgaacgg gtacattgcc
      661 cagtagaaac cgtagagcgg catggcgacc cacaggccga cctgttccgc gcgccggatc
      721 gcccacgatt tcggcgcgag ctcacccacc acaatatgca ggaacgaaat gcaggagaac
      781 gcgaagaaca gcgagacggc gtcgatcagc ttcaccgatt cgataccggc aagcgcgaac
      841 aacggatgca gcaattgagc gaacgccggt tcgcccagcc agccaagccc gagcgacgcc
      901 agcgtgatgc cgagctgaca ggcagacaaa tacgcgtcga gcttgccgtg gaccctggcc
      961 agcaaccggc cgggcaaacc attcgaccgt gcgatcgcct gaacgcgcgt ggcgcgcagt
     1021 ttgacgagcc cgaactcggc cgcgacgaaa aacccgttca acgcgacgag caacaaggca
     1081 ccaattagcg cgacaacctg attcaaagca acctgctcca cgaaatgaaa ccgccagtat
     1141 agaggtgcaa gctgaccgaa agttaaatca ggcgccgctc aacggcacgc gaaacgtgag
     1201 cgcaacggcg gcgccatcgg cgaaatcgtc atgttcgaag gtcccaccat gcgcttcagc
     1261 cacccgtttg cacagggcga gcacccacgc gatacgcgcg gcttcccgtg gcaacgttgc
     1321 ctgggtgcgg gcaaacgctt caagcacatg cggaacgtca ggatccaaca gcgctttctg
     1381 cgatgccgtt aacgtgacga ccgcgctgaa cgcgccgccc tccaccagcg cgttcagcac
     1441 caccttcgat cccgccgcgc tcgcctcggt ggcgaacgca aacatcagcc agagcgcctg
     1501 ggtgagacgt tcgctgtcgg cactgatctg ctcttccacc aactccgatt cgacgtgcag
     1561 cgtcacctgc cgcgtgctcg ccagactcgc gcgtgcctcc gctgcgctct gttccatcaa
     1621 gtgccgtagt gcaagcggcg cacggtcgag cgttagcgtc ttcgtctcgg cacgggtggt
     1681 atcgataaat tgctcgatca gcttcacctg ctgttccacg ccgga
//
LOCUS       DATGBK010000197         2602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_326318, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000197 DATGBK010000000
VERSION     DATGBK010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2602
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326318"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..570)
                     /locus_tag="VKJ77_02885"
     CDS             complement(<1..570)
                     /locus_tag="VKJ77_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC44251.1"
                     /translation="MLKHSLIAAAVAFFAAGCTMAPKYERPAAPVDQTFPTGGVYDKQ
                     PDATSSAAPGDSAQAKPAVDIGWRDFFVDARLQQIVAIALKNNRDLRVSMLNVAAARS
                     QYQITRAELLPTLDAVGSQTKSRTPRDLSLFNQTISNQYSVGVNASWEIDFFGRIQSL
                     KDQALEQYFALAETRKAAEISLVSQVADQY"
     gene            complement(572..>2602)
                     /locus_tag="VKJ77_02890"
     CDS             complement(572..>2602)
                     /locus_tag="VKJ77_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC44252.1"
                     /translation="VGFSINTLSMFGLVLAIGLLVDDAIVVVENVERVMAEEGLSPRD
                     ATRKAMDQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMILSVLTALI
                     LTPALCATLLKPIEKGHHEEKKGFFGWFNRTFAKSQDKYHSGVEHVIKRSGRWLIIYL
                     VVIVAVGFLFVRLPKSFLPDEDQGTMFVLVQAPAGSTQERTAKVLADVTNWLLTDQKD
                     IVEAVFTVNGFSFAGRGQNSGLVFVRMKDYGLRQRADQKVGALVGRMFGHFAGYKDAM
                     IFPVNPPSIPELGTASGFDFELEDRSGLGHAKLMEARNMLLGMASKDPTLAQVRPNGL
                     NDTPQFKVNVDREKANALGLSPATIDQVFSIAWASSYVNNFLDVDNRIKKVYVQGDAQ
                     FRMNPEDLNKWYVRNTAGAMVPFGAFGTGEWIYGSPKLERYNGISAVEIQGAAAPGKS
                     TGQAMQAIEAIAAKLPAGIGYEWTGLSLQERQSGSQAPILYGISILVVFLCLAALYES
                     WSIPFSVIMVVPLGILGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARDL
                     RSQGRTTVEAAMEAARQRLRPILMTSLAFILGVLPLAISNGAGSASQHAIGTGVIGGM
                     LTATFLAIFMIPMFFVVISKISHDKGTPQHTHGGDGNDGGHGGTPAPAKEGH"
BASE COUNT          530 a          871 c          735 g          466 t
ORIGIN      
        1 atactggtcg gcgacttgcg acaccagcga gatttccgcc gccttgcgtg tttccgccaa
       61 cgcgaaatac tgctcgagcg cctggtcctt caagctctgg atccgcccga agaagtcgat
      121 ttcccaagac gcatttaccc cgaccgaata ctggttcgag atggtctggt taaacaacga
      181 cagatccctc ggcgtgcgcg acttcgtctg cgacccgact gcgtcgagcg tgggcagcaa
      241 ctcggcacgc gtgatctgat actgcgagcg cgccgctgcc acgttgagca tggacacgcg
      301 caggtcacgg ttgttcttca gcgcgattgc aacgatctgc tgcaagcgtg catcgacgaa
      361 gaaatcgcgc cagccgatgt ccaccgccgg cttcgcctga gcggaatcgc caggcgcagc
      421 cgacgacgtt gcgtccggct gcttgtcata gacgccgccc gtcgggaacg tctggtcgac
      481 gggcgccgcc gggcgctcgt acttcggcgc catcgtgcag cctgccgcga aaaacgcgac
      541 cgctgccgct atcaaggagt gttttagcat ctcaatgtcc ttccttggcc ggagcaggcg
      601 tgccaccgtg accaccatca ttgccatcgc cgccgtgggt gtgctgcggc gtacccttgt
      661 cgtggctgat tttgctgatc accacaaaga acatggggat catgaaaatg gccaggaagg
      721 ttgccgtcaa catcccgccg atcacgcccg taccaatggc gtgctggctc gccgaacccg
      781 cgccgttact gattgcgagc ggcaacacgc cgagaatgaa cgccagcgac gtcatcagaa
      841 tcgggcgcaa ccgctgacgc gccgcttcca ttgccgcttc aaccgtggtc ctgccctggc
      901 tgcgcaaatc gcgtgcgaat tccacgatca aaattgcgtt cttcgccgac aaccccaccg
      961 tagtcagcaa gccgacctgg aagaacacgt cgttttccag cccgcgcaag gtagccgcga
     1021 gcaacgcgcc caagataccg agcggcacga ccatgatcac cgagaacgga atcgaccagc
     1081 tttcgtacaa cgcagcaaga cacaagaaca cgacgaggat cgagatgccg tacaagattg
     1141 gcgcctgcga acccgactgg cgttcctgca gcgacaagcc cgtccattcg tagccaatac
     1201 ccgccggcaa cttcgccgcg atcgcttcaa tagcctgcat ggcctggccc gtcgacttgc
     1261 ccggcgcagc cgcaccctgg atttccactg cggaaatccc gttgtagcgt tccagcttcg
     1321 gcgaaccgta gatccattcg ccggtaccga atgcgccgaa cggaaccatg gcgccggcgg
     1381 tattgcgcac gtaccacttg ttcaggtctt ccgggttcat gcggaactgc gcgtcgccct
     1441 gtacgtagac cttcttgatc cggttatcga cgtccaggaa gttgttcacg tacgacgaag
     1501 cccacgcgat cgagaacacc tggtcgatgg tcgcaggcga caggcccagc gcgttcgcct
     1561 tctcgcgatc gacgttcacc ttgaactgcg gcgtgtcgtt caggccgtta ggacgaacct
     1621 gcgcgagcgt gggatctttc gacgccatgc cgagcaacat gttgcgcgct tccatcagct
     1681 tcgcgtgacc gagacccgag cgatcctcca gctcgaagtc gaagcccgaa gccgtgccca
     1741 gttccggaat ggacggcggg ttgaccggga agatcatcgc gtccttatag ccggcgaagt
     1801 gcccgaacat ccgtccgacc agcgcgccca ccttctggtc cgcgcgttgc cgcagcccgt
     1861 aatccttcat ccgcacgaac acgaggcccg agttctggcc gcgacccgcg aagctgaagc
     1921 cattcaccgt aaagaccgct tcgacgatgt ctttctggtc cgtcagcagc cagttggtta
     1981 cgtcggcaag caccttggcc gtgcgctcct gcgtcgaacc cgccggcgcc tgaacgagca
     2041 cgaacatggt gccctggtct tcgtcaggca agaacgactt cggcaggcgg acgaacagga
     2101 aacccaccgc gacgatcacc accagataga tgatgagcca gcgcccggag cgcttgatca
     2161 cgtgctccac gccgctgtgg tacttgtcct ggctcttcgc gaaagtgcgg ttgaaccagc
     2221 cgaagaaacc cttcttctct tcgtggtgac ccttctcgat cggcttcagg agagtcgcgc
     2281 acaatgccgg cgtcaaaatc aacgcggtca gcacggacaa gatcatggcc gcgacgatgg
     2341 tcagcgaaaa ctgccggtag atcgcgccca ccgaaccgcc cgagaacgcc accggcacaa
     2401 acacggccga cagcacgagc gccacgccga ccagcgcgcc ggtaatctgg tccatcgcct
     2461 tgcgggtcgc gtcccttgga gagagtccct cctcggccat cacccgctcg acgttttcca
     2521 ccaccacgat tgcatcgtcc accagcaagc cgatggcgag caccagcccg aacatggaga
     2581 gcgtattgat ggagaaaccc ac
//
LOCUS       DATGBK010000198         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_25607, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000198 DATGBK010000000
VERSION     DATGBK010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25607"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..342
                     /locus_tag="VKJ77_02895"
     CDS             <1..342
                     /locus_tag="VKJ77_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC44253.1"
                     /translation="FAPDAIAAIHNYGWPGNVRELINRVRRAIVMAEGRLIGAHDLEL
                     GEFAECVPMSLAQAREVGERQAIEMALLRNRGRVGDAARELGVSRVTLYRILSAYNMR
                     DAETPSGLGLD"
     gene            complement(393..1106)
                     /gene="mnmD"
                     /locus_tag="VKJ77_02900"
                     /pseudo
     CDS             complement(393..1106)
                     /gene="mnmD"
                     /locus_tag="VKJ77_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490324.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD"
     gene            1391..>1709
                     /locus_tag="VKJ77_02905"
     CDS             1391..>1709
                     /locus_tag="VKJ77_02905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HMC44254.1"
                     /translation="MAAKKILFLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKSGD
                     KIKTAIHDFEGDQTYTEKPGHLFALNANFDDVDVTRYDALMIAGGRAPEYLRLNERVI
                     EIVR"
BASE COUNT          374 a          482 c          531 g          322 t
ORIGIN      
        1 ttcgcccctg acgcgatcgc cgcgatccat aactatggtt ggccgggcaa tgtgcgggag
       61 ctgatcaacc gcgtgcggcg tgcgatcgtg atggctgaag gccggttgat cggcgcgcat
      121 gatctcgaac tcggcgagtt cgcggaatgc gtgcccatgt cgcttgcgca ggcgcgcgaa
      181 gtgggcgaac ggcaggccat tgaaatggcc ttgctgagga atcgcgggcg cgtaggcgac
      241 gcggcgcgcg aactcggtgt gtcccgtgtg accctgtacc ggatcttgtc cgcctacaac
      301 atgcgagatg cagagacgcc gtcgggtctt ggcctggatt agtccctcac ccgcaatgcg
      361 cacgcgttat acggctttcc aacagcgtct cagcgtggcg caaagcggcc catgagcatc
      421 gcgcgtttcc acccaaagcc tgccactttc cgatattcaa aacccgcttg caacagcgcg
      481 cgtttcacat cgccggcgct ggtgtaggtg gaaaacgtcg cgtcgtcaac tgcctgggca
      541 gcgagtgaat tgaagatcgc gggcgtccag agttcaggat ttttcgccgg tgcaaaaccg
      601 tcgagataaa acgcgtcaac acgcaagcgc agtgtgggca agatatccac cgcgtcgccg
      661 aatataagcg tcagcgagac gctgccttcg tcgaaatcca gttggtgcgt gccgggctcc
      721 agcgccggcc acgccgcagc aagcgtgtcg gctagtgcga ggaccgatgc atcgtccacg
      781 gtcaccgcga aggcgcgacg cagatcgtcc gccgaaaacg ggtgcttttc gatcgacaca
      841 aaatgcagcc gttcgctgcg tacgggatcg gcgcgccaag cagcccatgt cgtcaggaaa
      901 ttgataccca tgccaaagcc ggtttcgagc acggtgaacg ctcgacgtcc ttgccatcgt
      961 ccgggcaagc cattgccctg caaaaataca tgctgcgact gggcaagact gcccacgatg
     1021 ctgtgataga tatcgccgta ttcaggcgaa tacggcgacc cattggggcg gaaggcaagc
     1081 gtggcgggaa tcagaggatc ggtcatgcgg gtcgattgtc agggagggac tgcggggaat
     1141 catgtttgac gggccacggc cgcgtcattg tcgcgcggcc cggccaaggt tcagcacgtt
     1201 agcaaaaacg gctggcctca ggcgaaaaat gcgctgcaga aaatcctttc ccctgcccga
     1261 tgcttaacag caatttatcc ggcgagcggc aaagtatccg ttctgccatg aagacaagct
     1321 aagataaatc gagtggctcc ggtgtgaccg ggccgcgttc gcgcgtgatt ttctttgaca
     1381 ggagaacaag atggcagcca agaagatctt atttctgacc ggcgattttg cggaagatta
     1441 tgaaacgatg gtgcctttcc aggcgctgca aatggtcggc catacggtgc acgccgtgtg
     1501 ccctggaaag aaaagcggag acaagatcaa gacagcgatt cacgacttcg agggcgacca
     1561 gacctacact gaaaagccgg gacatctgtt cgcgctgaat gcaaatttcg atgatgtcga
     1621 tgtcacccgc tacgacgcgc tgatgatcgc cggcggccgt gcgccggaat atctgcggct
     1681 gaacgaacgg gtgatcgaaa tcgtacggc
//
LOCUS       DATGBK010000199         2259 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_164375, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000199 DATGBK010000000
VERSION     DATGBK010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164375"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VKJ77_02910"
     CDS             complement(<1..198)
                     /locus_tag="VKJ77_02910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44255.1"
                     /translation="MTPPELLALVCFFAVVRVALSLRPDPVSVPVLADGVGTASARPA
                     PSARKIVREYLDAFIVAGLVAL"
     gene            complement(245..739)
                     /locus_tag="VKJ77_02915"
     CDS             complement(245..739)
                     /locus_tag="VKJ77_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44256.1"
                     /translation="MIDVRDIFGALTDANVRFVVIGGVALTLHGSSYVTQDIDLAYER
                     TRENAKRMAAALARFSPRPRGFPSDVPFIFDEQTLLGVEILTLETSAGDLDLLATVAG
                     LGGFAEVDAAAQTMTFEGRAVRVLSVEGLIAAKTAAGREKDQPGLIELEALREARSLR
                     DGPN"
     gene            complement(736..933)
                     /locus_tag="VKJ77_02920"
     CDS             complement(736..933)
                     /locus_tag="VKJ77_02920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44257.1"
                     /translation="MDKDVLARILNPAPGSALARARDYGIDLTLLARNIALTDDERLQ
                     NAARNLQMARTLREMRDANKP"
     gene            complement(976..1608)
                     /locus_tag="VKJ77_02925"
     CDS             complement(976..1608)
                     /locus_tag="VKJ77_02925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44258.1"
                     /translation="MYHALIATLLAITTPATTSTPDFLRDRIVCPAHKGDYTNPTGEA
                     VWEWTQTLPFNGDSRDDYGGKETPTLAVDPILGDFNVGADIHGHSGGGGGMRAFVDVQ
                     SRSFVFCQNVDTASIIGIYQYLRMPYTLPKATASSVHFRSGLGLGSSVDTVRHIYGPA
                     QIKRLKNDLSMLIYDRETPVSPGNSTIYGETTMFWFRAGRVVGFYRITGV"
     gene            complement(1608..>2259)
                     /gene="trmD"
                     /locus_tag="VKJ77_02930"
     CDS             complement(1608..>2259)
                     /gene="trmD"
                     /locus_tag="VKJ77_02930"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: protein motif:HMM:TIGR00088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HMC44259.1"
                     /translation="PEMFAPVIGLSILGRAIERGLVDIRMHNILDALEPGERADARPY
                     GGGPGMVLRIEPLSSILDGIVAGAPAGEKRRIVLTAPSGTPFQHADAEAFASLDRLVL
                     ICGHYEGIDERLGAIYPLEAFSLGDFVLTGGEIPAMAFLDATVRQLEGTIAADSLAAE
                     SFVNDAELDHPSYTRPPTFRGVDVPAVLLSGDHAAIAEWRREQSRARAIARKGPPA"
BASE COUNT          467 a          645 c          700 g          447 t
ORIGIN      
        1 gagcgcgacg agccccgcaa caataaacgc atcgagatac tcgcgcacga tcttgcgcgc
       61 ggatggtgca ggccgcgcgc ttgcggtgcc aacgccatcg gcaagaacgg gaacggatac
      121 gggatccggc cgcaaactaa gtgcgacacg cacaacggca aaaaagcaaa caagcgcaag
      181 aagttcaggt ggagtcacga tagagtcgcc ttacccgggt agagcggtaa tggtttctaa
      241 cgaatcaatt cggaccgtct ctcaaggaac gggcttcgcg aagagcctca agctcgatca
      301 atccaggctg gtctttctcg cgtccggcgg ccgtttttgc ggcaataagc ccctcgaccg
      361 aaagaacgcg gaccgccctg ccctcaaacg tcatcgtctg ggcggccgca tcgacctccg
      421 caaatccgcc cagccccgcg acggttgcaa ggaggtcgag gtcgcccgcg gacgtctcta
      481 acgtcagaat ctccacgcca agtagcgtct gttcgtcgaa gatgaagggg acgtcgctcg
      541 ggaatccacg cgggcgtggg gagaagcgcg caagtgctgc ggccatgcgt ttcgcgttct
      601 ctcgcgttcg ttcgtacgct aaatcaatat cttgcgtgac gtaggacgag ccgtgaagcg
      661 ttagtgcaac gccgccaatg acgacgaatc gaacgttcgc gtcggtcagc gcaccaaaaa
      721 tatcgcgcac atcgatcacg gtttgttagc gtcgcgcatt tctcgtagtg tgcgtgccat
      781 ttgcaggttt cgtgccgcat tttgcagccg ctcgtcgtct gttagcgcga tattgcgcgc
      841 gagcaatgtg aggtcgatgc cgtagtcgcg tgcgcgggct agggccgaac ccggagcggg
      901 attgagaatc cgcgccagca cgtctttatc catgatgttc agtatatcac tcggtgtaag
      961 ccagtcgaca cgcgttcaaa cgccggttat tcggtagaat ccgacgacgc ggcccgctcg
     1021 gaaccaaaac atcgtcgtct caccgtatat tgtgctgttg ccagggctga cgggtgtttc
     1081 ccgatcgtaa atgagcatgc tcaagtcgtt ctttagtcgt ttgatttgag cggggccgta
     1141 gatgtgtcga acggtatcga ctgacgatcc taaccccagg ccgctgcgaa aatgcaccga
     1201 tgatgcagtc gcttttggaa gtgtatatgg catccggaga tattggtaga tcccgattat
     1261 cgaggcggta tcgacgtttt ggcaaaaaac gaatgatcgg ctctgcacat cgacaaatgc
     1321 gcgcattccg ccaccgccgc cggagtgacc gtgaatgtcg gcacccacgt taaaatcacc
     1381 taagatggga tcgacagcaa gcgttggcgt ttctttgcca ccatagtcgt cccggctgtc
     1441 gccattaaat ggcagtgttt gggtccattc ccacaccgcc tcacctgtcg ggtttgtata
     1501 atcgcccttg tgggccggac agacaatgcg atcgcgcaga aaatcgggcg tggaagtggt
     1561 ggctggagtc gttattgcga gtagtgttgc gataagtgca tggtacatca cgctggcggt
     1621 cctttgcggg cgatggcgcg ggcgcgggat tgttcgcggc gccattccgc tatagcggcg
     1681 tggtcgccgg aaagtaatac ggcggggacg tcgacgccgc ggaatgttgg ggggcgcgtg
     1741 tacgacgggt ggtcgagttc ggcatcgttg acgaacgatt cggcggccag cgaatcggca
     1801 gcaatcgtgc cttcgagttg gcggacagtc gcatccagaa acgccatcgc tggaatttcg
     1861 ccgccggtca gcacgaaatc gccgagcgaa aatgcctcga gcggatagat ggcgcccagc
     1921 cgctcgtcga tgccctcgta gtgtccgcaa atgagcacga gccggtcgag cgaagcgaac
     1981 gcttcggcgt cggcatgttg gaacggcgtg cctgatggcg ccgtgagcac gatgcggcgt
     2041 ttctcgcccg ccggtgcgcc ggcgacgatg ccgtcgagga ttgaggaaag cggctcgatc
     2101 cgcagcacca tccccggccc cccgccatac gggcgcgcat cagcgcgttc ccccggctcg
     2161 agcgcgtcga gaatattgtg catccgaata tcgaccagcc cgcgctcgat ggcccgtcct
     2221 aagatcgaga ggccgatgac cggcgcaaac atctcggga
//
LOCUS       DATGBK010000200         3972 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_2359, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000200 DATGBK010000000
VERSION     DATGBK010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3972
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2359"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..1595)
                     /locus_tag="VKJ77_02935"
     CDS             complement(138..1595)
                     /locus_tag="VKJ77_02935"
                     /inference="COORDINATES: protein motif:HMM:NF015831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HMC44260.1"
                     /translation="MCAQFTAYTGATASATDAIAIGTGAQATNTEDVAIGPGAIAGVS
                     GGGIRNTAIGSHATATGGQSTAIGDFSSATGNFGVASGEGSVASGLGSSAYGAGSTAS
                     GVLSTAIGEGASASGASAYAGGNFATASGASSVALGVSATAQGGGSIALGNGAVAGLV
                     GPGTTPTNDVAIGSGAGATAGSSMALGANADATADGGVALGANSIANRAAGTFVDPIS
                     GTSFTTLMGAVSVGSSGSLRQIINVAPGTQLTDAVNLGQLDSAVVSLNHAIAAQAAAG
                     APPAANPGTGSGSGSAPTFISGNPTTYSAPVASGSNATSAGSGSAASAANSTAVGTGA
                     QAAAANSVALGANSVASTANSISVGSADNERTIGNLAPGISGTDAVNVNQLNASVGSA
                     VTQANQYTNSQVQSVRNDANGGTASAMAVAGLPQPSAPGKSMVSIASSVYQGQTGYAL
                     GVSTITASGRWVYKASLTSNSRGATGGVVGAGYEW"
     gene            1654..2139
                     /locus_tag="VKJ77_02940"
     CDS             1654..2139
                     /locus_tag="VKJ77_02940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HMC44261.1"
                     /translation="MTQNQSDSDFLPLKVVSVGRDGKRRFDKRDRQRLIEACLQPGVS
                     VAGMALRAGVNANLLHRWICEHQKEYRGTRAMQVSGDAAAFVPVVEIARADPLQPLPK
                     LPPPHREVTREAQRPAAPSRLTVEMPNGITLRLECGAQDATLVSAMIETLGRYDVPTG
                     R"
     gene            2120..2473
                     /gene="tnpB"
                     /locus_tag="VKJ77_02945"
     CDS             2120..2473
                     /gene="tnpB"
                     /locus_tag="VKJ77_02945"
                     /inference="COORDINATES: protein motif:HMM:NF017528.4"
                     /note="TnpB, as the term is used for proteins encoded by
                     IS66 family insertion elements, is considered an accessory
                     protein, since TnpC, encoded by a neighboring gene, is a
                     DDE family transposase; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HMC44262.1"
                     /translation="MFRLDAELRVYLHRDAVDFRNGINGLVILVEQSMQLDPFARAVF
                     AFRNKRANRIKLLFYERSGFWLMMKRLEADRFVWPRRQQAVMELTTEQLHWLLEGIDI
                     DAVRRHPSRQYRHVS"
     gene            2578..>3972
                     /locus_tag="VKJ77_02950"
     CDS             2578..>3972
                     /locus_tag="VKJ77_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HMC44263.1"
                     /translation="MNTDARHPSPEDDLKQLSPDALIARILELQSQNQQLAQRLGQLE
                     ELFRLAQLKRFAPSSEKLKDRVFDEAEQIAATEPADDDPDDAFALPDTGLPEVDKPER
                     GKRGRKPLPAELPRQRIEYDLPEEQKICPCCQNALHRMGEEMSEQLHIEVKASVLQHV
                     RFKYACRACERNAEHTPIVTAPMPRQPLPGSTASAAMIATVTTGKYVDGTPLYRMEHA
                     LARAGIAVGRGTLANWIIRPAELHYSRLYEAMRQTLLSQPLIHGDETTVQVLKEEGKT
                     PQSTSYMWTYRSAGDSEQPVVLFDYQPGRGQQYPQAFLAGYEGMLMTDGYSAWRTLKG
                     ATHFGCIAHSRRLFVEAHKGQKKKTGGRALQALEYFKALYQVETLARAKPPDGETQAH
                     YTYRLRRQHSVPLLEAFKAWLDTQALQVLPESLLGKAISYTRNQWKYLSRYVIDGRAP
                     VDNNILERDIRPFAT"
BASE COUNT          753 a         1232 c         1265 g          722 t
ORIGIN      
        1 gcgacatatg ctgatcgtat gaggcagtga ccggccactt tcagccattc ggcatgacgc
       61 cgtaaatcgg tgacaattat cggcctttcc gcgctcatgg cttggttaca gtcgcgtcgc
      121 actgacgtgt tgtatctcta ccattcatag cctgcgccga ccacgccccc cgtcgcgccc
      181 cggctgttgg atgtcaacga tgccttgtac acccatcggc cgcttgcagt gatggtcgat
      241 acgccgaggg cgtacccggt ctgtccctga tagacactgc tggcaatcga caccatgctc
      301 ttccccggcg cgctgggttg cggcaagccc gccacggcca tcgccgatgc ggttccccca
      361 ttggcatcgt tgcgcacgct ctgtacttgg ctgttggtgt attgattggc ctgcgtcacc
      421 gcgctaccga cactggcgtt caattgattg acgttcaccg cgtcggtccc gctgatcccg
      481 ggcgcgagat tgccgatcgt gcgctcgttg tccgctgagc cgacagaaat tgagttcgcc
      541 gtggacgcga ccgagttcgc ccccagtgcc acggaattgg ctgccgctgc ctgcgcaccg
      601 gttcccacgg ccgtgctatt ggcggcagac gccgcgctgc cgctacccgc ggacgtggca
      661 ttcgagccgc tcgcgaccgg cgcggaataa gtggttgggt tgccagagat gaaagtcgga
      721 gcggagcctg atccggagcc agtccccggg tttgcggccg gaggcgcccc agcggctgct
      781 tgcgcggcga tcgcgtggtt cagtgagacg accgcgctgt ccaattgacc gaggttgacg
      841 gcgtccgtta actgcgtgcc gggagcgaca ttgataatct ggcgtagtga tccagacgag
      901 ccgaccgata ctgcgcccat cagggtcgtg aagctggtcc ccgagatcgg gtcgacgaag
      961 gtccctgccg cgcgattcgc gatcgaattc gcgcccaggg ccaccccgcc gtcggccgtc
     1021 gcgtcggcgt ttgcgcctag cgccatcgac gatcccgctg tagcgcccgc acccgagccg
     1081 atcgcaacgt cgtttgtcgg ggtcgtcccc ggacccacga gaccggctac cgcgccgttg
     1141 cccagggcaa tgctgccgcc tccttgagcc gtcgcggaca caccgagcgc aaccgacgag
     1201 gctcccgaag cggtggcgaa gttgccgccg gcataggcgc tagcgcctga agcgctggcc
     1261 ccttcgccga tcgcagtgct aagcacgccg ctcgcggtgc tacctgcgcc atacgcactg
     1321 ctgcctaagc ccgatgccac gctgccttcg ccgctggcta cgccgaagtt gccggtcgca
     1381 ctgctgaaat cgcctattgc ggtggattgg ccgccggtcg cggtcgcgtg gctgccgatg
     1441 gccgtattac ggatgccgcc gcctgaaacg cctgcgatag cgccgggacc gatcgcgacg
     1501 tcctcggtat tggtggcctg cgcgcccgtg ccgatggcaa tagcgtcagt cgcgctggcg
     1561 gtcgcccctg tgtaagcggt gaattgagcg cacatggtgt cttgagattg gagggcgcag
     1621 gatgtgtcca ctgaaaatca gtggacacct tccatgacac agaaccaatc agattcagat
     1681 tttttgccgc ttaaggtcgt cagcgtgggt cgggacggca aacggcgttt tgacaaacgg
     1741 gacaggcaga ggttgatcga ggcttgcctg cagcccggcg tatcggtagc gggcatggcg
     1801 ctgagggctg gcgtgaacgc gaatttactg caccggtgga tctgcgagca ccagaaggaa
     1861 taccgcggca cgagagcgat gcaggtgtca ggagacgcgg cggcgtttgt tccggtcgtc
     1921 gagatcgctc gcgccgaccc gctgcagccg cttcccaaat tgccgccgcc gcaccgcgaa
     1981 gtcacgcgtg aagcgcagcg cccggcggcg ccatcacgct tgacggtgga aatgcccaac
     2041 ggcatcacgc tcaggctcga gtgcggtgcc caggacgcga cgctggtgtc ggcgatgatt
     2101 gaaacgcttg ggcgctatga tgttccgact ggacgctgaa ctgcgggtct acctgcaccg
     2161 cgacgcggtc gattttagaa acgggattaa tggtctcgtt atcctggtcg aacagtccat
     2221 gcagcttgac ccatttgcgc gtgcggtctt cgccttccgt aacaagcggg ccaatcgcat
     2281 caagctgctg ttctatgagc gctcgggttt ctggctgatg atgaaacggc ttgaggccga
     2341 ccgttttgtc tggccacgcc gacagcaggc ggtgatggaa ctcacgaccg aacagcttca
     2401 ctggttactc gaaggcatcg acatcgacgc ggtgcgtcgt cacccttcga ggcagtaccg
     2461 acacgtgagc tgaacgttca gtagcagcgc gccgggcgtg atgcgcgcga cgcccggcgc
     2521 aattgttaca ctttgacgta aacccattcg ttgtgcggct tcgctatcgt ggaggacatg
     2581 aataccgacg cccgccaccc gtcccctgag gacgatctca aacagctctc gcccgacgcg
     2641 ctgatcgcgc gcatcctcga gcttcagtca cagaaccagc aacttgcgca acgcctcggg
     2701 caactcgagg aactgttccg tctggcgcag ctcaagcgct tcgccccgag cagcgagaaa
     2761 ctcaaggatc gcgtgttcga tgaagccgag cagatcgccg cgaccgaacc cgccgacgat
     2821 gatccggatg atgcattcgc actgcccgat acgggactgc cggaggttga taagcccgag
     2881 cgcggcaagc ggggacgcaa gccgctgccg gcggagctgc cgcgccagcg catcgagtac
     2941 gacctgcccg aagagcagaa gatctgcccg tgctgccaga atgcgctgca ccggatgggc
     3001 gaggaaatga gcgagcagtt gcacatcgag gtcaaggcgt cagtattgca acatgtgcgc
     3061 ttcaagtacg cgtgccgcgc ctgcgagcgc aatgctgagc acacgccgat cgtgaccgcg
     3121 ccgatgccga ggcagccgct gccgggcagc accgcaagcg cggcgatgat cgcgacggtg
     3181 acgactggca aatacgtgga tggcacgccg ctgtaccgga tggaacacgc gctggcccgt
     3241 gcgggcattg cggtgggccg cggcacgctg gcgaactgga tcatcaggcc tgccgagctg
     3301 cactacagcc ggctgtacga agcgatgcgc cagacactgt tgtcgcagcc gctgattcac
     3361 ggcgacgaga cgacggtgca ggtgctcaag gaagaaggca agacgccgca aagcacgagt
     3421 tatatgtgga cgtacagaag cgccggggac agcgagcagc cggtggtgct gttcgactac
     3481 cagccggggc gcgggcaaca atacccgcaa gcgtttctcg ctggttacga aggcatgctg
     3541 atgactgacg gatacagtgc ttggcgaacc ctcaaaggtg ccactcactt cggctgtatc
     3601 gcccattcac ggcgcttgtt cgttgaagca cacaagggac agaagaagaa aacgggtggt
     3661 cgcgcgctgc aggcgcttga gtacttcaag gcgctctatc aggtcgagac gcttgctcgg
     3721 gcaaaaccgc ctgatggcga gacgcaagcc cactacacct accggctgcg gcggcaacac
     3781 agcgtgccgt tgctagaagc gttcaaggct tggctggaca cacaggcgct tcaagtgctg
     3841 cctgaaagcc tgttgggcaa ggcgatcagc tacacgagaa accaatggaa atatttaagc
     3901 cgctacgtga tcgatgggcg tgcccccgtg gataacaaca ttctggaaag agatatcagg
     3961 ccatttgcaa ca
//
LOCUS       DATGBK010000201         3832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_118207, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000201 DATGBK010000000
VERSION     DATGBK010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3832
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118207"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..863
                     /locus_tag="VKJ77_02955"
     CDS             <1..863
                     /locus_tag="VKJ77_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC44264.1"
                     /translation="PDYPLWTAAVSLSSGTPVHYLCDESAGWMPDLDDLRSKITPNTK
                     ALVIINPNNPTGALYSDELLKDMIEIARKHGLIIFADEVYDKIVYDGRKHTAVGALSE
                     DVLTVTFNSLSKSYRACGYRAGWMYISGLTGENRRIAHDYMEGLGILASMRLCANVPG
                     QYAIQTALGGYQSINDLIVPGGRLFKQRELAYDMLTAIPGVSCVKPQAALYMFPKLDP
                     KMYPIVDDQQFITDLLLEERTLLVQGTGFNWPTPDHFRVVFLPNVDDLADSINRIARF
                     LDGYRKRHSV"
     gene            890..2206
                     /locus_tag="VKJ77_02960"
     CDS             890..2206
                     /locus_tag="VKJ77_02960"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006482858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HMC44265.1"
                     /translation="MEPIKVGLLGFGTVGSGTFTVLRRNQEEIKRRAGRGIEITRIAV
                     RTPSKVQGAEGIDVTTDFNAVVDDPSIDIVAEMIGGTGVARELVLRAISNGKHVVTAN
                     KALLAVHGSEIFEAASKKGVMVAFEAAVAGGIPIIKALREGLTANRIQYIAGIINGTT
                     NYILSEMRDRGLDFATALKAAQELGYAEADPTFDIEGVDAAHKVTIMSAIAFGVPVQF
                     DRAYVEGISKLDAIDIRYAEALGYRIKLLGIARRTDKGIELRTHPTLIPAKRLLANVE
                     GAMNAVVVHGDAVGTTLYYGKGAGAEPTASAVVADLVDVTRLHTADPEHRVPHLAFQP
                     DRLANTPILPIEEVTSSYYLRLRVADVTGVLANITRILADKVISIDALLQKESEHVDG
                     EDKGETDIILLTHETVEREINAAITQIEALSTVVSKVTKLRMEGLN"
     gene            2216..3661
                     /gene="thrC"
                     /locus_tag="VKJ77_02965"
     CDS             2216..3661
                     /gene="thrC"
                     /locus_tag="VKJ77_02965"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HMC44266.1"
                     /translation="MNYISTRGAGFGERHTFSDILLGGLAKDGGLYLPAEYPRVTAQE
                     LTVWRTLSYADLAYEILRKFSDDIPDEDLRALTRRTYTASTYSNVRHHESASQITPLK
                     TLGEEGGTTVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKQGQTLNILGATSGDTGS
                     AAEYAMRGKQGVRVFMLSPHQKMSAFQTAQMFSLQDPNIFNLAVIGNFDNCQDIVKAV
                     SNDHAFKAANKIGTVNSINWARVMAQVVYYFKGYFAATKSNAERVSFTVPSGNFGNVC
                     AGHIARMMGLPIEQLVVATNENDVLDEFFRTGIYRVRTAAETYHTTSPSMDISKASNF
                     ERFVFDLLGRDPARVLQLFRDVEEKGGFDLAASGDFARVKEFGFVSGRSSHADRVDTI
                     RDAFKRYGTMIDTHTADGLKVAREHLTPGVPMIVLETAQPIKFGETIREALEREPERP
                     AAFIGIEELPQKFDIVAAEAGLVKAYIAERI"
BASE COUNT          783 a         1116 c         1212 g          721 t
ORIGIN      
        1 cgccggacta tccgttgtgg acggctgcgg tgagcttgtc gtcgggtacg ccggtgcatt
       61 atctctgcga cgaatccgcc ggctggatgc ccgatctcga cgacctgcgc tcgaagatca
      121 cgccgaacac gaaggcgctc gtgatcatca acccgaacaa cccaaccggc gcgctgtatt
      181 cggatgagtt gctcaaggac atgatagaga tcgcccgcaa gcatggcctg atcatttttg
      241 ccgacgaggt ctacgacaag attgtctacg acggccgcaa gcatacggcg gtcggagcgt
      301 tgtccgaaga cgtgctgacc gtcacgttca atagtttgtc gaagagttac cgggcctgcg
      361 ggtatcgcgc gggctggatg tacatctccg gcctgacggg tgaaaaccgc cgcattgccc
      421 atgactatat ggaagggctc ggcatcctgg cctccatgcg cctgtgcgcg aacgtgccgg
      481 ggcagtacgc catccagacg gcgctcggcg gttaccagag catcaacgac ctgatcgtgc
      541 cgggcggccg gctgttcaag cagcgggagc tcgcctacga catgctcacc gccattcccg
      601 gcgtgagctg tgtcaagccg caggcggcgc tgtacatgtt cccgaagctc gacccgaaga
      661 tgtatccgat cgtcgatgat cagcagttca ttacggatct gttgctcgaa gaacgcacgc
      721 tgcttgtgca gggcaccggg ttcaactggc cgacgccgga tcattttcgc gtggtgttcc
      781 tgccgaacgt ggacgatctc gccgactcca tcaaccgtat cgcgcgcttt ctcgatggtt
      841 atcgaaaacg tcactctgtc taaacctctc ttataagact tacgctgcaa tggaaccgat
      901 caaagttggc ctgctgggct tcggcaccgt cggcagtggc accttcacgg tgctgcgccg
      961 caatcaggaa gaaatcaaac ggcgcgccgg acggggcatc gaaattacgc gcatcgcggt
     1021 gcgcacgccg tcgaaggtgc agggcgcaga gggcattgac gtcacgaccg acttcaacgc
     1081 cgtggtcgac gatccttcca tcgacatcgt ggccgagatg atcggcggca cgggcgtcgc
     1141 gcgcgaactg gtgctgcgcg ccatttctaa cggcaagcat gtggtgacgg cgaacaaggc
     1201 gctcctcgct gtgcacggca gcgagatttt cgaagcggcg agcaagaagg gcgtgatggt
     1261 ggcgttcgaa gcggcggtcg cgggcggcat tccgatcatc aaggcgctgc gcgaagggct
     1321 gacggccaac cggatccagt acatcgcggg catcatcaac ggtacgacga actacattct
     1381 ctcggagatg cgcgaccgcg ggctcgactt cgcgaccgca ctgaaggcgg cgcaggaact
     1441 gggttatgca gaagccgatc cgaccttcga tattgaaggc gtggacgcgg ctcacaaggt
     1501 cacgatcatg agcgcgatcg cgttcggtgt gcccgtgcaa ttcgaccggg cttacgtgga
     1561 agggatcagc aagctcgacg ccatcgatat ccgctatgcc gaggcgctgg gctatcggat
     1621 caagctgctg ggtatcgcgc ggcgcacgga caagggcatc gagttgcgca cgcatcccac
     1681 gctgattccg gcaaaacgct tgctggcgaa cgtggaaggc gcgatgaacg ccgtggttgt
     1741 gcacggcgac gcagtcggca ccacgcttta ttacggcaag ggtgcgggcg ctgagccgac
     1801 tgcgtcggcg gtggtggcag accttgtgga cgtcacgcgc ctgcatacgg ccgacccgga
     1861 acatcgcgtg ccgcacctag cgttccagcc ggacaggctc gccaacacgc cgatcctgcc
     1921 gatcgaggaa gtgacgagca gctactacct gcgcctgcgc gtggcggatg ttaccggcgt
     1981 gctggccaat atcacgcgga ttctcgcgga caaggtcatt tccatcgacg cgttgctgca
     2041 gaaggaatcc gagcatgtcg acggcgagga caagggtgaa accgacatca tcctgctgac
     2101 gcacgaaacg gtcgaacggg aaatcaacgc ggcgatcacg cagatcgagg cgctgtccac
     2161 cgtggtttcg aaagtgacga agctgcgcat ggaaggattg aactagggct atgaaatgaa
     2221 ctacatctcc acgcgcggcg ccggttttgg cgagcgccat actttctccg acatccttct
     2281 cggcggtctc gccaaggacg gcggcctgta tttgcccgct gaatatccgc gcgtcacggc
     2341 gcaggaactg actgtgtggc gtacgctttc gtatgcggat ctggcctacg aaatcctgcg
     2401 caaattcagc gacgacattc ccgacgaaga tctgcgcgcg ctcacgcgcc ggacttacac
     2461 ggccagcacg tacagcaacg tccgccatca cgagagcgct tcgcagatta cgccgctgaa
     2521 aacgctgggc gaagagggcg gcacgacggt gtcattgctg gagttgtcga acggtcccac
     2581 gctcgcgttc aaggacatgg ccatgcagtt gctcggcaac ctgttcgagt acacgctggc
     2641 caaacagggg cagacgctga acattcttgg cgccacctcg ggcgacaccg gcagcgcggc
     2701 ggagtacgcg atgcgcggca agcagggcgt gcgcgttttc atgctgtcgc cgcatcagaa
     2761 gatgagcgcg ttccagacgg cgcagatgtt ttcgctgcag gacccgaaca tctttaacct
     2821 ggcggtgatc ggcaacttcg acaattgcca ggacatcgtc aaggcggtgt cgaacgatca
     2881 cgcattcaaa gcggccaata agatcggcac ggtcaattcg atcaactggg cgcgcgtgat
     2941 ggcgcaggtt gtctattatt tcaaaggcta cttcgctgcg acgaagtcga acgcagagcg
     3001 agtgtcgttc acggtgccat cgggcaattt cggcaatgtc tgcgccgggc atatcgcgcg
     3061 gatgatgggt ttgccgatcg agcaactggt cgtcgctacg aacgagaacg acgtgctcga
     3121 cgaatttttc cgcaccggga tctatcgcgt gcgcacagcg gccgagacgt accacacgac
     3181 cagcccgagc atggatatct cgaaggcgtc gaatttcgag cgtttcgtat tcgatctgct
     3241 cggccgcgat cccgcgcgcg tgctgcagtt gttccgcgat gtggaagaaa agggtggatt
     3301 tgacctcgcg gccagcggcg attttgcgcg cgtgaaggaa tttggtttcg tgtcgggacg
     3361 cagcagccat gcggaccggg tggataccat ccgcgacgcg ttcaagcgtt acggcaccat
     3421 gatcgatacc cacacggccg acggtctgaa ggttgcgcgc gagcatttga cgcctggcgt
     3481 gccgatgatc gtgctggaaa ccgcccagcc gatcaaattc ggcgaaacca tccgagaagc
     3541 gcttgagcgc gaaccggagc ggccggcggc gtttatcggt atcgaagaat tgccacagaa
     3601 attcgatatc gtggcggccg aggcgggtct cgtgaaggcg tatatcgcgg agcgcatcta
     3661 ggctcgagac gggcggcagc gggcggtccg gagcgtcgcg caagatgtta ctcgacgtgt
     3721 cgaaccggta cccgtgcgtg cggttttccg ctgcaatgcc gcaattcgtc ccaaaaactg
     3781 ctaaaattgc gggtttttcg ccgtacacca ttcaaaagga cgcgctgtgc tg
//
LOCUS       DATGBK010000202         1919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_279928, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000202 DATGBK010000000
VERSION     DATGBK010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279928"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1205)
                     /locus_tag="VKJ77_02970"
     CDS             complement(<1..1205)
                     /locus_tag="VKJ77_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44267.1"
                     /translation="MNVNAGARLDRLPVSGFHKRIMWLIGIGMFFDGFDIYVASTVLG
                     ATLQSGFSTLGQNALFVSLTFLGMMLGSLATGFLGDRFGRRFTYQTNLMIFGIASLGA
                     AMAPNMLVLIAFRFVMGLGLGAENVVGYSTLTEFAPPASRGKMQGLMAVFVVSGLPVA
                     GLIGLVLIPAMGWRAMFVLGGIGALGVWYARKSLPESPRWLESVGRHQDAEAILSKIE
                     REVKAEHGDSLPAPSPKPSVAPSRALGSLFTGAMLPRMIVGCVTLVVINTLLYGFVTW
                     LPTFFVHQGFSIAKSFGYALVMSLGAPIGSGIGALTADRWGRKPTIIGASILAIIFGA
                     IYPFVSNPIVLPAVGLLLVIPIYVLVALLFAIYVPELFPTEVRLRASGICNTLGRGAT
                     IVTPFIVVAL"
     gene            complement(1253..1918)
                     /locus_tag="VKJ77_02975"
     CDS             complement(1253..1918)
                     /locus_tag="VKJ77_02975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HMC44268.1"
                     /translation="MNNADAGNEVTGPMFDAMIASLSSEATVPAARVLRIRARGEVFC
                     TGRERAGTDAVSIHREVSRLIELKRLLRASSMITIAEVQGNAFGFGFGLAILCDFTLV
                     SSSAKLAFPEMRKGLPPAAIMAYLGRYTLPKQVFPMVLFGDAITPEAALNAGLVTRVC
                     APDTLQAEADALADRILALDDTGARQCKSFFQATEESSLEHNFRCATETLTVSALRLM
                     ALK"
BASE COUNT          442 a          605 c          560 g          312 t
ORIGIN      
        1 agcgccacca caatgaacgg cgtgacgatc gtcgcccctc gaccgagggt gttgcagatg
       61 cccgatgcac gcaggcgtac ttcagtcgga aacagctcgg gcacgtagat cgcgaacagc
      121 aacgcgacca gcacataaat agggatcacc agcagcaagc cgacggccgg caacacgatc
      181 gggttgctca caaacggata gatcgcaccg aagataatgg cgaggatcga cgcgccgatg
      241 atggtcggct tgcggcccca cctgtcggca gtcagcgcac cgatgcccga gccaataggc
      301 gcaccgagcg acatcacgag cgcgtagccg aacgacttcg caatgctgaa tccttgatgg
      361 acgaaaaacg tcggcagcca ggtcacgaag ccgtataaca aggtattgat caccaccagc
      421 gtcacgcagc caacaatcat gcgcggcagc attgcgcccg taaaaagcga gcccagcgca
      481 cgcgatggcg caaccgaagg cttgggcgat ggcgcgggca acgagtcacc gtgttcggcc
      541 tttacctccc tctcgatctt cgaaagaatc gcttcggcat cctgatgacg acctaccgac
      601 tcgagccagc gcggcgactc cggcaacgac tttcgcgcat accagacgcc aagtgcgcca
      661 attccaccaa gtacgaacat ggctcgccag cccatcgcgg gaatcagcac gagtccgatc
      721 agtcccgcta cgggcaatcc cgagacgacg aacacggcca tcaatccctg catcttgccg
      781 cgtgacgcag gcggcgcgaa ctcggtgagc gtggaatatc caacgacgtt ttccgcgcca
      841 agcccgagtc ccatcacaaa ccggaacgcg atcaggacca gcatgttcgg cgccatcgcg
      901 gcgcccagcg acgcaatgcc gaagatcatg agattggtct ggtaggtaaa acgacggccg
      961 aatcgatcac caaggaaacc tgtggccagc gagccgagca tcatcccgag gaatgtcagc
     1021 gatacgaaca gcgcattctg gccgagcgtc gaaaagccgc tttgcaacgt ggcgccgagg
     1081 accgtggagg ctacgtagat atcgaagcca tcgaagaaca tgccgatccc gatcagccac
     1141 atgatgcgct tgtggaagcc cgataccggc aaccggtcca gacgtgcgcc tgcattcaca
     1201 ttcatttgcg tctcctgcaa accttcgtgg gtttgtcgta atacatgagc gactacttca
     1261 gcgccatcag tcgcaacgct gagaccgtca gcgtttccgt cgcgcatcgg aagttatgct
     1321 cgagcgaact ttcctcggtc gcctggaaga aggacttgca ctggcgcgcg ccggtatcgt
     1381 cgagtgcgag gattcgatcc gcgagtgcat cggcttcggc ttgcagcgta tcgggcgcac
     1441 aaacacgggt cacgagaccg gcgttcaatg ccgcctcggg cgtgattgca tcgccgaaaa
     1501 gaaccatcgg gaacacctgc ttcggcaagg tgtatcggcc aagataggcc atgatcgcgg
     1561 cgggcggcag ccccttgcgc atctcgggaa aggcaagctt cgcactgctc gataccagcg
     1621 tgaagtcgca caggatcgcg agaccgaagc cgaagccgaa cgcgttgccc tgcacttcgg
     1681 caatcgtgat catcgaggat gcacgcagca accgcttgag ctcgatcagc cgcgatactt
     1741 cacgatgaat ggataccgcg tccgtgccgg cgcgctcgcg ccctgtgcag aacacttcgc
     1801 cgcgtgcgcg gatgcgcagc acgcgcgccg cgggcacagt cgcttcgctg ctcaacgaag
     1861 cgatcatggc gtcgaacatc ggcccggtga cttcattacc ggcgtcggca ttgttcagg
//
LOCUS       DATGBK010000203         2297 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_256899, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000203 DATGBK010000000
VERSION     DATGBK010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2297
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256899"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(24..278)
                     /locus_tag="VKJ77_02980"
     CDS             complement(24..278)
                     /locus_tag="VKJ77_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44269.1"
                     /translation="MSRFLLTAVSLLGILLNSTAFAATRDEQTAACKGDAIRYCAAEI
                     PNEQKVTVCMKAHLQQLSPECKAMFKQPATSKHKKVLKPA"
     gene            444..950
                     /locus_tag="VKJ77_02985"
     CDS             444..950
                     /locus_tag="VKJ77_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HMC44270.1"
                     /translation="MASSNAHHATGWAAGLIAAALVSKAGAAGPYHVWGILSFCAGVF
                     GGTAPDWLEVAWWTRARRLWITHRTLTHWGVGWVALLAVSYHFLGVHPWAAVSFGFAC
                     GGLMHLFADWPNPLGVPWLASRHSLNWWNSGRCDALIVGAAWIAAALAVDHVWFHSVY
                     GLRLLHAL"
     gene            1278..1967
                     /gene="hisQ"
                     /locus_tag="VKJ77_02990"
     CDS             1278..1967
                     /gene="hisQ"
                     /locus_tag="VKJ77_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004522525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0003333 - amino acid transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter permease HisQ"
                     /protein_id="HMC44271.1"
                     /translation="MFLYGYGPLLLAGAKQTIALAVLSLAVSILLGLAGASAKLSRNR
                     VTRGIATAYTTLIRAVPDLVLMLLLFYSIQIAVNNLTDAFGLEQFDIDPFTAGVLTLG
                     FIYGAYFTETFRGAFLAVPRGQLEAGSAYGMSGVRVFVRILFPQMMRFALPGIGNNWQ
                     VMIKATALVSIIGLADIVKAAQDAGKSTYKMFFFILVAAAAYLAITTVSNIVLLYLER
                     RYSTGVRHADL"
     gene            2003..>2297
                     /locus_tag="VKJ77_02995"
     CDS             2003..>2297
                     /locus_tag="VKJ77_02995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017424506.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC44272.1"
                     /translation="MIQILADYWRPFLYSDGMRASGLVVTLWLLASALALGFVAAVPL
                     ACARVSKNRWLSTPVRLYTYVFRGTPLYVQLLLLYTGMYSLEFVRSQSLLEAFF"
BASE COUNT          384 a          713 c          663 g          537 t
ORIGIN      
        1 gtcagcatgt gattgctcct tgttcacgcg ggcttgagca ccttcttgtg tttgctcgtc
       61 gccggttgct tgaacatcgc cttgcattca ggactaagtt gctgcagatg cgccttcatg
      121 cagacggtga ctttttgctc atttggaatc tccgctgcgc agtagcgaat tgcgtcgcct
      181 ttgcaggccg cagtctgctc atcgcgggtc gcagcaaacg ccgtactgtt cagcagaatt
      241 cctagtaaag aaacagcggt aaggagaaaa cgggacatgg gcgtggtaga aggtggcgat
      301 atcgtcatac agcaaatcgc gcgcccgccc ctttgcgtgg cgacgggaac gcgccggctc
      361 cgtcccggac attgcgcaca atacgcaact cttgtgtcaa catgcgcgac ttcatttcat
      421 tcgctacacg cggcatctat ttcatggctt cgagcaacgc gcatcacgcg accgggtggg
      481 cagcaggttt gatcgctgct gcgctcgtca gcaaagccgg cgcagccggt ccgtatcacg
      541 tctggggcat actgagtttt tgtgcgggcg tgttcggcgg caccgcgccg gactggctcg
      601 aagtggcgtg gtggacgcgg gcgcgaaggt tatggatcac gcatcgcacg cttacgcatt
      661 ggggtgtcgg ctgggttgca ctgctcgccg tttcctacca ttttctaggc gtccacccgt
      721 gggctgccgt cagtttcggc ttcgcatgcg gcggcttgat gcatctcttc gccgattggc
      781 ccaacccgct cggcgtaccc tggctcgcgt cgcgacactc cctgaactgg tggaacagcg
      841 gtcgatgcga tgcgttgatc gtcggcgcgg catggatcgc ggcggccttg gctgtagacc
      901 acgtctggtt ccacagcgtg tacggcctca ggctgcttca cgcgctctga aagagggcgt
      961 acctgtctcc gaacgccttg attttccggc ccctttgttt ctatcggaaa agcgacgcaa
     1021 aacctgtgga ttccgctcgc tagccgacgt caggcgtccg cttgttctaa agccgctaag
     1081 cacctgaaag cccctgcccc gtggttgatt gctcgcgatc cgcatccatc ggatcatttg
     1141 ctgcagtgca ataaacaacc cttgccgcgt ttgagcaatt aattttcgct ggtgactatc
     1201 ggcgccagtc gttcggggaa caccgccgtc ataaggcgcg tacccacgcg atcccttcaa
     1261 cagacggaga cacgcacttg ttcctatacg gctatggtcc actgctgctg gcgggcgcga
     1321 aacagacgat tgcactcgcg gtcctgtctc tcgcggtatc catcctgctc gggcttgccg
     1381 gtgcaagcgc caagctatcg cgcaaccgcg tcacgcgcgg catcgccacc gcctacacca
     1441 ccctgattcg tgcggtgccc gacctggtcc tgatgctgct gcttttctac agcatccaga
     1501 tcgcggtcaa caatctgacc gatgcgttcg gcctggagca attcgacatc gatcccttca
     1561 cggccggcgt gcttacgctc ggcttcatct acggcgctta cttcaccgaa acttttcgcg
     1621 gcgcgtttct cgcggtgccg cgcggccagc tggaagccgg cagcgcctat ggcatgagcg
     1681 gcgtgcgcgt gtttgtgcgc atcctgtttc cgcagatgat gcgcttcgcg ctgccgggga
     1741 tcggcaacaa ctggcaagtg atgatcaagg cgacggcgct ggtgtcgatc atcggtctcg
     1801 ccgatatcgt caaggccgcg caagacgccg gcaaaagcac ctacaagatg tttttcttca
     1861 tcctggtcgc ggccgctgct tatctcgcca tcacgactgt ctcgaacatc gttttgctgt
     1921 atctcgagcg ccgctattcc acgggcgtgc ggcacgccga cctctaagcg acctccgagc
     1981 aaaaaaggga aaagcgacca tcatgatcca gatacttgcc gattactggc gcccgtttct
     2041 ttactccgat ggcatgcgcg cctcgggtct tgtcgtgacc ttgtggctgt tggcgagcgc
     2101 gcttgcgctt ggttttgtcg cggcggttcc gcttgcctgt gcccgcgtgt cgaagaaccg
     2161 ctggctctca acaccggtgc gcctctacac ttacgtgttt cgcggcacgc cgctctacgt
     2221 gcagttgctg ctgctctaca ccggcatgta cagtctcgag ttcgtgcgct cgcagtcgct
     2281 gctcgaggcc ttctttc
//
LOCUS       DATGBK010000204         2378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_233853, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000204 DATGBK010000000
VERSION     DATGBK010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2378
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233853"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..685)
                     /locus_tag="VKJ77_03000"
     CDS             complement(<1..685)
                     /locus_tag="VKJ77_03000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013210742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC44273.1"
                     /translation="MEIKGKVVLVTGANRGLGEQFAKALLAAGASKVYASARDKSQVK
                     VAGVEAVQLDVTNTQSIAAAADRLTDVQVVINNAGAIIGGSLLDGASIDAVRSQVETN
                     VIGPLAVTQAFAPILKRNGGGAVVNILSVLSWLTIDNTGSYSASKSAAWAITNGLRTE
                     LRGQNTLVVGVHPAFIDTDMTAGIDAPKTSPEDVVRQVLEGIEQGKEEILVDEVGRNV
                     KASLSSATPA"
     gene            complement(755..1186)
                     /locus_tag="VKJ77_03005"
     CDS             complement(755..1186)
                     /locus_tag="VKJ77_03005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC44274.1"
                     /translation="MTTQDLSYLDCNCFAIRQAARFVSQLYERHVSQAGVTAAQFTLL
                     AAIHRRPGVTMAELADAMVMERTTLVRALKPLQRDRLVTAAQQDASTRAVALSLSDAG
                     KKTLGEASLRWREAQQEFEDKFGRERAGELRKSLLELTAAQ"
     gene            complement(1258..2313)
                     /locus_tag="VKJ77_03010"
     CDS             complement(1258..2313)
                     /locus_tag="VKJ77_03010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44275.1"
                     /translation="MSELRVTSLTKSFDGQPVLHGVDLSVERGTLLALLGPSGSGKTT
                     LLRVLCGFERADAGTVEIDGVRVAGPGIHVPSEARRIGYVPQEGALFPHLSVADNIVF
                     GLPRQQRRARYRVDELLALVGLPAAYGDRAPQALSGGQQQRVALARALAPSPSLVMLD
                     EPFSSLDAALRIETREAVANALAATGATAVLVTHDQAEALSRGHEVAVLWRGRLVQTD
                     SPEAVYRRPVSRELASFVGDAVIVPGLIDSGNSKQVICEFGTLPIARTVVASDVDVMI
                     RPEQIRIVSDHRAEGDGVQAIVEKVVFYGHDASVMLRSLTGERGVQIRVAGHSHPRVG
                     ERIALSVEGDVVAYPKG"
BASE COUNT          467 a          810 c          671 g          430 t
ORIGIN      
        1 aagcaggcgt tgccgacgat aacgacgcct tcacgttgcg gccgacttca tcgacgagga
       61 tctcttcctt gccttgctcg ataccttcga gcacctgccg cacgacgtct tccggcgatg
      121 tcttcggagc gtcgattccc gcagtcatat cggtatcgat aaacgccgga tgcacaccca
      181 ccaccagcgt gttctgccca cgcagttcgg tgcgcaagcc attcgtgatc gcccacgcgg
      241 cggacttcga cgcgctgtac gaacccgtgt tgtcgatggt cagccagctc agcaccgaca
      301 ggatgttgac caccgcgcca ccaccgttgc gcttcaggat cggcgcaaaa gcctgggtga
      361 cagcaagcgg accgatcacg ttggtctcga cctgcgagcg cacggcatcg atcgatgcgc
      421 catcgagcaa cgaaccgccg atgatcgcgc cggcattgtt gatgacgacc tgcacgtcag
      481 tcagacggtc agccgcagcg gcaatgctct gcgtattcgt gacgtcgagc tgcacggctt
      541 ccacgccggc cactttgacc tgacttttat cgcgcgccga tgcatacacc ttcgatgccc
      601 ccgccgcgag caacgctttc gcaaactgct cgccaaggcc acgattcgcg ccggttacca
      661 agacaacttt tcctttgatt tccatgctaa tctccatagt gcatatgcac tttttgaggt
      721 aaaaaaacgc ccggcgccaa gccgagcaag tatttcattg cgccgctgtc agttcgagca
      781 gtgactttct cagttccccg gcgcgttccc ggccgaactt gtcctcaaat tcctgctgtg
      841 cctcgcgcca gcgcagcgat gcttcgccga gtgtcttttt gccggcgtcg gacagcgaca
      901 acgcaacagc ccgcgtgctg gcgtcttgct gggcggccgt gaccaggcgg tcgcgctgca
      961 acggcttcag cgcccggacc agcgtggtgc gctccatcac catggcgtcc gcgagttcgg
     1021 ccatggtcac gcccggacgc cggtggattg ccgcgagcaa cgtgaactgc gccgctgtca
     1081 cgcctgcctg gctgacgtgg cgctcataaa gctgtgacac aaaccgcgcc gcctgacgga
     1141 tggcgaagca attgcagtcg aggtaggaca gatcttgggt agtcatgctc gcgattgtat
     1201 ttgtgtatat gcactttgtc aagatggcga ccggcctgct ctgaagcatg ccctcaatta
     1261 ccccttggga tacgccacga catcgccttc aaccgatagc gcgatgcgct cgccgacacg
     1321 cggatgcgaa tgccccgcca cgcgaatctg cacaccgcgc tcgcctgtga gggagcgcag
     1381 catgacgctg gcatcgtgac catagaacac gactttctcg actatcgcct gaacgccatc
     1441 accttccgca cgatgatcgg aaacaatccg gatctgctcc ggccggatca tcacatcgac
     1501 atcgctggcg accacagtgc gtgcgatcgg caaggtgccg aactcgcata tcacctgctt
     1561 cgaattcccg gaatcgatca accccggcac gatcaccgcg tctccgacaa aactcgccag
     1621 ctcacgcgac accggccgcc gataaaccgc ctccggcgaa tccgtctgca caagacggcc
     1681 acgccacaac accgccacct cgtgcccgcg cgacaacgcc tcggcctgat cgtgcgtcac
     1741 cagcaccgca gttgcgcccg ttgccgcgag cgcgttcgcc acggcctcac gcgtttcgat
     1801 ccgcaacgcg gcatcgaggg aagaaaacgg ttcgtcgagc atcacgagcg agggcgacgg
     1861 cgcaagcgct cgcgccagcg cgacacgttg ctgctgccca ccggacaatg cctgcggcgc
     1921 gcggtcgcca taggccgccg gcagaccaac gagcgccagc aattcatcca cgcgataccg
     1981 cgcccgccgc tgctgccgcg gcaagccgaa gacgatgtta tcggcgaccg aaagatgggg
     2041 aaaaagcgcg ccttcctgag gaacatagcc tatccgccgc gcttctgacg gcacgtgaat
     2101 gcccggtccg gccacgcgca cgccatcgat ctcgacggtg ccggcgtcgg cccgttcgaa
     2161 gccgcacagc acgcgcaaga gcgtggtctt gccgctgccg gacggtccga gcaaggcaag
     2221 caaggtgccg cgttccaccg ataaatcgac gccatgaagc acgggttgac catcgaagga
     2281 cttggtgagg ctggtaacgc gaagttcgct catatcgatt tacttgtcag gcggcgaacc
     2341 ggcctgtagt cctgctttta aatcggccgc acgccccg
//
LOCUS       DATGBK010000205         3292 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_302992, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000205 DATGBK010000000
VERSION     DATGBK010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3292
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302992"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..957
                     /locus_tag="VKJ77_03015"
     CDS             <1..957
                     /locus_tag="VKJ77_03015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC44276.1"
                     /translation="FVHVALRRAVVAPLEEAGRHFERIAEGKLDEPIADRGTNEIGRL
                     FAGLASMQASVAHTVKTVRESSDSINLGADEIATGNADLSARTENQAASLEETASSME
                     ELTATVRQNAEHARDANSLAGDALTATSRGTGVVDQVVEKMTSIARSSDKIAEIISVI
                     DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSAQSAKEIKELIGESVS
                     QVNDGSALAERAGQAMREVSTSISRLTQMMAEISASSLEQSTGIEQVNQAVVQMDEMT
                     QQNAALVEQAASAAASLHEQTRHLKAAVSVFKIPDEGRVTRY"
     gene            complement(1173..1559)
                     /locus_tag="VKJ77_03020"
     CDS             complement(1173..1559)
                     /locus_tag="VKJ77_03020"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HMC44277.1"
                     /translation="MNGSGLSDVEFPVQKQLEAYNARDIEDFMQWWAYDCEYYEFPSR
                     LLASGTSEIRERHVARFSESNLYGKLVKRISVGNMVVDQEVVTRTFPEGPGEIDVIAI
                     YEVENGKIAKAWFKMGTPRLHAAETR"
     gene            complement(1813..2484)
                     /locus_tag="VKJ77_03025"
     CDS             complement(1813..2484)
                     /locus_tag="VKJ77_03025"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HMC44278.1"
                     /translation="MSSTSEHGREKHNAAFKAAQVSVLLNAALMTMQIVIGWLACSDG
                     LLADGVHTLADLAADGMVLAVLRLSATAAHRSVNDQYDRYETIGSLLISFLLIATGME
                     TLWSSLGHAANAATTSSVHASALVVAVFVIVAKEALFRYIMSVAKRTRSTILVASAWH
                     ARSDAISALIAVVGILGSMAGLAISDRLAAAVIGIMIARMGFNLGWKAFKDSFDRPAS
                     ETAGR"
     gene            complement(2866..2950)
                     /locus_tag="VKJ77_03030"
     tRNA            complement(2866..2950)
                     /locus_tag="VKJ77_03030"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2914..2916),aa:Leu,seq:cag)
BASE COUNT          707 a          929 c         1035 g          621 t
ORIGIN      
        1 ttcgtacacg tcgcgttgcg ccgcgccgtg gtcgccccgc tcgaggaagc cggccgtcac
       61 ttcgagcgga ttgccgaggg caagctcgac gagcctattg ctgatcgcgg caccaacgaa
      121 attggccgct tgttcgccgg gcttgcgtca atgcaggcaa gcgtcgcgca cacggtgaag
      181 acggtgcgcg agtcgtcgga ctcgatcaat cttggcgccg atgaaatcgc caccggcaac
      241 gcggatctgt cggcacgcac ggagaaccag gccgcatcgc tggaggagac tgcatcgagc
      301 atggaggagc tgaccgcgac ggtgcgccag aacgccgagc atgcccgcga tgcgaacagc
      361 cttgccggcg acgcactgac tgcgacatca cgaggcacag gcgtggtcga tcaggtggtc
      421 gagaagatga ccagcatcgc ccgaagctcg gacaagatcg cggagatcat ctcggtgatc
      481 gacggcattg cgttccagac caacattctt gcgttgaatg cggccgtcga ggcggcgcgt
      541 gcgggtgagc aaggtcgcgg gttcgcggtc gtggccagcg aagtgcgcgg gcttgcacaa
      601 cgcagcgcgc aatcggccaa ggagatcaag gaactgatcg gcgaatcggt ctcgcaggtg
      661 aacgatggat cggcactcgc ggaacgcgcc ggtcaggcaa tgcgcgaggt atcgacgtca
      721 atctcgcgcc tcacgcagat gatggccgag atcagcgcat cgtcgctcga gcaaagcacc
      781 ggcattgagc aggtcaatca ggctgtcgtg cagatggatg aaatgacgca acagaacgcg
      841 gcgctggtgg agcaggcggc gtcggcggcc gcgtcgctgc atgagcagac gcgtcacctg
      901 aaggccgcgg tatccgtatt caagattccg gacgagggac gggtaacgcg gtactgagga
      961 ctgaagccgg tacaagggta atggcaaggg cgcttgaact tctggcgccc tcgcggggtt
     1021 taaagcggtg gtcggtttag attgacccaa agctgtaccg atggtcgtcg ccactggaac
     1081 ttggcgtagt cgcacggcct ttgccggctc acacggcgaa gttcgctagg gattcccgca
     1141 agcagaacag aagacgctga cagcctagac gctcatcgcg tctcagccgc gtgcagtctc
     1201 ggcgtgccca tcttgaacca ggccttagct attttcccat tctcgacttc gtaaatagcg
     1261 atgacatcga tctcaccggg accctccgga aaggtgcgag tgacgacctc ctggtcgacc
     1321 accatgttgc caaccgatat ccgcttaacg agcttgccgt aaagattgga ttcgctgaac
     1381 cgggcgacgt gccgttcgcg tatctcgctc gtgccgctag ccagcaaacg cgatgggaac
     1441 tcatagtact cacagtcgta agcccaccac tgcatgaagt cttctatatc ccgggcgtta
     1501 taagcctcga gttgtttttg cactgggaat tcgacgtcgc tcaacccgct tccgttcatt
     1561 ttgtggtgtt ccttgtgcgt agtagatgac cgcgactacg cgcttcatag tgagcgtgcg
     1621 ccggatgtca gtgtcaagta ttgtagcgat gcatcgcagc ggtcaatagc atgcagcaat
     1681 gctcgacatt ggacacactg acatgatagc gacgagcatg aagtgggcca tgcttagtag
     1741 cctgtacgcg ccatcggaaa gcaggtgtcg acccttcttc tacgagtaaa gagaagagag
     1801 tgatgagcga atctatcgcc cggcggtctc gctggcgggg cgatcgaacg agtctttgaa
     1861 ggctttccag ccgaggttga agcccatgcg ggcaatcatg atgccgatga ccgcggccgc
     1921 caggcgatcc gatatcgcca gtccggccat gctgcccaga ataccaacca ccgctatcag
     1981 cgccgagatt gcgtcggagc gcgcatgcca ggcgctcgca actagaatgg tggaacgggt
     2041 gcgtttagcg acggacatga tgtaccgaaa cagcgcttcc ttggcgacga tcacaaacac
     2101 cgcgacgacc agcgcgctcg cgtgaacgct ggaagtagtg gccgcattgg ccgcgtgccc
     2161 gaggctgctc catagtgttt ccattcccgt cgcgatcaag aggaaggaaa tcagtagtga
     2221 tcctatggtt tcgtagcgat cgtattgatc gttgacgctc cggtgcgctg cggtagcgct
     2281 taggcgcaag accgccagca ccattccgtc cgctgccagg tcagcaagcg tatgaacgcc
     2341 gtcggccagc aaaccgtccg agcaggcgag ccagccgatc acaatctgca tcgtcatcaa
     2401 ggctgcgttt aacagtacgc tcacctgggc cgccttgaag gcggcattgt gcttctcgcg
     2461 gccgtgctcg gacgtcgacg acatcgtgga ggagaattat tagtgtgggt acagcaccgt
     2521 aaccgcccta cgtggcgaag atatgacact gggcgagctc gcgtggacgg gccttgtcga
     2581 tgggctgtcg gcggggctgc tgcggaacag atcgggattg ccgggcaacg cgcggctgtg
     2641 ccgcgaatgg gtgagccact ttcgcggaag gatcgaatca tcgagccgac ggagggccgg
     2701 aggagggtgc ctaagcaaag ttcgccggga gggcgtgccg tccgatgacc gcttcttagt
     2761 aggcgcattt aggcgcgcgc ggtcgttgaa aaacaaaaaa ccccgcaggc tcaaggcgtt
     2821 acggggtttt cttttactac gctgactgtc ttactgacta cttgttggtg cccaagagag
     2881 gactcgaacc tccacacctt gcggcgcatg gacctgaacc atgtgcgtct accaattccg
     2941 ccacctgggc caaccgatac agcgaaggtt gctattttag cggacgattc gaagctgtca
     3001 atggccgcgt aagaaatgga tcaaaaggag aggcaaaaca gcagtggcga gaagcggttg
     3061 cgaagagggc gcgacaatcg attgtagtgt gcctcgaccc cgacctgggc gcgagtggcg
     3121 tgtatcgagt agtgggtatc gagtagcgaa gattgacccc tccactgagc gctcgattca
     3181 acattcggcg aaaccggtcc actcagcgac gatcacgatg cgcgatagtg atgccgcatg
     3241 aaaaaccgat cgagttcacg ctcctccggc cgtcggcccg taaagacctc ga
//
LOCUS       DATGBK010000206         6397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_233863, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000206 DATGBK010000000
VERSION     DATGBK010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6397
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233863"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VKJ77_03035"
     CDS             <1..232
                     /locus_tag="VKJ77_03035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44279.1"
                     /translation="QLVVFASSGHVEHGQAPRPGAFYNIDRRSDISAGSNGETPGAGK
                     KSGQNPVDRPFKRTNYFTQTPRKPTHEDGKNA"
     gene            210..1100
                     /locus_tag="VKJ77_03040"
     CDS             210..1100
                     /locus_tag="VKJ77_03040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HMC44280.1"
                     /translation="MRMAKTPDAARKLRALSGGVLLAAAFALSGCASGPTAKPGDPLE
                     PMNREIFKFNDAADKYVARPIATGYVKVTPAPLRTAISSFFSNIGDIGNFANNLLQLK
                     ITDATEDFMRIAINSTLGIGGLFDWASAAGLPKHDQDFGLTLGHYGVPSGPYLVLPLL
                     GPSSARDATNWIASIPLNPGTYLSTEADVSLFVMRFVSARADLLGATDILSQAALDKY
                     AFVRDAYTQRRQYLLTGAANAKLPDYGDDSGATAAPADGASATTAPAKPGMGGSSSSQ
                     GLPNYADPGAAAPASAPAGK"
     gene            complement(1280..1897)
                     /gene="leuD"
                     /locus_tag="VKJ77_03045"
     CDS             complement(1280..1897)
                     /gene="leuD"
                     /locus_tag="VKJ77_03045"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HMC44281.1"
                     /translation="MTNVTVIEGSAVPLPIENLDTDQIMPKQFLRIIDKAGLSKGLLY
                     DLRFDEHGEPLADCVLNQPAYNGARVLIGGANFGCGSSREHAVWGLQQYGFDAVIAPS
                     FAEIFYSNAMNNRLLLVQLEREAVDGLLRESTDDPASKILIDLEAQTVRSTTSAQIFK
                     FPLGARHKRMVIEGMDTIDLTLTALADIEAFEKRHFERHPWAAVM"
     gene            complement(1890..3311)
                     /gene="leuC"
                     /locus_tag="VKJ77_03050"
     CDS             complement(1890..3311)
                     /gene="leuC"
                     /locus_tag="VKJ77_03050"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HMC44282.1"
                     /translation="MSNHNTFYKKLVDSHTVTRIDDQNVLLYVDLHLMNEYTSPQAFS
                     GLAEKHRTVRRPKQQLAVVSHIIPTHAESPRVIRDAASLLQAENLARNCDKAGIRLFA
                     ANDPLQGIEHIIAPELGLIRPGMAVLCGDSHTTTYGALGALGFGIGTSEVEHVLATQT
                     LAYRVAKTMRITIDGALPYGTASKDVIIWIISQIGAQGARGYAVEFRGSTIASLSAEA
                     RMTLCNMTVEAGARAALIAPDKTTFDYVRAHATSLDEAAWQAALSDWSDLKSDADATF
                     DAEYTFDARDIAPFVTWGTSPDQAMRVDALVPDAAQQATPEAAAALRRALDYIGLESN
                     QPIAGTPIDRVFIGSCTNGRIEDLRIVASIVRGRKVAAGVRAMVVPGSGSVRRQAEAE
                     GIAEILETAGFEWREPGCSMCLAMNDDFLEAGERCASTTNRNFEGRQGRGGRTHLMSP
                     AMAAAAALTGKITDVRSLENHHD"
     gene            complement(3317..4195)
                     /locus_tag="VKJ77_03055"
     CDS             complement(3317..4195)
                     /locus_tag="VKJ77_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC44283.1"
                     /translation="MFDDFKDVSATVDGVRIKAIQGGNGPALLLLHGHPQTHAIWHKV
                     VPELTKHFTVVAADLRGYGDSGKPEGLPDHSNYSKRRMAQDQVDLMRALGYESFAVLA
                     HDRGGRVAARMALDHPAVVKKLITLDVAPTLAMYEKTSFEFARAYWHWFFLVRPAPFP
                     ETLIRADADLYLKQTIGARSAGLKPFTPEAYAEYLRCLKQPETAHGICEDYRASITID
                     LEHDRESLAKGQKITCDFLALWGAEGVIEKCFDPIAEWKHLSNNVSGHSLPCGHYIPE
                     EAPELLLERVLPFLQG"
     gene            4290..5201
                     /locus_tag="VKJ77_03060"
     CDS             4290..5201
                     /locus_tag="VKJ77_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007578964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44284.1"
                     /translation="MDGFSDLNLFTLVARHRNLAAAARDLGVTPPSISKRLAQLERRL
                     GVRLLNRTTRRVSLTPEGELYLANGSRILDELAELEQLVTKSRAEPTGLLRVNASFGF
                     GRSRISPAVSKFIERYPAIKIQLHLSDRPVNLQEEGFDLGVRFGDVPDARINARLLLR
                     NRRIVCASPGYVEKHGLPATPHDLTRHACLVLRENESAYGAWHFTRGKKVETVKVDGP
                     LSSNDGTAVLQWALDGRGIAVRSQWETEALVRDGKLVVLLNEWALPNADIHAIYLERH
                     QLSAKLRTFVEFLGEELRAGAGQTGAA"
     gene            complement(5562..5816)
                     /locus_tag="VKJ77_03065"
     CDS             complement(5562..5816)
                     /locus_tag="VKJ77_03065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44285.1"
                     /translation="MQYAEIAYENVVLIPLAAYDDGLYAAMLIVREVNGVQRATGVLG
                     HFPCPVDARKFALAYGMAEIDERRHAPQQRVMQQSFDQAA"
BASE COUNT         1251 a         1870 c         1904 g         1372 t
ORIGIN      
        1 gcagcttgtg gttttcgcat catccgggca cgtcgagcat gggcaggctc ctcgtcctgg
       61 cgctttttac aacattgatc ggcgcagtga tatttcagcc ggttctaatg gggaaacccc
      121 gggtgcgggc aagaaaagtg gccaaaaccc tgtagaccgt ccctttaaac gtactaacta
      181 ctttacgcag accccaagga aaccgaccca tgaggatggc aaaaacgcct gatgccgccc
      241 gcaaactgcg agcgctctcc ggcggcgtgc tgctcgccgc tgctttcgcc ctgtccggtt
      301 gcgcctctgg ccccaccgcc aagccgggcg atccgctgga accgatgaac cgcgagatct
      361 tcaagttcaa cgacgccgcc gataaatacg tcgcccgccc gatcgcaacc ggttacgtaa
      421 aagtcacgcc ggcgccgttg cgcacggcga tcagcagctt cttttcgaac atcggcgaca
      481 ttggcaactt cgcgaacaac ctgctgcagc tgaagatcac cgacgcaacc gaagacttca
      541 tgcgcatcgc gatcaactcc acgctgggta ttggcggctt gttcgactgg gcttcagccg
      601 ccgggctgcc gaaacacgat caggacttcg gtctgacgct gggccattac ggcgtaccgt
      661 cgggaccgta tctggtgttg ccgctgctcg gcccgagttc ggcgcgcgat gcaacgaact
      721 ggattgcgag tattccgctc aatccgggca cttacttgag tacggaagcg gacgtgtcgt
      781 tgttcgtcat gcggtttgtc agcgcgcggg ccgatttgct gggtgcaacg gacatcctgt
      841 cgcaagccgc gctggataaa tatgcgttcg tccgcgatgc ctacacgcag cgtcgacaat
      901 atctgctgac aggtgcggcg aacgccaagc tgccggatta cggcgatgac agcggtgcta
      961 ccgctgcgcc tgcggatggc gcaagcgcga cgacagcgcc ggcgaagccg ggcatgggcg
     1021 ggagcagcag ttcgcaaggc ttgccgaact acgctgatcc gggcgcggcc gcaccggcgt
     1081 cggcaccggc tgggaagtaa tttagtttta gctcgcgata cggctgccgt atcgcgagtg
     1141 cctgtgagta cttttataga gcccgctcgg ccttgtgctg tttccaacgg ctgattagcg
     1201 tcgagcgctc tcgattctcg cgttgcggca tcccaagctg agcgcgcagc atcccccgat
     1261 ccagttcctt ctcccaaggc tacatcacgg cagcccaggg atggcgctcg aagtggcgct
     1321 tttcaaaggc ttcgatgtca gcgagagcgg tcagcgtcag gtcgatcgtg tccatacctt
     1381 cgatcaccat gcgcttgtgc cgcgcgccca gcgggaactt gaagatctgc gcgcttgttg
     1441 ttgagcgaac cgtctgcgct tccaggtcga taaggatctt cgacgccgga tcatccgtcg
     1501 attcacgcag caaaccgtcc accgcttcac gctcgagttg cacgagcagc aggcgattgt
     1561 tcatcgcgtt ggagtagaag atttcggcga agctgggtgc aatcacggcg tcgaaaccgt
     1621 actgctgaag tccccatacc gcatgttccc ggctcgatcc acaaccgaaa tttgctccac
     1681 cgatcaggac gcgcgcgccg ttataggcgg gctggttaag cacgcaatct gcgagcggtt
     1741 cgccgtgttc atcgaagcgc aggtcgtaga gcaaaccttt gctcaaaccc gctttgtcga
     1801 tgatgcgaag gaactgcttc ggcatgatct gatcggtgtc gaggttctca attggcaacg
     1861 gcaccgcgct gccttcaatc acggtcacat tagtcatggt gattctccag cgaacggacg
     1921 tcggtgatct tgccggtcag cgcggcggcg gctgccatcg cgggactcat caaatgcgta
     1981 cggccgcccc gcccttgccg gccttcgaag ttgcgattcg ttgttgatgc gcagcgttcc
     2041 cccgcttcga ggaagtcatc gttcatcgcg aggcacatcg agcatcccgg ctcgcgccat
     2101 tcgaagccag cggtttctaa aatctccgcg atgccttccg cttcagcctg ccgacgcacc
     2161 gagcccgaac ccggcacgac catcgcgcgt acgcctgctg caaccttgcg cccccgcacg
     2221 atcgacgcaa cgatgcgcaa atcctcgatc cgcccattcg tgcatgagcc gataaacaca
     2281 cggtcgatcg gcgttcccgc gatcggctgg tttgactcga ggccgatgta gtcgagcgca
     2341 cgacgcaatg cggcggcagc ttcgggcgtg gcttgttggg cggcgtcggg cacgagggca
     2401 tcgacacgca tcgcctggtc ggggctcgtg ccccacgtga cgaagggcgc gatgtcgcgg
     2461 gcatcgaagg tgtattcggc gtcgaaggtg gcatcggcgt cggattttaa atcgctccag
     2521 tcggagagcg ctgcttgcca ggcggcttcg tctagcgatg ttgcgtgcgc ccggacgtag
     2581 tcgaacgtgg ttttatccgg cgcgattaaa gccgcccgtg cgcccgcttc cacggtcatg
     2641 ttgcacaacg tcatgcgcgc ttccgccgac agcgacgcga tagtcgagcc tctaaattcc
     2701 accgcatacc cccgcgcccc ttgagcgcca atctggctga tgatccagat gatcacgtcc
     2761 ttcgatgccg tgccataagg caaagcgcca tcgatggtga tgcgcatggt cttcgccacg
     2821 cgatacgcca gcgtctgcgt ggcgagaacg tgctcaacct ccgatgtacc gataccaaac
     2881 cccagcgccc ccagcgcgcc ataggtggtc gtgtggctat cgccgcagag caccgccatg
     2941 ccggggcgga tcaaacccag ttccggcgcg atgatgtgtt caatcccctg cagcggatcg
     3001 ttcgccgcga acagccggat gcccgccttg tcgcaattgc gcgcgaggtt ttcggcttgc
     3061 agcaatgaag cggcatcgcg aatcacgcgc ggcgattccg cgtgcgttgg aatgatgtgg
     3121 ctcaccacgg cgagttgctg cttcgggcga cgcaccgtgc gatgcttttc agcgagcccg
     3181 ctgaacgcct gcggactcgt gtactcgttc atcagatgca gatcgacgta gagcagcacg
     3241 ttttgatcgt cgatacgcgt aaccgtatgc gagtcgacga gctttttata aaaggtattg
     3301 tggttcgaca tgatgctcag ccctgaagaa acggcagcac acgctcgagc agcaactcgg
     3361 gcgcttcttc cggaatgtag tggccgcatg gcagcgagtg gccgctgacg ttattggaga
     3421 gatgcttcca ttcggcgata ggatcgaagc acttttcgat cacgccttcc gcgccccata
     3481 gcgcgagaaa atcgcaggtt atcttctggc ccttcgccaa cgattcgcgg tcgtgttcca
     3541 gatcgatcgt gatgctcgcg cgatagtcct cgcagatgcc atgagcggtt tccggctgtt
     3601 tcaagcagcg caaatattcc gcgtatgcct cgggcgtgaa cggcttcaac cccgcactgc
     3661 gcgcgccgat ggtctgcttc agatacaggt cggcgtccgc acgaatcagc gtctcgggga
     3721 acggcgcggg acggaccagg aagaaccagt gccaataagc gcgagcgaat tcgaacgagg
     3781 tcttctcgta catcgcgagc gtcggcgcta cgtcgagcgt gatcaatttc ttgacgaccg
     3841 ccggatgatc cagcgccata cgcgccgcca cccgcccacc gcgatcatga gcgagcaccg
     3901 cgaacgattc gtaacccagc gcgcgcatca ggtcgacctg atcctgtgcc atacggcgct
     3961 tcgaataatt gctgtgatcg ggcaagcctt ctggtttgcc gctgtcgcca taaccgcgca
     4021 gatccgccgc cacgacggtg aagtgcttcg tcagctcggg cacgaccttg tgccagatcg
     4081 cgtgggtttg gggatggcca tgcaacagca gcaatgcggg gccgttgcca ccttgtattg
     4141 ccttgatcct gacgccatcg acggttgccg atacgtcctt gaagtcatcg aacatgattg
     4201 tctccagcag ttttatgaag tttaattgat gcatttaccg atacagtttc tattcaggca
     4261 atccagactt aacttccagg aactaatcga tggacggttt ttcggacctc aatttgttca
     4321 cgctcgtcgc gcggcatcgc aatctggcag cggccgcacg cgatctcggc gtgaccccgc
     4381 cttccatcag caagcgtctc gcgcaactcg agcggcggct cggcgtgcgg cttttaaacc
     4441 gcaccacgcg gcgcgtcagc ctcacgcccg agggcgagct atatctggcg aacggctcgc
     4501 gcatcctcga tgaactcgcc gaactggaac aactcgtcac gaaaagccga gcggagccga
     4561 cgggtttgct gcgcgtgaat gcatcgtttg gatttgggcg cagccggatt tcaccggcgg
     4621 tatcgaagtt catcgagcga tatccggcga tcaagattca gcttcatctg tcggaccggc
     4681 cggtgaattt gcaggaggaa ggtttcgacc tgggcgtgcg tttcggcgat gtccccgacg
     4741 cgcgcatcaa cgcgcgcttg ctgctcagga accggcggat tgtgtgtgca tcgccgggat
     4801 atgtggagaa gcacgggctg cccgccacgc cgcacgacct gacgaggcac gcgtgcctcg
     4861 tgctgcgcga gaacgaatcc gcttacgggg catggcattt cacgcgcggc aaaaaggtgg
     4921 agaccgtcaa ggtcgatggc ccgctcagca gcaatgacgg caccgcggtg ctgcaatggg
     4981 cgttggacgg acgcggcatt gccgtgcgct cgcaatggga aacggaggca ctggtgcgtg
     5041 acgggaagct ggtggtgttg ctgaacgaat gggcgctgcc gaacgcggat atccacgcga
     5101 tctatctgga gcggcatcag ttgtccgcga agttgcggac gttcgtggag ttcctggggg
     5161 aagaactacg cgctggggcc ggccagacgg gcgctgctta atattgataa gtcgaacgtg
     5221 gccgtgtccc agtacaacga cgtgagtaag cacaccgact gatcgacctc gggcaacgcg
     5281 cgcactatgg actacgagcc acttgcccac gcccgatgtt tttctcgagt aacgagatgt
     5341 tgatcaatct ttcatctcgg gcaatgcttt attcaatgcg gccgtcgatt gggcagaaaa
     5401 aagcaggcgt ttaattaatc gatttaatgt gattatttgt atcgcaaatg agcaaatgcc
     5461 catatttaac gcgcccgctt tttggcgggc gtgttttatc gatacctata cggtttgttt
     5521 caaagcggct tggctttgac tttcgatttg gaaggccgga tttatgcggc ctgatcgaaa
     5581 gattgctgca ttactcgctg ttgcggcgca tgccgacgtt cgtctatttc cgccatgcca
     5641 tacgcaaggg caaacttacg ggcatcgaca ggacacggga aatggcccag cacgccagtt
     5701 gcgcgctgca cgccattgac ctccctgacg ataagcatgg ctgcgtacaa gccatcgtcg
     5761 tacgcggcca gcggaatcaa gacgacattc tcgtaagcga tctcagcgta ttgcatgact
     5821 gattcccccc aagttgacga ctcactactc tctcagcgca ccagtcggtc cagtgcgaca
     5881 ttgtgtttag gcattatcaa taaacagaaa acaagaatca accggaattt ccctgttgcg
     5941 ggtttatacg aggaattagt ccggtgttat gtggcgagta cttcatttat ttggtgcata
     6001 cagcatgggt gaaggcatgc ttatacacat agagtatgtc aatttgatga gatacgtggg
     6061 acaacgcatg gatgcactgt ctttgtgcgg ttaatgcttc tggtggcgga ggggtgattg
     6121 cagggttggc tgtttctgcg gttgaagccg gcggagtggt cggggtcgtc gagcttggtt
     6181 gcgtgttgtc gcgaaaccgg gcgtttgccg ggggattccg gttcccggtt gcttcgatgg
     6241 cacccagcgg accgggagat cctgcagtgc cgttttacct tcgcgtattc tgacacttag
     6301 gtttgcttgg cgaatgtgac gacgttttga ggtgctttgg tctcgatgtc aggcacgtga
     6361 tatgcgcgca ttccttacac cgacagcaat gtcctaa
//
LOCUS       DATGBK010000207         1795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_303009, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000207 DATGBK010000000
VERSION     DATGBK010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303009"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1377)
                     /gene="hpaE"
                     /locus_tag="VKJ77_03070"
     CDS             complement(<1..1377)
                     /gene="hpaE"
                     /locus_tag="VKJ77_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018480 -
                     5-carboxymethyl-2-hydroxymuconic-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:1901023 - 4-hydroxyphenylacetate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate semialdehyde
                     dehydrogenase"
                     /protein_id="HMC44286.1"
                     /translation="MRIEHLINGRPHAARDYFDTVNPANQEVLAEVARGTPEEIDSAV
                     RAAKDAFPAWAGKPAAERAKLIARLGELITKNVPEISATETNDTGQTISQTRKQLVPR
                     AADNFSYFAEMCTRVDGHTYPTSSHLNYTLFHPVGVCALISPWNVPFMTATWKVAPCL
                     AFGTTAVLKMSELSPLTASMLGNLALEAGIPAGVLNVVHGFGKETGEPLVAHADVRAV
                     SFTGSTATGNRIVQTAGLKKFSMELGGKSPFVIFDDADFERALDAAVFMIFSNNGERC
                     TAGSRILVQRSIYATFAERFTERAKRLVVGEPLDENTVIGPMISQAHLAKVRSYIDLG
                     PKEGATLACGGLETPDLPASLRKGNYVSPTVFVDVDNRMRIAQEEIFGPVACLIPFDD
                     EAHAIQLANDISYGLSSYIWTENTGRAHRVAAAVEAGMCFVNSQNVRDLRQPFGGTKA
                     SGVGREGGT"
     gene            complement(1396..>1795)
                     /locus_tag="VKJ77_03075"
     CDS             complement(1396..>1795)
                     /locus_tag="VKJ77_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HMC44287.1"
                     /translation="AGYTIANDYAIRDYLENYYRPNLRVKNRDGGTALGPWFVDAKDI
                     DDVRQLELRTTVNGTLQQRGNTRDLVTDIPALIEYLSSFMTLAPGDIILTGTPEGVVN
                     VNAGDEVVCEIEGLGRLVNVIASDADFGRV"
BASE COUNT          329 a          540 c          547 g          379 t
ORIGIN      
        1 cgtaccgcct tcgcgtccta cgcccgaggc cttggtgccc ccaaacggct gtcgcaggtc
       61 gcgcacattc tggctgttga cgaaacacat gcccgcttcg actgctgccg ccacacggtg
      121 cgcgcggccg gtgttttccg tccagatata actcgataac ccgtacgaaa tatcgttggc
      181 aagttgaatg gcgtgggcct cgtcatcaaa gggaatcagg caggccaccg ggccgaagat
      241 ttcttcctgc gcgatacgca tgcggttgtc cacgtccacg aacacggtgg gcgagacata
      301 gttgcccttt ctcagcgacg ccggcaggtc gggagtttcc agtccgccac acgcaagcgt
      361 ggcgccttct ttcggcccca ggtcgatgta gctgcggacc ttggcgagat gggcctgact
      421 gatcatcggg ccaatgaccg tgttttcgtc aagcggctcg ccaaccacaa gccgcttcgc
      481 tcgctctgta aaccgttcgg caaacgtggc gtagatagag cgctgcacca ggatgcgcga
      541 cccggctgtg caacgctcgc cgttgttgga aaagatcatg aagaccgcgg catcgagcgc
      601 gcgttcgaag tcggcatcgt cgaaaataac gaacggtgac ttgccgccga gttccatcga
      661 aaacttcttc aggccggccg tttgaacgat ccggttgccg gttgccgtgg aaccggtaaa
      721 ggacacggca cgtacgtcgg catgggccac aagcggctca cccgtctcct tgccgaagcc
      781 gtgcaccacg ttcaaaacgc ctgcgggaat gccggcttcc agggcaaggt tgccgagcat
      841 cgatgccgtc agcggcgaca gttcgctcat cttgagcacg gccgtggtgc cgaacgcgag
      901 gcacggcgcc accttccatg tggcggtcat gaacggtacg ttccagggcg aaatcagcgc
      961 acatacgcca acgggatgga acaacgtgta gttcaggtgc gaactggtcg gatacgtgtg
     1021 gccgtcgact cgcgtgcaca tttcagcgaa gtaactgaag ttgtcagcgg cgcgtggaac
     1081 cagttgtttg cgggtttgcg agatcgtttg ccccgtgtcg tttgtttccg tcgcagagat
     1141 ttccggcacg ttcttcgtga tcaattcgcc gagtctcgcg atcagcttcg cgcgctcagc
     1201 cgccggtttg ccggcccatg caggaaaggc gtctttcgcg gcacgcacgg ctgaatcgat
     1261 ttcttcgggc gtgcctcgcg cgacttcggc caggacctcc tggttcgcgg gattcacggt
     1321 gtcgaaatag tcgcgtgctg cgtgcggcct gccgttgatc agatgctcaa ttcgcatggt
     1381 gttcccccca gtcggtcaaa cgcgtccaaa gtccgcgtct gacgcgatga cattgacaag
     1441 ccggccgaga ccttcgatct cgcacacgac ttcgtcgcct gcattgacgt tcaccacgcc
     1501 ctcgggtgtc ccggtgagga tgatgtcgcc gggtgcgagc gtcatgaagc tgctcagata
     1561 ttcgatcagc gccggaatgt cagtgaccag atcacgcgtg ttgccccgct gctgcagcgt
     1621 gccgttgacg gtggtgcgca attccagttg gcggacatcg tcgatatcct tggcatcgac
     1681 gaaccagggt cccagcgccg ttcctccgtc gcgatttttt acgcgcaggt tagggcgata
     1741 gtagttctcg aggtaatcgc ggatcgcgta gtcgttggcg atcgtataac cggcg
//
LOCUS       DATGBK010000208         4283 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_95130, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000208 DATGBK010000000
VERSION     DATGBK010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4283
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95130"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2033)
                     /locus_tag="VKJ77_03080"
     CDS             complement(<1..2033)
                     /locus_tag="VKJ77_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015473 - fimbrial usher porin activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
                     /protein_id="HMC44288.1"
                     /translation="MKLSAQTAFNAQYPAAFRLRLKPLAAIAFSMMACGAIPQAVADA
                     AITPQTQTGAVDEVSFDNMYLRGDAGSAVDTSRFTRGNAVTPGTYSVDLIVNGARLAR
                     EDIRFVSTDGKLGSKPCFSRALLQRAGVDLAKADTAAGRSAATAAANAETCEELGTIV
                     PGATVDFDFTQQTLELSVPQAFMKNSARGYVPPEQWDQGVNGGFLSYNANTYHTAGSG
                     VGSSQSYLGLSAGVNIGAWHIRHQSSVSAATGQKTQFDNIATYAQRDITKLGSQLTVG
                     DASTTGEIFDGVSFRGVQLATDDRMLPESMRGYAPVVRGTAETNARVTIRQNGQVLQE
                     TNVAPGPFEISDLYSTGYGGDLVVTVTEADGRSKEFTVPFASVAQLLRPGVTRFSATA
                     GQLRNDSLDTKPVFGQFTIQRGLTNTVTAYGGVVASSGYGAMNVGGALNTGIGAFSMD
                     VTGAFTSIPNAQSMHGTSLRVGYSKFIAATDTNVSVAAYRFSTAGYMNLNDAATVRDM
                     ADHGGDINSIYRQRNRMQVSVNQKLGDHGTMFVTGSSQNYWNRGGADTLFQAGYTNAF
                     KYGTYSLTAGRTRSMDGQMSNDFMLSTTIPLGHKAHAPMLTTNASHTSDGATNMQANV
                     SGSLGETNQFSYNGYGTYNAGGSSVNNGNAGASATYRAPYATLNASASAGGGTR"
     gene            complement(2213..2956)
                     /locus_tag="VKJ77_03085"
     CDS             complement(2213..2956)
                     /locus_tag="VKJ77_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HMC44289.1"
                     /translation="MKSINRIACGLGLVAALVAGSAGASVTVGGTRVVYPLENREVTV
                     KLTNDRAEPSLVQVWMDKGNADAKPSEASAPFVLTPPIFRMDANKSQTLRMMYTGDAL
                     PQDRESVFWLNVLDVPPKTAKTSDTNTLQFAFRTRIKVFARPKGLPGTADEAAGKVTW
                     KLVPSADNKGYDVKATNPTAYYVSFSKIDVVGAGQTYTNDVGGMVEPRGTAQFPVKNL
                     KAIPANAHVKYQGISDFGGSLPFDAAITQ"
     gene            complement(3043..3603)
                     /locus_tag="VKJ77_03090"
     CDS             complement(3043..3603)
                     /locus_tag="VKJ77_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009289 - pilus [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HMC44290.1"
                     /translation="MKSFISTLAAAATLATMALASTGASAADGTITFTGAVTDTTCSI
                     DAKTVGAADKNVTLPTVTDSTLGSKGATAGTSSATDLTFALSKCSTETKAVARFENGP
                     TIDQTTGYLTNQAPAGAENVQVRLLNASHLPINVVTGENNDMAGNGVAIVSGDANLKY
                     FAEYYATGKATAGPVSTSVQYTVDYQ"
     gene            complement(3995..>4283)
                     /locus_tag="VKJ77_03095"
     CDS             complement(3995..>4283)
                     /locus_tag="VKJ77_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44291.1"
                     /translation="AVFTLTMSAFSNLVGVFPPECFPTEVRASGVGLAIACSRLGSAI
                     GTFLLPVGIAEIGFHYTMMVLAAVLLIGMIVSIAWAPETRNLTLRAASGSS"
BASE COUNT          822 a         1305 c         1278 g          878 t
ORIGIN      
        1 cgcgtgccgc cacccgcgct cgccgacgca ttcaacgtcg cgtacggcgc acgatacgtc
       61 gcgctcgcac ccgcgttgcc gttgttgacc gaactgcccc ccgcgttata cgtgccatag
      121 ccgttgtacg agaactggtt cgtttcaccc agcgaaccac tcacgtttgc ctgcatgttc
      181 gtcgcgccgt cggaggtgtg cgaggcgttc gtggtcagca tcggcgcatg cgccttgtgg
      241 cccagcggaa tggtcgtgct cagcatgaag tcgtttgaca tctggccgtc catcgaccgc
      301 gtgcgacccg ccgtcaaact gtacgtgccg tacttgaacg cgttggtgta gccggcctgg
      361 aacagcgtgt cggcgccacc ccggttccag tagttctgcg acgagcccgt cacgaacatc
      421 gtgccgtgat cccccagctt ctggttcacc gacacctgca tgcggttacg ctgcctataa
      481 atcgagttga tatcgccacc gtgatccgcc atatcccgca ccgtcgccgc atcgttcagg
      541 ttcatgtacc ccgctgtcga gaagcgatac gcggcgaccg acacgttcgt gtccgtcgcc
      601 gcgatgaact tgctgtaccc cacgcgcaag ctcgtgccgt gcatcgactg cgcgttcggg
      661 atgctggtga acgcgcctgt cacgtccatc gagaacgcgc cgatgcccgt gttcaacgca
      721 ccacccacgt tcatcgcgcc ataaccgctc gacgcaacca cgccgccata agcagtgacg
      781 gtgttcgtga gaccgcgctg gatcgtgaac tggccgaaga cgggtttcgt atcgagcgaa
      841 tcgttgcgca attggccggc ggtcgcgctg aaacgcgtga cgcctgggcg cagcaattgc
      901 gccaccgatg caaacggcac cgtgaattcc ttgctgcggc catcggcttc ggtcacggtc
      961 accaccagat cgccaccgta gccggtcgag tacaggtcgc tgatttcaaa cggacccggc
     1021 gcgacgttcg tttcctgcag cacctggccg ttctggcgga tcgtcacgcg cgcattcgtt
     1081 tccgccgtgc cgcgcacgac cggcgcgtaa ccgcgcatcg attcaggcaa catgcggtcg
     1141 tcggtggcca gttgcacacc gcgaaacgac acgccgtcaa agatctcacc ggtcgtgctc
     1201 gcatcgccca cggtcagttg cgagcccagc ttggtgatat cgcgctgcgc ataggtcgcg
     1261 atgttgtcga attgcgtctt ttgtcccgtc gcggccgaca ccgacgattg atggcggata
     1321 tgccacgccc caatgttcac gcccgcgctc aagcccagat agctctggct cgagccgacg
     1381 cccgatcccg ccgtgtgata cgtgttggcg ttgtagctca ggaaaccacc gttcactccc
     1441 tggtcccact gttcgggcgg cacataacca cgcgccgaat tcttcatgaa cgcttgcggc
     1501 acgctcagtt cgagcgtctg ctgtgtgaag tcgaaatcga ccgttgcgcc cggtacgatc
     1561 gtgcctagtt cttcgcaggt ttctgcgttt gcagcagccg ttgcagcgct acgtcccgcg
     1621 gctgtatcgg cctttgccag atccacgccc gcgcgctgca acaacgcgcg gctgaaacag
     1681 ggctttgagc ccagcttgcc gtcagttgaa acaaagcgaa tgtcttcacg cgccagacgc
     1741 gcgccattca caatcaggtc gaccgaatac gttcccggcg tcacggcatt gccgcgcgtg
     1801 aaacggctgg tgtcgacggc gctgccggca tccccacgca agtacatatt gtcgaaactg
     1861 acttcatcga cggcgccggt ctgggtttgc ggcgtgatcg cggcatccgc cacggcttga
     1921 ggaatcgcac cacacgccat catcgagaaa gcgatcgcgg caagcggctt caggcgcagc
     1981 cggaatgcgg ccgggtactg agcattgaat gcggtttgag cagagagttt catgattcag
     2041 cctgcgatga gtgggtcagt tcagacgcga cttgacccat cgggctgttc ggacagtccg
     2101 ctcggtaaaa cgcgtgttga gtggtggggg aaggcgtcgg ctcggtacgg cccgcgacac
     2161 cttcaatccg ccccggtgcg gggcgaagcc ttacggcgag tcttgctggg ccttactggg
     2221 taatagccgc gtcgaacggc agggagccgc cgaaatcgct gataccttgg tacttgacgt
     2281 gcgcgttagc gggaattgcc ttgaggttct tcaccgggaa ctgcgcggta ccgcgcggct
     2341 cgaccatgcc gcctacgtcg ttcgtatagg tctggccagc acccaccaca tcgatcttgc
     2401 tgaacgacac gtagtacgcc gtcgggttcg tcgccttcac gtcgtagccc ttgttatcgg
     2461 ctgagggcac cagtttccag gtcacctttc cagcagcttc atccgccgta ccgggcaaac
     2521 ccttcggacg tgcaaacacc ttgatacggg tgcgaaacgc aaactgcagc gtgttggtgt
     2581 ccgatgtctt cgcggtcttg ggcggcacgt caagcacgtt cagccagaac accgactcac
     2641 ggtcctgcgg cagcgcatcg cccgtgtaca tcatgcgcaa cgtctgcgac ttgttggcat
     2701 ccatgcggaa gatcggcggc gtcagcacga acggcgcgct cgcttcactg ggcttggcat
     2761 cggcattgcc cttgtccatc cagacctgca ccagcgacgg ttcagcgcgg tcgttggtga
     2821 gcttcaccgt cacctcacga ttttcaaggg gatacaccac ccgcgtgccg cccacggtca
     2881 cgcttgcgcc agcactgccg gccacgaggg ccgccaccag acccaaacca catgcaattc
     2941 gattaatgga cttcatgatt ggtgcatctc cgtgaaaaac gtatctcgaa atttcggtaa
     3001 aaaaaacagg catctgcacc cgcagatgcc tgttgatacg gcttactggt agtcgaccgt
     3061 gtactgaacc gaggtgctga ccgggcccgc tgttgccttg ccggtggcgt agtactcagc
     3121 gaagtacttc aggttcgcgt cacccgacac gatcgccaca ccgttgcctg ccatgtcgtt
     3181 gttttcgccc gtgacgacgt tgatcggcag gtgcgacgcg ttgagcaaac gaacctgaac
     3241 gttctctgca ccggcgggtg cctggttcgt cagataaccg gtggtctggt cgatcgtcgg
     3301 accgttttcg aaacgcgcga ctgccttcgt ttcggtcgag catttgctca acgcgaaggt
     3361 caggtcggtg gcagaagatg taccggccgt tgcgcccttt gagcccaggg tgctgtccgt
     3421 caccgtcggc aacgtgacgt tcttgtcagc ggcgccaacc gtctttgcat cgatcgagca
     3481 agtcgtatcg gtcaccgcac ccgtgaaggt gatcgtgccg tcagcagcgc ttgcgccggt
     3541 tgaagccaaa gccatagtgg cgagagttgc agcagcagcg agggtggaga tgaatgattt
     3601 catgaacgtt tccagtagag aaatgaataa gggtttgtag acgcttacag cgcttaggac
     3661 tacttcgtcc cgtgataccg agcgcgcagg gcgagccacc tgttttttca tcgtctggat
     3721 tcgtgtggga ggcgatgaac cggttcgtct gcgagtgaat gaatattaag gttcagcgcc
     3781 tcagatgacc ctcggaaccc tcttaaagaa ttaggacaaa attgagaatt tttaagagcg
     3841 aaatggtggg ggggtgggat gaggtgaggt gatcgctgtc atgaacgcct aaaagcccaa
     3901 aggcgtccgc gatgcggacg cctttgggct tttagatggg ttcagatggg tgagggtttt
     3961 cgggagcagt gcggttgcgc ggggaacggt gcggttatga ggaaccgctt gcagcgcgca
     4021 aagtgaggtt acgcgtctcg ggcgcccagg cgatcgagac gatcatgcca atcaacagca
     4081 cagcggccag caccatcatt gtgtaatgga acccgatctc cgcgatgcca accggcaaga
     4141 ggaacgtgcc aatcgccgaa ccaagccgac tgcatgcgat ggctagcccg acacccgatg
     4201 cgcgcacttc tgtcggaaag cattccggag ggaagacacc aacgagattg ctgaaagccg
     4261 acatggtcaa ggtaaagaca gcg
//
LOCUS       DATGBK010000209         4449 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_279977, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000209 DATGBK010000000
VERSION     DATGBK010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4449
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279977"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..740
                     /gene="proB"
                     /locus_tag="VKJ77_03100"
     CDS             <1..740
                     /gene="proB"
                     /locus_tag="VKJ77_03100"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HMC44292.1"
                     /translation="LLRLGCVPIINENDTVITDEIKFGDNDTLGALVANLIEGDALII
                     LTDQRGLFTADPRHDPTATLVEQADAGTPELEAMAGGAGSSLGRGGMLTKILAAKRAA
                     HSGANTVIASGRESDVLTRLASGEMIGTQLMARTARMAARKQWMADHLQVRGHVVIDD
                     GAVEKLTAGGKSLLPIGVIDVHGAFARGEVIACMNPGGQEVARGITNYSSSEARLIQR
                     RPSGEIETVLGYMLEPELIHRDNLVLA"
     gene            complement(828..1034)
                     /locus_tag="VKJ77_03105"
     CDS             complement(828..1034)
                     /locus_tag="VKJ77_03105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44293.1"
                     /translation="MTQLDSRLLSEYAFQRTAGAAMRLASRDLAHREASGIGQSTADQ
                     EDDSVNEGAEINTFIRTIGAQETK"
     gene            complement(1224..1778)
                     /locus_tag="VKJ77_03110"
     CDS             complement(1224..1778)
                     /locus_tag="VKJ77_03110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNP1-like family protein"
                     /protein_id="HMC44294.1"
                     /translation="MKAIALFAASAAALAVLAGCGSSKPTNKDDSAFVYLMDRTPNWV
                     ENKVDTLPPLPQDANLLGITVSENTPLSFFIDKNSLSVGNDGVIRYTIVVKSPAGARN
                     VNYEGIRCDNYNWRLYASINEDQTDWDRAVENDFRRIENGELNSYHAALYQDYFCANK
                     LPTGSAKQILQNIQMKRTAVSNYH"
     gene            complement(1958..2608)
                     /locus_tag="VKJ77_03115"
     CDS             complement(1958..2608)
                     /locus_tag="VKJ77_03115"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HMC44295.1"
                     /translation="MLDREGFRPNVGIILLNAHNEVFWGKRLREHSWQFPQGGIKYGE
                     TPVQAMYRELHEETGLLPEHVKVVGRTRDWLRYEVPDKFIKREVRGHYRGQKQIWFLL
                     RMVGRDCDICLRATDHPEFDAWRWNEYWVPLDAVIEFKRDVYQLALTELSRFLRRAVV
                     RAERAERMAPHANRYPRLIQGMTLEDAAVSANGGIVQAECSVTEELHIYAQRPSRD"
     gene            2840..>4449
                     /locus_tag="VKJ77_03120"
     CDS             2840..>4449
                     /locus_tag="VKJ77_03120"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HMC44296.1"
                     /translation="MKASRFFIGTLKEAPTDAEIVSHQLMMRAGMIRRVAGGIYSYLP
                     IGLRSIRKVEAIVREEMNRAGALELLMPAVQPAELWQESARWEQYGPELLRIKDRHDR
                     DFVIGPTHEEVVTDIARREIKSYRQLPVNFYQIQTKFRDEIRPRFGVMRGREFIMKDA
                     YSFDRDQAGLAESYKKMFDAYVRVFTRIGLEFRAVAADNGSIGGSGSHEFHVIADTGE
                     DAIAYCPTSDYAANVEAADALPLNATRPAPTEEMKKTATPGKAKCEAVAELLNIPLER
                     TIKSIILATENEGAEPTIWLLMLRGDHSLNDIKANKQPGLAGYRFATEAEIIDTFGTP
                     PGYLGPLNTKKPIKVIADRTVANMSDFVVGSNEVDYHTTGVNWGRDLPEPVVADIRNV
                     LAGDPSPDGKGVLEICRGIEVGHVFQLGTKYSDAMGASFLDENGKPAPMQMGCYGIGI
                     TRILGAAIEQNFDAKGIIWPESIAPFEVVLCPMGYDRSEAVREQADKLYAALQAAGID
                     VVLDDRGERPGVMFADWELIGVPHRLVIG"
BASE COUNT          933 a         1294 c         1322 g          900 t
ORIGIN      
        1 ccttgctgcg cctgggttgc gtgccgatca tcaatgaaaa cgacaccgtc atcaccgacg
       61 aaatcaaatt cggcgacaac gacacgctcg gcgcgctggt agcgaatctc atagaaggcg
      121 acgcgctgat tatcctcacc gatcagcgcg gcttgtttac cgctgatccg cggcacgatc
      181 cgacggccac gctggtagaa caggccgatg cgggcacacc ggaactcgag gccatggcag
      241 gcggcgcggg gtcaagcctg ggacgcggag gcatgctgac gaagatcctc gcggcgaaac
      301 gcgcggcgca tagcggcgcg aatacggtga tcgcgagcgg gcgggagtca gatgtcctga
      361 cccggctggc gtcgggcgag atgatcggta cacaattaat ggcgcgcacg gcccgtatgg
      421 ctgcccgcaa gcaatggatg gccgatcatt tgcaggtgcg tggccacgtg gttatcgacg
      481 acggtgcggt cgagaagctc actgcgggcg gtaaaagctt gctgccaatt ggcgtgatcg
      541 atgttcacgg tgcattcgct cgcggtgaag tgatcgcgtg catgaacccg ggcggacagg
      601 aagtggcgcg cggcatcacg aattacagca gttcggaggc gaggttgatc cagcggcggc
      661 cgagcggtga aatcgaaacg gtgctcgggt acatgctgga gcccgagctg attcatcggg
      721 acaatctggt gctggcgtga cgacggaggc ttctgtccaa cacaaaaagc tgctgatctc
      781 cggtgcaccc caaactcctt ggacgatgcg caacgtcgcg gcgccggcta tttcgtttcc
      841 tgagcgccga tggttcggat aaacgtgttt atttccgcgc cttcatttac tgaatcgtct
      901 tcctgatccg ccgttgattg cccgatgccc gatgcctccc tgtgcgcgag atcgcgcgag
      961 gccaggcgca tggccgcacc tgccgtacgc tggaacgcgt attcggacag cagccttgag
     1021 tcgagctggg tcaccgttat ttctcctcgt tattacgtat tactgaatct tcccgatcga
     1081 ttgtatgtga gcgattaata aatcggcgat agttgccaca atttatctct attgcgtgac
     1141 ggcatcttgt aaaacgatgc gtcaaccgac aaaaaagccc gctggccgtc aggcgcagcg
     1201 ggctttttca acagcgtttc ggcctagtga tagttcgaaa ctgcagttcg cttcatctgg
     1261 atgttctgca aaatctgctt ggccgacccc gtcggcaact tgttcgcgca gaagtaatcc
     1321 tgatacagcg ctgcgtgata ggaattcaat tcaccgtttt cgatgcgtcg aaaatcgttc
     1381 tccaccgcgc ggtcccagtc ggtctggtcc tcattaatgc tcgcatacag gcgccagtta
     1441 tagttgtcgc agcgaatgcc ttcgtaattg acgttgcgcg cgccggccgg gcttttcacg
     1501 acaattgtgt agcggatgac accgtcgttt cctacgctga gcgagttttt atcgatgaaa
     1561 aaactcagcg gcgtattttc ggacaccgtg atccccagga gattcgcgtc ctgcggcaaa
     1621 ggcggcaggg tgtcgacctt gttttcgacc cagttcggcg tacggtccat gaggtagacg
     1681 aacgcgctgt cgtccttatt tgtcggcttg gagctgccgc aaccggcgag cacggcaagg
     1741 gctgccgcgg atgccgcgaa caatgcaatg gctttcaatt cttgatttcc tgaggttgat
     1801 gcagaagcga ctgcaaatcg atcgtgccac gtgaaaagcg ccgcgattgt cccgcaaacg
     1861 gacacgccgg catgtcaaac acgcgagccc agccttcgac gctgcacgaa aaaaagcggc
     1921 gtgcgttgcc gcaccgccgc ttcgaatgac acacgtccta atcccgcgaa ggacgttgtg
     1981 cgtagatgtg cagctcttcg gtcaccgaac attctgcctg aacgatgccg ccgttagcag
     2041 aaacggccgc gtcttccaga gtcatgccct gaatcaaacg cggataacga ttggcgtgag
     2101 gcgccatccg ttccgcgcgc tcagcgcgca caactgctcg cctcaaaaag cgagaaagtt
     2161 cagtgagcgc aagctgatat acatctcgct tgaactcgat caccgcgtcg agcgggaccc
     2221 aatactcatt ccaccgccag gcatcgaatt ccggatgatc agtcgcacgc aaacaaatgt
     2281 cacagtcgcg gcctaccatg cgtaacaaaa accagatctg tttctgtccg cgatagtgtc
     2341 cgcgcacctc gcgcttgatg aacttgtccg gcacctcata acgcagccag tcgcgggttc
     2401 gacccacgac cttcacgtgc tccggaagca aaccggtttc ttcgtgtaac tcccgataca
     2461 tcgcttgcac aggggtctca ccgtacttga tgcccccttg cggaaactgc caggaatgtt
     2521 cacgcagccg cttgccccaa aacacttcgt tgtgcgcgtt caagaggatg atgccgacgt
     2581 tcgggcgaaa gccttcacga tccagcatac aaccaccttc gaatccttta aaattgcttt
     2641 gattataaac agataacggg cctggcgcac cggcacgaac ccgaatcggg gttcgtttcg
     2701 cctgggtgcc ggggcggtcg gccaacgcct tgccgcatcg ctgtcccgtc gttcactcgt
     2761 tccgcacgtt ctgcatgttc cgcaggtttg ggcgaaaagc ccattcaatc gacgcgctcc
     2821 cgcattggaa aatttttgaa tgaaagcatc ccgtttcttt atcggcaccc tgaaggaagc
     2881 tcccaccgac gcggaaatcg tcagccacca actcatgatg cgtgcgggca tgattcgccg
     2941 cgtggccggc ggtatctata gttacctgcc tattggcctg cgctccatcc gcaaggtgga
     3001 agccattgtg cgtgaagaaa tgaaccgggc cggcgcgctc gaattgttga tgcccgccgt
     3061 gcagccggcc gaactctggc aggaatcggc gcgctgggaa cagtacggcc ccgaactgct
     3121 gcgtatcaag gatcgccatg accgcgattt cgtgatcgga ccgacgcacg aggaagttgt
     3181 gacggacatc gcgcggcgcg agatcaagag ttaccggcaa ctgccggtca atttctacca
     3241 gatccagacc aagttccgcg atgaaatccg gccgcgtttc ggcgtgatgc gcgggcgcga
     3301 attcatcatg aaggacgcgt attccttcga tcgcgatcag gccggcctcg ccgagtcgta
     3361 caagaaaatg ttcgatgcct acgtgcgagt gttcacgcgc atcggcctgg aattccgcgc
     3421 ggttgcggcc gataacggct cgatcggcgg cagcggttcg catgaattcc acgtaatcgc
     3481 cgacaccggc gaagacgcaa tcgcgtattg cccgacctcg gattacgcgg caaacgtgga
     3541 ggcggcggac gcattgccgc tgaacgccac gcgtccggcg cccacggaag agatgaagaa
     3601 gacggccacg ccgggcaagg cgaagtgcga ggcggtcgcg gaattgctga acattccgct
     3661 ggaacgcacg atcaagtcga tcattctcgc gacggaaaac gaaggcgccg agccgaccat
     3721 ctggctattg atgttgcgcg gcgaccattc gctgaacgac atcaaggcga acaagcagcc
     3781 gggcctggcg ggttatcgct ttgctaccga agctgaaatt atcgatacgt tcggtacgcc
     3841 gcccggatat ctcggcccgc tcaacacgaa gaagccgatc aaggtaatcg cggaccgcac
     3901 ggtcgcgaac atgagcgatt tcgtggtcgg ctcgaatgag gtcgactatc acaccaccgg
     3961 cgtgaattgg ggccgcgatc tgccggaacc ggtcgtggcg gacattcgta atgtactggc
     4021 cggcgatccg tcgccggatg gcaaaggcgt gctggaaatc tgccgcggca ttgaagtggg
     4081 ccacgtgttc cagctcggca ccaagtattc ggatgccatg ggcgcgtcgt tcctcgatga
     4141 aaacggcaag cctgcgccca tgcaaatggg ctgctacggc atcggtatca cccggattct
     4201 gggcgcggcg attgaacaga acttcgacgc caagggcatc atctggccgg aatcgattgc
     4261 tccgttcgaa gtcgtgttgt gcccgatggg ctacgaccgc agcgaagcag ttcgcgagca
     4321 ggcggacaag ctctacgcgg cgctccaggc tgcgggtatc gacgtggtcc tggacgatcg
     4381 cggcgagcgc cccggcgtga tgttcgcgga ttgggagctg atcggcgtgc cgcatcggct
     4441 ggtgattgg
//
LOCUS       DATGBK010000210         1792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_256952, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000210 DATGBK010000000
VERSION     DATGBK010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256952"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..560)
                     /locus_tag="VKJ77_03125"
     CDS             complement(<1..560)
                     /locus_tag="VKJ77_03125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019658752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase zinc-binding domain-containing
                     protein"
                     /protein_id="HMC44297.1"
                     /translation="MSRPVLEVADIFRDHGAAWRRANVGHVSLDQMKVMSAIERCRTA
                     SLGGHVARCEDCPHTVIAYNSCRNRHCPKCQATAAKEWLAAREADLLPVPYFHAVFTL
                     PAAIADIAYQNKAVIYDILFTTSAETMTTIAADPKHLGARIGITSVLHTWGSAMTHHP
                     HVHMVVPGGGISIDGTRWVACRPDFIL"
     gene            complement(573..1493)
                     /locus_tag="VKJ77_03130"
     CDS             complement(573..1493)
                     /locus_tag="VKJ77_03130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011485669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HMC44298.1"
                     /translation="MSTDTVTPLRQRMIEDMNARKLCAGTQRGHIHSCKRFSAFLKRS
                     PDTATAEDIRRFQLHLSETGASICNRNRIMTGLRFLFRVTLRRLDLAAEIYHLREPQK
                     IPLVMSQDETRRLLAVASSLKVRVLLSLGYGCGLRAGEVVRLKVKHIDSAQKIIRVEQ
                     SKSRKDRNVMLSPDTLDLLRQWWKTRRRGFDSTTPVEERWLFPGQRPGKPMTTRQLNR
                     LFHEAADAAGIRKGVTLHALRHSFATHLLERGTDIRVIQALLGHDKLDTTARYARVAT
                     GMIAGVKSPLDLLSQPCKKPKMNRKDQPPT"
BASE COUNT          325 a          548 c          560 g          359 t
ORIGIN      
        1 aggataaagt ctggcctgca cgctacccac cgtgtgccat caatggagat gccgccgccc
       61 ggcacgacca tgtggacgtg cgggtgatgg gtcatggccg agccccaggt gtgcagcacc
      121 gaggtgatgc cgatgcgggc gccgaggtgc ttgggatcgg ccgcgatggt ggtcatggtc
      181 tcggccgagg tcgtgaacag gatgtcatag atcacggcct tgttctgata ggcgatgtcc
      241 gcgatggctg ccggcagcgt gaacaccgca tgaaagtacg gcaccggcag cagatcggcc
      301 tcgcgcgcgg cgagccattc cttggccgcg gttgcctgac acttcggaca atggcgatta
      361 cgacagctgt tgtaagcgat gaccgtgtgc gggcaatctt cgcagcgcgc cacatggccg
      421 ccgagcgacg ccgtgcggca gcgctcgatc gcactcatca ccttcatctg gtcgaggctg
      481 acgtgaccga cattggcgcg acgccacgcc gctccgtggt cgcggaagat atccgcgact
      541 tccagcaccg ggcgagacat gaccgcgggc cgttacgtcg gcggctggtc tttcctgttc
      601 atcttgggct tcttgcaagg ctgcgacagc agatcgagcg ggctcttgac gccagcgatc
      661 atgccggtgg cgacgcgggc gtagcgcgcc gtcgtgtcca atttgtcgtg ccccaacagc
      721 gcctggatga cgcgaatatc ggtgccacgt tcaagtagat gggtggcaaa ggagtgtcga
      781 agcgcatgga gcgttacgcc cttgcggatt ccggccgcat cggccgcctc atggaacagg
      841 cggttgagct ggcgggttgt catcggctta ccgggccttt ggcctggaaa cagccagcgc
      901 tcctctacgg gagttgtgga atcgaaaccc cgccggcgcg tcttccacca ttggcgcagc
      961 aggtcgagcg tgtcgggcga cagcatgaca ttgcggtcct tgcggctctt ggactgctcg
     1021 acccgaatga tcttctgcgc gctgtcgatg tgcttgacct tcagcctgac cacctcgccg
     1081 gcgcgcaggc cgcagccata gccgagactg agcagcacgc gcaccttgag gctgctcgcg
     1141 accgcgagca ggcgccgggt ctcgtcctgg ctcatcacca gcggaatctt ctgcggctca
     1201 cggaggtgat aaatctcggc cgcaagatcc agtcgccgca acgtcacgcg aaacaggaac
     1261 cgcaacccgg tcatgatgcg gttgcgattg cagatgctcg cgcccgtctc ggaaagatgc
     1321 agttgaaacc ggcggatatc ctccgccgtg gccgtgtccg gggaccgttt gagaaacgca
     1381 gaaaatcgct tgcagctgtg aatatggccc ctctgcgtcc ccgcgcagag cttgcgtgca
     1441 ttcatgtcct cgatcatgcg ctggcgcaac ggggtgacgg tatccgtact catgggcaac
     1501 tcctgtcttg gatgaggttg acgacacctc gatcctcaag acaggccgac tggcccgcta
     1561 ccgataatct ctcatcggtt accgcgccct cgggtaagcc cccgcttcag cgggctattg
     1621 cgcagcgatt tagtgctttt gcacttttcg gacatggcgg cctatcccaa tagcaaccaa
     1681 cgcgctttga tgatcactat agaagcgtcg tgacttctta tcttgcccac aagggcaatc
     1741 tatgtccgac aatccaacag ctgaaagcat gttcgggtct cgtgtctttt cg
//
LOCUS       DATGBK010000211         1630 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_25786, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000211 DATGBK010000000
VERSION     DATGBK010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25786"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..745)
                     /locus_tag="VKJ77_03135"
     CDS             complement(<1..745)
                     /locus_tag="VKJ77_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017843832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44299.1"
                     /translation="MSAPFLQIQRLRKTYDQVVAIDHVSLDIKKGEFMTFLGPSGSGK
                     STTLYIVAGFQSPTEGRVLLDGKSLLSVAPNKRNIGMVFQRYTLFPHLTVGENVAFPL
                     RVRRLPDAQVKSKVEQMLKLVHLGDCRDRMPDQLSGGMQQRVAIARALAYDPPVLLMD
                     EPLSALDKKLREELQTELRRIHQQTGVTILYVTHDQEEALRLSDRIAVFNKGRIEQVG
                     SGEELYAKPASRFVASFIGNSNFLPVTLAG"
     gene            complement(742..1539)
                     /locus_tag="VKJ77_03140"
     CDS             complement(742..1539)
                     /locus_tag="VKJ77_03140"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004556460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44300.1"
                     /translation="MLLDFDRLGPLRWALLGVGAAVSLFLLLPVLFIVALSFGDSQWL
                     MFPPPGWTWRWYGMLFSDPGWLDSLITSVELGVVVMVLSVVLGLFASLALTRGSFRGR
                     ALLKAFFLTPMVLPVVVLAVALYGFFLRIGLTGTLVGFVIGHLIIALPFSIIAISNSL
                     ESFDTALEDAALICGASPFEVKWRVTLPAIRLGLFAAAIFSFLASWDEVVVSIFMASP
                     TLQTLPVRIWSTLRQDLTPVIAAASSLLVGLTVILMLLGLVLKRGKS"
BASE COUNT          380 a          523 c          490 g          237 t
ORIGIN      
        1 tgcccgccag cgtcaccggc aggaaattcg agttgccgat aaaactcgcg acaaagcgcg
       61 acgccggttt cgcataaagc tcctcgccgc tgccgacctg ctcgatacgt cccttgttga
      121 acaccgcgat ccggtcggac aggcgcagcg cctcttcctg gtcgtgggtc acatacagga
      181 tcgtcacgcc ggtctgctgg tggatgcgcc ggagttctgt ctgcagttcc tcgcgcagct
      241 tcttgtcgag cgcagaaagc ggttcgtcca tcagcagcac tggcggatcg taggcgagcg
      301 cgcgggcaat cgccacgcgt tgctgcatcc cgcccgacag ctggtccggc atgcggtcgc
      361 ggcaatcgcc gaggtgcacg agcttgagca tctgctcgac cttcgacttc acctgggcgt
      421 cgggcagacg ccgcacgcgc aacggaaacg cgacgttctc tccgaccgtg agatgcggga
      481 acagcgtgta gcgctgaaac accatgccga tgttgcgctt gttcggcgcc accgacagca
      541 gcgacttgcc gtcgagcagc acgcgtcctt cggtgggcga ctgaaagccc gcgacaatgt
      601 acaacgtcgt gctctttccc gagcccgacg gcccgaggaa ggtcatgaac tcgcccttct
      661 tgatatcgag cgagacatgg tcgatagcga ccacctggtc gtaagtttta cgaagccgtt
      721 ggatctgcaa aaacggtgcg ctcacgattt acctctctta aggacaagcc ccagcaacat
      781 caggatgaca gtcaggccga ccagcagtga cgacgccgcg gcaatcacgg gcgtcaggtc
      841 ctggcgcaac gtgctccaga ttcgaacggg cagcgtttgc aaggtcgggc tcgccatgaa
      901 gatcgacacc acgacctcgt cccaggacgc gaggaacgag aagatggcgg cagcgaacag
      961 gccgagacga atggccggca gcgtcacgcg ccacttcacc tcgaacgggc tcgcgccgca
     1021 gatcagcgcg gcgtcttcga gcgcagtatc gaaactctcc agcgaattgc tgatggcgat
     1081 gatcgaaaac ggcaacgcaa tgatcaggtg cccgatcacg aatccgacga gcgtgcccgt
     1141 cagcccgatg cgcaggaaaa aaccatacaa cgcgacggcg agcacgacta cgggcagtac
     1201 catcggcgtg aggaaaaacg cctttagcag cgcacggccg cggaagctac cgcgcgtcaa
     1261 tgcgagcgaa gcaaagaggc ccaacacaac cgacaacacc atcacgacga cgcccagttc
     1321 aacgctggtg atcagcgagt cgagccagcc cggatcggaa aacagcatgc cgtaccagcg
     1381 ccacgtccag ccgggcggtg gaaacatcag ccactgcgaa tcgccgaacg acaacgcgac
     1441 aatgaacagc accggcagca gcaagaacag cgacacggcc gcgccaacac ccaggagtgc
     1501 ccagcgcaac ggtccgagac gatcgaaatc gagcagcatg tcagtgaact ccggaagcac
     1561 ccggcgcgcg gccggaaaag cgcagttgca ctgcatagag cgacagcgtc acgagcagca
     1621 gcacgaaggc
//
LOCUS       DATGBK010000212         1595 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_210601, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000212 DATGBK010000000
VERSION     DATGBK010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210601"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..401)
                     /locus_tag="VKJ77_03145"
     CDS             complement(<1..401)
                     /locus_tag="VKJ77_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RseA family anti-sigma factor"
                     /protein_id="HMC44301.1"
                     /translation="MGSVSVQSQASSRGERLSAFVDGESFDGSGDISQFLSGFTQKDR
                     AAWSDFHLIGDALRSDDLAASPAASSAFMNAFSARFEAEAHVFAPAAIPAVSAERLRS
                     RLFRRRVVPAFAVAAAAATLTWIVVPQLQGV"
     gene            complement(482..1081)
                     /gene="rpoE"
                     /locus_tag="VKJ77_03150"
     CDS             complement(482..1081)
                     /gene="rpoE"
                     /locus_tag="VKJ77_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HMC44302.1"
                     /translation="MSEKEIDQVLVERVQKGDKAAFELLVAKYQRKIIRLISRLVRDP
                     AEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAKNYLATQSRRAPTSTEADA
                     EEAETFSDADQLRDINTPESMLMSKQIAQTVNAAMAVLPEELRTAITLREIEGLSYEE
                     IAEMMNCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW"
     gene            complement(1177..>1595)
                     /locus_tag="VKJ77_03155"
     CDS             complement(1177..>1595)
                     /locus_tag="VKJ77_03155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44303.1"
                     /translation="RHTLRPSRFLWGATAAFVAVAAGSAFNCVAAYAGLFNGCVAALT
                     VTAALATAAWGGERRRPVAFEIGQDGLTTWDCAGNAQYRRIAGCAQWSDRLLALILVP
                     AEGRPTSFLVAADALANASAFRELAVRARRCAQEHL"
BASE COUNT          331 a          507 c          459 g          298 t
ORIGIN      
        1 tccacgccct gcaattgcgg cacgacgatc cacgtcagcg tggctgcggc agccgcgacg
       61 gcgaaagccg gtactacgcg gcggcggaac agccgtgaac gcagacgctc cgcggagacc
      121 gccggaatgg ccgccggcgc aaatacatgc gcttcggcct cgaaacgcgc cgagaacgcg
      181 ttcatgaacg cgctgctggc tgcaggactc gccgcgagat cgtcggaacg cagggcgtcg
      241 ccgatcaagt ggaaatccga ccacgccgcg cgatccttct gcgtaaaccc ggaaagaaac
      301 tgactgatgt cgcccgaacc gtcgaacgat tctccgtcga caaaagcgga cagacgctcg
      361 cctcgcgagc tagcttgcga ttgcaccgaa accgacccca tgatgctccc catcttgact
      421 gcaccccgta gtgacactac ctgactcaga taccgcgtcc ctgccccgcg caacttcgct
      481 gttaccagcg cttgccttcg ggagtgtcca gcaacggacg caattttgcc gcaatggctt
      541 cgcgagcacg aaaaattctt gatctgacgg tcccaatcgg gcaattcatc atttcggcaa
      601 tttcttcgta gctcagacct tcaatctcac gaagagtaat ggcggtgcgc agctcttccg
      661 gcaaaaccgc cattgcagca ttgaccgttt gtgcgatctg cttgctcatc aacatcgact
      721 caggcgtgtt gatatccctt agttggtctg cgtcggagaa agtttccgct tcttctgcat
      781 cagcttcggt agaagttgga gcacgccggc tctgagtggc aaggtagttc ttcgcggtgt
      841 tcaccgcaat ccggtaaagc caagtataaa acgccgattc tccgcgaaat tgcggcaacg
      901 cgcgataagc cttgataaag gcgtcctgcg cgacgtcctc gacctctgcg ggatcccgca
      961 cgagacgcga gataagccgg atgattttgc gctgatattt ggcgaccagt agctcgaacg
     1021 ctgctttgtc gcctttttgc acgcgttcga ccagtacctg atcgatttct ttttcgctca
     1081 cctgggaaat ccgttaactt tgggggtgct acgcggaggg ccattgtagc gttacgccgc
     1141 cggaacacgc cggatgctga cgggcggtta cacgcgttac agatgttcct gggcgcaacg
     1201 ccgggcgcgc acggccagtt cgcggaacgc ggaggcattg gcaagcgcgt cggcagccac
     1261 cagaaacgat gtcgggcggc cttccgccgg gaccaggatg agagcaagca aacggtcgct
     1321 ccactgggcg caacctgcaa tacgccggta ttgcgcgttt cccgcgcaat cccacgtggt
     1381 caaaccatct tgcccaatct cgaacgcgac aggtcggcgc cgctcgccgc cccaggccgc
     1441 agtggccagc gcggcagtca cggtcaaagc cgccacacac ccgttgaaca acccggcgta
     1501 agccgccacg cagttgaatg ccgatcccgc cgctacggcc acaaatgctg cggtagcgcc
     1561 ccagaggaac cgtgagggac ggagagtgtg ccggc
//
LOCUS       DATGBK010000213         2037 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_187629, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000213 DATGBK010000000
VERSION     DATGBK010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187629"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VKJ77_03160"
     CDS             <1..595
                     /locus_tag="VKJ77_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HMC44304.1"
                     /translation="FGTQWLTETVAFKPYACGTMIHPYIDCAIRLAARGVRADDIESI
                     VCEDAEGIVHRLWEPLAAKHAPPNPYAAKFSSPFCIAAGFILGDAGLAAFTDETVNDP
                     NIRALSAKIGYVIDPENEYPKNFTGHLRVKLKNGDVIEERQSHLRGGAREPLTAAAIE
                     AKFFANAAYGGWTHAQAARETVRSLFDGPVRLRTLSS"
     gene            complement(607..900)
                     /locus_tag="VKJ77_03165"
     CDS             complement(607..900)
                     /locus_tag="VKJ77_03165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44305.1"
                     /translation="MNDALSAQRAGLDPLAFSAVAAMRADMDAGDVALSLPGDHPAWQ
                     RDVFSISSRAKALIATIRPIVVKVLTFWDHHLRDITIGARTFGIDPSGCYRLR"
     gene            complement(897..1559)
                     /locus_tag="VKJ77_03170"
     CDS             complement(897..1559)
                     /locus_tag="VKJ77_03170"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HMC44306.1"
                     /translation="MIDREQSIRELLPLVQKIARRIGRIVGGTDPDDLVGDGSVGLIR
                     AVDSFDPSYGIALEQYARRIIAGAMLNGIRRLDPVSERVRRTIRQAERERYNLATERG
                     ALPATREMNERVPGLERARAEAYRGTPLSLDAPFPGGERLEIAAGGDPQVIVTAAADR
                     TRIRAAIATLPHRQRKLIVDHYYDNHSLRTLSDQLGVSPQRASQLHLLAIGRLRRELT
                     PA"
     gene            complement(1556..1684)
                     /locus_tag="VKJ77_03175"
     CDS             complement(1556..1684)
                     /locus_tag="VKJ77_03175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44307.1"
                     /translation="MQNALAAVVFADILKPLAASLGPFGDLATGSIAQSLFARPDK"
     gene            complement(1716..>2037)
                     /locus_tag="VKJ77_03180"
     CDS             complement(1716..>2037)
                     /locus_tag="VKJ77_03180"
                     /inference="COORDINATES: protein motif:HMM:NF018168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar basal body rod C-terminal
                     domain-containing protein"
                     /protein_id="HMC44308.1"
                     /translation="VFIDTASKTHQAAGRIDLALFYAPEHLRGLGGTMFAATRESGPA
                     HKLAAGGDGHPSIEFGMLEKSNVSIVESMMQILSAQRAYEANAKGVQAADEMLRIANN
                     LHRS"
BASE COUNT          395 a          631 c          633 g          378 t
ORIGIN      
        1 gttcggtacg cagtggctta ccgaaacggt cgcgttcaaa ccgtacgcct gcgggacgat
       61 gattcacccc tacatcgact gcgcgatccg cctggcggca cgcggtgtgc gcgcagacga
      121 catcgagagc atcgtgtgcg aagatgccga aggcatcgtt caccgcttgt gggagccgct
      181 ggccgccaaa cacgcgccgc caaacccgta tgccgcgaaa ttcagctcac cgttttgtat
      241 cgccgccggc ttcatcctcg gcgatgcggg tctcgctgcg tttaccgatg agaccgttaa
      301 cgatccaaac atccgggcac tatcggcaaa gatcgggtac gtcatcgatc cggagaacga
      361 gtatcccaaa aatttcaccg gccacctgcg cgtgaaactc aagaacggcg acgtgattga
      421 agagcgccaa tcacatctgc gcgggggcgc ccgcgaaccg ctcaccgcgg ccgctatcga
      481 agcgaagttc ttcgctaacg cggcgtacgg cggctggacc cacgcgcaag ccgcccgcga
      541 aacagtgcga agcctgttcg atggcccggt tcgccttaga acattatcgt cgtagtcaca
      601 cgtagcctag cgcaaacggt aacaaccgct cggatcgatg ccgaatgtgc gcgcgccgat
      661 ggtgatatcg cgcaggtggt ggtcccagaa cgtgagcact ttaacgacaa tcgggcgaat
      721 tgttgcgata agcgcctttg cgcgtgatga aatagagaag acgtcgcgct gccaggccgg
      781 atgatcgccc ggcaatgaca gtgcgacgtc tcccgcatcc atatcggcgc gcattgcggc
      841 gaccgcgcta aaggcgagcg gatcgaggcc cgcgcgttgg gccgaaaggg cgtcgttcat
      901 gccggcgtca gttcgcggcg caagcgcccg atggcgagca agtgcagttg cgatgcgcgc
      961 tgcggtgaga cgccgagttg gtcgctgagc gtgcgcagcg agtgattatc gtaataatga
     1021 tcgacgatga gtttgcgctg acgatgcggc agcgtggcga ttgcggcccg aatacgcgtg
     1081 cggtcggcgg ctgctgtgac gatgacttgc gggtcgccgc cggcagcaat ctctaatcgc
     1141 tcgccgcccg gaaacggcgc atccagcgac agcggcgttc cgcgataggc ttcggctcgc
     1201 gcccgctcca agcccggcac gcgctcgttc atttcgcgtg tcgccggaag tgcgccgcgc
     1261 tcggtcgcga ggttatagcg ctcgcgttcg gcttgccgaa tcgtccggcg aacgcgttcg
     1321 ctcaccggat ccaagcgccg gataccgttg agcatggcgc cggcgatgat ccgccgcgcg
     1381 tactgctcga gtgcgatacc ataacttgga tcgaacgagt caacggcgcg aattaaacca
     1441 acgctaccgt cacccacgag atcgtcggga tccgtgccgc cgacgatgcg tccgatacgc
     1501 cgggcgattt tttgcacgag cggcagcaat tcacggatgc tctgttcgcg gtcgatcatt
     1561 tgtccggcct cgcgaacaga ctctgcgcga tcgaaccggt cgcaagatcg ccgaacggcc
     1621 caagcgatgc cgccagcggc ttgagaatat cggcaaacac aacggccgca agcgcgttct
     1681 gcacccggcg cgcgtcatct attgcgcccg gaacgtcagc tgcggtggag gttgtttgcg
     1741 atccgcaaca tttcatcggc ggcctgcact cctttcgcgt tcgcttcgta cgcacgttgt
     1801 gcagagagaa tctgcatcat ggattcaacg atcgacacgt ttgatttttc gagcatgccg
     1861 aactcgatcg acggatgacc gtcacctccg gcggccagct tatgcgccgg cccggactcg
     1921 cgcgttgcgg caaacatcgt tccgccaagt ccgcgtaagt gttcgggcgc gtaaaacagc
     1981 gccaggtcga ttcggccagc ggcctggtgc gttttgctcg cggtgtcaat aaagacg
//
LOCUS       DATGBK010000214         2732 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_95196, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000214 DATGBK010000000
VERSION     DATGBK010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2732
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95196"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..897
                     /locus_tag="VKJ77_03185"
     CDS             115..897
                     /locus_tag="VKJ77_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011661329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC44309.1"
                     /translation="MSSIGSIGSIVRAVDVRKSYGDFKALQGITLDIPKGEVLCVIGP
                     SGSGKSTFLRCINQLEEINDGALWVNGERVGYRRVGNKLHALSEKQVARQRLATGMVF
                     QRFNLFPHKTVLENVIEGPVQVLKRRRSEAIEEARALLERVGLAHKCDAFPVELSGGQ
                     QQRVAIARALAMHPQLMLFDEPTSALDPELVGEVLAVMRDLAKSGMTMIVVTHELGFA
                     REVANRIVFMDQGQVVESGTPEQVLSNPQHRRTQDFISAVLS"
     gene            960..1799
                     /locus_tag="VKJ77_03190"
     CDS             960..1799
                     /locus_tag="VKJ77_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006751119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44310.1"
                     /translation="MNVSLRFRQLAALVTGAMALHMPLAHAGTPPSIGKSTLVAAIVP
                     NYPPFEYKDPATDKLMGFDVDLGVAIAAKLGVKLQWEETGFDQMMSALTTHRVDVILS
                     GMTDLPSRREAVNFLDYVTGGPQFYTVKARVGEFASMDALCGKTVGASRRTSWPDDIA
                     TWSNEHCVKAGKKPVNVSGTNGSADARVQLRQGRIDAAVQGGETLPYQNSVEENAYAP
                     IGKPFLSQYNGIGMAKGNAALNAGLTEALNQLIADGTYQKILVKWGLQEHAVQKALID
                     ASN"
     gene            1786..2715
                     /locus_tag="VKJ77_03195"
     CDS             1786..2715
                     /locus_tag="VKJ77_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012372491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase"
                     /protein_id="HMC44311.1"
                     /translation="MPVTDINQATPRWPEGKRSCVALAFDLDGPTGDAMLDGSIWSNP
                     SYFTLGSYGPWRALGRLLDMLDDRHAPATFFVPAWVVENWPEQCAAIVARGHEIGYHG
                     YKHEAFWTLDADGQRAVMERSAQVFDKYLGMRPVGFRTPSGDWGPDTIRVLMEAGVRY
                     SSSMRGDDRPYLLHAPGMAEPMVEIPGRWEMDDYASLAYHRNPNFPASLDRIASYDTT
                     LDNWRREFDGSHRDGLCLTTLFHPKVSGKPGRIALLESLIDHMHAQGGVWFATCRDVA
                     QWWRDNHSDNHGDANGDTNGDTHASPTPQEAPR"
BASE COUNT          538 a          780 c          881 g          533 t
ORIGIN      
        1 ggtggtgacg gtgttgtcgt tcatgcagtc gcgggtggag cggttttacg cacgcggcgc
       61 gggtcgtccg tcgggccggc aatgaacccg gtgactgaaa aggaaacact ccccatgagt
      121 tcgatcggtt caatcggttc aatcgttcgt gccgtcgacg tgcgcaaatc ctacggcgat
      181 ttcaaggcgc tgcaaggcat cacgctcgac atcccgaaag gcgaagtgct gtgcgtgatc
      241 ggaccatcag gttcaggtaa gagcacgttc ttgcgctgca tcaaccagct tgaagagatc
      301 aacgatggcg cgttgtgggt caacggcgaa cgagtagggt accggcgcgt gggcaacaag
      361 ctgcatgcgt tgtcggagaa gcaggtcgcg cgtcagcggc tggcgaccgg catggtgttc
      421 cagcgcttca acctgtttcc ccacaagacc gtgctggaga atgtgattga aggaccggtg
      481 caggtgctca agcggcgtcg ctcggaggcg attgaagaag cccgtgcgct gcttgaacgc
      541 gtcggtcttg ctcacaagtg cgatgcgttt ccggtggaac tgtcgggtgg gcagcaacag
      601 cgcgtggcca ttgcacgggc gcttgccatg catccgcaac tcatgctctt cgatgaaccc
      661 acctccgcgc ttgacccgga actggttggc gaagtgctcg ccgtaatgcg cgatctcgcc
      721 aagagcggca tgacgatgat cgtcgtcacg catgagcttg gattcgcccg cgaagtggcg
      781 aatcgcatcg tgttcatgga tcaggggcag gtggtggaga gcggcacacc ggaacaggtg
      841 ttgtcgaacc ctcagcatcg acgcacgcag gatttcatat ccgccgtgct gtcctgattt
      901 ttatttgtgg ttccagcgcc gctggaaccc ggtctgactt ttatcttcag cgagtttcca
      961 tgaatgtttc ccttcgcttt cgccagcttg ccgcgcttgt aacaggcgcg atggcgttgc
     1021 acatgcctct ggcgcacgcc gggacaccac cgtctatcgg caagagcacg ctggttgcgg
     1081 ccatcgtgcc gaactatccg ccgttcgaat acaaggaccc ggccacagac aagctgatgg
     1141 gtttcgacgt tgacctgggc gttgcgattg ccgcgaagct tggcgtcaaa ctgcagtggg
     1201 aagagacagg cttcgaccag atgatgagtg cactgaccac acatcgtgtg gatgtgatcc
     1261 tgtcaggcat gaccgacctg ccgtcacgcc gtgaggcagt gaactttctc gactacgtca
     1321 cgggcggtcc gcagttctac accgtcaagg cgcgtgtcgg cgaattcgcc agcatggacg
     1381 cgttgtgcgg caagacggtg ggcgcgagcc gccgtacgtc gtggcccgac gacatcgcga
     1441 cctggagcaa tgagcattgc gtgaaggcgg gtaagaagcc agtcaatgtg agcggcacga
     1501 acggctcggc ggatgcgcgc gtgcagttgc gccagggccg tatcgacgcc gcggtgcaag
     1561 gcggtgaaac gctgccgtat cagaactcgg tggaggagaa cgcgtacgcg ccgatcggca
     1621 aaccattcct gtctcagtac aacggcattg gcatggcgaa gggcaatgcg gcgctgaatg
     1681 cgggactgac ggaagcgctc aaccagctta ttgctgatgg cacatatcag aagatccttg
     1741 tgaagtgggg tctgcaggaa cacgcggttc aaaaggcgct gatcgatgcc agtaactgac
     1801 attaaccaag ctacaccgcg ctggcctgag gggaagcgct catgcgtcgc gctggctttc
     1861 gacctcgatg gtccgaccgg cgacgcgatg ctcgacggct cgatctggag caatccttcg
     1921 tacttcacgc tgggcagcta tggtccgtgg cgcgcactag gacggttgct cgacatgctc
     1981 gacgaccgcc acgcgccggc cacgttcttc gtgcctgcct gggtcgttga aaactggccg
     2041 gagcagtgcg cggcgatcgt tgcgcgcggt cacgagatcg gctaccacgg ctacaaacac
     2101 gaagcgttct ggacacttga cgccgatggc caacgcgcag tgatggagcg ctcggcgcaa
     2161 gtgttcgaca aatacctcgg catgcgcccg gtcggttttc gcacgccgtc gggcgactgg
     2221 gggccggaca cgatccgcgt attgatggaa gcgggcgtac ggtattcgag ttccatgcgt
     2281 ggcgacgacc gtccgtatct gctgcacgca ccgggtatgg ccgagccgat ggtcgagatt
     2341 cccggccgct gggagatgga cgactacgcg tcgctcgcgt atcaccgcaa tccgaatttc
     2401 ccggcgagcc tggatcgcat agcgagctac gacacgacgc tcgacaactg gcggcgcgag
     2461 ttcgatggct cacatcgcga cggcctttgc ctgacgacgc tgttccatcc gaaggtgtcg
     2521 ggcaagccag gcaggatcgc gttgctggaa agcctgatcg atcatatgca tgcacaaggc
     2581 ggcgtgtggt tcgccacatg tcgcgacgtc gcgcaatggt ggcgtgacaa tcacagtgac
     2641 aatcacggtg atgcgaacgg tgataccaac ggtgataccc atgcctcacc gactccgcag
     2701 gaagctccca gatgaactct ttacgctggc cg
//
LOCUS       DATGBK010000215         1672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_118356, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000215 DATGBK010000000
VERSION     DATGBK010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118356"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(353..1264)
                     /locus_tag="VKJ77_03200"
     CDS             complement(353..1264)
                     /locus_tag="VKJ77_03200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014007272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44312.1"
                     /translation="MIDLRGIDLNLLVSLDALLAESNVTRAAQRLHLTQPAVSTQLAR
                     LRQIFGDPLLIPAETGRGMTRSTRALELMEPLHLALKNLEAVVRHQSSFDPHTDHRSF
                     IIAANDNATAVLGQRLMEQLPTLAGPGVRIAFVVADQPSMATRLERGEIDLLLGSERM
                     VPASMKARKLFDERFVVVQRKGHPRGTAPLDLDTYCALNHVLVSTSGGSFHGFMDEHL
                     DALGRKRRVVLSVQHFTLVPELLARTDYVSTLPARFAERYRERLDIFELPFEARGFTL
                     FAAWPPRSQADPAHVWLRDTIAALASM"
     gene            1355..>1672
                     /locus_tag="VKJ77_03205"
     CDS             1355..>1672
                     /locus_tag="VKJ77_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019448801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HMC44313.1"
                     /translation="MKAWMLDEPGTPLALRDVAQPAPRRNAVAVRMEAVPLLSYTRAH
                     VEGKLPYAYPPGPFSPGTNGVGRVEAVGEGVMSFRVGQRVAVNPYWIANEAVREPAQA
                     LIAL"
BASE COUNT          355 a          484 c          524 g          309 t
ORIGIN      
        1 cggctatgtc agtgatcgcg aaagcgacgt aaaacagggt gcagaagaca agcgtgcgca
       61 tcagcgaggt atggtttgca atccgatgat ggcgctgaaa ctctttttcc actgacgcgt
      121 cttcgaactc ggaccatagg cggtcaagtt tgaaattcgt ctctgcgtcg aagcgtggaa
      181 tttcgattgg ttctgccatc gctcgccatg tctgatgtcg ccgttggggc aacatgataa
      241 gtcattttgg gtgtcggacc cggggcgcct gggtttcgaa gaaacgccat gttgggggca
      301 taagcgggca cccgtaggtc gaaagcgcgg tgcgaagagg acgagtctga ccttacatcg
      361 aggccagcgc cgctatcgtg tcacgcaacc acacgtgcgc cggatcggcc tgactgcgag
      421 gcggccacgc tgcgaacagc gtaaaaccgc gtgcctcgaa cggtagttcg aagatatcga
      481 ggcgttcccg ataacgctcg gcaaagcggg cgggcagcgt cgaaacatag tccgtgcgtg
      541 ccagcaattc gggcacgagc gtgaaatgct gcaccgacaa tacgacccgg cgcttacgtc
      601 ccagcgcgtc caggtgttcg tccatgaagc catgaaaact gcccccgctc gtcgacacca
      661 gcacgtggtt caacgcgcaa tacgtatcga gatcgagcgg agcagtaccg cgtggatgcc
      721 ccttgcgctg gacgacgaca aaacgctcat cgaagagttt gcgggctttc atcgacgctg
      781 ggaccatccg ctccgagccc agcagcaaat cgatttcacc gcgctcaagg cgggtcgcca
      841 tcgacggctg gtcggctacg acaaacgcga tccgcacgcc tggccccgcc agcgtcggca
      901 actgctccat gagccgctgg ccgagcaccg ccgtggcgtt gtcatttgcg gcaatgataa
      961 agctgcggtg gtccgtatgc ggatcgaacg aggattgatg gcgtacgacc gcttcgagat
     1021 tcttcaaggc cagatgcagc ggctccatca gctcgagcgc ccgcgtgctg cgcgtcatgc
     1081 cgcggccggt ctcggcggga atcagcagcg gatcgccgaa gatctgccgc agccgcgcaa
     1141 gctgcgtcga gacagccggt tgcgtcagat gcagccgttg cgccgcgcgc gtgacattcg
     1201 attcggcgag caaggcgtca agcgacacca gcaaattcaa gtcgataccg cgaagatcaa
     1261 tcatgttgat aggtcgcatt ccattaattg atttcaagaa tacgtacccg gaacctagag
     1321 ttcaactgtc caaccaatcc caaggggaat acagatgaaa gcctggatgc tcgatgaacc
     1381 cggtacgccg ctggcgctac gcgacgttgc acaacctgcg ccacgccgca acgcagtggc
     1441 ggtgcggatg gaagcggtgc cgctgcttag ctacacgcgc gctcacgttg aaggcaagtt
     1501 gccgtatgcg tatccgccgg gaccgttttc gccggggacc aatggcgtcg gccgggtgga
     1561 agcagtcggc gagggtgtga tgtcgtttcg cgtgggtcaa cgcgttgcag tgaacccgta
     1621 ctggattgcg aacgaagcgg tacgcgaacc ggcgcaagcg ctgatcgcgt tg
//
LOCUS       DATGBK010000216         3054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_303112, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000216 DATGBK010000000
VERSION     DATGBK010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303112"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..353)
                     /locus_tag="VKJ77_03210"
     CDS             complement(<1..353)
                     /locus_tag="VKJ77_03210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015015732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44314.1"
                     /translation="MTQSTSPTAGRATFSDRLPSLADIGPLAALVIACAFFIWQSNRF
                     LSIQNLSLILQQTMVVAVIAIGQTLIVLTGGIDLSCGMLMAFGSIVMTKFAVTLGVPP
                     VLAIICGVAASTLFG"
     gene            complement(478..1473)
                     /locus_tag="VKJ77_03215"
     CDS             complement(478..1473)
                     /locus_tag="VKJ77_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HMC44315.1"
                     /translation="MKNLRRAVARASFLGLAVASLVSSGAAMAADQIAIGLITKTDTN
                     PFFVKMKQGAEEAAAKGGVKLISAAGKFDGDNATQVTAVENMMTAGVKAILITPSDTK
                     AIVPTLKKARAAGILVIALDTPTDPQDATDALFATDNFKAGVLIGEYAKAAFAGKPAK
                     IATLDLAPGVTVGVLRHNGFLQGFGVKEGDPSVVCSQDTRGDQSKGQTAMENCLQKEP
                     GINLVYTINEPAAAGAYRALKAAGKDKDVMIVSIDGGCEGVRNVKAGSFAATSQQYPL
                     VMAAQGVQAGIEYAKTGKKATGYHDTGVTLISDKPVSGIAAKDTKFGLDNCWGNK"
     gene            1817..2026
                     /locus_tag="VKJ77_03220"
     CDS             1817..2026
                     /locus_tag="VKJ77_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44316.1"
                     /translation="MSALEALHAIVTDEDSPQIIRDHIVDSLQFALRNQPGFFTTKEV
                     QWLSQWDDTRIPIAATKILNEMKSA"
     gene            complement(2131..3030)
                     /locus_tag="VKJ77_03225"
                     /pseudo
     CDS             complement(2131..3030)
                     /locus_tag="VKJ77_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353755.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
BASE COUNT          659 a          906 c          839 g          650 t
ORIGIN      
        1 aatccgaata atgtgcttgc cgccacgcca cagatgatgg caagcacggg aggcacgccc
       61 aacgtgacgg cgaacttcgt catcacgata gaaccgaatg ccatcaacat gccgcacgac
      121 aaatcaatcc cgccggtcag cacgatcagc gtctgcccga tcgcaatcac cgctacgacc
      181 atggtctgct gaaggatcag cgagagattt tgtatcgata aaaaccggtt gctttgccag
      241 atgaagaaag cgcacgcgat tacgagtgcc gctagcggac cgatatcggc aagcgacggc
      301 agacgatcag agaacgtcgc gcggccagcc gtgggagagg tggattgcgt catgactcgg
      361 gacctcgaca gcaagttcga aaaaatgtgc cgctcgcgcg acccggactt gaaaacacct
      421 tgaggctcaa gtccgggccg cgagtttaaa cgcgggttca aatgcggcgc gacggcttta
      481 cttgttgccc cagcagttat ccagcccgaa cttcgtgtcc ttggccgcga tgccggacac
      541 gggtttgtcg ctgatcaacg tgacgccggt gtcgtgatag ccggtcgcct tcttacccgt
      601 cttcgcgtat tcgatccccg cctgcacgcc ttgcgctgcc atcacgagcg ggtattgctg
      661 cgaggtggcg gcgaagctgc cggctttcac gttgcgcacg ccttcacagc cgccgtcaat
      721 ggacacgatc atcacgtcct tgtccttgcc cgcagctttg agcgcgcgat acgcaccggc
      781 cgccgcgggt tcgttgatcg tataaacgag gttgatgccc ggctcctttt gcaggcagtt
      841 ttccatcgct gtctggccct tcgactggtc cccgcgggtg tcttggctgc acacgaccga
      901 tgggtcgccc tctttcacgc cgaagccctg caggaagccg ttgtgacgca ggacaccgac
      961 ggtcacgccg ggcgccaggt cgagcgtggc gatcttcgcg ggcttgccgg cgaacgcggc
     1021 ttttgcgtat tcgccgatca ggacgccggc cttgaagtta tcggtggcga acagcgcgtc
     1081 ggtggcatct tgcggatcgg tcggcgtgtc gagtgcgatc acgagaatgc ctgccgcgcg
     1141 cgctttcttg agcgtcggaa caatagcctt ggtatcgctc ggcgtgatga ggatggcttt
     1201 cacaccagcc gtcatcatgt tctcgaccgc agtcacctgg gttgcgttgt cgccgtcgaa
     1261 cttgccggct gcggagatca gcttgacccc gcctttcgcg gcggcttctt cggcgccctg
     1321 tttcatcttg acgaagaacg ggttggtatc ggtcttggtg atcaggccga tcgcgatctg
     1381 gtcagccgcc attgccgcgc ctgaacttac cagcgatgca actgcaagtc cgaggaagga
     1441 cgcacgtgcg acagcacgcc gaagattttt catgtctcgc tccataggtt tttgttcgcc
     1501 cgtggcttcg agaggaagcg caccggacgc gttcgccgac taaatcaatt tactttattt
     1561 agtacagcag cgacgtggag acaagtcaag aaaatgaagc gaaacccaaa cggtgcagtg
     1621 cagcatgact ccgattaaat cgctttggac atcaataggg gctgcgcaag cggcgattgt
     1681 tgcgccgcgt ctacgtaaaa acactgacgg gccgaaaacg gcttaaaaaa gagttgaatt
     1741 gaattgtttt ccgacttttt atcgagttat ggtttaccag catttttgcc aacccctcat
     1801 cctggtctcc cgcaccatga gcgcactcga agcccttcac gcgatcgtca ccgacgaaga
     1861 ttcgccccag atcatccgcg atcacattgt ggattcgctg cagtttgcat tgcgcaacca
     1921 gcccggtttt ttcacgacga aagaagtgca atggctctcg caatgggatg acacgcgtat
     1981 tcccattgca gcgacaaaga tcttgaacga aatgaaatca gcttgaatgg ttcgttcgcg
     2041 ccggtggacg gggtttgggg ttctggcggt cgttgagcgc gtgctggcgg taatagcttt
     2101 agcggtcagg gttgatgacc gtgatcggcc ttaatgcaaa ccagccttcg ccgccacatc
     2161 gaacgtaaag gccagcgtct tatccggcac gacaatactg tcgataaact gcaccacttc
     2221 taaatccttc acaaaactcg ccgccgacga agccgctaga atcgcgccgc tttcctgcgg
     2281 cttggcaata agatatccct gcacgtaatc cacgccaatt tccttcagcg cgcgcagcgt
     2341 atccacatcc tcaacccact ccgcgacgct gcgcattccc agattgcgag cgagcgcgac
     2401 aatagcttcg acaatggcaa tatcagccgg atgcgcacac atcgtccgaa taaactcgcc
     2461 gtcgatcttg agtgcatcag cggaaagatc cttgagatat ttaaacgatg tataccccgc
     2521 gccgaaatcg tcgagtgcga tcttgccgcc catctcatga acccgcgcaa taaagcgctg
     2581 tgtattgccg agatcatgca acgcgacgct ctcggtaatc tcgagacaaa gataaggcac
     2641 gatatgccgg aagcgcgcga acaaggcgaa gacgtcttcc atgaactgct cgtcattcag
     2701 cgaaccacca ctgagattga cgcaaatgaa acgcgtattg gtgagcgacg cctcatgctt
     2761 ctcgatccac tcgagcaacg tggtgatcac ccatttatca atagctgcga tattgccgga
     2821 ttcctccgcc gccacgatca ccttgccggc aggcagcgtt gcgccgtcgg gcgcgcgcat
     2881 gcgcagcagc acctcgaaat taagcgactc agtaggcgca gacagcgaca tgatcggttg
     2941 catcacgagg aataggcccg gaggcaatcg attgcgcccc agtgtttcaa ccagcttcaa
     3001 ttcctctgcc cgctcctcga acgccgccga tcatgtcgct gtctgcgcct actg
//
LOCUS       DATGBK010000217         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_95231, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000217 DATGBK010000000
VERSION     DATGBK010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95231"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..1175)
                     /locus_tag="VKJ77_03230"
     CDS             complement(114..1175)
                     /locus_tag="VKJ77_03230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HMC44317.1"
                     /translation="MPNLFDPLKVGAFNLRNRVIMAPLTRQRAGVERVPNALMAQYYA
                     DRAAAGMILSEATSVTPQGVGYAETPGIWSDEQVEGWKLVTKAVHDAGGTILLQLWHV
                     GRISDPIFLNGDLPVAPSAIAAQGNVSLVRPQRAFVTPRALELDEIQGVVAAFRKGAE
                     NAKLAGFDGVEVHGANGYLLDQFLQDSTNQRTDIYGGSIENRARLLLEVVDAAIDVWG
                     ADRVGMHLAPRADSHSMGDSDRAATFGYVARELGKRKIAFIAARERVGEDSIGPQLKR
                     DFGGVYIANEKFTKESAQAALDRGDADAVAWGQLFIANPDLVKRFESDAALNAPIPET
                     FYARGTEGYTDYPTLETMD"
     gene            complement(1254..1550)
                     /locus_tag="VKJ77_03235"
     CDS             complement(1254..1550)
                     /locus_tag="VKJ77_03235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018314104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HMC44318.1"
                     /translation="MDIDAIHKALANPVRREILAWLKEPEIYFPEQQFPLVNGVCAGQ
                     IDARCDMSQSTVSAHLGTLHKAGLVTSKRVGQWIFFRRDEAVIQAFLDQLHKGL"
     gene            complement(1672..>2038)
                     /locus_tag="VKJ77_03240"
     CDS             complement(1672..>2038)
                     /locus_tag="VKJ77_03240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HMC44319.1"
                     /translation="VVTEQVSDDFLAYLQSIGVSYVFGGKTDIDLADVVNTLERELGV
                     KKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSEHPSSFEVPMDAWKSPAYLTLA
                     SVEQVAPDAVWLRYTRKTN"
BASE COUNT          442 a          623 c          569 g          404 t
ORIGIN      
        1 gagataccta caggcctgct tgtcctgagc tttcatccga tggcgaaccc ggtaaaaaaa
       61 cagccggtga ctccgtaaga gtcaccggct gcggcaagcc aaaaccgaaa cgcttagtcc
      121 atggtctcga gtgtcggata gtccgtgtag ccttcggtac cgcgagcgta gaacgtctcg
      181 gggatcggcg cattcaacgc ggcgtcgctt tcgaagcgtt tcacgagatc cggattggcg
      241 atgaacaact gcccccacgc gacggcatcg gcgtcaccac ggtcgagcgc cgcctgagcg
      301 ctttccttgg tgaacttctc gttagcgata taaacaccgc cgaagtcgcg cttcaactgc
      361 ggtccgatcg agtcttcgcc cacgcgttca cgtgcggcaa tgaacgcgat cttgcgcttg
      421 cccaactcgc gtgcaacgta accgaaggta gcggcgcgat cactgtcgcc catgctgtgc
      481 gaatcagcgc gcggcgcgag gtgcatgcca acccggtcag cgccccacac gtcaatagcc
      541 gcgtcgacca cttcgagcag caggcgtgcg cgattttcga tcgagccacc gtagatgtcc
      601 gtgcgttggt tcgtgctgtc ctggaggaac tggtcgagca gataaccgtt cgcgccgtgc
      661 acttcaacgc catcgaaacc ggcaagcttc gcgttttcgg cacccttgcg gaatgctgcc
      721 accacccctt gaatttcgtc gagttcgagt gcgcgcggcg tcacgaatgc gcgctgcggc
      781 cgcacaaggc tcacattgcc ttgcgccgca attgcgctcg gcgctacggg caggtcgccg
      841 ttgaggaaga tcgggtccga gatccggccg acgtgccaca gttgcagcag gatcgtgccg
      901 cctgcgtcgt ggaccgcttt cgtcacgagc ttccagcctt cgacctgctc gtccgaccag
      961 atccccggcg tttcagcgta acccacgccc tggggcgtga ccgaagtcgc ttcgctcagg
     1021 atcatgccgg ctgcggcgcg atcagcgtag tactgcgcca tcaacgcgtt gggcacacgt
     1081 tcaacacctg cgcgctgacg cgtgagcggc gccatgatga cgcggttacg aagattaaag
     1141 gcaccaactt tgagcgggtc gaaaagattc ggcattttgg aagtattcct aaataggttg
     1201 taatgaaaac cagcaaccag aacacggtga acaagctgac gcgtcagggg ccgtcagagc
     1261 cctttatgaa gctgatcgag aaacgcctga atgaccgctt cgtcgcgcct gaaaaatatc
     1321 cactgcccca cccgcttgga ggtcaccaaa cccgctttgt gaagcgtgcc caagtgagcc
     1381 gacacagtgg attgagacat atcgcagcgc gcgtcaatct gaccggcgca tacgccattc
     1441 acgagcggaa actgctgctc agggaagtag atctctggct ccttgagcca cgcgagaatc
     1501 tcgcggcgca ccggattggc cagggccttg tgaatggcgt cgatatccat gaaaaacggc
     1561 tttaagtaga atcgcgatga aacgaactat atttcgtaaa aatacgatat gcaagcaatc
     1621 cactattgcc gataggggta atcccgagtc ccaactcttg cccttttctc ttcagttcgt
     1681 tttgcgcgta tagcgaagcc agaccgcgtc gggagcgact tgctcgaccg atgcaagggt
     1741 cagatacgcc ggacttttcc atgcgtccat tggaacttcg aatgacgacg gatgttcgct
     1801 gcggccatcc acgagcggca ggatcagcac gctgacctca tccaccagac cggcattcac
     1861 gaacgcgccg ctcacgtgcg agccgccttc cacgatcagc ttcttcacgc ccaactcgcg
     1921 ttcaagcgta ttgactacat cagccagatc gatgtcggtt ttgccgccga aaacgtagga
     1981 cacaccaatc gactgaagat aggcgaggaa gtcgtcggaa acctgctccg tcaccact
//
LOCUS       DATGBK010000218         2584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_257065, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000218 DATGBK010000000
VERSION     DATGBK010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257065"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            213..2078
                     /locus_tag="VKJ77_03245"
     CDS             213..2078
                     /locus_tag="VKJ77_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HMC44320.1"
                     /translation="MPLPTAPVKLGNLLPSEEYKAKARPARTSKKQASDGDLAETETD
                     FGASVGGSRPAAANTANTLRAIASETLANAAKGSAVEASDAAPAARTRRAKQTAALLQ
                     PAAAPAEQVETTPAVARTPVEARAPSRSEVPVAPVTAAAQPRGQQKRRQRGQPENEIG
                     KLFVLDTNVLMHDPSSLFRFEEHDVYLPMMTLEELDNHKKGMSEVARNARQVSRTLDA
                     LVAHVGEMSAGLPLSALGNRDATGRLYFQTTLTDIEPVEGLPVGKADNQILGVVRALQ
                     KERTDRQVVLVSKDINMRIKAHALGLPAEDYFNDQVLEDKDLLYSGVRALPSDFWTKH
                     AKGMESWQDTKTGTTYYRVTGPQCASMLVNEFVYFEPQNGEPSFYGIVRELNGKTALL
                     QTLRDYSHHKNNVWGITSRNREQNFALNLLMNPDVDFVTLLGQAGTGKTLMALAAGLA
                     QVLDDKRYNEIIVTRATVPVGEDIGFLPGTEEEKMQPWMGAFDDNLEVLQKTDDAAGE
                     WGRAATQELIRSRLKVKSMNFMRGRTFVDKYVIIDEAQNLTPKQMKTLVTRAGPGTKI
                     VCLGNIAQIDTPYLTEGSSGLTYVVDRFKGWTHSGHVTLARGERSRLADYASEIL"
     gene            2303..>2584
                     /locus_tag="VKJ77_03250"
     CDS             2303..>2584
                     /locus_tag="VKJ77_03250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004544392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HMC44321.1"
                     /translation="MRRLWSLLLLTLLVAACSSAPTRVSRAPSASNATASNRTFATPS
                     GFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPEAGFDCSGLVRYVVDR"
BASE COUNT          547 a          793 c          773 g          471 t
ORIGIN      
        1 cgtccgtgcg tttcatcccc gttttcttca ggacgcaact tccaaggagc cgatcgaaat
       61 ctaggcgaac cggcgttttc gaaaccgaag cgcgtctccg ggcgcaaact gcatcgacgt
      121 ccggccttct ggcctgaaga cctgaacgtc ggctcacgca ggatgcgaca ggcgacgcac
      181 gacatacgat ccgaatccta tcgaggaaaa ccatgccttt gcctaccgca cccgtcaagc
      241 tcggcaacct cctgccgtct gaagaataca aagccaaagc ccggcctgcc cgaacatcga
      301 aaaagcaggc aagcgacggc gatctggctg aaaccgagac cgactttggc gcaagcgtcg
      361 gcggttcacg gcctgccgcc gcgaacaccg ccaatacgct gcgcgctata gcaagcgaga
      421 cattggcgaa cgcggccaaa ggctcagcag tagaagcctc tgatgcagcg cccgccgcgc
      481 gtacgcgccg cgcgaaacaa accgcggcat tgctgcaacc tgctgccgca ccggccgaac
      541 aggtcgaaac cacaccggct gtcgcccgca cgccggtcga ggcgcgcgcg ccttcgcgtt
      601 ccgaagtacc ggtcgcgccc gtaactgcgg ctgctcaacc gcgtggccag caaaaacgcc
      661 gccagcgtgg ccagccggaa aacgagatcg gcaagctgtt cgtgctcgac acgaacgtgc
      721 tgatgcacga tccgtcatcg ctgttccggt tcgaggaaca cgacgtctat ctgccgatga
      781 tgacgctcga ggaactcgac aaccacaaga agggcatgtc ggaagtggcg cgcaatgcgc
      841 gccaggtgag tcgcacgctc gatgcattgg tggcgcacgt cggcgagatg tccgccgggt
      901 tgccgttgtc cgcgctgggc aatcgcgacg ccacgggacg cctgtacttc cagaccacgc
      961 tgaccgacat tgagccggtt gaaggcctgc cggtcggcaa ggccgacaac cagattctcg
     1021 gcgtggttcg cgcgctgcag aaggagcgca cggatcgcca ggttgtgctg gtgtcgaaag
     1081 acatcaacat gcgcatcaag gcccacgcgc tcggcctgcc cgctgaagat tatttcaacg
     1141 accaggtgct ggaagacaag gacctgctct attccggcgt tcgcgcgttg ccttcggact
     1201 tctggacgaa gcacgcgaag ggcatggaaa gctggcagga caccaagacg ggcaccacgt
     1261 attaccgggt gaccggtccg caatgcgcgt ccatgctggt gaatgagttt gtttatttcg
     1321 aaccgcagaa cggcgaaccg tcgttctacg gcatcgtgcg cgagttgaat ggcaagacag
     1381 cgctgctgca aacgctgcgc gattacagcc atcacaagaa caacgtatgg ggcattacgt
     1441 cgcgcaatcg cgagcagaat ttcgcgttga acctgctgat gaaccccgac gtggatttcg
     1501 tcacgctgct gggtcaggct ggtaccggca agaccttgat ggcgctggct gccggcctcg
     1561 cgcaagtgct cgacgacaag cgctataacg agatcatcgt gacgcgtgcg acggttccgg
     1621 ttggcgaaga catcggcttc ttgccgggta cggaagagga aaagatgcag ccgtggatgg
     1681 gcgcgttcga cgacaacctc gaagtcctgc aaaagaccga cgacgccgcc ggcgaatggg
     1741 gccgtgccgc cacgcaggaa ctgatccggt cgcgcctgaa ggtgaagagc atgaacttca
     1801 tgcgcggccg gaccttcgtg gacaaatacg tgatcatcga cgaggcgcag aatttaacgc
     1861 ccaagcagat gaaaacgctc gtcacgcgcg ccggtccggg cacgaagatc gtgtgtctgg
     1921 gcaatatcgc gcagatcgac acgccgtatc tgacggaagg cagttcgggc ctgacgtacg
     1981 tggtcgaccg cttcaagggc tggacgcata gtggtcacgt cacgctcgcg cgcggcgaac
     2041 ggtcgagatt ggcggattac gcgtccgaga ttctttaaat tttcgacacg ctttgaaagc
     2101 ccggcaagca tcgcttgccg ggcttttttg cgtcctttta gcgggtcttg gacctaaaat
     2161 cacgttcctc cgaagcaaca cttacagcgt aaacctcaag tgacttatca agaaaacttg
     2221 cccgtgcctc gtctgacggg ctagtatcgc gagaccgcca tcacggcgag cgctcatctt
     2281 caccctcggc tcgccctttc gaatgcgtcg actctggtca ctgctgctcc ttaccctcct
     2341 cgttgccgcg tgctccagcg ctccgacgcg ggtatcgcgt gcgccgtctg catcgaacgc
     2401 aacagcttct aatcgcacct tcgccactcc ctccggcttc ccgaatttcg ttgatcacag
     2461 cgtcggacgc gaggaaattt ccattcaggc gatgtcgctc gtgggcgtgc cgtatagatg
     2521 gggaggcaat acgccagagg caggtttcga ttgcagcggg cttgtacgct atgtggtgga
     2581 tcgg
//
LOCUS       DATGBK010000219         2161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_280143, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000219 DATGBK010000000
VERSION     DATGBK010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280143"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /locus_tag="VKJ77_03255"
     CDS             <1..544
                     /locus_tag="VKJ77_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phenylacetate--CoA ligase"
                     /protein_id="HMC44322.1"
                     /translation="KDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEALPI
                     VRYRTRDLTRLLPGSARTMRRMEKITGRSDDMMIVRGVNVFPTQIEELLLKQHALAPH
                     YQIVLTKEGPLDVLTLNVEPCPETAPDTGVLDQAKAALAYDIKALIGVSAVIQVLGVN
                     GIERSVGKARRVIDRRKAAS"
     gene            complement(1010..2146)
                     /locus_tag="VKJ77_03260"
     CDS             complement(1010..2146)
                     /locus_tag="VKJ77_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MltA domain-containing protein"
                     /protein_id="HMC44323.1"
                     /translation="MRFTRSLAGLAGWAASITAAVLLASCGGGGAIKSGYLAPPTGAP
                     IITGQRAANRLTAVSWQQVPGWQDDSLLGATAAMRQNCSRLAQQPAWRRACAAALRLD
                     DLDMNAAREFFEAYFTPFQLANTDGTLDGLVTGYYEPLLRGSRTRHGAYQYALYRWPY
                     RFKPGTALPTRGQLESSGVLNGNELVWVDDPIEAFFLQIQGSGQVVMEDGTTMRVGFG
                     GTNNQPYKSIGRELLDRRELTPAQATMQGIKAWAKANPSRVDALLDVNPRFVFFREMP
                     GTETLAAGVGAGPVGALGVPLTPERSIAVDPSSIPLGTPVFLQTTRPLSNAPMNRLVF
                     AQDTGSAIKGGVRADYFWGLGDDAGDLAGRMKQGGRMWLLLPNS"
BASE COUNT          458 a          681 c          644 g          378 t
ORIGIN      
        1 gaaggacggc ccgacgatct gggaagatca tttctatccc gagatcattg atcctgagac
       61 cggcgaggtc ttgccagacg gcgaactggg cgaactcgtg ttcacttcac tgaccaagga
      121 ggcgctgccg atcgtccgtt accggactcg tgatctcacc cggcttttgc cgggcagcgc
      181 gcgaacgatg cgccggatgg aaaaaatcac ggggcgctcg gacgacatga tgatcgtgcg
      241 cggcgtaaat gtttttccaa cgcagattga agagcttctg ctcaaacaac acgcactcgc
      301 accgcattat caaatcgtgc tgacgaagga aggtccgctc gacgtgctca cgctgaatgt
      361 cgaaccctgt cctgaaactg ccccggatac cggtgttctc gatcaggcca aagccgcact
      421 cgcttacgac atcaaagcct tgatcggcgt cagtgcagtg attcaggtgt tgggtgtgaa
      481 cggcatcgag aggtcagtcg gaaaggcgcg gcgcgtgatc gatcggcgga aagcagcgag
      541 ttgattgtgt cagcacagct caaatccggc gcttacggct gaagcggtag ctgcatcggc
      601 acgcccgctt ttgtgcggtc gatcggtgac gcatgatcga ttgtcgcgaa tgtggcggct
      661 gggcggggcg ctgtcgtcgg agctcgtgtt cgaattcagc cgacgctgac cgtgttcgcg
      721 cggctgcatc agttatctcg accagccgaa cgcgaccggc gtaaccggtg taaccggaaa
      781 tcggcggaat cggaaatcag tgggatcgaa gtttcgcaaa gaatccacag aacccgcccc
      841 gtgcgttaga cgtgagaaac acttgaccaa cgccacatct aacgcacgta gcgcgatcag
      901 gcgtagtaaa gaaagacgaa gcacgcggag gaacaaaacc cgctgaacag ccgctaaacg
      961 caaacggctg ctctaccccg gcaacgatct cccaatccaa accacacggt cacgaattcg
     1021 gcagcaacag ccacatcctg ccgccctgct tcatccggcc ggcgagatcc cctgcatcgt
     1081 cgcccaaacc ccagaaatag tccgcacgca cgccgccctt gatcgcgctg ccggtgtcct
     1141 gggcgaacac cagccggttc atcggcgcat tgctcaacgg ccgagtggtc tgcaagaaaa
     1201 ccggcgtgcc gagcgggatg gaggacggat cgacggcgat cgaacgttcg ggcgtaagcg
     1261 gaacacccag cgcgcctacc ggcccggctc ccacgccagc cgccagcgtt tccgttcccg
     1321 gcatctcgcg gaagaacacg aagcgcggat tgacgtcgag caaagcgtcg acacgcgacg
     1381 gattcgcttt cgcccacgcc ttgatacctt gcatcgtcgc ctgtgcaggc gtgagttcac
     1441 gccgatccag caactcacgc ccgatggatt tgtacggctg gttgttcgtc ccgccaaacc
     1501 caacgcgcat tgtggtcccg tcttccatca cgacctgtcc agagccctgg atctgcagga
     1561 agaacgcttc gatagggtcg tcgacccaca ccagttcatt accgttcaac acgcccgaac
     1621 tttcaagctg gccgcgcgtc ggtagcgcgg tgccaggttt gaaccgatac ggccatcgat
     1681 acaacgcgta ttgataagcc ccgtgacgcg tacgcgaacc gcgcaacagc ggctcgtagt
     1741 aaccggtcac gagaccgtcg agcgtgccgt cggtgttggc caactggaat ggcgtgaaat
     1801 acgcctcgaa gaattcgcga gcggcgttca tgtcgagatc gtcgagcctc agcgccgccg
     1861 cgcacgcccg gcgccacgcg ggctgttgcg cgagacggct gcagttctgg cgcatcgcgg
     1921 cagttgcgcc gagcagcgaa tcgtcctgcc agccaggcac ttgctgccag ctcaccgctg
     1981 tcaggcggtt agccgcgcgc tgccccgtga tgatcggcgc accggtcggt ggcgcgagat
     2041 acccggactt gatagcgccg ccgccaccgc acgaagcgag caggacggct gctgtgatcg
     2101 acgccgccca acccgccaat ccggcgagcg agcgagtgaa acgcatacaa tgttcgctct
     2161 t
//
LOCUS       DATGBK010000220         1937 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_187766, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000220 DATGBK010000000
VERSION     DATGBK010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187766"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1451
                     /locus_tag="VKJ77_03265"
     CDS             <1..1451
                     /locus_tag="VKJ77_03265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011853049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HMC44324.1"
                     /translation="TSTGTAAGNAAGAMVEALTAGTALLHITGQIETQFLDQDLAYIH
                     EAPDQLSMLASISKAAFRVRSVETALATVREAVRVAFTAPSGPVSVEIPIDIQAAEIE
                     WPADLAAPHVSTLTHDSARVEQLAQALMRAKRPLLWLGGGTRHARPAVDRLVALGFGV
                     VTSVQGRGVVPEDHSATLGAFNVHPAVESFYKTCDAMLVVGSRLRGNETLKYKLALPQ
                     PLYRIDADACADNRGYKNDMFVHGDSLSILDELATRLEGHLKIDPSFAGDLAAARETA
                     TADVAKGLGPYKRLVESLQRVIGRDYNWVRDVTISNSTWGNRLLKVFEPRAGVHALGG
                     GIGQGMQMAIGAALARPAKKTVCLVGDGGLMVNVGELVTAVQEDANVMIVLMNDQCYG
                     VIRNIQDAQYGGRRMFVDLHQPDFAQFCASFGMTHHRITSLDRAEEIIRQGYEKTGPV
                     MIEVDMVSVGSFATAFAGPPVKKEEPKEPEYA"
     gene            1444..>1937
                     /locus_tag="VKJ77_03270"
     CDS             1444..>1937
                     /locus_tag="VKJ77_03270"
                     /EC_number="1.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195445.1"
                     /note="catalyzes the formation of L-aspartate to
                     iminoaspartate in NAD(+) biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate dehydrogenase"
                     /protein_id="HMC44325.1"
                     /translation="MRDANGHTVPVDVAMIGFGAVGSTVYRAMASDPMVRVSHVIVPS
                     RYADEVRAQVGRDVDVVSSVDALSRRPHFALECAGHGALLDHVVPLLKAGTDCAVASI
                     GALSDEKLLDALSRAADEGESVLTLLSGAIGGVDALAAAREGGLDEVLYTGRKPPSGW
                     LGTPA"
BASE COUNT          333 a          580 c          671 g          353 t
ORIGIN      
        1 ttacatcgac gggaacagcc gccggtaacg cagccggtgc gatggtcgaa gcgctgacgg
       61 caggcacggc gctcctgcat atcaccggcc agatcgagac gcagtttctc gatcaggacc
      121 tggcttacat tcacgaagcg ccggaccagc tctccatgtt ggcatctatt tcgaaggcgg
      181 cgttccgcgt gcgctcggtc gagaccgcgc ttgccaccgt gcgtgaggcc gtgcgggtcg
      241 cgttcaccgc gccgagcggg ccggttagcg tcgagatccc tattgatatc caggccgctg
      301 aaatcgaatg gccggccgat ctcgcggctc ctcatgtgag cacgctcacg catgacagcg
      361 cgcgtgtcga acaactggcg caggcgctga tgcgcgcgaa gcgaccgttg ctgtggctcg
      421 gcggcggcac gcggcatgcg cgtcctgctg tggaccggct cgttgcgctg gggtttggcg
      481 tggtgacgag cgtgcaggga cgcggcgtgg tgcccgagga tcactcggcc acgctcggcg
      541 cgttcaacgt gcacccggcc gtggaaagct tctacaaaac ctgcgacgcg atgcttgtcg
      601 tcggttcgcg tctgcgcggc aatgagacgc tcaagtacaa gctggcgttg ccgcaaccgt
      661 tgtatcggat cgacgccgat gcgtgcgccg acaaccgggg ctacaagaac gacatgttcg
      721 tgcatggcga ttcgctgtcc atcctcgatg aactcgcaac gcgtcttgaa ggccacttga
      781 agatcgatcc gtcattcgcc ggcgatctcg cggccgcgcg cgaaaccgca acagcggatg
      841 tggctaaagg cctgggaccg tacaagcgcc tcgtggaatc gttgcaacgc gtgatcgggc
      901 gcgactacaa ctgggtgcgc gatgtcacga tttccaacag cacgtggggc aatcgccttc
      961 tgaaggtttt cgagccgcgc gcgggcgtgc atgcgcttgg cggtggtatc ggccaaggca
     1021 tgcagatggc gatcggcgca gcgctggcgc gcccggcgaa gaagaccgtg tgtctcgtcg
     1081 gcgacggcgg cttgatggtg aatgtcggcg aactcgtgac ggccgtgcag gaagacgcga
     1141 acgtgatgat cgtgctgatg aacgaccagt gttatggcgt gatccgcaac atccaggacg
     1201 cgcaatacgg cggccggcgc atgttcgtgg atctgcatca gcccgatttt gcacagttct
     1261 gcgcgagctt cggcatgacg catcaccgca ttacctcgct ggatcgcgcc gaagaaatca
     1321 tccgtcaagg ctacgagaaa accggcccgg tgatgatcga agtggacatg gtgtcggtgg
     1381 gctcgtttgc gacggcattc gcgggtccgc cggtcaagaa ggaagagccg aaggagcccg
     1441 aatatgcgtg acgccaacgg ccacaccgta cccgtcgatg tcgcgatgat cggcttcggc
     1501 gcggtcggat cgacggtgta tcgcgcgatg gcgtccgatc caatggtgcg cgtgtcgcat
     1561 gtgatcgtgc cgtcgcgcta cgcggacgag gtgcgcgcgc aagtcggccg ggacgtcgat
     1621 gtcgtgtcgt ccgtcgatgc gctcagccgg cgcccgcact tcgcgctgga atgcgcggga
     1681 cacggcgcgc tgctcgatca cgtggtgccg ttgctcaagg cggggacgga ctgcgcggtg
     1741 gcatcgattg gtgctttgtc ggacgagaag ttactcgacg cattgtcgcg cgccgccgat
     1801 gaaggcgagt ccgtgctgac gctgttgtcc ggtgcgatag gtggcgtcga tgcgctggcc
     1861 gccgcccgcg aaggcggcct cgatgaagtc ctgtacacgg gccgcaagcc gccctcgggc
     1921 tggctgggca cgccggc
//
LOCUS       DATGBK010000221         1670 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_95352, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000221 DATGBK010000000
VERSION     DATGBK010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95352"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..835
                     /locus_tag="VKJ77_03275"
     CDS             17..835
                     /locus_tag="VKJ77_03275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC44326.1"
                     /translation="MQVIEVGSVRIPAIGLGTWELRGRACARLVEQALRLGYRHIDTA
                     QMYDNEREVGEAVRASGVKRDELFVTTKVWTTHFAPNDLERSTKESLAKLRLGEVDLL
                     LLHWPNPQVPLVETLGALARMKQLGLARHIGVSNFTVALIEEAVAVCPEPLVCDQVEY
                     HPYLDQTKVLEACARHQMAVVAYSPIAKGRLKSDRTLEQIGARYGKTAAQVSLRWLVQ
                     QNVAAIPRTSRIERLSENLDIFDFTLSDDEMRRIFAMGSAKGRLTDFGFAPKWD"
     gene            921..>1670
                     /locus_tag="VKJ77_03280"
     CDS             921..>1670
                     /locus_tag="VKJ77_03280"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HMC44327.1"
                     /translation="MFFLLSKFFGFFILPSNFIAVVCTAGAVLWLLKWHRAGARLMML
                     GTVLLLLFGFSPLGHILLLSLSDRFPPWHFDGRDPDGIIVLGGGIKSEISAARDSVEM
                     GAAGDRILAMLQLARRFPQARIVFSGGSPKLIETPVPEAPIAGRLLQQFDLDNGRVVL
                     DPDSRTTAENAEFVRKLVDPKSARHWLLVTSAFHMPRSIGTFRAAGFDVEAYPVDWRT
                     RGWVDAVNPFDKLSAGLSQSDLAVKEWVGLLG"
BASE COUNT          290 a          476 c          547 g          357 t
ORIGIN      
        1 acgcggagat gctgccatgc aggtcattga agtcggaagc gtcaggatcc cggcgatcgg
       61 gcttggcact tgggaactgc gcggacgtgc gtgtgcgcgg ctggtggagc aggcgctgcg
      121 gctcggctat cggcatatcg acactgcgca gatgtacgac aacgagcgtg aagtcggcga
      181 ggcggtgcgc gcctccggcg tgaagcgcga cgaactgttc gtgaccacca aggtatggac
      241 tacgcacttc gcgccgaacg atctggaacg ttccaccaag gaaagcctcg ccaagctgcg
      301 gctcggtgaa gtcgacctgc tgctgctgca ctggcccaat ccgcaggtcc cgctggtcga
      361 gacgctcggc gcactggcgc ggatgaagca gctcggcctg gcgcgtcaca tcggcgtttc
      421 gaatttcacc gtggcgttga tcgaagaagc ggtcgccgtg tgtcctgaac cgctggtctg
      481 cgatcaggtc gaatatcatc cctacctcga ccagaccaaa gtactggagg cttgcgcgcg
      541 tcatcagatg gcggtggtgg cctacagccc gatcgccaag ggacggctga agagcgaccg
      601 tacgctcgag cagatcggcg cgcgctacgg caagaccgca gcacaggtca gcctgcgctg
      661 gctggtacag cagaatgtcg ctgcgatccc gcgcacgtcg cggatcgaac ggctgtcgga
      721 aaatctcgac atcttcgatt tcacattgtc cgacgatgag atgcgccgga tttttgcaat
      781 gggcagcgcc aaaggccgcc tgaccgattt cggtttcgcg ccgaagtggg attgaacctt
      841 tcccttcttg accgatcctg cattgatctt gcgagccaga tcgctcatgc agggcgggtc
      901 aacggcgaga cgacgctgcc atgtttttcc tgctgtcgaa atttttcggg tttttcatac
      961 tgccgtcaaa cttcatcgcc gtggtttgca cggcgggtgc ggtgttgtgg ttgttgaagt
     1021 ggcaccgcgc tggtgcgcgt ttgatgatgc tcgggaccgt tttgctgttg ctgttcggct
     1081 tttcgccgct cgggcatatc ctgctgctga gcttgtcgga tcggtttccg ccgtggcatt
     1141 tcgacgggcg cgatcctgac ggcatcatcg tgctcggtgg cgggatcaag tcagaaattt
     1201 ccgctgcgcg cgactcggtc gagatgggag cggctggcga tcgtatcctc gcgatgttgc
     1261 aactggcgcg gcgttttccg caggcgcgta tcgtgttcag cggtggcagc ccgaagctga
     1321 tcgaaacacc ggttcctgaa gcgcccatcg cgggccgatt gctgcagcaa ttcgatctcg
     1381 acaacggacg cgtcgttctc gatccggatt cgcgcacgac cgcagagaac gccgaattcg
     1441 ttcgcaaact ggtcgatccg aaatctgccc gccattggtt gctggtgacg tcggcgtttc
     1501 acatgccgcg atcgatcggt acgttccggg cggcgggctt cgatgtcgaa gcctatcccg
     1561 tcgattggcg cacgcggggc tgggtcgatg cggtgaatcc attcgacaag ctgagcgcag
     1621 ggctgtcgca gagcgatctt gcggtcaagg aatgggtagg tctgctcggt
//
LOCUS       DATGBK010000222         2144 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_141732, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000222 DATGBK010000000
VERSION     DATGBK010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141732"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VKJ77_03285"
     CDS             complement(<1..534)
                     /locus_tag="VKJ77_03285"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC44328.1"
                     /translation="MISIRFLGTGGARFVVAKQIRASGGMWLRFGQTQMHLDPGPGAL
                     VRALSVIPPCEPAKLDAIVLSHKHLDHASDVNVMVEAMSQGGWKPRGALLAPSDAFDF
                     EPVIFPYVRKFVAREEYLRERSEPLRINDVEIRTSIRHQHPVETYGLHFRYAGKTVSY
                     LPCTRFFDELIEDYRAHA"
     gene            complement(531..887)
                     /locus_tag="VKJ77_03290"
     CDS             complement(531..887)
                     /locus_tag="VKJ77_03290"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HMC44329.1"
                     /translation="MKIAADAGLPPRGTPKNYLIAWLLVMLRRSHLHGYEIMKELREE
                     FGMTCDPGTVYRTLRQLEGGELIRSHWDPHDHGPARRVYELTDAGTAALDRWNVALHE
                     YRTSLDAFFRVYGTTG"
     gene            1007..2089
                     /locus_tag="VKJ77_03295"
     CDS             1007..2089
                     /locus_tag="VKJ77_03295"
                     /inference="COORDINATES: protein motif:HMM:NF005071.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC44330.1"
                     /translation="MLVLFALSLGLGTTALAGPYPAPVDGNYVVRQFRFADGETMMNM
                     RLHYVTIGSPHRNRKGHVDNAVLVMHGTGGNTKQFLSDRFAGVLFTPGGILDAAKYFI
                     IITDDIGHGDSAKPSDGLHAKFPHYGYRDMVAAEHAVVADALHVDHLRLVMGTSMGAM
                     HTWLWGETYPTMMDALMPLASEPVQIGGRNRIWRDMIVDDLRNDPGYNGGEYSAQPAG
                     MKAAYDILWFMGTAPLFNQATYPTRDQADAYYEKSVKPRAKEYDANDMIYQFEASRDY
                     DPEPALGSIVAPLFAVNSADDQINPPELGIMEKEITHVKNGRYILLPITSQTRGHGTH
                     TLPAVWGSYLSELLAKSAPASPVASR"
BASE COUNT          435 a          667 c          634 g          408 t
ORIGIN      
        1 cgcatgcgcg cggtagtctt cgatcaattc gtcaaaaaaa cgcgtgcacg gcagataaga
       61 tacggtcttc ccagcatagc gaaaatgtaa gccgtacgtt tcgaccgggt gctggtgacg
      121 gatcgacgtg cgaatctcca cgtcgttgat gcgtaacggc tcgctgcgtt cgcgcaggta
      181 ttcttcgcgg gcaacgaact tgcgcacgta cggaaagatc accggctcga aatcgaacgc
      241 gtcgcttggc gcaagcaacg cgccgcgcgg tttccagccg ccttgggaca tcgcttcgac
      301 catcacgttg acgtcggagg catgatcgag atgcttatgc gaaagcacga tcgcatcgag
      361 cttggccggt tcgcacggcg gaatcaccga cagcgcgcgc acgagagcgc ctgggccggg
      421 atccaaatgc atctgcgtct ggccgaagcg aagccacatg ccgcccgacg cacggatctg
      481 tttcgctacg acaaagcgtg cgccacccgt tccgaggaac cggatggaga tcatccggtc
      541 gtgccgtaca cgcgaaaaaa tgcgtcgagg ctcgtgcggt attcgtgcag cgccacattc
      601 cagcggtcca gggcagccgt tccggcatcg gtcaattcgt acacccgtcg cgccggtccg
      661 tgatcgtgcg ggtcccagtg cgaacgaatc aactcgccgc cttcgagctg gcgcagcgtc
      721 cggtacaccg tgcccggatc gcacgtcatc ccaaattctt cgcgcaattc tttcatgatt
      781 tcgtagccgt gcaggtggga gcggcgcagc atcacgagca gccaggcgat caggtaattt
      841 ttcggcgtcc cgcgtggcgg aaggccggca tcggcagcga tcttcatatc ggtagggata
      901 gaggcgattc gcacgtagct gggatgctcc cctcggcaga gcgctcggtc gcccgattcg
      961 taggcgtcac ccgcaaagtc gcgaaacgcc gcctatgctg cgacgcttgc tagtactctt
     1021 tgcgctctcg cttggactcg gcacgaccgc gcttgcgggc ccgtacccgg cgccggttga
     1081 cgggaattat gtcgttcggc agttccgttt tgccgacggt gaaacgatga tgaacatgcg
     1141 ccttcactac gtgacgatcg gctcgccgca tcgtaatcgc aaaggccatg tcgacaacgc
     1201 cgtgctcgtg atgcacggta ccggcggcaa tacgaagcaa ttccttagcg atcgttttgc
     1261 cggcgtgctg ttcacgcccg gcggcatcct ggatgcggca aaatatttca tcattattac
     1321 cgacgatatc ggccacggcg attcggccaa gcccagcgat ggcttgcacg cgaagtttcc
     1381 gcactacggc tatcgcgata tggtcgccgc cgaacacgcc gtcgtcgccg acgcgttgca
     1441 cgtcgatcat ttacgcctcg tgatgggcac ctcgatgggc gcgatgcaca cctggctttg
     1501 gggagaaacg tatcccacga tgatggacgc gctcatgccg ctcgcgagcg agcccgttca
     1561 aatcggcggc cgtaaccgca tctggcgcga catgatcgtc gatgacttgc gtaacgatcc
     1621 cggctataac ggcggagaat acagcgcgca acccgccggg atgaaggctg cgtacgacat
     1681 tctctggttc atgggcacgg caccattgtt caatcaggcg acgtatccga cgcgcgatca
     1741 agccgacgcc tactacgaaa aatcggtcaa gccccgtgcc aaagaatacg acgcaaatga
     1801 catgatctac caattcgagg cctcgcgcga ttacgatccc gagcccgcgc tcggttcgat
     1861 cgtcgcgccg ttgttcgccg tcaactccgc cgacgatcaa atcaacccgc cggaactcgg
     1921 catcatggag aaagagatca cgcatgtgaa gaacggccgc tatatcttgc tgccgataac
     1981 gtcgcaaaca cgcggacacg gcacacatac gctacccgcc gtttggggct cgtacttaag
     2041 cgagctgctt gccaagtcgg ctccggccag tcccgtagcg agccgctagg tggctgccgc
     2101 cgggccggtt gacacgttca tcgcgatcgc gaacgcgacg gcgg
//
LOCUS       DATGBK010000223         3877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_49165, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000223 DATGBK010000000
VERSION     DATGBK010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3877
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49165"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..502)
                     /locus_tag="VKJ77_03300"
     CDS             complement(<1..502)
                     /locus_tag="VKJ77_03300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC44331.1"
                     /translation="MWSYTLRRVLLTVPTLLIVITVCYLLLHATPGGPFDGERKVSAE
                     VLANLQAKYHLGEPLWKQYLLYLNSLLHGDLGASFRYADWSVNDLVLRALPVSLTIGG
                     VSMVLAIVLGVVLGIVAALYRNSPADYLLMIIGNAGSAFPSFVIGPVLILVFAILLKW
                     LPAGGWN"
     gene            complement(594..2294)
                     /locus_tag="VKJ77_03305"
     CDS             complement(594..2294)
                     /locus_tag="VKJ77_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC44332.1"
                     /translation="MTLFAALVARSTHVDALFRPGDAVSRRVSGKWLPALAASVCVAA
                     ASNVHLAHAAIVPPGVQLAAKQELVRNNASEVETLDPNLAETVPSNNVTRDLFEGLTA
                     TDADGTVVPGVAEKWEQKDATTWIFHLRKNAKWSNGEPVVASDFVYGCQRLVDPKIAS
                     PYASTFGIFLLNGAEIVAGKKSPDTLGVRAIDPYTVEIKTPYPVSFIPELMSNTNLGP
                     VNKAAVDKYGKDWTKPGKLVSNGAFMLKDWQVNNKLVLARNPQYWDAAHVQLSQVTYL
                     PVESETSDIKLFQSGDNDWVYQLPSGMYPKYKQEFAADMKIAPMLGLRYYSFNNKDPL
                     LKDVRVRQALSMVIDRDILAQRVTADGQIPAYGVIVKGVKGADVTAYDWSTWPMAKRV
                     EEAKKLLAQAGVKPGTTLHFATNTSDYHKKMAIFAASEWKTKLGLDTQIDAMEFKVLL
                     KKRHAGDYQIARNGWVADYNDATTFLQLVQCGSDQNDSGNCNPKADALIRQANDSTDQ
                     VKRTQLQTQAAKLVMDDYPILPLLQYTTVRLVKSYVGGYSLKNPMDRYRSKDMYIVAH
                     "
     gene            2791..3720
                     /locus_tag="VKJ77_03310"
     CDS             2791..3720
                     /locus_tag="VKJ77_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44333.1"
                     /translation="MIRFRQIEAFRSLIMMGTSVGAARALHVTQPAISRLIADLEADL
                     GFSLFSRVGGRLNPTNAGLRFYKSVEENFLGLDRLRQVAEIIRDEASEGLTVACLPVL
                     ASTLLPPILADFVERHPGVPIRVDSVKVPEVLTILQNHKADVAISQAFASVAGIEVEK
                     LLHARAQCAMPASHRLAKKKIVRAQDLRGERIIGWLPNSRQPYAAEQSLFAAGEDRAN
                     YTVMTDTAHTRYAMVAGGLGISIVEPFAAKVWRAHGVVVRPFEAAIEYEYVLSYPSSG
                     IRSDLVASFRESVLRVVATYSLDEAPAPAGAEA"
BASE COUNT          749 a         1168 c         1148 g          812 t
ORIGIN      
        1 tgttccagcc accggccggc agccacttca gcaggatcgc gaatacgagg ataagcaccg
       61 gtccgatcac gaaagaaggg aacgcgctgc ccgcattgcc gatgatcatc agcagataat
      121 ccgccgggct gttgcgataa agcgccgcaa caataccaag cacgacgcca agcacaatgg
      181 cgagcaccat ggatacgccg ccgatagtca acgacaccgg caacgcacgc agcacgaggt
      241 cattgacgct ccagtcggcg tatcggaacg atgcgcccag gtcgccgtgc agcaggctgt
      301 tgagatacag cagatactgc ttccacagcg gttcgccgag atggtatttc gcctgcaggt
      361 tggcgagcac ctcggcagac accttgcgct caccatcgaa cggaccgccc ggcgtagcgt
      421 gcagcagcag atagcatacg gtgatgacaa tcagcagcgt aggcacggtc aacagcacgc
      481 gcctcaacgt ataggaccac attgaacatc tctcctgggg agccgcgacc cagcgagtcg
      541 cggcgacagc ctcttgctgt ttgctggata gtattgcggg tctggcgtcg cgctcaatgc
      601 gccacgatat acatgtcctt gctgcggtaa cggtccatcg ggttcttcag cgaatagcca
      661 cccacatagc ttttcacgag cctgaccgtg gtgtattgca gcagcggcag gatcggatag
      721 tcgtccatca cgagcttcgc ggcctgggtt tgcaactgcg tgcgtttaac ctggtccgtg
      781 ctgtcgttcg cttgccggat cagcgcgtcg gccttgggat tgcaattgcc gctgtcgttc
      841 tggtccgagc cgcattgcac aagctgcagg aacgtggtcg cgtcgttata gtccgcgacc
      901 cagccattgc gcgcgatctg gtagtcgccg gcatgacgct tcttcagcag gaccttgaac
      961 tccatcgcgt cgatctgcgt gtccagcccg agcttcgttt tccattcgga ggccgcaaaa
     1021 atagccattt tcttgtgata gtcgctcgtg ttcgtcgcga agtgcagcgt cgtgcccggc
     1081 ttcacgcctg cttgcgcgag cagcttcttc gcttcttcca cgcgcttggc catcggccac
     1141 gtcgaccagt cgtaagccgt cacgtccgcg cccttcacgc ccttcacaat gacgccatat
     1201 gcggggatct gcccgtccgc ggtgacccgt tgcgcgagaa tgtcacggtc gatcaccatg
     1261 gagagcgcct gacgaacgcg cacgtccttg agcaacggat ccttgttgtt gaacgagtag
     1321 taacgcagtc cgagcatcgg cgcgatcttc atgtcggcgg cgaactcctg cttgtatttc
     1381 gggtacatgc cggacggcaa ctgatacacc cagtcgttgt cgcccgactg aaacagcttg
     1441 atgtccgagg tctcgctctc gacaggcaga tacgtcactt gcgacaactg cacgtgggcc
     1501 gcatcccagt actgcgggtt gcgtgccagc accaacttgt tgttcacttg ccagtccttg
     1561 agcatgaacg cgccattgct caccagcttg ccgggtttgg tccagtcctt gccgtactta
     1621 tcgacagcgg ccttgttgac cggaccgaga ttcgtattcg acatcagttc cgggatgaac
     1681 gacaccggat acggcgtctt gatctcgacc gtgtacgggt cgattgcacg cacacccagc
     1741 gtgtccggtg acttcttgcc cgccacgatt tcagcaccgt tcagcaagaa aatgccaaac
     1801 gtactggcgt atggcgaagc gatcttcggg tcgaccaggc gctggcagcc gtacacgaaa
     1861 tcgctcgcga caacaggctc gccgttggac cacttggcat tctttcgcag atggaagatc
     1921 caagtggttg catccttctg ctcccatttt tccgcgacgc ccggcacaac ggtcccgtcg
     1981 gcatcggttg cggtcagccc ttcgaacaga tcgcgcgtga cgttgttgga cggcacagtc
     2041 tcagccaggt tcggatcgag cgtctcgacc tcggacgcgt tgttgcgcac cagttcctgc
     2101 ttcgccgcaa gctgcacgcc gggcggcacg atagccgcat gagccagatg aacattgctt
     2161 gcggctgcaa cgcagacact cgcggcaagg gcgggaagcc acttgcctga cacgcggcgg
     2221 ctaacagcat cgcctggacg aaaaagcgcg tcaacgtggg tgctacgggc aacgagagct
     2281 gcaaacaacg tcatgggaat ccttattttt tatgtgttca tcaagcactg atcggcggag
     2341 cataagggct tttgaccctg tgcaacgcgg cgacgcgtgc cgttatgtgt ggctatatgt
     2401 cgctatgtac cgcggttcgc atgccgaagc agacggacgg cggccagcat cttagcccac
     2461 ctaacatttc gctttcgaat ttatcgatca agggtcggca tcgtgtgcct gcgcttgtcg
     2521 cgtattcgtt tccttctcca acagttacct tcaaaaaact ttacacatgt cctacgaacg
     2581 gacgacaaag ccgagttcgc ggggagtatt tcagagcaat aaagcggaat ccactcacat
     2641 gtgcttatag tccatgtgtt ttgggtatag gcaggcggtt gcgggtttaa cttgcgcttc
     2701 atatacgcgc gcgcggccgt aaatcagcag gcacgcgtgg ttcgcgctac catcggcgtc
     2761 cttgagattc gtagaaggtg attcaagaca atgatccgtt ttcgacagat agaagctttc
     2821 cgctcgttga tcatgatggg tactagcgtc ggagccgcgc gcgcgctgca cgtcactcag
     2881 cccgcgatca gccgcctgat cgcggattta gaggctgacc tcggttttag cctgttcagt
     2941 cgcgtgggcg gccgcttgaa tccgactaac gcagggttgc gtttttataa gtcggtcgaa
     3001 gagaatttcc tggggctgga ccgcctgagg caggtcgccg agatcattcg cgacgaggcg
     3061 tccgaagggc tgaccgtcgc gtgcttgccg gtgctcgcga gcaccctgct gccgcccatc
     3121 ctcgccgact tcgtcgagcg ccatccgggc gtgcccattc gcgtcgattc ggtcaaggtc
     3181 ccagaggtgc tcacgatcct gcaaaaccac aaggcggacg tcgctatcag ccaggcgttt
     3241 gcgtcggttg cagggatcga ggtggagaag ttgctgcacg cgcgggcgca gtgcgccatg
     3301 ccggcgtcgc atcggttggc gaagaaaaaa atcgtgcggg cgcaggatct gcgtggcgaa
     3361 cgcatcatcg gctggttgcc gaattcaagg caaccctatg cggccgagca atcgttgttc
     3421 gccgcgggtg aagaccgggc gaactacacg gtgatgaccg ataccgcaca cacgcgctat
     3481 gcgatggttg cgggtggcct gggtatatcg atcgtcgaac cgtttgcagc caaggtgtgg
     3541 cgggcgcacg gcgtggtcgt gcgcccgttc gaagccgcga tcgaatacga atacgtgctg
     3601 tcgtatccga gcagcggcat acgctcggat ctggttgcat cgttccgcga gtccgtgctg
     3661 cgagtggtgg caacgtactc gcttgacgaa gcaccggcac ccgcgggcgc cgaggcctga
     3721 cccacgcgtc cggcttcgcg ctttcaccgg agcggcgaga cgccgtcaac gcaggtcgtg
     3781 atcgacctct cgtggccgga cggattgcgt aacttgtcgc cctccgcgcc ggaccatcac
     3841 gcccctgcca gcggtcaagc acggggcttc ccactct
//
LOCUS       DATGBK010000224         1667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_72054, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000224 DATGBK010000000
VERSION     DATGBK010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72054"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(187..>1667)
                     /locus_tag="VKJ77_03315"
     CDS             complement(187..>1667)
                     /locus_tag="VKJ77_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011615178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HMC44334.1"
                     /translation="RFALAGLCIVFVPTLLLGAAFPFAIRLGVNSSHVGRDVGIVIAM
                     NTAGGIAGTMLAGFVMVPKLGVVHALAALALGASVVGLIAVFCGSGARLFARGCVLGL
                     AACALCAAVFTPSDRLAAMLTKARGGDLTFYAESEGGTVAVVAQRSGENRFKRLYIQG
                     VSNSGDAMTSLRYMRLQAMLPLIIHRGTPRSALVIGLGTGITGGALLPYPGLEHRVVA
                     ELLPAVVRAVPQFKGNYGVSTDPRMEIRLHDGRRELLRNPQHYDLITLEPPPPSAAGV
                     VNLYSSDFYRLAASRLQPAGLVAQWLPLPTQNEEDTRALIKSFVQVFPYATMWTTELH
                     EMMLVGSMEPIELDVPRIRERFAQPGVAAALREVGIASPAALLATWITDRAGLEYYAA
                     DAQPVTDNRPGIEYAAWVRSADFPKVLTQLLALRSEPPLQGADNAFLESMQTERGTLQ
                     AFYDAGLAAYRGDRDAWQENIRRVMRDDESNPYYRWFVGAGG"
BASE COUNT          330 a          546 c          507 g          284 t
ORIGIN      
        1 cccgaacgtg aacgggctcg cacagtagtt cctgcggccg gccgggagct cgtgcgccgg
       61 cccggctgac acttccgcgt gggcgttcgt ctacgcatct gaatcccgca cacaggactc
      121 gccgccagac tcacgcggaa ccgggcgacc aagctctgct cccttgcggt atccctcgcg
      181 gacacgctaa ccgcctgcac cgacaaacca ccggtagtac ggattgcttt cgtcgtcgcg
      241 catgacccgg cgtatatttt cctgccacgc gtcgcgatct ccgcgataag ccgccagccc
      301 cgcatcgtag aaggcctgca acgtgccgcg ttcggtctgc atggattcca ggaacgcgtt
      361 atccgcgccc tgtagcgggg gctcgctgcg caaggccagc aactgcgtca ataccttggg
      421 gaagtcggcg ctgcgtaccc acgcagcgta ttcaatgccc ggccggttgt cggtcacagg
      481 ttgcgcatcg gcggcgtagt actcgaggcc ggcgcgatcc gttatccatg tggcaagcag
      541 cgcggcgggg gatgcaatac ccacctcgcg cagcgccgcg gcaacgcccg gctgcgcgaa
      601 gcgttcgcgg atacgcggca catccagttc gatcggctcc attgaaccta cgagcatcat
      661 ctcgtgcagc tcggtggtcc acatcgtggc gtagggaaac acttgtacga agctcttgat
      721 caacgcacgc gtgtcctctt cattttgtgt tggcaggggc aaccattgtg cgacgagccc
      781 agccggttgc agtcgcgacg ccgccaaccg ataaaaatcc gacgagtaca ggttgaccac
      841 acccgcggcc gatggcggtg gcggttccag cgtgatcaag tcgtagtgct gcgggttgcg
      901 cagtagttcg cgccgcccgt cgtgcagccg gatctccatg cgcgggtctg tgctcacgcc
      961 atagttaccc ttgaattgcg gcactgcgcg caccacagcg ggaagcagtt cggcaacaac
     1021 gcggtgttcg aggccgggat aaggcaacaa cgcgccgccc gtgatgcccg tccccaagcc
     1081 aatcaccagc gccgagcgcg gcgtgccgcg gtgaatgatc agcggcagca tggcttgcaa
     1141 gcgcatgtat cgcagtgacg tcatggcgtc gccggaattg gatacaccct ggatgtacag
     1201 gcgtttaaag cgattctctc cggacctttg cgcaacgacc gcaacggttc ccccttcgct
     1261 ttctgcatag aaggtcaggt caccgccacg ggctttggtg agcatcgcgg cgagccggtc
     1321 ggaaggcgtg aacactgcgg cgcatagcgc acatgcggca agaccaagca cgcacccgcg
     1381 cgcgaataaa cgggcaccgg aaccgcaaaa gaccgcaatc aatccgacca cactcgcccc
     1441 aagggccagt gcggcaagcg catgaacgac gcctagcttc ggcaccatga cgaagccggc
     1501 gagcatcgtg cctgctatgc cgcccgctgt gttcatcgct atgacgatgc cgacatcgcg
     1561 ccctacgtgg ctgctgttca cgccaagacg tattgcgaag gggaatgcag cacctagcaa
     1621 cagggttggc acaaagacaa tgcagagacc cgcaagcgcg aaacgcg
//
LOCUS       DATGBK010000225         2869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_257199, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000225 DATGBK010000000
VERSION     DATGBK010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257199"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            287..868
                     /locus_tag="VKJ77_03320"
     CDS             287..868
                     /locus_tag="VKJ77_03320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018443681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HMC44335.1"
                     /translation="MSRLLWLAALTFGAMLGPMQGAVAQERAPEAAQQDAAASGATAE
                     ATHQVSQLISQKFGVARAKAEQISAAVMSAASKYSLPPALLLAIISVESRFKEKARGA
                     NGATGLMQVVPAAHKQLVRNIDLTEATANIEAGSAILHGYVQSARGDVGAALKSYGGS
                     KAYAEKISLRARAFAPQFGSGTDADTNTETTGD"
     gene            complement(1033..>2869)
                     /locus_tag="VKJ77_03325"
     CDS             complement(1033..>2869)
                     /locus_tag="VKJ77_03325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC44336.1"
                     /translation="GITIFGVTGEMLASNRYFPVPAVSIANRDDFTSARSIRPDPYFS
                     LPLLGSVQQADVFTTSVGRSLNDGRFAGVVSIALKRDYFAGFYRDLSNGEPGMSVGLF
                     RRDGGILVREPPNRAGITHARDTAFTNAMRNNELFGHVRIRSSIDGVERVVAFRRVGD
                     YPLYVTSSIPTAAIFAEWRQHYTLIAVITAAPCVAVWVLVLFSLRQLRAQQAAWERWQ
                     AEVAMRLSAEASSRQLRRMGALGNLVANVAHDFNNLLMVVAANMELARRKNFNGLERE
                     VLAVERATVGAEALARRLLSVARKQPLKQEPIDLGVWLPAAAGLIETATGEKVQVKVQ
                     VPQDMWHVRADATELEFAIINIAVNARDAMPRGGRFVIRGQNVRVTADNVLPDGEYAL
                     LAFTDSGDGMPETTARRAFEPLFTTKLSGSGTGLGLAQVLAACEQAGGTARLDSVPGR
                     GTTVRVYLPRYYGPVSAPVTAPDDAAHAADSPGTLDSPDKVASARLHPGSILLVEDNE
                     EVAAGVAAVLATFGCDVRHELTADKAFDLLNEGSRFDLVLSDIQMPGRLNGIDLAEKV
                     RGTWPSQRIALMTGYADEFERARHTGVTILAKPFNIDELRELVLG"
BASE COUNT          536 a          965 c          885 g          483 t
ORIGIN      
        1 atcagcatag gttgcgcgac ggcatcgccg ccgggcctgg gcggtgcgta tggcctgctc
       61 gccgccgccg accagcagct ctacaaagcg aaggccgcag ggcgcgactg cgtccggccg
      121 ctcgcccacg cggcggcgcc ggtagtgagt ggctgagcac gccggcaggc atgcccagta
      181 ctggccgacg gcgcccggac ccgcttgggc gacccagcaa acacatgatt tgcaaggatt
      241 tttctcatcg gtataatgcg accttccctt cccaggccac ttccccatga gcagactcct
      301 ttggcttgct gcgctgacgt tcggcgcgat gctaggaccg atgcagggcg cggtggctca
      361 ggaacgtgcc ccggaagccg cccagcaaga tgcagcagcc agcggcgcca ccgccgaggc
      421 cacccatcag gtctcccagc tgatctccca gaagttcggc gtcgcgcggg caaaagcgga
      481 gcagatttca gccgcggtca tgtcagcggc atcgaaatac tcgctccctc ccgccctcct
      541 cctcgccatc atctcggtcg aatcccgctt caaggaaaaa gcccgcggcg ccaatggcgc
      601 aaccgggctg atgcaggtcg tgccggctgc gcacaagcaa ctcgtgcgca acatcgacct
      661 gacggaagcc accgcgaata ttgaagcggg atcggcgatt cttcacggtt atgtccagtc
      721 cgctcgcggc gacgtgggcg cagccctgaa gagctacggc ggttcaaaag cctacgcgga
      781 aaagatcagc ctgcgagcca gggcattcgc tccgcaattt ggctccggca ccgatgccga
      841 caccaacact gaaacgaccg gcgactgact ctgcgcttca gcgctctgca gcaatcactt
      901 ccgctcaaaa ctccctctca tcgcacggcg cgttgccacc acgcccggcg cggatcgatt
      961 tttgcagatc ttgctcgggg ccgccgtcgc ccgacttttt cgcacggaat agcgggtcga
     1021 tgagtcaatg agtcagccca gtaccagttc ccgcagttcg tcgatattga acggcttcgc
     1081 gagaatggtc accccggtgt ggcgcgcgcg ctcgaattcg tcggcatagc cggtcatcag
     1141 cgcgatccgc tgcgagggcc aggtgccgcg cactttctca gccaggtcga tgccgttgag
     1201 ccggccaggc atttgtatat ccgacaacac caggtcgaag cggctgccct cgttgagcag
     1261 gtcgaaggct ttatcggcgg tgagttcgtg acggacgtcg cagccaaagg tcgcgagcac
     1321 tgctgccacg cccgccgcaa cctcctcgtt gtcttccacc aacaagatcg aaccgggatg
     1381 cagtcgcgcc gacgcaacct tgtccggcga atccagcgta cccggcgaat ccgccgcgtg
     1441 ggctgcgtcg tccggcgcag tcaccggcgc ggagaccgga ccgtagtatc gggggagata
     1501 aacccgcacg gtcgtgccgc ggcccggcac gctgtcaaga cgcgcggtac cacccgcctg
     1561 ctcgcatgcc gccagcactt gcgccagccc caagcctgtg cccgagccgc tcagcttggt
     1621 cgtgaacagc ggctcgaatg cgcgccttgc ggtcgtctcg ggcatgccgt cgccgctgtc
     1681 ggtgaaggcg agcagcgcgt attcaccgtc gggcaaaacg ttgtcggctg tcacacgaac
     1741 attctggccg cggatgacaa aacggccgcc gcgaggcatc gcatcgcggg cattcacagc
     1801 aatgttgatg atcgcgaatt caagttcggt ggcgtccgca cgaacatgcc acatgtcctg
     1861 cggcacttgc actttcacct ggaccttctc gccggtcgcc gtttcgatca acccggccgc
     1921 tgcgggcagc cagactccga ggtcgatcgg ctcctgcttg agcggttgct tgcgtgcgac
     1981 gctgagcaag cgtcgcgcga gcgcttcggc gccgacggtt gcccgctcca ctgccaggac
     2041 ttcccgttca agcccgttga aattcttgcg ccgcgcaagc tccatattcg ccgccaccac
     2101 catcagcagg ttattgaagt cgtgcgccac gttggccacc agattgccga gcgcgcccat
     2161 gcgccgcaac tgccggctgg atgcctcggc cgacagacgc atcgcgactt ccgcctgcca
     2221 gcgctcccac gcggcctgct gcgcccgcaa ctggcgcagg gaaaacagca cgagcaccca
     2281 gaccgcgacg cacggcgccg ctgtaatcac cgcgatgagc gtgtagtgct gccgccattc
     2341 cgcgaagatc gcggcggtcg gaatggaact tgtcacgtag agcgggtagt cccccacacg
     2401 acgaaacgcc accacgcgct ccacgccgtc aatactcgag cgtatccgca cgtgcccgaa
     2461 cagttcgttg ttacgcatgg cgttggtgaa agccgtgtcg cgggcgtggg tgatgccggc
     2521 gcggttgggc ggctcgcgca cgagaatgcc gccgtcgcgg cgaaacaggc cgacgctcat
     2581 gccgggttca ccattcgaca gatcgcgata gaaccctgcg aaataatcgc gtttgagcgc
     2641 aatcgacacg acgcccgcaa aacggccgtc gttcaggctg cgcccgacgc tggtcgtaaa
     2701 tacatcggct tgctggacgc tgccgaggag cggcagggaa aaatagggat cggggcgaat
     2761 ggaacgagcg gaggtgaagt cgtcgcgatt ggcaatcgag acggctggca ccggaaaata
     2821 gcggttgctg gcgagcatct cacccgtcac gccgaaaatg gtgatgccg
//
LOCUS       DATGBK010000226         5173 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_72068, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000226 DATGBK010000000
VERSION     DATGBK010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5173
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72068"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..683)
                     /locus_tag="VKJ77_03330"
     CDS             complement(<1..683)
                     /locus_tag="VKJ77_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC44337.1"
                     /translation="MPTQPTHAGPQIEPRDGLSYVRGSTDIPLSDATVSRFLRGTAAK
                     YPDRPAVIFRDQNIRWTWREFADEVDALASGLLKLGVEAGDRVGIWSPNRSEWLLTQF
                     ATARIGAILVNINPAYRLSELEYALNKVGCKAVIAAEQFKTSKYLEMLQTLAPELASD
                     EPGALNAARFPDLKAVIRMGEGSTPGMLRFSDVMSRGRDHLNTAQLDALESALTAHDP
                     INIQFTSGTT"
     gene            complement(955..1380)
                     /locus_tag="VKJ77_03335"
     CDS             complement(955..1380)
                     /locus_tag="VKJ77_03335"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010107215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HMC44338.1"
                     /translation="MATIQVDVVSAEEQIFSGRAKFVALPGEAGELGILPGHTPLITR
                     IRPGAVRIEAENGEEEFVFVAGGILEIQPGVVTVLADTAIRGADLDEAKALEAKKRAE
                     EALQNTGSNLEYATAQAELAYATAQIAAIQRLRKLRSNH"
     gene            complement(1453..2847)
                     /gene="atpD"
                     /locus_tag="VKJ77_03340"
     CDS             complement(1453..2847)
                     /gene="atpD"
                     /locus_tag="VKJ77_03340"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HMC44339.1"
                     /translation="MSTTALVEGKIVQCIGAVIDVEFPRSDMPKIYDALVLEGSELTL
                     EVQQQLGDGVVRTICLGASDGLRRGTVVKNTGKPISVPVGKPTLGRIMDVLGRPIDEA
                     GPINSDVTRGIHQKAPKFEDLSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKT
                     VNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPG
                     NRLRVALTGLTMAEHFRDEGLDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLA
                     EEMGRLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFGHLDATVVLSRDIASLGI
                     YPAVDPLDSTSRQIDPNVIGEEHYAITRGVQQTLQRYKELRDIIAILGMDELAPDDKL
                     AVARARKIQRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVEGECDHLPEQAFYMV
                     GTIDEAFEKAKKIQ"
     gene            complement(2916..3818)
                     /gene="atpG"
                     /locus_tag="VKJ77_03345"
     CDS             complement(2916..3818)
                     /gene="atpG"
                     /locus_tag="VKJ77_03345"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HMC44340.1"
                     /translation="MAGMKEIRGKIKSVQNTRKITKAMEMVAASKMRRAQERMRAARP
                     YADKIRDVAAHMSAATPEYRHPFMVENKGAKAAGMILVTTDKGLCGGMNTNVLRAALL
                     KFKELEQKGQTIEASAIGSKGLGFLNRLKAKTVSQVTHLGDTPHLEKLIGAIKVQLDL
                     YSEGKISAVYLAFTRFVNTMKQEAVIEQLLPLSVSDFARKDGLDKDSELVTPKTSWDY
                     IYEPDAQTVVDELLVRYVEALVYQAVAENMASEQSARMVAMKAASDNAKTVIGELQLV
                     YNKSRQASITKELSEIVGGAAAVG"
     gene            complement(3955..>5173)
                     /gene="atpA"
                     /locus_tag="VKJ77_03350"
     CDS             complement(3955..>5173)
                     /gene="atpA"
                     /locus_tag="VKJ77_03350"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004524507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HMC44341.1"
                     /translation="DALGVPIDGKGPVNAKMTDAVEKIAPGVIWRKSVSEPVQTGLKS
                     IDAMVPVGRGQRELIIGDRQCGKTAVAIDAIINQKGKNLFCIYVAIGQKASSIMNVVR
                     KLEESGAMEYTIVVAASASESAAMQYLAPYAGCTMGEYFRDRGQDALIVYDDLTKQAW
                     AYRQISLLLRRPPGREAYPGDVFYLHSRLLERAARVSEDYVEKFTKGEVKGKSGSLTA
                     LPVIETQAGDVTAFVPTNVISITDGQIFLETDLFNAGIRPAINAGVSVSRVGGAAQTK
                     VIKKLSGGIRTDLAQYRELAAFSQFASDLDEATRKQLERGRRVTELLKQPQYQPLQVW
                     ELAIALFAANNGYLDDLEVAQVLPFEKGLRDYLKTKQADMIKRIEDNKDLSKDDEGAL
                     HAALKDFKKSGAY"
BASE COUNT         1013 a         1619 c         1428 g         1113 t
ORIGIN      
        1 gtggtgccgc tcgtgaactg gatgttgatg ggatcgtgag ccgtgagcgc cgattccagc
       61 gcgtcgagtt gcgccgtatt caggtggtca cgcccgcgcg acatgacatc ggagaaacgc
      121 aacatgccgg gcgtcgagcc ctcgcccatt cggatcacgg cttttaaatc gggaaaacgc
      181 gctgcgttga gcgcgcccgg ttcgtcgctg gcgagttcgg gcgcgagcgt ttgcagcatt
      241 tccagatact tcgaagtctt gaactgctcc gccgcaatca ccgccttgca gccgaccttg
      301 ttcaatgcgt actcaagttc cgacaaccga tacgccggat tgatgttcac caggatcgcg
      361 ccgatccgcg ccgtggcgaa ttgcgtaagc aaccattcag agcggttcgg cgaccagatg
      421 cctacacggt ctcccgcctc aacgccaagc ttgagcaaac ccgacgcgag ggcatcgact
      481 tcatcggcga attcacgcca ggtccagcgg atgttttggt cgcggaagat caccgcagga
      541 cggtcagggt atttcgcggc cgtcccgcgc aggaagcgag aaacggtggc atcgctcagc
      601 gggatatccg tcgagccgcg aacgtacgat aaaccgtcgc gcggttcgat ctgcggcccg
      661 gcgtgcgttg gttgggtagg catatcgaag gtctcctcca tgggatggcg cgataagacg
      721 aagacgaagc gccatgaaag cgattcggaa gcctaattgt gcatcgcgag aaagggctgg
      781 ggcattgagt cttacccgca agttacccgc aaaaacgccc ggatcaacgc atgttcgttg
      841 tgcagttttg cgcggaagcg cttgaggctg agcgcatgca tcgccgtttc gaaggccaat
      901 aaaaaaagca gcccgagggc tgcttttttt atctcgccag actcgcgaaa cgcttcagtg
      961 attgctgcgc agtttccgca gtcgctgaat cgccgcgatc tgagccgtcg cgtacgccaa
     1021 ctccgcttgc gcggttgcgt attcgaggtt cgaacccgtg ttctgcaacg cttcttcagc
     1081 gcgcttcttc gcttccagcg ccttcgcttc atcgagatcg gcgccacgga tggcggtatc
     1141 tgccagaacc gtcaccacgc ccggctgaat ctcgagaatc ccgccagcaa cgaacacaaa
     1201 ctcttcctca ccgttctccg cttcgatacg cacagcaccc ggacgaatcc gcgtgatgag
     1261 cggcgtgtgg cccggcagaa tgccgagttc acccgcttcg cccggcagtg cgacgaactt
     1321 cgcccggccc gagaagatct gctcttccgc gctgacgacg tctacttgaa tagttgccat
     1381 atcgactcca tgagcgtatt acgaggcgct cgcctcaagt gaagccagcg cccgctgcgt
     1441 tacacccgat ccttactgga tcttcttagc cttttcgaag gcttcgtcga tcgtgccgac
     1501 catgtagaac gcctgctccg gcagatgatc acattcacct tccacgatca tcttgaagcc
     1561 acggatggtt tccttcagcg gcacgtactt gcccggcgag cccgtgaaga cttccgcgac
     1621 gtggaacggc tgcgacagga aacgctggat cttacgagcg cgcgcaaccg cgagcttgtc
     1681 gtccggcgcg agttcatcca tgcccagaat cgcgataatg tcgcgcaatt ccttgtagcg
     1741 ctgcagcgtt tgctgcacgc cacgggtgat cgcgtagtgc tcttcgccaa tcacgttcgg
     1801 gtcgatctga cgcgaggtcg aatcgagcgg atccacagcc ggataaatac ccagcgaagc
     1861 gatatcacgc gacaacacga cggttgcgtc caagtgacca aacgtggtcg ccggcgacgg
     1921 gtcggtcaag tcatcggcag gaacgtacac ggcttgcacc gaggtgatcg agccggtttt
     1981 cgtcgacgtg atccgttctt gcagacggcc catttcttca gccagcgtag gctgatagcc
     2041 cactgccgac ggcatacgtc ccagcagagc cgacacttcc gtaccagcca gcgtgaaacg
     2101 gtagatgttg tccacgaaga acagcacgtc cagaccttcg tcgcggaaat gctcggccat
     2161 cgtcaggccg gtcagcgcga cgcgcagacg gttgcccggc ggctcgttca tctggccgta
     2221 caccagcgcg accttgtcca gaacgttcga atccttcatt tcatgataga agtcgttccc
     2281 ttcgcgggta cgctcgccaa caccggcgaa cacggaataa ccaccgtgct ctttagcgat
     2341 gttgttgatc agttccatca tgttcacggt cttgcccaca ccggcgccac cgaacagacc
     2401 gaccttaccg cccttggcga acgggcagat caagtcaata accttgatgc cggtttcgag
     2461 caattcggta gacggcgaca gatcttcgaa cttcggcgcc ttctggtgaa tcccgcgcgt
     2521 gacgtccgag ttgatcgggc cggcttcgtc gataggacga cccagcacgt ccatgatccg
     2581 gccaagcgtc ggcttgccaa ccggcacgct gatcggctta cccgtgttct tcaccaccgt
     2641 accgcggcgc aatccatccg atgcacccag gcaaatggta cgaaccacgc cgtcgcccag
     2701 ctgctgctgg acttcgagcg tcagttccga accttccaaa acgagcgcgt cgtagatttt
     2761 cggcatgtcg gaacgcggga attccacgtc gataaccgcg ccgatgcact gtacgatctt
     2821 gccttctacc aaagcagtag tactcatcgc atttccttta gatactaaat tcttcactcg
     2881 cgcgacaggc gcagttcgat tcgacgcttg gacgatcaac cgaccgctgc agcgccaccg
     2941 acgatttctg acaattcctt cgtgatcgat gcttgccggc tcttgttgta cacgagctgc
     3001 agttcgccga tcacggtctt cgcgttgtcg gacgcagcct tcatcgcgac catccgagcc
     3061 gattgctccg acgccatgtt ttccgccacc gcctgataga cgagcgcttc gacataacgc
     3121 acgagcagtt catcgacgac ggtctgcgca tccggttcgt agatgtagtc ccacgaggtc
     3181 ttcggcgtga ccagttcgct gtctttgtcc aggccgtcct tgcgcgcaaa atcgctgacc
     3241 gacaacggca gcaattgctc gatcacggct tcttgcttca tcgtgttgac gaagcgcgtg
     3301 aaagccagat aaaccgcgct gatcttgcct tccgaataca ggtcgagctg aaccttgatc
     3361 gcgccgatca gcttttccag atgcggcgtg tcgcccagat gcgtgacttg cgacacggtc
     3421 ttggccttca accgattcag gaagcccaga cccttgctgc cgatcgccga tgcttcgatc
     3481 gtctgacctt tctgctccag ctccttgaac ttcaggagcg cagcgcgcag cacgttcgtg
     3541 ttcatgccgc cgcacagacc tttatcggtc gtgacgagga tcatgccggc cgctttcgcg
     3601 cccttgttct caaccatgaa cggatggcga tactcaggcg tggcagcgct catgtgcgcg
     3661 gcgacgtcgc ggatcttgtc ggcatacggg cgagcagcgc gcatgcgctc ctgcgcgcgg
     3721 cgcattttcg acgcagccac catttccatc gccttggtga tcttgcgcgt gttttgcacg
     3781 ctcttgatct tgccgcggat ttccttcatt ccagccattg cttactcctt tgtcggtccg
     3841 agttagcgct ttagcggtta ctcggggccc atgcaaagct attgaagtgg cgcggggtgc
     3901 ttcgtttgtt ctgaaagcgg cccgcgccgc ttcaaagttc gaccaatacg aggatcagta
     3961 agcgcccgac ttcttgaagt ccttcagcgc ggcatgcaat gcgccttcgt cgtccttcga
     4021 caagtctttg ttatcttcga tgcgcttgat catgtcggcc tgcttggtct tcaagtagtc
     4081 gcgcagaccc ttttcgaacg gcagcacttg agcgacttcg agatcgtcga ggtaaccgtt
     4141 gttcgcagca aacagcgcga tcgccagttc ccaaacttgc agcggctgat attgcggctg
     4201 cttcagcaat tccgtcacgc gacgaccgcg ttccagctgc ttacgcgtcg cttcgtccag
     4261 gtccgatgcg aactgcgaga acgcggccaa ttcacgatac tgcgccaagt cggtacgaat
     4321 accgccggac agcttcttga tgaccttggt ctgcgctgca ccgccgactc gcgacacgga
     4381 cacgcctgca ttaatagcag gacgaatacc ggcgttgaac aagtcggttt ccaggaagat
     4441 ctggccgtcg gtaatcgaga tcacgttcgt cggaacgaat gcggtcacgt cgccggcttg
     4501 cgtttcaatg accggcagcg ccgtcagcga accgctcttg cccttgactt cgcccttcgt
     4561 gaacttctcg acgtagtctt ccgacacgcg agccgcacgt tccagcagac gcgagtggag
     4621 ataaaacacg tcgcccggat acgcttcacg acccggcgga cggcgcagca acagcgaaat
     4681 ctgacgatac gcccacgctt gcttggtcaa atcgtcatac acgatcagcg cgtcttgacc
     4741 gcgatcgcgg aagtattcgc ccatcgtgca gccggcgtac ggtgcgaggt attgcatcgc
     4801 agccgattcc gaagccgaag ccgcgaccac gatggtgtat tccatcgcgc cgctttcttc
     4861 cagcttgcgc accacgttca tgatcgacga agctttctgg ccgatcgcaa cgtagataca
     4921 gaagaggttc ttgcccttct ggttgatgat cgcgtcaatg gcaacagctg tcttgccgca
     4981 ctggcggtcg ccaatgatca gctcgcgctg gccacggcca accggcacca tggcgtcgat
     5041 ggacttcaga cccgtttgaa ccggctccga caccgactta cgccagatca cgcccggtgc
     5101 aatcttttcg acagcgtcgg tcatctttgc gttgaccgga cccttgccgt cgataggcac
     5161 gcccagtgcg tcg
//
LOCUS       DATGBK010000227         2834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_303291, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000227 DATGBK010000000
VERSION     DATGBK010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303291"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..1250)
                     /gene="metC"
                     /locus_tag="VKJ77_03355"
     CDS             complement(63..1250)
                     /gene="metC"
                     /locus_tag="VKJ77_03355"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005792847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004121 - cystathionine beta-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HMC44342.1"
                     /translation="MSLPLLRKATRLMRAGAPAFIDGTAPVNVPVERTSTVRFESTSS
                     RAALHKRREAGEAVSTYGRHGTQTHRALEAAIGELEGARDVLLAPSGLSAISLVFIGL
                     LSPGDHVLVHDGVYGPVRERIEPLLTRLGVAFTYFSAAEGLPHKLLQANTRLIYAESP
                     SSFLYEIIDLPALADFAHEQGVLLAADNTWGAGLLYQPLALGADISIQAVTKYLGGHS
                     DLMQGAISTADAAIGQRLREAHDALGLSVSADDAYLALRGIRTLPVRLAQHARGAFAV
                     ASYLQRVRQVTRVFHPALATDPGHALWSRDFHGANGLVSFALRDADTSHAAAFIDALQ
                     LFSIGASWGGYESLALIAPPRRLRSHSYWQGQEAVIRLHIGLEDADDLILDLAQAFRS
                     VLS"
     gene            complement(1250..1876)
                     /locus_tag="VKJ77_03360"
     CDS             complement(1250..1876)
                     /locus_tag="VKJ77_03360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012356702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine dioxygenase family protein"
                     /protein_id="HMC44343.1"
                     /translation="MTATSTPEQIGERQAAVTALLDHVRHIVAKQGVTRAALDAISER
                     LQALAVNHTELFSAADFPPPQAGSGDTSTRYRLNPGEDGFALYLNSLLPGKTTIPHNH
                     DTWAVIAALDGEELNRVYKRTDDGKDPERATLDLEREVVVRPGTPIAFLPEDIHSIHV
                     TGVTPTLHFHLYGRPLETLSGRLGYELDTGRVVRYNTTHMQRGTQAVG"
     gene            complement(1898..2791)
                     /locus_tag="VKJ77_03365"
     CDS             complement(1898..2791)
                     /locus_tag="VKJ77_03365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011494246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC44344.1"
                     /translation="MSLLALALDPLQDASPLGLAPARQGVTEGADPVLVSLRDVHLSY
                     GTVPVLKGIDLRVRRGEAVSIIGPSGSGKSTLLRVINGLIAPQQGDVHVDGIDVRAQR
                     TDAQKIALRKRIGFVFQQYNLFPHLNVLANLTIAPMSVLGRSRAEAEHDAHALLAKVR
                     LADKANAYPGELSGGQQQRVAIARTLAMRPDLILFDEVTSALDPETVGEVLAVIGELV
                     DDGQTCVLVTHEMRFAEDVSDEVFFTEGGVIIEHGAPSQIFSAPENERTRMFLQRARG
                     EDRRALRKRSRSGAALALATP"
BASE COUNT          558 a          864 c          897 g          515 t
ORIGIN      
        1 aaagccgcgt cgtttcgaat tgaggtcatg ggagaaaggc cggaatgaga gatggacagc
       61 gttcaggaca gcacgctgcg aaaggcttgt gcgaggtcga ggatcagatc gtccgcatcc
      121 tccagcccaa tgtgcaaccg gatcacggct tcctgcccct gccaatagct atgggaacgc
      181 aaacgccgcg gcggtgcgat aagggcgagg ctttcataac cgccccatga agcgccaatg
      241 ctgaatagct gcaacgcgtc gataaaagca gcagcgtggc tggtatcggc gtcacgcaag
      301 gcgaacgaga caagtccgtt cgcgccgtgg aaatcgcgcg accacaacgc gtgtccggga
      361 tcggtggcca acgcaggatg gaagacacgt gtgacctggc gcacgcgttg cagatacgac
      421 gcgacggcaa acgcgccgcg tgcgtgttgc gcaagacgta cggggagcgt acggatgccg
      481 cgcaatgcaa ggtaggcgtc gtcggcgcta acgcttaggc ctagcgcgtc gtgagcctct
      541 cttaagcgct gcccgatggc tgcatcagca gtcgatatag cgccctgcat caggtccgaa
      601 tggccgccca gatacttggt gacagcctgg atggagatat ccgcgcccag cgccagcggc
      661 tgatagagca agcccgcgcc ccatgtgttg tccgcggcga gcaagacacc ttgctcgtgc
      721 gcgaagtccg caagtgcagg gagatcaatg atctcgtata ggaacgaact cggcgactct
      781 gcatagatca ggcgcgtatt ggcctggagc agcttgtgcg gcaaaccctc cgctgcgctg
      841 aagtaggtga atgcaacacc cagccgcgtc agcagcggtt cgatccgttc gcgcacgggc
      901 ccataaacac cgtcgtgaac cagcacgtga tcgcctggcg acaacaagcc gatgaacacc
      961 agcgagattg ccgacaaacc tgaaggggca agcagcacgt cacgcgcccc ttccagttca
     1021 ccaatagccg cctcaagcgc ccgatgcgtt tgcgtgccat gccgtccgta cgtgctgacc
     1081 gcctcccccg cctcgcgccg tttatgcagc gccgcgcggc tcgacgtgct ctcgaaacgt
     1141 accgtgctcg tgcgttcgac cggcacgttg actggcgcgg tgccatcgat gaacgcaggc
     1201 gcaccggcac gcatcaggcg cgtcgcttta cgcagcaggg gcaaactcat cagcccaccg
     1261 cctgcgtgcc gcgttgcatg tgggtcgtgt tgtagcgcac cacgcgtccc gtatcgagtt
     1321 cataaccgag gcggccagaa agcgtttcca gcggccgccc gtagagatga aaatgcaggg
     1381 tgggcgtcac gcccgttacg tggatgctat gaatgtcttc gggcaggaac gcgatcggcg
     1441 tacccgggcg caccacgact tcgcgctcga ggtcgagcgt ggcgcgttcc ggatccttac
     1501 catcgtccgt gcgcttatac acgcgattca gctcttcgcc atcgagtgcc gcgatgactg
     1561 cccacgtatc gtggttatgc ggaatggtgg tcttgccggg cagcagcgag ttgagataaa
     1621 gcgcgaaccc gtcctcgccg ggattcaacc gatatcgcgt cgacgtatcg ccgctgcccg
     1681 cttgcggcgg cgggaaatct gcggcagaga acaactcggt gtggttcacg gcgagcgcct
     1741 gcaggcgctc gctgatggca tcgagcgcgg cgcgggttac gccctgcttc gccacaatat
     1801 gacgtacatg gtccagcaat gcggtaacag cggcctggcg ttcgccaatc tgctcgggtg
     1861 tggaggttgc ggtcatgttt taataaattg gtaaaaatca gggagtggcc aaagcgagag
     1921 cggcaccgct tcgcgatcgt tttcgcagtg cgcgccggtc ttcgccgcgt gcgcgttgca
     1981 ggaacatgcg cgtgcgttcg ttctccggcg cgctgaaaat ttgcgacggt gcgccgtgct
     2041 cgataatcac gccgccctcc gtgaaaaaca cttcgtcgct gacatcttcg gcgaaacgca
     2101 tttcatgcgt gaccagcacg caggtctggc cgtcgtccac cagttcgcca atcaccgcga
     2161 ggacttcgcc caccgtttcc ggatcgagcg cggacgtcac ttcgtcgaag aggatcaggt
     2221 cggggcgcat ggccagtgtc cgtgcaatag cgacgcgctg ctgctgccca ccggacagct
     2281 cacccgggta cgcattggcc ttgtcagcca gccgcacctt cgccagcaga gcgtgtgcgt
     2341 cgtgctcggc ttcggcacgg ctgcgcccaa gcacgctcat tggcgcgatg gtcaggttgg
     2401 cgaggacgtt caggtgtggg aacaggttgt attgctggaa cacaaagccg atgcgcttgc
     2461 gcagcgctat tttctgcgcg tcggtgcgct gtgcgcggac atcgattccg tcgacatgca
     2521 cgtcgccctg ctgcggcgca ataaggccgt tgatgacacg aagaagcgtc gacttgccag
     2581 aaccggacgg cccgatgatg gagacggcct cgcctcgtcg cacgcgcaga tcgataccct
     2641 tgagcaccgg cacggtaccg tatgagaggt ggacatcgcg taatgaaacc agcaccggat
     2701 cagcgccttc ggtaacgccc tgtcgtgctg gcgcaaggcc aagtggcgaa gcgtcttgaa
     2761 ggggatcgag tgcgagcgct agcagactca tgcgacctcc gcaggagttt ttacacgggt
     2821 cctgacagcg cgtt
//
LOCUS       DATGBK010000228         1652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_72087, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000228 DATGBK010000000
VERSION     DATGBK010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72087"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..286
                     /locus_tag="VKJ77_03370"
                     /pseudo
     CDS             1..286
                     /locus_tag="VKJ77_03370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012212800.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="TolC family protein"
     gene            complement(591..>1652)
                     /locus_tag="VKJ77_03375"
     CDS             complement(591..>1652)
                     /locus_tag="VKJ77_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleobase:cation symporter-2 family protein"
                     /protein_id="HMC44345.1"
                     /translation="ILDVFGATIAAGIVGIFLAPMIGKLLRFFPPVVVGTVIAVIGLS
                     LMGVGINWAAGGVGNPEYGNPVYLLLALVVLTLILMINKFARGFIANISVLLGIVAGF
                     GIAMSLGRVDLNGVTSAPWVGIVLPFHFGLPHFDPLSIATMIIVMFVTFIESTGMFLA
                     VGDMVERPVDQDALVRGLRVDGLGTLIGGIFNSFPHTSFSQNVGLIGVTGVKSRFVCA
                     TGGVILVALGLFPKMAQVVASVPPFVLGGAGIVMFGMVAANGIKVLSKVDFVKNHHNL
                     FIVAVSIGLGLVPVVAPKFFSQLPHALEPILHSGILLASVSAVLLNIVFNGVKKEREA
                     TCAIRHAGRDFDGTAKVEH"
BASE COUNT          372 a          522 c          463 g          295 t
ORIGIN      
        1 ggcgtttcgc gaagtggcgg acgggctggc cgcgcgcggc acgtacgacg agcagatcaa
       61 ggcgctcgag tcgtatgtga agtcgcaggc tcgtgggttg gaactgtcgg atatgcgata
      121 tcgcaacggc gtggacaact atctcgccgt gctgacggcc cagacaaacc tgtacaccgc
      181 gcagcagttg ctgattacgg cgcggctgaa ccgggcgacg aatctcgtcg atttgtatcg
      241 tgagctgggt ggcggctggg tcgagcatgc gggcgatcag ccacgtcctt cggatgcaat
      301 gccgaactac cgcgatatcg gcacgccaac ggctgctgct gctcctgcgg cttccggtac
      361 gacggttagc tcggcctcgg cgggtcctgc gaagctggtg ccggtgcagc atctggtgcc
      421 ggtggcgcag ccgcaggttg atgccaacgg gaaagcagtg ggatcgacag ggtagtgttg
      481 cacgtggttc agatgttgaa aaaccgcagc ctttcggggc tgcggttttt tttagtctct
      541 caggtctgca ctcacttcca cttccgttcg acgatttgac tcaacccgct ttagtgctca
      601 accttcgccg tcccatcaaa atcccttccg gcatgacgga tcgcacacgt cgcttcgcgt
      661 tctttcttca ccccgttgaa cacgatattc aacagcaccg ccgacaccga cgccagcaag
      721 atcccgctat gcagaatcgg ttccagcgca tgcggtaact gcgagaagaa cttcggtgcg
      781 acgaccggca cgagtcccaa gccaatactc actgcgacga taaacaggtt gtggtgattc
      841 ttgacgaagt cgaccttcga cagcaccttg atcccgttcg ccgcgaccat gccgaacatg
      901 acaatgcccg cgccgccaag cacgaacggc ggcaccgacg ccaccacttg cgccatcttc
      961 ggaaacagcc cgagcgccac gaggatcacg ccgccggtcg cacagacgaa gcggctcttc
     1021 acgcccgtta cgccaatcag cccgacgttc tgcgagaacg acgtatgcgg aaacgagttg
     1081 aagatcccgc caatcagtgt ccccaatcca tccactctca gtccgcgcac caatgcatcc
     1141 tgatcgacgg gacgctcgac catgtcgccg acggccagga acatgcccgt cgattcaatg
     1201 aaggtcacga acatgacgat gatcatcgtt gcaatggaaa gcgggtcgaa gtgcggcaag
     1261 ccgaagtgaa acggcagaac gatgccgacc cacggcgcgc tcgttacgcc attgagatcg
     1321 acgcgcccaa gcgacatagc aatcccgaac ccagccacga tgcccagcag caccgaaata
     1381 ttcgcgataa acccgcgtgc aaacttgttg atcatcagga tcagggtgag cacgacaagc
     1441 gccagcaaca gataaaccgg attgccatac tcagggttcc ccacaccacc ggctgcccag
     1501 ttgatgccca cgcccatcag cgataaaccg atcaccgcga tcaccgtgcc gactacgacg
     1561 ggtgggaaga atcgcagcaa ctttccgatc atcggcgcga ggaaaatccc cacgataccc
     1621 gccgcgatcg tcgcgccgaa tacgtcgaga at
//
LOCUS       DATGBK010000229         1583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_164827, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000229 DATGBK010000000
VERSION     DATGBK010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164827"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(359..>1583)
                     /locus_tag="VKJ77_03380"
     CDS             complement(359..>1583)
                     /locus_tag="VKJ77_03380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HMC44346.1"
                     /translation="PVELILGVGTSQGFAMVFALLIAAIIWNLGTWALGIPSSSSHTL
                     IGSVIGVGLMNQMMHGPSGTSGVDWGQALAVGKSLLFSPLVGFLLAGLLLYVMKLVVR
                     VPALYKEPKKNTPPPFWIRCLLILTCTGVSFAHGSNDGQKGMGLIMLILIGTVPTAYA
                     LNKAVTPAETQTFLSVGHHASEVLGKYTNGAAPVADPRATVQHYVQTKTVAPDTVVAL
                     KQLTEIIDAQVGPSSSMATVPQNIVNNVRNNMYVASEALRLMDKQNAPTFAADDAAVL
                     KNFKGQLDHSTKFIPTWVKVAVAVALGLGTMVGWKRIVVTVGERIGKTHLTYGQGASA
                     ELVAMLTIGAADVYGLPVSTTHVLSSGVAGTMAANGSGLQWRTVRSLALAWILTLPVS
                     IALAAGLFWVFRGLF"
BASE COUNT          323 a          484 c          481 g          295 t
ORIGIN      
        1 acaagcaaga ttgttccgat cattccactt ctccttaatt attaaagttt gctgaagagt
       61 gaatggcgat gccgcgtttg gtgcggcgtg agtatcggcg gattgcttca gcatgcgtgt
      121 ccgcagcacc aacaccctcg cgattgctgc tttcattgag caagcgctgt gcctatgcgt
      181 gggatggacg ccgtgtcagg agggtggacg aagggaggac aaacggccgt cggctatcgg
      241 caaattctgc aagcgcgcga gtggtttgaa aaaaccgctc gcgctttaac gtgaaactaa
      301 cgtgcaacgg gcctaaaacc gcgtttggaa aatcccggtc aatctatcca tgtgtcgctt
      361 agaacagccc gcggaacacc cagaacaatc ccgccgcgag tgcgatcgaa acgggaaggg
      421 tcaggatcca ggcaagcgcg aggctgcgca cggtgcgcca ttgcagccct gaaccgttcg
      481 ccgccatcgt cccggccacg cccgaggaca gcacgtgggt tgtgctgacg ggcaagccgt
      541 agacgtccgc cgcgccgatg gtcaacatcg cgacgagttc cgccgacgcc ccttgtccat
      601 acgtcaaatg ggtcttgccg atccgttcac caaccgtcac cacgatccgc ttccagccaa
      661 ccatggtgcc caagccgagc gccaccgcca cggccacttt cacccacgtc ggaatgaact
      721 tggtcgaatg gtcgagctgg cctttgaagt tcttgagcac ggcggcgtca tcggccgcga
      781 acgtgggggc gttctgcttg tccatcagac gcagtgcttc ggaggccaca tacatattgt
      841 tgcgcacgtt attcacgata ttttgcggca cggtcgccat cgacgacgac ggtccgactt
      901 gtgcgtcgat gatctcggtg agctgcttga gcgcgaccac ggtgtccggc gcgaccgtct
      961 tggtctgcac gtagtgctgc accgttgcgc gcgggtcggc aaccggcgcg gcgccgttgg
     1021 tgtacttgcc aagcacttcg gacgcgtgat ggccgaccga caggaaggtc tgcgtctcgg
     1081 ccggcgtaac ggccttgttc agcgcatagg cggtcggcac ggtgccgatc aggatcagca
     1141 tgatgaggcc catgcctttc tggccgtcat tggagccgtg tgcaaacgac acgcccgtgc
     1201 aggtcaggat caacaggcag cgaatccaga acggcggcgg cgtgtttttc ttcggctctt
     1261 tatagagcgc gggaacgcgc accacgagct tcatcacgta cagcagcaag cccgccagga
     1321 ggaagccgac cagcggcgag aacagcagcg atttgccgac cgcgagcgcc tggccccagt
     1381 cgacgcccga ggttcccgac ggcccgtgca tcatctggtt catcaggccg acgccgatta
     1441 ccgagccaat cagcgtatgg gagctcgatg aaggaatgcc cagcgcccaa gtaccgagat
     1501 tccagatgat cgcggcgatc agcagcgcga agaccatcgc gaaaccctgc gatgtgccca
     1561 cgccaaggat cagttccacc ggc
//
LOCUS       DATGBK010000230         1618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_187917, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000230 DATGBK010000000
VERSION     DATGBK010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187917"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VKJ77_03385"
     CDS             complement(<1..254)
                     /locus_tag="VKJ77_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44347.1"
                     /translation="MSSGPEPVSPDPAVMRGQDDRDVSSPGLDATTPADRDAIPGAEP
                     GHLLPGAEPAHLTFTAGGAGAANAQCDAEPIHTPGGIQPHG"
     gene            complement(251..850)
                     /locus_tag="VKJ77_03390"
     CDS             complement(251..850)
                     /locus_tag="VKJ77_03390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biliverdin-producing heme oxygenase"
                     /protein_id="HMC44348.1"
                     /translation="MQYDLLSRLKIETAECHTRLENALDLMRLEWPREDYVALLEGFY
                     GYVAPWEDAAATFMPARLRDFFEGRRKASLLALDLALLTGDKDRANRVTKIERLPAMN
                     SIGRVFGSMYVMEGSTLGGRFIAPHVATLFGLQSGSGNAYFEGYGLRTGSMWKAFRET
                     ASANVPPEQHDEAVDAAIATFDGLHGWLGQVRTGSGATA"
     gene            complement(1246..1563)
                     /locus_tag="VKJ77_03395"
     CDS             complement(1246..1563)
                     /locus_tag="VKJ77_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44349.1"
                     /translation="MTQQGKPSHDDAANATRQGPAQDGRELESKHPVQQKRDDGAVAP
                     LPHESDQSHASQQEDEPREVGEQAHEDLERGLQDTDRRGGAEYQERTQTGGHTDQVAK
                     RKR"
BASE COUNT          269 a          542 c          483 g          324 t
ORIGIN      
        1 ccgtgcggct ggataccgcc gggcgtgtgg attggttcgg cgtcgcactg cgcattggcc
       61 gcgcccgccc cgccagccgt gaatgtcagg tgagccggct cagcgccggg taacaggtgg
      121 cccggctctg cgccgggtat cgcgtcccga tccgcaggcg tggttgcgtc caaacccgga
      181 ctcgacacgt cgcgatcatc ctgcccgcgc atgaccgccg ggtccggcga cactggctct
      241 ggcccactgc tcatgccgtt gcccctgatc ccgtgcggac ctggccgagc cagccgtgca
      301 acccgtcgaa cgtggcgatc gcggcatcca ctgcctcgtc gtgctgctcg ggcggcacat
      361 tcgcactcgc ggtctcgcga aacgctttcc acatgctgcc cgtgcgcaat ccataacctt
      421 cgaaataagc gttgccggag ccgctttgca gaccgaacaa tgtcgcgacg tgcggcgcga
      481 taaagcgccc tccgagcgtg gaaccctcca tcacgtacat ggaaccgaaa acgcggccga
      541 tgctgttcat cgcaggcagc cgttcgattt tcgtcaccct gttcgcgcgg tctttatcgc
      601 cggtcaggag cgccagatcc aacgcaagca gcgacgcctt gcgacgccct tcgaaaaagt
      661 cgcgcagacg cgcgggcata aaggtggccg cagcatcctc ccacggagcg acgtatccgt
      721 aaaagccctc gagcaaggcc acatagtcct cccgcggcca ctcaagacgc atcaggtcca
      781 gtgcgttttc cagccgcgta tgacactcgg cggtttcgat tttcagacgg gacaggagat
      841 cgtattgcat gatccattca ataggttttc cgcgggtttg ccgcgcgaat gccgggatgt
      901 tgacccggat gcaagatacc cgacgatgcc gggtgatcat gctggacacg gcgaacggcg
      961 ttgctacagt tcgtggtgac tgcggcatgg atcggcacag cactgcggcc ggcgcaagca
     1021 tcgagcgctc ctggctcgcc gccccgaact ccgcgcccag tcggcatcga ttaccgatgc
     1081 acaggtcggc atgcacgcaa aaatggtaga aagaactgca gctaacaggc gtgaacgcct
     1141 ttctcagctt ggctcgcacg aggccgtgca ggttctccag taccgcgcgc ccattctacg
     1201 caagaggcgc tttgttgacc acgggcaaca atcggcgccg ccatatcacc gcttgcgctt
     1261 ggctacctgg tccgtgtgcc cgccggtttg tgtgcgctcc tgatactccg caccgccgcg
     1321 gcggtccgtg tcctgtaagc cacgctccag gtcttcatgc gcctgctcgc cgacctcacg
     1381 cggttcatct tcctgctgcg acgcatgact ctgatcgctc tcatgcggca gcggcgcgac
     1441 cgcgccgtca tcgcgttttt gctgcactgg atgtttgctt tccagttcac gtccgtcctg
     1501 cgccggacct tggcgcgtgg cgttggcggc gtcgtcgtgt gatggcttgc cctgctgagt
     1561 cattgcaacc tcgctgtagt gatcgttacg cggtgatcgt tatacggtga cctttccc
//
LOCUS       DATGBK010000231         2296 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_234235, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000231 DATGBK010000000
VERSION     DATGBK010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234235"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..576
                     /locus_tag="VKJ77_03400"
     CDS             <1..576
                     /locus_tag="VKJ77_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HMC44350.1"
                     /translation="VMMFPMMFSPVLVGFQFKFMLNDSTGIVNNLMQTLFGAKSAFPF
                     LVNANSALASLIAAEVWNSTPIFAVILLAGLMALPKDPIEASKVDGCTSWQTFRYVTL
                     PYLMPFIYISMTIRSLDVGRAYDIVRIMTNGGPGGRTELLWTMVGRIAYDDSRMGYAN
                     AIAYVSVLVSILFTLYFFRKLSGARKHMGPA"
     gene            581..1441
                     /locus_tag="VKJ77_03405"
     CDS             581..1441
                     /locus_tag="VKJ77_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HMC44351.1"
                     /translation="MSDMAIKGAFVRKSALWFGVFIVMAIICLPGLWVVLNAFRSNVA
                     ILSNQSPLVGASYTLDNFKSMFGYGQMASLPISQYFLNSLIISCVSTVAALAIGVLGG
                     YAFARFEFRHKKVMFVALMLTRAIPGIALSLPIFMLWAWTGLLDTRIGVILVYLAMNV
                     PFTVWLIDGFFREVPIELSQAAQIDGCNRWQAFWRIELPLAKSGIASAGIFAFLTSWN
                     EFALATQLCRSPDTKTLPVGLMDFTAQFSVDWAGMCAMAVIIIIPAIVLTFIVQKHLI
                     AGLTLGGVKG"
     gene            1466..>2296
                     /locus_tag="VKJ77_03410"
     CDS             1466..>2296
                     /locus_tag="VKJ77_03410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004555383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HMC44352.1"
                     /translation="MTTIETVDIRQVDLQPKVKRTDAIQSFVVQETVLVTLHCSDGSV
                     GTGYTYTIGTGGSSIVALLHDHLAPLLIGRDPAEYEAIWRDLFFHTHATAVGAITSLA
                     LAAIDTALWDRNTRVANLPLWIAAGGSKPRTRTYSTEGGWLHLSEAELVDQTVQARDA
                     GFHGAKIKVGRPHLAEDTRRLTAVRDAMGDDFEIMVDANQGFTLSEAIRRAHAFEPLR
                     LAWLEEPMPAENIAAHQRLCAASSVPIAVGESMYHPAQFAEYLKADACSIVQADVARV
                     G"
BASE COUNT          433 a          653 c          685 g          525 t
ORIGIN      
        1 gtgatgatgt tcccgatgat gttctcgccc gtgctcgtcg gcttccagtt caagttcatg
       61 ctcaacgaca gcacgggcat tgtgaacaac ctgatgcaga cgttattcgg cgcgaagtcg
      121 gcgttcccgt ttctcgtcaa tgcgaactcc gcgctcgcgt cgctgatcgc ggccgaggta
      181 tggaactcga caccgatctt cgcggtgatc ctgctcgccg gtttgatggc gttgccgaaa
      241 gatccgatag aagcgtcgaa ggtggatggc tgtacctcgt ggcagacctt tcgctatgta
      301 acgctgccgt acctgatgcc gttcatctat atctccatga cgatccgttc actcgatgta
      361 ggccgagcct acgacatcgt acgcatcatg acgaacggcg gtccgggtgg acgcacggaa
      421 ttgctctgga cgatggtcgg acgcattgct tacgacgact cgcgcatggg ttacgccaac
      481 gcaattgcct atgtctcggt gctcgtgtcc atcctcttca cgctgtactt cttccgcaag
      541 ttaagcggcg cgcgcaaaca catggggcct gcctgacatc atgagcgata tggcaatcaa
      601 gggcgcgttc gtgcgcaagt cagcgctgtg gttcggcgtg tttatcgtga tggctatcat
      661 ctgcttgccg gggctttggg tcgtgcttaa tgcgttccgt tcgaacgtcg cgattttgtc
      721 gaatcaatcg ccactggtcg gcgcgagcta cacactcgat aacttcaaaa gcatgttcgg
      781 ctacgggcaa atggcgtcgc tgcccatcag ccagtacttc ttgaattcgc tgatcatttc
      841 ttgtgtaagt acggtcgcag cgcttgcaat cggcgtgctc ggtggttacg cgttcgcgcg
      901 tttcgagttc aggcacaaga aggtcatgtt cgtggcgctg atgctcacgc gtgcgattcc
      961 aggcattgcg ttgtcactgc ctattttcat gctttgggca tggaccggcc tgctcgatac
     1021 gcgcattggc gtgatccttg tctatctcgc gatgaacgta ccgttcaccg tatggctgat
     1081 cgatggcttc tttcgcgagg tgccgatcga gttgtcgcag gcggcgcaga tcgatggatg
     1141 taaccgttgg caggcgttct ggcgcatcga gttgccgctc gcaaaaagcg ggattgcatc
     1201 ggcgggaatc tttgcatttc tcacgagctg gaatgaattt gcactggcca cgcaattgtg
     1261 ccgaagcccc gatacgaaga cgctgccggt cgggttgatg gacttcaccg cgcagttttc
     1321 ggtcgactgg gccggcatgt gcgcgatggc cgtgatcatc attattccgg cgatcgtgct
     1381 gacgttcatc gtccaaaaac atctgatcgc gggcctgacg ctcggcggcg tgaaaggttg
     1441 aacacgcttt agagggaact aaaaaatgac aactatcgaa accgtcgaca tccgccaggt
     1501 cgatcttcaa cccaaagtca aacgcacgga cgcgatccag tcgttcgtgg tgcaggagac
     1561 cgtgctggtc acgctccatt gcagcgacgg cagcgtgggc accggttata cgtacaccat
     1621 cggtacgggc ggttcgtcca tcgtcgcgtt gttgcacgat catctggcac ccttgctgat
     1681 tggacgcgat cccgccgagt acgaagccat ttggcgcgac ctctttttcc atacgcacgc
     1741 aaccgcggtc ggcgcgatca cgagcctcgc cctggcggca atcgataccg cactatggga
     1801 ccgcaacacg cgcgtggcga acctgccgct gtggatcgcg gcgggtggat cgaagccgcg
     1861 cacgcgcacg tattccaccg aaggcgggtg gttgcattta tcggaggcgg aactcgtcga
     1921 tcaaaccgtg caagcacgcg acgctggttt tcatggtgcg aagatcaagg tcggtcggcc
     1981 acatctggct gaagacacgc ggcggcttac cgctgtgcgc gacgcgatgg gcgacgactt
     2041 cgagatcatg gtcgacgcga atcaaggctt cacgttatcc gaagcgatcc gccgcgcgca
     2101 cgcgttcgaa ccgttgcgcc ttgcatggct cgaagagccg atgcccgccg aaaatatcgc
     2161 tgcgcatcag cgcctttgcg cagcgagttc ggtgccaatt gcagtgggcg aatcgatgta
     2221 tcaccccgcc caattcgccg agtatctgaa ggcggacgcg tgctcgattg ttcaggccga
     2281 tgtcgcgcgc gtgggc
//
LOCUS       DATGBK010000232         3558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_2740, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000232 DATGBK010000000
VERSION     DATGBK010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3558
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2740"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1432)
                     /locus_tag="VKJ77_03415"
     CDS             complement(<1..1432)
                     /locus_tag="VKJ77_03415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020653391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HMC44353.1"
                     /translation="MNERQPTAGLSHAFLEGGGEVARIIASRDWSTSPLGPLEGWSKT
                     LTGTIALILQSPVPIVTLWGVDGVMLYNDAYSVFAGGRHPQLLGSKVREGWSEIADFN
                     DNVMKVVLAGRTLRYEDQELTLHRHGRGEQVWMNLDYSPIRDEQGVPIAVIAIVVETT
                     AKVRAERAVHESEEKFRTFAQAMPNQVWSARRDGELDWFNDRVYEYSGAAQGSLDGQA
                     WSEIIHRDHVEAAAGQWAHAVASGTTYECEFRIRRADGVFRWHIARALPIRDNAGRIV
                     RWIGTNTDIEDQKSAARALERLNRTLEQQVAESVADRDRMWRLSTDMMLVADFQSNIV
                     AVNPAWRQILGWDEKNLIGHSFLEFVHPDDRIETLAELGELSEGIRTFKFVNRYQRQD
                     GAYVTLSWTAVPDDRFIHAVGRDITADREAADALRRTELALQQAQKMETLGKLTGGVA
                     HDFNNLLQVISGNLQLLATDVAGSERA"
     gene            complement(1670..2167)
                     /locus_tag="VKJ77_03420"
     CDS             complement(1670..2167)
                     /locus_tag="VKJ77_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YetF domain-containing protein"
                     /protein_id="HMC44354.1"
                     /translation="MNALIAVFGSGKDLDSLQMAARAVAVFIGALICIRISGRRSFGQ
                     RSPFDYVVAILLGATLSRAIVGASPAVPTVVASLAIVVLHRVLAWGCLHSPTLERLVG
                     GAERELYRDGRFDEKQMSAALITRTDLFETARQQLGADDLSGVRTATLERNGEISLIR
                     DKDAH"
     gene            2625..2849
                     /locus_tag="VKJ77_03425"
     CDS             2625..2849
                     /locus_tag="VKJ77_03425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6723 family protein"
                     /protein_id="HMC44355.1"
                     /translation="MRPEDFAVYASYQINAGGLFVGTLKVIRKTDGRLLFPFQGAPVL
                     GPYPSREEAREAAVMHGEQIVASDIAHPED"
     gene            complement(3031..>3558)
                     /locus_tag="VKJ77_03430"
     CDS             complement(3031..>3558)
                     /locus_tag="VKJ77_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006767049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC44356.1"
                     /translation="VAKGLTSSYAPLSGVIVGERVWEVIEKGSQEHGPMGHGWTYSGH
                     PICAAAAIANLDILERENLTQNAADVGTYLGAQLHAAFDQHPLVGEVRQTGMLAALEF
                     MADKPGRKPFDAALKVGPKVSAAALRRGVIARAMPHGDILGFAPPLVTTRADVDEIVG
                     IVREAVDEVATQTIA"
BASE COUNT          694 a         1147 c         1035 g          682 t
ORIGIN      
        1 ctgcccgctc gctgcccgcc acgtccgtcg caagcagttg caagttgcct gaaataacct
       61 gcagcagatt attgaaatcg tgcgcgacgc cgccggtgag cttgccgagc gtctccatct
      121 tttgcgcctg ctgaagcgcg agttcggtac gccgcagcgc gtctgccgcc tcgcgatccg
      181 cggtgatgtc gcgacccacg gcatggatga atcggtcgtc gggcacggcc gtccacgaca
      241 gcgtgacata cgcgccatcc tgccgttgat accggttgac aaacttgaag gtgcggatcc
      301 cctcgctcag ttcgcccaat tcggcaagcg tctcgatccg gtcatcggga tgcacgaact
      361 caaggaatga atggccgata aggttcttct catcccagcc caggatctgc cgccaggctg
      421 gattcaccgc cacgatattc gactggaaat cggcgaccag catcatgtca gtggaaagcc
      481 gccacatgcg gtcccggtcg gcaacgcttt ccgccacctg ctgttcgagc gttctgttca
      541 ggcgctccag ggcgcgtgcc gcggacttct gatcttcaat gtcggtgttc gtcccaatcc
      601 agcggacaat gcgtcccgcg ttgtcgcgaa tcggcagcgc tcgggcgata tgccagcgga
      661 acacgccgtc ggctcgtcga atgcggaact cgcattcata ggtcgtgccc gacgccaccg
      721 cgtgggccca ctgtccggcg gcggcctcca catggtcacg atgaatgatc tcgctccacg
      781 cctggccgtc cagactgccc tgcgccgcgc cgctgtactc gtagacccgg tcgttgaacc
      841 agtcgagttc cccgtcgcgt cgcgccgacc agacctggtt gggcatggcc tgggcgaagg
      901 tgcggaattt ctcctcgctt tcgtggaccg cgcgctccgc gcgcaccttt gcggtggtct
      961 ccaccacgat cgcgatcact gcgatcggca cgccctgctc gtcacgaatg ggcgagtagt
     1021 ccaggttcat ccacacctgc tcgccgcgtc cgtggcggtg cagcgtaagt tcctgatcct
     1081 cgtatcgcag cgttcggccg gccaggacga ccttcatcac gttgtcattg aaatccgcga
     1141 tctcggacca cccttcccgc accttggagc cgagaagctg gggatgccgg ccgccggcga
     1201 aaacggaata ggcgtcgttg tagagcatga cgccatctac accccagagc gtcacgatcg
     1261 ggacaggcga ctgcaaaatc agggcgatag tgccggtcag cgtttttgac cagccttcga
     1321 gaggtcccag tggcgaagtg gaccagtctc tggatgcgat gatcctggcg acctcgccgc
     1381 cgccctccag gaaggcgtga ctcaggccag cggtcggttg tctttcgttc atgtgcgggg
     1441 atcgataagc aacgtccgag ggtacgacgc acctaagcgt tgcagagttt aaaacgtcag
     1501 tagacaggcg attattttac cttccaaaac cccactcgta gagccaatcc gacgcttgcg
     1561 gcacacacat ccagaccgcg gctcccgggg atgattcttg ctgccagcag tctcttggcc
     1621 cggctttccc cgctcccgga tcgcgtaaga ccgaaccccg cacacgtccc tagtgggcgt
     1681 ccttgtcgcg gatcaggctg atctctccat tgcgttcgag cgtagccgtg cgcaccccgg
     1741 acaggtcgtc ggcgcccagt tgctgccgcg ccgtttcgaa caggtcggtt cgcgtaatga
     1801 gcgcagcgga catctgcttc tcgtcgaagc ggccatcccg atacaactct cgttcggcgc
     1861 cgcccaccag ccgctccagc gtcggtgaat gcaggcagcc ccatgcgagc acgcggtgca
     1921 gcacgacaat cgcgagcgag gcgaccaccg tcgggaccgc gggcgaagca cccacaatag
     1981 cgcggctcag cgtcgcgcca agaagtatgg cgacgacata gtcgaacgga gaacgctggc
     2041 cgaacgaacg cctgcccgag attcgaatac agatcaacgc gccaatgaag accgcgaccg
     2101 cgcgagccgc catctgtagc gaatcgaggt ctttgccgct gccgaacact gcgattaggg
     2161 cgttcatgtg ctttcccttt tttgttagtg ggcctctcgt gagtcgaagc acgcccgggt
     2221 tggacacgca tgctggcttg tgttcgtcgg cttggcgctc actgatccgt tgctcttatg
     2281 ccatggaagc atgccgcgtg cgtccagata gcgcggattt tgaacactag aaagaccgcc
     2341 ggacccgatg cattccgcgg tccaccgtca gcctgcatat gtcccaactc ccgagcaaga
     2401 aacgtactgc gagcgcggac tggtaattgc ttaacgttaa gtgttgtgca attgcagtga
     2461 acgtcgtgat gtcctccagc caagaaaaat tgaccgccta agccctcggc cggacacacg
     2521 ccacgcctgt ctacgggcac gattgaaaca cgtacgaagc catgaaaaaa ccgaaaattg
     2581 tcctatccat gacccagata caaagccggg gatcacgcga acacatgcgc cctgaagact
     2641 tcgcggtgta cgcctcgtat cagatcaatg ccggcggatt gtttgtagga acgctaaagg
     2701 ttattagaaa aaccgacggc cgcctcttgt tcccgttcca gggcgcaccg gtgctcggac
     2761 cgtacccttc gcgagaagag gcgcgcgagg cggcagtcat gcacggcgaa cagatagtcg
     2821 ccagtgatat cgctcatccg gaagattgag agaagcgcgc tagccgcgtt tcgcgcgtcg
     2881 tgatgctcga atgctgcgtt gcaatggcaa catggcttga ccgcggcgaa tgcagtcgtg
     2941 tttacctggt taattgcagc atgaaaaaaa gccgccggga caaagccggc ggcctgattc
     3001 gttgacgcct gaaaagagcg tgatgcgacc ttaggcgatc gtctgcgtag cgacttcatc
     3061 cactgcttcg cgcacgatac cgacgatctc gtccacgtcc gcccgcgtgg tcacgagcgg
     3121 cggcgcaaag ccgagaatgt cgccgtgcgg catggcccgc gcgatcacgc cacgccgcaa
     3181 tgcggccgcc gagaccttcg gcccgacctt caacgctgca tcgaaaggct tgcggcctgg
     3241 cttgtccgcc atgaattcaa gcgcggccag catgccggtc tggcgcactt cacccactag
     3301 cggatgctgg tcgaatgcag catgcaattg cgcgcctaga taagtgccga catcggccgc
     3361 gttctgcgtc aggttctcgc gctcgagaat gtccagattc gcgatggcgg cagccgcaca
     3421 aatggggtgg cccgaataag tccagccgtg tcccatcggg ccatgttcct gcgagccctt
     3481 ctcgatcacc tcccacaccc gttcacccac aatcacgccc gacagcggcg catacgagct
     3541 cgtgagaccc ttcgcgac
//
LOCUS       DATGBK010000233         2595 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_72163, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000233 DATGBK010000000
VERSION     DATGBK010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72163"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..483)
                     /locus_tag="VKJ77_03435"
     CDS             complement(<1..483)
                     /locus_tag="VKJ77_03435"
                     /inference="COORDINATES: protein motif:HMM:NF018435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HMC44357.1"
                     /translation="MSLSGILRSTFSPDLGIDLGTANTVVYEYGNGVVVSEPSVVAYN
                     VADDSIIAVGMAAKELDGRASAKVRVVHPLRGGTISDFRGAHALIETLVDRALQSRPR
                     IAPRIIACVPGCATDIECKAVEEAIKSAGPRTMCFVPQAVAAAVGSGLDIGQTRGVMV
                     V"
     gene            complement(480..1100)
                     /locus_tag="VKJ77_03440"
     CDS             complement(480..1100)
                     /locus_tag="VKJ77_03440"
                     /inference="COORDINATES: protein motif:HMM:NF014591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase"
                     /protein_id="HMC44358.1"
                     /translation="MDQSLEQLDAVALASVSPRRRELLASLGLRVEIVSSTYIEQPLP
                     GISPAELAMAHARGKAAGAAASDHLIIAADTVVDCNGVALGKPADRAEAKAMIEKLSG
                     REHFVHTAFALRSDLRGRTISHRETTRVHFANLDPETIEAYAASGDGLDKAGAYGIQG
                     FAATLVDRIDGDYFTVVGFPLAAFAQALPRLGYRLLPQTRFAKVPA"
     gene            complement(1171..2391)
                     /gene="lysA"
                     /locus_tag="VKJ77_03445"
     CDS             complement(1171..2391)
                     /gene="lysA"
                     /locus_tag="VKJ77_03445"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR01048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HMC44359.1"
                     /translation="MKDAQIGGVPVRELAQTYGTPLHLIDIDEFELEADRFRRAFESR
                     GITVGYAAKAFFCIALAELIAATTLRIDVCSMGELLTAERGGMPAGRLYFHGCGKSAE
                     ELGAIVEGRVAFSVVDSSEELERLARLAHGHSVDIMLRINPGIEVHTHEYMRTGGENT
                     KFGIPLDTIDAIFARISELPQLRLIGLHSHLGSSITDAAPYAANVAVLLGLAERARAA
                     GHPVAELIAGGGMAVEMVPGDPRPIDLDTLAEGLAQTVMGAPYRLAIEPGRALIARSG
                     SALYRVMAIKQQGRRRFVIIDGGMADNPRPALYGALHQLDVLDSEAKAPPQAATLCGR
                     SCENDVLGEVLVPDDLRAGDLVALRTTGAYTYSMASNYNRFGRPPVVFLRDGSHRRVI
                     RGERADDVLRNDLG"
     gene            complement(2388..>2595)
                     /locus_tag="VKJ77_03450"
     CDS             complement(2388..>2595)
                     /locus_tag="VKJ77_03450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44360.1"
                     /translation="RGVVTMPEIETALADLTPALRAKIRVVDLPLVAESATLIRSRLA
                     AGRSVRYLVPEPVYRYIEEWKLYR"
BASE COUNT          502 a          792 c          814 g          487 t
ORIGIN      
        1 gacgaccata acgccgcgcg tttgcccgat atccaagccc gagccgacgg cggctgccac
       61 cgcttgcgga acgaagcaca tcgtacgtgg tccggccgac ttaatggctt cttcaacagc
      121 tttgcattcg atgtcggtcg cgcagcccgg cacgcacgcg atgatgcgcg gggcaatgcg
      181 cgggcgcgac tgcagcgcgc ggtcgacaag cgtttcgatg agcgcatgcg cgccgcgaaa
      241 atctgaaatc gtgccgccgc gcagcggatg aacgacgcgc accttggctg aggcccggcc
      301 atcgagctct tttgcggcca tcccgacggc gataatcgaa tcgtcggcca cgttgtaagc
      361 gacgaccgac ggctcgctca cgacaacccc gttgccgtac tcgtacacca ccgtgttcgc
      421 cgtgcccaaa tcgatgccca aatcggggct gaatgtcgag cgaaggatac ctgagagact
      481 catgccggca ctttcgcaaa gcgtgtttgg ggcagcaatc gatagccaag gcgcggtagc
      541 gcctgggcaa aggccgcgag cggaaagccc acgacggtga aataatcgcc gtcgatgcgg
      601 tcgacgaggg tggcggcaaa gccctgaatg ccgtacgcac cggctttgtc gaggccatcg
      661 ccgctggcgg cgtaggcctc aatcgtttcc ggatcgaggt tggcgaagtg cacgcgggtg
      721 gtttcccggt gggaaatcgt gcgaccgcgc aggtcgctgc gcagcgcaaa cgccgtgtga
      781 acgaagtgtt cgcggccact gagcttttcg atcatggctt tggcctcggc ccggtcggcg
      841 ggcttcccga gcgccacacc gttgcaatcg acgaccgtat cagcggcaat gatgagatgg
      901 tctgacgcgg ccgcaccggc tgctttgccg cgggcgtgcg ccattgccag ttcggcgggc
      961 gagatgccgg gcagcggttg ttcgatatac gtgctgctaa caatctcgac gcgcaaacca
     1021 agcgacgcga gcaattcgcg ccgtctggga gaaacgctgg ccagcgcgac tgcgtcgagc
     1081 tgttctaatg attgatcgat actacgattc tatggtgctt ctgcgtagcg cgcaagcaaa
     1141 gccgtgaaaa taatcgaaat tcgcgcgttt ttagcctaaa tcgttgcgca aaacatcatc
     1201 cgctcgttcg cctcggatga cgcgccggtg cgatccgtcg cgcaaaaaaa caaccggcgg
     1261 acggccaaaa cgattgtagt tgcttgccat gctgtacgtg tatgcgcccg tcgtccgtaa
     1321 cgcaacaaga tcgccggcgc gcaaatcgtc gggcaccagc acttcgccca acacgtcgtt
     1381 ttcgcacgaa cggccgcaca atgtggccgc ctgcgggggc gctttcgcct cggaatcgag
     1441 gacgtcgagc tgatgtagcg cgccgtaaag tgcgggtcgc gggttgtccg ccatgccgcc
     1501 gtcgatgatg acgaatcggc ggcggccctg ctgtttgatc gccatgacgc gatagagggc
     1561 cgaacccgag cgggcgatca aggcccggcc cggttcaatc gctaggcgat acggcgcgcc
     1621 catgaccgtt tgggcgaggc cttcggccaa ggtgtccagg tcgatcggtc gcgggtcgcc
     1681 gggcaccatt tcaacggcca ttccgccgcc ggcaatcagc tcggcaactg ggtggccggc
     1741 ggcgcgtgcg cgctctgcga ggcccagtaa aacggcaacg tttgcagcgt acggcgcggc
     1801 atcagtgatg ctcgatccga gatgcgaatg cagaccgatt aaacgcagtt gcggcagttc
     1861 gctgatgcgc gcgaatatcg cgtcgatcgt atcgagcgga atgccgaact tcgtgttttc
     1921 gccacccgtg cgcatgtact cgtgcgtgtg cacttcgatg ccgggattga tgcgcagcat
     1981 gatatcgacg ctgtggccgt gcgctaaccg cgcaaggcgt tcgagttcct cgctgctgtc
     2041 gacaacgcta aatgcaacac ggccttcgac aatcgcgcca agttcctcgg cgctttttcc
     2101 gcagccgtga aagtacaagc gtccggcggg cattccaccg cgttctgccg tcagcaattc
     2161 gcccatcgaa cacacgtcga tgcgcaaggt cgtggccgcg attaattcgg ccagtgcgat
     2221 gcagaagaac gctttggctg catatccgac cgtaatgccg cgcgattcga acgcccgccg
     2281 aaaacgatcg gcctccagct cgaattcatc aatgtcgatc agatgaagcg gcgtgccgta
     2341 cgtttgcgcg agttcgcgta ccggtacgcc gccgatttgg gcgtccttca tcggtagagt
     2401 ttccattctt cgatgtatcg gtacacgggc tcgggaacta aatagcgcac gctgcgtccc
     2461 gccgccagac gcgagcggat cagggtcgcg gattctgcga ccagcggtaa atcgacaacg
     2521 cgaatttttg cccgtaacgc gggcgtgaga tcggccagcg cggtttcgat ttccggcatc
     2581 gtgacaacac cgcgg
//
LOCUS       DATGBK010000234         1955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_26170, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000234 DATGBK010000000
VERSION     DATGBK010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26170"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1955)
                     /gene="ppc"
                     /locus_tag="VKJ77_03455"
     CDS             complement(<1..>1955)
                     /gene="ppc"
                     /locus_tag="VKJ77_03455"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HMC44361.1"
                     /translation="GDEVFAVVETIRQTAVKFRREEDNEASQTLEKRLKSLSPEQTVS
                     VVRAFSYFSHLANIAEDRHHNRRRRIHALAGSTPQAGTMAYAIERLKASPNEKNAKSA
                     KATLQKFFDNALIVPVLTAHPTEVSRKSILDAQHEVARLLAERDQELTARERAHNEAM
                     LRSRVTSLWQTRMLREARLTVADEIENALSYYHATFLEEIPALYADIEAALAEHGLPA
                     RLPPFLQMGSWIGGDRDGNPNVTAPTLVHAITRQATVIFEHYLEQVHKLGAELSVSHL
                     LAGASDALKTLADASPDSSPHRIDEPYRRALIGVYARLVASADERLGRGLVAARSRHP
                     AKPYASAAEFAADLNVLIESLASHHGEYLSAPRLSPLARAAEVFGFHLASIDLRQSSD
                     IHEAVIAELLARAGVQDDYSALPEADKIALLLSELAQPRPLRLPYFDYSDLAKSELGV
                     LETARVTREKFGTRAVRNYIISHTETVSDLLEVMLLQKETGLLQGRLGHAKDPAHDGL
                     MVIPLFETIADLRNAPHIMGDFFALPGVDKLVELQGGEQEVMLGYSDSNKDGGFLTSN
                     WELYRAELALVALFKQHKTTLRLFHGRGGTVGRGGGPTYQAILSQPPGTVDGQIRTTE
                     QGEVIASKFGNAEIGRRNLELVVAATL"
BASE COUNT          347 a          630 c          593 g          385 t
ORIGIN      
        1 gagcgtggcg gccaccacga gttcgagatt gcgacgcccg atctccgcat tgccgaactt
       61 gctcgcgatc acttcgcctt gctcggtcgt gcgaatctgg ccatcgaccg tgcctggcgg
      121 ttgcgacaag atcgcctgat aggtcgggcc gcctccgcga ccgaccgtac ccccacgacc
      181 gtggaagagc cgcaacgtgg tcttgtgctg cttgaacaaa gcgactagcg ccagttccgc
      241 ccggtacagc tcccagttcg acgtaagaaa gccgccgtcc ttgttgctgt cggaataacc
      301 gagcatcact tcctgctcgc cgccttgcag ttcgaccagc ttgtccacgc ccggcagcgc
      361 gaaaaaatcg cccatgatgt gcggcgcatt gcgcaagtcg gcgatggttt cgaacagcgg
      421 aatcaccatc aggccatcgt gcgcggggtc tttggcatgt cccagccgtc cctgcagcaa
      481 gcccgtttcc ttctgcagca gcatcacttc cagcaagtcg ctgaccgttt ccgtgtgcga
      541 aatgatgtag ttgcgcaccg cgcgcgtacc gaatttctca cgcgtcaccc gtgccgtttc
      601 cagcacgccg agttcgctct tggccagatc ggaatagtcg aaatagggca ggcgcagcgg
      661 ccgtggttgt gccagttcgc tcagcagcag cgcgatcttg tcggcttccg gcagcgctga
      721 gtaatcgtcc tgaacgcccg ctcgcgcaag cagttccgcg atcaccgctt cgtggatatc
      781 cgagctttgg cgtaagtcga tgctcgccag atggaagccg aacacttctg cggcgcgcgc
      841 cagcggcgac agccgcggcg ccgacaaata ctcgccgtga tgcgaggcca acgattcgat
      901 cagcacattc aggtcggctg caaattccgc cgccgatgca tacggtttcg ccggatggcg
      961 gctacgcgcc gcgaccagcc cgcgtccgag ccgctcgtcg gcgctcgcca ccagccgtgc
     1021 atacacgccg atcaacgcgc gccggtaagg ttcatcgata cgatgcggcg acgaatctgg
     1081 cgaagcatca gcaagcgtct tcagcgcgtc gctcgcgccg gccagcaaat gcgacaccga
     1141 caattccgcg cccagcttgt gaacctgctc gagatagtgt tcgaaaatca ccgtggcctg
     1201 gcgcgtgatg gcgtgcacga gcgtgggcgc ggtgacgttg gggttcccgt cgcgatcccc
     1261 gccaatccag ctacccattt gaaggaacgg cggcaggcgc gcgggcaggc cgtgctcggc
     1321 cagtgcggct tcaatgtcgg cgtaaagcgc ggggatttct tcgagaaacg tcgcgtggta
     1381 gtacgagagc gcgttttcga tttcatcggc aacggtcagg cgggcctcgc gcagcatccg
     1441 cgtttgccag agcgacgtaa cgcgcgagcg cagcatggcc tcgttgtgcg cccgttcgcg
     1501 cgcggtcagt tcctgatcgc gctcggccag cagccgcgcg acctcgtgct gcgcgtccaa
     1561 aatgctcttg cgcgagactt cagtcgggtg agcggtcagc acgggaacga tgagcgcgtt
     1621 atcgaaaaat ttttgcagcg tagctttcgc cgacttcgca ttcttctcat tcgggctcgc
     1681 cttcaggcgt tcgatggcat aggccatcgt gccggcctgc ggggtcgaac cggcgagcgc
     1741 gtgaatccgc ctgcgccggt tgtgatgccg gtcttccgcg atattcgcga gatgcgaaaa
     1801 gtagctgaac gcgcgcacga cactcaccgt ctgctcgggt gagagcgatt tcaagcgctt
     1861 ttcaagcgtc tgcgacgcct cgttgtcttc ttcgcgacga aatttcacag ccgtctggcg
     1921 aatcgtttcc acgacagcga acacctcgtc gcctt
//
LOCUS       DATGBK010000235         3333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_141967, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000235 DATGBK010000000
VERSION     DATGBK010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3333
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141967"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..683)
                     /locus_tag="VKJ77_03460"
     CDS             complement(<1..683)
                     /locus_tag="VKJ77_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacetylase"
                     /protein_id="HMC44362.1"
                     /translation="MKNLPNYASRTLSNPLYDFVERHPRLFVLSGAGISTESGIPCYR
                     NTEGQRTGRAPILLKDFMGSEFARKRYWARSMIGWPLVAGAAPNAAHLAVARLERLGL
                     FERLVTQNVDGLHTSAGNTDVIELHGNIGRVRCMECGDETSRAALQPRLIADNPSFVG
                     LAALPVADGDAQLEGYDFEVFRTPSCMRCGGLLKPDVVFFGEGVPRTRVDAAAAALEQ
                     ADAMLVLGSS"
     gene            complement(819..2117)
                     /locus_tag="VKJ77_03465"
     CDS             complement(819..2117)
                     /locus_tag="VKJ77_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014895865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44363.1"
                     /translation="METQCAIPLPPAAQRNLGASHRWKVLGVGVAANISFSAAAAGIP
                     TTAVWLRADYHLSNAALGLALGAMGLGAALSELPWGVATDRWGDRPILLTGLATTAAA
                     LLSMMLFVVPSHAAVPGLLWLVMSMCLVGLVGGSVNGSSGRAVMSWFQEGERGLAMSI
                     RQTAVPLGGGLGALILPWLASTGGFRPVFGVLAAMCAVSGMLTWLWLHEPPKAPVAAH
                     AGSNASSPMPAAPAVGPLRDGMIWRVVAGIGILCVPQFAVVTFATVFLHDFGHVGIAG
                     ITATMVSVQLGAMIMRVASGRFTDKRGNRRAYLRGSTLVAVASFVLLGVVVGSGHRLP
                     EALLVVLIAFAGICVSAWHGVAYTELATLAGKERAGTALGMVNTAVYLGLFLTPLCIP
                     HLLAMGSWGVVWLAAALCALVAYPLFPKPVKLVTLVARAS"
     gene            2225..3145
                     /locus_tag="VKJ77_03470"
     CDS             2225..3145
                     /locus_tag="VKJ77_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011658080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44364.1"
                     /translation="MSQTNFDVASLRTFVVGMELGSFAKAADRVGRSTSAVSAQIKKL
                     EEQSGAPLFKKAGRNLALTEAGETMLRFARRLVDLNDEAAVAVRGPDLEGWIRLGLQE
                     DFGEVMLPDVLGRFSRAHPKVRIEARVARNTELLGRIESNDLDLALIWDDALSSSLEL
                     PGSDRHEMIAEPAMCWIGSSTLPWNPDSAEPLPLVAFDRACLFFSAATEALDRANIRW
                     RVAFTSPSLSGLWAAAAAGLGLTVRTRYGLPASVSAFNGRELGLPSLPSLQLSLVRAS
                     ATPTPPVQQLAALILESVRGGSASLDRIAA"
BASE COUNT          694 a         1116 c          994 g          529 t
ORIGIN      
        1 gacgaaccga gcacgagcat ggcatcggcc tgctcgagcg cggcagccgc cgcgtctacg
       61 cgggtccgtg gcacgccttc gccgaaaaac accacgtcag gcttgagcag accgccgcag
      121 cgcatacagg acggtgtgcg gaaaacctcg aagtcgtaac cttcgagttg cgcatcacca
      181 tccgccaccg gcaacgcagc cagaccgacg aagctcgggt tatcggcgat aagtcgcggc
      241 tggagcgccg cgcgtgaggt ctcgtcaccg cattccatgc accgcacccg gccgatattg
      301 ccgtgcaatt cgatcacgtc cgtattgccc gcactcgtat gcagtccgtc gacgttttgc
      361 gtgacaagcc tttcgaacag acccaggcgc tcgagccggg caaccgcgag atgcgcggca
      421 ttcggtgcgg cgcccgcgac caatggccag ccaatcatgc tgcgggccca atagcgtttg
      481 cgcgcaaact ccgagcccat gaagtctttc agcagaatag gcgctcgacc ggtacgctgc
      541 ccttcggtat tccggtagca aggtattccg gattccgtac taattccagc accggacaaa
      601 acgaacagcc gcggatgccg ttcgacgaaa tcgtagagtg ggtttgaaag cgttcgagac
      661 gcatagttcg gcagattttt catcttcgga atagtagcgg caacacgctt tttctgctgg
      721 agcgcggaaa cgacccggcg gtttgcacca aagcggtaat ctggatcgtc gacatacatc
      781 cgccctccgc aaaccgaccg agcccgcaac ccaacccctc acgacgcccg cgccacgagg
      841 gtcaccaact tcaccggttt cggaaacagc ggataggcca ccagcgcgca aagagccgca
      901 gcgagccaga ccacacccca tgatcccatc gcgagcaaat gcggaatgca cagcggcgtc
      961 aggaacaagc cgagatacac ggcagtattg accatgccaa gcgccgtgcc cgcgcgctcc
     1021 ttgccggcca gcgtcgcgag ttcggtgtag gccacgccgt gccacgccga cacgcagatt
     1081 ccggcgaacg cgatcagcac aacaagcaac gcctcaggca gccggtgacc cgaccccacc
     1141 acaacgccca gcagcacgaa cgacgccact gcgaccagcg tcgatccgcg cagatacgcc
     1201 cgccggttgc cgcgtttatc ggtgaaacga ccgctcgcta cgcgcatgat catcgcgccg
     1261 agctggacgc tgaccatcgt cgcagtaatg cccgctatgc cgacatgccc gaagtcatgc
     1321 aaaaacacgg tggcgaaagt cactacggcg aactgcggaa cgcacaagat gcctatgccc
     1381 gccacgacac gccaaatcat cccgtcgcgc agcggaccga ccgctggcgc cgccggcata
     1441 ggcgaacttg cgttcgaacc ggcatgcgct gcgacaggcg cctttggcgg ctcatgcagc
     1501 caaagccaag tgagcatgcc cgagaccgcg cacatggccg ccagcacccc gaagaccggg
     1561 cggaatcctc cggtagaggc aagccagggc aggatcaacg cgcccaggcc gccgccaagc
     1621 ggcacggcgg tctggcgaat gctcatggca agaccccgtt cgccttcctg gaaccagctc
     1681 atcaccgccc gcccgctgga tccgttcacg ctcccgccga ccagaccgac caggcacatc
     1741 gacatcacca gccacaacaa acccggcaca gccgcatgcg acggcacgac gaacagcatc
     1801 atggagagca acgcggcggc ggtcgtggcc aacccggtca gcaagatggg acggtctccc
     1861 cagcgatcgg tcgcaacacc ccacggcaac tccgagagcg ccgcgcccag gcccatggcc
     1921 ccaagcgcca acccgagcgc tgcgttgctg aggtgataat ccgcgcgcag ccagacggcg
     1981 gtcgtgggaa tgcccgcggc ggcagccgaa aaactgatgt tcgcggccac gccgacgccc
     2041 agcaccttcc accggtgcga cgcgcccaaa ttgcgctgag ccgctggggg caaggggatt
     2101 gcgcattgag tttccatgct tgtctctctt gaatgctttc gatgcaccca gtgtcgcgga
     2161 ttactatcat cctgaatatc aagtaatatc gaaacaatga ttcgataaaa caggacaatt
     2221 agccatgtcg cagaccaatt tcgatgtcgc ttcactgcgg accttcgtgg tcggcatgga
     2281 gctgggaagc ttcgccaagg cggcggaccg agtcgggcgc tcgacctcgg ccgtcagcgc
     2341 gcagatcaag aaactggagg agcagtcagg cgcgccgctg ttcaagaaag ccgggcgcaa
     2401 cctggcgctg accgaagcgg gagaaaccat gctgcggttc gcgcgcaggc tggtcgatct
     2461 gaacgacgaa gccgctgtcg ccgtgcgcgg ccccgacctc gaaggctgga tcaggctcgg
     2521 gctgcaggag gatttcggcg aagtcatgct gcccgacgtc ctcggccggt tctcgcgcgc
     2581 gcatccgaaa gtgcggatcg aggcacgggt cgcgcgcaat acggaactgc tcggccggat
     2641 cgaatcgaac gacctcgacc tcgccctgat ctgggacgac gcgctttcat catcccttga
     2701 actaccaggc agcgaccggc acgagatgat cgccgagcct gcaatgtgct ggatcggttc
     2761 atcgaccttg ccgtggaatc ctgattcagc agaaccgctg ccgctggttg cgttcgatcg
     2821 cgcctgcctg tttttcagcg cggccaccga agcgctcgat cgcgcgaaca tccgttggcg
     2881 ggtagcgttc acgagcccga gcctctccgg cctgtgggcc gccgcggcag caggccttgg
     2941 actgaccgtg cgcacgcgct atggcttgcc cgcttccgtc agcgcgttca atggccggga
     3001 actgggattg ccctcgctgc cgtcgctgca actgtcgctc gtacgcgcgt cggccacgcc
     3061 cacgccgccg gtgcagcagc tcgcggcgct catcctcgaa tccgtacgcg gcgggtcggc
     3121 atcgctggac cggatcgcgg cgtgagtgtt gtttcgaatg tttcgatgtt tcgtccgtga
     3181 gagaaagaaa gtagaacgcc ttcacgcatc gcctgatgtt cacgcccaac ggcccgcttt
     3241 ttgctgaagg ctagagaacg actgaaggga gtgcgacatg gccggttcca tgcagcaagc
     3301 agcaaaattc gacgatcttc gagaggatcg cgg
//
LOCUS       DATGBK010000236         3490 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_49372, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000236 DATGBK010000000
VERSION     DATGBK010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3490)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3490
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49372"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1014)
                     /locus_tag="VKJ77_03475"
     CDS             complement(<1..1014)
                     /locus_tag="VKJ77_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HMC44365.1"
                     /translation="MSRRMSQITLPRSLFARNIALLVALVIVSQISSLSVLFHFVQRP
                     RIERAAETFAIYVQTLDDLLKTTAPDAQKRLAVRFEAKREFPVGAASEPAVTWRNFYR
                     TYQRDVFIDTLRQHLPAGMEVQWQTEGEQRLWIRAHLGPEPYWIALPVPEAAHNDGML
                     SAIALSLALAALAIVTAYLIQRHINRPLRDLSDAARRLSSGEAPQALRVDGPTEIAQV
                     SVAFNQMVHALQEADATRSLMLAGISHDIRTPLTKLRLAVAMTTPSEEHDELAVSTDH
                     YLDQIDAILQQFMDYAGSGTREVAEVSDLNALVSSLAADFAGLGHVFELTLGDLQPFP
                     FRPI"
     gene            complement(1011..1724)
                     /locus_tag="VKJ77_03480"
     CDS             complement(1011..1724)
                     /locus_tag="VKJ77_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019447174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC44366.1"
                     /translation="MESQPKIIVLDDEAELRNMLQRFLSSHGFEVRVVADSKRLDRYL
                     QREPFDLLILDLMMDQEDGLSVCRRLRAEGQTLPILILTAKGDPVDKVIGLETGADDY
                     LAKPFLPRELVARVRALLRRQKIAAGEPVLRSQTVRFGDYCLDLGKQRLYKSGEVFEI
                     HSTQMLLLNALGASPNRPVSRDNLIARSRGRDHDALDRSIDVQVLRLRQIVEADPSKP
                     RFVKTVWGVGYMLVAEVES"
     gene            complement(1988..2293)
                     /locus_tag="VKJ77_03485"
     CDS             complement(1988..2293)
                     /locus_tag="VKJ77_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007734774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HMC44367.1"
                     /translation="MKNKIAIFVLSIAASFASTGVMAQTAPQATVSPQRMERAMQQLQ
                     ARFAAANTTHDGKLTQTQAAQGMPMVAQNFDQIDTQKAGYITLPQIEQFMQQRATSH"
     gene            2711..3031
                     /locus_tag="VKJ77_03490"
     CDS             2711..3031
                     /locus_tag="VKJ77_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44368.1"
                     /translation="MNIRLISASAATALGLMLTTGAEARTFVVYAGPAVVYVPPPRPV
                     YYAVPVQPSYVAVVRAAPVVAVPVPAPKPVVYVPVQGSYAAVPVANVRYAQPVVVVPA
                     AGMN"
BASE COUNT          677 a         1003 c         1074 g          736 t
ORIGIN      
        1 gatcggacgg aacgggaacg gttgcaagtc gccgagagtg agttcgaaca cgtgaccgag
       61 acccgcgaag tcggcggcga gactgctcac aagcgcattc agatcactga cctcggccac
      121 ctcccgcgtg ccgctgccgg catagtccat gaactgctgg agaatggcgt cgatctgatc
      181 gagataatga tccgtcgata cggctagttc atcgtgctct tccgatggtg ttgtcatggc
      241 caccgcgaga cgcagcttgg tcaatggcgt gcggatatcg tgggagatac cggcgagcat
      301 cagcgaacgg gtcgcatcgg cttcctgcaa cgcgtgcacc atctggttga aagcgacgct
      361 gacttgcgcg atctcggtcg gtccatccac acgcagcgct tgcggtgcct cgcccgagct
      421 caagcggcgt gctgcgtcgg agagatcacg caacggccgg tttatgtggc gctggatcag
      481 gtaggcggtg acgatggcaa gcgcggcgag cgcaagcgac agagcgatag ccgagagcat
      541 gccgtcgttg tgcgcggctt caggaacggg cagggcgatc cagtacggtt cgggaccgag
      601 atgcgcgcgt atccaaagcc gttgctcgcc ttctgtttgc cattgaacct ccatgcccgc
      661 gggcaaatgc tggcgcaagg tatcgataaa aacatcgcgc tgataagtcc gatagaaatt
      721 acgccatgtc accgcaggtt ccgaggcggc gccgacaggg aattctcgct tggcttcgaa
      781 gcgaaccgcg agtctttttt gcgcgtccgg cgccgtggtc ttcaacaggt catccagcgt
      841 ttgcacgtag atcgcgaaag tctcggcggc gcgttcgatc cgcggtctct ggacgaagtg
      901 gaataatacg cttaacgaac taatttgact gacgatgacc agcgccacca gcagcgcgat
      961 attacgtgcg aacaacgagc gcggtagcgt gatctggctc atccgccggc tcacgattcg
     1021 acttccgcga ccagcatgta gcccacgccc cacaccgtct tgacgaagcg cggtttcgac
     1081 ggatcggctt ccacgatctg ccgcagccgc agtacctgca catcgatact gcgatcaagc
     1141 gcatcgtggt cgcgcccgcg tgagcgggcg atcaggttgt cgcgactgac gggccggttc
     1201 ggtgaggcgc ccaacgcgtt caatagcagc atctgggtcg aatgaatctc gaacacctcg
     1261 cccgacttgt acagccgctg tttgccgaga tcgaggcaat agtcgccgaa acgcacggtc
     1321 tgcgacctga gtacaggttc gcctgcagca atcttttggc gtctcagcag cgcgcggacg
     1381 cgtgcaacga gttcgcgcgg caggaacggt ttggcgaggt aatcgtcggc gccggtttcg
     1441 aggccaatga ccttgtcgac gggatcgcct ttagccgtga ggatgagaat gggcagcgtc
     1501 tggccttcgg cacgcaagcg ccggcagacc gacagcccat cctcctgatc catcatcagg
     1561 tcgaggatca gcaaatcgaa gggctcgcgc tgcagatagc gatcaagccg cttgctgtcg
     1621 gcgactactc ggacttcgaa cccgtgactg ctcaggaaac gctgcagcat gttgcgcaac
     1681 tcggcttcat cgtcgagaac gatgatcttc ggctgactct ccattcatgc ctccctcgat
     1741 gcgtcggacg gttggggctt tgtgacgttc ggcaagccgc tgtagcagtg ctgggccggc
     1801 cggctttcaa acgggtgttg cacgttcacc tcccgctgct tcaagcaggg gcctaccgtc
     1861 acgcaacggg cgagcgtcag gatgggcgcc acgccggcca caggaagaag gcaaagcggt
     1921 cctcagttca aagacaatag tccagtaagc acagaacaaa aagcttccac ctattgtcgc
     1981 gtcaccgtca gtgcgatgtc gcgcgctgct gcatgaattg ctcgatctgc ggcagcgtga
     2041 tgtagccggc tttttgcgtg tcgatctgat cgaagttctg cgcgaccatc ggcatgcctt
     2101 gcgctgcttg cgtctgggtc agcttgccgt cgtgcgtggt gttggctgcg gcaaagcgcg
     2161 cctgcaattg ctgcatcgcg cgttccatgc gttgcgggct gaccgtggct tgcggcgcgg
     2221 tttgtgccat gacgcccgtg ctggcgaagg aggcggcgat agacaggacg aaaatggcga
     2281 tcttgttttt catggggttc tccagtgaat tccagtgaat gaagggttcg tttgccattg
     2341 gttgcgggtg tttgcgtctt gccgtttgga gcggccccga ccaatggcag accgaagctt
     2401 atcgatctgc accggaaaac gaatgacaaa ccggctacga atcatgtcgc cgcatgtcat
     2461 gcatcggatc cgataactaa gcatctgctc cctacaaaaa tgcttgcccc gatgtctgaa
     2521 ggccgataac ccgtgacatc gaatgaaata tgttttgacg tggttttcga cctcgatttg
     2581 cgtatctttc ggtggtcggc gctacgagcg cttcaacgga ttcgcaaggc tctgaagcaa
     2641 tgcgaaccac ccggcggaac ggcttccaaa gcgaagacga gacccgccga tcgaatcgaa
     2701 tggaatccat atgaatattc gtcttatcag tgcatccgcc gccaccgcac ttggcctcat
     2761 gctcaccact ggcgctgaag cacggacatt tgttgtctac gccggaccgg ctgtggttta
     2821 tgtaccgccg ccgcggcctg tttactacgc cgtcccggtt cagccgagct atgtcgcggt
     2881 ggtgcgcgcg gctcctgttg ttgcggtccc cgtgccggcg ccgaaaccag tggtctatgt
     2941 gccggtgcaa ggcagctacg ctgccgtgcc tgtcgcgaac gtaaggtacg cacaacccgt
     3001 cgtagtggtt ccggccgccg ggatgaactg agctagtgga gttttcgact cagtagccgt
     3061 gattggcgta gcgaggacta ctgggtaatg aggtgaagag cacgttcgcc tggatgcggt
     3121 tgacgcacta tcaaagagcg tgggacgtgc gtctgcgtgc ggagtttatt cctctggagg
     3181 agagatctat gtgcgttcat tcgatgtgtt ctctgtcgcg gcggcgcgtt ctgttcgcgg
     3241 gcgcggcatc cgcggccctc gctgcatttt cattgcacga tgcatgtgca gatgaacctc
     3301 ctacgagacc tggtcccaat gcgatcgcac cctcggatgc gcttgctcgc ctgctgcagg
     3361 gcaacgagcg atatgccgct aatacccgcg caaacaagga ttattccgct ggccgggcgg
     3421 cacgagtcac ggcgcaatat cccatcgcag cgattcttgg ttgcgcggat tcaagagttt
     3481 cgcctgagct
//
LOCUS       DATGBK010000237         1650 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_118762, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000237 DATGBK010000000
VERSION     DATGBK010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118762"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1534)
                     /locus_tag="VKJ77_03495"
     CDS             complement(<1..1534)
                     /locus_tag="VKJ77_03495"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC44369.1"
                     /translation="MLMEQIPAVLWSADRLGHFVSLSGAGLSALHLRETDMLGRACSS
                     LLGGDEAVASLVSVFAGTPVQFESASGKHWLRHHVEPLRGSDGVVIGAVGVTLDISEI
                     KQTQDKLEIAARRDALTGLPNRFSLEESLADALIGTPSAHEPRVSAVLFIDLDRFKNI
                     NDTLGHRMGDEVLRVVADRLRASIGAGDIIARPGGDEFIVALRSVNSPDDVGAIAARL
                     LRRFNEPIVFDGHQLFVTASIGAALCPHHGSTAEELIKNADAAMYRAKAAGRGTFAFY
                     DTAIEADARERLKIENDLRGALLREELNVLYQPIIDVSTGRIMACEALLRWTHPVRGD
                     VAPATFIGIAEESGLIADITRFVLRRACTFGALVRETRPDFRITDNLSPTDLRETDIV
                     SIVREQLMRSGLAAEGLEIEVTENVLLDDVAIAALNALRTLGVLIAVDDFGIAYNSLL
                     YVKRLPITSLKIDRSFVRDVVRDHFDQAIVKAIVTLGTTLGLTVIAEGIESKAQWDYV
                     NEL"
BASE COUNT          354 a          506 c          477 g          313 t
ORIGIN      
        1 caagctcgtt cacgtagtcc cactgcgctt tcgattcaat gccttcggcg atgacggtta
       61 gaccgagcgt cgtgccgagc gtgacgatcg ctttgacgat tgcctgatcg aaatgatcgc
      121 gcacaacgtc gcgcacgaac gaccggtcga tcttgagcga cgtgatcggt aagcgcttca
      181 cgtacagcag tgaattgtat gcgatgccaa aatcgtccac cgcgatcagt acgcctagcg
      241 tgcgcagcgc gttgagggct gcaattgcca catcatcgag caacacgttt tcggtaactt
      301 caatttccag gccttcggcc gcaaggccgg accgcatgag ttgctcgcgt acgatcgaga
      361 cgatatcggt ttcacgtaaa tccgtcggcg acaggttatc ggtgattcgg aagtccggtc
      421 gcgtctcacg caccaatgcg ccgaacgtgc aggcgcggcg cagtacaaag cgggtaatgt
      481 ctgcgatcaa gccgctctcc tcggcaattc cgataaacgt tgcgggcgcg acgtcgccgc
      541 gcacggggtg cgtccagcgc aacagcgcct cacacgccat gatgcgcccc gtcgaaacat
      601 cgataatcgg ctgatagagc acgttgagtt cttcgcgtag aagcgcgccg cgcagatcgt
      661 tctcaatctt caggcgctcg cgcgcatcgg cttcaatcgc cgtatcgtaa aaggcgaatg
      721 ttccgcggcc cgccgccttc gcacgataca tcgcggcatc cgcgttctta atcaactctt
      781 cagcggttga accgtggtgc gggcacagcg ccgctccgat cgaagcggta acaaacagtt
      841 ggtgtccgtc gaatacgatc ggttcgttga agcggcgcag caaacgcgcg gcgatcgcac
      901 caacgtcatc gggtgagttg accgaacgca gtgcaacgat aaattcgtcg ccgcccgggc
      961 gcgcgataat atcgcccgct ccgatgctcg cgcgaaggcg gtccgcgacg acgcgcaata
     1021 cttcatcgcc catgcggtgc ccgagagtat cgttgatgtt cttgaagcgg tccaggtcga
     1081 taaacaagac cgccgagaca cgcggttcgt gcgcggacgg cgtaccgata agggcatccg
     1141 cgagcgactc ctcgagcgaa aagcgattcg gcagacccgt gagagcatcg cggcgggccg
     1201 caatttcaag cttatcttgg gtttgcttga tttcagagat atccaaggtg acaccgactg
     1261 cgccgataac gacgccgtcc gagccgcgca acggctcgac gtggtggcgc aaccaatgct
     1321 tgccgctggc ggactcgaat tggacgggcg tgccggcaaa caccgacacc aacgacgcaa
     1381 ccgcttcgtc gccgcccagc agtgacgagc acgcgcggcc gagcatgtcg gtttcgcgta
     1441 aatgcaacgc cgataggccc gcacccgata atgaaacgaa gtggcccaag cgatcggcgc
     1501 tccataagac cgcgggaatt tgttccatca acatgcgcaa acggctctcg ctctcgagaa
     1561 gccgtgattc cgcaccctta cgaacggtca cgtcccgcaa gtacacgatc gtttcgttaa
     1621 gcgccggttt gatgcgaatt tctatccacc
//
LOCUS       DATGBK010000238         2515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_26244, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000238 DATGBK010000000
VERSION     DATGBK010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26244"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1220
                     /gene="oxc"
                     /locus_tag="VKJ77_03500"
     CDS             <1..1220
                     /gene="oxc"
                     /locus_tag="VKJ77_03500"
                     /EC_number="4.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008949 - oxalyl-CoA decarboxylase
                     activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0033611 - oxalate catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="oxalyl-CoA decarboxylase"
                     /protein_id="HMC44370.1"
                     /translation="YLDLPAKLLSQTIDAVKGKQSLVRVVDAAPRQLPAPESVKRALD
                     VLKGAKRPLILLGKGAAYAQADAQIRELVEKSGIPYLPMSMAKGLLPDTHEQSASAAR
                     SFVLQEADVVLLIGARLNWLLSHGKGKTWGAAPKQFIQVDISPTEIDSNVAIAAPVIG
                     DIGSCVSALLGGMDASFPKPSAEWTGAISERKNKNLEKMAATLAKNPSPMNFHSALRA
                     IRDVLKTRPDINVVNEGANTLDYARSIIDMYEPRKRFDSGTWGIMGIGMGFAIGAAVT
                     SGKPVVAIEGDSAFGFSGMELETICRYDLPVCTIVFNNNGVYRGTDVNPTGGKDVAPT
                     VFVKGARYDKMIEAFGGVGRHATTPEELTTALQEAIASGKPTLINAVIDEAAGTESGR
                     LTNLNPQSTAMKK"
     gene            1341..>2515
                     /gene="frc"
                     /locus_tag="VKJ77_03505"
     CDS             1341..>2515
                     /gene="frc"
                     /locus_tag="VKJ77_03505"
                     /EC_number="2.8.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013953330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033608 - formyl-CoA transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA];
                     GO_process: GO:0033611 - oxalate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyl-CoA transferase"
                     /protein_id="HMC44371.1"
                     /translation="MSKPLEGIKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDV
                     TRTQLRDIPDVDALYFTMLNSNKKSLTLDTKKPEGKEVLEKLIKESDVMVENFGPGAL
                     DRMGFPWHTIKELNPKMILASVKGFSDGHHYDDLKVYENVAQCAGGAASTTGFWDGPP
                     TISAAALGDSNTGMHLAIGILTALIGRDKTGKGQKVAVSMQDSVLNLCRVKLRDQQRL
                     DRLGYLEEYPQYPHGEFSDVVPRGGNAGGGGQPGWVLKCKGWETDPNSYIYFTIQGHA
                     WAPICRAIGKPEWIEDAHYNTASARQPHIFDIFKTIEEWLADKTKFEAVDILRKFDIP
                     CAPVLTMKELANDPSLRESGTIAEVQHKERGSYLTVGSPIKFSDMKPEITGSPLLGE"
BASE COUNT          541 a          746 c          808 g          420 t
ORIGIN      
        1 tctacctgga cttgccggcg aaactgctgt cccagaccat cgacgccgtg aagggcaagc
       61 agtccctcgt acgcgtggtc gacgccgcgc cacgccagct tccggcgcct gagtcggtca
      121 agcgtgcgct cgacgtgctc aagggcgcga agcgtccgct catcctgctc ggcaagggcg
      181 cggcttacgc ccaggccgac gcgcagattc gcgagctcgt ggaaaagagc ggcattcctt
      241 atctgccgat gtcgatggca aagggattgc tgcccgatac ccacgagcaa tcggcgtccg
      301 ccgcgcgctc gttcgtgctg caggaagctg acgtcgtgct gctgatcggc gcgcgcctga
      361 actggctgct gtcgcacggc aagggcaaga cgtggggcgc cgcgccgaag caattcatcc
      421 aggtcgacat ctcgccgacg gaaatcgaca gcaacgtggc tatcgcggcg ccggtgatcg
      481 gcgatatcgg ctcgtgcgtg tctgcgttgc tgggcggcat ggatgcgagc ttcccgaagc
      541 cctccgccga gtggaccggt gcgatctccg agcgcaagaa caagaacctg gaaaagatgg
      601 ccgcgacgct ggccaagaat ccgtcgccga tgaatttcca cagcgcattg cgcgcgatcc
      661 gcgacgtgtt gaagacgcgt ccggacatca acgtggtcaa cgaaggggcg aacaccctcg
      721 actacgcccg cagcatcatc gacatgtatg agccgcgcaa gcggttcgac tcgggtacgt
      781 ggggaatcat gggtatcggc atgggcttcg cgattggcgc ggcggtcacg agcggcaagc
      841 cggtcgttgc cattgaaggg gacagcgcgt tcggtttcag cggcatggaa ctcgaaacca
      901 tctgccgcta cgacctgccg gtttgcacca tcgtcttcaa caacaacggc gtgtatcgcg
      961 gcaccgacgt gaacccgacc ggcggcaagg atgttgcccc gacggtgttc gtcaagggcg
     1021 cgcgctacga caagatgatt gaagcattcg gtggcgtagg ccgccacgcc acgacgccgg
     1081 aagagctgac gacggcgctg caggaagcca ttgcgtccgg caagccgacc ctcatcaatg
     1141 cggttatcga tgaagccgcg ggcaccgaga gcgggcgcct gacgaatctg aatccgcaaa
     1201 gcacggcgat gaaaaagtaa tccgcttgga aggtaccggc gggatcggtg gcattggcgg
     1261 ctttgtcaaa atgcgccgcc gatgccgctg caagaacatg agtaacccac ctttagccag
     1321 tgagtcagga gacaggaatc atgagcaagc cactcgaggg aatcaagatt atcgacttca
     1381 cgcacgtgca ggcaggtccc gcctgcacgc agttgcttgc gtggttcggc gccgatgtga
     1441 tcaaggtgga acgcccgggc tcgggcgacg ttacccgcac gcaactgcgc gatatcccgg
     1501 acgtcgacgc gctgtatttc acgatgctca acagcaacaa gaagtcgctc acactcgaca
     1561 ccaagaagcc cgaaggcaag gaagtcctgg agaagcttat taaggaatcc gatgtgatgg
     1621 tggaaaactt cggtccgggc gcgctcgacc ggatgggttt cccgtggcac accatcaagg
     1681 aactgaatcc gaagatgatc ctggcgtcgg tgaaaggctt cagcgacggc caccattacg
     1741 acgacctgaa ggtctacgaa aacgtcgcgc aatgcgcggg cggcgcggca tcgaccacgg
     1801 ggttctggga cggtccgccg accatcagcg cagcggcgct aggcgacagc aacaccggca
     1861 tgcacctggc catcggcatc ctgacggcgc tgattggtcg cgacaagacg ggcaagggac
     1921 agaaggtcgc ggtatccatg caggacagcg tgctcaacct gtgccgcgtg aagctgcgcg
     1981 atcagcaacg cctggaccgg cttggttacc tcgaggaata tccgcaatac ccgcacggcg
     2041 aattcagcga tgtcgttccg cgcggcggca atgctggcgg cggcggtcag ccgggctggg
     2101 tgctgaaatg caagggctgg gaaactgatc cgaactcgta catctacttc acgatccagg
     2161 gtcacgcgtg ggcgccgatt tgccgcgcga tcggcaaacc cgagtggatc gaagacgcgc
     2221 actacaacac ggcgtccgcg cgtcagccgc atatcttcga catcttcaag acgatcgaag
     2281 agtggctcgc cgataaaacc aagttcgaag cggtggacat cctgcgcaag ttcgatattc
     2341 cgtgcgcgcc ggtgttgacg atgaaagagc tggccaatga tccgtcgttg cgcgaaagcg
     2401 gcacgattgc cgaagtccag cacaaggaac gtggctcgta tcttacggtg ggcagcccga
     2461 taaagttctc ggacatgaag ccggagatca cgggatcgcc gttgctgggc gagca
//
LOCUS       DATGBK010000239         2011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_142066, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000239 DATGBK010000000
VERSION     DATGBK010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142066"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1353
                     /locus_tag="VKJ77_03510"
     CDS             <1..1353
                     /locus_tag="VKJ77_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44372.1"
                     /translation="RMPFSSFHRRLLLMGGLGYTFDAMDAAVLAFLLPVLRTQWSLSS
                     VQTGVLGSGTFIGYFLGAMLAGILGDLIGRRRVMMYALVIYCIASLASATAHDWPFFL
                     ATRIVAGLGTGAESAIVAPFLSEFVARRYRGAFTGSLAGFFSFGFVAAALLGYLVIPL
                     APNAWRVVMVITALPIVMLLWWRRALPESPRWLVARGRHAEAEVIVARAEAELIAAGV
                     KLEPLPATDAAAEAEVPVAVERASVLANVKALWSRKLARITTMTWLMWLSITFSYYAF
                     FTWIPSLLVQNGMTITRSFSYSLVIYIAQMPGYFSGAWLNEKIGRQATIASYMVLGGV
                     SALGLALTRSDAGIMISGVLLSFFMNGTYAGVYAYTPEVFPTDVRATGTGLASSIGRL
                     GAIAAPILVGYVYPRLGFPGVFGATTFVLLIGAAAVVLMGVPTRGRSLEDIAAQQLRS
                     "
     gene            complement(1379..>2011)
                     /locus_tag="VKJ77_03515"
     CDS             complement(1379..>2011)
                     /locus_tag="VKJ77_03515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reductase"
                     /protein_id="HMC44373.1"
                     /translation="SIASSPRAHPDEIHLTVSAVRYNNGRRQRKGVSSTFLADRAGDA
                     SVPVFVQKSAHFRLPHSGDAPMIMVGPGTGVAPFRGFLHERLARGDTGRNWLFFGEQH
                     AATDYYYGDELDEMRRKGLLNRLDLAFSRDQAEKIYVQDRMREHGGELWSWLEAGAHF
                     YVCGDAGRMARDVDAALKSVVARHAGMSDDKAQEYVSGMVRDKRYVRDVY"
BASE COUNT          322 a          632 c          639 g          418 t
ORIGIN      
        1 cgcatgccgt tttcatcctt tcatcgacgg ctactgctga tgggcggtct cggctacacc
       61 ttcgacgcca tggacgccgc cgtgctcgcg ttcctgctgc cagtgctgcg cacgcagtgg
      121 tcgctgagca gcgtgcagac gggcgtgctc ggcagcggca cgttcatcgg ctattttctc
      181 ggggcgatgc tcgcaggcat tctcggcgat ctgatcggcc ggcggcgcgt gatgatgtac
      241 gcgctggtga tctactgcat cgcatcgctg gccagcgcaa ctgcgcacga ctggccgttc
      301 tttctcgcga cacgcattgt cgccggactt ggcacgggcg ccgaaagcgc gatcgttgca
      361 ccgttcttgt cggagttcgt ggcgcgccgg tatcgcggtg cgttcacagg cagtctcgcc
      421 ggcttcttct cgttcggctt cgtggcggct gcgctgctgg gttatctcgt gatcccgctt
      481 gccccgaacg cgtggcgcgt ggtgatggtg atcacggccc tgccgatcgt gatgttgctc
      541 tggtggcggc gcgcgttgcc cgaatcaccg cgctggctgg tcgcgcgcgg gcggcacgcc
      601 gaagccgagg tcatcgtcgc gcgggcggaa gccgaattga ttgcagcggg cgtgaaactc
      661 gaacccctgc cggctaccga tgcggccgcc gaagcggagg ttcctgtcgc ggtggaacgt
      721 gcttcggtgc tcgcgaacgt gaaggcgctc tggtcacgca agctcgcgcg catcaccacc
      781 atgacgtggc tcatgtggct ttcgatcacc ttcagctatt acgcattctt cacgtggatt
      841 ccaagcctgc tcgtgcagaa cggaatgacg atcacgcgca gcttttcgta ctcgctcgtg
      901 atttatatcg cgcagatgcc cggttatttc tcaggcgctt ggctgaacga gaagatcggc
      961 cggcaggcga ccattgcgtc gtatatggtg ctggggggcg tctcggcctt gggccttgcg
     1021 ctcacgcgca gcgacgctgg catcatgata tccggcgtac tgctgtcgtt cttcatgaat
     1081 ggcacgtatg cgggtgtcta cgcctacacg cccgaggttt ttccaaccga tgtccgcgca
     1141 accggcacgg gtctggcctc atcaatcggt cggctgggcg cgatcgccgc ccctatcctg
     1201 gtcgggtacg tctacccgcg gctgggcttt ccaggcgtgt ttggcgcaac cacgttcgtg
     1261 ctgctgatcg gtgcggcggc agtggtgctg atgggcgtgc ccacgcgtgg acggtcgctt
     1321 gaagacatcg cggcacagca gttgcgcagt tagcgagatc accggactcg cgcgggactc
     1381 aatacacgtc ccgcacataa cgcttgtccc tgaccatgcc actgacgtat tcctgagcct
     1441 tgtcgtcgct catgccggca tgccgagcga cgacagactt gagcgctgcg tcaacgtcgc
     1501 gggccatgcg acccgcgtcg ccgcaaacgt agaaatgcgc acccgcctcg agccacgacc
     1561 acagttcccc gccgtgctca cgcatgcgat cctgcacata gattttttca gcctggtccc
     1621 gcgagaaggc gagatcgaga cggttcagca gacccttgcg acgcatctca tcgagttcat
     1681 cgccgtagta atagtccgta gcggcatgct gctcgccaaa gaacaaccag ttgcggccgg
     1741 tgtcgccgcg cgcgaggcgt tcatgcagga agcctctgaa cggggccacg ccggtgccgg
     1801 ggccaaccat gatcataggt gcatcgccgc tatgcggaag acggaaatgc gccgatttct
     1861 ggacgaatac cggcacgctg gcgtcgcctg cacgatcggc cagaaaagtc gaggacacgc
     1921 ccttgcgctg acgccggccg ttgttatacc ggactgccga tacggtcaga tgtatctcgt
     1981 cagggtgcgc cctgggactc gatgcaatcg a
//
LOCUS       DATGBK010000240         3574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_326803, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000240 DATGBK010000000
VERSION     DATGBK010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3574
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326803"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..284)
                     /locus_tag="VKJ77_03520"
     CDS             complement(<1..284)
                     /locus_tag="VKJ77_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44374.1"
                     /translation="MRTKKTQAQSSEPRLKPSLEEALAKASPRIAPRPVTLASVLIHG
                     GVVLLWLVLFARAFFLHGVVAWSTGIAYVVYDTLLLMFVAAKSWTLVRPP"
     gene            complement(311..913)
                     /locus_tag="VKJ77_03525"
     CDS             complement(311..913)
                     /locus_tag="VKJ77_03525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HMC44375.1"
                     /translation="MSTQAANVVSEPPQTEMPLRYTRTAMALHWLIALLIICNVVLGL
                     TAESFPDSWVRRIVDTHKSIGITVLGLVLLRILWRVSHRPPPLPKAFPKWEHMAAHIA
                     HFLLYLLMIGLPLSGWLHDSAWKDAATHPMHLFGVIPWPRVGLVMHLDPALKESLHDR
                     FGALHTWLGYALYALLAMHVGGALKHQWIDKKSVISRMVP"
     gene            complement(1086..2048)
                     /locus_tag="VKJ77_03530"
     CDS             complement(1086..2048)
                     /locus_tag="VKJ77_03530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44376.1"
                     /translation="MELRHLRYFLTVAEERQFTRAAARLHIQQPPLSQQIQELERELG
                     FALFTRLPRGVELTSAGAAFEVDARAVLDALDQGVVNARRVANGQLGSVRIALTSSAA
                     FHPLATAAIRRFRATHPDIAIDLNEINAADIIERMMNGRVDAGILRKPIEMPAELRFD
                     LLHEERMVLVLPVGHKLLPAKGVRPGKQPRVPLKALAGESFIFVRRPGAPGMYADFIR
                     ACEAAGFKPEVVSEVPRMLSAINLVAAGGGITLVPASMQRYQQETVVYCAVAGDEAFS
                     APLHLVTRRDAANPAALRFAQAVLAFVSPGASSAEPAEPFQSIT"
     gene            2167..3519
                     /locus_tag="VKJ77_03535"
     CDS             2167..3519
                     /locus_tag="VKJ77_03535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012338465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44377.1"
                     /translation="METTFPPNGAEHPPASLASLSKSQIRRAVLASVIGNGLEWFDFL
                     IYGYFAKIIAHVFFPVGNAALSTALTLGTFAIGFIVRPLGGIVIGAYADRVGRRKTLS
                     MLILMMAASTLLMGLTPGYSTIGIAAPLLVLLARVMQGLSVGGEFATAAAMLTEYAPR
                     GKKMYFGSFQMTSQAVALVLSSAFGYFLTSNLDRASLESWGWRVPFLVGALVGPVGFY
                     IRHKVAESPEFVELRERLGHAPRQTIRGFFRQRGDASLCAMGVIIIGTATNYLWHTFM
                     PLYVERQLHLPLKNALFGTAVSGLVSIVGYPLAGKLADRIGAYRLFFPVTIVWVVIAY
                     PLFAWVLASPTPGRVFAAQMVATVVLSLMSGPHPGMLTQLFPTATRSTGVALSYNIAV
                     TLFGGLAPLTVSTLITVTGSNIVPAYYLIFAGFVSLALVGLTRSGQRLRRDPEALPLD
                     "
BASE COUNT          651 a         1129 c         1088 g          706 t
ORIGIN      
        1 ttgggcggcc tgacaagcgt ccacgatttc gccgcgacga acatcagcag cagggtgtca
       61 tagaccacgt aggcaatgcc cgtcgaccat gccaccacgc cgtgcaggaa aaacgcgcgg
      121 gcgaatagca cgagccacag caggaccacg ccgccgtgga tcagcacgct cgcgagcgtc
      181 accgggcgcg gcgcaatgcg cggcgaagcc ttcgcgagcg cctcttccag cgagggtttt
      241 aaacgcggtt ccgacgattg ggcttgggtc ttttttgttc gcatgggaac ggcgtgcagt
      301 ttcacatcca ttacggcacc atccgcgaga tcaccgactt cttgtcgatc cactgatgct
      361 tgagcgcgcc gcccacgtgc atcgccaaaa gtgcgtacag cgcgtaaccc agccacgtat
      421 gcaacgcgcc gaaacgatcg tgcaacgatt ccttcagcgc cggatcgagg tgcattacga
      481 gccccacgcg cggccacgga atcacgccga acagatgcat cggatgcgtc gcggcgtctt
      541 tccacgccga gtcgtgcagc cagccggata acggcaaacc gatcatcagc agatacagca
      601 agaagtgcgc gatgtgagcg gccatgtgtt cccacttcgg aaacgccttc ggtaatggcg
      661 gcggccgatg cgaaacgcgc cacaagatac gcagcagcac cagcccgaga acggtgatgc
      721 cgatggactt atgggtatcg acgatccgcc gcacccatga atcggggaac gattccgccg
      781 tcagtcccag cacgacgttg cagataatca acaacgcgat gagccagtgc agggccatcg
      841 cggtgcgcgt gtagcgcagc ggcatctcgg tctggggcgg ttctgacacc acgttggcag
      901 cttgcgtgga cattgaaact ccgtgcgaaa aatgaggatc ggctggatag ttctgcgacc
      961 tgtcgcgccg gattggttta ttcaagcgcg aatgtttgca gacgacacga tccaaacgcg
     1021 ccgtggcacc ggtttattcc atcgattctg cgggaaaacg ctaacttacg tttgtagagg
     1081 aattgtcagg tgatggattg aaagggttcg gcgggttcgg cgctgctcgc tcccggcgac
     1141 acaaacgcca gcaccgcttg agcgaatcgc aacgcagccg gattcgcggc gtcgcggcgc
     1201 gtgacaaggt ggagcggcgc ggagaacgct tcgtcgccgg ctacagcgca atacaccacg
     1261 gtttcctgct ggtatcgctg catggatgcc ggcacgagcg tgatgccgcc gcccgccgcc
     1321 accaggttga tggcgctcag catgcgcggc acttcgctca ccacctccgg cttgaatccc
     1381 gccgcctcgc acgcgcggat gaagtcagcg tacatgcccg gcgcgcccgg ccgccgcacg
     1441 aagataaacg actcgccggc gagcgccttc agcggcacac gcggctgttt gcccgggcgc
     1501 acgccttttg ccggcagcag cttgtggccg accggcagca cgagcaccat gcgctcctcg
     1561 tgcagcaggt cgaagcgcaa ctccgcgggc atttcgatcg gcttgcgcaa gatgcctgca
     1621 tcgacgcgtc cattcatcat ccgttcgatg atgtcagcag cattgatctc gttcaggtcg
     1681 atggcaatat ccggatgcgt cgcgcgaaaa cggcggatcg cggcggtggc aagcgggtgg
     1741 aatgccgccg aactcgtcag cgcgatccgc acggagccaa gttgaccgtt cgccacccgc
     1801 cgcgcattga ccacaccttg atcgagcgcg tcgagcacgg cgcgggcatc gacctcaaaa
     1861 gccgcgcccg ccgatgtcag ttccactccg cgcggcaagc gcgtaaacag cgcaaaaccc
     1921 agttcgcgct cgagctcctg aatctgctgc gacaacggcg gctgctgaat atgcagccgc
     1981 gccgccgccc gcgtgaactg gcgctcttcg gcgacggtaa ggaagtaccg caggtgacgc
     2041 agttccatcg agaagcctcg catatgtgac agatatggca atgccattcg atatgtattt
     2101 tacatttgcc actgcgtttc gtactcttcg attcaaatac gcataaatgc acggatctgg
     2161 agacatatgg aaaccacttt cccacccaac ggggcggagc atccgcccgc ttcactggcg
     2221 tcgctcagca agtcgcagat tcgccgcgcc gtgctggctt cggtgatcgg caatgggctg
     2281 gaatggttcg atttcctgat ctacggttac ttcgcgaaga tcatcgcgca cgtgtttttc
     2341 ccggtcggca acgcagcgct ttccacagcg ctgacgcttg gcacgtttgc gattgggttt
     2401 atcgtgcggc cgctcggcgg gatcgtgatc ggcgcgtatg cggaccgcgt cgggcgccgc
     2461 aagacgctct ccatgctcat tttgatgatg gccgccagca ccttgctgat gggcctgacg
     2521 cccggctatt cgaccatcgg aatcgccgcg ccgttgcttg tactgcttgc acgcgtcatg
     2581 cagggtttat ccgtcggtgg cgagttcgcc acggccgccg cgatgctcac ggaatacgcg
     2641 ccgcgcggca agaaaatgta cttcggcagc ttccagatga catcgcaggc ggtggcgctg
     2701 gtgctttcgt ctgcgtttgg ttatttcctg acatcgaatc tggaccgggc atcgctcgaa
     2761 tcctggggct ggcgcgtgcc cttcctggtc ggcgcgctgg tcgggccggt cgggttctac
     2821 atccgccaca aagtcgcgga atcacccgag ttcgtggagt tgcgcgaacg gctcggccac
     2881 gcgccgcggc agaccatccg cggctttttc cggcaacgcg gcgacgcgtc gttgtgcgcg
     2941 atgggcgtga tcatcattgg cactgcaacg aattatctgt ggcacacgtt catgccgctg
     3001 tatgtcgagc gccagttgca tttgccgctc aagaacgcgt tgttcggcac ggcggtgtcg
     3061 gggctggtct ccatagtggg ttatccgctc gcggggaaac tcgcggaccg gatcggcgcg
     3121 taccggctgt tctttccggt gactatcgta tgggtcgtga tcgcgtatcc gctgtttgcg
     3181 tgggtactcg cgtcccccac gccgggccgt gttttcgccg cgcagatggt cgcgaccgtg
     3241 gtactgagcc tgatgtctgg gccgcatccc ggcatgctca cgcagttgtt tcccactgcc
     3301 acgcgctcta ccggcgtcgc gctttcgtac aacatcgcgg tgacgctgtt cggtggcctc
     3361 gcgcctctga ccgtctccac gctgatcact gtgaccggat cgaatatcgt gccggcgtat
     3421 tacctgatct tcgcgggctt cgtatcgctc gcgctggtcg gactcacacg ctccgggcaa
     3481 cgtctgcgcc gcgatcccga agccctcccg ctggattgaa atgacttctg tgcatccctc
     3541 cccctcttcg cttaaagctc gcaacgagcg tccg
//
LOCUS       DATGBK010000241         2501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_280585, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000241 DATGBK010000000
VERSION     DATGBK010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280585"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..839)
                     /locus_tag="VKJ77_03540"
     CDS             complement(<1..839)
                     /locus_tag="VKJ77_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HMC44378.1"
                     /translation="MNPVPSSVSVDPHNDVLSTEHSGSHSGTHAHDHDTAHDPDSPSA
                     ARKYIDAVLEQSFRHLFGPTATPEKPRRHDVVSIAKLTTELAAYLSPEEIKQVKLAFH
                     FSDEAHLGQYRQSGEPYITHPVAVAEICASWKLDDQSIMAALLHDVIEDQGVTKTEIA
                     ERFGPKVAELVDGLSKLDKMEFRNREEAQAENFRKMLLAMARDVRVILVKLADRLHNM
                     RTLGAVPPEKRRRVARETIDIYAPIAHRLGLNNTYRELQDLSFANFNPHRYATLERAV
                     KAAR"
     gene            complement(902..1105)
                     /gene="rpoZ"
                     /locus_tag="VKJ77_03545"
     CDS             complement(902..1105)
                     /gene="rpoZ"
                     /locus_tag="VKJ77_03545"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HMC44379.1"
                     /translation="MARITVEDCLKMIPNRFELALAATYRARQLAQGHTPKIESRDKP
                     TVVALREIAAGQVGVEMLKKVPV"
     gene            complement(1163..1828)
                     /gene="gmk"
                     /locus_tag="VKJ77_03550"
     CDS             complement(1163..1828)
                     /gene="gmk"
                     /locus_tag="VKJ77_03550"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HMC44380.1"
                     /translation="MNDAQRNTYAGVYPGNLFMVVAPSGAGKSTLVNALLAQDEAIRL
                     SVSYTTREPRPGEQNGVQYHFASVDDFMARHAAGEFLESAEVHGNYYATSRVWIEAQM
                     KSGHDVLLEIDWQGAQQVKKRFRNAVEIFILPPSLDALEERLKKRGQDSPNVIVRRLL
                     AAGSEMAHAPEAEYVLINENFERALAELQCLVAATRLRFGSQYARHTQLFVELGIHSP
                     HAE"
     gene            complement(1836..>2501)
                     /locus_tag="VKJ77_03555"
     CDS             complement(1836..>2501)
                     /locus_tag="VKJ77_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1732 domain-containing protein"
                     /protein_id="HMC44381.1"
                     /translation="NRDALSQLAALERSVLDIFPDAERMRTGEILRWPGILSESGVSA
                     ETLRDAVLACGKQAITELIDVRAREGAALAAVLIANVTEMEAIVAKVTPLVPELITKH
                     QQKIVERLQDALGIASPEGTQTSIPREEIAERIRQEVTMYGIRIDITEELQRLSAHLT
                     ETRHVLQKGGKVGKRLDFMMQELNREANTLGSKAAAKELADSSMTLKLLIEQMREQVQ
                     NLE"
BASE COUNT          448 a          760 c          740 g          553 t
ORIGIN      
        1 cgagcggcct tcacggcgcg ttcgagcgtg gcgtacctat ggggattgaa gttcgcgaag
       61 ctcaggtcct gcagctcgcg atacgtgttg ttcaacccga gccgatgcgc gataggcgcg
      121 tagatgtcga tggtttcgcg cgccacacga cgccgctttt ccggcggcac tgcaccgagc
      181 gtgcgcatat tgtgcagccg gtcggccagc ttgacgagaa tcacacgcac gtcgcgcgcc
      241 atggcgagca gcatcttgcg gaagttttcc gcctgcgctt cctcccgatt gcggaactcc
      301 atcttgtcca gcttcgacaa gccgtcgaca agttctgcaa ccttcggccc gaaacgttcc
      361 gcgatttcgg tcttcgtcac gccctgatct tcgatcacgt catgcagcaa cgccgccatg
      421 atcgactgat cgtcgagttt ccagctggcg cagatttccg cgaccgccac cggatgcgtg
      481 atgtatggct cgccactctg acgatactgc ccgagatggg cttcatcgct gaaatggaaa
      541 gccagcttga cctgcttgat ttcttccggc gaaaggtacg cggccagctc ggtggtcagt
      601 ttcgcaatgg aaactacgtc gtggcggcgc ggcttttccg gtgtggcagt cggcccgaac
      661 agatggcgaa acgattgttc gaggactgcg tcgatgtact tgcgtgccgc cgagggcgag
      721 tcggggtcat gagcggtgtc atgatcgtgc gcgtgagttc cagaatgaga cccagaatgc
      781 tctgtactga ggacgtcgtt atgcgggtcc acagagacgg acgatggaac aggattcatg
      841 gtcgcctccg tggttggctg acgcggttag tgacaatgcg cgcagacgtc cgggccgcaa
      901 atcagaccgg caccttcttc aacatctcga cgccgacctg gccggccgcg atttcgcgca
      961 gcgcaacaac agtcggtttg tcgcggcttt cgatcttcgg cgtatggcct tgagcgagct
     1021 ggcgcgcgcg atacgttgct gcgagcgcga gctcgaagcg attggggatc attttcagac
     1081 agtcttcgac ggtgatgcgg gccatggttg attccttctc gatatgttct tcattctacc
     1141 ttatgtgacc ggaaagcccc gttcactcgg cgtgcggcga gtgtatgcct aactcgacaa
     1201 acaactgcgt atgacgggcg tactgtgaac cgaaacgtag ccgtgtggca gcaacgagac
     1261 actgcaattc ggccagcgcg cgttcgaagt tctcgttgat cagcacatat tccgcttccg
     1321 gcgcatgcgc catctcgctg cctgcggcca gcaaacggcg cacgatgacg ttcggcgagt
     1381 cctggccacg cttcttcaga cgctcttcca gcgcatccag cgacggcggc aggatgaaga
     1441 tttccaccgc attgcgaaag cgtttcttga cctgttgcgc gccttgccaa tcgatttcaa
     1501 gcagcacgtc gtggccgctt ttcatctgcg cttcaatcca cacgcgcgac gttgcgtagt
     1561 agttcccgtg cacttccgca ctttcgagga actcgccggc ggcgtggcgc gccatgaagt
     1621 catcgactga agcgaaatgg tattgaacgc cgttttgctc gcccggacgc ggttcgcgcg
     1681 tggtgtacga cacggacagg cggattgctt cgtcctgcgc gagcagcgcg ttgaccagcg
     1741 tcgacttgcc cgcgcccgac ggcgccacga ccatgaacag gttgcccgga taaacaccgg
     1801 cgtaggtgtt gcgttgtgcg tcgttcatag aagcgttact ccaggttttg cacttgctcg
     1861 cgcatctgtt cgatgagcaa tttgagcgtc atcgacgaat ccgcgagttc tttcgccgcc
     1921 gccttcgacc cgagcgtgtt cgcttcgcga ttcagttcct gcatcatgaa gtcgagccgc
     1981 ttgcccactt tgccgccctt ttgcagcacg tggcgcgttt ccgtcagatg cgcggagaga
     2041 cgctgcaatt cctcggtgat gtcgatacgg atgccataca tggtcacttc ctggcgaatc
     2101 cgttccgcga tttcctcgcg cggaatactg gtttgcgtgc cttccggcga cgcaatgccc
     2161 agcgcatcct gcaaacgctc gacaattttc tgctgatgct tcgtgatcag ttccggcacg
     2221 agcggcgtga cctttgccac gatagcttcc atttccgtca cgttcgcgat cagcacggcg
     2281 gcaagcgcgg cgccttcacg ggcgcggaca tcgataagtt cggtgatcgc ctgcttgccg
     2341 catgccagga ccgcgtcgcg cagcgtttcc gccgataccc cgctctccga caaaatgcca
     2401 ggccagcgca ggatttcacc cgtgcgcatg cgttcggcat cggggaaaat atccagcacc
     2461 gagcgctcga gcgcggcgag ttgcgacagc gcatcgcgat t
//
LOCUS       DATGBK010000242         1808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_118805, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000242 DATGBK010000000
VERSION     DATGBK010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118805"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..450
                     /locus_tag="VKJ77_03560"
     CDS             <1..450
                     /locus_tag="VKJ77_03560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HMC44382.1"
                     /translation="LQSNKTKVVAENFDWVHSVDRLKIAERLSDQRPDGMPRLNVCLQ
                     INVSGEDSKSGVAPDDALALAHQIAALPRLRLRGLMAIPEPAGTLDEQRVPHRRLREI
                     MDTLRADGLELDTLSMGMSADIEAAILEGATMVRIGTAIFGARDYSH"
     gene            477..1289
                     /gene="proC"
                     /locus_tag="VKJ77_03565"
     CDS             477..1289
                     /gene="proC"
                     /locus_tag="VKJ77_03565"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006492995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HMC44383.1"
                     /translation="MKIAFIGGGNMASALIGGLIKRGVAPADLYVVDPGEEARARVEK
                     EFGAATGTSIDSKLSGYDAILLAVKPQVLKDVATALQPVLSKQLVISIAAGIRAADLS
                     RWLGGYTQIVRTMPNTPALIGMGVTGLAALPGVDNAAKALASKVLEAVGETVWFDDEA
                     KIDAVTAISGSGPAYVFYFIEAMQEAARQLGMDEQQGRALAVATFTGAAQLAAQSGEP
                     ASVLRERVTSKGGTTAAALASFDAQGVKDAIVRGALAADARAKEMGEELGKA"
     gene            complement(1421..>1808)
                     /locus_tag="VKJ77_03570"
     CDS             complement(1421..>1808)
                     /locus_tag="VKJ77_03570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44384.1"
                     /translation="VDTLQIGGDHNVLDLTSVSGMTSASKLSNVEVIDLHNAQNTLKL
                     SLVDVLNLGEADLFVKDGAQQLMVKGSVSDSVDLSNSHVGNQAYGEWHRAADVHVGVE
                     TYAVYEHSASHVELLVQQGIQVALHA"
BASE COUNT          369 a          531 c          548 g          360 t
ORIGIN      
        1 ttgcagtcga acaagacgaa ggtggttgcc gagaattttg attgggtaca ttcggtggat
       61 cgactcaaga tcgccgagcg tttgtccgat cagcgcccgg acggcatgcc ccggctcaac
      121 gtgtgcttgc agatcaacgt gagcggcgaa gactcgaaaa gcggcgtcgc gccggacgac
      181 gccctggcgc tcgcgcatca gattgcggcg cttcctcgtt tgcgcctgcg cggcttgatg
      241 gccatccccg aaccggccgg cacgctcgat gaacaacgcg tgccgcatcg gcgtctgcgc
      301 gaaatcatgg acacgttgcg cgcggacggc cttgaactcg acacgctttc catggggatg
      361 tcagcggata tcgaagcggc tattctcgaa ggcgcaacca tggttcgtat cggcacggcg
      421 attttcggcg cacgcgatta ctctcattaa ttcttctcga ccacttcaac ttcatcatga
      481 aaattgcatt tatcggtggc ggcaacatgg cgtcggcact catcggcggg ctgatcaagc
      541 gcggcgtcgc gccggcggat ctatacgttg tcgatcccgg cgaagaggct cgtgctcgcg
      601 tcgagaaaga gtttggggca gcgaccggta cctcgatcga ttcgaaactg agcggctatg
      661 acgccatcct gctcgccgtc aaaccgcaag tgctgaagga cgtggccacg gcgctgcagc
      721 cggtgttgtc gaagcaattg gtgatcagta ttgctgccgg cattcgcgcc gccgatttgt
      781 cgcgctggct cggcggctac acgcagatcg tgcgcacgat gccaaacacg ccggcgttga
      841 tcggcatggg cgtaacgggc ctggccgcac tgccgggcgt agacaatgca gcgaaggcgc
      901 tggcgtcgaa agtattggaa gcggttggcg agaccgtctg gttcgacgat gaagcgaaga
      961 tcgatgcagt caccgccatt tcgggcagcg gtccggcata cgtgttttat ttcatcgaag
     1021 caatgcagga agccgcgcgc caactcggca tggacgagca acaagggcgt gcgctggccg
     1081 tggctacatt caccggcgcg gctcaactgg cggcgcaatc gggtgaaccg gctagtgtgc
     1141 tgcgcgaacg cgtgacatcg aagggtggca cgacagcagc ggctttagct tccttcgatg
     1201 cccaaggcgt gaaggatgcg atcgtccgcg gcgcgctggc cgccgatgca cgagcgaagg
     1261 agatgggcga agagctgggc aaagcctgac gtccacgcgc cctcggcgct tggacactgc
     1321 aaagcattgc gctgaaccat gaaaaatgcc ccgttgcgga agattccaca acggggcgtt
     1381 ttgccttcta cctctctaca tctttgctac ttcttcaaac ttaagcgtgc aatgcaacct
     1441 ggatgccttg ctgaaccagc agttcaacgt gcgacgccga gtgttcgtac acagcgtacg
     1501 tttcgacacc aacgtgcaca tcagctgcac gatgccattc gccgtaggcc tgattgccaa
     1561 cgtgcgagtt cgacagatca actgaatccg acaccgaacc cttcaccatc agttgttgcg
     1621 cgccgtcctt gacgaacaga tctgcttcgc cgaggttcag cacgtcaacg agcgacagct
     1681 tcagcgtgtt ttgcgcgttg tgcaggtcaa tcacttcaac gttcgacagc ttggacgcag
     1741 acgtcatgcc cgacaccgaa gtcagatcca gcacgttgtg gtcgccgccg atctgcaacg
     1801 tatccacg
//
LOCUS       DATGBK010000243         4215 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_165045, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000243 DATGBK010000000
VERSION     DATGBK010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4215
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165045"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..736
                     /locus_tag="VKJ77_03575"
     CDS             <1..736
                     /locus_tag="VKJ77_03575"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HMC44385.1"
                     /translation="GGIHALARFVGEHAPEYVDWWAQIHLIPVKRTSRPEISYLSKQE
                     MDALLAATDVNTSQGQREHALLLFMFNSGARASEAAQLKIGDVDWHTRSVSIVGKGNR
                     HRRCPLWKSTLDALCLQTEGRAATAPVFLNRFHQTMTRSGIHALVKRCAIRAAASAPS
                     LAGKNVHPHVIRHTTASLLLQAGVDINTIRGWLGHVSLETTNIYAEINLETKARALAA
                     CEVDSGAGEQKQWRDQPDLIAFLRAL"
     gene            complement(621..1505)
                     /gene="istA"
                     /locus_tag="VKJ77_03580"
     CDS             complement(621..1505)
                     /gene="istA"
                     /locus_tag="VKJ77_03580"
                     /inference="COORDINATES: protein motif:HMM:NF033546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HMC44386.1"
                     /translation="MLDYEAYCKIRDCHDRQHLTITQTARALGLHPQTVTKWLKAGQY
                     RPRQSPPRASRLDPFKAQVVRWLDAHPYSAQQIFQRLREVGFEGGYTIVRDYVHKVRP
                     PQRQAFLKLAFAPGECAQIDWGEYGSIGVGSTRRRLSFFVMVLCYSRLMYVEFTVSQT
                     MEHFLACHEHAFAAIHGCPRKVMVDNLKSAVLQRLAGEAPVFNPRYLDAARHWGFDIV
                     ACNVGKGNEYGVVKNMCCSITNWAKAASLRKANSTYYSAKERAGRRSGRAGRATAFVL
                     PHRCLLRMPPAPAPLFPD"
     gene            complement(1498..1896)
                     /locus_tag="VKJ77_03585"
     CDS             complement(1498..1896)
                     /locus_tag="VKJ77_03585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44387.1"
                     /translation="MPIKRVICPERMRQIPAHFSWVDHRLVRERYIERCDACAAALYL
                     FLVTVADAQGLSYYADTSLVHRLSMAPARLEMARNDLIRIGLIAWQRPLYQVLALDAP
                     PPESAASLRGYPDVATQLERLHAALGKRHA"
     gene            complement(1868..2182)
                     /locus_tag="VKJ77_03590"
     CDS             complement(1868..2182)
                     /locus_tag="VKJ77_03590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44388.1"
                     /translation="MRVQRWRGEHPGYWRHPGSPAAGALQDDCRTQAIEIKEESAFLV
                     GEALQEALSAQPAVLIGLIAHLTDSALQEDIARSTRRLLQLGKDILNGGREHADQASH
                     LP"
     gene            2690..2944
                     /locus_tag="VKJ77_03595"
     CDS             2690..2944
                     /locus_tag="VKJ77_03595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44389.1"
                     /translation="MMDERWKNPEARYPHKGVLRFDRRRPDGEILHPYAGRKDGDEWI
                     MELYLPFLQTYAGMPEREFIALPTATAADVRARADRQSTA"
     gene            3085..3327
                     /locus_tag="VKJ77_03600"
     CDS             3085..3327
                     /locus_tag="VKJ77_03600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44390.1"
                     /translation="MQRALETACHDFTSELDKLRADGKLEQERLKAAETRALSEIGRE
                     RQVAGRLQKELDTANRKTEQGNVRHRRRAETAGSSR"
     gene            3281..3565
                     /locus_tag="VKJ77_03605"
     CDS             3281..3565
                     /locus_tag="VKJ77_03605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44391.1"
                     /translation="MSGIDDVQKLQAQVGNLHQQVGVLEGKLDALRTENARYADEGLQ
                     ARDQRDQRALSLTDAAAKQKVLTAKRTAKSTGAPRKSSGPVGKSPRTRKA"
     gene            3767..>4215
                     /locus_tag="VKJ77_03610"
     CDS             3767..>4215
                     /locus_tag="VKJ77_03610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012638429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 N-terminal domain-containing protein"
                     /protein_id="HMC44392.1"
                     /translation="MTDIVLSSADYKGIHGDIVAILESSRRAAARSVNALMTATYWEV
                     GRRVVEFEQGGENRAAYGQALLVRLSGDLTKRFGRGFGVDNLELMRLFYQTYPPAAIS
                     ESLIRKSADTSAPPNSELLIRKFDLERLATVFPLSWTHYVHLMRRTRS"
BASE COUNT          906 a         1276 c         1270 g          763 t
ORIGIN      
        1 cggcggcatt catgcgctgg cccgcttcgt cggcgaacat gcaccggaat acgtcgactg
       61 gtgggcgcag attcatctga tccccgtcaa gagaaccagt cggccggaga tcagctatct
      121 tagcaagcag gaaatggacg ccctgcttgc tgccaccgac gtcaatacgt cgcaagggca
      181 acgcgaacat gcgttactgc tgttcatgtt taactccgga gcgcgtgcaa gcgaagctgc
      241 gcagctcaag attggcgacg ttgactggca cacgcgctcg gtcagcatcg tcggcaaggg
      301 gaacagacat cggcgctgcc cgctctggaa atcgacgctc gatgcgttgt gcttacagac
      361 cgaaggaagg gccgcaactg cgccggtgtt cctcaaccga ttccaccaga cgatgacgcg
      421 atccggcatt catgcactgg tcaagcgctg tgctatccgt gccgccgcca gcgcgccgtc
      481 acttgccggc aagaatgtgc acccacatgt gattcgacat acgaccgcct cgctactact
      541 tcaggccggt gtcgacatca atacgatacg cggctggctc gggcacgttt cgttggagac
      601 gaccaacatc tatgccgaga tcaatctgga aacaaaggcg cgggcgctgg cggcatgcga
      661 agtagacagc ggtgcgggag aacaaaagca gtggcgcgac cagcccgacc tgatcgcctt
      721 cctgcgcgct ctttagccga ataatatgtg ctgttcgctt tccgcaaaga cgctgccttg
      781 gcccagtttg ttatcgagca gcacatattt tttaccacgc catactcgtt gcctttgccg
      841 acgttgcagg caacgatgtc gaaaccccag tggcgcgccg cgtcgaggta gcgcggattg
      901 aacactggcg cctcgcccgc caggcgttgc aacacggcgg acttcagatt gtccaccatc
      961 accttcctcg ggcaaccatg gatggccgcg aacgcatgct catggcacgc aaggaagtgc
     1021 tccatcgtct gcgacacggt gaattccaca tacatcaggc ggctgtagca caacaccatg
     1081 acgaagaacg acagtcgccg ccgagtcgag ccgacgccaa tcgagccgta ttcgccccag
     1141 tcgatttgcg cgcactcgcc gggggcgaag gcaagcttga ggaacgcctg gcgctgcggc
     1201 ggacgaacct tgtgcacata gtcgcgcacg atcgtgtagc cgccctcaaa gccaacttcg
     1261 cgcaagcgct ggaagatctg ctgcgcgctg tacggatgcg cgtcaagcca gcgcaccacc
     1321 tgcgccttga acggatcaag tcggctcgcg cgtgggggcg attggcgggg ccggtactga
     1381 ccggctttga gccatttcgt cacggtttgc ggatgcagcc cgagcgcgcg cgccgtttgc
     1441 gtaatcgtca ggtgctgccg atcatggcaa tcgcggatct tgcagtacgc ctcatagtca
     1501 agcatggcgc ttgcccaacg ccgcgtgcag ccgctcaagc tgcgtggcca catccgggta
     1561 gccacgcagg gacgctgccg actcaggagg cggcgcatcc agcgccagca cctgatacag
     1621 cggcctttgc caggcgatca aaccaatacg gatcagatcg ttgcgggcca tctccagacg
     1681 cgccggcgcc atcgacaggc gatgcaccag cgacgtgtcc gcgtaatagc tcaggccctg
     1741 ggcatcggcg acagtgacca gaaacaggta cagcgcggcg gcacacgcgt cacagcgctc
     1801 gatataccgc tcgcgcacca gccggtgatc gacccagctg aagtgcgccg gaatctgccg
     1861 catccgctca gggcagatga ctcgcttgat cggcatgctc gcgccccccg ttcaagatgt
     1921 cctttcccag ttgtagcagt cgccgggtgc tgcgcgcgat gtcctcttgt aacgcactgt
     1981 cggttaaatg ggcgatcagc ccaatcagca cggccggttg cgccgataag gcctcttgta
     2041 acgcctcgcc cactaagaat gcagattcct cttttatttc aatggcttgc gtgcggcagt
     2101 catcttgtaa cgcaccggcc gctggtgagc ccggatgccg ccagtacccc ggatgctcgc
     2161 cacgccagcg ctgcactcgc acgacgttct ccgcgccgcg gaagtagtcc tggttctcag
     2221 gttgggaaag ccaccggcgt tgactggccg ccttgctcgc ctgacggcac gcggcttggc
     2281 agcaataccg ctggtgccgc acattgcgcg gatccggccg gaacaacatc ccgcaaccca
     2341 ggcacttacg ctgtctttgg cgtgtcatgg atcggccctc cctggggcca gatcatgcgc
     2401 cgctgcgcca gctaagccca cgcagcgcgt gcgcgaagaa ccggcaagtc atcagcacag
     2461 ccaaggaaag gaccgacgaa gaagcgacga agaaccgaag aaaagccagg ttctagagat
     2521 gtgaatttga ggaagaaaag gcaggaagaa aaaacacttt cacaccgtca atttttgacg
     2581 actttcagaa cgccgatgac atctgacgga ggaagaggcg atcagggcag ccctccacga
     2641 acatgaaacc tccgggcacc cgggcttccc gcacgaggtg gtcacgcaca tgatggacga
     2701 acgctggaaa aatcctgaag cccgttaccc gcacaagggc gtcctgcgtt tcgaccggcg
     2761 tcgaccggat ggcgaaatcc tgcatccata cgcagggcgg aaagacgggg acgagtggat
     2821 tatggaactg tacctgccgt tcctgcagac ctacgcagga atgccggagc gcgagttcat
     2881 cgcgttgccg actgcgacgg ccgccgatgt gcgagctcgc gctgatcggc aatccacagc
     2941 gtgacgaatg gcaccagccc gaccgtcttt gtctgcggag tgcctctgga agcccaacct
     3001 ggcgtgggtt agaggaggat tttcaattct cgggggatag acaaaaattg ccaggtaggc
     3061 cttgcggaac agcgtgagca gcggttgcag cgagcgctcg aaaccgcctg ccatgacttc
     3121 acctctgaac tggataagct gcgtgccgac ggcaagctgg agcaggagcg gctcaaagcc
     3181 gccgaaaccc gggcgctatc ggaaatcggc cgcgagcggc aggtggccgg gcgcttgcag
     3241 aaggagcttg atacggctaa ccgtaaaacg gagcagggca atgtccggca tcgacgacgt
     3301 gcagaaactg caggctcaag tcggtaatct gcatcaacaa gtcggtgtgc tcgagggcaa
     3361 gctggatgcg ctgcgtaccg agaacgcgcg ttatgccgat gaagggttgc aggcgcgtga
     3421 tcaacgcgac caacgggcgt tgtcgctgac ggatgccgct gccaagcaaa aggtgttgac
     3481 ggcgaagcgg acagcgaaat cgacaggagc cccgcgcaag agcagtggcc cggtgggtaa
     3541 atcgccgcgg acgcgcaaag cctgaatttg ttggggtgga ttccgcgagg acgacgcacg
     3601 attcagcgtt agagcatcat gcacgcggta taagccgatg agttcaagca atcagcgcct
     3661 tcggacccgt agcgcccgtt acgtcgccgg atcagctaac cttatgccca aggctccttc
     3721 tggaccgact gcaacacatc cttcttatat cgttccgtga caagcaatga ctgacatcgt
     3781 attaagcagc gcggactaca agggcattca cggcgatatc gtcgccatcc tggaaagcag
     3841 ccgccgagcc gctgcccgca gcgtgaacgc gctgatgacc gcgacttatt gggaagtcgg
     3901 ccggcgggtt gtggagttcg aacaaggcgg ggaaaaccgg gcagcctacg gtcaagcgtt
     3961 gctggtgcga ctatctggcg atctgactaa acgattcggc cgcggttttg gggtagacaa
     4021 cctcgaactg atgcgactgt tttaccagac gtatccgcct gcggcgattt ccgaatcact
     4081 gattcggaaa tctgctgata cgagcgcgcc cccgaattcc gaattgctga ttcggaaatt
     4141 tgacctcgag cggttggcca ctgtttttcc tctctcgtgg acgcactacg tacacttgat
     4201 gcgtcgcact cgctc
//
LOCUS       DATGBK010000244         4763 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_280632, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000244 DATGBK010000000
VERSION     DATGBK010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4763
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280632"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1910)
                     /locus_tag="VKJ77_03615"
     CDS             complement(<1..1910)
                     /locus_tag="VKJ77_03615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HMC44393.1"
                     /translation="MTTPADSAKAKLREAALDYHEFPTPGKIAIAPTKQMINQRDLAL
                     AYSPGVAFACEEIVANPLNAARFTARSNLVGVVTNGTAVLGLGNIGPLASKPVMEGKA
                     VLFKKFAGIDVFDIELNEMDPLKLVDVICALEPTFGGINLEDIKAPDCFIVERECRKR
                     MKIPVFHDDQHGTAIVVAAAVTNGLVVVGKKIEEVKLVASGAGAAALACLDLLVELGM
                     KLENIMVTDLAGVVYKGRVELMDPDKERFARETSARTLADVMEGADVFLGLSAGGVLK
                     QEMVKGMAQKPLILALANPTPEILPELALEVRPDAVLATGRTDYPNQVNNVLCFPFIF
                     RGALDAGASTITREMEIAAVNAIAELARQEQSDIVATAYGIQDLSFGPEYLIPKPFDP
                     RLIVKIAPAVAKAAMDSGVATRPIEDMDAYEQHLQQFVYHSGTTMKPVFQLARSVAPD
                     KKRIVFAEGEEERVLRAVQIAVDEKIAKPILIGRPAVIAQRITKYGLRLTEGVDFTVV
                     DTDHDERYRDFWQTYHTMMARKGISAQMAKLEMRRRTTLIGAMLVKKGEADGMICGTI
                     STTHRHLHFVDQVIGKKEGCSVYAAMNALVLPGRQIFIVDTHVNVDPTPEQLCEITIM
                     AAEEVRRFGIVP"
     gene            2157..3188
                     /gene="thiL"
                     /locus_tag="VKJ77_03620"
     CDS             2157..3188
                     /gene="thiL"
                     /locus_tag="VKJ77_03620"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HMC44394.1"
                     /translation="MLSEFSLIERYFSQPAAAFAATDDEPRATLGIGDDCALLAPKRG
                     QHLAISTDMLVSGRHFFPDVSPWSLGYKALAVNLSDLAAMGAKPRAFTLALSMPTADE
                     SWLEAFSSGLFQMANQHGCELIGGDTTSGPHVCISITVFGDVPAAQALRRDAARPGDD
                     IWVSGVLGGARAGLGIRRGEWSMQDPADEAIAIKALEQPEPRVALGIALRGIAHAALD
                     ISDGLAGDLLHILKRSNVRATVDIDQIPRSGTLATLPETTQVHCILAGGDDYELCFTA
                     PVAVRAEIERVGTVQKVLLTRIGTIEGLAAEGRAASGTPQDPPLIGWRNKTGPVSLPD
                     TGFDHFHAD"
     gene            3178..3714
                     /locus_tag="VKJ77_03625"
     CDS             3178..3714
                     /locus_tag="VKJ77_03625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HMC44395.1"
                     /translation="MQTDPIIDTIDDTPPPKPSRRTSARFMLSHPLHILSLGFGSGLS
                     PIAPGTVGTLFAWASFVVFNPHLTVAEWAVLIAVGFVAGCWFCGFTAKKMGISDPSPV
                     VWDEIIAFWLVLLFVTPATFTGQLWAFIVFRFFDMVKPPPISYFDRRLKGGFGIMFDD
                     IAAAFFTLLVIALWRMTI"
     gene            3769..4269
                     /locus_tag="VKJ77_03630"
     CDS             3769..4269
                     /locus_tag="VKJ77_03630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013696612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HMC44396.1"
                     /translation="MATDKVVHQLAIRAGNKLRDERLMLATAESCTGGMVAAAMTDIS
                     GSSAWFERGFVTYSNLAKTEMIGVPADMIERHGAVSEPVAKAMAEGALRNSRAQVSLS
                     ITGVAGPGGGTETKPVGMVSFAWSNRLHTAVETQQFKGDREQIRTQAAAYALRGLLEL
                     LERRER"
     gene            4342..>4763
                     /locus_tag="VKJ77_03635"
     CDS             4342..>4763
                     /locus_tag="VKJ77_03635"
                     /inference="COORDINATES: protein motif:HMM:NF016330.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HMC44397.1"
                     /translation="MPAFVYDTAQIIKWLGSHTVAKARGYVDEVTRLHWDDDVLRANV
                     QGTQRQPYTVEVMFNDHNGALSAQGHCSCPVGFGCKHAAAVLLASAADRPRESDIVRP
                     EVAGWLEGFRSRFASTRNTSAKKPGESSGALALVYVLGT"
BASE COUNT          855 a         1515 c         1455 g          938 t
ORIGIN      
        1 ttcggcacga taccgaaacg gcgcacttct tccgccgcca tgatcgtgat ctcgcaaagc
       61 tgctcggggg tagggtccac gttcacgtgc gtgtcgacaa tgaagatctg ccggcccggc
      121 agcaccagcg cattcattgc cgcatagacg ctgcagcctt ccttcttgcc gatcacctga
      181 tcgacgaaat gcagatgccg gtgcgtcgtg ctgatcgtgc cgcagatcat gccgtccgct
      241 tcacccttct tgaccagcat cgcgccgatc agcgtggtgc ggcggcgcat ctccagcttc
      301 gccatctgcg cgctgatgcc tttcctggcc atcatggtgt gatacgtctg ccagaagtcg
      361 cgataccgct cgtcgtgatc ggtatccaca accgtgaagt ccacgccctc cgtcaaacgc
      421 aagccgtact tcgtgatgcg ctgcgcgatc actgccggtc gtccgatcag gatcggcttg
      481 gcgatcttct cgtccaccgc gatctgcacc gcgcgcagca cgcgctcctc ttcgccttcg
      541 gcgaacacta tgcgcttctt gtccggcgcc acgctgcgtg cgagctggaa caccggcttc
      601 atggtcgtgc cgctgtgata gacgaactgc tgcagatgct gttcgtacgc gtccatgtct
      661 tcaataggac gcgtggccac acctgaatcc atagcggcct tggccacggc cggcgcgatc
      721 ttcacgatca ggcgcggatc gaacggtttc ggaatcaggt actcgggacc aaacgacaag
      781 tcctggatac cgtaagcggt agccacgata tcgctttgtt cctgccgcgc cagttccgcg
      841 atcgcgttca ccgcggcaat ttccatctcg cgcgtgatcg tgctcgcgcc tgcgtcgagc
      901 gcaccgcgga aaatgaacgg gaagcacagg acgttattga cctggttcgg atagtccgtg
      961 cggccggtgg cgagcactgc gtccggacgc acttccagcg cgagttccgg caggatttcc
     1021 ggcgtcgggt tggcgagcgc gagaatcagc ggcttttgcg ccatgccctt gaccatctcc
     1081 tgcttcaaca cgccgccagc ggacagtcca aggaatacgt cggcgccttc catcacgtcg
     1141 gcgagcgtac gcgccgaggt ttcgcgcgca aaccgttcct tgtccgggtc catcaattcc
     1201 acgcggccct tgtagaccac gccagccagg tcggtcacca tgatgttttc gagcttcatg
     1261 ccgagttcaa ccagcaggtc cagacaggcc agcgctgccg cgcccgcgcc cgaggcaacc
     1321 agcttcactt cttcaatctt cttgccgacc acgaccaggc cgttggtaac agcagccgcg
     1381 accacgatcg ccgtgccgtg ctgatcgtcg tggaacaccg gtatcttcat gcgcttgcgg
     1441 cattcccgct caacgatgaa gcaatccggc gccttgatgt cttccaggtt gatgccgccg
     1501 aacgtgggtt cgagcgcgca gatcacgtcg acgagcttca gcgggtccat ctcgttcagc
     1561 tcgatgtcga acacgtcgat gccggcgaac ttcttgaaca gcactgcctt gccttccatg
     1621 accggcttcg acgcaagcgg gccgatattg ccgagcccga gcaccgccgt gccgtttgtc
     1681 acgacgccga ccaggttgct gcgcgcggta aaacgcgcgg cattcagcgg attggcgacg
     1741 atttcctcgc acgcgaacgc cacacccggt gaatacgcca gcgcgagatc gcgctggtta
     1801 atcatctgct tggtgggggc aatcgcgatt ttgccggggg tgggaaactc gtggtaatcg
     1861 agtgcggctt cgcggagttt ggctttggcg ctatcagcag gagtggtcat gaggcgtctg
     1921 gctttaggcg agattagaat agaagttcga acgcattgta gcgccaatca acgggctctc
     1981 cggatggcaa taccggcaat tcgcggcgca tagcccattt ggacaaggcc tggaaaacca
     2041 gcatgcccgc caagccggca gcgggttcac gccgcaaaat tcccttattg agatgaaacg
     2101 cgcgtcaaca ggcgcgcatc gtccctaact ctccctcgac aattgccgga tcgccgatgc
     2161 tctcagagtt ttccctgatc gaacgatatt tctcccagcc cgccgccgcg tttgcggcaa
     2221 cggacgacga gccgagagcg acgcttggta taggtgacga ctgcgcgttg ctcgccccga
     2281 agcgcggtca gcacctggca atttccaccg acatgctggt ctcgggccgc catttttttc
     2341 ccgatgtctc cccgtggtcg ctgggttaca aagcgctggc agtgaacctg tcggacctcg
     2401 ccgccatggg cgcgaagccg cgcgcgttca ccctggcgtt gtcgatgccg acagccgatg
     2461 aaagctggct cgaagcgttc agcagcggtc tattccaaat ggcgaaccag cacggctgcg
     2521 agctgattgg cggcgataca accagcggcc cgcacgtgtg catcagcatc accgtgttcg
     2581 gcgatgtccc ggccgcgcag gcgctgcgcc gcgatgcggc gcgcccgggc gacgacatct
     2641 gggtgtccgg cgtgctgggt ggcgcgcgtg ccgggctcgg tatccgccgc ggcgaatggt
     2701 cgatgcaaga tcctgccgac gaagccatcg cgatcaaggc gctcgaacag ccggaaccgc
     2761 gcgtggcgct cggcattgcg ttgcggggta tcgcgcacgc cgcgctcgat atctccgacg
     2821 gtctcgccgg cgacttgctg catatcctga agcgctcgaa cgtgcgggcg acagtcgata
     2881 tcgatcagat accgcgttcc ggtacgctcg ccaccctgcc cgaaaccacg caggtgcatt
     2941 gcatcctggc gggcggcgat gactacgaac tctgcttcac cgcgccggtc gccgtcaggg
     3001 ccgaaatcga gcgcgtggga acggtgcaga aagttttgtt gacgcgtatc ggtacaatcg
     3061 agggtctggc cgccgaagga cgagcggctt ccggcacacc ccaagacccg ccgctcattg
     3121 gctggcgcaa caaaaccggt ccggtttctc tgccagacac aggcttcgac cattttcatg
     3181 cagactgatc cgatcatcga cacaatcgac gacacaccac ccccgaagcc atcgcgccgc
     3241 acgagcgcgc gcttcatgct gtcgcatccg ctgcacatcc tgtcgctggg tttcggcagc
     3301 ggcttgtcgc cgatcgcgcc cggcacggtc ggcaccttgt tcgcgtgggc atcgttcgtg
     3361 gtgttcaacc cgcacctgac ggttgccgaa tgggccgtgc tgatcgccgt gggttttgtg
     3421 gccggctgct ggttctgcgg tttcacggcg aagaaaatgg gcatttccga tccgtcgccg
     3481 gtagtctggg acgagatcat cgcgttctgg ctggtgctgc tgttcgtcac gccggccacg
     3541 ttcaccgggc aattgtgggc gttcatcgtg ttccgtttct tcgacatggt gaaaccgccg
     3601 cccatcagtt atttcgaccg ccggttgaaa ggcggtttcg gcatcatgtt cgacgatatt
     3661 gccgctgcgt tcttcacgct gctcgtgatc gcactatggc gcatgaccat ttgatttccg
     3721 tcttgcccgc atctcacgtt tccgaccgcc cccacccgag gctttgccat ggctaccgat
     3781 aaagtcgtcc accagctcgc catccgtgcc ggcaacaaac tgcgcgacga gcggctgatg
     3841 ctcgcgaccg ccgaatcgtg caccggcggc atggtcgccg ccgccatgac cgatatttcc
     3901 ggcagcagcg cgtggttcga gcgcggtttc gtcacctatt cgaacctggc gaagaccgag
     3961 atgatcggcg tcccggccga catgatcgag cgccacggcg cggtcagcga accggttgcc
     4021 aaagccatgg cagaaggcgc gctgaggaat agccgggcgc aggtatcgct gtcgattacc
     4081 ggtgtggccg gaccgggcgg cggcacggaa accaagcccg tcggcatggt gtctttcgca
     4141 tggagcaacc gcttgcacac ggcggtggaa acgcagcaat tcaagggcga tcgcgagcag
     4201 attcgcaccc aggcggcagc gtacgcgctg cgcggcttgc tggagctatt ggaacgcagg
     4261 gaacggtgag tagacggtga tcgagcggat ggcggcaaga cagggtggga caggaacggc
     4321 catgcatgga cgggtttgct gatgccggcg tttgtgtacg acacggctca aatcatcaaa
     4381 tggctcggct cgcataccgt tgccaaggca cgcgggtatg tggacgaagt gacgcgtctg
     4441 cactgggacg acgacgtact gcgcgccaac gttcaaggga cgcaacgcca gccttatacc
     4501 gtggaggtga tgtttaacga tcacaatggc gcgctttcag cgcaaggcca ttgttcgtgc
     4561 ccggtaggat tcggctgcaa gcacgcagcg gccgtattgc tcgcgagcgc cgcggacaga
     4621 ccgcgcgagt ccgacatcgt gcgcccggaa gtggcgggct ggcttgaagg attccgctcg
     4681 cgcttcgcct ccactcgcaa cacctccgca aaaaagcccg gcgagtcgag cggtgcgctc
     4741 gcgctcgttt atgtgctggg aac
//
LOCUS       DATGBK010000245         2138 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_211069, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000245 DATGBK010000000
VERSION     DATGBK010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2138
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211069"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..1165)
                     /locus_tag="VKJ77_03640"
     CDS             complement(62..1165)
                     /locus_tag="VKJ77_03640"
                     /inference="COORDINATES: protein motif:HMM:NF014714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44398.1"
                     /translation="MRVFFSTGEASGELLATDLLGAMRDTGTVIDAEGIGDARMESAG
                     VTLWHRTRGWASMGPVDALRKIPRLLATMWETALRLRRNPPDLIVLVDFGAFNVRLAK
                     SLRMLGYRAPILYYFPPAAWLDKAKRARTVARTTQPLTAFAHQRDFYLSLGLRVGYEG
                     HPLVSTIAPRPLRAVPNRNAGTIALLPGSRRSEIELHTPRLLDAVALVRLVRPDISAT
                     LVAIDDEAQHAFAHWLALRSPQPVTIVRSARDALAAADVAVIASGTAVLEAALLQTPA
                     IGLYVLSETQAKIARRVYHGKYITLPNLVTDEPIVPELLQEAATPDALAAAIVDLLDA
                     PQRQQAGYIRMRAALGPPDALARCAAFALRTAG"
     gene            complement(1189..1956)
                     /gene="lpxA"
                     /locus_tag="VKJ77_03645"
     CDS             complement(1189..1956)
                     /gene="lpxA"
                     /locus_tag="VKJ77_03645"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: protein motif:HMM:TIGR01852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HMC44399.1"
                     /translation="MIHPSAIVHPSAKIDRTADIGPYCLVGENVRVGARTKLLAHAVV
                     TGYTTIGEDTTIHPFASIGASSQDRKAVEEIAYTTIGDRTTIREYVSIHRATGEGQVT
                     SVGDDCLILAYVHIAHNCIVGDDVTMSNLAQLAGHCVVEDHAGIGGMVGTHQFVRIGQ
                     YSFIGGYTKVVRDVPPFLLVEGNPAEVYGLNSVGLRRAGFKRDVLSELKEAYKTIYRS
                     DRNLSQAASSLRESVSTDEGRALLAFLEADSIRGIMK"
     gene            complement(1953..>2138)
                     /locus_tag="VKJ77_03650"
     CDS             complement(1953..>2138)
                     /locus_tag="VKJ77_03650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44400.1"
                     /translation="RPVVPGDQLMMEAYVIKTKMNIGWVRAEASVDGSIVCSAELTFS
                     ISVDQSAFANDAPILHE"
BASE COUNT          431 a          664 c          656 g          387 t
ORIGIN      
        1 gcaggggcgc gacgatatgc cggcgatcgt gcagatccga agtatggtaa atgcgcacgc
       61 atcaacctgc ggtgcgcaga gcgaacgcgg cgcagcgcgc cagcgcatcc ggtggaccaa
      121 gcgcggcgcg catgcggatg tatcccgcct gttgacgttg cggagcatcg agcagatcca
      181 cgatcgccgc ggcaagcgca tcgggcgttg ccgcctcttg cagcagttcg ggcacgatcg
      241 gttcgtccgt cacgagattc ggcaacgtaa tgtatttgcc gtgatacacg cggcgcgcga
      301 ttttcgcttg cgtttcggat aagacgtaga gcccgatggc cggcgtttgt aacagggccg
      361 cctcaagcac ggcggtgccg gatgcaatga ccgcaacgtc cgcagccgca agcgcgtcac
      421 gcgccgaccg gacgatcgtc accggttgcg gacttcgcaa tgcgagccaa tgcgcgaagg
      481 catgctgcgc ttcatcatca atggcgacca gggtcgcgga aatatcgggc cgcaccaagc
      541 gcacgagcgc gacggcgtcc agtaagcgcg gcgtatggag ttcgatctcc gagcggcggc
      601 tcccgggcaa taacgcgatc gttccggcgt tgcggttagg cacggcgcgc agcggccgcg
      661 gcgcgatggt ggaaacgagc gggtgacctt cgtatccgac ccgtaggcca agcgacaaat
      721 agaaatcgcg ttggtgcgca aaggcggtca acggttgcgt cgtacgcgcg acggtgcgcg
      781 cgcgcttggc cttatcgagc cacgccgcgg gcgggaaata gtagagaatc ggtgcgcgat
      841 agccgagcat gcgcaacgac ttggccaagc gcacgttgaa cgcgccgaag tcgacgagca
      901 cgatgagatc gggcggattg cgccgtaagc gaagtgcggt ttcccacatc gtcgcaagca
      961 gtcgcggaat tttccgaagt gcatcgaccg ggcccatcga cgcccagccg cgcgtccgat
     1021 gccacagcgt tacgcccgcc gactccatcc gcgcatcgcc aataccctcg gcatcgatga
     1081 cggtgccggt atcgcgcata gccccgagca aatccgtcgc cagcagctcg ccggacgctt
     1141 cgcccgtact aaagaaaacg cgcacggctt acgctcatga tgccggcgct atttcatgat
     1201 cccacggatg ctgtcggctt cgaggaaggc caatagcgcc cgtccctcat ccgtcgacac
     1261 gctctcgcgc agcgaacttg ccgcctgcga caagttgcga tccgagcggt agatcgtttt
     1321 gtacgcctct ttcaactcgc tcagaacatc gcgcttaaat ccggcgcggc gcaaaccgac
     1381 actgttgaga ccgtacactt cggccgggtt tccttcaacc agcaaaaacg gcggaacatc
     1441 gcgtacgacc ttggtatagc cgccgataaa cgagtactgt ccgatccgca cgaactggtg
     1501 cgtgccgacc atgccgccga tgcccgcatg gtcttcgacg acgcaatgcc cggccaattg
     1561 cgcgaggttc gacatcgtta catcgtcgcc gacgatgcag ttgtgggcga tgtgaacgta
     1621 ggcaagaatt aaacagtcgt caccgaccga cgttacttga ccttcgcccg tcgcgcgatg
     1681 aatcgagaca tattcccgga tcgtagtgcg gtcgccgatc gtcgtatacg caatttcctc
     1741 gacggccttg cgatcttgcg atgacgcacc gatcgaagca aatggatgta tcgtcgtgtc
     1801 ttcgccgatc gtcgtgtagc cggtaacgac ggcgtgcgcg agcagcttcg tgcgcgcgcc
     1861 gacgcgcacg ttttcaccga ctaaacagta ggggccgata tccgccgtgc gatcgatctt
     1921 cgccgacgga tgaacgatgg cgctggggtg aatcattcgt gcaggatcgg cgcgtcgttc
     1981 gcaaatgctg actggtcaac cgaaatcgag aacgtcagct cggccgaaca cacgatcgaa
     2041 ccgtcgacgc tggcttccgc tcgcacccag ccgatattca tttttgtttt gataacgtac
     2101 gcttccatca tgagctgatc gcccggcacg acgggccg
//
LOCUS       DATGBK010000246         3406 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_165109, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000246 DATGBK010000000
VERSION     DATGBK010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3406
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165109"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(307..1712)
                     /locus_tag="VKJ77_03655"
                     /pseudo
     CDS             complement(307..1712)
                     /locus_tag="VKJ77_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350563.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
     gene            1944..2120
                     /locus_tag="VKJ77_03660"
     CDS             1944..2120
                     /locus_tag="VKJ77_03660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HMC44401.1"
                     /translation="MLKWALFFAIVAVVAGLLGFTGVAAGAASIAKFLFVLFLILCVV
                     FLVLGFIVTKKIVD"
     gene            2296..2457
                     /locus_tag="VKJ77_03665"
     CDS             2296..2457
                     /locus_tag="VKJ77_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 family protein"
                     /protein_id="HMC44402.1"
                     /translation="MLHYAVVFFIIAIIAAVFGFTGIAAGAAEIAKILFYIFLVVFVV
                     TLLLGVFRT"
     gene            2684..3277
                     /locus_tag="VKJ77_03670"
     CDS             2684..3277
                     /locus_tag="VKJ77_03670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HMC44403.1"
                     /translation="MSKSSAVKAAPAPSKGPAGKSDPFVLDMEKIRASARQHMDDGPV
                     TSTYGADKEVVLKLLNDSLATEIVCTLRYKRHYFMAKGIHSEAVASEFAQHATEEQEH
                     ADTIAERIVQLGGEPNFAPDSLASRSHSEYKEGANLIDMIRENLIAERIAIDTYSEIV
                     RYLGEKDVTTRRIFETILAVEEEHADDMADLLDGLDG"
BASE COUNT          693 a          981 c         1010 g          722 t
ORIGIN      
        1 ccggtgtccg gcagaaaaag cagttgcaaa agcagttgcc agacacattg cggccttggc
       61 tacgaccgat ctttgaaacg gttttgccgg gtttgaacga actacaaaac ccatggcgac
      121 taacgcttcg atcgacccca ccggtctgat aaatcataaa aaactgcgcg tttgcaagct
      181 gtaggcgctg atgtttttat cgtgtaggcg cggtctgcaa cttgtgtcgg cgccgtccta
      241 caagctcagt ctgagcgcga gtaaagtgcc aacacgaccc aacacgagcc aacaggcgat
      301 ggatctttaa gcatcaaagt tacgcgcgcg gggcatggtg acgcggatgt cggtgccatg
      361 cggctggcgt cgttcgatct ctatacgacc gccgcgcgcg ctgacccgct ggcgcatccc
      421 cagcagtccg tgcgtgtgcg tgcgctgcag atcctgcggg cggatgccga cgccgtcatc
      481 ggaaatatgc atcgataccc gctcgtcatc cagcgccagc gcaatcgaca cgctcgatgc
      541 ccgcgcgtat ttggccgcgt tcgtcagcga ttcctgcgcg acccggaaca acgcgatttc
      601 tacttcttcg ccgagcttga tgtcgtcatc ggggagcgcg agttcgagcg tccagccggt
      661 gcgttgcgcg gtttcatcgg cgagagtgcg caacgccgtg accagcccaa aattggcaag
      721 aacagttggc cgcatgtctt cgataatccg ccgcttcagc gcaatcccct gatcgagatt
      781 cgcaagcgca cggccaagtt tctcggccat cgcgggctcg acgcctttga gcttgttgtt
      841 gacccacgcc acatccatct tgctggccgt caggatcgaa ccgagttcat cgtgcagttc
      901 gcgggcaagc tgggttttct cgttttcact caccgattgc aaatgccacg caagcgcctc
      961 aagttgccgc gtgcggtcga acacgagctg gtcgagctct tcttgctgcg taatcagttt
     1021 ttgctgcaca cggtcttgct tgtccagctg gataccgaga ttgcgaaaca acagcaggaa
     1081 caacacgata ttcagtgcgc acaacgcgcc cacgcagaac gtggaaatgc gctggtcggc
     1141 gcggctcgcg tcgagcgcgg actgcgcccg gcgttcttca ttcagacgca gcagggcgag
     1201 cgcgctgtcg aggatatcgg tgctcgatgc ggtgtccgaa ccggagcgag caacgagtcc
     1261 cgcgttgatc cgcgcatcga gggtcgcgct gacctgcttg aaactggcga gcgcggtgtc
     1321 gtccgctttg cggcgatagt acgcatccag cgacgcaacc gtttgtttga tcctcgccgc
     1381 cgctgcgttg tagtgggcgg tgtaggtgtt gtcgggcgca aggcgaaacg cgcgttcatc
     1441 ggcggtcagc gacgcgatgt ccgccgccag cgcggtcaac tgcgtggtgg cgcctttcgc
     1501 gtcgagggcg gtctcgtatt ccgcggcaat acgcatgcgg ccggattcga gtatcccagc
     1561 ccgccaacgg taatcacaat ggctacggtc atcgcgacgg cccagctcca acggcgcatc
     1621 caaccgttca gacgcgtgct gaaccgggtt gcgcgccgcg tgatgccgtc taccggattc
     1681 gccgcgccgc ctttgtgcaa agaggaagtc ataggagccg ccgggtttac tgtccggcca
     1741 gtgtaacttt tcacgccgtg ccgggctggt cgaattacgt tgattagcga cagtgattgg
     1801 cgacaggccg gattaagccc ggagtgaatt gaaagcgttt gtcggcgacg tcctacacga
     1861 aaaacggcgc gcatccagat ggcagttcat aggcgcctcg ctaacatcct gtttattagt
     1921 ccaacctttt tggggaaccg atcatgttga agtgggcatt gtttttcgcc attgtcgctg
     1981 tcgtcgcggg cttgctcggc ttcaccggcg tggcagcggg cgcggccagc atcgcgaagt
     2041 tcctgttcgt gctgttcctg atcttgtgcg tggtattcct cgtgctcggt tttatcgtca
     2101 cgaagaaaat agtcgactag cggccgtggc catcgttact taaacctcgc acgcctcgac
     2161 cggctttatc taaagcctgt tctacgggtg gccgacttca cgcttttccg gcaatcgtcc
     2221 acccgagtca ttgtgaaagc cggattcgat gcctaatacg aggcctataa gaacccacca
     2281 agaggaaagg tcgccatgct tcattacgcc gttgtttttt tcattattgc gattatcgcg
     2341 gctgtgttcg gcttcaccgg gattgcagca ggcgccgcgg agatcgcaaa gatcctgttc
     2401 tacatctttc tcgtggtttt cgttgttacg ttgctgctgg gcgttttccg aacgtgatgt
     2461 tcgcgagagt cgggccatat acgcgacagg cctgttagcg aaccgagatg cagaagcgag
     2521 gtagacagta agacagtaag cgcgtggtac gagcaggcac gccgtatgcg ggcgatgacg
     2581 agagtgactg aggacggcgg tccgggccta tatccggcga ggctgccgcc acgaactgtc
     2641 caaccgccga acaaaagatc cattctcttt ctggagcaca tcaatgtcga aatcgtctgc
     2701 tgtaaaagct gcaccggcac catcgaaggg acccgccggc aagtccgatc cgtttgtgct
     2761 ggacatggaa aaaattcgcg ccagcgcgcg tcagcacatg gacgatggcc ccgtcacgtc
     2821 gacgtatggc gcagacaagg aagtcgtgct gaagctgctg aacgattcac tcgcaaccga
     2881 gatcgtctgc acgttgcgct ataaacgcca ttacttcatg gcgaagggca tccattcgga
     2941 agctgtcgcg tcggaattcg cgcagcacgc gacagaagag caggaacatg ccgatactat
     3001 cgccgagcgg atcgtccagt tgggcggcga gcctaatttc gcacccgaca gcctcgcgtc
     3061 acgctcgcat tccgagtaca aggaaggcgc caatctgatc gacatgattc gcgagaactt
     3121 gattgcggag cgcattgcga tcgatacgta tagtgaaatc gttcgatacc tcggcgaaaa
     3181 agatgtcacc acacgccgga tcttcgaaac gatcctggcg gtcgaggaag agcacgccga
     3241 cgacatggcc gacttgctcg acgggctcga cggctgatcg tgcggtcgcg gtaaatgaat
     3301 accgaagccc caggacgacg cgcggcggga tgattcccgc cgcgcgtcgt cggtacaatg
     3361 attcaccata aaaatggccg caggcagcgc agatgattcg agtgtt
//
LOCUS       DATGBK010000247         1838 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_303598, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000247 DATGBK010000000
VERSION     DATGBK010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303598"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1680)
                     /locus_tag="VKJ77_03675"
     CDS             complement(<1..1680)
                     /locus_tag="VKJ77_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HMC44404.1"
                     /translation="MLRKTPLAAAIMTVVATPAVVPLYAHAQAAPVSKTDQTAQAEQA
                     AQVAPLVENAALPAVHVSGQAITPDFQPEKSSVGAKVPTALRDIPQAAVVVPKAVLQS
                     QAATSFSDALRNVPGVTLGAAEGGQIGNNINLRGFSARTDIYLDGFRDRGQYYRDTFD
                     LESIDVLYGPSSLYFGRGSTGGVINQVSKQAELKAHASVSAMVGTSDRYRTTFDINQP
                     LSDTSAVRLNAFGQDLGSTRDVMKSKDYGFAPTVRFGIGTPTEVTLSALIQHNRDQPD
                     YGIPPVNGAPVPVSKGQFYGFEGDRTIQDVQTLSARIQHRFNDNLTLRNETQFSHYGT
                     EATATNAAAVLTGPLGTSTALANGNYTSLPLSSLYVRLQGKDRNINDHSVYNTTDIDY
                     KFNTGFLKHEVIAGIDLSHETYSNQSFTATTPGLPSNTIAIVPLLNPQYATRPANTQE
                     VATNLAESSANGVGIYANDTVSVGQYWKVVGGLRWDRYEASIKNTLNLPSYATQTNYF
                     TSVRGGIIFQPTDWQSYYVSYGTSFNPSLEALTLTNNQQNTPPESNRSYEVG"
BASE COUNT          315 a          529 c          607 g          387 t
ORIGIN      
        1 gcccacttca taggaacggt tcgattccgg cggtgtgttc tgctggttgt tggtcagcgt
       61 cagcgcttcc agcgacgggt tgaacgacgt gccgtacgac acgtagtacg actgccagtc
      121 ggtcggctgg aaaatgatcc cgccgcgcac gctggtgaag taattggtct gcgtagcgta
      181 cgaaggcagg ttgagggtgt tcttgatcga cgcctcgtaa cggtcccagc gcaagccgcc
      241 caccaccttc caatactggc cgacagacac cgtatcgttg gcataaatgc cgacaccgtt
      301 cgcactcgat tccgcgaggt tggtcgccac ttcctgcgta ttggccggtc gcgtggcgta
      361 ttgcggattg agcagtggaa cgatcgcgat ggtgttcgac ggcaagcccg gggtcgttgc
      421 ggtgaacgac tggttgctgt acgtctcgtg gctcaagtca atgcctgcaa tcacctcatg
      481 cttgaggaaa ccggtgttga acttgtagtc gatatcggtc gtgttgtaga ccgagtgatc
      541 gttgatgttg cggtccttgc cctgcaacct cacgtacaac gacgacaacg gcaacgacgt
      601 gtaattcccg ttggccagtg ccgtcgatgt ccccagcggc ccggtcagca cagccgccgc
      661 gttggtcgcg gtcgcttcgg tgccgtagtg gctgaactgg gtctcgttgc gcagtgtgag
      721 gttgtcgttg aaacgatgct ggatgcgcgc cgagagcgtc tgcacgtcct ggatcgtccg
      781 atcgccttcg aagccgtaga actggccctt gctgaccggc accggggcgc cgttcaccgg
      841 cggaatgccg tagtccggct ggtcgcggtt gtgctggatc aacgctgaca atgtgacttc
      901 cgttggcgtt ccaatgccga agcgcacggt cggcgcgaag ccgtagtcct tgctcttcat
      961 cacgtcgcgg gtggacccga gatcctgacc gaacgcgttg agccgcacag cggatgtgtc
     1021 ggacagcggc tggttgatgt cgaaggtggt gcggtagcgg tcgctcgtgc cgaccatcgc
     1081 ggacaccgat gcatgcgctt tcagctccgc ctgcttgctc acctggttaa tcacgccgcc
     1141 cgtggagccg cgcccgaaat agagcgagga cgggccatac agcacgtcga tggattcaag
     1201 gtcgaacgtg tcccgatagt actggccgcg atcgcggaag ccatcgagat agatgtcggt
     1261 gcgcgccgag aaaccgcgca agttgatgtt gttgccgatc tgcccgcctt ccgcggcgcc
     1321 tagggtgaca ccggggacgt tgcgaagggc atcggagaaa gaggttgctg cctgggactg
     1381 cagcacggct ttcggaacca ccacagccgc ttggggaata tcgcgcaagg cggtcgggac
     1441 cttggcgcct acgctcgact tttcgggctg gaaatcgggc gtgatggctt gaccggagac
     1501 atgcacggcc ggcagcgcgg cgttttcgac gaggggtgcg acttgtgcgg cttgttccgc
     1561 ctgggcggtt tgatcggtct tgctgaccgg cgcggcttgc gcgtgagcat aaagcggcac
     1621 gacagcaggc gtcgccacca cggtcatgat cgccgcggcg agcggtgtct tcctcaacat
     1681 gtgtttcccc gagtactaga tgtggtcgat agccggcgcc gttgcgccat gccggtcaat
     1741 tgcttccgcg atgcccgcgg cggcgtgagc agttagcaat gggcgttgcc gaagcagcag
     1801 tccggcgttc caacggacgc acgccatttt cttcatag
//
LOCUS       DATGBK010000248         5992 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_142162, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000248 DATGBK010000000
VERSION     DATGBK010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5992
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142162"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..367
                     /locus_tag="VKJ77_03680"
     CDS             <1..367
                     /locus_tag="VKJ77_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006765447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HMC44405.1"
                     /translation="CAPVHDGHGYAIYAIARPVAGSMFRGWAEIVKDGRRVERSGLIG
                     PRYENPQAAAEYALEWSRRWIAAQSTRVTHPVQTAADAPHRAEPVANAASHVQSDPKH
                     ELTAAPEHIEIRRYADVQG"
     gene            complement(479..1984)
                     /locus_tag="VKJ77_03685"
     CDS             complement(479..1984)
                     /locus_tag="VKJ77_03685"
                     /EC_number="2.7.7.13"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase"
                     /protein_id="HMC44406.1"
                     /translation="MTALDITLNTTPLTPAAAEIKLRIQPVILAGGAGTRLWPMSREH
                     FPKQLIGLIGDQSLLQSTAQRLDGLTYGTARIDDAIIVCGEDHRFTTADQLRASGRRA
                     RLVLEPLARNTAPALTVGAMHAMAAGEDAILVVMPADHVVTDTEAFHKAIGTGAKCAQ
                     DGAIVTMCIVPTHAETGYGYIKVGQQMLSSGAWQLEKFVEKPHLELARQYVSSGEYWW
                     NAGIFIVRASVWLKAIEHFQPAIYAACRAACDAGTHDGEFFRLDKQAFAASPSDSIDY
                     AVMEQLAGDQSVCSGAVVPLNAGWSDVGSWDAIWKILPKDGEENVARGRVMFQGSSST
                     YAHSEGRLIACVGTHNLVIVETADAILVADKESVQDVKAIVGRIKAEQGKEAADHRKV
                     HRPWGHYDSIDNGERFQVKRIVVKPGARLSLQMHHHRAEHWVVVRGTALVTRGSETFI
                     LAENESTYIPIGVQHRLENPGKMPLEMIEVQSGTYLGEDDIVRFDDKYGRQ"
     gene            2522..3892
                     /locus_tag="VKJ77_03690"
     CDS             2522..3892
                     /locus_tag="VKJ77_03690"
                     /EC_number="2.7.8.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004525082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HMC44407.1"
                     /translation="MLSVLSRMIDIAMVALGALLAASLHAGNAVWLDDMQSTLLAFNC
                     VLVIMTFPSFGIYQSWRGKPVYDLLWRVTLAWLMVEGAGVLLTFSVHRADLLSRLWLL
                     YWGVAAAALLMLSKAVVHATLKLIRREGFNQKAVAIVGAAPYGEFLIEQMRSRPEAGF
                     SPVYVFDETFPELTLAGVPVSRDLGDLTQLVRGRAIRELWLALPISQERTIHKLVTEF
                     RDDFVNIRFIPDVRSLSFFNHAVVDLLGVPAINLAASPITDLKVLPKRVFDRLFAAGV
                     LLCLAPLLIVLAVAVKMSSPGPVFFKQKRKGIDGYEFEIYKFRSMRVHKETAGHVTQA
                     KKGDKRVTRVGAFLRRTSLDELPQFINVLRGEMSVVGPRPHALEHDDIYKDLVKGYMY
                     RYRIKPGITGWAQVNGFRGETDRIEKMMGRVKLDLYYMQHWTFGLDMKIVAMTLWKGF
                     AGSNAY"
     gene            3944..5335
                     /locus_tag="VKJ77_03695"
     CDS             3944..5335
                     /locus_tag="VKJ77_03695"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011881534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HMC44408.1"
                     /translation="MKLTIIGSGYVGLVTGACLADIGNDVLCLDLDERKIAILNSGGV
                     PIHEPGLQDVIARNRAAGRLSFSTDVQAAVEHGEVLFIAVGTPSDEDGSADLQYVLAA
                     ARDIGRYMNNFKVIVDKSTVPVGTARRVKAAIDQELATRGVQHMFSVVSNPEFLKEGA
                     AIDDFTRPDRIVLGCDDDVPGERARERMKRLYSPFNRNHERTLYMDVRSAEFTKYAAN
                     AMLATRISFMNELANFADRVGADIEAVRRGIGSDPRIGYDFLYAGCGYGGSCFPKDVR
                     SLIQTAGEYDEQMEILKAVTSVNEAQKQTLANKIVARLGDDLRGKKFALWGLAFKPNT
                     DDMRDAPSRVLIAALLERGASISAYDPVATDEARRVIALDLSDTPALLARLTYANDHT
                     EALDNADALIIVTEWKVFKSPDFDGMKRRLKTPLIFDGRNLYEPETMNEIGVEYHAIG
                     RGVRQAVKAPVAA"
     gene            5461..5916
                     /locus_tag="VKJ77_03700"
     CDS             5461..5916
                     /locus_tag="VKJ77_03700"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010110222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HMC44409.1"
                     /translation="MFRNVLIVCHANVCRSPAAEMLFRAYAGKLAGKGARRAIEFRSA
                     GLFAEEGRNIDPTMYRLLAERDVDPSGHSARRLDESMARAAELILVPERQQIAAIEQM
                     APHTRGKVHLLGKWEDSEVADPYGGHEVAYRESFGLIERLVQGWLNKIW"
BASE COUNT         1176 a         1748 c         1828 g         1240 t
ORIGIN      
        1 ctgcgccccc gtgcatgacg gccatggtta cgccatctac gccatcgcgc ggccggtcgc
       61 gggcagcatg ttccgcggct gggcagaaat cgtgaaggac ggccgtcggg tggaacgttc
      121 tggcctgatc ggtccgcgct acgagaaccc gcaggcggcg gcggagtacg cgctcgaatg
      181 gtcccgcaga tggatcgcgg cgcaatccac gcgcgtgact catcccgtgc aaaccgctgc
      241 agacgcgccg catcgtgcgg agcccgtcgc caacgcggcc agccacgtgc agagcgatcc
      301 gaagcatgaa ctcaccgcag cgccggagca cattgagatc cgccgctatg cggacgtgca
      361 aggctaacgc tggatagtgc acagggccag gtctcttccg gtctgtctgg tttgactcaa
      421 aatggtttga ctcgaaacgc tgtgcggcgc gcgattcaga tgcgccgcac agcgtttttt
      481 attgccggcc gtacttgtcg tcgaaacgga caatgtcgtc ttcgcccaga tacgtgcccg
      541 actgcacctc gatcatttca agcggcatct tgcccgggtt ttcaagccgg tgctggaccc
      601 cgatcgggat gtaggtggat tcgttttccg cgagaataaa cgtctcgctg ccgcgcgtga
      661 caagcgccgt accccgcacc acgacccaat gttcggcgcg gtgatgatgc atttgcaatg
      721 acaaccgcgc acccggtttc accacgatcc gcttgacctg gaaacgctcg ccgttatcga
      781 tggaatcgta atgaccccac ggccgatgca ccttgcgatg atccgccgct tccttgcctt
      841 gctccgcctt gatgcgcccg acgatcgcct tcacgtcctg cacggactcc ttgtccgcga
      901 caagaatggc atccgccgtt tccacgatca ccaggttatg cgttcccacg cacgcgatca
      961 gccggccctc ggaatgcgca tacgtggatg acgacccctg gaacatcacg cggccacgcg
     1021 ccacgttttc ttcgccgtcc ttcggcagga tcttccagat cgcgtcccag gagcccacat
     1081 cggaccaacc tgcgttcagc ggcacgacag cacccgagca gacgctctga tcgccggcaa
     1141 gctgctccat gacggcatag tcgatagagt ccgacggcga agcggcgaac gcctgtttgt
     1201 cgagccggaa gaactcgccg tcgtgcgtgc cggcatcgca ggcggcgcgg caggcggcgt
     1261 agatggcagg ctggaagtgc tcgatggcct tgagccatac cgaagcgcgc acgatgaaaa
     1321 tccccgcgtt ccaccagtac tcgccggagc tgacgtactg gcgcgcgagt tcgagatgcg
     1381 gtttctccac gaacttctcg agttgccatg cgcccgagct aagcatctgc tggccgacct
     1441 tgatgtaccc gtagccggtt tctgcatgcg tcggcacgat acacatggtg acgatggcac
     1501 cgtcctgcgc gcactttgcg cccgtgccaa ttgccttgtg aaatgcttcg gtatccgtaa
     1561 caacatgatc tgcgggcatt accacgagga tagcgtcctc gccagccgcc atcgcgtgca
     1621 tggcacccac cgtcagcgca ggcgcagtat tgcgcgcaag cggctcaagg acgagacgcg
     1681 cgcgcctgcc actggctcgc aactggtcgg cggtcgtaaa gcgatgatct tcgccgcaca
     1741 cgatgattgc gtcgtcgata cgcgcagtgc cgtaggtcag gccgtccagc cgctgtgcgg
     1801 tggattgcag cagcgactgg tcaccgatca gaccaatcaa ctgcttgggg aagtgctcgc
     1861 gcgacatggg ccacaggcgt gtgcccgcgc caccggccag gatcaccggc tggatcctga
     1921 gcttgatttc agctgcggca ggcgtgagtg gagtggtgtt aagtgttata tctagagcgg
     1981 tcatgacgag ggagctcctt gagcttgatc gggtattaca atttttagca cgtactaaat
     2041 agctgataaa tcaaaaaaca gaaaaataat cactcgacat tctcaaatcg gtaagttggt
     2101 ctttaaaacg taacgagaat tggcgactga atttttttct tacttttccg gaattttttc
     2161 tcgaaaatta attgcctatg attcggcgga aagcctttat cagtaaggcg tttagcgatc
     2221 agtaacaatc tgaaaaaaat tcatcaatgc atcgcctgta gactgcagtc gtggcccagt
     2281 cgtggccttg tcgtggcttt caaatcgctt catgacaaaa ataaatatgc ggaaagacgt
     2341 gaattaaacc gcgcattatt ttgcggttgc agcatgaatt taattccagc ctcatacggg
     2401 tatgtaccaa ggcgccgggc gctctcgttt ctccgcattt gcttgctgtt tgctccaggc
     2461 gaatgcgtga cgctgaagcg ggacccgagc agaccgtgtc ttcccacccg aggtgtctta
     2521 catgttgagc gtgctttcga gaatgatcga cattgcgatg gtagcgctgg gtgcgctgct
     2581 ggccgcgtcg ttgcacgcgg gaaatgccgt ctggctcgac gacatgcaaa gcacgctgct
     2641 tgcattcaat tgcgtgctgg tgatcatgac gttcccgtcg ttcgggatat accagtcgtg
     2701 gcgcggcaag cccgtgtatg acctgctgtg gcgcgtgacg cttgcgtggt tgatggtgga
     2761 aggggccggc gtgctgctga ccttcagcgt gcatcgggcg gacttgctgt cgcgcttatg
     2821 gctgctgtat tggggtgtcg ccgcagcggc cttgttgatg ctctcgaagg ccgttgtgca
     2881 tgcgacgctc aagttgatcc gtcgtgaagg ttttaaccag aaggcggtcg ccattgtggg
     2941 ggcggcgcct tatggcgagt tcctgatcga gcagatgcgc agccgtcccg aggcgggttt
     3001 cagcccggtc tatgtgttcg acgaaacctt cccggagctc acgctggccg gagtgccggt
     3061 gagccgcgat ctgggcgacc tcacgcagct ggtgcgtggc cgtgcgattc gcgaattgtg
     3121 gctggcactg cccatttcgc aggagcggac catccacaag ctcgtcactg agttccgcga
     3181 cgactttgtg aatatccgct tcatcccgga cgtgcgcagc ctgtcgttct tcaaccacgc
     3241 ggtggttgat ctgctcggcg tgccggccat caacctggct gcgtcgccga tcacggacct
     3301 caaggtgctg ccgaagcgcg tgttcgaccg cctgttcgca gcaggcgtgc tgctgtgcct
     3361 cgcgccgttg ctgatcgtgc tggcggtggc cgtgaagatg tcctcaccag gaccggtgtt
     3421 tttcaagcag aagcgcaagg gcatagacgg ttacgagttc gagatctaca agtttcgttc
     3481 gatgagagtg cacaaggaaa cggccggtca cgtgacgcag gcgaagaagg gcgacaagcg
     3541 cgtgacacgc gtgggtgcgt tcctgcgtag aacgagcctg gacgagttgc cgcagttcat
     3601 caatgtgctg agaggcgaga tgtcggtggt cggtccgcgt ccccatgcgc tcgaacacga
     3661 cgacatctac aaggatctcg tgaagggcta catgtaccgg tatcgcatca aacccggcat
     3721 cactggctgg gcgcaagtga atggttttcg cggcgagacc gaccgtatcg aaaagatgat
     3781 ggggcgcgtg aaactcgacc tgtactacat gcagcactgg acctttggac tcgacatgaa
     3841 gattgttgca atgactttgt ggaagggttt tgccggttcg aatgcttact aacacccccg
     3901 ctaagaatgc tttgaataat ttgccaaccc tggagcgcgt gctatgaaac tcaccatcat
     3961 cggtagcggc tatgtaggcc tcgtgacggg cgcgtgtctg gccgatatcg gtaacgacgt
     4021 gctgtgcctc gatctcgacg aacgcaagat cgcgatcctg aacagcggcg gcgtgccgat
     4081 ccacgaaccg ggcctgcagg acgtgatcgc acgcaatcgt gcggctggac gcctcagctt
     4141 ttccaccgat gtccaggctg cggttgaaca cggcgaagtg ctgttcattg cggtgggcac
     4201 gccttccgac gaggacggat ccgcggactt gcagtacgta cttgctgcgg cgcgcgacat
     4261 cggccgttat atgaacaact tcaaggtgat cgtcgacaag tcgaccgtgc cggtgggtac
     4321 ggcgcgccgc gtgaaggcag cgatcgacca ggagctcgcc acgcgcggtg tgcagcacat
     4381 gttctcggtt gtatcgaacc cggagttcct gaaggaaggc gcggctatcg acgacttcac
     4441 gcggcccgac cggatcgtgc tgggttgcga cgacgacgtc cccggcgaac gcgcccgtga
     4501 gcgtatgaag cgcctgtatt caccgttcaa ccgcaatcac gaacgcacgc tttacatgga
     4561 tgtgcgctcg gcggaattca ccaagtacgc agctaacgcc atgcttgcca cgcgtatctc
     4621 gttcatgaac gaactcgcga atttcgcgga tcgcgtgggc gcggacattg aggcggtccg
     4681 tcgcggtatt ggctccgatc cgcgcattgg ctacgacttc ctgtatgcgg gttgcggtta
     4741 tggcggctcg tgttttccga aggacgtgcg ttcgctgatc cagacggcgg gcgagtacga
     4801 cgagcagatg gaaatcctga aggcggtgac ctcggtgaac gaggcgcaaa aacagacgct
     4861 tgccaacaag atcgtggccc gcctgggcga tgatctgcgc ggcaagaagt tcgcgctgtg
     4921 gggcttggcg ttcaagccga ataccgacga catgcgcgat gcccccagcc gtgtattgat
     4981 cgcggcactg ctggaacgcg gcgcgtcgat cagcgcctac gatccggtcg caacggacga
     5041 agcacgccgc gtgattgcgc tcgatctgag cgacacgccc gcgctgctcg ctcgcctgac
     5101 ctacgcgaac gatcataccg aagccctcga taacgccgac gcgctgatca tcgtgacgga
     5161 gtggaaggtg ttcaagagcc cggacttcga cggcatgaaa cgccgcctga agaccccgct
     5221 gattttcgat ggccgcaatc tctacgagcc ggaaaccatg aacgagatcg gcgtggagta
     5281 tcacgccatc gggcgcggcg tacggcaagc ggtgaaggcg cctgtagcag cctgaccggg
     5341 ttcttcaagc cagcacgatt agctggcctt taaaacgata tcgacacacc aggcgctgcg
     5401 agcgcggctt cggtcgaggg acccgatgcc gcgactgcgc cgctttaacg gatacaaccc
     5461 atgtttcgaa acgtcttgat tgtctgtcac gcgaacgtct gccgaagccc tgccgcggaa
     5521 atgctgttcc gcgcctacgc cggcaagtta gcggggaaag gcgcaagacg tgcgatcgaa
     5581 ttccgctccg ccggcctctt cgccgaagaa ggccgcaaca tcgatccaac gatgtaccgc
     5641 ttgctggcgg agcgcgatgt cgatccatcg ggacactccg cgcgccggct cgacgagtcc
     5701 atggcgcgcg cagccgagtt gattctcgtg cccgaacggc agcagattgc cgcgattgaa
     5761 cagatggcgc cgcacacacg cggcaaggtg catctgcttg gcaagtggga agactctgaa
     5821 gtggccgatc catacggcgg ccacgaagtt gcctatcgcg agagcttcgg gctaattgaa
     5881 cgtctggtcc agggatggct gaataaaata tggtgaaccg gtctctagct ttatctgttt
     5941 ccgcggtctt ttcgctgacg atttttttgt cggcttgcgg cgccttgcca gg
//
LOCUS       DATGBK010000249         2911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_49484, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000249 DATGBK010000000
VERSION     DATGBK010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49484"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1192)
                     /locus_tag="VKJ77_03705"
     CDS             complement(<1..1192)
                     /locus_tag="VKJ77_03705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HMC44410.1"
                     /translation="MTQTYVCPTIAEIRAGVASGKTSVENFVMQSFDAAKASQAELHA
                     FQYLPDAPPVNRAEAALPLAGVSVAVKDIIDTADMPTEFNSRAYTGRRPEHDASVVAR
                     LRAVGATILGKSVTTEFAFRHPGATVNPWNSAYTPGGSSSGSAAAVSAGIVPLALGTQ
                     TQGSVIRPAAYCGVVGFKPTYGTIARTGVLPLAWSLDHVGLFTTNVADAAYVLRLVAG
                     TDAGDPHASHVPATVAKAAGRRIGMLARQVGGAVDPAQQAALDALAERLARDGADIVI
                     VDLPAEIFDTPRHALTLMGVEAAITHGELVDRSPELVSAPMRELVKQGRTLPAIDYAR
                     TKVLQERMAHRFERWIRETMALDALLVAPASGEPPRGLDSTGDASFCAPWTFLGVPAV
                     TVPVG"
     gene            complement(1198..2157)
                     /locus_tag="VKJ77_03710"
     CDS             complement(1198..2157)
                     /locus_tag="VKJ77_03710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013343401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44411.1"
                     /translation="MLTALATALALSVASVSTTALAADKKVTISQAFQSMLYLPLYVA
                     MDGGFFTKEGLDVAKQTAGSPSAALSAVLSGSAEFSLHGPEWTAVAAEKGADVDVIAN
                     VVNGAAVWIAVAPDVKFAGIKDVKGEVVVSGQMPTTSTSLFFRALKENGMSPSDVKLM
                     QVPLGSEIGPLVAGQSKIAVMYEPGLDQAVAKGMKVVLSFPKLYGEYAFSSITAKRSI
                     DPDVAARFVKGLQDALVYMQTNPTETAAIARKEFPTLEAPVVDAAVKRMLADGVYPKN
                     VDITPKALTVAMDTQIALGNLKQQPKYDTFVARSYIQPALAAK"
     gene            complement(2224..>2911)
                     /locus_tag="VKJ77_03715"
     CDS             complement(2224..>2911)
                     /locus_tag="VKJ77_03715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44412.1"
                     /translation="NFLVGSPAKILDALVRDLHSGQLFVDTGYTLFEAILGFVFGTAV
                     GSVCGLALWYSPFVARLIEPFIVAINSVPKIAFAPIVILWFGTGLISKVALAISLTAI
                     VALIAAYEAAKDADPDLQALLVTLGANKNDVFTKVVVPSTLPYVISTFRINVGFGLVG
                     AVVGEFISSEHGLGHMIFTASSLYDLNTVWEGLFVLMAIGFVLYFLIDLIERRLLPWR
                     QASNANTLKV"
BASE COUNT          584 a          942 c          861 g          524 t
ORIGIN      
        1 aaccgaccgg caccgtaacg gccggcacgc ccagaaacgt ccacggggcg cagaacgacg
       61 catcgcctgt ggagtcgagc ccgcgcggcg gctcgccgct cgctggcgca accagcaacg
      121 cgtcgagcgc catcgtctcc ctgatccacc gctcgaaccg atgcgccatc cgctcctgca
      181 gaaccttggt ccttgcataa tcgatggcgg gcagcgtgcg cccttgcttg acgagttcgc
      241 gcattggcgc gctgacaagc tccggcgagc ggtcgacaag ttcgccatgc gtgatggctg
      301 cctccactcc catgagcgtc agcgcgtggc gcggtgtatc gaagatttct gccggaaggt
      361 cgactatgac gatgtcggcg ccatcgcgcg ccaggcgctc ggcaagcgca tcgagcgcgg
      421 cttgctgtgc agggtcgacc gcgccgccta cctgtctcgc cagcatgccg atacggcgcc
      481 ccgccgcctt tgcgaccgtg gccggaacat gcgacgcatg aggatcgccg gcatcagtgc
      541 cagcgacgag cctcagaaca taggcggcat ccgcaacgtt ggtcgtgaac aagccgacat
      601 ggtccagcga ccatgcgagc ggcaaaaccc cggtcctcgc gatggtgccg taggtcggct
      661 tgaagcctac gacgccgcaa tacgccgcag gacgaatcac agagccctgg gtctgggtgc
      721 cgagcgcgag cggaacaata cccgcgctga ccgctgccgc cgagccgctc gacgatccac
      781 ccggcgtgta cgcgctgttc cacgggttga cggtcgcccc cggatgacga aaagcaaact
      841 cggtcgtcac cgacttgccg agtatcgtcg cacccactgc gcgcaggcgt gctaccaccg
      901 acgcatcatg ctcgggacgc cgcccggtat aagcccgcga attaaactcg gtaggcatgt
      961 cagcggtatc aatgatgtcc ttcaccgcta ccgatacccc cgccagcggc aaggccgctt
     1021 cggcgcggtt gaccggcggc gcgtcgggca aatattggaa tgcatgcagc tccgcttgcg
     1081 aagccttggc tgcatcgaaa ctttgcatga cgaaattttc aacgctggtc ttacctgatg
     1141 caacaccggc ccggatctcg gcaatggtcg ggcaaacgta agtctgggtc atgtgcttca
     1201 cttggcggca agtgcgggtt ggatgtagct gcgcgcgacg aacgtgtcgt acttcggctg
     1261 ttgcttcagg ttaccgagcg cgatctgcgt gtccatcgcg accgtgagcg ccttcggcgt
     1321 gatgtcgaca ttcttggggt agacgccatc ggcgagcata cgcttgacgg cagcatcgac
     1381 caccggcgct tcgagcgtcg gaaattcctt gcgggcgatc gcggcggttt ctgtcggatt
     1441 cgtctgcatg tagacaagcg cgtcttgcag acctttcacg aagcgcgcag caacgtcagg
     1501 atcgatgctg cgcttcgccg taatcgacga gaacgcgtac tcgccataaa gcttgggaaa
     1561 gctcagcacg actttcatgc ccttggcgac agcttgatcg agacccggct cgtacatcac
     1621 tgcgatcttc gattgccccg ccaccagcgg cccaatttcg gagccgagcg gaacctgcat
     1681 cagcttgacg tcgctcggcg acatgccatt ctccttcagc gccctgaaga agagcgacgt
     1741 gctggtagtc ggcatctgcc ccgacacgac cacctcgccc ttgacgtcct tgataccggc
     1801 aaacttcacg tcgggagcca ccgcgatcca cacggccgcg ccgttcacta cgttcgcgat
     1861 cacatcgacg tcggcgccct tctcggccgc caccgccgtc cattcgggac catgcagcga
     1921 aaattccgcg ctacccgaca acactgccga taacgccgcg ctcggactgc ccgccgtttg
     1981 cttggccacg tcgagccctt ccttcgtgaa gaaccccccg tccatagcaa catagagcgg
     2041 caaatacagc atcgactgaa acgcttgcga aatggtgact ttcttgtcgg cagcgagcgc
     2101 cgtggtcgag accgacgcta cggaaagcgc gagcgccgtc gccaacgcgg tcagcatttt
     2161 tcttgcggtg aatcttgagg ttggtgccat cgttatatcc cgatcaagtg attgactact
     2221 cgttcaaact ttcagcgtgt tcgcattcga tgcctggcgc cacggcagca gccggcgctc
     2281 gatgaggtcg atcaggaaat acaggacgaa accgatcgcc atcagcacaa agagcccttc
     2341 ccataccgtg ttgaggtcgt acaggctgga ggccgtgaag atcatgtgcc cgagtccgtg
     2401 ttcggacgag atgaactcgc cgaccaccgc tccaaccaga ccgaagccga cgttgatgcg
     2461 aaacgtcgag atcacatacg gcagcgtgga cggcacgacc actttcgtga acacatcatt
     2521 cttgttcgcg ccgagcgtga ccagcagcgc ctggaggtcg ggatcggcat ctttcgccgc
     2581 ttcgtatgcc gcgatcagcg cgacgatggc agtcagtgag atcgccagcg cgactttcga
     2641 tatcagcccg gtgccgaacc acaggatcac gatcggcgcg aacgcgattt tcggcacgct
     2701 gttgatcgcg acgatgaacg gctcgatcaa ccgcgcgacg aacggcgaat accagagcgc
     2761 gagaccgcat actgagccca ccgccgtgcc gaacacaaaa ccaagaatgg cttcgaacag
     2821 ggtgtagccg gtatcgacga atagctggcc ggaatggaga tcgcgcacga gcgcatcgag
     2881 gatcttcgcc ggtgagccga ccaggaaatt c
//
LOCUS       DATGBK010000250         2108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_303622, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000250 DATGBK010000000
VERSION     DATGBK010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303622"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            68..1057
                     /gene="tagF"
                     /locus_tag="VKJ77_03720"
     CDS             68..1057
                     /gene="tagF"
                     /locus_tag="VKJ77_03720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system-associated protein
                     TagF"
                     /protein_id="HMC44413.1"
                     /translation="MTQTVQAQVAYFGKIPSRGDFVKSANNPQLLNTLDRYVAQGMEL
                     LAEDPRWKIVYDEAKPVHFAFLGSQSKLAIAGHMVTSHDQSQRRFPFLAAAALEVDRP
                     LSFLPRSPLAFARLWSRIATQMQPLLGDIEPPGALQALAETQIAVDIDSQRNPHDGTF
                     ADFVEHQTLAGLEQMLLANGHPVRLRGAMLALGSLLKPVMASGSSHLERGLTLPLPND
                     PFYRSLVAALWLELIAPFVSQADFELAIFIGTIASRERLVVGFNGASAKTLHSIVDPQ
                     VYASHNIDIDDPEWIDAHAQNDHGISKLVSYLDQPQLSLRVAIDTFREVFIGA"
     gene            1062..1946
                     /locus_tag="VKJ77_03725"
     CDS             1062..1946
                     /locus_tag="VKJ77_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HMC44414.1"
                     /translation="MRSIVALCFLVGAVSAHAQTVNPVAGDPVKTTALPAVAAPAPPA
                     LQNPNATGAIVSAPATANTVPGQVVAGGTVPDEATKAAVLARLRDTYGASNVVDQIEI
                     GDVATPPNWGANVQKLINPQLKQISKGQLRIDGTAIDVKGEVSNEAQRQQIASDMANA
                     LNPTYTIKNGLRVTASEQGLLDRTLANRTIEFETGSATLTPQGRAILDQMAAVLVKMT
                     TRTVEVIGHTDNAGNRSSNVALSQARADAVKGYLVAKGISPQTLNTTGVGPDQPIASN
                     DTNDGRARNRRIEFRAGQ"
BASE COUNT          420 a          621 c          665 g          402 t
ORIGIN      
        1 cggtgcccgt ggctccggtc ggatccagac aaactgccgc cgcgacatcg gctaatggag
       61 acacgcaatg acgcagacag tccaggcgca ggtcgcgtac ttcggcaaga ttccatcgcg
      121 cggcgacttc gtgaagagcg cgaacaatcc gcaattgctg aacacgctcg accgatatgt
      181 ggcgcagggc atggaactgc tcgcggaaga tccgcgctgg aagatcgtct atgacgaagc
      241 caagccggtt cacttcgcct ttctcggctc gcagagcaag ctcgccattg ccggccacat
      301 ggtgacgagc cacgaccagt cgcagcgtcg ctttccgttc ctcgcggcgg ccgcgctcga
      361 ggtcgatcgg ccgttgagct tcctgccgcg tagtcccctc gccttcgcgc gactgtggtc
      421 gcgtatcgcg acgcagatgc agccgctgct cggcgacatc gagccgcccg gtgccttgca
      481 ggcgctggcg gaaacacaga ttgccgtcga tatagattcg cagcgcaatc cgcacgacgg
      541 caccttcgcc gattttgtcg agcatcaaac gctcgcgggt cttgagcaga tgctgcttgc
      601 gaacggccat ccggtgcgtc tgcgcggcgc gatgctcgcg ctcgggtcgc tgctcaagcc
      661 ggtgatggca agcggctcgt cgcatctcga acgtggcctg acgctgccgt tgccgaatga
      721 tccgttctat cggagcctgg tggcggcgct ctggctcgaa ctgatcgcac cgtttgtctc
      781 gcaggctgac ttcgagctgg cgatcttcat tggcacgatt gcttcgcgtg agcggctggt
      841 ggtcggcttc aacggcgcct cggcgaaaac gctgcacagt attgtcgatc cacaggtata
      901 tgcgtcccat aacatcgata tcgacgatcc cgagtggatc gacgcacatg cacagaacga
      961 tcatggcatc agcaagctcg tcagttatct cgatcaaccg caactctcgc tgcgtgtcgc
     1021 tatcgacacg ttccgcgaag ttttcatcgg agcttgagcg catgcgttcg atcgttgccc
     1081 tgtgcttcct ggtcggtgcc gtcagtgcgc atgcgcagac cgtcaatccg gtcgcgggcg
     1141 atccggtgaa gaccacggcg ttacccgcgg tcgcggcacc ggctccgcca gctcttcaga
     1201 atcccaatgc gaccggcgcg atagtgtcgg cgcctgcgac ggccaacacg gtgccgggac
     1261 aggttgtggc cggtggcact gtgccggacg aagcgacgaa ggcagcggtg cttgcgcgtt
     1321 tgcgcgatac ctatggtgcg agcaatgtag ttgatcagat cgagatcggc gatgttgcga
     1381 cgccgccgaa ctggggcgcc aatgtgcaga agctgatcaa cccgcagttg aagcagatca
     1441 gcaaggggca gttgaggatc gacggcacgg cgatcgatgt gaagggcgaa gtgagtaatg
     1501 aggcgcagcg ccagcagatc gcaagcgaca tggccaacgc attgaaccct acgtacacga
     1561 tcaagaatgg ccttcgtgtc acggcatcgg aacagggatt gctcgaccgg acgctggcta
     1621 atcgcacgat tgagttcgaa actggcagtg cgactttgac gccgcagggg cgcgctattc
     1681 tcgatcagat ggcagctgta ctcgtgaaga tgacaacgcg cacggtcgag gtgattgggc
     1741 ataccgacaa tgcgggtaac cgtagttcga acgtcgcgct gagccaggcg cgcgcagatg
     1801 cggtgaaggg atatctggtc gcgaagggaa ttagtccgca gacgctgaat acgacggggg
     1861 taggaccgga tcagccgatt gcatcgaacg atacgaatga cggtcgggcg cgtaacagac
     1921 ggattgagtt tcgggcggga cagtagagca ggacgcgagg gacgttcgac taatacgaat
     1981 gtcccctctt actacccggc ctgaaccttc acccctagca actcccgaat atgcgcgagc
     2041 gacgcatcgt ccttgactac agtggtcagc cattcgtgca atggcatatc ggcccactcg
     2101 gcggcttt
//
LOCUS       DATGBK010000251         5160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_188224, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000251 DATGBK010000000
VERSION     DATGBK010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5160
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188224"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..754
                     /locus_tag="VKJ77_03730"
     CDS             173..754
                     /locus_tag="VKJ77_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HMC44415.1"
                     /translation="MGTNRIEAFSDGVIAIIITIMVLELKVPHGADLASLSALGPVFC
                     AYVLSFVYVGIYWNNHHHLMHAAQRVNGSVLWANLHVLFWLSLLPFTTNWMGENHLAS
                     LPTAIYGFDLFMTAVAWYILTRALISLHGANSMLERAIGADRKGKISVVLYLVAIVAS
                     FWEPWVAASLYVIVAVVWLVPDRRVEKALLTEE"
     gene            829..1293
                     /locus_tag="VKJ77_03735"
     CDS             829..1293
                     /locus_tag="VKJ77_03735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HMC44416.1"
                     /translation="MSPVIRIGIISDTHNLVRPEALDALRGCEHIIHAGDICNPAVLD
                     TLNELAPVTAVRGNNDSGARIDDLPEALTFHIGDTAIHLVHDIADVPNRLDGIDLVVT
                     GHSHKPLVERRGATLFVNPGSAGPRRFKLPVTLGIMLIDKGEVKVEIVQLIE"
     gene            complement(1404..2870)
                     /gene="proP"
                     /locus_tag="VKJ77_03740"
     CDS             complement(1404..2870)
                     /gene="proP"
                     /locus_tag="VKJ77_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline transporter ProP"
                     /protein_id="HMC44417.1"
                     /translation="MATPNDGLWRQPQPEKALSLDDITIVDKSLLKRAVGAMAIGNAM
                     EWFDFGVYSYIAVTLGKVFFPSANPGAQLIATFGTFAAAFLVRPLGGMVFGPLGDRIG
                     RKRVLAMTMIMMAIGTFCIGLIPTYGSIGIFAPILLLVARLVQGFSTGGEYGGAATFI
                     AEFATDKKRGFMGSFLEFGTLVGYVLGAGCVAVLTATMSEQSLLSWGWRIPFLIAGPM
                     GLIGLYIRLKLEETPAFQREADKRESEAHSTPKEQFRDMLVKQWRPMLQCVGLVLIFN
                     VTDYMALSYLPSYLSATLKFNETHGLFIVLLVMVLMMPMTLGAGHLSDKVGRKPVMLF
                     GCVGLLLFSIPALTLIRMGTMLPIFSGMLILGVLLSCFTGAMPSALPALFPTKIRYGA
                     LAIGFNVSVSLFGGTTPLVTAWLVSSTGNLMMPAYYLMGASVIGIVSVLALHETARQP
                     LKGSPPCVGSRAEAYAVLRGVRQAAEMDDRMPEATAHA"
     gene            complement(3508..3783)
                     /locus_tag="VKJ77_03745"
     CDS             complement(3508..3783)
                     /locus_tag="VKJ77_03745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006401987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HMC44418.1"
                     /translation="MARTIQCAKLGKEAEGLDFPPLPGELGKRIYETISKEAWQGWLK
                     QQTMLINENRLNMADPRARQYLLKQTEKYFFGEGADTAQGYVPPTPS"
     gene            complement(3875..>5160)
                     /gene="argA"
                     /locus_tag="VKJ77_03750"
     CDS             complement(3875..>5160)
                     /gene="argA"
                     /locus_tag="VKJ77_03750"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004042 - acetyl-CoA:L-glutamate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HMC44419.1"
                     /translation="WMRSVAPYIHAFRNKTFVVAFGGELVQEGRLNALVQDVGLLHAM
                     GIHVVLVHGSRPQVEEQLNLHGVESEFSHGLRITDARALESAKEAAGEVRLDIEAAIS
                     QGLPNTPMAHAHISVVSGNFVTARPVGILDGVDFQHTGVVRKIDGDSIRHSLTSSKLV
                     LLSPLGFSPTGEAFNLSMEDVASAAAIALRADKIIFLTETPGLVDENGELVREMSLDD
                     AYRLHESGELQGDAAFYLKHTIRACRGGVARAHIIPYALDGSILLELFLHDGVGTMIS
                     YENLESLREATPDDVGGILTLIEPLEMDGTLVRRGRHQIERDIDHFSVIEHDGVLFGC
                     VALYPYTQERIGEMACLTVSPEAQGSGDGERLLKRVEQRARARGLTHIFVLTTRTEHW
                     FLKRGFVKVTVDDLPEDRRRLYNWQRKSLVLMKQL"
BASE COUNT         1047 a         1551 c         1542 g         1020 t
ORIGIN      
        1 atgattcgat gcattgcctt tcatcgataa accacgacgt cctttctctc gtacacgcta
       61 aatcgacaac gccaggctgc tcgcgcataa tttgctgcgc gcggccaggg cgaggccgta
      121 tcaggggcat ccagccccgg cgctaaaaca agaaagcacg agaaaggacg aaatgggcac
      181 gaatcggatc gaggcattca gcgacggcgt gatcgccatc atcatcacga tcatggtgct
      241 ggaactcaag gtgccgcacg gcgcggatct ggcgtcactc agcgcactcg gcccggtgtt
      301 ttgcgcctac gtgctgagct tcgtgtatgt cggcatctac tggaacaacc accatcacct
      361 gatgcacgca gcccagcgtg tcaacggcag cgtgctgtgg gcgaacctcc acgtactgtt
      421 ctggctgtca ctgctcccgt tcaccaccaa ctggatgggc gagaaccacc tggcgtcatt
      481 gcccactgcg atctacggct tcgacctctt catgacagcg gtcgcgtggt acatcctcac
      541 gcgcgcgttg atcagcctgc acggcgccaa ctcaatgctg gagcgcgcga ttggcgcgga
      601 tcgcaagggg aagatttcag tggtgctgta tctcgtcgcc atcgtcgcct cgttttggga
      661 gccgtgggtt gccgcgtcct tatacgtgat cgtggctgtc gtatggctcg tccccgaccg
      721 ccgcgtggag aaagccctgc tgacggaaga gtaatgacct gcgccgcggt gatttcatcg
      781 acatgaacag tgctacgctc gggccataaa gtcctgcgag cgaagcccat gtcacctgtc
      841 atccgcatcg gcatcatctc cgatacccac aacctcgtgc gccctgaggc gctcgatgcg
      901 ttgcgcggct gcgagcacat cattcacgcc ggcgatatct gcaatcccgc tgtcctcgat
      961 acgctcaacg aactcgcgcc cgtcacggcg gtccgcggca ataacgactc gggtgcgcgg
     1021 atcgacgacc tgccggaagc gctgacgttt catatcggcg atacggcgat tcatctcgtc
     1081 cacgacatcg ctgacgttcc gaaccgactc gatggtatcg acttggtcgt caccggccat
     1141 tcgcacaagc ctttggtcga acggcgcggt gcaacgctgt tcgtcaatcc gggaagcgcc
     1201 gggccgcgcc gattcaagtt gccggtgacg cttggcatca tgctgatcga caagggcgag
     1261 gtgaaggtcg agatcgtgca gctgatcgag tgaatggcgg cccagcaact ggctccgctt
     1321 gagcgaccaa gcaaaaaggc catccaacgt tagctggatg gcctctttgt ttaacaaccg
     1381 cccgccgatc agcttgatga cggttatgcg tgcgcggttg cttccggcat ccggtcatcc
     1441 atttcggcgg cctgccgcac gccgcgcaac acggcatacg cttccgcgcg cgaacccacg
     1501 cacggcgggg aacccttcag cggttgcctg gccgtctcat ggagcgccag caccgagaca
     1561 atcccgatca ccgatgcccc catcaggtag tacgccggca tcatcaggtt tcccgtcgac
     1621 gaaaccagcc aggcggtgac cagcggtgtc gtgccgccga acagcgaaac cgatacgtta
     1681 aagccgatcg caagcgcgcc gtagcggatc ttggtgggga agagcgcggg caatgccgac
     1741 ggcatggcgc cggtgaagca tgacagcaac acgccgagga tcagcatgcc gctgaaaatt
     1801 ggcagcatgg tgcccatgcg gatgagcgtc agcgcgggta ttgaaaacag cagcaacccg
     1861 acgcatccga atagcatcac cggcttgcgc ccgaccttgt ccgacagatg gccggcgccc
     1921 agcgtcatcg gcatcatgag taccatcaca agcagcacaa tgaagagccc atgcgtttcg
     1981 ttgaatttca acgtggcgga cagatagctc ggcagataag acagcgccat gtaatcggtt
     2041 acgttgaaaa tcagcaccag cccgacgcat tgcagcattg gcctccactg cttgaccaac
     2101 atatcgcgga attgctcttt cggcgtgctg tgcgcttcgc tttcgcgctt gtcggcttca
     2161 cgctggaaag caggcgtttc ttcaagcttc agccggatat acaggccgat cagccccatc
     2221 ggtcctgcga tcaggaatgg aatgcgccat ccccaggaga gcagcgattg ctcggacatc
     2281 gtcgcggtca gcacggcaac acaacctgcg cccaagacat agcccacgag cgtaccgaac
     2341 tctagaaaac tgcccatgaa accgcgcttc ttgtccgtcg cgaattccgc gatgaacgtc
     2401 gccgcgccgc catactcgcc gcccgttgaa aagccctgca ccaaacgcgc gacgagcagc
     2461 aggatcggcg caaaaatgcc gatgcttcca tacgttggaa tcaagccaat acaaaacgtg
     2521 ccgatcgcca tcatgatcat ggtcatggcg agcacgcgct tgcggccgat gcggtctccc
     2581 agcggcccga acaccatgcc gccaagcggg cgcacgagga acgccgcggc gaacgtcccg
     2641 aacgtggcga tcagttgtgc ccccggatta gccgacggga agaacacttt gccgagcgtc
     2701 accgcgatat agctgtagac gccgaaatcg aaccattcca ttgcattgcc gatcgccatc
     2761 gcgccgactg cgcgcttgag cagcgattta tcgacgatgg tgatgtcgtc gagcgacagg
     2821 gctttttcgg gttggggttg tcgccagagg ccgtcgttcg gtgttgccat gaagagaagc
     2881 tccaggtttg ttgccaagcc gtccgtggga cggttcggcg tgcgcataag cgcacgttgc
     2941 cgggaaagtg cagtttcgcg acgaggcgag ttccggtgct cgcaccgaaa gcggttgccc
     3001 gcacgctgaa cgcatgagag atgcgctgac ggtgctgaca gtgcatcagg caaatgccga
     3061 agcctcgtgg cgatgtcgcg aaatggcact tcgtgggtag tacacgggtg cacgggtatt
     3121 actcgggtgc tacggggata gatggctgga cacagctaaa ttgaacaacg cgtgcgctca
     3181 gtgcgctgct gtttggttgc ttgctgtgtc acggattgag aaggcttgag agcaacttgt
     3241 ccacgggcaa atccagaccc gcggaagcct ccacaaccac tcgccgatat ctcgaattag
     3301 cgcttgaatg aatgcttcat gcgcgtcatt gctaagaaat tgactttgaa ttgcagttgg
     3361 aaagaaggag atgatagcac gatgcaagac gatccgcaaa ccggggcgtg gagagggaag
     3421 agtgcagggg cgctcgtgcc cgttcgcaca aagaaaaagc cggcctcgaa agaccggctt
     3481 gtcattgcca gaaaacaact cgcctgatca gcttggcgtc ggcggcacgt agccttgagc
     3541 ggtatcggcg ccttcaccga agaagtactt ttccgtctgc ttcagcaagt actggcgtgc
     3601 gcgcggatca gccatgttca ggcggttttc gttgatcagc atggtttgct gcttgagcca
     3661 gccttgccat gcttccttcg aaatcgtttc atagatccgc ttgccgagtt ctcccggcag
     3721 gggcggaaag tcgagtcctt cggcttcctt gccgagtttc gcgcattgaa tcgttcgggc
     3781 catctgtatt tctcctgtag cggggtaact ggacgcctcg cgtcgggcgg cgcttgggtg
     3841 cgcctgcaac cggacgatca cgcctcgaaa taggttaaag ctgcttcatc agcacaagcg
     3901 atttacgttg ccagttgtag agccggcggc ggtcttcggg caggtcgtcg acagttacct
     3961 tgacgaatcc gcgtttgaga aaccagtgct cggtgcgcgt ggtcagcacg aagatatgcg
     4021 tgaggccgcg agcgcgcgca cgctgttcga cgcgcttgag caagcgttcg ccgtcgcctg
     4081 aaccttgcgc ttcgggcgag accgtcaggc aggccatttc gccgatgcgt tcctgcgtgt
     4141 acggataaag cgccacgcag ccgaacagca cgccatcgtg ctcgatcacc gagaaatggt
     4201 cgatatcgcg ttcgatctgg tgccggccgc gccgcacgag cgtgccgtcc atttccagcg
     4261 gttcgatcag cgtcaggatc ccgccgacgt catccggtgt agcttcgcgc aggctttcga
     4321 gattctcgta cgagatcatc gtgccgacgc cgtcgtgcag gaacaattcg agcaggatgc
     4381 tgccgtcaag cgcgtaggga atgatgtgcg cccgcgccac gccgccacgg caggcgcgaa
     4441 tggtgtgctt caggtagaac gcggcgtcgc cctgcagttc gccgctttcg tgcagcctgt
     4501 acgcgtcgtc caacgacatt tcgcgcacca gttcgccgtt ttcatcgacg agaccggggg
     4561 tttcggtgag gaaaatgatc ttgtcggcgc gcagtgcaat tgccgctgcc gacgccacat
     4621 cttccatcga taaattgaat gcttcgcccg tcggcgagaa accgagcggc gagagcagta
     4681 cgagtttgct gctggtcagc gagtggcgaa tggaatcgcc gtcgatcttg cgcaccacgc
     4741 cggtgtgctg gaaatcgacg ccgtcgagaa tgccgaccgg ccgcgctgtc acaaaattgc
     4801 ccgataccac gctgatgtgc gcatgcgcca tcggcgtgtt cggcaagcct tggctgatcg
     4861 ccgcttcgat gtcgaggcgc acttcgccag cggcttcttt cgcggattcg agcgcgcggg
     4921 cgtccgtgat gcgtaagccg tgtgaaaact ccgattccac gccgtgcagg ttcaactgtt
     4981 cttccacctg gggtcgcgaa ccgtgcacga gcacgacgtg aatgcccatg gcgtgtaaca
     5041 gcccgacgtc ctgaacgagt gcgttcagac gtccttcctg caccagttcg ccgccgaacg
     5101 cgaccacgaa ggtcttgttt cggaacgcgt ggatataggg tgcgacggag cgcatccatt
//
LOCUS       DATGBK010000252         2127 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_326915, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000252 DATGBK010000000
VERSION     DATGBK010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326915"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(181..>2127)
                     /locus_tag="VKJ77_03755"
     CDS             complement(181..>2127)
                     /locus_tag="VKJ77_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HMC44420.1"
                     /translation="TPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKENALLSKFAG
                     GLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWH
                     LDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVHENGDWTLFSPATCPDLHDLF
                     GAPFEKAYVAYEEKAARGEIKLFKKVPAAQLWRKMLGMLFETGHPWITFKDPCNIRSP
                     QQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLVAHMAKQADGTLALDHDKLKRTV
                     SVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASKEAVAFA
                     DTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRGVLPQDSLKLLAEARGGYVEVDD
                     SSSMDWTELRSRIANYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGE
                     FTVVNDYLVRDLKERGLWDEVMVSDLKYFDGTLSRIDRVPADLRAIYATAFELDATWV
                     VEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWLRGLKTTYYLRTMAATHVEKS
                     TVAHGQLNSVPSGNSGSGEGGASGANGNGFGSQGSHGSSTGGFNAAAVAAPAMAAAAE
                     AEADGPVCMMRPGDAGFDECEACQ"
BASE COUNT          406 a          697 c          602 g          422 t
ORIGIN      
        1 caactcaaac ttcaaccgct gcagcgaccg gaactcggcg agcacaaaca agaaaaggcc
       61 ggttccgaat tcgcccgccc cttccacgcg gaaagaacca acgtttcgta ccggccttca
      121 atcccactga ctatctgacc agcgagaggc cgattgcaac ggccccgcgc cttctaccgc
      181 ttactggcaa gcctcgcact cgtcgaagcc ggcatcgccc ggacgcatca tgcaaaccgg
      241 accatcggcc tctgcttcag ccgcagcggc cattgccggt gccgcgacgg cagcggcgtt
      301 gaagccaccc gtcgacgacc cgtgcgaacc ctgtgagccg aaaccgttgc cgttcgcgcc
      361 tgacgctcca ccctcgccgc tccccgagtt gcccgacggc accgagttca gttgaccgtg
      421 agcgaccgtc gacttctcga cgtgcgtagc ggccatcgtg cggaggtagt acgtggtctt
      481 cagaccgcgc agccacgcca gcttgtacac ctcgtcaagc ttcttgcccg acgcgccacc
      541 catatagatg ttcagcgatt gcgcctgatc gatccacttc tgacggcgcg atgcagcttc
      601 caccacccag gtcgcgtcca gttcgaacgc agttgcgtag attgcccgca agtcggccgg
      661 aacccggtcg atacgcgaca acgtgccatc gaagtacttc aggtccgaga ccatcacttc
      721 gtcccacaga ccgcgttcct tcaggtcacg caccaggtag tcgttcacga ccgtgaattc
      781 acccgacaga ttcgatttca cgtacaaatt ctggaacgtc ggctcgatac atgccgacac
      841 gccgatgatg ttcgaaatgg tcgcggtcgg agcgatcgcc acgcagttcg agttgcgcat
      901 gccgtagttg gcgatccgcg aacgcagttc ggtccagtcc atcgacgagc tgtcgtccac
      961 ttccacgtat ccaccgcgcg cttcggcgag cagcttcagc gaatcctgcg gaagaacgcc
     1021 gcggtcccac agcgagccgc gatagctcga gtaacggccg cgctcttgcg ccagttccgt
     1081 cgatgcgtag taagcgtagt agcagaccgc ttccatcgag gtatcggcga aagcaacggc
     1141 ttccttcgat gcatacggcg tacgcagcag gtgcaggcag tcctggaagc ccatgatgcc
     1201 cataccgacc ggacgatgct tcaggttcga attgcgcgcc ttggccaccg cgtagtaatt
     1261 gatgtcgatc acgttgtcga gcatgcgcat ggcaacgctg acggtgcgct tgagcttgtc
     1321 gtgatcgagc gcgagcgtgc cgtcggcctg cttcgccatg tgcgcaacca ggttcaccga
     1381 gccgaggtta cacacggcga tttcggtgtc gctggtgttc agcgtgattt ccgtgcacag
     1441 gttcgacgag tggacgacgc ccacgtgctg ctgcggcgaa cggatgttgc acggatcctt
     1501 gaacgtgatc cacgggtgac ccgtttcgaa cagcatgccc agcatcttgc gccacagttg
     1561 cgcggccggg accttcttga acagcttgat ctcgccgcgt gcggccttct cttcatacgc
     1621 tacgtaggct ttttcgaacg gtgcgccgaa caggtcgtgc aggtccgggc aggttgccgg
     1681 cgagaacagc gtccagtcac cgttttcgtg aacgcgcttc atgaacagat cgggaatcca
     1741 gttcgccgtg ttcatgtcgt gcgtgcggcg acggtcgtca ccggtgtttt tacgcagttc
     1801 caggaattct tcgatatcca gatgccacgt ttccaggtac gcgcacaccg cgcccttgcg
     1861 cttgccgccc tggttcaccg caacagccgt gtcgttcacg actttcagga acggcaccac
     1921 gccttgcgac ttgccgttcg tgcccttgat gtgcgaaccg agcgcacgca cgcgcgtcca
     1981 gtcgttaccc aaaccgcccg cgaacttcga cagcagcgcg ttttccttca gcgcttcata
     2041 gataccgtcg aggtcgtcgg caaccgtcgt cagatagcac gacgacaatt gcgaacggcg
     2101 cgtaccggag ttgaacagcg tgggggt
//
LOCUS       DATGBK010000253         3735 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_280741, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000253 DATGBK010000000
VERSION     DATGBK010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3735
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280741"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..259
                     /locus_tag="VKJ77_03760"
     CDS             <1..259
                     /locus_tag="VKJ77_03760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44421.1"
                     /translation="ADMQRLLVKVVQDTHAGTVLVTHDIDEALLVSDRIVLLGARGAL
                     IAQWHVSVPAPRAAEVQALGALRIEVLQALQDAMSRERTIA"
     gene            345..1535
                     /locus_tag="VKJ77_03765"
     CDS             345..1535
                     /locus_tag="VKJ77_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44422.1"
                     /translation="MCQLPMSRREWLKLASMFTVTGAAPLLGSLSARAASEPDAPVRI
                     GYLPITDATPLLVAHNNGYFEAAGVSAEKPTLLRSWAQLVEAFLSGQVNVVHLLSPMT
                     VWARYGSQAPAKVVAWNHVNGSGITVAPSIDKLGDLGGKTVAVPFWYSIHNVVLQDML
                     RAQGLVPVLKKTSPPKPNEVNLIVMSPSDMPPALAAGQIAGFIVAEPFNAAAEGLHIG
                     KVLRFTGDVWKNHACCVVFMHEQDLTGRAAWSQKVVDAIVKAQVWTREHPAEAAQLLS
                     KEGKNHYTPHTSQVLTRVLAPPPGDEGRYLADRAIVHADWHEKRIDFQPYPYPSYTEE
                     LVRRMKTTQVEGNAQFLAKLDPAFVARDLVDDRFVRNSIAAVGGMKAFGLPDGFTRSE
                     SFVV"
     gene            1603..2364
                     /locus_tag="VKJ77_03770"
     CDS             1603..2364
                     /locus_tag="VKJ77_03770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44423.1"
                     /translation="MGRTWPGLAGIVAVVALWWLVLTLVAGPDSLAAQFLPTRALAAL
                     PSLVTDDRLFEHIVTSLRRIAVGLLWALMIGVPLGFLIGRLRWLDAALSPTLQFLRMI
                     SPLSWMPIAVMSLGVGDRAVYFLLTFAALWPLVMSTAAGVAQIDRRWLQLGESLAATR
                     FEMLWHVYVPGIAVHVLTGMRLSIGILWIVLVPAEMLGVSAGLGYLVLDTRDRLAYSE
                     LTAVILVIGALGFLLDYAARLAYRRFGAGRLNGEE"
     gene            2673..>3735
                     /locus_tag="VKJ77_03775"
     CDS             2673..>3735
                     /locus_tag="VKJ77_03775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007737172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HMC44424.1"
                     /translation="MTSAPFALFFIVMIGLIVWLADPAPPRTITISAGPQDSALLHTA
                     DEYKKILARNGVTLKVLESDGSVQNLQRLMDPKSHVDLALVQGGVSDAAARSSLMSLG
                     SVFYVPLVVFYRGKGLTQLSDLEGKRIAIGREGSGTRRLSLSLLEANGIAPGGVTQLI
                     PLDGMDAAKQLVAGDVDAAMLNGDSTTRGLMLRLLGIPGISFMDFAEASAYTRLFPYL
                     DEIDLPPGVLDLRRKIPPQTLHLIGPTVEILARQNLHPAISDLVIEAAQEVHGMPGLL
                     QNAGQFPSPIAREYPISEEATRYYKSGKSFLYRVLPFWLASVADRILVLLLPVAVLLI
                     PALRLIPALYAWRVRSRIYR"
BASE COUNT          621 a         1186 c         1166 g          762 t
ORIGIN      
        1 cgccgacatg cagcgcctgc tcgtcaaggt cgtgcaggac acgcacgcgg gcacggtcct
       61 cgtgactcat gacatagacg aggcgttgct tgtatccgac cggatcgtgc tgctgggcgc
      121 ccgtggtgca ttgatcgcgc aatggcacgt gagcgtgccc gcgccgcgtg ccgccgaagt
      181 gcaggcgctg ggcgcgttgc gcatcgaggt tcttcaggcg ctgcaggatg cgatgtcgcg
      241 cgagaggacg atcgcttaat gcgccttaaa gcgccttaac gcgctttgta aatacggccg
      301 tcacccgctt cacttttcat caatgcagca aacgcaggat cactatgtgc cagcttccaa
      361 tgtcccgccg cgagtggctg aaactcgcct cgatgttcac cgtcacgggt gctgcgccct
      421 tgctcggctc gctgagcgcg cgcgcggcga gcgagcccga tgcgccggtg aggatcggtt
      481 acctgcccat caccgacgcc accccgctgc tcgtcgcgca caacaacggc tactttgagg
      541 cagccggggt ctccgccgag aaacccacgc tcctgcgtag ctgggcgcaa ctggtcgaag
      601 cgttcctctc gggtcaggtc aacgtcgtcc accttctttc tccgatgacc gtctgggcac
      661 gctacggcag tcaggcaccg gcaaaggtcg ttgcgtggaa tcacgtgaac gggtccggta
      721 ttacggtggc gcccagtatc gacaagctcg gcgatctcgg tggcaagacc gtggcggtgc
      781 cgttctggta ctccatccac aacgtcgtgc tgcaggacat gttgcgcgcg caagggctcg
      841 tgccggtgct caagaaaacc tcaccaccga agccgaacga agtgaacctg atcgtgatgt
      901 cgccgtccga tatgccgccc gcgctggcgg ccggacagat cgccggcttt atcgtcgccg
      961 agccgtttaa cgcggccgcc gaggggctcc atattggcaa ggtgttgcgc ttcaccggcg
     1021 acgtctggaa gaaccatgcg tgctgcgtgg tgttcatgca cgagcaggac ctgaccgggc
     1081 gtgcggcgtg gtcgcaaaag gtcgtggacg ccattgtcaa ggcgcaagtc tggacccgtg
     1141 agcatccggc ggaagcggcc cagcttttgt cgaaggaagg caagaaccac tacacaccgc
     1201 atacgtccca agtgctgaca cgcgtgctcg cgccgccacc cggcgacgag ggccgttatc
     1261 tcgccgatcg cgctatcgtc catgcggact ggcatgagaa acgcatcgac ttccagccgt
     1321 atccgtaccc gagctatacc gaagaactcg tgcgccgcat gaagaccacg caggtggaag
     1381 gcaacgcgca gtttctcgcc aaactcgacc cggccttcgt ggcgcgcgat ctcgtcgacg
     1441 accggttcgt ccggaacagt attgcggcag tcggcggcat gaaggctttc ggcctccccg
     1501 acggcttcac gcgttcggag agcttcgttg tctagcctgt cctcttcgcg cgaacaggcc
     1561 gccactgacc ggacaaacag cccgccacgc ggtcggtcgt ggatcgggcg cacttggccg
     1621 gggctcgccg gtattgtggc cgtggtggcg ctctggtggc tcgtgctgac gctcgtagcc
     1681 gggccggata gcctcgccgc gcagttcctg cccacacgcg ccctcgccgc gctgccgtcg
     1741 cttgtgacgg acgaccggtt gttcgagcac attgtcacga gcttgcggcg catcgccgtc
     1801 ggtctgctgt gggcgctcat gatcggtgta ccgctgggat ttctgatcgg ccgcctgcgc
     1861 tggctcgatg cggcgttgtc gcctacgctc cagttcctgc gcatgatttc cccgctttca
     1921 tggatgccga ttgcggtgat gtcgctcggc gtgggcgacc gggccgtgta cttcctgctg
     1981 accttcgccg cgctgtggcc gctcgtgatg agcacggccg ccggcgtcgc gcagatcgac
     2041 cggcgctggc tgcaactggg tgaaagcctc gcggcaacac gctttgaaat gctgtggcat
     2101 gtttacgtgc cgggcattgc cgtccatgtg ctgaccggca tgcggctatc catcgggatc
     2161 ctgtggatcg tgctcgtgcc ggcggaaatg ctgggcgtga gcgcagggct gggctacctc
     2221 gtgctcgata cccgcgaccg gctggcttac tccgaattga cagcggtgat cctggtgatc
     2281 ggcgcgctgg gatttctgct ggactatgcg gcgcgactcg cctaccggcg tttcggcgcg
     2341 ggacggctta acggcgagga ataatcatcg tccgggcgcc ggctcagtcc gacgctgccc
     2401 ttgattcttt agaacgccgt acgcgtcacg acgccgggca tttctcccta gactcctgtc
     2461 atcccctata aactctgcac taagtcgggt ttgccgcagc ccgcgtatcc tgtgaggtgt
     2521 cgtcgttgct ccagttgagt gctgcctgac tacggcttga tgtcattcct gaaagtgtga
     2581 ggcttttccc acggggtctc ttgaaacaac atcgcccgca tctcccgcgt tttccgcacg
     2641 gccactctca tgtggcctgg cgcgatcttt ctctgacgtc ggcaccgttc gccctgtttt
     2701 tcatcgtcat gatcgggcta atcgtctggc tggcggaccc ggctccccca agaaccatca
     2761 cgatcagcgc aggtcctcaa gacagtgcgc tcctacatac cgccgacgag tacaaaaaaa
     2821 tcctggcgcg taatggcgtc accctcaagg tgctcgaatc cgatggctcg gtgcagaacc
     2881 tgcaacgact catggacccg aagagccatg tcgatcttgc gctggtgcaa ggaggcgtgt
     2941 cggatgcagc ggccaggtcg tcgctcatgt cgcttgggag cgtcttttac gttccgcttg
     3001 tggtgtttta ccgaggcaag gggctgacgc agttgtcgga cctggagggc aaaagaatcg
     3061 cgattggtcg cgagggcagc ggcacccgac ggttgtcgct cagtttgctc gaggccaacg
     3121 gcatagcgcc gggcggtgtc actcaactca tcccgctcga cggcatggac gcggcgaagc
     3181 aactggtggc aggcgacgtt gatgcggcaa tgctcaatgg cgactcgacc acgcgggggc
     3241 tcatgctcag gctgcttggc atacccggca tttccttcat ggatttcgcg gaagcaagcg
     3301 cctatacgcg gctctttccc tatctggatg aaatcgacct gcctccgggc gtgctcgatc
     3361 tccggcggaa aataccaccg caaaccttgc atctgattgg cccgaccgtc gagatcctcg
     3421 cgcggcagaa cttgcacccg gccatatcgg atctggtcat tgaagcggcc caggaagtcc
     3481 acggcatgcc ggggctgctg caaaacgccg ggcagttccc cagtccgatc gcccgcgaat
     3541 accccatcag cgaagaggcc acgcgctact acaagtcggg gaagagtttc ctctatcgcg
     3601 tgctgccctt ctggctcgcg agcgtcgcag accggatcct ggtactgctt ctgcccgtcg
     3661 ccgtgctgct gatcccggcc ttgcggttga ttcctgcgtt gtatgcgtgg cgcgtgagat
     3721 cgcggatcta tcggt
//
LOCUS       DATGBK010000254         2473 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_211206, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000254 DATGBK010000000
VERSION     DATGBK010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211206"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..>2473)
                     /gene="tssH"
                     /locus_tag="VKJ77_03780"
     CDS             complement(52..>2473)
                     /gene="tssH"
                     /locus_tag="VKJ77_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009967199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033104 - type VI protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system ATPase TssH"
                     /protein_id="HMC44425.1"
                     /translation="ELSRLQTGNTRTPVFSVHLIALFEQAWLIASLDSQIGRIRSGHL
                     LLALTNAPELAQFAQRMSPKFASVRVDRLKHEFDQVTEGSVEAQAPTPAEETASLPQT
                     GSSRTPALDTYTSDLTARARDGSIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVG
                     KTAVVEGLALRIAAGDVPTPLRDVALHVLDMGLLQAGASVKGEFENRLKQVIDEVKKS
                     PHPIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDA
                     ALARRFQVVKVEEPSEPLAAAMLRGMSALMEKHFNVRILDDAITEAVRLSHRYISGRQ
                     LPDKAIGVLDTACAKVALAQSSTPAVIDDTKKRIERTDVELAALEREAASGAAHGERI
                     AVLREARAQDVEMLARDEARFQQERLLVNEIEELRRQIDSARDGYAPVDLKTIRATLD
                     ERVNELRTLQSAQPIVPLQVDGHVVAEIVASWTGIPLGRMVKNELQTVLNLKALLTTR
                     VIGQDHALEAIAQRVRTASANLEDPNKPRGVFMFVGPSGVGKTETALALADVLYGGER
                     KLVTVNMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPD
                     VLEMFFQVFDKGTMDDAEGREIDFRNTLIILTSNVGSAAVMAACLNKRDDELPSADAL
                     AEMLRPQLFKVFKPAFLGRMKVVPYYPIPDDVLAEIIELKLGRIARRIEANHKAVFEW
                     DESLVDAVLARCTEVDSGARNVDHILSGTLLPEIAGHVLERMASGTVITRIIAGADEG
                     GGFSYVIE"
BASE COUNT          457 a          792 c          704 g          520 t
ORIGIN      
        1 gcaactatct tggttgtttc ggaagtacgc gcgagggtcc tgtttgaacc ctcactcgat
       61 cacatagctg aacccgccgc cctcatcggc gcccgcgatg atgcgtgtaa tcaccgtgcc
      121 gctcgccatg cgttcgagca catgcccggc aatctccggc agcaaggtcc cgctcagaat
      181 gtgatcgaca ttgcgcgcgc ccgaatcgac ttccgtacat cgcgcgagca ctgcgtccac
      241 gagactttca tcccattcga agacagcctt gtggttagcc tcgatccgcc tcgcaatgcg
      301 cccaagcttg agttcgatga tctcggccag cacgtcgtca gggatcggat agtacggaac
      361 aaccttcatg cgcccaagga aggccggttt gaacaccttg aatagctggg gccgcaacat
      421 ctcggccagc gcgtcggcac tcggcagttc gtcgtctcgc ttgttgaggc aagcagccat
      481 caccgcagca gacccgacgt tcgatgtcag gatgatcagc gtattgcgaa agtcgatttc
      541 gcgaccttcg gcgtcgtcca tggtgccttt gtcgaagacc tggaagaaca tttcgaggac
      601 gtcgggatgc gccttctcta cctcatccag caacaccacc gaataaggat tgcgccgcac
      661 ggcttcggtc aacacgccgc cctccccata cccgacataa ccgggcggcg agcccttgag
      721 tcccgacacg ctatgcgctt cctgatactc gctcatgttg acggtaacga gtttgcgctc
      781 tccgccgtag agcacatccg caagtgcaag cgcagtttcc gtcttgccga caccggacgg
      841 cccgacgaac atgaacacac cccgaggttt gttcggatcc tcgaggttcg cgctagcggt
      901 acgtacgcgc tgagcgatgg cttcgagcgc atgatcctga ccgatgaccc gcgtggttag
      961 aagcgccttg agattcagta cggtttgcag ttcgttcttc accatgcgtc cgagcgggat
     1021 accggtccac gatgcaacaa tctccgctac aacatggcca tccacctgaa gcggcacgat
     1081 cggctgcgcg ctctgcagcg tgcgcagttc gttcacccgt tcgtcgagcg tcgcgcgaat
     1141 cgtcttgagg tcgactggtg catacccgtc gcgtgcagaa tcaatctgac ggcgcaattc
     1201 ctcaatctcg ttgaccagca aacgctcttg ttgaaaccgt gcttcgtcgc gcgcaagcat
     1261 ttcgacatcc tgtgcgcgcg cttcacgcaa gaccgcgatg cgctcaccat gcgcagcacc
     1321 actcgcggct tcccgttcga gcgcggcaag ctcaacatcg gttcgctcga tgcgcttctt
     1381 cgtatcgtcg atcaccgctg gcgtggaact ctgtgcgagc gcgactttcg cgcaggccgt
     1441 atcgagcacg ccgatggcct tgtcgggcaa ctggcggccg ctgatgtacc ggtgcgacag
     1501 gcgcacggct tccgtgatgg cgtcgtcgag aatgcgcacg ttgaagtgct tctccatcag
     1561 cgcgctcatg ccgcgcagca tcgcggcggc gagtggctca ctcggctctt ccaccttgac
     1621 cacctgaaac cgccgcgcga gcgcagcgtc tttttcgaag tacttcttgt actcgctcca
     1681 ggtcgtcgcg gcgatggtgc gcagctctcc gcgtgcaagc gcgggtttca gcagattggc
     1741 ggcgtcgttc tgtccggcct gcccgcctgc accaatgatc gtatgcgctt catcgataaa
     1801 caaaatgatc ggatgcgggc tcttcttcac ctcatcgatc acctgcttca agcgattctc
     1861 gaactcgccc ttcacgctag cgccagcttg cagcaagccc atgtcgagca catgcaaggc
     1921 gacgtcgcgt aacggcgtgg gcacgtcgcc ggcggcaatg cgtagcgcga gtccctcgac
     1981 cacggctgtc ttgccgacac ccgcctcgcc cgtcatgatc ggattgttct ggcggcggcg
     2041 catcaggata tcgatcgcct ggcgaatttc cgcctcgcgt ccaatcaccg gatcgatgct
     2101 gccgtcgcga gcacgtgccg tgaggtcgct cgtataagtg tcgagagctg gtgttctgga
     2161 ggagcccgtt tgcggtaatg acgctgtctc ttcagcaggc gtgggtgctt gcgcctcgac
     2221 cgatccttcg gttacctgat cgaattcgtg tttgagccgg tccacccgca ctgacgcgaa
     2281 ctttggcgac attcgttgcg cgaactgcgc aagctcaggc gcattggtca gcgcaagcag
     2341 caaatggccc gagcggatcc gtccgatctg cgaatcaagg gatgcaatca gccatgcctg
     2401 ttcgaagagc gcgatcagat gcacggaaaa gaccggagtg cgcgtgttgc cggtttgcag
     2461 ccgcgacagt tcc
//
LOCUS       DATGBK010000255         3853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_95873, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000255 DATGBK010000000
VERSION     DATGBK010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3853
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95873"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..116)
                     /locus_tag="VKJ77_03785"
     CDS             complement(<1..116)
                     /locus_tag="VKJ77_03785"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0030259 - lipid glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC44426.1"
                     /translation="MTVSTSSRAGTLMVMAGGTGGHVFPGLAVAHWMQARGWR"
     gene            complement(113..1450)
                     /gene="ftsW"
                     /locus_tag="VKJ77_03790"
     CDS             complement(113..1450)
                     /gene="ftsW"
                     /locus_tag="VKJ77_03790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015600547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HMC44427.1"
                     /translation="MSWSERFGSKLTGQRNAVANDSATLGGRASRTDRTGGVGGLGGI
                     GARVAERASGISSAVNGVTPIRSRMLDYDYSLLWVTIALLGLGIVMVYSASIAMPDSP
                     KYAQYHDYFFLVRHLVSIATAVVASIIAFKIPVSTWDKYAAKFFLFSLFLLVIVLIPH
                     IGKGVNGARRWIPLGITNMQPSEIMKLAVTIYAANYTVRKQEFMHSIGRGFLPMAVAV
                     GFVGALLLLEPDMGAFMVIAVIAMGVLFLGGVNAKLFGGLVATAVGTFALLVWASPWR
                     RERIFAYLDPWDDRYAQGKAYQLTHSLIAFGRGEWFGVGLGGSVEKLNYLPEAHTDFI
                     LAVIGEELGFVGVLIVILLFYWIVRRAFEIGRQALALDRTFAGLMAKGIGLWFGAQTF
                     INMGVNLGLLPTKGLTLPLVSYGGSGILLNCVALAVLMRVDYENRVLMRGGKV"
     gene            complement(1447..2958)
                     /gene="murD"
                     /locus_tag="VKJ77_03795"
     CDS             complement(1447..2958)
                     /gene="murD"
                     /locus_tag="VKJ77_03795"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HMC44428.1"
                     /translation="MFGEKFFDRQSPMVLVLGLGESGLAMTRWCARHGCRLRVADTRA
                     TPPNLSELAVHGIDAEFVGGEFTPALLDGGIEMVAISPGLSPLADDLRPLLDAARERG
                     VPVWGELELFAQALKSLGANGYAPKVIAITGTNGKTTTTALTGLLCERAGKTVAVAGN
                     ISPAMLDKLSEAIDNTALPDVWVLELSSFQLETAHSFAPDAAAVLNITQDHLDWHGGL
                     DAYAAAKGRIFGEKTVRVLNRDDARTMALGSGNPASVVTFGLNEPKRLGDYGLLRENG
                     IAWLAQGNDRDLSDEPAPTRRRKSEVAAEPNVYSKRLMPVDALRVRGLHNAANALAGL
                     ALARAIDLPLASLLHGLREYKGEPHRVEVIAQIEGIDFVDDSKGTNVGATVAALDGLA
                     QKTLLIAGGDGKGQDFSPLAAPVARWCRAVMLIGRDAPRIREALAETDVPLHDHATLE
                     AATQAAAQLAQPGDAVLLSPACASFDMFKNYAHRADVFRQAVTDIAAERGVML"
     gene            complement(3001..>3853)
                     /gene="mraY"
                     /locus_tag="VKJ77_03800"
     CDS             complement(3001..>3853)
                     /gene="mraY"
                     /locus_tag="VKJ77_03800"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HMC44429.1"
                     /translation="GYGVIGWVDDYRKVVHKDPRGMSSREKYFWQSVIGLFAAVYLAF
                     SVSEANNARVFDLFMAWVRSGLSMGLPARADLMLPFLKSISYPLGTWGFIAMTYLVIV
                     GSSNAVNLTDGLDGLVIMPVVLVGASLGAFAYVMGSSVYSKYLLFPHIPGAGELLIFC
                     SAMGGAGLAFLWYNTHPAQVFMGDVGALALGGALGTIAVIVRQEVVLFIMGGVFVAET
                     VSVMMQVSYFKYTKKRFGEGRRIFKMAPLHHHFELSGWKETQVVVRFWIITLMLCLFG
                     LSTLKLR"
BASE COUNT          841 a         1314 c         1054 g          644 t
ORIGIN      
        1 cgccagccgc gcgcctgcat ccagtgagcg accgcgagcc ccgggaacac gtgtcccccg
       61 gtgccgccgg ccatcaccat cagcgtgcct gcgcgagatg acgtcgaaac cgtcatacct
      121 tgcctccccg catgagcacc cggttttcgt agtccacgcg catcagcaca gcaagcgcga
      181 cgcagttcag caagatgccc gaaccaccgt agctcaccag cggcaacgtc aggcctttgg
      241 tcggcaggag accgagattc acgcccatgt tgataaaggt ctgcgcaccg aaccagaggc
      301 cgataccctt cgccatcaaa ccggcaaatg tgcggtcgag cgcaagcgcc tgacggccga
      361 tttcgaacgc gcgccgcacg atccagtaga acagcaggat cacgatcagc acgccaacaa
      421 aacccagttc ctctccgatc accgccagga tgaagtcggt gtgcgcttcc ggcagatagt
      481 taagcttctc gacactgccg ccgagtccca cgccgaacca ttcaccgcgg ccgaacgcga
      541 tcagcgagtg cgtcaactga tacgccttgc cttgtgcata gcgatcgtcc cacggatcga
      601 ggtaagcgaa gatccgttca cgacgccacg gcgatgccca cacgagcaac gcgaacgtgc
      661 caacggccgt tgcaaccagg ccgccgaaca gcttggcgtt cacgccaccg aggaacagca
      721 cacccatggc gatgaccgcg atcaccatga acgcgcccat gtccggctcg agcagcagca
      781 acgctcctac gaaaccaact gcaacagcca tcggcaaaaa gccgcggccg atgctgtgca
      841 tgaactcttg cttgcgcacc gtgtagttgg ccgcgtagat ggtcacggcg agcttcatga
      901 tttcggacgg ctgcatgttc gtgatgccga gcggaatcca gcgacgcgcg ccgttcacgc
      961 ccttgccgat gtgcggaatc agcacgatca ccagcaggaa cagcgagaac aggaagaact
     1021 ttgccgcgta cttgtcccag gtggacaccg gaatcttgaa cgcgatgatc gacgccacga
     1081 cggccgttgc tatcgataca agatggcgca ccaggaagaa gtagtcgtgg tactgcgcat
     1141 attttggcga atccggcatt gcgatcgaag ccgagtacac catcacgata ccgagtccga
     1201 gcagcgcgat cgtcacccat agcagcgagt agtcgtagtc gagcatgcgc gagcggatag
     1261 gcgtcacgcc gttgaccgca ctcgaaatac cgcttgcccg ctcggccacg cgcgcaccga
     1321 taccaccaag cccacccacg ccgcccgtgc ggtccgtacg cgacgcgcgg ccgccgagcg
     1381 tggcgctgtc gttggcaaca gcgttgcgtt gaccggtgag tttcgaacca aaacgttcgg
     1441 accagctcat agcatcactc cccgttctgc cgcaatgtcc gtcaccgctt gtcggaacac
     1501 gtccgcgcga tgtgcgtagt ttttaaacat gtcaaagctg gcgcacgccg gcgacagcaa
     1561 taccgcatcg cccggctgcg ccagttgtgc ggccgcttgc gtcgcggctt caagcgtcgc
     1621 gtggtcatgc agcggcacgt ccgtttcggc caacgcctca cgaatgcgcg gtgcatcgcg
     1681 gccaatcagc atcaccgccc ggcaccaacg cgcgactggc gccgcgagcg gcgaaaaatc
     1741 ctggcccttg ccgtcgccgc ccgcgatcag caaagtcttt tgcgccaggc catcgagcgc
     1801 cgcgaccgtc gcgccgacgt tcgtgccttt gctgtcatcg acgaaatcaa tgccttctat
     1861 ttgcgcgatc acttccacgc gatgcggctc gcccttgtat tcacgcaagc catgcagcag
     1921 cgacgcgagc ggcaaatcga tcgccctcgc gagcgccaaa ccagccagcg cgttcgccgc
     1981 gttatgcaga ccgcgaacgc gcagcgcatc gacgggcatc aggcgtttcg aatacacatt
     2041 gggctcagcg gcgacttcac ttttacgacg acgcgtgggc gcgggttcat cgctgagatc
     2101 gcggtcgttg ccttgcgcga gccatgcgat accgttctcg cgcagcaaac cgtagtcacc
     2161 gagacgcttc ggctcgttca gaccaaacgt gaccacggac gcgggatttc ccgatccgag
     2221 cgccatggtc cgcgcgtcat cacgattgag tacacgcacc gtcttttcac caaagatccg
     2281 gcccttcgct gcagcgtaag cgtcgaggcc gccatgccag tccagatgat cctgcgtaat
     2341 gttgagcaca gcagcagcgt ccggcgcgaa cgagtgtgcc gtctcaagct gaaaactcga
     2401 caactccagc acccagacat cgggcagcgc ggtgttgtcg attgcttcac ttaacttgtc
     2461 cagcatcgcc gggctgatgt ttcccgccac cgccacggtc ttgccggcac gttcacacaa
     2521 cagcccggtc agcgcggtcg tcgtggtctt gccgttggtg cccgtaatgg cgatcacctt
     2581 cggcgcgtag ccgttcgcgc caagcgactt caacgcttgc gcgaacaatt ccagctcgcc
     2641 ccacacaggg acgccgcgtt cccgcgcggc gtcgaggagc ggcctcaaat catcagccag
     2701 aggcgacagt cccgggctga ttgcaaccat ttcgataccg ccatcgagca gcgccggcgt
     2761 gaactcaccg ccgacaaact ccgcatcgat gccatgcaca gcgagttccg acaggttcgg
     2821 cggcgtggcg cgggtatcgg ccacgcgcag acggcacccg tgacgcgcgc accagcgcgt
     2881 catcgcgagg ccggattcac cgagccccag cacaagcacc atcggacttt gccgatcgaa
     2941 gaacttctcg ccaaacatcg ctttaccttt ttcctggcca actaaaaatc aacgcactta
     3001 ctaacgtaac ttcagcgtcg acaaaccgaa cagacacaac atcagcgtga tgatccagaa
     3061 gcgcacgacc acctgcgttt ccttccatcc cgacaactcg aaatggtgat gcagcggcgc
     3121 catcttgaag atgcgccgcc cttcgccgaa gcgttttttc gtgtacttga aatagctgac
     3181 ctgcatcatc acggacaccg tttccgcaac gaacacgccg cccatgatga acagcacgac
     3241 ttcctgccgc acgatcacgg cgatagtccc gagcgcgccg ccgagcgcga gcgcgccgac
     3301 atcgcccatg aagacttgcg cggggtgcgt gttgtaccag agaaacgcga gccccgcgcc
     3361 ccccattgcg gaacaaaaaa tcaacaactc acccgcgccg ggaatgtgcg ggaacagtaa
     3421 gtacttcgag tacaccgagc tacccatcac ataggcaaac gcgcctagcg atgcgcccac
     3481 cagcacgacc ggcatgatga cgagaccgtc gaggccatcg gtgagattca ccgcgttgct
     3541 cgaaccgacg atcaccaggt acgtcatcgc aatgaaaccc catgtgccga gcggatagct
     3601 gatcgatttc aggaacggca gcatcaagtc ggcgcgcgcc ggcaagccca tcgacaaacc
     3661 gctacgcacc cacgccatga acaggtcgaa cacgcgcgcg ttgttcgcct ccgacacgct
     3721 gaacgcaaga tacacagcgg cgaacaaacc gatcaccgat tgccagaaat acttttcccg
     3781 cgacgacatt ccgcgcgggt ctttatgcac caccttccgg taatcatcga cccaaccgat
     3841 cacgccgtaa ccg
//
LOCUS       DATGBK010000256         2815 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_257688, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000256 DATGBK010000000
VERSION     DATGBK010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257688"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            168..734
                     /locus_tag="VKJ77_03805"
     CDS             168..734
                     /locus_tag="VKJ77_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
                     /protein_id="HMC44430.1"
                     /translation="MQKNKSVWQKRSFYGALFGALVLASASAHADQFGLQIAGGVADH
                     DVRKADVGVVWDPNWTWWEIGGFHFTVVGEAHVAYWDIREDQASHPGIWEFGLTPVFR
                     FIKSSGWFRPYVEAGVGVRLLSHVRETETRTFSSAFQFADVVGVGAQFGAHQNYQAGF
                     RFQHLSNGGIEHPNPGINFSQIYLQYNF"
     gene            781..1176
                     /locus_tag="VKJ77_03810"
     CDS             781..1176
                     /locus_tag="VKJ77_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HMC44431.1"
                     /translation="MPAQPIDTPTEAIRELERDRFRAMVDGDGELLDALLAENASYVH
                     TNGKRETKRQFIDAITAGRRRYRQIEIQSQDVMPGGRDTWIVFGRALLEMESKNGALL
                     FPIAYTAIHIQVDGQWQLLAMQATRVALD"
     gene            complement(1398..>2815)
                     /locus_tag="VKJ77_03815"
     CDS             complement(1398..>2815)
                     /locus_tag="VKJ77_03815"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HMC44432.1"
                     /translation="DFVRKLIVENRIPADVTIEVLVQSRRELIERTFEAVEGAPRVIV
                     HLYNAIAPSFRKIVFAQSKEETKALAVEGTRIIKECAAARPGTHWIYQYSPETFSMTE
                     LSFAREVCDAVAQMWRPTPDHKMIVNLPATVEAAMPNVFADQIEWMDRNMSFRDSIVL
                     SVHPHNDRGTAVAAAELAILAGADRVEGCLFGNGERTGNVDLVTLAMNLYTQGIDPGL
                     DFSDIDGVRRVVERCNQIPVHPRHPYAGDLVFTAFSGSHQDAIRKGFAQREADTVWDV
                     PYLPIDPADLGRSYDAVIRVNSQSGKGGATYLLERGLGFTPPRRVQIEFSHAVQKVAD
                     ASGAEVSGEAICALFKREYFDAQGPASRADASTMHFDGRHVKLPDSAVADEAHAQAVA
                     AAVANAAGVAIEVTSFETAATAKGETAVFIGCRIGDQAMRFGVAVHANAVQAVANAFV
                     SAVNRVRWAGRKEVESEAVAA"
BASE COUNT          519 a          852 c          868 g          576 t
ORIGIN      
        1 aagatttcgc atgatttacc cgtcattcgg gattcgacga aacttaattc cgtgttttcc
       61 tcattcatca gaactcttct gagcactttt ttgagaccgt ctctaaaatg gcgacttgct
      121 gcattagtgg cgagcccgtc ttgtgagaat ccagctccgg agtattcatg cagaagaaca
      181 aaagtgtctg gcaaaagcgc tctttttacg gtgccttgtt cggtgcgctg gtcttggctt
      241 cggccagtgc ccatgccgat cagttcggct tgcagatcgc cggcggggtt gccgaccacg
      301 acgtccggaa ggcggatgtg ggcgtggtct gggaccccaa ctggacctgg tgggaaatcg
      361 gcggtttcca cttcactgtt gtcggtgaag cgcatgtggc ctactgggat attcgcgaag
      421 accaggcctc acatccgggc atctgggaat tcggcctcac gccggtgttc cgcttcatca
      481 agagttcggg atggtttcgg ccctacgtgg aagcgggcgt gggcgtacgc ctcttgtcgc
      541 acgttcgtga aaccgagacg cggaccttct cttcggcctt tcagtttgcc gacgtcgtgg
      601 gcgtgggcgc tcaattcggc gcgcatcaaa actaccaggc gggcttccgg tttcagcatt
      661 tatccaacgg cggtatcgaa cacccgaatc ctggtataaa tttcagccag atatatttgc
      721 aatacaactt ctgacgggga ccgcgtccat cggttcctca agcgcgagag gaatcgaaag
      781 atgccggcac aacctatcga tacgcccacc gaggcaatcc gtgaactcga gcgcgaccgt
      841 ttccgcgcaa tggtcgacgg tgacggcgaa ttgctggacg cgctgctggc ggagaatgcc
      901 agctacgtcc acaccaatgg caagcgcgag accaaacgtc aattcataga tgcgatcacg
      961 gcagggcgcc ggcgctatcg gcagatcgag atacagtcgc aggatgtgat gccgggcgga
     1021 cgggacacgt ggatcgtgtt tgggcgcgcg ttgctcgaga tggagtcgaa gaacggcgcc
     1081 ttgttgttcc cgatcgctta cacggccatc cacattcagg tcgatggtca atggcaattg
     1141 ctcgcgatgc aggcaacacg cgtggcgctg gattagcacc ggttcgacgc cgttcggtcg
     1201 ggcgtcgcgg ttcggccggc ggggcggcgc cttgtgagcg tcggccgcca tgtcgatacc
     1261 ggttgtcgtg ttttatcgcc tgcttcgcaa acttctgctg cgcgctgacc gggaagcggt
     1321 acgtgcccac gtcaccgcgc atcactcact ccccactccc cacgacccac tactcgttgc
     1381 aggaaagcgg cgtccgctta cgctgcgacc gcttcgcttt ccacttcttt gcgcccggcc
     1441 cagcgcacgc gatttaccgc gctgacaaag gcattggcga ctgcctgaac cgcgtttgca
     1501 tgcaccgcga cgccaaaccg cattgcctga tcgccgatcc ggcagccgat gaacaccgcc
     1561 gtctcaccct tcgcggtcgc agcggtttca aacgatgtca cctcgatcgc aacacccgcc
     1621 gcgttggcta ccgccgcagc gactgcctgc gcgtgcgctt catcggcaac cgcggagtcg
     1681 ggcagcttca cgtggcgtcc atcgaaatgc atggtcgagg cgtccgcccg cgacgccggc
     1741 ccttgcgcgt cgaagtattc gcgcttgaac aacgcgcaaa tggcttcgcc ggagacttcc
     1801 gcgcccgagg cgtcggcgac tttctgcacg gcatggctga attcgatctg cacgcggcgc
     1861 ggcggcgtga agccgagccc gcgttcgagc agatacgtcg ctccgccttt gcctgactgg
     1921 ctgttcacgc ggatcacggc gtcgtagctg cggccgagat cggcgggatc gatggggaga
     1981 tacggcacgt cccataccgt gtccgcttcg cgttgggcga aacccttgcg gatggcatcc
     2041 tggtgcgagc cggagaaggc cgtgaacacg agatcgccgg catacgggtg acgcggatgc
     2101 acgggaatct ggttgcagcg ctcgaccacg cggcgcacgc cgtcgatatc cgaaaaatcc
     2161 agaccggggt cgataccttg cgtgtacaaa ttcatcgcga gggtgacgag atccacgttg
     2221 cctgtgcgct cgccgttgcc aaagaggcag ccttccacgc gatccgcgcc ggcaaggatc
     2281 gcgagttccg cggcggcgac ggccgtgccg cggtcgttat gcggatgcac ggagagcacg
     2341 atactgtcgc ggaaactcat gttgcgatcc atccactcga tctgatcggc gaacacgttc
     2401 ggcatggctg cttccacggt ggccggcaaa ttcacgatca tcttgtggtc gggcgtggga
     2461 cgccacattt gcgcgacggc gtcgcagact tcgcgggcaa acgaaagctc ggtcatgctg
     2521 aacgtttccg gcgaatactg atagatccag tgcgtgccgg ggcgcgcggc ggcgcattcc
     2581 ttgatgatgc gcgtgccctc cacggcgagc gccttggttt cttccttgga ctgcgcgaag
     2641 acgatcttgc gaaacgacgg agcgatcgcg ttgtacaagt gcacgatcac gcggggggcg
     2701 ccttccactg cttcaaaggt ccgctcgatg agttcgcggc gcgactgcac gagcacttca
     2761 atggtgacat cggcgggaat gcgattttcc acgatcagct tgcgcacgaa gtcga
//
LOCUS       DATGBK010000257         1535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_165260, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000257 DATGBK010000000
VERSION     DATGBK010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165260"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..469)
                     /locus_tag="VKJ77_03820"
     CDS             complement(<1..469)
                     /locus_tag="VKJ77_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2244 domain-containing protein"
                     /protein_id="HMC44433.1"
                     /translation="MQATDLPKDAEPVVKDWLIKRNCSDSPRQFVAFYVSLALFSLLI
                     ASLLMWAGAWLVLPFTGIELLAVGVAFVIYARHAVDYERILLFHNRLLIERMDAETLT
                     QMEFNPRWVRVEPGATPRDPVKLVSRGESVPVGIHLAQHRRKQFAVELRMWLRR"
     gene            complement(765..>1535)
                     /locus_tag="VKJ77_03825"
     CDS             complement(765..>1535)
                     /locus_tag="VKJ77_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HMC44434.1"
                     /translation="LPGLRERFADASVLGMDLSAAMLARANQAEMAESEANAGWRRFL
                     PATLGKAFGARGPQLAQGDFAHLPFVASAFEMLWSNLALHWHARPDLVFPEWARVLKV
                     NGLLMFSTLGPDTLKELSGAYAQAEKSLGLAPQRHTIEFVDMHDLGDMLVESGFEIPV
                     MDQEVLTITYKSPESLLKDVRRWGAYPRDVAPQTHARALRDALHAALEARRREDGTIP
                     LTFEVIYGHAWKAVPRMTAEGHGIVRLEDIGRGSKRSK"
BASE COUNT          313 a          518 c          411 g          293 t
ORIGIN      
        1 agcgcctgag ccacatccgc aactcgacgg caaactgctt gcgacgatgc tgcgccagat
       61 ggatcccgac cggcactgac tccccccgcg acaccagctt caccggatct ctcggcgttg
      121 cccctggctc gactctcacc cagcgcggat tgaactccat ctgcgtaagc gtttcagcat
      181 ccatccgttc aatcagaagc cggttgtgaa acagcagaat ccgctcatag tcgacagcat
      241 gccgcgcata aatgacgaac gcgacaccaa ccgccaataa ctcgataccc gtaaaaggca
      301 gcaccagcca agcgcccgcc cacatcagca aactcgcgat tagcaacgaa aacagcgcaa
      361 gcgacacgta gaaggccacg aattgccgcg gtgagtcaga acagtttcgc ttgatcaacc
      421 aatcttttac gaccggttca gcgtccttcg gcagatcagt tgcttgcatc gccgtctccc
      481 gcgtcagatt tgtctcaccc gcgctgcgtg ctgctcactt gttgcttgct tcttgttcac
      541 ttcctgcaca cccgctgccc accgccaatc actaggaatg cacccaaaat catgccagcc
      601 cggcgacaaa ctgacgcatt ataggcgcgt tgcccagcat ccacaagcaa ggtggtgcac
      661 gccgcaaagc caagccgcac aagcctctgc gcccttttgc cgcatccttt tggatgcttg
      721 tcaacgcgcg tattcgaggg gtggggaagg cctttttgac tggtttactt gctccgtttt
      781 gagcctcgac ctatgtcttc gagcctcaca ataccgtgcc cttccgccgt cattcgcggc
      841 accgccttcc atgcgtgtcc atagatcact tcaaaggtca gcgggatcgt gccgtcttcg
      901 cggcggcgcg cttcaagcgc cgcgtgaagc gcgtcacgca acgcgcgggc atgcgtttgc
      961 ggcgcaacgt cacgcggata agccccccag cggcgcacgt ccttcagcag cgattccggc
     1021 gacttgtacg tgatcgtcag cacctcctga tccatcaccg gaatctcgaa accgctctcg
     1081 accagcatgt caccgagatc gtgcatatcg acgaattcga tggtgtgccg ctgaggcgcc
     1141 aggcccagtg atttttccgc ttgcgcgtac gcgccgctga gctctttcag tgtgtcggga
     1201 ccgagcgtgc tgaacatcag caggccgttc accttgagca cacgggccca ctcgggaaat
     1261 acgaggtcgg gccgtgcgtg ccagtgcagc gcgagattcg accagagcat ctcgaacgca
     1321 cttgcaacaa atggcaggtg agcgaagtcg ccctgcgcca gttgtgggcc gcgcgccccg
     1381 aatgccttgc ccagcgtggc gggaagaaac cgccgccagc cggcgttggc ttcggattcg
     1441 gccatctcag cctgattcgc ccgggccagc atggccgccg acaaatccat gccgaggacc
     1501 gatgcatcgg cgaaacgctc gcgcaggccc ggcag
//
LOCUS       DATGBK010000258         1743 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_119059, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000258 DATGBK010000000
VERSION     DATGBK010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119059"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..711)
                     /gene="ureE"
                     /locus_tag="VKJ77_03830"
     CDS             complement(<1..711)
                     /gene="ureE"
                     /locus_tag="VKJ77_03830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreE"
                     /protein_id="HMC44435.1"
                     /translation="MRTIDKRIEAKLAAPLIKRAPTLTLPFDDRCKSRLAATLDNGEE
                     VALVLPRGTVLRDGDMLVADDGGLVRVIASPQDVLVVHAHDPVTLTRAAYHLGNRHTP
                     VEVAAGQLKLEADPVLEDMLKRLGAHVDHASAPFQPETGAYGGGHKHGHDETFVEDYA
                     LAQKVFDEHHGHTHDHDHDHDHDHGHAHGAGHDHDDHSQCAHGHADHGAHDHAHDHAA
                     HAHGAGHDHGDHSQCAHGH"
     gene            complement(719..>1743)
                     /locus_tag="VKJ77_03835"
     CDS             complement(719..>1743)
                     /locus_tag="VKJ77_03835"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006758739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HMC44436.1"
                     /translation="AIDNCLSVADDTDTQVAIHTDTLNEAGFVETTVAAFKGRTIHTY
                     HTEGAGGGHAPDIIKVCGESNVLPSSTNPTRPYTINTLDEHLDMLMVCHHLDPSIAED
                     IAFAESRIRRETIAAEDILHDLGALSMLSSDSQALGRVGEVIMRTWQTAHKMKTQRGA
                     LPEDSSRNDNFRAKRYVAKYTINPAITHGIAHEVGSIEPGKWADLVFWEPAFFGVKPA
                     MILKGGMIAVAQMGDPNASIPTPQPVHYREMFATRGGALGKTSLTFVSQMALDDGIGE
                     RYGLKKQVVAVKNCRNISKADMVHNAYRPSITVDPETYQVVADGQLLTCEPATVLPMA
                     QRYFLF"
BASE COUNT          304 a          537 c          537 g          365 t
ORIGIN      
        1 atgcccatgc gcgcactgcg aatggtcgcc atgatcgtgt cctgcgccgt gcgcgtgcgc
       61 ggcatggtcg tgtgcgtgat catgagcgcc atggtccgca tgcccatgcg cgcactgcga
      121 atggtcgtca tgatcatggc ctgcgccgtg cgcgtgtccg tgatcgtgat cgtgatcgtg
      181 atcgtgatcg tgcgtgtgtc cgtgatgttc atcgaagacc ttttgcgcga gcgcgtagtc
      241 ctctacaaac gtctcgtcat gcccgtgctt gtgaccgccg ccatacgcgc ccgtctccgg
      301 ctggaacgga gcgctcgcgt gatccacgtg cgcgcccaaa cgcttgagca tgtcttccag
      361 caccggatcg gcttccagtt tcaactgtcc cgcggccact tccaccggcg tgtgccggtt
      421 gcccaagtgg tacgcggcgc gcgtcagcgt aacaggatcg tgggcgtgaa caaccagcac
      481 atcttgcgga gaggcaatca cgcgcaccag gccgccatcg tcggcgacca gcatgtcgcc
      541 atcgcgcagc accgtgccgc gcggcagcac cagcgccact tcctcaccgt tatccagcgt
      601 agcggccagg cggctcttgc agcggtcatc gaagggaagg gtgagcgtgg gcgcgcgttt
      661 gatcagcggt gcggcaagtt tcgcttcgat acgtttgtcg atcgtgcgca tgaaagtctc
      721 agaaaaggaa gtagcgctgc gccattggca agacggttgc cggctcgcag gtgagcaact
      781 ggccgtcggc tacaacctga tacgtttccg gatcgacagt aatggacggc ctgtacgcat
      841 tgtgaaccat gtcggccttc gagatattcc ggcagttctt caccgcgacc acttgcttct
      901 tcaatccgta ccgttcgccg ataccgtcgt ccagcgccat ctgcgagacg aacgtcagag
      961 aggtcttgcc caacgcgccg ccgcgagtcg cgaacatctc gcgataatgc accggctgcg
     1021 gcgtcgggat cgatgcgttc gggtcgccca tctgcgcgac cgcgatcatg ccgcctttca
     1081 ggatcattgc aggcttcaca ccgaagaacg cgggttccca gaagacgaga tccgcccatt
     1141 ttcccggctc gatggacccc acttcatgcg cgatgccatg cgtgatcgcc ggattgatcg
     1201 tgtacttggc gacgtagcgt tttgcgcgga aattatcgtt acgcgatgag tcttccggca
     1261 acgcgccgcg ctgcgttttc atcttgtgcg cggtctgcca ggtgcgcatg atgacttcgc
     1321 cgacacgccc cagcgcctgc gaatccgacg acaacatgga cagtgcgccg aggtcatgaa
     1381 ggatgtcttc ggcggcaatc gtctcgcggc gaatccgcga ctcggcgaac gcgatatctt
     1441 cagcaatcga tggatcgagg tgatggcaga ccatcagcat gtcgaggtgt tcgtcgagcg
     1501 tgttgatggt gtacggacgc gtcggattcg tcgatgaagg cagcacgttc gactcgccgc
     1561 agaccttgat gatgtccggc gcgtggccgc cgcctgcgcc ctccgtgtga tacgtatgga
     1621 tcgtgcggcc cttgaacgcg gccacggtcg tctccacaaa acccgcttcg ttcagcgtgt
     1681 ccgtgtgaat ggcgacttgc gtgtcggtat cgtcggcgac tgacaggcag ttatcgatag
     1741 ccg
//
LOCUS       DATGBK010000259         1843 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_303803, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000259 DATGBK010000000
VERSION     DATGBK010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1843
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303803"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..230
                     /locus_tag="VKJ77_03840"
     CDS             <1..230
                     /locus_tag="VKJ77_03840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017328652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycine/betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC44437.1"
                     /translation="FLTRCPNAGRLVSNLRFSTQLENQLMIPVMAKVRPADAAKDYLK
                     KNPQVLDAWLAGVKTVDGKDGLPAVKQYLGL"
     gene            245..1174
                     /locus_tag="VKJ77_03845"
     CDS             245..1174
                     /locus_tag="VKJ77_03845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006396403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-5-aminohexanoate cleavage protein"
                     /protein_id="HMC44438.1"
                     /translation="MNYEVIVTCAVTGAGDTTSKHPAIPVTPKQIAEAAIEAARAGAT
                     VAHCHVRDPRTGRGSRDPALYREVVDRIRSSDVDVIINLTAGMGGDLEIGAGEAPMQF
                     GAGTDLVGGLTRLAHVEELLPEICTLDCGTLNFGDGDTIYVSTPAQLRAGAKRIQELG
                     VKPELEIFDTGHLWFAKQMQKEGLLDDAPLFQLCMGIPWGAPADVGTLKSMVDNMPAG
                     AQWAGFGIGRMQMPMVAQAMLLGGHVRVGLEDNLYLDRGVLASNGTLVQRAVEIIERL
                     GGRALTPAEGRKKLNLPARGERLLDRRKIEQFA"
     gene            1286..>1843
                     /locus_tag="VKJ77_03850"
     CDS             1286..>1843
                     /locus_tag="VKJ77_03850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HMC44439.1"
                     /translation="MQVKTFAALGVGVIGSGWVSRALAHGLDVIAWDPAPGAEQQLRA
                     NVANAWPALERVGLAKGASQERLRFVATIEECVADADFVQESAPEREDLKLTLHEKAS
                     RAAKPEAIIASSTSGLLPTDFYASAKDASRCIVGHPFNPVYLLPLVEVVGGEQTSEAT
                     LQAASAFYESIGMRPLRVRKEVPGFI"
BASE COUNT          394 a          493 c          628 g          328 t
ORIGIN      
        1 acttcctcac gcgctgcccg aacgccggca ggctggtgtc gaatctgcgg ttcagcacgc
       61 aactggagaa ccaattgatg atcccggtca tggccaaagt gcgacccgcc gatgcagcca
      121 aggattacct gaagaagaat ccgcaagtgc tggatgcatg gctcgcgggc gtgaagacgg
      181 tggacggcaa ggacggcctg ccggcagtca agcaatatct tggtctttga aaggacgacg
      241 caacatgaac tatgaagtga tcgtgacttg cgcggtaaca ggcgcgggcg acaccacgag
      301 caaacacccg gcaatcccgg ttacgcccaa gcagatcgcg gaggcggcca tcgaggcagc
      361 gcgagcgggc gccaccgtcg cgcattgcca cgtccgcgat ccgcgcacgg gccgcggcag
      421 ccgcgacccg gcgttgtatc gcgaggtggt ggaccgcatt cgttcgtcgg atgtggacgt
      481 gatcatcaac ttgaccgcgg gcatgggcgg cgacctggaa attggcgcgg gtgaagcgcc
      541 gatgcagttc ggtgcgggta ccgaccttgt gggtggcttg acccggctgg cacacgtgga
      601 agagttgttg ccggagatct gcacgctgga ctgcggcacg ctgaatttcg gcgatggcga
      661 cacgatctac gtctccaccc ccgcgcaact tcgagctggc gcgaagcgga tacaagagct
      721 gggcgtgaag ccggaactcg agatcttcga tacaggccat ttatggttcg cgaagcagat
      781 gcaaaaggag ggtttgctgg acgacgcccc cttgttccag ctatgcatgg gtatcccctg
      841 gggtgccccg gcagacgtag gcacgctcaa gtcgatggtc gataacatgc ccgcgggtgc
      901 gcagtgggca gggttcggga tcggccgcat gcagatgccg atggtcgcgc aggcgatgtt
      961 actaggcggc cacgtgcgcg tgggtcttga agacaatctg tatctggacc gtggtgtgct
     1021 tgcaagcaat gggacgcttg ttcagcgggc ggtggaaatc atcgaacgtc tgggtggtcg
     1081 tgcgttgacg ccggcagagg gtcgaaagaa gctgaacctg ccggctcgcg gcgagcgttt
     1141 gctggaccgc cgcaagatcg agcagttcgc gtaagagcgc agaagataca agcctgaaac
     1201 ccgccgacgc aggccgtgcg aaagcgggga attcaggtaa agcatcaaag caagtagaaa
     1261 gccaaattaa taaggaatcc ggtatatgca agtcaagacg tttgctgcgt tgggcgtagg
     1321 ggtaattgga agcggctggg tatcgcgagc gttagcgcat ggacttgacg taatagcgtg
     1381 ggacccggcg ccgggcgccg agcagcaact gcgggcgaac gtcgccaatg cgtggccggc
     1441 actcgagcgg gtgggactgg caaaaggggc atcgcaggaa aggctgcgct tcgttgcgac
     1501 catcgaggaa tgcgtcgccg acgccgactt cgtgcaggaa agcgctccag agcgtgaaga
     1561 cttgaaactg acgctgcatg agaaagcatc gagggcggca aagccggaag ccatcatcgc
     1621 gtcgtcgacc tcgggcttgc tcccgacgga tttctacgcg agtgctaaag atgcgtcgcg
     1681 ctgcattgtg ggccatccgt tcaacccggt ctatttgcta ccgctggtcg aagtcgttgg
     1741 tggcgaacag acgtcggaag caacgttgca agcagcatcg gcgttttatg aatcgatagg
     1801 catgcgcccg ttgagagtcc gcaaagaggt gcccggtttt atc
//
LOCUS       DATGBK010000260         4044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_72591, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000260 DATGBK010000000
VERSION     DATGBK010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4044
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72591"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            75..302
                     /locus_tag="VKJ77_03855"
     CDS             75..302
                     /locus_tag="VKJ77_03855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006765057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2783 domain-containing protein"
                     /protein_id="HMC44440.1"
                     /translation="MNKLNIESNIADPDAFYEKLIDAHNGLTDEESHFMNAKLVLLLA
                     NHIGDADVLSEALALARGSASTANAAPEQTH"
     gene            334..1668
                     /gene="hmgA"
                     /locus_tag="VKJ77_03860"
     CDS             334..1668
                     /gene="hmgA"
                     /locus_tag="VKJ77_03860"
                     /EC_number="1.13.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012214028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004411 - homogentisate 1,2-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HMC44441.1"
                     /translation="MSEATHGLTRATGTGYQSGFGNEFATEALPDVLPIGRNSPQQVA
                     KGLYAEQLSGTAFTAPRAHNRRSWLYRIRPAAVHMPFTPVVNDRLVGDFSTVPTTPPN
                     QLRWDPLPMGDVPVDFVDSLITMAGNGSVASMSGCAIHLYAATASMRDRFFYSADGEL
                     LIVPQEGRLTIATELGVIELEPFEIAVIPRGVRFTVALPDGRARGYVCENFGALLDLP
                     DLGPIGSNGLANPRDFLTPRAAFEDREGKFELVAKFDGHLWRADIGHSPLDVVAWHGN
                     YAPYKYDLRHFNAIGSISYDHPDPSIFLVLQSPSDTPGVHSLDFVIFPPRWLVAEDTF
                     RPPWFHRNVASEFMGLVHGAYDAKEEGFVPGGASLHNCMSGHGPDAETFRKASSSDTT
                     KPHKVDDTLAFMFETPRVIRPTAYALETSQLQAEYFECWQGLRKNFSADTKA"
     gene            1665..2972
                     /gene="fahA"
                     /locus_tag="VKJ77_03865"
     CDS             1665..2972
                     /gene="fahA"
                     /locus_tag="VKJ77_03865"
                     /EC_number="3.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012214027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004334 - fumarylacetoacetase activity
                     [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetase"
                     /protein_id="HMC44442.1"
                     /translation="MNDTNQMTWQATNDRQRKSWVASANEPESDFPIQNLPFGIFNDS
                     QNRAVRVGVAIGDAIVDLTVLADNGLLLQNREVFARSSLNGLISLGQAEWRALRVQLS
                     SLLDVGNAALRDNTPLRQSALVSQADARLHLPVDIPGYTDFYSSKEHATNVGTMFRDP
                     KNALLPNWLEIPIGYNGRASSVVVSGTPVKRPNGQIKLPDAERPTFGPCRKLDIELET
                     GFIVGTNTALGEPIPCEQAEAHIFGMVLLNDWSARDIQQWEYVPLGPFNSKGFATTIS
                     PWVVPLDALEPFRCAQPEQSPEPLPYLRHSGRHGFDIRLEVALHGAGESEASTIARTN
                     FKYMYWTMAQQLAHHTSSGCNVRVGDLMGSGTISGPTPDSYGSLLESTWNGQRPLTLP
                     SGRQRTFIEDGDELILRGWCQGEGYRVGFGSCAGRIMPASESA"
     gene            2969..3646
                     /gene="maiA"
                     /locus_tag="VKJ77_03870"
     CDS             2969..3646
                     /gene="maiA"
                     /locus_tag="VKJ77_03870"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016034 - maleylacetoacetate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HMC44443.1"
                     /translation="MSDFTLHGYFRSSASYRVRIAMALKTIPFDQAPIHLVRDGGEQL
                     RPEYRSINPDGLVPSLAHAVDGETNVLTQSLAIVEYLDELHPQPPLLPRSPLDRAFVR
                     SVAQQIACEIHPLNNLRVLKYLKGTLELSEEQKDAWYRHWINLGFRSLESRLSTDRRV
                     GKFVFGDTPTLADLCLVPQVWNARRFNIPLEDYPTIIRLADHAMSLDAFSAAEPSLQP
                     DAEPPRS"
     gene            complement(3658..>4044)
                     /locus_tag="VKJ77_03875"
     CDS             complement(3658..>4044)
                     /locus_tag="VKJ77_03875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011547781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HMC44444.1"
                     /translation="VGTVMSLVNTAIGRVFAAHVPDDVLTGLLPQEAIRLAGLPAACD
                     LPADYRTRLADIRKTGIDHAFDAPVPGIGTLATPVFDHTGSIRLVIALIGSSGNFDRS
                     PQGGIAQQLLAATQRLSWRFGWISGR"
BASE COUNT          802 a         1213 c         1225 g          804 t
ORIGIN      
        1 gcgcggtggc gcgccctcga cgccgcgtcg atcaaaacgg ccctcaatcg tgcaacgtgc
       61 aacggataaa gaccatgaac aagctcaaca ttgaatcgaa cattgcagat ccggacgcgt
      121 tctacgagaa gctgatcgac gcgcacaacg gactgactga cgaggaaagc cacttcatga
      181 atgccaagct ggtgctgctg ctggcaaacc atatcggtga tgcggacgtc ctgagcgaag
      241 cgctcgctct agcacgcggg agcgcaagca cggctaatgc cgcgccggaa cagactcact
      301 gaatcgacat ttcgaattca accggagaag cacatgtcgg aagcaacaca cggcctgacg
      361 agggccactg gcaccggata tcaatccgga tttggcaacg agttcgcaac agaagcgctg
      421 ccggacgtgc tgcctatcgg acgtaattcg ccgcaacagg tcgcaaaggg actctatgcc
      481 gagcagttgt cgggcacggc cttcaccgcg ccacgtgctc acaaccgtcg ctcctggctc
      541 tatcggattc gtcctgcggc cgttcacatg ccattcacgc cagtagtcaa cgatcgtttg
      601 gtcggtgact tttcgacggt gcccaccacg ccacccaatc agcttcgctg ggacccgctg
      661 ccgatgggtg atgtgccggt cgatttcgtc gattcgctga ttacgatggc tggcaacggc
      721 tcggtcgcat cgatgagcgg ttgcgcgatt cacctctacg ccgcgacggc ttcgatgcgc
      781 gaccggttct tctattcggc cgacggtgag ttattgatcg tgcctcagga aggccgcctg
      841 acgatcgcaa cggagctggg tgtcatcgag ctggagccgt tcgagattgc cgtcattccg
      901 cgtggcgtgc gctttaccgt ggcactgccg gatggacgag cgcgcggtta cgtctgcgaa
      961 aacttcgggg cgttgctcga cctgccggat ctcgggccaa taggttcgaa cggcctcgcg
     1021 aatccccgcg acttcctgac cccgcgggcg gccttcgagg atcgggaagg caagtttgaa
     1081 ctcgttgcta agttcgatgg tcacctgtgg cgggcggata ttggtcactc gccgctcgac
     1141 gtcgttgcct ggcacggtaa ctacgcgccg tacaagtacg atctgcgcca cttcaacgcg
     1201 attggctcga tcagctacga ccatcccgat ccctcgatct ttctggtgct gcagtcaccc
     1261 agcgacacgc cgggcgttca ctcgctcgac ttcgtcattt ttccgccgcg ctggctggtc
     1321 gcggaagata cgttccgtcc gccctggttt caccgcaacg tggcgagcga gttcatgggt
     1381 ctcgtgcacg gtgcgtatga cgcgaaggaa gaagggttcg tgccgggagg cgcaagcctg
     1441 cataactgta tgtccgggca tgggccggat gcggagacgt tccgcaaggc gtcgagctcc
     1501 gatacgacga agccgcataa ggtcgatgac acgcttgcct tcatgttcga gacaccgcgc
     1561 gtcatcagac cgactgcgta tgcacttgag acgtcgcaat tgcaggcgga atacttcgag
     1621 tgctggcagg gcttgcggaa gaacttttcg gcggacacca aagcatgaat gacaccaatc
     1681 aaatgacctg gcaagcgacg aatgatcggc aacgcaagag ctgggttgcc tcggcgaatg
     1741 aacccgagag cgacttcccg attcaaaacc tgccgttcgg gatctttaac gatagtcaga
     1801 accgggcagt tcgagtcggc gtcgccatcg gcgatgcgat cgtggatttg actgttctgg
     1861 ccgacaacgg cctgctgttg cagaatcgag aggtattcgc gcgctcttca ctgaacggct
     1921 tgatctcact tggtcaagcc gagtggcgcg ccttgcgagt acagctgtcg tcgctactcg
     1981 atgtcggcaa tgcggcgctc cgagacaaca cgccgctgcg gcagagtgcg ctcgtttcac
     2041 aggctgacgc gcgcttgcat cttcccgtcg atatcccggg ctacaccgat ttctattcct
     2101 cgaaggagca tgcgaccaac gtcgggacga tgttccgcga ccccaagaac gcgcttttgc
     2161 cgaactggct cgaaatcccc atcgggtata acggccgagc ttcgtcggtg gtcgtcagcg
     2221 gcacgccggt caaacgtccc aacggccaga tcaagctgcc ggatgccgag cggccgacat
     2281 tcggaccatg tcgaaagctc gatatcgaat tggagacggg cttcatcgtg gggacgaaca
     2341 ctgccctcgg cgaaccgatt ccgtgcgaac aggcggaagc gcacatcttt ggcatggtgc
     2401 ttctcaatga ctggagtgca cgcgatatcc agcaatggga atacgtgccg ctcgggccat
     2461 ttaattcgaa gggattcgcc acgacaattt ctccgtgggt cgtgccactt gacgcgctgg
     2521 agccgttccg gtgcgctcag ccggaacagt cgcccgagcc gctgccgtat cttcgtcatt
     2581 ctggccgtca tggcttcgat atccgccttg aagtggctct gcacggcgca ggcgagagcg
     2641 aggcaagcac aatcgcgcgg accaatttca agtacatgta ctggacgatg gcacagcagc
     2701 tcgcgcatca cacatcgtcg ggttgtaacg tgcgagtagg cgacctgatg ggctcaggca
     2761 cgatcagcgg gccgactccg gattcgtacg gttcactgct cgaatcgacg tggaacggcc
     2821 aacgcccgtt gacgttgcca tccggccggc aacgcacatt catcgaggac ggcgacgagc
     2881 ttatattgcg cggctggtgt cagggcgaag gctaccgggt cggtttcggt tcgtgtgcag
     2941 ggcggatcat gcccgcgtcg gagagtgcat gagcgatttc acgctgcacg gttactttcg
     3001 cagttcggcg tcctatcgag tccggatcgc gatggccctt aagacaatcc cttttgatca
     3061 ggcgccgata catctcgtgc gcgatggagg cgagcaactg cgccccgagt accggtcgat
     3121 caatccggac ggactggtgc cgtcgctggc tcacgcggtc gacggcgaga cgaacgtcct
     3181 gacgcagtcg cttgcgatcg tcgaatatct ggacgagcta cacccgcaac cgccgctgct
     3241 gccacgctcg ccgctcgatc gtgctttcgt gcgatcggtt gcccagcaga ttgcctgcga
     3301 gattcatcca ctgaataatc tgcgcgttct caaatacctg aaagggactt tggagctttc
     3361 ggaagagcag aaggacgctt ggtatcggca ctggatcaat ctcgggttcc gatcgctgga
     3421 gtcgcgcttg tcgacggatc ggcgggtcgg gaagttcgtc ttcggcgaca cgccgacgct
     3481 tgctgatctc tgtctggtcc cgcaagtatg gaacgcgcgg cgtttcaaca taccgctcga
     3541 ggactacccg acaatcatcc ggctggccga tcatgcaatg agccttgatg cgttctctgc
     3601 ggccgagcct tccctgcagc cggatgccga gccgccccgg tcctagtcgc actgatatca
     3661 acgaccgctg atccagccaa agcgccacga caaacgttgc gttgcggcga gcaattgctg
     3721 cgcgatcccg ccttgcgggc tgcgatcgaa gtttcctgac gaaccaatca gcgcaatgac
     3781 caggcgaatg ctgccggtgt gatcgaacac cggcgtggcc agcgtgccga tgcctggaac
     3841 cggcgcatca aaagcgtgat caatccctgt cttgcgaatg tcggcgagac gcgtgcggta
     3901 gtcagcggga aggtcgcagg ctgccggtaa gcctgcgagc ctgatcgctt cctgcggcaa
     3961 cagaccagtt agcacgtcat caggcacgtg ggcggcgaac acccggccga tcgcggtatt
     4021 gaccagcgac atgacggtgc cgac
//
LOCUS       DATGBK010000261         1545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_119076, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000261 DATGBK010000000
VERSION     DATGBK010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119076"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..574)
                     /locus_tag="VKJ77_03880"
     CDS             complement(<1..574)
                     /locus_tag="VKJ77_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44445.1"
                     /translation="MKSRIAFIAAGAIALLAPFAAQASTGANTVITNVATVNYNDAGN
                     NPQAAVNSLAVLVTVTLVPSAPTLSSPVAQTIAQGTSATLTYTITGTANGQDTYTLSS
                     TATPSTDSAVTPTLQANITLGGTTLAADAVAGALTILVPYDGAGGTTVNGIGAGSSIV
                     VGGNAYTVTGITKNPAANTTTVTLSTAIAGT"
     gene            complement(648..1130)
                     /locus_tag="VKJ77_03885"
     CDS             complement(648..1130)
                     /locus_tag="VKJ77_03885"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44446.1"
                     /translation="MGTRVTAVFSSLTAILLLAAPALAKPRITIAIQQFKEVADGKNT
                     KLVPVTAANPGDIVEYQLAYKNEGDEPATNAVIEDPIPKGTTYLANTASGDAEITFSS
                     DKGQTFAPPVRLTYEVKLPSGAVEKRTATPAEYTNVRWTVKQVAAGTGGKVVFRVRVN
                     "
BASE COUNT          254 a          437 c          508 g          346 t
ORIGIN      
        1 tggtgccggc gatggcggtc gacagcgtga cggtggtggt gttcgcggcc gggttcttgg
       61 tgatgcccgt gaccgtgtac gcgttgccgc cgacgacgat ggacgagccc gcgccgatgc
      121 cgttgacggt ggtgccgccc gcgccgtcgt aggggacgag gatggtgagg gcgccggcga
      181 ctgcatccgc ggcgagcgtg gtgccgccga gggtgatgtt ggcctgcagc gtcggggtga
      241 ccgcgctgtc ggtcgacggc gtggcggtcg aggacagggt gtacgtgtcc tggccgttgg
      301 cggtgccggt gatggtgtac gtcagcgtgg cgctcgtgcc ctgcgcgatg gtctgcgcga
      361 ccggcgagct aagcgtgggt gccgacggaa ccagcgtcac ggtgacgagc accgccaagc
      421 tgttgactgc cgcttgcggg ttgttgccgg cgtcgttgta gttcacggtc gcgacgttgg
      481 tgatgacggt gttggcaccg gtagacgctt gcgccgcgaa cggcgcgagc agggcgatgg
      541 ccccggctgc gatgaatgcg atcctcgact tcattttaca gtcctctctc tggtgaaaca
      601 ttggtttggt ttgggaaaaa agtgcgtggg cttgcgatgg cttcaaatca gttgacgcga
      661 acgcggaaga cgaccttgcc tcccgttccg gccgcgacct gcttcaccgt ccagcggacg
      721 ttcgtgtatt cggccggcgt cgctgtgcgc ttctcgaccg cgcccgaagg cagcttcacc
      781 tcgtaggtga gccgcaccgg cggcgcgaag gtctggccct tgtcgctgga gaaagtgatc
      841 tcggcgtcac cgctggcggt gttcgcgaga taggtcgtgc ccttggggat cggatcttcg
      901 atgaccgcgt tggtggccgg ctcgtcgcct tcgttcttgt acgcgagctg gtactcgacg
      961 atgtcgccgg gattggccgc ggtgacgggc acgagcttcg tattcttgcc gtcagcgact
     1021 tccttgaact gctggatcgc gatcgtaatc cgcggcttcg ccaacgccgg cgcggcgagc
     1081 agcaggattg cggtcaggct ggaaaaaact gcggtcacac gtgtacccat cggatttacc
     1141 tcgacctcga aaagatgcgt ccagctgctt aagttcactg aggaaaccag gaccgtcaaa
     1201 ttactgtcaa tatacgacct tagtcttgct gccattttgt accgtacggc tgaaacctga
     1261 gcggcttcac tggattttta tagactttaa aagctagtaa ttacagatac ttgagtctct
     1321 gtagcctcat gactcaccga ggctcacaag ccctcctccg cactcctgtc aaaaccctgt
     1381 ttccacgctg atccagcgat cgtgatccaa tgcgcggata taggggttgt tatgcagtat
     1441 tgtcgcactt ataggcatat ctttattgac ggcttgattt tactccgaga ccgctccgca
     1501 cgccttgcga atcgaagcga atcggccatt tcggcgccgc cgcac
//
LOCUS       DATGBK010000262         2102 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_95984, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000262 DATGBK010000000
VERSION     DATGBK010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95984"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..315)
                     /locus_tag="VKJ77_03890"
     CDS             complement(<1..315)
                     /locus_tag="VKJ77_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018912922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44447.1"
                     /translation="MNEQLVTKPVLRSVSSPISPSAPSLGRRWIDDHHRWLAVAALLL
                     LLAVAGALWWSFDRAPAMHYSTVVATQGDVVRAVTATGTVNPELTIIVGSYVSGVIQS
                     LSC"
     gene            complement(627..1586)
                     /locus_tag="VKJ77_03895"
     CDS             complement(627..1586)
                     /locus_tag="VKJ77_03895"
                     /inference="COORDINATES: protein motif:HMM:NF014601.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase N-terminal
                     domain-containing protein"
                     /protein_id="HMC44448.1"
                     /translation="MNFLIYGAGVIGTLYAAKLRDAGNQVTVLARGKRLTDIRRYGLA
                     LENVVSGDLSTTQVDTIERLAPDDHYDVALVTVRRDQLAGVLPELKANRVIPTFLFML
                     NNPAGSTGLVQTLGRDRVLLGFPGAGGTPDGHVMRYALIAQQPTMLGELNGRPTARLQ
                     KLAEIFRASGFATRISNDMDAWLKAHAFFVTAICGAIYIAGGNCHNLSENKAALALMA
                     SGVHEGFAAVRALGLVVRPFALRVLFVWLPQWFAIAYWRRYFASRMADHVFGSHARSA
                     SNEMREIAEDCRILLDMSGVEARALPRLFHAIGVYADRAASIP"
     gene            complement(1617..>2102)
                     /locus_tag="VKJ77_03900"
     CDS             complement(1617..>2102)
                     /locus_tag="VKJ77_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44449.1"
                     /translation="LLAMPVRPIEVMLAKVVPYIVIGYVQVTLIVVIAALVFGMPIRG
                     SILLLALALGLFIASNLALGITFSTVARNQMQATQMSQFMLLPSFFLSGFMFPFKGMP
                     VWAQWLGELFPMTHALRIARGLLLKGNGLAEIAPELWPIAAFTLVVTVIATFSYRETL
                     D"
BASE COUNT          458 a          618 c          672 g          354 t
ORIGIN      
        1 gcaggacagc gactgaatga cgcccgaaac gtaactgccg acgatgatcg tgagctcggg
       61 attgacggtc ccggttgccg tcacggcgcg cacgacgtcg ccttgcgtcg ccaccaccgt
      121 cgaataatgc atggccgggg cgcggtcgaa gctccaccac agggcgccgg ccactgccaa
      181 aaggaggagg agtgccgcga cggccagcca gcggtgatga tcgtcgatcc agcgtcggcc
      241 gagcgacggg gcgctaggag agatcggcga ggaaaccgac cgcaatacag gcttggttac
      301 gagttgctcg ttcatctggc cacgctccaa ggcgtattcg tcaggccgtc acgatacgtg
      361 tcaggctgct tcgacctggc tcaaagcgcg tcgccgccgt gtttgttgaa gcgagtgagt
      421 gagacctcgg catggaacag ccacatgtcc ggtaccgtgc aacgagcgga ccgccctatt
      481 gttccacggg agacgaagat gaacgtacga cagcgcgtcg gattgagccc tctggggata
      541 cggaacgagc gtctcggtgg taaatgcatc cccatcggcg ccgccgatac aattgaacga
      601 cacgagtggc atggagacgg cgactgctac gggattgatg cggcgcgatc cgcataaacg
      661 ccgatcgcat gaaaaagccg gggtagcgct cgggcctcca caccactcat gtcgagcaaa
      721 atccggcagt cctcggcgat ttcgcgcatc tcatttgagg cagaacgagc atggctgccg
      781 aaaacgtggt ccgccatcct ggatgcgaag tagcgccgcc aataggcaat ggcgaaccat
      841 tgcggcagcc acacaaagag cactcgcagc gcaaacggcc tgacgaccaa gccgagtgcg
      901 cgcacggcgg cgaagccctc gtgtacgccg cttgccatca aggccagcgc ggctttgttt
      961 tccgagagat tgtggcagtt gcccccggct atgtagatcg cgccacaaat agcggtgacg
     1021 aagaaggcgt gggccttcag ccaagcgtcc atgtcattgg aaatccgggt cgcaaagccc
     1081 gatgcccgga atatttctgc cagcttctgc agccgcgcgg tcggtcgacc attcaattcg
     1141 ccgagcattg ttggttgttg cgcaatcagc gcgtaacgca tgacgtgtcc gtccggtgtc
     1201 ccgcccgctc ccgggaagcc gagcagtacc cgatctcgtc cgagcgtctg gacaagaccg
     1261 gtcgaaccgg caggattatt cagcatgaag aggaatgtgg gaatgacacg attggccttg
     1321 agctcaggca ggacaccggc cagttgatcg cgtctcacgg tgactagcgc gacgtcataa
     1381 tgatcgtctg gagcaagtcg ctcgatcgtg tcgacctggg tcgtcgatag atcgccgcta
     1441 acgacgtttt caagcgccag gccgtagcgg cggatatccg tgaggcgttt gccgcgcgcc
     1501 agcacggtta cttggttgcc ggcatcccgg agtttggctg cgtagagagt cccgatgaca
     1561 cccgcgccgt agatcaaaaa gttcattggc gtctcccggt gcatcggtgg acgtaactag
     1621 tcgagcgtct cccggtagga gaaggttgcg atcacggtga ccaccaacgt gaaagcagcg
     1681 attggccaca gctccggagc gatctcggca aggccgttgc ctttcagcag caagccgcgg
     1741 gcgatgcgca gcgcgtgggt catcggaaac agctcgccga gccactgcgc ccagaccggc
     1801 atgcccttga acggaaacat gaagccggac aggaagaagg acggcagcag catgaactgc
     1861 gacatctgcg tggcctgcat ctggttacgc gcgaccgtcg agaaggtaat gccaagagca
     1921 aggttgctgg caatgaagag cccgagcgcc agggcgagca gcagaatcga gccgcggatc
     1981 ggcatgccga acaccaatgc cgcgatcacc acgatgagcg tgacctgcac atagcctatg
     2041 acgatgtagg ggacgacctt ggcgagcatc acctcgatgg gccggaccgg catggcgagc
     2101 ag
//
LOCUS       DATGBK010000263         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_280890, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000263 DATGBK010000000
VERSION     DATGBK010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280890"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..1513)
                     /locus_tag="VKJ77_03905"
     CDS             complement(8..1513)
                     /locus_tag="VKJ77_03905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY family carbohydrate kinase"
                     /protein_id="HMC44450.1"
                     /translation="METYYLAIDVGTGSARAALVNSRGVIVSIAAREHEQIVPRYGWS
                     EQRPTDWWQGVAGAIQEVLDSTPHAAENIAAICACGQMHGTVLIDANGQLTSETAPLW
                     NDKRTLAQVAAFRANHAAVSYLPLTANPATPAWPGFKLQWLKQNEANAYERAATVFMP
                     KDYINFRLTGERAWDWSDASTSFLMDPETRSWSQPMLDTLGLDGSKLPPIRSPQEILG
                     TVTSEAAQATGLREGTPVLVGGADYALSMLGSGVYGPGLGSDITGTSSIITVIADTPM
                     LHPEVSNMVSAEGLWGRFMLLDSGGDAVRWARRAFHENTLGYEAVAQKAADAPVGSEG
                     LFFLPYLTGERLGEHSNSRAQFFGIAAKHGTAHLHRAVLEGVAFGVRRHIGVIESAGV
                     HMERLVAASGGAKAALWLEIKASMYRTPILVPAQLECGVIGCAILAATAHGQFARLGD
                     AVAAFVQFEREVLPDPRASDTYDRMMPIFERLYTSSQQFYDDLDRLAEAHA"
     gene            complement(1744..>2123)
                     /locus_tag="VKJ77_03910"
     CDS             complement(1744..>2123)
                     /locus_tag="VKJ77_03910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006767092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EmrB/QacA family drug resistance transporter"
                     /protein_id="HMC44451.1"
                     /translation="PADKIPAAAGLSNFTRVFAGAVGTSLVSTGWNDRTILHHAQLAE
                     QTSVNNPNFVASIGALQHTLGGSAAQAMAFFESSLNAQAAMLGLNDIFWLSAVIFIAI
                     IPLIWITKPSKDGAAAAAGAGGH"
BASE COUNT          410 a          642 c          623 g          448 t
ORIGIN      
        1 gcttgcgtca tgcatgagcc tcggcgagac gatccaggtc gtcgtagaac tgttgcgagc
       61 tcgtgtagag ccgctcgaag atcggcatca tccgatcgta ggtgtcgctg gcgcgcgggt
      121 ccggcaagac ctcacgttca aactgaacga aggccgcaac tgcatcgcct agacgcgcaa
      181 actggccgtg cgccgtcgcg gcaagaatcg cgcagccgat cacaccgcat tcaagttgag
      241 ctggcacgag gatcggtgtg cgatacatgc ttgccttgat ctcaagccac agcgccgcct
      301 tggcgccgcc gcttgctgcg accagccgct ccatatgcac acccgccgat tcgatcacgc
      361 caatgtgccg ccgcacgccg aacgcgaccc cttccaatac cgcgcgatgc aaatgcgctg
      421 tcccatgctt ggctgcaata ccgaagaact gggcgcgcga attcgaatgt tcgccaagcc
      481 tttcacccgt caagtaaggc aagaagaaca ggccctcgga accgaccggg gcatcggccg
      541 ctttctgcgc aacggcttcg tagcccaagg tgttttcgtg gaatgcacga cgcgcccagc
      601 gcactgcgtc gccgcccgaa tcgagcagca tgaatcttcc ccagagccct tccgccgaga
      661 ccatgttcga gacttccggg tgcagcatgg gggtgtccgc gatcaccgtg atgatcgacg
      721 acgtaccggt gatatccgaa ccgagaccgg gtccgtatac gcctgagccg agcatggaaa
      781 gcgcatagtc cgcaccgccc acaagcaccg gcgtaccttc gcgcaggccg gttgcctgag
      841 ccgcttccga ggtgaccgtt cccagtattt cttgcggcga gcggatgggt gggagcttgc
      901 tgccgtcgag accgagtgtg tcgagcatgg gctgggacca tgagcgtgtc tccgggtcca
      961 tcaggaagct cgtggaggca tcgctccagt cccaggcacg ctcgcctgtc agccggaagt
     1021 tgatatagtc cttcggcatg aacaccgttg cggcacgttc atacgcattg gcctcgttct
     1081 gtttgagcca ttgcaatttg aacccgggcc atgcgggtgt tgccgggttg gccgtcaatg
     1141 gcagatacga cacagcggcg tggttcgcgc gaaaagcggc cacttgagca agggtgcgtt
     1201 tgtcgttcca gagcggtgcg gtttcgctgg tgagctgacc gtttgcatcg ataagaaccg
     1261 tgccgtgcat ctggccgcac gcgcagatgg ccgcgatgtt ttcggcggca tggggtgtgc
     1321 tgtccaggac ctcttgaatt gcaccggcta cgccctgcca ccagtcggtc gggcgctgct
     1381 cagaccagcc gtagcgcggc acgatctgct cgtgttcgcg cgccgcaatg cttactatga
     1441 cgccacgcga attgaccagg gcggcgcgag cgctacccgt gccaacgtcg atggcaaggt
     1501 aatacgtctc cattactcga gtcctcaggt actgcctgaa cgagcaagca aagactcgct
     1561 gagccgacca gcgagtcttt gcgtctatgt tttattaacg ttattttgac tacgtttttt
     1621 gatcgtgtca attgcggcca atcccgctta aaagcggttt acccgtaaca caggctccat
     1681 gcgcattgca caatatcgtt gtttttgcta actttatgga tcattgattc catcggttca
     1741 aacctagtgc ccccctgctc ctgcagccgc tgcggcgccg tccttgctcg gtttggtgat
     1801 ccagataagc gggatgatcg cgatgaaaat gaccgccgac agccagaaga tatcgttcag
     1861 tccgagcatg gctgcttgtg cgttgagcga tgattcgaag aacgccattg cttgcgccgc
     1921 acttcctcca agcgtgtgtt gcaatgcacc gatactcgcg acgaagttcg gattattgac
     1981 gctcgtttgt tcggccagtt gcgcatgatg caggatcgtc cgatcgttcc agccggtact
     2041 gacgagcgat gttccaacgg cacccgcgaa gacccgcgtg aaatttgaca gccctgcggc
     2101 agcgggtatc ttgtccgccg gca
//
LOCUS       DATGBK010000264         2473 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_3003, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000264 DATGBK010000000
VERSION     DATGBK010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3003"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VKJ77_03915"
     CDS             <1..261
                     /locus_tag="VKJ77_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase fold domain-containing
                     protein"
                     /protein_id="HMC44452.1"
                     /translation="VRAFPLAQSCDRTPAQALIVAAAYDPLYDDAHEFARFLEANGGR
                     TEVIDAHDMTHGFGRIQAHSKSAAVWMKKTSERFGELLHAVR"
     gene            complement(384..1253)
                     /locus_tag="VKJ77_03920"
     CDS             complement(384..1253)
                     /locus_tag="VKJ77_03920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015004079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44453.1"
                     /translation="MKVLASGCCTLLRGVIRTGACALLLGFAIGAQAQTVQGGSIIAA
                     PGATLPASAAAAPSRLDEILARGTLRVCTTGDYKPYSFLRPDGQFEGIDIDAAQNLAQ
                     SMNVKAEFIKTSWSNLMNDFVAKCDIAVGGVSTSLERQKRAFFTEPYMVDGKTPIVRC
                     ADVDKYQTVAQIDQAGVRTIVNPGGTNEKFAKQFFTHSQLIEYPDNVTIFKQILDGQA
                     DVMVTDASETLLQQKLNPGLCSVHPDKPFQFGEKAYLLPRGDVVFQQYVDQWLHLSRS
                     TGEFQAVLDKWLK"
     gene            1428..>2473
                     /gene="hemE"
                     /locus_tag="VKJ77_03925"
     CDS             1428..>2473
                     /gene="hemE"
                     /locus_tag="VKJ77_03925"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HMC44454.1"
                     /translation="MPSTLLNDTFLRALQRQPTDYTPIWLMRQAGRYLPEYNATRSRA
                     GSFLGLATNPDYATEVTLQPLERFPLDAAILFSDILTIPDAMGLGLNFVQGEGPRFER
                     TVRTEEDVAKLHVPDIDATLRYVTDAVSQIRRALTDAQGRQKVPLIGFSGSPWTLACY
                     MVEGGGSPDHHTVKAMAYTRPDLMHRILDINAQAVVAYLNAQIEAGAQAVMIFDTWGG
                     ALADGAYQRFSLDYIAKVVAGLKREHDGVKVPVITFTKGGGLWLEQIAAIGVDAVGLD
                     WTVNLRQAREKVGDRVALQGNIDPAVLFASPAVIRTEARAVLDGFCNFPGHVFNLGHG
                     ISQFTRPENVAELV"
BASE COUNT          482 a          758 c          734 g          499 t
ORIGIN      
        1 gtgcgggcgt ttccgctcgc gcagtcctgc gatcggacgc cggcgcaggc gttgattgtt
       61 gctgcagcct acgatccgct ctatgacgac gcccatgaat ttgcgcgttt tctggaagcg
      121 aacggcggcc gtaccgaggt aattgacgcg cacgacatga cgcatggctt cggccggatc
      181 caggcgcatt caaaatcggc ggcggtctgg atgaaaaaaa cgtcggaacg cttcggtgaa
      241 ttgttacatg cggtgcgttg acttttcgat gccgagcgac atcagcttac gcgatactta
      301 cgtaaagcta tcaattttct gaacttgcca tgagcgctag ccgacgtgca aaaaaggcgg
      361 cccgactccg gccgccttcg ctctcatttc agccatttat cgagaactgc ctgaaactcg
      421 cctgtcgagc gtgacaggtg cagccattga tcgacatatt gctggaacac cacatcgccg
      481 cgcggcagca gatacgcttt ttctccgaac tggaacggct tgtccggatg gaccgaacac
      541 aagccgggat tcagcttttg ctggagtagc gtttcggagg cgtcggtgac catcacgtcg
      601 gcttgaccat cgaggatttg cttgaagatg gtcacgttgt cggggtactc gatcagttgc
      661 gagtgcgtga agaactgctt cgcgaacttc tcgttcgtac cgcccggatt gacgatggtg
      721 cgtacgcccg cttgatcgat ttgcgcgacg gtctggtatt tatcgacgtc ggcgcagcgg
      781 acgataggtg tcttgccgtc gaccatgtag ggctcggtga agaatgcgcg tttctggcgt
      841 tcgagcgagg ttgaaacccc gccgaccgca atgtcgcact tcgcgacgaa atcgttcatc
      901 aggttcgacc acgatgtctt gatgaactcg gctttgacgt tcatcgactg ggcgaggttt
      961 tgcgcggcgt cgatgtcgat gccttcgaac tggccgtccg gcctcaggaa cgagtacggc
     1021 ttgtagtcgc ccgttgtgca aacgcgcagc gtgccgcgcg cgaggatttc gtcgagtctc
     1081 gatggagcgg ccgccgcgct ggccggtagc gttgcgccgg gagcggcgat gatgctaccg
     1141 ccttgcacgg tttgcgcctg cgcgccgatg gcgaagccga gcagcagcgc gcaagcacct
     1201 gtgcgaatga caccgcgaag caacgtgcaa caaccagagg caagaacttt catcgacact
     1261 cccggaaaga ttatttcagc caccgatgat atcgaaggga gacgtcgttg gcatccggtt
     1321 ttaaaggcgc accgaccctt ggccacaacg ccaaaatccc ccttccttga atgcgaacgc
     1381 aaaccctcgt ccggtagaat gcccctttgc cctacgctcc aatccccgtg ccttccacac
     1441 tcctgaacga cactttcctg cgcgcgctgc agcgccagcc caccgactac acgccgatct
     1501 ggctgatgcg tcaggcgggc cgctacctgc ccgagtacaa cgccacgcgt tcgcgcgccg
     1561 gtagcttcct ggggctcgca accaatcccg actacgcgac tgaagtcacg cttcagccat
     1621 tggagcgctt cccgctcgac gccgccattc tgttctcgga catcctgacc atccccgacg
     1681 caatgggcct cggcctgaat ttcgtccagg gtgaaggtcc ccgattcgaa cgcacggtcc
     1741 gcaccgaaga ggacgtggcc aagctgcacg tgccggatat cgacgccacg ctgcgctacg
     1801 tgaccgacgc ggtatcgcaa atccgccgcg ccctaaccga cgcgcaaggc cgccagaaag
     1861 tgccgctgat cggtttttca ggcagtccct ggacacttgc ctgctacatg gtcgagggtg
     1921 gcgggtcgcc cgatcaccat acggtcaagg ccatggccta cacccggccg gacctgatgc
     1981 atcgcatcct cgatatcaac gcgcaagcgg ttgtcgccta tctgaacgca cagatcgaag
     2041 cgggcgcgca agccgtgatg atcttcgata cctggggcgg cgcactcgcc gacggcgcgt
     2101 atcaacgctt ctcgctcgac tacatcgcga aagtggtcgc aggattgaag cgcgaacacg
     2161 acggcgtcaa ggtgccggtg atcacgttca cgaagggcgg cggcttgtgg ctggaacaaa
     2221 tcgccgcaat cggcgtggac gcggttggcc tcgactggac cgtgaacctg cgtcaggcgc
     2281 gcgaaaaagt gggcgatcgg gtcgcgctcc aggggaacat tgatccagcg gtgctatttg
     2341 catcgccggc cgtgattcgc accgaagcgc gcgccgtgct cgacggcttc tgcaatttcc
     2401 ctggtcatgt cttcaacctt ggccacggta tttcgcagtt cacacgcccg gaaaacgtgg
     2461 cggaactcgt tga
//
LOCUS       DATGBK010000265         2773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_119133, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000265 DATGBK010000000
VERSION     DATGBK010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2773
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119133"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VKJ77_03930"
     CDS             complement(<1..306)
                     /locus_tag="VKJ77_03930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006414519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF938 domain-containing protein"
                     /protein_id="HMC44455.1"
                     /translation="MSPNNADNPDTLRRVAPAAERNRGPILDVLSRVLPKAGVVLEIA
                     SGTGQHAVHFAAALPTVTWQPSDPDAASRASIDAWRKHASLANLNAPLALDVRSAPWP
                     "
     gene            912..1478
                     /locus_tag="VKJ77_03935"
     CDS             912..1478
                     /locus_tag="VKJ77_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015913173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HMC44456.1"
                     /translation="MQPDSPAGKPGQSLEPLSDELIDFASEVFDVARRGDAAMLDTLL
                     HKGLPPNLRNDKGDTLVMLASYHGHADAVRVLLEHKADPDLRNDNGQTPIAGAAFKGY
                     KPVIEVLLEHGADVEGASPDGRTALMIAAMFNRMEMVEFLIEKGANPDAKDANGFTAR
                     DAAAKMGAPDTAARLAQATEAKSRPPGV"
     gene            1639..2721
                     /locus_tag="VKJ77_03940"
     CDS             1639..2721
                     /locus_tag="VKJ77_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009771589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44457.1"
                     /translation="MSGGFPLRAYEWHWRTVARTLAILLVLAVMSGCSLFPHQAAAPI
                     VDLSTPQPPVEPEVVEPEPASTPVATLPPAEPKAPRPAPKRRVVVPKKPPPPPPPPVE
                     EKAPPTPPPLLTTRIMQHEQIRGLLDSEIQRPDGKVIGRAVDMYADATGKPKIMIVNL
                     AGFLGVGDRKVTFPWTAFRFNPATKKAPITFAIPTPGSNGASSAAKTKAQDASARPGS
                     VNDVPPTLAQLIDSNVSQKSGARMGRVVDVLIDSEAQPQALVIDLSDSLAADKRQVAA
                     NWPDLHVVSRNKVMQLQLDFTDAQIKAAPTYSPDQPIKIISPVVPPPEPAESPEPASA
                     PAPAAASGPESGAKAGAAAVARPSKQ"
BASE COUNT          575 a          929 c          865 g          404 t
ORIGIN      
        1 gggccaggga gctgaccgga catccagggc aagcggcgcg ttgagattgg cgagtgaagc
       61 gtgcttgcgc caggcgtcga tggacgctcg cgacgcggca tcgggatcgc tcggttgcca
      121 ggtgacggta ggcaacgctg cggcgaagtg gacagcatgc tgccccgttc cgctcgcgat
      181 ttcgaggact acgccggcct tgggcaggac gcggctcagc acgtcgagaa tgggtccgcg
      241 attgcgttcg gcggcgggcg ccacgcggcg gagcgtgtcg gggttatcgg cgttgttggg
      301 gctcacggtg catttccaga tgaagtgctg gcgagcgtaa gcgcgcgatc ggcacaggtc
      361 aagcaaagag ccgccgatag ccttgccggc gaacgcgagg aaaaatgccg gcggcgcaag
      421 cctggatgac ctgccgatgc acatcggaga aatgagcctg aaagaggcgg cgatgaggag
      481 cgagcaacgc cgctgcgaac accgataaac cgctggtcaa actgatcagt cacagtcagc
      541 gacaccgaag aacaacggcc gatgaagacg caccctttag aatgacgctc cgaacacgcg
      601 ctcagtacag gaggtcggta caggaagccc ggccgcccgg acaaggcgcg attcctgcta
      661 tcccggtgcg gcctgccgcc aaacctgtgt atcctgacgc actgatagaa accgcagaaa
      721 ccacgaacga ccgcaggact gatgccgtat gccgctggac gacaccgcct gacatcgaac
      781 gcgaatcgga cgctgatcga acgttacagg cagcaccaac cgaacatcgc ccgacccggc
      841 gcccgcctgc taccccggta tcgaacagcg gccgcgccga acccgtccat gcaatcccaa
      901 tggagccgcc catgcaaccc gattcacccg ccggcaaacc cggtcaaagc ctggaaccct
      961 tgagcgacga gctcatcgat ttcgcgagcg aggtcttcga cgtagcccgc cgcggcgacg
     1021 ccgccatgct cgacaccttg ctgcacaaag gcctgccgcc gaacctgcgc aacgacaaag
     1081 gcgacacgct cgtcatgctt gccagctatc acggccatgc cgatgcggtg cgcgtgctgc
     1141 tcgaacacaa ggcggacccg gacctgcgca acgacaacgg ccagacgccc atcgcaggcg
     1201 cggcgttcaa gggttacaaa ccggtcatcg aggttttgct ggaacacggc gccgacgtgg
     1261 aaggggcatc gccggatgga cgcaccgcgt tgatgatcgc ggccatgttc aatcgcatgg
     1321 agatggtcga gttcctgatc gagaaaggcg cgaaccccga cgcgaaggac gcgaacggtt
     1381 tcaccgcacg cgacgccgct gcgaagatgg gcgcccctga caccgccgcg cggctcgcgc
     1441 aggcgaccga ggcgaagtcg cgtccgccgg gcgtttgagc gaagccagac gaaacgagcg
     1501 cagccgctgt acgcgccctt cggcgggccc tgatcggaca tttccccgga catcgccccc
     1561 taacccacgc gccgtcgata acccgtgcga cggcgcacga atttcgtgaa ggcagccctg
     1621 caacatggag ctcttgtgat gagtggcggt ttcccgcttc gagcgtacga atggcactgg
     1681 cgaacagtcg cccggacgct tgcaatcctc ctcgtcctgg cggtcatgtc gggatgcagc
     1741 ctgttcccgc atcaagcggc tgcgccgatc gtcgacctgt cgacgccgca accgcccgtc
     1801 gagccggaag tcgtggagcc ggagccggca tcgacgccgg tcgcgacgct tcccccggcc
     1861 gaaccgaaag ccccgcgccc cgcgcccaaa cggcgtgtgg tcgtgccgaa aaaaccgccg
     1921 ccgcccccgc cgccgcccgt cgaagaaaaa gcgccgccta cgccgccgcc gctgctcacc
     1981 acgcgcatca tgcagcacga gcaaatccgc ggtttgctcg acagcgagat ccagcgcccg
     2041 gatggcaagg tgatcggccg cgcggtggac atgtacgccg atgccaccgg caaaccgaag
     2101 atcatgatcg tgaacctcgc gggtttcctg ggtgtaggag accgcaaggt gaccttcccg
     2161 tggacagcat tccgcttcaa tccggccacc aaaaaagcgc caatcacgtt cgccataccg
     2221 acgcccggca gcaatggagc gtcgagcgcg gcgaaaacga aggctcagga cgcatcggcg
     2281 agaccgggat cggtcaacga cgttccgccg acgctcgctc aactcatcga ctccaatgtt
     2341 tcgcagaaaa gcggcgcacg gatgggtcgc gtcgtcgacg tgctgatcga tagcgaggcg
     2401 cagcctcagg cgctcgtgat cgatctctcc gattccctcg ccgccgacaa gcgtcaagtc
     2461 gcggcgaact ggcccgacct gcacgtggtc tcgcgcaaca aggtaatgca attgcaactg
     2521 gatttcaccg acgcacagat caaagccgcc ccaacttact cgcccgatca accgatcaag
     2581 atcatttcgc ccgtcgtccc gccaccggaa cctgctgagt cgccagagcc cgcttcggct
     2641 ccggctccgg ctgcagcttc cggcccggaa tccggtgcga aagcaggcgc ggcggccgtt
     2701 gcgcgcccct cgaaacaatg aggacgatct gaaatatggg aattgcacga agtctgcgcg
     2761 cgctcgattg gct
//
LOCUS       DATGBK010000266         2056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_119150, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000266 DATGBK010000000
VERSION     DATGBK010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119150"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VKJ77_03945"
     CDS             <1..364
                     /locus_tag="VKJ77_03945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013518255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44458.1"
                     /translation="RANKNEFAVSMIAWGNGTGEASYALVNILGTVDPKKGIGASNWG
                     RYSSPAVDHALDAATAEFDTTKREAILRQSVKVVSDDVGIIPLFHYENVWAAKKGLKV
                     TPAVSDRTTAMMVTRSGS"
     gene            372..1706
                     /locus_tag="VKJ77_03950"
     CDS             372..1706
                     /locus_tag="VKJ77_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013956583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase/BAAT C-terminal
                     domain-containing protein"
                     /protein_id="HMC44459.1"
                     /translation="MIDITVTPGDDLIDVARRIAVTGARAGTLLTLRTQTVRGAGTVW
                     TSRAVFRADDHGVIDLSRDAPVEGDYGGVSTMGIIWSQVPVEAGKREVFPADVSDALS
                     TCIEVIDERGQVLSATLLIQRLMAPGVQRHDMRVDGCVGTLFLPATPGPHPVVLVLNG
                     SGGGINEPRGALYASRGYAALALGYFKTPGLSDYISNTPLEYFRRALDWIARELQPAF
                     GFIAVSGQSRGGELALLLSATYPDRIKAVIGYVPGAVVHSAQNAADPATGREGPTWLL
                     DGKPLPHLWENNRTASWKPFDDGPPPHRHERAIRTALLDKDAVERARIHVENTDGPVL
                     LLSATDDGSWPSSDYSRMVVERLEREKHPYPVRHLDFDNAGHAIVFPYVPTTQLVYAH
                     PVSGRISTGGGEPAANARADESSWREVLAFLDAGVNSRASKSAGNSFRQEQP"
     gene            1703..>2056
                     /locus_tag="VKJ77_03955"
     CDS             1703..>2056
                     /locus_tag="VKJ77_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006227047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMD domain protein"
                     /protein_id="HMC44460.1"
                     /translation="MTDTYDLSTDIVDRIAGLTPGSPAYVTRHKRDKVAAATQRSYEA
                     LFDPALPDLSLSDRLLVALYACTLSKAPALATHYAERLASINADRAVIDQIAQDSIDA
                     QEPRLRAMLSFTRTLI"
BASE COUNT          400 a          642 c          625 g          389 t
ORIGIN      
        1 ccgcgcgaac aagaacgagt ttgcggtgag catgattgcc tggggtaacg gcacgggcga
       61 agcaagctat gcgctcgtca acattctcgg caccgttgat ccgaagaaag gtattggcgc
      121 gtcgaactgg ggccgctata gcagcccggc ggtagaccac gcgctcgacg ccgccacggc
      181 cgagttcgat accaccaaac gcgaagccat cctgcgtcag tcggtgaagg tggtgagcga
      241 cgacgtgggc atcattccgc tctttcacta cgagaacgtc tgggccgcga agaaaggcct
      301 gaaagtgaca ccggcggtca gcgaccggac gaccgcgatg atggttacgc gcagcggcag
      361 ttgaggccat catgatcgac atcacggtaa caccgggcga tgatctgatc gacgttgcgc
      421 gacgcatcgc cgtgaccggc gcgcgcgcgg gcacattgtt gacgcttcgc acgcagacgg
      481 tacgcggcgc aggtacggtt tggaccagcc gtgcggtctt ccgtgccgat gaccacggcg
      541 tcatcgatct ttctcgcgat gcgcccgtcg aaggcgacta cggcggtgta tcgactatgg
      601 gaatcatctg gtcgcaagtc cccgttgaag cgggcaaacg cgaagtgttt cccgctgatg
      661 tctctgacgc gttgtcgacc tgcattgagg tgatcgatga acgcggacag gtgctgagcg
      721 ccacgctgct gatacaacgc ctgatggcgc ccggtgtgca acgacacgac atgcgcgttg
      781 acggctgtgt cggcacgttg ttcctgcctg cgacgccggg gccccatcct gtcgtgctcg
      841 tgctgaacgg atcgggcggc ggcatcaacg aaccgcgcgg ggcgctttac gcatcgcgcg
      901 gatacgcggc cctcgcgctt ggttacttca agacaccagg gctgtccgac tacatctcca
      961 atacgccgct cgaatacttt cgccgcgcgc tcgactggat cgcacgcgag ttgcaaccgg
     1021 cgtttggctt tattgccgtg agcggacaat cgcgcggcgg cgaactcgcg ttgctgctca
     1081 gtgcaacgta tccggatcgc atcaaggcgg tgatcggtta tgtgcccggc gcagtcgttc
     1141 acagtgcgca aaatgccgcc gatccggcga caggtcgcga aggtccaacc tggctgctcg
     1201 atggcaagcc cctgccgcac ctatgggaaa acaaccgcac ggctagctgg aaacccttcg
     1261 acgatggccc gcctccgcat cgtcacgaac gcgccattcg aaccgcgtta ctcgataagg
     1321 acgcggtgga gcgggcgcgg attcacgtcg agaataccga tgggccggtg ctgctcctct
     1381 ccgctaccga cgacggttcg tggccctcct ccgattattc acgcatggtt gtggagcggc
     1441 tcgaacggga aaagcatccg tatccggtgc gccatctcga cttcgataac gccggccatg
     1501 cgatcgtttt cccgtacgtg ccgaccacgc aactcgtgta tgcgcatccc gtttccggac
     1561 gcatcagtac gggcggtggc gaacccgcag cgaacgcacg cgccgatgaa tcatcgtggc
     1621 gcgaagtgct ggctttcctc gacgcgggcg tcaattcccg cgcatcaaaa agcgctggca
     1681 attctttcag gcaggagcaa ccatgacaga cacctacgat ctcagcaccg atattgtcga
     1741 ccggattgcg ggcctcacgc ccggttcgcc ggcctacgtc acccggcata aacgcgacaa
     1801 ggtcgccgcc gcgacacagc gcagctacga agcgttattc gatccggcat taccggattt
     1861 gtccctgagc gatcgcttgc tggtggcctt gtatgcctgc acgttatcga aagcccctgc
     1921 attagcgact cattatgcgg aacggcttgc ttcgatcaat gcggaccgtg ccgtgatcga
     1981 ccagatcgca caagattcga tcgatgctca ggaacctcgc ttacgcgcaa tgctcagctt
     2041 cacgcgcacg ctgatc
//
LOCUS       DATGBK010000267         2632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_3048, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000267 DATGBK010000000
VERSION     DATGBK010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3048"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..1619
                     /gene="gspE"
                     /locus_tag="VKJ77_03960"
                     /pseudo
     CDS             108..1619
                     /gene="gspE"
                     /locus_tag="VKJ77_03960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050807.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
     gene            1626..>2632
                     /gene="gspF"
                     /locus_tag="VKJ77_03965"
     CDS             1626..>2632
                     /gene="gspF"
                     /locus_tag="VKJ77_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HMC44461.1"
                     /translation="MPAFRFEAIDQAGKSQKGVLDADSARAARSQLRTQGLTPLVVEA
                     AATRTRGKRKQRLSLGKRLSQREQAILTRQIASLLTAGLPLGETLSVLTDQSERDYVR
                     ELMAAIRGEVLGGHSFANALAEHPRDFPEIYRALVAAGEHTGKLGLVLSRLADYIEQR
                     NALKQKIVLAFTYPAIVTLIAFGIVTFLLSYVVPQVVNVFASTKQTLPFLTIAMMALS
                     GFVRNWWWAGLIGVALLSWIIKSLLARPGPRMAFDRWLLTAPLLGKLVRGYNTVRFAS
                     TLAILTAAGVPILRALQAAGETLSNRAMSANVEDAIIRVREGTSLSRALGNTKTFPPV
                     LV"
BASE COUNT          499 a          779 c          879 g          475 t
ORIGIN      
        1 ccgccgggcc agaatcaggg gcagcaaggt caggggcaat atcagggcca gccggcaaac
       61 gtgaacaatt acgctgtgcc gaataactcg gcgccggccg tacctctgaa caacaacgcg
      121 ggagcgcagc cgtgagcacg ctgaacgcgc ctgtcgcgaa cgttgctacg agcacgccgt
      181 cgccgctcgc ggcacggcta atcccgtacg cgtttgcgcg gaccggacag atcctggtgg
      241 cgcatcagca cgcggacagc atcgaagtgt ggatcagcga taaaaccagc gacgcggcac
      301 tcgccgaagt cgctcgtaac ttcggcgcgc tttccatcgt gcgtttgtcg gtggccgaac
      361 tgtcggctgc gatcaattcg gcctactcac gcaacgacgg cagcgcggcg caggtcgtgg
      421 gcgaagtgga aggcgaagtc gatctgtcgc ggctgatgca ggacattccc gaaatagagg
      481 atttgctcga atcggaagac gacgcgccga tcatccgcat gatcaacgcg ctgctgacgc
      541 aggcggcgcg cgaacaggca tcggatattc atatcgaacc gttcgagacg tcttcggtgg
      601 tgcgctttcg tgtcgatggc accttgcgcg acgtcgtgcg cccgaagaag gcgctgcacg
      661 gcgcgctgat ctcgcgtatc aagatcatgg cgcaactgga tatcgcggaa aaacggctgc
      721 cgcaggatgg ccgtattacg ctgcgcgtag gcggcaggcc ggtggacgtg cgtgtgtcca
      781 cgctgccgac cggtcatggc gaacgcgcgg tgctgcgtct gctggaaaaa gatgcgcagc
      841 ggctgaacct cgaaacgctg ggcatggcgc gcgacacgct ggttcatttc gacaagctca
      901 tcggccggcc gcacggcatc gtgctggtga ccggtccaac gggctctggt aaaacgacca
      961 cgctctatgc cgccatgtcg cgtctcgaaa ctgccaccac caacatcatg acggtggaag
     1021 atccgatcga atacgacctg ggcgggatcg gtcagacgca ggtgaacgag cgcattggca
     1081 tgaccttcgc gcgcgcgttg cgatccattc ttcggcagga cccggacatc atcatgatcg
     1141 gggaaatccg cgatctggaa acggcgcaga tcgcggtgca ggcgtcgttg accggtcacc
     1201 tcgtgctggc aacgctgcac acgaacgacg ctgcatccgc tgtcacgcgt cttaccgata
     1261 tgggcgtcga gccgtatctg ctcgcgtcgt cgttgctcgg cgtgctggcg cagcggctgg
     1321 tgcggcagtt gtgtccggta tgcaaggcag agagctcgga agacggacac attcattggc
     1381 gcgccgtcgg ctgcgacaag tgcggcaact cgggttatgc gggacgtcgt ggcgtgtacg
     1441 aattgctgct gcttgacgat cctattcgcg cgctgattca caggaatgca tcggacgccg
     1501 aaattttgac ggccggccgc gcgcaaggaa tgcgtactct gcgcgaggat gcaaaccggt
     1561 ggctcgcgac tggcgcaacg tcgctggaag aagtgttgcg tgtgacgggc ggagattaaa
     1621 catccatgcc ggcgtttcgt ttcgaggcaa tcgatcaggc gggcaagtcg cagaaaggcg
     1681 tactcgatgc cgacagcgct cgtgccgccc gcagccaatt gaggacgcag gggctgacgc
     1741 cgctggtggt cgaagcggcg gctacgcgca cgcggggaaa gcgcaaacag cggttatcgc
     1801 tggggaaacg cttgtcgcaa cgcgagcagg ccattctcac gcgacaaatc gccagcttgc
     1861 tgacagcggg tctgccgctc ggcgaaacgc tgtcggtgct gaccgatcaa tcggagcgcg
     1921 attacgttcg cgagctgatg gccgcgatcc gcggcgaagt gctcggcggc cattcgttcg
     1981 cgaacgcatt ggcggaacat ccgcgtgatt tccccgagat ttatcgcgcg ctggtggctg
     2041 ccggggaaca taccggcaag cttggactgg tgctgtcgcg gctcgcggac tacatcgagc
     2101 aacgcaatgc gctgaagcag aagatcgtgc tcgcgttcac ctatcccgcg attgtcacgt
     2161 tgatcgcgtt cgggatcgtc acgttcctgc tgagttacgt ggtgccgcaa gtggtgaacg
     2221 tgttcgcgag cacgaagcag acgctgccgt tcctcaccat tgcgatgatg gcgctctcag
     2281 gcttcgtgcg gaactggtgg tgggcagggc tgatcggcgt ggcgctgttg agctggatca
     2341 tcaagagcct gctcgcgcgg cccggtccgc gcatggcctt cgaccggtgg ctgctcaccg
     2401 caccgctgct gggcaaactc gtgcgcggct ataacaccgt gcgtttcgcc agcacgctcg
     2461 cgatcctgac agcggccggc gtgccgatcc tgcgggcgct gcaagcagcg ggcgaaaccc
     2521 tgagcaatcg cgcgatgagc gcgaacgttg aagacgcgat catccgtgtg cgtgaaggca
     2581 cgtcgctgtc gcgcgcgctc ggcaatacga agacgtttcc gccggtgctg gt
//
LOCUS       DATGBK010000268         1521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_303912, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000268 DATGBK010000000
VERSION     DATGBK010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303912"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..250)
                     /locus_tag="VKJ77_03970"
     CDS             complement(<1..250)
                     /locus_tag="VKJ77_03970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44462.1"
                     /translation="MTAGRGLRSAIVALRVVIGLPAMANVARTHRVVMLRVVRVVIVA
                     RVLRLAIVALRVAIALLAMLNVARSRRVVMLRVVRAAIV"
     gene            complement(477..>1521)
                     /locus_tag="VKJ77_03975"
     CDS             complement(477..>1521)
                     /locus_tag="VKJ77_03975"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350090.1"
                     /note="catalyzes the uridylylation or deuridylylation of
                     the PII nitrogen regulatory protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein"
                     /protein_id="HMC44463.1"
                     /translation="REHDVGADDSDLVVWLVEQHLTMSQVAQKQDTSDPEVIKQFASM
                     VKTERRLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRATRAVLGGAELHAHSELKS
                     RQEDALALLRLETVPENAEKVLWDKLDVGYFLRHDAADIAWQTRVLYKHVESEKPIVR
                     ARPSPIGAALQVLVYVKDRPDLFAGICAYFDKNGLSVLDARVTTIRHGYALDNFLVAH
                     PDHDGHYRDIANLVEQQLSTLLTAEGILPEPSRGRVSRLVRTFPITPRVDLRPDERGQ
                     YYILSVSANDRQGLLYSIARVLAQHRIGVHAARINTLGERVEDVFLLDGKTLSDNRTQ
                     IQVETELLRAIAA"
BASE COUNT          271 a          490 c          479 g          281 t
ORIGIN      
        1 ccacgatcgc tgctcggacc acgcggagca tcaccacgcg gcgtgaacgg gcgacgttca
       61 gcatcgccag aagggcgatc gccacgcgga gcgccacgat cgccaaacga aggacgcggg
      121 ccacgatcac tactcggacc acgcggagca tcaccacgcg gtgcgtacgg gcgacgttcg
      181 ccatcgccgg aaggccgatc accacgcgga gcgccacgat cgccgaacga aggccgcggc
      241 ccgcggtcac ccgcgccgcg agagtcgtcg ctacgcgcct tgaaaggttt ccgctcaccg
      301 gaacccgatg gccgtgcacc gcctgccggt ttatcgctac gcactggccg atcgccgctc
      361 gccatatcgg cgcgtggggg ctttttccgt ccggcagcgc tgccggtacg aacgggggaa
      421 cgtgccggcg atgccgggcg cgggtgcttc gctgtcagtt tgacgcgcat atattctcag
      481 gctgcgatcg cgcgcagcag ttcggtttcg acctggatct gtgtccggtt gtcggatagg
      541 gttttgccgt cgagcaggaa cacgtcttcc acgcgttcgc caagcgtatt gatccgcgcc
      601 gcgtggacgc cgatccggtg ctgggccaga acccgcgcga tcgaataaag gaggccctgc
      661 cggtcgttag ccgatacgga caggatgtaa tactgaccac gttcgtcggg acgtaagtcc
      721 acgcgcggcg tgatcggaaa agtgcgcaca agtcgcgaaa cacgtcccct cgacggttcc
      781 ggcaagatgc cctcggcggt cagcagcgta ctcaactgct gttcgacgag attcgcaatg
      841 tcgcgataat gcccgtcatg gtccggatgc gcgaccagaa aattgtctag cgcgtagccg
      901 tgccgtatcg tcgtgacccg tgcgtcgagc acggacaggc cgtttttgtc gaagtacgcg
      961 caaattccgg cgaacaggtc gggacggtcc ttcacataca ccagcacctg gagcgcggcg
     1021 ccaatcggcg acggccgcgc gcgcacgatc ggcttttcgc tctccacgtg tttataaagc
     1081 acgcgggtct gccaggcgat atcggcggcg tcgtggcgca ggaaatagcc gacatcgagc
     1141 ttgtcccaca atactttttc cgcgttttcg ggcacggttt ccaggcgcaa caacgcgagc
     1201 gcgtcttcct ggcgcgactt gagttccgag tgcgcgtgca gttcggcgcc gccgagcacg
     1261 gcgcgcgtgg cgcggtacaa atcctcgagc agtttgcctt tccaggcgtt ccagaccttg
     1321 gggctggtgc cgcggatatc ggcgacggtc agcagataca gcgcggtcaa ccggcgctcg
     1381 gtcttgacca tcgatgcaaa ttgcttgatg acttccggat cgctcgtatc ctgcttttgc
     1441 gccacctggc tcattgtcag atgctgttcc accagccaca cgaccaggtc gctgtcgtcc
     1501 gcgccaacat cgtgttcacg g
//
LOCUS       DATGBK010000269         1547 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_188488, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000269 DATGBK010000000
VERSION     DATGBK010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188488"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..341
                     /locus_tag="VKJ77_03980"
     CDS             <1..341
                     /locus_tag="VKJ77_03980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018420887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC44464.1"
                     /translation="AVSLSYEEAAATLGATRWQTLRHIMLPLAMPGLVSGALLVFAYN
                     ASAFAVPLLLGGRRVPMLAVLVHDEVSPLLNWPAASASGVVLMVATLAVMAISQSLVR
                     RTQRLKEPSA"
     gene            338..1207
                     /locus_tag="VKJ77_03985"
     CDS             338..1207
                     /locus_tag="VKJ77_03985"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018420886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44465.1"
                     /translation="MSTPINRFQSRARLLPATMPGRLGRPAALLAAIVLFLAALPILT
                     MILMSFSASDTLEFPPPGYSLQWYRAAWHSFVAPDASDVLSMGTALTTSLIVAVSTMI
                     IATLVSVPAAYALSRYRFRGKSAVEQLVALPLVYPLVMLGLSLLLVFNVLPVELGVFR
                     LIIAHVILALPFTVKNCAASAASIGPEFEEAACVMGASPRRAMFDVVLPLMRPGILAG
                     MLFAFIISFNEFTVTFFLYGINTMTLPVWLYSRTVSSLDPTVFSFAVFIVAIDFALIW
                     LLEKLIGDEGVAL"
     gene            1233..>1547
                     /locus_tag="VKJ77_03990"
     CDS             1233..>1547
                     /locus_tag="VKJ77_03990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44466.1"
                     /translation="MTHLTLQAVTKRFNAAYAVDHVDLSVPDGKLVCFLGPSGCGKTT
                     LLRMIAGLETPSSGSVTFAGRDITHLPANQRDFGMVFQSLALFPHMSVAENIAYPLRL
                     RKT"
BASE COUNT          230 a          507 c          475 g          335 t
ORIGIN      
        1 gagccgtgtc gctctcgtac gaggaagctg ctgccacgct cggcgcaacc cgctggcaga
       61 cgctgcgtca catcatgttg ccgctcgcga tgcccgggct tgtttcaggt gcactgctcg
      121 tgttcgctta caacgcaagc gcgttcgcgg tgccgctgct gctcggcggc cggcgcgtgc
      181 caatgcttgc cgtgctggtg catgacgagg tctcgccgct gttgaactgg ccggcggcct
      241 ccgcctccgg cgtggtgctg atggtcgcca cgctcgccgt catggcgatc tcgcagagcc
      301 tcgtgcggcg aacccagcgt ctcaaggagc cgtccgcatg agcactccaa tcaaccgatt
      361 ccaatcgcgc gcgcgtcttc ttcccgcgac catgccgggc cggctcggca ggcccgcggc
      421 gctgctcgcg gcaattgtgc tgttccttgc cgccctgccg atcctgacga tgatcctgat
      481 gtcgttcagt gcttcggaca cgctggaatt tccgccaccc ggctacagcc tgcagtggta
      541 tcgcgcggca tggcacagct ttgtcgcgcc cgacgcaagc gacgtgcttt cgatgggtac
      601 cgcgttgaca acaagcctga ttgtcgcggt gtcgacgatg atcatcgcga cgctggtctc
      661 ggtacctgcc gcgtacgcgt tgagccgcta ccgctttcga ggcaagtcgg ccgtcgagca
      721 gctcgttgcg ctgccgctcg tctatccgct ggtgatgctc gggctgtcgc tgctgttggt
      781 cttcaacgtg ctgcccgtgg aactcggcgt gttccggctc atcattgcgc acgtgattct
      841 cgcgctgccg ttcacggtga aaaactgcgc ggcgtcggcg gcatcgattg gcccggagtt
      901 cgaggaagcc gcctgcgtga tgggtgcgag cccgcgtcgc gcgatgttcg atgtggtgtt
      961 gccgctgatg cgccccggca tcctggccgg catgctgttc gcgttcatca tctcgttcaa
     1021 cgagttcacg gtgacgttct tcctgtacgg catcaacacg atgacactgc cggtgtggct
     1081 ctacagccgc acggtgtcgt cgctcgaccc gaccgtgttt tcgttcgcgg tctttatcgt
     1141 tgccatcgac ttcgcactga tatggctgct tgaaaaactg atcggcgacg aaggtgtcgc
     1201 gctctgagta cgcaagtatc caaggaaaca tcatgactca tctgacactc caggccgtga
     1261 ccaagcgctt caacgccgca tacgccgtcg accacgtcga cctgagcgtt ccggacggca
     1321 agctggtctg ctttctcggc ccgtccggct gtggcaagac gaccttgctg cgcatgatcg
     1381 cagggctcga gacaccgagc tccggcagcg tcactttcgc gggccgcgac atcactcact
     1441 tgccggccaa ccagcgcgac ttcgggatgg tgttccaatc gctggcgctg tttccgcaca
     1501 tgagcgtcgc cgaaaatatt gcgtacccgc tgcggctgcg caagacg
//
LOCUS       DATGBK010000270         1638 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_280987, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000270 DATGBK010000000
VERSION     DATGBK010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280987"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..309)
                     /locus_tag="VKJ77_03995"
     CDS             complement(<1..309)
                     /locus_tag="VKJ77_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012217741.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC44467.1"
                     /translation="MSVNFAIVFPYWRVLLGGLMLTVAFTLGCAIAGSIGGFVLSLLR
                     ISTNRWIKSAAAFYVEIFRGTPLLIQLFWMFFCLPVLFRISIPPALSVLLSLTMYMIA
                     I"
     gene            complement(320..991)
                     /locus_tag="VKJ77_04000"
     CDS             complement(320..991)
                     /locus_tag="VKJ77_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006404536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC44468.1"
                     /translation="MNYHFDFSFLDGKVGALLGGLKITLELTLVSNLLGLTFGFLLCL
                     TTLNRRAIVRWPARMFIEFFRCTPALLQIVWFFYCIPMMFDFFIGPIALGIIALGLNL
                     TAFNAEAYRAGVQAVPKEHLDACVALGLRPWQRTFYVVLPQALRSATPILMTNGIGAL
                     QQSALVAVVAVGDLMYVGNRLTTDAYRPLETYTLIAVIYFALSVPVSQLVRLIERKQD
                     FATER"
     gene            complement(1002..>1638)
                     /locus_tag="VKJ77_04005"
     CDS             complement(1002..>1638)
                     /locus_tag="VKJ77_04005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012365145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC44469.1"
                     /translation="GKSSLLRCMMGLEGIQGGEIRFQGRRYIQGGPGYAPTGIDRALQ
                     RQIGMVFQHYTLFPHLSVLANLILAPVKVGGMSRQEATERARAYLVRLGLESKLLAYP
                     SQLSGGQKQRVAIARALMLEPKLMLFDEVTSALDPEMVIEVQNVMLQLAEQKMAMIIV
                     THDMHFARDIATRVVFCANGSIVEQGPPGRLFRQPKEARTREFLEKVLHLD"
BASE COUNT          366 a          496 c          495 g          281 t
ORIGIN      
        1 gatcgcgatc atgtacatcg tcagcgacag caacaccgac agcgcgggtg gaatcgagat
       61 ccgaaacagg accggcaagc agaagaacat ccagaagagc tggatcagca gcggcgtgcc
      121 acggaagatc tcgacataga acgcggcggc gctcttgatc cagcggttcg tcgatatccg
      181 cagcagactt agcacgaagc cgccgatact gccggcaatc gcgcagccga gcgtgaaggc
      241 gacagtgagc atgagaccgc ccagcagcac gcgccagtac ggaaagacga tggcaaaatt
      301 gacggacatg ttggtttcct cagcgttctg tcgcgaagtc ttgcttgcgt tcgatcagcc
      361 gcacgagctg cgacaccggc acggacagtg caaagtagat gaccgcgatc agcgtatatg
      421 tctcgagcgg ccggtatgca tcggtcgtga ggcggttccc gacgtacatc aggtctccca
      481 ccgcgacgac agcaacgagc gcactttgct gaagcgcgcc gattccgttc gtcatgagga
      541 taggcgtcgc gctgcgcagt gcctgaggca gcaccacgta gaacgtgcgt tgccagggac
      601 gcaggccgag cgcgacgcaa gcgtcgagat gctcctttgg caccgcctgc acaccggcgc
      661 ggtaggcctc cgcattgaac gcggtcagat tcagacccag agcgatgatt cccaacgcga
      721 tcggtccgat gaaaaaatcg aacatcatag ggatgcagta gaagaaccag acaatctgca
      781 acagcgccgg cgtgcagcgg aagaactcaa tgaacatccg cgccggccag cgtacgatcg
      841 cccggcggtt gagcgtcgta aggcatagca gaaaaccgaa cgtcaggccg agcaggttcg
      901 acacgagcgt cagttccagg gtgatcttga gcccgcccag cagcgcgccc acttttccgt
      961 cgagaaaact gaaatcgaag tgatagttca cggtgccacc ctcaatcgag atgcaaaact
     1021 ttttccagga actcgcgggt gcgcgcttcc ttcggctggc gaaacagcct cccggggggg
     1081 ccctgctcaa caattgaacc gttcgcgcag aacaccacgc gggtggcgat atcgcgcgcg
     1141 aaatgcatgt cgtgcgtgac gatgatcatc gccatcttct gttcggcgag ctgcaacatc
     1201 acgttctgca cttcgatcac catctccgga tcgagtgcag aggtgacttc gtcgaacagc
     1261 atcagtttcg gttcgagcat gagcgcccgc gcgatcgcga cgcgctgctt ctggccgccg
     1321 gacagctggc tcgggtatgc gaggagcttg ctttcgagtc caagccgcac aagataggcg
     1381 cgtgcccgct ccgtggcttc ctgccgggac atcccaccta ccttcaccgg cgcaaggatc
     1441 aggttggcga gcaccgacag gtgcggaaat aatgtgtagt gctggaacac catgccgatc
     1501 tgccgttgca gcgcgcggtc gatgccggtc ggcgcgtagc cgggtccgcc ttgaatatag
     1561 cgtcgcccct gaaagcggat ctcgccaccc tggatgccct cgagacccat catgcatcgc
     1621 agcagagagc tcttgccg
//
LOCUS       DATGBK010000271         1948 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_26612, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000271 DATGBK010000000
VERSION     DATGBK010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1948
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26612"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..416
                     /locus_tag="VKJ77_04010"
     CDS             <1..416
                     /locus_tag="VKJ77_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44470.1"
                     /translation="LSDQPDRLAHANNGTPRPLTVDARLLRERPDLVARVLSRAIQAG
                     EWASAHPQDAIAYVARETRSAEHWAKHAYGEQLATQLQIGLERNAIAALDHFKRFLFK
                     HEFISQDFDIASWIDPVPLAAARALLAERHLTVPA"
     gene            496..>1948
                     /locus_tag="VKJ77_04015"
     CDS             496..>1948
                     /locus_tag="VKJ77_04015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44471.1"
                     /translation="MAASTALLIAGSPIGASAADVAQPVHGGTLNFVVDPEPPTLVDL
                     TNTAVPTLKVSTKVTEGLLTYDFALHPGPQLATSWSVSPDGLQYTFHLRHGVKWHDGQ
                     DFTSADVAYSIELLKRVHPRGKSTFANVTQIKTPDAFTAVLVLLKPSPFLIKAFSASE
                     SPIVPKHVYEGTDPFSNQNNNAPIGTGPFKFVKWVRGSYIEYDRNPDYWDKPKPYLDK
                     IIVKLIPDAPARSIAFETGSVDLGGNTPVPLSDIARLKQNPKLGIETRGYEFEAGVVR
                     VEFNLGNQYLKVPAVRQAIARAIDRNVIQKTIYYGYASVLSSPIIPESPYHDPTPTPY
                     PFDVTKANALLDAAGLARNSDGVRFTVIVDPLPISDIPQRTAAYLRSALAKIGIAVTI
                     RNQDLPSYLRRVYSDRDFDIAVNGMSNLFDPTVGVQRLYWTQSIRHGVPFTNASGYSN
                     PEVDRLLEQAAVEPDEAKRKQLFGQFQQIVERDL"
BASE COUNT          391 a          654 c          552 g          351 t
ORIGIN      
        1 atctgagcga ccagccggac cggctcgccc acgccaacaa cggcacgccg cggccgttga
       61 cggtcgacgc caggttgttg cgcgagcgcc ccgatctggt cgcccgggtg ctgtcgcgag
      121 cgattcaagc gggcgaatgg gcgagcgcac atccgcagga tgcaatcgct tatgtagcgc
      181 gcgagacccg ctcggccgaa cattgggcga agcacgccta cggtgagcaa ctggccacac
      241 aactgcagat tggtcttgag cggaacgcga tcgcggcgct cgatcatttc aagcgattcc
      301 tcttcaagca cgaattcatc tcccaggact tcgacatagc aagctggatc gaccccgtgc
      361 cgctcgccgc ggcccgtgcg ctgctggcgg agcgacacct cactgtcccg gcatgaaagc
      421 cagcatcccc attcacgcac caggatttcg ccgatgagat ttgcattgcc gccgcggcgg
      481 ttcatggttg cctgcatggc tgccagcacc gccctgctaa tcgcgggttc gcccattggc
      541 gcaagcgcgg ccgacgttgc ccagccggtt cacggcggca cgctcaactt cgtggtcgac
      601 cctgagccgc ccacccttgt cgacctcacc aacacggctg tgcctaccct caaggtcagt
      661 acgaaggtca ccgaaggcct gcttacctat gacttcgccc tgcaccccgg gccgcagctc
      721 gcgacgtcgt ggtcggtcag tccggacggc ctgcagtaca cgttccacct gcgccacggg
      781 gtgaagtggc acgacggaca ggacttcacg tcggccgacg tcgcttattc catcgaactg
      841 ctcaagcgtg tgcatccgcg cggcaagagc acctttgcga acgtgacgca gatcaagact
      901 cccgatgcat tcacggccgt gctcgtgctg ttgaagcctt cacccttcct catcaaggcg
      961 ttttcggcga gcgaatcgcc gatcgtgccc aaacatgtct atgaggggac cgacccgttc
     1021 tcgaaccaga acaacaacgc gcccattggc acggggccgt tcaagttcgt gaaatgggta
     1081 cgcggcagct acattgaata tgaccgcaat ccggactatt gggacaaacc gaagccttat
     1141 ctcgacaaaa taatcgttaa gctgattccg gacgcgccgg cacgctccat cgcgttcgag
     1201 accggctccg tcgacctggg cggcaatacg ccggtacccc tgtccgacat cgcgcggctc
     1261 aagcaaaacc caaagcttgg cattgaaaca cgcggctatg agttcgaggc gggcgtcgtg
     1321 cgcgtggagt tcaacctggg caatcagtac ctgaaagtgc ccgcggtacg ccaggcgatc
     1381 gcacgggcaa tcgaccgcaa tgtgatccag aagacgatct actacggcta tgccagtgtg
     1441 ctcagcagtc cgatcattcc cgaaagcccc taccacgacc cgacacccac cccctacccg
     1501 ttcgacgtga ccaaagccaa cgcactgctc gatgcggcag gcctcgcccg caacagcgac
     1561 ggtgtgcggt ttaccgtcat tgtcgatccg ctgccgatca gcgatatccc gcagcgcacc
     1621 gccgcttacc tgcgctcggc gctcgcgaag atcggcatcg cggtgactat tcgcaatcag
     1681 gacctgccgt cctacctcag gcgcgtgtat tcggaccgcg acttcgatat cgcggtcaac
     1741 ggcatgagca atctcttcga tccgaccgtc ggggtgcaac gtctttactg gacgcaaagc
     1801 atccgccacg gcgtgccgtt caccaatgcg tccggctaca gcaatccaga agttgaccgc
     1861 ttgctcgagc aggccgcggt cgagcccgac gaggctaaac gtaagcaact gttcgggcag
     1921 ttccagcaga tcgtcgagcg tgatttgc
//
LOCUS       DATGBK010000272         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_281047, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000272 DATGBK010000000
VERSION     DATGBK010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281047"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1145
                     /gene="oxlT"
                     /locus_tag="VKJ77_04020"
     CDS             <1..1145
                     /gene="oxlT"
                     /locus_tag="VKJ77_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="oxalate/formate MFS antiporter"
                     /protein_id="HMC44472.1"
                     /translation="MTKPLAAKLGIALPELQVTFSLLIILQTFCSPFQGKLIDRFGPR
                     LLISIGTVMSGLSWVLASQVHSAPMLYLTYGVVGGLGTGIVYVGVVGLMVRWFPDRRG
                     FAAGAVAAGYGMGAIVTTFPIASSLAARGVDATMLSFGIAFAVVGLLASQGLRVPPSH
                     DSVAASASQAVVPSLRPSQALKNPIFWLMFLMMTMMSTSGLMVTSQMATFAADFGVTK
                     VLVLGMAALPLALTIDRFTNGLTRPLFGWVSDRIGRENTMCFAFGLEGIAMALWLITR
                     DNAVLFVLLSGVVFFGWGEIFSLFPSTLTDTFGTRHATENYGWLYVSQGIGSIFGGPL
                     AALMHQHAGSWVPVFGTAITLDIVTAVLAIAVLKPMRGRFLAAQRA"
     gene            1172..1948
                     /locus_tag="VKJ77_04025"
     CDS             1172..1948
                     /locus_tag="VKJ77_04025"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44473.1"
                     /translation="MSVQLALRNIRKSFSNKQGTVDVLGGLTFDINERDFVSIIGPSG
                     CGKTTVFNVIAGLLEADSGDIVYRGQTVEGLRGKVGYMMQRDLLLPWRTVLQNVLIGP
                     ELSRMPIAQARETAMEYLNTYGLAGFENAYPRMLSGGMRQRVALIRTLINDPDIILLD
                     EPFSALDYQTRLYLEGVLMEAVETFHKTVVLVTHDIDEAVALSKRVVVLGGRPSQVKK
                     IYDIEIAARSPIGARSDPNFSGYFHALCGELDIQTEVGSA"
BASE COUNT          348 a          594 c          625 g          434 t
ORIGIN      
        1 tgatgaccaa gccgctcgcc gcgaaattag gcatcgcgtt gcctgaactg caagtgacgt
       61 tctcgctgct gatcatcctg cagacgttct gttcgccgtt ccagggcaag ctgatcgacc
      121 gcttcgggcc gcggcttttg atctcgatcg gaaccgtcat gtcggggctg agctgggtgc
      181 tggcatcgca ggtacacagc gcgcccatgc tctacctgac ctacggcgtg gtcggtggat
      241 tggggacggg cattgtctac gtcggcgtgg tggggttgat ggtgcgctgg tttcctgatc
      301 ggcgaggctt cgccgcgggc gcggtcgcag ccggttacgg catgggcgcg atcgtcacga
      361 cgttcccgat cgcttcgtcg ctggcggcgc gaggagtgga tgccactatg ttgagcttcg
      421 gcatcgcctt tgccgtggtc gggctgcttg cgtcgcaagg cttgcgcgtg ccgccttcgc
      481 acgattcggt cgcggcgagc gcctcgcaag ccgtggttcc gagcctgcgt ccgtcccagg
      541 cgctgaagaa cccgatcttc tggctgatgt tcttgatgat gaccatgatg tcgacctcgg
      601 gcctgatggt gacatcgcag atggcgacat tcgctgccga ttttggcgtg accaaggtgc
      661 tcgtgctcgg catggcggcg ctcccgctgg ccctgaccat cgaccggttc acgaacgggc
      721 tgacgcggcc attgttcggc tgggtatcgg accggatcgg ccgtgagaac accatgtgct
      781 tcgccttcgg acttgaaggc atcgcgatgg cgttatggct gatcacgcgc gataacgcag
      841 tcctgttcgt cttgctatcc ggcgtggtgt tcttcggctg gggcgaaatt ttttccctgt
      901 ttccatccac gcttaccgat accttcggca cgcgccacgc cacggaaaac tacggctggc
      961 tttatgtctc gcaaggcatc ggctcgattt tcggtggacc gctcgccgcg ctgatgcacc
     1021 agcatgcggg tagctgggtc cccgtgttcg gcacagccat tacgctcgac atagtcaccg
     1081 ccgtgctcgc gatcgccgtt ctcaaaccga tgcgtggccg cttcctcgcc gcgcagcgcg
     1141 catgatctga atccacactc aggaaaaacg catgtcagta cagcttgcat tgcgcaatat
     1201 ccgcaaatcg ttttcgaaca agcagggcac ggtggatgta ttgggaggcc tcacgttcga
     1261 tatcaacgaa cgcgatttcg tgagcatcat cggtccgtca ggctgcggga aaacgacggt
     1321 cttcaacgtg atcgccggtt tgctggaagc tgacagtggc gacattgtgt atcgcgggca
     1381 gacggtcgaa ggcctgcgag gcaaggtcgg ctacatgatg cagcgcgacc tgttgctgcc
     1441 gtggcgcacg gttttgcaga acgtgctgat tggcccggaa ctatcccgca tgccgattgc
     1501 gcaggcgcgg gaaacggcga tggaatatct caacacctat ggcctcgccg gattcgagaa
     1561 cgcctatccg cgcatgctct caggcggcat gcgccagcgg gtggcgttga tccgcacgct
     1621 cattaacgat ccggacatca ttctgctcga cgagccgttc tccgcgctcg actaccagac
     1681 gcggctctat ctggaaggcg tattgatgga agccgtggag accttccaca agaccgtggt
     1741 gctcgttaca catgatatag acgaagccgt ggccttgtcc aagcgcgtgg tcgtgctcgg
     1801 tggccgaccg tcgcaggtga agaagatcta cgacatcgag attgccgcgc gttcgccgat
     1861 cggtgcccgc agcgatccga atttctcggg ttacttccac gccctgtgcg gcgaactcga
     1921 catccagacc gaagtgggct cagcatgacg caatccgttt ccatcgcgca gccggcgcaa
     1981 aaggtacacg ccaaaaagtg g
//
LOCUS       DATGBK010000273         2000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_304000, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000273 DATGBK010000000
VERSION     DATGBK010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304000"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..960)
                     /locus_tag="VKJ77_04030"
     CDS             complement(<1..960)
                     /locus_tag="VKJ77_04030"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HMC44474.1"
                     /translation="MSDKSALCRKTLPLVEDHLLAPEWRDPAIGIVHLGIGNFHRAHE
                     AVYTEEAMLAAGGDWAICGVTLQGDVTKRDALMAQDGLYSVVERGPQGVKVSVIRALR
                     EVLALPHDRARLFDLLADPHVRIVSLTVTEKGYCRDTKTGDVDLSHPGIAHDLAHPGE
                     PGTVPGILVAALKTRRDAGIAPFTVLSCDNLSHNGAALRQVVCSHARALDEALATWVD
                     REVAFPSTMVDRIVPSTTDADRDAAAAALGFRDEAPVPCEPFRQWVVEDRFSAGRPAW
                     ERVGAQLVDDVMPFELAKLRMLNGTHSTLAYLSMLAGFATIDEA"
     gene            1055..>2000
                     /gene="manD"
                     /locus_tag="VKJ77_04035"
     CDS             1055..>2000
                     /gene="manD"
                     /locus_tag="VKJ77_04035"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008927 - mannonate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0016052 - carbohydrate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-mannonate dehydratase ManD"
                     /protein_id="HMC44475.1"
                     /translation="MKIVRADVIVSCPGRNFVTLKVVTDEGVYGIGDATLNGRELAVA
                     SYLKDHVCPLLIGRDPGRIEDIWQFLYKGAYWRRGPVTMTAIAAVDVALWDILGKVAN
                     LPLYKLLGGASRESVMVYGHATGRDIPEALDRYAEHVEEGYQAIRIQCGVPNMRSVYG
                     VSKGSGMYEPATKGAVEEQTWSSEKYLDFVPKLFEAVRDKFGFDTHLLHDVHHRLTPI
                     EAARLGKSVEPYRLFWMEDPTPAENQAGFRLIRQHTVTPIAVGEIFNSIWDCKQLIEE
                     QLIDYIRATLTHAGGITHLKRIADFASLYQVRTGCHGPS"
BASE COUNT          410 a          586 c          613 g          391 t
ORIGIN      
        1 tgcttcatca atggtcgcga acccagccag catcgacaag taagcgagtg tcgaatgtgt
       61 gccgttcagc atgcgcagct tggcgagctc gaacggcatc acgtcgtcca cgagttgcgc
      121 gcccacgcgt tcccatgcgg gtcgtccggc agagaagcgg tcttcgacca cccattgtcg
      181 aaacggttcg cacgggaccg gcgcttcgtc gcgaaacccg agcgcagcgg ccgcggcatc
      241 acgatcggcg tccgtggtcg aaggaacaat gcgatctacc attgttgacg ggaaggccac
      301 ttcgcggtcg acccacgttg ccaacgcttc atcgagcgcg cgagcgtgag agcagaccac
      361 ctggcgcaat gccgcgccgt tgtgcgagag gttgtcgcaa gagagcacgg tgaacggtgc
      421 gatgccggca tcgcgacgcg tcttcaaggc ggcgacgagg atgcccggca ccgtgccggg
      481 ctcgcccgga tgcgccagat catgtgcgat gccgggatgg ctgaggtcga cgtcgcccgt
      541 cttcgtatcg cggcaatagc ctttctccgt gaccgtcagc gagacgatcc gcacatgagg
      601 gtcggcgagc aggtcgaaca ggcgcgcgcg gtcatgcggc agcgcgagca cttcacgcag
      661 cgcgcgaatg acgctcactt tcacaccctg cggcccgcgt tccacgacgc tgtacaagcc
      721 atcctgcgcc atcaacgcat cgcgctttgt cacgtcgcct tgcagcgtga ctccacagat
      781 tgcccagtcg ccaccggcgg caagcatggc ctcttccgta taaaccgctt cgtgcgcccg
      841 atgaaagttt ccaatcccca aatgaacgat gccaatggcc ggatcgcgcc actcgggcgc
      901 cagcagatga tcctcgacta agggaagcgt tttgcggcaa agcgcggatt tatcggacat
      961 ttaaatagcc tggagcggga aaacccttgg ttgacgatta agtctacttg tatggtagca
     1021 tcaattcaat tgatcgcacc tcaaggaaat ccccatgaaa atcgtccgcg ccgatgtcat
     1081 cgtcagttgt ccgggacgca acttcgtcac gttgaaagtg gtgaccgacg aaggggttta
     1141 cggcattggc gacgccaccc tcaatggccg cgagctcgcg gtggcctctt atctgaagga
     1201 tcacgtgtgc ccgctgctga tcggtcgcga tccggggcgc attgaggaca tctggcaatt
     1261 tttatacaaa ggtgcgtact ggcgtcgcgg tccggtgacc atgaccgcca ttgcagcggt
     1321 tgacgtggcg ctgtgggaca tcctgggcaa ggtcgcgaat ctgcccttgt acaagctgct
     1381 cggcggcgcg tcgcgtgaga gcgtgatggt ctacgggcac gcgacagggc gtgacattcc
     1441 ggaagccctc gatcgctatg cggagcatgt ggaggagggg tatcaggcta tccgcattca
     1501 atgcggcgtg cccaacatgc gctcggtgta tggggtatcg aagggtagcg gcatgtatga
     1561 accggctacc aagggcgcgg tggaagagca aacatggtcg tcggaaaagt atctcgactt
     1621 cgtgccgaaa ctcttcgaag cggtgcgcga caagttcgga ttcgataccc atctgctgca
     1681 cgacgtacat caccgtctca cgcctataga agcggctcgg ttgggaaaat cggttgagcc
     1741 ttatcggttg ttctggatgg aagaccccac acccgctgag aatcaggccg gtttccgcct
     1801 gattcgccaa cacacggtga caccgatcgc ggtgggtgaa atattcaaca gcatctggga
     1861 ttgcaagcaa ctgattgaag agcagttgat cgactacatt cgcgccacgc tcacgcatgc
     1921 gggcggtatc acgcacctga agcgaattgc cgattttgca tcgctttacc aggttcgtac
     1981 gggttgccac ggcccctcgg
//
LOCUS       DATGBK010000274         1765 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_49884, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000274 DATGBK010000000
VERSION     DATGBK010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49884"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..1200
                     /locus_tag="VKJ77_04040"
     CDS             136..1200
                     /locus_tag="VKJ77_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC44476.1"
                     /translation="MRIAQIAPLHEAVPPKFYGGTERVVSYLTEALVEAGHDVTLFAS
                     GDSQTSAKLEAFWPQALRLDPTIRDTMAPHMLLLEEVRRRADEFDVLHFHIDYYPFSL
                     FSRQPVPFLTTMHGRLDLPELQPIFSTFNDAPVVSISDNQRQPLPQANWLSTVYHGLP
                     ENLLKPIPNVEPGYLAFLGRISPEKRVDRAIRIAGAAGMKIKIAAKIDNADRAYYEEQ
                     IKPLFALPHVEYIGEINEQQKTEFLGNAHALLFPIDWPEPFGLVMIEAMACGTPVIAF
                     NRGSVPEVIENGVSGFVVEDELSAIAAVKRLDTLPRAKVRQAFETRFSSKVMAARYVQ
                     TYEELLRAKRRTVLREVNAS"
     gene            1545..>1765
                     /locus_tag="VKJ77_04045"
     CDS             1545..>1765
                     /locus_tag="VKJ77_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011205172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44477.1"
                     /translation="MARSKQSSASPAPGAGTVFALRAIGLVLAARWLFSMSQMGYLSS
                     MRAMTSSPWACVTIVLLFLLLFLPGARARA"
BASE COUNT          328 a          524 c          533 g          380 t
ORIGIN      
        1 gattttttct cgtgctatcg gccataccgc tggagacacc agcaccgtgc cgagtccggg
       61 tagggcgatt cgcttgattt aacgaccgat gccaagcgca tcaattttgc ctgacattat
      121 taggagtttc cgaacatgcg aatcgctcaa atcgcgcctc ttcacgaagc cgttcccccc
      181 aagttctatg gcggcacgga gcgcgtggtg tcctatctga ccgaagcgct ggttgaggcc
      241 ggtcatgacg tcacgttgtt cgcgagcggt gattcgcaaa cgtcggcgaa gctcgaagcc
      301 ttctggccgc aggcgctgcg cctcgacccg accatccgcg acacgatggc gccgcacatg
      361 ctgctgctcg aagaagtccg ccgccgcgcc gacgagttcg atgttctgca ttttcacatc
      421 gactactatc cgttctcgct gttttcgcgc caaccggtgc cgttcctgac gaccatgcac
      481 ggccgtctcg acctgccgga attgcagccc attttcagca cgttcaacga cgcgccggtc
      541 gtgtcgatct ccgacaacca gcgtcagccg ttgccgcaag ccaactggct ctcgaccgtg
      601 tatcacggcc tgccggaaaa cctgctcaag ccgatcccca acgtggaacc gggctacctc
      661 gcgttcctcg gccgtatttc gccggaaaag cgtgtcgacc gggcgatccg cattgctggc
      721 gcagcgggca tgaagatcaa gatcgcggca aagatcgata acgccgatcg cgcgtattac
      781 gaagagcaga tcaagccgtt gttcgcgctg ccgcacgtgg aatacatcgg tgagatcaac
      841 gagcagcaga agactgaatt cctcggcaac gcgcacgcgc tgctgttccc gatcgactgg
      901 ccggagccgt ttggcctggt gatgatcgaa gccatggctt gcggtacgcc cgtgatcgcg
      961 ttcaaccgtg gatcagtgcc ggaagtgatt gaaaacggcg tgtcgggttt tgtcgtggaa
     1021 gacgaactga gcgcaatcgc cgctgtgaag cgcctcgaca cgttgccgcg cgccaaggtt
     1081 cgtcaggcgt tcgaaacgcg tttttcgtcg aaggtcatgg ctgcgcgtta tgttcaaacg
     1141 tacgaagaac tgctgcgcgc caagcgccgt accgttctgc gcgaagtcaa cgcgagctga
     1201 tttttacgct cgatagtgat cttgcggacg acgcctgatt gctgacctgc cgctaggctg
     1261 ctgattgagc gaaaacaacg ccccgtgcgc cgtcaggcgc gcggggcgtt gttgttttga
     1321 cacactgcgg gggcaagctt cacgcgttat cgttgggttg agcatgccgg gccgatgccg
     1381 ttttcgacat tctccctata atgtgcgggc ctcgtgaaat gcagtgcagc attgaaacga
     1441 acgtgtggat ggcgtggaag tctcttgaaa atcgcatcgc gcgacgggag gaacttaccg
     1501 cgcttaccgg gctaataagg acagttgtga acaggagcga agttttggcg agatcgaagc
     1561 agagtagcgc gagcccggca cccggcgctg gcactgtgtt cgcgctgcgg gcgatcggac
     1621 tcgtgctggc cgcgcgctgg ttgttctcga tgtcgcagat gggctacctc tcttcaatgc
     1681 gcgcgatgac ttcgtcgccg tgggcctgcg tcacgatcgt gcttctgttc ctgctgctgt
     1741 tccttcccgg cgctcgggcg cgcgc
//
LOCUS       DATGBK010000275         1952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_72742, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000275 DATGBK010000000
VERSION     DATGBK010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72742"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1916
                     /locus_tag="VKJ77_04050"
     CDS             <1..1916
                     /locus_tag="VKJ77_04050"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018312481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HMC44478.1"
                     /translation="AVLVAFPELGLPAYTCDDLFHQRALLDACEEALASIVAASKNLA
                     ITMIVGMPLRVDHTLFNCAVVVAGGQVQGVVPKSYLPNYGEFYEARQFSAAENASTDR
                     VTLLGTEVPFGSALLFEIANMPLFRFHVEICEDVWVPVPPSSFAALAGATVLVNLSAS
                     NVVVGKSSYRHQLVGQQSARCLSAYLYTSAGRGESTTDLAWDGQAVIYENGELLAESE
                     RFLDTSHLVFADVDLERLSRERMRQTTFGQSVRRHADEVSKFETVRFNLDLPINRALP
                     LERVVERFPYVPSDPKRRDERCNEVYNIQVQALAQRLSASGISKVVIGISGGLDSTHA
                     LLVCAKAMDRLKLPRTNILGVTMPGFATSDRTLLQARQLMEIVGCSASEIDIRPSCEQ
                     MLKDLGHPYASGKEEYDITFENVQAGERTNHLFRLANFKGAIVVGTGDLSELALGWCT
                     YGVGDHMSHYNVNASVPKTLITHLVRWVAETGQVGNSGSDVLINILNTDISPELVPGK
                     SNGNPEQKTESVIGPYELQDFNLYYTLRFGFAPTKVAFLAYTAWKDRDAGDWPEGAHV
                     ARNEYALPAIKHNLGIFLDRFFRTSQFKRSCVPNAPKVGSGGSLSPRGDWRAPSDSES
                     VVWMNDLKNIPVD"
BASE COUNT          375 a          587 c          612 g          378 t
ORIGIN      
        1 gcgcggtgct ggtcgcattc ccggaactcg ggcttccggc ttacacctgc gacgacctgt
       61 tccaccagcg ggccttgctc gatgcctgcg aagaggcgct cgcgtcgatc gtggcggcat
      121 cgaagaacct tgccatcacg atgatcgtgg gcatgccgct gcgcgttgac catacgctct
      181 tcaactgcgc cgtggtggtc gcgggaggac aggttcaggg cgtcgtgccg aagagctatc
      241 tgccgaacta cggcgagttc tacgaagcgc gccagttcag cgcggccgag aacgcgtcga
      301 cggatcgcgt cacgttgctg ggtaccgaag tgccgttcgg atcggcgctg ctgtttgaaa
      361 tcgccaacat gccgctgttc cgctttcacg tggaaatctg cgaagacgtc tgggtgccgg
      421 tgcccccttc gtcgttcgca gcgctcgcgg gcgcgacggt gttggtgaac ctgtcggcat
      481 cgaacgtggt ggtcggcaag tcgagttacc ggcatcaact ggtcggccag caatctgccc
      541 ggtgcctgtc ggcgtatttg tacacatcgg cgggaagggg cgagtccacc acggatctcg
      601 cctgggacgg gcaggcggtg atctacgaaa acggcgaact gctcgccgag tccgagcgct
      661 tcctggacac ctcccatctt gttttcgccg atgtcgacct cgaacggctc tcgcgtgaac
      721 gcatgcgcca gaccacgttc ggccagtcgg tgcgccgaca tgccgacgaa gtatcgaagt
      781 tcgaaacggt gcgcttcaat ctcgatctgc cgatcaaccg cgcattgcca ctggagcgcg
      841 tcgtggaacg gttcccctac gttccgtccg atccgaaacg ccgcgacgaa cgctgcaacg
      901 aggtctacaa catccaggtg caggcgctcg cgcaacggct ctcggctagc ggcatatcga
      961 aggtcgtgat cggcatttcg ggcggcctgg attcaaccca cgcgctgctt gtctgcgcca
     1021 aggccatgga ccgcctgaag ctgccgcgca cgaatattct cggcgtgacc atgcccggat
     1081 tcgccacgag cgaccggacg ctcctgcagg cgcgtcaact gatggagatc gtgggttgtt
     1141 cggcgagcga gatcgacatc cggccaagtt gcgagcagat gctgaaggat ctcggccatc
     1201 cgtatgcgtc gggcaaagag gaatacgaca tcacgttcga gaacgtgcag gcaggcgagc
     1261 gcacgaatca tctgttccgg ctcgcgaact tcaagggcgc aatcgtggtc ggcacgggcg
     1321 acctgagcga actcgcgctc ggctggtgca cgtacggcgt gggcgatcac atgtcgcact
     1381 acaacgtcaa cgccagcgtc ccgaaaacgc tgatcacgca tctggtccgg tgggtcgcgg
     1441 aaaccgggca agtcggcaac tcgggttcgg acgtcctgat caacatcctg aataccgaca
     1501 tcagcccgga gctcgttccc ggtaaatcaa acggcaatcc ggagcaaaag acggaaagcg
     1561 tcatcggacc gtacgaactg caggatttca acctgtatta cacgttgcgc tttggttttg
     1621 cgccaacgaa agtggcgttc cttgcataca cagcgtggaa ggaccgcgac gcgggcgatt
     1681 ggcccgaagg cgcgcatgtc gcacgaaatg agtacgcgtt gccggccatc aagcacaacc
     1741 tgggcatttt cctcgaccgg tttttccgga ccagccagtt caagcggtct tgcgtaccga
     1801 atgcgccgaa agtcgggtcc ggcggttctt tgtcccctcg cggcgactgg cgcgcgccga
     1861 gtgattcgga atcggtcgtc tggatgaacg atttgaagaa tattccggtg gattgaggcg
     1921 tttgcaccat atctgcgcgt aaatgcgccg at
//
LOCUS       DATGBK010000276         4071 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_72762, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000276 DATGBK010000000
VERSION     DATGBK010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4071
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72762"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..333)
                     /locus_tag="VKJ77_04055"
     CDS             complement(<1..333)
                     /locus_tag="VKJ77_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HMC44479.1"
                     /translation="MTLDTFSQKILRLLQLDARRSVQEISDQVGLSSTPCWRRIKDME
                     QSGVIQRYTALLDREKLGLHVCALAHIHLTRHTEGGVEQFEREITTCPEVTECYSTTG
                     EVDYILKIV"
     gene            complement(428..1078)
                     /locus_tag="VKJ77_04060"
     CDS             complement(428..1078)
                     /locus_tag="VKJ77_04060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease"
                     /protein_id="HMC44480.1"
                     /translation="MSTAIPEIYVSTDVEADGPIPGPHSMLSFASAAYTEHKELIGTF
                     SANLETLEGAAPHPVQAAWWKTQPEAWAACRTDLQQPLTALRAYVEWVEALPGKPVFV
                     AYPAGFDFTYMFWYMMRFAERCPFSWSALDIKTLAFALTDLPYRKAIKPRLPKHWFDE
                     LPHTHVALDDAVEQGALFCNMLAELRTQRTLLASLKAVGETPDDTDSEGQNAQSGR"
     gene            complement(1075..1719)
                     /locus_tag="VKJ77_04065"
     CDS             complement(1075..1719)
                     /locus_tag="VKJ77_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC44481.1"
                     /translation="MKVTLIPVTPFQQNCSIVVCETTGRAVVVDPGGDVERIIGAVAQ
                     LDVTVDKVLLTHGHLDHCGGAKALADHYGVEIHGPHTEDAFWIDQLPAQSKRFGFGDA
                     QAFTPDRWLQDGDSVQFGDETMEVYHCPGHTPGHVIFFSRVNRVALVGDVLFAGSIGR
                     TDFPRGNHSDLVRSVQEKLWPLGDDVTFVPGHGPTSTFGHERRTNPFVADRMSA"
     gene            2397..3023
                     /locus_tag="VKJ77_04070"
     CDS             2397..3023
                     /locus_tag="VKJ77_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006401362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HMC44482.1"
                     /translation="MNVRLTRRFGSLLVFAILTGCALPPSGSDQASVLKTGSQLTTAN
                     NAANQGLGTAPLAYDSRLNALPSSASNSSDTSSLANAKPITAGPDVSDFEQQGRASWY
                     GRGFHGRKTASGERYDMHALTAAHRTLPLASWVRVTNEANQKTVVVKINDRGPYARGR
                     VIDLSYAAAAVLGMRGAGVGKVKIEGLTPQEARAAARDQSLASINPVD"
     gene            complement(3099..4001)
                     /gene="rsmI"
                     /locus_tag="VKJ77_04075"
     CDS             complement(3099..4001)
                     /gene="rsmI"
                     /locus_tag="VKJ77_04075"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HMC44483.1"
                     /translation="MTPLSDLALGQQFPAGALYIVATPIGNVADITVRALHVLGLVDR
                     VAAEDTRNTSQLLSRYGISKPTIAVHEHNERSAAENVIAHLRNGERIACVSDAGTPGI
                     SDPGAKLVDAVREAGFAVIPLPGASALTTALSVAGAWVHTFSFIGFLATKPKQRDTQL
                     QSLLTHTPALVFYEAPHRIVETVQALERAFGGERQLLIARELTKLHESIHRCTLAEGP
                     TWLSGDANRQRGEFVLVVEGAPQKEAADDAHDVLLATLLEELSVSSAARLAATLTGAS
                     RNALYTRALAMDKARGEQGENEQE"
BASE COUNT          803 a         1202 c         1233 g          833 t
ORIGIN      
        1 gacaattttc aggatgtaat cgacctcgcc cgtggtgctg tagcactcgg tgacttccgg
       61 gcaggtggtg atctcgcgtt cgaattgctc gacaccgcct tctgtgtggc gcgtgagatg
      121 aatatgagca agcgcgcaga catgcaagcc aagcttttcg cgatcgagca acgcggtgta
      181 ccgctggatc acgcccgatt gctccatgtc cttgatacgc cgccagcacg gagtgcttga
      241 aagtccgacc tggtcggata tctcctgaac cgaacggcgg gcgtccagtt gaaggagtcg
      301 caggattttt tgtgaaaacg tgtcgagagt caactgcgcc tcctttcggt cgctaccaac
      361 tccaatagta gaggcggcag aaaggaagcg caatgtcaaa cgcctaccgt gagcaatatt
      421 gcctaactca acgcccagac tgcgcgtttt gtccttcgct gtcagtgtcg tccggcgttt
      481 cgccaaccgc ttttagtgac gccagcagcg tccgttgagt ccgcaattcg gccagcatgt
      541 tgcagaaaag agcaccttgt tcgacggcgt catcaagcgc gacgtgagtg tgcgggagtt
      601 catcgaacca gtgtttcggc aaacgcggtt tgatcgcctt ccggtatggc agatcggtca
      661 gcgcgaacgc gagcgtcttg atgtcgagcg ccgaccatga gaacggacag cgttcagcga
      721 aacgcatcat gtaccagaac atataagtga agtcgaaacc cgccggatag gcgacgaaca
      781 ccggcttgcc gggcaatgcc tcgacccatt ccacgtaggc gcgcagtgcc gtcaacggtt
      841 gctgcaggtc ggtccggcat gcggcccatg cctcgggctg ggttttccac caggcggcct
      901 gaaccggatg aggtgctgcg ccttccagcg tctcgagatt cgctgagaac gtgccgatca
      961 gttccttatg ttccgtgtag gccgccgacg caaaactcag catggagtgc ggtccgggga
     1021 taggcccatc agcttcaacg tccgtactga cgtaaatttc aggaatggcg gtgctcatgc
     1081 gctcatccgg tcggcgacaa acggattggt gcggcgttca tgcccaaacg tggacgtcgg
     1141 accgtggccg ggtacgaacg tgacgtcatc gcccagtggc cacagctttt cctgcacgga
     1201 gcgcacgagg tccgaatgat tgccacgcgg aaaatccgta cggccgatcg agcccgcgaa
     1261 cagcacgtcg cctaccaacg ccacgcgatt gacacggctg aagaagatca catggcccgg
     1321 tgtatgtccg gggcagtgat agacctccat ggtttcgtcg ccaaactgaa ccgagtcgcc
     1381 atcttgcagc caccggtcgg gtgtgaaggc ctgcgcgtcg ccgaagccga agcgtttgct
     1441 ttgagccggc aactggtcaa tccagaacgc gtcttcggtg tgtggtccgt ggatctccac
     1501 cccgtagtga tctgcgagcg cttttgctcc gccgcagtga tccagatgcc cgtgagtgag
     1561 cagcaccttg tcgacggtca catcgagttg tgcgactgcg ccgatgatcc gctcgacgtc
     1621 gccgcctgga tccacgacga ccgcacggcc cgttgtctcg cacacaacga tcgaacaatt
     1681 ttgctggaat ggtgtcacgg gaatgagggt gaccttcatg gctgggcaac cggtgcgtgt
     1741 aaaaacattc attgtaacgg gcgaaaaccg ccgtggcggc agcgcgccaa gcattagccg
     1801 atcggtcgaa atgcgcctaa aaaacaggca gaagctgcaa tttttacgcc aatggagaaa
     1861 atgagtaaca ttttgttcgt ccccgggagg tccacctatg cgtttgggta taatcggcct
     1921 agctgtgcat ggctcggcca tgccatcaat gggcaatgag aaacacgagt agcgcgtttt
     1981 tacaattgtc atcaagtacg caattcggag cagagatgct tcgaaatcgc aatcaagcat
     2041 cggtttcggc cgatgtgcac gtcttgtcca gccaggtgcg atgcacctgc caacggcctt
     2101 agctgccgtt acgctggatg gggcctacgc cgccgttcct gcgcagttga acgcgcaaga
     2161 atgtgtgatc cacgttcgat ggcggcatgt ggggtctggt caggctgccg gggacaggtt
     2221 gcgccagacg tgaaaactaa ccgggcattt gcggcgaggt acgccgcacc cgagcactgg
     2281 ctcgccgttc gacttttcga gcggcgcgta cctttgcgcg gaaagccttg agctgcctac
     2341 gcacgtccgc gttttgtcgg atggttgagg cggctttaac cgttgattac acgtctatga
     2401 atgtacgact aacccgacgt ttcgggagtc ttttggtctt tgcaatcctc acgggttgcg
     2461 ctttgccgcc aagcggcagc gatcaggcca gcgtgctgaa aaccggctcg cagctgacca
     2521 ccgccaacaa cgctgctaac cagggcctag gtacggcgcc gctcgcctat gactcccggc
     2581 tgaacgcgtt gccttcgtca gccagcaatt cgtctgatac ttcctcgctc gccaacgcga
     2641 agcccatcac tgccggaccc gatgtcagtg acttcgagca gcagggccgc gcctcttggt
     2701 atggccgcgg tttccacggt cgcaagacgg cgagcggcga acgctacgac atgcacgcgc
     2761 tcacggcagc gcatcgtacg ttaccgcttg cgtcgtgggt tcgtgtgacc aatgaggcga
     2821 atcagaagac agtggtcgtc aagatcaacg accgcggccc gtacgcgcgt ggtcgcgtga
     2881 ttgatctttc ctatgcggcc gctgcggtac tcggcatgcg tggcgcgggt gtcggaaagg
     2941 tgaagatcga aggcttgacg ccgcaggaag cgcgggcggc ggcgcgggat caatctctgg
     3001 cgtcaatcaa cccagtcgac tgatcatcgt caacttgttg cgtaaaaaaa cgggccgttt
     3061 cgacggcccg tttttattgc gcaacacgta tgcccacctc attcctgctc gttttcgccc
     3121 tgttctccgc gtgctttatc cattgccagc gcccttgtgt aaagcgcatt gcgcgatgcg
     3181 cccgtcagcg ttgccgccag tcttgcagcg ctgctcaccg acaactcctc cagcaacgtc
     3241 gcgagcaaca catcatgagc gtcgtccgcc gcctccttct gcggcgcgcc ttccactaca
     3301 agaacgaact cgccgcgttg ccggtttgca tcgccggata gccacgttgg cccttcggcc
     3361 agggtgcatc gatggatgct ctcatgtaac ttggtcagct cacgagcaat cagcaattgc
     3421 cgctcgccac cgaacgcgcg ctcgagcgcc tgcaccgttt ccacaatcct gtgcggcgct
     3481 tcgtagaaca caagtgccgg cgtgtgggtg agtagcgact gcaattgcgt gtcgcgctgc
     3541 ttcggtttgg tggcaagaaa gccgatgaat gaaaacgtgt gaacccatgc gccggctacg
     3601 ctgagcgcgg tggtgagggc gcttgcgccc ggcaaaggaa taacggcaaa gcccgcttcg
     3661 cgcacggcgt cgaccagttt cgcgccgggg tcggaaatac ccggggtgcc tgcgtcggac
     3721 acgcacgcga tgcgctcgcc attgcgcaga tgcgcgatca cgttctcggc cgcgctgcgc
     3781 tcgttgtgct cgtgcaccgc gatggtcggc ttcgaaatgc cgtagcgcga cagcagttgc
     3841 gatgtgttcc gcgtgtcctc ggccgccacc cggtcgacaa gcccgagcac atgcagcgcg
     3901 cgcaccgtga tgtccgcgac attgccgatc ggcgtcgcga ctatatacag cgcaccagcc
     3961 ggaaactgct ggccaagggc taagtcggag agtggagtca tgagggcggg tggcatgcgg
     4021 aggacgtcat tgtgccacgc gatgagggac aactttttgg ggaacggggt g
//
LOCUS       DATGBK010000277         1594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_26680, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000277 DATGBK010000000
VERSION     DATGBK010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26680"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(121..399)
                     /locus_tag="VKJ77_04080"
     CDS             complement(121..399)
                     /locus_tag="VKJ77_04080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HMC44484.1"
                     /translation="MKQPNDVFNDFQAKMSELLKNSPAKDIEKNMKAMLSQGFSKLDL
                     VTRDEFDTQTQVLVRTRARLEELEQRVAQLEAKLGGGPTASGSSSAQD"
     gene            864..1202
                     /locus_tag="VKJ77_04085"
     CDS             864..1202
                     /locus_tag="VKJ77_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HMC44485.1"
                     /translation="MKLITAIIKPFKLDEAREALSAIGVSGITVTEVKGFGRQKGHTE
                     LYRGAEYVVDFLPKVKIEAAVSDDIVDQAIEAVERAARTGKIGDGKIFVTPIEQVIRI
                     RTGETGADAL"
     gene            1235..>1594
                     /locus_tag="VKJ77_04090"
     CDS             1235..>1594
                     /locus_tag="VKJ77_04090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia channel protein"
                     /protein_id="HMC44486.1"
                     /translation="MRKLLMSLLMAGSLLGVSAGTVMAQDASAPAAASAAASDTTAAA
                     PASAPDTASAAPAASAAAPASGASDAAAAPAAPTEPFSVDSSKINSGDTAWMLTSTAL
                     VLFMTIPGLALFYAGMVR"
BASE COUNT          324 a          489 c          460 g          321 t
ORIGIN      
        1 accacggcaa gcgacatgat tttttccccg ctgccgttgc ctcgctaagt agaggcaacg
       61 gtttaatgac ccaacatcac ggctcgctta gccgatgaca cgctttagaa catctgcact
      121 tcagtcctgg gcactggaag aaccagacgc cgtcggtccg ccgcccagct tcgcttccag
      181 ttgcgcgacg cgttgttcca gttcctcgag ccgggcgcgt gtacgcacga gcacttgtgt
      241 ctgggtatca aattcgtcgc gtgtcaccag gtccagcttc gaaaaaccct gcgacagcat
      301 ggctttcata ttcttttcaa tgtccttggc cggcgaattc ttcagcagtt cgctcatctt
      361 ggcctggaaa tcattgaata cgtcgttggg ttgtttcata cgattttcct cttgcgcacc
      421 ataaaagtgc attcattgtt agctcagtgc tccggcaaac cggatgatcc attttggtgc
      481 gtactcttgc gctccacgag aacttcgagg cgcctgcgcg gcaaaatttt gcgctttgga
      541 acacgtccgt ttgcctggac cttgcgagca ctctagcaac gatccacggt gcgcgccagc
      601 gaacgcaagc ggcgctggcc atccggtcta ccccacgcat tacatgcctt gcgagccaga
      661 cagcaggccg cggacgcgcg catggcatac gagttgcata tgtgccccgg gccttgtccg
      721 tgcgcgcttt tccgggcggt tgacaatgcg gcgtggcgca tcagacgccg ctcgcgacgg
      781 acatgaggca gcgagggatc aggcatggga ccagattaag gcgcgatagc gccaactctg
      841 ttcgacacca cagcgaggga taaatgaagc tcattaccgc aatcatcaag ccgttcaagc
      901 tcgacgaagc acgcgaagcg ttgtcggcta ttggcgtctc gggcatcacc gtgaccgagg
      961 taaaaggctt cggccgccag aagggccaca cggagctgta tcgcggcgcc gagtacgtgg
     1021 tcgatttcct gccgaaagtg aagatcgaag cggcggtctc tgacgacatc gtcgaccagg
     1081 cgatcgaagc ggtcgagcgt gcggcccgca caggcaagat cggcgacggc aagatcttcg
     1141 tcaccccgat tgaacaagtc attcgtattc gcaccggtga gaccggcgcg gacgctctct
     1201 aagaaaagaa acggcgataa gaggaaacag aagaatgcgt aaattattga tgtccttgtt
     1261 gatggcgggg tcgctgcttg gagtcagcgc cggcaccgtg atggcgcagg atgcatccgc
     1321 gccagcggct gcttccgccg cggcttcaga cacaaccgca gcagcacctg caagcgcacc
     1381 cgatacagcc agcgcggcac cggcagcatc ggcggccgct ccggcttccg gcgcatccga
     1441 tgccgcagcg gcgcccgccg caccgacgga accgttctct gttgattcat cgaagatcaa
     1501 ttccggcgac accgcctgga tgctgacgtc gaccgccctc gtgctgttca tgacgatccc
     1561 gggcctcgcg ctcttctacg cgggcatggt ccgc
//
LOCUS       DATGBK010000278         3304 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_3167, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000278 DATGBK010000000
VERSION     DATGBK010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3167"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..571)
                     /locus_tag="VKJ77_04095"
     CDS             complement(<1..571)
                     /locus_tag="VKJ77_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006751127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44487.1"
                     /translation="MAHALHDGYTDMIYALLPVWQAEFGLSFGALAILRGIYAGAMAT
                     LQLPAGHLARTLGTRTTLGFGTLLAALGYAVAGMSGTLLGLCIALAISGSGSSTQHPL
                     ASGAVSRVYGRNARGPLSIYNFSGDLGKSVLPAAISLLITIMPWRHALWAVSTVGVVV
                     AAVIALFLPSVPRDESSIEEASSPNSTGSR"
     gene            806..1795
                     /locus_tag="VKJ77_04100"
     CDS             806..1795
                     /locus_tag="VKJ77_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44488.1"
                     /translation="MGTDKRTDKDAEKLPPLNALRHFEAVARLGSFAAAASDLHVTHW
                     AVGKQIRLLEDWFGVPLFERRPRGVVPTDEGAALLNDVKGAFARLSSSVTRLRHESTT
                     RRITGVVRVNALASFALCWLIPRLADFRASYPDIDVRLSTTSRKLRYVGGAFDVGVRS
                     GSEDAAGLISTTLMPDLRLPACSPSVLLSHPIRTVTDLRNHTLLHSTSTRTAWSDWLR
                     QAGAPGLQGARHLDFDHVFLQLGAAAEGLGVTLASLPLIEREIATGRLVCPISEPAWR
                     GPDYTLVVNTDRADDDAVIAFKKWIMATAAQNPVEPARRKPALSKARVSAKGG"
     gene            complement(1805..3052)
                     /locus_tag="VKJ77_04105"
     CDS             complement(1805..3052)
                     /locus_tag="VKJ77_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013689638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44489.1"
                     /translation="MKATRPLEALNFFIADVQAGIGPFLGVFLQARGWGADAIGTVMS
                     IGGIAGMLATTPAGALVDATRSKRAVVVVAGSMTVLAALLPWIAHGYWTVAASQVATA
                     ITGAAIGPALAGITLGIVRQRGFDRQFGRNQVANHAGNVVGAALSGWLGWRFGFGAVF
                     ALSAAFGVLSVTAALLIPASAIDHDHARGLERTGSSEPQSGLRILLGSRPLLLLALAL
                     GLFHLGNAAMLPLYGLAVVAAHQGDPSAFTAATIVVAQLVMVIASFFANRLIQWRGYW
                     WVILITFVALPVRGLIAASVIHAWGVWPVQTLDGIGAGLQSVVVPALVVRLLNGTGRV
                     NAGQGAVMTVQAAGAALSPALGGMLAHHFGFSTAFIALGALSTGSLALWVGFGSSLRH
                     ACRVSSHSGLQAAMGESGSGPVV"
     gene            complement(3055..>3304)
                     /locus_tag="VKJ77_04110"
     CDS             complement(3055..>3304)
                     /locus_tag="VKJ77_04110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44490.1"
                     /translation="LSSEWTSRVQKSDDGRRGRGAGPSPASFAPMACGLQKVALRRAC
                     RQPREAVDTMLTWIHLDDLHVTALFDSQRGPNKNGRRW"
BASE COUNT          668 a         1028 c         1053 g          555 t
ORIGIN      
        1 atcgcgaacc ggtgctgttt gggctcgacg cttcttcgat ggaagactcg tccctcggca
       61 ccgatgggag aaaaagtgca atcactgccg cgactacaac gccaacggtc gacacggccc
      121 aaagcgcgtg gcgccacggc atgatggtaa tcagaagcga gatagccgcc ggaagcacag
      181 attttccgag gtcgcctgaa aaattgtaga tgctgagcgg ccctcgagcg ttgcgtccat
      241 acacgcgcga aactgctcct gaagccaggg gatgttgcgt gcttgagccg cttcccgaga
      301 tggcgagcgc gatgcataag cccagcaggg ttccagacat gcctgcgacg gcatagccca
      361 gcgcggccag aagcgtgccg aatccaagcg tcgtgcgggt gcccaatgtg cgtgcgaggt
      421 gtccagcggg caattgcagc gtcgccatcg cgcccgcata gatgccgcgc aaaatagcca
      481 gggcaccgaa actaagtccg aattccgcct gccaaacagg cagcaaggcg tagatcatgt
      541 cggtgtaccc gtcgtgcagc gcgtgcgcca tgcacgagag ccataacacg cgcgtgcgtg
      601 aaacggaggt cgactgaccg ggtccgccgg ctacgcctgt cgctggggag gagaaagaga
      661 aaagtctcat ggttcaaccg aatcgcggaa gcgggggcct tgggatcggc tcgagcgttt
      721 gttacaggag actcatagtc taggttcgtc cagaacgtgc cacaactgac gtaaaattga
      781 gtcagacggg aggaaaagtc accctatggg cacagacaaa cgcacggata aagacgcgga
      841 aaaattgccg ccattaaatg cgttgcggca ctttgaggcg gtcgcccgcc tggggagttt
      901 cgcggctgcg gcgagcgatc tgcacgtcac gcactgggcg gtcggcaaac agattcgatt
      961 gctggaagac tggttcggcg ttccgctctt tgagcggcgc ccacgcggcg tcgttcctac
     1021 tgacgaaggc gctgccctgc tcaatgacgt caaaggtgca tttgcgcgcc tgagcagctc
     1081 ggtcacccgc ctgcgccacg aatccactac gcgtcgtata acgggtgtcg tgcgcgtcaa
     1141 tgcgctggcg agcttcgctt tgtgctggct aataccgcgc ctcgcagatt tccgggcgag
     1201 ctacccggac attgatgtgc ggctctcgac aacctcacgc aagttgcgct atgtcggtgg
     1261 tgcatttgac gtcggcgtgc gttcgggatc cgaggacgca gcaggcctca tttcaactac
     1321 gctgatgccc gacttgcgtt tgcccgcttg tagtccatcg gtgctgctaa gccacccgat
     1381 caggacggtc actgatttgc gaaatcacac gctccttcac tccacgagca ctcgcacggc
     1441 ctggtccgat tggttacggc aggccggcgc gcccggcctg cagggtgccc gccatctcga
     1501 cttcgatcat gtttttctcc aactaggcgc tgctgctgaa ggccttggcg tgacgttggc
     1561 gtcgctgccg ctcattgaac gcgagatcgc aacagggcgt ctcgtatgtc caatatcaga
     1621 gccggcgtgg cgcggccccg attacacgtt ggtcgtgaac accgatcgcg cggacgatga
     1681 cgcagtcatt gcattcaaaa agtggatcat ggcgacagcg gcgcaaaatc cggtagagcc
     1741 ggctcgccgc aaaccagcgc tatcaaaagc tcgggtttca gcaaagggag gctaacgttt
     1801 atcgttatac gacaggtccc gaaccggatt cacccatggc cgcttgtaag ccggaatggg
     1861 aggacacgcg gcaggcgtgc cggaggctcg agccgaagcc aacccatagc gcgagggaac
     1921 ccgtcgagag agcgcccaac gcgatgaagg cggttgaaaa gccgaagtga tgcgcgagca
     1981 tcccgcccaa tgcgggactg agcgcggcgc ccgccgcctg gaccgtcatg accgctccct
     2041 ggccggcgtt cacacggccc gtgccgttga gcagacgtac cacgagcgcc ggcaccacga
     2101 cgctttgcaa ccccgcgccg atgccatcga gcgtctggac tggccatact ccccacgcgt
     2161 ggatcacgct tgcggcaatg agcccacgca cgggcagcgc cacgaacgtg atgaggatca
     2221 cccaccagta accgcgccat tggatcagcc ggttagcgaa gaatgaggcg atcaccatca
     2281 cgagttgcgc cacgacgatg gtcgccgcgg tgaatgcgct tgggtcgccc tggtgcgcgg
     2341 cgacgacggc gagcccgtag agcggcagca tcgccgcatt gccgaggtgg aagagtccga
     2401 gagccagcgc gagcagcagg agcggccggg agccgagcaa gatgcgcagg ccgctctgcg
     2461 gttccgatga ccccgtgcgt tcgagtccgc gcgcgtggtc atggtcgatg gcgctggccg
     2521 gaatcaacag cgccgcagtc accgatagca ctccgaacgc cgcgctcaac gcgaataccg
     2581 cgccaaagcc aaagcgccag ccaagccatc ccgacagggc tgcccccacg acattgcccg
     2641 catgattggc cacctgattg cggccgaact gccggtcgaa tccgcgctga cgcacgatgc
     2701 cgagcgtaat gccggcgagc gcgggaccga ttgcggcgcc ggtgatagcc gtggccactt
     2761 gcgacgctgc cacggtccag taaccgtgtg cgatccatgg aagcaaggcc gcgagtacgg
     2821 tcatggagcc ggccacgacg accactgccc gcttgctacg ggtggcatcg acgagtgcgc
     2881 cggcgggcgt cgtcgcgagc atgcccgcga tcccgccaat gctcatcacg gtgccgatag
     2941 cgtccgcgcc ccagccgcgt gcctggagga acacgccgag aaacggaccg atgccggcct
     3001 gcacgtcggc gataaagaag ttgagcgctt cgagcgggcg agtggctttc acgttcacca
     3061 cctgcgaccg ttcttgttcg gcccgcgttg cgagtcgaac agggcggtga catgcaggtc
     3121 atcgagatga atccaggtca acatggtgtc gacggcctca cgaggttgcc ggcaagcgcg
     3181 gcggagcgct accttctgca agccacatgc catcggcgca aagcttgcgg gagaaggacc
     3241 ggcgccgcgt ccgcgtctgc cgtcgtcgct tttctggaca cgtgatgtcc actcactgga
     3301 cagt
//
LOCUS       DATGBK010000279         6415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_49917, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000279 DATGBK010000000
VERSION     DATGBK010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6415
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49917"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..1529
                     /locus_tag="VKJ77_04115"
     CDS             126..1529
                     /locus_tag="VKJ77_04115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011351135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HMC44491.1"
                     /translation="MASSATFSAASAAEPANPDATPTDAPEADLNIQAQPAGQWTGVW
                     GRSTLLGDMGGIRPFLGQYGVTLQATEVSEYLDNARGGLKTGGTYDGLTTVTLGLDTQ
                     KAFGLEGGTFNASALQIHGRNLSEFNLGTLNTASGIEAQDTTRLWELWYQQSFLNKRV
                     DVKVGQQSIDQEFMVSSYAATFVNTMFGWPGLPSYDMPSGGPAYPLSGLGVRVRGQIT
                     PSLTALAGVFDADPLGNNPNNLSGTNFNLHNGAMYIGELQYSINQPSDGEMVGVPQTG
                     LPGTYKIGFWYNNERFADQSTDNTGLSLADPASSGTPQNHNGNYSFYAVADQMIWRPN
                     PDEPRSIGVFARVMGAPGDRNLVSFSANAGIVMKAPFAGRDNDSVGIGLAYIKVGNHV
                     HDLDIAAAAASGGPYGIRTQETAVEATYQYQVNPWWVMQGDLQYTFNAGAGQNPNDPT
                     QPLRNTLVVGVRTTITF"
     gene            1568..2719
                     /locus_tag="VKJ77_04120"
     CDS             1568..2719
                     /locus_tag="VKJ77_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010121792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44492.1"
                     /translation="MKQLFKSRALSATLTAIASAAVLAGGVVSSIAHAAPIGFLETLH
                     KHTTLINTVPSNGDQNPYAIVVAPVSSGTVKQGDVLVGNFNNAANLQGTGSTIINYHP
                     DTKQMTVFATVPRDLKDCPGGIGLSTAMTMLKSGWVIIGSTPSNDGTTGTKGAGCLIV
                     LDNQGKVASTIASPNINDPWGNMAVVDNGDHATLFVSNAGFGVGGAQGNPPVFKQATI
                     LRLDLDIPQGKAPVVKQETVIASGFGAQADKGVFLVGPTGLALSQDQKLLYASDAIGN
                     RVTEIDEPMTRDTSAGVGRELTADGFLHRPLAMVTAPNGHLLVTNALNGQVVEIDPST
                     GKQLYARWIDTDKAQSPPGNGDLFGIAMTPEGDGFYYVQDDVNTLVLAK"
     gene            2783..4054
                     /gene="efeB"
                     /locus_tag="VKJ77_04125"
     CDS             2783..4054
                     /gene="efeB"
                     /locus_tag="VKJ77_04125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0033212 - iron import into cell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter
                     deferrochelatase/peroxidase subunit"
                     /protein_id="HMC44493.1"
                     /translation="MANDQDPPRRRFLKAGVAAGAALGAGSVAHAATKAQFKQPIDPM
                     LVVEPFFGEHQAGIVTPQQGHTYVASLDLTTDKREDVIGLLKEWTDAAARMSRGDTAK
                     PLPADDKAAPDSGDILGLGAAGLTITFGFGPGLFTHEGKDRYGLEKRRPAALVDLPRF
                     NGDQLLPQKTGGDILIQACANDAQVAFHAVRQLARMGYGIVAMRWAQAGFLSGPRGQT
                     PRNLMGFKDGTNNPSTAKPALMNQFVWANASDAPWMNGGTYTVVRRIRITLEHWDTME
                     RGFQEQVMGREKYSGAPIGKKNEFDALDLDAADKDGNQVIPENSHVRLSNQATNNGAQ
                     ILRRSYSYSDGTDFYIERWPPWRQETEYDAGLIFVAHQSDPRTGFVPINERLAKFDMM
                     NQFTTHVGSAVFACPPGVRPGSFIGAGLFET"
     gene            4125..5150
                     /locus_tag="VKJ77_04130"
     CDS             4125..5150
                     /locus_tag="VKJ77_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011351132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter substrate-binding protein"
                     /protein_id="HMC44494.1"
                     /translation="MNTTRSLPVLRTLCGIAVLAAAAALPLNSEAATLTLYNAQHEQV
                     VAALAKDFEKQSGVSVKVRNGEGPAMAAQLVAEGSASPADVYFTENSPELMLLDEKGL
                     LAKTDASTLSTIPSRYNSPQGDWVGVLARENVLVYNTKKIDAAQLPASLMDLAKPEWK
                     GKVGIAPSDGDFLPVVSAVIAMKGEAQALDWLKGLKKNSQIFDDDEGVVAAVNRGGVA
                     TGVVNNYYWARLHVQLGDSATRSAIYHFGNGDVGALVNVSGAAVLKSSKNQKEAQQFL
                     AYLVSERAQDLMAKGKIAFEYPLHAGVSPDPLLKPFDQLSPPSLTVEQLGDDSKAAKL
                     MRQAGLL"
     gene            5163..>6415
                     /locus_tag="VKJ77_04135"
     CDS             5163..>6415
                     /locus_tag="VKJ77_04135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HMC44495.1"
                     /translation="MSDVVKAVGVSALPEPRSRKRAPRGLLVAAGLCALLVLMPLAFT
                     VYRAVTFGWDDAIELIFRPLVGELLINTLSITVSATLVSAVVGTAAAWFIERTRLPGR
                     RLWAALTVAPLAMPAFITSYAWVSLSLDLQDFAGALLVISTAYFPLVYLPVAAALRGM
                     DPALEESARSLGCGRVGVFVRVVLPQLRPALLGGMLLVALGVLSEFGAFTLLRFRTFT
                     TQIYAEYRTSFDSSGASVFACILIAMCLFCLALEMRVRGGARYERVDRGVRRAALRYE
                     LGVWRWAVVAAFVVLAIVTLGVPIGMIGFWLTQSGAAAITPAEVSPELLLESTLSSIG
                     YGCAAAVVTTLACVPLAFLLVRFPSRIATTFERIVFLAQGLPSLVVALAIVSLAVHAL
                     KPLYQSAELLVVAYAILFLPLALVSV"
BASE COUNT         1242 a         1947 c         2044 g         1182 t
ORIGIN      
        1 cgcgcgaatc gcgcgctgaa tcgcgacacg attcacgccc cgacgcgacc ctgcgcgctg
       61 ccgtcaagcg ccgtagcgcg ccttttcgcc gggttgtgct cggtaccagc ctggcgttgt
      121 ttgcgatggc ctcatcggcg acattctcgg cggcatctgc cgcagagccg gccaacccgg
      181 acgcaacccc aaccgatgcc cccgaagccg acctgaacat ccaggcgcag ccggcgggtc
      241 aatggaccgg agtatggggg cggtcgaccc tgctcggcga catgggcggc atccgcccgt
      301 ttctaggcca gtacggtgtg acgctgcaag caacggaagt atcggaatat ctcgacaacg
      361 cgcgcggcgg cctgaaaacc ggcggcactt atgacgggct gaccaccgtt acccttggcc
      421 tcgatacgca aaaggccttc ggtctggaag gcggcacgtt caacgcgagc gcactgcaga
      481 ttcacggccg caacctgagc gagttcaacc tcggtacgct gaataccgcg agcgggatcg
      541 aagcgcagga caccacgcgc ctgtgggaac tctggtatca gcagtcgttc ctgaacaaac
      601 gcgtggacgt gaaggttggc cagcaaagta ttgaccagga gttcatggtc agcagctacg
      661 cggccacctt cgtgaacacc atgttcggct ggccaggcct gccgtcgtat gacatgccat
      721 cgggcggtcc ggcgtatccg ctgtctggcc tcggcgtgcg cgtacgcggc cagatcacgc
      781 cttcattgac ggcgctggca ggcgtgttcg acgctgatcc gctcggcaac aatccgaaca
      841 atctcagcgg tacgaacttc aacctgcata acggcgcgat gtatatcggc gaattgcagt
      901 actcgatcaa tcagccgtcc gacggcgaga tggtcggcgt gccgcaaacc ggtttgcctg
      961 gtacctacaa gatcggcttc tggtacaaca acgaacgctt cgcagaccag agcactgaca
     1021 acaccggctt gtcgctcgcc gatccggcaa gcagcggcac gccgcaaaac cataatggca
     1081 actacagctt ttacgccgtc gcggaccaga tgatctggcg tccgaacccc gacgaaccgc
     1141 gtagcatcgg cgtgtttgcg cgggtgatgg gtgcgccggg cgaccgcaac ctggtgagct
     1201 tcagcgccaa cgcgggcatt gtgatgaaag ctccgttcgc cggccgcgac aacgacagcg
     1261 tcggcattgg cctcgcctac atcaaggtcg gcaaccatgt gcatgacctc gatatcgcgg
     1321 cagcggcggc gagcggtggc ccgtacggta tccgcacgca ggaaacagcg gtggaagcga
     1381 cctatcagta ccaggtcaac ccgtggtggg tcatgcaggg tgatctgcaa tacaccttca
     1441 acgcgggcgc cggccagaat cctaacgatc ccacgcagcc gttgcgcaac acgctcgtcg
     1501 ttggcgtgcg caccaccatc accttctgat cggcgtgatc ttgaacgcac gcacccgagg
     1561 cttttgtatg aaacaacttt tcaaatccag agcgctgtcg gccacgctga cggctattgc
     1621 gtcagccgcg gtgctggccg gcggtgtcgt cagcagcatc gcgcacgcag cgccgatcgg
     1681 ctttcttgag acgctgcata agcacaccac gctcatcaac accgtgccgt ccaacggaga
     1741 ccagaatccg tatgcgatcg tggtcgcgcc ggtatcgtcg ggcacggtca agcagggcga
     1801 cgtgctggtg ggcaacttca acaatgccgc taacctgcaa ggtaccggca gcacgatcat
     1861 caactatcat cccgacacca agcagatgac ggtgttcgcc accgtgccgc gtgatctgaa
     1921 ggattgtccg ggcggtatcg gcctttccac cgcgatgacc atgctgaagt cgggctgggt
     1981 gatcatcggc agcacgccaa gcaacgacgg cacgaccggc accaagggcg cgggctgcct
     2041 gatcgtgctc gacaaccagg gcaaggtagc atccactatc gcgagtccta acatcaacga
     2101 cccgtggggc aacatggcgg tcgtcgataa cggcgatcac gctacgctgt tcgtgagcaa
     2161 cgccggcttc ggcgtgggcg gcgcgcaagg caatccgccg gtgttcaagc aggcgaccat
     2221 tcttcgtctc gacctggata tcccgcaagg caaggcgccg gtggtcaagc aggagactgt
     2281 gatcgccagc ggctttggcg cgcaggccga taagggcgtg ttcctggtcg gacccacggg
     2341 tctcgcgttg tcgcaagatc agaagctgct gtatgcgtcc gatgccatcg gcaaccgcgt
     2401 gactgaaatc gacgaaccca tgacccgcga taccagcgcg ggtgtcggcc gcgaattgac
     2461 cgccgatggt ttcctgcatc gtccgctcgc gatggtgacg gcacccaacg ggcacttgct
     2521 ggtgacgaac gcgttgaacg gccaggtcgt ggagatcgat ccgtcgacgg gcaagcaact
     2581 gtacgcacgc tggattgata ccgacaaagc gcaatcgccg ccgggcaatg gtgacttgtt
     2641 cggcatcgcg atgacgccgg aaggcgacgg tttttattac gtacaggacg atgtgaacac
     2701 gctggtcctg gcgaagtaaa gcagagtaaa gcgaagtaag tagttaagcc gagcgaagta
     2761 attagcacag cagggcgaca tcatggcaaa cgatcaagat ccaccgcgcc gccgttttct
     2821 gaaagcgggc gttgccgcgg gcgcggcgtt aggcgcgggt tcagtcgcgc acgccgcgac
     2881 gaaggcgcag ttcaagcaac ccatcgaccc aatgctcgtg gttgagccgt ttttcggcga
     2941 gcaccaggcg ggtatcgtga caccgcagca gggccatacg tacgtggcgt cgctcgatct
     3001 cacgaccgat aaacgtgaag acgtgatcgg tcttctgaaa gagtggacgg atgcggccgc
     3061 gcgcatgtcg cgcggtgaca cggccaagcc cttgcccgcc gacgacaaag ccgcacccga
     3121 ttccggcgat atcctcggcc taggcgccgc gggcctaacg atcacattcg gtttcggccc
     3181 gggacttttc acgcacgagg gcaaggatcg ctacggtctg gagaagcgcc ggcctgccgc
     3241 gctggtcgac ttgccgcgct tcaacggcga ccagttgctg ccgcagaaaa ccggtggcga
     3301 catcctgatc caggcctgcg ccaacgacgc acaagtggca ttccatgccg tgcgtcaact
     3361 tgcacgcatg ggctacggca tcgtggcgat gcgctgggca caagcgggtt tcctctccgg
     3421 tccgcgtgga caaacaccgc gcaacctgat gggcttcaag gacggcacca acaatccgtc
     3481 gaccgcgaaa ccggcgctga tgaatcagtt cgtgtgggcc aacgcgtccg acgcaccttg
     3541 gatgaacggc ggcacgtaca ccgtcgtgcg ccgtatccgt atcacgctcg aacactggga
     3601 caccatggaa cgtggtttcc aggaacaggt gatgggccgc gagaaataca gcggcgcgcc
     3661 gatcggcaag aagaatgaat tcgatgcgct tgacctcgat gccgccgata aagacggcaa
     3721 ccaggtgatt ccggaaaact cgcacgtgcg tttgtcgaac caggcaacga acaacggtgc
     3781 gcagatcctg cgccgttcgt attcctacag cgacggcacc gatttttata tcgagcggtg
     3841 gccgccatgg cgccaggaaa ccgagtacga cgcggggttg atcttcgtcg cgcatcaaag
     3901 tgatccgcgc accggtttcg ttccgatcaa cgaacggctg gcgaagttcg acatgatgaa
     3961 tcagttcacc acgcacgtgg gcagcgcggt gttcgcgtgt ccgccgggcg tccggccggg
     4021 atcgtttatc ggcgcggggc tgttcgaaac ctgattcaaa gaaagccaag ctaaagcaca
     4081 cgccggcaac gagccggcgc accacaacaa aaggaatgac tgcaatgaac accacacgct
     4141 ccctgcccgt gctgcgcacg ctttgcggca tcgcggtgct ggctgccgcg gcggcgttgc
     4201 cgctgaactc ggaagcggcg acgctgacct tgtacaacgc gcaacacgag caggtcgtgg
     4261 ccgcgctggc gaaggacttc gagaagcaat ctggggtgtc ggtgaaggtt cgcaacggcg
     4321 aaggcccggc catggcggcg caactggtcg cggaaggatc ggcttctccc gccgatgtct
     4381 atttcaccga gaattcgccc gaactgatgt tgctggacga gaagggcctg ctcgcgaaaa
     4441 ccgatgcctc cacgctctcg accatcccgt cgcgctacaa ctcgccgcag ggcgactggg
     4501 tcggcgtgct cgcgcgtgag aacgtactgg tctacaacac gaagaagatc gatgcggcgc
     4561 aactgccggc atcgctgatg gatctcgcca aaccggagtg gaaaggcaag gtcggcattg
     4621 cacccagcga cggcgatttc ctgccggtgg tgagcgcggt cattgcgatg aagggcgaag
     4681 cgcaagcgct ggactggctc aagggtctga agaaaaattc gcagattttc gatgacgacg
     4741 agggtgtggt ggccgcagtg aatcgaggcg gcgtggcaac gggcgtagtg aacaactact
     4801 actgggcgcg cctgcatgtg caactcggcg acagcgcgac tcgcagcgcg atctatcact
     4861 tcggaaatgg cgatgtgggc gcactcgtga acgtatcggg tgcggcggta ttgaagtcga
     4921 gcaagaacca gaaggaggcg cagcaattcc tggcgtatct cgtcagcgaa cgtgcgcagg
     4981 acctgatggc caagggcaag atcgcgttcg aatatccgct gcatgcgggt gtttctcccg
     5041 atccgctgct caagcctttc gaccagttga gcccgccgtc gttgacggtt gaacaactcg
     5101 gcgatgacag caaagccgcg aagctgatgc gccaggccgg actactgtaa gcgtaggaaa
     5161 gtatgagcga tgtcgtgaag gcggttggcg tatccgcgct gcctgaaccc cgcagccgca
     5221 aacgcgcgcc gcggggtttg ctcgtggcgg cgggattgtg cgcgctgctg gtgctgatgc
     5281 cgctcgcctt cacggtgtat cgcgcggtga cgttcggctg ggatgacgcc atcgagctga
     5341 ttttccggcc gctggtgggc gaattgctca tcaacacgct gtccattacc gtgagcgcca
     5401 cgctcgtgtc agcggtggtg gggacggcgg cagcatggtt tatcgaacga acgcgcttgc
     5461 ctgggcgacg actgtgggct gcgctcacgg tcgcgccact cgccatgcct gcgttcatca
     5521 cgagttacgc gtgggtctcg ctgagcctcg atttgcagga cttcgcgggc gcgttgcttg
     5581 tgatttccac tgcgtatttc cccctcgttt atctgccggt cgccgctgct ttgcgcggca
     5641 tggacccggc gcttgaagaa agcgcacgct cgctaggttg cggccgtgtc ggcgtgttcg
     5701 tgcgcgtggt gctgccgcaa ttgcggcccg cgctgctcgg cggaatgctg ctggtggcgc
     5761 tgggcgtgct gtcggaattt ggcgcgttca cgctgctgcg ctttcggact ttcaccacgc
     5821 agatctacgc cgaatacagg acgagcttcg acagcagcgg cgcgtcggta ttcgcgtgca
     5881 tccttatcgc aatgtgcctc ttctgcctcg cgctggaaat gcgcgtgcgg ggcggcgcgc
     5941 gctatgaacg cgtcgatcgc ggcgtgaggc gtgccgcatt gcgctatgaa ctcggcgtat
     6001 ggcgatgggc ggtggtcgcc gcgtttgtcg tgctggcgat cgtgacgctg ggcgtgccta
     6061 tcggcatgat cggtttctgg ctgacacaaa gcggtgccgc cgccatcacg ccggcggaag
     6121 tgtcaccgga actgctgctc gaatcgacgt tgtcatcgat tggttatggg tgtgccgccg
     6181 cggtcgtcac tacgctcgcg tgcgtaccgc tggcgttcct cctcgtccgt ttccccagca
     6241 ggattgcgac tacattcgaa cgtattgtgt tcctcgcgca ggggttgcct agcctcgtcg
     6301 tcgcactggc gatcgtgtcg ctggccgtgc acgcgttgaa gccgctgtat caaagcgctg
     6361 agctgctggt cgtggcctac gccattttgt tcctgccgct cgcgctggtg agcgt
//
LOCUS       DATGBK010000280         5402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_304035, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000280 DATGBK010000000
VERSION     DATGBK010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5402
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304035"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..189)
                     /locus_tag="VKJ77_04140"
     CDS             complement(<1..189)
                     /locus_tag="VKJ77_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HMC44496.1"
                     /translation="MTQLGALWVYLAATPLLGLTLTLFAYLIAQGIYARARFNPLANP
                     VLIAVALVVAVLSMTHTPY"
     gene            complement(200..574)
                     /locus_tag="VKJ77_04145"
     CDS             complement(200..574)
                     /locus_tag="VKJ77_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012337109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HMC44497.1"
                     /translation="MLRALATLLLFQCFGEGLSMGLHVPVPGPVIGLLLLFGYLLMRP
                     AAVDSIEPTALELLRHLSLLFVPAGVGIMAAAGQVRGEGMAIAVALVVSTTLAIAVTA
                     LVTRALMRRQIRRARVNTPSGL"
     gene            888..2387
                     /locus_tag="VKJ77_04150"
     CDS             888..2387
                     /locus_tag="VKJ77_04150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HMC44498.1"
                     /translation="MTDQATPSSQTNSDPYTVTTGVSGLDDILGGGLIKGGLYLIEGM
                     AGAGKTILSTQIGFHRVAEGDPVLYITLIAESHSKLLSHLKGLSFYNADAISDKMLFV
                     SGYHELMRDGLNGFLALIASTIKTSRPRFMVIDGFRSAREFSSTELELSQFIHELSAF
                     VTAAGCTTLILAPLSGNEPHPEHTLVDGLVELNRFATGMRRAREIEVHKLRGRDHLLG
                     RHFFKITADGLVTFPRLEARSMLLEGAPDLKSKLAFGLPDFDTMLGGGVVKGSTTTLI
                     GPSGIGKTLLSLKFLEAGVAKGERCVYFGFYESPARLVAKAESVSIHLADAVADGRLI
                     VEWRPAVELAIDELAAELISVVKRAGASRLVVDGIEGFHDSANRMERFGLFLNALTHR
                     LRQESVTTMLTEELPLYADMAHGNSIRASAMTENIVLMRYVETSTSLYRIVSIIKQRE
                     SAHDPSIRRFVIDENGLHLTDGFIGTTTLLSARGTIPLTLSDPDTGTRK"
     gene            2384..2740
                     /locus_tag="VKJ77_04155"
     CDS             2384..2740
                     /locus_tag="VKJ77_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC44499.1"
                     /translation="MKKILVVDDEFDLLTTWRLVLQMEGYEVSTASNGLLALESVRAN
                     PPDLIITDWMMPTMDGVALCHVLAADDTLAQIPVVLSSAAARTPTVTHPHLEFHRKPL
                     SIDDLINIVTRLIGPA"
     gene            2837..3091
                     /locus_tag="VKJ77_04160"
     CDS             2837..3091
                     /locus_tag="VKJ77_04160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HMC44500.1"
                     /translation="MVQDQVEGAAQTVVGKVQDAVGGLTGDTATQAEGKARQVLGKIQ
                     LNYGETIDQVREAVIAKPINGVLVAGAIGFVLGAIWARQR"
     gene            3266..3499
                     /locus_tag="VKJ77_04165"
     CDS             3266..3499
                     /locus_tag="VKJ77_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44501.1"
                     /translation="MTITASRLSDTEVLVDHTVYTFSDSVVADAFQRCIGQDSVDSCS
                     TSHAPASSRTANDAAPDDLPPGSIISPSLGGMP"
     gene            complement(3558..3947)
                     /locus_tag="VKJ77_04170"
     CDS             complement(3558..3947)
                     /locus_tag="VKJ77_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44502.1"
                     /translation="MTTTQPTTTQRDLDNSKPLGDSGSGASGGGSGGNLPGGAATGGN
                     ARQGVRPADAPQPSSAKAEPGEPDGRNLKQHPKQTAEVPLGSGNTPEASGRGGFGSHS
                     SEPEGVSKPRSVDPMPATNDKDDKPSK"
     gene            complement(4074..>5402)
                     /locus_tag="VKJ77_04175"
     CDS             complement(4074..>5402)
                     /locus_tag="VKJ77_04175"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/UbiB family protein"
                     /protein_id="HMC44503.1"
                     /translation="SSGVLSMASGLLAQHPGLAETAVRVALAELDTLKAPLKDALLRR
                     ALENALPPGRAAALIDVDAEPECCGIAQQTHRALIMLDVPPRIGASAPPAAVRITLIR
                     TDTRTELVQDLDVANSAARLAGRFSREVREHNVGALIARLTESVTGMLDLRQRAADQS
                     FLRYRLREVNKDSRVVVPEVLWDFCSDTALVTRAVRRVPLSDAEALRAHGLDPVRLIA
                     TWIEVFFETALGEGVFHAGLEAAGAAVSIEPDTFGALVLDGDSPLTFFAAHERSFLVA
                     GSHALLHGDHKAAAREHMRHGRPDEHEEQHAVRVEATYRREAERFAGDAHRHRTAADL
                     FTALGKGPLEHAFGDAHTGIASRAALLARSAQSIEEMARRIAPDIDVWPIARRVIMRL
                     ALDQFSSHGLVAQLAKEAVHWPHALPRVPNLLADWVTRQNRRNAESRSAR"
BASE COUNT         1027 a         1733 c         1642 g         1000 t
ORIGIN      
        1 atacggcgta tgcgtcatgc tcagcacggc gacgaccagc gccaccgcaa tcagcacggg
       61 gtttgcaagc gggttgaacc tggcgcgagc gtagatgcct tgtgcgatca gatacgcgaa
      121 cagggtcaaa gtcaaaccga gcagcggtgt agcggcgagg tagacccaaa gggcgccgag
      181 ttgtgtcatg gcgtggtcct taaagccctg agggcgtatt cacacgcgcc cggcggatct
      241 gacgccgcat cagcgcgcgc gtgacgagcg cggtgacggc aatggcaagt gtcgtgctca
      301 ccaccagcgc aactgcaatc gccatccctt cgccgcgtac ctggccggcg gcggccatga
      361 tgccgacacc cgccggcacg aacagcaacg acaaatgccg gagcagctcg agcgccgtag
      421 gctcgatcga atcgacggcg gctggcctca tcagcagata gccgaacagc agcaacaaac
      481 cgatcaccgg tccaggaacg ggcacatgca agcccatcga aaggccttct ccgaaacact
      541 ggaacaaaag caaggtagca agggcgcgca gcatggcgtg gtcaattgag tggtgtttga
      601 cgagtgaaag cggtgtggcc tgaatgatga cacgcggagt gcccggcata gtgccaggcg
      661 tctcgcgcgc ggacaaacgc gaccgggcgc gaaaagtgcg cgcgatcagg ctgatgtggc
      721 aaggctgatg ccgcgtgggc tcagttcaag cgctcagctc ccgtttccgg tcgatttaat
      781 cgacaccttc ataaaaattt acaaatgccg acagcgctcg ccatctcggc gataatccgt
      841 ttctactcga cacacgaacg agccgggcga cggcactcga gatatccatg accgaccaag
      901 ccactccatc cagccagacc aattccgacc cgtacacagt gacaaccggc gtgtccggcc
      961 ttgacgacat actcggtggc ggcctgatca agggcgggtt gtatctgatc gaaggcatgg
     1021 cgggagcggg caagaccatc ctgtccacgc agatcggttt tcatcgcgtg gccgagggtg
     1081 acccggtgct gtacatcacg ctgatcgcgg agtcgcattc gaagctgctg tcgcatctaa
     1141 aagggctgtc gttctataac gccgacgcaa tctcggacaa aatgctgttc gtctccggct
     1201 atcacgaact gatgcgtgac ggcctgaacg ggttcctcgc gctgatcgcg tcgaccatca
     1261 agacaagccg cccacgtttc atggtgatcg acggttttcg cagcgcccgc gaattcagtt
     1321 ccacggagct ggagttgtcg cagttcatcc acgaattgag cgcgttcgtg acggccgcgg
     1381 gctgcaccac gctgattctc gcgccgctct cgggcaacga gccacatccg gaacacacgc
     1441 tcgtggacgg cctggtcgaa ctcaaccgtt tcgccaccgg catgcggcgc gcgcgggaaa
     1501 tcgaagtgca taaattgcgc ggccgcgatc atctgctggg acgccacttc ttcaagatca
     1561 ccgccgacgg cctcgtcact ttcccacgcc tggaagcgcg ctcgatgctg cttgagggcg
     1621 caccggacct gaagtcgaag ctggcgttcg gcctccccga cttcgacacc atgctcggcg
     1681 gcggcgtggt gaaaggctcg accacgacgc tgatcgggcc atccgggatc ggcaagacgc
     1741 tgttgtcgct gaaattcctc gaagccgggg tcgctaaagg cgagcgctgc gtgtatttcg
     1801 gcttttacga atcgccggcg cggctggtcg ccaaggcgga atccgtgtcc atccatcttg
     1861 ccgatgcagt tgctgacggt cgcctgatcg tcgagtggcg gccagcggtg gaactcgcca
     1921 tcgatgaact cgcggccgag ctgatttcgg tggtgaagcg cgcgggcgcg tcgcggctgg
     1981 tggtggacgg gattgaagga ttccacgatt cggctaaccg catggagcgt ttcgggctgt
     2041 tcctgaacgc attgacgcac cggctgcgcc aggaaagcgt caccacgatg ctcaccgagg
     2101 agctgccgct ttatgccgac atggcgcatg gcaactcgat ccgcgcgtcg gcgatgacgg
     2161 agaacatcgt gttgatgcga tacgtggaga caagcacgtc gctgtaccgg atcgtctcta
     2221 tcatcaagca gcgcgaaagc gcccatgatc catccatccg ccgtttcgtc atcgatgaaa
     2281 acggcttgca tctcacggac ggtttcatcg gcacgaccac gttgttatcg gcgcgcggca
     2341 cgatcccgct gacgctgtcc gacccggaca ccggcacgcg gaaatgaaaa agatcctcgt
     2401 cgtagacgat gaatttgatc tcctgaccac ctggcggctt gtgctccaga tggaaggata
     2461 cgaggtcagt acggcgtcaa acggcttgtt ggcgctcgag tcagtgcgtg ccaatccgcc
     2521 cgacctgatc atcacggact ggatgatgcc cacgatggac ggcgtcgcgt tatgccacgt
     2581 actggccgcc gacgacaccc tcgcgcagat tcccgtcgtg ctctccagtg ccgccgcgcg
     2641 cacgccgacg gtcacgcacc cgcacctcga attccaccgt aagccgcttt ccatcgacga
     2701 tctcatcaac attgtcacgc gcctgatcgg acccgcttga ctcgcagccc ctcgtttggg
     2761 cacgaaccct gctctatcaa acactccggt acgccggatt cttcgataaa ccgcttcaac
     2821 tagaacggga ggcaccatgg tgcaggatca ggtagaaggc gcggcgcaaa ccgtcgtggg
     2881 caaggtgcag gatgcggtcg gcggtttgac gggcgacacg gcgacgcagg ctgaaggcaa
     2941 ggcccgccag gtgctcggca agatccagct taactacggc gagaccatcg accaagtccg
     3001 tgaggcggtc atcgcgaagc cgatcaatgg cgtgctcgta gcaggtgcaa tcggattcgt
     3061 tctcggcgcg atctgggcac ggcaacgata agttgggcac cacgggttgt ggggaaaaag
     3121 ctggccgtgc tgaaaagtgc ggccattttt ttatgtcctg attgtgtccc gattgcgtcc
     3181 cgattggctc gttttcaggc tagcgccact gatcgggcgc ggttgatgct gattttcatg
     3241 atgccaacct gataggggaa cacccatgac gatcaccgca agccgtctct cagacacaga
     3301 agtgctggtc gaccataccg tttatacatt ctcggacagc gtcgtggccg acgcgtttca
     3361 acgttgcatc gggcaggatt cagtggattc gtgcagcacg agccacgcgc cggcgtcgtc
     3421 gcgcacagcg aacgatgccg ccccggacga ccttccgccc ggtagcatca tttcaccctc
     3481 gctcggcggc atgccgtgac gcgttttgca taaaaacggg cgctgctccc gcggcgtccg
     3541 cagttcccgc agttacgtta tttcgacggc ttgtcgtctt tgtcattggt cgcgggcatc
     3601 ggatccaccg accttggctt cgatacccct tccggctccg aactgtgtga tccgaagccg
     3661 ccgcgaccgc tcgcttcggg cgtgttgccg ctgcccagcg ggacttcggc agtctgcttt
     3721 ggatgttgct tgagattgcg accgtcaggc tcaccgggtt cagctttcgc gctcgatggc
     3781 tgcggcgcgt cggccggcct cactccctgg cgcgcgttac cgccggttgc cgccccgccc
     3841 ggcagattac cgccggagcc gccgccgctc gcgccgctac cggagtcccc aagcggtttg
     3901 ctgttatcga ggtcgcgttg cgttgtggtc ggttgcgttg tggtcatcgt gtgctcctgt
     3961 cctgatggtt tgaagtccca tcagttgagc aactgacgtt cctcgtcgcg ctttccctgg
     4021 ccttttttcc tcgccttttt cccgctccgc gcgaccggga tatcaacgcg cagctaccgc
     4081 gcagaacgcg actccgcatt ccggcggttt tgtcgcgtca cccaatccgc cagcagattc
     4141 ggcacacgcg gtaacgcatg cggccagtgc acggcttcct tcgcgagttg cgcgacgagg
     4201 ccatgcgaac tgaactgatc cagcgccaga cgcatgatca cccggcgcgc gatcggccac
     4261 acgtcgatat ccggagcaat ccgccgcgcc atttcctcga tgctctgcgc cgagcgcgca
     4321 agcagcgccg cccgggacgc gatgcccgta tgggcatcgc cgaatgcgtg ctccagcggt
     4381 cctttgccca atgcggtgaa aagatcggcg gcagtccgat gtcgatgggc gtcgccggca
     4441 aaacgctccg cctcccgccg atacgtcgct tccacacgca ccgcatgctg ctcctcgtgt
     4501 tcgtcgggcc ggccatgccg catgtgttcg cgcgcggccg ccttgtgatc gccgtgcaac
     4561 aacgcgtgcg acccggcaac gaggaaactg cgctcgtgcg cggcaaaaaa cgtgagcggc
     4621 gaatctccgt caagcacgag cgccccgaag gtgtccggct cgatgctgac tgcggcaccc
     4681 gctgcttcca gaccagcgtg gaacacgccc tcgccgagcg ccgtctcgaa aaaaacctcg
     4741 atccacgtgg caatcaatcg gaccgggtcc aggccgtggg cccgcagcgc ttcggcgtcc
     4801 gagagcggta ccctgcgcac agcacgcgtg acgagcgccg tgtcgctgca aaagtcccag
     4861 agcacttcag gcacgacgac acgcgagtct ttgttcacct cgcgcaggcg gtagcggaga
     4921 aaactttgat cggcagcgcg ctggcgcaaa tcaagcatcc cggtaaccga ctccgtcaaa
     4981 cgtgcgataa gcgcgccgac attgtgctcc cgtacctcac gtgaaaaacg cccggccaga
     5041 cgcgccgccg agttcgccac atccaggtct tgcaccagtt cggtgcgcgt atcggtacgg
     5101 atcaacgtga tgcggacggc tgccggtggt gcgctcgcgc cgatgcgagg gggcacatcc
     5161 agcatgatca gcgcacgatg cgtctgctgc gctattccgc agcattcagg ctcggcgtcc
     5221 acatcgatca acgcggcagc ccgtcccggc ggcagcgcgt tctccagcgc ccggcgcagc
     5281 agtgcatctt tcagcggcgc cttgagggtg tccaattcgg caagcgcaac gcgcaccgcc
     5341 gtctcggcca acccgggatg ctgcgcgagc agacccgacg ccatgctcag cacaccggaa
     5401 ga
//
LOCUS       DATGBK010000281         1612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_281146, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000281 DATGBK010000000
VERSION     DATGBK010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281146"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="VKJ77_04180"
     CDS             <1..246
                     /locus_tag="VKJ77_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018418659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC44504.1"
                     /translation="MAPMPDSARRDLLEILDDRHGRRSTIATSQIPVDNWHGALGDPT
                     LADAILDRLVHNTYRINMNGESMRKLKISLTENQQSE"
     gene            353..>1612
                     /locus_tag="VKJ77_04185"
     CDS             353..>1612
                     /locus_tag="VKJ77_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007578722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC44505.1"
                     /translation="MNRRRPDLQAIDVSAWPTVAYTEFDQATRNMFEKRQQAILRYVA
                     GESIREIEKSAGINRRQLYRWLERAQEQHPDGRPFGFRGLIRYMRIADYERVRDVQVH
                     GERGSRGAAGALAQLFEHYPALAGWLLLQVKRRRVLLEQIHTDGHLRTRLRGLQSLHD
                     DFLHQCRSVGLTAGDYPFNTADRALRSLSRRLKDEMLRTFGTAARSAGAPHLKGLPRL
                     DAAGTPAATRPYQVVEFDGHRLDIRLKVVVRDPLGFAHEFEMERVWLLAIIDVCTRAV
                     LGYHIALAKEYSRYDVIKTIENALEPHHVPAFTIAGLARGTQDGFPSERLPELAYATW
                     EWMKLDNAKANLANETLTALCEFVGCVVDAGPKYSPDERPYIERFFGTIASRLSSRLP
                     GYTGSHPRDLRRALADPEGDLRLYVSLD"
BASE COUNT          346 a          505 c          448 g          313 t
ORIGIN      
        1 atggcgccaa tgcccgacag cgctcggcgt gatctgctcg aaatacttga tgatcgccac
       61 ggccgtcgct caaccattgc aacaagccaa attcccgtcg acaactggca cggtgcgctc
      121 ggcgatccaa cgcttgccga cgccatcctg gaccggcttg ttcacaacac ttatcgaatc
      181 aacatgaacg gtgaatcgat gcgaaaacta aaaattagtt tgaccgaaaa ccagcagtca
      241 gagtaaaaac agaaaccccc tgcgtcgctg cgctccgact gtccagcttc gcgcgaaaca
      301 cctgtccgcc ttcatgcgaa acgcgtgtcc agcttccgcg aaatacgcac ttatgaatcg
      361 ccgcagacca gatctgcagg cgatcgacgt tagcgcctgg cccactgtcg cctataccga
      421 gtttgaccag gcgacgcgga acatgttcga gaagcgccaa caggccatat tgcgctacgt
      481 cgccggggaa tcgatcaggg aaattgagaa gtccgccggt atcaatcgcc gtcaactgta
      541 ccgctggctc gaacgcgcgc aggaacagca tcctgacggg cgccctttcg gctttcgggg
      601 acttatccgc tacatgcgca tcgcagacta tgagcgagtg cgcgacgtac aggtgcacgg
      661 cgaacgcggc agtcgaggcg ccgctggcgc tctggcgcaa ctctttgaac actatccggc
      721 gcttgcagga tggctgcttc ttcaggtcaa acgtcgcagg gtactgcttg agcagataca
      781 taccgacggt cacttacgaa ctcgcctgcg cggtctgcaa tcgctacacg atgacttcct
      841 gcaccaatgt cggtcggtag ggttgacggc aggtgactat ccgttcaaca cagccgaccg
      901 tgcactccgt tcgctgtcac gacgcttaaa ggatgagatg ttgcgcacgt tcgggacggc
      961 ggcccgctcg gccggagcgc cgcacctcaa gggcttgcct cgcctcgacg cagcaggtac
     1021 gcccgcagcg acgcgtccgt atcaggtcgt cgaattcgac ggccaccggc tcgacatccg
     1081 gctcaaggtt gtcgtacgcg atccactcgg ctttgcacac gaattcgaga tggagagggt
     1141 ttggctcctt gcaatcatag acgtgtgtac gcgcgccgtg ctcggttacc acatcgcgtt
     1201 agccaaagaa tacagccgct acgacgtcat caagacaatc gagaatgcgc tcgaacctca
     1261 tcacgtgccg gcgttcacga tagctggcct cgcccgtgga acgcaggacg gctttccgtc
     1321 ggagcgccta cccgaactgg cgtatgcaac ctgggaatgg atgaagctcg acaacgcgaa
     1381 ggcaaatctc gcgaatgaga ccttgacggc gctatgcgag ttcgttggct gcgtggttga
     1441 cgccggaccg aaatacagtc ccgacgaacg gccttatatc gagcggttct tcggcacgat
     1501 cgccagtcgc ctctcatctc ggttgcccgg ctacaccggt tctcatccac gagatctgcg
     1561 tcgggcactc gctgatcctg aaggcgacct gcgcctctac gtctcccttg ac
//
LOCUS       DATGBK010000282         2587 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_327328, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000282 DATGBK010000000
VERSION     DATGBK010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2587
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327328"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VKJ77_04190"
     CDS             complement(<1..406)
                     /locus_tag="VKJ77_04190"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HMC44506.1"
                     /translation="MSQTDFLPTGPELTVVVPVYNEEEGLAALFSRLYPALDALGATY
                     EVIFINDGSRDKSAALLAQQFRARPDTTRVILLNGNYGQHMAILAGFEQSRGESVITL
                     DADLQNPPEEIAKLLEKMRDGYDYVGTIRQQRQ"
     gene            complement(496..1659)
                     /locus_tag="VKJ77_04195"
     CDS             complement(496..1659)
                     /locus_tag="VKJ77_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HMC44507.1"
                     /translation="MTQNVPSNTLAFLPFVRAEIDEETIQGVVDVLRSGWITTGPQNQ
                     QFEAELSAYCGGRPVRTFNSGTATMEIGLRIAGVGDGDEVITTPMTWVSTSNVIIETG
                     ATPVFADIDPVTRNIDLDLLEKAITPRTKAILPVYLSGLPVDMDRLYGIAREHGLRVI
                     EDAAQAFGSSWRGQKIGAFGDIISFSFHANKNVTSIEGGALVLNNEEEAVLAQKYRLQ
                     GITRTGFDGMDCDLLGGKYNLTDVAARVGLGQLKHVERFTEQRRELARAYFESFANGA
                     AVRMGVQLPVPNFTDSNWHMFQIALPLERLSLSRSAFMGLMKERGIGTGVHYPALHLF
                     TLYRGRGFHEGMFPHAEKYGASTVTLPLFTQMTQDDVTRVVHAVNEICAAHAV"
     gene            complement(1768..2139)
                     /locus_tag="VKJ77_04200"
     CDS             complement(1768..2139)
                     /locus_tag="VKJ77_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMR family transporter"
                     /protein_id="HMC44508.1"
                     /translation="MNPISFICIITGVMLNAGAQLLLKAGVNAVGHFEFTPANIVPIG
                     FKIATQWPIIGGLACYVFSVVVWIVGLSRVDVSIAYPMLSLGYVVNAFAAWYLFGEIL
                     SLQRLIGIGIILIGVVVLTRG"
     gene            complement(2256..>2587)
                     /locus_tag="VKJ77_04205"
     CDS             complement(2256..>2587)
                     /locus_tag="VKJ77_04205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose transferase"
                     /protein_id="HMC44509.1"
                     /translation="LVPAVKAAMARLPADTPFYSVAKLDHTMPFYLGHTMIMVQEPDE
                     LQFGVTTEPQKWVPTIDEWIQRWDAQRYGLALMPPGRYDELLAKHVPMQVIARDDRRV
                     IVEKPQP"
BASE COUNT          512 a          758 c          783 g          534 t
ORIGIN      
        1 cctggcgttg ctggcgaatc gtgccgacgt agtcgtaacc gtcgcgcatc ttctcgagca
       61 gcttggcaat ttcctcgggg ggattctgca agtcggcgtc gagcgtgatg acgctttccc
      121 cacgcgattg ttcgaagccc gcaagaatgg ccatgtgctg gccatagttg ccgttcagca
      181 ggatcacgcg agtggtgtcc ggccgcgcgc gaaactgctg ggcgagcaat gccgccgact
      241 tgtcgcggct gccatcattg atgaagatca cttcatacgt cgcgccgagc gcatcaagtg
      301 ccggatacag gcgggagaag agtgccgcga ggccttcttc ttcgttgtac accgggacca
      361 cgaccgttaa ttcggggccg gtcggcagaa aatccgtttg actcatgttg acgatggttc
      421 cgctaggtgt ccgtggtgaa aaatgtgatt cttgttttgc tgtgccatcc gcgtggcgtg
      481 cgtacctgcg ttgccttaaa ccgcatgcgc cgcgcagatt tcgttgactg catgcacgac
      541 gcgtgtcacg tcgtcctggg tcatctgcgt gaaaagcggc agcgtgaccg ttgatgcgcc
      601 gtatttttcg gcgtgcggga acatgccttc gtgaaacccg cgtccgcgat acagcgtgaa
      661 caggtgcagc gccgggtaat gcacgcctgt gccaatgccg cgttccttca tcaagcccat
      721 aaacgccgag cgcgaaagcg acaggcgctc aagcggcagt gcgatctgga acatgtgcca
      781 gttgctgtcg gtgaaattcg gcaccggtaa ttgcacgccc attcgtacgg ccgcgccgtt
      841 cgcgaaactc tcaaagtatg cgcgcgccag ctcgcgacgt tgttccgtga agcgctcaac
      901 atgcttgagc tggccgaggc cgacgcgggc ggcgacatcg gtgagattgt atttgccgcc
      961 gaggagatcg cagtccatgc cgtcaaagcc ggtgcgcgtg atgccttgca gccggtactt
     1021 ttgtgcgagc acggcttctt cctcgttatt caggacgagc gcaccgcctt cgattgacgt
     1081 gacgttcttg tttgcatgaa agctaaacga aataatgtcg ccgaaagcgc cgatcttctg
     1141 gccgcgccag gacgagccaa acgcctgggc cgcgtcttcg atcacgcgca ggccatgttc
     1201 gcgcgcaatg ccgtagagcc ggtccatatc gacgggaagg cccgacagat acaccggcag
     1261 gattgccttg gtacgcggcg taatggcctt ttcgagcagg tccaggtcga tattgcgcgt
     1321 aaccgggtca atatccgcga acaccggcgt agcgccggtt tcaatgatca cattgctggt
     1381 cgagacccag gtcatgggtg tggtgatgac ttcgtcgccg tcacccacgc ccgcgatccg
     1441 caagccaatt tccatggtcg ccgtgccgga attgaaggtc cgcaccggac ggccgccgca
     1501 ataggcggac agttcggcct cgaactgctg gttttgcgga ccagtcgtga tccagcccga
     1561 acgcagaacg tcgacgacgc cctgaatcgt ctcttcgtcg atctcggcgc gtacgaaagg
     1621 cagaaaggca agcgtattag aaggcacgtt ctgggtcatg gaagctctgc gaaggaaagg
     1681 aacggtgaga tctttgatgc acagtctttg atacacagtg tcagccgggt tcaggttcgc
     1741 tcaagcgcat ctggccgcca gagcccctca accgcgcgtc agcaccacga cgccgatcag
     1801 gataatgccg atgcctatca gccgttgcaa tgacaggatt tcgccaaaca aataccacgc
     1861 tgcgaacgcg ttcaccacgt agccgagcga gagcatgggg taagcgatgg agacgtcgac
     1921 ccgcgacaat cccacgatcc acaccaccac gctgaacacg tagcatgcca gtccgccgat
     1981 gatcggccat tgcgtcgcga tcttgaaacc gatcggcacg atgtttgccg gcgtgaactc
     2041 gaaatgaccc acggcgttca cgcccgcttt gagcagcaac tgggcaccgg cgttcagcat
     2101 gacgccggtg atgatgcaaa tgaaggatat cgggttcatc gttggccgta atagggtttt
     2161 tttcggagcg cggcgaggcg gtaagacttc gtggcgtctc cggcttttgt attcactggc
     2221 ggccggtgct ccggtcaaca cgcggcgcca ttgtttcaag gctgaggctt ctcgacaatt
     2281 acccttcgat catcccgcgc aatgacctgc atgggcacgt gcttcgccag caactcgtca
     2341 taccggccgg gcggcatcag cgcaagaccg tagcgttgtg cgtcccagcg ctggatccac
     2401 tcgtcgatcg tcggcaccca cttctggggt tccgtcgtga ctccgaactg cagttcgtcg
     2461 ggttcctgaa ccatgatcat ggtatggccg agatagaacg gcatggtgtg atcgagcttg
     2521 gcgacagagt agaacggcgt gtcggcgggc aaccgggcca tggcggcttt caccgccggc
     2581 accaact
//
LOCUS       DATGBK010000283         1739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_281163, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000283 DATGBK010000000
VERSION     DATGBK010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281163"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..>1739)
                     /locus_tag="VKJ77_04210"
     CDS             complement(48..>1739)
                     /locus_tag="VKJ77_04210"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HMC44510.1"
                     /translation="TGDVPEAYRAMDRFDARKAVARDLAATGALIKEEPYVSKVPVSE
                     RTGEVIEPLLSLQWFCKMEDLARPALEAYRNGSLVFVPERFGRTYEQWLEGIRDWNVS
                     RQIWWGHQLPVWYTPNDDVIVALSEEEAKQLARQRHGTDDLRRDPDTLDTWFSSGLWP
                     FSILGWPEQTPELEHWYPNAVMITGREIIFLWVARMVMLGLRFVGRLPFTTVFITPLV
                     FDIQGRKMSKSLGNAIDPLDMIAKYGADGFRMGTLMQMRLESQELRFDERVCDEAKRF
                     NTKLWNALRFICSLPEGLPTAFKLPPPSELTMADKWILTELQQCVADVTASLDTYQMG
                     PASQRLHDFGWYRFCDWYLESSKAPSQHSTRAAVLSFVFNTFVRALHPIEPFVTEEIW
                     QTLPHDGSTIVTASWPDAVELPTFPVEAAMYSAFIASVDRIRNSRSEMGLKPTERVTL
                     LSAPLPTALVEQYGLLVRGDIVIDAGLPADVPFAELLAQIKVQADAGVLRDRYTREIA
                     KLDDEVGRLERKLGNPDFIAKAKPDVVKAERDKLDAYQRDRERARRALDDLGPAA"
BASE COUNT          366 a          544 c          489 g          340 t
ORIGIN      
        1 aaacgccacc cccaggctcg acaacaagcg tggaattcac gcagcgccta cgcggcaggc
       61 cctaaatcat cgagcgcacg gcgtgcgcgt tcgcggtcac gctgatacgc gtcgagcttg
      121 tcgcgctccg ctttcacgac atcgggtttg gcttttgcaa taaagtcggg gttgccgagc
      181 tttcgttcca agcggccaac ttcatcgtcg agtttcgcga tttcacgcgt atagcggtcg
      241 cgcaacacgc cggcatcggc ctgcactttg atctgtgcga gcaactccgc aaacggcaca
      301 tcggcgggca agccggcatc gatgacgatg tcgcctcgca ccagcagacc gtattgctcg
      361 acgagtgcag tgggtaatgg cgcggacagc agggtgacgc gttcggtcgg tttgagaccc
      421 atttcgctgc gcgaattccg aatgcgatcg accgacgcga tgaaggcact atacattgcc
      481 gcttccaccg gaaaggtggg caactcaacg gcgtcgggcc atgacgccgt cacgatggtc
      541 gaaccatcgt gcggcaacgt ttgccaaatc tcttcggtta caaatggctc gatcggatgt
      601 agcgcgcgaa cgaacgtgtt aaacacgaac gaaagcaccg ccgcacgcgt cgagtgctgc
      661 gacggcgcct tgctcgactc caaataccag tcgcagaagc ggtaccagcc gaagtcgtgc
      721 aaccgctgcg acgcggggcc catttggtat gtgtccagcg acgccgtgac atccgcgacg
      781 cactgctgga gttcggtgag aatccattta tcggccatcg tcagctcgga cggtggcggc
      841 agcttgaatg ccgtcggcaa accctcgggc agcgagcaaa taaagcgcag cgcattccaa
      901 agtttggtgt tgaaacgctt cgcctcgtcg cacacgcgtt catcaaatcg cagctcttgg
      961 gactccagcc gcatctgcat gagcgttccc atgcggaatc cgtcagcacc gtacttcgcg
     1021 atcatatcca acggatcgat cgcgttcccc agcgacttgc tcattttgcg tccctggata
     1081 tcgaacacga gcggcgtaat gaacactgtc gtaaacggta agcgtcccac aaaacgcagg
     1141 cccagcatca ccatgcgcgc gacccataag aaaatgatct cgcggccggt gatcatcacc
     1201 gcgttgggat accaatgctc gagttcgggc gtttgttcgg gccagcctaa gatcgaaaac
     1261 ggccacagcc cgcttgaaaa ccaggtgtcg agcgtgtcgg gatcgcgccg caggtcgtcg
     1321 gtgccgtgcc gttggcgcgc gagctgcttc gcttcctctt ccgagagcgc aacgatcaca
     1381 tcgtcatttg gcgtgtacca aaccggtagc tgatggcccc accagatttg gcgcgacacg
     1441 ttccaatcgc gaatgccttc gagccactgt tcgtacgtgc gcccgaaacg ttcgggtacg
     1501 aagaccagcg aaccgttcct gtacgcctca agcgcgggcc gcgccaagtc ctccatcttg
     1561 cagaaccact gcaacgacag taacggctcg ataacttcgc ccgtacgttc cgataccgga
     1621 accttgctta catacggttc ttcttttata agcgcaccgg tcgcagcaag atcgcgtgcg
     1681 acggctttac gcgcatcgaa gcggtccatc gcgcgatacg cctccggcac gtcacccgt
//
LOCUS       DATGBK010000284         1945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_26732, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000284 DATGBK010000000
VERSION     DATGBK010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26732"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..323)
                     /locus_tag="VKJ77_04215"
     CDS             complement(<1..323)
                     /locus_tag="VKJ77_04215"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HMC44511.1"
                     /translation="MHSLWDDKEAAQFRGELDLRVYSSRLLGRDKTLVLHGGGNTSVK
                     VVQKNLFGEDENVLYIKGSGWDLETIEAAGFAPVQLDYLLRLARLDALSDTQMVNQLA
                     THMLKS"
     gene            360..806
                     /locus_tag="VKJ77_04220"
     CDS             360..806
                     /locus_tag="VKJ77_04220"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011297598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC44512.1"
                     /translation="MPAQSFAIRICNWDEARPDARRIREMVFVREQGVPIELECDDQD
                     PHCDHALAFAADGSAVGTGRLLPDGHIGRMAVLKEWRGKGVGAVLLQALIEQARQRRH
                     VSVRLNAQAYAAEFYRRYGFEVSGSEFMEAGIPHVPMQRDLATAPV"
     gene            complement(790..1554)
                     /locus_tag="VKJ77_04225"
     CDS             complement(790..1554)
                     /locus_tag="VKJ77_04225"
                     /inference="COORDINATES: protein motif:HMM:NF017551.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NRDE family protein"
                     /protein_id="HMC44513.1"
                     /translation="MCLILIAHGAHSEFPLVIAANRDEYYQRPTARAAFWQDHPHILA
                     GRDLECMGTWLGVTRGGRFAALTNFRDPRERKTDAPSRGRLVSDFLVSDQEPREYLEN
                     VAMQAQRYNGFNLLAGDIDGVFYCSSREATVQKLSPGIHGLSNHLLDTPWPKVARGKQ
                     RLQAALAGEFDAEVILDLLHDREPAPEGELPDTGVGADLERVLSPALIVSPQYGTRAS
                     TAILFGEDGSVSFAERTILPGGNTGPTVTLRFRLER"
     gene            complement(1565..>1945)
                     /locus_tag="VKJ77_04230"
     CDS             complement(1565..>1945)
                     /locus_tag="VKJ77_04230"
                     /inference="COORDINATES: protein motif:HMM:TIGR03317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HMC44514.1"
                     /translation="PLITPATQEQFVPQMANMELIGAVNFQKGCYPGQEIVARTQYLG
                     QIKRRMVLAHVTEDVMPQPGDELFSSALDGQASGMVVNAQAAPDGGYDLLAVIQTASI
                     TQATVRFKSVTGPTLSIQPLPYPV"
BASE COUNT          355 a          596 c          614 g          380 t
ORIGIN      
        1 gacttgagca tatgggtggc gagttggtta accatctgcg tgtccgacag cgcatcgagc
       61 cgtgccaagc gtagcaggta atccaactgc accggcgcga aaccggccgc ctctatggtc
      121 tcaaggtccc agccgctgcc cttgatatac aggacgttct catcctcacc gaataggttc
      181 ttttgcacca ccttgaccga ggtgttcccg ccgccgtgca gcaccagagt cttgtcgcgt
      241 ccaagcaggc gcgaactata gacgcgcaag tcgagttcgc ctcggaattg cgccgcttcc
      301 ttgtcgtccc agaggctgtg catgtttcac tctcaaagga ggcgcgtatt atacccgcca
      361 tgccagcgca atcttttgcc atccgcatct gcaattggga cgaggcgcgc cccgatgcac
      421 gccgcatacg cgagatggtg ttcgtgcgcg aacagggtgt gccgatcgag ctggaatgcg
      481 acgaccagga tccgcactgc gaccatgcgc tcgcctttgc cgccgatggc tcggcggtgg
      541 gaacggggcg cctgctgccc gatggccaca tcgggcgcat ggcggtattg aaggaatggc
      601 gaggcaaggg cgttggcgcc gtgttgctgc aagcattgat tgagcaagcg cgccaacggc
      661 gccatgtgag cgtgcgcttg aatgcacagg cttatgccgc cgagttttac cggcgttacg
      721 gcttcgaggt ctcggggtcg gagttcatgg aggcaggcat accccacgtc ccgatgcaac
      781 gcgatctggc taccgctcca gtctgaagcg cagggtgacg gtagggccgg tattaccgcc
      841 aggcaggatg gtgcgttcgg cgaaactgac gctgccgtcc tcgccgaaca atatcgcggt
      901 ggaagcgcgt gttccgtatt gcggcgacac gatcaacgcc ggcgacagca cccgctccaa
      961 gtccgcgccg accccggtat cgggcagttc gccctcgggc gccggttccc gatcatggag
     1021 caggtccaag attacttcgg cgtcgaactc gcccgccagc gctgcctgca ggcgttgttt
     1081 gccgcgcgcc acttttggcc agggcgtatc gagtaggtgg ttcgacagcc catggatgcc
     1141 cggcgacagc ttttgcaccg tggcttcgcg actggaacaa tagaaaacgc cgtcaatgtc
     1201 gccggccagc aagttgaaac cgttgtaacg ctgcgcttgc atagcgacgt tctcgaggta
     1261 ttcgcgcggc tcctgatccg acacaagaaa gtcgctcacc agtcgaccgc gcgaaggcgc
     1321 atcggttttg cgctcgcgcg gatcgcgaaa attggtcagt gccgcaaaac gacccccacg
     1381 cgttacgccc agccaggtgc ccatgcactc caggtcgcgg ccggcaagga tgtgcggatg
     1441 gtcctgccag aacgcagccc tggccgtggg tcgttggtaa tactcgtcgc ggttggctgc
     1501 gatcaccagc ggaaattcgg agtgcgcacc atgcgcgatc aggatcaggc acattggagc
     1561 ggcatcagac cgggtagggc agaggctgga tgctcagcgt tggtccagtg accgatttga
     1621 aacgcaccgt ggcctgggtg atgctcgcgg tttggatcac cgccagtaga tcgtagccgc
     1681 catcgggcgc ggcttgggca ttgaccacca tgccgcttgc ctgtccgtcc agggcgctgc
     1741 tgaaaagctc gtcgccgggc tgcggcatga catcttccgt cacgtgcgcg agaaccatgc
     1801 ggcgcttgat ctggcccaga tactgggtgc gggcgacaat ttcctgcccc gggtaacagc
     1861 ctttctggaa attcactgcc ccgatcaatt ccatgttggc catctgcggc acgaattgct
     1921 cctgcgtcgc gggcgtgatc agcgg
//
LOCUS       DATGBK010000285         1634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_281182, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000285 DATGBK010000000
VERSION     DATGBK010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281182"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..510)
                     /locus_tag="VKJ77_04235"
     CDS             complement(<1..510)
                     /locus_tag="VKJ77_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacid CoA-transferase subunit B"
                     /protein_id="HMC44515.1"
                     /translation="MKKLTRDEMAKRVARDIQEGAYVNLGIGVPTLVANHLAADREIF
                     LHSENGLLGMGPAPEKGAEDDELINAGKQHVTLLTGGAYFHHADSFAMMRGGHLDICV
                     LGAFQVSAKGDLANWHTGAPDAIPAVGGAMDLAIGAKRTHVLMEHLTKSGESKIVESC
                     SYPLTGIACV"
     gene            complement(600..1301)
                     /locus_tag="VKJ77_04240"
     CDS             complement(600..1301)
                     /locus_tag="VKJ77_04240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacid CoA-transferase subunit A"
                     /protein_id="HMC44516.1"
                     /translation="MINKIFDSLSSAVKDVQDGATVMIGGFGTAGMPSELIDALIEQG
                     ARELTIVNNNAGNGEIGLAALLKAKRVRKIICSFPRQSDSQVFDGLYRAGELELELVP
                     QGNLAERIRAAGAGIGGFFTPTAYGTKLAEGKETRFIDGRHYVLEAPLHADFALIKAF
                     KGDRWGNLVYRKTARNFGPIMAMAAKTAIVQVSQVVPLGALDPEDIVTPGIFVQRVIE
                     VPQAVHAAELAAKVA"
BASE COUNT          297 a          518 c          458 g          361 t
ORIGIN      
        1 cacgcaggcg atgccagtca gcgggtagct gcacgattcg acgatcttgc tttcacccga
       61 cttggtgaga tgctccatca acacgtgggt gcgcttcgca ccgatggcca ggtccatcgc
      121 gcccccgacg gcaggaatgg catcgggcgc gcccgtgtgc cagttcgcca gatcgccctt
      181 ggccgatacc tggaacgcgc cgagcacgca gatgtcgagg tggccgccgc gcatcatcgc
      241 gaacgaatcg gcgtggtgga aatacgcgcc gccggtgagc agcgtcacgt gttgtttgcc
      301 ggcgttgatc agttcgtcgt cttccgcgcc cttctcgggc gccgggccca tgcccagcag
      361 accgttttcg ctatgcagga agatctcgcg atccgccgcg agatggttgg cgacgagcgt
      421 cggcacgccg atgcccaggt tcacgtacgc gccttcctga atgtcacggg caacgcgttt
      481 cgccatttcg tcacgagtca gttttttcat gtcgatgtcc ttgcttgatg cattcgttgt
      541 tgcggcttga gctgagaagc gagccttgaa aatcccgctt gcactaaaga gtgctctaat
      601 taagccactt tcgccgccag ctctgccgcg tgcaccgctt gcggcacttc gatcacgcgc
      661 tgcacgaaga tgcccggcgt cacgatgtct tccggatcca gcgcgccgag cggcacgact
      721 tgcgagacct gcacgatcgc tgttttcgcg gccatcgcca tgatcggccc gaagttgcgc
      781 gccgtcttgc gatacaccag gttgccccac cgatcgccct tgaatgcctt gatcaacgcg
      841 aaatcagcgt gcaacggtgc ttcgagcacg tagtggcggc catcgataaa acgcgtctcc
      901 ttgccttcag ccagcttcgt tccgtaggcc gtgggcgtaa aaaatccacc aatgcccgcg
      961 cctgccgcgc gaatgcgctc agcgaggttg ccttgcggca cgagctcgag ttcgagttcg
     1021 cccgcgcgat acaagccgtc gaacacttgc gaatcgctct ggcgtggaaa cgagcagatg
     1081 atcttgcgca cgcgtttcgc ttttaacagc gctgcgaggc cgatctcgcc attgcccgca
     1141 ttgttgttca cgatggtcag ttcgcgcgcg ccctgctcga tcagcgcatc gatcagttcc
     1201 gacggcatgc ccgccgtgcc gaacccaccg atcatcacag tcgcgccgtc ctgaacgtcc
     1261 ttcaccgctg aactcagcga gtcgaaaatc ttgttgatca tgccgtctct tcctttgacg
     1321 agtgccgaat gcatcgaagc cgcattgcaa ctgaatcaaa gcgcgccgga agacttgatt
     1381 ttgaccggcc gcgcttgcat ttttaagttc gctatgcgaa catcgattcg tttagcgaac
     1441 aaacgtatgg tattcccgca ttcgttgcgc tgtcaatgat cctcgggttt gtaccgatgc
     1501 gctcgcgatt tgcccgactt ttaggaccaa acagcgatga ctacgtcccc tgccgaagcc
     1561 gatctacctg attcggaaac accctcgcgg cccggcgatg cttatgtgca atcgttcgcg
     1621 cgcggtttat cggt
//
LOCUS       DATGBK010000286         1885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_304084, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000286 DATGBK010000000
VERSION     DATGBK010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304084"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(239..994)
                     /locus_tag="VKJ77_04245"
     CDS             complement(239..994)
                     /locus_tag="VKJ77_04245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar regulator YcgR PilZN domain-containing
                     protein"
                     /protein_id="HMC44517.1"
                     /translation="MNMNPPNGSDIVDDESDLPDFGRRNPLEIGVSLRNLVNRADFLT
                     VNHGTGQIVTRLLDVNPSARTFIFDWGGIPEQNQAMLRTENLTFHASPDGIRVEFATG
                     TPREIVFEGHPAFEADFPPVLFYMQRREYFRVEAPVLDPYICSGELQNGERFRFEVND
                     LSLGGVALRTMDERVASMEVGLILRSVELHFSNPGKIVLDLQLMSNRQTVNSRGDLRY
                     TLGFKFMSLPGSAENTLQRLITQLEMKRRSLAR"
     gene            complement(1402..>1885)
                     /gene="flgJ"
                     /locus_tag="VKJ77_04250"
     CDS             complement(1402..>1885)
                     /gene="flgJ"
                     /locus_tag="VKJ77_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018418760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar assembly peptidoglycan hydrolase FlgJ"
                     /protein_id="HMC44518.1"
                     /translation="LTPPARGVGSDKVAAFVDRLAAPAQAASSATGIPARFIIGQAAL
                     ESGWGKREIKNADGSSSHNVFGIKATSDWSGKTTSAVTTEYVNGKSQKVVEKFRSYDS
                     YEDALTDYASVLKSNPRYAPVVEASRDAAGFAHGMQKAGYATDPQYAKKLISIMRHIA
                     "
BASE COUNT          351 a          571 c          562 g          401 t
ORIGIN      
        1 aatcccggcg cggtgagtcg gggcgcgcgt ggtttgagcg cagtgcgcgc gcagatgaaa
       61 tccgcgcgta ccacgccatg acggattatt ccccggcatt gatcggagca atcggtgaag
      121 cagcgggggg attgggcgtc agttcgccga atggaagggg cgttacgggg ggaagagccg
      181 ggtactgcgg cgcgggcgga gcgagcacgg ggctcgccac cgcatcaacg catcaacgtt
      241 atcgcgccag tgaccggcgc ttcatctcga gttgcgtaat caagcgctgc agcgtgtttt
      301 ctgctgaccc gggcaagctc atgaacttga agccgagcgt atagcgcaga tcgcccctcg
      361 aattcactgt ttgtcggttc gacatcagct gcaggtcgag cactatcttg cccgggttgc
      421 tgaagtgcag ttccacggaa cgcaggatca agccgacttc catcgatgca acccgctcgt
      481 ccatggtccg cagcgcaacg ccgcccagcg agaggtcgtt cacttcgaag cgaaaacgct
      541 cgccattctg cagttcgccg ctgcagatgt acggatcgag caccggcgct tccacgcgga
      601 aatactcgcg ccgctgcatg tagaacagca ccggcggaaa atccgcttca aacgccgggt
      661 gcccttcgaa aacgatttca cgcggcgtac cggtggcgaa ttcgacgcgg atcccgtcgg
      721 gactcgcatg gaacgtcagg ttttccgtgc gcagcatggc ctggttctgc tcgggaatgc
      781 caccccagtc gaagatgaac gtgcgcgcgc tcgggttcac gtcgagcagg cgggtaacga
      841 tctgccccgt gccatgattg acggtcagga aatctgctcg attaacgagg ttgcgtaggg
      901 aaacaccgat ttccagcgga ttgcgccggc cgaaatcggg aaggtcggac tcgtcgtcta
      961 cgatgtcgga accgtttggc ggattcatgt tcatggggct tgccgtgttc gtttgctcgc
     1021 tcgcctctcg attcccgaga ctgttcgagc gtccaaccgg atcctgtgga tccggcactt
     1081 cgatgtttca tttagcggca accgggatcg aatatttagg gttggttgta aaaaaacttc
     1141 cctgatcccg tatccggcga ccgaaaacgt tcgcaaagcg cgcaaatcga aacgaaccag
     1201 cacattctct ccatttcgat gcttcccggc cagccggctg ctttccggac gcaccatgcg
     1261 cccgttcctc gccgtcagcc tgcatcgtct tttattgcga cattggcccc gtcgcttttg
     1321 acacattact cgtaatacgt ttcgtctacc tatattagat acagcaaaag gtgcgccagt
     1381 gcgcactcgg ttcacactca atcaagcaat gtgccgcatg atcgaaatca actttttagc
     1441 gtattgcggg tcggttgcat atcccgcttt ctgcattccg tgcgcaaaac cggccgcatc
     1501 gcgcgaggct tccacgactg gcgcgtagcg cggattgctc ttgagcacgc tggcgtagtc
     1561 ggtgagtgcg tcctcgtacg agtcgtacga gcggaatttc tccaccactt tctgcgattt
     1621 gccgttcacg tattccgtag tcaccgcgct cgtggtcttg ccgctccagt cgctggtcgc
     1681 cttgatgccg aacacgttgt ggctcgagct gccgtcggca ttcttgatct cgcgcttgcc
     1741 ccagccggac tcgagcgccg cctggccgat gataaatcgc gccggaatcc cggtcgccga
     1801 gctggcggcc tgcgccggcg cggcgagacg gtcgacgaac gcggcgacct tgtccgagcc
     1861 cacgccgcgt gcgggcggcg tcagc
//
LOCUS       DATGBK010000287         3126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_258078, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000287 DATGBK010000000
VERSION     DATGBK010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3126
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258078"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VKJ77_04255"
     CDS             complement(<1..380)
                     /locus_tag="VKJ77_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006409106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HMC44519.1"
                     /translation="MWPDVRKIVALAWPVLIGQLAIIAFAVIDTAMVGRYSATDLAAL
                     GLGSSIYISVYIGLTGILTALQPIVGQLFGARREAEIGEEVRQALWLAAVLSVIGFVC
                     LYFPQPLLSIADAPPALHERTLAY"
     gene            complement(383..2146)
                     /locus_tag="VKJ77_04260"
     CDS             complement(383..2146)
                     /locus_tag="VKJ77_04260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HMC44520.1"
                     /translation="MRNVVRLTASATSALPRWLLLAICIVYASFGLFGRDPWKNEDAA
                     GFGVMWTMANGSVKDWLLPNLVGKALTGDGPFMYWFGAGFIRLLSPWVDASNASRVVT
                     GLLFCIACAFVWYTAYLLGRRDEAQPFKYAFGGEPEPRDYGRTLADGALLILLACFGL
                     AERGHETTPQLAQFAGTAMLLYGLVRSCDKPIQGAVIWGAAIGFVGLSSSPVLVLALL
                     ICTLAMTVIVREVRPFYLVVLGVPIAVILIGAWVWPVLHFYPDDGEWWLRQWWRNSFD
                     SFSGSPIQALSYALKNLPLFTWPAWPLAIWTFVSWSGLRRSPHVAVPLSVIGPLLVLV
                     ILQSHQSNRLFMLLLPPLSVLATFALPTLKRGAINAIDWFAMLSFTLLATFVWLVWPA
                     GLFGFPAPLARNLSRLAPGFQPEFKILSFVCAVAVTICWFSLARWRLARHPKVLWRSV
                     VLSSAGTTLMWVLLMTLWLPVVNYSRTYRDVAEQIADHLPPDYTCISPVRLGDAQIAT
                     FAYFGGMHFAFDEDCDVILRQDTQDYGEPSSISAFEWKLVWEGRRVADRDERFRLYVR
                     IERPVAPVKRPRPKSLHRGSD"
     gene            complement(2432..2686)
                     /locus_tag="VKJ77_04265"
     CDS             complement(2432..2686)
                     /locus_tag="VKJ77_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HMC44521.1"
                     /translation="MKEGIHPNYREVLFVDMSNDFKFITRSTINTRETGEFEGKTYPL
                     AKIEVSSESHPFYTGQQKIMDTAGRVEKFNKKFAAFSAKK"
     gene            complement(2873..>3126)
                     /locus_tag="VKJ77_04270"
     CDS             complement(2873..>3126)
                     /locus_tag="VKJ77_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006496402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-dependent peptidase"
                     /protein_id="HMC44522.1"
                     /translation="FDHAYDHFCAQVDAVPPRRWGRFERESLIDPYAADHPSEFFAVC
                     SEALFVQPVAFEREYPELYRLLARYYRQDPAGVGALEQE"
BASE COUNT          669 a          961 c          975 g          521 t
ORIGIN      
        1 aaataggcga gggtgcgttc gtgcagggcg ggtggcgcat cggcgatgct cagcaaaggc
       61 tggggaaaat acaggcagac gaagccaatc accgacaaca ccgccgccag ccatagcgcc
      121 tgccggactt cctcgccaat ctcggcttcg cggcgcgcac cgaacaattg cccgacgatg
      181 ggctgcaacg ccgtcaggat gcccgtcaaa ccaatataga cagagatgta gatcgacgaa
      241 ccgaggccga gcgccgcgag atccgtggcg gaatatcggc cgaccatggc cgtatcgatc
      301 acggcgaacg cgatgatcgc caactggcca atcagcaccg gccacgccag ggccacgatc
      361 ttgcggacat ccggccacat gctcagtcgc ttccgcgatg cagcgacttc ggtcgcggcc
      421 gcttgaccgg agccaccggg cgctcgatac gcacatacag ccggaaccgc tcgtcccggt
      481 cggccacgcg ccggccttcc catacgagct tccactcgaa cgccgagatc gacgatggtt
      541 cgccgtaatc ctgcgtgtcc tggcgcagga tcacgtcgca gtcttcatcg aaggcgaaat
      601 gcatgccgcc gaaataggcg aaggtcgcaa tttgcgcatc acccagacgc accggggaaa
      661 tgcaggtgta gtcaggcggc aaatgatcgg caatttgttc ggctacgtcg cgatacgtcc
      721 ggctgtagtt caccaccggc agccacaacg tcatcagcag cacccacatc agcgtggttc
      781 ccgcactcga tagcacgacg ctgcgccaca gcaccttcgg atgacgcgcg agacgccagc
      841 gcgcgagcga aaaccagcat atcgtcacgg caaccgcaca cacgaacgac aagatcttga
      901 attcgggctg gaaaccaggc gcgagacggg agagattgcg cgcgagcggc gcggggaaac
      961 cgaacaggcc cgcaggccat acaagccaga cgaacgtggc gagcagcgtg aaactcaaca
     1021 tcgcgaacca gtcgatggcg ttgatcgccc cgcgcttgag cgtgggcagc gcgaacgtgg
     1081 ccagcacgga caacggcggc agcaacagca tgaaaaggcg gttcgactga tgactttgca
     1141 ggatcaccag caccagcagc ggcccgatca ccgatagcgg cacagccacg tgcggcgagc
     1201 gccgcaggcc gctccagctt acgaaggtcc agatggcgag cggccacgct ggccaggtga
     1261 agagcggcag gttcttgagg gcgtaggaga gtgcctggat cggcgaaccg gaaaacgagt
     1321 cgaagctgtt acgccaccat tggcgcagcc accattcgcc gtcgtccggg tagaagtgca
     1381 gcaccggcca cacccatgcg ccgatcagga tcactgcgat gggcacgccg agcacgacca
     1441 ggtagaacgg ccgcacttcg cgcacgatga cagtcatggc gagcgtgcag atcagcagcg
     1501 ccagtaccag caccgggctg ctcgacaaac ccacgaagcc gattgccgcg ccccagatca
     1561 ccgcgccctg gatcggcttg tcgcaactgc gaacgaggcc gtagagcagc atggcggtgc
     1621 cggcgaactg agcaagctgg ggcgtggttt cgtggccgcg ttcggccagg ccgaagcagg
     1681 cgagcaggat cagcagcgcg ccatcggcga gtgtgcggcc ataatcgcgc ggctcgggct
     1741 cgccgccaaa ggcgtatttg aacggttgtg cctcatcgcg ccggccgagt agatacgccg
     1801 tgtaccagac gaacgcgcag gcgatacaaa acagcaatcc ggttaccacg cgcgatgcat
     1861 tgcttgcatc gacccatggg ctcagcaggc ggataaaacc tgcgccgaac cagtacatga
     1921 acgggccgtc gccggtgagc gccttgccta ccagattcgg cagcagccag tctttcacgc
     1981 tgccgttggc catggtccac atcacgccga agcccgctgc gtcctcgttt ttccacggat
     2041 cccggccgaa cagtccgaac gacgcgtaga cgatacaaat ggcgagcagc agccagcgcg
     2101 gcagggcgct ggtggcggag gcggtcagac ggacgacatt tcgcatgcgt ttgggcgagg
     2161 gaacagaact gatggagcgc cgatggagca atgcggcggc gcttgggtcg tgcatgacac
     2221 gcgaatctcg tgccttggcg ggtcgtgcga tttttaccga atccggcatt gtagacgtgc
     2281 ggcgtcgcgc gcgtcattgc ggcgcttgtc agcgaggggg cgtggggcga gtttgccccg
     2341 acgcatgggc cagagacggg gggtacagac gaaaaaaagg cagctctcgc tgcctttctt
     2401 cgaatccagc cttggctgct ttctcgacta attacttctt tgccgagaat gctgcgaact
     2461 tcttgttgaa cttctcgacg cggccggccg tgtccatgat cttttgctga ccggtgtaga
     2521 acggatgcga ttccgacgac acttcgatct ttgccagcgg gtacgtcttg ccttcgaact
     2581 cgccggtttc gcgcgtgttg atggtcgaac gtgtgatgaa cttgaagtca ttcgacatgt
     2641 cgacgaacag cacttcgcgg taattcgggt gaatgccttc tttcatggtc tttccttagt
     2701 atctgttggt agccagccca cccggtttgc gggttttgcg cgtgcatgca agccaatctt
     2761 gcatgccgat cctgcgagcg cgagccactt gcctgaggtc gaaaaacggg gattatgcca
     2821 gaaaatcagc cgtttggcat gttttcaggg cttctggacc gacccaccgc gttcattcct
     2881 gctccagcgc gcccacgccc gccgggtctt gccggtaata ccgcgcgagc aagcgataca
     2941 actccggata ttcccgctcg aacgccacgg gctggacgaa caaagcctcg ctgcagaccg
     3001 cgaaaaactc cgacggatgg tctgcggcgt aaggatcgat cagcgattcg cgttcaaacc
     3061 ggccccagcg gcgcggggga acggcatcga cctgagcgca gaaatggtca taggcatgat
     3121 cgaaga
//
LOCUS       DATGBK010000288         2106 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_188679, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000288 DATGBK010000000
VERSION     DATGBK010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188679"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..719)
                     /locus_tag="VKJ77_04275"
     CDS             complement(<1..719)
                     /locus_tag="VKJ77_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011350117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44523.1"
                     /translation="MAKVFAMLVRNELLGFMRSRSSLFWALVFPVFLLTVMLFAFGHS
                     SSLGQVDVAFAGAPDTTYAQACRREIETKLSQSGTVQPRFVAAGATASSAERLTVVLA
                     ATDGQPTRVRYDFNGSLGVRAASRIVEMALARCTAEQRGIHTGELVRFENSLPAQRPF
                     DYGTFFATGILIMSFMAIGLNSTAASIATLRERNTFKLYVCFPVSRMVFLGALIAARM
                     VMMALSALVLLLVARFGFGIAL"
     gene            complement(712..1728)
                     /locus_tag="VKJ77_04280"
     CDS             complement(712..1728)
                     /locus_tag="VKJ77_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006498000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC44524.1"
                     /translation="MHQTFLASVRAALDPMRDFRWPQTSGSRRALNPWDANCALSAES
                     IDVQSDAFRFAAQRVAFRRGAVTAIVGPNGAGKSTLLETLLGFRRGVGERLRILDVPA
                     DRFMRGSAMLRRLGAQLQRVEYPDHAQVAEIVALHRALYRRQEPHIAAALGLDELRGR
                     PYRVLSKGQRQRIDLYIALAHQPELIVLDEPFTGLDKHYAGVVTGLLRGRPDGASVAM
                     ICHSGEELAAVDDIVWVHGGGVRYQGAKQALKERLVGELRGLMHCDDQAQAVALHERL
                     RMLPSVQRVSTPQPLQVEVFGNASLHADVRDVIADAGIRHIELAPSTDSDLLRACAQG
                     KHHG"
     gene            complement(1744..>2106)
                     /locus_tag="VKJ77_04285"
     CDS             complement(1744..>2106)
                     /locus_tag="VKJ77_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006498001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HMC44525.1"
                     /translation="GSVTVSHVGPALLAHPRTGDVVWFNQASAQHPNQRSMGELSFRY
                     LERVFRERASFPYEIRLGNGEPISLADLDPVYDALDAETRTFGWQAGDFLIIDNMLVA
                     HGRNPFTGSRDIQVMLLD"
BASE COUNT          407 a          667 c          671 g          361 t
ORIGIN      
        1 agcgctatgc cgaaaccgaa gcgtgcgacc agcagcagga ccagtgcgga gagcgccatc
       61 atcaccatgc gtgcggcgat caacgcgccg aggaacacca tccgcgagac tggaaaacat
      121 acgtagagct tgaatgtgtt gcgctcccga agcgtcgcga tgctggcggc ggtcgagttc
      181 aggccgatcg ccatgaacga catgatcagg atgccggtgg cgaagaaagt cccgtagtcg
      241 aacggacgtt gcgcgggcag gctgttttcg aaacgcacga gttcgccggt atgaatgccg
      301 cgttgttcgg cggtgcaccg tgccagcgcc atttcgacga tccgcgatgc ggcccgtact
      361 ccgagcgaac cgttgaagtc gtaacgcacg cgggtaggtt gtccgtcggt ggcggctagt
      421 accacggtca ggcgttcagc gctcgacgcc gttgccccgg cagccacaaa acgcggctgc
      481 accgtaccgc tttgcgacag cttcgtttcg atttcgcggc ggcaagcctg cgcgtaggtc
      541 gtgtccggcg cgccggcgaa cgcgacatcc acttgcccga gcgaactcga atggccaaac
      601 gcgaacagca tcactgttaa caggaacacg ggaaacacga gtgcccagaa gagcgatgaa
      661 cggctgcgca tgaaaccgag caactcgttg cgcaccagca ttgcaaatac tttagccatg
      721 atgctttcct tgtgcgcaag cacgcaacag atcgctgtcg gtgcttggtg cgagttcgat
      781 gtggcggatc cccgcgtcgg caatgacgtc gcgcacgtcg gcatgcagcg aagcgttacc
      841 gaatacctcc acctgcaagg gctgtggcgt gctgactcgc tggacgctcg gcagcatcct
      901 cagacgctcg tgcagcgcca cggcctgcgc ttggtcgtcg caatgcatga ggccgcgcag
      961 ctcgcccacc agccgctcct tcagtgcctg tttcgcgcct tgataacgaa cgccgccgcc
     1021 gtgcacccac acgatgtcgt caaccgccgc gagttcttcg ccggagtggc agatcatcgc
     1081 cacgctcgca ccgtccggcc tgccacgcag caacccggtg acgacgcccg cgtagtgttt
     1141 gtcgagaccg gtgaagggtt catcgagcac gatcagctcg ggctggtgcg cgagcgcgat
     1201 atacaggtcg atgcgctgcc tctgtccttt cgacaacacg cgatacggcc gtccgcgcag
     1261 ttcatcgagc ccgagtgcgg cagcaatatg cggttcctgc cgtcggtaca acgcgcgatg
     1321 caacgccacg atctcagcga cctgcgcatg gtccggatat tcaacacgct gcaactgcgc
     1381 gccgagccgc cgcaacatcg cgctgccacg catgaagcga tcggcgggca cgtcgagaat
     1441 gcgaaggcgt tcgcccacgc cgcgccggaa ccccagcagc gtttcgagca gcgtgctttt
     1501 acctgcgccg ttcggtccga cgatagccgt taccgcaccg cgccggaacg cgacacgttg
     1561 ggctgcgaat cgaaacgcat cggactggac gtcgatggat tcggcgctta acgcacagtt
     1621 cgcgtcccat gggttgagcg cgcgccggct gcccgatgtc tggggccagc ggaagtcgcg
     1681 catggggtcg agcgctgcgc gcacggaggc gaggaaggtc tggtgcatat caatcggtct
     1741 cggttagtcg agcagcatga cctggatgtc ccgcgagccc gtgaacgggt tgcggccatg
     1801 ggcgaccagc atgttgtcga tgatcaggaa gtcgcccgcc tgccagccga aggtccgtgt
     1861 ttcagcatcc agggcgtcgt agaccggatc gagatcggca agcgatatcg gctcgccgtt
     1921 gcctagccgg atctcgtagg gaaacgacgc gcgttcgcga aaaacacgct ccaggtaacg
     1981 gaagctcagc tcgcccatgg agcgctgatt cggatgctgc gcgctcgcct ggttgaacca
     2041 gacgacatcg ccggtgcggg ggtgcgcaag cagcgcaggt cccacgtgtg aaaccgtcac
     2101 gctgcc
//
LOCUS       DATGBK010000289         2422 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_234938, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000289 DATGBK010000000
VERSION     DATGBK010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234938"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1190
                     /locus_tag="VKJ77_04290"
     CDS             <1..1190
                     /locus_tag="VKJ77_04290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HMC44526.1"
                     /translation="ATPNTGWVLSSPQSRFAVQAVERFQPLFHLLNGDLCYANLNPAH
                     QPEVWRDFGNNAQTSAANRPWMPCPGNHELEFNNGEQGLDSYLARYTLPENGTRFPGR
                     WYSFRVSSVLFVSLDADDVVYQDAAAFVAGPGPLVPAASTGNPPIAPGTSLYVRGYSG
                     GEQTRWLGETLRKAAEDKGIDWIVVQMHQDALTSSKTGNGSDKGIREAWLPLFDRYGV
                     DLVLCGHDHDYERSYPVRGCNHHAGTDAVTGEPVDTLQPRPVITSNPADGAFDTSQGT
                     IHLILGGGGTSAPLDVYGLDAGTGNVQAKVFTKPNRPVPGTAANTFVRQPADALEDAI
                     WSAQRDTGTGYGIAVFDHDPGEPGGKTTITMNYYHAPGADQTPTANYELFETITFSKK
                     RRG"
     gene            complement(1255..>2422)
                     /locus_tag="VKJ77_04295"
     CDS             complement(1255..>2422)
                     /locus_tag="VKJ77_04295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HMC44527.1"
                     /translation="GMTLSVISYGIVNSIISRYAIRTGLSVALFSRVLFGGAGAALAT
                     LIFFATAIYYAVFEGSVIAVAAHNLFPALDYKWAALIVVCYSVPLVFGSVQHWLDKFN
                     GVLLPFYLLGLLAAVVLTTHEYGYNAAWLDFGPKGTIPANGWWNCFVYYMGVWVLMMF
                     TFDYARFGRQKDAPYHGRFNFGMPFYLVTFLLNGAVGIYLVSTIPGLGPLSEVSVVLA
                     LLKLMGIWGLLFVWVTQSRINTANYYLAAINMQAFFRKVAGLHAPKFVWALVVGVVVY
                     ALMMADVFSKILQALAYQGIFVVAWVGVALAHILSTRVDTLLGNEIECRDSHVPAFNP
                     GGLTAWFAGALAGLLLMNMPGALQSFSAPATFVVSWLVYRAMLVAAKRTWFVRG"
BASE COUNT          520 a          745 c          733 g          424 t
ORIGIN      
        1 tcgccacgcc gaataccggc tgggtgctct cgtcaccgca gagccgcttc gccgtgcagg
       61 cagtggagcg gttccagccg ctgtttcact tgctcaatgg cgatctctgt tatgccaacc
      121 tgaacccggc acatcagccc gaggtatggc gcgacttcgg caacaatgcg cagacctcgg
      181 cggccaatcg cccctggatg ccttgcccgg gcaaccatga gctggaattc aacaacggcg
      241 agcagggact tgactcgtat ctggcgcgct atacattgcc ggagaatggc acccgctttc
      301 ccggtcgctg gtacagcttt cgtgtgagtt cggtgctgtt cgtctcgctc gatgcggacg
      361 acgtggtcta ccaggacgcg gctgctttcg tcgcgggtcc gggtccgctg gtgccagctg
      421 caagtacagg caatccgccg atcgccccgg ggacgtcgct ctacgttcgc ggctatagcg
      481 gtggcgagca gacacgctgg ctaggggaga cgttgcgtaa agcggccgag gacaagggca
      541 tcgactggat cgtcgtccag atgcaccagg acgcgctgac ttcttcgaag actggcaatg
      601 gttccgacaa gggtatccgg gaggcgtggc tgcccttgtt cgaccgctat ggcgtcgatc
      661 tcgtactctg cggccatgac catgattacg agcgcagcta tcccgtgcgc ggttgcaatc
      721 accatgcggg cacggatgcc gtgacgggcg aaccggtgga tacgctccag cctcgtccgg
      781 tcattacgtc gaacccagct gacggcgcct tcgataccag ccagggcacg atccacctga
      841 tcctgggcgg tggcggcacg agtgcgccgt tggatgtcta tgggctggat gccggaaccg
      901 gcaatgtgca ggcaaaggtg ttcaccaagc ccaaccggcc ggtacccggg accgcggcga
      961 acacgttcgt gcgccagccc gccgatgcgc tggaagacgc catctggtcg gcgcagcgcg
     1021 ataccggtac cgggtatggc attgccgtgt tcgatcatga tccgggtgag ccgggcggca
     1081 agaccaccat tacgatgaac tactatcacg cgccgggtgc ggatcagacg ccgaccgcga
     1141 actacgaact gttcgagacg attacgtttt cgaagaagcg tagaggctga ttcgtggtct
     1201 tttagctggc gagcgttcgg cgcggccttt actcggccgc gccttagcca caccttaacc
     1261 gcgtacgaac caggttcgtt tagccgccac gagcattgcc cgatagacca gccacgacac
     1321 gacgaacgtg gctggcgcgg agaacgattg cagcgcgcca ggcatgttca tcagtagtaa
     1381 gcctgccagc gcgccggcga accacgccgt caacccaccc ggattaaaag ctggtacatg
     1441 tgaatcgcgg cattcgattt cgttgccgag caaggtatcg acgcgggtcg acaggatatg
     1501 ggcaagcgca acgcccaccc aagccaccac gaagatgccc tgatacgcga gtgcctggag
     1561 gatcttcgaa aacacgtcgg ccatcatcag cgcatacacc accacgccca ctacgagcgc
     1621 ccacacgaac ttcggggcgt gcaggcccgc gaccttccgg aagaaagctt gcatgttgat
     1681 cgctgcaagg tagtagttcg ccgtgttgat acgcgattgc gtgacccaca cgaacagaag
     1741 gccccatatc cccatcagct tcagcaacgc aagcaccacc gacacttccg agagcggtcc
     1801 caacccaggg atcgtgctga ccagatagat ccccactgcg ccgttgagca ggaacgtcac
     1861 gaggtagaac ggcatgccga aattgaaacg gccgtgatag ggcgcatctt tctggcggcc
     1921 gaagcgtgca tagtcgaacg tgaacatcat caagacccag acgcccatgt agtacacgaa
     1981 gcaattccac cagccattcg cggggatcgt gcccttggga ccgaagtcga gccatgcagc
     2041 gttgtagcca tactcgtggg tcgtcaggac tactgctgcc agcaggccga gcaagtagaa
     2101 gggcagcagc acgccgttga acttgtcgag ccagtgctgg acactgccga acaccagcgg
     2161 cacgctgtag caaaccacga tcagcgcagc ccacttatag tccagcgcag gaaagaggtt
     2221 gtgcgctgcg actgcgatca ctgagccttc gaacaccgcg tagtagatcg cagtcgcaaa
     2281 gaagatcagc gtggcgagcg ccgcgcccgc gcctccaaaa agcacgcgcg agaacagcgc
     2341 gaccgataat ccggtacgga tcgcgtagcg gctgatgatc gaattgacaa tgccatatga
     2401 gatgaccgaa agcgtcatgc cg
//
LOCUS       DATGBK010000290         3579 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_188729, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000290 DATGBK010000000
VERSION     DATGBK010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3579
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188729"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..590
                     /gene="queA"
                     /locus_tag="VKJ77_04300"
     CDS             <1..590
                     /gene="queA"
                     /locus_tag="VKJ77_04300"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051075 - S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HMC44528.1"
                     /translation="PDSFDETRYQTVYAANPGAVAAPTAGLHFDPALFAALDARGVER
                     ATLTLHVGAGTFQPVRVENLAEHKMHSEWYRLPQELADKIMATKARGNRVIAVGTTSL
                     RALEAAARDAAEAGRPLAETSAETDIFITPGYQFRVVDRLVTNFHLPKSTLMMLVSAF
                     AGMDAIRAAYAHAIDERYRFFSYGDAMLLTRQTAA"
     gene            715..1902
                     /gene="tgt"
                     /locus_tag="VKJ77_04305"
     CDS             715..1902
                     /gene="tgt"
                     /locus_tag="VKJ77_04305"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HMC44529.1"
                     /translation="MTEASNAADTLETPTQPANGLKFELITTDGQARRGRVTLNHGVV
                     ETPIFMPVGTYGTVKAVAPRELEEMNAQIILGNTFHLWLRPGLETIAAHGGLHRFMNW
                     QRPILTDSGGFQVFSLGDLRKITEDGVTFASPINGDKLFLSPEISMQIQKVLNSDIVM
                     QFDECTPYATNDVPTPHQDAADSMRMSMRWAKRSVDEFAKGDNPNALFGIVQGGMFED
                     LRDESLAGLADIGFHGFAIGGLSVGEPKEDMMRVLEHIGPKLPADKPHYLMGVGTPED
                     LVAGVASGVDMFDCVMPTRNARNGWLFTRFGDVKIRNAAHKNSLKPLDETCGCYTCRN
                     FTRGYLHHLHRVGEILGSQLNTIHNLHYYLQLMQEIRDSIENHAFDAFVKQFKEDRAR
                     GID"
     gene            2130..2396
                     /gene="yajC"
                     /locus_tag="VKJ77_04310"
     CDS             2130..2396
                     /gene="yajC"
                     /locus_tag="VKJ77_04310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HMC44530.1"
                     /translation="MSFLPLILMFAVLYFIMIRPQMKRQKEHRNMLGAMAKGDEVVTN
                     GGIVGKVTKVTDAYVGVEIAEGTEITIQKAAVTTILPKGTIKSL"
     gene            2532..>3579
                     /locus_tag="VKJ77_04315"
     CDS             2532..>3579
                     /locus_tag="VKJ77_04315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012363128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HMC44531.1"
                     /translation="MNRYPLWKYAVMLVALVIGLVYTLPNFFGEAPAVQVSSGKATVK
                     LDSTTLANIENALAADKVTPDEVTFDNSSLNANIRVRLKDTDTQLRVKDLLQKTLNSD
                     PSDPQYIVALNLQAASPRWLSALHALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSNA
                     ADARALLRDKNIRDGGVNRVDQSVVVNFADQAAADAARTTLSNGLNELQWATRQGGDG
                     YQVVGTFTPAAQKLAEDSALKQNIVTLHNRVNELGVSEPVIQQQGSDRIVVELPGVQD
                     TAKAKDIIGRTATLEARLADPTNTHPGPNDPVPPGDELFTQGNTGPTLVRKQVIFTGD
                     RIIDASSGFDEHQRP"
BASE COUNT          779 a         1093 c         1041 g          666 t
ORIGIN      
        1 atcccgattc cttcgatgaa acccgctacc agacggtcta cgccgcaaac cccggtgcag
       61 tcgcggcgcc gactgccggc ctgcacttcg acccggcgct ctttgccgcg ctcgacgcac
      121 gcggcgtgga gcgcgcaacg ctgacgctgc acgtgggcgc aggcacgttc cagccggtgc
      181 gcgtggagaa tctcgcggaa cacaagatgc atagcgaatg gtatcggctg ccgcaggaac
      241 tggcggacaa gatcatggcg acgaaagcgc gagggaaccg tgtgattgcg gtcggcacga
      301 cttcgctacg ggcgctcgaa gcggccgccc gcgatgcagc cgaagctggc cgaccgctcg
      361 ctgaaaccag cgccgaaacg gacattttca tcacgccggg gtatcaattc cgcgtggtcg
      421 accggcttgt aacgaacttc catttgccga agtcgacgct gatgatgctg gtctccgcat
      481 tcgccggcat ggacgcgatt cgcgcggcgt acgcgcatgc gattgacgag cggtatcgat
      541 ttttcagtta cggcgatgcg atgctgctca ctcggcaaac ggcggcttga gcaacaccgt
      601 aggcaacgcg gccccaaaac aagaacgatt gaacgcgcca cgtattattg tggcgcccaa
      661 aacaccttac ccatttgcgc cggactgtcc tccggtggca caggagcttt ttgaatgacc
      721 gaagcaagca acgcagccga tacccttgaa acacccaccc agcccgcgaa cggcctcaag
      781 ttcgagctga tcaccaccga cggccaggcg cgacgcggcc gcgtcacgtt gaaccacggc
      841 gtagttgaaa cgccgatctt catgcctgtc ggcacgtacg gaacggtgaa ggccgtcgcg
      901 ccgcgcgagc tcgaggaaat gaacgctcag atcatcctcg gcaacacgtt ccacctctgg
      961 ctgcgcccgg gactggaaac gatcgccgcg cacggcgggc tgcatcgatt catgaactgg
     1021 cagcgcccga tcctcacgga ctccggcggt ttccaggtct tttcgctcgg cgatctacgc
     1081 aagatcaccg aggatggcgt cacgttcgcg tcccccatca acggcgacaa gctgttttta
     1141 tcgccggaaa tctcgatgca gatccagaag gtgctgaact cggacatcgt gatgcagttc
     1201 gacgaatgca cgccgtatgc aaccaacgac gtgcccacgc cgcatcagga cgcagccgat
     1261 tccatgcgca tgtcgatgcg ctgggccaag cgttccgtcg atgaattcgc caaaggtgac
     1321 aatccgaacg cgctgttcgg catcgtacaa ggcggcatgt tcgaagactt gcgggacgag
     1381 tcgctggcgg gtctcgccga catcggtttc cacggcttcg cgatcggcgg attgtccgtc
     1441 ggcgaaccga aggaagacat gatgcgcgtg ctggagcaca tcgggccgaa gcttcccgcc
     1501 gataaaccgc attacctgat gggcgtcggc acgccggaag acctggtggc gggtgtggcg
     1561 tcgggcgtcg acatgttcga ctgcgtgatg ccgacccgca acgcacgcaa cggctggctg
     1621 ttcacccgtt tcggcgacgt caagatccgc aacgctgccc acaagaactc gctcaagcca
     1681 ctcgatgaaa cctgcggctg ctacacctgc cgcaacttta cgcgcggtta tttgcaccat
     1741 ttgcatcgcg tgggcgaaat tcttggctcg caactcaaca cgattcacaa cctgcactac
     1801 tacttgcagc tcatgcaaga aatccgcgat tcgatcgaaa atcacgcgtt tgacgcattc
     1861 gtgaagcagt ttaaagagga tcgcgcacgc ggaatcgact gaccggatgg ctaacgtccg
     1921 gccacgaatc tgcaatcagc ccaagaaaca ttacaattgc tttacgcaac gctttaacag
     1981 cttgatcaca aagcgcattc cgcgcttggc ttgcgtagcc cggtgataga atagcgggct
     2041 aattttctga tcgttataac ggagagacca acgtggattt tatttcaaga gccttcggcg
     2101 gcggcgcaga tggcgcccag tcaagcatca tgagtttttt gccgctcatt ttgatgtttg
     2161 cagtgctgta tttcatcatg attcgcccgc aaatgaagcg tcagaaggaa catcgcaata
     2221 tgctgggcgc aatggcgaaa ggcgacgaag tggtcacgaa tggcggtatt gtcggcaagg
     2281 taacgaaggt gaccgacgct tacgtgggtg ttgagatcgc ggaaggcacg gaaatcacca
     2341 tccagaaggc tgccgtcacg actatccttc cgaaaggcac gatcaagtcg ctgtaaggcc
     2401 aacttttctc gcgtccggcg cggccagcgt ggcccggcct tagtggcgtg gcccccgtgg
     2461 ccaatagccc gcgctcatcg ccggacgcat cgcttacccc tcctcgccaa ctctcctgtt
     2521 cggccatccc catgaatcgc tacccacttt ggaaatatgc cgtgatgctg gtggcgctag
     2581 tcatcggcct cgtctataca ctgcccaatt ttttcggcga agcgccggcg gtgcaggtat
     2641 cgagcggcaa ggcaacggtc aagctggatt caactacgct tgccaacatc gaaaacgcgc
     2701 tggctgccga caaggtgacg ccggatgaag tgacgttcga caattcgtcg ctgaacgcca
     2761 acattcgcgt gcgcctgaaa gacaccgaca cgcaattgcg cgtgaaggat ctgttgcaga
     2821 aaacgctcaa cagcgacccg agcgatccgc aatatatcgt cgcgctgaat ttgcaggcag
     2881 cctctccgcg ctggttgagc gcgttgcacg cgttgcccat gtacctcggc ctcgacttgc
     2941 gcggcggtgt ccacttcctg ttgcaagtgg acatggcggg tgcgctgaac aagaagctcg
     3001 actccaacgc cgcggacgcc cgcgcgctgt tacgcgataa aaacatccgc gatggcggtg
     3061 tgaatcgcgt agatcagtca gtcgtggtca acttcgccga ccaggcagca gccgatgccg
     3121 cgcgcaccac gctgtcgaat ggcctgaacg aattgcaatg ggcgacgcgt caaggcggcg
     3181 acggttatca agtcgtcggt acgttcacgc cggcggcgca aaagctggcg gaagacagtg
     3241 cactcaagca gaacattgtc acgctgcata accgcgtgaa tgaactcggc gtgtcggaac
     3301 cggtgatcca gcagcaaggc tccgaccgta tcgtggtcga attgccgggt gtgcaggaca
     3361 cggcgaaggc gaaggacatc attggccgca cggcaacact ggaagcacgg ctcgccgacc
     3421 cgaccaacac ccatcctggc ccgaacgacc cggttcctcc tggcgatgaa ctcttcacgc
     3481 aaggcaacac gggcccgacg ctcgtgagaa agcaggtgat cttcacgggt gaccggatca
     3541 tcgacgcatc gtcaggcttc gacgaacacc agcgtccgt
//
LOCUS       DATGBK010000291         1707 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_188730, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000291 DATGBK010000000
VERSION     DATGBK010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188730"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VKJ77_04320"
     CDS             complement(<1..294)
                     /locus_tag="VKJ77_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009552781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HMC44532.1"
                     /translation="MFNKVLIANRGEIALRIQRACRELGLETVAVYSEADADARHVRL
                     ADQAICIGPAAPGKSYLNGAAIVFAAHVSGAEAVHPGYGFLSENADFADQVEAA"
     gene            complement(297..761)
                     /locus_tag="VKJ77_04325"
     CDS             complement(297..761)
                     /locus_tag="VKJ77_04325"
                     /inference="COORDINATES: protein motif:HMM:TIGR00531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HMC44533.1"
                     /translation="MIELLAQSPLAELELIEGDDRVRLVKTPGGRAGVAGLAVAPATP
                     GEPQAGPLEPGLALVPVPVAPAGQPESRTESDAHIIEAPMFGVVHLTPAPGEAPFVRV
                     GDTVAQGQVLCTIEAMKMFNSIESEFTGTVLAILVNAGDEVESAQPLFRIGR"
     gene            complement(948..>1707)
                     /gene="nac"
                     /locus_tag="VKJ77_04330"
     CDS             complement(948..>1707)
                     /gene="nac"
                     /locus_tag="VKJ77_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nitrogen assimilation transcriptional regulator
                     NAC"
                     /protein_id="HMC44534.1"
                     /translation="ATEAGATLYRHAQLILRQYEQAQADVKSAGQTLSGSVSVGLAPG
                     TGASALSLPLLTSVRARHPDILLYINENFGTTLSELIMNGRMDMAVLYGDKPVHGLSF
                     QLLLNEELFLVAPRSMGIAPGQIAVTDLRDVPLLLPRPYNYLRKYVDEGFARVQMVPK
                     VVAEIESATTLAAAVSAGIGATILPDSTARVVAGAGDVVQCRIVSPVIKIPLSVCLSD
                     HLPLSEPAAAVKDILLELAADLALGVTPAIGADT"
BASE COUNT          335 a          536 c          522 g          314 t
ORIGIN      
        1 cgcggcctcg acctggtcgg caaagtccgc gttctccgat aaaaaaccat agcccggatg
       61 cacggcttca gcgccgctga catgcgcggc gaacacgatc gccgcgccat tcaaatagct
      121 ttttccgggc gcggccggac cgatgcagat cgcctggtca gcgagacgta catggcgggc
      181 atccgcatcg gcttctgagt aaacggcgac tgtttccagt cccagctcgc ggcaagcgcg
      241 ctgaattcgc agcgcgatct ctccgcgatt cgcgatcaag accttgttga acatgatcag
      301 cgtccgatcc gaaacagcgg ctgggctgac tcgacttcat cgcctgcatt aacgaggatg
      361 gccaggaccg tgccggtgaa ctcggactcg atcgaattga acatcttcat cgcttcgatc
      421 gtgcagagca cctggccttg cgccacggta tcgccaaccc tgacgaacgg cgcttcgccc
      481 ggcgctggcg tgagatgcac gacgccgaac atcggcgctt caattatgtg ggcgtcgctt
      541 tcagtgcggc tttcaggttg gccggcaggc gcgacgggta caggcacaag cgcaagccca
      601 ggctcaagcg gcccggcttg cggctcgcca ggcgttgcgg gtgccactgc aaggcctgcc
      661 acacccgcac ggccgcccgg cgtcttgacg agccgaacgc ggtcgtcgcc ttctatcaac
      721 tcgagttcgg ccagtggcga ctgcgctagc agctcgatca aggctttgat tctttctaga
      781 tccatcattg agtcaggccc ggttattcgt gcgccggcgc ttaatgcagc gtgcggcaaa
      841 ccgcgacgcc cgcgagcgac gctcacaggc gaattacgat gaactcaatg tatccggcgc
      901 ataaaattcc cgccaagacg gtttggcttt gtagcgataa ggcgcgctta tgtatcggcg
      961 ccgatggcag gcgtgacgcc cagcgcaagg tccgcagcca gctccagcag gatgtccttg
     1021 accgccgcgg ccggctcgga aagcgggaga tggtccgaca aacagaccga aagcgggatc
     1081 ttgatgacgg gcgaaacaat ccggcactgc acgacatcgc ccgctcccgc taccacgcgt
     1141 gcggtcgaat ccggcaggat cgtggcgcct attccggcgc tcaccgcagc ggcaagcgtg
     1201 gttgccgact cgatctcggc cacgaccttg gggaccatct ggacgcgtgc aaacccttcg
     1261 tcgacgtatt ttcgaaggta attgtaaggt cggggcaaga gcagcgggac atcgcgtaaa
     1321 tcggtcacgg cgatctggcc gggggcgata cccatactgc gcggcgccac gagaaagagc
     1381 tcttcattga gcaacagctg aaatgagagc ccgtggaccg gcttgtcgcc gtatagcacg
     1441 gccatgtcca tgcgcccgtt catgatgagt tcgctgagcg tcgtgccgaa gttctcgttg
     1501 atgtacagaa gaatgtctgg atgacgcgcc cgcacggatg tcagcagcgg cagcgacaac
     1561 gcagaagcac cggtcccagg cgcgagcccg accgacacgg atcccgacaa cgtttgccct
     1621 gcgctcttca catcggcctg tgcttgctcg tattgccgga ggatcagttg agcgtgtctg
     1681 taaagcgtcg cgcccgcctc tgtcgcg
//
LOCUS       DATGBK010000292         1695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_327415, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000292 DATGBK010000000
VERSION     DATGBK010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327415"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(337..1359)
                     /locus_tag="VKJ77_04335"
     CDS             complement(337..1359)
                     /locus_tag="VKJ77_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44535.1"
                     /translation="MTAVLPSFPKPRNERPVSAIGNEWLRVVTSRGAGTVPFYRSIEE
                     RDAANVSRIVILLHGRLRDADAYLLSAQGALAAASTDPAHTLLLVPQFLATTDIAAHG
                     LSADTLHWEWTSWMGGDDALGPAPLSSFDVLDAFIAQFADLARYPALREVVIAGHSGG
                     AQVAHRYAIVGAGCNVAGVRCRYVIANPSSYVYFDSMRPYADGVLRPADTTACPGVDD
                     WKYGVRRAPRYAESASFDAFETRYAASDVIYLLGQQDCDPHHDALDRSCAAAAQGPHR
                     LARGRSYFSYLQARHPGLGHRCWEITGVGHNGAAMLGSHEGVRALFDTRRLANVVDSS
                     TTGATD"
     gene            complement(1360..>1695)
                     /locus_tag="VKJ77_04340"
     CDS             complement(1360..>1695)
                     /locus_tag="VKJ77_04340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44536.1"
                     /translation="VLASPTPGRVFAAQMVATVILSLMSGPHPGMLTQLFPTATRSTG
                     VALSYNIAVTLFGGLAPLTVSTLITVTGSNIVPAYYLIFAGFVSLALVGLTRSGQRLR
                     RDPDALPLD"
BASE COUNT          363 a          517 c          550 g          265 t
ORIGIN      
        1 agagcatgcc gcggcggacg agataggcgg cgtgggaggc gcgctgtcgt tattcgacga
       61 tgaaccgccg caaccggcca gcgcagcgac gacaagggat acgccgcaag cggcgagggt
      121 gtttttcatg atgctgtctc cgtaagttta ttaactgctg cttgcatcgg acaaacgagc
      181 caaacgagcc aaacgcacta gccaaacgag ccaaacgcac taaccaaacg cttgccgata
      241 aaccgatcaa gaaacgaccg acggaccgtc cagacgacag cagtcccgtc gccgaggcaa
      301 cgttcttgaa tgtcgtggtg tgttactgcg cggtgtctag tccgtcgcgc cggttgtcga
      361 tgaatcgacc acgttcgcga gccgtcgtgt gtcgaacaac gctcgcacgc cttcgtgcga
      421 accgagcatc gctgcgccgt tgtgtcctac gccggtgatt tcccaacagc gatgcccaag
      481 ccctggatgg cgggcttgga ggtacgaaaa ataagaacgt ccacgcgcga gccgatgggg
      541 tccttgcgct gctgccgcac acgaacggtc gagcgcgtcg tggtgtggat cgcaatcctg
      601 ctgaccgagc agatagataa cgtcgcttgc ggcgtaacgt gtttcgaacg catcgaatga
      661 cgcggactct gcgtagcgcg gcgcgcgccg cacgccgtac ttccagtcgt ccactccggg
      721 gcacgcagtg gtatcggcgg gacgcagaac accgtccgcg taggggcgca tcgagtcgaa
      781 gtacacatac gacgatggat tcgcgatgac gtaccggcat cgcacgccgg ccacgttgca
      841 acccgcgccc acgatcgcgt accggtgcgc gacctgcgcg ccgcccgaat gcccggcgat
      901 caccacttcg cgcagcgccg gataacgagc aagatccgcg aattgcgcaa tgaatgcatc
      961 gaggacatcg aaggaactga gcggcgccgg accgagcgcg tcgtcgccgc ccatccatga
     1021 ggtccattcc cagtgcaagg tgtcggcgga caagccgtgc gcggcaatat ccgtggtggc
     1081 caggaactgc ggtacgagca gcaaagtatg ggcgggatca gtcgatgccg ccgccagcgc
     1141 accttgcgcc gagagcagat acgcatcggc atcgcgcaac cggccgtgca gcaggatcac
     1201 gattcgcgaa acgttcgctg catctcgttc ttcgatcgac cgataaaacg gcaccgtacc
     1261 cgcgccgcgc gaagtaacca cgcgcagcca ttcgttgccg attgcgctaa ccgggcgctc
     1321 gttgcgaggt ttagggaagg aagggagcac ggcagtcatt taatccagcg gaagggcatc
     1381 gggatcgcgg cgcagacgtt gcccggaacg tgtcagcccg accagcgcga gtgacacgaa
     1441 gcccgcgaag atcaggtaat acgccggcac gatattcgat ccggtcacgg tgatcagcgt
     1501 ggagacggtc aggggcgcga ggccgccgaa cagcgtcacc gcgatgttgt acgagagcgc
     1561 gacgccggta gagcgcgtgg cagtggggaa caactgcgtg agcatgccgg gatgcggccc
     1621 ggacatcagg ctcagtatca cggtcgcgac catctgcgcg gcgaaaacac ggcccggcgt
     1681 gggggacgcg agtac
//
LOCUS       DATGBK010000293         1568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_327445, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000293 DATGBK010000000
VERSION     DATGBK010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327445"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1049)
                     /locus_tag="VKJ77_04345"
     CDS             complement(<1..1049)
                     /locus_tag="VKJ77_04345"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44537.1"
                     /translation="MTGVPGSPNVFYMAATDGGVWKTTDAGRVWKPVFDGQPTGSIGA
                     LAVAPSDPRTVYAGSGEGLQRPDLSTGDGMYRSNDAGATWTHLGLRDVQQISRIVVDP
                     HDAKRLFVAALGHPYGPNEQRGVFRSIDGGATFEKILYKNENAGAIELVMDPSDAQTL
                     YAELWSARRAPWTHGSTYTKSDLGTMLYKSTDGGASWNPLTRGLPDQSQGLGRIGLTI
                     SRADPKRLYAAVDAPRLGGIYRSDDAGASWQRTNDEQRVWGRGDDFAGVAADPKERDV
                     VYMANTSTYRSTDAGKTFTAIKGAPGGDDYHTIWINPDNTDIIALGVDQGATISVNGG
                     ATWSSWYNQPTAQFY"
     gene            1092..>1568
                     /locus_tag="VKJ77_04350"
     CDS             1092..>1568
                     /locus_tag="VKJ77_04350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44538.1"
                     /translation="MQTGKKIVIPLCSRRRNDDDSKSKSKRQNGNNLAHEMHFVQNAM
                     TLAWCTVATGGPVRSQRFAYRLSVCARYMHRLRPLALLMCLIVALPGGLRAQPLPSTP
                     IVSLGDDAFLNTTWHDLHGRCIGIVTNKSGVTSGGASFVDAVRKNSQICVKALFAPE"
BASE COUNT          301 a          485 c          479 g          303 t
ORIGIN      
        1 tgatagaact gcgcggtcgg ctggttgtac caagaactcc aggtcgcgcc gccgttgacg
       61 ctgatcgtcg cgccttgatc gacgcctagc gcgatgatat cggtattatc ggggttgatc
      121 cagatcgtgt ggtaatcatc gccccccggc gcacccttga tggcggtgaa cgttttgccc
      181 gcgtcggtag agcgatacgt cgaggtgttg gccatgtaga cgacatcgcg ctcttttgga
      241 tcggcggcaa cgccggcaaa gtcgtcgccg cggccccata cgcgttgctc gtcgttggtg
      301 cgttgccaag aagcgccggc atcatccgag cggtagatgc cgcccagccg cggtgcgtcg
      361 actgcggcat ataagcgttt tggatcggcg cgcgagatcg ttaaaccgat gcgcccgagc
      421 ccttgcgatt gatccggcag accgcgcgtg agcggattcc acgaagcgcc gccgtcggtc
      481 gacttgtaga gcatcgtacc gagatcggat ttcgtgtacg tgctaccgtg cgtccacggc
      541 gcgcggcgcg cggaccacaa ttcggcgtag agcgtctgcg catcgctcgg atccatcaca
      601 agttcaatcg cgcccgcgtt ctcgttctta tacagaattt tctcgaacgt tgcgccgccg
      661 tcgatcgaac gaaaaacgcc gcgctgctcg ttgggaccgt acggatgacc aagcgctgcg
      721 acgaatagcc gtttggcatc gtgcggatcg acgacgatac gcgaaatctg ctgcacgtcg
      781 cgcaaaccca gatgcgtcca cgtggcgccc gcgtcgttcg agcgatacat gccgtcgccc
      841 gttgagagat cgggccgctg caagccctcg ccactgccgg cgtacacggt tcgcggatcc
      901 gacggtgcaa cggcaagcgc gccgatcgag ccggtcggct gaccatcgaa caccggtttc
      961 cagacgcggc ccgcatcggt cgttttccaa acgccgccgt ccgtcgccgc catgtagaaa
     1021 acgttgggcg acccgggcac gccggtcatc gcgacggttc gtccggcacg aaatggtccg
     1081 atcgagcgcc agtgcagacc ggcaagaaga tcgtgatccc cttgtgcagc aggcgtcgga
     1141 acgacgacga ctccaaaagc aaaagcaaac gtcagaacgg caataatttg gcgcatgaaa
     1201 tgcacttcgt gcagaacgcg atgacccttg cttggtgcac ggtggcaacc ggcggcccgg
     1261 ttcgttccca aaggttcgcc tatcgtttaa gcgtatgcgc tcgctatatg cacagactgc
     1321 gcccgctggc actcctgatg tgtcttatcg tcgccctacc aggcgggctc cgggcgcaac
     1381 cgttgccgag cactcccatc gtttcgctcg gcgatgacgc attcttaaac acaacgtggc
     1441 acgacttgca cggtcgctgt atcgggatcg tcacaaacaa aagcggcgtg acatcgggcg
     1501 gagcaagctt tgtggacgcc gtgcgcaaga attcgcaaat ttgcgtgaag gcgctgttcg
     1561 cgcccgaa
//
LOCUS       DATGBK010000294         2933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_50054, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000294 DATGBK010000000
VERSION     DATGBK010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50054"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..911
                     /locus_tag="VKJ77_04355"
     CDS             <1..911
                     /locus_tag="VKJ77_04355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA topoisomerase IB"
                     /protein_id="HMC44539.1"
                     /translation="GMPRDKVLATVVRLLDTTLIRVGSEEYARDNKSYGLTTLRKKHL
                     SVKSGTLRFQFRGKSGIEHDVSVNDPRIARIIKRCMDLPGHDLFQYLDANGERHTVSS
                     SDINDYLHDITGADFTAKDYRTWAGSVFALAALRKLAWETVTEARKHVVGTIKEVSKI
                     LRNTPAVCRKCYVHPAVIEAFEAGELADELPPSRRSGLKTDEAMLAIFLEKDAKRRAR
                     EAARGRKNQANGAEPRLARLLAKSSQKAKAAALKNSSKDVGMEGLAMMSKAAAPKSPP
                     KTAATAARPATKKIARVRSSTAVAIS"
     gene            complement(957..1676)
                     /locus_tag="VKJ77_04360"
     CDS             complement(957..1676)
                     /locus_tag="VKJ77_04360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RES family NAD+ phosphorylase"
                     /protein_id="HMC44540.1"
                     /translation="MPQAENDWHADWPHTDLNWSPAYRVIPTRFPAVNLFDRVASPQD
                     FDALYALEAMTNDRLRTEVGDLDLVPLAERQFGAGYGPIMAAFTHLNPNGSRFSDGSY
                     GVFYCARDRRTAIEETRYHSALFLADTKQAPLRQQMRLYTVLAQGDVIDLCKGRLEQA
                     ALHPAILSPSSYVAGQALGRAVREAGAPGIAYPSVRDHGGECLAAFRTTLLRDCHHAA
                     YLEYEWNGETVTNVFEMSKVG"
     gene            complement(1691..2113)
                     /locus_tag="VKJ77_04365"
     CDS             complement(1691..2113)
                     /locus_tag="VKJ77_04365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbcA/ParS/Xre antitoxin family protein"
                     /protein_id="HMC44541.1"
                     /translation="MPRAQRVPRPIPAPQPSIADMSAAGLRAFFNIARDWALSADEQI
                     VLLGSPGRSTFFKWKQTPQTARLGRDTLERLSLILGIYKALQILLPQAEAADGWIKRA
                     NTAPPFGGRRALDRMLAGNVSDLVAVRQYLDAMRGGWA"
     gene            complement(2291..2563)
                     /locus_tag="VKJ77_04370"
     CDS             complement(2291..2563)
                     /locus_tag="VKJ77_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2866 domain-containing protein"
                     /protein_id="HMC44542.1"
                     /translation="MAASASFQNIKSTMKTDHALPLHECRLSEAVERPWGKPYRMVEW
                     ARKSDPCSQLSVVPAEFTTSEIAEVLRAHVSGRRYGPTDSDGTIQE"
BASE COUNT          627 a          901 c          875 g          530 t
ORIGIN      
        1 aaggcatgcc ccgcgacaag gtcctggcca ccgtagtcag gcttctcgac accacgctga
       61 ttcgcgtagg tagcgaagaa tacgcgcgcg acaacaagtc gtacggactc accaccctgc
      121 gcaagaaaca cctgagcgtc aaatccggca cgctacgctt ccagtttcgc ggaaaaagcg
      181 ggatcgaaca cgatgtctcg gtgaacgacc cgcgcatcgc caggatcatc aaacggtgca
      241 tggacctgcc cggccacgac ctgttccagt acctcgatgc gaacggcgaa cgccacaccg
      301 tcagctcctc cgatatcaac gactacctcc acgacatcac cggcgccgac ttcaccgcaa
      361 aggactaccg gacatgggcc ggcagcgtgt tcgcgctggc ggcgttgcgc aagctcgcgt
      421 gggaaaccgt gaccgaagca cgcaagcatg tggtcggcac gatcaaggag gtatcgaaga
      481 tattgcgcaa cacgcccgcc gtgtgccgca aatgttacgt ccatccagcg gtgatcgaag
      541 cgttcgaagc cggtgaactc gccgacgaac tgccaccctc ccgcagatcc ggcctgaaaa
      601 ccgacgaagc gatgctcgcc attttcctgg aaaaagacgc aaaacgccgc gcccgcgaag
      661 cagcgcgagg ccgcaagaac caggcgaatg gcgcggagcc gcggctcgcc cggttgctcg
      721 ccaagtccag tcaaaaggcg aaggcggctg cactcaagaa ctcgtcgaaa gacgtcggga
      781 tggaggggct ggcgatgatg tcgaaggccg ccgcaccaaa aagcccaccg aaaaccgcag
      841 cgacagccgc acgccccgcg accaagaaga tcgctcgcgt acgatcgtcg acggccgtgg
      901 ctatcagcta gatcagctag atcagctaga tcgatcagct agttgagttg tccggcttaa
      961 ccgaccttgc tcatttcgaa gacgttggtc acggtctcgc cgttccactc atattccaga
     1021 taagcagcgt gatgacaatc gcgaagcagg gtagtgcgga acgcggcgag gcattcgccg
     1081 ccgtgatccc gcacagacgg gtacgcaatt cccggtgcgc ccgcttcccg cacagcccgt
     1141 cccaacgcct gacccgcgac gtaactggat ggcgaaagaa tcgcgggatg gagcgcggct
     1201 tgttccagtc gtcccttgca tagatcgatg acatcgcctt gtgccaacac cgtgtagagc
     1261 cgcatctgct gacgcagcgg cgcttgtttc gtatccgcga gaaacagcgc cgagtgataa
     1321 cgcgtctcct caatcgcggt gcgccggtcg cgggcgcaat aaaacacgcc gtagctgcca
     1381 tcggagaaac ggctgccgtt cgggttcaga tgggtgaagg ctgccatgat cgggccgtaa
     1441 ccggcgccga actggcgctc ggcgagcggc accagatcca ggtcgcccac ctcggtacgc
     1501 aagcggtcat tggtcatggc ctcgagcgcg taaagggcat cgaaatcctg gggcgacgca
     1561 acccggtcga acaggttcac ggcaggaaaa cgcgtaggaa tcacccgata ggccggcgac
     1621 cagttgaggt cggtatgcgg ccagtcagca tgccagtcgt tttcagcttg cggcagattg
     1681 gatagatcgc tcacgcccaa ccgcctcgca tcgcatcgag atattggcga accgccacga
     1741 gatcgctcac gttgcccgcg agcatgcggt caagggcacg ccgtccgcca aatggcggcg
     1801 cggtattcgc acgcttgatc cagccatccg cggcttcggc ttgcggcagc aggatctgca
     1861 acgccttgta aatgccgaga atcagcgaaa gccgttcgag cgtgtcgcgc ccgagacgtg
     1921 ccgtttgcgg cgtctgtttc cacttgaaga acgtggatcg cccgggagaa cccagcagga
     1981 cgatctgctc atcggccgac aaggcccagt cgcgcgcgat attgaaaaac gcgcgcaagc
     2041 ccgccgcaga catgtccgcg atcgaaggct gtggcgcagg aatggggcgc gggacgcgtt
     2101 gagcgcgtgg catagaaaag tctcgttaag aacttgattc gtatattagt ccatttatgg
     2161 actatatcaa gttttaactg caatccggag cctcgtccaa gtccgtgtct gtctgcgtcc
     2221 gtctgtgccc gctacggatc ggggcccaaa agcgccgctg ctggtgttca attcgctttg
     2281 ggaggcgtgg tcattcctgg atggtcccgt cggaatccgt ggggccgtag cgccgccccg
     2341 acacgtgcgc acgcaatact tctgcaatct cggaggtagt gaactctgcc ggcacgacgc
     2401 tcaattgact gcagggatcg cttttgcgcg cccattcgac cattcgatac ggcttgcccc
     2461 acggcctttc cacggcctcg gaaagccggc attcgtgcag cggcagggcg tggtcggttt
     2521 tcatcgtgga cttgatgttc tgaaacgatg cgctggcggc catgacgtgt cctcgcggtg
     2581 aaagccctga ttaaaagccg ccctcgatgg cggcgataaa agctcgcgtt tgtaatgtgc
     2641 cctctgacaa ttaagtgcaa cttaaaacca gacgggttta cgtgcacact gctcattgct
     2701 gcacgaatgc ttttccgtcg cgcggcatta ctgtatattc atacaggtga gtgcttttgc
     2761 gtggacacga aacatgaaca gtcattcttc cgctgaagcc gctgcgctcg cgcgatacgt
     2821 gcaagctacg cgcgcggtat cggccgcttt tgacgccacg cgcagcgaac ctgaactggg
     2881 cgcgggcggc cgtacggtcg cattggcgct gcaacgactg gacagcgcgt tgc
//
LOCUS       DATGBK010000295         2153 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_281302, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000295 DATGBK010000000
VERSION     DATGBK010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281302"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1997)
                     /locus_tag="VKJ77_04375"
     CDS             complement(<1..1997)
                     /locus_tag="VKJ77_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HMC44543.1"
                     /translation="MNAPETPDTHRLIGAAVKRKEDYRFLTGNGQYTDDVVLPQQTFG
                     VFLRSPYAHATIRSIDIAAAKAAPGVVAIFTGADMAGESVGGLPCGWLIHNIDGKPMN
                     EPPHPVIAHTKVRHVGDQVALIVAESVKEAKDAIELIEVDYDVLPAVVDTATAADPGQ
                     PQVHDEAPNNLCYTWGHGDKAATDAAFAKAAHVTTLDIVNQRLVPNAIEPRAVNASYS
                     RSDDSYTVYVANQNPHVERLLMAAFVLSLPESKLRIIAPDVGGGFGSKIYLYAEDVAL
                     TWASKKVRRPIKWTCERSEAFLTDAHGRDHVTKAELAMDADGKFLGLRVHTTANMGAY
                     LSTFASAIPTILYATLLAGQYATPAIYAEVKAVFTNTVPVDAYRGAGRPEATYVLERI
                     VETAAREMNIDPAELRRRNFIRSWPYTTPVGLTYDSGDYSALLDRAMQIADVEGFPAR
                     REESKKNGKLRGLGYSCYIEACGLAPSNLAGALGARAGLFEAGEIRVHPTGSVTVFTG
                     SHSHGQGHETTFAQVVADRLGVSMDNIEIVHGDTGRIPFGMGTYGSRSIAVGGSAIMK
                     ALDKIEDKAKKIAAHLLEASAEDIEFKDGIFRVAGTDRTKAFAEVSLAAYVPHNFPLD
                     KLEPGLNENAFYDPSNFTYPSGAYLCEVEVDQDTGETRIQK"
     gene            complement(2082..>2153)
                     /locus_tag="VKJ77_04380"
     CDS             complement(2082..>2153)
                     /locus_tag="VKJ77_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC44544.1"
                     /translation="RCTGYHNIVKAIVQGAQAMKAAP"
BASE COUNT          382 a          674 c          661 g          436 t
ORIGIN      
        1 aacttctgga tgcgcgtttc gccggtgtcc tgatcaactt ccacttcgca caaatacgcg
       61 ccggatggat acgtgaagtt gctcggatcg tagaacgcgt tttcgttgag gccgggttcg
      121 agcttgtcga gcgggaagtt gtgcggcaca tacgccgcca gcgatacctc cgcgaacgcc
      181 ttcgtccggt cggtcccggc cacgcggaaa atgccgtcct tgaactcaat atcttccgcc
      241 gatgcctcca gcaaatgcgc ggcgatcttc ttggccttgt cctcgatctt gtcgagcgcc
      301 ttcatgatcg ctgagccccc caccgcgatg gaccgtgagc cgtacgtgcc catgccgaac
      361 ggaatccgcc cggtgtcgcc gtggacgatc tcgatgttat ccatcgatac ccccaaccga
      421 tccgcgacca cttgcgcgaa ggtggtttcg tgcccttgac catggctatg cgagccggtg
      481 aacacggtga ccgaacctgt gggatgcacg cggatttcgc ccgcttcgaa caagcccgcg
      541 cgcgcgccca acgcacccgc gagattcgat ggcgccagtc cgcacgcctc gatgtagcag
      601 gaatacccaa gcccgcgcag cttgccgttt ttcttcgatt cctcacgccg tgcggggaat
      661 ccttccacat cggcgatctg cattgcgcgg tcgagcaacg ccgagtagtc gccggaatcg
      721 taggtcaggc caaccggcgt ggtgtacggc cacgaccgga tgaaattgcg ccgccgcaat
      781 tcagcgggat cgatgttcat ctcacgcgcc gccgtctcta cgatacgttc aagcacatag
      841 gtcgcttcag gacgtccggc gccgcgatag gcatcgacgg gaaccgtgtt cgtgaaaaca
      901 gccttcacct cggcgtagat cgcgggcgtg gcgtactggc cggcgagcag cgtggcgtac
      961 aggatggtcg gaatcgcgga cgcgaacgtc gacaaatacg cgcccatgtt ggccgtcgtg
     1021 tgaacgcgaa ggccgaggaa cttgccgtcg gcgtccatcg cgagttcggc tttcgtgacg
     1081 tgatcgcggc cgtgggcatc ggtgagaaat gcttccgagc gctcgcacgt ccacttgatc
     1141 ggccgccgga ctttcttcga cgcccacgtc aacgccacat cttccgcata cagataaatc
     1201 ttcgagccga aaccgccgcc cacgtccggc gcgatgatcc gtagtttcga ctcaggcaac
     1261 gacaacacaa acgcggccat caacaaacgc tcgacgtgcg gattctggtt cgcgacgtac
     1321 accgtgtagc tgtcgtcgga cctcgaataa ctcgcgttca cggcgcgcgg ctcgatcgcg
     1381 ttcggcacca ggcgctggtt cacgatatcc agcgtggtca cgtgcgcggc tttggcgaaa
     1441 gcggcgtcgg tggcggcttt gtcgccgtgg ccccaggtgt agcagaggtt gttcggcgct
     1501 tcatcgtgga cctgaggttg gcctggatcg gcagcagtgg cggtatcgac gacagccggt
     1561 agcacgtcgt aatccacctc gatcaactcg attgcgtcct tcgcttcctt cacagactcc
     1621 gcaacgatca acgccacctg atcgcccacg tgccgcactt tcgtatgcgc gatcacggga
     1681 tgcggcggtt cgttcatcgg cttgccgtcg atattgtgga tcagccagcc acacggcaat
     1741 ccaccgacgc tttcgcccgc catatccgcg cccgtaaaga tcgcgacgac gccgggcgcg
     1801 gctttggccg cggcgatgtc gatgctgcgg atggttgcgt gcgcgtaggg cgagcgcagg
     1861 aagacgccaa aggtttgctg cgggaggacg acgtcatcgg tgtactggcc gttgcccgtc
     1921 aggaagcgat agtcttcctt gcgtttaacg gcagcgccga tcaggcggtg ggtatcgggt
     1981 gtctcagggg cgttcatcgc ggactcctgt tcaggcgcga atcttcatcg gaaaggtgag
     2041 tgcggcttcg gtgcagcgtt agttgaagcg cgggcggcag ctcagggcgc ggccttcatg
     2101 gcttgcgcgc cctgcactat ggctttcacg atgttgtgat accccgtaca tcg
//
LOCUS       DATGBK010000296         2925 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_281310, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000296 DATGBK010000000
VERSION     DATGBK010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2925
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281310"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..182
                     /locus_tag="VKJ77_04385"
     CDS             <1..182
                     /locus_tag="VKJ77_04385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44545.1"
                     /translation="EVPANRNPHLTRNRIGTRKGHLSGVMAFNPEYLASEEVQVISAL
                     DIGERGGPDPEQASP"
     gene            370..1371
                     /locus_tag="VKJ77_04390"
     CDS             370..1371
                     /locus_tag="VKJ77_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012338755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC44546.1"
                     /translation="MSVRTFSTLRHTTRYLEAGPADGPLIIFLHGWPEIGLMWRTQIE
                     AFASEGWRCVAPDMRGYGGSSAPAASEAYALNEIVDDMVELHDHLGAHPAIWVGHDWG
                     SPVAGALAAHHGKRCRGVVLISVPYFPEGFALPNLVPLIDRQLYPADQYPDGQWDYFR
                     FYLTHFSQTVSDFEADIPATLASIYRRGNPASVGQVSPSALITKNGGRYGSAHRAPAM
                     PPDPALWTPADFNALVEAFHVSGFRSVNAWYLNDTANIAYAHAAPDGGRISQPVLFVN
                     SDWDAISDINRSRLGEPMRGACEDLSVTNLPAGHWLPLERKTELVQAIRSWLEVKGL"
     gene            complement(1402..2589)
                     /locus_tag="VKJ77_04395"
     CDS             complement(1402..2589)
                     /locus_tag="VKJ77_04395"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006635 - fatty acid beta-oxidation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HMC44547.1"
                     /translation="MSQQREVVLCEPVRTAIGAFNGALKGTPATDLGAAVVRETLRRA
                     GVAGQDVESVTLGNVIQAGNRMNPARQAAVNGGLPVSVPALTVNRVCGSGAQAIVSAA
                     NEITAGFVQLAVAGGMENMDRAPYLLDNGRFGYRMGNAEIHDSMLRDGLDDAFSGKHS
                     GWHTEDLVTQMDITREAQDRFAERSQKRFAAAQAKGWFAAEIVGVEVKAGKQSVVFNI
                     DEQPRPDTTFATLTKLRPAFRPDGTITAGNAPGLNSGAAAMLVADRAFAERKGIEPSV
                     RLVAYGIAAVEPGMFGLGPVPAVQQALDRAGWKLGDLERIEINEAFAAVPIAVARKLG
                     LPDDVVNPEGGAIAHGHAIGATGAVLVTRLAHAMKRDGLKRAMVTLCIGGGQGIALAL
                     ESV"
     gene            complement(2619..>2925)
                     /locus_tag="VKJ77_04400"
     CDS             complement(2619..>2925)
                     /locus_tag="VKJ77_04400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014619822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC44548.1"
                     /translation="WLTIDSTGSYSASKSAAWAITNGLRTELRGQNTLVVGVHPAFID
                     TDMTAGIDAPKTSPEEVVRQVLEGIEQGKEEILVDEVGRNVKASLSSATPAYLTPAH"
BASE COUNT          511 a          999 c          848 g          567 t
ORIGIN      
        1 gtgaagttcc tgcgaaccgt aacccccacc tgactcgcaa caggattggt actcggaagg
       61 gacatctatc cggcgtcatg gcattcaatc ccgaatacct tgcatcagag gaagttcagg
      121 taatcagcgc gcttgacatc ggcgaacgcg gcggaccaga cccggagcag gcgagtccgt
      181 agacctttcc tataatcaat cgtgactaaa tgagacctcc cgatgtcagc tatgtcgcgc
      241 cgcactcccc tcgaaagtgg aaccgccttt ggcgcaagtc tgctgatgag taaagcagat
      301 tttggggctg gatctgtcgc tgccggcggc acggtaaacc ccgcagctaa ttctagtaac
      361 gtctctagca tgtccgtgcg taccttcagc acgctccgcc acacgacacg ctacctggaa
      421 gccgggccgg ccgacgggcc gttgatcatc tttctccacg gctggcccga gatcggcctc
      481 atgtggcgca cgcagatcga ggccttcgcg tccgaaggct ggcgctgcgt tgcaccggac
      541 atgcgtggct acggcggctc atcggcgccg gccgcctccg aggcctacgc cttgaacgag
      601 atcgtcgacg acatggtcga gcttcacgac catttggggg cgcatccggc aatctgggtt
      661 ggccacgact ggggaagccc cgtggccgga gcgctggccg cgcaccacgg gaagcgctgt
      721 cgcggcgtgg tgctgatctc ggtcccttac tttccggagg gcttcgcgct gcctaatctc
      781 gtgccgctga tcgaccgtca gttgtacccc gctgatcaat acccggacgg gcagtgggat
      841 tacttccgct tttacctgac gcacttcagc cagacggtta gcgatttcga ggcggacatc
      901 ccggcaaccc tcgcgtcgat ctatcggcgc ggcaaccctg cgtccgtggg ccaagtctcg
      961 ccgtccgcct tgatcacaaa aaacggaggt cgctatggct cggctcatcg cgccccggcg
     1021 atgccgcctg acccggcgct ctggacgccc gctgacttta acgccttggt cgaagcgttc
     1081 catgtcagtg gtttccgttc ggtcaatgcc tggtacctga acgacaccgc caacatcgcc
     1141 tatgcccatg ctgcacccga cggcggccgc ataagccagc ctgtgttgtt cgtcaacagc
     1201 gattgggacg ccatctccga catcaaccgc agtcgcctcg gagaacccat gcgcggcgcc
     1261 tgcgaggacc tttccgtaac gaaccttccc gccggccact ggcttccgct ggagcgcaag
     1321 actgaacttg tccaagcgat ccgttcgtgg cttgaggtaa aagggcttta gaggtcggcc
     1381 cgacctgtcg tttcccccgt atcaaacgct ttccagcgcc agcgcaatgc cctgcccgcc
     1441 gccgatacac agcgtcacca tcgctcgctt caggccgtca cgtttcatcg cgtgggcgag
     1501 gcgcgtgacc agcactgcgc cggttgcgcc aatcgcgtgg ccgtgggcaa tcgcgccgcc
     1561 ctcggggttc accacgtcat caggcagacc cagtttgcgc gcaaccgcga tcggcacggc
     1621 ggcgaacgct tcgttgatct ctatgcgttc aagatcgccc agcttccagc ccgcgcgatc
     1681 caacgcctgc tgcacggcag gtaccggtcc caggccgaac atgcccggtt caaccgccgc
     1741 gatgccgtac gcgaccagcc gcaccgatgg ctcgatcccc ttgcgctcag cgaacgcgcg
     1801 atccgccacg agcatcgccg ccgctccgct gttcaggccc ggcgcgttgc ctgcggtgat
     1861 cgttccgtcg gggcggaatg caggccgcag tttggtcagc gtcgcgaacg tggtgtcggg
     1921 gcgcggctgt tcgtcgatat tgaagacgac gctttgtttg cccgccttca cctcaacgcc
     1981 gacaatctcc gccgcaaacc aacccttcgc ctgcgctgcg gcgaaacgtt tctgcgagcg
     2041 ctcggcgaag cggtcctgcg cttcgcgcgt gatgtccatc tgagtcacga gatcttccgt
     2101 atgccagccg gaatgcttgc cggagaacgc gtcgtcgaga ccatcgcgca gcatgctgtc
     2161 gtggatttcc gcgttgccca tccgataccc gaagcgcccg ttatcgagca aatatggcgc
     2221 acggtccatg ttctccatac cgcctgccac cgcgagctgc acgaagccag cagtaatctc
     2281 attagccgcc gatacgatcg cctgcgctcc tgagccgcac acgcggttca cggtcagcgc
     2341 gggtaccgag acaggtaagc cgccgttcac ggccgcctga cgggccggat tcatgcggtt
     2401 gcccgcctgg atcacgttgc ccaaggtgac cgattccacg tcctgtcccg cgaccccggc
     2461 acgccgcagc gtttcacgga caacggccgc gcccaggtcc gtcgcaggcg tgcccttcag
     2521 cgctccgttg aacgcgccga tcgcggtcct gacgggctca cacagcacga cttcacgttg
     2581 ttggctcatg gtttttcact cctggttgac ccgaaaactt agtgcgccgg cgtgagataa
     2641 gcgggcgtgg ccgaagacaa cgacgccttc acgttgcggc cgacttcatc gacgagaatc
     2701 tcttccttgc cttgctcaat gccttcgagc acctgacgca caacctcttc cggcgatgtc
     2761 ttcggagcgt cgattcccgc ggtcatatcg gtatcgataa acgccggatg cacacccacc
     2821 actagcgtgt tctgcccgcg cagttcggtg cgcaggccgt tcgtgatcgc ccacgcggca
     2881 gacttggacg cgctgtacga acccgtgctg tcgatggtca accag
//
LOCUS       DATGBK010000297         5039 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_235058, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000297 DATGBK010000000
VERSION     DATGBK010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5039
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235058"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VKJ77_04405"
     CDS             complement(<1..199)
                     /locus_tag="VKJ77_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014897682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HMC44549.1"
                     /translation="MKYALLILGMAVITYGIRSAVFVFGERLSFPPIVRMALNFVPVT
                     VLTAIIVPMTFAPHGGAAELTW"
     gene            complement(196..909)
                     /locus_tag="VKJ77_04410"
     CDS             complement(196..909)
                     /locus_tag="VKJ77_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HMC44550.1"
                     /translation="MMIGAAPFGVIFGTLAATGPLHAWSVQLMSLAVFAGSAQFIALG
                     LIAGHASFAVIWATTFIVNLRHVLYSATLAPYVAHLPARWRWTLGAFMTDEVFAVSYA
                     HYQRRAPGETGPYYFLGSGVSMYVNWQIWTVAGLLFGSAFPGLQSKGLDFAMVATFIA
                     IIVPQLVAVRFVAAALAAGVLSFAWNDWPYKLGLLAAVVVGVAVGMLLSMRANGATNS
                     TQSRAERSKQRPTEMERAK"
     gene            complement(1091..1912)
                     /locus_tag="VKJ77_04415"
     CDS             complement(1091..1912)
                     /locus_tag="VKJ77_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC44551.1"
                     /translation="MTASRFSNSARYWRSPLVPGAEMLTAEYYDHSFTPHWHDAYTVP
                     VIEAGAEQYDYRGSNFVAEAGSVPVINPGELHTGARAVDLGWRYRVFYLPVDFVQSVV
                     DEVAGCAQPMPWFSADVIRDADLAQRVQIAHQAMEANLDPLGAEHALLDAVSTLLARH
                     AGQRPPVQRMRQDTTRVNTMKARLTDDLTEPLSLAELAQTVGLSTFHAARLFTRETGL
                     APHAWRNQMRVNRALDALRAGVPVTDVAAASGFTDQSHFTRHFKKTFGVSPGRWR"
     gene            complement(2018..3091)
                     /locus_tag="VKJ77_04420"
     CDS             complement(2018..3091)
                     /locus_tag="VKJ77_04420"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HMC44552.1"
                     /translation="MSAIKSTRFDLLDGLRGVAAIAVMLHHYTQHTGWDWFGGAWVAV
                     DLFFVLSGFVIAHSYSKKILNGMSFREFAFVRLVRLAPLYLLGLALGVCAVLLSMAKT
                     GTPQISGTQLATATVLGAAWLPYFNNIGWPFGTDTVVGATFPLNDPSWSLFFELFVNV
                     VFAAYLYKFRKLPKATYSILAFIAFIACTVIFRQINPGWRAESFLLGFPRVIAEFFAG
                     VFIFSMGLQYKKAHPVFTAAVTIAALACFAMGNPKLAFVNSLTLVPLSVALLCSVSIE
                     GIGKGICKALGELSYPLYVIHFPVYRLVFESFEIRVLNPVAQTLVVAGISIVLALLLA
                     RADQELRRKLTSFIKTKTSAAAV"
     gene            complement(3402..3773)
                     /locus_tag="VKJ77_04425"
     CDS             complement(3402..3773)
                     /locus_tag="VKJ77_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013959269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HMC44553.1"
                     /translation="MILVDTSVWIDHINASDSMLASLLADARVLAHPYVIGEISLGSL
                     RDRDVVLGALLDLPSVPTATPEETFYLIKCESLFNRGIGYVDTSLLASARLCPGVTIW
                     TRDKRLKKVADELHLSATLGH"
     gene            complement(3770..3967)
                     /locus_tag="VKJ77_04430"
     CDS             complement(3770..3967)
                     /locus_tag="VKJ77_04430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013959268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapB family
                     antitoxin"
                     /protein_id="HMC44554.1"
                     /translation="MRTTIALDDDLIAKAQAYTGLEEKTALVREALKALIQREAAKRL
                     ANLGGSQPGIKGAPRRRQDVE"
     gene            4343..>5039
                     /locus_tag="VKJ77_04435"
     CDS             4343..>5039
                     /locus_tag="VKJ77_04435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006156532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44555.1"
                     /translation="MKISKLLMTLGVVALSVFARLTPVHAEALDDIEKRGVLRVAVPQ
                     DFAPFGSVGPSMQLEGLDIDVSGLLAKKLGAKLELVPVTSANRIPYLQTNKVDLVIST
                     LGRDAERDKVIDFSQSYSPYNNSVYGPANMKIDGPADMAGKTVGVARGTFEDLMLTKS
                     VPPSTTIKRFEDNSGMISAYLAGQVPLVGTGDFVANKIAATLPASAPTKPALKYVIHE
                     SACHVGLNKNEPKL"
BASE COUNT         1149 a         1470 c         1489 g          931 t
ORIGIN      
        1 gccaggtaag ctcggcagca ccgccgtgcg gtgcaaacgt catcggcacg atgatcgccg
       61 tcagcaccgt caccggcacg aaattgagcg ccatgcgcac tatcggagga aagctcaggc
      121 gctcaccgaa cacgaatacc gcagagcgaa tgccataggt aatcaccgcc atcccaagga
      181 tcagaagggc gtatttcatt tggcgcgctc catttccgtg ggacgttgct tggaacgttc
      241 tgcccggctt tgcgtggagt tcgtggcgcc gtttgcacgc atcgacagca gcatgcccac
      301 cgccaccccc accacgactg ccgctagcaa accgagcttg taaggccagt cattccacgc
      361 aaacgacaac acgccggctg ccagcgccgc cgctacaaaa cgcaccgcaa caagctgcgg
      421 cacgatgatc gcaatgaatg tggcgaccat cgcgaagtcg agtcccttcg actgaagacc
      481 tggaaacgcc gaaccgaaca gcagtcccgc gacggtccat atctgccagt tcacatacat
      541 ggatacgccc gagccgagga agtaatacgg cccggtttcg cccggtgccc ggcgctgata
      601 atgcgcgtac gagacggcaa agacttcgtc ggtcatgaac gcgccgagcg tccagcgcca
      661 gcgcgcgggc aagtgcgcga cgtagggcgc aagcgttgcg gaatacaaga cgtgacgcag
      721 gttgacgatg aacgtggttg cccagatcac ggcaaaactc gcgtggccgg cgatcaggcc
      781 aagtgcgatg aattgcgcgg agcctgcaaa cacggcaagc gacatcaact gcaccgacca
      841 cgcatgcagc ggaccggtgg cggcgagcgt gccgaagatc accccaaatg gcgcggcgcc
      901 gatcatcatg ggaatggtgt cgcgtgcgcc tgcgccgaat tcggcgaggt tacccggttg
      961 atggacctga tggtcctgat gcgttgagtt caatgtctcc tccgttgata gcgaggatag
     1021 gacacgccgc gttcatgcgc ttgtacgttc ttgcggtcct gttacatcga caagatgcgg
     1081 tgcgctagcg ctaacgccag cgtcccggcg acacgccgaa ggtctttttg aagtgccgcg
     1141 tgaaatggct ctggtcggtg aagccgctcg ccgccgccac gtccgtcacc ggaacgcccg
     1201 cacgcaaggc atcgagcgcg cgattgacac gcatctggtt acgccacgcg tgaggggcga
     1261 gcccggtctc gcgcgtaaag aggcgcgcgg catggaaggt cgaaagtccc actgtctgcg
     1321 ccagttcggc aagcgataac ggctcagtca ggtcatcggt caggcgggct ttcatcgtat
     1381 tcacgcgcgt ggtgtcctga cgcatgcgct gcaccggcgg acgctgtccg gcgtgacgtg
     1441 caagcagagt ggataccgcg tcgagcaacg catgttccgc cccgagcgga tccaggttgg
     1501 cttccattgc ctgatgcgca atctgcacgc gttgtgcgag atcggcgtcg cggatgacat
     1561 cggcggagaa ccatggcatt ggctgggcac agccggccac ttcgtcgacg acggactgca
     1621 cgaaatcgac cggcagataa aacacgcgat accgccagcc cagatccacc gcccgcgcgc
     1681 cggtatggag ttcgccggga ttgataaccg gcacggaacc cgcctcggcc acgaagttcg
     1741 atccgcgata gtcgtactgc tccgcgcccg cttcaatgac gggaacggtg tacgcgtcgt
     1801 gccagtgggg cgtgaaggag tggtcgtaat actcggccgt aagcatctcc gcgccgggca
     1861 cgagcggcga gcgccaataa cgcgcggaat tgctgaaacg ggaggcagtc atggctttgc
     1921 gatgccgtgg gcggaaaccg caagtttagc ccgggccgcg ttttcagcgg attatgaata
     1981 acccgccggt tgttgccatg cctgaaggag gctccgctta gaccgcggcg gccgacgtct
     2041 tggtcttgat gaaactcgtc agcttcctcc tgagttcctg gtccgctcgc gcgagaagta
     2101 aggccagcac gatcgagatg cccgccacga ccagtgtctg ggcgaccggg ttgagcaccc
     2161 ggatctcgaa cgactcgaac accagccgat agaccgggaa atggatcacg tagagcggat
     2221 acgacagttc gcccagcgcc ttgcagatcc ctttgccgat gccttctatg gacacggagc
     2281 acagcaacgc gaccgacaac ggaacgagcg tcagcgaatt gacgaatgcg agcttgggat
     2341 tgcccatcgc gaagcacgcc agcgccgcga tcgtgactgc tgcggtaaaa accggatggg
     2401 cctttttata ctggagcccc atcgaaaaga tgaagacccc ggcgaagaat tcagcaataa
     2461 cgcgcgggaa tccgagcagg aaactctccg cccgccagcc tggattgatt tgccgaaaga
     2521 ttactgtgca ggcaataaac gcgatgaacg cgagtattga ataggtggcc ttcgggagtt
     2581 tgcgaaactt gtacaggtaa gcggcaaata caacgttgac gaataactcg aagaataacg
     2641 accacgatgg atcgttcaac ggaaaggtcg cgcctacgac agtgtccgtg ccaaaaggcc
     2701 agccgatatt attaaagtac ggcagccagg ccgcgcccag cacggtggct gtcgcgagct
     2761 gagtgcccga tatttgcggc gtgccggttt ttgccatcga cagcaacaca gcgcacacgc
     2821 caagcgccag ccccaggagg tagagcggcg cgagccggac gagccgcacg aaggcgaatt
     2881 cgcgaaacga cattccgttc aggattttct tgctgtaact gtgcgcaatc acgaagccgg
     2941 acagcacgaa gaacaggtcg accgcgaccc acgccccgcc gaaccagtcc caacccgtgt
     3001 gctgcgtgta gtggtgaagc atgacggcaa ttgcagcaac acctctcaag ccgtcaagca
     3061 aatcgaacct ggtggacttt atggcgctca tagtgtcggt ccgtcattat cgagcgctca
     3121 gtctagggtg gaaaaaatgc aatcggagcg cggaaaaata tccgtttgaa tcgccaggtc
     3181 gagaaaatat tagaaaataa ttcgaaagaa tttttgtggg cgagaaatat caagggtgag
     3241 atgcgcagcc acagacctat tagttaacga gcgccccccg gattcgcggc tttatcggaa
     3301 aggcaagacg gctgatattc cagaccagga aaaaaacgac tctccggaga ttcgaccaga
     3361 ctccatggct cagcaaaatc gacctaaatt cccgcagccc gctaatgccc aagcgttgcg
     3421 ctcaggtgga gttcatctgc cactttcttt agtcgcttgt cgcgcgtcca gatggtaacg
     3481 ccgggacata agcgcgcgga cgccaacagc gacgtgtcga catatccgat cccacgatta
     3541 aataaacttt cgcattttat tagataaaac gtctcctccg gcgttgcagt tggcacgctc
     3601 ggtagatcga gcaacgcgcc aagcacgacg tcgcggtcgc gcaaactgcc gagcgatatt
     3661 tctccaatca catagggatg cgccagcacg cgcgcgtcgg caagcaagct agcgagcata
     3721 gaatcagaag cgttgatgtg gtcgatccag actgacgtgt cgacgagaat cattcgacgt
     3781 cctgccggcg acgcggcgcc cccttgatac ccggttggct accgccaaga ttcgcgagtc
     3841 gtttcgcggc ttcacgttgg atcaaagcct tgagcgcttc gcgcacaagc gccgtttttt
     3901 cctccagtcc cgtataggct tgggccttgg cgatcaaatc gtcatcgagg gcaatggtag
     3961 tacgcatgag aacctccgat cagttaacgc accaatatta gcatcgttta atgcgaaatt
     4021 acgtgcacac ttgtcatcct gaaatatgcc gcagggcagt tgccgtgaat tcacttcgcc
     4081 gacggcctcg atacctatcc gggtcaaggt cgccgtgagc gcttgagggc gcctgcggcg
     4141 cgcacttgtt tgtcgcctca tcgggaagtc ggttgcgccg cctgctccgt cacgtcgccg
     4201 agcccatgaa ttttgaatcg tttagaaaac aaaagacttg ctaatagact ttgcgatgtc
     4261 gcgagccaag cgcttccgcc tccctccggc aaagcaaaaa gacgatcgac gtagacagac
     4321 cacaccacgt ttcaggggaa acatgaaaat ttcgaagttg ttaatgacgc ttggcgtagt
     4381 cgcgctgagc gtgttcgcac gtttgacgcc ggtccacgcg gaagcactgg atgacatcga
     4441 aaaacgcggt gtgctgcgcg tggccgtgcc gcaggatttt gcgccgttcg gatcggtcgg
     4501 tccgagcatg caattagaag ggcttgatat cgacgtgtcc gggctgcttg cgaagaaact
     4561 cggcgccaag ctggaactgg tgccggtcac gagcgcaaac cgcattccgt acctgcagac
     4621 gaacaaggtc gatctggtca tctcgacgct tggccgcgat gcggagcgcg acaaggtcat
     4681 cgacttttcg cagtcgtatt cgccttataa caatagcgtg tatggtcccg cgaatatgaa
     4741 aattgacggc ccggcggaca tggccgggaa gacggtgggt gtcgctcgcg gtaccttcga
     4801 agacctgatg ctgacgaaaa gcgtgccgcc ctccaccact atcaagcgct tcgaggacaa
     4861 cagcggcatg atctccgcct acctcgcggg tcaagtgccg ctggtgggca cgggcgactt
     4921 cgtggctaac aagattgccg cgaccttgcc cgcgtcggcg ccgactaaac ccgcgctcaa
     4981 gtatgtgatt catgagtcgg catgtcatgt cgggctgaac aagaacgagc cgaagctga
//
LOCUS       DATGBK010000298         2262 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_72952, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000298 DATGBK010000000
VERSION     DATGBK010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72952"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..927
                     /locus_tag="VKJ77_04440"
     CDS             <1..927
                     /locus_tag="VKJ77_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC44556.1"
                     /translation="AHAKADGNIATNAPLIVREPLPPRRARSHKVVLQVEGIGKHYSR
                     RGTHRGETFTALQDISFAVREGEVLGIVGESGSGKSTCANIVLGLVEPDAGNVEFLDT
                     RWNGNGVSERSRRDLRPRLQYIPQDPLSSFNPRHSVAQLLEEALWSKRLSKPALLAKS
                     VELLEQVGLSAEFLDRSPTSLSGGQRQRVAIARALAPEPALIVCDEPVSALDVYVQAQ
                     VLDLLAELQGRLHTSLLFISHDLDVVRHISDRVLVFKDGRIVEEGEAERVFAAPEHAY
                     TKLLMSSTPAFRRSTLDNKIRTEGQVPEREIS"
     gene            complement(1000..>2262)
                     /locus_tag="VKJ77_04445"
     CDS             complement(1000..>2262)
                     /locus_tag="VKJ77_04445"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC44557.1"
                     /translation="NFRHYVRLAQAAQAAKFDLLFLADGVGTRGDNLDFLSRTAHSYI
                     AQFEPITLLSALAAVTEDIGLVGTASTSFNEPYHIARKFASLDHISGGRAGWNLVTSS
                     NEHEAKNFNRDRHFDHSERYERATEFAEVVDRLWDSWEDDAFLRDKEQGRFFNPAKRH
                     VLDHKGRFFQVKGPLNVARSPQGQPVVVQAGSSEAGRALAARTAEVIFTAQQTLQDAI
                     DFYADVKGRLQQHGRHPDELKIMPGVMPIVGRTESEAREKFEHLQSLIDPAVGLALVS
                     GLTGGFDLSAYPLDGPIPELPETNASKSRQLLTLELARRENLTIRQLYLRVAGARGHW
                     QVVGTPEQIADQLEERFVQYGADGYNIMPAVLPGSLTDFIELVLPELRRRGLFRTEYE
                     GRTLRANLGLARPVNRYSAETAGAVAAA"
BASE COUNT          435 a          688 c          686 g          453 t
ORIGIN      
        1 gctcacgcga aagccgacgg caatattgcc accaacgcac cgctgatcgt gcgcgagccg
       61 ctgccgccgc gacgtgctcg ctcacacaag gtcgtgctgc aggttgaagg catcggcaag
      121 cactattctc gtcgtggtac acatcgcggt gagactttta ctgcgctgca ggacatctcg
      181 ttcgccgtgc gcgaagggga ggtgctaggg attgtcggcg agtccgggtc cgggaaaagc
      241 acctgtgcca acattgtgct gggactggtc gagccggatg ccggcaacgt cgaatttctt
      301 gatacgcgct ggaacggcaa cggcgtttcc gagcgctcgc gccgtgactt gcggcccagg
      361 cttcaataca ttccgcaaga tccactcagt tcgtttaacc cgcgtcattc agtggcccag
      421 ttgctggaag aagcgttatg gtcgaaacgt ttatccaagc cggcgttgct tgcgaaaagc
      481 gtcgagctgc ttgaacaggt cggactcagt gccgagtttc tcgaccgtag tccaacgtcg
      541 ctctcgggtg gccagaggca gcgcgtggca atcgcgcgtg cgcttgcccc ggagcccgca
      601 ctgattgtct gcgacgagcc cgtgtctgcc ctcgatgttt acgtccaggc gcaggtgctc
      661 gacttgttgg cggaattgca aggacggctg catacgtcgt tgctgttcat ctcgcacgat
      721 ctcgacgtcg tgcgtcatat cagtgatcgg gtactggtct tcaaggacgg ccgcattgtt
      781 gaagagggcg aggccgaacg cgtgttcgca gcccccgagc atgcgtacac gaagcttttg
      841 atgtcgtcga cgcccgcgtt tcggcgttca acccttgata acaagatcag gaccgaaggc
      901 caggtgccgg agcgcgagat atcctgacga ctccacgcct cgaaagctgg cgctgcgggc
      961 ggccctgtat tcatgttgaa tgcacccgac cctatcccct caggccgccg ccaccgcgcc
     1021 agccgtctcc gcagagtagc gattaaccgg ccgcgcgagg ccaagattag cgcgcagcgt
     1081 ccggccctca tactccgtgc gaaacagtcc acggcggcgc aactccggca acaccagttc
     1141 gatgaaatcc gtcaggctgc caggcaggac cgcgggcatg atgttgtagc cgtctgcccc
     1201 atattggacg aagcgttctt ccagttgatc cgcgatctgc tcgggcgttc cgaccacttg
     1261 ccaatgtccg cgagcgcccg ctacgcgcag ataaagctgg cgaatcgtca ggttttcgcg
     1321 ccgtgccaat tcaagcgtga gcagttgacg gctcttgctc gcgttagttt ccggcagctc
     1381 gggaatcgga ccatcgagcg ggtaagccga caagtcgaaa cccccggtaa ggcccgagac
     1441 gagcgcaagg cccaccgcag ggtcgatcaa cgattgcaaa tgctcgaact tctcgcgtgc
     1501 ctcgctttcg gtgcgcccga caataggcat cacgcccggc atgatcttca gctcatcggg
     1561 atgacgcccg tgttgttgga ggcggccttt gacatcggca taaaaatcga tcgcgtcctg
     1621 aagggtttgc tgcgccgtga agataacctc ggcggtgcga gcggccaatg cccggccagc
     1681 ttccgatgag cccgcttgca cgaccaccgg ttgaccttgc ggcgagcgcg ctacgttcaa
     1741 cggccccttg acctggaaaa agcgtccttt gtgatcgagg acatggcgct tggcgggatt
     1801 gaagaagcgg ccttgctctt tgtcgcgcaa gaatgcatcg tcctcccaac tatcccaaag
     1861 ccggtcgacg acttccgcaa actcggtcgc ccgctcatag cgctccgaat gatcgaaatg
     1921 ccggtcgcga ttgaagttct tcgcttcatg ctcattcgaa gaagtaacga ggttccatcc
     1981 cgcgcgaccg ccgctgatat ggtcgagcga ggcgaacttg cgggctatgt gatacggctc
     2041 gttgaaactg gtcgacgccg tgccgaccag gccgatgtct tccgtcacgg cagccagtgc
     2101 ggacagcagc gtgatcggct cgaactgcgc gatgtagctg tgcgcggtgc ggctcaggaa
     2161 gtccaggtta tcgcctcggg tacccacgcc atcggcgaga aacagaagat cgaatttagc
     2221 tgcttgcgcc gcttgggcga gccgcacgta gtgccggaaa tt
//
LOCUS       DATGBK010000299         1581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_235068, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000299 DATGBK010000000
VERSION     DATGBK010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235068"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..1411
                     /locus_tag="VKJ77_04450"
     CDS             65..1411
                     /locus_tag="VKJ77_04450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44558.1"
                     /translation="MPDSAVNPALQVADAAGSHRTDAVSASTGKSTSAGRPAESDADA
                     KLARAARSAQRLALLSRAPYGAPTLDLFAEDAERATLQALNTDIRQSSLPGFELPEVF
                     MAAVPAEDGSFGVVRTWRSGALSVDGAGVSSVAVARDDAAATQTEGQAPDAATLELMF
                     YDVLAPHEMVAGPVQPEPLDDGAQAGPVVTASGAGNAQGSNKRASAARTRGAARNVST
                     TGPTPAAATAEVETVDGKSEPSDAVTQVLNRSPEASSASSASNTATKPATPPPLRNAA
                     RVAAPPHREQPQSLAAALINDDRRTRTSAASASSAPQAPSREASELDTARATAYADTI
                     DALYAVIADQRGAAAALSRRLNTVLMIVICVLLVTAGAAVAQSIALARLTRENTAQQQ
                     RIEQLLLDQQATLASFFDTDSATIEVPNRGSSNASATNKKPDSMPQSRVAKRAQSK"
BASE COUNT          288 a          517 c          503 g          273 t
ORIGIN      
        1 cgcttcatcg ggcgtgtttt taaccgcccg ggtcgcgtct ggccgcgctg tcaatcatcg
       61 acttatgcca gattccgccg taaatcccgc tctgcaggtt gctgatgccg ctggttcgca
      121 tcgtaccgac gctgtttccg cttccactgg taaatctacg tctgctggcc gtccggctga
      181 atcagatgcc gatgccaagc tcgcccgcgc cgcacgctcg gcgcaacgtc tcgcgttgct
      241 gagccgggcg ccctacggcg cgcccacgct cgatctgttc gccgaagacg ctgagcgcgc
      301 cacgctccag gcgttgaata ccgatatccg tcaatcttcg ttgcccggct tcgagttgcc
      361 cgaggttttc atggcggccg tgccggccga ggacggatcg ttcggcgtgg tgcggacgtg
      421 gcgaagcggg gctttatcgg tggatggggc gggtgtgtcg agcgttgctg tggcgcgcga
      481 tgatgcggct gcgacgcaaa cggagggcca ggcgcccgac gcggcgacgc tggaactcat
      541 gttttacgat gttctcgcgc cccatgagat ggttgccggg ccggtccagc ccgaaccgct
      601 ggacgacggt gcgcaggcgg ggccggtggt gactgcatcg ggtgccggga acgcgcaggg
      661 ttcgaacaag cgcgcgtccg cggcgcgtac cagaggcgcc gcccggaacg tgtcgacgac
      721 cggaccgacg ccagccgctg caacggcaga ggttgagacg gtggacggta aaagcgagcc
      781 gagcgatgct gttacccaag ttctgaaccg ttcgccggag gcatcaagcg catcaagcgc
      841 atcaaacacc gccacgaagc cggccacacc gccgcccctt cgcaacgctg cgcgagtcgc
      901 agcacccccc catcgcgagc agccgcaatc cctggcggcg gcactaatca acgatgaccg
      961 ccggacgcgt acgagtgccg caagcgcctc aagcgcccct caagcgcctt cccgcgaagc
     1021 gtcggaactc gatactgccc gagcgaccgc atacgcggac acaatcgacg cgttgtatgc
     1081 cgtgatcgcg gaccagcgcg gcgcggcggc cgctttgtcg cggcgactaa atactgtctt
     1141 gatgatcgtg atctgcgtgt tgctcgtgac ggccggtgcg gctgtggcgc agagcatcgc
     1201 gctggctcgc ctgacgcgtg aaaacacggc gcagcagcag cgcatcgagc aattgttgct
     1261 tgatcagcag gccacgctgg cgtctttctt cgataccgat tccgccacca tcgaggttcc
     1321 gaaccggggc agctcgaacg catctgctac taacaagaag ccggactcca tgccgcaaag
     1381 ccgtgtcgcg aagcgggctc aaagcaaata gcattgatat tgaagacgcg catgggcgat
     1441 gccacggcgc gcgatcaacg cgcagtaaaa gcagccctgt gtgcacgtcc aaccccaatc
     1501 actcgacgaa ttcgataatc gtgttgccgg cgacttcggc agctacggca acgccgcgag
     1561 cccttccacc atgcgtgacg a
//
LOCUS       DATGBK010000300         1812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_119457, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000300 DATGBK010000000
VERSION     DATGBK010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119457"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VKJ77_04455"
     CDS             complement(<1..218)
                     /locus_tag="VKJ77_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007737433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44559.1"
                     /translation="MKIVVIGHGMVGHKLLECLAENAAHGLDITVLCEEPRPAYDRVH
                     LSEFFSGKTAQDLSLVEPGFFERENVRL"
     gene            complement(232..1560)
                     /locus_tag="VKJ77_04460"
     CDS             complement(232..1560)
                     /locus_tag="VKJ77_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006494732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44560.1"
                     /translation="MADKATRIDLFSLRTVPMRAFHLTWMAFFVCFFAWFACAPLMPV
                     IKREFGLTIDQVANINIAAVAATILVRLIIGPMCDRYGPRKVYTGLLILGAFPVFGAA
                     LSGGYESFLLCRLGIGAVGASFVITQYHTSVMFAPNVVGTANATSAGWGNAGAGAAQM
                     LVPLLLAGMLALGAADASAWRLALVVPGLAMPVMAWFYWRFTQDCPQGNFTQLRAQGI
                     AIDGGKKGGWASFRTACANYRVWMLFVTYAACFGVEVFIHNVAAIYYVDHFHLSLKAA
                     GVAAGSFGLLALFARALGGWLSDKAAARRGLEIRSTLLFVLIAGEGLGLFWFSHADSV
                     VLAVIAMLSFGLFTHMACGATYALVPFIDRKALGGVAGIIGAGGNVGAVAAGFLMKGF
                     GSVQQTLAMLGMLVTLSALCALAVRFSSEHKAQEAVLRADALGANNSIAN"
BASE COUNT          400 a          577 c          537 g          298 t
ORIGIN      
        1 tcgagccgca cgttctcgcg ctcgaagaat cccggctcga ccagcgacag gtcctgcgcc
       61 gtttttcccg agaagaattc cgacagatgc acgcggtcgt aagccggccg gggttcttcg
      121 cacagcacgg tgatatcgag tccgtgcgct gcgttttccg cgagacattc gaggagctta
      181 tggccgacca tgccgtggcc gataacgacg attttcatga tcaggacgct ctcaattagc
      241 aatgctgtta ttggcaccca atgcatctgc acgcagcaca gcttcctgtg ccttgtgctc
      301 ggaactaaag cgcaccgcga gtgcgcataa cgcggacaac gtgaccagca tcccgagcat
      361 ggcgagcgtc tgctgaacac tgccaaagcc cttcatcagg aacccggccg ccactgcacc
      421 cacgttgccg cccgcgccaa taatccccgc cacgccgccc agcgccttac ggtcgatgaa
      481 cggcacgagc gcgtaggtcg cgccacacgc catgtgcgtg aacagtccga agctcagcat
      541 ggcgatcacg gcgagcacca cgctgtccgc atgcgagaac cagaaaagcc cgaggccttc
      601 gcctgcgatc agcacgaaca gcaaggtcga gcgaatctcc agaccacggc gtgccgcggc
      661 cttgtccgag agccagccgc cgagcgcgcg tgcaaacagc gcgagcagtc cgaagctgcc
      721 agcagcgaca ccggcggctt tcagcgataa atgaaagtga tcgacgtaat agatcgcggc
      781 gacgttgtgg ataaacactt cgacgccaaa gcaagccgca taggtgacaa aaagcatcca
      841 cacccggtag ttagcgcagg cggtacgaaa gctcgcccag ccgcccttct tgccgccgtc
      901 gatagcgatg ccttgcgcgc gcaattgcgt gaagttgcct tgcgggcagt cctgcgtgaa
      961 gcgccagtag aaccaggcca tcaccggcat ggccagcccg ggaacgacga gcgccaggcg
     1021 ccaagcggat gcatcggcgg cgccgagcgc gagcatgccc gcgagcagca acggcacgag
     1081 catttgcgcc gcgccggccc ccgcattgcc ccaaccggcg ctggtcgcgt tagccgtgcc
     1141 gaccacgttc ggcgcgaaca tcaccgacgt gtggtactgc gtaataacga agctcgctcc
     1201 cacggcgcca atgcccaggc ggcacagcag gaagctttca taaccgcccg agagcgccgc
     1261 gccaaacacg gggaatgcgc cgaggatcag cagtcccgta taaaccttgc gcggaccgta
     1321 gcggtcgcac atcgggccaa taatgagtct taccaggatc gtcgcggcaa ccgcggcgat
     1381 gttgatattg gcaacctgat cgatggtcag gccaaactcg cgcttgatca ccggcatcag
     1441 cggtgcacag gcgaaccacg caaagaagca gacgaagaac gccatccacg tgaggtggaa
     1501 agcgcgcatg ggcacggtgc gcaggctgaa gagatcgatc cgggttgctt tgtctgccat
     1561 tgtctttcca caaaacaaaa aggcgtcccg tgaaacccag ccgatgactg agttcagggg
     1621 acgccgttgt ccaaaaagcc cgtcacgggc cactgctgaa gccttgcaat gaaactggac
     1681 cgtcgttggt ccatgaacgc tctggttgca aggcctatgc catgcgcggc gtctctatag
     1741 ttggcgggcg tttgcgggca acagcgtatt tttagccgat tgcggttggt gcattttgat
     1801 gcagcgccgc ac
//
LOCUS       DATGBK010000301         2188 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_235085, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000301 DATGBK010000000
VERSION     DATGBK010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235085"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..935
                     /locus_tag="VKJ77_04465"
     CDS             <1..935
                     /locus_tag="VKJ77_04465"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44561.1"
                     /translation="AGFLPGIILYFTYWFPAKRRARINALFMTSISISGVIGGPLSGF
                     IMTRFAGVGGLAGWQWLFLLEGLPTALLGLLVLAILDDRIASAKWLSAEEKAVLQANL
                     DREDHGTSHKFIDAMRQPGTLLLSLIYLFMLMGLYGLTFWMPQLIKNTGITSPMTIGL
                     LTAIPYAAAGIGMVALGRSSDRHGERRWHLGLAVGVGGIGYILSAYFAHDTTLAMISL
                     VIAAVGAIGCLPVFWTLPPAFLGGTAAAGGIALINSIGNLGGIISPYLVGKVVDITGV
                     PSGGLYAIAAVLILAALLILFGLPARIANRDQAL"
     gene            988..1818
                     /locus_tag="VKJ77_04470"
     CDS             988..1818
                     /locus_tag="VKJ77_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006390212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC44562.1"
                     /translation="MNTVLKPSRTASDESTDGPRYAAPALEKGLDILDVLVDTAEGYT
                     LNELSVKLGRTVSEIFRMVVTLERRGYVQGDHNDRYTLTLKLFEMAHRQQPIRSLTAM
                     ALPLLRDLANVTRQSCHLSIYHSGRVAVIAQVDSPERWSFGLKVGAVMGLTDTSSGHV
                     LLAFRDLAERERMLAAHTRVEGENDVEPAVLLALLDEIRATGHEIVPSRQMRGVTNVA
                     FPVIGSSGDAVAAVNVPYLERIDKKINPEFDEVCRMVGEMTGRLSALMGFSGYNLEGE
                     "
BASE COUNT          416 a          655 c          650 g          467 t
ORIGIN      
        1 aagcaggatt tttgccgggc atcatcctgt acttcacgta ctggttccct gccaagcggc
       61 gagcgcgtat caatgcgctt ttcatgacgt cgatctccat ctcgggcgtg atcggcggcc
      121 ctttgtcggg ctttatcatg acgcgcttcg caggtgtagg cggactcgcg ggctggcagt
      181 ggctgttctt gctcgaaggg ttgccgaccg ccctgctagg cttgctggtg ctcgcgattc
      241 tcgatgaccg cattgccagc gcgaagtggc tcagcgccga agagaaggct gttttgcaag
      301 ccaacctgga tcgcgaagat catggaacgt cgcataaatt catcgacgcg atgcgccagc
      361 ccggcacgct gctgctctcg ctgatctatc tgttcatgct gatgggactg tatggcctga
      421 cgttctggat gccgcaactg atcaagaaca ccggcatcac cagtccgatg accatcggtc
      481 tgctgaccgc aattccgtat gcggcagcgg gcatcggcat ggtggcgctc ggcaggagtt
      541 cggaccggca cggcgagcgc cgctggcacc tcgggctggc ggtcggcgtg ggtggcatcg
      601 gttatatcct gagcgcgtat ttcgcccatg acaccacgct tgccatgatc tcgctcgtga
      661 ttgccgccgt gggcgcgatc ggctgcctgc cagtgttctg gaccttgccg cctgcgtttc
      721 tgggcggcac ggcagcggcc ggcggcattg cgctgatcaa ctccatcggc aatctgggcg
      781 gcatcatcag cccgtatctg gtcggtaagg tggtggatat taccggcgta ccgtcaggcg
      841 gtctgtacgc gatcgcggcg gtcctgatcc tcgcggccct gctgatcctg ttcggcttgc
      901 ccgcccgtat tgccaaccgc gatcaagcgc tttgacggtc tcggtccgct tgatgacgac
      961 gcgctctttt tcggtcccac cattgccatg aatacagtcc tgaaaccttc ccggaccgcg
     1021 tccgacgaga gcactgacgg cccacgttac gcggcccccg ccctcgaaaa aggactcgat
     1081 attctcgacg tgctcgtgga caccgccgag ggttacacgc tcaacgaact gtctgtgaaa
     1141 ctcggccgca ccgtgagcga aatctttcgc atggtcgtga cgctcgagcg ccgcggttat
     1201 gtgcaaggcg atcataacga ccgctatacg ctgacgctca agctgttcga gatggcgcac
     1261 cggcaacagc ccattcgatc gctgaccgcc atggcgctgc cgttgctgcg cgatctggct
     1321 aacgtgacgc ggcagtcgtg tcatttgtcg atctatcaca gcggccgcgt cgcggtcatc
     1381 gcgcaagtcg acagtcccga gcgatggtcc ttcgggctga aggtcggcgc ggtgatgggg
     1441 ttgaccgata cctcgtcagg ccacgtgctg ctcgctttcc gcgatctcgc cgagcgggag
     1501 cgaatgctcg ccgcgcatac acgcgttgaa ggcgagaacg acgtggaacc agcggtcttg
     1561 ctggcgttgc tcgacgaaat tcgcgcgacc ggacatgaga tcgtgcccag ccggcaaatg
     1621 cgcggcgtga ccaacgtggc attcccggtg atcgggagca gcggcgacgc cgtggcggcg
     1681 gtcaacgtgc cgtatctcga acgtatcgat aaaaagatca atcccgagtt cgacgaggtc
     1741 tgcaggatgg tcggcgagat gaccgggcgc ttgtccgcgc tcatggggtt cagcggttac
     1801 aacctcgaag gcgaataaac gttgcttgca ttggcacggg cgcctgaagg ccgtcattcg
     1861 agcgcccgtt cgtgcattta gaatccgtgc gatcgttatt gtctgatgaa taagcgagat
     1921 ttttaagcgt ttagagaata aaaaatagaa aataaatcga tccgctttca ccgccattta
     1981 atcgcgttga cgaaataaat gcgcaaccgt ataaaaccag caacgccgct cgcccttacg
     2041 cagtctttca atactccgac gccgctattc ctggttcaac ccgaatgcgc ccgatcgatc
     2101 caaccattca gcccacggtg aagacatcat gcgacagacc aaaatctcga tttgcgtgcc
     2161 aacgtgcaac agacccgatc tgctgatg
//
LOCUS       DATGBK010000302         1809 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_142561, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000302 DATGBK010000000
VERSION     DATGBK010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142561"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1616)
                     /gene="recN"
                     /locus_tag="VKJ77_04475"
     CDS             complement(<1..1616)
                     /gene="recN"
                     /locus_tag="VKJ77_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009889240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HMC44563.1"
                     /translation="MLRHLSIRDFVIVAALDLEFERGFTVFSGETGAGKSILIDALAL
                     TLGARADASIVRTGEARADITAEFSTHAQVSRWLDEHALAVGDADTVMLRRVVDSSGR
                     SRAFINGTPATLVQLRELSEMLVDIHGQHAHQLLMRPDAQRELFDTHAGLLDSAQKVA
                     RAHRIWRDATHAVELAQNRDRELQLERERLAWQLSELDKLAPQPGEWEDVSAEHHRLS
                     HSASLIDGVQGALNALSESDEAMITQLSAIVSKLRSLVDIDPALADVLASLEPAEIQL
                     QEASYSLSHYAQRLELDPNRLAQVEHRMEQLHSAARKFRMQPEALPEEHAERRRQLAA
                     LDAAADLDALRAAVTKAKEAYLAEATVLSKARGKAAKSLGKAVTKGMQELSMVGGSFE
                     VALVPLAEGGANGLEQIEFRVAGHAGVTLRPLAKVASGGELARISLALAVIASTASPT
                     PTLIFDEVDTGIGGGVAEVVGRLLHQLGRDRQVLCVTHLPQVAARGDHHFQVAKAGDS
                     AGGTVSTVTPLDKSKRVEEVARMLGGLEITA"
     gene            complement(1624..>1809)
                     /gene="ppnK"
                     /locus_tag="VKJ77_04480"
     CDS             complement(1624..>1809)
                     /gene="ppnK"
                     /locus_tag="VKJ77_04480"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338093.1"
                     /note="catalyzes the phosphorylation of NAD to NADP;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HMC44564.1"
                     /translation="DVNVNFDMQSFTAVELNDTIEVRRSRHTVPVLHPVGYSHYATLR
                     KKLHWNEYPSHEDATKL"
BASE COUNT          322 a          596 c          545 g          346 t
ORIGIN      
        1 gccgtgattt cgagcccgcc taacatgcgc gcgacttcct ccacccgttt cgacttatcc
       61 agcggcgtaa cggtgctaac cgttcccccc gcggaatcac cggcttttgc cacctggaag
      121 tgatgatcgc cgcgtgccgc gacttgcggc aaatgcgtga cgcacagcac ttgccgatcg
      181 cggccgagct gatgcagcaa acgtcctacg acttccgcga cgccgccgcc aattcccgta
      241 tccacttcgt cgaaaatcaa tgtgggggtc gggctcgccg tgcttgcaat caccgccaac
      301 gccagactga tccgagcgag ttcgccgcca gacgcgacct tcgccaacgg ccgcaaggtc
      361 acgcccgcat gcccggctac ccggaactcg atctgctcga gcccgttcgc accgccctcc
      421 gcaagcggca cgagcgcgac ttcaaagctc ccgcccacca tcgataattc ctgcatgccc
      481 ttggtgactg ccttgccaag cgactttgca gctttcccgc gcgccttcga caacaccgtc
      541 gcttcggcga gataagcttc tttcgctttc gtcacggcgg cgcgcagtgc gtcgagatcg
      601 gcggcggcat cgagcgccgc cagctgtctg cgccgctccg catgctcctc aggcaacgcc
      661 tcgggttgca tgcggaactt gcgcgcggcc gaatgcagtt gctccatccg atgctcgacc
      721 tgcgcgaggc ggttcggatc gagttcgagc cgctgcgcgt agtgcgagag cgaatacgac
      781 gcttcctgca attgaatttc ggcaggctcg agcgaagcca gcacgtcggc gagggctgga
      841 tcaatatcga cgagactgcg cagcttcgac acgatcgcgg aaagctgcgt gatcatggct
      901 tcgtccgact cggacagcgc gttcagcgca ccctgcacac cgtcgatcaa actcgccgaa
      961 tgcgacagcc gatgatgctc tgcgctgacg tcttcccact cacccggctg cggcgcaagt
     1021 ttgtcgagtt cactcagttg ccatgcgaga cgctcgcgtt ccagttgcaa ctcgcgatcg
     1081 cggttctgcg cgagttccac cgcatgcgtt gcgtcgcgcc agatccgatg cgcccgcgct
     1141 actttctgcg ccgagtccag aaggcccgcg tgggtatcga agagttcgcg ctgggcgtcc
     1201 gggcgcatca gcaattgatg agcgtgctgg ccgtggatgt cgacgagcat ttcgctcagt
     1261 tcacgcaatt gcacgagcgt ggccggcgta ccgttgatga acgcccgcga acgtccgctt
     1321 gaatcaacta cgcgccgcag catgaccgtg tcggcgtcgc cgacagccag cgcgtgctcg
     1381 tccagccagc gcgagacttg cgcgtgggtt gaaaactcgg ccgtgatgtc cgcgcgcgct
     1441 tcgccggtcc gcacgatgct ggcgtcggcg cgcgcgccga gcgtgagcgc gagcgcatcg
     1501 ataagaatcg acttgccggc gccggtctcg cctgaaaata cggtgaagcc gcgctcgaac
     1561 tcaaggtcta gcgcggcgac aatgacgaag tcgcgaatcg agagatgacg gagcatgggc
     1621 gtcttagagt ttcgtggcgt cttcgtgcga gggatattcg ttccagtgca gcttcttgcg
     1681 cagcgtggcg taatggctat agccgaccgg gtgtaacacc ggcacggtat ggcgcgaacg
     1741 ccgcacttca atggtgtcgt tcagttcgac cgcggtaaac gactgcatgt cgaaattcac
     1801 gttcacgtc
//
LOCUS       DATGBK010000303         1540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_211712, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000303 DATGBK010000000
VERSION     DATGBK010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211712"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1540
                     /locus_tag="VKJ77_04485"
     CDS             <1..>1540
                     /locus_tag="VKJ77_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015600251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HMC44565.1"
                     /translation="ELAGWNGIGFVVQAYQKRCPFVIDYLIDLARRSRHRIMVRLVKG
                     AYWDSEIKRAQVDGLEGYPVYTRKIYTDISYVACAKKLLAAPDAVYPQFATHNAFTLS
                     AIYHLAGGNYYPGQYEFQCLHGMGEPLYEEVTGRDKLNRPCRVYAPVGTHETLLAYLV
                     RRLLENGANTSFVNRIADKTIPVSELVQDPIDEASKLTPLGLPHAKIALPRQLFGNER
                     LNSMGFDLSNEHRLASLSSALLASANHPWRAAPMLEAADVVEGVARDVRNPADLRDLV
                     GTVVEATSGQVALALSNAVAAAPIWQSTPVDERADCLARAADLLEAQMHTLMGLVVRE
                     AGKSLANAVSEIREAIDFLRYYSAQIRSEFSNDTHRPLGPVVCISPWNFPLAIFMGQV
                     AAALAAGNPVLAKPAEQTPLIAAQAVRILREAGVPPGAVQLLPGNGETVGAALVADPR
                     TRAVMFTGSTEVARLINKTLSERLDPDGRPIPLIAETGGQNSMIVDSSALAEQVVADV
                     LQSSF"
BASE COUNT          275 a          471 c          486 g          308 t
ORIGIN      
        1 ggaactggct ggctggaacg gtattggttt cgtggtgcag gcttatcaga agcgctgccc
       61 gtttgtgatc gattatttga tcgatctcgc gcgtcgcagc cgtcatcgga tcatggttcg
      121 gctggttaaa ggcgcttact gggattcgga aatcaagcgc gcgcaagtcg atggcctcga
      181 aggctatccc gtctacacgc gcaagatcta tacggacatc tcgtacgtcg cctgcgcgaa
      241 aaaactgctc gctgcgccgg atgccgtgta tccgcaattc gccacgcaca acgcattcac
      301 gctgtcggct atctatcacc tcgccggggg gaattattac cccggccagt acgagttcca
      361 gtgcctgcac ggcatgggcg aaccgctgta cgaagaagtc acggggcgcg acaagctcaa
      421 ccggccgtgt cgcgtgtatg cgcccgtcgg cacgcatgaa acgctgctcg cgtatctcgt
      481 gcgccgcttg ctcgagaacg gcgcgaatac gtcgttcgtg aaccgtatcg ccgataaaac
      541 gattccggtc agcgagctcg tgcaggatcc tatcgacgaa gcgtccaagc tcacgccgct
      601 cggtctgccg catgcaaaga tcgcgctgcc gcgtcagctg ttcggcaacg agcgcctcaa
      661 ttcgatgggc ttcgatctgt cgaatgagca tcggttggcg tcgttgtcat cggcgttgct
      721 cgcgagcgcg aatcatccgt ggcgcgcggc tccgatgctc gaagccgctg acgtagtgga
      781 aggcgtcgca cgcgatgtcc gcaatccggc ggacttgcgc gatctggtcg gaaccgtggt
      841 tgaggcaaca tccgggcaag ttgctctcgc tctgagtaac gctgtcgccg ccgcgccgat
      901 ctggcaatcg acgcccgtcg atgaacgtgc cgattgcctc gcccgcgcag ccgatctgct
      961 cgaagcacag atgcatacgc tgatgggtct cgtcgtgcgc gaagcgggta aatcgctggc
     1021 gaatgcggtg tccgagattc gtgaggctat cgacttcctg cgttattact cggcgcagat
     1081 tcgcagcgag ttttccaacg atacgcaccg tccgctcggc cccgtggttt gcatcagccc
     1141 ttggaacttc ccgctcgcga tcttcatggg acaagtcgcg gccgcgctcg ctgccggcaa
     1201 tccggtgctg gcgaagccgg ccgaacagac gccgctgatc gcagcgcaag cggtgcgcat
     1261 cctgcgcgaa gccggcgtac cgccgggcgc ggtgcaactg ctgccgggca atggtgaaac
     1321 cgtgggtgcg gcgctggtcg ccgatccgcg cacgcgtgcc gtgatgttca caggttcgac
     1381 ggaagtcgcg cgcctgatca acaagacctt gtccgaacgg ctcgacccgg atggccggcc
     1441 aattccgctg atcgcggaga cgggcggaca gaattcgatg attgtcgatt cgtcggcgct
     1501 ggccgagcaa gtggtcgcgg acgtgctgca atcgtccttc
//
LOCUS       DATGBK010000304         3240 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_26938, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000304 DATGBK010000000
VERSION     DATGBK010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3240
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26938"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..832)
                     /locus_tag="VKJ77_04490"
     CDS             complement(<1..832)
                     /locus_tag="VKJ77_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004552863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44566.1"
                     /translation="MADTALSTSADTRRRVLAIVGASSGNLVEWFDFYIYSFLALYFA
                     PAFFPSGNPTTQLLNTAGVFAAGFLMRPIGGWMFGRIADKHGRRTSMMISVLMMCAGS
                     LVICFLPTYASIGAWAPFFLLIARLFQGLSVGGEYGTSATYMSEVALQGRRGFFASFQ
                     YVTLIGGQLAALLVLVVLQQLLTTEELRAWGWRIPFGIGALAAVVSLYLRKSLDETTT
                     AETRKLKEAGTLRGLMQHKGAFLTVIGFTAGGSLIFYTFTTYMQKYLVNTAGMHAKTA
                     S"
     gene            1276..2307
                     /locus_tag="VKJ77_04495"
     CDS             1276..2307
                     /locus_tag="VKJ77_04495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HMC44567.1"
                     /translation="MDPQSHQTHHTLDAALASKFARLALGHLTREYPNKLDHVMGRAA
                     DAQGPRALHPIFYGSFDWHSCVHGYWLIARLVDRFPTLPEAPDIRALIDSHFTHANVA
                     AEVAYLHRPEARGFERPYGWAWLLSLAGQLHSMQSTEGQRWSVALAPLAHAFVERFTE
                     YLPKLTYPLRVGTHFNTAFALTLAIGYARQVGDTAFETLISDTARRWHLNDADCQAWE
                     PGGDEFLSSSLMEAELMRRVLPPAEFAGWFDRFLPRLDASEPATLFVPATVTDRTDGK
                     LAHLDGLNLSRAWCQRSLARALPEGDVRIGLLDATANAHLAEGLAHVAGDYMGEHWLA
                     TFALLALEA"
     gene            complement(2356..2676)
                     /locus_tag="VKJ77_04500"
     CDS             complement(2356..2676)
                     /locus_tag="VKJ77_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YnfA family protein"
                     /protein_id="HMC44568.1"
                     /translation="MKTFLLYVVTAIAEIVGCYFPYRWLKEDGSPWLLIPGALALALF
                     AWLLTLHASAAGRVYAAYGGVYIAVAIMWLWIVERIRPTSWDLAGVAIALAGMSVIAF
                     QPRG"
     gene            complement(2740..>3240)
                     /locus_tag="VKJ77_04505"
     CDS             complement(2740..>3240)
                     /locus_tag="VKJ77_04505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC44569.1"
                     /translation="KAKGVPSISIDDWYTRELKTSADGIRKYEQATYYAGHWDSRYEP
                     WVQMLAGMYRGSGKDVVAWNSALLYDMIYTQPVVYEFGQIRTPTLFLIGDKDTTAIGK
                     DLAPPEIRPTLGRYPELAKRAVEAIPGAKLVEFAELGHAPQMQDPRAFHQALLAGLAA
                     LGENGN"
BASE COUNT          663 a         1013 c          944 g          620 t
ORIGIN      
        1 tgctggccgt cttggcatgc atgccggcgg tgttcaccag atacttctgc atgtacgtgg
       61 tgaacgtgta gaagatcagc gatccacccg ccgtgaaacc aatcacggtg agaaatgcgc
      121 ccttatgttg catgagacca cgaagcgtgc cggcctcctt cagcttgcgg gtttcggccg
      181 tggtggtttc atcgagcgat ttccgcaaat acagcgacac taccgccgcg agcgcgccga
      241 tcccgaacgg gatacgccag ccccacgccc tcaattcttc cgtggtcaat aactgctgca
      301 gaacgacaag tacgagcaat gcggcgagct gtccgccgat cagcgtcacg tactggaacg
      361 acgcgaagaa accgcgccgc ccctgcagcg ccacttcgct catgtaggtc gcgctggtgc
      421 cgtattcgcc gcccaccgac aagccctgga acaaccgggc gatcagcagg aagaacggcg
      481 cccatgcacc aatgctcgcg taagtcggca agaagcagat cacgagagac ccggcgcaca
      541 tcatcagcac ggaaatcatc atcgaggtgc gacggccgtg tttgtcggcg atacggccga
      601 acatccagcc gccaatcggc cgcatcagga aacccgctgc aaatacgccc gcggtgttga
      661 gcaactgcgt ggtcgggttc ccgctcggga aaaacgccgg cgcgaagtac agtgcgagga
      721 acgagtagat ataaaagtcg aaccactcga cgagatttcc cgatgaagcg ccgacgatcg
      781 cgaggacgcg tcgccgggtg tcggctgaag ttgagagggc ggtgtcggcc atgctgggtg
      841 aaactcctgt cgcgtgttga aaacggcggc ctgtggccgc tcttgcaccg gtctgatgcc
      901 ggcgacggcc ccgagaggcg ttggcgcgca agtttatacg acgagcagca ggttgacgca
      961 atatgacgat ctccaaaaat tcagcttaca gcttgacttg aagggaaagt tttttgtcag
     1021 aaaacggatc gggagaaatt ccgcgaaagc ctttttatat ttgaattcct gctggatcaa
     1081 cggtttgcgg ccaactgcgc gaaggcactg aacgcttggc gctaaacatt acaatcataa
     1141 aaattgaaag cacatagtaa ttaccctaag acacaaaaaa ctagcccctg cccgcacgat
     1201 gaggcgctct attcacacga tccctgagcc gaagtcttgc cataattgcg gacgcctggt
     1261 tttctggaga accgcatgga cccgcagtcc catcaaacgc atcacacgct cgacgccgcc
     1321 ctggcatcga aattcgcccg gctcgcactt ggccacctga cgcgtgaata cccgaacaag
     1381 ctcgaccacg taatgggccg cgccgccgat gcgcaaggcc cgcgcgccct ccatccaatc
     1441 ttctacggca gcttcgactg gcactcgtgc gttcacggat actggttgat cgcgcggctc
     1501 gtcgaccgct tccccacgtt gccggaagcg ccggacattc gtgcgttgat cgactcccat
     1561 ttcactcatg ccaatgtcgc cgccgaagtc gcgtacctgc accgtccgga ggcgcgtggt
     1621 ttcgagcgtc cgtacggctg ggcgtggctg ctctcgcttg ctggccaact tcactcgatg
     1681 cagtcaacag aaggccaacg ctggtccgtg gcattggcac cgcttgccca cgcgtttgtc
     1741 gaacgtttca cggagtacct gccgaaattg acgtatccgc tgcgggtggg cacgcatttc
     1801 aatacggcgt tcgcgctgac gctggctatc ggttacgcgc gccaggtggg tgacacggcg
     1861 ttcgaaacgc tgatctccga tacagcgcgc cgctggcatc tgaacgatgc ggattgtcag
     1921 gcgtgggaac cgggcggcga tgagttttta tcgtcgtcgc taatggaagc cgagttgatg
     1981 cggcgggtat tgcccccggc cgaattcgcc ggctggttcg accgcttcct gccccggttg
     2041 gacgcgagcg aacccgccac gttgttcgtg ccggccaccg tgacagatcg aaccgacggc
     2101 aagcttgccc acctcgacgg cctgaacctc agccgcgcgt ggtgccagcg ttcgctcgcg
     2161 cgtgcgctgc ccgagggcga cgtgcgtatc ggcttgcttg atgccacagc gaatgctcac
     2221 cttgcagagg gcctggcgca tgtggcgggt gattacatgg gcgagcactg gctcgcgacg
     2281 ttcgcgttgc tggcgctgga ggcctgaccg gctcgacgcc tcgcgttgtt aacgttggat
     2341 ctcacccgct ggatctcacc cgcgcggctg aaacgcgatc acactcatgc cggccagcgc
     2401 gatcgcgacg ccggcgagat cccagctggt cgggcgtatc cgttcgacga tccatagcca
     2461 catgatcgcc acggcgatat acacgccgcc gtacgccgca tacacgcggc cggcggcgct
     2521 ggcatgcaaa gtgagcaacc atgcgaagag tgcgagcgcc agcgcgccgg ggatgagaag
     2581 ccagggcgaa ccgtcctcct tcaaccatcg gtagggaaaa tagcagccca ctatctcggc
     2641 aatggcggtc acaacataca gcaggaacgt cttcatagtg gcagtcgggt tattgtgtgc
     2701 acaaggtgac ttctacgagc ggtttctacc agcgccctct caattgccat tctcaccaag
     2761 cgctgccagc cctgcgagca atgcctgatg aaacgcgcgc gggtcctgca tctgtggcgc
     2821 atgccccagc tccgcaaact cgaccagctt cgcaccggga atcgcctcca ccgcgcgttt
     2881 ggccagctcc ggataacgcc cgagggtcgg cctgatctct ggcggcgcga gatccttgcc
     2941 aatcgcggtt gtgtccttat cgccgatcag gaacaaagtg ggtgtcctga tttgcccaaa
     3001 ctcatacacg accggctggg tataaatcat gtcgtagagc aaggccgaat tccaggcaac
     3061 aacgtccttg cccgaccctc gatacattcc cgccagcatc tgcacccacg gctcataacg
     3121 tgagtcccag tgacccgcgt aatacgtggc ttgctcgtat ttgcgaatgc cgtcggcgct
     3181 ggtcttgagc tcgcgcgtgt accagtcatc gatcgaaatg gacggcacgc ccttcgcctt
//
LOCUS       DATGBK010000305         1961 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_119525, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000305 DATGBK010000000
VERSION     DATGBK010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1961
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119525"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..420
                     /locus_tag="VKJ77_04510"
     CDS             <1..420
                     /locus_tag="VKJ77_04510"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HMC44570.1"
                     /translation="AISLHSFLPLMFVWTPRFYGGWLHQLLGLTQHAGLAVNVKDHRL
                     NTRTVTINPVFRFLYLNMNYHLEHHLLPMVPFHALPRLHEVIKDQLPPAYPSIYAVYR
                     EMVPALWKQRSEPGHVIERKVPVESAPHGSFAAQSGI"
     gene            447..797
                     /locus_tag="VKJ77_04515"
     CDS             447..797
                     /locus_tag="VKJ77_04515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HMC44571.1"
                     /translation="MAVETNDIEWVVACAASEIAEEDVIRFDHAGASYAVYRIAEGFF
                     ASDGWCTHERAHLADGFVLNREIECPLHQGRFDIPTGKPKSPPVCVHLKTYPVRIERG
                     EVLLGLPPQAKAAS"
     gene            794..>1961
                     /locus_tag="VKJ77_04520"
     CDS             794..>1961
                     /locus_tag="VKJ77_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009771190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC44572.1"
                     /translation="MKSQPAMVIIGAGQSGARAAHALRDNGWDGEITLLGNEGVAPYD
                     RPPLSKAVLLGQKTTAQCALYDETFYSEQRIDLRVDASVEKIDRAARKVVLKNGHTIA
                     YQRLLIATGAAPRRLSVPGSTLEGVHVLRTAADASSVVGELLPGRKIAIVGAGFIGLE
                     IAAAAIARGCEVIVIEAAAHALMRAVPEIVAAFLVERHRQMGVDVRFAVQVDQIIGST
                     MKRVTGVKLSDGTTIACDCVIAGIGVKPRTELAEAAGIDVADGIAVDDTLRTNDPHIF
                     AAGDVCSFPHRLFRRRMRLECWRNAEDHARIVARNMLDRGETYSEVPWFWSDQYDMTI
                     QIAGMPAFGVTTVVRETGAASRIFFALDRDGVLVGASGVGQASEIARDVRVAQEL"
BASE COUNT          373 a          583 c          630 g          375 t
ORIGIN      
        1 gctatctcgc tccatagttt cctgccgctg atgttcgtgt ggacgccgcg tttttacggt
       61 ggctggctgc atcagttgct cggactcacg cagcacgcgg gcctcgcggt caacgtgaag
      121 gaccatcggc tgaacacacg cacagtgacc atcaatccgg tctttcgctt tctgtacctg
      181 aacatgaact accacctcga acatcatctg ctgccgatgg tgccgttcca cgcgctgccg
      241 cgtttgcatg aagtcatcaa ggatcagctt ccgcccgcct atccgagtat ttacgcggtg
      301 tatcgcgaga tggtgcccgc gttatggaaa caacgctccg agccgggtca cgtgatcgaa
      361 cgcaaggtgc cggttgaaag cgccccgcac ggctcattcg cggcccaatc gggcatctga
      421 acaattccaa caaccgggag gcttttgtgg ccgtcgaaac gaatgacatt gagtgggtcg
      481 tcgcctgcgc tgccagcgag attgccgaag aagacgtgat ccgcttcgat cacgctggcg
      541 cgagctacgc ggtgtatcgg atagccgagg gtttctttgc gtcggatggc tggtgcacgc
      601 atgaacgcgc gcatctcgcc gatggcttcg tactcaatcg ggagatcgaa tgccctctgc
      661 atcagggacg tttcgatatc cccacaggca agcccaaaag cccgcccgtc tgcgtacatt
      721 tgaagactta tccggtgcgc attgaacgcg gcgaagtgct gctcggccta ccgccgcaag
      781 cgaaagccgc gtcatgaaaa gccaacccgc gatggtgatc atcggcgccg gccaaagcgg
      841 cgcgcgcgcc gcccatgcat tgcgcgataa cggctgggac ggcgaaatca cactgctcgg
      901 caatgaaggg gttgcgcctt atgacaggcc gccgctctcc aaggccgtgc tgctcggtca
      961 gaaaaccacc gcgcagtgtg cgctgtatga cgagacgttt tactccgagc aacgcatcga
     1021 cctgcgtgtc gatgcaagcg ttgaaaagat cgaccgcgca gcgcgcaagg tggttttgaa
     1081 gaacgggcat accatcgcct atcaacgtct gctgatcgcc accggtgcgg cgccgcgtcg
     1141 cttgagcgtg cccggttcaa cgcttgaggg cgtccatgtc ttgcgcacgg ccgcggacgc
     1201 gtcgagtgtc gtcggcgagt tgttgccggg acggaagatc gcgatcgtgg gagcaggatt
     1261 tatcggactg gagatcgccg cagcggccat tgcaagaggc tgtgaggtga tcgtgatcga
     1321 agcggcagcg catgcactca tgcgcgccgt gccggagatt gtcgcggcgt ttctggtgga
     1381 acggcacagg cagatgggcg tggacgtgcg cttcgccgtg caggtcgacc agatcatcgg
     1441 atcgactatg aaacgcgtca cgggcgtgaa gctctcggac ggtacgacca tcgcgtgcga
     1501 ttgcgtgatc gccggcattg gcgtaaagcc gcgcaccgag ctggcggaag cggcgggtat
     1561 cgacgtagcg gacggcatcg ccgtggacga cacgctacgc accaacgatc cgcatatctt
     1621 cgcagccggc gatgtctgct cgttcccgca ccggctattc cggcggcgca tgcggctcga
     1681 gtgctggagg aacgcggagg accatgcgcg cattgtcgcg cgcaacatgc tggaccgtgg
     1741 cgagacctat tccgaagtgc cgtggttctg gtccgatcaa tacgacatga ccatccagat
     1801 tgccggcatg cccgcgttcg gcgtgacgac cgtcgtccgc gagacgggcg ccgcctcacg
     1861 gatcttcttc gcgctggatc gcgacggcgt gctggtcggc gcgagcggtg ttggacaggc
     1921 aagcgagata gcgcgtgacg tgcgagtagc gcaggaattg a
//
LOCUS       DATGBK010000306         2858 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_258295, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000306 DATGBK010000000
VERSION     DATGBK010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2858
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258295"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2346
                     /locus_tag="VKJ77_04525"
     CDS             <1..2346
                     /locus_tag="VKJ77_04525"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC44573.1"
                     /translation="RKESVGLGIQQLPDGNALDVSKQVRATMDRLQAKFPPGMHYKIA
                     FDSTDFVRASIKDVVTTLIVAIILVIAVIFLFLQDWRTTLIPAITIPISLIGTFGLMK
                     FFGFSINTLTLFGLTLATGLVVDDAIVVIENIARFIYEKKMAPYDAAREAMREIGGAV
                     VATSLVLLSVFIPVGFFPGTTGQLYKQFALTIACSIAISLFNALTLTPVLSALLLGRV
                     ERPRNGFFRRVNMIIEGTRKRYDNVLPRVIRFAPLVLGMFVVALIATAVMYKATPTGF
                     VPDEDQGFMIVAAQAPEGTSVDGMLVAQKKIENILLNQPEITDVFDVGGFGFTGNGPN
                     KATMFVRLKPLEERGGGPHGVGAVVGRLYGLLPTVHEAGAFPLNPPAIQGLGFQGGFF
                     FELQDRNNIGLDAMYGDARQIMGMGFQDPIVSQVYTTFRVDSPQLVARIDRVKAKNLG
                     VSLSDIFSTMQVYLGSVYVNDFDLLNRAYRVYVQADAPYRSSIDDLQKIYVRSSTGGI
                     IPLSSLLISTEVRSAPVITHFDLFRSVEFNGGVKPGYGSGDAINEMQKIASTLPAGTG
                     YEWSGISREQIEGGSQALFIFALGIVFTFLVLSAQYESFIDPLIILLSVPLAILGALG
                     AIWIRNLLFAGLTHTFEVSDVYAQVGYIMLVGLASKNAILIVEFANQLRAQGLGITEA
                     VVRAAETRLRPILMTSIAFLLGILPLVVATGNGAASRNSLGTVVFGGMILSTLLNLFV
                     VPVMYVLIINIEERLRPRHGKRPSDDDDVTLPGGRSVRAGV"
     gene            complement(2306..>2858)
                     /locus_tag="VKJ77_04530"
     CDS             complement(2306..>2858)
                     /locus_tag="VKJ77_04530"
                     /inference="COORDINATES: protein motif:HMM:NF014691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HMC44574.1"
                     /translation="PAPRAGIVPPAAWLVPREVDAAIDHLGRGPYEMRIANWIARFMG
                     RIGRIRPFEGGNGRTARLAANLMLRRIDFQPIVFERAERARYVAAIAAAESGEPEQLA
                     DLIVDAVMRSCNRLRAAARASTDPLAPLRELAGDSYAMLAKAAQRGTLRTVTRGGRYF
                     TTRDWIGNYRLTHQRVRSGRPEA"
BASE COUNT          526 a          828 c          867 g          637 t
ORIGIN      
        1 cgcaaagagt ccgtcggcct aggcatccag cagttaccgg acggtaacgc gctcgatgtt
       61 tccaagcaag tgcgggccac gatggatcgt ttgcaggcga aatttccgcc gggcatgcac
      121 tacaagattg cgttcgactc gaccgacttc gtgcgtgctt cgatcaagga tgtcgtcaca
      181 acgctgatcg tcgcgatcat cttggtcatc gcggtcatct tcctgttctt acaggactgg
      241 cgtaccacgc ttatcccggc aatcacgatt ccgatttcgc ttatcggcac gttcgggttg
      301 atgaaatttt tcggattctc gatcaatacg cttacattgt tcgggttaac gctggccacc
      361 ggactcgtgg tcgacgacgc gatcgtcgtc attgagaata tcgcacgctt catctacgag
      421 aagaagatgg cgccgtacga tgcagcgcgc gaagcgatgc gcgaaatcgg cggcgcggtc
      481 gtcgcgacgt cacttgtgct gctgtcggtc ttcattccgg tcggcttctt tccggggacg
      541 acggggcagc tctacaagca gtttgcattg acgatcgcgt gttcaattgc gatctcgctc
      601 tttaacgcgc tcacgctaac gccggttcta tcggcgctac tattgggtcg tgtcgaacgc
      661 cctcgcaacg gattttttcg ccgcgtcaat atgatcatcg agggcacgcg taagcgctac
      721 gataacgtgc tgccgcgcgt cattcgtttc gcgccgctcg tgcttggaat gtttgtcgtc
      781 gcgctcattg cgaccgccgt aatgtataag gcgacgccga cgggcttcgt ccccgacgag
      841 gatcagggct tcatgatcgt cgctgcgcag gcaccggaag gcacctcggt cgacggcatg
      901 ctggtcgcgc agaaaaaaat cgagaacatt cttttgaatc agccggaaat caccgacgtg
      961 ttcgacgtgg gcgggttcgg cttcacgggc aatggcccga acaaggccac gatgttcgtg
     1021 cgccttaagc cgctcgaaga acgcggcggc ggcccgcacg gcgtcggtgc ggtcgtcgga
     1081 cgcctctacg gtttgttgcc gaccgtccac gaagcgggcg cgttcccgct caatccgccc
     1141 gcgattcaag gcctaggttt tcaaggcggc ttcttcttcg aattacaaga ccgcaacaac
     1201 atcggactgg atgccatgta cggcgacgcg cgccaaatta tgggcatggg tttccaggac
     1261 ccgatcgtca gccaagtgta cacgacgttc cgggttgata gcccgcagct cgtggcgcgt
     1321 atcgatcgcg tcaaggcaaa aaatctcggc gtctcgctct ctgatatttt ctcgacgatg
     1381 caagtgtatt tgggctcggt ctacgtcaac gatttcgact tgctcaatcg cgcgtatcgg
     1441 gtgtacgttc aagccgacgc accgtaccgt tcgagcatcg acgatctgca gaagatctac
     1501 gtgcgcagca gtacgggcgg cattatcccg ctgtcgagct tgctcatctc aaccgaggtg
     1561 cgctcagcac ccgtcatcac ccatttcgat ctgttccgat cggtggagtt taacggtgga
     1621 gtaaaacccg gttacggttc gggcgatgcg atcaacgaaa tgcaaaagat tgcgtcgacg
     1681 ctgccggccg gcaccgggta tgagtggagc ggcatctcgc gcgaacaaat cgagggcgga
     1741 agccaagcgc tattcatttt tgcgctcggt atcgtgttca cgtttctcgt gctgtccgcg
     1801 caatacgaga gtttcatcga tccgctcatc atcttgctct cggtgccgct cgcgattctt
     1861 ggggcgctcg gcgcaatctg gattcgtaac ctgctgtttg ccggcttgac gcacacgttt
     1921 gaggtaagcg atgtctacgc gcaggtggga tacatcatgc tcgtggggct tgcgagtaag
     1981 aacgcgattc tgatcgtcga attcgccaat cagctgcgcg cgcaggggct gggaataacc
     2041 gaggcggtcg tgcgcgcggc tgaaacccgg ttgcgcccga ttctcatgac gtcgattgcg
     2101 tttctcttgg gcatcttgcc gctcgttgtt gcaaccggta acggtgctgc ttcgcgcaat
     2161 tcgctgggca cggtcgtgtt cggcggcatg attctctcga cgctgctcaa tctgttcgtc
     2221 gtgccggtga tgtacgtgct gattatcaat atcgaagagc gcttgcgtcc acgccacggc
     2281 aagcggccca gtgacgacga tgacgtcacg cttccgggcg gccgctccgt acgcgctggt
     2341 gtgtaaggcg ataattcccg atccagtcac gcgtcgtaaa atagcggccg ccacgcgtga
     2401 cggtgcgtag cgttccgcgc tgagcggctt ttgcaagcat cgcgtaacta tcgccggcaa
     2461 gttcgcggag cggggcgagc gggtcggtcg acgcccgcgc ggcggcgcgc aaccggttac
     2521 aactgcgcat taccgcatcg acgataaggt cggcgagttg ctcaggctcg ccggattcgg
     2581 cggctgcaat cgcagcgacg tatcgtgcgc gttcggcgcg ttcgaaaacg atcggctgga
     2641 aatcaatgcg tcgcagcatg aggtttgccg cgagtcgcgc ggtgcgtccg ttgccgcctt
     2701 cgaatggccg aatgcggccg atgcggccca taaagcgtgc gatccaattc gcaatccgca
     2761 tttcatacgg gccgcggcca aggtgatcga tggccgcgtc cacttcacgc ggcacgagcc
     2821 acgcggccgg cggtacgatt ccggcgcgtg gggcggga
//
LOCUS       DATGBK010000307         1748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_211792, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000307 DATGBK010000000
VERSION     DATGBK010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211792"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..938)
                     /locus_tag="VKJ77_04535"
     CDS             complement(48..938)
                     /locus_tag="VKJ77_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC44575.1"
                     /translation="MVFKARRNLAARLFLGTIHMAQTWFITGSSSGFGRVLTEKLLAR
                     GDRVAATLRKVHALDDLKEQFGERLWVASLDVTDTEGIRQVTSRAFAELGRIDVVVSN
                     AAYGLVGAAEELSDEQIRLQIDTNLIGSIQVIRAVLPFLRRQGGGRILQVSSEGGQIT
                     YPDFSLYHATKWGIEGFVEAVATEVASFGIEFTIVEPGPAKTSFSGGIVKSTPMAIYD
                     NTPAGDVRRAIEAGSFVLKGDPIKMVQAMIDSVERTPAPLRLTLGSDAFDRVRAGLSK
                     RLAELDAQEDIARSTELTDA"
     gene            1002..>1748
                     /locus_tag="VKJ77_04540"
     CDS             1002..>1748
                     /locus_tag="VKJ77_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006482414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44576.1"
                     /translation="MNDRPALSDLTALAAIVTHRSFRKAADELGVSPSTLSHMMRTLE
                     LKMGVRLLNRTTRSVSPTEAGERLVSRLQPVLRELDLALEEVDAVRSRPSGSLRINAS
                     EPAARLLMQSIVPAFLARYPDMSVDLVTEGRLVDIVAGGFDAGVRLGEALPQDMIAVR
                     FGGPVRFLAVASPAYLAGHTPPLVPDDLKDHACIRVRLPSGKLYRWEFAKHGQGLTVD
                     VPGSLTLDHIGLTIEAAADGMGIAYVPDHSA"
BASE COUNT          340 a          554 c          504 g          350 t
ORIGIN      
        1 acggcagata ttggcgaaca acaacgtcgt ctacgggaaa cactgaatca cgcgtcggta
       61 agctcggtcg accgggcgat gtcttcctgt gcatcgagct cggcaagccg tttcgacaga
      121 ccggcgcgaa cccggtcaaa cgcgtcgctg cccagggtca gccgcagcgg cgcaggcgtg
      181 cgctcgacgc tatctatcat cgcctgcacc atcttgatcg gatcgccttt cagcacgaat
      241 gaaccagctt caattgcgcg ccggacatcg ccggccggag tgttgtcata aatagccatg
      301 ggcgtcgatt tgacaatgcc cccgctgaaa ctcgtttttg cgggacccgg ctccacgatc
      361 gtaaactcga tcccgaacga tgcgacttcc gttgcaaccg cttcgacgaa gccttcaatg
      421 ccccatttcg tcgcgtgata caggctgaag tccggatacg taatttgtcc gccttctgag
      481 gacacctgca gaatccgccc gccgccttgg cgccgcaaaa acggcaacac ggcgcgtatg
      541 acctggatcg agccgatcag gttggtgtcg atctgcaacc ggatctgttc gtcgctcagc
      601 tcttccgctg cgccgaccaa gccgtaagcg gcattactga cgacgacatc gatacgtccc
      661 aactcggcaa atgcccggct ggttacctgc cgaatgcctt ccgtatccgt cacatccagc
      721 gacgccaccc agaggcgctc gccgaattgc tccttcaagt cgtcgagggc gtgcaccttg
      781 cgtaacgtcg ccgccacgcg gtcgccgcgc gccaacaact tctcagtcag cacgcgtccg
      841 aaaccggaag agctgccggt aataaaccat gtttgagcca tgtgaattgt ccccaaaaag
      901 agccgcgcag ccagattgcg gcgcgccttg aagaccatgc tagacctcgt ctattcctga
      961 tactatccgc acgatattgg atgacttggt gaaaattagc catgaatgac cggccggctc
     1021 tgagcgacct gacggcgctg gccgcgatcg tcacgcatcg cagcttccgc aaagcggcgg
     1081 acgaactggg ggtctcgccc tccacgctca gtcacatgat gcgaacgctc gagctgaaaa
     1141 tgggcgtgcg tctgctgaac cgcacgacac gtagcgtctc cccgaccgag gccggcgaac
     1201 gtctcgtctc ccgcttacaa cctgtgctga gggagctcga ccttgcgctg gaagaagtcg
     1261 atgcggtgcg tagtcgtcct agtggatcgc ttcgtatcaa cgccagtgag ccggcggcac
     1321 ggctgctcat gcaatcgatt gtccctgcct tccttgcgcg atatccagac atgtctgtcg
     1381 acctggtaac cgagggccgg ctagtcgata ttgtcgccgg tggtttcgat gccggtgtaa
     1441 gactcggcga agcactgccg caggacatga tcgccgtgcg ctttggcggc ccggtgcgct
     1501 ttcttgcggt cgcgtcgccc gcctatctag ccgggcacac gccgccgctt gtaccggatg
     1561 atctgaagga ccacgcttgc attcgcgttc gcctgcccag cggcaagctt tatcgatggg
     1621 aattcgcgaa gcacggccag gggttgacgg tcgatgtgcc gggttcgctc accctcgacc
     1681 atatcgggtt gacgatcgag gcggcagcgg acggaatggg gattgcgtac gtgccggacc
     1741 attccgct
//
LOCUS       DATGBK010000308         1940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_142637, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000308 DATGBK010000000
VERSION     DATGBK010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142637"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1360)
                     /locus_tag="VKJ77_04545"
     CDS             complement(<1..1360)
                     /locus_tag="VKJ77_04545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HMC44577.1"
                     /translation="MQIYDEMRHEETVRAHYARFSRWLSTQSPETIARKRAEADLLFR
                     RVGITFAVNGDLSGTERLIPFDMIPRIIPGDEWRKMEAGLRQRVRALNMFIRDVYHDH
                     DIVRAGKIPAEQVYTNAQYRPEMQGVDVPLDVYAHVAGVDVVRAGDAGEFYVLEDNLR
                     VPSGVSYMLENRKMMMRLFPELFVQNRIAPVAHYPDLLLETLRSIAPAGVDDPNVVVL
                     TPGMYNSAYFEHSFLAQQMGVELVEGKDLFVDENYVFMRTTQGPKRVDVIYRRLDDDF
                     MDPLAFRTDSALGVPGLLTSYRAGRVALANAMGTGIADDKSIYPFVPDMIEFYLGETP
                     ILNNVPTFQCRKPDDLAYTLAHLPELVVKEVHGAGGYGMLVGPASTKAEIEAFRERLI
                     ARPDGYIAQPTLALSACPTFVESGIAPRHIDLRPFVLSGKEVTMAAGGLTRVALKEGS
                     LVV"
     gene            complement(1694..>1940)
                     /locus_tag="VKJ77_04550"
     CDS             complement(1694..>1940)
                     /locus_tag="VKJ77_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC44578.1"
                     /translation="SYRTDHDRREALTRTVEANRISLQLATDSYRKGLVSFITVLDAE
                     RQLAETRQQLAQSTVSVTTDLIAVYKALGGGWEAANS"
BASE COUNT          363 a          600 c          569 g          408 t
ORIGIN      
        1 tcacgacaag agaaccctcc ttcaacgcca cgcgagtcag gccgcctgca gccatcgtca
       61 cttctttacc cgacagcacg aatggccgca agtcgatatg acgcggcgca atacccgatt
      121 ccacgaaggt cgggcacgcg gaaagcgcca acgtaggctg ggcgatatac ccgtccggcc
      181 gcgcgatcag gcgttcgcgg aacgcctcga tctccgcttt cgtcgatgcc ggtccgacca
      241 gcatgccgta accgcccgcg ccgtgaacct ctttcacaac cagttccgga agatgcgcga
      301 gcgtgtaggc gagatcgtcg ggcttgcggc actggaatgt gggcacgttg ttcaggatcg
      361 gcgtttctcc gagatagaac tcgatcatgt ccgggacgaa cggatagatg gatttatcgt
      421 ccgcgatacc cgtgcccatc gcgttggcca atgccacgcg gcccgcgcga tacgacgtca
      481 gcagacccgg cacgccgagc gccgagtctg tgcggaacgc gagcggatcc atgaagtcat
      541 catccagccg ccgatagatc acgtcgacgc gtttcggccc ttgcgtcgtg cgcatgaaca
      601 cgtagttttc atcgacgaag agatccttgc cctcgaccag ctccacgccc atttgctgcg
      661 cgaggaacga atgctcgaag tacgccgagt tgtacatgcc gggcgtgagc accaccacgt
      721 tggggtcgtc cacgccggcc ggagcgatcg agcgcagcgt ttcgagcagc agatccggat
      781 aatgcgcgac cggggcaatg cggttctgca cgaacaattc ggggaagagc cgcatcatca
      841 tcttgcggtt ttcgagcatg tacgacacgc ccgaaggcac ccggagattg tcttcgagta
      901 cgtagaactc gcccgcgtca cccgcgcgca ccacgtccac gccggcgacg tgcgcgtaga
      961 cgtcgagcgg cacgtccacg ccttgcatct cggggcggta ttgcgcgttc gtgtacacct
     1021 gctcggcggg aatcttcccc gcccggacga tgtcgtgatc gtggtagacg tcgcgaatga
     1081 acatgttcaa cgcgcgtacc cgctgtcgga ggccagcttc catcttgcgc cattcatcgc
     1141 ctgggatgat gcgcggaatc atgtcgaagg gaatcaggcg ctcagtgccc gacaaatcgc
     1201 cgttcaccgc aaacgtgatg ccaacacgcc tgaacagcag atcggcttcc gcgcgcttgc
     1261 gcgcgatggt ttcggggctt tgcgtggaaa gccaccggga gaaacgtgcg tagtgcgccc
     1321 gcacggtttc ctcgtgacgc atttcgtcgt agatctgcat cttgcgtcct ttttaatcgc
     1381 ggcctagtgc cgcctgtgcg tggaaatgcc ggctcgatac ttctcttcaa gctgggccac
     1441 gcctgtccga cgcttcggta gttttagtat ctacaattaa gcaacaggcg tgccattttt
     1501 tccactactt gtttttactc attgttttgg cgggttaggt aggagtttgc ttcaaataag
     1561 tgcgcacggg tgagccgccg tggttgatcg ggatagggga atgcccgatt ttggtgcgga
     1621 aggggggtgg ccgttcgcac tggtgactat ctccagggtc tgtggtccgg cgagtgttag
     1681 ctccctcctc tcttcaacta ttggccgctt cccatccgcc ccccagcgcc ttatatacag
     1741 cgatcaggtc cgtcgtcacg ctcaccgtcg attgcgccag ttgttgccgt gtttcggcca
     1801 actgccgttc ggcatccagg acggtgataa aactcacgag ccccttccga taactatcgg
     1861 tcgcaagctg caaactgatc cggttagcct ctaccgtgcg cgtcagcgcc tcccgacggt
     1921 cgtgatccgt ccggtaggac
//
LOCUS       DATGBK010000309         2760 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_281509, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000309 DATGBK010000000
VERSION     DATGBK010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2760
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281509"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..239
                     /locus_tag="VKJ77_04555"
     CDS             <1..239
                     /locus_tag="VKJ77_04555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44579.1"
                     /translation="IDQGAEHIVFNMTHCFRQAGHTRKHVRCKLRNTVLLLIARTILS
                     NRRPAPFWVSFTRRLQVSVAAMPVNPVLRNFRTF"
     gene            246..1838
                     /locus_tag="VKJ77_04560"
     CDS             246..1838
                     /locus_tag="VKJ77_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44580.1"
                     /translation="MGDAISSSIQPGGALTSRLALHGISKQYPAVKANDDVTLIVEPG
                     EIHAVLGENGAGKSTLMKIIYGAVRPDEGEIRWEGEPVEISSPAAARKLGIGMVFQHF
                     SLFETLTVGENIALALDDKFDLKTLGKRIREVSADYGLDVDPQRHVHSLAVGERQRVE
                     IVRCLLQNPRLLIMDEPTSVLTPQAVKKLFTVLRRLASEGCSILYISHKLDEIQALCQ
                     TATVMRGGRVTGSVDPRKETQASLAQLMVGHSLPDYTRREHTPGEVKLAVKNLSVASA
                     DPFGTSLQDVSFSVHAGEIFGIAGVSGNGQAELLAALSGEIRDKHIAPDAITIVGQPA
                     ARYSAGGRRALGFAFVPEERLGRGAVPAMSLAENALLTGHREHMVHGGWISTKAMRAF
                     ADRCISAFDVRCGGNGALAQSLSGGNLQKFIVGREILQEPKVLVVAQPTWGVDVGAAG
                     FIRQQLLDLAARGVAILVISEELEELFDICDRLAVLARGKLSPVRETGLTNAEEIGLF
                     MAGLFDGNRADPVALDTTAPTQ"
     gene            1835..>2760
                     /locus_tag="VKJ77_04565"
     CDS             1835..>2760
                     /locus_tag="VKJ77_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44581.1"
                     /translation="MNFPYRLEARPTPSRAMQLAVPLVAAVLTLMIGFLIFTIVGQDP
                     VRAMHGFFIEPLSNVNGWSELVLKASPLCLIALGLAVGYRANVWNIGAEGQMLLGGIV
                     AGGIAIHVGDATGWWILPLMMIGGVIGGMAWAAIPALLKSRFNTNEILTSLMLTYVAT
                     QLLIYLVSGPWRDPEGMNFPISAMFGDSALYPRLYGDWGWAWLKGTRINASVFLTVIA
                     IPLVWLFMRKSFAGYRMNVGGLAPLAARYAGFSDKKAIWTSLLLSGGLAGLAGMGEVA
                     GPIGQLQASWSPGYGFTAIIVVFVGRLHPVGIV"
BASE COUNT          489 a          794 c          893 g          584 t
ORIGIN      
        1 tgatcgacca aggtgcagaa catatcgttt ttaatatgac acattgtttc cgtcaagctg
       61 ggcatacccg caagcacgtt cgttgcaagc tgcgcaacac cgtgttgttg ctaattgcgc
      121 gcactatttt gagcaatcga cggcccgcac cattttgggt atcttttact cgcagactgc
      181 aagtttccgt tgctgccatg ccggtcaatc cggttttgcg caatttccgc actttctgag
      241 tccatatggg cgacgccatt tcttcatcca ttcagccggg cggtgcgctt acttcgcgcc
      301 tcgcgcttca cggcatcagc aagcaatatc ccgccgtcaa ggccaatgac gacgtgacgc
      361 ttatcgtcga accgggtgaa attcatgccg tgctcggtga gaacggcgcg ggcaagtcca
      421 cgttgatgaa gatcatctac ggcgcggtgc gtccggacga aggcgagatt cgctgggagg
      481 gcgagcctgt tgagatcagc agtccggcgg cggcgagaaa gcttggcatc ggcatggtgt
      541 tccagcactt ttctctgttc gagacgctga cggtgggcga gaacatcgcc ctcgctctcg
      601 acgataaatt cgatctcaag acgctcggca aacggattcg cgaggtatcg gcggattacg
      661 ggctcgatgt cgatccgcaa cgtcacgtac acagtctcgc ggtaggcgaa cgccagcgcg
      721 tggagatcgt gcgttgcttg ctgcagaacc cgcgcctgct gatcatggac gagcctacgt
      781 ccgtgctcac gccgcaagca gttaaaaagc tctttacggt gctgagacgg ctggcatcgg
      841 agggatgcag cattctctat atcagtcaca agctcgacga aatccaggcg ctgtgccaga
      901 ccgcgaccgt gatgcgcggc ggccgggtga cgggaagcgt ggatccgcgc aaggaaaccc
      961 aagcatcgct cgcacaactg atggttggcc attcgctgcc cgattacaca cgccgcgaac
     1021 acacaccggg cgaggtgaag ctcgcggtga agaacttgtc ggtggcgagc gccgatccgt
     1081 tcggcacgtc gctgcaggac gtctcgttct cggtgcacgc cggggaaatt ttcggcattg
     1141 cgggggtatc ggggaacggg caggccgagt tgctggccgc gctctcaggc gagatccgcg
     1201 ataaacatat tgcgcccgat gccatcacga tcgtcggcca gcccgccgcg cgctacagcg
     1261 cgggcggacg gcgcgcgctc ggcttcgcct tcgtacccga agaacgcctc gggcgcggcg
     1321 cggtgccggc catgtcgctg gcggaaaacg cgttactgac cggacatcgc gaacacatgg
     1381 tgcacggcgg ctggatcagc acgaaggcca tgcgcgcgtt cgcggatcgc tgcatcagtg
     1441 cgttcgatgt ccgctgcggc ggcaatggcg cgctcgcgca aagcctgtcg ggcggcaact
     1501 tgcagaagtt catcgtggga cgcgagatct tgcaggagcc aaaggtgctc gtggtcgcgc
     1561 aaccgacctg gggcgtcgat gtcggggcgg cgggtttcat ccgtcaacaa cttttggatc
     1621 tggccgcgcg cggcgtggcg atcctggtga tttcggagga gctggaagaa ctcttcgata
     1681 tctgcgaccg cctcgccgtt ctcgcgcgcg gcaagctttc cccggtccgc gaaaccggtc
     1741 tgactaacgc agaagaaatc ggcctcttca tggccggtct cttcgatggc aatcgtgccg
     1801 accccgtcgc cctcgacacc acggccccga cacaatgaat tttccttatc gactcgaagc
     1861 gcgcccgacg ccgtcccgtg ccatgcagct tgccgtgccg ctggttgccg cggtgctgac
     1921 gctgatgatt ggctttctga tttttacgat cgtgggccag gatccggtgc gtgcaatgca
     1981 cggttttttc atcgagccat tgtcgaacgt gaatggctgg tctgaactgg ttttgaaggc
     2041 gtcgccgctg tgcctgattg cgctggggtt ggcggtgggg tatcgggcca atgtttggaa
     2101 tatcggcgct gaagggcaaa tgttgctggg cgggatcgtg gcgggtggca tagcgattca
     2161 tgtcggcgac gccaccggct ggtggatcct gccgctgatg atgattggcg gcgtgatagg
     2221 cggcatggcg tgggcggcca ttcccgcgtt gctcaagagc cgtttcaaca ccaacgagat
     2281 cctgacgagc ctgatgctca cctacgtcgc gacgcagttg ctgatctatc tggtcagcgg
     2341 tccatggcgt gaccctgagg gcatgaactt cccgatctcg gcgatgttcg gcgattcggc
     2401 gctatacccc cgcctttacg gcgattgggg ctgggcatgg ctgaagggca cgcggatcaa
     2461 cgcatccgtg ttcctgacgg taatcgcgat tccgctggtg tggctgttca tgcgcaagag
     2521 cttcgcgggg tatcggatga acgtgggtgg gttggcaccg ttggcagccc gctacgccgg
     2581 tttctccgat aaaaaggcca tctggacctc gctgctcctg agcggcggtc tggccgggtt
     2641 ggctggcatg ggtgaagtgg ccggaccgat cgggcaattg caggcgagct ggtcgccggg
     2701 atacggcttc acggcgatca ttgtggtctt cgtcggacgc ttgcatccgg ttggcatcgt
//
LOCUS       DATGBK010000310         1617 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_188940, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000310 DATGBK010000000
VERSION     DATGBK010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188940"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /locus_tag="VKJ77_04570"
     CDS             complement(<1..710)
                     /locus_tag="VKJ77_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HMC44582.1"
                     /translation="MLRRFWLFFAQAVTVLLALMFIVATLKPQWLQRQGTFGKQLAEP
                     IVALQEVAPSIGSRPAQSSYADGAQKAMPAVVNVFSSKDGTLPPDPRAKDPLFRYFFG
                     DKNKRKGDETPASNLGSGVIVSSEGYILTNQHVVDGADQIEVALADGRTSSAKVIGVD
                     PETDLAVLKINMTNLPTITLGRMDQTRVGDVVLAIGNPFGVGQTVTMGIVSALGRNHL
                     GINTFENFIQTDAAINPG"
     gene            731..1477
                     /locus_tag="VKJ77_04575"
     CDS             731..1477
                     /locus_tag="VKJ77_04575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009906350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HMC44583.1"
                     /translation="MDRIELELYLNNLLEIGRFKDYCPNGLQVEGSGRVGKLATGVTA
                     SQAFLDAAIEWGADAVLVHHGYFWKNEAPQVTGRKYRRLKTLLDHDINLFAYHLPLDS
                     HPEFGNNAQLGARLGLIADNRFGDQDLGWIASLPVPLSLEHFTATVENEVGRKPLVFG
                     NPDWELRRVAWCTGGAQGFFDEAIAAGADVYISGEVSEQTMHIAAESGVAYVAAGHHA
                     TERYGVQALGAHVGEHFDIEHVFIDIDNPV"
BASE COUNT          330 a          458 c          483 g          346 t
ORIGIN      
        1 ttacccgggt tgatggccgc gtcggtctgg ataaaattct cgaaggtatt gatgccgagg
       61 tgattgcgcc cgagcgcgct gacaatcccc atggtcaccg tctgcccgac gccgaacgga
      121 ttgccgatcg ccagcaccac gtcgcccacg cgcgtctgat ccatacggcc gagcgtgatg
      181 gtgggcaggt tcgtcatgtt gatcttcagc acggcaagat cggtttccgg atccactccg
      241 atcactttgg ccgacgacgt ccgcccgtca gccagagcaa cttcgatctg atcagcccca
      301 tcgacgacat gttggttcgt tagaatgtag ccttcggagc tgacaatcac gcctgagccg
      361 agattcgacg ccggcgtttc gtcgccctta cgcttgttct tgtcgccgaa gaaatagcgg
      421 aacagcgggt ctttcgcgcg cggatcgggc ggtaacgtgc cgtccttgct cgaaaacacg
      481 ttgaccacgg cgggcatcgc tttctgcgcg ccatccgcat acgacgactg agcgggccgg
      541 gaaccgatgc ttggcgcaac ttcctgcaac gcgacgatcg gttcggcgag ttgcttgccg
      601 aacgttccct ggcgttgaag ccactgcggt ttcaaggtcg cgacgatgaa catcagcgcc
      661 aaaagcacgg tcaccgcttg ggcaaaaaac agccagaagc gtctaagcat ttgatggaat
      721 agaggaattc atggatcgga tcgaactaga attgtatctg aacaatctgc ttgaaatcgg
      781 gcgcttcaag gactattgcc cgaatggtct gcaggttgaa ggctcgggtc gcgtaggcaa
      841 actggcgacc ggcgtaacgg catcgcaggc gttcctggac gcggccattg agtggggcgc
      901 cgacgccgtg ctcgtgcatc acggctactt ctggaagaac gaagcgccgc aggtcacagg
      961 ccgcaaatat cggcggctga agacgctgct ggaccatgac atcaacctgt tcgcttacca
     1021 cctgccgctt gattcgcacc ccgagttcgg caacaacgct cagctcggcg cgcgtcttgg
     1081 cttgatcgcg gacaaccgtt tcggcgacca ggatctcggc tggattgcgt cgttgccggt
     1141 gccgttgtcg cttgagcatt tcaccgcgac ggtcgagaac gaagtcgggc gcaaacctct
     1201 cgtgttcggt aatccggatt gggaactgcg tcgcgtggcg tggtgcacag gcggcgcgca
     1261 aggcttcttc gacgaggcca ttgccgccgg cgccgatgtc tacatcagcg gtgaagtctc
     1321 cgagcagacc atgcacatcg cggcggaaag cggcgtggcc tacgttgcgg cggggcacca
     1381 tgccactgag cggtacggtg ttcaggcgct cggcgcccat gtgggcgagc atttcgatat
     1441 cgagcacgtc tttatcgata tcgataatcc ggtgtgatta tcttgcggtg caataaataa
     1501 tcgaatgggt taaatgaccc cttcattcga tagtcacgat aagtgcgggg aaacccttaa
     1561 gaatgaagga cttcgagcgt tttttgctat tcaactcttg taaatgacga ctccatt
//
LOCUS       DATGBK010000311         2856 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_281540, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000311 DATGBK010000000
VERSION     DATGBK010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2856
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281540"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..578)
                     /gene="purH"
                     /locus_tag="VKJ77_04580"
     CDS             complement(<1..578)
                     /gene="purH"
                     /locus_tag="VKJ77_04580"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069295.1"
                     /note="involved in de novo purine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HMC44584.1"
                     /translation="MIKQALLSVSDKSGIVEFAKSLSELGVSLLSTGGTAKLLAEAGL
                     TVTEVADYTGFPEMLDGRVKTLHPKVHGGILARRDLPEHMAALEQHNIPTIDLLVVNL
                     YPFVQTVSKEECSLEDAIENIDIGGPTMLRSAAKNHRDVTVIVDPSDYAIVLDEMRSA
                     KNTVSYATNFKLATKVFAHTAQYDGAITNYLT"
     gene            complement(675..908)
                     /locus_tag="VKJ77_04585"
     CDS             complement(675..908)
                     /locus_tag="VKJ77_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013436270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HMC44585.1"
                     /translation="MSRHHIEQCVRQSLDNYFQDLDGSKPHDVYEMVISCVEKPMMDV
                     VLKQAEGNQSLAAEFLGINRNTLRKKLQQHGLI"
     gene            complement(905..2017)
                     /gene="dusB"
                     /locus_tag="VKJ77_04590"
     CDS             complement(905..2017)
                     /gene="dusB"
                     /locus_tag="VKJ77_04590"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HMC44586.1"
                     /translation="MPISTPAIGPHILRNNLFVAPMAGVTDRPFRQLCKRMGAGYAVS
                     EMVASNAQLWKSEKTLRRANHTGEVEPISVQIAGADPKMLAEAARHNVANGAQIIDIN
                     MGCPAKKVCNVAAGSALLQNEALVAQIVQAVVNAVGVGPDAVPVTLKIRTGWNRENKN
                     ALNIARIAQDAGISMLTVHGRTRADLYKGDAEYETIAAVKASVRIPVVANGDIATPEK
                     ARHVLAITGADAIMIGRAAQGRPWLFREIEHFLATGEHLPAPRIDEIQQLMNEHLEDH
                     YDFYGEFTGVRTARKHIGWYTRGLSGANTFRHRMNTLDSTREQLLAVNEFFDAQKALS
                     DRLVYVEELDADGDRGGNDEAEESCDGQNHTDRLAA"
     gene            complement(2450..>2856)
                     /locus_tag="VKJ77_04595"
     CDS             complement(2450..>2856)
                     /locus_tag="VKJ77_04595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HMC44587.1"
                     /translation="RMGRFTRITGRAMFPLGLNALNALVDRCTVAIGNAAQTLHPVAG
                     QGLNLGLRDAHALCDALSTNGPTTVALSLFAQRRALDRRMTIGATDTLARLFTIDFAP
                     LAAMRGLALSALELVPPVKTVLARQMMFGQRR"
BASE COUNT          569 a          824 c          857 g          606 t
ORIGIN      
        1 ctcgtcaggt aattcgtgat cgcgccatcg tattgggctg tgtgcgcaaa cactttggtg
       61 gcgagcttga agttcgtcgc gtagctgacg gtatttttcg ccgagcgcat ttcgtcgagg
      121 acgatcgcgt aatccgaggg atcgacgatc accgttacgt cacgatgatt cttcgccgcc
      181 gaacgcagca tggtcgggcc gccaatatcg atattttcga tcgcgtcttc cagcgagcat
      241 tcttccttcg atacggtctg cacgaacgga tacaggttca ccaccagcag gtcgatggtc
      301 ggaatgttgt gttgttcgag cgccgccatg tgttcaggca aatcgcggcg cgccagaatg
      361 ccgccgtgaa ccttcgggtg cagcgttttc acgcggccgt cgagcatctc cggaaaaccg
      421 gtgtagtcgg cgacttcggt gacagtcaga cctgcttcag ccaggagttt cgcggtgccg
      481 ccggtcgaga gcaggctaac gcccagctcc gacagcgatt tcgcaaattc gacgatgcca
      541 gacttgtcgg aaacggaaag gagcgcttgc ttgatcatga tgggagcggc ggaagccggt
      601 aggggagtcg aggggaatca ggaaattcga gtcgaccgcc gtacgccgcg acggtccgga
      661 ttaaaacaac tgctttaaat cagtccgtgc tgttgcagct tcttgcgcag cgtgttgcgg
      721 ttgatgccga gaaactcggc cgcgagcgac tggttgccct cagcttgctt cagcacaaca
      781 tccatcatcg gcttttcgac gcacgagatc accatctcgt agacgtcgtg cggtttggaa
      841 ccgtccaggt cttggaaata gttgtccagg ctctggcgga cgcattgttc tatgtgatgt
      901 ctactcatgc ggctagtcgg tctgtgtggt tctgcccgtc gcacgattct tcggcttcgt
      961 cgttgccgcc gcggtcgccg tctgcatcga gttcttcgac atagacgaga cggtcggaca
     1021 acgccttttg ggcgtcgaag aactcgttca cggcgagcaa ttgttctcgt gtggaatcca
     1081 gcgtgttcat ccgatgtctg aacgtgttgg cgccggaaag gccgcgagtg taccagccga
     1141 tgtgcttgcg cgctgtacga acgcccgtga attcgccata gaaatcatag tgatcttcga
     1201 gatgctcatt catcagttgc tggatctcgt cgatacgcgg cgccggcaaa tgttcgcccg
     1261 ttgccaggaa gtgttcgatc tcgcgaaaga gccacgggcg cccctgtgcg gcgcggccga
     1321 tcatgatcgc gtccgcaccg gtaatggcca gcacgtgacg cgctttttcg ggcgtggcga
     1381 tgtcgccgtt ggccaccacc ggaatgcgca cggaagcctt aacggcggca atggtctcgt
     1441 attccgcatc gcccttgtag agatcagcgc gggtgcgacc gtgcacggtc agcatggaaa
     1501 tgcccgcgtc ttgcgcaatg cgcgcaatgt tcagcgcgtt tttgttctct cggttccagc
     1561 ccgtgcggat cttcagcgtg acgggcacgg cgtccgggcc aacgccgact gcgttcacca
     1621 cggcttgcac gatctgcgcg accagcgctt cgttttggag caatgccgat ccagccgcca
     1681 cattgcaaac tttcttggct gggcagccca tgttgatgtc gatgatctgc gcgccgttcg
     1741 cgacgttgtg acgcgcggct tcggcgagca ttttcggatc agcgccggcg atttgcaccg
     1801 aaataggctc cacttcgccg gtgtgattcg cgcgacggag cgttttctcg cttttccaca
     1861 attgcgcatt cgacgcaacc atttcggaca ccgcgtaacc cgcgcccatg cgtttgcaca
     1921 actgccggaa cgggcggtcc gtcaccccgg ccatgggggc gacaaacaag ttgttacgca
     1981 aaatgtgggg gccgatggcc ggggtggaaa tgggcatgaa actcgcagcg gtcccaaata
     2041 aagggacgca aaagcgctta aggaaacgcg tattttaacg cgaacgcgct gagtcaatta
     2101 agtccaatcg acgcgcaagt tgttaaatct tctatgaatg tcgggaacgt catagaggaa
     2161 aagctcgatt atgggcagat gaatgcagtg cggcgaacgc atgtttgact cgatcggagc
     2221 ggcggcccga gggcgaggtc gtcgctcgtc gcgatcggag cacgctgacc ttccgcaaag
     2281 cgcgcagaag gctcatcgca tgaatcgcac gaatcgcacg aatcgcacga atcgctagag
     2341 cgtgccgtgc ccgaaggtgt tcccagcgtg atcagctcag gagaattcac tcacagcaat
     2401 cacgccgctc gctgtattga ctcgaagccg ctgcaagtat cccgcccagt caacgccgtt
     2461 gcccgaacat catctgtcgc gccaacacgg ttttaaccgg cgggacgagt tccaacgcgc
     2521 tcaacgccaa tccgcgcatc gcggcgagtg gcgcgaaatc gatggtgaaa agacgtgcaa
     2581 gcgtatcggt tgcgccaatc gtcatgcgcc ggtccaatgc gcgccgttgc gcaaaaagac
     2641 tcaacgcaac cgtagtcggg ccgttcgtcg ataacgcgtc gcacagcgcg tgagcatcgc
     2701 gtaagcccag attgagccct tgccccgcaa cgggatgcag cgtttgtgca gcgttgccga
     2761 tagcgaccgt gcaccggtcc accagagcat tcagcgcatt caatccgagc gggaacattg
     2821 cccgcccggt gattcgcgtg aagcgaccca tgcgct
//
LOCUS       DATGBK010000312         2648 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_188973, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000312 DATGBK010000000
VERSION     DATGBK010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2648
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188973"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1648
                     /locus_tag="VKJ77_04600"
     CDS             <1..1648
                     /locus_tag="VKJ77_04600"
                     /inference="COORDINATES: protein motif:HMM:NF019843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC44588.1"
                     /translation="SFNLALMAYTGLGIPKDRALAFRFARTGAERGHAQSAVMVGRML
                     FAGDGVAIDKAQALTWYRKAADAGNVEGQRAAGWQTMYGNGVPRDEALGEQYLKRAAS
                     AGDARAQTMLGLYLLKRPTSADRDTGKEWLVKAVAQKYGPAYSAMGDFYAKKVGTTPD
                     QATAVKWFTRGAELNDLASQRVLCLAYANGSGVAQNAEEAQRWCSAAAHAGDTLAMRL
                     LAVGIVQGSNEAARDRVYWQWRLASTSDPVYESILGDSYDRGRGVTVDFSAAVYWLRR
                     SAGQGNASAQDSLARHLFTGLGTQQDNHEAFMWASRAAAVSSDAMELQGKAYLSGRGV
                     AQDVIAARNWFEKAAAAGSGEAASELANVYETGTGVPHDEALALSWYRKAAALGSDTA
                     SIALALRAQAAGDTSSLDERSAYWLAIPIPIDAVTPGISSRQRTSAAREEGDAAWDAL
                     SSLNEALLGSPLQQYETGMRYLLGDGVTRDKALGDAWLRRAQTSFAVTPGLRVYADAA
                     RVVEERVGAGLTADEQERAHRLAANLLATVPVSTASMASN"
     gene            complement(1708..2088)
                     /locus_tag="VKJ77_04605"
     CDS             complement(1708..2088)
                     /locus_tag="VKJ77_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC44589.1"
                     /translation="MNLPPAETQPVIEGLSAITLSTRDMRSAVRFYQALGFPLLHGGE
                     NEPFTSFAAGATFVNLTVEMHGPINWWGRVIIYVSDVDAMYRKAIAAGITPAFTPRDA
                     PWNERYFHVKDPDGHELSFARPLS"
     gene            complement(2120..2446)
                     /locus_tag="VKJ77_04610"
     CDS             complement(2120..2446)
                     /locus_tag="VKJ77_04610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44590.1"
                     /translation="MPDQATPWRVFEYEGFDIHVLSQLKLESMPAHVAPQGSGRYVYI
                     GFICRHGAHAEAPGEAVQFHADGNDEFKSADDAVQEARHIGRSIIDGTHPDISILPLV
                     SHHHPG"
BASE COUNT          498 a          759 c          878 g          513 t
ORIGIN      
        1 gtcgttcaat cttgcactaa tggcttacac cgggctcggc atcccgaagg accgtgcgct
       61 tgctttccgg ttcgctcgga ccggcgcaga gcgtggtcac gcgcagtccg cggtgatggt
      121 cggccggatg ttattcgccg gcgatggtgt agcgatcgat aaagcgcagg cgctaacctg
      181 gtatcgcaag gcggcggatg ccggcaacgt cgaagggcag cgcgcggcgg gctggcagac
      241 catgtacggt aacggcgtac cgcgcgacga agcgctcggc gagcaatatc tcaagcgggc
      301 tgcaagcgca ggtgatgcgc gggcgcagac gatgctcggg ttgtatctgc tcaagcgtcc
      361 gacgtctgcc gacagggata ccgggaagga atggctcgtt aaggccgtcg cccagaagta
      421 cggtccagcc tattccgcga tgggcgactt ttacgccaaa aaggtgggca cgacgcccga
      481 tcaggcgaca gcagtcaaat ggtttacgcg cggcgcggaa ttgaatgacc tggcgtcgca
      541 gcgcgtgctg tgcctcgctt acgcgaacgg ctcgggcgtt gcacagaacg cagaagaggc
      601 gcagcgctgg tgctcggcag ccgcgcacgc gggcgacacg ctcgcgatgc gtctgttggc
      661 ggtcggcatc gtgcagggca gcaacgaggc agcccgcgat cgcgtgtact ggcagtggcg
      721 cctcgcgagt acgagtgatc cggtctatga gtcgatcctc ggcgactcgt acgaccgggg
      781 ccgcggcgta acggtcgact tcagcgcggc cgtgtactgg ctccgccgtt cggcggggca
      841 gggaaacgcc tcggcgcaag actcgctcgc gaggcatctg ttcacagggc tcggtaccca
      901 acaagacaat cacgaagcgt tcatgtgggc aagccgggcg gcggccgtca gttccgatgc
      961 gatggagttg cagggcaagg cctatctgtc tggacgcggc gtcgcacagg acgttattgc
     1021 tgcacgtaac tggttcgaga aggcagcggc ggccggctcg ggcgaggcag ccagcgagct
     1081 cgcgaatgtg tacgagacag gcaccggtgt accgcacgac gaggcgctcg cgctaagctg
     1141 gtatcgcaag gccgctgcgc tgggatccga cacagcatca atcgcgctgg cgttgcgtgc
     1201 gcaggccgcg ggagatacct cgtcgctcga cgagcgctcg gcgtactggc tcgccatccc
     1261 catccccatc gatgcggtga cgccggggat cagtagcagg cagcgaacgt ctgccgcgag
     1321 agaagaaggc gacgcagcgt gggatgcact gtcgtccctg aacgaagcat tgcttggtag
     1381 tcccttgcag cagtacgaaa ctggtatgcg ctatctgttg ggcgatggcg tgacgcgtga
     1441 caaagcgctg ggcgacgcgt ggcttcggcg cgcgcaaacc agctttgcgg tcacacctgg
     1501 cttgcgtgtg tatgcagatg cggctcgggt tgtcgaggaa cgtgttggtg cagggctgac
     1561 tgcggacgaa caagagcgtg ctcatcggtt agcagcaaat ttgctggcga ctgttccagt
     1621 tagcacagcc tcgatggcgt ctaactgaaa tgcgcctggc gctgaagtgc cagacctttt
     1681 ctcccatgtt gtcgcccgat cgcgcgctca gctcagtggc cgcgcgaagc tgagttcgtg
     1741 cccgtcaggg tccttgacat ggaaatagcg ttcgttccaa ggcgcgtcgc gcggtgtgaa
     1801 cgccggcgtg atcccggctg caatggcctt gcgatacatc gcatcgacgt ctgacacata
     1861 gatgatcacc cggccccacc agttgattgg accgtgcatc tccacggtca ggttgacaaa
     1921 cgtcgcaccc gccgcgaatg aagtaaacgg ttcgttttcg ccgccgtgca atagcgggaa
     1981 accgagcgcc tggtaaaaac gcacggcgct tcgcatgtcg cgagtggaca acgtgatcgc
     2041 gcttaagcct tcgatcaccg gctgggtttc agcggggggc aagttcatcg actggtgtcc
     2101 tctataacca ttgccgttgt tagcctggat gatgatggga gacgagcggt aagatggata
     2161 tgtccggatg cgtgccgtcg ataatgcttc gcccgatgtg tcgcgcttcc tgcacggcgt
     2221 cgtccgcgct cttgaattcg tcgttaccgt cggcgtggaa ttggaccgct tcgcccggcg
     2281 cttcggcatg cgcgccgtga cgacagataa agccgatgta gacataacgg ccgcttccct
     2341 gcggcgccac gtgtgcaggc atcgactcca acttcagctg ggacaagacg tggatgtcga
     2401 agccttcgta ttcaaagacg cgccatggag tagcttgatc gggcatagcg tcgtccctca
     2461 tatttatttg cttccgttat caaacgttac tccttgtttc gctttgaatc cacccggggt
     2521 ttagccgtgc gtggcaaaag ggttgcgctg catttgcaac atcgagtggc ccgcgtataa
     2581 aggccaagaa aggccgttca ggcatgccgc gcggatatag ccgaggtttc cctttaagcg
     2641 atcgggac
//
LOCUS       DATGBK010000313         9083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_3512, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000313 DATGBK010000000
VERSION     DATGBK010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 9083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9083
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3512"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VKJ77_04615"
     CDS             <1..406
                     /locus_tag="VKJ77_04615"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HMC44591.1"
                     /translation="PFGQRSAGGVRPLIAGMAAMKNDGERISIGVMIETVAGVEQVEA
                     IAAVEGLGYLFIGTGDLSLSRGDVASGVIEQDCARILKAARANNLPCGIYTGSTQDAL
                     AARALGFDFVVAASDIEVVRAGFDQAVSALKD"
     gene            414..1850
                     /locus_tag="VKJ77_04620"
     CDS             414..1850
                     /locus_tag="VKJ77_04620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC44592.1"
                     /translation="MTSSSRSFVERLVAELGADVVTSGADLGTRRVRDWSGTPGAEPI
                     ALIRPRSTQEVSRALAFCHANQQAVVTQGGLTGLAGGANLFGGEVALSLERMNAIEEV
                     DTVSGTITVQAGAVLQRVQEAADAAGMMFPLDLGARGSCTIGGNLATNAGGNRVIKYG
                     MARDHVLGLEAVLADGTVVSDLHKMIKNNSGYDLKNLLIGSEGTLGVITRAVMRLAPK
                     PLGVSTAWCGLPDFAAVTRLLRHARTRMSGGVSAFEVMWPSYYDYVLENVKTVRAPLD
                     TEHAFYVLLESMGSDAERQAEEFETMLGEMLDAGVIENASLASSAADATRFWAVRDAP
                     AEFPILLPGLIGFDISFAIADIGQVAAQCEAMLHARWPDMRTLVYGHLGDGNLHVIAH
                     LKNAPPDLEEHVDAAVYEITREWHGAVSAEHGIGGKKRAYLGYTRDTGAIGAMRAIKR
                     ALDPLNLLNPGKVFVDTAPGKSSPLGAL"
     gene            1850..2869
                     /locus_tag="VKJ77_04625"
     CDS             1850..2869
                     /locus_tag="VKJ77_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44593.1"
                     /translation="MLRLISTVLSRRLIAAIPTLLMLSLIVFVVLRLIPADPLAMMLP
                     PNATPADAALLRHQLGLDKPIPSQFLIWLVNALHGNLGASISFQQPVAMLISSTLPAT
                     LELCLSALVISLIISVPGGVFAYAVTDRRGELPVSFGVVLMQSVPSFLWALLLIALLG
                     VYLPVLPFSGRVGDGIPMPHLTGFLLIDFLVKGEFGDWLSAASHLVLPSLALAFGFAP
                     LVIRVLRSSLLDQRNESYVGVARLRGVSESRILWRHMLKNAALPALTMIGVQFGFLFG
                     GALLVEMIFSFPGVGNLMVQAVRNNDLVLIQGIAIVFCALMLVINAIVDTLYVIMNPR
                     LRKTA"
     gene            2891..3859
                     /locus_tag="VKJ77_04630"
     CDS             2891..3859
                     /locus_tag="VKJ77_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003799258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44594.1"
                     /translation="MSTTPLSPKHDMKADMLHESTSVDPSPEAAAPVAVVVGKSARAR
                     RKPAVNLWLGGAIVLGVLFCAVFAPWLAPHNPLDQDLLHMLSPPAWMAGGDVAFPLGT
                     DSLGRDVLSRLLYGSRIALTVAVIAAFGAGIVGSVLAILAGYFGGWVDRSISYLVDLW
                     MSFPPVVLSLVLMVSLGVGIENVILSIVLVDWTRFCRVVRSEVMVVRQRDYVLAAQLL
                     NFTHLRIMLREILPAALPLMITLFSLEMGVAITVEALLSFIGLSVPANVTAWGVMIAD
                     ARVTMHDSLSGLLFPVLAIVITVLGCNLLGDGLRVALDPRMRSKGE"
     gene            3862..5748
                     /locus_tag="VKJ77_04635"
     CDS             3862..5748
                     /locus_tag="VKJ77_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017524417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44595.1"
                     /translation="MATPITTTTTEAVLQLDGVTLTAKLGGVPVAALRDLTLSIGRGR
                     VLGVVGESGAGKSMLARLISGLLPGGFTVTSGSMHFAGQDMLAMSASKRRALLGRKIA
                     FIPQEPLTALNPLWTIADTFNEHLARVGVPSNERWETARKALESVQLPVPADMLKRYP
                     HQLSGGQCQRVLIAMAFASNPALLIADEPTTALDVVTQTRVMRMLAEQQRVHSTAVLL
                     ITHDLRLAAHVCHDVAVMYAGDLVEYGPARDVLDEPRHPYTRALKYATPDLTGPRRRL
                     PVLAQQMPGLSALAGIAGCRFAPRCPSAGAACAAVLQNRVAPNGHRVACSEACEHAPL
                     VDNSLAPLLPPAPVMGAQPVAELREASLTYTSRSGVFGQRKTSFHAVKPLSLQIFPGE
                     FVGIVGESGSGKTSVARLLMGIEQPTDGRVMIGGEDLTHGSAERVRRAREQVQIIFQD
                     PQSALNPRRSVERLLTQALEAAGVASLDAKQRLARAQSVQRDVGLPADTLTRFPSQLS
                     GGQKQRVNIGRALCASPQLIVADEIVSGLDVSVQAQILNLLLELRRERQIALLLISHD
                     LSVVRYLCSRVLVMRRGEVVEQGLTEEVFAAPRHPYTRALIDAVPSDHAGTPWPPAEL
                     EEAA"
     gene            5879..6571
                     /locus_tag="VKJ77_04640"
     CDS             5879..6571
                     /locus_tag="VKJ77_04640"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC44596.1"
                     /translation="MATADPTVIKQPRRTALRPATLMESVYQEVLGRLQRGQIGPDDR
                     VLDYEIAEEFECTRMPVRQALLRLVNEGYLVGTTRGFITPALTAEDVREIFEVRRMLE
                     PGAAAAAAAVLTDEQLAGMGAAYRKCRRAFERKDIGLMTEANVEFRAIWLEGVLNTRL
                     KGTILRFADHTRQVRHGTMTKPGTMKLIVDGMQVLLKGFVDRDAMTVRSATQGFIDDA
                     EQQYFLGSDDAL"
     gene            6584..7750
                     /locus_tag="VKJ77_04645"
     CDS             6584..7750
                     /locus_tag="VKJ77_04645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006490253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HMC44597.1"
                     /translation="MNDFAGVSIVAAVEVPYTRHAPAGTSTAGLLAQALKAALSQAEL
                     STNEVDGLGVASFTLQPDHAIDFAWRAGLRVGWCMDDCHGGASGINLLQHAARAIQAG
                     DASVIVLVSGDHFEAADFTSLVENYNVTTRTHLRPLNTGGPNPLFAMLTQRQMRASQL
                     TREDYAALCMAQREWASMNPLAVYREPLTLETYLAAPLVAVPLCRFDCVPVVSGANAI
                     VLTSSTHRCAERSPVRIRALRASYNVDHQHGDGLVTGLAGISDALWRDANLRPADMNL
                     VSVYDDYPSMILTQLNDLGFADDQPDLRTFIHERIASRRLPVNTSGGQLSAGQAGAAA
                     GMHGLVEAITQLRHEAGARQVDDARFAAVSGYGMVQYRYGMCANAVVLERGVAQ"
     gene            7747..8043
                     /locus_tag="VKJ77_04650"
     CDS             7747..8043
                     /locus_tag="VKJ77_04650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44598.1"
                     /translation="MKVFACVACAQVDFPRRLLCPSCGCDEFVEVDACKGSVEDVTTL
                     HHRAGRAGGDIAYIATVLTHAGPRVIVRLERLLAPGAVVSLRLESDGAIVGFSD"
     gene            complement(8040..>9083)
                     /locus_tag="VKJ77_04655"
     CDS             complement(8040..>9083)
                     /locus_tag="VKJ77_04655"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC44599.1"
                     /translation="EIYITEGGLCEVRPGVERLITPLPLFHMNALACSTMAMVLSAGC
                     VIQLDRFHPRSWWADVAQSGATIVHYLGVMPAILLSMDVDKPVEHSVRFGYGANVDPK
                     HQQVFEQRFGFPLIEGWAMTETGGAVVIASSREPRRAGTRCFGRPRSGMEVKLVDAEY
                     NEVADGVPGHMLVRREGLNPRIGFFRGYLKDNAATEAAWQHDWFHTGDIVRRGDEGSL
                     HFVDRQKNIIRRSGENIAALEVEACLLDHPDVRQTAVIAAPDSLRDEEVMACVIVSPG
                     TVRDEATALTLQAWCLERLAYYKAPGYVAFVDALPVTSTNKVQKTQLAAFGADPLNAP
                     ECFDLRAFKKRVS"
BASE COUNT         1550 a         2715 c         2948 g         1870 t
ORIGIN      
        1 gcctttcgga cagcgctcgg cgggtggcgt caggccgctg attgccggca tggccgcgat
       61 gaaaaacgat ggcgagcgga tatcgattgg cgtgatgatc gagacggttg cgggcgtgga
      121 gcaagtcgaa gcgattgctg ccgtggaagg attgggctat ctgtttatcg gcaccggtga
      181 cttgtctttg tcgcggggcg atgtcgcgtc gggagtgatc gagcaggact gcgcgcgcat
      241 tttgaaagcc gcccgcgcga acaatcttcc gtgtggcatt tacaccggtt cgacgcagga
      301 cgcgctggcc gctcgcgcgc tcggattcga tttcgtcgtg gccgcaagcg atattgaagt
      361 ggtgcgagct ggtttcgatc aagccgtttc cgcgctcaaa gattgagccg atcatgacgt
      421 catcttcgcg cagcttcgtc gaacgattgg tggccgagtt gggcgccgac gtggtgacgt
      481 ccggcgccga tctcggcaca cggcgggtgc gggactggag tggaacgccg ggcgccgaac
      541 ccatcgcgtt gatccggccg cgttcgacgc aagaggtatc gcgggcgctc gctttttgtc
      601 acgccaacca gcaggcggtc gtcacgcaag gcgggttgac cggcctcgcg ggcggcgcca
      661 acttgttcgg cggcgaagtg gcgctgagcc tggaacggat gaacgcgatc gaagaagtcg
      721 ataccgtctc cggcacgatc accgtgcagg cgggcgcggt gctgcaacgc gtgcaggaag
      781 cagccgatgc cgccggcatg atgtttcctc tcgatctcgg cgcgcgcggc agttgcacga
      841 tcggcggcaa cctggcgacc aacgctggcg gcaatcgcgt catcaaatac ggcatggcgc
      901 gcgaccatgt gctgggtctg gaagcagtgc tcgcagacgg caccgtggtc agcgatctcc
      961 acaagatgat caagaacaac agcggttatg acctgaagaa cctgttgatc ggcagcgaag
     1021 gcacgctagg ggttatcacg cgcgcggtca tgcggcttgc gccgaagccg ttgggggtat
     1081 cgacggcatg gtgcggactg cctgacttcg cagccgtcac gcgtttgctg cggcatgccc
     1141 gcacgcggat gtcgggcggc gtctcggcgt tcgaagtgat gtggccgagc tattacgact
     1201 acgtgctcga gaacgtgaag accgtgcgcg cgccgctcga caccgagcat gcgttctacg
     1261 tgctgcttga aagcatgggt tccgatgccg aaagacaagc cgaagagttc gagaccatgc
     1321 ttggcgagat gctcgatgcc ggcgtgatcg agaacgcatc gcttgccagt tccgccgccg
     1381 atgccacccg cttttgggcc gttcgagacg cgcccgccga attccccatt ctcctgccgg
     1441 gtcttatcgg cttcgacatc agctttgcga ttgccgatat cggccaggtt gccgcgcaat
     1501 gcgaagctat gctgcatgcg cgctggcccg atatgcgcac gctggtgtac ggccatctcg
     1561 gcgatggcaa cctgcacgtc atcgcgcatc tgaagaatgc accgccggat ctcgaagaac
     1621 acgtcgatgc cgcggtctat gaaatcacac gcgaatggca tggcgcagtc tcagcggaac
     1681 atgggattgg cggcaagaag cgcgcgtatc tgggctacac ccgtgacacc ggtgcgatcg
     1741 gcgcaatgcg cgcgatcaag cgcgctctcg atcctttaaa cctgctcaac cccggcaagg
     1801 tgttcgttga cacggcgccc ggcaagtcga gcccccttgg agcgctgtga tgctacggct
     1861 gatctctacc gttctttcgc gccggctcat tgccgcgatc cccacgctgc tgatgctctc
     1921 gctgatcgtg ttcgtcgtgc tgcgcctcat ccccgccgac ccactcgcga tgatgctgcc
     1981 gcccaacgcc acgcccgccg atgccgctct gttacgccat cagctcggcc tcgataagcc
     2041 gatccctagc cagttcctga tctggctagt gaatgcgctg cacggcaacc tgggggcatc
     2101 gatttcattc cagcaaccgg tcgccatgct gatcagctcg accttgcccg cgacgcttga
     2161 actctgtctc tcggcactcg tcatctcgct gatcatcagc gtgccgggcg gcgtgtttgc
     2221 ttacgccgtc accgatcgcc gcggcgagtt gccggtcagc ttcggcgtcg tgctgatgca
     2281 gtccgtgccg tcgttcttgt gggcgttgtt gctgatcgcg ctgctcggcg tgtatctgcc
     2341 cgtgctgccg ttttccggcc gcgtaggcga cggcattccc atgccgcacc tcaccggctt
     2401 cctgctgatc gacttcctgg tcaagggcga attcggcgac tggctgagtg cggcgagtca
     2461 tctcgtgctg ccctcgcttg cgctggcttt tggctttgcg ccgctcgtga tccgcgtgct
     2521 gcgctcgagc ctgctcgatc agcgcaatga gtcgtatgtg ggcgtggcgc ggttgcgcgg
     2581 ggtatcggag agccggatct tgtggcgtca catgttgaag aacgcggcgt tgcccgcgtt
     2641 gaccatgatc ggcgtgcagt tcggtttcct gttcggcggc gcgttgctcg tcgagatgat
     2701 cttctcgttt cccggcgtcg gcaatttgat ggtccaagcg gtgcgcaaca acgacctggt
     2761 gttgatccag ggcatcgcga tcgtgttctg cgcgctgatg ctggtgatca acgcgattgt
     2821 cgacacgctg tacgtgatca tgaatccgcg cctgcgcaaa acagcttgaa acgtacaaac
     2881 gagtcacgac atgtccacga ccccgttgag tccgaagcac gatatgaagg ctgacatgct
     2941 gcacgaatcc acttcagtcg acccatcgcc ggaagccgcc gcgccagttg cggtggttgt
     3001 cggaaaatcg gctcgcgcgc gccgcaagcc ggccgtcaat ctgtggcttg gcggcgcgat
     3061 cgtgttgggc gtgctcttct gtgccgtgtt cgcaccgtgg ctcgcgccac ataatccgct
     3121 cgatcaggat ctgctgcaca tgttgtcgcc gcccgcatgg atggccggcg gtgacgtagc
     3181 gtttccgctc ggtacggaca gcctcggccg tgacgtgtta tcgcgcttgt tatatggcag
     3241 ccgtatcgcg ctgacggtcg cggtgattgc agcgtttggc gcaggtattg tcggcagcgt
     3301 gctggcgatt ctcgccggct atttcggtgg ctgggtcgat cgcagcatca gttatctggt
     3361 ggacctgtgg atgtcgtttc cgccggtcgt attgtcgctg gtgctgatgg tgagtctcgg
     3421 cgtcggtata gagaacgtga tcctgtcgat cgtgctggtg gactggacgc gcttttgccg
     3481 cgtcgtccgc tccgaggtga tggtcgtgcg tcagcgcgac tatgtactcg ccgcgcaact
     3541 gctcaacttc acgcatctgc gaatcatgct gcgcgaaata ttgcctgctg cgctgccgtt
     3601 gatgatcacg ctgttctcgc tcgaaatggg cgttgcgatc acggtggagg cgttgctgag
     3661 tttcattggc ttgagcgtgc cggccaatgt gaccgcgtgg ggcgtgatga tcgcggatgc
     3721 acgcgtgacc atgcatgact cgttgtccgg actgttgttc ccggtgctcg cgatcgtgat
     3781 cacggtgctt ggctgcaacc ttcttggcga tggcctgcgc gtcgcgctcg atccccgcat
     3841 gcgcagcaag ggagaatgac gatggcgaca ccaatcacaa cgacaaccac cgaagccgtg
     3901 ctgcaactgg atggcgtgac gctgacagcg aagctgggcg gtgtgccggt cgcggcgctg
     3961 cgggatttga ccttatcgat agggcggggt cgcgtgctgg gcgtggtcgg tgaatcgggt
     4021 gcgggtaaaa gcatgctggc acgcttgatc tcgggattgc tgccgggcgg tttcacggtg
     4081 acgagcggca gcatgcactt cgccggacag gacatgcttg ccatgtcagc gagcaaacgc
     4141 cgcgcacttc tcggccggaa aatcgcgttc atcccgcagg aaccgctgac cgcattgaac
     4201 ccgctatgga ccatcgcaga taccttcaat gaacatctcg cgcgcgtggg cgtgccatcg
     4261 aatgaacgct gggagaccgc gcgcaaggcg cttgaatcgg tgcaactgcc ggtacccgcc
     4321 gacatgctca agcgttatcc gcatcagctt tcgggcgggc aatgccagcg cgtgctgatt
     4381 gcgatggctt tcgcgagcaa tccggcgctg ctgattgctg acgagcccac gaccgcgctc
     4441 gatgtcgtca cgcaaacccg cgtgatgcgc atgctcgcgg aacagcagcg cgtgcattcg
     4501 actgccgtat tgctcatcac gcacgatctg cggctggcgg cccacgtttg ccatgacgtc
     4561 gccgtgatgt atgccggcga tctggtcgaa tacggtccgg cccgcgatgt cctcgatgaa
     4621 ccgcgtcacc cgtacacgcg cgcgttgaaa tacgcgacgc ctgatctcac cggaccacgg
     4681 cgccgcttgc cggtactcgc acagcaaatg ccgggcttgt ccgcgctggc cggcatcgcc
     4741 gggtgtcgtt tcgcaccgcg ttgccccagc gcaggcgccg cgtgcgcggc tgtgttgcag
     4801 aatcgcgtgg cgcccaacgg gcatcgggtc gcgtgcagcg aggcatgcga gcatgcaccg
     4861 ctcgtcgaca attcgctggc gccgctgttg ccgcctgcgc ccgtcatggg cgcgcaacca
     4921 gtcgcggaac tgcgcgaggc atcgctgacg tacacgagcc gcagcggggt gttcggccag
     4981 cgcaagactt ctttccacgc cgtgaagccg ctgtcgctac agattttccc cggggagttc
     5041 gtggggatcg tgggggaaag cggcagtggc aagacatcgg tggcgcggtt gttgatgggt
     5101 atcgaacagc cgaccgacgg ccgggtgatg attggcggcg aagatttgac gcatggcagc
     5161 gcggagcgcg tgcggcgtgc ccgcgagcag gttcagataa tcttccagga cccgcagtcc
     5221 gcgctgaacc cgcgccgctc ggtcgagcgc ctcctgacgc aggcgctgga agcggccggc
     5281 gtggcgtcgc tggatgcgaa gcagcggctg gcgcgcgcgc agtcggttca acgcgacgtg
     5341 ggtcttcccg ccgataccct cacgcgcttt ccctcgcagt tgtcgggcgg tcagaagcag
     5401 cgcgtgaata taggcagggc gctgtgtgca tcgccacaat tgattgtcgc cgatgaaatc
     5461 gtgtcgggcc tcgatgtatc cgtccaggcg cagatcctga atttgttgct ggagttgcgt
     5521 cgcgagcggc agattgcgct gctgctcatt tcgcacgatt tgtccgtggt ccgctacttg
     5581 tgcagccgcg tgctcgtgat gcgtcgcggc gaagtagtgg agcaggggct gaccgaggaa
     5641 gtgttcgcgg cgccgcgcca tccgtacacg cgcgcactga tcgacgcggt gccgagcgat
     5701 catgcgggaa cgccatggcc gcctgcggag ctggaggagg cggcgtgaga atcatgcgtg
     5761 gcgtgctttg agaggcttgc cggaagctag ccagtacaat tattagttga gtgacattgc
     5821 cgccttcgcg gcggcgtgcg aagcgtgtaa atcgcgagac cagacaatgg agaacaccat
     5881 ggcaaccgcc gacccgacgg ttatcaagca gccgcgacgt accgcgctgc gcccggcgac
     5941 attgatggag tcggtgtatc aggaagtgct gggccgcctt cagcgcggcc agattggccc
     6001 cgatgaccgc gtgctcgatt acgagattgc ggaagaattc gagtgcacgc gcatgccggt
     6061 tcgccaggcg ttgctgcgcc ttgtgaatga gggctatctg gtcggcacca cgcgcggttt
     6121 catcacgcct gcgctgaccg ctgaagatgt gcgcgagatc ttcgaagtgc gccgcatgct
     6181 cgaaccgggc gcggcggcag cggccgcagc tgtcctcacc gatgaacaac tcgccggcat
     6241 gggggcggct tatcgcaaat gccgccgtgc gttcgagcgc aaggacatcg gcttgatgac
     6301 cgaggccaat gtcgagttcc gcgcgatctg gctggaaggc gtgttgaata cgcggctgaa
     6361 aggcacgatc ctgcgtttcg ccgatcacac gcgccaggtg cgtcatggaa ccatgacgaa
     6421 gccgggcacg atgaagctga ttgtcgatgg catgcaggtg ttgctgaaag gcttcgtgga
     6481 tcgcgatgcc atgacggtgc gctcggcgac ccagggtttt atcgatgacg ccgagcagca
     6541 gtattttctc ggtagcgacg atgcgctctg acgcgtccac gcaatgaacg acttcgcagg
     6601 cgtgtcgatc gtggccgcgg tcgaagtgcc gtacacgcgt cacgcgccag ccggcacgag
     6661 tacggcgggt ttgctcgctc aggccttgaa ggccgcgctt tcgcaggctg aattgtcgac
     6721 gaatgaagtc gatggtctcg gcgttgcatc gttcaccttg cagccggatc acgctatcga
     6781 cttcgcgtgg cgcgctggtt tgcgtgtggg ctggtgcatg gatgactgtc acggcggcgc
     6841 gagtgggatc aacctgttgc agcatgccgc gcgtgccatt caggccggcg acgcgagcgt
     6901 gattgtcctg gtcagcgggg accatttcga ggcggcggat ttcacgtcgc tcgtcgagaa
     6961 ttacaacgtg actacgcgaa cgcatcttcg gccattgaac acgggcggac caaaccccct
     7021 gttcgcgatg ctcacgcaac gccagatgcg cgcctcgcag ttgacgcgcg aggattacgc
     7081 cgcgctgtgc atggcgcaac gcgagtgggc gtcaatgaat ccgctggcgg tctaccgtga
     7141 gcccttgacg ctcgaaacct atcttgccgc gccgctcgtg gctgttccgt tatgtcgctt
     7201 cgattgcgtg ccggtggtgt cgggggcgaa tgcgattgtg ctgacctcgt cgacccatcg
     7261 ttgtgccgag cgttcaccgg ttcgcattcg cgcgctgcgt gcatcgtata acgtcgatca
     7321 tcaacatggc gacgggcttg tcacgggtct tgcaggcatt agcgatgcac tctggcgcga
     7381 cgcgaacctt cggcctgccg atatgaacct cgtctcggtc tatgacgact atccgtcgat
     7441 gatcctcacg caactcaatg atctcgggtt cgccgatgac cagcctgact tgcgcacgtt
     7501 tatccacgag cgcattgcgt cacgccgctt gcctgtgaat acgtcgggcg ggcaattgtc
     7561 ggcgggacaa gcgggtgcgg cggcgggcat gcatgggctt gtcgaagcga tcactcagtt
     7621 gcgtcatgag gcaggtgcgc gccaggtgga cgacgcgcgt ttcgcggcgg tgagtggtta
     7681 cggcatggtg cagtatcgat acggcatgtg tgcgaatgcc gtggtgctcg aacggggagt
     7741 tgcgcaatga aggtcttcgc ttgcgtagcg tgcgctcaag tcgatttccc ccgtcgcttg
     7801 ctgtgtccgt cgtgcgggtg cgatgaattc gtcgaggtgg atgcttgcaa aggtagcgtg
     7861 gaggacgtca ccacgttgca tcatcgggcg gggagggcgg gtggggatat cgcttacatt
     7921 gcgaccgtcc tgactcacgc cgggccgcgc gtcattgtgc gacttgagcg cttgcttgca
     7981 ccgggcgccg tcgtttctct tcgtctcgaa agcgacggcg ccattgttgg tttcagcgac
     8041 tagctcaccc gcttcttgaa cgcccgcaag tcaaaacatt ccggcgcgtt caacgggtct
     8101 gcgccgaacg cggcaagctg agtcttctgg actttattcg tcgatgtcac cggcaacgca
     8161 tccacgaacg caacatagcc tggtgccttg taatacgcga gtcgttccag gcaccacgcc
     8221 tgcaacgtga gtgcggtggc ttcatcgcgc accgttcccg gcgacacgat cacacaggcc
     8281 atcacttcct catcgcgcag agaatcgggc gcggcaatca ctgcggtctg acgcacatcg
     8341 ggatgatcga gcagacacgc ttcaacctcc agcgccgcaa tattttctcc cgatcgacga
     8401 atgatgtttt tctgtctgtc gacgaaatga agactgcctt cgtcaccgcg acgcacgata
     8461 tctccggtat ggaaccagtc gtgttgccat gcagcttctg ttgcagcatt gtctttcaga
     8521 tagccgcgaa aaaagccgat gcgcggattg agtccctccc gccgcaccag catgtggccc
     8581 ggcacaccgt ccgcgacctc gttgtactcg gcatcgacaa gtttcacttc catgcccgaa
     8641 cgcggccggc cgaaacatcg cgtgcctgcg cgacgcggtt cgcgactcga tgcaatcacg
     8701 acagcgccgc cggtctcggt catggcccac ccttctatga gtggaaagcc gaagcgctgc
     8761 tcgaacacct gctgatgttt cggatcgacg ttcgcaccgt agccgaatcg aaccgaatgc
     8821 tcgacgggtt tatcgacgtc catgcttagc aaaatcgcgg gcatgacgcc gagatagtgg
     8881 acgatcgtcg cgccgctttg cgccacatcc gcccaccagc ttcgcggatg aaaccggtcg
     8941 agctggatca cgcagccggc ggacaacacc atggccatgg tggagcaggc gagcgcattc
     9001 atgtggaata gcggcaacgg agtgatcagt cgttcgacac ccggacggac ttcgcacaag
     9061 ccaccttccg tgatgtaaat ctc
//
LOCUS       DATGBK010000314         2985 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_73164, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000314 DATGBK010000000
VERSION     DATGBK010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2985
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73164"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1235
                     /gene="hemDX"
                     /locus_tag="VKJ77_04660"
     CDS             <1..1235
                     /gene="hemDX"
                     /locus_tag="VKJ77_04660"
                     /EC_number="2.1.1.107"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="fused uroporphyrinogen-III synthase
                     HemD/membrane protein HemX"
                     /protein_id="HMC44600.1"
                     /translation="SQSSQTNQESAPTDSRPASTPAHQPAQSRMTDSIDSSKTAPQSA
                     TSTPSSSSNPPNPPNTPFTPYESQPKQRGGGAGTALLWLVLLIVVVVAGVGGFMLNRK
                     FDQRDAQLAQRLQASDTQTAALSAQADQAASSVSAINTQIIQFQGKLTDAQAQSQALQ
                     QQYQDLASNRDDWTLAEVEQILSSASQQLQLTGNVQLALFALQSADTRLAATTGPQIV
                     TIRKAIAQDMDKLRATPSTDLTGLAIKLDTAIDQIDSLPLAGEAPITPPTAHADAPRD
                     TASIAAATGQPVWKVWLQQIASGIGQQLSSLVTVRRIDNADAMLASPDQGYFVRENVK
                     LRLLSARLSLLSRSEPALKSDLHAADTALGRYFDQSSGKVKAVRTLLQQVDQASLAVT
                     VPDLNASLAAVHQFKRGG"
     gene            1235..2428
                     /locus_tag="VKJ77_04665"
     CDS             1235..2428
                     /locus_tag="VKJ77_04665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HMC44601.1"
                     /translation="MTMRGLIWFVLLFAAAAGLALVGVFDGGQVLLVMPPYRVDISLN
                     LFVVALVVSFIVIYAVLRAVRSVLKMPQRVSAYRTRSRLAKANAALRDAIGHLYAGRF
                     SKAEKSARDSLIADENAGAAGLIGAKAAHEMNEYARRDEWLAKVQDSDWQDARLMATA
                     DMRADGRDADGALVALTEMQAQGGRRLHAQQIALRAQQQLKNWGEVLKLVKTLEKREA
                     LHPAVAVRLRQVASENLLRDRRHNPDALLEFWQSLSATERQSPRLADLAAELLIALDR
                     RNDARKIVEEALNHNWDARLLRRYPDCASPGDALPLIQRAEAWQKERTEDADLMFTLG
                     RLCLHQQLWGKAQAFLESALKLADNEPLKIRTHRALARLHEQLGDSEKASLHYRESAL
                     AMNVV"
     gene            complement(2504..>2985)
                     /locus_tag="VKJ77_04670"
     CDS             complement(2504..>2985)
                     /locus_tag="VKJ77_04670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC44602.1"
                     /translation="TQSRVRQTLALEDKAEADLDAARRSAALSARQAFLGVSSGLAQV
                     RALETAEQSARTSLESNLLGYQVGVRINIDVLNAQDQLFSARRDLAKARYDTLINSLK
                     LKASTASLTDSDVLSLNTLLSPTDDTALTALPSAPSLPHPGAAARKTNAVGRRLMPQ"
BASE COUNT          555 a          908 c          959 g          563 t
ORIGIN      
        1 tcagccaatc cagtcaaacc aaccaggagt ccgcgccgac ggattccagg ccggcttcaa
       61 caccggctca ccaaccggct caatcacgca tgactgattc gatcgattca agtaaaaccg
      121 ctccgcagtc cgctacgtcg actccgtcct cgtcgtcgaa ccctccgaac ccgccgaaca
      181 cgccgttcac gccctacgag tctcagccga aacagcgtgg cggtggcgcc ggcactgcgc
      241 tgctgtggct ggtgctgctg attgtcgtgg tggtcgcggg cgtgggcggt ttcatgctca
      301 accgcaagtt cgatcagcgc gacgcgcaac tcgcgcaacg tctgcaagcg agcgacacgc
      361 aaacggccgc gttgagcgca caggccgatc aggccgccag ttctgtgtcg gccatcaaca
      421 cgcagatcat ccagttccag ggcaaactca ccgacgcgca ggcgcaaagc caggcattgc
      481 aacagcaata ccaggatctc gcgagcaatc gcgacgactg gacgctcgcc gaagtcgagc
      541 agatcctgtc gagcgcgagc cagcagttgc agctcaccgg caacgtccag ctcgcactgt
      601 tcgcattgca aagcgcggac acgcgcctgg ccgccaccac gggtccgcag atcgtgacga
      661 tccgcaaggc catcgcgcag gacatggaca agctgcgcgc aacgccgtcc accgatctca
      721 ccggactggc catcaagctc gatacagcaa tcgatcagat cgactccctg ccgctggcgg
      781 gcgaagcgcc gatcacgccg cccaccgccc acgccgatgc cccgcgtgac accgcctcca
      841 tcgcagcagc gaccggccag ccggtttgga aagtgtggct gcagcagatt gccagcggga
      901 tcgggcagca gttgtcgagc ctggtaacgg tgcgtcgtat agataacgcc gacgccatgc
      961 tcgcatcgcc ggaccaaggt tatttcgtgc gcgaaaacgt gaagctgcgg ttgttgtcgg
     1021 cgcgcttgtc gctgttgtca cgcagtgaac ccgcgctcaa gtcggatctt cacgccgcag
     1081 acacggcgct cggccggtat ttcgaccagt cgtcgggcaa ggtcaaggcg gttcgtacgc
     1141 tcttgcagca agtcgatcag gcgtcgctcg cggtcacggt tcccgatctg aacgcgagtc
     1201 tcgcggcggt ccatcagttc aagcgaggcg gatgatgacg atgcgcggac tcatctggtt
     1261 tgtactgctg ttcgcagcgg ctgcgggcct ggcgctcgtc ggcgtcttcg acggcgggca
     1321 agtgctgctg gtcatgccgc cgtatcgggt ggatatatcg ctgaatctgt tcgtggtggc
     1381 gctggtcgtg tcgttcatcg tgatctacgc ggtgcttcgt gccgttcgca gcgtgctgaa
     1441 aatgccgcag cgggtgtcgg cgtaccggac ccgctcgcgg ctcgcgaagg cgaatgccgc
     1501 gttgcgcgat gccatcggcc atttgtatgc gggacgtttt tccaaggcgg agaagtccgc
     1561 gcgcgattcc ctgatagccg atgagaacgc cggtgctgct gggttgatcg gtgcgaaggc
     1621 ggcgcacgag atgaacgagt acgcgcgtcg cgacgaatgg ctcgccaagg tgcaggacag
     1681 cgactggcag gacgcacgtt tgatggccac tgccgatatg cgcgccgacg gccgcgatgc
     1741 cgacggcgcg ctggtcgcgt tgaccgagat gcaggcgcag ggcggtcgcc gtctgcatgc
     1801 gcagcaaatt gcattgcggg cgcagcagca gttgaagaac tggggcgaag tgctgaagct
     1861 ggtcaagacg ctggagaaac gcgaggcgct gcatccggcg gtcgcggtgc gtttgcgtca
     1921 ggtcgcgtcg gaaaatctgc tgcgtgaccg ccgtcataac ccggacgcgt tgctggagtt
     1981 ctggcagtcg ttgtcggcga ccgagcggca atcgcctcgt cttgctgacc ttgccgccga
     2041 attgctgatt gcactggata gaaggaatga cgcgcgcaag atcgtggaag aagcgttgaa
     2101 ccacaactgg gacgcgcggc tgttgcggcg ttatccggat tgcgcgtcac cgggcgatgc
     2161 gttgccgttg atccagcgcg ccgaggcatg gcagaaggag cgcaccgaag acgcggacct
     2221 gatgttcacg cttgggcggt tgtgtctgca tcagcagttg tggggcaagg cgcaggcatt
     2281 cctggaatcg gcattgaagc ttgcggacaa cgaaccgttg aagattcgca cgcatcgggc
     2341 gctggctcgt ttgcacgaac aactcggcga tagcgaaaag gcgagcctgc actatcgcga
     2401 gagcgcgctg gcaatgaacg tggtttgagt ttttaccggc tgtacaaagc agcgagcttc
     2461 tttcgtattc gtattcgtat tcgaaagaag ctcgctgctt tttttattgc ggcatcaagc
     2521 gacggccaac cgcgttcgtt ttacgtgccg ccgcgcccgg atgcggcaag cttggcgcgc
     2581 tcggcaatgc ggtcagcgcg gtgtcgtcgg taggcgagag cagcgtgttg agcgaaagca
     2641 catcgctgtc ggtcaggctg gccgttgatg ccttcagctt cagcgagttg atcagcgtgt
     2701 cgtaacgcgc ttttgcgaga tcgcgtcgtg ccgaaaagag ctggtcctgc gcgttgagca
     2761 catcgatgtt gatccgcacg cccacctgat accccagcag attcgattca agcgatgtcc
     2821 gcgcggattg ttcggccgtt tcgagtgcgc ggacctgcgc gagtccactc gataccccca
     2881 aaaatgcctg tcgcgccgat aacgccgccg aacgccgcgc cgcgtccagg tcggcttctg
     2941 ccttgtcttc cagcgccaaa gtctgacgca cgcggctttg cgtcg
//
LOCUS       DATGBK010000315         2056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_327618, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000315 DATGBK010000000
VERSION     DATGBK010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327618"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1636)
                     /locus_tag="VKJ77_04675"
     CDS             complement(<1..1636)
                     /locus_tag="VKJ77_04675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HMC44603.1"
                     /translation="MKHSHDSDSPESERPVRADEAHGQADAGERTRNDEPAEGEDRPR
                     RGLRRGPRSLIARRRAVAKTKGADGAAPAAPTGVIAEAPPDGVVAAQVRMPRKDAGSR
                     GPRNGAGSGDGTRTGSVAKPRVPREGSADGAREGQAPREPREPREGGRRPARQAQQPG
                     QAQKRGRRDDAATPAMPAAATAAAGTGDDVFAYVTSPAFDADNTSGDLRAPMLRRGRP
                     APQKRVLEADDDTPKLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRIMPTDQ
                     VRINGKPVKRKLASKPPRILLYHKPTGEIVSHADPEGRPSVFDNLPPMKTAKWLAVGR
                     LDFNTEGLLLLTTSGDLANRFMHPRYSVEREYAVRVVGELSEGMRQKLLHGVELEDGP
                     ANFLRIRDGGGEGTNHWYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPIALPKGL
                     KRGRWEELEDSEVRDLLASVGLKAPAEERGARSAAPRIQPDPLQTSMGIITREPVLSS
                     HGRFAQTTPTRGGPGGRRGAPGGFGGGSSSGGGYAGN"
     gene            complement(1737..>2056)
                     /locus_tag="VKJ77_04680"
     CDS             complement(1737..>2056)
                     /locus_tag="VKJ77_04680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44604.1"
                     /translation="VQFEPKQAVSLTGSETREAVAAIGQDQLQVTPGDAVNRREVAPD
                     AGALTSDAARHALPHAADESDGADNADTPDASKLFDASNAPDESNETDEFNAPDDQTA
                     RRA"
BASE COUNT          298 a          702 c          658 g          398 t
ORIGIN      
        1 ggttgcccgc gtaaccgccg cccgaactgg aaccgccgcc gaaaccaccg ggcgctccgc
       61 gccgtccgcc cgggccgccg cgtgtgggcg tcgtctgcgc gaatcggcca tgcgaactga
      121 gcaccggctc acgcgtgatg attcccatcg acgtttgcag cggatccggt tggatacgcg
      181 gtgcagcgct gcgcgcgccc cgctcttcgg ccggcgcttt cagtccgacc gatgccagca
      241 gatcacgcac ttcgctgtct tcgagttctt cccaacggcc acgcttaagc cccttgggca
      301 acgcgatcgg gccgtgccgg gtacgaatca gccggctcac catcaggccg gccgcctcga
      361 acatgcggcg cacttcgcgg ttccggcctt cagccagtgc cacgtgatac caatgattcg
      421 tgccttcgcc gccgccatcg cggatacgaa ggaagttcgc cggaccgtct tccagctcca
      481 ccccgtgcag caacttctga cgcatgcctt ctgacaattc gcccaccact cgcaccgcgt
      541 attcacgctc gacgctgtaa cgcggatgca tgaaccggtt ggccaggtca cccgatgtgg
      601 tcaacagcaa caacccttcg gtgttgaagt cgagccgtcc gaccgcaagc catttggccg
      661 ttttcatcgg cgggaggttg tcgaagaccg aaggacgacc ttccggatcg gcgtgactga
      721 cgatttcgcc cgtcggtttg tgatacagca ggatgcgcgg cggtttgctc gcgagcttgc
      781 gcttgaccgg cttgccgttg atgcggacct gatcggtcgg catgatgcgc tggccgatat
      841 gcgccggctc accattcacc gatacccgtc cggccacgat cagctcttcc atgtcgcggc
      901 gcgagcccat gcccgcctcg gcgagcacct tgtgcagctt cggcgtgtcg tcgtccgctt
      961 cgagcacgcg cttttgcggg gcggggcgac cgcgccgcag catgggagca cgcaagtcgc
     1021 ccgaggtgtt gtcggcgtcg aatgcaggcg atgtcacata cgcgaaaacg tcgtccccgg
     1081 tacctgcagc ggcggttgct gccgccggca ttgccggtgt tgccgcgtca tcgcggcgac
     1141 cgcgcttttg agcttgtccg ggttgttgag cctgccgcgc cgggcgacgg ccgccttcac
     1201 gcggctcacg tggctcacgt ggcgcctggc cttcccgagc gccgtcggcc gaaccttcac
     1261 gcggaacacg gggcttggcc accgacccgg tgcgtgtgcc atctccacta cccgcgccgt
     1321 tgcgcggccc acgtgagcct gcatccttgc gcggcatgcg cacctgcgcc gcgaccacgc
     1381 catccggggg agcctcagcg attacgccgg tcggcgccgc tggcgctgca ccgtcggcgc
     1441 ccttcgtctt ggcgacggcg cgacggcggg cgatcaggct gcgaggcccg cgccgcaagc
     1501 cgcgacgcgg acggtcttcg ccctcggcgg gttcgtcgtt gcgtgtgcgt tcgcctgcat
     1561 cggcctggcc atgtgcttca tcggcacgaa cggggcgctc ggattcgggc gaatcgctgt
     1621 cgtgggaatg tttcaaaaca acctcaattg tgtcgggtcg cgcgcccgtc gcaggcgcgt
     1681 caaaaaatcc ggccgatggt gattagcagc cgaatgaagg ttcgggcaaa caggcctcag
     1741 gcgcggcgcg cagtctggtc gtccggtgcg ttgaattcgt cggtttcgtt tgattcgtcc
     1801 ggcgcattcg atgcgtcgaa tagcttcgat gcatccggtg tatccgcgtt gtcagcgcca
     1861 tcggattcat ctgcggcgtg cggtaatgcg tgtcgagcag cgtcgcttgt cagtgcgcca
     1921 gcatccggcg ccacctcgcg acggttgacc gcgtcgccgg gcgttacttg taattgatcc
     1981 tggccaatag ccgcaaccgc ttcgcgcgtt tccgagccgg tcagggacac cgcttgcttc
     2041 ggttcgaatt gcaccg
//
LOCUS       DATGBK010000316         1896 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_165758, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000316 DATGBK010000000
VERSION     DATGBK010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165758"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1192)
                     /locus_tag="VKJ77_04685"
     CDS             complement(<1..1192)
                     /locus_tag="VKJ77_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HMC44605.1"
                     /translation="MSNSSCGSGNCACKTKMRDPFDDTDYGTPLRHADIDVTLDIDGT
                     SVTVPAGTSVMRAAIEAGVNVPKLCATDSLEPFGSCRLCLVEIEGKRGYPASCTTPVE
                     AGMKVRTQTNKLQSLRKNVMELYISDHPLDCLTCPANGDCELQDMAGVVGLREVRYGY
                     EGANHLKDKKDESNPYFTYDASKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASE
                     NQPFMESECVSCGACVAACPTATLQEKTVIMLGQPEHSVVTTCAYCGVGCSLKAEMKG
                     SEVVRMVPNKNGDANDGHACVKGRFAWGYATHKDRITKPMIRAKITDPWREVSWDEAL
                     SYAASEFRRIQDKHGVDSIGGITSSRCTNEETYLVQKLVRAAFGNNNVDTCARVCHSP
                     TGYGL"
     gene            complement(1209..>1896)
                     /locus_tag="VKJ77_04690"
     CDS             complement(1209..>1896)
                     /locus_tag="VKJ77_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase-F iron-sulfur
                     binding region domain-containing protein"
                     /protein_id="HMC44606.1"
                     /translation="PVPALVGLFGQPTVINNVITLATVPIIFAKGAAFYRDFGMGRSR
                     GTLPFQIAGNVKQGGLVELAFGVTLRELIYEYGGGTASGRPARAAQVGGPLGTYLPES
                     QWDIPMDYEAYAAVGAVVGHGGIVIHDDTSNLADLAQYAMHFCAVESCGKCTPCRIGS
                     TRGVEVIAKIRAGDTSPKQVTLLRDLCDTMVSGSLCAMGGMTPYPVLSALDHFPEDFG
                     LSKKPSQKAA"
BASE COUNT          362 a          596 c          551 g          387 t
ORIGIN      
        1 tcaggccata accggtcggc gagtgacaaa cacgggcaca ggtatcgaca ttgttgttgc
       61 cgaacgccgc gcgcacgagt ttctgcacga ggtaggtttc ctcgttcgta catctagaag
      121 acgtaatccc gccaatcgaa tccacgccat gcttgtcctg gatgcgacgg aactcgctgg
      181 ccgcgtacga gagcgcttcg tcccagctta cttcgcgcca agggtccgtt atctttgcgc
      241 ggatcatcgg cttggtgatg cggtccttgt gcgtggcgta gccccatgca aagcggcctt
      301 tgacgcacgc gtgaccatcg ttggcatcgc cgtttttatt cggcaccatg cgcacgactt
      361 cgctgccctt catctcggct ttgagcgaac agccgacgcc gcaatacgcg cacgtcgtca
      421 caaccgaatg ctctggctgg ccgagcatga tcacggtttt ttcctgcagc gtcgcggtcg
      481 ggcaagccgc cacgcacgca ccgcacgaca cgcattcgga ttccatgaac ggctggtttt
      541 cactcgcggc cacgcgcgat tcgaaacccc gtcccgcgat ggtcaacgcg aacgtcccct
      601 gcgtttcctc gcatgcgcgc acgcagcgat tacagacgat gcactttgac gcgtcgtacg
      661 tgaaatacgg attcgattcg tccttcttgt ccttcaggtg attcgcgcct tcatagccat
      721 agcgaacctc gcgcaagccg accacgcccg ccatgtcctg caactcgcag tcgccgttgg
      781 cggggcaggt gaggcaatcg agcgggtgat cggagatata caactccatc acgttcttgc
      841 gcagcgattg cagcttgttc gtctgcgtgc gcactttcat cccggcttcc acgggcgttg
      901 tgcacgacgc cggatacccg cgcttgcctt caatttcaac caggcacaga cggcacgaac
      961 cgaacggctc aagcgaatcc gtcgcgcaaa gcttcggcac gttgacgccg gcctcgatcg
     1021 ccgcgcgcat caccgacgtt ccggccggta cagtcaccga agtaccgtcg atgtcgagcg
     1081 tcacgtcgat atccgcatgg cgcagcggcg tgccgtagtc ggtatcgtcg aagggatcgc
     1141 gcattttcgt cttgcacgcg caattgccgg aaccgcagga tgagttggac atggttgtgt
     1201 tccttctttt aagccgcttt ctgcgacggc tttttggaaa gaccgaagtc ttcagggaaa
     1261 tggtcgagtg cagacagcac cggatagggc gtcatgccgc ccatcgcgca gagggagcca
     1321 gaaaccattg tgtcgcagag atcgcgcagc agcgtcactt gtttcggcga tgtatcgccg
     1381 gcacggatct tcgcgatgac ttcaacaccg cgcgtcgatc caatgcggca tggcgtgcat
     1441 ttgccacacg attcgactgc gcaaaagtgc attgcgtact gggcgagatc ggcgagattc
     1501 gaggtgtcgt catgaatcac gataccgcca tgtccgacca ccgcgccgac cgccgcgtag
     1561 gcttcgtagt ccatggggat gtcccactgg ctttccggaa gatacgttcc gagcggacca
     1621 ccgacttgcg cggcgcgcgc cggccggcca ctggccgtgc caccgccgta ttcatagatc
     1681 agttcacgca aggtcacgcc gaacgccagt tctacgaggc cgccttgctt cacgttgcct
     1741 gcaatctgga acggcagcgt gccgcgtgag cggcccatgc cgaagtcgcg ataaaacgcg
     1801 gcacccttgg cgaagatgat gggtacggtg gccagcgtga tcacgttgtt gatcacggtc
     1861 ggctggccga acaagccgac caaagcaggc accggc
//
LOCUS       DATGBK010000317         1979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_189000, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000317 DATGBK010000000
VERSION     DATGBK010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189000"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..571)
                     /locus_tag="VKJ77_04695"
     CDS             complement(<1..571)
                     /locus_tag="VKJ77_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44607.1"
                     /translation="MNPDAQHSRQRQPARAAGAAFVGTTIEWYDFYIYATASALIFGK
                     LFFPLHDPFLSTLASFGTFAVGFFARPFGGLVFGHLGDRIGRKKALLTTLVIMAIGTV
                     GIGFLPTFERIGVWAPVLLIALRVAQGIAIGGEWGGAVLLAGEHAPAERRTFFASFAQ
                     LGSPAGLILSLIAFRIVSSMPAEDFWSWGW"
     gene            complement(629..1819)
                     /locus_tag="VKJ77_04700"
     CDS             complement(629..1819)
                     /locus_tag="VKJ77_04700"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010098422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC44608.1"
                     /translation="MSVKTGALQGLKVIDLSRVLGGPYCTQAIADHGATVIKLEPPAG
                     DETRGWGPPFVGETASYFEGVNRNKQGIVVDLTREEGREIVLQLLADADVLIENFKPG
                     TLERWNMGYQQVLKARFPKLIHCSISGFGPDGPLGGLPGYDAVIQAMTGLMSVNGEAG
                     AGPLRVGLPIVDMVTGLNAFAGILLALHERALSGLGQSIDIALYDCGVSLLHPHLPNY
                     FGSGKTPVRTGNAHPNIAPYDSYRTGSEPIFLAVGNDRQFLKLCTHLGAPQLAADARF
                     IDNRTRCGHREELKEALEALLATHECALLAAMLIREGVPCGPVQGVDDVARHPHTLHR
                     EMVVEMGAYRGTGTPIKLSRTPATYRSRPPALGADTLAVLDSLGIDRETQTKLIAAGV
                     VKAR"
BASE COUNT          404 a          620 c          586 g          369 t
ORIGIN      
        1 gccatcccca actccagaaa tcctcggcag gcatcgacga aacgatccgg aaagcgatca
       61 gcgacaggat caatcctgct ggactcccca actgcgcgaa ggacgcaaag aaagtacggc
      121 gttcggcggg tgcgtgctca ccggccagca gcaccgctcc tccccattca ccgccgatcg
      181 caataccttg tgcaacccgc agcgcgatca gcaatacggg cgcccatacg ccaatgcgct
      241 cgaaggtcgg cagaaaacca atcccgacag tgccgatcgc catgatgacc agcgtcgtca
      301 gcaaggcttt cttccggccg atacggtctc ccaggtggcc gaacaccagt ccgccgaacg
      361 ggcgcgcaaa gaagccgacc gcgaacgtcc cgaatgaagc gagcgtactg agaaacggat
      421 cgtgcaaagg gaaaaacagc ttgccgaaga tcagcgcgga agcggtcgca tagatgtaga
      481 agtcatacca ttcaatcgta gtaccaacga aagccgcacc tgcggcccga gcgggctgac
      541 gctgtcttga atgctgtgcg tctgggttca tttgcttgtc tcctgtgtag gctttgcgca
      601 cggactcgga cggtccgctt cgcgcggttt atcgggcttt gaccacacct gctgcaatca
      661 gctttgtctg cgtttcccgg tcaatgccca gtgaatcgag cacggcaagc gtgtctgctc
      721 caagcgcggg aggacgtgat ctatacgtcg cgggcgtgcg ggacaacttg atcggcgtac
      781 cggttccgcg atacgcgccc atctccacca ccatctcccg atgcagcgta tgcggatggc
      841 gcgcgacatc atcgactcct tgcacagggc cgcacggcac gccttccctg atcagcatgg
      901 cagccagcaa cgcgcattcg tgcgtagcaa gcagcgcttc gagcgcttcc ttcagttctt
      961 cacgatgccc acagcgcgtg cggttgtcga taaagcgcgc atcggcggca agctgtggtg
     1021 cgcccagatg cgtgcacaac ttcaggaact ggcgatcatt tccgacagcc aggaaaatcg
     1081 gctcgctgcc ggtacgataa ctgtcgtaag gcgcaatatt cgggtgcgcg ttgccggtac
     1141 gaacgggcgt cttgccggag ccgaagtagt tcggcagatg cggatgaagc agcgataccc
     1201 cgcagtcgta aagtgcgata tcgatcgact ggccgagtcc gctcagggct cgctcgtgga
     1261 gcgcaagaag aatgccggcg aacgcgttca gcccggtcac catgtcgacg ataggcaagc
     1321 ccacccgcaa cggccccgct cccgcttcgc cgttcacgct catgaggccg gtcatcgcct
     1381 ggatgacggc gtcgtagccg ggtaagccac ccagagggcc gtccgggccg aaacctgaga
     1441 tcgagcaatg gatgagtttg gggaagcgtg ccttcagtac ctgctgatag cccatgttcc
     1501 agcgttcgag cgtgccgggt ttgaagttct cgatcaggac atcggcgtcg gccagcagtt
     1561 gcagcacgat ttctcgcccc tcttcacgcg tgaggtcgac cacgatcccc tgcttgttgc
     1621 gattcacccc ttcgaagtac gacgcggtct ctccgacaaa aggcggtccc cagcctcgcg
     1681 tttcatcgcc tgcgggaggt tcgagcttga tgacggtggc gccatgatca gcgatggcct
     1741 gcgtgcaata cgggccaccg agcacgcgac tcagatcgat gactttcagc ccctggagtg
     1801 ctccggtttt cacgctcatg atgcttgctc actttgctcc ggcagcagcc gaagcgcatc
     1861 gtccagcgac agcggcacct cggctacgat caacgccagg gtttcctgcg tgagatcgtc
     1921 tgcgcctatt gcaagcggat ctcgcgggag aagcttgtat cgggcgatca ggtgggcaa
//
LOCUS       DATGBK010000318         1798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_304500, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000318 DATGBK010000000
VERSION     DATGBK010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304500"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..614)
                     /locus_tag="VKJ77_04705"
     CDS             complement(<1..614)
                     /locus_tag="VKJ77_04705"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HMC44609.1"
                     /translation="MQKTSKSADRLARIIEQFSKLTITVLGDLIADEFIYGEISRVSR
                     EAPVLILRHRERTVVPGGAGNAIYNLADLGVHVLPVGVIGDDEAGRMLLQAFRHKHIS
                     VSAIRRIKGRSTVTKTRLLAGTTHSPRQQVIRVDREPETPLDRSTVRDITFQARGYVR
                     ASDALLISDYGYGAATPEIFDNIRSHASLNGVPVTLDSRFRMLA"
     gene            complement(775..1578)
                     /gene="lpxK"
                     /locus_tag="VKJ77_04710"
     CDS             complement(775..1578)
                     /gene="lpxK"
                     /locus_tag="VKJ77_04710"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: protein motif:HMM:TIGR00682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HMC44610.1"
                     /translation="MNPLSAIFGAGVSMRNALYDRGIFQVNKLARPVVSIGNISVGGS
                     GKTPFVVALGELLKQRGIAFDVLSRGYGRSSTEIAVIDPNGSPAQFGDEPLLIAHKLQ
                     VPVIVGADRYQAGLVAENRFSGKLHLLDDGFQHRRLHRDFDIVLLPAEDYGGVLLPAG
                     RLREPLAALRRADAVVLPDPLEQSPDVTRVWIVRRRIEFSDAGGTLVAFCGIGRPRQF
                     FDGLKAGDQEIAGKIISETIIATISTISTAWCASNTKSARMDSSPLKKT"
     gene            complement(1575..>1798)
                     /locus_tag="VKJ77_04715"
     CDS             complement(1575..>1798)
                     /locus_tag="VKJ77_04715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44611.1"
                     /translation="FREIVSIFEQGDAIKIVTAETVGFQFLALLQQPEERRRLGRLAK
                     GLFERHAGATRRTLEALGPLLTQQKRDGR"
BASE COUNT          361 a          530 c          558 g          349 t
ORIGIN      
        1 taagccagca tgcgaaagcg ggagtcaagc gttaccggga ccccgttgag cgatgcgtga
       61 gagcggatgt tgtcaaagat ttccggcgtt gccgctccgt aaccgtagtc ggaaatcaac
      121 aaggcgtcag aggcgcgcac gtagccgcgg gcctggaatg tgatatcgcg gacggtagaa
      181 cggtccagcg gcgtttccgg ctcgcggtcc acgcgtatca cctgttggcg cggcgagtgc
      241 gtggtcccag ccaggaggcg cgtcttggtc acggtgctgc ggcctttaat cctacgaatg
      301 gcgctgacgg aaatgtgctt gtggcgaaat gcctgcagca acatgcgccc ggcttcgtcg
      361 tcgccgatca cgcccacggg aagaacgtga acaccgaggt cggccaggtt gtagatggcg
      421 ttgccggcgc cgccgggcac caccgtgcgc tcgcgatgtc gcaggatcag taccggcgct
      481 tcccgggaaa cccgcgagat ctcgccgtaa ataaattcgt cggcgatcag gtcgccaagg
      541 accgtaatgg tcagcttgga aaactgctcg atgatcctgg cgagccgatc ggccgatttt
      601 gaggtttttt gcatggactc acgattttct catgccggag ctagagtctg cagcctgaac
      661 ggtgttctag ggtctgaagc atctcagtca tcgcctgctc cggggattcc acttcgatgc
      721 gaagccgggc agttcgcagc ggttgaagct gtgcggcaag tggtcccaag ttaatcacgt
      781 ctttttcagt ggtgatgaat ccatccgcgc cgatttggtg ttggaggcgc accaggcggt
      841 cgatatcgtg ctgatcgtag cgatgatggt ctcggaaatg atcttgcccg cgatttcctg
      901 atcgccggcc ttcaacccgt caaagaattg tcttgggcgt ccgatgccgc aaaaagcaac
      961 cagcgtgccg ccggcatcgg agaattcgat ccgcctgcgc acgatccaaa cgcgcgtgac
     1021 gtcgggtgac tgctccagcg ggtccggcaa cacgaccgcg tcggcgcgtc gcaatgcagc
     1081 gagcggctcg cgcaagcgtc ctgctggcag caaaacgcca ccgtagtctt ccgccggcag
     1141 caagacaatg tcaaaatcgc gatgcaggcg gcggtgttga aaaccgtcat ccagcaaatg
     1201 cagcttgccc gagaaacgat tctcggcgac gaggccggct tgataacgat cggcgccaac
     1261 aatcaccggc acttgcagct tgtgcgcgat caggagcggc tcatcgccga attgagcggg
     1321 cgacccgttg ggatcgatta cagcgatctc ggtggaactg cgtccgtagc cgcgggagag
     1381 gacatcgaac gcgatgcccc gttgcttcag caactctccc agggcaacca caaatggggt
     1441 ctttccactg ccgcccacgg agatgttgcc aatgctgacg accggacggg ccagtttatt
     1501 tacctggaaa ataccgcgat catacagcgc gtttcgcatc gagacgcccg ccccgaagat
     1561 ggcagagagc gggttcatcg gccgtctcgc ttttgctggg tcagcagcgg ccccagcgct
     1621 tccagtgttc ggcgcgtcgc tccagcatga cgctcaaaca agcctttcgc aaggcggccc
     1681 aggcgacggc gctcctctgg ttgctgcagc aacgcaagga actggaagcc aacggtctcg
     1741 gcggtcacga tctttatcgc gtcaccctgc tcaaagatgc tgacgatctc gcggaagt
//
LOCUS       DATGBK010000319         5433 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_189051, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000319 DATGBK010000000
VERSION     DATGBK010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5433
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189051"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1080
                     /locus_tag="VKJ77_04720"
     CDS             <1..1080
                     /locus_tag="VKJ77_04720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008541120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HMC44612.1"
                     /translation="FADQVEAAGMTFIGPEPRSIRTMGDKVAAKRAMRAAGVPCVPGP
                     DGGLPEDPQGILRAAAEIGYPVIVKAAGGGGGRGMRVVPDAAQLLDAVAVTREEARRA
                     FGKPELYVEKFLEHPRHVEIQVLCDTHGNALWLGSRDCSMQRRHQKVLEEAPAPGINA
                     DLIRQVGERCVEACRQNNYRGVGTFEFLYENGEFYFIEMNTRLQVEHPVTEMTSGIDV
                     VREQIRVAQGHALSITQADIFINGHSLECRVNAEDPSTFMPCPGRISHWELPGGNGVR
                     VDSHMSAGLTVPPYYDSLIAKVVTHGASRAEALARMRIALSEMRIEGIRTNVPLHRAI
                     LDDNDFCAVGVDIHHLERWLARRTN"
     gene            1173..1844
                     /gene="pxpB"
                     /locus_tag="VKJ77_04725"
     CDS             1173..1844
                     /gene="pxpB"
                     /locus_tag="VKJ77_04725"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HMC44613.1"
                     /translation="MTPIDPDQKPRISLLGTSAMLFEAPGELDLQTQRRIWALGQRAA
                     TWEGIREAVPGMSNLMLTFDRPPRQPASLAAALHDAWEAAEELSLEGKTVVLPVQYGG
                     DFGPHLSDVVAHTGLTVDEIVALHSEPLYTVYALGSHPGYCYLGGMDPRIAAPRRKVP
                     VLGLPGGAVSIGGVQTGVSASAGPSGWNTIGHTDMSFFDPTRTDPAMFAPGDMIRFSV
                     ERIVR"
     gene            1841..2845
                     /locus_tag="VKJ77_04730"
     CDS             1841..2845
                     /locus_tag="VKJ77_04730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HMC44614.1"
                     /translation="MIEVLSNAALATIQDQGRQGYLRYGVGTSGAMDRVALAIGNLML
                     GNPDDAAGIEIPLFPFRVRFTQDAAFALTGADCSARLGERPVLPWWTLQAKKDDVLTI
                     GIPASGARCYLLLKGGVDVPVVLGSRSTQLRGEFGGFLGRQLKKGDVVQAAAVESAHS
                     ETINDAAGFGVTPPSWTLGEPETSPVTDPADTVVRVLPAAEYESYEQDSIEAFWRESW
                     KVTPQSDRYGYRLGGPVLISKRPVEMRSHGIVPGVIQVPPSGQPIIQLRDAQPSGGYP
                     KIGTVIEADLWRLAQARIGSKLRFVQTSYEEAVEALDELERYMTKLRNLVGLHRGTRP
                     "
     gene            2850..3272
                     /locus_tag="VKJ77_04735"
     CDS             2850..3272
                     /locus_tag="VKJ77_04735"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HMC44615.1"
                     /translation="MTQRKELQINELRQITGWLETAGIGFIEIGGKGTLVRLTLEGNG
                     AANPPPAQPAPSVRETQVIAMSSGVLLTCHPMRATPMVEPGAAVRQGDVLGLLRVAQL
                     CLPVISPSDGVVVKWLVEPGVTVGYGTALMTLAPAGNL"
     gene            3286..4053
                     /locus_tag="VKJ77_04740"
     CDS             3286..4053
                     /locus_tag="VKJ77_04740"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HMC44616.1"
                     /translation="MEIDLNADLGEGFGPYRMGEDEAMMEIVSSANVACGYHAGDPVI
                     MDRTVRMTLGRDIDLGAHVGFPDLMGFGRRPIQADPLELAKYVLYQMGALAGIAKAAG
                     AHLTHMSFHGALGNMAAASYELAEPLVRAVADFDNRIIVSVSTNTQIERAADKIGLRV
                     ANTFLADRAYDNEGNLVSRKLDGAVIKDRAAVLARVTQLLEDGTVTTITGQRLKIVAQ
                     SILLHGDTPGAVELARTVRGAIESAGGRIVPVSQLIK"
     gene            4097..4837
                     /locus_tag="VKJ77_04745"
     CDS             4097..4837
                     /locus_tag="VKJ77_04745"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC44617.1"
                     /translation="MPFSDYKTALVTGASTGMGAAIVERFCREGLEVHALARNAERLN
                     ELAERTGCIPHAIDVCDLDAVTKLTEEVPFDIVVNNAGVSRKGSILDASVEDVDVQVE
                     VNLQAVLHIVRLTMPGMVARDRGHIVNISSIAAIYNFGGNSIYHATKAGIHALSRQLR
                     VDATGKRVRVTEICPGRVATDIFGHVHGDIEAARKQYIDGFELPLPSDIADAIAFAIA
                     APLAVNISNMEILPTLQVPGGLTTIKRD"
     gene            4949..>5433
                     /locus_tag="VKJ77_04750"
     CDS             4949..>5433
                     /locus_tag="VKJ77_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013209703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC44618.1"
                     /translation="MRSSVLVTRASFPDIVEKLNEFFDVTDNPSDTLWTQPELIAGLQ
                     GKRGAVTAGSDKIDATLLDACPELKAVCNIGVGYNNVDVDACTARGVLVTNTPDVLTQ
                     TTADFGFALMMAAARRITESEHFLRAGEWVTTGRFDMFVGVDVYGAKLGILGMGRIGQ
                     E"
BASE COUNT         1029 a         1623 c         1764 g         1017 t
ORIGIN      
        1 tttgccgacc aggtcgaggc ggcgggcatg acgttcatcg gcccggaacc gcgctccatt
       61 cgcaccatgg gcgataaggt agccgccaag cgcgcgatgc gcgcagcggg cgtgccttgc
      121 gttcccggcc ccgacggcgg cttgcctgag gatcctcagg gcatcctgag ggcggctgcc
      181 gagatcggct atccggtgat cgtgaaagcg gccggcggcg gaggaggccg cggcatgcgc
      241 gtcgtgcctg acgccgcaca attgctcgat gctgtcgccg tgacgcgcga ggaagcccgc
      301 cgcgcattcg ggaaacccga gctctatgtc gagaaattcc tcgagcatcc gcgccatgtc
      361 gagatccagg ttctatgcga tacccacggc aacgcgctct ggctcggatc gcgcgattgc
      421 tcgatgcagc gccggcatca gaaggtgctg gaagaggcgc ctgcgcccgg catcaatgca
      481 gacctcatcc gtcaggtggg tgagcgctgc gtggaagcat gtaggcaaaa caactaccgg
      541 ggcgtaggga cgttcgaatt tctctacgag aacggcgagt tctatttcat cgaaatgaac
      601 acacgtttgc aggtcgaaca tccggtgacc gagatgacgt cgggtatcga tgtagtccgc
      661 gagcagatcc gcgtcgcgca aggtcacgcg ctttcgatca cgcaggcgga tatcttcatc
      721 aacggtcact cgctggaatg ccgtgtcaat gcggaagatc cgtcgacgtt catgccttgc
      781 cccggccgca tctcgcattg ggaactgccg ggcggcaacg gcgtgcgcgt ggattcgcac
      841 atgagcgcgg gcctcacggt gccgccgtat tacgactcac tgatcgcaaa ggtcgtgacc
      901 catggcgcga gtcgcgccga agcgctggcg cgcatgcgga tcgccttgtc ggagatgcgc
      961 atagaaggta ttcgaacgaa tgtgccgctg catcgggcaa tactcgacga taacgacttc
     1021 tgcgcggttg gcgtagatat tcaccatctg gaacgctggt tggcaaggag aacgaattga
     1081 gcccgactct cgatcgcgcg ctcgacgcag cgactacggg cgcgacgact tccgatcgtc
     1141 cccagcagca tgtgcaaagg aatgcgcact cgatgacccc gatcgacccc gatcaaaagc
     1201 cgcggatcag cctgcttggg acgagcgcga tgctgtttga agcacccggt gaactcgatc
     1261 tgcagacgca gcgccgcatc tgggcgctcg ggcaacgggc cgcgacgtgg gaggggattc
     1321 gagaagccgt tcccggcatg tcgaacctca tgctcacgtt cgaccggccg ccgcgccagc
     1381 cagcctcgct cgccgctgcg ctgcacgacg cctgggaggc ggcagaagag ctgtcgctcg
     1441 aaggcaagac cgttgtgctg cctgttcaat acggtggcga tttcggcccg catttgagcg
     1501 atgtagtcgc gcacacaggc ctcacggtgg atgagatcgt cgcgctgcat agcgaaccgc
     1561 tttacaccgt ctatgccctc ggcagtcacc cgggatattg ctatctcggt ggcatggacc
     1621 cacgcatcgc cgcgccgcgc cgcaaggtgc cggtacttgg attgccgggc ggcgcggtat
     1681 cgataggtgg agtccagacc ggcgtctcgg cgtcagcggg accgagcggc tggaacacga
     1741 tcggtcacac ggacatgtcg ttcttcgacc cgacccggac agaccccgcc atgttcgcgc
     1801 ccggtgacat gatccgcttc agtgtcgaaa ggattgtccg atgatcgagg tactttccaa
     1861 cgccgctctg gcgacgattc aggatcaggg ccgccagggc tatctgcgat acggcgtggg
     1921 aacgtcgggt gcgatggacc gcgtggcgct ggccattggc aacctgatgc tgggcaatcc
     1981 cgacgatgcc gccggcatcg aaattccgct gttcccgttt cgcgttcgct tcacccaaga
     2041 cgctgcgttc gcgttgacgg gcgctgactg ctcggcgcgt cttggcgagc gcccggtctt
     2101 gccgtggtgg accttgcagg cgaagaagga cgatgtgctt acgataggca ttcccgcaag
     2161 tggcgcgcgg tgttatctgc tgctcaaggg gggcgtggac gtgccggtcg tgctcgggtc
     2221 gcgcagtacg caactgcgag gcgagttcgg tggtttcctc gggcggcaac ttaagaaggg
     2281 cgatgtggtt caggcagcgg cggttgaatc cgcgcacagc gagacgatca atgacgcagc
     2341 cggcttcggc gtgacaccac cttcatggac gcttggcgag cctgaaacga gtccggtgac
     2401 agaccccgcc gacactgttg tgcgggtgct gccggctgcc gaatacgagt cttacgagca
     2461 ggactccatc gaagcgttct ggcgggaaag ctggaaggtc acgccgcaaa gcgatcgcta
     2521 cggatatcgg cttggcgggc cggtgctgat ttcaaaacgt ccggtggaga tgcgctcgca
     2581 cggcattgtg ccgggtgtga tccaagtgcc gcccagtggc cagccgatca tccagttgcg
     2641 agacgcgcag ccctcgggcg gttacccgaa gatcggtacg gtcatcgaag cggacctttg
     2701 gcggctggcg caggcgcgca ttggctcgaa gctgcgcttt gtgcagacca gctacgaaga
     2761 ggccgtcgag gcgctggatg aacttgagcg ctatatgacg aagttacgca acctcgtcgg
     2821 gctccatcgc ggcacaaggc cgtagcgtga tgacacagag aaaagaattg cagatcaacg
     2881 agcttcgaca gatcaccgga tggctcgaaa cggcgggcat cgggtttatc gaaatcggcg
     2941 ggaaagggac gttggttcgg ctgacgctcg agggcaatgg cgcggcaaat ccgccaccag
     3001 cgcagcctgc gccaagcgtg cgggaaacgc aggtcatcgc catgtcctcg ggtgtcttgc
     3061 tgacatgcca tccgatgcga gcaacgccta tggttgaacc gggtgcggcg gtcaggcagg
     3121 gcgatgtgct gggcttgctg cgcgttgcgc agctttgcct tccggtgata tcgccttctg
     3181 acggtgtcgt cgtgaagtgg ctggtcgagc cgggcgtgac cgtcggatac gggaccgcgc
     3241 tgatgaccct cgcgccggcc ggtaaccttt aaacggagtg acaccatgga aatcgatctg
     3301 aacgcggacc tgggcgaagg cttcggcccg taccgcatgg gcgaagacga agcaatgatg
     3361 gagattgtct cgtcggccaa cgtggcgtgt ggctatcacg cgggcgatcc ggtgatcatg
     3421 gaccggacgg tgcgcatgac ccttggacgg gatatcgacc ttggcgcgca tgtcggcttt
     3481 cccgatctca tgggcttcgg acgtcggccg attcaagctg atccgcttga gctcgccaag
     3541 tacgtgctgt accagatggg cgcgctcgcg ggcattgcga aagctgccgg ggcgcatctc
     3601 acgcacatga gttttcatgg cgcgctcggc aacatggccg cggcatcgta cgaacttgct
     3661 gagccgcttg tgcgcgcagt agccgatttc gataaccgca tcatcgtcag cgtatcgacg
     3721 aacacgcaga tcgagcgtgc cgccgacaaa atcggcttgc gggtcgccaa tacctttctc
     3781 gccgatcgtg cctacgacaa cgaaggcaac ctcgtctcgc gcaagctgga cggcgccgtg
     3841 atcaaggatc gcgcagccgt gcttgcccgc gttacgcagt tgctcgagga cggcacggtc
     3901 acgacgatca ccggtcagcg cctgaagatc gtcgcgcagt cgatcctgct ccacggggac
     3961 acgcccggtg cagtcgaact cgcgcgcacg gtgcggggcg cgatcgaatc ggccggcggg
     4021 cgcatcgtgc cggtatcgca gctcatcaag tgagcatcgt ttttttttga atcaagaaca
     4081 gggacagggg taattcatgc cgttttcaga ctacaagacc gctttagtga ccggcgcttc
     4141 aaccggaatg ggcgcagcga ttgttgagcg cttctgccgc gaagggctcg aagtgcacgc
     4201 gctcgcgcgc aacgcggagc ggctgaacga actggcagag cgcaccggat gcatcccgca
     4261 cgctatcgat gtctgcgatc tcgatgccgt gaccaagctc actgaggaag tgccgttcga
     4321 tatcgtcgtg aacaatgcgg gcgtgtcgcg caaaggctcg attctcgatg ccagcgtcga
     4381 agacgtcgat gtgcaggttg aagtgaatct tcaggcggtg ctgcacattg tcaggttgac
     4441 catgcccggc atggtggcgc gcgaccgcgg ccatattgtg aacatcagct cgatcgcagc
     4501 catctataac ttcggcggca actcgatcta tcacgcgacc aaggcgggta ttcacgcgtt
     4561 gtcgcgccag ttgcgcgtcg acgcaaccgg caagcgcgtg cgcgtgaccg agatctgccc
     4621 gggtcgcgta gccaccgata tcttcgggca cgtgcacggc gatatcgagg cggcgcgcaa
     4681 gcaatacatt gacggattcg aactgccttt gccgtccgat attgccgacg ctatcgcgtt
     4741 cgcgattgcg gccccgctcg cggtcaacat cagcaacatg gaaatcttgc cgaccttgca
     4801 ggtgccgggc gggctgacca cgatcaagcg cgactaagcc gctcgcacgc acgcgccgcc
     4861 actgcgaccc aatgcgccgt gccggccgtg cgtgtgcatg catgccagct ccttcgtact
     4921 tctcatcgaa tcatcaggag attcccctat gcgctcctcc gttcttgtca cgcgtgcatc
     4981 gtttcccgac atcgtggaaa agctgaacga atttttcgac gtgaccgata acccctccga
     5041 cacgttatgg actcagccgg aactgatcgc gggtctgcaa ggcaagcgag gggcagtcac
     5101 ggcgggtagt gacaagatcg atgcaacgct gctcgacgcg tgtccggaac taaaggccgt
     5161 gtgcaacata ggtgtgggct acaacaatgt cgatgtcgat gcgtgcaccg cgcgcggtgt
     5221 gctcgtcacc aacacgccgg acgtgctgac acagaccacg gccgatttcg gcttcgccct
     5281 catgatggcc gcagctcgcc gaatcaccga gtctgagcat ttcctgcgag caggcgaatg
     5341 ggtcacgacc ggccgcttcg atatgttcgt gggcgtcgac gtgtacggcg ccaagctcgg
     5401 catcctgggt atgggccgca ttggtcagga gat
//
LOCUS       DATGBK010000320         5136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_73243, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000320 DATGBK010000000
VERSION     DATGBK010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5136
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73243"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..892)
                     /locus_tag="VKJ77_04755"
     CDS             complement(<1..892)
                     /locus_tag="VKJ77_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HMC44619.1"
                     /translation="MDVPQKLDSLTAFLATVEILSPFTAQEIEQLAEQAETRFHAFGE
                     TVCNAGDTADGLFVIKAGSVRIFTEENGKEISMGVRREREVFADIAMLREYRHESSVR
                     SSGKTELLFIPRRVIEPIVASNPAALAFVTSYVAISSAGGFVARLFDLRGKIDKAELE
                     ASVRSVGVKRVAAGKEIIHQDARDDRRLYVVRQGEVRIVRKEGASEYLLATLRAGEVF
                     GEKACLLRQEQQATAIANVDTRLLVVPEKTVHLVLERNPKLREVLDDRIRFIERELQR
                     QKKLEERRSLPAMLDLHSKPE"
     gene            complement(921..1673)
                     /locus_tag="VKJ77_04760"
     CDS             complement(921..1673)
                     /locus_tag="VKJ77_04760"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HMC44620.1"
                     /translation="MTAIVRIDDEVVDADEFIRVLKLTGQFEGLVEQLVRDKLTVHAA
                     KKQRIDVSEGEIQVRADQFRRVRGLHRAADMNRYLDALGVNLDEFETFITDTLYQEKM
                     LEQIGGETDVEAFFKLNSPRFDSVEISHIVLETPSQAKEMISYLQDDPDSFTEMAREH
                     SIADTRDQGGALGKVLRGSLAAEIEAKVFNAAAGDLLGPFPTPDGTAYEIFAVTAKRP
                     AVLDADVASEIRRLLREQWLQARAQEHIIEAR"
     gene            complement(1726..3099)
                     /locus_tag="VKJ77_04765"
     CDS             complement(1726..3099)
                     /locus_tag="VKJ77_04765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HMC44621.1"
                     /translation="MKNDAHPKSFAESLGDHSVEGISILVAEPARLTQALIYAMVALV
                     VSALVWSFIGRADVIVTAQGTLSPESEVRRFYAPIDGELADVYIAEGQPVSKDDVVAR
                     LNARGAIQAATNALEAQLKLDDAERDWKEFPEKKLLMERKAAALKDQMEVEEHLHQTR
                     VAEGTTKLAEGQKAQVDEARTELDSARRTRDAAKQELDRYARLLALPGGGGVSEIQVE
                     SKRNAYMEADNATRIAQSKLTELDFRLSHEYSQAKAQLETSGQEATSLKLQYESAMRE
                     IASAGDKLRLQLQTARLVAEAADRIRFENIDKDNFLLILAPVSGVITDVTSTQPGDKI
                     QANTPLGGIAPKDARPVLKIEIAEHDRAFLREGQAVKLKFNAFPYQRYGVVDGTLEFI
                     SPATKPSPETKQPVYEGRVTLARDYYQVADTRYPLRYGMTATAEIVVRERRLIDLGLD
                     PFRQVAG"
     gene            complement(3077..>5136)
                     /locus_tag="VKJ77_04770"
     CDS             complement(3077..>5136)
                     /locus_tag="VKJ77_04770"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HMC44622.1"
                     /translation="LISKADETFAQYSDRYPHQVNYVSRRHAHIFVKAGQPFVEDLGS
                     TNGTFVDGKRVGETAVPLQDGASLAFGGNHFTYIVSVRREAESGVTTTAATATATVTG
                     AAVQVAPDDLDKTTFITTAHSFLDIFCVDQNQPSDDEINRESLPDERVPARRRSRNRS
                     VRFVSDLGVAFGGGQAMKRRVLLCGLAFVAAMIAIGSALYFSSTAERNLRSLVAHGDY
                     RQAVPVVNAYLDKHPNDPQAMALGTEALLKGYLPDWLDQLKHRNFDAARSVVSQMKTL
                     GATNADARLLVNEIDWVGRLETFMASRERPDAPIRIYADENRISELLKQWESDPSGHQ
                     RRLDRIASTVPAFRDLYAVALSHLRKLESDDSVYLAAIERLKASIDKALAPGGDPDAL
                     SAEIADYADKYPRLAGLDRVQDDLLPYLALEHALQSRELGPLIDAMQKARFTTPPFLA
                     AQHQLDAKGLPTPDVVKRYVAVSDAWRNGQTEPAMTGLRSMAGGPWADAVSAELAHKQ
                     AVASQFADLQKSRGAQGYDDRVLSFYESLDPVADVWFVNAIQTDLSALRQKALARADE
                     WLNRAQTAWAQYRTNGAIGGDQRLETGLSDGFKKQAKLLTDAWSGAQRAAQLLRQLKA
                     DRSALADKLLAEINAEVDLQRRSLIQLSSVLDPGLLSAKLALIGGDKTSYKGANGEER
                     RAP"
BASE COUNT          887 a         1682 c         1506 g         1061 t
ORIGIN      
        1 actccggttt cgagtgcagg tcgagcatgg ccggcaacga gcgccgctcc tccagctttt
       61 tctggcgctg caactcgcgc tcaataaaac ggatgcggtc atccagcact tcgcgcagct
      121 ttggattgcg ttcgagcacg aggtgcacgg ttttttccgg caccacgagg aggcgtgtat
      181 ccacgttcgc gatggccgtc gcctgctgct cctgtcgcag caggcaagcc ttctcgccga
      241 agacctcgcc cgctctcaag gtagcaagca gatactcgct cgcaccctcc ttgcgcacga
      301 tccgtacttc gccctgccgg accacgtata gccgccggtc atcgcgcgca tcctgatgga
      361 tgatctcctt gcccgcggcg acccgcttca cgccgacgct gcgtaccgac gcctccagct
      421 cggccttgtc gatcttgcct cgcaggtcga agagcctggc gacaaaaccg ccggccgaac
      481 tgatcgcgac atagctcgtg acgaacgcga gcgccgccgg attactcgcc acgatcggct
      541 cgatcacgcg gcgcggaata aacagcaatt ccgtcttgcc cgacgaacgc accgacgatt
      601 catgccggta ctcgcgcaac atggcgatat ccgcgaacac ttcccgttcg cggcgcacgc
      661 ccatgctgat ctccttgccg ttttcctcgg tgaagatccg cacggaaccg gccttgatga
      721 cgaacagtcc atctgcagtg tcacccgcat tgcacacggt ctcgccgaaa gcatgaaaac
      781 gcgtctccgc ctgctcggcg agctgttcga tttcctgcgc ggtaaacggc gacaggatct
      841 ccacggtcgc gagaaaagca gtcagggaat cgagtttctg cggtacgtcc atgtgctcgc
      901 ctcctgttgt ccgccgcgcc ctagcgcgct tcgataatgt gttcctgcgc ccgcgcctgc
      961 agccattgct cgcgcaacaa ccggcgaatt tcggacgcga cgtccgcatc gagcacggcc
     1021 ggacgtttcg ccgtcaccgc aaagatttcg taggcggtgc cgtcgggtgt ggggaacggt
     1081 ccgagcaggt cgccggctgc ggcattgaac accttggctt cgatctcggc ggcgagcgac
     1141 ccgcgcaaca ccttgccaag cgcgccaccc tggtcgcggg tatcggcaat cgaatgttct
     1201 cgcgccatct ccgtaaagct gtcgggatcg tcctgcaaat aggagatcat ttccttcgcc
     1261 tgactcggtg tttcgagcac gatatgacta atctcaacgc tgtcgaaacg cggtgaattc
     1321 agcttgaaaa aagcctccac atcggtctcg ccaccgatct gttccagcat cttctcctga
     1381 tagagcgtgt ccgtgatgaa cgtctcgaac tcgtcgaggt tgacgccgag cgcatcgaga
     1441 taacggttca tatcggcggc gcggtgcagg ccgcgcacgc gcctgaactg atcggcacgc
     1501 acctggatct cgccttcgga cacgtcgatg cgctgcttct tagccgcgtg cacggtgagc
     1561 ttgtcgcgca cgagttgctc cacgagtccc tcgaactgcc cggtcagttt caacacccgg
     1621 atgaactcat cggcatcgac gacttcatcg tctattcgca caatcgccgt catttcttat
     1681 gccccttttt aaacgtgaat agcagtcgat tggggatcgc caccgttacc ccgccacctg
     1741 ccggaacggg tcaagaccga gatctatcag gcgccgctca cggaccacga tctccgcggt
     1801 cgccgtcatg ccgtagcgca acgggtagcg cgtatccgct acctggtagt agtcgcgagc
     1861 gagcgtcacg cgtccttcat agactggctg ttttgtctcg ggcgacggtt tcgtcgcggg
     1921 cgagatgaac tcgagcgtgc cgtcgaccac cccgtagcgc tgatacggaa acgcattgaa
     1981 cttgagcttg accgcctgcc cctcgcgcag gaacgcgcgg tcatgttcgg ctatctcgat
     2041 cttcagcacc ggccgtgcgt ccttgggtgc aatgccccct agcggcgtgt tcgcctggat
     2101 cttgtcgccg ggttgggttg atgtcacatc cgtgatgaca cccgacaccg gcgccaggat
     2161 cagcaggaag ttatccttat cgatattctc gaagcggata cggtccgccg cttcggcgac
     2221 gagcctcgcg gtttgcaatt gcagccgcag cttgtcgccc gcgctcgcga tttcccgcat
     2281 ggccgactcg tattgcagct tcaggctggt cgcttcctgg ccgctggttt caagctgcgc
     2341 tttcgcctgc gagtattcgt ggctgaggcg gaaatcgagt tcggtgagtt tcgactgggc
     2401 gatccgggtc gcgttatccg cttccatgta agcgttgcgt ttgctctcca cctggatctc
     2461 cgacaccccg ccaccgcccg gcaatgccag cagccgcgcg tagcggtcga gctcctgctt
     2521 cgccgcgtca cgcgtgcgac gggcgctatc cagctcggtg cgcgcctcat cgacttgcgc
     2581 tttctgtccc tcagccagct tggtcgttcc ttcggccacg cgcgtctggt gcaaatgctc
     2641 ttccacttcc atctggtcct tcagcgccgc cgccttgcgt tccatcagca gctttttttc
     2701 gggaaactct ttccagtcgc gctcggcgtc atcgagtttc aactgagctt ccagcgcgtt
     2761 ggtggcggcc tggatcgcgc cccttgcgtt aagccgcgcc accacgtcgt ccttcgaaac
     2821 cggctgccct tccgcgatat aaacatcggc cagctcgccg tcaataggtg catagaagcg
     2881 ccgtacttcg gactcgggcg aaagcgtgcc ttgcgccgtg acgatcacgt ctgcgcggcc
     2941 gatgaacgac catacgagcg cgctcacgac cagcgcgacc attgcgtaga tgagcgcctg
     3001 ggtcagccgc gccggttcag ccacgagaat ggagatgccc tccacgctgt gatcgcccag
     3061 cgattcggcg aatgatttag ggtgcgcgtc gttcttcacc gttcgctccc ttgtaggagg
     3121 ttttatcccc gccgatcagc gccagcttgg cgctcagaag ccctgggtcc agcacggaac
     3181 tcaactgaat cagcgagcgc cgctgcaagt cgacttccgc gtttatttcg gcgagcagtt
     3241 tgtcagcaag cgcactgcga tccgccttca gctggcgaag aagctgcgcg gcgcgttgcg
     3301 cgccggacca cgcgtcggtg agcagtttcg cctgcttttt gaagccgtct gacaggccgg
     3361 tctcaagccg ctggtcaccg ccgatcgcgc cgttcgtccg atactgcgcc cacgccgtct
     3421 gcgcccggtt gagccattcg tccgctcgcg ccaacgcctt ctgcctgagc gcactgagat
     3481 ccgtctggat cgcgttaacg aaccagacat ccgcaacggg atcgagcgat tcgtaaaacg
     3541 acagtacccg gtcgtcgtag ccctgcgcgc cgcgcgactt ttgcaggtcc gcgaattggc
     3601 tggccaccgc ctgcttgtgc gcgagctcgg cgctgacggc gtcggcccat ggtccgcctg
     3661 ccatcgatcg aagccccgtc atggccggct ccgtctgccc attgcgccac gcatccgata
     3721 ccgccacgta gcgcttcacg acatcaggcg taggcaggcc cttcgcatcg agctgatgct
     3781 gcgccgccag aaacggtggc gtagtaaaac gcgctttctg catggcgtcg atcagcggac
     3841 cgagctcgcg cgactggagg gcgtgctcga gcgcgaggta tggcaggagg tcgtcctgca
     3901 cgcggtcgag gcctgccagg cgcgggtatt tgtcggcgta atcggctatt tcagcactta
     3961 acgcgtcagg gtcgccgccc ggcgccagcg ccttgtcaat actcgccttg aggcgctcga
     4021 tagctgccag ataaactgag tcgtcgctct cgagcttacg cagatgactg agcgcaacgg
     4081 cgtacagatc cctgaacgcc ggtaccgtcg acgcaatccg gtccagccgc cgctgatgac
     4141 cgctcgggtc gctctcccat tgcttcagca actcgctgat gcggttctca tcggcgtaga
     4201 tgcggatggg agcatccggc ctctcgcggc tcgccatgaa cgtttcaagc cgtccaaccc
     4261 agtcgatctc attgacgagt aagcgcgcgt cggcgttggt cgcgccaagc gtcttcatct
     4321 gcgagacgac cgagcgcgcg gcatcgaaat tccgatgttt cagttggtcg agccagtccg
     4381 gcagatatcc cttgagcagc gcctccgtac ccagggccat cgcctgggga tcgtttggat
     4441 gcttgtccag gtaagcattc acgaccggta cggcctggcg ataatcgccg tgagcgacca
     4501 ggctcctcag gttccgctca gccgtactgc tgaaataaag cgcgctgccg atcgcgatca
     4561 ttgctgcgac gaatgccagg ccgcataaaa gcacccggcg cttcattgcc tgaccgccgc
     4621 cgaatgccac gccaaggtcg gagacaaagc gcacggacct gttgcgagag cggcggcgtg
     4681 ccgggacacg ttcgtcgggc aaggactccc ggttgatttc atcgtcggac ggttggttct
     4741 ggtcgacgca gaagatatcc aggaaggaat gcgcggtcgt gatgaaggtg gtcttgtcca
     4801 gatcgtccgg cgcaacctga accgctgcgc cggttacggt cgccgtcgcg gtggcggcgg
     4861 tcgtggttac acccgattcc gcttcgcgcc ggacactgac gatgtacgtg aagtggttgc
     4921 cgccgaacgc aagcgatgca ccatcttgca gcggcacagc ggtttcaccc acccgcttgc
     4981 cgtcgacgaa tgtgccgttc gtgctgccga ggtcttcgac gaacggctgg ccggctttca
     5041 cgaaaatatg cgcgtgacgt cgcgacacat agttaacctg atgaggatag cggtcgctgt
     5101 actgcgcgaa cgtctcgtcc gctttgctga tcagga
//
LOCUS       DATGBK010000321         2202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_27235, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000321 DATGBK010000000
VERSION     DATGBK010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27235"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..593
                     /locus_tag="VKJ77_04775"
     CDS             <1..593
                     /locus_tag="VKJ77_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018425038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HMC44623.1"
                     /translation="ALSNDRREPDLDVREAANAAAKRAIGERAAQLVPDGASVIIDSG
                     STTQAVARALGDRHRLMVYTNDWRIALLLGRRNDNKVTLFGGELSDNEDAVFGLDTVQ
                     QLSQYHVDFAFVGAGAITPEGFLTDYSRLAAEVRSRMILAASAAAIVADNSKFGNVTP
                     VRIRDFEKARYLITEVAPDKAMRRAIAARGPELVIA"
     gene            complement(625..1740)
                     /locus_tag="VKJ77_04780"
     CDS             complement(625..1740)
                     /locus_tag="VKJ77_04780"
                     /EC_number="2.6.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047304 - 2-aminoethylphosphonate-pyruvate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0019700 - organic phosphonate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate--pyruvate transaminase"
                     /protein_id="HMC44624.1"
                     /translation="MINGSDPILLTPGPLTTSPATRQAMLRDWGSWDAAFNRMTSDIC
                     RDLLAIVSGQKDFVCVPMQGSGTFSVEAALGSLVPRDAVVLVPNNGAYCTRLLKILER
                     LGVASVELKFRDDEPANVARIEEMFRREPRITHVAQVHLETSAGLLNPLDDIAALCKQ
                     HGKSLIVDAMSSFGALPIDVSKGGIDAVISASGKCLEGVPGMGFVIVRRTLLEASAGN
                     SRSLALDLHDQYAYMVKTTQWRFTPPTHVVAALRAALDQFIAEGGQPARGARYRSNCA
                     ALIDGMASLGFKPFLDAAVQAPVIVTFHAPNDSAYDFKRFYEAVRDAGYVLYPGKLTE
                     VETFRVGCIGAIDANEIYNAVAAIGRALGTLHVRLAA"
BASE COUNT          426 a          706 c          657 g          413 t
ORIGIN      
        1 gcgcgctgtc caatgatcgc cgcgagccgg acctcgacgt gcgcgaagcc gcgaacgcag
       61 ccgccaagcg tgcgatcggc gagcgtgccg cacaactggt gcccgacggc gcgtcggtga
      121 tcatcgactc gggcagcacg acgcaagccg tcgcgcgggc gctgggcgac cggcaccgct
      181 tgatggtcta caccaacgac tggcgcatcg cgctgctgct cggccgccgc aacgacaaca
      241 aagtcacgct gtttggcggc gaactctcgg acaacgagga cgcggtattc gggctggaca
      301 ccgtgcagca actttcgcaa tatcacgtgg acttcgcgtt tgtgggcgcg ggcgcgatca
      361 cgcccgaagg cttcctgacc gactactcgc gcctcgccgc cgaagtgcgc agccgcatga
      421 tcctggcggc gagcgcggcg gctatcgtcg cggacaactc gaagttcggc aacgtcacgc
      481 ccgtgcgtat tcgcgacttc gagaaggcgc gttacctgat caccgaagtc gcgccagaca
      541 aggccatgcg ccgcgcgatt gccgcgcgcg ggccggagct ggtgatcgcc tgagggcggg
      601 gttgcccttg ccgtcacgct gatctcaagc tgccagtcgc acatgcagcg tgcctagcgc
      661 ccgcccgatg gccgctaccg cgttatatat ttcgttcgcg tcaattgcgc cgatgcagcc
      721 cacgcggaac gtctccactt ccgtcagctt gcccggatag agcacataac ccgcatcgcg
      781 gacggcttca taaaagcgct tgaaatcgta ggctgaatcg ttcggagcat ggaacgttac
      841 gattaccggg gcctgcaccg cggcatccag gaacggcttg aaacccagcg acgccatgcc
      901 gtcgatcaac gccgcgcaat tgcttcgata ccgcgcgcca cgcgccggct gaccgccttc
      961 cgcgatgaac tgatcaagcg ccgcgcgcag cgcggcgacc acatgcgtag gcggtgtaaa
     1021 gcgccattgc gtggtcttca ccatgtacgc atattgatcg tggaggtcga gcgcgagcga
     1081 gcgcgagtta cccgccgatg cttccagcaa cgtgcgccgc acgatcacga agcccatccc
     1141 cggcacgcct tcgagacact tgccgctggc ggaaatcacc gcatcgatac cgcccttcga
     1201 tacatcgata ggcaacgcgc cgaacgaact cattgcatcg acgatcaggc tcttgccgtg
     1261 ttgcttgcac agcgctgcga tgtcgtcgag cggattcagc aaaccagcgc tcgtctccag
     1321 atgtacctgc gccacgtgcg tgatgcgcgg ctcgcggcga aacatttcct cgatccgcgc
     1381 gacgttggcc ggctcgtcat cgcgaaactt cagctcgacc gacgccacgc ccagccgctc
     1441 cagtattttc agcaagcgtg tgcaatacgc gccgttgttc ggcacgagca ccactgcgtc
     1501 gcgcggcacg agcgagccaa gcgcggcttc cacggaaaac gtgccgctgc cttgcatggg
     1561 gacgcacaca aaatcttttt ggccggacac gatcgcaagc agatcgcggc aaatatcgct
     1621 tgtcatccgg ttgaaagccg cgtcccagga accccagtcg cgcagcatcg cctgacgggt
     1681 ggcaggcgat gtggtcagtg ggccaggggt cagcaaaatc gggtcacttc cgttgatcac
     1741 gttttcctcc attcatggca gcaagcgccg cttcgacggt cgggtcgacg ctttgcatcg
     1801 ttcggcagac atgaaatagt ctacgtcgga attttggcga aatgtgttct tttttggaaa
     1861 aatgtggcat cgtcatggcg ttgtcatgaa gttctgtgat gcttcgttcg ggcaataggc
     1921 ggactgaaat tcgggctgcc gcgccaatga atcatcggac gcatcggatc taaaagaatc
     1981 cagccgatgc ttggaaaaac gtgttctacc ctcacgccac ctggttgtat ccgccttccc
     2041 ggagaaacaa gcaccatgac aaaaaatcgc tttcccgctt cctgtttcgt cgcacagcgc
     2101 gtattgccag cgctggccgt ggcggctttc gcgagcgttg tgaccgtgcc ggcctttgct
     2161 gccgatgcag tcgtgctgta cagcgccgac ggtctggaaa ac
//
LOCUS       DATGBK010000322         1663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_96388, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000322 DATGBK010000000
VERSION     DATGBK010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96388"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..1064)
                     /locus_tag="VKJ77_04785"
     CDS             complement(3..1064)
                     /locus_tag="VKJ77_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007734670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HMC44625.1"
                     /translation="MSVRYNAAFTALLAAALFGATTPLAKTLLGTMSPFMVAGLFYLG
                     SGVGLAVAIAFQRVRRSKNERANESRIQLAEVPWLLGAISAGGIAGPVLLMVGLSTTP
                     AATSSLLLNLEGIFTAVIAWVVFRENVDAQIFLGMVAIVAGGVALSWQPGAAGVSTGA
                     LLVGAACVCWAIDNNLTRKVSTNDAMVIACLKGLIAGSVNLCIALVLGAHLPGLGRTA
                     AAMFTGLAGYGVSLVLFVVALRNLGTARTGAYFSVAPLFGVTLSLILWPEMPGPLFWV
                     AAALMVLGVWLHIRERHEHAHTHVLMDHNHRHRHDEHHQHAHDFKWDGDEPHTHPHQH
                     VPMTHTHGHFPDIHHRHIH"
     gene            complement(1319..1648)
                     /locus_tag="VKJ77_04790"
     CDS             complement(1319..1648)
                     /locus_tag="VKJ77_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013094705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-binding protein"
                     /protein_id="HMC44626.1"
                     /translation="MGVAVTVFAVQRSAVADDMAGMKMSPGAMSPAASSKSALTDAEI
                     RKVDLASGMVTLKHGALENVGMPPMTMAFKARDAAMLKQAHEGDKVKVRVENVGGTMT
                     IVTMQKQ"
BASE COUNT          360 a          521 c          465 g          317 t
ORIGIN      
        1 gctcagtgaa tgtggcgatg gtgaatatcc gggaaatgtc catgggtgtg cgtcattggc
       61 acgtgttggt gcggatgggt gtgcggctca tctccatccc atttgaaatc gtgggcatgt
      121 tgatgatgct cgtcatgacg atgacggtga ttgtggtcca tcaacacgtg cgtatgcgcg
      181 tgctcgtggc gctcacgaat atgcagccac acgccgagca ccatcaatgc ggcggccacc
      241 caaaacagcg gccccggcat ttccggccac aggatcagcg aaagcgtcac gccgaatagg
      301 ggcgcaactg aaaagtacgc gccggtgcgc gcagtgccga ggttgcgcaa cgcgacaacg
      361 aacaggacca gactgacgcc gtatccagcc aagccggtga acatggccgc tgccgtcctg
      421 cccaaaccgg gaagatgcgc gccgagcaca agcgcaatgc aaagattcac cgatccggcg
      481 atcagcccct tcaagcaggc aatgaccatg gcgtcattcg tcgatacttt gcgcgtcagg
      541 ttgttatcga tcgcccagca cacacacgcg gcgccgacca gcagcgcgcc ggtggataca
      601 ccggccgcgc ccggctgcca tgagagcgcc acgccgccgg cgacgattgc caccatgccg
      661 agaaaaatct gcgcatctac attctcacga aacacgaccc acgcgatcac cgccgtgaat
      721 atgccttcaa gattcagcaa tagcgaactc gtcgcagccg gcgtggtgct caggccgacc
      781 atcagcagca ccgggcccgc gataccgccg gcggaaattg cgccgagcaa ccagggcact
      841 tcagccaact gaatccggct ttcgttggcg cgctcatttt tggaccgtct gacgcgctgg
      901 aaggcgatag cgacagccag gccaacacca ctgcctaaat agaacaagcc cgcgaccata
      961 aacggcgaca tcgtgccaag aagggtcttg gcaagcgggg tcgtcgcacc gaagagcgcg
     1021 gccgcgagaa gcgccgtgaa cgcagcgttg tagcgtacag acatggatgt tcctggctct
     1081 gaatttaact acgattctaa agaagcttat ggagttctgt ccgcatggtt ctcgcgcggt
     1141 aatgtcctgg cgccaagatc ttgtgcacgg gcaagaccat cagatctttg tgtcactttg
     1201 ccagttgtga tcgacagacc ccgcttaacc agcgcgacct gtcgacatca ggacccgcaa
     1261 ccgcgcgctt gcggccatcc cgaaccgttt gtacgcggca acgtcctctg tcctcagttt
     1321 attgcttttg cattgtcacg atagtcatcg tgccccccac gttctcaacg cgcactttca
     1381 ctttatcccc ttcgtgagcc tgcttgagca tcgcagcgtc ccgggctttg aacgccatgg
     1441 tcatcggcgg cataccgacg ttttcgagcg caccgtgttt gagcgtcacc atgccggacg
     1501 ccagatctac cttccggatt tccgcgtcgg tcaaagcgga tttcgacgac gctgccggac
     1561 tcattgcacc gggactcatt ttcattccgg ccatgtcgtc ggcgaccgcg gaccgctgaa
     1621 cagcaaatac agtgaccgca acacccattg cgaacgcgac gta
//
LOCUS       DATGBK010000323         1562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_142838, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000323 DATGBK010000000
VERSION     DATGBK010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142838"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..496
                     /locus_tag="VKJ77_04795"
     CDS             47..496
                     /locus_tag="VKJ77_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC44627.1"
                     /translation="MARSRKSTPPLECVVSDLTLAVGQLLRQLRSANPGDLNLSQSSV
                     LARLERDGPMTTADLARAELMKPQSMKTILAGLEEEACVEREPHPTDGRQILFAITRK
                     GLNERKRRTATKRDWLLAKLEQFDPQDVATLAAAIPLIKRLGDSSLP"
     gene            534..842
                     /locus_tag="VKJ77_04800"
     CDS             534..842
                     /locus_tag="VKJ77_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011882398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapA family protein"
                     /protein_id="HMC44628.1"
                     /translation="MSFVAIFFAGAFLCNAMPHLTAGLRGEMFPSPFSKPHGKGPSSP
                     LVNFLWGMLNASIGLALLVHYPFAPGVNVDSAAMLVGVLVMGVFSSVHFGRVRREGLF
                     "
     gene            839..>1562
                     /locus_tag="VKJ77_04805"
     CDS             839..>1562
                     /locus_tag="VKJ77_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44629.1"
                     /translation="MSAAQRDRLDPLVWRITTVAVLGSLLAQLDATIVNVSLSGLAHE
                     LHATLPAIQWVTSGYLLALTLVLPLNGWLVDRIGGRALYLWCFSSFTLSSLLCGFAWS
                     ADALVGFRLLQGASGGLLAPMAQLMMKRAAGNQFTRVAGYATVPILLGPLLGPVIAGL
                     ILRYASWRWLFFVNLPVGVLALVLSVLFLPDDRKYLQPREMDWLGLMLLSPGLAMILF
                     GAERIRQHTGIVAMVAGVVLFVV"
BASE COUNT          241 a          461 c          487 g          373 t
ORIGIN      
        1 gacagtttaa cttgcaagtt aaactgtctt aatttaggat tcacgcatgg cccgctctcg
       61 taaatccact ccgccgctcg aatgcgtcgt ctccgacctg acgctggcag ttggccagct
      121 tttgcgccag ctgcgcagcg ctaatcccgg cgacctgaac ctgtcgcagt ccagcgtgct
      181 cgcgcggctg gagcgagacg gtccgatgac caccgcggat ctcgcgcgcg ccgaactgat
      241 gaagccgcag tcaatgaaaa ccatcctcgc gggcctcgaa gaagaggcgt gcgtcgagcg
      301 cgaaccgcat cccacagacg gccgtcagat cctgttcgcg atcacgcgca aggggctaaa
      361 tgaacgcaag cggcgcacgg cgaccaaacg cgactggctg ctggcgaagc tcgaacagtt
      421 cgatccgcag gacgtcgcga cgcttgctgc ggccattccg ctcatcaagc gcctcggcga
      481 ttccagtctt ccatagcctt tgcggcttct ccaactttct cgaaggatga accatgagtt
      541 tcgttgcgat cttcttcgca ggtgcctttt tatgtaacgc gatgccgcat ctcaccgcgg
      601 gtctgcgcgg tgagatgttc ccgtcccctt tctcgaaacc acatggcaaa gggccgtcgt
      661 cgccgctggt caattttctg tgggggatgc tgaacgcatc gatcggtctg gcgctgctcg
      721 ttcactatcc gttcgcgccc ggcgtgaacg tcgatagcgc ggcgatgctc gtcggcgtgc
      781 ttgtcatggg tgttttctca tcggttcatt tcggtcgtgt gcgtcgcgaa gggctgtttt
      841 gagcgcggca caacgcgatc ggctggatcc actggtctgg agaattacga ccgtcgccgt
      901 actcggctcg ctgcttgcac agcttgatgc gactatcgtc aacgtatcgc tgtccggtct
      961 cgcgcacgaa ctccatgcca cgttgcctgc gattcagtgg gtgacgagcg ggtatctgct
     1021 cgcgctgacg ctggtattgc cgctcaacgg ctggctggtc gaccggatcg gcggcagggc
     1081 gctctacttg tggtgcttct cgtcgttcac gcttagttcg ctgctgtgcg gctttgcatg
     1141 gtcggctgat gcgctggttg gcttccgtct gttgcagggc gcgagtggcg gtctgctcgc
     1201 accgatggcg cagttaatga tgaagcgcgc ggcaggtaac cagtttacac gcgtggctgg
     1261 ctatgcaacc gtgccgatcc tgctcgggcc gttgctcggt ccggtgattg caggccttat
     1321 tcttcgctat gcgtcgtggc gctggctgtt tttcgtcaac ttgccggtgg gcgtgctggc
     1381 gctggtgttg tcggtgctgt tcctgcccga cgatcgtaaa tatcttcagc cgcgggagat
     1441 ggattggctc ggactcatgc tgctgtcgcc cggactcgcg atgatattgt tcggcgcaga
     1501 gcgcatccgg cagcacacgg ggatcgtcgc gatggttgcg ggcgtcgtgt tgttcgtcgt
     1561 gt
//
LOCUS       DATGBK010000324         1500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_165876, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000324 DATGBK010000000
VERSION     DATGBK010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165876"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..385)
                     /locus_tag="VKJ77_04810"
     CDS             complement(<1..385)
                     /locus_tag="VKJ77_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChbG/HpnK family deacetylase"
                     /protein_id="HMC44630.1"
                     /translation="MIRPQATARPARRALIVNADDFGLHTRVNDAVERAHRNGVLTSA
                     SLMVAGDAAADAVERARRLPTLRVGLHIVLADGRASSPRSDIPQLVDDQGRFGNAMVR
                     DGVRFFFLPGVRAQLAHEIRAQFEAF"
     gene            complement(382..1500)
                     /gene="hpnJ"
                     /locus_tag="VKJ77_04815"
                     /pseudo
     CDS             complement(382..1500)
                     /gene="hpnJ"
                     /locus_tag="VKJ77_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181785.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hopanoid biosynthesis associated radical SAM
                     protein HpnJ"
BASE COUNT          298 a          451 c          433 g          318 t
ORIGIN      
        1 caaaagcctc gaactgcgcg cgaatttcgt gggcgagctg ggcccgtacg ccgggaagaa
       61 agaaaaagcg cacgccgtcg cgcaccatcg cgttgccgaa acggccctgg tcatcgacta
      121 gctgtggaat gtcgctacgc ggcgaactcg cccggccgtc cgccagcacg atatgcaaac
      181 ccacgcgcaa ggtcggcagg cgccgcgcgc gctcgacggc atccgcagcg gcgtcgcccg
      241 ctaccatcag gctggcagag gtcagcacgc cgttgcgatg ggcacgctcg accgcgtcgt
      301 tcacgcgcgt gtgcagcccg aaatcgtccg cgttcacaat caatgcgcgc cgtgccggac
      361 gggccgttgc ttgcggtcgg atcatgcttg gtgcgcgcgc aggaaatgga aaaactcgac
      421 gccttcgcgc aagcgccgtt tcatcatttc ccagctcgtc agcatttcgc gcacgatctc
      481 ccagatcttc gatggccgga aatagaactg tttgtagaac ctttccaacc cgtgatagat
      541 ctcttcacgc gacaaatgcg gatagccgat agccgccagt tgcacacctt ccgcactgac
      601 caggttgatg accttgtttt cttccagcca gccgttgtcg accgcttgct tgtagagcgt
      661 ggtacccgga taggggcggc gagcgacacc tggatggtat gcggattgat ttccttcgca
      721 taccgaatgg tattttcgat tgtctcgcgc gtttcgccgg gcaggcccag gataaaggtg
      781 ccgtgaacct tgatgccgag cttgtggcaa tcaacgctga agcgccgcgc catgtccgtg
      841 cgcagtcctt tcttgatgtt cagcaggatc tggtcgtcgc ccgattcgta gcctaccagc
      901 agcagccgca ggccgttctc cttcatgatc ttgagcgttg aatacggcac gttggccttc
      961 gcgttgcagg accacgtgac gccaagcttg cccagtcccc gtgcaatctc ttccacacgc
     1021 ggcttgaagt cggtgaaggt gtcgtcatcg aacatgatct ccttgacttc aggcatgttg
     1081 tcgcgaatcc acttcacttc ttccagcacg ttttccacgg aacgggtgcg ataacggtga
     1141 cctcctaccg tctggggcca caggcagaag gtgcagcgtg agcggcaacc gcggcccgta
     1201 tagatcgaca cataagggtg tgacaggtag ccgatgaaat aattgtcgat cttcagatcg
     1261 cgcttgtaga ccggtgcgac aaagggcaac gcatccatgt cctcgagaat gggacgtgct
     1321 tcgttgtgtt cgatcgagcc gtcggcaagc cggtagctca gacccttgat ccgcacgaag
     1381 ggtttgcctt cggatacttc caggcaggtg aagtcgaatt cttcgcggca gacgaaatcg
     1441 attgcatcgc ttgccagcag tgaattgagc ggatctacag cgactttcgc tcccaccatg
//
LOCUS       DATGBK010000325         1663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_281713, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000325 DATGBK010000000
VERSION     DATGBK010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281713"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..400)
                     /locus_tag="VKJ77_04820"
     CDS             complement(<1..400)
                     /locus_tag="VKJ77_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HMC44631.1"
                     /translation="MTNDASLPGAASAQSLQDSDNPLGVAGLEFVEFSSPDPARLRTL
                     FEQLGFTQVARHVSKDVTLFRQGSMNFLINADNDSFAARFAVNHGVGICAIGLRVFDA
                     QTSHERAIEFGAWDFEGERVGPNELLIPAIQ"
     gene            complement(601..>1663)
                     /locus_tag="VKJ77_04825"
     CDS             complement(601..>1663)
                     /locus_tag="VKJ77_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC44632.1"
                     /translation="FHPPAAPAHTGFQFLEFAVDPAGGPTLAQWLERLGFRAAGRHRS
                     KNVTLYAQGDACILLNGETDSFASAFHQAHGLSVCASAYRVDNAAQAFERAAAFGYAP
                     FSGKVGPNERVVPSVQAPDNSLQYFVDEAPGEPTLYETDFNLADTGKQDRADILHRID
                     HVCLNLPADALDTWVLFFKATFGFDAEPSVLLPDPYGLVRSRAVRSRDGSVRIVLNAS
                     ADRHTAVVESLSTYRGSGLNHVAFATDDIFAAVEELRERGVPLLHIPRNYYDDLEARY
                     DLDPAQLAQMREGGILYDRDNAGGEFFQVYTEQFAERFFLEVVQRKGTYDGYGAVNAP
                     VRLAAHAQRRNQERPAGAA"
BASE COUNT          323 a          541 c          505 g          294 t
ORIGIN      
        1 cctggatcgc gggtatcaac aattcattcg gcccgacgcg ctccccctcg aaatcccacg
       61 ccccgaattc gatggcacgc tcgtgcgacg tctgtgcatc gaacactctt agcccgatcg
      121 cgcagatgcc caccccgtga tttaccgcga accgcgccgc aaacgaatcg ttgtccgcgt
      181 tgatgagaaa attcatgctg ccctggcgga acagcgtgac gtccttgctg acatggcgcg
      241 ccacttgcgt aaagccaagt tgctcgaaaa gcgtccgcaa ccgcgccggg tccgggctcg
      301 aaaattccac gaattcaagc ccggcgacgc ccagcggatt gtcgctgtcc tgcagggatt
      361 gcgccgaggc agcgccaggc agggaagcat cgttggtcat cgaaaatcac ctctgagaaa
      421 gtccggtccg tctgtgtctg tgcacccgtg cgtcagtcgt cttggcccgc ttggcagccc
      481 gcttgccgcg tatccgcgct gacgcggaga cagattatcg tctctggcat caaagcgtca
      541 aactgtccgg tactgtctca tgcctgcagg gcgtccgcca ggccgcagac cgcagctccg
      601 tcacgccgcc ccggccggcc gctcctgatt gcgtcgctgt gcgtgcgctg cgagccgaac
      661 cggcgcattc accgcaccat aaccgtcgta ggtgcccttg cgttgcacga cctccaggaa
      721 aaaccgctcc gcgaattgtt ccgtatagac ctggaaaaac tcgccgcccg cgttgtcgcg
      781 gtcatacagg atgccgcctt cacgcatttg ggcgagctgg gccgggtcga gatcgtagcg
      841 cgcctcgaga tcgtcgtaat agttgcgcgg aatgtgcagg agcggcacgc cccgctcgcg
      901 cagctcctcg acggccgcga aaatgtcgtc ggtcgcgaac gcaacgtgat tcagcccgga
      961 acctcggtag gtcgacagcg actccaccac ggccgtatgc cggtccgctg acgcgttgag
     1021 cacgatccgc acggaaccgt cgcggctacg caccgcgcgg cttctgacaa ggccgtacgg
     1081 gtccggtaac aggaccgacg gctctgcatc gaaaccaaat gtcgccttga aaaaaagcac
     1141 ccacgtatcc agcgcgtcgg cgggcaagtt caggcataca tggtcgatgc ggtgcaggat
     1201 atcggctcga tcctgcttgc ctgtatcggc caggttgaaa tcggtctcat agagcgtggg
     1261 ctcgcccggc gcctcgtcaa cgaaatattg caagctgtta tcgggtgcct gcacgctcgg
     1321 caccacgcgc tcgttggggc cgaccttgcc cgaaaaaggc gcgtagccaa aagcggctgc
     1381 gcgctcgaag gcttgcgcgg cgttatcaac acgatacgct gacgcacaga ccgacaagcc
     1441 atgcgcctga tgaaacgcgc tcgcgaagga atcggtttcg ccgttcagga gaatgcacgc
     1501 gtcgccctgc gcgtacagcg tgacattctt cgaacgatgc cggccagccg cgcgaaagcc
     1561 caggcgttcg agccattggg caagcgtcgg accgcctgcc ggatcgacgg cgaattcgag
     1621 gaactgaaag ccggtgtgcg cgggtgcggc gggcggatgg aac
//
LOCUS       DATGBK010000326         1860 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_327782, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000326 DATGBK010000000
VERSION     DATGBK010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327782"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(91..1215)
                     /gene="pqqE"
                     /locus_tag="VKJ77_04830"
     CDS             complement(91..1215)
                     /gene="pqqE"
                     /locus_tag="VKJ77_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011880605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018149 - peptide cross-linking [Evidence
                     IEA];
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein
                     PqqE"
                     /protein_id="HMC44633.1"
                     /translation="MNTDSIRPSQPLWLLAELTYRCPLHCAFCYNPTDFAHDATELDT
                     HAWLDVISQARKMGAAQIGFSGGEPLLRDDLETLVAHARGIGFYTNLITSGVGLTETR
                     IAGLKEAGLDHIQLSFQDSTRELNDFVSSTRTFDLKQRVARLIKQHGYPMVLNCVLHR
                     YNQPHVAQIIEMALEMEADYLELANTQYYGWAMLNREQLMPTSEQLREAEATVNQYRE
                     RLGNRCRILFVVPDYFEERPKACMNGWGSVFLGIAPDGTALPCHAARSLPGLELPHVR
                     DASLAHIWYESAAFNAFRGDSWMREPCRTCDERAVDHGGCRCQAYLLTGDAAAADPVC
                     SKSPDHDKIEQVVMLARRPARDENVQPLIFRSRENSLRIG"
     gene            complement(1217..1498)
                     /gene="pqqD"
                     /locus_tag="VKJ77_04835"
     CDS             complement(1217..1498)
                     /gene="pqqD"
                     /locus_tag="VKJ77_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006751646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis peptide
                     chaperone PqqD"
                     /protein_id="HMC44634.1"
                     /translation="MSSLNAGTDDHARPHLRLMFRLQWETTQDAYVLLYPEGMVKLNP
                     SAGEILARCDGTRKLDDIIDELEDLFGASDLAADVYRFIDHARQRGWLD"
     gene            complement(1495..>1860)
                     /locus_tag="VKJ77_04840"
     CDS             complement(1495..>1860)
                     /locus_tag="VKJ77_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011547064.1"
                     /note="Required in the synthesis of PPQ, but its exact
                     function is unknown; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein C"
                     /protein_id="HMC44635.1"
                     /translation="LWSLDHVLPGVRFAVDAYVNFARRAPWQEAVCSSLTEMFAPQIH
                     RDRLAGWPSFYPWIDTDGLQYFRSRIPLAQRDVEHGLDVTLGYFRTPEAQLRALDILN
                     FKLDILWSMLDAIEKAYPV"
BASE COUNT          385 a          535 c          567 g          373 t
ORIGIN      
        1 aacgcggttc agccgtgcct tggcctcgca tcgtggctat tcgcgcttcg cttcctcagg
       61 acgcacgccg aaagtcggcg gcggtcgcca ctatccaatg cgcagtgagt tttcccggct
      121 gcggaaaatc agcggttgca cattttcatc acgcgccgga cggcgtgcga gcatcacgac
      181 ctgttcgatc ttgtcgtgat ctggtgattt cgagcaaacc ggatcggctg ctgcagcgtc
      241 gcctgtcagc agatacgcct ggcagcggca gccgccatga tcaaccgcgc gttcgtcgca
      301 ggtccggcat ggctcacgca tccaactgtc accgcgaaag gcattgaatg cggcgctctc
      361 gtaccagata tgagccagtg acgcgtcacg tacatgtggc aattcaagac ccggcagcga
      421 gcgcgctgcg tgacacggca gcgcggttcc atccggtgca atgccgagaa atacggagcc
      481 ccagccgttc atgcatgctt taggacgctc ctcgaaataa tcgggcacca cgaacagaat
      541 tcggcagcga ttgcccaggc gctcgcggta ttgattgaca gtcgcctcgg cttcacgcag
      601 ttgctcgctc gtcggcatca gctgctcgcg attgagcatc gcccagccgt aatattgggt
      661 gttggcgagt tccaggtagt cggcttccat ctcgagtgcc atctcgatga tttgcgcgac
      721 gtgcggctgg ttatagcgat gcagcacgca gttcaacacc atcgggtagc cgtgttgctt
      781 gatcaggcgg gcgacgcgtt gcttcaggtc gaacgttcgg gtgctggaga caaaatcatt
      841 cagctcgcgc gtagagtctt gaaacgacag ctggatatgg tcaagaccgg cttccttcag
      901 accagcaatc cgcgtctcgg tcagtccgac gccagaggtg atcaggttgg tatagaagcc
      961 gattccccgt gcatgggcca ccagcgtttc gaggtcatcg cgcaacaatg gttcgccgcc
     1021 tgagaagcca atttgcgcgg cacccatctt gcgcgcctgg ctgatcacgt cgagccaggc
     1081 gtgggtgtcg agttcggtgg catcgtgagc aaaatcggtc gggttatagc agaacgcgca
     1141 atgcagcggg cagcgatagg tcagttcggc gagcaaccat aaaggctggg aagggcggat
     1201 gctatcggta ttcatatcag tcgagccagc cacgttgacg tgcatgatcg atgaaacggt
     1261 agacatcggc ggctagatcc gatgcgccga acagatcctc cagttcatcg atgatgtcgt
     1321 ccagtttgcg tgtcccatcg cagcgcgcga gaatttcacc tgcgctcgga ttgagtttga
     1381 ccatgccttc cggatagaga agcacgtagg catcctgtgt agtttcccac tgcaaccgga
     1441 acatcagccg caaatggggg cgggcatggt cgtcagtgcc ggcgttcagg gagctcatac
     1501 cggataggcc ttttcgattg catcgagcat cgaccacagg atgtcgagct tgaagttgag
     1561 gatatcgagc gcacgcagtt gtgcttccgg cgtgcggaag tagcccagcg tgacgtcgag
     1621 cccgtgctcg acatcgcgct gggcaagcgg aatgcggctg cgaaaatact gcagcccatc
     1681 ggtatcgatc cacgggtaaa acgaaggcca cccggccagg cggtcgcggt gaatctgcgg
     1741 agcaaacatc tctgtgagcg atgaacacac ggcttcctgc cacggcgcac gccgtgcgaa
     1801 gttcacgtaa gcatcgaccg cgaagcgcac gcctggcagc acgtggtcaa gcgaccacaa
//
LOCUS       DATGBK010000327         2534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_142881, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000327 DATGBK010000000
VERSION     DATGBK010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142881"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(130..861)
                     /locus_tag="VKJ77_04845"
     CDS             complement(130..861)
                     /locus_tag="VKJ77_04845"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC44636.1"
                     /translation="MQFRVALPRPCTIFSQDVPTTMLPEVLESAPILRASLYGEVVAR
                     LRDLIIHGEMAPGERISERLLCERFAISRTPLRESLKVLAAEGLVELLPHRGARVAEF
                     RSEDVVHLFEMMGALEALSGELAAGRMTELELSELTAVHNRMTVAYAQRDLPTYFDCN
                     QEIHERIVAAARNPVLRDSYTTLSGRIRRARYVANMSDERWAAAMQEHEAMIVALRAR
                     DAAGMSEILRQHLRNKCEAVVNAFP"
     gene            895..2124
                     /locus_tag="VKJ77_04850"
     CDS             895..2124
                     /locus_tag="VKJ77_04850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013742650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HMC44637.1"
                     /translation="MYRSGQHFLQIPGPTNVHERILRAMDRKTIDHRGPDFANLGHEV
                     LDGIKTIFKTEEPVVIFPSSGTGAWEAALVNTLSPGDRVLMFETGQFATQWRTLAAKL
                     GLEIEFVAGDWRNGADPQLVEEMLTEDSAHRIKAVCIVHNETSTGVVSRVSEIRAAID
                     RARHPALFFVDVISSLASMDYRHDEWGVDVTVGGSQKGLMQPPGLSFNAISHKALAES
                     THAKMPKSYWDWSDMIAANRNGYFPYTPATNMLYGLRESIAMLHEEGLDNVFSRHERH
                     AMATRLAAKSWGLELVCLDPQEYSSSITALYAPDGIDADALRATILDCFDMSLGTGLG
                     RFKGKVFRIGHLGDFNDLMLAGTLSGVQMGLDVCGVPHGDGVSAALKYLARRAHTTPV
                     VSPAAVAPARAGAFVTA"
     gene            2155..>2534
                     /locus_tag="VKJ77_04855"
     CDS             2155..>2534
                     /locus_tag="VKJ77_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HMC44638.1"
                     /translation="MEATRPLQRTKLADDLRARVSGDVRFDRLSRGLYATDASIYQIQ
                     PIGVVIPRDERDIDAVIDVCGAAGVPVLARGGGTSQCGQTVGEAVVVDTSVYLRDILA
                     LDIEGRTATVRPGLVLANLNRQLR"
BASE COUNT          479 a          764 c          790 g          501 t
ORIGIN      
        1 gtaaatggta cgatgtactc gacgtctggc ggccgtgggc cgatgatcta cgcggccacg
       61 caatcgacgc cgggcatttt ttgcccgaag aaaacgcgga tgcgacctac gccgcgctgc
      121 acgcgttcct tacggaaagg cgttaacgac cgcttcgcac ttattgcgaa gatgctgccg
      181 cagaatctcc gacatgcccg cagcgtcgcg cgcacgcagt gcaacgatca tggcctcatg
      241 ttcttgcatg gcggccgccc agcgctcgtc ggacatgttc gcgacgtatc gcgcgcgccg
      301 aatgcgaccg gaaagcgtgg tgtaggaatc ccgcaagacg ggattgcgcg cagcggccac
      361 gatgcgttcg tggatttcct gattgcaatc gaagtacgtg ggcagatcgc gctgtgcgta
      421 cgcgaccgtc atgcgattgt ggaccgccgt cagctcgctc agctcaagtt cggtcatccg
      481 cccggcggca agctccccgg aaagcgcttc gagcgccccc atcatctcga acagatgcac
      541 gacgtcctcg gagcggaatt cggccactcg ggcaccccga tgcgggagca gctcgacgag
      601 cccttcggcc gcgagcactt tgagggattc ccgcagtggc gtgcgcgaga tcgcgaaccg
      661 ttcgcagagc agccgttcgg aaatccgctc gccgggcgcc atctcaccgt gaatgatcag
      721 gtcgcgtagg cgcgccacga cttcgccata taacgaagcg cgtaggatcg gggcggactc
      781 taggacctca ggcaacatcg tcgtaggtac gtcctgtgag aaaatcgtgc atgggcgagg
      841 gagggctacc cgaaattgca ttcaatatgc aatcttaaca cgatggaggt gaccatgtat
      901 cgcagcggcc agcatttcct tcagattccc ggcccgacga acgtccacga gcgcatcttg
      961 cgcgcgatgg atcggaagac catcgatcat cgtggaccgg actttgcgaa cctcggtcac
     1021 gaggtgctcg acggcatcaa gacgatcttc aaaaccgaag agcccgtcgt catttttccg
     1081 tcgtcgggaa ccggcgcgtg ggaagccgcc ctcgttaata cgctcagccc gggcgaccgc
     1141 gtgctgatgt tcgagacggg ccaatttgcg acccaatggc gcaccctggc tgcgaagctc
     1201 ggtcttgaga ttgaattcgt tgcgggcgac tggcgcaatg gcgcggatcc ccagctagtt
     1261 gaagagatgc tgaccgagga ttcggcccat cgcatcaagg ccgtctgcat cgttcataat
     1321 gaaacgtcca ccggcgtggt ctcgcgggta tcggagattc gcgcggcgat agaccgcgcg
     1381 cgtcatcccg cgctgttttt tgtcgacgtg atctcgtcgc ttgcttcgat ggattaccgc
     1441 cacgacgaat ggggcgtcga cgttacggtc ggcggctcgc aaaagggttt gatgcagccg
     1501 cccggattga gtttcaacgc aatttcgcac aaggcgcttg ccgagtcgac gcacgcgaag
     1561 atgcccaagt cgtattggga ttggagcgat atgatcgccg ccaatcgtaa cggctacttc
     1621 ccctatacgc cggcgaccaa catgctgtac ggtctgcgcg aatcgatcgc gatgctgcat
     1681 gaagaagggc tcgacaacgt gttttcgcgt cacgagcgcc atgccatggc cacgcgcctt
     1741 gcggcaaagt cgtggggcct ggagcttgtt tgcttggacc cgcaagaata ttcgtcatcg
     1801 attaccgcac tatacgcgcc ggacggaatc gatgccgatg cgttgcgtgc gactattctc
     1861 gactgtttcg atatgtcgct gggtacggga ctcggccgct ttaagggtaa agtattccgc
     1921 attggacacc tcggcgattt caacgacctt atgctggcgg gaacgcttag cggcgtccaa
     1981 atgggactcg atgtatgcgg agttccccat ggcgacggag tttcggctgc gctcaaatat
     2041 ctcgcgcgcc gcgcacacac gacgcccgtc gtttcaccgg ccgcggttgc gcctgcgcgc
     2101 gccggagcgt tcgtcacggc ctagtctctc gttgttgcag cgcgccgcgt gacgatggaa
     2161 gccacgcgtc cgctgcagcg gacgaaactc gcggatgacc tgcgcgcacg cgttagcggc
     2221 gacgtgcggt tcgatcgctt gtcccgcggc ttgtacgcga cggacgcatc gatctatcag
     2281 atccagccga tcggcgttgt cattccgcgc gacgaacgcg atatcgatgc ggttatcgac
     2341 gtgtgcggcg cggccggcgt tcccgtgctg gcacgtggcg gcgggacgtc gcaatgcggg
     2401 caaaccgtcg gcgaagccgt ggtcgtcgat acgagcgttt acttgcgcga tattcttgcg
     2461 ctcgacatcg aggggcgcac ggcgaccgtt cggcccggcc tcgtcctagc gaacctgaat
     2521 cggcaactta ggaa
//
LOCUS       DATGBK010000328         1832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_142884, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000328 DATGBK010000000
VERSION     DATGBK010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142884"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..1829)
                     /gene="msbA"
                     /locus_tag="VKJ77_04860"
     CDS             complement(108..1829)
                     /gene="msbA"
                     /locus_tag="VKJ77_04860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014896445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005319 - lipid transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006869 - lipid transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A export permease/ATP-binding protein
                     MsbA"
                     /protein_id="HMC44639.1"
                     /translation="MMSRLWPYIRPLIWIVALGLIAMGFVAASEAGIPMLLKPLLDHG
                     FGAKGSSDAKWIVPAAVVGLAVVRGGAQYASGYLLSYVTNKILLQLRLKMFDRMIHTS
                     AGFFQRETASTIINAIVFEVNQILNVLQSVVVTLVRDSLTVVFLLGYLFILNWRLTLV
                     IAVILPAIGWLVSKINRRLRRLNRESQLLTNELSYIVEETVGGYKVVKVHNGQRYEND
                     RFTEMSNRLRGYQMRMTVSGGLAQPLTQFLASIALAIVITIAVVQSANDQTTVGGFVA
                     FVTSMLLVISPLKHLIDINQPLQRGMTAAELIFGLIDEPVEPEGGGRPLERASGEVEF
                     REVSFSYGTTGTPTLDAISFKIAPGEMVALAGASGSGKTTLVNLLPRFFDPASGAVLV
                     DGVPLTEYSLHDLRGQMAMVSQDVVLFNDTIAANVAYGQTPDRERVMAALAAANLADV
                     VAAMPEGVDTRVGGNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQ
                     EALETLMKGRTTLVIAHRLSTIERADRILVMDAGKIAEHGSHAELLRHNGLYANLHRI
                     QYQQQAA"
BASE COUNT          368 a          592 c          552 g          320 t
ORIGIN      
        1 ccacaggttg cactgaaatg catccgccgc acaggacact ccccaaaaca aaaacgcgcc
       61 cctagccgtt ccgaccaggg gcgcgcatcg actaaaaacg aaacgcttca ggctgcctgc
      121 tgctgatact ggattcgatg aaggttcgcg tacagcccgt tgtgccgcag caactcggcg
      181 tggctgccgt gctccgcgat tttcccggca tccatcacca gaatccggtc agcacgttca
      241 atggtcgaaa ggcggtgggc aatcaccagc gtcgtgcgcc ccttcatcag cgtttccaag
      301 gcttcctgaa cgtgccgttc ggactcggaa tcgagtgcgg acgtggcttc atcgaggata
      361 agaataggcg cgtccttgta gatcgcccga gcgatagcca accgctgccg ctgcccaccc
      421 gacaaacgca tgccgttgcc gcccacgcgc gtgtccacgc cctcgggcat tgccgcgacg
      481 acatcggcaa gattcgcggc ggcaagcgcc gccatcaccc gctcgcgatc cggggtctgg
      541 ccgtaggcga cgttggcggc gatcgtgtcg ttgaagagca ccacgtcctg gctcaccatc
      601 gccatttgtc cgcgcaaatc gtgcaggctg tactcggtga gcggcacgcc gtcaaccagc
      661 acggcaccgc tggcgggatc gaagaaacgc ggcaacaggt tgaccagcgt ggtcttgccg
      721 ctacccgacg cacccgctag cgccaccatt tcgccgggag cgatcttgaa cgagatggca
      781 tcgagcgttg gcgtcccggt agttccataa ctgaaggaca cctcgcggaa ctccacctcg
      841 ccgctggcgc gctcgagcgg ccggccgccg ccttcgggct cgacgggttc gtctatcaga
      901 ccaaaaatca gttccgccgc cgtcatgccg cgctgcagcg gctggttgat atcgatcagg
      961 tgcttgagcg gcgagatcac cagcagcatg gacgtgacga acgccacgaa cccgccgacg
     1021 gtcgtctggt cgttcgccga ctgcaccacg gcaatggtga tcacgatcgc gagtgcaatt
     1081 gatgccagga actgcgtaag tggctgcgcg aggccgccgg acaccgtcat gcgcatctgg
     1141 taaccgcgca ggcgattgct catttcggtg aaacggtcgt tttcgtagcg ctggccgttg
     1201 tgaaccttga cgaccttgta accgccgacg gtctcttcca cgatgtacga cagttcgttc
     1261 gtcagcaact gcgactcgcg attgagccgc cggagccgtc gattgatctt gctcaccagc
     1321 cagccgatag ccggcaggat caccgcgatc accagcgtca ggcgccagtt gaggatgaac
     1381 aggtagccga gcagaaatac gacggtcagc gaatcgcgca cgagcgtgac gaccacgctc
     1441 tggagcacgt tgaggatctg gttcacctcg aacacgatgg cgttgatgat cgtgctcgct
     1501 gtttcgcgct ggaagaaacc ggcgctggtg tgaatcatcc ggtcgaacat cttcaggcgc
     1561 agctgcagca ggatcttgtt cgtgacatag gagagcaagt agccggacgc gtattgcgcg
     1621 ccgccccgca cgaccgcgag ccccaccacg gcggccggca cgatccactt ggcgtccgag
     1681 ctgcctttcg cgccaaagcc gtgatcaagc aacggcttga gcagcatggg aatgcccgcc
     1741 tcgctcgcgg cgacgaaacc catggcgata aggccgagcg caacaatcca gatcagggga
     1801 cggatgtacg gccagagccg gctcatcacg gc
//
LOCUS       DATGBK010000329         1872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_304692, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000329 DATGBK010000000
VERSION     DATGBK010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304692"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1103
                     /locus_tag="VKJ77_04865"
     CDS             <1..1103
                     /locus_tag="VKJ77_04865"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HMC44640.1"
                     /translation="TACAFFMFAGTAGLHGAVAATTSYDVGDQSIVRLFVRSATVTIK
                     TWERNTVAIEWTDGDPIVPFKGTQLVASATVPILAQQVREFLTAAGPVNVTLPPEDFP
                     ISGFALGLHDIVRVQEVPPPAGIDRAPTELSHVTLTVPASTRVLELRVGRGDVTLSDY
                     HGTTIAFTNAQTTVNFVRVGGDAFVQPLNGHFYAVDSNFNRLRVRSNHADLVFERCHI
                     REVEATSLTGNIVYDNGTFETGLAHFESDRGNVALGISSPATVSGHTQDGHVFSMQNG
                     RAPASNTNDASATFGTAGPSVSATSTHGNVFFYDGSIADRRPLTLVAPWRSVYAALMS
                     KRRATVGNAAMPKPPPALSPAGRPIDRRPRLR"
     gene            1206..>1872
                     /locus_tag="VKJ77_04870"
     CDS             1206..>1872
                     /locus_tag="VKJ77_04870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44641.1"
                     /translation="MFLLAQLGWPATAGAAASSFDVGDQALVQIVLPEADLSIKTWDR
                     NTVKVEGADADAVLATHGTSAIPLISRIPALTVVEGSSRADAVAATLQPEDFPIGVSA
                     PGQHDVIRVGPAAAQTAATAPPRVTITIPASTRMLFVRVAHGLLALNDYHGTSMIYTA
                     NAVVTLAHVGGDAFVQANNGTVRTNDSNFNVLRARTNRAELIFERCHVRQIDATTLTG
                     AIVY"
BASE COUNT          351 a          595 c          566 g          360 t
ORIGIN      
        1 ttacggcctg cgcttttttc atgtttgccg ggacggctgg gcttcatggc gcggtagcgg
       61 cgactacatc ctacgatgtc ggcgatcaat ccatcgttcg gctttttgta cgttcggcca
      121 cggttaccat caagacgtgg gaacggaaca ccgttgcgat cgagtggacg gacggcgacc
      181 cgatcgttcc ttttaaggga acgcaacttg tcgcgagcgc gaccgttccg attctcgcgc
      241 aacaagtgcg cgagtttctc accgcggcgg gccccgtaaa tgtgacgctg ccgcccgaag
      301 attttccaat ttcgggcttt gcacttggat tgcacgacat cgtgcgcgtc caagaggttc
      361 ccccgccggc cggtatcgac cgtgcgccca cggaactctc gcacgtcacg ttgacggtgc
      421 cggcatccac gcgcgtgctt gaactccgtg ttgggcgcgg tgacgtcacc ttgagtgatt
      481 atcatgggac gacgatcgcg tttacgaacg cgcagacgac ggtcaatttc gtgcgtgtcg
      541 gcggtgatgc gttcgtacag ccgctcaacg gacattttta cgccgtcgac tccaatttca
      601 accggctacg cgtgcgcagt aatcacgccg atctggtgtt cgagcgctgc cacatcagag
      661 aagtcgaagc aacatcacta accggaaaca tcgtctacga taacggtacg ttcgagaccg
      721 ggctggccca tttcgagtcg gatcgcggca acgtcgcact ggggataagc agcccggcca
      781 ccgtcagcgg acacacgcaa gatgggcacg tgttctcgat gcaaaacgga cgcgcgccgg
      841 caagcaatac aaacgacgcg agcgcgacct tcggcacggc cggaccaagc gtcagcgcga
      901 ccagtacgca cggcaatgtg tttttttacg acggttcgat tgcggatagg cgtccgctca
      961 cgctcgtggc gccgtggcga tccgtctacg ctgctctcat gagcaagcgg cgcgcaacgg
     1021 tcggcaacgc tgccatgccc aagccgccgc ccgccctaag ccccgccggg cggcccatcg
     1081 atcggcgccc gcggctgcgc taagaactgt caccgaatcc caatgcccgg cgcgcgtgtg
     1141 gggactatca tcggattgtg caccgccccc gttccgctgc cttgcgatcc gtcgcggcga
     1201 gcgtcgtgtt tcttctggcc cagttgggct ggcccgcaac cgcgggcgcg gcggcatcct
     1261 cgtttgacgt cggcgaccaa gcgctcgttc aaatcgtgct tcccgaggcg gacctttcga
     1321 taaaaacctg ggaccgaaat acggtcaaag ttgagggcgc ggatgccgat gcggtgctcg
     1381 cgacgcacgg aacgtcggcc atcccgttga tctctcgaat tccagcgcta accgtcgtcg
     1441 aaggcagcag ccgagccgac gccgtggccg cgaccttaca gcccgaagat tttccgatcg
     1501 gtgtttccgc gcccggacag cacgacgtga tacgcgtcgg ccccgccgcc gcgcagacgg
     1561 ctgcgaccgc gccgccacgg gtcacgatca ccatcccggc gtcgacgcgc atgttgttcg
     1621 tgcgcgtggc gcacgggctg ctggccttaa atgattatca tggcacgagc atgatctaca
     1681 ccgccaatgc ggtagtaacg ctcgcgcacg ttggcggcga tgcattcgtg caagccaaca
     1741 acggaacagt gagaacgaac gattcgaatt tcaacgtgtt gcgcgcgcgt acgaatcgcg
     1801 cggaactcat cttcgagcgc tgccacgttc gtcagatcga tgcgacgaca ttgaccggtg
     1861 cgatcgtgta cg
//
LOCUS       DATGBK010000330         2460 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_27437, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000330 DATGBK010000000
VERSION     DATGBK010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27437"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..608)
                     /locus_tag="VKJ77_04875"
     CDS             complement(144..608)
                     /locus_tag="VKJ77_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006157208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4126 domain-containing protein"
                     /protein_id="HMC44642.1"
                     /translation="MSLYLLALLIGVVAGLRAMTAPAAVSWASHLGWLPVQHTPLAFL
                     GATVTPYILTLLAIGELITDQLPKTPSRKVPMQFGARLVTGAVSGAALGAAAGSMIGG
                     AVAGLIGAVIGTLGGASVRGALARAMGRDLPAALIEDVVAVGGAVLIVIAFA"
     gene            complement(1059..>2460)
                     /locus_tag="VKJ77_04880"
     CDS             complement(1059..>2460)
                     /locus_tag="VKJ77_04880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC44643.1"
                     /translation="SGPDSSDTARSLVGEIDRVEMLYGPVANDIVALALAGKHDEAIV
                     KMDNECRPLLASLVKATDAYADFTRNRQEQLVRDSEDQYQMQRNLLIAICVAAIAMAL
                     AAGVVITRSITLPIRRAVDVASTVARGDLRSRIVVTQNDETGQLLGALADMNARLIET
                     VSRVRESSGSIVSASSEIATGNTDLSQRTEEQAASLEETAASMEELTSTVKQNTENAQ
                     QASALATSASDVAQRGNKVVRQVVDTMHGISESSAKIAEITGIIEGIAFQTNILALNA
                     AVEAARAGEQGRGFAVVASEVRSLAQRSSSAAKEIKDLIANSVLQVQNGSALASQAGE
                     TMSEVTQAVARVTDIMEEIAAASIEQGRGIEQVNQAITQMDEVTQQNAALVEEAAAAS
                     QSLQDQGRQLTEAVAFFQMEGATVASRPGVKLAVKPAVRAAALPVTKRAVKRSAAVLV
                     APLKTASAGEAGWSTF"
BASE COUNT          495 a          822 c          693 g          450 t
ORIGIN      
        1 ctggcagaaa tgctggccac ttacttctcg ataccgaagc ggcaccaata ctgacgccgc
       61 gctgaatgta cgctgaattc acgctgaaac tgcgccgatg ccgacgtcga cgccgctcac
      121 accggcagca cccagaagga agctcaagca aacgcgatga cgatcaacac tgcgccaccg
      181 accgctacta cgtcttctat cagcgccgcc ggcaaatcgc gccccattgc gcgagccagt
      241 gcaccgcgga cgctcgcgcc acccagcgtg ccgatgactg cgccgatcag ccccgccacc
      301 gcgccgccga tcatcgagcc cgccgccgca cccagcgcgg cgccactcac cgcgccggtc
      361 acaagtcgtg cgccgaactg catgggtacc ttgcggctag gggttttcgg gagttggtcg
      421 gtgattagtt cgccaatggc aagcaaggtc aggatataag gcgtgacggt cgcgccaagg
      481 aacgccagcg gcgtgtgctg gacgggcagc cagccaagat gcgacgccca gcttacggca
      541 gcgggagcgg tcatcgcgcg gaggccggcg acaacgccaa tcaacagggc aagaagatat
      601 aaggacatcg acggctccgg ttcctggtgc attcgggatg agcgcgctgc tggggtgcac
      661 gcgctcatcc cgacaggaat accgcaaatc cccggcatta gaaagggata aagacacatc
      721 gatacagcga gcgagcggct ggcaggcagg caagaccggg gcagtaccgg tcatgttcgt
      781 ggggcgtttg acactacaga tagatgaaag caccggacaa gcgaacgttt aaatgccagc
      841 gtatcgatac aaagaataca gcgcgacgag accaacccaa aaaaatagtc attcggataa
      901 cgaagcataa tttgatcgac agcgtcacac ggacttaagg atataacgcg atcagcattt
      961 aaaggcgcag ccaaaagaag aacacataga cacccgttaa aagcagcgcg accttcgtcg
     1021 cgccgcttca ttcacctgcc ggacagtgac acagtgcgtc agaacgtgct ccagcccgcc
     1081 tcgccagcac ttgccgtttt aagcggtgca accagcacgg cggccgagcg tttaacagct
     1141 cgtttggtga ccggcaaagc ggcagcgcga accgccggct taaccgccaa cttaacccct
     1201 ggacgtgacg cgaccgtcgc gccctccatc tggaagaacg ccacggcctc ggtcaactgc
     1261 cggccctgat cctgcagtga ctgggatgcc gccgccgctt cttccaccag cgctgcgttc
     1321 tgctgagtga cttcgtccat ctgcgtgatg gcctggttca cctgttctat gcctcgcccc
     1381 tgctcaatcg atgccgccgc aatttcctcc atgatgtcag tcactcgcgc gaccgcctgg
     1441 gtcacctccg acatcgtttc gccggcctgg ctggcaagcg ccgagccgtt ctggacctgc
     1501 agcacagagt tcgcaatcag gtctttgatc tccttggccg cactcgacga ccgttgcgcg
     1561 agactgcgca cttcgctcgc gaccactgcg aaaccgcggc cctgctcccc ggcccgtgcc
     1621 gcttcaaccg ccgcgttcaa cgccaggata ttggtctgga acgcaatccc ttcaataatc
     1681 cccgtgatct cggcaatctt cgccgagctt tcactgatgc catgcatggt atcgaccacc
     1741 tgccggacca ccttgttgcc acgctgggca acatccgaag cgcttgtcgc cagcgcgctg
     1801 gcctgctgcg cgttttcggt gttctgcttg accgtcgatg tcagttcttc catgctcgcc
     1861 gccgtttcct ccagcgacgc ggcctgttcc tccgtgcgct ggctgaggtc ggtgttaccc
     1921 gtcgcaatct ccgacgacgc actcacgatg ctgccgctgc tttcacgcac gcggctcaca
     1981 gtttcgatca gcctcgcgtt catgtcggcg agcgcaccga gcaactggcc ggtctcatcg
     2041 ttctgcgtga ccacgatgcg gctacgaaga tcgccgcgtg ccaccgtgct ggcgacgtcg
     2101 acggcacgcc ggatcggcag cgtgatcgag cgcgtgatga ccacgcccgc cgccagtgcc
     2161 atggcgatcg cggccacgca aatggcgatc agcaggtttc gctgcatctg atactgatct
     2221 tcagagtcgc gcaccaactg ttcctgacgg ttgcgcgtga aatcggcgta ggcatccgtc
     2281 gccttcacga gcgaagccag cagcggccgg cattcgttat ccatcttgac gatggcctca
     2341 tcgtgcttgc cggccagcgc aagcgccaca atgtcgttgg caaccggccc gtacaacatc
     2401 tccacgcgat cgatttcacc taccagactg cgtgcggtgt cgctgctgtc gggtccgctc
//
LOCUS       DATGBK010000331         1837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_212167, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000331 DATGBK010000000
VERSION     DATGBK010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212167"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(119..1276)
                     /locus_tag="VKJ77_04885"
     CDS             complement(119..1276)
                     /locus_tag="VKJ77_04885"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HMC44644.1"
                     /translation="MTPLTPLTIRGRTLLPIVQGGMGVGVSAHRLAGAVAREGAMGTI
                     SSIDLRHHHPDLLEMCKQNPDQATLEAANQTALRREIIAAKALSEGHGMIAVNVMRAV
                     SSYAAAVQTACDSGADAIVMGAGLPLDLPDLTQGVDIALIPILSDSRGIALVLKKWLK
                     KNRLPDAIVIEHPGHAGGHLGVASVADIPSERFDFARVIEETMLTFDALGISRTQIPL
                     IVAGGIDGHAAVRRWLAAGASGVQLGTAFAVTEEGDAHPEFKRILADATPEDIVEFVS
                     VTGLPARAVKTPWLDRYMRNEQRIRDKIGARAQKCPTGLNCLVACGLRDGIEKFGHFC
                     IDTRLAAALRGDRANGLFFRGREALPFGSAIRSVRELLDLLVADIRPTAAA"
     gene            complement(1499..>1837)
                     /locus_tag="VKJ77_04890"
     CDS             complement(1499..>1837)
                     /locus_tag="VKJ77_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006485248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC44645.1"
                     /translation="GTLGRLLFNADDIKKSVKVLSGGEKGRMIWGKLMLGRPNVLLMD
                     EPTNHMDMESIESLQIALEKYEGTLIFVSHDREFVNGLANRIIEVKNDGTLRDFGGTY
                     EELLASQGIQ"
BASE COUNT          357 a          592 c          508 g          380 t
ORIGIN      
        1 cggacaacac ataatttctg tgccacgtaa cgcctgactt gtggagggct ttcgaccggc
       61 ttgtggctga ctcgacacgt acctcaacca tcagcctggt ttgcgaaact cgcgccgttc
      121 aagctgccgc cgtgggccgg atatctgcga ccagcaagtc gagcaattca cgcacgctgc
      181 gaatggccga tccaaacggc agcgcctcgc gcccccggaa gaacagtccg ttcgcgcgat
      241 ctccacgcag ggccgcggcc agacgggtat cgatacaaaa gtgtccgaac ttttcaatgc
      301 catcgcgcaa accacacgcc accaggcaat ttagacccgt ggggcacttt tgcgcgcgcg
      361 cgccgatctt gtcgcgaatc cgttgctcat tgcgcatgta acgatcgagc cacggtgttt
      421 tcaccgcgcg cgccggcagg ccggtcacac tcacgaattc gacgatgtct tccggcgttg
      481 catcagcaag aatccgcttg aattcgggat gcgcgtcacc ctcttcggtc accgcgaacg
      541 ccgtgccgag ttgcacgccg gacgcacctg ccgccagcca gcgacgcacc gccgcatgcc
      601 cgtcgatgcc acccgccacg atcagcggaa tctgagtgcg ggagatgccg agggcatcga
      661 aagtcagcat ggtttcttcg atcacgcggg cgaagtcaaa gcgctcgctt ggaatgtccg
      721 cgacgcttgc cacgcccaga tggcctcccg catgccccgg atgttcgatc acgatggcat
      781 cgggcaaacg attcttcttg agccacttct tcagtaccag cgcgatgcca cggctatccg
      841 acaagatcgg gatcagcgcg atatcgacgc cttgcgtcag gtccggcagg tccagcggca
      901 gccctgcccc catgacgata gcgtcggcgc cgctgtcgca cgccgtctgt accgccgccg
      961 cgtaggacga aaccgcgcgc atgacattca cggcaatcat gccgtggccc tcgctaagag
     1021 ccttcgctgc aatgatctcg cgccgcaacg ccgtctggtt ggcggcctcc agcgttgcct
     1081 gatccggatt ctgtttgcac atctcaagca agtcgggatg gtgatgccgc aagtcgatgc
     1141 tcgagattgt tcccattgca ccctcccggg ctacggcgcc ggccagccgg tgcgcggata
     1201 cacccacgcc catgcctccc tgcacaatag gaagcaaggt gcggccgcga atggtcaggg
     1261 gggtaagagg ggtcatgaaa ggatcatctc cagagtcaaa gtttttagct tgcaggaggt
     1321 tagacaaacg tgcgttgagt tttatcaagc aagttcgact gtgctgtatt tcagttttct
     1381 gaacgtgctc cgttcccaga aagcaaacgg cccgcttctt tacgaagcgg gccgtttgcg
     1441 ttgctgcttg tttctattgg ctaactgctg tgttccgcgg ggtgatacgc gcgcccagtt
     1501 actgaatacc ctggcttgct agcaattcct cgtacgtgcc gccgaagtcg cgcagcgtgc
     1561 cgtcgttctt cacttcaatt atccggttcg ccagtccatt cacgaactcg cggtcatgcg
     1621 acacgaagat cagcgtgcct tcgtatttct ccaacgcgat ctgcaaggac tcgatcgatt
     1681 ccatgtccat gtggttggtc ggctcgtcca tcaacaacac gttcgggcgc ccgagcatca
     1741 gcttgcccca gatcatacgg cccttctcac cgcccgacag caccttgacc gacttcttga
     1801 tgtcgtcggc gttgaacagc aaacggccca acgtgcc
//
LOCUS       DATGBK010000332         2955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_96541, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000332 DATGBK010000000
VERSION     DATGBK010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96541"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VKJ77_04895"
     CDS             <1..316
                     /locus_tag="VKJ77_04895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HMC44646.1"
                     /translation="GWPGVLVTSIAKFGPSSIVTVAAMHAWERFKNHPWRRYVQLGLI
                     PMTAGLVAASASLIAEASDTRWILTAITVVIASLSFKTKLHPLWLLALGSLIGLTGFG
                     QF"
     gene            576..914
                     /locus_tag="VKJ77_04900"
     CDS             576..914
                     /locus_tag="VKJ77_04900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HMC44647.1"
                     /translation="MTMTTEFALTAPSRAEIDALDGPTVIEFGTSWCGHCRAAQPLIA
                     EAFQDHASVQHLKIEDGSGRPLGRSFRIKLWPTMIFLDNGSEVARVVRPKSTSEIRDA
                     FALIDHPVSP"
     gene            1107..1913
                     /gene="otnI"
                     /locus_tag="VKJ77_04905"
     CDS             1107..1913
                     /gene="otnI"
                     /locus_tag="VKJ77_04905"
                     /EC_number="5.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-tetronate isomerase"
                     /protein_id="HMC44648.1"
                     /translation="MPRFAANLTMMYNEYAFLDRFGAAARDGFKAVEFLFPYEFPPAE
                     IKAQLVDNGLKQVLFNAPPGDWTGGERGLASLPGREEEFRRSMEIALDYAAALGNDRL
                     HVMAGLIDTKHSREQHRDVYIKNLTLAASMAKMARVTIVIEPINTRDMPGYFLNRQDE
                     AQAICEEIGVPNLQVQFDCYHCQIVEGDLAVKLRRDMKRRNAGIGHIQIAGVPYRNEP
                     DTGEVNYPYLFDLIDSLGFAGWIGCEYRPRAGTSDGLGWLTPYRHAGRAS"
     gene            2135..>2955
                     /locus_tag="VKJ77_04910"
     CDS             2135..>2955
                     /locus_tag="VKJ77_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004532453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC44649.1"
                     /translation="MQITGEMLIGATAVRGKDATLHAFDPARGVDLPPAFGGGAALEV
                     ARAADLAEQAFDTYRLAPLETRAQLLEAIADNIVALGRTLIERAHAESALPKARLEGE
                     CARTIGQLKLFASLVREGRWLSATLDSAQPERKPLPRPDLRLQKIPVGPVAVFGSSNF
                     PLAFSVAGGDTAAALAAGCPVIVKSHPAHLGTSELVGRAIQKAVADSGLPEGVFSLVV
                     GAGNAIGEALVAHPAIKSVGFTGSRRGGLALIEIASRRREPIPVFAEMSSINPFFV"
BASE COUNT          564 a          877 c          937 g          577 t
ORIGIN      
        1 cggctggccg ggcgtgctgg tgacatcgat tgcaaagttc ggcccgtcgt caatcgtgac
       61 ggtcgccgcc atgcacgctt gggaacgctt caagaatcat ccatggcggc gatatgttca
      121 actgggtctc ataccgatga cagccggcct ggtcgcggcg agcgcgtcgt tgattgccga
      181 ggcgtcggac acccgctgga tacttacggc catcacggtg gtcattgcgt ccctgtcgtt
      241 caagacgaag ctgcatccgc tgtggttgct ggcgttgggc agcctgatcg ggctgaccgg
      301 cttcgggcag ttctagaacg gtgctcgcat taatggcaaa aggccgagac cgttgcgaga
      361 ttggccttgg ggacaaggga ggtgcgggtc acgcggcgtt gccaagctac gtcacgagca
      421 tcgcggaaag tgaatttgcg gagcgccatt ggcggtgttg agaagacagc aagaactccg
      481 ttgcctcgct gtgatcgcgc aaaaaagccg cgtcgagcgc atcaacgcat tgctgaatag
      541 aatggctgga gtttcgtttt gaggggaaaa agcagatgac gatgaccact gaattcgcac
      601 ttaccgcgcc atcgcgcgct gagatcgacg cgctcgacgg gccgacggtc atcgaattcg
      661 gcacctcctg gtgcggccat tgccgcgctg cccagccact gattgcggag gccttccagg
      721 accacgccag cgtccagcat ttgaagatcg aggacgggag tggccgcccg ctcggccgct
      781 cgttcaggat caaactctgg ccaacgatga tcttcctcga caacgggagc gaggtcgcgc
      841 gggtcgtgcg ccctaaaagc acatcggaaa tccgcgacgc ttttgcgctg atcgatcatc
      901 cggtttcgcc atgacgaggg tttttaccga tcattcgggg cgcggagtcc gggaatatca
      961 tcgctgcaag ggttaagcga agggcaatga caggcactgc ggaaaccggg cgcgggagtt
     1021 gcgcaatgcg tcttgcacgc cgctccggca atgcttgccc gcgacccgtc cgcgtcggcg
     1081 ttatcccgac cagcaggagg ttcaccatgc cgcgtttcgc cgccaacctc accatgatgt
     1141 acaacgaata cgcgttcctc gaccgtttcg gcgcggcggc gcgtgatggt ttcaaggcgg
     1201 tggaattcct gtttccctat gaattcccac cggcggagat caaagcccag cttgtcgaca
     1261 atggcctgaa gcaggtgctg ttcaacgcgc ctccgggcga ctggaccggc ggtgaacgcg
     1321 gcctcgcttc gctgccggga cgcgaggaag agttcaggcg cagcatggag atagccctcg
     1381 actatgccgc ggcactcggc aacgaccggc tccatgtgat ggcaggattg attgacacga
     1441 agcactcgcg cgaacagcat cgcgatgtct atatcaagaa cctgacgctg gcggccagca
     1501 tggcgaaaat ggctcgcgtc accatcgtga tcgagccgat caatacgcgt gacatgcccg
     1561 gctatttcct gaaccggcag gacgaagcgc aagcgatttg cgaagagatt ggtgtgccga
     1621 acctgcaagt ccagttcgac tgctatcact gccagatcgt ggaaggtgat ctggccgtca
     1681 agcttcgccg cgacatgaaa cggcgcaacg cgggtatcgg ccatattcaa attgccggcg
     1741 tgccctaccg caacgagccg gatacgggcg aagtcaacta tccgtacctt ttcgatctca
     1801 tcgattcact cggttttgcc gggtggatcg gctgcgaata tcggccgcgt gcaggcacgt
     1861 ccgacggctt gggctggctc acgccgtatc gtcatgcggg ccgcgcatca tgaccacgcc
     1921 gatacggtcc gatgcgtcat gttccggcca gcagtttgct ttgacagcgg cgaagcaagc
     1981 gctggaaaca tccgcacgac gctgaagctt tccatgcggc gtgaaagtcc acggcaaaaa
     2041 acgaattcgc ttacgcctcg tgccacctgg tttttcttgt cacccacggc acctacagcg
     2101 gtcaacgata ggcgctgctt tcaggagagt tcacatgcag atcaccggag aaatgctgat
     2161 cggtgccacg gcggtgcgcg gaaaagacgc cacgctgcat gccttcgatc cggcgcgcgg
     2221 cgtcgacttg ccgccggctt ttgggggcgg cgcagcgttg gaagtcgccc gcgcggccga
     2281 ccttgccgag caggcattcg atacctaccg gctcgcgccg cttgaaacgc gcgcgcaact
     2341 cctggaagcg attgcggaca acattgtcgc gcttgggcgt acgctgatcg aacgcgcaca
     2401 tgccgaatcc gcgttgccga aagcgcgcct ggaaggcgag tgcgcccgta cgatcgggca
     2461 attgaaactg ttcgcgtcgc tcgttcgcga aggccgctgg ctttctgcca cgctcgattc
     2521 cgcgcaacct gaacgcaagc cgttgccgcg tcccgacttg cgtttgcaga agattccggt
     2581 tggaccggtt gccgtgttcg gctccagtaa ttttccgttg gcgttctcgg tagccggcgg
     2641 cgacacagcc gccgcccttg ccgcaggttg tcccgtgatc gtgaagtcac atccggcgca
     2701 tctgggcact tccgaactgg tcgggcgcgc gatccagaaa gcagtggcgg attcagggtt
     2761 gcccgaaggc gtgttctcgc tggtggtcgg agcgggcaac gcgataggcg aggcgctggt
     2821 cgcgcatccg gccatcaagt cagtcgggtt cacgggctcg cggcggggtg gccttgcgct
     2881 gatcgagatc gcatcgagga ggcgggagcc aattcccgtg tttgccgaga tgagcagcat
     2941 caatccgttc ttcgt
//
LOCUS       DATGBK010000333         1702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_189274, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000333 DATGBK010000000
VERSION     DATGBK010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189274"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1264)
                     /locus_tag="VKJ77_04915"
     CDS             complement(<1..1264)
                     /locus_tag="VKJ77_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018420512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor region1.1
                     domain-containing protein"
                     /protein_id="HMC44650.1"
                     /translation="MDESVCSPEQADERQRQMRALIQLGKQQGFLTHAEINDHLPGNF
                     AQTSAIETIVSTFRDMGVAVYEEAPDSETLLLNDSAPTAVSDEQSDEEAEVTLATVDS
                     EFGRTTDPVRMYMREMGSTELLTRAGEIEIAKRIEDGLGEMIKAAFACPSTVVTLLTT
                     VDKIVAGELRIDELVDGFKDTTLDEDAVAADADTDAELDEAELASESDDEDGETEDEQ
                     ATRANATRLKHLLRDCLPMFANVRDHFDAFHAAYTADDSRTGDWPSVQEHIQRELATI
                     RFTARTIDRLCAEVHEQVEQVRAIERRILKIAVDLAGMPREKFVEVFPGHETDLEWTT
                     RHAAGSNAYGKALERSLPAIQAEQQKLIQIESNLMLPLVQLKALNKQMTSAEHKMRQA
                     KREMTEANLRLVISIAKKYVNRGMHFLDL"
BASE COUNT          324 a          509 c          478 g          391 t
ORIGIN      
        1 tcagatccag gaaatgcatg ccgcggttca cgtacttctt cgcgatcgag atcaccagac
       61 gcagattcgc ttccgtcatt tcgcgcttcg cctgacgcat cttgtgctcg gcggacgtca
      121 tctgcttgtt cagcgccttc aattgcacca gcggcaacat caggttcgat tcgatctgga
      181 tcagcttctg ctgttccgcc tgaatcgccg gcaggctgcg ttccagcgcc ttgccataag
      241 cattcgaccc tgcagcgtga cgagtcgtcc actcgagatc cgtctcgtgg ccagggaaca
      301 cttccacgaa tttctcacgc ggcatgcctg ccagatcgac ggcgatcttc aggatgcgac
      361 gctcgatagc gcggacctgt tcgacctgct cgtggacttc ggcgcacaac cggtcgatgg
      421 tacgagcggt aaagcgaatg gttgccagct cgcgctggat atgttcctgc acgcttggcc
      481 agtcaccggt gcgcgaatcg tcggcggtat aagccgcgtg gaaagcgtca aaatggtcgc
      541 ggacattcgc gaacataggc aagcagtcac gcagcaaatg cttgaggcgc gttgcgttcg
      601 cacgcgttgc ctgctcgtct tcggtctcgc cgtcttcgtc gtcgctttcc gacgcgagtt
      661 cagcttcgtc gagttcagcg tcggtatcgg catccgccgc gaccgcgtct tcgtccagcg
      721 tggtgtcctt gaagccgtcg accagttcgt cgatgcgcag ctcgcccgcg acaatcttgt
      781 ccacggtcgt gagcagcgtc accacggtcg acgggcacgc gaatgccgcc ttgatcatct
      841 cgccgaggcc atcttcaatg cgcttcgcga tttcgatctc acccgcacgg gtcagcagtt
      901 cggtgctgcc catttcgcgc atatacatac gcacgggatc ggtcgtccgg ccgaattccg
      961 agtcgacggt cgccagcgtg acttccgctt cttcgtccga ttgctcgtcc gacaccgccg
     1021 tgggagcgga atcgttcagc agcagcgttt ccgagtcagg cgcttcttca tagacggcca
     1081 cgcccatgtc gcggaacgtg ctgacaatgg tttcgatagc cgacgtctga gcaaagttgc
     1141 ccggcaggtg atcgttgatc tccgcgtggg tcaggaaacc ttgctgtttt cccagttgaa
     1201 tcaacgcccg catctggcgt tgacgttcat cggcctgctc gggagagcaa acgctttcgt
     1261 ccattggccg cgacagcttg tcggcggacc cacggcgggc tttcgatttt tttgcaggaa
     1321 cgccgttgcc ggcggtagat tcggttggat caaaacttgt catacatttc ctcgacagct
     1381 ttgctctgta ataacaaacc agtgcacaag cggttagaca cgagcactac cgtgacgacc
     1441 gacgggatca tcacctcggg ttcagctatt cagcttattc agccaattcg atgcgttgat
     1501 tcgagcaaaa ctgaatcagt ttggaggcgg ggcgcgctaa cgagcgcagt actcgcgcgg
     1561 gtcgtacagt ctatagcaac ttggttgcgg ctagtgaggt aaacgccaat atcaggcgta
     1621 tttagtagcc gagcgcagca aaacaccaac atttagctcg gacatcgtgt catctgcgga
     1681 cgaattagct cgattcaaga cc
//
LOCUS       DATGBK010000334         2531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_327892, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000334 DATGBK010000000
VERSION     DATGBK010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327892"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..440)
                     /locus_tag="VKJ77_04920"
     CDS             complement(<1..440)
                     /locus_tag="VKJ77_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011002926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
                     /protein_id="HMC44651.1"
                     /translation="MADAPVLDAEQSRRFRAWFVLLVAQQLRQGPNARWYHRDCAGLV
                     RFAVGETWRPHDAKWRAQNGLSERRLPPELELTPAQQAAWPQRWRRIDGSVGAFATAF
                     SLVQENSVLVSRDINLAEPGDLLFFDQGDDQHLMIWMGNYIAYH"
     gene            complement(485..2239)
                     /locus_tag="VKJ77_04925"
     CDS             complement(485..2239)
                     /locus_tag="VKJ77_04925"
                     /inference="COORDINATES: protein motif:HMM:NF021432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2138 family protein"
                     /protein_id="HMC44652.1"
                     /translation="MRLPESRPLRFVLLALVALVVVVAGILGWSAWQHRQRLSAPIPA
                     ALLDIAPIRLARPDAMIVSSSLRDLPHDLLSVPLLKSVLTEDFVFYYEERDTLLGLKG
                     TLRRIAYEHQLSLGDEVIALALEQPADVALWRGPDGKLTHWLLNANRSGWAKLLELAA
                     KIAVSDTQLSQSGTLPLAGGGTTPLYKLQYTSQDALFFAGNGDKMVVFSDPGMIESGE
                     YGADADRAKVWEALLDTHWQASPLRRHFGLADFTGKHTMVAETGYLSFNYQQFFPAFE
                     ALRFDFDGQAWSSYVRVLGGAPRAALHTQDLWHHVPTAASLCTAMPLEPGKLAPILAG
                     TKDLAPLGDPKMLDGVHAPAAICWYPAGGLYSPLVVARVDAHATSDAALDALFDKSIG
                     NSLAAQAKGDDAGTGDNADAAKQGGKNAGSHVPGAAAPAGTGTSTASVDVHMQGGARI
                     WHRMVKTDFGRFDVTMAREGDWLVFSPNAQLVADTLAVFANQRPALADSLPADRSMIE
                     TVITPRTLSALLEQAALGSLPRQTEPIFREAAQNQLTPRLKAMAGFPPVALMLPESLD
                     DAQRAWQPIEWQTLSDAK"
BASE COUNT          515 a          775 c          794 g          447 t
ORIGIN      
        1 ttgtggtaag cgatgtagtt gcccatccag atcatcaaat gctgatcgtc gccctggtcg
       61 aagaacagca ggtcgccggg ctcggcaaga ttgatgtcgc gcgagaccag cacactgttt
      121 tcctgcacga gcgaaaacgc cgtggcgaac gcgccaacgc tgccgtcgat gcggcgccaa
      181 cgttgcggcc atgcggcctg ttgtgccggc gtcaactcca gttccggcgg caggcgccgt
      241 tcactcaggc cgttctgcgc gcgccatttc gcatcgtgcg gccgccatgt ctcgccgacc
      301 gcgaaacgca cgagaccggc gcagtcgcgg tgataccagc gcgcgttcgg cccttgccgt
      361 aactgttgcg caaccagtaa cacaaaccat gcacgaaagc gccgcgactg ctcggcgtcg
      421 aggaccggtg cgtcggccat cggcatcgcc atactgagca ccggccacgc gcaggccgcg
      481 ccgatcattt tgcgtcgctt agcgtttgcc attcgatcgg ttgccacgca cgttgggcat
      541 cgtccaggga ttcaggcagc atcagcgcga ccggcgggaa acccgccatc gccttgagcc
      601 gcggcgtcag ttggttttgc gcagcttcgc ggaagatcgg ttcggtctgc cgcggcagcg
      661 agccgagcgc cgcctgttcg agcaaggccg acagagtccg gggagtgatc accgtttcga
      721 tcattgagcg atcggcgggc agcgaatccg cgagcgcggg acgctggttt gcaaagactg
      781 ccagcgtatc ggcgaccaat tgcgcgttcg gcgagaacac gagccagtcg ccctcgcgcg
      841 ccatcgtcac gtcgaagcgg ccgaaatcgg tcttgaccat gcgatgccag atgcgggcac
      901 cgccctgcat atggacgtcg acgctcgcag tgctggttcc ggttccggcc ggggccgcgg
      961 cacccggaac gtggctgcct gcattcttgc cgccctgctt cgcggcatcc gcattgtcgc
     1021 cagtcccggc gtcatcaccc ttggcctgcg cggccaggct gttgccgatc gacttgtcga
     1081 acagcgcatc gagtgccgcg tcggacgtcg cgtgtgcatc gacccgggcg actacgagcg
     1141 gactatagag cccgcccgcc ggataccagc aaatggcggc cggcgcatgc acgccatcca
     1201 gcatcttcgg atcgccgagc ggcgcgaggt ccttcgtccc ggcgagtatt ggcgcgagct
     1261 tgcccggctc gagcggcatc gccgtgcaca ggcttgcagc agtgggcacg tgatgccaga
     1321 ggtcctgtgt atggagcgca gcacgcggcg caccgcccag gacccggaca tagctgctcc
     1381 aggcctgccc gtcgaaatcg aagcgcagcg cctcgaaggc cgggaaaaat tgttgatagt
     1441 tgaacgacag atagccggtc tcggccacca tcgtgtgttt tcctgtgaaa tctgcgagcc
     1501 cgaagtgccg gcgcagcggg cttgcctgcc aatgcgtgtc gagtaatgct tcccagactt
     1561 tcgcccggtc ggcatcggca ccgtactcac cgctttcgat catgccgggg tcggagaaca
     1621 ccaccatctt gtcgccgttg cctgcgaaga acagcgcgtc ctgagaggtg tactgaagtt
     1681 tgtagagcgg cgtcgtgccg ccgccggcga gcggcagcgt gcccgattgc gacaattgtg
     1741 tgtcactgac cgcgatcttt gcggcgagct caaggagctt ggcccagcca ctgcgattcg
     1801 cgttgagtag ccagtgcgtg agcttgccgt ccggaccgcg ccagagcgcg acatcggccg
     1861 gctgttcgag cgcgagcgcg atgacctcgt cgccaagcga aagctgatgt tcgtaggcga
     1921 tgcgccgcag cgtgcccttc aggccgagca acgtgtcgcg ttcttcgtag tagaaaacga
     1981 agtcctcggt tagtacggac ttgagcaacg gaaccgagag gaggtcgtgc gggaggtcgc
     2041 gcaggctgct cgacacgatc atcgcatcgg gccgcgcgag ccggatcggt gcgatatcga
     2101 gcagcgcggc gggaatcggc gcgctcagac gctggcggtg ctgccaggcc gaccagccca
     2161 gaataccggc gacaacgacg acgagcgcga caagggcgag cagtacaaac cgcaaaggcc
     2221 gggattctgg caaacgcatg ggcgatcgag aagagaggtc aagggcacgg tgaagctgcc
     2281 aaaccgcgcg agcttaacgc aaaacgtctg agctatcgta aagaaagatc aacggcacgg
     2341 caaagggcat tgtcaagttg ttgagcctga aaagaagcga ccatcgaaac aagaaaaaac
     2401 ctttgcatag atcaaatatc gaaatatcga tattttctgt taatccccga aaatcccaga
     2461 aaattatttc atcgaattaa ataaaaatca tcctttaaac agtcaaattt aacatgacaa
     2521 aacgaattcg a
//
LOCUS       DATGBK010000335         1721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_119986, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000335 DATGBK010000000
VERSION     DATGBK010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119986"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..981)
                     /locus_tag="VKJ77_04930"
     CDS             complement(<1..981)
                     /locus_tag="VKJ77_04930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HMC44653.1"
                     /translation="MTFTGKDFSGDDSQRASGFARGFARSLLHSACSAFLAANVLIVS
                     AGGFIADGAHAALPVDEIKLPPGFSIAVLSDNVPSARAMALSPKGVLYAGSLDGHIYA
                     LELKDGRVTVKHVIASGLDEPAGVTFRNGALYVSAISRILRFDDIDDHLDVPPKPVVV
                     TDKLPSDRSHGWKFIAFGPDGKLYVPTGAPCNICNPDRKRYALIARMNPDGSDYEVFA
                     NCVRNTVGFDWNPQTKELWFTDNGRDLLGDDIPDDKLNRAPKAGMDFGFPYCHGGDVA
                     DPEFGAGHPCSGFTPPVVKLGAHVASLGMRFYTGTMFPADYKNNVFIAEHG"
     gene            1208..1462
                     /gene="rpsP"
                     /locus_tag="VKJ77_04935"
     CDS             1208..1462
                     /gene="rpsP"
                     /locus_tag="VKJ77_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HMC44654.1"
                     /translation="MVIIRLARGGSKKRPFYNIVATDSRSRRDGRFIERVGFYNPVAT
                     KGESLRIAQDRLTYWQDNGAQLSPTVARLVKQSQQAQPAA"
     gene            1542..>1721
                     /locus_tag="VKJ77_04940"
     CDS             1542..>1721
                     /locus_tag="VKJ77_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HMC44655.1"
                     /translation="MSTRDSASDSGLKAARGEKPEPNEATFGAFVSKPAARRVAVDAS
                     DSAGSIEPVESLPDDA"
BASE COUNT          345 a          497 c          519 g          360 t
ORIGIN      
        1 cccgtgttcc gcgatgaaca cgttgttttt atagtcggcg gggaacattg tgcctgtata
       61 gaagcgcatg ccgagcgacg ccacgtgtgc acccagcttg accacgggcg gcgtaaatcc
      121 cgagcacgga tggccggcgc caaattcagg gtccgcaacg tcaccgccgt gacagtaggg
      181 gaaaccgaag tccatgccgg ctttcggcgc gcggttgagc ttgtcgtcgg ggatatcgtc
      241 gccaagcagg tcgcggccgt tgtcggtgaa ccagagttct ttcgtctgcg gattccagtc
      301 gaaaccgacc gtgttgcgca cacagttcgc aaacacttcg tagtcgctgc cgtccgggtt
      361 catccgggcg atcagtgcat accgtttgcg atccgggttg caaatgttgc acggcgcacc
      421 ggttggcaca tacaacttgc cgtccgggcc gaacgcgatg aatttccagc cgtgtgatcg
      481 gtcggaaggc agtttgtcag tgaccactac cggcttgggc ggcacatcga ggtgatcgtc
      541 tatgtcgtcg aaacgcagga tgcgggagat cgcggagacg taaagcgcac cgttgcggaa
      601 tgtcacgccc gcaggctcgt ccagacctga cgcgatcacg tgtttcaccg tcacgcgtcc
      661 gtctttcaac tcgagcgcgt agatatgccc gtcgaggctg ccggcgtaaa gtacgccttt
      721 aggcgacaaa gccatggcgc gggcgctcgg gacgttatcg gagagaacag cgatgctgaa
      781 tcccggcggc agcttgatct cgtcaaccgg cagcgctgcg tgggcaccgt ccgcgatgaa
      841 cccgcctgct gagacgatta gtacattcgc cgctaaaaac gcagagcacg ccgaatgcag
      901 cagagatcgg gcgaagcctc gggcaaagcc gctagcccgc tgcgaatcgt cgccagagaa
      961 atctttaccg gtgaaagtca tgagcaagtt caaatttgtc tccccaaaat gacaccccgc
     1021 gccgtcttcg cgaagtcttg aaaaacccgc tttgcgccgc gtcagggcgg gcgatggccg
     1081 gtcgaatgac acgcttccgg ccacgttcca tcttgattaa tcgacgcaag tgtttgttaa
     1141 ggctccgttt tgccgctata atcgcgtgtt ttggtagttc cgaaccccgg ttttcaagga
     1201 tttcagcatg gttatcatcc gcttggctcg tggcggctcc aagaagcgcc cgttttacaa
     1261 catcgttgca actgattcgc gtagccgccg tgatggccgc ttcatcgaac gcgtgggttt
     1321 ttacaacccg gtcgcgacca aaggcgaatc gctgcgtatc gcccaggacc gcctgacgta
     1381 ctggcaagac aacggcgcgc agttgtcgcc gacggttgca cgtctggtca agcagtcgca
     1441 acaagctcag ccggctgctt aagtgcgctt gctgcagtcg atcgctcggg tacttgtgat
     1501 ccgatcgatt tcagctgctg aggttcgcgg gagattggct catgtcgacg cgtgattcag
     1561 cttcagactc aggtttgaaa gccgcacgtg gcgaaaaacc tgagccgaac gaagccacgt
     1621 ttggcgcgtt tgtcagtaag ccggcagcgc gtcgcgtggc tgtcgacgct tcagatagcg
     1681 caggctcgat cgagcccgta gaaagtttgc ccgatgacgc c
//
LOCUS       DATGBK010000336         3024 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_212237, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000336 DATGBK010000000
VERSION     DATGBK010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3024
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212237"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1313
                     /locus_tag="VKJ77_04945"
     CDS             <1..1313
                     /locus_tag="VKJ77_04945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007741653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF748 domain-containing protein"
                     /protein_id="HMC44656.1"
                     /translation="DIVAQDKGAATTQAASAAPASAPPAAAPTAPAAPKTASSSANLR
                     FGQLVLQNGRVTYTDNFIKPNFTANLVSITGTIGAFGTHSTTPAPVDVAAKLSANGPV
                     SIKGVVNPLIAKPSLDLTASAHDVELPNISPYSTKYAGYPITKGKLNVDLHYMLADEK
                     LSANNHLFIDQLTFGDHVDNPTATHLPVRLAVSLLKNSKGQIDVNIPISGSLSDPQFS
                     IGALVWTAILHLVERAVTAPFSLIANAFGGKNPEELGYVEFDPGSATLSDAANEKLDT
                     IAKALADKPSITLEISARVDPALDEPGLRAAYVDRQVRLSKMQDASEDNPNINPSSIP
                     ISADEYSKFLTKAYKSADFKKPRNLIGMTKTVPDADMKAALAEHAPVDEGALGALAQR
                     RASVVKQYFEGKIDSKRIFIVAPHLNAEGIKDKGAPTRVDFGLK"
     gene            1707..2783
                     /locus_tag="VKJ77_04950"
     CDS             1707..2783
                     /locus_tag="VKJ77_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein/thiosulfate
                     sulfurtransferase GlpE"
                     /protein_id="HMC44657.1"
                     /translation="MLHDLADRYGPAIVFFNVMGAALGLPVPAMPTLIVVGASVAMMG
                     VNGQALLPHLALMLGIATLGGVLGDLVWFQGGRRYGDRTLKTICKLSLSRDTCVKKTE
                     RFFGRWGVRVLLVAKFIPGLSLVSVPLAGAMGVRMRSFIAHDGVGVALWAAVGLAVGV
                     IFAAELDMVFAMIAQLGKQALLVVAVALAFYVAYRYWRRKMLMKTLETARITVDELYS
                     LMANEPLPAIFDIRSAEKRVLDPFVIPGSVFADERELQKIVESYQPDQKIIIYCSCPN
                     EVSAAWMAKALRNAGFKDVVPLTGGLDAWRLAGLDLKPLTDFGGAREDLGEMAAMCPW
                     PAKAPAAGKGALHDAVYLHGDRHA"
     gene            2780..>3024
                     /locus_tag="VKJ77_04955"
     CDS             2780..>3024
                     /locus_tag="VKJ77_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019448944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44658.1"
                     /translation="MSTPLEGTNEAPSHGHSQPEWRDSPQPVSEDLNAIMNDTVTPAP
                     AQAGADAPFSPLQSRKHQMYPYLTAEEIDRMRRFGNV"
BASE COUNT          598 a          959 c          934 g          533 t
ORIGIN      
        1 gcgatatcgt ggcgcaggac aagggggcgg ccaccacgca agctgcatcc gccgcgcccg
       61 catccgcccc acccgctgcc gcacctacgg cccccgccgc gccgaaaacc gcgtcgtcat
      121 cggcgaatct gcgctttggc cagctcgtgc tgcaaaacgg ccgcgtgacc tacaccgata
      181 acttcatcaa gccgaatttc accgcgaacc tggtctcgat caccggcact atcggtgcct
      241 tcggcacgca ctcgaccacg cccgcgcccg tcgatgtcgc cgcgaaactg tccgcgaacg
      301 gaccggtatc gatcaagggg gttgtgaatc cgctgatcgc gaaaccgtcg ctggatctca
      361 ccgcgagcgc gcacgatgtc gagctgccga atatctcgcc gtactcgaca aaatatgcgg
      421 gttatccgat cacgaagggc aagctcaatg tcgatctgca ctacatgctc gccgacgaaa
      481 agctcagcgc gaacaaccat cttttcatcg atcaactgac gttcggcgat cacgtcgaca
      541 accccaccgc gacccatttg ccggtgcggc tcgcggtgtc gctgctgaag aattcgaaag
      601 gccagatcga cgtcaacatc cccatttccg gctcgctttc ggacccgcaa ttctcgatcg
      661 gcgcgctggt gtggacggca atccttcacc ttgtcgagcg cgcggtgact gcgccgttct
      721 cgctgattgc gaacgcgttc ggcggcaaga accctgaaga actcggctac gtggagttcg
      781 atccgggttc ggccacgctg agcgacgcgg cgaacgagaa actcgacacc attgcgaaag
      841 cgctggccga caaaccgtcg atcacgctgg agatatcggc tcgggtggac ccggcgctgg
      901 acgaacccgg tttgcgcgcg gcctacgtcg accggcaagt gcgcctctcg aagatgcagg
      961 acgcgagcga agacaatccg aacatcaatc cgtcgagcat cccgatttcc gccgatgaat
     1021 acagcaaatt cctcacgaaa gcgtataaaa gcgcggactt caagaaaccg cgcaacctga
     1081 tcggcatgac gaagaccgtg cccgacgccg acatgaaagc cgcgctcgcg gagcacgcgc
     1141 cggtggacga gggcgcgctc ggtgcgcttg cgcagcggcg cgcgtcggtg gtgaagcaat
     1201 atttcgaggg caagatcgac agcaagcgga tcttcatcgt cgcgccgcac ctcaacgccg
     1261 agggcatcaa ggacaagggt gcgcctacgc gggtagactt tgggctgaag tgacgacgaa
     1321 gcgacgacga agcgacgaag cgacgaagca aaaaacaagc ggattcaggc acgctttgga
     1381 cggttcgcgc cgaagaaccc ggtcccggga aaggccgcga ccatcggcat tctcgccaat
     1441 ccgcgctaca cttatttcat gaatgaggcg gcgcatcgcg gcgcgcatga cgggaacgcg
     1501 gaggggctaa gaacagccaa gcgttgtgca gcggctcgca gctcgaagct cggcctggcc
     1561 tccagccgcg ttcccggatt caccgcgctt catcgcaaag ccgtcaaacg agccatataa
     1621 agtaagcgct tcgcgcaaag cgcccacggc gttcaggctc tccacacccg aatccagcgc
     1681 tgcacaacct gcaggagaat cccatgctgt tgcatgatct ggctgaccgg tatggtccgg
     1741 caattgtatt tttcaacgtg atgggcgcgg cgctcggcct gcccgttccc gcgatgccga
     1801 cgctgatcgt ggtcggtgcg tcggtggcca tgatgggcgt caacggccag gctttgttgc
     1861 cccatctcgc gctgatgctc ggcattgcca cgcttggcgg ggtgctgggc gatctcgtct
     1921 ggttccaggg cggccggcgc tacggcgacc gcacgctcaa gaccatctgc aagctgtctt
     1981 tgtcgcgcga tacctgcgtg aaaaagaccg agcgtttttt cggccggtgg ggcgtgcggg
     2041 tgctgctcgt cgcgaaattc atcccgggtt tgtcgctggt ttcggtgccg ctcgccggtg
     2101 caatgggcgt gcgcatgcgc tcgttcatcg cgcatgacgg tgtgggcgtg gcgttatggg
     2161 ccgcggtggg actcgcggtg ggcgtgatct tcgcggccga gctcgacatg gtgttcgcca
     2221 tgatcgcgca gcttgggaag caagcgctcc tggtcgtggc ggtcgcgctg gcgttttacg
     2281 tggcctaccg ctactggcgc cggaagatgc tgatgaagac gctggaaacg gcgcgcatta
     2341 ccgtcgacga gctgtattcg ctgatggcga acgaaccgct ccccgctatc ttcgatatcc
     2401 gttccgccga aaagcgcgtg ctcgatccct tcgtgattcc aggctccgtt ttcgccgatg
     2461 aacgcgaact gcagaagatc gtggaaagtt atcagccgga tcagaagatc atcatttact
     2521 gctcgtgtcc gaacgaggta tcggcggcgt ggatggctaa agcactccgc aacgccggtt
     2581 tcaaggatgt cgtgccgctg accggcggac tggacgcatg gcgtctcgcc gggctcgacc
     2641 tcaagccgct gaccgatttc ggcggtgcgc gcgaggacct gggcgaaatg gccgccatgt
     2701 gcccgtggcc cgcaaaagcg ccggcagccg gcaaaggcgc gttgcatgac gccgtctacc
     2761 tgcatggaga tcgtcacgca tgagtactcc gctcgaaggg acgaacgaag cgcccagcca
     2821 tggccacagc cagccggaat ggcgcgacag tccgcagcct gtgtcggaag acctcaacgc
     2881 gatcatgaac gacacggtca ccccggcgcc ggcgcaagcc ggcgctgatg ctccgttctc
     2941 accgctgcaa agccgcaagc atcagatgta cccgtatctc accgccgagg aaatcgaccg
     3001 catgcggcgc ttcggcaacg tgca
//
LOCUS       DATGBK010000337         1937 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_258765, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000337 DATGBK010000000
VERSION     DATGBK010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258765"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..895)
                     /locus_tag="VKJ77_04960"
     CDS             complement(<1..895)
                     /locus_tag="VKJ77_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005436 - sodium:phosphate symporter
                     activity [Evidence IEA];
                     GO_process: GO:0044341 - sodium-dependent phosphate
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HMC44659.1"
                     /translation="MLILLNILSGVALLVWGTHIVRTGILRVFGAELRRVLGRSANSR
                     FRAFGAGLCVTSLVQSSNATAVLASSFAAQGLLPLAPGLAIMLGADVGTALMSRVLTL
                     DLSWLSPILLLGGVIAFLSFKQTRTGQVGRTVIGLGLILLALHLIVEAAQPVMQGEGV
                     KVMFGALTGDSMLDTLVGAAFAMISYSSLAAVLLTATLASSGVISLKVAVCLVIGANL
                     GSGLLAVIGTLGQNPAGRRLALGNVLFKLAGAVIVLPFAPWIAQGIGALIPYPREAVI
                     TFHLVYNMVRCVACMPLIDPVS"
     gene            1090..1773
                     /locus_tag="VKJ77_04965"
     CDS             1090..1773
                     /locus_tag="VKJ77_04965"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HMC44660.1"
                     /translation="MSRTLALFDLDHTLLPLDSDQSWARFYATLGFEGSADHAEEIDA
                     YYQQYVAGTLDMDEYLGLTLAPLARHPRAQLDAWHATFMKTVIEPAIRPEALGLLRHH
                     LDAGHLCCIVTATNAFITAPIAKALGVEHLLAIDLGTEGDDPLGRYTGRSVGVVTFRE
                     GKIVRTEQWLASQGLKLADFEASYFYSDSVNDVPLMERVTHPVATNPDAKLRVIAAER
                     NWPVIELFA"
BASE COUNT          401 a          615 c          561 g          360 t
ORIGIN      
        1 gcgagactgg atcgatcagc ggcatgcatg cgacgcaacg caccatgttg tagacgagat
       61 ggaatgtgat caccgcctcg cgcggatacg ggatcaacgc gccaatcccc tgcgcgatcc
      121 acggagcgaa cggcagtacg atcaccgcgc cggccagctt gaacagcaca ttaccgagcg
      181 cgagacgccg gccggcaggg ttttgcccca gcgtgccgat cacggccagc aggccgctgc
      241 cgaggttcgc cccgatcacg aggcacaccg cgaccttcag cgagatcacc cccgacgacg
      301 ccaaggtcgc agtcagcagg accgctgcaa gactggagta agagatcatg gcgaaggccg
      361 cgcccaccag cgtgtcgagc atggagtcgc ccgtcagcgc accgaacatg accttcacgc
      421 cctcgccctg catcacgggc tgcgcagcct ccacaatcag atgcagcgcc agcaggatca
      481 gccccagccc gatgaccgtg cgccccacct ggcctgtgcg ggtctgtttg aacgacagga
      541 atgcgatcac cccgccgagc agcaggatgg gcgacagcca cgagagatcg agcgtgagca
      601 cgcgcgacat caacgccgtg cccacgtccg cgccgagcat gatcgccagt cccggagcaa
      661 gcggcagcag gccttgcgcc gcgaacgacg aggccagcac ggcggtcgcg ttgctgctct
      721 ggaccaggct cgttacgcac aagcccgcgc cgaacgcccg gaaacgactg ttcgcactgc
      781 gtcccagcac gcgccgcaac tcagcaccga agacccgcag gatgccggtc cggacaatat
      841 gcgtgcccca taccagcaac gccacgcccg acaaaatatt caagagaatc aacatgaggc
      901 cacgtccgtt gttcgttccg actgtactgc cattcgtgca atgatgccac gcaaataagt
      961 tgtacaattt tgctttgttg tagttttggg tatttaaagc tacgatccaa tcgtgttggg
     1021 cgacctgcgc cggacggtgg tctggtgcgc tttctacccg ctttttaccg ttaatcaagg
     1081 gctatacgga tgagtcgtac tctggcgctg ttcgatctgg atcacacatt gctgccgctg
     1141 gatagcgatc agtcgtgggc acgcttctac gctacgctag gtttcgaggg cagtgcggac
     1201 catgcagaag agattgacgc gtactatcag caatacgtcg ccggcacgct cgacatggac
     1261 gagtatctgg gcctgacgct cgcaccgctc gcccgtcatc cgcgcgcgca acttgacgcg
     1321 tggcatgcga ccttcatgaa gacggtgatc gaaccagcca tccgccctga agcacttggg
     1381 ctactgcgcc atcatctcga cgcggggcac ttatgctgca tcgttaccgc caccaatgcg
     1441 ttcatcaccg cacccatcgc gaaggcgctt ggcgttgagc atttgctggc catcgacctg
     1501 ggtactgaag gcgatgatcc tctcgggcgc tataccggtc gctcggtggg cgtggtgact
     1561 ttccgtgaag gcaagattgt tcgcaccgag caatggttgg cttcccaggg attgaaactg
     1621 gcggatttcg aagcgagcta tttctatagc gattccgtca acgacgtgcc gttgatggag
     1681 cgtgtcaccc atccggttgc aacaaacccc gatgcgaaat tgcgagtgat tgcggccgag
     1741 cgcaactggc cggtcatcga gttgttcgcg taggtttctt gttcgcctgc gacgctcagg
     1801 ggccggtcta atggcccgct gataccgcgt gagcgcggtt tcccgcctat tctctaaacg
     1861 ctgcacatgg cgtagcatcc gcccattcct ctgacaaaga catataacga gacatggccc
     1921 tgatcgcacg caatctg
//
LOCUS       DATGBK010000338         2366 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_120007, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000338 DATGBK010000000
VERSION     DATGBK010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120007"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            302..2167
                     /locus_tag="VKJ77_04970"
     CDS             302..2167
                     /locus_tag="VKJ77_04970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HMC44661.1"
                     /translation="MPALIEDYALVGDGHTAALISKEGSIDWLCWPRFDSGACFAALL
                     GTPENGRWLITPDLPDGAPPPVITRRYRGDTLILETDFETPDGRVSLIDFMPVRDGAS
                     DLVRIVVGRRGTVKMKMELVLRFDYGSSIPWVSRLPDESGIRAIAGPDLCVLRTPIDL
                     TGENMRTVGEFTVSEGERVPFSLVYSQSHLRLPRALDPHTQFARTENFWLEWSGRSKL
                     DGRWGSAIRRSLITLKALAYEPTGGIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITL
                     LAMMRSGYYDEARAWRAWLGRVMAGSPDQVQIMYGIAGERRLPEWEVDWLAGYENSKP
                     VRIGNGAVNQLQLDVYGEVMNALHLARVGGLQGDETVWSIQRAMLDHLDTIWQEADEG
                     IWETRGGRQQFTFSKVMAWVAYDRAIKSAEQFSLEGPIDHWRAMRNTIHADVCEKSWN
                     PSMNSFAQTYGGDDLDASLLLIPLLGFLPPEDPRVISTLHAIERDLTHDGLVKRYHTS
                     EVQDGLPPGEGTFLACSFWLVDNLALQGRHEEAYAMFERLLDLANDVGLLAEEYDTVA
                     KRLVGNFPQAFTHVALVHTGMNLMRHEQGMAKATGQPTSRQDKPSDPVLAKVSKS"
BASE COUNT          477 a          715 c          718 g          456 t
ORIGIN      
        1 gccgcggacc cacgttactg ctttcggcga aaccgtcagg cgcgaagatt cattctaggc
       61 atttgtcaca agttttttca accttcctgc gcgtgcggtt ttgcagggct cttttgcaag
      121 gccgcttgca cccggagtga cggactggaa cttgcgacag aagcttgaga cagagaggca
      181 tgaaagacgc gaaacgcgaa tgcgcttcat aatcgaccgc tcgaaggact ggaacagctt
      241 ggcctccccc aaccacgcgg cacctgtact gcggccgcat cgacctcaaa ctccctagcc
      301 tatgcccgca ctgattgagg actacgccct ggtcggcgac ggccacaccg ccgccctgat
      361 ttcaaaagag gggtccatag actggctatg ctggccgcgc ttcgactccg gcgcgtgttt
      421 cgcggccctg ttgggcacgc cggaaaacgg ccgctggctg atcacgcccg acctgcccga
      481 cggcgccccg ccgccggtca tcacccgccg gtatcgcggc gatacgctga tcctggaaac
      541 cgatttcgaa acgcccgacg gccgggtttc actcatcgac ttcatgccgg tccgtgacgg
      601 cgcgtccgac ctcgtgcgca tcgtggtggg ccggcgcggc acggtgaaga tgaaaatgga
      661 actggtgctg cgcttcgatt acggttcctc cattccctgg gtcagccggc tccccgatga
      721 aagcgggatt cgcgcgatcg ccggtcccga tctatgcgtg ttgcgcaccc ccatcgatct
      781 caccggcgag aatatgcgca ccgtcggcga attcactgtg agcgaaggcg agcgcgtccc
      841 cttctcgctc gtgtattcgc aatcccactt gcggctgccg cgcgcactcg atccccatac
      901 gcaattcgca cgtaccgaga acttctggct ggaatggtcg ggacgcagca agcttgacgg
      961 ccgctggggt tcggcgatcc gccgctcgct gatcacgctc aaggcgctcg cctacgagcc
     1021 gaccggcggt attgtcgcgg cgccgaccac gtcgttgccg gagcaactgg gcggcacacg
     1081 caactgggat tatcggtact gctggttacg cgacgccacc attaccctgc tcgcgatgat
     1141 gcgcagcggt tactacgacg aagcgcgcgc ctggcgggca tggctcggcc gcgtgatggc
     1201 cgggtcgccg gaccaggtgc agatcatgta cggcattgcg ggcgagcggc gcttgcccga
     1261 atgggaagtc gactggctag cgggttacga aaactcgaag cccgtgcgca ttggcaacgg
     1321 tgcggtcaac cagttgcaac tcgatgtcta cggcgaagtg atgaatgcgc tgcatctcgc
     1381 gcgcgtgggc ggcctccaag gcgacgaaac cgtatggtcg atccagcgcg ccatgctcga
     1441 tcacctggac accatctggc aggaagcgga cgaaggcatc tgggaaacac gcggcggccg
     1501 tcagcaattc acgttttcga aggtcatggc gtgggtcgcc tacgaccgcg cgatcaaatc
     1561 ggcggaacag ttcagcctgg aaggcccgat cgaccactgg cgcgccatgc gcaacaccat
     1621 tcacgcggac gtgtgcgaga aaagctggaa tccatcgatg aactcgttcg cacagacgta
     1681 cggcggcgac gatctcgatg ccagtttgct gctgattccg ctgctcggct tcctgccgcc
     1741 ggaagatccg cgcgtgatct ccacgctcca cgcgatcgaa cgtgatctga cgcatgacgg
     1801 actggtcaag cgataccaca cgtcagaagt acaggacggc ctgccgcccg gagaaggcac
     1861 gtttctggcg tgtagcttct ggctggtcga caacctcgcg ttgcagggcc gccacgagga
     1921 agcgtatgca atgtttgagc gtttgctgga tctggcgaac gacgtaggcc tgctggccga
     1981 ggaatatgac acggtcgcga aacgtctggt tggtaacttt ccgcaggcgt ttacgcatgt
     2041 tgcgctcgtg cataccggca tgaacctgat gcggcacgaa caaggcatgg cgaaggcgac
     2101 aggccagccc acgtcgcgtc aggacaaacc ctcggaccca gtgctcgcga aagtaagcaa
     2161 atcgtaatgt tattcgaatg attgacgaaa attaacaact tcagcgcaaa attcatgcgg
     2221 aatagcggtg aagaccacgt atgttgcatt gcacaaaagc atgttcttag ctatgatcga
     2281 aagaggcttt ccgaccggtc gttcggcgaa tagggctttg aatcggcttt gaattggctt
     2341 tgattccgag ttcaaaattg gggtct
//
LOCUS       DATGBK010000339         2708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_73555, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000339 DATGBK010000000
VERSION     DATGBK010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73555"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..345)
                     /locus_tag="VKJ77_04975"
     CDS             complement(<1..345)
                     /locus_tag="VKJ77_04975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44662.1"
                     /translation="MLLMIRESEIQNVMHSSPLSTIPNRPTPSRSSVSPIVPKEWRNG
                     GMAPALRLVRWFDSLVVMIGLLCLVAYLCRASSVSGRCLSHIFRTQGQPANRAHQRYG
                     CVEWNDRPLGYRR"
     gene            complement(552..725)
                     /locus_tag="VKJ77_04980"
     CDS             complement(552..725)
                     /locus_tag="VKJ77_04980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44663.1"
                     /translation="MPWAPWFSMLASQSRASWAACCRAWITRVMSGVLGLHGWQWIFA
                     VEGAPAIVLGVIA"
     gene            complement(1299..2627)
                     /locus_tag="VKJ77_04985"
     CDS             complement(1299..2627)
                     /locus_tag="VKJ77_04985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006479112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44664.1"
                     /translation="MKKSLTADGIPYAGAAADEHVMFHKVAWRIIPFLFLCYVVSFLD
                     RINIGFAQLQMKHDLGFSDAMYGLGAAVFYVGYVLCEVPSNMLLVKFGARKTFTRIML
                     LWGLASVSMMFVSKPAHFYVLRFMLGVFEAGFFPGIVLYLTFWFPANRRAAVMSVFFA
                     GVAVAGVLGGLFSGWIMRDMGGVMGLFGWQWMFALEGAPAVILGFVALFYLVDKPHNA
                     AWLTAAEKDRLVALCAQGQAKDGAHDARSFAAALLNPRVYLFAFIYFSLTCASLTLNF
                     WMPLMIRDFGIKDVVSVSLYTVVPNAIGAVGLVLIARRSDRMGERRKHFAFCTIAGGL
                     ALAALTLHLNSFPAMLAILSLAAVFIFAALPIFWSVPPSYLSGNAAASGIAFISSIGI
                     TSGIVSPWVIGQIRTTTGSMDLAIYLLAGLLMLSGIALMAGVKADFAKQR"
BASE COUNT          687 a          791 c          796 g          434 t
ORIGIN      
        1 tctccggtaa cccaagggtc gatcattcca ctcgacacac ccataccgct gatgagcgcg
       61 gttcgccggc tggccctgtg tccgaaaaat atgagacagg caccgaccgg aaacagaaga
      121 tgcgcggcaa agataagcaa ccaggcagag caggccaatc atgacgacga gactatcgaa
      181 ccatcgcacg aggcgaagtg ctggcgccat tcctccattc cgccattcct tcggaacgat
      241 gggcgataca gatgacctcg acggcgtcgg tcgattggga atcgtcgaca acgggctgct
      301 gtgcatgaca ttttgaattt ccgactcgcg gatcatcaaa agcattcaga cgatcagtat
      361 cgagacgccg tagttagcga aaagtaaaag aaggagaaca gataggttcg cggattgcga
      421 agcgcctgac caagcgaatg cgcggcgcga aaaggagtgg gtgcacgttc ggtggagaga
      481 tcgtcggcga ggcgcctttt ctcatcggca gaaaattaga cgacctggtc ctgccggtcg
      541 ccgagcaaga atcaggcgat cacaccgagc acgattgcag gcgcgccttc gacggcgaat
      601 atccactgcc agccgtgcag acccagcacg cccgacatga cgcgcgtgat ccacgctcga
      661 cagcatgccg cccacgatgc ccgcgactgc gacgccagca tagaaaacca aggggcccac
      721 ggcacgtcgc ttcgccggaa atcagtagat caggcaaagc accacgtcct ggaaaaaagc
      781 cgcctcgaac aggccgagca gaaagcgcaa cacctaaaag tgctgcactc gcgactgaaa
      841 tcatcgcgac cgacgcggcg cccctcagcg ccatcatgcg agcaaacgtg cgatgggcgc
      901 cgaacttgcg caacagcagg ttgctgggca cttcgaacag gactgagccg acgaaaacga
      961 gtaccgcgcc aaggctctac attgtgtcgg tgatgccagg gtcgtgttca tctgcgatta
     1021 ggcgaagcca acgttgcagc gatccagaac cgacacgatg tagcagatga acaggaacgg
     1081 gataatccgc aggaaaatgc ggcgttatag cgcgtcgttt cgcgattcgt ccgcgatgag
     1141 cgctgatggc cgcatgcggt gtttgtcggg atcggtgcgg acatggtctg tttctccagc
     1201 attggtcgtc gtcccgaggc tgacgactaa cgctaccgaa ccgtttccag cgcgacgaag
     1261 ggcgcgcgaa atatgcggcc cctcgtacaa gcgcgggctc atcgttgttt cgcgaagtcc
     1321 gccttgacgc ccgccatcag cgcaatgcca ctgagcatca gaagaccggc gagcagataa
     1381 atggcaaggt ccatgcttcc cgtggtcgtg cgaatctggc cgatcaccca cggactcacg
     1441 atgccgctcg tgatcccgat actgctgatg aaggcaattc ctgacgccgc ggcatttccc
     1501 gacaagtagc tcggcggaac agaccagaag atcggcaatg cagcgaagat aaagacggcc
     1561 gcgagggaaa gaatcgcgag catggcggga aagctattca agtgcagggt caacgcggca
     1621 agcgccagcc ccccggcaat ggtgcaaaac gcgaagtgct tgcgccgctc acccatacgg
     1681 tccgaacgac gcgcgatcag aacgagacca accgcgccga tcgcattcgg aaccaccgta
     1741 tagagactca ccgagacgac atccttgatc ccgaaatcgc gaatcatcaa cggcatccag
     1801 aagttgagcg tgagcgacgc acacgtcagc gaaaagtaga tgaacgcgaa cagatagaca
     1861 cgggggttga gcaacgccgc ggcgaaactg cgtgcgtcat gcgcaccgtc ctttgcctgt
     1921 ccctgtgcgc agagagcgac cagacggtcc ttttcggctg cggtaagcca ggcggcattg
     1981 tgcggtttgt cgaccagata gaacaaggcg acgaacccga ggatcacagc cggtgctcct
     2041 tcgagagcaa acatccactg ccagccgaac aggcccatta cgccgcccat gtcgcgcatg
     2101 atccatccgg agaacagccc accgagcacg ccggccacgg cgacgcctgc aaagaagacc
     2161 gacatcaccg cggcgcgacg gttggcggga aaccaaaagg tcaggtaaag aacgatgccc
     2221 gggaaaaagc cggcttcgaa caccccgagc atgaaacgca acacgtaaaa gtgggccggc
     2281 ttcgacacga acatcatgga taccgaagcg aggccccaca aaagcatgat gcgcgtgaac
     2341 gtcttgcggg cgccgaactt gaccagcaac atattgcttg ggacttcgca aagaacatag
     2401 ccgacataga acacggccgc accaagtccg tacatggcgt cgctgaagcc gaggtcgtgc
     2461 ttcatctgca gctgtgcaaa tccgatgttg atgcgatcca gaaatgacac gacgtaacag
     2521 agaaacagaa aggggatgat gcgccacgcg accttgtgaa acatcacgtg ttcatcggcc
     2581 gcagcgcccg cgtaagggat gccatcggcg gtgagggatt ttttcatgtc tcgctccagg
     2641 tgcgttgcgg ggccttttgc aggacgagca gcgccgaggc gtctatgcgc ctttatgttt
     2701 gaagagga
//
LOCUS       DATGBK010000340         1983 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_258804, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000340 DATGBK010000000
VERSION     DATGBK010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258804"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1394)
                     /locus_tag="VKJ77_04990"
     CDS             complement(<1..1394)
                     /locus_tag="VKJ77_04990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HMC44665.1"
                     /translation="MQSASLSDARVAARHRLLWRWHFYAGLFVMPLLLVLAITGTLYC
                     FQPQIEPLLYHDRMIVDARAGPRLSEQVLLAKATAAEPRDAVPTTAVINTNPRRSAEF
                     VFRLQSGSSESVYLNPYTGEVLGRLSVENRLMKQIRNLHRGLMLGKTGEIVMELGGCW
                     TLVMIGTGIALWWPKARQAGGRFVPRLSSSKGRAWWRELHAVGGAWLALGALFFVLSG
                     LPWSSTWGKQFKALATSAQLGYPQGAWGKAHVHSAKPSMAMADPSMAGMKMDDLPLPQ
                     TPWAVGATRVPHSAADAKDFTIPLDKVIALAAQAGVMDGYDIALPTTAEGVYTVSYFP
                     SDPQAERTLHIDRYSGQILSDIAYRDYGRVAKWISYGTSLHMGRYFGVANQILASLIS
                     LGLAVMSISGFVMWRKRKPGRAIGAPSRPVLNPPMRAWVVGLTALGIVFPMMGLTMLI
                     VWISDRVLFSPGKVA"
     gene            complement(1457..1757)
                     /locus_tag="VKJ77_04995"
                     /pseudo
     CDS             complement(1457..1757)
                     /locus_tag="VKJ77_04995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492348.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
BASE COUNT          424 a          610 c          594 g          355 t
ORIGIN      
        1 gcaactttgc cgggactgaa cagcactcgg tccgatatcc atacgatcag catcgtcaaa
       61 cccatcatcg ggaagacgat accgagcgca gtcagaccaa caacccatgc gcgcatcggc
      121 ggattgagga ccggtctgga cggcgcaccg attgccctac ccggtttgcg tttacgccac
      181 atcacaaaac cgctgattga catgacagca agtccgagcg agatcagcga cgcaagaatc
      241 tggttcgcca cgccgaaata acgccccatg tgcagcgacg tgccgtacga aatccacttt
      301 gccacgcgcc cgtaatcgcg atacgcaatg tccgagagaa tctggccgct gtatctatcg
      361 atgtgcaatg tgcgttcggc ttgcggatcg gatggaaagt acgacaccgt gtacacgccc
      421 tcggcggtgg tcggcaacgc gatgtcgtaa ccatccatga cgcccgcttg agctgcgagt
      481 gcgatgacct tgtcgagcgg aatagtgaaa tctttagcat cagcagcgct gtgcggaacg
      541 cgcgtggcgc ccaccgccca cggtgtctgc ggcaacggca gatcgtccat cttcatgccg
      601 gccatcgatg gatcggccat ggccatcgat ggcttcgcgg aatgcacatg cgccttgccc
      661 cacgcgcctt gcggataacc gagttgcgcg gacgtcgcca gtgccttgaa ttgcttgccc
      721 catgtactcg accatggcaa gccgctgagc acgaaaaaca atgcgccgag cgcgagccac
      781 gcaccgccga ccgcgtgtaa ttcacgccac catgcacggc ctttcgacga cgacaaccgc
      841 ggtacgaacc ggccgcccgc ctgacgcgct ttcggccacc acaaggcaat gcctgttccg
      901 atcatcacca gcgtccagca tccccccagt tccatgacga tctcgccggt cttgcccagc
      961 atcaatcccc gatgcaaatt gcgaatttgc ttcatcaacc ggttctcaac gctcagcctg
     1021 cccagcacct cgcccgtgta gggattgaga tagacgcttt cactcgatcc cgattggaga
     1081 cggaacacga attcggcgct gcggcgtgga tttgtgttga tgacagcggt agtcggcaca
     1141 gcatcgcgtg gctcggcggc cgtcgctttc gcgagcaaga cctgttcgct cagacgcggc
     1201 ccggcgcggg catcgacgat catccggtcg tgatacagca gcggttcgat ctgcggctgg
     1261 aagcagtaca gcgtgccggt gattgcgagc accagcagca gcggcatgac aaacaaacct
     1321 gcatagaaat gccagcgcca taacaagcga tgccgcgcag ctacgcgtgc atcggagaga
     1381 gaagcggatt gcatgtgagg tgtccttcta taagttggct gcagacccgg gagacccgaa
     1441 agacccggag cgaccgtcag atctcgatcc gaccttcgac ataaaccgtc cgccccgcgt
     1501 acggatggaa cacgtaataa cggtgatcga agaggttatc cacgccgatg ccgagctcgg
     1561 ttcgcttcgt gggacggaag gtgaatttgg cgtcgacgac tgtgtacgtg ctcgtgccac
     1621 cgtaggtgtt cgggtttcgt atcggtgttg gtgagcgtgt tgtattcgcg gcccgaataa
     1681 cgcgccgcga ccgtgacggc gctttggctc gtcgcgcgcc agatggcggc cacgaacgca
     1741 cggcggcacg gcagcctgac ggctgccgtg ctcgcttgag gagcttgagc atcgaagaat
     1801 cctgaatgag tggacgcaga ccggccggcc acgggcgctt aaacggcgcg cgtagtcacg
     1861 gcaaacagcc acgacgagtc aatacggacg gacttcagga aacgacgggg ggcgctcgcg
     1921 gagacgcggc gttgaacgac ttgacgtgta cgacttgcac aaccggtgcg gcagcgaggc
     1981 gcg
//
LOCUS       DATGBK010000341         1622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_212301, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000341 DATGBK010000000
VERSION     DATGBK010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212301"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..1344)
                     /gene="frc"
                     /locus_tag="VKJ77_05000"
     CDS             complement(97..1344)
                     /gene="frc"
                     /locus_tag="VKJ77_05000"
                     /EC_number="2.8.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033608 - formyl-CoA transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA];
                     GO_process: GO:0033611 - oxalate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyl-CoA transferase"
                     /protein_id="HMC44666.1"
                     /translation="MSKALDGVRILDFTHVQSGPTCTQLLAWFGADVIKVERAGAGDI
                     TREQLRDIPDADSLYFTMLNHNKRSITIDTKNPDGKKVLESLVKKCDVLVENFAPGAL
                     DRMGFTWERIQELNPRMIVASVKGFGPGPYEDCKVYENVAQCAGGAASTTGFDDGPPV
                     VSGAQIGDSGTGLHLALGIVTALYQRNATGRGQKVLAAMQDGVLNLCRVKLRDQQRLE
                     RTGTMKEYPQYPNGTFGEAVPRAGNASGGGQPGWILKCKGWETDPNAYIYFITQAPVW
                     GEICKVIGKEEWIDHPDFRTPAARLPHLKDIFAEIELWTMTKTKFEAMEILNQHDIPC
                     GPILSMKEIAEDPSLRKTGTIVEVDHPVRGKYLTVGNPIKLSDSPTDVVRSPLLGEHT
                     DEVMAELGYSPDQVATLRSLGAI"
BASE COUNT          266 a          445 c          524 g          387 t
ORIGIN      
        1 aagccctgaa gaagtggtgc tgccgtcttt gaggaacggc agccggaacc agcagcgatg
       61 tctgcctaca taaaggaacg caagcgggac cttgaactag atcgccccga ggcttcgcag
      121 cgtcgcgacc tgatccggcg agtacccaag ttcggccatc acttcatcgg tatgttcgcc
      181 caggaggggt gagcgcacga cgtcggtggg gctatcggag agcttgatcg ggttgcctac
      241 ggtcaggtat ttgccgcgca ccggatggtc cacttcgacg atcgtgccgg tcttgcgcag
      301 cgatgggtct tcggcaattt ccttcatcga gagaatcggg ccgcacggaa tatcgtgctg
      361 gttcaggatc tccatggctt cgaatttggt cttggtcatc gtccacagtt cgatctcggc
      421 gaagatgtcc ttgaggtgtg gaagccgtgc ggctggcgtg cgaaagtcgg gatgatcaat
      481 ccattcttcc ttgccgatca ccttgcagat ctcgccccag accggcgctt gcgtgatgaa
      541 gtagatgtac gcgttcggat cggtttccca gcccttgcac ttcaggatcc agcccggttg
      601 gccgccgccc gatgcgttgc cggcgcgcgg cacggcctcg ccgaacgtgc cgttcgggta
      661 ctgcggatat tccttcatcg tgccggtgcg ttcaagccgt tgctggtcgc gcagcttcac
      721 gcggcagagg ttgagcacgc cgtcctgcat ggcggcgagc accttctggc cgcggccggt
      781 ggcgttgcgt tgatagagcg ccgtgacaat gccgagcgcg agatgcaagc ccgtgcctga
      841 gtcgccgatt tgcgcgccgc tgacgaccgg cgggccgtcg tcgaaacctg tcgtcgatgc
      901 cgccccgcct gcgcactgag cgacgttctc gtagaccttg cagtcctcgt aggggccggg
      961 gccgaagcct tttaccgatg ccacgatcat cctcgggttc agttcctgga tgcgttccca
     1021 cgtgaagccc atgcggtcga gtgcgccggg ggcgaagttc tcgaccagca cgtcgcattt
     1081 tttcacgagc gactcgagga ctttcttgcc gtccgggttc ttcgtatcga tggtgatcga
     1141 acgtttgttg tggttgagca tggtgaagta gaggctgtcg gcatcgggga tatcgcgcag
     1201 ttgttcgcgc gtgatgtcgc ctgcgccggc gcgctcgacc ttgatgacat cggcgccgaa
     1261 ccatgcaagc aattgcgtgc aggtcgggcc tgattgaacg tgcgtgaaat cgaggatacg
     1321 caccccgtcg agggctttgc tcatgcctgt ctcctaacct ttagcaggtt ttatatcgtg
     1381 gtacttgtgg tgcgcttggg tattgccggg tttcagttgt tgctgttgct ctggacatga
     1441 tgggctgttt ttctccgctt ctgtagatgg ggagggccct catggcgccg ggataaagcg
     1501 ccgtcactgt gatatacaat attccataca ctgtattagt caagtggttt tgcgtaggat
     1561 gcggtgggtt gtgcggtgcg gtaagctgga gatgccggct agatggcgaa tgttggtcgt
     1621 tt
//
LOCUS       DATGBK010000342         2440 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_166076, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000342 DATGBK010000000
VERSION     DATGBK010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2440
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166076"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..717
                     /locus_tag="VKJ77_05005"
     CDS             <1..717
                     /locus_tag="VKJ77_05005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HMC44667.1"
                     /translation="GGVGGIQGSLAQFAAVDARLIALKPSNLSMKEAASLPLSFITSY
                     QGIVDRAQLETGQTVLVQGGAGGVGHVSVQLAHALGARVFATVSKGDADLVTSYGATA
                     IDYREYSVEQYVQEYTGGEGFDLVADTVGGATLDASFSAVKQFGHVVSALGWGTHALA
                     PLSFREATYSGVFTLAPLLTGKHREHHGEILQVATQLVDAGKLLPRVDPRSFDLAGAD
                     LAYQAIAAGTTKGKIVVDVQ"
     gene            complement(841..1728)
                     /locus_tag="VKJ77_05010"
     CDS             complement(841..1728)
                     /locus_tag="VKJ77_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HMC44668.1"
                     /translation="MDKTASGWMNGFLGMLIFSGSLPATRVAVAAFDPVFLTVARAGI
                     AGLLGLALLLVFRQKRPERGDLISLAVVACGVVIGFPLLTALALKHITAAHSVVFVAL
                     LPLSTAIFGVLRGGEHPRPAFWLFSGFGALLVAGFALARGTGASPVGDVLMFAAIIVC
                     GLGYAEGGRLSRKLGGWQVISWALVLSLPIMAPLALLTMPSSWADVGGSAWMGLAYVS
                     LFSMLIGFVFWYRGLAQGGIAAVGQLQLLQPFFGLVLAATLLHEPVGWPMVAVATAVV
                     LCVVGAKRFARPANPVLSR"
     gene            1835..>2440
                     /locus_tag="VKJ77_05015"
     CDS             1835..>2440
                     /locus_tag="VKJ77_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HMC44669.1"
                     /translation="MEDTTFFSADVGTLVERVMQTIRQRIAGRTLAPGAKVPSIRGFA
                     ETLQVSKSTVVEAYERLAAEGLIQSRRGSGFYVAGHLPPLSLAELGPRLDRVVDPFWV
                     SRQSLEAGANALKPGCGWLPASWLPEAGLRRALRSVARTDAAVLADYGTSLGLPPLRQ
                     LLARRMADRGIEAAPDQIILTESGTQAIDLLCRLLLEPGDTV"
BASE COUNT          516 a          779 c          743 g          402 t
ORIGIN      
        1 ggcggcgttg gcggcatcca gggttcgctc gctcagttcg cagcagtaga cgcgcggctg
       61 atcgcgttaa aaccttccaa cctgtcgatg aaagaagccg catccctgcc gctgagtttc
      121 atcacttcct atcagggcat cgtggacagg gcgcagttgg aaacggggca aacagtgctt
      181 gtacagggcg gagcaggtgg tgtcgggcat gtgtccgtgc aactcgcgca tgcgctcggc
      241 gctcgcgttt ttgcaaccgt gagcaagggc gacgccgatc tcgtgacgag ttatggcgcg
      301 actgctatcg actatcgtga atactcggtg gagcaatacg ttcaggaata cacgggcggg
      361 gaaggttttg acctggtggc cgacaccgta ggcggagcga cgctggacgc atcgttttcg
      421 gctgtcaagc aattcgggca tgtcgtgagc gcgctcggct ggggcacgca cgccctcgct
      481 ccgttgtcat tccgcgaagc aacgtactcg ggcgtattca cgctcgcgcc gctgctaacc
      541 ggcaaacacc gtgagcatca tggagaaatc ctgcaggtag cgacgcaact ggtcgacgcg
      601 ggaaagctcc tgcccagagt ggacccacgc agtttcgacc tggctggcgc cgacctcgct
      661 tatcaggcta ttgcagcggg aaccaccaag ggaaaaatag tcgtcgacgt tcaatagtgg
      721 cattggatca gcatggattg ccgcgggcgc gtaaagacaa agcgggcttt gggtccggtc
      781 gctgagttct tcgggcgctc acctacgcag gccgcactca tgacggtggc cggaaaatgc
      841 ctagcgcgat agcacggggt tcgccggtcg cgcgaaccgc tttgcgccta ccacgcatag
      901 caccacggcc gttgcaaccg ccaccatcgg ccagccgact ggctcgtgca acaacgtcgc
      961 ggcaagcacg agcccgaaga acggctgcag caattgcaac tgccccaccg ccgcaatacc
     1021 gccctgagcc agcccgcgat accagaagac aaagccgatc aacatactga acaaggacac
     1081 gtaggcgagt cccatccatg ccgatccacc cacgtcggcc caggacgatg gcatggtgag
     1141 cagtgccagc ggcgccatga taggcagcga taacaccagc gcccacgaga tcacctgcca
     1201 gccgccgagc ttgcgcgaga gtctgccgcc ttccgcataa ccaagcccgc agacgatgat
     1261 ggccgcgaac atcagcacat cgccgacagg cgacgcgccc gtcccacggg ccagcgcaaa
     1321 accggctaca agcaaggcgc caaagccaga aaacaaccag aacgcagggc gcgggtgctc
     1381 acctccgcgc aacacgccga agatcgcggt cgaaagcggc agcaacgcaa caaagacaac
     1441 cgaatgagcg gcggtgatgt gcttgagcgc aagagcggtg agcagcggaa agccgatgac
     1501 gacgccgcac gcgaccaccg cgagcgagat cagatcgcct cgttcgggcc gcttttgacg
     1561 gaacaccagc aagagcgcga gccccagcaa gcctgcaatg ccggcacgcg caaccgtgag
     1621 gaagaccggg tcgaaggctg cgaccgcaac gcgtgtcgcg ggcaatgagc cgctgaaaat
     1681 cagcatcccg aggaaaccat tcatccatcc gcttgccgtc ttgtccatca tgcctcccta
     1741 ttttcagcta gcagtatcga cccgcaaagc atggattttc cagagacagt gcactacagt
     1801 taggtaaaac tgtatgggcc aaaaatcagt acacatggaa gacaccacct tttttagcgc
     1861 agacgtcggc accttggtcg aacgtgtcat gcagaccatc cggcagcgaa ttgccggacg
     1921 caccctggcg ccgggtgcca aggttccgtc cattcggggc ttcgccgaaa ccttgcaagt
     1981 ctcgaagtcc accgtagtgg aagcctatga gcgcctcgct gccgaagggc tcatccagtc
     2041 gcgccgcggg tcgggctttt acgtcgccgg acacctgccg ccgctgtcgc tcgctgagct
     2101 gggcccgcgc cttgaccgcg ttgtcgatcc gttctgggtg tcgcggcaat cgctggaagc
     2161 tggcgcgaat gccctgaaac ccggttgcgg ctggctgcct gcatcgtggc tgccggaggc
     2221 ggggctgcgt cgtgcattga gatccgtcgc gcgcaccgac gccgccgtgc tggccgacta
     2281 cggcacatcc ctcgggctcc cgccgctgcg gcaattgctc gcccgtcgca tggcggatcg
     2341 cggcattgag gcggcgcccg atcaaatcat cctcaccgaa tccggcacgc aagccatcga
     2401 cctgttatgc cgtctgctgc tcgaaccagg cgatacggtg
//
LOCUS       DATGBK010000343         4331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_258819, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000343 DATGBK010000000
VERSION     DATGBK010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4331
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258819"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..1420
                     /locus_tag="VKJ77_05020"
     CDS             11..1420
                     /locus_tag="VKJ77_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008110971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC44670.1"
                     /translation="MITALEAELGADAVLTAESDLAPFTEDWRGRYKGPAAALVQPSN
                     TAQVSAVVRLCATYGVPVLPQGGNTSLCAGAVPANVGVPPVIVNLTRMRRIRHIDAAN
                     GSMEVEAGCVLKTIQDAAAAEQRLYAVSLGAEGSCQIGGNLSTNAGGTAVLRYGNTRD
                     NVLGLEVVLADGTVWNGLRALRKDNTGLDLKHLFIGTEGTLGIITAATLKLHPLPAQH
                     ALAWFAPVDPAAALHILGMFQSACGSRLSAFEMINRRQLELVIEHVPGRRNPLSELHE
                     WHVLVELGDTHGGEEMAALMQQTLEHAAEAGLIHDAVLASNETQRAALWEIRHSVSEA
                     NKKAGVGLTTDCAVPVSAVPLFIERATQAVHAIVPGLDIIVVAHLGDGNAHFIPFFTF
                     DAWHQLADRSSMANTMRRCVNDVAHELRGTFSAEHGVGQTGLPEMAHYKSAAELGLMR
                     AVKNALDPHNLFNPGRLLP"
     gene            1522..2628
                     /locus_tag="VKJ77_05025"
     CDS             1522..2628
                     /locus_tag="VKJ77_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44671.1"
                     /translation="MKKQPARDEIRPLEQPGRRTVIKTAVAGAAAVAFPFVCTPSRAA
                     NKRIVIRDDGGIYTKAYGAVFYKPFTEKTGIEVIGVQANAEPTAQIKSMVETGSYTWD
                     MAKISQPAILLLTGGGKEYLEKHGLEADPVIAKIPAQYMSPYGVGTNIYTTVLAYRTD
                     AFKGRKAPNSWADMWNVKDYPGRRGLRKYPFDTFEEAMMADGASPSQVYPVNFDKGIA
                     SLDKISKHVDVWWTTGSQVEQMLGSGEVDMISTWVSRAQSAIANGAPVAIVWNQNIWG
                     VDNWSILKGTPNAGACREFIKFASDPKRQAALVEYFPAGVTQTEAFNYIKPEIAKNCP
                     TFPENMKNGLHIDAKFWQEKQSVALERFNSWILT"
     gene            2683..3780
                     /locus_tag="VKJ77_05030"
     CDS             2683..3780
                     /locus_tag="VKJ77_05030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44672.1"
                     /translation="MSASNLQITGLCKRYGDFVALAPIDLDVAQGEFLTLLGPSGSGK
                     TTLLSLIAGLAQPDDGQVRINGIDVTYGAPYERDIGMVFQNYALFPHMTVAENISFPL
                     QMRKTDAKATRAKVMQALEMVHLPHVAGRYPRELSGGQQQRIALARCMVYRPSIILMD
                     EPLGALDKKLRDQMQLEIKRIHRDLGTTIVYVTHDQEEAMTMSDRICLMNAGSIAQLG
                     TPADLYFRPKSVFVADFLGESNLLDAVVTGRSGDQVQISVQGGANVNAMAYDSVIRDG
                     KPVKLMLRPQNLQIHDGPPAASINGGTLSAKLTDIMVTGSMTKLYLQSHISDAPPLVA
                     AYPTNRLGRQYEIGQTLGLSWLTADAVAIAG"
     gene            3877..>4331
                     /locus_tag="VKJ77_05035"
     CDS             3877..>4331
                     /locus_tag="VKJ77_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44673.1"
                     /translation="MSAPIIVLLLVMLVYPVGQLLLLSVHNGSGFTLVEYKRLFASSV
                     YVDVLLITLKISLWTTFFSVLTGYPIAYLISSLTRERKNRLLFWVLLSFWTSFLVRTF
                     AWVVLLGRNGVINQVLLGLGIIDRPLSLLYNFSAVIVGMVHALMPLAVLT"
BASE COUNT          846 a         1339 c         1334 g          812 t
ORIGIN      
        1 cgtcacggcg ttgatcacag ccctggaagc ggaactcgga gccgatgcgg tactgacggc
       61 cgaatccgac ctcgcgcctt tcacggaaga ctggcgaggc cgctacaagg gaccggcagc
      121 agcgctcgtc cagccctcga acacggcgca ggtgtcggcc gtcgtgcgtt tgtgcgcgac
      181 atacggcgtc ccggtcctgc cgcaaggcgg caacaccagc ctgtgcgcgg gtgcagtgcc
      241 ggcgaacgtg ggcgtgccgc cggtcatcgt caatttgacg cgcatgcggc gtattcgtca
      301 tatagatgcc gccaacggct cgatggaagt cgaagccggc tgcgtgctga aaaccatcca
      361 ggacgcggca gccgccgaac agcgcctgta cgcggtcagt ctgggtgccg agggttcgtg
      421 ccagatcggc gggaatttat cgacgaatgc gggcggcacc gccgtcctgc gctacggcaa
      481 cacgcgcgac aacgtgttgg gtcttgaggt cgtactcgcc gacggcaccg tctggaatgg
      541 cctgcgcgcc ttgcgcaagg acaacacggg gcttgacctg aagcacttgt tcatcggcac
      601 ggaaggcacg ctcggcatca tcaccgcagc gacgctgaaa ctgcatccgc tgccggcgca
      661 acacgcgctc gcgtggttcg ctcccgtcga tccggccgcc gcgctgcaca tcctcgggat
      721 gttccagtcc gcgtgcggat cgaggttgag cgccttcgag atgatcaacc gccgccagct
      781 cgaactcgtg atcgagcatg ttcccggccg ccgcaatccg ctctctgaac tgcatgaatg
      841 gcacgtgctg gtcgaactag gagacaccca cggcggcgag gaaatggccg cgttgatgca
      901 gcaaacgctc gaacacgccg cagaagccgg gctgatccac gacgccgtcc tcgccagcaa
      961 cgagacacaa cgcgccgcgc tctgggaaat tcgccatagc gtgtcggaag ccaacaagaa
     1021 agcgggcgtg ggcctgacga ccgactgtgc ggtgccggtg tccgcagtgc ccctgtttat
     1081 cgagcgtgcc acgcaagcgg tgcatgccat tgttcccgga ctggacatca tcgtggtcgc
     1141 gcatcttggc gacggcaacg cgcatttcat ccccttcttc accttcgacg cctggcatca
     1201 actcgccgat cgctcctcga tggccaacac catgcgccgc tgcgtgaacg acgtcgcgca
     1261 tgaattgcgc ggcacgttta gcgcggagca cggcgtcgga caaaccgggc tgccggaaat
     1321 ggcgcactac aaatccgcgg cggaactcgg cctgatgcgc gcggtgaaaa acgcgctcga
     1381 tccgcacaac ctgttcaatc cgggccgttt gctgccttga atttcagggt ccccttcgga
     1441 ccacacgatc caggccaaga aaggaagcct ggacgttcgc atcacagcgt ttctgtttct
     1501 atccacaccc ttggagccga catgaaaaag cagcccgcac gcgatgaaat tcgaccgctt
     1561 gaacaacccg gccgccgcac ggtcatcaaa acggctgtcg ccggcgctgc cgcggtggcg
     1621 ttcccgttcg tctgtacacc atcgcgcgcg gcgaacaagc ggatcgtcat tcgcgacgat
     1681 ggcggcatct acaccaaggc gtatggcgcg gttttctaca agccgttcac ggagaagaca
     1741 gggattgagg tgatcggcgt gcaagccaac gccgaaccga ccgcgcagat caagagcatg
     1801 gtcgagaccg gcagctacac gtgggacatg gccaagatca gccagccggc catcctcctg
     1861 ttgacgggtg gcggcaagga atacctggag aagcacgggc ttgaggccga cccggtaata
     1921 gcgaagattc cggcgcaata catgtcgccg tacggcgttg gcaccaacat ttatacgacc
     1981 gtgctcgcgt atcgcaccga tgccttcaag ggtcgcaaag cccccaattc atgggccgat
     2041 atgtggaacg tcaaggacta cccgggccgt cgcgggctgc gcaagtatcc gttcgacacc
     2101 ttcgaagaag cgatgatggc agacggcgca tcgccctcgc aggtctatcc ggtgaacttc
     2161 gacaagggca tcgcgagcct agacaagatt tccaagcacg tggacgtgtg gtggaccacg
     2221 ggctcgcaag tcgaacagat gctgggttcc ggtgaagtcg acatgatcag cacgtgggta
     2281 tcgcgagcgc aatcggctat tgcgaacggc gcgccggttg cgatcgtctg gaaccagaac
     2341 atttggggcg tcgacaactg gtcgattctc aaaggcacgc cgaatgcggg cgcgtgccgc
     2401 gagttcatca agtttgcgtc cgatccaaaa cgccaggccg cgctggtcga gtatttcccg
     2461 gccggtgtta cgcaaaccga agcgttcaac tacatcaagc ccgagattgc gaagaactgc
     2521 ccgacgttcc cggagaacat gaagaacggc ctgcatatcg atgcgaagtt ctggcaggaa
     2581 aaacaaagcg ttgcgctcga acggttcaat agctggatcc tgacctgagc gctgttttca
     2641 gcgcgttccc tttgtgtttt caccgccacg gatgccgatt ccatgtctgc ctcgaatctt
     2701 caaatcacgg gactgtgcaa gcgttatggc gacttcgtcg cgctcgcgcc gatcgatctc
     2761 gatgtcgccc agggtgaatt cctgaccctg ctcggaccca gcggctcggg caagacgacg
     2821 ctgctcagcc tgatcgcggg gctcgcgcaa ccggacgacg gccaggtgcg gatcaacggt
     2881 atcgacgtga cgtatggtgc gccgtatgag cgggacatcg gcatggtgtt tcagaactac
     2941 gcgctgttcc cgcacatgac ggtggcggag aacatttcgt tcccattgca gatgcgcaag
     3001 accgacgcca aagcgacgcg tgcgaaggtc atgcaggcgc ttgagatggt gcatctgccg
     3061 catgtggcgg gacgttatcc gcgtgaattg tcgggcggtc agcagcagcg gatcgcactc
     3121 gcgcgctgca tggtctaccg gccgtcgatc atcctgatgg acgaaccgct cggtgcgctc
     3181 gacaagaaat tgcgcgatca gatgcaactg gaaatcaagc gaattcatcg cgacctgggc
     3241 acgacgattg tctacgtcac gcacgatcag gaagaagcga tgaccatgtc cgaccgcatc
     3301 tgcctgatga acgcgggttc gattgcgcaa ctcggcacgc ctgcggatct gtatttccgc
     3361 ccgaagagcg tgtttgtcgc ggacttcctt ggcgaatcga acctgctcga cgcggtggtc
     3421 acgggacgca gcggcgatca ggtgcagatc agcgtgcagg gtggcgcgaa cgtcaacgcg
     3481 atggcgtatg actcggtgat ccgcgacggc aagccggtca agctgatgct gcgcccgcag
     3541 aacctccaga tccacgatgg accgccggcc gcgtcgatca acggcggcac gttgtcggca
     3601 aagctcaccg acatcatggt caccggcagc atgacgaagc tttatctgca gtcgcatatc
     3661 agcgatgccc cgccgcttgt cgcggcgtat cccaccaacc ggctcggccg ccagtacgag
     3721 atcgggcaaa cgctcgggct ttcgtggctg accgcggacg ctgttgccat tgcggggtaa
     3781 gcgatgaatc gttccgccct gatcgctgaa caaatgcatc ccggcgcgcc gccaccacgc
     3841 ccggctcgat ggcgcgcgtg gttgcgaccc ggcgcgatga gcgcgccgat catcgtgttg
     3901 ctgctcgtga tgctcgtgta ccccgtcggc cagttgttgc tgctgagcgt gcataacggc
     3961 agcggcttta cgctggtcga atacaagcgg ctctttgctt cgtcggtgta tgtggatgta
     4021 ttgctgatca cgctgaagat ttccttgtgg acgaccttct tctccgtgct caccgggtac
     4081 ccgattgctt acctgatttc ctcgctgacg cgtgaacgca agaaccgcct gctgttctgg
     4141 gtcctgctct ccttctggac cagctttctc gtgcgcacgt tcgcatgggt cgtgctgctc
     4201 gggcgcaacg gcgtgatcaa ccaggtgctg cttggacttg gcatcatcga ccggccgctg
     4261 agcctgctct ataacttttc cgccgtgatc gtgggcatgg tccacgcgct gatgccgctc
     4321 gcggtgctga c
//
LOCUS       DATGBK010000344         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_120080, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000344 DATGBK010000000
VERSION     DATGBK010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120080"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1180)
                     /locus_tag="VKJ77_05040"
     CDS             complement(<1..1180)
                     /locus_tag="VKJ77_05040"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC44674.1"
                     /translation="MSHYDFIVIGAGVIGASVAHHLAALGAKSVLVVDRGTIGAGTTS
                     QSSGLLRTHYSVRQNVELARSSWHAFNNFAAYVDDDEASCGLVKCGYMICAPEGDKLA
                     PLQASLDAQQGMGIEVQLLSKAEARERLPIAQFDDAALIGYEPEAGFADAYLVATGFA
                     RSARRHGVKIMENTTVTGLVRDGRRVTGIETSAGTFSCGALISTQNIWTPELAGWIGV
                     PLPVKPERHTVLALECDAAPYTFSMPAFKDLGSAGMLYFRSYGGSQMLVSEGVVGETL
                     NAPETEQGDISLDYVGEVGAQVAERFTAYEMAGLASSWTGVYDVTPDWNPVLGPVGDI
                     EGLTVGFGFSGHGFKLSPGIGKILAQHALGQATDVSLAPYSLDRFASGALLVGKYGSG
                     A"
     gene            complement(1333..1725)
                     /locus_tag="VKJ77_05045"
     CDS             complement(1333..1725)
                     /locus_tag="VKJ77_05045"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007745119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC44675.1"
                     /translation="MKRQIIRVEPLSSYLERWKAPASVMTRHGDTLYVSGLPPFDPDT
                     GEVVSASIERQTELALEQMKLCLETAGSSLENVLKCNVYCTSVEKFAAINAIYVRYFP
                     QDPPARIFVCVPAWAGKFDIEIDCIAAV"
     gene            complement(1846..>2478)
                     /locus_tag="VKJ77_05050"
     CDS             complement(1846..>2478)
                     /locus_tag="VKJ77_05050"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HMC44676.1"
                     /translation="HSPEHRVFTRPGTRQRSMSLLLLLDLSASTGDIAPGEGRSFLDM
                     EKEAAQALVQAARSANHRIAAHGFSSNTRECVNYYRLLDFDATLDETSSASIEACTAR
                     YSTRMGAAIRHAASLISLETSERRVIVVITDGTPSDIDVFDNDYLVRDAQLAAEDARR
                     SGIVTCGIAVDEGGADYMRRIVGREYCRIVNTPATLPAQLVALFSRIAAS"
BASE COUNT          512 a          752 c          746 g          468 t
ORIGIN      
        1 ccgcgcctga accgtatttg ccgaccagca acgcaccgct cgcgaaacga tcgagcgagt
       61 agggcgcgag cgagacgtcg gtagcctggc ccagcgcgtg ctgcgcgaga atcttgccga
      121 ttcccggcga cagcttgaag ccgtgcccgg agaaaccgaa tccgaccgtc aatccttcta
      181 tgtccccgac cggcccgagc acggggttcc agtccggcgt gacgtcgtac accccggtcc
      241 acgatgaagc gagcccagcc atttcgtacg cggtaaaacg ttctgcaacc tgggcaccga
      301 cttcgccaac atagtcgagc gagatgtcgc cttgctcggt ctcaggggcg ttcagcgttt
      361 caccgaccac accttcggac acgagcatct ggctgccgcc gtagctacgg aaatagagca
      421 tgcccgccga gccgagatcc ttgaaggccg gcatgctgaa tgtatagggc gcggcgtcgc
      481 actccagagc gagcaccgta tggcgttccg gcttgacggg cagcggcacg ccaatccagc
      541 ccgcgagttc cggagtccag atgttctgcg tgctgatcag cgccccgcaa ctgaaggtgc
      601 cggccgatgt ttcgatgccg gtcacccgcc gcccatcacg cacgagtccg gtcacggtcg
      661 tgttctccat gatcttcacg ccgtgccggc gagctgagcg tgcaaagccg gttgcgacca
      721 gataggcatc ggcgaaaccc gcctcgggtt catagccgat caacgccgca tcgtcgaatt
      781 gagcgatcgg caaacgctcg cgggcttcag ccttcgagag cagttgcacc tctatgccca
      841 tgccttgctg agcgtcgagc gaagcttgca acggcgcgag cttatcgcct tcgggggcgc
      901 agatcatata gccgcatttc acgagaccgc atgaggcttc atcgtcgtcc acgtaagccg
      961 cgaaattgtt gaacgcgtgc catgacgaac gcgcgagttc cacgttctgc cgcacggaat
     1021 agtgcgtgcg taatagcccc gacgactgcg acgtcgtgcc cgcgccgatc gtgccgcgat
     1081 ccacgaccag cacgcttttg gcacccagcg cagcgagatg atgggcaacc gacgcgccga
     1141 tgaccccggc gccgatcacg atgaagtcgt agtggctcat ggcacttcct gaaagaagat
     1201 cgatgagcgg attgtaggaa gtggaaatac taagccgctt tgtattaggc aaacttatgc
     1261 agagcgcgcg gattaatgca gactttcggc ttcagctgca tcccggtgcc ggcgcggcat
     1321 gagcaggaag gttcaaacgg ctgcgatgca atcaatctct atgtcgaact tcccggccca
     1381 cgcgggaacg cagacgaaga ttcgagccgg cgggtcttgg ggaaaatagc gtacgtagat
     1441 cgcattgata gccgcaaact tttccaccga agtgcaatac acattgcact tcaaaacgtt
     1501 ctccaacgac gaccctgctg tttcgaggca aagcttcatt tgttcaagcg ccagctctgt
     1561 ctgacgttcg atcgacgcgc tgacaacttc gcccgtgtcc ggatcgaagg gagggaggcc
     1621 ggaaacgtac agggtatcgc catgtcgcgt catgacggag gctggcgctt tccatctttc
     1681 caggtacgag gataggggct cgacgcggat gatttgcctt ttcattagaa cgctcctgcg
     1741 gtgggggttt cggatgaaag cagagtaccg ctggctcgcc gatcagcgtt tcagtctgtg
     1801 atgaaatatg aaatccacgg gagcacgccg gagatgaggc gttcttcagc tcgctgcaat
     1861 gcgcgaaaaa agggcaacca actgcgcggg aagggtggcg ggggtgttca cgatacgaca
     1921 atactcacgg ccgacgatcc gccgcatata gtcggcgccg ccttcgtcga cggcgatccc
     1981 gcaggtcaca attcccgatc gccgcgcgtc ttccgcggca agctgtgcgt cgcgaaccag
     2041 atagtcgttg tcgaagacat cgatatccga tggcgttcca tccgtaatca cgacgatgac
     2101 gcggcgctcg ctcgtctcga gcgatatcag ggacgcggca tgccggatcg cggcccccat
     2161 gcgcgtggaa tagcgcgcgg tgcatgcctc gatcgatgca ctgctggtct cgtcgagggt
     2221 cgcatcgaaa tcgagcaggc ggtagtagtt cacgcactca cgcgtgttgg aagaaaaccc
     2281 gtgcgccgcg atacgatggt tcgccgacct tgccgcttgc accagcgctt gcgccgcctc
     2341 tttctccata tcgaggaacg agcgaccctc gcccggggcg atatcccctg tggatgcgga
     2401 cagatccagc agcaacaaca aactcatgga acgttgtctt gtgccgggac gcgtgaatac
     2461 gcgatgctcg ggcgagtg
//
LOCUS       DATGBK010000345         1818 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_189449, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000345 DATGBK010000000
VERSION     DATGBK010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189449"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1206)
                     /locus_tag="VKJ77_05055"
     CDS             complement(<1..1206)
                     /locus_tag="VKJ77_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007875548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44677.1"
                     /translation="MRLRRILFAVIVAFAITAHAAELRIGLAADVTSLDPHYLNVAPN
                     NNAAWHLFDALVHVDENARLVPGLALSWRAIDPTTWEFKLRKGVKFHDGSEFTGEDVI
                     FSLERAATLAASPGPFASFVKPIIAKKIVDPWTIRFKTAAPYAMLPYDLNSIFIVSKK
                     AATGASTEDFNSGKAAVGTGPYKLVRFARGDRIELVRNDTYWGEKSAWDKVTLRILPA
                     DTTRIAALLAGDLDAIENIPTADLTRLKADANFRLEQKVSWRTMLLHMDQYRDHPPHL
                     SDKSGKPLAKNPFKDARVRLAVSKAINRRAIVERVMEGYAIAAGNLVSPPVFGYVDAL
                     KPDIYEPETAKKLLAEAGYPDGFSLTLYAPNNRYVNDEKVVQAVAQMLARAGIQTKVE
                     TMPSSVYFGK"
     gene            1550..>1818
                     /locus_tag="VKJ77_05060"
     CDS             1550..>1818
                     /locus_tag="VKJ77_05060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009524016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043743 - LPPG:FO 2-phospho-L-lactate
                     transferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-L-lactate transferase CofD family
                     protein"
                     /protein_id="HMC44678.1"
                     /translation="MGTVVALAGQVGGAKLADGFRRLRGKDLAVIVNTGDDHEVFGLA
                     FSPDIDTMLYTLAEIASPAAGWEPAGETYALHDMLHRFGSEHRVR"
BASE COUNT          313 a          537 c          597 g          371 t
ORIGIN      
        1 cttgccgaaa tacacgctcg agggcatggt ctccaccttg gtttggatgc ctgcccgcgc
       61 cagcatttgc gccaccgcct gtaccacctt ttcgtcgttg acgtagcggt tgttgggtgc
      121 gtagagcgtt agcgagaagc cgtcgggata accggcttcg gcgagcagtt ttttcgccgt
      181 ttccggctcg tagatatctg gcttgagcgc atctacatag ccgaacacgg gtggagacac
      241 caggtttccc gcagcgatgg cataaccttc catcacccgc tccacgatgg cccggcggtt
      301 gatggccttg gacaccgcca ggcgcacgcg cgcatccttg aacggatttt tcgccagcgg
      361 cttgccggac ttgtcgctca aatgaggcgg atggtcgcgg tactggtcca tgtgcaacag
      421 catggtgcgc caggaaactt tctgctccag ccggaaattt gcgtcagcct tgagccgggt
      481 gagatcagcg gtgggaatgt tctcgatcgc gtccaggtcg cctgcaagca gcgcagcgat
      541 gcgcgtcgta tcggcgggca ggatgcgcag cgtgaccttg tcccaggccg acttttcccc
      601 ccaataggta tcgttgcgga cgagttcgat gcggtcgccg cgggcaaagc gcacgagttt
      661 gtacgggccg gtgccgacgg ccgccttgcc gctgttgaaa tcctcggtgc tcgcgccggt
      721 ggctgccttc ttcgacacga tgaatatgga gttcaggtcg tagggcagca tggcgtaggg
      781 cgcggcggtc ttgaaccgta tcgtccacgg atcgacgatt ttcttggcga tgatgggttt
      841 gacgaagctg gcgaacggcc ccgggctcgc ggccagcgtc gccgcgcgct ccagcgaaaa
      901 gatcacgtct tcgcctgtga actccgagcc gtcgtggaac ttgacgcctt tgcgcagctt
      961 gaattcccag gtggtcggat cgatggcgcg ccaggacaag gcgaggccgg gaacgaggcg
     1021 cgcattctca tccacgtgca ccagtgcatc gaataaatgc caggcggcgt tgttgttggg
     1081 cgcgacgttg aggtaatgcg gatcgagcga agtcacgtcg gcagccaggc cgatgcgcaa
     1141 ctcggcggcg tgggcggtga tcgcgaacgc gacgatgact gcaaacagaa tgcgtctaag
     1201 ccgcatgtct tggtcctttt cgccacctgc caaggtgggc tggcggcgca gtcgacgagc
     1261 cggtttgctt gctgcaccat tccgccatcc gccgcgctcc ggtcacttcg gtgaggaggg
     1321 gaaggtagca acggttagcg cggcctgtac tgcgcccagc ccgcgcacag ttttttatcc
     1381 gcgcgatcct tttcctgcag cgattatagc ggacaggctc tgcgcgggtg atggaaggca
     1441 gcgcgtcgct gcacagctac aaccgcgagt tggccctggg caataccaac cgcgtgcacg
     1501 ttcgctggcc gcgtcggcta caattcgggg atcaatggtg gggtggacaa tgggaacagt
     1561 cgttgcgttg gctggtcagg tcggcggcgc aaagctcgcc gacgggttcc ggcgcctgcg
     1621 cggcaaggac ctcgccgtca tcgtcaatac cggcgacgac catgaggtct tcggtctggc
     1681 gttctcacct gacatcgaca ccatgctgta cacgctggcc gagatcgcaa gtccagcggc
     1741 tggctgggag ccggccggcg agacatacgc tttgcacgac atgctgcacc gttttggctc
     1801 ggagcatcgg gtccgtat
//
LOCUS       DATGBK010000346         1575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_96735, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000346 DATGBK010000000
VERSION     DATGBK010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96735"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..391)
                     /locus_tag="VKJ77_05065"
     CDS             complement(<1..391)
                     /locus_tag="VKJ77_05065"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012366351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HMC44679.1"
                     /translation="MVVTEQSEASHAGLEVLRTGGNAIDAAVAVGYALAVVNPCCGNI
                     GGGGFMLIHRAKGGDTFINFREKAPLRATRDMYLDSAGNVVPGRSTRGWLAAGVPGTV
                     MGLERARTEYGTMTRDQLMASAISLARN"
     gene            634..>1575
                     /locus_tag="VKJ77_05070"
     CDS             634..>1575
                     /locus_tag="VKJ77_05070"
                     /inference="COORDINATES: protein motif:HMM:NF013318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HMC44680.1"
                     /translation="MESVSLEIGGRTLIIETGELAKQANGSAVVRYGDQNVMIAAVTA
                     SEKPREGIDFFPLTCDFEEKMYAAGKIPGGYIKREGRPSEHGTLSARQIDRPIRPLFP
                     EGFQNDVQIITTVLSIDPELDNDVIAVCAAGAALAVSDIPFDKNVAAVRVGRDENGKY
                     IINPTLPQYETGGMEIVVAGTSDAVMMVEGGGNEMSEEDFLGAVEFAHTEIKKIVKAI
                     DQLAKKAGKKKRVYPLQKVDAKLKAWVEKNFKKDVAKAMRIIEKGERNAAFDKLSKDA
                     AIAKCGPKDTEILAMLTDKSNKEFDKSIKSMEEEELRI"
BASE COUNT          392 a          470 c          427 g          286 t
ORIGIN      
        1 cattgcgggc aagtgaaatt gccgacgcca tcaactgatc gcgcgtcatc gtgccgtact
       61 ccgtgcgcgc tcgctccagt cccatcaccg tgcccggcac accggccgcc agccaaccgc
      121 gcgtgctgcg acccggaacg acgttgccgg ccgaatcgag atacatgtcg cgcgttgcgc
      181 gcagcggcgc tttctcgcgg aaattgataa acgtgtcgcc gcctttggcg cggtgaatga
      241 gcatgaagcc gccgccgccg atattgccgc agcacgggtt caccacggca agcgcatagc
      301 cgaccgccac cgcggcatcg atcgcattgc cgccagtccg taacacctca agacccgcgt
      361 ggctggcttc ggactgctcg gttacgacca tgccgcggtt tccagaggcc ggagccgccg
      421 cgaacgccgc cgtcgaggtg acggtaagca agaaagcgct caaaatcagg cgtgcgacca
      481 cggatttaac ctcacgaaca ttcagattat cgcttaaaac gaggccattc accaaaaacg
      541 gccgaatttg tccccgttca tttatagatg taagagaaca aaaagaccgt ctgccccttc
      601 cgggcgggcc gcacaaacta ggagaatttt ttgttggaat ccgtctcgct cgagatcggg
      661 ggtcgcaccc tcatcatcga gaccggcgag cttgcgaagc aagcaaatgg tagcgcagtg
      721 gttcgctatg gcgaccaaaa cgttatgatc gccgctgtta ccgcctccga gaaacctcgt
      781 gaaggcatcg acttctttcc cttaacctgc gacttcgaag agaagatgta cgctgcgggc
      841 aaaatccccg gcggttacat taagcgcgaa ggccgtccct cagaacacgg aacgctctcg
      901 gcacgacaga tcgatcgccc catccgtccg ttgtttcccg aaggcttcca aaacgacgtt
      961 caaatcatca cgaccgtgct gtcgatcgat cccgaactcg acaacgacgt gatcgccgtt
     1021 tgcgccgccg gcgcagcgct cgccgtctcc gatattccgt tcgacaaaaa tgtcgcagcg
     1081 gttcgcgtcg ggcgcgatga gaacggcaag tacatcatca atccgaccct gccgcagtac
     1141 gaaaccggcg ggatggaaat tgtcgtcgcg ggcacgtctg acgccgtcat gatggttgaa
     1201 ggcggcggca acgaaatgtc cgaggaagat ttcttgggcg ccgttgagtt cgcacatacc
     1261 gaaatcaaga agatcgtcaa agcgatcgac cagcttgcca aaaaagccgg caagaaaaag
     1321 cgcgtctatc cgcttcaaaa agttgatgcg aagctcaaag cctgggtcga gaagaacttc
     1381 aaaaaagacg ttgccaaggc catgcgcatc atcgagaagg gcgaacgcaa cgcagcgttc
     1441 gataaacttt cgaaggatgc agcgatcgca aaatgcggtc ccaaagatac cgaaattctc
     1501 gccatgctta ctgacaaatc gaataaagaa ttcgacaagt cgatcaagtc catggaagag
     1561 gaagaactgc gcatc
//
LOCUS       DATGBK010000347         2078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_304967, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000347 DATGBK010000000
VERSION     DATGBK010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304967"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..512
                     /locus_tag="VKJ77_05075"
     CDS             <1..512
                     /locus_tag="VKJ77_05075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HMC44681.1"
                     /translation="LEYRISARGLIGFQSEFLTLTRGTGLMSHTFDSYQPVREGGVGE
                     RRNGVLISQDDGAAVAYALWKLQDRGRMFVSPGDALYEGMIIGIHSRDNDLVVNPIKG
                     KQLTNVRSSGTDEAVRLVPPIQMSLEYAVEFIDDDELVEVTPQSIRLRKRYLKEHERR
                     SASRKGAVD"
     gene            826..>2078
                     /locus_tag="VKJ77_05080"
     CDS             826..>2078
                     /locus_tag="VKJ77_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HMC44682.1"
                     /translation="MMKNSQLNSYLFGGNAPYVEEQYEAYLDNPASVPETWRTYFDAL
                     QNVPASDGTNHNDVAHGPIVESFAQRAKSNGFVPRESTGDLATARKQVYVQSLIGAYR
                     FLGSQWANLDPLKRRERPAIPELEPAFYDFTEADMDQMFHAQNLYFGFEQASLREIVK
                     ALRDTYCGTIGAEFMYISDPEQKRWWKEKLESIRSTPNFSPDKKKHILQRLTASEGLE
                     RFLHTKYVGQKRFSLEGGESFIASMDEVVRHAGAAGVQEIIIGMAHRGRLNVLVNTLG
                     KMPADLFAEFEGKHVDDLPAGDVKYHKGFSSDVSTDGGPVHLSLAFNPSHLEIVNPVV
                     EGSAKARMDRRGDLDGMQVLPVQIHGDAAFAGQGVVMETLNLAQTRGYGTHDTLHIVI
                     NNQIGFTTSDPRDARSTLYCSDVAK"
BASE COUNT          443 a          591 c          624 g          420 t
ORIGIN      
        1 gtctcgagta tcgtatttcg gcacgtggcc tgatcggctt ccagtcggaa ttcctgacgc
       61 tcacgcgcgg cacgggcctg atgagccaca cgtttgattc gtatcagccg gtgagggaag
      121 gcggagttgg cgaacgtcgt aacggcgtgc tgatttcgca ggacgacggc gcggctgtcg
      181 cctacgcatt gtggaagctg caggatcgcg gccgcatgtt cgtgtcgccg ggcgatgcac
      241 tgtacgaagg catgatcatc ggcattcata gtcgcgacaa cgacctcgtt gtgaacccga
      301 tcaagggcaa gcagttgacc aacgtgcgtt cgtcgggaac ggacgaagcg gtgcgcctcg
      361 tgccgccaat ccagatgtcg ctggaatacg cggttgaatt tatcgacgac gacgaactgg
      421 tcgaagttac gccgcaatcc atccgtctgc gtaagcgtta cctgaaggaa cacgagcgtc
      481 gcagcgccag ccgtaagggc gcagtggact aaattcacgc gagtcagcgt gttgagaaag
      541 ccgccttcgg gcggcttttt tcttgcatag gcggcacata agcgccgggt gtttaatacg
      601 tcccttattc gcgaaaggtc cacgaaagcc cgctggataa gcatctcggc tgcgaccatc
      661 ggcgcgtcga cgcattgatc tgtgctatgc tagagaaagt attgccagtt ttaggtcctt
      721 ccaagcagac ttgattcgcg caatccgcta aacggtcagg ccgtgttgcg gaaggttgag
      781 taacccgcta tttctcgaga aactcgaaga aaggtgagcg taaaaatgat gaagaattcc
      841 cagctgaact cctatttgtt cggcggtaat gccccgtatg tcgaagaaca gtacgaggca
      901 tatctcgata atcccgcgtc agtgcccgag acctggcgta cctatttcga tgcgttgcag
      961 aacgtgcctg catcggatgg gacgaatcac aacgacgtgg cccacggccc gatcgtcgaa
     1021 tcattcgcgc aacgcgcgaa atcgaacggc ttcgtgccgc gcgaaagcac tggcgatctg
     1081 gcgaccgcgc gcaagcaggt ctacgtccag tcgctgattg gcgcttaccg tttcctcggc
     1141 tcccaatggg ccaacctcga tccgctgaag cgccgcgagc gcccggccat tcctgagctc
     1201 gaacccgcgt tctacgactt cactgaagcc gacatggatc agatgttcca tgcgcagaac
     1261 ctgtatttcg gctttgagca ggcatcgctg cgcgagatcg tgaaggcatt gcgtgacacg
     1321 tactgcggca cgatcggcgc cgagttcatg tacatcagcg atccggaaca gaagcgctgg
     1381 tggaaagaga agctcgaatc gatccgttct accccgaatt tctcccccga caagaaaaag
     1441 cacattcttc agcgcctgac ggcgtccgaa gggcttgagc gttttctgca caccaagtac
     1501 gtcggccaga agcgcttctc gctggaaggc ggcgaaagct tcatcgcttc gatggacgaa
     1561 gtcgtgcgcc acgcgggcgc tgccggcgtg caggaaatca ttatcggcat ggctcaccgc
     1621 ggacgtttga acgttctcgt gaacacgctg ggcaagatgc ctgctgacct gttcgccgaa
     1681 ttcgaaggca agcacgtcga tgacctgccg gccggcgacg tgaagtatca caagggattc
     1741 tcgtcggacg tttcaaccga cggcggcccg gtgcatttgt cgctcgcgtt caacccgtcg
     1801 caccttgaaa tcgtgaaccc ggtggtcgaa gggtcggcga aggcacggat ggatcgtcgc
     1861 ggcgacctcg acggcatgca agtgctgccg gtccagattc acggcgacgc ggcgtttgcc
     1921 ggtcagggcg tggtgatgga aacgctgaac ctcgcgcaaa cgcgtggtta cggcacgcac
     1981 gacacgctgc acattgtcat taacaaccag atcggcttta cgacgtccga cccgcgcgat
     2041 gcgcgctcga cgctgtattg ctcggacgtg gcgaagat
//
LOCUS       DATGBK010000348         3040 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_3790, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000348 DATGBK010000000
VERSION     DATGBK010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3790"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..990)
                     /locus_tag="VKJ77_05085"
     CDS             complement(25..990)
                     /locus_tag="VKJ77_05085"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HMC44683.1"
                     /translation="MALPAALQHLALPVIASPMFIVSYPELVLAQCKAGIVGSFPALN
                     ARPAELLDEWLTQIGEGIEAHKAANPGAPVGPVAVNQIVHHSNARLEADVRVCVEHRV
                     PIFITSLRAPVKEMIDAVHSYGGIVLHDVINLRHAEKALEAGVDGLILVAAGAGGHAG
                     MTSPFALVGEVRRIFDGPIALSGAIANGGSILAAQAMGADFAYIGTRFIATREAHALE
                     DYKTAIVGSKAADIIYTNLFTGVHGNYIRQSILNAGLDPDALPASDKAAMNFGDSAIK
                     AKAWKEIWGAGQGVGLMDDVPTVAELVSRLKLEYDDAKTRLGISR"
     gene            1298..2191
                     /locus_tag="VKJ77_05090"
     CDS             1298..2191
                     /locus_tag="VKJ77_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006024298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC44684.1"
                     /translation="MPFEDYEPFTFDAAGVELFGMKGGNGPPLLLLHGHPQTHEIWHR
                     LAGALAQHFTVIATDLRGYGASAKPPSDAQHTPYSKRAMAADQVAVMRHFGFERFMVC
                     AHDRGARVAHRMALDFPQAVDRLMLLDIAPTLAMYEATDRAFATAYFHWFFLIQPEPL
                     PELLIGAHPDAYVERVMGSRHAGLAPFAPHALQAYRDALRQPGAVHAMCEDYRASASI
                     DLEHDRADIECGKRLACPLRVLWGQEGVIEQCFEPLTEWRRVARDVSGRALPSGHYIP
                     EEVPDELLAEMLAFFEATEAA"
     gene            complement(2449..>3040)
                     /locus_tag="VKJ77_05095"
     CDS             complement(2449..>3040)
                     /locus_tag="VKJ77_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC44685.1"
                     /translation="TGQTCERFGFTGTIAPGATLQLGGLDWSVLGAPGHDPHSLMLYC
                     AEERLLISADALWENGFGVIFPELEGESGFAEQRAVLDLIATLDVRAVIPGHGAPFAD
                     VSKALDIAFSRIDYLRADPVRNAKNALKVLIVFKLMELRSMPVSELLLLVDNAGAMRA
                     AANLISDDRPGLVRKYLAELATSGVLRMEGETAKIG"
BASE COUNT          574 a          949 c          917 g          600 t
ORIGIN      
        1 gaaccagccg ccaacaggac tgctttatcg cgaaataccc aagcgcgttt ttgcatcgtc
       61 gtattcgagc ttgagccgcg acacgagttc cgccaccgtc ggtacatcgt ccatcaggcc
      121 gacgccttgt cctgcgcccc agatctcttt ccatgccttg gctttgatcg ccgagtcgcc
      181 gaaattcatg gctgctttgt ccgatgccgg cagcgcgtct ggatcgagtc cggcgttgag
      241 aatgctctga cgaatgtagt tgccgtgcac gccggtaaag aggttcgtat agatgatgtc
      301 ggcagctttc gaccccacga tcgcagtctt gtagtcttcc agcgcatgcg cctcgcgcgt
      361 ggcaataaaa cgtgtgccga tatacgcgaa atccgcgccc atggcttgcg cggcgagaat
      421 cgagccgccg ttggcaatgg ccccggacaa cgcgatcggg ccatcgaaaa tacgccgcac
      481 ttcgcccacc agcgcgaacg gcgaggtcat gcccgcgtgt ccgccggcac ctgctgcaac
      541 caggatcagg ccatcgacgc ccgcttccag cgccttctcg gcgtgccgca ggttgatcac
      601 gtcgtgcagc acgatgccgc cgtagctgtg cacggcgtcg atcatctcct tgaccggcgc
      661 gcgcaggctc gtgatgaaga tcggcacgcg atgttccacg cacacccgta cgtccgcctc
      721 aagccgcgcg ttcgagtggt gcacgatctg gttgacggcg accggaccga ccggtgcgcc
      781 cggattcgcc gccttatgcg cctcgattcc ttcgccgatc tgcgtgagcc attcatcgag
      841 caactcggct ggccgcgcgt tcagcgcagg aaacgagccg acgatccccg ccttgcattg
      901 cgcgagcacg agctccggat agctgacgat gaacatcggt gaagcgatga cgggtagcgc
      961 aaggtgttgc agagcggcgg ggagtgccat gacacgagtc tcctgattga atgtgaaagt
     1021 cggcaatgcg cgcgtccatc tgtcgtggga tcacaataac tgcgctgcaa ctgcgcgata
     1081 accgcgcatg gcgattgctg ccggacttgg gcgaagctca agcgcatgca ctgaaagcat
     1141 gcgaacgatc gttcgattat aggcgaatct tccgatgtgc gatcaccagg gacattggaa
     1201 gaagtcttca gcttctacga aagcgcctgc cagcaagcag tttagtatcg acgaggacgc
     1261 ctacaatgct tttcctgtca cgctgaaaat tcacgccatg ccgttcgaag actacgagcc
     1321 gttcaccttc gatgccgcgg gcgtcgaact cttcggcatg aagggcggta acgggccgcc
     1381 gcttctgctg cttcacggcc acccgcagac acatgagatc tggcatcggc tggctggcgc
     1441 gctggcgcag catttcaccg tgattgcgac cgatctgcgc ggttacggcg catcggcgaa
     1501 accgcccagc gacgcgcagc acacacccta ttcgaaacgc gcgatggccg ccgatcaggt
     1561 cgcggtcatg cggcacttcg gctttgagcg cttcatggtc tgcgcccatg atcgcggcgc
     1621 gcgggtggcg caccggatgg cgctggattt tccgcaggct gtcgaccgcc tgatgctgct
     1681 cgacatagcg ccgacgcttg ccatgtacga ggccaccgat cgcgccttcg ccaccgccta
     1741 ttttcactgg ttcttcctga tccagcccga gcccttgccg gaattactga taggcgcgca
     1801 tccagacgcg tatgtcgagc gtgtgatggg cagccgccac gcgggtctcg cgccgtttgc
     1861 accgcatgcg ttgcaggcat accgcgacgc gttgcgtcag ccgggcgcag tgcatgcaat
     1921 gtgtgaggac taccgggcgt cggcgagcat cgatctcgag catgatcgag cggatatcga
     1981 gtgcggcaag aggcttgcgt gtccgctgcg ggtgttgtgg gggcaggagg gcgtgatcga
     2041 acaatgcttc gagccgttga cggaatggcg tcgtgtcgcg cgcgatgtca gtggccgagc
     2101 gttgccttcg ggccactata ttccggaaga agtacccgat gaattgcttg cggagatgct
     2161 cgcgtttttc gaggcgaccg aggccgcata agggtgggac gcgtgcgcgt catggcgcgt
     2221 tcagctggct gttataagtc tgtagggaaa gcaccgatgc gtcccaaaag caggcgcgct
     2281 acgattcagt cggcgctgat cacgtcaaca aaattccgcc gcttgggcct ggccgttcga
     2341 cgataaatcg atagctgaca agcggctttc tttttggctg tttcaggttg ttgcatgtcg
     2401 tgcccgcggg ttcggtcaac gcgttcaggc aacgttcagg caacgcattc agccgatctt
     2461 cgccgtctcc ccttccatcc tcagcacgcc gctcgttgcc agttcggcga gatacttgcg
     2521 cactaatccc ggacgatcat cggatatcag gttagcggcg gcacgcatgg ccccggcatt
     2581 atctacaagt agcaacaact cgctgaccgg catcgagcgc aactccatca gcttgaacac
     2641 gatcagcact ttcagcgcat tcttcgcgtt gcgcaccgga tcggcacgca gataatcaat
     2701 gcgcgaaaaa gcgatatcca gcgccttcga tacatccgcg aacggcgcgc catggccggg
     2761 aatcaccgcc cgcacgtcca gcgtggcgat caggtcgagc accgcgcgct gttccgcgaa
     2821 gccgctctcg ccttccagtt cgggaaagat cacgccgaag ccgttttccc acagcgcgtc
     2881 ggcgctgatc agcaggcgtt cttcagcgca atacaacatc agcgaatgcg gatcgtgacc
     2941 gggtgcgccg agcaccgacc agtcgaggcc gccaagctgt agcgtcgccc ctggcgcaat
     3001 cgtgccggtg aacccgaagc gctcgcaggt ctgcccggtc
//
LOCUS       DATGBK010000349         1852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_304997, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000349 DATGBK010000000
VERSION     DATGBK010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304997"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VKJ77_05100"
     CDS             <1..292
                     /locus_tag="VKJ77_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44686.1"
                     /translation="PWQSFRHVVLPIIGPSVIGVGMFGFTLSWDEIARTSQAIGDQNT
                     LPLELQGLTTSVTTPVIYALGTMTTMLSLTVMVVGLLTVQWLSRRRSRALAV"
     gene            complement(320..1561)
                     /locus_tag="VKJ77_05105"
     CDS             complement(320..1561)
                     /locus_tag="VKJ77_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HMC44687.1"
                     /translation="MNDRHSFSTDSGTPGTFSIACPAVLPLSSILPEEPLLMMGAGPV
                     PIPDAVAKANGVVINHLGSTMAAVIGQVKTMARYVFQTESKWVMGVAGPGSAAMEMAI
                     TNLAWKGSRVLCICNGFFSERMAEMARRTGAQVETLNVVDGTAADTQQAADAIDRFRP
                     EIVTIVHGETSNTVWNRSLESIASVARAAGALVIVDAVCTLSTMPLPMDAWGIDAVIT
                     GGQKGLSSIPGVSLLAFSEPAWQRIMTRPVPPTHWCLDAALATNFWHNASYHYTAPVS
                     GVLALHEALRLVCAETLERRFARHQRCSNALQAGVEALELKLYVPKPSRLNSVVGIAL
                     PQGISGSDVCAHISRHHHVEIAGSFGAPIVRIGQMGEQCREHHLFRTIHALGRTMIDL
                     GVPVDLPAGVAALERSLSAAL"
     gene            complement(1636..>1852)
                     /locus_tag="VKJ77_05110"
     CDS             complement(1636..>1852)
                     /locus_tag="VKJ77_05110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2917 domain-containing protein"
                     /protein_id="HMC44688.1"
                     /translation="TVWLTIEGESEDWWLREGETLELAPRSKVWISTSEPNSRFVLAS
                     APVFSPTRRFAFYWLLIRFGQRRTRAM"
BASE COUNT          349 a          589 c          577 g          337 t
ORIGIN      
        1 gccctggcag agctttcgcc atgtggtgtt gccgatcatc gggccgtctg tgattggggt
       61 cgggatgttt ggcttcacgc tgtcgtggga cgagatcgcg cgcacgtcgc aggcgatcgg
      121 cgaccagaac acgctgccgc tggagcttca ggggctcacg acttccgtca ccacgcccgt
      181 gatctacgcg ctcggcacga tgaccacgat gctgtcgctg acggtgatgg tggtgggtct
      241 tctgacggtt cagtggctga gccgtcgacg ttcgagggcg ctcgcggtct gactccgcta
      301 aaagcgctca cgccctctct tataaagccg ccgataacga ccgctccagc gcggccacgc
      361 cggcgggaag atccaccggc acgccgaggt cgatcatcgt ccggccaagc gcatggatgg
      421 tcctgaagag atgatgctcg cggcactgct cgcccatctg gccgatccgt acgatcggcg
      481 cgccgaatga acctgcaatc tcgacatgat gatggcgcga gatatgggcg catacgtcgg
      541 aaccgctgat gccctgcggc aacgcaatcc ccacaaccga attcagccgg ctcggcttcg
      601 gaacatagag cttcaactcc aacgcttcaa cgcccgcttg cagcgcgttc gaacaccgct
      661 gatggcgcgc gaaccggcgc tcgagcgtct ccgcgcacac cagtcgcagc gcctcatgga
      721 gcgcgagcac gcccgacacc ggcgccgtgt aatggtagga cgcgttgtgc cagaagttcg
      781 ttgccagcgc cgcgtcgagg caccagtgag tgggcgggac cggacgcgtc atgatgcgtt
      841 gccacgccgg ttcagagaac gcgagcagcg agaccccggg aatcgatgac agccctttct
      901 ggcccccggt gatcacggcg tcgatacccc atgcgtccat cggcagcggc atggtgctca
      961 gcgtgcagac cgcgtcgaca atcaccagcg cgccggcggc gcgggcgact gaggcaatcg
     1021 attcgaggct gcggttccag acggtattcg atgtctcgcc atgcacgatc gtcacgatct
     1081 ccggacgaaa ccggtcaata gcgtccgccg cttgctgcgt atccgcggct gtgccgtcga
     1141 ccacgttcag cgtttccacc tgagcgccgg ttcgcctcgc catctctgcc atgcgctcgc
     1201 tgaagaagcc gttgcaaatg cagagcacgc gcgagccttt ccatgcgaga ttcgtgatgg
     1261 ccatttccat ggcagctgat cccggtcccg ccacgcccat tacccatttc gattcggtct
     1321 ggaacacata ccgggccatg gtcttgacct gaccgatgac cgcggccatg gtcgagccaa
     1381 gatggttgat cacgacgcca ttggctttgg ccacggcgtc gggaatgggt acggggccgg
     1441 cgcccatcat caacagaggc tcttcgggaa gaattgaaga gagcggcagg accgccggac
     1501 acgcgatgct gaatgtgccc ggcgtgccgg agtctgtgga gaaggaatgt cggtcgttca
     1561 tctgggctcg ttcaataagg gcgttgttgg gtggctaagc gaccggccgt ctggccgaac
     1621 acggctgcaa cccgctcaca ttgcccgcgt cctgcgttgg ccaaaacgga tcagcaacca
     1681 gtagaaagca aatcgccgag tgggcgagaa taccggtgcc gaggccaaaa cgaaacggct
     1741 attcggctcg gacgtgctga tccagacctt cgaacgcggt gcgagctcaa gcgtttcgcc
     1801 ttcgcgcaac caccagtctt cggattcgcc ttcaatggtc agccacaccg ta
//
LOCUS       DATGBK010000350         2096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_212414, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000350 DATGBK010000000
VERSION     DATGBK010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212414"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1651
                     /locus_tag="VKJ77_05115"
     CDS             <1..1651
                     /locus_tag="VKJ77_05115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HMC44689.1"
                     /translation="AITLVEVFTKRAGLWFDPSAAPVFTRTIEIDLSTIGMHVAGPRR
                     PQDLLDCSATFAALEALAFVPKANVPGMPKHPVAIAAITSCTNTSDPALLIAAGLVAR
                     KARALGLKVPGWIKTSLGPGSPAAALYLERAGLIDDLSALGFDIVGYGCTTCIGNSGA
                     LTEPVKAALAAKAIYPVAMLSGNRNFPGRIHPDLDLGFIMSPPLVVAFALSGDAQADL
                     AHFPLQTTPDGTPVFLSDLWPTREEVATLLEHAADPADYPRAFAIASENPAWHGIDAP
                     ATAQYPWDPQSNALRRPPFAAVTEGTQLGTYSAYPLLVLGDDITTDHISPASAIPKDS
                     FVADFLVAHGDDPDDLNVFASRRGNWEVMIRAAFYNKSLVNLLQPGAPVAHTLHVPSG
                     DIKPIHEVAAQYRAQGDAVVLIAGERYGTGSSRDWAAKGQRLLGIRAVLAVSFERIHR
                     SNLIGMGILPLRWPAGVSPATLNIQPGDKVEVNAPPDTLAPRCRVDVKIVRADASVES
                     YEVTAAVETQLEVTLLRCGGVIRLILRKTLAAQGKKQKHER"
     gene            1641..>2096
                     /locus_tag="VKJ77_05120"
     CDS             1641..>2096
                     /locus_tag="VKJ77_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012406049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HMC44690.1"
                     /translation="MNDRSIAAQIVEWIRSEEMEVGSHLPAQKIADLLRLSRSPVNEA
                     LSLLHEKGVLSRERNRGFFVADPAIELFTEADDTIGLSGPDVVTSAYFRIADDRLKSA
                     LPDEVSEQMLKTRYGLTATQLTAVLGRIAQEGWAERKPGYGWQFSAMLTT"
BASE COUNT          399 a          667 c          639 g          391 t
ORIGIN      
        1 tgcgatcacg ctcgtcgaag tgttcaccaa gcgggcgggc ctgtggttcg atccttctgc
       61 cgcgccagtt ttcacgcgca ccatcgagat cgacctgagc acgatcggca tgcatgttgc
      121 cgggccgcgg cgccctcagg atctactcga ttgttcggct acgttcgcgg cactcgaagc
      181 gttagcgttc gtgcctaagg ccaatgtgcc tggaatgccg aagcaccctg tcgcaatcgc
      241 tgccatcacg agttgcacga acacctccga ccccgccttg ctcatcgccg cagggctcgt
      301 ggctcgcaaa gcgcgcgcgc tgggcctaaa ggtaccgggc tggatcaaga cctcgcttgg
      361 gcccggctcg cccgcagcgg cgttgtatct ggagcgcgcc ggactcatcg acgatctgtc
      421 ggcgctgggt ttcgatatag tgggttatgg ctgcaccacg tgcatcggca actctggcgc
      481 gctcaccgaa cccgtgaaag ccgcgctggc cgccaaggcc atctatccgg tagcgatgtt
      541 gtccgggaac cggaatttcc ccggccgcat tcatcccgat ctggatctcg gcttcatcat
      601 gtcgccgcct ctggtcgttg catttgcgct gtcaggcgac gcgcaagccg acctggccca
      661 tttccctctg cagaccacac cggacggcac accggtcttc ctgagcgatc tatggccaac
      721 ccgagaagag gttgcgacgc tgcttgaaca cgcggcggac ccggccgact atccgcgtgc
      781 gttcgccatc gccagcgaga atcccgcgtg gcatggcatc gatgcccccg ccaccgcaca
      841 gtacccgtgg gacccacaat cgaacgcgtt aagacgtccg ccatttgcgg ccgtgaccga
      901 aggcacgcag ttgggaacgt acagcgccta cccattgctc gtcctcggcg acgacatcac
      961 gaccgaccat atctcgcccg ccagcgccat tccgaaggac agcttcgtcg cggacttcct
     1021 cgtcgcccac ggcgatgacc ccgacgacct gaacgttttc gcatcgcgtc gcggcaactg
     1081 ggaagtcatg atccgcgcgg cgttctataa caaatcgttg gtcaacctcc tgcaacccgg
     1141 cgcgccggtc gcccacacgc tgcacgttcc aagcggcgac atcaagccga ttcacgaagt
     1201 cgccgcgcag tatcgagcgc aaggtgatgc tgtcgtgctc atcgcaggcg aacggtacgg
     1261 cacaggttct tcccgcgact gggcggcgaa gggccagcgc ctgcttggaa ttcgcgccgt
     1321 gctggcggta agctttgaac ggattcaccg ctcgaacctg atcggcatgg gcatcttgcc
     1381 gcttcgatgg ccggcaggcg tcagccccgc cacgctgaac atccagcccg gtgataaggt
     1441 cgaagtgaac gcgccgcccg acacgctcgc gccgcgttgc agggtcgatg taaagatcgt
     1501 gcgggcggat gcaagcgtcg aatcatacga ggtgacggcg gctgtcgaaa cgcaactgga
     1561 agttacgttg ctgcgctgcg gtggcgtcat ccggcttatt ttgcggaaga ccctggccgc
     1621 tcaaggtaaa aaacagaagc atgaacgata gatcgatagc cgcccaaatc gtcgagtgga
     1681 tcaggtccga agagatggaa gtgggcagtc atctgcccgc gcagaagata gcggaccttc
     1741 ttcggctgtc ccgctcgccg gtcaacgaag ccctctcgct gctgcatgaa aagggcgtac
     1801 tgagccgcga gcgcaatcgc ggatttttcg tggcggaccc tgccattgaa ttgttcacgg
     1861 aagccgacga tacgattggt ttgagcggcc cggacgtggt cacgagcgcg tatttccgta
     1921 tagcagatga tcggctgaag agtgcgttgc ccgacgaggt gtcggagcaa atgctaaaga
     1981 cccgctacgg attgacggcg acccaactca ccgcagttct gggtcgcata gcgcaggagg
     2041 gttgggccga acgcaagccg gggtatgggt ggcaattctc ggccatgctg acgacg
//
LOCUS       DATGBK010000351         1704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_328122, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000351 DATGBK010000000
VERSION     DATGBK010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328122"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..>1704
                     /locus_tag="VKJ77_05125"
     CDS             78..>1704
                     /locus_tag="VKJ77_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease catalytic domain-containing
                     protein"
                     /protein_id="HMC44691.1"
                     /translation="MNVFFEESGSFKAGAVLSKQNDAFQVELPGGRRAKVRAKDVLIE
                     FEKPNAADLMQQADAIAQDIDLDFLWECAPEEEFPFAELGADYFGDKFGATERAALVL
                     RMHGSPVYFRRKGRGQYQRAPQEQLQMALAGLEKKRQLALVQAGYEAELVAGKLPDAL
                     VGKAIGLLTKPDKNSIEYKALEAAAATRGISQARLMLEVGGIPSARALHEARFLSEFF
                     PHGTGFAPVTVPPLPDDLPEADVQAFSIDDVTTTEIDDAFSVEHLADGRVRVGIHIAA
                     PALGISRGDMIDAIARTRLSTVYMPGDKITMLPDSVVEAFTLAEGGLRPALSLYIIVN
                     RETQEIVATETRAERVFVKSNLRHNHLDEHVTEESLAAGSGEYAHKDDIAVLWPLAQA
                     LFEKRQEARAGYGLRREVQRNNDFNFYVEGEHITITPRRRGSPLDLIVAELAILANSS
                     WGAFLNDHSVPGIYRSQRGFGAPGPKRTRMQTTPAPHEGLGVAQYAWSTSPLRRYVDL
                     VNQWQLLACVRHGVTAALVAPFKPKDADLFAVVQ"
BASE COUNT          320 a          483 c          576 g          325 t
ORIGIN      
        1 ttgtgggcct ggcgctttgt gcgggacgcg aacccgacag gacgccacgc cgaccaacag
       61 tctttcgaga gtattgagtg aacgtttttt ttgaggaatc aggtagtttc aaggccggcg
      121 ccgttctgtc caagcagaac gatgcgtttc aggtcgagtt gccgggcgga cggcgcgcga
      181 aggtgcgcgc caaagatgta ttgatcgaat tcgagaaacc gaacgcagcc gatctgatgc
      241 aacaggccga tgccattgca caggacatcg atctcgattt cctgtgggag tgcgcgccgg
      301 aagaagaatt tccgttcgct gaactgggcg cggattattt cggcgataaa ttcggcgcca
      361 ccgagcgcgc cgcgctcgtg ctgcgcatgc acggttcgcc ggtgtatttc cgccgcaagg
      421 ggcgtgggca atatcaacgc gcgccgcagg aacagctgca aatggcgctg gccgggctgg
      481 aaaagaaacg gcaactggcg ctggtgcaag cgggttacga agcggaactg gtcgcgggga
      541 aactgccgga tgcgttggtg ggtaaggcga tcggcttgct gacgaagccg gacaagaact
      601 ctattgaata taaggcgctc gaagccgccg ccgctacgcg cgggatttcg caagcgcggc
      661 tgatgctgga agtgggcgga attccgtcgg cgcgtgcgct gcacgaagcc cggttcctgt
      721 cggagttttt cccgcacggg acgggcttcg cgcctgtcac ggtgccgccg cttcccgacg
      781 atctgccgga agcggacgtg caggcgtttt ctatcgatga cgtcaccacc actgaaattg
      841 atgacgcgtt ctccgtcgag catctcgccg atggccgcgt gcgcgtcggt attcacatcg
      901 cggcgccggc gctggggatc tcgcgcggcg acatgatcga tgcgatcgcg cgcacccgct
      961 tgtccaccgt gtacatgccc ggcgacaaga tcacgatgct gccggacagc gtcgtggaag
     1021 cgttcacgct ggctgaaggc ggattgcggc cggcgttgtc gctgtacatc attgtgaatc
     1081 gggagacgca ggaaattgtt gcgaccgaaa cgcgcgccga gcgtgtgttc gtgaagagca
     1141 atcttcgaca caaccatctg gacgagcatg tcaccgagga atcgctcgcg gcaggcagcg
     1201 gcgagtatgc gcacaaggat gacatcgcgg tgctgtggcc gctcgcgcag gcgctgttcg
     1261 aaaagcgtca ggaagcgcgt gcggggtatg gtctgcggcg cgaagtgcag cgcaacaacg
     1321 acttcaattt ctatgtggaa ggcgagcaca tcacgatcac gccgcgtcga cgcgggtctc
     1381 cgctcgattt gatcgtcgcc gagctggcga ttctcgcgaa ttcatcgtgg ggtgcgtttc
     1441 tcaacgatca cagcgtgccg gggatctacc gctcgcagcg cggatttggc gcgccgggtc
     1501 cgaagcgcac gcgcatgcag accacgcccg cgccgcacga agggctgggc gttgcgcaat
     1561 atgcgtggag cacgtcgccg ttgcgtcgat acgtcgacct ggtcaatcaa tggcagttgc
     1621 tcgcgtgcgt gcgccatggc gtgacggctg cgctggtcgc gccgttcaag cctaaagacg
     1681 ccgatctgtt cgctgtcgtg cagg
//
LOCUS       DATGBK010000352         2302 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_27679, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000352 DATGBK010000000
VERSION     DATGBK010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27679"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..483
                     /locus_tag="VKJ77_05130"
     CDS             <1..483
                     /locus_tag="VKJ77_05130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HMC44692.1"
                     /translation="ATLQVYHEHLFSETMQVTLRSLMRPLSEALRGRGTHPRVVLTTL
                     SGEAHGLGILMAEAMLALVDCECIALGTQTPPQDIVDAVTAHEIEIVALSFSASMPVQ
                     AVINGLTELRAVLPPKVAIWVGGSSPALRRKLPDGVLNVAGLGPIEDAVAEWRHSSML
                     "
     gene            1020..1892
                     /locus_tag="VKJ77_05135"
     CDS             1020..1892
                     /locus_tag="VKJ77_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HMC44693.1"
                     /translation="MNTMLYPELYKSLESVRWDMEKDIPWDKFDSALLTDEQAKTIKM
                     NAITEWSALPATEMFLRDNHNDSDFSAFISVWFFEEQKHSLVLMEYLRRFKPEMVPTE
                     AELDAVRFEFDPAPPLETLMLHFCGEIRLNHWYRRAAEWHTEPVIKHIYETISRDEAR
                     HGGAYLRYMKKAMTQTGDIARAAFAKIGVLMASARRTEKPLHPTNLHVNQALFPRDTI
                     QSRLPDPEWLEHWLDEQIRFDDSWEKKVVERILHNLSILFERSFATAQELNRYRKEVV
                     LRLQAAQSATQLPA"
     gene            2060..>2302
                     /locus_tag="VKJ77_05140"
     CDS             2060..>2302
                     /locus_tag="VKJ77_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006407084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HMC44694.1"
                     /translation="MPAPFERKIMTRDALAAVRPQFTSPVIFTNGVFDILHRGHVTYL
                     ADAKALGATLIVGVNSDASVRMLGKGDDRPINREDDR"
BASE COUNT          488 a          675 c          676 g          463 t
ORIGIN      
        1 gccacgctgc aggtctacca cgagcacctg ttcagtgaaa ccatgcaggt cacgctgcgc
       61 tcgctgatgc gtccgctctc cgaggctttg cgcgggcgcg gcacgcaccc gcgggtggtg
      121 ctcaccacgc tgtcgggcga ggcgcacggg ctgggcatcc tgatggcgga agccatgctc
      181 gcgctggtcg attgcgaatg cattgcgctc gggacgcaga cgccgccgca ggacatcgtc
      241 gacgccgtta cggcccatga aatcgagatc gtcgctctgt cgttttccgc ttccatgccg
      301 gtgcaggccg tgatcaacgg actcacggag ttgcgcgcgg tgctgcctcc gaaggtggcg
      361 atctgggtcg gcggcagcag tcctgcatta cggcgcaagc tccctgacgg cgtgttgaac
      421 gtcgcgggac ttgggccgat tgaagatgct gtagcggagt ggcgtcatag ctccatgcta
      481 tgatcaacgg gcggtttggc tgcatcgtcc gctgcgtcgt ccagttcgca ctacggttga
      541 tgtagcaagg gcagcccggg cgtgaccagg gaacgattca tggtcagacg ccatggcgtg
      601 gcgtaaaaca tgttgcgcct tgcgcctgtc acgcgcgaga ggcatgcttc gtgcggcgta
      661 ggtagctgta aagccgctga gctccggcaa gagtctcgct aggcaacagg ttttaacaaa
      721 gtatcaaaaa aggctttaaa cgagctgcat tacagctcgc gcttcgtact tacctcaggc
      781 acagggttgg ttcctcaccc acggtagaca ttgcaacgcc gcgtaccgcc gcgcgtttgc
      841 aacgggcaaa aagtcgcaga aggacgcgac aggcgcttct ttaccgtttt tgcatctgag
      901 cgcctgattc ccgcgtaaaa ttgaaagctt cgccgccggc ggcgcggatt cccgcgcgta
      961 gccggctaaa gttacaacag acagaactgt cgcactacgt tgcaaaccag gggtggacta
     1021 tgaacacgat gctttatccg gaactgtata aatcgctgga atcggttcgt tgggacatgg
     1081 agaaggatat tccctgggac aaattcgact cggcgctgct caccgacgaa caagccaaga
     1141 ccatcaagat gaacgcgatc accgaatggt ccgcgttgcc cgccacggaa atgttcctgc
     1201 gcgacaacca caacgacagc gatttttcgg cgttcatcag cgtatggttc ttcgaagagc
     1261 agaaacactc gctcgtgctg atggaatacc tgcgccgctt caagcctgaa atggtgccga
     1321 ccgaagcaga actggacgct gttcgcttcg aattcgatcc cgctcccccg ctcgaaacac
     1381 tgatgctgca cttctgtggc gagatccgcc tgaaccactg gtacaggcgc gcggccgaat
     1441 ggcacacgga gccggtgatc aaacacatct acgaaaccat ttcacgcgac gaagcacgtc
     1501 acggcggcgc gtatctgcgt tacatgaaga aagcgatgac gcagaccggc gatatcgcgc
     1561 gtgccgcatt cgcgaagatc ggtgtcctga tggcttcggc acgtcggacg gaaaaaccgc
     1621 tgcatccgac caatctccac gtgaaccagg cgctgtttcc gcgcgacacc atccagtcgc
     1681 gcttgccgga cccggagtgg ctcgaacact ggctcgacga acaaattcgt ttcgacgaca
     1741 gttgggaaaa gaaagtcgtc gaacggattc tgcataatct ttctattctc ttcgaacgct
     1801 ctttcgccac ggcgcaggag ttgaacaggt atcgcaagga agtggtgttg cgactgcaag
     1861 ctgcacaaag tgcgacgcaa ctgccggcct gatcggcatt ccgacttgtt gttctgaaca
     1921 gcccaccggt ttgtgaccgg cgggctgttt tgtttatgaa ggatgcgttt catacgcaaa
     1981 cgcgcttgta cgcggaagca tgccggcatg catggcacac tacggtcctt ccgaaccccc
     2041 atcgcttaaa gacacagaca tgcccgctcc cttcgaacgc aagatcatga cgcgcgacgc
     2101 gctcgctgct gtgcgcccgc aattcacttc gccggtgatt ttcacgaacg gcgttttcga
     2161 tatcctgcat cgcggccatg taacctatct cgccgatgcg aaagcgttgg gcgcaacgct
     2221 gatcgtgggt gtgaacagcg acgcgtcggt gcgtatgctc ggcaagggcg acgatcggcc
     2281 gatcaatcgc gaagacgacc gc
//
LOCUS       DATGBK010000353         2036 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_73729, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000353 DATGBK010000000
VERSION     DATGBK010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73729"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            375..451
                     /locus_tag="VKJ77_05145"
     tRNA            375..451
                     /locus_tag="VKJ77_05145"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:409..411,aa:Asp,seq:gtc)
     gene            542..>2036
                     /locus_tag="VKJ77_05150"
     CDS             542..>2036
                     /locus_tag="VKJ77_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HMC44695.1"
                     /translation="MLDFFRNHQRLMMALLILIVVPGLGIVGIQGFSSFFDENANVAS
                     VNGHKITRVEYDGAMRQQVDRARQMLGAQFDPKMFETPEMRASLIDSLVQQRVLSDET
                     QRLHLTASDAAVRRALLADPTIASLRKPDGSIDVDQYKQLLAMQGMTPEQYDERVRYG
                     LASDQIPSSIQSTAFTSKTLAQTLTEIAEQRRDVQGLAFRTVDYTAKIQPTDAQVKSY
                     YDAHSAEFATPESATIQYLVMSPATLSAAVKPSDADLKKYYDDNIARFKTQAQVRASH
                     ILITAPKDASAADKAKAKQQAEALLAQVKAHPDQFAEIAQKNSQDPGSAAKGGDLGYF
                     SRGMIAGGSSFDDAAFGLKKGEISGIVQTDFGYHILQATDVKPSVTQPFDEVKDAITK
                     EVIAQQAAKSLADDAEGFTSTVYEKSKSLQPAADKYKLQIQTATVGSKPDPKLPPDSP
                     LNNPKFLAAVFAPDAVKQHNNTQAIDIGNSTLIAGRVMDYKAAAVPAL"
BASE COUNT          455 a          621 c          581 g          379 t
ORIGIN      
        1 ggccatgaaa cactcccggc aagctaactg gaagcttcgg ttttcgccgt cgggatcggc
       61 taacgactta gcgccttagc gactcagccg atgcagacgg tgattagctt cacagcccgg
      121 gggaatcccg ccggcgcgct cgccgagaaa gcagcctttg ctgcgtcgca tgagaaaatt
      181 tcgcatcatc cgatgtttcg ttgtatactt cgtccccgat tgagcaaacg gttgtggagc
      241 aaggctggca gggtgttgat caaacctccc ggtgcaccac tttccggttc tgtcggccga
      301 taggttgctt gccaagtaac tgaattaatc ggctgcgctg aacgcgtctg aatcgttgca
      361 aaagatgcaa aaaaggagtg gtagttcagt tggttagaat accggcctgt cacgccgggg
      421 gtcgcgggtt cgagtcccgt ccactccgcc agcattctcg agaaaggcga actccggttc
      481 gcctttttta ttgcccgctg ctgtaacatc gggcgtttcg tattaggcag aatcgtcacg
      541 catgctcgac tttttccgta atcaccaacg cctgatgatg gccctgttga tcctgatcgt
      601 cgtgccggga ttgggaattg taggtatcca gggcttcagc agtttcttcg acgaaaacgc
      661 caacgtcgcc agcgtcaacg gccacaagat cacgcgtgtc gaatacgacg gcgcgatgcg
      721 tcagcaagtc gatcgcgcgc gtcagatgct cggcgcccag ttcgacccga agatgttcga
      781 aacgccggaa atgcgcgcgt cgctgatcga cagcctcgtg caacagcgcg tgctctccga
      841 tgaaacccag cgcctccacc tgaccgcctc cgacgcagcc gtacgccgcg cattgctggc
      901 cgatccgacc atcgcttcgc tgcgcaagcc ggatggttcc atcgacgtgg accagtacaa
      961 gcaattgctc gccatgcagg gcatgacgcc tgagcagtat gacgagcgcg ttcgttatgg
     1021 cttggcctcg gaccagattc cgtcgagtat ccagtccacg gcgttcacgt cgaagaccct
     1081 ggcgcaaacg ctgaccgaga tcgccgagca gcgccgcgac gttcaaggtc tcgcgttccg
     1141 caccgtcgac tacaccgcga aaatccagcc caccgacgcg caagtgaagt cgtattacga
     1201 cgcgcacagc gctgagttcg ctacgcccga gtccgcgact atccagtacc tggtgatgtc
     1261 gccggccacg ttgtcggcgg cggtcaagcc gtctgacgcg gacctcaaga agtactacga
     1321 cgacaacatc gcgcgtttca agacgcaagc acaggtgcgc gcgagccaca tcctgatcac
     1381 ggcgccgaaa gacgcaagcg ctgctgacaa agccaaggcc aagcaacaag ccgaagcact
     1441 gctcgcacag gtgaaggcgc atccggatca gttcgctgaa attgcacaga agaattcgca
     1501 ggacccgggg tccgctgcaa aaggcggtga cctgggctat ttcagccgcg gcatgatcgc
     1561 cggcggttcg tcattcgacg acgctgcgtt cggcctgaag aagggcgaaa tcagcgggat
     1621 cgtgcagacg gatttcggtt atcacatcct ccaggcaacc gatgtaaagc cgtccgtcac
     1681 gcagccgttc gacgaagtga aggacgcgat cacgaaggaa gttatcgcgc agcaagcggc
     1741 taagagtctg gccgacgatg cggaaggttt cacctcgacg gtctacgaga aatcgaagtc
     1801 gctgcaaccc gccgccgaca aatataagct gcaaatccag acggcgaccg ttggatcaaa
     1861 gcctgacccg aagctgccgc ctgacagccc gctgaacaac ccgaagttcc tcgcagccgt
     1921 attcgcgccg gacgccgtca agcagcacaa caacacacag gctatcgata ttggcaacag
     1981 cacgctcatc gccggccgtg tgatggacta caaagcggca gccgtgcctg cactcg
//
LOCUS       DATGBK010000354         2931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_73740, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000354 DATGBK010000000
VERSION     DATGBK010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73740"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..952
                     /locus_tag="VKJ77_05155"
                     /pseudo
     CDS             14..952
                     /locus_tag="VKJ77_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213825.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CobD/CbiB family protein"
     gene            complement(985..1311)
                     /locus_tag="VKJ77_05160"
     CDS             complement(985..1311)
                     /locus_tag="VKJ77_05160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HMC44696.1"
                     /translation="MKKLTRAPNLITAHHWVNVLVTAGIACEMHNRYLSGAMGEIPAE
                     QCAPEIWILDDRDEVLATGILDRARSGPATNARGWRCQQCGEPLEAQFTVCWQCGTER
                     DPLNDE"
     gene            complement(1364..2290)
                     /gene="rsgA"
                     /locus_tag="VKJ77_05165"
     CDS             complement(1364..2290)
                     /gene="rsgA"
                     /locus_tag="VKJ77_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HMC44697.1"
                     /translation="MRPGNAKKATNARIEGKVIAAHGRHYLVAPADGSAMLQCFPRGK
                     RSEIAVGDRVSYEQSSADQGVIVEIGERRNLLYRSDQFKSKLFAANLDQLMIVLGTEP
                     HFSEDLLGRALIAAEAHGLEPLIVLNKIDMEGPLAVARKRLALYRELGYTVVELSAKA
                     APQRVHEELDARLANRATLLLGQSGMGKSTLVNILVPNAEVATREISKALNSGRHTTT
                     FTRLYPLPGGGSLIDSPGFQEFGLHHLSEGQLERSFADFRPFLGKCRFYNCRHLHEPG
                     CAILDAMAEGKIRPARHQLYAQLVHEASQIVR"
     gene            complement(2287..>2931)
                     /locus_tag="VKJ77_05170"
     CDS             complement(2287..>2931)
                     /locus_tag="VKJ77_05170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HMC44698.1"
                     /translation="FEPLKDEALRARIENLMSRTGFAAKGLFVMDGSRRSAHGNAYFT
                     GFGAAKRIVFFDTLLARLSGNEIEAVLAHELGHFKRRHVIKRLIVTFVLSLAMLALLG
                     WLAQCVWFYEGLGVRPSLLGNNNGLALVLFMLALPVFMFFVTPLGSLSSRKHEFEADA
                     FAASQTDPRDLVNALVKLYEDNASTLTPDPLYSAFYASHPPASQRIERLMQYAA"
BASE COUNT          504 a          911 c          877 g          639 t
ORIGIN      
        1 ctcggcgcat cgcatgactt ttttctccgt attgctggct ctcatcattg agcagttgcg
       61 cgcgctctag ccgcagaacc ctatttcggc gttgcttcag taccatgcgg aatccgcggc
      121 tcatggcttc gatgccggca agcagcggca cggcgtgctc gcctggctag tggtcgtggt
      181 gccatggacc ttagccgtcg ggcttgtcta ttacgtgctc tatcgcatca actttgcgct
      241 ggcgtttctg tggaacgtcg tgatcgtgta tttcacgttg ggcttccggc agttcagcca
      301 ctatttcact gacatccatc tcgcgttgaa taacgacgat gtgcctcgcg ctcgcgaggt
      361 tctcaacgaa tggaccggca tcgatacgct tgatatgccc gtcagcgaga tcgtccggca
      421 tacgctggtt catgcggttg tggcgtcgca tcggcacgtg tttggtgtgt tcttctggtt
      481 cttgatccca atcgggccgg ccggcgcggt gttttatcgc attgcggagt atctggcgag
      541 gtcgtgggtc cagccgaccg acgaacgcac accggcgttt tccacatttg ctcagcgggc
      601 gttctttttt atcgactggg tgccggcgcg gttgactgcg ctcggcttcg ccatcgtcgg
      661 gaatttcgag gacgctattt atgcctggcg taatcatgcc cggcaatggc ccgatgccaa
      721 cgaaggggtt ctgctcgcgg cggggagtgg ggcgcttgga gcccgtctgg cggggccgtt
      781 agcggagccg ttgagcgtcg acgcgttggc ggttggcgat gcgagcccgc tgcccgtcgg
      841 cgatgattgc acgccgcgga cgcttcagtc cgcagtgggc ctcgtctggc gcgccgtgat
      901 tctctggatg ctgttgctgc tcatgctcag catcgcggtg tggctggcct gaaggcctca
      961 tgccctcaag ccctcttaca gcccttactc gtcgttcagc gggtcccgct cagtcccaca
     1021 ttgccagcac acggtgaatt gcgcttccag tggctcaccg cattgctggc agcgccatcc
     1081 ccgggcgttg gttgccgggc cgcttcgggc gcggtccagg atgcctgtag ccaatacctc
     1141 gtcgcgatca tccagtatcc atatttccgg cgcgcattgc tccgccggaa tctcgcccat
     1201 cgcgccgctc agataacggt tgtgcatctc gcacgctatg cccgccgtca ccagcacgtt
     1261 cacccagtga tgcgctgtaa tcagattcgg agcccgcgtc agtttcttca tcccgtcgcg
     1321 atctgtttta gatgacgttg gtcatgttca ccggtcatta aaatcatcga acgatctggc
     1381 tggcttcatg caccagttgc gcatacaact gatgtcgcgc cggcctgatc ttgccttctg
     1441 ccatggcgtc gagaatcgcg cagccaggtt catgcagatg ccggcagtta tagaagcggc
     1501 acttgccgag gaacggccgg aaatccgcga atgaacgctc cagctgtccc tccgataagt
     1561 gatgcagtcc aaactcctgg aaccccggcg aatcgatcag cgatcctcct cccggcagcg
     1621 gatacagccg cgtgaacgtg gtcgtgtgcc ggccgctgtt caatgccttc gatatctccc
     1681 gcgtcgcgac ttcggcgttc ggcacgagga tgttcaccag cgtcgattta cccatgcccg
     1741 attgcccaag cagcaaggtg gcgcggttgg ccagtcgtgc atcgagttcc tcatgcacgc
     1801 gctgaggagc cgctttcgcc gataactcca ccacggtgta cccaagctcc cgatacaacg
     1861 ccagccgctt gcgggcgacc gccagcggcc cttccatatc gatcttgttc agcacgatca
     1921 acggctcgag gccatgcgcc tcggcggcga tcagcgcgcg cccgagcaag tcctcgctga
     1981 aatgcggctc cgtgccgagc acgatcatta attggtcgag attggcggcg aagagcttcg
     2041 acttgaactg gtcggatcga taaagcaggt tgcgccgctc gccaatctcg acgatcaccc
     2101 cttgatccgc cgatgactgc tcgtaactca cccggtcgcc gaccgctatc tcgctgcgct
     2161 tgccgcgcgg gaagcattga agcatggcgc tgccgtcggc gggggcgacc agataatgcc
     2221 gcccgtgcgc ggcaatgacc tttccttcga tgcgcgcgtt tgtcgctttc ttcgcgttac
     2281 ccggcctcat gcggcgtact gcatcaagcg ctcgatgcgc tgcgatgcag gcggatgcga
     2341 tgcataaaac gcagagtaga gtggatccgg cgtgagcgtt gacgcgttgt cctcgtacag
     2401 cttgaccagc gcgttgacga ggtcgcgcgg atcggtctgg ctcgcggcga acgcatcggc
     2461 ttcgaattca tgtttgcgcg agctcaggct gcccaacggc gtcacgaaga acatgaagac
     2521 gggcaatgcc agcatgaaca gcacgagcgc gaggccgttg ttgttaccca gcagcgatgg
     2581 ccgcacgcca agtccttcgt agaaccatac gcattgcgcc aaccagccga gtagcgcgag
     2641 catcgcgagg ctgagcacga acgtgacgat cagacgcttg atcacgtggc ggcgcttgaa
     2701 gtggccgagc tcgtgtgcga gcaccgcttc gatctcgttg ccggagagcc gggcgaggag
     2761 agtatcgaag aaaacgattc gcttcgccgc gccaaaaccc gtgaaatacg cgttgccgtg
     2821 cgctgaacgg cggctgccgt ccatgacgaa caaacccttc gcggcgaatc ccgtacgcga
     2881 catcaggttc tcgatgcgcg cccgcaacgc ctcatctttc agcggctcga a
//
LOCUS       DATGBK010000355         2042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_96892, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000355 DATGBK010000000
VERSION     DATGBK010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96892"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VKJ77_05175"
     CDS             complement(<1..417)
                     /locus_tag="VKJ77_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014725192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HMC44699.1"
                     /translation="MKIAVLPGDGIGPEIIKEAVKVLNALDEKFELEEAPVGGAGYEA
                     SGHPLPEATLALAKASDAILFGAVGDWKYDSLERPLRPEQAILGLRKHLQLFANFRPA
                     ICYPQLTAASSLKPEIVAGLDILIIRELNGDIYFGQP"
     gene            complement(495..1145)
                     /gene="leuD"
                     /locus_tag="VKJ77_05180"
     CDS             complement(495..1145)
                     /gene="leuD"
                     /locus_tag="VKJ77_05180"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HMC44700.1"
                     /translation="MEKFIVHSGLVAPLDRDNVDTDAIIPKQFLKSIKRTGFGPNAFD
                     EWRYLDVGQPGQDNSNRPLNPDFVLNQPRYQGASILLTRKNFGCGSSREHAPWALDQY
                     GFRAIIAPSFADIFYNNCFKNGLLPIVLTESQVDRLFNETYAFNGFKLTVDLERQVVL
                     TGDGTEFPFEVPGFRKFCLLNGFDDIALTLRHADKIRQFENERLVKQPWLNNRLVG"
     gene            complement(1190..1321)
                     /locus_tag="VKJ77_05185"
     CDS             complement(1190..1321)
                     /locus_tag="VKJ77_05185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HMC44701.1"
                     /translation="MKRVFIVLGFIAVVAGVAGCNTVHGFGEDLHHLGNSISNAADK"
     gene            complement(1318..>2042)
                     /locus_tag="VKJ77_05190"
     CDS             complement(1318..>2042)
                     /locus_tag="VKJ77_05190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014725194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HMC44702.1"
                     /translation="AGMVAVDETTINYLKDRPYSPHGAEFEQAATYWRTFTSDPGAKF
                     DRVVELNAAEIVPQVTWGTSPEMVTSIDGRVPDPEREKDPVKRDAIERALKYMALEPN
                     TPMQSIKPDKIFIGSCTNARIEDLRAAAYVVKTLGRRVASNIRLEMVVPGSGLVKAQA
                     EREGLDKVFLDAGFQWREPGCSMCLAMNADRLEPGERCASTSNRNFEGRQGAGGRTHL
                     VSPAMAAAAAIEGHFVDIRELT"
BASE COUNT          375 a          644 c          590 g          433 t
ORIGIN      
        1 aggctggccg aaatagatat cgccgttcag ttcacggatg atcaggatgt ccagccccgc
       61 cacgatctcc ggcttcagcg acgaagccgc cgtcaattgc ggataacaaa tagccggacg
      121 gaagttcgcg aacaattgca ggtgcttgcg cagacccagg atggcttgtt ccggacgcag
      181 cgggcgttcg agcgaatcgt atttccagtc gcccacagcg ccgaacagga tcgcgtccga
      241 tgcctttgcc agcgcgagcg ttgcttccgg cagcggatgg ccgctcgcct cgtagcccgc
      301 gccgccgacc ggcgcttctt cgagctcgaa cttttcgtcg agcgcgttca ggaccttgac
      361 ggcttccttg atgatctccg gaccgattcc atcgccgggc agcactgcaa tcttcatggt
      421 gtttccttcc ttttcttgtc ttgtttattc aagcgcgttc gcacggtttc gtacttgctc
      481 gcacctattc gtacttagcc gacgaggcgg ttattcagcc acggctgctt cacgaggcgc
      541 tcattttcga actgacggat cttgtcggcg tggcgcagcg tgagcgcgat gtcgtcgaaa
      601 ccgttcagca ggcaaaactt gcggaagccc ggcacttcga acgggaattc cgtgccgtcg
      661 ccggtcagca cgacctggcg ctccagatcg accgtcagct tgaacccatt aaacgcgtag
      721 gtctcgttga acagcctgtc gacctggctt tcagtcagga cgatcgggag cagaccgttc
      781 ttgaagcagt tgttatagaa gatatcggcg aaactcggcg cgatgatcgc gcggaaaccg
      841 tactggtcca gcgcccacgg cgcgtgctcg cgcgagctgc cacagccgaa attcttgcgc
      901 gtcagcagga tcgacgcgcc ttggtagcgc ggctggttca gcacgaaatc cggattcagc
      961 ggccggttcg agttgtcctg gcccggctgg cctacatcga gataacgcca ttcgtcgaac
     1021 gcgttcgggc cgaaacccgt gcgcttgatc gacttgagaa actgcttcgg aatgatcgcg
     1081 tccgtgtcga cgttatcgcg atccagcggc gccacaagcc cgctatgtac gatgaatttt
     1141 tccatgatgc gttaccggtt tggtttgctt gaccgttctt tggagccgct tacttgtcgg
     1201 ccgcgttgct gatcgaattg ccgaggtgat gcagatcctc gccgaaaccg tggaccgtat
     1261 tgcagcccgc gacgccggca acgacagcga tgaaccccag cacaataaag acgcgcttca
     1321 tgtcagttcg cggatatcga cgaaatgacc ttcaatagcc gctgccgccg ccattgccgg
     1381 gctcaccaga tgcgtacggc cgcctgcgcc ctgacgcccc tcgaaattgc gattcgacgt
     1441 agatgcgcag cgctcgcccg gctccagccg gtcggcgttc atcgcgaggc acatcgagca
     1501 gcccggttcg cgccactgga aaccggcgtc gaggaacacc ttgtcgagcc cttcgcgttc
     1561 cgcctgcgcc ttcacgagac ccgaacccgg cacgaccatc tccaaacgga tattcgatgc
     1621 gacgcgacga ccgagcgtct tcaccacata cgccgcagcg cgcaagtctt cgatccgcgc
     1681 attcgtgcac gagccgataa aaatcttgtc cggcttgatc gactgcatcg gcgtgttcgg
     1741 ttcgagcgcc atgtacttca gcgcgcgttc gatcgcgtcg cgcttgacgg ggtccttttc
     1801 ccgttcagga tccggcacgc ggccgtcgat ggacgtcacc atttccggcg aagtgcccca
     1861 cgtcacttgc ggcacgattt cggcggcgtt caactccacc acgcggtcaa acttcgcgcc
     1921 cggatcggac gtgaaggtgc gccagtaggt tgctgcctgc tcgaattccg cgccgtgcgg
     1981 cgagtacggg cgatctttca ggtagttgat ggtggtttca tcgacggcaa ccatgcctgc
     2041 cc
//
LOCUS       DATGBK010000356         2133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_120221, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000356 DATGBK010000000
VERSION     DATGBK010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120221"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..664)
                     /locus_tag="VKJ77_05195"
     CDS             complement(<1..664)
                     /locus_tag="VKJ77_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HMC44703.1"
                     /translation="MNPIILDGPLGWSQVAAIAVNKAPLKLSAAAMSRISAANAIVRS
                     LVERHIRAYGVNTGVGALSDTIVPPQQQAALSRNILMSHSVGVGAPLGVSETRAIMVA
                     AVNNYAHGYSGLRLVVVEHVVALLNAGCTPVIPRQGSVGYISHMARVGLMLIGQGHAM
                     LNGERLSAKEALGRIGLDPLVLEAKEGLCLVNGTPCATGLACLVLERARRMMDWADAI
                     SAM"
     gene            complement(661..1713)
                     /locus_tag="VKJ77_05200"
     CDS             complement(661..1713)
                     /locus_tag="VKJ77_05200"
                     /inference="COORDINATES: protein motif:HMM:NF014653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HMC44704.1"
                     /translation="MSATITVTVSLADIETLAARALRASNVSAANAKAVARSIAHAER
                     DGQQIVGLSYLPTYCAHAACGKVDGFAEPALDVLSPAVIRVDARTGFAHPALALGLPA
                     LDEAARVFGVATLAIGNSYACGSLGYFVEELAERGLVALMFANASPSIAPHGGKVPFF
                     GTNPFAFATPRSGEAPLVIDQSSSVVAKVAVIDAHERGATLPPGWALDADGQPTTDAA
                     AAMAGSLSPIGGYKGASLALMIDFFAGGLTCSNFSFEASSFGDCDDGPPRTGQFVIAF
                     DPLMFSGLKFVDRTETLLTAMQSEPDVRVPGTRRTDARRRNQAGIAVPTALWESIQRL
                     AGDRAVMPGEGTEACI"
     gene            complement(1710..>2133)
                     /locus_tag="VKJ77_05205"
     CDS             complement(1710..>2133)
                     /locus_tag="VKJ77_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017876354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HMC44705.1"
                     /translation="PACTKLLGNLTDPDLGSVRLLSLPNSWNHIQADHAVTFRVLPIS
                     PEKTLVTTKWLVHKDAQEGVDYDIDRLTEIWTATNAQDRKLAENNQLGIRGSAYRPGP
                     YSGLIEGGTRDFVRWYADEMQAALAPLVQIDAAQGAAA"
BASE COUNT          429 a          701 c          619 g          384 t
ORIGIN      
        1 tcatggccga aattgcatcg gcccaatcca tcatgcgccg cgcacgctcg agtacaaggc
       61 acgcaagccc ggtcgcacac ggtgtgccat tcaccaggca caggccctcc tttgcttcca
      121 atacgagagg gtccaggcca atccgcccga gcgcttcctt ggcggacagg cgctcgccat
      181 tgagcatcgc gtggccctgg cctatcaaca tgagaccgac gcgcgccatg tggctgatat
      241 aacccacaga accctgacgc ggaatcacag gagtacatcc ggcattgagc aacgctacga
      301 catgttcgac tacaacaaga cgcaagcccg aataaccgtg tgcatagttg ttgacggcgg
      361 cgaccatgat cgcgcgggtc tcgctcaccc ccaatggcgc gccgactccc actgaatgac
      421 tcatcaggat atttcgcgac agcgccgctt gctgctgcgg cggcacgatc gtgtccgaaa
      481 gcgcgccgac ccccgtgttc accccgtacg cacgaatatg tcgttccact agcgagcgca
      541 caatggcgtt agctgcgctg atccggctca tcgccgcagc cgataacttc agcggggcct
      601 tgttgacggc gatagccgca acctgtgacc agccaagcgg tccgtctaga atgatgggat
      661 tcatatgcat gcctccgtgc cttcgcctgg catcaccgcc ctgtccccgg caagacgttg
      721 aatcgattcc cacaatgcag ttggcaccgc gatacccgcc tggttccgcc tgcgcgcgtc
      781 ggtcctgcgc gtaccaggca cgcgaacgtc aggctcggat tgcattgccg tcagcaaagt
      841 ctccgtgcgg tcgacgaact taagaccact gaacatcaac ggatcgaatg cgatcacgaa
      901 ctgccctgtt cgcgggggac cgtcgtcgca atcgccgaat gacgatgcct cgaacgagaa
      961 gttcgagcaa gtcagtccgc ccgcgaagaa atcgatcatc aaggcgaggc tcgctccctt
     1021 gtagccgcct atcgggctca agctaccggc catcgccgca gcggcgtccg tggtgggctg
     1081 accgtcggca tccagcgccc agccgggagg cagagtcgca ccgcgctcat gcgcatcgat
     1141 gacagcgact ttcgctacga cgctagacga ctgatcgatc acaagtggcg cctcgccgct
     1201 tcgtggcgtg gcgaacgcga acggattggt gccgaagaac gggaccttgc cgccatgagg
     1261 tgcgatcgat ggcgacgcat tcgcaaacat cagcgcgacc agcccgcgct cggccagttc
     1321 ctccacgaaa tagcccagtg acccacatgc ataggagttg ccgatggcaa gcgtggcgac
     1381 gccgaagacg cgagccgctt catccagcgc cggcaagcca agcgccagcg ctggatgagc
     1441 gaagccggtc cgtgcatcga cgcgaatcac cgctggcgac agcacgtcaa gcgcgggttc
     1501 cgcgaaacca tcaaccttgc cgcacgcagc gtgagcgcag tacgtgggca gataggacag
     1561 cccgactatc tgttgcccgt cgcgctccgc gtgggcgatc gagcgggcga ccgcttttgc
     1621 attggcggcg ctgacattgg acgcgcgcaa cgctcttgca gcaagcgtct cgatgtcggc
     1681 cagactgacc gtgaccgtga tcgtggcgct catgctgccg ctccctgcgc agcatcgatc
     1741 tgcacgagcg gcgcgagcgc ggcttgcatc tcgtcggcat accagcgcac aaagtcccgc
     1801 gtcccccctt cgatcaaccc cgaataaggc cccggccgat acgcgctgcc acgaataccg
     1861 agttggttat tctcagcaag tttccggtcc tgcgcattgg tggctgtcca gatttcggtc
     1921 aatcggtcga tgtcgtaatc gacgccttct tgcgcgtctt tgtggaccag ccacttcgtt
     1981 gtaacaagcg ttttctccgg gctgattggc agcacgcgaa aggtaacggc gtggtcggcc
     2041 tgaatatgat tccagctatt gggtaagctg agcaaacgca ccgatcccaa atccgggtcg
     2101 gtcagattcc caagcagctt cgtgcacgcc ggg
//
LOCUS       DATGBK010000357         2793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_328205, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000357 DATGBK010000000
VERSION     DATGBK010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328205"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..728)
                     /locus_tag="VKJ77_05210"
     CDS             complement(<1..728)
                     /locus_tag="VKJ77_05210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HMC44706.1"
                     /translation="MQLPQSQAQVAKPAWGMRVGWLLLALVATLYCVWRFAGPSPLQT
                     NLLALLPATEADPVAEKAVDTLATALGDRTVFLVTSNDAAHAKAAAKQLGATLSASGA
                     FGSVTAELPPFDVSKIAGLYMPYRFGLLVPADRTALADGTVSLHDTLARRLYSPLHSG
                     LATQLADDPFGWLEHWLAGLPLATSNLEVEDGLLVAHRGNATSVLVMATLPGSAYESK
                     VQHAVHEAVAHGESTLKQSFPDVT"
     gene            complement(728..1375)
                     /locus_tag="VKJ77_05215"
     CDS             complement(728..1375)
                     /locus_tag="VKJ77_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein carrier protein LolA"
                     /protein_id="HMC44707.1"
                     /translation="MGTLNWRNVGVALSIAFSMPVFAAQPASASDTGLVSQIATHLAQ
                     AKGVRAQFTQTQTLSAMKQPLVSTGSLVFFRERGVIWQIDTPYKATYVITETGVSEVN
                     ANGQRTNSKSSDGVRGVAQVSRMMRAMLGGDLSALYAQFDVHADGTPAQWRMQLTPNQ
                     PQLAQSIKGLEMSGGDYLQALRITLANGDVTRIDFTNSAAVSELPPADRTLFGAP"
     gene            complement(1363..1800)
                     /locus_tag="VKJ77_05220"
     CDS             complement(1363..1800)
                     /locus_tag="VKJ77_05220"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HMC44708.1"
                     /translation="MIEAATPRVLTASAAVEVPFHDVDAMNVCWHGHYLKYFEIGRAA
                     LLRVFDYDYREMQASGYLWPIVEVHLKYVRPATYGQQIEVRAQLLEYENRLKIGYEIV
                     DAASGERLTKGYTIQVAIHAATQELQFVSPPVVIEKLERAWAR"
     gene            complement(1793..>2793)
                     /locus_tag="VKJ77_05225"
     CDS             complement(1793..>2793)
                     /locus_tag="VKJ77_05225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aromatic amino acid ammonia-lyase"
                     /protein_id="HMC44709.1"
                     /translation="TPLTLAPKEGLALMNGTAVMTGLACLAFARAGHLTRLAARLTAL
                     STVALDGRAAHFDPMLFEVKPHAGQAEAAAWIREDLAGREDTPGHRLQDRYSIRCAPH
                     VIGVARDALSWVRRDVENELNSANDNPLIDPDGERVLHGGNFYGGHIAFAMDALKVAV
                     ANLADLMDRQLALLVDDKFNNGLPRSLSGAVPERASINHGFKAVQISSSAWTAEALKL
                     TMPASVFSRSTEAHNQDKVSMGTIAARDCLRILELTEQVAAAHTLATVQAARLRLRIN
                     NTTPIPPPLQTFMESVTAGSPFVDEDRALESDLRTLTARIAACDVVGGYRGKGEHD"
BASE COUNT          530 a          873 c          851 g          539 t
ORIGIN      
        1 aacgtgacat cggggaaact ttgtttgaga gtgctttcgc cgtgcgccac ggcttcatgg
       61 accgcatgct ggaccttcga ttcgtacgcc gaacccggca acgtcgccat cacaagaacg
      121 ctggttgcgt tgcctcgatg cgccacgagc aagccatctt caacctccag gttcgaggtc
      181 gccagcggca agcccgcgag ccaatgttcg agccagccga acggatcgtc ggcgagttgg
      241 gtcgcgaggc cgctgtgcag agggctgtaa aggcgtcgcg cgagcgtgtc gtgcaaggag
      301 accgtgccgt ctgcgagcgc ggtgcggtcg gcaggcacaa gcaagccgaa tcgatacggc
      361 atgtacagcc cggcaatctt cgatacatcg aacggaggca attccgccgt caccgagccg
      421 aatgctccgc ttgctgataa cgtcgcccca agctgtttcg ccgcggcttt cgcgtgcgcc
      481 gcgtcgttgc tggtcacaag gaaaaccgta cgatcaccca gcgcggtcgc caaggtatcg
      541 acggcttttt cagcgaccgg atctgcttcc gttgcgggta acaacgcaag caagttcgtc
      601 tgcaacggcg acggcccggc aaatcgccac acgcaataaa gcgttgcgac gagcgcgagc
      661 agcagccaac cgacgcgcat gccccacgcc ggttttgcga cctgtgcttg cgattgcggc
      721 aactgcatca tggcgctccg aacagcgtgc gatcggccgg tggcaactca ctcaccgccg
      781 cgctgttcgt aaagtcgata cgcgtgacgt caccattcgc gagcgtaatg cgtaacgcct
      841 gcaagtagtc cccgccgctc atttcaaggc ccttgatcga ctgcgcgagt tggggttgat
      901 tcggtgtcag ttgcatacgc cattgcgccg gtgtgccgtc cgcgtgcacg tcgaattgtg
      961 cgtagagcgc ggagagatcg ccacccagca tcgcgcgcat catccgcgaa acctgtgcca
     1021 cgccgcgcac gccgtcgctg ctcttcgagt tcgtccgctg gccgttggcg ttcacttcgc
     1081 tcacgccggt ttcggtgatg acgtaggtcg ctttgtacgg tgtatcgatc tgccagatca
     1141 cgccgcgttc acggaaaaaa accagcgagc ccgtgctgac gagcggctgt ttcatcgcgg
     1201 acagcgtttg agtttgcgtg aactgcgcgc gaacgccctt cgcttgagcg agatgcgtcg
     1261 ctatctgcga aacgagaccc gtatcgctcg ccgatgcagg ctgcgccgcg aacacgggca
     1321 tggaaaacgc gatagacaac gctacaccga cattgcgcca attcaacgtg cccatgcgcg
     1381 ctccagtttc tcgatcacca cgggcggcga gacaaactgc agttcctgcg tcgcggcgtg
     1441 aatagcaacc tggatcgtat agcccttggt cagccgctcg cctgaagcgg catcgacaat
     1501 ctcgtaacca attttcaggc ggttttcata ttccagcaat tgcgcacgta cttcgatctg
     1561 ctgcccataa gtagccgggc gcacgtactt gagatgcact tcgacgatgg gccagagata
     1621 acccgacgcc tgcatctcgc gatagtcata gtcgaacacg cgcagcagcg cggcccggcc
     1681 gatctcgaag tacttcaagt agtggccatg ccagcagacg ttcatggcgt cgacgtcgtg
     1741 gaacggtact tcaactgccg cgctcgcagt caggaccctg ggggtcgcag cttcaatcat
     1801 gctcaccttt tccacggtaa cccccaacca catcacacgc cgcgatccgc gcggtcaatg
     1861 tgcgcaggtc gctttcgagt gcgcggtctt catcgacgaa cggcgatcca gctgtcacgc
     1921 tttccatgaa tgtttgcaat ggcgggggga tgggtgtcgt attgttgatg cgtagacgca
     1981 agcgcgcagc ctgcacggta gcgagcgtat gggccgcggc gacttgctcg gtcagctcca
     2041 ggatacgaag gcaatcgcgt gcggcgatcg tgcccatgct caccttgtcc tggttatgcg
     2101 cttcagtcga ccgcgagaag acgctggcgg gcatggtcag cttgagcgct tccgcggtcc
     2161 atgccgacga cgatatctgc accgctttga agccgtgatt gatcgatgca cgctcaggca
     2221 ccgcgcccga caagctgcgc ggcaggccgt tgttgaattt atcgtcgacg agcagcgcca
     2281 gctggcgatc catcaggtcg gcaagattcg cgaccgccac tttcagcgcg tccatggcga
     2341 aggcaatgtg gccgccgtag aagttgccgc catgcagcac gcgttcacca tctggatcga
     2401 tcagcggatt gtcgttggcg ctgttcagct cgttctcgac atcgcgacgc acccatgaca
     2461 gcgcatcgcg cgcaacgcca atcacgtgcg gcgcacagcg gatggaatag cgatcctgca
     2521 ggcgatgccc cggcgtgtcc tcacggccag cgagatcctc gcgaatccat gccgcggctt
     2581 cggcctgccc tgcatgtggc tttacttcga agagcatggg gtcgaagtgc gcggcgcggc
     2641 cgtcgagcgc gacggtcgac aatgcggtca ggcgtgctgc gaggcgcgtc agatgaccgg
     2701 cacgggcgaa cgcgaggcac gcgagacccg tcatgaccgc cgtgccgttc atcagcgcga
     2761 gcccttcttt cggcgcgagc gtgagtggtg tgt
//
LOCUS       DATGBK010000358         2905 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_212528, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000358 DATGBK010000000
VERSION     DATGBK010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2905
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212528"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1529
                     /locus_tag="VKJ77_05230"
     CDS             <1..1529
                     /locus_tag="VKJ77_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HMC44710.1"
                     /translation="NENVSFDHYFATYPNAANPAGEPAFTPAAGTPAVNGLTGTLLTA
                     NPNFTNTANGTGAANPFRLDRTQAATADQNHAYTAEQHAYDNGAADLFPKYTGKGTAG
                     GAGAFGTAGQVMGYFDGNTVGALWNYAQKFAMSDNAYTSTYGPSTPGALEVVSGQTNG
                     LQPVKFSTGPVSATATGSYYVNDGQGGFTLINDVDPASDTCSSTTDTALLNAKNIGDL
                     LNAQNISWGGFMGGFNLQTVNSNGTTGCKRSTLSPVVGQATADYVPHHNWFQYFASTA
                     NPTHARPSSAAVIGLSLEADGKTPEPANHQYDTDDFFATVKAGNYPSVSFIKAPAFQD
                     GHAGYSDPLDEQAFTAKIVNFLQQQPDWSSTAVIVAWDDSDGWYDHAYAVPTSSSFDA
                     IADQVNGAGTCGTSTAPLGVKGAPVNGRCGPGTRIPFVVISPWAKVNYVDHTQISQAS
                     VVRFIEDNWLNGARLGGGSFDATAGSINGMFNFSGAGNNPTLFVDPNLGTPVASVPTI
                     "
     gene            1647..>2905
                     /locus_tag="VKJ77_05235"
     CDS             1647..>2905
                     /locus_tag="VKJ77_05235"
                     /EC_number="1.11.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006494896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HMC44711.1"
                     /translation="MSHTVTPPVTPNAGEKPSFPRPKHILLGCLAAVVLGAVAFSAWA
                     VVFPSQMPAPVGAIVEDLTGANPNPVVLSRPPVAPLSAVAQLGQKIFFDESLSGSGKQ
                     SCASCHSPDHAYGPPNKLSVQLGGPHMDLAGYRPSPSLMYLYLQPNFSIGPDAGEAEA
                     PPDFAALASQAAGTAKAQKNAGVAPAAPAMVPQGGFFWDGRADTLQAQASGPMLNPVE
                     MANTSEADVSAKLQRTAYKDDFTKLFGPHIFQSTDLTVSEAMFAIARYQIEEQSFHPY
                     SSKYDYWLEGKARLSQAELHGLRLFNDPDKANCAGCHLSKPSSDGVPPMFTDYQYEAL
                     GVPRNTTLAVNHDPKFYDMGVCGPFRDDIKDQTQYCGMFLTPTLRNSATRQVFFHNGV
                     YHSLDDVMSFYNDRNTAPEKFYPKGADG"
BASE COUNT          571 a          956 c          854 g          524 t
ORIGIN      
        1 ataacgagaa cgtctcgttc gaccactact tcgcgaccta tccgaacgcg gcgaacccgg
       61 caggcgaacc ggcattcacg ccggcagcgg gcacgccggc agtcaatggt ctgaccggta
      121 cgttgctgac ggccaacccg aacttcacga acacggccaa cggcacgggc gctgccaatc
      181 cgttccgcct ggaccggacg caagccgcaa ccgccgacca gaaccacgcg tacacggccg
      241 aacaacacgc ctacgataac ggcgcagccg acctcttccc taagtacacg ggtaagggca
      301 cggcaggcgg cgcaggcgca ttcggtaccg caggccaggt catgggttat ttcgacggca
      361 acacggtcgg cgccctctgg aactacgcgc agaagttcgc gatgagcgac aacgcgtaca
      421 catccaccta tggtccgtcc acgccgggcg cacttgaagt cgtgtcgggc cagaccaacg
      481 gcctgcagcc ggtcaagttc agcacgggcc cggtcagcgc gacggccacg ggttcgtact
      541 acgtgaatga cggccagggc ggcttcacgc tgatcaacga cgttgatccg gccagcgaca
      601 cttgctcgag cacgaccgac accgctttgc tgaacgcgaa gaacatcggc gatttgttga
      661 atgctcagaa catctcgtgg ggcggcttca tgggcggctt caacttgcag accgtgaaca
      721 gcaacggcac gactggttgc aagcgcagca cgttgtcgcc ggtggtgggt caggcaaccg
      781 ccgactacgt accgcaccac aactggttcc agtacttcgc atcgacggct aacccgacgc
      841 atgcacgccc gagctcggcg gcagtgatcg gcttgtcgct cgaagcggac ggcaagacgc
      901 cggaaccggc gaaccaccag tacgacaccg acgacttctt cgccaccgtc aaggccggca
      961 actatccgtc cgtcagcttc atcaaggcgc cggcgttcca ggatggtcac gcaggctatt
     1021 cggatccgct cgacgagcag gctttcaccg cgaagatcgt caacttcctg cagcagcagc
     1081 cggactggtc gagcaccgct gtgatcgtgg cgtgggatga ctcggacggc tggtacgacc
     1141 atgcgtatgc agtgccgacc tcgtcgtcgt tcgacgcgat tgccgatcag gtgaatggcg
     1201 ccggcacgtg cggcacgagc acggctccgc tgggtgtgaa gggcgcgccg gtgaatggcc
     1261 gctgcggtcc gggcacgcgt attccgttcg tcgtgatctc gccgtgggcc aaggtgaact
     1321 acgtggacca cacgcagatc agccaggctt cggtggttcg cttcattgaa gacaactggc
     1381 tcaacggtgc gcgtctcggt ggcggttcgt ttgacgcaac ggctggcagc atcaacggca
     1441 tgttcaactt cagcggtgcg ggtaacaacc cgacgctgtt cgtcgatccg aatctgggta
     1501 cgccggtcgc atcggttccc acgatctgat cgttgtctca acgcccgcgt cgggtcaacg
     1561 acgcgggcag tagtgttctt gctgcgtcgc cgccgagcaa ttggccggcg gcgttttttc
     1621 aatgctgcct ctgcttcctg gttaacatgt cgcacaccgt cacacccccg gtaacgccta
     1681 acgccggcga gaagccaagc tttcctcgcc cgaaacacat cttgctcgga tgcctcgccg
     1741 cagtggttct tggcgccgtt gcattcagtg catgggcagt agtcttccct tcgcaaatgc
     1801 cggcccccgt gggcgctatc gtggaagact tgacgggtgc caatccgaat cctgttgtac
     1861 tctcgcgtcc gccggtcgcg ccgttgagcg cggtcgcgca actcggccag aagattttct
     1921 tcgacgaatc gctgtccgga tccgggaaac aatcgtgcgc gtcctgccac agcccggacc
     1981 atgcctatgg ccccccgaac aaactttccg tgcagctggg cggaccgcac atggatctgg
     2041 caggctaccg tccgtcgcct tccctgatgt acctgtatct gcagcctaac ttcagcattg
     2101 gtcccgatgc cggtgaagcc gaagcgccgc cggatttcgc cgccctcgcc tcgcaagccg
     2161 caggaaccgc caaggcgcaa aagaacgcgg gcgtcgcgcc cgctgcgccg gccatggtgc
     2221 cgcaaggcgg tttcttctgg gacggccgcg ccgatacgct gcaggcacaa gcgtccggcc
     2281 cgatgctcaa cccggtggag atggccaaca ccagcgaagc cgatgtctcc gcaaaattgc
     2341 agcgcacggc gtacaaggac gactttacga agctgttcgg cccgcatatt ttccagagca
     2401 cggacctcac cgtttccgag gccatgtttg cgatcgcgcg ctaccagatc gaagagcaat
     2461 catttcatcc gtactcaagc aagtacgact actggctcga gggcaaggca cgcctgtcgc
     2521 aggcggagct gcacggcttg cgcctcttca acgatcccga caaagccaac tgcgcaggct
     2581 gtcatttgtc caagcctagt tccgacggcg tgccgccgat gttcaccgac taccagtacg
     2641 aagcgcttgg cgtaccgcgt aacaccacgc ttgctgtcaa ccacgatccg aagttctacg
     2701 acatgggcgt gtgcggcccc ttccgcgacg acataaagga ccagacgcag tattgcggca
     2761 tgttcctcac gcccacgctc cggaactcgg ctacacggca agtgttcttc cataacggcg
     2821 tctaccattc gctcgacgac gtcatgtcct tctataacga ccgcaatacg gcaccggaga
     2881 agttctatcc gaagggcgcc gacgg
//
LOCUS       DATGBK010000359         1575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_328231, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000359 DATGBK010000000
VERSION     DATGBK010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328231"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..973
                     /locus_tag="VKJ77_05240"
     CDS             <1..973
                     /locus_tag="VKJ77_05240"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC44712.1"
                     /translation="DTVERLIREEQIDCDYLASGKLKLASKPHHLAHLEKTAEVIRRE
                     VDADIEIISRDRISTEVQSDSFFGGLLQRHGGQMHMGKFTVGLADAAARHGAKLYENA
                     PVTSIEKAADGGYRIVSARGEVRAKQVLVATGPSRQGPFGWYRRRLAPVGSFIVVTER
                     LPPELVHEVFPNLRAYTTSRLMHNYFRITPDSRLLYGGRARFTASEQPSDAKSGRILQ
                     DGLAKMFPALAQARIDYCWGGLVDITADRLPRAGQHEGIYFSMGYSGHGTQMSTHMGQ
                     VMADVIDGRESANPWREFEWPAIPGHTGKPWFLPLVGTYYRIKDVFY"
     gene            1034..>1575
                     /locus_tag="VKJ77_05245"
     CDS             1034..>1575
                     /locus_tag="VKJ77_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44713.1"
                     /translation="MNQENLQHADAPAGTEVTELERLTRRGASRREVLRALTAAGMVS
                     LTGAGLLTASGAAFAQAKPKQGGKIRVATQSASAADTLDPAKGALGTDYVRAFMVYSG
                     LTELDSHLGAKMALAESLETKDATVWVVKLRSGVQFHDGKALTPADVIYSLMRHKDPA
                     TASKAKTLADQIKEAKATGP"
BASE COUNT          315 a          479 c          513 g          268 t
ORIGIN      
        1 cgataccgtc gaacgcctga tccgcgaaga gcagatcgat tgcgattacc ttgcatcggg
       61 caagctgaag cttgcctcca agccgcatca tctcgcgcat ctggagaaga cggcggaggt
      121 gatccggcgt gaagttgacg ccgatatcga gatcatcagc cgcgatcgga tctcgaccga
      181 agttcagtcg gacagctttt tcggcggcct gctgcagcgt catggcggcc agatgcacat
      241 gggtaaattc accgtcggtc tggcggacgc cgccgcgcgt cacggggcga agctctacga
      301 gaacgcacct gtgacgtcga tagaaaaggc cgctgacggc ggctatcgga tcgtgtcagc
      361 gcgtggcgaa gtccgcgcaa agcaggtgct ggtcgcgacc gggccgtcgc ggcaggggcc
      421 gttcggctgg taccggcgac gcctcgcacc ggtgggttct ttcatcgtgg tgaccgagcg
      481 tttgcctccg gaactggtgc acgaagtctt tccgaatctc cgtgcataca cgacgtcgcg
      541 tttgatgcac aactatttcc gcatcacgcc cgattcgcgt ttgctatacg ggggccgggc
      601 gcgcttcacg gcgtccgagc agccctcgga cgcgaagagc ggacgcatcc tgcaggacgg
      661 tctcgcgaag atgttcccgg cgctggcaca ggcgcgtatc gactattgct ggggtggtct
      721 cgtcgatatc accgcggacc ggctgccgcg tgcgggccag catgaaggca tctatttttc
      781 gatgggttac agcggccacg gcacgcagat gtccacgcac atggggcagg tcatggccga
      841 tgtgatcgat ggccgcgaga gcgcgaaccc gtggcgtgaa ttcgagtggc cggcgattcc
      901 cggccacaca ggcaagccct ggttcctgcc gctagttggc acgtactacc gcatcaagga
      961 cgtgttttat tgatttgtac ccaagctgaa ataaaccaaa accaacccca gccaccctcg
     1021 cggagaagtc gcaatgaacc aagaaaatct gcaacacgcc gatgccccag ccgggactga
     1081 agtgaccgaa ctcgagcgcc tgacgcgccg gggcgcgtca cggcgcgagg tgctgcgcgc
     1141 gctgaccgcg gccggcatgg tatcgctcac cggagcaggg ttgctcaccg cgagcggcgc
     1201 tgcgttcgcc caggcgaagc cgaagcaggg cgggaagatc cgcgtggcga cgcagtccgc
     1261 atccgccgca gatacgctgg acccggccaa gggcgcgctc ggcacggatt atgttcgtgc
     1321 attcatggtc tacagcgggc tgaccgaact ggattcgcat ctgggcgcga agatggcgct
     1381 ggcggaatcg ctcgaaacaa aagacgcgac tgtgtgggtc gtgaagctgc gtagcggcgt
     1441 gcaattccac gacggcaaag cgcttacgcc cgccgacgtg atctattcgc tgatgcgcca
     1501 taaggacccg gcaacggcat cgaaggccaa gacgctcgcc gaccagatca aggaagcgaa
     1561 agccacgggc ccgaa
//
LOCUS       DATGBK010000360         2806 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_3946, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000360 DATGBK010000000
VERSION     DATGBK010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2806
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3946"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..527)
                     /locus_tag="VKJ77_05250"
     CDS             complement(<1..527)
                     /locus_tag="VKJ77_05250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44714.1"
                     /translation="MALTDALHAFMRDGDTLGVLRRGIGALQSAGWLPAQRFAETLVM
                     VSPLASLSDKNRNQFAEALRDFSAAVERRNLRELACSTLLFEHYRGLHALMAAHTRAA
                     PVSFDDLALAGRAIAPATLRSISPERLARVRAHYERALLMLLRLKAGELRGEAEIVSI
                     LDACLADLAGPDPYD"
     gene            complement(948..1118)
                     /locus_tag="VKJ77_05255"
     CDS             complement(948..1118)
                     /locus_tag="VKJ77_05255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013436118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HMC44715.1"
                     /translation="MEYRSWMCLICGWIYDEEAGLPEEGIAPGTRWEDVPINWTCPEC
                     GARKEDFEMVQI"
     gene            1495..2376
                     /locus_tag="VKJ77_05260"
     CDS             1495..2376
                     /locus_tag="VKJ77_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylpyrimidine/phosphomethylpyrimidine
                     kinase"
                     /protein_id="HMC44716.1"
                     /translation="MPSDTPPIVLTFGLSDPTGGSGLQADLLTLASMGCHGLTVLTGY
                     TVRDSATCDEVTGLDPDTVGTQARMLLEDMPVAAFKIGAATRAEVVSAIAEVVADYDD
                     VPLILAPDFTLDDEHVLAADELRESIADLLVPQTTMLVADHATLLQLAQPDGDAEAPT
                     LDAAISHLLSQGCEYILATETGTHRHVNTLYSEEGQIRQDTWDRTEHRMMGITDTLGS
                     AIAALLANGQEPAEAAREAQEYVFQATRAAFRPGMGAYLPDRFFWARSNDDDEPPPVV
                     IDTQADAPPVIPGEARH"
     gene            2402..>2806
                     /locus_tag="VKJ77_05265"
     CDS             2402..>2806
                     /locus_tag="VKJ77_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HMC44717.1"
                     /translation="MPLRKTSLHPLKHSPGPVRVGCAGWGITDAVAEHFPGDGTHLAR
                     YSQVLTCVEINSSFYRPHRAETYARWRDSVPSTFRFSVKIPKAITHDARLVNCETLLD
                     TFLESATELGSTLGCWLVQLPPSLAFDPDVAKS"
BASE COUNT          552 a          934 c          812 g          508 t
ORIGIN      
        1 aaatcgtagg gatcgggacc ggcgagatcg gccagacagg cgtccagaat agagacgatt
       61 tccgcctctc ccctcaactc gccggccttc aaacgcagca gcatcagcaa cgcacgttcg
      121 tagtgtgccc gcacgcgagc aaggcgctca ggggaaatgg aacgcagcgt agccggcgca
      181 atggcgcggc cggcgagcgc gaggtcatcg aaggaaacgg gcgcggcgcg ggtatgcgcg
      241 gccatcagcg catgcagccc gcgataatgc tcaaacagca gcgtggaaca ggcgagctcg
      301 cgcagattgc ggcgctccac ggctgcgctg aaatcacgca gcgcctcggc aaactggttg
      361 cgatttttgt cgcttaggct ggcaagcggc gacaccatca ccagggtctc ggcaaaacgc
      421 tgcgccggca gccagcccgc cgactgcaac gcaccaatcc cgcggcgcag gacgccgagc
      481 gtgtcgccgt cgcgcatgaa tgcgtgcagc gcgtcggtca gcgccatctc tgcaatccgc
      541 acggcgcccc cgcgcggatt gggcaatgcc tggaacgtgt tgctcaagcc ggattgtgtt
      601 gtcatggaac gctcacgagc cgatgcgcgg cgctacaccg tgcatcggat ggatcttgat
      661 cgaacccggg cacatctcgc cgatgcatgc cgccgcatcc cctctggcga taaaacccgg
      721 acacacgccg gaagagtcga gtcgggtcga gccaactcgc tggccgagcg ttcctgccca
      781 ctggtctaac tatggtctaa cggtggtcta catgaccatc atgcaccgcg acccacgacg
      841 catcacgcga accgcatgcc tattgcccac ctgtaaacaa ggcgcgccgc atgaaggcat
      901 cccatccatg cggcgcggtt attcctgcac gacatccgag cctttgctca gatctggacc
      961 atttcgaagt cttccttgcg tgcgccgcat tcgggacacg tccagttgat tggaacgtct
     1021 tcccagcgag tgcccggcgc aattccttcc tcgggcagtc ccgcttcttc gtcataaatc
     1081 cagccacaaa tcaggcacat ccagcttctg tattccatac ttatgtcgcg tcgggcaatc
     1141 ggttaaatga gtgcatgatg gtaccggttt ggcggcgcga tgcctagcaa tgcagcagcg
     1201 ctggccgatc ggccaggatt ccggcggttt tcgggtttcg tcagggtctc gtcagggtct
     1261 cgttggcccc ctcgccgaca ccgccacgta agcgttacac ggcccgcaac gcccatccag
     1321 caagtatcgg tccttcgttt cacggctttc cgcacattga ttcacccggt tttggtgcga
     1381 aaaaaaggcc atctcatgtg cccgcgtgac tttaggccgc ataatcgtgc cgtttgagcc
     1441 gactccttgt ccggccgctt gaatagccca cagattgaac acacgaataa tccgatgcct
     1501 agcgacaccc ctcctattgt tctaaccttt ggcctgtccg atcccacggg cggctccggc
     1561 ctgcaggcag acctgctgac acttgccagc atgggctgtc acggactcac tgtcctgacc
     1621 ggctacaccg tgcgcgactc ggcgacttgc gacgaagtca ccggacttga ccccgacacc
     1681 gtcggcactc aggcccgcat gttgctggaa gatatgccgg tggcggcctt caagatcggc
     1741 gcggcgacgc gtgcggaagt ggtcagcgcc attgcagaag tggtcgccga ctacgacgac
     1801 gtgccgctga tcctcgcacc cgacttcacg ctcgacgacg aacacgtgct ggcagcggac
     1861 gaattgcgcg aatccatagc ggatttgctc gtgccgcaaa ccaccatgct cgtagccgat
     1921 cacgccacgc tcctgcaact cgcgcagccc gatggcgacg ccgaagcgcc cacgctcgac
     1981 gccgcgatct cgcatttgct gtcgcagggc tgtgagtaca tcctggcgac ggaaacgggc
     2041 acgcatcggc atgtgaacac gctttacagc gaggaaggcc agatcaggca ggacacgtgg
     2101 gaccgtaccg agcaccgcat gatgggcatt actgacacgc tcgggtctgc cattgccgcg
     2161 ttgctcgcta acgggcagga acccgcggaa gccgcgcgcg aagctcagga atatgtgttc
     2221 caggcgaccc gcgctgcctt caggcctggc atgggcgcct atttgccgga ccggtttttc
     2281 tgggcacgtt cgaacgatga cgacgaacca ccgcccgtag tgatagatac acaagccgat
     2341 gcaccacccg ttataccggg cgaagcccgc cactgatact ttcctggagc gagactgaca
     2401 catgccgctg cgcaaaacat cgctccaccc actcaagcac agtcccggcc ccgtacgggt
     2461 cggctgcgct ggctggggca tcacggacgc ggtcgcggaa cacttccccg gcgacggtac
     2521 ccacctcgcc cgctattcgc aggtgctgac ctgcgtcgaa atcaactcca gcttttaccg
     2581 gccgcatcgg gcggaaacct atgcacgctg gcgtgacagc gtgcccagca cgtttcgctt
     2641 ttcggtgaag attccgaagg ccattacgca cgacgcacgc ctcgtgaact gcgaaacgct
     2701 gctcgacacc ttcctcgaat ccgcaactga actgggcagt acgctcggct gctggctcgt
     2761 gcagctaccg cccagcctgg cgttcgaccc cgacgtggcc aagtcg
//
LOCUS       DATGBK010000361         2434 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_328270, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000361 DATGBK010000000
VERSION     DATGBK010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328270"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1101)
                     /locus_tag="VKJ77_05270"
     CDS             complement(<1..1101)
                     /locus_tag="VKJ77_05270"
                     /EC_number="4.3.1.15"
                     /inference="COORDINATES: protein motif:HMM:NF006058.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008838 - diaminopropionate ammonia-lyase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopropionate ammonia-lyase"
                     /protein_id="HMC44718.1"
                     /translation="MLQHNTSARRGRYDESLRDILNIQAADESRAWLSTWDGLNAGPT
                     PLWDLPDLAARLGIGSIRVKDEGRRSPLGSFKALGAPIALIRLIRRLWPEQDFVPAKL
                     TAGHYKALLQDFTVISATDGNHGRALAAAARSIGCRCVIVLHRHVNDERRIAIEQLGA
                     QIVQIDGNYDESVKEAARLAEEHGWEVVSDTSYDGYEAIPRDVMQGYGTIAAEAIEQG
                     SEGPYTHVFIQGGVGGLAAGVVSYFAERFGERRPLCVIVEPGQADCLLQSALRGRAAL
                     ATGSVDSIMAGLACGEASPLAWRFLAVLADFFMTIPDDAAVDAMRIFAEGADRDVPIV
                     AGESGAAGLAGLIQTSSSAEDRAALGLDERSNV"
     gene            complement(1101..2315)
                     /locus_tag="VKJ77_05275"
     CDS             complement(1101..2315)
                     /locus_tag="VKJ77_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007857041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20 aminoacylase family protein"
                     /protein_id="HMC44719.1"
                     /translation="MDTSSAASDFDRQLTQWRHRFHRAPETGFEEHETSAFAAEVLEG
                     FGLEVTRGIGGTGFVANLSCGDGRGVIGLRAEMDALNIHEQAPERSHASVRAGKSHAC
                     GHDGHMSMVLGAAKLLCERRDFNGTVRFIFQPAEEHGKGAKAMIADKLFERFPVDEIY
                     GVHNIPGLRAGAVSTRAGGIMASEDNFVIRINGRGGHAARPHMTIDPIVIAAEIVLAL
                     QTVVSRSVDPGVPAVISCTELFTDGIRNAIPGQVIIKGDTRSYTPDVQRLLENRMRSI
                     SEGICAAHGADCSFEYTHEFVPTVNTPECVPTAITAATAIVGAANVDGNVAPMMISED
                     FGAFLQVVPGNFAFIGNGAEGEPGATPLHNARYDFNDAVLPIGARYLAEIVRTKLPVV
                     DSHNPNQNQRKV"
BASE COUNT          492 a          789 c          677 g          476 t
ORIGIN      
        1 cacgttcgag cgttcatcga gcccgagcgc agcgcgatct tccgcgctgc tgctcgtttg
       61 gatgagtcca gcaagacccg ccgcgcccga ctcccccgcc acgataggca catcgcgatc
      121 agcaccttcg gcgaagatcc gcatggcgtc gacggcggca tcgtcgggaa tggtcatgaa
      181 gaaatcggcg agaacggcca ggaaacgcca cgccagcggc gacgcctctc cgcaggcaag
      241 gccagccatg atcgagtcga cggagccggt agcgagcgcc gcccggcctc gcaacgcgct
      301 ctgcaataga cagtccgctt gacccggttc gacaatcacg cagagcggcc gccgttcgcc
      361 aaagcgctca gcaaaatagc tgacgacacc ggctgccagt ccgcccacgc cgccctgaat
      421 gaacacgtgt gtataaggac cttcgctacc ttgctcgatt gcttcggctg cgatcgtccc
      481 gtatccctgc atcacatcgc gcgggatggc ttcgtagccg tcgtatgagg tatcggagac
      541 gacttcccag ccatgctctt ctgccagacg cgcagcctcc ttcaccgact cgtcatagtt
      601 accgtcgatc tgcacgatct gcgcacccaa ctgttctatg gcgatacgcc gttcgtcgtt
      661 cacgtgacga tgcagcacga tcacgcaccg gcaaccgata ctgcgtgcgg ctgcagccaa
      721 cgcgcgaccg tgattgccat cggtcgcgct gatgaccgtg aaatcctgca gcaacgcctt
      781 gtaatgccct gctgttaact tcgccggaac gaagtcctgc tcaggccaaa ggcgacgaat
      841 caaacggatc agcgcaattg gtgcacccag cgccttgaag ctgccaagcg gggaacgacg
      901 gccttcgtcc ttcacgcgga tcgatccaat ccccagccgt gcagcaagat ccggcagatc
      961 ccacaacggt gtcggaccgg cattcaatcc gtcccatgtc gataaccacg cgcggctttc
     1021 atcggcggct tgaatgttca ggatgtcgcg aagcgattca tcgtaacgcc cccggcgcgc
     1081 gctggtgtta tgttgcagca tcaaactttc ctctggttct ggttagggtt atggctatca
     1141 acgaccggta gtttcgtgcg cacgatctcg gctagataac gcgcgccaat gggcaagaca
     1201 gcgtcgttga aatcgtagcg ggcgttgtga agcggcgttg cacccggctc gccctcagca
     1261 ccgttaccga tgaacgcaaa gttgccggga accacctgaa ggaacgcgcc gaagtcttcc
     1321 gagatcatca tcggggccac gttgccgtcc acgttcgcgg cgcccacgat cgctgtcgcg
     1381 gccgtgatcg ctgtcggaac gcattccggc gtattcaccg tgggcacaaa ctcatgcgtg
     1441 tattcgaatg aacagtcggc gccgtgagcc gcgcaaatac cctcgctgat gctgcgcatc
     1501 cggttctcga gcaagcgctg gacgtcaggc gtgtagctgc gtgtatcgcc cttgatgatc
     1561 acctgtccgg gaatcgcgtt ccgaatgcca tcggtgaaca actccgtgca ggagatcacc
     1621 gcgggcacac cggggtcgac actcctcgat acaaccgtct gcaaagccag cacgatctct
     1681 gccgcaatca caatgggatc aatggtcata tgcggtctcg cagcgtgacc gccacggcca
     1741 ttgatacgga taacgaaatt atcctcactc gccatgatgc caccggcccg cgttgagacg
     1801 gctcccgctc gcaggcctgg aatgttgtga acaccataga tttcatcgac agggaaacgc
     1861 tcgaacagtt tgtcggcgat catcgccttc gcgcccttgc cgtgttcctc ggcgggctgg
     1921 aagatgaaac gcacggtccc gttgaaatcg cgccgctcgc ataaaagctt tgcagcgccg
     1981 agcaccatgc tcatgtggcc atcgtggccg caagcgtggg acttgccggc gcgcacggac
     2041 gcgtggctac gttccggtgc ttgctcatgg atgttgagcg catccatctc cgcacgcaac
     2101 ccgatcacac cgcgaccgtc gccacaagac aggttcgcga caaatcccgt tccgccgata
     2161 cctcgcgtca cctcaagccc gaagccctca agcacctccg ccgcaaaggc gctcgtctcg
     2221 tgttcctcga aaccggtctc gggcgcgcga tgaaagcggt gtcgccattg cgtcaattga
     2281 cgatcgaagt cagacgctgc gctgcttgtg tccatcgtgt ttctccccgt gtcagctcga
     2341 ttcctgctgt gctccagtat aggaatcatc ggctgagaaa aaatctcacc taaggcgcga
     2401 tcttcgatag tttgattcta tttacgagcc tgga
//
LOCUS       DATGBK010000362         1564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_166330, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000362 DATGBK010000000
VERSION     DATGBK010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166330"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1506)
                     /locus_tag="VKJ77_05280"
     CDS             complement(<1..1506)
                     /locus_tag="VKJ77_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC44720.1"
                     /translation="MRERLIPLLLSMLAGACSVGPNFTPPEAKAPDNWHDLQRVQNPP
                     DDMRFPHASVPSLVDTNADPDPRWWRQFNDATLDSLIDRAAAGNLDLQSAVLRIAAAR
                     EQAVVSGAQGLPQLSANASYKREQLGLKGLLQSQGVFDKINALGSNSANVTNALNSAT
                     GPVSLFQDGFDASWELDLFGRVRRSVESANAQTESEMENRNDALVSLEAEVAQTYSQL
                     RGAQLLKQITLAEIDSEQRILDLTREQARVGLTSQSDVESATAQVGSLQAQLPQFDAQ
                     IAQAMNGLAVLTGSVPGELDAELEAPGAVPPVPPSVPIGLPSTLARRRPDIRRAESDL
                     HAATAEIGVAVAQMYPDVSLTGSVGTRATQAKYLAHWSSLFWSVGPSISLPIFEGGAL
                     RANVRIAKAQAGEAALQYRSTVLKALQDVDNALVSYRTDQDRREALTRTVEANRISLQ
                     LATDSYRKGLVSFITVLDAERQLAETRQQLAQSTVSVTTDLIAVYKALGGGW"
BASE COUNT          302 a          565 c          414 g          283 t
ORIGIN      
        1 ccatccgcct cccagcgcct tatatacagc gatcagatcc gtcgtcacgc tcaccgtcga
       61 ttgcgccagt tgttggcgcg tctctgccaa ctgccgctcc gcatccagaa cggtgatgaa
      121 actcaccagc cccttccgat agctatcggt cgcaagctgc aaactgatcc ggttagcctc
      181 caccgtacgc gtcagcgctt cccgacggtc ctgatccgtc cggtacgaca caagggcgtt
      241 gtccacgtcc tgcagtgcct tcagcaccgt cgagcgatat tgcaacgccg cctcaccagc
      301 ctgcgccttc gcaatccgca cgttcgcccg taacgcgcca ccttcgaaga tcggcagcga
      361 aatactcggc ccgaccgacc agaacaaact cgaccagtgc gcaagatatt tcgcctgcgt
      421 cgcccgcgtc ccaacgctcc ccgtcagcga tacatccggg tacatctgcg ccaccgccac
      481 gccaatctcg gccgttgctg catgcagatc actctccgca cgacgaatgt caggacgccg
      541 ccgcgccaac gtagacggca aaccaatcgg cacgcttggc ggcaccggtg gaacagctcc
      601 cggcgcctcc aactccgcat ccagctcccc cggcacactc ccggtcaata cagcgaggcc
      661 gttcatcgcc tgcgcaatct gtgcatcgaa ttgcggtagc tgggcctgca acgaccccac
      721 ctgcgcagtc gcgctctcca cgtcgctctg gctcgtcagc cccacacgcg cctgttcacg
      781 ggtcaggtca agaatccgct gttccgaatc gatctcggcc agcgtgattt gcttcaatag
      841 ttgcgcgccg cgtagttgcg aataggtctg cgccacctcc gcctcaagcg agacaagggc
      901 gtcgttacga ttctccatct cggactcggt ctgcgcattc gccgactcca ccgagcgccg
      961 cacacgaccg aacaaatcaa gttcccacga ggcatcgaag ccatcctgga acaggctcac
     1021 cggacccgtc gcggaattca gggcgttagt cacgttcgcg ctgttcgacc cgagcgcatt
     1081 gatcttgtcg aagacaccct gcgattgcag caagcctttc agacccagtt gctcacgctt
     1141 atagctcgcg ttcgcgctga gttgcggcaa cccctgcgcg cctgacacca ccgcctgctc
     1201 gcgcgccgcc gcaatgcgca gcaccgcact ctgcaaatcc agattgcccg ccgccgcacg
     1261 gtcgatcagg gagtccagcg tggcgtcgtt gaactgccgc caccagcgag gatcggggtc
     1321 cgcattggta tccaccagcg acggcacgct ggcatgggga aaccgcatgt cgtcgggcgg
     1381 gttctgcacc cgctgcagat cgtgccagtt gtctggggct ttcgcttcgg gcggtgtgaa
     1441 attcggacca accgaacatg cgccggcgag catcgacaac agcaggggaa tcaagcgttc
     1501 gcgcatctca atgccctccc ccgccacccg aggctttcac cggcgaaaag aaaaatgtga
     1561 tcgg
//
LOCUS       DATGBK010000363         2075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_3959, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000363 DATGBK010000000
VERSION     DATGBK010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3959"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..940
                     /locus_tag="VKJ77_05285"
     CDS             <1..940
                     /locus_tag="VKJ77_05285"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016990 - arginine deiminase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HMC44721.1"
                     /translation="TGMLKELRAWLEQMPAAQLAEVLVGGVAKAEMPFDARGLFGGYL
                     EQSDFVIQPLVNLIFQRDTSAWIYGGVTVHPMYWPARRKEALLVAAVYRFHPRFAGQV
                     NTWWGDPDRNFGVETMEGGDVMSIGNGVVLIGMGERSSPQAVTQVARHLFAGGGAKRV
                     IACEFPKRRASMHLDTVFSFLDIDFVSIYPEVADEIRCTSLYPGDAPGEIHYERHHAK
                     FLTVVSNALGVGSLRILTTGGDAYETQREQWDDGNNVLALDRRVVVAYDRNTYTNRKM
                     RQAGVEVIEIPGGELGRGRGGTHCLSCPIERDAIDA"
     gene            980..1984
                     /locus_tag="VKJ77_05290"
     CDS             980..1984
                     /locus_tag="VKJ77_05290"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006591 - ornithine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HMC44722.1"
                     /translation="MVFNVHNRSFLTLIEYTPRQIRYLLDLSRDLKRAKYAGTEIARL
                     VGKNIALIFEKTSTRTRCAFEVAAHDQGAHVTYIDPGASQIGHKESMKDTARVLGRMY
                     DAIEYRGYGQEIVDELAKYAGVPVYNGLTDEFHPTQMLADVLTMHEFSDKPIHEISYC
                     YIGDAHNNTGNSLMIVGTKLGMDVRLCAPRRLWPHDDLIAQCRTFAAASGGRLTLTET
                     PAEAVKDVDFIYTDVWVSMGEPFEKWGERIEELLPFQVNAALLADSGNPRVKFMHCLP
                     ALHDTKTEIGKQIGDKYGLLNGVEVTDDVFESDASIVFEQAENRLHTIKAVLVATLAE
                     "
BASE COUNT          434 a          588 c          648 g          405 t
ORIGIN      
        1 caccgggatg ctgaaagagt tgcgcgcgtg gctcgaacag atgccggccg cacaactggc
       61 cgaggtgctg gtcggcggcg tggcaaaggc cgaaatgccc ttcgacgccc gcggcctttt
      121 tggcggctat ctggagcaat cggactttgt gatccagccg ctcgtcaacc tgatcttcca
      181 gcgcgacacc agtgcctgga tctacggcgg tgtcacggtt caccccatgt attggccggc
      241 gcgccgcaag gaagcattgc tggtcgccgc tgtgtaccgc tttcatcccc gcttcgccgg
      301 ccaagtgaat acatggtggg gcgaccccga tcgcaacttc ggcgtggaga caatggaagg
      361 tggtgacgtc atgtccattg gcaacggcgt ggtgctgatc ggcatgggcg agcgctcgag
      421 tccgcaagcg gtcacgcagg ttgcgcggca tctgttcgcg ggcggcggcg ccaagcgggt
      481 gatcgcgtgc gagttcccga agcgtcgcgc ttcgatgcac ctggacacgg tgttctcatt
      541 tctcgatatc gacttcgtca gcatctatcc cgaggtcgcc gatgagatcc gctgcaccag
      601 cctgtatcca ggtgatgcac ccggcgaaat ccactatgag cgccatcacg ccaagttcct
      661 gacggtggtg agcaatgccc tcggggtggg ttcactgcgc attctgacaa ccggcggcga
      721 tgcgtatgaa acgcagcgtg aacaatggga cgacggcaac aacgtgctgg cactcgaccg
      781 gcgcgtggtg gtcgcgtatg accgcaacac ttacaccaat cgcaagatgc ggcaggcggg
      841 cgtggaggtc atcgagatcc cgggcggtga actcggacgc ggacgtggtg gcacgcattg
      901 cctcagttgc ccgatcgagc gcgacgcgat cgacgcctga atcactcacc cgcctttcat
      961 ccattctcaa ccggatctca tcgtgttcaa tgtacataac cgcagtttcc tgacgctgat
     1021 cgaatacacg ccgcgtcaga ttcgctatct gctggatctg tcgcgggatc ttaaacgcgc
     1081 gaaatatgcc ggcacggaaa tcgcgcgtct ggtgggcaag aacattgcgc tgatcttcga
     1141 aaagacctcg acccgtacgc gttgcgcatt cgaagtcgcg gctcacgatc agggcgctca
     1201 tgtcacgtac atcgatccgg gcgcatccca gatcggtcat aaggagtcga tgaaagatac
     1261 cgcccgcgtg cttggccgta tgtacgacgc gatcgaatac cgggggtatg gtcaggagat
     1321 tgtggatgaa ctcgccaagt acgcaggggt acccgtctac aacgggctca ctgatgagtt
     1381 ccacccgacg cagatgctcg ccgacgtgct gaccatgcac gaattcagcg acaagccgat
     1441 ccacgaaatc agttactgct atataggcga tgctcataac aacacgggca attcgttgat
     1501 gatcgtgggc acgaaactgg gcatggatgt acgcctgtgc gcgccgcgcc ggttgtggcc
     1561 gcatgatgac ctgatcgcgc agtgccgcac gttcgcggcc gctagcgggg ggcgtctgac
     1621 actaacggaa acaccggcgg aagcggtgaa ggatgtcgat ttcatctata ccgacgtctg
     1681 ggtatcgatg ggcgagccgt tcgaaaaatg gggcgaacga atcgaggagt tactgccctt
     1741 ccaggtgaat gcggccttgc ttgcggacag cggcaatccg cgtgtgaagt tcatgcattg
     1801 cctgcctgcg ctgcatgaca cgaagacaga aattggcaag cagatcggtg ataaatacgg
     1861 cttgctgaat ggcgtggaag tgacagacga cgtattcgag tcggacgcat cgattgtctt
     1921 cgagcaggca gaaaaccgtc tccatacgat caaggctgtt ctcgtcgcca cgctggccga
     1981 gtgaggagaa cgcaatgctg atggtgatcg cattgggcgg taacgcgttg ctcaagcacg
     2041 gtgaggcggt cagcgccgaa gcgcagcgca acaac
//
LOCUS       DATGBK010000364         1602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_259126, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000364 DATGBK010000000
VERSION     DATGBK010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259126"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VKJ77_05295"
     CDS             complement(<1..181)
                     /locus_tag="VKJ77_05295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018442762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44723.1"
                     /translation="MNPAANGTSGTSATNTTSAPRAKPRAVVFAYHNVGVRCLQVLLA
                     RGVEVALVVTHEDNPD"
     gene            complement(189..1217)
                     /locus_tag="VKJ77_05300"
     CDS             complement(189..1217)
                     /locus_tag="VKJ77_05300"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC44724.1"
                     /translation="MSQTDFLPTGPELTVVVPVYNEEEGLAALFSRLYPALDALGTTY
                     EVIFINDGSRDKSAALLGQQFRARPDTTRVILLNGNYGQHMAILAGFEQSRGESVITL
                     DADLQNPPEEIAKLLEKMRDGYDYVGTIRQQRQDSFWRKKASRLMNRLRERITRIRMT
                     DQGCMLRGYSRHIIDTINRCGEINTFIPALAYTFAQNPIEIDVAHEERFAGESKYSLY
                     SLIRLNFDLVTGFSVVPLQWLSFIGVILSVGSAGLFLLLLVRRFMFGAEVQGVFTLFA
                     ITFFMLGVIIFALGLLGEYIGRIYQQVRARPRYLVQTILEERDGQLARTMPRQEAVAA
                     ISREVDPL"
     gene            complement(1331..>1602)
                     /locus_tag="VKJ77_05305"
     CDS             complement(1331..>1602)
                     /locus_tag="VKJ77_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HMC44725.1"
                     /translation="IALPLERLSLTRSAFMGLMKERGIGTGVHYPALHLFTLYRGRGF
                     HEGMFPHAEKYGASTVTLPLFTQMTQDDVTRVVHAVNEICAAHAI"
BASE COUNT          303 a          471 c          503 g          325 t
ORIGIN      
        1 cgtccggatt gtcttcgtgc gtgacaacca gcgcgacctc cacgccgcgc gcgagcagga
       61 cctgcaggca gcgcacgccg acgttgtgat acgcgaatac aaccgcgcga ggcttcgcgc
      121 gcggggcgct tgtcgtgttc gtagcgctcg tgccgctcgt gccgttggcc gccgggttca
      181 tagcggcctc atagcggatc gacctcgcga ctgattgctg ctaccgcttc ctggcgaggc
      241 atggttcgcg caagctggcc gtcgcgctcc tccaggatgg tttgcacgag gtagcgcggc
      301 cgcgcgcgca cttgctgata gatccggccg atatattcgc cgagcagtcc aagcgcgaag
      361 atgatcacgc cgagcatgaa gaacgtgata gcgaacagcg taaacacacc ttggacttcc
      421 gcgccgaaca tgaagcgtcg aaccaacagc agcaggaata gacccgcgga ccccacggaa
      481 aggatcacgc cgatgaacga caaccactgc agcggcacga ccgagaaccc ggtcaccagg
      541 tcgaaattga ggcggatcag gctgtaaagc gagtacttcg attcaccggc gaagcgctct
      601 tcgtgcgcga catcgatttc aatcgggttt tgcgcgaagg tataggccag cgcgggaatg
      661 aaggtattga tctcaccgca gcggttgatg gtgtcaatga tgtgccggct gtaaccgcgc
      721 aacatgcaac cctggtcggt catcctgatg cgcgtgatgc gctcgcgcag ccggttcatc
      781 aggcgcgacg ctttcttgcg ccaaaagctg tcctggcgtt gctggcgaat cgtgccgacg
      841 tagtcgtaac cgtcgcgcat cttctcgagc agcttggcaa tttcctcggg gggattctgc
      901 aagtcggcgt cgagcgtgat gacgctttcc ccgcgcgatt gttcgaagcc cgcaagaatc
      961 gccatgtgct ggccgtagtt gccgttcagc aggatcacgc gggtggtgtc cggccgcgcg
     1021 cgaaattgct ggccgagcaa tgccgccgac ttgtcgcggc tgccgtcgtt gatgaagatc
     1081 acttcatacg ttgtgccgag cgcgtcaagc gcgggataca gccgggagaa gagggcggca
     1141 aggccttctt cttcgttgta caccgggacc acgaccgtta attccgggcc ggtcggcaaa
     1201 aaatccgttt gactcatgtt ggcgatggtt ccgctaggtg tccgtggtga aaaatgtcgt
     1261 tcttgttttg ctgtgtcaac tgcgtggcgt gcttgcctgc ctgcaggcgt tacgttggtt
     1321 agttagtacc ttaaatggcg tgtgccgcgc agatttcgtt gactgcatgc actacgcgcg
     1381 tcacgtcgtc ctgggtcatc tgcgtgaaca gcggcagcgt gaccgttgat gcgccatatt
     1441 tttccgcgtg cgggaacata ccctcgtgaa acccgcgacc gcgatacagc gtgaacaggt
     1501 gcagcgccgg gtagtgcacg cccgtgccaa tgccgcgttc cttcatcagg cccatgaacg
     1561 ccgagcgcgt aagcgacagg cgctcgagcg gcagcgcgat ct
//
LOCUS       DATGBK010000365         2490 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_236084, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000365 DATGBK010000000
VERSION     DATGBK010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2490)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236084"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..371)
                     /locus_tag="VKJ77_05310"
     CDS             complement(<1..371)
                     /locus_tag="VKJ77_05310"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006053040.1"
                     /note="catalyzes the reduction of N-acetyl-5-glutamyl
                     phosphate to N-acetyl-L-glutamate 5-semialdehyde in
                     arginine biosynthesis; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HMC44726.1"
                     /translation="MTTKVFVDGQEGTTGLKIFEYLSERRDVEVLRIEEARRKDVEER
                     RRLINASDVTFLCLPDVASRESVSLVDADNHRTVVIDASTAFRTHDDWAYGLPELMPA
                     QRERLRTAKRIAVPGCHASAFL"
     gene            complement(520..1086)
                     /locus_tag="VKJ77_05315"
     CDS             complement(520..1086)
                     /locus_tag="VKJ77_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin family protein"
                     /protein_id="HMC44727.1"
                     /translation="MPKIVIVYHSGYGHTKKVAEAVLTGTIDAGADAKLLAVGDLDDA
                     GWAELDAADAIIFGAPTYMGGPSADFKKFADASSKPWFAQSWKDKIAAGFTNSATMNG
                     DKHSTIAYLITLAMQHSMIWAGTGMMPSNTKAATRNDLNFVGGFSGLLTQSPADASPD
                     EAPPPGDLETAKAFGARVAAVAARWNAK"
     gene            complement(1254..1781)
                     /locus_tag="VKJ77_05320"
     CDS             complement(1254..1781)
                     /locus_tag="VKJ77_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HMC44728.1"
                     /translation="MVSNAPRAVAEVIDTAPFTLTSTDLRSNQQVPLALIFDQNDCKG
                     GNRSPQLSWHGAPAATQSFAVTIFDPDAPGRGWWHWAVAGIPASVSQLPSNASALGVL
                     RKMGAVESRNDFDIDGYAGPCPPPGKPHHYVITVYALNSSDLRLRQSSPSLMFEHEIR
                     TTTIASAQLVVTYGR"
     gene            2175..>2490
                     /locus_tag="VKJ77_05325"
     CDS             2175..>2490
                     /locus_tag="VKJ77_05325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC44729.1"
                     /translation="MGQRIKVIIADDHPVILFGAAQALLKFPEIEVIGQARQSTELIQ
                     LLQKSPCDVVVSDLAMPGGQFGDGMPLLGYIGRQFPTVRIVVLTMLENPALLKRLREV
                     GVT"
BASE COUNT          496 a          724 c          762 g          508 t
ORIGIN      
        1 aggaacgccg atgcgtggca gcccggcacc gcgatgcgct tcgccgtgcg caaacgctcg
       61 cgctgcgccg gcatgagttc gggaaggccg taagcccagt cgtcatgcgt gcggaacgcc
      121 gtgctggcgt caatcactac cgtgcggtga ttgtccgcgt ccaccagcga aaccgattcc
      181 cgcgaagcca cgtccggcag gcacaggaac gtaacgtccg acgcgttgat cagccgccgg
      241 cgttcctcca cgtctttgcg ccgcgcttcc tcgatacgca gcacctcgac gtcacgccgc
      301 tcggacagat attcgaaaat cttcaggccg gtggtgcctt cctgtccgtc gacaaatact
      361 ttcgtggtca tctcgatctc gctgggtcgg tcgcgcccgg aggtcatgtg gcccgagcgc
      421 ggtcaaaacg ccattttaat gcgcttccgc gacaacgcga tggcattgcc gggcacatcg
      481 gccgatcggc cttaaaaacg ttgcaatgcc gtcaaaaaac tactttgcgt tccagcgcgc
      541 cgccacggcc gcgacccgtg ccccgaacgc tttggccgtc tccagatcgc cgggtggcgg
      601 ggcttcgtca ggcgatgcat ccgccggcga ttgcgtcagc aaacccgaaa aaccgccgac
      661 gaagttcagg tcgttacgcg tggccgcctt tgtgttcgag ggcatcatgc ctgtgccagc
      721 ccagatcatg ctgtgctgca tcgcaagcgt gatgaggtag gcaatggtcg aatgcttgtc
      781 gccgttcatg gtcgcggagt tggtgaatcc ggcggcgatc ttgtccttcc acgattgcgc
      841 gaaccacggt ttggagctgg catcggcgaa tttcttgaag tcggctgacg gacctcccat
      901 gtacgtgggc gcgccgaaga tgatggcatc cgcggcgtcg agctcggccc agccggcgtc
      961 gtccaggtcg ccgacggcaa gcagtttcgc gtccgcgccg gcgtcgatcg tgccggtgag
     1021 cacggcttcg gcgacttttt tcgtatggcc gtagccactg tgataaacga taacgatttt
     1081 cggcatttca ttccccgttt gcgacacaac gtcgcgggtt gcgcaagaac aaccggaacc
     1141 gcgcgtcttc gcgataactt gtccggctgc caaaaaacga cgccggtgag cgatagttca
     1201 cgggcgagtc tagcaaagcc aaattggacc tgccggcgcg ccatcaagga cgttcagcgc
     1261 ccataggtga cgacgagttg cgcgctggcg atggttgtag ttcggatttc gtgctcgaac
     1321 atgagcgaag ggctgctttg gcgcaggcgc aagtcgctgc tgttgagtgc gtagaccgtg
     1381 atgacgtagt ggtgtggttt gcccggtggc ggacaggggc ccgcataacc gtcgatatcg
     1441 aagtcattgc gcgattcgac cgcacccatt ttgcgcaaga cgcccaaggc gcttgcgttc
     1501 gacggcaact gcgagacgct cgcgggaatg cccgctacgg cccagtgcca ccagccgcgg
     1561 ccgggcgcgt ccgggtcgaa gatggtgacc gcgaaacttt gcgtggcggc aggcgcaccg
     1621 tgccatgaca actgcggcga acggttgccc cccttgcagt cgttctggtc gaagatgagc
     1681 gcgagcggta cctgctggtt cgagcggagg tcggtacttg tcaacgtgaa aggggctgtg
     1741 tcaataactt cagcgaccgc acgcggcgca tttgatacca tcgcgtcgca gaaaacgggc
     1801 agcaccgtgc tgcggaaaat tcggaacctg acgacacgcc aatcaacagc gcggtacaca
     1861 gcacaaacca caagcccgat ccccaagcgc atggtgcaag ttctccggtc acgggcgcgg
     1921 ccaaatctgg cgtttcaccc actgtaacga tgtattttgt ctcagaaatt ggcttagagc
     1981 ttgaatcaag tttaacatcg cgggaaagga caaaattttt caaatgttca aaacaagact
     2041 ccgcaagggt caacaccgtg acttcgggtt tagccgcagt ttcgctctcc cggctgaagg
     2101 gccaatgtaa tgagtaggag cacattgcct ataatgcgcg agggatttgt tcatttacga
     2161 gcgaggggaa aataatgggt caacggataa aagtcattat cgccgatgac catcctgtca
     2221 ttctgtttgg cgccgcgcag gcgctattga agtttcccga gatcgaagtg attgggcaag
     2281 cgcgtcaatc gacggaattg attcagcttc tgcaaaaatc gccctgcgac gtggtcgtgt
     2341 ccgaccttgc catgcccggg gggcaatttg gcgacggcat gccattgctg ggttatatcg
     2401 ggcgtcagtt tccgacggtg cgcatcgtcg tgctgaccat gctggaaaat cccgccctcc
     2461 tgaaacgctt gcgtgaggtg ggtgtgacgg
//
LOCUS       DATGBK010000366         1552 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_97060, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000366 DATGBK010000000
VERSION     DATGBK010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97060"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..935)
                     /locus_tag="VKJ77_05330"
     CDS             complement(<1..935)
                     /locus_tag="VKJ77_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HMC44730.1"
                     /translation="MPDAVPSSSSPPSPSRAIGPLFALFPFLRPYAGRWALAFLALVT
                     SAGATLALPVAFKYLIDRGFASGDRAHIDRYFLALFVVSLILAGATALRFYLVSWLGE
                     RVTADLRRAVYDHVLEMSPQFFETTQTGEVLSRLTADTTLIQTVVGTSLSLGLRNFFL
                     LTGGVAMLAVTSPVLSAYIIATLVVVVAPIVIFGRRVRRLSRASQDKVANASAVAGEV
                     LNAMPTVQSYTQEPFEARRFGGAVELAFETALTRIRARAWLTAVVIVLVFTAIVFVLW
                     LGAQAVLAGRMTAGQLSQFILYAVFTAGAVGAVAEV"
     gene            1139..1330
                     /locus_tag="VKJ77_05335"
     CDS             1139..1330
                     /locus_tag="VKJ77_05335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44731.1"
                     /translation="MTDNPDPDKLKGPGGLTLRQIHEQVQKSVERDRKELATRSTAAP
                     PKGRWQRWVRYVWGRSGRR"
     gene            complement(1403..>1552)
                     /locus_tag="VKJ77_05340"
     CDS             complement(1403..>1552)
                     /locus_tag="VKJ77_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010118976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC44732.1"
                     /translation="SDLDAWALAQTPLGRLGQPDDIASIAVFLASDDSRWLTGEHVVA
                     SGGMR"
BASE COUNT          335 a          533 c          476 g          208 t
ORIGIN      
        1 acctcggcga ccgctcccac agcgccagcc gtgaacaccg cgtagaggat gaactgggac
       61 aactggccgg cagtcattcg cccggccagc accgcctgcg ccccaagcca aagcacgaac
      121 acgatggcag tgaacaccag cacaatcacc acggcggtca gccacgcgcg cgcccggatg
      181 cgcgtgagcg ctgtttcaaa agccagctct accgcgccgc cgaaccgccg cgcctcaaag
      241 ggctcctgcg tgtacgactg cacggtcggc atggcattga gcacctcgcc cgccaccgcg
      301 ctcgcgttcg ctaccttgtc ctggctcgcg cgcgaaaggc gccgcacgcg ccggccaaag
      361 atcacgatcg gcgcgaccac cacaaccagc gtagcgataa tgtaagccga tagcaccgga
      421 ctggtcaccg ccagcatcgc tacgccgccg gtaagcagga agaagttacg caaccccaac
      481 gacaggctgg tgcccaccac cgtctggatc aatgtggtgt cggcggtgag ccgcgacagc
      541 acctctccgg tctgcgtagt ctcgaagaac tgcgggctca tctccagcac gtggtcgtag
      601 accgcgcgcc gcaggtcagc cgtgacccgc tcgcccagcc aggatacgag gtagaaacgc
      661 agcgctgtgg cgccggcgag tatcagcgag acaacgaaga gtgcgaggaa ataacgatcg
      721 atgtgggccc ggtcgccgct ggcaaagcca cggtcgatga ggtatttgaa cgccaccggc
      781 aacgccagcg tggcccccgc cgatgtcacc agcgccagga acgcaagcgc ccaccgcccg
      841 gcataggggc gcaggaaggg aaacagcgca aacagggggc ctatggcccg cgaaggcgaa
      901 ggcggcgaag acgacgacgg gacagcgtca ggcattgaga ttccaggtgg atcgaaggtc
      961 tccccgattg tgccagtgct gcagattcga cgacggacta catcaaagtg cagcaccgat
     1021 tcatgcgtgc ttcggcattc gtacgttgtt ccagaccaca cgccgcggga cgcgctgctt
     1081 gccgcgactg cccatctgta tcaagatcaa cccgactcat ccggaacgag ccactctcat
     1141 gacagacaat cccgatcccg acaaactgaa gggtcccggt ggcctgacct tacgccagat
     1201 ccatgaacag gttcagaaaa gcgtcgagcg cgaccgcaaa gagctcgcaa cgcgcagcac
     1261 cgccgctccg ccgaagggcc ggtggcagcg ttgggtgcgc tacgtatggg gccgcagcgg
     1321 ccgtcgctag cgctgtgttt gatgcccgac gcccgacggc ccccccgcgg gtccgcgccg
     1381 ggcgcaatca cccatctaaa aatcagcgca tgccgccgct cgcgacaacg tgttcgcccg
     1441 tcaaccagcg ggagtcgtcc gaggcaagaa acactgcgat cgacgcgatg tcatccggct
     1501 gacccagccg gccgagcggg gtctgagcga gcgcccacgc gtcaagatcg ga
//
LOCUS       DATGBK010000367         1505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_282154, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000367 DATGBK010000000
VERSION     DATGBK010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282154"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..501)
                     /locus_tag="VKJ77_05345"
     CDS             complement(<1..501)
                     /locus_tag="VKJ77_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006763283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HMC44733.1"
                     /translation="MPHTILQAMRLSKRAARPLPRARSGFISFAVAGVVAVLAGCASG
                     PPAAVSNIRYDLGAPTPLGNTMNMPPVKVLAVNAAKNLDTDAFVYRLKYADAQRTGSY
                     ADSHWTMSPAELLTQRLRAALASRGPVLTGADAVRAPMLQVDLTDFEQVFDAPEQSHG
                     EVSARVT"
     gene            complement(612..>1505)
                     /locus_tag="VKJ77_05350"
     CDS             complement(612..>1505)
                     /locus_tag="VKJ77_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HMC44734.1"
                     /translation="FFFNVDRTVRVPYDLVARTNVTGLYTDADVRYRGLGVGKVASIK
                     FDHANPGQIRIRIEVDKNAPITQSTFATLGFQGVTGIAFVQLDDTGKNPAPLLSSTQK
                     VASLPLRPGLFDQLQQRGDILIKKFERIADDADRFMSDDMRDQVQQTAKSLQGAADSI
                     SALSKQVGPVAEQLPRTLNQLDRTLASTNALANSLSRADGPFVTNMNRAGEAAERAGR
                     VMDEVNESLQEMAARVGYETLPRVNSLADDVGSAARSVDHAAETFNRNPRSLLFGAPQ
                     PAPGPGEPGFQWPSAPSNPSK"
BASE COUNT          262 a          494 c          467 g          282 t
ORIGIN      
        1 cgtcacccgc gccgagacct cgccatggct ttgctcgggg gcatcgaaga cttgctcgaa
       61 gtccgtcaga tcgacctgca acatgggtgc acgcaccgcg tcggcacccg tgagcaccgg
      121 tccgcgcgag gccagcgccg cgcgcaggcg ctgcgtgagc aactccgccg gcgacatggt
      181 ccagtggcta tccgcatagc tgccggtgcg ctgggcatcg gcatatttca ggcgatagac
      241 gaacgcgtcg gtatccaggt ttttcgctgc gttcaccgcc agcactttca ccggcggcat
      301 gttcatggtg ttgccaagcg gcgtgggcgc gcccaggtcg tagcggatat tcgacacagc
      361 cgcgggcggt cccgacgcgc aacccgcgag gacggcaaca acgcctgcga cggcgaagct
      421 gataaaaccg gagcgcgccc gcggcagcgg gcgcgcagca cgcttggata agcgcatcgc
      481 ctgcaagatc gtgtgtggca tcacagttcc ctatttcaag atcaaaaacg cttggacatc
      541 gaactctagt ccgccaaatt tccgtgggta gcggacccag tgccgatgct tttgcgccct
      601 gttttacaac ttcatttcga cggattcgat ggcgccgacg gccactggaa acccggctcg
      661 ccaggccccg gcgccggctg cggcgcgcca aacagcaagc tgcgcggatt ccggttgaag
      721 gtctcggcgg cgtgatccac cgagcgcgcc gcactgccca cgtcgtcggc gagcgaattc
      781 acgcgtggca aggtctcgta acccacccgc gcggccatct cctgcaacga ctcgttgact
      841 tcgtccatca cccggccggc gcgttcagcc gcctcacccg ctcggttcat gttcgtcacg
      901 aacgggccgt ccgcccggct caggctgttc gcgagcgcat tggtcgacgc gagcgtccgg
      961 tccagttgat tcagcgtgcg cggcagttgc tccgccaccg ggccaacctg cttgctcaac
     1021 gcggaaatgc tgtcagccgc gccttgcagg cttttggcgg tctgctgcac ctgatcgcgc
     1081 atgtcgtcgg acatgaatct gtctgcatcg tcggcaatcc gttcaaactt tttgatcagg
     1141 atgtcgccgc gttgctgtag ttggtcgaac aagcccgggc gcaatggcag cgacgccacc
     1201 ttctgcgtcg atgaaagcag cggcgcggga ttcttgccgg tgtcgtcgag ttgtacgaat
     1261 gcaatccccg tcacgccctg gaacccgagc gtagcgaacg tggactgcgt gatcggcgcg
     1321 ttcttgtcga cctcgatgcg gatgcggatc tgccccggat tggcatgatc gaacttgatg
     1381 gacgctacct tgcccacgcc caacccgcga tatcggacgt ccgcgtcggt gtacaaaccc
     1441 gtcacgttgg tgcgcgcgac gaggtcgtac ggcacgcgca cggtgcggtc cacgttgaaa
     1501 aagaa
//
LOCUS       DATGBK010000368         1741 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_4061, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000368 DATGBK010000000
VERSION     DATGBK010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4061"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..603
                     /locus_tag="VKJ77_05355"
     CDS             37..603
                     /locus_tag="VKJ77_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HMC44735.1"
                     /translation="MKFKRSVTIGTTALLVIGGLGLLAACTLAGSNKSGNAHVPEPAK
                     PVDLDRYLGQWYEFARYENRFERGCEAVTANYAKRDDGLVSIINSCRAGGVNGAFRSS
                     EGKAKIVPDTNNTKLKVSFFGPFYVGDYWVLDHADDYTWSIVGEPSGKYLWILTREAK
                     PSAEQRTALVNRARSLGYDVTLLRETLH"
     gene            complement(647..940)
                     /locus_tag="VKJ77_05360"
     CDS             complement(647..940)
                     /locus_tag="VKJ77_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HMC44736.1"
                     /translation="MATYKQLTAQLEKLHKEVAIAQQKEIAAVIEDIKRTIVDYDLTA
                     EELGFAARRGRPARKTPLPPKYRDPKTGDTWSGRGRPPGWLTGRNKERFLIGA"
     gene            complement(1021..>1741)
                     /locus_tag="VKJ77_05365"
     CDS             complement(1021..>1741)
                     /locus_tag="VKJ77_05365"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HMC44737.1"
                     /translation="AELPLMFQPGTRWHYGISTDVLGALIQRLSGMSLEAFFRTRIFE
                     PLAMADTSFVVPPEKLGRLSVAYAIDPATRQRVVEDHPASSRFAKPGRFQNGGGGLVS
                     TADDYLRFARLLLGRGRLQGDADERARGPRLLSHQSVDLMRTNFLSRDQRRIPAFGQM
                     LWAGQGFGLGLAIVDDPAQQRTLGYRSAGSFGWPGAYGTSWFADPVENMIGIMLIQRR
                     SMEPFPMAAVFERHLYDAIDD"
BASE COUNT          359 a          519 c          528 g          335 t
ORIGIN      
        1 agcgacgcgt accgcttaaa cacaacgagg accattatga aattcaaacg atccgtcacc
       61 atcggcacaa cggctttgct ggtgatcggc ggactgggcc tgctggccgc atgcacactg
      121 gccggcagca acaagagcgg caacgcgcat gtgcccgagc ctgcgaagcc ggtcgatctc
      181 gatcgttacc tgggccaatg gtacgaattt gcacgctatg agaaccgctt cgaacgcggc
      241 tgcgaagcgg tcacggcgaa ctatgcgaaa cgcgatgacg ggctggtctc tatcatcaat
      301 tcatgtcggg ccggcggtgt gaatggcgca ttcaggtcgt ccgaagggaa ggcgaagatc
      361 gtgccggaca cgaacaacac gaagttgaaa gtgtcgttct tcggaccgtt ctacgtgggc
      421 gattactggg tgctcgatca cgccgatgac tacacgtggt ccatcgtcgg cgaaccgagc
      481 ggcaagtact tgtggatcct gacgcgtgaa gcgaaaccat cggctgaaca acgcacggca
      541 ttggtcaatc gcgcacgctc gctcggctac gacgtgacgt tgttgcgcga gacgctgcat
      601 tgaacgcatc acgcgtgaac cttttcgaca ctcacgcgcg aagtgttcaa gcaccaatca
      661 gaaagcgttc cttgttgcgc cctgtcagcc agccgggcgg gcgcccgcgc ccgctccatg
      721 tgtcgccggt cttcggatcg cgatacttcg gcggcagcgg cgtcttcctg gccggccggc
      781 ctcgcctcgc tgcaaagccc agctcttcag cggtcaggtc gtagtcgacg atcgtccgct
      841 tgatatcttc gatcacagcc gcgatttcct tctgctgtgc gatcgccact tccttatgca
      901 gtttttcgag ttgcgcggtc agttgcttgt aggtggccat aagcttttct ctgggttcgg
      961 catgcgcccg aattgaacat ggcgtgataa cgccagtcat cggttcttac tcgtcaccgc
     1021 ttagtcgtcg atggcgtcat acagatggcg ctcgaacacg gctgccatcg ggaaaggttc
     1081 catgctgcgt cgctggatca gcatgatgcc gatcatgttt tcaaccggat cggcgaacca
     1141 gctcgtgccg tacgcaccgg gccagccgaa cgaaccggca gaacgataac cgagcgtgcg
     1201 ttgttgcgct ggatcgtcca cgatggccaa gcccaatcca aacccttggc ccgcccacag
     1261 catctgaccg aacgcgggaa tgcggcgctg atcacgcgac aggaaattcg tgcgcatgag
     1321 atcgaccgac tgatgcgaca gcagacgcgg accgcgcgcg cgttcatcgg cgtcaccttg
     1381 cagacggccg cggccgagca gcaggcgcgc gaaacgcaga tagtcgtcgg cagtggaaac
     1441 aaggccgcct ccaccatttt gaaaacgccc gggtttggca aagcggctcg atgccggatg
     1501 atcttccacc acgcgttgtc gcgtagcagg atcaatggca taggccaccg acaagcgtcc
     1561 gagtttttca ggggggacca cgaagctcgt gtccgccatt gcaagtggct cgaagatacg
     1621 cgtacggaag aacgcttcaa gcgacatgcc gctgaggcgc tgaatcagcg cgccgaggac
     1681 atcggtggag atgccgtagt gccagcgcgt gccgggctgg aacatcaggg gtagttcggc
     1741 c
//
LOCUS       DATGBK010000369         2883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_305322, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000369 DATGBK010000000
VERSION     DATGBK010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305322"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2446)
                     /locus_tag="VKJ77_05370"
     CDS             complement(<1..2446)
                     /locus_tag="VKJ77_05370"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HMC44738.1"
                     /translation="MQKLFAYPVLADLARAIERDTLTTVHGGISTRPEGMLNIPLSPA
                     QERLWFFSRLSPQSPAYNLAGAVKLEGALDRDILRKAVSALAARHESLRTRFIEVDGV
                     AMQQVDVVEPGWSVLDLEDVPQESRANRVADTVHAISRAPFSLEEGPLFRVTLIRLGD
                     CEHVLHFVTHHIISDAWSNRIILDEFSRLYTAIRQGQTHQLAPLPVQYADYALWQNDA
                     QQQARADAELTFWRERLGGELTVLDLPFDRSPPASRNQAGARVDVRLAAPLIDAVRAL
                     SRRHQATPFMVLLAAFDVLLARYSGQADIRVGVPVAGRDRLETQSLIGFFVNTVVIRT
                     EMAGLDTVETLLRHVRERVLEAQTHQDVPFARVVDALNPGRSLTQTPLFSVMFNYDHG
                     TEGEGLSLPGLRVSPIETSTGTARFDLVLSVRERHDGITVSLNYARDVFDAQTIERML
                     GHYVSLLEQIATKDHAYLAELVLDVDVSQPALSAHAFVPAGERIASQARRQPQAPAVH
                     CEGMSLSYGELDDWSNRVARTLNARGIGAETRVGLCLTRSVGLVAALVGVLRSGAAFV
                     PLDPAYPTERLRTMMDDAQLSCVLGDAATFATCGPLFAGREVIDINALEPSAANPIDV
                     HIHPEQLAYVIYTSGSTGRPKGVAISHVALSRHLDDFIGTYGIDAADIQLQSSTINFD
                     VALHEMLPALMQGGQVEMRGPQLWDIQTTSRHLKDGRVTFARIPTAYWQQWLRTPPPL
                     NDLASLRQITVGGEGLPGDALAQWRNGPLARIRLDNLYGPTETTVACMYRETRAADTA
                     QAIVSIGEPYGSRIVYV"
     gene            complement(2468..>2883)
                     /locus_tag="VKJ77_05375"
     CDS             complement(2468..>2883)
                     /locus_tag="VKJ77_05375"
                     /inference="COORDINATES: protein motif:HMM:NF024591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HMC44739.1"
                     /translation="EAQLLAQPEVSEAVVVAHEGRLVAYVSCLAGQTVDVAALAGQLR
                     EKLSMVLPEYMVPGLVMVLERLPLNTNGKVDRHALPLPAQTEKIREVPRGDMEAVLAG
                     VWQDVLRVERIGRHDNFFEMGGQSLLALRAVAALR"
BASE COUNT          584 a          940 c          849 g          510 t
ORIGIN      
        1 tcacatagac aatccgcgac ccatacggct cgccgatcga tacgatcgcc tgcgccgtat
       61 ccgctgcgcg cgtctcgcga tacatgcaag ccaccgtcgt ctccgtcggg ccgtacaggt
      121 tgtccaggcg gatgcgcgcg agcggcccgt tgcgccactg cgcgagtgca tcgccgggaa
      181 gtccctcgcc gccaacagtg atttgccgca acgaagccag gtcgttcaaa ggcggcggcg
      241 tacgcaacca ttgttgccag tacgcggtcg gaatccgcgc gaacgtgacg cggccgtcct
      301 tcagatgacg gctggtcgtc tgaatgtccc atagctgcgg accgcgcatc tcgacctgac
      361 caccctgcat cagcgccggc agcatttcat gcaacgccac gtcgaagttg atcgtcgacg
      421 attgcaactg gatgtcggct gcatcaatgc catatgtgcc gatgaaatca tccagatggc
      481 ggctcagcgc aacatgactg atcgccacgc ctttgggccg tcccgtcgag cccgatgtgt
      541 agattacata ggccagttgt tcgggatgga tgtggacatc gattggattg gcggccgatg
      601 gttcaagcgc attgatgtcg atgacctcgc ggccagcgaa gagcggcccg catgtcgcga
      661 acgtggccgc atcgccgagt acgcacgaca gttgcgcgtc atccatcatg gtgcgcagac
      721 gctcggtcgg ataggctgga tcaagcggca cgaaagccgc gccggaccgg agcacgccaa
      781 cgagcgccgc gaccaatcct accgagcgcg tcaggcacaa ccctacgcga gtctcggcac
      841 ctattcctcg cgcattcagc gtccgcgcaa cgcggttcga ccagtcatcg agttcgccgt
      901 aagaaaggct catcccctcg caatgcacgg caggagcctg aggctggcgc cgcgcctgcg
      961 aagcgatgcg ttcgccggcc ggcacgaacg cgtgagcgct gagcgcaggt tggctcacgt
     1021 ctacatcgag cacgagctca gccagatacg catgatcttt cgtcgcgatc tgctccagca
     1081 gcgagacata gtggcccagc atccgttcga tcgtttgagc gtcgaacaca tcgcgggcat
     1141 agttcaacga gaccgtgatc ccgtcgtgcc gttcacggac cgacagcaca agatcaaaac
     1201 gcgccgtacc agtcgatgtt tctatcggcg agacccgcag gccaggcaag ctgagccctt
     1261 caccttccgt gccgtgatcg tagttgaaca tgacgctgaa gagcggcgtc tgcgtcaggc
     1321 ttcggccggg attcaacgca tcgacaacgc gggcgaacgg tacgtcctga tgcgtctgcg
     1381 cttcgagcac ccgttcgcga acgtggcgca gcagcgtttc gacggtatcg agtcccgcca
     1441 tctccgtgcg gattaccacc gtgttgacaa agaagccgat cagcgattga gtctcaagcc
     1501 ggtctcgccc cgcaacaggc acaccgacgc ggatatcagc ttgcccgctg taacgcgcga
     1561 gcaggacatc gaaggcagcc aacagcacca tgaacggcgt cgcctgatgc cggcgcgaga
     1621 gcgctcggac tgcatcgatg agcggcgccg cgagcctgac gtcgacccgt gcgcctgcct
     1681 gattgcgcga cgccggcggc gagcggtcga acggcagatc aagcaccgtc agttcgccgc
     1741 caagccgctc acgccagaac gtgagctctg cgtcggcgcg tgcttgctgt tgcgcatcgt
     1801 tttgccagag cgcgtagtca gcgtactgga ccggcaacgg tgcaagctga tgcgtttggc
     1861 cttgacgaat cgccgtataa agacgcgaga actcgtcgag gatgatccgg ttcgaccatg
     1921 catccgagat gatgtgatgc gtcacgaaat gaagcacgtg ttcgcagtcg ccaagccgga
     1981 tcagcgtgac gcgaaacagc ggtccttctt ccagggagaa aggcgcgcgg gagatcgcat
     2041 gcacggtgtc ggctacgcgg ttggctctac tctcctgcgg gacgtcttca agatcgagca
     2101 ccgaccaacc tggctcgaca acatcgactt gctgcatcgc cacgccatcg acctcaatga
     2161 aacgcgtgcg cagactttca tgacgagcag cgagggccga gaccgctttc cgcaggatgt
     2221 cgcggtcgag cgcgccttcc agtttcaccg cacccgcaag gttgtatgcg ggactctgcg
     2281 gactgaggcg cgagaaaaac cacaaccgtt cctgtgccgg cgacaacggt atgtttagca
     2341 ttccttctgg tcttgtggag atcccaccgt gcaccgtggt cagtgtatcc ctctcgatcg
     2401 cacgcgccag atccgcgagc accgggtagg cgaacaactt ctgcaccggc aactcaacgc
     2461 gcaacgctta acgcagcgcg gctaccgcgc gcaatgccaa caacgactgc ccgcccattt
     2521 cgaagaagtt atcgtgacgg ccgatacgct ctacgcgcag cacgtcctgc cagacgccag
     2581 cgagcacggc ttccatatca cccctcggca cttcccggat tttctcggtc tgagcaggca
     2641 gcggcaaagc gtgacgatcg accttgccat tcgtgttgag cggcaggcgc tccagcacca
     2701 tgacaagacc aggcaccatg tactctggca acaccatgct gagcttttct cttagctggc
     2761 cggcgagcgc ggcgacatcc actgtctgcc cggccaggca cgaaacataa gccaccagtc
     2821 gaccctcatg cgccacgaca accgcctcgc ttacctccgg ctgcgccagc aactgcgcct
     2881 cga
//
LOCUS       DATGBK010000370         1799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_4068, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000370 DATGBK010000000
VERSION     DATGBK010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4068"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..441)
                     /locus_tag="VKJ77_05380"
     CDS             complement(<1..441)
                     /locus_tag="VKJ77_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline/glycine betaine ABC transporter
                     permease"
                     /protein_id="HMC44740.1"
                     /translation="MTSIFPHLSLADPINDKVALLVQNYGDAFHSFSLVVLKYLLVPL
                     ESGLRITPPWLLLLLAGLLAWHATRKLSLAALFVLLLYAIGAFGLWDKLMQTLALMLV
                     ATVLSVLLGVPLGIFTSRSAWLRRILLPVLDIMQTLPSFVYLIPV"
     gene            complement(491..1528)
                     /locus_tag="VKJ77_05385"
     CDS             complement(491..1528)
                     /locus_tag="VKJ77_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006397709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44741.1"
                     /translation="MLKRFFKASISALVVAAASAGTAHAAGTFCSSGKTVHFAGITWE
                     SGAFATEVLRQILEKGYGCATDVVPGSTAATETALASNDVQVWAEQWTGRSEITSKAV
                     AAGKVKLVGDTMPGGTKEGWFVPEYVIKGDASRNIKASAPGLVSVTDLPKYKELFADD
                     EEPEKGRFLNCPTGWDCERVNTRLLKVLSLDASYTNFHPGTGAALDASIESAYQRGKP
                     LVFYYWGPAALMAKYKFVELKMPAYNDACWKTLRDESSTKQCASSYMVSHVTVGVSTP
                     FSEAEPQAIEMFSKVRFPMDFLNSTILEMTSKKIDGSAMATTFLRTHPEMWKTWVPAD
                     VAAKVQAKLGT"
     gene            complement(1589..>1799)
                     /locus_tag="VKJ77_05390"
     CDS             complement(1589..>1799)
                     /locus_tag="VKJ77_05390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HMC44742.1"
                     /translation="EYPYIVHREDNEAKGYDGVIEPGMTLCIESYIGHEAGGEGVKLE
                     EQVYIRDDGRVELLSDYPFEARLLA"
BASE COUNT          351 a          557 c          525 g          366 t
ORIGIN      
        1 caccgggatc aggtacacga aactcggcag agtctgcatg atgtcgagca ccggcagcag
       61 gatgcgccgc aaccacgcgc tgcgcgaagt aaagatgcca agcggcacgc cgagcagcac
      121 cgacagcacg gtcgccacca gcatcagcgc gagcgtctgc atcagcttgt cccacagccc
      181 gaacgcgccg attgcgtaaa gcagcagcac gaacagcgcg gccagcgaga gcttgcgcgt
      241 ggcgtgccat gcgagcagac ctgcgaggag taacagcagc cacggcggcg tgatccgcaa
      301 gccgctttcc agcggcacca gcaaatattt cagcacgacc aggctgaacg agtggaaggc
      361 atcgccatag ttctggacca gcaatgcgac cttgtcgttg atcgggtcgg caagcgacag
      421 atgcggaaag atggacgtca tggttcactc gtcttgggaa gggtcgcggt gaaacggaaa
      481 gggcccgcta ttacgtgccc agcttggcct gcaccttggc cgctacatcg gccggcaccc
      541 aggtcttcca catctcggga tgcgtgcgca ggaacgtggt ggccatggcc gatccgtcga
      601 ttttcttcga tgtcatctca aggatcgtgc tgttcaggaa gtccatcgga aagcggactt
      661 tcgagaacat ctcgatggct tgcggttcgg cttcgctgaa gggcgtcgag acacccacgg
      721 tcacgtgcga caccatgtat gacgaagcac attgcttcgt gctgctttcg tcgcgcaggg
      781 tcttccagca ggcgtcgtta taggccggca tcttgagttc gacgaacttg tatttcgcca
      841 tcaacgcagc cggtccccag taataaaaca ccagcggctt accgcgctga taggccgatt
      901 cgatcgatgc atcgagcgcc gcgcccgtgc ccgggtggaa gttggtgtat gacgcatcga
      961 ggctcagcac cttgagcaaa cgcgtattca cgcgttcgca gtcccagcct gtcggacagt
     1021 tcaggaaacg gcccttttcc ggttcttcat catcggcgaa cagctccttg tatttcggca
     1081 ggtccgtgac ggaaacaagc cccggcgcgc tggctttgat gttgcgggac gcatcgccct
     1141 tgatcacgta ttcgggcacg aaccagccct ctttcgtgcc gcccggcatc gtgtcgccga
     1201 ccagtttgac ctttccggca gcgaccgctt tcgatgtgat ctcgctgcgg ccggtccatt
     1261 gctcggccca gacctgcacg tcgttgcttg ccagcgcggt ctcggtggcg gccgtgctgc
     1321 cgggcacgac atccgtagcg cagccatagc ctttttcaag gatttgccgc agcacttcgg
     1381 tcgcaaacgc gccgctttcc cacgtaatgc ccgcaaagtg cacggtcttg cccgagctgc
     1441 agaaagtccc tgcggcgtgc gcagtgccgg cgctagccgc agccacgacc agcgccgaaa
     1501 tgcttgcttt gaagaatcgt ttgagcatcg tcttgcacct atggggttgg tttgttatcg
     1561 atttctagtg acgcggcgtg tgtgagaatc aggccagcaa cctggcctcg aacggataat
     1621 ccgagagcag ttcgacgcgg ccgtcgtcgc gaatgtagac ctgctcttcc agcttcacgc
     1681 cctcgccgcc ggcctcgtgt ccaatatagc tttcaataca cagagtcatg cccggttcaa
     1741 tcacgccgtc ataccccttg gcctcgttgt cctctctatg cacgatgtac ggatactcg
//
LOCUS       DATGBK010000371         2226 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_97105, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000371 DATGBK010000000
VERSION     DATGBK010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97105"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..798
                     /locus_tag="VKJ77_05395"
     CDS             <1..798
                     /locus_tag="VKJ77_05395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HMC44743.1"
                     /translation="YQLVKVLQKHGHIVGMCGDGANDAPALRQAQMGIAVLSATDVAK
                     SAAGVVLTEAGLCGIVALVEEGRTTFQRILTYTLRSIIHKIVQVLFLAAGLLMTGHAI
                     LTPALMVLMMVTGDFLAMSSSTDNVRPSPRPNIWHIRNLTLAGIAMGMIDLLFCIGTL
                     ATGKFVLGLDTDSLRTLAVVTLVFSGQAVFYVARERQRMWRSVPGRWLLASSVVDVVI
                     ITLLASNGLLMKALPLQIIAGVLCAAVVLAVVLDSAKLLLFRRLAVT"
     gene            complement(903..>2226)
                     /locus_tag="VKJ77_05400"
     CDS             complement(903..>2226)
                     /locus_tag="VKJ77_05400"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC44744.1"
                     /translation="ALRELLEELVPQRTSVRDYQITHEFPGIGLRTMQLSAMRIAWPA
                     QALILLTIADVTQQHQAFGRLQSADQQKDEFLAMLAHELRNPLAAIRNGLQVWERDSA
                     DKETQKIARLGAQRQLDHEIRLVEDLLDVSRITRGIIILKTESIDLVETVRRAIEAMR
                     PEFEAYAHEITLAFPTGVLPIKGDAMRIEQVMTNLLGNAIKYTPHGGHIRISIERYLD
                     DAVLTVVDSGIGMTAELIPTIFDIFVQAERSLDRKAAGLGLGLALVHRLVGLHGGDVR
                     AYSEGPNRGSKFVVRLPAMPHGTAAEEPVHVALHSVPSPGTMRILVVDDNLDALESSA
                     ALLRIDGHEVETARDGPSALLCVEQFKPEVVLLDIGLPDMDGYEVARRIRSMPGQHDT
                     LLIAHSGYGEEEHLQRATQAGFDHHLIKPADLSQLSALVALYRERRVR"
BASE COUNT          412 a          685 c          661 g          468 t
ORIGIN      
        1 taccagctcg tcaaagtgct gcagaagcac ggccatattg tcgggatgtg cggcgacgga
       61 gcgaacgacg cgcccgcgct ccggcaggcg caaatgggta tcgcggtatt gagcgccacc
      121 gacgtggcga aatcggcggc aggcgtcgtg ctgaccgaag cgggtctgtg tggcatcgtc
      181 gccctggtcg aggaaggccg caccaccttc cagcgcatcc tgacctatac gttgcgctcg
      241 atcatccaca agatcgtgca ggttctgttt ctcgcggccg gcctgctcat gaccggtcac
      301 gcgatactga cgcccgcact catggtgctc atgatggtga cgggcgactt tctcgccatg
      361 tcgtcatcca ccgataatgt gcgcccctcg ccgcgcccga acatctggca tatacgcaac
      421 ctgacgctgg cgggcattgc aatgggcatg atcgatctgc tcttctgcat aggaaccctc
      481 gcgaccggca agttcgtact tggtctcgat acagactcgc tacggactct cgccgtcgtc
      541 acgttggtgt tcagtggaca ggccgtgttt tacgtcgcac gtgaacggca gcgcatgtgg
      601 cgttccgtgc ccggacgatg gctgctcgcg tcctcggtcg tggacgtggt aatcattacc
      661 ctgcttgcgt ccaatggatt gctcatgaag gcattgccgc tgcagatcat tgcaggcgtg
      721 ttatgcgccg ctgtcgtgct ggccgtcgtt ctggatagcg caaagcttct gctctttcgc
      781 cgcctcgcag ttacttgaac acaggcaagt ccgttgtctc gtccattgcc tcagcgagcg
      841 agtaataaat gttgctcctt tgaaggaccg tggcgcaggt gctgatgaaa cccgccgcct
      901 actcagcgaa cgcgtctctc gcgatacagt gcgaccagtg cactcaactg gctgaggtcg
      961 gccggcttga tcaggtggtg gtcgaaaccc gcttgcgtgg ctcgctgaag atgctcctcc
     1021 tcgccatacc cgctatgggc aatcagcaag gtgtcatgtt gacccggcat cgaacgtatg
     1081 cggcgagcga cctcgtagcc atccatatcg ggcaggccta tatcgagcag caccacctca
     1141 ggtttgaatt gttcaacgca gagaagcgcg gacggaccgt cgcgcgcggt ctccacttcg
     1201 tgtccgtcga tccttagcaa agcagcgctg ctctccagcg catcaagatt gtcgtccacg
     1261 accagaatgc gcatggtgcc aggcgacggt acggaatgaa gcgccacatg caccggctct
     1321 tcagccgccg tgccgtgcgg catggctggc aggcgcacca cgaacttgct gccccggttg
     1381 ggcccttcgc tgtatgcgcg cacgtcgccg ccatgcaatc cgaccaggcg atgcaccagc
     1441 gcgaggccaa gaccgagacc cgcagccttg cgatccagcg aacgttcggc ctgcacaaag
     1501 atatcgaaga tcgtcggaat gagttcggcc gtcatgccaa tgccgctgtc gaccacggtc
     1561 aggaccgcgt catcgagata gcgctcaatc gaaatccgga tatgaccgcc gtgcggcgtg
     1621 tatttgatcg cgttgcccaa caggttcgtc atgacctgtt cgatccgcat ggcatcgccc
     1681 ttgatgggca gcacgcccgt tggaaaagcg agcgtgattt catgcgcgta agcctcgaat
     1741 tccggacgca tggcctcgat cgctcgacgt accgtctcga cgagatcaat cgactcagtc
     1801 ttgagaatga tgatgccccg cgtgatcctc gacacatcca gcaggtcttc aaccagacgg
     1861 atctcgtggt cgagttgccg ctgtgcaccc aggcgtgcaa tcttctgcgt ttccttgtca
     1921 gcgctgtccc gctcccagac ctgcaggccg ttgcgaatgg ccgcaagcgg attgcgcaac
     1981 tcgtgggcga gcatcgcgag gaactcgtct ttttgttgat cagcggattg caagcggccg
     2041 aatgcctggt gctgctgggt tacatcggcg atggtgagca ggatcaacgc ctgcgcgggc
     2101 cacgcaatgc gcatggcgct gagttgcatc gttcgtagcc cgatgcccgg gaattcgtgc
     2161 gtgatctgat agtcgcgaac gctcgtcctt tgcggcacca gttcctcgag cagttcacgc
     2221 agcgcg
//
LOCUS       DATGBK010000372         1924 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_236150, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000372 DATGBK010000000
VERSION     DATGBK010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236150"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..860)
                     /locus_tag="VKJ77_05405"
     CDS             complement(<1..860)
                     /locus_tag="VKJ77_05405"
                     /inference="COORDINATES: protein motif:HMM:TIGR00444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG family protein"
                     /protein_id="HMC44745.1"
                     /translation="MLRIVGLGPGDPDLLTLGSRESLRAVGRVATVMAPPELALFLES
                     DGVVIERALIDDQDLFLRGSTEVIDGFVRRIDARPLALGVLGNPLSDFPGLPILLRAL
                     DTRNIQAEIVPGMPRATLSASITMPLVPLPPGSTHHNWDDLVEIMARLRRSCPWDREQ
                     THESLVRYLIEETYEVVEAIEAKDENELCEELGDLLFQIVFHSQLATERGKFSVADVI
                     DALSNKMVRRHPHVFGDVAVANVDQVWANWEQLKSLEKTGLSRSSKLDGIPEALGALQ
                     RGQKMQEKAAR"
     gene            complement(925..1887)
                     /locus_tag="VKJ77_05410"
     CDS             complement(925..1887)
                     /locus_tag="VKJ77_05410"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HMC44746.1"
                     /translation="MSNLKRVIATLATGALCLSLAACANGGSGGDIASVNGQKLSRAT
                     YFEKLESTPPAKPTLAQMIQGALIDQYAKDNKIDASGAEIQKKEDDIKARMPAGQFDQ
                     IVAQQHYTPADLSAIFRQQIVMQKAVAPQVHVSETDIKAFFAKNHAMLDKKAQVRARH
                     ILLADLKTANEVEAKLKAGGKFDDLAKQYSTDPSNKDKGGELGWFGEGQMDPHFQAAA
                     FSAAVGSITAPVKSPFGYHIINVEEKKPAVKATLANQHDVIRDQLKGQQETAQYPAFL
                     AGLRQKAKIDIYDPKLADAMGPMPVVPPAAASPAAAPAPAASAK"
BASE COUNT          357 a          552 c          600 g          415 t
ORIGIN      
        1 cgcgcggctt tttcttgcat cttctgaccg cgttgcagag cgccgagtgc ttcgggaatg
       61 ccgtcgagtt tcgacgaacg cgataagccg gttttttcca gtgattttag ctgttcccaa
      121 ttcgcccaga cttgatcgac attggccacg gccacatcgc caaacacgtg cggatggcgg
      181 cgcaccatct tgttcgagag cgcgtcgatc acgtcggcga ctgaaaattt accgcgttcg
      241 gtcgcgagtt gtgagtgaaa gacgatttga aacaagaggt cgccgagctc ttcgcacagc
      301 tcgttctcgt ccttggcttc gatcgcttca acgacttcgt acgtctcttc gatgaggtag
      361 cgcacgagcg attcgtgcgt ctgttcgcga tcccacgggc acgagcggcg caaacgcgcc
      421 atgatctcaa cgagatcgtc ccagttatgg tgcgtcgagc cgggcggcaa cggaacgagc
      481 ggcatcgtga tcgaggctga caacgtcgcg cgcggcatgc cgggcacgat ttctgcttga
      541 atgttgcgcg tatcgagcgc ccgcaataag atcggcaacc ccggaaaatc ggagagcgga
      601 ttgcccagca cgcccaacgc tagcggacga gcgtcgatgc ggcgtacgaa gccgtcgatc
      661 acttcggtcg agccgcgtaa aaacaaatcc tgatcgtcga tgagggcgcg ctcgatgacg
      721 acgccgtcac tttccagaaa gagcgcgagc tcgggcggcg ccatcaccgt ggcgacgcgt
      781 ccgaccgctc gcagcgactc gcggctgccg agcgttagga gatcggggtc tcccggaccg
      841 agccctacga tgcgaagcat ggacgggcga gattccccga ggcgggtccg aaggactgcc
      901 gccccgggat ctgcgatgac tgggctactt agctgatgcg gccggggcgg gagctgcagc
      961 aggcgacgct gcggccgggg gcacgacggg catcggaccc atcgcatccg ctaacttggg
     1021 atcgtagata tcgatcttcg ctttttggcg caagccggcc aggaacgccg gatattgcgc
     1081 ggtttcttgc tggcctttga gctgatcgcg gatgacatcg tgctggttgg caagcgtagc
     1141 tttgacggcc ggtttcttct cttccacgtt gatgatgtgg tagccgaacg gcgatttcac
     1201 gggtgccgta atcgagccga ccgctgccga gaatgccgca gcttggaagt gcgggtccat
     1261 ctggccttca ccgaaccagc ccagctcgcc gcccttatct ttgttcgaag gatcggtcga
     1321 atattgcttg gcgagatcgt cgaacttgcc gccggcttta agcttggctt cgacttcgtt
     1381 cgcggtcttc agatcggcca acagaatgtg gcgtgcgcgc acttgcgcct tcttatcgag
     1441 catcgcgtga ttcttagcga agaacgcctt gatgtcggtc tccgaaacgt gaacctgcgg
     1501 agcgacggcc ttttgcatca cgatttgctg gcggaagatg gcgctcaaat ccgccggggt
     1561 gtaatgttgc tgcgcgacga tctggtcgaa ctggcccgcc ggcatacgcg ccttaatgtc
     1621 gtcttctttt ttctgaatct cggcgcccga agcatcgatc ttgttgtctt tggcgtattg
     1681 atcgatcaac gcgccttgaa tcatctgcgc tagcgtcggc tttgcaggcg gcgtggattc
     1741 gagcttctcg aagtacgtcg cacgcgaaag tttttggccg ttaaccgagg cgatatcgcc
     1801 gccggaaccg ccgttcgcac aggcagcaag tgagaggcag agcgcgccgg tcgcaagggt
     1861 cgcgatgacg cgtttaaggt tcgacatggt tctccagact caggatttcg gggcaaacag
     1921 gacg
//
LOCUS       DATGBK010000373         3243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_28005, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000373 DATGBK010000000
VERSION     DATGBK010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3243
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28005"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..417)
                     /locus_tag="VKJ77_05415"
                     /pseudo
     CDS             complement(85..417)
                     /locus_tag="VKJ77_05415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190821.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            complement(559..2001)
                     /gene="otsA"
                     /locus_tag="VKJ77_05420"
     CDS             complement(559..2001)
                     /gene="otsA"
                     /locus_tag="VKJ77_05420"
                     /EC_number="2.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007000202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate
                     synthase (UDP-forming) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalose-phosphate synthase
                     (UDP-forming)"
                     /protein_id="HMC44747.1"
                     /translation="MSRLIVVSNRVAPIQEGKPAAGGLAIGVLDALKETGGVWFGWSG
                     EIVGEASAPVIEKRGNVTYATVGLTRRDYDQYYRGFSNATLWPTFHYRNDLSRFDREE
                     YAGYARVNEALAKQLKPLLEPDDIIWVHDYHLLPFAQECRAAGIKNPIGFFLHIPFPV
                     PEILRTVPPHEELIKAMCSYDIVGFQTEADKQSFVDYIERGHLGHLSEDGMLQAHGRM
                     LKVGAYPIGIYPDAIAKVAEQFSNRKPVKSLRDSLRGRKLIMSVDRLDYSKGLAERFQ
                     AFERLLLHAPGWHGRVSMVQIAPPTRSDVQTYQRIRQNLEGEAGRINGRFAQLDWTPI
                     QYLNRKYDRSLLMALFRLSQVGYVTPLRDGMNLVAKEYVASQDPADPGALVLSQFAGA
                     ADQLPGALVVNPFDLSQMSEALERALSMPLAERQARHTDMMAPLRENNLSVWRDSFLT
                     DLRSVATAASVTKKAVRQVTEAKHPARVAS"
     gene            complement(2200..2463)
                     /locus_tag="VKJ77_05425"
     CDS             complement(2200..2463)
                     /locus_tag="VKJ77_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44748.1"
                     /translation="MRHPALRRSARHSSKRDARPDPAKIIPPEAAAVPADPVSPGNPQ
                     SSHDPAAQNRPAPGVPPDGDHNQGGIRKEGLDYQRDLGSEQDA"
     gene            complement(2633..2917)
                     /locus_tag="VKJ77_05430"
     CDS             complement(2633..2917)
                     /locus_tag="VKJ77_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44749.1"
                     /translation="MTDPASLQRQPRNVLHVWQVLRVSRSPHLMPVHAQTPQPPDPPF
                     NPDTPPSPSPQEPPDTIPDPTREPPSPPSQPIGDPPPGPNETPHVSDTLH"
BASE COUNT          617 a         1021 c          937 g          668 t
ORIGIN      
        1 tttggacgca aaacggcgcg ccctgacggg cgcgccgttt tgcagcgctt gcttcctaaa
       61 gctcttcgtc gcgggggctt cctcgcctgc cgggtcggcg gtttcgtcgt ctattgcgcg
      121 cgcctcgtct tccaccccgt ccggcaggat gtccgagtcg ggttcaagat tgttgtcacc
      181 atcggcggac gccatctcgc ccgttccatt ccggtccgtg tcgctgttca gctcggctgc
      241 ggactggccg atggcgtgcg cgtcgagttc gtcctcgata tcgcccggat aacgcttctc
      301 gccctgcaca tccgagccgc tatcggacga atcgctgggg cccaatgcgc cggtcccatg
      361 tcccttgcca acttctacgc caccttcttc atccgggtcc aatgtgcttc cactcatgat
      421 cgcctcctga tgaacgtctc ttcggcgacg caagtcccgt tccgcactca tcgacgccac
      481 gaagaaaaag ccccgcggcg gtttatcggc gcggggctgg attcatctga ggtattaact
      541 caatacttga ctctgcgctt agctcgctac gcgcgccggg tgtttcgcct cagtcacttg
      601 gcgcaccgct ttctttgtca ccgacgcagc cgtcgcgacg ctgcgcaaat cggtcaggaa
      661 cgagtcgcgc cacaccgaca gattgttctc acgcaacggc gccatcatgt ccgtatgacg
      721 cgcctggcgc tctgcgagag gcatcgacaa cgcccgctcc aatgcctcag acatctgcga
      781 caggtcgaac ggattgacga ccagcgcacc tggcaactga tccgctgcgc cggcaaactg
      841 cgacagcacg agcgcgcctg gatcggccgg gtcctgcgac gccacatatt cctttgccac
      901 gagattcatc ccgtcgcgca acggcgtgac gtacccaacc tgcgacaacc ggaacaatgc
      961 catcaacaaa ctgcgatcgt atttgcggtt gagatactga atgggcgtcc agtcgagttg
     1021 cgcaaaacgg ccgttgatac gcccagcctc gccttccagg ttctggcgga tgcgctggta
     1081 cgtctggacg tccgaacgcg ttggcggtgc aatctgcacc atcgataccc gcccatgcca
     1141 ccccggcgca tgcagcagca accgctcgaa tgcctggaaa cgctcggcaa gccctttcga
     1201 ataatcgagc cggtccacgc tcatgatcaa cttgcgcccg cgcagactgt cgcgcaggct
     1261 cttcaccggc ttgcgattgg aaaattgctc ggcgaccttt gcaatggcat ccggatagat
     1321 accgatagga taggccccga ccttcaacat gcgcccatgc gcctgcagca tcccgtcttc
     1381 gctgagatgc cccaagtgcc cgcgctcgat gtaatcgaca aacgactgct tgtccgcctc
     1441 ggtctggaaa ccaacgatgt cgtagctgca catcgccttg atcagctctt cgtgcggcgg
     1501 cacggtccgc aggatttcag gcacgggaaa cgggatatgc aggaaaaacc cgatcgggtt
     1561 tttgatgccc gccgcccggc attcctgcgc gaacggcagc aagtgatagt cgtgcaccca
     1621 gatgatgtcg tcaggttcga gcaacggctt gagctgctta gccagcgcct cgttcacccg
     1681 cgcataaccg gcatattcct cacggtcgaa tcgcgacagg tcgttgcggt aatgaaatgt
     1741 cggccacaac gtggcgttgg aaaagccgcg gtagtactgg tcgtaatcgc gccgggtcag
     1801 cccgacggtc gcatacgtca cgttgccacg cttctcgatg accggtgccg aggcctcacc
     1861 cacaatctcg ccgctccagc cgaaccacac accgcctgtc tccttcagcg cgtccagaac
     1921 gccaatcgcc aaaccgcctg cagcaggttt gccttcctgg atcggcgcga cacgattcga
     1981 taccacgatc aatctgctca ttactgcttc acctcatcag ttgtcgttgc tcgttcgaat
     2041 tgatcgacag agcaatgcaa gacacgtgcc ttttttacaa tttggaaaat aaaaattgtg
     2101 aataaatgtg acagacgaac caaaacacgc ggccatcacg cgccgcgcag aagattttca
     2161 tggtggcgcg cacgggcatt ccggctgctt caaatccgac taggcgtctt gctccgaccc
     2221 gagatcccgc tggtaatcga gcccttcttt ccgaatacca ccctggttat ggtcgccgtc
     2281 cggcggtacg cccggtgctg ggcggttttg cgcggccggg tcatgcgacg attgaggatt
     2341 gccgggactg accgggtcgg ccggaacagc ggcggcctcg ggtgggatta tcttggctgg
     2401 atcgggccgc gcgtcacgct tcgatgaatg gcgtgctgaa cgacggagtg cggggtgcct
     2461 catgggtgcc tccagaaaga aggccgtcgg agaagtgttc ggcggcggat taccaacaaa
     2521 atccagcagg atcgaccagg ttcggtgcat tcacccggtc attcttgcct aatgcgttgt
     2581 aatgcctaca gcgacgatga aatatgttca ttgcgttcgc taaccagcgg tttcaatgca
     2641 gcgtgtccga gacatgcggt gtttcgttcg gtccaggagg cggatcgccg atcggctgac
     2701 tcggcggtga cggcggctcg cgggtcggat cgggaatggt gtccggaggt tcttgcggcg
     2761 agggcgacgg cggcgtgtcg ggattaaacg gcgggtctgg cggctgcggt gtctgggcgt
     2821 gaaccggcat caaatgcggc gatcgtgaaa cacgcaacac ttgccagaca tgcaatacgt
     2881 tccggggttg gcgttgaagc gaggcaggat cggtcatggc gggctccctg gatcttttga
     2941 tgatgacact cgttcggatc gcgcgcagcg gccgatccgg ccaaggactc tcgagctcag
     3001 actcctgcgg ccaaaggtac cggaccgccc acgagccaag ccattcagtc gcagcaaggg
     3061 ccatgccccg ggttcaagtg cctttcgcat tcaacccacg ggccttccga cattatcggc
     3121 gctgcgttcg cgcgctccaa cgaaaatcgc ccgtccaaag cggacatctt tcgaagtccc
     3181 aatgagacgg gcgtttgact cgcgcttgag tcacgcttga ctcacgcttg agtcagtcag
     3241 cgc
//
LOCUS       DATGBK010000374         2161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_212733, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000374 DATGBK010000000
VERSION     DATGBK010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212733"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VKJ77_05435"
     CDS             <1..220
                     /locus_tag="VKJ77_05435"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HMC44750.1"
                     /translation="NSLEIHDDAVGHGQRVLIVDDLLATGGTIAATQRLLAKLGADVI
                     GVAVLIELVALGGRKSLGSADVTSFITY"
     gene            285..>2161
                     /locus_tag="VKJ77_05440"
     CDS             285..>2161
                     /locus_tag="VKJ77_05440"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HMC44751.1"
                     /translation="MTLADLIAKVQQYDPTLDGAWLTSVYDLADTAHDGQLRASGERY
                     IDHPLHVAEILADLEMDRATIAAALLHDVVEDTVVTSEEVRETFGPEIAALVDGVTKL
                     TRIPYQSKEDAQVENLRKMFMAMAKDIRVIIIKLADRLHNMRTLASLAPAKQQAIAKE
                     TVEIYAPIAHRLGIWRIKWDLEDLALRYLDPDAYRDIADRVAKKRGEREASVTSVIDE
                     LSSQFAAVKLDADISGRPKHFFSIHKKMSKGRDFSTIYDLTAVRIVVETVKDCYGALG
                     VVHSLWKPLPGRFKDYIAMPKPNMYQSLHTTVVGPGGDPLEVQIRTVEMHRTSEYGIA
                     AHWRYKEGVKTDNFENKLTWLRSLLEWQNDMSDSRVFMENLKIDLFDNQVFVFSPKGD
                     VYSMPSAATPLDFAYQVHTNVGNHCIGAKINGKIVPLDYQLKNGDIAEILLNKSSGRP
                     SLDWLSMVKTSSAKHKIKQWFRKEKKEENAVVGQEAVEAELARQGLRPDAARGEAIEK
                     IAKRLNYATAADMFAAVGFGDTTAHSVVQRLREELKTDNVVDFAALAKPAPAKRIARS
                     KSGIRIAGVDDVLVRLSKCCSPVPGDPIMGFVTIGRGVSVHRADCPNVAYMNGAPERI
                     L"
BASE COUNT          468 a          645 c          642 g          406 t
ORIGIN      
        1 gaattcgctt gaaatccacg acgatgccgt gggtcacggc cagcgcgtcc tgatcgtcga
       61 cgacctgctg gcgaccggcg gcaccatcgc tgcgacgcag cggctgctgg ccaaactcgg
      121 ggccgacgtg atcggcgtcg cggtgctcat cgaactggtc gccctgggcg gacgcaagtc
      181 gctcggctcc gccgacgtta cctcgttcat cacatattga ccggcttcgg ccgtgaagcc
      241 gttggacgcg gtagcgtgtt ctggttaaga tagaggctta acccatgaca cttgccgacc
      301 tgatcgccaa agttcaacaa tatgacccca cgctcgatgg ggcttggttg acctcggtct
      361 acgatctggc cgacacggcc cacgatggcc agctccgggc ctccggcgag cgctatatcg
      421 accacccgct ccacgtggcc gagatcctgg ccgatctgga aatggaccgg gcgacgattg
      481 cggccgcgct cttgcacgat gtggtcgaag acacggtcgt gacgagcgaa gaagtgcgcg
      541 agacgttcgg gccggaaatc gccgcgctcg tcgacggcgt taccaagctc acgcgcattc
      601 cgtatcaatc gaaggaagac gcgcaagtcg aaaacttgcg caagatgttc atggcgatgg
      661 ccaaggacat ccgcgtcatc attatcaagc tggccgaccg tctgcacaac atgcgcacgc
      721 tcgcgtcact ggcgccggcc aagcaacaag cgattgccaa agagaccgtc gaaatttatg
      781 cgccgatcgc gcatcgcctc ggcatctggc gcatcaagtg ggacctcgaa gatttagcgc
      841 tgcgctacct cgatcccgac gcctatcgcg atatcgccga tcgcgtcgcg aaaaaacgcg
      901 gcgagcgtga agcgtcggtc accagcgtta tagacgaact ctcatcgcaa tttgccgccg
      961 tcaagttgga tgcggatatc agcgggcggc ccaaacattt cttctcgatt cacaagaaga
     1021 tgtccaaggg ccgcgacttc tcgacgattt acgatcttac ggccgtgcgc atcgtggttg
     1081 aaacggtcaa ggattgctat ggcgcactcg gcgtcgtgca ttcgctatgg aaaccgctgc
     1141 ccggccgctt taaagattac atcgcgatgc ccaagcccaa catgtaccag tcgctacata
     1201 cgaccgttgt cgggccgggc ggcgatccgc tcgaagtgca gattcgcacg gtcgaaatgc
     1261 atcgcacgtc ggagtacggc atcgcggcgc attggcgtta caaagaaggc gtcaagaccg
     1321 acaacttcga gaacaagctg acctggctgc gttcgctgct cgagtggcaa aacgacatga
     1381 gcgactcgcg cgtgttcatg gaaaacttga agatcgactt attcgataat caggtcttcg
     1441 tgttttcgcc caaaggcgac gtgtactcga tgccatccgc tgccacgccg ctcgactttg
     1501 cgtaccaagt gcatacgaac gtgggcaacc attgtatcgg cgccaagatc aacggcaaaa
     1561 tcgtaccgct cgattatcag ctgaagaacg gcgacatcgc cgagatcttg ctcaataaat
     1621 ccagcggacg tccgtcgctg gactggttat cgatggttaa gacgtcgagc gccaagcaca
     1681 agatcaagca gtggttccgt aaggaaaaga aagaagaaaa cgcggtcgtc gggcaagagg
     1741 ccgtcgaagc ggaattggcg cgccaaggtt tgcgccccga tgccgcgcgc ggcgaagcga
     1801 tcgagaagat cgccaagcgc ctgaattacg cgacggctgc ggacatgttt gcggcggtcg
     1861 gcttcggcga tacgaccgcg cattcggtcg tgcagcgctt acgcgaagaa ctcaagaccg
     1921 ataacgtggt cgactttgcc gcgttggcaa aaccggcgcc ggcaaaacgc atcgcgcgca
     1981 gcaaatccgg cattcgcatc gcgggcgtcg acgatgtgct cgtgcggtta tcgaagtgct
     2041 gcagcccggt tcccggcgac ccgatcatgg gcttcgtcac gatcggccgc ggcgtttccg
     2101 tgcatcgcgc cgactgtccg aacgtcgcgt acatgaatgg cgcgcccgag cgtattcttg
     2161 a
//
LOCUS       DATGBK010000375         1622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_282207, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000375 DATGBK010000000
VERSION     DATGBK010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282207"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VKJ77_05445"
     CDS             complement(<1..485)
                     /locus_tag="VKJ77_05445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011661059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HMC44752.1"
                     /translation="MTSGNDCSRVHVVIPARYGSTRLPAKPLIELAGVPMIVRVYRRV
                     RAALDALDGENGQTDVIVAIDDNRIAAVLDAYNVPALLTDAEHRSGTDRSAEVAERLG
                     WHADDLVVNVQGDEPLLPCALLTGFIAFCNADPQLRMATVAASVTDPAHLHDPNIVKL
                     VV"
     gene            complement(469..1017)
                     /locus_tag="VKJ77_05450"
     CDS             complement(469..1017)
                     /locus_tag="VKJ77_05450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015004321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HMC44753.1"
                     /translation="MSSGYRGAIRLVLFDVDGVLTDGSIYLDGEGECIKPFNVKDGVA
                     VALLRAHGIATGIVSARSSPALTLRARQLEFDVVVAGCDNKRSAYERIRSQRALQDAQ
                     IAFVGDDVIDLAAMAIAGYSCAPADAHPLVRRAAAYVTPCIGGHGVARDVADHLLALG
                     GLSLDAAYAPLIDEWSRHDVRQ"
     gene            complement(1014..>1622)
                     /gene="kdsA"
                     /locus_tag="VKJ77_05455"
     CDS             complement(1014..>1622)
                     /gene="kdsA"
                     /locus_tag="VKJ77_05455"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011350079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HMC44754.1"
                     /translation="VKLRFGVPVLTDVHEIEQAKPVAEVVDVLQIPAFLARQTDLVVA
                     IARTGRAVNIKKPQFMSPAQVKHVVNKCHEAGNHNVMLCERGSSFGYDNLVVDMLGFR
                     TMREASGGSPVIFDVTHSLQRRDAGSEASGGRREQVFELARAGLAAGVAGLFLESHEN
                     PDQARCDGPSALPLALLEAFLVQMKAVDDLVKSFAPIEEGLL"
BASE COUNT          302 a          530 c          512 g          278 t
ORIGIN      
        1 acgacaagct tcacgatgtt cggatcgtgc agatgcgccg ggtcagtgac ggacgcggcg
       61 acggtggcca tgcgcaattg cggatcggcg ttgcagaacg cgatgaatcc ggtgagcagc
      121 gcgcacggca gcagcggttc atcgccctgt acgttcacga cgagatcatc ggcgtgccag
      181 ccgaggcgct ctgccacttc cgcgcttcga tccgtacctg atcgatgttc cgcgtcggtc
      241 agcaacgccg ggacgttgta agcgtcgagc acggcggcga tgcggttatc gtcgattgcg
      301 acgatcacgt cagtctgccc attctcacca tccagtgcat ccagcgcggc cctgacacgc
      361 cggtacacgc gcacgatcat gggcacgccc gcgagttcga tcagcggctt cgcgggcagc
      421 cgcgtcgaac cgtagcgtgc gggaatgact acatgaaccc gcgagcagtc attgcctgac
      481 gtcatgtcgg ctccattcgt cgataagagg cgcgtaggcg gcgtccagcg acaagccgcc
      541 cagcgcgagg agatggtcag ccacatcgcg ggcgacaccg tgaccgccga tgcagggcgt
      601 gacgtaggcc gcagcgcgcc gcacgagcgg atgggcatcg gccggtgcgc aggaatagcc
      661 tgcgatggcc atggccgcga gatcgatcac gtcgtcgccg acaaacgcaa tctgcgcatc
      721 ttgcagcgcg cgctgcgagc ggatgcgttc gtaggcggag cgcttgttat cgcatccggc
      781 gaccacgaca tcgaactcca gttgccgcgc gcgcaacgtc agcgccgggc tcgagcgcgc
      841 ggacacaatg cctgtcgcaa tgccgtgcgc gcgcagcaac gcgacggcaa caccgtcttt
      901 cacgttgaac ggcttgatgc attcaccttc gccgtccagg tagattgatc cgtccgtcag
      961 cacgccgtcg acatcgaaca acacgagccg gatggccccg cgatagccgc tgctcacagg
     1021 aggccttcct cgatgggtgc gaacgacttg accaggtcat cgaccgcttt catctgaacc
     1081 aggaacgctt cgagcagcgc gagcggcaat gcgctcggac cgtcgcagcg cgcctggtcc
     1141 gggttctcgt gcgattcgag aaagagtccg gccacacccg cggcaagacc ggcgcgcgcc
     1201 agttcaaaca cctgttcgcg gcggccgccg gacgcttcgc ttccggcgtc gcggcgctgc
     1261 aggctatgcg tgacgtcgaa gatcacaggg cttccaccag acgcttcacg catcgtgcga
     1321 aagccaagca tatcgacgac gaggttgtcg tagccgaacg aactgccgcg ctcgcacagc
     1381 atgacgttgt gattgcccgc ctcatggcat ttgttcacca cgtgcttgac ctgtgccgga
     1441 ctcatgaact gcggtttctt gatgttgacg gcgcgtccgg tccgggcgat agccaccacc
     1501 agatccgttt gccgcgcaag gaatgcgggg atctgcagca cgtcgaccac ttccgccacc
     1561 ggcttcgcct gttcgatctc gtgaacgtcg gtcagcacgg ggacgccaaa gcgcagcttg
     1621 ac
//
LOCUS       DATGBK010000376         1569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_259231, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000376 DATGBK010000000
VERSION     DATGBK010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259231"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..948
                     /locus_tag="VKJ77_05460"
     CDS             <1..948
                     /locus_tag="VKJ77_05460"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HMC44755.1"
                     /translation="LGMDVGQAYVAKTFPPSAKQQALDMTLRMRDAYRAEMSALPWMS
                     ETTRATAIAKLNAMGFKVGYPDVWKSYAGYTVEHGNYTANVLHSIAFERAYQLGQIDK
                     PVNHNEWGMTPQTVNAYNSTSLNEIVLPAAQLQRPFFDEHADDASNLAATGAGTVGHE
                     MTHGFDDQGHKYDLHGNLTNWWTPDDLAHFDERANCVIKQFDNAIAVGDTHYQGKLVA
                     GEAIADLGGVVIGYRALESSLGNAARKSIDGYTPEQRYFIAFAQSWTESVRDESAKRN
                     ALSDPHPLPRDRVNLTLRNVPGWYTAFNCTPPPSICTVW"
     gene            complement(953..1318)
                     /locus_tag="VKJ77_05465"
     CDS             complement(953..1318)
                     /locus_tag="VKJ77_05465"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC44756.1"
                     /translation="MQTIAFVATSQPDRSKSFYSEILKFTLIEDSPYALVFDANGTML
                     RIQKVETVTLAPYTALGWKVPDIHGKVQELGAMGVTMERFQWIDQDASGVWTTPDGSG
                     VSWFRDPDGNLLSLTQFNA"
     gene            complement(1350..>1569)
                     /locus_tag="VKJ77_05470"
     CDS             complement(1350..>1569)
                     /locus_tag="VKJ77_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44757.1"
                     /translation="QPIVAYAATHPDVRVIPGRFMVIEQAVGIPKAHDAGAAYVHAFV
                     EEMKAGGFITKGLAASGQSEAVVAPPAK"
BASE COUNT          326 a          474 c          467 g          302 t
ORIGIN      
        1 ctcggcatgg acgtcggtca ggcgtacgtg gcaaaaacgt tcccgccatc cgcgaagcaa
       61 caggcgttgg atatgacgtt gcgcatgcgc gacgcgtatc gcgcggagat gtccgcgttg
      121 ccctggatgt cggagacgac gcgagcgacg gcgatcgcca agctgaacgc gatgggcttt
      181 aaggtcggct atcccgacgt ttggaaaagc tacgcgggct acactgtcga gcacggaaac
      241 tacacggcca acgtgctgca cagcatcgct ttcgagcgcg cgtatcagct ggggcaaatc
      301 gataagcccg tcaaccacaa cgaatggggt atgacgccgc aaaccgtcaa cgcctataac
      361 tcgaccagcc tcaacgagat cgtcttgccc gccgcgcaac tgcagcgccc gttcttcgac
      421 gagcatgccg atgatgcgtc gaacctggcg gcgacgggtg ccggcacggt cggtcacgag
      481 atgacgcacg gctttgacga tcaaggtcat aagtacgatc tccacgggaa cctcaccaac
      541 tggtggacgc ccgacgatct cgcgcacttc gacgaacgag cgaactgcgt gatcaagcaa
      601 ttcgataacg cgattgccgt gggggacacg cattatcaag gaaagctcgt cgcgggtgaa
      661 gcgattgccg atctcggcgg tgtggtgatt ggatatcgcg cgctcgagtc gtcgctcggc
      721 aacgcggcac gcaaatcgat cgacggatac acgcccgaac agcgttactt catcgccttc
      781 gctcagtcgt ggacggagag cgttcgcgat gagtcggcca aacgcaacgc gctcagcgac
      841 ccgcatccgc tgccgcgcga ccgtgtgaac ctgacgctgc gcaacgtacc cggctggtac
      901 accgcattca attgcacgcc gccgccgtcg atctgtacgg tttggtgacg cgctacgcgt
      961 taaactgtgt tagcgagagc aggttgccgt cggggtctcg aaaccagctg acgccgcttc
     1021 cgtcgggtgt cgtccacacg cccgaagcgt cctgatcgat ccactgaaag cgttccatcg
     1081 tgacgcccat cgcgcctaac tcctggacct tgccgtgaat atcaggaacc ttccagccga
     1141 gtgccgtgta tggggcgagc gtgacggtct caactttttg tatgcgcagc atcgtgccgt
     1201 ttgcgtcaaa cacaagcgcg tacggtgaat cttcgatcag ggtaaatttc agaatctcgg
     1261 aataaaaact tttcgagcga tccggctgcg atgtggcgac aaaggcaatc gtctgcacga
     1321 gcgttctcct ttcggatggc ttattgcggc tattttgccg ggggcgcgac caccgcttcg
     1381 gactggccgc tcgccgctaa gcccttcgta ataaaaccgc cggctttcat ttcctcgacg
     1441 aaagcgtgca cgtaggcagc gcccgcatcg tgcgccttcg gaatccccac ggcttgttcg
     1501 atgaccataa agcgaccggg aatcacgcgc acgtccggat gtgtggcggc atatgcgacg
     1561 atgggctgc
//
LOCUS       DATGBK010000377         1680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_50949, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000377 DATGBK010000000
VERSION     DATGBK010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50949"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..655)
                     /locus_tag="VKJ77_05475"
     CDS             complement(<1..655)
                     /locus_tag="VKJ77_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic peptidoglycan transglycosylase"
                     /protein_id="HMC44758.1"
                     /translation="MKRAALAFIGCLLASSANALPSFDEVRSGWRSSDWVLLARDGEP
                     LQRTRIDTTERRGDWVPLLEVSPALREAIVVSEDKRFYEHSGVDWRGAAAAAWANLWN
                     TRTRGASTVTMQLTGLIDEDRRPGRRSIGEKATQTVGALWLDHAWRKDQILEAYLNLV
                     PFRGEIVGLSALSQTLFGKLPSGLNEREAALTAALVRAPNANYAKVSARTCGILRDMN
                     "
     gene            complement(660..>1680)
                     /locus_tag="VKJ77_05480"
     CDS             complement(660..>1680)
                     /locus_tag="VKJ77_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-2-macroglobulin"
                     /protein_id="HMC44759.1"
                     /translation="IAPNQWPTSALLDYYSILSRVDGIAQRDDQRAQVEQILRARLTY
                     SGTRLVFSTAADDDLYWLMTGPESNAARTALLFADNPAWKDEMPRLVGGLLALQTNGA
                     WQTTTSNLWGKLAVQRFSKVFESTPVSGQTRIALGTTEKAIAWNAPASPANPRNVTLP
                     WASGTLNLTQEGSGKPWATIESLAAVALKAPFAAGYRITKTITPIDPAVKGTISRGDI
                     VRVHLDIDAQSDMTWVVVNDPVPAGATILGSGLGRDSEAATEGEKSPKGAWPAFVERG
                     FDGYRAYYDYLPKGKLQVEYTVRLNNAGTFGLPPTRVEALYAPSVFGAIPNATMVVAP
                     LAAAK"
BASE COUNT          295 a          544 c          522 g          319 t
ORIGIN      
        1 ggttcatgtc cctcaaaatg ccgcacgttc gcgccgatac cttcgcgtaa ttcgcattcg
       61 gcgcacgcac cagcgcggcc gtgagcgcgg cttcgcgttc gttcagcccg gacgggagtt
      121 tgccgaacaa agtctgcgac aacgccgata aacccacgat ctctccgcga aacggcacga
      181 gattgagata ggcctcgaga atctggtcct tgcgccaggc gtgatcgagc cataacgcgc
      241 cgaccgtctg cgtcgctttc tcgccgattg aacggcgtcc cggccggcga tcttcatcga
      301 tcagaccggt cagttgcatg gtcaccgtcg acgctccgcg cgtacgcgtg ttccacaggt
      361 tcgcccaggc cgctgctgcg gctcctcgcc agtcgacgcc gctgtgctcg tagaaccgct
      421 tgtcctccga tacaacaatt gcctcgcgca acgccggcga tacctccagc aaagggaccc
      481 agtcgccgcg gcgctcggtt gtgtcgatac gcgtgcgctg cagcggttcg ccatcgcggg
      541 cgagcagcac ccagtcggaa ctgcgccagc ccgagcgcac ttcgtcaaag ctcggcagcg
      601 cattcgccga gctggcaagc aggcaaccga taaaggcgag ggcggcgcgt ttcatcgcgt
      661 tatttggccg cggccagcgg agcgacgacc atcgttgcgt tgggaatcgc gccgaatacg
      721 gatggcgcgt aaagcgcttc cacgcgcgta ggcggcaacc cgaacgtgcc cgcgttgttc
      781 agtcggacgg tgtattccac ctgcaatttc cctttcggca gatagtcgta atacgcgcga
      841 tacccgtcga aaccacgctc gacaaatgcc ggccaagcgc ctttcgggct cttttcgcct
      901 tcggtcgccg cttcggagtc gcggccgagg cccgatccga ggatggttgc accggccgga
      961 acgggatcat tgacgaccac ccatgtcata tcgctttggg catcgatgtc gagatgcaca
     1021 cgcacgatgt caccacgcga gatcgtgcct ttgaccgccg ggtcgatcgg cgtgatggtt
     1081 ttcgtgatcc gataacccgc cgcgaacggc gctttcaacg cgacagccgc gaggctctcg
     1141 atggtcgccc atggtttgcc gctgccttct tgcgtcaggt tcagcgtgcc ggatgcccac
     1201 ggcaacgtca cgttgcgcgg attcgcaggc gaggccggcg cattccaggc gatagctttc
     1261 tccgtcgtgc ccagcgcaat gcgcgtttga ccgctcaccg gcgtgctctc gaacaccttg
     1321 gagaagcgct gtacggcgag cttgccccac aggttcgacg ttgtggtttg ccacgcgccg
     1381 ttcgtctgca acgcgagcaa accgccgacc aggcgcggca tttcatcctt ccacgcgggg
     1441 ttatcggcga agagcaatgc ggtgcgtgcc gcgttcgatt cggggccggt catgagccag
     1501 tagaggtcgt catcggcggc ggtcgagaag acgaggcggg tgcccgaata cgtcaggcgt
     1561 gcccgcagaa tctgctcgac ctgagcgcgc tgatcgtcgc gttgtgcgat gccatcgaca
     1621 cgcgaaagga tcgagtagta atcgagcagc gccgacgtcg gccattgatt cggcgcgatg
//
LOCUS       DATGBK010000378         1933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_97143, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000378 DATGBK010000000
VERSION     DATGBK010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97143"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /locus_tag="VKJ77_05485"
     CDS             <1..335
                     /locus_tag="VKJ77_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
                     /protein_id="HMC44760.1"
                     /translation="FQEFSFSKSTDQATPGLFAACAQGTKLGDATLSIGRNENGKFML
                     HMKYVLTNSMVSSIGTSGGGEMGDTFSLNFTQMTSQYTQQNIDSTKKGNASFGWDLSK
                     NVPVAPAA"
     gene            435..863
                     /gene="tssE"
                     /locus_tag="VKJ77_05490"
     CDS             435..863
                     /gene="tssE"
                     /locus_tag="VKJ77_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011297893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HMC44761.1"
                     /translation="MPLFDRLAASGETQFPGRNVLRHSVARDLGRLLNTRSRLTFEAF
                     GATDGSVIDYGVPDFSERSMRSGGDRDAIAAAIRHAIQLFEPRLTNVTVSFAFPSDRA
                     PDAILLIGGQIREGTGVDHVAFELAPSGHYTADPRWVEHG"
     gene            865..>1933
                     /gene="tssF"
                     /locus_tag="VKJ77_05495"
     CDS             865..>1933
                     /gene="tssF"
                     /locus_tag="VKJ77_05495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007738555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HMC44762.1"
                     /translation="MARDDILQYYKRELSYLRTQGADFAQRYPKVAARLALHGTESLD
                     PHTERLIEATAFLAARVHRDLDQEFPQVASALLDNVCPSLVQPMPSMTVAQFELDPSQ
                     GKVTAGFKVARHTGLQALTESGDACRFRTAWETMLWPLRISRAAFGDDSTLRLTLECE
                     PGVDFSELELKQLRIHLHGDWMVTMPLYELLASGVTDVSLRPESGGGVVLPASAWREV
                     GYAEADSVLPQPPHAQPAYGLMQEYFAFPRKFHFFDLHHLAGRLGTGRTCEIVLHLER
                     VPRGLGMLGAQHFKLGCTPIVNLFSQTSEPIAIDHRQYEYRLVADQRRDAMTEIHSIV
                     SVVASDPSMERSATVPGFSAID"
BASE COUNT          348 a          598 c          606 g          381 t
ORIGIN      
        1 atttccagga gttctcgttc tccaagagca ccgaccaggc aacgccgggt ctgttcgcgg
       61 cttgcgccca aggcaccaag ctcggcgacg caacgctgtc gatcggccgt aacgaaaacg
      121 gcaagttcat gctgcacatg aagtacgtgc tgaccaattc gatggtgtcg tccatcggca
      181 cgagcggcgg cggtgaaatg ggcgacacgt tctcgctcaa cttcacgcag atgacgtcgc
      241 aatacacgca gcagaacatc gactcgacca agaagggcaa cgcatcgttc ggttgggacc
      301 tgtcgaagaa cgtcccggtg gcgcccgctg cctgatagcc gagagtgggt cgcgtcaagc
      361 gacagacgtt tcacaatctg cttatccgta tcaggagtat tcgcgtcatg ccggcaactt
      421 caaggggttc agtcatgccc ctgttcgacc gtctcgccgc cagcggcgag acccaattcc
      481 cgggcaggaa tgtgctgcgg cattcggtgg cgcgcgatct gggcaggttg ctgaacacgc
      541 gttcgcggct caccttcgag gcgttcggtg cgaccgatgg aagtgtcatc gactacggcg
      601 tgccggactt ctcggaacgt tcgatgcgct cgggtggcga tcgcgacgcc attgctgctg
      661 cgatccggca cgcgattcag ttgttcgaac cgcgtctcac gaatgtcacc gtcagctttg
      721 ctttcccctc cgatcgcgcg cccgacgcca tcctgctgat cggcggccag attcgtgagg
      781 gaacaggcgt ggaccatgtg gccttcgaac tggcaccgtc gggccactac accgcggacc
      841 cgcgatgggt ggaacatggc tgacctggcc cgcgacgata tcctccagta ctacaaacgc
      901 gagctgtcct atctgcgcac gcagggcgcc gatttcgcgc agcgttatcc gaaggttgcg
      961 gcacggctgg cgttgcatgg caccgaatcg ctggatcctc acaccgagcg gctgatcgaa
     1021 gccacggcat ttctcgcggc acgtgtccat cgtgatctcg atcaggaatt tccgcaggtt
     1081 gcttcggcct tgctggacaa cgtttgcccg tcgctcgttc agccgatgcc gtcgatgacc
     1141 gtcgcacagt tcgaactcga tccgagccag ggcaaggtga cggcgggctt caaggtggcg
     1201 cgtcatacgg gtttgcaggc gctcactgag agcggcgacg cctgccggtt ccgcacggcg
     1261 tgggaaacga tgctctggcc gctgaggatc agccgggccg cgttcggcga cgactcgacc
     1321 ttacggctca cgctcgagtg cgaaccgggc gtcgatttct cggaactcga actgaagcaa
     1381 ttgcgcatcc atctgcacgg cgactggatg gtgacaatgc cgctctatga attgctcgcg
     1441 tcgggtgtga ccgatgtatc gctgcggccg gagagtggcg ggggtgtcgt cttgcccgcg
     1501 tcggcatggc gtgaagtggg ttacgcggaa gccgacagcg tgctgccgca accaccgcat
     1561 gcgcagccgg cttatgggct gatgcaggaa tatttcgcct ttccgcgcaa gtttcatttc
     1621 ttcgatctgc atcatctggc gggccgcctc ggcactggcc gcacatgcga aatcgtgctg
     1681 catctggagc gggtgccgcg cggactcggc atgctgggcg cgcaacattt caagcttggc
     1741 tgcaccccga tcgtgaacct gttctcgcag accagcgagc ccatcgcaat cgatcatcgg
     1801 cagtacgaat atcggctggt cgcggaccag cggcgcgacg caatgaccga gatccactcg
     1861 attgtctccg tggtcgcgtc ggacccgtcg atggaacgct cggcgaccgt gccgggattc
     1921 tccgcgatcg acc
//
LOCUS       DATGBK010000379         3107 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_28033, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000379 DATGBK010000000
VERSION     DATGBK010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28033"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..778)
                     /locus_tag="VKJ77_05500"
     CDS             complement(<1..778)
                     /locus_tag="VKJ77_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44763.1"
                     /translation="MKNIPPLTALRCFEAAARLGGVTLAARELNVTHSAVSQQIRILE
                     DTMGIALFVREARGLRLTEEGRLYALEIRSALRDISNATLLAQARPQDSELVIATLPS
                     FALHWLLPRLPSFRDRHPYYRVRLQTSLEIHDMRHGLADVSIRMGQGHWPGLAQKELF
                     SDELLIVAAPHFNGGQLPCSAEEIVACPLIRSTDAPWTDWCRAANVREPDNASGLFAN
                     DSNIVLGAVVLGQGIALERRTLVADAIARGELVQITDIYVP"
     gene            936..1550
                     /locus_tag="VKJ77_05505"
     CDS             936..1550
                     /locus_tag="VKJ77_05505"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HMC44764.1"
                     /translation="MKLIGMLDSPYVRRVAICLKLLELDFEHRPVSVFRDFEEFRKLN
                     PVVKAPTLILDDGQSLMDSTLILDYVTALAGPVGTSTPDRMEDRLRATRLTGLALAAC
                     DKTVQIVYERNLRPIEKQHEPWIDRVSVQLLAAYAELETELALATLPLDAGRLGQAGV
                     TVAVAWRFTQMMVPKIVVAAEYSNLQSFSAFADQQPAFESTPPD"
     gene            complement(1671..2588)
                     /locus_tag="VKJ77_05510"
     CDS             complement(1671..2588)
                     /locus_tag="VKJ77_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007747270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HMC44765.1"
                     /translation="MKIPKTVLWVSHRTTYRYSTYVETAQHLATIRPQSCAWQRVISH
                     TESIEPKPPYINSRVDTFGNDVLYFSLESPHRSLQMVSETTVELTPRWASLDPATTPA
                     WDEVAKGMRFSASAPFRPETEFCFASPNISLGQDLRDYALESFPAGKPLAEGAIDLMH
                     RIHADFKYKPLATSYDTPAHRAFEMRRGVCQDFAQVMIGCMRALGLPARYVSGYLRND
                     PAPGQEKLIGADASHAWVSVFCPGSGWIDLDPTNDVLADLEHVTLATGRDYSDVSLLR
                     GMILGGGSHRIDVGVTVLALDAESGSDAD"
     gene            complement(2585..>3107)
                     /locus_tag="VKJ77_05515"
     CDS             complement(2585..>3107)
                     /locus_tag="VKJ77_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-E domain-containing protein"
                     /protein_id="HMC44766.1"
                     /translation="GDRMTRDEAWKLVFAGRHIERVWTMTTFLRVAAEHGQMTTPAGF
                     DLLLQLFDSTLTYRSLYPGRFEVPALIDLLVVEPTNPRGLYGVYKRLCTKLNEISIAA
                     GNTNYGAFSDATLLLKSLRGLEQLCTTDEEGNYGELIQACEALGDHVSAAAHEISARY
                     FSHANTQALQVSS"
BASE COUNT          638 a          940 c          895 g          634 t
ORIGIN      
        1 atggcacgta tatatcggta atctgaacga gctcgccgcg agcaatggca tctgcaacga
       61 gcgtgcgccg ttcaagcgcg atgccctgcc ctagaaccac ggcacccaat acgatattcg
      121 aatcgttcgc gaaaagccca ctcgcattgt cgggttcgcg cacgttggcc gcgcggcacc
      181 agtcggtcca gggtgcatcg gtgcttctta tcaatggaca cgccacgatc tcctcagctg
      241 agcaaggaag ctgacctccg ttgaaatgcg gtgcagccac gatcagcagt tcgtcgctga
      301 acaactcttt ctgagcgaga ccgggccagt gcccttgtcc cattcgaatg ctgacgtcgg
      361 ccagaccgtg ccgcatatcg tgtatctcaa gactcgtttg caagcggacg cggtaatacg
      421 gatgccgatc ccggaaactc ggtaaccgag gcagcaacca atgcagagca aacgacggca
      481 gcgtcgcgat gaccagttcg ctgtcttgag ggcgggcctg agccagaagc gtcgcgtttg
      541 aaatgtcgcg aagcgccgag cgtatttcga gcgcatagag acgtccctct tccgttagcc
      601 gcaatcctct cgcttcacgc acgaagagcg caatgcccat tgtgtcttcg agaattctga
      661 tctgctgact gaccgccgag tgcgtcacgt tgagttcgcg cgcagcgagc gtgacgccgc
      721 cgagtctggc agcggcttcg aaacatcgga gcgcggttaa aggcgggatg tttttcatgt
      781 aagtttttct tacgaaagac gtttgtttat gtcgcttttc acgcgtcgac taactgttta
      841 acctgatgga aatggtggtc ttatatcctc gatgcaagcg tatccagcgg cgtgcataaa
      901 gacggctgca tgatagatat tctaacggga agcgtatgaa actgatcgga atgctggact
      961 cgccttatgt gcgccgggta gccatttgcc tcaagctgct tgagcttgat ttcgaacatc
     1021 ggccggtgtc ggtattcagg gacttcgagg aattccgcaa gctcaacccg gtcgtgaagg
     1081 ctccgacctt gattctcgac gatggtcaaa gcctgatgga ttccacgctg atcctcgact
     1141 atgtgacggc cctagctggg ccggtcggca cgtcgacacc ggaccgcatg gaggatcgtt
     1201 tgcgcgcaac caggctcacc ggtctcgcgt tggcagcgtg tgacaagacg gttcaaattg
     1261 tctatgaacg caacttgcgt cccatcgaaa aacagcacga accgtggatc gatcgcgtca
     1321 gtgttcagtt gctcgcggcg tacgcggagc tcgaaaccga actggcattg gccaccctgc
     1381 ccctggatgc aggacgactt ggacaggcag gcgtgactgt cgcggtcgct tggcgattca
     1441 cccagatgat ggtgccgaag attgttgtcg cagcggagta ttccaacctg caatcgttct
     1501 cggctttcgc cgaccaacag cctgctttcg aaagcacgcc gcccgattga gcgatggcaa
     1561 aggatagccg ccgtctagtc cacgataacc agcttggcgc cggttgcaga tgacgaccta
     1621 tgcgcctcgg cgttatcggt gactgggtag ctcatgcccg caacgcttgc ctaatcagcg
     1681 tcggagccag actcagcgtc cagcgccagc acggtgaccc ccacatcgat ccgatgtgac
     1741 cctccgccga gaatcatccc gcgcagcagc gacacgtcgc tatagtcgcg ccccgtggca
     1801 agcgtcacat gctccaagtc ggcgagcaca tcgttcgtcg gatcaagatc gatccatccg
     1861 ctgccgggac aaaacaccga cacccacgca tgcgacgcat ccgcgccgat caatttctcc
     1921 tgccccggcg cgggatcatt gcgcaaatat ccgctcacgt accgggccgg caacccgagc
     1981 gcacgcatgc acccgatcat cacctgcgcg aaatcctggc agacgccccg gcgcatttca
     2041 aacgcgcgat gggcgggtgt gtcataggac gttgccaaag gcttgtactt gaagtcggca
     2101 tgaatccggt gcatcaggtc gatcgcccct tccgccagcg gcttgcctgc aggaaaactc
     2161 tccagcgcat agtcccgcag gtcctgcccg agactgatat tgggcgacgc aaagcaaaac
     2221 tctgtctcag ggcgaaacgg cgcactggcg ctaaaacgca tacccttcgc gacctcgtcc
     2281 cacgccggcg tggtcgccgg atcgagcgag gcccatcgcg gcgtcagttc aacggtcgtt
     2341 tcgctgacca tctgcaatga ccggtgcggt gactcgagcg aaaaatacag cacgtcgtta
     2401 ccgaaggtat cgacgcgact gttgatgtac ggcggcttcg gctcaatgct ttcggtatgc
     2461 gaaatcaccc gctgccacgc gcagctttgc ggccggatgg tcgcaagatg ctgagccgtt
     2521 tccacatagg ttgaatagcg gtaggtcgtc cggtgcgaca cccacaacac ggttttcgga
     2581 atcttcacga cgacacctgc aatgcctgcg tattcgcgtg gctgaagtaa cgcgcgctga
     2641 tttcatgcgc agcggcgctc acgtgatcgc cgagtgcctc gcaggcctgg atgagttcgc
     2701 catagttgcc ttcctcgtcg gtcgtgcaga gttgctcgag tcctcgcagc gacttgagca
     2761 acagcgtggc gtcgctgaat gcgccgtagt tcgtattgcc ggccgcaatt gaaatctcgt
     2821 tgagctttgt gcataagcgc ttgtacacgc catacaggcc gcgcgggttg gtcggctcga
     2881 ccaccagcag gtcgatcagc gcgggaacct cgaaacgccc cgggtaaagc gatcgatacg
     2941 tgagcgtgct gtcgaacaat tgcagcagca ggtcgaaccc ggccggcgtc gtcatctggc
     3001 catgctcggc ggccacgcgc aggaaggtgg tcatcgtcca tacgcgttcg atgtgccgtc
     3061 ccgcaaacac cagcttccac gcttcgtcgc gcgtcatgcg gtcgccc
//
LOCUS       DATGBK010000380         2701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_120495, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000380 DATGBK010000000
VERSION     DATGBK010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120495"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..1521)
                     /gene="nusA"
                     /locus_tag="VKJ77_05520"
     CDS             complement(46..1521)
                     /gene="nusA"
                     /locus_tag="VKJ77_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HMC44767.1"
                     /translation="MSREVLMLADALAREKNVNKDVVYAALEAALASATKKLFEEDVD
                     IRVAIDRESGEHETFRRWKVVPDEAGLQEPDQEILLFEAKEEKPDAQIDEYIEQPIPS
                     IEFGRIGAQAAKQVILQKVRDAEREQILNDFLERGEKIMTGAVKRLDKGNFIVESGRV
                     EALLRRDQLIPKENLRVGDRVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEI
                     EQGLLEIKAAARDPGVRAKIGVIAYDKRIDPIGTCVGIRGSRVQAVRNELGGENVDIV
                     LWSEDPAQFVIGALAPAAVQSIVVDEEKHSMDVVVDENELAVAIGRSGQNVRLASELT
                     GWQINIMTPDESALKQNEERGTLRSLFMARLDVDEEVADILIDEGFTSLEEIAYVPLN
                     EMLEIEAFDEDTVHELRNRSRDALLTLAIANEEKVEGVALDLKSLEGMTDELYAKLEE
                     HQIRTRDDLAELAVDELVEMTSIEEDAAKALIMKAREHWFQ"
     gene            complement(1518..1979)
                     /gene="rimP"
                     /locus_tag="VKJ77_05525"
     CDS             complement(1518..1979)
                     /gene="rimP"
                     /locus_tag="VKJ77_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HMC44768.1"
                     /translation="MQLTEIIETTVSGLGYELVDIERAGGGLLRISIDQPAGIAIEDC
                     EKVTRQLQYLFEVENIDYSRLEVGSPGLDRPLKKMADFERFAGSEVTITLKKPLDGRK
                     SYRGILHAPDGESIGLEFEGKDGGAAMLDFTLADLDKARLVPKVDFRSRKQ"
     gene            complement(2386..>2701)
                     /locus_tag="VKJ77_05530"
     CDS             complement(2386..>2701)
                     /locus_tag="VKJ77_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="23S rRNA pseudouridylate synthase B"
                     /protein_id="HMC44769.1"
                     /translation="GARGSNGGREANGNRAGGEANGNRAIPRPGGSAGGPRGSRPPGS
                     PAMGSGNGSGGRSANGGGKRPGQGGRQGPASAGPQGNGGNAGGAGRGGARPAPRNRTR
                     GR"
BASE COUNT          499 a          883 c          726 g          593 t
ORIGIN      
        1 atgcggccta acggccgcga tatgtcagtg cgccatggtc atttctcact ggaaccagtg
       61 ttcacgtgct ttcatgatca acgccttagc ggcatcctct tcaatactgg tcatctcgac
      121 cagttcatcc acagccagct cggcgaggtc gtcgcgcgtc cggatttgat gttcttcgag
      181 cttcgcgtac aactcgtcgg tcataccttc gaggctcttc aggtcgagcg ccacaccctc
      241 gaccttttct tcattcgcta tcgccaacgt cagaagcgca tcacgagagc ggtttcgcaa
      301 ttcgtgaacg gtatcttcgt cgaaggcttc gatttcgagc atttcgttga gcggcacata
      361 cgcgatctct tcgaggctgg taaagccttc gtcgatgaga atgtcggcca cttcttcatc
      421 aacgtcgagt cgcgccatga acaggctacg caatgtgcca cgctcttcgt tctgcttcag
      481 cgcggactcg tccggcgtca tgatattgat ttgccagccg gtcaattcgc tggcaagacg
      541 cacgttctgg ccgctgcggc caatggcaac cgcgagttcg ttctcgtcaa caacgacgtc
      601 catcgaatgt ttctcttcat cgacgacgat cgactgtacg gcagccggcg cgagcgcgcc
      661 gatcacgaac tgagcggggt cctctgacca tagcacgatg tcgacgttct cgccaccgag
      721 ctcatttctc accgcctgga cccgcgaacc gcgaatcccg acgcaggtac caatagggtc
      781 gatgcgcttg tcgtaagcaa tcaccccaat tttcgcacgc acgccaggat cgcgcgcggc
      841 cgccttgatt tcgagcaggc cctgctcaat ttctggcact tccatttcaa acagcttcat
      901 caggaactcg ggcgccgtgc gcgagagttc gatctgcggg ccacgtgccg tacggtcaac
      961 cttcgcaatg taggcgcgaa cccggtcgcc gacccgcagg ttttccttcg gaatcaactg
     1021 gtcgcggcgc aacagcgctt ccacacgacc cgattcaacg atgaaattac ccttgtccag
     1081 acgctttacc gcgccggtca tgatcttttc gccgcgttcc aggaagtcgt tcaggatctg
     1141 ctcgcgctca gcgtcgcgaa ccttctgaag aatgacctgc ttcgcagcct gcgcaccaat
     1201 ccggccgaac tcgatggacg gaatgggttg ctcgatgtat tcatcgattt gcgcgtcggg
     1261 cttctcttcc ttcgcctcga acagcaggat ttcctggtcg ggttcctgca ggccggcttc
     1321 gtccggcacc actttccagc gacggaaggt ttcgtgctcg ccgctttcac ggtcgattgc
     1381 cacgcggata tccacgtctt cctcgaacag cttcttcgtt gccgaagcaa gcgctgcttc
     1441 gagcgctgcg tacaccacgt ccttgttgac gttcttctcg cgcgccagcg catccgccag
     1501 catcaaaact tcgcgactca ttgtttgcgg ctcctaaagt caactttggg gacgagacgt
     1561 gctttatcga ggtctgcgag cgtgaaatcg agcatcgcag cgccgccgtc cttcccttcg
     1621 aattccaaac cgatcgactc gccgtctggg gcatgcagga tgccacggta cgacttgcgc
     1681 ccgtccagcg gcttcttcaa tgtgatagtg acttcgctgc cagcgaagcg ttcgaaatcc
     1741 gccattttct tgagcggacg atcgagaccc ggcgacccga cttcgagccg tgagtaatcg
     1801 atattctcca cttcgaacag atactgaagc tgacgtgtga ctttctcaca gtcttcgatc
     1861 gcgatgccgg cgggctggtc gatggagata cgcagcaaac cgccccccgc gcgctcgata
     1921 tcgacaagtt cgtagcccag gcccgagacc gtggtttcga tgatttccgt cagttgcaca
     1981 gtgaaagact ccaagatgtt cgcgcgctcc acgccgaaca cctgcggacc gcgccttgag
     2041 ctggcgcact ttcgttgccc caagatgctg aaccgaacgg ccaaaaaaaa atgggcgcaa
     2101 cgcccatcct tctgtgccga gatcacatcc gggcggcgaa acaaacacca tgcccagcga
     2161 cttcgtgatt ttagccattt ttcgggataa acgcaaccaa tgcgccctgt atgtagccat
     2221 ttgagggcca tttacaaggc aaatcgaagg cattcatccc gtttttgtcg ggctttcccc
     2281 gcggctaaag tcatcgtgct gaatttcacg ggcaagtgac taagcgagcg atccgattgt
     2341 ccgcatgccc accactcggt ccgagtcgcg tgtcgcgacc aacccttagc gtccgcgcgt
     2401 ccggttgcgc ggtgccgggc gagcgccgcc gcggccagcg ccgcccgcgt tcccgccatt
     2461 accttgcgga ccggcgctgg ccggaccttg acggccgccc tgcccggggc gcttgccgcc
     2521 gccgtttgcc gagcgtccac ctgagccatt gccgctgccc atggcaggcg aaccaggcgg
     2581 acggctgcca cgcgggccgc cagcagagcc gcctggacgc gggatcgcgc ggttgccgtt
     2641 cgcttcgccg cccgcacgat tgccgtttgc ttcccggccg ccattgctgc cacgcgcacc
     2701 a
//
LOCUS       DATGBK010000381         2344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_282238, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000381 DATGBK010000000
VERSION     DATGBK010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282238"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..905
                     /locus_tag="VKJ77_05535"
     CDS             <1..905
                     /locus_tag="VKJ77_05535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC44770.1"
                     /translation="MVLGIEVVLPDGTVVTSLNKMLKNNAGYDLKHLFIGSEGTLGII
                     TRIVLRLSPKPGCTMAALCALGSYDKVVALLNAARRGLGPLLSAFEVMWPDYWRTVTQ
                     QVPGVSSPLSGEHACYVLVEAQGMDEAFDVPRFDAWLERQMEEGILADAAVAQSMADV
                     QAFWGVRDACAEFPQVLGTHEAFDIGLPVAVMDQYVSACLAALKDKYANAVALFYGHI
                     GDGNLHIVACVPGAPIQPKEEIAAIVYTLVQQFGGTISAEHGIGISKKPWLSYARSEP
                     ELALMRRVKNALDPRNLLNPGKVI"
     gene            987..2330
                     /locus_tag="VKJ77_05540"
     CDS             987..2330
                     /locus_tag="VKJ77_05540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013959599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44771.1"
                     /translation="MLKNQQADVRTEEGLLESAISRAKWRIVPFLILMYMLAYLDRAN
                     IGFAKQAYQVSTGVSNAAFAFGAGIFFIAYALFEVPSNLIMHRVGARTWLARIMVTWG
                     LISAAMIYAKSDFLFSFIRFFLGAAEAGLFPGAVLYMTYWFPARARGQILGIFYFGSP
                     LALMLGGPLSGLLLEHEGLFGLHGWQLMFLVEGLLASAVGVWAYFYLCNRPEDAKWMR
                     PDEAQALARALAAEERVKQASGKTSFRAALADPRLIHFALLYFSIQIAGYGVAFYLPT
                     QVSALLQMKIGLHVGLISAIPWACAIVAGAFYPGFAVRTGRRRSFAVLSALAIAGGLV
                     VSAHTSPVIAIVALSFVTIGIMTIQPIFWTFPTAYLGGTAAAGGFAVINAVGNLGGFF
                     APTVKTAVETSFHSPAAGLYVLAASGLTAALLIIALRPQQGERTSVDSRTVQAEV"
BASE COUNT          412 a          669 c          754 g          509 t
ORIGIN      
        1 agatggtctt ggggatcgaa gtcgtgctgc ccgatgggac cgtagtgacc agcttgaaca
       61 agatgttgaa gaacaacgcc ggctacgacc tgaagcatct tttcatcggt agtgaaggca
      121 cgctcgggat catcacgcgt attgtcctgc gcctgtcgcc aaagcctgga tgcaccatgg
      181 cggcgctgtg cgcgctcgga agttacgaca aggtggtggc gttgctgaat gcggcgcggc
      241 gtggtcttgg accactgctg tctgcattcg aagtgatgtg gcctgactac tggcgcacag
      301 tcacgcagca agtgcccggc gtgagcagtc cattgtctgg cgaacacgcg tgttacgtgc
      361 tggtcgaagc ccaggggatg gatgaagcgt tcgatgtgcc gcgtttcgat gcatggcttg
      421 agcgccagat ggaagagggg atcctggccg acgcggcggt tgcgcaatcg atggccgacg
      481 tccaggcgtt ttggggcgtg cgcgatgcct gcgccgaatt tccgcaggta cttgggacgc
      541 acgaggcatt tgacatcggc ctgccggtcg ccgtgatgga ccagtacgtg agcgcctgcc
      601 tcgcggcgct caaggacaag tatgcaaacg cggtggcgct tttctatggc cacattggtg
      661 acggcaacct gcacatcgtt gcctgtgtac ccggtgcgcc aatccagccg aaagaggaga
      721 tcgccgccat cgtgtacacg cttgtgcaac agttcggcgg aacgatttcg gccgaacatg
      781 gcatcggcat ctccaagaag ccgtggctgt cttatgcgcg cagcgaaccc gaactcgccc
      841 tgatgcgtcg cgtgaaaaac gcacttgatc cgcgcaacct gctcaacccg ggcaaggtga
      901 tctgacggtt taactcaagc accagcgatc accggcaaca gaccggggac gctccatccc
      961 gatgtgggga agacaaagga gacgagatgt tgaagaacca acaggccgac gtgcgcacgg
     1021 aagagggttt gctggaaagc gcgatcagcc gcgcgaagtg gcggatcgtg ccgtttctca
     1081 tcctgatgta catgctggct taccttgacc gcgcgaacat cggctttgcg aagcaggctt
     1141 accaggtatc gacgggggtg agtaacgcgg cattcgcgtt cggcgccggc attttcttta
     1201 tcgcgtacgc gctcttcgag gtgccgagca acctgatcat gcatcgcgtg ggcgcgcgga
     1261 catggctcgc ccgtatcatg gtcacgtggg gcctgatttc ggccgccatg atctatgcga
     1321 aaagtgattt tctattctcc ttcatccgtt tctttctcgg cgcagccgag gccggattgt
     1381 tcccaggcgc ggtcctttac atgacgtact ggtttcccgc acgcgcgcgc gggcagatcc
     1441 tcggcatctt ttatttcgga tcgccactcg cgctgatgct gggtggcccg ctctcggggt
     1501 tgcttctgga gcatgagggc ctgttcggcc tgcatggctg gcaactcatg ttcctcgtcg
     1561 agggattgct tgcgtccgcg gtcggtgtat gggcctattt ctatctgtgc aatcgtccgg
     1621 aagacgcgaa atggatgcga cccgacgaag cgcaagccct tgctcgcgcg cttgcggcag
     1681 aggagcgcgt aaaacaggca tccggcaaga cgagctttcg ggccgcgctg gccgacccgc
     1741 ggctcattca tttcgcgctc ttgtacttct cgatccagat agcgggctat ggggtggctt
     1801 tctatctgcc gacgcaggtg agtgcgttgc tgcaaatgaa gataggcctg cacgtcgggc
     1861 tgatatcagc aattccgtgg gcctgcgcca ttgtggccgg cgctttttat ccggggtttg
     1921 ccgtgcgcac cggacgccgt cgcagcttcg cggtgctctc ggcgcttgcg attgccggcg
     1981 gtctggtggt gtccgcacac acgagtcctg tgatagcaat cgtggcgttg tccttcgtga
     2041 cgatcgggat catgaccata cagccgatct tctggacgtt tccgactgct tatctgggtg
     2101 gcaccgcggc ggcgggggga ttcgccgtga tcaatgcagt cggcaatctc ggcggattct
     2161 tcgcgccgac cgtgaaaacc gcggtggaaa cgtcgttcca ctcgcccgcg gccgggcttt
     2221 acgtgctcgc ggcgagcggt ctcacggcgg cgcttctcat cattgcgttg cgcccgcagc
     2281 agggcgaacg cacgtcggta gattcgcgga cagtccaggc tgaggtatag cttctcctgt
     2341 ccga
//
LOCUS       DATGBK010000382         1588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_282254, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000382 DATGBK010000000
VERSION     DATGBK010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282254"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            616..1575
                     /locus_tag="VKJ77_05545"
     CDS             616..1575
                     /locus_tag="VKJ77_05545"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HMC44772.1"
                     /translation="MLATLPEQSVDCVMTSPPYWGKREYAQGGIGLESDHRDFVTHLA
                     EVFVQVKRVLKREGSFWLNIGDSYQHKGLVGIPWRVAFALTDQQGWILRNSVIWNKVK
                     SGMDNSKDRLGNVHEHVFHFVQRAKGYYYDANAIRTKARQARVVKGAVISATGVSGVR
                     YKRQIELSTELAAQEKQAALHALNALLAQICAGRLADFRMIIRGQQRTTHSNSEKLSG
                     RAQELRDRGFYFLRYHPRGSKPNDVWNILPEDTQKRAAHFAAYPLDLCLIPILATCPA
                     GGIVLDPFCGTGTTLVAARSLGRASVGVDLSSSYLELCAQRCR"
BASE COUNT          307 a          497 c          484 g          300 t
ORIGIN      
        1 agagcgtccg cgcgaacgcc cgacggttgc tgactcggct gcggcgagac tgcgcccgtg
       61 ctgctccaat cgctcgacgc tgaagagctc ttcgcgcagg agctcttcgc tgttccatgg
      121 cggtgccctt gacggcccgc cgaatgcccg aaacatgagt tctttcaatt aggcctacgc
      181 aaaaaccagg ctgcggatct cgcccagtca ttccagggga cgaattccag cgcctggaat
      241 gtcaaggagg gtggcgagag tcgatgcatg acaagcttat cgcggttact gcgtttgcgt
      301 aagctctgct agagccgggc gcaggtgctc gtgcgcaatt gccgaggcag tgcccgcgct
      361 cagcgcagcc acgcaaacgc gcgcgcaaat cagctttggt tgtctttccc gcccggatgg
      421 ctaccatcag ccgctgacga gtggcgaggg tctttaatgg acgagacgcc cgcaagcctt
      481 tgcaaaccgc ccgcgccgtt gctgactccc gcggcgcgcg ccgcgttccg aaactcttcg
      541 taccacgcag ccttcaatga gcatgcgcgc tcgggaactt tggcgccgtt actgctcgcg
      601 ggcgatgcgc gcgccgtgct tgcaaccttg cctgaacagt cggtcgattg cgtcatgacg
      661 tcaccgccgt attggggcaa gcgcgaatac gcgcaaggcg gcattggcct ggagagcgac
      721 catcgcgatt tcgtcacgca tcttgcagag gtctttgtgc aagtgaagcg cgtgctgaag
      781 cgcgaggggt ccttctggct caacatcggc gacagctacc agcacaaggg cctcgtcggc
      841 ataccgtggc gtgtggcgtt tgccctaacc gatcagcagg gatggatcct gcgcaacagt
      901 gtgatctgga acaaggtcaa gagcggcatg gacaacagca aggatcggct cggcaacgtc
      961 cacgaacatg tgtttcactt cgtgcagcgg gcgaaaggct attactacga cgcgaacgcg
     1021 atacgcacca aggcgcggca agcgcgcgtc gtgaagggtg ccgtcatctc ggcgaccggc
     1081 gtttccggcg taagatacaa acgccaaatc gagctctcca ccgaactcgc agcgcaagaa
     1141 aagcaggcgg cactgcacgc cctcaacgcg ctgcttgcgc agatctgcgc cgggcggctg
     1201 gccgatttcc gcatgatcat ccgcggtcag cagcgcacca ctcactccaa cagtgaaaag
     1261 ttatccgggc gtgcgcagga gctgcgcgac cgaggcttct attttctgcg ttaccatccg
     1321 cgcggcagca agcctaacga tgtgtggaat atccttcccg aagatacgca gaagcgtgcg
     1381 gcgcatttcg ccgcctatcc gctcgacctg tgcctcatcc cgatactcgc aacctgcccc
     1441 gctggcggca tcgtgcttga cccgttctgc ggcaccggca ccaccttggt ggcggcgaga
     1501 agcctcggcc gcgcgtcggt aggcgttgac ctttcaagca gctatttgga attgtgcgca
     1561 cagcgttgcc gttgacgcta agaagtgc
//
LOCUS       DATGBK010000383         1645 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_328545, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000383 DATGBK010000000
VERSION     DATGBK010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328545"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VKJ77_05550"
     CDS             <1..471
                     /locus_tag="VKJ77_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004531729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HMC44773.1"
                     /translation="SQWMDSRVARLETRKYDWDALKFQADYDPKYRRAQMRYVGTGGT
                     GVAKDVNTVPAGGFTFSTMVIPAGNIGPSHIHMDVEEIFFVIRGKMKVVCEKDGESWE
                     TVVGERDLISVPPGVYRTEINIGDEDALMCVMLGAAKPITPTYPPDSPLARLKR"
     gene            476..1366
                     /locus_tag="VKJ77_05555"
     CDS             476..1366
                     /locus_tag="VKJ77_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011354715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC44774.1"
                     /translation="MTSPAFTLMPTVTHADALVRFPEQRVDTAQRTIGYRKAGDTHLR
                     TMPIVMLHGIGSGSASWVRQMETLGAAHQVLVWDAPGYGQSSHVEPASPVASDYADAL
                     SDWLDALGIERCVLVGHSLGAIMAASFASRQAARVAGLLLLSPAGGYGAAPAHVREEK
                     RDARLAMLAELGPQGLAEKRSANMVSAEADDEAREWVRWNMARINPAGYTQATHLLAN
                     ADLASDLTDFDGRVAVAVGAEDTITPPAACELIAKATNVSLQVIPGAGHAGYIEAPAR
                     YSALIEAFSAQCKQSKGVMQ"
     gene            1363..>1645
                     /locus_tag="VKJ77_05560"
     CDS             1363..>1645
                     /locus_tag="VKJ77_05560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC44775.1"
                     /translation="MTLGTLARTADDTDKDDGNYIVPGLERGLKILAEFSPREPVLGA
                     PELSKRLKIPRTTVFRLLQTLESLGFLERADKDRNYRLGVAVLRLGFEYL"
BASE COUNT          316 a          476 c          549 g          304 t
ORIGIN      
        1 tcacaatgga tggactcgcg cgtcgcgcgt cttgaaacgc gcaagtacga ctgggacgcc
       61 ttgaagttcc aggcggatta cgatccgaag tatcgccggg cgcagatgcg ttatgtcggt
      121 acgggtggca cgggcgtagc gaaggacgtg aacacggttc cggccggcgg cttcacgttc
      181 tcgaccatgg tcattccggc gggcaacatc ggtccgagcc atattcatat ggatgtcgaa
      241 gaaattttct tcgtgattcg cggcaagatg aaagtggtgt gcgagaagga cggcgagtcg
      301 tgggaaacgg ttgtcggtga gcgtgacctg atctcggtgc cgccgggcgt gtaccgcacg
      361 gaaatcaata ttggcgatga agacgcgctc atgtgcgtga tgctcggcgc ggccaagccg
      421 atcacgccga cgtatccgcc cgattccccg ctggcccggc ttaagcgcta agcccatgac
      481 atcgcccgct ttcacgctta tgcctacggt cactcacgct gacgcgctcg ttcgtttccc
      541 cgagcaacgc gtggataccg cgcaacgcac gatcggttat cgcaaggcag gggacacgca
      601 cctgcgcacc atgcccatcg tcatgctgca tggtattggc tcgggctcgg cgtcctgggt
      661 gcgccagatg gagacgctgg gggccgcaca tcaagtgctt gtgtgggacg cgccggggta
      721 tggacagtcg agtcacgttg agcctgcatc accagtggca tcggactatg cagacgcgtt
      781 gagcgactgg ctcgatgcac tcgggatcga acgctgcgtc ctcgtgggcc attcgcttgg
      841 cgcgatcatg gcggcttcgt tcgcgagccg tcaggcggcg cgggtagcgg gactgctgct
      901 gttgtcgccg gcgggaggat acggcgcggc accggcgcac gtgcgtgaag agaagcgtga
      961 cgcgcgcctc gcgatgctcg ctgaactcgg gccgcagggc ttggctgaaa agcgcagcgc
     1021 gaacatggtg tcggccgagg cggacgatga agcgcgagag tgggtgcgat ggaacatggc
     1081 gcggatcaac ccggccggct acacgcaggc gacacatctt ctcgccaacg cagatctggc
     1141 gtctgacctg acggacttcg acggccgcgt agcggtcgcg gtcggcgccg aagacacgat
     1201 cacgccgccc gctgcctgcg aactgatagc gaaagccacc aatgtcagcc tgcaagtgat
     1261 tcccggcgcg ggtcatgcgg gttacatcga agcgccggcg cgctacagcg ccttgatcga
     1321 ggcgttcagc gcacagtgca agcagagtaa gggagtcatg caatgacact cggaaccctc
     1381 gccagaacgg ctgacgacac tgacaaggac gatggcaatt acatcgtgcc gggactcgag
     1441 cgcggcttga agatcctggc tgaattctcg ccgcgcgagc cggtgctcgg tgcgccggaa
     1501 ttatcgaaac gcctgaagat tccgcgcaca accgtgtttc gtctattgca gacgcttgaa
     1561 tcgctcggct tcctggaacg ggcggacaag gatcgcaatt acagactggg cgttgccgta
     1621 ttgcggctcg gttttgagta tctca
//
LOCUS       DATGBK010000384         2997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_120514, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000384 DATGBK010000000
VERSION     DATGBK010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2997
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120514"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1264)
                     /locus_tag="VKJ77_05565"
     CDS             complement(<1..1264)
                     /locus_tag="VKJ77_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44776.1"
                     /translation="MSVITAQPAKAVSQSKIVVAAIIGNLLEFYDFTVYSFFALTIAK
                     LFFPAHDPVVSTLLALSAFAIGFVARPVGGFVLGHYADKRGRRAALTLTIFLMAIGSA
                     MIGLAPSYASIGLAAPALIIFARLLQGFAQGGEFGAATATLLETGSAKGRGFRASWQL
                     ASQGAAALMGSGIAALLTYQLSSEQLLDWGWRVPFLIGTLIMPVGVYLRRHIVEEPPK
                     LAKAAGSSLEPGLVRKWFLTVFAIMGMTVATYVLMYYIPTYSIQYLKMPPKLSMLVSI
                     FAAIVSLTLCPVWGSLSDKMQRRKPLILVGRIVLIVLLYPAFWLMNQFPSLPVMVGLI
                     VLLMLFYTMGSAPAYALMPENFPKHVRAGYLASAYAVAVSVFGGSAQLVVAWLIKVTG
                     NTMAPAWYMIVCVIISLIAVSMLDETGGR"
     gene            complement(1390..2574)
                     /locus_tag="VKJ77_05570"
     CDS             complement(1390..2574)
                     /locus_tag="VKJ77_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20 aminoacylase family protein"
                     /protein_id="HMC44777.1"
                     /translation="MENTKGFCSLDDTMDLRDELSDIRHRLHQNPELAYKEFQTSDLV
                     AQSLESWGYKVTRGLGGTGMVASLTAGSGTRSVAVRADMDALPIAEETGLPYASRNAG
                     LMHACGHDGHTTMVLGAARHLARTRAFNGTVHLVFQPAEEIGADSGAMRMIADGLFER
                     FPCEAIFGLHNHPGYPTGTFMFRSGPFMAASDTVNITIHGRGGHAARPHLAVDPVVIG
                     AGLVTALQTVVARSIDPMQTAVVTVGAFNAGHAANVIPESARLQISVRSFDPAVRKLL
                     EARIRALTDAQASAYGARVEIEYVPGYPVVVNSQAETELALQVARELVGDDRVVDNFG
                     PIAGSEDFAYYLQKKPGCFLRLGNGEGAPMLHNASYDFNDDNLTVGAAYWTRLVERFL
                     AQ"
     gene            2690..>2997
                     /locus_tag="VKJ77_05575"
     CDS             2690..>2997
                     /locus_tag="VKJ77_05575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44778.1"
                     /translation="MAKDNTPARENLLSARSLRYLHEIDLHGGVRAAADALAINGSVI
                     SRQVAQLERDHGVVLLERRGRRAVLTEIGLSLVEHFRESCRRDADMLAQLEDFRSLRR
                     G"
BASE COUNT          662 a          902 c          897 g          536 t
ORIGIN      
        1 cacgtccgcc ggtttcatcg agcatcgaaa cggcgatcag cgaaatgatc acgcacacga
       61 tcatgtacca agcgggggcc atcgtattgc cagtcacctt gataagccac gcgacaacca
      121 gctgcgccga gccaccaaac accgacactg ccaccgcata cgcactcgcg agataacccg
      181 cgcgcacatg ctttggaaag ttctccggca taagtgcata agccggtgcc gaacccattg
      241 tgtagaacag catcagcagt acgatcaatc caaccatgac cggcaacgaa ggaaactggt
      301 tcatcaacca gaacgccgga taaagcagca cgatcagcac aatgcgtccc accaggatca
      361 gcggcttgcg gcgttgcatc ttgtcggata gcgaacccca gaccggacaa agcgtcaacg
      421 aaacgatcgc cgcgaagatc gacaccagca tggaaagctt gggcggcatc ttaaggtact
      481 ggatcgaata ggtcgggatg taatacatga ggacgtaggt tgccaccgtc atgcccatga
      541 ttgcgaatac agtcaggaac cacttgcgca cgaggcccgg ctccagactc gacccggctg
      601 ccttggccag cttcggcggc tcttccacaa tgtgccggcg caaatacaca ccgactggca
      661 tgatcagcgt gccgatcagg aacggcacgc gccatcccca gtcgagcagc tgctcgctgc
      721 ttaactggta agtcagcagt gcagcaatcc ccgagcccat cagcgcagca gcaccttgac
      781 tcgcaagctg ccagctagcc cgaaagccac ggcctttagc cgaaccggtc tcaagcagcg
      841 tcgccgtggc ggcgccgaat tcgccgcctt gcgcgaagcc ctgcagcagt cgcgcaaaga
      901 tgatgagcgc cggagcggcg aggccaatgc ttgcatagct cggcgccagg ccgatcatgg
      961 ccgagccaat cgccatcagg aaaatggtca gggtcagcgc agcacgccgg ccgcgtttgt
     1021 ccgcgtagtg acccagcacg aaaccgccga ccgggcgcgc gacaaagccg atcgcaaacg
     1081 cagacagcgc gagcaacgtg gagacaaccg ggtcatgcgc cgggaagaaa agcttggcga
     1141 tcgtgagcgc gaaaaagcta tagacggtga agtcgtaaaa ctcgagcagg ttaccgatga
     1201 tcgcggcaac cacgatcttg ctttgcgata ccgctttagc aggctgggct gtaatgactg
     1261 acatggaagt cccgtgaatg cttgggtctt gcgcacggct aagcgcgatg ccgaggcatc
     1321 gcacagtgcg caagctttat ttgctaccga tattgctact gaagtactac cgattcaccc
     1381 gcgtgaagcc tactgcgcga ggaaacgctc gaccagacga gtccagtacg ccgcgccgac
     1441 ggtgaggttg tcgtcgttga agtcgtagga cgcgttatgc agcatcggcg cgccttcgcc
     1501 gttgcccaag cgcaggaaac atcccggctt cttctgcagg tagtaggcga aatcttcact
     1561 gcctgcgatc ggaccgaagt tgtcgacaac ccggtcgtcg ccaaccagtt cgcgcgccac
     1621 ttgcaatgcc agttccgtct cggcctggct gttgaccacg accggataac ccgggacgta
     1681 ctcaatctca acgcgtgcgc catacgcgct tgcctgagcg tccgtcagcg cgcggatgcg
     1741 tgcttcgagc agcttgcgca cagcggggtc gaacgaacga acactgatct gcaaacgcgc
     1801 cgactcagga attacgttgg cggcatgacc ggcgttgaaa gcgccgaccg tgaccacggc
     1861 tgtttgcatc gggtcgatac tgcgcgcgac caccgtttgc aaggccgtca ccagccccgc
     1921 gccgattacc accgggtcca cggcaagatg cgggcgcgct gcgtggccgc cacggccgtg
     1981 aatggtgatg ttgaccgtat ccgatgccgc catgaaaggg ccgctgcgga acatgaacgt
     2041 gcctgtcgga tagccgggat gattgtgcaa gccgaagatt gcctcgcaag ggaagcgctc
     2101 gaacaagccg tcggcaatca ttcgcatggc gccgctgtcc gcgccgatct cttcggccgg
     2161 ctggaacacg agatgaaccg tgccgttgaa tgcgcgagtg cgcgcgaggt ggcgcgcggc
     2221 gcccaggacc atggtggtgt ggccgtcgtg gccgcacgcg tgcatcaggc ccgcgttgcg
     2281 gctggcgtac ggcaaaccgg tttcctcggc aatcggcaac gcgtccatgt cggcgcgcac
     2341 ggccacggag cgggttcctg atccggctgt gagtgacgcg accatgccgg ttccgcctaa
     2401 gccgcgcgtc actttgtaac cccagctttc caggctttgc gcaacgaggt cggaggtttg
     2461 aaactccttg tacgcaagct caggattctg atgcaggcga tggcggatat cgcttagttc
     2521 atcgcgcaga tccatcgtgt cgtctagtga gcaaaagccc ttggtatttt ccatggtcgt
     2581 gggtgtctct ctgtaagaaa tctaatgggg gagtattctg ctgcaaaatc cgctaatcaa
     2641 tgacgttcat tgaccgataa tgttgacctg catgtcaaca gataacgata tggctaaaga
     2701 caatacgcct gcccgcgaga atttgcttag cgcccggagc ctgcgctatt tgcatgaaat
     2761 cgacttgcac ggcggagtac gtgctgcggc cgacgcgcta gcaattaacg gctcggtgat
     2821 cagccggcaa gtggcacaac tcgaacgcga ccacggcgta gtgctgctgg agcggcgcgg
     2881 cagacgcgcg gtgctgaccg agatcgggct aagtcttgtc gaacattttc gcgagagctg
     2941 ccgccgcgat gcggacatgc tggcacaact ggaagatttc aggagcctga ggcgcgg
//
LOCUS       DATGBK010000385         2557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_74109, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000385 DATGBK010000000
VERSION     DATGBK010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2557
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74109"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..176)
                     /locus_tag="VKJ77_05580"
     CDS             complement(<1..176)
                     /locus_tag="VKJ77_05580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC44779.1"
                     /translation="MKVITVVSAKGGVGKTTLAANLASVLAARGRRVIALDLDPQNAL
                     RLHFGIPLDSIDGLS"
     gene            complement(173..1060)
                     /gene="bcsP"
                     /locus_tag="VKJ77_05585"
     CDS             complement(173..1060)
                     /gene="bcsP"
                     /locus_tag="VKJ77_05585"
                     /inference="COORDINATES: protein motif:HMM:NF040718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsP"
                     /protein_id="HMC44780.1"
                     /translation="MNPSRDIEKLFDKFGGDAGNYQEIGRENEAVHARTRWPLLATLD
                     LSQPSIPNIAPRRDAHLPQTQDRSGEHRNVPNSLTQPSGAAPVNRGKPPLFARAHRKT
                     IPPVANVTLPATPVGAARFSALIDAVEETSNTVETEAVPAAAVQPQQPARLPQPLFRP
                     FHTQQEQRLPHAQQPEPRTQPLATPAPVSVPAQPTGFAAALQRSNTAAKPLSLPRVQA
                     PETAQAPAPAAASEPKNPSILGKLFRPQVQAQPAPQPSAPPDSLESMFQRLRGPVAPA
                     PAPVNSGAGSWLAKHNSSS"
     gene            complement(1305..1760)
                     /gene="bcsD"
                     /locus_tag="VKJ77_05590"
     CDS             complement(1305..1760)
                     /gene="bcsD"
                     /locus_tag="VKJ77_05590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030244 - cellulose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsD"
                     /protein_id="HMC44781.1"
                     /translation="MAMTLDYLLDRQISSQWRGVLVALAEEFDTQIGRDELRQLMQRV
                     GRRFAAAHPLPPCATTPELGAALIAIWNDVDWGFVEVGDEPDYLRIVHCCPPLLAFGA
                     NALPWSPAFLEGAYQEWLSALGAQGLSVVQAGEFDESASVEFRLGRYSN"
BASE COUNT          472 a          723 c          819 g          543 t
ORIGIN      
        1 gacagtccgt cgatgctgtc gagcggaatg ccgaaatgca ggcgcagtgc gttttgcgga
       61 tcgaggtcga gcgcgatcac gcgtcgcccg cgtgcagcga gcaccgaggc caggttcgcc
      121 gcgagggtgg ttttaccgac accgcccttg gcggagacga cggtgatgac tttcatgacg
      181 atgagttgtg cttggcgagc cacgaacccg cgcccgagtt gacaggggcc ggcgccggcg
      241 cgacaggtcc gcgtagacgc tggaacatcg actccagtga atccggcggc gcgctcggtt
      301 gcggcgcagg ctgagcctgc acttgcggac ggaacagctt accgaggatc gacgggtttt
      361 ttggttcaga tgcggctgct ggtgcaggtg cttgtgccgt ttcgggggcc tgcacgcgtg
      421 gcaacgacag cggctttgcc gcagtgttcg agcgttgcag cgccgccgcg aaacccgtcg
      481 gttgggctgg cacgctcaca ggcgcaggcg tggcgagcgg ttgcgtgcgc ggttctggtt
      541 gttgagcgtg cggcaggcgt tgctcctgtt gcgtgtggaa cggccgaaac agcggctgcg
      601 gcagtcgtgc tggctgctgc ggttgcacgg cggctgcggg cactgcctcg gtttccacgg
      661 tgttcgacgt ttcttcaacc gcatcgatca gtgccgagaa gcgtgctgcg ccgaccggcg
      721 tggccggcaa tgtcacattg gcgaccggcg gaatcgtctt gcggtgcgcg cgtgcaaaga
      781 gcggcggttt gccgcgattg accggcgctg cgcccgacgg ctgcgtcagg ctgttcggca
      841 cgttgcgatg ttcaccggag cgatcttgcg tctggggcag gtgagcatcg cggcgaggcg
      901 cgatgttcgg gatcgacggc tgcgagaggt cgagggtcgc gagcaacggc cagcgcgtgc
      961 gggcgtggac ggcttcgttt tcgcggccga tctcctggta gttgccggca tcgccgccaa
     1021 atttgtcgaa cagcttctca atatcgcgcg aagggttcat gtgctgcgtc ctcgtactct
     1081 cggttgtact ttgggccttg cctcgacgac cactggccag tgacgtctcg cgcgctgttg
     1141 ggcgctgatg cgggcaatgc ctgattgact gcctggtcga ctgcctgatc cggtgtcgga
     1201 ctcgtactgc attcgtaaaa gtaagggagt ttccggtcca gcttcacggt cgggcttcag
     1261 actcgcccag ccaagcgagg ttggacgtgc cctcaagttg ccccttagtt gctataacgg
     1321 cccagtctga attcgactga agcgctttcg tcaaactcgc cagcttgcac caccgacaag
     1381 ccttgtgcgc cgagcgcact taaccactcc tggtacgcgc cttcgagaaa cgccgggctc
     1441 cagggaagcg cgttcgcgcc gaacgcgagc aacggcggac agcaatgaac gatgcgcaga
     1501 taatccggct cgtcacccac ctcgacaaac ccccagtcga cgtcattcca gattgcgatc
     1561 aacgcagcgc cgagttcggg cgtggtggcg cagggcggca gcggatgggc ggcggcaaaa
     1621 cggcgtccta cccgttgcat caactgtcgt agctcgtcgc ggccgatctg ggtatcgaat
     1681 tcttccgcca gggcgacgag cacgccacgc cactgcgagg aaatttgccg gtccagcagg
     1741 tagtcgaggg tcatggccat attgtttgaa aggaaagctt ccggcttgat aaacgcgaaa
     1801 atagcgatac ggcgtaacca gtagtattta cactgtgccg tcgtgcgatg gacggtaata
     1861 ctgatacggc ttacctgtaa gcccggagtc tacttcaagg cgatttgttt ttgccacata
     1921 acgcacctta gcaaatagtt ctgtggttta agccgcaaac agagggcaaa aaattcgtta
     1981 tgtctagttt atgtagtagc cggacaatta gcgcaaacgt ttaatcacgc aattcattcg
     2041 tcagtttaat cttgcgccgc gcgcttgtgt cgtgaagttg gcgggagtcg aactgcacgt
     2101 tgatattgca taagctgcag ctaacgaagt ccgagcgaat tccgagctcg ccagcgcgtt
     2161 ttttgcacgc cgcgcgatta tcggatgcgc tagacactcg ctgcgtttca ttccctggcg
     2221 aatccgcaga tttgcagagg gggcgatatc agccaatctg tttccagcgt ggcgggaaaa
     2281 tacaggtcgc gtacccgggg taactcgcac gcttctcagg aatacgatct tcaccgcgcg
     2341 attctcagtg agcaattctt gccgtatcgc cacgtaactg atctgatccg acggcacgtg
     2401 attcgacacc gcggcaggtt cgcctgctaa atcaatgcaa ctgacccttg gatgccaaac
     2461 gcgtttttgg gcggcaggga aggatgatta cccgttgatc ggactccgcc ggcgttgtga
     2521 gctagcacct ttcgcaacca cgggggttac atcgtca
//
LOCUS       DATGBK010000386         1832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_28122, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000386 DATGBK010000000
VERSION     DATGBK010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28122"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VKJ77_05595"
     CDS             complement(<1..185)
                     /locus_tag="VKJ77_05595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014895733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 family protein"
                     /protein_id="HMC44782.1"
                     /translation="MNEREVADYLIANPDFFAEHAELLGAIRLSNPHGKSAVSLQERQ
                     MQMLRDKNKQIERRLAEL"
     gene            complement(215..1099)
                     /gene="dapF"
                     /locus_tag="VKJ77_05600"
     CDS             complement(215..1099)
                     /gene="dapF"
                     /locus_tag="VKJ77_05600"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HMC44783.1"
                     /translation="MKLEFTKMHGAGNDFVVLDGYSKSLSLNAAQVRALADRHFGVGA
                     DQLLLVEKPDIEGVDFKYRIFNCDGGEVEHCGNGARCFVKFVRDRGLTSKTSVRVQVH
                     HGVIVLTMQENGDVVVDMGCPEFEPALVPFDAEGLQGRTEGADTLWPLAVHGETRWVS
                     VVSMGNPHAVQIVADVENSPVLTEGPVIEHHARFPNRVNAGFMQIVNRGAVKLRVFER
                     GAGETLACGTGACAAVAAGIRRGLLDSPVQVQTHGGMLTIAWDGAHNAVAPLFMAGPA
                     TTVFEGEIELDPKLAHAD"
     gene            complement(1211..>1832)
                     /locus_tag="VKJ77_05605"
     CDS             complement(1211..>1832)
                     /locus_tag="VKJ77_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011850912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HMC44784.1"
                     /translation="AEKLAKLIQVDSEVDLLDPDMPPTLLLGFHFVAIEAASVWINYS
                     LHRTCGSLYQPMSNKALDEIAKKQRGRFDAEMASRADSARIVLRWLRDRKPVMLGADM
                     DYGMRNSTFVPFFGVQACTLTAVGRLAKTGHAQIMPFVGEVLPNYKGYRLRVFKPWDN
                     YPTGDDAADARRMNAFLEEQVRQMPEQYYWVHKRFKTRPPGEPGFY"
BASE COUNT          340 a          584 c          547 g          361 t
ORIGIN      
        1 agttcggcca agcggcgttc gatctgcttg ttcttgtcgc gcagcatctg catctgtcgc
       61 tcctgcagcg acaccgcgga cttgccatgc ggattggaca gccggatcgc gcccagcaac
      121 tcggcatgct cggcaaagaa atcgggattc gcgatgaggt agtcggcgac ttcacgttcg
      181 ttcatggtat cgggcagcat cgggttcctg acggtcagtc ggcgtgagcg agtttgggat
      241 caagctcgat ctcgccttcg aatacggtgg tggcggggcc ggccatgaat agcggggcca
      301 cggcattgtg cgcgccatcc caggcgatgg tcagcatgcc gccatgagtc tggacctgca
      361 ccggcgagtc gagcagaccg cgccggatac ccgccgcgac tgccgcgcat gcgcccgtgc
      421 cgcacgccag cgtttcgccc gcgccacgtt cgaaaacgcg cagcttcacc gcaccacggt
      481 tcacaatctg catgaatcct gcgttcaccc ggttcgggaa gcgcgcgtga tgttcaatca
      541 ctggcccctc ggtcagcacc ggtgaatttt ccacgtcggc cacgatctga acggcgtgcg
      601 gattacccat tgataccacc gagacccagc gtgtttcacc gtgcactgcg agcggccaga
      661 gcgtgtcggc gccttcggtg cggccttgca aaccttccgc gtcgaagggc accaaagcag
      721 gttcgaactc cgggcacccc atgtccacca ccacgtcgcc gttctcctgc atggtcagca
      781 cgatcacgcc gtgatgtacc tgtacccgaa cgctcgtctt gctggtgagg ccccggtcgc
      841 gaacgaactt cacaaagcag cgcgcgccgt tgccgcaatg ctccacttcg ccgccgtcgc
      901 aattgaagat gcggtatttg aaatcaacgc cttcaatgtc tggcttttcg accagcagca
      961 actgatctgc gccgacaccg aaatgccggt ccgcgagcgc gcgcacctgg gctgcgttca
     1021 gcgagagcga tttggagtag ccgtcgagca cgacaaagtc gttgcccgcg ccgtgcattt
     1081 tggtgaattc gagtttcatg acgctattgt aagtgacgcg cagcaagggc atgcactaga
     1141 ccgaatgggg gatgagcccg atcctgtgca gcaatcgccc gttgtttccc ggagacttgc
     1201 tacaagcccg tcaataaaaa cccggctcgc ccggcggtcg cgtcttgaag cgcttgtgca
     1261 cccagtaata ctgctcgggc atctgccgga cctgctcttc aaggaacgcg ttcatgcggc
     1321 gggcatcggc tgcatcgtcg ccggtcgggt agttgtccca gggcttgaac acccgcagcc
     1381 ggtaaccctt gtagttcggc agcacttcgc ccacgaacgg catgatttgc gcatgtccgg
     1441 tcttggccag gcgaccgacc gctgtcagcg tgcacgcttg cacgccgaag aacggcacga
     1501 aggtggaatt gcgcatgccg tagtccatgt cggccccaag catgacgggc ttgcgatcac
     1561 gcagccagcg cagcacgatc cgcgcgctgt ccgcgcggct cgccatttcg gcgtcgaaac
     1621 ggccacgctg cttcttcgct atttcatcga gcgctttgtt cgacatcggc tgatacagcg
     1681 atccgcaggt ccggtgcagt gagtagttga tccacactga agccgcctcg atcgcgacaa
     1741 agtggaagcc gagcaacaac gtgggcggca tgtcgggatc gaggagatcg acttcgctgt
     1801 ccacctggat cagcttggca agtttctccg cc
//
LOCUS       DATGBK010000387         2408 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_143508, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000387 DATGBK010000000
VERSION     DATGBK010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143508"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..597)
                     /locus_tag="VKJ77_05610"
     CDS             complement(<1..597)
                     /locus_tag="VKJ77_05610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007737480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HMC44785.1"
                     /translation="MPMESSQHRYRSQLETTSWFRGLPVELQDYLIGHANLRTLEKGQ
                     SLYRRDELSDGLYAVLGGALAIGTVGAEGKEALLAVLGPTAWIGEISLFDGLPRPNDA
                     TAVSRTLLLHVPESALRSLLDSTPRYWRDFALLMAQRLRVLFENTEAVALLPAAQRVA
                     SRLLVIAGGYGGLNATQNRIRLSQDSLASMVSLSRQTTN"
     gene            771..1535
                     /locus_tag="VKJ77_05615"
                     /pseudo
     CDS             771..1535
                     /locus_tag="VKJ77_05615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006490608.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
     gene            1621..>2408
                     /locus_tag="VKJ77_05620"
     CDS             1621..>2408
                     /locus_tag="VKJ77_05620"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007737478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008677 - 2-dehydropantoate 2-reductase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HMC44786.1"
                     /translation="MAKIFIYGAGSIGCYVGGRLLAGGNDVTFIGRARVADQLRRQGI
                     TLSRHDDSRWHVPPEHIDVSTDAASAAAADLVLVTVKSAATPTAAAELAAVLRPGTIV
                     VSFQNGIGNADVLRAALPHHIVLEGMVPFNVVERGPGGFHQGSAGELEIRHTPALQPF
                     IDAFRQAGLPLHQHVDMLPVQWAKLLLNLNNAINALANRPLKEELSLRAYRRCLAMAQ
                     KEALALLKRAGIRPAKVTPLPTSWIPHVLSVPDALFERLGRTMLT"
BASE COUNT          452 a          751 c          732 g          473 t
ORIGIN      
        1 gttggtggtt tgccgcgaca acgacaccat tgaagcgagg ctgtcttggg acagccttat
       61 cctgttctgc gtcgcattga gtccgccata acctccggcg atcaccagca gccggctcgc
      121 cacgcgctgc gccgcgggca acagcgcaac cgcctcggtg ttttcgaaca aaacccgcag
      181 tctttgcgcc atcagcagcg caaaatcgcg ccaatagcgg ggcgtggagt cgagcaggct
      241 tcgcagcgcg gactcgggca cgtgcagcaa aagcgtcctg ctgacggcag tggcgtcgtt
      301 cggacgcggc agcccatcga acagcgagat ttcccctatc catgcagtcg gtccgagcac
      361 cgcgagcaac gcctctttcc cctccgcacc cacggtgcca atagcgagtg ccccgccgag
      421 tacagcgtac agaccatcag acagttcgtc gcgccgatac agggattggc ccttttccag
      481 cgttcgaagg ttggcatgac cgatcagata gtcctgcaac tcgacgggca ggccccggaa
      541 ccacgaggtc gtttcgagct gtgaccggta gcggtgctgg ctggattcca ttggcatgtc
      601 gacttgtcgt gtatctgaca gattttaggc aggttcgcga acatcatggg gactcgcatc
      661 tgacccgctc gttacgccgc cgcgagcaaa tgcgcgaatt cgcagggcgc tgtcccgggt
      721 tattccatcg cttgaattat cgaacaagtc atccaacaag gagtgtcgac atggcctcat
      781 ctgatctcag tctgaaaaac gacgtatcac ctgcctaatg ggaagcgcga gtcaatctcg
      841 cagccgcgta ccgtctcact gcgctgttcg gatgggatga cctggtgttt acccacatct
      901 cggcgcgtgt gcccggtccg gagcaccatt tcctgatcaa cccatacggc atgatgttcg
      961 aagaaatcac cgcgtcgtcg ctggtcaaga tcgaccttca cggccgcaag gtttccgagt
     1021 caccgtacga cgtcaatcca gccggcttca cgatccacag cgccgtgcat gcagcacgcg
     1081 aagacgctca ttgcgtgatg cacactcact cggtcaacgg cgttgccgtg tcggcgcagg
     1141 aggcggggtt gctgccgctt tcgcagcagt cgctgggtgt gctggcgtcg ctcagctatc
     1201 acgattacga gggcatcgcc ctcaacgaag gcgagaagcc tcgtctcgtt caggaccttg
     1261 gcagcaacaa ttatctgatg ctgcgcaacc acggcctgtt gacggtcggc gctaccgctg
     1321 cggacgcctt cgtcgccatg tacttctttg aagcgtcctg catgattcag gtacgcgccc
     1381 agtcgggtgg tggaaagctg acagccatcc ctcagccgat tctcgccggt atcaaggagc
     1441 agattcgcgc ggtgacgagc ggctctccgg gcaagctggt gtggcctgga ttgctgcgtc
     1501 ggctggaccg ccgcaacact ggatatgctg actaggactg agagaacgac gtaagcgtca
     1561 cggaccgcgt ttgccgattc aacgcatcgc ggatgtgtgg gtgggttact gagaacctgt
     1621 atggcaaaga tctttatcta cggcgccggc tcgattggct gctatgtcgg cggacggctt
     1681 cttgcgggcg gcaacgacgt cactttcatc gggcgggcgc gcgtggccga ccagttgcgc
     1741 cgccagggca tcacgctgtc gaggcacgac gatagccgct ggcatgtgcc gccggagcac
     1801 atcgacgtgt cgacggacgc ggccagcgcc gccgcagccg atctcgtgct cgtcaccgtg
     1861 aagtctgctg caactcccac ggccgcggca gaactggcgg ctgtgcttcg gcccggcacg
     1921 atcgtcgtga gcttccagaa cggcattggt aatgcagatg ttctgcgcgc cgccctgccg
     1981 catcacatag tgctggaggg gatggtgcca ttcaatgttg tcgaacgcgg gcctggtgga
     2041 tttcaccagg gttcagcggg cgagctggag atccggcata cgccggccct gcagccgttc
     2101 atcgacgcgt tcaggcaagc gggtctgccg ctgcaccagc acgtcgacat gttgccggtg
     2161 cagtgggcga agctgttgct caatctcaac aatgccatca acgcgctggc gaaccggcct
     2221 ttgaaggaag agctctcgct acgcgcctac cggcgctgcc ttgccatggc gcagaaggaa
     2281 gcgctcgcgc tcctgaagcg ggccggcata cggccagcca aagtaacgcc gcttcccacc
     2341 tcctggatac cgcacgttct cagcgtaccc gatgcgttgt tcgaacgcct gggccgcacc
     2401 atgctgac
//
LOCUS       DATGBK010000388         2115 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_305508, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000388 DATGBK010000000
VERSION     DATGBK010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305508"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..498
                     /locus_tag="VKJ77_05625"
     CDS             130..498
                     /locus_tag="VKJ77_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008345939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RcnB family protein"
                     /protein_id="HMC44787.1"
                     /translation="MQGHNGGGYQDPRQAQNQTHGPQGGPGAQDHNNGRPPMPMHADN
                     SPGRAGPGGPRSEGPRDWHRGDRLPSDYRDRQYVVDDYRGYGLRQPPRGYRWVGVNGD
                     YVLAAIATGVIAQIVLSNGR"
     gene            complement(628..1212)
                     /locus_tag="VKJ77_05630"
     CDS             complement(628..1212)
                     /locus_tag="VKJ77_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC44788.1"
                     /translation="MDNHSSSTELLADLSPAERILVTAHALFYRDGIRATGIDRVIAE
                     SGVAKKTFYRYYPAKNALIVAFLEYRHRNWMTWFEDAVKRNGADADALVPALAEWFAS
                     DVYRGCAFINAVVEVGGTVPEAVDISRRHKLDMAAVIRTLLPASSRTAKADARALAMA
                     VDGAIVGAQFEDSPEVALKSLARVVKAITDTAKV"
     gene            1369..1836
                     /locus_tag="VKJ77_05635"
     CDS             1369..1836
                     /locus_tag="VKJ77_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HMC44789.1"
                     /translation="MESKPPFPPFDADTARQKVRLAEDGWNSRDPKRVALAYSEDTRW
                     RNRAEFVSGRAEVEAFLARKWARELDYRLIKELWAFTGSRIAVRFAYEWHDDSKNWFR
                     SYGNENWEFNEAGLMTHRHACINDLPIKESERKYHWPLGRRPDDHPGLSDLGF"
     gene            complement(1912..>2115)
                     /locus_tag="VKJ77_05640"
     CDS             complement(1912..>2115)
                     /locus_tag="VKJ77_05640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HMC44790.1"
                     /translation="QSNRTLFTLTLVTVLALPINIVAGIFGMNVGGVPLADNKHGFWL
                     MVAIVATFTVLAGWWAFYRRRGR"
BASE COUNT          442 a          656 c          623 g          394 t
ORIGIN      
        1 aagaaaagcc atattgctgc tgcagtactg tttacaagct tcggtctgac ggccacggcg
       61 tttgcccaaa acggtcccgg cggcccgggc gatcaaggtg gacagcaaca gcgtccgggc
      121 ggccccgcca tgcaaggcca caacggcggc ggttatcagg acccacgtca ggctcagaac
      181 cagactcacg gcccgcaagg cggcccaggt gcccaggacc acaacaatgg ccgtccgccc
      241 atgccgatgc atgcggacaa tagtccggga cgcgccggtc ctggtggccc gcgtagcgag
      301 ggcccgcgtg actggcaccg cggagaccgg ttgccgagcg actatcgcga tcgccaatac
      361 gtggtcgacg attatcgcgg gtacggattg cgtcagcctc cgcgcgggta tcgctgggtg
      421 ggcgtgaacg gcgattacgt gcttgccgca atcgcaaccg gcgtgatcgc gcagatcgtg
      481 ctgagcaacg ggcgctaagc ccttactccc cgaacgctat cgtagcgaat taaaccgaga
      541 gtggagtcga caaggccggt ccaagcgcga gtttggaccg gccttgtttc atgtgcgtgg
      601 cgtgggcgtt cctacgccgc cgccgcgcta tacctttgcg gtatcggtaa ttgctttaac
      661 gacgcgcgcg agcgacttca atgccacttc gggcgagtct tcaaactggg cgcccacgat
      721 ggcgccatcc accgccatgg ccaatgcccg cgcatcggcc tttgcggttc tcgacgatgc
      781 cggcagcagc gtcctgatga ccgccgccat gtccagcttg tggcgccgtg aaatatcgac
      841 cgcctcgggc acggtcccgc ccacttccac caccgcgttg atgaacgcac agccgcgata
      901 cacatcgctc gcgaaccatt ctgccagcgc gggaactagc gcatccgcgt ctgcgccgtt
      961 acgcttcacg gcatcttcga accacgtcat ccagttgcgg tgcctatact caaggaatgc
     1021 aacgatcaga gcgtttttcg ccgggtagta gcgataaaac gtcttcttcg cgacgcccga
     1081 ttccgcgatc acacgatcga ttccggtcgc acgaatgcca tcccgataga acagcgcgtg
     1141 ggccgtgacc agaatgcgct cggccggcga gaggtctgcc aaaagctctg tacttgatga
     1201 atgattgtcc atagcatctg attgtagaca ggtctgtctc cctgcgctag agtgaggcgg
     1261 tagacagacc tgtctactac tggattatcc tgccggccga aaacacaatc gacacaatca
     1321 acgttacttc agccgccaat caactctcca cgatcaaaag gaagcgccat ggaaagcaaa
     1381 ccgccgttcc cgccattcga tgccgacacc gctcggcaaa aggtccgtct cgcggaagac
     1441 ggctggaatt cccgcgaccc gaagcgcgtt gccctcgcgt atagcgaaga cacacgctgg
     1501 cgcaaccgcg cggagtttgt gtcgggacgc gctgaagtgg aggcgttcct ggcgcgcaaa
     1561 tgggcgcgtg agctggacta ccggctgatc aaggaattgt gggcgttcac cggatcacgg
     1621 attgcggtgc gcttcgctta tgaatggcac gatgattcca aaaactggtt ccgcagctac
     1681 ggcaatgaga actgggagtt caacgaagct ggcttgatga cgcatcggca tgcgtgcatc
     1741 aacgacttgc cgatcaagga gtccgagcgc aaatatcact ggccgctggg ccgccgtccc
     1801 gacgatcacc ctggcttgag cgacctggga ttttgattga agcttggccg gcagtctctt
     1861 ggatcattga ggtgcctttc atgcttcaca aagcaggatc gcatcgggtg actaccggcc
     1921 tcgccgccgg taaaaggccc accatcccgc cagcacggtg aaggtagcaa cgatcgccac
     1981 catcagccag aacccgtgtt tgttgtcggc cagcggcacg ccgccaacat tcatgccgaa
     2041 aatccctgcg actatattga tcggcagagc cagcacggtg accagcgtca gcgtgaaaag
     2101 cgtgcggttg ctttg
//
LOCUS       DATGBK010000389         4602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_282341, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000389 DATGBK010000000
VERSION     DATGBK010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4602
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282341"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..289)
                     /gene="zapE"
                     /locus_tag="VKJ77_05645"
     CDS             complement(<1..289)
                     /gene="zapE"
                     /locus_tag="VKJ77_05645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011402415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AFG1/ZapE family ATPase"
                     /protein_id="HMC44791.1"
                     /translation="MNVNEYYENELQTRGYQSDAAQLAAVERLQRCYDEWSTYKARRS
                     NAFKKLIVHPELPRGVYMWGGVGRGKSFLMDSFFAVVPVQRKTRLHFHEFMR"
     gene            complement(410..1840)
                     /gene="lpdA"
                     /locus_tag="VKJ77_05650"
     CDS             complement(410..1840)
                     /gene="lpdA"
                     /locus_tag="VKJ77_05650"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HMC44792.1"
                     /translation="MSKEFDVVVIGAGPGGYIAAIRAAQLGKSVACIEGWKNPAGNLK
                     LGGTCLNVGCIPSKALLASSEEFENVLHHLGDHGINVGDVKLDLSKMLARKEGIVEKM
                     TKGIEFLFRKNKITWLKGHGKFTGKTDAGVQIEVSGEAETETVTAKNVIIATGSKARH
                     LPGIPVDNKIVADNEGALSFDAVPKKLAVIGAGVIGLELGSVWRRLGADVTVLEALPA
                     FLGACDDSLAKEAAKQFKKQGLDIHLGVKIGEVKTTDSSVSVAYTDKDGNAQTLDADR
                     LIVSIGRVPNTDNLGLEAIGLKTDERGFVPVDDHCATSVPNVYAIGDVVRGPMLAHKA
                     EDEGVLVAEIIDGQKPHIDYNCIPWVIYTEPEIAWVGKTEQQLKAEGREIKTGQFPMM
                     ANGRALGIGKADGFVKMIADAKTDELLGCHIIAANASDLIAEAVVAMEFKAASEDIGR
                     ICHPHPSLSEVMREAALAVDKRALNM"
     gene            complement(1945..3246)
                     /gene="odhB"
                     /locus_tag="VKJ77_05655"
     CDS             complement(1945..3246)
                     /gene="odhB"
                     /locus_tag="VKJ77_05655"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HMC44793.1"
                     /translation="MSIVEVKVPQLSESVSEGTLLTWKKKPGEAVAIDEILVEVETDK
                     VVLEVPAPAAGVLAQVIKHDGDIVTAEELIATIDTEAKAGAAPAAAAAGAAEVQPAPA
                     AQPQQEAAPATATASASNTSASPSAAKILAEKNVSSDQVSGSGRDGRITKGDALAATQ
                     GAPAVSAAVSAPAAKAAAPAKAARPSLPDVKAPGADQWLKDRPEQRVPMSRLRARIAE
                     RLLESQQTNAILTTFNEVNMAPVMDLRNKYKDKFEKEHGVKLGFMSFFVKAAVHALKK
                     YPLVNASIDGNDIVYHGYFDIGIAVGSPRGLVVPIVRNADQLSLADIEKKIAEYGVKA
                     RDGKLSIEEMTGGTFSISNGGVFGSMLSTPIINPPQSAILGVHATKERAVVENGQIVI
                     RPMNYLALSYDHRIIDGREAVLSLVAMKDALEDPARLLLDL"
     gene            complement(3472..>4602)
                     /gene="sucA"
                     /locus_tag="VKJ77_05660"
     CDS             complement(3472..>4602)
                     /gene="sucA"
                     /locus_tag="VKJ77_05660"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004526855.1"
                     /note="SucA; E1 component of the oxoglutarate
                     dehydrogenase complex which catalyzes the formation of
                     succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
                     reaction of 2-oxoglutarate with dihydrolipoamide
                     succinyltransferase-lipoate to form dihydrolipoamide
                     succinyltransferase-succinyldihydrolipoate and carbon
                     dioxide; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HMC44794.1"
                     /translation="HPLVERVINDRRAMGRGEAKLDWGMGEHLAYASLVASGYAVRLT
                     GQDSGRGTFTHRHAVLHDQNRERWNDGTYIPLQNIAEGQAKFTVIDSVLSEEAVLGFE
                     YGYSTAEPNTLVAWEAQFGDFVNGAQVVIDQFISSGEVKWGRVSGLTMLLPHGYEGQG
                     PEHSSARIERFLQLCADHNMQVVQPTTPAQIFHLLRRQMIRLFRKPLIVATPKSLLRH
                     KEAVSDLSELAKGSFQPIIGEVDGTIEPKKVKRVIVCSGRVYYDLVAHRREAKANDIA
                     IIRIEQLYPFAHKQFDAEIKKYENANEVVWTQDEPQNQGAWFYVEHHLREGMREGQKL
                     AYSGRPASASPAVGYYAKHYEQLKSLIEGAFGRLKCAQTISK"
BASE COUNT          878 a         1478 c         1259 g          987 t
ORIGIN      
        1 cgcgcatgaa ctcgtggaaa tgcaggcgtg tcttgcgctg caccggcacg accgcgaaga
       61 agctgtccat caggaagctc ttgccgcgcc ccacgccacc ccacatgtag acgccacgcg
      121 gcaactccgg gtgcacgatc agcttcttga acgcattcga gcggcgcgcc ttgtaggtgc
      181 tccactcgtc gtagcaacgt tgcaaacgtt cgaccgccgc cagttgcgcc gcgtccgact
      241 gataaccccg cgtctgcagt tcgttttcgt agtattcgtt gacgttcatg gtgcgaggga
      301 ctagcgccct gaagtaagcc caatgaggaa gctaaaggtc gtggataaaa caaaggcgag
      361 cgggaaaact cccgcccgcc ttcgtcttgc tgctcaaacc gtgctgcaat tacatattga
      421 gcgcgcgttt gtcgacggcg agcgcggctt cgcgcatcac ttcggacaac gacgggtgcg
      481 gatggcagat ccggccgata tcttccgatg ccgccttgaa ctccatcgcc accacggctt
      541 cagcgatcag gtccgacgcg ttcgccgcga tgatgtggca accgagcagt tcgtcggtct
      601 tggcatcggc gatcatcttc acgaacccgt ccgccttgcc gatacccagc gcgcggccgt
      661 tcgccatcat cgggaactgg ccggtcttga tctcgcggcc ttcggccttg agctgctgtt
      721 ccgtcttgcc gacccacgca atttccggtt cggtgtagat cacccacgga atgcagttgt
      781 agtcgatatg cggcttctga ccgtcgataa tctcggccac cagcacgcct tcgtcttctg
      841 ccttgtgcgc gagcatcggg ccacgcacca cgtcgccgat tgcgtacacg ttcggcacgc
      901 tggtcgcgca gtggtcatcg acgggaacaa aaccgcgttc gtccgtcttc aggccgatgg
      961 cttccagacc gaggttgtcc gtgttcggca cgcggccgat cgacacgatc aggcggtcag
     1021 cgtcgagcgt ctgcgcgttg ccgtccttgt ccgtgtaggc cactgagacg cttgaatccg
     1081 tcgtcttcac ttcgccgatc ttcacgccga ggtgaatatc gagaccttgc ttcttgaatt
     1141 gcttcgcagc ttctttcgcc agcgagtcat cgcacgcgcc aaggaacgcg ggcaacgctt
     1201 caagcacggt cacgtccgcg cccaaacgac gccacaccga acccagttcc agaccgatca
     1261 cgccagcacc gatcacagcg agcttcttcg gcacggcgtc gaacgacagc gcgccttcgt
     1321 tgtcggcaac aatcttgttg tcgaccggaa tgcccggcag atgacgcgcc ttcgatcccg
     1381 tcgcgatgat cacgttcttc gccgtcacgg tttcagtttc tgcttcgccg ctcacttcga
     1441 tctgcacacc ggcgtccgtc ttgccggtga acttgccgtg acccttcagc cacgtgatct
     1501 tgttcttgcg gaacaggaat tcgatcccct tcgtcatctt ctcgacaatg ccttccttgc
     1561 gggcaagcat cttcgagaga tcgagcttca catcacccac gttgatgccg tgatcgccga
     1621 gatgatgcaa aacgttttca aattcttccg acgaagccag caacgccttc gacggaatgc
     1681 agcccacgtt aagacacgtg ccgccgagct tcagattacc ggccgggttc ttccagcctt
     1741 caatacacgc aaccgacttg ccgagttgcg ctgcacgaat cgccgcgatg taaccgccag
     1801 ggcctgcacc aatcacgacg acatcaaatt ctttggacat gactatcctt ctcttgttgg
     1861 atacacggcg cgcccgagcc tatcaagcgc gccatgagtc ccaaataagg ttttactgcc
     1921 agatttaaag ggccaacgca gggcttacag gtccagcagc aagcgcgccg gatcttccag
     1981 cgcatctttc atcgcgacca gcgacaacac ggcttcgcgt ccgtcgatga tccggtggtc
     2041 gtaagacagc gccaggtagt tcatcggacg aatcacgatc tggccgttct cgaccaccgc
     2101 gcgttccttc gttgcatgca cgccgaggat agccgactgc ggcgggttga taatcggcgt
     2161 ggacaacatg gaaccgaaca caccgccgtt cgagatcgag aacgtaccac ccgtcatttc
     2221 ctcgatcgac agcttgccat cgcgcgcttt cacgccgtat tcagcaatct tcttctcgat
     2281 gtcagccagg ctcaattgat ccgcattgcg aacgatcggc accacgagac cacgcggcga
     2341 accgacggca ataccgatgt cgaagtagcc gtgataaacg atgtcgttac cgtcgatcga
     2401 cgcattcacc agcgggtact tcttcagcgc gtggacggca gccttcacga agaacgacat
     2461 gaaaccgagc ttcacgccat gttccttctc gaacttgtcc ttgtacttgt tgcgcagatc
     2521 catcaccggc gccatgttca cttcgttgaa cgtggtcagg atggcgttgg tttgctgcga
     2581 ctcgagcaga cgctcggcaa tacgtgcgcg cagacgcgac atcggcacgc gttgttccgg
     2641 acggtccttc aaccattgat cggcacccgg cgcctttaca tccggcagcg acggtcgtgc
     2701 ggccttggcg ggggcagcgg cctttgcagc gggggccgag acggcagcgg aaacagccgg
     2761 cgcaccttgc gtcgcagcta gtgcatcgcc cttcgtgata cggccatcgc ggcccgaacc
     2821 cgacacctga tcgctcgata cgttcttctc ggccaggatc ttggcagccg agggcgaagc
     2881 cgacgtgttc gaagcgctgg ccgttgccgt tgccggcgca gcttcctgtt gcggttgcgc
     2941 agctggtgcc ggttgcactt cggcggcgcc tgcagcggca gcagccggtg ctgcgccagc
     3001 cttcgcttcc gtgtcgatcg tcgcgatcaa ttcttcggcc gtgacgatat cgccgtcatg
     3061 cttgatcact tgcgccagca cgcctgcggc cggtgccggc acttccagca cgactttatc
     3121 cgtttcgact tcgacgagaa tttcgtcgat ggcaactgct tcgcccggct ttttcttcca
     3181 cgtcagcaaa gtgccttccg acacggactc agagagctgg ggaaccttga cttctacgat
     3241 agacattatg ttttttcctg aatgtatctg ggtacaacgt caattcttgg gaagttcgac
     3301 gccgtcaatt cttggatgat cagagcgtgc aaatgcagcg cgcgtccaac gggttttacc
     3361 ggtcgcgagc gctgcttgtg cattccacgt tcaaaatcga aactcgaatc acaggacagc
     3421 gcatgaaaaa ccggggagcc gccaactgcg gcactccccg gtcacagccg tttacttcga
     3481 gattgtctgc gcgcacttca accggccaaa cgcgccttcg atcagcgact tcagctgctc
     3541 gtagtgtttc gcgtaatagc cgactgccgg ggatgccgat gccggacggc cgctgtaagc
     3601 cagcttctgt ccttcacgca tgccttcacg cagatggtgc tcgacgtaga accaggcgcc
     3661 ctggttctgc ggctcgtcct gtgtccagac cacttcgttc gcgttttcgt atttcttgat
     3721 ttccgcgtcg aactgcttgt gggcgaacgg atacaactgc tcgatacgga tgatcgcgat
     3781 gtcgttcgcc ttcgcttcgc gacgatgcgc taccaggtcg taatacacgc gacctgaaca
     3841 cacgatcacg cgcttgacct tctttggctc gatcgtgcca tccacttcgc cgatgatcgg
     3901 ctggaacgaa cccttcgcca gctccgacag atccgacact gcttccttat ggcgcagcag
     3961 cgacttcggc gtagcgacga tcagcggctt cctgaacaag cggatcatct gacggcgcaa
     4021 cagatggaaa atctgcgccg gcgtggtcgg ctggaccact tgcatgttgt gatccgcgca
     4081 aagctgcagg aaccgttcga tacgtgccga cgagtgctcc ggaccttgcc cttcgtaacc
     4141 gtgcggcaac agcatggtga gacctgacac acggccccac ttcacttcgc ccgacgagat
     4201 gaactggtcg atcaccactt gcgcgccgtt cacgaagtcg ccgaattgcg cttcccacgc
     4261 gacgagcgtg ttcggttccg cggtcgaata accgtactcg aaaccgagca ctgcttcttc
     4321 cgacaacacc gagtcgatca ccgtaaactt cgcctgacct tcagcgatgt tctgcagcgg
     4381 aatgtacgta ccgtcgttcc agcgctcgcg gttctggtcg tgcagcacag cgtgacggtg
     4441 cgtgaacgtg ccacggcctg aatcctggcc cgtgagacgc acggcgtaac ccgatgccac
     4501 cagcgacgcg taagccagat gctcgcccat gccccagtcg agctttgctt cgccacggcc
     4561 cattgcgcgg cgatcgttaa tcacgcgctc gaccagcgga tg
//
LOCUS       DATGBK010000390         1582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_190017, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000390 DATGBK010000000
VERSION     DATGBK010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190017"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..379)
                     /gene="earP"
                     /locus_tag="VKJ77_05665"
     CDS             complement(<1..379)
                     /gene="earP"
                     /locus_tag="VKJ77_05665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0106361 - protein-arginine
                     rhamnosyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P maturation arginine
                     rhamnosyltransferase EarP"
                     /protein_id="HMC44795.1"
                     /translation="MPSSSEQLPAASGHASVDPSAPATDIACDIFCAVIDNFGDIGVC
                     WRLARQLASEHDWQVRLFVDDLKAFHALCPDIDPALDRQSAAGVMIEHWHAPSHAGDT
                     LQIADVVIEAFACELPPVYVAAMA"
     gene            655..>1582
                     /gene="uvrC"
                     /locus_tag="VKJ77_05670"
     CDS             655..>1582
                     /gene="uvrC"
                     /locus_tag="VKJ77_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HMC44796.1"
                     /translation="MTDSDVFDPKKSLAQLPHLPGVYRYYDEQGNVLYVGKARDLRKR
                     VSSYFTKTLLSPRIAMMVTRIRKIETTVTRSEAEALLLENNLIKALAPRYNILFRDDK
                     SYPYLKLTGHKFPRMAYYRGGVDKKNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSV
                     FTNRTRPCLLHQIGRCTGPCVGLINEEDYARDVSNASRFLLGRQGEVMKELEQKMHAF
                     AADLKFEQAAAVRNQMSSLSTVLHQQAIEVGGDNDVDILAVVALGGKVCVNLAMVRGG
                     RHLGDKAYFPTHVEAALAMEDAMPEELAGDDFV"
BASE COUNT          315 a          462 c          497 g          308 t
ORIGIN      
        1 gtgccatggc ggccacgtac accggcggca actcgcacgc gaacgcttcg atcacgacat
       61 cggcgatctg cagcgtgtcg ccggcgtgcg acggcgcatg ccagtgctcg atcatcacgc
      121 ctgccgcact ttggcggtcg agcgcgggat cgatgtctgg gcagagcgca tgaaaggcct
      181 tgaggtcatc gacgaacagc cgcacttgcc agtcgtgttc gctggctagt tggcgtgcga
      241 gccgccagca gacgccgatg tcgccgaaat tgtcgatgac cgcgcagaaa atatcgcacg
      301 cgatgtcggt ggctggagcg ctgggatcga cgctggcatg gccggaagca gccggcaatt
      361 gttccgatga agacggcatg ggcaatagag cggcgatgaa ccgctaatga atggtgaaga
      421 atggtggaca gcggtttgaa ctaaactggc gttttcaagg ataacgattc gtgcggtgcg
      481 gtgcgctgcg ttactgttgc gttacggtcc cgctacggtc gagtccgagg catgcttggg
      541 ccggcgtagt tctcgcggac tcgggcgtgc gtcgcgcttc gtccacgctc cgcccgaaac
      601 ctataagact attttgctga actcaagcta cgcgctcccc gccatcatcc ctgcatgaca
      661 gactccgacg ttttcgaccc taaaaaaagc ctggctcagt tgccgcactt gccgggcgta
      721 taccgctact acgacgagca gggcaacgtg ctgtacgtcg gtaaggcgcg cgacctgaga
      781 aaacgcgtgt cgagctattt tacgaagaca ctgctttctc cgcgcatcgc gatgatggtt
      841 acgcgcattc gcaaaattga aaccacggtc acgcggtccg aagctgaagc gctgctgctc
      901 gagaataatc tgatcaaggc gctcgcgccg cgctacaaca tcctgtttcg cgacgacaag
      961 tcgtatccgt atctgaagct cacgggccac aagtttccgc gcatggcgta ctaccgtggc
     1021 ggcgtcgaca agaagaacca gtacttcggc ccgttcccga gcgcgtgggc cgttcgcgaa
     1081 agcatccaga tcctgcaacg cgttttccag ttgcgcacct gcgaggattc cgtcttcacc
     1141 aaccgtacgc ggccttgtct gctgcatcag atcggacgtt gcaccggtcc gtgtgtcggc
     1201 ctgatcaacg aagaggatta cgcacgcgat gtgtcgaacg catcgcgttt cctgctcgga
     1261 cgccagggcg aagtgatgaa ggaactcgag cagaagatgc acgcgttcgc cgccgatctc
     1321 aagttcgaac aggccgcggc tgtgcgcaac cagatgagct cgctgtccac cgtgctgcat
     1381 cagcaggcca tcgaggtagg gggcgacaac gacgtcgata tcctcgcggt cgtcgcgctg
     1441 ggcggcaagg tgtgtgtgaa tctcgcgatg gtgcgcggcg gccggcatct cggcgataaa
     1501 gcctatttcc cgacgcacgt ggaggcggcg ttggccatgg aggacgcgat gccggaagag
     1561 cttgccggcg atgacttcgt gg
//
LOCUS       DATGBK010000391         2458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_28160, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000391 DATGBK010000000
VERSION     DATGBK010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28160"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..167
                     /locus_tag="VKJ77_05675"
     CDS             <1..167
                     /locus_tag="VKJ77_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HMC44797.1"
                     /translation="SAKLVQNIKLAEAMVGLGTEPVRPPRLPLAGDERLAVEALIKRS
                     IETRPVLPTF"
     gene            531..1055
                     /locus_tag="VKJ77_05680"
     CDS             531..1055
                     /locus_tag="VKJ77_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44798.1"
                     /translation="MHLEDLPMSGQEASIPRAPASVPLRRNLSVAITPLNAARNPERT
                     EAIREVVDAFRNLRASVARFVLMLEDIRGNARSLESTTGQPLGDLLSSLEDHARALDF
                     GRLDDLTFAIETARTAEQQRDQVFLAAPGSGTAGLQQVARSLERLDATFVGLCVEHVL
                     ERHYRDRASNDVSA"
     gene            1253..>2458
                     /locus_tag="VKJ77_05685"
     CDS             1253..>2458
                     /locus_tag="VKJ77_05685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HMC44799.1"
                     /translation="MQSVPPFRLARTPSTESTSATGAYTGTHTGAADACCAPTDAQLR
                     SPHRRARLSDLDSHLHCSVIGTCLSTNELRKLVPKFTNLDRQHATDLEIHHAAVELAI
                     DGGAGAKALQKALDARYSGAVRRFEAAKNPEALLALWKDALKSGDIPPAYWALMSHPE
                     AVMSVRQTAFGDLHMLSHLVGAANRADIRRLVALEEENAALKDKIERQQDKLHELTTE
                     RDASLRQLSAQVAELTAKAERKPDTSEAGLEAEVQALREALAARDERLAIHTSRRETA
                     EQRALDEQRHAQSLSQRLDDAIAMLNVVQAECNALEQALVAQGSEAGSKAEELVNLSG
                     KRVVYVGGRPGSNAALRQLVESAGGDFVVHDGGIEDRKGMFAAALPRADIVVFPVDCI
                     DHDSMNLLKR"
BASE COUNT          492 a          785 c          719 g          462 t
ORIGIN      
        1 tctcggccaa gctggtgcag aacatcaagc tggccgaggc catggtcggt ctgggcaccg
       61 aaccggtccg gccgccgcgc ttgccgctgg caggcgacga acgtctcgcg gtggaagcgt
      121 tgatcaagcg ttcgattgaa acccggccgg ttttgccgac gttctaaatc gagtttttcc
      181 gcggcggctt gggcttgttc tccttgaaac aagtccgtag tcgccgcagt tttattccct
      241 ttttcctcac cccgccgcag tttcattgct gaccgttagc gcccctcccg atccgccagt
      301 cggaaaaaac aaaacgagcc tgtcctggct ccgtccacct cgcccagcgc ccggccgcct
      361 gaacataaaa gcagcccgtc tgcaggcgct ccaaagcctc aaaaccgccc aagtaccggc
      421 taacccccaa aggcgcaaaa cagctattcg ttatatccta cggaatatca cgatactatt
      481 tttttgctcc cgaatattca gcttgccggc gcaaagaaac cgatccaatc atgcatctcg
      541 aggatttacc catgtccggg caagaggcat cgataccccg cgctcccgct tccgtcccgc
      601 tgcgccgcaa cctgtcggtc gcgatcacgc cgctcaacgc ggcgcgcaac cctgagcgca
      661 cggaggcgat cagggaagtg gtcgatgcat tccggaacct gcgcgcaagc gtcgcccgtt
      721 ttgtcctcat gctcgaggac atccgcggta acgcccgctc cctcgaatcc acgaccggcc
      781 agccgctcgg cgaccttttg tcgtcccttg aagatcacgc tcgcgcgctc gacttcggcc
      841 gcctcgacga cctgacgttt gccatcgaaa ccgccagaac agctgagcag cagcgggatc
      901 aggtatttct ggccgcgccc ggcagcggca cggcaggtct tcagcaggtt gcgcgaagtc
      961 tcgaacgcct ggacgccacc ttcgtcggct tatgcgtcga gcacgtgctt gaacggcact
     1021 atcgggaccg tgcgagcaac gacgtgtctg cctgaacgtc ggcgtccttt acgttgggac
     1081 catcagcacc atcaggacca tcgggcattg atttcatcga agcaaccgtc cagattcgta
     1141 ccgttatatt caatggtata tttcgatatc cgttcatcga gcaggctaaa ggccgttgtc
     1201 tgttcagccg tttgacatcc acgtttgaca tccagatcga ttcgaggtga atgtgcaatc
     1261 cgttcccccc ttccgccttg cccgcacgcc gtccactgaa tcgaccagcg ctacgggtgc
     1321 ttacaccggc actcacaccg gtgcggcgga tgcctgctgt gcgcctaccg acgcacagct
     1381 tcgcagtccg caccgccggg cacggctgtc agatctggat tcgcatttgc attgctccgt
     1441 catcggcaca tgcctgagca cgaacgagct tagaaaactc gtgccgaagt ttacgaatct
     1501 cgaccggcaa cacgcgacgg atctggagat tcatcacgcc gcagtggagc ttgccataga
     1561 cggtggcgcg ggcgccaagg cgctgcagaa ggcgctcgat gcccgttact cgggcgcggt
     1621 gcgccgcttc gaagcggcaa agaatcctga ggccctgctg gcgctgtgga aagacgcgct
     1681 caagagcggc gatattccgc cggcgtactg ggcgttgatg tcccatccgg aagccgtcat
     1741 gagcgtgcgc cagacggcgt tcggcgacct gcatatgttg tcccatctgg tgggcgcggc
     1801 caaccgggct gacatccgcc gcctggttgc actcgaagaa gaaaatgcgg cgctcaagga
     1861 caagatcgag cggcagcaag acaagctgca cgaattgacc actgagcgcg acgcgtcact
     1921 acgccaattg agcgcgcaag tggccgagtt gacggcgaag gccgagcgca agccagatac
     1981 ctcggaagca ggtctggagg ctgaagtcca ggcgctgcgc gaggcactgg ccgcacgcga
     2041 cgaacgcctt gctattcata cgagccgccg ggaaaccgcc gagcaacgcg cgctcgacga
     2101 gcagcgccat gcgcagagct taagccagcg gctggacgat gccattgcga tgctcaacgt
     2161 cgtccaggct gaatgcaacg cactggaaca ggcgctggtg gcacagggta gcgaagccgg
     2221 ttcaaaggct gaggaactcg ttaacctgag cggcaagcgc gtggtttatg tgggcggccg
     2281 gcccggttcg aacgccgcgc tgaggcaact ggttgagtcg gcgggaggcg attttgtcgt
     2341 ccacgatggc ggcatagagg accgcaaggg catgttcgcc gctgcgctcc cacgagcgga
     2401 cattgtcgtg tttccggtcg actgcataga ccacgactcc atgaacctgc tcaagcgc
//
LOCUS       DATGBK010000392         2479 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_212987, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000392 DATGBK010000000
VERSION     DATGBK010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2479
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212987"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VKJ77_05690"
     CDS             complement(<1..225)
                     /locus_tag="VKJ77_05690"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HMC44800.1"
                     /translation="MLHIETPLILHPGLSTSTRRIWLKLENLQPSGSFKMRGMGLLCS
                     RAKAAGKRRVVCPSGGNAGFATAFVARLLGM"
     gene            complement(626..1666)
                     /locus_tag="VKJ77_05695"
     CDS             complement(626..1666)
                     /locus_tag="VKJ77_05695"
                     /inference="COORDINATES: protein motif:HMM:NF024039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC44801.1"
                     /translation="MKTDGVPVSHALLARLETLGVDVPRTFRAAGLPVPAAVNADPGR
                     LRLTTQKYFALWEAIAQVSGDPAIGLRIGAETSHGQLDAMSLAALHSANFGEALAKLG
                     RYKRLSCPEEVVVTVQRDEAAVTFRWLLADGFIPDLLADAMFASALAMARRGSGVAVK
                     PRRVELTRRAANRAMFARHYGCEIVFDAPNDVLVFDAASLALPFVTHNVDLLAAVLPQ
                     LDAGLAELAREQTFTDYVDAVLARNMRGQRPSVEALARELAISTRTLQRKLALDGTSY
                     QQQLDRVRSRIARRLLGSTDLAAGEIAWFLGFEEVNSFFRAFNQWEGMTPQRWRGTEG
                     VGRDRSFLEPII"
     gene            complement(1674..>2479)
                     /locus_tag="VKJ77_05700"
     CDS             complement(1674..>2479)
                     /locus_tag="VKJ77_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012372784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC44802.1"
                     /translation="RLVATARRPEDLAALVEQYGERVRAVTLDVTDPASARAAVQQAV
                     EAFGRLDVVVNNAGYGNIASIEEGDDADFRAQMETNFYGVANVTRAALPVLRAQRSGH
                     IIQVSSIGGRVGSPGLAAYQSAKWAVEGFSEVLSKEVASLGIKVTIVEPGGFRTDWAG
                     SSMTIHPPGPDYAASIAPLLDYRASHRPVGDPAKAAQAILGIAGLDEPPLRLLLGSDA
                     VHIAGQVHEARGAMDAKWRHVSLSTDAGDATEWRGLIDKLDIAKQPVRD"
BASE COUNT          476 a          813 c          751 g          439 t
ORIGIN      
        1 catgccgagc aagcgcgcta cgaatgcggt tgcaaaaccg gcgttgccgc ccgacgggca
       61 aaccacgcgg cgcttgccgg ccgctttcgc gcgcgaacac agcaagccca tcccacgcat
      121 tttgaacgag ccgctgggct gcagattttc gagcttgagc cagatgcggc gtgtggacgt
      181 ggacaggccg ggatgcagga tcaacggggt ttcgatgtga agcaagatcg gtccttttca
      241 aacgggaatt ccggaaccag gtcaccgcca tgacggccgc gactggattt gagtcccata
      301 gtttattgca ggacggggat tttatcgttg tgcgttgtgg cgtgtgaccg gtttggccct
      361 ctggataggc ctgcgcgaac gcatgagttc gccggccgcg ggatgtccag tccggtttgg
      421 ccatcgtttt gtctcatctg ccgccggaca ccggccacat gatgatgctt gggcaaccag
      481 aggtattcag cgacattgtt cgctcgatga tcgaacactg acgcaaccgc gcaccgggat
      541 gaagcgatga ggcttgatcg ccgctgggaa cctgctattg cttgcgggtg gcaaaatacc
      601 aagatcatct aatcagcatc ccgaatcaaa taatgggttc taagaacgag cggtcacggc
      661 ccacaccctc ggtccctctc catcgctgag gtgtcatccc ttcccactga ttgaacgccc
      721 ggaaaaacga gttgacctct tcaaagccta aaaaccacgc aatctcgccg gccgcgagat
      781 ccgtactacc cagcaagcgg cgtgctatcc gactacgcac ccggtcgagc tgctgctgat
      841 aactcgttcc atcgagtgca agcttgcgtt gcagcgttcg cgtgctgatc gcgagctccc
      901 gcgccagcgc ttcaacgctc ggccgctggc cgcgcatgtt ccgcgcgaga acggcatcga
      961 cgtaatcggt gaaagtttgc tcgcgggcaa gctcggccag tccggcatcg agttgcggca
     1021 gcacagcggc aagtaaatcg acgttatgcg tcacgaaagg cagcgcgaga cttgccgcgt
     1081 cgaatacgag aacatcgttc ggggcatcga acacgatctc gcaaccataa tggcgcgcga
     1141 acatcgcccg gttggccgcc cgccgcgtca gctccacgcg acgcggtttg accgcgacac
     1201 ccgatccgcg ccgcgccatg gccaacgccg acgcgaacat ggcgtctgcc agcaggtcgg
     1261 ggataaaacc gtcggccagc aaccagcgga acgtcacagc cgcctcgtca cgctgcacgg
     1321 tgaccaccac ctcctctgga caactcagcc gcttgtaacg cccgagcttc gccagcgcct
     1381 cgccgaaatt ggcggaatgc agcgcggcga gagacattgc gtcgagctgc ccgtgggaag
     1441 tttcagcacc aatccgcaag ccgatggccg ggtccccgct cacctgcgcg atagcctccc
     1501 acagcgcgaa gtatttctgc gtcgtcagtc gcaaccggcc cgggtcggca ttcaccgctg
     1561 ccggcacggg caggcccgcc gcgcggaacg tgcgcggcac atccacgccc agcgtttcaa
     1621 gccgtgcgag tagtgcgtgg ctgaccggaa cgccatcggt tttcataagc ctctcagtcc
     1681 ctgacgggct gcttcgctat atcgagttta tcgatcagcc cgcgccattc ggtggcatcg
     1741 ccggcgtcgg tcgacaggct cacgtgacgc cacttggcat ccatcgcgcc gcgtgcctcg
     1801 tgcacctgtc ccgcgatatg caccgcgtcg ctgccgagca gcaaacgcag aggcggttcg
     1861 tccagtcccg ctatgccgag gatcgcttgc gccgctttcg ccggatcgcc gacgggccga
     1921 tgcgacgcgc ggtagtcgag caagggtgca atgctcgcgg catagtccgg gccgggggga
     1981 tggatggtca tcgacgaacc ggcccaatcc gtgcgaaagc cacccggctc gacgatcgtc
     2041 accttgatcc cgagcgacgc gacttccttc gacaacacct cggagaatcc ctccacggcc
     2101 catttcgccg attgatacgc ggcaaggcca ggcgaaccga cgcgcccgcc tatcgatgaa
     2161 acctggatga tgtggccgct tcgctgggcg cgcaagaccg gcaacgcggc gcgcgtgacg
     2221 ttggcgacgc cgtagaaatt ggtttccatc tgcgcgcgga aatcggcgtc gtcgccttct
     2281 tcgatcgaag cgatattgcc gtaacccgca ttattgacga cgacatccag acggccgaac
     2341 gcctccacgg cctgctgcac ggcggcccgc gccgaagcgg ggtcggtcac atcgagtgtg
     2401 acggcgcgca cgcgctcgcc gtattgctcc acgagcgcgg ccagatcttc gggacggcgc
     2461 gcggtcgcga ccagacgat
//
LOCUS       DATGBK010000393         2565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_259457, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000393 DATGBK010000000
VERSION     DATGBK010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259457"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /gene="dapF"
                     /locus_tag="VKJ77_05705"
     CDS             <1..462
                     /gene="dapF"
                     /locus_tag="VKJ77_05705"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HMC44803.1"
                     /translation="EGADTLWPLDVHGETRWISVISMGNPHAVQIVADVENAPVLTEG
                     PVIEHHARFPNRVNAGFMQIVNRGAVKLRVFERGAGETLACGTGACAAVAAGIRRGLL
                     NSPVQVQTHGGMLTITWDGAHNAAAPLFMAGPATTVFEGQIELDSKLAHAD"
     gene            493..1212
                     /locus_tag="VKJ77_05710"
     CDS             493..1212
                     /locus_tag="VKJ77_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014895733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 family protein"
                     /protein_id="HMC44804.1"
                     /translation="MNEREVADYLIANPDFFAEHAELLGAIRLSNPHGKSAVSLQERQ
                     MQMLRDKNKQIERRLAELLRYGHENDSIAAKFHRWTIRVMSERDPHALPKTIPAGLCE
                     IFEVPQAALRVWDVAEPYAQAEFARTTSEEVRSFTSGLATPYCGPNTGFEAAQWLTSA
                     SSVSVASATTDGVVDTANTTESIALLALRDPSAGPEAPAFGLLVMGSPDPRRFHEGMA
                     TDFLTQIGTLASAALSRLLPH"
     gene            1214..2134
                     /gene="xerC"
                     /locus_tag="VKJ77_05715"
     CDS             1214..2134
                     /gene="xerC"
                     /locus_tag="VKJ77_05715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014895732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HMC44805.1"
                     /translation="MTDDPVTAYLSMLEHERRLSEHTLRGYTHELDELKKLANGRALE
                     SLTATDMRGAVARAHGGGLSARSIAHRLSAWRAFYRWLAEQVEMQANPVATVRAPKRA
                     KSLPKALSVDDANALMEAPQADTPEALRDHAILELFYSSGLRLAELVGLDVHFVQSEG
                     YFSAGWLDLASTEVNVLGKGNRRRSVPVGSKAITALRAWIEVRGQFVKDDPHALFLSV
                     RGNRMSPNVVRERVKRMALLAGVPSNVHPHVLRHSFATHVLQSSGDLRAVQELLGHAS
                     IAATQVYTSLDFQHLARVYDQTHPRAKKRD"
     gene            2331..>2565
                     /locus_tag="VKJ77_05720"
     CDS             2331..>2565
                     /locus_tag="VKJ77_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011204773.1"
                     /note="SAM-dependent;catalyzes the methylation of cytosine
                     at position 1962 of the 23S rRNA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytosine(1962)-C(5))-methyltransferase
                     RlmI"
                     /protein_id="HMC44806.1"
                     /translation="MNTITLKPAKDKSLVRRHPWIYANAIEHVEGKPAPGATVLIRAH
                     DGRFLARASYSPVSQIRARVWSFDESEPIDHAFF"
BASE COUNT          491 a          825 c          791 g          458 t
ORIGIN      
        1 gaaggcgccg acacgctctg gccgctcgac gtgcatggcg aaacgcgctg gatttccgtt
       61 atatccatgg gtaatccgca cgccgtacaa atcgtggccg acgtggaaaa tgcgcctgtg
      121 ttgaccgagg ggccagtcat cgaacatcac gcgcgctttc caaaccgggt caacgcgggc
      181 ttcatgcaga tcgtgaaccg tggtgcggta aagctgcgcg ttttcgaacg tggtgcgggc
      241 gaaacgctgg cgtgtggtac cggcgcatgt gcggcggtcg cggcgggtat ccggcgtggt
      301 ctgctcaact cgccggtgca ggtccagacc cacggcggca tgctgaccat cacctgggat
      361 ggtgcgcaca acgccgcggc cccgctcttc atggccggcc ccgccaccac cgtattcgaa
      421 ggccagatcg agcttgattc caaactcgct cacgccgact gaccgccagg aaccccgatg
      481 ctgcccgata ccatgaacga acgcgaagtc gccgattacc tgatcgccaa tcctgatttc
      541 tttgccgagc acgccgagtt gctcggtgcg atccggctgt ccaatccgca tggcaagtcc
      601 gcggtgtcgc tgcaggagcg ccagatgcaa atgctccgcg acaagaacaa gcagatcgag
      661 cgccggttgg ccgagctcct gcggtacgga catgagaacg acagcattgc cgcgaagttt
      721 catcgatgga caattcgggt catgtccgag cgcgatccgc atgcgctgcc gaaaaccatt
      781 cccgccggcc tgtgtgaaat cttcgaggtg ccgcaagccg cgctgcgcgt gtgggatgtc
      841 gcagagccct acgcgcaagc cgaattcgcc aggaccacga gcgaggaagt ccgctctttc
      901 acgagcggcc tggccacgcc gtattgcggg ccgaacaccg gcttcgaggc ggcccagtgg
      961 ctgacatcgg cgagttcggt ctcggtggca tcggctacaa ctgatggtgt cgtcgatacc
     1021 gccaacacca cggaatccat cgcgctgctc gcgctgcgtg atccgtcggc cggccccgaa
     1081 gcgcccgcgt ttggcttgct ggtcatgggt tcgcccgatc cgcgccgatt ccacgaaggc
     1141 atggccaccg acttccttac gcagatcggc acgcttgcca gcgccgcgct cagccgcctg
     1201 ctgccccact gacatgaccg acgatccggt aaccgcctat ctgtcgatgc tcgagcacga
     1261 gcggcgatta tcggagcaca cgttgcgcgg ttatacgcac gaactcgacg agctgaagaa
     1321 gctggccaat ggccgggcgc tggaatcgct gaccgccacc gacatgcgtg gcgctgtggc
     1381 gcgcgctcac ggcggtgggt tgtcggcgcg ctcgattgcg catcggttat cggcgtggcg
     1441 ggcgttttat cggtggcttg cggaacaggt tgaaatgcag gccaatccgg tcgcgaccgt
     1501 gcgcgcgccg aaacgcgcga agtccttgcc caaggcgctt tccgtcgacg acgccaacgc
     1561 gctgatggaa gcgccccagg ccgatacgcc tgaggcgctg cgggaccacg ccatactcga
     1621 actgttctat tcgtccggct tacggctcgc cgagctggtc gggctggacg tgcatttcgt
     1681 gcaatccgaa ggatattttt cggccggctg gctcgacctc gccagcaccg aagtcaatgt
     1741 gctcggcaag ggaaaccggc ggcggtcggt gcccgtgggc agcaaggcga tcacagcgct
     1801 gcgcgcgtgg attgaagtgc gcgggcaatt tgtgaaagac gatccgcacg cgctgtttct
     1861 gtcggtgcgc ggcaaccgga tgtcgccgaa cgtggtgcgt gagcgcgtga aacgcatggc
     1921 tttgctggcc ggcgtgccgt cgaatgtgca tccgcacgtg ttgcggcatt cgttcgccac
     1981 gcacgtgctg caatccagcg gcgaccttcg ggcggtgcag gaactgctcg gccacgccag
     2041 tatcgcggcc acacaggttt atacgtcact cgatttccag catctggctc gcgtctacga
     2101 ccaaacgcat ccgcgtgcga aaaaacgcga ctaagccacg ggactaagcc agcatggcag
     2161 caagcaacaa gatgccggca cgcgtcgctg cgcccaaaaa cgtggccgac tcacgctgaa
     2221 acccgcgtaa ccgccagatt ctctcgctgc aaatagaaac agaaacaaaa acgcggcccg
     2281 aaacctcccc agcttcccct gtccagtcag cgctttcacc gaagacccta atgaacacca
     2341 ttacgctgaa accggcgaaa gacaagtcgc ttgtgcgccg ccatccgtgg atctatgcca
     2401 acgcgatcga gcatgtggaa ggcaagcccg cgcccggtgc aaccgtgctg atccgcgccc
     2461 acgatggccg gtttctggca cgcgcgtcat acagcccggt ctcgcagatt cgcgctcgtg
     2521 tctggagttt cgacgaaagc gagcccatcg atcacgcgtt tttca
//
LOCUS       DATGBK010000394         2854 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_190066, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000394 DATGBK010000000
VERSION     DATGBK010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190066"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            310..639
                     /locus_tag="VKJ77_05725"
     CDS             310..639
                     /locus_tag="VKJ77_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44807.1"
                     /translation="MISDDAGEFEKAVQGSQLARRRILDWFHIAMKFKTAQRSVFGSK
                     MLASLERGVNGSRNPQLNGGECFLRTVLEQCVGEKSRSFTRERSRLGISRDEIATAPN
                     DAGKRYS"
     gene            1558..1950
                     /locus_tag="VKJ77_05730"
     CDS             1558..1950
                     /locus_tag="VKJ77_05730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44808.1"
                     /translation="MPAQSARELSLAHHLALSACRGDRANRHQINELVRSVYMAYYLQ
                     RMGFGEVPFECYEQAEAALENALAVAEKCAKWVTSEQDAPVIERLLTLHDRQLSEAPM
                     HRVVEAENQLRQFLAGTGASPLVRLKSD"
     gene            complement(2288..2563)
                     /locus_tag="VKJ77_05735"
     CDS             complement(2288..2563)
                     /locus_tag="VKJ77_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HMC44809.1"
                     /translation="MNKQDLIDAVASEVGITKAAAAETIDAFLATVTNAVVKGDVIQL
                     IGFGSFSTGARAARAGRNPKTGEALQIAASKTVKFTAGKAFKDAVNQ"
     gene            complement(2714..>2854)
                     /locus_tag="VKJ77_05740"
     CDS             complement(2714..>2854)
                     /locus_tag="VKJ77_05740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HMC44810.1"
                     /translation="VARDMPIDVVQRILGHASLQTTSIYVHAERQRMLDAAAQYYSED
                     GG"
BASE COUNT          590 a          846 c          850 g          568 t
ORIGIN      
        1 gttgaaggcg gataaaagat cgacgctgac atcgcgcgtg acatcgcgaa gctgccccag
       61 accgttgcag acgtaaaggt tcgggaatcc agccatgtcg cctccgtgag cgtcgactcg
      121 gcgtggctgc ggcattgcga cgccgagaga ggccttggcc gccacgtcaa catcgtcgcc
      181 gggcgagcga cgttaacgga cggtacccca aagttgtacg cctatgtgca caactaagtc
      241 ccctcggctg cagcgcgact cgatcagttc ttcagccgaa acgcagtggc gagtgatgag
      301 cgcgtgaccg tgatcagcga cgacgctggt gaatttgaga aggccgtcca gggcagtcag
      361 ctggctcgca gacggatcct cgattggttc cacatcgcga tgaagttcaa gacggcgcag
      421 cgttccgtgt tcggcagcaa gatgctcgcc tcgctggaac ggggagtgaa cggcagtcga
      481 aatccgcaac taaacggcgg cgagtgtttt ctgcgaacag ttcttgagca atgcgtgggc
      541 gaaaagtctc gcagcttcac acgcgaacgc tcgcgtttgg ggattagccg ggacgagatc
      601 gcgaccgcgc cgaacgatgc ggggaagcgc tactcgtagg aaccagcgtt ttctcatcgc
      661 accacatctc accaacgttg cgcgcgaagt agatagcttg caattccgtg gaaaacgatc
      721 tcgggagatc cgacgtaaat gccggacttt ttgtctcgtc caaaggcgaa tccgaaacga
      781 ttacccgcgc gatgaagcca gcgccgccgt ttagtgccaa acattcaata acgaactctc
      841 ggtattcgaa gtgcatgggc gctcgcaagg tgatcgagga tgctcaaccc gctgcatgga
      901 cttaagcaaa tgctcaacac ttttacccat ttattgggaa ctacgcggcg acagtcgatc
      961 gaaacgctac gtaccaagtg agtgtgttcc accgcacacc gccattgcga ccgcttaaaa
     1021 cgggagacac gttcgcgcct agactttgtt tctcagggag ctcggtatgg acatgggttg
     1081 cgttgctttc caagcttacc tcgccatggc gcttcgcgat cgcccgcgtt ggacgactgc
     1141 ggagctcaac gagacgacgg tcgtattctg ggacggcgaa tgggccaggg gcgcaacctt
     1201 gcacgccgat ggcagcggcc gattggacat gaaattcgac ctcaatgagc gcacctgcaa
     1261 tcgtctacac gcggatcttg tggcgtggtt ggccgctccg cgctactcag tccgacccga
     1321 tgttgagcga tggttgtgag tgcgccccta actcggaggg ccgccctata agccagcgtg
     1381 ccggttcgac ttcgacctcg cgcacccacg acgaccagtg gctagttccg gcgtcgacag
     1441 caagttgccc catatttttc tgaactttgt ttcgatacgc gcatggcagg aacaaaacga
     1501 aaagccaccc gcccgggtgc catccgaaaa ccgctgagca agtcggcgct tttgccgatg
     1561 ccggcacaat cagcacgcga gttgtcgctc gcccatcatc tggcactgtc tgcttgccga
     1621 ggcgaccgcg caaatcggca tcagatcaac gagttggtcc gatcggtgta tatggcttac
     1681 taccttcagc gcatggggtt tggtgaggtg ccctttgagt gttacgaaca ggctgaagcg
     1741 gcgcttgaga acgctctcgc ggtggcggag aaatgcgcca agtgggtcac cagcgagcag
     1801 gacgcgcctg taatcgaacg cttgctaacg ctgcacgacc ggcaattgag cgaggcaccg
     1861 atgcaccggg tggtggaagc cgaaaatcaa ctgcgccaat ttctggccgg caccggcgcg
     1921 tcgccactgg tccgcctgaa atcggactaa cggccggtct ctcttccaat gaacgcgttc
     1981 acttttcagc catgccgcgc acccaacatg tcgactccct cgccctcctc ctgatgaagg
     2041 cacgtcccaa gcgcggcgct caggtgcggt acggcgacag aattgcggag gtgctgggag
     2101 aggcgcgcgg cgagcgcgtc atgatccgct cgctgcacgc agatgggggt cgagcgacgc
     2161 agcgcggtga agtggaaaaa tctaaggttg ctcgacgatc aattgttcta gcgtgaggcc
     2221 gccggtatcg aaaagagctc attgccaccg cctgcgaccc gcgcaggcgg acaccgcgtt
     2281 caacgcccta ctggttcact gcgtccttga acgctttgcc ggccgtaaac ttgacagtct
     2341 ttgacgcggc gatctggagt gcttcgccgg tcttcgggtt gcgacctgca cgggccgcac
     2401 gcgctcccgt gctgaaagac ccgaacccga tcagttgaat cacgtcgccc ttgaccaccg
     2461 cgttcgtcac ggtcgccaaa aatgcgtcga tcgtttcagc tgcggccgct ttcgtgatgc
     2521 ccacttcgct tgccactgcg tcgataagat cctgcttgtt catgtttgtg cgctccattt
     2581 acagcaagtg aaccgacagt ttgtatacgc cagcccgcag gataccgcac gggacatgcc
     2641 tcgtttgcgc gagacagatc tggtatcgcg gcgacaccgc cctgcctctc cattggagtt
     2701 gacgggcagc gggctagccg ccgtcttccg aataatattg tgccgcggca tcaagcatgc
     2761 gctgtcgttc cgcgtggacg tagatcgacg tggtctgcaa cgaggcgtga ccgaggatgc
     2821 gctgaaccac gtcaatgggc atgtcccggg caac
//
LOCUS       DATGBK010000395         2766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_4315, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000395 DATGBK010000000
VERSION     DATGBK010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4315"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VKJ77_05745"
     CDS             complement(<1..299)
                     /locus_tag="VKJ77_05745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019256118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC44811.1"
                     /translation="MPFKPVQSYTRTRIADVVSDQIRALITSGALIPGQRLPAERDLA
                     EQLNVSRPSLREALIRLESDGFIQAAARSGFVVSDVTAPLVSAPLAALLSQHPTA"
     gene            447..1190
                     /locus_tag="VKJ77_05750"
     CDS             447..1190
                     /locus_tag="VKJ77_05750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HMC44812.1"
                     /translation="MKVALFIPCFIDAFYPEVGIATLELLERLGVEVDYPGEQTCCGQ
                     PMANSGAQKEAAGAERVFARNFADYDYVVGPSASCIHHVREHLTAIEQTASVRKVRTS
                     AYELVEFLHDVLKVREFPWAEFPHRVGLHNSCSAIRHLKEVSASEINGAPFSKPRALL
                     EGVKGIEFVAPTRPDECCGFGGTFSVTEEAVSVRMGQDKVRDHVGAGAEYIVSGDMSC
                     LMHQQGCAERLKLDARFIHIAQVLNGARS"
     gene            1187..2596
                     /locus_tag="VKJ77_05755"
     CDS             1187..2596
                     /locus_tag="VKJ77_05755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LUD domain-containing protein"
                     /protein_id="HMC44813.1"
                     /translation="MSDVVKGKSKRLDHAKAAGAFIAKEDHVAFHDKRLWDLRSKRDA
                     QAHGMPEWETLRDLASGIKEHTLSHLADYLDQFITQAESHGVIVHYAATAEEHNEIVY
                     KLMSERGLTTLVKSKSMLTDECKMREYIEPRGITVMETDLGERIQQLDNQDPSHMVVP
                     AVHKLRADVAELFGRTIGTDPKNSDIHYLAESQRMNTRPYFVREKTAGMTGCNFAVAE
                     TGTVVVCTNEGNADLSANVPSLHIASIGIEKLIPRISDLGVFIRMLSRSALGSPITQY
                     TSHLRAPRPASEMHYILVDHGRSERLAMEDFWYSLKCIRCGACMNTCPVYRRSGGLSY
                     GFTYSGPIGAIINPTYDMKRFSSLPFASTLNGSCTNVCPTKVNIHEQIYKWREVIAAN
                     HEVPFVKQEVLKMAGRLLASPTLYRGTVASLGGALKRLPNFVLYNPLNIWGRQRDLPE
                     TPAETFHEWYKKNRKAAKK"
BASE COUNT          599 a          808 c          831 g          528 t
ORIGIN      
        1 ctggccgtgg gatgctggct cagcaacgcg gcaagcggcg cggacacgag cggtgcggtg
       61 acatccgaca cgacgaagcc gctgcgcgcg gcagcctgga taaatccatc cgattccagc
      121 cggatcagcg cttcacgcag cgatgggcgc gagacgttga gttgttccgc gagatcgcgt
      181 tcggcgggca gacgttgtcc ggggatcaat gcgccgcttg tgatcagcgc acggatctgg
      241 tcggagacga catcggcgat gcgcgtgcgg gtgtaggact ggacgggctt aaaaggcatg
      301 agtgcgctga aggtgggtaa caaaacggct cgatattttt cgtagtttga catgaaagat
      361 cgcaaacttt aaagtcttgg tcagaccaag ctgaccaaga acggcgaaat ccttcgtttt
      421 tcaggctccc cacattttcc tatccaatga aagtcgctct gttcattccc tgttttatcg
      481 atgcgttcta tcccgaagtc ggtatcgcga ccctcgaatt gctcgaacgt ctgggcgtgg
      541 aagtggatta tccgggggag caaacctgct gcggccagcc gatggcgaat agcggcgcgc
      601 aaaaggaagc ggccggcgca gagcgggtat tcgcccgaaa tttcgctgat tacgactacg
      661 ttgtcggtcc atcggcgagc tgcattcatc acgtgcgtga gcatctgacc gccatcgagc
      721 agaccgcgtc cgtgcgcaag gtgcgaacga gcgcctacga actcgtcgaa tttctccacg
      781 atgtcctcaa ggtgcgcgaa ttcccgtggg ccgaattccc gcatcgggtc ggcttgcaca
      841 atagctgcag cgcgatccgg catctgaagg aagtgtctgc atcggagatc aatggggcgc
      901 cgttttccaa accccgcgcg ttactcgaag gcgtcaaagg catcgaattc gttgcgccca
      961 cacggcccga cgaatgctgc ggatttggcg gcacgttttc ggtgacggag gaagcagtat
     1021 cggtgaggat ggggcaggac aaggtccgcg atcatgtcgg tgcgggcgcg gaatatatcg
     1081 tctcaggcga tatgtcgtgc ctcatgcatc agcaaggctg cgccgaacgc ctgaaactcg
     1141 atgcccgttt catccatatc gcccaagtcc tgaacggagc acgctcatga gcgacgtcgt
     1201 gaagggaaaa agcaaacgtc tcgatcacgc gaaggcggcg ggcgcgttca tcgccaagga
     1261 agaccacgtc gctttccacg ataaacgcct ctgggacctg cgcagcaaac gcgacgccca
     1321 agcccacggc atgcccgaat gggagacgct gcgcgacctg gcgtcgggga tcaaggagca
     1381 cacgctttca catctcgccg attatctcga ccaattcatt actcaagccg agtcgcacgg
     1441 cgtgatcgtg cattacgcgg caaccgccga ggagcacaac gagatcgtct acaagctgat
     1501 gtccgagcgc ggtctcacca cgctcgtcaa aagcaaatcc atgctcaccg atgaatgcaa
     1561 aatgcgcgag tacatcgagc cgcgcggcat cacggtgatg gaaacggatc tcggcgagcg
     1621 catccagcaa ctggataacc aggacccgag ccacatggtc gtgccggccg tgcataaact
     1681 gcgtgcggat gtggccgagc tttttggccg cacgatcggg accgatccca agaacagcga
     1741 catccactat ctcgccgaaa gccagcgcat gaacacgcgg ccgtacttcg tgcgcgaaaa
     1801 aaccgctgga atgacgggct gcaacttcgc ggttgcagag acgggaacgg tcgtcgtgtg
     1861 cacgaacgag ggcaacgcgg acttgtccgc gaatgtgccg tcgctgcaca ttgcgtcgat
     1921 tggtatcgag aagctgattc ccagaatctc cgatctcggc gtgttcattc gcatgctgtc
     1981 gcgcagcgcg ctcggctcac cgatcacgca atacacctcg catttgcgcg caccccgacc
     2041 ggcctcggag atgcattaca tcctcgtcga tcacggccgt tccgaacgcc tcgcgatgga
     2101 ggatttctgg tattcgctca aatgcatccg ctgcggcgcg tgcatgaata cgtgcccggt
     2161 gtatcggcga agcggtggct tgtcgtacgg ttttacgtac tcggggccga tcggcgcaat
     2221 catcaatcct acttacgata tgaaacgctt cagcagcctg ccatttgcat cgacgcttaa
     2281 cggcagttgc acgaacgtct gtcccacgaa agtcaacatt cacgagcaga tctacaagtg
     2341 gcgcgaagtg atcgcggcga atcatgaagt gccgttcgtg aagcaggaag tgctgaagat
     2401 ggcggggcgc ctgcttgcca gtccgacgct gtatcgaggc acagttgcat cgctgggcgg
     2461 cgcgcttaag cggttgccga acttcgtgct ctataacccg ctgaacatct ggggtcggca
     2521 gcgcgatctg cccgaaacgc ccgctgaaac cttccacgag tggtacaaga aaaatcgcaa
     2581 ggctgccaaa aaatgaccac gcgtgacact tttctcgcca agattcgcgc ggcgcaaccg
     2641 gctggcaggc cgcgtcccga cgtgccgctc ttcgataccc cgcccggtga acgcctcgaa
     2701 cgctttcgca ccgccttggc cgcgatgggc gggacggtcg tcgaaggtga atcgctggac
     2761 acggtg
//
LOCUS       DATGBK010000396         1670 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213020, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000396 DATGBK010000000
VERSION     DATGBK010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213020"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..671)
                     /locus_tag="VKJ77_05760"
     CDS             complement(<1..671)
                     /locus_tag="VKJ77_05760"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acyltransferase"
                     /protein_id="HMC44814.1"
                     /translation="MQKSTTLALLSTSNGLSGSGGSNVADLRRRLPNAAETVTGQHRL
                     RVSWAHSEAELREAQRLRYRVFADEMGAQLKGPAGLDVDAFDAFCDHLLVRDLNTLKV
                     VGTYRVLPPHQAARAGRLYAESEFDVSRLAHLRPKLVELGRSCVHADYRSGGVIMSLW
                     GGLAAYMKQNGYETMLGCASVAMADGGHYAADLYEGLEKEALTSPEYRAFAHTPLPVQ
                     ELRTGA"
     gene            complement(836..1294)
                     /gene="sixA"
                     /locus_tag="VKJ77_05765"
     CDS             complement(836..1294)
                     /gene="sixA"
                     /locus_tag="VKJ77_05765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0101006 - protein histidine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HMC44815.1"
                     /translation="MNLILWRHAEAEDQAASDLVRQLTPRGVKQAQGVAKWLKNRIDD
                     DAVFLVSPATRTIQTMEAFGDRYRVVKELAPGASAQAVLDAAEWPRGVAETVVVVGHQ
                     PTLGRVAASLMTGHEAEWTLKKGGVWWFQQRSRAGDDQVVLRAVTSPDLL"
     gene            1447..1523
                     /locus_tag="VKJ77_05770"
     tRNA            1447..1523
                     /locus_tag="VKJ77_05770"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1481..1483,aa:Pro,seq:tgg)
BASE COUNT          298 a          531 c          474 g          367 t
ORIGIN      
        1 gcgcccgtgc gcagttcctg caccggcaac ggcgtatgcg caaacgccct gtattccggc
       61 gatgtcagcg cttctttttc caacccctcg taaaggtcgg cggcgtagtg gccaccgtcc
      121 gccatcgcga cgctcgcgca acctaacatg gtctcgtagc cgttctgctt catgtacgcg
      181 gccaggccac cccacaaaga catgatcact ccaccgctgc ggtagtccgc atgcacgcac
      241 gagcggccga gttccaccag cttcgggcgt agatgtgcga gacgggagac gtcgaattcg
      301 ctttcggcat atagacgtcc ggcacgcgcc gcctgatgcg ggggcaatac gcgatacgtt
      361 cccaccacct tcaaggtgtt caggtcgcgg accagcaagt ggtcgcaaaa ggcatcgaat
      421 gcgtctacgt ccaggcccgc cgggcccttg agctgtgctc ccatctcatc ggcgaacacg
      481 cggtaccgaa ggcgctgcgc ttcgcgcaat tcagcttcgg aatgtgccca cgatacccgc
      541 agccgatgtt gccctgtcac ggtctccgcc gcgttcggca agcgccggcg gagatcggca
      601 acgttcgagc caccagaccc gctcagtcca ttcgatgtgc tcaataaagc gagtgtcgtc
      661 gatttctgca ttggcaaccc ccaagtggat ttggctgacg tattaccgtt agccgccaat
      721 gtaagtattc cgaatgacgc tcgcatggcg tgactatgac gattcaatga agcgtcaccg
      781 cgaagccaca gttttgccgc ctttggggct gttttggtta ttgcttcagt tttcgctaca
      841 gcaagtcagg actggtcact gcacgcagca cgacttgatc gtcgcccgcg cgggagcgtt
      901 gctggaacca ccagacgccg cctttcttca gggtccattc ggcttcgtgg ccagtcatca
      961 gtgaagccgc gacgcgcccg agtgtcggtt gatgtccgac tacaacaacg gtctccgcaa
     1021 cgccgcgcgg ccactccgcg gcatccagca cggcctgggc gctggcgccc ggcgccagtt
     1081 ccttcaccac gcgataccgg tcaccaaacg cttccatcgt ctggatcgtg cgggtggctg
     1141 gactgacgag aaacacagcg tcgtcgtcga tacggttttt cagccacttc gccacgccct
     1201 gcgcctgttt tacgccgcgc ggcgtcagtt ggcgcacgag atcgctcgcg gcctggtctt
     1261 ctgcttcggc gtggcgccag agaatgaggt tcatcgaatg tctcctttgg gggcttgagg
     1321 tttgcccgcg gttttcaatt tggaccggca aaggccgcga acgtgcagtg acttccggcc
     1381 cgactccaca atccggatag tttcgattgc gcgggtatca gtaaaacgct atcatctcgt
     1441 tcttgtcgga gcgtagcgca gcctggtagc gcatctgatt tgggatcaga gggtcgaagg
     1501 ttcgaatcct ttcgctccga ccacgtttta aatgaagggg tcacgagttt aactcgtgac
     1561 ccctttgccg tttctggcgc tgttgcctct acaggacgca gtgccgcagc cgcccggcgt
     1621 ttccgttctc tcgcaaattc ccgatgtcgt ttaaccttct gcgttcaccc
//
LOCUS       DATGBK010000397         1884 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213029, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000397 DATGBK010000000
VERSION     DATGBK010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213029"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..825
                     /locus_tag="VKJ77_05775"
     CDS             <1..825
                     /locus_tag="VKJ77_05775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013802994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-hydroxylase C-terminal
                     domain-containing protein"
                     /protein_id="HMC44816.1"
                     /translation="MSAPGLKFICRTGFAGRANPEDYPLSNRCDEIDTLLIFDNVLIP
                     WEDVLFYQHTKAATFIRATLHRYSAFAFVQRNLRLADLMIGTALFNARQTGLEKQQAV
                     QEKLSTLAVYRETINAHLTASIACGERSPAGLMMPNQSLLYTGRVQACSRLHEMMHLA
                     RELCGGQICVTPDAASFANPEISDWLDKYYTVNENWVSDDRRKLLAFARDLLNSDYAG
                     HRLTFQLFAQSPPFAHLGAVFRNFDFDSTLGYVQKAANLSDRVVQSSAEPRLKRVM"
     gene            833..1246
                     /locus_tag="VKJ77_05780"
     CDS             833..1246
                     /locus_tag="VKJ77_05780"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006481310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC44817.1"
                     /translation="MSHTRIRKFNTRETYPEQKLDNDLCQAVVANGTVYLRGQIGQDL
                     DTRESVGVGDVAVQTEKAMANIAMLLDEAGSKLEDICKITVYLVDVRYREAVYTVVGK
                     WLKGVYPVSTGLVIAALVRPEWLVEIDVIAVIPNS"
     gene            1260..>1884
                     /locus_tag="VKJ77_05785"
     CDS             1260..>1884
                     /locus_tag="VKJ77_05785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015064837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1028 domain-containing protein"
                     /protein_id="HMC44818.1"
                     /translation="MTFSLAGRCERTGMVGGIVCSSSIAVPSRCLWASPHGVVLSQNV
                     TDPRLGVLGLNLLAQGFGAQSTLRQLQDARPYAEWRQLAVLDADGSREAVTGAKGLGV
                     IATKAGRDCVAAGNLLAHDGIPAAMVEAFEGSHASSLAERLIYSLEAGAAAGGEAGPV
                     RSAGFCVYGRDVWPLAELRVDWSDEPIADLRALWQRYEPQMNDYETRA"
BASE COUNT          350 a          527 c          613 g          394 t
ORIGIN      
        1 atgtccgcgc cggggctcaa gttcatctgc cgaacaggct tcgcgggccg ggcgaatccg
       61 gaggactatc cgctctccaa tcgctgcgat gaaatcgaca cgctgctgat cttcgacaac
      121 gtcctgatcc cgtgggaaga cgtgttgttc tatcagcaca cgaaggccgc tacatttatt
      181 cgcgccacgc tgcatcgcta tagcgcgttc gcgttcgttc agcgcaacct gcgtctggcc
      241 gacctgatga ttggtaccgc actgttcaat gcgcgtcaga cggggctcga aaagcagcag
      301 gccgtgcagg aaaaattgtc gacgctcgcg gtgtatagag agactatcaa tgcccatttg
      361 acggcgtcta ttgcatgcgg cgagcgtagt cctgcggggc tgatgatgcc gaaccagtcg
      421 ctgctttata cgggccgggt gcaagcgtgt tcgcggcttc acgagatgat gcatcttgca
      481 cgcgagttat gcggcggcca gatttgcgtg acgccggatg ctgcgtcgtt tgcgaatccc
      541 gagatcagcg actggctcga caagtactac accgtcaatg aaaactgggt ctccgatgac
      601 cgccgcaagt tgctcgcgtt cgcccgcgac ttgctgaatt ccgactacgc cggacatcgg
      661 ttgacgttcc agttgtttgc ccaatcgccg ccgttcgcgc atctgggcgc cgtgttccgc
      721 aacttcgatt tcgacagtac gcttggctac gtgcagaagg ccgcgaacct gtcggaccgt
      781 gttgttcaat ccagcgcaga gccgcggctc aagcgcgtaa tgtgaggtgt ccatgagcca
      841 tacccgcatc cgcaaattca atactcgcga gacctaccca gagcagaaac tggataatga
      901 cctatgccag gcggtggtcg cgaacggcac ggtgtacttg cgcggccaga ttggccagga
      961 tctggatacg cgcgaatcgg tgggcgtagg tgacgtcgcc gtccaaaccg aaaaagccat
     1021 ggcgaacatt gcgatgctgc tggacgaagc cggcagcaag cttgaggata tctgcaagat
     1081 cacggtctat ctcgtcgatg tccgttatcg cgaggccgtc tatacggtgg tgggcaagtg
     1141 gttgaagggc gtgtatccgg tctctaccgg gctcgtgatt gcagcgctcg tgcggcccga
     1201 gtggttagtc gagatcgatg tgatcgccgt cattccaaat agttgaacgg agtcttccca
     1261 tgacgttttc actggctggc cgatgcgagc gtacaggcat ggttggcggc atcgtgtgca
     1321 gttcgagcat cgcggtcccc agccgttgct tgtgggcgag tccgcacggc gtggtgctga
     1381 gccagaacgt gaccgatccg cgtcttggcg tgcttggcct gaatttgctg gcgcagggat
     1441 tcggtgcgca gagtaccttg cggcagttgc aggatgcacg gccttacgcc gagtggcgac
     1501 agcttgcagt actcgacgcc gacggttcgc gcgaagcggt gaccggggcg aaagggctcg
     1561 gcgttatcgc gacgaaggcg gggcgcgact gcgttgcggc gggcaatctg cttgcgcacg
     1621 atggcatccc ggccgccatg gtcgaagcct tcgaagggtc gcatgcgagt tcgcttgccg
     1681 agcgcctgat ctactccctg gaagcgggtg cggcggcggg cggtgaggcg gggccggtac
     1741 gttcagcggg attttgcgtt tacgggcggg acgtctggcc gcttgcggaa ttgcgggtgg
     1801 actggtccga tgaacccatc gccgacttgc gcgcactttg gcaacgctac gaaccgcaga
     1861 tgaacgacta tgagacgcgt gcaa
//
LOCUS       DATGBK010000398         1519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_259481, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000398 DATGBK010000000
VERSION     DATGBK010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259481"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..>1519
                     /locus_tag="VKJ77_05790"
     CDS             72..>1519
                     /locus_tag="VKJ77_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase family protein"
                     /protein_id="HMC44819.1"
                     /translation="MQRIDAGVIARRYYDPDTTPHAATPETLARYLRTMLDDLVQLAL
                     RNGSAALASHLKASIKQHGSAKLTAVTLRMVEQASTLAAAAPSLDHHVGLWFRPLVTK
                     RLVGEGIDTLGELVDFCNSHGGSWWRSMPRIGPHRARVIVAWLRRHESDLDKRIEADV
                     DTQPLVPAVGLGNVVVIGGSIDAPQLAPFERLAIPTALSGEHGTNRGRDFAFIRAEHD
                     LAAVHAYLNRYRDRPPTLRVYTRELERLVLWLVIVRGVALSSMTVEDCEAYKDFLKNP
                     TPTFVGPKRPRSSGRWRPFTPEGLSAESQAYAVRAIRAAFAWLTTVRYLAGNPWSAVT
                     DPATITREVEVQVERALSADLWITLRAELDARCDGEELGGLTPTEEEARQWRTARAAI
                     LLMGDSGVRRDEAAHARRENLSVAVVTSGGPAKTSAKRLTRSSPKTAASEAASETAPA
                     QTGMTVWALTIVGKRRKQRTVPVSAAAVVALRA"
BASE COUNT          257 a          475 c          527 g          260 t
ORIGIN      
        1 gtgagcagca gctagaactg ccgactccgc gcacctacac gcgcaccgac ttcaccgcgt
       61 tgcgcgcctt cgtgcaacgc atcgatgcag gcgtcatcgc ccgccgttac tacgatccgg
      121 acacgacccc gcacgcggcg acgccggaga cgctcgcgcg ctatctgcgc accatgctcg
      181 atgacctggt gcagctcgcg ttgcgcaacg gctccgccgc gcttgcgtcg cacctgaaag
      241 cgtcgatcaa acagcacggc agtgcgaagc tgacggcggt caccttgcgc atggtcgagc
      301 aggcgtcgac cctggcggcc gcggcgccgt cgctcgatca ccacgtgggt ctgtggttcc
      361 ggccgctggt gaccaaacga ctggtcgggg aggggatcga tacccttggt gagctggttg
      421 acttctgcaa ttcgcacggc ggcagttggt ggcgctcgat gccgcgcatc ggtcctcatc
      481 gtgcgcgtgt gatcgttgcc tggctgcgcc gacacgagag cgatctggac aagcgcatcg
      541 aggcggacgt ggatacccaa ccgctggtgc cggccgtggg tctgggtaat gttgtggtga
      601 tcggcgggtc gattgatgca ccgcagttgg ccccgttcga gcggctcgcg attccaactg
      661 cgctctctgg cgaacatggc accaaccgcg ggcgggattt tgcattcatt cgggcggaac
      721 acgatctggc ggcggtgcac gcgtatttga atcgctatcg cgaccggccc ccgaccctgc
      781 gcgtctacac gcgcgagctt gagcgactgg tgctgtggct cgtgatcgtg cggggcgttg
      841 ccctctcgtc gatgacggtg gaagactgcg aggcgtacaa ggacttcctg aaaaatccga
      901 ctccgacgtt cgtgggtccg aagcggccgc gctcaagcgg ccggtggcga cccttcactc
      961 ccgagggatt gtcggccgag agtcaggcgt acgcggtgcg tgcgattcgg gcagcgttcg
     1021 cgtggctgac gaccgtccgg tatctcgccg gcaacccgtg gagtgcggtg acggatccgg
     1081 cgaccatcac gcgggaggtc gaggtgcaag tcgagcgggc gctgtccgcc gatctgtgga
     1141 taacgctacg ggcagaactc gacgctcggt gtgacggaga agagctcggc ggattgacac
     1201 caaccgagga agaagcgcgc cagtggcgca ccgcgcgggc agcgatttta ttgatgggcg
     1261 actcgggtgt gcggcgcgac gaagcggccc acgctcggcg cgaaaacctg agcgtggccg
     1321 tcgtgacgtc gggcgggcct gccaaaactt ccgccaagcg attgaccagg tcgtccccga
     1381 aaaccgcggc cagtgaggca gcaagtgaga cggcacccgc acaaacaggt atgacagttt
     1441 gggccttgac catcgtcggc aaacgccgca agcagcgcac ggtcccggtg agtgcggccg
     1501 cggtcgtcgc gttgcgtgc
//
LOCUS       DATGBK010000399         1775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213053, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000399 DATGBK010000000
VERSION     DATGBK010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213053"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..464)
                     /locus_tag="VKJ77_05795"
     CDS             complement(<1..464)
                     /locus_tag="VKJ77_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005576 - extracellular region [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HMC44820.1"
                     /translation="MPKSLTKLWLRGLKRLVATQIAPPRAPKTRAPAQPVRAKAKAAK
                     PSAAKPKVSAKPRLTRESRVRPRASAWAAGKWSRSFHSAPPVAGRFVNHLAYALYLPT
                     GASLTDMPLVVMMHGCQQSAEEFAQGTRINLLADRFGFAVLYPEQSKTAHVHR"
     gene            735..1430
                     /locus_tag="VKJ77_05800"
     CDS             735..1430
                     /locus_tag="VKJ77_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HMC44821.1"
                     /translation="MPDLPLSLWLSITSLGSVGVMIPLALAVAAWLALGYPWRYAACW
                     LAVLGAASGLVTLTKIAFMGWGVGVRDLDFTGISGHAMVSSAVLPVALFVACLPGRRW
                     VRAFGVSAGVLIGIVVGVSRILLNAHSVSEVVVGCGLGALAALFFVVFAWRAEPGKLS
                     PAPVAVSLAMVAITLHGISVPTQRWITDIALHLSGREQPYVRARWKAGRYDKPVARPP
                     QHIDVRFSGTSES"
     gene            1624..>1775
                     /locus_tag="VKJ77_05805"
     CDS             1624..>1775
                     /locus_tag="VKJ77_05805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC44822.1"
                     /translation="MFNLKPSLIAAVFTLTLQSAAHADEIVVSAAASLTNAFKAIGDA
                     YEKQHPG"
BASE COUNT          299 a          505 c          556 g          415 t
ORIGIN      
        1 cggtggacgt gtgcggtttt cgattgctcg gggtacagca cggcaaatcc gaagcggtcc
       61 gccaacaaat tgatgcgcgt gccctgcgca aactcttcgg ccgattgctg acagccatgc
      121 atcatcacga ccagcggcat gtcggtgagg gatgcgccgg tcggtagata caacgcgtac
      181 gccaggtgat tcacgaaccg gccggcgact ggcggggccg aatggaacga tcgactccac
      241 tttcccgccg cccatgccga ggcgcgcggc ctcacccgcg attcacgggt gagccgcggc
      301 ttggccgaga ccttcggttt cgccgcactc ggtttggccg ccttcgcctt ggcgcgaaca
      361 ggctgcgccg gagcgcgtgt tttcggcgct cggggcgggg cgatctgcgt cgctacaagg
      421 cgtttcagac ctcgtagcca gagttttgtc aggctttttg gcattagatc agggtctcgc
      481 acagaaaagg tggatcgcca aacccttcgg gaaaggcaaa tgttgtgcag tgcacaatag
      541 catctattcc gggaccgtgc gcgcgccaca gaatttcaca ttgcgtcacg ttgcagtcat
      601 gtagacagtt gatacagtac gttgcaagaa ttttgattcg atccattctt atttttagac
      661 tccctctaaa aaattgagag ggccgcttgg caggtatact gtcggctttt cccagctctg
      721 cagaatcaat cttcatgccc gacttgccgc tttcgctttg gctctctatt acttcgctcg
      781 gcagcgtcgg cgtcatgatt ccgctcgcgc tcgcggtggc cgcatggctg gcgcttggat
      841 atccatggcg ttacgccgcg tgctggcttg ctgtgctcgg cgctgccagt ggactcgtga
      901 cgttgacgaa gatcgcgttc atgggatggg gtgtcggcgt gcgcgacctg gatttcaccg
      961 gtatcagcgg ccatgcgatg gtgtcgtcgg cggtattgcc ggtggcgtta tttgtcgcgt
     1021 gtttgccggg gcggcgctgg gtgcgcgcgt tcggggtgtc agcgggcgtg ctgatcggaa
     1081 tcgtggtcgg cgtgtcgcgg atcttgctga acgcgcattc ggtatcggaa gtggtggttg
     1141 gatgcgggct cggcgcgctc gctgcgctgt tttttgtggt gttcgcgtgg cgcgccgaac
     1201 ccggcaagtt gtcgccggca ccggttgccg tgagtcttgc aatggtggct attacgctgc
     1261 atggaatttc ggtgccaacg cagcgctgga tcaccgatat cgccctgcat ttgtcaggcc
     1321 gcgagcaacc gtatgttcgc gctcgatgga aagcaggacg ctatgacaag cccgttgcac
     1381 ggccgccgca acatatcgat gtgcggtttt cggggacttc ggagtcgtaa gaggctctcg
     1441 ctcgcaccgt ttgaaggggt ggcgccctcg ctcgttgatc tggcgaccgg ttgatggcag
     1501 cttcgggtta gcggtggggg ttcaatgcaa ccgagcactc gccaaaccgt gcggatgaac
     1561 cgcctatcgt tataactcca actatattac gatacgcttt ccgttccatt cgagctgtcc
     1621 atcgtgttca atctcaaacc ctcgctgatc gccgctgtct tcacgctcac gctgcaatcc
     1681 gccgcccacg ccgatgaaat cgtggtctcc gctgcagcaa gcctgaccaa tgcgttcaag
     1741 gccatcggcg atgcctacga gaaacagcat ccggg
//
LOCUS       DATGBK010000400         1576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213063, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000400 DATGBK010000000
VERSION     DATGBK010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213063"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..651
                     /locus_tag="VKJ77_05810"
     CDS             <1..651
                     /locus_tag="VKJ77_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014722969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC44823.1"
                     /translation="PPVQNAHPPLWFGGSSPAAHEIAADHIDTYLTWGEPPAEVEKKL
                     ADIRRRAADKGRKIKFGIRLHVIVRETEQEAWADADRLISKLDDETIQRAQASFAKMD
                     SEGQRRMAALHGGQRDKLEVYPHLWAGVGLVRGGAGTALVGNPEQVAGLMKEYAALGI
                     DTFILSGYPHLEESYRFAELVFPLLPREQKERTSGPLSGPFGEIVGTSYLPRASQS"
     gene            678..1472
                     /gene="ssuC"
                     /locus_tag="VKJ77_05815"
     CDS             678..1472
                     /gene="ssuC"
                     /locus_tag="VKJ77_05815"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter permease
                     SsuC"
                     /protein_id="HMC44824.1"
                     /translation="MNVGPFFRRAGVQAAPWLVPILILIAWELAARTGGLSSRVLPEP
                     LAVVKAAWELIQSGDMWANVKVSAWLALTGFAIGGSIGFVLGLGTGLFKPAEIALDST
                     VQMIRNIPALAMIPLVILWFGIGEEAKLFLVALGVFFPVYTNTYHGIRSVDADLIEMA
                     RSYGLSGFALYRDVILPGALPSILVGVRFAFGLMWVMLIVAETISAQSGIGYMTMNAR
                     EFLQTDVVVVGILLYALLGKLADMLAKSIERATLRWHPAYQKGAKT"
BASE COUNT          277 a          442 c          519 g          338 t
ORIGIN      
        1 ccgcccgtgc agaatgcgca tccgccgctg tggttcggcg gctcgtcgcc ggctgcgcac
       61 gagattgcgg ccgatcacat cgatacctat ctgacctggg gtgaaccgcc cgctgaagtc
      121 gaaaagaagc ttgccgatat ccgtcgccgc gcagccgata aaggccgcaa gatcaagttc
      181 ggcattcgcc tgcatgtgat tgtgcgcgag acggaacagg aagcgtgggc cgacgcggac
      241 aggctcatca gcaagctcga cgatgaaacc atccaacgtg ctcaggcatc gtttgcaaag
      301 atggattcgg aaggccagcg gcgcatggcg gcgttgcatg gcggccagcg cgacaagctc
      361 gaggtctatc cgcatttgtg ggccggtgtc ggcctcgtgc gcggtggtgc gggtacggcg
      421 ctggtcggta acccggagca ggtcgcgggc ttgatgaagg agtacgcggc actcggtatc
      481 gacacgttca tcctgtcggg ctatccgcat cttgaagagt cgtaccggtt cgccgaactc
      541 gtctttccgc tgctgccgcg tgaacagaag gagcgcacgt cgggtccgtt gtcagggccg
      601 ttcggtgaaa ttgtcggcac gtcgtatctg ccgcgcgctt cgcaaagttg attcgcaaag
      661 ttgaacccgg aggtccgatg aacgtgggtc cgttttttcg tcgcgcaggc gtacaagccg
      721 cgccttggct tgtgcccatt ctgatcctga tcgcatggga actggccgcg cgcacgggcg
      781 gtttgtcgtc acgtgtattg cccgaaccct tggccgtggt caaggccgcg tgggagctga
      841 tccagtcggg cgacatgtgg gcgaacgtga aggtcagcgc atggctcgca ctgacgggct
      901 ttgcgatcgg cggcagcatc ggcttcgtgc ttgggcttgg aaccgggctc ttcaagccgg
      961 ccgagatcgc actcgactcg accgtgcaga tgatccgcaa tatccccgcg ctcgccatga
     1021 ttccgctggt gattttgtgg ttcggtatcg gcgaggaagc gaagttgttc ctcgttgcgc
     1081 tgggcgtgtt tttccccgtc tatacgaata cgtatcacgg cattcggtct gttgacgctg
     1141 acctgatcga gatggcacgc agctacggac tctcgggctt tgcgctgtat cgcgacgtga
     1201 ttttgccggg ggcattgcct tcgattcttg tgggcgtgcg cttcgcattt gggttgatgt
     1261 gggtgatgct gattgtggct gagacgatct cggcgcaatc gggaatcggc tatatgacga
     1321 tgaacgcgcg agagttcctg cagaccgatg tggtagtcgt cggcatcctg ctttatgcgc
     1381 tgctcggcaa gctcgccgac atgctcgcga agtcaatcga gcgcgccacg ctgcgctggc
     1441 atcctgcgta tcagaaggga gcaaaaacgt gacatcaagc tacgcatcgt atgcatcggg
     1501 caatgccgtg ctggaaggca acgaaccgga agtcgccgcg cgcgagcgtg caccggttgc
     1561 agttacgccc cgtacg
//
LOCUS       DATGBK010000401         1639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_166827, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000401 DATGBK010000000
VERSION     DATGBK010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166827"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..562)
                     /locus_tag="VKJ77_05820"
     CDS             complement(<1..562)
                     /locus_tag="VKJ77_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013212272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44825.1"
                     /translation="MQTPVAPAIQPSVPLRRGFRRPVSAGRIVLQLVVVLFSIYMLLP
                     IVLLVIGSFGETWTNTVLPTGVTGHWFADLAADTSFRRAFGVSLIVALACCCATAVVG
                     LPLAYALHYRALSGRGLTARLVALLPVGVPGLTLGFGYIAIFSGDTLPWLGSLPLLIA
                     AHTVLTLPYLTQTLLSDLRHLDIERLE"
     gene            738..1622
                     /locus_tag="VKJ77_05825"
     CDS             738..1622
                     /locus_tag="VKJ77_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012339257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44826.1"
                     /translation="MKHHYPNVTELLAFTSAAKHLNFSRAARELGLTPSAVSRQIAAL
                     ETQFGVQLFIRDGRNLVLTPSGSRYLERVAGPLRDIGNASLEMMSAGGPSDLLTIASV
                     PTFTTKWLIPRLPGFLSSTSGVTISFARHLAHGDAFPLDLDAAIRYGDGTWDGVVCDY
                     IDGRRFLLVCAPDYQSRRPLRCLQDAADAARLLHGQAGRVWGQWAEFHGVFNMNALAG
                     PRFEQYSVLIQAAQAGLGLALVPEFLVRDNLATGKLVEPISAPIDVEQGHYLCYFPER
                     IETRPALKHFREWVLSQV"
BASE COUNT          338 a          456 c          538 g          307 t
ORIGIN      
        1 cttcgaggcg ttctatatcg aggtggcgca gatcgcttag cagcgtctgt gtcaggtaag
       61 gcagcgtaag caccgtgtga gcggcaatca gcagcggcag ggagccgagc cagggcagcg
      121 tgtcgccgct aaagatggcg atgtaaccga aacctaacgt gagcccaggc acgcccacgg
      181 gcagcagcgc aacgagccgc gcggtcaaac cgcgcccgga aagcgcgcga tagtgcaggg
      241 cataagcgag cggcaggccc acaactgcgg tcgcgcagca acaggccagc gcgactatca
      301 ggctcacgcc gaaggcgcgc cggaagctgg tgtcggcggc gagatcggca aaccagtgcc
      361 ctgtgacgcc ggtcggaaga accgtgtttg tccacgtttc gccgaaggag ccaatcacca
      421 aaagcacgat cggcagcagc atatagatcg aaaaaagcac gacgacgagc tgcagaacaa
      481 tgcgtccggc cgatacagga cgccggaagc cgcgacgaag gggaacgctt ggctggatag
      541 ccggtgcgac gggagtttgc atgggagcac ttgtctgaaa gcggatcgaa gccgatgccc
      601 catgaatcaa cgggctgagg tttcggattg cttgcaagtg tgcagagacg acatggcatc
      661 gtcatgaaaa aaacgtacaa agctggcact gcgctgtgcg catccggaac atatcgacgc
      721 aaaccgctgg gccgccgatg aaacatcact acccgaacgt cacggaacta cttgctttca
      781 ccagtgccgc caagcatttg aatttctcgc gggccgcgcg tgaactgggc ctgacgccta
      841 gtgcagtcag ccggcagatt gccgcgctgg agacgcagtt cggcgtgcag cttttcattc
      901 gcgacggccg caatctcgtg ttgactccat cgggcagccg ttatctcgag cgggttgccg
      961 gccctttgcg cgacatcggc aacgcatcgc tggaaatgat gagtgcgggc ggaccgagtg
     1021 atctgttgac tatcgcgagc gtgccgactt tcacgacgaa atggctgatt ccgcgattgc
     1081 ccggtttcct gtccagcact tcaggcgtca cgatcagttt cgctcgtcac ctggcccatg
     1141 gcgacgcgtt cccgctggat cttgatgcgg caattcgcta tggcgacggc acgtgggatg
     1201 gggtggtgtg tgattacatc gatggccgca ggtttttgct ggtgtgcgcg cccgactatc
     1261 agtcgcggcg tccgctgcgc tgcctgcagg acgccgccga cgctgcgcgg ttgttgcatg
     1321 ggcaagccgg gcgggtgtgg gggcaatggg cggaattcca tggcgtgttc aacatgaacg
     1381 cgctggcggg cccaaggttc gagcagtatt cggtgctgat tcaggcagcg caggcggggc
     1441 tcgggcttgc actggtacct gagtttctcg tccgcgacaa ccttgctaca ggcaaactgg
     1501 tggaaccgat atcggcgcct atcgatgtcg agcaaggaca ttatctttgc tattttccgg
     1561 agcggattga gacccggccg gctttgaagc attttcgcga atgggtgttg tcgcaggttt
     1621 gaagaagtgc cggtccaag
//
LOCUS       DATGBK010000402         1624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213091, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000402 DATGBK010000000
VERSION     DATGBK010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213091"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1624
                     /locus_tag="VKJ77_05830"
     CDS             <1..>1624
                     /locus_tag="VKJ77_05830"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HMC44827.1"
                     /translation="AEARALHPKARATLDEWQTRGWVALETGDVPEQDIALAPGVERA
                     ALHARDALLPQLTAEQSDAVDAITGADGFAAFLLHGVTGSGKTEVYLHALADLLGSRP
                     DAQALVLVPEINLTPQFEAAFRTRFAALPEGAIVTMHSGLAEGERARNWLAAHTGRAR
                     LVLGTRLAILASLPKLALIVVDEEHDPAYKQQEGLRYSARDLAVYRANKLEIPVVLGS
                     ATPSLESWWQAEQGRYTKLTLTRRAVATAVLPSVRLIDLEEERQRGRASVEGLSGPLI
                     AAMKTRLERGEQSLVFLNRRGYAPILSCDACGWVAGCPRCSAYVVLHKPERTLRCHHC
                     GWESRIPKSCPDCGNVDIAPMGRGTQRVEETLATAVPGARVLRIDADSTRRKGSAQAL
                     FSDVHAGEVDILVGTQMIAKGHDFQRVTLVGVLNADTALFSHDFRASERLFAQLMQVS
                     GRAGRAGMPGEVMIQTRYARHALYHALARHDYVGFANSTLAERRDAHLPPFVYQAMLR
                     AEGRTLEAALDFLGAAAAEFAALAGAERVTVYD"
BASE COUNT          271 a          508 c          557 g          288 t
ORIGIN      
        1 gccgaggctc gcgcgctgca tccgaaagcg cgtgcaacgc tcgatgaatg gcaaacgcgt
       61 ggatgggtcg cgctggaaac cggtgatgtg ccggagcagg acatcgcgct cgcgccaggg
      121 gttgaaaggg ccgcgctgca cgcacgcgac gcgcttttgc cgcaattgac cgccgagcaa
      181 tccgatgccg tcgatgcgat aaccggcgcg gacggtttcg ccgcgttctt gctgcacggc
      241 gtgaccggga gcggcaaaac cgaggtctat ctccacgcct tggccgattt gcttggttcg
      301 cgccccgatg cgcaagcgct cgtgctcgtc ccggaaatca atctcacgcc gcaattcgaa
      361 gccgctttcc gcacgcgttt cgccgcgctg ccggagggcg ccatcgtgac gatgcatagc
      421 gggctggccg aaggcgaacg cgcccgcaac tggctcgcgg cgcacacggg ccgcgctcgg
      481 ctcgtgctgg ggacgcggct ggcgatcctg gcgtcgttgc cgaagctggc gctgattgtt
      541 gtcgatgaag aacacgatcc cgcctacaag caacaggaag gtttgcgcta ttcggcgcgt
      601 gatctggcgg tttatcgcgc gaacaaactg gagattccgg ttgtgctcgg gtcggcgacg
      661 ccatcgcttg aaagctggtg gcaggctgag caggggcgat acaccaagct cacactcact
      721 cgtcgggccg tggcgacggc ggttttgccg agtgtccggc tgatcgacct ggaagaggag
      781 cggcagcgcg gacgggcgtc ggtggagggg ttgtcgggac cgctcatcgc cgcaatgaaa
      841 acgcgcctcg aacgcggcga gcaaagcctc gtgttcctca accggcgcgg atacgcaccc
      901 attctttcgt gtgacgcctg cggctgggtc gccggctgcc cgcgatgcag cgcctatgtt
      961 gtgctccaca agcccgaacg cacgttgcgt tgccaccatt gcggctggga atcgcggatt
     1021 cccaagtctt gcccggactg cggcaatgta gacatcgcgc caatgggccg cggcacgcag
     1081 cgcgtggaag aaacgctcgc gacggctgtg cccggggcga gggttttacg tatcgatgcc
     1141 gacagcacgc ggcgcaaggg cagcgcacaa gcccttttct ccgatgtcca cgcgggcgag
     1201 gtcgatatcc tcgtcggcac gcagatgatt gcgaaggggc acgactttca gcgcgtgacg
     1261 ctggttggcg ttctcaatgc cgataccgcg cttttttccc acgatttccg ggcgagcgag
     1321 cggctttttg cccagttgat gcaggtgagc ggacgggcgg ggcgcgccgg catgccgggc
     1381 gaagtgatga tccagacgcg ctacgcacgg cacgcgcttt atcacgcgct ggcccggcac
     1441 gattacgtcg ggtttgccaa ttccacgctg gccgagcgcc gcgacgcgca tttaccgccg
     1501 ttcgtctacc aagcgatgct tcgcgccgaa gggcggacgc tcgaggctgc gctagacttt
     1561 ctgggcgctg cggcagcaga gttcgccgcg ctggccggcg cggaacgcgt gaccgtctac
     1621 gacg
//
LOCUS       DATGBK010000403         4065 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_166859, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000403 DATGBK010000000
VERSION     DATGBK010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4065
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166859"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..663)
                     /locus_tag="VKJ77_05835"
     CDS             complement(<1..663)
                     /locus_tag="VKJ77_05835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HMC44828.1"
                     /translation="MPFSTMPRLGFVGAGRLARCLAAVWSRAGYPITAIASRSAASAH
                     EFAGELPECLVAADASAVAKHADILFLTVPDDSIGATANAFRLDLPRGDAKAVVHCSG
                     ATSVDVLAAAQAQGADIGGFHPLFLFGGLPSDQTPIAGCSVTIEASGPLHDTLTALVQ
                     ALGCHPLSIPPGGRLLYHAAAHYAASFALCSLSETVTLWKELGFAEDDALRAVLPMLA
                     GTI"
     gene            883..1044
                     /locus_tag="VKJ77_05840"
     CDS             883..1044
                     /locus_tag="VKJ77_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44829.1"
                     /translation="MSIFAYRKHLRFLSQTHRRQWWDQRKRLTPRVRISGAYVPPSVT
                     REFAYVKVG"
     gene            1441..1722
                     /locus_tag="VKJ77_05845"
     CDS             1441..1722
                     /locus_tag="VKJ77_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44830.1"
                     /translation="MKKIVQILAAAALGVGLVSAAQAHVSVGIGIGVPAYPVYAAPPP
                     PVYYAPAPVVVGGYYGGGPYWRGHYRGGYGYGYHGGYRGYHGGYGGWRY"
     gene            1949..2914
                     /locus_tag="VKJ77_05850"
     CDS             1949..2914
                     /locus_tag="VKJ77_05850"
                     /EC_number="4.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threo-3-hydroxy-L-aspartate ammonia-lyase"
                     /protein_id="HMC44831.1"
                     /translation="MSILPAPTYADVADAAERIAGAAHRTPVMTSRTADALTGANLFF
                     KCENFQRMGAFKFRGAFNAISHFSESQRQAGVLTYSSGNHAQAIALSARIAGIKATII
                     MPEDAPAAKMEATRGYGGEVITYDRYTENREEIGARLAQERGMTLIPPYDHPHVIAGQ
                     GTSAKELIEETGPLDYLFVCLGGGGLLAGCALAAAELSPSCTVIGVEPEAGNDAQQSL
                     ERGEIVHIEVPRTIADGAASTHVGEYNFPILKRYVDRVVTVSDDQLVQTMKFFAQRMK
                     MVVEPTGCLAAAAVLQNIVPVKGKRVGVLVSGGNVDLARFAQFLA"
     gene            complement(2935..3612)
                     /locus_tag="VKJ77_05855"
     CDS             complement(2935..3612)
                     /locus_tag="VKJ77_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HMC44832.1"
                     /translation="MHVLPLLSDGFFLSLSLCLDIGIANVAIISLTLSHGFKPGMMLG
                     LGTCFGDLVYAALALAGMAALLQFDTVRWVVWIGGAIVLLFLTFKMAREALFPASAPP
                     VAGEPDLIATPRPSHLRSFMRGTLLAVSSPSAILWFAAVGGALIAKAGATGRLSASVF
                     LIGFFCGGIGWTLFICTLASHGRKRAGTALLRACHVLSAVLFAYFAYSVIVNGYHDLI
                     LNGAQTL"
     gene            complement(3729..>4065)
                     /locus_tag="VKJ77_05860"
     CDS             complement(3729..>4065)
                     /locus_tag="VKJ77_05860"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HMC44833.1"
                     /translation="TYPELVAGDGRFCTALMQAFDGDLVGKVGADASYAIGVRATGTR
                     GSLGIAVKVEDGNTAVLYAIVTHVLAQLDIGQETQRAKLAAYRNPPMRNTMGIETGRL
                     VVTVPLECV"
BASE COUNT          799 a         1189 c         1277 g          800 t
ORIGIN      
        1 gatggtgccg gcgagcatcg gcaggactgc gcgcaatgcg tcgtcctcgg cgaaccccag
       61 ttccttccag agcgttaccg tctccgacag cgagcacagc gcaaagctgg ccgcgtagtg
      121 cgcggcagcg tggtagagca ggcgcccgcc cggcgggatg gacaacggat ggcagcccag
      181 cgcctggacc aacgccgtca gtgtgtcgtg caaaggcccg ctcgcttcga tcgtgactga
      241 acagcctgca atgggcgtct gatcgctcgg caggccgcca aacaggaaca acggatggaa
      301 tccgccgatg tctgcaccct gcgcctgggc agcagcgagg acatcgacgg acgtggcgcc
      361 gctgcaatgc acgaccgcct ttgcgtcgcc acgaggcaga tctagccgaa aagcgttcgc
      421 cgtcgcaccg atggagtcgt cgggaacggt taaaaatagg atatcggcgt gtttcgcaac
      481 cgcgctggcg tcggcggcga ctagacattc cggcaattcg cccgcgaatt cgtgtgccga
      541 tgccgccgat cggctcgcta tcgcggtgat tgggtagccc gcgcgcgacc agacggctgc
      601 caggcagcgc gcgagacgcc ccgcgccgac gaagcccaaa cggggcatcg ttgaaaaagg
      661 catggttgtt gctccatagg atgtgttgcg atgcgcggat tcgcgttcgc agcggacgat
      721 gaagtatcgc gcaacggcgt tggcgccata aaaatggcgc gagatgccgc cgccaatggt
      781 tttgcgaggc tcgagcaaac ttgcgttccg ggcctgaaca gtcagggttg gtcttttggc
      841 cgatgtgcgc cagtgcttgt tttgcaacgt ttgggggtcg ccatgagtat ttttgcgtat
      901 cggaaacacc tgcgttttct cagccagaca catcggcgcc agtggtggga tcagcggaaa
      961 cggctcacgc cacgggtcag gatcagcggg gcatacgtgc caccgagtgt cacccgcgaa
     1021 ttcgcctacg tgaaggtggg ctgagcgggt gagttgagcg ccgttttgcc tgaaaagctg
     1081 caccgtttga agatgccccg ctcgacgctt tccggtcggc ggggttttcc attttttgag
     1141 cggtataagc aaagtgtaat gaatcattac tttggtgaca ttcggcatag cgccccgaac
     1201 cgcgcagccg aacgacgaat tgctcagcaa acccttaatc catctcgtta agcctttgca
     1261 ccaaggccag cgcggctgtc tgtcagcttg aaattcggca gacaaaaccc atttttagga
     1321 ctgtagatat tgcaatttgc aacaaatgct taaggtggaa ttcagggttt ttagctacat
     1381 tgaatgcata tcgttgcggt aaccggtcat gtgtgcagga ccgcggcgcg gagaataaaa
     1441 gtgaaaaaga tcgtccagat tctggctgcc gctgcgcttg gcgtaggcct tgtgagcgcc
     1501 gcgcaggcgc acgtttcggt gggtattggc attggggtgc cggcttatcc cgtgtatgcc
     1561 gctcccccgc cgcccgtgta ttacgcaccg gcgcccgtgg tggtgggcgg gtattacggt
     1621 ggtggtccgt actggcgcgg tcattatcgt ggcggttacg ggtacggata ccatggcgga
     1681 tatcgcggtt accacggtgg ttatggcggc tggcgctatt gaaattccac gcatgaccgg
     1741 atcggctaac tgagtatttg actattggat tgcctgcaga acagcgcaac gctggcctag
     1801 agccgggttg cgctgttttg ttttgcaccg ggggtttttc ttgatcggcg ctcgggttag
     1861 ccggccttgt tggtcattaa gccagctttc caaacgctcc acgatgctgg gacaatggag
     1921 gttcctcaac cgccgccctt gagttccgat gtcaatcctt cccgcaccta cctacgccga
     1981 cgtcgccgac gccgcagaac gtattgccgg cgctgcgcat cgcacgcccg tgatgacttc
     2041 ccgcaccgcc gacgcgctca ctggcgcgaa cctgttcttc aagtgcgaga acttccagcg
     2101 catgggcgct ttcaagtttc ggggtgcgtt caacgcgatc tcgcatttct ccgagtccca
     2161 gcgccaggcc ggcgtcctga cttattcatc gggcaatcac gcgcaggcca tcgcgctgtc
     2221 ggcgcgcatc gccggtatca aggcaaccat catcatgccg gaggacgcgc cggccgcgaa
     2281 gatggaagcc acgcggggtt acggcggcga agtgattacg tacgaccggt acaccgagaa
     2341 tcgcgaggag attggtgcga ggctcgcgca agagcgtggc atgacgttga ttccgcccta
     2401 cgaccatccg catgtgatcg cggggcaggg gacgtcggcg aaagagctca tcgaagaaac
     2461 cgggccgctg gattatctgt ttgtgtgcct gggtggcgga ggcttgctcg ccgggtgcgc
     2521 gctggcggcg gccgaactga gcccgtcatg cacggtgatc ggcgtggagc cggaggcggg
     2581 caacgacgcg cagcaatcgc tcgaacgcgg cgagatcgtc catatagaag tgccgcgcac
     2641 gattgccgac ggcgctgcat ccacgcacgt gggtgaatac aacttcccga ttctgaagcg
     2701 ctacgtggac cgggtcgtca ccgtcagtga cgaccagctc gtgcagacca tgaaattctt
     2761 cgcgcagcgc atgaagatgg tggtcgagcc aacgggttgt ctggctgcgg ccgccgtgct
     2821 gcagaacatc gtgccggtga agggcaagag agtgggcgtg ctggtcagcg gcggcaatgt
     2881 cgacctggcg cgattcgctc aattcctggc ttgatgctgc gcaacgtcct gacctcacaa
     2941 cgtctgcgcg ccgttcagga tcaggtcgtg ataaccgttg acgatcacgc tgtatgcgaa
     3001 gtacgcgaac agcaccgccg ataaaacgtg gcaagcgcgc agcaacgccg tccctgcgcg
     3061 tttgcggccg tggctggcga gcgtgcaaat aaagagcgtc cagccgatcc cgccgcaaaa
     3121 gaagccgatg agaaacaccg atgcgcttag ccggcccgtt gcgccggctt tcgcgatcag
     3181 tgcgccgccc acggcggcga accagaggat cgcgctgggt gacgacacag cgagcagggt
     3241 gccgcgcatg aagctgcgca ggtgtgaggg cctcggcgtg gcgatgagat cgggctcccc
     3301 cgcaaccggc ggcgccgatg ccggaaatag cgcttcacgc gccattttga aggtcaggaa
     3361 gagcagcaca atcgcgccgc cgatccatac gacccagcgc acggtatcga actggagtag
     3421 tgcagccatc cccgcgagtg cgagcgctgc gtagacgaga tcgccgaaac aggtgccgag
     3481 tcccagcatc atgcccggct tgaaaccgtg ggaaagcgtc agtgagatga tcgcgacgtt
     3541 tgcgatacca atatccagac acagcgacaa cgacagaaaa aatccatcag acagcaatgg
     3601 caacacgtgc atcccgactt tccttttttg atctttttat attgagcgaa gccggttgtc
     3661 cggcttcgcg tattcatctt gctgcggcgt gcggggcaat cggtcgaacg cctgtgtctg
     3721 cgtactaact aaacgcattc gagcggcact gtcaccacca gccgtcccgt ctctataccc
     3781 atcgtgttgc gcatcggcgg atttctataa gcggcgagtt tcgcgcgctg cgtttcttgg
     3841 ccgatgtcga gttgcgccag aacatgcgtg acgattgcat aaagcacggc cgtgttgccg
     3901 tcttccacct tgaccgcgat gcccagcgac ccccgtgtac cggtagcgcg cacaccgatc
     3961 gcataacttg catcggcgcc tactttaccg accagatcgc cgtcgaaggc ttgcatcaac
     4021 gcggtacaga atctgccgtc gcccgcgacg agttccggat acgtc
//
LOCUS       DATGBK010000404         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_190179, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000404 DATGBK010000000
VERSION     DATGBK010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190179"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1267
                     /locus_tag="VKJ77_05865"
     CDS             <1..1267
                     /locus_tag="VKJ77_05865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC44834.1"
                     /translation="AAALITDHAGFEKLQQVRETLPDLKAAYCVDTTTHENAHSFWDS
                     LRAETDAFTPVDTSCDDPAAIIYTSGTTGKPKGALLAHRALLGHLPGVEMSQGLFPAH
                     ARLMWTPADWAWIGGLFDVLLPAWHHGVTVLARRFEKFDGPAAFDLMARHGVTHTFLP
                     PTALKMMRSVAHPEQWRLSLRAVASGGESLGEELIAWGRTALGVTINEFYGQTECNVV
                     VSSCSAFFEPRPGAIGRSVPGHRVAIVDDEGAELPPGTPGNIAIAAPDPVMFLRYWNN
                     EAATRDKFRGQFLLTGDLGLCDADGFIRFVGRNDDVITSAGYRIGPAPIEDCLLRHPA
                     VSMAAVVGAPDATRTEIVMAFIVLNAGFVADEKLVRELQQHVRTRLAAHEYPREIRFV
                     DALPMTPTGKVMRKELRAGLPGLNNSPKP"
     gene            1570..2196
                     /locus_tag="VKJ77_05870"
     CDS             1570..2196
                     /locus_tag="VKJ77_05870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44835.1"
                     /translation="MKRYLPVRVVLFALALSAALFSSTSFAQASPDAVVKSAVEGTVN
                     AMKADPAARGGDMAKITQLVETRFVPATDFQRTTRIAVGKAWSTATPDQQKALYEQFQ
                     TLLVRTYTSSLSQLRDEDVKFKFDAPTLDAGAKDAVVQSHVYTTGGDNPVRYRLEKTP
                     DGWKIYDIDMMGAWLIQVYQTQFAGQLSKGGVDGLIKFLTAHNARTAE"
     gene            2411..2611
                     /locus_tag="VKJ77_05875"
                     /pseudo
     CDS             2411..2611
                     /locus_tag="VKJ77_05875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012366463.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
BASE COUNT          500 a          773 c          821 g          517 t
ORIGIN      
        1 tgcagcggcg ctgatcaccg accacgccgg tttcgagaag ctgcagcagg ttcgcgagac
       61 gctgccggac ctgaaagcgg cctattgcgt cgataccacc actcacgaaa acgcccactc
      121 cttctgggat tcgctgcgcg cggaaacgga cgctttcacc ccagtcgata cctcctgcga
      181 cgatcccgct gcaatcatct acacctccgg cacgacggga aagcccaaag gagcgctgct
      241 tgcccatcgg gcgttattgg gtcatttacc gggcgtcgag atgtcgcaag gccttttccc
      301 ggcgcacgca cggctgatgt ggacgcccgc cgactgggcg tggataggag gcttgttcga
      361 tgtcttgcta cccgcgtggc atcacggcgt cacggtgctc gcgcggcgct tcgaaaaatt
      421 cgatggcccc gccgccttcg atctgatggc gcgtcacggt gtcacgcaca cgttcctccc
      481 gccgaccgcg ctcaagatga tgcgctcagt ggcgcatccc gagcagtggc gcttgtccct
      541 gcgcgcggta gcgagcggcg gcgaatcgct gggagaagag ttgatcgcgt ggggccgcac
      601 ggcgctcggc gtgaccatca acgagttcta cgggcagacc gagtgcaacg tggtggtgtc
      661 gtcgtgttct gcgtttttcg agccgcgtcc gggggcaatc gggcgcagcg tgccgggaca
      721 tcgcgtggca atcgtcgacg atgaaggcgc ggaacttccg cccggcacac ccggcaatat
      781 cgcgattgcc gcgccggacc cggtcatgtt cctgcgctac tggaacaacg aagcggccac
      841 gcgcgataaa tttcgcggcc agtttctgct gactggcgac ctcggtttat gcgacgccga
      901 tggttttatc cgcttcgtcg gccgtaatga cgacgtgatt accagcgcgg gttatcggat
      961 cggtcctgcg cctattgaag attgtttgct gcgccatccg gctgtcagca tggcggcggt
     1021 tgtgggtgcg ccggacgcga cgcgcacgga gatcgtgatg gcgtttattg tgctgaatgc
     1081 ggggttcgtc gcggacgaaa agcttgtgcg cgagcttcag cagcacgtca ggacgcggct
     1141 ggccgcgcac gaatatccgc gcgaaattcg gtttgtcgac gcgttgccga tgacgccgac
     1201 cggcaaagtg atgcgcaagg aattacgggc ggggttgccg ggtttgaaca attcacccaa
     1261 gccatgagga cccgccgatg attccggata cggcctcgcc actaccgatt tcgccgcagc
     1321 aattgatatc catgcttgag gccatgatgc accgtcagca agtgctcgaa caagccgccg
     1381 ctggcgaggc gcggaggagc cgacgatctg cggcattttt cccttcccca gactcctgcg
     1441 tcagctttga accgacaatc cttcgaatgc gctgaactgt cacggcaggc gcaggtcgat
     1501 atacttagtg cgtttcctaa ctcggcgcgt cgggcttaac gccgccctcc attactcgat
     1561 aacggtcgta tgaaacgcta tttgcctgtc cgtgttgttc tgttcgccct ggccttgtcg
     1621 gcggctctgt tttccagcac gtcgtttgcg caggccagcc ctgatgctgt cgttaaaagc
     1681 gctgtggaag gcactgtcaa cgcgatgaag gctgatcctg ccgcacgtgg cggcgacatg
     1741 gccaagatca cgcaattggt ggagacgcgt ttcgtgccgg caaccgattt ccagcggacc
     1801 acgcggatcg ctgtcggcaa ggcttggagc acggcgacgc ctgaccagca gaaggcgctc
     1861 tacgagcaat tccagacgct gctggtgcgc acctacacgt cgtcgctgtc gcaattacgc
     1921 gatgaagacg tcaagttcaa attcgacgct ccgacgctcg acgcgggcgc gaaagacgct
     1981 gtcgtccagt cgcacgtgta cacgaccggc ggcgataacc cggtgcgtta tcgcctggaa
     2041 aagacgccgg acggctggaa gatctacgac atcgacatga tgggcgcgtg gctgatccag
     2101 gtgtaccaga cgcaattcgc gggtcaattg tccaagggtg gtgtggatgg tttgatcaag
     2161 ttcctgacag cccacaacgc acggacggcg gagtgaggga ggcacggagc taggacccgg
     2221 gttcgcgcat gaagcgtgga tgagcgagcc ggaggcaatt acgtagtatc aggagtagca
     2281 cgaccaacgg gcgcaactgg cgacaagccg ggtgcgcctt tttttgcgcc gctgtgttta
     2341 gcgctcgccg cccctacaaa acctcgcctc atccgccaag atgagcattg acctatgacc
     2401 agggcacgaa atgccaaatc gacgagtatc gaaatccgaa ttcaaagcga aagcatctga
     2461 attctttagg ctggtggagt cgtcggggag agtttgatcg tgaccgaccg tgggcagcca
     2521 acgctggagt tgcggacgta tcaagccgac gcgggggacc cgctcgatct tctacgcggc
     2581 tcgctgttgc gttacgacgc tccaatggac t
//
LOCUS       DATGBK010000405         2303 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_190203, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000405 DATGBK010000000
VERSION     DATGBK010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2303
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190203"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2303)
                     /locus_tag="VKJ77_05880"
     CDS             complement(<1..>2303)
                     /locus_tag="VKJ77_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HMC44836.1"
                     /translation="VPKGTLKTSLGQGTVDMFSRMVTGEIKACWIICTNPVASVANRQ
                     TVIAGLQAAELVIAQDAFLDTETNRYADVLLPGALWAEAEGVMINSERNMTLTQKAIE
                     PPGAALPDWQIIARVACEMGFADAFSYASAQEVFAEITRTSNLKTGYDLRGASHERLR
                     ETSLQWPCAPDVAAGHNSVRNPVRYVNDGVSQTLSQMPDGSRPRLAFPTSTGKAVFFA
                     RPHAEPAEMPDSERPIVLNTGRLQHQWHTMTKTGKVPMLNKLNPAPFVEIHPEDAALL
                     GIKAKDAVEIRSRRGRAVLPAVVTDRVRAGNCFAPMHWNDVFGEELCINAVTNDAVDP
                     LSQQPEFKFCAVALSRVAPKADAANPEMRDDAIRSEHVEPIVADHARPNQELDMSRID
                     ALAALLGIPKTPPPKLSETERIYVDGFMSGLRSAEGRATGGVPTLPLNAPIAPATRLW
                     FDGVLAGLFSRAETPVPTLAAPVAATIAESSVRIARARPKVVLLWASQTGNIESLTER
                     YATQLMESGFEIRTTCMADYAVSDLEKAQYVLLMTSTFGDGDAPDNGESFWTGISAAN
                     APRLDGVRYAVLAFGDRNYDAFCGHGRKLDARLLERGAIRLLERVDCDAEYQPAADAW
                     LERIVARIKEEDAALHAVPADGMIPAVLPGTAPSKTHPAASRLVKNLRLNKQGATKDT
                     RYFSLDTADSGLDYEVGDALGVWPRNCPELVDELIGLSGLSADAPINVAGAGEMRLAD
                     ALGKHYEIARPNQDALAFIAARTRNGPA"
BASE COUNT          432 a          732 c          708 g          431 t
ORIGIN      
        1 gctgggccat tgcgcgtccg ggctgcgatg aacgccagcg cgtcttgatt cgggcgtgct
       61 atttcatagt gcttgccgag cgcgtcggcc aaccgcatct cacccgcgcc cgccacattg
      121 atgggggcat cggcgctaag accactcagg ccgatgagtt catcgaccag ttcggggcag
      181 tttctcggcc acaccccgag cgcatcgccc acctcataat caagacccga gtcagcggta
      241 tccagcgaga aataacgcgt gtccttcgtc gcgccctgct tgttgagccg cagattcttc
      301 accagccgcg acgccgccgg atgggtcttc gagggcgcgg tgccgggcag tacggccgga
      361 atcatgccgt cggccgggac tgcatgcagc gccgcatctt cttccttgat acgcgcgaca
      421 atgcgctcga gccacgcgtc agccgcgggc tggtactcgg catcgcagtc gacccgctcc
      481 agcaaacgta tcgctccgcg ttcgagcaaa cgggcgtcga gcttgcggcc atgaccgcag
      541 aacgcgtcgt agttgcgatc gccaaaagcc agcacggcat aacgcacgcc atccaggcgc
      601 ggagcgttag cggcactgat cccggtccag aaactctcgc cgttatcggg ggcatcgccg
      661 tcgccgaacg tgctcgtcat cagcagaacg tactgcgctt tctccaggtc agacaccgca
      721 tagtcggcca tgcacgtggt ccgtatttcg aagccggact ccatcaactg ggtcgcatat
      781 cgttcggtca gcgattcgat attcccagtc tgagaggccc acagcaacac gacttttggc
      841 cgcgcacgcg caatgcgcac tgaggactcg gcgatagtgg ctgcaaccgg tgcagccaac
      901 gttggcacgg gcgtttccgc gcggctgaag agccccgcga gaacaccatc aaaccaaagc
      961 cgcgtagccg gggcgatggg cgcattcagc ggcaacgtcg gtacgccgcc tgttgcacgg
     1021 ccttccgccg agcgcaggcc gctcatgaaa ccgtcgacgt agatgcgttc ggtctcgcta
     1081 agtttgggcg gcggcgtttt cggaataccg agcagagcgg caagggcatc aatacgggac
     1141 atgtccagtt cctggttcgg acgggcgtga tcggcaacaa tgggctcgac gtgttccgag
     1201 cggatagcat cgtcacgcat ctcaggattc gccgcgtcag ctttaggcgc tacacggctg
     1261 agcgcaacgg cgcagaactt gaattcaggc tgttgcgata gtggatcgac cgcgtcattc
     1321 gtcactgcgt tgatgcagag ttcttcgcca aagacatcgt tccaatgcat gggggcaaaa
     1381 caattgccgg cacgaacccg atccgtgacg accgccggca gcacggcgcg gccgcggcgc
     1441 gaacgaatct cgaccgcatc cttcgccttg atacccagca acgccgcatc ttcgggatga
     1501 atctccacga atggagcggg gttcagcttg ttcagcatgg gcaccttgcc cgtcttggtc
     1561 atggtgtgcc actggtgctg caagcgtccc gtattcagca cgataggccg ttcactgtca
     1621 ggcatttccg caggttccgc atgcgggcga gcgaagaaaa cggccttgcc ggtggaagtg
     1681 ggaaaggcca ggcgcgggcg gctgccgtcc ggcatctggc tgagcgtctg gctcacgccg
     1741 tcgttgacgt agcgcaccgg attgcgaacc gaattgtgac cagcagcaac gtctggcgca
     1801 caaggccatt gcaacgacgt ctcgcgcagg cgctcatggc tcgcgccgcg caagtcgtaa
     1861 cccgtcttga gattcgacgt ccgggtgatc tcggcgaaca cctcttgcgc cgatgcgtaa
     1921 ctgaacgcat cggcgaaacc catttcacag gccacgcgcg cgatgatctg ccagtccggc
     1981 aacgcggcgc ccggcggctc gatggccttc tgcgtgagcg tcatgttgcg ctcggagttg
     2041 atcatcacgc cttcggcctc ggcccatagc gcgcctggca gaaggacatc ggcgtagcga
     2101 ttggtttcgg tatcgaggaa ggcatcttgt gcgatgacta gctccgcggc ctgcaatccc
     2161 gcgatcacgg tctgccggtt cgccacgctt gcaacaggat tggtgcagat gatccagcag
     2221 gccttgatct cgcccgtcac catgcgcgag aacatgtcca cggtgccttg cccgagcgaa
     2281 gtcttgagcg tgcccttcgg gac
//
LOCUS       DATGBK010000406         4680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_190207, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000406 DATGBK010000000
VERSION     DATGBK010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4680
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190207"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..469)
                     /locus_tag="VKJ77_05885"
     CDS             complement(<1..469)
                     /locus_tag="VKJ77_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel protein"
                     /protein_id="HMC44837.1"
                     /translation="MRKIVLVFFLLVLSVLSSTLASAANAAASAVKPAPGSSTVTLTP
                     EQARAALAVLNDPARRSQIEDTLRAVAAAGALSTPVQAASGSSAPLATASAASGASGA
                     ASVLAKSLTSNGLASQISHEAGYWLVELSSGLRRSVTSLLDYGSVMQWWRQRMA"
     gene            690..944
                     /locus_tag="VKJ77_05890"
     CDS             690..944
                     /locus_tag="VKJ77_05890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44838.1"
                     /translation="MLLSATGLVAALLASRRLSTAERANLERAAKPIPPSAAGVSKRV
                     DSVALPDERTTLLPASGDTQLPATPDTPRPHYDRPPARLP"
     gene            complement(1024..1944)
                     /locus_tag="VKJ77_05895"
     CDS             complement(1024..1944)
                     /locus_tag="VKJ77_05895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HMC44839.1"
                     /translation="MKEESPKAIFYALAANFGIAVCKFGAAAFTGSGSMFAEAIHSTA
                     DCGNQLLLLFGLKRSQAPADVLHPLGSGREIYFYSMLVALLLFFVGGAFSVYEGVHRI
                     ARHEVVSNPIVALVVLGISVVLEAFSLAGALREIRKTSGNKSLWRWFRETRESELIVV
                     TGEDVAALAGLAIAFCAVLMTMITGNPVYDAAGSIGVGVLLMVIAYLVAREVKSMIVG
                     ESASPEVRRAIDAHLQARPEIVRVINLITLQWGKQIVVAVQAEMVDYDSGRAMVDAIN
                     VIEADLQRAFPEARWVFFEPDIPRVAEARA"
     gene            complement(2012..3076)
                     /gene="selD"
                     /locus_tag="VKJ77_05900"
     CDS             complement(2012..3076)
                     /gene="selD"
                     /locus_tag="VKJ77_05900"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018435121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HMC44840.1"
                     /translation="MTDIKLNASPSPRLTSLSHGGGCGCKIAPGVLADLLKRSVPMPF
                     FPDLLVGNDTADDAAVYRLNDEQAIVATTDFFMPIVDDPFDFGRIAATNALSDVYAMG
                     GKPILALALVGMPINVLSHEVIAAVLKGGESICAEAGIPVAGGHSIDSVEPIYGLAAI
                     GIVHPKRVKRNASARPGDVLILGKPLGVGVLSAALKKDQLDAAGYAAMIAATTKLNRP
                     GADLAALDAVHALTDVTGFGLLGHTLELSRGAGLTARLRYADLPWLPGVEAFAKAGVV
                     TGASGRNWTAYGHEITLASSLHDVARSLLTDPQTSGGLLVSCAPEAVDEVLAIFRADG
                     FDQAAVIGEMIDGEGRVEVV"
     gene            3301..3729
                     /locus_tag="VKJ77_05905"
     CDS             3301..3729
                     /locus_tag="VKJ77_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44841.1"
                     /translation="MKSLPLVFGLIFCASLCQFSQPGHAQGSPDPSQEDYAYLTRMHV
                     PEPVIRCVAAFDRWVALTPKYDTFIVPDRRVLGAKIDSDTTIFSAGNPIPVDEVIAMR
                     AFAKVRGRSQWTRVDSRCGVRDGRVVGVSLTPNVRPTIVR"
     gene            4036..4272
                     /locus_tag="VKJ77_05910"
     CDS             4036..4272
                     /locus_tag="VKJ77_05910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44842.1"
                     /translation="MLTVKKGLAAASLAVAAAMSLGFTNTASADDHFHPGYVHVDSRG
                     WHGDRYYDGHRYWERREWERHHAPRYYGPPHRYY"
     gene            complement(4376..>4680)
                     /locus_tag="VKJ77_05915"
     CDS             complement(4376..>4680)
                     /locus_tag="VKJ77_05915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003812185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC44843.1"
                     /translation="LRQHFDQPLRVESIARDVHRSVSSLHHHFKAVTAMSPLQYQKQL
                     RLQEARRLMLIDMTDAATAAHRVGYESASQFSREYSRLFGAPPLRDTRKWRETASA"
BASE COUNT          955 a         1486 c         1391 g          848 t
ORIGIN      
        1 ttgccatgcg ctggcgccac cactgcatga ccgagccata gtcgagtagc gaagtaacgg
       61 aacggcgcaa gccgctactg agctccacga gccagtaacc cgcctcatgc gaaatctgcg
      121 atgccagccc gttgctcgtg agcgacttcg ccagcacgct cgccgcgccc gatgcgccac
      181 ttgcagccga ggcggtcgcc agcggcgccg agctgcctga ggcggcctgc acgggcgtgg
      241 agagcgctcc ggcggccgcg acggcgcgaa gtgtgtcctc gatctggctg cggcgtgcgg
      301 ggtcgttgag gaccgccagc gcggcgcgcg cctgttcggg ggtcagcgtg acggtagatg
      361 aaccaggggc tggcttgact gcactggcgg ccgcattcgc ggcagatgca agcgtgctgc
      421 tcagaacgct caggacaaga agaaagaaga cgagaacaat tttgcgcatg ggcgagggtg
      481 aggaactcgg ttagggaaaa ccgccacgga tacgcccggc tgcagcgcga ttgaacctgc
      541 ggtgatcact ctcaagctgg acaaacagga gaagctgaaa tagttcgtgc atcaaacgtc
      601 tgatcaaaac taccggattt gggtatgcat gtccaaacta cgcgaactat tcgatccgcg
      661 cgatcccggc gaatggcccc ggcgcggcca tgttgctgtc ggcgaccgga ctggtggcag
      721 cacttcttgc gtccaggcgg ctctccaccg ccgaacgcgc caaccttgag cgggccgcga
      781 aacctatccc gccctcggct gcgggggtga gcaagcgtgt agacagcgtt gcgctgccgg
      841 acgaacgcac cacgctactt cccgccagtg gcgacacgca gcttcccgca acacccgata
      901 caccgcgacc gcactatgac cggccaccgg ctcgtttgcc gtgatgctga attctccgcg
      961 acagtttctc cgcgacgtcg tgcagtttag tggaaccttt gctggacggc ttatcttgct
     1021 tgcttaagca cgcgcctcag ccacgcgggg aatatccggt tcgaagaaga cccagcgtgc
     1081 ttcgggaaac gcgcgctgca ggtccgcttc gatcacattg attgcatcga ccatcgcacg
     1141 gccgctgtcg tagtccacca tctccgcttg cacggccacc acgatctgct tgccccactg
     1201 cagcgtaatc aggttgatca cgcggacaat ttccgggcgt gcctgcaagt gcgcatcgat
     1261 agcacggcgc acttccggac tcgccgattc cccgacgatc atcgacttca cctcgcgggc
     1321 gaccaggtac gcaatcacca tgagcagcac gccgacacca attgacccgg cagcatcgta
     1381 gaccggattg ccggtgatca tggtcatgag cacggcgcaa aacgcaatgg caaggcccgc
     1441 cagcgcggca acatcttcgc ctgtcaccac gatcaattca gactcgcgcg tctcgcgaaa
     1501 ccatctccag agggacttgt tccccgacgt cttgcggatc tcgcgcaacg cgccggccaa
     1561 ggaaaaagcc tcgagcacga ccgatatccc cagcacgaca agcgcgacaa tcgggttact
     1621 gaccacttca tgccgggcga tccgatgcac gccttcgtac actgaaaacg cgccgccgac
     1681 aaagaacagc agcagcgcga cgagcatgga atagaagtag atctcgcggc ccgagccgag
     1741 cggatgcaac acgtcggcgg gggcctgtga acgcttgagt ccgaacagca acaacagttg
     1801 attgccgcaa tcggcggtgg agtggatggc ttcggcaaac atggagccgg agccggtgaa
     1861 cgcagccgcc ccaaacttgc agacggcaat gccgaagttg gctgcgagtg cgtagaaaat
     1921 agctttcggc gattcttctt tcatcgtgct cctggcggaa gtgggtcagg gacgctctca
     1981 ggacatcagc aacgaacaaa cgaccaacgc gctaaacgac ttccacgcgg ccttcgccgt
     2041 cgatcatttc tccgatcacg gccgcctgat cgaagccgtc cgcgcggaag atggcgagca
     2101 cttcgtcaac cgcctcgggc gcgcacgaca ccagcaagcc gcccgaagtc tgcggatcgg
     2161 tgagcaggct tcgtgccaca tcgtgcaatg acgacgctag cgtgatctcg tgcccgtatg
     2221 cggtccagtt acggcctgat gcccccgtga ccacgcccgc tttcgcgaac gcctctacgc
     2281 cgggcagcca tggcaagtcg gcgtatcgca ggcgtgccgt cagcccggca ccgcggctta
     2341 gctccagcgt gtggcccaac aggccgaagc cggtgacgtc ggtgagcgcg tgcacggcgt
     2401 cgagtgcggc cagatccgcg ccggggcgat tcagcttggt cgtggcggcg atcatcgcgg
     2461 cgtagccggc ggcatcgagt tgatccttct tcagcgccgc cgacaacacg cccacgccta
     2521 gtggcttgcc gaggatcagc acgtcgccag gacgagccga ggcgttacgc ttcacgcgct
     2581 tcggatgcac gataccgatt gccgccaggc catagatagg ctcgacggaa tcaatggaat
     2641 gaccacccgc gacagggatg cccgcttcgg cgcagatcga ctcgccaccc ttcagcacgg
     2701 ccgcgatcac ctcatgcgac aacacgttga tcggcatgcc gacgagcgcg agcgcgagga
     2761 tcggtttgcc gcccatggcg tagacatcgg agagtgcgtt ggttgccgcg atacggccga
     2821 agtcgaacgg gtcatcgacg atcggcatga agaagtcggt ggttgcaaca atcgcctgct
     2881 cgtcgttcaa acgataaacc gccgcgtcgt cggcggtgtc gttgccgacc agcaagtcgg
     2941 ggaagaaagg catgggcacg ctgcgcttca acaggtcggc gagcacgccc ggcgcgatct
     3001 tgcagccaca gccgccaccg tgggacaggc tggtcagtcg gggtgacggg gatgcattca
     3061 gcttgatgtc agtcattcgc ggttatccgg caaggttgcg tatgaccgat attatggtgg
     3121 ttgtcgcgtc cggacgtggc aatcgcgatc tcaccacgca atcctggtga ccacggcgcg
     3181 tagtccgcgt cgatattgaa aggcgtcatg cgagcgctcg cgcggtacac ttcgcgtcac
     3241 ggtccgatgc cgtcattcaa cgttacccat caaccgccct gtgccccgta cctttaccgc
     3301 atgaaatctt tacctcttgt tttcggcttg atcttctgcg cgtcgctatg tcaattcagt
     3361 caacccggtc acgctcaggg atcgcctgac ccctcgcagg aagactacgc ctacctgacc
     3421 cgcatgcacg tccctgaacc ggtgatccgc tgcgtggcag cattcgatcg atgggtggcg
     3481 ctcacgccca agtacgacac gttcatcgtc cccgaccggc gtgtactggg tgcaaagatc
     3541 gacagtgaca ccactatctt cagcgcgggc aatccaatcc ccgtggacga agtgatcgcc
     3601 atgcgcgcct tcgccaaagt ccgcgggagg tcccaatgga cgcgcgttga cagccgctgc
     3661 ggagtgcgtg acggccgcgt ggtcggtgtt tcgctcaccc caaatgtaag gcccacgatc
     3721 gttcggtaac agcgcctgac ggacacgcct tcgtagcctt tcccgaatat ttcaacacac
     3781 acttttcctt acaaacgcaa acggcttgtc atttagctaa tcgctaaatt gatttcacgg
     3841 atttcacttg gagaaaccga tgaaacgatt agcgattcta gccacgctcg cagtactcct
     3901 cggcagcacc ctgggcggtt gcatcgtcgt accggatggc ggcggatatc accatcacga
     3961 ctactacggc cgctattgag cttggcttag ctggataaag cgacgaaccc gaataacagc
     4021 gcgaaggaaa ccaacatgtt gacagtcaaa aaaggcttgg ccgccgcatc gcttgcggtg
     4081 gcggcagcaa tgagtctcgg cttcacgaat accgcgtccg ccgatgacca cttccacccc
     4141 ggctacgttc atgtcgacag ccgcggctgg cacggcgacc ggtactacga cgggcatcgc
     4201 tactgggaac ggcgcgagtg ggaacgtcat cacgcaccgc gttattacgg ccctccgcat
     4261 cgttactatt gatcggtagc acaggcctta aaaaaacagg cgttaaaaac gaaaagccag
     4321 ggacatccct ggcttttcgt tttcggccgc gacaatgcgg cgcttcgaac ctcgatcacg
     4381 cgctggcagt ctcgcgccac ttgcgggtgt ctcgtaacgg cggcgcacca aacaggcggc
     4441 tgtactcgcg gctgaattgc gatgcgctct cgtaccctac gcggtgcgcc gctgtcgctg
     4501 catcggtcat gtcgatcagc atcaggcggc gcgcttcctg aagccgcaac tgcttctggt
     4561 attgcaacgg gctcattgcc gtgaccgcct tgaaatgatg gtgcagcgac gagacgctcc
     4621 tatgcacgtc gcgggcgatc gactccacgc gtaacggctg atcgaagtgc tggcgcagca
//
LOCUS       DATGBK010000407         2176 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213151, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000407 DATGBK010000000
VERSION     DATGBK010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213151"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            337..>2176
                     /locus_tag="VKJ77_05920"
     CDS             337..>2176
                     /locus_tag="VKJ77_05920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009890767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease N-terminal domain-containing
                     protein"
                     /protein_id="HMC44844.1"
                     /translation="MRIDKLTTKFQEALADAQSLAVGNDNQYIEPVHLLSALIAQQDG
                     SARSLLSQAGVQVQALQTALKDAMTRLPQVQGTDGNVQVSRDLAGLLNSADKEAQKLN
                     DTFIASEMYLLAIADDKGEAGRIAKQHGLTRKALEAAINSVRGGAQVNSQDAESQRGA
                     LKKYTVDLTERARAGKLDPVIGRDDEIRRSIQILQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIVNGEVPESLKSKRVLSLDMAALLAGAKYRGEFEERLKSVLSDIAKDEGQTIVF
                     IDEIHTMVGAGKAEGAMDAGNMLKPALSRGELHCIGATTLDEYRKYIEKDAALERRFQ
                     KVLVDEPSVEATIAILRGLKERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAID
                     LIDEAASRVKMEIDSKPEEMDRLDRRLIQLKIEREAVKKEKDEASQKRLQLIEAEIER
                     LGREYSDLEEIWMAEKAAVQGSATLKEEIEKVRADIVRLQREGKLEKVAELQYGKLPG
                     LEAQLKQVTQSETAEQTNPTRPRLLRTQVGAEEIAEVVSRSTGIPVSRMMQGEREKLL
                     QIEGKLHDRVVGQDEAIGAVADAIRRSRAGLSDPNRPYGSFLFLGPT"
BASE COUNT          485 a          606 c          692 g          393 t
ORIGIN      
        1 aactgaagta actgatttgc ctgactgacc ttcctgatac acgcttattc cagcgcggcc
       61 cgcgcctatt cttcgaccta gatcagtcca ccgcggtcgc gatccgttca caatggtctc
      121 atgacgctca cgttcgacgg acgccaatgt acgttgttgc tcccgactcg acgtttttgc
      181 gcatcgtcat gagcgctacc aaccgctatt aaccgcccgg caccatcaac cgcgtcaatc
      241 ggcatttcgc agaaaaatgc ggttttgggc agtggagcgc ttgaaagtgc cggatcacgc
      301 ctcattttga acacatcccg atttggaggt ctcaatatga gaattgacaa gctaaccacg
      361 aagttccagg aagcactggc cgacgcgcag agtctcgccg tcggcaatga caatcaatat
      421 atcgaaccgg ttcacttgct ttccgcgctg attgcgcagc aggacggttc ggcgcgctcg
      481 ctgctctcgc aggccggggt gcaggtccag gcgttgcaaa ccgcgctcaa ggacgccatg
      541 acgcgtctgc cgcaagttca gggcacggac ggaaacgtcc aggtcagccg cgatctcgcc
      601 ggcttgctga acagtgccga caaagaggcg caaaagctca acgacacgtt tatcgcaagc
      661 gagatgtacc tgctcgccat cgccgatgac aagggcgaag ccggtcgtat cgccaagcag
      721 cacggcctca cgcgcaaggc gctcgaagcc gcgatcaatt cggttcgcgg cggtgcccag
      781 gtgaatagcc aggacgctga aagccagcgc ggcgcgctga agaaatacac cgtcgacctg
      841 accgagcgcg cgcgcgccgg caagctcgac ccggtgatcg gccgggacga tgaaattcgc
      901 cgttcaattc agatcttgca acgacgcact aagaacaacc cggtgctgat tggtgagccg
      961 ggcgtgggca agaccgcgat tgtggaaggt ctcgcccagc ggatcgtgaa cggtgaagtg
     1021 ccggaatcgc tcaagagcaa gcgcgtgctg tcgctcgaca tggccgcgtt gttggctggc
     1081 gccaagtatc gcggggaatt cgaagagcgg ctcaaatccg tgttgagcga cattgcgaag
     1141 gacgaaggcc agacgatcgt tttcatcgat gaaatccata ccatggtcgg tgccggcaag
     1201 gccgaaggcg ccatggatgc gggcaatatg ctgaagcccg cgctctcgcg cggcgagctg
     1261 cattgcatcg gcgcgaccac gctcgacgaa tatcgcaagt acatcgaaaa ggacgccgcg
     1321 ctcgagcgcc ggttccagaa ggtgctggtc gatgaaccgt cggtggaagc gaccatcgcg
     1381 atcctgcgcg gcctgaagga aaggtatgag ctgcatcacg gcgtggaaat taccgatccg
     1441 gcgatcgtcg cggcggcgga attgtcgcat cgctatatca cggaccgttt tctccccgat
     1501 aaggccatcg acctgatcga cgaagctgcg tccagggtca agatggaaat cgattcgaag
     1561 cccgaggaga tggatcggct cgatcgccgg ttgatccagt tgaagatcga gcgcgaagcc
     1621 gtcaagaagg aaaaggacga agcatcgcag aagcgcttgc agttgattga ggctgaaatc
     1681 gagcggctgg gtcgggagta ctccgatctc gaggaaatct ggatggcgga gaaagccgcc
     1741 gtgcaaggca gcgcgacgct gaaggaagag atcgagaaag tgcgggcgga tatcgtgcgg
     1801 ttgcagcgcg aaggcaagtt ggagaaggtt gccgaattgc agtacggcaa gctgcccggg
     1861 cttgaagcgc aactgaagca ggtgacgcag tccgagaccg cggagcagac caatcccacg
     1921 cggccgcgtc tgttgcgcac gcaagtgggc gccgaggaaa ttgcggaagt ggtgtcgcgt
     1981 tccacgggca ttcctgtgtc tcggatgatg caaggcgaac gcgagaaact gttgcagatc
     2041 gaaggcaagc tgcatgaccg cgtggtgggt caggatgaag caatcggcgc ggtggccgat
     2101 gctatccgcc gttcgcgcgc ggggttgtcg gatccgaatc gtccgtatgg ttcgttcctg
     2161 ttccttgggc cgacgg
//
LOCUS       DATGBK010000408         2519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_97488, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000408 DATGBK010000000
VERSION     DATGBK010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97488"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2519)
                     /locus_tag="VKJ77_05925"
     CDS             complement(<1..>2519)
                     /locus_tag="VKJ77_05925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HMC44845.1"
                     /translation="LLDYKWYAALAYVRANKLDRIEIESPHARFGIMTAGKAYLDVRQ
                     ALSDLGLDDETCARIGIRLYKVGCVWPLEAQGAHAFAHGLQEILVVEEKRQILEYAIK
                     EELYNWPDAQRPRVFGKFDEKDGAGGEWSVPMGNWLLPAHYELSPAIIAKAIATRLDK
                     FDLPADVRARIATRIAVIEAKEKALARPRVEAERKPWFCSGCPHNTSTNVPEGSRALA
                     GIGCHYMTVWMDRSTSTFSQMGGEGVAWIGQAPFSNDKHVFANLGDGTYFHSGLLAIR
                     AAIASKNNITYKILYNDAVAMTGGQPVDGVLTVPQITHQLAAEGATKIVIVTDEPEKY
                     QANVGLAPGIDVFHRDKLDEVQRALREITGTTILIYDQTCATEKRRRRKRGAYPDPAK
                     RVVINEAVCEGCGDCSVKSNCLSVEPLDTEYGTKRQINQSTCNKDYSCVNGFCPSFVT
                     VEGGQLKKPKVSSISGDAMPPVPTPELPLIDRPYGVLVTGVGGTGVVTIGALLGMASH
                     LEQKGVTVLDVTGLAQKGGAVMSHVQIATHPGDIHATRIAMGEADLVIGCDPIVTASD
                     ECGSRMQPGHTRVVVNSAETPTAEFIKNPNWRFPGASAEADIRTAAGEHVALVDANRF
                     AVALLGDAIYTNPFVLGFAWQRGWVPLRHESLIRAIELNDVQVEKNLAAFEWGRHAAH
                     DLEGVTRLVKAQGRGGISSGSEGGSKIIALHTPKALDTLIEKRIAYLSDYQNEAYAAR
                     YARLVAEVRKAEAALGQSFGDSPYALTEAVAKNLHKLMAYKDEYEVARLYADPAFVER
                     LKGSFEGDWKVKFHLAPPMLSKKDAHGHLIKKQYGPWVLSA"
BASE COUNT          461 a          793 c          728 g          537 t
ORIGIN      
        1 atggcggata agacccacgg gccgtactgc ttcttgatca gatgaccgtg cgcgtccttc
       61 tttgagagca ttggcggcgc gaggtggaat tttactttcc agtcgccttc gaagctgccc
      121 ttcagccgtt ccacgaacgc cggatcggcg taaaggcgcg cgacttcata ctcgtccttg
      181 tacgccatca gtttgtgcag atttttcgca acagcttcgg tcaatgcgta cgggctgtca
      241 ccgaacgatt gtccgagcgc cgcttccgct ttacgcactt cagccacgag ccgggcgtaa
      301 cgcgcggcgt acgcttcgtt ctggtagtcg gagagataag cgatgcgctt ttcaatcagc
      361 gtgtccagtg ccttcggcgt atgcagcgcg atgatcttgc tgccaccttc cgatccagac
      421 gatatcccgc cacgaccttg cgccttgacc agccgcgtga cgccctcaag atcgtgagct
      481 gcgtggcgac cccattcgaa tgccgcgaga ttcttttcga cctgcacgtc attcaattcg
      541 atggcgcgaa tcaacgattc atgccgcaac ggcacccagc cgcgttgcca ggcgaaaccc
      601 agcacgaacg gattggtgta aatggcatcg ccgagtagag cgaccgcgaa gcgatttgca
      661 tcgacgagag caacgtgctc gcccgcggcc gtgcggatat cggcttccgc gctcgcgccc
      721 gggaagcgcc agttcgggtt cttgatgaac tcggcagtcg gcgtttcggc gctgttcacc
      781 accacgcgcg tgtggccagg ttgcatgcgc gaaccgcatt cgtcgctggc cgtgacaatc
      841 ggatcgcagc cgatgaccag atccgcttcg cccattgcga tgcgcgtggc gtggatatcg
      901 ccgggatgcg tggcgatctg cacatggctc atcaccgcgc cacctttctg cgcgaggccg
      961 gtgacgtcca gcacggtcac gcctttttgc tcgagatgcg atgccatgcc gagcaacgcg
     1021 ccaatcgtca caacacccgt gccgcccacg ccggtgacta atacgccata cggacggtcg
     1081 attaacggca gctcgggcgt cggcacggga ggcattgcat cgccggaaat actcgatacc
     1141 ttcggtttct tcaactgccc gccttcaacc gtgacgaaac tcgggcagaa accgttcacg
     1201 cacgagtagt ccttgttgca ggtcgactgg ttgatctggc gttttgtgcc gtattcagtg
     1261 tcgagtggtt cgaccgacag gcaattcgat ttcaccgagc aatcgccgca gccttcgcag
     1321 acggcttcat tgatgaccac gcgcttcgct ggatcggggt acgcaccgcg tttcctgcgc
     1381 cgacgttttt ccgttgcgca cgtctggtcg taaatcagga tcgtggtgcc ggtaatctca
     1441 cgtagcgcgc gctgaacttc atcgagcttg tcgcgatgaa atacatcgat acccggcgcc
     1501 agccccacat tcgcctgata tttctcgggt tcatcggtga cgatcacgat cttcgtcgcg
     1561 ccttcggccg cgagttgatg cgtgatctgc ggcacggtga gcacgccgtc tacaggctgc
     1621 ccgccggtca tcgcgacggc gtcgttgtag aggatcttgt aggtgatgtt gttcttcgac
     1681 gcgatcgctg cgcggattgc gagcagcccc gagtggaagt acgtgccatc gccgagattg
     1741 gcgaacacgt gtttgtcgtt ggagaacggc gcctggccga tccacgcgac gccttcaccg
     1801 cccatctggc tgaacgtgct cgtgctgcgg tccatccaga cggtcatgta atggcaaccg
     1861 ataccggcaa gcgcgcgcga accttcaggc acgttcgtcg atgtattgtg cggacagccc
     1921 gagcagaacc acggcttgcg ctcagcttcg acgcgcggcc gtgccagcgc tttttccttc
     1981 gcttcgatca ccgcgatacg cgtggcgata cgcgcgcgga catcggcggg gagatcgaac
     2041 ttgtcgagcc gcgtggcaat cgccttcgcg ataatcgccg gcgagagctc gtagtgcgcc
     2101 ggtaaaagcc agttgcccat cggcacggac cattcgccgc ctgcgccatc cttctcgtcg
     2161 aacttgccga acacgcgcgg ccgttgcgca tcgggccagt tataaagctc ttccttgatc
     2221 gcgtactcca ggatctggcg cttttcttcc acgaccagaa tctcctgcag cccgtgtgca
     2281 aatgcatgcg caccctgcgc ttctagcggc cacacgcaac caaccttgta caaacgaatg
     2341 ccgatgcgtg cgcaggtttc atcgtcgaga ccgagatcgc tcaaagcctg acgcacatcg
     2401 agataagcct tgcccgcggt catgatccca aagcgcgcat gcggcgattc aatctcgatc
     2461 cggtccagct tgttcgcgcg tacgtaggca agcgccgcgt accacttgta gtcgagcag
//
LOCUS       DATGBK010000409         2703 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_74337, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000409 DATGBK010000000
VERSION     DATGBK010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74337"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..814
                     /locus_tag="VKJ77_05930"
     CDS             <1..814
                     /locus_tag="VKJ77_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019923358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44846.1"
                     /translation="RRARAVGRVMLGLTIANIFGVPLATWLGQWLGWRADFLLVGTLG
                     ILTMIGVRIFLPPIHAGGATPRRELGVFRRLQVWLTLSVIAVGFGGLFAVYTYITPTL
                     LNVTHVAPWRVPLLLGALGVGMTAGSLIGGVLADKSRLWTIFGMLIWNAAALAAFAYS
                     SANEWTATLNLFAMGLGIAVVPAVQTRLMDVAGDAQTVAAALNHSAFNIANALGAWAG
                     GIVVAMGFGLEATGWTGALLACGGIVLLGVSVAVERRSLTSGPATVCSSSGA"
     gene            1012..>2703
                     /locus_tag="VKJ77_05935"
     CDS             1012..>2703
                     /locus_tag="VKJ77_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HMC44847.1"
                     /translation="MNVFPANPATPMADNSSGNSAADVARSNIEPARWTQADSSADVL
                     LRSAHAKVDTTAWAWYQVGEDLHLAGQGDAAQEWPSLLTADTFHSFCTAQRLCLWPTG
                     SGESILGWLLAPASHAGNLTLSNLARSLGEALQTDALARAQNTQRVLYEIAYLASSVR
                     ERSAFLRGVHQQLATLIDAENFYLALYDSPSGEIIYPYYVDVIDTYARECATYDTLDP
                     SRLSLTGQVLTSGQPLLIDSAGILTAEREGRFFCVGDRPEFWMGAPLKNASDEVFGMI
                     AMQVYDVSRIYSVEDRALFLVVARHVAMALDRILHRDDLEETVSRRTAELSELNRALM
                     QEIAERKRAEHLQGALFQIAELSSRHGDMMEFFQSLHGIVGELLYAQNFYIALVDSTT
                     ATVSFPYYVDELLNDHPTPRRNRRGLTEYVIRQRRPCLIDLAEATRLVDTGEIERSGE
                     SIKLRSWLGIPLFDGDVVRGVLAVQSYSTHVRYSLRDQELLTFVSRHIDTALSRRSAA
                     EALHSANHELEERVQNRTRELDLANARLQHENSHDALTGLPNRSHLLQRLSEAWLD"
BASE COUNT          479 a          868 c          842 g          514 t
ORIGIN      
        1 ccggcgcgcg cgggccgtcg gacgcgtgat gctcggcctg acgatcgcca atattttcgg
       61 cgtgccgctg gcgacctggc tcggtcaatg gctcggctgg cgcgcggatt ttttgctcgt
      121 cggcacgcta ggcattctta cgatgattgg cgtgcgcatc ttcctgccgc ccattcacgc
      181 gggcggcgcg actccacgtc gcgagcttgg cgtattcagg cgcctgcaag tctggttgac
      241 gctttcggtg atcgcggtcg gcttcggcgg actgtttgcg gtgtacacct acattacgcc
      301 aacgttgctg aacgtgactc acgtggcgcc ctggagggtg ccgctgttgc tcggcgcact
      361 gggagtcggc atgacggcgg gcagcctgat tggcggcgta ctggccgaca agtcgcggct
      421 ctggaccatc ttcggcatgc tgatctggaa tgccgccgcg ctagccgctt tcgcgtattc
      481 ttcggccaac gaatggacag ccacgctcaa cctgttcgct atgggactcg gcatagccgt
      541 ggtcccggcc gtgcagacgc gcctgatgga cgtggcgggc gacgcccaga ccgtcgcggc
      601 cgcgctcaat cattcggcct tcaacattgc gaatgcgctg ggtgcgtggg cgggcggcat
      661 agtggtcgcg atgggtttcg gactcgaggc cacgggctgg accggtgcgt tgctcgcctg
      721 cggcgggatc gtgctgctgg gcgtttccgt agcggtggag cggcgctcat tgacgtccgg
      781 tcctgcaacg gtgtgcagtt cgtcgggtgc gtgatgaata cgccgaccct tacgaaaacc
      841 ctcaagccct aagcggcact gccgttatag taatcaggtg cgtgcgcgca caattgaagg
      901 agcgggcttg ttcacttgtt caatccctcc agtgtccgaa tgaagagtag aaacatcgac
      961 atcaaacgag attgaatcag gagccggggc agccttcggc tcggagcgcc gatgaacgtc
     1021 tttcccgcga accctgccac gccgatggcc gacaacagca gcggcaactc cgctgcggac
     1081 gtcgctcgct cgaacattga gccggcgcgg tggacccagg cggacagttc cgccgacgtc
     1141 ctgttgcgca gtgcccacgc gaaggtcgat accaccgcgt gggcgtggta tcaggtgggc
     1201 gaagacctgc acctcgcggg tcagggcgat gccgcgcaag agtggcccag ccttctcacc
     1261 gccgacacct tccactcctt ttgcacggcc cagcgtctgt gtctctggcc aacgggcagc
     1321 ggcgaaagca tcctcggctg gctgctcgcg cccgccagcc acgcgggaaa cctgacgctt
     1381 tccaaccttg cccgcagcct gggcgaagcc ctgcagaccg acgcgctggc gcgcgcgcaa
     1441 aacacccagc gtgtactcta cgaaatcgct tatcttgcga gttccgtgcg cgaacgatcg
     1501 gcgttcctgc gcggtgtgca ccagcaactc gccacgctga tcgacgcaga aaatttctat
     1561 ctcgcgcttt acgactcgcc gagcggcgag atcatctacc cgtattacgt cgatgtgatc
     1621 gatacctacg cgcgcgaatg cgcgacctac gacacgctcg acccatcacg cttgtcgctc
     1681 acgggccaag tgctgacctc gggccagccg ctgctgatcg actccgccgg gatcctcacc
     1741 gccgagcgtg aaggccgctt cttttgcgtg ggagatcgcc ccgaattctg gatgggcgcg
     1801 ccgctcaaga acgcctccga cgaagtcttc ggcatgatcg ccatgcaggt gtacgacgtc
     1861 tcgcgaatct acagtgtgga ggaccgcgcg cttttcctgg tcgtcgcccg gcacgtggcg
     1921 atggcgctcg accggatcct gcatcgtgac gatctggaag aaacggtatc gcgccggact
     1981 gctgagttat ccgaattaaa ccgcgcattg atgcaggaga tcgcggaacg caaacgggcc
     2041 gaacatttgc aaggggcgtt gttccagatc gccgaactgt cgagccggca cggcgacatg
     2101 atggaatttt tccagagcct gcacgggatt gtcggcgagt tgctgtatgc gcaaaacttc
     2161 tacattgcgc tggtcgacag cacgactgcg accgtgtcct tcccctatta cgtcgacgag
     2221 ctgctgaacg accatcccac gccacgacgc aaccggcgcg gcctgaccga gtatgtgatc
     2281 aggcaacgcc gtccctgtct gatcgacctc gctgaagcca cgcggctagt ggacaccggc
     2341 gaaatagaac gctcgggcga gagcatcaag ctgcgttcat ggctcggcat tccgctgttc
     2401 gacggcgacg tcgtgcgcgg cgtgcttgcc gtgcaaagct attccacaca cgtgcgttac
     2461 tcgctgcgcg accaggaact gctgacgttc gtctcgcgcc atatcgatac ggccctctcg
     2521 cgacgcagcg ccgccgaagc cctgcattca gccaaccacg aactcgagga gcgcgtgcag
     2581 aaccgcacgc gcgagcttga tctcgccaac gcccgactgc agcacgaaaa ctcgcacgac
     2641 gcgttgaccg gactgccgaa ccgcagccac ttgctgcagc ggctgagcga ggcatggctc
     2701 gat
//
LOCUS       DATGBK010000410         1962 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_259660, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000410 DATGBK010000000
VERSION     DATGBK010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259660"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1453)
                     /locus_tag="VKJ77_05940"
     CDS             complement(<1..1453)
                     /locus_tag="VKJ77_05940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HMC44848.1"
                     /translation="MASNSKAELLDKLWGRMSERGDFPMLSQALRTTVSAMSDDDLDF
                     TALVQVVLSDFGLTQKVLRLANSAMYISFGGNITTVTRALMVLGMDAVGHLVVGLKLV
                     DHFHQSAPRRIDAKLELNRTLLSGTVARQVTEHSEFRASEEAVVCTLMRQIGKLLVAF
                     YLETEWDQLRRKATAEQISDSLACSTLLGVTFEEIGMEAADRWRLPEIIRTGMLTRDP
                     LAPIDETTPRHVRWLQAVTNYSTEVADALTAQHVDETHRESSLVEIANRYSRALLTDA
                     STLAAMSLALANEDSNDGVMREIVELRADADAIARAGLSAEARIAAGLEDLRSLPSKN
                     ALSAVLALASEAVLAGLAFSRTVVFVRQSNNEFHARLGLGAGVENLLPSLTFPAAFEP
                     DVFHLAISNPVGIFIENARDPRIEARLPRWFKPSFGDAHAFVLLPVKANGSTVAMLYG
                     DWTQAQNVRKITQPEMAALNELMRELSRFFSNAD"
     gene            complement(1685..>1962)
                     /locus_tag="VKJ77_05945"
     CDS             complement(1685..>1962)
                     /locus_tag="VKJ77_05945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC44849.1"
                     /translation="FPLSKLKIDRSFIENLLTSRNNQAIVAAVVGLAKSLGLELVAEG
                     VETEAQRELLIEMGCDQIQGWLISKALPAGDLMRCFQDKTLFLQAPL"
BASE COUNT          381 a          614 c          594 g          373 t
ORIGIN      
        1 agtccgcgtt agaaaaaaaa cgactcagtt cgcgcatgag ttcattcagc gcggccattt
       61 ccggctgcgt gatcttgcgt acgttctgcg cttgcgtcca gtcgccgtaa agcatggcga
      121 ccgtcgaacc gttcgccttc acgggcagca gcacgaacgc gtgggcgtcg ccgaatgacg
      181 gtttgaacca gcgcggcaag cgggcttcaa tgcggggatc gcgggcattc tcgataaaaa
      241 tcccgaccgg attcgagatc gccagatgga acacgtcagg ttcgaacgcc gcgggaaatg
      301 tcagcgacgg cagcaggttc tccacgcccg ccccaagtcc gagccgcgcg tggaactcat
      361 tgttggactg gcgcacgaat accaccgtgc gcgaaaacgc gagtccggcc agcaccgctt
      421 ccgacgccag cgccaacacg gcgctcagtg cgttcttcga cggcagcgag cgcaagtcct
      481 caagtcccgc ggcaatccgc gcttccgccg ataaccccgc gcgcgcaatg gcatcggcgt
      541 ccgcgcgcag ttcgacgatc tcccgcatca cgccgtcgtt tgagtcctcg ttcgcgagcg
      601 caagactcat cgcggcgagc gtggaggcgt cagtcagcaa cgcgcggctg tagcggttcg
      661 cgatttccac cagcgacgac tcccgatgcg tctcgtcgac atgctgtgcg gtcagcgcat
      721 cggccacttc ggtggaatag ttggtgacag cctgcagcca gcgtacgtgg cgcggcgttg
      781 tttcatcgat tggggcgagc gggtcgcggg tcagcatgcc ggtgcggatg atctccggca
      841 ggcgccagcg gtccgcggct tccatgccga tttcctcgaa ggtgacgccg agcaacgtgc
      901 tgcaagcgag gctgtcgctg atctgctcgg ctgtggcctt gcggcgcagc tgatcccact
      961 cggtctcgag ataaaacgcc accagcagct tgccgatctg acgcatcagc gtgcagacca
     1021 ccgcttcttc cgacgcccgg aactcgctgt gctcggtcac ttgccgcgca acggtgccgg
     1081 acagcagcgt gcggttcagt tcgagcttgg cgtcaatgcg ccggggcgcg ctttgatgaa
     1141 aatgatcgac cagcttcagc ccgaccacca ggtggccgac cgcgtccatg cccagcacca
     1201 tcaacgcgcg cgtcacggtg gtgatgttgc cgccgaacga gatgtacatc gcggagttgg
     1261 cgaggcgcaa caccttctgc gtgaggccga agtcggacag aacgacctgg accagggcgg
     1321 taaagtccag gtcgtcgtcg ctcattgcgg acacagtggt gcgcagagcc tgagagagca
     1381 tcggaaagtc tccgcgctcg ctcatgcggc cccacagctt gtccagtaat tcggctttgg
     1441 aattgcttgc catgcgattt gtgtcaatgc cttacacgtt ccggaccggg tgcccggaac
     1501 ggcttgaatc gtcgacctgg gtcgaagtgt aatgcgcgga aaaaaggccc gcatatatcc
     1561 tgcataactc ccgcataaac cctataacgg ccagctcacg cggaagcttt acagctgacc
     1621 attgatgaaa agctgtaaca gcgcctgtcc ttggcccctg ccgacgcaaa aacgtgacgg
     1681 tatcttataa aggcgcctgg agaaagagcg ttttatcctg aaagcaacgc atcaggtcgc
     1741 cggcgggcag ggctttgctg atcagccatc cctggatctg gtcacagccc atctcgatca
     1801 acagttcgcg ctgcgcttct gtctccacgc cttccgccac gagttcgagc cccagcgatt
     1861 ttgccaggcc cacgactgcg gcgacaattg cctggttgtt gcgcgaggtc agcaggtttt
     1921 cgatgaagct gcgatcgatc ttcagcttcg acagcgggaa gc
//
LOCUS       DATGBK010000411         1672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_97568, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000411 DATGBK010000000
VERSION     DATGBK010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97568"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            277..1143
                     /locus_tag="VKJ77_05950"
     CDS             277..1143
                     /locus_tag="VKJ77_05950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44850.1"
                     /translation="MMRELKTFLAVVRFGTFASAGAHIGLTQSAVSAQIQRLEEDLGF
                     PLFDRTGRSATLNAAGKQTVDTAEELLSVYARLAARGGTAEQSGLLRVGAIASAQASF
                     LVSAIELFRQTSPGWRIRVVPGVSLNLLAQVDSGEVDLAVIIKPPFALPSELHWRTLL
                     TEPFVLLVPRELADRPWRALLKSEPFIRYDRSSFGGRLVDRFLRRVRVTVQDVVELDE
                     LQGIVGLVAHGVGIALIPQSSALHMPKTVHALSLGDETFTREIGLVQRHTRNEQTGTV
                     QFAGSVCAVLPR"
     gene            complement(1260..>1672)
                     /locus_tag="VKJ77_05955"
     CDS             complement(1260..>1672)
                     /locus_tag="VKJ77_05955"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC44851.1"
                     /translation="TSPAIASIAVFSPWLDLAMTGASVASPDIHDPIFQPEMLAGPAG
                     AYLAGADPRDGRASPLYAVPEVVPPLLIQVGGDEILLDDARRYAQAAADKGGEVRLDI
                     FEGLHHVFQGATRDLPAARRALDAVAAFLNRHWA"
BASE COUNT          319 a          490 c          543 g          320 t
ORIGIN      
        1 atgtcatgga ccggaaaggc gagatgaaaa ggggaaatgg cagcagtggt gtcgctcatg
       61 gcaggctcgg atatcggttg agtgatacgt attcgacgac gcggacaagg tgtgcccgca
      121 acgccgtcat ggtgcgtgaa aaatggaggt cacgccatgg gaagacagtt taggggcaac
      181 cagaatagtt gaataacgat agttttttta gctcagtatc aataaaatcg atcaattaaa
      241 acctgcaaaa gatccactaa agcggtcgat acaaccatga tgcgagagct gaaaactttt
      301 ttggcggtgg tgcgtttcgg gacgttcgcg agtgccgggg cgcatattgg gctgactcaa
      361 tcggctgtca gcgcacagat ccagcggctg gaggaggatc ttggtttccc gctattcgac
      421 cggaccggcc gctcggccac gctcaacgcc gcgggcaagc agactgtcga tacggccgaa
      481 gaattgttgt cggtttacgc ccgcctggcc gcccggggcg gcacagcgga acagtccggc
      541 ctgctgcgag tgggggctat tgcatcggcg caggcttcgt ttctcgtcag tgcaattgaa
      601 ttgttccgtc agacgtcgcc cgggtggcga atccgcgtgg ttcctggcgt gtcgctcaat
      661 ttgctcgcgc aggtggactc cggcgaggtc gacctcgcgg tgatcatcaa accccctttc
      721 gcgttgccgt ccgaattgca ctggcgcacc ctgctcaccg aacccttcgt gctgttggtc
      781 ccccgcgagc ttgcagaccg gccatggcgc gcgctgctca agtcggagcc ctttattcga
      841 tacgaccgga gctcatttgg aggccgcctc gtcgaccgct ttcttagaag ggttcgcgtc
      901 actgtgcaag acgtggtcga gctggatgaa ttgcagggaa tcgtcgggct cgtggcgcac
      961 ggcgttggta ttgcgctcat cccgcaatca tccgcgctgc acatgccgaa gaccgtgcac
     1021 gcgttgtctc ttggcgacga aaccttcacg cgtgagatcg gcctcgtcca acggcatacg
     1081 agaaatgagc aaaccggcac ggtgcaattc gccggatccg tctgtgcagt gctaccgcgg
     1141 tgagggatgc cgcgtcaggg ggcaaggtgt agcagaacgg aaaaccgggt taaaccgcgt
     1201 tcccgccgca agagcgccgg gatctgcttg gtcccggctg ctctcctgaa cgcgtcgcgc
     1261 taggcccagt ggcggttcag gaacgctgcc accgcgtcga gcgcgcggcg cgcggccggc
     1321 aggtctctcg tcgcgccttg gaaaacgtgg tgcagccctt cgaagatatc gagccgtacc
     1381 tcgccgccct tgtccgcggc tgcctgcgca tagcgccgcg cgtcatccag caggatttcg
     1441 tcgccgccca cctggataag caacggcggc acgacctcgg gcacagcgta cagcggcgac
     1501 gcccggccgt ccctcggatc ggcgccggca agataggctc ctgcaggccc ggcaagcatt
     1561 tccggctgga agatggggtc gtggatgtcg ggactggcga ccgaggcgcc ggtcatcgcc
     1621 agatcgagcc agggcgaaaa gaccgcgatg gacgctatcg ccggcgaggt cg
//
LOCUS       DATGBK010000412         1772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213277, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000412 DATGBK010000000
VERSION     DATGBK010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213277"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..309)
                     /locus_tag="VKJ77_05960"
     CDS             complement(<1..309)
                     /locus_tag="VKJ77_05960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase"
                     /protein_id="HMC44852.1"
                     /translation="MSRISVSRLAAAVAFACVLLGTASAPGVAHAAAELKPALASTNV
                     SVGPQYDTTHVYVSNEDIDAFVNSFLATFGGKASPRAVFTVTPTPSKTASQYVQTPVG
                     M"
     gene            complement(367..612)
                     /locus_tag="VKJ77_05965"
     CDS             complement(367..612)
                     /locus_tag="VKJ77_05965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007578979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1427 family protein"
                     /protein_id="HMC44853.1"
                     /translation="MPYLISLAAGFVVGLLYCLVRVQSPAPPLIALAGLLGIVLGEHT
                     IPVVRAHLFPDSVQVQQMEAPASAKPAPNVDPGNGGK"
     gene            complement(639..1280)
                     /locus_tag="VKJ77_05970"
     CDS             complement(639..1280)
                     /locus_tag="VKJ77_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HMC44854.1"
                     /translation="MAKRIAGIAIPDSKMARAAAAAARAIEPDILYRHSSRVFLFAAL
                     IGVRRQLAFNAELLYVAALFHDMGLTSLYRDSQMRFEVDSANAVRDFLERYDIPDDDV
                     ADVWNAIALHTTFGICSHMSALTGLVAAGVETDLLGMHFDEVGRVERNAVLVEYPRGT
                     GFKQQIIDVFAQAMANRPATTFGTVNADVLERCDPNYRRMNFCGLILGSDWKE"
     gene            complement(1366..>1772)
                     /locus_tag="VKJ77_05975"
     CDS             complement(1366..>1772)
                     /locus_tag="VKJ77_05975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC44855.1"
                     /translation="WFSGEEDRKGALVPGQFADFAALTDDYFTVDETRIKYLSSVLTV
                     VNGKVVHADAEFSSLAPPPLPVSPSWSPVAEFGGYSRYQPATILQQACADSCVNLCGI
                     HAHGHMWAWRKQVPVSDANGFWGALGCSCFAF"
BASE COUNT          378 a          551 c          524 g          319 t
ORIGIN      
        1 catgccgacc ggcgtctgca cgtattgcga cgcggtcttg ctcggcgtcg gcgtcacggt
       61 gaagaccgcg cgcggcgaag ccttgccgcc gaaggtcgcc aggaagctgt tgacgaatgc
      121 atcgatatct tcgttggaca catacacgtg cgtcgtatcg tactgaggac caacggatac
      181 gttcgtgctc gccaacgccg gcttgagttc ggctgcggca tgggcaacac cgggcgcgct
      241 cgccgtgccg agcaacacgc aagcgaaggc gaccgcggcg gcaagccggg agacggaaat
      301 gcgcgacatg gaaaagctcc tgtttctatt cggtataagg ggagataaga cagcggtgtg
      361 cttgattcac tttccgccgt ttcccgggtc aacgttaggc gctggtttcg ccgatgcggg
      421 cgcctccatt tgctgaacct gaacgctgtc cgggaacagg tgagcgcgca ccacgggtat
      481 cgtatgctcc ccgagcacga tacccagcaa tcctgcgagc gcgatcaacg gcggtgcggg
      541 tgactgcacg cgcaccaggc agtacagcag gccgaccaca aagcctgctg caagcgaaat
      601 aagatagggc atcgtcaagt ctcttgtcta aagcaaaact attctttcca gtcggagccg
      661 agaatcaggc cgcagaaatt catgcgccga tagttggggt cgcaccgttc gagcacgtcg
      721 gcgttgaccg tcccgaatgt ggttgcggga cggttcgcca tcgcctgcgc gaacacgtcg
      781 atgatctgtt gcttgaaacc cgtgccgcgc ggatattcga ccagcaccgc gttgcgctcc
      841 acgcgaccga cctcatcgaa atgcatgccg agcagatccg tttcgacacc ggccgcaacc
      901 agcccggtca acgcggacat gtgcgaacaa atgccgaacg tggtgtgcag tgcgatcgca
      961 ttccagacat cggcgacatc gtcatcggga atgtcataac gctcaagaaa atcccttacc
     1021 gcattggcgc tgtccacttc gaagcgcatc tgggagtcgc gatatagcga ggtcaggccc
     1081 atgtcatgaa aaagcgcagc cacgtacagc aactcggcgt tgaaggcgag ctgcctgcga
     1141 acaccgatca gcgccgcgaa caggaacacc cgcgatgaat ggcgataaag aatatccggc
     1201 tcgatagcgc gcgcggcagc agccgctgca cgcgccatct tgctgtctgg aatcgcgatt
     1261 cccgcgatgc gctttgccat cgccacctcc ttgggccagc ctgcacgaac cctctgctca
     1321 tgcgccctca agcaacctga atcgtccttg attctcgacg acgcttcaga acgcgaagca
     1381 actgcagccg agcgcacccc agaacccgtt tgcatcgctg acgggtacct gtttgcgcca
     1441 tgcccacatg tgaccatgag catgaatgcc gcacaggttg acgcaactgt cggcgcacgc
     1501 ctgctggagg atcgtggcgg gctggtatcg gctataaccg ccgaactcgg ctaccggcga
     1561 ccacgacgga ctaacgggta acggcggcgg tgcaagcgag ctgaactcgg cgtccgcatg
     1621 aaccaccttg ccgttgacca cggtcagcac tgacgataga tacttgatcc gcgtttcatc
     1681 gactgtgaaa tagtcgtcgg tgagcgcggc gaagtccgcg aactgcccgg gcaccagcgc
     1741 gcccttacgg tcctcttcgc ccgagaacca gc
//
LOCUS       DATGBK010000413         1945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_143682, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000413 DATGBK010000000
VERSION     DATGBK010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143682"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VKJ77_05980"
     CDS             complement(<1..184)
                     /locus_tag="VKJ77_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006753181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HMC44856.1"
                     /translation="MATKRNHPDELLIGLVSISDRASQGVYEDKGIPSLQEWLASALS
                     SPWRAETRLIQDDAATI"
     gene            complement(168..818)
                     /gene="yjgA"
                     /locus_tag="VKJ77_05985"
     CDS             complement(168..818)
                     /gene="yjgA"
                     /locus_tag="VKJ77_05985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012363370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis factor YjgA"
                     /protein_id="HMC44857.1"
                     /translation="MNRKTRTQPINPAEASEQDGSEHGYDRPSKSQLKRDMLALQVLG
                     VTLIELPKDALKRMPMPEKLDDAVRDARRITDHEGKRRQLQYVGRVMRSLTDEETAAI
                     RTALDSYRGVNRAETAKLHWIERTREKLLADDAALTDFIRQHPGVDPQEGRTLIRNAR
                     KEREQAKPPRYFRELFQWIKTAAGVEDEDDESLIEGEAEDEGVEFPEREDDDGYKA"
     gene            1001..>1945
                     /locus_tag="VKJ77_05990"
     CDS             1001..>1945
                     /locus_tag="VKJ77_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HMC44858.1"
                     /translation="MAADMDVRQRFFPHTQDELKEIASDILRHAKELGATDSATEISE
                     GYGLSVSVRRGEVETIEHNRDKMVGVTVFIGNKRGNASTSDFTRAALKDTVAAAYNIA
                     RFTAEDSAAGLAEEELLEKAPQDLDLYHPWDIDAEEAADLARRAEDAAFAVDKRIQNS
                     EGASVSAQHSQFVLATSRGFMGGYPFSRHYVACAPIAGSGRDMQRDDWYTSKRNAVDL
                     AEPEAIGRYAAHRALARMGARGLDTRKCRVMFEAPLAAGILGAFVQAVSGGALYRKTT
                     FLVDSLGKPVFAPHIQVLEDPHVKGGMGSAPFDEEGVRT"
BASE COUNT          354 a          605 c          607 g          379 t
ORIGIN      
        1 aaatagtcgc cgcgtcgtcc tggatcagcc gggtttccgc gcgccagggc gaactcagtg
       61 cactcgcgag ccactcttgc agcgatggaa tgcccttgtc ctcgtacacg ccctgcgaag
      121 cccggtcgct gatcgacacc agcccgatca gcaattcgtc ggggtggtta cgctttgtag
      181 ccatcgtcgt cttctcgttc ggggaattcg acgccttcgt cttcggcttc gccttcgatc
      241 aagctctcgt catcttcgtc ttccacgccc gccgcggtct tgatccattg gaacagctcg
      301 cggaagtagc gcggcggttt ggcctgttcg cgttccttgc gggcgttgcg gatcagcgtg
      361 cggccttctt gcgggtcgac gcctggatgc tggcggatga agtcggtgag ggcggcgtca
      421 tcggcgagaa gtttttcgcg ggtgcgttcg atccagtgca gcttggctgt ttcggctcgg
      481 ttcacgccgc gatatgaatc cagcgcggtg cgaatcgctg ccgtttcctc gtcggtcagc
      541 gagcgcatta cccgtccgac atactgcagt tgccggcgtt taccttcgtg gtcggtaatg
      601 cggcgggcgt cgcggacggc gtcgtcgagc ttttccggca tgggcatgcg tttgagcgcg
      661 tctttcggca gctcgatcag cgttacgccc agtacttgca gcgcaagcat gtcgcgtttg
      721 agctgggatt tgctgggacg gtcgtagccg tgctcgctgc cgtcctgttc ggaggcctcg
      781 gccgggttta tcggttgcgt gcgggtttta cggttcatcc cggtattgta gcgtggcagg
      841 ggtgaaacca aacctgtgct ggacttgcta tcatcgtgcg atggtcgaaa accggccaca
      901 cagccgcatt caagtgcaca gcgagcgcta acccgccccg tcaccacgac caacaacgcg
      961 aacacgctcg acacgtcgag cacccacagg cagacataaa atggcagcag acatggacgt
     1021 caggcaacgc tttttcccgc acacccagga cgagctgaag gaaatcgcgt ccgacatcct
     1081 gcggcatgca aaggagctcg gcgccactga ctccgccacc gagatctccg aaggctacgg
     1141 cctctcagtc agcgtgcgcc gcggcgaagt cgagaccatc gaacacaatc gcgacaaaat
     1201 ggtaggcgtg acggtgttta tcgggaataa acgcggtaat gccagcacct cggacttcac
     1261 gcgcgcagcg ctgaaagaca cggtcgctgc cgcctacaac atcgcgcgtt tcacagccga
     1321 agacagcgcc gcgggcctcg ccgaagaaga gttgctggaa aaggcgccgc aagatcttga
     1381 tctctaccac ccatgggata tcgacgctga agaagccgcc gatctcgccc gtcgagcaga
     1441 agacgccgcc ttcgcagtcg ataaacgcat ccagaactcc gaaggcgcga gcgtatcggc
     1501 gcagcactcg cagttcgtgc tggcgacatc gcgcgggttc atgggcggtt atccgttctc
     1561 gcgtcactac gtggcatgtg cgcccatcgc gggttccggc cgcgacatgc agcgcgatga
     1621 ctggtacaca tcgaaacgca acgccgtcga tctcgccgag ccggaagcca tcggccggta
     1681 cgccgcgcac cgcgcgctcg cccgcatggg tgcacgcggg ctcgataccc gcaaatgccg
     1741 cgtgatgttc gaagcgccgc tggcagccgg catcctgggt gcattcgtac aggcggtgag
     1801 cggcggcgcg ctatatagaa agaccacgtt cctcgtcgat agcctcggca agccggtgtt
     1861 tgcgccgcat atccaggtgc tggaagaccc gcacgtgaag ggcggcatgg gcagtgcgcc
     1921 tttcgacgaa gaaggcgtgc gcacg
//
LOCUS       DATGBK010000414         1793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_51443, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000414 DATGBK010000000
VERSION     DATGBK010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51443"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1498)
                     /locus_tag="VKJ77_05995"
     CDS             complement(<1..1498)
                     /locus_tag="VKJ77_05995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HMC44859.1"
                     /translation="MSKRLKRVYLAVATALAAFTLIGCGTASAVRPTAADYSLSPDDR
                     IFIQLREAARSNDAGRAMQLAAQIPNYPAPGYIDYYTIKPQLFDSQGHARVDAPDEPV
                     LAFLQRYDGQAIADRMRNDYLTVLGARHDWRNFLDQYPRFVLNDDTQVKCYALEARAS
                     RGENVADAARALLVDPKWYGDGCVDLINALAVSQQFTADDVWQQIRLAYEQNYTNTAS
                     RIADALGQQRPDQSVVDTAANTPPLYLARGVGRDTSSHQLALVAITRMARNDPAMAAA
                     SFSAVAPALTPSERAVGWGTIAYQAASKRMPSAVDWYRLSVNAPLSNPAYEWRTRSAL
                     LAGDWTMVRWSIEQMPPTLRNQPAWIYWHARSLKQAGDTATANQEFTGIADQFNFYGQ
                     LASEELGQKITVPPRTEVSDAEIAQAAAVPGFALSQKFYAMNLRLEGNREWNWPLRTM
                     TDRQLIAAAQYAKRIELFDRAVNTADKTKTEHDFSLRYLSPYRDVVERE"
     gene            1522..>1793
                     /locus_tag="VKJ77_06000"
     CDS             1522..>1793
                     /locus_tag="VKJ77_06000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HMC44860.1"
                     /translation="MQSIARNPLLETKSTLRANLLATREAQGARADQGARGEALARRL
                     MEAVARYPKASCIGFYWPVAGEFDARDVLTVWLALDASRKAALPVVV"
BASE COUNT          318 a          507 c          608 g          360 t
ORIGIN      
        1 actcccgctc gaccacatca cgatacggcg agagataccg caacgagaaa tcgtgttcgg
       61 tcttggtttt gtccgccgtg ttcaccgcgc ggtcgaacaa ttcgatccgc tttgcgtact
      121 gcgcggccgc gatcaattgc cggtccgtca tggtacgcag cggccagttc cattcgcggt
      181 tgccttcgag ccggaggttc atggcgtaga acttctgcga cagcgcaaaa cccggcaccg
      241 ctgcagcctg ggcgatttcg gcgtcgctaa cttccgtgcg gggcggcacc gtgatcttct
      301 ggccgagttc ttcagacgcc aactggccgt agaagttgaa ctgatccgcg atgcccgtga
      361 attcctgatt ggccgtggcg gtgtcacctg cttgcttcag tgagcgtgcg tgccagtaga
      421 tccacgcggg ctggttgcgc agcgtgggcg gcatttgttc gatcgaccag cgcaccatgg
      481 tccagtcgcc ggcgagcaat gcgctgcgcg tgcgccattc ataggcggga ttcgacaacg
      541 gcgcattcac cgaaagccgg taccagtcga cggcacttgg catgcgcttc gatgcggcct
      601 gataagcgat cgtgccccag ccgacagcgc gttccgacgg cgtcaacgcc ggcgcgaccg
      661 cgctgaacga tgccgctgcc atggccggat cgttgcgcgc catgcgcgtg atggcgacga
      721 gcgccaattg atgcgacgac gtgtcgcgac ctacgccgcg tgcaagatac agcggcgggg
      781 tgttggcggc ggtgtcgacg acgctttgat ccgggcgttg ctggcccagc gcgtcagcga
      841 tacgactggc ggtgttcgta tagttctgct cgtaggctag gcggatctgc tgccagacgt
      901 cgtcggcggt gaattgctgc gagacggcca acgcgttgat caggtcgacg caaccatcgc
      961 cataccattt aggatcgacg agcaaagcgc gcgcggcgtc tgcgacattt tctccgcgcg
     1021 acgcccgtgc ttcgagcgcg tagcatttca cttgcgtgtc atcgttcagg acgaagcgcg
     1081 ggtattgatc gaggaaattg cgccagtcgt ggcgagcgcc gagcacggtc agatagtcgt
     1141 tgcgcatgcg gtcggcgata gcctggccgt cgtagcgctg caggaacgcg aggaccggct
     1201 cgtccggtgc gtcgacgcgc gcgtgtcctt gcgagtcgaa gagttgcggt ttgatggtgt
     1261 agtaatcgat ataacccggc gccggataat tcggaatttg cgcggcgagt tgcatggcac
     1321 ggccggcgtc attcgagcgc gcggcttcgc gcaactggat gaagatgcgg tcgtcgggcg
     1381 agagcgaata atcagcggct gtagggcgca cggcggaggc ggtaccgcat ccgatcagcg
     1441 tgaacgcagc gagcgcggtt gcgactgcga gatatactcg tttgagacgt tttgacatcg
     1501 ttatttctgg agcgcgaagt gatgcaaagc atagcacgca accctctgct ggaaaccaaa
     1561 agcacgctgc gtgcaaacct gcttgcaacc cgcgaggcgc aaggcgctcg ggccgatcaa
     1621 ggtgcacgtg gtgaagcgtt ggcgcggcgt ttgatggaag cggtggcgcg atatccgaaa
     1681 gcatcgtgca tcggttttta ttggccggtt gccggggagt tcgatgcgcg cgatgtgctg
     1741 acagtctggc tggcgctgga tgcatcgcgg aaggcagcat tgccggtggt ggt
//
LOCUS       DATGBK010000415         1695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_305886, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000415 DATGBK010000000
VERSION     DATGBK010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305886"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..763)
                     /locus_tag="VKJ77_06005"
     CDS             complement(77..763)
                     /locus_tag="VKJ77_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HMC44861.1"
                     /translation="MTTTIAGIRIPDSAMARAATELVRDTEPDLLYNHSRRVFLFGAL
                     TGERRKLAYDAELLYIGAMFHDMGLIDAYSSATERFEVDGANAARDFLKGYSIGEHDI
                     EQVWDSIALHTTPGIPQHKKPVVALVTAGVEMDVLGLAYDEFTESQRKQVITVHPREV
                     NFKEGIIDAFAHGTIMKPETTFGNVKADVLALKDPSYKRLNFCTLILGSSWNDGAAGC
                     AHCSDPAHNH"
     gene            1013..>1695
                     /locus_tag="VKJ77_06010"
     CDS             1013..>1695
                     /locus_tag="VKJ77_06010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC44862.1"
                     /translation="MRSVAIAIFPQVQALDVAGPLDVFAEANGFVAPGAGYAITLVSV
                     DNTPVRASNGTRMLADTTCEEPQQRYDIALVAGGPGLPFDPPDPRLSTWLRDVASRCE
                     RYGSICTGAFALGHAGLIDGRHVTTHWQNAPQLARQFPLAQVELDRIHIRDGNLVTSA
                     GVTAGIDVALALVAEDHGPRIALAVAKRLVVFAQRRGGQSQFSPYLSAPADETSPAAK
                     VQAYVMEHIG"
BASE COUNT          307 a          523 c          523 g          342 t
ORIGIN      
        1 aatcccatac gcttatctgt tttagcgata aacgggccgc tccagtggac gagcggcctt
       61 gcgcctcgcc gaattatcaa tgattatgcg ccgggtcgct gcaatgagcg caaccagccg
      121 cgccgtcatt ccacgacgac cccaggatca gggtgcagaa attgaggcgc ttgtaggagg
      181 ggtccttgag agcgagaaca tcggccttca cgttgccgaa cgtggtctcc ggcttcatga
      241 tcgtgccgtg agcgaacgca tcgatgatcc cttccttgaa gttcacttcc cgcggatgca
      301 cggtgatgac ctgtttgcgc tgggactcgg tgaattcgtc gtaagcaagc ccgagcacgt
      361 ccatctccac gcccgccgtg accagcgcga cgaccggctt cttgtgctga ggaatccccg
      421 gcgtggtgtg caatgcgatt gaatcccaaa cctgttctat gtcgtgctcg ccaatgctgt
      481 aacccttgag gaagtcgcgt gcggcgttcg caccgtccac ttcgaagcgc tcggttgcgc
      541 tgctgtaggc atcgatcaag cccatgtcat ggaacattgc gccgatgtaa agcagctccg
      601 cgtcgtacgc cagcttacgc cgttcgccgg tcaacgcgcc aaacaggaac acgcggcgcg
      661 agtggttata cagcaggtcc ggctcggtat cgcgaacgag ttcagtcgcg gcgcgcgcca
      721 tggcgctgtc gggaatgcgg ataccggcaa tggtagtggt catgttcaat gctccttgga
      781 tggtgggctt ctccccgatg ccgcgctcga tgccgcgaac accttgctaa aatgcacagt
      841 tcggggcggg tcatcggggg aagcgaaagc gggtggacga ccaattcagt gtcgccgcgc
      901 gccgctacgg ccgcaatgca ttgggtccgt cgaactctgc caaccgtacg gcgtctcctg
      961 ccaagcacgc aaaacgcgtg aaaaatagcc ctttccatag gagttcgacc caatgcgtag
     1021 cgtcgccatc gcgatttttc cgcaagtgca ggcgctcgat gtagcgggtc cactcgacgt
     1081 attcgccgag gcgaacggtt tcgtcgcccc gggcgcgggg tacgcgatca cgctggtcag
     1141 cgtggacaac acgccggtgc gcgcgtcgaa cggcacgcga atgctggcgg acactacgtg
     1201 cgaggagccg cagcagcgtt acgatatcgc ccttgtggcc ggtggtcccg gcctgccctt
     1261 cgatccccct gatccgcgcc tgagcacgtg gctgcgcgac gttgcttctc gttgcgagcg
     1321 ctacggttcg atctgcaccg gcgcgttcgc gctgggtcat gccggtctga tcgatggccg
     1381 tcatgtcaca acgcactggc aaaatgcgcc tcaactcgca cggcaatttc ccttggccca
     1441 ggtcgagctc gaccgtattc atattcgcga cggcaacctg gtgacatcgg cgggcgtgac
     1501 ggcgggtatt gatgtcgcgc tcgcactcgt tgccgaagat catggcccgc gtatcgcgct
     1561 cgctgtcgcc aagcgtctgg tcgtatttgc gcagcgtcgc ggcggccagt cgcaattcag
     1621 cccgtacctg agtgcgcctg cggacgagac ctcgcccgca gccaaggtgc aggcatacgt
     1681 gatggagcat attgg
//
LOCUS       DATGBK010000416         1795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_74490, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000416 DATGBK010000000
VERSION     DATGBK010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74490"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..321)
                     /locus_tag="VKJ77_06015"
     CDS             complement(<1..321)
                     /locus_tag="VKJ77_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase family protein"
                     /protein_id="HMC44863.1"
                     /translation="MALGVHSEAGKLRTVMVCRPGLAHRRLTPANAASLLFDDVIWVD
                     KAIEDHDVFTGAMRERGIEVLEFHDLLAAICGDPIARDWILDRRIVEEEVGTGMLKEL
                     RAWLE"
     gene            complement(352..936)
                     /locus_tag="VKJ77_06020"
     CDS             complement(352..936)
                     /locus_tag="VKJ77_06020"
                     /inference="COORDINATES: protein motif:HMM:NF015656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44864.1"
                     /translation="MPEKNDLNSILFLLTPGLESSKAGTLLSALVRFKQLHDDNALLD
                     DVIPTFVAAHSQRYAGIGLRDLCADMHAFYRERNASRLQREQFRAAHFPEMAMTPQAA
                     MHELVRNNVELLPIDQIEGRIAATLGLVYPPGIAVVVSGERYTERAMPTLDYFRMFEE
                     GGNRFPGFENEIQGIYRKKETDGSVRLYTYVVNS"
     gene            complement(937..1719)
                     /locus_tag="VKJ77_06025"
                     /pseudo
     CDS             complement(937..1719)
                     /locus_tag="VKJ77_06025"
                     /inference="COORDINATES: protein motif:HMM:NF013444.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid decarboxylase"
BASE COUNT          339 a          563 c          531 g          362 t
ORIGIN      
        1 ttcgagccac gcgcgcaact ctttcagcat cccggtgccg acctcttcct cgacaatacg
       61 tcgatcgaga atccagtcac gcgcgatcgg gtcgccgcat attgctgcaa gcagatcgtg
      121 aaactccagt acctcgatac cccgctcgcg catcgctccc gtgaaaacat cgtggtcttc
      181 gatcgccttg tcgacccaga tgacatcatc gaacaaaagg gatgccgcgt tggcgggagt
      241 cagccgccgg tgtgcaagac caggacggca gaccatcacc gtgcgcagct tgcccgcttc
      301 cgaatgaacg cccagagcca tcagtgattc cccctcatgt cttcacgctc ttcatgaatt
      361 gacgacgtag gtataaagcc gcacgctgcc gtcggtctcc ttcttgcgat aaattccctg
      421 gatctcgttt tcgaaaccag ggaaccggtt cccgccttcc tcgaacatcc ggaagtaatc
      481 gagcgtcggc atcgcgcgct cggtgtagcg ctcgccggac acgaccaccg cgatgcccgg
      541 cggatagaca aggccgagcg ttgccgcgat tcgcccctcg atctggtcga tcggcaacaa
      601 ctccacgttg ttgcgcacga gttcgtgcat ggcggcttgc ggcgtcatcg ccatttcggg
      661 aaagtgcgct gcgcggaact gctcgcgttg cagacggctc gcattgcgct cacgatagaa
      721 cgcatgcatg tcggcgcaaa gatcgcgcag gccgattccc gcgtaacgct ggctatgtgc
      781 ggcgacgaag gtcgggatga catcgtcgag aagcgcgtta tcgtcatgca attgcttgaa
      841 gcgcaccagt gccgaaagca gcgtgccggc cttgctcgac tccagcccag gggtcagcag
      901 gaacaggatg ctgttgaggt cattcttctc gggcacgatg cgccgttcgc gcaggaactc
      961 ggcgagcacc gccgccggaa cgccgtgctc cgcgtattcg ccggtgcttc gatcgaaccc
     1021 gggtgtgatg agcgtcagct tgttcgggtc cgtcattgca tagcccggag caaggtggcc
     1081 gaagccatgc catttcgcgt ccggcacaag ctcccaataa cgcgggtcgc tcgcgagttc
     1141 gtccgtcgac aggtcttccc agcgttgcat gccgctcgcg gccgcaacct tgtccgggac
     1201 gaacggatcg aagaaccagc ggcgtgcggg gtccgtctcc gtcgcttcgt agtcgtgttt
     1261 cagcgcacgg atcttcttgc gcatctcgat cccgagcttg atcgtgtcgt cccacagcac
     1321 ttcgccggag cggcccttca tcatttgcgc gcccacatcg agcgaggcga acaacggata
     1381 gaacggcgac gtggacgagt gctgcatgaa agtctcgttg aagcgccggt gactgacctg
     1441 gcgacgctgg ccgtccaggt gcgcgtcctt cacgtggatc tgcgacgcct gcgagaaacc
     1501 tgcgagttgc ttgtgcgtcg actgcgtggc aaggatgccg ggcgcgttgg catctagtcc
     1561 ctcgatgccc atcgcgaaac gtcacttgaa caacggatgg aacttcatga agccggccca
     1621 ggcttcgtcg aagagaatgt attcgcacag atgcccgatc ttctcgatca gcatttgcgc
     1681 gctgtaaatc gtgccgtcgt aggtacattg ctcgatcacc gcaacacgaa acggccgctc
     1741 gcgctgccac gccttgggat cggtgatgag cttgttgtaa cggatgccgt cgcgg
//
LOCUS       DATGBK010000417         1761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_236495, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000417 DATGBK010000000
VERSION     DATGBK010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236495"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..408)
                     /locus_tag="VKJ77_06030"
     CDS             complement(<1..408)
                     /locus_tag="VKJ77_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HMC44865.1"
                     /translation="MAIKAVVFDFGGVLIDWNPEYVYTRLIPDATERRWFMDNVVAGD
                     WVLQQDAGQTIADGNAELIARFPEHEALIRAFYERWQEMLGGVLEDGVALVDKLEAAD
                     VPLFGLTNWSAETFPWAWERFPVLQRFREVVVSG"
     gene            complement(421..>1761)
                     /locus_tag="VKJ77_06035"
     CDS             complement(421..>1761)
                     /locus_tag="VKJ77_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase family protein P"
                     /protein_id="HMC44866.1"
                     /translation="RPGLPSESVYEHVAPQASVTRPEKLAEVRRVMREKGAQWHFIST
                     LDDLAWLFNLRGADVTYNPVFVAHALIGLDDAALFVGDGKIPNDLKASLLTENVRVEP
                     YSVVANALAALPAGSTLLIDPRRITFGSLEKVPAQVKIVEAVNPSTFAKSRKTASDAA
                     HIRATMEQDGAALAEFFAWFEDALGRETITELTIDEKLTAARARRPGFVTLSFATIAG
                     FNSNGAMPHYRATEASHSVIEGNGLLLIDSGGQYLSGTTDITRVVPIGTITAEHKRDF
                     TIVLKGTIALSRAHFPRGIRSPMLDAIARAPIWEAGADYGHGTGHGVGYFLNVHEGPQ
                     VISHYAPAEPYTAMEDGMITSIEPGLYRPGKWGIRIENLVMNEPAGKTEFGDFLKFET
                     LTLCPIDIRCIDLTLLRDDERAWLNDYHATVLERVSPHVSGAAKAWLEKRTQAI"
BASE COUNT          345 a          572 c          509 g          335 t
ORIGIN      
        1 ccccgacaca accacctcgc gaaaacgctg cagcaccggg aaccgctccc acgcccaggg
       61 gaaagtttca gcggaccagt tggtgagtcc gaacagcggc acgtccgctg cttcgagctt
      121 gtcgaccagt gcgacgccat cttcgagcac gccccccaac atttcctgcc agcgttcgta
      181 aaacgcgcgg atcagggctt catgctcggg aaacctcgcg atcagttcag cgttgccgtc
      241 ggcgatggtt tgcccggcgt cctgctgcag gacccagtcg cccgcaacca cgttgtccat
      301 gaaccagcgc cgttcagtgg catcgggaat cagccgggtg tacacatact cgggattcca
      361 gtcgatcaac acgccgccga aatcaaacac cactgccttg atcgccatgc gtggctccgt
      421 tcagattgct tgcgtgcgtt tttcgagcca cgctttcgcc gcgccggaca catgcggcga
      481 gacgcgttcg aggaccgttg cgtggtagtc gttgagccac gcgcgttcgt cgtcgcgcag
      541 cagggtcaag tcgatgcagc gtatgtcgat aggacacaac gtcagcgttt cgaacttgag
      601 gaaatcgccg aattcggttt tcccggcggg ctcgttcatt accaggtttt cgatccgaat
      661 accccatttc cccggccgat aaagccccgg ttcgatcgac gtgatcatgc cgtcttccat
      721 cgccgtgtac ggctcggccg gcgcgtagtg cgagatgacc tgcgggcctt cgtgcacatt
      781 caggaaatag ccgacaccat gtcccgtacc gtgcccgtaa tccgcaccgg cttcccaaat
      841 tggcgcgcga gcgatggcgt caagcatggg tgaacgaatg ccacgcggga aatgcgcccg
      901 cgacaacgcg atcgtcccct tcagcacgat ggtgaaatca cgtttgtgct ccgccgtgat
      961 cgtgccgata ggtacaacgc gcgtgatatc cgtcgtaccg ctcaggtatt gaccgcccga
     1021 atcgatcagc agcaagccat tgccttcgat caccgaatgc gaggcttcgg tcgcacggta
     1081 atgcggcatc gcgccattcg aattgaaacc agcgatagtc gcaaagctca acgtcacgaa
     1141 acctggccgg cgcgcacgcg cagccgtcaa tttttcgtcg atggtgagtt ccgtgatcgt
     1201 ctcgcgcccc agcgcatctt cgaaccacgc gaagaactcg gcgagcgccg cgccgtcctg
     1261 ttccatggtt gcgcggatat gcgcggcgtc ggacgccgtc ttgcgcgact tggcgaacgt
     1321 cgacgggttc accgcttcca cgatcttcac ttgcgccggc actttctcga gcgagccgaa
     1381 tgtgatccgg cgaggatcga tgagcaacgt ggagcccgcg ggcaaagcgg caagcgcatt
     1441 ggcaacgacg gaatacggct cgacgcgcac gttctccgtc agcagcgacg ccttgagatc
     1501 attgggaatc ttgccatcgc cgacgaacaa tgcggcgtca tccagtccaa tcagcgcgtg
     1561 cgcaacgaac acggggttat aggtgacatc ggcgccgcgc aggttgaaca gccacgcgag
     1621 atcgtcaagc gtcgagatga aatgccactg cgcgcccttc tcgcgcatca cgcgccgcac
     1681 ttccgccagc ttttccggac gcgtgacgct cgcctggggc gcgacgtgtt cgtacacact
     1741 ctccgatggc aaacccggcc g
//
LOCUS       DATGBK010000418         1929 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_74506, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000418 DATGBK010000000
VERSION     DATGBK010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74506"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..163
                     /locus_tag="VKJ77_06040"
     CDS             <1..163
                     /locus_tag="VKJ77_06040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006484674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HMC44867.1"
                     /translation="APLTVFIASYSSPEGLFWAKLSAASLLAVAPILIVGWLSQKQLV
                     RGLTFGAVK"
     gene            189..962
                     /locus_tag="VKJ77_06045"
     CDS             189..962
                     /locus_tag="VKJ77_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HMC44868.1"
                     /translation="MEPEMEREVDPVNLNLSQAGVPGVLAPAAAHDGHLLICDCDGVL
                     IDSEAIAGRVLVQEMQALWPGVDAEPIVTPLLGLRIETVLLRTAEALGRTLDAAQIDA
                     IRVVVEAAAVEGPAVDGIEAALAAISLRKACASNSFTSYVEAVLNRTGLVRFFGERLF
                     CADKVPNPKPAPDVYLAAARTMRVAPERCVVVEDSVTGVTAAAAAGMTVLGFLGGGHA
                     TEGQIDALKRAGASVVFEEMGQLPTLVGQWLQNASFELP"
     gene            1012..>1929
                     /gene="ugpC"
                     /locus_tag="VKJ77_06050"
     CDS             1012..>1929
                     /gene="ugpC"
                     /locus_tag="VKJ77_06050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004199035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HMC44869.1"
                     /translation="MASLNLRNINKRYEETEVIRSVNLDIADGEFVVFVGPSGCGKST
                     LMRMIAGLEDITGGDLTIDGVRVNDLQPAKRGIAMVFQSYALYPHMTLYDNMAFGLKL
                     AGTSKPEIDAAVQQAAKILHIDHLLDRKPKQLSGGQRQRVAIGRAITRKPKVFLFDEP
                     LSNLDAALRVKMRLEFARLHDELKTTMIYVTHDQVEAMTLADKIVVLSAGNVEQVGSP
                     NQLYHAPQNKFVAGFIGSPKMNFFNAEITQVLSDGVLVKYATGETQLTAVEPGNAKVG
                     DSVTVGIRPEHLHAGTAATVEHGVSAKTMA"
BASE COUNT          382 a          544 c          656 g          347 t
ORIGIN      
        1 agcgccgctg acggtgttca tcgcgtcgta ttcgagtcct gaaggcttgt tctgggcgaa
       61 gctttcggca gcttcactgc tggccgtggc gccgatcctg attgtcggct ggttgtcgca
      121 gaagcaactg gtgcgcggcc tgaccttcgg cgcggtgaaa tgagctggaa cccgagctgg
      181 aacccgaggt ggaacccgag atggaacgcg aggtcgatcc agtgaacctg aacttgtccc
      241 aagccggcgt accgggcgtg ctcgctccag ccgctgccca cgatgggcat ctgctgatct
      301 gcgactgcga cggcgtattg atcgacagcg aagcgattgc gggacgcgtg ctcgtgcagg
      361 agatgcaggc gctctggccc ggcgtggatg ccgagccgat cgtcacgccg ctgctcgggc
      421 tgcggatcga aacggtgctg ctgcgcacgg ctgaagcgct cggccggacg ctcgatgcag
      481 cccagatcga cgcaatccgg gtggtcgtgg aagccgcggc cgtggaaggt ccggcagtcg
      541 acggaatcga agccgcgctg gccgcgattt ccttgcgcaa ggcctgcgcg agcaacagct
      601 ttacgtcgta tgtggaagcc gtgctgaacc gcacgggcct cgtgcggttt ttcggcgagc
      661 gtctgttttg cgccgataaa gtgccgaacc cgaaacccgc gcccgacgtg tacctcgcgg
      721 cggcacggac catgcgggta gcgcccgaac gctgcgtggt ggtcgaagac agcgtgaccg
      781 gcgtcaccgc ggcggcggcg gcgggcatga ccgtgctcgg tttcctgggc ggcggtcatg
      841 caactgaagg acagattgat gcgctgaaac gtgctggcgc aagtgtcgtg ttcgaagaga
      901 tgggacaact tcccacgctc gtcgggcagt ggctgcaaaa cgcaagcttc gaactgccgt
      961 gagcctcttg ctcgcagaaa acgaagccaa gttaaagacg gagactccat catggcaagc
     1021 ctgaatctgc gcaacatcaa caagcgctac gaagaaacgg aagtgattcg cagcgtgaac
     1081 ctcgatatcg ccgatggcga gttcgtcgtg ttcgtgggcc caagcggttg cggaaaatcc
     1141 acgctgatgc gaatgatcgc ggggctggaa gatatcaccg gcggcgacct gactatcgac
     1201 ggcgtgcgtg tgaacgacct gcagccggcc aagcgcggga ttgcgatggt gttccagtcg
     1261 tacgcgctgt atccccatat gacgctgtac gacaacatgg cgtttggcct gaagctggct
     1321 ggcacgagta agccggaaat cgatgcagcg gtgcagcagg ccgcgaagat tctgcacatc
     1381 gatcatttgc tcgacaggaa acctaagcaa ctgtcgggcg ggcagcgtca gcgggtggca
     1441 atcggccgcg cgatcacgcg caagccgaag gtgttcctct tcgacgaacc gctgtccaac
     1501 cttgacgccg cgttgcgcgt gaagatgcgc ctggagttcg cgcggctgca cgacgaactc
     1561 aagaccacca tgatctacgt gacgcacgat caggtggaag ccatgacgct ggccgacaag
     1621 atcgtggtgt tgtcggcggg gaacgtggag caggtcggtt cgcccaacca gctttatcac
     1681 gcgccgcaga acaagttcgt ggcggggttc atcggctcgc cgaagatgaa cttctttaac
     1741 gccgaaatca cacaggtgtt aagcgacggc gtgctggtga agtatgcgac aggtgagact
     1801 caactgacgg cggttgagcc gggtaatgcg aaggtcggcg attccgtgac ggtcgggatt
     1861 cgtccggagc atctgcatgc agggaccgcg gcgacggtgg agcacggggt atcggctaag
     1921 acgatggcc
//
LOCUS       DATGBK010000419         2900 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_97666, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000419 DATGBK010000000
VERSION     DATGBK010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2900
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97666"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..172)
                     /locus_tag="VKJ77_06055"
     CDS             complement(<1..172)
                     /locus_tag="VKJ77_06055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC44870.1"
                     /translation="MTTPILEVRDISIRFGGVEALKHVSLQLLPGEVLALAGDNGAGK
                     STLIKIISGVYRA"
     gene            complement(169..1143)
                     /locus_tag="VKJ77_06060"
     CDS             complement(169..1143)
                     /locus_tag="VKJ77_06060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter"
                     /protein_id="HMC44871.1"
                     /translation="MDNSRLDKIALITKLWPWLFLAALLAFFEVYAQISAHRSFLFNA
                     YNLQSIGLAAAAPLLLAIGQTFVIITAGIDLSAGFVMGLAAVCVAQFTLFGSGSPWIL
                     IVSIPLTIVVCLIPGLVNGVLIAWLGVPAFIGTLGMYGVARGAGFLAAGSGMTVSVDN
                     AGLAWLGAGWTPVVLTGVLLLIMHLLLSKTRFGQYTYAIGGNPQSAVRAGINVKRHLL
                     VVYLIAAAFAAVGGIIYTARFAAGAANAGEPMLLDSIAAVVIGGASLFGGTGNVVGTL
                     IGALIIAVIQFGLVFVDVNAFWQFIVVGIVIILSVLIDQYKDRLGGAQ"
     gene            complement(1233..2213)
                     /locus_tag="VKJ77_06065"
     CDS             complement(1233..2213)
                     /locus_tag="VKJ77_06065"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44872.1"
                     /translation="MKRFVSRCMVAVSTIIVCSLPGLAQADAAHPVVALLPGVVDPFY
                     FTMHRGAERAAKEEKVELLFQVPKEWNTSEQVPILKAFIAKHPDVLLISPVDKQQLIG
                     PLKEAADAGIKVITVDTYIGDGHYQTGKGDADFPLSYIASDNLEGGRVAARSLAKAIG
                     DKGTVYCENNKPGISSTDARAEGFAEEMKKHPSITVLQTLYNEDDANQAAAHVAAVLA
                     RNPNLAGVFGANTFSGSGAAQGVKAAGKQGVVKVVVFDAVPGIDKQIKSGLVDIAIAQ
                     RPDEIGYYGVKYAADVIHGKKIPTLKSTGFEVLDKNNIDNPDMQKYIYSN"
     gene            2254..2616
                     /locus_tag="VKJ77_06070"
     CDS             2254..2616
                     /locus_tag="VKJ77_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012839529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44873.1"
                     /translation="MFYTLHGGGYRLLGSIGASGVSDHGNDTTSCIAADSAAVVWCLV
                     ISLNILAAHDDHRHRVFARRDEPHEVMAHHDGHLPDHAIAVHGARILCAYEVVGKRVW
                     IITEADRSATTLHFPEDY"
     gene            2652..2900
                     /locus_tag="VKJ77_06075"
                     /pseudo
     CDS             2652..2900
                     /locus_tag="VKJ77_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856846.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Sir2 family NAD-dependent protein deacetylase"
BASE COUNT          579 a          850 c          889 g          582 t
ORIGIN      
        1 cggcccggta gacgcctgaa atgatcttga tcaacgtcga cttgcccgca ccgttgtcgc
       61 cggcgagcgc cagcacttcg cccggcagca actgcaacga cacgtgcttg agcgcctcca
      121 cgccgccaaa gcggatcgag atgtcgcgca cctccaggat cggcgtggtc attgggcgcc
      181 tccgagacga tccttgtatt gatcgatcag taccgacagg atgatgacga tgcctactac
      241 gatgaattgc cagaacgcgt tgacgtcgac gaacaccagc ccgaactgga tcacagcgat
      301 gatcagcgcg ccgatcagcg tcccgacaac attgccggtt ccaccgaaca ggctcgcgcc
      361 accgatcacc acagcggcga tcgaatctag cagcatcggc tcaccggcgt tggcggcgcc
      421 tgcggcaaaa cgcgcggtat agatgatccc gccgaccgcg gcgaacgcgg cggcgatcag
      481 gtacaccacc agcaggtggc gtttgacgtt gatgccggcg cgcaccgcgg actgaggatt
      541 gccgccgatc gcgtaggtgt actggccgaa acgcgtcttc gagagcagca gatgcatgat
      601 caagagcagc accccggtca gcaccaccgg cgtccaaccg gcgccgagcc aggcaagacc
      661 ggcgttgtcc accgagaccg tcatgccgct gccggccgcg agaaagcctg caccccgcgc
      721 aacgccatac atgccgagcg tgccgataaa ggcgggtacg ccgagccacg caatcagcac
      781 gccgttgact aacccgggaa tcaggcagac cacgatggtg agcgggatgg acacgatcag
      841 gatccacggc gagccgctgc cgaacagcgt gaactgtgcg acgcagactg ccgctagtcc
      901 catcacgaag cccgcggata gatcgatgcc ggccgtgatg atcacgaagg tctggccgat
      961 ggccagcagc agcggagcgg cggcagcaag accaatcgat tgcaggttgt aggcgttaaa
     1021 aagaaacgac cgatgagccg agatctgcgc gtacacctcg aaaaaggcga gcagggcggc
     1081 caggaagagc cacggccata gcttggtaat cagcgcgatc ttgtcgagac gcgagttgtc
     1141 catggagtta tccgcgttgt catgagcaga acccgcgtgc gcggcggcgc acgcggtggg
     1201 gacgatctat gacttcagcc ggcctgcttt ggctagttcg aatagatgta tttctgcatg
     1261 tcgggattgt cgatattgtt tttatcgaga acctcgaagc ccgtgctctt gagggtggga
     1321 atcttcttgc cgtgaatgac gtcggcggcg tacttgacgc cgtagtagcc gatctcgtcc
     1381 gggcgctgtg caatcgcgat atcgaccagg ccgctcttga tttgcttgtc gatacctggc
     1441 accgcgtcga atacgaccac cttgacgacg ccttgtttgc ccgccgcctt gacgccttgg
     1501 gccgcgccgc tgccggagaa ggtgttggcg ccgaacacgc cggcgagatt cggattgcgc
     1561 gccaatactg ctgctacgtg agcagcggcc tggttagcgt cgtcttcgtt gtacagcgtt
     1621 tgcagcacgg tgatgctcgg gtgcttcttc atctcctctg cgaagccttc agcacgcgcg
     1681 tcggtgctcg atatgccggg cttgttgttc tcgcaataga ccgtgccttt gtcgccgatg
     1741 gctttggcca gcgagcgtgc tgcgactcgg ccgccttcga gattgtccga cgcgatataa
     1801 gaaagcggga aatctgcatc gcccttgccc gtctgataat gcccatcgcc tatataggtg
     1861 tcgacggtaa tgaccttgat gccggcgtcg gcggcttcct tcagcggtcc aatcagctgt
     1921 tgcttgtcga ctggcgaaat cagcagtacg tcaggatgtt tggcgataaa cgccttgagg
     1981 atcggcactt gctcactggt gttccattct ttgggaacct ggaacagcaa ctcgactttc
     2041 tcttccttgg cggcccgttc cgcgccgcga tgcattgtga agtagaacgg atcaaccaca
     2101 ccgggcagga gtgcaaccac cggatgggca gcatccgcct gcgcgagtcc cggtagcgaa
     2161 caaacgatga tcgttgagac ggcaaccata cagcgggaaa cgaaacgctt cattttgtct
     2221 tcctccagtt gagtccgact tgcgacgccc gatttgttct acacgctcca tggcggcggc
     2281 tatcggctgt tgggcagtat aggcgcgagt ggtgtcagtg accatgggaa tgacaccact
     2341 agttgcattg ccgctgatag cgcggcggtg gtgtggtgtt tagtgatttc gctaaatatt
     2401 ctggcggcgc acgacgatca tcgccaccgg gtttttgctc gccgtgatga accgcatgag
     2461 gtgatggcgc atcacgacgg tcatttgcct gatcacgcca ttgcggtgca tggcgcgcgc
     2521 attctctgcg cttatgaagt cgtcggcaag cgtgtatgga tcatcacgga agctgatcgc
     2581 agtgccacga cgttgcattt tccagaggac tactgatatg gcatcaacgt tcccggcaac
     2641 ttcgcatacg ggcatggggc ttctacgggc actgactcaa tctctaccgg tgcacggccc
     2701 cgcatcacgg ctggagcatc ctcggcaagt gggcggagcg gatgaagcac ggtgtgttcg
     2761 tgttcaccag caacgtggac gggcatttcc agaaaacggg attcgctgat gaacggattg
     2821 tcgagtgcca cggctcgatt cactggctcc agtgtgcccg cgcgtgccga ggtgacttgt
     2881 ggtcggcaga tgtcctgagc
//
LOCUS       DATGBK010000420         1548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213369, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000420 DATGBK010000000
VERSION     DATGBK010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213369"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1079
                     /locus_tag="VKJ77_06080"
     CDS             <1..1079
                     /locus_tag="VKJ77_06080"
                     /inference="COORDINATES: protein motif:HMM:TIGR04414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter strand-loop-strand
                     O-heptosyltransferase"
                     /protein_id="HMC44874.1"
                     /translation="HVRMTDLDTFNVLLDETVEANAVITSRRKYFVRFLLEVFDGQRL
                     VFSHAFDATNRKIRLRMQPLALGDSLAWLPVIDAFREQHQCELYMPLGEHLQPLFRDG
                     YPHLQIATDAELDSRDDAYYATYYLGLLKPFSERDHQPTDPRVSNMQDMMAYLLGVPC
                     EERKPNVVIADKTRTIAERYVCIATQSTAQCKYWNNPRGWPTLIEHLKTLGYRVLCID
                     RDKQYGNAKHMNTMPEGAEDFTGNRPLQERLSLLHHADFFIGLGSGLSWLAWAANTPV
                     VMISGFSHPSTEFCTPYRVINFHACNSCFNDTTAEFDARDFGWCPRRFDKPQPFQCTA
                     VITPEFVMRVVDKLIAERGLTQIF"
     gene            complement(1067..>1548)
                     /locus_tag="VKJ77_06085"
     CDS             complement(1067..>1548)
                     /locus_tag="VKJ77_06085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HMC44875.1"
                     /translation="LDDAGIEYDRNIQVGAMIEIPAAAIAVRLFLKRLDFLSIGTNDL
                     IQYTLAIDRADNAVAHLYDPLHPAVLHLIAFTLREAKAAGVPVSVCGEMAGDPAVTRL
                     LLGMGLTEFSMHPSQLLVVKQEILRADLKALQKPVADVLAAYEPAELLAALALLQKI"
BASE COUNT          343 a          472 c          430 g          303 t
ORIGIN      
        1 ggcacgtccg gatgaccgac ctggacacgt tcaatgtcct tctcgacgag accgtggaag
       61 ccaacgcggt gatcaccagc cggcgcaagt attttgtgcg tttcctgctg gaagtattcg
      121 acggccagcg actcgtgttc tctcacgctt ttgacgccac gaatcgaaaa attagattac
      181 gcatgcaacc actcgcgctg ggcgattcgc ttgcgtggct gccggtcatc gatgcattcc
      241 gcgaacaaca ccaatgcgag ctctatatgc cgctggggga gcatttgcag ccgctttttc
      301 gagacggtta tccgcatttg cagatcgcaa cagacgcaga actcgatagc cgcgacgacg
      361 cgtactacgc aacgtattac cttggtctgc taaagccatt ctctgaacgc gatcatcagc
      421 ccaccgatcc gcgcgtgagc aacatgcagg acatgatggc gtatctgctg ggcgtgccgt
      481 gtgaggaacg caagccgaat gtggttatcg cggacaagac gcgcacgatt gccgaacgtt
      541 acgtatgcat cgcgacgcaa tccacggcgc agtgcaagta ctggaacaat ccgcgcggct
      601 ggccaacgct gatcgagcat ctgaaaacgc tgggttatag agtgttatgc attgaccgcg
      661 acaaacagta cggcaacgcg aagcatatga acaccatgcc cgaaggcgcc gaggatttca
      721 ccggcaaccg gccgctgcag gaacgcctga gcctgttgca tcacgcggat ttttttatcg
      781 gattgggaag cggactgtcg tggctcgcat gggcagcaaa cacgcccgtg gtcatgatca
      841 gcggcttctc gcatccatcc accgagttct gcacgccgta tcgcgtgatc aactttcacg
      901 cctgcaacag ctgcttcaat gacacgaccg ccgagttcga tgcccgggat ttcggctggt
      961 gccctcgtcg cttcgacaag ccacaaccgt ttcaatgcac ggcggtgata acccctgagt
     1021 tcgtgatgcg cgtcgtcgat aaactcatcg ccgagcgcgg cctcactcag atcttctgaa
     1081 gcaatgccaa agcggcgagc aactccgccg gttcgtacgc ggcgagcacg tccgcaaccg
     1141 gcttttgcaa cgccttcaaa tccgcccgca ggatctcctg cttgaccacc agcaactggc
     1201 ttgggtgcat cgaaaactcg gtgagcccca tgccgagcag cagacgcgtc acggcgggat
     1261 cgccggccat ttcaccgcat acggaaaccg gaacgcccgc ggccttcgct tcgcgcaacg
     1321 tgaacgcgat caagtgcaaa accgcgggat gcaacgggtc ataaagatgc gcgacggcgt
     1381 tatccgcgcg atcgattgca agcgtgtact ggatcaggtc gttggtcccg atcgacagga
     1441 aatccagccg cttcaggaat agccgcacgg caatcgcggc cgccggaatc tcgatcatcg
     1501 cgccgacctg aatgttgcga tcgtactcaa tacccgcgtc gtcaagct
//
LOCUS       DATGBK010000421         1529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_97677, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000421 DATGBK010000000
VERSION     DATGBK010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97677"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..291)
                     /locus_tag="VKJ77_06090"
     CDS             complement(<1..291)
                     /locus_tag="VKJ77_06090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2917 domain-containing protein"
                     /protein_id="HMC44876.1"
                     /translation="MREISTSITFEIGDGETVPMKIGRSVRLIVQGAPVWATRSNDTE
                     DYWLVPGDSLKLRERERLWLSTEKGRTAQVVFTLAPRPDQRAIGWLARRFEKL"
     gene            414..1394
                     /locus_tag="VKJ77_06095"
     CDS             414..1394
                     /locus_tag="VKJ77_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HMC44877.1"
                     /translation="MDLRHLPALNALRAFEAAARHESFSRAADELFVTHGAVSHQIRA
                     LEADLGVTLFARDGKRVRLSDIGRQYATEVRATLSALADATRRLRSGERDRRLVVSML
                     SSFSARWVTPRIGGFIEEHPEINLELLSTNTLTDFTRDDVDVAIRFSSLGKYAGLHAE
                     ELLDEVFFPACSPNFNGGKLPRTPADMADAPLLRSHDELWKPWFDAAGLVDCPEPKRG
                     VLYEDSSNLLQAAIQGQGIALVRRSLAMHEIVAGRLVRLFNVDGPSPWNYYFVCPPAL
                     LGTQRVQVFRTWLFDEIMRFKQLYECTPAACDAPVQPLPVAPELRLKVPL"
     gene            complement(1378..>1529)
                     /locus_tag="VKJ77_06100"
     CDS             complement(1378..>1529)
                     /locus_tag="VKJ77_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF493 family protein"
                     /protein_id="HMC44878.1"
                     /translation="EFDIERIEVRPSSGGKYTGLTITVRAQSRAHLDDIYRALTGHPM
                     VKVVL"
BASE COUNT          295 a          501 c          433 g          300 t
ORIGIN      
        1 aagcttctcg aaccggcgcg ccaaccatcc aatcgcgcgc tgatcgggcc gcggcgccaa
       61 cgtgaacacc acttgcgcgg tgcgcccctt ttccgtgctc agccacaacc gttcacgctc
      121 acggagcttc aaggaatcgc ctggcacaag ccagtaatct tccgtatcgt tactacgcgt
      181 agcccacacc ggcgcaccct gaacgatcag cctgacactg cggccaatct tcatcggaac
      241 ggtttctcca tcaccaatct caaacgtgat gcttgtggat atttctcgca tgacagcctc
      301 cgccaaaaat cgtgttgatg gctataagat aggctcagca tgggtttaag caaaacgagc
      361 aattttcttc ggtttgtgag ataaattcac atacgcaact cgagtgaacg cccgtggacc
      421 tcagacacct tcccgccctc aacgcgctgc gcgccttcga agccgctgcg cgtcacgaaa
      481 gcttttcacg cgccgccgac gaactgttcg tcactcacgg cgccgtcagc catcagattc
      541 gcgcgctcga agccgatctc ggcgtcaccc tcttcgctcg cgacggcaaa cgcgtgcgcc
      601 tgtcggacat cggccgccaa tacgccaccg aggtccgcgc cacgctctcc gccctcgccg
      661 acgccacgcg gcgactacgc tcgggggagc gcgaccggcg gctggtggta tcgatgctgt
      721 cgtcgttttc agcgcgctgg gtgacgccgc ggatcggcgg gtttatcgag gagcatccgg
      781 aaatcaacct ggaactgctc tcgaccaaca ccctgaccga tttcacccgc gacgacgtgg
      841 acgtcgccat ccgcttcagc agcttgggca aatatgccgg attgcacgcg gaagaattgc
      901 tcgatgaagt gtttttcccg gcgtgttcgc cgaacttcaa cggcggcaag ctgccgcgaa
      961 cgcccgcaga tatggccgac gcgccgctgc tacgctcgca cgacgagctg tggaagccat
     1021 ggttcgacgc ggcggggctc gtggattgtc cagagccaaa gcgcggcgtt ttatacgagg
     1081 attcgtcgaa tttgctgcag gcggccattc aaggccaggg aatcgcgctc gtgcgccggt
     1141 cgcttgccat gcatgaaatc gtggcaggcc ggctggtgcg gctgttcaac gtcgacgggc
     1201 cgagcccgtg gaattactac ttcgtgtgcc cgcccgcgct gctggggacg caacgcgtgc
     1261 aggtctttcg cacctggctc ttcgatgaaa tcatgcgctt caagcaactc tacgagtgca
     1321 cgccggctgc ctgcgatgca cccgtgcagc cactgccggt cgcgcccgag ctcaggctca
     1381 aagtaccact ttgaccatcg ggtgaccggt cagcgcacga tagatatcgt cgagatgtgc
     1441 gcggctttgc gcccgcacag taatggtcag gccagtgtat ttgccgcccg acgacggacg
     1501 cacttcaata cgctcgatgt caaactcgt
//
LOCUS       DATGBK010000422         2367 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_282757, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000422 DATGBK010000000
VERSION     DATGBK010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282757"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..181)
                     /locus_tag="VKJ77_06105"
     tRNA            complement(106..181)
                     /locus_tag="VKJ77_06105"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(146..148),aa:Phe,seq:gaa)
     gene            complement(283..1002)
                     /gene="esaR"
                     /locus_tag="VKJ77_06110"
     CDS             complement(283..1002)
                     /gene="esaR"
                     /locus_tag="VKJ77_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor EsaR"
                     /protein_id="HMC44879.1"
                     /translation="MATILVVDDEMGIRELLSEILSDEGHVVETAENAQHAREYRLRQ
                     APDLVLLDIWMPDTDGVTLLKEWAAQGKLTMPVIMMSGHATIDTAVEATKIGALNFLE
                     KPIALQKLLKAVEQGLARGTAAAPIANTAMRPALPVSGSTVPASAALPVASSLNLTSG
                     DAGALGAAAGPAGATASISFDIPLRDARDAFERAYFEYHLARENGSMTRVAEKTGLER
                     THLYRKLKQLGVDLGKNKSEA"
     gene            complement(1003..>2367)
                     /locus_tag="VKJ77_06115"
     CDS             complement(1003..>2367)
                     /locus_tag="VKJ77_06115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC44880.1"
                     /translation="AEGDYTPKREVKSRDELGFLTQSFNAMTRQLSEARAAVENNRIA
                     LEHSKAYLESILANLTAGVFVFDRQFRLTTANRGAERIFRQPFNASLNLPLEQIGVLS
                     EFGAMVRKAFADRDAAASGSGRPIGDRGHWQQQLAVPVPGETDPLTLLVRGTQLLTLT
                     ESDTDDAETTGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPIQLSAERLQM
                     KLADKLSPADADVLKRGATTIVNQVQAMKQMVDDFREYARTPPAVLGNLQLNDLVAEV
                     LTLYGIEEGKSHITVELTKLPVIRGDATQLRQVIHNLLQNAQDAVADVAEPRVLLETK
                     TVEYGDPDASGHARVAVRLTVSDNGSGFPARILSRAFEPYVTTKAKGTGLGLATVKKI
                     VDEHGARIDIRNRSKTPDVIEGAQISILFLQLAEDSAEPGATPPSAAASHGTTKALVQ
                     TRAA"
BASE COUNT          445 a          781 c          655 g          486 t
ORIGIN      
        1 ccggcaatga ctccaactgc tgctaacacc gccccgctaa gtccgaacga aaaccaatga
       61 aaaatgcccg aaaaccttgc ggtttccggg cattttttgc aactgtggtg gcctgggacg
      121 gaatcgaacc atcgacacgc ggattttcaa tccgctgctc taccaactga gctaccgggc
      181 cacgaagaac gaaagtatat caaaggggat tatgtcgctc aagtgctttt tggcaccttt
      241 ttactgtaac gatccttctt caccccctcc ccgccccgcc agtcatgcct cgctcttgtt
      301 cttgcccaga tccacaccga gctgcttgag cttgcgatac aagtgcgtac gctccagtcc
      361 cgtcttctcc gccacccgcg tcatgctgcc gttctcacgc gccaggtgat actcgaagta
      421 cgcgcgctcg aaggcatcgc gtgcgtcacg taaggggatg tcgaaggaga tggatgcagt
      481 tgcgcctgcc ggacctgccg cggctcccag cgcgccggca tcgccgctcg tcagattcaa
      541 cgacgaagcc accggcaacg cagccgaagc cggcaccgtc gaaccgctca ccggcaacgc
      601 cggccgcatg gccgtgttcg cgatcggcgc ggcagccgtg ccacgcgcaa gaccctgctc
      661 gaccgccttc agcaattttt gcaacgcgat cggcttctcg aggaaattga gcgcaccaat
      721 cttcgtggct tcaaccgccg tatcgatagt cgcatggccc gacatcatga tcaccggcat
      781 ggtgagcttg ccctgcgccg cccactcttt cagcagcgtc acgccgtcgg tatcgggcat
      841 ccagatgtcg agcagcacga gatccggcgc ctgccgcaac cgatactccc gcgcatgctg
      901 cgcattctcc gccgtctcca ccacgtgacc ttcgtcgctc aggatctccg agagcaattc
      961 ccggataccc atttcgtcgt ctaccaccag gatggttgcc atttacgctg cccttgtctg
     1021 cactaatgct tttgtcgttc cgtggctcgc cgccgccgag ggcggtgtcg cgcccggttc
     1081 ggcggaatct tccgcgagtt gcaggaacaa aatcgagatc tgcgcgcctt cgatcacgtc
     1141 aggggtcttc gaacgattgc ggatgtcgat gcgcgcgcca tgctcgtcga cgatcttctt
     1201 taccgttgca agacccagac ccgtgccctt cgccttcgtt gtcacataag gctcgaatgc
     1261 gcgcgagaga attcgcgcgg gaaaaccaga accgttatcc gataccgtca accgcaccgc
     1321 gacgcgggca tgtccggagg catcggggtc gccatattct actgtcttcg tttcaagcag
     1381 cacgcgcggt tcggccacat cggccaccgc atcctgcgcg ttctgcaaaa gattgtggat
     1441 cacctgccga agctgcgtgg catcgccgcg aatcaccggc aattttgtca gctccacggt
     1501 gatatgactc ttgccctctt caatgccgta caacgtcagc acttcggcca caagatcgtt
     1561 gagctgcagg ttgcccagga cagccggcgg cgtacgcgcg tattcgcgga agtcgtcgac
     1621 catctgcttc atcgcctgaa cctggttcac gatggtggtg gcaccgcgct tgagcacgtc
     1681 ggcgtctgcc ggagagagct tgtcggccag cttcatctgc agccgttccg ccgatagctg
     1741 gatcggcgta agcggattct tgatctcatg cgcgagccgc cgcgccactt cgccccatgc
     1801 gaccgaacgc tgcgccgaga tgacgtcgga gatgtcgtcg aatacgacta cgtagccagt
     1861 tgtttcggcg tcgtcggtat cgctttctgt cagtgtcagc aactgcgtac cgcgtaccag
     1921 caaggtcaat ggatcagtct cgccgggtac cggcacggcg agttgctgtt gccaatgccc
     1981 acggtcgcca ataggccggc cgctgccgct tgccgctgca tcgcgatccg caaatgcctt
     2041 gcgcaccatc gcgccaaact cggacaacac gccgatctgt tcaagaggca gattcagcga
     2101 cgcattgaac ggctgccgaa agatccgctc ggcgccgcga ttcgccgtgg tgaggcggaa
     2161 ctgccggtcg aacacgaaca cgccggcggt caggttcgcg agaatgctct caaggtacgc
     2221 cttcgaatgt tcgagtgcga tccggttgtt ctcgaccgcc gcacgcgcct cggacaattg
     2281 ccgcgtcatc gcgttgaacg actgcgtgag gaaaccgagt tcgtcacgcg acttcacctc
     2341 gcgcttaggc gtgtaatcgc cctcggc
//
LOCUS       DATGBK010000423         2300 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_236538, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000423 DATGBK010000000
VERSION     DATGBK010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2300
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236538"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..872
                     /locus_tag="VKJ77_06120"
     CDS             <1..872
                     /locus_tag="VKJ77_06120"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004200776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HMC44881.1"
                     /translation="TPAPVPPIAAIPKPRPIVKPAPPTALANQDDSSSSSTTDDYGFA
                     NPKSNKSGTTRLLTVAIDPGHGGEDPGAIGSGGTYEKHIALDVAKKLRAKIDAQPNMR
                     AMMTRDADFFVPLNVRVQKARRVGADLFVSIHADAFTTPSARGSSVFALSDHGASSAA
                     ARWMANKENSSDSIGGINVTTQDASVNRALFDMSTTAQIRDSMRYGNFVLNEIGDINK
                     LHKGSVEQAGFAVLKAPDIPSILVETAFISNPEEEQRLNDDAYRDQMATAIMKGIKRY
                     FAANPPLAKSRMT"
     gene            complement(1105..1383)
                     /locus_tag="VKJ77_06125"
     CDS             complement(1105..1383)
                     /locus_tag="VKJ77_06125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44882.1"
                     /translation="MTKTTLLIAVAAGLFATAGAYAQTSSGNSSNAASMPTASPMQSA
                     DTSDGASAPMKKHHKMHKQSSTGQSANPSKTPAVETGASAATENGQSK"
     gene            1603..>2300
                     /locus_tag="VKJ77_06130"
     CDS             1603..>2300
                     /locus_tag="VKJ77_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HMC44883.1"
                     /translation="MSSTIQAFLKPHQHDVGNLMVRRVLPALATRTIGPFIFFDHIGP
                     ATLVPGVGLDVRPHPHIGLATVTYLFEGAIMHRDSVGSVQKISPGDVNWMTAGGGIVH
                     SERTPDEERAAGQNMHGIQTWVALPVAEEECAPSFEHHPAATLPQLERNGVTLRVIAG
                     SAFGETAPTATFSPTLYVAAQFSANSAVTLDTEHEERGVYLLEGDLSIDGDVLPAGQM
                     AVLKPGFAADLRSA"
BASE COUNT          450 a          709 c          711 g          430 t
ORIGIN      
        1 caacgcccgc gcccgtcccg cctattgcag cgattccgaa gccccgtccc atagttaagc
       61 cggcgccgcc cacggcgttg gcaaaccagg acgactcgtc cagcagcagc acgaccgacg
      121 actacggttt cgccaacccg aagagcaaca agtccgggac gacgcgcctg ctcacggttg
      181 cgatcgaccc gggccacggc ggcgaagatc cgggcgcgat cggcagcggc ggaacgtacg
      241 agaagcacat tgccctcgat gtcgcgaaga agctgcgcgc gaagatcgat gcgcagccga
      301 acatgcgcgc gatgatgacg cgcgacgccg acttcttcgt gccgctgaac gtgcgtgtgc
      361 agaaggcgcg tcgcgtgggc gcggacctgt tcgtttccat tcatgccgat gcgttcacca
      421 cgccctcggc gcggggttcg tcggtgttcg cactctccga tcacggtgca tcgagtgcgg
      481 ccgcgcgctg gatggcgaac aaggaaaact cgtcggactc cattggcggg atcaacgtga
      541 cgacgcagga cgcgagcgtc aaccgggcgc tgttcgacat gtccaccacc gcgcagattc
      601 gcgactccat gcgctatggc aatttcgtgt tgaacgagat tggcgacatc aacaagcttc
      661 acaagggctc ggtggaacaa gccggtttcg cggtgttgaa agcaccggat attccatcga
      721 tcctggtgga aaccgcgttt atcagtaacc ccgaagagga gcagcgcctg aacgacgacg
      781 cttaccgcga ccagatggct accgcgatca tgaagggcat caagcggtat tttgcggcca
      841 acccgccgct cgcaaagagc cgcatgacgt aaagggacag gttcgttcgc gctggcctgc
      901 aggcgggtta aggctggtgc gggcgaacgc attcagacac tttagcggac gattttgcaa
      961 atttgttgta caaactcacg tcatagccca ttcggacgag gcgatcccgc gtcacatgcc
     1021 atagaaaaaa gcgctcgcgc cggtcagggc gcaagcgctt tttccttgaa acattagctc
     1081 tcgaaacgcc cgcggcgcca ccacctactt gctttgacca ttctctgtcg cggcactggc
     1141 gcccgtttct acggcaggcg tcttgctcgg gttggccgac tggccggtcg acgactgctt
     1201 gtgcatcttg tgatgctttt tcatcggcgc ggatgcgccg tcggacgtgt cggcgctttg
     1261 catcggcgat gcggtgggca tggacgccgc gttcgacgaa ttaccgctcg atgtttgggc
     1321 ataagcaccg gcagtggcga aaagtccggc ggcaacggcg attaaaagtg tggtcttagt
     1381 cattgtgaaa ctcctgtcta ggctaggcgg aaaagtccat cggaaaggtc catcgagacg
     1441 gtcatcgaaa gttgcacggg tcccacggtc gccaagctcg tcagcgtcgc catgatccgc
     1501 tttgaacatc ggccgaatgg cctatcgctc ggataccgct tgcgtgctgc cacacggcgc
     1561 ccagtagaat tgcatgtccg agtacgcaat ccggacgtcc ccatgtcttc cacaatccaa
     1621 gcgtttctca agccgcatca gcacgacgtc ggcaacctca tggtgcgtcg ggtactgcct
     1681 gcgctggcca cccgcactat cggaccgttc attttcttcg accatatcgg ccctgcaacg
     1741 cttgtgcctg gggtagggct ggacgtgcgc ccccatccgc acataggcct cgcgaccgtc
     1801 acgtatctgt tcgagggggc gatcatgcat cgcgacagcg tcggctcagt ccagaagatc
     1861 tcgcccggcg acgtgaactg gatgacggcc ggcggtggca tcgtgcattc ggaacgcacg
     1921 cccgacgagg aacgcgccgc cgggcagaac atgcacggca tccagacgtg ggtcgcgttg
     1981 ccggttgcag aagaggaatg cgcgccgtcg ttcgagcatc atccggccgc gacgctgccg
     2041 caactcgaac gcaatggtgt gacgttgcgg gtgatcgccg gcagcgcatt cggagaaacg
     2101 gcgccgaccg ccacgttctc ccccactctc tatgtcgcgg cgcaattttc ggcgaacagc
     2161 gcggtgacgc tcgatacgga acatgaggaa cgcggtgttt atctgctgga aggcgatctc
     2221 tccattgacg gagacgtgct gcccgcaggc cagatggcgg tgctgaagcc ggggtttgcc
     2281 gccgatctgc gcagcgcgga
//
LOCUS       DATGBK010000424         1897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213423, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000424 DATGBK010000000
VERSION     DATGBK010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213423"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..763)
                     /locus_tag="VKJ77_06135"
     CDS             complement(<1..763)
                     /locus_tag="VKJ77_06135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006760034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HMC44884.1"
                     /translation="MSEHTSINRQILLVSRPQGAASVDNFKLVETPLEPLAEGQVRVR
                     NHFLSLDPYMRGRMDDSKSYAASQPLNEVMIGGTVGEVVESKNPKFAIGDKVVGSYGW
                     QEFGTSDGKGLRKVDDTHIPLSTYLGPVGMPGVTAWLGLNKIIAPKTGETVVVSAASG
                     AVGSVVGQLAKAAGCRAVGIAGGADKCRYVTETLGFDACIDYKAGNLHDDLKAALPNG
                     ADGYFENVGGEILDAVLSRMNAFGRIALCGMIASYD"
     gene            complement(825..1289)
                     /locus_tag="VKJ77_06140"
     CDS             complement(825..1289)
                     /locus_tag="VKJ77_06140"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006478599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HMC44885.1"
                     /translation="MTDFSTLPESPFVDSLGVQLISAEDGASEVLLPLTATHMNTWGI
                     AHGGVTMTLADVALAMAARSLADNGIGVVTVEMKVNFMQPGRGELRAFARVLHRSTTM
                     AYCEGEIRDSEGHFVAKALGTFKYMRKLAVGRDIAQQRLRSDPSATPGPSDA"
     gene            complement(1294..1596)
                     /locus_tag="VKJ77_06145"
     CDS             complement(1294..1596)
                     /locus_tag="VKJ77_06145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dabb family protein"
                     /protein_id="HMC44886.1"
                     /translation="MLRHIVMWKLKESAEGGTRAENIVKLKARLETCRSIVSGQGHFE
                     VGVAQPGYEATYDVVLVSDFDNPEALQAYQVHPKHLAIKDFVAAVRESSQCIDYEV"
BASE COUNT          358 a          565 c          578 g          396 t
ORIGIN      
        1 cgtcgtaact cgcgatcatc ccgcacaacg caatgcggcc gaacgcgttc atgcgcgaca
       61 acacggcatc gagtatctcg ccgccgacgt tttcgaagta cccatcggcc ccgttgggca
      121 acgccgcctt gaggtcgtca tggaggttgc cggccttgta gtcgatgcat gcgtcgaaac
      181 cgagcgtctc ggtgacgtag cggcatttgt ccgcgccgcc cgcgatgccc accgcgcggc
      241 agcctgctgc tttcgccaac tggccgacca cgctccccac cgcgccgctc gccgcgctga
      301 caacgaccgt ttcacccgtt ttcggcgcga tgatcttgtt gagcccaagc catgcggtca
      361 cgccgggcat gccgaccggg ccgagatacg ttgaaagcgg gatatgggtg tcgtcgactt
      421 tacgcaagcc cttgccatcc gatgtgccga attcctgcca gccgtacgac ccgaccactt
      481 tgtcgccgat cgcaaacttc ggattcttcg attccaccac ttcacccacc gtcccgccga
      541 tcatcacctc gttgagcggc tgcgacgcgg cgtacgactt cgagtcatcc atacggccgc
      601 gcatgtacgg atcgagcgag aggaagtgat tgcgcacgcg cacttgcccc tcggccagcg
      661 gctcgagcgg ggtctcgacg agtttgaaat tatcgacgct tgctgcgcct tgcgggcgcg
      721 aaacgaggag gatctggcga ttgattgaag tgtgttctga catcgtgata ctcctgtgcg
      781 gtccagggat aaaccagggc gcgcggcgcg ctctggaagc ggcgtcaggc gtcgctggga
      841 ccgggtgtgg cggacggatc cgaacggaga cgttgctgcg caatgtcgcg gccgacggcg
      901 agcttgcgca tgtatttgaa ggtgccaagc gcttttgcga cgaagtggcc ttcgctgtcg
      961 cggatttcgc cttcgcaata cgccatggtg gtcgagcggt gcaacacgcg ggcaaacgcg
     1021 cggagttcac cgcggcccgg ttgcatgaag ttgactttca tttcgacggt gaccacgccg
     1081 atgccgttgt cggcgagact gcgcgcggcc atcgcgaggg cgacgtcggc aagcgtcatg
     1141 gtcacgccgc catgtgcaat gccccaggtg ttcatatgcg tggcggtcag cgggagcagt
     1201 acttcgcttg cgccgtcttc ggcggagatg agctgtacgc cgagtgaatc gacgaacggg
     1261 ctttcaggga gcgtggagaa atcggtcatg gtcttagact tcgtaatcga tgcattgact
     1321 cgactcacgt accgctgcaa cgaagtcctt gatcgccagg tgcttgggat ggacctgata
     1381 ggcctggagg gcttccggat tgtcgaaatc ggagacgagg accacgtcgt acgtggcttc
     1441 gtagccgggt tgcgctacac caacttcgaa gtggccctga cctgaaacaa tgctgcggca
     1501 ggtttcgagt ctggctttca gcttgacgat gttttcagcg cgagtgccgc cctcggcgct
     1561 ttccttcaac ttccacatga cgatgtgtct tagcaacttg ctcaccttga ttggttagtg
     1621 ttcaacggcg tttatcccgg cgcatgggtc gggccgatat cggaaaacgc aagaccgggc
     1681 gttgatacac tttgtcctac gtagcgatat gcgaacgaac ccgcgaacga accgcagcgg
     1741 atcagcccga taaattaaca gattcctgga gtctttacct gagggttaaa cccatgatca
     1801 ctgctcgccg atgaagccga ttctgtcccg ggcatggcca acaaaaaaag ccaccggttt
     1861 gagcgcgcaa tttctgagtg ggccacattc cggcagt
//
LOCUS       DATGBK010000425         2184 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_120899, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000425 DATGBK010000000
VERSION     DATGBK010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120899"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1414)
                     /locus_tag="VKJ77_06150"
     CDS             complement(<1..1414)
                     /locus_tag="VKJ77_06150"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phosphoacceptor
                     domain -containing protein"
                     /protein_id="HMC44887.1"
                     /translation="MDALPPEETIRSAVDRSVSRLRLQHEIAVQFATSVLRVHSANVL
                     LDEACKAVSAGLHSRFAKVLRYQPESETFVLEAGVGWDAADIGTTELGADDASPAGHA
                     FVSGRPVLSNHLGTEHRFRTPELLARHGIKRAINVPIRGIPETFGVLEADSSDDEDFS
                     ETDIVFLEAIANVISMSRERLAAESQTGADELFSTSVLNASTDCIQVLSLDGGIEFMN
                     DNGLAALSIDDFAEVGGTTCADLWPDDQRPKVEQALAKSAGGEPVRFEGPCPTRAGDA
                     RWWDVSVAPILDTDERVKRIVLTMRDVTERHENEEKLAALVSSQETQLGNSALMMKEV
                     HHRVRNSLQLVQTLLALQANLAGDKSVATHLQAAATRVRTVGSVHHRLYQDDGAEATD
                     ATSYLRGLTADLAELAAGREVSLEGESIVLPAARLAPLGLVTAELVTNALKYGRGTVS
                     VKLERSDNAVLLTVEDEGDGF"
     gene            1674..>2184
                     /locus_tag="VKJ77_06155"
     CDS             1674..>2184
                     /locus_tag="VKJ77_06155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HMC44888.1"
                     /translation="MLDVASQPVVPLRGKPLSHHEQQQRNPGVPLELSWLDSLRVNQS
                     AVARRVSTLGTRRAVKKDAQAAWLLKAITCIDLTTLNGDDTAARVERLCAKARRPIRD
                     DLLESLGMPPGSIKTGAVCVYHRFVGTAVAALAGSGIPVAAVSTGFPAGLIPHPLKLK
                     EIEASVKDGA"
BASE COUNT          385 a          708 c          658 g          433 t
ORIGIN      
        1 gaaagccgtc tccctcgtcc tccacggtca gcagcacggc attgtcggat cgttccagct
       61 tcacgctcac cgtcccccgc ccgtacttga gcgcgttggt cacgagttcc gctgtcacca
      121 gcccgagcgg cgcgagacgt gcggcgggca gcacgatcga ctctccttcc agcgatacct
      181 ctcgccccgc cgccagttca gccagatcgg ccgtcaggcc acgcaagtaa ctggtggcat
      241 ccgtcgcttc cgcgccatcg tcctgataga gccggtgatg caccgacccg accgtgcgca
      301 cgcgtgtggc tgctgcctgc aaatgcgtgg caacggattt atcgccagcg agattcgcct
      361 gtagcgcaag cagcgtttgc acaagctgaa ggctgttgcg aacccggtga tgaacctcct
      421 tcatcatcag cgccgaattg ccaagctgcg tctcctggct cgacacgagt gccgcgagtt
      481 tctcctcgtt ctcgtgccgc tcggtgacat cgcgcatggt cagcacgatg cgcttcacgc
      541 gctcatcggt atcgagaata ggtgccaccg acacatccca ccagcgggca tcgcccgcac
      601 gggtcgggca gggaccttcg aaccggaccg gttcgccgcc cgcggatttc gccagtgcct
      661 gctcgacctt cgggcgttga tcgtcgggcc acaggtcggc gcacgtcgtg ccgccgacct
      721 ccgcgaagtc gtcgatgctc agcgccgcca ggccattgtc gttcatgaat tcgataccgc
      781 catccagcga cagcacctgg atgcagtcgg tgctcgcgtt cagcacgctg gtggagaaca
      841 gttcgtcggc gccagtttgc gattccgcgg ccagccgttc gcggctcatg gagatgacgt
      901 tcgcgatcgc ttccaggaat acgatatctg tttcgctgaa gtcctcgtcg tcggagctat
      961 cggcttcgag cacgccgaag gtttcgggaa taccacgaat ggggacgttg atggcacgct
     1021 tgatgccgtg ccgggccagt agttcgggcg tgcggaaacg gtgttcggtg ccgaggtgat
     1081 tcgacaacac cgggcggccg ctgacgaatg cgtggccggc ggggctggcg tcgtcggcgc
     1141 cgagttcggt cgtgccgatg tccgctgcgt cccagccgac gccggcttcc agcacgaagg
     1201 tttcgctttc gggttgatag cgcagcacct tggcgaagcg cgagtgcaat ccagccgata
     1261 cggctttgca ggcttcgtcg aggagcacgt tggcactgtg tacgcgtagc acggacgtcg
     1321 cgaattgcac ggcgatctcg tgctgcaggc gcagacggct taccgaccgg tcgacggcac
     1381 tgcggatggt ttcttcgggt ggcaatgcat ccatcgggtt ctccttgacc gcggtgtcgc
     1441 ctacgctttc ttccggcgat tcatgcttag gggtcgattc taaccgtgga gattaaaagg
     1501 ccacagattt gggcggggag gtcattggcg tcgttgctgc tccaacccgc caccaaagtg
     1561 cgaacgacac ctctctcggt ataatcccga atgttataat cgtaacaaca aggtgttaga
     1621 ataatgcatc gattaaccgg aaaatgttgt gcgctgcaca accggccatg ctcatgctcg
     1681 atgttgcttc ccaacctgtt gtccccttgc gcggcaaacc gctctcccat cacgagcaac
     1741 agcagcgcaa tcccggcgtg ccgctggagc tctcctggct agatagcctg cgggtcaatc
     1801 aatcagcggt cgcccggcga gtcagtacgt taggcacccg ccgtgcggtt aaaaaagacg
     1861 cacaagccgc ctggctgctc aaggccatca cgtgcatcga cctgaccacc ctcaacggcg
     1921 acgataccgc cgctcgcgtc gaacgcctct gcgccaaagc ccgccgtccg attcgcgacg
     1981 atctactcga gtcgctaggc atgccgcccg gctccatcaa gaccggcgcc gtgtgcgtgt
     2041 atcaccgctt cgtaggcaca gccgtcgccg cgcttgccgg tagcggcatc ccggtcgcgg
     2101 ctgtatccac aggttttccc gccggcctga tcccgcatcc gctgaagttg aaagagatcg
     2161 aggcgtcggt gaaagacggc gcgg
//
LOCUS       DATGBK010000426         4502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_190504, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000426 DATGBK010000000
VERSION     DATGBK010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4502
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190504"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..385)
                     /locus_tag="VKJ77_06160"
     CDS             complement(<1..385)
                     /locus_tag="VKJ77_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HMC44889.1"
                     /translation="MSYQNRQWFYVKRPEGRVSDEHYALRESELDADLSSNEVLIRAR
                     IVSVDPYIRIQQHERNTYDVPHPLGIVQRSGVVGEVVASASPLFKQGDWVSAYSGWQL
                     YAKCHHSELTKLNPDRAPVSTALGVL"
     gene            complement(560..1615)
                     /locus_tag="VKJ77_06165"
     CDS             complement(560..1615)
                     /locus_tag="VKJ77_06165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlxA family transcriptional regulator"
                     /protein_id="HMC44890.1"
                     /translation="MFGELAGLTKNEAKLTMAKKIAPVEIALLMYPGCQLAAVHGLTD
                     LFHVAERLFQRSTQQSKSVEHPVFSVSHIQFDAGNSAPPWADGAPDFVIIPPALGTMP
                     TGEAFAPIVKWLSDCHAKGAVLASVCVGTFLLAQTGLLARRSATTHWSQAQLLAENFP
                     EIHVDGDKLLIDDGDILTAGGVMAWADLGLRIVDRLLGSAAMLETARFLLVDPPGREQ
                     RYYSAFSPKLNHGDKTILEVQHWLQQDGDRHPTVALMAQRAGLEERTFLRRFQKATGL
                     RPTEYCQHLRVGKAREMLETSQQSFDQVAWKVGYEDVGSFRKIFIRLTGLSPGDYRKR
                     FRTPGEGASLTLRAKQA"
     gene            1681..2229
                     /locus_tag="VKJ77_06170"
     CDS             1681..2229
                     /locus_tag="VKJ77_06170"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HMC44891.1"
                     /translation="MTKRALIIVDLQNDYFPGGKWTLTGIEAAAANAARLLQSARAAG
                     HLVVHVRHESPKSDAAFFVAGSEGAAIAPQVINKEGEHVVLKHQINAFRDTDLKNILD
                     TNGIEEVVIAGAMSHMCVDAITRASVDFGYKATVIHDAVATLDMEFGGVKVPAAHVHA
                     AFMAALGFAYATMLSTDEYINA"
     gene            complement(2294..3190)
                     /locus_tag="VKJ77_06175"
     CDS             complement(2294..3190)
                     /locus_tag="VKJ77_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC44892.1"
                     /translation="MDDRKLLARTPTLAIAYTESGPADGPPVMLVHGWPDAERAWSPV
                     AARLAAAGFRTIVPDLRGAGNTRFLSAQTVRDGSGVALAQDVIDLADVLRIDRFDVIG
                     HDWGARVAYTLAALFPGRIGRIAGLALAFQPKGAFELPHFSQARKFWYQWFMTLDAAP
                     AAVAADPKGFARLQWDTWSPPGWFDDEEFALTAAAFDNPDWVPITLNGYRRRWRGGEV
                     SDPAYAALREKLATIDQLSTPTLMIQGGTDFCDEPASSQGMEGHFTGGYRRVVLDGVG
                     HFPPREAPDAVADLVIAHLRGE"
     gene            3529..4293
                     /locus_tag="VKJ77_06180"
     CDS             3529..4293
                     /locus_tag="VKJ77_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012425914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC44893.1"
                     /translation="MQTPEIKPGPKESEGVAVIDRACAILFAFRPDDGSLTLAELAAR
                     TGLYKSTLLRLAGALIQHRLLLRLDDGRYQLGAATFMLGALYQRSLNLGDILVPLMRE
                     LAEISGESVSFYVRDEAVRVCLHRVDSTHAVRYHVREGDVLPLESGSGGLALLAFGGA
                     EGEVFQRIRDDFYCVSMGERDRETAGISMPVFGVRQTVRGVLTLAGPSSRIDQAFVAR
                     NIGVLFDCAARATDALGGDACALRNAQRHTAGVQSK"
     gene            complement(4281..>4502)
                     /locus_tag="VKJ77_06185"
     CDS             complement(4281..>4502)
                     /locus_tag="VKJ77_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006579627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HMC44894.1"
                     /translation="NKPVPMNIDGATAVIYAELGFAPELARGVFCLSRAVGILSHAWE
                     QRGRNERNKGPMPRQMAYKYTGKPERHLL"
BASE COUNT          896 a         1368 c         1308 g          930 t
ORIGIN      
        1 cgagcacgcc gagcgcggtc gagaccggcg cccggtccgg atttagtttg gtcagctcac
       61 tgtgatggca cttggcgtac aactgccagc cgctatatgc cgacacccag tccccttgct
      121 tgaaaagcgg acttgccgac gccactactt cgccgaccac acccgatcgc tgcacaatac
      181 cgagcggatg cggaacatcg taggtattgc gctcgtgctg ctgaatccgg atgtacggat
      241 ccacgctgac aatgcgcgcc cggatcaaca cctcattcga cgacaaatcg gcgtcgagct
      301 cgctttcgcg taacgcgtaa tgctcatcgc tgacgcgtcc ctcggggcgc ttgacgtaaa
      361 accactggcg attttggtaa ctcataagaa gactcactgc tgtcgtagaa cggtgatcga
      421 tcttaccagt gcttactagt gacttgcatg ctgttgacgt tcgccaattt cgagagcggc
      481 ccgcaagcct ggcatgacgg ccgaggtcgt ctgcggccgg taatactcct tgctgtaagg
      541 gttgggtcga tcgtctgttt catgcctgct ttgctcgcag cgtcagcgaa gcaccttcgc
      601 ctggcgttcg aaagcgcttt ctgtaatccc ctggagacag tccggtcagc cttatgaata
      661 tctttcggaa tgatccaaca tcctcgtacc cgactttcca cgcgacctgg tcgaacgact
      721 gttggctcgt ttcgagcatc tcacgtgctt tgccgacccg aagatgctgg caatactctg
      781 tcgggcgaag accggtcgcc ttctgaaatc tacgaagaaa agtcctttcc tctaaccccg
      841 cgcgctgagc cattaaagcg actgtgggat ggcggtcacc gtcctgctgt aaccagtgct
      901 gcacttcaag aatcgttttg tcgccgtgat tgagctttgg agagaaggca ctgtagtagc
      961 gttgctctcg tcccggggga tcgaccaaaa gaaagcgggc agtctccaac atcgctgcgg
     1021 aaccgagcag gcggtcgact atcctgagcc ccaaatcagc ccatgccatc acgcctcccg
     1081 cggtcagaat gtcaccatcg tcaatcagga gtttgtcgcc atccacgtgg atttcgggaa
     1141 agttctcagc caggagctgt gcttgcgacc agtgcgttgt cgccgagcgt ctcgcaagca
     1201 acccggtctg agcgagaaga aacgtcccga cacaaacaga cgccaacact gcgcctttcg
     1261 catgacagtc gctcaaccat ttcacgatcg gagcgaaagc ctcgcctgtg ggcatcgttc
     1321 cgagcgcggg cggaataatc acgaaatcag gtgcaccatc tgcccatggc ggggcagagt
     1381 tgccagcgtc gaactgaatg tggcttacgc tgaataccgg gtgttcaaca ctttttgact
     1441 gctgagttga ccgctgaaat aaacgctcag caacgtgaaa taggtctgtt agcccatgaa
     1501 cggcagcgag ctggcacccc gggtacatca gcaatgctat ttccacgggc gctattttct
     1561 ttgccattgt cagttttgcc tcgttttttg tcagtcctgc caattcgcca aacaactgcg
     1621 caagcttact cttgagtctt ggagaacgat cgcgtttctc gtaaaaacca ggagatagac
     1681 atgaccaagc gtgcactcat catcgtagac ctgcaaaacg attacttccc aggtgggaaa
     1741 tggacattga ccggcatcga ggccgctgcc gccaacgcgg cgcgcctgct tcaatcagca
     1801 cgtgccgccg ggcaccttgt cgtgcacgtt cgccatgagt ccccgaagag cgacgcggcg
     1861 tttttcgttg cgggttctga aggcgcggcg atcgctccgc aagtgatcaa taaggaagga
     1921 gagcacgtcg tcttgaaaca tcaaatcaat gcctttcgtg acactgatct caagaatatt
     1981 ctggacacta acggcatcga agaagtggtt atcgccggag caatgagcca catgtgcgtc
     2041 gacgccatca cacgggcatc tgtggacttc ggctataagg cgaccgtgat ccatgacgcc
     2101 gttgctacac tcgacatgga atttggcggc gttaaagttc ctgccgccca cgtgcatgcg
     2161 gccttcatgg cagcgcttgg cttcgcctat gcaacgatgc tgtccacgga cgaatacatc
     2221 aacgcttagt tcacgtcgac aatcggtctc gcgttttgtg ccgtgttgct ggaggcactc
     2281 gcttaaccca acgtcactcg ccgcgcagat gtgcgataac cagatccgcc accgcgtcgg
     2341 gtgcttcgcg gggcggaaag tgccccacac cgtccagcac gacgcgtcga tacccaccgg
     2401 tgaaatgccc ttccatccct tgcgatgaag ccggttcgtc gcagaaatcg gtgcccccct
     2461 ggatcatcag cgtgggtgtc gagagctggt cgatagtcgc cagtttctcc cgcagcgcgg
     2521 catacgccgg atcggatact tcgccgccac gccagcgccg ccgataaccg ttgagcgtga
     2581 tgggcaccca gtcggggtta tcgaaggcgg cagcggtgag cgcgaattcc tcgtcgtcga
     2641 accagccggg cggcgaccat gtatcccatt gcaaacgcgc gaaacctttg ggatcggcgg
     2701 cgaccgctgc gggagcggca tcgagtgtca tgaaccattg ataccaaaac ttccgcgcct
     2761 gcgagaagtg gggcaactcg aacgcgcctt tcggctggaa ggccagcgcg agtccggcga
     2821 tacggccaat gcgcccggga aacagcgccg ccagcgtata ggccacgcgt gcgccccagt
     2881 cgtggccgat gacgtcgaaa cgatcaattc tcaggacatc ggccagatcg atcacgtctt
     2941 gtgcgagcgc cacgccggaa ccgtcgcgca cagtttgcgc cgacagaaag cgcgtgttgc
     3001 cggcgccgcg caagtccgga acaatcgttc gaaaacccgc tgctgcgagg cgtgccgcca
     3061 cgggcgacca ggcccgctcg gcatcgggcc agccatggac tagcatgacc ggcggcccgt
     3121 cggccggccc ggactcggtg taggcaatag caagtgttgg cgtgcgtgcc aggagctttc
     3181 gatcgtccat gcgcggtctc caggagattg gccagttacg ttcgatacat aaatgctgcc
     3241 acgtattcca gagcttcgca cgctggcaca tgacgcgcgg cggcgtgttt tgcgtagcgc
     3301 accggttcgt agaaaagcaa ctaacaatct gccgcgtcac gcgcctgagg atctgtcatt
     3361 tgccgtcgcc cgatcgaagc gccttcgaga ttcatcaaag cgggttccgc agaccggggg
     3421 cttcccgtcc cctatatgaa ccgtatgaga cgcgcccggc atcgcgtaaa attccccttc
     3481 gatacaaaca caagacgcgt tgcttacttc gcccacgcca cctagcccat gcaaacgccc
     3541 gagatcaaac ctggcccgaa agagagcgaa ggcgttgccg tcatcgaccg tgcttgcgcg
     3601 atcctgttcg cgttcagacc ggacgatgga tcgctgacac tcgcggaact cgcggcgcgt
     3661 accgggctct acaaaagcac gctgcttcgc ctggcgggcg cgctgatcca gcaccgcttg
     3721 ctactgcgtc tcgacgacgg ccgctatcag ctcggcgcgg ccaccttcat gctcggcgcg
     3781 ttgtatcagc gcagtttgaa tctcggcgat atcctcgttc cgctgatgcg cgaactcgcc
     3841 gagatcagcg gcgaaagcgt gtcgttctat gtgcgtgacg aagcggtgcg cgtgtgtttg
     3901 catcgcgtgg attcgacgca tgccgtgcgt tatcacgtgc gcgaaggcga tgtcctaccg
     3961 ctggaaagtg gttcaggcgg gttggcgttg ctcgcgttcg gtggggctga aggtgaggtg
     4021 ttccagcgca ttcgagacga cttttactgc gtctccatgg gtgaacgtga ccgcgagaca
     4081 gccggtattt cgatgcccgt cttcggggtg cgccagaccg tgcgcggcgt gttgacgctc
     4141 gcgggtccga gctcacgaat cgatcaggcg ttcgttgcgc gcaacatcgg cgtgttgttc
     4201 gattgcgccg cgcgcgcgac tgacgcgctt ggcggcgacg cgtgcgcgtt gcgcaacgcg
     4261 caacggcaca cggctggtgt tcagagcaaa tgacgctcgg gcttgccggt gtatttgtag
     4321 gccatctgcc gcggcatcgg acctttattg cgctcgttgc gccctcgttg ttcccacgca
     4381 tgcgacagga tcccgaccgc acgcgataag cagaacaccc cgcgtgccaa ctccggcgcg
     4441 aagccgagtt ccgcgtagat cacggccgtt gcgccgtcga tgttcatcgg cacgggcttg
     4501 tt
//
LOCUS       DATGBK010000427         1778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_259879, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000427 DATGBK010000000
VERSION     DATGBK010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259879"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            5..79
                     /locus_tag="VKJ77_06190"
     CDS             5..79
                     /locus_tag="VKJ77_06190"
                     /inference="COORDINATES: protein motif:HMM:NF014479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muconolactone Delta-isomerase family protein"
                     /protein_id="HMC44895.1"
                     /translation="MPLFPYMAIQVTPLAQHPSAIAQN"
     gene            100..396
                     /locus_tag="VKJ77_06195"
     CDS             100..396
                     /locus_tag="VKJ77_06195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003807672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HMC44896.1"
                     /translation="MAFIIETWDKPGHAPVLLQERDVHLAYLEANKALLLACGAKLQD
                     DGSNAGGGLYVVDLDTREEVERFIAKDPFALAGLFERVTITRWRKAYVDGKGYL"
     gene            717..1100
                     /locus_tag="VKJ77_06200"
     CDS             717..1100
                     /locus_tag="VKJ77_06200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HMC44897.1"
                     /translation="MQTKTVKIPGPDHPITIEHNPAHITISIGGRIIADTRGALTLRE
                     ASYPAVQYIPRKDVDMSLLQRTDHATYCPYKGDCSYYSIPLGGERSVNAVWTYEDTYP
                     AVAEIKDHLAFYTDRVDKFDVQPAG"
     gene            1306..>1778
                     /locus_tag="VKJ77_06205"
     CDS             1306..>1778
                     /locus_tag="VKJ77_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC44898.1"
                     /translation="MTTQRRLRLGAFMRPATIHTGAWRYPGAFPDANFNFAHLKRFAQ
                     TLERGRFDAFFMADHLAVLNMSTHALRRSHTATSFEPLTLLSALAAVTERIGLIATAS
                     TTFDEPYHVARRFASLDHLSGGRAGWNLVTTANPDAALNFGLEEHVEHGERYKRGR"
BASE COUNT          348 a          555 c          514 g          361 t
ORIGIN      
        1 ctcgctgcct ctctttcctt acatggcgat ccaggtcacg ccgctggctc agcatccgtc
       61 ggctattgcg cagaactgag ttcgataaga ggaggggtcg tggcgttcat tatcgaaacg
      121 tgggacaagc cgggtcacgc cccggtgctc cttcaggagc gcgacgtgca cctggcctat
      181 ctcgaagcga acaaggcact gctgctcgcg tgcggcgcga aactccagga cgacggcagt
      241 aacgcgggcg gcggcttgta tgtggtcgac ctggacacgc gtgaggaagt cgaacgtttc
      301 atcgcgaagg acccgttcgc gcttgccggt ttattcgagc gcgtgacgat tacacgctgg
      361 cgcaaggcgt atgtagacgg caagggttat ttataggccg tactgcgttg ctttcatgcg
      421 gctcgtcgtt gttcgacctg acaagcggct tgacgctcgg caagcaacgc aattctttca
      481 acatcatttc tgtgggcgga ttcttccgcc ggtgctccta gcaccgccgc tccatgttcc
      541 ccttaacgca aacatctctt cctagccgcc gatccgccag ggccgtggca ccggcgcgca
      601 agcacgtggg gtgcacggca agaaaacgcg ctttccgata ccctgcagta ttcgtcggta
      661 acgactatct cactacgctt cagtcagttc acccttgctt caaggagcac gaagccatgc
      721 agaccaaaac agtcaagatt cccgggcccg atcaccccat cacgatcgag cacaacccgg
      781 cgcacatcac gatctcgata ggcgggcgga tcattgcaga cacacgcggg gcactgacgt
      841 tgcgtgaagc gtcttacccg gcggttcaat acattccgcg caaggacgtc gacatgtcgc
      901 tgttgcagcg cacggaccac gcgacctatt gcccctacaa aggggactgc tcgtactaca
      961 gcatcccgct gggtggcgaa cgttccgtga atgcggtatg gacctatgaa gacacctatc
     1021 cagcggtcgc tgagatcaag gaccatctgg cgttctatac ggatcgcgta gacaagttcg
     1081 acgtgcagcc ggcgggctga cacgtgtagg tggcatcgcc ggcgcggttg cctgcatcgg
     1141 cgacgccgca cgcttgccca aagacgaacg attcgccaaa ccgttcctgc atcaatcgcc
     1201 gtttgagcac gctttcgcca ttcgacgtat tttatcgatg acgccgcgag cgaagcgatt
     1261 gcctcgccgt ggaggcattc ttatcaacgc aggaacagaa atcccatgac cacgcaacgt
     1321 cgcttgcggc tcggcgcttt catgcgcccg gccaccattc acaccggagc ctggcgttac
     1381 cccggtgctt tcccggacgc caacttcaat ttcgcgcatc tcaagcgttt tgcgcagacg
     1441 ctggagcgcg gccgtttcga tgccttcttc atggccgacc atctagctgt gctgaacatg
     1501 tctacccatg cgttgaggcg aagtcacact gccacgtcgt tcgagccgct gacattgttg
     1561 tcggcgctcg cggcggtgac cgagcgcatc ggcctgatcg cgacagcgtc cactacgttc
     1621 gacgagccgt atcacgtcgc gcgccgattt gcgtcgctcg accatctgag cggcgggcgc
     1681 gctggctgga acctggtcac caccgctaat ccggacgcgg cgctcaactt cggtctggaa
     1741 gagcatgtgg agcacggaga gcgatataag cggggccg
//
LOCUS       DATGBK010000428         2824 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_120946, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000428 DATGBK010000000
VERSION     DATGBK010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2824
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120946"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1217
                     /locus_tag="VKJ77_06210"
     CDS             <1..1217
                     /locus_tag="VKJ77_06210"
                     /inference="COORDINATES: protein motif:HMM:NF024996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC44899.1"
                     /translation="YRRNRMFKPAFTAASLAVVAVSALPRAAHAQVTLYGAVDSGITY
                     VNNVRTTANAAGNYTGSSVTRMANGVVWGSRFGFKGTEDLGGGNQVIFTLENGFTPSN
                     GVLGNSGRLFGRQAFVGLTNSQYGTVTLGRQYDSANEYVGNLIYGMGSSFVHVGDLDH
                     LDTIARVDNALKYTSPLMGGFRFGGLYSFGGTPGAISSGSTWSIGGSYAQGPLALAAS
                     YVDMRRSTTADPTTWTATADSVFNSSVNEGYASAQSAKFAAVAAQYQIGGLKAGLTYT
                     NTRYIAGNTSLFDGSAVFDNYSTYLKYLVTPATQLFATYGYTARHDVSTAQGEAGTAH
                     YNQWATGVNYSLSKRTGVYAQAVYVRASGNAVNARGQIVAATGVAGDLTLGASAATAG
                     QFATTLGLYHLF"
     gene            1254..2570
                     /locus_tag="VKJ77_06215"
     CDS             1254..2570
                     /locus_tag="VKJ77_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44900.1"
                     /translation="MSTPSIDTLRGTLHTDAQAERELYKKLTWRLIPFFCLCYFSAYL
                     DRVNVGLAKLQMLDALHFSETVYGLGAGLFFVGYILFEVPSNLILQKVGAKLWIARIM
                     VTWGILSGLTMFVKTPGQFYALRFLLGVAEAGFLPGVLLYLTNWFPDARRSKIIALFM
                     MGLPLSSLIGGPLSGWILTFFDGMHGWQGWQWLFGIEALPSIVLGVLVFFYLPNTVES
                     AKFLDSDERMRLKHDLAQESHDGKGHRLRDAFTDPKVWALGLIDLCVLLGTYAISFWL
                     PTIIRDSGVKSALEIGMLTAIPNALAVIMMLVTGASSDKYRERRWHIVVPFACTAFGL
                     IASTFFSGNTAITVILLSIANAGVAAAMPVVWALPSTFLRGTAAAAGIAFACSIANLG
                     GFASTYVLGWMKDSTHSMSAGLITFGICMLAGCLLVLAMPKRIVNR"
     gene            2637..>2824
                     /locus_tag="VKJ77_06220"
     CDS             2637..>2824
                     /locus_tag="VKJ77_06220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011548025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44901.1"
                     /translation="MPTAAALTRGELLARNGCLTIVRQPLAPVKPAPGQPGSGSSYVQ
                     DSPEIFVAILDDGRILAF"
BASE COUNT          509 a          872 c          852 g          591 t
ORIGIN      
        1 cctatcgacg taaccggatg ttcaagcccg ctttcaccgc cgcttcgctc gcggtcgtcg
       61 cggtatctgc cttgccgcgt gcggcgcatg cacaagtcac gctctatggc gcggttgact
      121 cgggcatcac ctacgtcaac aacgtgcgca ctacagctaa cgcggcgggc aactacacag
      181 gctcgtcagt gacgcgcatg gcaaacggcg tggtatgggg atcgcgattc ggcttcaagg
      241 ggaccgagga tctgggcggc ggcaatcaag tcatcttcac ccttgagaac ggcttcacgc
      301 cgtctaacgg tgtgctgggc aatagcggcc ggttattcgg acggcaagcc ttcgtcgggt
      361 tgaccaactc acagtacggc accgtcacgc tgggacgcca gtacgattcg gccaacgagt
      421 atgtcggcaa cctgatctac ggcatgggca gcagcttcgt gcacgtcggt gacctcgatc
      481 acctcgatac catcgcacgc gtggacaacg cattgaagta caccagtccg ctgatgggcg
      541 gcttccgctt cggcggcctg tattcattcg gcggcacgcc cggcgcgatc tcttcgggct
      601 cgacatggag catcggtggt tcatatgcgc aaggaccgct tgcacttgca gcaagttatg
      661 tggacatgcg ccgctcgacc acggccgatc cgacgacctg gaccgccacc gccgacagcg
      721 tgttcaattc atcggtgaat gaaggctatg cgagcgcgca aagcgccaag tttgccgccg
      781 tcgccgcgca atatcagatc ggtggattga aggccggttt gacgtatacg aacacgcgct
      841 atatcgctgg gaatacctcg ctgttcgatg gctccgccgt cttcgacaac tactcgactt
      901 acctcaagta cctcgtcacg ccagcgacgc aacttttcgc gacctacggt tacaccgcgc
      961 gccacgacgt ctccaccgcg caaggcgaag ccggtacggc gcactacaac caatgggcaa
     1021 ccggcgtgaa ctactcgctc tcgaaacgta ccggggtcta cgcgcaggcg gtctacgtgc
     1081 gggctagcgg caacgcggtg aatgcacgcg gtcagattgt tgcggcgacc ggcgttgcgg
     1141 gcgacctgac gctcggcgca tcggctgcga ccgccggcca gttcgcgaca acgctcggcc
     1201 tctaccacct gttctgatct ttcttcacag caccgatttt ccaggagaca cccatgtcga
     1261 ccccttcgat agacactttg cgcggcacgt tgcacaccga cgcacaggca gaacgcgagc
     1321 tgtacaagaa actcacctgg cggctgatcc cgttcttctg cctctgctat ttttcagcgt
     1381 acctggaccg cgtgaacgtc ggtctggcga agctgcagat gctcgacgcg ctccatttca
     1441 gcgagaccgt ctacggcttg ggcgcaggcc tcttttttgt cggctatatc ctgttcgaag
     1501 tgccgagcaa cctgatcctg cagaaggtgg gcgcgaagct ctggatcgcg cgaatcatgg
     1561 tcacgtgggg catcctttcc ggtctcacga tgttcgtcaa gacgccgggc cagttctatg
     1621 cgctgcgctt cctgttgggc gtagcagaag ccggtttcct gccgggcgtg ctgctgtatc
     1681 tgacgaactg gttccccgac gcgcgccgca gcaagatcat tgcgctcttc atgatggggc
     1741 tgccgctgtc gagcctgatc ggtgggccgt tgtcgggctg gatcctgacc ttcttcgacg
     1801 gcatgcacgg ctggcaagga tggcagtggt tgtttgggat cgaagccttg ccgtcgatcg
     1861 tgctcggcgt gctggtgttt ttctacctgc ccaatacggt ggagtcggcg aagttcctcg
     1921 atagcgacga acgtatgcgc ctgaagcacg atctcgcgca ggagtctcac gacggcaagg
     1981 gtcatcggct gcgtgatgcg ttcacggatc cgaaagtatg ggcgctgggt ctcatcgatt
     2041 tgtgcgtatt gctcggcacc tatgcgatca gcttctggct gccgaccatc attcgcgatt
     2101 ccggcgtgaa gagcgcgctc gagatcggca tgctgaccgc cataccgaat gcgctggccg
     2161 tgatcatgat gctggtaacg ggcgcgagtt cggacaagta ccgcgaacgc cgctggcata
     2221 tcgtcgtacc tttcgcctgc accgcgttcg gcctgatcgc gagcacgttc ttcagcggca
     2281 acacggcgat caccgtgatc ctgctgtcga tcgccaatgc aggcgtggcc gccgccatgc
     2341 cggtggtctg ggcattgccc tccacgttcc tgcgaggcac ggcggcggct gcgggcatcg
     2401 cgttcgcttg ctcgatagca aacctgggcg gctttgccag cacctacgtg ctgggctgga
     2461 tgaaggactc gacccacagc atgagcgccg gcctgatcac cttcggcatc tgcatgctgg
     2521 cgggttgcct cttggtattg gcgatgccga agcgtattgt taatcgttga cgccgggcgt
     2581 tgagacaaag cgttgaagcg gtttagtcga ataaagcggc attttcagga attgtcatgc
     2641 ctactgcagc agcgctcacc cgaggtgaac tgctcgcgcg caacggctgc ctgaccatcg
     2701 tcaggcagcc gctcgcgccg gtcaaacccg cgcctggaca accgggcagc ggctcttcct
     2761 acgttcagga ctcgccggaa attttcgtcg cgatactcga cgatggccgc atcctggcgt
     2821 tcaa
//
LOCUS       DATGBK010000429         1697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_190547, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000429 DATGBK010000000
VERSION     DATGBK010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190547"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..911)
                     /locus_tag="VKJ77_06225"
     CDS             complement(<1..911)
                     /locus_tag="VKJ77_06225"
                     /inference="COORDINATES: protein motif:HMM:NF014653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HMC44902.1"
                     /translation="MADIVTTEYRLSQENDLKRFVATVLTRVGIDPADAQIAADVLVS
                     ADMRGVESHGVARLETFYVNRLRGGQMEKSPKVTTVRETETSIVIDAGNGLGHPAAKR
                     AMDTIIEKAQKNGAAFGAVRNSNHYGIAGFYAMMALEHDMIGMASTNTVRIAAPTYGR
                     DLMLGTNPLAFAVPAQDEPAFVLDFATTTVPRGKLEVYNRKNKQLNPGWAIDEHGEPT
                     LDPQVALRGALLPLGGFGVDNGGHKGYGLGLLVDIFCGVLSGGKFGTGAPVPSDGAVP
                     GAISHWFAAFRVDGFRDVADFKRDMDK"
     gene            1010..>1697
                     /locus_tag="VKJ77_06230"
     CDS             1010..>1697
                     /locus_tag="VKJ77_06230"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HMC44903.1"
                     /translation="MDELRTALARIVGDDGLLTAPEDVIAYGFDGTFYDNTPPLVVLP
                     TSVEQVAAIHRLATERHIPITPRAMGSGLSGGSVPLGGSIVLGISKMNAIIAIDEIDR
                     VAIVQPGVITGYLQSQVEARGLFYPPDPSSLRQSALGGNVSENAGGSRALKYGVTGDY
                     VLALQVVLPDGTVIRVGGKAVKNVTGYNLRALFTGAEGTLGTITEITLKLLSKPKFSR
                     TALAVYDRIED"
BASE COUNT          330 a          540 c          506 g          321 t
ORIGIN      
        1 tctttatcca tgtcgcgctt gaagtcggcc acgtcgcgaa aaccgtcgac gcgaaacgca
       61 gcaaaccaat gtgagatcgc accgggcacg gctccgtcac tcggaaccgg agccccggta
      121 ccgaattttc cgcccgataa gacaccgcag aagatgtcga caagtaaacc gaggccgtag
      181 cctttgtggc cgccgttatc caccccgaaa ccgcccagcg gtaagagcgc acccctgagc
      241 gcgacttgcg gatcgagcgt cggttcaccg tgctcgtcga tcgcccagcc cggattaagc
      301 tgtttgttct tgcggttgta gacttcgagt ttaccgcgcg gcaccgtcgt ggttgcaaaa
      361 tcgagaacga acgcaggttc gtcttgcgcg gggacggcga acgcaagcgg attggtaccc
      421 agcatgaggt cgcggccgta cgtcggcgcg gctatgcgca cggtattcgt cgatgccatc
      481 ccgatcatat cgtgctctaa cgccatcatc gcatagaagc ccgcgatccc gtaatgattg
      541 gaattgcgca cggcaccgaa ggcagcgccg ttcttctgcg ccttctcgat aatcgtgtcc
      601 atcgcgcgct tcgcggccgg atgtccgagg ccgttgccgg cgtcgataac gatcgacgtc
      661 tcggtttcgc gcacggttgt caccttcggc gacttctcca tctggccgcc gcgcaaacgg
      721 ttcacgtaaa acgtttccaa gcgcgcaacg ccgtgcgatt cgacaccacg catatcggcg
      781 ctcacgagca cgtcagcggc gatctgcgcg tcggccggat cgatgccgac acgggtcagc
      841 accgtggcga caaaacgctt gagatcgttc tcttgtgaaa gccggtattc ggtggtaacg
      901 atgtccgcca cgggaacctc caacgtcgat agcctcgccg cagaacattt cggtccgcgc
      961 cgcccggtcc ccgcagggcg cggtcatccg gcatccgtac gagacgcacg tggacgaatt
     1021 gcgaaccgcg ctcgcgcgca tcgtcggaga cgacggcctg ttgaccgcgc ccgaggacgt
     1081 gatcgcgtac ggcttcgacg gaacgttcta cgacaacacg ccgccgctgg tcgtgcttcc
     1141 gacgtcggtc gagcaggtcg ccgcaattca ccggctagcg accgagcgcc atattccgat
     1201 aacgccgcgt gccatgggca gcgggctttc gggcggctcg gttccgctgg gcggcagtat
     1261 cgtactcggc atctcgaaga tgaatgccat catcgcgatc gatgaaatcg accgcgtcgc
     1321 catcgttcaa ccgggcgtga taaccgggta tttgcaatcg caagtcgagg cgcgcggact
     1381 tttctatccg cccgatccat cgagtttgcg tcagagtgca ctcggcggaa acgtttcgga
     1441 aaacgccggc ggctcgcgcg cgctcaagta cggcgttacc ggcgactacg tactcgcact
     1501 gcaggtcgtg ctaccggatg gaaccgtcat tcgggtcggc ggcaaagccg ttaagaacgt
     1561 gaccggctat aacttgcgcg cgctattcac cggcgcggaa ggcacgctcg gaacaatcac
     1621 cgagattacg ctcaagcttt tgtccaaacc gaagttctcg cggacggcgc tcgccgtgta
     1681 tgaccgtatc gaagacg
//
LOCUS       DATGBK010000430         1820 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213477, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000430 DATGBK010000000
VERSION     DATGBK010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213477"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1820
                     /locus_tag="VKJ77_06235"
     CDS             <1..>1820
                     /locus_tag="VKJ77_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018007395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HMC44904.1"
                     /translation="ATLRARTGHDFRFYKRATMLRRIERRLQVNGVPDLIAYRDLLRD
                     NPRETAALLKDMLIGVTSFFRDREAFESLERGVLPTLFQNKADGDQVRAWVAGCSSGE
                     EAYSLAMLLSEQRDALRSAANIQVFATDIDESAVARARAGLYPESIMTDVRPSTLRQF
                     FVRTESRYEVVKSVREKILFAMHNVLRDPPFSRLDLVSCRNLLIYLDRGVQNQVLEMF
                     HYALYPNGYLFLGSSESADSVEDLFSVVDKKNRIYRAKAAKLPNRPSLASPSLTMQAR
                     YAYDEEAGSALLPGRRNFSFSALHQRVLEQYAPPSVIVNRDSKIVHMSDNAGRFLRYV
                     GGEPSSNMIAVVLPELRLDLRTALFQAAQTGNSVEARRVKLQRDGHASYVNMTVRPFH
                     DAAADADFLLVLFDEVQEAMTESKMVVEHQTGNDTVMQQLEQELHSSKEQLQTTIEQY
                     ETSTEELKASNEELQAINEELRSATEELETSKEELQSVNEELITVNAELQERIEETGK
                     ANDDLQNLITSTDIATIFVDRAMCIKRYTPSAVTVFNLIGADVGRSLFDITHRLVYPE
                     LADDVSATFQSLRLTEREVATSDGRWFFARVLPYRTADDR"
BASE COUNT          367 a          548 c          571 g          334 t
ORIGIN      
        1 tggcgacgtt gcgcgcccgc accggccacg acttccgttt ctacaagcgg gcgaccatgc
       61 tgcgccggat cgagcggcgc ctgcaagtca acggcgtgcc ggacctcatt gcctaccgcg
      121 acctgctgcg ggataacccg cgcgaaactg cagccttgct caaggacatg ctgattggcg
      181 tgaccagttt tttccgcgat agagaagcgt tcgagtcgct cgagcgcggc gtgttgccga
      241 ccttgttcca aaacaaggcc gacggcgacc aggttcgcgc gtgggtcgcg ggatgctcgt
      301 cgggcgagga agcgtattcg ctcgccatgc tgctatccga gcagcgcgat gcgttgcgtt
      361 ctgccgccaa catccaggtg ttcgccaccg atattgacga aagcgcggtt gcgcgcgcac
      421 gggccggact gtatcccgag tcgatcatga ctgacgtgcg cccctccacg ctgcggcaat
      481 ttttcgtcag gaccgaatca cgctacgagg tggtgaaaag cgtgcgcgag aagatcctgt
      541 tcgccatgca caacgtgctg cgcgatccgc cgttctcgcg gctcgacctg gtttcctgcc
      601 gcaatctcct gatctatctc gaccgcggcg tacagaacca ggtgctggag atgtttcatt
      661 acgcgttgta cccgaacggg tacctgttcc tcggcagctc ggagtcggcg gactcggttg
      721 aagacctgtt cagcgtggtc gacaagaaga accggatcta ccgggcgaaa gcggcgaagc
      781 tgccgaaccg gccgtcgctg gcgtctcctt cgctgacgat gcaagcacgt tatgcgtacg
      841 acgaagaggc ggggtccgcg ctgctcccgg ggcgccgcaa tttctcgttc agtgcgctgc
      901 accagcgcgt gctcgagcaa tacgcgccgc ccagcgtgat cgtgaaccgc gattcgaaga
      961 tcgtacatat gtcggacaac gcgggacgtt tcctgcggta tgtcggcggc gagccttcga
     1021 gcaacatgat tgccgtggtg ctgcccgaac tgcggctcga cctgcgtacc gcgctgttcc
     1081 aggccgcgca gacaggcaat agcgtggagg cccggcgcgt caaactgcag cgcgacggtc
     1141 acgcttcata cgtcaacatg accgtccgcc cgttccacga cgccgccgcc gacgccgact
     1201 tcctcctcgt cctgttcgac gaggtccagg aagcgatgac ggaaagcaag atggtcgtgg
     1261 agcatcaaac gggtaatgac accgtgatgc agcaactcga acaagagctg cattcgagca
     1321 aggaacaatt gcagaccacg atcgagcagt acgagacgtc gacggaagag ttgaaggcgt
     1381 cgaatgaaga attgcaggcg atcaacgaag agttgagatc ggcgacggag gaactcgaaa
     1441 ccagcaagga agagttgcag tcggtgaacg aggaacttat cacggtcaat gcggaactgc
     1501 aggagaggat agaggaaacc ggcaaggcca atgacgacct gcagaacctg attacctcta
     1561 cggacattgc cactatcttc gtcgatcgcg cgatgtgcat caaacgctat acgccgagcg
     1621 cggtcacggt gttcaacctg atcggcgcgg atgtcgggcg ttcgttgttc gacatcacgc
     1681 accggctcgt ctatcccgag ctggccgacg acgtgagcgc gacgttccag tcgctgcgcc
     1741 tgaccgagcg tgaggtcgcc acctcggacg gccgctggtt cttcgcgcgt gtgttgccct
     1801 accggacggc ggacgatcgg
//
LOCUS       DATGBK010000431         2201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_167238, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000431 DATGBK010000000
VERSION     DATGBK010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167238"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..71)
                     /locus_tag="VKJ77_06240"
     CDS             complement(<1..71)
                     /locus_tag="VKJ77_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HMC44905.1"
                     /translation="MSILYTATATSTGGRDGRAVSSD"
     gene            complement(231..683)
                     /locus_tag="VKJ77_06245"
     CDS             complement(231..683)
                     /locus_tag="VKJ77_06245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC44906.1"
                     /translation="MTSTPQFSLELDAQLCFALYSTSLAMTKTYKPLLDKVGLTYPQY
                     LTMLVLWQSDDLTVKQMAERLSLDSATMTPLLKRLEAQGYVKRVRGIEDERQVHIHLT
                     DAGRELKHAIRDIPDEIYCAAGSDADRLIKLRDDLVRLRTSLMEHNES"
     gene            complement(866..1684)
                     /locus_tag="VKJ77_06250"
     CDS             complement(866..1684)
                     /locus_tag="VKJ77_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010110129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BPSS1780 family membrane protein"
                     /protein_id="HMC44907.1"
                     /translation="MQLIEVPAKTGYVWFRQGIWLFRRNPLAFLTVFFAYLFAMTLIS
                     RLPLIGPVLPLLLIPGVAVGFMAACRNTIAKKPVWPTVLIDGFRAYGQIVARRLLVLG
                     VVYVVAMGLIFAASALVDDGLLLNMMLGNGPAGDPETVAASFNPLAVLVAMVCYLPVA
                     MLFWFAPILVAWHDVPPVKALFFSFVSCWRNRGAFVIYGVLWIGIALAVSFGLSALMQ
                     VLGVAQEMALAVLMPASILVTTALYCSFYATYRGCFGVQSEDSPDIPDPSAPPV"
     gene            complement(1688..2201)
                     /locus_tag="VKJ77_06255"
                     /pseudo
     CDS             complement(1688..2201)
                     /locus_tag="VKJ77_06255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355315.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
BASE COUNT          521 a          631 c          647 g          402 t
ORIGIN      
        1 tcatccgacg atactgcccg gccgtcgcgg ccacccgtgc tcgttgcggt tgctgtgtaa
       61 aggatgctca tggtgttctc ctgttcaatg gttgccgctc ggcggcagaa atagattact
      121 gcaggtctga agtccggtaa cgcggtgaca gcgggaataa atatatcgca ctaatcatta
      181 gtgtacaaat tgaattgacg tgaactcgat tgattatgac tatcgatttt ttaggattcg
      241 ttgtgttcca tcagcgacgt gcgcagtcgt acgagatcgt cgcgcagctt gatgagccgg
      301 tcggcgtccg atccggctgc gcagtagatc tcgtcgggga tatcgcggat agcgtgcttt
      361 agttcacggc cggcgtcggt aaggtggata tgcacttgcc gttcgtcttc aataccgcgt
      421 acgcgcttga cgtacccttg cgcctcaaga cgcttgagca gaggtgtcat ggtcgccgaa
      481 tcgagactta gccgttcggc catctgcttg actgtcaggt cgtcgctttg ccacagcacc
      541 agcatggtca ggtactgcgg ataggtcagt ccgactttat ccagcagcgg tttatacgtc
      601 ttggtcatcg cgagcgaggt cgaatacagc gcgaagcaaa gctgggcgtc gagttcgagc
      661 gagaattgcg gggtagaggt catgacggtc gcgcctgagt acgctaaaaa cgaatatagc
      721 gatagtgtac gcaaatattt agcgcactaa ggaagccacc cgtctccatt tcacgacagg
      781 ccacaaaaca aaacgccgat gactaaaaca gtcatcggcg cagtcatcga cggtcgatca
      841 tctggattcg ttcatccggg aagactcaca ccggtggtgc ggacggatcc gggatatcag
      901 gtgaatcttc cgattgcaca ccgaaacagc cacgatacgt cgcgtaaaac gagcaataca
      961 acgcggttgt cacgaggatg gacgccggca tcaacaccgc gagggccatt tcctgcgcaa
     1021 cgccgagcac ctgcatcaac gcgctgagtc cgaaggacac ggcgagcgca ataccaatcc
     1081 acaacacacc gtagatgacg aacgcgccgc gattgcgcca gcaactgaca aagctgaaaa
     1141 acagcgcttt caccggcggc acgtcgtgcc aggcaaccaa aattggcgcg aaccagaaca
     1201 acatggcgac cggcaggtag cagaccatcg cgaccagcac cgcaagcggg ttgaagcttg
     1261 ccgccacggt ttccggatcg ccggccggac cgttgcccag catcatgttg agcagcaggc
     1321 cgtcatcgac cagcgcggac gcggcgaaga tcagacccat cgcgacgaca taaaccacgc
     1381 cgagcacgag caggcggcgc gcgacgatct gcccataggc acgaaagccg tcgatgagca
     1441 ccgtcggcca gaccggtttc ttggcgatgg tattgcggca agccgccatg aaccccacgg
     1501 ccacgcccgg aatcagcagc aggggcagca cgggaccgat cagcggcagc cgcgagatca
     1561 gcgtcatggc aaacagatag gcgaagaaca ccgtgagaaa cgcgagcgga ttccggcgaa
     1621 acagccagat accctggcgg aaccacacat aaccggtttt agcggggact tcgatcaatt
     1681 gcattgatta attaccgtga acgggaggag gcgcaacttt gatgcgctcg cgcaaaatgc
     1741 gttcgaaatg gccgggatcg tgcggtttca gcatctcggc ttcgcgtggc cggtaaaaat
     1801 catagagacg cgatacccag aagcgcaacg cgcccgcgcg cagcatgtcg ttccagtgat
     1861 gcgcttcggc cggcgtgaac ggccgcacgg tctgataggc gcgcagcaac gcgtcgaccc
     1921 gcgcgagatc cagcgcgccg gttgccaaat cgacgcacca gtcgttcacg cacacggcga
     1981 catcgaagag ccatttgtcg ttgccggcga aatagaaatc gaagaacccg ccgagccgcg
     2041 tttcatccgc gctcggatgc gcgaacagca cattgtcgcg gaacaggtcg caatggcatg
     2101 ggccttcggg cagcaaccca tattcttccg atgcaaaacg ctgcctgatg cgcgagttcg
     2161 ctggtaatta gcgcgcgctg tgcgtcgctc agatgcgaca g
//
LOCUS       DATGBK010000432         2034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_282889, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000432 DATGBK010000000
VERSION     DATGBK010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282889"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..681
                     /locus_tag="VKJ77_06260"
     CDS             <1..681
                     /locus_tag="VKJ77_06260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44908.1"
                     /translation="RQAISKMIDRRAITQYLLNGAGVPAGQIVPQGIGGYSTALPADT
                     YDLAGAKTLLAQAGYPKGFTLTIHSSNDRFSSDGDVAQAVGQMLARGGIRIANVVTQP
                     YNVYAGAAAKQSYSAFIFSFGNTTSDSTIALSNVMATYSRSAGTGAFNRARYSNPALD
                     QALTAASASFDPVQRERLLEQAAEAGFRDLGIVPLYFPENFWATRNGVTFHPNKAEYT
                     TAIYVGIQ"
     gene            684..>2034
                     /locus_tag="VKJ77_06265"
     CDS             684..>2034
                     /locus_tag="VKJ77_06265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019701459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HMC44909.1"
                     /translation="MIDMVHNNTFDAASGQDATCIEFMIPMRDGVRLATDVHLPAGFR
                     PGIDAPLPTILERTPYGKREVSRSEINRGEPAARRGDIAAYFVARGFAVVFQDCRGRH
                     GSEGEFTKYLSEGPDGYDTLEWITQQDWSTGRVGTMGLSYAAHTQMAAACMNPPGLAC
                     MVMDSGGFSNSYQCGIRQGGAFELKQATWAVNQAKGSQAVLNDPLLKAALDAQDLREW
                     FSRMPWRPGQSPLRFLPEYERYLFDQWTHETFDEFWQQPGIYAEGFYDTMARVPTVLM
                     SSWYDAYVRSTMDNFAAMSKLDPVAAPTYLIMGSWLHGDRNVPFSGDVDFGPAARIEG
                     QIAEDWLAFRAQWFDRWLKPATLGIKHSDPVARIFLMGGGSGARNADGRMEHGGAWIQ
                     SSQWPLADTRFTRFYLREGGVLSEKPPETADASVSYAFDPSNPVPTIGGALTSGAPVF
                     "
BASE COUNT          407 a          603 c          614 g          410 t
ORIGIN      
        1 cggcaggcta tatcgaagat gatcgatcgg cgcgccatca cgcaatatct gctgaatggc
       61 gcgggcgttc cggcgggcca gatcgtgccg cagggaatag gcggttactc aacggcattg
      121 ccagccgata cctatgatct cgcgggagcg aaaacactac ttgcgcaagc gggctatccg
      181 aaaggattca cgctgacgat ccattcctcc aacgaccgct tttcctccga tggcgacgtc
      241 gcccaagccg tcggacaaat gctggcgcgc ggcggcatcc gcatcgccaa cgtggtcacg
      301 caaccctaca acgtctatgc cggcgccgcg gccaagcaaa gctacagcgc ctttatcttc
      361 agcttcggca acacgacgag tgactccacc atcgcgctct ccaacgtcat ggcgacctat
      421 tcgcgaagcg caggaacagg ggcattcaat cgcgcccgct actcaaaccc ggcgctcgat
      481 caagcgctca ccgcggctag cgccagcttt gaccccgtgc agcgcgagcg cttgcttgag
      541 caagcggcag aagcgggatt ccgcgatctt ggcattgtcc cgctgtattt ccccgagaac
      601 ttttgggcaa cgcgcaacgg cgtcacgttc cacccgaaca aggccgaata caccacggca
      661 atttatgtag gaatccaata aaaatgatcg atatggttca caacaataca ttcgacgctg
      721 catccggaca ggacgcaacg tgcatcgagt tcatgatccc catgcgcgat ggcgtgcgcc
      781 tcgccacgga cgttcacctg ccggcaggtt ttcgtccggg tattgacgcg cccttgccga
      841 cgattctcga gcgcacgcct tatggcaaac gcgaagtatc gcgttcggag atcaaccggg
      901 gcgagccggc cgcgcgtcgt ggcgatattg ccgcgtattt cgttgcgcgc ggcttcgcgg
      961 tcgtgttcca ggattgtcgc ggacgtcatg gatcggaggg cgagttcacc aagtatctgt
     1021 cggagggacc ggacggttat gacacgctcg aatggatcac gcagcaggac tggtcgactg
     1081 gccgcgttgg caccatgggt ctctcttatg cggcgcacac gcaaatggcc gctgcctgca
     1141 tgaaccctcc cggcctcgca tgcatggtga tggactcggg cggtttctcc aacagctatc
     1201 aatgcggcat tcgacaaggc ggcgccttcg aactcaagca ggcaacctgg gcggtcaatc
     1261 aggcaaaggg gagccaggcg gtattgaacg atccgttgct caaggcagca ctcgacgcgc
     1321 aggatttgag ggaatggttt tcacgcatgc cgtggcggcc gggtcagtcg ccgttgcgtt
     1381 tcttacctga atacgagcgc tatctgttcg atcaatggac gcacgaaacc ttcgatgaat
     1441 tctggcaaca gcctggcatc tatgcagaag ggttctatga caccatggcg cgcgttccga
     1501 cggtcctgat gtcgagctgg tacgacgcgt atgtacgctc gaccatggac aacttcgccg
     1561 ctatgtcgaa gctcgatccg gtcgctgcgc cgacctacct gatcatgggg tcgtggctgc
     1621 atggcgaccg caacgtgccg ttcagcggcg atgtcgattt cgggcccgcc gccaggatcg
     1681 aagggcagat tgcggaggac tggcttgcgt ttcgcgcgca atggttcgac cggtggctaa
     1741 agcccgccac gttgggaata aaacattccg atcctgttgc aaggatcttc ctgatggggg
     1801 gaggaagtgg cgctcgcaat gccgatggtc gcatggagca tggcggtgcg tggatccagt
     1861 catcgcaatg gccgctggcc gatacgcgct ttacgcgttt ctatttgcgg gaaggcggcg
     1921 tgttgtcgga gaagccgcct gaaacggcag acgcatctgt ttcgtacgcg ttcgatccgt
     1981 cgaatcccgt ccctactatc ggtggagcat tgacatcggg cgcgccggtt tttg
//
LOCUS       DATGBK010000433         1610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_190616, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000433 DATGBK010000000
VERSION     DATGBK010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190616"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /locus_tag="VKJ77_06270"
     CDS             <1..302
                     /locus_tag="VKJ77_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HMC44910.1"
                     /translation="AIEDMQDRSGHWRAKPDAGMLRRAMRRAHVPLSEAVLVEDTRGH
                     LKRYKRLGIRTVWITGHLPSVLNASGAKSLRSPTSGRPHYVDLKIRSLKGLRGLS"
     gene            606..>1610
                     /locus_tag="VKJ77_06275"
     CDS             606..>1610
                     /locus_tag="VKJ77_06275"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006761998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HMC44911.1"
                     /translation="MESIGIVTPQTLHFTEPLRMQNGSLLGDYDLVVETYGTLNAEHS
                     NAVLVCHALNASHHVAGVYADDPKNVGWWDNMVGPGKPLDTNRFFVIGINNLGSCFGS
                     TGPMSVNAVTGKPYGASFPVVTVEDWVHAQARVADLYGIERFAAVMGGSLGGMQALAW
                     SMMYPDRVAHCIVVASTPKLSAQNIAFNEVARSAILSDPDFHGGDYYAHGIKPRRGLR
                     VARMIGHITYLSDDDMAAKFGRALRRAEGALDAYNFNFDVEFEVESYLRYQGDKFAEY
                     FDANTYLLITRALDYFDPAKAFDGDLTKSLAHTTAKYLIASFSTDWRFAPARSRELVK
                     A"
BASE COUNT          308 a          491 c          457 g          354 t
ORIGIN      
        1 ttgccatcga ggatatgcag gatcgaagcg gtcattggcg tgcgaagccc gatgcaggaa
       61 tgcttcggcg cgcgatgcgg cgggctcacg tgccactttc cgaggcggtt cttgtagaag
      121 atacgcgtgg acatttgaaa cgctataaac gcttggggat tcgcacggtc tggatcacgg
      181 ggcatctgcc gtcggtttta aatgccagcg gagcaaagtc gcttcggtca ccgaccagcg
      241 gccggcccca ttacgtcgat ctcaagatcc ggtctttgaa aggcttgcgc ggtctcagct
      301 agaccaggcg tatcccgagt cgccttaaag cgcaaaagta gtacggactt caaacgtcat
      361 cgcttgggcc tcgctgctcc gggcatgccg gtgagccgcc tcagctccct ttcccgtttt
      421 tccgatatac ttcatcgcta tcttgatttg tttcaacgcg ccgatttgct gactcgattg
      481 cgggcgcgcg aaccctgacc cggttcacta taaatgcggc taaagaggtt gtcagccgcg
      541 ccgcttagtt attcccgcgc atcgccgacg ccgtttagcc gccctgtttt ctttaggcgg
      601 aatgaatgga atcaatcggc atcgtcactc cccaaacact gcatttcact gaaccgctgc
      661 gcatgcaaaa tggcagcttg ctcggtgact atgatctcgt cgtcgaaacc tacggcacgc
      721 tcaacgccga gcactcgaac gccgtgctcg tctgccatgc gctgaacgcc tcgcatcatg
      781 tggcgggcgt ctatgccgac gatcccaaga acgtcggctg gtgggacaac atggtgggtc
      841 cgggcaagcc gctcgatacc aaccgttttt ttgtcatcgg catcaataac ctgggctcgt
      901 gtttcggttc gaccggaccc atgagcgtga acgctgtcac cggcaaaccg tacggcgcca
      961 gcttccccgt tgtcaccgtc gaagactggg tccacgcgca agctcgcgta gcggatctat
     1021 atggtatcga gcgcttcgcc gcggtcatgg gcggcagcct cggcggcatg caggctttgg
     1081 cctggagcat gatgtatccg gatcgcgtgg cgcactgcat tgtggtggct tcgacgccga
     1141 aactctccgc gcagaacatt gcgttcaacg aagtcgcgcg ctccgccatc ctctccgatc
     1201 ccgatttcca cggcggcgac tattatgcgc acggtatcaa gccgcgccgc ggattgcggg
     1261 tcgcgcgcat gatcggccac atcacgtatc tgtcggacga cgacatggcc gccaagttcg
     1321 gccgcgcgtt gcgtcgtgcc gaaggcgctt tggatgcgta caacttcaac ttcgacgtcg
     1381 agttcgaagt ggagtcgtac ttgagatacc aaggcgataa attcgccgaa tacttcgatg
     1441 ccaacacgta tctgctcatc acccgcgcgc tggattattt cgatcccgcc aaggcgttcg
     1501 acggcgacct gaccaagtcg ctcgctcaca ccactgcgaa gtatctgatc gcgagcttct
     1561 cgaccgattg gcgtttcgcg cccgcacgct cgcgcgaact ggtgaaagcg
//
LOCUS       DATGBK010000434         2666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_167277, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000434 DATGBK010000000
VERSION     DATGBK010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2666
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167277"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VKJ77_06280"
     CDS             <1..286
                     /locus_tag="VKJ77_06280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012734562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HMC44912.1"
                     /translation="GGKLEAGESVEAALTRELHEELGIEVTACERWRTLEHDYPHAYV
                     RLYFCKVTAWSGEPVGREGQALAWQHLPADVTPLLPAAIPVLEWLAAEAV"
     gene            complement(319..510)
                     /gene="yacG"
                     /locus_tag="VKJ77_06285"
     CDS             complement(319..510)
                     /gene="yacG"
                     /locus_tag="VKJ77_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HMC44913.1"
                     /translation="MTTIVKCPTCEKDVRWVPESRFRPFCSDRCKQIDLGAWATEKYK
                     IGGSQQDAPPDEDSHSGLN"
     gene            complement(567..1322)
                     /gene="zapD"
                     /locus_tag="VKJ77_06290"
     CDS             complement(567..1322)
                     /gene="zapD"
                     /locus_tag="VKJ77_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006756831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HMC44914.1"
                     /translation="MILYEYPFNERIRTLLRLEDLFERFTFFLTQEDPREHHAALTTL
                     FEIAEVAGRTDLKADLMKELERQRQTLAPFRGNPGIEQDALESVLGEIEQTLAGLGQM
                     QGKTGQHLADNEWLASIRSRTIIPGGTCRFDLPSYFAWQQNPAEERRGDIAKWVTPML
                     PLRDAATIVLRLARESGQASKVMAMQGSYQQMLSGRTYQLMQVRVPSDTRLIPEASAN
                     KYMLWVRFTVQDGDLRPRAVDADIPFHLTLCSL"
     gene            complement(1479..2114)
                     /gene="coaE"
                     /locus_tag="VKJ77_06295"
     CDS             complement(1479..2114)
                     /gene="coaE"
                     /locus_tag="VKJ77_06295"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006487123.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HMC44915.1"
                     /translation="MFSIGLTGGIGSGKTTVADMFAARGVPVIDTDLIAHQITAPGGV
                     AMPLIESMFGPEYVAADGSLDRAKMRTRVFSDNAAKAQLESITHPLIRAESERQRNAA
                     QGAYHIVVVPLLIEAGERASKVDRILVVDCPVDTQIERVIRRNGFTRDQVLAIIARQA
                     TREARLAAADDVVVNDSSATLETLQREVDGLHARYVAMAAESSKRGSKART"
     gene            complement(2140..>2666)
                     /locus_tag="VKJ77_06300"
     CDS             complement(2140..>2666)
                     /locus_tag="VKJ77_06300"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HMC44916.1"
                     /translation="LATALFAALSLFAFGPTLIALTAFGLCATLLAASLIDFDTRYLP
                     DMLTLPLLWAGLIVNLGDTAFVPLHEAVIGAIAGYLFLWCVYWLFRLVRGVEGMGYGD
                     FKLLGALGAWLGWQALPQVVLVSAIAGAIFGLAATGIGKMRFEEPLPFGPFLAAGGVI
                     TLFFGTPLYAMFGG"
BASE COUNT          528 a          806 c          794 g          538 t
ORIGIN      
        1 cggcggcaag ctggaagcgg gggaaagcgt tgaagcggcg ctcacgcggg aattgcatga
       61 ggaattgggt atcgaggtga ctgcctgcga gcgctggcgg acactggaac acgattaccc
      121 ccatgcttac gtgcggctct atttctgcaa ggtgaccgcg tggagcggcg agccggtcgg
      181 ccgcgaaggc caggcgctgg cctggcagca tcttcccgcc gatgtcacgc cgttgttgcc
      241 ggcggccatt cctgtactgg agtggctcgc ggctgaagcg gtttagccag ggcgctttat
      301 ttctcggcgg ctagttcatt agttcaggcc gctatgtgag tcttcatcgg gcggcgcgtc
      361 ttgctgactg ccgccgatct tgtacttctc ggtcgcccag gcaccgaggt cgatctgctt
      421 gcaacggtct gaacaaaacg gacgaaagcg gctttcggga acccagcgga cgtccttctc
      481 gcaagtcggg catttaacga tagtggtcat tcggcagagc ggatttaaag aggttgagtt
      541 cagtaaatgg ggtttttaag cccaacttaa agactgcata acgtcagatg aaacggaatg
      601 tcggcgtcta ctgcacgtgg cctcagatcg ccgtcctgca ccgtaaagcg cacccatagc
      661 atgtacttgt tcgcactcgc ctcggggatc aggcgcgtgt cggacggcac ccgcacctgc
      721 atcaattgat aagttcgacc cgaaagcatc tgctgatagc tgccttgcat ggccatgact
      781 ttggacgcct gacccgattc acgtgcgaga cgcagcacga tagtggccgc gtcgcgcaac
      841 ggcagcatgg gcgtgaccca tttcgcgatg tccccacgac gctcctcggc tggattttgt
      901 tgccacgcga agtacgacgg cagatcgaag cggcaggttc cacccgggat gatcgtacgg
      961 ctgcgaatgc tcgcgagcca ttcgttatcg gccagatgct ggcctgtctt gccctgcatc
     1021 tgtccgaggc cagccaatgt ctgctcgatt tcaccaagca ctgattccag ggcatcctgc
     1081 tcaataccgg gattgccgcg gaatggcgcg agcgtctggc gttgccgctc cagctccttc
     1141 atcaggtccg ctttcagatc cgtgcggcca gcgacttcgg cgatctcgaa caacgtggtc
     1201 agtgcagcgt gatgttcgcg cgggtcttct tgagtcagaa agaaggtgaa acgctcgaaa
     1261 aggtcttcga gacgcagcag cgttctgatt cgctcgttga aggggtactc gtaaaggatc
     1321 aagcgcgctc gcctcggcgt tggtcgaaag gttcgatggc agaaagtgag gacattctaa
     1381 tgccgcatca aactcacggc aaatccgcac gtttaatcac atttgacgcg gattttcagc
     1441 gccgttcgtg acgagttcga acgcgttgca tgcacttgct aggtacgcgc tttgctcccc
     1501 cgtttgctcg actccgcggc cattgccacg tatcgcgcgt gcaacccgtc cacctcgcgc
     1561 tgcagcgttt ccagcgtggc tgacgagtcg ttgacgacga cgtcgtcggc ggccgccagg
     1621 cgcgcttcac gtgtggcctg acgcgcgatg atggcgagca cctgatcgcg tgtgaagcca
     1681 ttgcgcctga tcacacgctc gatttgcgtg tccaccgggc agtcgaccac gagaatccga
     1741 tccaccttgc tcgcgcgttc gcccgcttca atcagcaacg gcaccacgac gatgtgataa
     1801 gccccttgtg ctgcattgcg ttgacgctcg ctttcggcgc ggataagcgg atgcgtgatc
     1861 gattcgagtt gcgctttggc ggcgttatcg gagaaaacgc gggtgcgcat ttttgcgcga
     1921 tccagcgaac cgtcagcggc gacgtattcc gggccgaaca tgctttcgat cagcggcatc
     1981 gcgacgccgc ccggcgcggt aatctggtgc gcaatcaggt cggtatcgat aacgggtacg
     2041 ccgcgcgcgg cgaacatgtc cgccaccgtg gtcttgccgc tgccgatccc gccggtcaag
     2101 ccgatgctga acatcgttca actccctttt cgtttcgttt tatccgccga acattgcgta
     2161 aagcggcgta ccgaaaaata acgtaatcac gcctcctgcc gcaagaaacg gcccgaacgg
     2221 cagcggttct tcaaagcgca tcttgccaat acccgttgcc gccagtccga agatcgcgcc
     2281 cgctatcgcc gacaccagca ctacttgcgg cagcgcttgc cacccaagcc acgcgcctag
     2341 cgcgccgagc agcttgaagt cgccgtatcc catgccttcc acgccgcgta cgagcctgaa
     2401 cagccaatac acgcaccaga gaaacagata acccgcgatc gcaccgataa ccgcttcgtg
     2461 cagcgggacg aacgcagtgt cgccgagatt gacgatcagg ccagcccaca gcagcggtaa
     2521 ggtcagcatg tcgggcagat agcgggtatc gaagtcgatc aggctcgcgg ccagcagcgt
     2581 cgcgcataaa ccaaacgcgg tcagcgcgat cagcgtgggt ccgaacgcaa acagcgatag
     2641 cgcggcaaac agcgcggtgg ccagtt
//
LOCUS       DATGBK010000435         3279 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_282920, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000435 DATGBK010000000
VERSION     DATGBK010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3279
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282920"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1325
                     /gene="hflK"
                     /locus_tag="VKJ77_06305"
     CDS             <1..1325
                     /gene="hflK"
                     /locus_tag="VKJ77_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HMC44917.1"
                     /translation="EGPPDLDEMWRDFNKKLAGLFGKKPAGGGPRADNGRGAKIGMGI
                     IVGVLIAIYLGSGVFVVQDGNVGVVSRFGKYEESADAGIHWRLPYPFESHEIVNTSQI
                     RSVEVGRNNTVTQANVRDASLLTHDADIVDVRFAVQYQIKSATDYLFRNVDPDQNVTE
                     SAQAAIREIAGTHSTDDLLFKDREALRAKLVDTIQASLDLYKTGLQVTGVTIESVQVP
                     AQVQPAFEDAAKVRQDNERAVDTAKAYADQLLPRAKTDAARMIDDAKGYSNRVVSQAQ
                     GNAERFKQVYAEYSKAPAVIRQRMYLDTMQQIYSRATKVFVDSKSSNNVVYLPLDKLV
                     DANRQNANAAAAGTVPPGASGVAAGTVPSGANQPVGAAPTGVIGGNITQDARAESASA
                     ASAVTAQSAAPASAAASAAASGASAQSSGDPSRSRDAFRSRSREDDTQ"
     gene            1337..2251
                     /gene="hflC"
                     /locus_tag="VKJ77_06310"
     CDS             1337..2251
                     /gene="hflC"
                     /locus_tag="VKJ77_06310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018417570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HMC44918.1"
                     /translation="MNRIIALVVAVVVVLFIGSSMMFVVDERHAGVVTAHGGGTPTLV
                     TPGLHFKLPPPFQTLTLIDTRTLTLDEAGSDRFNTSDKNEVIVNTVIKYRVADPLKLF
                     ESNEKNTQTAQDRLAALTRTALTSSFTKRSLTDVLGEQQAIATEAQKTIEQPAAAFGV
                     ELVDLQLTRIDFPPAVADSVYKRMIAARQQAAAEERAKGTADADALKASAERQQEAIL
                     ADAYKEAQTIKGEGDGKAASIAADAYGVDPQFYQFYQSLEAYKKTFNAGDVMVVDPSS
                     DFFRFMRSPNGAAPSGTDATTPALARKR"
     gene            2296..2487
                     /locus_tag="VKJ77_06315"
     CDS             2296..2487
                     /locus_tag="VKJ77_06315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010092260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 domain-containing protein"
                     /protein_id="HMC44919.1"
                     /translation="MDMAASLLLAIALMLIIEGMFPFVFPNSWRDTFRRIAQRPPHQI
                     RIGGLIAMVLGVILLIIAT"
     gene            2613..>3279
                     /locus_tag="VKJ77_06320"
     CDS             2613..>3279
                     /locus_tag="VKJ77_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HMC44920.1"
                     /translation="MSTWLLPENIADVLPSEARKIEELRRRLLDRFRSYGYELVMPPM
                     LEYLESLLTSGGSDLNLRTFKLVDQLSGRTLGLRADITPQVSRIDAHLLNRQGVTRLC
                     YAGNVLHTRPRGLHATREQIQIGAEIYGHAGLEADLEIQQLMLDSLRLSGLDKVRLDL
                     CHAGVLSALLDLEPAAAALGEALFDALGAKDVPRLNELTAKLGDVTRDALRALPSLYG
                     DASV"
BASE COUNT          637 a          988 c         1037 g          617 t
ORIGIN      
        1 gtgaaggccc gccggatctg gacgaaatgt ggcgcgattt caacaagaag ctcgccggtt
       61 tgttcggcaa gaaaccggca ggcggcggtc cacgtgccga caacggccgc ggcgccaaga
      121 tcggcatggg cattattgtc ggcgtgttga tcgcgatcta tctgggcagc ggcgtattcg
      181 tcgtacagga cggtaatgtg ggtgtggtgt cgcgcttcgg aaagtatgaa gagtcggcgg
      241 acgcgggcat tcactggcgt ctgccgtatc cgttcgagtc gcacgagatc gttaatacat
      301 cgcagatccg gtcggtcgaa gtcgggcgca acaacaccgt gactcaggcc aacgttcgtg
      361 atgcatcgct gctgacgcac gacgcggata tcgtcgacgt gcggtttgcc gtgcagtatc
      421 agatcaagtc ggcgaccgac tatctgttcc gcaatgtcga tcctgatcag aacgtgacgg
      481 aatcggcgca agccgcgatt cgcgagatcg cgggcacgca cagcaccgac gacctgcttt
      541 tcaaggatcg cgaagcattg cgcgcgaagc ttgtcgacac catccaggca tcgctcgatt
      601 tgtacaagac gggcttgcag gtgacgggcg tcaccatcga gagcgtgcag gtgccggcgc
      661 aggttcagcc agcgtttgaa gatgccgcga aggtgcgcca ggacaatgag cgcgcggtcg
      721 acaccgcgaa agcctacgca gatcaactgt tgccgcgcgc gaagaccgac gcggcgcgca
      781 tgatcgacga cgcgaagggc tatagcaacc gggtcgtttc gcaggcgcaa ggcaatgccg
      841 agcgcttcaa gcaggtctac gcagaatatt cgaaggcgcc ggcagtgatt cgtcaacgca
      901 tgtatctgga cacaatgcag cagatctatt cgcgtgcgac gaaggtgttc gtcgacagca
      961 agagctcgaa caatgtggtg tacctgccgc tcgacaagct cgtcgatgca aaccgccaga
     1021 acgcgaacgc agccgctgca gggacggtgc ctccgggcgc atcaggtgtt gctgcaggga
     1081 cggtgccttc gggcgcgaat caaccggtcg gcgctgcgcc taccggcgtg atcggaggga
     1141 atatcacgca ggatgcacgt gccgaaagcg catcggcggc ttcggccgtg actgcacagt
     1201 ccgccgctcc cgccagcgct gcagcttccg ctgctgcctc gggcgcgtcc gcgcagtcgt
     1261 cgggtgatcc atcgcgctcg cgcgatgcgt tccgttcgcg ttcgcgcgaa gacgacacgc
     1321 aatgaggagc gcgatcatga atcgaattat tgcgctcgtc gtagccgtgg tggttgtgtt
     1381 gttcatcggc tcgtccatga tgttcgtggt cgacgaacgc catgcgggtg tggtcaccgc
     1441 acatggcggc ggcacgccca cgcttgtcac gcccggcctc catttcaagc tgccgccgcc
     1501 gttccagacg ctgacgctga tcgacactcg tacactcacg ctcgacgaag caggctcgga
     1561 ccgcttcaat acgtcggaca aaaacgaggt gatcgtgaat acggtcatca agtatcgcgt
     1621 ggctgatccg ctcaagctgt tcgaaagcaa cgagaagaac acgcagacgg cacaagaccg
     1681 gctggccgcg ctcacgcgca cggcgttgac gtcgtcgttc actaagcgtt cgctgacgga
     1741 tgtgctcggt gagcagcagg ccattgcgac cgaagcgcag aagacgatcg agcagccggc
     1801 agcggcgttc ggcgtggaac tcgtcgacct gcaactgaca cgcatcgact ttccgccggc
     1861 agtggccgat tcggtctaca aacgcatgat cgcggcgcgc cagcaagcgg cggccgagga
     1921 gcgcgcgaag gggacggccg acgccgatgc gctgaaagca agcgcggagc gccagcagga
     1981 agccattctt gccgatgcct acaaggaagc gcagaccatc aagggtgagg gcgatggcaa
     2041 ggctgcgtcc attgctgccg atgcatacgg cgtcgatccg cagttctacc agttctatca
     2101 aagcctcgaa gcgtataaaa agaccttcaa tgccggcgac gtgatggtcg tcgatccgag
     2161 cagcgatttc ttccgcttca tgcgcagccc gaatggtgct gcgccgagcg gcaccgatgc
     2221 caccaccccg gcgctcgcgc gcaagcgctg agtttgtcca tgcgccgcgg cgagagccgc
     2281 ggcgccttca atcgaatgga tatggctgca tcgttactgc tcgcgattgc gttgatgctg
     2341 attattgagg ggatgtttcc gttcgtcttc ccaaactcct ggcgcgacac gttccgccgg
     2401 atcgcgcaac ggccgccgca ccagattcgc atcggtgggc tgatcgccat ggtgcttggc
     2461 gttatcctgc tgattatcgc gacgtgacgc ttgcaacctg aaacttcaaa gcgggtcgac
     2521 gtgcagtctc cagtcgccca tagactcaaa gcttgcgctc acccgcggcg agaatccccg
     2581 ccgcgctcaa acgctccgta ggaaacgcat cgatgtccac ctggttactt cccgagaata
     2641 tcgccgacgt cttgccgtcc gaggctcgca agattgaaga attgcgccgt cggctgctcg
     2701 accgttttcg ttcgtacggc tacgaactcg tcatgccgcc catgctcgag tatctcgagt
     2761 cgttgcttac cagcggcggc agcgacctga acctgcgcac gttcaagctc gtcgatcaat
     2821 tatccggccg cacgcttggc ctgcgtgctg acattacgcc gcaggtctcg cgtatcgacg
     2881 cgcatttgct gaatcggcag ggtgtgacac gcctttgtta cgcgggcaat gtgctgcata
     2941 cgcgcccgcg cggtctgcac gctacacgcg agcagatcca gatcggcgcg gaaatctacg
     3001 gccatgcggg actggaagcg gatctcgaga tccagcaact gatgctggat tcactgcgtc
     3061 tgagcggcct cgataaagtg cgcctcgacc tgtgccacgc gggcgttttg tcggcgttgc
     3121 tggacctgga gccggctgca gcggcgctcg gtgaggcgct gtttgacgcg ctcggtgcga
     3181 aggatgtgcc gcgtctgaac gaactcacgg ccaagctcgg cgatgtgacc cgggacgcgt
     3241 tgcgcgcttt gccgtcgctg tatggcgacg cttccgtgc
//
LOCUS       DATGBK010000436         2918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_51660, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000436 DATGBK010000000
VERSION     DATGBK010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51660"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..>2918
                     /locus_tag="VKJ77_06325"
     CDS             41..>2918
                     /locus_tag="VKJ77_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008448555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HMC44921.1"
                     /translation="MTMLAAFGTLLQGYSGQDDVRVGVPVAGRDRMETEPLIGFFVNT
                     LVIRMTTRRTEPFSALLAEVRDRVVGAQAHSGVPFAKLVELLQPQRSISHTPLFQVMF
                     NYSAEPRSKIELPGIEVSTLVGGTGTAQFDLSLDVSANGDGLRVTLNYATDLFDAATA
                     TRLLDSYIAVLETIARQPNTRAVPLLGDREEQQLLAWGRNDQTFAQAEPVHHLFERQA
                     MKTPDAVALVFGNQTLTYRQLDEQANRLAHKLVRLGVRPEVKVGIGMERCVEMVVGLL
                     AVLKAGGAYVPLDPQYPAERLAYMVAHSDVRLLLTQSAAIQRFSANDQTLRTLALDAL
                     NLEDEPSHKPHVDVHGHNLAYVIYTSGSTGQPKGVMVHHHALSHFIHGMQSKPGLASD
                     DVLVAVTSLSFDIAALELYFPLVVGARIVLATREVARDGAALARLVQDSMATVLQSTP
                     AGWRLLRAGGWPQAPLAGFKGLCGGEALQPDLARDLNEQGIELWNMYGPTETTIWSAA
                     SRVLDAAPGLGSPIAGTQLYVLDSSMALVPPNVPGELYLGGAGLARGYIGQGGLTSER
                     FVADPFNGNGARLYRTGDLVKWRGDGRLEYLGRIDHQVKIRGFRIELGEVEAQLLAQP
                     EVGEAVVVAHEGTGGARLVAYVSHRAGQHADTVALGGQLREKLIAVLPEYMVPGLIVV
                     MDRLPLNTNGKVDRHALPLPQQTERIWAAPKGDMETVLAGVWQNVLRVERIGRHDNFF
                     EMGGQSLLALRAVAALREALKVELPVQKLFAYPVLADLARAIERDARGTMTGALATLP
                     GVISARPEGMLITKLSPAQERLWFFSRLSPQSAAYNLTGAVKLEGALDRDVLRKAVAA
                     LVARHESLRTRFVEVDGVAMQQVDVIEPGWSVLDLEDVPQESRAQRVADTINAISRAP
                     FSLEQGPLFRVTLIRLGDCEHVLHFVTHHIISDAWSNRIILDEFS"
BASE COUNT          535 a          836 c          986 g          561 t
ORIGIN      
        1 tctcgatcaa cgctcccaag agcatggcgc cacgcgcttt atgaccatgc ttgctgcctt
       61 tgggacactg ctgcaaggct atagcggaca ggacgacgtc cgtgtcggcg tgccggtagc
      121 agggcgcgac cggatggaaa ccgagccgct gataggcttc ttcgtcaaca cgctggtaat
      181 ccgcatgacc acgcgccgga ccgagccgtt tagcgcgttg ctcgccgagg tgcgggaccg
      241 ggtggtcggc gcgcaggcgc attctggcgt cccgtttgcg aagctggttg aactactgca
      301 gccacagcgc agtatcagtc acacgccgct gttccaggtg atgtttaact acagcgcaga
      361 gccgcgttcg aaaatcgagc tgcctggtat cgaagtgagc actctagttg gcggcacggg
      421 aacggcgcag ttcgacctgt cgctggatgt atcggccaac ggcgatggcc tccgggtcac
      481 tttgaattac gcaaccgatc tcttcgacgc ggcgacggct acacgcctgc tcgatagtta
      541 catcgctgtg ctggagacaa tcgcgaggca gccgaacacg cgtgcggtgc cgctgctggg
      601 agaccgcgag gagcagcaac tcctggcgtg gggccgcaac gaccagacgt ttgcgcaggc
      661 agagccggtg caccacttgt tcgaacgtca ggcgatgaag acgcccgatg cggtcgcact
      721 ggtgttcggc aaccagacac tcacctaccg ccaactcgat gaacaggcta accggctcgc
      781 gcacaaactg gtgcggctgg gggtacgacc cgaggtgaaa gtcggtatcg gcatggagcg
      841 ttgcgtggag atggtggtcg gcttgctggc cgtattgaag gcgggcggtg cctatgtgcc
      901 gctcgacccg cagtatccgg cagaacgtct ggcgtatatg gtggcccata gcgacgtgcg
      961 tttgttgctc acgcaaagtg cagctataca gcgcttcagc gcgaacgatc agaccctgcg
     1021 gacgctggca ctcgacgcgc tgaatcttga agatgaacca tcgcacaagc cgcacgtaga
     1081 tgtgcatgga cacaacctgg cctacgtcat ctatacctcg ggttccaccg gtcagcctaa
     1141 gggcgtgatg gttcatcacc atgcgctcag ccacttcatt catggcatgc agtcaaagcc
     1201 cggccttgca tctgacgatg tactggtcgc ggtgacctcg ttgtcattcg atattgccgc
     1261 gctcgagttg tacttcccgc ttgtcgtcgg cgcgcggatt gtcctggcta cgcgagaggt
     1321 ggcccgagac ggcgcggcgc tggcacggct ggtgcaggat tcgatggcaa cggtgttgca
     1381 gtcgaccccc gccggctggc ggttgctgag ggccggtggc tggccgcagg cgccgctcgc
     1441 gggcttcaaa gggctgtgcg ggggcgaggc attacagccc gatctggcac gcgacctgaa
     1501 cgagcagggc atcgagctat ggaacatgta cggcccaacc gagaccacga tctggtcggc
     1561 ggcctcgcgc gtgctggatg ccgcgccggg tctgggcagt cctatcgcgg gaacgcagct
     1621 ttacgtcctc gattcgagca tggcgctcgt tccgcccaac gtgccgggcg agttgtacct
     1681 cggcggtgcg gggctggcgc gcggttatat cgggcagggc ggactgacgt cggagcgatt
     1741 cgtggcggac ccgttcaacg gcaacggcgc gcgcctgtat cggacaggcg atcttgtgaa
     1801 gtggcggggc gacggtcgcc ttgaatatct ggggcgtatc gaccatcagg tgaagatccg
     1861 tggctttcgt atcgaactgg gggaagtcga ggcgcagttg ctggcacagc cggaggtagg
     1921 cgaagccgtt gtcgtggcgc acgaagggac cggcggggcg cggttggtgg cgtacgtgtc
     1981 gcatcgggcg gggcagcacg cagacactgt cgccctcggc gggcagttga gagaaaagct
     2041 gattgcggtg ctgccggagt acatggtacc cggtcttatc gtagtcatgg accgcctgcc
     2101 gttgaacacg aacggtaagg tggatcgcca cgcgctgccg ttgcctcagc aaaccgagcg
     2161 gatctgggca gcgccgaagg gcgatatgga aaccgtgctc gcgggcgtgt ggcagaacgt
     2221 gttgcgcgtc gaacgtattg gccgtcacga caatttcttc gagatgggcg ggcaatcgtt
     2281 gttggcattg cgcgcggtag ctgcgctgcg tgaggcgttg aaagttgagt tgccggtgca
     2341 gaagttgttc gcgtatccgg tactggcaga tctggcacgt gcgatcgaga gggacgcacg
     2401 aggcacgatg accggggcac tcgctacgct gcccggcgtg atctccgcaa gaccagaagg
     2461 aatgctaata accaagctgt cgcctgcaca ggaacggctg tggtttttct cgcgcctgag
     2521 tccgcagagt gccgcgtaca acctgacggg tgcagtgaag ctggaaggcg cgctcgatcg
     2581 cgacgtcctg cgtaaagcag tcgcggccct cgtcgcacgt catgaaagct tgcgcacgcg
     2641 tttcgttgaa gtcgatggcg tggcgatgca gcaagtcgat gtcatcgagc cgggttggtc
     2701 ggtgctcgat cttgaagatg tcccgcagga aagcagggcc cagcgcgtag ccgataccat
     2761 aaacgcgatc tcccgtgcac ctttctcgct ggagcaagga ccgctgttcc gcgtcacgct
     2821 gatccggctg ggcgactgcg aacacgtgct tcatttcgtg acgcatcaca tcatctcgga
     2881 tgcatggtcg aaccggatca tcctcgacga gttctcgc
//
LOCUS       DATGBK010000437         1887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_4891, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000437 DATGBK010000000
VERSION     DATGBK010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4891"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1086)
                     /gene="paaN"
                     /locus_tag="VKJ77_06330"
     CDS             complement(<1..1086)
                     /gene="paaN"
                     /locus_tag="VKJ77_06330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006406900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetic acid degradation protein PaaN"
                     /protein_id="HMC44922.1"
                     /translation="MTHPLFTKHEATLNQALAAIATRGYWSPFPEMPSPKVYGETASS
                     DGEAAFKAHLNRTFDLDQPTTSETIGNERSPFGLALGIRYPKANVDALLAASGAAQSQ
                     WRAAGPDAWAGVSLEILTRLNKASFEIGYSVMHTTGQAFMMAFQAGGPHAQDRALEAV
                     AYAWDELRRIPADAYWEKPQGKNPPIAMHKRFTIVPRGTGLVLGCCTFPTWNGYPGMF
                     ADLATGNTVIVKPHPGAILPLAITVRIARDVLREAGFDPNVVTLLATEANDGPLVQDL
                     ALRPEIRLIDFTGSTQNGNWLERHAHQAHVYTEKAGVNQIVIDSVDNLKAVASNIAFS
                     LALYSGQMCTAPQNIYVPRDGIHTSDGH"
     gene            1217..>1887
                     /locus_tag="VKJ77_06335"
     CDS             1217..>1887
                     /locus_tag="VKJ77_06335"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HMC44923.1"
                     /translation="MAYENLLTEVRGRVGLITLNRPKALNALNDALMDELGVVLKQFD
                     ADENIGAIVLTGSEKAFAAGADIGMMAGYSYMDTFKGDYITRNWETIRTIRKPIIAAV
                     SGFALGGGCELAMMCDIIIAADTAKFGQPEIKLGVIPGAGGTQRLPRAVSKAKAMDMC
                     LTARMMGAEEAERAGLVSRVVPAASLLDEAMEAASIIASFSLPAVMMAEESVNRAYES
                     TLADGV"
BASE COUNT          364 a          526 c          611 g          386 t
ORIGIN      
        1 gtggccgtcg ctcgtgtgga tgccgtcgcg cggcacgtag atgttttgcg gcgccgtgca
       61 catttggccg gagtacaacg ccagcgagaa cgcgatattg ctggcaacgg ctttgagatt
      121 atcgacggaa tcgatcacga tttgattcac gccggccttc tccgtgtaga catgcgcctg
      181 atgcgcatgg cgctcgagcc aattgccgtt ttgcgtgctc ccggtgaaat cgatcagcct
      241 gatttcggga cgcagcgcaa gatcctgcac gagggggcca tcgttcgctt cggtcgcaag
      301 cagggtgacc acgttcgggt cgaatcccgc ttcgcgcaaa acgtcgcgag cgatgcgtac
      361 cgtaattgcc agcggcagga tggcgccagg atgcggcttg acgatgaccg tgttacccgt
      421 ggccagatcg gcgaacatcc ccggatagcc gttccaggtg gggaatgtgc agcacccgag
      481 cacaagaccc gtgccgcgcg gcacgatcgt gaaccgcttg tgcatcgcga tcgggggatt
      541 cttgccttgg ggcttttccc aataagcgtc ggcgggaatt cggcgaagct cgtcccacgc
      601 ataggccact gcttcgagcg cgcgatcctg tgcatgtgga ccgcctgcct gaaaggccat
      661 catgaatgcc tgcccggtcg tgtgcatgac gctgtagccg atctcgaaac tcgccttgtt
      721 cagccgggtc agtatttcaa ggcttacgcc cgcccacgcg tcggggccgg ccgcgcgcca
      781 ctggctttga gccgccccgg atgcagccag cagtgcgtcg acgttcgctt tcggatagcg
      841 aattccgagc gcgagcccaa agggcgaacg ctcattgcca atcgtctcgc tggttgtcgg
      901 ctggtccaga tcgaacgtcc ggttcagatg tgctttgaag gccgcctcgc cgtccgaact
      961 agccgtttca ccgtacactt tgggactcgg catttcggga aacgggctcc agtagccacg
     1021 tgttgcaata gcggcaagcg cttgattaag cgtcgcttcg tgcttcgtga atagcggatg
     1081 tgtcatggcg gcaaggggtg agtaacggtg atggacgccc gatcaattaa ttgaccgacc
     1141 ggttggtttg cgaatgttag cattttcgag acgcgtgcgc gaagcgtttt tgcgcgagtt
     1201 cacataggag gaatgaatgg cttacgagaa tctattgacc gaagtccgcg gacgagtcgg
     1261 cttgatcacg ctgaaccggc ccaaggcgct caacgcgcta aacgatgccc tgatggatga
     1321 gctcggcgtc gtgctgaagc aattcgatgc cgacgagaac attggcgcga tcgtgctgac
     1381 cggcagcgaa aaagcattcg cggcgggggc ggacatcggc atgatggccg gctactccta
     1441 tatggacacg ttcaagggcg actacatcac gcgcaactgg gagacgatac gaactattcg
     1501 caagcccatc attgcggcgg tgtcgggctt cgcgcttggt ggcggctgcg agctggccat
     1561 gatgtgcgac atcatcattg ccgccgatac cgccaagttc ggtcaaccgg aaatcaagct
     1621 tggcgtgatt ccgggtgccg gcggcacgca gcgcctgccg cgcgcagtgt cgaaggcgaa
     1681 ggcaatggac atgtgcctga ccgcgcgcat gatgggcgct gaagaggcgg agcgcgctgg
     1741 cttggtatcg cgtgttgtgc cggcggcaag cttgctagac gaagcaatgg aagcagcatc
     1801 gataatcgcg agcttctcgc tgcctgcggt aatgatggcg gaggagtccg ttaatcgcgc
     1861 atatgaatcg acgttggcag atggggt
//
LOCUS       DATGBK010000438         3194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_329239, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000438 DATGBK010000000
VERSION     DATGBK010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3194
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329239"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..588)
                     /locus_tag="VKJ77_06340"
     CDS             complement(70..588)
                     /locus_tag="VKJ77_06340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HMC44924.1"
                     /translation="MRDVLIERFGLQPHPEGGYFRETFRGADRVVRELTCEASPGETR
                     SASTAIYYMLCDGAHSAWHRIRSDEVWHFYAGEPIDVHVISSTGQLLTHRLGDALTHH
                     DAVFQAVVPAGQWFAAELCDPASFALVGCTVAPGFEFSEFELADVAALAKAYPQHEAV
                     IGRLGPAVRTKR"
     gene            complement(601..1362)
                     /locus_tag="VKJ77_06345"
     CDS             complement(601..1362)
                     /locus_tag="VKJ77_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44925.1"
                     /translation="MNIHAVRAIYVFEMARTWRTIMGSIISPVISTSLYFVVFGAAIG
                     SRIPEVNGVSYGAFIVPGLVMLSLLTQSVSNASFGIYFPRFTGTIYELLSAPVSYMEI
                     VLSYVGAAATKSIILGLIILATARLFVPLHVDHPFWMIVFLLLTAVTFSLLGFIIGIW
                     ADGFEKLQVIPLLIITPLTFLGGSFYSIDILPPFWKAVALFNPVVYLISGFRWSFYGT
                     ADVSVEISLVMTLVFLAVFIGVVAWIFKTGYRLKS"
     gene            complement(1359..2285)
                     /locus_tag="VKJ77_06350"
     CDS             complement(1359..2285)
                     /locus_tag="VKJ77_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44926.1"
                     /translation="MQNIIEISNLSKSYASGFKALKNVTLNIRRGEIFALLGPNGAGK
                     TTLISIVCGIVNATEGTIRVNGHGIISDYRASRAMIGLVPQELTTDAFESVWATVSFS
                     RGLFGKPPNPAHIEKVLKSLSLWDKKDNKLVTLSGGMKRRVLIAKALSHEPEILFLDE
                     PTAGVDVELRRDMWNLVRGLKASGVTIILTTHYIDEAEEMADRIGVINGGEIILVEEK
                     AELMRKLGQKKLALQLEDEIEHIPAGLSAYRLHLSADGSELTYTYDAQDEPGRIITLL
                     KDLADNGVKFKDLQTTQSSLEDIFVSLVGEKK"
     gene            2466..2888
                     /locus_tag="VKJ77_06355"
     CDS             2466..2888
                     /locus_tag="VKJ77_06355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1810 domain-containing protein"
                     /protein_id="HMC44927.1"
                     /translation="MTDPFDLQRFIDAQDPLFQTVTAELEAGKKRTHWMWFVFPQIQG
                     LGHSEMARRYAISSVDEARAYLAHPVLGERLLILTQIVNALDGRSVEQIFGYPDDLKF
                     HSSMTLFAHAARDKAPFELALNTYFGGEPDAGTVARLR"
BASE COUNT          658 a          978 c          897 g          661 t
ORIGIN      
        1 ttcgttctgc ttttacattg ttcgctttgt acgcgttgta ggcatcgtgt gccgtgcatc
       61 ggcacgcgct cagcgcttcg ttcgtaccgc cggacccaac cttccgatca cggcctcgtg
      121 ctgcggatac gcttttgcca aagcagccac atcggcaagt tcgaactcgc tgaattcgaa
      181 acccggcgcg accgtgcagc ccaccagcgc gaacgacgcc ggatcacata actcagccgc
      241 aaaccactgc cctgctggca cgaccgcctg gaatacagcg tcgtgatgcg tcagcgcgtc
      301 acccaaacga tgtgtgagca actgcccggt ggaactgatg acatgaacat cgattggctc
      361 tcctgcatag aagtgccaca cctcatccga gcggattcga tgccacgccg aatgtgcgcc
      421 atcgcaaagc atgtagtaaa tcgccgtcga tgccgagcgc gtttcgcccg gcgaagcctc
      481 gcacgtgagc tcgcgcacta ccctgtccgc gccgcgaaat gtctcgcgaa aatagccgcc
      541 ttctgggtgc ggctggagcc cgaaccgttc gatcaacacg tcacgcatca gccacgctcc
      601 ctatgatttc agcctgtaac ccgttttgaa gatccacgcg accacgccga taaacactgc
      661 gagaaacacc agcgtcatga cgaggctgat ctcgacgctg acatcggcgg tgccgtagaa
      721 actccagcga aacccgctga tcaggtagac caccgggttg aacagtgcga cggctttcca
      781 gaacggcggc aggatgtcga tcgaataaaa actcccgccc aggaaggtta gcggcgtgat
      841 gatgagcagc ggaatcacct gcagcttctc gaatccgtcc gcccagatgc caatgatgaa
      901 tcccagcaag ctgaacgtca ccgccgtcag cagcaggaac acaatcatcc agaacgggtg
      961 atcgacgtgt aacggcacga acaaccgcgc ggtcgcaaga atgataaggc cgaggatgat
     1021 cgacttggtg gcggccgcgc caacgtagct cagcacgatc tccatatacg agaccggcgc
     1081 cgacagcagt tcgtagattg tccccgtaaa cctggggaaa tagatgccga acgacgcgtt
     1141 ggacacgctc tgtgtgagca gcgacaacat cacgagccct ggcacgatga acgcgccgta
     1201 actcacgccg ttcacttcgg gaatacgcga gccgatcgcg gcgccgaaca cgacgaaata
     1261 cagcgacgtg gaaatcaccg gcgagatgat gctgcccatg atggtgcgcc aggtgcgcgc
     1321 catttcgaat acatagattg cgcggactgc atgaatattc attttttctc tccgaccagg
     1381 ctcacgaaaa tatcttccag cgagctttgc gtcgtttgca ggtccttgaa cttgacgccg
     1441 ttatcggcaa ggtctttcag cagcgtgatg atgcggcccg gttcatcctg cgcgtcgtag
     1501 gtgtaggtca gttcgctgcc gtcggcggac aggtggagcc ggtaagcact caggccggca
     1561 ggaatgtgct cgatctcgtc ttccagttgc agcgcgagtt tcttctggcc gagcttgcgc
     1621 atcagttcag ctttttcctc gaccagaatg atctcaccgc cgttgatcac accaatccgg
     1681 tcggccattt cctcggcttc atcaatgtag tgcgtcgtca ggatgatcgt cacgccgctc
     1741 gctttcaggc cgcggacaag attccacata tcgcggcgca gttcgacgtc aacgcctgcg
     1801 gtcggttcgt ccaggaacag gatttccggt tcgtgcgaga gcgccttggc aatgagcacg
     1861 cggcgtttca taccgccgga tagcgtgacc agcttgttgt ccttcttgtc ccagagcgac
     1921 agcgacttca gcaccttttc tatgtgagcc ggatttggcg gcttgccgaa caggccgcgg
     1981 ctgaatgaaa cagtcgccca gaccgactcg aaggcgtcgg tggtcagctc ctgcggcacg
     2041 aggccgatca tcgcgcggga ggcgcggtag tcggagataa tgccgtgacc gttgacccgg
     2101 atcgtgcctt ccgtggcatt tacgatgccg cacacaatgc tgatcagggt ggttttaccg
     2161 gcgccgttcg gccccagcag tgcgaagatt tcgccacggc ggatattcag cgtgacgttt
     2221 ttcagcgcct tgaagccgga cgcatagctc ttcgacagat tcgaaatttc gatgatgttt
     2281 tgcatggccg tgaagatatc agaaagcgga atatcgttcg caaatggccg ggattggatc
     2341 tggagccacg tggccgcatg tccacgaaaa gcgccgggaa cgtggttcgc ggcgccgttt
     2401 tgcggcacgt ttcgcaccca tttcgcggca atattccaga acatccgcaa gaaccggagg
     2461 cgcgcatgac cgatcctttt gacttgcaac gttttatcga tgcccaggat ccgctgttcc
     2521 agacggtgac ggccgagctc gaggccggca agaaacgtac acactggatg tggttcgtgt
     2581 ttccgcagat ccagggactg ggccacagcg aaatggcgcg ccgctacgcg atttcatcgg
     2641 tcgacgaagc gcgggcctac ctcgctcatc cggtgctggg cgagcgcctg ctgatcctca
     2701 cgcaaatcgt gaatgcgctc gacgggcgct cggtggagca gattttcggt taccccgacg
     2761 acctgaaatt ccattcgtcg atgaccctct tcgcccacgc cgccagagac aaggctccgt
     2821 ttgaactagc gctgaatacc tatttcggcg gagagccgga cgcgggaacg gtagcgcgcc
     2881 tgaggtaagc ggaaaatcca ctccccgcgg atctcgtccg acgaaacgtt acaattcgcg
     2941 tcgacgcaca ttcgccgcct gccaatccca cgaggatccg tgacggcttg cgtcactggc
     3001 cgcatttatc gatggcacgg tcagccaagc ctggaacact cttctgttcg cttcgctttg
     3061 tcgttgtttg cccagcgccg tgtgcccccc tgcaccccgg ccctctgggc gacgccctta
     3121 tcaatcagtc aggatcgtct ctccatgctt tcgcgcgtca cccgcttgtt ccctctttgg
     3181 gccgttctca tttc
//
LOCUS       DATGBK010000439         3161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_121084, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000439 DATGBK010000000
VERSION     DATGBK010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3161
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121084"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1192
                     /locus_tag="VKJ77_06360"
     CDS             <1..1192
                     /locus_tag="VKJ77_06360"
                     /inference="COORDINATES: protein motif:HMM:NF013166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thioesterase domain-containing protein"
                     /protein_id="HMC44928.1"
                     /translation="GYMVPSVLVWLERLPLMQNGKLDRAALPEPGDRKNAEKTAPCTP
                     LEAQLLGIWQEVLGHDDLGVTDNFFEAGGHSLLALKVLAKGTQSGLTSLTLEALFQHA
                     TVRTLAAYLAAQREAGAEDSGHAANVVSMSERTDAPIVFAIHPASGLVADYRPLAAAL
                     DGVANVYGVQAPFYTEDWWPGDLSELAADYAARIRTVQPVGPYRLIGWSVGGVIATEV
                     ARVLARDGGEVPFVGLIDAHVLRAEDHGDAREGNDEAPVTHEQMRTYRATDHELQKVL
                     DDAGKKWPSMQGELSDAGTRALLSKVMLFQRHLGHIVRHTERAPLPVDLDLWWARHRP
                     YRSAREATAMWSAHSTGRVSVANEIDADHTHIVRHSDLFDDLARALASSALGDHDHRP
                     EHLS"
     gene            1189..>3161
                     /locus_tag="VKJ77_06365"
     CDS             1189..>3161
                     /locus_tag="VKJ77_06365"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC44929.1"
                     /translation="MSTHNLTGTWQSGEAGMATRLRTLAFERPDATALITIDAAGETQ
                     YDYAELDRRAASVAAHFDKQRAAGERALILMDSGVDYVSAFFGCLYAGVVAVPVYPPE
                     SKREQHLARLRGIAQDAGVRYVLTTSALQERFADQYGELAPDAEIIAVDTLCVASASA
                     DTGAFALHDVQPSDIAFLQYTSGSTGTPKGVMVSHGNLIANETAIKAGLGVQSDDVFV
                     SWLPLYHDMGLIGSLLQPVFSGIPLVLMSPQYFLERPLRWLQAIARYRGTISGAPDFA
                     YRLCAERLRDNAITQLDLSSWRLAFSGSEPVRRDTLDAFVARFASVGFDAAALYPCYG
                     LAEATLFVTGGRRGAGLISARFESDALSAARVAVTSESEPGTVLVACGAPQPGHVIEV
                     VDPVSGDTLISGQIGEIHVSGPSVAHGYWQRADVSASTFRTDGATRWLRTGDLGFVHD
                     GQLYIAGRCKDLIIVRGKNLYPQDIEQAVEARCEFVRKGRVIAFAADIDGAEGPALAL
                     EIAPMMKKRFTAADIVAQLNRCVFDACGEIPIAVMLLNPAALPKTSSGKLQRAATRQG
                     WQDRTLDNYAIWEHGHFVMGAAEPEADKLQAPLDGFEKELAALWSEVLESEIVKHDAH
                     FFASGGSSLTAARLAARIGERWRRPFEIGQVFE"
BASE COUNT          563 a          929 c         1052 g          617 t
ORIGIN      
        1 gggctacatg gtgccgtcag tgctggtgtg gctcgagcgg ttgcctctca tgcagaacgg
       61 caagctcgat cgagccgcgt tgcctgagcc gggcgaccgg aagaacgctg agaaaacggc
      121 accatgtacg cctcttgagg cgcagttgct tggcatctgg caagaagtgc tggggcacga
      181 tgacctcggt gtcaccgata atttcttcga agcaggcgga cattcgctcc tcgcgctcaa
      241 ggtgctcgcc aagggtacac agtccggctt gaccagcctg acgctcgaag cgttgttcca
      301 gcacgccacg gttcgcacgc tcgcggcgta tctagccgca cagcgcgagg ccggcgcaga
      361 ggactcaggg cacgccgcga atgttgtatc gatgagcgag cgcaccgacg caccgatcgt
      421 cttcgcgatc catccggcgt cgggtctggt cgcggactac cggccgcttg ccgcggccct
      481 cgatggcgtc gcgaacgtgt atggcgtgca ggcgccgttt tatacggaag actggtggcc
      541 cggtgatttg tcagagcttg ctgccgacta cgctgcgcgt attcgtacag tgcaaccggt
      601 cgggccatac cggttgatcg gctggtcggt gggtggcgtg atcgcgactg aagtggcacg
      661 tgtgctggca cgcgacggtg gcgaagtgcc gttcgtcggc ttgatcgatg cgcatgtgct
      721 cagggccgag gaccatggtg acgcccgcga aggtaacgat gaagccccag tgactcacga
      781 acagatgcgc acgtatcgcg ccacggatca tgagctgcag aaggtgctcg acgatgccgg
      841 caagaaatgg ccgtcaatgc aaggcgaatt gtccgatgcc ggcactcgcg cgctgctcag
      901 caaggtgatg ttgttccagc gacacctggg tcatatcgtc cgccacacgg agcgtgcgcc
      961 attgccggtt gacctggatc tgtggtgggc acggcaccgg ccttaccgct ctgcacgcga
     1021 agcgacggct atgtggtcgg cgcactcgac gggccgcgtg tcggtggcca acgagatcga
     1081 tgcagaccac acgcacatcg tgcggcacag cgatcttttc gatgacctcg cgcgtgcgct
     1141 cgcctctagt gcattgggtg atcacgacca tcggccggag cacttgtcat gagcacgcac
     1201 aacctgacgg gcacatggca atccggtgag gccggtatgg cgacgcggct gcgcacgctg
     1261 gcgttcgaac gccccgacgc gaccgccttg atcacgatcg acgctgcggg cgaaacgcag
     1321 tacgactacg ccgaactcga tcgccgagca gcgtccgtgg ccgcgcactt tgataagcaa
     1381 cgagcggccg gtgaacgcgc gctgattctg atggacagcg gtgttgacta tgtgagtgcg
     1441 ttctttggct gcctttatgc tggagtagtc gcggtcccgg tctatccgcc ggaatcgaaa
     1501 cgcgagcagc atttggcgcg gctacgcggg atcgcgcagg acgcgggcgt gcgttacgtg
     1561 ctgaccacgt cggcgttgca ggagcgcttc gccgaccagt acggcgaact agcgccggac
     1621 gctgagatca tcgcagtgga tacgctgtgc gtggcgagtg catccgccga taccggcgcc
     1681 ttcgcgctgc atgacgtgca accgtccgat attgcgttcc tgcaatacac gtcgggttcc
     1741 acgggaacgc cgaaaggcgt gatggtcagc cacggcaatc tgatcgcgaa cgaaacagcg
     1801 atcaaggcag gcctcggcgt gcagagcgac gacgtattcg tgagctggct gccgctctat
     1861 cacgacatgg gtttgatcgg cagcttgttg cagccggtct tcagcggcat tcctctcgtg
     1921 ctgatgtcac cgcagtattt tcttgaacgc ccgctgcgat ggcttcaggc tatcgcccgg
     1981 tatcgaggca cgatttccgg tgcacctgat ttcgcgtatc gattgtgtgc cgaacgcctg
     2041 cgcgacaacg cgatcacgca actcgacctg tcgagttggc ggctcgcttt ctcgggatct
     2101 gaacccgtgc gacgcgacac gctcgatgcg tttgtcgcgc gcttcgcgtc tgtcggcttc
     2161 gatgccgccg cgctatatcc gtgctatggc ctcgccgaag caacgctctt tgtgacgggc
     2221 ggccggcgcg gcgctgggtt gatatcggcc aggtttgaga gcgacgcttt gtctgccgct
     2281 cgcgtggccg ttacgtcgga gagtgagccg ggcacggtgc tcgtcgcatg cggcgcgccg
     2341 caaccgggcc acgtgattga agtcgttgat ccggtgagcg gggacacgct catcagcggc
     2401 cagattggag aaatccatgt aagcggcccg agcgtggcgc atggctattg gcaacgcgcc
     2461 gacgtcagcg cgtcgacgtt tcggaccgat ggcgcgacgc gatggctgcg caccggcgac
     2521 ctcggtttcg ttcatgacgg gcagctttat atcgccggtc gctgcaagga cttgatcatc
     2581 gtgcgcggca agaacctgta tccgcaggat atcgagcagg ctgttgaggc gcgctgcgag
     2641 ttcgtgcgca aaggtcgggt tatcgcgttt gccgccgata tcgatggcgc cgaaggtccc
     2701 gcgctcgcac tcgaaatcgc gccgatgatg aaaaagcgct tcacggcggc tgacatcgtg
     2761 gcgcagttga accgttgcgt gttcgatgcg tgcggtgaga ttcccatcgc cgtgatgctg
     2821 ctcaatcctg cggcgttgcc gaagacatcg agtggtaagt tgcagcgcgc ggctacgcgg
     2881 caaggctggc aggaccgcac actcgataac tatgcgattt gggaacatgg tcactttgta
     2941 atgggcgcag cggagcccga ggccgataag ctgcaagctc cgctcgacgg tttcgaaaag
     3001 gaactcgcgg cactatggag cgaggtgctc gaaagcgaga tcgttaaaca cgatgcgcat
     3061 tttttcgcgt ccggcggcag ctcgctgacg gcggcgcgct tagcggcgcg catcggcgaa
     3121 cgttggcgac ggccgttcga gatcggacag gtcttcgaat t
//
LOCUS       DATGBK010000440         2664 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_28696, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000440 DATGBK010000000
VERSION     DATGBK010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2664
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28696"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1337
                     /locus_tag="VKJ77_06370"
     CDS             <1..1337
                     /locus_tag="VKJ77_06370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44930.1"
                     /translation="ADAGLRHYARKTALLDGLSSTWRDANHGGLLFLGLTCVVILMLA
                     IIDGLCIQFLNLSTYQRFYSTRLTRAFIGATNRVRLDQANRRDVTSLVPGDSIAMGQY
                     YHGQSCAPVHLINTTINKTIDWNSSLVQRGSRGMIMSIGPAGMTVGAKLGVLKCEWNR
                     ANDISTPATHILSGHPTPNIWLESLTLGDWIAISGAAVSTGLGQMTRPGYSLLLGIAN
                     IRLGYWWDTYSAPFRHGTKSSPRTRVPLPDDKDPKRIFREKVFGTQFCLTSELLGQFD
                     GPRGRRWYLTDGGHFENTGAYELLRRQLAFIVIFDNGCDPSYAFDDLANLMRRVRVDF
                     GIEIFESSCKITSPDGLRLNPSLIAKSFDAFAKGPDYLAIRLMVAFPDGRTGQILSIK
                     PRLSAAAPHDVRQYKNTSPDFPHETTADQFFDDVQWESHRALGYSQARALFG"
     gene            complement(1413..2624)
                     /locus_tag="VKJ77_06375"
     CDS             complement(1413..2624)
                     /locus_tag="VKJ77_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018007380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC44931.1"
                     /translation="MDVVQTERASEIARRVEEFVRTVVVPYERDPRCGSHGPSEELVR
                     ELRGKARAAGVLTPHILAGGGHLTQLETATVLKQSGLSPLGPVAVNTAAPDEGNMYLI
                     GKIGTAAQKARFLAPLVAGDARSAFFMTEPASDGGAGSDPSMLQTMARRDGDHWVIDG
                     TKAFITGAEGASVGIVMARSNTGEDGDQKDSRVRATMFLVDLPHPAIHLERILDTIDS
                     SMPGGHAVVRISALRVPDSQVLGEAHEGFKYAQIRLSPARLSHCMRWHGATTRAHEIA
                     THYACTRRAFGKLLIDHEGVGFMLAENVIDLQQAELMIDWCAAVLDSGSLGTSESSMT
                     KVAVADALFRVADRCVQVMGGTGVSRDTVVEQVFREIRAFRIYDGPTEVHKWSIAKKI
                     KRDTLSGLNRT"
BASE COUNT          494 a          866 c          767 g          537 t
ORIGIN      
        1 ccgctgacgc cgggctaaga cactatgcgc gcaaaaccgc cctcctcgat ggcctgtcga
       61 gcacttggcg ggatgccaat cacggcggcc tgctgttcct tggacttacc tgcgtcgtca
      121 tactgatgct cgccattatc gatggccttt gcatccagtt cctcaatctc tcgacctacc
      181 agcgcttcta tagcacgcgc ttgacgcgcg cgtttattgg cgcaacaaac cgcgtccggc
      241 tcgatcaggc gaaccgccgc gacgtcactt cactcgtccc cggcgacagc attgcaatgg
      301 gccagtacta ccacggccag agttgcgcgc cggtgcacct gatcaacacg acgatcaaca
      361 agaccatcga ctggaattcc tcgctggtgc agcgcggttc gcgcggcatg atcatgagca
      421 tcgggccagc cggcatgacc gtgggcgcga aactgggcgt gctgaaatgc gaatggaatc
      481 gcgcgaatga catctccacg cccgctacgc atatcttgtc cggccacccg acgccgaaca
      541 tctggctcga gtcactgacg ctgggcgact ggatcgcgat ctcgggcgcg gcggtgagca
      601 ccggacttgg acaaatgacg cgtccgggtt attcgctgct gctgggcatt gccaatattc
      661 gccttggtta ttggtgggac acgtactccg cgccatttcg ccacggcacg aaaagcagcc
      721 cgcgcacacg tgtacctctt ccagacgaca aggatccgaa gcgcattttt cgtgagaagg
      781 tgttcggcac gcagttctgc ctgaccagcg aactgctcgg gcaattcgac gggccgcgag
      841 gccggcgctg gtatctgacg gacggcggcc acttcgagaa caccggcgcg tacgaattgc
      901 tgcgtcgcca gttggcgttc attgtcatct tcgacaatgg ttgcgatcct tcctacgcgt
      961 tcgacgacct ggccaacctg atgcgacgtg ttcgcgtcga cttcggcatc gaaattttcg
     1021 agtcatcgtg caaaatcact tcgcccgacg gcctgcggct gaacccaagc ctgattgcca
     1081 aatcgtttga tgcttttgca aaaggtcccg actatctcgc gattcgcctg atggttgcgt
     1141 ttccggacgg acgcaccggt cagatcctct cgatcaaacc ccgcctgagc gcggcggcac
     1201 ctcacgatgt acgtcaatac aagaacacca gtcccgactt cccgcatgaa acgactgctg
     1261 accagttctt cgacgatgtc cagtgggaat cgcatcgcgc gctcgggtat tcgcaagcgc
     1321 gcgcgttgtt cggctgaact ggcgcgagca tggacgtcac cttggcgggc gccagacgca
     1381 tcgagtgcga ttttcagcgc ctgctaaccg ccttaagttc tgttaagccc tgacagcgtg
     1441 tcgcgtttga tcttcttggc gatcgaccac ttgtgtactt ccgtgggacc gtcgtagata
     1501 cgaaacgcgc gaatctcacg gaacacttgc tcgaccaccg tatcgcgcga taccccggtg
     1561 ccgcccatga cctgcacaca gcggtcggcc acacggaaca acgcgtcggc cacggcgacc
     1621 tttgtcattg aactttcaga tgtgcctagc gaaccgctat cgagtacggc cgcacaccag
     1681 tcgatcatca gttccgcctg ctgcaaatcg atcacgtttt ccgcaagcat gaaccccacg
     1741 ccttcgtgat cgatcagcag cttgccgaat gcccggcgcg tgcaagcgta gtgcgtcgcg
     1801 atctcatgcg cgcgcgtggt cgcgccatgc cagcgcatgc aatgcgacag ccgcgcgggc
     1861 gacaacctga tctgcgcgta tttgaagcct tcgtgcgctt ctcccagtac ctggctgtcc
     1921 ggcacgcgca aagcgctgat acgcacaaca gcgtgaccgc cgggcattga actgtcgatc
     1981 gtgtcgagaa ttcgctcaag gtgaatggcg ggatgcggca ggtcaacgag gaacatggtc
     2041 gcccggaccc tgctgtcctt ctggtctccg tcttcgcccg tgttgctgcg cgccatcacg
     2101 atgccgaccg acgcgccttc agcgccggtg ataaaggcct tcgtgccgtc gataacccag
     2161 tggtcgccat cgcgtctggc catggtctga agcatggagg gatcggagcc cgcgccgcca
     2221 tcggatgcgg gttcggtcat gaagaatgcc gagcgggcat cgcccgctac gagcggcgcg
     2281 agaaaccgcg ccttctgcgc cgcggtaccg atcttgccga tcaggtacat gttgccttcg
     2341 tccggcgcgg cggtattcac ggcgaccggg ccaagcggcg acaagcccga ctgcttcagg
     2401 acggttgcgg tttcgagttg cgtgagatgg ccgcctccgg ccaggatatg cggcgtaaga
     2461 acgcccgccg cgcgcgcctt gccgcgcagt tcgcgcacca gttcctcgct cgggccgtga
     2521 ctgccgcaac gcggatcgcg ttcgtatggg accaccaccg tgcgcacgaa ctcttccaca
     2581 cgcctggcga tttcgctcgc acgctctgtc tgtacaacat ccatgctgct catgcagggt
     2641 ctccttttta gcgccacgca acgc
//
LOCUS       DATGBK010000441         2628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_51742, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000441 DATGBK010000000
VERSION     DATGBK010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51742"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..619)
                     /locus_tag="VKJ77_06380"
     CDS             complement(<1..619)
                     /locus_tag="VKJ77_06380"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC44932.1"
                     /translation="MKLDSYWLDTAPVFSEGAQGPVEGRADVVVIGGGFTGLSAALEL
                     ATRGVSVTVLEAGRIASEASGRNGGQCNTGVAQDFASLAARVGLEQARGFYRAYESAV
                     ASVESIVSRHQIDCDFVRTGKLKLAAKPKHFEKLARTYEVLRREVDPEVELIPADRMR
                     SEIGSDGFHGGLLQRNGVQMHMGKFGVGLAQAATRHGARIFEGAAV"
     gene            complement(700..2232)
                     /locus_tag="VKJ77_06385"
     CDS             complement(700..2232)
                     /locus_tag="VKJ77_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC44933.1"
                     /translation="MMRVLAGTGMMAVTGGGLLSVSASALAADTPKKGGSIRVAYDAG
                     SVSDTLGPAVGSTGSDYIRFFMFYSGLTQFDESLTPQMNIAESVSTSDAKTWIIKLRQ
                     GVTFHDGKPLAPADVVYSLLRHKNPQTASKVKTLADQFTDIKASGPNEVTMVLDVPNA
                     DLPAILATPQLVIVKDGTTNFSTAIGTGPYKVKSFKPGVSTVGVRNDNYWKAGQPYLD
                     QIELVSISDSAARINALLAGDVHLINSVDPRSTQRIASTPGYAVKETKSGLYTDLIMR
                     RDNTLTGNPNFVLGMKNLFDREQIRTAVFRGYAVTGNDQPIPPGHRYFNASLPQRKFD
                     LDKAKFYMQKAGAVGPALPPIYATTDANGSIEMAELMQQTAAKIGVNLVVNRVPADGY
                     WSNHWMKHPLGFGSINPRPSADVLFTQFFKSDAPWNESGWKDPRFDQLLLSARAETDE
                     AKRKQMYGEMQVLVADQGGIGIPSFISLLDANDKRLKGLGSIPTGAMMGFSFAEHVWW
                     TA"
BASE COUNT          503 a          824 c          756 g          545 t
ORIGIN      
        1 tcaccgccgc cccttcgaag atacgcgcgc cgtgccgtgt ggcagcctgt gccaggccga
       61 ccccgaactt gcccatgtgc atctgcacgc cgttgcgctg caatagtccg ccatgaaaac
      121 catccgagcc gatttcactg cgcatgcgat cagccggaat caactcgact tccgggtcga
      181 cctcgcggcg caacacctca taggtacgcg ccagtttttc gaagtgcttg ggcttggccg
      241 ccagcttgag tttccccgtg cggacaaagt cgcaatcaat ctgatgacgg gagacgatcg
      301 actccacgct tgccaccgca ctttcgtacg cgcgataaaa gccccgggcc tgttcaagcc
      361 cgactctcgc ggcgagcgaa gcgaagtcct gcgcgacgcc ggtgttgcac tggccgccgt
      421 tacgcccgga cgcctcgctc gctatgcgcc ctgcttcgag cacggtgacc gatacaccac
      481 gcgtggccag ttcgagcgca gccgacaagc ccgtgaaccc gccaccgatg accaccacat
      541 cggcgcggcc ttccacggga ccctgtgcac cttcgctgaa tacgggtgcc gtatccagcc
      601 aatacgaatc aagcttcatt gatttcttag ttgaatgtgg cgcaatgagt gtgcttcttc
      661 ctcacgcgcc accatagccg cttcagtaac gcgcttgggt caggccgtcc accaaacatg
      721 ttcggcgaac gagaagccca tcatcgcacc ggtcgggatc gaacccagcc ctttcaaccg
      781 cttgtcattg gcgtccagca ggctgatgaa cgacggaatt ccgatgccac cctgatccgc
      841 caccagcacc tgcatttcgc cgtacatctg cttgcgcttg gcttcgtcgg tttcagcacg
      901 cgcgctcagc agcaactggt cgaaacgagg atccttccag cctgactcat tccagggcgc
      961 gtcggacttg aagaactgcg tgaacaagac gtctgcgcta ggacgcgggt taatgctgcc
     1021 aaaaccgagc ggatgtttca tccagtgatt cgaccaatag ccgtcggcgg gaacccggtt
     1081 cacgaccaga ttcacaccaa tcttcgctgc cgtctgctgc atcagctccg ccatttcgat
     1141 agagccgttc gcgtcggtcg tggcgtagat cggcggcagt gccgggccga ctgcaccggc
     1201 cttctgcatg tagaacttgg ccttgtcgag atcgaacttg cgttgcggca atgaagcgtt
     1261 gaagtagcgg tggcccggcg ggatcggctg gtcgttgccg gtgacggcgt agccccggaa
     1321 cacggccgtg cggatctgct cccggtcgaa caggttcttc atgcccaaca cgaagttggg
     1381 gttacccgtg agcgtgttgt cgcgacgcat gatcaggtcg gtgtaaagac cggatttggt
     1441 ttccttgacc gcgtagccag gggtcgaggc aatgcgctgt gtcgaacgcg gatcgacgga
     1501 gttgatcagg tgcacgtcgc ctgcgagcag cgcattgata cgggccgcgc tgtcgctgat
     1561 gctcaccagt tcgatctgat cgaggtacgg ttgtcctgct ttccagtagt tgtcattgcg
     1621 cacgcctacc gtgctgacac ccggcttgaa actcttgacc ttatagggtc cggtaccaat
     1681 cgccgtgctg aagttcgtcg tgccgtcctt gacgatcacg agttgcggcg tggcaaggat
     1741 cgccggtaag tcggcgttcg gcacatcaag caccatggtc acttcgttcg gaccactcgc
     1801 cttgatatcg gtgaactgat cggcgagggt cttcaccttt gacgccgtct gcggattctt
     1861 gtgtcgcagc agtgaataga ccacatcggc cggcgcgagc ggcttgccgt cgtggaaagt
     1921 cacgccctgg cgcagcttga tgatccacgt ttttgcatcg gaggttgata cggactccgc
     1981 aatgttcatc tgcggcgtca ggctttcgtc aaactgggtc aggccgctat agaacatgaa
     2041 gaaacggatg tagtcactac ccgtcgaacc cacggcgggg cccagggtgt ccgaaaccga
     2101 acccgcgtcg tacgccaccc ggatactgcc gcctttcttg ggggtatcgg cggccagcgc
     2161 agacgccgat accgacagca ggccgccgcc agtaaccgcc atcatgccgg tgccggccaa
     2221 cacgcgcatc atgtcgcgac ggcttacgcc accgcttttt gtatcatctt tcacttgagt
     2281 aactccggac gggtaaggga tctgaaagta cgttcaggag gcgccggggg ctaggtttat
     2341 cgcgtctctt cagcagcatc gtatgcttgc agaatcagct tgaaacgccg acaaaaaccg
     2401 cgaaacagca taaatcgctt gttattgcat cgctaacgcg gcgctttgca tggccgtcaa
     2461 ccagccgatg aaaacgtccg cgttttcccc gatgtttcag gccacggcgg cctgctccac
     2521 gtcgagcaat tgggggtatc gccgcagcac ctcggcatag agttcgtcaa taattccggc
     2581 gccggccgtc agcgtgcccg ccgcttcccg cgcgtcgagc gcatcgaa
//
LOCUS       DATGBK010000442         1511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_329286, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000442 DATGBK010000000
VERSION     DATGBK010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329286"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..945)
                     /locus_tag="VKJ77_06390"
     CDS             complement(<1..945)
                     /locus_tag="VKJ77_06390"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HMC44934.1"
                     /translation="MSDVRKEYDSMGEVDVPADKLWGAQTQRSLEHFSIGKDLIPHEM
                     IASYATLKKAAAHANHVGKRLDDATHALIQQVCDEILSGKHQDMFPLHVWMTGSGTQF
                     NMNVNEVISNRCCQLAGTQLGSKAPVHPNDHVNMSQSSNDTFPSAMYIAAAVNVSGRL
                     RPAIQALHDAIAAKASQWSDIVKIGRTHMQDATPITLGQEWSGYAGMLADNLERLDDA
                     LKGVFRLALGGTAVGTGINAAPGFAEAGAAEIARLTSLPFVSAPNKFAVQGAHDALVQ
                     LSGTLRTLAASLYKIGNDIRLMSCGPRAGFAELIIPENE"
     gene            complement(1002..>1511)
                     /locus_tag="VKJ77_06395"
     CDS             complement(1002..>1511)
                     /locus_tag="VKJ77_06395"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HMC44935.1"
                     /translation="GRYSMLSARVVPPVRADTEFADMRAAYDALDEVTRASIEGLRVY
                     HSIVYSRHVLGFDFNEDEQNKLKGAVHPLVRTIPGSGRRALYLASHAAHVVDWPVPEG
                     RLLLRDLIDHATQPQFIYRHVWRPHDFVIWDNRCTMHRARPFDDKTHRRELRRTTSLD
                     LPLPASARA"
BASE COUNT          279 a          459 c          482 g          291 t
ORIGIN      
        1 ctcgttctcg gggatgatca attcggcgaa acctgcgcgc ggcccgcagg acatcagcct
       61 gatgtcattt ccgatcttgt acagggaggc cgcaagcgtg cggagcgtcc cggagagctg
      121 gaccaaggca tcgtgcgcgc cttgcacggc gaatttattc ggggcgctca cgaacggcag
      181 gctcgtgagc ctcgcaatct ccgcagcgcc ggcttcggca aagcccggag ccgcgttgat
      241 gccggtgccg accgccgtcc caccaagcgc gagccgaaag acgcccttca acgcatcgtc
      301 gaggcgctca agattgtcgg ccagcatgcc ggcgtagccg gaccactcct gtcccaatgt
      361 gatcggcgtc gcatcctgca tgtgcgtccg gcctatcttc acgatgtcgg accactgcga
      421 cgccttggcg gcgatggcgt catgcaacgc ctggatagcg gggcgcaacc gcccgctgac
      481 gttgacggcg gctgcgatgt acatcgccga cggaaaggtg tcgttcgacg attgggacat
      541 gttgacgtgg tcgttcggat gaaccggtgc cttcgaaccg agttgcgtac cagccagctg
      601 acagcagcga ttcgagatga cttcgttcac gttcatgttg aattgcgttc cgctacccgt
      661 catccataca tgcagcggaa acatgtcttg atgcttgccg gacaggattt cgtcgcagac
      721 ttgctggatc aaggcgtgcg tcgcatcgtc cagccgcttg ccgacgtggt tggcgtgggc
      781 cgccgctttc ttgagcgtcg cgtaagacgc gatcatttcg tgcgggatga gatcttttcc
      841 aatactgaaa tgctcgagcg aacgctgtgt ttgagcaccc cataacttgt cggcgggcac
      901 gtcgacttcg cccatgctgt catattcttt gcggacgtcc gacatgctcg cgcaccccca
      961 actttaatat cgcccaagca gcttggatga atgctccgcg ctcaagcccg agccgaagcc
     1021 ggcaacggga ggtcgagcga cgtcgtgcgc cggagctcgc ggcggtgggt cttgtcatcg
     1081 aacggccggg cacgatgcat ggtgcagcgg ttgtcccaga tcacgaaatc atgcggccgc
     1141 cagacgtggc gatagatgaa ttgcggctgg gtggcatggt cgatcaggtc gcgcagtagt
     1201 agccggccct ccggcaccgg ccagtccacg acatgggcgg cgtgcgaggc gagatagagt
     1261 gcgcggcggc ccgagcccgg gatggtgcgc accaatggat ggacggcgcc cttcagcttg
     1321 ttctgctcgt cctcgttgaa gtcgaagccg agcacgtggc gcgaatagac gatggaatga
     1381 taaacgcgca acccctcaat ggaggcgcga gttacctcgt cgagtgcatc gtaggcggcg
     1441 cgcatatcgg cgaattctgt atcggcccgc accggtggca ccacccgcgc cgacaacatc
     1501 gagtagcggc c
//
LOCUS       DATGBK010000443         2400 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_236778, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000443 DATGBK010000000
VERSION     DATGBK010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236778"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1543)
                     /locus_tag="VKJ77_06400"
     CDS             complement(<1..1543)
                     /locus_tag="VKJ77_06400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease H3TH domain-containing
                     protein"
                     /protein_id="HMC44936.1"
                     /translation="MPEELNLEGKTLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYG
                     MINMLRRLRKDINAEYSACVFDAKGKTFRDDWYPDYKANRASMPEDLSKQIEPIHVIV
                     RALGWPLVMIEGVEADDVIGTLAVAAEKRGMKVVVSTGDKDLAQLVTDHVTLINTMSN
                     ETLDRAGVLNKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTALKWLAQYETLDGIV
                     AHAQEIKGAVGDNLRKALTFLPMAKQLVTVQTECDLTEQIVSIEETLPARPEARDELR
                     DLFTRHGFKTWLREVEIADAVEGPTDTPPAPATEMERHYDTVQTWEQFDQWLARINAA
                     ELTSFDTETTALDPMLAQLVGLSVSVEPGHAAYIPVAHRGPDAPLQLPRDEVLQKLKL
                     WLEDPSKKKVGQHLKYDEQVLANYGIELNGVEHDTLLQSYVLESHRPHDMDNLALRHL
                     GAKTIKYEEVAGKGASQIGFDEVALDQAAPYAAEDADITLRLHQVLYPQLADEAQLLK
                     VYRDIE"
     gene            1545..2294
                     /locus_tag="VKJ77_06405"
     CDS             1545..2294
                     /locus_tag="VKJ77_06405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011881579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HMC44937.1"
                     /translation="MNKRKVIPSLRSLADQERATAKKARASWQMFTIMAEFIEATEYL
                     SEIRPAISIYGSARLKPESPYYKLTMEIAQKFSDAGFAVISGGGPGIMEAANKGAHAG
                     KSPSVGLNIELPHEQSGNQWQDISLRFRHFFTRKVTFVKNSDAVVVMPGGFGTLDEMA
                     EVLTLIQTKKSRHVPIVLVGAEFWEGLLSWFRNTLIPTGVISAKDLDLMQVIDDPDQV
                     LEAVLQFYEDRETAEEQPAEGKSDEDRMFYL"
BASE COUNT          462 a          722 c          701 g          515 t
ORIGIN      
        1 tttctatatc gcggtacacc ttcagcaatt gcgcttcatc ggcgagctgc ggataaagca
       61 cctgatgcag ccgcaacgtg atgtccgcgt cttccgctgc gtagggcgcg gcctggtcca
      121 gcgccacttc gtcaaagccg atctgcgacg cgcccttgcc cgccacctct tcatatttga
      181 tggtcttcgc gcccagatgc cgaagcgcga gattatccat gtcgtgcggc cggtgcgatt
      241 ctaaaacata cgattgcaac aacgtgtcgt gttcgacacc attcaactcg atgccatagt
      301 tcgccagcac ttgctcgtcg tatttcagat gctggccgac cttcttcttc gacggatctt
      361 ccagccacag tttgagcttt tgcaggactt cgtcgcgcgg caactgcagc ggcgcgtccg
      421 gcccgcgatg cgcgaccgga atatatgccg catgccccgg ctcgaccgac acggataacc
      481 cgaccagttg cgcgagcatt ggatcgagcg cagtcgtttc ggtatcgaag gaagtcagct
      541 cggcggcgtt gatgcgcgcg agccattggt cgaattgctc ccacgtctgc acggtgtcgt
      601 aatgccgctc catttcggtg gccggcgcgg gcggcgtgtc cgtgggacct tccaccgcat
      661 ccgcaatctc cacttcccgc agccaggtct tgaaaccgtg gcgcgtgaac aggtcacgca
      721 attcgtcgcg agcctcgggc cgcgccggaa gcgtttcctc gatcgacacg atctgctccg
      781 tcaggtcgca ctccgtctgt acggtaacga gctgtttcgc catggggagg aaggtgagag
      841 ccttgcgcag attgtctccc accgcacctt tgatttcttg cgcatgtgcc acgatgccat
      901 ctagggtttc gtattgcgcg agccatttca acgccgtctt cggcccgcat ttttcgacgc
      961 ccggtacgtt atcgaccgta tcgccgatga gcgagagata gtcgacgatc cgctccggcg
     1021 gcacgccgaa cttattcagc accccggcgc gatcgagcgt ctcgttggac atcgtattga
     1081 tgagggtgac atgatccgtc acaagctgcg ccagatcctt gtccccggtc gacacgacga
     1141 ctttcatgcc gcgcttttcg gcggcaaccg caagcgtgcc aatgacgtcg tcggcctcca
     1201 cgccttcgat catcacaagc ggccagccga gcgctcgcac gatcacgtgg atgggctcta
     1261 tctgtttcga gaggtcctcg ggcatcgacg cccggtttgc cttgtaatct ggataccagt
     1321 cgtcacgaaa tgtcttgcct ttggcgtcga atacgcacgc gctatactct gcgttgatgt
     1381 cctttcgcaa ccgccgcagc atgttgatca ttccgtacag cgcgccggtt ggaccgccgt
     1441 cagggccgcg taaatccggc atggcgtggt aggcccgata gagatagctg gatccgtcga
     1501 ccaatagcag ggtcttacct tcaagattaa gttcttcagg cattatgaac aaaagaaaag
     1561 tgattccgag tctgcgatcg ctcgcagatc aagagcgcgc gacggccaag aaggcccgcg
     1621 catcgtggca gatgttcacg attatggcag agtttatcga ggcgaccgag tacctctcgg
     1681 agatccgccc tgccatcagc atctatggtt cggcgcgcct gaaaccggag tcgccgtact
     1741 acaagctcac catggaaatc gcgcagaaat tctctgacgc cggtttcgcc gtcatctccg
     1801 gcggcggtcc cggcatcatg gaggcggcca acaagggcgc ccatgcggga aagtcgccgt
     1861 cggtggggct gaacatcgag ttgccgcacg agcagtcggg caaccagtgg caggatatct
     1921 cgctgcgctt ccggcacttc ttcacgcgca aggtgacgtt cgtgaagaat tcggacgccg
     1981 tggtggtcat gccgggcggc tttggtacgc tggatgaaat ggcggaagtg ctgacgctga
     2041 tccagaccaa gaagtcgcgg cacgtgccca tcgtgctggt cggcgccgag ttctgggaag
     2101 gcttgctctc gtggttccgc aacacgctga tcccgaccgg cgtgatcagc gcgaaggatc
     2161 tcgacctgat gcaggtgatc gacgatccgg accaggtgct ggaagcggtg ctgcagttct
     2221 acgaagaccg cgagacagcc gaagaacaac cggccgaagg caagtcggac gaagaccgga
     2281 tgttctatct ttgatggtct gatagcggat tcgataacct gagcgctcga tgagcggctc
     2341 ctctcggagc cgcttttttg cgttattgga acaccctatt ggaaagcaac ttccgcgaaa
//
LOCUS       DATGBK010000444         4876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_283038, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000444 DATGBK010000000
VERSION     DATGBK010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283038"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..362)
                     /locus_tag="VKJ77_06410"
     CDS             complement(<1..362)
                     /locus_tag="VKJ77_06410"
                     /EC_number="3.5.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051895.1"
                     /note="catalyzes the formation of S-ureidoglycolate and
                     urea from allantoate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allantoicase"
                     /protein_id="HMC44938.1"
                     /translation="MAIPTFDPNAPAFTRAGINLADPRLGAQAVLTSDDFFAPMARML
                     DPEPAVFVPGKYDDNGKWMDGWESRRKRVTGHDFCIVKLGVAGELMGVDIDTSHFTGN
                     FPPAASIDACRSDDDIPPA"
     gene            complement(404..1072)
                     /locus_tag="VKJ77_06415"
     CDS             complement(404..1072)
                     /locus_tag="VKJ77_06415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea carboxylase-associated family protein"
                     /protein_id="HMC44939.1"
                     /translation="MSYTNQPALTVPAGHGKAVRLKAGQAVRVINTHGTQVVDCWAWN
                     AYDLNEYMCMETTRVWNQRLNPVVGDSFVTNQRHPVLTVVEDTTPGVHDTFMAACDRK
                     RYELLGVRGYHRNCCDNMFEGMFELGVTPPRQNLASFNIFMNIRVQPDGITLHTLPTV
                     TKPGEYITLRAEMDCFVAFSACPQDIVKIQGQGDNTPQPVDIAVFDDFASDLQGTQSW
                     VPDA"
     gene            complement(1069..1872)
                     /locus_tag="VKJ77_06420"
     CDS             complement(1069..1872)
                     /locus_tag="VKJ77_06420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC44940.1"
                     /translation="MNPSDSTPPVALKARGIVKSFGANRILDGVDLTVARGETVCVLG
                     PSGSGKSTLLRCLNWLSPPDEGAIWIGDERIGLRENPNSAASPRPDREIRAQRSRIGM
                     VFQSFNLWPHMTALENVMEGLLSVKRMNRLAATDLAIEALRQVGLSGKHTSMPANLSG
                     GQQQRVGIARTLAMAPEVILFDEPTSALDPELVGEVLAVMRGLAANDTTMIIVTHEIG
                     FARDVADRVIFMDGGHIVEQGPPAQVLDTPSSPRLQQFLFRFTPENSRS"
     gene            complement(1878..2552)
                     /locus_tag="VKJ77_06425"
     CDS             complement(1878..2552)
                     /locus_tag="VKJ77_06425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007738114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC44941.1"
                     /translation="MTFDLSVLSGYWPELATGLGSTVWLCAAGATMSGVLGVLLTVGQ
                     RRGGPWLAAMIRGYTALTLGLPLLVLLYVMFFVLPDFGVLLPAPLVGTVTLAIYYGPY
                     VAEVIQAAVAAVPAGTIEAGVTIGMSPVAIARRIIAPQALPLLLPTMTGLLIGLVKDS
                     ALLSVISVHEFMFAAKAVVSDTYAPLEVYFVVAMVYWAVTSVIHFSTRHWERRLGRAH
                     RVALPR"
     gene            complement(2549..3235)
                     /locus_tag="VKJ77_06430"
     CDS             complement(2549..3235)
                     /locus_tag="VKJ77_06430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC44942.1"
                     /translation="MIGFDPQVIHSLPTLIDGWLLTVELTLLGATGSLVFGHLALAMQ
                     LTRVAPLRWAARLYISFMRGTPALVQLFVLFFALPLIGLGGRPMLAAALTLGLNSGAY
                     TAEILRGNLRVITAGQYEAAIALGMAPWRIALRIALPQMLKASLPALINEFTILLKTT
                     PLASVVAVTELTYAGQMVIARTYTSAQVMLLVSVGYLAVALPVIYAARRAQRSPRTPG
                     VERVATGVAR"
     gene            complement(3251..3886)
                     /locus_tag="VKJ77_06435"
     CDS             complement(3251..3886)
                     /locus_tag="VKJ77_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea carboxylase-associated family protein"
                     /protein_id="HMC44943.1"
                     /translation="MLLLKEPPSRAPLPPQTVAVPAGESRAIEVKAGQILRIEAKEPG
                     AVASMFGFSRINDDVYMSVHHTRVFSNSYVLQAGMRIVSNRRRALMVLGKDSSGKHDL
                     LLPASTTAYLAEQGYAAQTGCVESVGAVIRSLGLKPPKMPDPINLFMHVALHQDGRIE
                     PLPNTTRAGDFVACRVVTDMVFIVSACCTGIPGNDAPGALELSVAEELDEI"
     gene            complement(3898..4515)
                     /locus_tag="VKJ77_06440"
     CDS             complement(3898..4515)
                     /locus_tag="VKJ77_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011494412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea carboxylase-associated family protein"
                     /protein_id="HMC44944.1"
                     /translation="MTDPVQTLTVNAGHGRTFEVKAGQRLTIIDVEGQQAADFVAVVA
                     SNHDEKLSPTHTRRQLRTLFFNIGDALYSSLGRPLLRVVEDTVGIHDANVPACDDTRF
                     TVDFNVTGHRNCLDNMHAGLALYGLSPFDVPEPFNLFQNGPVTRDCRMQVTDPTSKPG
                     DYITFDVFEDLVCAVSSCPQDIIPGNGLKVTDIAISILPATPVAA"
     gene            complement(4535..>4876)
                     /locus_tag="VKJ77_06445"
     CDS             complement(4535..>4876)
                     /locus_tag="VKJ77_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC44945.1"
                     /translation="LKAKGLAPIQLISVDSVDQTVAALMTGRADFVFDDMTVLAGVIK
                     QNPGKLKPTGELGPSQWIAWATRPDDTRLNKAISDQIIAMKKSGELARLQKANLGVSF
                     DTPTSDFVPAQ"
BASE COUNT          936 a         1477 c         1563 g          900 t
ORIGIN      
        1 gcgggcggaa tgtcgtcatc cgagcggcac gcgtcgatcg atgccgctgg aggaaagttg
       61 ccggtgaaat ggctcgtgtc aatatcgacg cccatcagtt cgcccgccac gcccagcttg
      121 acgatgcaga aatcgtggcc ggtcacgcgc ttgcgacgcg attcccagcc atccatccat
      181 ttgccgttgt catcgtattt gccagggacg aacacggctg gttccgggtc cagcatgcgg
      241 gccatcggcg caaaaaaatc gtcgctggtg agcaccgctt gcgcgccgag acgtgggtcc
      301 gcgaggttga tgcccgcgcg cgtaaacgcc ggagcgttag ggtcaaaagt gggaattgcc
      361 atgtgcgtga gggcctgtcc gggagtgttg aaatgatgaa cgctcaagcg tccggaaccc
      421 acgattgtgt gccttgcaga tcggatgcga agtcgtcgaa cacggcgatg tcaaccggtt
      481 gcggcgtgtt gtcgccttgc ccctgaatct tgacgatgtc ctgcggacac gcggaaaacg
      541 caacgaagca atccatttcg gcgcgtagcg tgatgtactc gccaggcttt gtaacggtgg
      601 gcaaggtatg cagcgtgatg ccgtccggct gcacgcggat attcatgaag atattgaacg
      661 acgcaaggtt ctggcgcggc ggcgtgacgc cgagttcgaa catgccttcg aacatgttgt
      721 cgcaacagtt gcggtgatag ccgcgcacgc cgagtagttc atagcgcttg cgatcgcagg
      781 cagccatgaa ggtgtcgtgg acgccgggcg tcgtgtcttc cacgacggtc agcaccggat
      841 gacgctggtt ggtcacgaag ctgtcgccaa ccaccggatt gagccgctgg ttccacacgc
      901 gcgtggtttc catgcacatg tattcgttca ggtcgtacgc attccaggcc cagcagtcca
      961 cgacttgcgt gccgtgggtg ttgatgaccc gcacagcctg gcccgctttc agtcggactg
     1021 ccttgccgtg cccggcgggg acggtcagtg caggttgatt cgtatagctc atgatcgtga
     1081 attttccgga gtaaagcgaa agagaaattg ctggagccgt ggcgacgacg gtgtatcgag
     1141 cacttgtgct ggcggcccct gttcgacgat gtgtccgcca tccatgaaga tcacgcgatc
     1201 cgcgacatcg cgcgcaaagc cgatttcatg cgtgacgatg atcatcgtcg tgtcgttcgc
     1261 ggcgagtccg cgcatgacgg ccagcacttc gccaaccagc tcgggatcga gcgcgctggt
     1321 cggttcgtca aacaggatga cttcgggcgc catcgcgagc gtgcgggcaa tgccgacgcg
     1381 ctgctgctga ccgcccgaca agttcgcagg catcgacgtg tgcttgccgc tcaggccaac
     1441 ttggcgcagc gcttcgatgg cgaggtcagt ggcggcaaga cggttcatcc gtttgaccga
     1501 cagcaatcct tccatcacgt tttcgagcgc cgtcatatgc ggccacagat taaaactctg
     1561 aaacaccatg ccgatccggc tgcgctgcgc gcgtatctcg cggtcgggac gcggactcgc
     1621 cgcgctgttc ggattctcgc gcaaaccgat ccgctcgtcg ccgatccaga ttgcaccttc
     1681 gtcgggcggc gaaagccagt tcagacagcg cagcagcgtc gattttccgg agcccgacgg
     1741 accgagcacg cagaccgttt caccgcgcgc gaccgtcaga tcgacgccgt cgagaatgcg
     1801 gttcgcgccg aacgacttga cgatgccgcg cgccttcaac gccacgggcg gcgtgctgtc
     1861 ggatgggttc atgctgatca ccggggcagg gcgacccgat gggcgcggcc gagacggcgc
     1921 tcccaatgac gagtcgaaaa gtggataacg gacgtcacgg cccagtagac catcgcgacg
     1981 acgaaataga cttcgagcgg tgcgtacgtg tcggacacca cggccttcgc ggcgaacatg
     2041 aactcgtgta ccgagatcac cgacagcaac gcggaatcct taacgaggcc gatcagcaga
     2101 cccgtcatcg tgggcagcag cagcggcaag gcttgcgggg cgatgatgcg tcgcgcgatc
     2161 gcaaccggag acataccgat cgtgacgccc gcttcgatgg ttcccgcggg cacggcggcg
     2221 acagcggcct gaatcacttc tgcgacgtag gggccgtaat agatcgcgag ggtgaccgtg
     2281 ccgaccaacg gcgcaggcag cagtacgccg aaatccggta atacgaaaaa catgacgtac
     2341 agcagcacga gcagcggcaa gccgagcgtc aacgcggtgt aaccgcgaat catcgcagcc
     2401 agccacggac cgccgcgtcg ctggccgacc gtcagcagaa cgcccagcac gcccgacatc
     2461 gtggcgccgg ccgcacacaa ccataccgtg ctgccgagcc cagtcgcaag ctccggccag
     2521 tagccggata gaacgctgag atcgaaggtc atcgcgcaac tcccgtcgcg acccgttcga
     2581 cgccgggcgt gcgtggcgaa cgctgtgcgc gtcgcgcggc gtagatgacc ggcaacgcga
     2641 ccgccagata gccgacgctg accagcagca ttacttgcgc cgacgtgtag gttcgcgcga
     2701 tcaccatctg tcccgcgtac gtcagttcgg tgacggcgac gaccgacgcg agcggcgtgg
     2761 ttttcagcag gatcgtgaat tcgttgatga gtgcgggcag gctggccttc agcatctgcg
     2821 gtagcgcgat cctgagcgca atgcgccacg gcgccatacc gagcgcaatc gcggcttcgt
     2881 actggccagc cgtgatcacc cgcagattgc cccgcaggat ttccgccgtg taggcgccgc
     2941 tattcaggcc gagcgtgagc gcagcggcta gcatcggacg gccgcccagc ccgatcagcg
     3001 gcaacgcgaa gaacagcacg aacagttgca cgagggcggg cgtgccgcgc atgaagctga
     3061 tgtagagtcg cgcggcccag cgcaacggcg cgacccgcgt caattgcatc gcgagcgcga
     3121 gatggccgaa cacgagactg ccggttgcac cgagcagcgt cagttccacg gtcagtaacc
     3181 agccgtcgat gagtgtcggc agactatgga tcacttgtgg gtcaaagccg atcacggttg
     3241 cttctcggaa tcatatttca tcgagttctt cggccaccga cagttcgagc gcgccgggcg
     3301 cgtcgttgcc gggaataccg gtgcagcaag ccgacacgat gaacaccatg tccgtcacca
     3361 cccggcacgc gacgaaatcg ccggcacgcg tggtgttggg cagcggttcg atgcggccat
     3421 cctgatgcaa cgcaacgtgc atgaacaggt tgatcgggtc gggcattttc ggcggcttca
     3481 ggccgagtga tctgatcacc gcgccgaccg attcgacgca gccggtctgt gccgcgtagc
     3541 cctgttccgc aagatacgcg gtcgttgatg ccgggagcag cagatcgtgt ttgccgctgg
     3601 aatccttacc gagcaccatc agcgcgcggc ggcggttgct gacgatccgc atacccgcct
     3661 gcaacacgta cgaattgctg aacacgcgtg tgtgatggac cgacatgtac acgtcgtcgt
     3721 tgatccggct gaagccgaac atcgatgcga ccgcgcccgg ttctttcgcc tcgatgcgca
     3781 ggatctgacc tgccttgacc tcgatcgcgc gcgattcgcc cgcaggcacg gcgacggttt
     3841 gcgggggcag cggggcgcgc gaaggcggtt ctttaagaag cagcatgttg agtccgttca
     3901 ggcggcgaca ggcgtcgcgg gcaggatgga aatggcgatg tcggtgacct tcaggccgtt
     3961 gccgggaatg atgtcctgcg gacacgacga caccgcgcac accaggtctt cgaacacatc
     4021 gaacgtgatg tagtcgccag gcttgctggt cggatcggtg acctgcatcc ggcaatcgcg
     4081 cgtgaccggg ccattctgaa acaggttgaa cggttcgggc acatcgaacg gcgacagtcc
     4141 gtacagcgcg agacccgcgt gcatgttgtc gaggcagttg cggtgcccgg tcacgttgaa
     4201 atcgactgtg aaacgcgtgt cgtcgcaggc gggcacgttg gcatcgtgaa tgccgacggt
     4261 gtcttcgacc acccgcaaca acggacgccc cagcgacgag tacagcgcgt cgccgatgtt
     4321 gaaaaacagc gtccggagct gacggcgtgt atgcgtcggc gacagctttt cgtcgtggtt
     4381 cgacgcgacc actgcgacga agtcggcggc ctgctggccc tcgacgtcga tgatcgtcaa
     4441 ccgttggccc gccttcactt cgaaggtacg tccgtgtcct gcgttgacgg tgagagtctg
     4501 tactggatct gtcatgtgat tcggtctgct cgatttactg cgcggggacg aagtcggacg
     4561 tcggcgtatc gaagctcacg ccgaggttgg ccttttgcag gcgcgcgagt tcgccggact
     4621 ttttcatcgc gatgatctgg tcgctgatcg ccttgttcag acgcgtatcg tcaggacggg
     4681 ttgcccatgc aatccattgc gacggtccga gttcgccggt cggcttcagc ttgcccggat
     4741 tctgtttgat gacgcctgcg agcacggtca tatcgtcgaa tacgaaatcg gcacgacccg
     4801 tcatcaatgc agccaccgtt tgatcgacgc tatccacgct gatcagttgg atcggcgcaa
     4861 gacccttggc cttcag
//
LOCUS       DATGBK010000445         1792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213687, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000445 DATGBK010000000
VERSION     DATGBK010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213687"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..995)
                     /locus_tag="VKJ77_06450"
     CDS             complement(<1..995)
                     /locus_tag="VKJ77_06450"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HMC44946.1"
                     /translation="MQVTLHRSQLHYRDGLTLHTASSGSVGALDALYLQIKQDVHSGL
                     GEVRINIKYLNGLEPHEVISEAIDVLPTVDWKREPERLIHSFSDWAASFSAPLRMLVD
                     CALHDLCAKRAGVSVARWLGAEPANRAAWPTNQTLFWSDDQTLLARADSYVARGFMDL
                     KLRVGIGAFTDDLRRIDLLRTCFGPGLKIDVDANGQWPVKMAREYLHALAKRAVVYVE
                     QPVAAGDWDAIARLAQDSPLPLMLDESVQSDADVERICALGGARLAAHLKLVKLGGIA
                     ATVAAARQLAVAGVPFMIGQMNEGGAATAAALHVACATRPGWAELYGADGLHDDPV"
     gene            complement(1000..>1792)
                     /locus_tag="VKJ77_06455"
     CDS             complement(1000..>1792)
                     /locus_tag="VKJ77_06455"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HMC44947.1"
                     /translation="NRSSWSGTLLGVFVADEEIASEGAKIYASTKPVVDYVVVGEPTS
                     NATFSAHKGSLRPLVRVHGVTAHSGTPHLGENAIYRAAQLLGLIESHHENSVRCRCHP
                     LVGSASLTVTRINGGHADNVLPGACDLLLDRRMVPGEDEADVKREFDQLLDLAQQRFG
                     VRAEILEYKPTTGGATETALDAPIVQASLAACRTHGTTEPGPFGFQGGCDLVHFRSVG
                     AAGVVIGPGTLAVAHKPDEFVPIEEFLLSSLIYRDVALTMMQAGR"
BASE COUNT          337 a          570 c          551 g          334 t
ORIGIN      
        1 accggatcgt cgtgcaggcc gtcagcgcca tatagctcgg cccaaccggg gcgggttgcg
       61 caggcgacat gcagtgccgc tgccgtcgca gcaccgcctt cgttcatttg cccgatcatg
      121 aagggaacac cggcaacggc aagctgccgc gctgcggcaa cggtcgcggc aattccacct
      181 agcttcacta gcttgaggtg cgcggcgagc cttgcgccgc caagcgcgca gatgcgttca
      241 acgtccgcgt cggactgcac gctctcgtcg agcatgagcg gcagcgggct gtcttgtgcc
      301 aggcgcgcga tcgcatccca gtcgcctgcg gcaacgggtt gttcgacata aactacagcg
      361 cgcttcgcca gtgcgtgcag atactccctc gccattttca ctggccattg accgttggca
      421 tcgacgtcga tcttcaggcc cgggccgaag cacgtacgca agaggtcgat gcggcgcaga
      481 tcgtcggtga aggcgcctat gcctacccgc agcttcaggt ccatgaagcc ccgtgcgaca
      541 tatgaatccg cgcgcgcaag caaggtttgg tcatctgacc agaagagcgt ctggttcgtg
      601 ggccatgcag cgcgattggc cggttcagca ccgagccatc gggcgacgct cacgcccgcg
      661 cgcttcgcgc acagatcgtg taaagcgcag tcgaccagca tgcgaagcgg cgcggagaac
      721 gacgctgccc aatcggagaa gctatggatg agccgttctg gctcgcgttt ccaatcgacc
      781 gtgggcagca catcaattgc ctcgctgatg acctcgtgcg gctccagacc attcagatat
      841 ttgatgttga tccggacctc gcccagaccg ctatgaacgt cctgcttgat ctgaagatag
      901 agcgcatcga gagcgcccac gctccctgat gaagcggtat gaagcgttag cccgtcacgg
      961 taatgaagct ggctgcgatg aagagtgact tgcacgatct tagcggccgg cctgcatcat
     1021 cgtcagcgcg acgtcgcggt agataaggct cgataacagg aattcctcga tcggcacgaa
     1081 ctcgtcgggc ttgtgcgcaa ccgcgagcgt gcctggcccg atcacgacac cggccgcgcc
     1141 gacactgcga aagtgcacga ggtcacaacc gccctggaag ccgaacggtc ccggttccgt
     1201 cgtgccgtga gttcggcacg cggcaaggct cgcctgcacg atcggtgcgt caagtgcagt
     1261 ctcggttgcg ccgcccgtgg tcggtttata ttcaaggatt tccgcccgca cgccgaagcg
     1321 ttgctgagcg aggtcgagca actggtcgaa ttcgcgcttg acgtccgcct cgtcttcgcc
     1381 cgggaccata cgccggtcca gcaacaggtc gcaggcgccc ggcaacacgt tgtccgcatg
     1441 tccgccgttg atccgcgtaa cggtcaggct cgcggagccg acgagcggat ggcagcgaca
     1501 acgcacactg ttctcgtgat ggctttcgat taggccaaga agttgcgcgg cgcgatagat
     1561 cgcgttctcg ccaagatgag gcgtgcctga atgcgcggtg acgccatgca cgcgcacgag
     1621 tggccgcaag ctgcccttgt gcgctgagaa ggtagcgttc gaggtcggtt cgccgaccac
     1681 cacatagtcc actaccggtt tcgtcgatgc ataaattttc gcgccttcgc tcgcgatctc
     1741 ttcatccgcg acgaacacgc cgagcagcgt tcccgaccag cttgaacggt tc
//
LOCUS       DATGBK010000446         2486 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_144130, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000446 DATGBK010000000
VERSION     DATGBK010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144130"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..195
                     /locus_tag="VKJ77_06460"
     CDS             <1..195
                     /locus_tag="VKJ77_06460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44948.1"
                     /translation="DSRKWFDRPLQLALARPFICPLRKEDIASKGRLQTSRWRARRQR
                     CYENARIDRLILHSHHESAF"
     gene            455..1726
                     /locus_tag="VKJ77_06465"
     CDS             455..1726
                     /locus_tag="VKJ77_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC44949.1"
                     /translation="MRMKFGFAVTIAAAVAMATACSKKSDNEPAAGASAVPEASASVG
                     ASAAAVPASAASVAAASAPVPASNATVVRIGHVAPLSGPLAHLGQDNENGARLAIEEI
                     SAQGLTIDGHAIHLELDTQDDAADPKKGIAAAQQLVADHVVAVVGHLNSGVSIPASKI
                     YSDADVAQISGATTNPAFTQQGYKTTFRVVPTDARQGPVLATYALKTLHARKIVVVDD
                     ATLYGRGLANEFAKAVVAGGGRITGHEVTSDKARDFKTILNKIKRVQPDAVMFGGMDV
                     TGGPFAKQAAAMGIKARILGGDGMCSADMATLAANAAPNVVCSELGVDVSKLDKGGDF
                     AQRYEARFHLPVQSYAPFTYDAVYVIVDAMKRANSVEAPKVLAAIASTDFNGLTGHIA
                     FDDKGDLKGGGAITLINFKDNKKSVIDVITP"
     gene            1912..>2486
                     /locus_tag="VKJ77_06470"
     CDS             1912..>2486
                     /locus_tag="VKJ77_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011885761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC44950.1"
                     /translation="MDIFIQQIINGLVLGSVYAIIALGYTMVYGILGIINFAHGDVLM
                     VGAMVALSAIGVMQNHFPGMPLSLVLVIALLVAAVVCALVGYTIERVAYRPLRKAPRL
                     APLITAIGVSILLQTLAMMIWGRNPLAFPQLLPTDPINVITATADRPGAVISMTEIVI
                     IVVAFLVMGGLLLLVHKTKLGRAMRAIAENPG"
BASE COUNT          502 a          693 c          790 g          501 t
ORIGIN      
        1 gacagtcgaa agtggtttga taggccgctc caactcgcgt tggcgcggcc ttttatttgc
       61 ccgctgcgaa aagaagatat cgcctccaaa ggtcgcctcc aaacgtcgcg ctggcgagca
      121 cgccgtcagc gttgctacga gaacgcccgg attgaccggc tgattttgca ctcgcaccat
      181 gaaagtgcgt tctgagaatc catagcgtct ggagggcaat gcaacgaatc ggtgtttacc
      241 cacgatgcca gccaatggtg caacttgcgc accgacgcgg ggcgcaaccc ggttgctccg
      301 agaccttcac cagaggccga agagagggtt gcaatggagg aaaacccctg tcgctgaaca
      361 atattgcacg tctcaaaaac cgagttacaa tgcgcgcgtt ccaagccgga tgggctggaa
      421 acatcagctt ttcaaggcgc cggagaccta ctgaatgcga atgaagtttg gctttgccgt
      481 gaccatcgcg gctgcggttg cgatggcaac ggcgtgcagc aaaaagagtg ataacgagcc
      541 ggcagcgggg gcatcggcgg tgccggaagc ctcggcgagt gtgggggcga gtgcggcggc
      601 cgtgccggca tcggcggcat cggtggctgc ggcctccgcg cccgtaccgg ccagcaatgc
      661 gacggtggtc aggattggcc acgtcgcccc gcttagcgga ccgctggcgc atctcgggca
      721 ggacaacgaa aacggtgcgc ggctcgccat cgaggaaatc agcgcgcagg gattgactat
      781 cgacggtcac gcgattcatc tcgaactgga cacgcaggac gacgcagccg atcccaagaa
      841 ggggattgca gcggcgcagc aactggtggc cgatcacgta gtggcggtcg tcggacattt
      901 gaattcgggc gtgtcgattc cggcatcgaa gatctatagc gacgcggacg tggcgcagat
      961 ctcgggtgcg acgacgaacc ccgccttcac gcagcaagga tacaaaacga cgttccgtgt
     1021 ggtgccgacg gacgcgcgcc aggggccggt gcttgcgacc tacgcgctca agacgttgca
     1081 cgcgcggaaa atcgtggtcg tcgatgacgc cacgctctac ggccggggtc tcgcgaacga
     1141 gtttgcgaaa gccgtggtcg caggcggcgg ccgcattacg gggcacgaag tcacgagcga
     1201 caaagctcgc gatttcaaga cgatcttgaa caagatcaag cgcgtgcagc cagacgccgt
     1261 gatgttcggc ggcatggacg tgaccggcgg accgtttgcc aaacaggcag cggcgatggg
     1321 catcaaggca aggattcttg gcggtgatgg catgtgttcc gccgacatgg cgacgctcgc
     1381 ggccaacgca gcaccgaacg tggtgtgctc ggaacttggc gtggacgtgt cgaagctgga
     1441 caagggtggg gatttcgcgc agcgctacga agcccggttc catctgccgg tccagagcta
     1501 cgcgccgttc acgtatgacg cggtgtatgt gattgtcgac gccatgaagc gggctaattc
     1561 ggttgaagcg ccaaaggtgc ttgccgcgat tgcatcgacg gatttcaacg gcctgacagg
     1621 tcacattgca ttcgatgaca agggcgattt gaaaggcggc ggcgcaatca cgctaatcaa
     1681 tttcaaggat aacaagaaga gcgtcattga cgtcattacg ccgtaaccct gtgttgcggc
     1741 gccgcgcggc gaacgcacat caggttgagc aacccctcga tacgtagtca ctttcggacg
     1801 ttttagagtt ttttttcaag tacgagcggt gcggttgcgt tttttacttc ccttcggttt
     1861 atcggccagc gataaagcgt aaatctagtc gcacgggcta aggagccttc aatggatatc
     1921 ttcatccagc agattatcaa cgggctggtg cttggcagcg tctacgccat catcgcgttg
     1981 ggttacacga tggtgtacgg gattctcggc atcatcaact tcgctcacgg ggacgtgctg
     2041 atggtcggcg ccatggttgc gttgtctgcc attggcgtca tgcagaacca tttcccgggc
     2101 atgccgttat cgttggtgct ggtcatcgca ctactggttg ccgctgtcgt ctgtgcgttg
     2161 gtcggctaca ccatcgaacg cgtggcttac cggcctttgc gtaaggcgcc gcgtcttgcg
     2221 ccgctgatta cggctattgg cgtatcgatt cttctccaga cgctggccat gatgatctgg
     2281 ggccgcaatc cgctggcttt cccgcaactg ctgccgaccg atccgattaa cgtgattacc
     2341 gcgacagccg atcgtccggg cgccgtcatt tcaatgacgg aaatcgtgat catcgtggtc
     2401 gcgttcctcg tgatgggcgg cttgctgctg ctggtgcaca agacgaaact tggccgcgcc
     2461 atgcgcgcca ttgccgagaa tccggg
//
LOCUS       DATGBK010000447         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_167458, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000447 DATGBK010000000
VERSION     DATGBK010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167458"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..784
                     /locus_tag="VKJ77_06475"
     CDS             <1..784
                     /locus_tag="VKJ77_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HMC44951.1"
                     /translation="PHSVTAVLSSKSGNTIRRNMALLPAYSLVLGLLALLGYMALASG
                     VKDMPEFAPYFKAYGANFAVPALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANL
                     YTRNVHKEFVNTNMTPEQETNVAKLVSLLVKVGAVVFILALPLTYAIQLQLLGGIWII
                     QTLPALVLGLYTRVLDHRGLLLGWAAGIATGTWMAVSLKLAGSILTIHLFGYAIPGYA
                     AVWALVVNLVVSIVVSVLVRVIGLKRSDDLSCPEDYLDVAET"
     gene            934..2043
                     /locus_tag="VKJ77_06480"
     CDS             934..2043
                     /locus_tag="VKJ77_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HMC44952.1"
                     /translation="MSSTDTTKQHRSQSRRLLHVLSSPYFRYRHAKYLHAVRVALAML
                     ASIALTSGINIPHGEWSSVTLLVVIGGLQHHGNIRKKAAERAVGTLLGASLGLGLILL
                     QAATHSTMITYVLLAVIAGVCAYHAIGKPGYIALLTAITTIIVAGHGDLSIEVGLWRT
                     LTVLIGIMIALAFSFVLPQYATYSWRYRLADNMRDSARIYGAIMEGRPMPADILTKRF
                     LTMNSRLVSSRSLLASVAKEINVPVAVLDDIQRQHRSILSALEMMATAMPVAAPGFAE
                     SPHKDERAVRHTLLLVARALRFGRVGLLHAATGSAAAAARLEQTANVAAGLAPELQGP
                     YWLAQRLAEQVDRLRLRLIEIERQWNIEGAQPFHR"
BASE COUNT          356 a          615 c          687 g          465 t
ORIGIN      
        1 tccgcactcg gtgacggcgg tgctgtcgtc gaagtcgggt aacacgatcc gccgcaacat
       61 ggcgctgctg ccggcttatt cgctggtgct cggtttgctc gcgttgctgg gttacatggc
      121 gctggcatcg ggcgtgaagg acatgccgga attcgccccg tatttcaagg cgtacggtgc
      181 gaacttcgcc gtcccggcac tgttcctgca cttcttcccg tcgtggttcg tgggcgtggc
      241 gtttgcagcc atcgggattg gcgcgctggt tccggcggcc atcatgtcga tcgcggccgc
      301 caacctgtac acgcgtaacg tgcataagga gttcgtgaac acgaacatga cgccggagca
      361 ggaaaccaat gttgccaagc tggtgtcgct gctggtgaag gtgggcgctg tcgtgtttat
      421 tctggcattg ccgctgacct atgccatcca gttgcaactg ctcggcggga tctggattat
      481 ccagacgctg ccggcgctgg tgcttgggct gtacacgcgg gttcttgatc accgtggcct
      541 gctgctcggc tgggctgccg gtatcgcaac gggaacgtgg atggcggtat cgctgaaact
      601 ggcgggttcc atcttaacga tccacctgtt cggctatgcg atccctggtt atgccgcggt
      661 ctgggcactg gtcgtgaacc tggtggtatc gatcgtggtg agcgtcctgg tgcgtgtgat
      721 cggtctgaag cgctcggacg acctttcgtg ccctgaggat tatctcgacg tcgcggaaac
      781 ctgagtcgaa agggaaaaac gggcgatcca accccgttct gacccgaaag ctggtaaaac
      841 gcccgtaacg gatgttgcgg gcgttttgta tttcggcgcc cggtttcatc aaccttttgc
      901 ccgctttttt acccgtcaac tcatcggaac agcatgtcct cgaccgatac gaccaagcag
      961 caccgcagtc agtcgcggcg cttactgcat gtgctgagct cgccgtattt tcggtatcgc
     1021 cacgccaaat atctgcatgc ggtgcgcgtg gcgctggcca tgcttgcgtc gattgcgctg
     1081 acgtcgggca tcaacattcc ccacggcgaa tggtcgtcgg tgaccttgct ggtcgtgatc
     1141 ggcggtttgc agcatcacgg caatatccgc aagaaagccg cggagcgtgc ggtcggcacg
     1201 ctgcttggcg cgtcgctcgg gttggggctg atcctgctgc aagcggcgac tcattcgacc
     1261 atgatcacgt acgtgctcct ggcggttata gcgggcgtct gcgcgtatca cgccatcggc
     1321 aagccggggt atatcgcgtt gctgacggcc atcacgacga tcatcgtcgc gggacacggc
     1381 gacctgtcca tcgaggtcgg gctgtggcgc accttgacgg tgctgatcgg gattatgatc
     1441 gcgctcgcgt tttcgttcgt gctgccgcaa tacgccactt attcgtggcg ctatcggctc
     1501 gccgacaaca tgcgcgacag cgcgcggatt tacggcgcaa tcatggaagg acggccgatg
     1561 cccgccgaca tcctgaccaa gcgctttctc acgatgaact cacggctggt gagctcgcgt
     1621 tcattgctgg cgtcggtggc gaaagaaatc aacgtaccgg tggcggtgct cgacgacatc
     1681 cagcggcagc atcggtcaat tctcagtgcg ctggaaatga tggcgacggc tatgccggtc
     1741 gcagcaccag gatttgcgga gagccctcat aaggacgagc gcgcggtgcg gcacacattg
     1801 ctgctggttg cccgcgcgtt gcgttttggg cgcgtgggtt tgctgcacgc cgcgaccgga
     1861 tctgccgcag cggccgcgcg actggaacag acggcgaatg tcgcggcggg cctcgcaccc
     1921 gaactgcagg gaccgtactg gcttgcgcaa cggctggcgg aacaggtcga cagattgcgt
     1981 ttgcgattga tcgagatcga gcggcaatgg aacatcgagg gcgcgcagcc gtttcatcga
     2041 tgagcgggtg agcggttgac cggtgagtac cctccgctcc gagggttcac tatccttcga
     2101 ggtcgtccat cacggtcacc atc
//
LOCUS       DATGBK010000448         2305 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_283106, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000448 DATGBK010000000
VERSION     DATGBK010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283106"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VKJ77_06485"
     CDS             <1..229
                     /locus_tag="VKJ77_06485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldose epimerase"
                     /protein_id="HMC44953.1"
                     /translation="VTPGLKRAVNFDLQRPDSVPWYAVTSWTLEPTSDFYCIEPWVGL
                     PDAIHNGRGLRWLAPGKTETAALRLTVSPAA"
     gene            415..1113
                     /locus_tag="VKJ77_06490"
     CDS             415..1113
                     /locus_tag="VKJ77_06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004526694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HMC44954.1"
                     /translation="MVKIIRRLTCVTLVAVLAACGSAPVGPGFYRVERGDTLSKVARA
                     NRTSVQNITRWNNLTDPNAIEVGQVLRVAPPAGSVTAAGTSAPPARTSSADTSDSAPS
                     SSALVTPATSISLIWPAQGSVIRGFDGKSSKGIDIAGASGTQIVAAAAGTVVYAGNGL
                     RGYGNLLIVKHNADYLSAYAHNRALLVKEGQSITQGQPIAEMGDTDTNRVMLHFELRY
                     KGSSIDPSRYLPAR"
     gene            1242..1517
                     /locus_tag="VKJ77_06495"
     CDS             1242..1517
                     /locus_tag="VKJ77_06495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44955.1"
                     /translation="MAAALTLAGCANSAKMTYLPSGDTGFAINCSGGDASTSWAECYK
                     KAGEMCGSYGYDVVSKDVDNGATSGGTVAGIFGANVKNRSMVIRCKQ"
     gene            complement(1480..1713)
                     /locus_tag="VKJ77_06500"
     CDS             complement(1480..1713)
                     /locus_tag="VKJ77_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44956.1"
                     /translation="MTSLWIFLAICPIALGSLLAFASHIDPLSGRWRGAQLLGSLGPR
                     ANLAVGEHVARIGRSIKKHASAIACSESPSIGS"
BASE COUNT          462 a          658 c          735 g          450 t
ORIGIN      
        1 tgtcacacca ggtttgaaac gcgcagtgaa tttcgacctg caacgccccg actcggtacc
       61 ctggtacgcc gtgacgagct ggaccttaga gcccacatcg gatttctact gcatagagcc
      121 gtgggttgga ctccccgatg cgattcacaa cggccgcgga ctgcgctggc tcgcgccggg
      181 aaaaaccgaa acggcagcac tgcggctgac cgtttcgcct gctgcttgaa cgggacacca
      241 ccgggaccgg actgggacaa aaagcgggac aacgagcggc aactagcccg ccatctggcc
      301 tgcttctgag ggcagcgacg ccgggacggt aaaatcggac atttcgccga tgcgcgttct
      361 ggtttgtttg ccgcagcgtt ttcggtttgt gcggcgcttt gcgaggtttt gggtttggta
      421 aaaataattc gacggctgac ctgcgtgacg ttggtcgcag tgctcgccgc gtgcggctcc
      481 gcgccggtcg gaccagggtt ttatcgagtt gaacggggcg acacgttgtc aaaggtcgcg
      541 cgggcgaacc ggacatccgt ccagaacatc acgcgctgga acaacctcac cgacccgaat
      601 gcgatcgagg tcggccaggt gctgcgcgtg gcgccgcccg cgggaagcgt gactgctgcc
      661 gggacatcag caccgccggc ccgcaccagc agcgcggata catcggactc ggcgccatcg
      721 tcatccgcct tggtcacgcc ggccaccagc atttcgctta tctggccggc gcaaggcagc
      781 gtgattcgcg gtttcgacgg taagagttcg aagggtatcg acattgccgg tgcgtccggg
      841 acgcagatcg tggcggcggc cgcggggacg gtagtctatg cggggaacgg gctgcgcggt
      901 tacggcaacc tgctgatcgt gaagcacaac gccgactacc tgagcgccta tgcgcataac
      961 cgggcgctgc tcgtgaagga gggccagagc atcacgcagg gtcaacccat cgcggaaatg
     1021 ggcgacaccg acacgaatcg cgtgatgctg cattttgaat tgcgctacaa aggtagttcg
     1081 attgatccat cgcgctatct gccggcacgg taacgcgccg ctcaattgaa gacgggcacg
     1141 ctcaacgaag tggggcgtgc tcaatcaaac acagggaaga atcgatgaaa ttacaagttt
     1201 gcgccacgac gcttggaaag gtagccgcga cggctgcggt aatggcggct gcgctgacgc
     1261 tcgctgggtg cgccaactcg gcaaagatga cctatttgcc gtccggtgac accggttttg
     1321 cgatcaattg cagcggtggc gacgcgagta cgagctgggc ggaatgctac aagaaggcgg
     1381 gcgagatgtg cggttcgtac ggctacgacg tggtgtcgaa ggatgtcgac aacggggcga
     1441 cgtcgggcgg aacggtggcc gggattttcg gcgcgaacgt caagaaccga tcgatggtga
     1501 ttcgctgcaa gcaatagcgc tcgcgtgttt cttgatcgag cggccaatgc gcgcaacgtg
     1561 ttcacccacc gccaggtttg cacgcggacc cagcgaaccc agcagttgcg cgccgcgcca
     1621 gcgaccggac aacgggtcga tatgcgaggc gaacgccagc aacgaaccca gcgcgatcgg
     1681 acaaatggcg aggaagatcc acaacgaggt catgatcggg aatcgttttc aggaattggg
     1741 atcatacctt tgcggcaaga aattcgcata acccgccgtc aaagctgagc ttcgatcgta
     1801 gtaattacgt gtcgcggcct tcgttgacca gacacgcttg gcctctggaa acgcccgtgc
     1861 acattgggtt acgcgttgat acaagtgatc acaatctgcc cgattgatgc actctagaat
     1921 acgttcagcc cgcgattctc tgcgcgaaca gttctctcgg gtcagaagcc tcgatgtgcc
     1981 cgcatcgggg cttcgcttta tttgggctgt tagtttgggc gtcagcaccc tgctccggct
     2041 ttcggctttc ggctttcggc ttgggggctc tgacgctctg agcctgcggg actcgcagag
     2101 acccgcattt cggctacatc ggtgcccgga gccatccatg gaatacaaaa ggccgtttct
     2161 gactgacgtc ggaaacggcc tttttgcgtg tgctgcgctt catgcgttgc gggcggaaat
     2221 caatgcgacg cgtgatcgtg atcgtgctga tgcgcgctgg ggtcttcagc ggcctgacat
     2281 gccggacaaa tgccctttaa ctcga
//
LOCUS       DATGBK010000449         2056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_260235, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000449 DATGBK010000000
VERSION     DATGBK010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260235"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(317..>2056)
                     /locus_tag="VKJ77_06505"
     CDS             complement(317..>2056)
                     /locus_tag="VKJ77_06505"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC44957.1"
                     /translation="KGLRRGEFHVVYQPIFDVSTSACVGVEALVRWRNDTFGGDGPDY
                     FIAHLERSSLIGPLTRFVLRQASIDIRQTPGVDHWHISVNICARHLTSGCFVDDIRQA
                     AGTMLNRTVLEITERSCAGRTPQVRAALSTLQQGGVLLSLDDFGTGFSNLDLLGDFNF
                     DLVKVDRRFLVTDDENRPVFLKAVATLVHALGAKVVAEGVETTEQHRAVEQSGIDLAQ
                     GYRYGMPMTIKKLREFASAETTQRQFVATQQNGVPVVSENTASAADERYRESAIGATR
                     LLESGAEEVLDRITRIASRALKMPIAAVSVLHGQTQTFMASVGLDIQSTPRHIAFCQR
                     ALNLDRLLVVRDARAHPDFTANPLVTDAPRIRFYAGIPLRTLSGIAIGTLCVMDRVPR
                     RFSFEQREMLMDLGRMIEHELRLRELEEPSGLPIQQIIERLRNQHALYFDTFYQAPVA
                     IAHIGRDWTWRRMNAACVKLFGNSRESLTMTTLPELLDETERNALQQAVNALDEPYHA
                     GVTVVEVTLRLPDGRKKGARVQIALQRDTQSPDDELLFVFHDTHAEQQEKTTLDAREA
                     DLHQAAQSASDAL"
BASE COUNT          397 a          616 c          631 g          412 t
ORIGIN      
        1 agtccgcgca acacgcgccg ggctccgttg atggtcgcgc tgatctcata ctcgacgcgc
       61 tctcccgcga gcgcacgctg tacgtacggc tctatggtcg cacatagtcg gggtcgagca
      121 cttcacgcgc ggtgcgtccg aggattgctt cgggatccag cccgaaccag tcacggtaga
      181 tggagttcgc aaacctaaag cgccgctcgc tatcgatgta ggctaccagc accggcaaat
      241 tgtctgcgaa ggcgcgcaga tcgaagcggt tgctgaccag ctgctgcgcg gtgtccgcga
      301 gctgcccata ggaatttcaa agagcgtccg aagctgattg cgcggcctga tgaaggtcag
      361 cttcacgcgc atcgagcgta gtcttttcct gttgctcggc gtgggtgtcg tgaaagacga
      421 acagaagctc gtcgtcgggg gattgggtat cacgctgcag tgcgatctgc acccgcgcac
      481 ccttcttgcg gccgtcaggc aggcgcagcg tgacttccac cacagtcacg ccagcgtgat
      541 acggttcatc gagggcgttc acggcttgct gcagcgcgtt gcgttccgtt tcatcgagga
      601 gttcgggcag cgtcgtcatt gtcaggcttt cacgcgagtt gccgaacagt ttgacgcagg
      661 ccgcgttcat gcgccgccac gtccagtcgc gtccaatatg ggcgattgcg accggggcct
      721 ggtagaacgt atcgaaatag agcgcgtgct gatttcgaag ccgctcgata atctgttgaa
      781 tgggcagccc ggacggttct tccagctccc gaagccgcag ctcgtgttcg atcatcctgc
      841 cgagatccat caacatctcg cgctgttcga atgagaaccg gcgcggcacg cggtccatca
      901 cacacagcgt accgatcgcg atgccagaga gcgttcgcaa cggaatgcct gcatagaagc
      961 ggattcgcgg cgcgtccgtc acgagcgggt tggctgtgaa gtccggatgg gcgcgtgcgt
     1021 cgcgaacgac cagcaggcga tcgaggttaa gcgccctctg gcagaacgcg atatgacgcg
     1081 gcgtgctttg gatgtcgagt ccgaccgatg ccatgaatgt ctgggtttga ccgtgcagaa
     1141 ccgacacggc ggcaatcggc attttcagcg cgcgcgatgc aatacgggtg atccggtcca
     1201 ggacttcctc cgcgccgctc tcgagcagtc gcgtcgcacc gatggccgat tcccgatatc
     1261 gttcatcggc ggcactcgcg gtattttccg atacgacggg cacaccgttc tgctgcgtcg
     1321 ccacgaactg gcgttgcgtc gtttcggcgg atgcaaactc ccgcaatttt ttgattgtca
     1381 ttggcattcc ataccgatat ccctgtgcca gatcgatgcc cgactgttcc acggcgcgat
     1441 gttgttcggt ggtctccacg ccttccgcta ccaccttcgc accgagcgcg tggacgaggg
     1501 tggcgactgc cttgagaaaa accgggcgat tctcgtcgtc ggtcacgaga aaccggcggt
     1561 ccaccttgac gagatcgaaa ttgaaatcac cgagtaggtc caggttactg aagccggtgc
     1621 cgaaatcgtc gagagacagg agtacaccgc cctgctgtag agtactcaac gccgcgcgaa
     1681 cttgcggcgt gcgcccggcg caactgcgct cggtgatctc cagaacggtg cggttaagca
     1741 tcgttcccgc tgcctgccgg atgtcatcga caaaacagcc gcttgttaga tgtcgcgcgc
     1801 aaatattcac ggaaatatgc cagtgatcaa cgcccggcgt ctgcctgata tcgatgcttg
     1861 cctggcgcag tacaaaccgg gtcaacgggc cgatcagcga ggagcgctcg aggtgcgcga
     1921 tgaaataatc aggaccgtct ccgccgaagg tgtcgttacg ccatcggacc aatgcctcga
     1981 cgccgacgca cgcggaggtg ctgacatcga agatgggctg gtacacgaca tggaactcgc
     2041 cgcgacgcag gccctt
//
LOCUS       DATGBK010000450         1894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_236921, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000450 DATGBK010000000
VERSION     DATGBK010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236921"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1412
                     /locus_tag="VKJ77_06510"
     CDS             <1..1412
                     /locus_tag="VKJ77_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC44958.1"
                     /translation="VFMGNGIQTATLLLAAMYSGLVANPLNLLCQPSQVRYIVEHSDT
                     RAIFVSEESRTAITSAIAALRDEGFNREILVVTTEPDALEAPVFAPPELALADAAAQP
                     SARPNTSQLDTVSENPPRAEDVALLMYTSGTTGLPKGVLLTHRNLVANARTITAEHRL
                     TADDRVFASLPLFHINGLVVTLLAPLHHGGSVVVAPRFSARTFWRDVTRHGCTWINVV
                     PTIVAYLLNQQDDHAFDLSALKFCRSASAALPVEHHRAFEARFGVGVIETMGMTETSA
                     PVFSNPYEINKRRIGSIGLPSGASARVIDAQGGDCANNECGEIVLCGEQVMSGYYKRP
                     EETRAAFTEDGWLRTGDLGYRDAEGYFYINGRSKELIIKGGENIAPREIDEALLKHPG
                     VLDAAAVGLPDAAYGQEIVAFVVPRTLDGPLALDLADLRNHCVRELGRFKTPKEFRLI
                     DELPRGPSGKVQRLKLLER"
     gene            1556..>1894
                     /locus_tag="VKJ77_06515"
     CDS             1556..>1894
                     /locus_tag="VKJ77_06515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC44959.1"
                     /translation="MEQQATQPRRVKTRHIILAVMCLMYFISYIDRVNIAVAGPIIRH
                     EMGLTSGQLGLVFSAFAYPYAVMQIVGGWLADKYGPKRVLTVLSLIWGVATLATGFAG
                     SVAMLVGLRFM"
BASE COUNT          371 a          565 c          590 g          368 t
ORIGIN      
        1 cggtgttcat gggcaacggc atccagacag ccacgctgct gctcgccgca atgtacagcg
       61 ggctcgttgc gaaccccttg aacctgctgt gccagccgtc gcaggtgcgt tatatcgtcg
      121 agcattccga cacacgggca atatttgtat cggaggaatc gcgaactgcg attacgtctg
      181 ccattgccgc gttgcgcgac gagggtttca accgcgagat cctggtcgtt accaccgagc
      241 ctgacgcgct tgaggcgcca gtgttcgcgc ctccagaact ggcgctcgcc gatgctgcag
      301 cgcagccttc agcgcggccg aatacatcgc agttggatac cgtcagtgaa aacccgccgc
      361 gagcggaaga cgtcgcgctt ctgatgtaca cgtccggcac gaccggtctg cctaaaggtg
      421 tgctcctcac gcatcgcaac ctggtggcaa acgcacgcac gattacagcc gagcatcggc
      481 ttaccgcgga cgatcgcgtg ttcgcttcac taccgctgtt tcacatcaac ggcttggtgg
      541 tgacacttct ggccccgctg catcacggcg gctccgtcgt cgtagcaccg cgtttctctg
      601 cccgtacttt ttggcgcgat gtcacgcgtc acggctgcac ctggatcaac gtcgtgccta
      661 cgatcgtcgc ttatctgctc aaccagcagg acgatcacgc cttcgacctg tccgcgctca
      721 aattctgccg cagcgcatcg gcggcgctgc cggtcgagca tcaccgggcg ttcgaggcgc
      781 gctttggtgt tggcgtgatc gaaacgatgg gcatgacgga gacctcagcc ccagtcttta
      841 gtaatccgta tgagatcaat aagaggcgga ttgggagcat cggcctgcca tctggtgcga
      901 gcgcgcgcgt gatcgacgcg caaggcggcg actgtgccaa caacgaatgc ggcgagatcg
      961 tgttgtgcgg ggaacaggtg atgagcggct actacaagcg cccggaagag acgcgagcgg
     1021 cgttcacgga ggacggctgg ctgcgcacgg gtgaccttgg ttatcgcgat gcggagggtt
     1081 acttctacat caatggccgc tcgaaggaac tgattatcaa gggcggcgag aacattgcgc
     1141 cgcgagagat tgatgaggcg ttgctgaagc acccgggcgt gctggatgcg gcggcggtcg
     1201 gcttgccgga tgccgcgtat ggacaggaga ttgtcgcatt cgtcgtgccg cgcacgctcg
     1261 acggcccgct cgccctcgat ctcgccgatc tcaggaatca ctgcgtgcgc gaactcggcc
     1321 gcttcaagac gccgaaagaa ttccgcctga tcgatgaact gccgcgcggg ccgtcgggca
     1381 aggtgcaacg gctgaagctg ctggaaaggt gatccacaca gcgcggcgat agccactcac
     1441 gcaagggaag cacccggcac aaacaacgca atacggaata agcagaacgg aaaagcagta
     1501 ccgaagcgcc gatcacgaac gtcaaagacg tcacatggaa gagacaggag acagtatgga
     1561 acagcaagcg acgcaaccgc ggcgtgtgaa gacgcgtcac atcattctcg cggtcatgtg
     1621 cctgatgtat ttcatctcat acatcgaccg cgtgaacatt gccgtggccg gccccatcat
     1681 ccggcacgag atgggattga cttcggggca gctcggcctt gtgttttccg cgttcgcgta
     1741 tccgtatgcc gtcatgcaga tcgtgggtgg ctggcttgcc gacaagtacg gacccaagcg
     1801 tgtgcttacc gtgctttctc tcatctgggg cgttgcgacg cttgcgaccg gctttgccgg
     1861 cagcgtggcg atgctcgtcg gcttgcgctt catg
//
LOCUS       DATGBK010000451         1615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213791, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000451 DATGBK010000000
VERSION     DATGBK010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213791"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..216)
                     /locus_tag="VKJ77_06520"
     CDS             complement(<1..216)
                     /locus_tag="VKJ77_06520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HMC44960.1"
                     /translation="MSKTSDRINLTNQFLIAMPNMADPTFSGTVVYLCDHSERGALGL
                     VINRPTDIDLQSLFNRIDLKLEIEPLVH"
     gene            246..>1615
                     /locus_tag="VKJ77_06525"
     CDS             246..>1615
                     /locus_tag="VKJ77_06525"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003904 - deoxyribodipyrimidine
                     photo-lyase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HMC44961.1"
                     /translation="MADFDLGLVWFRRDLRVADHAALYHALTRCRRVLCAFVFDSEIL
                     SPLPQNDRRVPFIHASLIEVDKTLRDAGGGLMVRHGVPSHEIPALARECGVDAVFTNR
                     DYEPSAKARDEDIGKKLAGADVAFFTFKDQVIFHQDDVLTGAGKPYTVFTPYKRNWLA
                     SLTPDALKPYASEENLAGLARPPAGVKHGIPSLEALGFSATHAPALPAGSSGAYQLFD
                     DFRDRMVDYDRTRDFPSVKGPSYLSVHLRHGTISIRALARTAHDAQRHGNRGAETWLS
                     ELIWRDFYFSVLHHFPYVGVPGDHKAFRPEYDRIEWETGDAADANFAAWCEGRTGYPL
                     VDAAMRQINQSGYMHNRLRMVVASFLTKDLGLDWRRGEQYFESLLNDFELSSNNGGWQ
                     WASSSGCDAQPYFRIFNPITQSEKFDTHGKFIRHYVPELAALSDKDIHAPWKAKPDAL
                     KAAKISL"
BASE COUNT          318 a          452 c          500 g          345 t
ORIGIN      
        1 atgcacgagc ggctcgatct cgagtttcag gtcgatgcga ttgaaaagcg attggaggtc
       61 aatgtcggtc ggccggttga tcaccaggcc gagcgcaccg cgctcgctgt gatcgcaaag
      121 gtagactaca gtccccgaga acgtgggatc ggccatgttg ggcatggcga tcaggaactg
      181 attggtcaaa ttgatgcgat cggaagtctt ggacataatt cgaattttag caaaggcact
      241 gcttgatggc cgactttgat ctggggctag tctggtttcg acgagacctg cgcgtagcag
      301 accatgctgc actctatcac gcactaactc gctgtcgccg ggtgctgtgc gccttcgttt
      361 tcgacagcga aattctctcg cccctccctc aaaatgatcg gcgcgttccg tttattcatg
      421 ccagcctgat tgaagtcgat aaaaccctgc gcgacgcggg cggcggcttg atggtgcggc
      481 acggtgtgcc gtcgcacgag attccggcgc tggcgcgcga gtgcggcgtt gacgcggtgt
      541 tcacgaaccg cgactacgaa ccgtctgcga aggcgcggga cgaggatatc ggaaaaaaac
      601 tggctggcgc ggacgtggcg ttcttcacgt tcaaggacca ggtcattttt catcaggacg
      661 acgtgctgac gggcgcgggc aagccctaca ccgtgttcac gccctataag cgcaactggc
      721 tcgcgtcact gacgccggat gcgttgaagc cgtatgcatc ggaggaaaat ctcgccggtc
      781 tggcacgccc gccggctggt gtgaagcacg gcattccgtc gctggaagcg cttgggttca
      841 gtgccacgca tgcgcccgcg ttgcccgcag gatcgagtgg cgcgtaccaa ctcttcgatg
      901 acttccgcga ccgcatggtc gattacgacc ggacccgcga ctttccgtcc gtcaagggac
      961 cgagttatct cagcgtgcat ctgcggcacg gcaccatctc gattcgcgca ttagcccgta
     1021 ccgcacacga cgctcagcgc cacggcaacc ggggcgcgga aacgtggctg tccgaattga
     1081 tctggcgcga cttttatttt tcggtgctgc accattttcc gtatgttggc gtgccgggcg
     1141 accacaaggc gttcaggccg gaatacgacc gtatcgagtg ggaaacgggc gatgccgccg
     1201 atgcgaattt tgccgcgtgg tgcgaaggcc ggacgggcta tccgctagtc gatgccgcca
     1261 tgcgccagat caatcagtcg ggttatatgc ataaccgctt gcggatggtc gtggcgagtt
     1321 ttctcacaaa agatctgggg cttgactggc ggcgggggga gcaatatttc gagtcgctgc
     1381 tgaacgactt tgagctgtca tcgaataatg gcgggtggca gtgggcgtcc tccagcggtt
     1441 gtgacgccca accgtatttc cgcattttca atccgatcac gcagtcggag aaattcgata
     1501 cccacggcaa gttcatccgt cattacgtgc cggaactcgc cgctttgtcg gataaggaca
     1561 tccatgcacc gtggaaagcg aaaccggatg cgttgaaggc cgcgaagatt tcgct
//
LOCUS       DATGBK010000452         1552 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_329426, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000452 DATGBK010000000
VERSION     DATGBK010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329426"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..780)
                     /locus_tag="VKJ77_06530"
     CDS             complement(<1..780)
                     /locus_tag="VKJ77_06530"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HMC44962.1"
                     /translation="MIRTFVRFTALGVALLFPVASVAQTRIALPPPKTDSAVLGALET
                     RYYTEQFAAEPTSATGAGLHADDGKLPDYSAAAYAQRITRSKRWLAQLAKLNTSSFSV
                     DDRADVAIMRASLETELLIDRDLEQWRHNPSRYTNIASQSIYALFSRNFAPLPVRMRS
                     AIARERAIPAMLASGKANITTVDPTTATLSASNMKGAVTFFSTTVPAAFAGVADPALQ
                     AEFKTSNDAVIASLNDYIAAMQAGPLATPSGTYAIGPKVFAQ"
     gene            complement(834..>1552)
                     /locus_tag="VKJ77_06535"
     CDS             complement(834..>1552)
                     /locus_tag="VKJ77_06535"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF037026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC44963.1"
                     /translation="ISSSHTFVAHDANGPAGMVIGNDYGSMAYVALMAVDPALQRRGI
                     GTALMDALIGWAEQRAIACLELDASGMGAPLYERYGFRDDLETHIYTNDNPGSVQSPA
                     RRYQPGDFDALLACDRAAFGADRGELLERFFNDPTKTTFVDEVAGEIRGFAGSVYPSI
                     IGPVIASDALSAARLFATAHAAMGGPSRACIPSRNAAAIGIATALGFTRSRSLRHMIR
                     GTPAIGARGDIYARINLGQG"
BASE COUNT          309 a          474 c          472 g          297 t
ORIGIN      
        1 ctgtgcaaaa acttttggac cgatcgcgta cgtgcccgat ggagtcgcta gcgggccggc
       61 ttgcatcgca gcgatgtaat cgttgagtga cgcgatgacc gcgtcgttcg atgtcttgaa
      121 ctccgcttgc agcgccgggt ctgcaacgcc ggcaaacgct gccggaaccg tcgttgaaaa
      181 gaacgtgacc gcgcccttca tattggatgc ggataacgtc gcagttgtcg gatcaacagt
      241 cgtgatattt gctttgcccg atgcgagcat cgcgggaatg gcccgctcgc gcgcgatcgc
      301 cgaacgcatg cgaaccggca aaggcgcaaa gttgcgtgag aacagcgcat agatcgattg
      361 tgatgcgatg tttgtgtagc ggctgggatt atgacgccac tgttcgagat cccggtcgat
      421 caacaattcg gtttcgagcg atgcgcgcat gatcgcaacg tctgcccgat cgtctacgct
      481 gaacgatgac gtgttaagct ttgcgagctg cgccagccat cgcttagaac gggtgatgcg
      541 ctgcgcgtac gcggccgccg aatagtcggg cagcttgcca tcgtccgcgt gaagtccggc
      601 gcccgttgcg ctggtgggct ccgccgcgaa ctgctcggta taataccggg tttccaacgc
      661 gccaagcacg gcagaatccg tcttgggcgg cggcaaagcg atgcgcgtct gggcgacgga
      721 agccaccggg aaaagcagcg ctacaccgag cgctgtaaag cgaacgaacg tgcgtatcat
      781 ggcggcgcgt tccggttcgt cgccgggaat tccctcacgg caaacgcgcg ctgctatccc
      841 tgaccaagat ttattcgtgc gtagatgtcg ccccgagccc cgatagcggg cgtaccacga
      901 atcatgtgcc gcagcgaacg cgagcgggta aatcccagcg ccgtagcgat accaatcgcc
      961 gcggcattgc ggctaggaat gcacgcacgg ctcgggccac ccatcgcggc gtgcgccgtc
     1021 gcaaaaagac gcgcggccga tagtgcatcg ctcgcgataa ccggcccgat gatcgacgga
     1081 tacacagaac cggcgaaccc ccgaatttca ccggctacct cgtccacaaa cgtcgttttt
     1141 gttgggtcgt tgaagaagcg ctctagcaac tcgccccggt ccgcaccgaa cgccgctcga
     1201 tcgcacgcca aaagtgcgtc gaagtcgccg ggttgatatc gcctggcggg cgactggacc
     1261 gaacccggat tatcgttcgt gtagatatgg gtttccagat cgtcgcggaa tccgtagcgt
     1321 tcgtacagag gggctcccat tccggatgca tcaagttcaa ggcacgcgat cgcacgttgt
     1381 tccgcccagc cgatgagtgc atccatcaac gctgtgccga taccgcgccg ttgcaacgcc
     1441 gggtcgaccg ccattagcgc aacgtacgcc atgctgccgt agtcattccc gatcaccatc
     1501 cccgccggtc cattcgcatc gtgggcgacg aacgtgtgcg agctgcttat cg
//
LOCUS       DATGBK010000453         2101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_97866, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000453 DATGBK010000000
VERSION     DATGBK010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97866"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..635)
                     /locus_tag="VKJ77_06540"
     CDS             complement(<1..635)
                     /locus_tag="VKJ77_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44964.1"
                     /translation="MSAPLLEITDLRVRFGETMAVDGVSLKIEAGERVALVGESGSGK
                     SVTALSILRLLRDAELSGSIRLDGQELLTKSEPAMRKLRGSDIAMIFQEPMTALNPLY
                     TIGDQIAETIQLHDGVSARDARRRAIELLARTGITEPEKRVDRYPHQLSGGQRQRAMI
                     AMALACRPRLLLADEPTTALDVTIRAQIVELLLELQRDEAASRGMAVLLIT"
     gene            complement(632..1786)
                     /locus_tag="VKJ77_06545"
     CDS             complement(632..1786)
                     /locus_tag="VKJ77_06545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008917481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44965.1"
                     /translation="MSGSIRAFNSNNWSDELNRSLLRTPQDSDAQPLSVPVSITPGQR
                     VWQRFKRNRLGYWSLVIFVIAFAISLAGPLWSNDKPLVVRYQGHLYFPLVKTYAETTF
                     GGDFPTPADYLDPYIRDRFSEGSNFAVYPPNHYYYDTLNYFSKASNPAPPSRENWLGT
                     DDRGRDVFARLLYGFRVSVIFALVLTAIGTVLGLLAGAVQGYFGGRTDLTGQRLIEIW
                     SALPELYLLIIFASIFEPTLTLLVVLLSLFGWIGLSDYVRAEFLRNRMQDYVRAARAM
                     GLSNAQIIWRHILPNSLTPVITFLPFRMSGAILALTSLDFLGLGVPPPTPSLGELLAQ
                     GKANLDAWWISLSTFGVLVATLLLLTFMGDALRNALDTRISDAVKAGGGQ"
     gene            complement(1740..>2101)
                     /locus_tag="VKJ77_06550"
     CDS             complement(1740..>2101)
                     /locus_tag="VKJ77_06550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009890352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC44966.1"
                     /translation="KNAFLDEIRKQYVLTARAKGLSERRVLWKHVFRNALLPLIVGFP
                     GAFIAAFFTGSLLIETLFSLDGLGLLSYESVVRRDYPVVLGTLYLFTLIGLATKLISD
                     LCYVWVDPRIQFEQLER"
BASE COUNT          461 a          636 c          636 g          368 t
ORIGIN      
        1 tgcgtgatca gcaacacggc catgccgcgc gaagcggctt cgtcgcgttg caactccagc
       61 agcaattcca cgatctgcgc gcggatcgtc acatcgagcg cggtcgtggg ttcgtcggcg
      121 agcaaaagac gcggccggca cgcgagcgcc attgcaatca tcgcgcgctg acgttgtccg
      181 cccgagagct gatgcgggta tcggtcgacg cgtttttccg gctccgtgat ccccgtgcgg
      241 gcaagcagct cgatcgctcg ccgacgggca tcgcgagcgg acacgccatc gtgcagctga
      301 atcgtctccg cgatctggtc gccgatggtg tacagcgggt tgagtgcggt catcggctcc
      361 tggaagatca tcgcgatgtc cgaacctcgc agcttgcgca tcgccggttc gcttttggtg
      421 agcaactcct ggccgtccaa gcgaatcgag ccgctcagct cggcatcgcg caaaagccgc
      481 aggatagaca acgccgtcac gcttttgccc gatcctgact cgccgaccag cgccacgcgt
      541 tcaccggctt cgatcttgag gctcacccca tcgacagcca tggtctcgcc aaagcgcacc
      601 cgcaggtctg tgatttccag caatggcgcg ctcattgacc gcctcctgct ttgacggcgt
      661 cggaaatacg tgtgtccagc gcgttacgca gcgcatcacc catgaacgtg agcagcaaca
      721 gggtcgcgac cagcacgccg aaggtggaca gcgagatcca ccacgcgtcg agattcgcct
      781 tgccttgcgc gagcaattct ccaagcgatg gcgtgggcgg tggcacgccc aggcccagga
      841 aatccaggct ggtcagcgca aggatcgccc cgctcatgcg aaacggcagg aaggtgataa
      901 cgggcgtgag gctatttggc aggatatgac gccagatgat ctgggcgttg gataatccca
      961 tcgcccgcgc cgctcgcacg taatcctgca tgcggttgcg caggaactcg gcgcgcacat
     1021 agtccgataa cccgatccat ccgaacaacg acagcagcac gacgagcaga gtcaaggtcg
     1081 gttcaaaaat agacgcaaag ataatcagca gatacaactc cggcaacgca ctccagatct
     1141 cgatcagacg ctgtccggtg aggtccgtac gaccgccgaa gtagccttgt accgcgccgg
     1201 ccagcagacc gagtacggtt cctatcgccg tcaggaccag cgcgaagatg accgagacgc
     1261 gaaagccata gagcaatcgg gcgaacacat cgcggccgcg atcgtcggtg ccgagccagt
     1321 tttcacgcga tggcggcgcc gggttcgagg ccttggaaaa atagttgagc gtgtcgtagt
     1381 aatagtggtt cggcggataa acggcgaagt tgctgccctc gctgaaacgg tcgcgaatat
     1441 acgggtcgag gtagtcggcg ggcgtcggaa aatcgccgcc gaatgtggtc tcggcgtacg
     1501 tcttgaccag cgggaaataa agatgcccct gataacggac gaccaacggt ttgtcattcg
     1561 accacagcgg tcccgcgaga ctgatcgcga acgcgatcac aaaaatcacc aggctccagt
     1621 agccgaggcg gttgcgtttg aaacgttgcc agacgcgttg tcccggcgta atcgacacag
     1681 gcacgctgag cggctgggcg tcgctgtctt gaggcgtacg gagcagggaa cggttcaact
     1741 catcgctcca gttgttcgaa ttgaatgcgc ggatcgaccc agacatagca gaggtcggag
     1801 atcagcttgg tggcaagtcc gatcagcgtg aacagataca gcgtaccgag cacgaccgga
     1861 taatcgcgcc gcacgacgga ctcgtacgag agcaggccga ggccatcgag tgaaaaaagc
     1921 gtttcgatca gcaaactgcc cgtaaagaac gccgcgatga acgcgccggg aaagcccacg
     1981 atcagtggca acaacgcgtt gcggaacacg tgcttccaca gcacccttct ctccgataac
     2041 cccttggccc gcgccgtcag cacatattgt ttgcggattt catctagaaa cgcgttcttg
     2101 g
//
LOCUS       DATGBK010000454         1736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_5109, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000454 DATGBK010000000
VERSION     DATGBK010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5109"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..528
                     /locus_tag="VKJ77_06555"
     CDS             <1..528
                     /locus_tag="VKJ77_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HMC44967.1"
                     /translation="DRLADLVSGFRTQRLPLDRSGESQTMDAKVASKKLLGGFQQADL
                     GGLSFWTQPNSWHHFMSDHIVSFSVIPLSAGETLVRTKWLVHKDAKEGIDYNVDNLTA
                     VWRATNDQDRALVEFSQLGVTSSAYEPGPYSPFTEGLVEKFCEWYIGRLDDYANTPDE
                     ASVNTHGEKVVSFKR"
     gene            588..>1736
                     /locus_tag="VKJ77_06560"
     CDS             588..>1736
                     /locus_tag="VKJ77_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018425101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid-cluster NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC44968.1"
                     /translation="MMRDQATFEPAPNRVTQPEFWGTLPARWDSDTDETLVCCHVRQE
                     THDVKSFFFRAPVERTFVFEPGQFITLELEIDGESINRCYTISSPPTRPHTISITVKR
                     VPGGKVSNWLHDNLQTGGKVRVLGPAGEFTCARHPARKFLFLSAGSGVTPLMSMSRAH
                     HELGEDRDIVFVHSARTPDDIIFARELDLIASNQTNFRTAFVCERVGARTSWPGVTGF
                     LTLPLLKLIAPDFLEREIFTCGPAPYMKAVRDLLAEGGFDTTHYHEESFSFETIAEVA
                     AQLTTAHVADALQSTETFAEMRESAVGFDLSPELTPAPVETTFKVSFAKSNREIECGS
                     AQHVLDAAKKSGVRLPASCTQGMCGTCKVKLLSGEVEMKHNGGIRQREI"
BASE COUNT          361 a          498 c          526 g          351 t
ORIGIN      
        1 gaccggctgg ctgaccttgt cagcggtttt cgcacgcaac gtttgccact cgatcgcagc
       61 ggcgagtcgc agacgatgga cgccaaggtg gcgtcgaaga aattgctggg tggctttcaa
      121 caagccgatc tcggtggtct ctcgttctgg acccagccga attcgtggca tcacttcatg
      181 agcgatcaca tcgtgagctt ctcggtgatc ccgctgtcgg ctggcgaaac cctcgttcgc
      241 actaaatggc tcgtgcacaa ggacgcgaag gaagggattg attacaacgt cgacaacctg
      301 accgccgtct ggcgcgcgac caacgatcag gaccgtgcgc tggtggaatt ctcgcaactc
      361 ggggtgacga gcagcgcgta tgaaccgggt ccgtattcgc cgttcacgga aggtctggtt
      421 gagaaattct gcgagtggta tatcggtcgg ctcgacgact atgcgaacac accggatgaa
      481 gcgagcgtga acacgcacgg cgaaaaagtc gtgtcgttca agcgctaact catcgagcaa
      541 acaacagagc attcaacgtc gcactcaaag ctacagcgga gaaacagatg atgcgcgatc
      601 aggcgacgtt cgagcctgcc ccgaaccgag tgacccagcc cgagttctgg ggcacgcttc
      661 ccgcccgttg ggatagcgac accgacgaga cgctcgtctg ctgccacgtt cgtcaggaaa
      721 cgcacgacgt aaagagcttt ttctttcgtg cgcccgttga acggactttt gttttcgaac
      781 cgggccagtt catcacgctg gagctggaga tagacggcga atcgatcaat cgctgctata
      841 cgatctcctc gccgcctacg cgtccgcata ccatctccat cacggtgaag cgcgtgccgg
      901 gcggcaaggt gtcgaactgg ctgcacgaca atcttcagac gggcggcaag gttcgggtgc
      961 tgggacccgc cggcgagttc acttgcgcgc ggcatccggc gcgcaagttc ctgtttttat
     1021 cggcgggatc gggtgtcacg ccgttgatgt ccatgagccg tgcgcatcac gaactcggcg
     1081 aggatcgcga cattgtgttt gtgcacagcg cacgcacgcc cgacgacatc atcttcgcgc
     1141 gtgagctcga tctgattgcg tcgaaccaga cgaatttccg cacggcgttc gtgtgcgaac
     1201 gagtcggtgc acgtacgagc tggcccggcg tgacgggttt cctcacgctg cccttgctca
     1261 agctgatcgc gccggatttc cttgaacggg aaatctttac ctgcggtccg gcgccctaca
     1321 tgaaagcagt gcgtgatctg ctcgcggaag gtggtttcga cactacgcat tatcacgagg
     1381 aaagcttttc cttcgagacg atcgcggaag tcgcggcgca actgacgacc gctcacgtag
     1441 ccgatgcatt gcagtccacc gagacatttg cggagatgcg ggaaagtgcg gttggttttg
     1501 acctctcgcc tgaactcacc cccgcgcctg tggagaccac gttcaaggtg agttttgcca
     1561 agagcaatcg cgagatcgaa tgcggcagcg cgcagcatgt gctggacgca gccaagaaat
     1621 cgggcgtgcg cttgccggca tcgtgtacgc aaggcatgtg cggcacctgc aaggtcaagt
     1681 tgctctctgg cgaagtcgag atgaaacata acggcggtat tcgtcagcgc gaaatc
//
LOCUS       DATGBK010000455         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_329453, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000455 DATGBK010000000
VERSION     DATGBK010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329453"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(204..506)
                     /locus_tag="VKJ77_06565"
     CDS             complement(204..506)
                     /locus_tag="VKJ77_06565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011547642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44969.1"
                     /translation="MQFPAGSVQALSSAASTVFSIGIVFLGYWGIHEGSHWRSGDVSV
                     ALLALAGFACLGSVPWLATSPTKHPDDESRLRLARHAFLGGVGALWLAIIVSVFTQ"
     gene            complement(750..>1518)
                     /locus_tag="VKJ77_06570"
     CDS             complement(750..>1518)
                     /locus_tag="VKJ77_06570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011882241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC44970.1"
                     /translation="GPTVLTRYNGSPSLDVSGRPADGTSSGAAMAEMERLAQALPVGV
                     GYDWTDSALEETRAARLTPILIGLSLLAVFMALAALYESWTIPLAVLTIVPLGVIGAV
                     IAMLLRGMPNDVYFKVGMITVIGLSAKNAILIVQFARTLSADGTPLKDAIVAAASARF
                     RPIVMTSAAFLLGVVPLLVSSGAGAESRRSIGTGVFGGAITATVLGLVFTPLAFYIVV
                     SGQRFIQNRVKTMTREKVTVEAESEAPRRDVQGSQEG"
BASE COUNT          336 a          486 c          462 g          234 t
ORIGIN      
        1 cgaggctcca gacgacaggc ggcaccgccg atgcgtacag cgcgccgagc tcgccccaat
       61 gcggcaaggc gagccgatac gcaagccatg gcaggacgag attgacaccg agttcaacga
      121 caagacctgc gcgtatcttc atgacgaaat ggtgctgagg tagagaaggg gaggcactag
      181 gggaagcacc gcgcgagcga tcctcattgc gtgaacacgg acacgatgat cgccagccac
      241 agcgcaccta cgccgcccaa aaatgcgtga cgtgcgagac gcaggcggga ttcatcgtcg
      301 gggtgttttg tgggagacgt ggcgagccag ggcaccgaac cgaggcacgc gaaaccggcg
      361 agtgccagca gggcgacgga gacatcgcca gagcgccaat gcgagccctc gtggataccc
      421 cagtaaccga gaaacacgat accgatggaa aacaccgtcg atgcggctga actgagcgcc
      481 tgaacggatc ccgctggaaa ttgcatgaca tgcctcctga cacgcgtgaa agaacgcgag
      541 gtgccgccat cataggtgaa acggatcggg ggaaagaaga tgctacaagg tcgagcgcga
      601 gcacgagcgc tggcgtttgg aagcggcgca tccggtcagg ctcagccatt gtcttcgcgt
      661 ggcgtgttct cgttctttat tttcgctagt gattttcgct cgcgccacgg gcagaaccaa
      721 ccccaaagcg cgcgcaagaa acctatccgc tatccctctt gcgagccttg aacgtcgcga
      781 cgcggcgcct cggactctgc ctctaccgtg accttctccc gtgtcatcgt cttcacccgg
      841 ttttgaataa accgttgccc ggacacgacg atataaaacg ccagcggtgt gaacaccagc
      901 cccagcacgg tcgccgtaat tgcaccgccg aacacgccgg tcccgatcga tcgccggctc
      961 tccgccccgg cgccgctgga cacaagcaaa ggcacgacgc ccagcaaaaa cgccgccgat
     1021 gtcatcacga tcggccggaa gcgcgcactt gccgcggcga caattgcgtc cttcaacggc
     1081 gtgccatcgg cggatagcgt acgcgcgaac tgcacgatca ggatcgcgtt tttcgccgat
     1141 aacccgatca ccgtaatcat cccgaccttg aaatagacat cgttcggcat gccgcgcagg
     1201 agcatcgcga tcacggcgcc aatcacgccc agcgggacga tcgtcagcac tgcgagcggg
     1261 atggtccagc tctcgtaaag cgccgcgagc gccatgaaca cggccagtag cgacaatcca
     1321 atcaggatcg gtgtcaggcg ggcggcacgc gtctcttcaa gcgccgagtc ggtccagtcg
     1381 taacccacgc ccaccggcag cgcttgcgcg agccgttcca tctcggccat cgccgcgccg
     1441 gagctcgtgc cgtcggcggg acggccgctc acatcgagtg aaggagaacc gttatagcgc
     1501 gtgaggacgg tcggtccg
//
LOCUS       DATGBK010000456         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213831, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000456 DATGBK010000000
VERSION     DATGBK010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213831"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..534
                     /locus_tag="VKJ77_06575"
     CDS             <1..534
                     /locus_tag="VKJ77_06575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HMC44971.1"
                     /translation="KPGDLFVHRNIANLFSPDDDNTMSVLEYAVNVLKVDDVIVCGHY
                     GCGGVRASLLPLSDALPHVNRRIAPLCALARAHSSELDAIGTMDSRIDRLAELSVLEQ
                     VSALRDTPIVRDAERPPRVHGWIFGLRDGRIKVLSSGDPADADTGGAPAGSSNAATKA
                     AEPALGAAQRVIETVSR"
     gene            625..>1689
                     /locus_tag="VKJ77_06580"
     CDS             625..>1689
                     /locus_tag="VKJ77_06580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HMC44972.1"
                     /translation="MTLRETFATFPRDLFAGTVVFLVAMPLCLGIANASGVEPFAGLL
                     SGIIGGLIVALLSGSHLSVSGPAAGLVVIVVDGIAKLGSFSTFLMAVMLAGVIQFGFG
                     MLKAGRFAAYVPSSVIKGMLAAIGLLLIIKQVPLAAGFANGGAQVAAQLPGTITTPFG
                     AMSLAACAVAVVSIAILAGWETKAMRRFALVRAVPAPLAVVMLGIVITLALDYAAPGF
                     APPAEHRVSLPSLASFAALNAAFDWPNFEQLVNPDVWRLAMTLAIVASLETLLSLEAV
                     EQIDPKKLTAHPDRELKAQGIGNMMAGAIGALPITSVIVRSSANVHAGAQSRWSAVVH
                     GLLLLASVFALTAVINLIPLA"
BASE COUNT          274 a          548 c          521 g          346 t
ORIGIN      
        1 aagcccggcg atttgttcgt ccatcgcaac atcgcgaacc tcttttcacc ggacgatgac
       61 aacaccatga gcgtccttga atacgcggtg aacgtcctga aagtggacga tgtgatcgtg
      121 tgcggacact acggctgcgg cggcgtgaga gcgtcgttgc tgccgttgtc cgacgccctg
      181 ccccacgtca accgccgcat tgccccgcta tgcgcactgg cgcgtgcgca tagcagcgaa
      241 ctcgacgcga tcggcacgat ggattcacgc atcgaccggc tggcggaact gagcgtgctc
      301 gaacaagtga gcgcgctacg cgacaccccc atcgtgcgcg acgccgagcg tccaccgcgc
      361 gttcacggct ggatcttcgg tctgcgcgat ggccgcatca aggtgctttc gtctggagac
      421 cccgccgatg cagacaccgg gggagcgccc gccggctctt caaatgcagc gacgaaagcg
      481 gcagaacctg cacttggcgc agcccagcgc gtgatcgaaa ccgtcagccg ctagtcacac
      541 aagccgctca atcccgcgtt taaaaccttc accatgcgat gccttcccgg catcgcatgg
      601 cccaactcgc gcccaaaaaa gctcatgaca ctacgtgaaa cgtttgcaac cttcccgcgc
      661 gatctgttcg cgggcactgt cgtctttctt gtcgcgatgc cgctatgtct cggcatcgct
      721 aacgcatccg gcgtcgaacc gttcgccggc ttgttgtcgg gcatcattgg cgggctgatc
      781 gtcgcgctgc tgagtggctc acacctgagc gtgagcgggc cggcggcggg actggtcgtc
      841 atcgtcgtgg atggcattgc caagctcggc agtttttcga ccttcctgat ggccgtgatg
      901 ctcgcgggcg tgatccagtt cggtttcggc atgctgaagg ccggacgctt cgcggcatac
      961 gtgccgtcgt cggtcatcaa aggcatgctt gcggccattg gcttgttgct gatcatcaag
     1021 caggtgccgc ttgctgccgg ttttgccaac ggcggcgctc aggttgcggc gcaattgccg
     1081 ggcacgatta cgacgccgtt cggcgcgatg tcgcttgccg cgtgcgcggt agccgtcgtg
     1141 tcgatcgcga ttctggccgg ctgggaaacg aaagcgatgc gccgcttcgc gctcgtacgc
     1201 gccgtgcccg cgccgctcgc cgttgtcatg ctcggcatcg tgatcacgct ggcgctcgat
     1261 tacgccgcgc cgggttttgc gcctccggcg gagcatcgtg tttcgctgcc gtcgttggct
     1321 tcgttcgccg cgttgaacgc cgcattcgac tggccgaact tcgagcaact cgttaatcca
     1381 gatgtctggc gcctcgcgat gacgcttgcc atcgtcgcaa gtttggagac gttgctgagt
     1441 ctcgaagccg tcgagcagat cgatccaaag aagctcaccg ctcatccgga ccgcgaactc
     1501 aaggcgcagg gtatcggcaa catgatggcg ggcgcgatcg gcgcgttgcc gatcacctcg
     1561 gtcatcgtgc gtagttccgc caatgtccac gcgggcgcgc agagccgctg gtccgctgtc
     1621 gtacacggac tcttgctgct cgcgagcgtg ttcgccctga cggccgtgat caacctgatt
     1681 ccgctcgcc
//
LOCUS       DATGBK010000457         3002 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_213836, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000457 DATGBK010000000
VERSION     DATGBK010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3002
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213836"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..613
                     /locus_tag="VKJ77_06585"
     CDS             104..613
                     /locus_tag="VKJ77_06585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HMC44973.1"
                     /translation="MSHISSGVEYALHCLLYLTDAPAGVGEASVRDLAELQGLSVDYV
                     AKLFTKLHKAGLTVATEGARGGFTLARPAERITVLDVVQAVDGPKPLFDCREIRARCA
                     IFGDTAPKWATSGTCSIHAVMLDAEKRMNEVLEAQTLASLAVRTVAKAPRTYHTDIVN
                     WIDNRATSR"
     gene            complement(659..1600)
                     /locus_tag="VKJ77_06590"
     CDS             complement(659..1600)
                     /locus_tag="VKJ77_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC44974.1"
                     /translation="METQRVEALWTHLYWLTILAQQGSYTRAATRLGVSKAAMSQRIA
                     ELERAAGVSLVQRTTRSVRLTEAGQRLVDQTRDQYEGIAQSFAGVRDSAGVARGELRV
                     TAPVAFARQQLVPHLSAFLRANPEVRVQLEVSDRISSLASEGFDLAIRHSAAAPETHV
                     AWTLCATRSVIVATRAYLRRRGTPASPQDLASHDCLFYPRAQEAPAWTFERATGRKTA
                     AERVTVPINGPFSANNSETLRDAALDDLGIALLPDFSAQAALRAGQLIKVLPEWQPKG
                     GFAEQLYIVRPYASHVPRAVTAFVSYLRKTFESGFSD"
     gene            1709..>3002
                     /locus_tag="VKJ77_06595"
     CDS             1709..>3002
                     /locus_tag="VKJ77_06595"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018478 - malonate-semialdehyde
                     dehydrogenase (acetylating) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HMC44975.1"
                     /translation="MQSFSDRADVGHFIQGRRVPGTGTRTQPIFNPATGKEARTLHLG
                     DVADVDAAVAGAKKAFVAWSETPPIRRARVMLRFLELMNKHRDELAAIITAEHGKVFS
                     DAQGEVSRGIDVIEFACGIPQLLKGDFTEQVSTGIDNWTTRQALGVVAGITPFNFPCM
                     VPCWMFPVAIAAGNAFVLKPSERDPSAALFMAGLLQEAGLPDGVFSVVQGDKVVVDAL
                     LVHPDVKAISFVGSTPIANYIYQTGAQHGKRVQALGGAKNHMVVMPDADIDQAIDALV
                     GAGYGSAGERCMAISVAVLVGDVADKLIPRLAERARTLIVKNGMEADAEMGPIVTRQA
                     LERIEGYIALGVEEGASLVVDGRGLKVPGHEEGFFTGGTLFDHVTPEMRIYKEEIFGP
                     VLACVRVKDFTEAVDLINAHEFGNGVACYTRDGHIAREF"
BASE COUNT          558 a          830 c          996 g          618 t
ORIGIN      
        1 agcgcgtagg ggctaaatta gacgaggcgg cccgattgac gttgctcgtc gtcggctgat
       61 tgcatagaat gtggaaacta ggatttgttg agtcggagat aagatgagcc acatcagttc
      121 gggcgtcgaa tacgcgttgc actgtctttt gtatttaacc gacgcgcccg ctggcgtggg
      181 cgaggcgagt gtgcgtgacc tggccgagct gcaagggtta tcggttgatt acgtcgccaa
      241 gctcttcacg aagcttcata aggcggggtt gaccgtcgct acggagggcg cgcgcggggg
      301 atttacgctc gcgcgaccgg ctgagcggat caccgtgctt gacgttgtgc aggctgtgga
      361 cggtccaaag ccgctttttg attgccgcga aattcgtgca cgctgtgcaa tcttcgggga
      421 caccgcgccc aaatgggcga caagcggcac gtgctctatt cacgctgtga tgctggacgc
      481 agagaagcgc atgaacgagg tacttgaggc acagacgctc gcgagtctgg cggtgcggac
      541 ggtcgccaaa gcgccgcgca cttaccacac cgatatcgtc aactggatcg acaatcgggc
      601 gacgagccgt taactcggca cggaatgagt gagcgggacg gcttttcggg ctcggaacct
      661 aatccgagaa accgctttcg aacgtcttgc gcaggtagga gacaaacgct gtcaccgcgc
      721 gcggcacatg cgacgcgtaa ggcctgacga tataaagctg ttcagcgaac ccgcctttgg
      781 gttgccactc cgggagtacc ttgatcaact gcccggcgcg cagcgcggct tgcgcgctga
      841 aatcgggcag tagcgcaatc ccgagatcgt cgagtgcggc gtcgcgcagg gtctcgctat
      901 tgttcgcgga aaacggcccg ttgatcggca cggtcacgcg ctcggccgcg gtcttgcgcc
      961 ccgtcgcgcg ttcgaatgtc caggcgggcg cctcttgcgc acgcggataa aacaggcagt
     1021 catgcgaggc cagatcctgg ggggaagcgg gcgtgccgcg ccggcgcagg tacgcgcgtg
     1081 tagccacaat caccgagcgc gtcgcgcaca acgtccaggc cacatgtgtt tccggcgcgg
     1141 cggcgctgtg gcggatggcg agatcgaaac cctcgctggc aagtgaactg atgcggtccg
     1201 acacttcgag ctgcacgcga acttccggat tcgcccgcag aaaggccgac agatgtggca
     1261 cgagttgctg ccgcgcgaac gccaccgggg ctgtgacgcg cagctctccg cgagcgacac
     1321 ccgccgaatc acgcacgccc gcgaaacttt gcgcaatccc ctcatattga tcgcgggttt
     1381 gatcgaccag acgctgcccc gcctctgtca gccgaacgct gcgcgttgtg cgctgcacca
     1441 gcgaaacccc cgctgcgcgc tccagctcgg caattcgctg gctcatggct gccttgctca
     1501 cgcccagccg cgtggcggcg cgcgtgtagc tgccttgctg cgcgagaatc gtcagccaat
     1561 agaggtgggt ccagagcgcc tcgacgcgtt gcgtttccat atcttcattg ttcaccatag
     1621 aaaacaatca ttttaatcat agcgcctttg cagacacgtc tgatgttctt acactctgaa
     1681 gactcccatc tcattcaggt gtcacatcat gcaaagcttc agcgatcgcg cggacgtcgg
     1741 ccactttatc cagggccgcc gtgttcccgg cacgggcacg cgtacccagc cgattttcaa
     1801 tcccgcgacc ggcaaggaag cacgcacgct gcatctgggt gatgtcgccg atgtggacgc
     1861 cgccgtcgcc ggcgcgaaga aagcgtttgt ggcctggagt gagacgccgc ctatccggcg
     1921 cgcacgggtc atgctgcgtt ttctggaact gatgaataaa caccgtgacg agctcgccgc
     1981 gatcatcacc gccgagcacg gcaaggtgtt cagcgacgcg cagggcgaag tgtcgcgggg
     2041 tattgacgta atcgaattcg cttgcggcat tccgcagctt ttgaagggtg actttaccga
     2101 gcaggtatcg acgggtatcg acaactggac gacgcgtcag gcgcttggcg tggtagcagg
     2161 cattacgccg ttcaactttc cgtgcatggt gccgtgctgg atgttcccgg ttgctatcgc
     2221 tgcggggaat gccttcgtgc tgaagccgag cgaacgtgat ccgtcggctg cgttgttcat
     2281 ggcgggcttg ttgcaggaag ctgggctgcc cgacggtgtg ttcagtgtgg tgcaaggcga
     2341 caaggtcgtg gtcgatgcgt tgctcgtgca tcccgatgtg aaggccatca gttttgtggg
     2401 ttcaacgccg atcgcgaatt acatttatca gacgggtgcg cagcacggca agcgcgtgca
     2461 ggcgcttggc ggcgcgaaga atcacatggt cgtgatgccg gatgcggata tcgatcaggc
     2521 tatcgatgca ctggttggcg cgggttatgg ctcggcaggc gagcgttgca tggcgatttc
     2581 ggtggctgtg ctggtcggtg atgtggccga caaactgatt ccgcggctgg cagagcgggc
     2641 acgcacgctg atcgtgaaga acggcatgga ggccgatgcc gaaatgggcc cgatcgtcac
     2701 gcgtcaggcg ttggagcgca ttgagggtta catcgctctg ggtgttgaag agggtgcttc
     2761 gctggttgtc gatggacgtg gtttgaaggt gccggggcat gaagaaggct tctttacggg
     2821 cggtacgttg ttcgatcacg tgacgcctga gatgcgcatt tataaggaag agattttcgg
     2881 gccggtgctg gcgtgtgtgc gggtgaagga ctttaccgaa gcggttgatc tgatcaatgc
     2941 gcatgagttc ggcaatgggg ttgcttgtta tacgcgtgat gggcatattg cgcgcgagtt
     3001 cg
//
LOCUS       DATGBK010000458         4495 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_236988, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000458 DATGBK010000000
VERSION     DATGBK010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4495
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236988"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..827
                     /locus_tag="VKJ77_06600"
     CDS             <1..827
                     /locus_tag="VKJ77_06600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44976.1"
                     /translation="VNLTQVVTIVIVGIGMTLVVATGGIDLSVGASMAIAGSLAPMIF
                     MNVAGPFGIALAFVLPVLAAALCGVFNGFLVTRLSVQPIVATLVLFIAGRGIAQVFTD
                     GSLQAFDNPAFQWIALGRVAGVPAQVFLMLALVAVFAWIVRKTLFGQYLLVTGGNERA
                     AYLSGIPTARVKMIAYTLCAGLAGLAGLISISVNSSSDANVIGLGSELDAIAAVAVGG
                     TALTGGRAYIVGTLIGALIIQLLRYTLLAHGIPDAAALVVKAGIIIAAVYVQRRQR"
     gene            840..1796
                     /locus_tag="VKJ77_06605"
     CDS             840..1796
                     /locus_tag="VKJ77_06605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC44977.1"
                     /translation="MKKNLPILLALAALLLLGVLRYDHFASAYNINSFWRYNSMFALI
                     SVGMAFVIITGGIDLSVGTVAALASVVAALASPYGGLVAVLAGAGAGLAIGLLNGLVI
                     THMRILPFIVTLATSLGAHGLALLLGHNDAVSIAPTSSFGNFGQGDVWGLPIPGIVAA
                     VAAVLGWLALRSTRFGRHALAIGGSEEASRLMGLNVDRTLVMVYALSGLLAGIAGAIL
                     AAQFGAGQPNEGVGWELFAISAVVLGGTLLTGGQGSIAMTIAGVALLGLVFNLLNFEN
                     GLGFISLSAYWQSVIRGVFLLLVIVLQARVLKKRVTVTKLAR"
     gene            1926..2528
                     /locus_tag="VKJ77_06610"
     CDS             1926..2528
                     /locus_tag="VKJ77_06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HMC44978.1"
                     /translation="MFDLFDDIPKPDIVWLPDWLDAPTASDTLAALLDEITWQQDSMN
                     TPAGKIPFPRLTGWQGDPGAVYVYSGIRNVPKPWTPTVLLLKTKAEAAAQTAFNSVLI
                     NRYRTGMDSMGWHADKERELGLEPVIASVSLGTTRTFDFRHAKTRQTHTLQLTHGSLL
                     IMRGRTQLDWAHRVPKEPEARGERINLTFRYVDPSATARK"
     gene            complement(2531..2923)
                     /locus_tag="VKJ77_06615"
     CDS             complement(2531..2923)
                     /locus_tag="VKJ77_06615"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009771635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC44979.1"
                     /translation="MTLPTFSMVDTAPTPVGPFSHAAEADGWVFLTGQMPTDPADDTQ
                     PLPEGVEAQTRRVMDNLILVLEGIGLSLDNVVSVRIFLTEFKRDYAAMNEVYKGYFLP
                     KPLPARTCIGVTGLARDALVEIDFVAKR"
     gene            3119..4351
                     /locus_tag="VKJ77_06620"
     CDS             3119..4351
                     /locus_tag="VKJ77_06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2252 domain-containing protein"
                     /protein_id="HMC44980.1"
                     /translation="MPKKKKFKLPSPNDRQALLSERRNMKMAESAHAYVRGSTTKFYE
                     WLDGIEGHSLPEGPAIWICGDCHTGNLGPIANADGRVEIQIRDLDQTVIGNPAHDIIR
                     LGLSLAMAARGSDLPGVTTARMMEALAQGYEHAFDRSSHRSAKDTKPEEVRVMMKEAV
                     RRTWQQLAVERIEDIEPSIPLGKRFWPLDKTERAEIDALFQQREIADIATTLRKNADE
                     ENVTVIDAAYWVKGCSSLGRLRYAVLLDIDGGAIEGDDLCLIDIKEGAKAAAPRYTDA
                     DAAKRMPRDNAERIVEGARHLTPWLGERMRSARLNDRSVVIRELLPQDMKLTVEQLTQ
                     DEATKAARFLAMVVGKAHARQMDAAQRRAWLSELRRAKSKSLDAPSWLWKSIVELVSS
                     HEGGYLEHCRRYALASTS"
BASE COUNT          922 a         1265 c         1409 g          899 t
ORIGIN      
        1 acgtcaacct gacgcaagtg gtgacgatcg tgatcgtcgg cattgggatg acgctggtcg
       61 tggcaacggg cggtatcgat ttatcggtgg gcgcttcaat ggcgattgcc ggttcgctcg
      121 cgccgatgat cttcatgaac gtggccggtc cgttcggcat tgcattagcc tttgtcttgc
      181 ccgttttggc cgccgctctc tgcggcgtct tcaacggctt cctcgtcaca aggctctctg
      241 tgcagccgat tgtcgctacg ctggtgctgt tcatcgcagg gcgcggcatt gcgcaggtgt
      301 tcaccgatgg cagcctgcaa gcattcgaca accccgcttt ccagtggatc gcactgggcc
      361 gcgtggcggg cgtgccggcg caggtgttcc tgatgctcgc gctcgtcgcc gtgttcgcgt
      421 ggatcgtgcg caagacattg ttcggccagt acctgctcgt cacgggcggc aacgagcgcg
      481 ctgcgtacct gagcggcatt ccaacggcgc gcgtgaagat gatcgcgtac accttgtgcg
      541 cggggttggc ggggctggcg gggttgatat cgatctccgt gaattcgtcg tcggacgcca
      601 acgtgatcgg cctgggctcc gagctcgatg ctattgccgc agtcgccgta ggcggcacgg
      661 cgttgacggg tggcagggcg tacatagtag ggacgctgat tggcgcgctg atcatccagt
      721 tgctgcgata cacgctgctc gcccacggca ttcccgatgc agccgcgctc gtggtgaaag
      781 ccggcatcat catcgccgcc gtgtacgtac agcggcgtca gcgataggga gatatagaca
      841 tgaaaaagaa ccttcccatt ctgttggcgc tagcggcgtt gctcctgctc ggcgtgcttc
      901 gatacgacca ctttgcatcg gcctacaaca tcaattcatt ctggcgatac aactcgatgt
      961 tcgcgttgat atcggtgggc atggcgtttg tgatcatcac gggcgggata gacctgtccg
     1021 tggggacggt ggcggcgctg gccagcgtgg tagccgcgtt ggcgagcccg tatggcggtc
     1081 tggtcgcggt gctcgcgggt gcgggcgcgg gactcgccat cggcttgttg aacggcctgg
     1141 tcatcacgca catgcggatc ctgcctttta ttgtcacgtt ggcgacgagt ctgggggcgc
     1201 atggcctggc gctgctgttg ggacataacg atgccgtatc gattgcgccc acctccagtt
     1261 tcggcaactt cggacaaggg gatgtatggg gtttgccgat cccgggaatc gtggcggcag
     1321 tggcggcggt gttgggatgg ctggcattga gaagcacgcg gttcggacga catgcgctgg
     1381 caatcggcgg cagtgaagaa gcctcacgat tgatgggtct gaatgtagac aggacgctgg
     1441 tcatggtcta tgcactgagc ggcttgctgg ccggcatagc gggggcaata ttggctgcgc
     1501 aattcggcgc aggccagccg aacgaaggcg tgggctggga gttgttcgcc atatcggcgg
     1561 tggtgttggg ggggacgtta ttgaccggcg gacaaggatc gattgcgatg accattgccg
     1621 gcgttgcgtt gctgggtctg gtgtttaatc ttctgaactt tgagaatggt ctgggcttta
     1681 tcagcctgtc agcgtattgg caatcggtga tacgtggcgt gttcttgttg ctggtgatcg
     1741 tgctgcaagc gcgcgtgctg aagaagcggg tgacggtgac aaagctggct cgttgagggg
     1801 gcaagccgcc acacaacgtg gcggcttata aaaataggtg cgcacgtttc aggaaagaga
     1861 atctgctaag ttactaaaaa tgtgacaccg atctagcaga tagcccgaag gcgaaaatta
     1921 ccgccatgtt cgacctcttc gacgatatcc ccaagcctga catcgtatgg ctgcctgact
     1981 ggctggacgc accgacggcg tcggacacgt tagccgcttt actcgatgaa atcacctggc
     2041 agcaggactc aatgaacacg cccgcaggta agatcccctt cccgcgcttg accgggtggc
     2101 agggggaccc tggcgcggtc tacgtgtact ccggcattcg caacgttccg aagccgtgga
     2161 cgccgacggt tttattgttg aaaacaaaag ccgaagccgc cgctcaaact gcattcaaca
     2221 gtgtcctgat caaccgctac cgcacgggca tggacagcat gggttggcat gccgataagg
     2281 aacgagaact cggactagaa ccggtgattg cgtcggtgag tctgggcacg acgcggacct
     2341 tcgactttcg ccacgccaaa acgcgccaga cccatacgct tcaactcacg cacggcagct
     2401 tgctcatcat gcgcggacgc acgcaactgg actgggcgca tagagtgccg aaagaacccg
     2461 aagcgcgcgg cgaacgaatt aacctcacgt ttcgatacgt ggatccatcg gcgacggcac
     2521 gcaaataaac tcaacgcttg gcgacgaaat caatctccac gagcgcatcg cgcgccaacc
     2581 ccgtcacgcc aatacacgtc ctcgccggca acggcttagg cagaaagtag cccttataaa
     2641 cttcgttcat cgcggcgtaa tcgcgcttga attcggtcag aaaaatccgc acgctgacca
     2701 cgttatccag cgacaagcca atcccttcca gcacaagaat caggttatcc atcacccggc
     2761 gcgtttgggc ttccacgcct tcgggcaagg gctgggtgtc atcggcggga tcggtcggca
     2821 tttgtcccgt gaggaacacc caaccatccg cttcggccgc gtgagaaaaa ggaccgaccg
     2881 gcgtgggcgc ggtatcgacc atggaaaaag tgggtagcgt cattgtgtgt ccgtaaatag
     2941 gtcaggccga taccgtaacg gatcaaaaat cctggcgccg agcctgacga tcactacgct
     3001 cgacggcttt gctgcactat caaaaccagc aacaagcatc cgcccgcaaa cacccttcat
     3061 tttcattaca tcgcgacggc atgcggcttg ctccggtcaa gcaccacagg acgatcccat
     3121 gcccaagaaa aagaaattca agcttcccag ccccaacgat cgtcaggcgc tcctctctga
     3181 gcgccgcaac atgaaaatgg ccgaatccgc gcatgcctac gtgcgcggga gcactaccaa
     3241 gttctatgaa tggctcgacg gtattgaagg ccattcgctc cccgaaggcc ccgccatctg
     3301 gatctgtgga gactgccaca cgggcaatct cggccccatc gccaacgccg atggccgcgt
     3361 ggagatccag atccgcgatc tcgaccagac cgtgatcggg aatccggcgc acgacatcat
     3421 ccggctgggg ttatcgctgg caatggccgc gcgcggctcc gacctgcccg gcgtcacgac
     3481 agcacgcatg atggaagcgc tcgcgcaggg ctatgaacat gccttcgatc gttccagcca
     3541 tcgctccgcc aaggacacga aacccgaaga ggtacgcgtg atgatgaagg aagcggtgcg
     3601 ccgcacgtgg cagcaactgg cggtcgaacg cattgaagac attgaaccga gcattccgct
     3661 cggcaagcgt ttctggccgc tcgacaagac cgagcgcgct gaaatagacg cgttgttcca
     3721 gcagcgcgag attgccgata tcgctaccac tttgcgcaag aacgccgacg aagaaaacgt
     3781 caccgtgatc gatgccgcct attgggtgaa gggttgcagc tcgctagggc ggttgcgata
     3841 cgcggtgttg ctggacatcg acggtggcgc gatagaaggc gacgatcttt gcctgatcga
     3901 tatcaaggaa ggcgcgaagg ccgccgcacc gcgttatacg gatgcggacg cggcgaagcg
     3961 catgccgcgc gataacgccg aacgtatcgt ggaaggagcg cggcatctga ctccgtggct
     4021 cggagagcgg atgcgctcgg cgcgtttgaa cgaccggtcg gtggtgattc gcgagttatt
     4081 gcctcaggac atgaagctga cggtcgagca attgacgcag gatgaagcga cgaaggcagc
     4141 gcgcttcctg gccatggtcg ttggcaaagc gcacgcgcgg cagatggatg cggcacagcg
     4201 gcgcgcgtgg ttatcggagt tgcggcgtgc gaagtcgaaa tcgctcgatg cgccgtcgtg
     4261 gctatggaaa agcattgtgg aattggtgag cagccacgaa ggcggttatc tcgaacattg
     4321 ccggcgatat gcgctggcgt cgacttcata gcgaaacctg cgttcatcga ctaacaaaaa
     4381 aagaagggct gttccaacta acgttgaaca gcccttcttt gtagatactg cggtgatggt
     4441 tggcgaccga tcgaagaatc ggtcaacgct caatagccgt agcctcggcg atcgc
//
LOCUS       DATGBK010000459         1613 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_283248, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000459 DATGBK010000000
VERSION     DATGBK010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283248"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(182..892)
                     /locus_tag="VKJ77_06625"
     CDS             complement(182..892)
                     /locus_tag="VKJ77_06625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013435336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44981.1"
                     /translation="MTQLLQVDALEASYGSSQALFGVSFDVDEGQFVTLLGRNGMGKS
                     TTVKSITGLLRPGRGAIRFNREPIHARASHLIARAGVGLVPEGRHIFPTLTVRENLIA
                     TAHNRQRSIEPWTLARIYGFFPRLQERERNLGANLSGGEQQMLAIGRALMTNPRLLIL
                     DEATEGLAPLIREEIWRCLAELKKTGLAIICIDKNLSAQLALADRHYLLAKGQVAWSG
                     SSTELRAQADNLRSELSI"
     gene            complement(889..>1613)
                     /locus_tag="VKJ77_06630"
     CDS             complement(889..>1613)
                     /locus_tag="VKJ77_06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017234235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC44982.1"
                     /translation="IAPGEIHAIIGPNGAGKSTLIGQLSGELQPDEGRILFDDRDITR
                     LSVDKRARLGLARSYQITSVLPGFTALENVMLAVNALRSSRFGCWQPMAAARAIAAPA
                     RVLLDQVGLGDRAQVAVADMAHGEHRQLELAMALAGHPTLLLLDEPMAGMSQSESAQM
                     TAQLRALKGSYAMLLVEHDMDAVFALADRITVLVYGRAIACGTPAEIRADAAVRAAYL
                     GDDDTADETMNETTLAAPEEQP"
BASE COUNT          294 a          507 c          513 g          299 t
ORIGIN      
        1 gtcaagcacg accggacacg ttgacttcga ctcggcggcc aaagccgcat aaatccgcat
       61 ctcggcgtcg aaatccgcga cggaggcgcg tgcgttgtac tggaccgcgc gctcggtaag
      121 gttggcgaag gtcaggtcga atgccatgag agggaggcct cggaatacgg gaatagggtg
      181 gctagatgct cagctcgctg cgaaggttgt cggcttgagc gcgcagttcc gtcgacgaac
      241 cgctccatgc gacctggccc ttcgccagca aataatgccg gtcggcaagc gccagttgcg
      301 cggagagatt cttgtcgatg cagataatag ccaatcccgt cttcttgagc tcggccaggc
      361 atcgccagat ctcttcgcgg atcagcgggg cgagtccctc ggtcgcttcg tcgaggatca
      421 gcaggcgcgg gttggtcatc aaggcccggc cgatcgccaa catttgctgt tcgccaccgg
      481 agagattcgc gcccaagtta cgctcgcgtt cctgcagtcg cggaaagaac ccgtagatgc
      541 gcgcaagcgt ccatggctcg attgaacgct gacggttatg cgccgtggcg atcaggtttt
      601 cgcgtaccgt cagcgtcggg aagatatgcc gtccctccgg cacgagaccg acgcccgccc
      661 gcgcgatcag atgcgatgcg cgggcatgga ttggctcgcg gttgaagcgg atggccccgc
      721 gaccgggccg cagcagtcct gtgatggatt tgaccgtggt cgatttaccc atgccattgc
      781 gtccgagcaa ggtcacgaac tgtccctcgt caacgtcgaa gctgacgccg aacaacgcct
      841 ggctcgatcc ataggacgct tccagcgcgt ctacttgcag tagctgcgtc atggctgttc
      901 ctccggtgca gcgagcgtgg tttcgttcat ggtttcgtcc gcagtgtcgt catcccccag
      961 atacgccgca cgcacggcag cgtcggcacg aatctcggca ggcgtgccgc acgcaattgc
     1021 tcgcccgtag acgagcacag tgatgcgatc cgccagcgcg aatacggcat ccatatcgtg
     1081 ctcgacgagc agcatcgcat agctgccctt cagcgcccgg agctgcgccg tcatctgcgc
     1141 agactcggac tggctcatgc cggccatcgg ttcatccaga agcagcagcg tcggatggcc
     1201 cgccagcgcc atcgcaagtt cgagctggcg atgttcgcca tgcgccatat ccgccacggc
     1261 tacttgtgcg cgatcgccga gccccacttg gtcgagcagc actcgcgccg gcgcggcaat
     1321 ggcgcgtgcg gccgccatgg gctgccagca accgaagcgt gaactacgga gcgcgttcac
     1381 ggccagcatg acgttttcga gtgcagtgaa cccaggcagc accgacgtga tctgatacga
     1441 gcgcgcgagg ccgagccggg cgcgtttgtc caccgagagc cgggtgatgt cgcggtcatc
     1501 gaagagaatg cggccttcgt caggctgcag ttcacctgaa agctgtccga tcaacgtgct
     1561 tttgcccgcg ccgttcggac cgatgatcgc gtggatctcg cccggggcga tag
//
LOCUS       DATGBK010000460         1871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_97956, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000460 DATGBK010000000
VERSION     DATGBK010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97956"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1509)
                     /locus_tag="VKJ77_06635"
     CDS             complement(<1..1509)
                     /locus_tag="VKJ77_06635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HMC44983.1"
                     /translation="MMHTETATLTADELDVFECSLDGVNQIEASAGTGKTWNICALYV
                     RLLLEKKLAADAILVVTFTKAATAELHERIRSRLVQIAHAMETGDTAGDAFLDRLFET
                     TLERVEPDEALKRIKIALHTFDQAAIHTIHAFCQRALQEAPFAATMPFEFELEADDSA
                     LRFEMAADFWRERVEPAAARDASFAAWLVSKGAGPASLDAQLSRRLKKPLATLRWGES
                     EVAHREDAQALFDTACAVWHAERDTIVPLLIDAEAKLSKTTHKRTLIDAAIAAWSDYF
                     ADNDCHAAPPKEALKLTASALKKGTKVKNEPPSHVFFDHAETLAAAAAAAEAAQRAAW
                     LGIVREWLDYAPLELAVRKRTRRVVSFDDLLSNLYQALDANPWLADALRARYPAALID
                     EFQDTDPLQFAIFNSIFAPQGPLFLVGDPKQAIYSFRAADLHTYLTARKRASARYTLA
                     VNQRSTEPIIDACNRIFSANPAAFILDGLTYQPVRAGTRERKPFNDNTASAAY"
     gene            complement(1506..>1871)
                     /locus_tag="VKJ77_06640"
     CDS             complement(1506..>1871)
                     /locus_tag="VKJ77_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HMC44984.1"
                     /translation="YCAALPDGPRRTVWHGRGAQSSGFELTPVDDPHAHLATLAALYR
                     AGQRLPLRFFPKSAWTWVKESESKAQGVWVSDRTRGESDDPALRIAFRGAELRLDETF
                     ATLARTVFEPLIQHMRSDA"
BASE COUNT          339 a          599 c          579 g          354 t
ORIGIN      
        1 atacgccgcc gacgctgtgt tgtcgttgaa cggcttgcgc tcgcgcgtgc ctgcacgcac
       61 cggctggtat gtcaatccat cgaggatgaa cgccgccgga ttcgcgctga aaatgcggtt
      121 gcaggcgtcg atgatcggct cagtcgagcg ctggttaacc gcaagcgtat atctcgccga
      181 cgcacgcttg cgcgccgtca aatacgtatg caggtcggca gcacgaaaac tgtagatggc
      241 ctgcttcgga tcaccgacca gaaacaacgg cccttgcggc gcgaagatgc tgttgaagat
      301 ggcaaactgc aacgggtccg tgtcctggaa ctcatcgatc aatgcagccg gataacgtgc
      361 ccgaagtgca tcggcaagcc acggattggc gtcgagcgcc tgatacaggt tggacagcaa
      421 gtcgtcgaag gacaccacgc gccttgtccg cttgcggacc gccagttcca gcggcgcgta
      481 gtcgagccac tcgcgcacga tgccaagcca tgccgcgcgc tgcgccgctt ccgcggcagc
      541 agcagccgcg gcaagcgtct cggcgtgatc gaagaaaaca tgcgacgggg gctcgttctt
      601 caccttcgtg cctttcttca acgcgctcgc cgtgagcttc agcgcttctt tcggcggtgc
      661 ggcgtgacag tcgttgtcag cgaaatagtc ggaccacgcg gcaatcgccg cgtcgatcag
      721 cgtgcgcttg tgcgtggtct tgctgagctt cgcttcggcg tcgatcagca atggcacgat
      781 ggtgtcacgt tcggcgtgcc acaccgcgca cgccgtatcg aacaacgctt gcgcgtcctc
      841 gcgatgggcg acctccgact ccccccagcg caacgtggca agcggttttt tcagccggcg
      901 tgaaagctgc gcgtcgagcg atgccggtcc cgcgcccttg ctcacgagcc acgccgcgaa
      961 cgatgcatcc ctcgcggcgg ccggctcgac tcgttcacgc cagaagtccg ctgccatctc
     1021 gaagcgcaac gcgctgtcgt cggcttccag ttcgaactcg aacggcatgg ttgcagcgaa
     1081 cggcgcctct tgcagcgcgc gctggcagaa cgcgtggatc gtgtggatgg cggcctgatc
     1141 gaaggtatgc agcgcgatct tgatacgctt gagcgcttca tcaggttcga cgcgttcaag
     1201 cgtagtctcg aacaggcgat cgaggaacgc gtcgcccgcg gtgtcaccag tttccatcgc
     1261 gtgcgcgatc tggacgagcc gcgagcggat gcgctcatgc agttcagccg tggccgcttt
     1321 cgtgaacgtg acgacaagga tcgcgtcggc agcaagcttc ttttccagca gaagccgaac
     1381 gtagagcgcg caaatgttcc acgtcttccc cgttcccgcc gatgcttcga tctggttcac
     1441 gccatcgagc gaacattcga agacgtcgag ttcgtcggcc gttagtgtgg ctgtttcggt
     1501 atgcatcatg cgtcgctccg catgtgctgg atcaacggct cgaagacggt cctggccaac
     1561 gtggcgaagg tttcatcgag tctcagttca gcgccgcgaa acgcaatacg caacgcggga
     1621 tcgtccgact cgccgcgcgt cctgtccgac acccacacgc cctgagcctt ggactcgctc
     1681 tccttgaccc atgtccacgc gcttttcgga aagaaccgca gcggtaaccg ctgcccggcg
     1741 cgatacaacg cggcgagcgt cgcgaggtgc gcgtgaggat cgtcgacagg cgtcagttca
     1801 aagccgctcg attgcgcgcc gcgcccgtgc cacacagtgc gtcgcgggcc atcgggcaac
     1861 gcggcgcaat a
//
LOCUS       DATGBK010000461         2276 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_306464, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000461 DATGBK010000000
VERSION     DATGBK010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306464"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..979)
                     /locus_tag="VKJ77_06645"
     CDS             complement(176..979)
                     /locus_tag="VKJ77_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44985.1"
                     /translation="MSLQNIKQACGSAACALLCVCVTAQAQTASSAVTTPARIKDVAP
                     VGIVVTPGFTGDDPAAVRDALARKFTDSKTLSFTHRVEDLIGDALPKTLHDAALMDAK
                     LSRDLAFVVPAPYGIRYRSKVHVMMVDVDLSDSDHPNTIVLKKTITGPRGRKLVVAAE
                     AKQKGYIQNIDIIELDPVNKHNKTTVHGRFVLSPDAFSQEDGDLALVLICRVVPPYLT
                     QTKDHTDPSNEEPTDITTRTATLHANVGDIWLINREKGIVLAKGLHLVK"
     gene            1317..>2276
                     /locus_tag="VKJ77_06650"
     CDS             1317..>2276
                     /locus_tag="VKJ77_06650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016451390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HMC44986.1"
                     /translation="MSGPLKGIRVVEMVGLGPCPFAAMMLADMGAEVIRIDRQQTGGT
                     TPYPMQGTKFDVMARGRRSLALDLKQPEGRELALNLVAQADALIEGFRPGVMERLGLG
                     PDVCLERNPKLVYGRVTGWGQDGPLAKTAGHDLNYIAMSGMLHEIGRGDAPPVPPLNL
                     VGDFGGGGMMLAFGVLCALLETRGSGKGQVIDAAMVEGSALLGAMIYGYKAFGAWAGE
                     RGSSMLAGGAHFYNTYACADGKFVSVGAIEPQFYALLLKLCGIDDAAFDSQMDREQWP
                     SLKTKIAAVFATKSRQAWCELMEGTDVCFAPVLDMDEAPEHVHN"
BASE COUNT          432 a          608 c          736 g          500 t
ORIGIN      
        1 ccggcacccg tgaagtgtgc gctcgaggtc ttgggaatga tccgccagga acttcgtgcg
       61 ccgatgacgc aagcgaccga ccggctgcgc aaccagcttg gcgtcttgct gtcgagctag
      121 acgaaaatca gcgcggtgcc aggcgcgtgc gattcacgtg aagatgccgc cgcgcttatt
      181 tcaccaagtg cagtccctta gccagcacaa tgcccttttc gcggttgatc agccagatat
      241 cgccgacgtt cgcgtgcagc gttgccgtgc gcgtggtgat gtcggtgggc tcctcgttgc
      301 tcgggtccgt atggtccttg gtttgtgtca gataaggcgg taccacccga cagatcagca
      361 cgagcgcgag atcgccgtct tcttgggaaa acgcgtcagg agacagcacg aagcgcccat
      421 gcaccgtcgt tttgttgtgc ttgttgacgg gatccagttc gatgatatcg atgttctgta
      481 tatagccctt ctgtttcgct tcggcggcta ccaccagctt tcggccacgc ggtccggtaa
      541 tggtcttctt gaggacgatt gtgttgggat gatcgctgtc cgacagatcc acgtccacca
      601 tcatcacgtg gaccttcgac cgatagcgga ttccatacgg tgcgggcaca acgaacgcga
      661 gatcgcggct tagcttggcg tccatcaacg cggcgtcgtg cagcgtcttc ggcaaggcat
      721 cgccgatcag atcttctact cgatgcgtga acgagagcgt cttgctatcg gtgaatttgc
      781 gcgccagcgc gtccctgacg gcagccggat cgtcgccggt gaaaccgggc gtcaccacga
      841 tgccgaccgg cgctacgtct tttattcgtg cgggcgtagt gaccgcgctg ctggcggttt
      901 gagcctgggc agtcacacac acgcaaagaa gagcgcaagc ggcgcttccg cacgcttgtt
      961 tgatgttctg aagactcatt agcagactcc catggacatg atcgcggacc gcctggtctt
     1021 cgtgctgcaa gagcagcatt cgagtcaatt cattaccatt caattctatt caatggtacc
     1081 cggctagaaa agataaatgg gggacattgg cacggtatta aacgtaaggt gaggggcctg
     1141 ctccgtttga tgaccggggg aggtgtagag tttcttgaat cgaagggcat tagaaattca
     1201 ggcgctcaat agaaacgctg gtctcgaaca acctttccgt tagggaaaac caatatgaag
     1261 tctcccgcaa ttcatgtgtc gccgagccgg gattgtttat cgcgtgcgac gttgcgatga
     1321 gtgggccgct caaggggatt cgcgtggtcg agatggtcgg gctcggaccg tgtccgttcg
     1381 ccgccatgat gctcgccgac atgggtgccg aagtgatccg catagatcgt cagcagaccg
     1441 gcggcaccac gccctatccc atgcaaggca cgaaattcga tgtgatggcg cgcgggcgtc
     1501 gctcgctcgc gctggatctc aagcaaccgg aaggacgcga gctggcgctg aatcttgttg
     1561 ctcaggccga tgcgttgatc gaaggttttc gccctggcgt gatggagcgg cttggcctcg
     1621 ggccggacgt gtgcctggag cgcaatccga agcttgtgta cggccgtgtc acgggctggg
     1681 ggcaggatgg tccgctcgcc aagacggcag ggcacgatct gaattacatc gcgatgagcg
     1741 ggatgctgca cgagatcggc cgtggcgatg cgccgccggt gccgccgctg aatctggtcg
     1801 gtgactttgg tggtggcggc atgatgctcg cgttcggggt gttgtgtgcg ttgctggaaa
     1861 cgcgcgggtc gggcaagggc caggtaatcg atgccgcgat ggtcgaaggc tctgcactac
     1921 tgggcgcgat gatctacggt tacaaggcgt ttggcgcgtg ggcaggcgag cgaggctcga
     1981 gcatgcttgc cggcggcgcg catttctaca atacctatgc atgcgcggac ggcaaattcg
     2041 tgtccgttgg ggcgatcgaa ccgcagtttt atgctttgct gttgaagctc tgcggtatcg
     2101 acgatgcggc cttcgacagt cagatggatc gcgaacaatg gccgtcgttg aaaacgaaaa
     2161 tagcggccgt cttcgcgacg aaatcgcgac aggcgtggtg tgaattgatg gaaggcacgg
     2221 atgtctgctt tgcgcccgtg ctcgatatgg atgaggcgcc ggagcatgtg cataac
//
LOCUS       DATGBK010000462         3635 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_306473, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000462 DATGBK010000000
VERSION     DATGBK010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3635
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306473"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VKJ77_06655"
     CDS             <1..215
                     /locus_tag="VKJ77_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC44987.1"
                     /translation="IYRYYGALISIERSALDSSTQQERQALVAELDQIEESLNTLRMP
                     LAHADAFYVLREHVGFVRAHLSEASR"
     gene            563..1978
                     /locus_tag="VKJ77_06660"
     CDS             563..1978
                     /locus_tag="VKJ77_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfate exporter family transporter"
                     /protein_id="HMC44988.1"
                     /translation="MSDTPTTTPSYEAERQPERSSSGPFKTEDWWAVWIGLAIIVIAY
                     LLFASGTSIKWLAVAPAKWSSGAQAVTDLGHHLPNYIALFIVFAILFGIAVAALGQQV
                     ALFVPGFVVVFVVSALIFIAGAWTKSSTYNLEPPLIALALGLIVSNLTRLPAWLVPAL
                     RVEFYIKVGIVLLGATLPFTLLVWAGPVAVGQATVVSLVTFFVIFLVGRALGLDKRFA
                     AVLGVGGAVCGVSAAIAIAGAVRAKREQASVAITLVVVWAIVMVFALPFVSRALGLPT
                     GVAGAWIGTSEFADAAGIAAAQAYGDLAKHAGSAIAGAPEASLQAFTLMKVVGRDIWI
                     GIWAFVLAIVATTRWDRDEPGAVKTQTTAREIWTRFPKFVIGFLIASALVTWIGSHYT
                     LTEYRSVVTPAFVAPITALRTWAFTFCFLSIGLTTRLGSLSATGAKPFIAFTAGVAVN
                     VVIGYLLSVHVFGAYWASLGQ"
     gene            complement(2275..3546)
                     /locus_tag="VKJ77_06665"
     CDS             complement(2275..3546)
                     /locus_tag="VKJ77_06665"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HMC44989.1"
                     /translation="MSKVRHLEVRASQARRGWLKRVSALAAMSAMGSLAAARPAQAAS
                     AAASTASKAQTAEPLFAYVGTYTPNGLGIHRFQVDRNTGKLDALEPLRGIENPSCLVV
                     DRQQRFLFAVSEVKNYNGTKNGSVSAYAIEPGTGSLHLINTVNSQGAGPVYLSLHPNG
                     RFLLVANYNSGSIAVFPVASDGTLGDASSVQQPQAPAGAQHAAEGVPGSFAVSDHDGS
                     HAHNIVSSPDGRFVISTDLGVDRTYIWKFDETAGTLSPNDPPFVASSAGAGPRHVVFH
                     PSGRYLYEVTEEASTLVCYAYDSARGVLTQLQSVSTLPAAYQGTSFASEILLSHDGRF
                     IYVANRLHDTIVQFRVGTDGRLTRVGETPTGGDYPRVIKFDPSGRFLYSLNQRSDQIA
                     IFAVDAASGKLRFTGTYVAVGSPSDIAFATA"
BASE COUNT          660 a         1103 c         1132 g          740 t
ORIGIN      
        1 ggatctatcg gtattacggc gcgctgatct caatagagcg cagcgcgctg gacagctcga
       61 cgcagcagga gcgacaagcg ctcgtagcgg aactcgacca gatcgaggaa tccctcaata
      121 ccctgcggat gccactcgcg catgccgacg cgttttatgt acttcgcgaa cacgttgggt
      181 tcgtgcgcgc gcacctgagc gaagcgtcgc ggtagaaggt gcacgggtgg gactctggtt
      241 tcgttcgcgc cggggatggt cggcggcttc ggtcggagaa ccgtcggaga acaaaccgcc
      301 cgccctcgcc gcgccctaat acacaatttc ggatttagaa atagcgaatc gatattggcg
      361 ctagtgactc acgcctgcca ataatccgat tgtggaattc catgcattgc agcgcgcaca
      421 acgaattgga accgctgctg cagcgccgca atccggcgat cctccacgga ccacgcaaac
      481 accttcagtc tccatgccgg tggacgtagc gagtaccgtc cgtgctcgca cgcaccggct
      541 ttataacaat ttcggggcga cgatgagcga tacacccacc accactccat cttacgaagc
      601 cgaacggcag cccgagcggt ccagcagcgg cccctttaaa accgaagact ggtgggccgt
      661 ctggatcggc ctggcaatca tcgtgatcgc gtacttgcta tttgcgtcag gcacgagcat
      721 caagtggctg gcagtcgcac ccgccaagtg gtcgagcggt gcccaggcag tgacggacct
      781 gggacatcat ctcccgaact acatcgcact ctttatcgtc ttcgccattc tgttcggcat
      841 cgcggtcgcg gcgctcgggc aacaggtcgc gctgttcgtg ccgggctttg ttgtcgtgtt
      901 cgtggtttcg gcgctgatct tcatcgccgg ggcctggacc aagtcgtcga cgtacaacct
      961 cgaaccaccg ctgatcgcgc tcgcgctggg cctgattgtc tcgaacctga cgcggcttcc
     1021 ggcatggctc gtacctgcgt tgcgcgtcga gttctacatc aaggtcggta tcgtgctgct
     1081 cggcgctacg ctgcccttca cgctgctcgt atgggccggt ccggtcgcag tcggccaggc
     1141 gaccgtcgtt tcgctggtca ccttcttcgt catctttctg gtcggccgcg cgctcggact
     1201 ggacaagcgt tttgcggccg tgctcggtgt tggcggcgcg gtgtgcggcg tgtcggcggc
     1261 catcgccatt gcgggggcag tgcgagcgaa gcgcgaacaa gcgtcggtgg ccatcacgct
     1321 cgtggtggtc tgggcgatcg tgatggtgtt cgcgctgccg ttcgtgtccc gtgcgctcgg
     1381 cttgccgaca ggcgtggccg gtgcgtggat cgggacatcg gaattcgcgg atgccgccgg
     1441 cattgccgcc gcacaggcgt acggtgatct ggcgaagcac gccggcagcg cgattgccgg
     1501 tgcgccggaa gcgtcactgc aagccttcac gctgatgaag gttgtaggac gcgacatctg
     1561 gatcggcatc tgggcattcg tgcttgcgat tgttgctacc acgcgctggg atcgcgacga
     1621 acccggcgcc gtgaaaacgc agacgacggc gcgcgaaatc tggacgcgct ttccaaagtt
     1681 cgtgatcggc ttcctgatcg cgtcggcact cgttacgtgg atcggcagcc attacacgct
     1741 gactgaatac cggagcgtcg tgacgcccgc cttcgtcgca ccgatcaccg cactgcgcac
     1801 ctgggcgttc actttctgtt tcctcagcat cggtttgacg acgcgactcg gcagcttgtc
     1861 cgcgacgggt gcgaaacctt tcatcgcgtt cacggcgggc gttgccgtca acgtggtgat
     1921 cgggtacctg ctgtcagtgc atgtgttcgg ggcgtattgg gcctcgctcg gacaatgaag
     1981 atgaacggtg ccgccaagct tgatgacaag ggtgcttccc gcaccgtctg cgctgcttgc
     2041 cggcattgcg aacaagaccg gcacgtactc gaagcgatga ttcccgggct gacttcgttc
     2101 agctcgggat tcggagcgag tgtgggagag actcggcttt gccgtcgcca tgatcaattg
     2161 gtatcgccgg gcgattcgtg cagccggttc gaggcggtac gcgagggtcg tgacgccgtc
     2221 acgacccgtt gacactcgtc cttgctttgc acaaggcgga tctgtcacaa acagctatgc
     2281 cgtcgcgaaa gcgatatccg aggggctgcc aaccgccacg taggtgcccg taaatcgaag
     2341 cttgccactg gccgcatcaa cggcaaagat cgcgatttga tcactgcgtt gattcagtga
     2401 atacaggaac cggcccgacg gatcaaactt gatcactcga ggatagtcgc cgccggtcgg
     2461 agtctcacca acacgcgtca gacgaccgtc cgtgcccacg cgaaactgca cgatggtgtc
     2521 atgcagacgg ttcgccacat agataaagcg gccgtcatgt gaaagcagga tctccgatgc
     2581 gaagctcgtg ccctggtaag cggctggcaa cgttgataca gattgcaatt gcgtcagcac
     2641 gccgcgcgcg ctgtcgtatg catagcagac cagggtcgac gcttcctcgg tgacttcgta
     2701 cagataccgg ccgctcggat gaaataccac atgccgtggt cccgcgcctg ccgaagaggc
     2761 gacaaacggt gggtcgttcg gcgacagcgt gccagcggtt tcatcgaact tccagatata
     2821 ggtgcgatcg acgccgaggt ccgtggaaat gacaaatcgc ccgtccggcg aagacacgat
     2881 attgtgcgca tgcgaaccgt cgtggtcgct aaccgcgaag ctcccaggga cgccttctgc
     2941 cgcgtgttgc gcacctgccg gagcctgcgg ctgttgcacg gaactggcgt cgcccaacgt
     3001 gccgtcgctt gccaccggaa aaaccgcgat gcttccgctg ttgtagttcg cgaccagcag
     3061 gaagcggccg ttcggatgca gacttagata gaccggcccg gcgccttgcg aattgaccgt
     3121 gttgatcaga tgcaacgaac cggtgccggg ttcgattgca taggcgctga ccgaaccgtt
     3181 tttggtgccg ttgtagttct tcacctcgct cacggcaaac aggaaacgct gttgccggtc
     3241 gacgacgagg cagctcggat tctcgatgcc acgcagcggc tcgagcgcgt caagcttgcc
     3301 ggtgttccgg tcgacctgga agcgatgaat accaaggccg tttggcgtat aagtgccgac
     3361 gtaagcaaat agcggctcgg ccgtctgcgc tttgcttgcc gtgctcgcag ccgcactcgc
     3421 cgcctgtgcg gggcgcgctg ctgcgagcga acccatggcc gacatggctg ccagcgcgct
     3481 cacgcgtttg agccaaccac gtcgcgcctg cgatgcacgg acttcgagat gtcgaacttt
     3541 gctcattgct tgcctcctgg atgatgactg acggccctca agtagattcg agcgccgcga
     3601 cagagatgac tgcctcgcat acggttcaag tcttg
//
LOCUS       DATGBK010000463         2416 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_5207, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000463 DATGBK010000000
VERSION     DATGBK010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2416
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5207"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..967
                     /locus_tag="VKJ77_06670"
     CDS             <1..967
                     /locus_tag="VKJ77_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HMC44990.1"
                     /translation="DFCVRVDRRMVNRRTVEALIRAGAFDSLHENRAQLIASVPLAME
                     AADQAAANAMQSGLFDMGDEPQQGHDLVDEAMWSDKKRLQEEKSALGFYLSGHLFDAY
                     KTEVRRFVRQKIGELKEGRDKLVAGVITTMRTQMTQRGKMLIVNLDDGTGQCEVTVYN
                     EQFEANKALYKEDELLVVQGQARNDAFTGGIRFTVEAAMDLERSRSRYAQAVKVEMNG
                     NADALRLKKVLEAHSAPPEQAAAPAAVQAPSRGGSRGGGDRDGGRGQRQPVHIPNGLN
                     VSIVYRSEHAEGEVRLGDAWRVKPTDDLITALRGEFAGSSIEIVY"
     gene            979..2076
                     /locus_tag="VKJ77_06675"
     CDS             979..2076
                     /locus_tag="VKJ77_06675"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC44991.1"
                     /translation="MKVAVSANALKLSGGLERYALDLIRGLNAAGFTGERKPVFFARK
                     IDASQPESQMVDARRINVSFLPSRLRDTYYNWALKRARKKARVDLLIGCNRVESSEIA
                     ICGGTHIGFLAATGRRERPSDSRQIALERLQYQQASVIVAHSEMMRDELRSLYAVADS
                     KIRVLYPPVDGSRFSPVPDEKRRELRKQFGFADHEIVLLFPSSSHERKGLPLIEAALR
                     DSGLPVVVAVAGRPPAQTSAQVRYIGYAKNIEDAYRAADFTVLASKYEPFGLVGIESV
                     MCGTPVIFPTSVGCCSAIADNAKFTFQPGDAEGLRHAVRRALDAKNTSVTAASILYDT
                     SIAAHVASLLALAEGIAADMPVSASGSVQRA"
     gene            complement(2045..>2416)
                     /locus_tag="VKJ77_06680"
     CDS             complement(2045..>2416)
                     /locus_tag="VKJ77_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HMC44992.1"
                     /translation="RLFKRGTARFSDDLVHERLVLTNPDATKVARLQGKLMHYSYEDF
                     ETVLRKLDNYSTAGARQRHAAGKRGSLATAVLRGAWAFVRTYLLRRGFLDGRAGFMIA
                     VFNAQTVYYRFLKLSELNRMR"
BASE COUNT          481 a          710 c          798 g          427 t
ORIGIN      
        1 cgacttctgc gtgcgggtgg accggcgcat ggtgaaccgg cgcacggtgg aagcgctgat
       61 ccgtgccggc gcgttcgatt cgttgcatga gaaccgggcg caattgattg catcggtgcc
      121 gcttgccatg gaagcggccg atcaagccgc ggccaacgcc atgcagtccg gtctcttcga
      181 catgggcgac gaaccgcaac aaggtcacga ccttgtcgat gaagccatgt ggtcggacaa
      241 gaagcgtttg caggaagaga aaagcgcgct gggcttctac ctgtcgggcc atcttttcga
      301 cgcgtacaaa accgaagtgc gacgcttcgt gcgccagaag atcggcgaat tgaaggaagg
      361 gcgcgacaag cttgtcgcag gcgtgatcac caccatgcgc acgcagatga cccagcgcgg
      421 caagatgctg atcgtgaatc tggacgacgg caccggccag tgcgaagtca ccgtgtacaa
      481 cgagcagttc gaagcgaaca aggcgctcta caaggaagac gagttgctgg tcgtgcaggg
      541 tcaggcgcgc aatgacgcgt tcaccggcgg cattcgcttc acggtggaag cggcaatgga
      601 tctcgagcgc tcacgcagcc gctatgcgca ggcggtgaag gtggaaatga acggcaacgc
      661 cgacgcactg aggcttaaga aggtgctgga agcgcatagc gcgcctcctg aacaagccgc
      721 tgcaccggcg gcggtccagg caccatcgcg tggaggctcg cgaggaggcg gtgatcgcga
      781 cggcggccgt ggccagcggc agcccgtgca tattccgaat ggcctgaacg tgagcattgt
      841 gtatcgcagc gagcatgcag agggtgaagt gcggctcggc gacgcgtggc gcgtcaagcc
      901 gaccgacgat ctcatcacgg cattgcgcgg cgaattcgcg ggaagctcaa tcgaaatcgt
      961 gtattgatgc gcgccgggat gaaagtcgcc gtctccgcca acgcgctgaa actcagcggc
     1021 ggacttgaac gttacgcgct ggacctgatt cgagggctca acgcggccgg attcaccggc
     1081 gagcgcaagc cggtgttttt tgcgcgcaag atcgatgcgt cgcagccgga aagccagatg
     1141 gtcgatgcgc gccggatcaa cgtgtcgttc ctgccttcca ggctgcgcga cacgtattac
     1201 aactgggcgc tcaaacgggc gcgcaagaaa gcgcgggtgg atctgctgat tggctgcaat
     1261 cgtgtggagt cctccgagat agcgatttgc ggcggtacgc atatcggctt tctcgccgcg
     1321 accggccggc gcgagcgccc ctcggacagc cgccagatcg cgctggagcg tttgcaatac
     1381 cagcaagcca gcgtgatcgt cgcgcactcg gaaatgatgc gcgacgaatt gcgctcgctc
     1441 tacgctgtgg ctgactcaaa gatacgcgtg ctttatccgc cggtggacgg ctcgcgtttt
     1501 tcccccgtgc cggacgagaa gcgccgcgag ctgcgcaagc agtttggttt cgccgatcac
     1561 gaaatcgtgc tgctgtttcc gtcgagcagc cacgagcgca aggggttgcc gctgattgag
     1621 gccgcgttgc gtgacagcgg cctgccggtg gttgtcgcgg tcgctgggcg gccgcccgcg
     1681 cagacctcgg cgcaggtgcg ctacatcggc tatgcaaaga atattgaaga cgcttatcgg
     1741 gctgcggatt tcaccgtgct tgcctcgaag tacgagccgt tcgggctggt cggtatcgaa
     1801 tccgtgatgt gcggcacgcc ggtgatcttc ccaaccagcg taggctgttg cagcgcaatt
     1861 gcggacaacg cgaaattcac cttccagcca ggcgatgcag agggcctgcg gcacgcggtc
     1921 cggcgcgcac tggatgcaaa aaataccagc gtgacggcgg catccattct ttacgacacc
     1981 agcattgccg cgcacgttgc gtcgttgctg gcgctcgccg agggcatcgc tgccgacatg
     2041 ccggtcagcg catccggttc agttcagaga gcttgagaaa ccggtaatac acggtctgcg
     2101 cgttgaacac ggcaatcatg aaacctgcac ggccgtcgag aaaaccgcgt cgcagaaggt
     2161 aggtacggac aaaagcccac gccccgcgca gcaccgcagt ggccaagctg ccgcgttttc
     2221 ccgccgcgtg gcgttgacgc gccccggccg tggaataatt atccagcttg cgcaagacag
     2281 tctcgaagtc ctcgtaggaa tagtgcatca gcttgccctg caggcgcgcg accttggtgg
     2341 cgtcggggtt cgtcagcacc agccgctcgt gcacgaggtc atcggagaag cgggctgtgc
     2401 ctcgtttgaa caaacg
//
LOCUS       DATGBK010000464         2841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_306509, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000464 DATGBK010000000
VERSION     DATGBK010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2841
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306509"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(266..2248)
                     /locus_tag="VKJ77_06685"
                     /pseudo
     CDS             complement(266..2248)
                     /locus_tag="VKJ77_06685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012338738.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0140737 - encapsulin nanocompartment
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="family 2A encapsulin nanocompartment cargo
                     protein cysteine desulfurase"
     gene            complement(2223..>2841)
                     /locus_tag="VKJ77_06690"
     CDS             complement(2223..>2841)
                     /locus_tag="VKJ77_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004184450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44993.1"
                     /translation="DLYSSPHDQIKEQLRLTIETIKELQESQLINNPDYGLLANVAEE
                     QRVFPLTGAPTPDDLDELLTRVWKEPAFFLTHPLAIAAFGRECTRRGVPPPTVSLFGS
                     QFLTWRGIPLIPSDKVPVADGKTKILLLRVGDKRQGVVGLFQPGVAGEQGPGLSVRFM
                     GINNHAIASYLISLYCSLAVHSPDALAVLDDVEIAKYHDYPDTYK"
BASE COUNT          569 a          918 c          840 g          514 t
ORIGIN      
        1 gaagatcttt ccgtctagtt acgtacgaag cggccttcga acgtcgtgtg gatgccgcgg
       61 gcggaccgct aaggtcatcc gcgtggctga accaggcgcg gacgtttggc cgttcccaaa
      121 gtggcccagg gaacgcggcg gctgaacgac ctgccggagc caatcccctt acagtcgcat
      181 atggggaccg tgaccaggtg gcgcccttct gtcagcgcgc ggtcgcggtg accgcgcgct
      241 gcgttactcg tttccagctt ccagcctacc gccgcgtcgc aagccggcgc acgacggaca
      301 cgagcctgtc tacttcatcg cacgtgttgt aaaaagctag cgacggacgc acggtcgcct
      361 ccacgccaaa acgcctgaga atcggttggg cgcaatgatg acctgaacgc acggcaatcc
      421 cttcttcgtt caacgcctgc ccgacctctt ccgtctcgta gcccttcaac acgaacgaca
      481 atacgctggc tttgtccttc gcggtaccga tcaaacgtac gcccggcacc ggctgcaata
      541 cgctcgtcgc ataggccagc agatcgtgtt cgtagcgccc gatattctcg atacccacac
      601 gcgttacata atcgatcgct gccccaaggc ctaccgcatc ggcaatgttg cccgtacccg
      661 cctcgaagcg atttggcggc gcctggaaca cagttttctc gaacgtcacg tccgcgatca
      721 tattgccgcc gccctgccat ggcggcatgt cctcgagcag atcgcgtttg ccatagacca
      781 caccgatacc ggtagggccg aacagcttgt ggcccgagaa cacaaagaaa tcagcatcga
      841 tttcctgcac gttcacgcgc atgtgcgaga ccgattgcgc gccgtcaacc agcgcccgcg
      901 cgcctgcacg atgtgccatt gcaacaatct cttgcaccgg cacaaccgta cccaacgcgt
      961 tcgacacctg cgtcaccgag acgatcttcg tgcgactgtt gagcagtttc tgatattcat
     1021 cgagacggac ctgacccgag tcgtcgacag gaatcacgcg tagcgttgcg cccttttctg
     1081 cggcgagttg ctgccaaggc acgatgttgg cgtgatgctc gagatgagac acgatgcgct
     1141 cgtcgccctc gccaacgttt tgcacgcccc aggtcttcgc gatcaggttg atgccttctg
     1201 tcgtgccgcg cacgaagatg atctcttccg acgatgcggc gccaatgaag cgcctaaccg
     1261 tatcgcgtgc accttcgtat gcgtcggtcg cacgtcaggc cgatgcatgc gcggcacgat
     1321 gaatgttcga gttctcatgc gcgtagaaat acgacaggcg gtcgatgacc gactgcggtt
     1381 tctgcgtcgt cgcggcgttg tcgaaccaca cgagctgacg tccgttcacg cgctcttgca
     1441 gaatcgggaa gtcgcgacgg atggcgttga catcaaaggg tggatgcgcc gaaccggtct
     1501 gcggcaagtg ctcattcgaa tacggcgcac gcgcattctc gagaaagtag aacgaaccgc
     1561 tacggtcggg ctcaccaccc gtcgacactg aacgctcgcg accgttgaac gagcgcaagt
     1621 ggtcaataga cggcaagccg agcgattcgg ccgttggcac atcatgactg ggtaacggca
     1681 attcgcggct cgcgctcgtg tctcgaagga aataaaacgg cgacgccgat tgatcacgtt
     1741 gcccggcatc aggcacgccg acgcccagcg ccgcgccacc gaagcgcggt tccagcgccg
     1801 gcgcggcgct cgtcacggag tcaggtacgt tgttttgcgc gaccgcatgc ggcgccagcg
     1861 ccggcaagcg attgcccaat gacaacacgt gcgtgggcga cgacggaagc aggttggcgc
     1921 ccggcgcctt gccctgcgga aggctcaggc ctggcacgcc cgtccctgca ccgcccggcc
     1981 ccgccaacgg cgacccaggg ggcgccggat tgctcgcgga agcaagcacg ggtgccgcca
     2041 acggcaaccc tgccgagagc gactcaccac tgccactgcc gaggctcgca agcgcgggcg
     2101 tagcactccc cggtaaggcc gaaaagaacg cattcgcaag acgcgacaac atggcggcat
     2161 ccggcaagcc ggccggggcc gcgccctggg gtacatcggg aagcgaagcg ctgctcactg
     2221 gcttacttgt aggtgtcagg atagtcatgg tacttggcga tctccacgtc atccagaacc
     2281 gccagtgcgt ccggcgagtg cactgcgagc gagcaataca gcgaaatcag gtacgaggca
     2341 atcgcgtggt tgttaatccc catgaagcgc accgaaagcc ccggcccttg ctcgcctgcc
     2401 acgcccggct ggaacagacc aaccacgcct tgccgcttgt cacctacgcg cagcaacagg
     2461 atcttggtct tgccgtcggc aacaggcacc ttgtccgacg ggatcaatgg aatgccacgc
     2521 cacgtgagaa actgggaacc gaacaggctc acggtcggcg gcggcacacc gcgacgcgtg
     2581 cactcgcgcc cgaacgccgc gatggcgagc ggatgagtca ggaaaaacgc gggctctttc
     2641 cagactcgcg tgagcagttc atcaagatca tcaggggtcg gcgcgccggt cagcggaaac
     2701 acgcgctgtt cttcagcgac atttgccagc agaccgtaat cggggttgtt aatgagctgg
     2761 ctttcctgca attccttgat cgtttcgatc gtcaggcgca gctgttcctt gatctgatcg
     2821 tgcggactac tatatagatc c
//
LOCUS       DATGBK010000465         3156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_52025, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000465 DATGBK010000000
VERSION     DATGBK010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52025"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..141
                     /locus_tag="VKJ77_06695"
     CDS             <1..141
                     /locus_tag="VKJ77_06695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005615 - extracellular space [Evidence
                     IEA];
                     GO_function: GO:0047989 - hydroxybutyrate-dimer hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019605 - butyrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate oligomer hydrolase family
                     protein"
                     /protein_id="HMC44994.1"
                     /translation="QVVHTVPRGGTAGAAPALSMNNLPAILASPGANAITFGGGGVNV
                     PN"
     gene            complement(335..1126)
                     /locus_tag="VKJ77_06700"
     CDS             complement(335..1126)
                     /locus_tag="VKJ77_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2242 domain-containing protein"
                     /protein_id="HMC44995.1"
                     /translation="MHTLFARPISRLSLALPLLILAACGGKAAPTPSYQGEMFSTGAT
                     PFAHNYDATSQETCEASRRALLSQGYMTTMTQPDTIDATKNFQPSADTHVVVSFHVVC
                     TAGENATNTSIAYVNAVQDGYTLKKSDTSASVGLSVLGSLSLPIRSNSDSMVKISSET
                     VPAGKFYERFFSLVDHYLKTVPRSSPIPGESVSSQALPPSLILNSPDLTPIPIVVQTP
                     AASSAARAELNSGAANAARAASAVSAASATGVTAATPASAPAAAP"
     gene            2424..2645
                     /locus_tag="VKJ77_06705"
     CDS             2424..2645
                     /locus_tag="VKJ77_06705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44996.1"
                     /translation="MWTEVKDRRTRARVGDDPRGVEFGLNDWAMFDNGETIDNPIFVG
                     NETPHLADLQRQQATKKHGSIRYRGWARK"
BASE COUNT          648 a          884 c          987 g          637 t
ORIGIN      
        1 caggtcgtgc acacggtgcc gcggggcggt acggcggggg cggcgccggc tttatcgatg
       61 aataatttac cggcgatatt ggcgtcgccc ggggcgaatg cgatcacgtt cggcggtggc
      121 ggggtgaatg tgccgaattg aaggaagtct tgatctcgcc gatcaaaggc cggccgacga
      181 gggtatcgga cgggtgcgat cttcgattag tcgaggcacg gccgctgaat gggcggccgt
      241 tgtggcgtcg cccgccgcga tcttcgattg attgtgtggc agcgaccgct gcgcaattgg
      301 ctacagcatg aacgaacgca ccggctggaa gcgcttaagg cgcggccgcc ggcgcggaag
      361 ccggcgtagc cgctgtcaca cccgtggcgc tggcggctga aacagcgctc gccgctcgtg
      421 cagcattagc ggcgccgctg ttcaactctg cgcgagcggc tgaactcgcg gccggcgtct
      481 gcacgacgat aggtatgggc gtgaggtccg gcgaattcag gatcagcgac ggcgggaggg
      541 cctggctgct gacgctctcg ccgggaatgg gcgaactgcg cggcacggtt ttcaaataat
      601 ggtcgaccag gctaaaaaag cgctcgtaga acttgcctgc cggcacggtt tcgctggaaa
      661 tcttcaccat cgaatcgctg ttcgagcgga tcggcagcga gagcgagccg agcacgctca
      721 atcccacgct cgccgacgta tcgcttttct tgagcgtata gccgtcctgc acggcgttca
      781 cgtacgcgat gctcgtattg gtggcgttct cgcccgccgt gcagaccaca tgaaacgaca
      841 ccaccacgtg tgtatcggcc gacggctgga agttcttcgt ggcgtcgatg gtatccggct
      901 gcgtcatcgt cgtcatgtaa ccctggctca gcagcgcgcg gcgcgaggct tcgcaggttt
      961 cctggctggt ggcgtcgtag ttgtgggcga acggcgttgc gcccgtcgag aacatttccc
     1021 cctggtagct gggcgtgggc gctgctttgc cgccacacgc ggcgaggatc agcaggggca
     1081 gggcgagcga aagacgggaa atcgggcggg caaacagggt gtgcatgaca gtcggcagga
     1141 tgaatcgaag gacatcgacg gcctagattg tagtgtgccg ggccggtgaa cgtaaaaagc
     1201 aagaaattac cggggcattg cgtgccggta ccctttgctt tggtgactga ttccggttgg
     1261 ctggttgtta cttcagacaa gcaacatttt cagctaaacc gccgcggcct ttcaaattcc
     1321 cgattccccc cgtacaccag atccgaccat cactcgccgg ttgccgggaa tccgcgatgc
     1381 cgggtggtcg aatcgatcat tggacaggtg aagcatgtcc tggcaggctc aaggagtaaa
     1441 cccggtgacg tgcggcaagc ggtgttttgc gcgcatggtt ttcagcgctt gggctatcgg
     1501 tcgcgccggc tgctgcgtgc aattgttcac ctgactctgg tcgcggcatt tttttctgca
     1561 tggctgtttg cacggtgtgc gcctggatgc gagccgctct tttcgttacc gcgttctaac
     1621 cgttcgagca tgccccctcg ttgttcccta cagcaactac agcttcgtct cggttcgcgt
     1681 gctgaattgt gcggcgctga cctacctatc gtcgcccggc gttctggcac gcgcgacgca
     1741 taaagcgcac acaaagacgc cgatgagcac gccgataaaa aagcatgcgg cgtgcgtgaa
     1801 aaagctgaac atctagtaat ctccttttcg gttgaatatc gggaaaatgg tggtagcgca
     1861 gaccaagata agtgcattcg atcagacaca gcttattgcc tgattccctg acatactccg
     1921 gcactccggc gcgccacggc gagatagctt acctcacaag ccttgccgga agagctgaat
     1981 ccgctgtcgt cttttccttg cagtagctgc ttaggcattg cgacaagtcg cccgacgtca
     2041 ttgcaacgcg gcgctctcgc gcgcagcttt gggttcctgt tcaaaacgaa cgctgagcgc
     2101 ggcgggtcgg agctaaccaa aattctacgt ttggctcggg ctgcgtactg gctggtttgg
     2161 tcggccaagt agtgcgccgc cttcgggaac gaattccgcg caggatcgag tggagtcagc
     2221 ctctaatgga ttgcgatgaa caaactagac agccgccgca tccgtcaata tacggaggaa
     2281 tttgagagcg tggctcttgt tgagccacac gtgcccgctc gtcgcttttg acacatcgac
     2341 aaacagccgg taggagaatc ggcatctggc atcgtcgtca tagctacctt catatttagt
     2401 tagggcaact acgggagact gttttgtgga ccgaggtaaa ggatcgccgc acccgcgcac
     2461 gcgttggtga cgaccctcgc ggcgtcgagt tcggcctcaa cgactgggct atgttcgaca
     2521 acggcgagac gatcgacaat ccaatattcg tgggcaacga gacgccccat ttggcggatc
     2581 tgcagcggca gcaggcgacg aagaagcacg gatccattcg ctatcgcggc tgggcacgca
     2641 agtagcgaag ctgcacgagc gtatcggcaa cctgagctgc gaatttctgc ataaggaaac
     2701 gacgattgtg gtgcagtctt gcgctgtcat cgcgacagaa gaactgcgga caccgaatat
     2761 gagctactcg gccaagggca cgcacgacaa gcactgccgg atggtcaagc aacaggccgg
     2821 ggtggatcgc gaaaatctgt cggctggatt gagcatggcg caaaactagc tcgcgcacaa
     2881 agcagaagaa gctggtacgg gactgcatgt gtcaaacacg cgccaattaa aaccatcgca
     2941 gcgcagcgtg ctgggagatt gtgcccaatg cgctcgcgca acgagtgcct atgtttatgc
     3001 atcgtggaca cactgcacaa cgcgatctaa acagagcacc ggtcgtcccg atcgatgcgc
     3061 atatgcctga aacgggcgta acggcgagac ccaaacctct gacgcggtaa cgcccgaagt
     3121 caaaatctgt ggcctgagac acctgctaca gcgtcg
//
LOCUS       DATGBK010000466         2638 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_260450, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000466 DATGBK010000000
VERSION     DATGBK010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2638
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260450"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(123..2144)
                     /locus_tag="VKJ77_06710"
     CDS             complement(123..2144)
                     /locus_tag="VKJ77_06710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl/propionyl/methylcrotonyl-CoA carboxylase
                     subunit alpha"
                     /protein_id="HMC44997.1"
                     /translation="MFNKILIANRGEIACRVAATCKRLGVGSVAVYSDADAQAKHVAV
                     CDEAVHVGGAAASESYLRIEKIINAALATGAQAVHPGYGFLSENEDFARACEKVGLVF
                     IGPPVEAISAMGSKAAAKALMQSASVPLVPGYHGDSQDPALLQKEADGIGYPVLLKAS
                     AGGGGKGMRVVEKSADFASALLSCKREAASSFGNDRVLIEKYLQRPRHVEVQVFADQH
                     GNAVYLFDRDCSVQRRHQKVLEEAPAPGLSDEVRKAMGEAAVAAARAVNYVGAGTVEF
                     IMTGDGQFYFMEMNTRLQVEHPVTEMVTGLDLVEWQLRVASGEPLPLLQDQLKVNGHA
                     IEARIYAENPSRGFLPSTGTLKHMRLPEAVEFQLNGNVRIDSGVREGDTITPFYDPMI
                     AKLIVHGSDRDDALLRMALALKQCEVVGPSTNIEFLHRIVVSVPFSAADLDTGLIERH
                     HDTLFAPSTVPKTQALALACAALLTREGGEAHGVSPWDALSHWRMSGGYTQALNWRLV
                     GSDDEILAVFTRDSTSGRGENKQLELLGETLTFDWSHGDEPHAFVVLIGDKRIKGRVF
                     IDGDVFHVFYAGASLAFEWQNLLAHAADAEHGEGRLTAPMPGKVIAVLVEVGAVVEKG
                     APLLVMEAMKMEHTIVAPASGTVGEILFSVGDQVSDGAQLLVMEVQSAK"
     gene            complement(2258..>2638)
                     /locus_tag="VKJ77_06715"
     CDS             complement(2258..>2638)
                     /locus_tag="VKJ77_06715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HMC44998.1"
                     /translation="TVIIGGSFGAGNYGMCGRAYSPRFLWMWPNARISVMGGEQAASV
                     LATVRRDGIEGKGGTWSKEEEEAFKSPIREQYEVQGHPYYASARLWDDGVIDPAQTRD
                     VLGLGLAACMNAPIEDTRFGVFRM"
BASE COUNT          570 a          905 c          671 g          492 t
ORIGIN      
        1 agccgatcgc gaccaacgac acacccgaag ggcgtgcgtt gaaccggcgc gtggaaatcc
       61 tcgtgaagac ggaaactgaa gacaccctgc tgggcagatt gaaaacgaaa taacgcaaag
      121 cgtcatttcg cggattgcac ttccatcacc aatagctggg cgccatcgct aacctgatcg
      181 ccaacgctaa acaaaatctc gcccaccgtg ccgctcgccg gcgcaacaat ggtgtgctcc
      241 atcttcatgg cttccatcac gagcagcggc gcgcccttct cgaccaccgc acccacttcc
      301 accagcaccg cgatcacttt gcccggcatc ggcgccgtca agcgaccctc gccatgctcg
      361 gcatcggcgg catgcgccag caggttctgc cattcgaacg ccagcgacgc accggcgtag
      421 aaaacatgga acacatcgcc gtcgataaac acacgtccct tgatccgctt atcgccgatc
      481 agcacgacga atgcatgtgg ctcatcccca tgcgaccagt cgaacgtgag cgtttcgcca
      541 agcaattcga gttgtttgtt ttcaccgcgg cctgatgttg aatcgcgcgt aaagacggcc
      601 aggatttcat cgtccgaacc cacgagacgc cagttcaacg cctgcgtgta gccaccactc
      661 atccgccagt gcgacaaagc atcccacggc gacacaccat gcgcctcgcc gccttcacgc
      721 gtgagcagcg cggcgcaagc caacgcgagc gcctgcgttt ttggcactgt cgacggcgcg
      781 aacaacgtgt cgtgatgacg ttctatcaga cccgtatcaa gatcggccgc cgagaaagga
      841 acgctgacca caatccgatg caggaactcg atattcgtcg acggacccac cacctcgcat
      901 tgtttcaacg caagcgccat gcgcagcagc gcatcgtcac gatcactgcc gtgcacaatc
      961 agcttggcga tcatcggatc gtaaaacggg gtgattgtat cgccttcacg cacgccgcta
     1021 tcaatgcgca cgttgccgtt cagctggaac tcgacagctt caggcagacg catatgcttc
     1081 agcgttcccg tcgacggcaa gaacccacgc gatggattct ccgcatagat acgcgcttcg
     1141 atcgcgtgac cattcacctt caattgatcc tgcaacaacg gcaacggttc accactcgcc
     1201 acgcgcagtt gccactcgac cagatcgagt cccgtcacca tttcggtcac cggatgttca
     1261 acctgcagtc gcgtgttcat ctccatgaaa tagaactggc cgtcgccggt catgatgaac
     1321 tcgaccgtgc ctgcgcccac gtaattcacc gcgcgtgccg ccgcgactgc agcctcgccc
     1381 atggctttac gcacctcatc ggagagacca ggagcgggcg cttcttccag caccttttga
     1441 tggcgacgct gcaccgagca atcgcgatcg aagagataca cggcgttgcc atgctgatct
     1501 gcaaacacct ggacttccac atgccgcgga cgctgcagat atttttcgat cagcacacga
     1561 tcgttgccga aactgctcgc ggcttcacgc ttgcatgaca acagcgctga cgcaaaatct
     1621 gcacttttct cgaccacacg catgcccttg ccgccgccgc ccgcgcttgc tttcagcagc
     1681 acagggtagc cgataccatc cgcttccttt tgcagcaacg cggggtcctg gctgtcgccg
     1741 tgataacccg gcaccaacgg tacggacgcc gattgcatca gcgccttggc cgccgccttc
     1801 gatcccatcg cggagatggc ctcgaccggc ggccctatga ataccagccc gactttctcg
     1861 caagcccgcg caaaatcctc gttctccgac aaaaacccat accccggatg cacggcttgc
     1921 gcaccggttg ccaacgcagc gttgatgatc ttttcaatcc gcaaataact ctcggacgca
     1981 gccgcgccgc ctacgtgcac ggcttcatcg cagacggcaa cgtgcttcgc ctgggcgtcg
     2041 gcgtccgaat agaccgccac gctgcccacg cctaatcgtt tgcaggttgc agccacgcga
     2101 cacgcaatct cgccgcgatt cgcaatcagt attttgttga acatgacgaa gcctggtaag
     2161 aagaggtcag cctttcatgg ggcagcgcta aagcgccgag tgcggcctgc cgcgaagcat
     2221 ggggcaggac taagcgctaa agcgccaagt cctgccgtca catcctgaac acgccaaaac
     2281 gcgtgtcttc gataggcgca ttcatgcaag ccgccagccc aagtccgagc acatcgcgag
     2341 tctgcgccgg gtcgatcaca ccgtcatccc acaggcgtgc gcttgcgtaa tacggatgcc
     2401 cctgtacttc gtactgctcg cgaatcggcg acttgaaggc ttcttcctct tccttcgacc
     2461 acgtaccgcc cttcccctct atgccatcgc ggcgcacagt cgcgagcacg gatgcggcct
     2521 gctcgccgcc catcacggag atgcgcgcat tcggccacat ccagaggaaa cgcggtgaat
     2581 acgcgcggcc gcacatgccg taatttcccg caccaaacga gccgccgata atcaccgt
//
LOCUS       DATGBK010000467         3006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_5315, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000467 DATGBK010000000
VERSION     DATGBK010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5315"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1339
                     /locus_tag="VKJ77_06720"
     CDS             <1..1339
                     /locus_tag="VKJ77_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC44999.1"
                     /translation="DFSNVEADQTTIAPQEFARSFQEFRPFFAQGAQYIDPLPHVAIN
                     GAPNRIFYSPSIGIFDSGFKIEGTSGRNSIGLLSVHGDGFNDQAFGLSNARPDGSFSI
                     GAEGALVHHDGIIDNTLGAGGAVTNLKSGVQSIFSIAQETGTLIDAQSQAKAILFAEL
                     VQHGPFLAGVVYHDTGPEYAPLDGFTPINDIRGPQALIIYNGVGSKTGPIKSYSFSVV
                     ADRYLDRSGAVHEADSSYGASLLFKNLLSFGFGGNASELRTYANAFPVYAAPQNNVFN
                     QVGLQAGYRDGTPSPIDASYFYGPFAVFCPGVSPQPLVCGAGFANNFTPAFVQQLDVS
                     ASRTLGHGLGVSAEYGGTIEHGTGVPEDSEWLRRVSLTRAFGTEGQLAVGVRSINGTG
                     GFALPGTNIALSYHQRMHDGSQLYLEYGTPAAAATLQRAVIKYVFHIGGGAGT"
     gene            1411..>3006
                     /gene="dnaG"
                     /locus_tag="VKJ77_06725"
     CDS             1411..>3006
                     /gene="dnaG"
                     /locus_tag="VKJ77_06725"
                     /inference="COORDINATES: protein motif:HMM:TIGR01391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HMC45000.1"
                     /translation="MKREVLSRTDIAEYIGQFVTLRKRGNDMVGLCPFHGEKTPSFHV
                     HPDRGFFKCFGCGAGGDVIKFAQLQDNLTFPDALRMLAKRAGVEIAEENPAAARVRSE
                     KESIYHANDVAANYFHRMLAIDPAGEKARAYCEKRGLPRDIIDTFKLGYAPDRWDGLF
                     NELQANGVDPAVAVKAGLIKPGQRGYYDFYRDRLMIPTYATTGEAIAFGGRALGDEEP
                     KYLNTATTPVYTKGRFLYALNVARRAAGKEDAVIVVEGYLDCIALHQAGFGNAVAALG
                     TAFTPDQARELHKVTENVFICFDADSAGQAATAKSIDILIGAGCNARIVVLPAGEDPD
                     TYVRTHGHAGFAAALAAALPWVQFKLDREVDAIKTGFTGAAEIARRAEALVGHLPREE
                     WDRWRVYIAGRLGLSVDDLRKSRLINPVHFENRNGRSGVSGGARASRHIVPGSIEAPT
                     FEREVLAILLDEPTLLVEFAERIPADRFENPLLRRIYSTLLERRGELLQPFDVHGVFA
                     QDGDASAALMTIAGSERSVIVQFA"
BASE COUNT          577 a          881 c          927 g          621 t
ORIGIN      
        1 tgacttctcg aacgttgagg ccgatcaaac gacgattgcg ccgcaagaat ttgcacgcag
       61 ctttcaagaa ttccggccct ttttcgcgca gggggcgcaa tatatcgatc ccttgccgca
      121 cgtcgccatt aacggtgcgc ccaatcggat tttttattcg ccatcaatcg gtattttcga
      181 ttcggggttt aagatcgaag gcacatcagg gcgcaattcc atcggcctgc tgagcgttca
      241 cggcgatgga tttaacgatc aagccttcgg tttaagtaac gcgcgtcctg acggctcttt
      301 tagtatcggt gccgaaggcg cgctcgtcca tcacgacggg atcatcgaca acacactggg
      361 cgccggcggt gcggtcacga atctgaagtc gggcgtgcaa tcgatcttct cgatcgctca
      421 agaaaccgga acgcttattg atgcgcagtc gcaggcgaag gcgatactct tcgccgagct
      481 cgtgcaacac ggaccgtttc tcgcgggtgt cgtctatcac gacactggcc ccgagtacgc
      541 gccgctcgat ggcttcaccc cgatcaatga cattcgggga ccgcaagcgc tgataattta
      601 caacggcgtc ggcagcaaga ccggcccgat aaaatcctat agctttagcg tggtagcaga
      661 tcgctatctg gatcgaagcg gcgccgttca cgaggcggat tcgagttatg gggcgtcgct
      721 gctgtttaag aatttgctct catttggctt cggcggaaat gccagcgagc ttcgaacgta
      781 cgcaaacgca tttcccgtgt acgcggcgcc gcaaaataac gtctttaatc aggttggcct
      841 gcaggcaggc taccgggacg gcacgccttc gccgatcgat gcgtcctatt tttacggacc
      901 gttcgccgtg ttctgccccg gcgtttcacc gcagccgctt gtctgcggcg ccggcttcgc
      961 aaacaacttc acgccggcat ttgttcaaca gctcgatgtc tcggcgtcac gcaccctggg
     1021 tcacggactg ggcgtgagcg cggaatatgg cggtacgatc gaacacggca cgggtgtccc
     1081 tgaagattcc gaatggttgc gccgtgtctc gcttacgcgc gcgtttggaa ccgagggaca
     1141 actggcagtc ggcgtgcggt cgatcaacgg aactggtggg ttcgcgctgc cgggaacgaa
     1201 tatcgccctt tcgtatcacc aacgcatgca tgatggtagc caactgtacc ttgagtacgg
     1261 tacgcctgcc gctgctgcaa cactgcagcg cgccgtcatc aagtacgtct tccacatcgg
     1321 cggtggtgcg ggtacgtagg aggcggtccg aggcttcggc ggacctggcc ggaacgcgtc
     1381 gaactttatc gggtgcgcat tgacgacgga gtgaagcggg aggtgttatc ccgcacggat
     1441 attgccgagt atatcggtca attcgttacg ctgcgcaagc gcggcaacga tatggtcggt
     1501 ctgtgcccgt tccatggcga gaagacgccg tcgttccacg tccatccgga ccgcggattt
     1561 ttcaagtgtt tcggatgcgg tgcgggaggc gacgttatca aattcgccca gctgcaggat
     1621 aacctgacgt ttcccgatgc gctgcgcatg ctcgccaagc gcgccggggt ggaaatcgcc
     1681 gaagaaaacc ccgcggcggc gcgcgttcgc agcgaaaaag aatcgatcta tcatgcgaac
     1741 gatgtcgcgg cgaactattt ccatcgtatg ctggccatcg atccggccgg tgagaaagcg
     1801 cgtgcgtatt gcgaaaagcg cggcttgccg cgcgacatca tcgatacgtt taagctgggc
     1861 tacgcgccgg atcgctggga cggccttttc aacgaattac aagcgaatgg tgttgacccg
     1921 gccgtcgcgg tgaaagccgg tctgattaaa ccggggcagc gcggttacta cgatttctac
     1981 cgcgaccggt tgatgatccc gacgtacgcg acgacgggcg aagcgatcgc ctttggcggg
     2041 cgcgccctcg gtgatgaaga gccgaaatat ctgaacactg cgaccacgcc cgtgtacacg
     2101 aagggccgct tcttatacgc gctcaacgtg gcgcgccggg ctgcgggcaa agaagatgcg
     2161 gtcatcgtgg tcgagggcta tctcgattgc attgcgcttc accaggcggg tttcggcaat
     2221 gcggtcgcgg cgctcggcac ggcgttcacg cccgatcaag cgcgcgaact gcacaaggtg
     2281 accgagaacg ttttcatttg ctttgatgcc gacagtgcag ggcaagcggc aaccgccaag
     2341 tcgatcgata ttctcatcgg cgcgggctgc aacgcgcgca ttgtcgtgct gcctgcgggc
     2401 gaagatcccg atacgtacgt gcgcacccac ggtcacgccg gatttgccgc cgcactcgcc
     2461 gccgcgcttc cctgggtgca gtttaagctc gaccgcgaag tcgacgcgat taagaccggc
     2521 tttaccggcg cggcggaaat cgcgcgccgg gccgaagccc tcgtcggtca tctgccgcgc
     2581 gaagagtggg atcgctggcg cgtctacatc gccgggcggc ttggcttgtc ggtcgacgat
     2641 ttgcgcaaga gccgcctcat caatcccgtg catttcgaga atcgcaacgg acgatcgggg
     2701 gtaagcgggg gagcgcgtgc ctcccgtcac atcgtgcccg gcagcatcga agcgccgacg
     2761 ttcgagcgcg aagtgctcgc gattctgctc gatgagccca cgttgctggt ggaatttgcc
     2821 gagcgcatcc ccgccgaccg gttcgagaat ccgctgctga gacggatcta ctcgacgctc
     2881 ttagagcgac gaggggagct cctgcaacct tttgatgtgc atggcgtgtt tgcacaagac
     2941 ggtgacgcct cggcggcact catgacgatc gccggttctg aacgctcggt catcgtgcag
     3001 ttcgcc
//
LOCUS       DATGBK010000468         2145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_75096, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000468 DATGBK010000000
VERSION     DATGBK010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75096"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..886
                     /locus_tag="VKJ77_06730"
     CDS             <1..886
                     /locus_tag="VKJ77_06730"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009900418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC45001.1"
                     /translation="ALRLGELALAAGVPPGVVNVVTGRGSSAGQALASHPLVSKVTFT
                     GSTAVGKTVGHAAVDNMTRFTLELGGKNPMIVLADADVDNTIQGVLMAGLLNQGQVCA
                     AASRLYIHRDRFRQIVEGVAAAANSMSIGPGMDPTAQINPLISARQQQSVCRFIDIGR
                     AEGATVLAGGGAPDLPGYFVKPTVLIDVDHASTVVREEIFGPVLVAIPFDHTDDAIRL
                     ANDSPYGLAASLWSNDLGAVMNLVPQIQAGTVWINSHVPLDPNLPFGGHKQSGVGREF
                     GRQAVESCTEVKSVCIAH"
     gene            complement(1020..1916)
                     /locus_tag="VKJ77_06735"
     CDS             complement(1020..1916)
                     /locus_tag="VKJ77_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HMC45002.1"
                     /translation="MRNHKINATALLLAACCAINTARATEAAGDTIGAGAEGFLAGAL
                     PPAGLYGVLYYDHYHASRFNDGNGHSSVPGFGLTADVVIPRLVYMSELTVLGGRVGGY
                     ALVALPSLNLNVAGTSSSRAGIGDTVVGPMLHWGAGGALQTVAALDLSLPTGRYDKNS
                     ALNLGKNYTSVRPIFAVSYLPSNGLEASAKFTYTFNTKNNATDYLSGQLFHFDYSISY
                     AISSAAKLGINGYFIKQTTDDQQYGQEVGSDGFRGQALAIGPAFHYQFSRFGIEVRAL
                     KEYAVRNRPAGESLWTKAVFAF"
BASE COUNT          423 a          612 c          694 g          416 t
ORIGIN      
        1 ggcgttgcgc ctcggcgagc tggcattggc ggcgggtgtc ccgccgggcg tcgtcaacgt
       61 ggtgacggga cgcgggtcaa gcgccggaca ggcgcttgcc agtcatccgc tggtcagcaa
      121 ggtcacgttt acaggttcga ccgcagtcgg caagacggtg gggcacgcgg ccgtcgataa
      181 catgacgcgt ttcacgctgg aactgggtgg caagaatcca atgatcgtgc tggccgacgc
      241 cgacgtcgac aatacgatcc agggcgtact aatggccggg ttgctgaacc aggggcaggt
      301 gtgcgcggcc gcgtcgcggc tctatattca ccgtgaccgc ttcaggcaga tcgtcgaagg
      361 cgtcgctgcg gcggccaaca gcatgagtat cgggccgggg atggacccga ccgcgcaaat
      421 taacccgctc atatcggcgc gccagcagca atcggtgtgc cgtttcatcg acatcggacg
      481 ggccgaaggc gcgacggtgc tcgcaggtgg cggcgcgccc gatctgcccg gctactttgt
      541 caagccgacc gtgctaatcg atgtcgatca tgcgagcacg gtcgtgcgcg aggaaatatt
      601 cggcccggtg ctcgtggcga ttccgttcga ccataccgac gacgcgatcc gtcttgcgaa
      661 cgacagccct tatggtcttg ccgcgagtct gtggagcaac gatctgggtg cggtgatgaa
      721 cctcgtcccg cagattcagg ctggtactgt ctggatcaac agccatgtgc cgctcgaccc
      781 gaacctgccg ttcggcggcc acaagcagtc cggcgtcggt cgcgagttcg ggcgccaagc
      841 ggtagagagt tgcactgaag tgaaatcggt ctgcatcgcg cattgagcat aacaggagca
      901 cggtccacaa cggcaagtcc attctggaga cgactttgca cgcaatacag caacgtcggt
      961 gctcaaatcg gtaagcaaac gagcctcctt tccggaggct cgcttgcttt atgtccgtcc
     1021 tagaaagcaa acactgcttt ggtccacagc gattcaccgg caggacgatt gcgtaccgca
     1081 tattccttta gtgcgcgcac ctcgatccca aacctggaga actgatagtg gaacgcggga
     1141 ccgatcgcaa gcgcctgacc acgaaagcca tcgctgccta cttcctgccc atactgttga
     1201 tcgtcagtcg tctgcttgat gaagtatcca ttgattccaa gctttgctgc ggaacttatc
     1261 gcataactaa tcgaatagtc gaaatgaaag agctggccgg aaaggtagtc ggtcgcattg
     1321 ttcttcgtgt tgaatgtgta ggtaaacttg gcggatgcct caaggccgtt tgacggtaga
     1381 tacgagacgg cgaagatcgg gcgtactgac gtgtagttct ttccgaggtt taacgcgctg
     1441 ttcttgtcgt agcgtccggt cggaagtgac aggtcgagcg ccgcgacggt ctgcagcgca
     1501 ccgcctgcgc cccagtgcag cattggcccg acgaccgtgt caccgattcc tgctcggctg
     1561 ctgctggtgc cggcgacgtt caggttcaga gatggcaagg cgacgagcgc atagccgccg
     1621 acgcgaccgc ctaataccgt cagctccgac atatacacca gccgcggaat cacgacatcg
     1681 gcggtcagtc cgaagccggg caccgacgaa tggccgttgc cgtcgttgaa gcggctcgca
     1741 tggtagtggt cgtagtagag cacgccgtac agccctgcag gcggcagcgc gccggcgaga
     1801 aatccttcgg cgccggcgcc gatcgtgtcg ccggcggctt cggttgcgcg cgcggtattg
     1861 atcgcgcagc atgcagcgag cagcaaggct gtcgcattga ttttatggtt acgcatgatg
     1921 atgtttttgt ttggtcggtg ttgtacgcat gagcgtgcct gaccacgcgc ggctggctcg
     1981 acgcacgcgt gggaagaatc gtcaggaatg ggaagtcagt cgaggcttgc agcaggcagc
     2041 gagttggtcg tgcgcaggcg cagcggagcg gtctcggtca agaacaggga tagcagcgcg
     2101 ggcacgaacg aaccaacggc ggcgatccac atcacgatgg gcagg
//
LOCUS       DATGBK010000469         2396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_98078, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000469 DATGBK010000000
VERSION     DATGBK010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98078"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..646
                     /locus_tag="VKJ77_06740"
     CDS             <1..646
                     /locus_tag="VKJ77_06740"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45003.1"
                     /translation="LSVIVTVVTLLLGYPVAYLAASVPPKFSALILGMVILPFWTSVL
                     VRTYAWLVLLQRTGVVNKALMASGLIDHPLQLAYNQFGTVVAMVHILLPFMVLPLYSA
                     MQKIPQNLSQAGASLGGSPLHVFARVFLPLSMSGVVAGATLVFILCLGFYITPELMGG
                     GKSVMVSMVVSRNVEIYNSWGAASAVSVVLLVCVFAIFYAASRVVPLEKTLGAK"
     gene            670..1461
                     /locus_tag="VKJ77_06745"
     CDS             670..1461
                     /locus_tag="VKJ77_06745"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45004.1"
                     /translation="MKPFSFGRIVLGFGVLLILVFLMVPILIVVPLSFSDTRFMTFPP
                     PGYSLRWYHAFFSNPAWIDAARTTLIASTSAALIATPLGVAAAYAIQNGTHRSMRYLR
                     TVLMLPLMVPIIIVAVGVFFVYSQMGYVNTLGGLIVADTMLGLPYVLISVGADLRTFD
                     PTQEMVARSLGMNRLRSFMTVTLPQIKSSVISGAVFVFIQALDETVVALFVSGGANQT
                     LTRRMFVTLRDEIDPTIAAISTMLTALTLCLVMIVVVSRKSSARA"
     gene            1484..>2396
                     /locus_tag="VKJ77_06750"
     CDS             1484..>2396
                     /locus_tag="VKJ77_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC45005.1"
                     /translation="MSHALQFYIGGEWVAPVGHARLPVIDPSTEETFAEIAMGTPADV
                     DRAVAAARHAFASFSLTTPDERLALIRKILEAYGERYDEMAQLISREIGAPRALAQGW
                     QAGLGTRHLKELIRTCESFTWQRNKGTTLITHEPIGVVALITPWNWPINQIVCKVAPA
                     IAAGCTMVLKPSEVSPLNALLFAEILDAAGVPPGVFNLVNGDGPTVGAALCSHPDVDM
                     VSFTGSTRAGIQIATLAAPTVKRVHQELGGKSANLILDDADLHAAVTAGVNACFGNSG
                     QSCNAPTRMFVPAARHEEAVAIARRAAE"
BASE COUNT          402 a          717 c          739 g          538 t
ORIGIN      
        1 gctcagcgtg atcgtgacgg tcgtgacctt gttgcttggg tatccggtgg cgtacctggc
       61 ggcatccgtt ccgccgaagt tcagtgcgct gatactcggc atggtcatcc tgccgttctg
      121 gaccagcgtg ctggtgcgca cctacgcctg gctcgtgttg ctgcagcgca ccggcgtggt
      181 caacaaggcg ctgatggcga gcggcctgat cgatcatccg ttgcaactcg cctataacca
      241 gttcggcacg gttgtcgcca tggtgcacat cctgttgccg ttcatggtgc tgccgctcta
      301 ttcggcgatg caaaaaatcc cgcagaatct ctcgcaagcc ggcgcaagtc ttggcggctc
      361 accgctgcat gtgtttgcgc gcgtgttcct gccgttatcg atgagtgggg tggtggcggg
      421 cgccacgctc gtttttatct tgtgtctcgg cttctacatt acacccgagc tgatgggcgg
      481 cggcaagtcg gtcatggtct ccatggtcgt cagccgcaat gtcgaaatct acaatagctg
      541 gggcgcggcg agtgcggtca gcgtcgtgct gctggtctgc gtgttcgcca ttttctatgc
      601 ggcgagccgc gtggtgccgc tcgaaaaaac cctgggcgcg aaatgagcgg gataacccac
      661 atgaacgata tgaaaccatt ctcgttcggc cgcatcgtcc ttggcttcgg cgtcctgctg
      721 atcctcgtgt tcctgatggt gccaatcctg atcgtcgtgc cactgtcatt ctccgacacg
      781 cgcttcatga ctttcccgcc accgggctac tcgctgcgct ggtatcacgc gttcttcagc
      841 aatcctgcct ggattgatgc agcacgaacc acgctgattg cgtcgaccag tgccgcgctg
      901 attgccactc cgctcggcgt ggcggccgct tatgcgatcc agaacggcac gcaccgcagc
      961 atgcgttatc tgcgtaccgt cctcatgttg ccgctcatgg tgcctattat cattgtcgcg
     1021 gtaggcgttt ttttcgtgta ctcgcagatg ggatacgtga ataccctcgg tggcttgatt
     1081 gtcgcggaca ccatgctcgg tttgccttat gtgcttattt ccgtaggcgc cgacctgcgt
     1141 accttcgacc cgacccagga gatggtcgcg cgtagtctcg gtatgaaccg cttgcgcagc
     1201 ttcatgacgg tcacgctgcc gcagatcaag tcgagcgtga tctccggcgc ggtgtttgtc
     1261 ttcatccagg cgctggatga aacggtggtc gcgctgtttg tgtccggcgg cgcgaaccag
     1321 accctcacgc gccgcatgtt cgtcaccttg cgcgacgaga tcgatccgac cattgccgcg
     1381 atcagcacca tgttgaccgc cctgacgcta tgccttgtga tgatcgtggt ggtgagccgc
     1441 aagtcatctg cacgcgcctg aacgaaacct gacggggacc agaatgagcc atgcactgca
     1501 gttttatata ggcggcgagt gggtcgcgcc agtgggccac gcgcgcctgc ctgtgatcga
     1561 tccctcaacc gaggaaacct tcgctgagat tgcgatgggc acgcccgccg atgtcgaccg
     1621 cgcggtcgcc gcagcgcggc atgcgttcgc gtcgttttca ctgaccacgc ccgacgaacg
     1681 gctcgcgctg atccgcaaga ttctggaagc gtacggtgag cgttatgacg agatggcgca
     1741 gcttatctcg cgtgaaatag gcgcgccgcg tgctttggcg cagggctggc aagccggact
     1801 cggcacgcgg catctgaagg aactgattcg aacctgcgag tcattcacct ggcaaagaaa
     1861 caaagggacg acgcttatta cgcatgagcc tattggcgtt gtcgcgttga tcacgccgtg
     1921 gaactggccg atcaaccaga ttgtctgcaa ggtcgctccg gctattgctg cgggttgcac
     1981 gatggtgctc aagcctagcg aagtgtcgcc gttgaacgcg cttctgttcg ccgagatact
     2041 cgatgcggcg ggcgttccgc caggcgtatt caatcttgtg aacggcgatg gtcccacagt
     2101 gggcgcggcg ttgtgcagtc atcccgatgt agacatggtg tcgttcaccg gctcgacgcg
     2161 tgcgggtatc cagatcgcca cgctcgccgc gccgacggtt aagcgcgtgc atcaggaact
     2221 gggcggcaag tcggcgaacc tgatcctcga tgacgccgat ctccacgctg cagtgaccgc
     2281 gggcgtcaat gcctgtttcg gcaatagcgg ccagtcgtgc aacgcgccta cgcgcatgtt
     2341 cgtgcccgcg gcgcgtcatg aggaagcggt ggcaattgca cgccgggcgg ccgaag
//
LOCUS       DATGBK010000470         2306 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_191223, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000470 DATGBK010000000
VERSION     DATGBK010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191223"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..515
                     /locus_tag="VKJ77_06755"
     CDS             <1..515
                     /locus_tag="VKJ77_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004184941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC45006.1"
                     /translation="PLTAAIFNAGGARRAPTLELSAADFEQAWRTSVLGGFLFAQAAL
                     RRILNNGLNTASSTGRGTLLFTGATAALRGKPPFAAFAASKAALRSLSQTLAREFGAE
                     GVHVAHIVIDGGIDGERLRQSAPQRVQQAGDDGLLQAGAIAESYWQLHHQHRSAWTQE
                     LDLRPFKETF"
     gene            623..1438
                     /locus_tag="VKJ77_06760"
     CDS             623..1438
                     /locus_tag="VKJ77_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016834421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC45007.1"
                     /translation="MSKRPFLLALALCAALAPFSARAAGANELRIGFVPGPYADEFKA
                     GVEPQLREKGYTIKYVEFSTGLEANQAVYRGEIAADVMQHEVYLKSYNDRNGTDLVAV
                     VQVPTPPMGLYSKKHHALTEVRAGATVAVPNDPVNLERALKILQRIGWIKLRPSSNPV
                     DVTERDVIANPAGIKIVPLENAQAPRALDDVDFAAIQGNFAIFSGYKLTDALALEQMT
                     PPYINQLVVRAANKTSRSTQDIVDAYQSPAFQQAIRTNHFYDGFRLPEYFASK"
     gene            1544..>2306
                     /locus_tag="VKJ77_06765"
     CDS             1544..>2306
                     /locus_tag="VKJ77_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004553316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmcJ/NvfI family oxidoreductase"
                     /protein_id="HMC45008.1"
                     /translation="MSTVFEERPRADTLQAVEAELNYLRAGEGRPVSYTFEPPPGVAW
                     TSGALEPRRVTIRDARPLAAAGELSLDKSGFERIEHRSALTDFSDDAAIRSIYYSESE
                     QVLLKATGAEKVVVFDHTLRDSLSGSRATASLREPVRRVHNDQTFVSGPRRVRDHLPA
                     DEVAQRLKHRFAIINLWRPLDVVEQLPLALCDARSIAASDLVPSDLVYKDKVGETFSF
                     TYNPAHRWYYFPKLRPDEALLLKIYDSRDDGTARLT"
BASE COUNT          460 a          721 c          685 g          440 t
ORIGIN      
        1 gtcccctaac ggcggccata ttcaacgcag gcggtgcgcg ccgtgcgccc acgcttgaac
       61 tgagtgcagc ggacttcgag caggcgtggc gcaccagcgt gctcggcggt ttcctgtttg
      121 ctcaagcagc gctgcgccgc atcctgaaca acgggctgaa cacggccagc tcaacggggc
      181 gcggcacgct gctattcacg ggtgctacag ctgcgttgcg cggcaaaccg cccttcgccg
      241 ctttcgctgc atcgaaggcg gcgctgcgtt cattgagcca gaccctcgcc cgtgagttcg
      301 gagccgaggg cgtgcacgtg gcgcatatcg tgattgatgg tggcatcgac ggcgagcgtc
      361 ttcggcaatc tgcaccgcag cgcgtgcagc aggccggtga cgatggcttg ctgcaagcag
      421 gcgccatcgc ggaaagctat tggcagttgc accatcagca tagaagcgcg tggacgcagg
      481 aacttgattt gcgtccgttc aaggaaacgt tctgaacaac gaaccgcgcg tagagacgtt
      541 gcacgcggtt cgctttgatt tcgctgtcat gcgctccttg tgagcgcgcc tgcagtcatt
      601 tacttcttcc atttatcccc tcatgtcgaa acgccccttc ctccttgcgt tggcgctgtg
      661 cgctgcgctc gctccattca gtgcccgcgc cgccggtgca aacgaactgc gcatcggctt
      721 cgtaccgggg ccttacgccg atgaattcaa ggccggtgtc gagccgcaat tacgcgagaa
      781 gggttacacg atcaagtacg tggaattcag cacggggctg gaggcaaatc aggctgtgta
      841 tcgtggggag atcgcggccg atgtcatgca gcatgaggtc tatctgaagt catacaacga
      901 tcgcaatgga acggatctgg ttgccgtcgt gcaagtaccc acgccgccaa tgggccttta
      961 ttccaagaag catcacgcgt tgacggaagt ccgagccggc gcgacagtgg ccgtgcccaa
     1021 cgatccggtc aacctcgagc gcgcactcaa gatcctgcag cggatcggct ggatcaagct
     1081 tcgtccgagc agcaatccgg tggatgtgac cgagcgtgac gtgatcgcga atccggccgg
     1141 catcaagatc gttccgcttg aaaatgccca ggcgccgcgc gcactcgatg acgtcgattt
     1201 cgccgccatc cagggcaact tcgcgatatt cagtggctac aaactgaccg acgcgctcgc
     1261 ccttgagcag atgacaccgc cgtacatcaa ccagctcgtg gtcagggcag cgaacaagac
     1321 atcgcgcagt acgcaggaca ttgtcgatgc ttatcaatcg cccgcttttc agcaggccat
     1381 ccgaaccaac cacttctacg atggcttccg ccttccggaa tacttcgcca gcaagtaggg
     1441 ttatcgcgat gccaaccgca taaccttatg gatttttatt cgttcagctt cgggtcacgc
     1501 gggtatagct tagaagtctt gatcccgagg ccgaggaacg accatgagca ccgtattcga
     1561 agaacgtccg cgtgcagaca cgttgcaggc ggtagaggct gaactcaatt atctgcgggc
     1621 cggcgaaggc cggccggtaa gctatacgtt cgagccgccg cccggcgtgg cctggacgtc
     1681 aggcgcactc gaaccgcggc gcgtgaccat ccgcgacgca cgtccactcg cggcggcggg
     1741 ggagctatcg ctggataaaa gcggcttcga acgcatcgaa catagaagcg cgctgaccga
     1801 cttcagcgac gacgccgcca tccgctcgat ctactacagc gaatccgaac aggtcctgct
     1861 caaggcgacc ggcgcggaga aggtcgtggt attcgatcac accctgcgcg acagcttgag
     1921 tggctcgcgg gccaccgcgt ccttgcgcga gccggtacgg cgcgtgcaca acgaccagac
     1981 gttcgtctcc gggccgcgtc gcgtgcgaga ccatctgccc gccgatgaag tcgcgcaacg
     2041 cctcaagcac cgctttgcga tcatcaacct gtggcgcccg ctcgatgtag tggagcagct
     2101 accccttgcg ctctgcgacg cacgctcgat cgcagcaagc gatctggtgc caagcgatct
     2161 cgtgtacaag gacaaagtcg gtgagacttt ttctttcacg tataaccccg cgcatcggtg
     2221 gtattacttc ccgaagctac ggcccgacga agcgctgctg ctcaagatct atgactcccg
     2281 cgacgacggc acggcccgtc taaccg
//
LOCUS       DATGBK010000471         1738 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_214145, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000471 DATGBK010000000
VERSION     DATGBK010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214145"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..1724
                     /locus_tag="VKJ77_06770"
     CDS             87..1724
                     /locus_tag="VKJ77_06770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding domain-containing protein"
                     /protein_id="HMC45009.1"
                     /translation="MARIVPDDWKNMEATGAAVRELDTLALLAKLPDDYTVYHGVHWT
                     RINEGFSVFGEADFVVVAPSGRVLVIEQKAGFLRETPAGLMKVYMQKERNVAIQLART
                     LENLHRRFTAAFGAGTYRIEELLYCPDYTVKDASIAGVPEARIVDASRKGKLPSVVLD
                     ILPPNEPRFEAAARIHHFLSDELALTPDTNALVGQADMLVTRLSGGLATWARRLEFQP
                     FRLRVIGTAGSGKTQLAVQVMRDAVAKGRSVLYVCFNRPLADHIRLVAPPEARIANYH
                     QLSASVTRDAGTPPDFSQPNVFATLEERFANVEIAEHWKFDVLIVDEGQDFQAAWVDA
                     LARLLKPDGAWWWLEDPMQNLYFRDPVPLPGWTTLRETTNYRSPRDLLAYIRRIVGRD
                     VRLDAGSPFDGSEVSLSTYENGHPDEVIEATKRAITQALALGYRKQDIAVLSFRGREG
                     SVLTSVDQLGPHRLRSFTGSYDLFGNPEYREGDVLLESIYRFKGQSAPCVILTEVDFD
                     TFDEQVARKFFVGATRATMKLIVVASERAALAFNQQH"
BASE COUNT          320 a          544 c          551 g          323 t
ORIGIN      
        1 cccggatccg gcttgaatcc ggcctggatt cggcttcatt caggcacttt ccggcactca
       61 tacgcacata ggcgcgaagg cgaagcatgg ctcgaattgt ccccgacgac tggaagaata
      121 tggaagcgac tggcgctgcc gtgcgtgaac tcgacacgct ggcgctgctc gcaaaactcc
      181 ccgacgacta caccgtgtat cacggcgttc actggacccg catcaacgaa ggtttttcgg
      241 tgttcggcga agcggacttc gtggtggtcg cgccgtcggg ccgggtgctg gttatcgaac
      301 agaaggcggg gttcctgcgc gagacgcccg cgggcctgat gaaggtctac atgcagaaag
      361 agcgcaacgt cgccatccag cttgcacgga cgctcgagaa cctgcaccgt cgcttcacgg
      421 ccgcattcgg cgcgggcacc taccggattg aagagctgct gtattgcccc gactacacag
      481 tgaaggacgc gtccattgca ggcgtgcccg aagcgcgcat tgtcgatgcc agccgcaaag
      541 ggaagctgcc gtctgtcgtg ctggatatcc tgccgcccaa tgagccgcgt ttcgaagctg
      601 ccgcgcgaat ccatcatttt ctctccgacg aactcgccct cacacccgat accaacgcgc
      661 tggtcggtca ggccgacatg ctggtcaccc ggctctcggg aggcctcgcc acgtgggcgc
      721 gccggctcga attccagccg ttcaggctgc gcgtgattgg tacggccggt tcgggcaaga
      781 cgcaattggc ggtgcaggtg atgcgcgacg cggtggcgaa gggccgcagc gtgctgtacg
      841 tgtgtttcaa ccggccgctc gccgatcaca tccgcctggt cgcgccgccc gaagcacgca
      901 ttgccaacta tcaccagctc agcgcaagcg tgacgcgcga tgccggtact ccgccggact
      961 tcagccagcc gaacgtattc gcgacgctgg aagagcgttt cgccaacgtc gagattgcgg
     1021 agcactggaa gttcgacgta ttgattgtcg acgaaggcca ggatttccag gcggcctggg
     1081 tggacgcgct ggcccgtttg ctgaagccgg acggtgcatg gtggtggctc gaagatccga
     1141 tgcagaacct gtatttccgc gaccccgtgc cgctgcccgg ctggaccacg ttgcgcgaga
     1201 ccacgaacta tcgcagtccg cgcgacttgc tggcgtacat ccggcggatc gtcggacgcg
     1261 acgtgcggct cgatgcgggc agcccgttcg atggttccga ggtcagtctc tccacctacg
     1321 aaaatggcca ccccgacgaa gtgatcgagg cgaccaagcg agcgatcacc caggcgctgg
     1381 cgctcggcta ccggaaacag gacatcgcgg tattgtcctt tcgcggacgc gaaggctcgg
     1441 tgctgacgtc ggtcgaccag ctcgggccgc atcgcttgcg cagcttcacg ggcagttacg
     1501 atttgttcgg gaatccggaa tatcgggaag gtgacgtgct gctcgaatcg atctaccggt
     1561 tcaaggggca atcggcgccc tgcgtgatcc tgaccgaagt cgatttcgac actttcgacg
     1621 agcaggtcgc gcgcaagttc tttgtcggcg cgacgcgtgc caccatgaag ttgatcgtgg
     1681 tggcgtccga acgcgcggcg ctcgccttta accaacagca ttgaccgccg ccatgaca
//
LOCUS       DATGBK010000472         4564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_29229, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000472 DATGBK010000000
VERSION     DATGBK010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4564
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29229"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1110)
                     /locus_tag="VKJ77_06775"
     CDS             complement(<1..1110)
                     /locus_tag="VKJ77_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010093147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HMC45010.1"
                     /translation="MSALFSPFTLRGVTLPNRIVVSPMCQYSAERGEATAWHMIHLGH
                     LALSGAGMLCLEATSVEPDGRITPGDLGLWDDVTEAALKPVIDAIRKYSHIAITMQIS
                     HAGRKASSAVPWEGGQLIAVSEGGWMPSAPSAIPHKEGETPPLALDAAGLIRIRDAFV
                     ATAKRAARLGVDALEVHAAHGYLLHQFLSPLANQRTDEYGGSLENRMRFPLEVFDAVR
                     AAFPADKPVGLRVSASDWVEGGWDLEQTIVFVKELQKHKVDWIDVSSGGVSPLQKIPL
                     SPGYQLPFAKAIKEATGVNTMGVGLITDPQHAEEIIESGEADLVALARALLYNPRWPW
                     HAAAQLGATVEAPPQYWRSQPREQKALFGDISFGQR"
     gene            complement(1275..1994)
                     /locus_tag="VKJ77_06780"
     CDS             complement(1275..1994)
                     /locus_tag="VKJ77_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008917952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase"
                     /protein_id="HMC45011.1"
                     /translation="MKREVLAIRHVYFEDLGSLELVLGDRGQLVRYLDVGRARIDAPD
                     PLDTSLMVVLGGPIGAYDDALFPHLNPLLAMLEKRIAAGLPTIGICLGAQLIARALGA
                     KVYPAAQKELGWKALTLTEAGRASALRHFEADGQPTPVLHWHGDTFDLPDGATRLAST
                     DLCANQAFSWGDHVLGLQCHPEVLVDRFETWLIAYPGEVAESGTTVTALRADTVRHGP
                     ALERAARKMFGEWLDRFEPAK"
     gene            complement(2192..2836)
                     /locus_tag="VKJ77_06785"
     CDS             complement(2192..2836)
                     /locus_tag="VKJ77_06785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HMC45012.1"
                     /translation="MSEGVYGEQATGRVTHGLLRLSTAMRSQAWEWAEGAGLTPTQGE
                     ILVLLMQRRGPMRLGEIARETALTAATTSDAVSTLEGKGLVEKRRALDDGRALAVRLT
                     ARGKTAAKKALVWPEFLSKAVGTLKADEQSQLYRSLLKTIRQLEVVQQIPPHRMCLSC
                     THLEASKNPKKTPHHCALLNIDMADTGLRLDCSVYEEGDLAKQKKNWKIFAQVA"
     gene            complement(3531..>4564)
                     /locus_tag="VKJ77_06790"
     CDS             complement(3531..>4564)
                     /locus_tag="VKJ77_06790"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="YbdK family carboxylate-amine ligase"
                     /protein_id="HMC45013.1"
                     /translation="DLTKAASDLMRLVKDEKIPGSITPEITESMIELSTGICTTHEQA
                     VTDLRAIRDTLVAAADHLNVGLCGGGTHAFQQWSDRQIFDTPRFQYLSELYGYLAKQF
                     TVFGQHVHIGCPDPDSALFLLHSMSRFIPHFIALSASSPYVQGVDTGFHSARLNSVFA
                     FPLSGRAPFTLTWDSFEEYFSKMVSTGVVNSMKDFYWDIRPKPGFGTIEVRVMDTPLS
                     VDRAAAIACYIQTLARYLLLDKPLTLKEDDYLVYTFNRFEACRFGLEGSCIDPQTGER
                     RTIAEDILATLDVIAPHADALGSNEALRQVGDIARSNMNDATWLRGVFDRERSLHEAV
                     RQQCLQWRE"
BASE COUNT          938 a         1397 c         1323 g          906 t
ORIGIN      
        1 gcgctgaccg aacgagatat cgccgaacaa cgctttttgt tcgcgcggct gcgagcgcca
       61 gtattgcggc ggcgcttcga cggtcgcacc cagttgcgcg gccgcgtgcc acggccagcg
      121 cggattgtag agcagcgcac gcgccaacgc gacgagatct gcctcgcccg actcaataat
      181 ttcttcggcg tgctgcgggt cggtgataag acccacgccc atggtattca cgccggtggc
      241 ttccttgatg gctttggcga acggcagttg ataacccggt gagagcggaa ttttctgcaa
      301 gggcgataca ccacccgacg acacatcgat ccagtccacc ttgtgtttct gcaactcctt
      361 cacgaacaca atggtctgct ccagatccca gccgccttcc acccaatccg atgccgacac
      421 acgcaggccg acgggtttat cggcgggaaa agcggcgcgc acggcgtcga agacttccag
      481 cggaaaacgc atgcgatttt cgagcgagcc accgtattca tcggtgcgct ggtttgctag
      541 cggtgagaga aactgatgca gcagataacc gtgagccgcg tgcacttcaa gtgcgtccac
      601 ccccaagcgc gcggcgcgct tcgccgtcgc cacgaaggcg tcgcgtatgc ggatcaggcc
      661 ggctgcatca agcgctagcg gtggcgtttc gccttcttta tgcggaatcg ccgacggcgc
      721 cgagggcatc cagccgcctt ccgaaacagc gatcaactga ccgccttccc agggcactgc
      781 gctcgacgct ttgcggccgg cgtggctgat ctgcatcgta atggcgatgt gcgaatattt
      841 tcgaatggcg tcgataaccg gcttgagcgc ggcttcagtc acgtcgtccc agaggccaag
      901 gtcgccgggc gtgatacggc catcgggctc gaccgaggtc gcttcgaggc agagcatgcc
      961 ggcgcccgag agcgcgaggt gtccgagatg gatcatgtgc caagcggtgg cttcgccgcg
     1021 ttcggccgag tattggcaca tcggagaaac cacgatgcgg ttcggtagcg tcacgcctcg
     1081 cagcgtgaag ggcgaaaaca gtgcgctcat ggggaggttt cccgaggaag gaaaaggggc
     1141 gttttagaat agcacttcgg ttttgtccct gctgacggca gacccgatcg cttgaccaat
     1201 aacacgggca cccctcgccg cctacttccc tgcttccgga ttcatggtgc gttaccttca
     1261 gttcgtctaa acctttattt ggctggctcg aagcggtcca gccattcgcc aaacatcttg
     1321 cgcgcggcac gttcgagcgc cgggccgtga cggacggtat cggcgcgcaa ggctgtcacg
     1381 gtcgtcccgc tttccgccac ttcgcccgga tacgcaataa gccaggtttc aaaacggtcg
     1441 accaggactt ccggatggca ttgcaagccc aggacgtgat cgccccaact gaaagcctga
     1501 tttgcgcaaa gatccgtgga tgcaagccgc gtggcgccat cgggaagatc gaaggtgtct
     1561 ccatgccaat ggagaactgg cgtcggctga ccatccgctt cgaaatgccg caaagcggaa
     1621 gcccgtcccg cctcggtcag cgtcaacgcc ttccagccga gctccttttg cgccgccgga
     1681 tagaccttcg cgcccagcgc ccgggcaatc aattgcgcac ccaggcagat gccgatagtc
     1741 ggcaaccccg ccgcaatgcg cttttccagc atggcgagca acggattcag atggggaaac
     1801 agcgcgtcat cataagcgcc gatcgggccg ccgaggacga ccatcaacga agtatcgagc
     1861 ggatcgggag cgtcgatgcg agcgcggccc acgtcgagat aacgcaccag ttggccacga
     1921 tcgcccagca caagttccag gctgccgaga tcttcgaaat agacgtggcg tatcgccagg
     1981 acttcacgtt tcatcggcgg tcacccagga aagccggcaa gctgagatca gcgcacgcgg
     2041 catcaggcgg cgcacacaaa ggagaagcac ggtcgagcag ccagcgcacc gccaacgggc
     2101 gcgcggctcg aatagtctaa ccgacaccgc cgtgcttcgc gttcaaggcg cgaagcacgg
     2161 acggggaacc tgaagcttca ggcagcgacg cttacgcgac ctgcgcgaag atcttccagt
     2221 tcttcttctg cttggcgaga tcgccttctt cgtataccga acaatcgaga cgcaggccgg
     2281 tatcggccat gtcgatgttc agcaacgcgc agtgatgcgg cgtcttcttc gggttcttgc
     2341 tcgcttcgag gtgcgtgcag ctcaggcaca tgcgatgcgg cggaatctgc tgcaccactt
     2401 cgagttgtcg aatggtcttg agcaggctcc ggtacaactg cgactgctca tcggctttca
     2461 acgtaccaac tgccttcgac aagaactccg gccataccag cgccttcttg gctgccgtct
     2521 ttccgcgtgc ggtcaggcgt acagccagcg cgcgcccgtc gtccagcgca cggcgctttt
     2581 cgaccagacc cttgccttcc agcgtgctga cggcatcgct cgtggtcgcg gcggtcaacg
     2641 ccgtttcccg tgcgatctcg ccaagccgca ttggaccgcg ccgctgcatc agcagcacga
     2701 gaatttcgcc ttgggtcggc gtcaagcccg caccctcagc ccattcccat gcctggctac
     2761 gcatcgccgt gctcaaccgc agcaagccat gggtcacccg ccctgtagcc tgctctccat
     2821 atacgccttc gctcatagtc gttcgcttcg tctttcttga tgcttatctg atggttcggc
     2881 aacggcttga aaaccggtaa aacgtcagac cccgctcgtt ttacccaagt cgctgcaggc
     2941 tcaatcgccg tcgtatccaa ccggcgaatc ctttcgtatc aactaccgtc tcaaaattcg
     3001 ggcgatcaaa ccgatgcagc tagttcgtcg tccggataag gacatctatg tttctccgcg
     3061 gcgcctgttc tagaccttcc agcgcttcat ttgtttcacc ggccgttgct tcctcccacc
     3121 ggtaaaaccg acattctaag cgactggaac caaacgtaca ccttagttat tcacaaaacg
     3181 gtgtggataa cacagtggat aaccacatta ttcgatgtgc gccgattctt gataaccccc
     3241 cggcgtgcag atccgccaaa ttgttatccc tcgaaacccc gcgcgatgca aggctccgca
     3301 ccgtacttat gcgcactcca aactgttgac tatgcggaga ttttatcggt tgtccacaga
     3361 attgcacgat gcttgttaac tactattacg aatgtatacg aagtcatgac agtaaaccgt
     3421 ggaggcagct tatcggcatc agccggaaaa aaaatgacga aaaaaaacct gccgcggagc
     3481 aggttttttt ttcgatggca gtcaaaccgc tggagccaag gcggttccca tcattcccgc
     3541 cactgcagac attgctggcg cacggcttcg tgcagtgaac gctcgcgatc gaaaacaccg
     3601 cgtaaccagg ttgcgtcgtt catgttgctg cgggcaatgt cgccgacctg gcgcaatgct
     3661 tcgttcgaac caagcgcgtc tgcgtgaggc gcgatcacgt cgagcgtagc caggatgtct
     3721 tcggcgatcg tgcggcgctc gcccgtttgc ggatcgatgc aactgccttc caggccgaag
     3781 cggcaagctt cgaaccggtt gaacgtgtag acgagatagt cgtcctcttt cagcgtcagg
     3841 ggtttgtcga gcagcaggta gcgcgcgagc gtctggatgt agcaagcaat ggccgctgcg
     3901 cgatcaaccg acagcggcgt gtccatcacc cgcacttcga tcgtgccaaa acctggcttc
     3961 ggccggatgt cccaataaaa atctttcatg ctgttgacca cgcctgtgct gaccatcttc
     4021 gagaaatatt cctcgaagct gtcccacgta agcgtgaacg gtgcgcggcc agacagcgga
     4081 aatgcaaaga cagaattgag acgcgcggaa tgaaagccgg tatcgacacc ctgcacgtac
     4141 ggcgacgaag ccgacaacgc aatgaagtgc ggaatgaagc gcgacatgga atgcagcagg
     4201 aacagcgcgc tgtccgggtc cgggcagcca atgtgcacat gctggccgaa tactgtgaac
     4261 tgcttcgcga ggtaaccgta gagctcggaa aggtactgaa agcggggggt atcgaagatc
     4321 tggcggtcgc tccactgctg gaaggcgtgt gtgccaccgc cgcacagccc gacgttgagg
     4381 tggtcagcag cggccaccag ggtgtcacgg atcgcacgga ggtccgttac ggcctgttcg
     4441 tgcgtcgtgc aaatgccggt ggacaactcg atcatgcttt cggtgatctc cggcgtgatg
     4501 ctgccaggga tcttttcgtc cttgacgagc cgcatgagat cggaggcggc cttggtcagg
     4561 tcgt
//
LOCUS       DATGBK010000473         3338 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_329682, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000473 DATGBK010000000
VERSION     DATGBK010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3338
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329682"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /locus_tag="VKJ77_06795"
     CDS             <1..631
                     /locus_tag="VKJ77_06795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HMC45014.1"
                     /translation="DNQAQAGQDAVQLMTVHAAKGLEFMAVFITGLEEGLFPHENSAQ
                     ESDGLEEERRLAYVAITRAKERLYLSFAQSRMLHGQTRYNIRSRFFDELPEGSLKWLT
                     PKVEAGARWGGRSDNAGWGRDWFARPDKERAAYADPDAGKPLPAFANSQRAADTGFKV
                     GQAVFHNKFGEGTVIGLEGAGADARAQVRFKRHGEKWLALAVAKLQAVE"
     gene            628..1419
                     /locus_tag="VKJ77_06800"
     CDS             628..1419
                     /locus_tag="VKJ77_06800"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004542217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008782 - adenosylhomocysteine
                     nucleosidase activity [Evidence IEA];
                     GO_function: GO:0008930 - methylthioadenosine nucleosidase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009164 - nucleoside catabolic process
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HMC45015.1"
                     /translation="MTASVSRLGIMAALPQELGDLIESMHAAGEVRTEIIGRREYHVG
                     IAHGVPCVVTLARVGKVAAAATASALIHVFGVNAIVFTGVAGGVRKDVRVGDIVIGET
                     LMQHDLDASPLFPRFEVPLLGMARFPGDATLNAALAEACRAFLADEHTALEARFDVHP
                     PRLHRGLIVSGDRFVSSHDEVDALRAALPDALAVEMEGAALAQVCFEHGVACSVVRTV
                     SDTADADAPESFLEFLHALGGTYSSGILRRFLSAWDSRDDVRSPS"
     gene            1760..1984
                     /locus_tag="VKJ77_06805"
     CDS             1760..1984
                     /locus_tag="VKJ77_06805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45016.1"
                     /translation="MTETTPDSSRAQRAMSANAARVIETTRRAWLAAAAQPIGNISNL
                     ATQPRPPWFSRRPIVANLALAMNFWSTRPL"
     gene            1981..2496
                     /locus_tag="VKJ77_06810"
     CDS             1981..2496
                     /locus_tag="VKJ77_06810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45017.1"
                     /translation="MIATPSPLARSVSPATVIDASDAFDIPDQRMHDASRFPLVRLRR
                     RAVQPGYAFGWGTEMQRLLSLKTPFVIVSDHDADETADDTRLRSAWLRSHRETFALFC
                     RGFIVIEPRIEARASTREAVRAATQGSGVRMVVVSSMRVAGELAPVLLKHSVSDLEKS
                     RSTDKPRLQMP"
     gene            2690..>3338
                     /locus_tag="VKJ77_06815"
     CDS             2690..>3338
                     /locus_tag="VKJ77_06815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase N-terminal
                     domain-containing protein"
                     /protein_id="HMC45018.1"
                     /translation="MPTYREAHRRSIDDPETFWGEQARRIHWETPFEQVLDRSNPPFA
                     RWFVGGKTNLCYNAVDRHLAARAQQNALVYVSTETGIERRYTYAELHAEVNRMAAVMR
                     SLGVKQGERVLIYLPMIPEALFAMLACARLGAIHSVVFGGFAAPSLAARIDDATPVLI
                     VTADAGARAGKVIDYTPLVDEALARATHKVPKVLLIDRQLAPQRLQAPYLVSYEPL"
BASE COUNT          586 a         1023 c         1074 g          655 t
ORIGIN      
        1 cgataaccag gcgcaagccg gtcaggacgc ggtgcaactg atgacggtgc acgctgccaa
       61 gggccttgaa ttcatggcgg ttttcatcac gggcctggaa gaaggcctgt tcccgcacga
      121 gaacagcgcg caggaaagtg atggactcga agaggaacgc cggctggcgt acgtggcgat
      181 cacgcgggcg aaggagcggc tgtatctgtc gtttgcgcag agccggatgt tgcatggcca
      241 gacgcgctac aacattcgtt cccgtttctt cgatgaactc ccggaaggtt cgctcaagtg
      301 gctgacaccg aaggtcgagg cgggcgcgcg ttggggcggc cggtcggata acgccggctg
      361 gggccgtgac tggttcgcgc ggcccgacaa ggaacgcgct gcatacgcag atcccgatgc
      421 cggcaagcca ttgccggcgt tcgccaacag ccagcgcgcc gccgacactg ggttcaaagt
      481 cggtcaggcc gtgtttcaca acaagtttgg cgaaggcacg gtgatcgggc ttgaaggggc
      541 gggcgcggat gcccgtgcac aagtccgctt caagcgacac ggcgagaagt ggctcgcgct
      601 ggcggttgcg aagttgcagg cggtggaatg accgcgagtg tgagccgtct cggcatcatg
      661 gccgcgttgc cgcaggaact gggtgacctg atcgaatcga tgcacgcggc cggtgaggtg
      721 cgtacggaaa tcatcggccg gcgcgagtat cacgtcggca ttgcgcatgg ggtgccgtgc
      781 gtggtgacgc tcgcgcgcgt cggaaaggtg gctgcggcgg cgaccgcgag cgcgttgatc
      841 cacgtgttcg gcgtgaatgc cattgtgttc accggcgtgg ccggcggcgt gcggaaagac
      901 gtgcgggtag gcgatatcgt gatcggtgaa acactgatgc agcacgatct cgacgcgtcg
      961 ccgttatttc cgcgctttga agtgccgttg ctgggcatgg cgcgctttcc cggcgatgcc
     1021 acgctgaatg ccgcgctggc agaagcatgc agggcatttc ttgccgatga acatactgct
     1081 ttagaggcgc gttttgatgt gcacccgccg cggttgcatc gcgggttgat cgtgagcggc
     1141 gaccgatttg tttccagtca cgacgaggtc gatgcgctgc gcgcagcgtt gcccgacgcg
     1201 ctggcggtcg agatggaagg cgcggcgctc gcgcaagtgt gtttcgagca tggtgttgca
     1261 tgctcggttg tgcgcacagt ctcggatacc gccgatgccg acgcgcctga atccttcctt
     1321 gaattcctgc atgcgctagg gggtacctat tcgtcgggga tcttgcggcg gtttttgtcc
     1381 gcgtgggatt ccagggacga cgtacgtagt ccttcctgag catggctatg cgtcgggcat
     1441 tcggcgactg tctctggccg cgtgggcttg cacaggcgac gcgcgtcttc ccttcctgaa
     1501 aaccgccgtc tttagcgccc ggcaattttt tcagccaagc ggcgcgttct gcctcggttc
     1561 taaactgaaa gtaacagcga aacttgtcgc gacctcatat gcgtcgtgtc gccacggcag
     1621 ggcgagccac ccgtgccgtc tatccacacc ctcgtcttct ccgcctctcg tctatctccc
     1681 tccggcttgc tccccaaaat tctctcttgt aagtgagaat gattcgcaat tacaatgttc
     1741 gagacgacag gaggtccaca tgaccgaaac gacgcccgac tccagccggg cacagcgcgc
     1801 aatgtccgcg aacgccgcac gggtgatcga gaccacgcgc cgcgcatggc tcgccgcagc
     1861 ggcacagccc atcggcaata tcagcaatct cgccacgcag ccccggccac cctggttttc
     1921 acgtcgtccg atagtcgcaa accttgcatt agccatgaat ttctggagta cgagaccgct
     1981 gtgattgcta ccccctctcc cttggccagg tccgtcagcc ccgccaccgt tattgacgcg
     2041 tccgacgcgt tcgatattcc cgatcagcgc atgcacgacg ccagccgctt tccgctcgtg
     2101 cgcctgcgcc gacgcgcagt gcagccgggc tatgcgttcg gctggggcac cgagatgcag
     2161 cggttgttat cgctgaagac gccctttgtg atcgtgtccg accatgacgc cgatgaaacc
     2221 gccgatgaca cgcgcctgcg cagcgcatgg ctgcgttccc accgcgaaac gttcgccctt
     2281 ttttgccgcg gattcattgt gatcgagccg aggatagaag cgcgggcgtc gacgcgggaa
     2341 gccgtgcgag ccgcgacgca gggcagcggc gtgcgaatgg tcgtggtgtc cagcatgcgt
     2401 gtggccggtg aacttgcgcc cgtgctgctc aagcattcgg ttagcgatct ggagaaatcc
     2461 cgatcaaccg ataagccgcg cttgcagatg ccgtaagggc gcatcgcggc ttgtgtttga
     2521 acaatggccc gcgacgtggc ggaacctgtc acccggcgct ctactcaggg ccgtccctct
     2581 ctagcagcgc cccccggcct gaactatgct caggagcaat tcgcttgtcg cctgaagctg
     2641 attcaggcgt ggcgttccgc taccagacag ggttcagaca ggggttcgaa tgccgactta
     2701 tcgtgaagct catcgccgtt cgatcgacga tccggaaacg ttctggggcg aacaggcgcg
     2761 gcgaatccat tgggaaacgc cgttcgagca agtgcttgat cgcagcaatc cgccgttcgc
     2821 gcgctggttt gtcggcggca agaccaatct ctgctacaac gccgtcgacc ggcatctcgc
     2881 tgcccgcgct cagcaaaacg cgctcgttta tgtatcgacg gaaacgggca tcgagcggcg
     2941 ctacacctat gccgagctgc acgccgaagt gaaccgcatg gccgcggtca tgcgctcgct
     3001 cggcgtgaaa cagggcgagc gtgtcctgat ctatctgccg atgatccccg aagccctgtt
     3061 cgcgatgctg gcgtgtgccc ggctcggcgc aatccattcg gtcgtattcg gcggcttcgc
     3121 ggccccgagc ctggcggcgc gtatcgatga cgccacgccc gtgctgatcg tcaccgccga
     3181 cgccggtgct cgggcaggca aggtgatcga ttacacgcca ctcgtggacg aagcgctggc
     3241 acgcgccacg cataaggtgc cgaaggtact gttgatcgac cgccagctcg cgccgcaaag
     3301 attgcaggcg ccgtatctcg tttcctacga gccgttgc
//
LOCUS       DATGBK010000474         4099 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_5471, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000474 DATGBK010000000
VERSION     DATGBK010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4099
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5471"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..727
                     /locus_tag="VKJ77_06820"
     CDS             <1..727
                     /locus_tag="VKJ77_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="group II intron maturase-specific
                     domain-containing protein"
                     /protein_id="HMC45019.1"
                     /translation="AGVMENGLVGATDEGAPQGGPLSPLLSNLMLDDLDRELERRGLR
                     FVRYADDSNVYVRSERAGQRVMAGLKAFLTGKLKLKVNEAKSAVARPHTRKFLGFTFS
                     DRVQVRRHIAPKALARFKDRIRELTQRTRGISVDQLIGALKRYLTGWRGYFGFCETPR
                     VLRKLDEWIRRRLRCFLWKQWKRGWTRFQELTARGVPRDLAAQTVGSPHGEWRCSCSP
                     ALNIALSNRYFRSLGLPSVGQVG"
     gene            complement(910..1329)
                     /gene="dksA"
                     /locus_tag="VKJ77_06825"
     CDS             complement(910..1329)
                     /gene="dksA"
                     /locus_tag="VKJ77_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019899 - enzyme binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HMC45020.1"
                     /translation="MTTKRLLTEDEIQKMADKDYMNEDQLAFFRVRLEQLQADILKNA
                     GQTTENLRETVIVPDPADRATIEEEHALELRTRDRERKLLKKVQQSLARIESGDYGWC
                     EETGEPIGIPRLIARPTATLSLEAQERRELRQKLFGD"
     gene            complement(2085..3164)
                     /locus_tag="VKJ77_06830"
     CDS             complement(2085..3164)
                     /locus_tag="VKJ77_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013586839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HMC45021.1"
                     /translation="MIPLTILTGFLGSGKTTLLKRILNDKHGMKIAVIENEFGEENID
                     NEILVQETNEQIIQMSNGCICCTIRGDLARALEDLADRKKAGTLNFDRVVIETTGLAN
                     PGPVAQTFFMDNTIADEFLLDAIITLVDAKHANHQLDEHEVVQRQVGFADRLFITKSD
                     LVDAAALDALKHRLVHMNPRAAIKVVNFGEADIKEIFDLRGFNLNSKLEIDPDFLAED
                     DHDHDHAEHDHAHDNDHDHATCGHDHSHDHEHGHANHHHAHHDDKIKSFVFRSDRAFD
                     PNRLEDFLGGILQIYGERLLRYKGVLYMKGVDRKVVFQGVHQMMGSDLAAKWQPIEKK
                     NSKMVFIGIELPQDLIIDGLTACLV"
     gene            complement(3349..>4099)
                     /locus_tag="VKJ77_06835"
     CDS             complement(3349..>4099)
                     /locus_tag="VKJ77_06835"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011204773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HMC45022.1"
                     /translation="TGCPNVYERSDVSIRQKEGLEQITGVLAGDPPPATLIANEGGVR
                     YHIDVERGHKTGFYIDQRDNRALVRQYAGDRDVLNCFCYTGGFSLAALKGGAKRVVSI
                     DSSGDALALAQQNVTANGFDPQRAEWLDADAFKTLRRLHEDGERFDLIVLDPPKFAPS
                     REHVDRAARAYKDINLTGFKLLRPGGLLFTYSCSGAIDADLFQKIVAGAAADAKVDAR
                     ILKRLGAGVDHPLLTAFPEGEYLKGLLLQIA"
BASE COUNT          740 a         1179 c         1249 g          931 t
ORIGIN      
        1 ggcgggtgtg atggaaaacg ggctggttgg tgcaacggac gaaggggcgc cgcaaggcgg
       61 tccgctatca ccgttgttat ccaatctgat gcttgacgat ctcgaccggg agcttgagcg
      121 gcgcggtcta cgcttcgtga ggtacgccga cgacagtaac gtctacgtac gcagtgaacg
      181 cgcgggccag cgggtgatgg cgggcctcaa ggccttcctc accggcaagt tgaagctgaa
      241 ggtcaacgag gcgaaaagcg cggtcgcgcg gccgcacacg cgcaaattcc ttggattcac
      301 cttctcggat cgagtacagg tcagacggca cattgcgccc aaggcgcttg ctcgcttcaa
      361 ggatcgaatc cgggagttga ctcaacgcac gcgcgggatc agcgtcgacc aattgatcgg
      421 tgcgctgaaa cgatatctga cgggctggcg tggctacttc ggtttctgtg aaacaccccg
      481 cgtgcttcgg aaactggatg agtggattcg tcgtcgtctt cgctgcttcc tctggaagca
      541 atggaaacgt ggctggactc gcttccagga actgaccgcg cggggggtgc cccgagacct
      601 tgctgcccag acggtgggtt cgccgcacgg tgaatggcgc tgcagttgca gtcctgcgct
      661 caacatcgcg ctgtcaaatc gttacttccg atcgcttgga cttccatcgg ttggccaggt
      721 cgggtaaccg atccgaaccg ccgtgtacgg acccgtacgc acggtggtgt gggaggggtc
      781 gggccgcgag gcctgcccct atcccgattt cccgcgtgtt ttcaagcgct ttctaatctc
      841 ttcgatacaa atcccggccg gcaggtttcc cgccgcggcc caggccgcag cgtatgccgc
      901 tccggccgat cagtcgccga acagcttctg gcgaagttcg cgtcgttcct gcgcttcgag
      961 cgagagcgtt gccgtcgggc gcgcgatcag gcgcggaatg ccgatcggct cacctgtttc
     1021 ctcgcaccag ccgtagtcgc cggactcgat acgcgccagc gactgctgca ctttcttcag
     1081 cagcttgcgt tcgcggtcgc gcgtgcgcag ttcgagcgcg tgctcttcct cgatcgtcgc
     1141 gcgatcagcc gggtccggaa cgatgacggt ttcccgcagg ttttccgtcg tctggcccgc
     1201 attcttgaga atgtcggcct gcaactgttc cagtcggacc ctgaagaacg cgagttgatc
     1261 ctcgttcatg taatccttgt cggccatctt ctggatttcg tcttcagtca acaatcgttt
     1321 cgtcgtcatc tggcttgctt cttcaatgtg gggcgatgtc gttcgccatc ttcgcggtcg
     1381 ctcgccgcgc tcgccgccgc cgtagttcgg tttacccgca cttcgacgat actcgccaac
     1441 aattactgca tgcacttact acgctaaacg ggctgcgact ctcgcggctt gacggcacca
     1501 cgcggggcca attccatcta gaccactgca tctagatcga ttcgtctgga ctgattttca
     1561 agcgattcga cggtgcccga tgttcggaac aacaccttac ttttcacttc cactctctcg
     1621 ccaggtttgc aacacaacgg tgaattgttg ctcgcagcgc cggcgggagc gcttttcaga
     1681 cttttgtcgg tagcatttgc gccgggcttt gtagtcaagg cttggcggtg taccggcttc
     1741 tccagtgggg ctgtattgta actgaatcgc aaatgcgcac tacacccaag caaaacactg
     1801 gcgcaattcg ttcgttatct caaaaatata acgcgctgac gtttaaaaag cgatggttct
     1861 tggtgggcgt gaacacatat tgcaacgacg ttcatcgccg aaaagcgccg gctccctaag
     1921 gcgcagcgat tttagtctcg ctaatgcgtc gcaatggttg cgcttcagga gagaaatagc
     1981 gagaactgtg ccgaaaatgg aggggcggat tgaacggtgg cgcgaagccg cggtgtgagg
     2041 gcttcgcgtt tcgccggttt cttcgatttc gtcagcgtct tcgatcagac caggcaggcg
     2101 gtcagcccgt cgatgatcaa atcctgcggc aattcaatgc caatgaacac catcttgctg
     2161 ttcttctttt cgatcggttg ccatttcgcg gcaagatcgc tgcccatcat ctgatgcacg
     2221 ccctggaaca cgaccttgcg atcgacgccc ttcatataca gcacgccctt gtagcgaagc
     2281 aggcgttcgc cgtagatctg caggatgccg ccgaggaaat cttcgagccg gttcggatcg
     2341 aaggcgcggt cgctgcggaa tacaaacgac ttgattttgt cgtcgtgatg cgcgtggtgg
     2401 tgattcgcgt ggccatgctc atggtcgtgg ctgtgatcgt ggccgcaggt ggcgtggtcg
     2461 tgatcgttgt cgtgcgcatg gtcgtgctcg gcgtgatcgt ggtcgtgatc gtcttccgcc
     2521 aggaaatccg gatcgatttc gagctttgag ttcaggttga agccgcgcag atcgaagatt
     2581 tccttgatgt ccgcttcgcc gaaattcacc accttgatcg cagcgcgcgg gttcatgtga
     2641 acgaggcggt gcttcagtgc gtcgagcgcg gcagcgtcga ccagatccga cttcgtgatg
     2701 aacaggcggt ccgcgaaacc tacctggcgc tgcaccactt catgttcgtc gagctgatgg
     2761 ttggcgtgct ttgcatcgac cagcgtgatg attgcgtcga gcaggaattc gtcggcgatg
     2821 gtgttgtcca tgaagaacgt ctgagcgacc gggccaggat ttgcgaggcc ggttgtctcg
     2881 atcaccacgc gatcgaagtt cagcgtgcca gccttcttgc ggtcggcgag atcttcaagc
     2941 gcgcgcgcca ggtcgccgcg gattgtgcag cagatacagc cgttgctcat ctggatgatc
     3001 tgctcgttcg tttcctggac gaggatctcg ttgtcaatat tctcttcgcc gaactcgttc
     3061 tcgatcacgg cgatcttcat gccgtgcttg tcgttcagga tgcgcttgag caacgtggtt
     3121 ttgccgctgc cgagaaagcc ggtcaggatg gtaaggggaa tcatggtggt cgccctgttc
     3181 tttaaagtcg aaggatcgtg cggcatgttt tcgggctgcg ggcgtgatct gaaacgcctg
     3241 cgctacgctc gaaaacatgc ggtcggtcga ttattgaaac atatttgtca agcggacgct
     3301 ctgtgcaccc ctgaacgcgc gctgtccgaa gcgctcaact atgggcgatc acgcgatttg
     3361 caacaatagg cctttcaggt attccccttc gggaaacgcg gttaaaagcg ggtgatcgac
     3421 gcctgcgcca aggcgcttca ggatacgcgc gtcaactttc gcgtcggccg cggcgcctgc
     3481 cacgatcttc tggaacagat cggcgtcaat agcgcccgag cacgaatagg tgaacagcag
     3541 gccgcccggg cgcaacaact tgaagccggt caggttgatg tccttgtacg cacgcgcggc
     3601 gcggtccacg tgttccctcg aaggcgcgaa cttgggcgga tcgagcacga tcaggtcgaa
     3661 gcgctcgccg tcctcatgca agcggcgcaa ggtcttgaac gcgtcggcgt cgagccactc
     3721 ggcgcgttgc ggatcgaaac cgttcgccgt gacgttttgc tgggcaaggg ccagggcgtc
     3781 gccggaggag tcgatcgata ccacgcgttt tgcaccgcct ttcagagcgg ccagcgaaaa
     3841 accgccggtg tagcagaagc agttgagaac gtcgcggtcg ccggcgtatt gccgcacgag
     3901 cgcgcgattg tcgcgttgat cgatgtagaa gcccgtttta tggccccgtt cgacgtcgat
     3961 gtgataccgc acgccgcctt cgttcgcgat cagggtggcc ggtggcggat cgccggccag
     4021 cacgccggtg atctgttcga gcccttcctt ctgccgaatc gacacgtccg agcgttcata
     4081 cacgttcggg cagccggtt
//
LOCUS       DATGBK010000475         3823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_98191, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000475 DATGBK010000000
VERSION     DATGBK010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3823
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98191"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..553)
                     /locus_tag="VKJ77_06840"
     CDS             complement(<1..553)
                     /locus_tag="VKJ77_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC45023.1"
                     /translation="MDENLNFDTLAVRAGTLRSEFNEHSEAIFLTSSFVFKSAAHAAE
                     SFKNSEEAYTYSRFTNPTVAMFQNRLAALEGGEACMATASGMAAIMSVVMCSMQQGDH
                     LVSSKSLFGSTIGVFSQIFTKFGITTTFVDATNLDEWRAAVRPETKMFFLETPSNPLT
                     EIADIEAIGKISKEVGALFVVDNC"
     gene            complement(848..2395)
                     /gene="purF"
                     /locus_tag="VKJ77_06845"
     CDS             complement(848..2395)
                     /gene="purF"
                     /locus_tag="VKJ77_06845"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004544727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HMC45024.1"
                     /translation="MCGIVGVVSQTPVNQLIYDSLLLLQHRGQDAAGIATANGNNFHM
                     HKANGMVRDVFRTRNMRSLPGNVGIGQVRYPTAGSASSEEEAQPFYVNAPFGIILAHN
                     GNLTNWPQLKEEMFRIDRRHINTASDTEVLLNVFAHELQLSSSGLELDPAALFKAVSG
                     VHRRVRGSYAIVSLIAGYGLVAFRDPFGIRPLVLGKQETATGVEWMVASESVAVEGIG
                     FEFVRDVEPGEAIFIDNDGNLHSQQCAENPSLNPCIFELVYLARPDSCLDGVPVYNAR
                     LRMGDYLAEKIKRVLPDVPIDVVMPIPDSSRPAAMQVAAKLGVEYREGFFKNRYVGRT
                     FIMPGQAVRKKSVRQKLNAMAIEFKGKNVLIVDDSIVRGTTSHEIVQMARDAGAAKVI
                     FASAAPPVKYPNVYGIDMPTRGELVAHGRSDEEVARMIGADHLVYQDVADLKQAIRDI
                     NPALREFDASCFDGNYITGDIDSAYLDRLEKARLAPQAQSDRDAASEAMEGGVSRSQL
                     HLQLSVE"
     gene            complement(2534..3070)
                     /locus_tag="VKJ77_06850"
     CDS             complement(2534..3070)
                     /locus_tag="VKJ77_06850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014899946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HMC45025.1"
                     /translation="MFTSFDYAVMAVIGLSALRGMWRGLLAEVFGLIGWIAALLIAGR
                     FVGLVVPYIPAHWPGGALTQWLIAFLLIVAGVLVVSSVAGALLTRVTEVVGLRGIDRS
                     LGLLFGLVRGAILVVILVALAGLTELPQHDFWRNALFRPAAEQGVRELKPLLPDTLAA
                     YLRTTPDGPQDPPATPAQ"
     gene            complement(3077..>3823)
                     /locus_tag="VKJ77_06855"
     CDS             complement(3077..>3823)
                     /locus_tag="VKJ77_06855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HMC45026.1"
                     /translation="MLDPTLPEKQRARRRLVGALALVAAAVIILPMVLDSHPKPVTDD
                     ISIDIPARPAAPLPKTSHTDATDGGAVDSSADTQAGVAPDGPVAAPDNAAAVASKPDS
                     KSAAKPDPKQASKLVETQAQAKAAAPQPEAKPVAPPPAATAAKPPVDAPAATAAIPKP
                     NTPASPAGSRFVVQIGTFDDDTAAQGWVTKLKTAGVPAYIEHRKQADGTTRTLLRAGP
                     FADRTAASAALVKVRQAGLGGGSSNNASAN"
BASE COUNT          748 a         1221 c         1128 g          726 t
ORIGIN      
        1 agcagttatc gacgacaaac aacgcgccca cttccttcga tatcttcccg atcgcctcga
       61 tatccgcaat ctcggtcagc ggattcgacg gcgtctccag gaagaacatc ttcgtctcgg
      121 gacgcacagc ggcacgccat tcatcaagat tggtggcatc gacgaacgtg gtcgtgatcc
      181 cgaacttcgt gaagatctgc gagaacaccc cgatcgtcga tccgaacaaa ctcttcgaac
      241 tgaccagatg gtcgccttgc tgcattgaac acatcactac cgacatgatc gcggccatgc
      301 ccgacgcggt tgccatgcac gcctcgccgc cttccagcgc cgccaagcgg ttctggaaca
      361 tcgcgacggt cggattggtg aagcgcgagt acgtgtaagc ctcttcggag ttcttgaagc
      421 tctccgcagc atgcgcggcg cttttgaaca caaagctcga cgtcaggaaa atcgcttcag
      481 agtgctcgtt gaactcactg cgcaacgttc ctgcgcgcac ggcgagcgta tcgaagttga
      541 ggttttcgtc catgttcgtg ttttccattc ccatctattc catctattca ttagcccggc
      601 caaaaaaccg ggacgcaaaa aagcccgctt ctgcgtcagc atgagcgggc tcggtgcgga
      661 aaagcctgta gcgtcgccgg tgcgtggtcc agattcgcca ccggttcgct ttagctgttt
      721 cgggttccga ctcaagctaa acatctagcc cgttcatcaa aacccgcgtc cgcaagctga
      781 tctcaaatcg acgcaaagcc aatcctatca cgactgtcac gcactttcgc gcgccggagt
      841 tcactcgtca ctccaccgac aactgcaagt gcaactgcga acgcgataca ccgccttcca
      901 tggcttcact cgcggcatcg cgatccgact gcgcttgcgg tgcaagacgc gccttctcca
      961 gacgatccag atacgccgag tcaatgtcgc cggtgatgta gttgccgtcg aagcacgacg
     1021 catcgaattc acgcagcgcc ggattgatgt cgcgaatggc ttgcttcaaa tcggcgacat
     1081 cctgatacac cagatgatcc gcgccgatca tgcgcgccac ttcctcgtcc gaacggccat
     1141 gcgcgaccag ttcgccgcgc gtaggcatgt cgatgccata cacgttcggg tacttcaccg
     1201 gcggcgcagc ggacgcgaag atcaccttgg cggcgcctgc atcgcgcgcc atctgcacga
     1261 tttcatgcga tgtcgtgccg cgcacgatgg agtcatcgac gatcagcacg ttcttgccct
     1321 tgaactcgat cgccatcgcg ttcagtttct ggcgcaccga cttcttgcgc acagcctggc
     1381 ccggcatgat gaaggtgcgg ccaacgtagc gattcttgaa gaaaccttcg cgatactcca
     1441 cgcccagctt cgcggccact tgcatggcgg cgggacgcga tgaatcgggg atcggcatga
     1501 ccacgtcgat aggcacgtcc ggcagcacgc gcttgatctt ctcggcgagg taatcgccca
     1561 tgcgcaggcg cgcgttgtag accggcacgc cgtcgaggca cgaatcggga cgcgcgagat
     1621 acacgagttc gaagatgcag gggttcaggc tcgggttctc ggcacattgc tggctgtgca
     1681 ggttgccgtc gttatcgatg aaaatggctt cgcccggctc cacgtcacgc acgaactcga
     1741 agccgatacc ttcaaccgcc accgattccg acgccaccat ccattccacg cccgtcgcgg
     1801 tttcctgctt gccgaggacc agcggacgga tgccgaacgg atcgcggaaa gcaacgaggc
     1861 cataacccgc gatcagcgaa acgatcgcat aagaaccccg tacccgccga tgcacaccgc
     1921 tcaccgcctt gaacagcgcg gccggatcga gttccaggcc ggagctggac aactgcagtt
     1981 catgggcgaa gacgttgagc aggacttccg tatcggatgc ggtgttgatg tgccggcgat
     2041 cgatccggaa catctcttcc ttcaactgcg gccagttcgt gaggttgccg ttgtgggcga
     2101 ggatgatgcc gaatggcgcg ttcacgtaga acggctgggc ttcttcctcg ctcgatgccg
     2161 atccggccgt cggataccgc acctggccaa tgccgacatt acccggcagg ctgcgcatgt
     2221 tgcgcgtgcg gaacacgtcg cgcaccatgc cgttggcctt atgcatgtgg aagttattgc
     2281 cgttagccgt tgcaatgcca gccgcgtcct gcccgcgatg ctgcagcagc agcaagctgt
     2341 cataaatcaa ctgattaacg ggagtctggg aaactacgcc tacgatgccg cacatggcat
     2401 ggtccttcaa agagtcgaaa cgggtccaaa aggcgtatcg gtgcaacgaa tgcaggcggc
     2461 ccctggtggg gtgatcagac tgcaggatgt tgcgccgagc cgtagcaagg ttctcgggta
     2521 gcgggccagg acgtcattgc gcaggcgtgg cgggcggatc ttgcgggccg tccggcgtgg
     2581 tgcgcaggta cgcggcgagc gtatcgggaa gcagcggttt cagttctcgc acaccttgtt
     2641 cggccgcggg ccggaacaac gcgttacgcc agaaatcgtg ttgcggcagt tcggtcaagc
     2701 ccgcgagggc gaccaggatc actaccagaa tggcccctct cacgaggccg aacaaaagtc
     2761 caagcgaccg gtcgataccg cgcagcccga ccacttcggt cacgcgcgtc aacaacgcgc
     2821 cagccacgct cgacaccact agcacacccg cgacaatcag caaaaacgca atcagccact
     2881 gcgtcagcgc cccgcccggc cagtgcgccg gaatgtaagg cacgaccaaa ccgacaaaac
     2941 gccccgcgat caacagtgcc gcgatccagc cgatcaagcc gaacacttcg gccagcaggc
     3001 cgcgccacat gccgcgcagc gcggagaggc cgatcacggc catcaccgcg tagtcgaaac
     3061 tcgtaaacat ctacagctag ttcgccgacg cgttgttgct gctgccaccg cccagtccgg
     3121 cttgccgcac cttgaccagc gccgccgatg cagccgtccg gtcagcgaac ggtccggcac
     3181 gcaacagcgt gcgagtggtg ccatcagcct gtttccgatg ttcgatatat gcgggcactc
     3241 ccgctgtctt caacttggtc acccagcctt gggccgcagt gtcgtcatcg aaggtaccga
     3301 tctggaccac gaatcgactt cccgccgggg aggccggtgt gttcggtttc gggatcgctg
     3361 cggtagctgc aggcgcgtcc accggcggct tggcggccgt tgctgcgggc ggcggtgcca
     3421 ccggcttcgc ttcgggctgc ggtgcggcgg ccttggcctg cgcttgtgtt tctacgagtt
     3481 tagaggcttg cttcgggtcg ggttttgcag cggatttcga gtcgggcttt gaagccaccg
     3541 ccgccgcatt gtccggagcc gccacagggc cgtccggcgc tacaccggct tgcgtatctg
     3601 ctgacgaatc aaccgcgccg ccatccgtcg cgtcggtatg actcgtcttg ggcaaaggcg
     3661 ccgccgggcg tgccgggata tcaatggaga tgtcgtcggt gacaggtttc ggatgcgaat
     3721 ccagcaccat tggcaggatg atgaccgctg ccgcgaccag cgcgagtgcg ccgaccagac
     3781 gccgccgcgc acgctgcttt tcgggcaggg tggggtcgag cat
//
LOCUS       DATGBK010000476         2317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_237260, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000476 DATGBK010000000
VERSION     DATGBK010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237260"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2001
                     /locus_tag="VKJ77_06860"
     CDS             <1..2001
                     /locus_tag="VKJ77_06860"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC45027.1"
                     /translation="QQRGMTGPVINKLIAGITAATNAREVAEQAACAPSVSTPAPAQP
                     VKPQPAAASAGATAKTRLGAAAPTPQEVNRTVTLYNQGRVVEAATLARSLAERFPTHA
                     PSWRAFGLAMHRLGRMREAIEPLGRAIDLVPADHELRRILADSLRDQGLHTQSEAHCR
                     LIVEQDPQNAEAHRLLAMALQAQMRFGEAEASGRRAVELAPMSSSAGSVLGVILIDQG
                     LLAEAEVELRRTLALSPADPKLHENLLFCMNHNDSVGAHALFAQHLQFGEQCERQLRQ
                     RWKKHLNARDPERKLNVGFVSGDLCHHAVATFVEPLLPHLAKDPALKLHVYYNHTLQD
                     QTTLRLKQHVRNWNDIAGLSDEALADKIRADRIDVLIDLSGHTGRNRLLTFARKPAPL
                     QASWIGYPGTTGLQAMDYYLADRFLVPPGQAENQFTEKLAYLPACSVFSPYPASPPVN
                     GLPALRNGYFTFGSFNRVSKIRPATVALWAKLLRAIPDSRMLLGSMAPGGDYSKLIEW
                     FESEGIAQDRLDFRARSEEPVYLQQHHHVDLCLDTFPYAGGTTTMHATWMGVPTLTQS
                     GDTIPSRAGATVMSHAGLFGFIASDEDDFIAKGLAIASDLNALAGIRAGLREQFRTSP
                     LLNSQLIADSFSLVLRDMWRRWCAGQPAAPLEVRATGALDNR"
     gene            2001..>2317
                     /locus_tag="VKJ77_06865"
     CDS             2001..>2317
                     /locus_tag="VKJ77_06865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012734269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HMC45028.1"
                     /translation="MPLLQPNVLAEDTLSHPIRIVEPIVDERMYVTQPHLAPLDEFIP
                     YLEKIWQSKVLTNGGPFHQQFEKALCEYLGVKHLALFTNGTLALVTALQALRITGEVI
                     TTP"
BASE COUNT          429 a          756 c          690 g          442 t
ORIGIN      
        1 cagcagcgcg ggatgacagg cccggtcatc aataagctga tcgccgggat aacggccgcc
       61 accaacgcac gagaggtggc cgagcaagcc gcttgcgccc cgtctgtgag cacgcccgcg
      121 ccggcgcagc cagtcaagcc acaacctgct gccgcttccg ctggagctac cgcgaaaacc
      181 aggctgggcg ccgccgctcc tacaccgcaa gaagtcaacc ggaccgtgac gctctacaac
      241 caagggcgcg tggtcgaggc agcaacgctc gcacgctcgc tggcggagcg ttttccgacg
      301 catgcgccga gctggcgggc tttcggtctc gccatgcatc ggcttggcag gatgcgggag
      361 gcgatcgagc cgctgggccg cgccatcgac ctggtgcctg ccgaccacga gttgcgccgc
      421 attctcgccg actcattgcg ggaccagggt ctgcacacgc agtccgaggc ccattgccgg
      481 ctgattgtgg aacaagaccc gcaaaatgct gaagcgcatc ggctgctagc catggcgctc
      541 caggcgcaaa tgcgctttgg cgaagccgaa gcgagcggtc gccgcgcggt cgaactggcg
      601 cccatgtcgt cgtcggcggg gagcgtgctc ggcgtgattc tcatcgacca gggtcttctg
      661 gctgaagccg aggttgaatt gcggcgcacg cttgctttgt ctccggccga ccccaagctg
      721 cacgagaacc tgttgttttg catgaaccac aacgatagcg tgggtgcgca cgcgctattc
      781 gcccagcatt tgcagttcgg cgagcaatgc gagcgtcaac tgcgccagcg ctggaaaaag
      841 catctcaacg cccgcgatcc ggagcgcaag ttgaatgtgg ggtttgtatc cggcgacctc
      901 tgccatcatg ccgtcgcgac ttttgtcgag ccgctgctgc cccatctcgc gaaagatccg
      961 gccttgaagc tgcacgtgta ctacaaccat acgttgcagg atcagacaac cctccggctc
     1021 aagcagcatg tgcggaactg gaacgacatt gcgggcctga gcgatgaagc actcgcggat
     1081 aaaatccgcg cggatcgaat cgacgtgttg atcgatctct ccgggcacac tggccgtaac
     1141 cggttgctga ctttcgctcg caagccggct cctctccagg caagctggat cggctatccc
     1201 ggcacgaccg gtctgcaggc gatggattac tatctcgccg atcgttttct cgttccgccc
     1261 ggccaagcgg agaatcaatt caccgaaaag cttgcctacc ttccggcttg ctcggtgttc
     1321 tcgccctacc cagcctcgcc gccggtcaat ggcttgccgg cgttgcgcaa cggctatttc
     1381 acctttggca gcttcaaccg cgtaagcaag attcgcccgg ccaccgtcgc gctgtgggcc
     1441 aagctgttgc gtgcgatacc cgactcgcgc atgttgcttg gttccatggc gcccggcggg
     1501 gattattcaa agctgatcga atggttcgaa agcgagggca ttgcgcagga tcggctcgac
     1561 ttccgcgctc gctccgaaga gccggtttat ttgcagcagc accatcatgt cgacctgtgc
     1621 ctcgacactt ttccgtacgc cggcggcacg accaccatgc acgcgacctg gatgggtgtg
     1681 cccacgctca cgcagtccgg cgacacaata ccgagtcgcg ctggcgcgac ggtcatgtcc
     1741 catgccggcc tgtttggttt catcgcttct gatgaagatg acttcattgc caagggtctc
     1801 gcgattgcct cggacctgaa cgcgctcgcc gggattcgag caggcctgcg cgagcaattc
     1861 cggacatccc cgttgttgaa ttcgcaattg atcgccgaca gtttctcgct cgtgctgcgc
     1921 gacatgtggc gacgctggtg cgccggccag cccgcggcgc cgctcgaagt gcgcgccacg
     1981 ggcgcgctgg acaaccgttg atgccgttgc tgcaacccaa tgtgctcgcg gaggatacct
     2041 tgagccatcc cattcgcatc gttgagccga tcgtcgacga acgcatgtac gtcacacaac
     2101 cgcatcttgc gccgctcgac gaattcattc cctatctgga aaagatctgg caaagcaagg
     2161 tcctgaccaa cggcggaccg ttccatcagc agttcgagaa ggcgctctgc gagtaccttg
     2221 gcgtcaagca cctggcgctg ttcaccaacg gcacgctcgc gcttgtcacc gcactccagg
     2281 ccctgcgaat cacgggcgaa gtgatcacga cgccgta
//
LOCUS       DATGBK010000477         1618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_237282, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000477 DATGBK010000000
VERSION     DATGBK010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237282"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VKJ77_06870"
     CDS             <1..309
                     /locus_tag="VKJ77_06870"
                     /inference="COORDINATES: protein motif:HMM:NF024216.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HMC45029.1"
                     /translation="IGMNAMSDLNKAFACSVPYLKLWGIVAGGWQMARAAQISAEKIA
                     AGSSDEFYKAKLITARFYADHILSQSSYLKHQIVAGSSSVMTMTESQYGLDRAALVTA
                     "
     gene            311..>1618
                     /locus_tag="VKJ77_06875"
     CDS             311..>1618
                     /locus_tag="VKJ77_06875"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HMC45030.1"
                     /translation="MNPIENGNGAVTAAPLVETADREGVRVITLNNKPANAISFALSA
                     QLVRAIDAATADTGVAAIVFTGANGLFSNGADINDFSTEPTAETKTARDVMAAIERST
                     KTCVAAIDGNALGGGFELALVCDYRVATKRSKLGLPEIKLGLLPGAGGTQRLPRLVGA
                     QEALQIMLKGDMIAAQDAKKKGILDETVDGDAVDAAIAIVEKFAATQPKRRVSERPPS
                     LGIVGMGLFATPFVVAQAHKMVPPEDNGGFAAHKLIDAVAASLELDFAHGLAREARLF
                     EELIRSAPSAALQHLFFAERELGKIPGLAPTEPLDIKTAGVIGAGTMGTGIAITFASA
                     GIPVIVIEPSDEQIEKSKTMVFGMFAHQVQRGRLTQEEAWKRGQSISWESDYNELATV
                     DVVVEAVFENMDVKKQVFTKLDAICKPAAILASNTSTLDIDAIA"
BASE COUNT          350 a          465 c          496 g          307 t
ORIGIN      
        1 atcggcatga atgcgatgag cgatttaaac aaagcgtttg cgtgctcggt gccctatctc
       61 aagctgtggg gcatcgttgc gggcggttgg cagatggcgc gcgcggcgca aatttccgct
      121 gaaaaaatcg cggcgggcag cagcgacgaa ttctataagg ccaagctgat cacggcgcgc
      181 ttctacgcgg accatatctt gagccaatcg tcgtacctca aacatcagat cgtcgccggc
      241 tcttcgtcgg tgatgacgat gaccgaatcg caatacggcc tggatcgcgc ggcgctggtg
      301 accgcgtagc atgaatccga tcgaaaacgg caacggcgcc gtcaccgccg cgccattggt
      361 cgaaaccgcg gaccgcgagg gcgttcgcgt tattacgctc aacaataaac cagcaaacgc
      421 gatctcgttt gccttatcgg cacagctcgt tcgcgctatc gatgcggcaa ctgcggatac
      481 gggcgttgcg gcgatcgtgt tcaccggggc aaacgggttg ttcagcaacg gcgccgacat
      541 caacgatttt tccaccgaac cgacggccga aacgaagacg gcgcgcgacg tgatggcggc
      601 gatcgaacgc agcacgaaaa cctgcgttgc ggcaattgac ggcaacgcgc ttggcggcgg
      661 ctttgagtta gcgctggtgt gcgattatcg cgtcgccacc aaacgctcga agttggggct
      721 gccggaaatc aagctcggtt tattgccggg tgcgggcggc acgcaacgct taccgcgact
      781 cgtcggcgca caagaagcgc tgcaaatcat gctcaagggt gacatgatcg cggcgcaaga
      841 cgcgaagaag aagggcattc tcgacgaaac cgtcgatggt gacgccgtcg atgcggcgat
      901 tgcgatcgtt gaaaaatttg ctgcaacgca gcccaaacgg cgcgtgtccg aacggccgcc
      961 gtcgctggga atcgtcggca tggggttgtt tgcaacgccg ttcgtcgtgg cccaagcgca
     1021 caagatggtc ccgcccgaag acaacggcgg attcgccgcg cacaagctca tcgacgccgt
     1081 tgcggcttca ctcgaacttg atttcgcgca tgggctcgcg cgcgaagcgc gcctcttcga
     1141 agaactgatc cggtccgcgc cctcggcagc attgcagcat ttgttttttg ccgaacgcga
     1201 attgggcaag atcccgggcc ttgcgccaac cgagccgctc gatatcaaga ccgccggcgt
     1261 cattggcgcg ggtacgatgg gcacgggtat cgcgattacg tttgctagcg ccggtattcc
     1321 agtcatcgtg atcgagccgt cggacgaaca gatcgaaaaa tccaaaacga tggtcttcgg
     1381 catgttcgca caccaagtgc aacgcggccg gctgactcaa gaggaagcgt ggaagcgcgg
     1441 ccagtcgatt tcgtgggaat ccgattacaa cgaactcgcg accgtggacg tcgtcgtgga
     1501 agccgtcttt gagaacatgg atgtgaagaa gcaggtcttc accaagctcg atgcgatttg
     1561 caagcccgcg gcgattctcg catccaatac ctcgacgctt gatattgacg ccattgca
//
LOCUS       DATGBK010000478         1778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_144617, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000478 DATGBK010000000
VERSION     DATGBK010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144617"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /locus_tag="VKJ77_06880"
     CDS             complement(<1..764)
                     /locus_tag="VKJ77_06880"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013209703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HMC45031.1"
                     /translation="MPASVLVTRASFPDIVGSLREYFDVSDNADDTVWSQPELIGRLQ
                     GKSGAITHGSDRIDATLLDACPALRAVCNVGVGYNNVDVDACTRRGVLVTNTPGVLTA
                     TTADFGFALMMAAARRIAESEHFVRRGEWQKTGRYDMFVGSDIHHATLGILGMGRIGQ
                     AIAKRGAFGFDMRVIYHNRSPLSADIEAASRAQYADKETLLREADHLIVVVPYSSSSH
                     HTIGARELSQMKRTATLTNIARGGVVDDAALAAALR"
     gene            1084..1778
                     /locus_tag="VKJ77_06885"
                     /pseudo
     CDS             1084..1778
                     /locus_tag="VKJ77_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748748.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
BASE COUNT          316 a          515 c          578 g          369 t
ORIGIN      
        1 ttgcgcagtg ccgcggcgag tgctgcatcg tcgaccacac caccgcgcgc gatgttggtc
       61 agggtggcgg tgcgcttcat ttgcgacagc tcgcgtgcac cgatcgtgtg atgtgaactc
      121 gacgagtagg gtacgacgac aatcagatga tcggcttcgc gcaacagtgt ttccttgtcg
      181 gcatattgag cgcggctcgc ggcttcgatg tcggcggaaa gcggtgaccg gttgtgataa
      241 atcacgcgca tgtcgaaacc aaacgcgccg cgttttgcga tcgcctgtcc gatgcggccc
      301 atgccgagaa tgccgagcgt cgcgtggtgg atgtcagatc cgacgaacat atcgtagcgg
      361 cccgttttct gccactcgcc gcgccggacg aaatgctccg attcggcaat gcggcgggct
      421 gctgccatca tcaatgcgaa accaaagtcg gcggtggtag cggtaagcac gccgggcgta
      481 tttgtcacca gcacacctcg gcgggtacat gcgtctacgt cgacgttgtt gtacccgacc
      541 ccgacgttgc acaccgcacg caacgctggg caggcatcca gcaaggttgc gtcgatcctg
      601 tcactgccgt gagtaatcgc cccggatttg ccttgcaggc gcccaatcag ttctggctgg
      661 ctccagacgg tatcgtcggc gttgtcgctg acgtcgaagt actcgcgcag gctgccgacg
      721 atgtcgggaa aggacgcgcg cgtgacgagc acagaagcag gcatgttcaa gtctcttttg
      781 tggttgtcgg gctggctgac aaagcgtcgc ccacggtgat taaagtcctg ggccaagcct
      841 agcgggctcg ctgcttatct gccaagacgt tttgggtttg acgggataac aggtggttat
      901 ggcgccgggt cctataagcg atcgttatcc gactagacga aagtcatctt ggtgtgggct
      961 tcgggctggt ttaacgtagc tagcgccata ccggcaggac tcatctgccc agctcgccgt
     1021 tatgccacga cgccgcctgg tcgaggcatc gccctattcc agaacatcgc acaaggcttc
     1081 gctatgcatg cattggtgat ccacgcccct cacgacttgc gcgtcgaaga gactccgacg
     1141 cccgagatcg ggccgcaaca gttactggtc cgcatccgtt ccggtggtat ctgcggatcg
     1201 gacttgcatt acttcctgca tggcggtttc ggtaccgtcc gcattcgtga gccgatgatc
     1261 cttggccatg aggtatcggg cgtggtgcag gaagccgggt caggtgtcaa tgacatcctg
     1321 cccgggactc ggattgcgat cagcccgagc cgcccgtgcg gtttgtgcca atattgtcag
     1381 cagggcttgc agaatcattg tctcgacatg cgctactacg gcagtgcaat gcgcagtccc
     1441 catgtgcaag gcgcgttccg gcagcagatc gtgatcgacc gttcgcaggc gcatgaagtg
     1501 tcggcgtcgg tgagcgatgg cgaagcggca atggccgagc cattgtccgt ggggctgcac
     1561 gccgcgcgcc gtgcgggagc gttgctgggc cggcgcgtgc tggtgaccgg ctgcgggcct
     1621 atcggtgcgt tgatcgtggg ccgcccggcg tgcgggagca gccaacattg tggtaacgga
     1681 cgtaggcgaa ctggcgctct ccagcgcgct gcaaatgggc gccgatgagg tcgtcaatgt
     1741 cgctgacaac ccggacggat tgtcccggtt cacggcga
//
LOCUS       DATGBK010000479         1699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_29317, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000479 DATGBK010000000
VERSION     DATGBK010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29317"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..647)
                     /gene="glpD"
                     /locus_tag="VKJ77_06890"
     CDS             complement(<1..647)
                     /gene="glpD"
                     /locus_tag="VKJ77_06890"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004368 - glycerol-3-phosphate
                     dehydrogenase (quinone) activity [Evidence IEA];
                     GO_process: GO:0006072 - glycerol-3-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HMC45032.1"
                     /translation="MQGNLYDVLVVGGGVNGTGIARDAAGRGLTVMLCEKDDLASHTS
                     SSSTKLIHGGLRYLEYGEYRLVRKALQEREVLLRAAPHIIWPLRFVMPHMPNLRPAWM
                     IRAGLFLYDHLARRELLPGSRGINMRRHAAGAPLIDSIKRGFVYSDGWVDDARLVALN
                     AVDAQEHGAVIKTRTRLVSARRGEGVWHATLADNHGATFEIRARSIANAAGPWVS"
     gene            903..1283
                     /locus_tag="VKJ77_06895"
     CDS             903..1283
                     /locus_tag="VKJ77_06895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45033.1"
                     /translation="MRKMLVAGALSALMLGGCLSAPDVAGSRGAPSLAALQSMCGGSA
                     VDYGTDAQGVYSAFLDAYVAQKRGKLPKEQFCAFQAGIAGQYAAFSASRTAASQSAWA
                     SFFADQRAQALSWRAAVDPTLRAG"
     gene            complement(1381..1578)
                     /locus_tag="VKJ77_06900"
     CDS             complement(1381..1578)
                     /locus_tag="VKJ77_06900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004189182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45034.1"
                     /translation="MLSPHEFATLLLLQDAPHQMDMVRDELDALLERQLVQLENLASG
                     RQLWSLTASGDSTIKAIKRYS"
BASE COUNT          329 a          484 c          551 g          335 t
ORIGIN      
        1 tcgctgaccc acggcccggc ggcgttcgca atggagcgcg cccgaatttc aaaggtcgcg
       61 ccgtggttgt cggcgagcgt ggcatgccaa acgccttcgc cgcgacgcgc actgaccagg
      121 cgcgtgcgcg tcttgatgac cgcgccgtgt tcctgcgcgt cgaccgcgtt gagcgcgacg
      181 agtcgcgcgt cgtccaccca gccgtcggaa taaacaaacc cgcgcttgat tgagtcgata
      241 agcggagcac cggcggcgtg ccggcgcatg ttgatacccc gggagccggg cagcaattcg
      301 cggcgcgcga ggtgatcgta gagaaacagg ccagcgcgga tcatccaggc ggggcgcagg
      361 ttgggcatgt gcggcatgac gaaacgcaac ggccatatga tgtgcggcgc cgcgcgcagc
      421 aacacctcac gctcctgaag cgccttgcgc acgagccggt attcaccgta ttcgagataa
      481 cggagcccgc cgtgaatgag cttcgtactc gacgacgacg tgtgcgaagc caggtcgtcc
      541 ttttcgcaca gcatgacggt gaggccacgg cccgccgcgt cccgcgctat acccgtgccg
      601 ttgaccccgc cgcccaccac gagcacatca taaagattgc cttgcatcgc ttatccgccc
      661 catggccccc aacggaaaac tccgtcggaa cataataatg ttcgaattcg aaatttaacg
      721 aacaaaaacg aaaatgtaaa gtcgtctgaa cggctaacgc tctgctatta cggcgttttg
      781 ccggaaaagt gcaggtcgtg gtcgtatttc ggctcatttg ggctcatagg ccgtccggct
      841 gagtggcgcg acgttggcca cggaccgata ctgtagctac tgaagatgaa ggagagaatg
      901 caatgcgaaa gatgctggtg gccggtgcgc tgagcgcgct gatgctgggc ggatgtttat
      961 ccgcacctga tgtggcgggg tcccgtggag cgccatccct ggccgcgctt cagtccatgt
     1021 gcggtgggag cgctgtcgat tacggcacag acgcgcaggg cgtgtattcg gcgtttctag
     1081 atgcttacgt ggcgcaaaag cgcggcaagt tgccaaagga gcagttttgc gcgttccagg
     1141 cgggaattgc gggtcaatat gcggcgttta gtgctagccg tacggcggcg tcgcaaagcg
     1201 cgtgggcttc gttcttcgcg gatcagcggg cgcaagcgct tagctggcgc gcagccgtcg
     1261 acccgacgtt gcgcgctggc taattagttc gccaagtggt tcgctaatcg gttcgctcac
     1321 gcagcctgat tcactcgcgg gcgagtgtgg gctgaccgaa aagcagcggg ttgccgaaaa
     1381 ttacgaatat cgtttgattg ctttgatcgt ggagtcgccg gaagccgtca ggctccacaa
     1441 ctggcgtcca gacgcgaggt tttccaactg gacaagctgg cgttcgagca gggcgtcgag
     1501 ttcgtcgcgc accatgtcca tctgatgggg ggcgtcttgc aacaggagca gtgtggcgaa
     1561 ttcatgcgga ctgagcatcg tgttctccat gacgatctaa cggcactttg tccggtcggc
     1621 gaccggcaat cgtgctttgg aacgtttgcg cgaggcagga acttcgatcg gcagacgcat
     1681 gatgcatagc gtggttcgc
//
LOCUS       DATGBK010000480         3413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_260670, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000480 DATGBK010000000
VERSION     DATGBK010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260670"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..850)
                     /locus_tag="VKJ77_06905"
     CDS             complement(29..850)
                     /locus_tag="VKJ77_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013519874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HMC45035.1"
                     /translation="MKATVLIAEDEALLAADLQAQLTRLWPDLHCVASVADGKTAVEQ
                     ALALQPDVLFLDIRMPGMTGLEVAQALAEDWPDLAKPFPLLVFVTAYDQYALHAFEHA
                     AVDYVLKPVQPVRLEKTCARLQAALQQRAQSQAPGPSLDAAVHTLRELLHVDAARPQG
                     KPPAASPLRIIQASVGNTITMVPIADVLYFEAADKYVRLVTAKHEHLIRMSLRELQLQ
                     IDPECFWQVHRSTLVRCDAIASALRDDTGKLTLTLRDHPDKLSVSRLYADRFKGL"
     gene            complement(901..1983)
                     /locus_tag="VKJ77_06910"
     CDS             complement(901..1983)
                     /locus_tag="VKJ77_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020206358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HMC45036.1"
                     /translation="MRHAQPILNQLWRELRIFIPVSAASAVFFYVMYRDSFVSNLIYS
                     LCSALFIQGLIEVGRYGLAYRIRKRSPDNFDAQRDWPGWGLMIPWIVVSGIVGYFAGH
                     MLGDLLTGVQHAPSTRIDNPRPMLLSMTGVLVFSLGITYFFYARSRMAAMQTRTEAAL
                     RSAAESQLKLLESQLEPHMLFNTLANLRVLIAQDPPRAQAMLDRLIGFLRATLDASRS
                     GLGSHSLSEEFARIDDYLELMQTRMGNRLSRQLDLPDELGRLSMPPLLLQPLVENAIK
                     HGLEPTVAGGWIRVSAQREGSTLVLSVRDTGAGIGGLPSGGSRFGIQQVRERLAALYG
                     KTASLELVAASDDEGGTLAIVRLLVS"
     gene            complement(2012..2920)
                     /locus_tag="VKJ77_06915"
     CDS             complement(2012..2920)
                     /locus_tag="VKJ77_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HMC45037.1"
                     /translation="MTSLDKFMLFIAPPAVVAFALIEAVVLSRRQRYDWKAFGVSMAD
                     MIARIAIGIGLPLSIATPFIQLAYHYRLMTLQPSGWIALLVLFVGQEFCYYWYHRAAH
                     EIRWFWANHAVHHSPNELNLSAAFRIGVFGKLTGTMLFFVPMVWLGFGPGIVYAVLSL
                     NLLYQFWLHATWIPRLGWLEGILNTPSSHRVHHASNIEYLDANYGGVLIIFDRLFGTY
                     VKERDDLPCRYGLVHPITSYNPLRVESAQWVDLLRDLAGARSVSAILGYLFKPPGWAP
                     HGEGATTAELRARMRAAGQSGSSSHA"
     gene            complement(2973..>3413)
                     /locus_tag="VKJ77_06920"
     CDS             complement(2973..>3413)
                     /locus_tag="VKJ77_06920"
                     /inference="COORDINATES: protein motif:HMM:NF042671.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6622 family protein"
                     /protein_id="HMC45038.1"
                     /translation="TRPQQRTLRAATALPIAMAALSFYGVVSVFAAQSFALVAWAAAM
                     LAAFMICRAAGIGGKVRWLAAEQRLLVPGSWVPLVLFLGLFIIKFGANVMLAMHPDLG
                     IDKLFAVSVSFAYGAFSGIFLARSLAMWRVARQDEPSSMAIERL"
BASE COUNT          751 a         1039 c         1040 g          583 t
ORIGIN      
        1 gcagccacgc ccgctcggct acgctcagct aaagaccttt gaacctgtca gcgtaaaggc
       61 ggctcacgct cagcttgtcc gggtggtcgc gcagcgtcag cgtgagtttc ccggtgtcat
      121 cgcgtaacgc actggcgatg gcatcgcacc gtacaagcgt gctgcgatga acctgccaga
      181 agcactccgg atcgatttgc aattgcagtt cacgcagcga catcctgatc aggtgttcgt
      241 gtttggcggt gaccagccgt acgtatttat cggcggcctc gaagtacagc acgtccgcga
      301 tgggcaccat cgtgatggta ttgccgacgc tcgcctggat tattcgaagc gggcttgcgg
      361 ccggcggttt accctgcggc cttgcggcat cgacatgcaa aagctcgcgc aatgtatgaa
      421 cggcagcgtc caacgacggc cccggtgcct gcgattgcgc cctctgctgc aacgcggctt
      481 gcaaacgcgc acaggttttt tccaggcgaa caggctgcac aggcttcagc acataatcga
      541 ccgccgcgtg ctcgaacgca tgcaatgcgt attgatcgta ggcagtcacg aacaccagca
      601 acggaaacgg tttggcgagg tccggccagt cctctgcaag cgcttgcgcg acctcgagac
      661 ccgtcatgcc gggcatgcga atgtcgagga acagcacgtc gggttgtagc gccagcgcct
      721 gttcgactgc ggtcttcccg tcagccacac tcgcgacgca atgcaggtct ggccataacc
      781 gcgtcaactg ggcctgcagg tctgcggcca gcaaagcttc gtcttcggca atcaatacgg
      841 tggctttcat gatcggcaca gaatggtcgt tggcggtcga aatcaactca gcggacaaaa
      901 tcaagataca agaaggcgca cgatagcgag agtaccgccc tcgtcatcgc ttgcggcaac
      961 gagttcaagc gacgcggtct taccgtacaa cgcggcgagc cgttcacgaa cctgctggat
     1021 gccaaagcgg ctgccaccgg acggcaaacc gccaatcccc gcccctgtat cgcgaacgct
     1081 gagcacgagc gtgctgcctt cacgctgcgc gctcacccga atccagccgc ctgcaaccgt
     1141 cggttcaagt ccatgcttga tggcattctc gaccagaggt tgcagcagca gtggcggcat
     1201 cgacagccgc ccaagctcgt ccggcaaatc gagctgcctg ctcaagcgat ttcccatgcg
     1261 ggtctgcatc aactcgagat aatcgtcaat gcgcgcaaac tcctcagaca acgaatgtga
     1321 tcccaatccc gaacgcgagg cgtccagcgt cgcgcgcaaa aatccaatca gccggtcgag
     1381 catggcttgg gcacgcggcg gatcttgcgc gatcagcacc cgcagattgg cgagcgtgtt
     1441 gaacagcatg tgcggttcga gctgcgactc cagcagcttg agctgactct ccgcggcact
     1501 tcgcaacgcg gcttcggtgc gcgtttgcat cgcggccata cggcttcggg cataaaagaa
     1561 atacgtgatg cccagcgaaa acactaacac accggtcatg ctcagcaaca tcggccgcgg
     1621 gttgtcaata cgcgtggacg gtgcgtgctg cacgccggtc agcagatcgc cgagcatgtg
     1681 cccggcgaag taacccacta tgcccgacac cacaatccag ggaatcatca agccccagcc
     1741 gggccagtcg cgctgcgcgt cgaagttatc gggggaacgc ttgcgaatgc ggtaggcgag
     1801 gccatagcgg cccacctcga tcaatccctg gatgaagagc gcgctgcaca gcgagtagat
     1861 caggttgctc acgaacgaat cgcgatacat cacgtaaaag aacacggcgc tcgccgcgga
     1921 caccgggata aagatccgca gttcgcgcca tagctggttc aggatgggtt gagcgtggcg
     1981 catgcagtgg gcagtggtgg tatggggtgc ttcaggcgtg gcttgaactg ccgctttgtc
     2041 cggctgcccg catccgcgcg cgcagctcgg cggtcgtagc gccttcgccg tgtggcgccc
     2101 agccgggagg cttgaacaag tatccgagga tcgcggacac actgcgcgcg ccggccaggt
     2161 cacgcagcag atcgacccat tgcgcggatt ctacgcgtag cgggttgtag ctggtgatcg
     2221 gatgcacgag accatagcgg caaggcagat cgtcgcgctc tttgacatag gtgccaaaga
     2281 gccggtcgaa gatgatcagc acaccgccgt aattcgcatc cagatactca atgttcgaag
     2341 catgatgcac gcggtgcgac gacggcgtgt tgagaatccc ttcgagccag ccaagccggg
     2401 gaatccaggt cgcatgaagc cagaactgat acaggagatt cagcgacagg acggcgtaca
     2461 caatacccgg gccgaagccg agccagacca tgggcacgaa gaacagcatt gtgccggtga
     2521 gcttgccgaa cacgccaatg cgaaacgcgg ccgagagatt cagctcgttc ggcgagtgat
     2581 gcaccgcgtg attggcccag aaccaacgga tctcgtgcgc tgcccggtga taccagtagt
     2641 agcagaactc ttgccccacg aataacacga gcaatgcgat ccagccggaa ggctgaaggg
     2701 tcatcaggcg atagtgatat gcaagctgga tgaacggcgt ggcgatggag agcggcaatc
     2761 caatgccgat cgcgatacgc gcaatcatgt cggccatcga gacgccaaag gccttccagt
     2821 cgtagcgctg gcgacgcgac agaactactg cctcgatcag cgcaaacgcc accaccgcgg
     2881 gcggcgcaat gaacagcatg aatttgtcga gcgaagtcat ggttgcgggt tcttgggttg
     2941 tgcgacgaaa ctggtttgcg gcatacggcg ggtcaaagcc gctcaatagc catgctggac
     3001 ggctcgtcct gccgggcgac gcgccacatc gcgaggctcc gtgcgaggaa gatgccgctg
     3061 aaggcgccgt acgcaaaact caccgatacc gcgaacagct tgtcgatgcc cagatcggga
     3121 tgcatcgcca gcatgacgtt cgcgccgaat ttgataatga acagaccgag gaacaacacg
     3181 agcgggaccc agcttccggg cacgagcaga cgctgctcgg cagcaagcca gcggaccttg
     3241 ccgcctatgc cggcagcgcg gcatatcatg aaagccgcga gcattgccgc tgcccacgcg
     3301 accagcgcga aggactgcgc cgcgaagact gacacaacac cataaaagga gagcgcggcc
     3361 atcgcgatgg gaagcgccgt cgcggcgcgc agcgtccttt gctgaggcct cgt
//
LOCUS       DATGBK010000481         2525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_167951, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000481 DATGBK010000000
VERSION     DATGBK010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167951"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..91
                     /locus_tag="VKJ77_06925"
     CDS             <1..91
                     /locus_tag="VKJ77_06925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012356851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HMC45039.1"
                     /translation="QIVEADPSKPRFVKTVWGVGYMLIAEVEP"
     gene            136..1500
                     /locus_tag="VKJ77_06930"
     CDS             136..1500
                     /locus_tag="VKJ77_06930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC45040.1"
                     /translation="MTPIMLPRSLFARNIALLVVLVIVSQISSLSVLMYFVQRPRIER
                     AAETFAIYVQTLDDLLKTAAPDAQSGLAIRFKASRQFPAGAASEPSVTWRNFYRTYQR
                     EIFIDALRQNLPADMEVQWQTQGEQRLWIRAHLGQEPYWIALPVPEAAHNDGMLSAIA
                     LSLALGGLAIVTAYLIQRHISRPLRDLADAAHRLSSGEAPQALRIDGPTEIAQVSVAF
                     NQMVHALQEADATRSLMLAGISHDIRTPLTKLRLAVAMTTPSEEHDELAVSTDHYLDQ
                     IDAILQQFMDYAGSGTREAAEFGDLNALVNSLAADFAGLGHVFELTLGDLQPFPFRPI
                     SVMRVLMNLMQNAVLYGRVELSARTWTDHVTHTAYVEIADRGKGVNAGDLDALKAPFK
                     RGRSTGAHPGGTGLGLAIVEKIAKLHGGELQLVQREGGGFSAIVSLSTSPENQRSQEE
                     RGTA"
     gene            1653..2384
                     /locus_tag="VKJ77_06935"
     CDS             1653..2384
                     /locus_tag="VKJ77_06935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019938050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC45041.1"
                     /translation="MIDTTTARGATTYVLVHGAWHGGWCWETVAQILRTRGHQVFTPT
                     LSGLGERAHLLSKAIDLSVFIQDVVNVLEYEDLTDVVLVGHSFGGLPITGAADRVPQR
                     IRQLVFLDAVVLEHGQTAFSRLAPEIVAQRIALSNKSSGGLSIPVPPASAFGVFEPAQ
                     VALLERNCTPHPLKTFDDPITLNEPVGGTIPKVYIQCVDPVYEPLQSSRDFVRAQEHW
                     TWDEIATGHDAMISAPEALAAKLLR"
     gene            complement(2393..>2525)
                     /locus_tag="VKJ77_06940"
     CDS             complement(2393..>2525)
                     /locus_tag="VKJ77_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020204447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HMC45042.1"
                     /translation="AVYGFVANIFFYDIDTPLKQFVLTRPDLVRHCLAVRAVIDKPA"
BASE COUNT          514 a          759 c          748 g          504 t
ORIGIN      
        1 gcagatcgtg gaagccgatc cgtcgaaacc gcgcttcgtc aagacggtat ggggcgtggg
       61 ctacatgctg atcgcggaag tcgaaccatg agccggcgca tgagccctcg catgggccct
      121 cgcatgggcc ctcgcatgac accaatcatg ctgccgcgct cgttgttcgc gcgcaatatc
      181 gctctgctcg tggtgctggt tattgtgagc cagattagtt cgttaagcgt actaatgtac
      241 ttcgtccaga gaccgcggat cgaacgtgcc gccgagactt tcgcgatcta cgtgcaaacg
      301 ctggatgacc tgttgaagac cgccgcgcct gacgcacaga gcggactcgc gattcgcttc
      361 aaggctagcc ggcaattccc cgccggggcc gcctccgaac cttcggtgac atggcgcaat
      421 ttttatcgga cttatcagcg cgagatcttt atcgatgcct tgcgccaaaa tctgcccgcg
      481 gacatggagg ttcaatggca gacccaaggc gaacaacggc tttggattcg cgcgcatctt
      541 ggtcaagagc cttactggat cgccctgccc gttcccgaag cggcgcataa cgacggcatg
      601 ctctccgcta tcgcgctgtc gcttgcgctt ggtgggcttg ccatcgtcac cgcttacctg
      661 atccagcggc acatcagccg gccgttacgc gatcttgccg acgcagcgca ccgcttgagc
      721 tcgggagagg cgccacaagc gctgcgtatc gatggaccga ccgagatcgc gcaagtcagc
      781 gttgcattca accagatggt ccacgctttg caggaagccg atgcaacccg ttcgctgatg
      841 ctcgccggta tctcccacga tatccgcacg ccattgacca agctgcgtct ggctgtggcc
      901 atgacaacac catcggagga acatgatgaa ctcgcggtat cgacggatca ttatctcgat
      961 cagatcgacg ccattctcca gcagttcatg gactatgccg gtagcggcac gcgtgaagcg
     1021 gctgagttcg gcgacctgaa tgcattggtg aatagtcttg ccgccgactt cgcgggcctt
     1081 ggtcacgtgt tcgaactcac tctcggcgac ttgcaaccgt tcccgttccg tccgatcagt
     1141 gtcatgcgcg tgctgatgaa cctgatgcag aacgcggtgc tgtacggccg cgtggagttg
     1201 tcggcgcgga catggaccga ccatgtcact cacaccgcgt acgtggagat cgccgatcgt
     1261 ggcaaaggcg tgaatgccgg cgatctcgat gcgttgaaag cgccgttcaa acgagggcgt
     1321 tcgacgggtg cgcatccggg agggacgggc ttgggtctgg ctatcgtcga aaagatcgcg
     1381 aagctgcatg gcggtgaact tcagttggtg cagcgtgaag gcggcggatt ttcggctatc
     1441 gtctcgttgt caacgagccc agagaatcag cgctcgcaag aggaacgtgg tacggcttag
     1501 aatccctcgc aagtgaaacg gcggcagcac atcgagcacg agattgcgcg taccatttcc
     1561 gtccgaacgc gaccgaaacc atcgggttgc gcaacgcttt accggcagag acgaagacaa
     1621 agacggagac ggacttggcc accccagaca atatgatcga tacaaccact gcccgcgggg
     1681 ccacaaccta cgtactggtt catggcgcgt ggcacggcgg atggtgctgg gaaaccgttg
     1741 cccaaatctt gcgcactcgt ggacatcagg tatttacccc tacgctcagc ggccttggcg
     1801 aacgtgcgca tctgctttcg aaggctattg atctcagcgt gtttatccag gacgtcgtca
     1861 atgtcctcga gtacgaagac ctgaccgacg tcgttctggt cggccacagt ttcggcggac
     1921 tgccgatcac cggtgcagcg gatcgcgtgc ctcagcgcat ccggcaactt gtctttctcg
     1981 atgccgtcgt gctcgagcac ggacagacgg cgttctcccg actcgcgccc gagatcgtgg
     2041 cgcaacgcat cgcgctatcg aacaaaagca gcggcggcct ctccataccg gtgccgcccg
     2101 cgagtgcatt cggtgtgttc gaacccgccc aagtggcgct gctggaacgt aattgcacgc
     2161 cgcatccgct gaagaccttc gatgacccca tcacgctcaa cgagcccgtg ggcggcacga
     2221 tcccgaaggt gtacatccag tgtgtcgatc cggtgtacga gccgctgcaa tccagccgcg
     2281 atttcgtccg tgctcaagag cattggacat gggacgagat agcaaccgga cacgacgcga
     2341 tgatcagcgc gcccgaagcg cttgcggcca aattgcttcg gtagcgtcgt agtcaggccg
     2401 gcttgtctat caccgcacga accgcaaggc agtgccgcac aagatccggt cgtgtcaaaa
     2461 caaactgctt gagcggcgtg tctatgtcgt agaaaaagat gtttgccacg aagccataga
     2521 ctgcg
//
LOCUS       DATGBK010000482         1742 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_121617, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000482 DATGBK010000000
VERSION     DATGBK010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121617"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            436..>1742
                     /locus_tag="VKJ77_06945"
     CDS             436..>1742
                     /locus_tag="VKJ77_06945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011353183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HMC45043.1"
                     /translation="MLARGLAFAATALTALALAACATRAPATAFDRPATHALSATADT
                     PLRTALLPKEAAHPGESGVRLLPTGTEALQARIALARAATKTLDMQYYIANEDNTGKL
                     LLGAALYAADRGVKVRMLVDDLNFKDIDQIMAALNSHDNIDIRVFNPYGSATRSFGER
                     TRNLFTKVDHFTRRMHNKAMIADNQIAIVGGRNLGDEYFSASATLQFRDLDVFAAGPV
                     TQEISASFDDYWNSSIAYPLRALNKQKFDPADLDKTREDLRQHWKEQADPLNAKPLNA
                     TPIAQQIAQDGLGLTWTRTEFEADSPVKIEHPDKDYKSPPMQRLVELANQASSEVLII
                     SPYFVPHDEGVKSLAAITARGVKVKVLTNSLAATDAVAVQAGYAPYRVPMLKAGVELY
                     EFKPVQAEGEGRPRAGLFGSQSRASLHAKAYMLDRSILVIGSM"
BASE COUNT          368 a          575 c          519 g          280 t
ORIGIN      
        1 tggctaataa cgcggttcct cgcgacggca aatccagcgt tcaatgattc gatgccggcc
       61 gccaaacaag atgcgagcaa ccgtcgcaga cctctcccgt tcccgtctcg ccgcccctgc
      121 gctatttcgc aaatcgaccc atccgccgtg tccgtagccg atttcccata aaataaccgc
      181 gcatgatcct tgggcagact cgcgcgagat ccggcgctgc acgccaccgc tgcgtgcgca
      241 acaacggcaa gcagttcaga aaaatcgctc gggcaaacaa gaggaatgga cgtgtcggaa
      301 agcagcaggc agttatctcg gtcatgtata tcccaagccg cacaaggtca gcaccccggc
      361 gggcacacag agcgcacgcg agcaggacag gtttcatccc agccggcggt ctcagcgaag
      421 gcccggtgcg cccaactgct ggcgcgcggg ctcgcgttcg cggccacagc gctcacggcg
      481 ctggcgctcg ccgcctgcgc cacgcgtgcg cccgcaaccg cgttcgaccg ccccgccacc
      541 cacgcacttt ccgctaccgc cgacaccccc ttgcgaaccg cgctcctgcc gaaggaggct
      601 gcgcatccgg gcgagtccgg cgtgcgtctg cttcccaccg gcaccgaggc gctgcaggcc
      661 cgcatcgccc tcgcccgcgc ggcgaccaag acgctcgaca tgcagtacta catcgcgaac
      721 gaggacaaca cgggcaagct gctgctcggc gcggcgcttt acgcggcgga tcgcggagtc
      781 aaagtgcgca tgctcgtcga tgacctgaat ttcaaggaca tcgaccagat catggccgcg
      841 ctgaattcgc atgacaacat cgatatccgc gtgttcaatc catacggcag cgcgacccga
      901 agtttcggcg aacgcacacg caacctgttc acgaaggtcg atcatttcac gcgtcggatg
      961 cacaacaagg cgatgatcgc ggacaaccag atcgcgatcg tgggcggccg taatctcggc
     1021 gatgaatact tcagcgcgag cgcgaccctg cagtttcgcg atctcgatgt gttcgcagcc
     1081 ggcccggtga cgcaagagat atcggcgagc ttcgacgact actggaacag ctcgattgcg
     1141 tatccgctgc gcgcgctgaa caagcaaaaa ttcgatcccg ccgatctcga caaaacccgc
     1201 gaagaccttc gccagcactg gaaagaacag gccgatccgc tcaacgccaa gccgctcaac
     1261 gccacgccga ttgcccagca gatagcacag gacgggctgg gcctgacctg gacgcgcacg
     1321 gagttcgaag ctgattcacc ggtgaagatc gagcatcccg acaaagacta caaaagcccg
     1381 cccatgcagc gcctggtcga gctggcaaat caggcgagta gcgaggtgct gatcatctcg
     1441 ccgtatttcg tgccgcacga cgagggcgtg aaatcgcttg ccgcgatcac ggcgcgcggc
     1501 gtgaaggtga aagtgctgac caattcgctg gcggccaccg acgccgttgc ggtacaggcg
     1561 ggttacgcgc cgtatcgcgt accgatgctc aaggcaggcg tagagttata cgagttcaag
     1621 ccggtgcagg cggagggtga gggccggccg cgcgcggggc tgttcggctc gcaatcgcgc
     1681 gcgagcctgc atgccaaggc ttatatgctc gatcgcagta tccttgtgat tggatcgatg
     1741 aa
//
LOCUS       DATGBK010000483         1528 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_52326, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000483 DATGBK010000000
VERSION     DATGBK010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52326"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..1184
                     /locus_tag="VKJ77_06950"
     CDS             87..1184
                     /locus_tag="VKJ77_06950"
                     /inference="COORDINATES: protein motif:HMM:NF014653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HMC45044.1"
                     /translation="MPETYYIIPKDKHDSLVTQAYRKRGYDAAEAAAGARFCASAAYY
                     GIRTHNAIKALHLDELFGSKVGRWTPGAKIEKLPSRFAAAEIWNGHNKLGQAVAYEAM
                     DTCMKLADKFGVGMVSVDNATHYLWGGGYVMDAALKGYLAYTNCTSATSEVVPFGGKT
                     PTMGTNPHSWAFPTQDAIGFPIVIDWATSTIAMGRVQVMKREGKQLPPGAAVDAEGNP
                     TTDPNKAVALLPFGAHKGYGLGLIDELYAGYIGGSLPEIRGTSRGGDGEKRGSTFYFQ
                     VIHPDAMKGNDYVKGRSQIQNVKAIIEDVLGHGNEKCMLPGQPEARWGELSKKNGGLL
                     FTKAEIEELNHLAHEVGEAVWNLSEFKSVQV"
     gene            1253..>1528
                     /locus_tag="VKJ77_06955"
     CDS             1253..>1528
                     /locus_tag="VKJ77_06955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015603937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene/phytoene synthase family protein"
                     /protein_id="HMC45045.1"
                     /translation="MSDPSEPELLTGLLKDVSRSFYLTLRVLPKAIRPQIGLAYLLAR
                     TTDTIADTEIVPSAQRLDALQKLRERILGQSSAPLNFGELARRQGSSA"
BASE COUNT          333 a          468 c          454 g          273 t
ORIGIN      
        1 ctttggagaa aatacgatga ctggaattat ttcgccaatt accaattcga tttttgaagt
       61 ttattgacga cgacaattaa atttttatgc ccgaaaccta ctacatcatt cccaaagaca
      121 aacacgattc actcgtcacg caggcgtatc gcaagcgcgg ttacgatgcc gccgaggccg
      181 ccgccggcgc gcggttctgc gccagcgccg cgtattacgg catccgcacg cacaacgcca
      241 tcaaggcgct gcacctcgac gaattgttcg gcagcaaggt cggccgctgg acgcccggcg
      301 cgaagatcga gaagctgccg tcgcgcttcg ccgccgccga aatctggaac ggccacaaca
      361 agctcggcca ggccgtcgcc tacgaggcga tggacacctg catgaagctc gccgacaaat
      421 tcggcgtggg catggtgagc gtggacaacg ccacgcatta tctctggggc ggcggctacg
      481 tcatggacgc cgcgctcaag ggctacctcg cctacacgaa ctgcacgtcg gccacgtccg
      541 aagtcgtgcc gttcggcggc aagacgccga cgatgggcac gaacccgcat tcgtgggcgt
      601 tcccgacgca ggacgcgatc ggttttccca tcgtgattga ctgggcgacc tcgaccatcg
      661 cgatgggccg cgtgcaagtg atgaaacgcg aaggcaaaca gcttccgccc ggcgccgccg
      721 tggatgccga gggcaatccg acgaccgatc cgaacaaagc cgtcgcgttg ctgccattcg
      781 gcgcgcacaa gggctacggc ctcggtttga ttgacgaact ttacgcgggt tacatcggcg
      841 gttcgctgcc ggaaatccgc ggcacgtcgc gcggcggcga cggcgagaag cgcggctcga
      901 cgttttattt tcaagtcatc catcccgacg cgatgaaagg caacgactac gtcaaaggcc
      961 gttcgcaaat ccagaacgtg aaggcgatca tcgaggacgt gctcggtcac ggcaacgaga
     1021 agtgcatgtt gcccggccag ccggaagcgc gctggggcga actgtcgaag aaaaacggcg
     1081 gcctgctgtt cactaaggcg gagatcgagg aactgaacca tctcgcgcac gaggttgggg
     1141 aggcggtatg gaatttgagt gaattcaaat ccgtgcaggt ataatcgttt gcgcgggcgg
     1201 tcacgcgaca cgaaagctgg atttctccac cggctttcgc aatagtgcaa gcgtgtccga
     1261 cccaagcgaa ccagaattat tgaccggcct gttgaaagac gtgtcgcgct cgttctacct
     1321 gacgctgcgc gttctgccaa aggcaatccg cccgcaaatc ggcctggcgt atctgctcgc
     1381 gcgcacgacc gacaccatag ccgacacgga aatcgtcccg tccgcgcaac ggctcgacgc
     1441 gttgcaaaaa ctccgtgaac ggattctcgg ccaatcttca gcgccgctga atttcggcga
     1501 actcgcccgg cggcaaggtt cgtccgcc
//
LOCUS       DATGBK010000484         2071 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_144677, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000484 DATGBK010000000
VERSION     DATGBK010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2071
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144677"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..631)
                     /locus_tag="VKJ77_06960"
     CDS             complement(143..631)
                     /locus_tag="VKJ77_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HMC45046.1"
                     /translation="MSDEHQHEHTDWRENGVKVIKGDHLDTNTPQTPGMNRAAAINAA
                     RVGAQKIWAGTVTIHPNAKTGAHHHGALESVIYVVRGQARMKWGNQLEFTAEAGPGDF
                     IFVPPYVPHQEINALTDEPLECVLVRSDNEAVVVNLNIDAVEAPEEVFWVDPIHKHPH
                     QH"
     gene            complement(778..>2071)
                     /gene="fusA"
                     /locus_tag="VKJ77_06965"
     CDS             complement(778..>2071)
                     /gene="fusA"
                     /locus_tag="VKJ77_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HMC45047.1"
                     /translation="NKGVQAMLDAVIDYLPSPADVPAIMGVDEYDKHAERHPTDEDPF
                     SALAFKIMTDPFVGQLIFFRVYSGVVNSGDTVYNAIKEKKERLGRILQMHANERQEIK
                     EVRAGDIAAAVGLKEATTGDTLCDPAHPIILERMIFPEPVISQAVEPKTKPDQEKMGI
                     ALNRLAQEDPSFRVQTDEESGQTIISGMGELHLEILVDRMRREFGVEATVGKPQVAYR
                     ETIRIPVDDIEGKFVKQSGGRGQYGHVVLKLEPQKPGTGYEFVDAIKGGVVPREYIPA
                     VDKGIQETLKAGVLAGYPVVDVKVTLTFGSYHDVDSNENAFRMAGSMAFKDGMRKAKP
                     VLLEPMMAVEVETPEDFMGNVMGDLSSRRGIVQGMEDIAGGGGKIVRAEVPLAEMFGY
                     STTLRSLTQGRATYTMEFKHYAETPNNVAEAIVNSKGK"
BASE COUNT          380 a          665 c          568 g          458 t
ORIGIN      
        1 cgacacgcgt ttcacgtgcc aattaattgc gcatgccgta ggacagacgc gacgttgcgg
       61 aaaagcttgc tgaaaacgtg cggatcaagc gtcaacaggg cggtaggaaa ttccgcacat
      121 ttgtgtgctc aacccgtcgc gttcaatgct gatggggatg tttatggatc ggatcgaccc
      181 aaaacacttc ctcgggcgct tccaccgcat cgatgttcag attcaccacc accgcctcgt
      241 tgtcgctgcg cacgagtacg cattccagcg gttcgtcggt gagcgcattg atctcctgat
      301 gcggcacgta cggcggcacg aagatgaaat cacccggccc ggcttcagcg gtaaattcca
      361 gttgattgcc ccacttcatg cgcgcctgtc cgcgcacgac atagatcacg ctttcaagcg
      421 cgccgtgatg atgcgcaccg gttttcgcat tcggatggat cgtgaccgtg ccggcccaga
      481 ttttctgggc gcctacgcga gcagcgttga ttgcggccgc ccgattcatt ccgggcgtct
      541 gtggggtatt cgtatcgagg tgatcgccct tgatcacctt gacgccgttc tcgcgccagt
      601 cggtgtgctc gtgctgatgt tcgtcgctca ttgtctttgt ctccgcctat cgatgggaaa
      661 gctgcggtca agctacgcca cagtcactcc ggcaaaaagc aaaaaagtcc gtcgccgccg
      721 ggaggcaaca acggacttgg ttcaatcgcc taactagatt ctcgagccag gcaacgtcta
      781 cttacccttc gaattcacga tggcttccgc gacgttgttt ggcgtctcgg catagtgctt
      841 gaactccatc gtgtacgtgg cgcggccctg ggtgagcgag cgcagcgtgg tcgagtagcc
      901 gaacatttca gccagcggca cctcggcgcg cacgatcttg ccgccgccgc ccgcgatgtc
      961 ttccatgccc tgcacgatcc cgcggcgtga cgacaaatcg cccatcacgt tgcccatgaa
     1021 atcctcaggc gtttccactt ccacggccat catcggttcg agcagcaccg gcttggcttt
     1081 cctcatgccg tccttgaacg ccatcgatcc agccatgcgg aacgcgtttt cgttcgagtc
     1141 cacgtcgtgg tacgaaccga aggtcagcgt caccttcacg tccaccaccg gataccccgc
     1201 cagcacgccg gctttcagtg tttcctgaat acccttgtcg accgccggaa tgtattcgcg
     1261 cggcacgaca ccgcccttga tggcatcgac gaattcgtaa cccgtgcccg gcttttgtgg
     1321 ttccagcttc agcaccacgt gaccatattg accgcgtccg ccggactgct tgacgaactt
     1381 gccttcaata tcatcgaccg gaatgcggat cgtctcgcga tacgcaacct gcggtttgcc
     1441 gaccgtcgct tcgacgccga actcacgccg catccggtcc accagaattt ccaggtgcag
     1501 ctcgcccatg cccgagatga tcgtctggcc ggattcctcg tcggtctgca cgcggaacga
     1561 tggatcttcc tgcgccagcc ggttcaacgc gatacccatc ttttcctggt cgggcttcgt
     1621 cttcggctcg acggcctggg agatcaccgg ttccgggaag atcatgcgtt cgagaatgat
     1681 cggatgagcc ggatcgcaca gcgtgtcgcc ggtcgtggct tccttcagcc ccacggccgc
     1741 ggcaatatcg ccggcgcgca cttccttgat ttcctgacgc tcgttcgcgt gcatctggag
     1801 aatccggccg agccgctcct tcttctcctt gatcgcgttg tagacggtat cgccggaatt
     1861 caccacgccc gaatacaccc ggaagaagat caactggccg acaaacgggt ccgtcatgat
     1921 cttgaaggcg agcgcggaga acggatcttc gtcggtcgga tgacgttccg catgtttgtc
     1981 gtactcgtcc acgcccatga tggcgggcac gtccgccggc gacggcaagt aatcgataac
     2041 cgcgtccagc atggcctgca cacccttgtt c
//
LOCUS       DATGBK010000485         3081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_168000, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000485 DATGBK010000000
VERSION     DATGBK010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3081
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168000"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..715)
                     /locus_tag="VKJ77_06970"
     CDS             complement(<1..715)
                     /locus_tag="VKJ77_06970"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HMC45048.1"
                     /translation="MSRQFALAALTAIELTPPELVSAAARNGYDAVGLRLNPFRAGEL
                     QHPMFNNSPMLRETEARLHDTGLGVLDIEVMRLSAGQDVQALLPVLETGHRLGAKYAL
                     TLIDIADLSLAAAKFAELCALAAPLGITCVLEFAVWLGVGSIQAAGAVIQQAQQVNGA
                     LLLDPFHLFRSGGQVADISAMNPHLIHYAQFCDASAIAPVTTAAISEEARFDRCLPGE
                     GGLPLQAFVGALPQGVPLSL"
     gene            complement(719..1777)
                     /gene="dmpG"
                     /locus_tag="VKJ77_06975"
     CDS             complement(719..1777)
                     /gene="dmpG"
                     /locus_tag="VKJ77_06975"
                     /EC_number="4.1.3.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011354793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008701 - 4-hydroxy-2-oxovalerate aldolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxovalerate aldolase"
                     /protein_id="HMC45049.1"
                     /translation="MTTKKLYISDVTLRDGSHAIRHQYSIANVRAIAQALDEAGVDSI
                     EVAHGDGIEGSSFNYGFGAHSDVEWIAAAAESVKTAKIATLLIPGIGTTHDLRNAFDA
                     GARIVRVATHCTEADVSRQHLEFARELGMDPVGFLMMSHMTTPQKLAEQAKLMESYGA
                     SCVYVVDSGGALGMNDVRDRFRAFKDALKAETETGMHAHHNLSLGVANSLVAIEEGCD
                     RVDASLAGMGAGAGNAPLEVFIAAAERQGWHHGCDLYKLMDAADDLVRPLQDRPVRVD
                     RETLALGYAGVYSSFLRHAEVAAKRYDLKTVDILVELGKRKMVGGQEDMIVDVALDLL
                     KRAAHEPSRYVPAMSEAG"
     gene            complement(1774..2745)
                     /locus_tag="VKJ77_06980"
     CDS             complement(1774..2745)
                     /locus_tag="VKJ77_06980"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008774 - acetaldehyde dehydrogenase
                     (acetylating) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetaldehyde dehydrogenase (acetylating)"
                     /protein_id="HMC45050.1"
                     /translation="MNKKVKVAIIGPGNIGTDLMIKVMRNSEHLEMGAMVGVDPASDG
                     LARAQRLGVATTAEGLDGLLKLDVFKDIDIVFDATSAGAHKRHNDVLQAHGVQVIDLT
                     PAAIGPYVIPAINLEAENAANMNMVTCGGQATIPIVAAVSRVAKVHYAEIVASISSKS
                     AGPGTRANIDEFTETTRSAIEKLGGATRGKAIIVLNPAEPPLIMRDTVFVLSDLADQA
                     ALLASIEAMVASVQAYVPGYRLKQEVQFDVIDPSKPLNVPGLGPMHGLKTSVFLEVEG
                     AAHYLPSYAGNLDIMTSAALACGDMMARRRMAAGVARGDRKNQETVQ"
     gene            complement(2793..>3081)
                     /locus_tag="VKJ77_06985"
     CDS             complement(2793..>3081)
                     /locus_tag="VKJ77_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020206164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HMC45051.1"
                     /translation="VIGPWCSPQIDFANLGLTLNIDGRVVQVGSTAALLGHPLRSLVA
                     AARLSALAGEPLQAGWIVMAGGATPAEWIKPGQYISVDMERLGSAGFHVKG"
BASE COUNT          559 a         1034 c          892 g          596 t
ORIGIN      
        1 caagactcag gggcacgccc tgcggcagag ctcccacaaa cgcctgcaac ggcaggccac
       61 cctcgccggg cagacaacga tcgaaacggg cttcttccga gattgccgcc gtcgtcacgg
      121 gtgcaatcgc cgaggcatcg cagaactgcg catagtgaat cagatgagga ttcatggcgc
      181 ttatgtcagc gacctgcccg ccactgcgaa acaggtggaa cgggtcgagc aacaacgcgc
      241 cgttgacctg ctgagcctgc tggatcaccg cgccggccgc ttgaatactg ccgacgccca
      301 gccacactgc gaactcgagc acgcaggtta ttccgagcgg cgcagccagc gcgcacagct
      361 cggcaaattt cgccgcggcg agcgacaggt ccgctatatc gatcagggtg agcgcgtact
      421 ttgctccaag gcggtgtcct gtttcaagca caggaagcag agcctgcacg tcctgcccgg
      481 ccgacagccg catgacttca atgtccagca ccccgaggcc ggtatcgtgc agccgagcct
      541 cggtttcgcg cagcatcggg ctattgttga acatgggatg ctgcaactcg cccgcgcgga
      601 agggattcaa cctcaggcct accgcgtcgt agccgttacg cgccgccgca ctgacgagct
      661 cgggcggcgt cagctcaatc gctgtcagcg cagcgagcgc gaattggcgt gacatggctt
      721 accccgcttc gctcatagcc ggcacataac gcgatggctc gtgtgccgcg cgcttgagca
      781 ggtccagtgc gacgtccacg atcatgtctt cctgtccgcc caccatcttc cgcttgccga
      841 gttcgacgag gatgtcgacc gtcttcaggt cgtaccgttt cgccgccact tcagcatgcc
      901 gcaggaagct cgaatacaca cccgcgtaac ccagcgcaag cgtctcccgg tccacccgca
      961 cgggccggtc ctggagcgga cgaacgaggt cgtcggcggc atccatcagc ttgtacaggt
     1021 cgcagccgtg gtgccagccc tgccgctccg ccgccgcgat aaacacctcg agcggtgcgt
     1081 tacccgcacc ggcgcccatg cccgcgaggc tggcatcgac acgatcgcag ccctcttcta
     1141 tcgccaccag cgagttggcg acgcccaagc tcaggttgtg atgcgcgtgc atgccggttt
     1201 ccgtctcggc cttaagcgcg tccttgaatg cgcggaaacg gtctcgtacg tcgttcatgc
     1261 ccaacgcccc accggagtcc accacatata cgcaggacgc gccgtagctc tccatcagct
     1321 tcgcttgctc agcgagtttt tgcggcgtcg tcatgtggct catcatcagg aagccgaccg
     1381 ggtccatccc cagctcgcga gcgaattcca gatgctgccg cgacacgtcc gcctcggtgc
     1441 aatgcgtcgc cacccggacg atgcgtgcgc cggcatcgaa tgcattccgc aggtcatgcg
     1501 tggtgccaat accgggaatc agcagcgtcg cgatcttcgc tgtcttcacg ctttcagcgg
     1561 cagcggctat ccattccacg tcgctatgcg cgccgaagcc gtagttgaaa ctcgatcctt
     1621 cgataccatc gccatgtgcc acttcgatgc tgtcgacgcc cgcttcatct agcgcctgcg
     1681 caatcgccct gacgttcgcg atgctgtatt gatgacgaat ggcgtgactg ccgtcgcgca
     1741 gcgtgacgtc ggagatatag agttttttcg tcgtcattgc acagtttcct gatttttccg
     1801 atcgccacgg gccacgcccg ctgccatgcg gcgacgtgcc atcatgtcgc cgcaagcgag
     1861 tgccgcggaa gtcatgatgt cgagattgcc cgcgtacgac ggcaagtagt gcgccgcgcc
     1921 ctccacttcg agaaagaccg atgtcttgag tccatgcatg ggtcccagac ccggcacgtt
     1981 cagcggcttc gacggatcga tcacatcgaa ctggacttcc tgcttcaacc ggtaccccgg
     2041 cacataggcc tgtacgctcg cgaccattgc ttcgatgctc gcaagcagcg ccgcctgatc
     2101 cgcgagatca gatagcacga acaccgtgtc gcgcatgatg agcggcggct cagcaggatt
     2161 cagcacaatg atcgccttcc cgcgcgtggc gccgcccagc ttttcaatcg cgctgcgtgt
     2221 ggtctcagtg aactcgtcga tattcgcgcg cgtgcccggg cctgcggatt tgctcgatat
     2281 cgacgcgacg atctccgcat agtgcacctt cgccacccgc gataccgcag cgacgatggg
     2341 aatggtcgcc tgaccgccgc acgtgaccat attcatgttg gccgcgttct cggcttcaag
     2401 gttgatcgcg ggaatcacgt acgggccgat agccgcgggc gtcaggtcga tcacctggac
     2461 gccatgcgcc tggaggacat cgttgtgacg cttgtgagcg ccggccgatg ttgcatcaaa
     2521 gacgatgtcg atgtccttga acacgtcgag cttaagcaag ccgtccagac cctcggctgt
     2581 ggtcgccacg cccagccgtt gagctcttgc gaggccgtca gatgcggggt ccacgcccac
     2641 catcgcgccc atctccagat gctcgctgtt acgcatcacc ttgatcatca ggtcggtgcc
     2701 aatattgccc ggtccgatga ttgccacttt cacttttttg ttcatgctgt ttcccatgtc
     2761 cactgctaaa gggttcgggg ctaccgtctt gtttagccct tcacatggaa gccggcgctg
     2821 ccgaggcgct ccatgtccac agagatgtat tggcccggct tgatccattc ggcgggtgtg
     2881 gcgccccctg ccatgacgat ccagccagcc tgcaaaggct ctcccgcgag cgcggacagg
     2941 cgcgcggccg cgaccagcga gcgcaatgga tggccaagca aggcggccgt cgagccgacc
     3001 tgcaccacgc gtccatcgat gttcagcgtc aaccccaggt tggcgaaatc gatttgcgga
     3061 ctgcaccacg gcccgatcac g
//
LOCUS       DATGBK010000486         1984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_168006, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000486 DATGBK010000000
VERSION     DATGBK010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168006"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..122)
                     /locus_tag="VKJ77_06990"
     CDS             complement(<1..122)
                     /locus_tag="VKJ77_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HMC45052.1"
                     /translation="MSPVIPTLSVEKLQTHFFTAAGVAKAVDDVSFDVYPGEIVG"
     gene            complement(131..1045)
                     /locus_tag="VKJ77_06995"
     CDS             complement(131..1045)
                     /locus_tag="VKJ77_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006390494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45053.1"
                     /translation="MSTLSNILPRWTTNRDTRTGQALRGMFGRPAVALASLTCIALII
                     VAIFAPWLAPQNPYDLAALDIVDGRLPPGARGHLGHLFLLGSDALGRDMFAAMMFGLR
                     TSLGVGISSGAFALIVGTTLGLVAAYFGGWIDTLIMRTVDLMLGFPTILVALMTLAIL
                     GQGVSKVILALVIVQWAYFARTVRAVAAVESKKEYMEAALCLGFSHRRALFSQLLPNC
                     LAPVIVIAMVQVAAAISAEATLSFLGIGLPVTQPSLGLLIANGYQQLLAGFYWISVFP
                     GVLLVMLVFSMNMVGDGLREALNPRLQK"
     gene            complement(1047..1970)
                     /locus_tag="VKJ77_07000"
     CDS             complement(1047..1970)
                     /locus_tag="VKJ77_07000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018443574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45054.1"
                     /translation="MLTSVLVFCGVFAIGDPIQILVPADASPAEIAQAVHSLGLDQPM
                     WRQYMLFVEHALHGDLGRSFVFNQPSIQLIMERLPATLELAIVALVMALMIGLPLGLL
                     AGMKANSPVDRVIMGGSILGFSLPNFWQGIMLVLIFSVTLGWLPSAGRGHLGTLLGIH
                     TSLATRDGLIHLILPALNLSLFKMSLVTRLTRAGVRETLPLDYVKFARAKGLRERRII
                     FVHVLKNIMIPIVTVVGMEFGSLIAFATVTETIFAWPGVGKLIIDSIMRLDRPVVVAY
                     LLIVVAMFTLLNLLVDIIYSLLDPRVRLGGA"
BASE COUNT          449 a          604 c          615 g          316 t
ORIGIN      
        1 ccgacgatct cgccgggata gacatcgaag ctcacgtcgt caacggcttt tgcaacgccg
       61 gccgccgtga agaaatgggt ctgcaacttc tcgaccgata aagtaggaat gactggagac
      121 atgaggtttc ctatttctga aggcgcgggt tgagcgcctc gcgcaagccg tcaccgacca
      181 tgttcatgct gaagacgagc atgaccagca gcacgccggg gaacacgctg atccaataga
      241 agccggcaag caattgctgg tagccgttcg cgatcagcaa tccaagagag ggttgcgtca
      301 cgggcaagcc gatcccgaga aagctcaacg tggcttcagc ggagatggcg gccgccacct
      361 gcaccatcgc gatcacgatg acgggcgcga ggcagttggg cagcaactgg ctgaagagcg
      421 cacgccgatg actgaaaccc aggcacaacg ccgcctccat gtactccttc ttgctttcca
      481 cggccgcgac cgcgcgcact gtgcgggcga agtacgccca ttgcacgatc acgagcgcca
      541 ggatcacctt gctcacgccc tggccgagaa tggcgagcgt catcaacgcc acgaggatgg
      601 tcggaaagcc gagcatcagg tcgaccgtgc gcatgatcag cgtgtcgatc cagccgccga
      661 aatacgcagc caccagaccg agcgtcgtgc ccacgatcaa cgcaaacgcg ccgctcgaga
      721 tcccgacgcc aagactggtg cgcaggccga acatcatggc ggcgaacatg tcgcggccga
      781 gcgcgtcgct gcctagcagg aagagatgtc caagatggcc gcgtgcgccg ggaggcagcc
      841 tgccatcgac aatatcgagc gcggcgaggt cgtacggatt ctgcggtgcg agccatggcg
      901 cgaagatcgc cacgatgatc agcgcaatgc aggtcagcga cgcgagcgca acggcggggc
      961 ggccgaacat gccgcgcaat gcctgtcctg tgcgagtgtc gcggtttgtg gtccagcgtg
     1021 gcaggatgtt cgaaagcgtg ctcatgtcag gcacctccca gacgcacgcg cggatcgagc
     1081 agcgaataga tgatgtcaac cagcaggttc agcagcgtga acatggcgac cacgatcagc
     1141 agatacgcca cgaccactgg acgatcgagc cgcatgatgc tgtcgatgat cagcttgccc
     1201 acgcccggcc acgcgaagat ggtttcggtc accgtagcga acgcgatcag cgagccgaac
     1261 tccatgccga ccaccgtgac aatcgggatc atgatgttct tcagtacgtg gacgaaaatg
     1321 atccggcgct cgcgcaaacc tttggcgcgg gcaaatttca catagtcgag cggcagcgtt
     1381 tcccggacgc cggcgcgcgt caaccgggtc acgagcgaca ttttgaacag cgagagattc
     1441 agcgctggaa ggatcaggtg gatcagtccg tcgcgcgtcg cgaggctcgt atggatgccg
     1501 agcagggttc ccagatgacc ccgtcctgcc gagggcagcc agcccagtgt caccgaaaat
     1561 atcagcacca gcatgatgcc ctgccagaag ttaggcaggc tgaagccgag gatcgagccg
     1621 cccatgatca cgcggtcgac cggcgagttc gccttcatgc cggccagcaa tccaagaggt
     1681 agcccaatca tcaatgccat gacgagcgcc acgatcgcta gctcgagcgt ggccggcagg
     1741 cgttccatga tcagttggat cgacggttgg ttgaacacga acgagcggcc aagatcgcca
     1801 tgcagcgcgt gttccacaaa cagcatgtat tgcctccaca tcggctggtc gagacccagc
     1861 gagtggactg cttgcgctat ttctgccggg cttgcgtcgg cgggcacgag aatctggatt
     1921 ggatcgccaa tagcgaacac cccgcagaag acaagcaccg aggtcagcat caggatgccg
     1981 gcac
//
LOCUS       DATGBK010000487         3611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_283728, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000487 DATGBK010000000
VERSION     DATGBK010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3611
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283728"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VKJ77_07005"
     CDS             complement(<1..213)
                     /locus_tag="VKJ77_07005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004550717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HMC45055.1"
                     /translation="MNRPNPDELLGKLQREEEKRHRGRLKIFFGASAGVGKTYAMLLA
                     ARSRKQQGDDVVIGIVETHGRSETAAL"
     gene            complement(654..1628)
                     /locus_tag="VKJ77_07010"
     CDS             complement(654..1628)
                     /locus_tag="VKJ77_07010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HMC45056.1"
                     /translation="MTKAIRFDKTGGPEVMKWVDVEVGEPGKGEIRVKHHAVGLNFID
                     VYFRTGLYPMPLPGGLGMEAAGEVTAVGEGVTGFKVGDRVAYASRPPGAYAQERVMAA
                     QYVVRLPDAIAYEDAASVMLQGLTAQYLLRRTYRVKAGDTILIHAAAGGVGMLACQWA
                     KALGATVIGTVGSDEKAELAKAHGCDHPIVYTREDFTKRVREITNGAGVPVVYDSIGK
                     DTYTASLDCLAPLGMFVSFGNTSGPLPPIDSSEFAGRGSLYFTRPTLFSYIAKRSDLE
                     EMTSELFNVLSTGQVKTSVRQRYPLAEVAKAHEELEARRTTGSTILLP"
     gene            complement(1682..2068)
                     /locus_tag="VKJ77_07015"
     CDS             complement(1682..2068)
                     /locus_tag="VKJ77_07015"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008929 - methylglyoxal synthase activity
                     [Evidence IEA];
                     GO_process: GO:0019242 - methylglyoxal biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HMC45057.1"
                     /translation="MNPRVALIAHDMKKDDIVALAGEFAATLAQCRLVATGTTGARIA
                     AAHGLEVERKLSGPFGGDLQIGAELAEGRVDVVVFLRDPMTPQPHEPDINALVRACDV
                     HNVACATNLATARMILDDLKLRLDRV"
     gene            complement(2123..2902)
                     /locus_tag="VKJ77_07020"
     CDS             complement(2123..2902)
                     /locus_tag="VKJ77_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013339909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45058.1"
                     /translation="MDMGIKGRTALVCAASKGLGRGCAEALAAEGVNLVIVARTVGPL
                     EATAEHLRTSFGVNVTAVACDITTAEGHAAALAACPAPDILVNNAGGPPPGDFRQFTR
                     DDWIKALDSNMLTPIELIKRTLDGMIERGFGRIVNITSSSVKAPIDVLGLSNGARSGL
                     TGFVAGLSRKVAASGVTINNLLPGSFDTDRLVTTFEADAKANNISVEEAKKRRMSRLP
                     AGRFGNPEEFGAACAYLCSVHAGYITGQNLLIDGGAYPGTY"
     gene            3227..>3611
                     /gene="upp"
                     /locus_tag="VKJ77_07025"
     CDS             3227..>3611
                     /gene="upp"
                     /locus_tag="VKJ77_07025"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010091140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HMC45059.1"
                     /translation="MKQDSRFPNLFILNHPLIQHKLTHMRDKDTSTRTFRELLREITL
                     LMGYEITRNLPLTTKRVETPLVTVDSPVIAGKKLAIVPVLRAGIGMSDGLLDLIPSAR
                     VGHIGVYRAEDHRPVEYLVRLPPDLE"
BASE COUNT          695 a         1195 c          982 g          739 t
ORIGIN      
        1 taacgcggcc gtttcgcttc tgccatgcgt ttccactatg ccaatgacta cgtcgtcgcc
       61 ctgctgcttc ctgcttcgcg ccgccagcag catggcgtag gtcttgccga ctcccgccga
      121 cgcgccaaag aatatcttca gccgtccgcg atgacgcttc tcttcctctc tttgcagttt
      181 tccgagtagc tcgtctgggt ttgggcggtt cattttttag ctttttcgag caatcgcatc
      241 cgaggcgagg ttcggtttct tcgtttcaac atcaacatac tgacacgcgg ctttcccagt
      301 atgacgagcc ggttcgtttc aggtctccgg cgtccgatcc gatattgggt tgctgagtac
      361 tttccctaag tattgaacga tggcccgaac attaagcgcg ccgacgtaaa aggcgggtca
      421 aagatcggga tacggacgta aagattgtgt aaatggcgct gcggaagacc ttcacagcgg
      481 ggctttgtcg cggtggtctt acagcgggca tttgagtaac gcggatcgca agacggtccc
      541 gtccgatgcg tcacccgcta aatgcgcttg ttcgcattca tcgacctacc cgcgatggac
      601 ggcgcggcat gaaagaacgc cgcgtccgcc ccgtccgttt tctcacgccc taatcaaggc
      661 agaagaattg tcgaccccgt ggttcggcgc gcctccaact cttcgtgcgc ctttgccact
      721 tcggccagcg gataccgctg ccgcacgctc gttttcacct gccctgtact caacacattg
      781 aacagttcac tcgtcatctc ctcgagatcg ctgcgtttgg cgatatagct gaacaacgtg
      841 ggccgcgtga aatacagcga accacgcccg gcgaactcgg acgaatcaat gggtggcaac
      901 ggccccgatg tattgccgaa actcacgaac atgcccaacg gtgcaaggca gtcgagcgat
      961 gccgtatagg tgtccttgcc aatcgaatcg tagaccaccg gcacgcccgc gccgttcgtg
     1021 atctcacgca cccgcttcgt gaaatcctcg cgggtataga caatcggatg atcgcagccg
     1081 tgcgccttcg ctagttcggc cttctcgtcc gatccaaccg taccaatcac cgtcgcgccg
     1141 agcgccttcg cccactggca cgcaagcatg cctacgccgc ccgccgccgc gtggatcagg
     1201 atcgtatcgc cggctttcac gcgatacgtc cgtcgcagca gatattgcgc ggtcaggccc
     1261 tgcaacatca ccgacgctgc atcctcgtac gcgattgcat cgggaaggcg cacgacatac
     1321 tgcgccgcca tgacccgttc ctgcgcataa gcgcccggcg gccgcgacgc gtaagccacc
     1381 cggtcgccca ccttgaaacc tgtcacgcct tcaccgaccg cagttacctc gcccgccgct
     1441 tccatgccaa gtccaccggg cagcggcatg ggatatagcc cggtacgaaa gtacacgtcg
     1501 atgaagttca agccgaccgc atgatgcttc acgcgaatct cgcccttgcc cggttcgccc
     1561 acttcgacgt cgacccattt catcacttcc gggccaccgg ttttatcgaa tcgaattgcc
     1621 tttgtcaccc ttgtctcctt ttgccggcgt cagccggtca ctagtcacta ttcagcgcgg
     1681 cctaaacccg atccaggcgt agcttcagat catcgagaat catgcgtgct gtcgcgagat
     1741 tcgtcgcgca cgccacgttg tggacgtcgc acgcgcgcac cagcgcattg atgtccggct
     1801 cgtgcggttg cggcgtcatg gggtcgcgca ggaaaaccac cacgtcgacg cgcccctccg
     1861 cgagttcagc gccaatctgc agatcgccgc cgaacggtcc ggagagcttg cgctcgacct
     1921 ccagaccatg ggccgccgca atccgcgcac cggtcgtgcc ggtcgccacc aaccggcact
     1981 gcgccagcgt ggccgcgaat tcaccagcca gcgccacgat gtcatctttc ttcatgtcgt
     2041 gcgcaatcag cgcgacgcgt gggttcatcg aatgtctccc ggttgtgatg ttttatagga
     2101 ttatttttac gagattcggc gatcaatacg tgcccggata agcaccgccg tcgatcagca
     2161 ggttttgccc cgtgatatag ccggcatgga cgctgcacaa atacgcgcac gccgcaccga
     2221 actcctccgg gttaccgaag cggcccgctg gcagccggct catgcggcgc ttcttggcct
     2281 cttcaaccga gatgttgttc gccttcgcgt ccgcctcgaa cgtggtgacg agccggtcgg
     2341 tatcgaaaga tcccggcagc agattgttga tcgtgacacc gctcgccgcg accttgcgcg
     2401 acaaacctgc aacaaaaccc gtcaaccctg aacgcgcacc gttcgacaga cccagcacgt
     2461 cgataggcgc cttcaccgac gagctcgtga tattcacgat ccgtccaaaa ccacgctcga
     2521 tcatgccgtc gagtgtccgt ttgatgagct cgatcggcgt cagcatgttc gaatcaagcg
     2581 ccttgatcca gtcgtcgcgc gtgaattgcc ggaaatcccc cggcggagga ccaccggcgt
     2641 tgttcacgag aatatccggc gcaggacacg cagccagcgc tgcggcgtgc ccttcggccg
     2701 tggtgatgtc gcacgccacc gccgtcacat tcacgccaaa gcttgtacga agatgctcgg
     2761 ccgtggcttc gagcggcccc accgtgcgcg ccacgatcac gaggttgacg ccctcggccg
     2821 ccagcgcctc ggcacaaccg cgccccaaac ccttgctggc cgcgcacacg agcgccgtgc
     2881 gccccttgat tcccatgtcc attgctgtcc ctttctggtt gcccgcggtg aaaccggtga
     2941 aaaacgatta aaaccggggt agtgaagtcg tgtgccgaat cctggttcgc catccgttcg
     3001 tgcggaccgc gtgatgcaat tctagaagaa tgagggatcg gacgtcggcc gcgcaataaa
     3061 ccggatggcc tatcgcccgc aatctccgct ttaagcgcgc ctaatttggg taaactggcg
     3121 tcattgcttg agcaccgcca tgcaagaccg acgcggcttc agaaccgaac gaatcacccg
     3181 attcacccga atccacacct aatgccgcgg caaccgcgcg aattccatga aacaggacag
     3241 ccgctttccc aatctcttca tcctcaacca cccgctgatt cagcacaagc tgacgcacat
     3301 gcgggacaag gacacgtcca cgcgaacctt tcgcgagttg ctgcgcgaga tcacgctgct
     3361 gatgggttat gaaatcacgc gcaacctgcc gctgaccacg aagcgtgtcg aaaccccgct
     3421 ggtcaccgta gactcgcccg tgatcgctgg caagaagctg gctatcgtgc cggtgctgcg
     3481 ggcgggtatc ggcatgtcgg acgggttgct ggatttgatt ccgtcagcgc gggtcggcca
     3541 tatcggcgtg tatcgcgctg aggatcaccg gccagtcgaa tatcttgtgc gcctgccacc
     3601 cgatctggaa g
//
LOCUS       DATGBK010000488         1945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_144753, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000488 DATGBK010000000
VERSION     DATGBK010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144753"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(214..1209)
                     /locus_tag="VKJ77_07030"
     CDS             complement(214..1209)
                     /locus_tag="VKJ77_07030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoaspartyl peptidase/L-asparaginase"
                     /protein_id="HMC45060.1"
                     /translation="MNPTAVVAIHGGAGTILRTQMDPDAEQRYHASLNDILAAGQSVL
                     AAGGSALDVVSEAVRLLEDNPLFNAGRGAVFTADGTHELDASIMDGSTLEAGAICCVK
                     RVRNPILVARRVLEASEHVMFTGAGAEAFAVAQGFELVDPSYFHTDARHKQWLLARGQ
                     QRVMLDHDGATLSASSPDGDGEQPMPHEPIDPNRKFGTVGAVALDQHGHLAAATSTGG
                     VTNKQAGRVGDAPLIGAGCYADDATCAVSTTGSGEMFMRMVVAYDVAAQMAYRGVSLE
                     EAAADVVMKRLPRINGRGGLIAVDALGNVTLPFNTEGMYRGFARVGVAPVTAIYR"
     gene            complement(1206..>1945)
                     /locus_tag="VKJ77_07035"
     CDS             complement(1206..>1945)
                     /locus_tag="VKJ77_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HMC45061.1"
                     /translation="RGFEATLAPVERLRSAQESPASGDELLGASLEQAAVNLRLTRTD
                     INGAAADAAVEAILAARRVFVLGAGSSAFLAGLMEHGLMPYHNNVQSLAFVGGPTHAA
                     RRLFSAGEGDLVIGIAFPRYVDDTIQLARRAASLGARVLALTDSVNSPLGQFADLTLC
                     VRSERRLAANSDAAVLAVIEALCDAVAYRTKRSAKAAADMTEFVLPWLTKTPSGVSSS
                     SAPGSPNHPVRRARTSNTARPDKKPKR"
BASE COUNT          363 a          609 c          615 g          358 t
ORIGIN      
        1 gacaggttgc gcaccgcgtt gaaagccttg tcgccttggc ggaacgcaat cgaaagatcg
       61 tcaacggcga gcacgcattg cggcggcagg gtgtcgagac gcgagcgtgc aatgtgcggt
      121 gaaatcggca cgatgttttc ctcaggaggt gaacgcggct cgggcgatga ttcgcgcggt
      181 gcccaagcgt agaaccagac agatgaacga acgtcagcga tagatcgccg tgacgggtgc
      241 aacgcctacc cgcgcaaaac cgcggtacat accctcggta ttgaacggca acgtgacgtt
      301 gccaagtgcg tcgacggcga tcagtccacc gcggccattt atacgtggca ggcgtttcat
      361 cacgacatcg gccgcggctt cttccagcga taccccgcga tacgccattt gcgcagcgac
      421 gtcataagcg acgaccatcc gcatgaacat ctcgccggag ccggtcgtgg acacggcgca
      481 ggttgcatcg tcggcatagc agcctgcgcc aatcaacggg gcatcgccca cccgccccgc
      541 ctgcttgttg gtaacaccgc ctgtcgatgt tgcggcagca aggtgtccgt gctgatcgag
      601 cgcaaccgcg ccaaccgtac cgaactttcg attcggatcg atgggttcgt gtggcatggg
      661 ctgttctccg tcgccatccg gcgatgaggc tgaaagcgtc gcgccgtcgt gatcgagcat
      721 cacacgttgt tggccgcgtg caagcaacca ttgcttgtga cgggcatcgg tatggaagta
      781 cgaaggatcg acgagctcaa acccctgtgc cacggcaaat gcttcggcgc ctgcacccgt
      841 gaacatcaca tgttcgcttg cctcgagcac gcggcgcgcg accaggatcg gattgcgcac
      901 gcgctttacg caacagatcg cacccgcttc gagcgtgctg ccatccatga ttgaagcgtc
      961 gagttcatgc gtgccgtcgg cagtgaacac cgcgccgcgt cccgcattga acagcgggtt
     1021 gtcttcgaga agacgcacgg cctcgctcac gacgtcgagc gcgctgccgc cggcggccag
     1081 cacgctctgg cctgctgcca ggatgtcgtt caggctcgcg tggtagcgct gctcggcgtc
     1141 tggatccatc tgcgtgcgca ggatcgtgcc tgcgccgccg tgaatggcaa cgactgctgt
     1201 cggattcatc gtttcggctt tttgtcgggt cgtgcagtat tggatgtccg ggcccttctc
     1261 acgggatgat tcggcgagcc cggtgctgac gagctgctta cgccggacgg ggtcttggtc
     1321 agccacggca acacgaattc ggtcatgtcc gcggcagctt tggccgagcg tttggtgcgg
     1381 tacgccacgg cgtcacagag tgcctcgatc acggccagca ccgccgcgtc ggaatttgcc
     1441 gcgagccgcc gttctgatcg gacgcacagc gtcaggtccg cgaactgccc gagcggtgag
     1501 ttgacgctgt cggtcagggc gagcacgcgg gcacccaggc tcgcggcacg gcgcgcgagc
     1561 tggatcgtgt cgtcgacata acgcggaaat gcaatgccga tcacgagatc gccctcgcct
     1621 gcactgaaga gacggcgcgc tgcatgcgtt gggccgccaa cgaacgcaag cgattgcaca
     1681 ttgttgtggt agggcatcag accatgctcc atcagcccgg ccagaaatgc gcttgagcct
     1741 gctccgagca cgaacacccg gcgcgcagca aggatggctt ctaccgctgc atcggccgcg
     1801 gcaccgttaa tgtcagtgcg tgtcagacgc aaattgaccg cggcctgttc aagcgacgcg
     1861 ccgagcaatt cgtcaccgct cgcgggcgat tcctgtgctg aacgcaaacg ctcaaccggt
     1921 gcaagcgttg cttcgaaacc gcgca
//
LOCUS       DATGBK010000489         2621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_5640, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000489 DATGBK010000000
VERSION     DATGBK010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5640"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..500
                     /locus_tag="VKJ77_07040"
     CDS             <1..500
                     /locus_tag="VKJ77_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004527058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC45062.1"
                     /translation="EFAVRNGCHVQVTSLAAGDGEVVNLMDRFNAACKANPDVPRPQI
                     MMLMHTFVGADAAEVDAAVADLSRFYCYFSKWFKNERPVKQGFIEPLTEADIASFPQY
                     TPEQIRKNLVIGQPADVIDRLKQYEELGFDQYSFWLDSNMSFERKRRSLELFISDVMP
                     AFDAR"
     gene            516..1988
                     /locus_tag="VKJ77_07045"
     CDS             516..1988
                     /locus_tag="VKJ77_07045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HMC45063.1"
                     /translation="MLQKFQHYIDGEFSDASQTFDSINPATGEVWATMPAASAADVDR
                     AVSAADRALFSPEWANLNASQRGKLLYGLADLVAANAQELAELETADTGKIIRETRSQ
                     IGYVAEYYRYYAGGADKIQGAYLPVDKPDMEVFLRREPVGVVAGIVPWNSQLFLSAVK
                     IGPALAAGCTIVIKASEEGPAPLLAFARLIHEAGFPAGVVNILTGFGADCGHALTTHP
                     LVAKIAFTGGPETARHIVRNSAENLAATSLELGGKSPVLVFDDADVDSVSNAIIAGIF
                     AATGQSCVAGSRLLVQRGIRERLLAKLVEKARAIKIGDPQNVDTEMGPLATAKQRDHI
                     ESVLAASLAAGAKLLTGGHRPEGMGKGFFFEPTIVECATSDVPSVAQELFGPVLSVMS
                     FDTEEQALALANDTRYGLASGVFTRDLTRAHRLTRRLRAGIVWVNTYRAVSPIVPFGG
                     YQLSGLGREGGLDAVLDYTRTKSVWIRTSDEPIADPFVMR"
     gene            2006..2320
                     /locus_tag="VKJ77_07050"
     CDS             2006..2320
                     /locus_tag="VKJ77_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004521451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HMC45064.1"
                     /translation="MYYEIRTYKIRTGAVPAYLKLVEEEGIALQKHHLGELVGYFFSE
                     IGPLNQIVHMWAYTSLDDREARRQRLAEDPAWQAFAPKIQALLETMESKIMKPAAFSP
                     LK"
     gene            2383..>2621
                     /locus_tag="VKJ77_07055"
     CDS             2383..>2621
                     /locus_tag="VKJ77_07055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45065.1"
                     /translation="MQQPLNLHALVRALIVTAVVSVTAPVFAAAAPIVFASWGGTTQS
                     AQQKEWAVPFTQASGVQVLMDGPTDYGKLKAMVDSG"
BASE COUNT          527 a          752 c          828 g          514 t
ORIGIN      
        1 atgagttcgc ggtgaggaac gggtgccatg tgcaggtcac gtcgctggcg gcgggtgacg
       61 gcgaagtggt gaacctgatg gaccgtttca acgcggcctg caaggcgaac cccgacgtgc
      121 cgcgtccaca gatcatgatg ctgatgcaca ccttcgtggg cgcggacgcc gcggaagtcg
      181 atgcggctgt cgcggacctg agccgcttct actgttattt cagcaagtgg ttcaagaacg
      241 agcggccggt gaagcagggg ttcattgaac cgctgacaga agccgacatc gcttcgttcc
      301 cgcagtacac cccggagcag attcgcaaga accttgtgat cggccagccc gccgatgtca
      361 tcgaccggtt gaaacagtat gaagaactcg gcttcgatca atacagcttc tggctcgaca
      421 gcaacatgag ctttgagcgc aagcgccgtt cgctggagct gtttatttcc gacgtgatgc
      481 ccgcgttcga tgcccgctaa accggagcag atgacatgtt gcagaagttc cagcattaca
      541 tcgatggcga attcagcgat gcctcgcaga cctttgacag tatcaatccg gcgaccggtg
      601 aagtgtgggc aaccatgccc gcagcgagtg cggcggacgt cgaccgggca gtcagtgcgg
      661 ccgaccgcgc gctgttctcg cccgagtggg ccaacctgaa tgcaagccag cgcggcaagc
      721 tgctgtacgg gctcgccgat cttgttgcgg ccaacgcgca ggaactggcc gagctggaga
      781 cggccgatac cggcaagatc attcgcgaga cgcgcagcca gattggatat gtcgccgagt
      841 attaccgcta ttacgcgggc ggtgcggaca agatccaggg agcgtacctg cccgtcgaca
      901 agccggacat ggaagtgttt cttcgacgcg agccggtggg tgtcgtcgcg ggaattgtgc
      961 cgtggaactc gcaactattt ttgtcggcgg tgaagatcgg acccgcactt gccgcgggtt
     1021 gcacgatcgt tatcaaggcg tcggaagagg gccctgcacc gttgctcgcg tttgcgcgcc
     1081 tcattcacga ggctggcttt ccggcaggcg tggtgaacat cctgacgggt tttggcgccg
     1141 attgcgggca cgcgctgacc acccatccgc tcgtcgcgaa aatcgcgttt actggcggtc
     1201 ctgaaacggc gcgccatatc gtgcggaact cggctgagaa cctcgcggca acgtcgttgg
     1261 aactgggcgg gaaatcgccg gtactggtct tcgacgacgc cgacgtggac agtgtcagca
     1321 atgcgatcat cgcagggatt tttgcagcga ccggtcagag ttgcgtcgcg ggttcgcggt
     1381 tgctcgtgca gcgcggtatt cgcgaacggt tgctggcgaa actggtcgag aaagcgcggg
     1441 cgatcaagat aggcgatccg cagaacgtag atacggaaat gggcccgcta gctacggcca
     1501 aacaacgcga tcatattgag tcggtgctgg cggcaagcct cgccgcgggc gcgaagctgc
     1561 tgacgggagg gcatcgtccc gaaggcatgg gtaaaggatt tttcttcgag ccgaccattg
     1621 tcgaatgcgc cacgtcagat gtgccgagcg tagcgcagga gctgttcggt cccgtgctca
     1681 gcgtgatgag tttcgatact gaagagcaag cacttgcgct tgcaaacgac acgcgatacg
     1741 ggcttgcttc aggggtcttc acgcgcgacc tgacgcgcgc tcaccggctg acacgcaggc
     1801 ttcgcgccgg cattgtctgg gtgaatacct atcgcgcggt ttcgcctatc gtcccgttcg
     1861 gtggttacca gttgagcggt cttggacgcg aaggtggact cgatgccgtg ctcgactaca
     1921 cccgtaccaa atccgtgtgg atccggacct cggacgagcc tatcgccgat cccttcgtca
     1981 tgcgttgaag acagataaag ccgccatgta ctacgaaatc cgcacttaca agatccgcac
     2041 cggtgcagtt ccggcgtacc tgaaactggt cgaagaagaa ggcatcgcgt tgcagaagca
     2101 tcatctggga gaactcgtgg gctacttctt ctccgagatc gggccgctca accagatagt
     2161 ccacatgtgg gcctacacca gcctcgatga ccgcgaagcg cgtcgtcagc ggctggcaga
     2221 agaccccgcg tggcaggcct tcgcaccgaa gattcaggcg ctgctggaaa ccatggaaag
     2281 caagatcatg aagcccgctg cattttcgcc gctcaagtaa aaccagccgt tcaagcctag
     2341 tcctctcgaa gccagccgtt tccttttcaa ggagcagtcg tcatgcagca acctttaaat
     2401 ttgcacgcct tggtgcgtgc attgatcgtt accgcagttg tttcggttac cgcgcccgtg
     2461 ttcgcggccg ccgcgccgat cgtgttcgcc agttggggcg gcacgacgca atcggctcaa
     2521 cagaaagagt gggcggtgcc ctttacccag gcatcgggag tccaggtgct gatggacggg
     2581 ccgaccgatt acggcaagct caaggccatg gtcgacagcg g
//
LOCUS       DATGBK010000490         1993 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_329854, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000490 DATGBK010000000
VERSION     DATGBK010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1993
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329854"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(82..1236)
                     /locus_tag="VKJ77_07060"
     CDS             complement(82..1236)
                     /locus_tag="VKJ77_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010104297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HMC45066.1"
                     /translation="MAFIFYVTHIHLGYDALAMLDSECTRVGIKRPLIITDKGVLAAG
                     LVSQTVQALNLDAGAVPIFDETPSNPTEAMVMKAAALYKSEGCDGLIAVGGGSSIDLA
                     KGVAIMATHPGTLTEYATIEGGSNKITAEAAPLIAVPTTSGTGSEVARGAIIILDDGR
                     KLGFHSWHLLPKSAVCDPTLTLGLPPMLTAATGMDAIAHCIETFLAPAFNPPADGIAL
                     DGLERAWASIERATHDGQDRDARLNMMSASMQGAMAFQKGLGCVHSLSHPLGGLVVNG
                     RTGLHHGTLNAVVLPAVLRFNESAPSVVADKRFARMRRVMNLAADADIAQAIHDMTER
                     LGLPTRLSQMGVEQDMFDKVIKGALADHCHKTNPREASADDYRRMLQESF"
     gene            complement(1338..1868)
                     /locus_tag="VKJ77_07065"
     CDS             complement(1338..1868)
                     /locus_tag="VKJ77_07065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HMC45067.1"
                     /translation="MIEYHFCPRDANKLVERADASHEGGRVRLACPDPECGFVHWNNP
                     LPVVAAIVEYEGKILLARNAAWVEGMFALITGFLENGETPEEGIAREVLEETSLVAQS
                     VELVGVYEFIRKNELIIAYHVKANGTINLSPELLEYRLVEPAKLRPWRAGTGHAVAEW
                     MRRRGLAVEYVDRPGQ"
BASE COUNT          368 a          641 c          603 g          381 t
ORIGIN      
        1 atcgttatcg gaccagcgcg taacgatcga caggaaatgc ggataatccg cgcgcgtcgt
       61 tgggacaggg cggctcatga attagaacga ctcctgcagc attcgccgat aatcgtccgc
      121 actcgcctcg cgcggattgg tcttgtggca atgatcggca agcgcaccct tgatcacctt
      181 gtcgaacatg tcttgctcta cgcccatttg cgacaggcgc gtcggcaggc cgagacgctc
      241 ggtcatatcg tggatggcct gagcaatatc ggcatcggcg gcgagattca tcacgcggcg
      301 catccgtgca aaacgcttgt cagccaccac gctcggcgca ctttcgttga agcgcagcac
      361 ggccggcaga acaaccgcat tcagcgtgcc gtgatgcagc ccggtccgtc cgttcacgac
      421 cagtccgccc agcggatgcg acagcgaatg cacgcacccc agacccttct ggaacgccat
      481 ggcgccctgc atcgatgcac tcatcatgtt caagcgcgca tcgcgatcct gaccgtcgtg
      541 cgtcgcccgt tcaattgatg cccacgcgcg ctccagccca tccagcgcga tgccgtcagc
      601 gggcggattg aacgccgggg cgagaaatgt ttcgatgcaa tgcgcgatcg catccatgcc
      661 cgttgcagcg gtgagcatgg gcggcaaacc cagcgtcagc gtcggatcgc aaacggccga
      721 cttgggcaac agatgccacg agtggaagcc gagcttgcga ccgtcatcaa gaatgatgat
      781 cgccccgcgc gccacttcgc tgccggtgcc cgaggtggtc ggcacggcga tcagcggcgc
      841 ggcctcagcg gtgatcttgt tgctaccgcc ttctatggtc gcgtactccg tcagcgtccc
      901 cgggtgggtc gccatgatcg cgacgccctt cgccagatcg atggacgaac cgccgcccac
      961 ggcgatcagg ccatcgcagc cttcgctttt gtacagcgcg gcggctttca tcaccatcgc
     1021 ttcagtagga ttcgacgggg tctcgtcgaa gatgggaaca gcgcccgcat ccaggttcag
     1081 cgcctggacg gtttgcgaca ccagccctgc ggccaggacg cctttgtccg tgatgatcag
     1141 cgggcgcttg atgccgacgc gcgtacattc gctgtcgagc atagcgagcg cgtcgtaacc
     1201 gaggtggatg tgggtaacgt agaagatgaa ggccatgacg tgtgtccgcg gttgagtgag
     1261 gcgtctggca tgttaggagt ccagctggag tccgtcaatc cgcgcggacg ccatgtatcg
     1321 tatgcgcttt acggacttta ctgccccgga cggtccacat attccacggc caggccgcgg
     1381 cggcgcatcc attcggccac agcatggccg gttcccgcgc gccagggtct gagcttcgcc
     1441 ggctcgacca gacgatactc aagcagttcc ggcgacaggt tgatggttcc gttcgccttc
     1501 acgtgatacg caatgatcag ttcgttcttg cggatgaatt cgtatacgcc aaccagttcc
     1561 accgattgcg ccaccagcga cgtttcttcg agtacttccc gcgcgatgcc ctcctcgggc
     1621 gtctcgccgt tctcgagaaa gcccgtgatc agcgcgaaca tgccctcgac ccacgccgcg
     1681 ttgcgcgcga gcaggatctt gccctcgtac tccacgatcg ccgcgaccac cggcagcgga
     1741 ttattccagt gcacgaagcc gcattccggg tccggacacg cgagtcgcac gcggccgcct
     1801 tcgtggcttg catcggcacg ttcaaccagc ttgttggcat cgcgtggaca gaaatggtat
     1861 tcgatcatgg tctggggtca gcggatctaa aaggttagtg gaatcagagg gcggcggaaa
     1921 gcgcgcggat ctcggcggcg aactgctcca ccgtttccgg cagcgtgtcc cacgcacaca
     1981 tcagccggca gcc
//
LOCUS       DATGBK010000491         2443 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_283737, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000491 DATGBK010000000
VERSION     DATGBK010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283737"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..832
                     /locus_tag="VKJ77_07070"
     CDS             17..832
                     /locus_tag="VKJ77_07070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0055072 - obsolete iron ion homeostasis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-interacting protein"
                     /protein_id="HMC45068.1"
                     /translation="MQNRPDLAVGRVRHQLKFRLAQVKRVQPLTPHLVRITLSGDDLH
                     DFESASFDDHIKVFFPPPGADKPVMPTAGPNGPVFPDDQPRPIARDFTPRRYDREACE
                     LDIEFALHEAGPAATWAAQAKVGQYLGIGGPRGSFTIPTGFDWHLLIGDETALPAIAR
                     RLEELPPGTRVAALIEVEDPSARIDFTTQTDLYAEWRYRSESDFPGGALLLALREMYL
                     PTGEGYVWAAGEATIMRAVRQHLCAERGVDKTRIRAASYWKRGAEAVHENIDD"
     gene            885..2138
                     /locus_tag="VKJ77_07075"
     CDS             885..2138
                     /locus_tag="VKJ77_07075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013343022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45069.1"
                     /translation="MYSLDASRERRLLWLLALTQFTIIMDFMVMMPLGPQIMRSFQIS
                     PAAFATAVSAYSWCSGLSGLLAATYIDRFDRRRLMLAVYALFALSNLACACATSFPML
                     LIARAFAGITGGVLGSVIMAIVSDVIPAARRGAATGTIMTAFSLAAVAGVPAGVLLGA
                     HFGWFTPFILLVGLSVVIWLAGMQIVPSLTEHLSRKQPPLGSVLPTLWRLVSNPRNAN
                     AFALTFIVMVSQMLVIPFISPMLVANHGVAPAQLSWLYMAGGAATFFTARLVGRLSDR
                     YGSRRMFRLLVVLSLAPVLFITHLPSLPFIAMVLLFPVFMVIVSGRMVPMQALLTTVP
                     EPSNRVAFLSTNSALQALGAGCGAWLGGLFLSFDAHGYIRGYGVNGLLAVALVSFAAI
                     WVGRVKAASERAVAPPISAEPIGEA"
     gene            2223..>2443
                     /locus_tag="VKJ77_07080"
     CDS             2223..>2443
                     /locus_tag="VKJ77_07080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020205974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC45070.1"
                     /translation="MDYVELPEKSRDRTILELRDFSRKLVRELGFMRNTLADSDLAPS
                     AVHAVIEIGLAPGLQARDLADTLRLDKSNT"
BASE COUNT          410 a          770 c          741 g          522 t
ORIGIN      
        1 ctcaagagaa cactcaatgc aaaacagacc cgatctggcg gtcggccgcg tccgccatca
       61 acttaaattc cgcctggctc aagtcaagcg cgttcaaccg cttacgcccc acctggtgcg
      121 catcacgtta agcggcgacg atctccacga ctttgaatcc gcgtccttcg acgaccacat
      181 caaggtcttc tttccgccgc ccggagccga caaaccggtc atgcccacgg ccggcccgaa
      241 tggcccggtg ttcccggatg accagccgcg gccaatcgca cgcgacttca ccccgcgccg
      301 atacgatcgc gaagcatgcg agctcgatat cgagttcgcg ctgcatgagg cgggacccgc
      361 cgcgacatgg gcggcgcaag cgaaggtagg gcagtatctg ggaatcggcg gcccacgcgg
      421 ttccttcacg attcccacgg gtttcgactg gcatctgctg atcggcgacg agaccgcgct
      481 ccccgccatt gcacgtagac tggaagagct gccgccggga actcgcgtgg ccgcgctgat
      541 cgaagtggaa gatccgtcgg cacgcatcga tttcacgacg cagaccgacc tgtacgccga
      601 atggcgctac cgcagcgaat cagacttccc cggtggggcc ttgttgctgg ccttgcgcga
      661 aatgtatctg ccgaccggtg agggctatgt ctgggccgcg ggtgaagcca cgatcatgcg
      721 tgccgtacgc cagcacctgt gcgcggagcg gggtgtcgac aagacccgga ttcgcgcggc
      781 aagctactgg aaacgcggcg ccgaagcggt tcacgaaaac atcgacgact gacttgtgac
      841 ttctccgctt tagccgctcg aaaaaattta ataaggatcg ctatatgtat agtctagatg
      901 cgagtcgcga gcggcgcctt ctctggctgc ttgcgcttac gcaattcacc atcatcatgg
      961 acttcatggt gatgatgccg ctcggcccgc aaatcatgcg gagctttcag atatcaccgg
     1021 ccgcgttcgc gaccgctgtt tcagcctatt cgtggtgttc cggtctatcg gggctgcttg
     1081 ccgccactta cattgatcga ttcgatcgac gccgcctcat gttagcggtc tatgcgctgt
     1141 tcgcgctgtc gaaccttgcg tgcgcctgcg ccactagttt tcccatgctg ctgatcgcgc
     1201 gcgcttttgc gggtatcacc ggcggcgtgc tgggatcggt catcatggcg atcgtcagcg
     1261 acgttattcc cgccgcccgc cgcggcgccg cgaccggcac gatcatgacg gccttttcac
     1321 tcgccgcagt ggcgggcgtc ccggccggtg ttttgttggg cgcgcacttc ggctggttca
     1381 cgccgttcat cttgctggtg ggtttgtcgg tcgtgatctg gctggccgga atgcagatcg
     1441 tgccttcgct caccgaacat ctaagccgca agcaacctcc gttaggcagc gtgctgccta
     1501 cgctgtggcg gttggtgtcg aacccgcgta acgctaacgc gttcgcgctt acgttcatcg
     1561 tgatggtgtc gcagatgctg gtgatcccgt tcatctcgcc catgctcgtg gccaaccacg
     1621 gcgtcgcccc agcacaattg tcatggcttt acatggcggg gggcgccgcg acgttcttca
     1681 cagcgcggct tgtcggcagg ctctccgacc gttatggcag ccgccggatg ttccgcctgc
     1741 tggtagtgct gtccctcgcg ccggtgctgt ttatcacgca cctgccgagc ctgccgttca
     1801 tcgcaatggt gctgctgttc ccggtgttca tggtgatcgt gtccggccgc atggtgccga
     1861 tgcaggcgtt gctgaccacc gttcccgaac cgtccaaccg cgtcgcattc ctcagcacga
     1921 acagcgcgct gcaagcactc ggtgccggtt gcggcgcttg gctcggcgga ctgttcctgt
     1981 cgttcgatgc gcatggctat atccggggtt atggcgtcaa cggcctgctg gctgtcgcgc
     2041 tcgtgtcatt cgcggcgata tgggtcggcc gcgtgaaagc ggcgtcggag agagctgttg
     2101 caccgcccat ttccgcagag ccgattggcg aagcgtagtc gtttcatcag gattcggccg
     2161 ggcttgaata agttgcgcct cgcaagtata ttggttgcga ggcgcaactt attggagcag
     2221 ccatggacta tgtcgaattg ccggagaaat cgcgggaccg cacaatcctt gagcttcgcg
     2281 acttttcgcg aaagctggta cgcgagcttg gtttcatgcg caatacactg gccgacagcg
     2341 acctcgcgcc gtcggccgtt cacgccgtaa ttgaaattgg cctcgcgccg gggcttcagg
     2401 cgcgcgacct ggccgacacg ctgcggctcg acaagtcgaa cac
//
LOCUS       DATGBK010000492         1722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_144795, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000492 DATGBK010000000
VERSION     DATGBK010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144795"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            46..1650
                     /gene="pcnB"
                     /locus_tag="VKJ77_07085"
     CDS             46..1650
                     /gene="pcnB"
                     /locus_tag="VKJ77_07085"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:1990817 - poly(A) RNA polymerase activity
                     [Evidence IEA];
                     GO_process: GO:0006378 - mRNA polyadenylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HMC45071.1"
                     /translation="MIKKLIRKLFGQESAKEETPATAPLSDDVKPARKSTRKKAAPAV
                     AKRDPNVPVILAADVHGIDPSLISKNAIRVTEGLQQGGHRAFIVGGAVRDLLLNVAPK
                     DFDVATDATPDQVQKLFRRARIIGRRFQIVHVQFGQDIIETSTFRALVDTPADAPPSP
                     PPPRLRRGEMDTRTHAVDASGRVLRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDY
                     HDGMADIRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIEPATRAPIAELADLI
                     SNVPAARLFDEMLKLLLSGHALACLTRLRAEGLHHGVLPLLDVIFESPHGEKFITLAL
                     TNTDERVRAGKGVSPGFLFATLLWNDMQTRWEQFTAAGEFPVPALHRAMDDVLDMQTE
                     KLAIHKRFSSDMREIWGLQLRLEKRSGRSAMKLLEHQRFRAGYDFLLLRCESGELDAS
                     VGQWWTDFIEGDAAARESLLSQGGKDRAPKKRRRRSSNAKSRRPGDGIEGGASTVEEG
                     SARDNREERDVRDARYGDESGGQRDD"
BASE COUNT          350 a          533 c          540 g          299 t
ORIGIN      
        1 atgcgcaggt ccgcggctgg cgcatcctgg aaatcttctc cccacgtgat taaaaaactc
       61 atccgcaagc tgttcggcca ggaaagcgcc aaagaagaga ccccggccac cgccccgctc
      121 tccgacgatg taaaacccgc ccgcaagagc acgcgcaaga aagcggctcc cgccgtggcg
      181 aagcgcgacc ccaacgtgcc ggtgatcctg gcggcggacg tgcacggcat tgacccatcg
      241 ctgatctcga agaacgcgat tcgcgtgacc gaaggcctgc agcaaggcgg gcatcgtgcg
      301 tttattgtgg gcggcgctgt gcgcgacctg ctgctgaacg tcgcgccgaa agatttcgac
      361 gttgcaacgg acgccacgcc cgaccaggtg cagaagctgt tccgccgcgc gcgcatcatt
      421 ggccgccggt tccagatcgt gcacgtgcaa ttcgggcagg acatcatcga gacgtctaca
      481 ttccgcgcgc ttgttgatac tcccgccgac gcaccgccct caccgcctcc gccccgtctg
      541 cggcgcggcg agatggacac gcgcacgcat gcagttgatg caagcggccg cgtgctgcgc
      601 gacaacgtgt ggggcgagca gcacgaagac gccacgcgcc gcgacttcac catcaacgcg
      661 atgtattacg atccggcgac gcaaaccgtg ctggattatc acgacggcat ggctgacatc
      721 cgcgcgcgtt tgctgcgcat gatcggcgac cctgccacac ggtaccgcga agacccggtg
      781 cgcatgctgc gtgtcgtgcg ttttgcagcg aagctcggct tcgagatcga gcccgccacg
      841 cgcgcgccga tcgcagaact agccgacctg atcagcaacg ttccggcagc ccgtctcttc
      901 gatgaaatgc tcaagctgct gctctcaggc cacgcgctcg cgtgcttgac gcggctgcgc
      961 gcggaaggtt tgcatcacgg cgtcttaccg ctgctcgacg tgattttcga atctccgcac
     1021 ggcgagaaat tcatcacgct cgcgttgacc aataccgacg aacgcgtgcg tgccggcaag
     1081 ggtgtatcgc caggcttcct gttcgccacg ctgctctgga acgacatgca gacgcgctgg
     1141 gagcaattca cggcggccgg tgaattcccc gtgcccgcac tccatcgcgc gatggacgac
     1201 gtgctcgata tgcagaccga aaaactcgct atccataagc gcttttcatc ggatatgcgg
     1261 gagatttggg gcctgcaact tcggctcgaa aaacgctcgg gcagaagcgc aatgaagctg
     1321 ctggaacacc aaaggtttag ggcgggttat gatttcctcc tgctgcgatg cgaatccggc
     1381 gaactggatg catcggttgg tcagtggtgg acggatttca ttgaagggga cgctgccgcg
     1441 cgagagtcac tgctttcgca aggcgggaag gaccgggcac ccaagaaacg acggcggcgt
     1501 agcagcaacg ccaaaagccg caggccgggt gacggaatag agggcggcgc gagcaccgta
     1561 gaagaagggt cagctcgcga caatcgcgaa gagcgtgatg tgcgtgatgc gcggtatggc
     1621 gacgaaagcg gtggccagcg cgacgattga cacggaccgt gcgcgtgttt tgatcatttc
     1681 gatcaacgcg cgtgagtcgt gtttcgccga acgacagttg ta
//
LOCUS       DATGBK010000493         2314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_75411, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000493 DATGBK010000000
VERSION     DATGBK010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75411"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..301
                     /locus_tag="VKJ77_07090"
     CDS             <1..301
                     /locus_tag="VKJ77_07090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HMC45072.1"
                     /translation="LRNSATRQVFFHNGVYHSLDDVMSFYNDRNTAPQKFYPKSADGK
                     VNKYDDLPAKFHANIDVTDAPFDRKFGDKPAMTDQEMKDIIAFLHTLNDGYHKGS"
     gene            complement(311..493)
                     /locus_tag="VKJ77_07095"
                     /pseudo
     CDS             complement(311..493)
                     /locus_tag="VKJ77_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014897556.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(512..1546)
                     /locus_tag="VKJ77_07100"
     CDS             complement(512..1546)
                     /locus_tag="VKJ77_07100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006027108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HMC45073.1"
                     /translation="MEALVLEEARRISLRPFTLPQVVGARDVRIRINTVGICGSDIHY
                     YQHGRIGPFVVNEPMVLGHEAAGTVIQIGDEVKHLKVGDRVCMEPGVPDMESRASREG
                     MYNLDPSVRFWATPPVHGCLTPFVVHPAAFTFKLPDNVSFAEGAIVEPLAIGMQAATK
                     AAIKPGDVAVILGAGTIGMMCALAALAGGCSRAIVCDLVPEKLALIGGVQGVTAVNIR
                     DQRVQDVVSELTDGWGANVVFEASGNEKAFDGIVNLLCPGGCLVLVGMPQHAVPIDIV
                     AVQIKEVRIESVFRYANMFPRAIQLIASGRLDVKPFISRSFAFADGIKAFEEAASGNP
                     NDVKVQIILE"
     gene            complement(1583..>2314)
                     /locus_tag="VKJ77_07105"
     CDS             complement(1583..>2314)
                     /locus_tag="VKJ77_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45074.1"
                     /translation="EFAGKTVLVTGAGKGIGYATAILMAERGAHVVALSRSRSDLDAL
                     SNTIHCKTITVDLADAAATLAAVQQASEAQPIDLLVNCAGIVELEPFLDTSVDSFDRT
                     MAVNVRAAMIVAQAYARCVIARGAGGAIVNVSSMAAQVGTPLHAAYCASKAALDALTR
                     VMAVELGVHGIRVNTVNPVVTLTPMAEKVWSEPAKSAPMLARIPLQRFVQPDEVARTI
                     AYLLSSDSSMVNGVSLAVDGGFQAG"
BASE COUNT          457 a          745 c          674 g          438 t
ORIGIN      
        1 gctccggaac tccgctacac ggcaggtgtt cttccataac ggcgtctatc attcgctcga
       61 cgacgtcatg tcgttctaca acgatcgcaa taccgcgccg caaaagttct atccgaagag
      121 tgccgacggc aaggtcaaca agtacgacga tctgccggca aagttccacg caaacatcga
      181 cgtgacggat gcgccgtttg accgcaagtt cggtgacaag cccgcgatga cggatcagga
      241 gatgaaggac atcattgcgt tcctgcatac cctgaacgac ggttatcaca agggaagctg
      301 aagcactcgg tcagctcttg acgagcttga tgcttgaggc gtccgcggtc aggtaatcga
      361 ccgtggcgcc gaagcggtcc ttgaagttgg tccgcacgat cgggtccagc gcggcctcta
      421 ccttgtcgcg aaccgggctt tcccagtccc ccgcgtgctg gaagttgctc atgatgtagg
      481 tccagccgtt gatcgggtta aaacgcccac gctattccag gatgatctga accttcacgt
      541 cgttggggtt gccgctggcg gcttcctcga atgccttgat gccgtccgcg aaggcaaacg
      601 agcgcgagat gaacggcttg acgtcgagtc tgcccgatgc gatcaactgg atcgcgcgcg
      661 ggaacatgtt ggcgtagcgg aacaccgact cgatccgcac ctccttgatc tgcaccgcga
      721 caatatcgat cgggacggcg tgttgcggca tcccgaccag gacgagacag ccacccgggc
      781 acagcaagtt gacaatgccg tcgaacgctt tttcgttgcc gctggcttcg aacacaacat
      841 tcgcgcccca gccgtcggtg agttccgaca ccacgtcctg tacgcgctgg tcgcgaatgt
      901 tgactgcggt cacgccctgc acgccgccaa tcaacgcgag cttttccggc acgagatcgc
      961 atacgatcgc gcggctgcat ccccctgcga gcgcggccag cgcacacatc atgccgatcg
     1021 tgccggcacc gagaataacg gctacgtccc ccggttttat cgccgctttc gttgccgcct
     1081 gcatgccgat agccagcggc tcgacaatcg cgccttccgc aaaactcacg ttgtccggca
     1141 gcttgaacgt gaacgccgcc gggtgcacga cgaacggcgt caggcaacca tgcaccggtg
     1201 gggtagccca gaaacgcacg ctcggatcga ggttgtacat cccctcgcgc gacgcgcgtg
     1261 actccatgtc gggtacgccg ggttccatgc agacacgatc gccgaccttc agatgcttca
     1321 cttcatcgcc gatctggatc acggttcccg ccgcttcgtg acccaggacc atcggctcat
     1381 tgacaacgaa cggcccgatc cggccgtgct ggtagtagtg aatatcgctg ccgcaaatgc
     1441 ccaccgtatt gatgcgaatg cggacgtcgc gcgcgccgac tacttgcggc aacgtgaacg
     1501 ggcgcaagct gatgcggcgc gcttcttcga gaaccagtgc ttccatgatt gaagccctct
     1561 gctaagagta agagtagtta aatcagccgg cctgaaaacc gccgtctaca gcaaggctga
     1621 cgccattgac catgctcgag tcgctactga gcaggtaggc gatcgtgcgc gccacttcat
     1681 cgggctgcac gaatcgttgc aagggaatgc gggcgagcat gggcgccgat ttcgccggct
     1741 cgctccagac tttctccgcc atcggcgtca gggtgacgac cgggttgacc gtgttgacgc
     1801 gaataccatg cacgccaagt tcgaccgcca tcacgcgggt cagcgcgtcg agtgcagcct
     1861 tcgacgcgca atacgcggcg tgcagcggcg taccgacctg cgctgccatg ctcgacacat
     1921 tgacgatcgc accgcctgcg ccccgcgcga tcacacagcg cgcatatgcc tgtgcgacga
     1981 tcatcgcggc gcgcacgttg accgccatgg tgcgatcgaa ggaatcgacc gaagtgtcga
     2041 gaaatggctc cagctccacg atgcccgcgc agttcaccag cagatcgatg ggctgcgcct
     2101 cgcttgcctg ctgcaccgct gcgagcgtgg cggcggcatc tgcgagatcg acggtgatcg
     2161 tcttgcaatg gatcgtgttg ctcagtgcgt cgaggtccga ccgtgatcgg ctcaacgcaa
     2221 ccacgtgtgc accccgctcc gccatcagaa tcgcggtcgc gtaacctatg cccttgcccg
     2281 ctcccgtaac gaggacagtc ttgccggcaa attc
//
LOCUS       DATGBK010000494         3531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_191515, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000494 DATGBK010000000
VERSION     DATGBK010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191515"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1566
                     /locus_tag="VKJ77_07110"
     CDS             <1..1566
                     /locus_tag="VKJ77_07110"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HMC45075.1"
                     /translation="DKTVVRDLNLSIGRGERVALVGESGSGKSVTALSILGLADNARQ
                     TGRILLDGDDLLQKTEQQMRGIRGRDVAMVFQEPMTALNPLFTIGKQIAESLRLHEGL
                     RPNAARQRGIELLRRTGIPEPERRIDSFPHQLSGGQRQRAMIAMALACRPRLLLADEP
                     TTALDVTVRQQIVELLIGLQEQEAAERGMAVLLITHDLNLVKRFAQRVAVMEKGVLVE
                     TNTTAELFANPQHPYTRRLLNSQPERAIDPIASNARQLLEVQGLSVDYRTSGKGWRST
                     FSKSSFRALQDVGITLRRGETLGIVGESGSGKSTLAAAILGLQRPTEGMIHIDGQSLS
                     TLKSANSRRSVSSRLQVVFQDPYGSLSPRMTIEQIVGEGIALHRPEVDSAARRQRVVA
                     LLDEVGMPADVLPRYPHEFSGGQRQRIAIARALAVEPELLVLDEPTSALDVSIQQQVL
                     NLLTRLQKKYTLSYLFITHDLAVMRAMAHRVAVMKAGRIVEMGDTMDVLQAPGHPYTQ
                     ALLAASIVAGAAA"
     gene            1894..2700
                     /locus_tag="VKJ77_07115"
     CDS             1894..2700
                     /locus_tag="VKJ77_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007734130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC45076.1"
                     /translation="MMTQPGDHLCQRVRKGLRAGEFQLAFQGVYHAGTGALSSAEALI
                     RWMHPKNGMLLPSAFIGTIADPAVASEMTHFVIDSTCSQLGSWQREGHSMFPIAVNVP
                     PSLVAKASFAQRLEHCARSHGVVPGLLQVELSEAEDATKILASKGLMDELREIGVRIA
                     IDDFGTGYSSLAMLSALDVDVVKLAKELLVPVPDNLRACEVASAILNLLEKLAMTVVV
                     EGVETAAQAQWLARWPNVLAQGFYYARPMFGLSNIPECKRAPVKHLQLVG"
     gene            3275..>3531
                     /locus_tag="VKJ77_07120"
     CDS             3275..>3531
                     /locus_tag="VKJ77_07120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC45077.1"
                     /translation="MMNRDNPVWLITGCSTGFGRELAKLVLERGWRAVVTARDPSKLA
                     DLAEGHKDRALVLQLDVTDRKQIADVVAKSQKHFGRIDALV"
BASE COUNT          724 a         1011 c         1115 g          681 t
ORIGIN      
        1 gacaagaccg tcgtacggga cctgaatctt tctatcgggc gtggtgagcg cgtggcgctg
       61 gtgggcgaat cgggatctgg caagagcgtc actgcgcttt ccatcctggg tctcgcggac
      121 aacgctcgcc agaccgggcg catcctgctg gacggcgacg atctcctgca aaagaccgaa
      181 caacagatgc gcggcattcg cggtcgcgac gtcgccatgg tcttccagga accgatgacc
      241 gcgctcaacc cgctattcac catcggcaag cagatcgcgg aaagcctgcg tctgcacgaa
      301 ggtttgcggc ccaacgcggc gcgccagcgc ggtattgagt tattgcggcg taccggtatc
      361 cccgaaccgg aacggcgtat cgacagcttc ccgcatcagc tctccggtgg ccagcggcaa
      421 cgcgcgatga tcgcgatggc gctcgcgtgc cggccacgcc tgctgctcgc cgatgaaccg
      481 accacggccc tcgatgtgac cgtgcgccag caaatagtgg aactgctgat cggcttgcag
      541 gaacaggagg cggccgagcg cggcatggcg gtgctgctga tcacacacga cctgaacctt
      601 gtcaagcgct ttgcgcagcg cgtggcggtg atggaaaagg gcgtgctggt ggaaaccaac
      661 acgaccgcgg aactgtttgc gaatccgcag cacccctaca cgcgccgcct gctcaacagc
      721 cagcccgaac gcgcgatcga tccgatcgct tcgaacgcgc ggcagctgct cgaagtgcag
      781 gggctctcgg tggactaccg gacgtcgggg aagggctggc ggtctacgtt ttcgaagtct
      841 tcgttccgcg ctttgcagga cgtcggcatc acattgagac gcggcgaaac gctcggcata
      901 gtgggcgaat ccggatcagg aaagtccacg cttgccgctg ccatcctggg cctgcagcgg
      961 ccgacggaag ggatgatcca tatcgacggg cagtccttgt ccacgctcaa gagcgcgaac
     1021 tcgcggcgca gtgtatcgtc gcggctgcaa gtggtatttc aggatcccta cggatcattg
     1081 tcgccgcgca tgacgatcga gcagatcgtg ggcgaaggga ttgcattgca tcggccggag
     1141 gtggactcgg cggcgcgtcg tcaacgcgtg gtggcgctgc tcgacgaagt cggtatgccg
     1201 gctgatgtcc tgccgcgtta tccgcatgaa ttttccggtg gccagcggca gcgcatagcg
     1261 attgcccggg cgctcgcggt cgagccggaa ctgctggtac tcgatgaacc cacgagcgcg
     1321 ctcgatgtat cgatacagca gcaggtgctt aacctcctca cccgcctgca gaaaaaatat
     1381 acgctgagtt acctgttcat tacgcatgac cttgccgtga tgcgcgcgat ggcgcacaga
     1441 gtggcggtca tgaaagcagg gcgcattgtg gagatgggcg acacgatgga cgtgttgcaa
     1501 gcgccggggc atccctatac gcaggcgctg ctagcggcat caatcgtagc gggcgcggcg
     1561 gcgtgaaatg gcgaggcggc ggcaacagct tgtcgctgct aactcaggac acgaagtgcg
     1621 gacacatccg gcgtaacagt cctcagtcgt tacgtaacac acggcccgcg ttattttcat
     1681 ggcgctcggc cgatacgcgc caagccctcg gcaagcaggc ctttactgga cctggcatgg
     1741 gcctgacccg cgccaggccg ggcgtttggt caattggcac ggctcgtgca taaagcagtc
     1801 cggttcatga agcatgacgt catcatgcga tccatgaact gggcgccggc caaccggtgg
     1861 cgccgtacac cccgggagcg gacggatgtg acgatgatga cccaacctgg cgaccaccta
     1921 tgtcagcggg tgcgcaaggg cttgcgtgcc ggcgaatttc aacttgcgtt tcagggcgta
     1981 taccacgcag ggacgggcgc tttgtcgagt gccgaggcgt tgattcgctg gatgcatccg
     2041 aaaaatggaa tgctattgcc gagcgcgttc atcggcacaa ttgccgatcc ggccgtggcg
     2101 tccgagatga cgcattttgt tatcgacagc acgtgttctc aacttgggtc atggcagcgc
     2161 gaagggcatt cgatgtttcc catcgcggtc aacgtgccgc cgtcgttggt tgccaaggcg
     2221 agctttgcgc agcgactgga acattgcgcg cgctcgcacg gtgttgtgcc gggactgctc
     2281 caggtggagt tatccgaggc tgaagatgcc acgaaaatcc tggcttcgaa gggattgatg
     2341 gacgagttgc gcgagattgg tgtgcgtata gccatcgacg atttcggcac cggatattca
     2401 tcgcttgcca tgctgagcgc cctcgacgtg gacgtggtca aactcgcgaa ggaattgctg
     2461 gtgccggtgc cggacaatct gcgcgcgtgc gaggtggcgt ccgcgatact caatctgctg
     2521 gaaaaactgg cgatgacggt ggtcgtagag ggcgtggaga cggcggcgca ggcgcagtgg
     2581 ctggcgcgct ggccaaacgt attggcgcaa ggtttctatt acgctcggcc gatgttcggg
     2641 ctgtcgaata ttcccgagtg caaacgtgcg ccggtaaagc acctgcaact cgtaggctga
     2701 tggaaccggg atttagaaaa acaatcagcc ggtgaccgta tccggcaaac gtattagcat
     2761 ttagatgggc cggtatagcg gttccaaccg aaatttgaat gccgtgatat taccgatgcc
     2821 tttcgagccg aagaactgca cctctggagg gtgccagtta attttgtctt agcagaaaaa
     2881 cagggtatta ggcacaaatg aaatgactca gagacgactt tgagtgcatt ggttccgcgt
     2941 ggattttcgc gcgtcagtaa agccgaaata caggcccgtc ctgaacaaaa actaataaaa
     3001 ctaaaatcaa attcgacctt ggtcggcctc gacacccggc tataaccaag gctgaagctg
     3061 cttgccgcca gcagaatcag gcaagcgaaa gcaacgaccc caagcgcgcc aacccggccg
     3121 ggttgtgctg cgttcgccta tcgcgagtaa gctttagcgg gaatttccgc gcgggtatgg
     3181 ttctggcgac gcacctcacg cttcggcccg aacgccccct tcattccgat gcaccaatac
     3241 aaccgacttt gcgatctata aacaggagct ttccatgatg aatcgagaca accccgtgtg
     3301 gctcatcacc ggctgctcga ctggcttcgg ccgtgagctg gcgaaacttg tgctggagcg
     3361 cggatggcgc gccgtagtca cggcacggga cccgtccaag cttgccgatc tggccgaagg
     3421 tcacaaggac cgtgcgctgg tgctgcaact cgacgtgacc gaccgcaagc agatcgccga
     3481 tgttgtcgcg aagtcgcaga agcatttcgg ccgtatcgat gcgctcgtga a
//
LOCUS       DATGBK010000495         4249 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_306919, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000495 DATGBK010000000
VERSION     DATGBK010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4249
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306919"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..2305)
                     /locus_tag="VKJ77_07125"
     CDS             complement(44..2305)
                     /locus_tag="VKJ77_07125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC45078.1"
                     /translation="MTPQREEPGADQWQDEPPFPVVPERNFAAQRLTLRVLLIAAIVL
                     PCLYVAAMSWSDLKGREADAAEMVDRNAHVAQEHALKVFDMNETLNARVIDLIDGVDD
                     DTLRREELAVHNKLVAMGGGYPQVASVSIIGADGRLVATSRIFPSPDVSIATRDDFVG
                     IRDNKMFENVSRVMLGKVAGESVFNTAVARKTPDGRFDGIVTIALRPGYFGAFYRELL
                     GEHSTVSLGLTRADGAVLAWYPTRPPDRMDLAASSPLREAYASGERSGVVRMRSGLDN
                     EMKIVAYRKVGNYPVYVSSGYPLSTIWDAWYRHVSVLMLSLFAPCVVLWGVIWLSLRR
                     LANEEDAWERWQAEASMRRSIESAYRQARKMEALGNLVGSVAHDFNNLLMILSANVQI
                     VRRRGATGLDRELSAMERALKSGQSLTRQLLGVARKQPLRNETIAIGKWLPACRELLK
                     ASLGAKVALNLETNSDVWPVRVDAAELELALINVAVNARDAMPSGGTFSVRADNVHFR
                     HEDGFPIIGEFVQLTLEDTGAGMGPDVLGRAFEPLFTTKSKGMGTGLGLPQVFAFCER
                     AGGVATIDSALGAGTSVRLYLPRASAVVAESPAANHDTAAAGESHGLRVLLVEDNEEV
                     AAGTEALLSMMNHHVTHIFNADGAIAALEAARLDVANGGALPFDVVLSDIHMPGKLNG
                     IDLAEILQSWTPRMPVILVTGYAEELDRARQVDARVLSKPFDIALLDSLLQAIREDLS
                     ARADNREHGEAPH"
     gene            2895..3740
                     /gene="hpnD"
                     /locus_tag="VKJ77_07130"
     CDS             2895..3740
                     /gene="hpnD"
                     /locus_tag="VKJ77_07130"
                     /EC_number="2.5.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016767 - geranylgeranyl-diphosphate
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0016117 - carotenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="presqualene diphosphate synthase HpnD"
                     /protein_id="HMC45079.1"
                     /translation="MAVSNLIADDPAPDVAKVTSGSSFYLAMRILPAAQRDAMYQVYA
                     FCRAVDDIADGTLPRGERAAALEQWRADIDDCYAGKPRRSLAALTQHIQSFHLSRDDF
                     IAVIDGMAMDAAEDIVAPDDATLDLYCDRVASAVGRLSVRIFGMHEDAGRRLAHHLGR
                     ALQLTNILRDIDEDAGIGRVYLPRELLSREGISTTDITSIVNDARLPRVCLTLADRAR
                     SHYAQSDAIMATAPRAQVRAPRIMSGAYRCVLEANLKRGFDLPRNHIRTPRSRLLWIV
                     ARHIF"
     gene            3740..>4249
                     /locus_tag="VKJ77_07135"
     CDS             3740..>4249
                     /locus_tag="VKJ77_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC45080.1"
                     /translation="MSRLVHVIGAGLSGLAAAVQLQRRGARVVLHEAAPHAGGRCRSY
                     FDIKLNATIDNGNHLVLSGNHATLSYAKAIGAADELVGPTQPEFPFMDLRSGARWTVK
                     LSPGRVPGWIFDSAARVPGTMPADYLSLAPLLFAKPGRTMQQTMRTNGRLWDALINPL
                     FLAVLNVDPR"
BASE COUNT          782 a         1345 c         1321 g          801 t
ORIGIN      
        1 cgagcggatg tttttacaaa ttatgtggaa aaagacgctc ggctcagtgc ggcgcttcgc
       61 catgttcgcg attgtcggcg cgtgcgctca agtcttcgcg aatagcttgc agaagcgaat
      121 cgagcagggc gatatcaaac ggtttggaca atacgcgcgc atcgacttga cgcgcccggt
      181 ccagttcttc cgcataaccc gtcaccagga tcaccggcat gcgcggcgtc cagctttgca
      241 ggatctcggc caggtcgatg ccgttcagtt tgcccggcat gtggatatcg gagagcacga
      301 cgtcgaacgg cagcgcaccg ccattggcga cgtcgagacg ggccgcctcc agcgcggcga
      361 tcgcgccgtc cgcgttgaag atatgcgtga cgtggtgatt catcatcgac aacaacgctt
      421 cggtgcccgc agcaacttct tcgttatctt ccaccagcag cacgcgcagc ccgtgcgatt
      481 cgccggccgc ggccgtgtcg tgatttgcgg caggggattc cgccacgaca gcgctcgcgc
      541 gcggcagata gagcctgacc gacgtgcctg cgccgagcgc gctgtcgatg gttgccacgc
      601 cgcccgcccg ctcgcagaac gcgaacactt gcggcaggcc cagcccggta cccatgcctt
      661 tggacttggt ggtgaacaac ggttcgaacg cgcggccgag tacgtcgggg cccatgcccg
      721 cgcccgtgtc ctccagcgtc aactgcacga attcgccgat gatcggaaac ccgtcctcgt
      781 ggcgaaagtg cacgttgtct gcgcggacgg agaaggtgcc accgctcggc atggcgtcgc
      841 gggcgttcac cgccacgttg atcagtgcaa gctcgagctc ggcggcatcg acgcgaacgg
      901 gccacacgtc gctattcgtt tcgagattca gcgcgacctt cgcgcccagc gaggccttca
      961 acagttcgcg gcaagccggc agccacttgc cgatggcgat cgtctcgttg cgcagcggct
     1021 gcttgcgggc gacgcccagc aactggcgcg tcagcgactg gccgctttta agcgcacgtt
     1081 ccatggccga caactcgcga tccagtccgg tagcgccgcg tcgccggaca atctggacgt
     1141 ttgccgacag gatcatcagc aggttgttga aatcatgtgc gacgctgccg accagattgc
     1201 ccagcgcctc catcttgcgc gcctgccggt aagcagattc gatcgaacgg cgcatggacg
     1261 cttcagcctg ccagcgctcc caggcatctt cttcattggc gaggcggcgc agcgacaacc
     1321 agatcacgcc ccacaacacc acgcacggcg cgaacaagga cagcatcagc acgctgacat
     1381 gccgatacca cgcatcccag atggtcgaga ggggatatcc actggataca tacaccggat
     1441 aatttcccac cttgcgatac gccacgatct tcatttcatt gtcgagccct gagcgcatgc
     1501 gcaccacgcc gctccgctcg cccgacgcat acgcttcgcg caacggcgaa ctggcggcaa
     1561 gatccatgcg gtcgggcggc cgcgtgggat accaggcgag cacggcgccg tccgcgcgcg
     1621 tgaggccgag cgacacggtg gagtgttcgc ccaacaactc gcgatagaac gcgccaaagt
     1681 aacctggacg aagcgcgatg gtcacaatgc cgtcaaagcg gccatcgggg gtcttgcgcg
     1741 ccacggccgt gttgaacacg gactctcccg ccaccttgcc gagcatcacg cgggagacgt
     1801 tttcaaacat cttgttgtcg cgaatgccga cgaagtcgtc gcgggtggca atcgatacat
     1861 ccggcgaagg gaaaatgcgg ctcgtggcaa ccaggcgccc atccgcgcca ataatgctca
     1921 ccgacgccac ttgcggataa ccgccgccca ttgccacgag tttgttgtga acggcgagtt
     1981 cttcgcggcg cagggtgtcg tcgtccacgc cgtcgatcag gtcgatcacg cgggcgttga
     2041 gcgtctcgtt catgtcgaag actttcagcg catgttcttg ggcgacgtgt gcattgcggt
     2101 caaccatctc ggcggcatcg gcttcgcgcc ctttcaggtc actccacgac atggccgcca
     2161 catacaggca gggcaagaca atggcggcga tcagcaggac ccggagggtc aaacgctggg
     2221 cggcaaagtt acgctccggc accacgggaa aaggcggctc gtcttgccat tggtcagcgc
     2281 ccggttcctc gcgttgcggc gtcatggtga gtcgttcgtc ccgatgtgaa tggctgagcg
     2341 cggcgtcttt aggcaacgat gaaggcagcg atgaaggcag cgaatgcgac acgcggaatt
     2401 ccgcgcattg tggccgcctg tttgtttgcc gccagcgctc gggaaagaga gtgcgtgcat
     2461 aaatcgtgcc tttcaaccga tgaatcgatg ttctgccaaa cacacggcat cgacgtttaa
     2521 agcgcaggga tcgaggagag gcgacgcttc gcgagggtga gggcgggtgg taaaaagcgg
     2581 cggaccgggt aaagttggcg aggaatattg cgttggtaac gaggggatat aggctgacgg
     2641 ccgatgtttc gtacgaaggt tgaggccggc ggaggccagg tagcaagcgt gttgaaagca
     2701 cgcagcaggc cacctcaggg caacacttca caaacttgat atacttttcg ccgcttccgg
     2761 tacggcttgc acgccgcctg aagccggttc gcgccaggct tgcattcagc tttaaagcat
     2821 gttccatgaa gccggatgcc cggcgcccga tctaaacact tactgccctt gggggcgcca
     2881 cagcggagtc cgtcttggcc gtttccaatc ttatcgccga cgatcctgca cccgacgttg
     2941 ccaaggtaac gtcgggtagc tcgttctatc tcgccatgcg catcctgccg gctgcgcagc
     3001 gcgacgccat gtatcaggtc tacgcgttct gccgcgcggt tgacgatatt gccgacggca
     3061 cgctgccgcg cggtgaacgt gccgccgcgc tcgaacaatg gcgtgcggac atagacgatt
     3121 gctacgccgg caagccgcgc aggtcgctcg ccgcgttgac gcaacatatc cagagctttc
     3181 acctgtcgcg cgatgacttc atcgccgtga tcgacggcat ggcgatggac gccgccgaag
     3241 acatcgttgc gcccgacgac gccacgctcg acctgtattg cgaccgcgtg gcgagcgcag
     3301 tcgggcggtt atcggtgagg atattcggga tgcacgaaga tgccggacgg cgtcttgcgc
     3361 accacctcgg ccgtgcgctg caactcacga acattcttcg cgacatcgat gaagacgccg
     3421 gtattggacg ggtttatctg ccgcgtgaac tgctctcccg cgaaggtatt tccacgaccg
     3481 acatcacgtc catcgtcaac gatgcccgct tgccgcgcgt ctgcctgacg cttgccgatc
     3541 gcgcgcggtc ccactacgcg caatccgatg cgatcatggc caccgcgccg cgtgctcagg
     3601 tgcgggcgcc gcgcatcatg tcgggtgcgt atcggtgcgt gcttgaagcg aatttgaagc
     3661 gcggcttcga tctcccacgc aaccacatcc gcacgccgcg ttcgcggctg ctgtggatcg
     3721 tcgcgcgaca tattttctga tgtcgcgtct tgttcatgtg atcggcgcgg ggttgtcggg
     3781 actcgccgcc gcggtccagt tgcagcgccg tggcgcgcgt gtggtcttgc acgaagccgc
     3841 accgcacgcg ggcggccgct gtcgttctta cttcgatatc aagctcaacg ccacgataga
     3901 taacggcaac catctggtgc tgtcgggcaa ccacgcgacg ctgagctatg ccaaggcgat
     3961 tggcgctgct gacgaacttg tcggcccgac ccagcccgag tttccgttca tggatttgcg
     4021 cagcggcgcg cgctggacgg tgaagctttc gccgggccgc gtgccgggct ggatcttcga
     4081 ttccgccgcg cgtgtcccgg gcaccatgcc cgcggactat ttgtcgcttg cgccgctgtt
     4141 gttcgccaaa cccggccgca cgatgcagca aaccatgcgc acgaacgggc gcttgtggga
     4201 cgcgctgatc aacccgctgt tcctggccgt gctgaatgtg gatcctcgt
//
LOCUS       DATGBK010000496         3023 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_260818, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000496 DATGBK010000000
VERSION     DATGBK010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260818"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..641
                     /gene="fliS"
                     /locus_tag="VKJ77_07140"
     CDS             228..641
                     /gene="fliS"
                     /locus_tag="VKJ77_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HMC45081.1"
                     /translation="MFSQAHGGANAYARVGVQTGVMGASPHRLVAMLYQGARQAIAQA
                     RMHMQQGNIPARGEAISKAISIIESGLQQSLNRDIGGDIAARLDALYTYMSHRLLEAN
                     VRQSEEVLVEIDGLLATLEEAWMAIAPDAAKMAAA"
     gene            666..998
                     /locus_tag="VKJ77_07145"
     CDS             666..998
                     /locus_tag="VKJ77_07145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliT"
                     /protein_id="HMC45082.1"
                     /translation="MKTTQEYFAHYEAIAALSACMLAAARSGEWGELKTMQSTYRELV
                     DGLREVDTSSELDDTARARKLELVRRILADDAAIRDLATPSLARLSAALFTVNRPARV
                     LKKMIGFR"
     gene            1076..2452
                     /locus_tag="VKJ77_07150"
     CDS             1076..2452
                     /locus_tag="VKJ77_07150"
                     /inference="COORDINATES: protein motif:HMM:NF014207.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HMC45083.1"
                     /translation="MTGLDSAVAALLASRTDMLLYALNTQTSSTAPQANTSQLLVDTP
                     RVATPAAVISAYATAGPSTQTALSEIARTLDIISRFGGSATPALLGSSPLWPTAPRLI
                     LAASAFESLSGSLFSSSSVNAASAVNPPAPPLPTPVLAAMLARTVVDSGLFYENHIAL
                     WLGGQRSLASLRNEPQARVDKLASELPSDSFPAAQETAPEAWIDETLLPPTFAAADTP
                     GAPNPMRPVPTPQTPQQAAALAASVREMPTSVFSSTAQGAGTAGTGALPSAAHLQDSA
                     VQAAIASGIHPSTIPLVRQQLDMLASDQFRWSGEAWPGAKFEWEIQPQNRAPYGRDPS
                     QDGSAGASSAATDRAWHTRVTLSLPTLGNVDADLVLTGQQLVVRLNASEGGAARLAAD
                     GDHFRQQLDAAGLQLAGLTVHARDALADLAADPAFPHFANVINVTDVASPAVPPPAST
                     SLSAGSDT"
     gene            2455..2790
                     /locus_tag="VKJ77_07155"
     CDS             2455..2790
                     /locus_tag="VKJ77_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EscU/YscU/HrcU family type III secretion system
                     export apparatus switch protein"
                     /protein_id="HMC45084.1"
                     /translation="MRNDSRKQATALTYDTKNADAAPRVVAKGYGLVAEMIVQRAKDA
                     GLYVHESPEMVSLLMQVDLDSRIPPALYQAVAELLAWLYRLENGVEVGPRPEVDPAIP
                     VRKGRSRAA"
BASE COUNT          563 a          955 c          969 g          536 t
ORIGIN      
        1 gtcagacaaa tagaagggtc ctaacccgtt tatcggcacc ggttcatcag ggttttcgtc
       61 actaggtagg ctggtgtgca gcgccttcgc gcgaacgccc atgaagcgac ggaaacatgc
      121 gaccagagta aggagctttg caccaactct ggtagatcgc ggacaacggc atgggaccag
      181 agtaaggcgc taaagcgcca actctggtcg acacaggaga gggtcggatg ttttcccagg
      241 cacacggtgg ggccaacgcc tatgcgcgcg tcggcgttca gacaggggta atgggcgcga
      301 gcccgcacag gctggtcgcc atgttgtatc agggcgcgcg gcaggcgatt gcccaggcgc
      361 ggatgcacat gcagcagggc aatatcccgg cacgcggcga ggcgatctcg aaagcgatca
      421 gcatcattga aagcggtttg cagcagtcgc tcaaccggga cattggcggc gacatcgcgg
      481 cccgtctcga tgcgctgtac acgtacatgt cgcaccgttt gctggaagcg aatgtgcgtc
      541 agagcgaaga agtgctggtg gagatcgatg gcctgctggc gaccctggag gaagcctgga
      601 tggcgattgc acccgatgca gcaaaaatgg ctgcggcgtg aagccgcgaa acatgcttgc
      661 acataatgaa aaccacacaa gaatatttcg ctcattatga agcgattgcc gcactttctg
      721 cgtgcatgct ggccgcagca cgcagtggag aatggggtga actgaagact atgcagagca
      781 cgtaccggga gttggtcgac ggcttgagag aagtcgatac cagttccgaa ctggacgaca
      841 ccgcgcgtgc ccgcaagctc gaactggtgc gccggattct tgccgacgac gctgccattc
      901 gtgatctcgc cacccccagc ctcgcgcgtt tgtccgcagc gttattcacc gtgaacaggc
      961 ccgcgcgagt tttgaaaaag atgatcgggt tccgctagac gcgattgacg cgtttgcggc
     1021 tcgttgaaac cggtggccgg ccgttcggct ggactgctga cccgaggata ttggcatgac
     1081 tggactggac tccgccgtcg ctgcgctgct tgccagccgc actgacatgc tgttgtacgc
     1141 gctcaatacg cagaccagtt cgaccgcgcc ccaagccaat acctcgcaac tgttagtcga
     1201 taccccgcgg gtcgccacgc ctgcggccgt tatcagtgca tatgccacgg cgggcccgtc
     1261 gacgcagacc gcgttgagcg agatcgcgcg cacgctcgac atcatttcgc ggttcggcgg
     1321 aagcgcgacg cccgccttgc tcggcagctc gccgctgtgg ccaaccgcgc cgcgcctgat
     1381 cctggccgcc agcgcgttcg agagcctgtc cggctcgttg ttttcctcca gctcggtgaa
     1441 tgccgcgagc gcggtcaacc cgcccgcacc gcctttgccc acgcccgtat tggcggcaat
     1501 gctggccagg accgtcgtgg acagcggcct tttctacgaa aaccatattg cgctctggct
     1561 aggcgggcag cgttcgcttg cgtcgctacg aaatgagccc caggcgcgcg tggacaaatt
     1621 ggcaagcgaa ttgccgtcgg attctttccc ggctgcgcag gaaactgcgc ctgaggcctg
     1681 gatcgacgaa acgctgctgc cgcccacttt cgccgccgcc gatacccccg gggcacccaa
     1741 tcccatgcgt cctgtgccga cgccgcaaac gccgcagcag gcggcggcgc ttgcggcatc
     1801 ggtgcgcgag atgcccacga gcgtgttttc atcgacggcg cagggggcgg ggacagcagg
     1861 aacgggcgcg ctgccttcgg ccgcgcatct gcaggattca gccgtgcagg cggcgattgc
     1921 gtccggcatt catccatcga ctattccgct ggtccgccag cagctcgaca tgctcgcctc
     1981 cgatcagttt cgctggtccg gcgaagcgtg gccgggcgcg aagttcgagt gggaaatcca
     2041 gccgcagaac cgcgctccct atgggcgtga tccgtctcag gatggcagcg cgggagcaag
     2101 ttcggccgct acggatcgcg cctggcacac gcgtgtcacg ctgagcttgc ctacgctcgg
     2161 caatgtggac gccgatctgg tgctcaccgg ccagcaactg gtggtgcggc tgaatgcgag
     2221 cgaaggcggt gccgcccgtc ttgccgccga tggcgatcat ttccggcaac aactcgacgc
     2281 cgcgggattg cagcttgccg gattgacggt gcacgcccgc gacgcgctgg ccgacctggc
     2341 cgctgatccg gcgttccctc atttcgccaa cgtcatcaat gtcaccgatg tcgctagccc
     2401 ggcggtgccg ccgccggcat caacatcgct atcggctggg agcgacacgt gagtctgcgc
     2461 aacgattcgc gcaagcaggc aaccgcgctc acctacgaca ccaaaaacgc cgacgccgcg
     2521 ccgcgcgtgg tcgcgaaggg ctacgggctg gttgctgaaa tgatcgtgca gcgcgcaaag
     2581 gacgcggggc tgtacgtgca tgaatcgccg gagatggtgt cgctgctgat gcaggtcgac
     2641 ctcgactcgc gcatcccgcc ggcgctttat caggcggtag cagaactgct cgcgtggttg
     2701 tatcggctgg agaacggggt ggaagtaggg ccgcgccccg aagtcgaccc cgcaattcca
     2761 gtgcgcaagg ggcgcagccg cgcggcttga ggcatcgggc gttgtgtttc gcgctacccc
     2821 gaaaccaccc cgcgctgtcc tcaaacaaat taccccgcga acgcgcgctc agcgggcgat
     2881 gcctttgcgc gctaccccgc gaacgcacgc tcgatcactg cgttgaaatc gaacgtggct
     2941 ggcagcgttc catatacgcg attgattgaa ccacgggcat cgccgagacg ggtttcgatg
     3001 aacgccgccg ccacgtccgc agg
//
LOCUS       DATGBK010000497         2470 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_121759, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000497 DATGBK010000000
VERSION     DATGBK010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121759"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..623
                     /locus_tag="VKJ77_07160"
     CDS             <1..623
                     /locus_tag="VKJ77_07160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HMC45085.1"
                     /translation="APDYELFIECLRTASRDHHLAIHAYALMPGAVHLLVTPRDEASL
                     PKAMQAVGRRYVAHFNRRYARRGTLWEGRYRATVIEGETYFLLASRVVEMAPVHADLA
                     ALPQDYKWSSYRHHIGLTLDSLITDHPLYWKLGNTPFERQRAYTELCEQPLDEREANR
                     LLQATLKGWVLGSDSYREWAGRAANRRVSPLPRGRPRKIRETPQTR"
     gene            972..>2470
                     /locus_tag="VKJ77_07165"
     CDS             972..>2470
                     /locus_tag="VKJ77_07165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006416612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit alpha"
                     /protein_id="HMC45086.1"
                     /translation="MNDQLPPTLGSAPAAQGMYDPENEHDSCGVGFVAHIKGKKRHEI
                     IQQGLKILENLDHRGAVGADKLMGDGAGILIQIPDGFYREEMAKQGVTLPPEGEYGVG
                     MIFLPKENASRLACEQELERTVKAEGQIVLGWRDVPVDASMPISPTVKASEPLIRQIF
                     IGRGKDIVVTDALERKLYVIRKTASHRIQALKLKHGKEYFVPSMSARTVVYKGLLLAG
                     QVGVYYRDLQDERTVSALALVHQRFSTNTFPAWELAHPYRMIAHNGEINTVKGNVNWL
                     NARTGAIASYVLGDDLPKLWPLIYPGQSDTASFDNCLELLVMAGYPLVHAMMMMIPEA
                     WEQHTLMDDNRRAFYEYHAAMMEPWDGPAAIAFTDGRQIGATLDRNGLRPARYVITDD
                     DLVILASESGVLPVPESKIVKKWRLQPGKMFLIDMEQGRIIDDKELKDNLANGKPYKS
                     WIDAVRIKLDEIEPKAEEVDTQRREAAALLDRQQAFGYTQEDVKFLMAP"
BASE COUNT          513 a          766 c          737 g          454 t
ORIGIN      
        1 aagctccgga ctacgagctt ttcatcgaat gcctgcgcac ggcctcccgc gaccaccatc
       61 tcgccatcca cgcttacgcg ctgatgccag gcgcggtgca tctgctcgtc actccccgcg
      121 acgaagccag cctcccgaaa gccatgcagg cggtcggccg gcgctatgtc gcgcatttca
      181 atcgccgcta tgcccgccgc ggtaccttgt gggagggccg ctaccgggca acggtgatcg
      241 aaggtgaaac ctacttcctg ctcgcgagcc gggtagtcga gatggcgccg gtacatgccg
      301 acctcgcggc cctcccgcaa gactacaaat ggtccagcta ccgccatcac atcggcttga
      361 cgctcgacag cctcatcacc gaccacccgc tgtactggaa gctcggcaat acaccgttcg
      421 aacgtcagcg cgcctataca gagctgtgcg agcagccgct cgacgaacgc gaagccaacc
      481 ggctgcttca ggcgacgctc aagggctggg tcctcggcag tgactcctac agggagtggg
      541 cagggcgtgc cgctaaccgt cgcgtctcac cgttgcctcg cggccgtccc cgcaagattc
      601 gcgagactcc tcagacccgt taacggagtt ttcgcgtcgg aactgaagaa tgactgaacg
      661 gcatgacgac aaataatcgg catgccgttt atttttatcg aatttgatat ggaactaatt
      721 aaatggggca aacatgcacc aactcgataa taggtgtcag atcagcgcgt tttggttgcc
      781 aactttttga ttcatcgcgt atatttcgtt ttccggctgt tcaggacgca tcgcgtctgt
      841 ttgcacgacc ggcttcgcgt ttgtcgccca ggttcagggt cttggcctgc cggtggcgcg
      901 agcaatacac ataagcagcg caaaaacatg ttcaacggcc gcccgcggcc ccccacagaa
      961 cacggtgacc catgaacgat caactgccgc cgactctcgg ttccgctccc gccgcgcagg
     1021 gcatgtatga ccccgagaac gaacacgact cctgtggcgt cggcttcgtt gcgcacatca
     1081 agggcaagaa gcgccacgaa atcatccagc agggtctgaa gatcctcgaa aacctcgacc
     1141 atcgcggcgc tgtcggtgcc gacaagctga tgggcgacgg cgcgggcatc ctgatccaga
     1201 ttccggacgg gttttatcgt gaggaaatgg cgaagcaggg cgtgacgctg ccgccggaag
     1261 gcgagtacgg cgtcggcatg atctttctgc cgaaggagaa cgcgtcgcgt ctcgcgtgcg
     1321 agcaggaact ggaacgtacg gtgaaagccg aaggccagat cgtgctcggc tggcgcgatg
     1381 tgcccgtcga tgcatccatg cccatttcgc cgaccgtgaa ggccagcgag ccgctgatcc
     1441 ggcagatctt tattggccgg ggcaaagaca ttgtcgtgac cgatgcgctc gaacggaagc
     1501 tgtacgtgat ccgcaagacc gctagtcatc ggatccaggc gctcaagctc aagcacggca
     1561 aggagtactt cgtgccgtcg atgtcggcgc gtacggtcgt ctataagggc ctgctgctgg
     1621 ccggtcaggt tggcgtgtat taccgcgacc tgcaggacga acgtaccgtc tccgccctcg
     1681 cgctcgtgca ccagcgcttc tccacgaaca cgtttcccgc gtgggaactc gcgcacccgt
     1741 accggatgat tgcgcacaac ggtgaaatca acaccgtaaa gggcaatgtc aactggctga
     1801 acgcgcgtac cggcgcgatc gccagctacg tgctgggtga cgacttgccg aaactctggc
     1861 cgctgattta tccgggccag tcggacacgg catcgttcga taactgcctt gaactcctgg
     1921 tcatggcggg ttacccgctc gtccacgcga tgatgatgat gattcccgaa gcctgggaac
     1981 agcacacgct gatggacgac aaccgccgcg cgttctacga atatcacgct gccatgatgg
     2041 agccgtggga cggccccgcc gcgatcgcgt tcacggacgg ccgccagatt ggcgccacgc
     2101 tcgaccgtaa cggcctgcgt ccggcgcgct acgtcatcac cgacgacgac ctcgtgatcc
     2161 tcgcatcgga atcgggcgtg ttgccggtgc cggaatcgaa gatcgtgaag aagtggcgtc
     2221 tgcagccggg caagatgttc ctgatcgaca tggagcaagg ccggatcatc gacgacaagg
     2281 aactcaagga caacctcgcg aacggcaagc cgtacaagag ctggatcgac gccgtgcgca
     2341 tcaagctcga cgagatcgag ccgaaggcgg aagaggtcga cacgcagcgt cgtgaagcag
     2401 cagctttgct ggatcgtcag caggcgttcg gctatacgca ggaagacgtc aagttcctga
     2461 tggcgccgat
//
LOCUS       DATGBK010000498         2438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_98437, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000498 DATGBK010000000
VERSION     DATGBK010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98437"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1434
                     /gene="nirB"
                     /locus_tag="VKJ77_07170"
     CDS             <1..1434
                     /gene="nirB"
                     /locus_tag="VKJ77_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008942 - nitrite reductase [NAD(P)H]
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0042128 - nitrate assimilation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase large subunit NirB"
                     /protein_id="HMC45087.1"
                     /translation="GDATEYGTLLQMMLNRIELPEAPEFLILPSSDGKQKPGLGVEAL
                     PEAAQICSCNNVSKGQICAAVCAGATSIGELKSATKAGSSCGGCVALVTQVMKAEMKK
                     QGLAVNNHICEHFAYSRQELYHMVRVERIETFGALLAKHGHGLGCDICKPAAAAILAS
                     CWNEFVLKKEHASLQDSNDYYLANIQRDGTYSVVPRMPGGEVTPDGLIAVGQVAKKYG
                     LYTKVTGGARVDLFGARVEQLPLIWEELIAAGFESGHAYGKSVRTVKSCVGSTWCRYG
                     VGDSVGLAIGIENRYKGLRTPHKIKFGVSGCTRECAEAQGKDIGVIATEKGWNLYVCG
                     NGGMKPRHAELLASDLDRATLIRYIDRFLMFYIRTADRLQRTSVWRDNLEGGLEYLID
                     VVVHDKLQLAAELEAEMQHVVDTYECEWKKAVNDPDTRKRFRHFVNSDAADANVSFIE
                     ERGQVRPATPAERQLKRIDIPVVVETV"
     gene            1475..1822
                     /gene="nirD"
                     /locus_tag="VKJ77_07175"
     CDS             1475..1822
                     /gene="nirD"
                     /locus_tag="VKJ77_07175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008942 - nitrite reductase [NAD(P)H]
                     activity [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HMC45088.1"
                     /translation="MNNDRIPSSWVAVCPLDDIVPNTGVCALVNGEQIAVFHLHDGNP
                     SVFAIDNFDPGSHASVLSRGLIGNLGERIVVASPIFKHHYDLRTGECLEIPGNSVNAF
                     AARVEDGHVWVAV"
     gene            1851..>2438
                     /locus_tag="VKJ77_07180"
     CDS             1851..>2438
                     /locus_tag="VKJ77_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HMC45089.1"
                     /translation="MISGSVKTVCPYCGVGCGMVLQVEKGQVVKVSGDKEHPANFGRL
                     CTKGSSAHVVLRKSGRLECAFIRRERDQDPIPLPMAQAISDTAQRLRGLLDEHGPDAL
                     SFYVSGQMSIEAQYLVNKLAKGFVGTNNIESNSRLCMASAGSGYKLSLGADGPPGSYE
                     DIDRANLFFVIGANMADCHPILFLRMMDRVKAGAKL"
BASE COUNT          480 a          723 c          776 g          459 t
ORIGIN      
        1 ggcgacgcaa ccgaatacgg cacgcttttg cagatgatgc tcaaccgcat cgagttgcct
       61 gaggccccgg aattcctgat tctcccttcc tccgatggca agcaaaagcc cggcctcggc
      121 gtcgaggcgc tgcccgaagc cgcgcaaatc tgttcgtgca acaacgtatc gaaaggccag
      181 atttgcgcag cggtgtgcgc gggtgcaacc agcattggcg aactgaagtc cgcgaccaag
      241 gccggcagtt cgtgcggcgg ttgcgtggcg ctggtcacgc aggtgatgaa ggccgagatg
      301 aagaagcaag ggctcgcggt caacaaccac atttgcgagc actttgcgta ctcgcgccag
      361 gagctctatc acatggtgcg cgtcgagcgc atcgagacgt ttggtgcatt gctcgcgaag
      421 catggccacg gccttggctg cgatatctgc aagccagccg ccgccgcgat tcttgcctcg
      481 tgctggaacg agttcgtgct gaagaaagag cacgcaagcc tgcaggattc gaacgattac
      541 tacctcgcca acatccagcg cgacggcacc tattccgtcg tcccccggat gccgggtggc
      601 gaggtcacgc ccgacggcct gatcgccgtc ggccaggttg ccaaaaagta tggcctgtac
      661 accaaggtca cgggcggggc acgtgtcgac ttgttcggtg cgcgggttga acagttgccg
      721 ctgatctggg aggagctgat cgcggccggc ttcgagtccg ggcatgcgta cggcaagtcg
      781 gtgcgcaccg tgaagtcttg cgtgggttcg acatggtgcc gctatggcgt gggcgattcg
      841 gtcggtctcg cgatcggcat agagaaccgc tacaagggtt tgcgcacgcc gcacaagatc
      901 aagttcggcg tctccggttg cacgcgcgaa tgtgccgagg cacaaggcaa ggacattggt
      961 gtgattgcga cggagaaggg ctggaacctc tacgtctgcg gcaacggcgg catgaaaccg
     1021 cgccacgccg agctgctcgc atccgatctc gaccgtgcca cgctgatccg gtacatcgac
     1081 cgcttcctga tgttctacat ccgcaccgct gaccgcttgc agcgcacgag cgtgtggcgc
     1141 gacaacctgg aaggcgggct cgagtacctg atcgacgtcg tggtgcacga caagcttcag
     1201 cttgccgcgg aactcgaagc ggagatgcag cacgtggtcg acacctacga atgcgagtgg
     1261 aaaaaggcgg tcaacgatcc ggacacgcgc aagcgcttcc gccatttcgt caacagcgat
     1321 gcagccgatg cgaacgtgag tttcatcgaa gagcgtggcc aggttcgccc cgcgacgccg
     1381 gctgaacggc agctgaagcg aatcgatatt cccgtggttg tagagacggt ttgaactccg
     1441 tgcgattcac aagactcaca ctaaggacat catcatgaac aacgatcgaa tcccaagctc
     1501 atgggtggct gtgtgcccgc tcgacgacat cgtgccgaac actggcgtct gtgcgctcgt
     1561 caacggcgag caaatcgccg tgttccatct ccacgatggc aaccccagcg tgttcgcgat
     1621 cgataacttc gacccgggct cacacgcgtc ggtattgtcg cgcggactga tcggcaatct
     1681 gggcgaacgc attgtggtgg cgtcgccgat cttcaagcat cactacgacc ttcgcacggg
     1741 cgaatgcctc gagatcccgg ggaactcggt caacgccttt gccgcgcgcg tggaggacgg
     1801 ccacgtgtgg gtcgcggtat gactaagcta agcgggttcg agcgtcgctc atgatctccg
     1861 gcagcgtaaa aaccgtgtgc ccctactgcg gcgttggctg cggcatggtc ctgcaagtcg
     1921 agaaggggca agtggtcaag gtgtccggcg acaaggaaca cccggccaac tttgggcgcc
     1981 tctgcaccaa gggttcgtcg gcgcatgtgg tcttgcgcaa atcgggccgt ctggaatgcg
     2041 cgttcattcg ccgtgagcgg gatcaggacc cgatcccgtt acccatggcg caagcgattt
     2101 ccgacaccgc tcagcgcctg cgcggactgc tggacgagca cggcccggac gcgctttcgt
     2161 tctatgtgtc ggggcagatg tcgatcgagg cgcagtacct cgtcaacaag cttgcgaagg
     2221 ggtttgtcgg caccaataac atagagtcca attcgcggct ctgcatggcg agtgccggca
     2281 gcggctacaa actgtcgctt ggcgctgacg ggccaccggg ttcgtatgag gacattgacc
     2341 gagccaacct gtttttcgtg atcggcgcga acatggccga ctgccacccg atcctgttcc
     2401 tgcgcatgat ggatcgcgtg aaggccggtg cgaagctg
//
LOCUS       DATGBK010000499         1992 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_329924, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000499 DATGBK010000000
VERSION     DATGBK010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329924"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1457
                     /locus_tag="VKJ77_07185"
     CDS             <1..1457
                     /locus_tag="VKJ77_07185"
                     /EC_number="2.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016744 - transketolase or transaldolase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HMC45090.1"
                     /translation="TDLAYSDDVETRFKGYHWNTLHVDDANDGAALEAALKQAKANTD
                     GPTLIVVRSIIGWGAPHKQDTSAAHGEPLGVDEIKLAKKFYGWPEDSSFLVPDGVYKH
                     FNEGIGARGKAARVAWQKSFDDYAKKYPDLAKEFAQIEAHELPEGWDADIPTFDADAK
                     GMASRESSGKVLNAIAKRFPWMIGGSADLSPSTKTDMKFEGAGSFEQDNYAGRNLHFG
                     IREHVMGAICNGIALSNLRPYGSTFLIFSDYMKPPIRLSSIMEVPVIYVFTHDSIGVG
                     EDGPTHQPIEQLVSLRGVPGLSTYRPGDANEVAESWRAALAEPQRPACIVVSRQPMAT
                     FDRTKYASAKGVHKGAYVLADAEGGKKPEVILMATGTEVSVCVDTYEKLKSEGIAARV
                     VSMPSWDLFERQDDAYKESVFPPDVDARVCVEQAGALGWDRYVGRLGSQIVMHTFGAS
                     APLSDLKKKFGFTPEHVYDEAKKQIERVKTSHKE"
     gene            1464..>1992
                     /locus_tag="VKJ77_07190"
     CDS             1464..>1992
                     /locus_tag="VKJ77_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HMC45091.1"
                     /translation="MQIGIVGLGRMGANIARRLMRGEQTCVVYDHAPEATQAVVADGA
                     TGASDLGDLVQKLAAPRSVWLMLPAGKITEDTLNDLYEILEAGDTIIDGGNSFYKDDI
                     VHAAKLKEKGIHFVDVGTSGGVWGLERGYCMMIGGEKDVVLRHDPILSVLAPGRGDIP
                     ATPNREGRDTRVENGY"
BASE COUNT          421 a          561 c          661 g          349 t
ORIGIN      
        1 atacggatct cgcgtacagc gacgacgtgg aaacgcgttt caagggctac cactggaaca
       61 cgctgcacgt tgacgacgcc aacgatggcg ccgcgctcga agccgcgctg aaacaggcga
      121 aggccaacac cgacggtcct acgctgatcg tggtgaggag cattatcggc tggggtgcgc
      181 cgcataagca ggacacctcc gccgcgcatg gcgagccgct gggcgtagat gaaatcaagc
      241 tcgcgaagaa gttctacggc tggccggagg actccagttt cctcgtgccg gacggcgtgt
      301 ataaacactt caacgagggc atcggcgcgc gaggcaaggc ggcccgcgtt gcgtggcaaa
      361 agagtttcga tgactacgcg aagaagtatc cggatctggc gaaagagttt gcgcagattg
      421 aagcgcacga gttgccggag ggttgggacg cggacatccc cacgttcgac gccgacgcta
      481 agggcatggc gtcgcgggaa tcgtcgggca aggtgttgaa cgccattgcg aaacgtttcc
      541 cttggatgat cggcggttcg gcggatttgt cgccatcgac gaaaacggat atgaagttcg
      601 aaggtgcggg cagtttcgag caagacaact acgccggccg caacctgcac ttcggcattc
      661 gcgagcacgt gatgggcgcg atctgcaacg gcatcgcgtt gtcgaacctg cggccctatg
      721 gctccacgtt cctgattttc agcgactaca tgaagccgcc catccggctt tcgtccatca
      781 tggaagtgcc ggtgatctac gtgttcacac acgattccat tggcgtgggc gaagacggcc
      841 cgacgcatca gccgatcgaa caactggtct cgttgcgcgg tgtcccgggg ctcagcacgt
      901 atcgtcctgg cgatgcaaac gaagtcgccg aatcgtggcg tgccgcgctc gccgagccgc
      961 aacgtcctgc gtgtatcgtg gtgtcacgcc agccgatggc gactttcgac cggacgaaat
     1021 atgcatcggc gaagggcgtt cacaagggcg cgtatgttct cgccgatgct gaaggtggca
     1081 agaaaccgga agtcatcctg atggcaacgg gcaccgaagt gtctgtatgc gtcgacacct
     1141 acgagaagct caagagcgaa gggatcgcgg cgcgggtcgt ctccatgccg tcatgggatc
     1201 tgttcgagcg gcaggacgac gcgtacaagg agtccgtgtt cccgccggat gtcgacgcgc
     1261 gcgtgtgcgt ggagcaggca ggcgcgctcg gctgggatcg ctacgttggc cgtctcggtt
     1321 cgcagatcgt gatgcatacg ttcggggcat cggccccact ttccgacctg aagaagaaat
     1381 tcggcttcac gccggaacac gtctacgacg aagctaaaaa gcagatcgaa cgcgtcaaaa
     1441 ccagccataa ggagtaagcc atcatgcaga tcggaatcgt gggactaggc cgtatgggcg
     1501 cgaacattgc acgccggttg atgcgcggcg agcagacgtg cgtggtgtac gaccacgcgc
     1561 ccgaagcgac gcaggcagtc gtggccgacg gcgcaaccgg cgcgagcgac ttgggcgatc
     1621 tcgtgcagaa gcttgccgcg ccgcgctcgg tctggctgat gttgccggca ggcaagatca
     1681 ccgaagacac gctgaacgat ctctacgaga tcctcgaagc gggcgacacg atcatcgacg
     1741 gcggcaatag cttctacaag gacgacatcg tccacgcggc gaagctgaaa gagaagggca
     1801 tccatttcgt cgatgtgggc acgtccggtg gcgtgtgggg attagagcgc ggctattgca
     1861 tgatgatcgg cggggagaag gacgtggtgc tgcggcacga cccaattctg tcggtgctgg
     1921 cgcctggacg cggcgatatt cccgccacgc cgaatcgcga gggccgcgat acgcgcgtgg
     1981 aaaacggcta ta
//
LOCUS       DATGBK010000500         2541 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_52484, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000500 DATGBK010000000
VERSION     DATGBK010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2541
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52484"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VKJ77_07195"
     CDS             complement(<1..299)
                     /locus_tag="VKJ77_07195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012364209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HMC45092.1"
                     /translation="MKLCDFEVGLDQPFFLIAGTCVVESEQMTIDVAGRLKEICAKVG
                     VPFIYKSSYDKANRSSGKSFRGLGMDEGLRILGEVKKQLGLPVLTDVHSEHEIEAV"
     gene            complement(296..2020)
                     /locus_tag="VKJ77_07200"
     CDS             complement(296..2020)
                     /locus_tag="VKJ77_07200"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HMC45093.1"
                     /translation="MTKYVFVTGGVVSSLGKGIAAASLAAILESRGLKVTLLKLDPYI
                     NVDPGTMSPFQHGEVFVTEDGAETDLDLGHYERFISTKMRKANNFTTGQIYESVIRKE
                     RRGEYLGKTVQVIPHITNEIQAFLQRGAAAATCGEPDVAIVEIGGTVGDIESLPFLEA
                     ARQMSLRLGRNSACFVHLTLVPYIATAGELKTKPTQHSVQKLREIGISPHVLLCRADR
                     PIPGDERAKISLFSNVPEDAVISVWDVDSIYKIPQMLHDQGLDNIICEELKLTAKPAD
                     LSMWAGLVKKLENPQNEVTIGMVGKYVELTESYKSLIEALKHASIHTSTKVNIEYIDS
                     EQIETDGVAGLKHLDAVLVPGGFGARGTEGKIKAIRYARESKTPYLGICLGMQLAVIE
                     FARDVAGMSDANSTEFDSSTTNPVVALITEWYDRAGRVEKRTEESDLGGTMRLGSQKC
                     PIKPGTMAARIYGTDVNERHRHRYEVNNRFVPQLEAGGLVISARTPSEDLPEMMELPE
                     SMHPWFVGVQFHPEFTSSPRNGHPLFKEFVEAARAHHLALKANGQASTAAEHAPAPAV
                     AVSVGAQA"
     gene            complement(2210..>2541)
                     /locus_tag="VKJ77_07205"
     CDS             complement(2210..>2541)
                     /locus_tag="VKJ77_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010091970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC45094.1"
                     /translation="GNGGGIGGTDETAVAINRQRKLAFDREVEFRIYKTLPRTLGARV
                     AHGVPVPVGFLAGTHSKEVRHVGLDMTRRIVGGHFGWIEGSHLFPMEHPVETARALQR
                     TLNGLRV"
BASE COUNT          493 a          775 c          721 g          552 t
ORIGIN      
        1 accgcttcaa tctcatgctc agagtgaacg tcggtgagaa ccggcaagcc gagttgcttt
       61 ttcacttcgc cgagaattcg caggccttcg tccatgccaa gtccgcggaa cgatttgccg
      121 gaactgcgat tggctttgtc atacgatgat ttgtagatga acggcacgcc cactttcgcg
      181 cagatttcct tgagacgacc ggcaacgtca atggtcattt gctccgactc gaccacgcac
      241 gtgcccgcga tcaggaaaaa cggctggtcg agacccactt caaaatcaca cagcttcatg
      301 cttgcgctcc gacggatacc gccacggcag gtgcgggcgc gtgttcagca gcagtgctcg
      361 cctgcccgtt tgccttcagc gccagatgat gcgcgcgagc cgcttcgacg aattccttga
      421 acagcggatg gccattacgc ggtgatgacg tgaattccgg atggaactgc acgccgacaa
      481 accacgggtg catggattcc ggcagctcca tcatctccgg cagatcttcg ctcggcgtgc
      541 gcgcgctgat caccagcccg cccgcctcca gttgcggcac gaagcggttg ttcacctcat
      601 accggtgccg atggcgctcg ttcacatccg taccgtagat gcgtgcagcc atggtgcccg
      661 gcttgatcgg acatttttgt gaacccaggc gcatcgtgcc gcccagatcc gattcttccg
      721 tgcgcttttc aacgcggcct gcgcggtcat accattcggt aatgagcgca acaaccgggt
      781 tggtcgtcga tgaatcgaat tccgtgctgt ttgcatccga catgccggca acgtcgcgag
      841 cgaattcgat gacagccagt tgcatgccga ggcaaatgcc cagatacggc gtcttcgatt
      901 cacgtgcgta acgaatcgcc ttgatcttgc cttctgttcc gcgtgcgccg aaaccaccgg
      961 gcacgagcac ggcgtcgaga tgcttcagac cggccacgcc gtccgtttcg atctgctcgg
     1021 aatcgatgta ctcgatgttg accttcgtcg acgtatgaat ggacgcatgc ttgagcgcct
     1081 cgatcagcga tttgtacgac tcggtcagtt ccacatactt gccgaccatg ccgatggtga
     1141 cttcgttctg cgggttctca agcttcttga cgagcccggc ccacatgctg aggtcagcgg
     1201 gtttcgccgt gagcttgagc tcttcgcaga tgatgttgtc gagaccctgg tcgtgcaaca
     1261 tctgcgggat cttgtagatg ctgtccacgt cccacaccga aatgaccgcg tcttccggca
     1321 cattggagaa cagcgaaatc ttcgcgcgtt cgtcgccagg aatcggacgg tccgcgcggc
     1381 acagcagcac gtgcggcgag ataccgatct cgcgcagttt ctgcacgcta tgctgcgtgg
     1441 gcttcgtctt tagctcaccc gccgtcgcga tgtacggcac aagcgtcagg tgcacgaaac
     1501 acgcgctatt gcgaccgagt cgcaggctca tctggcgtgc ggcttcgagg aaaggcagcg
     1561 attcgatgtc acccaccgtc ccgccgattt ccacgattgc cacgtcaggc tcgccgcacg
     1621 tggccgcagc cgcgccgcgt tgcaggaacg cctggatttc gttggtgata tgcggaataa
     1681 cctgaaccgt tttgccgaga tattcgcccc ggcgttcctt gcggatcacc gactcgtaga
     1741 tctgaccggt cgtgaagtta ttggccttgc gcatcttcgt actgatgaag cgctcgtaat
     1801 ggcctaagtc gaggtccgtt tccgcaccgt cttccgtcac gaatacttcc ccgtgctgaa
     1861 acgggctcat cgtgccgggg tcgacgttga tgtagggatc gagctttaag agggtgactt
     1921 tcagaccgcg cgattcgagg atcgctgcga gggaagcggc ggcaataccc ttgccgaggg
     1981 aagacactac gccgccggtg acgaatacat atttggtcat cgctaggtgc tcgcgggaaa
     2041 aacggattat acccgaaaga cgccccataa cccagcgccg gagggacccg atttaccgtg
     2101 agcggcgggt ttcgatcgcg catttatcgg cggcctgaat gaggcttaat gggagcttga
     2161 atggcgtctc gccgtgatat gcgttaccga tatgcgttac tgatatgcat tacacccgca
     2221 gcccattaag cgtgcgctgc aatgcgcgcg ctgtttccac cgggtgctcc atggggaaca
     2281 gatgactgcc ctcgatccat ccaaaatgcc cgcccacaat acgtcgcgtc atatccagcc
     2341 cgacgtggcg gacttccttc gaatgcgttc ccgcaagaaa tccgaccggc accggcacgc
     2401 catgcgcaac ccgcgcaccc agcgtgcgcg gtaacgtctt atagatacgg aattccacct
     2461 cgcgatcgaa agcaagcttg cgttggcgat tgatggcgac ggctgtttca tcggtaccgc
     2521 cgatgccgcc tccgttgccc g
//
LOCUS       DATGBK010000501         1681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_329952, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000501 DATGBK010000000
VERSION     DATGBK010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329952"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            237..>1681
                     /locus_tag="VKJ77_07210"
     CDS             237..>1681
                     /locus_tag="VKJ77_07210"
                     /inference="COORDINATES: protein motif:HMM:NF004837.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HMC45095.1"
                     /translation="MTTLPGLMMDVPLTIRGILEHAVRNHPKREIVSRDGAGLMRYTY
                     ADFGKRVAQLAHALRKLGITGGDRVASFGWNTHRHLELYYGVPCIGAVLHTTNIRLFP
                     EQVAELLVHAGDKVVFVDSVLVPAMQKAIAVRPELAKLTYVIMGDSTETLPNACDYET
                     LLASEPTSYAYPDFDENSAAILCYTSATTGEPKGALFSHRSTIIHAFAIGLTDVFSLS
                     QRDAVLPIVPQFHVNAWGLPFLTLMVGAKLVMPGAALDPESVCNLVASEAVTFSAGVP
                     TVWLAARDRLKQTGMKLPTLTRLVIGGSAVPPGLFDDLEAMGIAVIHAWGMTEMSPVG
                     TVSYVKGELAGISPEEQRRKRLKQGAFSPIVQWKVLDDDNVEVAQDGVSRGELYVRGP
                     AVAREYYENATATRAAFKDGWFRTGDIVTVDDDGYMEIVDRSKDMIKSGGEWISSVEL
                     ENTLMGHPSVKEACVFGVPHEKWMERPVAAVV"
BASE COUNT          331 a          522 c          511 g          317 t
ORIGIN      
        1 cgaggccgta cgaaaaatgc tcgccgctgc cggaaataac gaggacgtga acggacgggt
       61 ccgcctcaag ctcatcaagt gccgccggaa tgtcggtcca ggtgtgcgga cccatggcgt
      121 ttcccttgcc gggaccggta agaatgaggt gtgcgacgtt cccgtcgcgc tcgacacgca
      181 gggacgggcg ggcggtggtg tgggacattt tcggcggtgc ctccaagtac gggacggtga
      241 cgactctgcc cgggctcatg atggatgtcc cgctcaccat tcgcggaatc ctcgaacacg
      301 ccgtccgcaa ccatcccaaa cgcgagatcg tgtcgcgtga cggtgccggg ctcatgcgct
      361 acacgtacgc cgatttcggc aagcgcgtcg cgcaactcgc gcacgcactg cgcaagctgg
      421 gcatcaccgg tggtgaccgc gtcgcaagct ttggctggaa cacgcatcgc catctcgagt
      481 tatactacgg cgtcccgtgc atcggcgccg tgctgcatac gacgaacatt cgcctatttc
      541 cagaacaagt cgccgagctg ctcgtccacg cgggcgataa agtcgtcttt gtagacagcg
      601 tgctcgttcc ggcaatgcaa aaagcaatcg ccgtacgccc cgaattggcg aagcttacgt
      661 acgttataat gggcgatagc acggaaacgc tgccgaacgc ctgcgattac gaaaccctgc
      721 ttgcgagcga acccacctcg tatgcgtatc cggacttcga tgaaaacagc gcagcaattt
      781 tatgttacac atccgcgaca acgggtgaac ccaagggcgc gctcttctcc caccggtcaa
      841 cgatcattca tgcgtttgca attggtctga ccgacgtctt ctcgttatcg caacgcgacg
      901 ccgtgttgcc gatcgttccg cagttccacg tcaacgcgtg gggcttaccg ttcctcacct
      961 tgatggtcgg tgcgaaactg gtgatgccgg gcgcggcgct cgatcccgaa agcgtttgca
     1021 atctcgttgc gtccgaagcc gtcacgtttt cagcgggcgt tccgaccgtt tggctagccg
     1081 ctcgcgaccg cctcaaacaa accggcatga aattgccgac cctcacgcgg ttggtgatcg
     1141 gcggatcggc cgtgccgccc ggattgttcg acgatctcga agcgatgggc atcgcggtca
     1201 ttcacgcttg gggcatgacc gagatgagcc cggtcggcac ggtgtcgtat gttaaaggcg
     1261 aactcgccgg catttctccc gaagagcagc gccgcaagcg cctcaagcaa ggcgccttct
     1321 caccgatcgt tcagtggaaa gtcctcgacg acgataacgt cgaggtcgcg caagacggcg
     1381 tgtcgcgcgg cgaactgtac gtgcgcggcc ccgccgtagc gcgcgagtac tacgagaacg
     1441 ccaccgcgac gcgcgccgct ttcaaagacg gctggttccg aaccggcgac atcgtgaccg
     1501 tcgatgacga cggctatatg gaaatcgtcg accgctccaa agacatgatc aagtccggcg
     1561 gcgagtggat cagctcggtc gagctggaga acacgctcat gggccatcct tccgtcaagg
     1621 aagcctgcgt cttcggcgtg ccgcacgaga agtggatgga gcgcccggtc gccgcggtcg
     1681 t
//
LOCUS       DATGBK010000502         2119 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_329969, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000502 DATGBK010000000
VERSION     DATGBK010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329969"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..797
                     /locus_tag="VKJ77_07215"
     CDS             <1..797
                     /locus_tag="VKJ77_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC45096.1"
                     /translation="VLNVDPREGSAVLAGNVLKESLLLGGQACRPLVARNGLGHAFVE
                     PALRLLQYGGAEIKLGSRVREIGFSGTDSKTRVTSLDFDDGRVDIGLHDGVVLAVPPN
                     VAQQLVPGLTAPNEFRAIVNAHFAIDPPLAFEPMTGLLNGTAEWLFAFDGRLSVTISG
                     ADRLLDTPRETLAQTIWQEVAKAARLPVERMPTWQIVTEKRATFAAIPSQENLRPGTR
                     TRWSNLMLAGDWTANGLPATIEGSIRSGQKAADLLMNPSIDFSVQR"
     gene            797..>2119
                     /gene="shc"
                     /locus_tag="VKJ77_07220"
     CDS             797..>2119
                     /gene="shc"
                     /locus_tag="VKJ77_07220"
                     /EC_number="5.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051007 - squalene-hopene cyclase activity
                     [Evidence IEA];
                     GO_process: GO:0019746 - hopanoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene--hopene cyclase"
                     /protein_id="HMC45097.1"
                     /translation="MNETVQPPGIQPVTWAALEASVARAADAILADQHPDGYWLYQLE
                     ADATIPAEYVLLVHYLAETPNLELEAKIARYLRRIQRADGGWPLFTDGAMDVSATVKA
                     YFALKMIGDLPEAEHMQRARRAIIAAGGAEKSNVFTRILLALFGVVSWRAVPMMPVEI
                     TLLPEWFPFHLSKVSYWARTVIVPLLVLNAKRPRARNPKGVRIDELFFDAPVNAGMAA
                     RAPHQHQGWFMLFRCVDAVLRAADPLFPRHTRQRAIEAAVSFVDERLNGEDGLGAIFP
                     AMANSVMMYDVLGYPEDHPHRAIARKSIEKLLIVDEAPDGEAYCQPCLSPIWDTSLVA
                     HALLEADTPNARAAVSRGLDWLVPLQILDVRGDWISRRPNIRPGGWAFQFANPHYPDV
                     DDTAVVAMAMERADRENGTALYSQAIARGREWVVGMQSSDGGWGAFEPE"
BASE COUNT          359 a          630 c          711 g          419 t
ORIGIN      
        1 ctgtgctgaa tgtggatccg cgtgaaggca gcgcggtgct tgccggcaac gtgctgaagg
       61 aatcactgct gcttggcggt caggcgtgcc ggccgctggt cgcgcgcaac ggcctgggcc
      121 atgcgttcgt cgaacccgca ttgcgtctgc tgcaatatgg cggcgcggag atcaagctgg
      181 gatcgcgagt acgtgagatc gggttctccg gcacggattc gaagacgcgt gtcacatcgc
      241 ttgatttcga cgatggccgc gtggacatcg gtctgcacga cggcgtggtg cttgccgtgc
      301 caccgaacgt ggcgcagcaa ctggtgccgg ggttaaccgc gccgaatgaa ttccgcgcga
      361 tcgtcaatgc gcatttcgct attgatccac cgctggcctt cgagccgatg accggtttgc
      421 tgaacggcac cgccgaatgg ctgttcgcgt tcgatgggcg tctttcggtg accatcagcg
      481 gcgcggatcg tctcctcgat accccgcgcg agacgcttgc ccagaccatc tggcaagagg
      541 tcgcgaaggc ggcgcgcttg cctgttgagc gcatgccgac ttggcaaatc gtcacagaaa
      601 agcgtgcgac ttttgcggct attccgagcc aagagaacct ccggccgggc acgcgtacgc
      661 gctggtccaa tctgatgctg gccggcgact ggacggccaa cgggctgccc gccaccatag
      721 aaggctcgat ccgctccggc cagaaggctg cggacctgct tatgaatccc tcgattgatt
      781 tctcggtgca acgctgatga acgaaactgt ccagccgccc ggtatccagc cggtgacgtg
      841 ggcggcgctg gaagcgtcgg tggcacgtgc tgccgatgcc atccttgccg accaacatcc
      901 cgacggctac tggctctacc aactcgaagc cgacgccacc attcccgccg agtacgtgct
      961 gctcgtgcat taccttgccg agacgccgaa tctcgaactc gaagcgaaga tcgcgcggta
     1021 cttgcgcagg atccagcggg ccgacggcgg ctggccgctt ttcaccgatg gcgccatgga
     1081 tgtcagcgcc accgtgaagg cgtatttcgc gctgaagatg atcggcgatt tgcccgaagc
     1141 cgagcatatg cagcgggcac gccgcgcgat tatcgcggcc ggcggcgcgg aaaaatcgaa
     1201 cgtgttcacg cggattttgc tggcgctgtt cggcgtggtg tcgtggcgcg cggtgcccat
     1261 gatgcccgtg gaaatcacgc tcttgcccga gtggttcccg ttccatttgt cgaaggtgtc
     1321 gtactgggcg cggaccgtga tcgtgccgct gctcgtgctc aacgcgaagc ggccgcgcgc
     1381 gcgtaatccg aagggcgtgc gcattgatga actgttcttc gatgcccccg tgaacgccgg
     1441 catggccgcg cgtgcgccgc atcagcatca gggctggttc atgctgttcc gctgcgtgga
     1501 tgcggtgctg cgtgccgctg atccgctgtt cccgcgccac acgcggcaac gggcgataga
     1561 agcggccgtg agtttcgtcg atgaacggtt gaatggcgaa gatggtctcg gcgcgatttt
     1621 ccccgcgatg gccaactccg tgatgatgta cgacgtgctc ggttatccgg aagatcatcc
     1681 gcaccgggcg attgcgcgca agtcgattga gaagctattg atcgtcgatg aagcgccgga
     1741 cggcgaggct tattgccagc cgtgtttatc gccgatatgg gacacgtcgc ttgtcgcgca
     1801 cgcgttgctc gaagccgata cgcccaacgc gcgcgctgcc gtttcgcgtg gattggactg
     1861 gcttgtgccg ctgcagattc tggatgtacg cggcgactgg atctcgcgcc ggccgaacat
     1921 caggcctgga ggatgggcgt tccagttcgc gaatccgcat tatccggacg tggacgatac
     1981 ggctgtggtt gctatggcga tggaacgtgc cgatcgtgaa aacggcacgg cgttgtatag
     2041 ccaagcgatt gcgcgcgggc gggagtgggt cgtcggcatg cagagcagcg acggcggatg
     2101 gggcgcgttc gagcccgag
//
LOCUS       DATGBK010000503         1722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_191578, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000503 DATGBK010000000
VERSION     DATGBK010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191578"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1594
                     /locus_tag="VKJ77_07225"
     CDS             <1..1594
                     /locus_tag="VKJ77_07225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006493335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SEC-C metal-binding domain-containing protein"
                     /protein_id="HMC45098.1"
                     /translation="IYGLETVVIPPNRPPKRTDKQDQIYKTAKERYDAVTRDIRECVE
                     RGQPVLVGTTSIEASELLSGLLTQAGLKHEVLNAKQHAREAAIVAEAGRPAAVTIATN
                     MAGRGTDIVLGGNVEKQSSFIDADESLSDEEKQRRIKHLEDEWQALHDRVKASGGLHI
                     IGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPE
                     GEAIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEATDV
                     AETITAMRQSVVTEVTRTHVPAGSIEEQWSAPELEEVLRNEWSLDLAVQEMINESNSI
                     DADEILEAVVTAADESYEAKVALVGRESFSAFERSIMLQTLDSRWREHLAALDHLRQG
                     IHLRGYAQKNPKQEYKREAFELFAAMLDSVKQEVTRVVMNVQIQSPEQLEEAAEQYEE
                     KGSHLENVSFQHADFEEGGAAAAAVAASATTQMINQAMAYGDDTTVATRVATDDVPKV
                     GRNDPCPCGSGKKYKNCHGKLA"
BASE COUNT          399 a          480 c          554 g          289 t
ORIGIN      
        1 gatctacggc ctggaaacag tcgtgatccc gccgaaccgt ccgccgaagc gcaccgacaa
       61 gcaggatcag atctacaaga cggcgaagga acgctacgac gccgtgacgc gcgatatccg
      121 cgaatgcgtc gagcgtgggc agccggtgct ggtcggtacc acgtccatcg aggcgtcgga
      181 gttgctgtcc ggcctgctca cgcaagcggg tctcaagcac gaagtattga acgcgaagca
      241 gcatgcacgc gaagctgcga ttgtcgcgga agccgggcgg ccggccgcgg tcaccattgc
      301 gaccaacatg gccggtcgcg gtacggacat cgtgctcggc ggcaatgtcg agaagcaatc
      361 gtcgtttatc gacgcggacg aatcgctctc cgacgaagaa aaacaacgcc gaatcaagca
      421 tctcgaagac gaatggcaag cgctgcacga tcgcgtgaag gcgtcgggcg ggctgcatat
      481 cattggtacg gaacggcatg aatcgcgtcg tatcgataac cagttgcgcg gacgtgccgg
      541 acgtcagggc gatccgggct catcgcggtt ttacctgtcg ctcgacgatc cgcttttgcg
      601 tatcttcgcc ggcgatcgcg tgcgttcgat catggaccgc ctgaagatgc cggaaggcga
      661 ggcgatcgag gcggggattg tcacgcgttc gatcgaatcg gcgcagcgca aggtggaagc
      721 gcgcaacttc gacattcgca agcaattgct cgaatacgac gacgtgtcga acgatcagcg
      781 caaggtgatc taccagcagc gcaatgaact gctcgaagcg accgacgtgg ccgagacgat
      841 caccgccatg cgtcagagtg tggtcaccga ggtgacgcga acccacgtcc cggcgggaag
      901 cattgaagag caatggagtg cgccggaact ggaagaagtg ctgcgcaacg aatggtcact
      961 cgatctcgct gttcaggaga tgatcaacga gtcgaattcc atcgatgcgg acgagattct
     1021 ggaagccgtg gtcaccgccg ccgatgaaag ctacgaggcg aaggtcgcgc tggtcggacg
     1081 tgaatcgttc agtgcgttcg agcgttcgat catgctgcag acgctcgaca gccgctggcg
     1141 tgagcacctt gccgcactgg atcacctgcg tcagggcatc catctgcgtg gttatgcgca
     1201 gaaaaacccg aagcaggaat acaagcgcga ggcgttcgaa ctctttgccg ccatgctcga
     1261 ttcggtgaag caagaagtga cgcgggtcgt gatgaacgtg cagatccagt cgccggaaca
     1321 gcttgaagaa gctgccgaac agtacgaaga gaagggcagc catctggaaa acgtgtcgtt
     1381 ccagcacgct gacttcgaag aaggcggagc ggctgcggca gccgttgcgg ccagcgctac
     1441 cacgcagatg atcaatcagg cgatggcgta cggcgacgac accacggttg ccacgcgcgt
     1501 agcgaccgac gacgtgccga aggtcggacg caacgacccg tgcccgtgcg gcagcggcaa
     1561 gaagtacaaa aactgtcacg gcaagctcgc ataatcgacg gttgaagagc agtagcgagt
     1621 aacagatagc attggagaca ggcgacgcag caatgcgtcg tttgtctttg gcaggctggt
     1681 tttggtatcc ccggacgtcc gcctttcaaa caagtcaggc tc
//
LOCUS       DATGBK010000504         2229 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_98511, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000504 DATGBK010000000
VERSION     DATGBK010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98511"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..689)
                     /locus_tag="VKJ77_07230"
     CDS             complement(<1..689)
                     /locus_tag="VKJ77_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC45099.1"
                     /translation="MTQAVEKIRLFIAPAPRTVADIFSPADLDRLRALGQVFIHEDGP
                     VTDEIFEQHAADAHIMVGQFDMPAGRLTRAANLRAIVNVEGNFLPNVDYAQCFRQGIR
                     VLNVSPVFAEPVAEAALGMAIDLARGISQADRRFRRGTEQYGLDANRDAFSLYDAPVG
                     FIGMGDLGRAILPLVAPFRGVVRAFDPWLPPAYIESLGCEPASLDTVLRESQIVFVVA
                     GVTSENQGFLTR"
     gene            complement(761..1750)
                     /gene="alsC"
                     /locus_tag="VKJ77_07235"
     CDS             complement(761..1750)
                     /gene="alsC"
                     /locus_tag="VKJ77_07235"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010103234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-allose ABC transporter permease"
                     /protein_id="HMC45100.1"
                     /translation="MNQSNTSGAPLAATPRRDFATIWQTYGTFGILVVLLILCSIASP
                     QYFLTRDNLVQVLLQSSVMVLLACGVFFTILIAGIDLSIGSVLALSGMVMAKLMMAGL
                     PVWLAVLIGGVGVGALLGAVNGALVNLTQLHPFIITLGTAAIYRGVTLIVSDSRSVFG
                     FDRSFTDVVAGRVFGVPVPIIIAVVVAGFLMFLTKFTKLGRNIYALGGNAQAAFYSGI
                     SVKLHTMVVFIIAGTCAGIAGIVTTARTAAAEPNAGVGFETFAIASAIIGGTSFFGGR
                     GQVTGVVIGGLIIGVINNILNIMNVETYYQQIVMGALIIAAVTADKLFTRKSR"
     gene            complement(1771..>2229)
                     /locus_tag="VKJ77_07240"
     CDS             complement(1771..>2229)
                     /locus_tag="VKJ77_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010103242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45101.1"
                     /translation="LNIEENIFVVPALRSTRRALSLGLIDRAQQREFGLRYKERLRIR
                     CASSTQNITELSGGNQQKAIIAKWLAAKSDLFIFDEPTLGIDIGAKAEIYSIMRALAN
                     EGKAILMVSSELPELIAVCDRIAVYKDGTVASTLANADATEESIMQVATS"
BASE COUNT          506 a          672 c          648 g          403 t
ORIGIN      
        1 cgcgtgagga aaccctgatt ttccgacgtg acgccggcca ccacgaatac gatctgcgac
       61 tcgcgcaaca ccgtatcgag cgatgcaggc tcacatccga gcgattcgat ataggccgga
      121 ggcaaccagg ggtcgaacgc cctcaccacg ccgcgaaacg gcgctacaag cggcaagatc
      181 gcgcgcccca ggtcgcccat gccgatgaac ccaaccggcg cgtcatacag cgagaacgcg
      241 tcccggttcg catcgagccc atattgctcg gtgccgcgcc gaaaccgcct gtccgcctgg
      301 ctgatcccgc gggcaagatc aatcgccatg cccagcgccg cctcggcaac gggttcagca
      361 aagaccgggc tcacgttcag gacgcgaatg ccttgcctga agcactgagc gtagtccacg
      421 ttgggaagaa aattcccttc tacattgacg attgcccgca ggttggctgc acgcgtcagc
      481 cgcccggccg gcatgtcgaa ctgcccgacc atgatgtgag catccgcagc gtgctgctcg
      541 aagatctcat cggtcacggg accgtcttca tggataaaca cttgcccaag cgcgcggagc
      601 cgatcgagat cggcaggact gaaaatgtcc gcaacagtac gtggggcagg tgcgatgaac
      661 agacggattt tttctacggc ttgagtcatg ggtactccgg ggaacgaata tcggaagcgg
      721 cgccgcagtc aggaaagaca tgcgacgcct gcagattgat ttaccgggac ttgcgggtga
      781 acagcttgtc agccgtgacc gcagcaataa tgagtgcgcc catcacgatc tgctggtagt
      841 aggtctctac attcatgatg ttcagaatgt tgttgattac gccgatgatc aacccgccta
      901 ttacaacgcc tgtgacctgt ccgcggccgc caaaaaaact tgtcccgccg ataatcgccg
      961 acgcaatcgc gaaggtctcg aagcccactc cggcgttcgg ttccgcagcg gcggtgcgcg
     1021 cggttgtgac gatcccggca atgcccgcgc aggttcccgc aatgatgaaa acgaccatgg
     1081 tgtgcaactt cacgctgatg cccgagtaga acgcggcctg cgcgttgcca ccgagtgcgt
     1141 agatgttgcg gccgagcttc gtgaacttgg tcaggaacat caggaatcct gccaccacga
     1201 ccgcaatgat gataggcacc ggtacgccga aaacacggcc ggcgacgaca tcggtaaagg
     1261 agcggtcaaa gccgaataca gatcgcgagt ccgacacgat gagcgtaacg ccccggtaaa
     1321 tcgcggcggt gcccagcgtg atgatgaacg gatgcaattg cgtgagattg accaacgcgc
     1381 cgttgaccgc gccgagcaac gccccgacgc cgaccccgcc aatgagcacc gcgagccaca
     1441 cgggcaagcc ggccatcatc aacttcgcca tcaccatacc ggagagcgcg agcaccgagc
     1501 cgatggacag gtcgatgccc gcgatcagga tggtaaagaa cacgccgcaa gcaagcagga
     1561 ccatcacgga actctgcaac aggacctgga caaggttgtc acgcgtcagg aaatactgcg
     1621 gcgacgcgat gctgcacaaa ataagcagca ccacgagaat gccgaatgtg ccgtacgtct
     1681 gccatatcgt agcgaaatcc cggcgtggtg ttgccgcaag cggcgcaccg gatgtgttgg
     1741 actggttcac tttgcctcct tcgttgtcgc tcatgaggtg gcgacttgca tgatcgattc
     1801 ttccgtggcg tcggcattgg cgagcgtgct cgctaccgtg ccgtccttgt aaacagcaat
     1861 gcgatcgcac accgcgatga gctccggcag ttccgacgac accatgagaa tggcctttcc
     1921 ttcattggcg agagcacgca tgatcgaata gatttcggcc ttcgcaccaa tgtcgatacc
     1981 gagagtgggt tcatcgaaaa tgaagagatc gctctttgcc gcgagccact tggcgatgat
     2041 cgctttttgc tgattgccac ccgatagttc cgtgatgttc tgggtggaag acgcacatcg
     2101 gatacgaagc cgctccttgt agcgcaggcc aaattcacgc tgctgcgcac ggtcgatcag
     2161 tccgagcgag agtgcacgcc gcgtactgcg caacgcggga acgacgaaga tgttctcttc
     2221 aatattcag
//
LOCUS       DATGBK010000505         2012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_29549, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000505 DATGBK010000000
VERSION     DATGBK010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29549"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..278
                     /locus_tag="VKJ77_07245"
     CDS             <1..278
                     /locus_tag="VKJ77_07245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006398417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HMC45102.1"
                     /translation="GNLVLNPATHEAALDGKPIMLSAREFGLIHALAERPGVVLSRAQ
                     LEEKLYGWGHEVESNTVEVYVHSLRRKLGANLIRNVRGVGYMVPKQT"
     gene            275..1582
                     /locus_tag="VKJ77_07250"
     CDS             275..1582
                     /locus_tag="VKJ77_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015601431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HMC45103.1"
                     /translation="MTSIRRQLLLWLLSGLALAVVTAGVRIYTQTLAEANELFDYHLT
                     QMAASLPNDSFGPLPPSQSNGSEASDGLVLQIWDRNGLQLYFSQPASKLPQRAELGFS
                     TVETPRGSWRVYSALEQNNVVQVAQPMSVRQELAAGMALRTLVPLLLLLPVLGILIWL
                     TVGRGLRPLDEMASALGRRTPDSLDALPQGGLPVEIRPLVQAVNDMLVRLARALESQK
                     AFVADAAHELRTPLTAVQLQIQLAERAKTDDERKAAFAQLKQGQSRAAHLVQQLLTLA
                     RQEPGLAAQPFSSVELAHVMRLVVSEYAPFAAKKNIDIGVSDNRQASVSGDFEALRVM
                     LGNLIDNAIQYTPPGGAIDVALRLHDGNAVIEISDTGPGVPEQERERVFDRFYRRDTA
                     HTAGSGLGLAIVKNIADRHHAGILLENRAPGPGLRVSVTFPPD"
     gene            1704..>2012
                     /locus_tag="VKJ77_07255"
     CDS             1704..>2012
                     /locus_tag="VKJ77_07255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HMC45104.1"
                     /translation="MKPKVLVRSLIAAGVISAVGAGAFSAGHWFPQEAVAANAPVAVA
                     STSTASALLPDFTGIVDRNGPAVVNISVTHDLKAGAAAPQLQGLDRNSPFYEFFRQFP
                     G"
BASE COUNT          375 a          629 c          619 g          389 t
ORIGIN      
        1 ttggcaatct ggtcctcaac ccggcgacgc acgaagcggc gctggacgga aaaccgatca
       61 tgctttccgc gcgcgagttc ggcttgatcc atgcgctggc cgagcggccc ggagtcgtgc
      121 tttcgcgcgc gcagctcgag gaaaaactct acggctgggg tcatgaagtg gaaagcaata
      181 ccgtcgaagt gtatgtccat tccctgcgcc gaaaactggg tgcaaacctg atccgcaacg
      241 tccgcggtgt cggctatatg gtaccgaagc agacatgaca tctatccgcc gccagctgct
      301 gctctggttg ttatcgggcc tcgcgcttgc cgtcgtcact gcgggcgtgc gaatttacac
      361 gcagacgctg gcggaagcga acgaactgtt cgactaccat ctcacgcaaa tggcagcttc
      421 gctcccgaat gactcgttcg gcccgttgcc gccgtcacaa tcgaacgggt cggaggccag
      481 cgatggattg gtgcttcaga tctgggaccg caacggcttg cagctgtatt tttcccaacc
      541 tgcatcgaaa ctgccgcagc gcgcggagct cggcttctcg accgtggaaa cgccgcgagg
      601 aagctggcgc gtgtacagcg cgctggagca aaacaatgtc gttcaagtcg cgcagccaat
      661 gagcgtgcga caggagctgg ctgcgggaat ggcgctgcgc accctggtcc cgctgctctt
      721 gttgcttcca gtgctcggca tcctgatctg gctcacggtt gggcggggac tgcggcccct
      781 ggacgaaatg gcttccgcgc tcggacggcg cactccggac tcgctcgatg ccttgcctca
      841 gggtggactg cccgtcgaaa tccggccgct ggtccaggcc gtaaacgaca tgctcgtgcg
      901 gctcgcgcgt gcgctcgaat cgcaaaaggc ctttgtcgcc gatgcggcgc acgaactgcg
      961 caccccgctc accgccgttc agttgcagat tcagcttgcc gagcgggcga aaaccgacga
     1021 cgaacgcaag gcggcatttg cccaactcaa gcagggacag tcacgggcgg cccacctggt
     1081 gcagcagttg ctcacgctag cccgccagga gccgggcctt gccgcgcagc cgttttcgtc
     1141 cgttgaactg gcgcacgtga tgcgtcttgt ggtatctgaa tacgcgcctt tcgcggccaa
     1201 aaagaacatc gacattggcg tcagcgacaa ccggcaggcg agcgtttccg gcgacttcga
     1261 agcgctgcgc gtcatgctgg gcaatctgat cgacaacgcg attcaatata cgccgccagg
     1321 cggagccatc gatgtcgcct tgcgcctgca cgatggcaat gcggtcatcg agatctccga
     1381 caccgggccc ggggtgccgg aacaggagcg cgagcgtgtg tttgaccggt tctatcgccg
     1441 cgatacggcc cacaccgcgg gaagcggatt gggactggca atcgtgaaaa acatcgccga
     1501 tcgccatcac gccggcattc tgcttgagaa tcgagctccc ggaccggggc tgcgcgtgtc
     1561 ggttacattc ccgcccgatt gagccctccg catttcccgg atcacgcaat ctgttacttg
     1621 ctttaagttt gccttaagcc agcacgccta agctgttcgg catgacgggg atgttccctg
     1681 gcagccaacg caaggagtgc atgatgaaac ccaaagttct agttcggagt ctgatcgcgg
     1741 caggcgtgat atcggccgtc ggcgcgggcg cgttctcggc cggtcattgg tttccgcagg
     1801 aggccgttgc cgccaatgcc ccggtcgcag tagcaagcac atcgacggcg agcgccctgc
     1861 ttcccgactt taccggcatt gtcgatcgca acgggccggc tgtggtcaat atcagcgtga
     1921 cgcatgacct caaggccggg gcagcggcgc cgcaacttca gggactcgac cgcaatagcc
     1981 cgttttatga atttttccgc caattccccg gt
//
LOCUS       DATGBK010000506         3360 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_29592, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000506 DATGBK010000000
VERSION     DATGBK010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29592"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..573)
                     /locus_tag="VKJ77_07260"
     CDS             complement(160..573)
                     /locus_tag="VKJ77_07260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007000069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC45105.1"
                     /translation="MMNEVARLGHTRIVLIEDDLESRESLRMLLEEEGAEVVAVADAE
                     EGAETVIRELPDAVICDIDLPMMDGFYLIQRLRDHEIRGNLTPSIAIALTGHDGDEYR
                     LRSIGEGFQHFMTKPVHPDVLVTLIQQSLSARMLS"
     gene            complement(978..1733)
                     /locus_tag="VKJ77_07265"
     CDS             complement(978..1733)
                     /locus_tag="VKJ77_07265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC45106.1"
                     /translation="MLQHFRLLEPVFDAMPDIVFFVKDAQARYALVNRALASRCGLKD
                     KLGLLGKTAEEVFPQRFGRIYTAQDQSIIAQGNPMIDQLELHLYPARQPGWCMTSKQP
                     LHDAHGTVVGLAGISRDLQADEGTHPAYSRLAAVVQHIQSNFVQPLNMPHLAAMANMS
                     IAQLERYFHKVFHLTPRQVLLKTRLDAATALLFTHDKVTDVAALCGYTDHSAFTRQFK
                     ATVGLTPTEYRALLRSHQVLTHPATHAAAKLSL"
     gene            complement(2065..3018)
                     /locus_tag="VKJ77_07270"
     CDS             complement(2065..3018)
                     /locus_tag="VKJ77_07270"
                     /EC_number="5.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyproline epimerase"
                     /protein_id="HMC45107.1"
                     /translation="MKILHFIDSHTGGEPTRLVTSGGPDLGDGTLAERLENLRTKHDD
                     WRAGVVTEPRGSDVIVGALLCEPDDPACAAAVIFFNNVGYLGMCGHGTIGLIVSLAYL
                     GKIQPGSHRIQTPAGIVEATLHQDGSVSVRNVPAYRYRQAVHVDVDGYGSLTGDIAWG
                     GNWFFLVADHGQDLVATNLTQLTAVTDAIRNALQAQGITGADAAVIDHIELFADSPRA
                     GIDSRNFVLCPGSAYDRSPCGTGTSAKVACLAADNKLAEGEVWRQESIIGSVFEASYR
                     HSGELAGQAVIPTITGHAHIMAEGRLCFDSTDPFAWGIPAA"
BASE COUNT          643 a         1022 c         1023 g          672 t
ORIGIN      
        1 cgacgtgatc ttgctgggca ttgcggtgat taccggcgcc acccgcgcgc gcaatcgcga
       61 ccggtcgtaa gagcgtcatc gactgtcatt agcgcgcagg gcgcatcggt ccccgcgggt
      121 gtcggccggc ggagcggata aacgctagcg gataaaacgc taagacagca tgcgcgcgct
      181 aagcgactgc tggatcaatg tcacgagcac atcgggatgc acaggttttg tcatgaagtg
      241 ctggaaccct tcgccgatgc tgcgcaggcg gtattcgtcg ccgtcgtggc ctgtcagggc
      301 aatcgctatc gaaggcgtga ggttgcctcg aatctcatgg tcgcgcaggc gctggatcag
      361 gtaaaaacca tccatcatcg gtaggtcgat gtcgcagatg acagcgtcgg gcaactcccg
      421 gatgaccgtc tcggcgccct cttcggcgtc cgccacggcg acgacttccg cgccttcctc
      481 ctccagcagc attcttagtg actcccggct ctccaggtca tcttcgatca gcacaatcct
      541 ggtatgtccc agtctcgcta cttcattcat cattatcttt tctaacagcc caaacaggat
      601 ttcggtgcca atgtcgcagc gctcgcgtct cactcactgc ggaccttgcg gcacgacggc
      661 atgagatcca tgcggcaccg tgtgatctgc cgcgcgcgcc ggtgtcgaac gtcgcgcgga
      721 ttgaaaattc aacgggcgca gtatgcatca ttgcgtgttc gtgcaagctt tcagcaaaaa
      781 acagaccgag cgcagaaaca gcatgaggaa ccgaggcgaa agcccctctg cgcggggctt
      841 tgtgcaaacc ctaatgtgtt tttgacagcc ctgcccgaag gcacgcgtcg gcggcgtatc
      901 cacccgcatt tgccaccgcg caggtaactt tttacccggc gtgccgtttt caaagttcag
      961 acgtatcgac gccgatatca cagtgaaagc tttgctgcag catgggtcgc gggatgcgtt
     1021 agcacttgat gcgagcgcaa cagcgcgcga tattcggtcg gcgtcaggcc cacggtcgcc
     1081 ttgaactgtc gcgtgaacgc actgtgatcg gtgtagccgc atagcgccgc tacgtcggtt
     1141 accttgtcgt gcgtgaacag cagcgctgtc gccgcatcga gccgcgtctt gagcaacacc
     1201 tgacgcggtg tcagatgaaa gaccttgtga aaataacgct cgagctgggc aatcgacatg
     1261 ttcgccatcg ccgccagatg cggcatgttc agcggctgca caaagttgct ctggatatgc
     1321 tggacgacgg ccgcgagccg gctgtaagcc ggatgcgtcc cttcgtccgc ctgcaggtcg
     1381 cgcgagatac cggccaggcc aacgaccgtg ccgtgtgcat cgtggagcgg ttgcttggac
     1441 gtcatgcacc agccgggttg acgcgccggg tagagatgca gctcgagctg gtcgatcatc
     1501 ggattgccct gcgcgatgat cgactggtcc tgcgccgtat aaatgcggcc aaagcgttgc
     1561 gggaagactt cttccgcggt cttgccaagc agccccagct tgtccttcag gccgcagcgc
     1621 gaagccagcg cacggttcac gagggcgtaa cgcgcctgcg cgtccttcac gaagaaaacg
     1681 atatcgggca tcgcgtcgaa gaccggttcc agcagcctga aatgctgcag catggcctcg
     1741 agcgtcgcgg cgcctgcggg agcctgcagc gtggcgtgca aggcgggtgg agcggtgccg
     1801 tgttcgggtt cagcatgcgc cggacggtcc gtcgtaatgg tcattcgcgt ctcgctggcg
     1861 tcgtcaggtt cgcaagtgcc gcccatgcca cgtgtgtcgc gtggcatggg cgcgcaccgc
     1921 gctgcgcccg attatagagg cgagaagcgt ccgtcaaaat tggtgttgac gacagggacg
     1981 cttgaggtaa tcggcggacg acggaggacg aatacgcagc ggccgcgttg caccgaccgg
     2041 gactgacaac gtcccggtct gcgctcaggc tgccgggata ccccaggcga acgggtctgt
     2101 gctgtcgaag cagagtcggc cttcggccat gatgtgcgcg tgtccggtaa tggtcgggat
     2161 caccgcctgg cccgcgagtt ctcccgagtg ccggtagctc gcttcgaaca cgctgccaat
     2221 gatgctttcc tgccgccaca cctcgccttc ggccagttta ttgtcggcgg cgagacaggc
     2281 gactttcgcg cttgtgcctg tgccgcacgg cgaacggtcg taggcgctgc cgggacacag
     2341 tacgaaattg cggctatcga ttcctgcacg cggcgagtcc gcgaacaatt caatgtgatc
     2401 gatgaccgcg gcgtccgcgc cggtaatgcc ttgcgcctgc aatgcattac gaatagcgtc
     2461 tgttaccgcc gtcaactggg tcaggttcgt tgcaacgaga tcctggccgt gatcggcgac
     2521 gagaaaaaac cagttgccgc cccaggcgat atcgcccgtc agtgacccgt agccgtccac
     2581 atccacgtgg accgcttgcc ggtatcgata cgccggtacg ttgcgcacgc tcacgctgcc
     2641 atcctgatgc agcgtggctt cgacaatacc cgcaggcgtc tggatccggt gcgagccggg
     2701 ctgaatcttc cccaggtaag caagagacac gatcaggccg atcgtgccgt ggccgcacat
     2761 gccgagatac ccgacgttat tgaagaagat gaccgccgcc gcacacgcgg ggtcatccgg
     2821 ctcgcacaac aatgccccca cgatcacgtc cgaaccgcgt ggttcggtga ccacgcccgc
     2881 ccgccagtcg tcgtgtttcg tgcgaaggtt ttccaggcgc tcggccaggg tgccgtcgcc
     2941 cagatccggc ccgcccgacg taacaaggcg agtgggttcg ccgcccgtat gggaatcgat
     3001 gaagtgcagg attttcatgc ttacatacta gaaatttgga cgtgacccgt cttggtggcg
     3061 ctcagcgaat ttgatgccga tttcggcata tatgacgttc ttttggcgaa cctccaagcc
     3121 cttggataac gcgcgttcac cgcctggttt cgctgtgagc acggctgtca ctcgcgaaac
     3181 tcagaagctc acggttatgc cgaaatcggc atcgtaattg cgcgcaacat gcaagacggc
     3241 ccattctgca atgcttagac tgcactcaac ccattacttt taggagagcc gccatggcgc
     3301 atatctggga aggcgtaatg cctgccgtca cgaccaagtt caatgcggat ttcagcatag
//
LOCUS       DATGBK010000507         1953 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_52610, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000507 DATGBK010000000
VERSION     DATGBK010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52610"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1017
                     /locus_tag="VKJ77_07275"
     CDS             <1..1017
                     /locus_tag="VKJ77_07275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45108.1"
                     /translation="TAIARATFAATEKYPAFATYHLHEVFHNGKGNDSVFDDTIKQRL
                     GDGRAIFHNQATHEEAARNDLHMSPKAVLLGSPTLRGFFSYTLLGTRFLFGTTESRTY
                     AEAPTNADTVSRSLRGFSVAFAPDATPQAGHLIFTPVTDDTRNASAHLTDVYYTPSTL
                     MPTHIVFEGPGNTVYDRRFEIIDGQLVGSGVYARHTFSRVALFAQVTVESNISITDCH
                     FSNDPPDKRLAFPSEIAVAPSLLGDYIGTYQMATTWRSTSARDPERQGPAVNLVIAEA
                     DGHLTLSVGGNQAVRLLAETPSKFFYKSGFAEIGFFRDATTNTVARLVLYQGDYQREG
                     TLVR"
     gene            complement(1014..>1953)
                     /locus_tag="VKJ77_07280"
     CDS             complement(1014..>1953)
                     /locus_tag="VKJ77_07280"
                     /inference="COORDINATES: protein motif:HMM:NF014476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ornithine cyclodeaminase family protein"
                     /protein_id="HMC45109.1"
                     /translation="TEADVAATLPMTVAIAALDRACHDLAAGKAMNAPRQRVKSDGTI
                     LNVLVASYDGRLGHKSYTTAPHGTRFWFTLYATSGEMLAIIEANTLGQIRTGAASGLA
                     TRALARANARTLGVIGTGFQAHTQIEAICASRPIERVRVWGRNPERLRAFCTEMTARL
                     KRPIDAAAGAREAIEGADVVVTITNSMRPVFDGVWLAPGTHVNAAGANRATSVEIDVE
                     TVRRAAIITVDDVAQARTESGALRAASEAGAFRWLEAVRLADIVAGRQPGRTGDDQIT
                     LFESLGIGLWDIAVANHVYDACVTAGIGMELPIRVP"
BASE COUNT          401 a          568 c          562 g          422 t
ORIGIN      
        1 accgcgatcg cacgtgcaac ttttgcggcc accgagaaat atccggcatt cgctacgtat
       61 catctacacg aggttttcca caacggcaag ggtaacgata gcgttttcga tgatacgatt
      121 aagcagcggc ttggcgatgg gcgggccatt tttcacaatc aagccacgca cgaagaagcc
      181 gctcgcaacg atctgcacat gtcaccgaag gcggtgctgt taggcagccc aacgcttcga
      241 gggtttttct cctacacgct cttgggtacg cgatttctgt tcggaacgac cgaatcaaga
      301 acgtacgctg aggcgccaac aaacgcagat acggtttctc gcagccttcg tggattttcc
      361 gtcgctttcg cccctgatgc gacgccacaa gcaggtcact tgatcttcac gccagtgact
      421 gacgatacac gcaacgcatc cgcacatctc accgatgtgt actacacacc gtcaactctc
      481 atgccgacac atatcgtctt cgaggggccg ggcaatacgg tctacgacag gcgctttgag
      541 attatcgacg ggcaattggt gggaagcggt gtctatgcac gtcacacgtt tagtcgggtc
      601 gctctgtttg cgcaagtgac ggttgaatcg aatataagca tcacggattg tcacttcagc
      661 aacgatccgc ctgataagcg gcttgcgttt ccatcggaaa ttgcggtagc accttcgctc
      721 ttgggtgact acattgggac atatcaaatg gcgacgacct ggcgttcgac gtccgctaga
      781 gatccagaac gccagggtcc ggccgtgaac ctcgtcatag ccgaggctga tgggcatctc
      841 accctttcgg tgggtggcaa tcaggcagtt cggcttcttg cggaaacccc ttcgaaattt
      901 ttctacaaga gcggatttgc cgaaatcggc ttttttcgcg atgcaacaac aaatacggtg
      961 gctcgtcttg tgttgtatca aggcgattac cagcgcgagg gcacactcgt tcgttaaggg
     1021 acgcgaattg ggagttccat tccgataccg gccgtaacgc aagcatcgta aacatgattt
     1081 gcgacggcga tatcccatag gccgattcca agcgattcaa agagcgtgat ctgatcgtcg
     1141 cccgtacgtc cgggttggcg gccggcgacg atatctgcaa gtcgtacggc ttcgagccag
     1201 cgaaatgcac ccgcttcgga agctgcccgt aaggcgcccg attctgtgcg cgcttgggca
     1261 acatcgtcga cggtgatgat ggcggcgcgg cggacggttt cgacatcaat ttcgaccgac
     1321 gttgcccgat tcgcgcccgc ggcattaacg tgcgtccccg gcgcaagcca tacgccgtcg
     1381 aaaaccgggc gcatcgagtt ggtgatggtg acaacgacgt cggccccctc gatcgcttcg
     1441 cgcgcaccgg cggcggcatc aatcggccgt tttagccgcg ccgtcatttc ggtgcagaat
     1501 gcgcgcagac gttcgggatt gcggccccac acgcgtacgc gctcgatcgg ccggctcgcg
     1561 cagatcgctt caatttgcgt gtgcgcttga aagcccgtgc cgatgacgcc cagcgtgcgc
     1621 gcgttcgctc gcgctagtgc gcgggtcgca agacccgaag cagcgccagt gcgaatttgt
     1681 ccgagcgtgt tggcttctat gatcgccaac atctcgccac tggtcgcata cagcgtaaac
     1741 caaaaacgcg tgccgtgcgg agccgtggta tatgatttgt gaccgagccg cccgtcgtat
     1801 gaggcgacaa gaacgttaag tatcgtaccg tctgatttta cgcgttggcg cggagcgttc
     1861 atcgccttgc ctgccgcgag gtcgtgacag gcgcgatcga gcgctgcgat cgcgaccgtc
     1921 atcggcagcg tcgcagccac atcggcttcg gta
//
LOCUS       DATGBK010000508         1907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_98608, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000508 DATGBK010000000
VERSION     DATGBK010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98608"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1326)
                     /locus_tag="VKJ77_07285"
     CDS             complement(<1..1326)
                     /locus_tag="VKJ77_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC45110.1"
                     /translation="MNDTTIDLATATLEPPAVLIVDDMPANLSVVVESLEGQGFRVLV
                     ALDGLEALERAAFSQPDLILLDVKMPGIDGYETCRRLKSNSETSDIPVIFMTSMSATA
                     DVIEGLAAGGVDYVTKPIRVDEVVARIGTHLALRTLQQQLLTRNMQLQHEIAAREKTQ
                     KALSDARDELEARVAQRTEELARANVSLNLEIVERRGVEARLKESEARFRAIVETSPV
                     PLCITSMPEGDILYMNQPMRELFALDTTQPVLGNMVDLYASPKERGQLMCHLRDEGSL
                     RNVELSFRRPDGTSFWAVANARVATYGDVPAIYVGLYDITARRKADEKLRASEASLAN
                     AQRLARLGDWAWDRDSGLTHWSTELYRILGLEPLVVKPSYSAYLALVHPDDHATVRRA
                     IRVLLSKAQPFGIDHRVTSPAGTTRIVRLQAELVDAREGQSWGIVGTVQD"
     gene            complement(1323..>1907)
                     /locus_tag="VKJ77_07290"
     CDS             complement(1323..>1907)
                     /locus_tag="VKJ77_07290"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC45111.1"
                     /translation="IDMLGQIGFDMSEAASGQEALEKARLKRPSMVLTDIVMPEMDGL
                     ETMRRLRLLPDFAGVPIIAISASPTGGDEMRSLSAGADAFVAKPIHLDTLLAKIAALL
                     SLTWTYESLGEPLAQPAATMPCPAVPSHEMQNLHRLARQGNMREIVLWAERIATLDER
                     YSAFATELRSLAKNYRTKAIVQFVERHLEGGHAS"
BASE COUNT          334 a          629 c          577 g          367 t
ORIGIN      
        1 gtcctggacg gtgccgacaa taccccacga ctgcccctcg cgcgcatcca cgagttctgc
       61 ctggagccgg acgatgcgtg tcgtcccggc cggactcgtg acgcgatggt cgatgccgaa
      121 gggctgcgcc ttggagagca gcacacgtat tgcgcgcctg acagtggcat ggtcgtcggg
      181 atgaaccagc gcgagatagg cgctataact cggcttcacg accaagggct ccagtccgag
      241 aatgcggtag agctcggtcg accagtgcgt gagcccgctg tcgcgatccc acgcccagtc
      301 gccgagccgc gccaagcgct gcgcgttggc gaggctcgct tcgctcgcac gcagtttctc
      361 gtcggccttc ctgcgcgccg tgatgtcgta aagccctaca taaatagccg ggacgtcacc
      421 gtaggtcgcg acccgtgcgt tcgccacggc ccagaacgag gtgccgtccg gccgcctgaa
      481 actcaactcg acgttgcgca gactaccctc gtcgcgcaga tggcacatca gttgaccgcg
      541 ctccttgggc gaagcataca ggtcgaccat attgccaagc accggttgcg tcgtatcgag
      601 tgcaaagagt tcgcgcatcg gctggttcat gtagagaatg tcgccttcgg gcatggacgt
      661 gatgcacagc ggaaccgggc tcgtctccac aatcgcgcga aaccgcgcct cgctttcctt
      721 cagccgcgcc tccacgcccc tgcgttcgac aatctccagg ttgaggctga cattggcccg
      781 cgccaattcc tcggtgcgtt gcgctacccg cgcttcgagt tcatcgcggg cgtcgcttaa
      841 cgctttttgg gtcttctcgc gtgcggcaat ttcatgctgc aactgcatgt tcctcgtcag
      901 cagttgctgc tgcagcgtgc gcaaggccag atgcgtgcca atgcgcgcca cgacctcgtc
      961 aacccggatc ggcttggtca catagtcgac gccgcccgct gccagccctt cgatcacgtc
     1021 ggcggtcgcg gacatcgacg tcatgaagat caccggaatg tcgctggttt cactattcga
     1081 tttaagccgc cggcaggtct cgtagccgtc tatgccgggc atcttgacgt cgagcaggat
     1141 gagatccggt tgcgagaacg ccgcgcgttc cagcgcttcc agaccatcca gtgccacgag
     1201 cacgcgaaag ccctgcccct cgagactctc caccacgacg ctcaggttag cgggcatgtc
     1261 gtccacgatc aggaccgcag gcggttccag cgtcgcagtt gcaaggtcga tagtcgtgtc
     1321 attcatgacg cgtgcccccc ttcaagatgt cgctcgacga attgcacgat cgccttggtc
     1381 cgatagttct tcgcaagcga gcgcaattca gtagcgaacg cgctgtaacg ctcgtcgagg
     1441 gttgcgatgc gttcggccca caacacaatc tcgcgcatgt tgccctgccg cgcaagccgg
     1501 tgcaggttct gcatttcatg cgaaggcacg gccgggcacg gcatcgtcgc cgcgggctgg
     1561 gccagcggct cgccaagcga ctcataggtc caggtgagcg agagcagcgc ggcaatcttc
     1621 gccagcagcg tgtcgagatg gatgggcttc gccacgaacg cgtcggcgcc ggcgctcagg
     1681 ctgcgcattt cgtcgccgcc cgtcgggctg gcggagatcg cgatgatggg cacaccggca
     1741 aagtccggca aaagccgcaa gcggcgcatg gtttcgagtc cgtccatctc gggcatcacg
     1801 atgtcggtca ggaccatcga tgggcgtttc agccgcgctt tctccagcgc ctcctgaccg
     1861 ctggccgctt cactcatgtc gaaaccgatc tgccccagca tgtcgat
//
LOCUS       DATGBK010000509         1957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_52652, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000509 DATGBK010000000
VERSION     DATGBK010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52652"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..456
                     /locus_tag="VKJ77_07295"
     CDS             <1..456
                     /locus_tag="VKJ77_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HMC45112.1"
                     /translation="GEVIAAQRMLRDEWGIEAAVWSVTSFTELQRDGMGSERLARLGE
                     TAPAPYVSTMLGASRGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRQALR
                     EFFEVDRASIVIAALKALADDGEIDIAIVRKASQQYGKVGSALGAPWQR"
     gene            704..1474
                     /locus_tag="VKJ77_07300"
     CDS             704..1474
                     /locus_tag="VKJ77_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009899860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HMC45113.1"
                     /translation="MSAPLLDLAKTQLTDGPVVFAVELSGDVARVTGSHRHARGQIFG
                     AVRGLLSVETDDSQWVVPAIHAVWLPPNRAHSVRSHGTFTGWSVYVSESACADLPHEP
                     CTIRTSSLLREAVSRAASWHDGTLDDAQMRVAGVILDEIRSSPPEAFGLPMPRDVRVL
                     RIARALADNLADNRRLEEWAAWGGVATRTLTRRFIDETGFSFSEWRQRARLMRALEML
                     ASGAAVTTIALDLGYENVSAFIAMFRRTFGVTPTRYFV"
     gene            1708..>1957
                     /locus_tag="VKJ77_07305"
     CDS             1708..>1957
                     /locus_tag="VKJ77_07305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006494623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HMC45114.1"
                     /translation="MNELTLLTEADDRARRYTESIPGRRVFPDQAALQALARFNEPLP
                     ARGYAPEDVLRMLDDIGSPGTVVSNGPHYFGFVIGASLP"
BASE COUNT          359 a          570 c          621 g          407 t
ORIGIN      
        1 ggcgaggtca tcgcggcgca gcggatgttg cgcgacgagt ggggcattga ggcggcagta
       61 tggagcgtga cgagcttcac tgaattgcaa cgcgacggca tggggtctga aaggctcgca
      121 cggctcggcg agacggcacc cgcaccctat gtgagcacga tgcttggcgc atcgcgtggc
      181 ccggtgattg cggcaaccga ctacgttcgc gcggtgcccg aactgatccg cgcctatgtg
      241 ccgcgtcgct atgtgacgct tggcaccgac ggcttcggtc gcagcgacac ccgtcaggca
      301 ttgcgcgagt tctttgaagt ggatcgcgca tctattgtga tcgctgcgtt gaaagcgctg
      361 gccgacgacg gtgagatcga tatcgcaata gtgcgaaaag cgtcgcagca gtatgggaag
      421 gtggggtcgg cgttgggagc tccttggcaa cggtaggtga acggagagcg cggataacgg
      481 ggcaggggtg atgccgcgcg aaaaccaacc ggtcaatcaa acaatttcgt aacagcttcc
      541 gggagaacca ttcgatccag gccgcattgc catgtatcaa gactgcaagc tctggaggat
      601 cggacgactt gcgcgacgaa cctgtcgccc gctgacggga cttttatatt gtgcggagtc
      661 ctggcgctgc ggtataagag ccgttccaga gggctttccg gccatgtccg ctccgcttct
      721 tgatcttgca aaaactcaat tgaccgacgg cccggtggtg ttcgcagtcg agctgtccgg
      781 cgatgttgcg cgcgtcaccg ggtctcatcg ccacgcccgt ggtcagatct tcggtgcggt
      841 tcgggggttg ctgtccgttg aaaccgatga cagccaatgg gtcgtgcctg cgatccacgc
      901 agtctggctt ccaccgaacc gcgcgcattc tgttcgctca cacggcacgt ttacagggtg
      961 gagcgtctac gtcagtgaga gcgcctgtgc ggatcttccg catgaacctt gcacgattcg
     1021 cacttccagc ctgttacgcg aggccgtgag tcgcgcggca agctggcacg acggaacact
     1081 ggacgacgcg cagatgcgcg tggcaggtgt catcctcgat gaaattcgct cgtcaccgcc
     1141 cgaagctttc ggcttgccaa tgccgcgtga tgtgcgcgtg ctcaggatcg ctcgcgcgct
     1201 tgccgacaat ctcgccgata accgccgcct ggaagagtgg gccgcctggg gcggcgttgc
     1261 gacgcgaacc ttgacgcgac ggtttatcga cgagacgggg ttcagctttt ccgaatggcg
     1321 ccaacgcgcg cgtctgatgc gggcgttgga gatgcttgca tcgggcgcag ccgtcacgac
     1381 cattgcgctc gaccttggct atgaaaacgt cagcgcgttt atcgccatgt ttcgccggac
     1441 ctttggcgtg acgccgaccc gatattttgt ctaacgctta ggcgctcacg aaacgattga
     1501 gctttatggt caaccgtcgg gctcggtgtc cgcagtcacc ttttaccccg ggtctccctc
     1561 tatcagcgcg cgggatcgac gcgggtctgc gcgctcagcg ccggcacaaa cctgcttgcg
     1621 ctggtattct ggcagctgac atggcgatag atgtttggca agcaccttga gtctcttcgc
     1681 atcccttaat aatttgacga aaagcccatg aacgagctaa cactgctgac cgaagccgat
     1741 gatcgggcac gccgctatac cgagtccatc cccggacgac gagtatttcc cgatcaagcg
     1801 gcgctgcagg cgctcgccag attcaacgag ccgctaccgg cacgcgggta tgcgccagaa
     1861 gacgtattgc ggatgttgga cgatatcggt tcgcccggca cggtggtctc gaacggacct
     1921 cattacttcg gctttgtgat tggcgcgtcg ctgcctg
//
LOCUS       DATGBK010000510         1816 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_145065, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000510 DATGBK010000000
VERSION     DATGBK010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145065"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..805
                     /locus_tag="VKJ77_07310"
     CDS             <1..805
                     /locus_tag="VKJ77_07310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HMC45115.1"
                     /translation="TGAKIFRGAPYQAAGKTGTAQVYSLQGANYSHSAIAERLRDHAL
                     FIAFAPADHPTIAVALIVENGGWGAESAGPIARKVLDYYLVDRMKPGAEAAAVAAAAS
                     ATEDANAPVIGGAQSPVDAALPASVTGASPAFKPLAASDPAAASAAAAASDSAASASS
                     GAGAASSAPAASAVPVAPSMLRALEAPRVPVAPITTEARETARPATESKAPGVVNAKE
                     TIRTAEVRKAPAAPTPPSRPKEPAPTAAIPRNTGKSAIQTLTPSGGIDE"
     gene            827..>1816
                     /locus_tag="VKJ77_07315"
     CDS             827..>1816
                     /locus_tag="VKJ77_07315"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HMC45116.1"
                     /translation="MQFDKRVWLERTKRMFAGFDKPLALIVFLLLCVGIVTLYSASLD
                     VPGRVEDQLRNIMLTFGLMWILANVPPPTLMRFAVPLYTIGMALLIAVATFGLTRKGA
                     KRWLNVGVVIQPSEIMKIAMPLMLAWYFQRREGGIRWWDYIVGFVILILPVAIIAKQP
                     DLGTAVLVFAAGLFVIYFAGLSFKLIVPVLVAAVLVVASIGIFQERICQPEVNWPLMH
                     DYQKHRICTLLDPTSDPLGKGFHTIQAVIAIGSGGTFGKGWLKGTQSHLEFIPEKHTD
                     FIFAVFSEEFGLAGGLVLLFLYMALIARGLFIAANGATLFGRLLAGSLTMAFFT"
BASE COUNT          318 a          551 c          600 g          347 t
ORIGIN      
        1 tacaggtgcc aagatcttcc gcggcgcgcc ctatcaagcg gccggcaaaa ccgggacggc
       61 gcaggtctat tcgctgcaag gcgcgaatta ttcacacagc gcgatcgcgg aacgtctgcg
      121 cgatcacgcg ttgtttatcg cgttcgcgcc ggcggatcat ccgactatcg cggttgcgct
      181 gatcgtggaa aacggcggct ggggcgcgga atccgcaggc ccgatcgcgc ggaaagtgct
      241 cgattattat ctcgtcgacc ggatgaaacc gggcgcggaa gcggcggccg tggctgcagc
      301 ggcatcggca acggaagatg cgaacgcacc ggtgatcggg ggcgcgcaaa gcccggtgga
      361 cgcggcgctg cctgcttcag tgacgggtgc gtcgccagcg ttcaagccac tggcagcgtc
      421 cgatccggcg gccgccagcg cggctgccgc ggcgtctgat tcggctgcgt ccgcaagcag
      481 cggagccgga gcggcgtcga gcgcgccggc tgcatcggcc gttcctgtcg cgccgagcat
      541 gctgcgcgcg ctggaagcgc cacgcgtgcc ggtcgcgcct atcaccacgg aagcgcggga
      601 aacagcgcgc ccggcaacgg aatcgaaagc accgggcgtg gtcaacgcga aggaaacgat
      661 tcgtaccgcc gaggtccgca aggcaccggc cgcacccacg ccgccatcac gaccgaaaga
      721 accggcgccg accgccgcta tcccgcgcaa taccggcaaa agcgccatcc agacgttgac
      781 gccgtctggc ggcatcgacg agtaaaggag aatcgccatg caagcgctgc aattcgacaa
      841 gcgcgtctgg ctcgaacgca cgaagcgcat gttcgcgggc ttcgataagc cgctcgcgct
      901 gattgtgttc ctgctgctgt gcgtgggcat cgtgacgctg tacagcgcga gtctcgatgt
      961 ccctggccgc gtagaagacc agttgcgtaa catcatgctg acgttcgggc tgatgtggat
     1021 tctcgccaac gtgccaccgc ccacgctgat gcgtttcgct gtgccgctgt acaccatcgg
     1081 catggcgctg ctgattgcgg tcgccacttt cgggctgacg cgcaaaggcg cgaaacgctg
     1141 gctgaacgtg ggcgtggtga tccagccctc ggagatcatg aagatcgcga tgccgctcat
     1201 gctcgcatgg tatttccagc gtcgcgaggg cggtattcgg tggtgggatt acatcgtcgg
     1261 cttcgtgatc ctgatcctgc cggtcgcgat catcgccaag cagccagatc tgggcaccgc
     1321 cgtgctggtt ttcgcggcgg gcctcttcgt gatctatttc gcgggcttga gtttcaagct
     1381 gatcgtgccc gtgctcgtgg cggctgtgct ggtggtcgcg agtatcggca tatttcagga
     1441 gcgcatttgc cagccggaag tgaactggcc gctgatgcac gattaccaga aacatcggat
     1501 ctgtacgctg ctcgatccca cctccgatcc gctcggcaaa ggctttcaca ccattcaggc
     1561 cgtcattgcg atcggctcgg gcgggacgtt cggaaaaggc tggttaaagg gtacgcagtc
     1621 gcatctggaa ttcatccctg aaaagcatac cgacttcatt ttcgcggtgt tttcggagga
     1681 gttcgggctc gccggcgggc tggtgctgct attcctttac atggcgttga ttgcgcgagg
     1741 gctgtttatc gcggcgaacg gggcgacgct gttcggacgc ctgctggcag gatcgctgac
     1801 gatggcgttc tttact
//
LOCUS       DATGBK010000511         1695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_307142, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000511 DATGBK010000000
VERSION     DATGBK010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307142"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..444
                     /locus_tag="VKJ77_07320"
     CDS             <1..444
                     /locus_tag="VKJ77_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45117.1"
                     /translation="MGHSGAARAGVWNFTETAACEWGYAGVRVNAVAPGWIASAGMDS
                     YDERYRALLRELKHKVPLQRFGTESELAAAAVFLLSEASAFINGTVIRVDGGVPNARH
                     SWPLAASGRTLEFNGFSRYQPPAGLQELPNVNDATDKAAPSSAGE"
     gene            472..>1695
                     /locus_tag="VKJ77_07325"
     CDS             472..>1695
                     /locus_tag="VKJ77_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC45118.1"
                     /translation="MLPAADSYETLAAAFAWKVPAHYNIGVDACDKWADGSGRLALIY
                     ETREGSETRFTFDDLKALSNQFANALARAGLKRGDRVGIFLPQSPETAIAHLAIYKAG
                     YIAVPLFQLFGVDAIQYRLADSGAAALITDHTGFEKLQQVRETLPDLNATYCVDSVSR
                     DDAHSFWDSLRAEPDVFTPADTSSDDPAAIIYTSGTTGKPKGALLAHRALLGHLPGVE
                     MSQGLFPAHARLMWTPADWAWIGGLFDVLLPAWHHGIAVLARRFEKFDGPAAFDLMAR
                     HGVTHTFLPPTALKMMRSVAHPEQWRLSLRAVASGGESLGEELIAWGRAALGVTINEF
                     YGQTECNVVVSSCSTLFEPRPGAIGRSVPGHRVAIVDDEGAELPPGTPGNIAIAAPDP
                     VMFLRYWNNEAATRDK"
BASE COUNT          292 a          529 c          560 g          314 t
ORIGIN      
        1 atgggtcatt cgggcgccgc gcgcgccggc gtctggaact tcacggaaac ggccgcgtgc
       61 gaatggggtt acgccggggt gcgggtgaat gccgtggcgc cgggatggat cgcatcggca
      121 ggtatggata gttacgacga acgctatcga gcgttgctgc gcgaactcaa gcacaaggtg
      181 ccgttgcagc gctttgggac cgaatccgaa ctggccgcgg cggcggtatt tttattgtcg
      241 gaggcgtcag cgttcatcaa cgggacggtg attcgtgtcg atggcggcgt gccgaacgcg
      301 cggcattcat ggcccttggc ggcgtccggg cgtacgctgg aattcaacgg gttttcgcgc
      361 tatcagccgc ctgcggggtt gcaggaattg cccaacgtca acgatgcaac cgataaagcc
      421 gcgccatcca gcgccggcga gtgagactca aacagaaacc agggagaagc gatgcttccc
      481 gcagccgatt catatgaaac tctcgccgcg gcattcgcgt ggaaggtgcc cgcgcattac
      541 aacatcggcg tggacgcctg cgataaatgg gccgacggtt ccggccgcct cgcgcttatc
      601 tacgagaccc gcgaaggctc ggaaacgcgt tttaccttcg atgacctcaa ggcgctctcc
      661 aaccagttcg ccaacgcgct tgcccgcgcg gggcttaagc gcggcgaccg cgtggggata
      721 ttcctgccgc agtcgccgga gacggccatc gcgcatctgg ccatctacaa ggcgggttat
      781 atcgcggtgc cgctgtttca gttgttcggc gtcgatgcca tccagtaccg gctcgccgat
      841 agcggcgcag cggcgctgat caccgaccat acgggcttcg agaagctgca gcaggttcgc
      901 gagacgctgc cggacctgaa cgcgacctat tgcgtcgatt ccgtttcccg cgatgacgcg
      961 cattccttct gggattcgct gcgcgcggaa ccggacgtct tcacccccgc cgatacctcc
     1021 tccgacgacc ccgccgcgat catctacacc tccggcacga cgggaaaacc caaaggagcg
     1081 ctgcttgccc atcgggcgtt gctgggccat ttaccgggcg tcgagatgtc gcaaggcctt
     1141 ttcccggcgc acgcccggct gatgtggacg cccgccgact gggcgtggat tggaggcctg
     1201 ttcgatgtct tgctgcccgc ctggcatcac ggcatcgcgg tgctcgcgcg gcgcttcgaa
     1261 aaattcgatg gccccgccgc cttcgatcta atggcgcgtc acggcgtcac gcacacgttc
     1321 ctgccgccga ccgcgctcaa gatgatgcgt tcggtcgcgc atcccgagca gtggcggttg
     1381 tcgttgcgag cggtcgcgag cggcggggaa tcgctgggcg aggagctgat cgcgtggggc
     1441 cgggcagcgc tcggtgtgac gatcaacgag ttttacgggc agaccgaatg caacgtggtg
     1501 gtgtcgtcgt gttctacgtt gttcgagccg cgcccggggg caatcggacg cagcgtgccg
     1561 ggacatcgcg tggcaatcgt cgacgatgaa ggcgcagagc ttcctcccgg cacgcccggc
     1621 aatattgcga ttgccgcgcc cgatccggtc atgttcctgc gctactggaa caacgaagcg
     1681 gccacgcgcg ataaa
//
LOCUS       DATGBK010000512         1569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_307154, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000512 DATGBK010000000
VERSION     DATGBK010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307154"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..1072
                     /locus_tag="VKJ77_07330"
     CDS             155..1072
                     /locus_tag="VKJ77_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013235128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45119.1"
                     /translation="MLAYVLRRLGLAIAVALTVSIVSFALLHVSGDLATSIAGPEASA
                     AQVEALRVQYGLDRPITSQYIDWLWHAAHLDFGRSFFFQSSVMDLIAERLPITLKLGG
                     IALAIAVFVAIPLGVLAALYRDSWVDRLALLIAVIGQAMPSFWFGLTLILVFSVGLKW
                     LPVAGNTSWQNFVLPAIALGYYATPAMMRLTRAGMLDVLGADYIRTARAKGLSPARVV
                     VKHALRNALIPVVALAAVELGFMLGGSVVIESVFSLQGLGQLAWDAIARNDFPVVQAV
                     VLIIAMFYIALTFVADVANAALDPRMRTR"
     gene            1082..>1569
                     /locus_tag="VKJ77_07335"
     CDS             1082..>1569
                     /locus_tag="VKJ77_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006027034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45120.1"
                     /translation="MTSDTRILPALRLDAATVPLWRRMLRRVLGQHGLTLGAILLGLI
                     LLAAVFAPLLAPHDPYGQDLSRRLVPPAWYTRGSWQFMLGTDKLGRDYLSRLLYGARV
                     SLLIGVAAATISGLIGTTLGVLAGYFGGRVDAVISYVITTRLAMPVVLVALAMSSLIG
                     GSL"
BASE COUNT          224 a          509 c          489 g          347 t
ORIGIN      
        1 ctacgcgttc acgagcgacc tgaatttcaa ggcgtacccg gacgaactgc cgcgcttcta
       61 cgaagctagc tggaagtagc acgccgcaac gttaaccctg caggctacag cggcggtagc
      121 gtttaacgcc gctttcatct accaggaagc gctcatgctc gcctatgttc ttcgccgtct
      181 cggactcgcg attgcggtcg cactgaccgt gtcgatcgtc agtttcgcgc tgctgcatgt
      241 ctcgggcgat ctcgcgacgt cgattgcagg cccggaagcg tccgccgccc aggtcgaagc
      301 actgcgggtg caatacggac tcgaccggcc gatcacgtcg caatacatcg actggctttg
      361 gcatgcggct cacctcgact tcgggcgttc gttcttcttc cagtcatcgg tcatggacct
      421 gatcgccgag cgtctgccga tcacgctgaa gcttgggggc attgcgctgg ctatcgccgt
      481 gttcgtggcg atcccgcttg gcgtgctggc cgcactgtat cgcgattcat gggtcgaccg
      541 gctcgcgttg ctgatcgccg tgatcgggca agccatgccg agtttctggt tcggcctcac
      601 gctgatcctg gtgttctcgg tcggactcaa atggttgccc gtcgcgggga atacgagctg
      661 gcagaacttc gtgctgccgg ccatcgcact ggggtactac gccacgcccg cgatgatgcg
      721 gctcacacgc gccggcatgc tcgacgtact cggcgccgac tatatccgca cggcgcgcgc
      781 caaaggcctg agtccggcac gcgtggtcgt caagcatgcg ttgcgcaacg cgctgatccc
      841 ggtcgttgca ctggctgcgg tcgaactggg tttcatgctc ggcggctcag tggtgatcga
      901 atccgtgttc tcgttgcagg ggctcggcca gctcgcgtgg gacgcgattg ctcgcaacga
      961 ttttccggtc gtgcaagccg tcgtgctgat catcgccatg ttttatatcg cgctgacttt
     1021 cgtggccgat gtcgccaacg ccgcgctcga tccacgcatg cgtacgcgct aggagagcac
     1081 catgacttcg gatacccgca tcctgcccgc gctgcgcctt gacgcggcaa ccgtgccgct
     1141 atggcggcgc atgcttcgcc gcgtactcgg ccagcatggc ctgacgcttg gcgcgatttt
     1201 gcttggcctg atcctcctgg cagcggtctt cgcgccgttg ctggcgcctc acgatcccta
     1261 cgggcaagac ctctcgcgcc gtctcgtgcc gcccgcctgg tacacccgtg gcagttggca
     1321 attcatgctt ggtaccgaca agctcgggcg cgactatctc agccggctgc tctacggcgc
     1381 gcgggtgtcg ttgttgatcg gtgtggcggc agcgacaatc tccgggttga tcggcacgac
     1441 ccttggcgta ctggccgggt atttcggcgg ccgggtcgat gccgttatca gctacgtcat
     1501 cactacccgt ctcgcgatgc cggtcgtgct cgtggcgctg gccatgtcgt cgctgatcgg
     1561 cggctcgct
//
LOCUS       DATGBK010000513         2094 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_191794, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000513 DATGBK010000000
VERSION     DATGBK010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191794"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1375)
                     /locus_tag="VKJ77_07340"
     CDS             complement(<1..1375)
                     /locus_tag="VKJ77_07340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HMC45121.1"
                     /translation="MGKGISMLRPGNEQGEPDTTVFTPFSSRPIPRALMRSLACWLAL
                     QTALAVPLASLASAAAANGPAAIAPASAPVSATASGTMSATATGVGAVPPPGPALPFN
                     RATIEQPQLAVPVPAFAQAASGALGGSAAPAVRTLASRTPTTAEPGTLVPGGRRQTLT
                     FSDLGALDPLQLRGTDGQNGVPFSVRSDEVVTGAVLHLIYSYSPSLLPSISQLKVLVN
                     GEVAATLPVPRDQAGILVARDVSIDPRFITEFNHLNVQLIGHYTQQCEDPSNSTLWAT
                     VSNASSLDLTYASLESKPDLASLPVPFFDRRDVRRLELPFVFAQKPSAATLEAAGAVA
                     SWFGSLSGYRGAVFPAQIDNVPLSGNAVVFATSDQHPAGVKIPDITGPTIAVMDRDTP
                     SRGRLLLVMGRNDAELKTAAKALGIGQNTLSGTTATITQLNDFAPRKPYDAPNWLPTD
                     RPVRFGEL"
     gene            complement(1377..>2094)
                     /locus_tag="VKJ77_07345"
     CDS             complement(1377..>2094)
                     /locus_tag="VKJ77_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HMC45122.1"
                     /translation="FNVTAKGGQISKDYFDYAISRPYLFLLVLNLLGFIAGIVNIYLH
                     WDVSSEVNTVLLNLAWTTYNMLILGASVAAASERRQVRTTHRVEMKMPVMLKFSTGRT
                     LACETMDYSEGGVGVKLPGDLEVPLHEKVTVSLFRGDEEYAFPATVGFTAVGRVGLRF
                     SALTREQEFEFVKTTFARADAWTNWSEGRTPDAPLRGLRHVLVVGMGGIGALFEHLFT
                     DARNWLTTRSPDVKKLKTKD"
BASE COUNT          369 a          653 c          702 g          370 t
ORIGIN      
        1 ccagttcgcc gaaacgcacc ggcctgtcgg tcggcagcca gttcggcgcg tcgtacggtt
       61 tgcgcggggc gaagtcgttc agttgcgtga tcgtcgcggt cgtgccggac aacgtgttct
      121 ggccgatgcc aagcgccttc gcggcggtct tcagctcggc gtcgttgcgg cccatcacga
      181 gcagcagacg gccacgcgaa ggcgtatcgc gatccatcac cgcgatggtc gggccggtaa
      241 tgtcggggat cttcacgccg gccgggtgct ggtcgctggt ggcgaacacc acggcgttgc
      301 cggacagcgg cacgttgtcg atctgagccg gaaacacagc gccgcgatac ccgctaagcg
      361 agccgaacca cgacgctacc gcgcccgctg cttcgagcgt ggccgcgctt ggtttttgcg
      421 cgaacacgaa cggcagttcg aggcggcgaa cgtcgcggcg atcgaagaaa ggcacgggca
      481 acgaggccag gtcaggcttg ctttcaagcg atgcatacgt gaggtcgagc gagctcgcgt
      541 tgctgacggt cgcccacagc gtggagttcg acgggtcctc gcattgctgc gtatagtggc
      601 cgatcaactg cacgttcagg tgattgaatt cagtgatgaa gcgcgggtcg atggacacgt
      661 cgcgcgcgac gagaatgccg gcctggtcgc gcggcacggg cagcgtggcg gcgacttcgc
      721 cgttgaccag aaccttgagt tgcgagatcg acggcagcag cgaaggcgaa tagctgtaga
      781 tcaggtgcag caccgcgccg gtcacgactt cgtcgctacg gaccgagaac ggcacgccgt
      841 tctggccgtc cgtgccgcgc agttgcagtg gatcgagcgc accaaggtcg gagaacgtaa
      901 gcgtctggcg gcgcccgccg ggtaccagcg tgccgggctc ggccgtggtc ggcgtcctgg
      961 aggcgagcgt gcgcacggcc ggcgcggctg atcctcccaa tgctcccgag gccgcttgtg
     1021 cgaacgccgg cacgggcacg gcgagctgcg gttgctcgat ggtcgcccgg ttgaacggca
     1081 gtgctgggcc tggaggcggt acggcgccca cgccagtcgc ggtcgcgctc atggtcccgc
     1141 tcgccgtcgc gctgaccgga gcgcttgccg gtgcaatagc agccggtcca ttagccgccg
     1201 cggcgcttgc cagcgacgcc agcggcacgg ccagtgccgt ttgcaacgca agccagcaag
     1261 cgaggctgcg catcagggcg cggggaatgg ggcgggagct gaacggagtg aaaaccgttg
     1321 tgtccggttc gccttgttca ttacccgggc gcagcatcga aattccctta cccatgtcag
     1381 tctttggtct tcagtttttt aacgtcgggt gaacgggttg tcagccagtt ccgcgcgtcg
     1441 gtgaaaagat gttcgaacaa cgcgccgata ccgcccatgc ccactaccag cacgtgccgc
     1501 aagccgcgca acggcgcgtc cggggtgcgt ccttcagacc agttcgtcca cgcgtcggcg
     1561 cgggcgaagg tggtcttcac gaactcgaat tcctgctcgc gcgtgagcgc ggaaaagcgc
     1621 aatccaacgc gcccgacggc ggtaaaaccg acggtcgccg ggaacgcata ttcctcatcg
     1681 ccgcgaaata gcgagacggt gactttctcg tgcagcggca cttccaggtc gcctggcaac
     1741 ttcacgccca cgccgccttc cgagtagtcc atggtttcgc aggcgagggt gcggccagtc
     1801 gaaaacttga gcatcacggg catcttcatt tctacccgat gcgtcgtgcg cacttgacgc
     1861 cgttcgcttg cagccgcgac gctcgcgccg aggatcagca tgttgtaggt ggtccatgcg
     1921 aggttcagca agaccgtgtt cacttcgctg ctgacatccc agtgcaggta gatgttcacg
     1981 attcccgcga taaacccgag caggttcagc accagcagga acagataagg gcgcgagatc
     2041 gcgtagtcga aataatcctt cgagatctgg ccgcccttcg ccgtcacgtt gaac
//
LOCUS       DATGBK010000514         1779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_214649, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000514 DATGBK010000000
VERSION     DATGBK010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214649"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..428)
                     /locus_tag="VKJ77_07350"
     CDS             complement(<1..428)
                     /locus_tag="VKJ77_07350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45123.1"
                     /translation="MGLQLAIGFAVPVIALILVSGAVFAGFARLSAAKQDLLDKTALR
                     AHVRDIETQMARTRYAARGYVISLSKKELATVKENAAVADADIAYAQQHAGLVADFKE
                     KIQAVSDVQAAMLAHTAELTATATADDDALIEGYRSKSAGS"
     gene            618..1190
                     /gene="def"
                     /locus_tag="VKJ77_07355"
     CDS             618..1190
                     /gene="def"
                     /locus_tag="VKJ77_07355"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: protein motif:HMM:NF001159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HMC45124.1"
                     /translation="MPYLRTILTDNHPTLRKVAKRVDPAEISDPIFQQLIDDMFHTQY
                     EAPGIGLAAPQIGVSKRVFTVDLQDDEDEHGPLVFVNPKFTLTEGEVDAVEGCLSVPG
                     YVGNVTRFEHVVCNALDRNGKKMQIDAHGWFARCLQHEMDHLDGILYTDKARDVRLAQ
                     TEEELEAAEAIHAEGAANESINAAVALTPN"
     gene            1259..>1779
                     /locus_tag="VKJ77_07360"
     CDS             1259..>1779
                     /locus_tag="VKJ77_07360"
                     /inference="COORDINATES: protein motif:HMM:NF012760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HMC45125.1"
                     /translation="MVAVVTQPDRPSGRGHKLTPTPVKSAALALGLTVYEPLKLKVFA
                     DELRALDADVFAVASYGRILPQAVLDLPKTGISFNVHPSLLPLYRGATPLQTAIRDGC
                     TETGVTIMAMDAGMDTGDILVQERTPLQPKETYGELHDRLALLGAQLLGDAIARLLNG
                     TLERTPQSASGTA"
BASE COUNT          352 a          529 c          534 g          364 t
ORIGIN      
        1 gagcccgcgc tcttggaacg atagccttca atgagcgcat cgtcgtcggc ggtcgccgtg
       61 gcggtcaatt ctgccgtatg ggcgagcatt gccgcctgca cgtcgctgac ggcttgtatt
      121 ttttctttga aatccgcaac cagaccggca tgctgctgtg cgtatgcgat gtccgcgtcg
      181 gcgaccgccg cattttcctt gacggtagcc agttcttttt tgctcagcga gatgacgtag
      241 ccgcgcgcgg cgtagcgcgt gcgcgccatt tgcgtttcga tatcgcgaac gtgggcccgc
      301 agggccgtct tgtcgagcaa atcttgctta gcggcgctca ggcgcgcgaa gccggcaaaa
      361 accgcccccg agacgagaat aagtgcaata accggcactg cgaagccgat cgcgagctga
      421 agacccatac gaaatttcat gttctaacca ccgagtaggc gcgcaaggct tgcccggcat
      481 gcgtccaccg gagtgccacc cttgccgttt atcttcggcc cttttgccgt cgtgcttaac
      541 cgagcgctta cacttgggcc gtgatctgcg tcacaggaaa ccggaatttg gcgcgaggag
      601 ttaagataga cgtagctatg ccgtacctcc gcacgatcct cacggataac cacccgacct
      661 tgcgcaaggt cgctaagcgc gttgatccgg cggagatttc cgacccgatc ttccagcagc
      721 ttatcgacga catgtttcat acgcagtacg aggcacccgg aattggcctg gcagcgccgc
      781 agatcggcgt ttccaaacgc gtctttaccg tcgacctcca ggacgatgaa gacgaacacg
      841 gaccgctggt ttttgtcaat ccgaaattca ccctgaccga gggtgaggtc gacgcggttg
      901 aaggctgtct gtccgtgccc ggatacgtcg ggaacgtgac gcgtttcgag cacgtcgtgt
      961 gcaacgcact cgatcgcaac ggcaagaaaa tgcagatcga cgcgcacggc tggttcgcgc
     1021 gctgtttgca gcacgagatg gatcatctcg acggtattct ctacaccgat aaagcgcgcg
     1081 acgtgcggtt ggcgcaaacc gaagaagaac tcgaagcggc cgaagcgatt cacgccgaag
     1141 gcgccgccaa cgaaagcatc aatgccgccg tcgcgctgac gccgaactga aaagcgtttt
     1201 tttcggaacg agcgattttg ccgttccgag tctgcacgta ctcgctgcgg cgaccgaagt
     1261 ggtcgccgtt gttacgcaac ccgatcgccc gtcgggccgc ggtcacaagc tcacgccgac
     1321 gccggtgaag agtgctgcgc ttgcactagg tttgacggtg tacgagccgc tcaagctcaa
     1381 agtatttgct gacgagttgc gcgcgcttga tgccgatgtg ttcgccgttg cgtcttacgg
     1441 ccggatcttg ccgcaagctg tgctcgatct tccgaagacc gggatctcgt ttaacgtgca
     1501 tcccagtctg ctgccgctgt atcgcggggc tacgccattg cagacggcga tccgcgatgg
     1561 atgcacggaa accggcgtta cgatcatggc gatggatgcg ggtatggata cgggtgacat
     1621 tctcgttcaa gaacgcacgc cgctccagcc gaaagaaacg tatggcgaac tgcatgaccg
     1681 gctcgcactc ctgggggcgc agctcctggg tgatgcgatt gcgcggcttc tcaatggaac
     1741 gctggaacgg acgccgcaat cggcgtccgg taccgcgca
//
LOCUS       DATGBK010000515         2409 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_5922, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000515 DATGBK010000000
VERSION     DATGBK010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2409
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5922"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..1059)
                     /locus_tag="VKJ77_07365"
     CDS             complement(40..1059)
                     /locus_tag="VKJ77_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC45126.1"
                     /translation="MTDSFRTADEISISDVAQKAGVSVATVSRVLNGHTNVREPTRDK
                     VLAAVAASGYRINELARNLRTAESRMLLTLVPDFGNPFYAAIVRGIDSVARQNGYFML
                     LCDTGADPGRERSYFDLLRGRRADGAICLDPAAIQQALVEEAATLPWVACCEFDPAAG
                     VPYVGIDNYQAAGDAVRHLLSRGHRKIALINSGHGYLYSRQRAEGYRDALSAAGIDAD
                     PAWQVDLDTLDYAAGESAARTLTRLRRNRPTAVFAVSDTLAIGVINGLRGVGQRVPDD
                     MAVMGFDDIAVAAQIDPPLTTVAQPMRELGETAARLLLKRLREPNAHVPGVLLPHKLM
                     IRRSA"
     gene            1263..1967
                     /locus_tag="VKJ77_07370"
     CDS             1263..1967
                     /locus_tag="VKJ77_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006157003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HMC45127.1"
                     /translation="MPGYLTKQQNIPVSGVEDLIIRSLLDLQQFSDPNGDAERIGISS
                     AMWPLFGMLWPSGAHLAARLALRPVLLDERILEIGCGLALASLVGHRRGANVTASDCH
                     PLTADFLNENLRLNHLPPMKYRHGNWSIPELEDSLEDQAGRRIVDGRFDLIMGSDLLY
                     ERDANATLAAFIGLHASPVAEVWIVDPDRGNRAAFNRQMGDRGFQMREERLDKIAFDD
                     TAAYKGRLLIYRFHDA"
     gene            complement(1999..>2409)
                     /locus_tag="VKJ77_07375"
     CDS             complement(1999..>2409)
                     /locus_tag="VKJ77_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009771638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein DipZ"
                     /protein_id="HMC45128.1"
                     /translation="ENFSGRGGESHDRVHTYAAPDQLALNEWGLAGVWNVGAEQATLA
                     ASTGTIVYRFHARDLHLVLGPGKDNKPVRFRVSIDGAAPGNAHGSDVMADGTGTVTEQ
                     RLYQLVRQSGDVKDHTFTIEFLEPGVEAYAFTFG"
BASE COUNT          466 a          749 c          729 g          465 t
ORIGIN      
        1 gtttttcgat gttatcgaag cggacggcca ggctcatgat cacgcgctcc ttcgtatcat
       61 cagcttgtgc gggagcagca caccgggcac atgcgcgttt ggttcacgca ggcgtttgag
      121 cagcaggcgc gcggcggttt cgccgagttc gcgcatgggt tgggcgaccg tggtgagcgg
      181 tggatcgatt tgcgcggcga cggcgatatc gtcgaaaccc atcacggcca tgtcgtcggg
      241 aacacgctga ccaacgccgc gcaagccgtt gatcaccccg atggcgaggg tgtcggagac
      301 ggcaaacact gcagtcggtc ggttgcgccg caggcgtgtc agcgtgcgcg cggcgctttc
      361 gccggctgcg tagtccaggg tatcgaggtc gacttgccag gcgggatcgg catcaatccc
      421 tgcagcgctt agtgcatcgc gatagccctc cgcgcgctgg cggctatata aataaccgtg
      481 gcccgaatta atcagcgcga ttttccgatg gcctcggctg agcaagtggc gcactgcatc
      541 gccggcggct tgatagttgt cgatacctac gtacggcacg cctgctgcgg gatcgaactc
      601 gcaacacgct acccagggca gcgtggccgc ctcttcgact agcgcctgct gaatggctgc
      661 aggatcgaga cagatggcgc cgtcggcgcg gcggcctcgc agcaggtcga agtaactgcg
      721 ttcgcggcca gggtcggcgc ctgtatcgca gagcagcatg aaatagccgt tttgacgggc
      781 gacgctgtcg atgccgcgaa cgatagcggc gtagaacggg ttgccgaagt cggggaccaa
      841 ggtaagcagc atgcggcttt ccgcagtgcg caaattgcgg gcgagttcgt tgattcggta
      901 cccgctggcg gcaaccgctg cgagcacttt gtcgcgggtg ggttcgcgta cgttggtgtg
      961 gccgttgagg acgcgggaca cggtcgcaac tgatacgccc gccttctgtg caacatcgga
     1021 gattgagatt tcatcggcgg tgcgaaacga atctgtcatt tgtttcaact cgcagcccgc
     1081 aggatgtaat ggattacatt attggagcga gaggggcggg acgcgatagg gacaaacacg
     1141 aagaaaggtc gttcgcacga tcacctgagc agcaggctcg cggcacagcc cggccgaaga
     1201 ctcccaaaca agcgcatact atgttcccat ctccctgcgc ggctccactt cgcgccctcc
     1261 tgatgcccgg ttacctgacc aagcaacaaa acatccccgt ctcgggcgtc gaagacctga
     1321 tcattcgctc gctgctagac ctccagcaat tctccgaccc caatggcgac gccgaacgaa
     1381 tcggcatctc ttccgccatg tggccgctgt tcggcatgct gtggccatcc ggcgcacacc
     1441 tcgctgcacg cctcgcccta cggccagtat tgttggacga acgaattctc gagatcggtt
     1501 gcggactggc cctggccagt ctcgttggac accgtcgtgg cgcaaacgtg actgccagcg
     1561 attgccatcc actgaccgca gacttcctga acgaaaacct gcgcctgaac cacttgccgc
     1621 ccatgaaata ccggcacggc aactggtcca tccccgagct ggaagatagc cttgaagatc
     1681 aagcaggacg ccgtatcgtc gatggtcgct tcgacctgat catgggcagc gatctgctct
     1741 acgaacgcga tgccaacgcc acgttagccg cgttcatcgg actgcatgca tcgccggtgg
     1801 ccgaggtctg gattgtcgac cccgaccggg gcaaccgcgc cgcgttcaac cggcaaatgg
     1861 gcgaccgcgg cttccagatg cgcgaggaac ggctggataa aatcgccttc gacgataccg
     1921 ccgcttataa aggccgcctg ctgatctatc gtttccacga cgcataacgt ggcgcgctat
     1981 gcgtcgaccg ttcgccgctc aaccaaacgt gaacgcgtag gcctcgacac ctggttccag
     2041 aaattcaatg gtgaaggtgt gatccttcac atcgcccgac tggcgtacga gttgatataa
     2101 gcgctgctcc gtgaccgtgc cggtgccatc ggccatgaca tcggacccgt gcgcattgcc
     2161 gggcgcagcg ccgtcgatgc tgacgcgaaa cctcaccggc ttgttgtcct ttccaggtcc
     2221 cagcacgaga tgcaagtcac gcgcatggaa tcgataaacg atggttcccg tcgatgccgc
     2281 cagcgtcgct tgctcggctc ccacgttcca tacgcccgcc agaccccatt cattgagcgc
     2341 aagttgatcc ggcgcggcat acgtgtgaac ccggtcatgc gattcgccgc cccgaccgct
     2401 aaagttctc
//
LOCUS       DATGBK010000516         3113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_29788, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000516 DATGBK010000000
VERSION     DATGBK010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3113
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29788"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            400..1491
                     /gene="potA"
                     /locus_tag="VKJ77_07380"
                     /pseudo
     CDS             400..1491
                     /gene="potA"
                     /locus_tag="VKJ77_07380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010115150.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015417 - ABC-type polyamine transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter ATP-binding protein"
     gene            1488..2411
                     /locus_tag="VKJ77_07385"
     CDS             1488..2411
                     /locus_tag="VKJ77_07385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC45129.1"
                     /translation="MKTPHLPSLLKQRFGLTGRTAVIFGPYLWLVLLFLVPFLLVVKI
                     SFSDSRLGIPPYTELTAIKDGVLSIALDFSHYAFLVTDSLYFATYMNSLLVAGVSTLL
                     CLLIGYPMAYYIARSNPATRNLLMMAVMLPFWTSFLIRVYAWIGILKNNGLLNNFLMW
                     TGIIHSPIELYHTNIAVYIGMVYSYLPFLVMPLYAHLVKMDLTLLEAAYDLGAKPWKA
                     FLQITLPLSKNGVIAGCLLVFIPAVGEYVIPELLGGADTLMIGRVMWNEFFDNADWPM
                     ASAVTCAMVLLLLVPMALFQYYQAKQREDRR"
     gene            2411..3113
                     /locus_tag="VKJ77_07390"
                     /pseudo
     CDS             2411..3113
                     /locus_tag="VKJ77_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011884921.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
BASE COUNT          571 a          838 c          993 g          711 t
ORIGIN      
        1 agacgtgatc aagacgctgt tcctgctcaa gccgttgccg ccggaaatcc agcgtttgca
       61 aacgcggctc tggacggaac tgaagtccgg acgctgatcc tggttccggt aaagttgcga
      121 agcttgccaa ttgcatcagg cagtcgataa acgcaaagcc cctggtcctc cgggggcttt
      181 gttcgtggcc ggcgattttg ccggtagccg cgtcgaaaga ataaaggtaa aagtgctgct
      241 ggaaaaagca gcacgaacgc gcgtagcgca ggagccgggc agcagatcat gagtgagcag
      301 cagtcgagcg cagtgcccgc cggaccaggc aatcaaggta gtccgggcgg tcccaatggc
      361 cgcaggccgg aaccgggttt gcgggccccg gactgggcgg ccgagaattt cgtgcggatc
      421 gtcgatgtcg tcaagaaatt cgacgaaacc gttgcggtga aaggcgtgag cctgtcggtg
      481 aaaaaaggcg agttgttcgc gctgctcggc agttccggct gcggcaagtc caccttgctg
      541 cgcatgctcg cggggctgga gtcggtcacg tcggggcaga tcgtgatcga tggcgaggat
      601 ctcgcgagca tgccgccgta tcgacggccg gtgaacatga tgttccagtc gtatgcgctg
      661 tttccgcata tgacggtgga gtcgaacgtg gcgttcgggc tcaagcagga gggcgtgcgc
      721 ggcgcggaac tcaaggagcg cgtgcacgcg acgctcgacc tcgtgcagat ggcgaagtat
      781 gcgcagcgca agccgcacca gttgtcgggc ggccagcagc agcgcgtggc gctggcccgc
      841 agcctggtca agcgtccgaa gctgttgctg ctcgacgagc ccatgtccgc gctcgacaaa
      901 cagattcgcc agcgcacgca gatcgagctg gtgaatatcc tcgataaggt cggcgtgacc
      961 tgcatgatgg tcacgcacga tcaggaggaa gcgatgacca tggccggccg gatcgcggtc
     1021 atgagcgaag gcgagatcgt gcagatcggc acgccgcacg aggtctacga atatccgaac
     1081 agccggttca ccgctgaatt catcggctcg acgaatctgt tcgacggcat cgtggtggaa
     1141 gacgaaccgg atcacgtgtt cgtggagacg acggagttgc cgtcgcggct gtatgtgaat
     1201 catggcatca cgggtccgct tggtatgccg gtcaccatct cggtcaggcc cgagcgcatt
     1261 gcgttgacgc gtaagccgcc gcccgacggt tcgtataact ggggccgcgg gaccgtggcg
     1321 aacattgcgt acatgggcgg ctacacgctg tatcacgtga agctggacag cggcaaagtg
     1381 gtcgtggcga acttgtcgag cctcgcgctc ggacagatcg attcgcctac ctgggacgac
     1441 gaagtcttcg tgcgctggac agcgtcggca ggcgtggtgc ttaccgcatg aaaacgccgc
     1501 atttaccgag cttactcaag caacgcttcg gcctgacggg caggacggcg gttatcttcg
     1561 ggccgtattt gtggctcgtg ctgctgttcc tcgtgccgtt cctgctggtc gtcaaaatca
     1621 gtttctccga ttcgcgtctc ggaattccgc cctatacgga attgacggcg ataaaagacg
     1681 gcgtgctgag tatcgcgctc gatttttcgc attacgcgtt tctcgtgacg gacagcctgt
     1741 acttcgcgac ctacatgaat tcgctgttgg tggcgggggt gtcgacgctg ctgtgcctgc
     1801 tgatcggtta tccgatggcg tattacatcg cgcgttcaaa tccggcgacc cgcaatctgc
     1861 tgatgatggc cgtcatgctg ccgttctgga cgtcattcct gattcgcgtg tatgcgtgga
     1921 tcgggatcct gaagaacaac ggcttgctga acaacttcct gatgtggacc gggattattc
     1981 attcgcctat cgagctgtat cacacgaata tcgcggttta tatcggcatg gtgtattcgt
     2041 atttgccgtt tctcgtgatg ccgctttacg cccatctggt gaagatggat ctcaccttgc
     2101 tcgaagccgc ttacgatctt ggcgcgaaac cgtggaaggc gtttttgcag atcacgctgc
     2161 cgttgtcgaa gaacggagtt atcgcgggct gcttgctggt gttcattcct gcggtgggcg
     2221 aatacgtgat tccggaattg ctgggcggcg cggataccct gatgatcggc cgcgtgatgt
     2281 ggaatgaatt cttcgataac gccgactggc cgatggcttc cgccgtcacc tgcgccatgg
     2341 tgttgttgct gctcgttccc atggcgctgt tccagtatta ccaggcaaag caacgggagg
     2401 acaggcgatg atcgaaccca gtcgctcgct ccggttcacg tttctcggtc tcggatttct
     2461 gtttctctat attccgatcg tgagtctggt ggtgtactcg tttaacgagt cgcagctcgt
     2521 gaccgtgtgg acgcaatttt ctctgaagtg gtacgcggcg ttattacacg acgacgaact
     2581 catcaacgcc gcgtggttat cgatccgaat tgccgtgttc accgcgtgcg cgtccgtggt
     2641 gattgggact tgggcgggat atgtgctcgc gcgcatgggg cggtttcgcg gcttcacgct
     2701 atatgccggc atgatcaacg cgccgctcgt gatacccgaa gtgatccagg ggatttcact
     2761 gttgctgctg tttgtggaaa tggccaaagt attcggctgg ccggcagggc gcggcatttt
     2821 tacgatctgg atcggccacg tgatgctgtg tatttcctac gtcgcgatca tcgtggaatc
     2881 gcgggtcagg gaattgaatc catcgattga agaagcgcac tcgatttggg cgcgacacca
     2941 ttgcgggtgt ttttctcgat taccctgccg ctgatatcgc aggcgctggt ggcagggtgg
     3001 ctgctgtcgt tcacgctgtc gatcgatgac ctcgtgttat ccgcgttctt gtcgggaccg
     3061 ggatccacta cgctgccgct tattgtgttc tcgcgcgtcc ggctcggctt gaa
//
LOCUS       DATGBK010000517         2113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_307177, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000517 DATGBK010000000
VERSION     DATGBK010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307177"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..541)
                     /locus_tag="VKJ77_07395"
                     /pseudo
     CDS             complement(1..541)
                     /locus_tag="VKJ77_07395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589296.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(619..870)
                     /locus_tag="VKJ77_07400"
     CDS             complement(619..870)
                     /locus_tag="VKJ77_07400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HMC45130.1"
                     /translation="MTETEILERIRAIFKENFAIEPDRVTPQAHLYEDLDLDSIDAVD
                     LAIKLQEMTGRRIKPEEFKSVRTVGDVIGAVESLLAEQG"
     gene            complement(867..1172)
                     /locus_tag="VKJ77_07405"
     CDS             complement(867..1172)
                     /locus_tag="VKJ77_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HMC45131.1"
                     /translation="MDSLKLEIKQLLIDALDLEDLTPADIDDDAPLFETDGIGLDSID
                     ALEIGIVLRKHYQLTIAANDERTREHFRSISTLAALVASQRGALSAANDIGEKGSKS"
     gene            complement(1147..1968)
                     /locus_tag="VKJ77_07410"
     CDS             complement(1147..1968)
                     /locus_tag="VKJ77_07410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HMC45132.1"
                     /translation="MKARLNHGWRLVATGMSFVVFGVCGLLFSVLVFPLAWLWPHRAS
                     RQRMVTTIIHWFFRALVAFLQWVGVMELDVAGAAALRDSGPVVVVANHPTYLDVVVLL
                     ALTPSACCVVKNAHWGNPCFWGIVRAAEYVSNVDPIELVEASARQIAAGYTMIIFPEG
                     TRSPAPNQLHAFSRGFAHIALKAATPILPVLMDCDPPAFTKQMRWYDVPSRAFRIRVS
                     VLEPVAADQLMAHDASTDTSHESPSPALAARTLTSAIEAHINQRLFDYGFFETGN"
BASE COUNT          449 a          676 c          627 g          361 t
ORIGIN      
        1 aacgccatac gatctcgcca accagcagga cccctatcag gccatacgca atcgcgccgt
       61 tgtagagcga ccacgcagcg cgtgtccaga acaacgcggt ataggcggaa aacgcaccgt
      121 tcagcgtgaa gaacacgcac cacatttgcg tgacccggcg cgtgtatcgc accgcatacg
      181 cgcccagcgc cggattgccg atgcgcgcga atttttcgat catcgatgga ccgcgcacaa
      241 gcgtcgcgcc gaacgcgacc agcagtccga gattcaccaa cgagggatac agatgcaaca
      301 gcaattcact gccggacaat acgatccccg ccgatgcgca gcttagaagg cccgctacgc
      361 accagtcggt cgcggtaagc tggcgcagcg acgtcgcgaa cgtacccgtc ccggcccagc
      421 gctgcagcca tagcagagcg aacaacgcgg cgccgatata tcgcggctca tcccagcgcc
      481 atgcacacaa aatcattaac gggtaagcga ccttaagcgc gacttgcaga accgctcgca
      541 gccaaccaaa cggcatggct cgcttggcct cgggcgccgc ggcaccctgc ccgccggaac
      601 gtgaatgctc cgcttgcatc acccctgttc cgccagcagc gattccaccg ccccgatcac
      661 atcgccgacc gtgcgtaccg acttgaactc ttccggcttg atgcgtcgtc cggtcatttc
      721 ctgcagcttg atagcgagat cgacggcgtc gatgctatcc aggtcgaggt cctcgtacag
      781 atgcgcttgt ggcgtcacgc gatcgggctc gatcgcgaag ttctctttga agatggcgcg
      841 gatgcgctca aggatctctg tctcggtcac gatttactcc ccttttcccc gatgtcgttc
      901 gcagcgctca acgcgcctcg ctggctggcg accagcgcgg cgagcgtgct gatcgaacgg
      961 aagtgctctc gcgtgcgttc gtcgttcgcc gcaatagtca attgatagtg tttgcgcagc
     1021 acgatgccga tctcgagtgc gtcgatcgaa tcgagcccga tgccatcggt ctcgaacagc
     1081 ggcgcatcgt catcgatgtc cgcaggcgtc aggtcttcca gatcgagtgc atcgatcaga
     1141 agctgcttaa tttccagttt caaagaatcc atagtcgaac agccgctggt taatgtgcgc
     1201 ctcaatagcg ctggtcaaag tgcgcgcggc aagggccgga gaaggagact catgcgaggt
     1261 atcagtcgaa gcatcatgcg ccatgagctg gtcggccgcg acgggctcga gcacgctcac
     1321 gcggatgcgg aacgcccgcg acggcacgtc ataccagcgc atctgcttgg tgaaggccgg
     1381 cgggtcgcaa tccatcagca cgggcaggat tggcgtggct gccttgaggg cgatgtgcgc
     1441 aaaaccgcgt gagaatgcgt gcaactggtt cggcgccgga ctacgcgtgc cttccggaaa
     1501 aatgatcatg gtatagcccg cggcgatctg gcgggcgctg gcttcaacga gttcaatcgg
     1561 gtcgacgttg ctcacgtatt cagccgcccg cacgatgccc cagaaacagg gattacccca
     1621 gtgcgcgttc ttgacgacgc aacacgccga aggcgtgagc gcgagcagca ctaccacgtc
     1681 gaggtaggtt ggatggttgg ccacgacaac cacggggccg ctgtcgcgca acgcggcggc
     1741 gccggcgacg tccagttcca tcacgccaac ccactgcaaa aaagccacca gcgcccggaa
     1801 gaaccagtga atgatggtcg tgaccatacg ctgacgcgac gcgcgatgcg gccacagcca
     1861 cgcgagcgga aacaccagca ccgagaacag cagtccgcag acgccgaaca cgacgaagct
     1921 catgcctgtg gcgaccagcc gccagccgtg attaagccgc gccttcatgc cagctccaat
     1981 gccaggtatt accggcgttt tgccatgtgg cgggcgagcg cgtgtcgaga cagcgctgga
     2041 ccgcttcgct ctgcgtaagg aaagagtcaa gcacggcggg acttcgcaat gccgactccg
     2101 gtgcatgcga tat
//
LOCUS       DATGBK010000518         2885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_29805, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000518 DATGBK010000000
VERSION     DATGBK010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29805"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..174)
                     /locus_tag="VKJ77_07415"
     CDS             complement(<1..174)
                     /locus_tag="VKJ77_07415"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006405601.1"
                     /note="catalyzes the conversion of the propionic acid
                     groups of rings I and III to vinyl groups during heme
                     synthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase"
                     /protein_id="HMC45133.1"
                     /translation="MTAPTYDVQAVRTYLTGLQEQIAQTLGAFDGNEFLIDSWQRGPE
                     ERLRGGGSTRILEG"
     gene            complement(408..1697)
                     /gene="purD"
                     /locus_tag="VKJ77_07420"
     CDS             complement(408..1697)
                     /gene="purD"
                     /locus_tag="VKJ77_07420"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HMC45134.1"
                     /translation="MKLLVVGSGGREHALAWKLAQSPRVQMVYVAPGNGGTAQDERLL
                     NVDITDPAALADFAEKEQIALTVVGPEGPLAAGIVNLFRSRGLKIFGPTKEAAQLESS
                     KDFAKAFMKRHAIPTAEYETFTDIAAAHAYLDTKGAPIVIKADGLAAGKGVVVATTLE
                     EAHAAVDSMLADNKLGDAGARVVIEEFLDGEEASFIVMVDGKHVLALASSQDHKRLLD
                     GDKGPNTGGMGAYSPAPIVTPQLHARVMREIILPTVRGMEQEGIRYTGFLYAGLMIDA
                     HGNPKTLEFNCRMGDPETQPIMARLKGDFSKVVELAIAGTLATAEIEWDRRTALGVVL
                     AAHNYPDTPRKGDRINGIPAETPEAVTFHAGTTLENGKLSTSGGRVLCVVGLSDSVRG
                     AQSVVYDTINQIAFDGMQYRRDIGYRALNRKAADRQG"
     gene            complement(2294..>2885)
                     /locus_tag="VKJ77_07425"
     CDS             complement(2294..>2885)
                     /locus_tag="VKJ77_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010091139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC45135.1"
                     /translation="PRLRLSVEKAYDANMPKDNINRAIQRGVGGVDGATYEEIRYEGY
                     GIGGAAIIVDTMTDNRTRTVADVLHAFSKFGGNMGTDGSVAFMFDHVGQFLFAPGTSE
                     DKLMEAALEAGADDVVTNDDGSIEVVCPANDFQQVKDALEAAGFKAEVAEVIMKPQSE
                     VEFTGEEAAKMQKLLDALENLDDVQEVYTNAAIDEE"
BASE COUNT          496 a          918 c          838 g          633 t
ORIGIN      
        1 gccttcgaga atccgcgtgc tgccgccccc gcgcaaccgt tcttccgggc cacgctgcca
       61 ggaatcgatg aggaattcgt tgccgtcgaa cgcgccaagc gtctgcgcga tctgctcttg
      121 caaaccggtc agataagtgc ggacagcttg tacgtcgtag gttggagcgg tcatcgtgga
      181 ctgttttacg gcttgcgggg aaaggacccg gagttaggtg aaccttggtt ttgcgcaaag
      241 ttgcctggtc ccgtgcgcgt tccttctcgt tccttctaaa acgcactgcc ggacgcgatg
      301 gtccggcagt gcgttgctca atttgctgcg ttgttgcgtt tctggcgacg gttttctggt
      361 cacgttatcc ggccatgtta tccggccacg ttgccagcgg ttccgtttca gccctggcgg
      421 tctgctgctt tacgattcag tgcgcggtaa ccaatgtccc gccgatactg catgccgtcg
      481 aacgcgattt gattgatcgt atcgtagacg acagactgcg cgccacgtac cgagtccgac
      541 aaacccacga cgcacagcac gcgtccgccc gatgtgctga gcttgccgtt ttccagcgtg
      601 gtgcctgcat ggaaagtcac ggcttccggc gtctccgccg gaatgccatt gatccggtca
      661 cccttgcgcg gcgtgtccgg gtagttgtgc gcggccagca cgacgccgag cgccgtacgc
      721 cggtcccatt cgatctccgc cgtcgcaagc gtcccggcga tcgccagttc cactaccttc
      781 gagaaatcgc ccttcaagcg cgccatgatc ggttgcgttt ccgggtcacc catccggcaa
      841 ttgaattcga gcgttttcgg attgccgtgc gcgtcgatca tcaggccggc gtacaggaaa
      901 ccggtgtagc ggatgccttc ctgttccatg ccacgcaccg tcggcaggat aatttcgcgc
      961 atgacgcggg cgtgcaattg cggcgtgaca ataggcgcgg gcgaataagc gcccatgccg
     1021 ccggtgttcg ggcccttgtc gccgtcgagc aggcgcttgt gatcctgact cgacgccagt
     1081 gccagcacgt gcttaccgtc caccatcacg ataaagctgg cttcctcgcc gtccaggaat
     1141 tcctcgatca ccacgcgcgc accggcgtcg cccagtttgt tgtcggcgag catggagtcg
     1201 acggccgcgt gcgcttcttc aagcgttgtt gccacgacca cgcccttacc ggccgcgagc
     1261 ccgtcagcct tgatgacgat aggcgcgcct ttcgtgtcca gatacgcgtg ggcagcggct
     1321 atgtccgtga acgtttcgta ttccgcagtc ggaatagcgt ggcgtttcat gaacgctttc
     1381 gcgaagtcct tcgagctttc gagctgcgcg gcttccttgg tcgggccaaa aattttcagg
     1441 ccacgtgagc ggaacaggtt gacgataccc gctgcgagcg ggccttcagg gccgaccacg
     1501 gtcagcgcaa tctgctcttt ctcggcgaaa tcggcgagtg cggcaggatc ggtgatgtcg
     1561 acattgagca gacgctcgtc ctgagccgtg ccgccgttac ccggcgcgac ataaaccatt
     1621 tgcacgcgcg gcgactgcgc gagtttccaa gcgagcgcat gttcgcgacc gccggaaccg
     1681 acgacgagta acttcattta aaacctcgaa gatcttaaga aattcatggc ggcaggaggg
     1741 cagaccgggt cgaatcgatt tttaccaatt cgagccattt aaaccggtct gccgcgcctg
     1801 attcgcggat attgctttgc cgtgatccgg attttgccgg acatctgcca aaccccggcg
     1861 ggggcatttg acgcggggaa gcggttcgcg ccatcacgcg gctgcgtcac tcgacttccc
     1921 ggcggtcata cgcggcttcc ggccaagttc ggcccacctc gacaactata tctagcccgt
     1981 atttcaggcg catatttcgg aggacatgcc cggcgcggtc tcccggccgg tctctcacat
     2041 aacgcaccag ccggcgggtt tattcacccg tggccaacgt attcgcccgt gcactcgtcc
     2101 gggctctgct gctcaaacaa atgactggaa cacgtccgct ataaatgcac caattgcacc
     2161 aatcgagcca gaaacgggca ccggtgtgtc cgacgtcgcg ctggcacatc ccagccgtgc
     2221 gggcgttcag gcaaacgggg ccgacgcggc tcgttggccc gtcggctcac ccgctggttc
     2281 atttacccgg caatcattct tcgtcgatgg ccgcgttggt gtacacctct tgcacgtcgt
     2341 ccagattttc cagcgcgtcc agcaatttct gcattttcgc cgcttcctcg ccagtgaact
     2401 cgacttcgga ctgcggtttc atgatgactt ccgccacttc ggccttgaaa cccgcggctt
     2461 ccagcgcatc tttcacctgc tggaaatcgt tggccgggca aaccacttca atgctgccgt
     2521 cgtcattcgt gaccacgtcg tccgcgcctg cttcgagcgc cgcttccatc aacttgtctt
     2581 cggacgtgcc cggagcaaac aggaactggc cgacgtgatc gaacatgaac gccaccgagc
     2641 cgtccgtgcc catgttgccg ccgaacttcg agaacgcgtg gaggacgtcc gcaacggttc
     2701 gggtacggtt gtccgtcatg gtgtccacga tgatcgccgc accgccgata ccgtagcctt
     2761 cgtagcgaat ttcttcatac gtcgcgccgt cgacaccacc cacgccgcgc tggatcgcgc
     2821 ggttgatgtt gtccttgggc atgttggcgt cgtaggcctt ttcgacggag agccgcaggc
     2881 gcggg
//
LOCUS       DATGBK010000519         1604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_307185, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000519 DATGBK010000000
VERSION     DATGBK010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307185"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..770
                     /locus_tag="VKJ77_07430"
     CDS             <1..770
                     /locus_tag="VKJ77_07430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC45136.1"
                     /translation="EAAALTIRGRLAELAAKQLGGRAEDVRFHDGVVESNGGQMPFDQ
                     LVGAAYLSRVQLWSDGFYATPKVNWDSKTLTGQPFYYFAYGAAISEVVVDTLTGEWRL
                     LRADILHDAGQSINPALDIGQVEGGFVQGMGWLTTEELWWNRDGRLMTHAPSTYKIPS
                     VSDIPAAMNVALYDNQNVEPTVFRSKAVGEPPLLLGFSVLLAIRAAVASVAPDSTDAP
                     VLRAPATPESILNALDAQALKTLAATTPDAAQPASVN"
     gene            790..>1604
                     /gene="xdhC"
                     /locus_tag="VKJ77_07435"
     CDS             790..>1604
                     /gene="xdhC"
                     /locus_tag="VKJ77_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase accessory protein XdhC"
                     /protein_id="HMC45137.1"
                     /translation="MQAWLHDLQHLLAHGDAVVLVTVARVEGSAPREAGTKMLVTRDD
                     ARHTIGGGHLEWKAIETARQVLKDGARSPHMRRLERFALGPSLGQCCGGAVVVAFERL
                     DIGDLGWVTSLNKRMAQGLSTVRSVGFGPIPDGVMISDPEPGVAGPDCLLWDGAGFDD
                     SGALLTETIAVREFPVVLFGAGHVGAAIVRVLANLPCRVVWVDERDGTFPPIDRLPEN
                     VTMDASGIPEAAVDEAPANSYFLVMTHNHALDLTLAERILRRGDFAFFGMIGS"
BASE COUNT          277 a          503 c          529 g          295 t
ORIGIN      
        1 ccgaagccgc cgcgctcacc attcgaggac gccttgcaga actcgccgcg aagcagctcg
       61 gcggacgcgc ggaagacgtg cgttttcacg atggcgtggt cgagtcgaac ggcggccaga
      121 tgcctttcga tcaactggtc ggagcggcct atctgtcgcg cgtgcagttg tggtcggatg
      181 gtttttacgc cacgcccaag gtcaactggg attcgaaaac gctgaccggc cagcccttct
      241 actactttgc ctatggggcg gcgatctcgg aagtggtcgt cgacacgctc actggcgagt
      301 ggcggctgtt gcgcgcggac atcctccacg acgcgggaca gtcgatcaat cccgcactcg
      361 atatcggcca ggtggaaggc ggttttgtcc agggcatggg ctggctcacg acggaagaac
      421 tctggtggaa tcgcgacggc cgcctgatga cgcacgcgcc gtccacctac aagattccat
      481 cggtgagcga catccccgct gcgatgaacg tcgcgctcta cgataaccag aacgtcgagc
      541 caaccgtgtt ccggtcgaaa gccgtgggcg aaccgccgtt gctgctcggt ttctcggtgt
      601 tgctggccat tcgcgccgcg gtggcgtcgg tcgcgcccga ttcaaccgat gcgcccgtac
      661 tgcgcgcccc ggccacgccc gaatcgatcc tgaatgcact ggacgcgcag gcattgaaaa
      721 cgctcgccgc gacgactccg gacgccgcgc aacctgcgtc ggtcaactaa ccaaccggga
      781 acctattcga tgcaagcctg gctacacgat ctgcaacacc tcctcgcaca cggcgacgcc
      841 gtcgtgctgg tgacggtcgc gcgcgtggaa ggctcggcgc cgcgcgaagc gggcacgaag
      901 atgctcgtca cacgtgacga tgcacgccac accatcggcg gcggccatct ggaatggaag
      961 gcgattgaaa cagcgcggca ggtgctcaaa gacggcgcgc gcagtccgca catgcgccgg
     1021 ctcgagcgtt tcgcgctcgg cccaagcctt gggcaatgct gcggcggtgc ggtcgtggtg
     1081 gcgttcgaac ggctggacat tggcgatctc ggctgggtca cgtcgttgaa caaacgcatg
     1141 gcgcagggac tatccaccgt gcgcagcgtc ggcttcggcc cgattccgga cggggtgatg
     1201 atctccgacc cggaaccggg cgtggccggc cccgattgct tgctttggga cggtgcaggt
     1261 ttcgacgaca gcggcgcgtt gctgaccgaa accatcgcgg tgcgcgagtt tccggtggtg
     1321 ctgttcgggg ctggccatgt gggcgcggca atcgtcaggg tgctcgcgaa tttgccgtgc
     1381 cgcgtggtgt gggtcgacga gcgcgatggc accttcccgc ccattgatcg gctccccgaa
     1441 aatgtcacga tggatgccag tggaatcccg gaagccgctg tggatgaagc accggccaat
     1501 agttactttt tggtgatgac gcacaaccac gcgctcgacc tgacgctcgc cgagcgtatt
     1561 ctccggcgcg gcgattttgc gtttttcggc atgatcggct cgca
//
LOCUS       DATGBK010000520         2303 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_122088, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000520 DATGBK010000000
VERSION     DATGBK010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2303
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122088"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..821
                     /locus_tag="VKJ77_07440"
     CDS             <1..821
                     /locus_tag="VKJ77_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45138.1"
                     /translation="RRCYLTSWRGASQGAAAFAAAMVGAITTALLSPADMQEWGWRIP
                     FVLGGLIGPVGWYLRRRMPSVVVEVPKRPRLATLFSEHARPLFYGTLMMAAPSIGIYI
                     TVFYMPSYLVRTLHRPPVISLITASLSGLVILVVNPLVARIADGQKRRKPIQYLALVI
                     CLALTYPAFLALRMGVSDITALLIILAYVAVALSNAGASTVMMLEAFAPQHRAAALSI
                     MYSFGVAIFGGFSPLIVTWLIARTDNPMMPAWYLIAATCITLFALQRFPERTLD"
     gene            complement(859..1923)
                     /locus_tag="VKJ77_07445"
     CDS             complement(859..1923)
                     /locus_tag="VKJ77_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HMC45139.1"
                     /translation="MALHTRRDGFPQVAVPDAGIVRSSFSTYASEADQQMLAWRDRVG
                     HVVDVLPSKAQLTGGFRGSIDRYAVGDFIFTDSVTDAMSLERSVARVSTDVRRNYVFH
                     IFVHGEVDTGVGMQRKRSAPNSVQGIIAFDMDQPFRVERSACQVLTMFVPRAIVEATI
                     PDADSIHGRVVQHGAPLTQLVVNHALALSRDLPTMSAAQAARELYAGAQLLLAAFRKQ
                     ASLTGDARAAVQAAVMSQVRRFVEANLNQPDLSPSSVVDALQLKRATIYRWFEHEGGL
                     GAYIRNRRLREAADELVRFPHLHVIDIAYGLGFNSASDFTRAFRRAFGMSPLDARARA
                     LELQRESKPELLSSYGPGGR"
     gene            complement(2041..>2303)
                     /locus_tag="VKJ77_07450"
     CDS             complement(2041..>2303)
                     /locus_tag="VKJ77_07450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45140.1"
                     /translation="LKRSFGCISSCFAELSQEGCCDQFVRASPIKPLVLPIKMPMATN
                     ERGGIVFSYRSLLIERACNSRLQCRKPGIASHGAEWTAKLLI"
BASE COUNT          449 a          724 c          670 g          460 t
ORIGIN      
        1 accgccgctg ttatctcacc agttggcgcg gcgcgagcca gggtgcggcc gcatttgccg
       61 ccgcgatggt cggtgcaatt acgactgcct tactctcgcc ggccgacatg caggaatggg
      121 gatggcggat tccgttcgta ctcggggggt tgatcggtcc cgtcggctgg tatttgcgtc
      181 ggcgcatgcc ttctgttgtc gtagaggtac ccaagcgccc acggcttgca accctgttct
      241 cggagcacgc tcgtccgctg ttctacggaa cattgatgat ggccgcgccg tcgatcggca
      301 tctacatcac agtgttctac atgccgagct atctggtgcg gacgctgcat cggccgccgg
      361 tcatcagcct gattaccgcc agcctgtccg gtctggtgat cctggtggtg aacccgctgg
      421 tggcccggat cgccgacggc caaaagcgcc gcaagccaat ccagtacctg gcgctcgtga
      481 tatgtctggc gctgacttat ccagccttcc tggccttgag aatgggtgta agcgatatca
      541 ccgcgctatt gatcatcctc gcgtatgtgg cggtcgcgct cagcaacgcc ggcgcgagca
      601 cggtgatgat gctggaggcc tttgcacctc aacatcgcgc cgccgcgctg tccatcatgt
      661 acagcttcgg cgtggcgatt ttcggcggtt tttcgccgct tatcgtcacg tggctgatcg
      721 ccaggaccga caatccgatg atgcccgcgt ggtatctgat cgccgccacc tgcatcacgc
      781 tttttgccct gcagcgcttc ccggaaagga cgctcgactg atcgggtgag cgcgctggat
      841 tatctcgccg gatgcccgct atctgccgcc gggtccatac gatgacagca attccggttt
      901 gctttcccgc tgtagctcga gcgcgcgagc gcgcgcatcc agcgggctca tgccgaaggc
      961 gcggcgaaac gcgcgcgtaa aatccgatgc actgttgaac cctagcccgt aggcaatatc
     1021 gataacgtga agatgcggga agcggaccag ctcgtcggcg gcctcgcgca aacggcgatt
     1081 gcggatatac gccccgagtc cgccctcatg ctcgaaccag cggtagatcg tggcgcgctt
     1141 caattgcagc gcatccacca cgctcgaagg cgaaagatcc ggctgattca gattcgcttc
     1201 aacaaaccgc cgcacctggc tcatcacggc cgcctgcacg gccgcccggg cgtcgccggt
     1261 caaactcgcc tgcttccgga aagccgcaag caacaactgc gcgcccgcat acagttcacg
     1321 cgccgcctgc gccgcgctca ttgttggcag atcgcggctc agtgccaacg cgtggttcac
     1381 gacgagctgg gtcagcggcg cgccgtgctg caccactcgg ccatgaattg aatcggcgtc
     1441 tggaatcgtg gcctccacga tcgctctcgg cacgaacatc gtcaacacct ggcacgcaga
     1501 gcgctcgacg cgaaacggct ggtccatgtc gaaagcgatt attccctgaa ccgaattcgg
     1561 ggcgctgcgt ttcctctgca tgcccactcc cgtgtcgacc tcgccgtgca cgaagatgtg
     1621 gaaaacatag ttgcgccgca cgtcggtgga gactcgcgcg actgagcgtt caagcgacat
     1681 ggcgtcggtg acggaatccg taaagatgaa atcgccgact gcataccggt cgatactgcc
     1741 gcgaaagccg ccggtgagct gagccttcga aggcaggaca tccacgacat gccccacccg
     1801 gtcgcgccag gcgagcatct gctgatccgc ctccgaggcg tacgtgctga aactgctacg
     1861 gacaatgccg gcgtccggca ccgcaacctg agggaacccg tcccgacggg tatgcaaagc
     1921 cattgttttt acctgatcgc gccccaaaac ggccaacttg tccggccagg gtcgcggtaa
     1981 tcaatttatt tttgagaatt gagacatagg gtaaagcctg cccaaaacag tgcgatatct
     2041 tcagatcaat aacttcgctg tccattccgc accgtgagag gcaatgcctg gtttacggca
     2101 ttgcaagcgg gaattacagg ctctttcgat caaaaggctg cggtaactga aaacgatacc
     2161 gccgcgctca ttcgttgcca tcggcatttt tattggcaag acgagcggct tgatcggcga
     2221 tgcccggacg aattgatcgc aacacccttc ctgagacagc tcagcgaagc acgacgagat
     2281 acagccaaat gagcgcttta aag
//
LOCUS       DATGBK010000521         1601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_330284, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000521 DATGBK010000000
VERSION     DATGBK010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330284"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1601)
                     /locus_tag="VKJ77_07455"
     CDS             complement(<1..>1601)
                     /locus_tag="VKJ77_07455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HMC45141.1"
                     /translation="TLYCGWRFAGPSPLQTNLLALLPATEVDPVAEKAVDTLATALGD
                     RTVFLVTSNDPAHAKAAAKQLGATLLASKAFGSITAELPPFDLSTIAGLYMPYRFGLL
                     TPADRTALADGTVSLHDTLARRLYSPLHSGLATQLADDPFGWLEHWLAGLPLATSNLE
                     LEDGLLVAHQGNTTSVLVMATLPGSAYESKVQHAVHEAVAHGEGALKQSFPDVTLART
                     GAVFYAEAARAASEREVHLIGIASLCGIALLMLWVFRSPRLILLGFVSTALGIVCALA
                     ATMLIFGKLHLLTLVFGASLIGEAVDYSIQYFVVYLGAGRDWDAKRGARTVRPALTVA
                     LTTSLLGYAILTWVPFPALKQIACFAIVGICTAFASVLWLLPALLIRAPKRSPQRVFD
                     GAARLLGVWRAVIGGRRAWGVAALLLIVAVPGWLRLTSDDDIHLLIQRDPVLMAQEQK
                     VRDAVGFDNTSQFFVVRGETPEIVLERAEALGAKLDGLTGAARLSSWQSITSFVPSAK
                     RQGEDHTLLSQRVFNDPAALRATLI"
BASE COUNT          349 a          516 c          478 g          258 t
ORIGIN      
        1 aataagcgtc gcgcgtaacg cggccggatc gttgaataca cgttgactga gcagggtatg
       61 gtcctcgccc tgccgcttcg ccgatgggac gaacgacgtt atcgattgcc agctactcag
      121 ccgggccgcg cccgtcaaac cgtcgagctt cgcgcccagc gcttcagcgc gctcaagcac
      181 gatctccggc gtctcgccac gcacgacgaa gaactgcgag gtgttgtcga aaccgaccgc
      241 gtcgcggacc ttctgctcct gcgccatgag cacaggatcg cgctggatca gcaaatggat
      301 gtcgtcgtcg ctcgtgagcc gcagccagcc cggcacagcg acaatcagca gaagcgccgc
      361 cacgccccac gcccgccgtc cgccgatcac tgcacgccat acgccaagta gacgtgccgc
      421 tccatcgaat acgcgctgcg gactgcgctt gggcgcacgg atcaacaacg ccggtagcag
      481 ccacagcacc gaagcaaacg ccgtacagat gcccactatt gcgaaacagg cgatctgctt
      541 gagcgcgggg aatgggaccc acgtgaggat ggcgtaaccc agcaggcttg tcgtcagtgc
      601 caccgtcagc gccggccgca cggtgcgcgc gccgcgcttt gcatcccagt cacgccctgc
      661 accgagatac accacaaaat actgaatcga atagtcgacg gcctccccga tcaaactcgc
      721 gccgaacacg agcgtcagca gatgcagctt gccgaatatc agcatagtag cggcgagcgc
      781 gcagacaatg ccgagcgctg tcgagacgaa gccgagcagg atcagccgtg gcgaacggaa
      841 cacccacaac atcagcaacg cgatgccgca aagcgacgcg ataccgatca gatgcacctc
      901 acgctccgaa gcagcgcgcg ccgcttcggc gtagaaaaca gcgccggtgc gggccagggt
      961 gacgtcgggg aaactttgct tgagagcgcc ttcgccgtga gccacagctt catggaccgc
     1021 gtgctggacc ttcgactcgt atgccgaacc cggcaacgtt gccatcacaa gaacactggt
     1081 tgtattgcct tgatgcgcga ccagtagacc atcttctagt tccaggttcg aggtcgccag
     1141 cggcaagcct gcaagccagt gttcgagcca gccgaacgga tcgtcggcga gttgagtcgc
     1201 gagcccactg tgcagcgggc tgtagaggcg tcgcgcgagt gtgtcgtgca aagagactgt
     1261 gccgtctgca agcgcggtgc gatcggccgg tgtaagcaag ccaaatcgat aaggcatgta
     1321 cagcccggca atcgtcgata aatcgaatgg cggcagctcc gccgttatcg agccgaacgc
     1381 tttacttgcc aataacgtcg ccccgagctg tttcgccgcg gctttggcat gcgcgggatc
     1441 attgctggtt acaaggaaaa ccgtgcggtc accgagcgca gtcgccaagg tatcgacggc
     1501 tttttcagca accggatcca cttccgttgc gggcaacaac gcaagcaggt tcgtctgcag
     1561 cggcgacggt ccggcaaatc gccacccgca atagagcgta g
//
LOCUS       DATGBK010000522         1702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_330314, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000522 DATGBK010000000
VERSION     DATGBK010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330314"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VKJ77_07460"
     CDS             <1..252
                     /locus_tag="VKJ77_07460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="HMC45142.1"
                     /translation="AELTQIRGIGRWTAEMFLIFNLSRPDVLPLDDLGLIQAISVNYF
                     SGEPVTRSEAREVAANWEPWRTVATWYMWRSLYPVPADH"
     gene            385..1356
                     /locus_tag="VKJ77_07465"
     CDS             385..1356
                     /locus_tag="VKJ77_07465"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HMC45143.1"
                     /translation="MKTTFLDFEQPIAELEAKIEELRFVQDDSAVDISEEIERLSKKS
                     QQLTKDLYANLTPWQVSQIARHPQRPYTLDYVNELFTDFHELHGDRSYADDLAIVGGL
                     ARFNGQACMVIGQQKGRDTKERAARNFGMPRPEGYRKAERLMRLAEKFGLPIFTFIDT
                     PGAYPGIGAEERGQSEAIGRNLYVMAELKTPIVATIIGEGGSGGALAIAVADSVLMLQ
                     FATYSVISPEGCASILWKSAAKAPEAAEALGLTAHRLKALGLIDKIVNEPLGGAHRDP
                     KGMAALLRRALADTLRQFHGMNALDVRARRFDKLMAYGKFKENLPGA"
     gene            1473..>1702
                     /locus_tag="VKJ77_07470"
     CDS             1473..>1702
                     /locus_tag="VKJ77_07470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC45144.1"
                     /translation="MTSSDIDTPASRLVIDALRAAFVDVLASPEPCIAVALSGGLDST
                     ALLDAAVRCAGQTRVIALHIHHGLSPNADAWAA"
BASE COUNT          325 a          509 c          526 g          342 t
ORIGIN      
        1 gcggagttga cgcagattcg cggcattggc cggtggacgg cggaaatgtt cctgatcttc
       61 aacttgtcgc gcccggacgt cctgccgctc gatgatctcg gcctgatcca ggccatcagc
      121 gtcaactatt tcagcggcga acccgtgacc cgcagcgaag cgcgcgaggt cgcagccaac
      181 tgggaaccgt ggcgcacggt tgcgacctgg tacatgtggc gcagccttta ccccgttccc
      241 gccgatcact aaaatttccc ggccgcatgg tcgggccgca gtcggcggac tattgatatc
      301 ttataatcga tagttgcgac ccgaaattta gtgaggccgg cgcggttaga atacgcgctg
      361 cccgatgctc taggattcga acatatgaag accacgtttc tggatttcga acagcctatc
      421 gctgaactcg aagcgaagat cgaagaattg cgcttcgttc aggacgattc cgctgtcgat
      481 atttcggaag aaatcgagcg gctgtcgaag aagagccagc aacttaccaa agatctttat
      541 gcaaacctga ccccctggca ggtttcgcag atcgcgcgcc atccgcagcg cccgtacacg
      601 ctcgactatg tgaacgagct tttcaccgac ttccatgaac tccatggcga ccgctcttat
      661 gcggacgatc tggctattgt tggtggcctg gcgcgattca acggccaggc gtgcatggtg
      721 atcggtcagc agaagggccg cgacacgaaa gagcgcgcag cgcgcaattt cggcatgccg
      781 cgcccggagg ggtatcggaa ggctgagcgg ctcatgcggc ttgcggagaa attcggcttg
      841 ccgattttca cgttcatcga caccccgggc gcgtaccccg gtattggggc agaggagcgt
      901 gggcagtcgg aagcaatcgg ccgtaatctg tatgtgatgg ccgaactgaa gacgccgatt
      961 gtggcgacca tcatcggcga aggcggttct ggcggcgcgc tcgccattgc cgttgccgac
     1021 agcgtgctga tgctgcaatt cgccacttat tcggtgattt cgcccgaggg ctgcgcgtcc
     1081 atcttgtgga agagcgcggc gaaggcgccg gaagcggccg aagcgctggg tttgacggct
     1141 caccggttga aggcgttggg actgatcgac aagatcgtca acgagccgct gggcggcgcg
     1201 catcgcgatc cgaaaggcat ggctgcattg ctgcgccgtg cattagccga tacgctgcgc
     1261 cagttccacg gcatgaatgc gctagacgtt cgcgcgcgcc gcttcgacaa gctgatggca
     1321 tacggcaagt tcaaggaaaa cctgccgggt gcgtgaagct tgagtgcggc gctcacgctt
     1381 ccctccatgc agtttgccct gacaggctgc cgttaaggtg cctcgaaggt gcctcgaagg
     1441 tgccgtgcag gcaacttaac aagccgactt ccgtgacatc ctccgacatt gacactcccg
     1501 ccagccgcct cgtgatcgat gcgctgcgcg cggcgttcgt cgatgtgctg gcttcccctg
     1561 aaccctgcat cgccgttgcc ctcagcggcg gtctcgactc gaccgcgctg ctcgatgccg
     1621 ccgttcgatg cgcgggacaa acgcgtgtca tcgcgttgca cattcatcac ggcttgagtc
     1681 cgaacgccga cgcctgggcc gc
//
LOCUS       DATGBK010000523         2919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_191961, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000523 DATGBK010000000
VERSION     DATGBK010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191961"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..428)
                     /locus_tag="VKJ77_07475"
     CDS             complement(<1..428)
                     /locus_tag="VKJ77_07475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017329152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HMC45145.1"
                     /translation="MLSVDPVIPGIAAIAPDLIAVRRQIHANPELAFEERATSDLVAS
                     LLTQWGYEVTRGLGKTGVVGVLKMGDGSRRIGLRADMDALPIEEATGLPYTSAVPKTM
                     HACGHDGHTAMLLCAARYLAESRQFSGTLTLIFQPAEESYG"
     gene            565..1497
                     /locus_tag="VKJ77_07480"
     CDS             565..1497
                     /locus_tag="VKJ77_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45146.1"
                     /translation="MKYHQLRAFLTVAEQGSIRAAARSLHLSQAALTKALKELEQDLG
                     VPLVLRTARGVQLTAFGLQLRIRAQMVVSEMRRAEDDIAHMKGEVTGSVAAAITPTAA
                     LSILPKAFSAFRKKMPDARVSFIEGFPGVALPRLRDGSLDFVVAVVVPEHLDSAFDYI
                     ELYKISSVVVARQAHPLALCTSLADLVDAEWLLNPSPESSTRGLLDFFATSGLPVPQK
                     VIECPSFVIAHGLLRGSDTVAMLPEPLLDQPWVREGIAVLPIANLPPPIAIGVVTRRD
                     SPLTPAASLLLDCLQDAVTSLRLNVPTRRSIQGR"
     gene            complement(1480..1953)
                     /locus_tag="VKJ77_07485"
     CDS             complement(1480..1953)
                     /locus_tag="VKJ77_07485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006754260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HMC45147.1"
                     /translation="MKNRLSSPPGLVLLDQTDRELLAVLSEDGRIAMSELARRIGLSA
                     PSTAERVRQLEARGVIQGFAVRLDPRALGYTLQAIVRVKPLPGQLHLVEEAIRRIPEF
                     VECDKVTGDDCFVCRLFLKTIEQLDEILSKVAERAETSTAIIKSTPVERRLPPLD"
     gene            2074..>2919
                     /locus_tag="VKJ77_07490"
     CDS             2074..>2919
                     /locus_tag="VKJ77_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011546366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HMC45148.1"
                     /translation="MSSREMRVGCVEMSVAMLISGTVGWLVVSSQQTPLNVVFIRCVF
                     GAATLLAICALKGMLRKSLFSLRMLGLVALGSATIVGNWVLLFAAYSRASISMATAVY
                     NTQPFMLVLLGAVVFRERITLRTILWLSVAFLGLVLVVRVEPAVLAKPGEYLEGIGYA
                     LGAAFLYAICSIVTKQLKGTPPHLIALLHVALGIIMLAPFVDFQHLPNTPNHWADLVV
                     LGVVNTGIMHVLLYGAIQKLPTAVTGALSFIYPVVAIIVDRVAFGQRLGWLQIVGAAL
                     ILLAAA"
BASE COUNT          523 a          829 c          921 g          646 t
ORIGIN      
        1 ccgtaacttt cttcggccgg ctggaagatc agcgtcaacg tgccggaaaa ctgccggctt
       61 tccgcgaggt agcgcgcggc gcacaggagc attgcggtgt ggccgtcgtg accgcaggcg
      121 tgcatggtct tcgggacggc gctggtgtag ggaaggccgg tcgcttcttc gatgggcaac
      181 gcgtccatat cggcgcgcag gccgatgcgc cggctgccat cacccatttt cagcacgccg
      241 accacgcccg tcttgccaag cccgcgcgtc acttcgtagc cccattgcgt gagcaggctg
      301 gcgacgaggt cgctggtcgc gcgttcctcg aacgcgagtt ccggattggc gtggatctgg
      361 cgccgcacgg cgatgaggtc cggcgcaatg gcggcaattc caggaatgac tggatcgact
      421 gacagcatga ctaactcctt attacgtttc gatattcagc gtgactgctc ccggtcaagc
      481 atataaagtc acaaagaaaa ccaaaagaca gttaattaaa tttgtgacta ctactagttg
      541 tcggtataaa cccttgaatc tccgatgaaa taccatcagt tgcgcgcgtt cctcaccgtt
      601 gccgagcagg gcagcatccg cgcggcggcg cgtagcctgc atctatcgca ggcggcattg
      661 acgaaggcgt taaaagaact cgaacaggac cttggggtgc cgctcgtgct gcgcaccgcg
      721 cgcggcgtgc agctgaccgc gttcggcttg caattgagga ttcgggcgca gatggtggtg
      781 agcgagatgc gtcgtgccga agacgacatc gcgcatatga aaggcgaggt gaccggcagc
      841 gtggcggccg cgatcacgcc gaccgccgcg ttatcgatcc tgcctaaggc gttcagcgca
      901 tttcgaaaga agatgccgga tgcacgcgtg agttttatcg aaggatttcc gggggttgcg
      961 ttgccgcgtt tgcgcgacgg gtcgcttgat ttcgtcgtgg ccgtggttgt gccggagcat
     1021 ttggattcgg cgttcgacta catagagcta tacaaaatca gttcggtggt cgttgcgcgg
     1081 caagctcatc cgctagcgct ttgcacgtcc ctggctgacc tcgtcgatgc ggaatggctg
     1141 ttgaatccgt cgcccgaaag ctcaacacgc ggactgctcg atttcttcgc cacgtccggt
     1201 ctgccggtgc cgcagaaagt gatcgagtgt ccgagcttcg tgatcgcgca cgggttgctg
     1261 cgtggctcgg ataccgttgc gatgttgccc gagcccttgc tggatcaacc gtgggtgcgc
     1321 gagggtatcg ccgtgttgcc tatagccaac ctgccgccgc cgatcgcaat cggcgtagtg
     1381 actcgccgcg atagcccgct gacgccggcc gcttcgttgc tgctggattg tttgcaggac
     1441 gcggtgacgt cgctcaggtt gaacgtcccg acgcgccgtt caatccaggg gcggtaggcg
     1501 gcgttcgaca ggcgtcgact tgatgatcgc cgtgcttgtc tcggctcgct ctgcgacctt
     1561 cgacagaatc tcgtcgagtt gttcgattgt cttgagaaag agccggcaga caaaacagtc
     1621 gtcgccggtg accttgtcgc attcgacgaa ttcgggaatg cgccggatgg cttcttccac
     1681 caagtgcagt tgacccggca gtggcttgac tcgaacgatg gcctgaagcg tgtatcccag
     1741 cgcacgcggg tcgagcctga ccgcgaaccc ctggatcacg ccacgcgctt cgagctggcg
     1801 cacgcgctcg gctgtgctgg gcgccgacaa gccaatccgg cgcgcgagtt cactcatcgc
     1861 gatccggccg tcttcggata gaacggcgag caattcgcgg tcggtctggt cgagcaaaac
     1921 gaggcccggc ggggaagaaa ggcgattctt caaatgaacc ttcgatttga agttaaaacg
     1981 tcaatgtccg ctcattttac acatggaatc gcgcttggcc gcccactaaa cttactagac
     2041 agatggagct ggcaccactt gaaaggcgag gcgatgagct cgagagaaat gcgcgttgga
     2101 tgcgtagaaa tgagtgtagc gatgctgata tccggcacgg tcggctggct ggtcgtgtcg
     2161 tcgcagcaaa cgccgctgaa cgtcgtgttc attcgttgcg tgttcggcgc ggcaacgctg
     2221 ctcgcgatct gcgcgttaaa agggatgctg cgaaaaagtc tgttttcatt gcgcatgctt
     2281 ggactggtag cgctcggcag cgcgacgatt gtcggcaact gggtgctgct gtttgcggcc
     2341 tattcgcgag cttccatatc gatggcgacc gcggtctata acacccagcc gttcatgctc
     2401 gttctgctcg gcgcggtggt gtttcgcgaa cggatcacct tgcgcacgat tctctggctc
     2461 agcgtcgcgt ttttgggcct cgtgctggtc gtgcgagtgg agcctgcggt gttggccaag
     2521 cccggtgaat atctggaggg tatcggctat gcgctcggcg cggcatttct ctatgcgatc
     2581 tgttcgatcg tgaccaagca gctcaaagga acgccacccc atttgattgc gttgttgcat
     2641 gtggcgctcg gcatcatcat gctcgcgccg ttcgtcgatt tccagcatct gcctaacact
     2701 ccgaatcatt gggcggatct cgtcgtgctc ggcgtggtca acaccggcat catgcacgtg
     2761 ctgctttatg gcgctatcca gaaactgccg accgcggtga ccggcgcgct gtccttcatc
     2821 tatccggtcg tggcgatcat tgtggaccgg gtcgcgttcg gacaacgctt aggatggctg
     2881 cagattgttg gcgcggcgtt gattctgctg gcggccgcc
//
LOCUS       DATGBK010000524         2424 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_122147, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000524 DATGBK010000000
VERSION     DATGBK010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122147"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VKJ77_07495"
     CDS             <1..257
                     /locus_tag="VKJ77_07495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HMC45149.1"
                     /translation="RRLIQPKFVALLVSRLKPGGYLHLATDWQNYAEQMLEVLSAEPA
                     LENTAGSDYAERPDYRPVTKFERRGLKLGHGVWDLVFKRC"
     gene            complement(421..1254)
                     /locus_tag="VKJ77_07500"
     CDS             complement(421..1254)
                     /locus_tag="VKJ77_07500"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HMC45150.1"
                     /translation="MDWILFCKALILGVVEGLTEFLPVSSTGHLIVAGSLLNFTNAQA
                     KTFDVVIQFGAILAIVWEYRRKIGSVVAGLPTQPKARRFTLNVIIATIPAVVLGLLFE
                     KHIKAVLFAPVPVSVALIVGGVVILWAEARHRERNVAPRVTSVDDLSYADAFKVGLAQ
                     CFALIPGTSRSGSTIIGGMLFGLERKVATEFSFFLAIPIIFGATLYELAKEWRTLSVD
                     SLGLFIVGLLAAFISAFVCIRWLLRYVATHDFTAFAWYRIGFGLLILIVGYSGGLSWA
                     D"
     gene            complement(1333..1920)
                     /locus_tag="VKJ77_07505"
     CDS             complement(1333..1920)
                     /locus_tag="VKJ77_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1439 domain-containing protein"
                     /protein_id="HMC45151.1"
                     /translation="MTQAVAPTRRRFLLAALGGAGAVALGTQGCAASIFPFIPDHYTF
                     SQAQVQDAVQRKFPLQRTASQIFDVTLSNPLVGLAPDRNRITVRLDARLATPFMPNPV
                     TGVFTLSSQLAYDASSHAVILVSPTVDDAQVSGDAAQYSQQINAVGAVMATQFLDRYP
                     IYTFKPEQLQFAGVNYEPGTITVLTNGIRVQIVEK"
     gene            complement(1980..2273)
                     /locus_tag="VKJ77_07510"
     CDS             complement(1980..2273)
                     /locus_tag="VKJ77_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006488585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HMC45152.1"
                     /translation="MSTAPDPPSVHACRESCGACCIAPSISSAIPGMPDGKPAGVRCV
                     QLGADLRCAIFGDPRRPACCSGLQPSESMCGDTRAYALAWLTQLEIDTQPERA"
BASE COUNT          535 a          738 c          726 g          425 t
ORIGIN      
        1 aacgccggct gatccagcca aagtttgttg cgctgctcgt gtcgcggctc aaaccgggcg
       61 ggtatctgca tctcgccacc gactggcaga actatgccga acagatgctg gaagtgttgt
      121 cggcggaacc ggcactggaa aacacagccg gctcggatta cgccgagcgt cccgattacc
      181 ggcccgtgac caagttcgaa cgccgcggat taaagctcgg tcacggcgtg tgggatctgg
      241 tgttcaagcg ctgctgaacc gtggcttaat aatccgtcag accaacgcaa aaacaggccg
      301 ttccaaccca cgttggaacg gcctgtttcg tatgcgcttg cggacttcga gccttaactc
      361 gggctttaac tttcaggcag caccaacgca ttggtgaacg gctctaaaaa ccgcgcaaca
      421 tcagtccgcc caacttaacc cgccgctata tccaacaatc aggatcagca gcccgaagcc
      481 gattcgatac cacgcgaacg ccgtgaaatc gtgcgtggca acgtaacgca acagccagcg
      541 aatacacacg aatgcgctta taaacgcagc caagagccca acaataaaca agcccagcga
      601 atcgacggac agcgtgcgcc actccttcgc gagctcgtaa agcgtggcgc cgaaaataat
      661 gggaatggcg aggaagaaag agaactcggt ggcaacttta cgttccagcc cgaacaacat
      721 cccgccgata atcgtcgacc ccgagcgcga ggtgcccgga atcagcgcga aacattgggc
      781 cagcccgact ttgaaggcat cggcgtaaga gagatcgtcc accgacgtca cccgcggcgc
      841 gacgttgcgc tcgcgatgcc gggcttccgc ccacaggatc acgaccccgc ccacgatcag
      901 cgccacggac accggcaccg gcgcgaacaa aacggccttg atgtgctttt cgaacagcaa
      961 gccgagcacc accgccggaa tggtcgcgat gatcacgttc agggtgaacc ggcgcgcctt
     1021 gggctgcgtg ggcaacccgg cgacgaccga gccgatcttg cggcggtatt cccagacaat
     1081 cgcgaggatc gcgccgaact ggatcacaac gtcgaaggtc ttggcctggg cgttcgtgaa
     1141 attcagcaga ctgccggcaa cgatcaaatg ccccgtgctc gataccggca gaaactctgt
     1201 caaaccctcc accacaccca gaatcagtgc tttgcaaaac agaatccagt ccatcgctcc
     1261 gcccttttgg catagtttgg ccgtcgccag ccaatcattc gggcacgcgc gtaccggatt
     1321 gcgccggaaa aactacttct cgacgatctg cacgcgtatg ccgtttgtaa ggaccgtgat
     1381 tgtaccgggt tcgtaattaa caccggcaaa ctgtaattgt tctggcttga atgtgtagat
     1441 ggggtaacgg tccaggaact gcgtcgccat gaccgcgccg actgcgttga tctgctggct
     1501 gtattgcgca gcgtcgccgg agacctgggc gtcgtcgacc gttggcgaca ccaggatcac
     1561 ggcgtgactg gaggcatcgt aagcaagttg actggaaagg gtaaacacgc cggtgaccgg
     1621 attcggcatg aacggcgtcg caagtcgcgc gtccagccga acggtaattc ggttgcgatc
     1681 gggcgcgagg cccaccagcg gattgctcag cgtgacatcg aagatctgcg aggccgtgcg
     1741 ttgcagcggg aacttgcgct gcactgcgtc ctggacctgc gcctggctaa acgtgtagtg
     1801 atcgggaatg aacggaaata tcgatgcggc gcatccctgg gttcccagcg ccaccgcgcc
     1861 cgcgccgcca agggctgcga gcaggaaccg gcgccgtgtt ggcgcaacgg cttgagtcat
     1921 gcgaaattct ccagtgactt gaacctgaat ttgaacttga gcgatgagcc ttcgaccggc
     1981 taggcgcgct caggttgcgt atcgatttcg agttgcgtga gccaggccag cgcataagca
     2041 cgcgtgtcgc cgcacatgga ctccgatggc tgcaagcccg agcagcaggc cggcctgcgc
     2101 ggatcgccga aaatcgcaca gcgcagatcc gccccaagct ggacgcagcg tacaccggcc
     2161 ggcttgccgt cgggcatgcc gggaatcgcg ctcgaaatcg acggcgcgat acagcatgca
     2221 ccgcagcttt cgcggcacgc gtggacggag ggtggatccg gggcagtgga catcggttcg
     2281 ggtgttcggt gacttcggca cgttgagcaa cccggcattg tgccaccgcg cggctgcggc
     2341 gttcggtgcg gcgttatcac gcaagaatca ggggaacggg tcagctagac tcggagcacc
     2401 ctcctcaagt ctgtccgcaa tgtc
//
LOCUS       DATGBK010000525         1543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_75884, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000525 DATGBK010000000
VERSION     DATGBK010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75884"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..705
                     /locus_tag="VKJ77_07515"
     CDS             133..705
                     /locus_tag="VKJ77_07515"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HMC45153.1"
                     /translation="MPSSPDTPAAIVRRKARCFRRDRRGSAAVEFALVAPVFFGLLFA
                     IIEAALVFFASQTLETATQDVARLVMTGQAQGIGYTQSQFKDQVCSRISALFDCQNGI
                     YVDVESFPSFDKAIPPDAIDPNKQFVTTMQYKPGQACDVVLVRLFYQWPVFVTRLGYD
                     YDMSNLGNGKRLLTATAAFRNEPFGSGACP"
     gene            702..1295
                     /locus_tag="VKJ77_07520"
     CDS             702..1295
                     /locus_tag="VKJ77_07520"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HMC45154.1"
                     /translation="MSFIAELLGRSRRLRTAFLRDTQGLAAVEFAMIIPLMLLTFFGM
                     NEVTTYVTISRKVTIVARTLSDLTSQATSVTDTQLGNFLLASGLIMAPYSSPSVQATI
                     SQIKIDAKTLNATVSWSYGASPHGTGSSVTVPDGLKPVLSTPSAPTADVYLIWSEVSY
                     LYRPLTDYTMTDTTVSDQTYTRPRQSSCVNYNGVAAC"
     gene            complement(1408..1542)
                     /locus_tag="VKJ77_07525"
     CDS             complement(1408..1542)
                     /locus_tag="VKJ77_07525"
                     /inference="COORDINATES: protein motif:HMM:NF012534.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HMC45155.1"
                     /translation="MFVHISAVERAGLGTLREGQKISYEIVADRRSGKSSADNLRAAG
                     "
BASE COUNT          309 a          460 c          455 g          319 t
ORIGIN      
        1 cgcgggacaa attgattaat gcccggttaa tgcccccggg cgtcttgtct cgattcgacg
       61 aaacacttcc acaatgagtt tcggctagaa gcttggcggt agatatttcc tgccgtccca
      121 aggaactcgc cgatgccgtc atctccggac acgcctgcag cgatcgtaag gcgcaaggcg
      181 cgttgctttc gacgcgaccg gcgcgggtcc gcggccgtcg aatttgccct ggtcgcaccg
      241 gtatttttcg ggctgctgtt cgcgatcatc gaagcggctc tggtcttctt cgcgagtcaa
      301 acgctcgaga ctgccacgca ggatgttgcg cgtctggtga tgaccggcca ggcgcagggc
      361 atcggctaca cgcaaagcca gttcaaggac caggtctgca gccgaatctc cgcgctgttc
      421 gattgtcaga acggcatcta cgtcgatgtc gaaagcttcc cctcgttcga caaggcgata
      481 cctcccgatg caatcgatcc caacaagcaa ttcgtcacga cgatgcaata caagccgggc
      541 caggcgtgcg atgtcgtgtt ggtgcggttg ttctatcagt ggccggtctt cgtaacgcgc
      601 ctcggctacg actatgacat gtccaatctt ggtaacggca agcggctgct gaccgctacg
      661 gcggcattca ggaacgaacc ctttggcagc ggagcatgtc catgagcttc atcgcagaat
      721 tgctcggccg ctcacgccgt ttgagaaccg cgttcctgcg cgatacccag ggtctcgcgg
      781 ccgttgagtt cgcgatgatc attccgctca tgctgctgac gttcttcggc atgaacgagg
      841 taacgaccta cgtcacgatc agccgcaagg tgacgatcgt tgcgcggacg ctgtcggatc
      901 tgacatcgca ggcgacctcg gtcaccgata cccaactggg taatttcttg ctggcgagcg
      961 ggttgatcat ggcgccatat tcgtcgccgt cggtgcaggc gacgatttcg cagatcaaga
     1021 ttgacgccaa gacgctgaac gcaaccgtca gctggagtta tggtgccagt ccgcatggca
     1081 cggggagctc cgtaaccgtt cctgacgggc tcaagccagt cttgtccacg ccgagtgcgc
     1141 cgactgcgga tgtctatctg atctggagcg aggtgagtta tctctatcgc ccgctgacgg
     1201 attacacgat gaccgacacc acggtcagcg accagacata tacgcggccg cgccaatcgt
     1261 cctgcgtcaa ttacaacggc gtggcggcgt gctgacgcga ggcggatgat ccgcaatcgc
     1321 atgcacaaaa tgaaaaggcc gcgcaacagg cgcggccttt tcgtatgctt ttgaaaatcc
     1381 cgcagaacaa gcctgcggaa atctgcgtca gccagcggcg cgcaggttgt cggccgagga
     1441 tttgccagag cggcgatcgg cgacgatttc gtagctgatc ttctgaccct cgcgcagcgt
     1501 accaaggccg gcacgctcga cagcgctgat gtgcacgaac acg
//
LOCUS       DATGBK010000526         7239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_307289, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000526 DATGBK010000000
VERSION     DATGBK010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 7239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7239
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307289"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..301)
                     /locus_tag="VKJ77_07530"
     CDS             complement(<1..301)
                     /locus_tag="VKJ77_07530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HMC45156.1"
                     /translation="MSFDSLGLSEPLLRAVNELGYTIPTPIQLQAIPAVLNGGDLLAG
                     AQTGTGKTAGFTLPILQRLSEAPAPAAGAKRPVRALILTPTRELAAQVEESVRGYG"
     gene            complement(612..1232)
                     /locus_tag="VKJ77_07535"
     CDS             complement(612..1232)
                     /locus_tag="VKJ77_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009914721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HMC45157.1"
                     /translation="MHIGERFNSVTHLVGSVLSVAGVATLVTMAAMERDPYKIVSFAV
                     YGAMLLVLYTISTLYHSVRSPRAKAVLQKCDHSAIYLLIAGSYTPFTLVTLRGPWGWS
                     LFGVSWGLAALGIVQELTLGRRTRSVSMVIYVLMGWLALVAIRPLVSALPPAGTAWLL
                     AGGLIYSAGIYFFINDERIRHGHGIWHLFVLGGSLCQFVSIARYVA"
     gene            complement(1511..2809)
                     /locus_tag="VKJ77_07540"
     CDS             complement(1511..2809)
                     /locus_tag="VKJ77_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HMC45158.1"
                     /translation="MKRKSLFALSAVVVITAAAAAAALWSGGDTFRSGGAVAAVPADQ
                     TELIKRGEYLARAGDCIACHTVRGGKTFAGGLPMLTPFGTLYTPNITPDDQYGIGKWT
                     SEDFYRSIHLGRSKDGSLLYPAMPFTAYTKVTRADSDAMFAYMRSVPPVNVASRPHEL
                     RFPFNQRNMLIGWRVLFFSEGEFKPDPTKSVEWNRGAYLIEGLGHCSMCHTSINAMGG
                     PVSSAAFGGGLIPLQNWYAPSLTSNKEAGLGDWDIKDINDLLKTGVSQRGAVFGPMAE
                     VVHNSLQYLSDADINAMSTFLKSIPQKGEAPETMQFETSAQFGSELLQQGKKIYTENC
                     AKCHAENGLGKPPAYPPLATNQSIQMPSAVNPIRMVLNGGYPPSTDGNPHPYGMPPFA
                     QALSDTEVAAVVTYIRMSWGNHGTPVSPQQVSNLRSAPLD"
     gene            complement(2831..3592)
                     /locus_tag="VKJ77_07545"
     CDS             complement(2831..3592)
                     /locus_tag="VKJ77_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HMC45159.1"
                     /translation="MECRVSSRRIFRPLLAPLMALALIGSSSLAGAAEAPAPAQAAAQ
                     PMAPDTMAARVQGCTACHGVHGEGTDNDYFPRLAGKPADYLYNQLQNFREGRRKYPPM
                     NYLVTYLSDDYLHQIATYFSQQRPPYPQPAKPTVSASTLSKGQQIVLNGDVGRGIPAC
                     AACHGANLTGMQPAIPGLVGLHSDYISAQLGAWRAGSRHAIAPDCMQQIATRLTDDDV
                     TSVAAWLSTQTAPANPVPAPAGSRKTPLACGSEPQ"
     gene            4037..4972
                     /locus_tag="VKJ77_07550"
     CDS             4037..4972
                     /locus_tag="VKJ77_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011657850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HMC45160.1"
                     /translation="MSDDPLWFAQVLIAAIGDIAFACTLGGALLSVWLSKENAAAPVS
                     PARLGWVRARRLSAGGAVVLAVADLVLVWMQAASMSGAPLFQAFDAVVTVVTGTHAGT
                     GWAIAFAGSVLLILATVLAKPKGGPRVGLFAIGALVAAAGKASVGHAADAGAFSLAEG
                     VQTVHLLATAVWGGLVIASAWRVLPALGTSLARASLIRISGKVSAAAVVAVSLVILTG
                     IYNAWRGLGGSVEALETSGWGHALVVKGVLIATALLLGAMNRWSVMPRLQRTASTVDA
                     HTFTGVMRMEALLIVGVFVAAAVLSHSVPGFSAMG"
     gene            complement(5022..5327)
                     /locus_tag="VKJ77_07555"
     CDS             complement(5022..5327)
                     /locus_tag="VKJ77_07555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018443755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45161.1"
                     /translation="MYYYTLPDEFVRTQMAVGALVLFGVLRVIGAVMGAQHGWRMSTV
                     TRCFIGAAVLFCLPQLLDVLLSSPMSHRAFVELQGKAIGCALALFCAPIVSHKLGYE"
     gene            complement(5628..6776)
                     /gene="dgoD"
                     /locus_tag="VKJ77_07560"
     CDS             complement(5628..6776)
                     /gene="dgoD"
                     /locus_tag="VKJ77_07560"
                     /EC_number="4.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008869 - galactonate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009063 - amino acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactonate dehydratase"
                     /protein_id="HMC45162.1"
                     /translation="MKITKLETFIVPPRWCFLKITTDEGIVGWGEPVVEGRAHTVAAA
                     VDELSDYLIGKDPLLIEDHWQVMYRAGFYRGGPIGLSAIAGVDQALWDIKGKHHGVPI
                     HALLGGQVRDRIKVYSWIGGDRPSDVANNARAVVDRGFKAVKMNGSEELQIIDTFDKV
                     QAVINNVAAVREAVGPNIGIGVDFHGRVHKPMAKVLAKELDPFKLLFIEEPVLSENVE
                     ALRDIVNQTSTPIALGERLYSRWDFKHILAGGYVDIIQPDASHAGGITECRKIASMAE
                     AYDVALALHCPLGPIALATCLQIDAVSYNAFIQEQSLGIHYNKGNDLLDYIKNPEVFK
                     YEDGMVMIPQGPGLGIEVNEDKVREMAKVGHRWRNPVWRHADGSVAEW"
     gene            6929..>7239
                     /locus_tag="VKJ77_07565"
     CDS             6929..>7239
                     /locus_tag="VKJ77_07565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006757977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC45163.1"
                     /translation="MLGKGKDIQQDLHGRVAYDLGTEILRGDFPPASTLPREAELMER
                     FGVSRTVLREALRTLTSKGLIESRPRIGTRVRPRQAWNLLDADVLEWYSRVAKPLQFA
                     I"
BASE COUNT         1357 a         2120 c         2278 g         1484 t
ORIGIN      
        1 taccgtagcc gcgcacgctt tcttccacct gggcggcgag ttcgcgggtc ggcgtgagga
       61 tcagcgcgcg gaccgggcgc ttggcgccgg ccgccggcgc gggtgcttcg gacaaacgtt
      121 gcaggatagg cagcgtaaag cctgctgtct tacccgtacc ggtttgggcg cctgcgagca
      181 ggtcgccgcc gttcagcaca gccgggatgg cctgcaactg gatgggagta gggatggtgt
      241 agccgagttc gttgacagcg cgaagcaagg gttcggacaa gccgagggaa tcaaaagaca
      301 taagtgttca cagattcggt atgacgaccg gcgctatcgc ttaagcccca aaaggcctga
      361 ggccccaaaa aaaggcggcc cgcacaacta ggtgcgtgcg tacgacgatc gaggaaatcg
      421 ggcggcatga cgttcggggc gcttgctcaa agcacaagct acgagcgccg ggaaagttgc
      481 cgcgaagatc aacgcgctat caagacacgc tgactggcgt taagttgcat ttgaaacgcc
      541 gtaaaacgct tcgcatcagg cattgggtgc cgttttaggg ccgactcacg ctacgtactc
      601 atgcaacatg cttaagctac gtagcgtgca atgctgacga attgacacaa gctgccgccc
      661 aacacgaaca ggtgccagat gccatgtcca tgccggatgc gctcgtcgtt gatgaaaaag
      721 taaatgccgg cgctgtagat caaaccgccg gccagcagcc acgccgtgcc ggcgggcggt
      781 agagccgaaa cgagaggacg gatggctacg agcgcgagcc agcccatcaa cacgtaaatc
      841 accatcgata cgctgcgggt tcgacgcccg agcgtgagtt cctgaacgat gccaagagcg
      901 gcgagccccc agcttacgcc gaataacgac cagccccacg ggccgcgcag cgtgacgagc
      961 gtgaacggtg tgtagcttcc cgcgatcagc aagtaaatgg ccgaatgatc gcatttttgc
     1021 aataccgcct tggcccgcgg gctgcggacc gagtggtaca gcgtggaaat ggtgtacagc
     1081 acaagcaaca tggcgccgta caccgcaaaa ctgacgatct tgtacgggtc gcgttccatc
     1141 gcggccatgg tgacgagcgt agcgacccct gccaccgaca gcaccgagcc gacgagatgg
     1201 gtaacgctgt tgaaccgttc accaatgtgc atcgaccatc ctcatcgcgc tattgcgatc
     1261 ctgtctgcaa cgccgcgctt ttctgcttca tcttccacat taggaagtgt tgagaccgga
     1321 gcaaaacccg cgcaatccgg caaaccgacc tgggcatttt accgttcccg aggtccatcc
     1381 agcctgccta cccacgttcc atcttattcg tcctcaaaaa agaagaaggg cgcagccccg
     1441 gtttcgaggc ctgcgccctg cttgcgcctt tcagcgtatt ttacgctacc tgcggaaaac
     1501 ccttctttta tcagtcgagc ggcgccgaac gcaggttgct gacttgttgc ggtgacaccg
     1561 gcgtaccgtg gttgccccac gacatacgaa tgtacgtcac caccgcagcc acttccgtat
     1621 ccgacagcgc ttgagcgaac ggcggcatgc cgtacggatg cgggttgccg tccgtactcg
     1681 gcgggtaacc gccattgagc accatgcgga tcgggttcac ggctgacggc atctggatgg
     1741 actggttcgt ggcaagcggc gggtaggccg gcggtttgcc gagaccattt tccgcgtggc
     1801 acttcgcgca gttttccgtg tagatcttct tgccctgctg cagcaattcc gaaccgaatt
     1861 gcgccgatgt ttcgaactgc atcgtttccg gcgcttcacc cttttgcggg atcgacttca
     1921 ggaacgtcga catggcgttg atgtccgcgt ccgacaagta ctgcaagctg ttgtggacca
     1981 cttcggccat cgggccaaac acggcgccgc gctgcgacac accggtcttc agcaagtcgt
     2041 tgatgtcctt gatgtcccag tcgccgaggc cggcttcctt gttcgacgtc aacgacggtg
     2101 cataccagtt ctgcaacggg atcaggccgc cgccgaacgc tgccgagctg accgggccgc
     2161 ccattgcgtt gatcgatgta tggcacatgc tgcaatggcc aagcccttcg atcaggtaag
     2221 caccgcggtt ccactcaact gacttggtcg gatccggctt gaattcgcct tcgctgaaga
     2281 acagcacgcg ccagccaatc agcatgttgc gctggttgaa cgggaagcgc agttcgtggg
     2341 gacggctggc tacattgacc gggggcaccg agcgcatgta cgcaaacatg gcgtccgagt
     2401 cggcgcgggt gaccttggta taagccgtga acggcatggc cgggtacagc aggctgccat
     2461 ctttcgagcg accgagatgg atcgaccggt aaaaatcttc cgacgtccac ttgccgatac
     2521 cgtactggtc gtccggcgtg atgttcggcg tgtagagcgt gccgaacggc gtgagcatgg
     2581 gcaggccgcc ggcaaacgtc ttgccgccgc gaaccgtgtg gcaggcaata cagtcaccgg
     2641 cacgcgccag atattcaccg cgtttgatca actcggtctg gtcagcgggc actgcggcaa
     2701 cggcgccgcc cgaacggaag gtgtcgccac ctgaccagag tgcggcagcg gcggcggcgg
     2761 ccgtaatcac aacaacagcc gaaagtgcga acagggactt gcgtttcata ttcttctcgc
     2821 tcctcgcgcc ttattgcggt tcgctgccgc aggcgagcgg cgttttgcgc gagcctgcgg
     2881 gcgcgggtac cggattagcc ggtgcggttt gcgtggagag ccatgcggcg acagaggtca
     2941 cgtcgtcgtc ggtcaggcgg gtagcgatct gttgcatgca gtcaggcgcg attgcgtggc
     3001 gcgagcccgc acgccaggcg ccaagctgcg cgctgatgta gtcggagtgc aatcccacga
     3061 gacccggaat agccggttgc atacccgtca ggttcgcgcc gtggcacgcc gcgcaggcgg
     3121 ggatgccgcg cccgacgtcg ccgttcagca cgatttgctg gcctttcgac aacgtggacg
     3181 ccgacacagt cggcttggcc ggctgcggat acggcggacg ttgttgggag aaatacgtgg
     3241 cgatctgatg aaggtagtcg tcggagagat acgtgacgag gtagttcatg ggcggatact
     3301 tccggcggcc ttcgcggaag ttctgcaact ggttgtacag gtagtcagcc ggcttgccgg
     3361 caagccgcgg gaaatagtcg ttgtccgtgc cttcgccgtg gacgccgtga catgccgtgc
     3421 aaccctgaac acgcgctgcc atggtgtccg gcgccattgg ctgggcggca gcttgagcgg
     3481 gcgccggagc ttctgctgcg ccggccaagc tggaggagcc gatcagcgcc agagccatta
     3541 gcggggcgag caacggacga aaaatgcgtc ttgaagacac gcgacactcc atgaatttcg
     3601 aggacctgcc gagcttcgtt cggcccggtg cgaatatgtg gtgaaccatt gccacattgg
     3661 ctctgggagc cctgatgcga cgcggcattc tatcatcgat gcctgatgat gactatttga
     3721 gcatcgccct gttgcgcggt cttttcaacg tgtacgcgac aatttgacgc gcgaccgatc
     3781 gacaggggtt tttgaccatg cgtaacagtt aacagtcagc ggtatttgac aaagtatcga
     3841 cgggtttcgt ggggttgggt gccggttttg tgtaactcgg atgcccttgg ggccatggtg
     3901 cattccacgt gcccgttccg ctagactcgc gttcctggcc cgtgcagttt gttgtgtttc
     3961 ttcttcgacc cttcatcgaa ccttcaatgc attccatgtt tgctttcagc ctgaatttct
     4021 ttgttgcggc gtgttcatga gtgacgatcc actgtggttc gctcaagtcc tcattgccgc
     4081 gattggtgac atcgcgtttg cctgcacgct tggcggggcg ttgctgagcg tgtggttatc
     4141 gaaggaaaac gcggccgcgc ccgtttcacc cgcgcgtctc ggctgggtga gggcgcggcg
     4201 gctgagcgca ggcggcgcgg tcgtgctcgc ggtggcagat cttgtgctgg tgtggatgca
     4261 ggcggcgtcg atgagcggtg cgcctctctt tcaagccttc gatgccgtcg tcaccgttgt
     4321 gaccggcacg cacgccggca cgggttgggc gatcgcgttc gccggcagcg tgctgctgat
     4381 cctggctacg gttttagcta aaccgaaggg cggaccgcgg gtcgggttgt tcgcgatcgg
     4441 cgcactcgta gcggcggccg gcaaggcgtc cgtaggacat gccgccgatg caggcgcgtt
     4501 ttcgctcgcc gaaggcgtgc agacggttca tctgctggcg acggccgtgt ggggcgggtt
     4561 ggttatcgcg agcgcgtggc gggtgttgcc ggcgctgggg acgtcgcttg cgcgggcgtc
     4621 cttgattcgt atttccggga aggtttccgc ggcggcggtg gttgccgtat cgctggtgat
     4681 cctcacaggg atatataacg cgtggcgcgg gctgggtgga tcggtggaag cgctcgaaac
     4741 gagcgggtgg ggccacgcgc tggtcgtgaa gggcgtgctg attgccaccg cgctgctact
     4801 cggtgcgatg aaccgatggt ccgtcatgcc gcgattgcag cgcaccgcat cgacagtcga
     4861 tgcgcacacg ttcacaggtg taatgcggat ggaagcgttg ctaattgtgg gggtgtttgt
     4921 cgcggccgcc gtgctgtcgc acagcgtgcc gggtttttct gcgatgggtt agtcaggctg
     4981 ccgagttcgg ctgcctgact cgggctaccc gatgccgata tctactcgta gcccagtttg
     5041 tgactcacga tcggcgcgca gaacagtgcc agcgcgcagc cgatcgcctt gccttgaagc
     5101 tcgacgaacg cgcgatgcga catgggcgac gacaacagca catcgaggag ttgcggcaag
     5161 caaaacagca cggccgcgcc gataaagcag cgcgtcaccg tcgacatgcg ccagccgtgc
     5221 tgggcgccca tgacggcccc gatcacgcgc agcacgccga acagaaccaa ggcgccgacg
     5281 gccatctgcg tgcggacgaa ttcatctgga agggtgtagt aatacatgct ggactctcta
     5341 gcttggtcgt tgcgctcttc ccgggcgctg ggtcgaaaca aacacacgta cgccagataa
     5401 tgcaagacgc gggccaggcg tcgtcaccgc atgcaaagcc tttcggcaca agggtttcat
     5461 gtaccgaaag gaagccgttt tcagccttgt aactgttggc ggatgaaact tgccggtacc
     5521 gcgttacgta acatgggtga cgtcgccgag acggaattcc cgcctcaacg acgctattct
     5581 acgatgcctt ccgcttctgc atagtgcggt gcaacgcaat tctcgtatca ccactctgca
     5641 acgctgccat ccgcatgacg ccacaccgga ttgcgccagc gatgcccaac cttggccatc
     5701 tcccgcacct tgtcctcatt cacctcgatg cccaagcccg gtccctgcgg aatcatcacc
     5761 atgccgtctt cgtatttgaa gacttcgggg ttcttgatgt aatcgagcag gtcgttgccc
     5821 ttgttgtagt gaatcccgag gctttgctcc tggatgaagg cgttgtagct gaccgcatcg
     5881 atttgcaggc aggtcgccag cgcgatcggg ccgagcgggc aatggagggc gagggcgacg
     5941 tcgtaggctt cggccatcga tgcaatcttg cggcactccg tgatcccgcc cgcgtgcgac
     6001 gcgtccggct ggatgatgtc gacgtaaccg cccgccagga tgtgcttgaa gtcccagcgc
     6061 gagtacaaac gctcgccgag cgcgatcggc gtgctcgtct ggttcacgat gtcgcgtaac
     6121 gcctcaacgt tctccgacaa caccggctct tcgataaata gcagcttgaa cgggtcgagt
     6181 tccttcgcga gcaccttcgc catcggcttg tgcacgcggc cgtggaagtc cacgccgatg
     6241 ccgatattcg gtcctaccgc ctcacgcacc gccgccacgt tattgatgac ggcctggact
     6301 ttgtcgaagg tatcgatgat ctgaagttct tccgaaccgt tcatcttcac cgccttgaaa
     6361 ccgcggtcca cgacggcgcg cgcgttgttc gcgacatcgc tggggcggtc gccgccgatc
     6421 cacgaataca ccttgatcct gtcgcggacc tggccgccga gcaacgcgtg aatgggcacg
     6481 ccgtgatgct tgcccttgat gtcccacagc gcctggtcga cgcccgcaat cgcgctcaag
     6541 ccgattgggc cgccacgata aaaacccgcg cgatacataa cctgccagtg atcttcgatc
     6601 agcagcgggt ccttgccgat caggtagtcc gacagctcat cgactgccgc cgccaccgtg
     6661 tgcgcacggc cttccaccac cggttcgccc cagccgacga tgccttcatc ggtcgtgatc
     6721 ttcaggaaac accagcgcgg cggaacgata aaagtctcga gtttggtgat tttcatgctg
     6781 gcgtctcctg atttttacag tgagtgggga acgagggttt ctatgttatc aaaagttggt
     6841 ttgatgtgta tattaatagt actattcgac gaaaaccctt gccgggaaag ggtccgtata
     6901 atcgcgtggt tttgattgct tagcgacaat cttaggaaag gggaaggata tccagcaaga
     6961 tctgcacgga cgcgtggcgt acgaccttgg taccgagatt ttgcgcggcg atttcccgcc
     7021 tgcgtctacg ttgccgcgcg aagccgaact gatggagcgt tttggcgtca gccggactgt
     7081 gctgcgcgag gcgctgcgga cgctgacatc gaagggattg attgaatcgc ggccgaggat
     7141 tgggacgcgc gtgcgaccgc ggcaggcctg gaatcttctc gatgccgacg ttctggaatg
     7201 gtattcgcgg gtcgccaagc cgttgcagtt cgcgataaa
//
LOCUS       DATGBK010000527         2414 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_284255, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000527 DATGBK010000000
VERSION     DATGBK010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284255"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1079
                     /locus_tag="VKJ77_07570"
     CDS             <1..1079
                     /locus_tag="VKJ77_07570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45164.1"
                     /translation="LDVAKGEFVSLLGPSGSGKTTTLMMLAGFESATQGEIRLNGKRL
                     DDKPPHQRDIGMVFQNYALFPHLTIEQNIAFPLSVRGIGKAEQKARVKRALEMVELPQ
                     LASRRPSQLSGGQQQRVALARALVFEPSVVLMDEPLGALDKRLRETMQYEIMRLHREL
                     GLTVVYVTHDQAEALTMSDRVAVFSDGRIQQAATPTELYENAHNAFVANFVGENNGLT
                     GRVLEQDTSWATLELPGGAVIRGRCGRGLRNGEEAMLALRPERAHIASADAAQNAADT
                     NVVSARVEELVYCGDHHRVHLKLGELGHGDNLIVKVPNTQHHDLPSLGSATAVAWRHD
                     DCKILATAASITRGPAPSFTAGVH"
     gene            1081..2145
                     /locus_tag="VKJ77_07575"
     CDS             1081..2145
                     /locus_tag="VKJ77_07575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC45165.1"
                     /translation="MKATLVRTGLTGIAGLTLVAASLFAASAHAADTISVVTFGGAYE
                     AAAKKAFFEPFTAATGIGFSTESYDGGLAKLSAMEQAKNPTWDLIDLESNDAITGCDE
                     GLLRKFDRKSLGNTSAFIPGSIMDCAVAAMVWSTVYAYDTTKLKTPPTTINDFFDLKK
                     YPGKRGLRKSPKVTLEWALLADGVKTADVYKVLGTPAGVDRAFKKLDTIKPSIVWWEA
                     GAQPPQLLSDGAVVMTQAYNGRIDDAVHKDHKPFESVWDGQVYDFEWWGIPMGAKNGD
                     AAAKFIVSASSAQSYADLTKYIAYAPPRKDAIPLIAKDRLNDLPTAPANFKHALQINA
                     SFWADNADQINKRFQVWLTQ"
     gene            2178..>2414
                     /locus_tag="VKJ77_07580"
     CDS             2178..>2414
                     /locus_tag="VKJ77_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45166.1"
                     /translation="MQEPAEREPATGFGADGRAAYARTRRRASAQALLLALPLLLFLL
                     ATFIAPIAILLSRSVENREVPVNLPALSQALKAWN"
BASE COUNT          499 a          759 c          739 g          417 t
ORIGIN      
        1 atctcgacgt ggcgaaaggc gaattcgttt cgctgctcgg accgtccggc tctggaaaga
       61 caaccacgct gatgatgctc gccggtttcg aatcggcgac acagggcgag atccgtttga
      121 acgggaaacg ccttgacgat aaaccgccgc atcagcgcga cattggcatg gtgtttcaga
      181 actacgcgct cttcccgcac ctcacgatcg aacagaacat cgcgtttccg ttgtcggtaa
      241 gaggcattgg caaagcagaa caaaaggcgc gcgtgaagcg ggcgctggag atggtcgagt
      301 tgccgcaact ggcttcgcgc cggccgtcgc agttgtcagg cggacagcag cagcgcgtcg
      361 ccctcgcccg cgcgcttgtg ttcgagccga gcgtggtgct gatggacgaa ccgcttgggg
      421 cactggacaa gcggctgcgc gaaaccatgc aatacgaaat catgcgactg caccgcgagc
      481 tgggattgac ggtggtttat gtgacgcatg accaggcgga agcgctgacc atgtcagacc
      541 gggtagccgt gttctccgat ggacgcatcc agcaggcggc aacccctacc gaactttatg
      601 aaaacgcgca caacgcgttc gtggcgaatt ttgttggcga gaacaacggc ttgacgggtc
      661 gggtgctcga acaggacaca agctgggcga cgctggaact gccgggcggc gcggtcattc
      721 gcggccgctg cgggcggggc ctgcgcaacg gcgaggaagc gatgctcgcg ttgcgtcccg
      781 agcgcgcgca catagcctct gctgacgccg cgcagaacgc cgccgacacc aatgtggtga
      841 gcgcacgcgt ggaagaactc gtgtattgcg gcgatcacca ccgcgttcac ttgaaactcg
      901 gggagcttgg tcatggcgac aacctcattg tcaaagtccc gaatacgcag caccacgatc
      961 ttccgtcact cggcagtgca accgccgtgg catggcgcca cgatgattgc aagattctcg
     1021 caacggccgc tagtattacc cgcggccctg ctccgtcctt caccgcagga gtccactgac
     1081 atgaaagcaa cactcgttcg aaccggtctg acgggcatcg ccggactcac ccttgtagcg
     1141 gccagcttgt tcgccgccag cgcgcatgcg gccgatacca tctcggtcgt gaccttcggc
     1201 ggcgcttacg aggccgcggc gaagaaagcg ttcttcgaac cgttcacggc agccaccggt
     1261 atcggcttct cgactgaatc gtacgatggc ggcctcgcca agctatcggc catggaacag
     1321 gccaagaacc cgacatggga cttgatcgac cttgaatcca acgacgccat caccggttgc
     1381 gacgaaggcc tgttgcgcaa gttcgatcgc aaatcgctcg gcaacaccag cgccttcatc
     1441 cccggttcga tcatggattg cgcagtagcc gccatggtct ggtcgaccgt gtacgcctac
     1501 gacacgacca agctcaaaac cccgccgacc acgatcaacg atttcttcga cctgaagaaa
     1561 taccctggaa aacgcggctt gcgcaagtcg ccgaaggtga cgctcgaatg ggcgctgctc
     1621 gccgacggcg tgaaaaccgc cgatgtctac aaggtgctcg gcacgcccgc cggcgtcgac
     1681 cgcgcgttca agaaactcga cacgatcaag ccgagcattg tctggtggga agccggagcg
     1741 caaccgccgc agttgctctc cgatggcgca gtggtcatga cgcaggccta caacgggcgc
     1801 attgacgacg cagtgcacaa ggaccacaag ccgttcgaat ccgtgtggga tggccaggtc
     1861 tatgacttcg aatggtgggg cattccgatg ggcgcgaaga acggcgacgc cgcggccaag
     1921 ttcatcgttt ccgcctcgag cgcgcaaagc tacgcagacc tgacgaagta cattgcttac
     1981 gcgccgccgc gcaaggatgc gattccgctg attgcgaagg atcgcctgaa cgacttgccg
     2041 acggctcccg ccaacttcaa gcacgcactg cagatcaacg cgagcttctg ggcggataac
     2101 gccgaccaga tcaacaagcg cttccaggtc tggctgacac agtaaggcaa cccgtgaccg
     2161 tgacagtgac cagcaatctg caggaaccgg ctgaacgcga acccgccacg ggcttcgggg
     2221 ccgacggccg cgcggcgtac gccaggacgc gtcgccgggc gtcggcccag gcgctcctgc
     2281 ttgcgctgcc gctgttgttg ttcctgctcg ccaccttcat tgcgccgatc gcgatcctgc
     2341 tctcgcgcag tgtcgagaat cgcgaggtgc cggtgaatct gccggcactg tcacaggcgc
     2401 tcaaggcgtg gaac
//
LOCUS       DATGBK010000528         1548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_261261, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000528 DATGBK010000000
VERSION     DATGBK010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261261"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..368)
                     /locus_tag="VKJ77_07585"
     CDS             complement(<1..368)
                     /locus_tag="VKJ77_07585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006159125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC45167.1"
                     /translation="MRARTLGVAIAALLTVNGVARAQISDDAVKIGVLTDHSGGFAYL
                     VGKHSVEAAQMAVDDFGGKVLGKPIAVVTADHQNKPDIAATLSRKWFDTEGVDAITDV
                     AGSAVALATQEIARSRNKIL"
     gene            complement(410..>1548)
                     /locus_tag="VKJ77_07590"
     CDS             complement(410..>1548)
                     /locus_tag="VKJ77_07590"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018006001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HMC45168.1"
                     /translation="SDPGMMGRASGLERLSFSESGRKLYCRDGAAKRVGDVVRNSDYA
                     NTLRMIAEGGSDVFYKGELAQTIARDMREHDGLITLEDLAAYQPKWLEPLRGTYRGYD
                     VTTNNPPGGGLMLVEMLNILEHFDLADIGHNSAEYLRVVCEAMKRATVDKDNSIGDPA
                     FFDVPVTHLASKEYAAEMAREIAARTKRDVPRLNSGFPSKDTTQVCVVDRDGNCVTMT
                     HSLGMPSGVITDGLGFFYNGCMAVFDPRPGRAGSIVPGKARFTSVCPSIFFRDGKPYL
                     VIGAPGATQIAMGVLQATLNVLDFGMTMTEAVSAARFSATSNAIDVSNRIPYGVTQQL
                     EADGYEVIRSPYTFGFAAVHGIRLGKNGFDGGADPGHDGIALAV"
BASE COUNT          302 a          503 c          451 g          292 t
ORIGIN      
        1 aaaagtatct tgttgcggga tcgtgcgatt tcctgcgttg cgagcgccac ggcagagccg
       61 gcaacgtcgg tgatcgcatc cacaccttcg gtatcgaacc acttgcggct gagcgtcgcc
      121 gcgatatcag gcttgttctg atgatcggcc gtgacgacgg cgatcggctt tccgagaacc
      181 ttgccgccga agtcgtccac cgccatctgc gccgcttcca cggaatgctt gccgaccagg
      241 taagcaaagc cgcccgagtg atcggtgagc acgccaatct tgacggcgtc gtcggaaatc
      301 tgcgcacgag ccacgccatt cacggtcaac aaggccgcaa tggccactcc aagcgttctc
      361 gctctcaaga tcgttctcct gctgaaattc atttgcgtcg tgaaattgct caaaccgcca
      421 acgcgattcc gtcatggccc ggatcggcgc cgccgtcgaa gccgttcttg ccaaggcgaa
      481 tgccgtgcac ggcggcgaat ccgaacgtgt aagggcttcg gatcacttcg tagccgtcag
      541 cttcgagttg ctgcgtcacg ccgtagggaa tccgattgga aacatcgatc gcattgctcg
      601 ttgccgagaa gcgcgccgcg ctcaccgcct cggtcatcgt catgccgaaa tcgagcacgt
      661 tgagggtcgc ctgcaatacg cccattgcga tctgcgtggc accgggcgca ccgatgacga
      721 gatacggctt gccgtcacgg aagaagatcg acgggcacac cgacgtgaac cgcgccttgc
      781 cgggcacgat actgccggcg cggcccggcc gcggatcgaa gaccgccatg cagccattat
      841 agaaaaaacc gagcccatcc gtgatgacgc ccgacggcat gccgagtgag tgagtcatgg
      901 tgacgcaatt gccgtcgcga tccaccacgc atacctgcgt cgtatccttt gacggaaagc
      961 ccgaattcaa ccgcgggaca tcgcgcttgg tccgcgccgc aatctcccgc gccatctccg
     1021 cggcatattc ctttgacgcg agatgcgtca ccggcacatc gaagaaggcc gggtccccga
     1081 tggaattatc cttgtcgacg gtagcgcgct tcatcgcttc gcaaacgacg cgcagatact
     1141 cggcgctgtt gtgtccgatg tcggcgagat cgaagtgctc gaggatgttg agcatctcga
     1201 ccagcatgag cccaccgccc ggcggattgt tggtcgtgac gtcgtagccg cgataggtcc
     1261 cacgcagcgg ctccagccat ttcggctgat aggctgcgag atcctccagc gtgatcaggc
     1321 cgtcatgctc gcgcatgtcc cgtgcaatcg tctgcgcgag ttcgcccttg tagaaaacat
     1381 cggagccgcc ctcggcgatc atccgcagcg tattggcata gtccgagttg cgaacgacat
     1441 ccccgacccg cttcgccgcg ccgtcgcggc agtaaagttt gcgtcccgac tcggagaagg
     1501 acaaccgctc aagccccgac gcgcgcccca tcatgccggg atcggacc
//
LOCUS       DATGBK010000529         1667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_214825, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000529 DATGBK010000000
VERSION     DATGBK010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214825"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VKJ77_07595"
     CDS             <1..181
                     /locus_tag="VKJ77_07595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45169.1"
                     /translation="GDALSVVPGDVPSAADAVAGLLLDAPRRARMGEVGKQRMGGPGG
                     ARAIAAAIAELGRAW"
     gene            211..1386
                     /locus_tag="VKJ77_07600"
     CDS             211..1386
                     /locus_tag="VKJ77_07600"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HMC45170.1"
                     /translation="MYAIIPLYGTFSIFAPHPPTAPLVPRPIVIAIVALLVLAMAGAT
                     IGAIRRRQPQAMHVVLLVNVVATYTGAIFGFDPVVGFFLIASGCAGCVATHFSLIAYY
                     RAARAAHAIYFALLLSGACASLLAIGLVALKYPADLYAFDHGRAVGMFLNPNELAAYL
                     LAYLGVSCGIAMVRRGTPIGNLAAVCSVLGVVALTLTFSRMAVIAAFCGLAFYMLVMR
                     PRRGLIATIVVFVLAAGFNVALAARHHDPQDTGIRGVAWRAGITTFAHFPLTGVGPLA
                     FERLYPVMRAPDAPGPETPVAYDPHSLPLSIAAETGAFGLAAFVLIWWCFARAFRRAF
                     VAATGERRILGAAILAGIIALLVHALINSVSVAFPLILQFTALALAATYWGFDPHEA"
BASE COUNT          212 a          522 c          559 g          374 t
ORIGIN      
        1 gggcgacgcc ttgtccgttg tgccgggtga cgtgccgtct gcggccgacg cggtggctgg
       61 gctactgctt gatgcgccgc gccgcgcgcg catgggtgag gtcggaaaac agcgtatggg
      121 cggcccgggt ggagcgcgcg cgattgcagc ggcaatagcc gaactcgggc gcgcatggta
      181 gaccggtttg ttatcgcatc actcgctgcg atgtatgcga tcatcccgct gtacggcacg
      241 ttctcgatct tcgcgccgca tccgccgacc gcgccgcttg tgccgcgccc gattgtcatc
      301 gcgatcgtcg cgctcttggt ccttgcgatg gcgggcgcaa cgatcggtgc gattcggcgc
      361 aggcagccgc aggcgatgca cgtcgtgtta cttgtcaacg tcgtggcgac ctatacgggc
      421 gcgatcttcg gattcgatcc ggtggtgggt tttttcctga tcgcatcggg ctgcgcgggt
      481 tgcgtcgcga cgcattttag cctcatcgcg tactatcgcg ccgcgcgcgc ggcgcacgcg
      541 atctattttg cgctgctgct gtcgggtgcg tgtgcttcgc tgttggcaat tggcctggtt
      601 gccctcaagt atccggccga cttatatgcg tttgatcatg gtcgcgcggt cggaatgttt
      661 ctcaatccca acgaacttgc ggcgtatttg ctggcgtatt taggcgtatc gtgcggcatc
      721 gcgatggtgc ggcgcgggac gcccatcggc aaccttgctg cggtgtgcag cgtgctgggc
      781 gtcgtcgcct tgacgctaac gttttcgcgc atggcggtga tcgcggcgtt ttgcgggctc
      841 gccttttaca tgcttgtcat gcggccccgg cgcggcctta tcgcaacgat cgttgtcttt
      901 gttttggcgg cgggctttaa cgtcgcgctg gccgcccggc atcacgatcc acaggatacg
      961 ggcattcgcg gcgtcgcctg gcgggcgggc atcacgacgt tcgcgcactt tcccctcacc
     1021 ggcgtcggac cgctggcgtt cgagcggctc tacccggtta tgcgcgcgcc cgatgccccg
     1081 gggcccgaaa cgccggtcgc gtacgacccg cactcgctgc ctctttcgat cgctgcggaa
     1141 accggcgcgt tcggcctggc tgccttcgtt ctgatctggt ggtgcttcgc gcgcgccttc
     1201 cgtcgagcgt tcgttgcggc gaccggcgaa cgacgaatcc tgggtgcggc gatcctcgcg
     1261 ggtatcattg cgctgctcgt gcacgcgctc atcaattccg tgagcgtggc gtttccactc
     1321 atcctgcaat ttacggcgct cgcacttgcc gcgacgtatt gggggttcga tccccatgaa
     1381 gcctaggatc gctcgtcagc cacgccgaca cgattgccgg cgggcggggt agagcagagt
     1441 ggaggcggac agtatgttct ttattagggt ctggtttgcc gggctgcttg tagtggtgac
     1501 ggcttgtgcc cctccctcgc gtcaggcggc ggaggtttcg ccgagccccg gcgcatcatc
     1561 gctcggggcg aaagcaacgc cgacgcccgt cccgggtcgc gccacccaga atagcggcgg
     1621 tggcaaatac gtcacgctta gcgagtcgac ccttgacccc ggttcct
//
LOCUS       DATGBK010000530         2692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_284348, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000530 DATGBK010000000
VERSION     DATGBK010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284348"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VKJ77_07605"
     CDS             <1..218
                     /locus_tag="VKJ77_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HMC45171.1"
                     /translation="TGQLLLTMAFRQADASALAPYNYTSIVWAAIFGYVVWGETVGTL
                     SLIGILLIVGSSILVAIRSKQADGPLV"
     gene            complement(240..866)
                     /locus_tag="VKJ77_07610"
     CDS             complement(240..866)
                     /locus_tag="VKJ77_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HMC45172.1"
                     /translation="MVSLQLLLVFIGALAVVYALPGPDMALILQGSSSHGLKHGLSTA
                     AGLAIARSLHVTLSALGVAALLRNAPWLYDGVRIAGALYLAYVAIQIFRSPAFGLDNN
                     MTSKTRPPLRAALSKGVLGNLLNPKALLFCSVLLPQFVRPDAGAVWSQVFELGVVLVV
                     FGAIFDTTLAFSAVRLSRWLRIHPRAQVVQRWTFSVALLAFALRLSID"
     gene            complement(984..1358)
                     /locus_tag="VKJ77_07615"
     CDS             complement(984..1358)
                     /locus_tag="VKJ77_07615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4406 domain-containing protein"
                     /protein_id="HMC45173.1"
                     /translation="MTPQLILIAGPYRSSTNGNAALIAGNLHRLEEAALQVYRLGHMP
                     MIGEWVALPLAAAAGSKAVGDPISETFLYPVANRLIRQCNAVYRIEGASQGADADVRL
                     AEELGLPVYRSTGDIPVAAATA"
     gene            complement(1370..1954)
                     /locus_tag="VKJ77_07620"
     CDS             complement(1370..1954)
                     /locus_tag="VKJ77_07620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014897829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HMC45174.1"
                     /translation="MVATKDRVRIIDTTVLSDDWYVLKKTTFDFQRRDGVWQRQSRET
                     YDRGNGATILLFNRDRRTVVLTRQFRLPAFVNGHDGMMIEAAAGLLDNATPEERIRAE
                     AEEETGYRVDNVQKVFEAYMSPGSVTEKLHFFIADYDASTRVGHGGGVEAEGEDLEVI
                     ELTLDDALDAVRRGEIVDAKTIMLLQFAALNAVL"
     gene            2038..>2692
                     /locus_tag="VKJ77_07625"
     CDS             2038..>2692
                     /locus_tag="VKJ77_07625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010091630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HMC45175.1"
                     /translation="MLTSQRKKAILKTLARDGQVLAKQLSVSFGVSEDTVRRDLRELA
                     GEGLLQRVHGGALPASTAVAPFAERRGLESTAKRAIATAAAAMIETGQVVIIDGGTTS
                     AELIRQIPHDLSATVVTHSPSVAVGLVDHALIEVIVIGGRLFKHSIVTVGAAAVEAMS
                     HIQADIYFMGVTGVHPTAGLSTGNFEEAFVKRALAARAAETVVLASSDKINAASQYVI
                     "
BASE COUNT          552 a          827 c          802 g          511 t
ORIGIN      
        1 gcactgggca attgctgttg accatggcgt tccgacaagc cgatgcgagc gcgctcgcgc
       61 cgtataacta caccagcatt gtctgggccg cgatctttgg ttatgtggtc tggggagaga
      121 cagtcggcac gttgtcgctg atcggcatcc tgctgattgt cggcagttca atactggtgg
      181 cgatcaggag caagcaagcc gacggcccgc tggtttaatc aagcgagccg aaggccgtct
      241 taatcgatcg acaacctcaa cgcaaacgcc agcaaggcaa ccgagaacgt ccagcgttgc
      301 acgacctgag cgcgcggatg aatgcgcaac cagcgcgata accgtacggc ggaaaacgcg
      361 agtgtcgtgt cgaagatcgc accgaaaacg accaatacca cgcccagttc aaaaacctgt
      421 gaccagactg cgcccgcgtc gggacgcacg aattgcggca gcaggaccga gcagaacagc
      481 agcgctttgg gattgagcag attgcccagc acgcccttcg acaacgcggc gcgcagcggc
      541 gggcgcgtct tcgatgtcat gttgttgtcg agaccgaacg ccggcgagcg aaaaatctgg
      601 atcgccacgt acgcgagata taacgctccg gcaatacgaa cgccgtcata aagccacggc
      661 gcgttgcgca gcagcgccgc gacgccaagc gccgacaacg tcacgtgcag actgcgagca
      721 atcgccaggc cggcagcggt cgacagtccg tgcttcaagc catgcgacga actaccctgc
      781 aggatgagcg ccatgtccgg gccgggaagc gcatacacga ccgcgagggc cccgataaag
      841 acgagcagca attgcagcga gaccatgatc caacctccat ttcgaaggct tgatattgcc
      901 gctagtcgat gagcgttttc tggcgtagtt gtgtctgttt tgaagcttgg ttaggggaaa
      961 acaccaaggt gcaggtacgc atgctacgca gtcgccgcag ccacgggaat atcccccgta
     1021 cttctataaa ccggcaagcc gagttcttct gccaggcgga catcggcatc ggcgccttgg
     1081 gacgcgcctt cgatgcgata caccgcattg cattgcctta tcaagcgatt cgcgaccggg
     1141 tacaagaacg tttcgctgat cggatcgccc accgctttgg agcctgccgc agccgctagc
     1201 ggaagcgcta cccactcgcc gatcatcggc atatgtccga gccggtagac ctgcaatgca
     1261 gcctcttcaa gccgatgaag attgccggca atcaacgcgg cattcccatt ggtgctgctg
     1321 cgatacggtc ccgcgatgag tatcagttga ggtgtcacga cacactcctt taaagcacag
     1381 cgttcaaagc ggcgaactgc agcagcatga tggttttcgc atcgacaatc tcgccacgac
     1441 gcacggcatc cagcgcatcg tcgagcgtca attcgatcac ttcaaggtcc tcgccctccg
     1501 cctccacgcc accgccgtgc cccacgcgcg tcgaagcgtc gtagtcggcg atgaagaaat
     1561 gcagcttctc cgtgaccgaa ccggggctca tgtacgcttc aaaaaccttc tgcacgttgt
     1621 ccacccggta tcccgtttcc tcttccgctt cggcgcggat tcgctcctca ggtgttgcgt
     1681 tgtcgagcag tccggcggcc gcctcgatca tcatgccgtc gtggccattg acgaacgcgg
     1741 gcagcctgaa ctgccgggtc agcacaacgg ttctccggtc gcggttgaac agcaggatcg
     1801 tcgccccgtt accccggtcg taggtctcgc ggctctgacg ctgccacacc ccgtcgcgtc
     1861 gctggaagtc gaatgtcgtc ttcttcagca cgtaccagtc gtcggacaga acggtcgtat
     1921 cgataatgcg aaccctgtct ttcgtcgcca ccatctcgtc agctccatat cgcgcaaaag
     1981 gagcagtcat ggtatcgtgc agattcgtgc aatatcaaga tatttcgtgc aaacaccatg
     2041 ctgacctctc aacgcaagaa agcgatcctc aagaccctgg cgcgtgacgg acaagtgctc
     2101 gccaagcagc tcagcgtgtc gttcggggta tcggaggaca cggtgcgacg cgacctgcgc
     2161 gagttggcgg gcgagggctt gctgcaacgc gttcacggcg gcgcgctgcc cgcttccacg
     2221 gccgtggcgc cgttcgccga gcggcggggc ttggagtcga cggccaagcg cgcgatcgcg
     2281 acagcagcgg cggccatgat cgaaaccggg caggtggtga tcatcgatgg cggcacgact
     2341 tccgctgagc tcatccgcca gatcccgcac gatttatcgg ccacggtggt gacgcatagc
     2401 ccgagtgttg ccgtcgggct ggtcgatcat gcgttgatcg aggtgattgt catcggtggc
     2461 cggttgttca agcattcgat cgtgacggtc ggcgccgccg ccgttgaagc gatgtcgcat
     2521 atccaggccg atatctattt catgggcgtg accggcgtgc atccgaccgc gggcttgagc
     2581 accggcaatt tcgaggaagc gtttgtgaag cgcgcgctcg ccgctcgcgc ggcggaaacg
     2641 gttgtgctgg cttcatcgga taagatcaac gccgcgtctc agtacgtgat cg
//
LOCUS       DATGBK010000531         1992 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_122240, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000531 DATGBK010000000
VERSION     DATGBK010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122240"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VKJ77_07630"
     CDS             <1..595
                     /locus_tag="VKJ77_07630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014253081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HMC45176.1"
                     /translation="TLPADAELQITATDGFVTNLPAALVHGDSGHGATPWLAIEPQDK
                     RWPRTSKGADVGPFYLVWINPGASGVMSEQWPYQINAIRVVASRAAKWPQLAVDDSVP
                     ANSPVRRGQTLFATQCMVCHRMNGAGDASVGPDLNLPRNPTEYFQAWALRAYIRDPKS
                     IREWSGMKMPGFDKANLSDPDLDAIIAYLGYMAHRRK"
     gene            753..1238
                     /locus_tag="VKJ77_07635"
     CDS             753..1238
                     /locus_tag="VKJ77_07635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45177.1"
                     /translation="MLVKTTRILVAAAAVIAVTIGSIGSAQAGTLAAPAGTHFIEEMK
                     TLQPQLNLSTTQQTAYDVAMDTMRQSHVTARMNEDQLQQQFQSAQQTPILDLRAIHAA
                     NLKVEQEDAQAREQSANAWITFYDGLNNSQKTAVSSLLKQQFAAIQNHPGKPYEPRTG
                     L"
     gene            complement(1356..>1992)
                     /locus_tag="VKJ77_07640"
     CDS             complement(1356..>1992)
                     /locus_tag="VKJ77_07640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016834536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45178.1"
                     /translation="PASDIPPVVQDDLTSAQRYAIVLRNWKLYITGLAIGFQNAARYA
                     LVVWVPVHFLGMDWKTSSALIDPKWITVALPVGMALGSLSNSWISDVLFQGRRYVAIV
                     WYMVLASTTAIFMMFVPHASMLAIGLLFLCGFFVFGPASSFWALCPDIFGRRVAGTAT
                     GVLNTMSYIFAGIGEPVIGHMIDSTGNTSIIFPIVAGLCAASAVMSMLIKR"
BASE COUNT          467 a          589 c          560 g          376 t
ORIGIN      
        1 aacattgcct gccgatgccg aattgcaaat caccgcaacc gatggcttcg tcaccaacct
       61 gcctgcggcg ctcgtgcacg gtgatagtgg tcacggtgcg acgccgtggc tcgcaatcga
      121 accgcaggac aagcgctggc cgcggacgtc gaagggtgcg gatgtcggtc cgttctatct
      181 cgtgtggatc aatccgggcg catcgggtgt gatgagcgaa cagtggccgt accagatcaa
      241 tgcgatccgt gtggtggcgt cgcgcgcggc gaagtggccg caactcgccg tggatgacag
      301 cgtgccggcg aactcgcccg ttcgccgcgg acaaacgctc ttcgcgacgc agtgcatggt
      361 ttgtcatcgg atgaacggcg caggcgacgc gtcggttggc ccggatctga accttccgcg
      421 taatccgacc gagtactttc aggcgtgggc actaagggcc tatattcgcg atccgaaatc
      481 aatccgggaa tggtccggca tgaagatgcc aggcttcgac aaagctaacc ttagcgatcc
      541 cgacctcgac gcgatcatcg cttatctggg ctacatggcg cataggcgta agtagcttgg
      601 cacgtagcga aggcctgcga tgcgccgact gaggccacaa caccaccgct cattcttctc
      661 taattgttgg tcgttacgat tcgttgcatg gattcggcag caagcatttc ttgccagttc
      721 agatcaacga ctaaaccatc aggagaagca tcatgttagt gaagacaacg cgcattctcg
      781 tcgcagccgc tgccgtaatc gcagtgacca ttggatcgat cggatcggcc caggccggca
      841 cgctcgccgc gccggcgggc actcatttca tcgaagaaat gaagacgttg cagccgcagc
      901 tgaacctcag caccacgcaa cagacggctt atgacgttgc catggacacc atgcgtcaaa
      961 gccatgtcac cgcgcggatg aatgaagatc aacttcagca acagttccaa tcggcgcagc
     1021 aaacgccaat tctcgatctg cgcgctattc atgccgcgaa cctgaaggtg gaacaagagg
     1081 atgcgcaggc acgcgagcag tcggccaatg cgtggatcac cttctacgac ggcttgaaca
     1141 acagccaaaa gactgcagtc agttcgctgc tcaaacagca atttgccgcg attcagaatc
     1201 atcccggcaa accttatgaa ccgaggaccg gcttgtgatc gctgttggtc ctttacgacg
     1261 cgcaaactcg ctcgtgcaca gctttatgca gttctcgacg cgcagcgagc gcgtcaggtt
     1321 tgtttcgcca aagcggcctg cgatattcga ctcgatcagc gcttaattag catcgacatg
     1381 accgcgctcg ccgcgcacag tcccgcgaca attggaaaga tgatcgacgt attgcccgtt
     1441 gaatcaatca tgtggccgat gaccggctcg ccaatgcccg cgaatatata ggacatggtg
     1501 ttgagaacgc cggtcgcagt ccccgcaacg cgacggccaa aaatgtccgg acagagcgcc
     1561 cagaacgatg acgccgggcc gaagacaaaa aatccgcaaa ggaacagcag gccaatcgcg
     1621 agcatgcttg cgtgcggcac gaacatcatg aagatcgccg tggtcgacgc cagcaccatg
     1681 taccagacga tcgcgacata gcgcctcccc tgaaacagca catcggaaat ccagctgttc
     1741 gatagtgagc caagcgccat gcctacaggc agcgcaaccg tgatccactt cggatcgatc
     1801 agcgctgatg aagtcttcca gtccatgccg agaaaatgga ccggcaccca gacgaccaat
     1861 gcgtatcgtg cggcgttctg gaaaccgatg gcaagcccgg tgatataaag cttccagttt
     1921 cgcagcacga ttgcgtatcg ctgtgcgctc gtcaaatcat cctgcacaac cggcgggatg
     1981 tcactggcgg gt
//
LOCUS       DATGBK010000532         2848 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_237922, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000532 DATGBK010000000
VERSION     DATGBK010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237922"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..723)
                     /locus_tag="VKJ77_07645"
     CDS             complement(109..723)
                     /locus_tag="VKJ77_07645"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003277887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HMC45179.1"
                     /translation="MSRWIDPVTLEGRYVRLVPLEREHQDALANAATDGELWKLWYTS
                     VPSPETIAAWMDTALAMRDSAGAQPFTIIDARTGDVVGSTRYMNVEAAHRRLEIGSTW
                     YAKRVQRTAINTEAKLLLLSHAFDTLKTIAVEFRTHFMNRQSRAAIARLGAKEDGILR
                     NHQIGRDGIYRDTVVFSIIESEWPAVRANLRAKLEARFDLPLDS"
     gene            complement(737..1579)
                     /locus_tag="VKJ77_07650"
     CDS             complement(737..1579)
                     /locus_tag="VKJ77_07650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004186676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HMC45180.1"
                     /translation="MRFEGSSQYVATDDLKLAVNAAITLQRPLLIKGEPGTGKTMLAE
                     EVAAALGMPLLQWHIKSTTKAQQGLYEYDAVSRLRDSQLGDERVKDIRNYIVKGVLWQ
                     AFDADEPGVLLIDEIDKADIEFPNDLLRELDRMEFYVYETHELVKAKHRPLVIITSNN
                     EKELPDAFLRRCFFHYIKFPEPTTMKQIVEVHFPGIKQELLAAAMQSFFELRNVSGLK
                     KKPSTSELLDWLKLLLAEDIGPEALRSTDQKQVIPPLHGALLKNEQDLSLFERLLFMN
                     RNNR"
     gene            2014..2379
                     /locus_tag="VKJ77_07655"
     CDS             2014..2379
                     /locus_tag="VKJ77_07655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017331500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HMC45181.1"
                     /translation="MNKFVGKCAVIAALSGLAGFATQASADVVGNAKAAQGKVAMCIG
                     CHGIPGYRTAYPEVYRVPMLGGQSARYIENALHAYKKGDRHFETMHGIATTLSDQDIA
                     DIAAYYAAQTPSSKNNPDK"
     gene            2460..2840
                     /locus_tag="VKJ77_07660"
     CDS             2460..2840
                     /locus_tag="VKJ77_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HMC45182.1"
                     /translation="MKALDTVFKTACTAAALIGAIGVLAMQPAHAADASNGKVLTEAH
                     NCAACHGPNLNKPVSADYPKLAGQHADYLYWALRQYQMGNGNPNFGRNNPIMAAQVQS
                     LSQSDLKDISAYIESLDGDLVVKK"
BASE COUNT          570 a          844 c          865 g          569 t
ORIGIN      
        1 gtcaggtatt ccttgaccga aaccggtagc ttggcgccgc gcagagaata gaaaaagtcg
       61 atcagcatgc cgggctcctt gccccaatct gtcgcgctat gagttgcgct atgagtcgag
      121 cggcaagtcg aaccgcgctt cgagtttcgc gcgcagattc gcgcgcacgg cgggccactc
      181 ggactcgata atcgaaaaca ccacggtatc gcggtaaatg ccgtcccggc cgatctggtg
      241 attgcgcagg atgccgtctt ccttcgcccc cagccgcgca atagccgcgc gcgattgacg
      301 gttcatgaag tgagtccgga actcgacggc gatggtcttt agcgtatcga acgcatgcga
      361 aagcaggagc agcttggcct cggtgtttat cgccgtgcgc tgcacgcgtt ttgcgtacca
      421 cgtgctgcca atctcaagcc gccgatgcgc cgcctcgaca ttcatataac gcgtgctgcc
      481 gaccacgtcg cctgtccttg catcgatgat ggtgaacggt tgcgcgcccg ctgagtctcg
      541 catggcgagc gccgtgtcca tccatgcggc gattgtctcg ggcgagggga cgctcgtgta
      601 ccagagcttc cacaactcgc cgtccgtggc ggcgttggcg agcgcgtcct ggtgctcgcg
      661 ctcgagcggc acgagtctca catacctgcc ttccagcgta accggatcga tccagcggct
      721 catacgtgca gccctttcag cggttgttgc ggttcatgaa cagcaggcgc tcgaacaggc
      781 tcaggtcctg ttcgttcttg agcaacgcgc catgcaacgg cgggatgact tgtttctgat
      841 cggtggagcg cagcgcttcc gggccaatat cctcggccag cagcagcttc aaccaatcga
      901 gcaattccga tgtcgacggt ttcttcttca ggcccgacac attgcgcaac tcgaagaaac
      961 tttgcatcgc ggcggcgagc agttcttgct tgatgccggg aaaatgcacc tcgacgatct
     1021 gcttcatcgt cgtgggttcg gggaatttga tgtagtggaa aaagcagcgg cgcaggaacg
     1081 cgtccggcag ttctttctcg ttgttcgacg tgatgatcac caacggccgg tgcttcgctt
     1141 tcaccagctc gtgggtctcg tatacataga attccatccg gtcgagttcg cgcagcaagt
     1201 cgttcgggaa ttcgatgtcc gctttatcga tttcgtcgat cagcagcacg ccgggttcat
     1261 cggcatcgaa agcctgccac agcacaccct tgacgatgta gttgcggatg tccttcacgc
     1321 gttcgtcgcc gagctgggaa tcgcgcaggc gcgacaccgc gtcgtactcg tagaggcctt
     1381 gctgggcctt cgtggtcgac ttgatgtgcc attgcagcag cggcatgccg agcgcggcgg
     1441 cgacttcctc ggccagcatg gtcttgccgg tgccgggctc gcccttgatc aggagcgggc
     1501 gctgcagggt gatggcggcg ttgacggcga gcttgagatc gtcggtggcg acgtattgcg
     1561 atgaaccttc aaaacgcatg acgcgtccct cggagaagga aaaattgcag tataagtcag
     1621 aagggttttg ggggcgtcac gccctgaaac gccgccggtc gggctaaccc aggctgattg
     1681 agcctagccg agcccaatcg cgtccgttgt tgccaaagga gaagcaaatg tccatcggac
     1741 agattgtcgc agtcccctgg accctaggcg gcgcggcctt gtgcgatggg gccgacccgc
     1801 tgcggccggt ggacgcaggg taggtcgcgc ggtacaatta gcgcgatttt tttggcccgc
     1861 gtggctggaa accggatcag cgctgcaagg tacgatgcac cgagactatt cagtgcaaat
     1921 attcagtgcg cgtccgtttg accagtcccg agaaagtccc ggaacgccag gcgtccaagg
     1981 tgccggaatt cccctcatgc caggttagaa gctatgaata aattcgtcgg caaatgtgcc
     2041 gtgatcgcag cgctgtcggg gcttgccggc ttcgcgacac aggcatccgc cgatgtcgtg
     2101 ggcaacgcga aagcagccca gggcaaggtt gcgatgtgta tcgggtgcca cggcattccc
     2161 ggttatcgca ccgcgtatcc cgaggtgtac cgggttccca tgctcggcgg ccagagcgcc
     2221 cgctacattg agaacgcgct gcatgcctac aagaagggcg atcgccattt cgagacgatg
     2281 catggcatag cgaccacgct gtccgatcag gatatagcag acattgctgc gtattacgcc
     2341 gcgcaaaccc cctcttcgaa gaacaatccc gacaagtgat ccgcgctgcg cccgaatctg
     2401 atcgtaagac tcacgggcgc ccgtcacccg gtaatcacta atcgcggata ggagaattca
     2461 tgaaggcact cgacacagtg ttcaagacag catgcacggc agccgcgctg atcggcgcaa
     2521 tcggcgttct agccatgcag ccggcgcatg cagccgatgc aagcaatggc aaggtgctca
     2581 ccgaggccca caattgcgcg gcctgccacg gcccgaacct gaacaagccg gtgagcgcgg
     2641 actatccgaa gctcgcaggc cagcacgccg actatctcta ctgggcgctg cgccagtacc
     2701 agatgggcaa cggcaatccg aacttcgggc gtaacaaccc gatcatggcc gcgcaggtac
     2761 aaagcttgtc gcaaagcgac ctgaaagaca tttcggcgta tatcgaatcg ttggacggcg
     2821 atctggtcgt gaagaagtaa gcattgcc
//
LOCUS       DATGBK010000533         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_145254, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000533 DATGBK010000000
VERSION     DATGBK010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145254"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VKJ77_07665"
     CDS             <1..901
                     /locus_tag="VKJ77_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45183.1"
                     /translation="QGRFFGLLDGGRGLIEALLATVALVIFATATEKHGLPTDVGFKY
                     VVYLYSGVCIALGLLMALVKEPPATAQEQQQAADNLKQKHSLWRDLLTLMRIPQLWLM
                     AAIVFCGYQIFWATYSFSAYLQVGDLKMTVVMAGTLTTLKLWMRPIGGIGGGYLGDRF
                     STLGVLTSALFLAALGLVALVVLPTLGHIDPRAGVAMIAVVVLLIGILTYAIRGLYWS
                     LLDQCGIPLRITGLAIGLVSLIGYSPDVFLPLVNGWTTEHFPGLLGYQFYFSYIAAIS
                     VIGGIAALALKRMRTTVAKDALQ"
     gene            898..>1689
                     /locus_tag="VKJ77_07670"
     CDS             898..>1689
                     /locus_tag="VKJ77_07670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016969212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HMC45184.1"
                     /translation="MKIVSLETHFVAVPPPHLGGMYWIFVKLKTACGIEGVGEIYSAT
                     FHPKAMAHIIDDVFGRYLQDHDPHHVERFFREAYSSGFTQRPDLTMMGVVSGLEMACW
                     DIIGKAADKPVYELLGGLVNERLRSYTYLYPKNAAGEYDYDDVDLAAECAVQNADRGF
                     TAVKFDPAGPYTAYSGHQLSLDVLERCETFCKRIREAVGNRCDLLFGTHGQMVPSSAI
                     RLAQRLEKYDPLWFEEPVPPGQEDAMAQVSRHTSIPIAAGERLTTK"
BASE COUNT          313 a          510 c          490 g          376 t
ORIGIN      
        1 acaaggccgc tttttcggct tgctcgacgg tggacgcggt ctgattgaag cgttgcttgc
       61 gactgtcgcg ctggtgatct tcgcgactgc caccgagaag catggcctgc cgaccgacgt
      121 aggcttcaaa tacgtcgtct acctgtattc gggcgtttgt atcgcgctgg gattgttgat
      181 ggcgctggtg aaagaaccgc ccgcaaccgc gcaggaacag cagcaagcag cagacaatct
      241 caagcaaaaa cactcgctgt ggcgcgatct cctcacgctg atgcgcattc cgcaactctg
      301 gctgatggcg gccattgtgt tctgcggtta tcagatcttc tgggcaacct atagcttctc
      361 cgcttatctg caagtcggcg acctgaagat gaccgtggtc atggccggta cgctcaccac
      421 gctcaagctt tggatgcgcc cgattggcgg tattggcggc ggctatcttg gcgatcgttt
      481 ctccacgctt ggcgtgttga ccagcgcgct gtttctcgcg gcgctcgggc tggtcgcact
      541 ggttgtgctg ccgacgctcg gacatatcga tccgcgtgca ggcgttgcga tgatcgccgt
      601 cgtggtgttg ctgatcggta ttctgacgta tgcgattcgc gggctctact ggtcactgct
      661 cgaccaatgc ggcattccgt tgcgtataac gggcctggcc atcggcctcg tttcgctgat
      721 cggttattca cccgacgtgt tcctgccgct cgtgaacggc tggactactg agcatttccc
      781 cggcctcctc ggctaccagt tctacttctc ttacatcgct gcgatcagcg tgattggcgg
      841 catcgccgca ctcgcactca agcgcatgcg cacgaccgtt gcaaaggatg ccctccaatg
      901 aaaatcgtct ctctcgaaac gcatttcgta gccgtaccgc ctccgcattt gggcggcatg
      961 tactggatct tcgtgaagct gaaaacggct tgcgggattg aaggcgtggg cgaaatttat
     1021 tcggcgacgt tccatccgaa agcgatggcg cacattatcg acgacgtgtt cggacgttat
     1081 ctgcaggacc acgatcctca tcacgtcgag cgttttttcc gcgaagcgta ttcaagcggc
     1141 ttcacgcaac gtcccgatct cacgatgatg ggcgtggtca gcggtctgga aatggcgtgc
     1201 tgggacatca tcggcaaggc agcggacaag ccggtgtatg aactgctggg cggcctggtc
     1261 aacgaacggc tgcgttcgta cacgtacctc tatccgaaga acgccgcagg cgaatacgac
     1321 tacgacgatg tcgatctcgc cgccgagtgc gccgtgcaga acgcggatcg cggcttcact
     1381 gcggtcaagt tcgatcctgc cggtccgtac accgcgtact ctggccatca gctttcgctc
     1441 gacgtactgg aacgctgcga gaccttctgc aagcgcatcc gcgaagcagt cggcaaccga
     1501 tgcgacctgc tgttcggaac acacggacag atggtgccgt cgtccgctat ccggctcgcg
     1561 caacgcctcg aaaaatacga tccgctctgg ttcgaagagc ccgttccgcc cggtcaggaa
     1621 gacgcaatgg cgcaagtctc ccgccatacc agcatcccca tcgcggctgg cgaacggctc
     1681 acgaccaag
//
LOCUS       DATGBK010000534         1647 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_122252, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000534 DATGBK010000000
VERSION     DATGBK010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122252"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(41..460)
                     /locus_tag="VKJ77_07675"
     CDS             complement(41..460)
                     /locus_tag="VKJ77_07675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004198812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HMC45185.1"
                     /translation="MPTPKEKTDFSDRLKFSMTRAPEKMRGATDLALHFNLRYHGEPV
                     SPQTTHKWLTARSIPTADKLATLAEWFKVEQHWLHYGPPPSGNPQNAPKPITHDEKYP
                     ASEETLELASKIEALSSHHRYLLEELIDQFYGTGGKR"
     gene            774..>1647
                     /locus_tag="VKJ77_07680"
     CDS             774..>1647
                     /locus_tag="VKJ77_07680"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041491300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA modification GTPase"
                     /protein_id="HMC45186.1"
                     /translation="MSNNDTDPIVAIATAPGRGGIGVIRLSFGRAGEAAAKHAMLALC
                     GQLLDARHASYVPFIDARGEAIDRGIALYFPAPHSYTGEHVLELQGHGGPIVLQLLLQ
                     RAVDTGREFGVRLAEPGEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDG
                     AFSREIHALVEDVITLRMLVEATLDFPEEEIDFLEAADARGKLARIRTLLDKVLADAR
                     QGALLREGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDKVTQTIQIEGIPL
                     HVIDTAGLRDTQDEV"
BASE COUNT          335 a          488 c          485 g          339 t
ORIGIN      
        1 gggcgttttt gtttctgtgt agcttgtttg taaaagcgcc tcaccgtttc ccacccgtcc
       61 cataaaactg gtcgatcaac tcctccagca aataccggtg atgcgacgaa agcgcttcaa
      121 tcttcgaagc cagctcaagc gtttcctccg acgccggata cttctcatca tgcgtgatcg
      181 gcttcggcgc gttctgcgga ttcccgctcg gcggaggccc gtaatgaagc caatgctgct
      241 ccaccttgaa ccactcagcg agcgtcgcca gtttgtcggc agtgggaatc gaacgtgcgg
      301 tcagccactt gtgcgtggtt tgcggcgaca cgggttcgcc gtgataacgc aaattgaaat
      361 gcaaagcgag atcggttgcg ccgcgcattt tctcgggcgc gcgcgtcatc gaaaatttga
      421 gccgatccga aaaatcggtt ttctctttgg gtgttggcat ggtcgcgatt gtgcgaggca
      481 aacgcagtgg cggagtcaac cacctacgtt agatatggcg catctttctc atttttagcg
      541 cgctcaggaa aaataagtcg agaatgccgc gatgagtgat tgatcgccgt gacccaataa
      601 cgaccacatt tgcacccaat gaaacgatgc acactcacag ccattcctat ggttcatcat
      661 atcccactta agataaatta agaatcctcc tagcggaccg tgcgacgcag cgaaacgaaa
      721 gcgccacgct acaatgccgc cactcgttca ctcgcgttcc gctggaaaca accatgtcca
      781 ataacgacac cgatccgatc gtcgcgatcg ccaccgcgcc ggggcgtggg ggtatcggcg
      841 tgatccggct gtcgttcggg cgggcgggcg aagcggcggc gaaacacgca atgcttgcgc
      901 tctgtggcca gttactcgac gcgcggcacg cgagctatgt gccatttatc gatgcacgcg
      961 gtgaggcgat cgatcgcggc attgcgctgt atttccccgc gccgcactcc tacaccggcg
     1021 aacatgtgct cgagttacag ggacacggcg gtccaatcgt gctgcaactg ctgctgcagc
     1081 gtgctgtcga taccgggcgt gaattcgggg tgcggttggc cgagccgggc gaattcacgc
     1141 gtcgcgcctt tctcaacgac aagctcgatc tggctcaggc cgaggcagtc gccgatttga
     1201 tcgaggcgag cacggaagca gcggcgcgct ccgcgggccg ttcgctcgac ggcgctttct
     1261 cgcgcgaaat ccatgcgctt gtggaagacg tgatcacgtt gcggatgctg gtcgaagcga
     1321 cgctcgattt ccccgaggaa gagatcgact tcctggaagc tgccgatgcc cgcggcaagc
     1381 tcgcacgcat ccgaaccttg ctcgacaaag tgctcgccga tgctcgtcag ggcgcgctgt
     1441 tgcgcgaggg gctatcggtc gtgctcgcgg ggcagccgaa cgtgggcaaa tcgtcgttgc
     1501 tgaatgcgct ggccggcgcg gaactcgcca tcgtcacacc gattgccggc accacacgag
     1561 acaaagtcac acagacgatt cagattgaag gcattccact gcatgtcatc gataccgccg
     1621 gcctgcgcga tacccaggac gaggtgg
//
LOCUS       DATGBK010000535         1808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_192073, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000535 DATGBK010000000
VERSION     DATGBK010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192073"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..938)
                     /gene="dnaX"
                     /locus_tag="VKJ77_07685"
     CDS             complement(<1..938)
                     /gene="dnaX"
                     /locus_tag="VKJ77_07685"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR02397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HMC45187.1"
                     /translation="MSLYRTWRPKTFADLVGQDAVVRTLTTAIDTGRLAHAYLFSGPR
                     GSGKTSAAKILARCIECEHGPTATPDNTCDNCTAILAGNALDVLEIDAASNRGIDEIR
                     ALRDAVKFAPATMRSKVYIIDEAHMLTKEGANAFLKTLEEPPPYAVFILATTAPESLP
                     PTILSRCQRYAFRRIPIETMIARMREISTAEGIVIDDGALGAIAYRADGGLRDALTML
                     EQVAAFAGGPVVTETVDAAFGQTGREFAQRILVAALAGDPTAALVAIDEASDAGADMP
                     GLIRGTIAEFRHLLVARVNPELLSRDLSADDAALAIG"
     gene            1178..>1808
                     /locus_tag="VKJ77_07690"
     CDS             1178..>1808
                     /locus_tag="VKJ77_07690"
                     /inference="COORDINATES: protein motif:HMM:TIGR00614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HMC45188.1"
                     /translation="MISRVLAGEDTLAILATGAGKSLCYQLPALMLDGTTIVVSPLIA
                     LMKDQIDMLRERGVTDVVALNSTLSEDQEARAMERIASGSIKIVFVTPEKLEDDAFVG
                     LLRTLHVPLFVVDEAHCISAWGHDFRPAYLNLGRVIDQFGDPTVLALTATATPAVRED
                     ILVQLGIPNVKPIVKGFDRPNLRYEVRRAENESAKLKALKELFETGLEGT"
BASE COUNT          328 a          557 c          584 g          339 t
ORIGIN      
        1 ccgatcgcga gggccgcatc gtccgcggag agatcgcgcg acaatagctc cgggttgacg
       61 cgcgcgacga gcaaatgccg aaactccgca atggtcccgc gaataaggcc gggcatgtcg
      121 gcgcccgcgt cgctggcctc gtcgatcgca acgagcgcgg cggtcggatc gcccgcaagt
      181 gccgcgacca gaatgcgctg cgcgaattcc cgcccggtct ggccgaacgc cgcatcgacg
      241 gtttcggtca cgaccgggcc gcccgcaaac gccgcaacct gttcgagcat cgtcaaagcg
      301 tcgcgcagtc cgccgtcggc gcgatacgcg attgcgccca gcgctccgtc gtcgatcacg
      361 atgccttcgg ccgtgctgat ctcgcgcatc cgcgcgatca tcgtctcgat cggaatgcgc
      421 cgaaacgcat accgctggca gcgcgacaaa atcgtcggcg gcagcgactc gggcgccgtc
      481 gtcgcgagga tgaacaccgc atacggcggc ggctcctcaa gcgtttttag gaatgcgttc
      541 gcgccttctt tggtgagcat gtgcgcttcg tcgatgatgt acactttgct gcgcatcgtc
      601 gcgggcgcaa acttcacggc gtcgcgcaag gcgcgaatct catcgatacc gcggttggaa
      661 gcggcgtcga tctcaagtac gtctaaggcg ttgcccgcta aaatcgctgt gcagttatcg
      721 cacgtattat cgggcgtcgc ggtcggcccg tgttcgcact cgatgcagcg cgcgagaatc
      781 ttggcagccg aggttttgcc cgagccgcgc ggcccggaaa agaggtaggc atgtgcgagg
      841 cggccggtgt cgatcgcggt ggtcagggtc cggacgacgg cgtcctggcc gacaaggtcg
      901 gcaaacgttt tggggcgcca ggtacggtac agtgacatcg gacgttcggg tttcggggaa
      961 accgggaacc ctccccggtg cggggagcgt ttacgagagc agccgagcgg gtagaattct
     1021 catagccggt cggtacggcg cacgctttta taagcgcggc gtcatttcta tcgggtgcac
     1081 aggtacagga gcattcgtgg ctgtagcgat tttggacgta cacgcggttt tgcgtgacag
     1141 atttgggttc gatcacttcc atccgggtca ggaggaagtg atttcgcgcg tgctggccgg
     1201 tgaagatacc ctcgcgattc tcgcgacggg tgccggcaaa tccctatgct accagctgcc
     1261 tgcattgatg ctcgacggaa ccacgatcgt ggtcagcccg ctcatcgcgt tgatgaaaga
     1321 ccagatcgat atgctgcgcg agcgcggcgt caccgatgtc gtggccctca actcgacgtt
     1381 gtccgaggat caggaagccc gggccatgga gcgcattgcg tccggctcga ttaaaatcgt
     1441 tttcgtcacg ccggaaaagc tcgaggacga cgcgttcgtc gggcttctgc gcacgctgca
     1501 cgtgccgctg ttcgtcgtcg acgaagcgca ttgtatcagc gcctggggcc acgattttcg
     1561 tccggcgtac ctgaacttag gccgcgtcat cgaccaattc ggcgacccga ccgtcttggc
     1621 gctaaccgcc accgcaacgc ccgccgtgcg cgaagatatt ctcgtgcagc tcggcatccc
     1681 caacgttaag ccgatcgtca agggcttcga ccggccgaac ttgcgctacg aagtccggcg
     1741 cgcggagaac gaatccgcga aactcaaggc gctcaaggag ttattcgaga ccggcctcga
     1801 gggcacgg
//
LOCUS       DATGBK010000536         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_284426, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000536 DATGBK010000000
VERSION     DATGBK010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284426"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..491)
                     /locus_tag="VKJ77_07695"
     CDS             complement(<1..491)
                     /locus_tag="VKJ77_07695"
                     /inference="COORDINATES: protein motif:HMM:NF023010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3237 domain-containing protein"
                     /protein_id="HMC45189.1"
                     /translation="MSTPLFDDLPKPLKSVQTRPLFVMRLDVKPIVIVGETPGSFRRV
                     GIVPSGTFAGERLSGKVLDGGSDWQTVRSDASTTLDVRLILQTDGGVNITMAYRGVRH
                     GPADVIQRLEKGEEVDPASYYFRINPMFEAPAGKYEWLNRIIAVGTGHRFAYGPVYSV
                     FEV"
     gene            complement(575..895)
                     /locus_tag="VKJ77_07700"
     CDS             complement(575..895)
                     /locus_tag="VKJ77_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004521451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HMC45190.1"
                     /translation="MLYEIRTYTFKPLRAAEWLALYKSEALPLQKEFLGELVGFFTTE
                     IGDISQIVHIWAYKSLDDRLERRDKMAADRRWQAFGSKVKALDMLVSMESRIMRPTDF
                     SPLK"
     gene            complement(924..>1518)
                     /locus_tag="VKJ77_07705"
     CDS             complement(924..>1518)
                     /locus_tag="VKJ77_07705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45191.1"
                     /translation="VEAEFIQADVRFEEDVRNLVDGTVARFGRLDVAINAAGAEGESA
                     PVMEQTPERYAAVFDTNVLGTLLGMKHELRVMTAQGSGSIVNISSTMGARGAAGASLY
                     VASKHAVEGLTKSAALEAADFGVRVNAVAPGPVETAMLNRLTVNAERKAAFLAGVPLK
                     RAGTPEEIADAIVFVSSDKSSFMTGEVLRVNGGRTAS"
BASE COUNT          294 a          466 c          436 g          322 t
ORIGIN      
        1 aagacttcaa acacgctgta gaccggtcca tacgcgaacc gatgtcccgt tcccacggcg
       61 atgatccggt tcagccactc atactttcct gctggcgctt cgaacatggg gttgatccgg
      121 aagtagtagc ttgccgggtc gacttcctca cctttttcca gtcgctgaat gacatcggcg
      181 ggaccgtgtc gcacgccgcg atacgccatc gtgatgttca cgccgccatc ggtttgcagg
      241 atcaggcgca cgtcgagcgt ggtgctcgcg tcgctgcgaa cggtttgcca atcgctgccg
      301 ccgtccagca ccttgccgga cagccgctcg cccgcaaacg ttcctgacgg tacgattccc
      361 acgcgacgaa atgaccccgg tgtttcgccg acgatcacaa ttggcttgac gtcgagccgc
      421 ataacgaaca atgggcgggt ttgcacgctc ttgagcggct tagggagatc atcgaaaagc
      481 ggagtagaca tggtgttcac catcgcgtta tgtaagcagc ggcgccgatc cgtatgacga
      541 acctgaaggc tgcatgttca ttagattgcc taagctattt cagcggcgag aagtccgtgg
      601 gccgcatgat ccgggactcc atgctgacga gcatgtccag cgcctttact ttgctgccga
      661 atgcctgcca gcgcctgtcg gcggccatct tgtcgcggcg ctcaagccga tcgtccaggc
      721 tcttgtacgc ccagatatgg acgatctggc tgatgtcgcc aatctcggtc gtgaagaaac
      781 cgaccagttc gccgaggaat tccttctgaa gcggcagggc ttcgcttttg tacaacgcaa
      841 gccactcagc ggcgcgcaac ggtttgaagg tataggttcg aatttcgtaa agcatcggtt
      901 atctccaggg gatatcaaac gtattacgac gcggttcgtc caccattgac cctgagcact
      961 tcgcctgtca tgaagctcga cttgtcggac gaaacgaaca caatagcgtc ggcgatttct
     1021 tcaggcgttc cagcgcgttt gagtggaaca cccgcgagga aggcggcctt gcgttcagca
     1081 tttaccgtca ggcgatttag cattgctgtc tccacgggac cgggggcgac ggcattgacc
     1141 cgcacaccga agtccgcggc ctcaagcgcc gcggacttcg tcagaccctc caccgcgtgc
     1201 ttgctggcca cgtagaggga cgcgcctgcc gcgccacgtg cgcccattgt cgacgagatg
     1261 ttgacgatgc tgccgctgcc ttgcgcggtc atcacgcgca gttcgtgttt catgcccagc
     1321 aacgtaccga gcacattggt atcgaagacg gccgcgtagc gttcgggcgt ctgctccatc
     1381 acgggcgcag actcgccttc ggcacccgcg gcgttgatcg ccacgtcgag ccgcccgaag
     1441 cgggccactg tgccgtcaac gagattgcgg acatcttctt cgaagcggac atccgcctga
     1501 atgaattcag cttctacg
//
LOCUS       DATGBK010000537         2205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_30090, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000537 DATGBK010000000
VERSION     DATGBK010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30090"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(313..1533)
                     /locus_tag="VKJ77_07710"
     CDS             complement(313..1533)
                     /locus_tag="VKJ77_07710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing sensor histidine kinase"
                     /protein_id="HMC45192.1"
                     /translation="MNPVYGVLQATPDDSDEAIARDVATIGRIGAVPSMLRVICKNTG
                     LGFAAVARVTEGTWTACAVQDDIQFGLLPGGQLDVHTTLCSESRAMRRPVVIDHASTD
                     PVYREHHTPRIYNIESYISVPIVLPNGDYFGNLCAIDPRPAMISDARTLTMFTLFAEL
                     IALQLESENERSATEDALLTERTTAELREQFIAVLGHDLRNPLAAVGATAEWLARRSA
                     EPELVSIGTRLRATTRRMSRLIDDVLDFARGRLGTGIGVSLAPVEDLPDALRHVVTEL
                     RDANPDRVVLEQIAVDGCIYCDRGRIQQLLSNLLANALTHGAPDQPVRVVVSVDAGEL
                     AISVSNLGAPIAPQDLEKVFEPYWRPATSQPGGGLGLGLYICSQIVEAHGGVLAVSSS
                     AETGTCFMARIPCE"
     gene            1778..>2205
                     /locus_tag="VKJ77_07715"
     CDS             1778..>2205
                     /locus_tag="VKJ77_07715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007857157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HMC45193.1"
                     /translation="MTGAVFSKSPTGISGFDDVTLGGLPAGRPTLMCGAAGCGKTLFA
                     MTFLVEGVLKYGEPGVLVSFEESAEDLAANVASLGYDVMSLIDQKKLAIDHVKIDPAG
                     IEDTGEYDLEGLFVRLDYAIRSVNAKRVVLDTLEALFASFP"
BASE COUNT          413 a          677 c          716 g          399 t
ORIGIN      
        1 ggacgtgaag gccgtcttcg cggccgagcg cgcgcacggt agtcagcacg acgttgtcag
       61 cgtacacgag tccgctggcc ggacggcgcc ggccctgcac ctgcacgacc gatggcgacg
      121 ccgccgcgac ggcgtcggcg agttgattcg agaatgatgt gagaaggtca ctggacatgc
      181 ggcgatggtg acagatgcgg aaagacgcgg catcacccaa acggggagcg caggggggct
      241 attattgcca ggtgccaggt gccaggtgcc aggtgccagg tgcttatggc ggcggccgcc
      301 gttcacatcg cctcactcac acggtatccg tgccataaag caggtccccg tctccgccga
      361 cgaactcacc gctaataccc cgccgtgcgc ctcgacgatc tgcgagcaaa tgtagagtcc
      421 caacccgagc ccgccgcccg gctgactggt tgccggccgc caatacggtt cgaagacttt
      481 ctccaggtct tgcggcgcaa tcggtgcacc taggttggag acggagatcg cgagttcgcc
      541 ggcgtccacc gataccacca cccgcaccgg ttgatcgggg gccccatgcg tcagcgcatt
      601 agccagcagg ttggacagca gttgctggat tcgcccccgg tcgcagtaga tacagccgtc
      661 caccgcgatc tgttccagga cgacacggtc cggattcgcg tcgcgcagtt ccgtgaccac
      721 atggcgcagc gcgtcgggta gatcttcaac cggagcaagc gacacgccga tacccgtgcc
      781 gagccggccg cgggcgaaat cgagcacgtc gtcgatcagg cgggacatgc gccgcgttgt
      841 cgcccgcaac cgcgtgccga tgctcaccag ttccggttcg gcgctgcgtc gcgccagcca
      901 ttccgcggtt gcgcccacgg cggcaagcgg attgcgcaga tcgtggccga gcacggcgat
      961 gaactgctcg cgcaactcgg cggtcgtccg ctcagtgagg agtgcgtctt cggtcgccga
     1021 gcgctcgttc tcgctctcca gttgcagtgc gatcaattct gcgaagagcg tgaacatggt
     1081 gagcgtgcgt gcatccgaga tcatcgctgg acgcggatcg attgcgcaca ggttgccgaa
     1141 atagtcgccg ttcgggagaa cgatcggcac cgagatataa ctctcgatgt tgtagatgcg
     1201 tggcgtatgg tgctcgcggt agaccggatc ggtgctcgca tggtcgatga caacaggccg
     1261 gcgcatagcg cgagactcgc tgcacagcgt ggtgtggacg tcgagttggc cgccaggcaa
     1321 cagcccgaac tgaatgtcat cctgcacggc acaggcggtc catgtcccct cggtgacgcg
     1381 cgccaccgcg gcgaaaccga ggccggtgtt tttgcagatc acgcgcagca tggacggaac
     1441 agcgccgatc cggccgatgg tggccacgtc gcgagcgatg gcttcgtcgc tgtcgtccgg
     1501 ggtggcctgc aaaacgccat aaacagggtt caaaattcta cctctcggtg ctcggtattt
     1561 tttcttcgat gctgcaccca attgtacggg tcaggttgct cgcgccaagg gtttaaaaat
     1621 ggacgccggg tccccaggca ctggcgagcg tgatcttctg gattgcgtag tgcgtaccgc
     1681 gatgccaaga tgcgctgtcg ccgcggacca actggcgcag gtatcgagcc tgggccggct
     1741 gtggtgccct tcctgttaaa ccttacaaag aaaaacaatg accggagcag tgttttcaaa
     1801 atcgccgaca ggcatttccg gcttcgacga cgtcaccctc ggcgggttgc cggcaggccg
     1861 tccgaccctg atgtgcggcg cggcaggatg cggcaagacc ctgttcgcca tgacgttcct
     1921 tgtggaaggc gtactgaagt acggtgaacc tggcgtgctg gtgagcttcg aggaatcggc
     1981 ggaggacctg gccgcgaacg tggcgtcgct gggctacgac gtgatgtcgc tgatcgatca
     2041 gaaaaaactc gccatcgatc acgtcaagat cgacccggcg ggaatcgagg acaccggcga
     2101 atacgacctc gaaggcctgt tcgtgcggct cgactacgcc attcggagcg tgaacgcaaa
     2161 gcgcgtcgta ctcgatacgc tcgaagcgct gttcgccagt ttccc
//
LOCUS       DATGBK010000538         1697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_261415, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000538 DATGBK010000000
VERSION     DATGBK010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261415"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /locus_tag="VKJ77_07720"
     CDS             <1..782
                     /locus_tag="VKJ77_07720"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HMC45194.1"
                     /translation="RIARENEEGLVRLSKVMSELGLCSRREADEWIEKGWVLVDGEVI
                     DTLGTKIRPDQNVEIAPAAHAAQMQQVTILIHKPVGYVSGQAEDGYQPAVTLVNPSNH
                     WADDQSGIRFTPLHLRTLAPAGRLDIDSTGLLVLTQDGRVAKQLIGGHSDVDKEYLVR
                     VKFGEHEVDIEPHFPPESLALLRHGLSLDDVPLKTAQVSWQNGEQLRFVLREGKKRQI
                     RRMCELVGLEVVGLKRIRMGHVTLGALPPGQWRYLGADEAF"
     gene            1002..1241
                     /locus_tag="VKJ77_07725"
     CDS             1002..1241
                     /locus_tag="VKJ77_07725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45195.1"
                     /translation="MSVEIIVRETKTGLEIVSGRRRLDALLAVRDEVVVTSPGVGEVV
                     IARLPDGRLQASANPEHIALFRQPEMASGPKKSFA"
     gene            complement(1482..>1697)
                     /locus_tag="VKJ77_07730"
     CDS             complement(1482..>1697)
                     /locus_tag="VKJ77_07730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HMC45196.1"
                     /translation="GAVQRYSMIRYQGFDQYGSPIERLAEGFHARVVQHECDHLIGKL
                     YPMRVTDFSKFGFTEILFPGLDPKTDD"
BASE COUNT          367 a          484 c          505 g          341 t
ORIGIN      
        1 cccgcatcgc gcgcgaaaat gaagaaggac tcgtgcgctt gtcgaaggtg atgtcggagc
       61 tcggcctgtg ctcacgccgt gaagccgatg aatggatcga aaagggctgg gtgcttgtcg
      121 acggcgaagt catcgatacg ctcggcacca agattcgtcc cgaccagaac gttgaaattg
      181 cacccgccgc gcatgcggcc caaatgcagc aggtcaccat cctgatacac aagccggttg
      241 gctacgtttc ggggcaggcg gaagacggct atcagccggc tgtcacgctg gtcaatccgt
      301 ccaaccattg ggccgatgac cagtccggca tccgcttcac gccgctgcat ctgcgcacac
      361 tcgcaccggc aggccgtctg gatatcgatt cgaccggcct gctcgtcctg acccaggatg
      421 gccgggtggc gaagcaactt atcggcggcc attcggacgt cgataaggaa tatctcgtgc
      481 gcgtgaaatt cggcgagcac gaagtcgata tcgaaccgca tttcccgcct gaaagcctcg
      541 cgctattgcg ccacggactc tcgctcgacg acgtgccgct caaaacagcg caagtcagtt
      601 ggcaaaatgg tgaacagttg cgctttgtgt tgcgtgaagg caaaaaacgc cagattcgcc
      661 ggatgtgcga gctggttggg ctggaagtgg ttggcctgaa gcggatccgg atgggtcatg
      721 tgacgctcgg cgccctgccg ccgggccagt ggcgttatct gggagcggac gaagcgttct
      781 aaagcagctt cgctcagggc tttccgcgcg ctttaaatcg tcgcggaaag acgaagaaat
      841 tgttaccaat cgatgcgaac ggcacccgcc gaacgcatcg attttttttt ggccaacttt
      901 ttggctaaag aaaatatgac gcatgaccgt tagtcaggta cacgcgcaat ttaccgcttc
      961 gagtcgcgtg tacttaggcg ttgagctact ggagaattgc catgtccgtc gaaatcattg
     1021 ttcgcgaaac caagaccggc ctcgaaatcg tcagcggccg gcgtcgactc gacgcgctgc
     1081 tcgccgtgcg cgatgaagtc gtcgtgacga gcccgggcgt gggtgaagtt gtgatcgcgc
     1141 gattgccgga cgggcgcttg caggcatcgg cgaatccgga gcacatcgca ttgtttcgcc
     1201 aaccggaaat ggcgtcggga cccaagaaaa gcttcgcttg acatgaagcc gccgggtttc
     1261 ggcgatcgct gattcttgat gcgtgaatgt gccgcagcga aacggccgga ttctgtccgg
     1321 cgcggctgag cgcattaccg attgatcacg cgatgcgccg cgacgaaagc tgcatctggt
     1381 taaactaacc cgccaaacaa aagggccgcg attcttcgcg gcccttattc ctttcaacgg
     1441 gcaaacacag ccggtcaaac ccgccgttcg ccctttatcg atcaatcatc ggttttcgga
     1501 tcaagccccg gaaacagaat ctcagtgaag ccgaatttcg agaagtccgt aacccgcatc
     1561 ggataaagct tgccgatcag gtgatcgcat tcgtgctgca cgacgcgtgc gtgaaagcct
     1621 tcggccaggc gttcgatagg tgagccgtac tgatcgaacc cctgatagcg gatcatggaa
     1681 taccgctgca cggcgcc
//
LOCUS       DATGBK010000539         2180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_122335, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000539 DATGBK010000000
VERSION     DATGBK010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122335"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(292..1044)
                     /gene="pxpA"
                     /locus_tag="VKJ77_07735"
     CDS             complement(292..1044)
                     /gene="pxpA"
                     /locus_tag="VKJ77_07735"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HMC45197.1"
                     /translation="MEIDLNADLGEGMGTDEALLDLVSSANIACGWHAGGATAMRDCV
                     RWAVAKGVAIGAHPSFNDPANFGRKEMDLPPYEIYAGVLYQLGALAAIVKAEGGRMSH
                     VKPHGALYNQAAKNPEIAEAIVAAIRDFDPSLLVFGLANSNLVDAARKANMVAIEEVF
                     ADRGYRADGSLVPRKDPGALLEDEEAVITRTLAMATEHRVQAVSGEWVPINAQTVCLH
                     GDGAHALAFARRIRGALEEAGIDVRAAHAAEV"
     gene            complement(1062..2093)
                     /locus_tag="VKJ77_07740"
     CDS             complement(1062..2093)
                     /locus_tag="VKJ77_07740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HMC45198.1"
                     /translation="MIDVIRAGMLSSVQDLGRAGYRHLGVSSGGALDALSLEIGNRIV
                     GNKPDAAGIELTLGPTTLRFTRATRVAITGTDFAATLDDKPVYSWWSLPVQAGQELTL
                     RGARHGMRGYVCVAGGIDVLPMLGSRSTDLGACFGGLGGRALRDGDRLATGVPQPNKS
                     AVFSSAGTAFGVKAPAWCKFVYVEEPVRRGKHTPGNSWSLPIRVLRGPEYETFTKTAQ
                     RDFWNEEWTITPNSNRMGFRLAGTVLERGDKADLLSHAVLPGTIQVPPNGQPIVLMGD
                     AQTTGGYPKIGSVIKADLWKLAQARLSSGVRFIETTVEAARHALAEERMYVKQVESAI
                     AMHAERLDR"
BASE COUNT          412 a          710 c          643 g          415 t
ORIGIN      
        1 cctatcagtg gccataggtt gacagcggtt cccataagat ctccaagtga tcgcggtaat
       61 gccccggtaa gggcttcttc cgccgctgga cgaaccgctt gcttcgagcg ggccgttcca
      121 ttggcttgat aaaacgactc tgtggccgct tacgaaaacg ccctgccaat acgcgaggca
      181 ttcaggttca ttgggcgtgg atttgactcg ctgcgtgaca cggcacaagc agcgaatcag
      241 caaatacgcc agcattcgat tgcggcaaaa aacgctaaaa atgaccgttc atcaaacctc
      301 ggcagcgtgc gcagcacgaa cgtcgatgcc cgcctcttcg agtgccccgc gaatccgccg
      361 ggcgaaagcg agtgcgtgcg cgccatcgcc gtgaagacaa accgtctgcg cattgatcgg
      421 cacccactct ccgctgaccg cctggacgcg atgctccgtt gccattgcca gcgtgcgggt
      481 gatcacggct tcctcgtcct cgagcaacgc gccggggtcc ttgcgcggca cgagcgagcc
      541 atccgcccga tatccgcggt ccgcaaaaac ttcttcgata gccaccatgt tcgccttgcg
      601 cgcggcatcg acgagattgc tgttcgccag cccgaacacg agcaatgaag gatcaaaatc
      661 acgaatcgcc gcgacgatag cctcggcgat ctccggattc ttcgcggcct ggttatacag
      721 cgcgccgtgc ggctttacgt gcgacatccg gccgccttcc gccttcacaa ttgcagccag
      781 cgcgcctagc tgatacagca cgcccgcgta aatctcgtac gggggaagat ccatttcctt
      841 cctgccgaaa ttggcgggat cgttgaaact cgggtgcgcg ccaatggcaa cacccttcgc
      901 gacagcccag cgcacgcaat cgcgcatggc agtagctccc cccgcgtgcc agccgcaagc
      961 aatattcgcg gagctcacga gatcgagcag tgcttcgtcg gtgcccatgc cttcgccgag
     1021 atcggcgttc agatcgattt ccatcttcgt tccctattca cttaccggtc gaggcgttcc
     1081 gcgtgcatcg cgatagctga ttcgacctgt ttcacataca tgcgctcttc ggccagcgcg
     1141 tgacgcgcgg cttccactgt tgtttcgata aagcgcacac cgctgctgag tcgcgcttgc
     1201 gcgagcttcc acaggtcggc cttgatcacc gagcctattt ttggatatcc gccggtggtc
     1261 tgggcatcgc ccatcagcac gatcggttga ccgttcggcg gtacttgaat cgtgccgggc
     1321 aatacggcat gggacagcag gtcggctttg tcgccgcgtt ccaggaccgt gccggcgagc
     1381 cggaaaccca tgcggttact gtttggcgtg atcgtccact cctcgttcca gaaatcgcgc
     1441 tgggccgtct tcgtgaaggt ctcgtattcg ggaccgcgca gtacgcggat cggcagcgac
     1501 catgaattgc ccggcgtgtg tttgccgcgc cgtaccggtt cttccacata aacgaacttg
     1561 caccacgcgg gcgctttcac gccaaaggcc gttcccgccg atgaaaacac ggcgctcttg
     1621 ttcggctgcg gcacgcctgt agccaaacgg tcgccgtcgc gcaacgcccg accgccgaga
     1681 ccgccgaaac acgcgccgag gtcggtactg cgggaaccga gcatgggcag gacgtcgata
     1741 ccgccagcca cgcacacgta accgcgcatg ccgtgcctgg cgccacgcag agtcagttcc
     1801 tggccggcct ggaccggcag gctccaccac gaatagacgg gtttgtcgtc cagcgttgca
     1861 gcgaaatccg tacctgtgat cgccacccgg gtggcgcgcg tgaagcgcag ggtggtgggt
     1921 ccgagcgtca gttcgatgcc cgccgcatcc ggcttgttgc ccacgatccg gttgccgatt
     1981 tccagcgaca acgcgtcgag tgcgccgccc gagctgacac ccaggtgccg ataacccgca
     2041 cggccgagat cctgcacgga agagagcatg ccggcgcgaa tgacgtcgat catgcgagca
     2101 cctccagcgc ggtaaaacgg acgtgatcac cgggttgcat cagtgtgggc gggttgcggg
     2161 cgggatcgaa gagcttcaga
//
LOCUS       DATGBK010000540         2236 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_30164, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000540 DATGBK010000000
VERSION     DATGBK010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30164"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..1403)
                     /locus_tag="VKJ77_07745"
                     /pseudo
     CDS             complement(189..1403)
                     /locus_tag="VKJ77_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006025168.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
     gene            complement(1616..>2236)
                     /locus_tag="VKJ77_07750"
     CDS             complement(1616..>2236)
                     /locus_tag="VKJ77_07750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HMC45199.1"
                     /translation="PFDTILHQLETCYHNKLVVYQGDIDRVLGVLHVRKTLSALHNQE
                     FERETLRELLAEPYFVPAGTPVFQQLQFFQESRHRIAIVVNEYGELQGLVTPEDIIEE
                     LIGEFTTTIPRGAGSRSGWNEEGECIVAGSMPLRELNRWLKLTLPTDGPKTLNGLILE
                     TLEEIPDGDVSVRIAGVHFEVMRSDDQAIRTVKIFRPQGVVLRKQG"
BASE COUNT          410 a          689 c          704 g          433 t
ORIGIN      
        1 tttggcgggc ggcgctgaac cgagcgcggt gagttccagc acggtgacgc cgccgcgttt
       61 tagcgcagcg cgcgcacggg ctgaatccgc ggcgatcgtc ttgccgcgtt tgtccgcacc
      121 gtttgcgtca atgcctcgcc agccaaagcg tgtatcgacg gatagtgggt tcatgttcat
      181 gttcatgttc atgtgagctc cgtggcgtcg gcggcttccg ctacgcttgt cacgccttcg
      241 cgtacgcgtg cgaacgctgc atcgcgcagg cttggcatgc cctcggtttg cgcctgccgc
      301 gtgatggcgt gcgtggcggt gcgtgcgacg atcagttcgc gcaacgtgtc tgagacgggc
      361 atcagttgat gcacgcccac tcggccgcga tagccaatgc catggcacgc ggcgcaccca
      421 cgcggctcga acggtttgaa tcccggctcg aactccaggt ccgaaggcaa gcgacaagcg
      481 tcgcaaaggc gccgcaccag ccgttgcgct gttacaagcc tcagcgccga cgccaggttg
      541 tacggcgcaa tgccaatatc gatcaatcgt gcgatggcgg cgggggcgtc gttggtatgc
      601 agtgtggaga gcacgagatg gccagtttgc gcagccttca cggcaacgtc ggcggtttcg
      661 gcgtcgcgga tttcgccgac catgatcacg tccgggtctt gccgcatgaa cgcgcgcagc
      721 gcgaccgcga aagtgaggcc cgctttgtcg cggacactga cctgattgat accggcaagc
      781 tggatttcgg cgggatcttc gacggaacag acgttgcgtg actccgcgtt gagcatctgc
      841 aaaaagcagt acagcgacag ggttttgccg ctgcccgtgg ggccggtgac cagcacgagt
      901 ccgtgcggtg cgtggatcgc ggcttccaca gtcttctact ggtcgggcgc aagccccagt
      961 gcggccagcg acagatccgc cggcagtgac tccaggcggc gcaacaccag tttttcaccg
     1021 aacaggaccg gcagcgaatt cacccgatag tcttccggat tcccgttcgc cagcggcaac
     1081 cgcaaacgtc cgtcctgtgg cacgcgccgc tcggcaatgt ccatgcgcgc cagcactttg
     1141 attcgcgtga tgaaagcgtc gcgcaaatgc ggtggcggct tgagaaagac gtgcaatgca
     1201 ccgtcaatac gcaagcggat gcgccactcg tgttcgcccg gttcgacgtg aatatcggat
     1261 gcaccgcgtg cagctgcttc gcgcagggta tcggtgagca acgcaacggc gggtgcgttg
     1321 tcggcgtcgg ggattgcatc ggccgggcga gcggatcgct gcggcggcgg ccgagaaaac
     1381 gtaatcggga gagaggacgg catgggcatg gctcggtgaa cgggatgccc cgatcttgtc
     1441 cttcccgacg cctggttcca actcggccga acggctaacg cttagcaacg ctgaaaaagc
     1501 tggccgaacg gctaacccgg cccgacagct gattcgcgga ggcggaaacg gcgcaagctg
     1561 atgcaaccag aagcccaatg cgaaacccga gctgcccatg aaccgaactt cgttgctacc
     1621 cttgctttct cagcaccacg ccttgcggcc ggaatatttt cacggtgcgg atcgcctggt
     1681 cgtcgctgcg catgacttcg aaatgcacgc cggcaatacg cacgctcacg tcgccgtccg
     1741 gaatctcttc cagggtttcg agaatcaggc cgttgagcgt cttcgggccg tcggtgggaa
     1801 gcgtcagctt cagccaccgg ttcagctcgc gcaacggcat gctgccggcc acaatgcatt
     1861 cgccttcctc gttccagccg ctacgcgatc cggccccgcg tggaatggtc gtggtgaact
     1921 cgccaatcaa ttcttcaatg atgtcttcag gcgtcaccag tccctgcagc tcgccatatt
     1981 cgttcaccac aatcgcaatt cgatgccggc tctcctggaa gaattgcagt tgctgaaaca
     2041 cgggcgtccc tgccgggacg aagtacggtt cggccaacag ttcgcgcaag gtctcgcgct
     2101 cgaattcctg gttgtgcagt gccgagagcg tctttctcac gtgcagaaca cccagcacgc
     2161 gatcgatgtc gccctgatac accaccagct tgttgtgata gcaggtctcg agctgatgca
     2221 ggatggtgtc gaaggg
//
LOCUS       DATGBK010000541         6500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_307558, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000541 DATGBK010000000
VERSION     DATGBK010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6500
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307558"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..1555)
                     /gene="dalD"
                     /locus_tag="VKJ77_07755"
     CDS             complement(164..1555)
                     /gene="dalD"
                     /locus_tag="VKJ77_07755"
                     /EC_number="1.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047813 - D-arabinitol 4-dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0051161 - arabitol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-arabinitol 4-dehydrogenase"
                     /protein_id="HMC45200.1"
                     /translation="MTTESHAAADVILHIGAGSFHRAHQAWYLHKLIESGDTRWSLTV
                     GNIRGDMNAVLEALAAQNGTYTLETVTPQGERAYETIRSIKKVVPWAADLNALVAAGA
                     APECKIVSFTVTEGGYYLDEHHKLDTANPDLAADLKGARTTIYGALAAILDARMKQNT
                     GKVTLQNCDNLRSNGDRFKAGMLEFLQLRGETALRDWMIANTLCPNAMVDRITPRPTP
                     DVRERVLAATGFDDKAPVMGEAFIQWVIEDEFIAGRPAWENVGAEMVHSVLPYEEAKI
                     RILNATHSCIAWAGTLVGHQYIHEGTQDADIRALAETYVTEDVIPCLSPSPIDLAKYR
                     DVVIDRFVNPYIQDTNQRVAADGFSKIPGFIAPTLRECFARHVDPNATAMLPALFFRF
                     LERWHEGKLPYAYQDGVMDPATAHAFFEADDPVKAFVADKLLWGSLAQSADLERVLRA
                     ALDRVDAWLVKRA"
     gene            1688..1948
                     /locus_tag="VKJ77_07760"
     CDS             1688..1948
                     /locus_tag="VKJ77_07760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45201.1"
                     /translation="MIVFDSMKVKALRSISALCFCMAFFEAVRMFRRARRLLRCTKFG
                     ACTYGRGAMKRRIGGRAQFQLSDAAAMISGIVMPIDGGFTAR"
     gene            complement(2016..2843)
                     /locus_tag="VKJ77_07765"
     CDS             complement(2016..2843)
                     /locus_tag="VKJ77_07765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC45202.1"
                     /translation="MIAPTVQQLVSRAADYPFPGARIVMGEGASAGTAIAFYEGFCLA
                     SAYEPIFDVTTRGLPQSLTASVESAERFGDELGFQALTLTGDGASFDPFAQLDDDPRL
                     VELDRLSRALHAFNFFGAQRPGLLFLRVHERLLKSVKYDHGKHFSSVLIEFGLNPARI
                     VIELPPAAVAHRTFLGYLVKSYQKYGFKVAGNLPNAGQIMSVSDMARLDFIKMDAGLA
                     LRDSVVKPLVGYAHRLKIPLIFSHVEDEAQFEALQQFDVSFVQGPAFEAHAIGPGGQ"
     gene            3031..3987
                     /locus_tag="VKJ77_07770"
     CDS             3031..3987
                     /locus_tag="VKJ77_07770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC45203.1"
                     /translation="MAGEKKFASQADLAEKKVTFERLSEHAYAYTAEGDPNTGIVIGD
                     DAVLVADTQATPVMAQDVIRRIREVTDKPIKYILLTHYHAVRVLGASAYGAQQIIASQ
                     DTYDLIVERGEQDMKSEIERFPRLFNAVESVPGLTWPTLTFKGEMTLWLGKLEVKIMQ
                     LGRGHTKGDTVLWLPQDKVMLSGDLVEYGATPYCGDAYYQDWPATLDALAAFNPEKLV
                     PGRGAALKTPQQVADGIAGTRAFVSELFNQVKLGAAAGKDLNEIYKLTYAALKPKFGD
                     WVIFDHCMPFDVTRAFDEATQYRDPRIWTAQRDKEMWETLES"
     gene            4006..5673
                     /locus_tag="VKJ77_07775"
     CDS             4006..5673
                     /locus_tag="VKJ77_07775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006484900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC45204.1"
                     /translation="MAIDFQALTFDYRRSSDQDGPSSLYPVVVIGAGPVGLATAIDLA
                     QQGTPVVLLDDDHTLSSGSRAICFAKRTLEIFDRLGCGEPMVAKGVSWNVGKVFLQNE
                     LLYAFDLLPEADHARPAFINLQQYYVEGYLAERAHELPLLDARWRNKVMGITQSDECV
                     SLQIDTPDGPYTLRARYVVAADGARSLMRALMHLDTHGRTFKDRFLIADVRMKADFPT
                     ERWFWFDPPFHPNQSVLLHRQPDNVWRIDFQLGWDADPIAEKTPERVIPRVRALLGPD
                     VEFELEWVSVYTFRCQRMDKFRHARVLFAGDSAHGVSPFGARGANSGVQDADNLGWKL
                     KLVIDGDAPDALLDTYASEREAAADENIRHSTRSTDFITPKSDVSRVFRDAALRLAKD
                     CAFARRIVNSGRLSTASVLHDSSLNTPDRDAFNCALVPGAVAADAPVCFAGRNGWFLQ
                     RVGSSFAGVLFGESSDALTALKVLRPQMKLVLIVPAGSDVKSREGIEVLEDVKGLLAQ
                     RFDAQPGTFYLLRPDQHIAMRARSLEPRTVREALARATCALNETQPV"
     gene            5685..5897
                     /locus_tag="VKJ77_07780"
     CDS             5685..5897
                     /locus_tag="VKJ77_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006765057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2783 domain-containing protein"
                     /protein_id="HMC45205.1"
                     /translation="MLDTTLRLADPDAFYEALIDMHRDLGNDESQLVNAKLILLLSNQ
                     IGDMDVLREAMSMARSGVAASVAASV"
     gene            5941..>6500
                     /locus_tag="VKJ77_07785"
     CDS             5941..>6500
                     /locus_tag="VKJ77_07785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HMC45206.1"
                     /translation="MKPESPGAFTSHTETSRHYQSGFAADFASEALPGALPLGRNSPQ
                     RVNYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHQPFTQIEGDDLRARLVANFAE
                     VPPTPPNQLRWDPLPMPDAPTDFIDGWVTMAGNGAAESMQGCAIHLYAANRSMQDRFF
                     YSADGELLIVPQEGRLSIATELGRLD"
BASE COUNT         1317 a         1896 c         1985 g         1302 t
ORIGIN      
        1 ttcggaggtg ccgagatcga tgcctaaata catggacgaa cccttgatga aggctaaaag
       61 ccgcgggaaa ccggaggcgc taatgtagcg ccgctgccgg tgttacgcca ttggcaataa
      121 caccggacag gcatgaagaa gaaggagacg aagggcgaga tgcttaagcc cgcttgacga
      181 gccaggcatc gacacggtca agcgccgcgc gcagcacgcg ctccagatcg gcgctttgcg
      241 cgaggctgcc ccagagcagt ttatcggcga cgaaagcctt caccggatcg tccgcttcga
      301 agaaagcgtg cgcggtggcg gggtccatca cgccgtcctg gtacgcgtac ggcagcttgc
      361 cttcgtgcca gcgttcgagg aagcggaaga acagcgcggg caacatggcc gtcgcattcg
      421 gatcgacgtg gcgcgcaaaa cattcacgca gggtaggcgc gataaaaccg gggatcttcg
      481 agaagccatc tgcagccacg cgttgattcg tgtcctggat atacggattg acgaagcggt
      541 cgatcaccac atcgcggtat ttcgcgaggt cgataggact cggcgacagg caaggaatca
      601 cgtcttcggt gacgtaggtt tcggcgagcg cgcggatatc ggcgtcttgc gtgccttcgt
      661 gaatgtattg atgcccgacg agcgttcccg cccaggcaat acagctatgc gtcgcgttga
      721 gaatgcggat cttggcttct tcgtacggca gcaccgagtg gaccatttcc gcgccgacgt
      781 tctcccacgc cggtcgcccc gcaataaatt cgtcctcgat cacccactgg ataaacgctt
      841 cgcccatgac gggcgcttta tcgtcgaaac cggtggcagc cagcacgcgc tcgcggacat
      901 cgggagtggg gcgtggcgta atgcggtcga ccatcgcgtt tgggcacaac gtattcgcga
      961 tcatccagtc gcgcaacgca gtttcgccac gcagttgcag gaattcgagc atgccggctt
     1021 taaaacgatc gccattgctg cgcaggttgt cgcagttctg cagcgtcacc ttgcccgtgt
     1081 tctgcttcat gcgagcgtcg agaatggcgg cgagcgcgcc gtaaatcgtc gtgcgggcgc
     1141 ctttcaggtc ggcggccaga tccggattcg ccgtatccag cttatggtgt tcatcgaggt
     1201 aataaccgcc ttcggtcacc gtgaacgata cgatcttgca ctcaggcgca gcacccgccg
     1261 ctacaagcgc gttcaggtcc gctgcccacg gtacgacctt cttgatcgag cggatggttt
     1321 catacgctcg ctcgccctgc ggcgtgacgg tctccagcgt ataggtgccg ttctgtgcgg
     1381 ccagcgcttc aagcaccgca ttcatgtcgc cgcgaatatt gccgaccgtc agcgaccagc
     1441 gcgtatcgcc ggattcaatc agcttgtgca ggtaccacgc ctgatgcgca cgatgaaaag
     1501 aacccgcgcc gatgtgcagg atcacgtcgg cggctgcgtg gctttcggta gtcatgtcgt
     1561 ccttcctttg aactggatgc gcctcatgca atgccgggcg ctgtgctgtg tctcgttgtc
     1621 gtcgaaaagg gagttgacgc tgggccaaat ccgcgtttct acgatcattt gctcgttgtg
     1681 tgagcgaatg atcgtattcg attcgatgaa agtcaaggca ctgcgcagca tttccgcttt
     1741 gtgtttttgc atggcttttt ttgaggcggt gcggatgttt cgcagggccc gaaggctatt
     1801 gcgctgcacc aaatttggcg catgcacata cggacgaggc gcaatgaaaa gacgtatcgg
     1861 tgggcgggcg caatttcagt tgagtgacgc ggccgcgatg atttcaggca tcgtcatgcc
     1921 gatagatggc gggttcaccg ccaggtgatt ttcagttcgt aaaggggatg gtggacgggt
     1981 ctggacgggc gcggggtcgg gggatgccga cgatcctact gaccgcccgg cccaatcgca
     2041 tgcgcctcaa acgcgggccc ttgtacaaaa ctcacatcga attgctgaag cgcttcgaac
     2101 tgcgcttcgt cctcgacgtg actgaatatg agcggaatct ttagccggtg cgcatacccc
     2161 accaacggct tcaccacaga atccctcaac gccaaacccg catccatctt gatgaaatcc
     2221 agccgcgcca tatccgacac ggacatgatc tgcccggcat tgggcaaatt ccccgcgacc
     2281 ttgaacccat acttttgata actcttcacg agatacccga ggaaagtccg atgcgcgacc
     2341 gccgccggcg gcaactcaat cacgatccgc gccgggttca acccaaactc gatcaatacg
     2401 gaagagaagt gcttgccatg atcgtatttc acgctcttca acaggcgctc atggactcgc
     2461 aggaacagca agcccggccg ttgcgcgcca aaaaaattaa acgcgtgcaa cgcgcgtgag
     2521 agccggtcga gctcgaccag cctcgggtcg tcgtcgagtt gggcgaacgg atcgaacgac
     2581 gcgccgtcgc cggttagcgt cagcgcctga aaaccaagtt catcgccgaa acgctcagca
     2641 ctttccaccg atgccgtcag cgattggggc aagcctcgcg tggtgacatc gaagatgggc
     2701 tcatacgcgc tcgccaggca aaagccttcg taaaacgcga tggccgtgcc cgcgcttgcc
     2761 ccctcgccca tgacaatgcg cgcgccggga aaagggtagt ccgcggcgcg agaaacaagt
     2821 tgctggacgg ttggggcaat catgaagggg aaggtgtgag aggtgtagcg tcgatggtag
     2881 cagcgctgcg catgacgcct tgcacaaaat ccacatattc atatgaaccg aaacccattc
     2941 tccgcatatg actagggtta acaataattt cacttaacgt aattcgtttt accattcgta
     3001 attgaggcga caatccatta ggagactttc atggctggtg agaagaaatt cgcgtcgcag
     3061 gctgacttgg cggaaaagaa ggtgacattc gagcgcctgt ccgagcacgc ctatgcgtac
     3121 acggcagagg gcgatccgaa tacgggcatt gtgattgggg acgacgcggt gctcgtcgcc
     3181 gacacgcaag ccacgccggt catggcgcaa gacgtgattc gccggatccg cgaagtgacc
     3241 gacaaaccca tcaaatacat cctgctcacg cactaccacg cggtgcgagt gcttggtgcg
     3301 tcggcgtatg gcgcgcagca gatcatcgca agccaggaca cgtatgacct gatcgtcgag
     3361 cgtggcgagc aggacatgaa gagcgagatc gagcgttttc cgcgcctgtt caatgcggtg
     3421 gaatcggtgc cggggctcac gtggccgacg cttaccttca agggtgagat gacgctctgg
     3481 ctgggcaagc tcgaagtgaa gatcatgcag ctcggccgag gtcacaccaa aggcgatacc
     3541 gtgctgtggt tgccgcaaga caaggtgatg ctgtccggcg atttggtcga atacggcgcg
     3601 acgccttatt gcggcgatgc ctattaccag gactggccgg caaccctcga cgcgctcgcg
     3661 gcgttcaatc ccgagaagct ggtaccgggg cgcggcgcgg cgctgaagac gccgcaacaa
     3721 gtggcggacg gtatcgcggg aacgcgggct ttcgtgagcg aactgtttaa tcaggtgaag
     3781 ctgggcgccg cagcgggcaa ggacctgaac gagatctaca agctcacgta cgcagcgctc
     3841 aagccgaagt ttggcgactg ggtcatcttc gatcactgca tgccgttcga tgtcacccgc
     3901 gccttcgacg aagccacgca atatcgcgat ccgcgcatct ggacggcgca gcgcgacaag
     3961 gaaatgtggg aaacgctcga aagctgattg gcgaagacca tgaccatggc tatcgacttt
     4021 caggcgctca cgttcgacta tcgccgctca tccgatcaag acggcccctc gtcgctgtac
     4081 ccggtcgttg tgatcggcgc ggggccggtg ggtctcgcga ccgcgatcga cctcgcgcag
     4141 cagggcaccc cggtcgtact gctcgacgat gaccatacgt tgtcgtcggg atcgcgcgct
     4201 atttgctttg caaaacgtac gcttgagatc ttcgatcggc taggctgcgg cgagccgatg
     4261 gtcgcgaagg gcgtgagctg gaacgtgggc aaagtgttcc tgcaaaatga actcctctac
     4321 gcgttcgatt tgctgcccga agcggatcat gcgcggcccg cgtttatcaa tcttcagcag
     4381 tattacgtcg aaggatatct ggctgagcgg gcgcacgagt tgcccttgct cgatgcccgc
     4441 tggcgcaaca aggttatggg tattacgcag tcggacgaat gcgtttcgct gcagatcgat
     4501 acgcctgatg gtccgtacac gttgcgtgcg cgttacgtgg tcgccgccga tggtgcgcgc
     4561 agtctcatgc gtgcactcat gcatctcgat acccacggcc gcacgttcaa ggatcgcttc
     4621 ctgatcgccg acgtacggat gaaagccgac ttcccgaccg agcgctggtt ctggttcgat
     4681 ccaccgtttc atccgaatca atcggtgttg ctgcatagac agccggacaa cgtgtggcgt
     4741 atcgatttcc agttgggatg ggacgccgac cccatcgcgg agaaaacgcc cgagcgtgtg
     4801 attccgcgtg tgcgcgcgtt gctcggaccc gacgttgaat ttgaactgga atgggtgagc
     4861 gtctatacgt tccgatgcca gcgcatggat aagtttcgtc acgctcgtgt gctgtttgcg
     4921 ggcgattcgg cgcatggcgt atcgccgttc ggcgcgcgcg gcgcgaacag cggcgtgcag
     4981 gacgcggaca atcttggctg gaaattaaag ttggtgatcg acggcgatgc gcccgacgcc
     5041 ttgctcgaca cctacgctag cgagcgcgaa gccgccgccg atgaaaacat ccggcactca
     5101 acacgctcaa ccgatttcat cacgccgaag agcgacgtat cccgcgtgtt ccgtgacgcc
     5161 gctttgcggc tcgcgaaaga ttgcgcgttt gcgcggcgga tagtgaatag cgggcggtta
     5221 tcgacggctt cggtgctgca tgactcatcg ttgaacacgc cggatcgcga tgccttcaat
     5281 tgcgcgctcg tgccgggtgc agtggcagcg gatgcgcctg tgtgtttcgc cggccgcaac
     5341 ggatggttct tgcaacgcgt ggggtcgtcg tttgcggggg tactgtttgg tgagtcctcg
     5401 gatgcgctga ccgcgttgaa agttttgcgc ccgcaaatga agcttgtctt gattgtgccg
     5461 gcgggttctg acgttaaatc gcgcgaaggc attgaggtac tggaagacgt gaaaggtctc
     5521 ctggcccaac gtttcgatgc ccagcccggc acgttctacc ttctgcgacc ggaccagcac
     5581 atcgcaatgc gcgctcgttc gttagaaccc cggaccgtcc gcgaagcact cgcccgcgcg
     5641 acttgcgccc tgaacgaaac ccagcctgtg tgatgaggcc cgccatgcta gataccacct
     5701 tgcgcctcgc cgatcccgat gccttctatg aagcactcat cgacatgcat cgcgacctcg
     5761 gcaacgacga aagccagcta gtgaacgcga aactgatcct gctgctgtcg aaccagatcg
     5821 gcgatatgga tgtattgcgc gaagcgatgt cgatggcgcg aagcggcgtt gcggcctccg
     5881 ttgcagcctc cgtttaaggt tcaaccgaca gcgtatgaaa ttgtagaaaa ggacaagccc
     5941 atgaaaccag agtcgccagg cgcattcacg agtcacaccg agacgagccg ccactatcag
     6001 tcgggcttcg ccgcagactt cgcctccgag gcgttgcccg gcgcgctgcc gctcggccgc
     6061 aattcaccgc agcgtgtgaa ctacggcctg tatgccgagc agctttcggg caccgcgttc
     6121 actgcgccgc gcgggcacaa ccggcgctct tggttgtatc ggatacggcc ggcggcggtg
     6181 catcaaccgt tcacgcagat cgaaggcgat gacctgcgcg cgaggctcgt cgcgaacttc
     6241 gccgaggtgc cccccacgcc gccgaatcag ctgcgctggg acccattgcc gatgcccgat
     6301 gcgcccacgg atttcatcga tggctgggtg acgatggctg gcaacggcgc ggccgaatcc
     6361 atgcaaggct gtgcgattca tctctacgcc gcgaaccgtt cgatgcagga tcgcttcttc
     6421 tatagcgccg atggcgaact gctgatcgtg ccgcaggaag ggcgcttatc gattgcgact
     6481 gaactcggcc ggctcgatat
//
LOCUS       DATGBK010000542         2160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_192223, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000542 DATGBK010000000
VERSION     DATGBK010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192223"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            220..1248
                     /locus_tag="VKJ77_07790"
     CDS             220..1248
                     /locus_tag="VKJ77_07790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC45207.1"
                     /translation="MSTTLDTLTPVARHLPALRWTGAGAVVVALGLAPLVLGGYYLHA
                     LIIAMIFLLPAHGLNLILGYTGMLSLAQGVFFGVGAYVSALLSLHFGTPFALNLVASG
                     VIAAAIALPLGIPALRLRTYSFVMCTLGFVVIAQTVAKNWIGMTRGDMGLSGVPQPKF
                     QIGNAVLTISTIPDYYYLALVVAIIATLGFYALVKSPAGRCMVAIRDNEVLAESLGVP
                     TWAYKLAVFMLSALFAGVGGSLYAHYMTVVSPLVFQMYYSTTVLVIVLGGGVGRVPGA
                     VIGSLLFVALSEALRVTPELRMIIYGFVLLLLVFCFPDGLAPLLDRALERIARIRFGA
                     KEGNSDVH"
     gene            1238..2014
                     /locus_tag="VKJ77_07795"
     CDS             1238..2014
                     /locus_tag="VKJ77_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45208.1"
                     /translation="MSTNQDTILSVEGLRKRYGGVPALQGVDFNIRRGEVCGLIGPNG
                     SGKSTLFDCCTGLQRSDSGKVVLNGRDITGWSMNRISREGRLVRSFQKTVVFHSLNAE
                     ENLVLAGQMSSFPGLLSTFSIGPGASRRVRRLRERAVELIEVAGLQRVAHLPAGNMSG
                     GQQKLLQFALMLMPEPELILLDEPLAGINPMLIEKVIESIRDANRRLGVTFVVIEHNT
                     DVLMDLSHRVIVLHQGTKLAEGEPESIVRNPQVIEAYLGV"
     gene            2020..>2160
                     /locus_tag="VKJ77_07800"
     CDS             2020..>2160
                     /locus_tag="VKJ77_07800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45209.1"
                     /translation="MMLEIEGLRAGYGHLEILHGVDLRIRHGEFVTLLGPNGAGKSTL
                     LKT"
BASE COUNT          360 a          649 c          686 g          465 t
ORIGIN      
        1 gtgtggccga gagcctggtc gccggttcga tcggtttgca ataccgcgac agcgtcggct
       61 tcatcgcgct tctgctaatg ctgatgtgca ggcccacggt tctcttcagc ccgaaggcgc
      121 gtttctgacc atggtccgct ccttcgcctg gtctgctcat tggcacgacg ccacaaccgg
      181 atgccggcgc gtccgggctc atctaatgga tcgctaatca tgtctactac tctcgatacc
      241 ttgacacctg ttgcgcgcca tctgccagcc ctgcgctgga ccggtgcagg ggcggttgtc
      301 gtagccctgg gtcttgcgcc actcgtgctc ggtggctact acctgcacgc actgatcatc
      361 gcgatgatct ttttgctgcc ggcgcatggg cttaacctga tcctcgggta cacgggcatg
      421 ctgtcgctcg cacagggtgt tttctttggt gtcggcgcgt atgtctccgc gctgctgtcc
      481 ctgcatttcg gcacgccgtt tgcattgaac ctggtggcga gcggtgtgat tgccgcagca
      541 atagcgctgc cgctcggcat tccggcgctg cgcttgcgga cctactcgtt cgtcatgtgc
      601 acactgggct tcgtggtcat cgcgcaaacg gtagcgaaaa actggatcgg catgacgcgc
      661 ggcgacatgg gactctccgg cgtgccgcaa ccgaagttcc agattggcaa cgccgtgctc
      721 accatcagca cgatccccga ctactactat ctcgcgctgg tcgtagcgat cattgccaca
      781 ctcggattct atgcactggt caagtcgcca gccggccgct gcatggtcgc gatccgcgac
      841 aacgaagtgc tggccgagtc cctcggcgtg ccgacctggg cgtacaagct ggcggtcttc
      901 atgctgagcg cgctgtttgc cggcgtcggc ggaagcttgt acgcgcatta catgacggtg
      961 gtgagtccgc tggtcttcca gatgtattac tcgaccacgg tcctcgtcat cgtgctcggc
     1021 ggcggggtgg ggcgagtgcc cggcgcggtg atcggcagcc tgctgttcgt cgcattgtcg
     1081 gaggcactgc gcgtcacgcc tgaactgcgc atgatcatct atggtttcgt gttgctgctg
     1141 ctggtgttct gctttcctga cggcctggcg ccgctcctcg atcgcgcact cgaacgcatc
     1201 gcgcggattc gcttcggcgc aaaggaagga aattccgatg tccactaatc aagacacgat
     1261 ccttagtgtt gagggcctgc gcaaacgcta cggcggcgtg cctgcattgc agggcgtgga
     1321 cttcaacatc cggcgcggag aagtgtgcgg actgatcggt ccgaacggtt cgggcaagtc
     1381 gacgctgttc gactgttgca caggcttgca gcgcagcgac agcggcaagg tggtcctgaa
     1441 cggccgcgac atcaccggct ggtcgatgaa ccgtataagc cgcgaagggc gcctcgtgcg
     1501 cagctttcag aagaccgtgg tgttccacag tctgaatgcg gaagagaacc tggtgctcgc
     1561 gggccagatg tcgagttttc ccgggctgct gtcgactttc tcgatcggac cgggcgcatc
     1621 gcgccgtgtg cggcgcctgc gtgagcgagc ggtcgagctg atcgaagttg ccgggttgca
     1681 gcgtgttgcg cacctgcctg ccgggaacat gtccggcggc cagcagaagt tgttgcagtt
     1741 cgccctgatg ctcatgcccg agccggaact gatcctgctc gacgaaccgc ttgcgggtat
     1801 caacccgatg ctgatcgaga aggtgatcga gagcatacgc gacgcgaacc gccgtctcgg
     1861 cgtgaccttc gttgtcattg aacacaacac cgatgtgctg atggatctgt cgcaccgcgt
     1921 gatcgtgctg caccagggca cgaagctcgc ggaaggcgag ccggagtcga tcgtgcgtaa
     1981 cccgcaggtc atcgaagcgt acctgggagt gtgacggcaa tgatgctcga aattgaaggc
     2041 ctgcgtgcag gctacggtca cctggaaata ctgcacggcg tggatctgcg catcaggcac
     2101 ggcgagttcg tcacgctgct cggtccaaat ggagccggca agtcgaccct gctgaagacc
//
LOCUS       DATGBK010000543         1847 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_284579, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000543 DATGBK010000000
VERSION     DATGBK010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284579"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..502)
                     /locus_tag="VKJ77_07805"
     CDS             complement(<1..502)
                     /locus_tag="VKJ77_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HMC45210.1"
                     /translation="MKSITSRDNPLYKRLKALAGSTAQQRRSGHALLEGLHLASAYLD
                     AAGQPETCVVTEGALQHEEAQQIVGRIDPAHVYTLPDALFGQLSSVSHGVGMVLLVEK
                     IAPLLPERIIGTCLVFDGIQDAGNVGSILRSAAAAGVQHVFCVPGTVFAWSSKVLRAG
                     MGAHFLL"
     gene            complement(514..1251)
                     /gene="rnhB"
                     /locus_tag="VKJ77_07810"
     CDS             complement(514..1251)
                     /gene="rnhB"
                     /locus_tag="VKJ77_07810"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HMC45211.1"
                     /translation="MAKIVVKGVVRRAGRQALQPAFDFDVDAPSDVICGVDEAGRGPL
                     AGPVVAAAVIFDPSKPRIRGLDDSKVLSAKKREELYEKIIDRALAYCVASASVEEIDT
                     INILHATMLAMKRAVEGLSVTPTVTKIDGNRCPRLSMRSVAVIGGDALIAQISAASIL
                     AKVTRDRMLLQLHEVHPVYGFDAHAGYGTPQHLRALLEHGPCEHHRRSFAPVREAHAR
                     LGMVLPVVAAGVLEAATAEHGVDAPPF"
     gene            complement(1251..>1847)
                     /locus_tag="VKJ77_07815"
     CDS             complement(1251..>1847)
                     /locus_tag="VKJ77_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HMC45212.1"
                     /translation="EGGPIIAVLPGSRRSEIALIGLTFFDAMELMQRREPGVRFVMPA
                     ATAALRELLQPLVAAHPNLPLTITEGNAQVAMTAADAILVKSGTVTLEAALLKKPMVI
                     SYKVPWLTGQIMQRQGYLPYVGLPNILAGRFVVPEILQHFATPEALADATLKQLNDDA
                     NRATLTEIFTEMHHALRQNTAQRAAEAVAQVLETRRPR"
BASE COUNT          386 a          612 c          516 g          333 t
ORIGIN      
        1 cgagcaggaa atgtgcaccc atgccagccc gcagcacctt cgatgaccac gcaaacaccg
       61 tcccgggcac gcaaaacaca tgctgaacgc ccgccgctgc ggcactccgc aagatggatc
      121 cgacattgcc ggcatcctgg atgccatcga aaaccaagca cgtcccgatg atgcgttcgg
      181 gcaacaatgg cgcgattttc tcgaccagca acaccatccc cacaccatgc gagacactcg
      241 atagctgtcc gaacaaagca tcgggtaacg tataaacatg cgcgggatcg atccgcccga
      301 caatctgctg ggcttcttcg tgttgaagcg cgccttcagt tacgacgcac gtctcaggct
      361 gcccggccgc atcaagatat gcgctggcaa gatgcaaccc ttcgagcaac gcgtgaccgc
      421 tgcggcgctg ctgcgcggtc gatccggcaa gcgccttcag gcgcttgtaa agcgggttat
      481 cccgcgaggt aatggatttc acttggggaa aattcagaac ggaggagcgt cgacgccgtg
      541 ttccgcggta gccgcttcca gcaccccggc tgctacaacc ggcaacacca tacccagtcg
      601 cgcatgcgct tcacgaacag gcgcaaacga acgccgatga tgttcgcaag gcccgtgttc
      661 aagcaacgcc ctcaggtgct gcggcgtgcc gtaaccggcg tgggcatcga aaccatagac
      721 agggtggact tcgtgcaatt gcagcagcat ccggtcgcgc gtgactttag ccagaattga
      781 agccgccgaa atctgcgcaa tcaacgcgtc gccaccaata acagccaccg aacgcatcga
      841 caaccgggga caccggttac cgtcgatctt ggtaaccgtc ggcgtgaccg acagcccttc
      901 caccgcgcgt ttcatcgcga gcatggtggc gtggagaatg ttgattgtgt cgatttcctc
      961 aacagacgcc gaagccacgc aataggccag cgcacggtcg atgatcttct cgtacaactc
     1021 ctcgcgtttc ttggcgctca acaccttcga gtcgtcaagt ccgcgaatcc tgggtttcga
     1081 tggatcgaag atcaccgccg ccgcaaccac gggacccgcc agcgggccac ggccggcttc
     1141 gtcgacgccg caaatgacgt cggacggcgc atcgacatcg aagtcaaacg caggctgcag
     1201 cgcttgccgc cctgcgcgcc gtaccacgcc tttcacgacg atcttcgcca ttaccgcggc
     1261 ctccgcgttt ccagcacctg cgccacggcc tccgcagcac gttgagccgt gttctgacgc
     1321 agcgcgtggt gcatttccgt gaagatttcc gtcagtgtcg cgcggttcgc atcgtcgttc
     1381 aactgtttca gcgtggcgtc ggcgagcgct tcgggcgtgg cgaaatgctg gagaatctcc
     1441 ggcacgacaa accgcccggc cagaatattc ggcaagccga catacggtaa ataaccctgc
     1501 cgttgcatga tctggcccgt cagccaaggc accttgtacg agatgaccat cggctttttg
     1561 agcaatgccg cttccagcgt caccgtgccg ctcttgacca ggatggcgtc ggcggcggtc
     1621 atcgcgacct gcgcgttccc ttcggtgata gtcagcggca gattcggatg cgcggcaacc
     1681 agcggctgca acaattcgcg caacgcggca gtcgctgccg gcatcacgaa acgcacgcca
     1741 ggttctcgac gctgcatcag ttccatcgca tcgaaaaacg tcaggccgat cagcgcgatc
     1801 tccgatcgcc ggcttcccgg caacaccgcg atgatcggac cgccttc
//
LOCUS       DATGBK010000544         3051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_215089, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000544 DATGBK010000000
VERSION     DATGBK010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215089"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..117
                     /locus_tag="VKJ77_07820"
     CDS             <1..117
                     /locus_tag="VKJ77_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choline ABC transporter permease subunit"
                     /protein_id="HMC45213.1"
                     /translation="LDRITESFGRSPGMARAPLLSGLRSVMRVRRAPAAQQS"
     gene            188..1192
                     /locus_tag="VKJ77_07825"
     CDS             188..1192
                     /locus_tag="VKJ77_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlxA family transcriptional regulator"
                     /protein_id="HMC45214.1"
                     /translation="MKRDAMVPDRIHPPENSPLSKLAHFGFLTLPNFSMIAFTSAIEV
                     LRMANYVGRAEHYTWSVITPDGEPARASNGITVKPTKTLAEAGMPDVLIVCAGWHVRD
                     YVDDRVIALLQHVAAQGVPLGGVCTGAYALLAANLLDGYRCTVHWEDMSPLHKRFPDV
                     RFADELFVIDRDRVTCTGGTAPLDLMLNLVGQRLGQAHAAQVSEQFIVERIRGTTDYQ
                     HIPVDARVGFSRAELIEVVRLMEANIEEPLSLEELARLVKLSQRHLQRMFKMFLSVSP
                     THYYLTLRLRRARELLRNTDASISRVTAVCGFHSPCHFSKAYRAQFGHAPSIERRQSA
                     "
     gene            1271..2227
                     /locus_tag="VKJ77_07830"
     CDS             1271..2227
                     /locus_tag="VKJ77_07830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009896393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choline ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC45215.1"
                     /translation="MKLHGIASSCALAVLLNVTMSGGAFAADPATCQNVRFADVGWTD
                     IAATTGLATTVLQGLGYKPTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIVEPFQK
                     AGQVKVLASPNLTGAKYTLAVPDYAYNGGLKSFADIAKNYDKLDGKIYGIEPGNDGNA
                     LIKKMIDSNQYGLGKFKMVESSEAGMLVEVGRAIREKKWIVFLGWEPHPMNVTMKIDY
                     LSGGDDVFGPNYGEAKVLTVTPPDYAARCPNVAKLVDNLRFSTDIENHVMTPIMNKTD
                     PNVAAKQWLKANPAVLDKWLAGVKTFDGKDGLPAVKAYVAAQ"
     gene            complement(2282..>3051)
                     /locus_tag="VKJ77_07835"
     CDS             complement(2282..>3051)
                     /locus_tag="VKJ77_07835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GlxA family transcriptional regulator"
                     /protein_id="HMC45216.1"
                     /translation="SRAATTDATLVGICTGVFSLMRAGVLDGYRICVSWFHYWDFVER
                     FPGVNEEMLVADRLFVMDHRRITCSGGRASIDVAAAILLRHFEAATVQKALRILLVDD
                     MQKGNAPQPHPPGLAPATHPKVKRAILLMEQHVGRSLTLDELAHKLDLSTRQLERLFK
                     AETGKAPQAYAKQVRLRTAAWLLTSSDKTVADIASSCGFSDASHLGREFRKQFGLPPM
                     MYREQRGTAAPDDAASAATLDLAADFDETFPGRAQAI"
BASE COUNT          618 a          853 c          961 g          619 t
ORIGIN      
        1 cttgaccgca tcacggaaag ctttggccgg tcgccgggta tggcgcgggc gccgttgttg
       61 tcgggacttc gcagcgtgat gcgcgtgcgc cgcgcgccgg ctgcgcagca gagctgagca
      121 gcaaaataag caatcaggca gcgaagtaga agtaaagcca ggccagggcc ctaaggataa
      181 aaacccgatg aaacgcgacg cgatggtgcc ggacaggatt caccctcctg agaattcacc
      241 gttatcgaag ctggcgcact tcgggttcct gacgctgcct aatttttcga tgatcgcgtt
      301 caccagcgca atcgaagtgt tgcgcatggc gaactacgtt ggccgggccg agcactacac
      361 gtggtcggtg atcaccccgg acggcgaacc ggcgcgcgcg agcaacggca tcaccgtgaa
      421 gccgacgaaa acgctggccg aagcgggcat gcccgacgtg ctgatcgtct gcgcgggctg
      481 gcatgtgcgt gattacgtgg atgacagggt gattgcgttg cttcagcacg tcgcggcgca
      541 aggcgtgccg cttggcggcg tgtgcacggg cgcgtatgca ttgctcgcgg cgaacttgct
      601 ggatgggtat cgctgcacgg tgcattggga ggacatgtcg ccgttgcaca agcgtttccc
      661 cgacgtgcga ttcgccgatg aactctttgt gatcgaccgt gatcgcgtga cttgcacggg
      721 cgggaccgcg ccgcttgacc tgatgctgaa cctggttggc cagcggcttg ggcaggcgca
      781 tgcggcgcag gtgtccgagc agttcattgt ggagcgcatt cgcggcacga ctgattacca
      841 gcatattccc gtcgatgccc gcgttggctt ttcgcgtgcc gagttgattg aagtggtgcg
      901 gctgatggag gcgaacattg aggagccttt gtcgcttgaa gagcttgcgc ggctggtgaa
      961 gctttcgcag cgtcatttgc agcgcatgtt caagatgttc ctgagtgttt cgccgacgca
     1021 ttattacctc acgttgcggc tgcggcgggc gcgtgagctg ttgcgcaata ccgatgcatc
     1081 gatctcgcgt gtgacggccg tttgcggttt tcattcgccg tgtcatttca gcaaggcata
     1141 ccgcgcgcag tttggccacg cgccgagtat tgagcgcagg cagtcggctt gatgatccat
     1201 ttttagacgt ggtgcgctca ttggggcgcg gcatcgtcgt gtctggcagt ttccaaaata
     1261 gggagaaaac atgaaacttc acggaatcgc gtcgtcgtgc gcgctggctg tcttgctgaa
     1321 tgtcacaatg tccggcggcg cgtttgcggc tgatccggcc acgtgccaga acgtccgttt
     1381 cgccgacgtg ggctggaccg atatcgccgc gaccacgggt ctggcgacca ccgtgctgca
     1441 gggcctcgga tacaaaccga cgaagacgat tgcgtcggtg cctattactt ttgccggtat
     1501 caagagcaag cagatcgacg tattcctggg ttactggtcg ccgacgatgg accccattgt
     1561 cgagccgttc cagaaagcgg gccaagtcaa ggtattggca tcgcctaacc tgacgggggc
     1621 gaaatacacg ctggcggtgc cggactatgc gtataacggc ggcctgaagt cattcgccga
     1681 tattgccaag aactacgaca agctcgacgg caagatctac ggtattgagc cgggtaacga
     1741 cggcaatgcg ttgatcaaga agatgatcga ttcgaatcag tatgggcttg gcaagttcaa
     1801 gatggtggag tcgagcgagg ccggcatgct ggtggaagtg ggtcgtgcaa ttcgcgagaa
     1861 gaagtggatt gtgttcctgg gttgggaacc gcatccgatg aacgtgacga tgaagattga
     1921 ttatctgagt ggtggcgacg atgtgttcgg gccgaactat ggtgaagcca aggtgttgac
     1981 ggtgacgccg ccggattatg ctgcgcgctg cccgaatgtg gcgaagctgg ttgataacct
     2041 gcggttttca acggacatcg agaatcacgt gatgacgccg atcatgaaca agaccgatcc
     2101 gaatgtcgct gcgaagcagt ggttgaaggc gaatccggcc gtgctggata aatggctggc
     2161 tggggtgaag acgtttgacg gcaaggatgg attgccggct gtgaaggctt atgtggcagc
     2221 gcagtaaagt ttgttcgcgc cggtggacca ataggggtct gccggcgcgg gcggcaaaga
     2281 tctaaatagc ctgagcccga cccggaaaag tctcatcaaa atccgcggca aggtcgagcg
     2341 tcgctgcgct cgctgcatcg tccggcgcag ccgtgccacg ctgctcgcgg tacatcattg
     2401 gcggaagccc gaactgcttc ctgaactccc gccccaaatg cgatgcatcg gaaaaaccgc
     2461 aactcgatgc aatgtccgcc accgtcttgt ccgaactcgt cagcaaccat gccgctgtcc
     2521 gcaacctgac ctgcttcgca taggcctgcg gcgccttgcc cgtttccgcc ttgaacaaac
     2581 gctccaactg ccgcgtcgat aaatccagct tgtgcgcaag ctcatcgagc gtcaacgaac
     2641 gccccacatg ctgctccatc agcaggattg cccgcttcac tttcggatgc gtggcaggcg
     2701 caagccccgg cggatgcggc tgcggcgcat tgcccttctg catgtcgtcc accagcaaaa
     2761 tgcgcaacgc cttttgtacc gtggccgcct cgaaatggcg cagcaggatt gccgcggcaa
     2821 cgtctattga cgcccgtcca cccgaacacg taatgcgccg gtgatccatc acgaacagac
     2881 ggtctgcgac gagcatttcc tcattcacac ccggaaaacg ctcgacgaaa tcccagtagt
     2941 gaaaccagct cacacagatg cggtaaccgt ccagcacgcc cgcccgcatc agcgaaaaca
     3001 cacccgtgca aatgccgaca agcgtggcgt ccgtggtcgc ggcgcgagat c
//
LOCUS       DATGBK010000545         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_53271, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000545 DATGBK010000000
VERSION     DATGBK010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53271"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..>2253)
                     /locus_tag="VKJ77_07840"
     CDS             complement(63..>2253)
                     /locus_tag="VKJ77_07840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HMC45217.1"
                     /translation="SSGIAGNLAPNPSTGSRPIETHGLNGSFTHPEPATPNTTTSPNT
                     SPSTETQTPARTPVHLADLPPWAVRAGQSHPVQTTRDIAPATPASPLSGGPATASTGQ
                     VHTPPWQSDAGAARPPFRVVDAPHATPDGTNANVETSTDTPPAPLAANGYATQTQTPT
                     DRTAQTEWEPATEAQADPNTDHASNVVHFPRASASASTSANVSSAPAPETTPQQPDSR
                     PPVRGFIATEFEFHAPAASAVDLPGLDLLEPASDEVEPVSEQHLAETGQLIEQRLQEF
                     KVPVTVVGASAGPVITRFEVEPALGVRGSQIVGLMKDLSRGLGLTSIRVVETIPGKTC
                     MGLELPNAKRQMIRLSEILEADVYRDSKSFLTIAMGKDIVGNPVVTDLARAPHMLVAG
                     TTGSGKSVAINAMILSLLYKAKPEDVRLIMIDPKMLELSVYEGIPHLLAPVVTDMKLA
                     ANALNWCVGEMEKRYKLMSAVGVRNLQGFNQKVRNADAAGKKLTNPFSLTPDAPEPLA
                     KLPMIVVVIDELADLMMVAGKQIEQLIARLAQKARAAGIHLILATQRPSVDVITGLIK
                     ANIPTRVAFQVSSKIDSRTILDQMGAESLLGAGDMLFLPPGTGYPQRVHGAFVADEEV
                     HSVVEYLKQFGEPEYEEGILSGPTPEGGTPDLFGDTPDAEADPLYDEAVSFVLRTRRA
                     SISSVQRQLRIGYNRAARLVEQMETAGLVSPMGTNGNREVLAPGPSE"
BASE COUNT          364 a          688 c          740 g          461 t
ORIGIN      
        1 agttcagtgg cgagtggcca gcgcccgggc acaacgcccg gcaacgaaaa tccgctagcc
       61 gcttattccg atggtcccgg tgcgagcact tcgcggtttc cattcgtgcc catcggtgaa
      121 accaggcccg ctgtttccat ctgttcgacc agccgcgccg cgcggttata gccaatgcgt
      181 aattgccgct ggactgacga aatcgatgcc cggcgcgtgc gcaacacgaa cgacacggct
      241 tcgtcgtaaa gcggatcagc ttcggcatcc ggcgtatcgc cgaacaggtc cggcgtgcca
      301 ccttcgggcg tcggtcccga caagatccct tcctcgtact ccggttcgcc gaactgcttc
      361 agatactcca cgacactgtg cacttcttcg tccgcgacaa acgcgccatg cacgcgttgc
      421 ggataacccg tgccgggcgg caggaacaac atatcgccgg cgccgagcag ggactccgcg
      481 cccatctggt cgaggatcgt gcgcgaatca attttcgatg acacctgaaa cgccacccgc
      541 gtcggaatgt tcgccttgat cagcccggtg atcacatcta ccgacggccg ctgcgtcgcg
      601 agaatcaggt gaatgccggc ggcgcgcgcc ttctgcgcca gccgcgcgat cagctgctcg
      661 atctgcttgc ccgcgaccat catcaagtcg gcgagctcgt cgattacgac cacgatcatc
      721 ggcagtttgg cgagcggttc gggtgcgtcg ggcgtgagcg agaacgggtt cgtcagcttc
      781 ttgccagctg cgtcggcatt gcgtactttc tggttgaaac cctgcagatt acgcacgccc
      841 actgccgaca tcagcttgta gcgcttctcc atttctccga cacaccagtt cagtgcgttc
      901 gcggccagct tcatgtcggt gaccacaggc gcgagcagat gcggaatgcc ttcgtacacc
      961 gacagttcca gcatcttcgg gtcgatcatg atcaggcgca cgtcttccgg ttttgccttg
     1021 tagagcagcg acaggatcat cgcgttgatc gccaccgact tgccggaacc cgtcgtgccc
     1081 gcgaccagca tgtgcggcgc gcgcgcgagg tcggtcacga ccggattgcc gacgatgtcc
     1141 ttgcccatcg cgatcgtcaa gaacgacttt gaatcgcgat aaacatcggc ttccaggatt
     1201 tcggagagcc ggatcatctg ccgcttggcg ttcggcagtt cgagccccat gcaggtcttg
     1261 ccgggaatcg tttcgaccac gcggatggat gtgagcccaa gcccgcgcga caggtccttc
     1321 atcaggccga cgatctggct gccgcgcacg ccaagcgccg gttcgacttc gaagcgcgtg
     1381 atgaccggtc ccgccgatgc cccgaccacg gtcaccggta ctttgaattc ctgcaggcgc
     1441 tgctcgatca actggccggt ttcggcgaga tgctgctcgg agacgggttc gacttcgtcg
     1501 gatgcgggtt cgaggagatc gaggccgggg agatcgacgg ccgacgccgc tggcgcgtgg
     1561 aactcgaatt cggtcgcgat gaaaccacgt acgggcggac gggaatcggg ttgctgcgga
     1621 gttgtttcag gcgcaggagc tgagctcacg ttcgcactcg tgctggcact cgcactggcg
     1681 cgcgggaagt ggacgacgtt cgacgcgtgg tccgtgttcg ggtctgcttg tgcttcggtc
     1741 gcgggttccc attccgtttg cgcggttcgg tccgttggcg tttgcgtttg tgtcgcatat
     1801 ccgttcgcgg cgaggggggc gggaggggtg tcggtgctcg tttcgacgtt tgcgttggtt
     1861 ccgtccggcg tcgcgtgtgg ggcatcgacg actctgaacg gcggacgtgc ggcgcccgca
     1921 tctgattgcc acggcggcgt gtggacctga cccgtggacg cggttgcggg gcctcccgat
     1981 aacggcgatg ccggtgtcgc cggggcgatg tcacgcgtcg tttgcacggg atgcgattga
     2041 ccggcgcgga cggcccatgg cgggagatcg gcgagatgaa ctggcgtgcg cgctggtgtt
     2101 tgcgtttccg tagagggcga cgtattgggc gacgtcgtcg tgttcggcgt tgccggttcc
     2161 gggtgcgtaa atgaaccgtt caggccatgg gtttcgatcg gcctcgaacc ggtcgatggg
     2221 ttgggcgcga gattgcccgc aataccggaa gag
//
LOCUS       DATGBK010000546         2414 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_307630, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000546 DATGBK010000000
VERSION     DATGBK010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307630"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..278)
                     /locus_tag="VKJ77_07845"
     CDS             complement(<1..278)
                     /locus_tag="VKJ77_07845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HMC45218.1"
                     /translation="MTITIPALPGPFTFDPSTTALVIIDMQRDFIEPGGFGESLGNDV
                     SLLAQIVPTVSALLALARESGWFVIHTRESHAADLSDCPPAKRLRGAP"
     gene            complement(304..1914)
                     /locus_tag="VKJ77_07850"
     CDS             complement(304..1914)
                     /locus_tag="VKJ77_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45219.1"
                     /translation="MSTPSHALEVEVHNAGKSFGAFRALDNVSIKVRPGTVHALLGEN
                     GAGKSTLVKGLVGYGLLDEGQISADGREVRIASPRDAQALGIGMVYQHFTLASGLSVE
                     ENLLLARGSLPWKIDWTAEREALDAFMRRMPFRLPLNAPVSGLAAGEKQKLEILKQLY
                     LRQRFLILDEPTSVLTPQEADEVLGLMRDLTTRGELTVLMITHKFREVMAYADDVTVL
                     RKGRQVGTSAVSATSRDALAGLMMGAAETRDTAVMDAVNAERVARKPVDPAARIRLAM
                     RNISIDDDRGHAAVKRASLAVRSGEILGIAGVSGNGQKELVEALVGQRRLKMGEMEIA
                     GDAYHATREEMTQRRVFAIPEEPLKNACVASMSVAQNLALRDFDRTPLRRGGWRLDRR
                     AMRDRAAHLIDDFNVRPPLPERAIGTLSGGNVQRAVLARELGQPVDVLIVANPVFGLD
                     FASVADIHARIMAARDAGAAVLLVSEDLDELLELADRIVVIAEGELVYETPAASAERA
                     TLGHYMAGHGDSTAQAVPAAEAAKEVIV"
     gene            complement(1917..>2414)
                     /locus_tag="VKJ77_07855"
     CDS             complement(1917..>2414)
                     /locus_tag="VKJ77_07855"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HMC45220.1"
                     /translation="REQGFTIIHTREGHRPDLSDLPANKRWRSRRAGTEGVGIGDDGP
                     CGRILVRGEPGWEIIDELAPLPGEIVIDKPGKGSFCATDLELILRTRGIVNLVLTGIT
                     TDVCVHTTMREANDRGFECTVLADCCGATDPGNHQAALHMITMQGGVFGAVSDSNSLL
                     TTLGG"
BASE COUNT          429 a          830 c          716 g          439 t
ORIGIN      
        1 ttgggcgcgc cgcgaaggcg cttggccggt ggacagtccg acagatccgc tgcatgcgat
       61 tcgcgtgtat ggatcacaaa ccacccgctt tcccgcgcca gtgcgagcag cgcggaaaca
      121 gtcggcacga tctgcgcaag cagcgacaca tcgttgccca gtgattcacc aaagccaccg
      181 ggctcgatga agtcccgctg catgtcgatg atgacgagcg ccgtggtcga tggatcgaag
      241 gtaaagggac ccggtaacgc tggaatcgtg atcgtcatag cagttccccg tagcggttca
      301 ttctcatacg atgacctcct tcgccgcctc ggcagccgga acagcttgcg ccgtcgagtc
      361 accgtgtccc gccatgtagt ggcccaacgt cgcgcgctcc gcgctcgcgg cgggcgtctc
      421 gtacacgagc tccccttccg cgatcacgac aatgcggtcc gccagttcca gcaattcgtc
      481 gagatcttcg ctcacgagca ggactgccgc gccggcatcg cgcgccgcca tgatgcgtgc
      541 atgaatatcc gccaccgatg cgaagtcgag accgaacacc gggttcgcca cgatcagcac
      601 atcgaccggc tggcccagct cacgagcaag cactgcgcgt tggacattgc cgcccgacag
      661 cgtgccgatg gcacgttcgg gcaacggcgg acggacgttg aagtcgtcga tgagatgcgc
      721 ggcgcggtcc cgcatcgcac gccggtcgag acgccagccg ccgcgacgca atggcgtgcg
      781 gtcgaagtcg cgaagagcca ggttttgcgc gacgctcatg ctcgccacgc aggcgttttt
      841 aagcggctcc tcagggatgg caaatacacg ccgctgcgtc atttcctcgc gcgtggcgtg
      901 gtacgcatca ccggctatct ccatctcacc catcttcaag cggcgttgcc cgaccagcgc
      961 ctcgaccagc tctttctgac catttcccga tacccctgcg atcccgagta tttcacccga
     1021 tcgaaccgca agcgacgcgc gcttgaccgc cgcgtggccg cgatcatcgt cgatagatat
     1081 attcctcatg gcaaggcgta tccgcgcggc ggggtccacc ggtttgcgcg cgacccgctc
     1141 ggcattgacc gcgtccatga ccgcggtatc gcgcgtctcg gcggcgccca tcatcaaccc
     1201 ggcgagcgcg tcgcggctgg tcgccgatac agcgctcgtc cccacctgcc tgcccttgcg
     1261 cagcacggtc acgtcgtcgg catacgccat cacttcgcgg aacttgtgcg tgatcattaa
     1321 cacggtcaac tcgccgcgtg tcgtcaggtc gcgcatcaac cccagcacct cgtccgcctc
     1381 ttgcggcgtc agcacggaag tcggttcatc gagaatcagg aaacgctgcc tcagatacaa
     1441 ctgcttgaga atttcaagct tctgcttttc cccagcggcc aagccggata ccggcgcgtt
     1501 gagcggcagg cgaaacggca tgcgccgcat gaacgcatcg agtgcttcgc gttccgcggt
     1561 ccagtctatt ttccacggca ggctcccgcg tgcgagcagc aggttctcct ccaccgacaa
     1621 ccccgacgcc agcgtgaaat gctgatacac catgccgata cccagcgctt gcgcatcgcg
     1681 cggcgaagca atgcggacct cacggccatc ggctgagatc tggccttcgt cgagcaggcc
     1741 gtaacctacc agccccttca cgagggtact tttgcccgcg ccgttttccc cgagcaacgc
     1801 gtgaaccgtg cccggccgga ccttgatgga cacgttatcc agcgcacgaa atgcaccgaa
     1861 cgacttgccg gcgttgtgca cttccacctc taacgcatgc gaaggagtcg acatgatcag
     1921 ccgccgagtg tggtcaggag cgagttcgag tcggacaccg cgccgaacac gccgccttgc
     1981 atcgtgatca tgtgcagcgc tgcctgatgg ttgccggggt cggtcgcacc gcagcagtcc
     2041 gcgaggacgg tgcattcgaa tccgcggtcg ttggcttcgc gcatggtggt gtgcacgcag
     2101 acgtccgtgg tgatcccggt cagcacgagg ttcacgatgc cccgtgtgcg caggatcagc
     2161 tcgagatcgg tcgcgcagaa cgagcccttg ccgggtttgt cgatcacgat ttcacccggc
     2221 agcggcgcca gttcatcgat gatttcccag cccggctcgc cacgtacgag gatgcgcccg
     2281 cacggaccgt cgtcgccgat gcccacgcct tccgtccccg cacggcggct gcgccagcgc
     2341 ttgttcgccg gcaggtccga caaatccggc cgatgccctt cgcgcgtatg aatgatcgtg
     2401 aagccctgct cgcg
//
LOCUS       DATGBK010000547         3921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_238149, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000547 DATGBK010000000
VERSION     DATGBK010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3921
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238149"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VKJ77_07860"
     CDS             complement(<1..302)
                     /locus_tag="VKJ77_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008333682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45221.1"
                     /translation="MLSYLLRRALYALPIMLGVAFLCFMLVHIAPGDPLVSILPPDAS
                     ADLQKQLMELYGFNRPLPVQFFSWVWRALHGDLGTSIATGRPVAGEVIKAVGNTMM"
     gene            complement(363..2018)
                     /locus_tag="VKJ77_07865"
     CDS             complement(363..2018)
                     /locus_tag="VKJ77_07865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017455588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC45222.1"
                     /translation="MNFIKSSLLTWACALACSAVLPAAAQAQEKVLRIAMTAGDIPRT
                     LGQPDQGYEGNRFTGITLYDGLTQWDLSHEKGPSELIPDLATSWQVDPKDHTKWIFKL
                     RPGVKFHDGSPFNADAVVWNVDKVLNKSAPNFDPSQVGVTASRMPTLRSARKIDDLTV
                     ELTTSEPDSFLPINLTNLYMASPVQWQKKLAAIPASVTDPVERDKQAWIAFAADASGT
                     GPFKMARFVPRERLEMVKNSEYWDPARRPKIDRVVLLPLPEANTRTAALLSGQVDWIE
                     APAPDSMDAIKSRGFKIYSNPQPHVWPWQLSFLPGSPWLDKRVRYAANLCVNRTALKQ
                     LLGGMMSEATGTFEPGDPWRGNPTFQIKYDPDAARKLMTEAGYSAAKPLKVKVQISAS
                     GSGQMQPLPMNEFVQQNLKACFIDVSFDVVEWNTLYTNWRLGAKDPSAHGANATNVSF
                     ASMDPFFAMVRFVSTQAFPPVSNNWGYYSNPKIDALIQQARTTFDAKQRDVLLAQLHG
                     DIVDDAPFIWIAHDTGPRAISAKVHGVVQPKSWFIDIATMSMN"
     gene            complement(2109..2768)
                     /locus_tag="VKJ77_07870"
     CDS             complement(2109..2768)
                     /locus_tag="VKJ77_07870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007881293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HMC45223.1"
                     /translation="MSMSNFVAQTLQQRILSGAYAPGEVLPGQRALAGQLGVSRGALR
                     EAVSVLMTLGFLRSIPGKGTFVAHRGQPDTEPVSRSAEQTMQLRYIIEPSAAALAART
                     TGPGVASQFRDMQARFKNALLRNDLIDAANCDLAFHQAITACSGNDILAEISHSFEDR
                     IGKSQRFPLANTPRLIEAFEEHEHIVAAITSGNATAAMAAMQRHLRGAAARAGIAFTI
                     P"
     gene            complement(2954..3838)
                     /locus_tag="VKJ77_07875"
     CDS             complement(2954..3838)
                     /locus_tag="VKJ77_07875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013691193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45224.1"
                     /translation="MKKMDLNERDLRSLRVFCAAAQASGFAAAERALSMSKASISRHI
                     NEVEARLGVKLCERGPGGFQLTEGGEVALRVALQALEALERIKPEVDAVRGILSGPLL
                     LGTSEHVMTHEGCRIPEALGELHRIAPLVRPTLSVMTFSDLGAALAERRVQIAIRGAY
                     KRIRAFRHYPLFTETHRVFYRPAAAGEIHAHDNTRALPLVYRPHPFVEDALATQGFVQ
                     GLEVSGLEAVAMMIATGRYVGLLPEHYAAQLSPRYEFAVLPESPFYSMPFCAIVEEVR
                     PLTRAAEAFLNLLLEAHR"
BASE COUNT          770 a         1132 c         1228 g          791 t
ORIGIN      
        1 atcatcatcg tattgccgac cgccttgatc acttcgccgg cgaccgggcg gccagtggcg
       61 atcgaggtgc cgaggtcacc atgcagcgcg cgccagaccc agctaaagaa ctgcaccggc
      121 aacggacggt tgaagccgta gagttccatc aattgcttct gcaggtcagc cgatgcgtcg
      181 ggcggcaaga tggagaccaa cgggtcgccc ggcgcgatgt gaaccagcat gaaacagagg
      241 aacgcaacac ccagcatgat cggcaacgca tagagcgcgc gccgtagaag ataggaaagc
      301 atgaggtggg gcccggttgc tgcggcttag gcgtagcgtg cccaagccgc ggcgggttca
      361 ggtcagttca tcgacatggt ggcgatgtcg atgaaccagc tcttcggttg caccacgccg
      421 tgcactttgg ccgagatcgc gcgggggcct gtgtcgtgcg cgatccagat gaacggcgcg
      481 tcatcgacaa tatcgccgtg caactgtgcg agcagcacgt cgcgctgttt cgcgtcgaat
      541 gtcgtgcgag cttgctggat caacgcatcg atcttcgggt tgctgtagta gccccagtta
      601 ttcgataccg gcgggaaggc ctgcgtgctg acgaaacgga ccatggcgaa gaacgggtcc
      661 attgatgcga agctcacgtt ggttgcatta gcgccgtgtg ccgaggggtc cttcgcaccg
      721 aggcgccagt tggtgtagag cgtgttccac tcgaccacat caaagctgac gtcgatgaaa
      781 caagccttca ggttctgctg cacgaattcg ttcatgggca gcggctgcat ctgaccagac
      841 cccgaagccg aaatctgcac cttgaccttc agcggcttcg ctgccgaata accggcttcg
      901 gtcatcagct tgcgggctgc gtccgggtcg tacttgatct ggaaggtcgg gttgccgcgc
      961 cacgggtcgc ccggctcgaa ggtgccggtc gcctcgctca tcatcccgcc caacaactgc
     1021 ttgagcgccg tgcggttcac acagaggttg gccgcgtatc gcacgcgttt gtcgagccac
     1081 ggtgaacccg gcaggaacga gagctgccac ggccatacgt ggggctgagg gtttgaataa
     1141 atcttgaagc cgcgcgactt gatcgcgtcc atggaatccg gcgcgggcgc ctcgatccag
     1201 tcaacttgcc ctgacagcag ggccgctgtg cgcgtattgg cttcgggcag cggcagcagt
     1261 accacgcgat caatcttcgg cctgcgcgct gggtcccagt actcggagtt cttgaccatc
     1321 tccaggcgtt ctcgcggcac gaagcgcgcc atcttgaacg gacctgtacc cgaagcgtcg
     1381 gcggcgaacg cgatccacgc ttgcttgtcg cgttcgacgg gatcggtcac tgacgcggga
     1441 atcgcggcga gttttttctg ccactgtacg ggcgaggcca tatacaggtt tgtcaggttg
     1501 atcggcagga acgagtcggg ttcagaagtc gtcagttcga ccgtcaggtc gtcgatcttg
     1561 cgtgctgagc gcagcgtggg catgcgtgat gcggtcacgc cgacctggct tgggtcgaag
     1621 ttcggcgcgc tcttgttgag gaccttgtcg acgttccaga caactgcgtc ggcgttgaag
     1681 ggcgagccgt cgtggaactt cacgccgggg cgtagtttga agatccactt ggtgtgatcc
     1741 ttggggtcca cttgccagga cgtggcgagg tcggggatca gttcgctggg gcccttctcg
     1801 tggctcaggt cccattgcgt gaggccgtcg tacagggtga tgcctgtgaa gcgatttccc
     1861 tcataaccct ggtccggttg acccagcgtg cgagggatat cgcctgctgt cattgcgatc
     1921 ctcagcactt tttcctgtgc ttgtgcggcg gcaggcaaga ccgcgctgca tgccagcgcg
     1981 caggcccacg tcagcaaact tgatttgatg aagttcatgc aggtacggtc ccttatggtg
     2041 gttgatcttc gatggatggt gaggagggcg tccaggaaca gcacgccttc agttagtcat
     2101 actgatattt acggaatggt gaacgcgatg ccggcgcgtg cggcggcgcc tcgcagatgg
     2161 cgttgcatgg cggccattgc tgcggtggcg ttgccgctgg taatcgctgc aacaatgtgt
     2221 tcgtgttcct cgaacgcctc gatcaggcgc ggcgtattgg cgaggggaaa gcgttgactt
     2281 ttaccaatgc ggtcttcgaa cgagtgggag atttccgcga gaatgtcatt gccggagcat
     2341 gcagtaattg cttgatggaa agcgaggtcg cagttggcgg cgtcgatgag gtcgttgcgc
     2401 agcagggcat ttttgaagcg cgcttgcatg tcgcggaact ggctcgccac gcctgggccg
     2461 gttgttcgtg cggcgagtgc ggcggcggag ggctcgatga tgtagcgcag ttgcatggtt
     2521 tgctcggcac tacggctgac gggctccgta tcgggttgtc cgcgatgcgc aacgaacgtg
     2581 cctttaccgg ggatagaacg aaggaagcct agggtcatga gtaccgacac ggcttcgcgc
     2641 agggccccgc ggctaacgcc gagttgacct gctagtgcgc gctgcccggg caggacttca
     2701 ccgggcgcgt atgcgcctga aagaatgcgt tgctggaggg tttgcgcaac gaaattcgac
     2761 atgctcatgc agtgcactcc taccggtagg accggagtgc ttatgcgtga accgtgccag
     2821 gggagtgttg gcttttaaaa caatggcttg gcatagtgaa cggaatttga gaaatagcgt
     2881 atgcactagt tcctagcgat cgattcggtg catcgcacga aatcagggca gaagaaaggt
     2941 ggccttgcgc gtctcaccga tgcgcctcca acaacaaatt caaaaatgcc tccgcagccc
     3001 gcgtcaaggg ccgcacttcc tcgacgatgg cgcaaaacgg catcgagtag aagggcgact
     3061 ccggcaacac cgcaaactca taccgcggag aaagctgcgc agcgtagtgc tcgggcagca
     3121 gtccaacgta acgccctgta gcgatcatca tcgcgacggc ttcgagcccg ctgacctcca
     3181 gcccctgcac aaacccttgc gtggcaagcg catcctcaac aaacggatgg ggccgataaa
     3241 ccagtggtaa cgcccgcgta ttgtcatgcg cgtgaatctc gcccgcagcc gccggccgat
     3301 aaaacacccg atgtgtttca gtgaaaagcg gatagtgccg gaacgcccgg atacgcttat
     3361 aagcgccgcg aatggcaatt tgcacccggc gttcggccag cgcggcgccg agatcgctaa
     3421 aggtcatgac ggacaacgtc ggcctcacaa gcggcgctat ccgatgcaat tcacccagcg
     3481 cctcgggaat cctgcacccc tcatgcgtca tcacatgctc ggacgttccg agcaaaagcg
     3541 gcccggacaa aatcccgcgc acggcatcga cttcaggctt gatccgctcc agcgcttcga
     3601 gtgcctgcaa tgccacgcgt aatgcaactt ctccgccctc agtgagctga aacccgcccg
     3661 ggccgcgctc gcaaagcttg acgccaagcc gcgcctccac ctcattgata tgccggctga
     3721 tcgacgcctt ggacattgac aatgcacgct ccgccgccgc gaagccgctc gcctgggcgg
     3781 ccgcgcaaaa cacgcgcagc gagcgaaggt cacgctcgtt caagtccatt ttcttcatcg
     3841 atgcgtgctt taagaggttt cggtttccgg aaccatatca acgaaaaaat ggtttttcaa
     3901 aacttttttg actgcctaca t
//
LOCUS       DATGBK010000548         2128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_30233, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000548 DATGBK010000000
VERSION     DATGBK010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30233"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..360
                     /locus_tag="VKJ77_07880"
     CDS             <1..360
                     /locus_tag="VKJ77_07880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HMC45225.1"
                     /translation="QMCNEWGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWI
                     WQDGQRLTREPLQIVGGKVKVPARPGLGVDIDMDELEKAHALYREHGLGARDDAIAMQ
                     YLIPNWTFDNKRPCLVR"
     gene            414..1331
                     /gene="kdgD"
                     /locus_tag="VKJ77_07885"
     CDS             414..1331
                     /gene="kdgD"
                     /locus_tag="VKJ77_07885"
                     /EC_number="4.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010094246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047448 - 5-dehydro-4-deoxyglucarate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxyglucarate dehydratase"
                     /protein_id="HMC45226.1"
                     /translation="MTTPQELKQIVSEGLLSFPLTDFDEQGDFRADTYAERLEWLAPY
                     GATALFAAGGTGEFFSLTQSEYSNVIRTATETCKGKVPILAGAGGATRVAIAYAQEAE
                     RLGANGILLMPHYLTEASQEGIAAHVEQVCKAVKNIGVIVYNRANSKLNADMLERLAD
                     TCPNLIGFKDGVGEIENMVTIRRRLGDRFSYLGGLPTAEVYAEAYKALGVPVYSSAVF
                     NFIPKTAMEFYRAVASQDHATTGRLLDEFFMPYLAIRNRKAGYAVSIVKAGAKLIGRS
                     AGPVRAPLTDLTEDEMAQLDVLIKKLGAQ"
     gene            complement(1489..2073)
                     /locus_tag="VKJ77_07890"
     CDS             complement(1489..2073)
                     /locus_tag="VKJ77_07890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LUD domain-containing protein"
                     /protein_id="HMC45227.1"
                     /translation="MTTRDTFLAKIRAAQPAARLRPDVPLFDTPPGERLERFRTALAA
                     MGGTVVEGESLDTVRALLSERFGPDAIVASAVPGIEGNRVLAADMSPALLQDVDSGVV
                     RARFGVAETGSVWFSEDEYIVNSIGYLVQHLVVLLDPAQIVDGLQDVYRRDDFKAARY
                     AVLVTGPSATADIEGVLIRGAQGVRSLTVVLLAA"
BASE COUNT          445 a          636 c          645 g          402 t
ORIGIN      
        1 caaatgtgca acgagtgggg cctgacgtgg gggtcgcatt cgaacaacca cttcgacatt
       61 tctcttgcca tgttcacgca cgtcgcggcg gcggcgcccg gcaagattac tgccatcgat
      121 acccactgga tctggcagga cggccagcgt ctgacgcgcg agccgctgca gatcgtgggc
      181 ggcaaggtga aggtgccggc gcggccggga ctgggcgtgg atatcgatat ggatgaactc
      241 gagaaagccc acgcgctgta tcgggaacac ggtctcggcg cccgcgacga cgccatcgcg
      301 atgcagtacc tgattccgaa ctggaccttc gacaacaagc gcccgtgcct cgtgcgctga
      361 tttcctcaac gaatgattca acgacttacc ctaaaaccaa ttcacgaccg accatgacga
      421 cacctcaaga gctcaagcaa atcgtttccg aagggctgct gtcctttccg ctgaccgact
      481 tcgacgaaca aggcgacttc cgcgccgaca cctacgccga acgtctggag tggcttgcgc
      541 cctatggcgc gacggcgttg ttcgcggccg gcggcacagg cgaatttttc tcgctgacgc
      601 agagcgagta ttcgaacgtg attcgcacgg cgacggaaac ctgcaaaggc aaggtgccga
      661 tcctcgccgg tgcgggcggc gcgacacggg tcgctatagc atatgcacag gaagccgaac
      721 ggcttggcgc gaacggtatt ttgctgatgc cgcactacct gactgaagcc agccaggaag
      781 gcattgctgc gcacgtcgaa caggtgtgca aggcggtaaa aaatattggc gtgattgtgt
      841 ataaccgcgc caattcgaag ctcaacgccg acatgcttga acggcttgct gatacgtgcc
      901 cgaacctgat cggcttcaag gacggtgtag gcgagatcga aaacatggtg acgatccgtc
      961 gccggctggg cgaccggttt tcgtacctcg gcgggttgcc gacggccgag gtttatgccg
     1021 aagcgtataa ggcgctgggc gtgccggtgt attcatcggc ggtattcaac ttcattccga
     1081 aaaccgcgat ggagttttat cgtgcggtgg cctcgcagga tcacgcgacg actggccgcc
     1141 tgctcgatga gttcttcatg ccgtatctgg caattcgtaa ccgcaaggcg ggttatgcgg
     1201 tgagtatcgt gaaggcgggg gcgaagctga tcggccgcag cgccggtcct gtgcgcgcgc
     1261 cgctgaccga tctgaccgaa gacgaaatgg cacaactcga tgtgctgatc aagaagctcg
     1321 gcgctcagtg aaaccgctgg tcgagttagc ccaacggcta tggattgaag cccgttgttg
     1381 ggctgcgtcc tgatggagaa gcgcccgatg aacttcatcg ggcgtttctg ttttcaggga
     1441 tggacagttg cgaaaggacg atatcgatgt ccactcgcgg cacgccaatc aagccgcgag
     1501 caacaccacc gtcagcgacc gaacgccttg cgcaccgcga atcagcacgc cttcgatatc
     1561 cgccgtcgcc gatggccccg tcaccaggac ggcataacgc gcggccttga agtcatcgcg
     1621 tcgatacaca tcctgcagcc catccacaat ttgcgccgga tcgagcagca cgaccagatg
     1681 ctgcacgaga taaccgatcg aattgacgat gtattcgtcc tcgctgaacc acaccgagcc
     1741 ggtttcggcc acgccaaagc gcgcacgcac cacgcctgaa tcgacgtcct gcagtaatgc
     1801 aggcgacata tcggcggcga gcacacggtt cccttcgata cccggcacgg ccgacgcaac
     1861 tatcgcatct ggaccgaaac gctcgctgag cagcgcacgc accgtatcga gcgattcccc
     1921 ttcgaccacc gtcccgccca tcgctgccaa ggcggtacga aagcgttcga ggcgttcacc
     1981 gggcggggta tcgaagagcg gtacgtcggg acgcagcctt gcagccggtt gcgccgcgcg
     2041 gatcttggcg agaaaagtgt cacgcgtggt cattttttgg ctgccttgcg atttttcttg
     2101 taccactcgt ggaaggtttc agcgggcg
//
LOCUS       DATGBK010000549         1604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_192331, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000549 DATGBK010000000
VERSION     DATGBK010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192331"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..936)
                     /locus_tag="VKJ77_07895"
     CDS             complement(<1..936)
                     /locus_tag="VKJ77_07895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HMC45228.1"
                     /translation="MSDTIQSDRPAVDSNQAAKGALPQEAAPRTKRKLLLSLLGAAIV
                     ISAAAYGAYYYTDARFYQSTDDAYVSGNLVQLTPQVSGTVVAVNADDTQIVKAGDPVV
                     TLDSADAKVALGNAEATLGQTVREVSSLYVNNDFYAASIAQRESDLARANSDLQRRQA
                     VENTGAVSAEDVSHARDAVKSAQASLDAMRQQAEANHVLTDRTSIEQHPNVQAAASKL
                     RDAYLSYARNTLPAPVTGYVARRSVQVGQRVAPGTPLMAIVPLDGVWVDANFKEGQLR
                     HMRIGQPVTLTADVYGSSVKYHGRVVGFSAGTGSAF"
     gene            complement(972..>1604)
                     /locus_tag="VKJ77_07900"
     CDS             complement(972..>1604)
                     /locus_tag="VKJ77_07900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC45229.1"
                     /translation="LPDNLPADLVSRRPDLVAARWRVDALTHDVKEAKAEFYPDINLS
                     ASIGLDAFGFGRLLTAASRTATAGPAIHLPIFDAGALRAQLKGRYADFDYAVATYNQT
                     LVTALSDVATQLAQIRSTDAQLVDAETAQEAAHRADELAIVQYKGGLTNQLTVLNADG
                     NALSADQAVVDLKMNRRDQQIALAAALGGGYIDTSTDTATSSSSQTVAAR"
BASE COUNT          296 a          483 c          504 g          321 t
ORIGIN      
        1 gaaagcactg cccgtgccag cggaaaagcc caccacgcgg ccgtgatact tgacgctcga
       61 accatataca tcggccgtca acgtcaccgg ctgaccaatg cgcatgtgcc gcagttgccc
      121 ttccttgaag ttggcatcga cccacacacc atcgagcggc acgatcgcca tcagcggtgt
      181 acccggggcg acacgctgcc cgacctgcac agaacggcgc gcgacgtaac ccgtcaccgg
      241 cgcgggcaag gtgttacggg cataactcag gtaagcatcg cgaagcttgc tcgcagccgc
      301 ctgcacgttc gggtgttgtt caattgaagt gcggtcagtg agcacgtggt tcgcttcggc
      361 ttgctggcgc atggcgtcga gtgaagcttg tgcgcttttg acggcatcgc gggcatgcga
      421 cacgtcttcg gcggacaccg cccccgtgtt ctccacggcc tggcgacgtt gcagatcgga
      481 gttggcgcgg gcgagatccg actcgcgttg cgcgatgctc gccgcataaa agtcattgtt
      541 gacgtagagg ctgctcactt cccgcacggt ctgaccaagc gtggcttccg cattaccgag
      601 cgcaactttt gcatcagctg agtccagtgt cacgaccggg tcaccggcct tgacgatctg
      661 cgtatcgtcc gcgttcaccg cgacaaccgt gccgctgact tgcggcgtga gttgcacgag
      721 attgccactg acgtaggcgt catccgtcga ctggtagaag cgcgcgtcgg tgtagtaata
      781 cgcaccgtag gctgccgccg agatgacgat tgctgcgcca agcaaggaaa gcaacagctt
      841 gcgtttcgtg cgcggcgcgg cctcttgggg taaagcaccc ttggctgcct ggtttgaatc
      901 caccgccggg cggtcggact ggatggtatc gctcattgca aattctcctg acgggtccgt
      961 ggaatgccgg ctcagcgagc ggcaacagtt tgtgaagacg aagaggtggc agtgtccgtg
     1021 ctggtatcga tataaccgcc gccaagtgcc gcggcgagtg cgatctgctg gtcgcgacgg
     1081 ttcattttca gatcgacgac agcctggtcc gccgacaacg cgttcccgtc agcgttgagc
     1141 acagtcagtt gattcgtgag accgcccttg tactgcacga tcgctagttc atcggcgcga
     1201 tgcgcggctt cctgcgcggt ttctgcatcg acgagttgtg catccgtcga ccggatctgc
     1261 gcgagttgcg tcgcgacatc gcttagcgcg gtgacgaggg tctggttata ggtcgcaacc
     1321 gcataatcga aatcggcgta acggcctttg agttgagcgc gcaatgcgcc cgcatcgaag
     1381 atcggcaagt gaatcgccgg accggccgtt gcggttctgc tcgccgccgt cagcaagcgg
     1441 ccaaagccga atgcgtccag gccaatcgat gcgctcagat tgatgtccgg atagaactcg
     1501 gccttcgctt ccttcacatc atgtgtgagg gcatccacac gccagcgtgc cgcaaccagg
     1561 tcgggccggc ggctaacgag atcggccgga aggttgtcgg ggag
//
LOCUS       DATGBK010000550         3178 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_330789, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000550 DATGBK010000000
VERSION     DATGBK010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3178
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330789"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..473
                     /locus_tag="VKJ77_07905"
     CDS             231..473
                     /locus_tag="VKJ77_07905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45230.1"
                     /translation="MRCNIASTSGAALPPSGTSRNAKMAASISASTTAMRSGVNLPST
                     PTAPCTLYVAIRRPRVGTKRTPRWSSIQTSCIDVMG"
     gene            complement(636..1082)
                     /locus_tag="VKJ77_07910"
     CDS             complement(636..1082)
                     /locus_tag="VKJ77_07910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45231.1"
                     /translation="MTDNDPWPPSHTMDLENVDIAISLTEPVFSGRPGLQQIRQQYLD
                     AIALLKRSIYIENQYFTAGSIGGALRETLENPDGPDLAIAIAIAIAAQAERLAPENDN
                     GGAARTAARIAHASGCARPVSPDVAERAGVRNGLRERAQQIDAGRR"
     gene            1572..2171
                     /locus_tag="VKJ77_07915"
     CDS             1572..2171
                     /locus_tag="VKJ77_07915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HMC45232.1"
                     /translation="MTALPAAVLFALVTTITPGPNNTMLLASGVNFGLRRTVPHVLGI
                     SVGVAILMVLVGLGVGQAFARFAWAYTLLEALSVAYLLYLAWKIATSSTMQVRDGERR
                     PMRFIEAAAFQWINPKAWMMVLTAATTIHLHSSFSLNAVLMAVVFIVVGLPCITMWAA
                     FGTSMRRLLTQPRWLRAFNWTMATLLVLSLYPIVERALA"
     gene            2471..2635
                     /locus_tag="VKJ77_07920"
     CDS             2471..2635
                     /locus_tag="VKJ77_07920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45233.1"
                     /translation="MSGANRPSGPATRKSLDLADQIERDELENQLPDALNHADDDDLD
                     DEPDTGKPRR"
     gene            2895..3056
                     /locus_tag="VKJ77_07925"
     CDS             2895..3056
                     /locus_tag="VKJ77_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012735230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 family protein"
                     /protein_id="HMC45234.1"
                     /translation="MLRYAVIFFIIAIIAAFFGFGGIASGATEIAKILFFIFIVIFLA
                     TLLLGVFRR"
BASE COUNT          628 a          969 c          902 g          679 t
ORIGIN      
        1 tcgacccgtg gccgtccttc acgcgatccg agccacagat gcgttgcgac aacacgccac
       61 gtctcatcgt cgcaatcgat gttcggattc agcgtgccgc tcggttcaaa gctcctgaac
      121 gacaagtcga gcgtacggac cgcacgcacc ggaaagcgcg tcggcaccgt acgctgtagc
      181 gtcgcgcagg ggtatcgagc gtgggaccgg cgaccgcatg gaggccagtc atgcgctgta
      241 atatcgccag cacgtcgggc gcggcgttgc ctccgagcgg tacctcccgc aacgcgaaga
      301 tggcggcatc gatctctgcg agcaccaccg caatgcgctc gggcgtgaac ttgccgtcca
      361 cccccaccgc gccgtgcacg ttatacgtcg ctatccgcag gcctcgcgtg ggcaccaagc
      421 gcacgccgcg atggtcgtca atacagacct cgtgcatcga tgtcatgggc tgacctcacc
      481 cgcctgccgg gaagcgttcg gcgcttcccc ctcgacatta gtcacgcgtt catgcaacga
      541 cggaggctcg cgcttgcgtt gccgttcgcc ctcggccgcg ggttgctttc gtcatcgaac
      601 gaatgttgag attcgccaat tcgacccgca gcaggtcatc gtcgaccagc gtcaatttgc
      661 tgtgcacgtt cacgcaagcc gtttcgaact ccggcacgct cggcgacatc aggcgatacg
      721 ggtcgtgcac atccgcttgc gtgagcaatc cgtgcagccg tacgcgcagc acccccattg
      781 tcattttctg gagccagccg ctctgcttgc gcggcgatgg cgatggcgat ggcgatggcg
      841 agatcgggac catcgggatt ctccagcgtc tcgcgcaacg caccaccgat cgaacccgcc
      901 gtgaaatact ggttctcgat atagatgctg cgctttaaga gagcgatggc atcgagatat
      961 tgctggcgga tttgctgaag accgggtcga ccagagaaga ccggttcagt cagcgatatc
     1021 gcgatatcaa cgttctccaa atccatcgtg tgcgatggtg gccacggatc gttgtcggtc
     1081 atcgcgcgat gcgagcggaa acgcgaagcg ccgctcatgc ggctgttgat atcccagcca
     1141 aggatgaaca tcgtgcactg cgctcgcgcg atcgcctcgc gaaggacacg gaaataatcc
     1201 gcgccgtcga tcagcaaact aaaacgatca gcatgccgaa cgctatcgca attgcggccc
     1261 agttgaaaaa acgcttcggt gctcatgcgg ctagcgcgtc cgaatggatt cttgaacaga
     1321 ttcgccggac gcgaaaaccg cggaacgtgg gatagatcgt gcagatgaag taaggcttca
     1381 tgtgacgttt tttgcaaacg ccaagccaga ttgcgcgctg cgcaaaaacc tgccgcaccg
     1441 tacaggaaat gattcgacca tctgtaccgg tactgtacag atcacatctc atacactgac
     1501 gacaacggac tcccgatccg attgagctcc tgccttagga aaacaccatg catctcgaca
     1561 ccaccgcctt aatgactgcc ctcccggccg cggtgctgtt cgcgctcgtc accaccatca
     1621 cgcccggtcc gaacaacacc atgttgctcg cctcaggggt gaacttcggg ttgcgccgca
     1681 cggtgccgca cgtgctcggt atcagcgtgg gcgtagctat cctgatggtg ctggtcggtc
     1741 tcggcgtagg gcaggcattt gcgcgtttcg cctgggctta cacgctgctt gaagccttaa
     1801 gcgtggcgta cctgctgtat ctcgcgtgga agatcgcgac ctcgtcaacc atgcaggttc
     1861 gcgacggcga gcgtcggccc atgcggttta tcgaagccgc cgcgtttcaa tggattaacc
     1921 ccaaggcatg gatgatggtg ctgacagccg cgaccactat ccatttgcat tcgagctttt
     1981 ccctgaatgc cgtcttgatg gcagtggttt tcatcgtcgt cggattaccg tgcatcacga
     2041 tgtgggccgc gttcggcacg tcgatgcggc ggctcctcac gcaaccgcgc tggctgcgtg
     2101 ctttcaactg gacaatggcc acgctgctcg tgttgtcttt gtatccgatc gtcgagcgtg
     2161 cgttggcgtg atgacttaat gatgggcgtg gcgtgacagc gtaatcagtg ctgccgtcgt
     2221 tacattggcg gcgtgctgat ttgcaggttc gggcttcaga tccagcctat tttttcgtag
     2281 gcggcgcata ctggtctatg cctgccgtcg cgcaaaatat gcagcctgat tgcaactttg
     2341 tccgtaaaaa gcggcaagaa atgcgcacac tccgttatcc cgggggatcg acaggcatgt
     2401 acgaagcttg ctgcccgatc aactcgcgcc cctgttggcg cggcattgaa atctcccaag
     2461 gagttacgcc atgtctggag caaaccgccc gtccggtccc gcaacacgca agtccctcga
     2521 tctcgccgac caaattgaac gcgatgaact cgagaaccaa ctgccggatg cgctaaacca
     2581 cgccgacgat gacgacctcg acgacgaacc cgacaccggc aagccccgcc gataacattt
     2641 ctcctccatt cccgcgcctg ttggcgcgta ctcaaggccg cacttgcgca acgcagtgcg
     2701 gcttttttgt gcgtggattt ttttgacccc tatttccggt ggtggagcgc ctgggcacgg
     2761 cggttgctct aagttcgggc gccgcgggat tacagctgca ttcggcggca catgcacatg
     2821 caaagcagtc aaggcggcga aggcgtcaag ccagcacgca aaccaatccg ataatcgacc
     2881 ctttggaggg cttcatgctt cgatacgctg tcatcttttt catcatcgcg atcatcgcgg
     2941 cattttttgg cttcggcggt atcgcgagtg gtgcaaccga aattgcgaag atcctgttct
     3001 tcatcttcat cgtgatcttt ctggcaacgt tgttgctcgg cgtgttccgg cgatgaaacg
     3061 ccggtgctcc tgatcagggg acaccctcgc attgaagcgg aagcagatgc aaaaaagcgc
     3121 gagcatgctc gcgctttttt catgctttcg gcttaccccg cttaccgcat aacgcagt
//
LOCUS       DATGBK010000551         1849 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_168995, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000551 DATGBK010000000
VERSION     DATGBK010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168995"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            194..>1849
                     /gene="glnE"
                     /locus_tag="VKJ77_07930"
     CDS             194..>1849
                     /gene="glnE"
                     /locus_tag="VKJ77_07930"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008882 - [glutamate-ammonia-ligase]
                     adenylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HMC45235.1"
                     /translation="MTDAVLLSASASNYATRVYAARPELPALVAEWSQAPIRRAWIEA
                     RLNALCDACSARSASGRLDEAALKTALRRLRIEVFCTVMERDLAGLAHVAEVTGAMTD
                     LAELTIQRALAVLSADLEVAFGEPRGPDGQRLTLGVVGMGKLGGRELNVSSDIDLIFV
                     YEEDGETAGGERAALSTQEYFTRLGRKLIGALAEVTEDGYVFRVDMRLRPNGDAGPIA
                     CGLGMLEEYFYVQGREWERYAWIKGRLVSEAESEPAQRLSKLLDALAKPFIYRRYLDY
                     GVISAIRALHVQIRQEAQRRASMRPDKADDIKLGRGGIREIEFSAQVFQLIRGGQIAD
                     LRIRPTLSVLNRAAAHGLISAKVCSELTDAYLFLRKLEHRLQYRNDAQTHAMPVAPDD
                     RAVLADVMGFADYPALTDALEAHRARVEHQFDQIFADKVKGDGGCAVAEDSAASWVWS
                     SALADDSAEEQLVERMTELGFTDATAVLTRLRNVWKSTRYEGLPERSRERFDIVAQRA
                     LEAAKAVEPPERRGDTIARLFDLLEAVSRRGAYLALLTEYPAAL"
BASE COUNT          334 a          541 c          633 g          341 t
ORIGIN      
        1 ggcgatatgg taggttttcg agatttgacg ttgaaatgta acacagcgcg cactgcaaaa
       61 aactgcggga acacgctacg atgcggccgc gaagccaagc cggacggcgt tctgcacacc
      121 gcgcgccaat gtgcgcaaaa gccccggcgc actgccggac ttgtttgtga gcaatgactg
      181 agcccgacct ttcatgaccg acgccgtttt gctgagtgcc agcgcttcca actacgccac
      241 gcgcgtgtat gccgcgcgtc ccgaattgcc ggcgcttgtg gccgaatggt cacaagcgcc
      301 gatccgccgc gcctggatag aagcgcggct gaacgccctg tgcgacgcgt gttcggcgcg
      361 ttcggccagc ggccggcttg atgaggccgc gctcaagacc gcgctcagac gtttgcgcat
      421 cgaggtcttc tgcacggtga tggaacgcga tctcgcgggc ctcgcgcatg ttgccgaagt
      481 cacgggcgcc atgacggatc ttgccgagct gaccatccag cgcgcgctcg cggtgttatc
      541 ggcggatctg gaagtcgcgt tcggcgagcc acgcgggcca gacggacagc gcttgacgct
      601 gggtgtggtg ggaatgggga agctcggtgg acgtgagttg aacgtgtcgt cggatattga
      661 tctgatcttc gtctatgaag aagacggtga gacggcaggc ggcgaacgcg cggcgttatc
      721 gacgcaggaa tattttacgc ggctcggccg caagctgata ggcgcattgg ccgaggtgac
      781 ggaagacggt tatgtcttta gagtcgatat gcggttgcgg ccgaacggcg atgccggtcc
      841 gatcgcttgc gggctcggca tgctcgaaga gtatttctac gtgcagggcc gcgagtggga
      901 acggtacgcg tggatcaagg ggcggctggt ctccgaggcc gaaagcgaac cggcgcaacg
      961 gctgtcaaag ttgctcgacg cgctcgccaa gccgtttatc taccggcggt atctcgacta
     1021 cggcgtgatc agcgcgattc gtgcgctgca tgtgcagatc aggcaggaag cgcagcggcg
     1081 cgcgtcgatg cgtcccgaca aagccgacga catcaagctc ggccgcggcg gtattcggga
     1141 gatcgagttc agcgcgcagg tgtttcaact gatccgtggc ggccagattg ccgatttgcg
     1201 gattcgtccg accttgtccg tgctgaatcg cgcggcggcg cacgggttga tatcggcgaa
     1261 ggtatgtagc gaactcaccg acgcgtactt gttcctgcgc aagctcgagc accgcttgca
     1321 gtatcgaaac gatgcgcaga cgcacgccat gccggtcgcg ccggatgacc gcgcggtgct
     1381 cgccgacgta atgggtttcg ccgattaccc ggccctcacg gatgcgctgg aggctcaccg
     1441 ggcgcgcgtg gagcatcagt tcgaccagat tttcgccgat aaggtgaagg gcgacggcgg
     1501 ttgcgcggtc gcggaagatt cggcggcgtc ttgggtctgg agcagcgcgc ttgccgacga
     1561 cagcgccgaa gaacagttgg tcgagcgcat gaccgaattg ggtttcaccg acgccaccgc
     1621 tgtgctcacg cgtctgcgca atgtatggaa atcgacgcga tacgaaggtc tgcccgagcg
     1681 cagccgggag cggttcgaca tcgtcgccca acgtgcgctc gaggccgcga aggctgtcga
     1741 accgcccgag cggcgcggcg acaccattgc ccggctgttc gacctgctcg aagcggtcag
     1801 ccgccgtggc gcttatctcg cgttgctcac cgaatatccg gcggcgctc
//
LOCUS       DATGBK010000552         3270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_215163, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000552 DATGBK010000000
VERSION     DATGBK010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3270
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215163"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /locus_tag="VKJ77_07935"
     CDS             complement(<1..466)
                     /locus_tag="VKJ77_07935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006387058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45236.1"
                     /translation="MSQVNTRALVELRGVSQRFGERDENAATRWLRERNVLAAQAVTR
                     AVEHVDLAITPGEVVGLVGESGCGKSTLGRIVSGLIAPTEGDVLVDGQDRAAMSPAAL
                     RAARLAIQMIFQDPYSSLNPRRRIRDIVGEAPLVHGMVERSDLDAYVAAQLKR"
     gene            complement(463..1509)
                     /locus_tag="VKJ77_07940"
     CDS             complement(463..1509)
                     /locus_tag="VKJ77_07940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016727005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45237.1"
                     /translation="MSNAALHDFHTADNTLEVRHLRTRFFTREGELPAVEDVSLTLAR
                     GRVLGLVGESGSGKSVTGFSIMGLIDAPGRVVGGEILFKGKNIVGLPEAEMRRLRGSR
                     IAMVFQDPMSTLNPVQRVDAQMIEAVRAHRDVSRSAAREQASEALAAMGIASPDERLR
                     AYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQTLVRTQGTS
                     LIWITHDLSVVAGLADDIAVMYAGKIVEQGTVDAVLDRPQHPYTAGLIDSLPSLNTRG
                     KKLTQIAGITPDLRSLPPGCAFAARCTRATSVCSTPPPLGPSPAAQASEHGTHLVRCF
                     HPGRQTDVRTETTA"
     gene            complement(1506..2441)
                     /locus_tag="VKJ77_07945"
     CDS             complement(1506..2441)
                     /locus_tag="VKJ77_07945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012353975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45238.1"
                     /translation="MSTTPLVPETKTPVRGALKPRRSPWRQLVADFGRSPAAMAALIV
                     AILLVLAAIFAPLITPQNPYDLLQLDVLDARLPPGSMNGAGTHAYWLGTDGQGRDLYS
                     AMLYGLRLSLSVGLGSAVIAGVVGTVFGLVAAYAGGKVDSLIMRLVDLLLAFPSILVA
                     MMLLAFLGKSVTNVVLTLVLIEWAYYARTARAQALVEARREYVEAARSLAIPNWRIVL
                     VHILPNCLPPLIVVGTLQVARAITLEATLSFLGLGVPITEPSLGLLIANGYQTMLSGE
                     YWTSVYPGLALLAMLVSINMVGDRLRELLNPRFVK"
     gene            complement(2438..>3270)
                     /locus_tag="VKJ77_07950"
     CDS             complement(2438..>3270)
                     /locus_tag="VKJ77_07950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005014392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45239.1"
                     /translation="RIIAQLGLDQPLWKQYLAFLAGAMHGDLGNSFVYNEPAMRLILQ
                     RLPATLELAVSALLLALAIGIPLGLFAGLHPRNPLSKMLMTGSIVGFSLPTFWVGLML
                     IMLFSVKLGWLPASGRGATAGLFGVQWSWLTLDGLRHLVLPALNLSLFKVSLVLRLTS
                     AGVREVMPMEHVRFARAKGLSPTRVVLVHILRNTLIPLVTVIGLEFGSTIAFAVVTET
                     VFSWPGAGKLILDSINALDRPVILSYLIVVVCMFVSLNLFVDILYKFLDPRVRLEGAR
                     "
BASE COUNT          671 a         1018 c         1046 g          535 t
ORIGIN      
        1 cgcgctttaa ctgcgccgcc acgtaggcgt cgagatcgct gcgctcgacc atgccatgaa
       61 cgagcggtgc ttcgccgacg atatcgcgaa tacggcgtct aggattgagg ctcgaatacg
      121 gatcctggaa aatcatctgg atcgccagcc gcgcggcgcg cagcgcggcc ggtgacatgg
      181 ccgcgcggtc ctggccatcc accagcacgt cgccttcagt cggcgcgatg aggccggaaa
      241 caatgcggcc gagcgtggac tttccgcagc cggattcgcc gaccagcccg accacttcgc
      301 ccggcgtgat cgcaagatcc acatgttcga ctgcacgtgt gaccgcttgc gccgcgagca
      361 cgttgcgctc acgtaaccac cgtgttgcgg cattctcgtc gcgttcgccg aagcgctggc
      421 tgaccccgcg caattcaacg agcgcgcgcg tattgacctg gctcatgcgg ttgtctccgt
      481 gcggacgtcg gtttgcctgc cgggatgaaa acagcgcacg agatgcgtgc catgctcgga
      541 cgcttgcgcg gccggtgagg gtccaagcgg cggaggtgtc gagcaaaccg acgtggcccg
      601 cgtgcaacgc gcagcgaacg cacagcccgg cggcaatgag cgcaggtccg gcgtgatgcc
      661 tgcgatctgc gtgagctttt tgccgcgcgt gttgaggctc ggcaagctgt cgatcagacc
      721 cgccgtgtac ggatgctgcg gacggtcgag caccgcatcc acggtgccct gttcaacgat
      781 cttgcccgca tacatcacgg cgatgtcatc ggcgaggccc gccaccacgg acaggtcgtg
      841 cgtgatccag atcagcgacg tgccttgcgt gcgcacgagc gtttgcactt cggacagaat
      901 ctgcgcctgg atggtgacat cgagcgcggt agtgggttca tcggcgatga tcaggtctgg
      961 cttgtggagc atcgcaatcg cgattgctac acgctggcgc atgccgcccg acaactgatg
     1021 cgggtacgcg cgcagccgtt cgtcgggact ggcaatgccc atggccgcca gcgcttcgct
     1081 cgcctgttcg cgcgcggcgc tgcggcttac atcgcgatgc gcgcgcaccg cttcgatcat
     1141 ctgcgcgtcc acgcgttgta cgggattgag cgtggacatc gggtcctgga acaccatcgc
     1201 gatacggctg ccgcgcaggc gccgcatctc ggcttcgggc aagccgacaa tgttcttacc
     1261 cttgaacagg atctcgcctc cgaccacgcg gccgggggca tcgatgagtc ccatgatcga
     1321 gaagccagtc accgattttc ctgatccgga ttcaccgacc agacccagca cgcgaccgcg
     1381 cgcgagcgtg agcgagacgt cttcgaccgc gggcaattcg ccttcacgcg tgaagaagcg
     1441 cgttcgcaga tggcggactt cgagcgtgtt atccgcggta tggaaatcat ggagcgcagc
     1501 gttgctcatt tcacgaacct cggattgagc aattcgcgca gacgatcgcc gaccatgttg
     1561 atcgatacca gcatggccag gagcgcaaga cctggataga cgctggtcca gtattcacct
     1621 gagagcatgg tctggtaacc gttggcaatc aggagcccga gcgagggttc cgtgatcggc
     1681 acgcctagac ccagaaacga cagcgttgct tcgagcgtga tcgcgcgcgc gacctgcagc
     1741 gtgccgacca cgatcagcgg cggcaagcag ttcggcagga tgtgaacgag cacaatgcgc
     1801 cagttgggga tcgcgagact gcgcgcggct tcaacatatt cgcgccgcgc ttcgaccagt
     1861 gcttgcgctc gcgcagtgcg tgcgtaatac gcccattcga tcagcaccag cgtgagcacg
     1921 acgttcgtca cgctcttgcc caggaacgcg agcagcatca tggcgacgag gatggacggg
     1981 aaggcgagca gcaagtccac gagccgcatg atgaggctgt cgaccttgcc gccggcgtaa
     2041 gccgcgacca ggccgaatac ggttcccacc acgcccgcga tcaccgccga gccgagacct
     2101 acggataagc tcagacgcag accgtaaagc atcgctgaat acagatctct accttggccg
     2161 tcggtgccga gccagtacgc atgcgtgccg gcgccgttca tcgaaccggg ggggaggcgg
     2221 gcatcgagta cgtcgagttg caacaggtcg tagggatttt gcggcgtgat cagcggcgca
     2281 aaaatggccg cgagcactag cagtatcgcg acaatcaatg cggccatcgc cgcgggcgag
     2341 cggccaaaat ccgcaacgag ctgacgccac ggcgaccgac ggggtttgag cgcgccccgc
     2401 acaggcgttt tcgtttcggg aaccagcgga gtcgtgctca tcgtgcaccc tccagccgca
     2461 cgcgcggatc gaggaacttg tagaggatat cgacgaacag attcagcgag acaaacatgc
     2521 aaacaaccac gatcaggtac gacaggatca ccggacgatc gagcgcgttg atgctgtcga
     2581 gtatcagctt gcccgcgccc ggccaagaga acacggtctc ggtgacgacc gcgaacgcga
     2641 tggtcgaacc gaactccagg ccgatcaccg tgacaagcgg aatcagcgta ttgcgcagga
     2701 tgtgaacaag caccacacgc gtgggcgaca aacccttggc gcgagcaaaa cgcacatgtt
     2761 ccatcggcat gacctcgcgc acgccggcgc tcgtcaggcg caagaccagc gataccttga
     2821 aaagcgacag gttcagggcg ggcaggacca ggtgacgcag gccatcgagc gtgagccacg
     2881 accactgcac accgaacagg cccgcagtcg cgccgcgtcc gctggcaggc agccagccga
     2941 gcttcacact gaacaacatg atgagcatca ggccgaccca gaacgtcggc agggagaagc
     3001 cgacaatact gcctgtcatc agcatctttg agagcggatt gcgcggatgc aggcccgcga
     3061 acaaacccag cggaatacca attgccagcg ccagcaggag cgccgaaaca gcgagttcca
     3121 aggtcgcggg aaggcgttgc agaatcaggc gcatcgcggg ttcgttatag acgaaactgt
     3181 tgccgaggtc gccatgcatg gcgccggcga ggaaggccag atattgtttc cagagcggct
     3241 ggtcgaggcc gagttgagcg atgatgcgcg
//
LOCUS       DATGBK010000553         1521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_215173, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000553 DATGBK010000000
VERSION     DATGBK010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215173"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(69..1112)
                     /locus_tag="VKJ77_07955"
     CDS             complement(69..1112)
                     /locus_tag="VKJ77_07955"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC45240.1"
                     /translation="METLSGHRPTIIDVAKRAGVSKSTAARALAGAPNISDSAREQVL
                     LAADALGYTRNALAVSMRSGRSGMLGLVLPDIANPFWGEVARGAQDRAADADTSILIF
                     SSNWCARKELMHLNTLMRARVDGAILNAVTDSLGDLDRFGLPCILIGSSAERFPDACS
                     VGSDIEQGVRLGMDYLLSMGHERPALILGQKVRLAHARFLRAVHEHCAEHGIDPAALS
                     IEDADYTAEGGRLAMHRLLARRRGHLCVMAANDLMALGAMSAVREAGLRCPEDVSILG
                     FDGIQAGAFAWPGLTTIEKPARQIGAQAVEWLLDGNADADANRGKRLYLPCTLVERGS
                     LANLCGASARRIA"
     gene            complement(1183..>1521)
                     /locus_tag="VKJ77_07960"
     CDS             complement(1183..>1521)
                     /locus_tag="VKJ77_07960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45241.1"
                     /translation="KGEGVELTDEPVPLALFPQGCVYRQRAIRGLDKARRRWRVAFGS
                     HSLTGIQAAVSSGLGVSVLPTTAVLPEHRICTGLPDLPPTELALVSTGGALNAVQQAL
                     IEFLRAEIKV"
BASE COUNT          317 a          492 c          436 g          276 t
ORIGIN      
        1 ggaacgttcc caaactacgc tgaaaaatta ttcgccgcaa tcttttcagg tgttttactg
       61 ccctctgtct acgcgattcg tcgcgcggat gcaccgcaaa ggtttgcgag cgatcctcgt
      121 tcgaccaggg tgcacggtag atatagccgc ttgcctctgt tcgcgtcggc gtcggcgttg
      181 ccgtcgagca accactcaac cgcttgcgct ccaatctgcc gggcgggttt ttcgatagtc
      241 gtcagtccgg gccatgcgaa tgcacccgcc tgaataccgt cgaagccgag aatggaaacg
      301 tcttcggggc atcgcaagcc cgcctcccgc accgcgctca tcgccccgag cgccatgagg
      361 tcgttggcgg ccatgacgca caggtggcca cgacggcgcg caagcaggcg atgcatggcg
      421 aggcggccac cttcggccgt gtagtccgca tcctcaatcg ataacgcagc cgggtcaatg
      481 ccgtgctcgg cgcaatgttc atggaccgcg cgcaggaagc gcgcatgagc aagccgtacc
      541 ttctgcccga ggatcaacgc cggacgttca tgacccatgg agagcaggta gtccatgccg
      601 agccgcactc cctgctcgat gtcggaaccg accgaacagg cgtcaggaaa ccgctccgcg
      661 ctcgatccaa tcaaaatgca aggcagcccg aaacgatcga ggtcaccgag actatccgtc
      721 actgcattga ggatcgcgcc gtcgacgcgc gcgcgcatca gcgtgttcaa gtgcatcagc
      781 tcttttcgcg cgcaccagtt cgacgagaaa atcagaatgg acgtgtctgc atcggcagcc
      841 cgatcctgcg cgccacgcgc gacttcgccc cagaaaggat ttgcaatatc gggtaagaca
      901 agtcccaaca tgccgctgcg gcccgaacgc atgctgactg ccagcgcgtt gcgggtatag
      961 ccgagcgcat cagccgcgag cagcacctgc tcccgcgctg aatcggaaat gtttggcgcg
     1021 cccgccaacg cacgcgcggc agtgcttttg gaaacgcctg cgcgcttcgc cacgtcgatg
     1081 atggtcggcc tgtggccgga aagcgtctcc atagttgctc tcaaggtatt ggggtagttg
     1141 ttttgcgaac gatatcacca atcgaagaca cgctaaacag tgctaaacct tgatctctgc
     1201 acgcaggaat tcgatcaacg cctgctggac cgcattgagc gcgccgcccg tgcttaccaa
     1261 cgcaagctca gttggcggca agtcgggtag acccgtacaa atacgatgtt caggaagcac
     1321 ggcggtcgta ggcaagaccg acacgccaag ccccgatgaa acagccgcct ggatgccggt
     1381 caggctatga ctcccgaacg ctactcgcca gcgccggcgc gctttgtcga gaccacggat
     1441 cgcgcgttgc cggtacacac acccttgcgg aaacaacgcc agcgggaccg gttcgtccgt
     1501 cagctcaaca ccttcaccct t
//
LOCUS       DATGBK010000554         1774 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_53355, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000554 DATGBK010000000
VERSION     DATGBK010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53355"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(131..1249)
                     /locus_tag="VKJ77_07965"
     CDS             complement(131..1249)
                     /locus_tag="VKJ77_07965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HMC45242.1"
                     /translation="MSNPILQFGTSRFLQAHVDLFVAEAARREPSQALGRITVVQSTS
                     NADSRVRIDALRASSVYPVRIRGQQGAATIDVTVQCDAITEALNAADDWPTLRERVRH
                     DVKVIVSNTGDTGYAAFEDDIVRSLEENSIPRGFPAKLEVLLHDRFVAGAEPVTLLPC
                     ELVSRNGDTLRDLVIDIAKQWHANDAFIRYLQHDCIWVNSLVDRIVSEPIHPVGAIAE
                     PYALWAIERQPGMVLPCEHKDIVLTDNLAHYERLKLLLLNLGHTMLAELWLADQAAAD
                     TNVRDAMRNEAWRTTLESTWRDEVLPVFDALGEHDAARAYLVDVRDRFENPFLDHRLS
                     DIARNHAEKKQRRFKQAVELARQLGLNIEQRRLVAALS"
     gene            complement(1266..>1774)
                     /locus_tag="VKJ77_07970"
     CDS             complement(1266..>1774)
                     /locus_tag="VKJ77_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HMC45243.1"
                     /translation="AALIFAQLRGAEVTVLDVREDRLRFCETLLNADHVVRLDTTGAA
                     ADAKQLAELTGNEFFDIVFDATGNVKAMERGLEFVAHGGKYVLISIVSDRISFADPEF
                     HKRETTLLASRNATPDDFETVLNAMRAGLIPTAALNTHTLKLSDLPGEFSKLLDPSAG
                     VIKALVEC"
BASE COUNT          349 a          516 c          547 g          362 t
ORIGIN      
        1 cgctcaccac gagcggttcg acttcagacg taatgcgggc gccggacatt agctggcgcg
       61 tcgcgatcac gacatcgtcg ttgggatgaa ggcggataac agtgtgatcg ataggcatgg
      121 taagtattcc tcaggacagc gccgcgacaa gccgccgctg ttcaatattc aagccgagtt
      181 gacgcgcaag ctcgacagcc tgtttgaagc ggcgttgttt tttctctgcg tgatttcgcg
      241 cgatgtcgga gagccggtga tccagaaacg gattctcgaa gcggtcccgg acatcgacga
      301 gataggcgcg tgcggcgtcg tgctcaccga gggcatcgaa gacgggcagc acttcgtcgc
      361 gccatgtcga ttccagtgtc gtacgccacg cttcgttgcg catggcgtcc cggacgttgg
      421 tgtccgcggc ggcttgatcg gcgagccaga gttctgcgag catcgtatgg cccaggttga
      481 gcaggagaag cttgaggcgc tcatagtggg cgaggttgtc ggtgagcacg atatctttgt
      541 gctcgcacgg caggaccatg ccaggctgac gctcgattgc ccataacgcg tagggttcgg
      601 caattgcgcc aacgggatgg atcggttccg agacaatgcg gtcgaccagc gagttcaccc
      661 atatgcaatc gtgttgcaaa tagcggatga acgcgtcgtt tgcgtgccac tgctttgcaa
      721 tatcgataac gagatcacgc aatgtgtcgc cgttacgcga taccagttcg caagggagca
      781 aggtcaccgg ctcggcgccc gcgacaaacc ggtcgtgcag caagacctcc agcttggcgg
      841 gaaaaccgcg cgggatggag ttctcctcaa ggcttcgaac aatgtcgtct tcaaaggcgg
      901 catagccggt atcaccggta ttcgagacga tcaccttgac atcgtgccgt acgcgttcgc
      961 gcaacgtcgg ccagtcatcg gcggcgttga gagcttcggt gatcgcgtcg cattgaacgg
     1021 tgacgtcgat agtcgccgcc ccttgttggc cgcggatccg cacggggtac acgctcgagg
     1081 cgcgcaacgc gtcgatccgc acccggctgt ccgcattcga tgtgctctgc acgacggtaa
     1141 tccgtccgag cgcctgcgac ggctcacgtc gcgcagcctc cgcaacgaac aaatcgacat
     1201 gcgcctggag aaagcggctc gtgccgaact ggagaatcgg attgctcatc gtctatacgg
     1261 ttgtgtcagc actcgaccag tgccttgatc acgcccgcag acgggtcgag cagtttggaa
     1321 aattcgcccg gcaaatcact cagcttgagc gtatgcgtgt tcagcgccgc cgtgggaatg
     1381 agtcccgcgc gcatggcgtt cagcacggtt tcgaagtcgt ccggcgtggc gttgcggctc
     1441 gcgagcaggg tggtctcgcg tttgtgaaac tcaggatctg cgaacgatat ccggtcacta
     1501 acaatcgata tcaacacgta tttgccgcca tgtgcgacga actccagacc acgttccatt
     1561 gctttcacgt tgccggtggc atcgaatacg atgtcgaaaa actcgttgcc ggtgagttcc
     1621 gcaagctgtt ttgcatctgc cgcggcgccg gtcgtatcca gacgcacgac atggtccgcg
     1681 ttcagcagcg tctcgcagaa tcgcagccgg tcctcgcgga catccagcac cgttacttcc
     1741 gcgccgcgca gctgcgcgaa gatcaatgcg gcca
//
LOCUS       DATGBK010000555         1503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_169009, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000555 DATGBK010000000
VERSION     DATGBK010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169009"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1374)
                     /locus_tag="VKJ77_07975"
     CDS             complement(<1..1374)
                     /locus_tag="VKJ77_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HMC45244.1"
                     /translation="MENRVLILAPRGRDADVVGEVLSKDGRNCLACLNATMLNTELRS
                     GAGTALIAEEALSDSGMPQLFQWLGQQPTWSDFPLILLATKRTERRPKHALDRLELLG
                     NVVVLERPLNAETLRRAATSALRARLRQYEARRQLAERVEAQERLHLALAAGQLGSWE
                     LDVETGALRSTEAFRKIYGHKGPTLDYAQIIQLVHPNDREMRQRALDNCIDNNTNLTV
                     EYRVIWPDDTVHWVQSRGHPVRAPGSVPGTSTTRIIGVSLDVTDRHEVNEKILASQLV
                     VERLNDTLESRIADRTQELASANDRLMKEIHERAKVQAVLVQAQKMEALGQLTGGIAH
                     DFNNLLNVIMGNAELITRVSRDERVQAMAQTVKRATERGAKLTGQLLTFSRSSNLDLK
                     AIDVISMLHGMRDMLTLSLGTGIHFGTRFDVKEAWTDADANQLELAVLNLAINARDAM
                     PDGGLLTI"
BASE COUNT          236 a          497 c          473 g          297 t
ORIGIN      
        1 aatggtcagc aggccgccgt cgggcattgc gtcgcgcgcg ttgatggcta gattcagaac
       61 ggcgagttcg agctggttgg catcggcgtc ggtccaggcc tctttcacgt cgaagcgggt
      121 gccgaaatga atgcccgttc ccagcgataa cgtcagcatg tcgcgcatgc catgcagcat
      181 cgaaatgacg tcgatggcct tcaggtccag attgctgctg cgtgaaaatg tcagtagctg
      241 cccggtcagc ttcgcgccgc gttcggtcgc ccgcttgacc gtctgcgcca tggcctgcac
      301 gcgttcatcg cggctcacgc gcgtgatcag ttccgcgttg cccatgatga cgttcagcag
      361 gttgttgaag tcgtgggcaa tgccaccggt cagttgcccg agcgcttcca tcttctgcgc
      421 ctgcacgagc accgcctgga ccttcgcgcg ctcgtggatc tccttcatca agcggtcatt
      481 cgccgacgcc agttcctgcg tccgatccgc gatacggctt tccagcgtgt cgttcagacg
      541 ctcgactaca agctggctcg cgagaatctt ctcgttgact tcgtgacggt cggtgacatc
      601 cagcgacacg ccgatgatcc gagtcgtcga ggtccccgga acgctgcccg gcgcgcgcac
      661 cggatggccg cgcgactgga cccagtggac ggtgtcatcc ggccagatca cccgatattc
      721 gaccgtgagg ttcgtgttgt tatcgatgca attatccagc gcgcgctgac gcatctcgcg
      781 gtcattggga tgtacaagct ggatgatctg cgcgtagtcc agcgtcggcc ccttgtgtcc
      841 gtagatcttg cggaacgcct cggtggagcg cagcgcgccg gtctccacat cgagttccca
      901 cgatcctaac tggcctgccg caagcgccag atgcagccgt tcctgcgcct ccacgcgctc
      961 ggcaagctga cgccgcgcct cgtattgccg caagcgtgcg cgcaatgccg acgtcgccgc
     1021 gcgccgcaac gtttccgcgt tgagcgggcg ctccagcacc acaacgttgc ccagcagttc
     1081 aagccggtcc agcgcatgct tcgggcgccg ttcggtgcgt ttggtggcga gcaggatcag
     1141 cggaaaatcg gaccacgtcg gctgctggcc gagccactgg aagagctgcg gcatgccgct
     1201 gtcggagagt gcttcttccg cgatcagcgc cgtgcccgcg ccgctgcgca gctcggtgtt
     1261 cagcatggtg gcgttgaggc aggcgagaca gttgcggccg tccttgctca gcacttcacc
     1321 gaccacgtcc gcgtcgcggc cgcgtggggc aaggatcagg acacggtttt ccacggctcg
     1381 gcggccctcg cgttggggct tcccagcatg gctgtgtcac cgcggtacgc cggcaagccg
     1441 gcgagcacac catcgaaatc gcgcagtgct tcactcagct ccaggccgcc gcgcgtcagc
     1501 ctg
//
LOCUS       DATGBK010000556         2819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_238251, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000556 DATGBK010000000
VERSION     DATGBK010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2819
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238251"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..1569)
                     /locus_tag="VKJ77_07980"
     CDS             complement(58..1569)
                     /locus_tag="VKJ77_07980"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0019538 - protein metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HMC45245.1"
                     /translation="MDFSIKACDWSKGSANGFLNGKADVVVLGVFEAQTLTGAAREMD
                     LVTKGLLTRTVKAGDMSGKAGSTLMLTEVTGIGASRILLVGLGKQDAFNQKAYTEAAR
                     AAWRALLATKIANVAFTLAQLPVPERTSDWGVRSAILALRELTYKFTQMKSKPENGDR
                     ALKKVVFSIDAADEKAAKLAVKHATALANGMDLTRDLGNLPPNVCTPTYLGHTAKKLG
                     KEFKLKVEVLGQKQIEALGMGSFLSVAKGSIEPPAFIVMHHQGAGAKAAPVVLVGKGI
                     TFDTGGISIKPGEGMDEMKYDMLGAGSVFGTMRAIAEMGLKLNVIGVVPTCENMPAGN
                     AVKPGDIVTSMSGTTIEVLNTDAEGRLILCDALTYVERFKPAAVIDIATLTGACVVAL
                     GHHNTALFSKDDALAGELLDASKEAIDPTWRMPLDDEYQDLLKSNFADVANIGGRPGG
                     AITAACFLSRFAQNYPWAHLDIAGTAWKSGAAKGATGRPVPLLTQFLVDRAGQ"
     gene            1791..>2819
                     /gene="lptF"
                     /locus_tag="VKJ77_07985"
     CDS             1791..>2819
                     /gene="lptF"
                     /locus_tag="VKJ77_07985"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HMC45246.1"
                     /translation="MIFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGFAASGQVD
                     PRDVVVLIGLTVIGYLAVIMIVTLFVSILFVLTRWYRDSEMVVWLASGVSQMALIKPV
                     ALFSTPIIIAIVFFAFVVWPWSNLQSKLIKARFQQRDEVSLLAPGQFRESQTSHRVFF
                     IEKMSPDQGHVQNVFVTSTEGGKVNVVVSKNGHTETHANGDRFVVLENGRRYDGIPGQ
                     PNFRIMEFERYGVKIQSQQFVNTPTTTGMYTDELLANPTRDNLAEIAWRAGLPLIAIN
                     LMLLAIPLSYQNPRRSRTINLVMAVLIYLTYSNLLNVVQSWIEQGRVSFVLGLVGLHI
                     LVSIMVAFI"
BASE COUNT          530 a          889 c          787 g          613 t
ORIGIN      
        1 tggaaatcga tgcgcgtcat gccggtgcct ccccgctcac acttgcttca atcacgctca
       61 ttggcccgcg cgatcgacca ggaactgcgt gagcaagggc accggacggc cggttgcgcc
      121 ctttgccgcg ccgcttttcc acgccgtacc cgcgatgtcg aggtgagccc acggatagtt
      181 ctgcgcgaac cgcgacagga aacacgccgc ggtgatcgcg ccgcccggcc gtccgccaat
      241 gttcgcgaca tcggcgaaat tagacttcag caggtcctgg tattcgtcgt cgagcggcat
      301 gcgccaggtc ggatcgatgg cttccttcga tgcgtccagc aactcgcccg ccaacgcgtc
      361 gtccttcgag aacaacgctg tgttgtgatg gccaagcgcg accacgcacg cgcccgtgag
      421 ggtggcgata tcgatgactg ccgcaggttt gaagcgttcc acgtaggtca gtgcgtcgca
      481 gagaatcagg cggccttccg cgtccgtatt caacacttcg atagtcgtgc cggacatgga
      541 cgtgacaatg tcacccggct tcaccgcgtt gccggccggc atgttctcgc aggtcggcac
      601 cacaccgatc acgttgagct tcagccccat ttccgcgatc gcgcgcatgg tgccgaacac
      661 cgagccggcg ccgagcatgt cgtacttcat ctcgtccatg ccttcgcccg gcttgatgga
      721 gatgccaccg gtgtcgaacg tgatgccctt gccgaccagc acgaccggag cagccttcgc
      781 gcctgcgccc tgatgatgca tcacgatgaa agcaggcggt tcgatcgagc ctttcgcgac
      841 cgacaggaac gaacccatgc ccagcgcttc gatctgcttc tggccgagca cttctacctt
      901 cagcttaaat tccttgccca actttttcgc ggtatggccg agatacgtgg gcgtgcagac
      961 gttcggcggc aagttgccca gatcgcgcgt caggtccatg ccgttggcga gcgccgtggc
     1021 gtgtttcacc gcaagcttcg ccgctttttc gtcggcggcg tcgatgctga acaccacttt
     1081 cttcaacgcg cgatcaccgt tttccggctt gcttttcatc tgcgtgaact tgtaggtcaa
     1141 ctcgcgcagc gcgaggatgg cagagcgcac gccccagtcg ctggtgcgct cgggcaccgg
     1201 cagttgagcg agcgtgaacg ccacgttcgc gatcttcgtg gcgagcagcg cacgccatgc
     1261 ggcgcgcgcg gcttccgtgt aagccttctg attgaaagcg tcctgcttgc cgagcccgac
     1321 cagcaaaatc cgtgacgcgc caatccccgt cacttcggtc aacatcagcg tggaaccggc
     1381 cttgccgctc atgtcgccgg ctttcaccgt gcgcgtaagc agtcccttgg tcaccaaatc
     1441 catctcgcgg gctgcacccg tcaacgtctg cgcttcgaac actccgagca ccactacatc
     1501 ggcctttccg ttaaggaaac catttgccga gcctttgctc caatcacagg cttttatgct
     1561 aaagtccatc gcgcttatcc tcggataaaa tctgggctga aggatgaaag ccgcaattat
     1621 ccgctatttt tttccgaggc ggtcgcgagc agcgataccc ggattgaatg tctcgctcat
     1681 gactcgttca atcggcacgt ttgtcatggc gtgtggtcca aacgcggatc caaacgcgga
     1741 ccgcacataa tccaaccgtc tcgtcgccgc cggtttccac ctgacaatca atgatcttcg
     1801 aacgctccct tcagcgagaa ctcgcgtata cggctggcgc cgtattcatg gtgctgctca
     1861 cgatcatgct gaccacgatg atgatccgta tcgtcggctt tgcagcatcg gggcaagtcg
     1921 atccacgcga cgtcgtcgtg ctgatcggcc ttaccgtcat cggctatctc gccgtgatca
     1981 tgatcgtgac cctgttcgtg tccatcctct tcgtgctgac gcgctggtat cgcgactcgg
     2041 agatggtcgt gtggctggcg tcgggcgtca gtcaaatggc gctgatcaaa ccggtcgcgc
     2101 tcttctccac gcccatcatc atcgccatcg tattttttgc gttcgtcgtc tggccttggt
     2161 caaatttgca aagcaagctg atcaaggcac ggttccagca acgcgacgaa gtctcgctgc
     2221 tcgcgcctgg ccagttccgt gaatcgcaga ccagccaccg cgtgtttttt atcgaaaaaa
     2281 tgtcgccgga tcaggggcac gtgcagaacg tgttcgtgac gagcacggaa ggcggcaagg
     2341 tcaacgtggt ggtatcgaag aatggccata ctgaaacgca cgccaatggc gaccgtttcg
     2401 tggtgctgga aaacggccgg cgctatgacg gcattccggg ccagccgaac tttcggatca
     2461 tggaattcga gcgctacggc gtgaaaattc aaagccagca attcgtgaac acgccgacca
     2521 cgaccggtat gtacacggac gaattgctag ccaatcccac ccgcgacaat cttgccgaaa
     2581 ttgcttggcg cgcgggtctg ccgctgatcg cgatcaacct gatgctgctc gccattccgc
     2641 tctcttacca gaacccgcga cgcagtcgca caatcaatct cgtgatggca gtgctgatct
     2701 atctgacgta ttccaacctg ctgaacgtgg ttcagtcgtg gatcgagcaa ggccgggtat
     2761 cgttcgttct cgggctggtg ggactgcaca tactcgtctc gatcatggtc gcgttcatc
//
LOCUS       DATGBK010000557         3303 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_30343, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000557 DATGBK010000000
VERSION     DATGBK010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30343"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..869
                     /locus_tag="VKJ77_07990"
     CDS             <1..869
                     /locus_tag="VKJ77_07990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012399830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HMC45247.1"
                     /translation="ALVEARNAARRGLNVNKPSNNLNSDPVDPRFRGDPDHPFDEPSA
                     TIDLGDEEDPGPKLYTRRADLRGRTPMQREYLKQIIAHDVTFGIGPAGTGKTYLAVAC
                     AVDSLERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTA
                     KMFERQMIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDT
                     AQVDLPRGHRSGLIEAQHILADVRGIAMTKFTSVDVVRHPLVARIVEAYDAQSERDSA
                     AAAIAAAKYRSE"
     gene            866..1339
                     /gene="ybeY"
                     /locus_tag="VKJ77_07995"
     CDS             866..1339
                     /gene="ybeY"
                     /locus_tag="VKJ77_07995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HMC45248.1"
                     /translation="MSMPKLALTLQFPAAKTFPEHKALLPRATVASWIKASLFADAEL
                     TVRFVDTEEGRTLNRSYRQKDYATNVLTFAYAESEDDPVTGDLVLCCPVVEREAREQN
                     KPLAAHYAHLIVHGTLHAQGYDHEDSAEAEEMESIETGIMQKLGFTDPYLPLPPN"
     gene            1376..2041
                     /locus_tag="VKJ77_08000"
     CDS             1376..2041
                     /locus_tag="VKJ77_08000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003839 - gamma-glutamylcyclotransferase
                     activity [Evidence IEA];
                     GO_function: GO:0061928 - glutathione specific
                     gamma-glutamylcyclotransferase activity [Evidence IEA];
                     GO_process: GO:0006751 - glutathione catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HMC45249.1"
                     /translation="MKELPAQIPDDYPPVFGESRLLTDEELAASREKALAHWDRKSDL
                     WLFGYGSLIWNPGLPAVETVRSKVHGYHRGLYLWSRVNRGTPEQPGLVLALDRGGSCT
                     GMAFRLAAEGAEPHLDVLWRREMAMNSYRVAWLPCTLIDGRRVAALAFVMRREVSTYT
                     GKLPDPMVRHVLGCATGRYGTTLDYVSRTVAALRECGMPDRHLEALLQRCQSVNSVNS
                     SQE"
     gene            2277..3185
                     /locus_tag="VKJ77_08005"
     CDS             2277..3185
                     /locus_tag="VKJ77_08005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HMC45250.1"
                     /translation="MNDAYPSRRHTDKPPEKRTLLERLTDFISHEPESRDELLEVLQD
                     AHERNLLDADSLSMIEGVFQVSELCARDIMIPRAQMDAINIAETPEQFIPFMLEKAHS
                     RYPVFESNRDNVIGVLLAKDLLRYYHEEEFDVRGMLRPAVFIPESKRLNVLLHDFRVN
                     RNHIAIVVDEYGGVAGLITIEDVLEQIVGDIEDEYDFDEEAGNIIATPDGRHRVRALT
                     GIEQFNEQFGTHYSDDEVDTIGGLVTHRFGRVPHRGEKVRIDEFVFEILRGDARQIHV
                     LRVRRAPNSNPLDGNSRDHDNDDERD"
BASE COUNT          693 a          988 c          979 g          643 t
ORIGIN      
        1 ttgcgctggt cgaagcgcgc aacgcggcgc ggcgcgggtt gaacgtcaat aagccatcga
       61 ataatctgaa ttctgacccg gtagatccgc gttttcgtgg agaccccgat catcccttcg
      121 atgaacccag cgcgaccatc gacctgggcg acgaagagga tccgggcccg aagctgtaca
      181 cgcgacgcgc cgatctacgc ggccgcacgc caatgcagcg tgaatatctg aagcagatca
      241 ttgcgcacga tgtgacgttt ggtatcggcc cggcgggtac gggcaagacg tatctggcgg
      301 tggcgtgcgc ggtggattcg ctcgaacgcg atcaggtaaa acgcattgtg ctgacacgcc
      361 cggcggtgga agccggcgaa cgtttgggtt tcctgccggg cgatctcgcg cagaaagtgg
      421 atccgtattt gcgtccgttg tacgacgcgc tctacgacct gctcggcttc gataaaaccg
      481 cgaaaatgtt cgagcgccag atgatcgaaa tcgcgccgct cgcgtacatg cgtggccgga
      541 cgctgaatca cgcgttcatc attttggatg aagcgcagaa caccacgccc gagcagatga
      601 agatgttcct gacgcggatc ggcttcgggt cgaaggccgt tgtgaccggc gacaccgcgc
      661 aggttgattt gccgcgcggt catcgaagcg ggctgattga agcgcaacac atactggctg
      721 atgtccgcgg tatcgcgatg acaaagttca ccagcgtgga cgtggtgcgg catccgctgg
      781 tcgcgcgcat cgtggaagcg tacgacgcgc agtcggagcg cgactccgct gccgctgcga
      841 ttgccgctgc aaaatatcgc tctgaataag catgcccaaa cttgcactga cactgcagtt
      901 tcccgccgcc aaaacgttcc ctgaacacaa ggcgctgttg ccgcgcgcaa ccgtcgccag
      961 ctggatcaag gcgtcgctgt tcgcggacgc ggaactgacc gtgcgtttcg tcgataccga
     1021 ggaaggccgg acgctgaacc ggtcttatcg gcagaaggat tacgccacta acgtgctgac
     1081 gttcgcctac gccgagtcgg aagacgatcc ggtcacgggc gacctggtgc tctgctgtcc
     1141 ggtagtggaa cgcgaggcgc gcgagcagaa caagccgctc gccgcgcatt atgcgcatct
     1201 gatcgtgcac ggtacgctgc acgctcaggg ctacgatcat gaagattcgg cggaagcgga
     1261 agaaatggaa tcgatcgaaa cgggcatcat gcaaaagctt ggcttcaccg atccttacct
     1321 gccgttgccg cccaactaag ccgtgactga cgacccttcc cctctccccg atctgatgaa
     1381 ggaactgcct gcgcagattc ccgacgacta tccgccggtg ttcggggagt cgcgtcttct
     1441 caccgacgaa gaactcgcgg catcacgtga aaaagcgctg gcgcactggg atcgcaagtc
     1501 ggatctctgg ctgtttggct atggctcgct gatctggaac ccgggcttgc ccgcggtgga
     1561 aacggtgcgc agcaaggtgc acggttatca tcgcggactg tatttgtggt cgcgcgtgaa
     1621 tcgcggcacg cccgaacagc ctgggctcgt actggcgctg gatcgcggcg gttcttgcac
     1681 gggcatggcg ttccggcttg ccgccgaagg cgcggagccg caccttgacg tgctgtggcg
     1741 acgcgaaatg gcgatgaact cctatcgcgt ggcctggttg ccgtgcacgc tgatcgacgg
     1801 ccggcgcgtg gctgcgctgg cgttcgtgat gcgacgtgag gtgtccacct acaccggcaa
     1861 gctccctgac ccaatggtcc gccacgtgct tggctgcgcc accggccgat acggcaccac
     1921 gctcgattac gtcagccgca cggtcgccgc actgcgcgaa tgcggtatgc ccgacaggca
     1981 cctcgaagcg ctgttgcagc gctgccagag tgtgaactcc gtgaattcgt cgcaggaatg
     2041 agtgcgacgg gacgcgttaa aagcacgcat aaaactgctc aaaatgcttg gtaatgtact
     2101 caactgcgac cgatcggcca acgtcaccgg ctcgaaatac tcggccaata tttatcagtt
     2161 acgatgtttc tacgagattt gaacgtcttc gtgccggccc gaattggcgc gaattttcct
     2221 tggtgtattc ttaactttcc gaaatttcgc gtccggaaca atccgggcgc cccactatga
     2281 acgacgccta tcccagtcga cgacacaccg acaaaccgcc ggaaaagcgc acgctgctcg
     2341 agcgcctgac cgatttcatc tcgcacgaac ctgaatcgcg cgacgaattg ctggaagtcc
     2401 ttcaggacgc ccacgaacgc aatctgctcg acgcggattc gctctccatg attgaaggcg
     2461 tgttccaggt ctcggaactc tgcgcgcgtg acatcatgat tccgcgtgcc cagatggacg
     2521 ccatcaacat tgccgaaacg cccgagcagt tcattccgtt catgctcgaa aaagcgcact
     2581 cgcgctatcc ggtattcgaa agcaaccgtg acaacgtgat cggcgtgctg cttgcaaaag
     2641 acttgctgcg ctattaccac gaagaagaat tcgatgtccg cggcatgctt cgccccgccg
     2701 tgttcatccc ggaatcgaaa cgcctgaacg tattgctgca cgatttccgc gtgaaccgga
     2761 atcacattgc catcgtcgtt gatgaatacg gcggtgtggc gggactgatc acgattgaag
     2821 acgtgctgga acagattgtt ggcgacattg aagacgaata cgacttcgac gaagaagccg
     2881 gcaacatcat tgcgacaccg gatggacggc atcgcgtgcg ggcgctgact ggcattgagc
     2941 agttcaacga gcagttcggc acccactact ccgacgacga agtcgacacc atcggcggac
     3001 tggtcacgca ccggttcgga cgcgtgccgc atcgtggaga gaaggttcgt atcgacgaat
     3061 tcgtgtttga gattctgcgc ggcgacgccc gccagatcca cgtgttgcgc gtacggcgcg
     3121 cgcccaactc gaacccgctc gacggcaatt cgcgcgacca cgacaatgac gacgaacgcg
     3181 attgaacacc attaaacgcg tttgcttctc acttgatcga actatgcgtt ggaacgccac
     3241 tgagcagccc tgacctgcct aagcctgtaa cactgcgtgc tcacactacg cgacagttgc
     3301 cag
//
LOCUS       DATGBK010000558         1766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_53432, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000558 DATGBK010000000
VERSION     DATGBK010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53432"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1702
                     /gene="argS"
                     /locus_tag="VKJ77_08010"
     CDS             <1..1702
                     /gene="argS"
                     /locus_tag="VKJ77_08010"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004522947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HMC45251.1"
                     /translation="EASFVAPVIVLERPKVAAHGDVASNVAMQLAKPLRANPRQLAQQ
                     IVDAVLALPAALGLVDAAEVAGPGFINLRLAAAAKQAVVPAVIVEGARYGYNPRDEGK
                     RVLIEFVSANPTGPLHVGHGRQATLGDALANLLVTQGNAVHREFYYNDAGVQIGNLAT
                     STQLRARGFNPDSKEWPENAYNGEYIADIARDYLAGATVAAKDGAPVTAKGDVDDIDA
                     IRVFAVAYLRHEQDLDLTAFGVDFDQFYLESSLYNEGRVQATVDSLIAAGKTYEQDGA
                     LWLRTTDDGDDKDRVMRKSDGTYTYFVPDVAYHVAKWQRGFTKVINVQGSDHHGTIAR
                     VRAGLQGLGIGIPKGYPDYVLHKMVTVMRNGVEVKISKRAGSYVTVRDLIEWSGGMTP
                     GEEVAPDQIDEDTIRRGRDAVRFFLISRKADTEFVFDIDLALKQSDENPVYYVQYAHA
                     RICTILGDWKTKYAGNAETLPNVDLSPLSSERAMALLNKLAEYPDMLSHAADELAPHA
                     VAFYLRDLAGEFHSFYNAERVLVEEDGVRNARIALLAATRQVLENGLALIGVSAPVKM
                     "
BASE COUNT          343 a          559 c          571 g          293 t
ORIGIN      
        1 ggaagcgagc tttgtcgcgc cggtcatcgt cctggagcgc ccgaaagtcg cggcgcacgg
       61 tgacgtggcg tcgaacgtgg ccatgcaact cgccaagccg ctgcgcgcga atccgcgtca
      121 actggcgcag cagatcgtgg atgcggtgct cgctctgccg gccgctcttg gcctggtcga
      181 tgcggccgaa gtcgccggcc cgggcttcat caacttgcgg ctggcggcag cggcgaaaca
      241 ggccgtggtg ccagcggtta ttgtcgaagg cgctcgctac ggctacaacc cgcgcgacga
      301 aggcaaacgc gtgctgatcg aattcgtttc ggccaacccg accggaccgc tgcacgtcgg
      361 ccacggccgc caggccacgc tcggcgacgc attggcgaac ctgctcgtca cgcaaggcaa
      421 cgcggtgcat cgcgagttct actacaacga cgcaggcgtg caaatcggca atctggccac
      481 gtccacgcaa ttgcgcgctc gtggtttcaa tccagacagc aaggaatggc cggaaaacgc
      541 atacaacggc gagtacatcg cggacatcgc acgcgactat ctggctggcg cgaccgtcgc
      601 ggccaaggat ggcgccccgg tgacggcgaa gggcgatgtg gacgatatcg acgctattcg
      661 cgtctttgcc gtcgcgtatc tgcgccacga acaggatctg gacctgaccg cgttcggcgt
      721 ggacttcgac cagttctacc tggaatcgtc gctgtataac gaaggccgcg tacaagccac
      781 cgtggactcg ctgatcgccg ccggcaagac ctacgaacag gacggcgcgc tatggctgcg
      841 cacgaccgac gacggcgacg acaaggaccg cgtgatgcgc aagtccgacg gtacgtacac
      901 gtatttcgtg ccggacgtcg cgtatcacgt ggcgaagtgg caacgcggct tcaccaaggt
      961 catcaacgtg cagggctcgg accaccacgg caccatcgcg cgcgtgcggg cggggctgca
     1021 ggggcttggc atcggtattc cgaagggcta tcccgactac gtgctgcaca agatggtcac
     1081 ggtcatgcgc aacggcgtgg aagtgaagat ctcgaagcgc gcgggcagct atgtgacggt
     1141 gcgcgacctg atcgaatggt cgggcggcat gacgccgggc gaggaagtag cacctgacca
     1201 gatcgatgaa gacaccattc gccgcggccg cgacgccgtg cgtttcttcc tgatctcgcg
     1261 caaggccgac acggaatttg tcttcgatat cgacctggca ctcaagcaaa gcgacgaaaa
     1321 cccggtgtat tacgtgcagt acgcgcacgc acggatctgc acgatcctcg gcgactggaa
     1381 gacgaaatac gccggtaatg cagagacgct gccgaacgtc gatctttcgc cgctctcgag
     1441 cgaacgcgcg atggcgttgc tgaacaagct cgccgagtat ccggacatgc tctcgcacgc
     1501 agcggacgaa ctcgccccgc acgcggtcgc gttctacctg cgtgacctcg cgggcgaatt
     1561 ccactcgttc tacaatgcgg agcgcgtgct ggtggaggaa gatggcgtgc gcaacgcgcg
     1621 cattgcgttg cttgccgcca cccggcaagt gctcgaaaac ggcctcgcgc tgatcggcgt
     1681 gtccgctccc gtcaaaatgt gattcccacg ccgggcactt ccggcgcgtc gggcgtgtca
     1741 taagcccggc gctccggaag tagcgc
//
LOCUS       DATGBK010000559         1678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_145711, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000559 DATGBK010000000
VERSION     DATGBK010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145711"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1184)
                     /locus_tag="VKJ77_08015"
     CDS             complement(<1..1184)
                     /locus_tag="VKJ77_08015"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004474 - malate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase G"
                     /protein_id="HMC45252.1"
                     /translation="MSQMIKRNGLQVAAELSQYVDDEALSGIGIESDAFWKGFDALVH
                     DLAPKNRALLAERDRLQTELDQWHKANPGPVRDLKAYRAFLEGIGYIVPASAAVQATT
                     QNVDTEIAEQAGPQLVVPLSNQRYALNAANARWGSLYDALYGTDAIPDTDGAERTARF
                     NPARGAAVIARARAFLNEAAPLANGSHVDATAYRVESGKLVVTLKNGSSALKSPNQFI
                     GFQGDAGSPSAVLLKHHGLHFEIQIDATDSIGKTDAAHVKDVLMEAAVSTIIDCEDSV
                     AAVDAADKVELYRNWTGLMKGDLAEEVTKNGKTFTRRLNADREYTAPDGSTVKLHGRS
                     LLFIRNVGHLMTNPAIVDRDGHEIPEGILDAVMTSLGAMHDLQNKLNSRTGSIYIVKP
                     KM"
     gene            1487..>1678
                     /locus_tag="VKJ77_08020"
     CDS             1487..>1678
                     /locus_tag="VKJ77_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012363895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HMC45253.1"
                     /translation="MTDLSAFPITAKWPAQHPDRIQLYSLPTPNGVKVAIMLEETGLS
                     YEPHLVSFETNDQMSPAFLS"
BASE COUNT          305 a          509 c          493 g          371 t
ORIGIN      
        1 tgcatcttcg gcttgacgat gtaaatcgac cccgtgcgcg aattgagctt gttttgcagg
       61 tcgtgcattg caccgagcga cgtcatcacg gcgtcgagaa tgccttcggg aatctcgtgc
      121 ccgtcgcgat cgacaatagc cggattcgtc atcagatgcc cgacgttacg gatgaacagc
      181 agcgagcggc cgtgcagctt caccgtcgag ccatcgggcg cggtgtattc gcgatctgcg
      241 ttcaggcggc gcgtgaaggt cttgccgttc ttggtgactt cctccgccag atcgcctttc
      301 atcaggccgg tccagttgcg gtagagctcg actttgtcgg cggcgtcgac ggctgcaacc
      361 gaatcctcgc aatcgataat ggtcgagacc gctgcctcca tcaacacgtc cttcacgtgc
      421 gcggcatcgg tcttgccgat ggagtcggtc gcgtcgatct ggatctcgaa gtgcaggccg
      481 tgatgcttaa gcagcaccgc ggaaggtgag ccagcatcgc cctggaaacc gatgaactga
      541 ttcggcgatt tcaaagccga cgagccgttt ttcaacgtga caacaagctt gccgctttct
      601 acgcgataag cggtggcatc gacgtgagaa ccgttggcga gcggcgcggc ttcattgagg
      661 aacgcgcgag cgcgggcaat taccgctgcg ccgcgagccg ggttgaatcg cgcggtgcgt
      721 tcggcgccgt cggtgtcggg gatcgcgtca gtgccgtaga gcgcgtcata caaactgccc
      781 cagcgcgcat tcgcggcgtt gagcgcatag cgctggttgg agagcggcac gacaagttgc
      841 ggcccggctt gttcggcgat ttccgtatcg acgttctggg tggttgcctg cacagccgcg
      901 ctcgccggca cgatgtagcc gatgccttcc agaaacgcgc ggtacgcctt caggtcgcgc
      961 accggtcctg gattcgcctt gtgccactga tccagctccg tctgcaaccg gtcacgttcg
     1021 gcaagcagcg cgcggttctt cggggcgagg tcgtggacga gggcatcgaa gcctttccag
     1081 aacgcgtcgc tctcaatgcc gatgcccgac agcgcttcat catcgacgta ctggctgagc
     1141 tcggctgcaa cctgtaatcc gtttcgcttg atcatttgac tcatgggata tctccagctc
     1201 tgtttgtatt cggtgcaatc cggtgcaatc gcgcgttcta gccgccatgc ggtgtattcg
     1261 agattcctga taccgctatg ttaacgcttc tttatcgatc cgatccgttt ctggctcgct
     1321 tacggccgcg tcgccgtgcc gtgtaaaaag acaagcgtcg ccggaatgtc tatatttgtc
     1381 gtcctgcaca cccagacaaa ccaacacccg atccggcgtg ctgtcgcgcc gtatcgccga
     1441 gcccgctctt ccagagtctt aaagtctgaa cgtttaaaag gtaaccatga ccgatctctc
     1501 cgccttcccc atcacggcaa aatggcctgc gcagcatccc gaccggattc agctttattc
     1561 gctgccgaca cccaacggcg tcaaggtcgc gatcatgctg gaggagaccg gactgtcgta
     1621 cgagccgcat ctggtcagct tcgagaccaa cgaccagatg tcgccggcgt ttttatcg
//
LOCUS       DATGBK010000560         1691 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_307780, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000560 DATGBK010000000
VERSION     DATGBK010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307780"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..>1691)
                     /locus_tag="VKJ77_08025"
     CDS             complement(1..>1691)
                     /locus_tag="VKJ77_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012339497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HMC45254.1"
                     /translation="GLILHSLGDDDFLARADRVALRPGALWSEQQQGTNAIGTAIAAR
                     DAAMVFGDQHYLRANRFLACSSVPILDPFGELLGVLDVTGDCRGHSRHTMALAKMSAQ
                     MIENHLFTSAFPEALRIHFHGRPEFIGTLMEGIAAFRADGRFLSANRSAQFQFGLPLA
                     SLRAHTLSSLFNVSCGELFDRLRSGVGTPVERTISLCLHSGVNVFACADLRRSTAVAL
                     STDTRDVTDVVARKRVSEPQPKLSGLRYLMTGDAQVAALVERVRKVIGKNIPILIGGE
                     TGTGKDVLASAVHRDSPRSDGPFVAVNCASIPDTLIEAELFGYEEGAFTGASKRGACG
                     KILQADGGTLFLDEIGDMPFSLQSRLLRVLQERTVTPLGSTRAVPVDFALICATNRNL
                     RERVTAGEFREDLYYRINGLLVTLPPLRQRTDLAVTVEKILRAERATGEPIRVSPEVL
                     AAFTRHPWPGNFRQLANVLRTACAMLDDDETCIDLDHLPQDFFDDEPDAKNAQAITSP
                     SVKDSARLDDLALSAVAAALETHAGNISAAARMLGVSRNTLYRKMAALDETRRR"
BASE COUNT          335 a          534 c          516 g          306 t
ORIGIN      
        1 ttatcgacgc ctcgtttcgt cgagcgcagc catcttccgg tagagcgtgt tacgcgatac
       61 gcccagcatt cgcgcggccg ccgagatgtt gcccgcgtgt gtctcaagcg ctgcagcgac
      121 agccgacaac gcgagatcgt ccaggcgcgc gctgtccttc acagacggcg acgtgatcgc
      181 ttgcgcgttc ttcgcgtcgg gttcgtcatc gaagaaatct tgcggcagat ggtccaggtc
      241 gatgcatgtc tcatcgtcgt cgagcatcgc acacgcggtc ctcagcacgt tcgccagttg
      301 ccggaaattt cctggccacg ggtggcgggt gaacgccgcc agcacctcgg gtgaaaccct
      361 gatgggctca ccggttgccc gctcggcacg caggatcttt tcgacggtca cggctagatc
      421 agtacgctga cgcaatggcg gcaacgtcac cagcagaccg ttgatccggt aatacagatc
      481 ctcgcggaat tcgccggcag tgacgcgctc gcgcagattg cgattggtcg cgcagatcag
      541 cgcgaaatcc acgggcacgg cgcgcgtgct gccgagcggt gtcaccgtgc gctcctgcag
      601 cacacgcagc aaacggcttt gcaatgagaa cggcatatcg ccgatttcat caaggaacaa
      661 ggtgccgccg tcagcttgca ggatcttgcc gcaagcaccg cgtttggacg cgcctgtgaa
      721 cgcgccctct tcataaccga acaattccgc ttcgatcagc gtgtccggga tcgacgcaca
      781 attcaccgca acgaacggtc cgtcgctacg cggcgagtca cgatgcaccg cgctcgccag
      841 gacatctttg ccggtacccg tctcgccgcc gatcaggatc ggaatatttt taccgatcac
      901 cttgcgcact cgttctacga gcgccgcaac ctgggcgtcg ccggtcatca ggtaccgcag
      961 gccggagagc tttggttgcg gttcggatac gcgtttgcga gccacgacgt cggtgacatc
     1021 gcgggtgtcc gtcgagagtg cgacggcggt cgaacgcctc agatccgcgc aggcaaatac
     1081 gttgacgccg ctatgcaggc agagcgagat cgtgcgctcg acaggcgttc ccacgccgct
     1141 gcgcagccgg tcgaacaact cgccgcacga gacgttgaac aacgacgaca gcgtatgcgc
     1201 acgcaacgac gcaagcggca agccgaactg aaattgtgcg ctgcgatttg ccgagagaaa
     1261 gcgcccatcg gccctgaacg cagcaatgcc ttccatcaac gtgccgataa actcgggccg
     1321 cccgtgaaaa tggattcgca atgcttcggg aaaggcgctg gtgaacaaat ggttctcgat
     1381 catctgcgcg gacatcttcg caagcgccat ggtgtggcgg ctatggccgc ggcaatcgcc
     1441 ggttacgtcg agaacgccta gcagctctcc gaatggatcg agaatcggca cgctcgaaca
     1501 cgcgagaaac cggttcgcac gcagatagtg ttgatcgccg aacaccatgg cggcgtcgcg
     1561 tgccgcaatg gccgtgccaa tcgcattggt gccttgctgc tgttcgctcc acagcgcgcc
     1621 ggggcgcaac gcgacacggt cggcgcgagc gaggaaatcg tcgtcgccga gcgaatgcag
     1681 gatcagccct t
//
LOCUS       DATGBK010000561         2377 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_261663, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000561 DATGBK010000000
VERSION     DATGBK010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261663"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..863)
                     /gene="recX"
                     /locus_tag="VKJ77_08030"
     CDS             complement(99..863)
                     /gene="recX"
                     /locus_tag="VKJ77_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HMC45255.1"
                     /translation="MNPVDAEERLKRARAVLEQAQTLVQTQAAPAKAARKSQSKPAVI
                     SPGVVGEIGIDVADPFESFEQCVPSAADAVSESQNAEPVYTRGSTARGKASATGDSKR
                     KGPQLSLRGRALGYLSRREHSRTELSRKLTPHLGEGDSLDTLLDALEREGWLSNERFV
                     ESVVHRRGTRLGTSRIVHELKRNGIDETLIQDAGTELKKTELTRAREVWSKKFGEPPT
                     TPAERAKQARFLATRGFNGGTIVKVLKMGDDDFIDE"
     gene            complement(1750..>2377)
                     /gene="recA"
                     /locus_tag="VKJ77_08035"
     CDS             complement(1750..>2377)
                     /gene="recA"
                     /locus_tag="VKJ77_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HMC45256.1"
                     /translation="IVIDSVAALVPKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKR
                     TNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKNDEVIGNET
                     RVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGERIGQ
                     GKDNAREFLRENPEMAREIENRIRESLGVNAMADTIAPGVAEVADEEE"
BASE COUNT          428 a          756 c          621 g          572 t
ORIGIN      
        1 ggcgatttgt ttcgcgtttg tttcgatagg gccgggggcg gtgggggatt ccgctcagcg
       61 tcggggttgg ggtcatagcg ccaaaataac gccgacgcct attcgtcgat aaagtcgtcg
      121 tcgcccattt tcagcacttt cacgatagtc ccgccgttga accctcgcgt ggcgagaaag
      181 cgcgcttgtt tcgcgcgttc ggccggcgtt gtcggcggtt cgccgaattt cttgctccag
      241 acctcgcggg cacgagtgag ctcggttttt ttcagctcag tgccagcatc ctgaatcagc
      301 gtttcgtcga tgccgttacg cttcaactca tgaacgatcc ggctcgtgcc aagacgagtg
      361 ccccgccgat gaacaacgct ctccacaaat cgctcattcg ataaccatcc ttcccgttca
      421 agcgcgtcaa gcaaggtatc gagggaatcg ccttcgccga gatgcggcgt cagcttgcga
      481 gataactcgg tgcggctatg ttcacgacgc gatagataac ccagcgcacg gccgcgtaac
      541 gataattgcg gccccttgcg cttggaatcg cccgtcgccg atgcctttcc acgtgcggta
      601 gagccgcgcg tataaaccgg ttcggcgttt tggctttcgc taactgcatc cgctgccgat
      661 ggcacgcact gttcgaacga ctcgaatgga tcggcgacgt cgatgcctat ttctccaacc
      721 acgcccggag aaataacagc aggtttcgat tgcgatttcc gggcagcttt tgccggagcg
      781 gcctgtgttt gaacaagtgt ttgcgcctgt tccagcaccg cccgagcgcg cttcaggcgt
      841 tcctcggcgt cgaccggatt caatccagct gacgaatcag gctgcgcggg ttcaatttgt
      901 tgctggtcga cttgcggcgc ggctgcaata tcagcgctct cggcactttc ggccgctttc
      961 tcgtcagcag gctttgccga cttcggtgct ttgcgacggt tggtgtttcg atcggaagat
     1021 cgttcgaaaa catcttcacc gtcagcaggc tgaggtgaag atttcccacg cgaggccgga
     1081 ctagccgctt tgcgccccga caacccgcca cgtccaaatt tgctgcgatc actcgatcgc
     1141 tcgtactcag ccggggcctc tgccgacgca ctattcgaag acgaccgcgc cgacgccccg
     1201 ccgccaaacg atccgcgctt cggatacgca cgatcactcg accgttcgaa caccggctcg
     1261 ctgtcctgct gtgtggtttc atcagctgcc tgcagactcg cggcgatcgc ctcagccttg
     1321 ctgctgccag atgacaaact tgaaccaccc ggccgtccaa agctgctttt cctggcaaag
     1381 ctactgttac cgctactgct actcccagca ctcttgctgc tggaaaatcc accgccctta
     1441 ttaaacccac tacttccgct cttctcgcca gaaatcccac tgctcttcga gaagctgttt
     1501 ccaaacgaac gacgcgccga tgcagatcca tccgcaccga cgcgttcgcc tgctgctgcg
     1561 cggtatcgat cactgctacg ttcatagcga tcaacccctt cctcggcgtc gggactttcg
     1621 tcttcgtcgc ttatggactt cgagccgtcc ggatcttcct ttacgtcttg ctccgcgtca
     1681 cgatttgaat cgcgaccggt ttttgatccg aaccggctct tgctgcgcat catctttacc
     1741 gcctaaaact cattcttctt catccgccac ttcggcaaca cccggtgcga ttgtgtcggc
     1801 cattgcattg acgcccagcg actcgcgaat ccgattttcg atttcacgcg ccatttcagg
     1861 attttcacgc aggaattcgc gtgcgttgtc cttaccttgg ccaatccgct cgccgttata
     1921 gctgtaccag gcgcctgcct tgtcgacgag cttggcttgc acgcccaagt cgatgatttc
     1981 gccctgacgc gagatacctt cgccgtagag gatgtcgaag atggcttcgc ggaacggcgg
     2041 cgcaaccttg ttcttcacca ccttcacgcg ggtttcgttg ccgatcactt cgtcgttctt
     2101 cttgatcgaa ccgatacggc gaatgtccag gcggaccgat gcgtagaact tcagcgcgtt
     2161 accacccgtg gtggtttccg gattgccgaa catcacgcca atcttcatgc ggatctggtt
     2221 gatgaagatc accaggcagt tcgtacgctt gattgtgccg gtcagcttgc gcagcgcctg
     2281 cgacatcaaa cgtgcttgca aaccaggcaa cgagtcgccc atttcgcctt cgatttcagc
     2341 cttcggcacc agtgccgcga ccgagtcgat cacgatc
//
LOCUS       DATGBK010000562         2301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_238329, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000562 DATGBK010000000
VERSION     DATGBK010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238329"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VKJ77_08040"
     CDS             complement(<1..508)
                     /locus_tag="VKJ77_08040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004542684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HMC45257.1"
                     /translation="MSIEREIKLALPTSEHSEIAKDLTQRTGQEGRRIQLTNVYFDTP
                     DRALAKAKSAVRLRGTPDQWLQTYKTAGESTGGLHNRHEWEQPVAGQALEIPALLEIC
                     DDDHAASALSDAAPELVALFRTDFSRVIWDVEIDGAKIEAALDLGEVVTDVDGERRTT
                     PISELELEL"
     gene            complement(530..1315)
                     /gene="trpC"
                     /locus_tag="VKJ77_08045"
     CDS             complement(530..1315)
                     /gene="trpC"
                     /locus_tag="VKJ77_08045"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HMC45258.1"
                     /translation="MSDILDRIIEVKRGEVRIAQESVSLEELRLQASTRDSRDFVGAL
                     RAKHAAGKPAIIAEVKKASPSKGVLRENFVPADIAKSYEQGGAACLSVLTDVQFFKGS
                     VAYLEEARAACSLPVLRKDFIVDAYQILEARAMGADCILLIAAVLQPLQMRDLEAYAH
                     SLGLAVLVEVHDRDELEQSLTLKTPLIGVNNRNLRTFETSIETTIGMLDMVPEDRIVV
                     TESGILSRVDVDRLRANDVQTFLVGEAFMRADDPGTELARMFF"
     gene            complement(1328..>2301)
                     /gene="trpD"
                     /locus_tag="VKJ77_08050"
     CDS             complement(1328..>2301)
                     /gene="trpD"
                     /locus_tag="VKJ77_08050"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006406908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HMC45259.1"
                     /translation="DEMLHLMRMIMRGEMSPVMSAAIITGLRVKKETIGEIAAAATVM
                     REFANHVSVPDSENLVDIVGTGGDGSHTFNISTATMFVTAAAGAKVAKHGNRGVSSKS
                     GSADVLEALGVNIDLKPEQVALSIAETGMGFMFAPNHHPAMKNIAPVRRELGVRTIFN
                     ILGPLTNPAGAPNQLMGVFHEDLVGIQVRVMQRLGAKHVLVVYGKDGMDEVSLGAATV
                     VGELRNGEVREYEIHPEDFGLQMVSNRTLKVADAQESKTMLLGALNNKPCVAREIVTL
                     NAGTALYAANVVESIEAGMVLAKEVIASGQAREKVDELVRFTQQFAK"
BASE COUNT          411 a          747 c          647 g          496 t
ORIGIN      
        1 tcagctcgag ttcgagttcg ctgatcggtg tagtgcggcg ctcgccgtcc acgtcagtca
       61 ccacttcgcc cagatccagc gccgcttcga ttttcgcccc gtcaatctcg acgtcccaga
      121 tcacgcgcga gaaatcggtg cggaacagcg cgaccaattc gggcgcggcg tcgctgagtg
      181 cgctggcggc gtggtcgtcg tcgcagattt caagcagggc ggggatttcc agcgcttggc
      241 cggctacggg ctgctcccac tcatgccggt tgtgcaagcc gccggtcgac tctcccgccg
      301 tcttgtacgt ttgcaaccat tgatccggtg taccgcgcag acgcaccgca cttttcgcct
      361 tggcgagcgc acggtcaggg gtatcgaagt agacgttggt gagctggatc ctgcgacctt
      421 cctgaccggt gcgttgcgtc aggtccttcg ctatctcgct gtgttccgac gtaggcagcg
      481 ccagtttgat ctcgcgttca atactcaaaa taaactccgt gcaacagcgt cagaagaaca
      541 ttcgcgccag ttcggtaccc gggtcgtcgg cgcgcatgaa tgcctcgccg accaggaacg
      601 tttgtacgtc attggcgcgc agccggtcga catcgacacg gctcagaatg cccgattcgg
      661 tcaccactat acggtcttcg ggaaccatgt ccagcatgcc gatcgtcgtt tcaatcgacg
      721 tctcgaacgt ccggagattg cgattattaa cgccgatcaa cggcgtcttc aaggtaagcg
      781 attgctcgag ttcgtcacga tcgtgaactt ccacgagcac tgccagtccg agcgagtgcg
      841 cgtacgcttc cagatcacgc atttgcaagg gctggagcac ggcggcgatc aagaggatgc
      901 agtcggcgcc catcgcacgg gcttccagga tctgataagc atcgacaatg aagtccttgc
      961 gcagaaccgg caggctgcaa gcggcgcgcg cttcttcgag atacgccacg ctgcccttga
     1021 agaactgcac gtcggtcagc actgacaaac acgcggcacc gccttgttcg tacgactttg
     1081 cgatatcggc ggggacgaag ttctcgcgca gcactccctt cgacgggctc gctttcttca
     1141 cttccgcgat gatcgcgggc ttccccgcgg cgtgcttcgc gcgcaatgcg ccgacgaagt
     1201 cgcgcgagtc gcgcgtgctc gcctgcaaac gcaattcctc tagcgacaca ctttcctgcg
     1261 cgatgcgaac ttcgccgcgt ttgacttcga tgatgcggtc gagaatgtca ctcatgtcct
     1321 ggcctcttta ttttgcgaat tgctgcgtga agcgcacgag ttcatcgacc ttttcgcgcg
     1381 cttgtccgct cgcgatcacc tctttcgcga ggaccatgcc ggcctcgatc gattcgacca
     1441 cgttcgcggc atacagcgcc gtgcctgcgt tcagcgtcac gatttcacgc gcgacgcacg
     1501 gcttgttgtt cagcgcgccg agcagcatgg tcttcgattc ctgcgcgtcg gccactttca
     1561 gcgtccggtt tgacaccatc tgcaggccga aatcttccgg atgaatctca tactcgcgca
     1621 cttctccgtt gcgcagctcg cctaccaccg ttgccgcacc cagcgatact tcgtccatgc
     1681 cgtccttgcc gtacaccacc agcacgtgct tcgcgccgag acgctgcatg acgcgaacct
     1741 ggatgcccac gagatcctca tggaacacgc ccatcaattg attcggcgcg ccggccgggt
     1801 tggtcaatgg accgaggatg ttgaaaatcg tccgcacgcc gagttcacga cgcaccggcg
     1861 cgatgttttt catggccgga tggtgattcg gcgcgaacat gaagcccatg cccgtttcgg
     1921 cgatggataa cgcgacctgt tccggcttca gatcgatatt cacgcccagc gcttcaagca
     1981 cgtccgcgct gcccgattta ctcgataccc cgcgattgcc gtgcttcgcg accttcgcgc
     2041 ctgcggccgc cgtgacaaac atggtggccg tcgagatgtt gaaggtatgc gagccgtcgc
     2101 caccggtgcc cacgatatcc acaagattct cgctatccgg cacgctcacg tgattcgcaa
     2161 actcgcgcat cacggtggcc gctgcggcga tctcgccgat ggtctctttc ttcacgcgca
     2221 aacccgtgat gatcgcggcg gacatcaccg gcgacatctc gccgcgcatg atcatgcgca
     2281 tcaggtgcag catttcgtcg t
//
LOCUS       DATGBK010000563         3021 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_76361, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000563 DATGBK010000000
VERSION     DATGBK010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3021
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76361"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..1008
                     /gene="pcaQ"
                     /locus_tag="VKJ77_08055"
     CDS             70..1008
                     /gene="pcaQ"
                     /locus_tag="VKJ77_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001228 - DNA-binding transcription
                     activator activity, RNA polymerase II-specific [Evidence
                     IEA];
                     GO_process: GO:0019619 - 3,4-dihydroxybenzoate catabolic
                     process [Evidence IEA];
                     GO_process: GO:0045893 - positive regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pca operon transcription factor PcaQ"
                     /protein_id="HMC45260.1"
                     /translation="MTSGRIKFRHLQCFLAVTQFGSVQRAADSLSITQPAVSKTIGEL
                     ESILAVRLFERGRRGAAPTREGRLFAPHAAACVGALREGVDELSRHGVEMPGTVALGV
                     LPTVAPALLPPTLAAFRAHWPDVSVRVWTGSNSQLLERLKSADTDLVIGRLSEPDGMV
                     GMTFEQLYREPLTVVVRSDHALVHESNITASVLARFPVVVPPFVTLIRQSAESVLTAF
                     GAQALSSLIETLSVSLGRALALHNDAVWFVPSSVVEHDIELKLLARLPMPFASADEPI
                     GLILRHDRVRSPALDSLIDAIREAGRQREAVRIGMK"
     gene            1323..1691
                     /locus_tag="VKJ77_08060"
     CDS             1323..1691
                     /locus_tag="VKJ77_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC45261.1"
                     /translation="MKTVLLVDDDPATLEAWTLCMQSADCTVLSAFDGNGALVLLGEH
                     SVDIVVSDWMMPGLGGALLCQTMKTNSALAHIPFLMISGHPHPPAFVHYDGYLQKPVE
                     TEALLSAVDRLCAAKRRRPF"
     gene            complement(1767..2480)
                     /locus_tag="VKJ77_08065"
     CDS             complement(1767..2480)
                     /locus_tag="VKJ77_08065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HMC45262.1"
                     /translation="MHRTFVKWLFATYLLGSGTVWSILILPLFPFVGRRGRYWLAKQW
                     CRAMVSMMRVITGVSCSVEGLENLPNEPFIMLCRHESTWETLAFMALFPRRISFVFKS
                     ELKRIPFFGWVLKGLDMVSLDRGSPRQAHQAVTRECAEKLALGDVVVIFPEGTRVAHD
                     APLKLASGGVRLACSTQVPAVPVVHNAGKYWPAKGWPDQPGHIRVIVLPPLPADCVVP
                     QELNRLAQERMEKEMARLA"
     gene            2735..>3021
                     /locus_tag="VKJ77_08070"
     CDS             2735..>3021
                     /locus_tag="VKJ77_08070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC45263.1"
                     /translation="MTDEANSEVKGELTNEVAGKPAAEPVPAYEDGLLDVGDGHAVYW
                     RAQGPKDAPVMLIVHGGPGGAMNLKWADVLDASKWRMVFFDQRGCGKSTPFG"
BASE COUNT          579 a          932 c          948 g          562 t
ORIGIN      
        1 gaccccactt cgcccgccgc acccgttccg gcgggtgcgc cgaataagcc aatcacaccc
       61 ctcgccaacc tgaccagcgg ccggatcaag tttcggcatc tgcaatgctt tctggcggtg
      121 acgcagttcg gcagcgtgca gcgcgccgcc gacagcctct cgatcacgca gccggcggta
      181 tcgaagacga ttggcgagct ggaatccatt ttggccgtac ggctgtttga acgtggccgc
      241 cgaggcgccg cgcccacgcg tgaggggaga ctgttcgcgc cgcacgctgc agcctgcgta
      301 ggggctttgc gcgaaggcgt ggatgagttg tcgcgacatg gcgtcgagat gcctggcacg
      361 gtcgcgctgg gcgtcctgcc gacggtcgca cccgccttgc tgccgcccac gcttgccgcg
      421 tttcgggcgc actggccgga tgtctccgtg cgggtatgga ccgggtcaaa ctcgcagttg
      481 ctcgaacgcc tgaaatccgc cgataccgac ctggtcatcg gccgactgtc cgaacccgac
      541 ggcatggtgg ggatgacctt cgagcagttg taccgtgagc cgttgacggt cgtcgtacgt
      601 agcgatcatg cactcgtgca cgaaagcaac atcacggcgt cggtgcttgc ccgctttccg
      661 gtggtcgtgc cgccatttgt gacgttgatc cgccagtccg ctgaaagcgt gttgaccgcg
      721 ttcggcgcgc aggcgctgag ttcgctgatc gaaaccttgt cggtgtcgct cggacgcgct
      781 cttgcattgc acaacgacgc ggtgtggttc gtcccgtcga gcgtggtgga acatgacatc
      841 gaattgaagc tgcttgcccg cttgcccatg ccctttgcga gcgccgatga acccatcggc
      901 ctgatactcc gtcatgaccg cgttcgctcg cctgcgctgg acagcctgat cgatgcaatc
      961 cgggaagccg gaaggcagcg tgaggcagtt cgtatcggta tgaaatagct tgtagggagg
     1021 cttgccgcag gcacttgtta ccgcaaatgc gggaccggca aaaccccatt agcatacgtg
     1081 cgataaaagc tatataagtg ggccagacgg cgggccgcgc agcgtttaag gcacgtgcaa
     1141 tgctgccgcg caaagcaggc tcgaagcgga tttgaagcgg accacgcgag cagagtgtga
     1201 gcggcgcaaa caaccatact gtaagcaagc gcaacagaat ttgcgtgcaa ccaaagttcg
     1261 ttttgtgctg tctgactccg caactcttcc atcaccggac gcccatcaaa gccgccagca
     1321 agatgaaaac cgtattgctc gtcgacgacg accccgccac cctcgaagcc tggaccctgt
     1381 gcatgcagtc ggcggactgc acggtgctgt ccgcgttcga cggcaacggt gcacttgtat
     1441 tgttgggcga gcacagcgtg gatatcgtgg tgtcggactg gatgatgccg gggctcggcg
     1501 gcgcgctgtt atgccagacg atgaagacca attcggccct tgcacacatt cccttcctga
     1561 tgatctcggg ccatccgcac ccgccggctt tcgttcacta cgacggctat ttacagaagc
     1621 ccgtcgagac ggaagcgttg ttgtcggcgg tggaccggct gtgcgccgcg aagcgccgcc
     1681 ggccgttctg atccaacgca cccaaccgtt gcttaccacg tgtcactgcg cgtagcctgc
     1741 atgactgatg cggctcaggc tcaggctcag gcgagccggg ccatttcctt ttccatccgt
     1801 tcttgcgcaa gccggttcaa ctcttgcggc accacgcaat cggcgggcaa cggtggcagc
     1861 acgatcacgc ggatatgtcc gggctggtcg ggccagcctt ttgccggcca gtatttgccg
     1921 gcgttatgca cgaccggcac ggcgggcact tgtgtggaac acgcaagtct cacgccaccc
     1981 gaagccagct tgagcggcgc atcgtgcgct acccgcgtgc cttccggaaa gatcaccacc
     2041 acgtcgccca gtgcgagctt ttccgcgcat tcgcgcgtga cggcctgatg cgcctgacga
     2101 ggtgaaccgc gatccaggct gaccatgtcc aggcccttca agacccagcc gaagaacggg
     2161 atgcgcttga gctcgctctt gaagacgaag ctgatgcggc gcggaaacag cgccatgaac
     2221 gcgagcgttt cccatgtcga ctcgtgccgg cacagcatga tgaacggctc attcgggagg
     2281 ttctccagtc cctcgaccga acacgacacg cccgtgatca cgcgcatcat gctgaccatc
     2341 gcgcggcacc attgtttggc gagccaataa cggccgcggc ggccgacgaa cggaaacaga
     2401 ggcagaatca ggatcgacca caccgtaccg ctgccaagca ggtaggtcgc gaatagccac
     2461 ttgacgaagg ttcgatgcat taagaaatgg atggtggtaa aaatggggcg aaagggctgc
     2521 ggcgggttgc aacgcgtctt ggggaggggt gacccggccc gacgtttgag cccggcgtgc
     2581 gaaacccgaa ggatagcctg tgcggcggcg catgtcccaa atccggtccc aaactcagtc
     2641 ctgggctcgg ttcacggtgc accccggagt gcgccccata ctgcccgccc gataatagtc
     2701 agagaggcac tcgtctctct ttaacggagt tgcaatgacg gacgaagcaa acagcgaagt
     2761 gaagggcgag ttgacgaatg aagtagcggg taagccagcc gccgagccgg tgcctgcgta
     2821 cgaggacggc ctgctcgatg tcggcgatgg ccacgccgtt tactggcgtg cgcaagggcc
     2881 caaggacgcc cccgtgatgc tgattgtcca cggcggccct ggcggcgcaa tgaacctgaa
     2941 gtgggcagat gtactcgatg cgtccaagtg gcgcatggtt ttcttcgatc aacgcggctg
     3001 cggcaaatcc acgccgttcg g
//
LOCUS       DATGBK010000564         1997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_307919, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000564 DATGBK010000000
VERSION     DATGBK010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307919"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..607)
                     /locus_tag="VKJ77_08075"
     CDS             complement(<1..607)
                     /locus_tag="VKJ77_08075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012352066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC45264.1"
                     /translation="MHVLVLGAGVTGLATAWYLREDGHTVTVVERNEDVALESSFANG
                     GQLSYSYVAPLAGPGVLSKLPFWLLRGDSPIRFRPRLDPDQWRWLARFVCACTQRTSE
                     LSTRRLLALSFLSRDLMQQLQASEPGLHFSHSNAGKLVVHRKRASFDAALRLLDYQRS
                     LGCEQQALNTRECVQKEPALAHLAGQLQGGIFTPSEDSGDCY"
     gene            complement(724..1641)
                     /locus_tag="VKJ77_08080"
     CDS             complement(724..1641)
                     /locus_tag="VKJ77_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013232609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45265.1"
                     /translation="MRLRHIEIFSAIMLTGSANGAAKLLHISQPAVSKMLQHAEQSAG
                     FALFLRSKGKLVPTPEALRLREELGPFDEQLKRIRRLVTSLAHGADRPLRVAATPALA
                     HHALPHVMARWCRAFPQSKCELSVAHTREIEHALLFDEIELGLTMRPVSHPNLVATPV
                     CESTLCAIAPAGWWTDALLDQPLTADDLAGQPLITIDPDDYLGSILSAWLADAVEPPV
                     SNLSVQTYPLGKSLVQERIGIAIVDSFTANYPLHHPDIQIRPLAIDETLQVYAVTEHS
                     RPPPQSAERLIQFLRDDAPGSSTGESSRS"
BASE COUNT          375 a          575 c          655 g          392 t
ORIGIN      
        1 ggtaacaatc gccgctgtct tcgctgggcg tgaagatgcc cccttgcaac tgcccggcga
       61 gatgcgccag tgccggttcc ttctgcacgc actcgcgagt attgagggct tgctgttcgc
      121 aaccgagcga gcgttggtaa tcgagcaggc gcaacgcggc gtcgaacgag gcgcgcttgc
      181 ggtgcaccac cagcttgccg gcattcgaat ggctgaagtg caagcctggt tcactggcct
      241 gtagttgctg catcaagtca cggcttaaga acgagagcgc taacaagcgc cgggtggaca
      301 actcgcttgt gcgctgcgtg catgcgcaga caaaccgcgc aagccaacgc cactggtctg
      361 gatcgaggcg cggtcgaaag cggatcggcg agtcaccgcg taacagccag aacggcagct
      421 ttgacagtac ccccggaccg gcgagtggcg cgacatagct atacgaaagc tgtccaccgt
      481 tagcaaagct ggattcgagt gcaacgtcct cgttgcgttc tacgacggtg acggtgtgac
      541 cgtcctcccg cagataccag gccgtggcca gaccggtgac tccggctccg agtacgagca
      601 catgcatggg atgggtcgat ggttgattga gcgagaagtc attgttctgc agctcgcaca
      661 cggcgtccaa taccgaccag cactcgcgct atagccgtcg gttatatcgc ttgcaacggg
      721 catttagctc cgcgacgact cgccggtcga agacccgggc gcatcgtcac gcaggaactg
      781 gatgagccgc tccgctgatt gcggcggcgg tcgcgagtgt tccgtcaccg cataaacctg
      841 cagggtctcg tcgatcgcga gcggccggat ctggatgtcc ggatgatgca ggggataatt
      901 cgccgtgaac gaatcgacta tagcgatgcc gatgcgctcc tgcaccagcg acttcccgag
      961 cggataagtc tgcaccgaca gattgctgac ggggggctcg acagcgtcag cgagccacgc
     1021 ggagaggatt gacccgaggt agtcgtctgg atcgatagtg atcagcggtt gccccgccag
     1081 atcgtctgct gtcagcggct ggtcaagcag ggcgtccgtc caccagccag ccggcgcaat
     1141 ggcgcacagc gtgctttcgc ataccggcgt ggcaaccagg ttgggatggg agacgggccg
     1201 catggtcagc ccgagttcaa tctcgtcgaa cagcagtgcg tgttcgatct cgcgagtgtg
     1261 ggcgacgctc agttcgcact ttgactgcgg gaacgcgcgg caccagcgcg ccatgacgtg
     1321 cggcaatgca tggtgtgcga gagcgggcgt agcggcgacc cgtaacgggc ggtcagcgcc
     1381 gtgcgcaagg ctcgtgacga ggcgccggat ccgcttcagt tgttcatcga acgggccgag
     1441 ttcttcgcgc agccgcaacg cctcgggggt gggcaccagc ttgcccttgc tgcgcaggaa
     1501 cagcgcgaaa ccggcggact gctcggcatg ctgcaacatc ttgctgacag ccggctgcga
     1561 gatgtgcagg agcttggccg cgccgttggc cgagccggtc agcatgattg cgctgaagat
     1621 ttcgatatgt cgcaaacgca cctgagtctc cctggattga catcgccatg cagcttacgg
     1681 cacgcctcga tcgtttggaa caaggctctc ggcctgagct gcttacaact ccgataagcc
     1741 tcctataaca cagggttata tttggggatt ttattttcat tagacgcggt ccgcatgcgc
     1801 cctcatattc ggtctgctgg ccggtcccgc gccgcggaca ggcgaagggg ttatcgagtg
     1861 gggttatcaa gtacgtagcg ctaacgtggt gtggagggtt tatggagtct gcggggcctg
     1921 ctggatctgc ggggtatgtg ttttcccgga cgcaaaaaat ggtgtgtctg tcgggtctgt
     1981 tcctcgcgtg ggcagtc
//
LOCUS       DATGBK010000565         3029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_238387, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000565 DATGBK010000000
VERSION     DATGBK010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3029
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238387"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..79)
                     /locus_tag="VKJ77_08085"
     CDS             complement(<1..79)
                     /locus_tag="VKJ77_08085"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006756005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HMC45266.1"
                     /translation="MSRLLVLHGPNLNLLGTREPHVYGRV"
     gene            complement(286..834)
                     /locus_tag="VKJ77_08090"
                     /pseudo
     CDS             complement(286..834)
                     /locus_tag="VKJ77_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342901.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
     gene            complement(831..1481)
                     /locus_tag="VKJ77_08095"
     CDS             complement(831..1481)
                     /locus_tag="VKJ77_08095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--alanine ligase"
                     /protein_id="HMC45267.1"
                     /translation="MIRKSHFDPQRVREEIAIAAARLIAEDGLDYSTAKRKAARQVVG
                     ETRIGGEWLPDNGQIEDEIREYQAIFQSESQPAVLRRMREVALEWMQRLQPFNPYLTG
                     AVLNGTAGEHSDIHLQCFCDNPKEVAIYLLNANVQYDVSETRHFAGRGYVETLSFLMR
                     PSRDEEPMGIHVALYDTNDLRGAVRADGRGKLARASAAAVRALLDEPPAPTPAISL"
     gene            1652..>3029
                     /gene="mpl"
                     /locus_tag="VKJ77_08100"
     CDS             1652..>3029
                     /gene="mpl"
                     /locus_tag="VKJ77_08100"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HMC45268.1"
                     /translation="MHIHILGICGTFMGGLAVLAREAGHRVTGCDAGVYPPMSTQLEA
                     QGIELIEGYGVEQIALEPDLYVVGNVVTRGNPLMEIILDRGLPYTSGPQWLGEHVLNG
                     KWVLAVAGTHGKTTTSSMLTWLLEDAGMNPGFLIGGVPLNFGISARLTDSSFFVIEAD
                     EYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLGAIETQFHHLVRTVPGVGRIV
                     TNGREAALERVLTRGCWSGVERFGVQGGWDALPASDGVAVDEQFAMYWEGERQGVVDW
                     QVQGEHNRMNALAAIAAARSVGVPPAQATQSLSTFRNVKRRMEVKGSVDGVTVYDDFA
                     HHPTAIETTVAGLRTRIGANSRILAVLEPRSNTMKLGTMKAQLPASLADADLVFGYGA
                     HEGRDKLGWDLQAALAPLGNKAQAFSDLAALVKSIAAAARPGDHVLVMSNGGFGGVHQ
                     KLLDALSAR"
BASE COUNT          557 a          889 c          957 g          626 t
ORIGIN      
        1 ttacccgacc gtagacatgc ggttcgcggg tgccgagcag attaagattt gggccgtgca
       61 ggaccagcaa tcgtgacata gtggctttgg tttgtgcgga gttgggcgca ctttagcgcc
      121 ctttagagaa ttttgtctag ttttacgact cgcccaaccg acggttcagg ggacgaggca
      181 ggtcggatac ccgcattttg cacgtatttt cgtcgaaagt ttctggaaat gacggcatct
      241 ccccgcgatc gatatcgatt tgcggaggat caaacggccg tcgtataagg cgtcgagcgt
      301 cgctttcagc tcttttggat caacttcgcc gagttttgtc gaacgaatca cacctttcgc
      361 gtctattacg acggtgaagg gcagcgcgcc ggcgttattg ccgaagctgc gggcaagatc
      421 ggcgccgccg aagcccgcga tatagatcgg gtaatcgacg ggtaccttct gaagaaacgc
      481 gttgacgttt ttctcggaat cgacgccgag accaatgaac gtgatgcctt tcttctcata
      541 ttcccgatga agcgccgcga gtgtcggcat ttccttcacg caggggccgc accacgacgc
      601 ccagaagttg accactacgg gtttgccttt gaacgaggca agtgcttgct gcgtacctgc
      661 agcgttttgc agctgcgctt tccagagatc atcgacggcg ttgccgcttg ctttcgacgt
      721 ggcttctgct gcctggctcg tttcgccgcc cagcatcata tggctggcgt agaaaccgcc
      781 accggttgcc gcaatggcga taacgagggc agcaacaatg cgcatggaat tcatagagag
      841 atagccggtg tgggggcggg aggctcgtcg agcaatgcgc gcacggcggc ggcgcttgca
      901 cgtgcaagct tgccccggcc gtccgcgcgc acggcgccgc gcaggtcgtt ggtgtcgtag
      961 agcgcgacgt gaatacccat gggttcttcg tcgcgcgagg ggcgcatcag gaagctcagg
     1021 gtttcgacgt aaccgcggcc ggcaaagtgc cgcgtctccg atacgtcgta ttgaacgttc
     1081 gcgttcagca ggtaaatcgc gacttccttg gggttatcgc agaagcattg caggtggatg
     1141 tcggagtgct cgcctgctgt gccgttcagt acggcgccgg tcaggtaagg attgaacggc
     1201 tggagccgtt gcatccattc gagtgcgact tcgcgcatcc ggcgtaagac ggctggctgg
     1261 ctttcgctct ggaagatcgc ctggtattcg cggatttcgt cttcgatctg accgttatcc
     1321 ggaagccatt cgccgccaat gcgtgtttcg ccgacgacct ggcgcgcggc tttgcgcttc
     1381 gcggtggaat agtcgaggcc gtcttcggcg atcagccgcg ccgccgcaat ggcgatttct
     1441 tcgcgcacgc gttgcggatc gaaatgtgat ttgcgaatca tggcggaatg ataccggaga
     1501 taggttttcg atcgcatgcg gggggcgggg cggggcgacg gtcagcaaaa atctgtgtct
     1561 atccgtcggt tacaatgtac cgctacgggc ggcggaatac ctcgctcatt cctcccgtgc
     1621 caacggccct cccgccacga acacacgctt tatgcacatt cacatcctcg gtatctgcgg
     1681 cacattcatg ggtggtctcg cggtcctcgc ccgcgaagcg ggtcatcgcg tcaccggctg
     1741 cgacgcgggc gtctatccgc caatgagcac ccagctcgag gcgcagggca tcgagttgat
     1801 cgaaggttac ggcgtggagc aaatcgcgct tgagccggat ctgtatgtag tgggcaatgt
     1861 cgttacgcgc ggcaatccgc taatggaaat catcctcgat cgcggcttgc cctacacgtc
     1921 cggtccgcag tggctcggcg aacacgtgct caacggtaaa tgggtgctcg cggtcgccgg
     1981 tacgcacggc aagaccacga ccagttccat gctgacctgg ctgctcgaag atgccggcat
     2041 gaatccgggc ttcctgatcg gcggcgtgcc cctgaatttc ggcatctcgg cacggctgac
     2101 ggattcaagc tttttcgtca tcgaagccga cgaatacgat acggcctttt tcgataaacg
     2161 ctccaagttc gttcactatc gcccgcgcac ggcggtgctg aacaatctcg aattcgatca
     2221 cgccgatatc ttcccggatc ttggtgctat cgagacccag tttcatcatc tggtgcgtac
     2281 cgtgcccggc gtcggccgga tcgtgacgaa cggccgcgaa gccgcgctag agcgcgtgct
     2341 gacgcgcggc tgctggtcgg gcgtcgagcg cttcggcgtg caaggcggct gggacgcgct
     2401 gcccgcgagc gacggtgttg ccgtcgatga gcagttcgcc atgtactggg aaggcgagcg
     2461 ccagggcgtg gtcgactggc aagtgcaggg cgagcacaat cgaatgaatg cgctcgcggc
     2521 gatcgcggcg gcgcgttcag taggcgttcc gcccgcgcag gcaacacagt cgctgagcac
     2581 gttccggaac gtgaaacgcc ggatggaagt gaagggcagc gtggacggcg tgaccgtcta
     2641 cgacgacttc gcgcatcacc ccaccgcgat cgaaacaaca gtagcgggct tgcggacgcg
     2701 tatcggcgca aatagtcgca tcctcgccgt cctcgaacca cgttcgaaca cgatgaaact
     2761 cggcacgatg aaggcgcaat tgccggccag tctcgccgac gccgacctcg ttttcggcta
     2821 cggcgcgcat gaaggccgcg acaagctcgg ctgggatctg caagcggctc tggcgccgct
     2881 cggcaataaa gcccaggcgt tcagcgacct tgcagcgctc gtcaaatcga tcgccgccgc
     2941 cgcgcgtcct ggcgaccacg tgctcgtgat gagcaacggc ggtttcggcg gcgtgcatca
     3001 gaagctgctc gatgcactct ccgcgcggc
//
LOCUS       DATGBK010000566         1662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_192573, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000566 DATGBK010000000
VERSION     DATGBK010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192573"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VKJ77_08105"
     CDS             <1..466
                     /locus_tag="VKJ77_08105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HMC45269.1"
                     /translation="AAEANIMCDPDAADLVLGAAWPVTLVGLDVTQNTLMSNEWLSSI
                     RNGAGEAGRFVWDVSRHYAQFHQDSAGLEGIYVHDASAVAYVLAPHLYTVRKGAVRVL
                     TSGIATGQTIQKPSTMRVPAPDWDDRPAQSVCIGVDAAGMLELYKNTLFKAL"
     gene            complement(453..1160)
                     /locus_tag="VKJ77_08110"
     CDS             complement(453..1160)
                     /locus_tag="VKJ77_08110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC45270.1"
                     /translation="MTALLTTIDVETAPNPEFAVILMHGLGADANDFIPLVPELRLGD
                     LAAVRFVFPNATEMPVTGNNGYVMRAWYDILSFEGVNRRVDEAGLKASCERIRALIAR
                     ENERGIPTSKIFLAGFSQGGAMTYTAGLTHPEKLAVLIVLSGYVPSPGLIDAAFSEAN
                     RDTPIFAAHGTQDPVLSIELATQGRDFALAHGCKLEWHTYPMPHSVCGEEVEALRVWL
                     GARLAERLAEDSPLKAP"
     gene            complement(1191..1580)
                     /locus_tag="VKJ77_08115"
     CDS             complement(1191..1580)
                     /locus_tag="VKJ77_08115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HMC45271.1"
                     /translation="MTTELHILAWTLVLALIQVLLPSVVRSRETGLGHNGGPRDQPGP
                     PVGKVTGRLMRAQNNLFETLPVFAIAILIAHMAGREGTLTLYGAWLYIVARVIYLPLY
                     AGGIPFLRSLVWMVSLFGIILVLVPII"
BASE COUNT          351 a          489 c          511 g          311 t
ORIGIN      
        1 ggcggccgaa gcgaacatca tgtgcgaccc cgatgcagcc gatctcgtgc tcggcgcagc
       61 gtggccggtc acacttgtcg gcctcgacgt cacgcaaaat acgctcatgt cgaacgaatg
      121 gctgtcatcg attcgcaatg gcgcgggcga ggccggacgt ttcgtgtggg acgtatcacg
      181 acattacgcg cagttccacc aggacagcgc cggactcgaa ggtatctatg tccacgatgc
      241 atcggcggtg gcctatgtgc tggcgccaca tctttatacg gtgaggaagg gtgccgtgcg
      301 ggtgctgacc agcggtatcg caaccggtca gacgatacaa aaaccctcga ccatgcgcgt
      361 tcccgcgccg gactgggacg accgtccggc gcagtcggtc tgcatcggcg tggatgcggc
      421 cggcatgctc gagttgtata aaaatacctt gttcaaggcg ctttaagcgg cgagtcttcg
      481 gcaagccttt cggcgagcct tgcgcctaac caaacgcgca aggcctcgac ttcctcgcca
      541 cagaccgagt gcggcatcgg gtaggtatgc cattccagct tgcaaccgtg cgcgagcgca
      601 aagtcgcggc cttgagtggc cagttcaatc gatagcacag ggtcttgcgt gccatgtgca
      661 gcgaagatag gcgtatcgcg attcgcttcg ctgaacgcag catcgatcaa tccaggcgac
      721 ggcacgtacc cggacaacac aatcagtacc gccagtttct cgggatgggt gagccccgca
      781 gtgtaggtca tggctccgcc ttgcgaaaac cccgccagga atatcttcga agtcggaata
      841 ccacgctcgt tctcgcgcgc gatcagtgcg cgaatccgtt cgcacgatgc cttcaacccg
      901 gcttcatcga cccggcggtt cacgccttcg aacgacagaa tgtcgtacca cgcgcgcatc
      961 acgtatccgt tattgccggt aaccggcatt tcggtggcgt tcggaaaaac gaaacgcacg
     1021 gcggccaggt cgcccaggcg cagctcgggc accagcggga tgaagtcgtt ggcgtcggct
     1081 cccagcccgt gcatcaggat cacggcgaac tcgggattcg gcgcggtttc cacgtcgatg
     1141 gtggtgagca aagcggtcat tgactggact ccggtttcag atgattgatt tcagataata
     1201 gggacgagaa caagaatgat gccgaaaagc gagaccatcc atacgagcga gcgcaggaac
     1261 ggaattcctc ccgcatacaa aggcaggtag atcacgcgcg cgacaatgta caaccacgcg
     1321 ccgtaaagcg tcagcgtgcc ttcgcggccg gccatgtgcg cgatcaggat ggcgatggcg
     1381 aacacgggca aggtctcgaa caggttgttc tgggcacgca tcagacggcc ggttaccttg
     1441 ccgaccggcg gccccggctg gtcgcgaggt ccgccgttat gtcccaggcc cgtttcgcgg
     1501 ctgcgcacca ccgacggcag cagcacttga atgagggcaa gcacaagcgt ccacgcgagg
     1561 atatgaagtt ctgttgtcat gggaaatgtc agttgaattt gggggcgttg cgcgaaaccg
     1621 gaatcatcat gccatcattg agtctccaag tagccctggg gt
//
LOCUS       DATGBK010000567         1626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_215429, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000567 DATGBK010000000
VERSION     DATGBK010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215429"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(408..851)
                     /locus_tag="VKJ77_08120"
     CDS             complement(408..851)
                     /locus_tag="VKJ77_08120"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HMC45272.1"
                     /translation="MAEIVDIARGALNAQPFSALLGTKLMQVDSSSLTLCLTIRDELR
                     QQHGFVHGGVVSYLVDNALTFAGALRLGPKVVTGEYKINYLRPAVSGTLMARARVVYA
                     GMTQATCQCDVYVTDGGAERLVAVAQGTIHRISEMAAELEPAFNE"
     gene            complement(1149..>1626)
                     /locus_tag="VKJ77_08125"
     CDS             complement(1149..>1626)
                     /locus_tag="VKJ77_08125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HMC45273.1"
                     /translation="QAFVHEETGCIAELTIGSANNWLEPGHQFEWLFLVEASRHPAFD
                     AAGLNRALVRGFNFVQQFGVDPVTGGVAASLNEQGGVIDSTQRIWAQTEYLRALATHA
                     DESVRAQLAAQIVRFAERFIRPHGWIESQSAEGVVMRPELPSTTPYHLATAYAALP"
BASE COUNT          359 a          508 c          457 g          302 t
ORIGIN      
        1 ctcgggattc agggcctggg cgagcagcag caacgcacgg tcgacgcgaa gtaggccctt
       61 tgaggtaagc ctctcgaagt aagccgctta tcgcgacgca accaggcaag ccggcgagca
      121 aattaacacc ggagccggta agctaaaaaa agtcgttcca gcgtcagttg gaacgacctt
      181 ttttgcgaca gcttgaagtc gatggttcag cggttccggc cggagggatg gttcgatgtc
      241 gtcattcgag gcgccgacgg ttcaacgtcg cgccttctcc caaaaacgcg aatgttttca
      301 tcgcattaac ctttaagcgc ataaagccgg ctcccaacac tgccgccgta aaaccgctgc
      361 atcggaaaag gcgcgaaaag tccggcaaac caacgcaccc agcccactta ctcgttaaac
      421 gccggctcaa gttccgcagc catttcgctg atccgatgaa tggttccctg tgcaaccgcg
      481 acgagccttt cggcgccccc atccgtgaca tatacatcgc attggcaggt cgcctgcgtc
      541 atgccggcat agaccacgcg cgcgcgcgcc atcaacgtgc cggagaccgc cggccgcaaa
      601 taattgatct tgtattcgcc tgtgaccact ttcggtccca ggcgcaatgc gccggcgaag
      661 gtcaacgcgt tatcgacgag ataactcact acgccgccgt gcacgaaacc gtgttgttgc
      721 cggagttcgt cgcggatggt cagacacagt gtgagactcg aggagtcgac ctgcatgagc
      781 ttcgtaccca gcaaggcgct aaacggctgc gcattcaatg cgccccgtgc gatatcgaca
      841 atttcggcca ttcggacact cctacacttg gtttcggtcc agtcagcatg agtcccacaa
      901 tccgcatcgg ggcaggagcc ttcgtcgcgg tcctgcacaa gactgtaggt agcgcatggt
      961 cactccgcaa ggacgatctc aaaatcgcgg acaaattacc gggttttcac gggatttctc
     1021 agtgatttga aacgaaagcg cgcaaagcgt tcagcatcgc gccgatttct ccagccgcaa
     1081 taaaaaaacg cctcgcggct tggcgaggcg tttgaagcga gagcgccaga cacgccgggc
     1141 gccaaacgtc agggcaacgc ggcgtaggcg gtggcaaggt ggtacggcgt agtcgacggc
     1201 aattccgggc gcatgaccac gccttctgcc gactggctct cgatccaccc gtgcggccga
     1261 ataaaacgtt cggcaaaacg cacgatctgc gccgccagtt gtgcgcgcac ggactcgtcc
     1321 gcatgcgtcg caagggcccg caaatattcg gtctgagccc agatgcgctg cgtcgaatcg
     1381 atcacgccgc cctgttcgtt cagcgacgcc gccacgccac cagtcacagg atcaactccg
     1441 aattgctgca cgaaattgaa tccgcggact agcgcccggt tcaggcccgc tgcatcgaaa
     1501 gccgggtgcc ggctggcctc gacgagaaac agccactcga actggtgccc cggctccagc
     1561 cagttattgg cgctgccgat tgtcaattcg gcgatacagc cggtttcctc gtgcacgaaa
     1621 gcctgc
//
LOCUS       DATGBK010000568         1694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_30564, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000568 DATGBK010000000
VERSION     DATGBK010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30564"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(21..998)
                     /gene="corA"
                     /locus_tag="VKJ77_08130"
     CDS             complement(21..998)
                     /gene="corA"
                     /locus_tag="VKJ77_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HMC45274.1"
                     /translation="MLVNCAAYQKGRKLADVAIDDISAYRDVPDCFVWVALKDPGPGE
                     LAHMAHQFGLHELAVEDAQKGHQRPKIDEYADSLFCVLHTVELDTDNELVVGEINVFV
                     GSNYVLSVRNRTSQGFQDVRKRCEREPHLLEHGPAFVMYALIDNVVDRYFPILETLGA
                     ELDELEERIFERNGSAASRVIIEDLYSLKRRLVLLQHHTAPLLEAVSKLYGGRAPGIC
                     TGMQDYFRDVYDHLLRIVKTIEGRREMIVTAIQVNLGLISLAESEVTKRLGSFAALFA
                     VPTMIAGIYGMNFRRIPELDWVYGYPAVICVMLVVDIGLYWRFRKAGWL"
     gene            complement(1184..1624)
                     /locus_tag="VKJ77_08135"
     CDS             complement(1184..1624)
                     /locus_tag="VKJ77_08135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HMC45275.1"
                     /translation="MFKKKSPGVSQAKLATLIAHDVQIAGNLEFSDGLRMDGHVKGNV
                     TGRAGEQTLLVVSDQGSITGNVIAYDIVINGTITGDVTVEHFVELQSNAHVNGNIYYQ
                     QLRMDVGASVEGKLTKRDNTLAPQAAPPRLSSEVTSDDYTHSET"
BASE COUNT          323 a          504 c          508 g          359 t
ORIGIN      
        1 cgaagcatcc attataacca tcatagccat cctgccttgc ggaaccgcca gtaaaggcca
       61 atgtccacca cgagcatcac gcaaatgacc gccggatagc catagaccca gtcgagttcc
      121 gggatgcggc ggaagttcat gccgtagatc ccggcgatca tggtgggcac ggcgaacagc
      181 gccgcaaacg agcccagccg cttggtgact tcgctttccg cgagcgaaat caggcccagg
      241 ttgacctgga tcgcagtcac gatcatttcg cggcgtccct cgatcgtttt cacgatacgt
      301 agcaggtgat cgtagacatc gcggaaatag tcctgcatgc cggtacaaat gcccggtgcg
      361 cggccgccgt agagtttgct caccgcttcc agcagcggcg cggtgtgatg ctgaagcagc
      421 acgaggcggc gcttaaggga atacaggtct tcaatgatta cccgcgacgc ggccgacccg
      481 ttgcgctcga aaatgcgttc ctcgagttcg tcgagctccg cgccgagcgt ttccagaatg
      541 gggaaatagc ggtccactac gttgtcgatc agcgcataca tcacgaatgc cgggccgtgt
      601 tcgagcaaat gcggctcgcg ctcgcagcgc ttgcgcacgt cctggaaccc ctggctcgtc
      661 cggttgcgaa cggaaagcac atagttgctg cccacaaaca cgttgatctc gccgaccacc
      721 aactcgttgt cggtatcgag ttccaccgtg tggagcacgc aaaagagcga gtccgcgtat
      781 tcgtcgatct tcggacgctg gtggcccttc tgggcgtctt ccacagcgag ttcgtgcagc
      841 ccgaactgat gcgccatatg cgcgagttcg cccggcccgg ggtctttcag cgcgacccac
      901 acaaagcagt cggggacgtc ccggtacgcg gaaatgtcgt cgatagcgac gtccgcgagc
      961 ttgcggcctt tctggtaagc cgcacaattg accagcatag attccagcct ctctcgcacg
     1021 gtgatgaaac cggcgcatgc cgcctttcgc gagcgtcttt cgcaaggaca ggcagcgcgt
     1081 gacgggagca tggccggact tgccgtgaat cttagcggat ttgtcaggcg cacactgcgc
     1141 gagcgctgta ttccgtggtc ttgcagcgca gccgccgtgt gagtcaggtc tcgctatggg
     1201 tgtagtcgtc cgaggtcact tcggagctga gccgcggcgg tgccgcctgt ggcgccaggg
     1261 tgttatcgcg tttcgtgagc ttgccttcca cggaagcccc cacatccatg cgcagttgct
     1321 ggtagtagat gttgccgttc acatgcgcat tcgattgcag ttcgacaaaa tgttccaccg
     1381 taacgtcgcc ggtgatggtt ccgttgatca cgatgtcgta ggcgatgacg ttgccggtga
     1441 tcgacccctg gtcgctcacg accagcaacg tctgttcgcc cgcgcgaccg gtcacgttgc
     1501 ccttcacgtg accatccatg cgcaggccgt cgctgaattc gaggttgccg gctatctgga
     1561 catcgtgtgc gatcagcgta gctagcttgg cttgactgac gccgggagat tttttcttga
     1621 acatgggaaa accccttctg gtctggattg caaaatggtt gccggtaatg aacggattga
     1681 tgtgccggcg tggt
//
LOCUS       DATGBK010000569         1817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_261781, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000569 DATGBK010000000
VERSION     DATGBK010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261781"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..724)
                     /locus_tag="VKJ77_08140"
     CDS             complement(<1..724)
                     /locus_tag="VKJ77_08140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45276.1"
                     /translation="MDTLKSMRVFARVVEAGSFTAAAQSHDSTTGAMSRAVSDLEAHL
                     RTRLLNRSTRRLSVTPAGERYLERCRQILADLDKAEEEASGAHERPAGTLRLFSFASI
                     GQHYLLPAISRYRAQYPDVTVELTMSQSAPDLFGGGNDVAVIGAPSLSDSEMVSHLLG
                     STCGILCASPHYVRSRGTPEKPGDLAQHECLILNTPAFPPHEWLLEGPGGSELILVRG
                     PLQVNIAESLVVAIRAGMGIGML"
     gene            complement(712..1251)
                     /locus_tag="VKJ77_08145"
     CDS             complement(712..1251)
                     /locus_tag="VKJ77_08145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45277.1"
                     /translation="MSHTTAQPLTALKARRSVHLLIWSDRHIGSSQPAAAPFVHRPIR
                     AFEKGGSRVRWFSAGVAEMFKSRSDGQSVDRITAASPAQKSRYQVVKSVLSHIGVAID
                     SKALVRALTALLPSIVLTLVSGQTEWLLVSLVTASTAKLANINNSVAISHVFCLGDVG
                     ERAARCGRDRLNSRVLWTH"
     gene            complement(1271..1813)
                     /locus_tag="VKJ77_08150"
     CDS             complement(1271..1813)
                     /locus_tag="VKJ77_08150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HMC45278.1"
                     /translation="MIDLQQGILGFGKAPRSAESVLTASAKLAKRFRELSAPVVLVRV
                     GWSHDFGDALKQPVDQPATPPAGGLPPTWWDFPEALEASEHDLKITKRQWNAFHGTEL
                     DLQLRRRGIKTIVLGGISTNIGVESTARAGYELGYTLVLAEDAMSCAAAEHHHASVNY
                     IFPRLGLVRQSEDVIKALAN"
BASE COUNT          373 a          562 c          541 g          341 t
ORIGIN      
        1 gcagcatgcc gatacccatt cccgcacgaa tggcgaccac aagcgattcg gcgatattca
       61 cctgcaacgg gccgcgaacc agaatcaatt cgctgccacc gggaccttcg agtaaccact
      121 cgtgcggcgg aaaagcaggc gtgttcaata tcaggcattc atgttgcgcc agatcgccgg
      181 gtttctcggg ggtgccccgc gaacgcacgt agtgcggcga agcgcacagg ataccgcacg
      241 tcgagccgag caagtgagaa accatctccg agtcagaaag cgaaggagcc ccaattacgg
      301 caacatcgtt gccgcctccg aacagatcag gcgcgctctg tgacatcgtc agttcgaccg
      361 tcacgtccgg gtactgggct cgataccttg agatcgccgg cagcaggtag tgctgcccaa
      421 tgctcgcgaa gctgaacaat cgcaacgtgc cggcgggacg ctcatgcgcg ccgctcgcct
      481 cctcctctgc cttgtcgagg tcggcgagga tttgccgaca acgctccagg tagcgctcgc
      541 cggctggcgt gacggaaaga cgccgcgtcg acctgttaag caggcgtgtg cgcaggtggg
      601 cttcgagatc tgataccgcg cgagacatgg cgccggtcgt cgagtcgtgc gattgagccg
      661 cagcggtgaa actgcccgct tcgacgaccc tagcgaacac ccgcatactt ttcagtgtgt
      721 ccataaaacc ctcgagttta gacggtcacg accgcatcgc gccgcgcgtt cgccgacatc
      781 acccagacag aacacgtggc tgatagcgac cgagttgttg atgttcgcta atttagcggt
      841 cgacgccgtt accagcgaaa cgagcaacca ctccgtctga ccggaaacca gcgtgagcac
      901 gattgacggc aaaagagcag tcaacgcgcg aacaagcgcc ttgctatcga tagcaacccc
      961 gatatgcgac aggaccgact tgacgacctg gtaacggctt ttttgcgccg gcgaagcggc
     1021 ggttatacgg tcaactgatt gtccatcgga ccttgatttg aacatctcgg cgactcctgc
     1081 actaaaccag cgcactctgc tgccgccctt ctcgaatgca cgtataggtc ggtgcacaaa
     1141 tggagcagcc gcgggttgac tcgatccgat gtgtcggtcg ctccagatga gaaggtgtac
     1201 cgatcgtcgc gccttcaatg ccgtcaacgg ctgcgcagtg gtgtggctca tggcctttcg
     1261 taggccggtg tcagttcgcg agcgccttga tcacgtcctc ggactgtcgc accaggccaa
     1321 gcctcgggaa aatgtaatta accgaagcgt gatgatgctc ggccgcggcg cagctcatcg
     1381 catcctcggc gagcacgagt gtatagccaa gttcatagcc ggctcgcgcc gtcgactcga
     1441 cacctatatt cgtcgaaatt ccgccgagca caatggtctt gatgcctcgg cgacgcaatt
     1501 gcagatcgag ttcggtgccg tgaaatgcgt tccactgccg cttcgtgatc ttgagatcat
     1561 gctcgcttgc ttcgagcgcc tcggggaagt cccaccacgt cgggggaagt ccgccggctg
     1621 gaggcgtcgc aggctggtcg acgggttgct tcagcgcatc gccgaaatcg tggctccagc
     1681 ccacgcgcac tagcacgact ggcgcactga gttcccggaa gcgcttcgcg agcttcgccg
     1741 aggcggtcag cacggactcg gcgctgcgag gggccttccc aaaaccaagg atgccctgct
     1801 ggaggtcgat cagaccg
//
LOCUS       DATGBK010000570         2025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_30574, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000570 DATGBK010000000
VERSION     DATGBK010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30574"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..679)
                     /locus_tag="VKJ77_08155"
     CDS             complement(<1..679)
                     /locus_tag="VKJ77_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HMC45279.1"
                     /translation="MKQVVRFAAAMVLAAVTLSGCVQAPRNLASAESPFSVEIRRTQD
                     GVPHIKADDWASLGYGYGYVQAQDNLCTLADGFITFRGERSANFGADARPPTAASFGQ
                     PRNLEADFFFRFVDDASTVERYRSAQSAPIRELIDGFVAGYNRYVDELDAGGMGGANA
                     ECRGKPWVGKITSDDMIRRLVAANLAGGAVRFLPQIARAQPPAKPAPSAPGVQTGAVD
                     IAPSQLDI"
     gene            complement(696..1523)
                     /locus_tag="VKJ77_08160"
     CDS             complement(696..1523)
                     /locus_tag="VKJ77_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45280.1"
                     /translation="MNANPAFLDQDAERVPDRESMYSLDEVSFSIGERVLLHPLSLEL
                     PKRRVCGLIGHNGSGKSTLLKLLARQQAPGSGTLRFAGKPLDDWEGRAFARKVAYLPQ
                     QPPAADGMTVRELVALGRYPWHGALGRFSAQDGAKVEEAMRLTDVERFAHRTVDSLSG
                     GERQRAWLAMLVAQDSECLLLDEPISALDIAHQIEVLQLVRTLSVERGLGVVVVLHDV
                     NMAARFCDDLLALKGGRLLASGTPAELMHADTLGAIYGIPMGTVPHPHGGSPISFAH"
     gene            complement(1529..>2025)
                     /locus_tag="VKJ77_08165"
     CDS             complement(1529..>2025)
                     /locus_tag="VKJ77_08165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cyclic peptide export ABC transporter"
                     /protein_id="HMC45281.1"
                     /translation="RQHFSVVFSDFYLFDTLFGMKVEGLDAQAKLLLEHLQLDHKVTI
                     KNGAFSTTDLSQGQRKRLALLVTYLEDRPFYVFDEWAADQDPTFKEVFYKQLLPELQA
                     KGKTVVVITHDDRYYHLADRYIKLDYGQVVELGRGADLRVDHPNAIHPQAHAAPASSP
                     VASA"
BASE COUNT          400 a          634 c          630 g          361 t
ORIGIN      
        1 ctatgtcgag ttgcgaaggt gcgatgtcga cggcaccggt ctgcacgccc ggtgccgacg
       61 gcgcgggttt cgcaggaggt tgcgcgcgag cgatctgtgg caaaaaccgt acggcgccac
      121 ccgcgagatt ggcggccact agccgccgga tcatatcgtc agaagtgatc ttgccgaccc
      181 acggcttgcc tctgcactcg gcattcgcgc cgcccatgcc gcccgcatcc agctcgtcga
      241 cgtagcggtt gtagcccgcc acaaaaccgt caatcaactc gcgaatgggc gcggactgag
      301 cggatcggta tcgctcgacc gtgctcgcgt cgtcgacgaa acggaagaaa aaatcggcct
      361 cgagattgcg cggctgtccg aaagaagccg ccgtgggcgg ccgcgcatcg gcaccaaaat
      421 tcgccgagcg ctcgccgcga aacgtgatga agccgtccgc gagcgtgcac aagttgtctt
      481 gcgcttgcac gtaaccgtag ccgtaaccca ggctggccca gtcgtccgcc ttgatatgcg
      541 gaacaccatc ttgcgtacgg cgtatctcga cgctaaaggg cgactcggca ctcgccaggt
      601 ttcggggggc ttgcacacag ccgctcaacg tgactgcggc gagcaccatc gccgccgcga
      661 acctgacaac ttgcttcatg agatcgaacc ttgaatcaat gggcgaaact gatgggtgaa
      721 ccgccgtgag ggtgcgggac cgtgcccatt ggaataccat aaatcgcgcc gagtgtgtca
      781 gcgtgcatca actccgcggg ggtgcccgaa gccagcaggc ggccgccctt gagcgccagg
      841 agatcgtcgc agaaacgcgc ggccatgttg acgtcgtgca gcaccaccac cacgccgagt
      901 ccgcgctcga cactcaaggt ccgcaccaat tgcaaaacct cgatctgatg cgcaatgtcc
      961 agcgccgaaa tgggttcgtc aagcagcagg cattcgctgt cctgcgcgac aagcatggcg
     1021 agccacgcgc gctggcgctc accaccggac aagctgtcca ccgtgcggtg cgcaaaccgc
     1081 tcgacgtcgg tcagccgcat ggcctcttcc accttcgcgc cgtcttgtgc gctgaagcgc
     1141 ccgagcgcac cgtgccacgg ataacgcccc agcgcgacga gttcgcgcac ggtcatgccg
     1201 tcggcggcag gtggttgttg cggcaggtac gcgactttgc gagcgaacgc gcgaccctcc
     1261 cagtcatcga gcggcttgcc tgcgaaacgc agcgtgccgc tgcctggtgc ttgctggcgt
     1321 gcgagcagct tgagcagcgt ggacttgccg gaaccattgt gcccaatgag tccgcatacg
     1381 cggcgcttgg gcaactcgag cgacagcgga tgcagcagca cccgctcgcc gatactgaac
     1441 gagacctcgt cgagcgaata catggactcc cgatcgggca cgcgctctgc gtcctggtcg
     1501 agaaatgcgg ggttggcgtt catatcggtt atgccgatgc aaccggtgat gacgcgggcg
     1561 ccgcatgagc ctgcggatga atcgcgttcg gatgatcgac gcgcaggtct gcgccacggc
     1621 cgagttcaac cacctgaccg tagtcgagct tgatatagcg atcggcgaga tggtaataac
     1681 ggtcgtcgtg cgtgatgacc acgacggtct tacccttggc ctgaagctcc ggcagcaact
     1741 gcttgtagaa cacttccttg aaggtcgggt cctggtcggc ggcccattcg tcgaagacgt
     1801 agaacggccg gtcttccaga tacgtgacca gcaacgcaag acgtttgcgc tgaccttgcg
     1861 acagatcggt cgtggaaaat gcaccgttct tgatcgtgac cttgtgatcg agttgcaggt
     1921 gttcaagcag caacttcgct tgggcgtcga gcccttccac cttcatgccg aacagcgtgt
     1981 cgaacaggta gaagtcgctg aagaccacag agaaatgctg gcgat
//
LOCUS       DATGBK010000571         1651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_30577, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000571 DATGBK010000000
VERSION     DATGBK010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30577"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..409)
                     /locus_tag="VKJ77_08170"
     CDS             complement(134..409)
                     /locus_tag="VKJ77_08170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45282.1"
                     /translation="MLESKITRRGLIAAAATGAAAIVLIGATTGSADAYQGNMERALE
                     QLQAALQSLREATPDKGGHKAHAVALIEQAMNQVQAGINFAAERFGD"
     gene            743..>1651
                     /locus_tag="VKJ77_08175"
     CDS             743..>1651
                     /locus_tag="VKJ77_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyclic terpene utilization AtuA family protein"
                     /protein_id="HMC45283.1"
                     /translation="MPKLIYRVVSTCGALGYGYPRESLRAALHGRVDAIVCDGGSVDA
                     GPFYLGAGKAYFERGAIKADYHHMVEVGRAFGCPVIVGSSGTAGGNRNLDGMIDIAKD
                     VFDELGLCEAKVAVIRSEIDPELAIRELRNGELRPTGCGPALSEEALRGSIIVGQMGV
                     HPLIAALVGGAQYIFAGRACDSALFAADMIRHGVDAGLAYHAGHILESGALACEPGSP
                     ADCLVCEIYDDRTAVFKAPNVARRCTPHSLAAHSLYQQSHPHLQFYPEGILSTEQTQF
                     FSHDNRSAGIRNSRFIRAGRPWPWSIK"
BASE COUNT          309 a          493 c          511 g          338 t
ORIGIN      
        1 ttggcaacct tgataatcat ggacgatcct tcagcgcctg acaggaccgg tagcgcttga
       61 gacggggtcg cagcgccggc gagcgccacc gtcgccagag cgaaaacaag attcctcagc
      121 atctgttcgc tcctcagtcg ccgaaacgtt cggctgcgaa attgatgccc gcctgcacct
      181 ggttcatcgc ctgttcgatc agtgcgacgg catgggcctt gtggccaccc ttgtccggcg
      241 ttgcttcacg caatgattgc agtgccgcct gaagttgttc gagcgcgcgt tccatattgc
      301 cttgataggc gtcggccgaa cctgtcgttg caccgatcag cacaatggct gccgcgccgg
      361 ttgcggctgc cgcaatcaaa ccgcgacgtg tgattttgga ttcaagcatg attgtctccc
      421 gttgagatcg ttgacgtcca acgcagcgtc aatgctgcgc gcgcctcact cgccgaaagc
      481 gaaatcaaaa acaaatatcg attgattatg cggccatacc cggcggcgat agccagcctc
      541 gctggcgccg cgcggcggtc cgagcgtcgg gatcgcgggc gatggcgcga cgagcggcgg
      601 atcaggcggc tccggagacc tataatcggc ggcaatacct gcatatggaa gcgctatttg
      661 tttttggtcc gaagctggat catttgtgcg ccccgtcagt gggcaggcca aacgggattg
      721 cccttgcaac aagagcgacc caatgccgaa gctgatctat cgtgttgtct cgacctgcgg
      781 agcgctgggg tacggctacc ctcgagagtc gttgcgggca gcgctgcatg ggcgcgtcga
      841 cgcaatcgtc tgcgacggcg ggtcagtcga cgccggcccg ttttatcttg gggcgggaaa
      901 ggcttacttc gagcgcgggg cgataaaagc cgactatcat cacatggtcg aagtcggtcg
      961 ggccttcggt tgcccggtca ttgtcggcag cagcggcacg gcggggggca atcgcaatct
     1021 cgacggcatg atcgacatcg ccaaagacgt gttcgacgaa ctcggcctct gcgaggcgaa
     1081 ggtcgccgtg atccggtcgg aaatcgatcc ggaactggct attcgggagc tgcgcaacgg
     1141 tgaattgcgt ccgaccgggt gcggccctgc acttagcgag gaagccctgc gcggcagcat
     1201 catagtcgga cagatgggcg ttcatcctct catcgcggcg ctggttggtg gtgcgcaata
     1261 catctttgcc ggccgcgcat gcgacagcgc actctttgct gcggacatga tccgccatgg
     1321 cgtcgatgcg ggtctcgcct atcacgcagg acatatcctg gaatcgggcg cgctggcctg
     1381 cgagccgggc tcgcccgccg attgtctggt ctgtgaaatt tacgacgacc ggaccgcagt
     1441 cttcaaagcg cccaatgtgg cgcgacgttg taccccgcat tcgctcgcgg cccactcgct
     1501 ttatcagcag agccatcccc atctgcagtt ctatccagag gggattttgt cgacagagca
     1561 aacgcaattc ttttcgcacg acaaccgcag cgccggtatt cgcaacagtc gctttatcag
     1621 agcaggtcgt ccgtggcctt ggagcatcaa g
//
LOCUS       DATGBK010000572         1992 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_192600, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000572 DATGBK010000000
VERSION     DATGBK010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192600"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1362)
                     /locus_tag="VKJ77_08180"
     CDS             complement(<1..1362)
                     /locus_tag="VKJ77_08180"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC45284.1"
                     /translation="MKRCVLSCVLSCVPGFGVALLLSACAGPPVKVAAVPAVVEPAAW
                     QHDAAQTMSLDKDWWRQFGDPVLTALVEKALASNTDIGKAIGRVREARADARIARAAL
                     LPTLNAGFDHAGRSQIVSPFGTPLQLSTGQVDIETAWEVDLFGQLADQRAAARDAYLA
                     SAAARDATRLSVASSTASGYITLLSLDAQLKIAEATLAARANSLRLAKTEFENGYSSR
                     LELQQAQSEYDSTGQLIPQTKLAITRAENSLSVLTDDIPGDIPRGKVLDALTDPVIPQ
                     ELPSGLLRRRPDVAAAEYQLSAADKSLAAARKNFLPQFNLAASFGRSFGTEQVYPFNL
                     WSIGGSILAPLFEGGKLTALAEKTGAQRDQAAFAYRGTALTAISEAEKALAAVQRLDE
                     QLVLAIAQRDSLSEQLRIATNRYREGYAGYLDQLDAQRNLLSAELGVVQLRADTLAAR
                     VTLY"
     gene            complement(1359..>1992)
                     /locus_tag="VKJ77_08185"
     CDS             complement(1359..>1992)
                     /locus_tag="VKJ77_08185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019143139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HMC45285.1"
                     /translation="RRADALVKDGSLSKREYDQTRAALLAARATLQQAVAGRSIGSED
                     VRTVLVARPGLQAAIDSAKAALRSAQVDLENTVIRAPVDGQLSEVGVRNGDYVTAGTQ
                     MMSLVPHTVWVVANYKEAQTHRMRAGQRVTFRVDALGDAELHGHVETIAPATGSEFAA
                     IKPDNATGNFVKVAQRIAIRISVDPGQELARRLRPGMSVETAVDTRDGDR"
BASE COUNT          343 a          655 c          639 g          355 t
ORIGIN      
        1 atagagcgtc acgcgcgccg caagcgtatc ggctcgaagc tgcaccacac cgagttccgc
       61 tgaaagcagg ttgcgctgcg cgtcgagctg atccagatag cccgcgtaac cttcgcgata
      121 tcgattggtg gcaatccgca actgttcgga cagggagtcg cgctgggcga ttgccagcac
      181 cagttgctca tcgagacgct ggacggcggc caacgctttt tcagcctcgc tgatcgcggt
      241 cagtgcagtg ccacgatagg cgaaggcggc ctggtcgcgc tgcgcgccgg tcttttcggc
      301 aagcgcagtc agcttgccgc cctcgaacag cggcgcaaga atgctcccgc ctatcgacca
      361 gaggttgaac gggtagacct gctccgtgcc gaaggagcgg ccaaacgagg ccgccagatt
      421 aaactgcggc aggaagttct tgcgcgccgc ggctagcgac ttgtctgctg ctgaaagctg
      481 gtactccgca gcggcgacgt cggggcgccg ccgcaacaac ccggatggca actcctgcgg
      541 aatgaccgga tcggtcagcg cgtcgagcac cttgccgcgc gggatatcgc ctgggatatc
      601 gtcggtgagc acgctcagcg aattttcggc gcgcgtaatc gccagcttcg tctgcgggat
      661 gagctgcccg gtcgaatcgt attccgactg cgcctgctgc aattccagcc gcgacgaata
      721 gccgttctcg aattccgttt tggcaaggcg cagcgaattc gcgcgcgcgg ccagggttgc
      781 ctcggcgatc ttcaactgtg catcgagact gagcagcgtg atatagccgc tcgccgtcga
      841 actggcgact gacagccgcg tcgcatcgcg tgcggccgcg ctggcgagat acgcatcgcg
      901 cgcggcggca cgctggtcgg ccaactggcc gaacaggtcc acttcccacg cagtctcgat
      961 gtctacctgt ccggtgctta gctggagtgg cgtaccaaac gggctgacga tctgggagcg
     1021 cccggcatga tcgaagccgg cgttgagcgt tggcagcaac gccgcacgcg cgatccttgc
     1081 gtctgcgcgc gcctcgcgca cgcggccgat tgccttgccg atatcggtat tgctggcgag
     1141 cgctttttcc accagtgcgg tcaagaccgg atcgccgaat tgccgccacc agtccttgtc
     1201 cagcgacatc gtctgtgcgg catcgtgttg ccacgccgca ggctcgacga cagcgggcac
     1261 ggcggcgacc ttgactggcg gccccgcgca cgcagacagc agcagggcaa cgccgaagcc
     1321 agggacgcag ctaagaacgc aactaaggac gcagcgcttc atcggtcacc atcgcgagta
     1381 tcgaccgcgg tttcgaccga catgcccggt cgcagccgcc gcgccagttc ctgtcccgga
     1441 tcgacactga tgcgtatggc aatgcgctgc gcgaccttga cgaaatttcc ggtcgcattg
     1501 tcgggcttga tcgccgcaaa ctccgatccc gttgcgggcg cgattgtttc gacatggcca
     1561 tgcagctccg cgtcgcccag cgcatcgacg cggaacgtca cgcgctggcc ggcccgcatg
     1621 cgatgcgtct gcgcttcctt gtagttggcc acgacccaga cggtgtgcgg caccagcgac
     1681 atcatctgcg tgcccgccgt gacgtagtcg ccgttgcgca caccgacttc ggaaagctgt
     1741 ccatcgacag gcgcgcgaat cacggtgttc tccagatcga cctgcgcact gcgcagcgcg
     1801 gctttggcgg agtcgatcgc cgcctgcaat cctggccgtg cgacaaggac ggtgcgcaca
     1861 tcctccgagc cgatcgagcg gcccgcgacg gcctgttgca gcgtggcccg ggccgcgagc
     1921 aatgcagcac gtgtctggtc gtattcgcgc ttcgaaagcg atccgtcttt gacgagtgca
     1981 tcggcgcggc gc
//
LOCUS       DATGBK010000573         6029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_192609, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000573 DATGBK010000000
VERSION     DATGBK010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6029
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192609"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..834
                     /locus_tag="VKJ77_08190"
     CDS             <1..834
                     /locus_tag="VKJ77_08190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013435243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC45286.1"
                     /translation="RLIAERSLQPLRDKISELQLKEQAARISGEQFIEQLAAAGVNEA
                     DLQAKLTPDMKPSYLQGEVTRLNNAIAALGAVNMAALDELAAASERKDFLDAQSADLN
                     DAIGTLEDAIHRIDQETRSLLQGTFDEVNRHFGELFPRLFGGGQAKLVMTGDEILDAG
                     VQVLAQPPGKKNSTIHLLSGGEKALTATALVFAMFQLNPAPFCLLDEVDAPLDDANTE
                     RFANLVRAMSEKTQFLFISHNKIAMEMAQQLIGVTMQEQGVSRIVAVDMESAAGFAQN
                     A"
     gene            1081..2325
                     /locus_tag="VKJ77_08195"
     CDS             1081..2325
                     /locus_tag="VKJ77_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009890426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA C-terminal
                     FtsZ-binding domain-containing protein"
                     /protein_id="HMC45287.1"
                     /translation="MDELTLGLIGAGAVVVGGVVVYNAWQGAKVRRKMPRPMPDEAAE
                     SLARNDADEEQPFIEPTRPVRREPAMGEGDTPDTRVEPSFGGAPLSTVAPADTAVDIQ
                     AESTSVNGDFQEPDSSPMSPILADDDEPVLPAATTISSAPPAIVDRRIDCVVPIRLLA
                     PIAGEKLIPSAQKLRRAGAKPVHIEGKPEGGTTWELLKNGARYEELRAAAQLANRGGP
                     LNELEFSEFVTGVQRFADVIDGSPEFPDMLETVGMARELDAFAAQCDAQLSINILSDG
                     APWSANYVQAVASQDGLLLSRDGTRFVKLDARQNPVFMLLFGDTNFLRDDLTYKGGQM
                     ITLVLDVPVADEDILPFRLMCDYAKSLSERIGARVVDDQRRPLPESSLLAIEKQLMTL
                     YAKLEQAGIPAGSPATRRLFSQ"
     gene            2461..4566
                     /gene="ligA"
                     /locus_tag="VKJ77_08200"
     CDS             2461..4566
                     /gene="ligA"
                     /locus_tag="VKJ77_08200"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HMC45288.1"
                     /translation="MSAKPKAASKADSAVSAASAVHGAPIASAERPAERAAWLRTELE
                     RANYAYYVLDQPDLPDAEYDVLFKELQQIETNQPELITPDSPTQRVGGQVATSFQPVM
                     HDVPMLSLNNGFADEDIIAFDKRVADTLGHAPVEYACELKFDGLAISLRYDDGIFVQA
                     ATRGDGATGEEVTENVRTIRSIPLKLKGKNVPKRLDVRGEVLMFKRDFEKINARQREA
                     EQREFANPRNAAAGGLRQLDPKMTAQRQLSFFAYGIGLLEGAEMPSSHSALLDWYKEM
                     GLPVNAERGVVQGAEGLLEFFRKTGEQRDGLPYDIDGVVYKVNQRDEQDKLGFVSRAP
                     RFALAHKFPAQEALTQLLAIDVQVGRTGALTPVARLTPVFVGGATVTNATLHNEDEVR
                     RKDIRIGDTVIVRRAGDVIPEVVGAILDRRPEDAREFVMPTECPVCGSKIERLPDEAI
                     ARCTGGLICPAQRKQALWHFAQRRALDIDGLGEKIIDQLVDENIVRTPADLFNLGVAT
                     LAALDRFADKSAQNLYDSLEKAKQTTLPRFLYALGIRHVGESTAKDLAKHFGSLDPIM
                     AASVEELLEVNDVGPVVAESLHNFLSEAHNQMVIEQLRAPGKVTWPEGPPAPKAPQGV
                     LAGTTVVLTGTLPTLSREDAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEEL
                     GVPVLDEEGMRKLLEGETP"
     gene            4563..5096
                     /gene="def"
                     /locus_tag="VKJ77_08205"
     CDS             4563..5096
                     /gene="def"
                     /locus_tag="VKJ77_08205"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HMC45289.1"
                     /translation="MIREILKMGDPRLLRIAESVDHFDTPELHALVEDMFDTMRHANG
                     AGLAAPQIGVDLQVVIFGFAHNERYPEAEPVPETVLINPIITPVSHDMEEGWEGCLSV
                     PGLRGAVQRYSMIRYQGFDQYGSPIERLAEGFHARVVQHECDHLIGKLYPMRITDFSK
                     FGFTEIMFPGLDPKSDD"
     gene            complement(5333..5572)
                     /locus_tag="VKJ77_08210"
     CDS             complement(5333..5572)
                     /locus_tag="VKJ77_08210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45290.1"
                     /translation="MSVEIIVRETKTGLEIVSGRRRLDALLAVRDEVVVTSPGVGEVV
                     IARLPDGRLQASANPEHIALFRQPEMASGPKKSFA"
     gene            complement(5790..>6029)
                     /locus_tag="VKJ77_08215"
     CDS             complement(5790..>6029)
                     /locus_tag="VKJ77_08215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="HMC45291.1"
                     /translation="LLRHGLSLDDVPLKTAQVSWQNGEQLRFVLREGKKRQIRRMCEL
                     VGLEVVGLKRIRMGHVTLGALPPGQWRYLGADEAF"
BASE COUNT         1219 a         1756 c         1894 g         1160 t
ORIGIN      
        1 cgtcttatcg ccgaacgttc gctgcagccg ttgcgcgaca agatcagcga attgcagttg
       61 aaggaacagg cggcacgcat cagcggcgag cagttcatcg agcaactggc ggcggcaggt
      121 gtgaatgaag ccgacttgca ggccaagctc acgccggaca tgaaaccctc gtatctgcag
      181 ggcgaagtca cgcggctgaa taacgcaatt gcagcgcttg gcgccgtgaa catggcggcg
      241 ctcgacgaac tcgccgcggc cagcgaacgc aaggatttcc tcgacgcgca atcggcggat
      301 ttgaacgacg ccatcggcac gctggaagat gcgatccaca ggatcgatca ggaaacgcgt
      361 tcgctgctgc aaggcacgtt cgacgaagtg aaccgtcatt tcggcgaact gttcccacgt
      421 cttttcggcg gcggtcaggc gaaactcgtg atgaccggcg acgaaatcct cgatgccggc
      481 gtgcaagtgc tcgcgcaacc gccgggcaag aagaattcga ccattcactt gctgtcgggc
      541 ggcgaaaagg cccttaccgc caccgcgctc gtgtttgcga tgttccagtt gaatccggcg
      601 ccgttctgtc tgctggacga agtggatgcg ccactcgacg acgccaacac ggagcgcttc
      661 gcgaacctcg tgcgggcgat gtcggagaaa acgcaattcc tcttcatctc gcacaacaag
      721 atcgcgatgg aaatggcgca acaactgatc ggcgtgacga tgcaggaaca gggcgtctcg
      781 cggattgttg ccgtggatat ggaatccgcg gcgggtttcg cccagaatgc ttgaacgttt
      841 ggccgggctt ttttagaacg gacagcaaga tagtgtggat agtgtggaaa accggcctgg
      901 gaggccggtt ttggcgcgca ggcgcggagt ggcccacgca gttcggatgc aaatccgcaa
      961 gcgtgtgggg cgcagatcgc gcagcgtaag ctcaacaagc gctcaatcga gcgccggatg
     1021 ccttcaatag cgccgccaag cgcgccgaga gcgcaaccag aaaagaatga cggagagtgc
     1081 atggacgagt tgacactcgg gttgattgga gcgggagccg tggtggtagg cggcgtggtg
     1141 gtgtacaacg cgtggcaggg cgccaaagtg cgccgcaaga tgccgcgccc gatgcctgac
     1201 gaagccgcgg agtcgcttgc gcgcaacgac gccgacgagg agcagccgtt catcgaaccg
     1261 acacgcccgg tgcgacgtga acccgccatg ggcgagggcg acacgccgga tacgcgggtc
     1321 gagccgagtt tcggcggtgc gccgctctca accgtcgcgc cggccgatac cgcagtcgat
     1381 atccaggctg aatcgacctc ggtgaatggc gatttccagg aaccggattc gtcacccatg
     1441 tcgcccatcc tggccgacga tgacgaaccc gttttgcccg cagccaccac gatttcctcg
     1501 gcgccgccgg ctatcgtgga tcggcggatc gattgcgtgg tgccaatccg tttgcttgcc
     1561 cccatagcgg gcgaaaagct gattccgagc gcgcagaagt tgcgccgcgc gggcgcgaag
     1621 cccgtgcata tagaaggcaa gccggaaggc ggcacgacct gggaattgct taagaacggc
     1681 gcgcgttatg aagaactgcg cgcagcggcg cagctagcca atcgcggtgg cccgctaaac
     1741 gaactggagt tctcggagtt tgtcacgggc gtgcagcgtt tcgccgatgt aatcgacggc
     1801 tcccccgagt ttcccgacat gctggaaacg gttggcatgg cccgtgaact cgacgcgttc
     1861 gcggctcagt gcgacgcgca gttgtcgatc aacattctct ccgacggcgc gccgtggtcg
     1921 gccaactacg tgcaagcagt ggcctcgcag gacggtttgc tgctgtcgcg cgacggtacg
     1981 cgtttcgtca agctcgatgc gcgccagaac cctgtgttca tgctgctttt cggcgatacc
     2041 aacttcctgc gcgacgacct gacctacaag ggcggccaga tgatcacgct ggtgctggac
     2101 gtaccggtcg ccgacgaaga catcctgccg ttccgcctga tgtgcgatta cgcgaagtcg
     2161 ctctccgagc gcattggcgc gcgcgtagtg gacgaccagc gccggccgtt gccggaatcg
     2221 tcgctgcttg caattgaaaa gcagttgatg acgctgtacg cgaagctcga acaggctggt
     2281 attccggctg gctcccccgc cacgcggcgc ctgttcagtc aataaggatg ttacggcggc
     2341 ggccgttcga cagttagcgg ttttcgtaag gcatcggcca ctcggtcgat gccacgatca
     2401 gccgatctct gagacaatca acaggtcggt ttcttctaac tttctagcct gtctcgccgc
     2461 atgtctgcca aaccgaaagc tgcttccaaa gctgactccg ctgtctctgc tgcttccgct
     2521 gtgcacggcg cacccatcgc cagcgccgag cggccggctg agcgcgccgc ctggctgcgc
     2581 acggagctcg agcgcgccaa ctacgcgtat tacgttctcg atcagccgga tctgcccgac
     2641 gccgaatacg acgtcctgtt caaggaactg cagcagatcg agaccaatca gcccgaactg
     2701 atcacaccgg actcccctac gcaacgcgtt ggcggtcagg ttgcaacgag ttttcagccg
     2761 gtcatgcatg acgtgcccat gctctcgctg aataacggtt tcgccgacga agacattatc
     2821 gcgttcgata aacgtgttgc cgacacgctc ggtcacgcgc ccgtggaata cgcgtgtgaa
     2881 ttgaaattcg acggcctggc tatttccctg cgttatgacg atggcatttt cgttcaggcg
     2941 gccacgcgcg gtgacggtgc gacgggagaa gaggtcacgg aaaacgtccg aaccatccgt
     3001 tcgattccgc tgaagctcaa gggcaagaac gtaccgaagc ggcttgatgt gcgcggcgaa
     3061 gtgctcatgt tcaagcgcga ttttgagaag atcaacgcgc ggcagcgcga ggctgagcaa
     3121 cgtgagtttg cgaatccgcg taatgcggcg gctggcggtt tgcggcaact cgatcccaaa
     3181 atgaccgcgc agcgtcagtt gtcgtttttc gcttatggca ttggcctgct ggaaggtgca
     3241 gagatgccgt cgtcgcattc ggcgctgctc gactggtata aggaaatggg cctgccggtc
     3301 aacgcggagc gcggcgtggt gcagggcgct gaaggcctgc ttgagttctt ccgtaaaacg
     3361 ggagaacaac gcgatggttt gccgtatgac atcgacggcg tggtctacaa ggtcaaccag
     3421 cgcgacgagc aggacaagct gggtttcgtc tcgcgtgcac cgcgcttcgc gctcgcgcac
     3481 aagtttcccg cgcaggaagc gctcacgcag ttgctggcta tcgacgtgca agtcggtcgt
     3541 actggcgccc taacgccagt cgcgcgtctt acgcctgtgt tcgtcggcgg cgcgacggta
     3601 acgaatgcca cgctgcataa cgaggacgag gttcgccgca aagacatccg catcggcgat
     3661 acggtgattg tgcggcgtgc cggtgacgtc atccccgaag tggttggcgc gatcctcgac
     3721 cggcgtccgg aagatgcccg tgagttcgtg atgccgaccg agtgcccggt atgcggatcg
     3781 aagattgaaa ggcttcctga cgaagccata gctcgctgca ccggcggcct gatctgtccc
     3841 gcgcaacgca agcaggcgtt gtggcatttc gcgcagcggc gcgcgctgga tatcgacggg
     3901 ctgggtgaga agatcatcga ccaactggtc gacgagaata ttgtgcgcac gcctgcggac
     3961 ctgttcaatc tcggggtagc aacgctcgcg gcgcttgatc gtttcgccga taaatctgcc
     4021 caaaatctgt acgattccct cgaaaaagcg aagcagacca cgctgccgcg ttttctgtac
     4081 gcgctcggta ttcgtcacgt cggggagtcg acggcgaagg atctggccaa gcatttcggc
     4141 tcgctcgatc cgatcatggc ggcaagcgtt gaggaattgc tggaagtcaa cgatgtcggc
     4201 ccggtcgtgg ccgagtcgct gcacaatttt ttgagcgaag cgcacaacca gatggtgatc
     4261 gagcagttgc gcgcgccggg taaggtgacc tggcccgaag gcccgcccgc gccgaaggcg
     4321 ccgcagggcg tcctcgccgg cacgacggtc gtgctcaccg gcacgctgcc cactctgtcc
     4381 cgcgaagacg cgaaggagat gctggaggcg gcgggcgcga aagtggcggg atcggtgtcg
     4441 aagaagacgg attacgtggt ggcgggggcg gaggcgggca gcaagctcgt gaaggctgag
     4501 gaactcggcg tcccggtgct cgacgaagag ggtatgcgca agcttttgga gggagaaaca
     4561 ccatgattcg cgaaatcctc aagatgggcg atccgcgctt gttgcgtatc gccgagtcgg
     4621 tcgatcactt cgataccccc gagctgcacg ctcttgttga agacatgttc gacaccatgc
     4681 gccacgcaaa cggcgcaggg ctggccgcgc cgcagatcgg cgtggatttg caggtcgtga
     4741 tcttcggttt cgcgcacaac gagcgttatc cggaggctga accggtgccg gaaacggtgc
     4801 tgatcaaccc gatcatcacg ccggtttcgc atgacatgga ggagggctgg gaagggtgtt
     4861 tgtcggtccc gggcctgcgc ggcgccgtgc agcggtattc catgatccgc tatcaggggt
     4921 tcgatcaata cggctcacct atcgaacggc tggccgaggg atttcacgcg cgcgtcgtgc
     4981 agcacgaatg cgatcacctg atcggcaagc tttatcccat gcggatcacg gatttctcga
     5041 aattcggctt taccgagatc atgtttcctg gacttgatcc aaaaagcgat gattgatcga
     5101 aggagaggcg agcggctggg ttgacaggcc gctcagccgc tggacgaaat aagggccgcg
     5161 aagagaatcg cggccctttt gtttggagag atgctttgac gcgatgctgc tttcgtcgcg
     5221 gcacctgatt gactggcgac gtgctcggcc gtgcagtaca gaatcgaact gtttagccgg
     5281 accattcatg catcaagaaa tcaaaacccg ccaaaacccg gcggcttcat tctcaagcga
     5341 agcttttctt cggtcccgac gccatttccg gctggcgaaa caatgcaatg tgctccggat
     5401 tcgccgatgc ctgcaagcgt ccgtccggca aacgggcgat cacaacttca cccacgcccg
     5461 ggctcgtcac aacgacttcg tcgcgcacgg cgagcagcgc atcgagtcga cgtcggccgc
     5521 tgacgatttc gaggccggtt ttggtttcgc gaacaatgat ctcaacggac atggcaattc
     5581 tccagtagct caacgcccaa gcacacgcga ctcgaagcgg taatttgcgc gtgtatctga
     5641 ctaacggtca tgagtcatat tttctttagc caaaaagttg gccaaaaaaa aatcgatgcg
     5701 atcggcggct gccgttcgca tcgattggta acaatttctt cgtttttcca cgacgttttg
     5761 gggcgtgcgg aaaaggcagc gaagctgttt tagaacgctt cgtccgcgcc cagataacgc
     5821 cactggcccg gcggcagggc gccgagcgtc acgtgaccca tccggatccg cttcaggcca
     5881 accacttcca gcccaaccag ctcgcacatg cggcgaatct ggcgtttttt gccttcacgc
     5941 aacacaaagc gcaactgttc accattttgc caactgactt gcgctgtttt gagcggcacg
     6001 tcgtcgagcg agagtccgtg gcgcaatag
//
LOCUS       DATGBK010000574         1788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_284908, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000574 DATGBK010000000
VERSION     DATGBK010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284908"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1390)
                     /gene="guaA"
                     /locus_tag="VKJ77_08220"
     CDS             complement(<1..1390)
                     /gene="guaA"
                     /locus_tag="VKJ77_08220"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006402676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HMC45292.1"
                     /translation="MHDKILILDFGSQVTQLIARRIRESHVYSEIHPYDVDEAFIRDF
                     APKGIILSGGPNSVTELGSPRAPHVVFDLGVPVLGICYGMQTMAEQLGGKVELGNVRE
                     FGYAEVRAHNHTSFLNGIEDFHTAEGHGMLKVWMSHGDKVSDMPVGFKLMASTPACPI
                     AAMADDERHFYGLQWHPEVTHTVQGRAMLDRFVLELCGARPDWEMGHYIDEAVEKIRA
                     QVGDEHVILGLSGGVDSSVAAALLHRAIGAQLTCVFVDHGLLRLNEAEQVMTTFADHL
                     GVKVIHVDASEVFLSKLAGVTDPEAKRKIIGAEFVEVFQTEANKLKDAKWLAQGTIYP
                     DVIESAGKGKKGHTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRELGVKLGLPPAMV
                     YRHPFPGPGLGVRILGEVKKEFAELLRHADAIFIETLRNTFDKESGKSWYELTSQAFA
                     VFLPVKSVGVMGD"
BASE COUNT          404 a          586 c          465 g          333 t
ORIGIN      
        1 catcgcccat cacacctacg cttttaaccg gcagaaacac cgcaaaagcc tggctcgtga
       61 gctcatacca cgacttaccc gattccttat caaacgtatt cctcaacgtt tcgataaaga
      121 tcgcatccgc gtgacgcagc agctcagcga actccttctt cacttcgccc aagatccgca
      181 ctcccaaacc cggacccggg aacggatgcc gataaaccat cgccggcggc agccccagct
      241 taacgcccaa ctcccgcact tcgtccttga acaattcgcg caacggctca agcaacttca
      301 aattcagcgt ctcgggcaaa ccacccacgt tgtgatggct cttgatcgtg tggcccttct
      361 tgcccttgcc tgccgactcg atcacatccg ggtaaatcgt cccttgcgcg agccacttcg
      421 cgtccttcag cttgttggct tccgtctgga acacttcaac gaactcggcg ccaataatct
      481 tccgcttcgc ctcaggatca gtcaccccgg caagcttcga taaaaacact tcgctggcat
      541 caacatgaat caccttcacg ccaaggtggt cggcgaacgt ggtcatgacc tgctcggctt
      601 cattcaaccg cagtaatccg tggtcaacaa aaacacacgt caattgcgca ccaatcgcgc
      661 gatgcaaaag cgccgccgcc accgacgaat ccacgccccc cgacaaccca agaatcacgt
      721 gctcgtcgcc gacttgcgcg cgaatcttct cgaccgcttc atcgatgtaa tgccccatct
      781 cccagtccgg ccgcgcgcca cacaactcaa gcacgaagcg atcgagcatc gcgcgtccct
      841 gcacggtatg cgtgacttcc ggatgccact ggagaccgta gaaatggcgt tcgtcatccg
      901 ccatcgcggc gatcggacaa gccggcgtcg atgccatcag cttgaatccg accggcatgt
      961 ccgacacctt gtcgccgtgg ctcatccaca ctttcagcat gccgtggcct tcagccgtat
     1021 ggaaatcttc gatgccgttc aggaagctcg tgtggttatg cgcccgcact tcggcatagc
     1081 cgaattcgcg gacattgccg agctcgacct tgccgccgag ttgttcggcc atcgtctgca
     1141 tgccgtagca aataccaagc accggcacgc cgagatcgaa gacaacatgc ggcgcacgcg
     1201 gcgagccgag ttcggtgacc gagttcgggc cgcccgacaa aatgatgccc ttcggtgcga
     1261 agtcgcggat gaacgcttca tcgacgtcgt acggatggat ctccgaatac acatgtgatt
     1321 cgcggatgcg tcgtgcgatc aactgggtga cttgggagcc gaaatcgaga atcaggatct
     1381 tgtcgtgcat ggcagcggcc gggaaggcaa gtgaacggaa agggttggca aaagcgcaaa
     1441 tacgataacg caagcagcag gaacgaggtc ccgcgcatcg cgtcacgcag aaagttcaac
     1501 ggccggcgat tacagccgac cgcagcaaga cagattcatc gatacaacga aacgcgacgc
     1561 tccgttcctc gatgggtgtt caaccgacgc aacgcagtcg ccaggacctg cgcgcgtgca
     1621 atcgttcagc gcggatcgcg gcgaaccgga tcgataaact gcccggtaac cggatccacc
     1681 gtacggcctg tgacggggtc gatcgcgcga ccggtttcag gatcgatctt gtgaccgctg
     1741 acgggatcga acgcgcggcc agtggcggga tccagcgaac gccccgta
//
LOCUS       DATGBK010000575         1868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_261834, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000575 DATGBK010000000
VERSION     DATGBK010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261834"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..609
                     /locus_tag="VKJ77_08225"
     CDS             <1..609
                     /locus_tag="VKJ77_08225"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HMC45293.1"
                     /translation="HGVALLPNTAGCQTVDEVLNTARMARELFDTPWLKLELIGDDYT
                     LQPDPIGLVEAAEILIREGFKVLPYCTEDLVIGRRLLDVGCEALMPWGAPIGTGKGVT
                     NPYGLRTLRERLPDVPLIVDAGLGVPSHACQVMEWGFDGVLLNTAVSQATFPPQMARA
                     FALGVEAGRMAYLAGPMAERDSAQASTPVVGMPFWHQDGSAA"
     gene            612..1673
                     /gene="thiE"
                     /locus_tag="VKJ77_08230"
     CDS             612..1673
                     /gene="thiE"
                     /locus_tag="VKJ77_08230"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HMC45294.1"
                     /translation="MVLLDKEVFWPPADELLEAAERIRRRLGEWPAGSKQWRICLSEP
                     DHPRFGDLIVDGGVKPLPEGVGRLELDAGRATLHLDNVEYALEGEWSDDWPAALAAFL
                     DCGFEPHDALVLALAWRPANLDELDAWPVDFFTFPKVANLPVAPSRPFPPCPERLGLY
                     PVLPSAEWVERVLDHGVQTAQLRRKTTDSGDLKQEIERSVAAGAKHEAQLFINDHWQE
                     AIKAGAYGVHLGQEDVETADLNAIAEAGLRLGLSTHGYYEMLKALHFKPSYLALGAVF
                     PTTTKVMPTAPQGLSRLAHYVRLLDGIVPLVAIGGINGSVLRQIISTGVGSAAVVRAV
                     TEAPDLAAAISALQHEFGR"
BASE COUNT          345 a          531 c          626 g          366 t
ORIGIN      
        1 cacggcgtcg cgttgctgcc caacacggcc ggctgccaga ccgtggacga agtgctgaac
       61 acggcgcgga tggcgcgtga actcttcgat accccgtggc tgaagctcga actgatcggc
      121 gatgactaca cgctgcagcc cgatccgatc ggcctcgtgg aagctgctga aatactgatc
      181 cgcgaaggtt tcaaggtgct gccgtattgc acggaggatc tggtgatcgg ccggcgtctg
      241 ctcgatgtgg gctgcgaggc gttgatgccg tggggcgcgc ctatcggaac ggggaaaggt
      301 gtgacgaatc cctacggatt gcgcacgctg cgtgagcggc tgccggatgt accgcttatc
      361 gtcgatgcag gtcttggcgt gccgtcgcac gcgtgccagg tgatggagtg gggttttgac
      421 ggcgtgttgc tgaacacggc cgtctcacag gcaacgtttc cgccgcaaat ggcccgcgcg
      481 tttgcgctgg gcgtcgaggc ggggcggatg gcctatctcg ccgggccgat ggccgagcgc
      541 gatagcgcac aagcgagcac gccggttgtc ggcatgccgt tctggcatca agacgggagt
      601 gctgcatgag tatggtgttg ctggataagg aagtattttg gccccccgcc gatgaactgc
      661 tggaagccgc cgagcgaatc cggcggcggc tgggcgagtg gccggcggga tcgaagcaat
      721 ggcgcatttg cctgagcgag ccggatcatc cgcgctttgg tgatttgatc gtagatggcg
      781 gcgttaaacc gctgccggag ggcgttggac gcctggagct ggacgctggg cgagcgacgc
      841 tgcatttgga taacgtcgag tacgcgctgg aaggcgaatg gtcggatgat tggccggccg
      901 cgctggccgc gttccttgat tgcggatttg aaccacacga cgcgctcgtg ctggcgctcg
      961 cgtggcgccc ggccaatctg gacgaactcg acgcgtggcc cgtcgacttt ttcacgttcc
     1021 cgaaggtcgc aaatttgccg gtggcgcctt caagaccttt ccccccttgc ccggagaggc
     1081 tgggcctata tcccgtcctg ccgagcgcgg aatgggtgga acgggttctc gatcacggtg
     1141 tccaaacggc gcaattacgc cgcaagacca ccgattccgg cgatttaaag caggaaatcg
     1201 agcgatcggt ggccgcgggc gcaaagcacg aggcgcagct tttcatcaac gatcattggc
     1261 aggaagccat caaggccggc gcgtacggcg tgcatctcgg gcaggaggac gtagagacgg
     1321 ccgacctgaa tgcgatcgcc gaagcgggct tgcgcctcgg cctgtcgacg catggctact
     1381 atgaaatgct gaaggcgctg catttcaagc cgagctacct cgcgctcggc gcggtgttcc
     1441 cgaccacgac gaaagtcatg ccaacggcgc cgcaagggtt gtcgcgtttg gcacattacg
     1501 tgcgattgct cgacggcatc gtgccgctgg ttgcaatagg cggcatcaac ggctcggttt
     1561 tgcgacaaat tatttcaacc ggtgtgggaa gcgcagcagt cgtgcgggcc gttacagagg
     1621 caccggatct ggctgcggcc atttctgcgc tgcaacacga attcgggcga taatgccccg
     1681 cattcggaaa aaagttcaga tcattaaacc agttgaaagg ggccgccacg acacctgtca
     1741 tgcagaggcc ctataattcg gcctctcgcg taaaaggatt gtcagcctcc gtgtcagctt
     1801 ctcccgagac cttgctagag cttcgcgacg tcgatttcgg ctacggcgat cggctcgtac
     1861 tatcgaac
//
LOCUS       DATGBK010000576         2310 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_308018, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000576 DATGBK010000000
VERSION     DATGBK010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308018"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..281
                     /locus_tag="VKJ77_08235"
     CDS             <1..281
                     /locus_tag="VKJ77_08235"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009521351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HMC45295.1"
                     /translation="YIFPGGMLPSPAVFVQSAERHGLKVVNQFSFGRDYARTLRIWRN
                     AFVAHLDQIRAQRFDERFIRLWDFYLCYCEAAFAHSNTDVIQFTLEHA"
     gene            314..832
                     /locus_tag="VKJ77_08240"
     CDS             314..832
                     /locus_tag="VKJ77_08240"
                     /inference="COORDINATES: protein motif:HMM:NF027363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016872 - intramolecular lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chalcone isomerase family protein"
                     /protein_id="HMC45296.1"
                     /translation="MLIVLPLQAFAFDAASVVRQTIPQARVQGEGELRMYGFHIYDAK
                     LFVGPTGLSSKELTARPFALDIEYARAFKGPAIAKRGRQEMDDLKVASKEQTAQWQEQ
                     MEKIFPDVQPGDHVIGVFVPERGTTFYADDKVIGTIPGDDFARAFFSIWLDPRTSAPG
                     LRNQLLANGAAQ"
     gene            complement(889..1641)
                     /locus_tag="VKJ77_08245"
     CDS             complement(889..1641)
                     /locus_tag="VKJ77_08245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhaM family polyhydroxyalkanoate granule
                     multifunctional regulatory protein"
                     /protein_id="HMC45297.1"
                     /translation="MTDTPGGTSPFGSFPGMTGFPQGDMMEKMWDMMKLNPFAAAAAP
                     GGSPSLSMMSDMLAPLTNVEELDKRIKDMRAVEQWLKLNLNMLQSAIQALEVQRATLA
                     TLRAFGAFAQSSVEKAKTSSAASSSASGWPAPPPEKPKAQAESQPGTEAPSESGVNDA
                     SFDPSGWWNMLQSQFNSLATLAMAQQNAGAATPSMSTDEDENGDDDNDGEDDVEPPEA
                     AAPQEADAPPAAKKAAAKKAPAGKAAPRKKPL"
     gene            complement(1711..>2310)
                     /locus_tag="VKJ77_08250"
     CDS             complement(1711..>2310)
                     /locus_tag="VKJ77_08250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HMC45298.1"
                     /translation="GDLHLVEQMASDFEVRARVWREARDLVYNVINCSKPIVSAMHGP
                     AVGAGLVAGLLADISIATKTARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLC
                     EPVSGEEAERIGLVSLAVDESELLTKAFEVANRLAQGSQTAIRWTKYALNNWLRTAGP
                     AFDTSLALEFMGFSGPDVQEGIKSLRERRAPDFPGGSPF"
BASE COUNT          419 a          725 c          682 g          484 t
ORIGIN      
        1 attatatttt tccaggcggt atgctgccct cgcctgccgt gttcgtgcaa tcggcggaac
       61 gccacgggct gaaagtggtc aaccagttct cctttggccg cgactatgcc cgcacgctca
      121 ggatatggcg caacgcgttc gttgcgcacc tcgaccaaat ccgtgcgcaa agattcgacg
      181 aacgattcat ccgcttgtgg gacttttact tatgttattg cgaggccgcg ttcgcgcact
      241 cgaacaccga cgtcatccag ttcacgctgg agcacgcctg attgcaagcg ccttcgctgc
      301 tgcgctcgcg cttgtgctga tcgtcttgcc gctgcaggcg tttgctttcg acgctgcatc
      361 ggtcgtgcgt cagacgattc cccaagcgcg cgtgcagggc gaaggcgagt tgcgcatgta
      421 cggttttcat atctacgacg ccaagctgtt tgtcgggccg accggtctgt cgagcaagga
      481 attgacggcg cggccgtttg cgctggatat tgaatatgcg cgcgctttca agggccctgc
      541 catcgccaaa agaggccgtc aggaaatgga cgacctgaag gtggcaagca aagagcagac
      601 ggcgcaatgg caagagcaga tggaaaagat cttcccggac gtgcagccgg gagatcatgt
      661 cattggcgta ttcgtgccgg aacgcggcac gacgttttat gccgacgata aagtcatcgg
      721 cacgatcccc ggcgacgact tcgctcgcgc attcttctcg atctggctcg atccacgcac
      781 gtcggcgccg ggcttgcgaa accagttgct cgccaacggc gcagcgcagt aggtaagccg
      841 cggtaagtta gcgcttcaac cgcatcgcca cgccgcttgg accatgggtc aaagcggttt
      901 ctttcgtggc gccgctttcc cggctggcgc tttcttcgct gcggctttct tggccgcagg
      961 tggcgcgtcg gcttcctgcg gcgcggcggc ttcaggcggt tctacatcgt cttcgccatc
     1021 gttgtcgtca tcgccgtttt catcttcatc cgtgctcatg ctcggcgtcg ccgcgccggc
     1081 attttgttgc gccatcgcca gggtcgcaag gctgttgaat tgcgactgaa gcatgttcca
     1141 ccagcccgaa ggatcgaatg aagcgtcgtt tacgccggac tcacttggcg cctcggtgcc
     1201 aggctgcgac tccgcttgcg ccttcggctt ttccggcggc ggtgctggcc acccggaagc
     1261 agacgatgac gccgccgacg aagtcttagc cttctccacc gacgactgcg cgaacgcgcc
     1321 gaacgcgcgc aacgtggcaa gcgtcgcgcg ctgcacttcc agcgcctgga tagccgattg
     1381 cagcatgttc aggttgagct tgagccattg ctcgaccgcg cgcatatcct tgatgcgttt
     1441 gtcgagttct tcaacgttcg tgagcggcgc gagcatgtcg gacatcatgg acagcgacgg
     1501 ggacccgccc ggtgccgcgg ctgccgcgaa cgggttcagc ttcatcatgt cccacatctt
     1561 ttccatcatg tcgccctggg ggaaaccggt catgcctggg aaacttccaa agggcgacgt
     1621 accaccgggc gtatcggtca tgagactttc tccttgatgc tacgggtacg tacgagatag
     1681 ggatgaaacc acaagatagt cgatgcggat ctaaaacggc gatccgcccg ggaaatccgg
     1741 cgcgcgccgc tcgcgcagcg acttgatgcc ttcctgaaca tcgggcccgg aaaagcccat
     1801 gaattcgagc gccagcgaag tatcgaaggc cgggccggcg gttcgcagcc agttgttcag
     1861 cgcgtatttg gtccagcgga tggcagtctg cgaaccttgc gccagacggt tcgcgacttc
     1921 aaatgctttc gtcagcaatt cgctttcatc cactgccagc gacaccagcc cgatgcgctc
     1981 cgcttcctcg ccgctcaccg gttcgcacaa cagcaggtaa tacttcgctt tcgccatgcc
     2041 gcacagcaac ggccacacga ttgccgcgtg atcgccggcg gctacgccga gccgcgtgtg
     2101 tccatcgata atgcgcgcag ttttcgtcgc gatggaaata tcggcaagca ggcctgccac
     2161 cagtcccgca ccgaccgccg gtccgtgcat cgccgagacg atcggcttgc tgcaattgat
     2221 cacgttatag acaagatcgc gcgcctcgcg ccagacccgc gcgcggacct cgaagtcgga
     2281 ggccatctgc tctaccagat gcaagtcgcc
//
LOCUS       DATGBK010000577         8069 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_192639, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000577 DATGBK010000000
VERSION     DATGBK010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 8069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8069
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192639"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /gene="pgk"
                     /locus_tag="VKJ77_08255"
     CDS             complement(<1..297)
                     /gene="pgk"
                     /locus_tag="VKJ77_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HMC45299.1"
                     /translation="MTKVLRFTDLIAEGKVSGKRVFIRADLNVPQDDQGNITEDTRVR
                     ASVPAIQQALAAGAAVMVTSHLGRPTEGQFKPEDSLAPVAKRLGELLGREVPLIA"
     gene            complement(786..1109)
                     /locus_tag="VKJ77_08260"
     CDS             complement(786..1109)
                     /locus_tag="VKJ77_08260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HMC45300.1"
                     /translation="MSAAQVWLAIAGMGLITSVTRALFLMGGERMILPERVQRALRYA
                     PAAALVAVVVPDLLTTPTGLSIAFSNHALYASLCGLAWFLWRRGMLGTIVVGMIVFTV
                     LRLFA"
     gene            complement(1106..1978)
                     /locus_tag="VKJ77_08265"
     CDS             complement(1106..1978)
                     /locus_tag="VKJ77_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HMC45301.1"
                     /translation="MFHRLSDLNRRAFLDGVKTLSPAVPATFSWGLVTGIAMAKSVLT
                     VPQALGMSLAAYAGSSQLAVLPLFAAKLPLWTILLTAAMVNLRFVIFSAGLAPHFAYL
                     PLRRRLVLGYFNGDIIYLMFQKRNFPTGYQPGKEAFFWGMAVTSWSSWQVSSIAGILL
                     ASLFPDNWGLELAGTLALIPLIVSAIATRSTLAAVGVASVIALIALDLPYRLSLPLAV
                     AAALLAGTFADVMAEKLGAGRKTSGAATRAESPAPRLTDAEPLNPSFDPSFDIQPSDL
                     DKSPVSPKRTRSTP"
     gene            2562..3485
                     /locus_tag="VKJ77_08270"
     CDS             2562..3485
                     /locus_tag="VKJ77_08270"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HMC45302.1"
                     /translation="MSMADRDGKIWMDGKLIDWRDANIHVLTHTLHYGMGVFEGVRAY
                     KTGTGTSIFRLKDHTKRLLNSAKIFQMEVPFDHATLEAAQLEVVGVNKLESCYIRPII
                     WVGSEKLGVSAKGNTIHVAIAAWPWGAYLGDDGIAKGIRVKTSSFTRHHVNVSMVRAK
                     ASGWYVNSILANQEAITDGYDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLASCLD
                     GITRDTVITLARDFGIQVIEKRITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGEGK
                     RGPITEKLQSAFFDIVSGKNEKYADWLAQVK"
     gene            3621..3815
                     /locus_tag="VKJ77_08275"
     CDS             3621..3815
                     /locus_tag="VKJ77_08275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HMC45303.1"
                     /translation="MSELKEMPLVQLSAKDVPAFCPNPNMPRWSTHPRVFLDISHGEA
                     RCPYCGTRYKLKDGETIKGH"
     gene            4111..5160
                     /gene="waaF"
                     /locus_tag="VKJ77_08280"
     CDS             4111..5160
                     /gene="waaF"
                     /locus_tag="VKJ77_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011401829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HMC45304.1"
                     /translation="MRRALVIAPNWIGDALMAQPLFSLLKKLHPRIVIDAVAPAWVAP
                     VLERMPEIHDVYATDLAHGKLQMLRRWQLASDLRDVGYDAAYVLPNSFKSALIPWMAG
                     INLRVGYKGESRYGLLNVRHANPAKGQRPPMVGQYAALAYAPGAKLPWLQENATVPMP
                     VPRLDADLNEAARVSTRFNLDTRAPLVVFCPGAEYGPAKRWPPEHFAALAQIIAQSFP
                     YARIVALGSPKDSPIAQAIADRAPNVRNLCGQTSLGEACALISRASAVVTNDSGLMHV
                     AAALRRPLVAVFGSTDPRHTPPLSDLAKVQWLHLECSPCFARECPLGHLNCLRELGAE
                     QVFGDLRGMLMMQRH"
     gene            5472..5918
                     /locus_tag="VKJ77_08285"
     CDS             5472..5918
                     /locus_tag="VKJ77_08285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HMC45305.1"
                     /translation="MPRFARLFEAAADTLNAYYQAVAEGNIDSIMALWIDEEFATFIC
                     ADGSHLSGLDSIRAGVVTQLENRPVTVEPLDIRVYDSLGTVVYAIAEAHQPIEPGSSP
                     TMVFSTYVMVHERGEWRIAHIHASAMPDEAAGQVAAKMRHGQGPLH"
     gene            6042..7340
                     /locus_tag="VKJ77_08290"
     CDS             6042..7340
                     /locus_tag="VKJ77_08290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC45306.1"
                     /translation="MKRDHAHLIPDAPALDTPSALEQTASAALDALSQTTLEPLAEWL
                     YRAPRWLPTAHAQTIVPALFAQRPAVKYRRERWTTPDGDFIDLDWLAYDVGGEGNNRV
                     HFDAATANASHPAPRELRNAVATSFNEAVPSHDGVGRDTVAPRGANPPPDPGAPLFVL
                     FHGLEGSSDSHYARVLMAEAKARGWFGVVPHFRSCGGSMNLLPRFYHLADSAEVDWVL
                     RRLKAQHPGPVIAAGVSLGGNVLLRWLCEQEQDAAAILDAAAAISAPLDVHAGGHAIS
                     QGFGMIYTRNFLKTLKRKALAKLDQYPGLFDRDAMLAARTMHAFDNAVTAPLHGFRDT
                     EDYWTRATTRPYLPRIAIPTLLLNARNDPFLPGRVLPSAAEVSAAVTLDQPAHGGHVG
                     FMTGPFPGRIDWLSQRVFGYLQTHVRHVHHVAHQTDSEHG"
     gene            7333..7947
                     /locus_tag="VKJ77_08295"
     CDS             7333..7947
                     /locus_tag="VKJ77_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2946 family protein"
                     /protein_id="HMC45307.1"
                     /translation="MDEIVKQALAKWPNVPHCTGWLLLDRRGQWRMRDDATQTAGLPG
                     DIIRHDALLGFINRNYAADADGQWFFQNGPQRVYVELGYTPWIVRLSEMDGAMDGEAD
                     GALRLTDHAGGRFEPTAAWLDDEGAVLFSDGADARDGMHAPRVAALHDHDLDLFSTHA
                     DLDDNGGVFHFAAGLDLALGHIDRADVPGKFGFVTSPAAKAAAL"
BASE COUNT         1591 a         2521 c         2499 g         1458 t
ORIGIN      
        1 ggcgatcagc ggtacttcac gcccgagcaa ttcgccaagc cgcttggcca ccggcgcaag
       61 cgagtcttca ggcttgaact gcccttccgt cgggcggccg aggtgggacg tgaccatcac
      121 cgcagcgcct gcagccagcg cttgctggat tgccggcacc gaggcgcgca cgcgcgtgtc
      181 ttcggtgatg ttgccctgat cgtcctgcgg aacgttcagg tcggcccgga tgaaaacacg
      241 tttgccggac actttgcctt cggcgatcag atcggtgaaa cgcaatactt tcgtcatggg
      301 agtcagcggg tgagcgagta attggaaagc ggttcgggcg agttgaatca gcgcgccgtg
      361 gatttatgcc agcgggctca caaaggtcgc tacggggaaa ctgaagtgct caaaaccatc
      421 ccggcgataa gccggcgtgc gcgcaacatt gccaggcgac cagcgccaag cggacgattc
      481 gaacgacgag tggaacatgt aagggacaac gaaacgaggc gtgccgcgcc tttcgccgac
      541 gacctggagg cccaggcgac gaggcgttgc agaggagaat ggagcgagtg aagctggtgt
      601 gcggtgactg ccggatacac gtttcgacct cattcgattc gacagcgaga gcgccatttt
      661 aaccgatacc catgcccgtt cgacgcagga aacgcaaatc cccaggattc gggattggcg
      721 agtttgcgat gcttacatga caccccgcgt gacacgccac atgacgcacc gcagcaaagt
      781 cagtgtcagg cgaacagccg cagcaccgtg aagacaatca tgccgacgac aattgtcccg
      841 agcatgccgc ggcgccagag aaaccaggcg aggccgcaca gggaagcgta gagcgcgtga
      901 ttcgagaaag caatcgacag gccggttggc gtagtcagaa gatcgggcac gactaccgca
      961 accagtgcag cagccggcgc gtagcgcaga gcgcgctgca cacgctcggg caggatcatg
     1021 cgctcgccgc ccatcaggaa cagcgcgcgc gtgacactcg tgatcagccc catgcctgcg
     1081 atggccagcc agacttgcgc ggcgctcatg gggtgctccg ggtgcgcttg gggctgaccg
     1141 gcgatttgtc gagatcggat ggctggatat cgaacgaagg atcgaatgag ggattcagtg
     1201 gctcggcgtc ggtgagacgg ggcgccggac tttccgctcg cgttgccgcg ccgctggtct
     1261 tgcgtcctgc ccccagcttc tccgccatga catcggcgaa tgttccggcg agcagcgctg
     1321 ctgccacggc cagcggcaat gaaagccggt acggcaggtc cagcgcaatc aacgcgatca
     1381 cgctcgcgac gccgacggcg gccagcgtgg agcgcgtcgc gatggccgag acgatcagcg
     1441 gaatcagcgc aagcgtgccg gcgagctcga ggccccagtt atcggggaaa aggctcgcga
     1501 gcaggattcc cgctatggat gacacttgcc acgaggacca gctcgtcacc gccatgcccc
     1561 agaaaaacgc ctccttgccg ggctgatagc cggtggggaa attacgcttc tggaacatca
     1621 ggtagatgat gtcgccattg aaatagccga gcaccagccg gcggcgcaac ggtagatagg
     1681 cgaaatgggg cgctagcccg gcgctgaaaa tgacgaatcg caagttgacc atggcggcgg
     1741 tcagcaggat ggtccagagc ggcagcttcg cggcgaacaa cggcagcacg gccagttgcg
     1801 atgatcccgc gtaggccgcg agcgacatcc cgagcgcctg cggcacggtc agcacggact
     1861 tggccatggc gatgccggtg acgagccccc acgagaacgt ggccggaacc gccggagaga
     1921 gggttttgac gccatcgaga aacgcgcgtc ggttgagatc tgacagccgg tggaacatgg
     1981 agtttggtgc gaatcgcggt gtgcgtgtgc ggttgagcgg cggagccgac ggatccggca
     2041 aagaacgggc agcggccgga cgactagcac agagccgccg cggatcaagc ctgaatcgct
     2101 gtctgaaacg acccaaaaca cgacccgaaa gcgccgcgac gagccttgaa tcacgcttag
     2161 tctcaagccc tgtcaagcca accgatccgg atgacgggct ttcggacgtt cctcacggtt
     2221 tgctttcgaa ccgcaacttt gactgcgcgc ggagtacatc gcgtgacggc gaaaggcaaa
     2281 ttatagcgtc gtgaaaggcg ccaaatggcc gacagcgccc attttttaat cgaaaagacg
     2341 ctaaaatgac ggtctttggt cgcccggccg tttgccggtt ttgcgctgga atcccatgcc
     2401 gcgcgcgccg tctccagaca ggcgccacgg accggaacaa ggcgcagaag gcccgtcgtc
     2461 atcgtcatgc tggtcaagcg ggcgaaagac gcgggtgaga caagctggtg caaaccggcg
     2521 gcccacttaa catctgcaca ctactcgcca ggagaaatcg tatgtcaatg gccgaccgcg
     2581 acggcaagat ctggatggat ggcaagctga tcgactggcg cgacgccaac atccacgtgc
     2641 tcacccacac gctgcactac ggcatgggcg tttttgaagg cgtgcgcgcc tacaagaccg
     2701 gcaccggcac gtcgatcttt cgcctgaaag accacaccaa gcgcctgctc aactccgcca
     2761 agatcttcca gatggaagtg ccgttcgatc atgcaacgct tgaagccgcg caactcgaag
     2821 tggtcggcgt gaacaagctg gaatcctgct acatccggcc gatcatctgg gtgggatcgg
     2881 agaaactggg ggtatcggcg aaaggcaaca ccattcacgt cgcgatcgcc gcgtggccgt
     2941 ggggcgccta tctcggcgac gacggcattg cgaagggcat ccgcgtgaag acgtcatcgt
     3001 tcacgcgcca tcatgtgaac gtctccatgg ttcgcgcgaa ggcgtcgggc tggtacgtga
     3061 actcgattct cgcgaatcag gaagccatca ccgacggtta cgacgaagcg ctgctgctcg
     3121 acgtggacgg ctacgtgtcc gaaggctccg gcgaaaactt cttcctggtg aacaacggca
     3181 agctgtacac gccggacctg gcttcgtgcc tggacggcat cacgcgcgac acggtcatca
     3241 cgctcgcacg cgacttcggc attcaggtga tcgaaaaacg catcacccgc gacgaggtct
     3301 acacctgcga cgaagccttc ttcaccggca cggccgctga agtcacgccg atccgcgagt
     3361 tggacaatcg caccatcggc gaaggcaagc gtgggccgat cacggaaaag ctgcaaagcg
     3421 ctttcttcga tatcgtgagc ggcaagaacg aaaagtacgc cgattggctt gcgcaggtta
     3481 agtgaccgag gttaagtaac ttaacgcgca atccgacgca tgacgtgcgg cggtgagccg
     3541 ggtttttcga gtcttcagga agactgaact cgaaaaacaa ggctcaccgc gtccccagac
     3601 tagaacgaac gagattcctc atgagcgaac tgaaggaaat gccgctggtc cagttgtcgg
     3661 cgaaagatgt gccggcgttc tgcccgaacc ccaacatgcc gcgctggagc acgcatccgc
     3721 gtgttttcct cgatatttcc cacggcgaag cgcgttgccc gtattgcgga acgcgctaca
     3781 agctgaaaga cggcgaaacg atcaagggtc attgaatctt cgacttcgcg aagacaagcg
     3841 gcatgcggct tgaaccacgc cgcccgcttg gtctccgcgg ccactagcga tgctgtcccg
     3901 caatcagccg atgctgcctc cgaccccgtt gaacaccacg ctccggccgc actcgatgtt
     3961 ttgaacgcac aacacgtcgc gcctcgacgc cggacaggcc ggatactagg taccggacgc
     4021 tggatgccag gcgccttccc cccaaattgc cacaacgcgc ccgcccacat ggtgtgagct
     4081 gcgttatttt tgagactgga acttacatag atgcgtcgcg cgttggttat cgcaccgaac
     4141 tggattggtg acgcattgat ggcgcagccg ctgttttcgc tgctgaagaa gctgcatccg
     4201 cgcattgtca tcgatgctgt cgcgcccgcc tgggtcgcgc ccgtgctgga acgcatgccc
     4261 gagatccacg atgtctacgc caccgatctc gcccacggca agctgcaaat gctgcgtcgc
     4321 tggcaactcg cgagcgatct gcgcgacgtg ggttacgacg ccgcgtacgt gctgccgaac
     4381 tcgttcaaat cggcgctgat tccgtggatg gcggggatca acctgcgagt cggttataag
     4441 ggcgaaagcc gctatggcct gctcaacgtg cggcacgcga atccggccaa gggtcaacgc
     4501 ccgcccatgg tgggccagta cgccgccctc gcctacgcgc cgggcgcaaa gctgccgtgg
     4561 ctgcaggaaa acgccacggt tcccatgccg gtaccgcggc tcgatgccga tctgaacgaa
     4621 gcggcgcgtg tctcaacccg ctttaatctc gatacgcgcg cgccgctcgt cgtgttttgt
     4681 ccgggcgcgg aatatggtcc ggcaaaacgc tggccaccgg agcatttcgc ggcgctcgcg
     4741 cagatcatcg cgcaatcgtt cccgtatgca cggatcgtcg cgctcggatc gccgaaagat
     4801 tcgcccatcg cccaggccat tgccgatcgc gcgccgaatg tgcgcaacct gtgcgggcaa
     4861 acgtcgctcg gcgaagcctg cgcgctgatc tcgcgcgcga gcgccgtggt gaccaacgat
     4921 tccggcctga tgcacgtggc cgccgcgctg cgccgcccgc tggtggccgt gttcggctcg
     4981 accgacccgc gccacacacc gccactctcc gatctcgcaa aggtacaatg gctgcacctc
     5041 gaatgcagtc cgtgctttgc ccgcgagtgt ccgctgggtc atttgaactg tttgcgtgaa
     5101 ctcggcgccg agcaggtttt cggcgattta cgcggcatgt tgatgatgca gcgtcattaa
     5161 aacgggttgg gctgaagcgg cttcggcgcc atggctcatg ctgattttgc tgatcgagca
     5221 ggcctggccg gccgcttcag cttcaaagac tgcttcatga cttcgtcagg acagcgtctg
     5281 ccacgcgagc ttccccggcg ccgtgaccgc atcctcccgg ttgccgatcg gtgaagcgtt
     5341 tgcggtatcg gcggttcctg acatgccaat gtccctaagc cggggcatgc ttttgaaact
     5401 tgaccgaacc gtggcgctca ctgtccaaga acatcaggcg ccatgcatcg accgttagag
     5461 acccactagc catgccacgt tttgcccgcc tcttcgaagc cgccgccgat accctcaacg
     5521 cctattacca ggctgtcgcg gagggcaata tcgacagcat catggcgctc tggatcgacg
     5581 aggaattcgc caccttcatc tgtgcggacg gctcgcatct gagcggtctg gacagcattc
     5641 gcgcaggcgt tgtgacgcaa ctggagaacc ggccggtcac ggtcgagcca ctcgatatcc
     5701 gcgtatacga tagtctcggc accgtggtct acgccattgc cgaagcgcac cagcccatcg
     5761 agccgggcag ctcgcccacc atggtgttca gcacctatgt aatggtccac gaacgtgggg
     5821 aatggcgcat agcgcatatc cacgctagtg cgatgccaga cgaagccgca gggcaagttg
     5881 ctgcgaaaat gcgacatgga caaggtccgc tgcattgaca tcggttttgc gggtacgctg
     5941 ggcagggtag ctggcgtccg cggctcgaca attgctctgt cagtctgatc ggcagaccgt
     6001 cggcatccgt tcgcatcctg cttcctgttt gaagacgcgc catgaaacgc gatcacgctc
     6061 atctcattcc tgacgctccg gcgctggata ccccctctgc gcttgagcaa accgcttcgg
     6121 ccgctctcga cgcactgagc caaacaacgc ttgaacctct ggccgaatgg ctgtatcgag
     6181 cgcctcgatg gctgcccacc gcccacgcgc agaccatcgt accggcgttg ttcgcacaac
     6241 ggccggcagt gaaataccgg cgggagcgat ggacgacccc ggacggcgat ttcatcgatc
     6301 tcgactggct ggcttatgac gttggcggtg aaggcaacaa ccgtgttcat ttcgatgctg
     6361 ccaccgcgaa cgcctcgcac cctgcgccgc gcgagcttcg aaacgccgtt gccacatcgt
     6421 ttaatgaagc cgtgccctcg cacgatggcg ttggccgcga cacggtagcg ccgcgagggg
     6481 cgaatccccc tcccgacccg ggcgcaccgc tctttgtgct cttccacgga cttgaaggca
     6541 gctccgactc ccactatgca cgcgtgctga tggctgaagc gaaggcgcgc ggctggtttg
     6601 gcgtcgtgcc gcatttccgc agctgcggcg gctcgatgaa tctcctcccg cgcttctacc
     6661 atctcgccga tagcgccgaa gtcgactggg tcctgcgtcg attgaaggcg caacatcccg
     6721 ggccggtgat cgcggcgggg gtatcgcttg gcggcaacgt gctgctgcgc tggctgtgcg
     6781 agcaggaaca ggacgcggcc gccattctcg acgctgccgc ggcgatctcc gcaccgcttg
     6841 atgtccacgc cggtggccat gcgatatcgc agggtttcgg catgatctac acgcgcaact
     6901 ttctcaagac gctcaagcgc aaggcgctgg cgaaactcga ccagtatccc ggcctgttcg
     6961 accgcgacgc catgctcgcg gcccgcacca tgcatgcctt cgataacgcc gtgaccgcgc
     7021 cgctccatgg ttttcgcgat accgaagact actggacccg cgccaccacc cggccctatc
     7081 tgccgcgcat tgccattcca acgttgctgc tgaacgcccg caatgatccg ttcctgcccg
     7141 ggcgagtgtt gccgtcggcg gcggaagttt cggcggccgt gaccctcgat caacccgcgc
     7201 atggcggcca cgtcggtttt atgaccgggc cgtttccggg gcggatcgac tggttgtcgc
     7261 agcgggtgtt tggctatttg caaacccatg tgcgtcacgt gcatcacgtg gcacaccaaa
     7321 cggattccga gcatggatga gatcgtcaaa caggcgctgg ccaaatggcc caacgtcccg
     7381 cattgcaccg gctggctgct gcttgatcgc cgcggccagt ggcgcatgcg cgacgacgcc
     7441 acgcagacgg caggccttcc cggcgatatc atccggcacg acgcgttgct cggcttcatc
     7501 aaccgcaact acgccgccga tgccgacggt cagtggttct ttcaaaacgg cccgcaacgc
     7561 gtgtatgtgg agctgggtta cacgccgtgg atcgtgcggc tgagtgaaat ggacggtgcg
     7621 atggacggcg aggcagacgg cgcgctgcgg ctgaccgatc acgcaggcgg gcggtttgag
     7681 ccgacggcgg cttggctcga cgatgaaggc gctgtactgt tttcagatgg tgccgatgcc
     7741 cgtgatggca tgcatgcgcc gcgcgtcgcc gcgttgcacg atcacgatct cgatctgttt
     7801 tccacacacg ccgatctcga cgataacggc ggcgtgttcc attttgcggc tggtctggac
     7861 ctggcgctgg ggcatatcga tcgagccgat gtgccaggta aatttggatt tgttaccagc
     7921 ccggcggcga aagcggcggc cttgtagcgc ctcctagcta tcgctcttct ccaacgctca
     7981 gtgtggcggc aacaagccgg tttggaccca tcgcaacttg gctatacggt cgccggggta
     8041 acgcgcggcc atcggctgaa aacgcttcg
//
LOCUS       DATGBK010000578         1710 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_6760, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000578 DATGBK010000000
VERSION     DATGBK010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6760"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..788
                     /locus_tag="VKJ77_08300"
     CDS             <1..788
                     /locus_tag="VKJ77_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HMC45308.1"
                     /translation="QIGAEIYGHAGLEADLEIQQLMLDSLRLSGLDKVRLDLCHAGVL
                     SALLELEPAAAALGEALFDALGAKDVPRLNELTAKLGDVTRDALRALPSLYGDASVLD
                     EARPRLPNLPVIGRALDDLAFLAAQANGAELMIDLADLRGYAYHSGVMFSAYVDGVPN
                     AVARGGRYDDVGQAYGRARPATGFSLDLREVARISPVDARGSAVLAPWKHDEPLLAAV
                     AQLRDAGEVVIQALPGHDHDLDEFAFDRVLVERDGKWVVEARS"
     gene            962..>1710
                     /locus_tag="VKJ77_08305"
     CDS             962..>1710
                     /locus_tag="VKJ77_08305"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HMC45309.1"
                     /translation="MSASAVNVNPGRNVVVVGTQCGDEGKGKIVDWLTDHAQGVVRFQ
                     GGHNAGHTLIIGGKKTILRLIPSGIMRAGTACYIGNGVVLSPEALFKEIGELESVGVD
                     VQKRLFISEAANLILPYHIAIDQAREARRGAAKIGTTGRGIGPAYEDKVGRRGLRVQD
                     LYDREVFAERLRETLDFHNFVLTGYLGAPAVDYQETLDTMFGYAERLAPMVTDVSRRL
                     YDENHAGRNLLFEGAQGTLLDIDHGTYPYVTS"
BASE COUNT          311 a          523 c          544 g          332 t
ORIGIN      
        1 tccagatcgg cgcggaaatc tacggtcacg cgggcctgga agcagatctc gagatccagc
       61 aattgatgct ggattcgctg cgtctgagcg gcctcgataa agtgcgcctc gacctgtgcc
      121 acgccggtgt tttgtctgcg ctgctggagc tggaaccggc tgcggcggcg ctcggtgaag
      181 cgctgttcga cgcgctcggc gctaaggacg tgccgcgcct gaacgaactc acggccaagc
      241 tcggcgatgt cacccgggac gcgttgcgcg cgttgccatc gctgtatggc gacgcttcgg
      301 tactcgacga agcgcgcccc cggttgccga atctcccggt gatcggccgg gcgctggacg
      361 atctcgcgtt cttggctgcg caagcgaacg gcgccgagct gatgatcgat ctcgccgatc
      421 tgcgcggtta cgcgtaccac agcggcgtga tgttctcggc gtacgttgac ggcgtgccga
      481 acgcggtggc gcgaggcggt cgttacgacg atgtcggcca agcctacggc cgtgcgcgcc
      541 cggcgacggg tttttcgctc gacctgcgcg aagtcgcccg tatttctccc gtcgatgccc
      601 gcggcagcgc ggtcctcgcc ccgtggaagc atgacgaacc gctgctcgcg gcagtcgcgc
      661 aactgcgtga tgcgggtgaa gtggtgattc aggcgttgcc cggccacgac catgatctcg
      721 acgagttcgc gttcgatcgc gtactggtcg agcgggatgg aaagtgggtc gtagaggccc
      781 gttcctagcg gttttgcggt ttgccggtgc gttttttatc gacacatagc ggcaaaccgc
      841 agacaaaatt ctgccagatc cgatcgatgc aaaatcgata cgcgttcgca aataccggga
      901 aaaactcgga accttccgcg aacataggta aaatgctttt ttaaccagct atcaaattga
      961 catgtctgcc agcgcagtga atgtgaaccc ggggcgcaac gtcgtcgtgg tcggcaccca
     1021 gtgtggtgat gaaggcaagg gcaagatcgt cgactggttg acggaccacg cccagggcgt
     1081 cgtgcgcttc cagggcggcc acaacgccgg ccacacgctg attatcggcg gcaagaaaac
     1141 catccttcga ctgattccgt cgggcatcat gcgcgccggc accgcctgct acatcggcaa
     1201 tggtgtcgtg ttgtcgccgg aagcgctctt caaggaaatc ggcgagctgg aatcggtggg
     1261 tgtggacgtc cagaagcgtc ttttcatctc cgaagccgcc aacctgattc ttccgtatca
     1321 catcgctatc gaccaggccc gcgaagcgcg gcgcggcgcg gcgaagatcg gtaccaccgg
     1381 acgcggtatc ggccccgcgt atgaagacaa ggtcggtcgc cgcggcttgc gcgtgcagga
     1441 tctgtacgac cgcgaagtat tcgctgagcg cctgcgcgaa acgctcgatt tccacaattt
     1501 cgtgctgacc ggttatctgg gcgcccctgc ggtggattac caggaaacgc tggacaccat
     1561 gttcggctac gccgagcgcc tcgcgcccat ggtgaccgac gtctcgcgcc gtctctatga
     1621 cgaaaaccac gctggccgca acctgctgtt cgaaggtgcg caaggcacgc tgctcgacat
     1681 cgatcacggc acgtatccgt acgtcacgtc
//
LOCUS       DATGBK010000579         1539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_76462, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000579 DATGBK010000000
VERSION     DATGBK010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76462"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..1046
                     /locus_tag="VKJ77_08310"
     CDS             36..1046
                     /locus_tag="VKJ77_08310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HMC45310.1"
                     /translation="MHSIQLALWAVITLVAVALVFDFMNGFHDAANSIATVVSTGVLK
                     PQQAVAFAAAFNVIAYFIFHLKVAATVGKGTIDPAIVDQYVIFGALVGAIGWNIITWH
                     YGIPSSSSHALIGGLVGSAWAKSGWGSLNMDGLLKTVSFIFISPVLGFVLGSLFMLIV
                     SWMYFRTPPSKVDRRFRRWQLISAGLYSLGHGGNDAQKTIGVIWMLLIAAGYASATAD
                     APPIWVIGGCYLSMGLGTLFGGWRIVRTMGQKITKLKPVGGFCAESGGAITLFVASFL
                     GIPVSTTHTITGAIVGVGATQKFSAVRWGVAGNIVWAWILTIPASAVMAAAAWWLGHR
                     FL"
     gene            complement(1108..>1539)
                     /locus_tag="VKJ77_08315"
     CDS             complement(1108..>1539)
                     /locus_tag="VKJ77_08315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45311.1"
                     /translation="VLKQMAERLKANPKAEPGAVVNIIGMGGKFASDIHIAGGAANAA
                     LMLATVGLAHHYAKLGIRINAINPGATLTERVEESLALEAQRLGVTRDEALALSQAKV
                     PLGRYAKPEEIADVALFLASRRASYVSGAIIPMDGVSAPLI"
BASE COUNT          241 a          464 c          473 g          361 t
ORIGIN      
        1 gcctgatttc agccgcgcca ctcactcgat aaacgatgca ttcgattcaa ctcgccctct
       61 gggctgttat tacgctcgtc gcggtcgcac tcgtgttcga cttcatgaac ggcttccacg
      121 acgccgccaa ctccatcgca acggttgtgt ccaccggcgt gctgaaacct cagcaggccg
      181 tggcgttcgc cgccgcgttc aacgtcattg cgtatttcat cttccatttg aaggttgccg
      241 ccaccgtcgg taaagggacg atcgacccgg ctatcgtcga tcaatatgtg atcttcggtg
      301 cgcttgtcgg ggcgatcggc tggaacatca tcacgtggca ctacggcatt ccgtcgagtt
      361 cgtcgcacgc gctgatcggc ggtctggtcg gctcggcgtg ggcgaagtca gggtggggct
      421 cgttgaatat ggacggcttg ctcaagactg tctcgttcat tttcatctcg ccggtgcttg
      481 gcttcgtgct ggggtcgctg ttcatgctga tcgtgtcgtg gatgtatttc cgcacgccac
      541 cctccaaggt ggaccggcga ttcagacgct ggcagcttat atcggctggg ttgtatagcc
      601 ttgggcacgg cggcaacgac gcgcagaaga ccatcggcgt gatctggatg ctgctgattg
      661 cggcggggta tgcgtcagcg acggcagacg cgccgccgat ctgggtgatc ggcggatgtt
      721 atctgtcgat ggggctcggt acgctgttcg gcggctggcg catcgtgcgc actatgggtc
      781 agaagatcac gaagctcaaa ccggtcggcg ggttttgcgc ggaatcgggc ggggcgatta
      841 cgctgttcgt tgcgtcgttt ctcggtattc ctgtgtcgac cactcacacg atcacaggcg
      901 cgattgtcgg cgttggtgcg acgcagaagt tcagtgcggt gcgctggggc gtggcaggga
      961 acattgtctg ggcctggatc ctgaccattc cggcgtctgc cgtgatggcc gccgctgctt
     1021 ggtggctcgg acatcgcttt ctttgaacgt gcagctcgcg ggtgactgcc tgggtgactt
     1081 gtttttaagt cacccgagct tcgtgcgtca gatcagcggc gcgctgacac cgtccatagg
     1141 aatgatcgcg cccgatacgt aactcgcccg acggctcgct aagaacagcg caacgtccgc
     1201 gatctcctcg ggtttcgcgt atcgcccaag cggcaccttt gcctggctta gcgccagggc
     1261 ttcatcgcgt gtgacaccca gtctctgcgc ctcgagcgct aacgattcct ccacacgttc
     1321 cgtcaacgtc gcgcccggat tgatcgcgtt gatgcggatg cccagcttcg cgtaatgatg
     1381 cgcgagaccg acggttgcca gcatcagcgc cgcattcgcc gcgccgcccg cgatatgaat
     1441 atcgctcgcg aacttcccac ccatcccgat gatgttcacc accgcgcccg gctcggcttt
     1501 ggggttcgct ttcagccgtt cggccatttg cttcagcac
//
LOCUS       DATGBK010000580         2110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_99641, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000580 DATGBK010000000
VERSION     DATGBK010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99641"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2110
                     /locus_tag="VKJ77_08320"
     CDS             <1..>2110
                     /locus_tag="VKJ77_08320"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HMC45312.1"
                     /translation="QLHERVLEAHRHDALPFAQLVEALQPERSIGQTPLFRVMFNHTR
                     GQHTDISVAGLRVSEVANDVPTARFDLVLNAVERDDELRLSFNYVADLFDEAIVKQML
                     EHYVEILGQASAVEDQPLAQIALSRNGTHGATDRPVASAAFEPVGPWFSRQAAKHPLA
                     PALHCEGDRLAYGELERWTNRIARRLNRLGVLPDECIGLCVERSTALAAGVLGVLKSG
                     AAFVPLDPAYPLERLAAMLDDAGIVRVLVDQTGLERLGELLRGREPIHVADDRPLQGD
                     TEADTAFAAPLHSEQLAYVIYTSGSTGRPKGVAINHGTLSQHLDDFIGTYRIGAADKV
                     LQSSTINFDVALHELLPALLSGGQVEMRGPQPWDPETTSRHLIEEKVTFARIPTAYWQ
                     QWLREPPPAASLAALRQITVGGEGLPGDALRQWRNGPLGSIRLDNLYGPTETTIACMY
                     RETRAQDEEQAIVSIGGPYPSRSVQVCDADGNEAPAGALGELCIGGHTLARGYLGRAA
                     LTAERFIPDPEGPSGSRLYRTGDLCRRRSDGSIDFLGRLDQQVKLRGHRIELGEIEAV
                     LREAPGVQAAAAALRGEGDAKRLVGYVVGDADDGVVRRILQSRLPGYMVPSALVWMEH
                     LPLMQNGKVDRAALPEPGVEAARQRMAPRTELEAALLAIWQSVLGREGLSMTDNFFDV
                     GGHSLLLMRVASRIRHELGRD"
BASE COUNT          360 a          620 c          722 g          408 t
ORIGIN      
        1 cagcttcacg agcgcgtgct cgaagcgcat cgtcacgatg cattgccgtt cgcccaactt
       61 gtggaggcgt tgcagcctga acgcagcatc gggcagacgc cgttgttccg ggtgatgttc
      121 aatcacacgc gtgggcagca tacggacatc agtgtggcgg gactgcgcgt gtcggaagtg
      181 gcgaacgacg tgcccacagc acgcttcgac ctggtgctga atgccgtcga gcgcgacgat
      241 gagctgcggt tgtcgttcaa ctatgtggcg gacctgttcg acgaagccat cgtcaagcaa
      301 atgcttgagc actacgtcga gatcctgggg caagcgagtg cagtagagga ccagccgctg
      361 gcgcagattg cactaagccg caatggcacg catggcgcga cagaccggcc cgtagcaagc
      421 gcagcattcg aaccggtcgg tccgtggttt agccgacagg cggcgaaaca tccgctagcg
      481 cctgcgttgc attgtgaggg tgaccgtctt gcttacggcg aactcgagcg ctggacgaat
      541 cgtattgcac gccgcttgaa ccgcctgggc gtccttcccg atgaatgcat tggcctgtgc
      601 gtggaacgct cgaccgcgct ggccgcgggc gtgctgggcg tgctgaaatc gggcgccgca
      661 ttcgtgccgc ttgatccggc ttatccgctc gaacgactcg ccgcgatgct cgacgatgcc
      721 ggcatcgtgc gagtgctggt cgaccagacg ggtcttgagc gtctgggcga attgctgcgc
      781 ggccgcgagc cgattcatgt ggccgatgac cggccgctgc aaggtgacac cgaagcagat
      841 accgcgttcg ccgcaccgct tcattcggag cagctcgcct atgtgatcta cacctcgggt
      901 tctacggggc gtccaaaggg cgtagcgatc aaccatggca ccttgagcca gcatctggac
      961 gacttcatcg gcacgtatcg cattggtgcg gccgacaagg tgctgcaatc atcgacgatc
     1021 aacttcgatg tcgccctgca cgagctcttg cccgccctgt tgagcggcgg acaggtcgag
     1081 atgcgtggtc cgcagccttg ggaccccgag accacgagcc gtcatctgat cgaggagaag
     1141 gtgacgttcg cgcgcatccc gacggcgtac tggcagcaat ggttgcggga gccgccgccg
     1201 gccgcttcgt tggcagcatt gcggcagatt acggtgggtg gtgaaggatt gcctggcgac
     1261 gcgttgcggc aatggcgcaa cggtccgctt gggtctatcc ggctcgacaa cctgtacggt
     1321 cctactgaaa cgaccatcgc ctgcatgtac cgcgaaaccc gtgctcagga cgaggagcag
     1381 gcgatcgtat cgattggcgg tccttatccg tcgcgttcgg tgcaggtctg cgatgccgac
     1441 ggcaacgaag cgcctgccgg tgcgctgggc gagttgtgca tcggtgggca tacgctggcg
     1501 cgcggatatc tcgggcgtgc cgcgctgacc gccgagcgtt ttattcctga tcctgagggt
     1561 ccgtccggca gtcggcttta tcggacggga gatctgtgcc gccgccgttc agacggcagc
     1621 atcgacttcc tcgggcgctt ggatcaacag gtgaaactgc gcggtcatcg tatcgagctg
     1681 ggcgagatcg aagcagtgct gcgcgaagcg cccggcgtgc aggcggcggc agccgcgttg
     1741 cgcggcgaag gcgatgcgaa acggctcgtg ggctacgttg tcggcgacgc cgatgatggg
     1801 gtggtccgcc gtatcctgca gagtcgtctg ccgggctata tggtgccgtc ggcactggta
     1861 tggatggagc acttgccgct gatgcagaac ggcaaggtgg atcgcgcggc gttgcccgaa
     1921 cccggcgttg aagcggcgcg tcagcgcatg gcgccgcgta ctgaactgga agccgcgttg
     1981 ctcgcgatct ggcagtcggt gctcggccgt gaaggtctga gcatgaccga taacttcttc
     2041 gatgtcggtg gtcactcgtt gctgctgatg cgggtggcct cgcgcattcg tcatgaactc
     2101 ggccgcgatg
//
LOCUS       DATGBK010000581         1747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_30739, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000581 DATGBK010000000
VERSION     DATGBK010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30739"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..579)
                     /locus_tag="VKJ77_08325"
     CDS             complement(<1..579)
                     /locus_tag="VKJ77_08325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HMC45313.1"
                     /translation="MSDRKELADPPEAVPVKLGGRTELALSRALKVLLVLVAVVYFAV
                     AGIYLTLRYAVLPQIDAFRPRIEQMVSSKIHAQMRIGRVTAKWSGFEPSFDIDNLRID
                     AADGTPGLAVPHASATVAWRSLIGPIPLLSNLTVDGPDVVISRAADGTFSVAGVPIQA
                     KHTGNDAFMTWLLRQQAIVLRDGTLRWHDGERD"
     gene            786..>1747
                     /locus_tag="VKJ77_08330"
     CDS             786..>1747
                     /locus_tag="VKJ77_08330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamine synthetase
                     adenylyltransferase/deadenyltransferase"
                     /protein_id="HMC45314.1"
                     /translation="MTDAVLLSASASHYAARVYAARPELPADIAEWSKAPIRRAWIEA
                     RLNALCDACSARSASGRLDEAALKTALRRLRIEVFCTVMERDLAGLAPVAEVTGAMTD
                     LAELTIQRALAVLSADLELTFGEPRGPDGQRLTLGVVGMGKLGGRELNVSSDIDLIFV
                     YEEDGETAGGERAALSTQEYFTRLGRKLIGALAEVTEDGYVFRVDMRLRPNGDAGPIA
                     CGLGMLEEYFYVQGREWERYAWIKGRLVSEGESEAAQRLVKLLDALAKPFIYRRYLDY
                     GVISAIRALHVQIRQEAQRRASMRPDKADDIKLGRGGIREIEFSA"
BASE COUNT          329 a          498 c          596 g          324 t
ORIGIN      
        1 gtcgcgctcg ccgtcgtgcc agcgcagcgt gccgtcgcgc agcacgatgg cttgctgtct
       61 gagcagccat gtcatgaacg cgtcgttgcc cgtgtgtttt gcctggatcg gcacgccggc
      121 tacgctaaag gtcccgtcgg cggcgcgcga gatgacgacg tcggggccat caacggtgag
      181 attcgagagc agcgggatgg gacctatcag cgagcgccac gcgactgttg cgctggcatg
      241 cggcacggca aggccgggcg tgccgtcagc ggcatcgatc ctgagattgt cgatatcgaa
      301 tgaaggctcg aagcccgacc acttcgccgt gacgcgtcca atgcgcatct gcgcatggat
      361 cttcgacgag accatttgct cgatgcgcgg cctgaacgca tcgatctgag gtaacacggc
      421 gtaacgcagc gtgagataga tcccggcgac cgcgaaatag accacggcga ccagcaccag
      481 aaggactttg agcgcccgcg acaaagcgag ctcggtgcga ccacctagct tcacgggtac
      541 agcttcaggt gggtcggcga gttcctttcg gtcggacatg ctgcggcggg tcggcgatat
      601 ggtaggtttt cgagatttga cgttgaaatg taacacagcg cgcagtgcaa aaaactgcgg
      661 gaacacgcta cgatgcggcc gctaagccgc gccggatggc gttctgcgca cctcgcgcca
      721 atttgcgcaa aagccccggc gcacagccgg acttgattgt gagcaatgac tgagcccgac
      781 ctttcatgac cgacgccgtt ttgctgagtg ccagcgcttc ccactatgcc gcgcgcgtgt
      841 atgccgcgcg tcccgaattg ccggctgata tagccgaatg gtcgaaggcg ccgattcgcc
      901 gcgcctggat agaagcgcgg ctgaacgccc tgtgtgacgc gtgttcggcg cgttcggcca
      961 gcggccggct cgatgaagcc gcgctcaaga ccgcgctaag gcggctgcgc atcgaggtct
     1021 tctgcacggt gatggaacgc gatctcgcgg gcctcgcgcc tgttgccgaa gtcacgggcg
     1081 ccatgaccga ccttgccgag ttgactatcc agcgagcgct cgcggtgtta tcggcggatc
     1141 tggagctcac attcggtgag ccacgcgggc ctgacggaca gcgcttgacg ctgggtgtgg
     1201 tcggaatggg gaaactcggt ggacgtgaat tgaacgtgtc gtcggatatc gatctgatct
     1261 tcgtctatga agaagacggt gagacggcgg gcggcgaacg cgcggcgtta tccactcagg
     1321 aatattttac gcggctcggt cgcaagctca taggcgcatt ggccgaggtg acggaagacg
     1381 gttatgtctt tagagtcgat atgcggttgc ggccgaatgg cgacgccggg ccgatagctt
     1441 gcgggctcgg catgctcgag gaatatttct atgtgcaggg ccgcgagtgg gagcggtatg
     1501 cgtggatcaa ggggcggctg gtctccgagg gcgagagcga agcggcgcaa cggttggtaa
     1561 agctgctcga cgcgctcgct aagccgttca tctaccggcg ctatctcgat tacggcgtga
     1621 tcagcgcgat tcgtgcactg catgtgcaga tcaggcagga agcgcagcgg cgcgcgtcga
     1681 tgcgaccgga caaagccgac gacatcaagc tcggccgcgg cggcattcgg gagatcgagt
     1741 tcagcgc
//
LOCUS       DATGBK010000582         2157 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_261939, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000582 DATGBK010000000
VERSION     DATGBK010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2157
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261939"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..1907
                     /locus_tag="VKJ77_08335"
     CDS             252..1907
                     /locus_tag="VKJ77_08335"
                     /inference="COORDINATES: protein motif:HMM:NF012870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HMC45315.1"
                     /translation="MGTRREITAAVVDRYRSAGRMDKGRILDELCAVTGWHRKHAVRA
                     LASHVRISPEARRQRSPTYGATIRDALVALWEASDRICGKRLKVMIPTLLPSLERHGR
                     LKLDQAGRALVLGVSAATIDRLLVETKIAAAGGKRRRVGFYSAVRREVPIRTFNDWHD
                     PPPGFCEVDMVAHGGTSVAGSFIQTLTMVDVATGWTECMPLLTRESGLVVRAMERAQN
                     LFPWLIRGADFDNDSAFMNDVVVPWCRAQKIEVTRSRAYKKNDQAFVEQKNGAVVRRL
                     VGYGRFDGVETTRVLERLYAASRLHTNFFQPSFKLKDKRREGAKVIKRYHVPATPYAR
                     ALAHPKLSKGVKRRLRELYRTLDPVALLAEMRDAQTELGTRVGARAGKLAAAASPPAP
                     ATNAAAFAKGLGNDVHLGELRIIHRRMRKPYKKRMRMPSMLDPHLADIERWLAAEPGL
                     TALAILGRLAEHSPEKFGPPQHTIVQRLLRLLRRNAAEVIIPRMAGGTAPAVIGDPGT
                     GGGAACDGHSATPPVPPILRAMTQPRTGRQSELYPSSESNILR"
BASE COUNT          421 a          627 c          712 g          397 t
ORIGIN      
        1 ttcactgctg gtgcggtgag gtctgacaag cccataatat tttccgtccc gacggcggcg
       61 ggtcgtagtt agacgcctca agggtcgaga ttgtcccaag gcatccaagc ctatatatgt
      121 gaatcggcgt ggcctttgac cccggggcgg ggcgcattgc ctcatcaata atgttaccgg
      181 agaactgacc gtcaggagtg ggacggcgat accgaatcgg atcggtgtcg ccgatggcag
      241 gacggatcag catgggtacg cggcgcgaga tcacggcggc ggtggtagac cgctatcgat
      301 cagcggggcg gatggataag gggcgcattc tcgacgaact ttgcgcggtg acgggctggc
      361 atcgcaagca tgcggttcgg gcgcttgcca gccatgtcag aatttcgccg gaggcccggc
      421 ggcagcgaag tccgacctat ggcgctacta tcagggatgc tctggtggcg ctgtgggaag
      481 cctcagatcg aatctgcggc aagcgtctca aggtgatgat tccgacgttg ttgccttcgc
      541 tggagcggca tggccggctc aagctcgacc aggccggtcg agcgctggtg ctcggcgtca
      601 gcgcagccac gattgatcgc ctgctggttg agaccaaaat cgctgcggct ggtggtaagc
      661 ggcggcgggt tggcttttat tcggcggtgc ggcgtgaagt cccgatccgg acgttcaacg
      721 actggcacga tccgccgccg gggttctgtg aggtcgacat ggtggcccat ggcggcacat
      781 ccgtggctgg ctcgtttatc cagacattga cgatggtcga tgtcgccact ggttggaccg
      841 agtgcatgcc gttgttgacg cgcgagagcg ggctcgttgt gcgggccatg gagcgcgcac
      901 agaacctgtt tccctggctc attcgcggcg ccgacttcga caatgacagc gcgttcatga
      961 acgatgtcgt cgtgccctgg tgtcgcgcgc aaaagatcga ggtgacgcgt tcgcgcgcct
     1021 acaagaagaa tgatcaggct ttcgtcgagc agaagaacgg cgcggtcgtc cggcgacttg
     1081 tgggatacgg tcgcttcgat ggcgtcgaga cgacgcgcgt gctggaacgc ttgtatgccg
     1141 catcgcggct gcacaccaac ttcttccagc cgtccttcaa gttgaaggac aagcgacgcg
     1201 agggcgcgaa agtgatcaag cgctatcatg ttccggccac gccctatgcg cgcgctctgg
     1261 cgcatccgaa gttgagcaaa ggcgtcaaac ggcgtcttcg agagctttat cgcacgctcg
     1321 atcccgtggc cctgctggcc gagatgaggg acgcccagac tgagctcggc acgcgcgtcg
     1381 gcgcccgagc gggcaagctc gcggcagcag ccagtccacc ggctccggca acgaacgcag
     1441 cagcgttcgc gaaggggctc ggcaatgatg tgcatctggg ggagctgcgc atcatccatc
     1501 ggcggatgcg caagccatac aaaaagcgca tgagaatgcc atcgatgctc gatccgcacc
     1561 tcgccgacat cgagcgctgg ctcgcggccg aacccggtct gaccgcgctg gcaatcctcg
     1621 gtcgcctcgc cgaacactcc cccgaaaagt tcgggccgcc gcagcacacc atcgtgcagc
     1681 gcttgttgcg attgctcaga cgaaatgcag ccgaggtgat catccctcgc atggccgggg
     1741 gtacggcacc ggccgtcatt ggtgatcccg ggactggggg cggcgctgcg tgtgatgggc
     1801 actccgcgac gcccccagtc cctccgatcc tgcgagcaat gacgcaacct cggaccggcc
     1861 gacagtcgga actatatccg tcaagcgaaa gtaacatcct caggtgaggc aatacgagat
     1921 gccgaaattg cgcgctccgg cgcatcatac cgtttgattc tcgtcctccc ggcgaccgcc
     1981 gggacgaccc ggaaaggatt tcaagccaaa tctttcaatc gcaaaagcgc tagacagtat
     2041 ttatccaacg ggttaatttc gacgcgtaag aacaagacga gagagatttc agggagcgga
     2101 aacgtggccg agccgaaagg cgagggcggc gtatcgaagg cgctgaatgc ggcgtgg
//
LOCUS       DATGBK010000583         2911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285057, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000583 DATGBK010000000
VERSION     DATGBK010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285057"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VKJ77_08340"
     CDS             complement(<1..188)
                     /locus_tag="VKJ77_08340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45316.1"
                     /translation="MAIEAEHRAMAQFPPEGMKTERVVLRPASSQYTGALLIYRLANR
                     AHLDHWEPLREDSFFTMQA"
     gene            418..621
                     /locus_tag="VKJ77_08345"
     CDS             418..621
                     /locus_tag="VKJ77_08345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45317.1"
                     /translation="MSRRFMIVERIAFALLTMSAVADAGFISYEKSPNFRDNLHEIVR
                     VSKEVSLMYPATGNDPWMPLASS"
     gene            complement(660..1583)
                     /locus_tag="VKJ77_08350"
     CDS             complement(660..1583)
                     /locus_tag="VKJ77_08350"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45318.1"
                     /translation="MPDEINDLRLFAQMVDAGSLSAAARRTDGSTAAMSRRLAALEKR
                     LGVRLVTRTSRRFDLTVEGALFHERAVAILHAVDDAEAEISAQARVPQGLLCIGAPSE
                     IGRKQIAPLIEGFSDRYPEVEVRLVLSDIGLDVIDDNLDVALRIGLPADTGVIAKKLL
                     SSRRIVCAAPAYLARHGTPETLADLAAHDCLRLVRGQRVFDRWLFVEDGRRREIPVRG
                     TLSTASGEVLHDWALKGRGLALKALWDIDDDLSAGRLIECLAPYHCDEIELYAVFANR
                     RHLSPRVRVFLDFVQEALGGAALDRKTSAAG"
     gene            1706..2671
                     /locus_tag="VKJ77_08355"
     CDS             1706..2671
                     /locus_tag="VKJ77_08355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HMC45319.1"
                     /translation="MKALRFNQHGDPSVLFTSDLPVPAPSGDEAVVQVFAASINPSDV
                     KNVQGRMSQTTLPRTPGRDYSGVVIGGPAEWLGAQVWGSGGDVGFTRDGTHAEQVVVP
                     VASLRRKPVNLTFEEASAIGVNFITAWCAVVEAAQLQAGESIVIIGLGGVGGAASQIA
                     KRIGAKVVGVARGAAATNPYVDAMVDSRAPDAIARIREAANGGAAVVFDTVGGSMFET
                     ALHMLKVGGRLVEISASDRREVTFNLADFYHNESRLIGVDTLKRDLVASAQMLEALRP
                     GFEDGSYKAPAIAQTFALEDAQAAYQAVAEGTKGRVVLTPRTKRS"
     gene            2676..>2911
                     /locus_tag="VKJ77_08360"
     CDS             2676..>2911
                     /locus_tag="VKJ77_08360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45320.1"
                     /translation="MQRWRLAPQSILFAVFLGALAALPPISIDMALPALGNIANTLHA
                     SASQAGLTLSLFMAGFAVGPIVYGPLSDARGRKPT"
BASE COUNT          579 a          897 c          879 g          556 t
ORIGIN      
        1 gcttgcatgg tgaagaagga gtcttctcgc aacggttccc agtggtcgag gtgcgcgcgg
       61 ttggcgagcc gatagatcag cagcgcgccg gtgtactgac tgctggccgg acgcagcacg
      121 acacgctccg ttttcatgcc ctctggcgga aattgtgcca tcgcgcggtg ctcggcttcg
      181 attgccatag gcggtaactg cccctcttga tcgtgatcaa caccaatgca atgacgagac
      241 aactacgata cagcgacgaa ttaaagccag cttttcgtat gatgaaaaga ggcaataatt
      301 ccctaagcag tgcgtcggac tgtgtcgttt tccgtcacca gcacccaatt ttgactggta
      361 aaagataggt gaaaaccctt ataattccca aagtgaaaga ctcaaggaac tttggaaatg
      421 tcccgccgct ttatgattgt tgagcgcatc gctttcgcgt tgctgaccat gtccgccgtt
      481 gctgatgctg gctttatcag ctacgaaaag agcccgaact tcagggataa cctccatgaa
      541 atcgttcgcg tgagcaaaga ggtttcgctc atgtatccgg cgaccggcaa cgacccgtgg
      601 atgccgctgg cttccagcta acgtgcctgg aagcactcaa gctgaagtct gaagcgcgct
      661 tatcctgcag ccgaggtttt ccggtcaagc gctgccccgc caagcgcttc ttgtacgaaa
      721 tcaagaaaga cccgcactcg cggcgataaa tgccgccgat tcgcaaacac cgcatataac
      781 tcgatttcat cgcagtgata gggcgcaagg cactcaatca gcctgcccgc gctcaaatcg
      841 tcgtctatgt cccacagcgc cttcagcgca aggccgcggc ccttaagcgc ccagtcgtgg
      901 agcacctccc cgctagcggt cgaaagcgtg ccgcgcaccg gaatctctcg gcggcggccg
      961 tcttccacga ataaccatct gtcgaaaaca cgctgcccgc gcacgagccg caggcaatca
     1021 tgcgcggcga gatcggcgag cgtttccggc gtcccgtgcc gcgccagata cgctggcgcc
     1081 gcgcacacaa tgcgccggct cgacagcagt ttcttcgcaa tcacgccggt atctgcaggc
     1141 aagccgatgc gcaacgccac gtcgagattg tcgtcgatca catccagtcc gatatcggac
     1201 agcacaagcc gcacctcgac ctccggatac cgatccgaga acccttcgat cagcggcgcg
     1261 atctgcttgc gcccaatctc cgacggcgcg ccgatgcaca acaaaccctg cggcacgcgg
     1321 gcctgagcgc tgatctcggc ctcggcatcg tcgaccgcgt ggaggatagc gactgcacgc
     1381 tcatgaaaca gtgcaccttc caccgtcaga tcgaagcgcc gcgacgtccg cgtgacgagg
     1441 cgcacgccca ggcgcttctc cagcgcggcc agccgccggc tcatggcggc ggtcgatccg
     1501 tcggtccggc gtgccgccgc cgagaggctg ccggcgtcca ccatctgtgc aaacaggcgc
     1561 aggtcgttga tttcatcggg catcgattag gtccatcatg attccgtcca tctttccact
     1621 tgacgcaacg attctatgcg gacggatgcc tttttgccac gggcagacgc ggcaataatg
     1681 cggacatgac aacggaggaa tcatcatgaa agcactgcgc ttcaaccagc acggcgatcc
     1741 atcggtcctt ttcaccagcg atttgcccgt gcctgcgccg tccggtgatg aagccgtcgt
     1801 tcaggtcttc gcggcatcga tcaatccaag cgacgtaaag aacgtgcaag ggcggatgag
     1861 ccagacgacg ctgccgcgta cgcccggccg cgactattcg ggcgtagtca tcggcggtcc
     1921 tgccgagtgg ctgggcgctc aggtgtgggg ctcgggcggc gacgtaggat ttacgcgcga
     1981 cggcacgcac gctgaacagg tggtcgtacc cgttgcaagc ctgcgtcgca aaccggtcaa
     2041 tctgacgttc gaggaggcat cggcgattgg cgtgaatttc attacggcct ggtgtgccgt
     2101 ggttgaggcg gcgcagttgc aggccggcga gagcatcgtg attatcgggc tcggcggcgt
     2161 gggcggggcg gcgtcgcaga tcgcgaaacg gattggcgcg aaggtggtgg gcgtggcgcg
     2221 cggtgcagcc gcaacgaatc cctacgtcga tgcaatggtc gactcgcgag cccccgatgc
     2281 catcgcacgc attcgtgaag cggcgaacgg cggcgcggct gtcgtattcg ataccgtcgg
     2341 cggatcgatg ttcgaaacgg ccttgcacat gctgaaggtg ggcggacggc tggtggagat
     2401 atcggcgtcg gaccgtcgcg aagtcacctt caacctcgcg gatttttatc acaacgagag
     2461 ccgcctgatt ggcgtcgata cattgaaacg cgatctggtt gcgtccgcgc agatgctgga
     2521 agcgctgcgt cccggcttcg aagacggcag ctacaaagcg ccggccatcg cgcaaacctt
     2581 cgcgctggag gacgcgcaag ccgcctacca ggcggtggcg gagggcacaa aaggccgcgt
     2641 cgtgctgaca ccgcgaacga agcggagttg acgcgatgca acgctggcga ctcgcgccgc
     2701 agtccatcct gttcgctgtt tttctgggcg cgctcgcggc attgccgccc atttccatcg
     2761 atatggcgtt gcccgcgctc ggcaatatcg caaacacgtt acacgcgagc gcgagtcagg
     2821 ccgggctgac gctgagtctc ttcatggcgg gttttgcagt cggtccaatc gtttacggcc
     2881 ctctttccga tgcacgtggc cgcaagccta c
//
LOCUS       DATGBK010000584         1989 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_308114, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000584 DATGBK010000000
VERSION     DATGBK010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308114"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..620)
                     /locus_tag="VKJ77_08365"
     CDS             complement(<1..620)
                     /locus_tag="VKJ77_08365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012338492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase
                     N-terminal domain-containing protein"
                     /protein_id="HMC45321.1"
                     /translation="MYDLLKTIDDPAALRALDRHELKPLAEELRAYVLDSVSQTGGHL
                     SSNLGTVELTIALHYVFDTPHDRIVWDVGHQTYPHKILTGRRDQMKTLRQAGGISGFP
                     RRSESKYDTFGTAHSSTSISAALGMAIASKLQGDNRYSIAVIGDGAMTAGMAFEAMNN
                     AGVADDVPLLVILNDNDMSISPPVGALNRHLARLMSGRFYAAARAGV"
     gene            complement(747..1631)
                     /locus_tag="VKJ77_08370"
     CDS             complement(747..1631)
                     /locus_tag="VKJ77_08370"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004337 - geranyltranstransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate synthase"
                     /protein_id="HMC45322.1"
                     /translation="MTFDQWMRASLDRVETALEHYLPGTDIAPAKLHEAMRYAVLGGG
                     KRVRPLLCHAAGELTGAGSQQLEAASAALEMIHVYSLVHDDMPAMDDDALRRGKPTVH
                     VQYDEATALLVGDALQSQAFVALTADNGLSAAQQASLTRELALASGSVGMAGGQAIDL
                     ESVGRKLSRPELETMHRKKTGALLRAAVRMGALCGEAPDAAAMNALDAYAAAVGLAFQ
                     VVDDILDVTADSATLGKTAGKDAKDDKPTYVSIIGLDASRELAAQLGRDAHAALAPFG
                     PRAGRLGELADLVVNRVH"
     gene            complement(1628..1951)
                     /locus_tag="VKJ77_08375"
     CDS             complement(1628..1951)
                     /locus_tag="VKJ77_08375"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HMC45323.1"
                     /translation="MAKTATQEGSAEGSASAENAPLPDNYETALAELEGLVARMEGGA
                     LSLEESLAAYRRGAALVGFCQQQLEKVEQQVRVLDGDTLKPLPAEVQRATQGAGTTAD
                     NGDDL"
BASE COUNT          349 a          647 c          602 g          391 t
ORIGIN      
        1 acaccggcgc gcgccgccgc ataaaaacgc cccgacatca agcgcgccag atgccgattc
       61 agcgcgccca ccggcggtga aatcgacatg tcgttgtcgt tcaggatcac gagcagcggc
      121 acgtcatcgg ccacgcctgc attgttcatg gcctcgaacg ccatgccggc ggtcatcgcg
      181 ccatcgccga tcacggcgat cgaataacgg ttgtcgccct gcagtttgct ggcgatcgcc
      241 atgccgagcg ccgccgaaat ggacgtgctg gaatgcgcgg tgccaaaggt gtcgtatttc
      301 gattcgctac ggcgcgggaa gccggaaatg ccgccggcct gacgcagcgt cttcatctga
      361 tcgcgacggc cggtcaggat cttgtgcgga taagtctgat gaccgacgtc ccagacaatg
      421 cgatcgtgcg gggtatcgaa gacgtaatgg agcgcgatcg tcagttcgac cgttccgaga
      481 ttcgacgaca aatgcccgcc cgtctgcgac acgctgtcga gcacgtaggc acgcagctct
      541 tcggccagcg gttttagttc gtggcggtcc agggcgcgca aggcggccgg atcgtcgatg
      601 gttttcagca agtcgtacat cgtcgtccca tttaggaaaa ctggcggaag ccgttcggtt
      661 gttacccggc actgcttgag acagcatgcg taaggcgcgt aagttgcatc aggcacgccc
      721 gccggtcccg cgttttatcg tatgtttcag tgcacccggt tcacaaccag gtcagctaat
      781 tccccgagcc gaccggcacg cgggccaaaa ggcgcgagcg cggcgtgcgc atcgcggccc
      841 agttgtgccg ccagttcgcg cgatgcatcg agtccgatga tcgacacgta ggtcggcttg
      901 tcatccttcg cgtccttacc cgccgtttta cccagcgtag cggagtcggc cgtgacgtca
      961 agaatgtcgt ccaccacctg gaacgcaagt ccgactgcgg ctgcgtaggc gtccagcgca
     1021 ttcatggcgg ctgcatcagg ggcttcgcca cagagtgcgc ccattcgcac ggccgcgcgc
     1081 agcaatgcac cggttttctt gcgatgcatg gtttcaagtt ccgggcgcga cagcttgcgg
     1141 cccacgcttt ccagatcgat tgcctggccg cccgccatgc cgaccgaacc gcttgccagc
     1201 gccagttcgc gcgtaaggga cgcctgctgc gccgcgctca ggccgttgtc cgccgtcagc
     1261 gcaacgaaag cctgcgactg caaagcgtcg ccgaccaata atgccgtcgc ttcgtcatat
     1321 tgcacatgta ccgttggttt tccgcgacgc aaagcgtcgt cgtccatggc cggcatgtcg
     1381 tcatgcacca gcgaatacac atgaatcatc tcgagcgccg cgctcgccgc ttccagttgc
     1441 tgcgagcccg cgccggtcag ctcacctgcg gcgtggcaca acagcgggcg aacccgcttg
     1501 ccgccgccga gcaccgcgta acgcatggct tcatgcagtt tggcgggtgc gatgtccgtt
     1561 ccaggcaaat aatgctccag cgccgtttcc acgcggtcaa ggctcgcgcg catccattga
     1621 tcgaaagtca taagtcgtcc ccgttatctg ccgttgtgcc ggcgccctga gtggcgcgct
     1681 ggacctcggc gggcagcggt tttagtgtgt cgccgtcgag cacgcgaact tgctgctcga
     1741 ccttctctag ttgttgttga caaaagccga cgagcgcggc gccgcgccga taagccgcca
     1801 gcgattcctc aaggctcagc gcgccgccct ccatgcgcgc aacaagcccc tccagttcgg
     1861 ccagcgccgt ttcgtaattg tccgggagcg gcgcgttttc cgcgctagcc gagccttcag
     1921 ccgagccttc ctgcgttgcg gtcttcgcca tgaatcgtgg gtgtaatgtc ggattttggg
     1981 aaacaagtc
//
LOCUS       DATGBK010000585         1643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_99715, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000585 DATGBK010000000
VERSION     DATGBK010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99715"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..666
                     /locus_tag="VKJ77_08380"
     CDS             <1..666
                     /locus_tag="VKJ77_08380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HMC45324.1"
                     /translation="ASRYQNLSEAGAGTTQEQQHASSTLAEQLAQQAHDRAALTSTEQ
                     NLNVLNTQRAKAAGALARAEAALEQAKLNLSYTEIHAPVDGKVGRRSARVGAFVTTGT
                     PLLAIVPLSQAYVVANFQENQLTNMRPGQAVRIKVDTFPGVVIRGHVDSLAPATGLSF
                     APIEPDNATGNFTKVVQRVPVKITIDRGQQATSRLSVGLSVETEVAVGRRADMRIAGA
                     DAK"
     gene            663..>1643
                     /locus_tag="VKJ77_08385"
     CDS             663..>1643
                     /locus_tag="VKJ77_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC45325.1"
                     /translation="MTASEFSIRTPALAVLVCFALAGCLLGPNFERPQSDTPGVFNRT
                     RTAQASSKAVESGFSQEWWTLFNDPMLDSLEQQLTDANLDVAAASARLRQSRAEQRIA
                     GAAEYPTLDGNASYDRERGSPTGILSLLGVSPTGSQPQSAAGNTPLGVAPLPGSMGSP
                     AYNLYQFGFDASWEVDIWGRARRGVEAATALSDASYEDRNAVLLSARAELARDYVQLR
                     DTQALLQIARQNLDIARDTTKLTEKRVREGVVTNLDVDNAAAQAESIESLIPTFESRC
                     ETTINAIGVLLAKEPGELQQMLAEPRDVPALPDQVPIGVPSELLQRRPDIR"
BASE COUNT          331 a          518 c          516 g          278 t
ORIGIN      
        1 gcctcgcggt accagaacct ctcggaagcc ggcgcaggaa cgactcagga gcaacagcac
       61 gcgtccagca cgctcgccga gcagctcgcg cagcaggccc acgatcgggc cgcgctgacg
      121 tcgactgagc agaacctgaa cgtgttgaat acccaacgcg ctaaggcggc cggcgcgctc
      181 gcacgcgccg aggcagcgct cgagcaggca aagctcaatc tgtcttatac agagattcac
      241 gcgccggtcg acggcaaggt tggacgacgc tccgcgcggg tcggcgcatt cgttacaacc
      301 ggcacgccac tgcttgcgat cgtcccgctt tcgcaagcgt atgtcgtcgc caactttcag
      361 gaaaaccagc tcaccaacat gcgccccggc caggccgtgc gtatcaaggt tgacaccttc
      421 ccgggcgtcg tgatccgggg gcacgtcgat agtctcgcgc cggcgacagg cttgagcttc
      481 gcgcctattg agcccgacaa cgcaacgggc aacttcacca aggtcgtcca gcgcgtgcct
      541 gtcaagatca caatcgaccg gggacagcag gctacgtcca ggttgagcgt gggcttgtcg
      601 gtcgaaacgg aggtcgccgt tggcaggcgt gctgatatgc ggatcgcagg agcagacgcg
      661 aaatgactgc gagcgaattc tcgatccgca cgccggcgct cgcggtattg gtgtgcttcg
      721 cactcgcggg ctgtctgctc ggcccgaact tcgaacgtcc gcagtcggat acgcctggcg
      781 tgtttaaccg aacccggact gcgcaagcat caagcaaagc agtcgaatcc ggattcagcc
      841 aggaatggtg gacgctgttc aatgacccaa tgctggactc actggaacaa caactgaccg
      901 atgcgaacct cgacgtagcg gcggcgtcgg cgcgtctgcg gcaaagccgt gcggagcaac
      961 ggattgccgg tgccgcggaa tatccgacgc tggacggcaa cgcgtcttat gaccgcgagc
     1021 gcggaagtcc aaccggcatc ctctcgttgc tgggtgtcag cccgacggga agtcagccgc
     1081 agtcggcggc gggcaacacg ccgcttggcg tggcgccgtt gccgggttcc atgggttcgc
     1141 cggcttacaa cctctatcag ttcggtttcg acgcatcctg ggaggtcgac atctggggac
     1201 gagctcgacg cggtgttgag gcagcgaccg ctttgtccga tgcttcatac gaggaccgca
     1261 acgcagttct attgtcggcg cgcgccgaac tcgcgcgaga ctacgttcag ctgcgtgaca
     1321 cgcaggcatt actgcagatc gcaaggcaga acctggacat cgcccgcgac acaacgaaac
     1381 tcacggaaaa gcgggtacgt gaaggcgtcg ttacgaattt ggacgtggac aacgccgccg
     1441 cacaggctga gtccatcgag agcctgatcc cgacgttcga atcgcgttgc gagaccacga
     1501 tcaatgccat cggcgtgcta ctggcgaagg aacctggcga attgcagcag atgcttgccg
     1561 agccgcgtga tgttcccgca ctccctgacc aagtgcctat cggggttccg tcggaactgc
     1621 tgcagcgccg ccccgacatc cga
//
LOCUS       DATGBK010000586         1623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285065, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000586 DATGBK010000000
VERSION     DATGBK010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285065"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..373)
                     /locus_tag="VKJ77_08390"
     CDS             complement(<1..373)
                     /locus_tag="VKJ77_08390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC45326.1"
                     /translation="MNAEKSRLRITLVCNTAWAIHTYRRGLLRMLIERGVEVSVIAPR
                     DRTFAPLEEMGCRCVELPVASKGTNPRDDLKTLVALVREYRATRPHMVFHYTIKPNIY
                     GSIAAKLAGVPSIAVTTGLGYV"
     gene            complement(432..1247)
                     /locus_tag="VKJ77_08395"
     CDS             complement(432..1247)
                     /locus_tag="VKJ77_08395"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC45327.1"
                     /translation="MPTTPMSSPMLDDVTVLIPVFNAQHDLDRTLASFCERAPVRVLI
                     VDDGSLPPIVAPSIENLAIDVLRMPRNGGIELALQTGVAALAERGVKYAARIDAGDLA
                     TPYRLEKQRAYMEAHPDTAALGMWTHVVSMEGVPLFDLRPPAEPALIRRVMLLRSCFS
                     HPTIMLRVTAAIEAGNYRAEYRAAEDLDLILRLMQDHDCANLPEFGVYYELNERGISA
                     TKRRTQTLSTLRLQLKYMRLTNLPDWIGIAKNIAHLMLPYGLLRTLKTRLFGA"
     gene            complement(1274..>1623)
                     /locus_tag="VKJ77_08400"
     CDS             complement(1274..>1623)
                     /locus_tag="VKJ77_08400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018442316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45328.1"
                     /translation="AALMIGGAIVLDLLAGFIISRVFGPAYTESISIFRWAVWLSVPA
                     GIEAIGNLVVLKYQAKFVLLAKWLLALAVAFVVNLIAIPRMGSYGALTGLAAGYLAAA
                     SVNFYYIRFRLRV"
BASE COUNT          327 a          485 c          511 g          300 t
ORIGIN      
        1 acacataacc cagcccggta gtgacggcga tggacggtac gcccgcgagt ttcgctgcga
       61 tcgaaccgta aatgttcggt ttgatagtgt agtgaaacac catgtgcggc cgggtggcgc
      121 ggtactcgcg aaccagcgcg acgagggtct tgaggtcatc gcggggattg gtgcctttcg
      181 acgcgaccgg cagctcgacg catcggcagc ccatttcctc gagcggcgcg aaagtccggt
      241 cgcgcggcgc gatcacggag acttccacgc cgcgttcgat cagcatccgc agcaagccgc
      301 gcctgtaggt gtggatcgcc cacgcggtgt tgcagacgag ggttatgcga aggcgggatt
      361 tctctgcgtt cattcgatgg ttattaaagg gagcgccgaa ccgggagctt gtttcaaggg
      421 ctaaaaacca gtcatgcgcc gaacaagcgc gttttcagcg tacgcaggag gccgtaaggc
      481 agcatcagat gcgcgatgtt tttcgctatg ccaatccagt cgggcaggtt cgtcaaacgc
      541 atgtatttca attgcagccg cagtgtagac agtgtttgtg tacggcgttt cgtcgcgctg
      601 atgccgcgct cgttgagttc gtaatacacg ccgaactccg gcagattcgc gcagtcgtgg
      661 tcttgcatca gacgcaagat caggtcgagg tcctcggccg cgcgatattc cgcgcgatag
      721 ttgccggctt caatcgcggc ggtgacgcgc agcattatcg tcggatggga gaagcaggag
      781 cgcagcagca tgacgcggcg aatcaatgct ggttcggcgg gcgggcgaag gtcgaacagc
      841 ggcacgcctt ccatgctcac cacatgcgtc cacatgccga gcgccgccgt gtccggatgc
      901 gcttccatat aagcgcgctg cttttccagc cgatacggcg tcgccagatc gcccgcatca
      961 attcgcgccg cgtacttgac accccgttcc gccagcgcgg ccacgcccgt ttgtaacgcc
     1021 agctcgatac cgccattgcg cggcatccgc agcacatcga tcgcaagatt ttcaatcgat
     1081 ggcgcgacga tgggcgggag gctgccgtca tcgacgatca gcacgcgcac cggtgcacgc
     1141 tcgcagaacg atgcgagcgt tcggtccagg tcgtgctggg cgttgaacac cgggatcagc
     1201 acggtgacgt cgtcgagcat cggagatgac atgggcgtgg tgggcatggt gggcgtggtg
     1261 gatgaagaag ccgtcatacc cgcagcctga agcggatgta gtagaaattg accgatgccg
     1321 ccgcgagata gcccgccgcc agtccggtca gcgcgccgta gctgcccatg cgcggaatcg
     1381 cgatcaggtt caccacgaaa gccaccgcca gcgccagcag ccactttgcg agcaacacga
     1441 atttcgcctg gtatttaagc acgacgaggt tcccgatcgc ttcgatcccc gccggcaccg
     1501 aaagccatac cgcccagcgg aaaatgctga tggattcggt ataagccggt ccgaacacgc
     1561 gcgagatgat gaaacccgcg agcagatcca gtactatcgc gccgccgatc atcagcgctg
     1621 ccg
//
LOCUS       DATGBK010000587         3797 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_53783, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000587 DATGBK010000000
VERSION     DATGBK010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3797
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53783"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VKJ77_08405"
     CDS             <1..372
                     /locus_tag="VKJ77_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45329.1"
                     /translation="LLVISRVLMLLAVYPAFAFLGNHPSMTALCIVSGLLAVFVAGQI
                     VPVLVMIPELFPKHVRATGIALTYVVSASFFGGFSPFIASWLVARTGNPLAPAWYVAA
                     ACAISLVPVIWLKDRTGQSLP"
     gene            403..1938
                     /locus_tag="VKJ77_08410"
     CDS             403..1938
                     /locus_tag="VKJ77_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014619775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HMC45330.1"
                     /translation="MSHNTELISRSAVELRRMIGSKEISPVELLEACIERIEAINPAV
                     NAVTATCYPEARIAAKTAERQVLNGEKLGLLHGLPLGVKDLEDTAGLLTTYGSPISRG
                     NVPSRDVLLVERLRAAGAILVAKTNVPELGAGANTRNPVWGATGNPFNPELNAGGSSG
                     GAAAALACDMLPVCTGSDTGGSLRIPASKCGVVGFRPSPGLVPNSRKLLGWTPISVVG
                     PMGRTVAEACLQLAATAGISATDPLGYESDPLSFATPQALDLSTLRIGWTEDFDSCDV
                     DENIRQIFRERMAALKPMVHTCEPVRFDLGDVHRCFDVIRAESFVAGLADAYARDPNT
                     LGPNTRANYEMGASMTLADSAWAQAEQTRIFKRFQSAFAEYDVILSPTTPVSPFPWQE
                     LYAAQIGGRAQQNYYRWLALTYVVTLTTHPAISIPCGVDHASMPFGLQIVGPFHDDHK
                     TLAVAHALEQAFEASPVLCRPRPDLSKLTQPTISLKSIVTSPPIFNTAGETTTGTTGT
                     STV"
     gene            1942..2295
                     /locus_tag="VKJ77_08415"
     CDS             1942..2295
                     /locus_tag="VKJ77_08415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC45331.1"
                     /translation="MSNEIKRLQTNARMSQVVIANGYVHLAGQVPDNAQESITEQASN
                     ILARIDTLLASAGVDKTRLVTANIWLSDPKHFAEFNAVWDAWIPEGHAPTRACVQALL
                     MKPGCDVEVAVTALA"
     gene            2314..3546
                     /locus_tag="VKJ77_08420"
     CDS             2314..3546
                     /locus_tag="VKJ77_08420"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC45332.1"
                     /translation="MKFDTVVLGGGIVGVSIAVHLQKRGRSVALVDRKPPGNETSFGN
                     AGLIQREGVYPYAFPRALSALLKYSRNTALDVRYHPNAMLKLAPFLWRYWRNSHPSRH
                     AVIARWYATLIEHCVTEHRMLAAEAGASTLLRPSGWIKVFRTSAKQDSEMAVVQRWQR
                     EFGVSFDALDPTRLRQTEPDLDPSLKGALRYTAADSVSDPNALVTAYAQYFDKLGGRF
                     FIGDATTLKDHWTVNTQAGLLSARTAVIAMGPWSGDITKRLGYNLPLAVKRGYHMHYA
                     ARSDAHLNHPVLDVENGYLIAPMSRGIRLTTGAELALRDAPKTPAQLDAVEPIARGLF
                     PLEQRLDDEPWMGRRPCTPDMMPIIGAAPKHDDLWFAFGHAHHGLTLGAITGRLIAEL
                     VTGEKPLVDLHPFRADRF"
     gene            complement(3566..>3797)
                     /locus_tag="VKJ77_08425"
     CDS             complement(3566..>3797)
                     /locus_tag="VKJ77_08425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="choline/ethanolamine kinase--aminoglycoside
                     phosphotransferase"
                     /protein_id="HMC45333.1"
                     /translation="TETEIIETYFGRVDPQISARVVVHKALADLKWATWSMIQNEMST
                     LDFDYFKYGAWKFMRARSVIDGPQWSRLLKEV"
BASE COUNT          724 a         1205 c         1127 g          741 t
ORIGIN      
        1 ttgctcgtga tctcgcgtgt cctcatgttg ctggccgtct atccggcgtt tgcgttcctc
       61 ggcaaccacc cttcgatgac cgctctatgt attgtgtcgg gcttgctcgc ggtattcgtt
      121 gccggccaga tcgtgccggt cctcgtgatg atccccgagc tgtttccgaa gcatgtcagg
      181 gcgacaggta ttgcgttgac ctacgtggta agtgcatcgt ttttcggcgg cttctcgccg
      241 ttcatcgcga gctggctggt ggcgcgaacc ggcaatccgc tcgcgccggc atggtatgtc
      301 gccgcggcct gcgcgatctc gcttgtgccg gtcatctggc tgaaggaccg caccggccag
      361 tcacttccgt gaagctgagc aggacaagtt taaggagact tcatgagtca caacactgaa
      421 ttgataagca gatccgccgt tgaactgcgc cgcatgatcg gctcgaaaga gatatctccg
      481 gtcgagttgc tcgaggcctg catcgaacgg atcgaagcga tcaacccggc agtgaacgcg
      541 gtcacggcca cgtgttaccc cgaagcgcgc atcgcggcta aaaccgccga gcgccaggtc
      601 ttgaacggcg agaaactcgg cttgctgcat gggttgccgc tcggcgtgaa ggacctggaa
      661 gatacagcag gcctgctcac gacctacggg tcgccgatct cccgcggcaa cgtcccgtcc
      721 cgcgatgtcc tgctcgtcga acgcctgcgt gcagcgggcg cgatcctggt cgccaagacc
      781 aacgtaccag agctcggcgc gggcgcgaat acgcgcaacc cggtttgggg cgcgaccggc
      841 aacccgttca atcccgagct gaatgcaggc ggttcatcgg gtggcgcagc ggccgcgctg
      901 gcctgcgaca tgctgccggt ctgcaccggc tcggataccg gcggatcgct tcgcataccg
      961 gcatcgaaat gcggcgtggt cggcttccgg ccatcgcccg gactcgtgcc gaattcacgc
     1021 aagctgctgg gctggacgcc gatatccgtc gtcggaccca tgggcaggac cgttgctgaa
     1081 gcctgcctgc aactcgctgc gaccgcgggc atttcggcta ccgatccact tggctacgag
     1141 tccgatccct taagtttcgc cacgccgcaa gcgctggacc tgagcacgtt gcgcatcggc
     1201 tggacagagg atttcgacag ttgcgacgtc gatgaaaaca tccgccagat ttttcgcgag
     1261 cgcatggcgg cactcaagcc gatggtccat acctgcgagc cagtgcgctt cgatctcggc
     1321 gatgtccacc gttgcttcga cgtgatccgc gcggagagtt tcgtcgcggg cttggcggat
     1381 gcctacgcac gcgacccgaa cacgctcgga cccaacacgc gggcgaacta cgaaatgggc
     1441 gcaagcatga cgcttgccga cagcgcctgg gcgcaagccg aacagacgcg catcttcaag
     1501 cgcttccagt ccgcgttcgc cgagtacgac gtgatcctct cgccgactac gccggtctcg
     1561 ccgttcccgt ggcaagagtt gtatgctgcg cagattggcg gacgcgcgca gcagaattat
     1621 tatcgatggc tggcgctcac ctacgtggtc acgctgacca cgcatccggc aatctcgata
     1681 ccgtgcggcg tcgatcacgc cagcatgcca ttcggactgc agatcgtcgg gccgtttcat
     1741 gacgatcaca agacgctcgc cgttgctcat gcgctggagc aagcgttcga agcatcgccg
     1801 gtcctgtgcc gcccgcggcc cgatttatca aagctgacgc aaccgacaat ctcgctgaaa
     1861 tcgatcgtca cttcgccacc cattttcaat accgccggtg aaaccacgac tggcactacc
     1921 ggcacatcga ccgtctgaac catgtcaaac gaaatcaaac gtcttcaaac gaacgcgcgg
     1981 atgagtcaag tagtgatcgc gaacggttat gtccatcttg cggggcaggt cccggacaac
     2041 gcccaagaat cgatcactga acaggcgagc aatatcctcg cgcgaatcga tacgttgctg
     2101 gcgtctgccg gcgtagacaa gacccggctg gtcacggcca acatctggct gagcgacccg
     2161 aagcacttcg ccgaattcaa tgccgtctgg gatgcgtgga ttcccgaggg ccatgccccc
     2221 acgcgcgcct gcgttcaggc actgctgatg aagcccggct gcgacgtcga agtcgccgtg
     2281 accgcgctcg cctgaaccgc caaggaaacg catatgaaat tcgataccgt cgtgctcggc
     2341 ggcggcattg taggtgtatc aatcgcggtg catctgcaaa agcgcggccg ctcggtcgcg
     2401 ctcgtcgacc gcaagccccc gggcaacgag acctcgttcg gcaacgcggg actcatccag
     2461 cgcgaagggg tttatccgta cgcgtttccg cgtgcgctga gcgcactctt gaaatattcg
     2521 cgcaacaccg cgctcgatgt ccgctatcac cccaacgcca tgctcaagct cgcgccgttt
     2581 ctctggcggt actggcgcaa ctcgcatccg tcgcggcacg ctgtgatcgc acgatggtac
     2641 gcgacgctga tcgagcattg cgtgacggag catcggatgc ttgctgccga agcgggtgca
     2701 agcacgttgc tgcgtccgag cggctggatc aaggtgttca ggacgagtgc aaaacaagat
     2761 tcggaaatgg ccgtcgtgca gcgttggcag cgcgagtttg gcgtgagctt cgatgccctc
     2821 gatccaacgc gtttgcgcca gaccgaacct gatctggacc cttcgttgaa aggcgcgctt
     2881 cgctacacgg cggccgattc tgtcagcgac ccgaatgcgc tggtcacggc ctatgcacag
     2941 tatttcgaca aactgggcgg gcggtttttt attggcgatg cgactacgct gaaggaccac
     3001 tggactgtca atacgcaagc gggtttgcta agcgcgcgaa cggccgtgat cgcgatgggc
     3061 ccttggtccg gcgatatcac caagcggctt ggctacaacc tgccactggc cgtcaagcgc
     3121 ggttaccaca tgcactacgc ggcaagatcg gacgcgcacc tgaaccatcc ggtactcgat
     3181 gttgaaaacg gttacctgat cgcgccgatg tcgcgcggta tccgcctgac tacgggcgcg
     3241 gaactcgcgc ttcgcgacgc acccaagaca cccgcgcagc tggacgccgt tgaaccgatc
     3301 gcacgcggtt tgttcccgct ggaacagcgc ctcgacgatg aaccctggat gggacgccgt
     3361 ccctgcacac ccgacatgat gccaatcatt ggcgccgcgc cgaagcatga cgacttgtgg
     3421 ttcgcattcg ggcacgcgca tcacggactg acgctcggtg cgattacggg gcgccttatt
     3481 gcggaattgg tgacgggcga aaaacctctc gtcgatttgc accctttcag ggccgaccga
     3541 ttctgaacgc gacgcttcaa cgcgctcaca cttccttcaa gaggcggctc cattgcgggc
     3601 cgtcaatgac cgagcgcgcc cgcatgaatt tccatgcacc gtatttgaag taatcgaagt
     3661 ccagcgtcga catctcgttc tggatcatcg accacgttgc ccacttcagg tcggccaacg
     3721 ccttgtgcac gacaaccctc gcgctgatct gcggatcgac gcggccaaag tatgtctcga
     3781 tgatctccgt ttcggtt
//
LOCUS       DATGBK010000588         3151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_6870, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000588 DATGBK010000000
VERSION     DATGBK010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3151
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6870"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..>3151
                     /locus_tag="VKJ77_08430"
     CDS             38..>3151
                     /locus_tag="VKJ77_08430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="error-prone DNA polymerase"
                     /protein_id="HMC45334.1"
                     /translation="MDTTFSMLPAYAELFAFSNFTFLHGASRGEELVARAAQLGYAGL
                     AITDECSLAGVVRAHVEAKNLNFPLVIGSYFKLVNADLSPAFGLILLATNRNGYGNLS
                     ELITIARMRSKKGAYLLTPNDLARPDKEFAHLRGMPDCLAILVPDFPAKQTALDAQIE
                     WLDTTFPQRAWVGLTLHQRALDDMHRGTVEHVAAFHKVPVVATGNVVMHVRSRKPLQD
                     TMTAIRIGKPVSECGYDLAPNAEQHLRSRLRLANLYPEYTIGETLNVLTRCTFSLDDL
                     RYDYPDEIVPAGYTHAAYLRQETYIGAHRRFPLGIPHKVQAQIEHELELIEYMKYEAY
                     FLTVYDLVRFARGENILCQGRGSAANSAVCYCLGVTEVDPARSNMLFERFISKERGEP
                     PDIDVDFEHQRREEVIQYIYRKYGRDRTAIAAAVSTYRPRGALRETGKALGVDPQIVD
                     RVAKSHQWFDTSHDLLQRFTESGLDPENTLIQSWASLAAQLLNFPRHLSQHSGGFVIS
                     REKLTRLVPIENAAMVDRSVIQWDKDDLEALGLLKVDVLALGMLSAIRRTLDLVSEKR
                     GERLEMQDIPPDDKATYDMISQADTIGVFQIESRAQMSMLPRLRPKEFYDLVIEVAIV
                     RPGPIQGGAVHPYLRRRQGLEPVKYPSEGLKIALERTLGVPIFQEQVMQIAMIAAGFT
                     AGEADALRRAMAAWKRKGGLGKYYDRIVNGMIERGYEKAFAEAIFEQIKGFGEYGFPE
                     SHAASFALLVYVSSWLKRHEPAAFLAAMLNSQPMGFYSPSQLVQDAKRHGVVVFPADV
                     TVSGWDSVLEYPDECRGEDSRPAVRLGLSLLRGMRDGAAERIGTARCVRQFESVGDLA
                     QRAQLDRHDLQALAAANALTSLAGNRREALWQSVAAVPDKDLLNDARVEDVTPLLGAP
                     SEADDIVSDYKATGLSLGRHPLELLRPALLEHRLMSAATLRGYRDGRLARGCGLVTVR
                     QRPGTAKGVMFVTIEDETGNVNVIVWPSLLEKQRREALGSTLLAVYGTWQCEGEVRHL
                     VAQRLVDM"
BASE COUNT          602 a          816 c         1014 g          719 t
ORIGIN      
        1 gcgctggttt ctccacggtc tgtttggatg atgaatcgtg gataccacct tttccatgct
       61 gcccgcgtat gcggagcttt tcgcgttttc caacttcacg ttccttcacg gagcatcgcg
      121 tggagaggag ttggtcgcgc gggcggcgca actcggttat gccggcttgg cgatcaccga
      181 tgaatgctcg ctcgcgggtg tcgtgcgcgc gcatgtggag gcgaagaacc tgaattttcc
      241 gcttgtgatt ggctcgtatt tcaagctcgt caacgcggat ctttcgccgg ccttcggact
      301 cattttgctg gcgacgaacc gcaatggata cggcaatttg tccgagctca tcaccattgc
      361 ccgcatgcgg tcgaaaaaag gcgcgtacct gctcacgccg aacgatctgg cacggcccga
      421 taaagagttc gcacatctgc gcggcatgcc ggattgtctc gcgatcctgg tgcccgattt
      481 ccccgcgaag cagactgcgc tcgatgccca gatcgaatgg ctcgacacca cgtttcctca
      541 acgcgcgtgg gtggggttga cgctgcacca gcgcgcgctc gatgacatgc atcgtgggac
      601 cgtcgagcac gtggccgcgt ttcataaggt gcctgtggtg gcaaccggca acgtggtgat
      661 gcacgtgcgc tcgcgcaagc cgctgcagga caccatgacg gccattcgta tcggcaaacc
      721 ggtatcggaa tgtggttacg atctcgctcc gaatgccgaa caacatctgc gctccaggtt
      781 gcggctcgcg aatctctatc cggaatacac gattggtgaa acgctcaacg tgctcacgcg
      841 ctgcaccttt tcactcgatg atttgcgtta cgactatccg gacgagatcg tgccggccgg
      901 ttatacccat gccgcttatt tgcggcagga aacctatatt ggcgcgcatc ggcgttttcc
      961 gctcggcatt ccgcacaagg tgcaggcgca gatagaacat gaactcgagt tgatcgagta
     1021 tatgaaatac gaggcgtatt tcctgacggt ctatgacctc gtgcgttttg cccgcggcga
     1081 aaacattctt tgccaggggc gtggttccgc ggcgaactcc gccgtgtgtt attgcctcgg
     1141 tgttaccgaa gtggacccgg cgcgcagcaa catgctgttc gagcggttca ttagcaagga
     1201 gcgcggcgag ccgccggata ttgatgtcga cttcgagcat cagcggcgcg aagaagtcat
     1261 ccaatacatc tatcggaaat atgggcgtga tcgcacggcg attgcggcgg cggtgtcgac
     1321 gtatcggccg cgtggtgcat tgcgtgaaac gggcaaggcg ctgggtgttg atccgcagat
     1381 tgtggatcgc gtcgcgaagt cgcatcagtg gttcgatacc agtcatgacc tgctgcaacg
     1441 cttcaccgaa tccgggcttg atccggagaa tacgttgatt caatcgtggg cttcgctggc
     1501 tgcgcaatta ctgaattttc cgcggcatct gtcgcagcat tcggggggat ttgtgatcag
     1561 ccgggagaaa ctgacgcggc tggttcctat cgaaaatgcg gctatggtgg atcgcagcgt
     1621 gatccagtgg gacaaggatg atctggaagc gctggggctt ttaaaagtcg atgtgctcgc
     1681 gctcggcatg ctgtcggcca ttcgacgcac gcttgatctt gtctcggaga aacgcggcga
     1741 gcgcctcgag atgcaggaca ttccgcccga cgataaagcg acctacgaca tgatctcgca
     1801 ggcggacact atcggcgtgt ttcagatcga gtcgcgtgcg cagatgtcga tgttgccgcg
     1861 actacggccg aaggagtttt acgatctggt gatcgaggtc gcgatcgtac ggcccggtcc
     1921 gattcagggt ggcgcggtgc atccatattt gcggcggcgt cagggtttgg agccggttaa
     1981 atatccgagt gaggggttga agatcgcact ggaaagaacc ttgggcgtgc cgatctttca
     2041 ggaacaggtc atgcagatcg cgatgatcgc agccggtttt actgccggtg aagccgatgc
     2101 attgcggcgg gcaatggccg cgtggaaacg caaaggcggt ctggggaaat attatgaccg
     2161 gattgtgaac ggcatgatcg agcgcggtta tgaaaaggcc tttgcagaag caatttttga
     2221 gcagatcaag ggcttcggtg aatatggttt tcctgaaagc catgcggcga gttttgcgct
     2281 gcttgtgtat gtcagcagtt ggttgaaacg acatgaacca gcagcgtttc ttgcggccat
     2341 gctgaactcg caaccgatgg gtttctactc cccttcgcaa ctcgttcagg atgcgaagcg
     2401 ccatggcgta gtcgtgtttc ccgccgatgt gacagtgagc ggctgggatt cggtgcttga
     2461 atatccggat gagtgtcgcg gtgaggacag caggcctgct gtgcggctgg ggttatcgct
     2521 gcttcgcggg atgcgggatg gtgcggctga gcgtattgga acggcgcgtt gtgtgcgtca
     2581 gttcgagagc gtgggtgacc tcgcgcaacg ggcgcaactt gatcggcatg atctgcaagc
     2641 gttggctgct gccaacgcgt tgacgtcact tgctggaaat cgacgggaag cgttatggca
     2701 atccgtggcc gcagtgcccg acaaggacct gctcaacgat gcacgcgtgg aagatgtcac
     2761 gccgctgctc ggcgcgcctt ctgaagccga cgatattgtc agcgactata aggctacggg
     2821 tctgtctctt ggacgtcatc cgcttgaact gctgcgtccg gcgttgcttg agcatcggtt
     2881 gatgtcggct gctacattgc gtggttacag ggacggccgg ttggcacgcg ggtgcggact
     2941 cgtgactgtg cgtcaacggc ctggaacagc gaagggtgtg atgttcgtta cgattgaaga
     3001 tgagaccggt aacgtcaacg tcatcgtatg gcccagtctg ctggagaagc agcgccgcga
     3061 ggcgctcggt tcaacgttgt tggcggtgta cggtacgtgg caatgcgagg gcgaggttcg
     3121 acatctcgtc gcgcagcggc tggtggatat g
//
LOCUS       DATGBK010000589         2545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_53793, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000589 DATGBK010000000
VERSION     DATGBK010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53793"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..347
                     /locus_tag="VKJ77_08435"
     CDS             <1..347
                     /locus_tag="VKJ77_08435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HMC45335.1"
                     /translation="TAASLVAHNRRLAMPASLDGGITSGLQEDHLCHATPAALKALEI
                     IANAERILAIELLAATQAYDLQPAELSRAPKTDAIYRSVRAVVSRYRDDRPLAGDIAA
                     AWAFVHDANPGF"
     gene            630..2312
                     /gene="hutU"
                     /locus_tag="VKJ77_08440"
     CDS             630..2312
                     /gene="hutU"
                     /locus_tag="VKJ77_08440"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019658453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HMC45336.1"
                     /translation="MKNHNPRPLRAPRGTELTCKSWLTEAPYRMLLNNLDPEVAENPD
                     KLVVYGGIGRAARNWECLDKILETLQRLESDESLLVQSGKPVGVFKTHADAPRVLIAN
                     SNLVPKWATWEHFNELDRKGLFMYGQMTAGSWIYIGSQGIVQGTYETFVEAARQHFNG
                     DWKGRWILTAGLGGMGGAQPLAATLAGAVSLNIECDQTRIDFRLRTRYVDKQAKDIDH
                     ALELIKQHTAAGDAVSIALLGNAAEVLPELVRRAKAGGIKPDLVTDQTSSHDLINGYL
                     PAGWSLEKWRAASLDASQHAELKAAAQRSCAQHVQAMLDFHAMGIHAVDYGNNLRQVA
                     FDDGVKNAFDFPGFVPAYIRPLFCEGKGPFRWVALSGDPEDIYKTDAKLKELFPHNAG
                     MNRWLDMARDRIAFQGLPARICWLGLGERHVAGLAFNEMVKSGELKAPIVIGRDHLDT
                     GSVASPNRETESMKDGTDAVSDWPLLNALLNTAGGATWVSLHHGGGVGMGYSQHAGMV
                     IVADGTDAAQKRLARVLVNDCASGVMRHGDAGYEQAIECAKNFGLDLPFITT"
     gene            2315..>2545
                     /locus_tag="VKJ77_08445"
     CDS             2315..>2545
                     /locus_tag="VKJ77_08445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012328849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HutD family protein"
                     /protein_id="HMC45337.1"
                     /translation="MAAAFSIIRAADLNAVPWKNGGGATREIAASPPGAAFDAFDWRV
                     SVADVSVAGAFSVFEGIDRVLTLIEGTEMVLID"
BASE COUNT          493 a          768 c          796 g          488 t
ORIGIN      
        1 acacggcggc gtcgctggtt gctcacaacc gccgccttgc gatgcctgcg agcctggatg
       61 ggggcattac ctccggcttg caggaggacc atctgtgtca cgcgacaccg gctgcgttga
      121 aggctttgga aatcatcgcc aatgctgagc ggatcctggc tatcgagctg ctggctgcga
      181 cccaggcgta tgacctccaa ccggccgagc tgtcgcgcgc gcctaaaacc gatgcaattt
      241 atcgaagcgt ccgtgctgtt gtttcccgat accgggacga ccggccatta gcaggcgata
      301 tcgctgcagc atgggcgttt gtccacgacg caaaccccgg gttttaatcc accggggctc
      361 ttgtatagac agatttgtcg ctttccgttg tcgtcgatcg caccgtattt acacgggatc
      421 gacggcggcg tcccaagctg tatcgggcta ccagcctcgt tcaagtaaac ccctacccga
      481 atcgacctgc acaccgcttg cgctctgatt tgttttaatt caaacttgta tatacaactc
      541 gccgaccaag cttcatcgct gcccaaaacg ccccgatgaa ttggctgcaa gataccgaat
      601 gttcaccatc ccgtccgagg agtgctttga tgaaaaacca caacccgcgt cccctgcgcg
      661 caccgcgcgg cactgagctt acgtgcaaga gctggctcac cgaagcacct tatcggatgc
      721 tgctgaacaa cctggaccca gaggtcgccg agaaccccga caagctggtg gtctatggcg
      781 gtataggccg cgctgcccgc aactgggaat gcctcgataa aatcctcgaa accctgcagc
      841 gcctggaaag cgacgaatcg ctgctggttc agtccggcaa gccggtcggc gtgttcaaga
      901 cgcacgcgga cgcgccgcgc gtgttgatcg cgaactccaa cctcgtgccg aaatgggcga
      961 cgtgggaaca cttcaacgaa ctcgaccgca agggtctgtt catgtacggc cagatgacgg
     1021 ccggaagctg gatctacatc ggtagccaag ggattgtgca aggtacgtac gaaaccttcg
     1081 tcgaagctgc acgacagcac tttaacggcg actggaaggg ccgctggatc ctgaccgcag
     1141 gtctgggagg catgggcggc gcgcagccgc tggcggcgac gctggcgggc gcggtatcgc
     1201 tgaacatcga gtgcgaccag acgcgtatcg atttccgtct gcgcacgcgt tacgtcgata
     1261 aacaagcgaa ggacatcgat cacgcgctcg aactgatcaa gcagcacacg gctgccggcg
     1321 acgctgtgtc gatcgcgttg ctgggcaacg cagccgaagt gctgccggaa ctcgtgcgcc
     1381 gcgccaaggc gggcgggatc aagccggacc tggtcacgga tcaaacctcg tcgcacgatc
     1441 tgatcaacgg ttatctgccg gctggctgga gcctcgaaaa gtggcgcgcg gcgtcgctcg
     1501 atgcctccca gcacgctgaa ctgaaggccg ccgcgcaacg ttcgtgcgcc cagcacgtcc
     1561 aggccatgct cgatttccac gcgatgggca ttcacgccgt cgattacggc aacaacctgc
     1621 gtcaggtcgc tttcgacgac ggcgtcaaga acgcgttcga ttttcccggc ttcgttccgg
     1681 cgtacatccg cccgttgttt tgcgaaggca agggtccgtt ccgctgggtc gcgttgtcag
     1741 gcgatccgga agacatctac aagaccgatg ccaagctgaa agagctgttc ccgcataacg
     1801 caggcatgaa ccgctggctc gacatggcgc gcgatcgcat cgcgttccag ggtttgccgg
     1861 cgcggatttg ctggctgggt ctgggtgagc gtcacgtcgc cggtctcgcg ttcaatgaaa
     1921 tggtcaagag cggcgagctg aaagcgccga tcgtgatcgg ccgcgatcac ctggatacgg
     1981 gctcggttgc cagcccgaat cgcgagacgg aaagcatgaa ggacggcacg gatgccgtct
     2041 ccgactggcc gctgctcaac gcgctgttga acaccgcggg cggcgcaacg tgggtcagcc
     2101 tgcatcatgg cggcggcgtg ggcatgggtt actcgcaaca tgctggcatg gtgatcgttg
     2161 ccgacggcac cgacgcagcc cagaagcgtc ttgcgcgcgt gctggtgaac gactgtgcgt
     2221 cgggcgtgat gcgtcatggc gatgccggct acgagcaagc cattgaatgc gcgaagaact
     2281 tcggcctcga tctgccgttc atcacaacct gatcatggcg gcagccttca gcattattcg
     2341 cgcggccgat ttgaatgccg tgccgtggaa gaatggcggc ggcgcgacgc gcgagattgc
     2401 cgcgtctccg ccaggtgctg ccttcgatgc cttcgactgg cgtgtgagcg tcgcggatgt
     2461 atcggtggcg ggggcgttct cggtgttcga gggcatcgac cgcgtgctga cgttgatcga
     2521 gggcacggag atggtgctca tcgat
//
LOCUS       DATGBK010000590         1561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_331144, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000590 DATGBK010000000
VERSION     DATGBK010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331144"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            362..>1561
                     /gene="istA"
                     /locus_tag="VKJ77_08450"
     CDS             362..>1561
                     /gene="istA"
                     /locus_tag="VKJ77_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HMC45338.1"
                     /translation="MPAPRINMRKIRDVLRLKLDAKLSHEQIAGALGISKGVVTKYVG
                     LAAAAGLDWPTVQDADEITLERRLLVAPQKPRNHVQPDYGRLHQELRRKGMTLMLLWE
                     EYRAEHADRQTYAYSQFCDNYRRFARQLKRSMRQIHRAGEKLFIDYAGPTIALTDGSR
                     AHIFVAAMGASSYTFAFATPRETMADWLESTARALSFYGGVTQLIVPDNPRALISDAN
                     RYEPRSNDTVLDFARHYGTSILPARPYHPQDKAKAESAVQIVERWIMARLRHQQFASV
                     HEVNQAVAPLLTRLNEKPFQKLPGSRASTFAALDAPALLPLPLQRYEMAHFKTVKAHI
                     DYHVEVEQHRYSVPHALVGQVREARITTAVVELMHRGQRVASHARSNRHGGFTTTAAH
                     MPAAHRAH"
BASE COUNT          310 a          494 c          474 g          283 t
ORIGIN      
        1 tgagttcccg tctcaaattg acgcgaggtc agcacgaacg tttggacgtc cggcttcatg
       61 agcaaggttg cggcgcgatg caccgccgcc acggcaacct ccaatgtctc gacgaccggc
      121 cgatgggtat tccggagcat cgtgaccgat gattccggac gaacgtgacc gaccattctg
      181 gttcatcgtg accgcccatt ccgggcgaac gtgaccgatt tcggaggacc tccggaatca
      241 ctggtcacga taccggaatc atcggtcacg atgccggaat ggcgttgtac ggcgcaggaa
      301 tgatgttacg catatgagca actgagtggg tacgcttcca gctttttcgt ctggagatag
      361 cgtgcccgca ccaaggatca atatgcgtaa gataagagac gtattgcgtt tgaagttgga
      421 cgccaaactt tcgcacgagc agattgctgg cgcgctgggc atctccaaag gcgtcgtcac
      481 caagtatgtg gggctcgccg cggcagcggg cctggactgg cctacggtgc aagatgctga
      541 cgagatcacg cttgagcggc gactgctggt ggcgccccag aagccacgca atcatgtcca
      601 gccggactat ggtcgcctcc accaggagtt gcgccgtaag ggcatgacgc tgatgctgct
      661 gtgggaggaa taccgggccg agcacgcgga ccgtcagacc tacgcctact cccagttctg
      721 cgacaactat cggcgcttcg ccaggcagct caagcgctcg atgcggcaga ttcaccgcgc
      781 aggcgagaag ctgttcatcg attacgccgg ccccaccatc gcattgaccg acggcagccg
      841 ggcccacatc ttcgtcgccg cgatgggtgc ctccagctat acattcgcct ttgccacgcc
      901 gcgcgagacg atggctgact ggctcgaatc gacagcgcgc gcactgagct tttatggcgg
      961 cgtgacacag ctcatcgtgc ccgacaaccc acgtgcgttg atctcggacg ccaatcgata
     1021 cgaaccgcgc agcaacgaca cggtgctcga cttcgcgcgc cactacggca cctcgattct
     1081 gccggcgcgc ccctatcatc cacaggacaa ggcgaaggcg gagtcggcgg tgcagatcgt
     1141 cgaacgctgg atcatggcgc gcctgcgtca tcagcagttt gccagcgtgc atgaagtgaa
     1201 ccaggctgtc gcgccgttgc tgacgcggct caacgagaag ccgttccaga agctgcccgg
     1261 tagccgtgca agcacctttg ccgcgctcga cgcgccggcc ttgctgcctt tgccgttgca
     1321 gcgctatgag atggcgcact tcaagaccgt caaggcccat atcgactatc acgtcgaggt
     1381 cgagcagcat cgctacagcg tgccgcacgc actggtcggg caagtgcgtg aagcgcgtat
     1441 tacgaccgcg gtggtcgagc ttatgcatcg cgggcagcga gtggccagcc atgcgcgtag
     1501 caaccggcac ggcggcttca ccaccaccgc cgcacatatg ccggccgcgc atcgcgccca
     1561 c
//
LOCUS       DATGBK010000591         1592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_308187, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000591 DATGBK010000000
VERSION     DATGBK010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308187"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            300..>1592
                     /gene="gltX"
                     /locus_tag="VKJ77_08455"
     CDS             300..>1592
                     /gene="gltX"
                     /locus_tag="VKJ77_08455"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HMC45339.1"
                     /translation="MTQVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGVFVLRIED
                     TDLERSTDASVDAILEGMEWLGLEYDEGPIYQMQRMDRYREVLKQMLDQGLAYHCYMS
                     TEELDVLRERQRAANEKPRYDGTWRPEEGKVLPPVPEGVSPVIRFRNPLGGVVSWDDA
                     VKGTIEISNDELDDLVIARPDGTPTYNFCVVVDDLDMKITHVIRGDDHVNNTPRQINI
                     LRALGGEVPVYAHLPTVLNEQGEKMSKRHGAMSVMGYRDSGYLPEAVLNYLARLGWSH
                     GDAEIFSREQFVEWFDLDHLGKSPAQYDPDRLNWLNAHYIKEADNARLETLAKPFLAD
                     LGIDSAMIEQGPPLELVIGLLKDRASTVKEIGDNAAMFYQEPVIDPAALAQHVTETVR
                     PALADLRQALSEVEWSKEAISAAFKATLTSHKLKMPHLA"
BASE COUNT          340 a          486 c          488 g          278 t
ORIGIN      
        1 gacgaaagcg aaggcggcga agttttcaaa gagttctcct gcgatgcagc ggggacgagc
       61 gtggagactg ctcaggcaat ctggttggcc gcctggttaa gccatccggt gaagccgcac
      121 atgataaaac atgatgaccc ccgaaagcag gccaaaagcg cccggcgggt ataattcaca
      181 ctcgttttga ccgctcgcca agttcgtcca gaagacgcgc cgaagccggt ccccgatata
      241 tcgcttgcct ggctcctccc gtgccagcaa acgcatttga gctatcgagc acaccgcaca
      301 tgacccaagt ccgtacccgt ttcgctccca gccccacagg cttcatccac ctcggcaaca
      361 ttcgctccgc gctttatccg tgggcgttcg cgcgcaagat gaagggcgtt ttcgtgttgc
      421 gcatcgagga caccgacctg gagcgctcga ccgacgcgtc cgtcgacgcc atccttgaag
      481 gcatggaatg gctcggcctc gaatacgacg aaggtccgat ctaccagatg cagcgcatgg
      541 accgctatcg cgaggtgctg aagcagatgc tcgatcaggg cctggcctac cactgctata
      601 tgtcgacaga agaactcgac gtgttgcgtg aacgccagcg cgcggccaat gaaaagccgc
      661 gttacgacgg cacgtggcgc ccggaagaag gcaaggtgct gccgcccgtt ccggaaggcg
      721 tctcgccggt cattcgcttt cgcaatccgc tgggcggcgt agtgagctgg gacgacgcgg
      781 tgaagggcac gatcgaaatt tcgaacgacg agctcgacga cctcgtgatc gcgcgcccgg
      841 acggcacgcc gacctataac ttctgcgtgg tcgtggacga tctcgacatg aagatcaccc
      901 acgtgattcg cggcgacgac cacgtgaaca acacgccgcg ccagatcaac atcttgcgcg
      961 cgctgggcgg cgaagtgccc gtgtacgccc acttgccgac cgtgctcaac gagcagggcg
     1021 agaagatgag caagcgccac ggcgcgatga gcgtgatggg ttatcgcgat agcggttatc
     1081 tgccggaagc ggttctgaac tatctggcgc ggctcggctg gtcgcatggc gatgcggaga
     1141 ttttctcgcg tgaacagttt gtcgaatggt tcgatctgga ccatctgggc aagtcgccgg
     1201 cgcaatacga tccggaccgg ctgaactggc tgaacgcgca ctacatcaag gaagccgaca
     1261 acgcacggct ggaaacgctc gcgaagccat tcctggccga cctgggtatc gactcagcca
     1321 tgatcgagca agggccgccg ctcgagctcg tgatcggtct gctgaaggac cgcgcatcga
     1381 cggtaaagga aatcggcgat aacgccgcca tgttctatca ggagcccgtg attgatcccg
     1441 ctgcactcgc gcagcatgtc accgaaacgg tgcgtcccgc gctcgctgac ttgcggcagg
     1501 cactgagcga agtggagtgg agcaaggaag ccatctcggc ggcgttcaag gccacgctga
     1561 cgagccacaa gctcaagatg ccgcatctcg cc
//
LOCUS       DATGBK010000592         1687 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285168, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000592 DATGBK010000000
VERSION     DATGBK010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285168"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..326)
                     /locus_tag="VKJ77_08460"
     CDS             complement(<1..326)
                     /locus_tag="VKJ77_08460"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HMC45340.1"
                     /translation="MNPKFAMVVALAAGVVATAGCAASKPVITVNGSAISKSDFDNKL
                     ESNTRASDPVLQQMVDKMLIDQYAAANKIPATDDDINAQMTKIEANFPAGQFETVLKQ
                     QGLSMQ"
     gene            complement(362..>1687)
                     /locus_tag="VKJ77_08465"
     CDS             complement(362..>1687)
                     /locus_tag="VKJ77_08465"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRCF domain-containing protein"
                     /protein_id="HMC45341.1"
                     /translation="LADGKVDVVVGTHRLLQRDVVFRDLGLIVVDEEQRFGVMHKERL
                     KQMRASVDVLTLSATPIPRTLQMSLMGVRDLSLIQTPPVNSVAIKTVVTPSSDAVVGQ
                     ALRRELDRGGQVYFVHNRIETIYGVAAALQALAPRARIVIGHGQMKEGELEDVMVGFV
                     DGEFDILVSTTIIENGLDIPNVNTIVVNNADRFGLAQLYQLRGRVGRSAHQAYAYFLH
                     QPHRKLSEEAQSRLDAIREFSHLGSGLQLAMRDLEIRGAGNLLGPRQSGFIAAVGFET
                     YCQILQEAIEQRRGLPQIETAPPPVLDLRVSAYLPSDYVKGAGQKIALYQRLAAAQST
                     AEIDALGDELRDRFGRPPDTVEALLELSRVRVLAQAKGVEKLSLEQRRLTLEIGRRFS
                     LSEQALPALTALTRGNFRFTQSAIVIHLPPTTQARNGTLGVVREVLTAL"
BASE COUNT          310 a          500 c          525 g          352 t
ORIGIN      
        1 tcttgcatac tcaaaccctg ttgcttgagg acggtctcga attggcccgc ggggaagttc
       61 gcttcgatct tcgtcatctg ggcgttgatg tcgtcgtcgg tcgcggggat cttattcgct
      121 gcagcgtatt ggtcgatgag catcttgtcg accatttgct ggagcaccgg atcgcttgcg
      181 cgcgtgttgc tctccaactt gttgtcgaaa tcgctctttg agatggccga gccgttgacc
      241 gtgatgaccg gtttgctggc ggcgcagccc gcggtggcga ccacgcctgc ggcgagggcc
      301 actaccatcg cgaacttggg attcattaac tacctcctag tagagtgccg cagcgtcgcc
      361 gtcaaagggc ggtcaggacc tcgcggacga caccgagcgt gccgttgcgc gcctgcgttg
      421 taggcggcag gtgaatgaca atcgcgctct gcgtgaaacg aaagtttccc cgggttaagg
      481 cggtgagcgc tggaagcgcc tgttcggaca gtgaaaacct tctaccgatt tcgagcgtca
      541 atcgtcgctg ttcgagcgac agtttttcga ctcctttggc ttgtgcgagt acacgcacac
      601 gtgacagctc tagaagcgct tcgacggtgt cgggcgggcg tccgaaacgg tcccgcaatt
      661 cgtcgccgag cgcgtcgatt tcagccgtcg attgagcggc cgcgagccgc tggtacagcg
      721 caatcttctg gccggcaccc ttcacgtagt ccgatgggag atacgcgctg actcgaaggt
      781 cgagcaccgg aggcggcgcg gtttcgattt gcggaagacc gcgcctctgt tcgattgctt
      841 cctgaaggat ctggcaatag gtctcaaagc ctactgcagc gatgaatccg gactgacgcg
      901 gtcccaagag attgccggcg ccgcggatct cgagatcgcg catcgccaac tgcaagcccg
      961 agccgagatg cgagaattcg cggatggcat ccagccgcga ctgcgcctct tcggaaagct
     1021 tgcggtgcgg ctgatgcaag aagtatgcgt acgcttggtg cgcgctgcgg ccgacgcgac
     1081 cgcgcaattg gtagagctgc gccagtccga agcggtcggc gttgttcacc acgatcgtgt
     1141 tgacgttcgg aatatcgagc ccattttcga tgatggtcgt cgaaaccaag atgtcgaatt
     1201 cgccgtcgac gaatccgacc atcacatctt cgagttcgcc ttccttcatc tgaccgtggc
     1261 cgatgacgat gcgcgcccgc ggtgcgagcg cctgcagcgc ggccgcgacg ccgtagatcg
     1321 tctcgatgcg attgtgcacg aagtacacct gaccgccccg atcgagttcg cggcgcagcg
     1381 cttggcccac gaccgcatcg ctcgagggcg tcaccaccgt cttgatcgcg acgctattga
     1441 cgggcggcgt ctggatgagc gaaagatcgc gcacgcccat gagcgacatc tgcagcgtcc
     1501 gtggaatcgg cgttgccgat agcgtgagta cgtcaacgct cgcacgcatc tgcttgagac
     1561 gttccttgtg catgacgccg aagcgctgtt cttcatcgac gacgataagg ccgaggtcgc
     1621 gaaacacaac gtcgcgctgc agcaagcgat gcgtgccgac gacgacatca actttgccgt
     1681 cagctaa
//
LOCUS       DATGBK010000593         1974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285173, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000593 DATGBK010000000
VERSION     DATGBK010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285173"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1015)
                     /locus_tag="VKJ77_08470"
     CDS             complement(<1..1015)
                     /locus_tag="VKJ77_08470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC45342.1"
                     /translation="MPSFFINRPVFAWVIAILICLFGIISVHGMGIDSYPDIAPPEVT
                     VTAQYPGASARTMESTVTQVIEQQLTGIDNLLYFSSNSSSNGQTQIILTFATGTNPDI
                     AQVQVQNKVTLAQPLLPTQVTQQGVVVAKASPDILMFVALQSDNPSIDAGRLSDILAS
                     DIQPNIGRVNGVGNTTLLGSEYAVRIWLDPNKLQSYGLSTTQVLNAVSSQNAQFAAGS
                     LGADPAVKGQVFTANVTGDSLFSSIKQFQDIIIVANNNGTTVKLSDVARVSFGSQTYG
                     FAPVYNGKAAGGMAVFLLPGANALAVAKAVKAEMATLAKDLPEGVNWSVPYDTTPFIT
                     ASIV"
     gene            complement(1026..>1974)
                     /locus_tag="VKJ77_08475"
     CDS             complement(1026..>1974)
                     /locus_tag="VKJ77_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC45343.1"
                     /translation="VNDHITALRNRKLLPVGSVSQQTVDNSDAAERSAAAKIKADEAT
                     VASARVSLNYTRVTAPIGGIAGQQQVTAGAVVGSSTSDTGGSGTLLTTVQQIDPMYVN
                     FTISSADLVTLQDSQSAGSVDLSQQNHTTVKISLPNRASYATPGTLDFSDVSVNAATG
                     SVNLRALVANPQRRLLPGMYVTLTVNFGTQKNVFLIPQQGVQRDTVGAYVLVVGADNK
                     VGRKDVVATDSLGNNWIVTQGLIDGDEIIVTGVQMAREGAQVKPVAWQPPAAASGAAA
                     VSAAPSASTTPAAPMAVAVSSPPAAPVATASAASAGLAK"
BASE COUNT          343 a          641 c          621 g          369 t
ORIGIN      
        1 ccacgatcga cgcggtaatg aaaggtgtgg tgtcgtaggg cacgctccag ttgacgcctt
       61 ccggcagatc cttcgccagc gtcgccatct cggccttgac tgccttcgcg accgcgagcg
      121 cattggcgcc cggcaacagg aacacggcca tcccccccgc cgccttgccg ttatagaccg
      181 gcgcgaagcc gtaggtctgc gagccgaacg acacccgcgc cacgtcgctc agcttgacgg
      241 tggtgccgtt gttgttggcg acaatgatga tgtcctggaa ctgcttgatc gacgaaaaga
      301 ggctgtcccc cgtcacgttg gccgtaaaca cctgcccttt caccgccggg tccgcgccga
      361 gcgagccggc tgcgaactgc gcattctgcg agctcacggc attgagcacc tgcgtcgtcg
      421 acagcccgta gctctgcagc ttgttagggt cgagccagat gcgcaccgcg tactcggagc
      481 ccagcagcgt ggtattgccg accccgttca cacggccgat gtttggctgg atatctgacg
      541 cgagaatatc ggagagacgc cctgcatcaa tcgacggatt atccgattgc agcgcgacga
      601 acatcaggat gtccgggctc gccttcgcca ccacgacccc ttgctgcgtg acttgagtcg
      661 gcagcagcgg ctgggcgagc gtgaccttgt tctgcacctg cacctgggcg atgtccgggt
      721 tggtgccggt cgcgaacgtg aggatgatct gcgtctggcc attcgagctc gagttcgaac
      781 tgaaatacag cagattgtcg atgccagtga gctgctgctc gatcacctgg gtcaccgtcg
      841 actccatcgt ccgggcgctt gcgcctggat actgcgcagt gacggtcacc tccgggggcg
      901 caatgtcggg gtacgaatcg atccccatgc cgtgcacaga gatgatgccg aacaggcaga
      961 tcaggatcgc gatcacccag gcgaagacgg ggcggttgat gaaaaaactc ggcatgagcg
     1021 gtctcctact tcgccaagcc ggccgaagcc gctgacgccg tggcaaccgg cgcggccggg
     1081 gggctcgaca ctgcgaccgc catgggcgct gcgggcgtgg tggacgcgga gggtgctgct
     1141 gataccgccg ccgcaccaga cgccgccgca ggcggctgcc acgcgacggg cttcacctgt
     1201 gcgccctccc gcgccatctg cacccccgtc acgatgatct cgtcaccgtc gatcagcccc
     1261 tgcgtcacga tccagttgtt gccgaggcta tcagtggcca cgacgtcctt gcgccccacc
     1321 ttgttatccg cgccgacgac cagcacgtac gcgccgaccg tgtcgcgctg cacgccctgc
     1381 tgcgggatca ggaacacgtt tttctgcgtg ccgaagttga ccgtcagcgt cacatacata
     1441 ccgggcagca gacgccgctg cgggtttgca acgagcgcac gcaaattgac cgagccggtc
     1501 gcagcattca ccgatacgtc tgagaaatcg agcgtgcccg gagtggcgta cgacgcacga
     1561 ttaggtagcg agatcttcac cgtggtgtga ttctgctgcg agaggtcgac cgaaccggcg
     1621 ctctgggagt cctgcagcgt caccagatca gccgaactga tcgtgaagtt cacgtacatc
     1681 ggatcgatct gctggacggt cgtcagcagc gtgccgcttc cacccgtgtc tgacgtgctg
     1741 ctgccgacca cagcgcctgc cgtcacctgt tgttgtccgg cgataccgcc aatgggcgcc
     1801 gtcacgcgcg tgtagttgag cgagacccgt gcgctcgcga cggttgcctc gtcggccttg
     1861 atcttggcgg cggcgctgcg ttcagccgca tcggaattgt cgacggtctg ctgcgagacc
     1921 gacccgaccg gcagcagctt gcggttacgc aaggctgtaa tgtgatcgtt gacg
//
LOCUS       DATGBK010000594         1765 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285178, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000594 DATGBK010000000
VERSION     DATGBK010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285178"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VKJ77_08480"
     CDS             <1..206
                     /locus_tag="VKJ77_08480"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602380.1"
                     /note="catalyzes the formation of dUMP from dUTP; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HMC45344.1"
                     /translation="VGLIDSDYQGQLMISTWNRGATAFTLNPLERLAQMVIVPVVQAT
                     FNIVDDFAQSERGAGGFGSTGKH"
     gene            complement(240..455)
                     /locus_tag="VKJ77_08485"
     CDS             complement(240..455)
                     /locus_tag="VKJ77_08485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45345.1"
                     /translation="MGASLLTQQHSFYIELANAMKADVVKDHAQIDIAIANQDSSKQI
                     ADVQDFVTKRVDAVVISPVDSVAHWHQ"
     gene            complement(489..>1765)
                     /locus_tag="VKJ77_08490"
     CDS             complement(489..>1765)
                     /locus_tag="VKJ77_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006416152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015171 - amino acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HMC45346.1"
                     /translation="GAIGTGLFLGSGFAIGFAGPSVLVSYAIGALTALLLMGALAEMT
                     VAHPTSGSFGAYAEFYIGPLAGYLVRYAYWSAVVFAVGTEVSAVAVFMKYWFANVPGW
                     YWIVGFSAALIGVNAASVKVYGVIEYAFSMLKIVAIVAFILLGAVFVYGAPVSSGVGL
                     SNFTAHGGFFPHGVKGMWFAVIVSIFSYLNIETIAVAAGEARDPQRAVAQAFRSTVFR
                     LVLFYLLTLALMLAIVPWTQASTDESPFVKVMAATHVPFAAGVINFVVLVAALSAMNS
                     QLYITTRMMFSLSRAGYAPARFGRLSANGVPTAALTLSTSGIALATILTAFWPAMAFG
                     LMMSLAIFGAMFAWLMIFVTHLFFRVRYDGPALPFRMVLHPFGSLLGAGLMAAIMITT
                     AFTSEFRMTLVYGLAFMVVLLATYLLWYRKRG"
BASE COUNT          410 a          554 c          504 g          297 t
ORIGIN      
        1 tggtcggctt gatcgactcg gattatcaag gccagttgat gatctcgacg tggaaccgcg
       61 gcgcgactgc gttcacactg aacccgcttg aacgcctcgc gcaaatggtg atcgtgccgg
      121 tggttcaggc aacgttcaat attgtcgatg acttcgccca gagcgagcgc ggcgccggtg
      181 gtttcggcag cacaggcaag cactgagttt taggcttgcc ctacacgttg tccgcctggt
      241 tattgatgcc aatgcgcgac ggaatcgacc ggtgaaatca caaccgcatc gacccgtttc
      301 gtcacgaaat cctggacgtc ggcaatctgc ttgctcgagt cctgattcgc gattgcgata
      361 tcgatctgcg cgtgatcctt cacgacgtcc gctttcatcg cgttggcgag ttcgatgtaa
      421 aacgaatgtt gttgcgtgag cagcgacgca cccatcgtca catcggcggc gtagtggtcg
      481 ttccgtgttt acccgcgctt cctataccag agtaagtaag tcgcgaggag aacgaccata
      541 aacgccaggc cgtaaacaag cgtcatgcgg aattcgctcg tgaaggcggt ggtgatcatg
      601 attgccgcca tcaaacctgc ccccagcaga cttccaaacg gatgcagcac catccggaag
      661 ggcagtgccg gtccgtcgta ccggacgcgg aaaaagagat gcgtgacgaa gatcatcaac
      721 caggcgaaca tcgcgccgaa gatcgccagc gacatcatca agccgaacgc catcgccggc
      781 cagaacgccg tgaggatggt ggccagtgcg atgccgctgg tcgacaaagt tagcgcggcg
      841 gtgggcacgc cgttcgcgct cagacgcccg aagcgtgccg gcgcgtaacc ggctcgcgac
      901 aggctgaaca tcatgcgggt agtgatgtag agctggctat tcatcgcgga gagcgccgca
      961 acgagcacca cgaagttgat cacccctgca gcaaacggga cgtgcgtggc ggccatcact
     1021 ttgacgaatg ggctttcgtc ggtgctggcc tgcgtccacg ggacgattgc cagcatcaac
     1081 gccaaggtga gcagatagaa gagcaccagc cggaatacgg tcgatcgaaa agcctgggcc
     1141 acagcgcgct gcggatcgcg cgcttcgccg gccgcgaccg cgatcgtctc gatgttcagg
     1201 tagctaaaga tggaaacaat gaccgcgaac cacatgccct tcacgccatg cggaaagaac
     1261 ccgccgtgcg ccgtgaagtt gcttagcccg acgccggacg acaccggcgc gccgtacacg
     1321 aacaccgcgc cgagcaggat aaacgcgacg atcgccacga ttttcagcat cgaaaacgcg
     1381 tattcgatca cgccgtacac cttgacgctc gccgcgttca cgccaatcag cgcggcggaa
     1441 aaaccaacga tccaatacca gcccggcaca ttcgcaaacc agtacttcat gaacacggcg
     1501 accgcgctga cctcggtacc gaccgcaaat acaacggccg accagtacgc gtatcggacg
     1561 aggtatcccg cgagcggccc gatataaaac tccgcgtacg cgccaaacga tccggaggtc
     1621 gggtgcgcaa ccgtcatctc ggccagcgcg cccatcagca acaacgcggt cagcgcaccg
     1681 atcgcgtaac tcaccaacac gctcggcccg gcgaaaccga tcgcaaaacc actacctaaa
     1741 aaaagccccg ttccaatcgc cccgc
//
LOCUS       DATGBK010000595         1577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_169424, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000595 DATGBK010000000
VERSION     DATGBK010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169424"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..810)
                     /locus_tag="VKJ77_08495"
     CDS             complement(<1..810)
                     /locus_tag="VKJ77_08495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45347.1"
                     /translation="MEPAVVLSVSLADAECLDLSDIVNTDRYPLHDPDSPRLNDLVAA
                     CRAELAASGSAVLHDFLRPEALERARNEGRALATKTYFSTRKVNAYFTADDPALSDAD
                     PRRIFMDRTSGFVTRDLIPADAIVHRIYVAQAMKRFVADCLGETRVWEYADPYAGLVQ
                     NVMPPGTEQPWHYDTNEFIVSMMTQQPTAGGDFEYCPNIRTPQGENYEGVGRVVRGET
                     REAINIITLRPGDLQLFKGRFSLHRVTQVAGEVERHTAIFAYSQKPGVIGRL"
     gene            916..>1577
                     /locus_tag="VKJ77_08500"
     CDS             916..>1577
                     /locus_tag="VKJ77_08500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017330619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45348.1"
                     /translation="MDSISEPDWSKIASLDAELVRAFVVVAESGGFTAAARQLHRTQS
                     TISLRIRTLEERLGAHLFMRNSRHFALSSDGENFLIHARRILQVQNEAIASLTRGSRG
                     NVIRFGLPEDYAELWLPELLRAFYALRPGARPHIHCRTSLELLERLGAGELDLALVVR
                     HGERAGGKPLARQELVWAAHHDFELCADAPVPLALFDESCTYRQRGLQALTAISRDYQ
                     LV"
BASE COUNT          291 a          443 c          515 g          328 t
ORIGIN      
        1 aagccgtccg atcacgccag gcttttgcga gtacgcgaag atggccgtgt ggcgctcgac
       61 ctcgcccgct acctgcgtga cgcggtgcag cgaaaagcgg cccttgaaca attgcaggtc
      121 gcccggacgc aacgtgatga tgttgatggc ttcgcgggtt tccccgcgta ccacgcggcc
      181 gacgccttcg tagttctcgc cttgcggcgt gcgaatgttc gggcagtatt cgaagtcgcc
      241 gccggcggtg ggctgctggg tcatcatcga aacaatgaat tcgttcgtgt cgtaatgcca
      301 cggctgctcg gtaccgggcg gcatcacgtt ctgcaccagg cccgcatacg gatcggcgta
      361 ttcccacact cgagtttcgc ccaggcagtc cgccacgaaa cgtttcatcg cctgggcgac
      421 atagatgcga tgcacgatcg cgtccgccgg aatcaggtcg cgtgtcacga aaccgctggt
      481 gcggtccatg aagatgcggc gcggatcggc gtcggacagc gcggggtcgt cggcggtaaa
      541 gtaagcgttc accttacggg ttgaaaagta ggttttcgtg gccagtgcgc gaccctcgtt
      601 gcgcgcccgc tccagcgcct ccgggcgcag gaagtcgtgc agcacggcgc tgccgctggc
      661 ggccagctcg gcgcggcagg ccgccaccag gtcgttcagg cgggggctgt ccgggtcatg
      721 caggggatag cggtcggtgt tgacgatatc gctgagatcc aggcattcag catcggcaag
      781 tgaaacagag agaaccacgg caggctccaa atcgatattt tggcgagtgg atttacgagt
      841 cgacttcaac aacaatctgc aaacaacggc ctgatctttt ggcggccaat ttcttttgga
      901 aagcgagtat ttccgatgga ttccattagc gaacccgatt ggtcgaagat cgcttcactc
      961 gatgcggaac tcgtgcgtgc gtttgtagta gtggctgaaa gcgggggttt tacagcggcg
     1021 gcgcgccagc ttcatcggac gcaatcgacc atcagccttc gtatccggac gcttgaggaa
     1081 cggcttggcg cgcacctgtt catgaggaat agccgtcatt tcgcgctctc aagcgatggc
     1141 gaaaatttcc tgatccacgc tcggcggata ttgcaggtgc agaacgaggc gattgcatcg
     1201 ctcacgcggg gtagccgcgg caacgtgatt cgtttcgggt tgccggaaga ttatgcggag
     1261 ctttggctgc cggaattgct gcgggcgttt tacgcgttgc gccccggcgc tcggccgcat
     1321 attcattgcc ggacatcgct ggaattgctg gaacggctgg gtgcaggtga actcgatctg
     1381 gcgctggtcg tgcggcacgg cgagcgtgcc gggggaaaac ccctagcacg tcaggaactc
     1441 gtgtgggcag cgcatcatga tttcgagttg tgcgcggatg cgccggtgcc gctcgctctc
     1501 ttcgacgaaa gctgtacgta tcggcaacgg ggattgcagg cgctgaccgc aatcagccgg
     1561 gattatcaac tcgtgta
//
LOCUS       DATGBK010000596         2993 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_262069, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000596 DATGBK010000000
VERSION     DATGBK010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2993
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262069"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1707
                     /locus_tag="VKJ77_08505"
     CDS             <1..1707
                     /locus_tag="VKJ77_08505"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HMC45349.1"
                     /translation="LTATDAGNYVLLDPDGIEVLRGRVGHEASGASTFGEVTLLVDRM
                     TGEPGSKFDLSRASTLDTVAGLQRRLSVVETALHSGVVELSLEGQDSELTTKTVNDIV
                     SRFVQQDLDARSAEVGKTLAFLEQQLPQVRAQLHAAEISYNTFRSKSGVIDVNEGSRL
                     LLQQAVDNKSKLLGLQQQRAELSQRFTSSYPAVAALDAQIAEVTKAQEALTKSFAVLP
                     DTEQDAARLLRDVRANTELYANLQSKTQELRMAKAGQVGNVRVVDYAEAPDSPVRPKR
                     LTAILISIAGGLLFGILVAFARRSVYGGVERPEDIEDAVGVRVFAIVPRSTQQLRLQQ
                     KVSTRTQGLHVLAATSPEDAAVEGMRGLRTSLQLQMEDSRNNVLMLTGSRPNAGKSFV
                     SVNLATLVASTRKRVLLIDGDMRRGDVHSHFGVRHAPGLSDVLMGSDIESAVLHDVSP
                     GVDLLTKGSLPVHPSELLMSDRMQEVLDFLERRYDLVIIDTPPVLAVTDATLIGRHAG
                     TSLLVVRHGFNQVEEIGETVKRLNLGGVSMKGILLTDVPQSKLMSGSAYTSYYNYESI
                     PG"
     gene            complement(1908..2054)
                     /locus_tag="VKJ77_08510"
     CDS             complement(1908..2054)
                     /locus_tag="VKJ77_08510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019446955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxalate:formate antiporter"
                     /protein_id="HMC45350.1"
                     /translation="MNTHTNPNRELDAHPTNKLLLGVFWIYAIVPLSWGVINTLVQAT
                     KLFH"
     gene            complement(2088..>2993)
                     /locus_tag="VKJ77_08515"
     CDS             complement(2088..>2993)
                     /locus_tag="VKJ77_08515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HMC45351.1"
                     /translation="MATGMAIMGFGGGAMIAAPASVALMNHFKSATSNGVTETFVVLG
                     IVYFISMSIGALAIRVPRPNWTPAGWTPPVTNGNKMITRNHVHIDQALKTPQFYLIWL
                     VLFLNVTAGIGVLGQASVMIQESFKASITAGAAAGFVGLLSLFNMGGRFVWASASDWI
                     GRKNTYFVFFVLGAVLYLLVPQFAQSGNVALFVLSYCVILSMYGGGFATVPAYLADMF
                     GTKFVGGIHGRLLTAWAAAGIAGPVLVNYIRAYEVAHGVVKAEAYTTTLHIMAGLLVI
                     GFICNLLVKRVNEKHHMSASALAAD"
BASE COUNT          624 a          890 c          933 g          546 t
ORIGIN      
        1 ctcactgcca ccgacgctgg caactatgtg ctgcttgacc cggatggcat cgaggtcctg
       61 cgtggcaggg taggccacga agcaagcggt gcgagcacgt tcggtgaggt gacgctgctg
      121 gtcgacagga tgacgggcga acccggttcg aagttcgacc tgtcgcgggc gtccacgctg
      181 gatacggtgg ccgggctgca acgccgcttg tcagtcgttg aaaccgcatt gcactccggg
      241 gttgtcgagt tgagcctgga gggccaggat agcgagctga ccacgaagac ggtgaacgat
      301 atcgtcagcc gtttcgtgca gcaggatctg gatgcgcgtt ctgccgaagt cggcaagaca
      361 ctcgcgttcc tggagcagca actgccacag gtgcgcgcgc aactgcatgc ggccgagata
      421 agctacaaca cgtttcgtag caagtcaggc gtcatcgacg tgaacgaagg aagccggctc
      481 ttgctgcagc aggcggtcga caacaagtcg aaactgctcg ggctccagca gcaacgcgcg
      541 gaactctcgc agcgcttcac gtcgagctat ccggcggtgg cagcgctcga cgcgcagatc
      601 gccgaggtga cgaaagcgca agaagcactg acaaaaagtt ttgcggtatt gccggacacg
      661 gagcaagacg ccgcgcgcct gttgcgtgat gtgcgtgcca acacagagct ctacgccaac
      721 ctgcagagca agacacagga gctacgtatg gcgaaggccg gccaggtggg caatgtgcgc
      781 gtggtcgatt acgccgaagc ccctgacagc ccggtccgtc ccaagcgcct gactgcaata
      841 ctgatcagca tcgctggtgg actgttgttt ggcatcctgg tggccttcgc gcgtaggtcg
      901 gtgtacggcg gtgtcgaacg tccggaagat atcgaggacg cagtgggtgt gcgggtgttc
      961 gccatcgtgc cgcgcagcac tcagcagctt cgcctgcagc aaaaagtcag cacgcgcacc
     1021 caagggcttc atgtgctcgc tgcgacgtcg cccgaagacg ctgcagtcga aggaatgcgc
     1081 ggcttgcgga cctcgctgca actgcagatg gaagattctc gcaacaacgt gctgatgctg
     1141 acgggctcgc gtccgaatgc cggcaagtcg ttcgtttcgg tgaatctggc gacactcgtt
     1201 gcatcgacga gaaaacgcgt cctgctaatc gacggcgata tgcgtcgcgg cgatgtgcac
     1261 tcgcatttcg gcgtgcgtca cgcgccgggt ttgtcggacg tcttgatggg ttcggatatc
     1321 gaatcggcgg tgctgcatga cgtgtcgccc ggcgtggacc tgctgacgaa aggttcgctg
     1381 ccagtccatc cgtctgagct cctgatgagc gaccgcatgc aggaagtgct tgatttcctc
     1441 gagcgtcggt acgacctcgt catcatcgac acccccccgg tcctcgctgt cacggatgcc
     1501 acgctgatcg gcaggcacgc cggcacgagc ttgctggtgg tgcggcacgg attcaaccag
     1561 gtggaggaga ttggcgagac cgtgaagcgc ttgaatcttg gtggtgtgag catgaagggc
     1621 atcctgctga cggacgtacc gcaatcgaaa ctgatgtcgg gcagcgctta taccagctac
     1681 tacaactacg aaagcattcc gggatgacgc cggcacccat cacggtgcgc actgcgtgca
     1741 cgctcaaaca cagtggagac actggagaga tggcaaggcc gcttcgactg ccgagaggtt
     1801 gtgcaagcgc ctagaagaat aaaaagcagc ataaaaaaac gccggctttt gcagagccgg
     1861 cgttttcgtt tgatcgacgc aatgcaatcg cgccgatgcc ttcagcatca atgaaacagc
     1921 ttggtcgcct ggaccagggt gttgatcacg ccccatgaaa gcggcacgat tgcatagatc
     1981 cagaacacgc cgagcagcag cttgttggtc ggatgcgcgt ccagctcgcg gttcgggttg
     2041 gtatgggtgt tcatcgcatt ctccgcgcta gagtaggttt agtggattca atctgccgcg
     2101 agtgcggacg cgctcatgtg atgtttctcg ttcacgcgct tcaccagcaa gttgcagata
     2161 aagccgatca ccagcagtcc cgccatgatg tgcagcgtcg tggtgtaggc ctccgccttc
     2221 accacgccat gcgccacttc atacgcgcgg atgtagttca ccagcaccgg acctgcaatc
     2281 cctgccgcag cccacgcggt cagcaagcgg ccatgaatgc cgccgacgaa cttcgtgccg
     2341 aacatatcgg cgagataggc cgggacggtc gcgaagccgc cgccgtacat ggacaggatc
     2401 acgcaatacg agagcacgaa gagcgcaacg ttgccgctct gcgcaaattg cggcaccagc
     2461 agatacaaca ccgcgccgag cacgaagaac acgaagtagg tgttcttgcg tccgatccag
     2521 tccgacgccg atgcccacac gaaacgcccg cccatgttga agagcgaaag cagtccgacg
     2581 aaaccggccg ccgcccctgc cgtgatcgat gccttgaagc tctcctggat catcaccgac
     2641 gcttggccca gaacgccgat cccggccgtc acgttgagga acagcaccag ccagatcagg
     2701 tagaactgcg gcgtcttcaa cgcctggtcg atatgcacgt gattgcgcgt gatcatcttg
     2761 ttgccgttgg tcaccggcgg cgtccagccc gctggcgtcc agttcggacg cgggacgcgg
     2821 atggcgagcg cgccgatcga catcgagatg aaatagacga taccgagcac cacgaaggtc
     2881 tcggtcacgc cgttgctggt cgcgctcttg aagtggttca tcagcgccac cgaagcaggc
     2941 gccgcgatca tcgcaccgcc gccgaagccc atgatcgcca tgccggtcgc cat
//
LOCUS       DATGBK010000597         1554 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_308230, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000597 DATGBK010000000
VERSION     DATGBK010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308230"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..866
                     /locus_tag="VKJ77_08520"
     CDS             <1..866
                     /locus_tag="VKJ77_08520"
                     /inference="COORDINATES: protein motif:HMM:NF013502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CheB methylesterase domain-containing protein"
                     /protein_id="HMC45352.1"
                     /translation="FIPKPDSAYIDILKVQRDLVEKIRLFGSRTAYLRAMHGQASTGP
                     PTPRAVLPQSTPLAPPMQKRPPLQFTPPPLSTPSVPVPVRPATTVRVGHYECVALGTS
                     TGGPVALSHILPKLPKNFPVPIIVVQHMPPGFTKPLADRLNASSQITVVEGAAGMPLA
                     PGMAVISPAGQQLRLVRGPRGVEIRLDHDAEKSLHVPSVDVMAASVGEVYGAASLGVI
                     LTGMGHDGVEGLKTIKARGGYVIGQDEASSVVYGMPRAAAAAGLVDRVVALDDVARTL
                     CELTGVAYTIV"
     gene            980..>1554
                     /locus_tag="VKJ77_08525"
     CDS             980..>1554
                     /locus_tag="VKJ77_08525"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HMC45353.1"
                     /translation="MKVARDSSRYVIGGLELSREEIVHKYLHLVKYVAGRISINLPPN
                     VEINDLINDGILGLIDAIEKYDDERGVKFETYAITRINGAILDALRALDWVPRAVRQR
                     ARELERVYQEIEVELGRAATEDEVAERMGLTTKELDTLMQKIRGTAVLSLEEFLPNEK
                     GYEIPLLDTLKDLENDVTSAVEAREIKAALIR"
BASE COUNT          319 a          476 c          466 g          293 t
ORIGIN      
        1 acttcatacc gaagccggat tccgcgtaca tcgacattct caaagtgcag cgcgacctcg
       61 ttgaaaagat ccggctgttc gggtcacgca cggcatattt gcgtgccatg cacggtcaag
      121 cgtcgacggg tccgccgacc ccgcgcgccg ttctcccgca gagcacgccg cttgcaccgc
      181 cgatgcaaaa gcggccgccg ctgcagttca ccccgccgcc gttatcgacg ccgtccgtac
      241 ccgtgcccgt gcgcccggcg acgacggtcc gcgtgggaca ctacgagtgc gtcgccctgg
      301 ggacatcaac cggcggcccg gtcgctcttt cgcacattct cccgaagctg ccgaaaaatt
      361 ttccggttcc gatcatcgtc gtgcagcaca tgccgcccgg ttttaccaaa ccattggccg
      421 accgcttgaa cgcctctagc cagattaccg tagtcgaggg cgccgccgga atgccgcttg
      481 cacccgggat ggccgtgatc tcgccggccg ggcagcaact tcgtttggtc cgtggcccgc
      541 ggggcgtgga aatccggctg gaccacgatg cggagaaatc gctgcacgta ccgagcgtcg
      601 atgtcatggc ggcatccgtc ggtgaggtct atggcgcggc ctcgctcggc gtgattttga
      661 cgggaatggg ccatgacgga gtcgagggcc tcaagacaat aaaagcccgc ggtggttacg
      721 ttattgggca agacgaggca tcgtcggtgg tgtacggaat gccgcgcgcg gcggcagccg
      781 caggcctggt tgaccgggtg gtcgcgctcg acgatgttgc ccgcacgtta tgcgagttga
      841 ccggggtggc ctataccatt gtctgacgaa aaataaccgt tcctatacga ttgaccggta
      901 aaacgcgagg ggacccgagc ggtagtgatt ggaataccca gggctactgg tggactcagg
      961 tccactcttg ggagcgctcg tgaaggttgc ccgcgactcg agccgctacg tcattggcgg
     1021 tttagaactt agccgggaag aaatcgtcca taagtatctt catcttgtga agtacgtagc
     1081 cgggcgtatt tctatcaacc tccccccgaa cgttgagatc aacgacctca tcaacgacgg
     1141 catcctcggc ctgatcgatg ccatcgaaaa atacgatgac gaacgtggcg tcaaattcga
     1201 aacgtacgcc atcacgcgca ttaacggcgc gattctcgat gcgttgcggg ccttggactg
     1261 ggtgccgcgc gcggtccgtc agcgcgcccg cgaactcgaa cgcgtctatc aagaaatcga
     1321 agtcgaactc ggccgcgccg cgaccgaaga cgaagttgcc gagcgcatgg gcctaacgac
     1381 caaagagctc gacacgctca tgcaaaaaat tcgcggtacc gccgtgttgt cgctcgaaga
     1441 gttcttaccg aacgaaaagg gctacgagat tccgttgctc gacacactta aggatctcga
     1501 gaacgacgtc accagcgccg tcgaagcgcg tgaaattaaa gccgcgctca tccg
//
LOCUS       DATGBK010000598         1515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_215742, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000598 DATGBK010000000
VERSION     DATGBK010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215742"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..565
                     /locus_tag="VKJ77_08530"
     CDS             <1..565
                     /locus_tag="VKJ77_08530"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HMC45354.1"
                     /translation="ALGTRDLSELLARVNDELIRSDGRMVTAVCGYADARSYTFTYAT
                     AGHPPPILFEPGRGARLLEFGGVPLGVVDGARYGSHTVLTIPGAMLVLYTDGAVEHSR
                     DLLEGERTLLRAVNEAPGQGSEPAQFIRDTIFANRHAADDVAIVTITFAEGKHNAGRQ
                     DAEEVTLSAAGPEASPGAITSIGKRAS"
     gene            562..885
                     /locus_tag="VKJ77_08535"
     CDS             562..885
                     /locus_tag="VKJ77_08535"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HMC45355.1"
                     /translation="MNQSLFEVIALEGELDIERREELARALTVTTAGPAILVDFSRVR
                     YADSTALAQLLKFRTNAERLGRPIAIVVGEPQFERVVQYAGLTDVFAIFHDRGEALSY
                     LAKQT"
     gene            882..1274
                     /locus_tag="VKJ77_08540"
     CDS             882..1274
                     /locus_tag="VKJ77_08540"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC45356.1"
                     /translation="MITRAVLQVVSRADMQAPRPLRHVLTSLLEALGVADPLRGDIVL
                     AVGEALSNAVEHAYASSEGGTVELSATTNDGNTLVVEVADRGTFIERDNNPGRGFGLR
                     IVRNIARDVVIKNDNGTRVRMTFDLGAT"
     gene            complement(1278..>1515)
                     /locus_tag="VKJ77_08545"
     CDS             complement(1278..>1515)
                     /locus_tag="VKJ77_08545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HMC45357.1"
                     /translation="PGPRNLYLVTPKRLKMQGFIVSDHNKRFEDFVRDVAPAVASGEI
                     TGLETIVNGLENAPDALLSLFAPGAHVGKLIVTI"
BASE COUNT          299 a          465 c          459 g          292 t
ORIGIN      
        1 ggcgcttgga acgcgcgatc tctccgaact gctcgcgcgg gtgaacgatg agctcattcg
       61 ttcggacggc cgcatggtca cggccgtgtg cggctatgcc gatgcgcgca gctatacgtt
      121 tacgtacgca acggccggcc atccgccgcc aatattattc gaacccggtc gtggcgcccg
      181 gctcctggaa ttcggaggcg tacccctggg tgtcgtcgac ggcgcacgat acggctcgca
      241 cacggtgcta accatccccg gggccatgct cgtgctctat accgatggcg cggtcgaaca
      301 ttcgcgcgat ttgttggaag gcgagcggac gctcttgcgc gcggtcaacg aagcgcccgg
      361 ccagggctcc gaaccggcgc aattcattcg cgatacgatt tttgcgaatc gtcacgcagc
      421 cgacgatgtt gcaattgtga caattacgtt cgccgagggt aagcacaacg cgggacgcca
      481 ggacgccgaa gaggttacgc tatcggctgc cggccccgaa gcgtcacccg gcgcgataac
      541 atcgatcgga aagcgcgctt catgaatcag tcattatttg aggttatcgc tcttgaaggc
      601 gagctcgaca tcgagcgccg cgaagaactc gcgcgcgctc tgacggtcac aacggcggga
      661 ccggccatcc tggtcgattt ttcgcgcgtg cgctatgccg actcgaccgc gctcgcgcaa
      721 ctgctcaagt ttcgcacaaa tgccgaacgc cttggccgcc cgatcgccat cgtggtcggc
      781 gaaccgcaat tcgagcgcgt cgtgcaatac gctgggctaa ccgatgtctt cgcgatcttt
      841 cacgatcgcg gtgaagcgct cagttacttg gcaaaacaaa cgtgatcacg cgggccgtat
      901 tgcaggtcgt cagccgcgcc gatatgcagg caccgcggcc gttgcgccat gtgctgacgt
      961 cgctgctcga agcgttaggc gtcgccgatc cgcttcgcgg tgatatcgtg ctcgccgttg
     1021 gggaagcact ttccaacgcg gtcgaacatg cctatgcaag cagcgaaggc ggcacggtcg
     1081 agctatcggc aacgacgaac gacggcaata cgctcgtcgt tgaagtggct gaccgcggaa
     1141 cgtttatcga acgcgacaac aatcccggtc gtggctttgg ccttcgcatc gtccgaaaca
     1201 tcgcgcgcga tgtcgtcata aagaacgaca acggtacgcg cgttcggatg accttcgacc
     1261 tcggcgccac gtagcgacta gatcgtaacg atcaacttcc caacgtgcgc gcccggcgca
     1321 aacaacgaga ggagcgcgtc gggcgcgttc tcgagaccgt tcacgatcgt ttcgaggccc
     1381 gtaatctctc cgctcgcaac agccggagct acgtcgcgca caaaatcttc aaatcgcttg
     1441 ttgtggtcgg agacgataaa gccttgcatc ttcagacgct tgggcgtgac gagatagaga
     1501 ttgcgtggtc cgggc
//
LOCUS       DATGBK010000599         1585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_30934, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000599 DATGBK010000000
VERSION     DATGBK010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30934"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..140
                     /locus_tag="VKJ77_08550"
     CDS             <1..140
                     /locus_tag="VKJ77_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HMC45358.1"
                     /translation="ANLDIMASDARKMRGERPFVMCNLKALEGLDVVVRFIEKKGLLA
                     V"
     gene            325..1536
                     /locus_tag="VKJ77_08555"
     CDS             325..1536
                     /locus_tag="VKJ77_08555"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006481696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC45359.1"
                     /translation="MAQPSKRIAVLFHIADFNDGGIESSLMQWLRIYDRARFTVTLSV
                     MFSSPAFEQRFRAQVPADVGVEILTDKPWLNLFQARRYAHQLSKLGRVGRDVFNTLAV
                     RPYVKARVAALAQRHDIIIDFDMSLRRLAGRFGAAWLGVNHFSFDARLGGRPRKMKRM
                     LAQYGRYDGIAALNRQMADEASELFNGHLRNVFVLPNAIDIDRIRENGAQVEAPPCAG
                     PYIVSVARLDEIQKDHRTLLQAYAQLVRTQGDDGLQEDLVIVGDGGFRGELEALAVEL
                     GIGERVHFTGYRNNPHAVVAHASALVLSSRYEGMPMVLLEALALGKPVISTDCPTGPR
                     EILDNGRFGLLVPIGDVDAMAEALSRLLSDCALRDGFTREALERARAYGVEASNERFV
                     ACVTRILEERG"
BASE COUNT          274 a          455 c          539 g          317 t
ORIGIN      
        1 gcgcaaatct cgacatcatg gcctccgatg ccaggaagat gcgcggagaa cggccatttg
       61 tcatgtgcaa cctgaaggcg ctggaagggc tcgacgtcgt ggttcgcttt atcgaaaaga
      121 aggggctgct cgcggtctga gtgcaggttt cggccccggg aagaaactgt tcccggtcga
      181 ttgagtgcgt taacatgtcg cgttgccctt ttttacggcc ataggcccgc ttttcggaga
      241 cctctgatcg acagccctga cacgctcctc attcgcgaca ccgctgtgcg gctgaaatcg
      301 tcgcccacag cagcctcgac gctcatggcg caaccctcca agcgcattgc cgtgctgttc
      361 cacatcgcgg atttcaacga cggcggcatc gaatcctcgt tgatgcaatg gctgcggatc
      421 tacgaccgcg cgcgcttcac ggtgacgctg tccgtgatgt tttcatcccc cgcgttcgaa
      481 cagcgctttc gcgcgcaggt tcccgcggac gttggcgtcg agattctcac cgacaaaccg
      541 tggctcaacc tgttccaggc acgtcgctac gcgcaccagt tgagcaaact cggccgtgtc
      601 ggccgcgacg tcttcaacac gctcgccgtg cgcccttacg tgaaggcgcg ggtggcagcg
      661 ctggcgcagc gtcacgacat catcatcgac ttcgacatgt cgctgcgccg tctggctggc
      721 cgcttcggcg cggcgtggct cggcgtgaac catttcagct tcgatgcacg tctgggcgga
      781 cggccccgga agatgaaacg gatgctcgcg caatatgggc gctacgacgg gattgccgcg
      841 ctgaaccgcc agatggccga tgaagcgagc gagctgttca atggccactt gcgcaacgtg
      901 tttgtgctgc cgaatgcgat cgatatcgac cgcattcgcg agaacggcgc gcaagtggaa
      961 gcgccgccgt gcgccgggcc gtatatcgtt tcagtggcgc ggctcgacga gatccagaag
     1021 gatcaccgga ccttgttgca ggcttacgcg cagctagtca ggacgcaggg tgacgatggc
     1081 ttgcaggaag acctggtgat cgtcggcgat ggtggttttc gcggcgagct ggaagcgctg
     1141 gcggtggagt tggggatcgg ggaacgggtg catttcacgg ggtaccggaa caatccgcac
     1201 gcggtggtgg cgcatgcgag tgcgctggtg ctcagctcgc gttacgaagg catgccgatg
     1261 gtgttgctcg aggcgctggc gcttggcaag ccggtgattt caaccgattg cccgacgggg
     1321 ccgcgggaga tcctggacaa cggtcggttc gggctgctgg ttcctatcgg cgatgtggac
     1381 gccatggcag aggcgctgtc gcggttgtta tcggactgtg ccctgcgcga tggctttacg
     1441 cgcgaagcgc tggaacgggc gcgggcgtat ggcgtggagg cgagcaatga gaggttcgtt
     1501 gcttgcgtga cgcggatttt ggaggagcgc gggtaggcta cccgggttgt tcgcacgcgc
     1561 agccagaagc tatacggcgc gaacg
//
LOCUS       DATGBK010000600         3920 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_331181, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000600 DATGBK010000000
VERSION     DATGBK010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3920
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331181"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..1857
                     /gene="recJ"
                     /locus_tag="VKJ77_08560"
     CDS             151..1857
                     /gene="recJ"
                     /locus_tag="VKJ77_08560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018435423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008297 - single-stranded DNA
                     exodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HMC45360.1"
                     /translation="MTRIVTRAPSPADAAVLVRHGVHPVIARLYASRGVCSPEEIETE
                     LKKLHAPVGLKGCDEAAAFLADALAAKRRMLVVADYDCDGATACAVAVRGLRMFGAQI
                     DYLVPNRFEYGYGLTPEIVALAASRAGGKPDLLITVDNGIASVDGVEAANALGIDVLV
                     TDHHLPGDDLPPARAIVNPNQPGCTFESKCIAGVGVIFYVLLALRAELRRRNAFTTDA
                     PEPRLDGLLDLVALGTVADVVKLDPNNRILVAQGLKRIRAGRMQPGIAALFRVAARDA
                     RAASGFDLGFALGPRLNAAGRLSDMSLGIECLITDDIGRAWELAQQLDSINRERREIE
                     AGMQEQALEELASIEPADSATLTLFNPAWHQGVIGIVAGRLKEKFHRPSFTFAHADES
                     GVLSKGSGRSIPGFHLRDAVDLISKREPGMIVKFGGHAMAAGMTIVTADIPRFTAAFE
                     AVGREWLTSDALSRVVETDGELEDAYFTPQFVELIDGAVWGQGFPAPVFSGEFEVASQ
                     ALVKDKHLKLQLRRGQQRFNAIWFNHTETLPTRTVVAYRLVSDTWNGVARVQMIVEHA
                     VG"
     gene            1963..3067
                     /gene="prfB"
                     /locus_tag="VKJ77_08565"
     CDS             join(1963..2043,2045..3067)
                     /gene="prfB"
                     /locus_tag="VKJ77_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998981.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HMC45361.1"
                     /translation="MEAERLNAIENLLADLRRRAGELRGYLDYDAKALRLDEVNRVLE
                     DPNVWNDSKNAQALGREKKLLDNVVTTITNLDNDLRDTQDLFDMAREENDEDTLVSCE
                     ADTAALEKRVEDMEFRRMFSNPADPNNCFIDIQAGAGGTEACDWAAMLMRQYLRYCER
                     KGFKTEVLEESDGDVAGIKSATIKVEGEYAYGFLRTETGVHRLVRKSPFDSSGGRHTS
                     FSSIFVYPEVDDSIEIDINPADIRTDTYRASGAGGQHINKTDSAVRLTHAPTGIVVQC
                     QNDRSQHRNRAEAMQMLKAKLYEFEMRKRQVEKDNLENSKTDVGWGHQIRSYVLDNSR
                     IKDLRTNVEISNTKAVLDGDLDDFIGASLKQGV"
     gene            3358..>3920
                     /locus_tag="VKJ77_08570"
     CDS             3358..>3920
                     /locus_tag="VKJ77_08570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HMC45362.1"
                     /translation="MTELTQPDAASEPEENQILAERRDKLRALREQGIAYPNDFRPTH
                     QAAALQSDYADKDKDALEAELLQVAVAGRMMLKRVMGKASFATVQDGSGQIQFFITPA
                     DVGQEVYDAFKKWDLGDIIATKGVLFRTNKGELSVRCTELRLLTKALRPLPDKFHGLA
                     DQEMRYRQRYVDLIVTPETRQTFIART"
BASE COUNT          846 a         1168 c         1180 g          726 t
ORIGIN      
        1 ctgtgcagcg acaccggctc cgtgtcgctg accgtcacgc gcggcgcgtt gcgcaaattc
       61 tggcggcggc gtccgatcgc agcgctgctt atcgaatgaa tgatgcgaac aaacgaagcg
      121 aatgaaacta atcatcaccg gcctgtccgc atgacccgaa tcgtcacccg tgcaccctct
      181 cccgccgatg ccgccgtcct cgtacggcat ggcgttcatc ctgtcattgc gcgtctgtac
      241 gcgtcgcgtg gtgtgtgttc gccggaggag atcgagaccg aactcaagaa attgcacgcg
      301 ccggtcgggc tgaaaggctg cgatgaagcc gccgcctttc tcgccgacgc gctcgcagcg
      361 aaacgccgca tgctggtcgt cgccgattac gattgcgacg gcgccaccgc gtgcgccgtc
      421 gccgtgcgcg gcttgcggat gttcggcgcg cagatcgatt acctggtgcc gaaccggttc
      481 gaatacggct atggcctgac acctgaaatc gtcgcgctgg ccgcgagccg cgcgggcgga
      541 aagccggatc tgctgatcac cgtggacaat ggcattgcga gcgtcgatgg cgtcgaggcc
      601 gcgaatgcgt tgggtatcga cgtgctggtg accgatcacc atctacccgg cgatgatctc
      661 ccgcccgcac gcgcgatcgt caatccgaac cagccgggct gtacgttcga gagcaagtgc
      721 atcgcaggcg tgggggtgat cttctacgtg ctgctcgcat tgcgagccga gttgcgtcgt
      781 cgcaatgctt tcaccaccga cgctcctgaa ccgcgtctgg acggcctgct cgacctggtt
      841 gcgctcggca cggtcgccga cgtcgtgaag ctcgatccga acaaccggat cctggtcgcg
      901 cagggcctga agcgaattcg cgcgggtcgg atgcaacccg gcattgcggc gctgtttcgc
      961 gtggccgcgc gcgatgcacg cgccgcatcg ggattcgatc tcggttttgc gctggggccg
     1021 cggctgaatg cggcaggacg gttatcggat atgtcgctcg ggattgaatg cctgatcacc
     1081 gatgacatcg gccgcgcgtg ggaattggcg caacaactgg attcgatcaa tcgagagcgg
     1141 cgcgagatcg aggccgggat gcaggaacag gcgcttgagg aactggcgag tatcgaaccg
     1201 gcggattccg ccacgttgac gctgtttaat ccggcgtggc atcagggcgt gatcgggatt
     1261 gtcgcgggac ggctgaagga gaaatttcac cggccatcgt tcacatttgc tcatgccgac
     1321 gagagcgggg ttttatcgaa gggatcgggg cgctcaattc caggatttca tctgcgcgat
     1381 gccgtcgacc tgatttccaa gcgcgagccc gggatgatcg tgaaattcgg cggccacgcg
     1441 atggcggcgg ggatgaccat tgttaccgct gatattccgc ggttcaccgc ggcgtttgaa
     1501 gccgtcggac gcgagtggtt aacgtcggac gctttgtcgc gggtggtgga aaccgacggc
     1561 gagctcgagg acgcttattt cacgccgcag tttgttgaat tgatcgatgg cgcggtttgg
     1621 gggcaaggct ttccggcgcc ggtgttttcc ggggagtttg aagtggcgtc ccaggcgctg
     1681 gtcaaggaca agcatttgaa gctgcaattg cggcgcgggc agcaacggtt caacgctatc
     1741 tggtttaatc acacggaaac gctgccgact cgcaccgtcg tggcgtaccg gctggtttcc
     1801 gacacctgga atggcgtcgc gcgggtacag atgattgtcg agcatgcggt tgggtgaaga
     1861 aacgtcggcc tggccaaggc gttcatccct aaccacgcgc caatgctccc ctctcgctaa
     1921 gctataattt cgctcttagc caaaaaacct gaaaacgatc aaatggaagc ggaacgtcta
     1981 aacgcaatcg agaacctcct cgccgacctg cgccgtcgcg ctggcgagct ccgggggtat
     2041 ctttgactac gacgccaagg ccctgcgtct ggacgaagtc aaccgggtac tagaagaccc
     2101 gaacgtctgg aacgactcga aaaacgccca agccctgggc cgcgagaaaa agctgctgga
     2161 caacgtcgtc acgaccatca cgaacctcga taacgatctt cgcgacacgc aagatctctt
     2221 cgacatggcc cgcgaagaaa acgacgaaga cacgctcgtc tcatgcgaag cggacacggc
     2281 agcgctcgaa aaacgcgttg aagacatgga attccgccgg atgttctcga acccggccga
     2341 cccgaacaac tgctttatcg atatccaggc cggcgccggc ggcacggaag cgtgcgactg
     2401 ggccgcaatg ttgatgcgcc agtaccttcg ctactgcgaa cgcaaaggtt tcaagaccga
     2461 agttctcgaa gaatccgacg gcgatgttgc cggtatcaag agcgcgacca tcaaggtcga
     2521 aggcgaatac gcttacggtt tcctgcgtac ggaaacgggc gttcatcggc tcgtgcgcaa
     2581 gtcgcccttc gattcatcgg gtggacgcca tacgtcgttt tcatcgatct tcgtgtatcc
     2641 ggaagttgac gattccatcg aaatcgatat caaccccgcc gacattcgca ccgacacgta
     2701 tcgcgcgtcc ggcgccggcg gccagcacat caacaagacc gattccgccg tgcgcctgac
     2761 tcatgcgcct accgggattg tcgtgcagtg ccagaacgac cgttcgcagc accgtaaccg
     2821 cgccgaagcc atgcaaatgc tgaaagcgaa gctgtacgag ttcgagatgc gcaagcgcca
     2881 ggttgagaaa gacaacctgg aaaacagcaa gaccgacgtg ggctggggtc accagatccg
     2941 ctcgtacgtg ctcgacaaca gccgcatcaa agaccttcgc acgaacgtgg aaatcagcaa
     3001 cacgaaagcc gtgctggatg gtgacctgga cgacttcatc ggcgcaagtc tcaaacaggg
     3061 cgtataagca aaactcaagc aaacggcgcg caaacggagc ggcttcagta acacgccgcc
     3121 gcgccaactg catcgtctcg acgtcgcttc attcacggca atccatcgca gcattgcatc
     3181 gctaatattt gcgagcatcc gtgtggcctg tgtttcaacg ctgggtttca acgctcaagt
     3241 tcacgcggcc taatgcaaac agcatgcaaa cagcatgcaa acagcacgca aacaacctgg
     3301 acgcagcatc aggccgacga ccaagccgca ttcatcgcac tcaaagccaa acacatcatg
     3361 accgaactga ctcagccgga cgcagcttcc gaaccggaag aaaaccagat cctcgccgag
     3421 cgtcgcgaca aactccgtgc gctgcgcgag caaggaatcg cgtatccgaa cgatttccgg
     3481 ccgactcacc aagccgccgc gctgcaatcc gattacgccg ataaagacaa ggacgcgctc
     3541 gaagccgagc tgctgcaagt cgcggtcgcg ggccggatga tgttgaaacg tgtcatgggt
     3601 aaggccagtt ttgcgacggt gcaagacggc agcggccaga tccagttctt catcacaccc
     3661 gccgacgtcg ggcaggaagt ctacgacgca ttcaagaagt gggacctggg cgacatcatc
     3721 gcgacgaagg gtgttttgtt ccgcacgaac aagggcgagt tgtcagtgcg ttgcacggaa
     3781 ctgcgcctgc tgaccaaagc gctgcgccct cttcccgata agttccatgg tctcgccgat
     3841 caggaaatgc gctatcgcca gcgttatgtc gacctgatcg tgacgccgga aacgcgtcag
     3901 acgtttattg cgcgcacgaa
//
LOCUS       DATGBK010000601         1540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_53876, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000601 DATGBK010000000
VERSION     DATGBK010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53876"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..1368)
                     /locus_tag="VKJ77_08575"
     CDS             complement(85..1368)
                     /locus_tag="VKJ77_08575"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-tagatose-bisphosphate aldolase, class II,
                     non-catalytic subunit"
                     /protein_id="HMC45363.1"
                     /translation="MNSIVSRLSNAHPASAWLAGIYSICSAHPWVLEAAMRQALEDET
                     PLLIESTSNQVDQYGGYTGMKPADFVDFVRSIAERVGFPHEHLILGGDHLGPNAWRHL
                     PAEEAMQRADALIDAYASAGFTKIHLDTSMSCADDPERLSDAVVAARAARLCAVAEAA
                     VKRAGLGVSPVYVIGTEVPVPGGAAEELDIVEPTSREAAIETALIHRQAWQEHGVQDT
                     WPRVIALVVQPGVEFDHTKVIDYVPARAESLKSALDDLPGMVFEAHSTDYQTPEALSA
                     LVRDGFRILKVGPGVTFALREALYALADIETELIGAHKRSNLREVVERVMLSKPGYWE
                     KYYHGDAEQQRVLRTYSYSDRVRYYWADAEIGAAAQTLLDNLSALKIPENLLSQFLPE
                     QYWSVRRGQLKNEPLALVQDRVRQVIRTYAAACRA"
BASE COUNT          319 a          492 c          426 g          303 t
ORIGIN      
        1 gtcgatgact tcgcccagag cgagcgcggc gccggtggtt tcggcagcac gggcaagcac
       61 tgagctttag gcctgcccta caagttatgc gcggcacgcc gccgcgtacg ttcgaataac
      121 ctgccgcacg cgatcttgca ctagcgcgag cggctcgttc ttcagctgac cgcggcgcac
      181 cgaccaatac tgctcgggca agaactggct gagcaaattc tccggaatct tcagagcgct
      241 caggttgtcg agcagcgttt gcgcagccgc gccgatctct gcatcggccc agtaataacg
      301 cacgcggtcg ctatagctgt aagtgcgcaa cacgcgttgc tgctcagcat cgccgtgata
      361 atacttttcc caatagccag gtttgctcag catcacgcgc tcgactactt cgcgtagatt
      421 cgatcgttta tgcgcaccga tcaattctgt ttcgatatct gccaatgcgt acaacgcctc
      481 gcgcaatgcg aacgtcacgc ccggaccgac cttgagaatg cgaaagccat cgcggactaa
      541 agcgcttagc gcttcgggcg tttgataatc ggtggaatgc gcttcaaaga ccatgccggg
      601 cagatcatcg agcgcgctct ttaacgactc ggcgcgcgca ggtacatagt cgatcacctt
      661 cgtgtgatca aactccacgc cgggttgcac aacgagagca atcacgcgcg gccacgtgtc
      721 ctgcacgccg tgttcttgcc aagcttgtct gtggatcaaa gccgtttcaa tcgccgcttc
      781 acgcgaggtc ggctcaacga tgtccaactc ttccgccgcg ccgcccggca cgggtacttc
      841 ggtgccgatc acgtacacgg gactgacacc gagacccgcg cgcttcaccg cggcctcggc
      901 tactgcgcac aagcgcgccg cccttgcagc aaccacggca tccgataagc gctcaggatc
      961 atcggcgcac gacatgctgg tatcgaggtg aatcttcgtg aagcccgccg atgcatatgc
     1021 gtcgatcaac gcatcggcac gttgcatggc ttcttcagcg ggaaggtggc gccaggcgtt
     1081 tggcccgaga tgatcgccgc caagaatcag atgctcgtgc gggaagccaa cgcgctcggc
     1141 aattgaacga acgaagtcca caaaatcagc cggcttcatg cccgtataac cgccgtactg
     1201 atcgacttga ttcgatgtcg actcgatcag caatggcgtc tcatcttcaa gcgcttgccg
     1261 catggccgct tccagcaccc acggatgcgc ggaacaaatc gaatagatac cggcaagcca
     1321 tgccgacgcc ggatgtgcat tgctcaaacg cgagacgatc gagttcatga cttcactccg
     1381 aggctgattg caggaaggta tcgagttcgg cgaacgtcgc cgtgccttcc attggaccct
     1441 tcacaccgac cgcgcgtgcg ccgcttgcgc acgcgtattt caacgcggcg tccacgtcca
     1501 tgccctgcgc gcggcaactg atatacgtcg cgccgaagca
//
LOCUS       DATGBK010000602         1579 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_123157, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000602 DATGBK010000000
VERSION     DATGBK010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123157"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1557)
                     /locus_tag="VKJ77_08580"
     CDS             complement(<1..1557)
                     /locus_tag="VKJ77_08580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC45364.1"
                     /translation="MVGRHRSSVLMRLLATVFLFSCTVTLTLTALQLYRDYHRGVMLV
                     ESRLAEIDSSYRGSLGEALWRLDRPQLELQLDGILHLPDIRLAEVTESIASDSSMVVS
                     AGSHSRGPVMVRSFPIVYRIQGHEESIGTLRVEATLANLYNELFRTALVILLSQGANT
                     FLVSLFTIYIFSRLVMRHLATVARRVESYDFRQAPQAFTLHRRRPRRPDELERVVAAF
                     DSMCARLHRAYNDEREAAEGREARRTAEAANRAKSEFLANMSHELRTPLNGILGYAQV
                     LGRDRTLGERQRDGLGVIQRSGEHLLALINDILDIAKIEAGKMPFDIVAVPLPGLLGD
                     VEEIIRVKAEQKQLVFVCEVARDVPNAVRADERRLRQVLLNLLANAVKFTDSGYVSLR
                     VVPLLGGRVRFSVEDTGIGIGDMQHELIFEPFEQTGDEQRRRGGAGLGLGISRQLVRS
                     MGSDILFESRKGEGSAFWFDLEAVLPVPSVSAEPHAAWVVTGYTGARRSVLVIDDVDT
                     NRAVVIDMLGQ"
BASE COUNT          291 a          513 c          486 g          289 t
ORIGIN      
        1 ctgccccagc atgtcgatca ccaccgcgcg gttggtgtcc acgtcgtcga tgaccagcac
       61 actcctgcgc gctcccgtgt agccggtgac cacccacgcg gcatgcggct ctgccgacac
      121 ggacggtacc ggaagaactg cttccaggtc gaaccagaag gcgctgccct cgcctttgcg
      181 gctctcgaag aggatgtcgc ttcccatcga acgcacgagt tgccggctga tgccgagccc
      241 aagcccggct cctccccgac gccgttgttc gtcgccggtt tgctcgaagg gctcgaagat
      301 cagctcgtgt tgcatgtcgc caatgccgat tccggtgtct tccaccgaga agcggacccg
      361 gccacccagc aagggcacca cgcgcagact cacgtagccg ctgtcggtga acttcactgc
      421 gtttgccagc aggttgagca gtacctggcg caaccgccgt tcgtcggcac gcacggcgtt
      481 aggcacgtcg cgtgccacct cgcacacgaa gacgagctgc ttttgctcag ccttcacgcg
      541 aatgatttcc tcgacgtcac ctagcagccc ggggagtggc accgcaacaa tatcgaacgg
      601 cattttgccg gcctcgatct tcgcaatatc gagaatgtcg ttgatcagcg cgagcagatg
      661 ttcgccgctg cgttgaatca cgccgagccc gtcccgttgc cgttcgccaa gcgtgcggtc
      721 ccgtcccagg acttgcgcgt accccaggat gccgttcagc ggcgtgcgca attcatggct
      781 catgttggcg aggaattcgg atttagcacg attggccgcc tcggccgtgc gccgggcttc
      841 acggccctcg gccgcttccc gctcgtcgtt ataggcgcgg tgaaggcgcg cgcacatgga
      901 gtcgaacgcg gccactaccc gttcgagttc gtctggacgg cgtggccggc ggcgatgcag
      961 cgtgaaggct tgcggcgcct gccggaagtc gtaactttcg acgcgccgcg ccaccgtggc
     1021 gagatggcgc atgacgagcc gcgagaaaat gtagatggtg aacagcgaca cgagaaacgt
     1081 attggcgccc tggctcagca agatcaccag tgctgtcctg aacagttcgt tgtacaggtt
     1141 ggcgagggtt gcctcgacgc gcagcgtgcc gatcgattcc tcgtggccct ggatgcgata
     1201 cacgatcgga aaactgcgca ccatgaccgg cccgcgagaa tggcttccgg cggagaccac
     1261 catggagctg tcgctcgcga tcgactcggt gacttcggcc agccggatgt ccggcaaatg
     1321 gagaatgccg tcgagctgga gttcgagttg cggccggtcg agccgccaga gcgcttcgcc
     1381 cagactaccc cgataactgc tatcgatctc cgccagccgg ctttcgacga gcatcacccc
     1441 ccggtgataa tcgcgataca gttgaagcgc tgtgagcgtg agcgtgaccg tgcaactgaa
     1501 caggaacact gtagcgagca gccgcatcaa gacactgctg cggtggcggc cgaccagatc
     1561 ccaaagtccg ccgaatgtg
//
LOCUS       DATGBK010000603         4944 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_146149, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000603 DATGBK010000000
VERSION     DATGBK010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4944
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146149"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..717)
                     /locus_tag="VKJ77_08585"
     CDS             complement(76..717)
                     /locus_tag="VKJ77_08585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit B"
                     /protein_id="HMC45365.1"
                     /translation="MAWDRNQMAARAGKELQDGFYVNLGIGLPTLVANFVPAGMEVWL
                     QSENGLLGIGPSPTEEEVDADLINAGKQTVTTLPGSSIFSSADSFAMIRGGHVNLAIL
                     GAMQISKTGDLANWMIPGKMIKGMGGAMDLVAGVKRVIVLMEHVAKGDQHKILDACTL
                     PLTGVGVVDRIITDLGVIDVTEAGLKLVELAPGVSVDEIQQKTGAPLDVSGVK"
     gene            complement(720..1424)
                     /locus_tag="VKJ77_08590"
     CDS             complement(720..1424)
                     /locus_tag="VKJ77_08590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009891596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit A"
                     /protein_id="HMC45366.1"
                     /translation="MNKVYPSAKEALDGIVKDGQTFAVGGFGLCGIPEALIAALRDTG
                     VQGITCISNNAGVDGFGLGLLLETRQVKKMISSYVGENKEFERQYLAGELELEFTPQG
                     TLAEKLRAGGSGIPAFFTNTGYGTVIADGKETRQFGDNHYVLEHSLTADVALVKAWKA
                     DKSGNLIYRRTARNFNPMCAMAGKITVVEVEEIVETGALDPDAIHTPGIFVQRIVLNA
                     HPEKRIEQRVVRAKGD"
     gene            1631..2176
                     /locus_tag="VKJ77_08595"
     CDS             1631..2176
                     /locus_tag="VKJ77_08595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HMC45367.1"
                     /translation="MRQLDYQTAFHLAPVGLVLSRERIIEDCNAQLCAIFGVAPQALL
                     GQSFQVLYPSPVEFERIGARIAALMQRQGSYADDRIMKRANGELFWCHVTGRSLDLSA
                     PHAAGVWTFEDLSATRRVAIELTPREREIAAQLVTGKTSKQIGRALDISSRTVDIYRS
                     RLMRKYDTGNATELLQRLLGD"
     gene            complement(2173..2640)
                     /locus_tag="VKJ77_08600"
     CDS             complement(2173..2640)
                     /locus_tag="VKJ77_08600"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HMC45368.1"
                     /translation="MSQVLDQASVTTPAPSGFHRVIDLSMPLRWGDMDAFGHVNNTVY
                     FRFMEEVRISWFRQLAIAGANVEGQGPVIVNASMEFLRQLHYPGDVIGSMFVGPPGRS
                     SFDTRFELFRADDPGTLYARGTAKCVWIDYAAAKSVQIPDLLRHAIESAGTGA"
     gene            complement(2637..3410)
                     /locus_tag="VKJ77_08605"
     CDS             complement(2637..3410)
                     /locus_tag="VKJ77_08605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45369.1"
                     /translation="MGRSINLEGKCALITGASSGLGKRFAQVLSQAGARVVLASRRTE
                     RLKELRAEIEASGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVSTQQKL
                     TDVTPSDFDFVFDTNTRGAFFVAQEVAKRMIMRGNGTVKPGYRIINIASMAGLKTLPQ
                     IGIYSMSKAAVIHMTKAMAQEWGRHGINVNAICPGYIDTELNHHHWKSEAGQKLLAML
                     PRRRVGTPEDLDGLLLLLAADESQFINGSVIAADDGFGL"
     gene            3625..>4944
                     /locus_tag="VKJ77_08610"
     CDS             3625..>4944
                     /locus_tag="VKJ77_08610"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HMC45370.1"
                     /translation="MTPESLIEQYGPRESMEYDVVIVGGGPAGLSAAIRLKQLAQEKG
                     VELGVCVLEKGSEIGAHILSGAVMDPRGLSELLPDWKAQGAPLDVEVTEDRFLFLSKD
                     SAKQVPNWLLPDNFKNHGNYVVSLANVTRWLGQQAEALGVEIFPGFPAAEVLYTEDGA
                     VRGVATGNMGVGKDGEPTGNFQLGMELHAKYTLFCEGARGNLGRQLTDKFKLGRDADP
                     QVYGLGIKELWQIDPSKHKPGLVIHTAGWPLETDTYGGSFLYHMDDNQVMVGFVVGLG
                     YSNPYLSPFEEFQRYKTHPAIRTFLEGGKRVSYGARAITAGGLMSLPKLVFPGGALAG
                     DDAGFLNASRIKGSHAAIKSGKMAAEAAFDAVQAGRQADELSAYPEAFNSSWLKTELY
                     RARNFKQWMSKGLYLGTFMVGLEQKVLGGNVPWTLHHQHADNETLKPA"
BASE COUNT         1001 a         1516 c         1440 g          987 t
ORIGIN      
        1 aaaaaaccgt cccaacttac gtcggaacgg ttcatttcgg ccggaagaac aaaccgaagc
       61 cgatgcagaa ataccttatt tgacgccgct tacatccagc ggcgcaccgg ttttctgctg
      121 gatctcgtcc acactgacgc ccggcgccag ttcgacgagc ttcagtccag cctcagtgac
      181 atcgattacg ccaagatccg taatgatccg atcgaccacg cccacgcccg tcagaggcaa
      241 cgtacacgcg tcaagaatct tgtgctggtc gcccttcgcc acgtgctcca tcagcactat
      301 cacgcgttta acaccggcga ccaggtccat cgcgccgccc atgcccttga tcatcttgcc
      361 ggggatcatc cagttggcca ggtcacccgt cttgctgatc tgcatcgcgc ccagaatggc
      421 caagttcacg tggccgccac gaatcatcgc gaacgaatcc gccgacgaaa aaatcgacga
      481 gcccggcagc gtggtcaccg tctgcttgcc ggcgttgatc aggtcggcat cgacttcttc
      541 ttccgttggc gacggtccga tgccaagcaa gccattctcc gattgcagcc acacttccat
      601 tcccgccggc acgaagttcg ccaccagcgt gggcagccca atgcccaggt tcacgtaaaa
      661 gccatcctgc aattccttgc ccgcccgcgc ggccatctgg ttccggtccc atgccatgat
      721 cagtctcctt ttgcgcgcac gacgcgttgt tcaatgcgtt tttccggatg cgcgttcagc
      781 acgatgcgct gcacgaagat gcccggcgtg tgaatggcgt cgggatcgag ggcgcccgtt
      841 tccacgattt cctccacttc gaccaccgtg atcttgccgg ccatggcgca catcgggttg
      901 aagttacggg ccgtgcggcg ataaatcaaa ttgcccgatt tatcggcttt ccacgccttg
      961 acgagcgcca cgtcagcggt gagcgaatgt tcgagcacgt agtggttatc gccgaattga
     1021 cgcgtttcct tgccgtccgc gatcaccgtg ccgtaacccg tgttggtgaa gaacgccgga
     1081 atgcccgagc cgcctgcgcg cagcttttcg gccagcgtgc cctgcggcgt gaattcaagc
     1141 tcgagttcgc cggccagata ctggcgttcg aactccttgt tttcgccgac gtacgacgag
     1201 atcattttct tgacctgacg ggtttcgagc agcagcccga gtccgaaacc gtcaacgccc
     1261 gcgttgttgc tgatgcaggt aatgccctgg acgcccgtgt cgcgcaaagc cgcgatcagt
     1321 gcctcgggga tgccgcacag accaaaacca ccgacggcga acgtctgccc gtccttcacg
     1381 atgccatcga gcgcctcttt cgcgctggga tagaccttgt tcatctgttt gtcccttcct
     1441 gatctggatg aaatccgttt atttgagcca tctcacgcgc gagacaaccg cacgagacaa
     1501 cttcttgacg tggcaaaaga gtacgacgcc ggatcgatcc ggcacaatac gcaaaaatac
     1561 ataagtaatt gccgtactgc acggcgatga aatagttaaa cgcgggttaa acccgacacg
     1621 tgcgagtcaa atgcgtcaac tggattacca aacagcgttt catcttgcgc cagtcggact
     1681 ggtgttgtca cgggaacgga tcatcgaaga ctgcaatgcg cagctctgcg cgattttcgg
     1741 tgttgcgccg caggccttgc tgggccagtc gttccaggtg ctgtatccgt cgccggtgga
     1801 gttcgagcgg atcggcgccc ggatcgctgc gttgatgcag cgccagggca gttacgccga
     1861 cgaccgcatc atgaaacgcg cgaacggcga attgttctgg tgccatgtga ccgggcgctc
     1921 gctcgatctg agcgcgccgc acgctgccgg tgtctggacc ttcgaggatt taagcgccac
     1981 ccgccgggtt gctatcgaac ttacgccgcg cgaacgtgaa attgccgcgc agctcgtcac
     2041 cggcaagacc agcaagcaga tcggccgcgc gctggatatc agctcgcgga ccgttgatat
     2101 ctaccggtcg cggctcatgc gcaaatacga cacgggcaac gcgaccgagt tgctgcaacg
     2161 gctgttggga gactaggcgc ccgttccagc cgattcaatg gcatggcgca acaggtcagg
     2221 aatctgcacc gatttcgccg ccgcatagtc gatccaaacg catttcgccg tgccgcgggc
     2281 gtacagcgtc ccgggatcgt cggcacgaaa cagctcgaag cgcgtgtcga aactgctgcg
     2341 gcccggcggc cccacgaaca tgctgccgat gacatcgccg ggatagtgga gctgcctcag
     2401 gaattccatc gacgcattca cgatcaccgg cccctgccct tcgacgttgg caccggcaat
     2461 ggccagttgc cggaaccacg aaatccgcac ttcctccatg aaacggaagt agaccgtgtt
     2521 gttcacgtgg ccgaatgcgt ccatgtcgcc ccatcgcagc ggcatggaca gatcgattac
     2581 gcgatgaaaa ccgctcggcg ccggcgttgt tacgctcgct tggtcaagaa cctggctcat
     2641 aggccaaacc cgtcatcggc agcgatcacc gagccgttga tgaactgcga ttcatcggcc
     2701 gcgagcagca gcagcaagcc atccaggtct tcaggcgtac ccacccggcg acgcggcagc
     2761 atggccagca gcttttggcc cgcctcgctt ttccagtgat ggtgattgag ttcggtatcg
     2821 atataacccg ggcagatcgc gttcacattg atgccgtgac gaccccattc ctgcgccatt
     2881 gccttcgtca tatgaatgac ggcggccttg ctcatggagt aaatgccgat ctgcggcaag
     2941 gtcttgagcc ccgccatgga cgcgatgttg atgatccggt agcccggttt gaccgtgccg
     3001 ttgccgcgca tgatcatccg tttcgccact tcctgcgcga cgaaaaacgc gccgcgcgtg
     3061 ttggtatcga aaacaaagtc gaagtccgac ggcgtcacgt ccgtcagctt ttgctgggtg
     3121 gacacgccgg aattgttcac gaggatgtcg atcgtgccag cctccgtctc cgcgtgcgcg
     3181 acggccgcct tgatgctttg gtaatcagtg acgtcgagcg acacgacgtg cgccgcaccg
     3241 ccggatgctt cgatttcagc gcgcagttcc ttcaggcgct cggtgcgccg gcttgccagc
     3301 acgacccgcg cgcccgcctg cgatagcact tgtgcaaagc gcttgccaag tccgctggag
     3361 gcgccggtga tcagcgcgca tttgccttcc aggttgatcg aacggcccat tgtttttcct
     3421 tggttgaaag cgattgaggt gcccgggatc gaaccgactt gacgccgttc gccccaaata
     3481 agcatcgaat cgacacagcc gatatgctat cctaaaataa tacgatcgtg ctaatttcag
     3541 gatcgtcggt tgcaccctgc gaagggttcc ctgacaatac gcgatcccca aaaaaagcat
     3601 tctaacgtta gacaggagca ttggatgacc ccggagagtc tcatcgagca gtacggtccc
     3661 cgtgaatcca tggagtacga cgtcgtgatc gtgggcggcg gtcctgcggg gttatcggcg
     3721 gctattcggc taaagcaact cgctcaggaa aaaggcgtcg aactgggcgt ctgcgtgctg
     3781 gaaaaaggct ccgagatcgg tgcgcacatc ctctcgggcg ctgtgatgga cccgcgcggg
     3841 ttgagcgaat tgctccccga ctggaaggcc cagggtgcgc cgctcgatgt ggaagtcacc
     3901 gaagaccgct tcctgttttt gtcgaaggat agtgcaaagc aagtcccgaa ctggctgctc
     3961 cccgacaact tcaagaacca cggcaactat gtcgtgagcc tggcgaacgt cacgcgctgg
     4021 ctgggacaac aagccgaagc gctgggcgtt gagatcttcc cgggctttcc tgcggccgaa
     4081 gtgctctaca cagaagacgg cgccgtgcgc ggcgtggcga cgggcaacat gggcgtgggc
     4141 aaggatggcg agccgaccgg caacttccag ctcggcatgg aattgcacgc gaaatacacg
     4201 ttgttctgcg aaggcgcacg cggcaatctg ggccgtcagc tcaccgataa attcaagctc
     4261 ggccgcgatg ccgatccgca agtctatggc ctcggcatca aagaactgtg gcagatcgat
     4321 ccgtcgaaac acaagccggg cctggtgatt cacacggccg gctggccgct ggaaaccgat
     4381 acgtatggcg gctcgttcct ctatcacatg gacgataacc aggtgatggt gggctttgtc
     4441 gtcgggctgg ggtattcgaa tccgtacctg tcgccgttcg aggaattcca acgctacaag
     4501 acgcatccgg ctatccgcac cttccttgaa ggcggcaagc gcgtgtcgta cggcgcacgg
     4561 gcgatcacgg ccggtgggct gatgtcgttg ccgaagctgg tgttcccggg cggagcgctg
     4621 gctggagacg acgccgggtt cctgaatgca tcgcgaatca agggcagtca cgccgcgatc
     4681 aagtccggca aaatggccgc cgaagccgcg ttcgacgctg tgcaagccgg tcgtcaagcc
     4741 gatgaactga gtgcctaccc cgaagcgttc aatagctcgt ggctcaagac cgagctatat
     4801 cgggcgcgta atttcaagca gtggatgagc aagggcctgt acctgggcac gttcatggtc
     4861 gggctcgagc agaaggtatt gggcggcaat gtgccgtgga cgctacatca tcagcacgcg
     4921 gataacgaaa cgctcaaacc cgcg
//
LOCUS       DATGBK010000604         1658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_146171, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000604 DATGBK010000000
VERSION     DATGBK010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146171"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..1581
                     /locus_tag="VKJ77_08615"
     CDS             172..1581
                     /locus_tag="VKJ77_08615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HMC45371.1"
                     /translation="MEANVNERWRDAVRTVHGVESKYKRLVKAIATDIESAALASGAR
                     LPPQREVAADLAISVQTVTNAYKELERQGLIRCEVGRGSFVAARVTETMSKYMLDTAE
                     REVIDFSIARIVHTPEHDAMWRKVCATLATVEDQPWIRAFRPIAGFEHHRQAGAAWLA
                     TLGMPANPETLLVTNGAAHGIFLALASFVGPGDTVLCESLTDHGVIGSANVLGFTLKG
                     LEIDEYGIRPEHFEEMCDSERISALVCTPTLNNPTVALMPDSRRRAIARIAERYGVYV
                     IEDDVYGALPAKTQTPIASLIPELSFYCTSMTKSVLTGLRIGYLTMPRRLALRAESVL
                     RVSSWMATSPMAEVAARWIMDGTAQRLVQVQRERLGTRQAMVREVLGRYLLGSHPQAL
                     SAWLKVPDYWQADRVTRELRNREIAVTSPDPFLVRGAERPNAVRLCVGAEVGDNTFKT
                     ALETIGEVFEQYPHVHDFS"
BASE COUNT          322 a          476 c          536 g          324 t
ORIGIN      
        1 gcgtccgcgc ggcactagtg gcgaaaaatg ctcgcaaacc cttggtttta ttcccgtctc
       61 gaggtcgcgc tacaccgcca tgaacgcagc atacaaagac atatttttgt tctgattgct
      121 ctaggacaat aatttttgcg gccgcttctg cgccactatg ggagctactg aatggaggcg
      181 aacgtgaacg agcggtggcg tgacgcggtg cgtacggtgc atggcgtcga gtcgaaatac
      241 aaacgtctgg tgaaagcgat cgcaacggat atcgaaagcg cggcgcttgc gtcaggcgca
      301 cgcctgccgc cgcagcgcga ggtcgcggcg gacctggcca tcagcgtgca gaccgtgacg
      361 aacgcgtaca aggagctgga gcggcaaggg ctgattcgtt gcgaggtggg gcgaggcagt
      421 tttgttgcgg cgcgcgtgac cgagaccatg tcgaaataca tgctcgacac agctgagcgc
      481 gaagtcatcg acttctctat tgcgcggatc gtgcataccc cggagcacga tgccatgtgg
      541 cgcaaggtgt gcgcgacgct tgccacggtc gaggatcaac catggatacg cgcgtttcgg
      601 ccgatcgccg gttttgagca tcaccggcag gccggtgccg cgtggctcgc cacgctcggc
      661 atgccggcga atcccgagac gctgctggtc accaacggag ccgcccatgg catcttcctt
      721 gcactggcat cattcgtcgg ccccggcgac acggtgctgt gcgagagcct gaccgaccat
      781 ggcgtgattg gctcggccaa tgtgctgggt ttcacgctga agggccttga gatcgacgaa
      841 tacggcatac gtccagaaca tttcgaagag atgtgcgaca gcgagcgcat cagcgcgctg
      901 gtctgcaccc cgacactgaa caaccccacg gtagccctga tgccggattc tcgtcgccgc
      961 gcgattgcac gcattgccga gcgttacggc gtgtatgtga tcgaggacga cgtttatggc
     1021 gcgttgccgg ccaagacgca gacgcctatt gccagtctga ttccagagct gtcgttttac
     1081 tgcacgagca tgacgaagtc ggtgctgacc ggcttgcgga tcggttatct caccatgccg
     1141 cgacgcctcg cgctgcgagc tgaaagcgtg ctgcgtgtga gcagctggat ggcgacatcg
     1201 cccatggccg aggtcgccgc gcgctggatc atggacggga ccgcgcaacg cctggtccag
     1261 gtacagcgcg agcgcctggg aaccaggcag gcaatggtgc gggaggtgct cggccgctat
     1321 cttctgggga gccatccgca agcgttgtcc gcctggttga aggtgcccga ttactggcaa
     1381 gctgaccgcg tcacgcgcga gttgcgcaac cgggagattg cggtgacatc gcccgatccg
     1441 ttcctcgtgc gtggcgccga gaggccgaat gcggtgcgtc tgtgcgtggg tgccgaagtg
     1501 ggcgataaca cctttaaaac cgcactcgaa accattggag aagtgttcga gcagtacccg
     1561 catgtgcacg acttcagttg actccggcaa ttgacccggc atcgacgtcc ggctctgttg
     1621 tatcgattga actaggacat taaaaagcgc tttttagg
//
LOCUS       DATGBK010000605         1528 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_76720, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000605 DATGBK010000000
VERSION     DATGBK010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76720"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..542)
                     /locus_tag="VKJ77_08620"
     CDS             complement(<1..542)
                     /locus_tag="VKJ77_08620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019936818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC45372.1"
                     /translation="MQREKTGLPRSIADNLARQIKDGLLQAGAKLPSIREYAEGNGCS
                     KNTVISAFDILTADGLIEPKRGSGFFVSRSVEVQPVGDEPTTLDRAMDVVWLMREQLQ
                     NKPEFLNLGEGFPPVEWLEETRLDQFHQRVVRTGVGSLFRYGSRFGYLPLRQHLQQKL
                     AGYEIEAAPTQIVLTHGANQA"
     gene            711..>1528
                     /locus_tag="VKJ77_08625"
     CDS             711..>1528
                     /locus_tag="VKJ77_08625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006479771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxy-3-methylglutaryl-CoA reductase"
                     /protein_id="HMC45373.1"
                     /translation="MNIDSKLPNFRGLSPAQRLKHIAQAANLSDADHALLGNPGALPL
                     ETANGMIENVIGTFQLPMAVAGYFQINGRDVLVPMAVEEPSIVAAASFMAKMAREAGG
                     FVTSSTGPLMRAQVQIIGVSDPYGARLSILKHKEELVQLANSRDKVLIGLGGGCKDIE
                     VHVFPETPRGAMVVAHLIVDVRDAMGANTVNTMAESVAGRIEEITGGKVRLRILSNLA
                     DLRLARAQVRYSADTLTTKEYSGEQVIEGVIDAYLFAAIDPYRAATHNKGIMNG"
BASE COUNT          297 a          453 c          464 g          314 t
ORIGIN      
        1 gcctgattgg cgccgtgcgt tagcacgatc tgcgtaggcg ccgcttctat ctcataccca
       61 gccagcttct gctgaagatg ctggcgcaat ggcagatacc cgaagcggct gccgtagcga
      121 aacagcgatc ccacgccggt acgaaccacg cgctgatgaa attgatccag acgggtttcc
      181 tccagccatt ccaccggcgg aaatccttct cccagattga gaaactcggg cttgttctgc
      241 agttgttccc gcatcaacca gacgacgtcc atcgcccgat ccagggtggt gggttcatcg
      301 ccgaccggtt gtacctcgac cgaacgtgac acgaaaaatc ccgaccctcg cttcggttcg
      361 atcaggccgt ccgccgtcag gatgtcgaac gcgctgatga cggtgttctt tgagcaaccg
      421 ttcccctcag cgtattccct aatcgatggc aatttggcgc cggcctgcag caggccgtct
      481 ttgatctgtc tggccaaatt gtccgcgatg gatcgaggca ggcccgtctt ttcgcgttgc
      541 atgatcctgg tcgctccggt tttaactgga ttgttctggg tacagtgact tcactgtctc
      601 gagaaagtgt gccttttaat ggggtacagc cggcctatta ttcgctcgat ctagacactt
      661 ccgcaagccg gacgcgcggc gcataaatga gaaagcaagg agcactgcac gtgaacatcg
      721 attcgaagct gccgaatttt cgcgggctct cgccggcgca acgcctgaag catattgccc
      781 aggctgcgaa tctgagcgac gccgatcatg cgttactcgg caaccccggc gcacttccgc
      841 tggagaccgc caacggcatg atcgagaacg tgatcgggac gttccagttg ccgatggccg
      901 tggccggcta cttccagatc aacggacgcg acgtgctcgt gcccatggcg gtagaggaac
      961 cgtcgatagt cgccgcggcc tcgttcatgg cgaagatggc gcgcgaggcc ggcggcttcg
     1021 tcacgtcgag caccgggccg ctgatgcgcg cgcaagtgca gatcatcggc gtgagcgatc
     1081 cctacggcgc gcgcttatcg atcctcaagc ataaggagga actggtccag ctcgcgaata
     1141 gccgcgacaa ggtgctgatc ggtctcggcg gcggctgcaa ggacatcgag gttcacgtgt
     1201 ttcccgagac gccgcgcggc gcgatggtgg tcgcgcacct gatcgtcgac gtgcgggatg
     1261 ccatgggcgc gaacaccgtc aatacgatgg cggagtcggt ggcgggtcgt atcgaggaga
     1321 tcacgggcgg taaagttcgc ctgcggattt tgtcgaatct cgcggatctg cgtcttgccc
     1381 gcgcgcaagt tcgttactcc gccgatacgc tgacgaccaa ggagtattcg ggtgagcaag
     1441 ttatcgaagg cgtgatcgat gcgtatctgt tcgcggccat cgatccgtac cgcgccgcga
     1501 cgcataacaa agggatcatg aacggcat
//
LOCUS       DATGBK010000606         2355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_31031, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000606 DATGBK010000000
VERSION     DATGBK010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31031"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..675)
                     /locus_tag="VKJ77_08630"
     CDS             complement(<1..675)
                     /locus_tag="VKJ77_08630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004555383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HMC45374.1"
                     /translation="MTTIDTVDIRQVDLQPKVKRTDAIQSFVVQETVLVTIRCGDGSV
                     GTGYTYTIGTGGSSIVALLHDHLAPLLIGRDPAEYEAIWRDLFFHTHATAVGAITSLA
                     LAAIDTALWDRNTRVANLPLWVAAGGSKPRTRTYSTEGGWLHLSEAELVDQTLQARDA
                     GFHGAKIKVGRPHLAEDTRRLTAVRNAMGDDFEIMVDANQGFTLSEAIRRAHAFEPLR
                     LAWLEEP"
     gene            complement(711..1571)
                     /locus_tag="VKJ77_08635"
     CDS             complement(711..1571)
                     /locus_tag="VKJ77_08635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HMC45375.1"
                     /translation="MSDMAFKGAFVRKSAVWFGVFIVMAIICLPGLWVVLNAFRSNVA
                     ILSNQSPLVGSSYTLDNFKSMFGYGQMASLPISQYFVNSLIISCVSTIAALAVGVLGG
                     YAFARFEFRHKQVMFVALMLTRAIPGIALSLPIFMLWAWTGLLDTRIGVILVYLAMNV
                     PFTVWLIDGFFREVPIELSQAAQIDGCNRWQAFWRIELPLAKSGIASAGIFAFLTSWN
                     EFALATQLCRSPDTKTLPVGLMDFTAQFSVDWAGMCAMAVIIIIPAIVLTFIVQKHLI
                     AGLTLGGVKG"
     gene            complement(1576..>2355)
                     /locus_tag="VKJ77_08640"
     CDS             complement(1576..>2355)
                     /locus_tag="VKJ77_08640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HMC45376.1"
                     /translation="YRLTDPDTLSHWIGWRNYERAFANGDFWAAFGRTILFLTIALNL
                     ELLLGLGVALLLNQVTRGQRALRTVMMFPMMFSPVLVGFQFKFMLNDSTGIVNNLMQT
                     LFGAKSAFPFLVNANSALASLIGAEVWNSTPIFAVILMAGLMALPKDPIEASKVDGCT
                     SWQTFRYVTLPYLMPFIYISMTIRSLDVGRAYDIVRIMTNGGPGGRTELLWTMVGRIA
                     YDDSRMGYANAIAYVSVLVSILFTLYFFRKLSGARKHMGPA"
BASE COUNT          546 a          721 c          663 g          425 t
ORIGIN      
        1 cggctcttcc agccaagcaa gtcgcaacgg ttcaaacgcg tgcgcgcggc ggatggcttc
       61 ggacaacgtg aagccctggt tagcgtcgac catgatctcg aagtcgtcgc ccatcgcgtt
      121 gcgtacagcg gtaagccgtc gcgtgtcttc agccagatgc ggccggccga ccttgatctt
      181 cgcgccgtga aaaccggcat cgcgcgcctg caaggtttga tcgacgagct ccgcctccga
      241 caaatgcaac cacccgcctt cggtggaata cgtgcgcgtg cgtggcttcg atccgcccgc
      301 cgcgacccac aacggcaggt tcgccacgcg cgtgttgcgg tcccataggg cggtatcgat
      361 tgcagcaagc gcaaggctcg taatcgcgcc aacggccgtc gcatgcgtat ggaaaaagag
      421 gtcgcgccag atggcttcgt attcggcggg atcgcgtcca atcagcaacg gcgcaagatg
      481 atcgtgcagc aacgcgacga tggacgaacc gcccgtgccg atggtgtacg tataacccgt
      541 gcctacgctg ccgtcgccgc aacgaatcgt taccagcacg gtctcctgga ccacgaacga
      601 ctggatcgca tccgtgcgtt tgaccttggg ttgaaggtcg acctggcgga tgtcgacggt
      661 atcgatagtt gtcatttttt tgttccctct aaagctagtt cagccggtgt tcagcctttc
      721 acgccgccga gcgtcaggcc cgcgatcaga tgtttctgca cgatgaacgt cagcacgatc
      781 gccggaatga tgatgatcac ggccatcgcg cacatgcccg cccagtcgac cgaaaactgc
      841 gcggtgaagt ccatcaaccc gacgggcagc gtcttggtat cggggcttcg gcacaattgc
      901 gtggcgagag cgaattcgtt ccagctcgtg agaaacgcaa agatccccgc cgatgcaatc
      961 ccgctttttg ccagcggcaa ctcgatgcgc cagaacgcct gccagcggtt acatccatcg
     1021 atctgcgcgg cttgtgacaa ctcgatcggc acctcgcgaa agaagccgtc gatgagccat
     1081 acggtgaacg gtacgttcat cgcgagataa acgaggatca cgccaatgcg cgtatcgaga
     1141 agacccgtcc atgcccacag catgaaaata ggcaacgaca acgcaatacc cggaatcgca
     1201 cgcgtgagca tcagcgcgac gaacatgacc tgcttgtgcc tgaactcgaa acgcgcgaac
     1261 gcataaccgc caagcacgcc gaccgccagc gcggcgatcg tgcttacgca ggagatgatc
     1321 aacgaattca cgaagtactg gctgatgggc agcgacgcca tttgcccgta gccaaacatg
     1381 ctcttgaagt tatcgagcgt gtagcttgaa ccgaccagcg gcgattgatt cgacaagatc
     1441 gccacgttcg aacggaacgc gttgagcacg acccaaagcc ccggcaagca gatgatcgcc
     1501 atcacgatga acacgccgaa ccacaccgcc gacttgcgca cgaatgcgcc cttgaatgcc
     1561 atatcgctca tgatgtcagg caggtcccat gtgtttgcgc gcgccgctta acttgcgaaa
     1621 gaagtacagc gtgaagagga tggacaccag caccgacaca tacgcaatcg cattggcata
     1681 acccatgcgc gaatcgtcgt aagcaatgcg tccgaccatc gtccagagca attccgtgcg
     1741 cccacccgga ccgccgttcg tcatgatgcg tacgatgtcg taggctcggc ccacatcgag
     1801 tgaacggatc gtcatggaga tatagataaa cggcatcagg tacggcagcg tcacgtaacg
     1861 aaatgtctgc catgaggtgc agccatccac cttcgatgct tctatcggat ctttcggcaa
     1921 cgccatcaaa cccgccatca ggatcaccgc gaagatgggc gtcgagttcc atacctcggc
     1981 cccgatcagc gacgccagcg cggagttggc attgacgaga aacgggaacg ccgacttcgc
     2041 gccgaacaac gtctgcatca ggttgttcac aatgcccgtg ctgtcgttga gcatgaactt
     2101 gaactggaag ccgacgagca cgggcgagaa catcatcggg aacatcatca ccgtgcgtaa
     2161 tgcgcgctgg cctctcgtta cctgattgag cagcagcgcc acgccaagac ccagcagcag
     2221 ttccagattc aacgcaatag tgaggaacaa aatcgtccgg ccgaacgcgg cccagaagtc
     2281 gccattcgca aacgcgcgtt catagttacg ccagccgatc cagtgcgaaa gcgtatcggg
     2341 gtcggtcagg cggta
//
LOCUS       DATGBK010000607         2482 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285311, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000607 DATGBK010000000
VERSION     DATGBK010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285311"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1215
                     /locus_tag="VKJ77_08645"
     CDS             112..1215
                     /locus_tag="VKJ77_08645"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013341185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     exonuclease"
                     /protein_id="HMC45377.1"
                     /translation="MDTSQDLIVARPEGLYCPPGDFYIDPWRPVDRAIITHAHADHAR
                     FGHASYLAAEASVGVLLSRLPGISLQGVPYGERLVVNGVSVSLHPAGHVLGSAQVRVE
                     HAGRVWVASGDYKVEPDPTCAPFEPVRCDTFITESTFGLPIYRWEPSRAVFDGIDSWW
                     RHNAAEGRASVLFCYSFGKAQRILAGVDPAIGPIFCHGAVEPLNRAYAQAGVHLPSTR
                     PVSDIAAKDKAAFKGALIIAPPSAQGSAWMRRFGDYSDAFASGWMRLRGTRRRRGLDR
                     GFVLSDHADWPGLQTAIGATGAQRVIVTHGQIEPMVRWLREQGLEAGAFTTEYGDDAI
                     EADAAESGHVNPSAQQAIESPPESPPSPEADSR"
     gene            1212..>2482
                     /locus_tag="VKJ77_08650"
     CDS             1212..>2482
                     /locus_tag="VKJ77_08650"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cisplatin damage response ATP-dependent DNA
                     ligase"
                     /protein_id="HMC45378.1"
                     /translation="MKRFAALYTALDGTTSTKEKLEALIAYFSAAEPEDAAWASYFLS
                     GGKPRQSVPTRLLTEFARERAGLPEWLFDESYQAVGDLAETIAHILPPAQRTSELGLA
                     QWIEERVLTLRGLEPGELRTRLLGYWDELDWSERFLLTKLIGGGFRVGVARQLVVRAL
                     AEVAGVDHKRIAQRMVGWTDSQQAPGAARYLRLIAPENTDDENAATPHESDLGLPYPF
                     FLAHPLQADPAMLGAPSEWVIEWKWDGIRAQLVKRGGRVWLWSRGEDLITDRFPELAS
                     LGAALPDGTVIDGEILAWEPGGDAPLPFARLQPRITRKTLSKKVLADSPATFLAYDLL
                     EADGRDLRVTPLIERRARLDALATALGATLAVDLLRVSPMVEAPDWETLAALRDESRG
                     RGVEGLMLKGRESLYGVGRTKASGTWWKWKI"
BASE COUNT          428 a          779 c          800 g          475 t
ORIGIN      
        1 gcggcatgcc gtttgctgcg atccaatgcg gcatcgcaag ctgttgccat ctttgaacca
       61 gtttgccgcc actttcagct gtcgttatct ttaaccgcga gtggggaacg gttggacaca
      121 tcgcaagacc tgatcgtcgc caggccggag ggcctttatt gcccgccggg ggatttttat
      181 atcgacccgt ggcgccccgt tgatcgggca atcatcactc acgcccatgc cgatcacgcc
      241 cgcttcgggc acgcaagtta tctcgcggct gaggcgagtg tcggtgtgtt gctctcgcgg
      301 ttgccgggta tctcccttca aggtgtcccc tacggcgagc gcctggtcgt caacggcgtc
      361 tcggtctcac tgcatccggc cggccacgtg ctcggctccg cgcaagtgcg ggtggaacat
      421 gcgggccggg tctgggtcgc ctcgggcgac tacaaggtcg agcccgatcc cacttgtgca
      481 ccgttcgaac cggttcgctg cgacacgttc atcacggaat ccacgttcgg cctgccgatt
      541 tatcgatggg aaccatctcg cgcggtcttc gacggcatcg attcctggtg gcggcataat
      601 gcggccgaag gccgggcttc cgtgctgttc tgctattcgt tcggcaaggc gcagcgaatt
      661 cttgcaggcg tcgatccggc cataggaccg atcttttgcc atggcgccgt ggaaccgctg
      721 aatcgggcgt acgcgcaagc gggtgtgcat ttgccatcga cgcggccagt cagcgatatt
      781 gccgcgaaag acaaggctgc gttcaagggc gcactgatca tcgcgccgcc gtccgcgcaa
      841 ggcagcgcgt ggatgcgtcg ctttggcgac tatagcgatg cgtttgcgtc gggctggatg
      901 cggcttcgcg gcacgcggcg acgacgcggc ctggatcgcg gcttcgtgct gtccgatcat
      961 gccgactggc ccggtttgca aacagcaatt ggtgcaacgg gcgcgcaacg cgtgatcgtc
     1021 acgcacgggc aaatcgagcc gatggtgcgc tggttgcgcg aacaaggtct ggaagcgggc
     1081 gcgttcacca ccgaatacgg cgatgacgca atagaagccg acgcggcgga aagcggccac
     1141 gtaaacccgt ccgcgcagca agccatcgaa tcccctcctg aatcccctcc ttcgcccgag
     1201 gccgactcgc gatgaaacgc ttcgccgcgc tgtacaccgc tctggacggc actacgtcga
     1261 cgaaagaaaa actcgaggcg ctgatcgcgt atttctcggc ggccgaaccc gaggacgccg
     1321 cgtgggcgtc gtactttctc agcggcggca aacctcgcca atcggtgccc actcgcctac
     1381 tcaccgagtt cgcccgcgag cgcgccggct tgccggaatg gctcttcgac gagtcgtatc
     1441 aagcggtcgg cgatctggcc gaaaccatcg cgcatatcct gccgcccgcg cagcgcactt
     1501 ccgaactcgg cctcgcgcaa tggatcgagg aacgcgtgct gaccttgcgc ggtttggagc
     1561 cgggcgagct tcgaacccgt ttgctcggct actgggacga actcgactgg agcgaacgtt
     1621 tcttgttgac caagctgata ggcggcgggt ttcgggtggg ggtcgctcgc caactcgtcg
     1681 tgcgcgccct cgccgaagtc gcaggtgtgg atcacaaacg cattgcccag cgtatggtcg
     1741 gctggaccga ttcgcagcaa gcgccgggcg cggcgcgtta tctgcggctg atcgcaccgg
     1801 aaaacacgga cgatgaaaac gccgccacgc cgcatgagag cgatctcgga ttgccgtacc
     1861 catttttcct cgctcatccc ttgcaagccg atccggcgat gctcggcgcg ccgtcggagt
     1921 gggtgatcga atggaagtgg gacgggattc gcgcgcaact tgtaaaacgc ggcggccggg
     1981 tatggctctg gtcgcgtggt gaagatctca tcaccgaccg ctttcccgaa ctcgcctcgc
     2041 tcggcgccgc gctgcccgac ggcaccgtca tagacggcga aattctcgca tgggaacccg
     2101 gtggcgacgc gccattgccg tttgcgcgac tgcaaccgcg aatcacgcgc aagacgttat
     2161 cgaagaaagt gcttgccgat tcgcccgcca cgtttctcgc ctacgacctg ctggaagccg
     2221 atggccgcga tctgcgcgtc acgcctctga tcgaacggcg cgcgcgactt gatgcattgg
     2281 ccaccgcgtt gggcgcgaca ctggcggtcg acctgctgcg ggtgtcgccg atggttgaag
     2341 cgcccgattg ggagaccctc gccgcgttgc gcgacgaaag ccgcggtcga ggtgttgaag
     2401 gcttgatgct gaagggacgc gaatcgcttt atggcgtcgg gcgcacgaag gcttccggga
     2461 catggtggaa atggaagatc ga
//
LOCUS       DATGBK010000608         1729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_76789, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000608 DATGBK010000000
VERSION     DATGBK010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76789"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..1303)
                     /locus_tag="VKJ77_08655"
                     /pseudo
     CDS             complement(1..1303)
                     /locus_tag="VKJ77_08655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776385.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            complement(1300..>1729)
                     /locus_tag="VKJ77_08660"
     CDS             complement(1300..>1729)
                     /locus_tag="VKJ77_08660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HMC45379.1"
                     /translation="GLTDVPIIAVTASPSGSDEKKSLAAGVNAFLPKPVDFGLLLAQI
                     RALLNLEWTYAARAHSPHSPQSSSPEVPATVPAPQMDELHRLARIGNMRDIIAWADQM
                     SLIDPQYEPFTTHLRGLAKGYQSKAILLLVERYLEARPAP"
BASE COUNT          319 a          568 c          514 g          328 t
ORIGIN      
        1 gaccccaacg ccgggcatcg cctcggcctg aaactggacg atccgctcca cgccgtcggc
       61 tccccttacg cggcaatcga ggccgtaggg ccgccgttca tccagcagtg cccgtacagc
      121 gaggcgtacc atcccccggt cctcgcgatg caccgccgca agaaaagtgc gatagcacgg
      181 ccgcgaaaga tgcggcgcca agccgaggat ccgatacatc tcgtctgacc aatgaatcac
      241 gccggccgtt gtgtcccact cccagtcccc gagccgcgca agccgttgcg cgttcgcgag
      301 acttgcttcg ctcgcccgca atttcccctc ggccagcttg cgcgccgtca cgtcattgag
      361 gccgacgtag atggccggcg cgtcgtcgaa gcttgccacc cgggcggtga gcattgccca
      421 gaacgtgctg ccgtcgggtc gcctgaaatt gacttcagtg ttgcgaaagc cgccgagcat
      481 gcgaagctgg caccagcctg tctcgagtcg cggggtccac atagaagtcg gcaatacgaa
      541 tgaccgtgtc ggcctgggcg atgaggccga acagtttccg aaacggctcg ttcatgtaga
      601 gcagcgtccc gtgcggcatc gacgtgatgc aaaacggtag cggactggtc tccacaatgg
      661 tgcgaaaccg cgcctcgctc gacagcaact tcgtttcagc ccgtctgcgc tcctctatct
      721 ccaggcgcag gcttgcattc gcctgcgcga gttcagcggt gcgttgcgcg acccgcacct
      781 cgagttcgtc gcgcgcacgc gccagcgccg cttccgcttg ctgacgcacg ctcacttcgt
      841 tcgacaattg ccggttctgt gcgacgagct gcttgtgcat ggcgcgtagc gccagatgcg
      901 tactgatccg cgccatcatt tcgtcgatcc gaacgggctt cgtcacgtag tccgcgccgc
      961 cagcggcgaa accttcgacc agatcctcga tgccggtcag cgacgtcatg aagatcaccg
     1021 agatatcccg cgtgcgctcg ttcatcttga gccggcggca cgtttcaaag ccgtcgatgc
     1081 cgggcatctt cacatcgagc aggatcagat ccggctgcga aaactgcgcg cgttcgagcg
     1141 cctcctcgcc atcgagcgcc accagcacgc gaaagccctg gtcggcgaga ctgtcaacca
     1201 cgaggccgag attggcaggc atgtcatcga ctatcaggat tgccggcggc tcgttgatgt
     1261 tgccgctgtc gctgtcgctc aggtgggcgc ttatctcgct catggcgccg gcctcgcttc
     1321 aagatagcgt tctacgagca ggaggatcgc cttcgactga tagcctttcg cgagtccacg
     1381 cagatgcgtt gtaaatggtt cgtactgcgg atcgattaac gacatctggt ctgcccatgc
     1441 aatgatgtcc cgcatattac caatgcgcgc aagacgatgc agttcatcca tttgcggtgc
     1501 cggcacggta gccggcacct cgggcgatga cgactgcggg gaatgcgggg aatgcgccct
     1561 cgcggcatag gtccactcaa ggttcagcaa cgcacggatc tgggccagca acaggccgaa
     1621 gtcgaccggc ttggggagaa aggcattcac gcccgccgcg aggctttttt tctcatcact
     1681 accggaaggg ctggcagtca ccgcaatgat cggcacgtca gtcagcccc
//
LOCUS       DATGBK010000609         2927 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_100045, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000609 DATGBK010000000
VERSION     DATGBK010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2927
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100045"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..109)
                     /locus_tag="VKJ77_08665"
     CDS             complement(<1..109)
                     /locus_tag="VKJ77_08665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GPR1/FUN34/YaaH family transporter"
                     /protein_id="HMC45380.1"
                     /translation="MNFKTPNPASLGLAGFALTTWLLSMINAGWFTGDSM"
     gene            complement(199..2097)
                     /gene="acs"
                     /locus_tag="VKJ77_08670"
     CDS             complement(199..2097)
                     /gene="acs"
                     /locus_tag="VKJ77_08670"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HMC45381.1"
                     /translation="MDAYHALVAEAAQDHEAFWARLAREHLSWRSPFTQILNDRDAPF
                     YKWFEDGELNASYNCLDRNLASGNANKTAIIFESDDGRVSTVTYQALYHRVCRLANAL
                     RARGVKKGDRVVIYLPMSVEGIVAMQACARIGAPHCVVFGGFSAKSLHERITNVGAVA
                     IITADEQVRAGKTLPLKSIVDEALAMGGTDAVKTVVIYRRTGGRIPWIGGRDAWLHEL
                     EHAQADTCEPEWVSAEHPLFVLYTSGSTGAPKGVQHSTGGYLLWAAVTMKWTFDIKPD
                     DVFWCTADIGWITGHTYICYGPTAVGATQVIFEGVPTFPNAGRFWDMIERHKVTIFYT
                     APTAIRSLIKSAEADRAVHPASYDLSTLRILGTVGEPINPSAWNWYSEHVGGGRCPVL
                     DTFWQTETGGHMITPLPGVTPLVAGSCTLPLPGIDAAIVDETGNEVPNGQGGVLVIRK
                     PWPSMIRTVWGNPERFRKGYYPDELGGTLYLAGDGAIRDPDTGYFTITGRVDDVLNVS
                     GHRMGTMEIESALAACPLVAEAAVVGRPDETFGEAIVAFVVLKGPRPTGTDVKRIADE
                     LRAWVGKEIGPIAKPKEIRFGDAMPKTRSGKVVRRMLRSVAKGEAIAQDTSTVENPQV
                     IAQFADPA"
     gene            complement(2389..>2927)
                     /locus_tag="VKJ77_08675"
     CDS             complement(2389..>2927)
                     /locus_tag="VKJ77_08675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012218213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="YoaK family protein"
                     /protein_id="HMC45382.1"
                     /translation="SSLAAFTTGAATSAIMINWGRRRRAQSEYALPLMLEAVLLLCFG
                     LLGSNLENNRFLFVPATVGLLCYVMGLQNAIITKISKAEIRTTHMTGIVTDIGIELGK
                     LFYWNVSESGPGVAAVRADRSRLRLLASLLGMFFIGGLAGALGFKYVGFISTLPLSAM
                     LVVLAVVPLMDDLVGQRR"
BASE COUNT          584 a          897 c          888 g          558 t
ORIGIN      
        1 ccattgaatc gcctgtgaac cagccggcgt tgatcatgct gagcagccag gttgtcagag
       61 caaatccggc gagcccgagc gacgcggggt tgggtgtctt gaagttcatg atgaggtctc
      121 ctgagggaaa caaaatctgt cgcgcagccg tctggacgag tcagcggctg cgctaggtat
      181 ccgatggtga agtgcccgtc aagccgggtc ggcaaactgc gcgatcacct gcggattttc
      241 aacggtcgat gtatcttgcg cgattgcctc acccttcgcg accgagcgca gcatacggcg
      301 cacgaccttg ccggaacgcg ttttcggcat cgcatcgccg aagcggattt ccttcggttt
      361 tgcaatcgga ccgatctcct tgccgaccca tgcacgcaat tcgtcggcta tgcgcttcac
      421 gtcggtaccg gtaggacgcg ggcctttcag cacgacgaat gcaacgatgg cttccccgaa
      481 ggtttcatcg gggcgaccaa cgaccgccgc ttcggcgacc agcgggcatg ctgccagggc
      541 cgactcgatt tccatcgtgc ccatgcggtg gcccgataca ttgagcacgt cgtcaacgcg
      601 gccggtgatc gtgaaataac cggtgtcggg gtcacgaatc gcaccatctc cggcgagata
      661 cagggtgcct cccagttcgt cagggtaata gcccttgcga aagcgctccg ggttgcccca
      721 gacggtgcgg atcatcgacg gccagggctt tctgatgacc agcactccgc cttgcccgtt
      781 cgggacctcg ttgccggttt catcgacgat cgcggcatct atgccgggca acggcagcgt
      841 gcaggagccc gcaacaagcg gggtgacgcc cggcaacggc gtgatcatgt gaccgcctgt
      901 ttcggtctgc cagaacgtgt cgagcaccgg gcaccgacca ccgccaacat gctccgaata
      961 ccaattccac gcgctcgggt tgatgggttc accgaccgtg ccgaggatgc gcagcgtgct
     1021 caggtcgtaa cttgccggat gcaccgcgcg gtccgcttca gcactcttga tgagagaccg
     1081 gatggcagtc ggcgcggtgt agaaaatcgt caccttgtgg cgctcgatca tgtcccagaa
     1141 gcggccagcg ttcgggaacg tggggacgcc ttcaaaaatg acctgggtcg cgccaacggc
     1201 ggtcggcccg tagcaaatgt acgtatgccc cgtgatccag ccgatgtcgg cggtacacca
     1261 gaagacatcg tcaggcttga tatcgaaggt ccacttcatg gtgaccgcgg cccacagcag
     1321 gtagcctccc gtgctgtgct gcacaccctt cggcgcaccg gtggaccctg aggtatacaa
     1381 cacgaacagc ggatgctcgg cgctcaccca ttcgggctcg caagtgtcag cctgcgcgtg
     1441 ctccagctca tgcaaccatg cgtcgcggcc gccgatccat ggaatccggc cacccgtgcg
     1501 ccgatagatg acgacggtct tcacagcgtc ggttccgccc attgcaagcg cctcgtcgac
     1561 aatgcttttt agcggcagtg tcttgccggc gcgaacctgc tcgtccgcgg taatgattgc
     1621 taccgcgcca acattcgtta tgcgctcatg cagcgacttc gcggaaaaac caccgaacac
     1681 gacgcaatgc ggtgcgccga tgcgcgcgca ggcctgcatc gcgacaatac cttcgactga
     1741 catcggcaga tagatgacta cgcggtcgcc tttcttcacg ccgcgtgccc gaagtgcatt
     1801 cgcgagccgg catacccggt gatacaacgc ctgatacgtg acggtcgaga ctcggccgtc
     1861 gtcggactcg aagatgatcg ccgttttgtt cgcattgccg ctggccagat tgcggtcgag
     1921 gcagttgtac gacgcattca gttcgccgtc ttcgaaccac ttgtagaacg gcgcgtcccg
     1981 gtcgttgaga atctgcgtga acggactgcg ccagctcaga tgctcgcgcg caagacgtgc
     2041 ccagaaagct tcgtgatcct gcgcggcctc ggccacgagc gcgtggtaag cgtccatgct
     2101 ttcaatcgcg gtgcggcctg ccggagcaat gccctgggca gggacgagag gggtcgattc
     2161 gatggtagac atggtctcct cgctttaatc gtggatcttg aaatcggcga gccaacaggg
     2221 ggcgtcgctt ggggaagggt tttcgataga gggctcttga tggcccgatg acgcaacagg
     2281 aagtgaaccg gcggcgcttg ccgaataagc gcagcgctta tcccactatg agatatccgg
     2341 tggatatctc attgatacaa gtcaagcggg caggtcagtg ccgtggtttc acctacgctg
     2401 cccgaccaga tcgtccatca gcggcacgac tgccagtaca accaacatgg ctgataaagg
     2461 cagggtcgat atgaaaccca cgtacttgaa acccagcgca cccgcgaggc cgccaataaa
     2521 aaacatgccg agcagtgacg ccaggagccg gagcctcgat cggtctgccc tgacagcggc
     2581 aacgccgggc ccggactcgg acacgttcca ataaaaaagc ttgccgagtt caatgccgat
     2641 atccgtgacg atgccggtca tgtgcgtggt gcggatctcg gctttggaga tcttcgtgat
     2701 gatcgcgttc tgcagaccca tcacgtagca cagcaaccct accgtcgcgg gcacgaacaa
     2761 gaaccggttg ttctccaggt tcgaaccgag caggccaaag cagagcagca gcacggcttc
     2821 cagcatcaac ggcagcgcgt attcgctttg tgcccgccgg cgccggcccc agttgatcat
     2881 gatcgcggag gtggcagcgc cggtcgtgaa tgcggcgagt gaactca
//
LOCUS       DATGBK010000610         2053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_238872, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000610 DATGBK010000000
VERSION     DATGBK010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238872"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /locus_tag="VKJ77_08680"
     CDS             complement(<1..466)
                     /locus_tag="VKJ77_08680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017523843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45383.1"
                     /translation="MNTVTQDKSMLKVSGLNAFYGRAQILYDVELEVGRGEVVALMGR
                     NGAGKSTTMKALMGMLPSRQGAINFCGHDIAKLPPYRIARLGMGFVPEDRRVFGDLTV
                     MENLDTGRQPPREDAPRWTPEKLFRLFPNLGEMPNRPGSQMSGGEQQMLTVSR"
     gene            complement(466..1251)
                     /locus_tag="VKJ77_08685"
     CDS             complement(466..1251)
                     /locus_tag="VKJ77_08685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45384.1"
                     /translation="MTLLRVSHLARSFGGVKAVDDVSFDLHAGQLLALIGPNGAGKST
                     CFNMLNGQLRPSSGSILFDDHEIAGKRPRDIWRLGVGRTFQIAATFNSMTVIENVQMA
                     LVSRDRQLFNLWKPTSSIHADEAIALLEQVGMAAHAKRACGVLAYGDVKRVELAIALA
                     NKPKLLLMDEPTAGMAPKERNDLMALTKQLVIDHKLGVLFTEHSMDVVFAYADKLIVL
                     ARGKLIGEGDAETVRNDPRVREVYFGTGKSFTPRASLAADGVA"
     gene            complement(1248..>2053)
                     /locus_tag="VKJ77_08690"
     CDS             complement(1248..>2053)
                     /locus_tag="VKJ77_08690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC45385.1"
                     /translation="SFGHAAYFGLGAYGAALFLKVLNLPMEAALVLGPLLAGIGALVF
                     GWFCVRLSGVYLAMLTLAFAQIVWSIVFQWDAVTGGSNGILNLWPSTWLSSTVAYYYV
                     TLVFAVLGVWLLRRMLFSPLGYAMRASRDSTLRAEAIGIDVKRVQWVAFIIASLFCGL
                     AGSLYAFSKGSISPEVISVGRSVDGLVMVLLGGLQTLTGPIVGAAVFTWLQDTVARQT
                     DYWEALLGAAILVLVIAFPQGIVGFVRDKLGSQKNSDSSVTSQSAKEAL"
BASE COUNT          446 a          669 c          579 g          359 t
ORIGIN      
        1 tacgcgacac ggtcagcatt tgctgctcgc cgccgctcat ctggctaccc gggcgattcg
       61 gcatctcacc aagattcggg aacaaccgga acagcttttc cggcgtccag cgaggtgcgt
      121 cttcgcgcgg cggttggcgg ccggtatcga gattctccat gaccgtgaga tcgccgaaca
      181 cgcgccggtc ttccggcacg aagcccatgc cgagccgcgc aatacgatac ggcggcaact
      241 tcgcgatgtc atgcccgcag aaattgatcg caccctgtcg cgaaggcagc atgcccatca
      301 gcgctttcat cgtggtcgac ttgcccgcgc cgttgcggcc catcagcgcg accacttcgc
      361 cgcggccaac ttcgagttca acgtcgtaca ggatctgcgc gcggccatag aacgcgttca
      421 ggccggaaac tttcaacatg ctcttgtctt gagtgaccgt gttcattacg cgactccgtc
      481 tgcagcaagc gatgcacgcg gtgtgaaaga tttccccgtg ccgaaataca cttcgcgcac
      541 gcgcggatca ttgcggacgg tctccgcatc cccctcgcca atcagcttgc cacgagcgag
      601 cacgatcagc ttgtcggcat aagcgaacac cacatccatg ctgtgctcgg tgaagagcac
      661 gccgagcttg tggtcgatca ccagttgctt ggtcagcgcc atcaggtcgt tgcgttcctt
      721 gggcgccatg cccgccgtcg gttcgtccat cagcagaagc ttcggtttgt tggcaagtgc
      781 gatggccagt tcgacacgct tcacatcgcc ataagccagc acgccgcatg cgcgcttcgc
      841 atgcgccgcc atgccgacct gttcgagcag cgctatcgct tcatcggcgt gaatggatga
      901 ggtcggtttc cacaggttga atagctggcg gtcccgcgaa acgagcgcca tctgcacgtt
      961 ttcaatcact gtcattgaat tgaaggtcgc ggcaatctgg aaggtgcggc caacgccgag
     1021 acgccagata tcgcgcggac gtttgccggc gatctcgtgg tcgtcgaaca ggatcgagcc
     1081 tgaactcggt ctcaactgcc cgttgagcat gttgaagcag gtcgacttgc ccgcaccgtt
     1141 cggtccaatc agcgcaagca actgccccgc gtgcaagtcg aaggaaacgt cgtcgaccgc
     1201 tttgacgccg ccgaacgacc gtgcaagatg agagacgcgc agaagagtca cagggcctcc
     1261 ttggcggatt gcgaggtcac gctgctatcg gaattctttt gcgacccaag cttgtcccgc
     1321 acaaacccca cgatcccctg cggaaacgca atcaccagca ccaggatcgc agcgcccagc
     1381 agcgcttccc aatagtccgt ctgacgcgcg accgtatctt gaagccaggt gaacactgcc
     1441 gcgccgacaa tcggcccggt gagcgtctgc aagccaccca gcagcaccat gacgagaccg
     1501 tcgaccgagc gcccgacact gatcacttcc ggcgagatcg accccttgga gaacgcatac
     1561 agcgatcccg cgagtccaca gaacaatgac gcgatgatga aagcgaccca ctgcacgcgc
     1621 ttcacatcga taccgattgc ttcggcgcga agggttgaat cgcgcgaggc gcgcatggca
     1681 taaccgagtg gcgagaacaa cattcgccgc aagagccaca cacccagcac cgcgaatacc
     1741 agggtcacgt aatagtacgc caccgtcgaa ctaagccagg tcgacggcca caggttgaga
     1801 ataccgttgc tgccgccggt caccgcgtcc cactggaata cgatcgacca gacgatctgc
     1861 gcgaaggcca gcgtcagcat cgcgagatag acgcccgata agcgcacgca gaaccatccg
     1921 aacaccagtg ccccgatacc ggcaagcagc ggaccaagca cgagcgcggc ttccatcggc
     1981 aagttgagga ccttcaggaa caacgctgca ccgtaggcgc cgaggccgaa atatgcggca
     2041 tgcccgaacg aat
//
LOCUS       DATGBK010000611         1959 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_31152, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000611 DATGBK010000000
VERSION     DATGBK010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31152"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1829
                     /locus_tag="VKJ77_08695"
     CDS             <1..1829
                     /locus_tag="VKJ77_08695"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HMC45386.1"
                     /translation="HAENLPRVTEFSASVGQNLALYEKYKAIAASEEHASLSVEQKKM
                     LSNELRGFRLSGAELPEDKKPRFARVQEEQAALSKAFSDHVLDATNAFSYVVTKESEL
                     AGLPEDVIEAAREAAQKESREGWKFTLHFPSYFPVMQYAEHRPLREAMYRAYVTRASE
                     LGANYGNGKADWDNTANVVEQLKLRAEEAHALGYQNFAEVSLAPKMAESPAQVVAFLE
                     DLAVRARPHGERDWMELRAFAATELGMPELQPWDSTFAAERLRQQRYSFSENEVKQYF
                     PQEAVLKGLFKVTETLFGVSIRRDEAAVWNPEVRFFRVENKDGSLVAQFYLDLYAREG
                     KRGGAWMDDARSRHKRREGGVQTPVAYLTCNFSAPVGGKPACFTHDEVITLFHEFGHG
                     LHHMLTRVDELGVSGINGVEWEAVELPSQFMENFCWEWDVLTDMSGHVDTGATLPREL
                     FDKMLAAKNFQSGLGTLRQIVLSMFDIQLHSDYDPAGATNVNDFAREINERFHVVPQA
                     PFSRWTNTFTHIFSGGYAAGYYSYKWAEVLSADAYAAFEEAAKLGGGSVLDATTGIRY
                     RREILEVGGSRPAMDSFKAFRGREPNIDALLRHNGMSPEAAH"
BASE COUNT          403 a          545 c          622 g          389 t
ORIGIN      
        1 cccacgccga gaatttgccg cgcgtaacgg agttctcagc gagcgttggc caaaatctgg
       61 cgctctacga gaaatacaag gcgattgcgg cgagcgaaga acacgcgtcg ctttctgtcg
      121 agcagaagaa aatgctcagc aacgagttgc gcggtttccg tttgtcgggc gccgaattgc
      181 ccgaagataa aaaaccccgt tttgcgcgcg ttcaggaaga acaggcggcg ttatcgaagg
      241 ccttctccga tcacgtcctc gatgccacca acgcgttttc gtatgtcgtg accaaggaaa
      301 gcgaactcgc aggtttgccg gaagacgtga tcgaagcggc gcgcgaagcg gcgcagaaag
      361 aaagccgcga gggctggaag ttcacgcttc atttcccgtc gtatttccct gtgatgcagt
      421 acgccgaaca tcggccattg cgtgaagcga tgtaccgcgc ctatgtaacg cgcgcgtccg
      481 aactgggtgc gaattacggc aacggcaagg ctgactggga caatacggcg aatgttgtcg
      541 agcagttgaa gctgcgtgcc gaagaagccc acgcgctcgg ctatcagaac ttcgctgagg
      601 tgtctcttgc gccgaagatg gcggaatcgc cggcacaggt ggtcgcgttc ctcgaggacc
      661 tggccgtgcg cgcacgcccg cacggcgaac gcgactggat ggaattgcgc gcgttcgccg
      721 cgaccgagct cgggatgccg gaattgcagc cgtgggactc gaccttcgcc gcggagcgcc
      781 tgcgccagca acgttattcg ttctcggaaa acgaagtgaa gcagtatttc ccgcaagagg
      841 ccgtgctgaa gggtttgttc aaggtcacgg aaacgctgtt tggcgtgagt atccgtcgcg
      901 atgaagccgc ggtctggaat ccggaagtgc gcttttttcg cgtcgaaaac aaggacggtt
      961 cgctggtcgc gcagttctat ctcgacctgt atgcgcgcga gggcaaacgc ggcggcgcct
     1021 ggatggacga cgcccgctcg cggcacaaac gccgtgaagg cggcgtgcag acgcccgttg
     1081 cgtatctgac gtgtaacttc tccgcgcccg ttggcggcaa gcctgcgtgt ttcacgcacg
     1141 atgaagtgat cacgctgttc catgaattcg ggcacggcct gcatcacatg ctgacgcgcg
     1201 tcgatgaact cggggtatcg ggtatcaacg gcgtggaatg ggaggcggtc gagttgccgt
     1261 cgcagttcat ggagaacttc tgctgggagt gggacgtgct caccgacatg tccggtcacg
     1321 tggacacggg cgccacgctg ccgcgcgaac tcttcgacaa gatgctcgcc gcgaagaact
     1381 tccagagcgg tctgggcacg ttgcgccaga tcgttctctc catgttcgat atccagcttc
     1441 acagcgacta cgacccggcc ggcgcaacga acgtcaacga cttcgcgcgt gagatcaacg
     1501 agcgtttcca cgttgtgccg caagcgcctt tctcccgctg gaccaatacc ttcacgcaca
     1561 ttttctccgg cgggtatgcc gcggggtatt acagctacaa gtgggcggaa gtgctctcgg
     1621 cggatgcgta tgccgcgttc gaagaggccg cgaaactggg cggtggatca gtgctcgatg
     1681 cgacaacggg cattcggtac cgtcgcgaaa ttcttgaagt gggaggcagc cggccagcga
     1741 tggactcgtt caaggcattc cgcggacggg aaccgaatat cgatgcgctg ttgcggcata
     1801 acggcatgtc gccggaggcg gcgcattgag gttatgacag cggccatgct gtctgagtga
     1861 ttgaagaaaa ccgttccagc gcgagttgga acggtttttt tatgcgcttt atcgagaggt
     1921 ctcgacttat cgataaagcc gaaaattcac ctcctcagg
//
LOCUS       DATGBK010000612         3821 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_262285, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000612 DATGBK010000000
VERSION     DATGBK010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3821
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262285"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..785
                     /locus_tag="VKJ77_08700"
     CDS             <1..785
                     /locus_tag="VKJ77_08700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45387.1"
                     /translation="MVGREVSDMFPDKPVIADDARVAFKVDNAYVPGWAENVSFSVRA
                     GEVFGFAGLVGAGRTELFEGLIGLRARTAGRIALDGENINPRNPRAAMKHGITYLSED
                     RKGRGLHVDMALKDNLTMMTLERYAHPLLDAQAERDALKKAVGDFGIRTGNLASRARM
                     LSGGNQQKLALAKFLHPDPRVVVLDEPTRGVDVGAKRDIYFLIHALAAEGRAVIVISS
                     ELIELIGLCHRVAVMRGGQLVATLGPGHLTEERLIAHATGTH"
     gene            766..1782
                     /locus_tag="VKJ77_08705"
     CDS             766..1782
                     /locus_tag="VKJ77_08705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018431732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45388.1"
                     /translation="MRPAHTEDVEGSSRLGSFARRLHGVGPLLGLVALCIGGTLLNPD
                     FATFDNAMNVLTRTSFIGIIAVGMTFVIISGGIDLSVGSMAALIAGSMIWIMNALAHG
                     VGGHALAPLAIIAVGIVLALVLGGLFGLAHGLLVTKGRIEPFIVTLGTLGVFRAVLTW
                     LADGGALTLDNNLSDLYGPVYYASLFGIPVPIWVFLIVAAGGVIVLNRTVFGRHVQAI
                     GSNEQVARYAAIRVDSVKIVTYVLLGLCVGVATVLYVPRLGSATPTTGLLWELEAIAA
                     VVVGGTALRGGEGRVIGTVIGAILLSVIANILNLTSIISVYLNAAVQGAVIIFVAFLQ
                     RGRR"
     gene            1845..2807
                     /locus_tag="VKJ77_08710"
     CDS             1845..2807
                     /locus_tag="VKJ77_08710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC45389.1"
                     /translation="MKNILRVVGASLAAVTLAASAASASAADKVTLGVAIPTATHGFT
                     GGIVWWANEAKKELEKAHPDLKIIIKTAAGAPEQANQLQDLVTVNKINALVIFPFESA
                     TLTQPVAQVKKKGVYVTVVDRGLTDTSAQDAYVAGDNTAFGKLPAEYLAKTMDGKGDI
                     VALRGIPTTLDNERWAAFESVIKQHPDMKILDAKYANWNRDDAFKVMQDYLTRFKHID
                     AVWAADDDMMIGVLKAIDQAKRTDIKQVFGGAGSKEAVKRIMDGDKLVQADVSYSPKF
                     IYDAIKLTAEARLKGEALPPTTIIPSVLITKDNAKQFYYPNSPF"
     gene            2852..>3821
                     /locus_tag="VKJ77_08715"
     CDS             2852..>3821
                     /locus_tag="VKJ77_08715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HMC45390.1"
                     /translation="MKTIKGPAIFLAQFLGDTLPFDNLAHLAGWAKGLGYEGIQVPCD
                     PRLINLEQAAKSDAYCDDLLRVVDDAGVSITELSTHLQGQLVAVHPAYDTLFDGFAAA
                     HVRGDPHARTAWAIEQVGFAAAASKRLGLSAHVTFSGALAWPYLYPWPQRPQGLVEAA
                     FDELARRWRPLLDAFDQAGVDVCYELHPGEDLHDGVTFDRFLAAVDHHPRANILFDPS
                     HFLLQQLDYLQFIDIYHERIKAFHVKDAEFRPNGRQGVYGGYSGWVDRAGRFRSLGDG
                     QIDFGAIFSKMAQYDFPGWAVLEWECALKHPEDGAREGAEYIRKHII"
BASE COUNT          727 a         1057 c         1241 g          796 t
ORIGIN      
        1 tgatggtcgg gcgcgaagtg tccgacatgt tcccggataa acccgtcatc gccgacgatg
       61 cccgcgtggc gttcaaggtt gataacgcct atgtaccggg atgggcggag aacgtgagct
      121 tctcggtgcg agcaggcgag gtgttcggct tcgcagggct cgtgggcgcg ggacgcacgg
      181 agctcttcga aggactgatc ggcctgcggg cgcgcacggc gggacgcatt gcgctcgatg
      241 gcgagaacat caatccgcgc aatccccgcg ctgcgatgaa acacggcatt acctatttga
      301 gcgaggaccg caagggacgc gggctgcacg tggacatggc gttgaaagac aacctcacca
      361 tgatgacgct ggagcgctat gcgcatccgc tactcgacgc gcaagcggaa cgcgacgccc
      421 ttaaaaaggc ggtcggcgac ttcggtatcc gcaccggcaa cctggcgagc cgcgcgcgca
      481 tgttgtcggg cggcaatcag caaaagctgg cgctagcgaa gttcctgcat cccgatccac
      541 gcgtggttgt ccttgacgaa cccactcgcg gtgtcgatgt cggcgcgaaa cgcgacatct
      601 atttcctgat ccacgcgctc gccgccgaag gccgcgcggt gatcgtcatc tcatccgaac
      661 tgatcgagtt gattggttta tgccatcgcg tggcggtgat gcgcggcggc cagcttgtcg
      721 ccacgcttgg tcccggacat ctgactgaag agaggttgat cgcgcatgcg accggcacac
      781 actgaagacg ttgaaggatc gagccgcctg ggcagcttcg cgcggcggct gcacggcgtc
      841 gggccactgc tcgggctggt cgcgctatgc ataggcggaa cactgctgaa cccggatttc
      901 gccaccttcg acaacgcgat gaacgtcctc acgcgaacct cgttcatcgg catcattgcg
      961 gtggggatga ccttcgtgat tatctcgggc ggtatcgatt tgtcggttgg atcgatggcc
     1021 gcattgatcg cgggcagcat gatctggatc atgaatgcgc tcgcgcacgg ggtgggcgga
     1081 cacgccctcg cgccacttgc cattatcgcc gtcgggatcg ttttggccct tgttttaggg
     1141 ggtctttttg gtttggcgca tggcctgctc gtgaccaagg gacggataga accgttcatc
     1201 gtgacactgg gcacgcttgg ggttttccgt gcggtgctga cgtggctcgc cgacggcggg
     1261 gcgctcacgc tcgacaacaa tctgtccgat ctctatggcc cggtttatta cgccagtctc
     1321 ttcggtattc ccgtaccgat ctgggtattc ctgatcgttg cggcgggcgg tgtgatcgtg
     1381 ctgaaccgca ctgtattcgg gcggcatgtg caggcgatcg gatcgaacga acaagttgcg
     1441 cgttatgcgg ccattcgcgt ggatagcgtg aagatcgtca cctacgtgtt gctcgggctt
     1501 tgtgtaggcg tggcgacagt gctgtatgtt ccgcgccttg gctccgcaac ccctaccacc
     1561 ggcctgctct gggagcttga agcgattgca gcggtggtcg ttggcgggac cgcgttaaga
     1621 ggtggcgaag ggcgcgtgat tgggacggtg atcggcgcga tcctgttgtc ggtaattgcg
     1681 aacatcctga atctcaccag catcatcagt gtgtatctca acgcggcagt gcagggcgcc
     1741 gtgattattt tcgtagcgtt tttacagcgt ggacgtcgtt gaagtgtgtt cgaaccgtgc
     1801 cctgacatcc tctcaggcgc ctgtcaaaac aatggagaca cagcatgaaa aacattcttc
     1861 gcgtagtcgg cgcctcattg gcggcggtca cgctcgcggc tagcgccgcc tcggccagcg
     1921 ccgccgataa agtcacgctc ggggtcgcta ttcccaccgc gacgcacggt ttcacgggtg
     1981 gcatcgtctg gtgggccaac gaagccaaaa aggaactgga aaaggcacat cccgacctga
     2041 agatcatcat caagacagcg gcaggcgcgc cggaacaagc gaaccagttg caggaccttg
     2101 tgacggtaaa caagatcaat gcgctggtga ttttcccgtt cgaatcggca acgctgacgc
     2161 aaccggtggc gcaggtgaag aagaaaggcg tgtacgtgac cgtggtggat cgcgggctga
     2221 ccgataccag cgcgcaagat gcgtacgtag ccggtgacaa caccgcgttc ggcaagctgc
     2281 cggctgaata tctggcgaag acgatggacg gcaagggcga catcgtcgcg ttgcgcggga
     2341 tcccgactac cctggataac gaacgctggg ctgcctttga atcggtgatc aagcagcatc
     2401 ccgacatgaa gatcctggat gccaaatacg ccaactggaa tcgcgatgac gcgttcaagg
     2461 tcatgcagga ttacctgacg cgtttcaaac atatcgacgc ggtctgggcg gccgatgacg
     2521 acatgatgat cggcgtgctg aaggctatcg atcaggcgaa gcgtacggat atcaagcagg
     2581 tgtttggggg cgcgggatcg aaggaagcgg tcaagcggat catggacggc gacaagctgg
     2641 tccaggcgga cgtttcgtac tcgccgaagt tcatctacga cgcgatcaag ctcactgccg
     2701 aagcgcgttt gaagggtgaa gcgctgccgc ccacgaccat cattccttcg gtgctgatca
     2761 cgaaggacaa cgccaagcag ttctactatc cgaactcgcc gttctgagtt cctggcggct
     2821 tgaagacagc accattcgcg gatcgatgct catgaaaacc atcaaaggcc ccgccatttt
     2881 cctggcgcag tttctaggcg acacattgcc cttcgacaac ctcgcgcatc ttgcgggctg
     2941 ggcgaagggc ctgggttacg aaggtatcca ggtgccgtgc gatccgcggc tgatcaatct
     3001 cgagcaggct gcaaagagcg atgcgtattg cgacgatctg cttcgcgtag tggacgacgc
     3061 gggcgtgagc atcacggagt tatcgacgca tttgcagggg cagcttgtcg cggttcaccc
     3121 ggcctacgac acgctcttcg acggttttgc cgcagcgcat gttcgcggcg atccgcatgc
     3181 tcgcacggct tgggcgatcg agcaggtcgg gttcgcggcg gcggcatcga agcgtctggg
     3241 gttgagcgcg cacgtgacgt tttcgggggc gctggcgtgg ccttatttgt atccgtggcc
     3301 gcaacgcccg cagggtctgg tggaggctgc gttcgacgaa ctggcgcggc gctggcgtcc
     3361 gttgctggat gccttcgatc aagccggcgt cgatgtttgc tacgagttgc atccgggaga
     3421 ggatcttcat gacggcgtga cgttcgatcg ttttcttgct gctgtcgacc atcatccgcg
     3481 agcgaacatc ctgttcgatc cgagtcactt cttgttgcag caactggact accttcagtt
     3541 cattgatatc tatcacgaac gcatcaaggc tttccatgtg aaggacgccg agtttcgccc
     3601 aaacggccgg cagggcgtat acggtggcta ttcggggtgg gtggatcggg cagggcgatt
     3661 ccggtcgctg ggcgacgggc agatcgactt tggggcgatc ttttcgaaga tggcgcagta
     3721 cgattttccc ggctgggccg tgctcgaatg ggagtgtgcg ttgaagcatc cggaggatgg
     3781 cgcgagggag ggggcggaat atatccgcaa gcatattatt c
//
LOCUS       DATGBK010000613         1540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_262287, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000613 DATGBK010000000
VERSION     DATGBK010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262287"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1320)
                     /locus_tag="VKJ77_08720"
     CDS             complement(<1..1320)
                     /locus_tag="VKJ77_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011519205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015295 - solute:proton symporter activity
                     [Evidence IEA];
                     GO_process: GO:0015718 - monocarboxylic acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate:H+ symporter"
                     /protein_id="HMC45391.1"
                     /translation="MATVQGSLLLVYALVAIIALVVLIARFKLNPFITLMVVSVALAL
                     AVGMPMTSILKSFETGVGGTLGHIAIVVGLGTMLGKMMAESGGAERIAQTLIGLFGPK
                     NVHWAMMCIAFLVGLPVFFEVGFVLLIPIAFNVAQRTGTSMIRVGIPMVAGLSVVHGL
                     IPPHPAALLAVTAYNADIGHTIFYALIVGIPTAIIAGPLFSKLIAKFVVLEGVNPMAQ
                     QFIEQDAARATQKLPSFGITLLTVLLPVLLMLVGSWADLIVPAKSTANDVLRLIGHPD
                     MALLLAVLLSFYTFGSARGFNRESILKFTNECLAPTASITLVVGAGAGFGRILIDSGA
                     SKAIVDVATGAHVPLLILAWLVAGLIRVATGSATVAMATAAGIIAPIAAAAASTATGV
                     RPELLVLATGAGSLILSHVNDGGFWLVKEYFGMTVTQTFKTWTVCETI"
     gene            complement(1408..>1540)
                     /locus_tag="VKJ77_08725"
     CDS             complement(1408..>1540)
                     /locus_tag="VKJ77_08725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC45392.1"
                     /translation="TTDLYLNGIYQRSSGAKAWIEGASNPSSNNGQFVTVVGIRHKF"
BASE COUNT          350 a          487 c          451 g          252 t
ORIGIN      
        1 aatcgtctcg cataccgtcc aggtcttgaa cgtctgcgtc acggtcatgc cgaagtactc
       61 cttgaccagc cagaaaccgc cgtcgttgac atgcgacagg atcagcgatc cggcgcctgt
      121 tgcgagcacg agcagctctg gacgcacgcc agttgcggtg gaggcggcgg ccgctgcgat
      181 cggtgcaatg attcccgcgg ccgtggccat ggcaacagtt gccgatcccg tcgcgacccg
      241 aatcaaaccc gcgactagcc acgcgagaat cagcagcggc acgtgcgcac cggtagctac
      301 gtcgacaatc gccttggacg caccgctatc gatcaggatg cgcccgaagc cagctcccgc
      361 acccacgacc agcgtgatgc tggcggtcgg cgccagacac tcgttcgtga acttgaggat
      421 cgattcgcga ttgaacccac gcgccgagcc gaacgtgtag aagctcaaca gcaccgcgag
      481 cagcagcgcc atgtccggat gcccgatcag gcgcagcacg tcattggccg tcgacttcgc
      541 aggcacgatc aggtcggccc aactgcccac gagcatcagc agcaccggca acaagaccgt
      601 cagcagcgtg ataccgaagc tcggcagttt ctgcgtcgcg cgtgcggcat cctgctcgat
      661 aaactgctgc gccatggggt tgacgccctc gagcacgacg aacttcgcga tcagtttcga
      721 gaacaacggt ccggcgataa tcgcggtggg aatgccgacg atcaacgcgt agaaaatcgt
      781 gtggccaatg tccgcgttat aggccgtcac cgccagcaac gcggccgggt gcggcggaat
      841 caggccgtgc acgaccgaga gtcccgcgac catcggaatg ccgacgcgga tcatcgacgt
      901 gccggtacgc tgcgccacat tgaacgcaat cggaatcagg agcacgaaac cgacttcgaa
      961 aaataccggc aggccgacga ggaacgcgat gcacatcatt gcccaatgca cattcttcgg
     1021 accaaataat ccgatgagcg tttgcgcgat acgttcagcc ccgccggatt cggccatcat
     1081 cttgccgagc atcgtaccga gcccgaccac gatcgcgata tgcccgagcg ttccgcccac
     1141 gccggtttcg aatgacttga gaatcgacgt catcggcatg ccgacggcaa gcgcgagggc
     1201 gacagacacc accatcagcg tgataaacgg attgagcttg aatcgcgcga tcagcacgac
     1261 cagcgcgatg atcgcgacca acgcgtagac gagtaacaga cttccctgga cagtcgccat
     1321 ggaggctcca aaatagcggt cggaaaaacc agtcgaaaaa gccggaccgt cgagccgcat
     1381 gggtcttcaa cggtccggca tacctggtta gaacttgtgt cgaatgccca cgacggtgac
     1441 gaactgaccg ttgttgctgg acggattcga ggccccttca atccatgcct tggcgccgga
     1501 cgaacgctgg taaataccgt tcagatagag gtcggtcgtc
//
LOCUS       DATGBK010000614         2978 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_54082, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000614 DATGBK010000000
VERSION     DATGBK010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54082"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1666)
                     /gene="ureC"
                     /locus_tag="VKJ77_08730"
     CDS             complement(<1..1666)
                     /gene="ureC"
                     /locus_tag="VKJ77_08730"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010116693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HMC45393.1"
                     /translation="MTRKAYAEMFGPTTGDAVRLGDTSLLAVIEHDYAVPGDECLHGG
                     GKTLRDGMGLMSGHDSADGALDMLICNAMIIDPVLGVIKGDIGIKDGRIVAIGKAGNP
                     QTMDGVHPLLICGVATTVKDAEGLIATPGGIDVHVHFDSAQLCEHAISSGLTTLIGGS
                     LGPITVGIDCGGSWNVGRMMEASEQWPINFGFLGRGNSSKPGSLIDQLRGGCLGLKIH
                     EDWGATPSVIDTCLSVADEHDFQVQLHTDTLNESGFLEDTVAAMKDRTIHMYHTEGAG
                     GGHAPDIIAVAGRLNCLPSSTNPTNPFTVNTFDEHLDMIMVCHHLNPAVPEDVAFAES
                     RIRAQTISAEDVLHDMGAISMLGSDSQGMGRINEVISRTWQLASKMKDQRGRLSEEKS
                     VRGDNERIKRYIAKYTINAARTFGIAHEVGSLEDGKLADIVLWRPAFFGVKPEVVIKG
                     GFIAWGAMGDSAASLMTCEPVALRPQWGAFGRTPATLAVNFVNPLAIESGLAARLGLS
                     RRLIASHGTRKLTKRDMLHNDACPAISVNPQTFDVLIDGQVIRCDPA"
     gene            complement(1676..2374)
                     /gene="ureB"
                     /locus_tag="VKJ77_08735"
     CDS             complement(1676..2374)
                     /gene="ureB"
                     /locus_tag="VKJ77_08735"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF009671.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HMC45394.1"
                     /translation="MLLTPTEYERLTLYTAAELARRHRHKGLRLNHPEAVAIIADEIL
                     EGAREGRMVADLIAFGSTVLTQDDVLPGVAEMLPMLQVEGSFPDGTKLVTIHQPIRPG
                     KLAPAADEVVPGEILAAEGTIELNVNRQTAVVKAMNTGDRPIQIGSHFHFFEVNKALR
                     FDRAAAFGMRLDIPAGTAVRFEPGDEKEVNLVAFGGTQEIFGMNGLTNGAVSDPDVRQ
                     AAIERATANGFQGA"
     gene            complement(2386..>2978)
                     /locus_tag="VKJ77_08740"
     CDS             complement(2386..>2978)
                     /locus_tag="VKJ77_08740"
                     /inference="COORDINATES: protein motif:HMM:NF013858.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="urease accessory UreF family protein"
                     /protein_id="HMC45395.1"
                     /translation="GLLRDRLVTNATTLEAFVESQALTRWATFDQGIVCASWDAFEAR
                     GAWHEADAYAEAMTLPLSLRTGSRRLGRTLSDVHARLGSPTARELRQDIAGGLSPGHL
                     AAVQGVLWRSFGIGKFEARAMSAHTTCTGAVSAAVRLGIVGHLDAQRILSRLRQPIAD
                     VLDRPPPRLSDLSSATYAADIASLRGEAVDARMFAN"
BASE COUNT          558 a          961 c          884 g          575 t
ORIGIN      
        1 tagcggggtc gcagcgaatg acctgaccgt cgatcaacac gtcaaatgtc tgtggattaa
       61 cgctgatggc gggacacgca tcgttgtgca gcatgtcccg cttcgtaagc ttgcgggtcc
      121 cgtgagacgc gatcagccgc cgggaaagcc caagtcgcgc agcaagcccg gattcgattg
      181 caagcggatt gacgaagttg accgcgagcg tggcaggcgt gcggccgaat gcgccccact
      241 gcggcctcag cgcaaccggc tcgcatgtca tgagggatgc ggctgaatca cccatcgcgc
      301 cccaagcgat aaacccgccc ttgataacga cctcgggttt gaccccgaaa aatgcgggcc
      361 tccacaagac gatgtccgct aacttgccgt cttcgagaga gccgacctca tgggcaattc
      421 caaacgttcg cgctgcgttg atcgtgtact tcgcgatata tcgcttgatt cgttcgttgt
      481 caccgcgaac ggacttctct tccgacaagc gaccgcgctg gtctttcatt ttcgacgcaa
      541 gttgccatgt gcgcgagatc acttcattga tgcgccccat gccctggcta tccgatccca
      601 gcatcgagat cgcgcccatg tcgtgaagga cgtcttcagc tgagatggtc tgcgcacgga
      661 tccgagactc ggcgaacgcg acgtcctcag gcacggctgg gttgaggtga tgacacacca
      721 tgatcatgtc gaggtgctca tcgaacgtat tcaccgtgaa cgggttggtc ggattggtcg
      781 atgagggaag gcagttcagc cgcccagcca cggcgataat gtcaggcgcg tggccgccgc
      841 ccgccccttc cgtgtgatac atgtggatgg tccggtcctt catggccgcg accgtgtcct
      901 ccaggaatcc cgattcgttg agggtgtcgg tatgaagctg cacctggaaa tcatgctcgt
      961 cggctaccga caaacaggtg tcgattaccg aaggcgtggc gccccaatcc tcgtgtatct
     1021 tcaggccgag acaaccaccg cgcagttgat cgattagcga gccgggtttg ctggaattgc
     1081 cccgccccag gaagccgaag ttgatcggcc attgctcgga cgcttccatc atgcgcccaa
     1141 cgttccagga accgccgcag tcgatgccga cggtaatcgg tcccagcgat ccaccaatca
     1201 gcgtggtcag ccccgatgaa atcgcgtgtt cgcaaagctg cgcggaatcg aaatggacat
     1261 gaacgtcgat cccgccgggt gtagcgatca ggccctcggc gtccttgacg gtggtcgcca
     1321 cgccgcagat cagcaacgga tgcacaccgt ccatggtctg gggattacct gcctttccta
     1381 tggcgacaat ccggccgtcc ttgattccta tatcgccctt gattaccccc aggaccgggt
     1441 cgatgatcat cgcattgcag atcagcatgt cgagcgcgcc gtccgcgctg tcgtggcccg
     1501 acatcagccc cattccgtca cgcaaggtct tgccgccgcc atgcaggcat tcatcgcccg
     1561 gcaccgcata gtcgtgctcg atcacggcca gcagcgacgt atcgcccagg cggaccgcat
     1621 cgcccgtcgt cgggccgaac atctccgcat aagcctttcg cgtcatcgtg accattcatg
     1681 ctccctgaaa tccgttagcg gttgcccgtt cgatcgcagc ctggcgaacg tcagggtccg
     1741 agaccgcacc gttggtcaaa ccattcatgc cgaagatttc ctgtgttccg ccgaaggcca
     1801 cgagattcac ttccttctca tcaccgggtt cgaagcggac cgcggtgccc gcgggaatgt
     1861 ccaggcgcat gccgaacgct gccgcccggt cgaatcggag cgctttgttc acctcgaaga
     1921 aatggaaatg gcttcctatc tggattggcc gatcaccggt attcatcgcc ttcaccacgg
     1981 ctgtctgccg gttcacgttg agctcgatcg tcccctcggc ggccaggatc tcgccgggga
     2041 ccacctcgtc cgccgctggc gcaagcttgc ccggccggat cggttgatga atggtcacca
     2101 gcttcgtccc gtccggaaat gagccctcca cttgcagcat gggcagcatc tcggccacgc
     2161 cgggcaacac atcgtcctgg gtcagcacgg tcgacccgaa ggcgatcagg tcggcaacca
     2221 ttcggccctc gcgcgcgccc tccaggatct cgtcggcaat gatggcgacc gcttcaggat
     2281 gattgagcct gagccccttg tgccgatggc gccgggccag ctcggctgcc gtgtacaagg
     2341 tcaggcgctc gtactcagtc ggtgtcaaaa gcatggtgta tctctctagt tggcgaacat
     2401 gcgtgcatcg accgcttcac cgcgtaacga cgcgatgtca gcggcatagg tcgcggagga
     2461 caggtcggac aagcgagggg gtggccgatc aagaacatcg gcaatcggct gtctcaatcg
     2521 ggacaggatg cgctgcgcgt ccaggtgccc gacaatgccg agcctcacgg cggcgcttac
     2581 cgcgcccgta catgtcgtgt gcgccgacat cgcccgcgcc tcgaatttgc cgatgccaaa
     2641 gctgcgccac agcacgccct ggacggccgc aaggtggcca ggagagagtc cgcctgcaat
     2701 gtcttgccgc aactcgcggg cggtgggtga gccgagtcgc gcgtgcacat cggagagcgt
     2761 tctgccgagg cgccgggagc ccgttcgcaa cgacagcggc agcgtcatgg cctccgcata
     2821 ggcatctgct tcgtgccacg ctccgcgagc ctcgaatgcg tcccaactgg cgcagacaat
     2881 gccttggtca aacgtcgccc agcgggtcag tgcctgcgat tcgacaaacg cctccagcgt
     2941 ggtggcgttc gtgaccaacc ggtcgcgcag caatccct
//
LOCUS       DATGBK010000615         1811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_31195, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000615 DATGBK010000000
VERSION     DATGBK010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31195"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            531..>1811
                     /locus_tag="VKJ77_08745"
     CDS             531..>1811
                     /locus_tag="VKJ77_08745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HMC45396.1"
                     /translation="MEIVFTVLILMLAVALSGFATSLLPNALPFTLPLPLIQIAIGAC
                     LAWPGFGLHVTFDPELFMMLFIPPLLFADGWRIPKREFFMQRRAILLLALGLVFMTVG
                     ALGWFLHFMIPAMPLPVAFALAAVLSPTDAVALSGIAGKGRIPANLMHILEGEALMND
                     ASGLVALKFAIAAALTGVFSLRAAAISFVLIAAGGLVIGAAISWLVTSIPGRVAKLSE
                     DDDPAAGVILTLLIPFAAYLIAERFGCSGILAAVSAGMMMNFQSLREGIPTAARIRMT
                     STWTMIEFVFNGMVFILLGLQFPHIIGRALIEAHHDGLQQVGLLLGYVAAVVIALYGL
                     RFAWVWVLRWVSSRGAAKLGVANAVPGVRTVAMTTIGGVRGAITLAGVLSLPEVLPNG
                     SELPGRDLAVFIASATILMSLLIGVVGLPLLLNGL"
BASE COUNT          293 a          573 c          533 g          412 t
ORIGIN      
        1 tgctcgaccg aataccggtc gaaccccgac gtcacgctca gttcgaatgt ccgcggcgag
       61 actggcttca ccttgtcagg attcgctatt gccatcttgc cttccccgtc cggatgcccg
      121 catttaatcc tggttcgtgc aaccggtcat agtcgtggtc atagtcgatc aacgcaatcg
      181 attgcgctcg acatcgcgca accgaagccc tcaattctgg tttcatacac tgccctcgtt
      241 tatcttcgag cggaatctac tcgtcccgtc gccttcgata aagcaagctc cgtgctcacg
      301 caagccctag cgtttcctga ctgcccgccc gcatgtgcac cgccacgaga cgccaggttc
      361 acagcgcagc gtgcgaatgc accaagacag tgcaatatcg atttgccaac tgcgccttca
      421 aagcggccct tcggcgaccc acaggcacgt ccaagctaaa ctttgcccct tcctcgttaa
      481 aagggagcgt cgctgtcgac tcgccgcgct cctgccgatc gcaaaaatct atggaaatcg
      541 tattcactgt cttgatcctg atgctggcgg tcgccctgtc cgggttcgcc accagtctct
      601 tgcccaacgc gttgcccttc acgctgccgc tgcctcttat ccagatagcg ataggcgcgt
      661 gtctcgcgtg gccgggattc ggcctgcacg tcacgttcga tcccgagcta ttcatgatgc
      721 tcttcatccc gccgcttttg ttcgccgacg gctggcgcat cccgaagcgc gaatttttca
      781 tgcagcggcg cgcgatcctg ctgctcgcgc tcggcctcgt attcatgacc gtgggcgcac
      841 tcggctggtt tctgcatttc atgatccccg cgatgccgct gccggtcgca ttcgcgctgg
      901 ccgcagtgtt atcgccgaca gatgccgttg cgctcagcgg catcgccggc aagggccgca
      961 ttccggcgaa cctgatgcac atactggaag gcgaagcgct gatgaacgac gcgtccggcc
     1021 tggtcgcgct gaaatttgcc atcgcggcgg cgctcacggg cgtgttctca ttgcgggcgg
     1081 cggcgatcag tttcgtgctg attgcggcag gcggtctagt gataggcgcg gcaatcagtt
     1141 ggctcgtgac atccattcca ggacgggtcg cgaaactgtc cgaagacgac gatcccgccg
     1201 ccggcgtcat cttgacgcta ctgattccat tcgcggccta tctcattgcc gaacggttcg
     1261 gttgctcggg tattctcgcg gcagtatcgg ccgggatgat gatgaacttc cagagcctgc
     1321 gcgaaggcat tcccacggcg gcccgaatcc gcatgaccag cacgtggacg atgatcgaat
     1381 tcgtgttcaa cggcatggtg ttcatcctgc tcgggctgca gtttccgcac atcattggac
     1441 gcgcgttgat cgaggcgcat cacgacggtc ttcagcaagt cggcttgctg ctcggttatg
     1501 tcgccgccgt ggtgatcgcg ttgtacgggc tgcgtttcgc ttgggtatgg gtgctgcgct
     1561 gggtctcgag ccggggcgcc gcgaaactcg gcgtagcgaa cgcggtgccg ggcgtgcgta
     1621 ccgtcgcgat gactacaatc ggcggcgtgc gcggcgcaat cacgctcgcg ggcgtgttgt
     1681 cgttgcccga ggtgctgccg aatgggtcgg aactacctgg acgcgatctc gcggtcttca
     1741 ttgcatcggc gacgatcctg atgtcgctgc tgatcggcgt ggtcggtttg cccttgctgc
     1801 tgaacggcct g
//
LOCUS       DATGBK010000616         1823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_123300, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000616 DATGBK010000000
VERSION     DATGBK010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123300"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VKJ77_08750"
     CDS             <1..296
                     /locus_tag="VKJ77_08750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HMC45397.1"
                     /translation="LRYSAVLLVGTLLAMCVIYLAPPVVALSLGAKGWPAWLAWIAMC
                     CAYSPMLRYYRRSILWAPLLPVIALFYVSATVGSAIRFWRGKGGQWKARVQAP"
     gene            complement(365..856)
                     /locus_tag="VKJ77_08755"
     CDS             complement(365..856)
                     /locus_tag="VKJ77_08755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45398.1"
                     /translation="MNLTDQLGALESSLDELISAAASIPASPESSTAAVADSQADAAV
                     EPATAAAPAVEEKPTLNVSRPEKNLIAMTIGGVSVTLSPEGVSELIEELSNARASMDV
                     EQPGGLPSGWRFVATKNPVMATQRYANGDRLLVLRHTGHGWVPFSFSPDMVIEMYAML
                     TKR"
     gene            complement(1004..>1823)
                     /gene="hpnA"
                     /locus_tag="VKJ77_08760"
     CDS             complement(1004..>1823)
                     /gene="hpnA"
                     /locus_tag="VKJ77_08760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013691644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hopanoid-associated sugar epimerase"
                     /protein_id="HMC45399.1"
                     /translation="RAAMKGVRYLLHVAADYRIWARDPGEIERANLEGTEATMRAALA
                     EGVERIVYTSSVATLKVSPAGDVVDEAKPAQAHQTIGAYKRSKVLAERAVERMVANDG
                     LPAVIVNPSTPIGPRDVKPTPTGRIIVEAATGKIPAFVDTGLNLVHVDDVANGHFLAL
                     ERGVIGERYILGGENLSLQQMLADIAGLAGRKPPTIKLPRGPLYPLAIGAELYAKFSG
                     KEPFVTVDGLRMSKNKMYFTSTKAERELGYKARPYGEGLSHALDWFRANGYLKK"
BASE COUNT          316 a          587 c          549 g          371 t
ORIGIN      
        1 agttgcgtta ctcggcggtg ttgctggtcg ggacgctgct cgcgatgtgc gtgatctatc
       61 tcgcgccgcc cgtggttgcg ttgtcgcttg gcgcgaaggg atggccggcg tggctcgcgt
      121 ggatcgccat gtgctgcgcg tattcgccga tgctacgcta ctaccgccgc tccatacttt
      181 gggctccgct attgccggtg atcgcgctgt tttatgtcag cgcgacggtt ggctcggcaa
      241 tacggttctg gcgcggcaaa ggcggacagt ggaaggcgcg ggtccaggcg ccttgaccta
      301 ttgatgcagg cgagccgtgc atgggccagc ggtgtgtagc cgatttcgcc cagaccggtt
      361 caactcaccg cttcgtcagc attgcgtaca tctcgatcac catgtcgggt gagaaagaga
      421 acggcaccca gccgtgtccg gtatggcgca acacgagcaa ccgatctccg ttcgcatagc
      481 gttgcgtcgc catcaccggg tttttcgtcg cgacaaagcg ccagccggac ggcaggccgc
      541 ctggctgttc gacgtccatg gaagcgcgcg cgttcgacag ttcctcgatc aactccgata
      601 ccccttcggg gctcaacgtc accgacaccc cgccaatcgt catcgcgatc aggttctttt
      661 cagggcgcga gacgttcagc gtgggctttt cttcaacggc gggcgcagca gccgttgccg
      721 gttcaacagc cgcgtcagct tgcgagtcag caacagcagc agtggaagat tcgggagaag
      781 cgggaataga agcggcggcg gaaatcagct catcgaggct tgattccagc gcgccgagct
      841 ggtcagttaa gttcatgcgt tgtttgcctt gctagccttg catcgaacct gcgattttaa
      901 ctgctgggta ccgcgcaacg tcgctacacg ttgtaacaaa atgcgtgtat gacgcgaaaa
      961 atgccatcaa aacaacaggc gacgcgcgcc acgagtcatc gcttcatttc ttcaggtagc
     1021 cgttcgcgcg aaaccagtcc agcgcgtggc tcagcccttc gccatacggc cgcgccttgt
     1081 acccaagttc gcgctccgct ttcgtcgacg tgaagtacat tttgttcttc gacatcctca
     1141 agccatcgac agtaacaaac ggctccttgc cgctgaactt ggcgtaaagc tccgcgccga
     1201 tcgcaagcgg atacagcggg ccacgcggca gcttgatggt cggcggcttg cgtccggcca
     1261 gaccggcaat gtccgccagc atctgctgca gcgacaggtt ttcgccgccg agaatatatc
     1321 gctcgccgat caccccgcgc tccagcgcga gaaagtggcc gttcgccacg tcatccacgt
     1381 gtacgaggtt caggccggta tcgacgaaag cggggatctt gcccgtcgcc gcttccacga
     1441 tgattcgccc ggtcggcgtc ggcttgacgt cgcgcggacc gatcggcgtg gacggattca
     1501 cgatcaccgc cggcagcccg tcattggcga ccatgcgctc gaccgcgcgc tccgccagca
     1561 ccttgctgcg cttgtacgcg ccaatggtct gatgggcctg ggcaggcttc gcttcatcga
     1621 caacatctcc tgccggactc accttcagcg tcgccacgct gctcgtgtac acaatccgct
     1681 cgacgccctc ggccagcgct gcgcgcatgg tggcctccgt gccctccaaa ttcgcgcgct
     1741 cgatctcgcc cggatcgcgc gcccagatgc ggtagtcggc ggcgacgtgc agcagatagc
     1801 gcacgccttt catcgcggcg cgc
//
LOCUS       DATGBK010000617         2739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_7296, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000617 DATGBK010000000
VERSION     DATGBK010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2739
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7296"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..845)
                     /locus_tag="VKJ77_08765"
     CDS             complement(99..845)
                     /locus_tag="VKJ77_08765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45400.1"
                     /translation="MTNLTGKTALVTGASRGIGRASALALAKEGAQVLVHYSSGEKEA
                     DAVVAEIRAAGGNAQKLAANLRDADGPHTLAKRVRAVVGHRLDILVANAGVSKSASIE
                     ETTVEDFDDLFAVNVRAPYFLVQQLLPVMCKGSSIVLLSSLAAHAVVGKLPAYAATKG
                     AVDTLVKHLASALGERGIRVNAVAPGVVATEMSSFTKTDEGRGMAIGMQALKRVAQPD
                     DIGSAVAFLASDAARWITGETLRVDGGSKL"
     gene            complement(923..1786)
                     /locus_tag="VKJ77_08770"
     CDS             complement(923..1786)
                     /locus_tag="VKJ77_08770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC45401.1"
                     /translation="MTSHTHQTAPTQFVDANGIRFAYRRFGKSGGVPLVLNIHFTGTM
                     DHWDPAVTNGLAQGRELILFNNAGISSTSGEVPQSIEEMAANAAAFIKALGLTQVDVL
                     GFSMGGLIAQELALAEPQLVRRLILVGTGPRSGEGMASLTPEAQDIFGATYEEPDHLW
                     LRVHFSPSDASQAAGRKFLQRLRLRAEGRDPEANDKVAPAQLAALAKWGAPRENPFDY
                     LLALAQPTLVINGDNDVIIYSINSWILQQNIPNAQLIIYPDANHGSLYQYPQRFVTHV
                     AQFLSESDEHA"
     gene            1969..>2739
                     /locus_tag="VKJ77_08775"
     CDS             1969..>2739
                     /locus_tag="VKJ77_08775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45402.1"
                     /translation="MELRHLRYFLAVAETGSLTVAAERRLHTSQPSLSRQIRDLEDEV
                     GAELFNRSARGVELTAAGKAFLDHARLALTQVDAAVEAARRAAQPTKQVFALGFLTGQ
                     EMTWLPRAMQVLRDELPNIDVTVSSHYSPDLADALARGKLDLAFLRAEPGFDLDYRVV
                     SREKLIALMPSDHPLTERKTIRPEDFVGKPFIMASNKAKVLHAVIERYLEQNGVNITP
                     EHGVDNLAMAMSLVASTRGLALMPEYANNLLPWSVVSRP"
BASE COUNT          530 a          789 c          856 g          564 t
ORIGIN      
        1 gggtttgcta cgcgccggat tcatattaaa tttaaatgtg gatacctaat caatatgatt
       61 tttcatacac gccaaaaacg tgctggaatt cgttcgggtt agagcttcga gcctccgtct
      121 acgcgcagcg tttcgccggt aatccagcgc gccgcatccg atgcgagaaa cgcgactgca
      181 ctgccaatgt catcgggttg cgcaacccgt ttcagcgcct gcatgccgat ggccatgccg
      241 cgtccctcgt cagtcttcgt gaaactcgac atctcggttg cgactacacc gggcgccacc
      301 gcattcacgc ggataccgcg ttcgccaagt gcggaggcga gatgcttgac gagggtatcg
      361 accgcgccct tggtcgccgc gtaggcaggc agcttgccga ccaccgcatg cgcggcgagc
      421 gacgacagca gaacaatgct gctgcctttg cacattaccg gcagcagttg ctgcacgagg
      481 aaatagggtg cgcgcacatt cacggcgaac aggtcatcga aatcttcgac agtcgtttcc
      541 tcgatgctcg ccgacttcga aacaccggcg ttcgccacca gaatgtccag tcgatggccc
      601 accacggcgc gtacacgttt ggcgagcgta tgcgggccgt ctgcatcgcg cagattcgcg
      661 gcgagctttt gagcgttccc gccggccgca cggatttcgg caacgaccgc gtccgcttcc
      721 ttttccccgc tgctgtagtg aaccagcact tgagcgcctt ctttggcaag cgcgagtgca
      781 ctagcccggc cgatcccgcg tgaagcgccg gtgacgagcg cggtctttcc ggtgaggttg
      841 gtcatgatca gactcctgta ggtttaatga aaacgatctg gcaattcagt gcatcggcat
      901 cagcatgaac atgagcgtcg gctcaggcgt gttcgtcgct ctcggacagg aactgcgcca
      961 catgcgtcac gaagcgctgg ggatactggt acagcgagcc atggttggca tccgggtaaa
     1021 tgatcagctg cgcgtttgga atgttctgct gcaggatcca cgagttgatc gaatagatga
     1081 ttacgtcgtt atctccgttg atcacgagcg tgggctgagc gagcgccaaa aggtagtcga
     1141 aagggttctc gcggggcgcg ccccacttgg cgagtgcggc gagttgcgcc ggtgcgacct
     1201 tgtcgttggc ttcagggtcc cggccttcgg cgcgtaggcg caagcgctgc aagaacttgc
     1261 ggccggctgc ctggctcgca tccgacggcg agaagtgcac gcgaagccac aagtgatccg
     1321 gctcctcgta agtcgcgccg aaaatatcct gtgcttccgg cgtgagcgat gccatgcctt
     1381 cgccgctgcg ggggcccgtg ccaaccagga tcaggcggcg tacgagctgc ggctcggcga
     1441 gcgccagttc ctgtgcgatc aggccgccca tcgaaaaacc gagcacgtcg acttgcgtga
     1501 gcccgagtgc cttgataaag gcggcagcgt tggcggccat ctcttcaatc gattgcggta
     1561 cctcgcctga cgtgctggag atcccggcgt tgttaaacag gatcagttcg cgaccctgcg
     1621 cgagtccgtt ggtgacagcc ggatcccagt gatccatcgt gccggtgaag tggatgttta
     1681 agacaagcgg cacgccgccg ctcttgccga agcgccgata agcgaagcgg atgccgtttg
     1741 catcaacgaa ttgcgtcggg gcggtttggt gcgtatggct ggtcatggcg attctccgat
     1801 atagatcaaa ggcatggagc gagatagatt ccaagtcgtc gcgatgaaca ggtcgttacc
     1861 gtttcgccgc tgcctgatgc gtaatctagt tgggtcttgc agaaagtaaa aagactttgt
     1921 aggctgacgg gcatgcctgc gaggcatggc taaaattgag gggagcgtat ggagcttcga
     1981 catttgcggt atttcctggc cgtcgcggag accggcagcc tgaccgttgc ggctgagcgc
     2041 cgcctgcaca cgtcgcagcc gtcgcttagc cggcaaatcc gtgatctgga ggacgaggtt
     2101 ggagcggaac tgttcaaccg tagtgcgcgt ggggttgagc tgacggctgc gggcaaggct
     2161 ttcctcgacc atgcacggct ggcgcttaca caagtcgatg ccgcggtcga ggctgcgcgc
     2221 cgcgccgcgc aacccacgaa acaggttttc gcgctcggct tcctgaccgg tcaggaaatg
     2281 acctggctgc cgcgcgcgat gcaggtgctg cgcgatgaac tgccgaacat cgacgtgacg
     2341 gtatcgagcc attattcgcc ggacctcgcc gatgcgcttg cacgcggcaa gctcgatctt
     2401 gcgtttttgc gtgctgaacc ggggtttgat ctggactatc gcgtagtcag ccgcgaaaag
     2461 ctgattgcgt tgatgccaag cgatcatccg cttactgagc gaaaaacgat ccgtccggag
     2521 gacttcgtag gcaagccctt catcatggct tcgaacaagg cgaaggtgct gcacgcagtg
     2581 atcgagaggt atctggaaca gaacggggtc aacatcacgc ctgaacacgg cgtcgacaat
     2641 ctggcgatgg ccatgtcgct cgtcgcatca acgcgcgggc tggcgctgat gccggagtat
     2701 gcaaacaacc tcttgccgtg gtcggtcgtc agccgccct
//
LOCUS       DATGBK010000618         2025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_100183, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000618 DATGBK010000000
VERSION     DATGBK010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100183"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            308..880
                     /locus_tag="VKJ77_08780"
     CDS             308..880
                     /locus_tag="VKJ77_08780"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HMC45403.1"
                     /translation="MASMAAFVIAITTCSSAALADGDDTPFTNLIALSSQRLALAEPV
                     ARWKWAHHESITDQPREAALLAGIDSRAKSAGIDPAFAQLFFRDQIEASKDVQNALFD
                     NWRKSRAPEGTPPDLAHDTRPKLDSVTHALLSALAGVEPLRHADDCPLRLADSIARWK
                     HLTRYDSAQNAPLTRALSHVCAAGGVGAVG"
     gene            complement(877..2025)
                     /locus_tag="VKJ77_08785"
     CDS             complement(877..2025)
                     /locus_tag="VKJ77_08785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HMC45404.1"
                     /translation="MLPIVTTNSVSSEPLVFVDLETTGGAFGVDRITEIGVVEVGPAG
                     VTQWSSLVNPQQPIPFFIQQLTGISDSMVRNAPTFETIAHDLLARLDGRLFIAHNARF
                     DHGFLRSEFKRAGIKFQPDVLCTVQLSRAIYPAERRHGLDALIDRHALVPTARHRALA
                     DADLLWQFWQHLHRAFSADVVHDYIEQVARRFRLAGDIDEDTIEQIPAGCGIYVFYGE
                     DDVPLYVGRSVRLRQRVRAHLSGVKRSAKDLRLAELVRRVEWTATGGEIGAMLVEGRS
                     VARLRPAHNRLSKARRDDPSHAPWTYPGAIAIEETDATTSARVWHVVDAWQYFGMAGS
                     LDEAAQLRAAAPAACFELSTYRILSERLSRGLTIVPLAATACLSGEPV"
BASE COUNT          388 a          671 c          595 g          371 t
ORIGIN      
        1 cccgaagtaa ttgctgaaac gcagcacgcc cacggcgttt gcagatgttg tgcaagccgc
       61 ggtttccgca cgcttgatcg ttgcagcata tctttgcagc agcgccggat tcgcacgcgg
      121 gtattaacag cacgatcgaa atagcacgac cggtttcacc ttataacgcc acgaacgcgg
      181 cgcgtttcat gatcgcctca ggatcacacc ctacgcgcgc ccagcgcgtc atacgttaag
      241 ctgcggcttt ctcgctctgg ctccggtatt catgcttcgc cattcccttc tgcaagttct
      301 ccgcgccatg gcttccatgg ctgcctttgt tattgccatc accacttgtt cctcggcagc
      361 tctcgctgat ggcgacgaca cgcccttcac caatctcatt gcgttgtcgt cacaacggct
      421 agccctcgcc gagccggtcg cgcgctggaa atgggcgcat cacgagtcca tcaccgatca
      481 accccgtgaa gccgcgttgc tggccggtat cgatagccgc gcgaaatccg ccggaatcga
      541 tccggcgttt gcgcagctct tctttcgcga tcagattgag gcgagcaagg acgtgcagaa
      601 cgccctcttc gataactggc ggaagtctcg tgcgcccgaa gggacgccac cggacctcgc
      661 ccacgatacc cggccgaagc tcgatagcgt gacccacgcg ttactctccg cgctggctgg
      721 cgtggagccg ttgcgccacg ccgacgactg cccgctgcgg ctggccgaca gcatcgcgcg
      781 ctggaaacat ctcacccgct acgattccgc ccagaacgca ccgctcacac gcgcgttgtc
      841 gcacgtgtgc gcggcgggtg gggtgggtgc ggttggctag accggctcgc ctgacaggca
      901 cgcggtggct gcaagcggca cgattgtcag tccgcgcgac agacgttcgc tgagaatccg
      961 gtacgtcgat aactcgaagc atgccgcagg cgctgctgcg cgcagttgcg cggcttcgtc
     1021 gagcgacccg gccatgccga aatactgcca ggcatcgaca acatgccaga cccgcgcgct
     1081 ggtcgtcgca tcggtttcct ctatcgcgat ggcgccagga tacgtccagg gcgcatggct
     1141 cgggtcatcg cgacgcgctt tggacagccg gttatgtgca ggacgcaacc gtgcaaccga
     1201 gcgcccttcc accagcatcg cgccgatctc gccgcccgtc gcggtccact ccacacggcg
     1261 gacgagttcc gcgagccgca gatccttcgc cgaccgcttc acacccgaca gatgcgcacg
     1321 cacgcgctgg cgcaaacgca cgcttcgtcc aacatacagc ggcacatcgt cctcgccata
     1381 aaacacgtag atcccgcagc cggccggaat ctgttcgatg gtgtcctcgt cgatatcgcc
     1441 ggcaagccgg aaacgccggg caacctgttc tatatagtca tgcacgacat cggcggaaaa
     1501 cgcgcgatgc aggtgttgcc agaattgcca gagcagatcg gcgtcggcaa gtgcgcggtg
     1561 gcgcgccgta ggcacgagcg cgtgccggtc gatcagcgca tcgagcccat gtcggcgctc
     1621 cgccggatag atggcgcgcg acaactggac cgtgcacagc acatcgggct ggaacttgat
     1681 gccggcccgt ttgaactcgc tgcgcaggaa gccgtgatca aaccgcgcgt tgtgcgcaat
     1741 aaacagccgc ccgtcgagac gggccagcaa atcatgcgcg atcgtttcga acgtcggcgc
     1801 gttgcgcacc atcgaatcgc tgataccggt gagttgctgg ataaagaatg gaatcggctg
     1861 ttgcggattg actagcgaac tccactgcgt cacgccggcc ggtccgacct cgaccacgcc
     1921 gatttcggtg atgcgatcca cgccgaaggc accgcccgtg gtttcgagat cgacgaaaac
     1981 cagcggctct gaactaacac tattagtagt aacgattggg agcac
//
LOCUS       DATGBK010000619         4277 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285566, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000619 DATGBK010000000
VERSION     DATGBK010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4277
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285566"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..572)
                     /locus_tag="VKJ77_08790"
     CDS             complement(<1..572)
                     /locus_tag="VKJ77_08790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HMC45405.1"
                     /translation="MNSTALQVAGSAEPDFRSRDFLLDHVRHTLAFYARTARDDSGGF
                     FHFFKDDGTVYDRTTRHLVSSTRFVFNHAMAFRHFGGQQHQDNTRHAFAFLRNAHWDA
                     VNEGYDWEIEWRDGAKRTLDGTRHCYGHAFVLLACAHAAMAGIDEAKPLIDETFQLMD
                     KHFWDAAAGLYADEATPDWQLSSYRGQNAN"
     gene            complement(569..1594)
                     /locus_tag="VKJ77_08795"
     CDS             complement(569..1594)
                     /locus_tag="VKJ77_08795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC45406.1"
                     /translation="MATTIRDVARAASVSIGTVSRALKNQPGLSETTRERVVEAARQL
                     GYDAAQLRTRIRRVTFLLHRQHNNFAVSPFFSHVLHGFEEACRERRLVPSVLTAGPTH
                     DLAQQMRLHAPDAVAVAGFIEPELLTHLCSMNRPVVLIDLRAPGFRSVNVDNARGAAL
                     AMQHLFALGRKRIAFIGGSLAHYSISQRAMGYRLAYFEAGLLFNPTLEVTTQPAIDAD
                     LAAADAMERLIAQARAQSAPMPDAVFAYNDAAALAAMRVCLAHGLRVPEDIAFVGFDD
                     IPAAAQNTPPLTTVTVDKEALGRRGVELLLETAQNHDDANTTDTLVPVRLIPRASSAI
                     TRTQTSV"
     gene            complement(1839..2489)
                     /locus_tag="VKJ77_08800"
     CDS             complement(1839..2489)
                     /locus_tag="VKJ77_08800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016343996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009312 - oligosaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009877 - nodulation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HMC45407.1"
                     /translation="MTPDPSTQEPNSQEPTVQEPNAQDYFAGLYQRSDDPWLLRERWY
                     ERRKRALTLAALPDEHYRRAYEPGCANGELTVELAPRCETLLAADLNPAAVELARQRV
                     AHLQHVRVEQRAMPDDWPDGEFDLIVISEVAYYLNEAQLAGLIAKLRASLAEGGTLIA
                     CHWRRPIEGWPHSGDHVHQELRAKLTLPRLSCYQDDDMVLDVWSSSAESVHQREAR"
     gene            complement(2486..3262)
                     /locus_tag="VKJ77_08805"
     CDS             complement(2486..3262)
                     /locus_tag="VKJ77_08805"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HMC45408.1"
                     /translation="MEPVVTHSANDRAIKGNGTPEATWRNSGRLSSLPEVDPAILVPP
                     GARAVIVSPHPDDEILGTGGLLAQLSDLGRKVLIIAVTDGTASHPDSPEWPTARLAAT
                     RPQETRDALQRLRMRHVALVRLHLPDGGGETFESELAEALKADLEPGDIVFGTWRFDG
                     HPDHESVGRAVTTVAGALDLPFVEIPVWTWHWATPEDSRVPWSRARRIVLDAATLARK
                     VHAVQAFRSQIEADDSTGRAPVLPDHVLERLTRPYEVVLI"
     gene            complement(3250..>4277)
                     /locus_tag="VKJ77_08810"
     CDS             complement(3250..>4277)
                     /locus_tag="VKJ77_08810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HMC45409.1"
                     /translation="GAASESILGPFLRELRLERGSDTDTAHALRALIDAGFDRLPLPG
                     HGATLERWRMLAAVAACDLALVKLFEGHTDALAIMAELGEGEVPESGQAWGVWAAEPP
                     TARLVAKAASDTTCVTLHGTKAWCSGASSITHALVTAWNERDEPILVAVDLRQPGVRI
                     TRDGWMAVGMSASASVDVHFDHAKATSIGAPRAYLERAGFWHGGGGIAACWFGAAAAI
                     GEFVKRDAARRADPYKLAHLGAIDTALSGTASLLREAAARIDREPQADAMPDAFRVRL
                     AAERAAVDVVERAGRALGAGPLCRNRHFASLMADLPVYIRQSHAERDEAALAERLING
                     ECGTWNL"
BASE COUNT          777 a         1311 c         1379 g          810 t
ORIGIN      
        1 atgttggcgt tctgcccgcg atacgacgac aactgccagt cgggggtggc ttcatcggcg
       61 tatagaccgg cggccgcgtc ccagaaatgc ttgtccatca gctggaaggt ttcatcgatc
      121 aagggtttgg cttcatcgat acctgccatt gccgcgtgcg cgcacgccag caaaacgaac
      181 gcgtggccgt agcaatgccg cgtgccgtcg agcgtgcgct tcgcaccgtc gcgccattcg
      241 atttcccagt cgtagccttc attcaccgcg tcccagtgcg cgttgcgcag gaacgcgaac
      301 gcgtgacggg tgttgtcctg atgctgctgg ccgccgaaat gacgaaacgc catcgcgtgg
      361 ttgaagacga agcgcgtgct gctgacgagg tgtcgcgtgg tgcggtcgta gaccgtgccg
      421 tcgtccttga aaaaatgaaa aaaaccgccc gagtcgtcgc gggcggttcg tgcgtagaac
      481 gccagtgtgt ggcgaacgtg atcgaggaga aaatcgcggc tgcgaaagtc cggttctgcc
      541 gaacccgcca cctgcagagc ggttgagttc ataccgatgt ctgtgtccgt gttatggccg
      601 agctcgcgcg agggatcagg cgcacgggca cgagcgtgtc ggttgtgttc gcgtcatcgt
      661 ggttctgagc ggtttccagc agcaattcca cgccgcgccg ccccagcgct tccttgtcga
      721 ccgtgaccgt ggtgagcggc ggcgtgtttt gagctgcggc gggaatatcg tcgaaaccga
      781 caaacgcgat gtcttccggc acccgcaaac cgtgcgcgag acagacgcgc atggcagcga
      841 gggccgcagc atcgttatag gcgaaaacgg cgtcgggcat cggtgcggat tgcgcacgag
      901 cctgcgcgat caggcgctcc atggcgtcgg cggcggccag gtcggcgtcg atagccggct
      961 gtgtggtgac ttcgagcgtc gggttaaaga gtaatcccgc ttcgaaatat gccagccgat
     1021 aacccattgc gcgctgggag atgctgtagt gcgccagcga gccgccaatg aacgcgatcc
     1081 gcttgcgccc gagcgcaaac aggtgctgca tggcgagcgc ggcgccgcgc gcgttgtcga
     1141 cgttgaccga acggaaaccg ggcgcgcgca aatcgatcag tacgaccggc cggttcatgg
     1201 agcacagatg agtaagcagc tccggctcga taaatccggc aacagcgacg gcgtccggtg
     1261 cgtgaaggcg catctgctgg gcgagatcat gcgtcgggcc ggctgtcagt actgacggca
     1321 ccagccgccg ctcccggcag gcttcttcga aaccgtgcag cacgtgggaa aagaacgggc
     1381 tgaccgcgaa attattgtgc tggcgatgaa gcaggaaagt gacgcgtcgg attcgggtgc
     1441 gaagctgggc ggcgtcgtac ccaagttgcc gcgccgcttc caccacgcgt tcacgcgtag
     1501 tttccgacaa gcccggctgg tttttaagcg ctcgcgatac cgtgccgatc gacacactgg
     1561 ctgcgcgcgc gacatcgcga atggttgtgg ccatcgggtt tctcgtctcc gcgttgcgtg
     1621 gatttgtttg tcggcgctga ggcgttgtac gcacgtgatg tgtttactaa cgacgtcagg
     1681 ttcgcacgat ttcggcgatt gtatagtaaa acagcgcgaa aacttggcca agaaacctta
     1741 gagaaaaccc gtaagttgtt tgttgataag gctttcagtt gccttcattg tttagtaaat
     1801 gtggcaagaa aattcaactt aacccgcgtt ggcaagcgct agcgcgcctc ccgttgatgg
     1861 acggattccg cacttgatga ccatacatcg agcaccatgt cgtcgtcctg gtagcacgac
     1921 aaccgcggga gcgtgagttt tgcgcgaagt tcttgatgta catgatcacc tgaatgcggc
     1981 catccctcga tcggccgccg ccaatggcag gcgatcagcg ttccgccctc cgcgagtgac
     2041 gccctcagct tcgcgatgag cccggctagt tgcgcttcgt tcaggtaata cgctacctcg
     2101 ctgattacga tcaggtcgaa ctcgccgtcc ggccagtcgt cgggcatggc gcgctgctcg
     2161 acccgaacgt gctgaagatg cgcgactcgc tggcgtgcaa gttcgaccgc ggccggattc
     2221 aaatccgccg ctagcagcgt ctcgcatcga ggcgccagct cgactgtcag ttcgccgttc
     2281 gcgcaaccgg gttcatacgc acgacggtaa tgttcgtcgg ggagggcggc cagcgtcaac
     2341 gcgcgcttgc gccgctcgta ccagcgttcg cgaagtagcc aggggtcgtc gctgcgttga
     2401 tagaggccgg cgaaatagtc ctgcgcgttt ggttcctgta cggttggttc ctgcgagttc
     2461 ggttcctgcg tgcttgggtc tggtgtcata tcagcacgac ctcatagggt cgggtgagac
     2521 gctcgagcac gtggtcgggc aggacgggtg cgcgacccgt cgagtcgtcg gcttcgatct
     2581 gactccgaaa cgcctggact gcgtgaacct tgcgggcaag cgtggcagca tccagcacga
     2641 tgcgccgcgc acggctccag ggcacgcggg aatcctcggg tgtcgcccag tgccaggtcc
     2701 acaccgggat ttctacgaac ggcaggtcga gcgcaccagc caccgtggtc acggcccggc
     2761 cgactgactc gtggtcggga tggccatcga aacgccaggt tccaaacacg atgtcgcccg
     2821 gttcgagatc cgctttcagc gcttccgcca gttccgattc gaacgtttct ccgccgccgt
     2881 ctggaaggtg caaacgcacc agtgcgacat gcctcatgcg cagacgttgt agcgcgtcgc
     2941 gcgtttcttg gggacgggtc gcggcgagcc tcgctgtggg ccattccggc gaatctggat
     3001 ggctcgcagt gccgtccgtc acggcgatga tcagcacctt gcggcccaga tcggacagtt
     3061 gcgcgagcag gccgcctgtg cccagaatct catcgtccgg atgcggcgaa acaatcacgg
     3121 cgcgcgcgcc gggcggcacg aggatagccg gatcgacttc gggcaggctc gagagccgcc
     3181 cggagtttcg ccaggtcgct tccggcgtgc cattcccctt gatggcgcgg tcgtttgccg
     3241 agtgagttac tacaggttcc atgtaccgca ttccccattg ataagtcgtt cagcaagcgc
     3301 ggcttcatca cgttcggcat gactctgccg gatatagaca ggtagatcgg ccatcaggct
     3361 ggcgaaatgg cggttacggc agagagggcc ggcacccagc gcacggccgg cgcgctcgac
     3421 gacatcgacc gctgcccgtt ccgccgcgag gcggactcga aaggcatcgg gcattgcgtc
     3481 ggcctgcggc tcgcggtcaa tccgtgctgc cgcctcgcgc agcaggctgg ctgtgccgga
     3541 gagcgctgtg tcaatcgcac ccagatgggc gagcttgtac gggtcggcgc ggcgcgcagc
     3601 atcccgtttg acgaattccc cgattgccgc agccgccccg aaccagcatg cagcaatccc
     3661 gccgccgcca tgccagaagc cggctcgctc cagataggcg cgcggcgcgc cgatgctcgt
     3721 ggctttagcg tgatcgaaat ggacgtccac gctcgcgctc gccgacatgc cgacagccat
     3781 ccagccatca cgcgtgatgc gcacgcccgg ctgacggaga tcgactgcga cgagaattgg
     3841 ctcatcccgc tcgttccagg cggtaacgag ggcatgggta atcgaggacg ctccagaaca
     3901 ccaagccttc gtaccgtgca acgtgacgca ggttgtgtcg gacgctgctt ttgcgacgag
     3961 gcgtgccgtg ggcggttctg ccgcccaaac gccccacgct tgaccacttt ccgggacctc
     4021 cccttcacct agttcagcca tgattgcgag cgcgtccgta tggccttcaa acagcttcac
     4081 cagtgcgaga tcgcacgctg caaccgccgc gagcattcgc cagcgttcaa gcgtcgcgcc
     4141 atgcccgggc aggggcaggc gatcaaaacc agcgtcgatc aaggcgcgga gcgcatgagc
     4201 ggtatcagtg tccgagccgc gctccaagcg gagttcacgc aaaaatgggc cgagaatgga
     4261 ttcgctcgcg gccccgc
//
LOCUS       DATGBK010000620         2707 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_31340, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000620 DATGBK010000000
VERSION     DATGBK010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2707
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31340"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..750
                     /locus_tag="VKJ77_08815"
     CDS             <1..750
                     /locus_tag="VKJ77_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC45410.1"
                     /translation="AKRGKRVQALGSAKNHLVVMPDANLDQAVDALIASSYGSAGERC
                     MATSVAVAIGSIADELVERLAPRVRALKIGGGMEPDLDMGPLISAAHRTKVLGYIDAG
                     VAAGAKLVVDGRGHTVPGHKEGFFLGGSLFDDVKPDMSIYREEIFGPVLSVVRVPDLA
                     SAIALVNAHELGNCVSLFTSDGRAARTFSRQIHVGMVGINVPSPVPMAWHSFGGWKRS
                     LFGDHHAYGQEAVRFYTHYKSVMQRWPDSVA"
     gene            complement(1027..2130)
                     /locus_tag="VKJ77_08820"
     CDS             complement(1027..2130)
                     /locus_tag="VKJ77_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006478880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC45411.1"
                     /translation="MKYQLGAFALLAASMAASAQSSVTLYGRADGGVEYLNHIANGTG
                     GNASRWSAEGGDWGTSMLGFKGTEDLGGGNSALFDLETALQLMNGTTGGGKMFSRRAY
                     VGLKNETWGQLQAGRNLFIDSDGVWEFDPFVQQAVSSASLVRGRNWQQTSNNVEYHSP
                     VWHGLDAQGQYAFGNQTSGFNNGAQGDFGRSDGIMLSYHSPLFDLRGIYDELRDSNGR
                     LSNIFTASREYFVGANVRVQKFKIQAAYTHYAAPDSPAGVADSADHYWLGATYQATPH
                     WAVTAAGFYIRVGDGGGDLSHDPGSHAMLYALGTTYNLSARTFLYGTVAYVNNSKNAT
                     FSVFATPRDSSSPTSPIAGESQTGAYIGIMHVF"
     gene            complement(2493..>2707)
                     /locus_tag="VKJ77_08825"
     CDS             complement(2493..>2707)
                     /locus_tag="VKJ77_08825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="RND transporter"
                     /protein_id="HMC45412.1"
                     /translation="AASAADTSVNLSLALYRRGAVSYLDVVESQSAALESERSVIQLR
                     TQQLDANVDLIRALGGGWTKDDLTGG"
BASE COUNT          477 a          855 c          853 g          522 t
ORIGIN      
        1 gcaaagcgcg gcaagcgcgt gcaggcgtta ggcagtgcga agaaccacct ggtcgtcatg
       61 cccgacgcca atctcgatca agccgtcgat gcgctgatcg cctcgtcata tggctcggcc
      121 ggcgaacgct gcatggcgac ctcggtcgcg gtagcgattg gaagtattgc agatgagctg
      181 gtcgagcgtc tcgcgccgcg ggtgcgcgcg ctcaagatcg gcggcggcat ggagcccgat
      241 ctcgacatgg ggccgctcat ctccgccgcg catcgcacca aggtgttggg ctatatcgat
      301 gcgggcgttg cggcaggcgc caagctcgtc gtcgatggtc gcggccatac cgtgccgggc
      361 cacaaagaag gcttctttct cggcggctcg ctctttgacg acgtgaaacc tgatatgagc
      421 atctatcggg aagagatttt cgggccggtc ctgtctgttg tccgcgtgcc tgatctcgcg
      481 agtgcgatag cactcgtcaa cgcgcacgaa ctggggaact gcgtgtcgct cttcacatct
      541 gacggccgcg cggcgcgcac attctcccgc cagattcacg tgggcatggt cggaatcaat
      601 gtgccgagtc cggtgccgat ggcgtggcat tcgttcgggg gctggaagcg atcgctgttc
      661 ggcgatcatc acgcgtacgg ccaggaagcc gtgcgctttt acacgcacta caagagcgtc
      721 atgcagcgct ggcccgacag cgtcgcctaa ggcgcggaat tcgcgatccc catggcccaa
      781 gccaagtaag cctacccgag cgttgcgaca ctgctctttc atccgatgca gtacacggca
      841 tgaataagcg aacgattcca gaaggcgagt ttgattaagt gactgtcggt gcgggcacgg
      901 cgggctactt gcccgccaat cgcttgagcc cctgtcacgc gatgcccgcc gcgcaggcac
      961 accggcgcgg catcgggtcg gccggttgcg ctcgggcatg tcggcaatgc gaaaaaaact
     1021 gtcgcgtcag aacacgtgca ttatcccgat gtacgcgccg gtctgcgatt cgcctgctat
     1081 cgggcttgtc ggcgagctcg aatcgcgcgg cgtcgcgaac accgagaaag tggcgttctt
     1141 gctgttgttc acgtacgcaa cggtgccgta caggaacgtg cgcgcgctca ggttgtaggt
     1201 ggtcccgagc gcatagagca tcgcgtggct acccgggtcg tgcgagaggt cgccgccgcc
     1261 gtcgcctaca cggatgtaga agcccgccgc cgtcacggcc cagtgcggtg tggcctgata
     1321 ggtggcgccg agccagtagt ggtcggcgct gtcggccacg cccgcgggcg aatcgggcgc
     1381 cgcgtaatgc gtgtacgcgg cctggatctt gaatttttgt acgcgcacgt tggcgcccac
     1441 gaagtactcg cgcgaggccg tgaagatgtt ggataagcga ccgttcgaat cgcgcagctc
     1501 gtcgtagatg ccgcgaaggt cgaagagcgg cgagtgatag ctcaacatga tgccgtccga
     1561 gcggccgaaa tcgccttggg cgccgttgtt gaagccgctc gtctggttgc cgaaggcgta
     1621 ctgcccctgc gcgtcgaggc cgtgccagac ggggctgtga tattcgacat tgttgctcgt
     1681 ttgctgccag ttgcgcccgc gcacgagcga ggccgacgag accgcctgct gcacgaacgg
     1741 atcgaattcc cacacgccgt cgctgtcgat gaagagattg cgccctgcct gcagctggcc
     1801 ccacgtctca ttcttcaagc cgacgtacgc gcggcgcgag aacatcttgc cgccgcccgt
     1861 ggtgccgttc atgagctgca gcgcggtttc gaggtcgaac agcgcgctgt tgccgccgcc
     1921 aaggtcctcg gtccccttga agccgagcat gctcgtgccc cagtcgcctc cttccgcgct
     1981 ccagcggcta gcgttgccgc ccgtgccgtt ggcgatgtga ttcaggtatt cgacaccacc
     2041 gtcggcgcgg ccatacagcg tcacgctcga ctgtgccgat gcggccatgc tggctgcgag
     2101 cagcgcgaat gcgcccagtt gatatttcac gtcagctccc caggtcgact cttctttcgt
     2161 tgtccgcgcc gtccctagcc ctgcgcgcgg cgcccgccgg caacgcatga ttcaatgcgg
     2221 accggccggg cgcataccgc gtgacaaata tagcgtgtca cgtacactgc gactatgctg
     2281 cacagcagcg gccgcagatt tcggcgaccg ggacgagatc cttctcttca acactcactt
     2341 accgagaacg cgaaaccctt gaatgacaca caatagatat gtgcttacaa cctccccgtc
     2401 aagcgcctcg ttgaatccgc ccgcctgctg acctcgactt aggcagcggc aagatagggc
     2461 ttccattgcg aagaagcact cgaccccgta tttcaaccgc ctgtcaggtc atccttggtc
     2521 cagccaccgc cgagcgcgcg aatgaggtct acattcgcgt ccagctgctg cgttcgaagc
     2581 tggatgacgc tgcgttccga ttcgagcgca gcggattgcg actcgaccac gtccagatag
     2641 ctgactgcac cgcgccgata gagtgcgagc gacaggttga ctgacgtgtc agctgcgctt
     2701 gcggcgt
//
LOCUS       DATGBK010000621         1976 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_216033, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000621 DATGBK010000000
VERSION     DATGBK010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216033"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1901)
                     /locus_tag="VKJ77_08830"
     CDS             complement(<1..1901)
                     /locus_tag="VKJ77_08830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE domain-containing protein"
                     /protein_id="HMC45413.1"
                     /translation="MPYSRGTDVRETWDRWLRPAHRGYAIGLALGMLLLGFAATAVVY
                     SVSADLIRREATLRFDNDTRAVEQSIGMRVRLYTDVLVTMQALFSAGDDISRSEFRDF
                     VNGLNLPERYPGFQTLNYAACIRNAEVAQFVDTQHRDPILRQAGIDFAIRPPGARPVY
                     FVLSYVEPLAPNLPSVGLDLGLEPRRLAALEQSRDTGQPVSSGRLILAEGTNPHVGIA
                     LRLPVYRKGLPHDTVDQRRRAYIGSVGAGIRVRDLMTQMLSEQTLRVIHFRIFDAGTL
                     NAPAVPPSPSTMLFDSIAGVGDMTPDKGKKGAATLAYPSSSPDDAFNTSASDGRQLAK
                     SLVQPFGGRRWLIVFAADPATLTGAQRRLPVFSAAAGTVISVLLGALGYALSSSRVRA
                     VRLAEQITHTLRESEIARAEAQRIAHLGDWRVSLDGGIVLLSKEMARLLGWQRGPPTL
                     KALITVIEPADRAALVAQAKRTLRTGAPFQLECRYRSTRGRRGWLHLIGHAYGPPEER
                     ALRGTALEITQRKSAERAQQQEHAVTLQLATATSEFDVFRQLVDALVDGMGWEAGAFW
                     PTESGQRESLCATWRTRVPELERWLLSRPDSPSAPMAEVATTPCWSSGRNALKRLAHA
                     QWLAAAGITT"
BASE COUNT          352 a          658 c          622 g          344 t
ORIGIN      
        1 gtggtgatcc ccgccgcagc aagccattgg gcgtgcgcga gacgtttcag ggcgttcctt
       61 cccgagctcc agcaaggtgt cgtcgcgacc tccgccatcg gagccgatgg gctatccggc
      121 ctcgacagca gccagcgctc gagctcgggt acccgcgtgc gccaggtggc gcacagcgac
      181 tctcgctgac cggactccgt cggccagaac gcacccgcct cccagcccat gccgtccacc
      241 agcgcgtcca ccagttgccg gaaaacatcg aactcgctcg tcgccgtcgc cagttggagc
      301 gtgacggcat gttcctgctg ctgcgcgcgt tccgccgact ttcgctgcgt gatttccagt
      361 gcggtgcctc gcagcgcccg ctcctcgggc ggaccgtacg catgcccgat cagatgaagc
      421 catcctcttc gaccgcgcgt ggaccggtag cggcattcga gctggaaggg ggcgcccgtg
      481 cgcaacgtcc tttttgcttg ggccaccagc gccgcgcgat ccgccggttc gattacggtg
      541 ataagagcct ttaacgtcgg cggcccacgt tgccagccga gtaggcgcgc catctctttc
      601 gacagaagga ctattccgcc gtcaaggctg acccgccagt cgcccaggtg cgcaatgcgc
      661 tgcgcctcgg cgcgggcgat ttcactctca cgcagcgtat gcgtgatctg ttcggccagt
      721 ctgacggccc gcacacgcga actcgacagc gcgtagccca gcgcgcccag caagacgctg
      781 atgaccgtgc ccgcagcagc ggaaaatact ggtaaacgac gttgcgcacc agtcaatgtc
      841 gcagggtcgg cggcaaagac aatcagccag cgccgccccc caaaaggttg tacaaggctc
      901 ttcgccagtt gccggccgtc gctcgccgaa gtattgaacg catcatcggg cgacgatgac
      961 gggtaggcga gcgtcgcggc ccccttcttg cctttgtctg gtgtcatgtc acctacgccc
     1021 gcgatgctgt cgaacagcat cgtggacggc gacggcggca cggcgggcgc gttaagcgtg
     1081 cccgcgtcaa agatgcggaa gtggatcacg cgcagggttt gctcgctgag catctgcgtc
     1141 atcaggtccc tgacgcggat gcccgctccc accgagccga tataggctcg tcgccgctga
     1201 tcgacggtat cgtgtggcag gcctttccgg tagaccggca ggcgcaacgc gatgcccacg
     1261 tgcgggttgg taccctcggc gagaatcagg cgcccgctgc tgacaggttg gcccgtgtcg
     1321 cgcgattgct cgagggcggc cagccgccgt ggctccaggc caaggtcgag gccgaccgat
     1381 ggcagattcg gtgccagcgg ttcaacatag gacagcacaa agtagacggg acgggcaccg
     1441 ggtgggcgaa tcgcgaagtc aataccggcc tggcgcagga tcgggtcgcg gtgctgtgtg
     1501 tcgacgaatt gcgccacctc cgcgttgcgg atgcacgccg catagtttag ggtctggaaa
     1561 ccggggtagc gctcgggcag attcaggcca ttcacgaagt cgcgaaactc gctacgcgat
     1621 atatcgtcgc ccgcgctgaa gagcgcctgc atcgtcacca gcacatcggt atacaggcgc
     1681 acgcgcatgc cgatgctttg ctcgacagcg cgggtgtcat tgtcaaaacg cagtgttgcc
     1741 tctcgccgga tcaggtcggc actgaccgaa tacacgaccg ccgttgccgc gaatccgagc
     1801 agcagcatgc cgagggccag accgattgca taaccacggt gagccggacg cagccatcgg
     1861 tcccatgtct cgcgcacatc cgtcccccgg gaatacggca tatacaacga ttcgcgctcc
     1921 gcagatcgcg ctattcatgc tttccgccgg aaaacattgc gcgcgcgtta ccgact
//
LOCUS       DATGBK010000622         2563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_7402, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000622 DATGBK010000000
VERSION     DATGBK010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7402"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            10..2313
                     /locus_tag="VKJ77_08835"
     CDS             10..2313
                     /locus_tag="VKJ77_08835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HMC45414.1"
                     /translation="MIATLAALAAVVLMAETGRPMCVGGYMVVSQVGEAEVSVAASLD
                     GEGALLDWRYVARTPGLTGGEAVAQDPGPYSSSHATSLVDDPAALIPASAHTFACESF
                     VDEIARDHHRDPVSFRLDHLDPVEYGGARELIDTVAQRAAWNVDKQDRKTRRANNEVA
                     HGRGFAFDEHDAASGDNPTPDYSAWIVDLDVNRLTGDVALKRVVAGRASGRRRIGRMN
                     GVPARQIAAAASRALGLQLTARPSHDETPGAQAVSHELAPASTASGEIATQTAVGDRL
                     EIDVSPAAAAIANALYDATGVRFRAPPFTPERVLAALGGTRESAASNGTIGNKLRHAK
                     RSLWTTLAAGGVGSLIGLACTLWPLRAPIEAIARPAASTWSDATIARGRQIAEFGDCA
                     VCHTAPGGVVNAGGLGLETPFGMVYTTNLTPDPRTGIGNWSFAAFDRAMRQGISRDGH
                     HLYPAFPYTAFTKMSEADMTALYAYLMSQPAVENTPPVTRLPFPLNQRALVAGWNALY
                     LKQGEFKPDPTRSALWNRGAYLVDGAGHCSACHSPRNAFGAEKGGRLYLTGGSAEGWV
                     APSLVANSKAPVRWTEQALYDYLKTGFSHEHGVAAGPMAPVVASLSTLPEEDVRAMAH
                     YVASLSPQPVAVSAPVPVSEPTHDLATSAVTLQRLDSGRRIFEGACAVCHAATGGVGN
                     FGVRPLLSLNTSVSEGTPDNLLNVIQNGIDAPATDALGYMPGFKDSFDDRQIADLVSY
                     IRATFAPNEVAWKDLAQASARIRKHVH"
     gene            2412..>2563
                     /locus_tag="VKJ77_08840"
     CDS             2412..>2563
                     /locus_tag="VKJ77_08840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC45415.1"
                     /translation="MAPSKLPSGSSQAAQDIVSRYEVSEQIGHLLRKAYQRHLAIFSQ
                     TIDDPQL"
BASE COUNT          442 a          797 c          813 g          511 t
ORIGIN      
        1 gccgatccgc tgattgccac gcttgccgcg cttgctgcgg ttgttttgat ggcggagacc
       61 ggccggccga tgtgcgttgg cggttatatg gtggtgtctc aggtcgggga ggcagaagtt
      121 tctgtcgcgg cgtcgctaga cggcgaaggc gcgctgctcg actggcgcta cgtggcgcga
      181 acgccgggtt taacaggcgg cgaagcagtc gcgcaagatc cgggtcctta ttcttcatcc
      241 catgccacgt cgcttgtcga cgatcccgcc gcgctgatcc ctgcctcggc gcataccttc
      301 gcatgcgagt ctttcgtcga tgaaatcgcg cgtgatcatc atcgcgatcc ggtttcgttt
      361 cgtctcgatc acctcgatcc ggtggagtac ggcggcgcga gggaactgat cgacacggtg
      421 gcacagcggg cagcgtggaa cgtcgataag caggatcgca agacgcgccg cgcgaacaac
      481 gaagtcgcgc atggccgtgg tttcgcgttc gacgaacacg atgcagcatc cggcgataat
      541 ccgacgcccg actattcggc gtggatcgtc gatctcgatg tgaaccgcct gaccggtgac
      601 gttgcgctca agcgggtggt agcggggcgt gcaagcggac gccgcaggat tggccgcatg
      661 aatggcgttc ctgcccggca gatcgctgca gcggcgtcgc gcgccctggg tctgcaactc
      721 actgcgcgac cctcgcacga cgagacgccg ggcgcgcaag ccgtatcgca tgaacttgct
      781 cctgcatcga cggcatccgg cgaaatcgct acgcagaccg ctgtcggcga tcgtctggaa
      841 atcgatgtct ctccggctgc agcggctatc gccaatgcgc tttacgatgc gaccggcgtg
      901 cgctttcgag cgccgccgtt cacgccggag cgcgtgcttg cggcgcttgg cggaacccgt
      961 gaatcggcgg cttcgaacgg cacgatcggc aataaactga ggcacgcaaa acgctcgcta
     1021 tggaccacgc tcgctgctgg cggtgtaggc agcctgatcg ggctggcgtg cacgctatgg
     1081 cccctgcgtg ccccgattga agcaatcgcc cgcccggctg catcgacgtg gtccgatgcc
     1141 accatcgctc gtggtcgcca gattgccgag ttcggagatt gcgcggtctg ccatacggcg
     1201 cccggcggcg tggtcaatgc cggtggtctt ggccttgaaa ctccttttgg catggtctac
     1261 acgaccaacc tgacgcccga tccgaggacg ggcatcggta actggtcgtt cgctgcgttc
     1321 gaccgggcga tgcgccaggg catttcacgc gatggccatc atctataccc cgcgtttccc
     1381 tacaccgcgt tcacgaagat gagcgaggcc gacatgaccg cgctatacgc gtatttgatg
     1441 tcgcagccag cagtcgaaaa tacgccgcct gtcacacgct tgccatttcc actgaatcag
     1501 cgtgctttgg tcgctggatg gaatgcgctc tatctgaagc agggcgagtt caagcccgac
     1561 ccgacgcgct cggcattgtg gaaccgtggc gcgtatctcg tggatggcgc cggacattgc
     1621 agcgcgtgcc attcgccgcg caatgcattc ggggcggaga agggcggtcg cttgtacctg
     1681 acgggcggca gcgccgaagg ctgggtggcg ccgtcgcttg tcgccaattc gaaagcgcct
     1741 gtgcgatgga ctgagcaggc gttgtacgac tatctgaaga cgggtttttc gcatgagcat
     1801 ggcgtcgccg cgggtccaat ggcgccggtc gtcgcgagct tgtcgacgct gccggaagag
     1861 gacgtgcgcg cgatggcgca ttacgtggct tcgctgtcgc cacaaccggt cgctgtttcc
     1921 gctcctgttc cggtgtcaga acccacgcac gatctcgcca cgagcgccgt gaccctgcag
     1981 cgactcgaca gcggccggcg gatttttgaa ggtgcatgcg cggtctgcca tgcagcgacg
     2041 ggcggtgtcg gcaacttcgg ggtgcgtccg ctgctctcgc tgaacaccag cgtgagcgaa
     2101 ggcacgccgg ataatctgct gaacgttatc cagaatggca ttgatgcccc cgctaccgac
     2161 gcgctcggct acatgccggg cttcaaggat tcattcgacg accgtcagat cgccgatctc
     2221 gtgtcttata tccgcgctac attcgcaccg aatgaagtgg cgtggaaaga ccttgcgcag
     2281 gcgtcggcgc gaatccggaa acacgtgcat tagcggcagg cggaacgttg ctccggctac
     2341 cttgacgaac ggcgctgctc cgcccgggcg agcgcccatt cccatttcac cctatcgaca
     2401 ttcgaactat catggcgcct tcgaagcttc cttccggttc atcgcaagct gcgcaggaca
     2461 ttgtgtcccg ctatgaggtg tcggagcaga tcgggcatct tcttcgcaaa gcctatcagc
     2521 gccatctcgc tatcttcagc cagactatcg acgaccctca act
//
LOCUS       DATGBK010000623         1548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285597, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000623 DATGBK010000000
VERSION     DATGBK010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285597"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            275..1339
                     /gene="recA"
                     /locus_tag="VKJ77_08845"
     CDS             275..1339
                     /gene="recA"
                     /locus_tag="VKJ77_08845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004635402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HMC45416.1"
                     /translation="MAADDKAVALTNALMQIERQFGKGSIMKMGDFQDKMAFEVIPTG
                     SIALDLALGVGGLPRGRIVEIYGPESSGKTTLALHAIAEAQRMGGTAAFIDVEHALDP
                     NYAQALGVNLDNLLVSQPDAGEQALDIAEMLIRSNAVDVIVLDSVAALITKSELEGDM
                     GDTHVGLQARLMSQACRKLTAAISRSKAVMIFINQLREKIGVMFGSPETTSGGRALKF
                     YASIRLDVRKLEQIKVGTDVVGSRTRVKVVKNKVAPPFRQAEFDITYGRGISKMGSIL
                     DVALERNIVGKSGSWWTYGETRIGQGRENAKAYLEEHTDLADELDFKIREALKATVST
                     NGHGKPVGAVVAATVEDDAE"
     gene            1365..>1548
                     /locus_tag="VKJ77_08850"
     CDS             1365..>1548
                     /locus_tag="VKJ77_08850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecX family transcriptional regulator"
                     /protein_id="HMC45417.1"
                     /translation="MLALRRLTEAQLWKKLGAKGYPDDEIAAAVASCKRDGYVDDALF
                     ASLYVEGARKAVGDARL"
BASE COUNT          345 a          452 c          454 g          297 t
ORIGIN      
        1 atcggcctgg gcgagagcgc cgatgcgctg cagccgttcg atccggccca atttaccaag
       61 gctctcttcg aaggcagcta gcctcgccca atcgaacagg agttcgattc aatcatgcga
      121 atagcgtttg gtaattggac cttgcacccg atgcccttgg gcgtgatggt gaatgcggcg
      181 cgaaaatttg ccgtgtgggt tcgctcagag tgcctaactg gtggcacacc cgtccggcaa
      241 actcggagca tcacttcacc gacggagcac tactttggca gcagacgata aagccgtagc
      301 cctcaccaat gccctgatgc aaatcgagcg tcagttcggc aagggctcga tcatgaaaat
      361 gggcgatttc caggacaaga tggccttcga ggttatcccg accggatcga tcgcactcga
      421 ccttgcactg ggcgtcggcg gtttgccgcg cggccgcatc gttgaaatct acggaccgga
      481 atccagcggt aaaacgacct tggcactgca cgccatcgct gaagcacagc gtatgggcgg
      541 cacggcagcc ttcatcgatg tcgagcacgc gctcgatcca aattacgcgc aagcactggg
      601 cgttaatctc gataacttgc tcgtctcgca gcctgatgcc ggcgaacagg cactcgatat
      661 cgccgaaatg ttgattcgct cgaacgccgt cgacgtgatc gtgctcgact cggtcgccgc
      721 cctcatcacc aagtccgaac ttgaaggcga catgggcgat acgcacgtcg gtctgcaagc
      781 gcgcttgatg tcgcaagcct gccgcaaact cacggccgcg atctcgcgct cgaaagccgt
      841 catgatcttc atcaatcagc tgcgtgaaaa aatcggcgtc atgttcggca gccccgaaac
      901 gacgtcgggc gggcgtgcgc tcaagttcta cgcatcgatt cgcttagatg ttcgcaagct
      961 cgagcagatt aaagtcggca ccgatgttgt cggctcgcga acgcgcgtaa aagtcgtgaa
     1021 aaacaaagtc gcgccgccgt tccgccaagc cgaattcgat attacgtacg gccggggcat
     1081 ctcgaagatg ggttcgattc tcgacgttgc actcgaacgc aatatcgttg gaaagagcgg
     1141 ttcgtggtgg acctacggcg agacgcgcat cggtcaaggc cgcgagaatg ccaaggcgta
     1201 tctcgaagaa cacaccgatc ttgcggacga gttagatttc aagatccgcg aagcactcaa
     1261 agcgaccgtt tcaaccaacg gtcatggcaa gccggtcgga gccgttgttg cagcgacagt
     1321 cgaggacgac gccgagtaga tcggccagag caagtgcgct cgcgatgctg gcattacgcc
     1381 ggctgaccga ggcacagctc tggaaaaagc tgggtgccaa aggctacccg gatgacgaaa
     1441 tcgccgcagc cgtcgcgtcg tgcaaacgcg acggctacgt tgacgatgca ttgtttgcgt
     1501 cactctacgt tgagggcgcc cgcaaagccg tcggcgatgc gcgccttg
//
LOCUS       DATGBK010000624         4481 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_239137, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000624 DATGBK010000000
VERSION     DATGBK010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4481
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239137"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VKJ77_08855"
     CDS             <1..300
                     /locus_tag="VKJ77_08855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC45418.1"
                     /translation="DEMPGGAAYVAKYKARFNEDVQTYSPYAYDGAMAMFAAMKSANS
                     TDPAKYLPLLAKTDMAGVTSKQLAYDSKGDLKNGGITLYKVVDGKWTTLQSVGGK"
     gene            complement(366..2057)
                     /locus_tag="VKJ77_08860"
     CDS             complement(366..2057)
                     /locus_tag="VKJ77_08860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019720021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC45419.1"
                     /translation="MASQAFLQARDFLLRHRDDYAAAYKDFAWPELTEFNWALDWFDE
                     YARSNLAPALWVVEENGEETKLSFAELSARSNQLANWLRQQGVQRGDRILLMLPNQPA
                     LWETMLAAMKLGAVTIPATMLLTPADIADRMTRGEVKHVIVASSETAKFDSIDKTKTR
                     IAVAIPPSAALSEGWLNFADAFNESPSFEPEGRTLATDPLLLYFTSGTTSRPKLVLHS
                     HQSYPVGHLSTMYWIGLKPGDVHLNISSPGWAKHAWSCVFAPWNAGATVFIHNTSRFS
                     AKATLETLVKHQITTLCAPPTVWRMMIQEDLSAYKVHLREVVGAGEPLNPEIIERVKK
                     AWNLTLRDGFGQTETTAQIANSPSQPMKPGSMGRPLPGYRITLLDHDDNPAKEGELAL
                     ILDPRPLGLMDGYVDDPSKTQEAMRGGHYRTGDVACIDDDGYFTYVGRSDDVFKAADY
                     RISPFELESVLIEHPAVGEAAVVPSPDALRLSVPKAFVALRNGYEPTKETAGEILKFA
                     AQKLAAYKRIRRIEFYELPKTISGKIRRVELRKTEEARSSDARRENEYWEDDFGA"
     gene            complement(2197..3903)
                     /locus_tag="VKJ77_08865"
     CDS             complement(2197..3903)
                     /locus_tag="VKJ77_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007745825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HMC45420.1"
                     /translation="MTSAVPSSNALSTTGARLVVDALLTHGVERVFCVPGESFLAILD
                     SLHDETSRIQTIVCRHEAAAANMAEAIGKLTGRPGVALVTRGPGATHASIGVHTAFQD
                     STPMILLIGQCAREHMDREAFQEIDYRRMFGQMAKWVAQIDDPRRIPEYLSHAFHIAT
                     SGRPGPVVLALPEDVLSDACEAVPGAPRYQRIAAAPAPAQIARLNDMLVASKKPFVIA
                     GGSGWTPEATADFARFVEAWQLPVGCAFRFQDTLDNNHPNYAGDVGLGINPALSARIR
                     EADLLLVLGPRMGESTTGGYTLLDIPKTKQTLIHVHQGAEELGRVYSADLPIVSGMPE
                     MVSAMVALKPPAVIPWNGAIEAAHDAYLAWRKPRPMLGDVQLGEIMEQLSEHLPADAI
                     VTNGAGNYATWLHRHYAYRHFRSQVAPTSGAMGYGVPAAIAAKSLYPDLVVVAFAGDG
                     CFMMSSQELATAMQYKLAVIFVVVNNQQYGTIRMHQERHYPNRVHGTALTNPDFAAYA
                     RAFGAHGELVESTAQFMPAFERAVKTGLPSVIEIRIPQDASTPAATLDQVREQGEKLR
                     QK"
BASE COUNT          828 a         1297 c         1382 g          974 t
ORIGIN      
        1 gatgaaatgc cgggtggcgc ggcttatgtt gcgaagtaca aggcgcggtt caacgaagac
       61 gtgcaaacgt actcgccgta tgcgtacgac ggcgcaatgg ccatgttcgc tgcaatgaag
      121 agcgccaatt cgaccgatcc ggcgaagtac ctgccgctgc ttgctaagac tgacatggca
      181 ggtgtgacgt cgaagcaact cgcgtatgac tcgaagggcg atttgaagaa cggcggaatc
      241 acgctgtaca aggtcgtcga cggcaagtgg acgacgctgc aaagcgtggg tggtaagtaa
      301 ggtttaagtt tgggtttagg tttggaagcc ccgcatgcgt tctgcgctgc ggggcttttt
      361 gctcactacg cgccaaaatc gtcttcccag tattcattct cccgccgcgc gtcgctgctt
      421 cgcgcttctt cggttttcct tagttctacg cggcgaatct tgcccgagat cgtcttcggc
      481 aattcataga actcgatgcg tcgaatgcgc ttgtacgcgg ccagtttctg cgcggcgaac
      541 ttcaggattt caccagcggt ttccttcgtc ggttcatatc cgttgcgcaa cgcgacgaac
      601 gctttcggca ccgataaacg caacgcgtct ggactcggca ccaccgcagc ttcgcccacc
      661 gccggatgct cgatcagcac gctctccagc tcaaacggac tgatccgata atctgccgcc
      721 ttgaagacat cgtcggagcg gcctacgtag gtgaagtaac catcgtcgtc gatacacgcc
      781 acatcgccgg tacgataatg gccgccgcgc atggcctcct gcgttttcga cggatcgtcc
      841 acatacccgt ccatcaaacc cagcggcctg gggtcgagta tcagcgcgag ttcgccttcc
      901 ttagcggggt tatcgtcgtg atcgagcagc gtgatgcggt agccgggcaa tggccggccc
      961 atcgatcccg gtttcatcgg ctgactcggc gaattggcta tctgtgcggt ggtttcggtc
     1021 tggccgaaac catcacgtaa cgtgaggttc cacgcctttt tcacgcgctc gataatctcg
     1081 ggattcaatg gttcacccgc gccaacgact tcgcgcaagt gcaccttata cgccgataaa
     1141 tcctcctgga tcatcatccg ccagacggtc ggcggcgcac acagcgtagt gatctggtgt
     1201 ttgacgagcg tttccagcgt cgccttcgcg ctgaagcgcg acgtgttgtg gatgaacacg
     1261 gtcgcgcccg cgttccacgg ggcgaagaca caactccacg cgtgttttgc ccagccgggc
     1321 gagctgatgt tgagatggac atcgccgggt ttcaagccga tccagtacat ggtcgacaag
     1381 tgcccaaccg gatagctctg atggctgtgc agcacgagct tcgggcgact cgtcgtgccg
     1441 ctcgtgaagt acagcagaag cggatcggtc gcgagcgtcc tgccttcggg ctcgaacgag
     1501 gggctttcgt tgaaggcatc ggcgaagttc agccagcctt cggacaacgc agcgctcggc
     1561 ggaatagcta cggctatgcg ggttttggtt ttatcgatgg aatcgaactt cgcggtttca
     1621 ctcgatgcca cgatcacatg cttcacttca ccacgcgtca tgcggtcggc tatgtccgcc
     1681 ggggtcagca acatggtcgc cggaatggtc acggcgccga gtttcatcgc ggcgagcatg
     1741 gtttcccaaa gtgccggctg gttcggcagc atcagcaaga tccggtcgcc tcgctggacg
     1801 ccttgctgcc tcagccagtt ggccagctga ttcgatctcg ccgataactc cgcaaacgag
     1861 agcttcgtct cctctccgtt ctcctcgacc acccacagcg ccggtgcaag gttgctgcgt
     1921 gcgtattcat cgaaccagtc gagtgcccag ttgaactccg tcaattcggg ccacgcgaag
     1981 tctttgtacg cggcggcgta gtcgtcgcga tgacgtagca gaaagtctct tgcctgcaga
     2041 aatgcttgcg atgccatggt gttgcgtctc ctggattttg ttcgcttttg cgtgagcctt
     2101 gatctggctc ttttgcgcgg gtctttgtga aacctgcttg ttcgcgagtg ttcaaggccg
     2161 ccacggtgcg tggccggcgc tcacgtgctc atttgcttac ttctgccgca acttctcgcc
     2221 ctgctccctc acttgatcca gggttgccgc cggggtgctc gcatcctgcg gaatcctgat
     2281 ttctatcacc gatggcaacc ccgttttcac cgcgcgctcg aatgcgggca tgaattgcgc
     2341 ggttgattcc acgagttctc catgcgctcc gaacgctcgc gcgtaggccg cgaagtcggg
     2401 gttcgtcagc gccgtgccat gcacgcggtt cggatagtgg cgttcctgat gcatacggat
     2461 cgtgccgtat tgctggttgt tcaccaccac gaaaatcacg gcgagtttgt actgcatcgc
     2521 cgtggccaac tcctggctcg acatcatgaa gcatccatcg cccgcaaacg ccaccacgac
     2581 caggtccgga tacaacgact tcgccgcgat tgctgccggt acgccataac ccattgcgcc
     2641 actcgtcggc gcaacctgcg accggaaatg ccgatacgca tagtgtcgat gcagccacgt
     2701 cgcataattt ccagcaccat tcgtcacgat ggcatcggcg ggaagatgct cgctgagctg
     2761 ctccatgatc tcgccgagct ggacatcgcc gagcatgggc cgcggcttgc gccacgcgag
     2821 atatgcgtca tgtgccgctt caatagcgcc gttccacgga atgactgcgg gcggtttgag
     2881 cgccaccatc gccgacacca tttccggcat gcctgaaaca atcggcagat ccgccgaata
     2941 cacacgcccc agttcttccg cgccttggtg cacgtggatc agcgtttgtt tcgtcttggg
     3001 tatgtcgagc aacgtgtagc cgccggttgt cgattcgccc attcgggggc cgagtaccag
     3061 gagcaggtcg gcttcgcgaa tgcgagcgga gagggcggga ttgatcccga ggccgacatc
     3121 gccggcatag tttgggtggt tgttgtccag tgtgtcctgg aaccggaagg cgcatccgac
     3181 cggcagttgc cacgcctcga cgaaacgcgc gaagtcggcg gtggcttcgg gtgtccatcc
     3241 gctgccgcca gcaatgacaa acggtttctt cgatgccacg agcatgtcgt tcaaacgcgc
     3301 gatctgcgcg ggcgcgggtg ccgcagcgat gcgctgataa cgcggcgcac ccggcacggc
     3361 ttcgcatgcg tcgctcagca cgtcttccgg caaggcgagt acgaccgggc ctggccggcc
     3421 ggaggtcgca atgtggaatg catggctcag atattcgggg atacggcgcg gatcgtcgat
     3481 ttgcgcgacc cacttcgcca tctgcccgaa catgcgtcga tagtcgattt cctgaaatgc
     3541 ttcgcggtcc atgtgttcgc gtgcgcactg gccgatcagc aggatcatcg gcgtcgaatc
     3601 ctggaatgcc gtgtggacgc cgatcgatgc atgcgtggcg cctgggccgc gggtaaccaa
     3661 cgccacgccg gggcgcccgg tcagtttgcc gattgcttcg gccatgtttg ccgctgcagc
     3721 ttcgtggcgg cacacgatgg tctggatgcg gctggtttcg tcgtggaggg aatccaggat
     3781 ggcgaggaag ctttcgccgg gtacgcagaa gacgcgttca acgccgtgtg tgaggagtgc
     3841 atcgacgacc aggcgtgcgc cggtggtcga aagggcgttg gaggacggga cagcagatgt
     3901 catgcgatga aatctcccag aaggtttcgc gcggacggcg atgggcattg gatctcatag
     3961 cttacgcttg cgcggggcgc tggcgctagg gaggggtttt gctgggtggc gtagagcgga
     4021 acgcgaacat caaaccagct tcgctgctga atcccgactg gccgactttg gtgctcttgt
     4081 agtgacgagc ctgccgtgct cgaccgtgat gcgttagctc attggctagt ttcgcggtta
     4141 cgcatgaatc ggtatcttaa tgagtagcgg ccaaatcaag cggagggcag gccgggcatc
     4201 acgatgacga ctcagtctgg acatctggag catcgctagc tgcgttcgcg tcgcggtcta
     4261 acgagcaata gcggaaatca gcgatgcgtt cagcccgggc cggcataaat gggtggaatg
     4321 cgtatgtagc gctgagtgcc atactttgtg aggacgaata aggtgggata tgcgggtttt
     4381 taagaccaaa tggttcgcgc gctgggccga aagaaggggt gaccgatgcg gcgctgcaag
     4441 cggctgtcga ggaaatgggc caaggtctga ttgatgcgaa t
//
LOCUS       DATGBK010000625         1540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_331591, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000625 DATGBK010000000
VERSION     DATGBK010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331591"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..822)
                     /locus_tag="VKJ77_08870"
     CDS             complement(73..822)
                     /locus_tag="VKJ77_08870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006218219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HMC45421.1"
                     /translation="MKVLVPVKRVVDANVRVRVKADGSAVDIANVKLSMNPFDEISVE
                     KAVRLKEAGTASELVVVSCGVQGCQETLRTAMATGADRAILVQTDAELQPLAVAKLLK
                     ALVDKEQPQLVMLGKQAIDDDANQVGQMLAALLGWPQATFASKLSVEAGKALVTREID
                     GGLETIEVDLPAVVTTDLRLNTPRYATLPNIMKAKKKTLDVVTPDALGVDISPRLSTL
                     KLAEPTKREAGVRVADAADLVAKLKNVAHVI"
     gene            1212..>1540
                     /locus_tag="VKJ77_08875"
     CDS             1212..>1540
                     /locus_tag="VKJ77_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR family transcriptional regulator"
                     /protein_id="HMC45422.1"
                     /translation="MHVIEAPPPHRPPVFLATKVFPPRLPAGLIDRPRLVALAGKAEY
                     KRLTVIKAPAGFGKTSLALTWLNGLNASGAYVAWLSLDTEDDEPARFFHHLARALRNA
                     CASVGASA"
BASE COUNT          272 a          509 c          453 g          306 t
ORIGIN      
        1 aacgtcgcgg ccttcagcgt ctgattatcg tgttctgcaa taacaagtat ggacatgtct
       61 ccctcttcct ttttagatga cgtgtgcgac gttcttcagc ttggccacga gatcagcggc
      121 gtcggcgacg cgaacgcctg cctcgcgctt cgtcggctca gcgagcttca gtgtcgacag
      181 ccggggcgag atgtcgacgc cgagcgcatc gggcgtcacc acatcgagcg tcttcttctt
      241 cgccttcatg atgttgggca gcgtcgcata gcgcggcgtg ttgagccgga gatcggtggt
      301 caccaccgcc ggcagatcga cctcgatcgt ctcaagtccg ccgtcgatct cacgggtcac
      361 gagcgccttg cctgcttcga cgctcagctt cgatgcaaag gtcgcctgcg gccagccgag
      421 caacgccgcg agcatctggc cgacctgatt cgcgtcgtca tcgatagcct gcttgccgag
      481 catcacgagt tgcggctgct ccttgtccac cagcgccttg agcagcttcg cgaccgcaag
      541 cggctgcaac tcggcgtcgg tctggacgag gattgcccgg tcagcgcctg tcgccatcgc
      601 cgtgcgcagc gtttcctggc aaccctgcac gccgcaagac acgacgacca gctccgacgc
      661 cgtgccggct tccttcaaac gcaccgcctt ttccacgctg atttcgtcga aggggttcat
      721 agacagcttc acattcgcga tgtcaacagc gctgccatcg gcctttacgc ggactctcac
      781 gttcgcgtcg acgacgcgtt tgacaggaac cagtactttc attgccttct ccgtttcgat
      841 aagggactct gtcgcgccgg cgatgtgaac cgatcgccag aggcttggtt ttgttcgtac
      901 gggatacgcg ccaccagccc gggcttgtgc accgcaatac gatcagatgc gggtagacac
      961 gtctgcagcc tcaaggtggt tgcgcgtatc atttcctgag cagagcaccc caacaggccg
     1021 cgcccgccga ggggcgactc ccaatgaccg gtcgtcgtgc cgcaccgttg tccaactgtg
     1081 gaactgcatg tctcctcact ggaatgaatg gtgtctgaac gtggcgccgc gcaaaatccc
     1141 ccttacaggg gagcgcgatc gcgaggacgg aaaatggcag tcagggtcaa cccgaacgcc
     1201 tggagcaact gatgcacgtg atagaagcac cacccccgca caggccgcct gtcttcctcg
     1261 caacgaaggt cttcccgccg cgcctgcccg ccggattgat cgatcggcca cggctcgtcg
     1321 cgctggccgg gaaagcagaa tacaaacggc tgaccgtcat caaggcgcct gccggttttg
     1381 gcaagacatc gcttgcgctc acgtggctca acgggctgaa tgcaagcggc gcctatgtcg
     1441 cgtggctgtc gctcgacacg gaggacgacg aacccgcgcg cttcttccat catctggcgc
     1501 gggcgttgcg caacgcctgc gccagcgtcg gcgcgtccgc
//
LOCUS       DATGBK010000626         2020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_169954, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000626 DATGBK010000000
VERSION     DATGBK010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169954"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1063
                     /gene="tilS"
                     /locus_tag="VKJ77_08880"
     CDS             <1..1063
                     /gene="tilS"
                     /locus_tag="VKJ77_08880"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006408211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HMC45423.1"
                     /translation="SALWLAHHADDQAETVLLQLLRGAGVAGLAAMAPQRADGASTPR
                     VRPLLHLLRAQLEHYAHERDLRWIDDESNADTRYARNALRHDVLPALAVHFPGFRDAL
                     ARTASHAASAQRLLDELARIDMTSAQGDDEGALTLSAVLAFDDERAINLLRYWMRSLG
                     LQAASAARIGEVLRQLRDAAVSRDGHALRIDHAGFCLRAYRDAIFWEKGDSADPADLD
                     DGANPARMASVLNWDGESIWRLPHWRGTFVFKPAARGDEDAVSEATLRAAPLCARSRA
                     GGERLRLSEDGPGRTLKNLFQERGVPGWKRDVPLVFLGETLLFVPSIGVNRACAEVSG
                     EGGELRYRRIEWRPDLVIA"
     gene            1541..>2020
                     /locus_tag="VKJ77_08885"
     CDS             1541..>2020
                     /locus_tag="VKJ77_08885"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006408212.1"
                     /note="catalyzes the formation of 4-phospho-L-aspartate
                     from L-aspartate and ATP, in Bacillus, lysine sensitive;
                     regulated by response to starvation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HMC45424.1"
                     /translation="MALIVHKYGGTSMGSVERIKNVAKRVAKWHRAGHKMVVVPSAMS
                     GETNRLLGLAREITANPDPRELDMIASTGEQVSVGLLAIALQAEGLEAVSYAGWQVPI
                     KTDSAFTKARISDIDGTRVLADLDAGKVVVVTGFQGVDPDGHIATLGRGGSDTSAVAI
                     "
BASE COUNT          342 a          614 c          657 g          407 t
ORIGIN      
        1 aagcgccctt tggctcgcgc atcatgccga cgatcaggcg gaaaccgtgt tgctgcaatt
       61 gctgcgcggc gcgggcgtgg ccgggcttgc cgccatggcg ccgcaacgtg ccgacggcgc
      121 ctccacgccg cgcgtgcggc cgttattgca tctgttgcgt gctcaactcg agcattacgc
      181 gcatgagcgc gatctgcgct ggatcgacga cgaatcgaac gccgataccc gctatgcccg
      241 caacgcgctg cgtcatgacg tgctacctgc actcgctgtg catttccccg gtttccgcga
      301 tgcgctcgcg cggaccgcgt cgcatgcggc atcggcgcaa aggttgctcg atgaactcgc
      361 gcgcatcgat atgacttcgg cgcaaggtga cgatgagggt gcgctgacct tgtcagcggt
      421 actcgctttc gacgatgaac gcgcgatcaa cttgctgcgc tactggatgc gttcgcttgg
      481 tctgcaggcg gcatcggcgg cgcgtattgg cgaggtgctg cggcaattgc gcgacgctgc
      541 cgtttcccgg gacggccacg cgttgcgtat cgatcacgcc gggttttgct tgcgggcgta
      601 tcgcgatgcg attttttggg aaaagggcga cagcgcggat cccgccgatc tcgacgatgg
      661 cgcaaatccc gcgcgtatgg cgagcgtgtt gaactgggac ggtgaaagta tctggcgcct
      721 gccgcattgg cgcgggacgt tcgtgttcaa acccgcggcg cggggcgatg aggacgcggt
      781 gtccgaagcc acgctgcgcg ccgcgccgct ttgcgcgcgt tcgcgcgcgg gtggcgagcg
      841 cttgcgcttg agtgaggatg gccccggccg gaccctgaaa aacctgtttc aggagcgcgg
      901 cgtacctggt tggaaacgcg acgtcccgct ggtgtttctc ggcgaaacct tgctgttcgt
      961 gccgtccatt ggcgtcaatc gggcgtgcgc cgaagtcagc ggtgagggcg gcgagctcag
     1021 gtataggcgg atcgagtggc ggccggacct ggttattgcc tgaacggcta gccggtgcgc
     1081 tcacgcgctg tatctgcggt ggtcctggcg cgcggaactc aatctgcccc gatttttaag
     1141 tgtttcatgc gcgggaacaa atcccggtca acttttcttg gcagacgcct gaaaacggcc
     1201 tgcgaacgcc ccgcaaacgc gtcgaatcgc ccgttccggc ttgtgtttta ggcgtcgatc
     1261 gggtacgttt accggtttcc cgcaacgctt ttcaagcagc ttttccgtcc agaagacgcg
     1321 tttttagccg ccagaattgc attttgcgcg cgagccaacc ttgcgcgtgc ggctaccgcg
     1381 cttcgtcgtc acgcttaagt cgtcgatcgc accgatccag ggtttgcttg tgtttcttca
     1441 agccggcttc tgatgcaata cgtgaaacac gtgcagtcgt gcagtacgcg gcgcatcaaa
     1501 cggcgcgcca gcgcggcttt ttctcctgtt caaaacgaca atggcactca tcgtacataa
     1561 atacggcggc acttcgatgg gctcggtcga gcgcatcaag aacgtcgcca agcgcgtcgc
     1621 gaaatggcac agagccggcc acaagatggt cgtcgtcccg tcggccatgt ccggcgaaac
     1681 gaaccgcctg ctcggcctcg cgcgcgaaat caccgcaaat cctgacccgc gcgaacttga
     1741 catgatcgct tccaccggcg aacaagtcag cgtcggcctg ctcgcgattg cgttgcaagc
     1801 ggaagggctg gaggcggtca gctatgccgg ctggcaagtg ccgatcaaga ctgacagcgc
     1861 gttcacgaaa gcacgcatca gcgacatcga cggcacgcgt gtgctcgccg atctcgacgc
     1921 aggcaaggtc gtggtggtca cgggcttcca gggcgtcgat ccggacgggc atattgccac
     1981 gctgggacgc ggtggttcgg acacatcggc ggtcgcgatt
//
LOCUS       DATGBK010000627         2802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_308636, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000627 DATGBK010000000
VERSION     DATGBK010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2802
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308636"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..975)
                     /locus_tag="VKJ77_08890"
     CDS             complement(<1..975)
                     /locus_tag="VKJ77_08890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HMC45425.1"
                     /translation="MSTPLATATSSPQPPGKHPAPPCTLVIFGAAGDLTKRLLMPALY
                     NLSSDGLLDDKMKIIGVNHGELETSVWRDQLTESLKQFAADKAGAFHTSKLDERAWNW
                     VADRLQYVAGEFETDDVFNKLKQTLGDSGNVIFYLAVSSRFFKPIVERLGRVGLLKES
                     DQGFRRVVIEKPFGHDYASAKDLNESILKFAGENQIYRIDHFLGKDTVQSILAVRFAN
                     ALFEPIFRREYIDHVQITAAETIGVEARGGFYEQTGAFRDMLPNHLFQLLGMVAMEPP
                     NSFDAEAVRDKKAEIFDAIQPLKPNDVVLGQYEKSATMAGYREEADVAA"
     gene            1191..2069
                     /locus_tag="VKJ77_08895"
     CDS             1191..2069
                     /locus_tag="VKJ77_08895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylamine N-acetyltransferase"
                     /protein_id="HMC45426.1"
                     /translation="MNQTLSPAQLAAYFDRIDYSGPQQATSETLHALHRLHPQVIPFE
                     NLDPLLGRTPHLDLASVFAKLVSARRGGYCYEHNLLFRAVLDTLGFETTGLAARVLWN
                     DPAAMMPRTHMMLLVETPDNTWLADVGFGSMTLSAPLLFDTGREQATPHEPFRLDLIE
                     RGDFLLQVKLGDTWRPIYRFDLEPQFPADYAMANHYVSTYPESIFVDHLIVARVMPGQ
                     RQTLFDTTLTQRGDTESKRELTNAEGLRGVLQDTFGLVLADSDSDTRLETEAGGLDAV
                     LERIVRLSTSIMSTAS"
     gene            2078..>2802
                     /locus_tag="VKJ77_08900"
     CDS             2078..>2802
                     /locus_tag="VKJ77_08900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HMC45427.1"
                     /translation="MRKTAKRAHESSRTPVKNAVLESRLPRWRSTLLVMLMFGAFASL
                     AARALWVQVVNQDFYIGEGQKRYQRTLELSATRGRIVDRNGAMLAVSLATYAIWATPS
                     RFDRETIPAIARLIDMPEKELARRLDGARSFVLLKRQVDPDTATRIAETGLAGVTLVA
                     DTKRFYPEGESAAHVVGFTDNEDKGQEGIELAANDRLTGEHGQREVIRDRLGRVVSEI
                     GEVALPENGETIHLTIDRRIQQLA"
BASE COUNT          554 a          871 c          824 g          553 t
ORIGIN      
        1 cgccgcgaca tccgcttctt cccgataccc cgccatggtc gcggattttt cgtactgccc
       61 gagcaccacg tcattaggtt tcagcggctg gattgcgtcg aagatctcgg ctttcttgtc
      121 gcgcacggct tccgcatcga atgaattcgg cggttccatg gcgaccatgc cgagcagctg
      181 gaacaggtga ttcgggagca tgtcgcggaa ggcgcccgtc tgctcgtaga acccgccacg
      241 cgcttccacg ccaatggttt ccgccgccgt gatctgcacg tgatcgatat attcgcgccg
      301 gaaaatgggc tcgaacaacg cattcgcgaa acgcaccgcg aggatgctct gcaccgtgtc
      361 cttgcccaga aaatgatcga tacgataaat ctgattctcg ccggcgaact tgagaatgct
      421 ctcgttgaga tccttcgccg atgcgtagtc gtgcccgaag ggcttttcga ttaccacgcg
      481 ccggaagccc tgatcacttt ccttcagcaa tcccactcga ccgagccgct cgacgatcgg
      541 cttgaagaag cgcgaactga cagcgagata aaaaatgaca tttccactgt cacccagtgt
      601 ctgcttgagc ttgttaaata cgtcatcggt ttcgaactcg cccgccacat actgcaggcg
      661 atccgcgacc cagttccacg cgcgttcgtc gagtttggag gtatgaaaag cgcccgcttt
      721 gtcggcggcg aattgtttca gagactcagt caattggtcg cgccagacgc tcgtctcgag
      781 ctcgccgtgg ttcacgccaa tgatcttcat cttgtcgtct agcaggccat cggacgacag
      841 gttgtacagc gccggcatca gcagccgttt ggtcaggtcc ccggctgcac cgaagatgac
      901 gagcgtgcac ggcggggcgg gatgcttgcc cggaggctgc ggggaggaag ttgcggtagc
      961 gagtggggtc gacatagggt tctttaaaag aagagttgag cgcactgctt aataaagacc
     1021 atgttgggca cgtcacagtt caaaatcctg cccaaacggt ctgcttctgc gttttcgact
     1081 gatgcgtagc gtatgcaata tgtaatcggt gcccggggtg tgccgtagaa tgtcggcacc
     1141 tcgcggcggc tcgcccggcc tcgtttccat tacccgtgca ggagttccac atgaatcaga
     1201 cactctcccc ggcgcaactt gccgcgtatt tcgatcgcat tgactatagc ggccctcagc
     1261 aggctacatc agagacgctg cacgcgctgc acaggctgca tcctcaagtc atcccgttcg
     1321 aaaacctcga cccgctgctc gggcgcacac cgcacctcga tctcgcgtcc gtgttcgcga
     1381 agctcgtgag cgcgcgacgc ggcgggtatt gctatgaaca caacctgctg tttcgcgccg
     1441 tgctcgacac gctcggcttc gagaccacgg ggctcgctgc gcgcgtactg tggaacgacc
     1501 cggctgccat gatgccgcgc acccacatga tgctgctggt cgaaacaccc gacaacacct
     1561 ggcttgcgga cgtcggcttc ggcagcatga cgctcagcgc cccgctgctg ttcgacacgg
     1621 gccgcgaaca ggcgacgccg cacgagccgt ttcgtctcga cctgatcgag cgcggcgatt
     1681 tcctgctgca agtgaagctc ggcgatacct ggaggccaat ctaccgtttc gacctcgaac
     1741 cgcaatttcc cgccgactac gccatggcga accactacgt gtcgacgtat cccgagtcga
     1801 tcttcgtgga ccacctgatc gtggcgcggg tcatgcccgg acaacggcag accttgttcg
     1861 acacgaccct gacccagcgt ggcgacacag aatccaaacg cgagctcacg aacgctgaag
     1921 ggttgcgcgg cgtgctgcaa gacacgttcg ggctcgtgct ggccgacagc gattccgaca
     1981 cccgccttga aaccgaagcc ggcggactcg atgccgtgct cgagcgcatc gtccggttgt
     2041 ccacgtccat catgtctact gcgtcctgat cgtcacgatg cgtaaaaccg ccaagcgagc
     2101 ccatgaatct tctcggacac ccgtgaaaaa cgcagtgctc gaaagccggc tgcctcggtg
     2161 gcgctccaca ctgctcgtga tgctgatgtt cggcgcgttc gcttcgctag ccgcgcgtgc
     2221 gttgtgggtg caggtcgtga atcaggattt ttatatcggc gagggacaaa agcgctatca
     2281 acgcacactg gaactcagcg cgacgcgagg gcgcattgtc gaccgcaacg gcgcgatgct
     2341 ggccgtgagc cttgcgacct atgcgatctg ggcgacgccc tcgcgctttg atcgcgagac
     2401 aataccggca atcgctcgcc tgatcgatat gcccgaaaag gaactggcgc gccgcctcga
     2461 cggtgcgcgc tcgttcgtgt tgctaaagcg gcaagtcgat cctgacacag ccacgcgcat
     2521 cgcggaaacg gggctggcag gcgtgacgct ggtcgccgac acgaaacgct tctatcccga
     2581 aggagaatcg gcggctcacg tcgtcggctt caccgataac gaagacaagg gccaggaagg
     2641 cattgaactc gcggcaaatg accggctgac cggcgagcac ggccagcgcg aagtgatccg
     2701 tgacaggctg gggcgcgtgg tgtcggagat cggcgaagtg gcgttgccgg agaatggcga
     2761 gaccattcat ctgactatcg accgccgtat ccagcagctc gc
//
LOCUS       DATGBK010000628         4389 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_169968, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000628 DATGBK010000000
VERSION     DATGBK010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4389
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169968"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VKJ77_08905"
     CDS             complement(<1..386)
                     /locus_tag="VKJ77_08905"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC45428.1"
                     /translation="MASNIASGTSRQRRILTVGDHPDTSAEIAQTLRERGFEVDLVSS
                     GCEALRAARATAYDAMTLDRKLPDADGIMVVRLLREAEIDLPVLVISALSDVDEKVRG
                     LRSGGDDYLTKPYHPDELVVRLEVMIR"
     gene            1178..2653
                     /gene="zwf"
                     /locus_tag="VKJ77_08910"
     CDS             1178..2653
                     /gene="zwf"
                     /locus_tag="VKJ77_08910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HMC45429.1"
                     /translation="MTTQTHSAAPDLPVDMIIYGGGGDLSARKLLPALYMAHLHCNLP
                     PKTRIIAIGRRDWSREQYVQFVEEQSKPFVDKKALDPQSWDSFLALFDYVRINIDAAS
                     DYLRLAEIARKDVCRVFYLATSPDLFTTICDNLAAAGLVDSNSRVVLEKPLGHDLASA
                     QAINASVGRHFAEAQIYRIDHYLGKETVQNLMVLRFGNAIFGPLWQAPYIKSVQITVA
                     ETVGVGSRAGFYDQTGALRDMVQNHLLQLLCIVAMEPPVSLDPDAVRDEKLKVLRSLR
                     KMTVADIARDTVRGQYSPGAIGGEPVKGYMEEDNVPAESRAETFVAIRAHINNWRWAN
                     VPFFLRTGKRLQKKQSEIVIDFADLPFSIIPSGPRNYGNRLIIQLQPEESIQLQMLAK
                     EPGSGMHMLPVNLNLDLQQAFTERRAEAYERLLIDVMRGRLTHFMRRDELEAAWAWVE
                     PILDGWKELNDRPRTYTAGTFGPAASSALMARENMAWAEEA"
     gene            complement(2709..4064)
                     /locus_tag="VKJ77_08915"
     CDS             complement(2709..4064)
                     /locus_tag="VKJ77_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase N-terminal
                     domain-containing protein"
                     /protein_id="HMC45430.1"
                     /translation="MTNSLRLRLLLWLLLPLTVYVLAAGYMAREGAQKTASLIQDNAL
                     LASARVMAGDVKWDDSFLHADISPSAIEILSSPYGDRVFFRIRVIDGPVIAGTSDLEQ
                     VEPASSPGWYDTEIDGQPVRAVSIIRPMYDSGESKRILVSVGRTELERDALATELWRP
                     QLLHFAEIIAIAIVLVCVGLTFELRHLMALTNDVRDRAPNELVPLRSEHLQSELRPIV
                     DAINHCIARIERQTAMQRRFISHAAHQLRTPLTLLGAQLQYARRHDDLATVKETLSAM
                     HKSNGALVSLTNQLLLLAQAETADYSHFEGERVDLREVVTTVIEELALLAQRRGIELA
                     AQLADGAIVLGNARLLSVLVFNLVDNAIRYTPASGHVTLLIERREKTIVLAVTDDGPG
                     IPADVRDRVFEPFFRASGEEGSGLGLAIVREIVRAHRASISLDDGPGGKGLAAEVRFS
                     L"
     gene            complement(4054..>4389)
                     /locus_tag="VKJ77_08920"
     CDS             complement(4054..>4389)
                     /locus_tag="VKJ77_08920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015876931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HMC45431.1"
                     /translation="LVRRQLPSRSNSTRCGDLSYDIDRRQFSVAGEVLSLTPREHAVL
                     ETLILKAKKTVSKPMLADSLGSSTTHTSEDAIEIYVSRLRKKLEKSTATIITLRGLGY
                     LLQASSDDE"
BASE COUNT          924 a         1339 c         1241 g          885 t
ORIGIN      
        1 cgaatcatga cttcaagacg gaccaccagt tcgtccgggt gatagggttt cgtcagatag
       61 tcgtcgccgc ccgagcgcaa gccacgcact ttttcatcga cgtcggacaa cgcactgatc
      121 accaggacgg gcaggtcgat ctcggcctcc ctcagcaacc ggaccaccat gattccgtct
      181 gcgtcgggca gctttcgatc gagcgtcatg gcgtcgtaag cggtggcacg cgctgcgcgc
      241 aacgcctcgc acccgctcga aacgagatcg acctcgaagc cgcgttcacg cagcgtttgg
      301 gcgatctccg cggacgtgtc aggatggtcc ccgacagtca ggatgcgccg ctgccttgag
      361 gtcccactcg caatgttgct agccaatgtt ttgctcgtta taagttcgaa ggtctctttc
      421 tattttaacg aatcaataat atgctgacga tgaaaactcc ctcactattg cactcacaat
      481 cgattcataa atagcgccaa tcctcaccgc atcttaagaa tattccagat agctaaatca
      541 actttaattg ttagatattt ttcctgaaaa ccatagcggg ccggacagcg cgtcagcggg
      601 attggcacac cggatcatca ttaaacgttc cagcgccccg tttcattatc cgaggcttta
      661 cctgacatgg attatcgaat tttaattaaa aatctattca tgagaattca acatggaggt
      721 ttaaaacaag caagaccagt ttttaccaag ctgcggattg gcgattgcct gcgcccttct
      781 tgccagcaga tccgtgccgc gtcgattgga atgcagatgc gcctattgca atctgcaggc
      841 ggaattgcga agcgatccgc aaggccgcac ctccccggtg ctccaagtca ttaaacgttc
      901 attcaactca tccagtgtcg tgccggcccg cctggcgctg tatcggcgca gcaccggccg
      961 cgcgcttaca ctaaagttac atggataccg ctccatcgct tcccgaccgg tcggacgttt
     1021 tttctcccct attctgatga tcgcgaacgg cacgtcgctc gcatgcgcca accatgcttg
     1081 tttaaagcgt aactggtata acgacatact tagcgtcgta cacggcccgc tccgcggagc
     1141 gcaattctga ctgcaaactc gcgattcctt aagcaccatg accactcaaa cccattcagc
     1201 cgcgcccgat cttcctgtcg acatgatcat ctacggcggc ggcggcgacc tgtccgcacg
     1261 caagctcctg cccgcccttt acatggcgca tttgcactgc aacctgcccc cgaaaacacg
     1321 cattattgcg atcggccgac gcgactggtc gcgcgagcaa tacgtgcagt tcgtggaaga
     1381 gcaatcgaaa cctttcgtcg acaagaaagc actcgatccg caatcctggg acagtttcct
     1441 ggcgctcttc gactacgtgc gcatcaacat tgatgcggcg agcgactatc tgcggctagc
     1501 ggaaattgcg cgcaaggacg tatgccgcgt gttttatctc gcgacgtcgc cggacctgtt
     1561 cacgaccatc tgcgacaacc tcgcggccgc cggcctggtc gacagcaact cgcgcgtcgt
     1621 gctggaaaaa ccgctcggtc atgatctcgc ctcggcgcaa gcaatcaatg cttctgtcgg
     1681 ccgtcatttc gccgaagcgc agatctatcg catcgatcat tatctcggca aggaaacggt
     1741 gcagaacctg atggtgctgc gtttcggcaa cgcgatcttc ggaccgctat ggcaggcgcc
     1801 gtacatcaag agcgtgcaga tcacggtggc ggaaacagtg ggcgtaggca gccgtgccgg
     1861 cttctacgac cagaccggcg cgctacgcga catggtgcag aaccatctgt tgcaactgct
     1921 gtgcatcgtg gccatggaac cgcccgtgtc gcttgatccc gatgccgtac gcgatgaaaa
     1981 actcaaggtg ctgcgttcgc ttcgcaagat gacggtcgcc gatattgccc gcgataccgt
     2041 gcgtggccag tacagtccgg gcgcgattgg cggcgagccg gtcaagggat acatggaaga
     2101 ggacaacgtg ccggcggaga gccgtgccga gaccttcgtc gccatccgcg cgcatatcaa
     2161 caactggcgc tgggcgaacg tgccgttctt cctgcgtacg ggcaagcgtt tgcagaagaa
     2221 gcaatcggag atcgtgatcg acttcgccga cctgccgttc tctatcattc ctagcggacc
     2281 gcgcaactat ggcaaccggc tgatcatcca gttgcaaccg gaagaatcca tccagttgca
     2341 gatgctcgcg aaggagccgg gaagtggcat gcatatgctg ccggtgaacc tgaatctgga
     2401 tttgcagcaa gcattcaccg aacgtcgcgc ggaagcgtac gagcggctgt tgatcgatgt
     2461 gatgcgtggt cgcctgacac atttcatgcg tcgcgatgaa ctcgaagcgg cgtgggcgtg
     2521 ggtcgaaccg atcctggacg gctggaagga attgaacgac cgtccgcgta cttatacggc
     2581 gggcacgttc ggacctgcag cctcttcagc gctgatggcg cgggagaaca tggcgtgggc
     2641 tgaagaggcc tgaagtagtt gctcactcgc ataggttcat gggtgcgagt gacatggaag
     2701 ccatcgctct aaagcgaaaa ccggacctcg gccgcaagac ccttgccgcc ggggccgtca
     2761 tcaagactga tgcttgcccg gtgcgcccgc acgatctcac gcactatcgc aaggcctagc
     2821 ccgctgccct cctcccccga tgccctgaag aacggctcga acacacgatc acggacatcg
     2881 gctggaatgc cgggaccgtc gtcggtgacg gcaagcacga tggtcttctc gcgccgctcg
     2941 atcaacaacg tcacgtgacc tgacgcgggg gtgtatcgaa tagcgttatc gaccaggttg
     3001 aagaccagca ccgacaataa acgcgcattc cccaacacga tcgcaccgtc ggcgagctgc
     3061 gcggccagct cgatcccgcg acgctgcgcc agcaaagcca gctcttcaat cacggttgtc
     3121 acgacctcgc gcaaatcgac gcgctcgcct tcgaaatggc tgtaatcagc ggtctcggcc
     3181 tgcgctagca acagcaattg gttggtcagg gacaccagcg cgccattgct cttgtgcatg
     3241 gcggacaggg tctctttgac ggtggcaagg tcgtcgtggc gtcgggcgta ctgcagttgc
     3301 gcgccgagca acgtcagcgg cgttctcaac tgatgcgcgg catgcgaaat gaaacgccgc
     3361 tgcatcgcgg tctgccgttc aatccgcgca atgcagtggt tgatcgcatc gacgataggc
     3421 cgcaactcgc tctgaagatg ctccgagcgc agcggcacga gttcgttcgg cgcgcggtcg
     3481 cgaacgtcat tggtcagcgc catcaggtgc cgcaactcga acgtcaggcc gacacacacc
     3541 agcacgattg caatcgcaat gatctccgcg aaatgcagca gttgcggccg ccataactcg
     3601 gtcgccaatg catcgcgctc cagttccgtg cggcctaccg acaccaggat gcgcttgctt
     3661 tcgccggagt cgtacatcgg ccggatgatg gaaactgccc gcaccggctg accgtcgatc
     3721 tcggtgtcat accagccggg tgaactggca ggctcgacct gttcgaggtc cgacgtgccc
     3781 gcaatcaccg gcccgtcgat cacgcggata cgaaaaaata cccggtcgcc atatggcgaa
     3841 ctcaagatct cgatagcgct tggggaaata tccgcatgca ggaaactgtc gtcccacttg
     3901 acgtcgccag ccatcacgcg ggcggacgcg agcagcgcgt tgtcctggat caggctcgcg
     3961 gttttctgcg cgccttcacg ggccatgtaa cccgccgcga gtacatagac cgtcagcggc
     4021 agcagcagcc acagcagaag ccgcaggcgc aggctattcg tcatcgctgc tggcttgcaa
     4081 caggtaaccc aggcctcgaa gcgtaatgat ggtggcggtg cttttctcga gcttcttgcg
     4141 cagccgcgag acgtagatct cgatggcgtc ttcgctcgtg tgggtagtcg aactgccgag
     4201 cgagtcggcc agcatcggct tggagaccgt cttcttggcc ttgaggatca aggtctcgag
     4261 tacggcatgc tctctcggcg tcaggctcag cacttcgcct gctaccgaaa attgccgccg
     4321 gtcgatatcg taggaaagat cgccgcagcg cgtgctgttc gagcgcgagg gcaactgtcg
     4381 ccgaaccag
//
LOCUS       DATGBK010000629         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_123533, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000629 DATGBK010000000
VERSION     DATGBK010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123533"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..683)
                     /locus_tag="VKJ77_08925"
     CDS             complement(<1..683)
                     /locus_tag="VKJ77_08925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011351132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HMC45432.1"
                     /translation="MNTTRSLPVLRTLCGIAVLAAAAALPLNSEAATLTLYNAQHEQV
                     VAALAKDFEKQTGVSVKVRNGEGPAMAAQLVAEGSASPADVYFTENSPELMLLDEKGL
                     LAKTDASTLSTIPSRYNSPQGDWVGVLARENVLVYNTKKIDVAQLPASLMDLAKPEWK
                     GKVGIAPSDGDFLPVVSAVIAMKGEADALAWLKGLKKNSQIFDDDEGVVAAVNRGGVA
                     TGVVNNYYWA"
     gene            complement(751..>2001)
                     /gene="efeB"
                     /locus_tag="VKJ77_08930"
     CDS             complement(751..>2001)
                     /gene="efeB"
                     /locus_tag="VKJ77_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007743110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0033212 - iron import into cell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter
                     deferrochelatase/peroxidase subunit"
                     /protein_id="HMC45433.1"
                     /translation="PRRRFLKAGVAAGAALGAGSVAHAATKAQFKQPIDPMLMVEPFF
                     GEHQAGIVTPQQSHTYVASLDLTTDKREEVIGLLKEWTDAAARMSRGDTAKPLPADDK
                     AAPDSGDILGLGAAGLTITFGFGPGLFTHEGKDRYGLEKRRPAALVDLPRFNGDQLLP
                     QKTGGDILIQACANDAQVAFHAVRQLARMGYGIVAMRWAQAGFLSGPRGQTPRNLMGF
                     KDGTNNPSTAKPALMNQFVWANAPDAPWMNGGTYTVVRRIRITLEHWDTMERGFQEQV
                     MGREKYSGAPIGKKNEFDALDLDAADKDGNQVIPENSHVRLSNQATNNGAQILRRSYS
                     YNDGTDFYIERWPPWRQETEYDAGLIFVAHQSDPRSGFIPINERLAKFDMMNQFTTHV
                     GSAVFACPPGVRPGSFIGAGLFEA"
BASE COUNT          347 a          646 c          595 g          413 t
ORIGIN      
        1 gcccagtagt agttgttcac tacgcccgtc gccacgccgc cgcgattcac tgccgccacc
       61 acaccttcgt cgtcatcgaa gatttgcgaa tttttcttca ggcccttgag ccatgccagc
      121 gcatccgctt cgcccttcat cgcgatcacc gcgctcacca ccggcaggaa atcgccatcg
      181 ctcggcgcaa tgccgacctt gcctttccac tccggcttgg ccagatccat cagcgacgcc
      241 ggcagttgcg ccacatcgat cttcttcgtg ttgtagacca gcacgttctc acgcgcgagc
      301 acgccgaccc agtcgccctg gggcgagttg tagcgcgacg ggatagtcga gagcgtggat
      361 gcatcggttt tcgcgagcag gcctttctcg tccagcaaca tcagttcggg tgaattctcg
      421 gtgaagtaga catcggcggg agaagccgat ccttccgcga ccagttgcgc cgccatggcc
      481 gggccttcgc cgttgcggac cttcaccgac acaccggttt gcttctcgaa gtccttcgcc
      541 agcgcggcca cgacctgctc gtgttgcgcg ttgtacaagg tcagcgtggc cgcttccgag
      601 ttcagcggca acgccgctgc ggcagccagc accgcgatgc cgcaaagcgt gcgcagcacg
      661 ggcagggagc gtgtggtgtt cattgcagtc attccttttg tcgtggtgcg ccggcttgtc
      721 gccggcgtgt gctttattgc ttcaataaat tcaagcttca aacagccccg cgccgataaa
      781 cgaacccggc cgcacgcccg gcgggcacgc gaacaccgcg ctgcccacat gcgtggtgaa
      841 ctgattcatc atgtcgaact tcgccagccg ttcattgatc ggaatgaaac cgctgcgcgg
      901 atcgctttga tgcgcgacga agatcaaccc cgcgtcatac tcggtttcct gacgccatgg
      961 cggccaccgc tcgatataaa aatcggtacc gtcgttatag gaatatgaac ggcgcaggat
     1021 ctgcgcaccg ttgttcgttg cctggttcga caaacgcacg tgcgagtttt ccgggatcac
     1081 ctggttgccg tctttatcgg cggcatcgag gtccagcgcg tcgaattcgt tcttcttgcc
     1141 gattggcgcg ccgctgtatt tctcgcggcc catcacctgt tcctggaaac cacgttccat
     1201 ggtgtcccag tgttccagcg tgatgcggat acggcgcacg acagtgtacg tgccgccgtt
     1261 catccacggc gcgtcaggcg cgttggccca cacgaactga ttcatcagcg ccggtttcgc
     1321 ggtcgacgga ttgttggtgc cgtccttgaa acccatcagg ttacgcggcg tctgtccacg
     1381 cggaccggag agaaaacccg cctgagccca acgcatggcc acgatgccgt agcccatgcg
     1441 cgcgagttga cgcactgcgt ggaatgcgac ttgagcgtcg ttggcgcagg cttgaatcag
     1501 gatgtcgccg ccggttttct gcggcagcaa ttggtcgccg ttgaagcgcg gcaagtcaac
     1561 cagcgcggcg ggccggcgtt tctccagacc gtagcgatcc ttgccttcgt gcgtgaacaa
     1621 tcccgggcca aaaccgaacg tgatcgtgag gcccgcggcg ccgaggccga ggatatcgcc
     1681 ggaatcgggt gcggctttgt cgtcagcggg caaaggcttg gccgtgtcgc cacgcgacat
     1741 gcgtgcggca gcatccgtcc actctttcag aagaccgatc acttcttcgc gtttgtcggt
     1801 cgtgagatcg agcgacgcca cgtacgtatg gctctgctgc ggtgtcacga tacccgcctg
     1861 atgctcgccg aagaacggct cgaccatgag catcgggtcg atgggctgct tgaactgcgc
     1921 cttggtcgcg gcgtgcgcga ctgaacccgc gcctaacgcc gcgcccgcgg caacgcccgc
     1981 tttcagaaaa cggcggcgcg g
//
LOCUS       DATGBK010000630         1839 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_100357, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000630 DATGBK010000000
VERSION     DATGBK010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100357"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VKJ77_08935"
     CDS             complement(<1..262)
                     /locus_tag="VKJ77_08935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004196422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HMC45434.1"
                     /translation="MSAELLSVRPAESDTTLVLKLSNPGARNALHPDMYTAGIEAMNT
                     AERDTSVRAIVLTGADNFFCAGGNLNRLLENRAKDPSVQAASI"
     gene            complement(259..1800)
                     /locus_tag="VKJ77_08940"
     CDS             complement(259..1800)
                     /locus_tag="VKJ77_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HMC45435.1"
                     /translation="MSFRDTEIRTLGLVGSGAMGRGIAQIAALGGLNVRLYDTNQQAI
                     AAAREYLADTLNKLAAKGKLNEADAHAALARIHAAGAIGDLADCDVVVEAIVEKLDVK
                     RELFRELEGVVGENCILASNTSSLSITAIAAGCAKPERVVGLHFFNPVPLMKVVEVID
                     GLRGDPAAGDALMALGRQMGHTAVRAKDMPGFIVNHAGRGMNTEGLRIASEGVASFAD
                     IDRIMREQAGFRLGPFELLDLTALDVSHPVMESIYHQFYEEPRFTPSPITGTRLAGGL
                     IGRKVGEGFYKYVDGKQQTPEEAPAPTTLPRRVWVSRASAHAREEVFRLIAKMETAVT
                     IDTGGSPAPDSLIIVTPLGHDATTAVVAEKLDASRTVAIDTLFPLANAARRTIMTTPA
                     TTAEFRDAAHALFAFDGVPVTVIRDSTGFVAQRVVATIVNIGCDIAQQRIASPADIDL
                     AVTLGLGYPRGPLALGDALGANTILTILRNMQAVLGDPRYRPSPWLARRAQLGLSLTF
                     DEAAA"
BASE COUNT          332 a          580 c          587 g          340 t
ORIGIN      
        1 cgatactcgc ggcctgcacc gagggatcct tcgcgcggtt ttccagcagc cggttcaggt
       61 tgccgccggc gcaaaagaag ttgtcggcac cggtaagcac gattgcgcgc accgatgtat
      121 cccgttcagc cgtattcatc gcttcaatgc cggcggtgta catgtccggg tgcagcgcgt
      181 tgcgtgcgcc cggattggac agcttgagaa cgagcgtggt gtcgctttcg gcggggcgaa
      241 cggagagcag ttcggcgctc atgctgcggc ctcgtcgaag gtgagcgaca agccgagctg
      301 cgcacggcgc gcgagccagg gcgacggacg ataacgcgga tcgcccagca cggcctgcat
      361 gttgcgcagg atagtcagga tggtgttcgc gccgagcgca tcgcctaacg caagcgggcc
      421 gcgcgggtaa cccaggccga gcgtgacggc gagatcgata tcggcgggac tggcaatgcg
      481 ttgctgcgcg atatcgcaac caatgttgac gatggtcgcc accacgcgct gggcaacaaa
      541 cccggtcgag tcgcggatca ccgtcactgg gacgccatcg aatgcgaaga gcgcgtgcgc
      601 ggcgtcgcgg aactcggcgg tcgtggcggg cgtggtcatg atggtgcggc gtgcggcatt
      661 ggcgagcggg aacaaggtgt cgatggctac cgtgcgcgac gcgtccagtt tctccgcaac
      721 gactgcggtc gtggcatcgt gaccgagcgg cgtgacaata atcagcgaat caggcgccgg
      781 gctgccaccg gtatcgatag tgaccgccgt ttccatcttc gcgatcagtc ggaacacttc
      841 ttcacgcgca tgggcagatg cccggctgac ccatacgcga cgcggcagcg tcgtcggcgc
      901 gggtgcttct tcgggagttt gctgcttgcc gtccacgtat ttataaaacc cttcgcccac
      961 cttgcgtccg atcaacccac cggcgagccg cgtgcccgtg ataggcgatg gtgtaaagcg
     1021 cggttcctca tagaactggt gatagatcga ctccatcacc ggatgcgaca cgtcgagcgc
     1081 cgtcagatcc agcaactcga acggcccgag ccggaagccg gcttgttcgc gcatgatccg
     1141 gtcgatatcg gcgaaactcg ccacgccttc gcttgcgatc cgcaggccct cggtgttcat
     1201 gccgcgcccg gcgtgattca cgataaaacc aggcatgtcc ttcgcacgca cggccgtatg
     1261 gcccatctgg cggccgagcg ccatcagcgc gtcgccggca gcggggtctc cacgcaagcc
     1321 gtcgatcacc tcgacgacct tcatcagcgg cacggggttg aagaagtgca ggccgactac
     1381 gcgctcgggc ttggcacagc ccgcggcaat ggccgtaatg gacagcgacg acgtattcga
     1441 cgccagaatg caattttcgc cgaccacgcc ttccagctcg cggaacaatt cccgcttgac
     1501 gtcgagcttc tccacgatgg cttcgaccac cacatcgcaa tcggccaggt cgccgattgc
     1561 accggccgca tgaatgcgcg ccagcgcggc atgcgcatcg gcttcgttca gcttgccttt
     1621 tgcggcgagt ttgttcaggg tatcggcgag atactcgcgt gcagccgcga tggcttgttg
     1681 gttggtgtca tacagacgca cgttcaggcc gccgagcgct gcgatctgcg cgatgccgcg
     1741 tcccatcgcg ccactaccaa ccagccccaa ggtccgaatc tctgtgtcgc gaaaactcat
     1801 ggcgtgtctc actccttatt tgatagatta gcacggtcg
//
LOCUS       DATGBK010000631         4878 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_123569, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000631 DATGBK010000000
VERSION     DATGBK010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4878
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123569"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..540
                     /locus_tag="VKJ77_08945"
     CDS             <1..540
                     /locus_tag="VKJ77_08945"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC45436.1"
                     /translation="AIDTESLADRIDSFPCEIVISDIGMPGINGENNAIAFLRRFLRQ
                     AQRPRVIVVTMIAQPQMLTGLLELGVDGLVDKRDCMEALNQAVIEVIDGGRFVSKRAG
                     ALLGNEFVNVTARAGVLSAREWEVFQLYASGLSLISIAQRLERSVKTIGTQRRSAMRK
                     LGLRSETELIDYLRQIGLA"
     gene            785..1543
                     /locus_tag="VKJ77_08950"
     CDS             785..1543
                     /locus_tag="VKJ77_08950"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HMC45437.1"
                     /translation="MFKKLIGECVGSFSLVFFGCGSTALTSGYFRPDMALVCQAVAFG
                     LAATTLVYVLRPVCAAHFNPAITVGFAVANRFAVRDLVPTISAQVAGAIAGAWLLYIV
                     ASGRPDVSSDLIAFGANGYGAHSPARYQLHAALIVEALTTFVFVLVNLSVASGRHARF
                     NGAVLIGLSLTLCSLLAIPVTNASLNPARSTGAALVVGGWALDQLWLFWAAPLAGGVL
                     AGLIHPMFQRGATSKNEPLTRVGRIDGTLDKRLL"
     gene            1558..>4878
                     /locus_tag="VKJ77_08955"
     CDS             1558..>4878
                     /locus_tag="VKJ77_08955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC45438.1"
                     /translation="MSSPSLLRLVRLMTTLFVLVWAASSVSAEPLRGEREKQATQDYS
                     TLTRDESKARRSEPMPGSTGTEQSQTLNLSVDERAYLRSLPPLTLGVDANWAPFTYVD
                     SSGKSRGIAMAYATYLSKALDIDLERRVYPDWADVSNAFARGQVDMLATTERETPRLA
                     GGISTKSLADYPLVIVGRSDEPVMKGIQDASSRRIVVTARLAASGRLGNLPSGAALTI
                     APNLSSALDRVARDEADLFVGDLVAIDIALAARDDDELEIIGPAGNFEHMSFALRPEF
                     SRLVPLIDRALSAMPYADKQRILAVRQAALDPLSSGWSVSAMRLLPALIAIGVVLAVT
                     LRAFVVLQREMARRVETEQRLATQLSFQQTMMEVVPYPLVAKDRENRYIAVNRAFEKT
                     LGLKREDIIGRTTLEVQSWGSGNSQRLHDLVGISIASGRREEVEIAFHDRDGVPRHGL
                     FWTGEFAAANGAMAGVVGTMIDITDIRDAEMRARENERRLHDVTRSLPAVVFQLRRAK
                     DGLYSFPFIGGDTRHLFGTDLADPAELAALGNDQVAGLPLIHADDKRGVREAIERSAL
                     TLEPVHTEFRSIVDEGRRWIRADLVAHREADGAVVWNGYWVDASVERARADELAAARD
                     AAEAASRAKDDFLAMMSHEIRTPMNGVLGLVEVFENTPLNPDQSQMLGMIQDSASTLL
                     QILDDLLDYSKIEAGRLTIESMPIDLRELVDNAIGLLAGRAHEKGLRVRVDVSPDIAA
                     SLRGDSVRLRQVLFNLISNAIKFTMKGEIALTVNLVDSARGMQTVELSVQDTGIGIAA
                     DAQASLFEPFVQAESSTTRRFGGTGLGLTICHKLVELMGGTLELQSQVGVGTRMIVRL
                     DMPVETTNYQIDGLRGKSGIIAIDDQRVARALVDYGQALGLHLTIRSRDDAALRDPHT
                     FDGVDLVFLSETHPEALPLKTRVIHVTEKPKPTGYRILDNDIRVSVNPISWRGLGAAC
                     VAALTGLPQLVSRATRGIDTNSEPPDRERALRMGRLVLVAEDHPVNQALIRHQLALLG
                     FACDVVPDGVEALAALKHTHYGFLITDCHMPNMTGYELARRVRASELGLSKRLPILGI
                     TASTAPEELSMCREAGMDD"
BASE COUNT          901 a         1446 c         1555 g          976 t
ORIGIN      
        1 gctatagata ccgaatcgct cgcagaccgg atagacagct ttccgtgcga gatcgtgata
       61 tccgacattg gcatgccggg catcaacggc gaaaacaacg ccatagcgtt tctacgacgt
      121 ttcctgaggc aagcacagcg gccgcgagtg atcgttgtga ccatgatcgc gcagccccaa
      181 atgctgacag ggttgctgga actgggcgtg gacggcctgg tcgacaaacg cgattgcatg
      241 gaagcactga accaggcggt tatcgaggtg atcgatggcg gacgtttcgt ctcgaagcgc
      301 gcgggggcgc tcctcggtaa cgaattcgtc aatgtcaccg ctcgcgccgg cgtactgagc
      361 gcccgcgaat gggaagtttt ccagttgtac gcgagcggct tgtcgctgat cagcattgcg
      421 caacgtctgg agcgcagcgt gaaaaccatt ggtacgcaaa ggcgcagcgc gatgcgtaag
      481 cttgggctga gaagcgagac tgaactgatc gactacttga gacagattgg cctcgcataa
      541 cgtcgaaact acgtcgaacc acgtcgaaat tccccttttc aactgacgcc accagaatcg
      601 cataggcaac gaacgggcat cactgtttct cagagatgtt taggaatggt ctgattagtt
      661 cgatgcgcct ttcgccccag acttgaacgc tttacttcgt caacgtgcgt gacccagcca
      721 ttcttttctg tgcggtcggt cgggcgtgcg ttggccaagg gcgaatttca gacggggtga
      781 cggcatgttc aagaaactga taggcgagtg cgtgggaagc ttttcgcttg ttttcttcgg
      841 ctgcggcagc accgctttaa cgagtggtta ttttcgcccc gacatggcgc ttgtctgcca
      901 ggcggtggcc ttcggccttg ccgcaaccac gcttgtctac gttctacgtc ccgtttgcgc
      961 cgctcatttc aatcccgcga ttaccgtcgg attcgccgtt gccaaccgtt tcgctgtgcg
     1021 ggacctggtc ccgactataa gcgctcaggt cgcgggagcg atcgccggcg cgtggctctt
     1081 atatatcgtt gcgagcggac gcccggacgt ctcgtctgat ctcatcgcgt tcggcgcgaa
     1141 tggttacgga gcgcattcac ccgcccggta tcagttgcat gccgcgctga tcgtcgaggc
     1201 gctgacgacc ttcgtgttcg tactcgtgaa tctctcggtc gcgtccggca ggcacgcgcg
     1261 tttcaacggc gccgtgctga tcgggctgtc gctgaccttg tgttcgctgc tcgccattcc
     1321 ggtgacaaac gcgtccttga acccggctcg ttccactggc gccgcgctcg tggtaggcgg
     1381 ctgggcgctg gatcagcttt ggctgttttg ggcggcgccc cttgcgggcg gtgtgctggc
     1441 aggcctcatc catcccatgt tccagcgtgg cgcaacgagt aaaaacgagc cactgacgcg
     1501 agtcgggcgt atcgacggca cgctcgacaa gcgcctgttg taacgagcgc gaacatcatg
     1561 tcctctccct ccctcctccg tctggttcgc ctgatgacga cgctgtttgt gctcgtgtgg
     1621 gcagcgtcga gcgtttcagc cgagcctctg cgtggtgaac gcgagaagca agctacgcaa
     1681 gactattcga cgctgacccg cgacgaatcc aaggctcgcc gctcagaacc catgcccgga
     1741 agcaccggta ccgaacagtc gcagacgctg aacctgagcg tcgacgaacg cgcctatttg
     1801 cgctcgctgc cgcctcttac gctgggcgtc gatgccaatt gggcgccgtt cacctatgtg
     1861 gattccagcg gcaagtcgag aggcatcgcc atggcatacg caacctattt gtccaaggcg
     1921 ctagatatcg atctcgagcg gcgtgtgtat ccggactggg ccgatgtgtc gaatgccttt
     1981 gctcgcgggc aagtcgacat gctcgcgacg accgagcgcg agacgccgcg tcttgccggc
     2041 ggaatctcga ccaaatcgct ggcggactat ccgctcgtca tagttgggcg gtcggacgaa
     2101 ccggtgatga aaggtatcca ggacgcgtca tcgcggcgga tcgtcgtgac ggcgcgtctg
     2161 gcggctagcg ggcggcttgg caatttgccg tcgggcgccg cgcttaccat cgcgcccaac
     2221 ctgagttccg cactcgaccg agtggcccgg gacgaggcgg atctgttcgt cggcgatctc
     2281 gttgcgatcg atatcgcgct ggccgcgcgt gacgacgacg agttggagat catcggaccg
     2341 gccggcaact tcgagcatat gagcttcgcg ctgcgtccgg agttcagccg gctcgtgcca
     2401 ctgatcgacc gtgccttgag cgctatgccc tacgccgaca aacagcgcat cctcgccgtc
     2461 cgccaagccg cgctcgaccc gctgtcaagc ggctggagtg tcagcgccat gcggctactg
     2521 ccggcgctga ttgctattgg cgtggtgctg gcggtcacgc tgcgcgcgtt cgttgtcctc
     2581 cagcgcgaaa tggcaaggcg cgtggaaacg gagcagcgtc tcgctacgca actcagtttc
     2641 cagcagacca tgatggaagt cgtgccgtat ccgctggtcg cgaaggatcg ggagaaccgt
     2701 tacatagcgg tgaaccgcgc gttcgaaaag acgctcgggc tgaagcgcga ggacattatc
     2761 ggacgcacga cgctcgaggt tcagtcgtgg ggctccggca acagccagcg cctgcatgat
     2821 ctcgtgggca taagtatcgc gagcgggcgg cgggaggagg tcgaaatcgc ctttcacgat
     2881 cgcgacggcg tgccccgtca cgggctcttc tggaccggcg aattcgcggc ggcgaatgga
     2941 gcaatggcgg gtgtcgtcgg cacgatgatc gacatcacgg acatccgcga cgctgaaatg
     3001 cgcgcgcgcg aaaacgaacg ccgcctgcac gacgtcacac gctcgctgcc ggctgttgta
     3061 tttcagttgc ggcgcgcgaa agatgggttg tacagcttcc cgttcatcgg cggcgatacg
     3121 cgccatttat tcggtaccga tctcgcggat cccgccgaac tcgccgcgct cggcaacgac
     3181 caggtggcgg gtctaccgct gattcacgcc gatgacaaac gcggtgtgcg cgaggcgatc
     3241 gagcgttcgg cgcttacgct cgagccggtt cacacggagt ttcgctcgat cgtcgacgaa
     3301 ggccgtcgct ggattcgcgc ggatctcgtg gcgcaccgcg aggcggacgg cgcggttgtc
     3361 tggaatggct attgggtcga cgccagtgtt gagcgcgcgc gggccgacga actcgccgcg
     3421 gcgcgcgatg ctgcggaagc ggcctcgcgc gccaaggacg atttcctcgc gatgatgagc
     3481 cacgaaatcc gtacgcccat gaacggcgtg ctcggactgg tggaagtatt cgagaacacg
     3541 ccgctcaatc ctgatcaatc gcagatgctc ggaatgatcc aggactcggc gagtacattg
     3601 ctgcagattc tcgacgatct gctcgactat tcgaagatcg aggcggggcg tctcaccatt
     3661 gaatccatgc cgattgacct gcgcgaactg gtcgataacg ccattggttt gctcgcggga
     3721 cgcgcgcacg aaaaaggatt gcgcgtgcgg gtggacgtat cgccggatat cgccgcgagt
     3781 ttgcgcggcg acagcgttcg gctgaggcaa gtgcttttca atctgattag caatgccatc
     3841 aagttcacga tgaaaggcga gatcgcgctc acggtgaatt tagtcgacag cgcgcgcggt
     3901 atgcagaccg tcgagctgag cgtgcaagac acaggaatcg ggattgcggc ggacgcgcag
     3961 gcgagtctgt tcgagccgtt cgtgcaggcg gaatcgtcca ctacacgccg gtttggcggc
     4021 acgggcctcg ggttgacgat ctgtcacaag ctggtcgaac tgatgggagg aacacttgag
     4081 ctgcaaagtc aggtgggcgt cggcacgcga atgatcgtgc ggctcgacat gccggtcgaa
     4141 acgacgaact atcagatcga tggcttgcgg ggcaagagcg gaattatcgc tatcgacgat
     4201 cagcgtgtgg cgcgtgcgct ggttgactat ggtcaggcgc tcggcctcca tctgacaatc
     4261 cggtctcgcg acgacgccgc gctgcgtgat ccacatacct tcgacggcgt cgatctcgtg
     4321 tttctcagcg aaactcatcc ggaagcgctg ccgctgaaaa cgcgtgtcat ccacgtcacg
     4381 gaaaaaccga aacctacggg ttatcgcatt ctcgacaacg acattcgcgt aagcgtcaat
     4441 ccgatctcct ggcgcggtct gggcgctgca tgcgtggccg cgttgacggg gttgccgcag
     4501 cttgtttcgc gtgcgacgcg cggtatcgat acgaacagcg agcctcccga ccgcgagcgc
     4561 gcactccgca tgggacggct tgtgctggtc gcggaagatc atccggtgaa ccaggcgctg
     4621 atccggcatc aactggcgct gcttggcttc gcgtgcgacg tggtgccgga tggagtcgaa
     4681 gcgctcgccg cactcaagca cacgcactat ggctttctca tcaccgactg ccacatgccg
     4741 aacatgaccg gctatgaact ggcacggcgc gtgcgcgcga gcgagctggg gttgtcgaag
     4801 agattgccca tccttggcat taccgcgagc accgccccgg aggagttgtc catgtgccgc
     4861 gaagccggca tggacgac
//
LOCUS       DATGBK010000632         3129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_193386, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000632 DATGBK010000000
VERSION     DATGBK010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193386"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..1162
                     /locus_tag="VKJ77_08960"
     CDS             173..1162
                     /locus_tag="VKJ77_08960"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HMC45439.1"
                     /translation="MRVFRGLPNAESRAPCALTIGNFDGVHRGHQALLAHVRAAADAR
                     GLPVCVMTFEPHPREFFNPAGAPPRIAMLRDKLEALRTNGVDRVVVEHFNHTFASQPP
                     DTFVENVIVNGLHARWVMIGDDFRYGAKRAGDFESLQEAGRKHSFEVEQMATVADLNG
                     ARISSSGVRASLVAGDLDAARLALGRPYVISGHVVHGQKLGRDLGFPTLNMPIAHKRP
                     ALAGIFVVRVHGLGPEPLPAVASLGLRPTVDDSGRVLLETFVLDWHGDAYGKLVRIEF
                     LKKLRDEEKYVDLETLTAAIARDVTNARAYFASDVNSSGRDSGFATSATDRIR"
     gene            1315..>3129
                     /gene="ileS"
                     /locus_tag="VKJ77_08965"
     CDS             1315..>3129
                     /gene="ileS"
                     /locus_tag="VKJ77_08965"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HMC45440.1"
                     /translation="MSNKKEAKPQSKYPVNLLDTPFPMRGDLPKREPQWVKEWQDNKI
                     YEKIRAASKGRKKFILHDGPPYANGDIHLGHAVNKILKDMIVKARNLAGFDAVYVPGW
                     DCHGMPIEIQIEKQFGKSLPAREVMEKARTYASAQIEKQKLGFRRLGVLGDWDNPYKT
                     MNFTNEAGEIRALGKILEKGYVYRGLKPVNWCFDCGSALAEAEVEYQDKVDPTIDVLF
                     TFAEPEKTAQAFGLNALPKQEGGIVIWTTTPWTIPANQALNVHPEIVYSLVNTEKGLL
                     ILAEDRVEECLKQYGLTGSTIATTTGEKLSGLRFHHPLSASHPGYKRTAPVYLGDYVT
                     TESGTGIVHSSPAYGVEDFVSCKAHGMTDSDIINPVMGDGRYIESLPLFGGLSIWEAN
                     DQIVEALRSAKSLLKTEKYKHSYMHCWRHKTPIIYRATSQWFAGMDVKPNDTSRTLRE
                     TALEGIENTAFFPAWGKQRLYSMIANRPDWTLSRQRQWGVPMAFFVHKETGELHPRTL
                     ELLEEVAKRVEVSGIEAWQTLDPAELLGNEANMYEKNRDTLDVWFDSGTTHWHVLRGS
                     HKDSLQFPADLYLEGSDQHRGWFHSSLLTASMLDGRPPY"
BASE COUNT          645 a          986 c          947 g          551 t
ORIGIN      
        1 gatgctgtca aaacccggcg aatccgcccg gcccgcagtg ggctcagcct ccgtcctgtg
       61 ctgtgagcgt ttataatcga acgctttgcg gcgttgccag cctcgcgctg catcggccct
      121 gcgttactgt atttagccca cttaaccgcc aaccgccgac ccaaccgcta tcgtgagagt
      181 ctttcgcggc ctacccaatg ccgaaagccg tgcgccctgt gcgctgacca tcggcaattt
      241 cgacggtgtc caccgtggcc atcaggcgct gctcgcgcac gtgcgcgccg ccgcggacgc
      301 ccgcggcctg ccggtctgcg tgatgacctt cgagccgcat ccccgcgaat tcttcaatcc
      361 cgccggcgcg ccgcctcgca tcgccatgct gcgcgacaaa ctcgaagcgc tacgcacaaa
      421 cggcgtggat cgcgtcgtgg tcgaacattt caatcacacc ttcgcaagcc aaccgccgga
      481 tacgttcgtc gaaaacgtga tcgtgaacgg cctgcacgcg cgctgggtca tgattggcga
      541 cgatttccgc tacggcgcga aacgcgcggg cgatttcgaa tcgctgcagg aagccggacg
      601 caaacacagc ttcgaagtcg aacaaatggc gacggtcgcg gacctgaacg gcgcgcgcat
      661 ttcgagttcc ggcgtgcggg cgtcgctggt ggcaggcgac ctcgacgccg cccgtctcgc
      721 acttggccgc ccctacgtca tcagcggcca tgtagtccac gggcaaaaac tcggccgcga
      781 tctcggcttt cctacgctca acatgccgat cgcccataag cggccggcgc tcgcaggcat
      841 cttcgtcgtg cgcgtgcatg ggctcggccc cgagccgctg ccggccgtgg cgagcctcgg
      901 actgcgtccg accgtggacg actccggccg cgtgctactt gaaaccttcg tgctcgactg
      961 gcatggcgac gcctacggca agctcgtgcg tatcgaattc ctgaaaaagc tgcgcgacga
     1021 ggaaaaatac gtggacctcg aaactctgac ggccgccatc gcgcgtgacg tgaccaacgc
     1081 gcgtgcctat ttcgcttcag acgtgaactc aagtggccgc gacagcggtt tcgccacctc
     1141 ggccaccgat cgaattaggt gagcgcgtgg cgccgggtgc ttgaagtttc caatcaagct
     1201 cccgacgcgc tgcccgctgc ctcgctaaac acgcaccttc gagcccgttc ccgagcttgc
     1261 ccgcttggaa ccgccgcttc accgccgctt caccgaatag atatcgagtc atccatgagc
     1321 aacaagaaag aagccaagcc ccagtcgaaa tatccggtca atctgctgga tacgccgttc
     1381 cccatgcgag gtgacttgcc caagcgcgag ccgcaatggg tgaaggaatg gcaggacaac
     1441 aagatctacg agaagatccg cgccgccagc aagggccgca agaagttcat cctgcacgat
     1501 gggccgccgt atgcgaacgg cgacatccac ctcggccacg cggtgaacaa gatcctgaaa
     1561 gacatgatcg tgaaggcgcg caatctggcg ggcttcgacg cggtctatgt ccccggctgg
     1621 gattgccatg gcatgcccat cgaaatccag atcgaaaagc agttcggcaa gtcgttgcct
     1681 gcacgcgaag tgatggaaaa agcgcgcacc tacgcgagcg cgcagatcga aaagcagaag
     1741 ctcggcttcc ggcgcctcgg tgtgctcggc gactgggaca atccgtacaa gacgatgaat
     1801 ttcaccaacg aagcgggcga aatccgcgcg ttgggaaaga tcctcgagaa gggttatgtg
     1861 tatcgcgggc tgaagccggt gaactggtgt ttcgactgcg ggtcggcctt ggctgaagcc
     1921 gaagtcgagt atcaggacaa ggtcgatccg accatcgacg tgctgttcac cttcgccgag
     1981 ccggaaaaga ccgcgcaggc gttcggcctg aacgcgttgc cgaagcagga aggcggcatc
     2041 gtgatctgga cgacgacccc gtggaccatc cccgcgaacc aggcgctcaa tgtgcatccg
     2101 gagattgtct atagcctcgt caatacggaa aaaggcctct tgatcctcgc cgaagatcgc
     2161 gtggaagaat gcctgaagca gtacggcctc acgggttcga ccatcgcgac cacgacgggc
     2221 gaaaagttga gcggcctgcg ctttcatcat ccgttgagcg cgtcccaccc cggctataaa
     2281 cgcaccgcgc ccgtgtatct cggcgactac gtgacgaccg aaagcggcac gggaatcgtg
     2341 cattcgtcgc cggcgtatgg cgtggaagac ttcgtgtcgt gcaaggcgca tggcatgacc
     2401 gactccgaca tcatcaaccc ggtcatgggc gatggacggt atatcgagtc gttgccgttg
     2461 ttcggcggac tctcgatctg ggaagccaac gaccagatcg tggaagcgct gcgtagcgca
     2521 aagtccttgc tgaaaaccga gaagtacaag cacagctaca tgcactgctg gcgccacaag
     2581 acgccgatca tctatcgcgc gacgtcgcag tggtttgccg gcatggacgt gaagcctaac
     2641 gacacgtcgc gcacgctgcg tgagacggcg ctggaaggga tcgagaacac cgcgttcttc
     2701 ccggcctggg gcaagcagcg gctgtacagc atgatcgcga accggccgga ctggacgctg
     2761 tcgcggcaac gccagtgggg cgtgccgatg gcgttcttcg tccacaagga aaccggcgaa
     2821 ctgcatccgc gtacgctcga attgctggaa gaagtggcca agcgcgtgga agtgagcggc
     2881 attgaagcgt ggcaaacgct cgatccggcg gaactgctcg gcaatgaagc caacatgtac
     2941 gagaagaatc gcgacacgct cgacgtgtgg ttcgactcag gcacgacgca ctggcacgtg
     3001 ctgcgcggct cgcacaagga ttcgctgcaa ttcccggcgg atttgtatct ggaaggctcg
     3061 gaccagcatc gcggatggtt ccattcgtcg ctgcttaccg cctccatgct cgatggccgt
     3121 ccgccgtat
//
LOCUS       DATGBK010000633         2823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285735, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000633 DATGBK010000000
VERSION     DATGBK010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285735"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(80..1585)
                     /locus_tag="VKJ77_08970"
     CDS             complement(80..1585)
                     /locus_tag="VKJ77_08970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MDR family MFS transporter"
                     /protein_id="HMC45441.1"
                     /translation="MESLQPSVALPTIEERPPIRLLFTALLLVMLLGALDQTIVSTAL
                     PTIVGELGGLESLSWVVTSYLLTSTIVVPLYGKFGDLFGRKVVIQASILIFLAGSILC
                     GVAQDMTQLIVLRALQGLGGGGLMVVTMAAIADVIPPAERGRYQGLFGGVFGLATVVG
                     PLLGGFIVEHLSWRWIFYINVPLGVLALIVIGLVFKPHVAHVKHKIDYMGAAFLAASL
                     TCIILFTSQGGTLLPWSSPQLWFTLALGIITLGGFVYEERLADEPIMPLELFRERTFV
                     LSGLIGFIIGFSLFGAITFLPLYLQVAKGSTPSQAGLQVLPMMAGLLSTSIISGRLIS
                     RIGKYRWFPICGTALVACGMFLLSTLQLDTPLHTMYLFMLLLGLGLGMVMQVLVLAVQ
                     NAVPFKNIGVATSGATLFRSIGGSVGVATFGAIFTNGLHSRLADAMPAGAELPRSMGP
                     TMVQQLPAAVRDIYLNAFSGSMHVVFLVAGAVVLLAFALSWLMQDKPLRSK"
     gene            1659..2354
                     /locus_tag="VKJ77_08975"
     CDS             1659..2354
                     /locus_tag="VKJ77_08975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC45442.1"
                     /translation="MTKDVTDPSGQSIPAVPAESPKRGRRPGRPTGTQHGEPRALLLD
                     VALVLFARQGIMETTLGAIAREAGVTPAMVHYYFKTRDQLLDVLIDERFVPLRAELGR
                     AFADSDAEPAEALRAFAEGLVAVAERHPWFATLWVREVISEGGLLRQRIAERFGDANK
                     KASIARIAQWQKEGKLNPHLEPSLLFVSLFGLTVLPLAVTYTWAEESGGCAPRRDQIA
                     RHAVALLMHGVGP"
     gene            2519..>2823
                     /locus_tag="VKJ77_08980"
     CDS             2519..>2823
                     /locus_tag="VKJ77_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45443.1"
                     /translation="MTSAQDLAQSRSDHDAGHHARASDSGSDSLSAGTISARLDRLPA
                     TRSMWILVVLLSLGFFFELYDLLYSGYVAPGLVKSGILTSTTVGLFGLTGVASFIASL
                     "
BASE COUNT          620 a          845 c          855 g          503 t
ORIGIN      
        1 cttcattgcg cggacgttcc aaagttaaag tgtgtcagct taaaccaaag cgctgctgac
       61 gcacttcatc tcattgccct catttgctgc gcagcggctt gtcctgcatc aaccaggaca
      121 acgcgaaagc gagcagcacg accgcgccgg ccacaagaaa cactacgtgc atcgagcccg
      181 agaacgcgtt gagatagata tcgcgaacag cggcgggaag ttgctggacc atcgtcggcc
      241 ccatcgatcg cggtaactcc gcccccgccg gcatggcgtc tgccaggcgt gaatgcagac
      301 cgtttgtaaa gatagcgccg aacgttgcga cccccaccga cccgccgatc gaccggaaca
      361 gcgtcgcgcc ggacgttgcc acgccgatat tcttgaacgg caccgcattc tgcacggcga
      421 gcaccagcac ctgcatgacc atgccaagtc caagtcccag cagcagcatg aacagataca
      481 tggtgtgaag cggcgtatcc agttgcagcg tggatagcaa gaacatgccg caggccacga
      541 gcgcggtccc gcagatcggg aaccagcgat attttccgat tctgctgatc agccggccgc
      601 tgatgatgga ggtggacagt aggccggcca tcatcggcaa aacttgcagg ccggcttgcg
      661 aaggtgttga acccttcgcc acttgcagat acagcggcag gaacgtgatg gcgccgaaca
      721 gcgaaaatcc gatgatgaaa ccgatcagcc cgctcagcac gaaagtgcgt tccctgaaaa
      781 gctcaagcgg cataatcggt tcgtcggcga gccgttcttc gtagacaaaa ccgcccagcg
      841 taatgattcc gagcgcgagc gtgaaccaaa gctgcggcga actccacggc agcagcgtgc
      901 cgccctgact ggtaaaaagg atgatacaag tgagcgaagc ggctaaaaaa gcggcgccca
      961 tgtaatcgat tttatgtttt acatgcgcca cgtgcggctt gaacacgagt ccgatcacga
     1021 tcagtgcaag cacgccgagc ggtacgttga tatagaaaat ccagcgccac gagagatgct
     1081 cgacaataaa cccgcccagc agcggtccaa caaccgtcgc aagtccgaac acgccgccga
     1141 acagaccttg gtagcggccg cgttcggcgg gcggaatgac gtcggcgatg gcagccatgg
     1201 tcacgaccat caaaccgccg ccgccgagcc cctgcaacgc gcgcagcacg atcaactggg
     1261 tcatgtcttg cgccacgccg cacaggatcg agccggcaag aaaaatgagg attgacgcct
     1321 gaatgacgac tttgcgacca aacagatcgc cgaatttgcc gtacagcggc accacgatag
     1381 tcgacgtcag caggtatgac gtcaccaccc atgacaggct ttcgagcccg cccagctcgc
     1441 ccacgatggt aggcagcgcc gtcgaaacga tggtctggtc gagcgcgccg agcagcatga
     1501 cgagcagcag cgccgtgaaa agcagccgga ttggaggtcg ctcttcaatg gtgggaagcg
     1561 cgacagaggg ttgcagggat tccattcagc cgcccgatga gataaattaa tgttggagtt
     1621 aatattaggc gacgccgttc gcggggtcaa ttgccactat gactaaagat gtaaccgatc
     1681 cttccggaca gtccattcct gcggtccccg ccgagtcgcc gaagcgtggc cgccggcccg
     1741 ggcggccgac tggcacccag cacggcgaac cgcgtgcgct gttgctggac gtcgcgctgg
     1801 ttttatttgc gcgtcaggga atcatggaga ccacgctcgg cgcgatcgcg cgcgaggcgg
     1861 gcgtcacgcc ggccatggtc cattactact tcaagacgcg cgatcaactg ctggatgtgt
     1921 tgatcgatga gcgattcgtg ccgttgcgcg ccgaactcgg acgtgcgttc gccgactcgg
     1981 acgcggagcc ggcggaggca ttgcgcgcgt tcgccgaagg tcttgtcgcc gtggcggagc
     2041 ggcatccgtg gtttgcgacg ctgtgggttc gcgaagtcat cagcgagggc ggcctgctgc
     2101 gccagcgtat cgccgagcgt ttcggcgatg ccaataagaa agcatcgatc gcacgcattg
     2161 cgcaatggca gaaggagggc aagctcaacc cgcacctgga gccatcgctg ctgtttgtgt
     2221 cgctattcgg actgacggtg ttgccgctgg cggtgactta tacgtgggct gaggagagcg
     2281 gcggctgtgc gcccaggcgc gaccagatcg cgcggcacgc ggtggcattg ctgatgcacg
     2341 gcgtcgggcc atagatcggg aagaatgttc ctatgaatgt tcctattcct gtaacaaatc
     2401 tgcagatacg ccgttaaaat gcgcgccggg aacgctgccc ggccgctcga taaaaaaggg
     2461 cgcgtcgcag gcaggaaact ggccaagaca agctgccaag acaaggagac ataaatcgat
     2521 gacaagcgct caggacctcg ctcaatcccg atctgatcat gacgccggcc accacgctcg
     2581 tgcatcggat tcgggatcgg attcattaag cgcgggtacg atctccgcac ggctcgatcg
     2641 cctgccggcg acccgctcga tgtggatact cgtcgtcttg ctgagcctcg ggttcttctt
     2701 tgaactctac gacctgctgt actccggcta cgtcgcgccg gggctggtca agagcggcat
     2761 tctcacgtct accaccgtcg gcctgttcgg cctgacgggt gtcgcaagtt ttatcgcgtc
     2821 gct
//
LOCUS       DATGBK010000634         1850 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_193390, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000634 DATGBK010000000
VERSION     DATGBK010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193390"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..>1850
                     /locus_tag="VKJ77_08985"
     CDS             130..>1850
                     /locus_tag="VKJ77_08985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45444.1"
                     /translation="MNGPPPSAFPIFDGSKRAEADALTLVGLTVAYRSRGRDREVLQD
                     ISLRVKRGEAYGLVGESGCGKSTAALAILRYLPRNGRVKSGKISIAGHDIASMNADAL
                     RHMRANAVSMVYQDPGRALNPSLTIARQVSEAFELAGASVNDALEHTIDILRRVRISS
                     PERVMECYPHQLSGGMQQRVVIAMALACNPELLILDEPTTGLDATVEAEVLDLIAQLR
                     EELGTAVLFISHNLAVIGRMCDRVGVLYAGKLVEEGTTRDVFARPRHPYTVGLLRCLP
                     TTGRSKDTGRLDTIPGSLPLPGSVTQGCIYAQRCKLADDRCHRDAPPPYRVSAAHGDQ
                     MARCHYHERAIDLPRATPEVLSAAVDRTDAPLALRAENLSKTFHIGGESLRAVHDVSL
                     ELALGETLGLVGESGSGKTTLAKLLLGLLSPDAGGSIELDGAALPARVTNRNDEQVKS
                     LQIVFQNPDSALNRAHSVRRLIARSLSKLGALRGAAKEARLQSLTAAVRLPERYLSSR
                     TRQLSGGLKQRVAIARAFAGDPRVVVCDEPTSALDVSVQAAILNLLADLQRERGVSYV
                     FISHDLHV"
BASE COUNT          323 a          572 c          614 g          341 t
ORIGIN      
        1 cgcgcttaat tttcatccat cagaccatac cattcacatg tttcggcctg tcaagcggaa
       61 cacgcaagca acgtcgaaac cgtctactta ccttcacggc ctgaaggccg aggtttctcg
      121 gaggcatcga tgaacggacc gccgccatcg gccttcccca tcttcgatgg atcgaagcgc
      181 gcagaagccg acgcgctgac ccttgtcggc ctgacggtcg cataccgctc gcgcggacgg
      241 gatcgcgaag tgctgcagga catctcgctg cgggtaaaac gcggcgaggc ctatgggctc
      301 gttggcgaat cgggctgtgg aaagtccacc gctgccctcg ccatattgcg gtatctgccg
      361 cgcaacggcc gcgtgaagtc ggggaagatt tcaatcgccg gccacgacat cgcttcgatg
      421 aacgccgacg cgttgcggca catgcgcgcc aacgcggtat cgatggtgta tcaggacccg
      481 ggccgcgcgt tgaatccgtc gctcaccatc gcgcggcagg tgtccgaagc gttcgagctc
      541 gcgggcgcgt cggtgaatga cgcgctggag cacaccatcg atatcttgcg gcgcgtgcgg
      601 atctcgtcgc ccgagcgcgt gatggagtgc tatccacatc aattgtcggg cggcatgcag
      661 cagcgcgtgg tcatcgcgat ggcgcttgcg tgcaatccgg agttgctgat cctcgacgaa
      721 cccactaccg ggctcgacgc cacggtggaa gcggaggtgc tcgacctgat cgcgcaactg
      781 cgcgaagagc ttggcacagc ggtgcttttc atcagccaca acctggcggt gatcggacgg
      841 atgtgtgatc gcgtcggcgt gttgtacgcg ggaaaactgg tcgaagaagg cacgacacgc
      901 gatgtattcg cgcggccgcg gcatccgtac acagtaggct tgctgcgctg cctgccaacc
      961 acgggacgca gcaaggacac gggccggctc gacaccatcc ccggctcgct gccgctgccg
     1021 ggatcggtga cgcaggggtg tatctatgcg cagcgctgca agctcgccga tgaccgttgt
     1081 catcgtgacg cgccgccgcc gtatcgggtc tcggccgctc atggcgatca gatggcgcgc
     1141 tgccactatc acgaacgtgc aatcgacttg ccgcgtgcaa cgccggaggt cctgagcgcg
     1201 gcggtcgacc ggacggatgc accgcttgcc ttgcgcgcgg agaatttatc gaagacgttt
     1261 catattggcg gggagtcgct gcgggcggtg cacgatgtat cgctggaact ggcgctgggt
     1321 gaaacgctcg ggctagtcgg tgagtccggc agcggcaaga cgacgctggc gaagctgttg
     1381 ctgggcttgc tctcaccgga tgcgggcggc tcgatagaac tcgacggcgc cgctctgccc
     1441 gcgcgcgtga caaaccgtaa cgacgagcag gtcaagtcgc tgcagatcgt gttccagaat
     1501 ccggattctg cgttgaaccg ggcgcattcg gtgcgtcggc tgatcgcacg gtcgttgtcg
     1561 aaactcggcg cgttgcgtgg ggcggcgaag gaggcgaggc tgcaatcgct gaccgccgcc
     1621 gtgcgtttgc ccgaacgtta cctgagctcg cgcacgcggc aattgtcggg cgggttgaaa
     1681 cagcgcgtgg cgattgcccg tgcgttcgcc ggcgatccgc gcgtagtggt ctgcgacgag
     1741 cccacgtccg ccctcgatgt ctccgtgcaa gccgccatcc tgaacctgct tgcagacctg
     1801 cagcgcgaac gcggcgtgag ctacgtgttt atctcgcacg acctgcacgt
//
LOCUS       DATGBK010000635         2013 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_77181, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000635 DATGBK010000000
VERSION     DATGBK010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77181"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            492..>2013
                     /locus_tag="VKJ77_08990"
     CDS             492..>2013
                     /locus_tag="VKJ77_08990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide reductase N-terminal alpha
                     domain-containing protein"
                     /protein_id="HMC45445.1"
                     /translation="MQTTDNATTSYEGASVRPIGAQSQPSASALAPDATLADYKVIRR
                     NGTVVSFEPSKISIAVTKAFLAVNGGQGAGSARVRELVEQLTQSVIRALVRSRPNGGT
                     FHIEDIQDQVELALMRGGEHNVARAYVLYREKRTQERAHAPETRANALGINVIDNGVS
                     HPLDLDALKARINEACVNLGSEVNADPIVAETVKNLYDGVPMAQVYDSAILAARTMIE
                     KDPAYSQVTARILLHTIRREILEEDVSQGEMATRYAEYFPLFIKQGVEAELLDERLQQ
                     YDLKRLGAALDADRDLQFGYLGLQTLYDRYFLHNETKRIELPQAFFMRVAMGLALNEI
                     DREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIYEALKENA
                     LLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVC
                     AYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVHENGDWTLFSPAT"
BASE COUNT          455 a          603 c          597 g          358 t
ORIGIN      
        1 catttcaaaa gtcaaccctc tgaaggccat tcttcagcaa ataaaagttt ttgagactgt
       61 gcggaatgtc actatacttg gtgctcagag acgtaattcg cactatatgt tgtgttgtcc
      121 aggcggcgcc ccgctcgtag agccggcgcc gcatgctttc cggctataga agaaaacacc
      181 gggtaagcaa ctgatttgtc gcgtaaaaga cgtcggcatt cagtttgaaa gaccgaggca
      241 aacgggcgta gcgagggagg ttgtcttcgt cggtttgaag cgtatcggtc ccaaggaaaa
      301 accatggaac tgagcgcaag aacggcaccg gcaattttcc cgaccaggcc attttcaatt
      361 ttcaatttca tcgtcgtgcg cggttggcaa aaatagtgaa cagcagcaaa gcagcaacaa
      421 gcagccacca cgcgcggcac gcatctcaat ccgcggacgt tccgcaccat cgaacacctg
      481 gagatttgca catgcaaacc accgacaacg ccacgacctc ctacgagggc gcctccgtgc
      541 ggcccatcgg cgcacagagt cagccgagcg ccagcgcgct cgcgccggac gccacactgg
      601 ccgactacaa agtcatccgc cgcaacggga ccgtggtgtc gttcgagccg tcgaagatct
      661 ccatcgcagt gacgaaagca tttctggccg tgaacggcgg ccagggcgct ggctcggcgc
      721 gcgtgcgcga gctcgtcgaa caactgacgc agagcgttat ccgggcgctg gttcgcagcc
      781 gtccgaacgg cggtacgttc catatcgaag atatccagga tcaggtcgaa ctcgcgctga
      841 tgcgcggcgg cgagcacaac gtggcgcgcg cgtacgtgct gtatcgcgag aagcgtacgc
      901 aggaacgcgc tcatgcgccg gaaacccggg cgaacgcgct gggcatcaat gtgatcgaca
      961 acggcgtgtc gcatccgctg gatctggacg cgttgaaggc gcgcatcaac gaagcgtgcg
     1021 tgaatctcgg cagcgaagtg aacgccgacc cgatcgtcgc ggaaacggtg aagaacctgt
     1081 acgacggcgt gccgatggcg caagtctatg actccgccat tctcgccgcg cgcaccatga
     1141 ttgaaaaaga cccggcgtac agccaggtca ccgcgcgcat cttgctgcac accatccgtc
     1201 gcgaaatcct ggaagaagac gtctcgcaag gcgaaatggc cacgcgctac gctgaatact
     1261 tcccgctctt catcaagcag ggcgtggaag cggaactgct cgacgaaagg ctccagcagt
     1321 atgacttgaa gcgcctgggc gccgcgctcg acgccgaccg cgatctgcaa ttcggctatc
     1381 tcggcctgca gacgctgtat gaccgctact tcctgcacaa cgaaaccaag cgcatcgaac
     1441 tgccgcaggc tttcttcatg cgcgtcgcaa tgggcctggc gctgaacgaa atcgaccgcg
     1501 aagcgcgggc gatcgagttc tacaacgtgc tgtcgagctt cgacttcatg tcgtcgaccc
     1561 ccacgctgtt caactccggt acgcgccgtt cgcaattgtc gtcgtgctac ctgacgacgg
     1621 ttgccgacga cctcgacggc atctacgaag cgctgaagga aaacgcgctg ctgtcaaagt
     1681 ttgccggtgg cctgggcaac gactggacgc gcgtgcgcgc gctcggttcg cacatcaagg
     1741 gcacgaacgg caagtcgcaa ggcgtggtgc cgttcctgaa agtcgtgaac gacacggctg
     1801 ttgcggtgaa ccagggcggc aagcgcaagg gcgcggtatg cgcgtatctg gaaacgtggc
     1861 atctggatat cgaagagttc ctggagctgc gtaaaaacac cggtgacgac cgtcgccgca
     1921 cgcacgacat gaacacggcg aactggattc ccgatctgtt catgaagcgc gttcacgaaa
     1981 acggtgactg gacgctgttc tcgccggcaa cct
//
LOCUS       DATGBK010000636         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_216196, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000636 DATGBK010000000
VERSION     DATGBK010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216196"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..173
                     /locus_tag="VKJ77_08995"
     CDS             <1..173
                     /locus_tag="VKJ77_08995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC45446.1"
                     /translation="EEAIEHPALLSVARLEWEHIQRVLAENSGNISATARALNMHRRT
                     LQRKLAKKPVRQ"
     gene            complement(270..1610)
                     /gene="hslU"
                     /locus_tag="VKJ77_09000"
     CDS             complement(270..1610)
                     /gene="hslU"
                     /locus_tag="VKJ77_09000"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014895729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HMC45447.1"
                     /translation="MTTMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVAEPL
                     RQEITPKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRD
                     LIEISIKQTRESEMRKVRSRAIDRAEDRILDILLPSARPTAGFGTAELPDESANSTRQ
                     TFRKRLREGLLDDKEVEIDIEGPQPSMDIMGPPGMEEMTDQIRSMFANIGGGKKTHRK
                     VKVKDALKLLTDEEAGKLLNDEEVKTKAIQNVEQNGIVFLDEIDKIASRSETGGAEVS
                     RAGVQRDLLPLVEGTTINTKYGMIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE
                     LDSLSVEDFESILNTTDASLVKQYTALLATEDVELDFSTDGIRRMAEIAFSVNEKTEN
                     IGARRLYTVIEKLLEEVSFAAGNHTGHPVKIDAAYVDKALNDVAEDEDLSRYVL"
     gene            complement(1653..>2043)
                     /gene="hslV"
                     /locus_tag="VKJ77_09005"
     CDS             complement(1653..>2043)
                     /gene="hslV"
                     /locus_tag="VKJ77_09005"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006760749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HMC45448.1"
                     /translation="VGFAGGTADAFSLLDRFEAKLEKHQGNLTRAAVELAKDWRTDRM
                     LRRLEAMLIAADAQTTLVITGNGDVLDPENGICAIGSGGAYAQAAAQALTENTELSPR
                     DIVEKALTIAGDMCIYTNHNRVIETIE"
BASE COUNT          350 a          637 c          585 g          471 t
ORIGIN      
        1 ccgaagaggc tatcgagcac ccggcgctgt tgtccgttgc gcggctggag tgggagcata
       61 tccagcgcgt gctggctgag aacagcggca atatttcagc cacggcgcga gcgttgaaca
      121 tgcatcggcg gacgctgcag cgcaagctgg cgaagaaacc cgttcggcaa taaacgttat
      181 gtagaacgta aaagggcggt tcccaatttc agtccttcgc tgaaatcggg agccgccctt
      241 ttttcgacta aaacgcctgc tggattccgt cagagcacgt agcgcgacaa atcctcgtct
      301 tcagctacat cgttcaacgc tttatcgacg taagcggcat cgatcttcac cggatgaccc
      361 gtgtgattgc ccgccgcgaa cgacacttct tcgagcaact tttcgatcac ggtataaagc
      421 cgccgcgcgc cgatattctc ggtcttctcg ttcactgaaa acgcaatctc agccatccgg
      481 cgaataccgt ccgtgctgaa atccagctcg acgtcctccg ttgccaacag tgccgtgtac
      541 tgcttcacaa gactggcatc ggtcgtattc agaatggatt cgaaatcctc cacggacagc
      601 gaatccagtt cgacgcgaat cggaaaacgc ccttgcagtt cggggatcag gtcgctcggc
      661 ttggccagat ggaacgcacc gctggcgata aacaggatgt ggtcggtctt gatcatcccg
      721 tatttcgtat tgatggtggt gccttccacg agcggcagca ggtcgcgctg cacaccggcc
      781 cgcgatactt ccgcgccacc cgtctcactg cgcgacgcga tcttgtcgat ctcgtccaga
      841 aacacaatgc cgttctgctc gacgttctga atagccttcg tcttgacctc ttcgtcgttc
      901 agcagcttgc cggcttcttc gtcggtgagc agcttcagcg cgtccttgac cttcaccttg
      961 cggtgcgtct tcttgccgcc tccgatattc gcgaacatgg aacggatctg gtcggtcatt
     1021 tcctccatgc ccggcggccc catgatgtcc atgcttggct gcggcccttc aatgtcgatc
     1081 tccacttcct tgtcgtcgag cagaccttcg cgcaggcgct tgcggaacgt ctggcgcgtg
     1141 ctgttcgcgc tctcgtcggg caactcggcc gtgccgaaac ccgccgtcgg ccgcgcgctt
     1201 ggcagcagga tgtccaggat ccggtcctcg gcgcggtcga tcgcacgcga acgcactttg
     1261 cgcatctcgc tttcacgcgt ctgcttgatc gaaatttcga tcaggtcacg cacgatgctg
     1321 tccacatcgc gacccacgta gccgacctcg gtgaacttcg ttgcttcgat cttgatgaac
     1381 ggcgcgtcgg cgagcttcgc caggcgccgt gcaatttccg tcttgccgac gccggtcggt
     1441 ccgatcatca ggatgttctt cggggtgatt tcctggcgca gcggttcggc gacttgctga
     1501 cgccgccacc ggttgcgcag cgccacggcg accgcttttt tcgcgcggcc ctggccgatg
     1561 atgtgtttat cgagttccga gacgatctcg gcgggagtca ttgtggtcat cgttggtcct
     1621 tgtcctgtgc tcgcgaatac gcgaaagccg tgttactcga tcgtctcgat gacgcgattg
     1681 tgattcgtgt aaatgcacat atcgcccgcg attgtcagtg ccttttcgac gatatcccgc
     1741 ggcgagagtt cggtgttttc ggtgagtgcc tgcgccgcag cctgcgcgta cgcaccgccc
     1801 gaaccgatcg cgcaaatgcc gttttccgga tcgagcacgt cgccattacc cgtgatgacg
     1861 agcgtggttt gcgcgtcggc ggcaatcagc atggcttcca gccggcggag catgcggtcc
     1921 gtgcgccagt ctttcgcgag ctcgacggcg gcgcgcgtca ggttgccctg gtgtttttcc
     1981 agcttggctt cgaagcggtc gaggagcgaa aacgcgtctg ccgtgcctcc cgcgaacccg
     2041 acc
//
LOCUS       DATGBK010000637         3999 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_146598, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000637 DATGBK010000000
VERSION     DATGBK010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3999
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146598"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VKJ77_09010"
     CDS             complement(<1..530)
                     /locus_tag="VKJ77_09010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC45449.1"
                     /translation="MCQLPMSRREWLKLASMFTVAGAAPLLGSLNARAASEPDAPVRI
                     GYLPITDATPLLVAHNNGYFEAAGVSAEKPTLLRSWAQLVEAFLSGQVNVVHLLSPMT
                     VWARYGSQAPAKVVAWNHVNGSGITVAPGIDKLGDLGGKTVAVPFWYSIHNVVLQDML
                     RAQGLVPVLKKTSAPKP"
     gene            complement(609..1397)
                     /locus_tag="VKJ77_09015"
     CDS             complement(609..1397)
                     /locus_tag="VKJ77_09015"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45450.1"
                     /translation="MNPPTVTPRPLVEARGVGLTYPGRTVLQGVNLSVRSGELVSVLG
                     PSGSGKSTLLRILAGLLKPTSGHILVDGAPLDGPRPDVALAFQDPCLLPWLSVERNVG
                     FGLGFSRQPALSRAQRRERVSAALDEVGLAHARTYMPRQLSGGMAQRTALARCLTRQP
                     RTLLLDEPFGALDEVTRADMQRLLVKVVQDTHAGTVLVTHDIDEALLVSDRIVLLGAR
                     GSLIAQWHVSVPAPRTAEVQALGALRIDILQALQDAMSRERTIA"
     gene            complement(1394..2506)
                     /locus_tag="VKJ77_09020"
     CDS             complement(1394..2506)
                     /locus_tag="VKJ77_09020"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC45451.1"
                     /translation="MTTPALRPVTNELEAWLNTHAEAIDTEQDLACEILPRLGGAGLF
                     RIGVPTHLDGTGGVIVDAIEAVANVAEQSLAAAFVFWGQRTFIEYLLQSPNETLRTRW
                     LGRLLSGELAGATGLSNAMKYLSNIEPLQMKARLLDQANEHDRWTLDGSLPWITNLRP
                     EGFVAAAAFDHASEDNKTPPSIFAIPHDAPGVTRSVDLDLIALRSSNTAALRVEGAVL
                     DDTLRITADAPAWLARVRPGFLGLQCGMSIGLARRCLAAVDETSAVSRAAVEDEAAQL
                     ARELDDFTHRLKDGMRNGTFVSAPAALFEIRIALAAVVEAAVGLEVQVTGGRGYLRGQ
                     TGTARRMREAAFVPIVTPSLVQLKNQLALHRKAHAA"
     gene            complement(2503..3075)
                     /locus_tag="VKJ77_09025"
     CDS             complement(2503..3075)
                     /locus_tag="VKJ77_09025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HMC45452.1"
                     /translation="MSRLPLQTIESAPEASRPYLEQALANNGFLPNLVASLANAPTAL
                     ETYLTVAGINGRSGLTLAERETVQITAAAIHGCGFCVAGHTAVALKKAQLDVPVVESI
                     RDQQPIDDARLNAVAVFTRAVIATRGGVSDEELSTFRAAGFTDANALEVVLGVSLATL
                     CNFANNLSQNELNPELAAYRWEPKAKAHAA"
     gene            complement(3170..>3999)
                     /locus_tag="VKJ77_09030"
     CDS             complement(3170..>3999)
                     /locus_tag="VKJ77_09030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC45453.1"
                     /translation="HLPAKPGRIATSVHLTQGDAVFLLHDMPHCLSPLPVAPPAGQES
                     QRVGVMEVLSSDESPAQQSLGLACGFFEFRSGLDDQLLGLIPDHIVARHDTAVPDGPR
                     AVFDLIRAEAQRHPEAPSPLIARLTELLFFYALRTVAARDDIAPGLWSLMRRAEFAPL
                     ITAIIDTPAERWTTDRMADFVHMSRARFCKQFVEACGQPPAQFVTLVRMKVAAAMLRN
                     GTTTPDVAEQVGYQSESAFAQAFKRVTGEQPGAYRRTRTQEPVASSFGIDEKPASLH"
BASE COUNT          744 a         1250 c         1270 g          735 t
ORIGIN      
        1 ggcttcggtg cagaggtttt cttcagcacc ggcacgagcc cttgcgcgcg caacatgtcc
       61 tgcagcacga cgttatggat ggagtaccag aacggtactg ccacggtctt gccgccgaga
      121 tcgccgagct tgtcgatacc gggcgccacc gtgatacccg atccgttcac gtgattccat
      181 gcaacgacct tcgccggcgc ctggctgcca tagcgcgccc agacggtcat cggcgagaga
      241 aggtgcacga cgttgacctg acccgagagg aacgcttcga ccagttgtgc ccagctacgc
      301 aggagtgtgg gtttctcggc ggacacaccg gctgcttcga agtagccgtt gttgtgcgcg
      361 acgagcagcg gggtggcatc cgtgatgggc agataaccta ttcgcaccgg cgcatccggt
      421 tcgctcgcgg cccgcgcgtt caacgagccg agcaagggcg cagcgcccgc tacggtgaac
      481 atggaggcga gtttcagcca ctcgcggcgg gacatcggaa gctggcacat gggtgatcct
      541 gcgtttgctg cattgatgga aagtgaagcg gggtgccggc cgtagtttca gtgatgctta
      601 aaggcgcttt aagcgatggt cctctcgcgc gacatcgcgt cttgcagcgc ctgcagaatg
      661 tcgatgcgca acgcgcccag cgcttgtact tcggctgtgc gcggcgcggg cacactcaca
      721 tgccattgcg cgatcaatga gccccgggcg ccgagcagca cgatccggtc ggacacaagc
      781 aacgcctcgt ctatgtcatg ggtgacgagc accgtgcccg cgtgcgtgtc ctgcacgacc
      841 ttgacgagca ggcgctgcat gtcggcgcgc gtgacttcat cgagcgcgcc aaagggttca
      901 tcgagtaaca gcgtgcgggg ctgacgcgtc agacaacggg cgagggccgt gcgctgcgcc
      961 atgccgccgg ataactggcg cggcatgtag gtacgggcat gagccagacc cacttcgtcg
     1021 agcgccgcgc ttacacgctc gcgccgttgc gctcgcgaga gtgccggttg ccgcgagaaa
     1081 cccaggccga agcccacgtt gcgctcaacc gataaccacg gcagcaggca tgggtcctga
     1141 aacgccagcg ccacatcggg acgcggcccg tcgagcggcg cgccatcgac gaggatgtgc
     1201 cccgaggtcg gcttcagcag tccggcaaga atgcgtagca aggtcgattt gcccgacccg
     1261 ctgggtccca gcaccgacac cagttcgccg gaccggacgc tcaggttcac cccttgcagc
     1321 acggtgcgcc cgggataggt caggccaacg ccacgcgctt caacgagcgg ccgaggcgtc
     1381 accgtcggcg ggttcatgcg gcgtgcgcct tgcgatgcaa tgcaagctga tttttaagct
     1441 gcacgagact cggcgtgacg ataggcacaa aggccgcctc gcgcatgcgg cgcgcagtgc
     1501 cggtctggcc acgcaaataa ccgcggcctc cggtcacttg aacttcgagc ccgacggccg
     1561 cctctaccac tgccgccagt gcgatgcgga tctcgaacaa cgcggcgggc gcggagacaa
     1621 acgtgccgtt gcgcatgccg tctttcagcc gatgcgtgaa gtcgtcgagt tcgcgcgcca
     1681 actgcgcggc ttcgtcttcc acggcagcgc gcgataccgc gctcgtttcg tcgaccgctg
     1741 caaggcaacg gcgtgcgaga ccgatcgaca tgccacactg aagtccgagg aaacccgggc
     1801 gcacgcgtgc gagccaggcg ggggcatcgg cggtgatgcg caacgtgtcg tccagtaccg
     1861 cgccttccac gcgtaaagcc gccgtattgc tcgaacgcaa cgcgatcagg tcaaggtcaa
     1921 cgctacgggt aacgcccgga gcatcgtgcg gaatggcgaa gatggagggc ggagtcttgt
     1981 tgtcttccga tgcgtgatcg aatgccgctg cggctacaaa accttcagga cgcaggttgg
     2041 tgatccacgg caagctgcca tcgagtgtcc atcgatcatg ctcgttcgct tgatcaagca
     2101 gccgtgcttt catctgcaac ggttcgatgt tcgacaaata cttcatcgca ttcgataacc
     2161 ccgttgcgcc cgccagttcg ccgctaagca gccggccgag ccaacgcgtg cgcaacgtct
     2221 cgttcggact ttgcagcaga tattcgatga acgttcgctg tccccagaac acgaaagccg
     2281 ccgcaagcga ttgttcggcc acgttcgcga ccgcttctat tgcatcgaca atcacgccgc
     2341 ccgtgccatc aagatgcgta ggcacgccga tacgaaacag acctgcgcca ccgagccgcg
     2401 gcaggatctc gcaagcgagg tcctgctctg tgtcgatagc ttcggcgtgc gtgtttagcc
     2461 acgcttcaag ttcgttcgtg accggtcgca gcgcaggagt tgtcatgcgg cgtgtgcctt
     2521 ggctttgggt tcccaacggt atgcagccag ttccggattg agttcgtttt gcgagaggtt
     2581 gttggcgaag ttgcacaagg tggcgaggct cacgccgagc acgacttcga gcgcgttggc
     2641 atcggtgaaa ccggccgcgc ggaaggtgct cagctcctca tccgataccc cgccgcgcgt
     2701 cgcgatcacg gcacgcgtga acacggcgac cgcgttgagt cgggcatcgt cgatcggttg
     2761 ctggtcgcgg atcgactcca ccactggcac gtccaattgt gccttcttca atgcgaccgc
     2821 cgtgtgtccg gcaacgcaaa aaccgcagcc gtgaatagcg gctgccgtga tctgcacggt
     2881 ttcccgttcg gcgagcgtca gcccgctacg gccgttgata cccgccacgg tcagataggt
     2941 ttcaagcgcg gtgggcgcgt tcgcgagcga tgccacgaga ttgggcaaaa agccgttgtt
     3001 cgccaacgcc tgctcaagat aagggcggct tgcttcgggt gcgctttcaa tggtttgcaa
     3061 cggcagacgg ctcatgacag ttcctcgtag tcgagcgact attgtcaacg ggccaggtgt
     3121 ttgcagcaat gcgcgtacgt ctgcgattga tgcgcgttcg tctcagcgct cagtgcagcg
     3181 aggctggctt ttcatcaatg ccaaaactcg aagctacagg ctcctgcgta cgcgtgcggc
     3241 ggtatgcgcc cggttgttcc cctgtcacgc gcttgaacgc ctgcgcgaac gcggactcgg
     3301 attgataccc cacctgttcc gcgacgtcgg gcgtcgtggt gccgttccga agcattgctg
     3361 ccgccacttt catccgcacc agcgtgacga actgtgcggg tggttggccg catgcttcta
     3421 cgaactgctt acagaaacgc gcacgcgaca tgtgcacgaa atccgccatt ctgtcggtcg
     3481 tccagcgctc cgcaggggta tcgatgatcg cagtaatcag cggcgcgaat tctgcgcgtc
     3541 gcatcagtga ccagagaccg ggcgcaatgt cgtcgcgtgc agcgactgta cgcagcgcgt
     3601 agaaaaacag cagttcggtc aggcgcgcta tcagcggcga gggagcctca ggatgtcgct
     3661 gcgcctcggc gcgaatcagg tcgaacacgg cacgggggcc gtcgggtacc gcggtgtcat
     3721 gacgggcgac aatatgatca ggaatcaatc cgagcaactg gtcgtccaga cccgagcgga
     3781 attcgaagaa cccacatgcc aagccgagac tctgttgcgc tggactttcg tcagacgata
     3841 gcacctccat cacacccacc cgctggctct cctggccggc tggtggcgcg acgggcagcg
     3901 gcgataggca atgcggcatg tcgtgcagca ggaacacggc gtcgccctga gtcaggtgca
     3961 cgctcgtcgc aatgcgcccc ggttttgcgg gcagatgca
//
LOCUS       DATGBK010000638         2442 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_77192, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000638 DATGBK010000000
VERSION     DATGBK010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77192"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VKJ77_09035"
     CDS             complement(<1..248)
                     /locus_tag="VKJ77_09035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018443401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC45454.1"
                     /translation="MDVIVIGGGIAGIATAYQLRANGHRVCVVERHATVAQGATYGHG
                     GSVLPSPLDVWFGPTFMQTRRAAKTGIVFKPGFNSDTR"
     gene            724..>2442
                     /gene="purL"
                     /locus_tag="VKJ77_09040"
                     /gene_synonym="purI"
     CDS             724..>2442
                     /gene="purL"
                     /locus_tag="VKJ77_09040"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HMC45455.1"
                     /translation="MAHFSCFPGASALSDFRQTRLLETLTRIDPAIVGVRGQYLHFVN
                     SAEPLSDEDSNRIHALMHYGAPFEASTERGAQETFMVVPRFGTVSPWASKATDIAHHC
                     GLTQVRRIERGIEYTVILKSGLLGSGIGGKKALSEQERAAVVAALHDRMTESVAPSRD
                     HALHLFDELPAQPLQAVDILGHGRGALETANAELGLALAEDEIDYLVDSFKQLERNPT
                     DVELMMFAQANSEHCRHKIFNGQWTIDGEPQDISLFNMIRNTEKLNHAGTIVAYSDNS
                     AIMEGGTAERWFPRGSNEHYGRHTELTHTLMKVETHNHPTAISPFAGAATGSGGEISD
                     EGATGRGARPKAGLAGFTVSNLDLPDARQPWENARDSAVPVPQRNPSDAHEPYGKPER
                     IASALQIMIDGPIGAAAFNNEFGRPNLGGYFRAYEQNAGGRVRGYHKPIMIAGGIGNI
                     SDQHTHKMDLPAGSLLIQIGGPGMRIGMGGGAASSMATGANTAQLDFDSVQRGNPEIQ
                     RRAQEVINACWQLGAENPILSIHDVGAGGLSNAFPELVDGANKGARFELRRVQLEESG
                     LSPREIW"
BASE COUNT          468 a          753 c          793 g          428 t
ORIGIN      
        1 tcgcgggtgt cggaattgaa gccgggtttg aacacgatgc cggttttggc cgcgcgacgc
       61 gtctgcatga acgtcgggcc gaaccacacg tcgagcggag agggcagcac ggagccgcca
      121 tgaccgtagg ttgcgccctg cgcaacggtg gcatggcgct cgaccacgca gacacggtgg
      181 ccgtttgcac gcaattgata cgcggtggcg atgccggcga ttccgccgcc gatgacgatg
      241 acatccatga ttcgttctcg cccgaaggcg caagaccaga ctggttcacg agccggcgcc
      301 cgactgagtc agggcgcccg ggattcgccg ggattctcgt gagagaggcg aaccggcgtt
      361 tgtacgagca aaacgccggt cagggaaagc gcgccatgat agcgccaaac gggcgtcgac
      421 gggacgccaa gaggcgtggc acagcggcgc cgttgaccgc gccgctggct gaaacccctt
      481 gcgtagcaag gcccttgaag tacgccgccg gatcgtcgca aaaacgttcc gggcgtattt
      541 cagagattgc gggtgtgccg tctggccgtt tcacggcttg gcccggggtc cgttttcgag
      601 acacttccgg gttataatcc gggtcttccc accgccattt gcggcactgc cgcaaatggc
      661 tccgacgtct ctcgtctcga cgtctgcctc ggcgtttttg acgtccttta agcaccgcga
      721 caaatggccc acttctcgtg tttccccggc gcttcggccc tctccgattt ccgtcaaacc
      781 cgcctgctcg aaacattgac gcgcatcgac ccggcaattg tcggcgtgcg cggccagtat
      841 ctgcatttcg tgaactcggc cgaaccgctc tccgatgaag acagcaatcg catccacgcg
      901 ctgatgcact acggtgcgcc gttcgaggcc agcacggagc gcggcgcgca agagaccttc
      961 atggtcgtgc cgcgcttcgg caccgtgtcg ccgtgggcga gcaaagccac cgatatcgcg
     1021 catcactgcg gcctcacaca ggttcgtcgg atcgagcggg gcatcgaata tacggtgatc
     1081 ctgaaaagcg gcctgctcgg cagcggcatt ggcggcaaga aggcgttgag cgagcaggaa
     1141 cgcgcagcag ttgtggcggc gctgcacgac cgcatgaccg aaagcgtcgc gccgtcgcgg
     1201 gatcacgcac tgcatctctt cgacgaactg ccggcccagc cgctgcaagc cgtcgatatc
     1261 ctcggccatg gccgcggcgc gctggaaacg gcgaacgcgg aactgggcct cgcgctggca
     1321 gaagatgaaa ttgactatct cgttgattcg ttcaagcagc tggagcgcaa cccgaccgac
     1381 gtcgaattga tgatgttcgc gcaggccaac agcgaacatt gccgtcacaa gattttcaac
     1441 gggcagtgga ccattgacgg cgagccgcag gacatctcgc ttttcaacat gatccgcaac
     1501 accgagaagc tgaaccacgc cgggaccatc gtcgcgtatt cggacaactc cgcgatcatg
     1561 gaaggcggca cggccgagcg ctggttcccg cgtggttcga atgaacatta cggccgtcac
     1621 accgagttga cgcacacgtt gatgaaggtc gagacgcata accacccgac cgccatttcg
     1681 ccgtttgccg gcgcggcgac aggctcgggc ggcgagatca gcgacgaagg cgcaaccggc
     1741 cgcggtgcgc gcccgaaggc gggtctggcg ggtttcacgg tatcgaacct ggatttgccc
     1801 gatgcacgcc agccgtggga aaacgcccgc gacagcgccg tgcctgtgcc ccagcgtaat
     1861 ccttcggacg cgcatgagcc gtatggaaaa ccggagcgca ttgcgtcggc tttgcagatc
     1921 atgatcgatg gcccgatcgg cgcggccgcg ttcaacaacg aattcggccg gcccaacctg
     1981 ggcggctatt tccgcgcgta tgagcagaac gctggcgggc gcgtgcgggg ttatcacaag
     2041 ccgatcatga tcgcgggcgg tatcggcaat atctcggatc agcacacgca caagatggat
     2101 ctgccggcgg gatcgttgct gatccagatc ggcggtccgg gcatgcggat cggcatgggc
     2161 ggcggtgcgg cgagttcgat ggcgaccggt gcgaacaccg cgcaactcga cttcgattcc
     2221 gtccagcgcg gcaacccgga aatccagcgg cgcgcgcaag aggtcatcaa cgcgtgctgg
     2281 cagttgggcg ctgagaaccc gatcctgagc atccacgacg tgggcgcggg cgggttgtcg
     2341 aatgcgtttc ctgaattagt tgatggcgcc aacaagggcg cgcgtttcga attgcgtcgc
     2401 gtgcagcttg aggaatccgg tttgtcgccg cgagaaatct gg
//
LOCUS       DATGBK010000639         1500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_100411, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000639 DATGBK010000000
VERSION     DATGBK010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100411"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..807
                     /locus_tag="VKJ77_09045"
     CDS             <1..807
                     /locus_tag="VKJ77_09045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45456.1"
                     /translation="RVNLGLEGILVSGAMSGYAASFLTGSPWIGVLAAGLVGLLLGCL
                     HGLVCSLPRVSDIAFGIALMLLGTGLAFYLGKPFIEPQAPGLQSFDLGAWTSSPQLHN
                     ALHINPLFVIGVVLAFVLQWGLRTTRWGMTLRLVGDHAETARAMGYPLTRIRIIATAA
                     GGFFAGIGGAYLSLVYPGSWNEGLSSGQGLMAVALVIFARWQPLRCLWAALLFGAAGA
                     LGPALQSIGVTSGYYLYNAAPYVLTLAIMIINCRPDRTLAGAPGELSLTR"
     gene            858..>1500
                     /locus_tag="VKJ77_09050"
     CDS             858..>1500
                     /locus_tag="VKJ77_09050"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HMC45457.1"
                     /translation="MNRFIKASPYPWPFDGNLRPDNTALVVIDMQTDFCGHGGYVDKM
                     GYDLSLTRAPIEPIKRVMAMMREQGFTIIHTREGHRPDLSDLPANKRWRSRRAGTEGV
                     GIGDDGPCGRILVRGEPGWEIIDELAPLPGEIVIDKPGKGSFCATDLELILRTRGIVN
                     LVLTGITTDVCVHTTMREANDRGFECTVLADCCGATDPGNHQAALHMITMQGGV"
BASE COUNT          241 a          451 c          490 g          318 t
ORIGIN      
        1 cgcgtgaatc tcgggctcga gggcattctc gtttcgggcg cgatgagcgg ttatgccgcg
       61 tcgttcctga ccggctcgcc gtggatcggt gtgctcgcgg ccgggctggt cggcttgctg
      121 ctcggatgtc tgcacgggct cgtgtgttcg ctgcctcggg tgtcggacat cgcgttcggc
      181 atcgcgctca tgttgctcgg gaccggactg gcgttttatc tgggtaagcc gttcatcgaa
      241 ccacaagcgc cgggtcttca atcgttcgat ctcggcgcgt ggacgagttc cccgcaattg
      301 cataacgcgc tgcatatcaa cccgctgttc gtgatcggcg tcgtgctggc gttcgtattg
      361 cagtgggggc tgcgcacgac gcgctggggc atgaccttgc gtctggtcgg cgatcacgcc
      421 gagaccgcgc gtgcgatggg ttatccgctc acgcgaattc gcatcatagc gaccgctgca
      481 ggcggcttct ttgccggcat cggcggggcg tatctttcgc tggtttatcc gggcagctgg
      541 aacgaagggc tatccagcgg gcaaggattg atggccgtcg cgctggttat ttttgcgcgc
      601 tggcagccgt tgcgatgctt gtgggccgcg ctgcttttcg gtgccgccgg tgcacttggg
      661 ccagcgttgc agtcgattgg cgtgacgagc ggttattacc tgtataacgc tgcgccgtat
      721 gtgctcacgc tcgccatcat gatcatcaat tgccgtccgg accggacgct tgccggcgca
      781 ccgggcgagc tgagcctcac acgctgagct tcacgcgctg aacgacctgc ttatccattc
      841 tcaaggcggc gacgaccatg aaccgattca ttaaagcttc tccgtacccc tggcccttcg
      901 atggcaacct gcgcccggat aacacagcgc tagtcgtgat cgacatgcag acggatttct
      961 gcggccacgg tggttacgtc gacaagatgg gatatgacct gtcgctgacc cgcgcgccga
     1021 tcgagccgat caagcgcgta atggccatga tgcgcgagca gggcttcacg atcattcata
     1081 cgcgcgaagg gcatcggccg gatttgtcgg acctgccggc gaacaagcgc tggcgcagcc
     1141 gccgtgcggg tactgaaggc gtgggtattg gcgacgacgg cccttgcggc cgcatcctcg
     1201 tacgtggtga gccgggctgg gaaatcatcg atgaactggc gccgctgccg ggcgagatcg
     1261 ttatcgataa acccggcaag ggctcgttct gtgcgaccga tctcgagctg atcctgcgca
     1321 cgcggggcat cgtgaacctg gtgttgaccg gcatcaccac ggacgtctgc gtccatacca
     1381 ccatgcgcga agcgaacgac cgcggattcg aatgcaccgt cctcgcggac tgttgcggtg
     1441 cgaccgaccc cggcaaccat caggcggcat tgcacatgat cacgatgcaa ggcggcgtgt
//
LOCUS       DATGBK010000640         2101 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_100419, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000640 DATGBK010000000
VERSION     DATGBK010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100419"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..526
                     /locus_tag="VKJ77_09055"
     CDS             <1..526
                     /locus_tag="VKJ77_09055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC45458.1"
                     /translation="PGQLNIQPRLDGAIDAIKKSGKKIDTQTIATGATVNEELSKIKS
                     FYLGHQDLKGMFAVDAGSTQGVAQVMKESNLPSKGVHGGGFDLLPRTVELIHDGFLDF
                     TIDQQPYVQGFYTVLEAFVFLASGGLVGPANINTGLKFVTKGTVDPYLSTETRYEGKS
                     TKPQILPRTGAIKG"
     gene            535..1524
                     /locus_tag="VKJ77_09060"
     CDS             535..1524
                     /locus_tag="VKJ77_09060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45459.1"
                     /translation="MTNASRANRRPRLWPGALKRSSEIRILAVALILSAYFETANHDF
                     LLTSASLENLSQFIAPVAIIACGEIMLMIGGEIDLSAGMVFAFAPFIMHFASVAGAPA
                     WLALLTGVLAAGVVGLINGAVTVYLRIPSFVTTLGTLFFVNGLTLTLSRGTPVSPPEG
                     TRFSAIMGEWGYSEIIWTVAIAAVMHVLLRHTRWGLHTIAAGANQLGASEAGIQVKRL
                     KLGNFVIAALLAGFTGILEGFRITSIDPQAGGNQIMFLAVAAAVIGGTPLAGGSGTII
                     GGLIGAAVLGILNDGFTLIGINAFTFNMILGAAILAAMIFNIHVVRLARKGDL"
     gene            1524..>2101
                     /locus_tag="VKJ77_09065"
     CDS             1524..>2101
                     /locus_tag="VKJ77_09065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45460.1"
                     /translation="MADASATAPAGTTGTAALRGEDIVKRFGAVTALDGVSLTLRQGE
                     ILGVLGDNGSGKSTLIKILTGFHQQTSGKLFIGGEETLLRSVDHARSLGIECVYQDLA
                     LANSLSIYHNMFLNREIVRRGPFRLLNNSAMRKRAEECLEEIGVHVPSVDLPVEQLSG
                     GQRQAIAVARAVNSNAKILLLDEPLAAMGAREA"
BASE COUNT          397 a          630 c          645 g          429 t
ORIGIN      
        1 gcccggccag ctcaacatcc agccgcgcct tgacggcgca atcgatgcga tcaagaaatc
       61 aggcaaaaaa atcgatacgc aaaccattgc gaccggagcg accgtcaacg aagaactctc
      121 gaagatcaag tcgttctacc tggggcatca ggatctgaaa ggcatgttcg ccgtcgatgc
      181 aggcagcacg caaggcgtcg cccaggtcat gaaggagtcc aacctgccgt ccaagggcgt
      241 gcatggcggc ggcttcgatt tgttgccgcg caccgtcgag ctgatccacg acggtttcct
      301 cgacttcacg atcgatcagc aaccttacgt gcaaggtttt tataccgtgc ttgaagcgtt
      361 cgttttcctt gcttcgggtg gactcgtcgg accggccaac atcaacaccg gcctgaagtt
      421 cgtcactaaa ggcacggtcg acccgtacct gagcaccgag acgcggtatg aaggcaagag
      481 cacgaaaccc cagatcttgc cgcgcacggg tgcgatcaaa gggtgaccac tcccgtgacg
      541 aatgccagcc gggcaaaccg gcgcccgagg ttatggccgg gcgcgctgaa gcgatccagc
      601 gagatccgca tccttgcggt cgcgctgatc ctcagcgcct acttcgagac ggccaaccac
      661 gacttcctgc tgactagcgc gagcctggaa aacctctcgc agttcatcgc cccggtcgcg
      721 atcattgcct gcggcgagat catgttgatg attggcggag agatcgattt gtccgccggc
      781 atggtcttcg cgttcgcgcc tttcatcatg cactttgcca gcgtagcggg cgcacctgca
      841 tggctggccc tgctgaccgg cgtactcgcg gcaggcgtgg tcggcctgat caacggtgca
      901 gtgacggtgt acctgcgcat cccctcgttc gtcaccacgc tcggcacgct gttcttcgtg
      961 aatggtttga cgctgaccct ctcacgaggc acgccggtgt cgcccccgga gggcacgcgt
     1021 ttttcggcga tcatgggcga gtggggctac agcgaaatca tctggacggt ggcgatcgcc
     1081 gcggtcatgc atgtcttgct tcgccacact cgatggggct tgcataccat cgcggcgggc
     1141 gcgaatcagc ttggtgcgag cgaagccggt attcaggtga aacgcctgaa actcggcaac
     1201 ttcgtgattg ctgcgctgct tgccggtttc accggcatcc tggaaggctt ccggataacg
     1261 tccatcgatc ctcaagcggg cggcaaccag atcatgttcc tcgcggtcgc cgcggccgtg
     1321 atcggcggca cgccgcttgc cggcggctcg ggcacgatca ttggagggct gattggcgct
     1381 gcggtgcttg ggatcctcaa cgacggattc acgcttatcg gcatcaacgc gttcacgttc
     1441 aacatgattc ttggcgcggc gatcctggcg gccatgatct tcaacatcca cgtcgtccgt
     1501 ctcgctcgca agggagacct ctaatggccg acgcatcggc gactgcgccg gcaggaacca
     1561 cgggtacggc cgcattgcgg ggcgaagata tcgtcaaacg ttttggcgcg gtgaccgcac
     1621 ttgacggcgt gtcgctgacg ctcaggcaag gtgagattct tggggtactc ggcgacaatg
     1681 gctcgggcaa atcgacgctg atcaagatcc ttaccgggtt ccatcagcag acgagcggca
     1741 agctatttat tggcggcgaa gaaacgctgc ttcgctccgt cgatcatgcc cggtcgcttg
     1801 gcattgaatg cgtctatcag gatctggcgc tggcgaattc gctcagtatt tatcacaaca
     1861 tgttccttaa tcgggagatc gtccggcgcg gcccgtttcg tcttttgaac aacagtgcca
     1921 tgcgtaagcg cgcggaggaa tgcctggaag agatcggcgt acacgtgccg tcggttgatc
     1981 tgccggtcga gcagctttcg ggcgggcagc ggcaggcgat tgctgttgct cgcgcggtca
     2041 attcgaatgc gaagatcctg ctgcttgacg aaccgcttgc ggccatgggc gcgcgcgagg
     2101 c
//
LOCUS       DATGBK010000641         1741 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_77208, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000641 DATGBK010000000
VERSION     DATGBK010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77208"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..1154)
                     /locus_tag="VKJ77_09070"
     CDS             complement(144..1154)
                     /locus_tag="VKJ77_09070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45461.1"
                     /translation="MMDRIMAMRTFVRIVDTNSFTRAASSLGIPRASATTLLQSLEEM
                     LGIQLLVRTTRRLNLTAEGAAYYERCVRILADIDDIEASLQHTDDRPRGRLRVELPAA
                     VANAIVLPALDDFHTRFENIVLALGVSNRQVDLVGEAIDCCILLGALPDSGLSGLSVR
                     RLGALEHVTCASPLYLARQGTPLRLEELTSHVAVNCMCAQTGRLEDFGFQVDGDTVNV
                     PLGGFVQVSDEHAYLECGLRGLGLIQPPRTLAQPYLDSGRLREVLPHYRPAAMPVSVA
                     YLRHRLIPPRVRAFVNWLAELFETARHVSHELPPKLPHELPHELSGIRPILRGMEADE
                     PA"
     gene            complement(1253..>1741)
                     /locus_tag="VKJ77_09075"
     CDS             complement(1253..>1741)
                     /locus_tag="VKJ77_09075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 family protein"
                     /protein_id="HMC45462.1"
                     /translation="VEQRDVAYVAVSRAPLEKIDAFKKRMGWHFRWASSFGSDFNYDY
                     HVSFTPEQCEKGKVYYNFELNDVTAGGFDSDELPGVSVFYKDDAGDVFHTFSAYGRGG
                     EPLIGTYNLLDLTPKGRDEEHNMMDWLRHHDRYDEVRRGADTGAAATDQASQHEAGRC
                     CH"
BASE COUNT          342 a          558 c          508 g          333 t
ORIGIN      
        1 aaaccgatca tgtacggcga catgatcgag aatttcggca tcgtcatgat gctgaccgtt
       61 ccggtgatcg tggccgtcgc cttccgcgtg ggtctcgatt cctggctgga cgctgaataa
      121 accgagtcgg aaagccccct cgctcaggcc ggttcatccg cctccatccc acgcagaatc
      181 gggcgtatgc ctgacagctc atggggtaat tcgtgtggca acttaggtgg caactcatga
      241 ctcacgtgcc gcgcggtctc gaacagttcc gcgagccagt tgacgaacgc acgcacgcgc
      301 ggcggaataa ggcgatgacg cagataggcc accgataccg gcatggctgc gggccggtag
      361 tgcggcagca cttcacgcag ccggccagag tcgaggtacg gctgcgcgag cgtccgcggc
      421 ggctggatca accctagccc tcgcaaccca cactccagat aggcatgctc gtcgctgacc
      481 tgcacgaagc ccccaagcgg tacattgact gtgtcgccat cgacttgaaa accgaaatcc
      541 tccaggcgcc cggtctgcgc gcacatgcaa ttcaccgcga cgtgactggt tagctcctcg
      601 agccgcagcg gcgtgccctg ccgcgcgaga tagagcgggc tcgcacaggt cacatgctca
      661 agcgcgccga gtcgccgcac cgacagaccc gagagtcccg aatccggcaa cgctccaagc
      721 aggatgcagc aatcaatcgc ttcgccgacc aaatcgacct gccggttgct gacgccgagc
      781 gcgagcacga tattctcaaa gcgcgtgtga aagtcatcga gcgcgggaag cacgatcgca
      841 ttggcaaccg ccgccggcag ctcgacgcgc aaccgcccgc gtggccgatc gtcggtatgc
      901 tgcaagctcg cctcgatgtc gtcgatgtca gcaagaatcc gcacgcaacg ctcgtaatac
      961 gcggcgccct cggcggtcag gttgagccgg cgcgtggttc gcacaagcaa ctggatgccg
     1021 agcatttcct cgaggctctg cagtagcgtt gtcgcgcttg cgcgcggaat cccgagcgag
     1081 cttgcggcac gggtaaagct gttggtgtcg acaatgcgca cgaatgtccg catcgccatg
     1141 atgcggtcca tcacgggcgt ttctcctgtg attttggttt tcgaggcacc gcgtgcactg
     1201 ttggcacgcg gtgcctatgc ctgttcgcag cttttgaatc cgccgctcac ggctagtggc
     1261 aacagcgtcc tgcttcatgc tgcgaagcct ggtcggttgc agccgccccg gtatctgcac
     1321 cacgacgaac ctcgtcataa cgatcgtgat gacgcaacca gtccatcatg ttgtgctctt
     1381 cgtctcggcc tttcggcgtg aggtcgagca aattgtaggt gccgatgagc ggctcgccgc
     1441 cgcgtccata tgccgagaac gtatggaaca catcgccggc atcgtccttg tagaaaacgc
     1501 tgaccccggg taactcatcg ctgtcgaagc cccctgccgt gacgtcgttc aactcgaagt
     1561 tgtagtacac cttacctttt tcacactgct cgggcgtgaa cgaaacatga tagtcgtagt
     1621 tgaagtcgct gccgaacgac gacgcccagc ggaaatgcca acccatgcgc ttcttgaacg
     1681 cgtcgatttt ctctagcggc gcacgcgaca ccgcgacgta cgccacatcg cgttgctcga
     1741 c
//
LOCUS       DATGBK010000642         2669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_77222, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000642 DATGBK010000000
VERSION     DATGBK010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77222"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..637)
                     /locus_tag="VKJ77_09080"
     CDS             complement(<1..637)
                     /locus_tag="VKJ77_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HMC45463.1"
                     /translation="MSTPAPARVTAPPSGWRAAESPFHAGELAAQERAGVRERMDVDA
                     RRGIRDYMPDQHRRFFAEQPFMVLGGVDETGQPWATLRVGAPGFISTPDEHTLRISGR
                     SLAGDPLARTWQVGSVLGGLGIQPATRRRNRVNGVITAIDDQAITLAVSQSFGNCAKY
                     IQSRTPVEFDAEEGTQRPLISNRLNDADRALLARADTFFVASANTSSEAGMG"
     gene            complement(702..1352)
                     /locus_tag="VKJ77_09085"
     CDS             complement(702..1352)
                     /locus_tag="VKJ77_09085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012217558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HMC45464.1"
                     /translation="MPTLQKPLQPIRLHTTLLSGHGHRAKLFLTLLDLPFTTIELNMA
                     AGDNRQPAHLALNPFGEVPVIEDGDIVLTDSNAILVYLARKYGDASWLPDDPVGAAAV
                     QRWLSLAAGKIAYGPCAARLVTVFGAPKDYATAKKMAEDLFAIIDPEFRDKPFAVGQT
                     PTIADIAAYSYIAHAPEGGISLEPFPHLRAWLKRVEALPRFLPMPASKAGLLAEAG"
     gene            1470..2381
                     /locus_tag="VKJ77_09090"
     CDS             1470..2381
                     /locus_tag="VKJ77_09090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011356033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45465.1"
                     /translation="MTSLNAVNLNRLVVFAAVVEAGSLTAAADRLGIAKTMVSTHMQR
                     LEAEVGATLLMRTTRRVSVTEAGRTFYEASRQILSATEEAISALAQESGVLRGTLRVA
                     TPIDYGASVIAPMLVALQQRHPELKVELVSADRQVDLVAEAVDVAIRLGRLADSSHRA
                     VKIGGFVKWLVASPGFVARWGKPTTLEAVAKLPFIGMSALQKPLVAPLESTRGGKRTV
                     RFSAGFLADTAPTCRAAALAGGGVAYLTNFSIGEDVEAGRLVRLLPAWSSPPAGIHAI
                     FPSARYPVPKVRVFIDALKAHLETNGG"
     gene            complement(2472..>2669)
                     /locus_tag="VKJ77_09095"
     CDS             complement(2472..>2669)
                     /locus_tag="VKJ77_09095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009239842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monooxygenase"
                     /protein_id="HMC45466.1"
                     /translation="HLFDALGASAIGGGKALDRHWRNARAVSSHNPIVYKAKLVGDWS
                     INQKEPIYVWQIGAGPGPAST"
BASE COUNT          507 a          800 c          863 g          499 t
ORIGIN      
        1 gacccattcc tgcttcactc gatgtattcg cgctggcgac gaagaacgta tccgcccgcg
       61 cgagcagcgc ccggtcagca tcgttcagac gattggagat gagcggccgc tgtgtccctt
      121 cttccgcatc aaattcgaca ggcgtacggc tctggatgta cttcgcacaa ttgccgaagc
      181 tctggctgac ggcaagggtg atcgcctgat cgtcgatggc ggtaatgaca ccgttcacac
      241 gattgcgccg gcgagtagcg ggctgaatac cgagtccacc cagaaccgac ccgacctgcc
      301 acgtacgggc aagcggatcg cctgccagac ttcgcccgga tatacgcaac gtgtgttcgt
      361 ccggcgtcga gataaatccc ggcgcaccaa cccgcagcgt ggcccacggc tgccccgttt
      421 catcgactcc accgagcacc atgaacggct gctccgcaaa gaaccggcga tgctgatcgg
      481 gcatgtagtc gcgaatcccg cgacgcgcgt cgacgtccat ccgctcgcgc acgcccgcac
      541 gttcctgcgc ggcgagttca ccggcatgga acggcgattc cgctgcacgc cagcccgaag
      601 gcggcgcggt aacacgggcg ggtgcgggag tggacatgat gttctcgcta taggagagaa
      661 gcggagagaa gcgggtaccg tatgaagtat tgtatgaact atcacccggc ttcggcgagc
      721 aggccggcct tgctcgcggg cattggcagg aaacgcggca gtgcctcgac gcgcttcaac
      781 cacgcgcgca aatgcgggaa cggctccagc gagatgccgc cttcgggtgc atgcgcaatg
      841 tacgaataag cggctatgtc cgcgatggtc ggcgtctgcc cgaccgcgaa cggcttgtcg
      901 cgaaactcgg gatcgatgat cgcgaacagg tcttccgcca tcttcttggc agtagcgtaa
      961 tcctttggcg cgccgaacac agtcacgaga cgtgcggcac aggggccata cgcgatcttt
     1021 ccggctgcca gcgacagcca gcgctgcacc gccgccgcgc cgacaggatc gtccggcagc
     1081 cacgacgcat cgccgtattt gcgcgcgagg tagacaagga tcgcgttgga atcggtcagg
     1141 acaatatcgc cgtcttcgat caccggtact tcgccgaacg gattcagtgc cagatgcgcc
     1201 ggttggcggt tgtctcctgc tgccatgttc agttcgatgg tggtgaaagg cagatcgagc
     1261 agcgtcagga acagcttcgc ccggtgcccg tggcccgaga gcagcgtggt atggagacgt
     1321 atgggttgga gcggcttctg caatgtgggc acgatggata ctctgaaagg ggttgaaccg
     1381 gtgtttggat gcaacaagca taaagcgccg cacagggcat gagaagacgg ataatggtgg
     1441 ttagacaatc ctcttaaagt ggacaatcca tgaccagcct gaacgcggtt aaccttaacc
     1501 ggctggtggt ttttgcagcg gtggtcgagg cgggttcgct aacggccgcg gccgaccgtc
     1561 tcgggatcgc gaagaccatg gtcagcaccc acatgcagcg tctcgaggcc gaggtcgggg
     1621 cgaccctgct catgcgcact acgcgccggg tcagcgtgac ggaggcgggc aggaccttct
     1681 atgaagcgag ccggcagatc ctgagcgcga ccgaggaggc aatctctgca ctggcgcagg
     1741 agtcgggtgt gctgcgggga acgctgcgtg tcgccacgcc tatcgactat ggggcgagcg
     1801 tcattgcgcc catgctcgtc gcattgcagc agcgccatcc ggaactcaag gttgaactcg
     1861 tgtcggccga ccgtcaggta gatctggtcg cagaagcagt tgatgtcgcg atccggctcg
     1921 ggcggctggc ggactcgagt catcgcgcag tgaagatcgg cggcttcgtc aaatggctcg
     1981 tcgcaagtcc cgggttcgtc gctcgttggg gcaagccgac tacactcgaa gcggtcgcga
     2041 aattgccgtt catcggcatg tcagctttac agaagccgct ggttgcgccg ctcgaaagca
     2101 cccgcggcgg gaagcggact gtgcgcttca gcgcgggttt tctcgccgac accgcgccta
     2161 cctgtcgcgc agcagcattg gccggcggcg gcgtggctta cctgacgaat ttctcgatcg
     2221 gagaagacgt tgaagcggga cggctggtgc gcttgctgcc ggcgtggtca tcgccgcccg
     2281 cgggcattca cgccattttt ccttcggcac gttatccggt gccgaaggtg cgtgtgttta
     2341 tcgatgcgct caaggctcat ctggagacga acggcgggta ggccgataca ccgtgcaccg
     2401 gttgtgttca ctcggtggtc gctgcccgtt caagctcaaa cgctcaacca ggcgcgccac
     2461 catgctgaga cttacgtgga tgcgggtccc ggacctgcgc cgatctgcca gacatagatg
     2521 ggttctttct ggttgatcga ccagtcgcca acgagtttgg ccttgtacac gatcgggttg
     2581 tgcgacgaga ccgcgcgtgc attgcgccaa tgacgatcaa gcgccttgcc gccgccaatg
     2641 gccgatgcac ccagcgcatc gaaaagatg
//
LOCUS       DATGBK010000643         2650 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_146625, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000643 DATGBK010000000
VERSION     DATGBK010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146625"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..414)
                     /locus_tag="VKJ77_09100"
     CDS             complement(<1..414)
                     /locus_tag="VKJ77_09100"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="choline/ethanolamine kinase family protein"
                     /protein_id="HMC45467.1"
                     /translation="MQMKVLGAAASDTERDIENVLRSVQPWAGRSLRYAPVSGGISNT
                     NWRVWVDDEPASFFVKIPGRGTEQFIDRKAAFAASKQAELIGIGPRLYDYAAAQDVEI
                     NDFVDGRTTCSNRDFLERSVRSSVMGLYRTLHASPL"
     gene            complement(454..1416)
                     /locus_tag="VKJ77_09105"
     CDS             complement(454..1416)
                     /locus_tag="VKJ77_09105"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="HMC45468.1"
                     /translation="MKAPGSASTDSERAAELALGSIEAWRHRTIGYERAVMPVMSPVH
                     RAVASDCWRVTLDDDTAFFMKVINRDLIEPVDVAATYRAADAAAARSLTPAPRFLIES
                     AGAAVFDLLDAGWETARLDDLSRPDVLAKLLEAKRAINTLAPFERDTNVFDRIDWLAH
                     EANQRRVPLPSDVLPLIAIAARMGHAIQASGVDRCPCHADGTASNVMLHEDGRLQLVD
                     FDEAANTDPLFDVAVTLNEILSFESEWPGALEMAQGRVTDDALNRCRLYAFGDDLRWG
                     LWGLLMDAGSPRRSIEFLKYAQWRLLRCRMALDRMDLDEMLSHV"
     gene            complement(1485..>2650)
                     /locus_tag="VKJ77_09110"
     CDS             complement(1485..>2650)
                     /locus_tag="VKJ77_09110"
                     /inference="COORDINATES: protein motif:HMM:NF006772.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HMC45469.1"
                     /translation="EARDAFAALLEAAGAQVRTDSVGNQYGIFRLAASEDAPLVMMGS
                     HLDSQPQGGRFDGVLGVLGALETGRRLMQAKREGVVFNADFCAVNWTNEEGARFRPSL
                     LGSGTFSGRINAEDALASRDDDGLTLAEALDAIGYLGTDKPPPVPACYVELHVEQGAI
                     LETEGVPIGIVTRNWGAAKMDVCFHGEQAHTGPTKMQSRRDALFAAAQTICEVRNIAD
                     RWPDQIHTSVGRLVVQPNSPNVVPARADLSIELRAVDDGILRSAEEMATQAIQKAAVK
                     ANVRVDVSSRTARPIRTLPAALIDLIKLCTAETGHIAREIDTVSGHDALSLLDVCPTG
                     LIFVPSVGGIAHNEREETHPDDIERGMAVLTRVARRLCQSSGDPKQAAMQEAF"
BASE COUNT          502 a          881 c          793 g          474 t
ORIGIN      
        1 cagcggcgaa gcatggagcg tacggtacaa acccatgacc gacgagcgca cgctacgctc
       61 gagaaagtcg cggttggagc acgtcgtccg gccgtcaaca aagtcgttga tctcgacgtc
      121 ttgcgcggcg gcgtaatcgt agagacgcgg gccaatgcca atcagctcgg cttgcttgct
      181 cgcggcaaac gcggctttcc ggtcgataaa ctgctccgtg ccgcgccccg gaatcttgac
      241 aaaaaaactc gcgggttcgt catcaaccca gacccgccag ttcgtgttgc tgatgccgcc
      301 ggaaacgggc gcgtaacgca gcgaccgccc ggcccacggc tgtaccgaac ggagtacatt
      361 ttcaatgtca cgttcggtgt cgctcgcagc cgctcccaga accttcatct gcatgatcgt
      421 cgggcctcgt gaatgatgtc cacgccgcgg ccgtcacaca tggctcagca tctcgtcgag
      481 atccatgcgg tcgagcgcca tgcggcagcg gagcagcctc cattgtgcgt atttcaaaaa
      541 ttcgatgcta cggcgaggcg aaccagcgtc catcaacagg ccccataagc cccagcgcag
      601 atcgtcgccg aacgcgtaca ggcgacagcg attgagggca tcgtcggtta cccgcccttg
      661 cgccatttcc agcgccccgg gccattcgct ttcgaagctc agtatttcgt tcagcgtgac
      721 ggcgacgtcg aacagcgggt ccgtgttggc ggcttcgtcg aagtcaacca gttgcagccg
      781 accgtcctca tgaagcatca cgttggaggc ggtgccatcg gcgtggcaag ggcaacggtc
      841 cacgcccgac gcctggatcg cgtgtcccat gcgcgcggct atcgcaatca gcggcaagac
      901 atccgatggc aaaggcacgc ggcgctggtt ggcctcgtgc gccagccaat cgatcctgtc
      961 gaagacattc gtgtcgcgct cgaacggcgc cagcgtgttg atggcccgct ttgcctcgag
     1021 cagcttcgcg agcacatcgg gacgcgacaa gtcgtccaga cgagcggttt cccatccggc
     1081 gtcgagcagg tcgaagaccg cggccccggc gctttcgatc agaaagcgtg gcgcgggcgt
     1141 cagcgaacgg gccgccgcag cgtccgccgc acgataggtc gcggccacat ccacgggttc
     1201 gatcagatca cgattgatca ccttcatgaa gaaggcggtg tcgtcgtcga gcgtcacgcg
     1261 ccagcaatcg cttgccaccg cacgatgaac cggcgacatc acgggcatga ccgcacgctc
     1321 gtagccgatc gtccgatgcc gccacgcctc gatcgaaccg agggcgagtt cggccgcgcg
     1381 ctccgaatcg gttgacgcag atcctggtgc tttcatgaaa tcacgctcct cggatgaacc
     1441 tggtgagccc catgccgccg aattttcaag ctaaggaaaa cgggctaaaa cgcttcctgc
     1501 atggcggcct gcttcggatc gcccgacgac tggcatagac gccgggcaac ccgcgtgagg
     1561 accgccatgc cccgctcgat gtcatctgga tgcgtttctt cgcgctcgtt gtgcgcaatg
     1621 ccgcccacgc tcggaacgaa gatcagcccc gtcggacaaa cgtccagcag gctgagggca
     1681 tcgtgaccgg acaccgtatc gatctcgcga gcgatgtggc cggtctcggc cgtgcagagt
     1741 ttgatcaggt caatgagcgc ggccggcaag gtgcggatcg gccgcgcagt ccggctgctg
     1801 acatcgaccc tgacgttggc tttcacggcc gccttctgga tcgcctgcgt agccatttcc
     1861 tcggcgcttc tcaggatgcc gtcgtcgacc gcgcgcaact cgatcgacag atcggcacgc
     1921 gcaggcacca cattcggcga atttggctgc acgaccagcc ggccgacgga ggtatgaatc
     1981 tggtccggcc accggtccgc aatattgcgt acctcgcaga tggtttgcgc agcggcaaac
     2041 aacgcgtcgc ggcgcgattg catcttcgtt ggacccgtat gcgcctgctc cccgtggaag
     2101 cagacatcca tcttggccgc gccccagttg cgcgtgacga taccgatggg cacgccttcc
     2161 gtttccagga tcgcgccctg ctccacatgc aactcgacat agcaggccgg caccggcggc
     2221 ggtttgtccg tgccgagata accgatcgca tcaagcgcct ctgccagcgt caagccatcg
     2281 tcgtcgcggc tcgccagtgc gtcctccgcg ttgatacgac cggaaaacgt accgcttccg
     2341 agcaggctgg ggcgaaagcg tgcaccctcc tcgttggtcc agttgaccgc acagaaatcc
     2401 gcgttaaaga caacaccttc acgtttcgcc tgcatcaggc gacgtccggt ttcgagcgca
     2461 ccgagcacgc ccaacacccc gtcgaagcga ccgccttgcg gctgactgtc cagatgtgag
     2521 cccatcatga ctagcggggc atcttcactc gcggccagac gaaaaatacc gtactggttg
     2581 ccgacgctgt cggtgcgcac ttgcgccccg gcggcctcaa gcagggccgc gaatgcatca
     2641 cgggcttcac
//
LOCUS       DATGBK010000644         1968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_7630, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000644 DATGBK010000000
VERSION     DATGBK010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7630"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..673
                     /locus_tag="VKJ77_09115"
     CDS             <1..673
                     /locus_tag="VKJ77_09115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HMC45470.1"
                     /translation="KNAYWGNLLRGESVFPHYRIYRQALLDIYGAEFPSLENAPEIRI
                     GVSHLPRWLGARSAVAAGLIAYNIEKYVRKKLHPTLGQSLGFHPEFVKAQECATVEDL
                     ADLILQSSCTPPFTPVMRRHGRPVLDGGMVDNVPVGALDASPGLVLVMVTRVYPRPQM
                     FVVEHGANRDQRRVYVQPSRKVPISAWDYTSPSLMRPAYDLGRTDGEQFLTRLPELLS
                     AAAHL"
     gene            700..1176
                     /locus_tag="VKJ77_09120"
     CDS             700..1176
                     /locus_tag="VKJ77_09120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HMC45471.1"
                     /translation="MTKHHKYTLQVVWTGDQGSGTSRYDAYSRDHLVRAANKPAIEAS
                     SDPAFRGDATRHNPEELFVASLSSCHMLWYLHLCAVNGIAVTGYVDDPIGTMEESKQG
                     SGRFTDVVLRPQVTIGAGGDVKLAGRLHEEAHKFCFIANSVNFPVRCEPSTDISTI"
     gene            complement(1186..>1968)
                     /locus_tag="VKJ77_09125"
     CDS             complement(1186..>1968)
                     /locus_tag="VKJ77_09125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase family protein"
                     /protein_id="HMC45472.1"
                     /translation="KAGGHIELDACTERGIAVLEGNGSPIAPAELTWALIMAAQRRIP
                     QYVANLKQGAWQQSGLKTSALPPNFGLGQVLRGQTLGIWGYGKIGQLLAGYGKAFGMK
                     VVVWGREHSQAAARADGVDVAESREALFEQSDVLSLHLRLNDETRGIVTAADLMRMKP
                     TALFVSTSRAELLEENALLNALHHNRPGMVAIDVFESEPILQGYSLLRMENVICTPHI
                     GYVERESYELYFTAAFKNILAFDAGDTSSVANPEALVGGRRR"
BASE COUNT          366 a          631 c          592 g          379 t
ORIGIN      
        1 gaaaaacgcg tattggggca atttgctacg cggcgaatcg gtgttcccgc actatcggat
       61 ctaccgccag gctctactcg atatctacgg cgcagagttt ccatcgctgg aaaacgcgcc
      121 ggagattcgt atcggcgtat cgcatttacc gcgttggctc ggcgcacgga gcgcggtggc
      181 cgcgggactg atcgcctata acatcgaaaa gtacgtgcgc aagaaactgc atcccacgct
      241 cggtcagtcc ctcggtttcc atccggaatt cgtgaaggcg caggagtgcg cgacggtcga
      301 agacctcgcc gacctgatcc tgcaatcgtc gtgtacgccg ccgttcacgc cggtgatgcg
      361 ccggcacggc cggcctgtgc tcgacggcgg catggtcgac aatgtgccgg tcggcgcgct
      421 ggacgcttcg ccgggactgg ttctcgtgat ggtgacgcgc gtgtatccgc gaccgcagat
      481 gtttgtcgtg gagcacggcg cgaaccgcga ccagcggcgc gtttatgtgc agccatcgcg
      541 gaaggtgccg atttcggcat gggattacac gagtccgtcg ctgatgcggc ccgcgtacga
      601 cctgggccgt accgacggtg agcaattcct gacacgctta cccgaactgc ttagcgcagc
      661 tgcgcatctc tagcaactct aaagaggagt gttgaaccga tgaccaaaca ccacaaatac
      721 acgctgcaag tcgtgtggac gggcgatcag ggctccggca cctcacgcta cgacgcgtac
      781 tcccgcgatc acctagtgcg tgcagcgaac aaaccggcca tcgaagcatc gagcgatccg
      841 gcgtttcgcg gcgacgccac gcgccacaac ccggaagagt tgttcgtcgc gtcactttcg
      901 tcgtgccaca tgctctggta cctgcacctt tgcgcggtga atggcatcgc ggtcacgggt
      961 tacgtggatg accccattgg cacgatggag gaatcgaaac aaggaagcgg ccgcttcacc
     1021 gacgtcgtcc tgcgcccgca agtgacaatt ggcgcgggcg gtgacgtgaa gctggccggc
     1081 cgtttgcacg aggaagcgca caagttctgc tttatcgcga actcggtcaa cttccccgtc
     1141 cgatgcgagc cgtccacgga catttccacc atctgactaa cttgactatc gccggcgtcc
     1201 gcccaccagc gcttccggat tggcgacact cgatgtatcg ccggcatcga aggcgaggat
     1261 gttcttgaac gccgccgtga agtagagctc gtagctctcg cgctccacgt acccgatgtg
     1321 cggcgtgcaa atgacgttct ccatgcgcag caggctataa ccctgcagga tcggctcgct
     1381 ctcgaataca tcgatggcaa ccatccccgg ccggttgtga tgcagcgcat tgagcagcgc
     1441 gttttcttcg agcaattcgg cgcggctggt actcacaaac agcgcggtgg gcttcatgcg
     1501 catcaggtcg gcggccgtga caatgccgcg cgtttcgtcg ttcagccgca gatgcaacga
     1561 gagcacatcg ctctgttcga acagcgcttc ccggctctcg gcgacatcca cgccgtccgc
     1621 ccgcgcggca gcctgcgagt gctcgcggcc ccagaccacc actttcatgc caaacgcctt
     1681 gccgtaaccg gcgagcaatt ggccaatttt tccgtatccc cagatcccga gcgtctggcc
     1741 gcgaagcact tggcccaggc cgaaattcgg cggcagcgcg gaggtcttca gaccggactg
     1801 ctgccacgcg ccctgcttca ggttcgcgac gtactgcgga atccggcgtt gcgcggccat
     1861 gatcagcgcc caggtgagct cggccggcgc gatcggtgaa ccgttacctt cgagcacggc
     1921 gattcctcgc tcggtacatg cgtcgagttc tatatggccg cccgcctt
//
LOCUS       DATGBK010000645         1566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_216276, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000645 DATGBK010000000
VERSION     DATGBK010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216276"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1146)
                     /locus_tag="VKJ77_09130"
     CDS             complement(<1..1146)
                     /locus_tag="VKJ77_09130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45473.1"
                     /translation="MDSDEVNEDRPRRRRRRRRRSTEDVAPAVESLQLGALIRQLAGL
                     SIFGLFFLLIVVAPLPMGANRDWAWSPLIVVIGVLALLCAAGIGGREGFKISPEESTS
                     LLVLIGCFLFFVVVALVQMSPLAPLSPSAPFYAKAGELLGQSLVAVPTLAVDATREAL
                     LKCFGCAAIFMMARVLFHDQRWARLLVMIFLLSAVIVVTYALYMSVTTHSCYVGSYLK
                     KMGQYNFATDRCLASGTFVGSNNFGCFCGMAFVATLGLLFDGQQPRRDREEREYGEEE
                     NPIAEWFSGRRVMLVALSLYFLGGLMLSASRGGAGATVIGAIVLGCLLLRGRSRAMRR
                     WAVVGGGLLAVLILVVAGSAFLNKLSLLLDAGNLNRVVIWRASVEALL"
     gene            complement(1128..>1566)
                     /locus_tag="VKJ77_09135"
     CDS             complement(1128..>1566)
                     /locus_tag="VKJ77_09135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45474.1"
                     /translation="LTGNIDVSPDIRTAWLQRSKADLELGLARAPARTMDWLRLGTTM
                     QSLDGPSRAIIGPLMMSIKTGPWLEAAFFSRLRLIVDNWAYFSDEQKVEIRSAVSGMW
                     RRSLDQRIFAWNVLNPVDELIIRNLLRDEPGAQEQLTVWILTK"
BASE COUNT          366 a          511 c          436 g          253 t
ORIGIN      
        1 gagcagtgcc tcgaccgacg cgcgccagat gacgacgcgg ttcaggtttc cggcgtccaa
       61 caacaacgaa agcttgttca gaaacgcgct tccggcaacg actaaaatca ggaccgccaa
      121 caatccgccg ccgaccaccg cccacctccg cattgcgcgc gagcgtccac gcagcagcag
      181 acagccgaga acgattgcgc cgatcaccgt tgcgccagct ccaccgcgcg acgccgacag
      241 catcaggccg ccaaggaaat agagcgacaa cgccaccagc atgacccgac ggcccgagaa
      301 ccactcggca atggggtttt cttcttcgcc gtactcccgc tcttccctgt cgcgacgcgg
      361 ctgctgccca tcgaacagca gcccgagcgt agcgacgaaa gccatgccgc agaagcatcc
      421 gaaattgttg ctgcccacga acgtgccgga cgccagacag cgatccgtgg caaaattata
      481 ttgccccatc ttcttcagat agctcccgac gtagcaggag tgcgtcgtca ccgacatgta
      541 gagggcatag gtcacgacga tcacggcgct caggagaaaa atcatgacca gcagcctcgc
      601 ccaacgctga tcgtgaaaga gcacacgtgc catcatgaaa atggccgcgc agccgaagca
      661 cttcagcagc gcctcacgcg tggcatcgac ggccaacgtc ggaacggcaa cgagcgattg
      721 tcccagcagc tcacctgcct tcgcatagaa cggcgcgctg ggcgagagcg gggccaacgg
      781 cgacatctgt acaagcgcca ccactacgaa aaacaggaaa caaccgatca gcaccaacag
      841 cgatgtgctt tcctcgggtg agatcttgaa tccctcacgt ccgccgatac ccgctgcgca
      901 aagcagggcg agaacaccga tcacgactat taatggcgac caggcccagt ctcgatttgc
      961 gcccattgga agcggtgcga ccacgatgag cagaaagaaa agcccaaaga tgctcaaacc
     1021 cgcgagttgc cggatcagcg cgccaagctg caacgactcc actgccggcg caacgtcctc
     1081 cgtgctgcgc cgccgccgcc ttctgcgccg gcgcggccgg tcctcgttta cttcgtcaga
     1141 atccataccg taagctgctc ctgggcgccg ggctcgtcac gcagcagatt gcgaatgatg
     1201 agttcatcga cgggatttaa tacattccag gcgaagatcc gctggtctag ggagcggcgc
     1261 cacattcctg agacggccga ccgtatctcg accttttgct catcggagaa gtaagcccag
     1321 ttgtcgacga tgagtcgcag ccggctgaaa aacgcagctt caagccaagg gccagtcttg
     1381 atcgacatca tcagaggtcc gatgattgcg cgagatgggc catcgaggct ttgcatcgtt
     1441 gtcccgagac gcagccagtc catcgtgcgg gcgggagccc gggccaatcc aagttcgaga
     1501 tcggctttcg agcgttgaag ccaggccgtg cgaatatccg ggctgacgtc gatgttccct
     1561 gtcaac
//
LOCUS       DATGBK010000646         1935 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_262633, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000646 DATGBK010000000
VERSION     DATGBK010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262633"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..979)
                     /locus_tag="VKJ77_09140"
     CDS             complement(<1..979)
                     /locus_tag="VKJ77_09140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HMC45475.1"
                     /translation="MNTYARLPVAFTHGQGVWLWDAQGKRYLDALGGIAVNTLGHAHP
                     RLVKTLSAQAGRLIHSSNIYQITEQENLADKLAAISGMDKIFFCNSGCEANEAAIKIA
                     RLYAKGKGVENPAIVVMEKAFHGRTLATLSATGSRKVQAGFEPLVSGFVRVPYDDVEA
                     VRQVAQHNRNVVAVLVEPIQGEGGINIAHLEYLRDLRALCDQYQWLLMLDEIQCGLGR
                     TGKWFFYQHAGFHPDVVTLAKGLAAGVPIGACLAKSAAAELFKPGSHGSTFGGNPFAC
                     AVALTTLEIIEHDQLLDNATKVGDAIRAGLTTAMAGIKGVVAIRGMGLML"
     gene            complement(1249..1446)
                     /locus_tag="VKJ77_09145"
     CDS             complement(1249..1446)
                     /locus_tag="VKJ77_09145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45476.1"
                     /translation="MSSSTMIKYGFRIRTRDGLIVDNLLIHGRDEIDAERKLRQMYQH
                     CKILECTVRKTGKSVFLAAAR"
     gene            complement(1673..>1935)
                     /gene="rpsT"
                     /locus_tag="VKJ77_09150"
     CDS             complement(1673..>1935)
                     /gene="rpsT"
                     /locus_tag="VKJ77_09150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003812908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HMC45477.1"
                     /translation="ANTDSARKRARQAEKQRRHNGSLRSTLRSAIKDVNKAIAGGDKA
                     GAKKALVQSSSIVDRIADKKIIHKNKAARHKSRLAAAIKAMA"
BASE COUNT          344 a          586 c          583 g          422 t
ORIGIN      
        1 ccagcatcag gcccatgccg cggatcgcga cgacaccctt gattccggcc attgccgtgg
       61 tcaaaccggc gcggatggca tcgccgacct tggtcgcgtt gtcgagcagt tggtcgtgct
      121 cgatgatttc gagcgtggta agcgcgacgg cgcaggcgaa ggggttgccg ccgaaagtgg
      181 aaccgtgact gcccggcttg aacaactcgg ccgcggcgct cttggcgagg caggcgccga
      241 tgggcacgcc ggcggcgagg cccttggcca gggtgaccac gtcgggatga aagcccgcgt
      301 gctgatagaa gaaccatttg ccggtgcggc cgagaccgca ctggatctca tccagcatca
      361 gcagccactg gtactgatcg cacagcgcgc gcaggtcccg caggtactcc aggtgcgcga
      421 tgttgatgcc gccttcgccc tggatcggtt cgacgaggac ggcgaccacg ttgcggttgt
      481 gctgcgccac ctgacgcacc gcttccacgt cgtcgtaagg cacgcgcacg aagccggata
      541 ccagcggctc gaaaccggcc tgcaccttgc ggctgccggt ggccgagagc gtggccagcg
      601 tgcgcccatg aaatgctttc tccatcacga cgatggcggg attctcgacg cctttcccct
      661 tggcgtacag ccgcgcgatc ttgatcgcgg cctcgttcgc ctcgcagccg gaattgcaaa
      721 agaaaatctt gtccatgccg ctgatcgctg cgagcttgtc ggcaagattt tcctgctcgg
      781 tgatctgata gatgttggag ctgtgaatca gcctgcctgc ctgagcgctg agcgttttca
      841 ccagccttgg gtgggcatgg ccgagcgtgt tcacggcgat gccgccgagg gcgtccaggt
      901 aacgcttgcc ctgcgcgtcc cacagccaga cgccctggcc gtgggtgaag gccacgggca
      961 gtctggcata ggtgttcatt acgtgcgaca tcgccacgtc ctaaaaggcc gtttcagcac
     1021 gactgaatga gcctccgaat taggggaaca agagaggcca aggaagcggt gggccctttc
     1081 cgttcccccc tcggtcccct cattttgtaa caggttctaa aacaaaacgc acacggcggc
     1141 aaatgccgcc gtgtgctcgg atttccgata aattatttta tcacactgcc acaggcatca
     1201 gcatagcgcc agcgccgcgg ctgcgttcgt gaaatggtgc gcttgcgtct atcttgctgc
     1261 ggcgaggaag acgctcttgc cggttttgcg caccgtgcat tcgagtatct tgcaatgctg
     1321 atacatctgg cgcagcttgc gctcggcatc gatttcgtcc ctgccgtgta tcaacaggtt
     1381 atccacaatc aatccatcgc gcgtgcgtat gcggaaccca tattttatca tcgtcgaaga
     1441 tgacacaaag ccccctcatt caagcgctta agggatatgt agcatatgcc ttctatcaac
     1501 tcaacgcaaa tttatgttcc gacggtattt tttctcattt cccgcgattt tgcccggaat
     1561 ttgtgcgcag gtgcgccagt ctatcgccgg accctgacgc gcgcgggaac gccggaaaca
     1621 aaacggccgg cgttaagcca gccgcattgt ctttgttcgt gcagttcgat atttaagcca
     1681 tcgccttgat ggcggcggcg aggcggctct tgtggcgcgc ggccttgttc ttgtggatga
     1741 tcttcttgtc ggcgattcgg tcgacgatgc tcgaagactg gacgagcgcc ttcttcgcgc
     1801 cggctttgtc gccgcccgcg attgccttgt tcacgtcctt gatcgccgag cgtagcgtcg
     1861 agcgcaggct gccgttatgc cgccgctgct tctcggcttg gcgggcacgc ttgcgcgcgg
     1921 aatctgtatt ggcca
//
LOCUS       DATGBK010000647         3696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_77272, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000647 DATGBK010000000
VERSION     DATGBK010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3696
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77272"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(88..591)
                     /gene="def"
                     /locus_tag="VKJ77_09155"
     CDS             complement(88..591)
                     /gene="def"
                     /locus_tag="VKJ77_09155"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010100727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HMC45478.1"
                     /translation="MALLNILKYPDKRLHKVAKPVEVVNDRIRRLVADMAETMYAAPG
                     VGLAATQVDVHERVIVIDTSDTHDRLQAFINPEIVWSSDEKKDHEEGCLSVPGIYDFV
                     ERPEKVRVRALNEKGETFEIDCDELLAVCIQHEMDHLMGRVFVEYLSSLKQTRIRGKM
                     RKLEKAL"
     gene            804..2117
                     /gene="dprA"
                     /locus_tag="VKJ77_09160"
     CDS             804..2117
                     /gene="dprA"
                     /locus_tag="VKJ77_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HMC45479.1"
                     /translation="MTPFLLPTADAKPHLGETDLQDISAWLQLANASGLPPIALRALL
                     AEFGGPQAVLNQSFSALAAIAGEKAAYAVLGAPPRSELGSFDECLARTLEWASVPGNR
                     IVTLADSAYPPALLTMPDPPPLLYVKGRLDLLQARAVAIVGSRSATPQGTDDARRFAQ
                     ALSDAGLVVVSGLALGIDGAAHRGGLSGPGGTIAVIGTGADLVYPPLHHALAHEIATN
                     GTIVSEWPLGTPARPANFPQRNRLIAGLASGVLIVEAAMRSGSLITARFANEMGRDVF
                     AIPGSIHAPLSRGCHRMIKQGAKLVETPEDILEEFGFTVQSEAAAASVSKPRRRGKAR
                     PAEDTSTEPAASEFALELQDAPGSGSIPRAKPASASWASASLKPANPEAERLLDALGH
                     SPATLEILAERTDMDGATLQSLLLQLELSGRIGTLPGGRFARLER"
     gene            2202..2579
                     /locus_tag="VKJ77_09165"
     CDS             2202..2579
                     /locus_tag="VKJ77_09165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008917976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HMC45480.1"
                     /translation="MPALNLDTDADQIAERLASAGTLLVACLCAEWCGTCRDYRESFN
                     LLADAHPDICFAWIDIENQADRFDDLDVENFPTVLIEDAVTTRFFGTVLPQTSIVARM
                     LTDLSALPGVVGAPKIRPALVAA"
     gene            2816..>3696
                     /locus_tag="VKJ77_09170"
     CDS             2816..>3696
                     /locus_tag="VKJ77_09170"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HMC45481.1"
                     /translation="MSKALIIAEKPSVANDIARALGGFTKHDEYYESEDYVLSSAVGH
                     LLEIAAPEEFEVKRGKWSFANLPVIPPHFDLNPIAKTESRLKVLTKLLKRKDVDRLIN
                     ACDAGREGELIFRLIAQHAKAKQPVQRLWLQSMTAGSIRDGFANLRSDADMQPLADAA
                     RCRSEADWLVGINGTRAMTAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIRRFVSRD
                     YWEVRAEFIAAKGMYEGRWFDPKFKRVEGDPEQRDSRLWSLPAAETIVAACRGKTGTV
                     TEEAKPTTQMSPLLFDLT"
BASE COUNT          729 a         1143 c         1102 g          722 t
ORIGIN      
        1 ggtgttccag caaatacgac acgcagcgat tgagtcatcg attcagcaac ctgcaaattc
       61 cagcatccgt cttagtgaat caacgcgtca cagcgccttt tcgagctttc tcatcttgcc
      121 gcgaattcgc gtctgcttaa gcgacgacag atattcgaca aacacgcgcc ccatcagatg
      181 atccatctca tgctggatgc acacggcgag cagttcgtcg cagtcgatct cgaacgtctc
      241 gcccttctcg ttcagcgcgc gcacgcgcac cttttccggc cgctcgacga agtcgtaaat
      301 gcccggcacc gacaagcagc cttcctcgtg atccttcttc tcgtcgctcg accagacgat
      361 ctccggattg atgaaggcct gaagccgatc gtgcgtgtcc gatgtgtcga tcacgatcac
      421 gcgttcatgc acgtccacct gggtcgcggc aaggccgacg ccaggcgccg cgtacatggt
      481 ttcagccatg tcggcgacga gcctgcgaat ccggtcattg acgacctcta cgggctttgc
      541 gaccttgtgc agccgcttgt ccgggtactt gagtatgttg agcagagcca tgattcagat
      601 tatcgacgca cgccgcagcg cgcgatagtc ggccattcgg ccaggttgta aaagagtgcc
      661 ggtatcgaga agatgattgg gccgaaacgc ggcgcttcaa cgtcgtttca gtgccgctcg
      721 tggggcggca acgcgttgtc cgatcagcca gcaacagggc cgttcggcaa tcctttcgta
      781 tttcggaata tgaaaatttt aacatgacgc ctttcctgtt gccgacggcc gacgccaagc
      841 cccatctggg tgaaaccgat ttgcaggata tttcagcgtg gctgcagctc gcgaatgcga
      901 gcggtttgcc gcccatcgca ctgcgtgcgt tgcttgccga attcggcggt ccgcaagcgg
      961 tgttgaacca gtcattcagc gcgctcgcgg caatcgccgg agagaaagcg gcctatgccg
     1021 tgcttggcgc tccgccgcgc tcggaactcg gctcattcga cgaatgcctt gcacgcacgc
     1081 tcgagtgggc gtcggttccc ggcaacagaa tcgtcacgct tgcggattcc gcgtacccgc
     1141 cggcgcttct gaccatgccc gatccgccac cgctgctata tgtaaaggga cggctggacc
     1201 tgcttcaggc ccgggcggtt gcgatcgtcg gcagccggag cgcaacgccg caaggcactg
     1261 acgacgcgcg ccgcttcgcg caagcccttt cggacgcggg cctggtggtt gtatcggggc
     1321 tcgcgctggg gatagacggc gcggcgcatc gcggcgggct cagcggtccc ggcggcacga
     1381 ttgcggtcat cggaacgggt gcggatctcg tctatccgcc gctccaccac gcgctggcgc
     1441 acgagattgc gacgaacggc acgatcgtgt cggaatggcc actcggtacg cctgcccggc
     1501 cggcaaattt tccgcagcgt aaccggttga tcgcggggtt ggcgagcggc gtgctgattg
     1561 tcgaagcggc aatgcgctcg gggtcgctga tcaccgcccg gttcgccaac gaaatgggac
     1621 gcgatgtatt cgcgattccc ggatcgatcc acgcgccgct atcgcgcggg tgtcatcgga
     1681 tgatcaagca gggggcgaag ctcgtggaaa cgcccgaaga tattcttgaa gagttcggtt
     1741 ttacggttca gagcgaagcg gcggcggcct ccgtttcgaa gccgcgaagg cgtgggaaag
     1801 cgcgtccagc ggaagatacc agcaccgaac cggctgccag cgaattcgcg ctggagcttc
     1861 aggacgcgcc gggctcaggt tccatccctc gagccaaacc cgcgagcgcg tcttgggcgt
     1921 ccgcatctct aaaacctgcc aaccccgaag ccgagcgcct gctagatgcc ctcgggcact
     1981 cgcccgcgac gcttgaaatt cttgccgagc ggaccgacat ggatggcgcg acgttacaaa
     2041 gcctgctgct gcagcttgaa ctgtcggggc ggatcggcac cttgccggga ggacgatttg
     2101 cccggcttga acgctgattt ttcgacgcca tgctacattc gccacaaaat ccgctgcctg
     2161 caccagcaac aaattactga cgaaaaggac tgcaaggaac catgcccgcg ctgaatctcg
     2221 acaccgacgc cgatcagatt gccgagcgtc tggccagcgc aggcacgctg ctcgtcgcct
     2281 gcctgtgcgc cgaatggtgc gggacgtgcc gcgattatcg ggagagtttc aacctgctcg
     2341 ccgatgccca tccagacatc tgctttgcgt ggatcgacat cgaaaaccag gcggatcgct
     2401 tcgatgacct cgatgtggaa aattttccga ccgtcttgat cgaggacgct gtgacaaccc
     2461 gtttttttgg aacggtgctg ccgcaaacgt ccattgttgc gcgcatgctg acggacttga
     2521 gcgcgttgcc gggtgtggtc ggcgcaccga agatccggcc cgcattagtc gccgcgtaaa
     2581 tcgaactgaa ccggctataa caacatgtgc aacccggcgc actcgtaagc tgaaacggct
     2641 ttcgcgcttg catcacaaag cacccacatt caccgttcgg caccccgcgt ttcaccaaat
     2701 gccagaccgc gcgccgcacg ccatatgcta taaagcggac gttaacgggt ccgaaccgcg
     2761 gtggcgcaag ctgcccaaac ccggcctcat gccagtccct aactagaatc gagtcatgtc
     2821 caaagccctg atcatcgctg aaaagccttc tgtcgcgaac gacatcgcgc gcgctttggg
     2881 cggcttcacg aagcatgacg aatattacga aagcgaagac tacgtgctgt cgtcggctgt
     2941 cggccacttg ctcgaaattg ccgctcccga ggaattcgag gtcaagcgcg gcaaatggag
     3001 tttcgccaat ttgcccgtta ttccgccgca tttcgacctg aatccgatcg cgaaaaccga
     3061 atcacggctc aaagtgctga cgaagctgct caagcgcaag gatgtcgacc gactgatcaa
     3121 cgcctgcgac gcggggcgcg aaggtgaact gatttttcgc ctgatcgcgc agcacgcaaa
     3181 ggccaagcag ccggtacaac gtctctggct tcagtcgatg accgccggtt ccatccgtga
     3241 cggtttcgca aacctgcgca gcgacgccga catgcagccg ctcgccgatg ccgcccgttg
     3301 ccgctcggaa gccgactggc tcgtaggcat caacggcacg cgtgcgatga ccgcattcaa
     3361 cagcaagggc ggtggttttt tcctgacgac cgttggccgc gttcagacgc caacgttgtc
     3421 tatcgtcgtg gaacgcgagg aaaagatccg tcgcttcgtg tcgcgcgatt attgggaagt
     3481 gcgtgcggaa tttatcgccg cgaagggcat gtacgaaggc cgctggttcg atccgaaatt
     3541 caagcgcgtc gagggcgatc cggagcagcg cgactcgcgg ctctggagct tgccggctgc
     3601 tgaaacgatt gtcgcggcct gccgtggcaa gaccggtacg gtcactgaag aagcgaagcc
     3661 gaccacgcag atgtcgccgt tgctgttcga cctgac
//
LOCUS       DATGBK010000648         4825 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_100474, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000648 DATGBK010000000
VERSION     DATGBK010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4825
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100474"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..890
                     /locus_tag="VKJ77_09175"
     CDS             <1..890
                     /locus_tag="VKJ77_09175"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC45482.1"
                     /translation="IEIDVRLLNHRVFGPVFEFKTAGALGLPDAMHEFSFPPLNPVLA
                     RDLVMRSPRARELPAENLLVALTALSQAVCEIEQIVALRLTVRVTRQAVVVYEPHLTL
                     AAHRTPLAIQPYPRQLEETLDWNGLLITVRPIRPDDEAAHSAFVAAMTPDDLRLRFFS
                     SVRSFDHSQLARMTQIDYDREMAFIAVTGEHDAIETLGVARAIADPDNETAEFAVAVR
                     SDQKGKRLGLLLLTRIIAYCRSRGTRWLVGEALRENTGMIGLARRLGFEITATEDPGV
                     TGFRMRLTEADAQAGALPS"
     gene            complement(996..1541)
                     /locus_tag="VKJ77_09180"
     CDS             complement(996..1541)
                     /locus_tag="VKJ77_09180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45483.1"
                     /translation="MAKLLSDPEFQRFSELQQKQSSFTITSEEADELRDIVARAQQKR
                     DDRAAAMQSIETFIKQFDISADELFTADQIADAARNFGLIPAAKKERVLPPQLSFNGK
                     PYQWTTRALPDDIRVPLFEAFTSGASVKAFIATPKDATRCAATIARLERETNSTYADA
                     WLDELAVSRAQVDEALAKLPA"
     gene            complement(1749..2570)
                     /locus_tag="VKJ77_09185"
     CDS             complement(1749..2570)
                     /locus_tag="VKJ77_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC45484.1"
                     /translation="MQADDPTDADRYRAPALDKGLDILELLAEQKDGLTRAEITKSLG
                     RNASEMYRMLERLVARQYVVRSPAGDRYSLSLKLYALAHRHPPMNRLIAEALPVMQRF
                     ADRAEQSCHLAAYDRGNLLVIAQVDGPGTWGISVRLGARVGLIDTGSGRVILAFQNTE
                     QRAHMLTEHTRVKGESALDPLALENAYTQIRADGFLHKESQQTFGVMDVSFPLLGPSG
                     QAIATLTCPYLRRIDEYVAPSISEVSALLGEAAAALSMFREPDVEFSDSRDSSAA"
     gene            2765..3100
                     /locus_tag="VKJ77_09190"
     CDS             2765..3100
                     /locus_tag="VKJ77_09190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HMC45485.1"
                     /translation="MQTPHKPTDARLILQSPQDNCLIAGARLQAGERVEIEGEFVTLA
                     KTIDLGHKVARLALRTDEKVLRYGAIIGHVTSDVQPGEHLHTHNLESDYLPTYTHDAG
                     HAFVDHRDR"
     gene            3105..4394
                     /locus_tag="VKJ77_09195"
     CDS             3105..4394
                     /locus_tag="VKJ77_09195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HMC45486.1"
                     /translation="MTATTTPQLQGFLRADGRKGIRNVIAVAYLVECAHHVAREIVTQ
                     FRPAFDAFDDPAADREPPVHLIGFPGCYPNGYAEKMMERLTTHPNVGAVLFVSLGCES
                     MNKHYLVDAVRASGRPAEVLTIQEKGGTRSTIQNGIDWIRDVRATLAQQPKVPMALDE
                     LIVGTICGGSDGTSGITANPAVGRAFDALIDAGAACIFEETGELVGCEFHMESRAARP
                     ELGREIVACVDKAARYYSIMGHGSFAVGNADGGLTTQEEKSLGAYAKSGASPIVGIVK
                     PGDIPPVGGLYLLDVVPDGEPRFGFPNISDNAEIGELIACGAHVILFTTGRGSVVGSA
                     ISPVIKVCANPATYRNLSGDMDVDAGRILEGRATLDEVGREVFDATLSVAAGAASKSE
                     SLGHQEFILTYKSFDPVGPACLPASATPRHAVPITSI"
     gene            4441..>4825
                     /locus_tag="VKJ77_09200"
     CDS             4441..>4825
                     /locus_tag="VKJ77_09200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC45487.1"
                     /translation="MNLMTGNPVVKKRKVGKTSLEVTALSLGSAPLGGLYHDLSEADA
                     QATVDVAWQSGIRFFDTAPHYGHTKAEHRIGDALRRYPREDFVLSTKVGRRFVPRTTP
                     YDGSEGWSDPLPFQAIYDYTYDGILR"
BASE COUNT          929 a         1469 c         1491 g          936 t
ORIGIN      
        1 ccattgaaat cgatgtccgc ttgctgaacc atcgcgtgtt cggacctgtg ttcgaattca
       61 agactgctgg cgcgctcggt ttgccggacg cgatgcacga gttctcgttt ccgccgctca
      121 acccggtgtt ggcgcgcgat ctcgtgatgc gttcgccgag ggcgcgcgaa cttcctgcgg
      181 agaatttgct ggtggcgttg acggccttgt cgcaggctgt ctgcgagatc gagcagattg
      241 tcgcgttgcg gttgacggtg cgcgtgaccc gtcaggcggt cgtggtgtat gaaccccatc
      301 tgacgctggc cgcgcatcgc acgccgctcg ccattcaacc gtatccgcgg caactggagg
      361 aaacgcttga ctggaacggc ttgctgatca ccgtgcgccc gatccgtccc gacgacgaag
      421 ccgcccacag cgctttcgtc gctgcgatga cgccggacga tctgcgtctg cgtttcttca
      481 gttccgtgcg cagtttcgat cactcgcaac tcgcccggat gacgcagatc gactatgacc
      541 gcgagatggc gtttatcgcc gtcacgggtg agcacgacgc tatcgagacg ctgggggtgg
      601 cgcgcgccat tgccgatccg gataacgaga cggccgagtt cgcggtcgcg gtgcgctcgg
      661 atcagaaggg caagcggctg ggactcttgc tgttgactcg gatcatcgcg tattgcaggt
      721 cgcgcgggac acgctggctg gtcggcgagg cgttgcgcga gaacaccggc atgatcggac
      781 tcgcgcgccg tttaggattc gagataacgg ccaccgagga tccgggggtg accggtttca
      841 ggatgcggtt gactgaggca gacgcacaag ccggcgcgct gccgtcgtga aggctatgaa
      901 gaccgtgcag gtgaagagcg ctggcatccg gccgccgtgg tgagcggcca gaaagtgtgc
      961 tgcaacgtgc ttgcccgcga ccgttgctct tcgaatcaag ccggcagctt tgccagcgct
     1021 tcgtcgacct gtgcgcgcga taccgccagc tcgtccagcc acgcatcggc ataagtgctg
     1081 ttggtttcac gctccagacg cgcgatcgtc gccgcgcaac gcgtagcgtc cttaggcgta
     1141 gcaataaacg ctttaaccga cgcgcccgac gtgaacgctt cgaacagcgg aacgcgaatg
     1201 tcgtccggca gggcgcgagt ggtccattga tacggcttgc cgttgaacga cagctgcggc
     1261 ggcagcacgc gttctttctt cgctgcggga atcaggccga aattgcgcgc ggcatcggcg
     1321 atctggtcgg ctgtaaagag ttcgtccgcg ctaatgtcga actgcttgat aaacgtttcg
     1381 atcgactgca tcgcggctgc gcggtcgtcg cgcttttgct gcgcgcgagc gacaatatcg
     1441 cgcagctcgt ccgcttcctc gctcgtgatc gtgaagctgg actgcttttg ctgaagttcg
     1501 gagaagcgct gaaattcggg atcggagagg agtttcgcca ttgccttgcg tagaaaaaga
     1561 cgcgaaacgt cgcgtggagc gacgatccgc tttttgagag ggtcgccatt ctaacgcgtc
     1621 gcgcggatct ggaacctggc gaatccacga accgaatgtt cccaacgaag cgaacggact
     1681 cttcctgccg gatcttctca gcgaattcgc ccaccgaatc tggcaccctc tgcaaccatc
     1741 ggcgacccct aagccgcgct cgaatcccgc gaatcactga attccacatc tggttcgcga
     1801 aacatcgaca gcgccgccgc cgcttcacca agcagtgcac tgacctcgct aatggaaggc
     1861 gcgacgtatt cgtcgatacg cctgagatac gggcacgtca gcgtcgcaat cgcctggccg
     1921 gacggcccga gcagcggaaa actcacgtcc atcacaccga aggtctgctg actctcctta
     1981 tggagaaaac catccgcgcg aatctgtgtg tacgcatttt ccagcgcgag cggatcgagc
     2041 gcggactcac cctttacacg cgtgtgctcg gtcagcatgt gcgcgcgttg ttccgtgttc
     2101 tggaacgcga ggatcacgcg gcccgaaccg gtatcgatca acccaacccg cgcgccgagc
     2161 cgcaccgaga tcccccatgt tcccggcccg tcgacctgcg cgatcaccag cagattgccc
     2221 cggtcatagg cggcgagatg acacgactgc tccgcacgat cggcgaaacg ctgcatgacc
     2281 ggcaaggctt ccgcgatcag gcggttcatc ggcggatgcc ggtgcgcgag cgcatacaac
     2341 ttcaggctca gcgaataacg gtcgcccgcg ggcgagcgca ccacgtactg ccgcgcgacc
     2401 agccgctcga gcatccggta catctcgctt gcgttgcgcc cgagcgattt cgtgatctcg
     2461 gcgcgcgtga gtccatcctt ttgctcggcg agcagctcga ggatatcgag acctttatcc
     2521 agcgcgggcg ctcggtagcg gtcggcgtcg gtgggatcgt ctgcctgcat gatggccttc
     2581 agttaagtcg cttaaaaaca agatgctaag ggaaaacacg gaccgcccag cggcgcagtt
     2641 agcttgactt cgacttgtcc gcatatgaat aatacgttca ctgataaatg attgtactga
     2701 tgcaaacccg cggcattacc catatgaccg ctgaatgcca tccgttccca aggacgtttc
     2761 tgtgctgcaa actcctcaca aaccaaccga cgcccggctc attcttcaaa gcccgcagga
     2821 caattgcctg attgccggtg cgcgcctgca agcgggggag cgtgtggaaa tcgaggggga
     2881 gttcgtcacg ctggcaaaga ccatcgacct tgggcacaaa gtcgctcgcc tcgcgttgcg
     2941 gacagacgaa aaagtgcttc gatatggcgc gatcattggc catgtgacgt cggacgttca
     3001 gcccggtgaa catctgcata cacacaatct cgagagcgac tatctcccga cctataccca
     3061 cgacgccggc catgcgttcg tggatcaccg ggaccgctaa gccgatgaca gccaccacca
     3121 ctccgcagct tcaaggattc ctgcgtgccg atgggcgcaa gggcattcgc aatgtaatcg
     3181 cggttgcgta tctcgtcgaa tgcgcgcatc acgtggcgag ggaaatcgtc acgcaatttc
     3241 gtccggcgtt cgacgccttc gacgaccccg ctgctgatcg cgaaccgccc gtgcacctga
     3301 tcggcttccc gggctgctac ccgaacggct atgccgaaaa gatgatggag cggctgacca
     3361 cgcacccgaa tgtgggcgcg gtcctgttcg tctcgctcgg ctgcgagagc atgaacaagc
     3421 actatctggt cgacgccgtg cgcgcgagcg gccgcccagc tgaggttctg acgatccagg
     3481 aaaaaggcgg gacgcgcagc acgatccaga atggcatcga ctggattcgc gacgtgcgtg
     3541 cgacgctcgc acagcaaccg aaagtgccga tggcgctcga cgaattgatc gtcggcacga
     3601 tttgcggcgg ctcggacggc accagcggca ttacggcgaa tcccgctgtg ggtcgcgcgt
     3661 tcgatgcgct gatcgacgcc ggcgccgcgt gtattttcga ggaaaccggc gaactggttg
     3721 gctgcgagtt ccatatggaa agccgggccg cgcggccgga actgggccgt gaaatcgtcg
     3781 cgtgcgtgga caaggccgcg cgctattact ccatcatggg acacggttcg ttcgcggtcg
     3841 gcaacgcgga tggtggactt accacgcagg aagaaaaatc acttggcgcg tatgcgaaaa
     3901 gcggtgcatc gcccattgtg gggatcgtca agccgggtga cattccgccc gtcggtggtt
     3961 tgtatctgct cgatgtcgtt cccgatggcg aaccgcgttt cggctttccg aacatcagcg
     4021 acaacgcgga aattggcgaa ctcatcgctt gcggagcgca cgtgatcctg ttcacgaccg
     4081 gacgcggttc ggtggtcggt tcggccattt cgcccgttat caaggtatgc gcgaatccgg
     4141 cgacctatcg gaatctttcc ggcgatatgg acgtggacgc gggccggatt ctggaaggcc
     4201 gtgccacgct ggacgaagtt ggccgcgaag tattcgatgc cactctaagc gtggcggccg
     4261 gcgctgcgtc caagtcggaa tcgctggggc atcaggagtt catcctgacc tacaagagct
     4321 ttgatccggt tggcccggct tgcctgccgg cgagcgcgac gccgcggcat gcggtaccga
     4381 taacgtcgat ttgagcctga ctttgagccc aagtttgtgc acgacaacaa gtccaacgca
     4441 atgaacctaa tgaccggaaa tcccgttgtg aaaaagcgca aagtgggcaa gacctcgctg
     4501 gaagtcacgg cgttgtcgct gggcagtgcg ccgctgggcg gcctgtatca cgatctttcc
     4561 gaggcagacg cgcaagcgac cgtggacgtg gcgtggcaaa gcggtatccg tttcttcgat
     4621 accgctccgc actacggcca cacgaaagcc gaacaccgga taggcgacgc gttgcgccga
     4681 tacccgcgcg aagactttgt gctgtcgacc aaggtgggcc ggcgctttgt cccgcgcact
     4741 acgccctacg acggcagcga aggctggtcg gacccgctgc cgttccaggc gatctacgac
     4801 tacacctacg acggcattct tcgat
//
LOCUS       DATGBK010000649         3099 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_331845, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000649 DATGBK010000000
VERSION     DATGBK010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3099
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331845"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..885)
                     /locus_tag="VKJ77_09205"
     CDS             complement(<1..885)
                     /locus_tag="VKJ77_09205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45488.1"
                     /translation="MHALRDLTQGAAQGRNNVKNTRALLCVVFRACRYLSVLAAAGFS
                     GAPLAHAGCVPDVGKPRPVISLPSASISASPNLTVGDLLGSVQVAALQDIPFVCTGGA
                     NSLEVRLTRSEAPVRDLKDVYPTSVAGVGMRVSAAGGSFAGIDDAPRSVPYKVVLTSQ
                     ARHLTGFALKIDFIKTGPVQDGVLAAGPLASVMVGGTELLEVDIPSGAVIFTSSACDA
                     VHVGGSVVAGVGTAGSFTQESIVVQTGCNPGAVAVVQFGQPYLYGGTPIVGRPVYARP
                     RAGNPDSDWLDHAWPNAMG"
     gene            complement(952..2541)
                     /gene="fliD"
                     /locus_tag="VKJ77_09210"
     CDS             complement(952..2541)
                     /gene="fliD"
                     /locus_tag="VKJ77_09210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008917881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HMC45489.1"
                     /translation="MSTISSASSASSVPTPATATSANAISTAADTTAAAASARAAAAQ
                     SVISGSTGNASLDVSSLVTSLVNAKVAGQTGSLSAQQRNDNTKLSAIGALQAGLSALQ
                     AGIAPLANGAALGQFTLTADGTGLTASGSTAAATGSYSVAVTQIASAQTLSSAAFGAT
                     TALGTGSMNVSVGDKSMSVDITSANNTVSGIASAINSSSSNPGVTATVVTGTDGAHLI
                     LRSSATGASNTINVSVGTVTDDAGLSSLGVSSTAGASPSDPSTIASVSATSPWTQTES
                     AKDAMFTIDGTAGTSSSNAVTTAIQGVTLNLTAAAIGVPAGTPQTLTVAQDTTSASAA
                     INNFVNLYNTLVTTYGQVAGFDSSKAKGSQGGPLLGNAMFNTIKSTLASIVSGGVKNG
                     SSNISLGAIGITLNKDATLTADSTKITDELTSNPQGVAALFNSTTGVAAKMTKSLNGF
                     LEEKGLIANNQDPLNADLKGISSQQDTLASYSAQLTHQYQAQFTALNTVMATMNKNSQ
                     YLTQLFGGANSDGALAKGKPG"
BASE COUNT          555 a          963 c          951 g          630 t
ORIGIN      
        1 gcccatcgcg ttcggccacg cgtggtccag ccagtcacta tcgggattcc cggctctcgg
       61 gcgtgcgtag accggacgac caacaatcgg cgtgccaccg tacaagtacg gctgtccaaa
      121 ttgcacaacc gctaccgcgc ctggattgca tcccgtctgc acgacgatgc tctcttgcgt
      181 gaacgaaccc gccgtaccca ctccggcaac aacgctgccg cccacgtgta cagcgtcgca
      241 cgccgatgac gtaaatatca cggcgcctga ggggatatcg acttcaagaa gttccgtgcc
      301 acccaccatc acgctcgcga gcgggcccgc tgcgagaacg ccgtcctgta ccggacctgt
      361 cttgatgaag tcgatcttca gcgcgaagcc ggtcagatgc ctggcctggg acgtcagcac
      421 gaccttgtac ggtacggaac gaggagcgtc atcgatcccg gcaaagctac cgccagccgc
      481 gctcacgcgc atgccaacgc ccgcaacact cgtgggatac acgtctttca aatcccgcac
      541 cggcgcttcg gagcgggtca gccggacctc gaggctgtta gccccgcccg tgcagacgaa
      601 cgggatatcc tgcaacgcgg cgacctgcac cgatcccaat aaatcgccta cggtcaggtt
      661 gggcgacgcc gaaatactcg ctgaaggcag cgagatgaca ggacgtggtt tgccaacgtc
      721 cggaacgcaa ccggcgtgag cgagcggcgc gccgctgaag cccgcggccg ccagcactga
      781 caggtatcga catgctctaa aaacaacgca caaaagtgct cgcgtatttt tcacattatt
      841 acggccttgc gccgctcctt gcgtcaggtc gcgaagcgcg tgcatggtcg tcatccgcgc
      901 gctgcgcagg gcttggttcg ggtgtgtcac tgctgaatct cgacttgtca attaaccggg
      961 cttacccttc gccagcgcac cgtcactgtt agcgccaccg aacagttggg tcaggtactg
     1021 cgaattctta ttcatcgtcg ccatgaccgt gttgagcgcc gtgaactgcg cctggtattg
     1081 gtgagtgagc tgggccgagt agctcgccag ggtgtcttgc tgcgagctga tgcccttgag
     1141 gtccgcgttg agcgggtcct ggttattcgc aatcaggccc ttctcttcca ggaatccgtt
     1201 caggctcttt gtcatcttcg cggccacacc ggtcgtcgaa ttgaacaggg ccgccacccc
     1261 ttgcggattg ctcgtcagct cgtcggtaat cttcgtactg tcggcggtga gtgtggcgtc
     1321 cttgttcagc gtaatgccga tagcgccgag cgagatattg gaactgccgt tcttcacgcc
     1381 gccgctgaca atactcgcga gcgtgctctt gatcgtgttg aacatggcgt tgccgagcag
     1441 cgggccgcct tgcgaaccct tcgctttcga actgtcgaaa ccggcaacct ggccgtaggt
     1501 agtgaccagg gtgttataga ggttgacgaa gttgttgatg gcggccgacg ccgacgtggt
     1561 gtcctgtgcc acggtcagcg tctgcggcgt tccggcaggc acgccaatgg ccgccgcggt
     1621 caggttcagc gtgacaccct ggatcgcggt ggtcaccgcg ttgcttgaac tcgtgccggc
     1681 cgtcccgtcg atggtgaaca tggcgtcttt ggcagattcg gtctgcgtcc acgggctcgt
     1741 ggcggacacc gatgcaatgg tcgacggatc tgaagggctg gcgcccgccg ttgacgatac
     1801 gccgagactg gacaggccgg catcgtcggt caccgtgccc actgaaacat tgatcgtatt
     1861 cgatgcaccc gtggccgatg aacgcaagat caggtgcgcg ccgtccgtgc ccgtcacgac
     1921 ggttgccgtg acaccgggat tgctcgacga cgagttgatc gcgctcgcaa tgccgctcac
     1981 ggtgttgttc gccgacgtga tgtcgacgct catcgacttg tctccaaccg agacgttcat
     2041 cgagccggtg cccagtgcgg ttgttgcacc gaatgctgcc gacgaaagcg tctgtgcact
     2101 ggcaatttgc gtcaccgcga cggaatagct gcccgtcgca gcagcggtgc tgccgcttgc
     2161 tgtcagcccc gtgccgtcgg ccgtcaaggt gaactgtcca agagcggccc cgttcgcgag
     2221 cggcgcaatg cccgcctgca acgccgacaa cccggcctgc aaagcgccga ttgccgagag
     2281 cttggtgttg tcgtttctct gctgtgcgct aagcgagccg gtctggcccg ccaccttcgc
     2341 gttgacgagg ctcgtgacca gcgacgagac atccagcgac gcgttgcccg tcgacccgct
     2401 gatgaccgac tgcgctgccg ccgccctggc cgaggcggcg gcagccgtcg tgtcggctgc
     2461 ggtcgagatg gcgttggccg aggtcgcggt ggccggtgtg ggaacgcttg aagcgctgga
     2521 cgcgctggaa atcgtcgaca ttaaaatgct ccgtacttca gttttgctcg ttgagcctgg
     2581 atgaaaatca gccccctgaa ggcaagcctc aggggagcct caggggatcg ataagcgaga
     2641 cgacgcgaca gccgcgcgtt gcccgggctg tgcatggtcg gctgtgcatc gtctattcgc
     2701 gcatgcatgg ttgcgcactt ccgccaaggg tgaagcggcg agcaacacgc gcctcccgca
     2761 ggttctttcc aaatctttaa aaagatttct acgcgtgcgt ccagccggtt cgaggtcatt
     2821 ggtgcccggc gcgacatgcg ggccgcagcg gcgaatggcc ctatctatcg gtgatgtgaa
     2881 cgagccctgc agaaatgttc cgtaaggctc cgacaaggct cttcttctct cgcatcccgc
     2941 cggcattttt tgatttttat ttcaatattt ttcgcggatg cttgagcgct aggcacgacc
     3001 gcgtacaagc caggcgggac cagatcaatg aaacatcgtg tagaggcgct gacgggacca
     3061 cgttcgaagc cgcgctcgtt ggtatcgtga ttgtcggcc
//
LOCUS       DATGBK010000650         3191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_54442, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000650 DATGBK010000000
VERSION     DATGBK010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54442"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..1175)
                     /gene="yjfF"
                     /locus_tag="VKJ77_09215"
     CDS             complement(81..1175)
                     /gene="yjfF"
                     /locus_tag="VKJ77_09215"
                     /EC_number="7.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0103116 - ABC-type D-galactofuranose
                     transporter [Evidence IEA];
                     GO_process: GO:0042875 - D-galactonate transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactofuranose ABC transporter, permease
                     protein YjfF"
                     /protein_id="HMC45490.1"
                     /translation="MRNLLDRLVDPRTLPIVVTIVLFVVLFGFGSVMYTGFFSLQVLL
                     GLLVDNAFLLIVAIGMTFVIVSGGIDLSVGSVVALTTILCAVFAEHLHWPIWVIVPLV
                     LVLGALYGAAMGALIHFFKLQPFIVTLAGMFLARGACFLITTQSITINDPSFHALSGF
                     HIDIHGASVTAGGLIAIATLLLAIFVAHFTRFGRNVYAVGGNERSALLMGLPVARTKV
                     GVYALSGFCSALGGVVFTLYVLSGYGLQGQGMELDAIAATVIGGTLLTGGVGYVIGSV
                     FGVGILGTIQTLITFDGTLSSWWTRIVIGALLCAFCLLQRVIERHAARRKSDGTASGE
                     RARSKLKRREAARQHDAANKADPVALGSRS"
     gene            complement(1172..2209)
                     /locus_tag="VKJ77_09220"
     CDS             complement(1172..2209)
                     /locus_tag="VKJ77_09220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45491.1"
                     /translation="MNRIKAALQHPLVWPVLTLVLLIMLDLSQNAHFLSITVLDGHWF
                     GAPIDILNRAAPLVLVSLGMTLVIATRGIDISVGAVVAIAGAAAASILADDPSRVVEA
                     LAAALAVGVLAGMWNGVLVAFVGMQPIIATLILMVAGRGVAQLLTGGQIIPIGAPGYL
                     LVGGGYLARIPCSVWVAVGAIAATALLMNRTALGMFIRAIGINPVATKLVGLRSSAIV
                     FGVYTFSGLTAAIAGILISSNVRSADGNNAGLLLELDAILAVTLGGTSLLGGRFSLAG
                     TVLGALIIQTLTYTTYSIGVPPEATLVVKAAVVLVVSVIQSATARTVIMRQLKRALPY
                     ALKKPLAEATK"
     gene            complement(2206..>3191)
                     /locus_tag="VKJ77_09225"
     CDS             complement(2206..>3191)
                     /locus_tag="VKJ77_09225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45492.1"
                     /translation="VARLFDVLRTLKQSGMAILFVTHFLEQTYAISDRITVMRNGERE
                     GEYLARDLPVELLVSKMVGHERMTERLKRAADEPPAHKAAVPPFFEMRGIGRRGVMNP
                     VDIDVQPGQILGLAGLLGSGRTETARLLFGAERADAGAMSIDGKPVKLRSPRDAVRRG
                     IGYCPEDRKKEGIVADLSIRENIILALQVQRGWWRVIRKAKQRQIADDYIKRLDIKAP
                     DAEQPIGLLSGGNQQKVLLARWLATEPKMLILDEPTRGIDVAAKFEIMDRVLALCAKG
                     LAIVFISSEVSEVVRVSHRIAVLRDRRKVAEVEGHAASEDQVYRLIAGGSR"
BASE COUNT          667 a          994 c          975 g          555 t
ORIGIN      
        1 gtttgctatt tcaagacttc atttgcacga acgcgccgtg cgttcgagac ctgttcaggc
       61 gcgtgttctt ggggatcacg tcaactccgc gatcccagcg caacgggatc ggctttgttc
      121 gcggcatcat gttgccgtgc cgcctctcgg cgctttagct tcgaccgtgc tcgttcaccc
      181 gatgccgttc catccgattt gcgacgcgcc gcatgccgtt cgatcacgcg ctgcaacagg
      241 cagaacgcgc acagaagggc gcctatgacg atgcgggtcc accacgaact cagcgtgccg
      301 tcgaacgtga tgagcgtctg gatggtgccg agaatgccga cgccgaagac cgacccgatc
      361 acgtaaccaa cgccgcccgt gagcaaggtt ccaccgatga ccgtggcggc gatcgcatcg
      421 agttccatgc cctggccctg taagccatag cccgagagca catacagcgt gaacaccacg
      481 ccgcccagcg ccgagcagaa gccgctcaac gcatagacgc cgaccttcgt gcgtgccact
      541 ggcagcccca tcagcaacgc ggaacgttcg ttgccgccga ccgcatagac gttgcgcccg
      601 aagcgcgtga agtgcgcgac gaaaatggcg agcagaagtg ttgcgatggc gatcaggccg
      661 ccggccgtca ccgaagcgcc gtgaatatcg atgtgaaagc ctgacagcgc atgaaagctc
      721 gggtcgttga tcgtgatcga ctgcgttgtg atcaggaaac acgcgccgcg cgcgaggaac
      781 atgcccgcca gcgtgacaat gaacggctgc agtttgaaga agtggatcaa cgcgcccatc
      841 gctgcgccgt acaacgcgcc caagacgagc acgagcggca cgatcaccca tatcggccaa
      901 tgcaggtgtt cagcgaacac ggcgcagaga atggtcgtca gcgcgacgac cgatcccacc
      961 gacaagtcga tgccgcccga tacgatcaca aacgtcatgc cgatcgcgac gatcagcagg
     1021 aaggcgttgt cgacgagcaa gccgagcagc acctgcagcg aaaaaaatcc ggtgtacatc
     1081 acggagccga agccgaacag cacgacgaat aaaacgatgg tgacgacgat cggcagggtg
     1141 cgcggatcga ccaggcggtc gagaaggttc ctcattttgt tgcctcggca agcggctttt
     1201 tcagggcgta gggaagggcg cgtttcagtt gccgcatgat gaccgtgcgg gccgtggccg
     1261 actggatcac gctcactacg agcacgaccg ctgccttcac gacgagcgtg gcttcaggcg
     1321 gtacgccgat ggagtaagtg gtataggtca acgtctggat gatcaacgcg ccgagcacgg
     1381 tgcccgcgag gctgaacctt ccgccgagca gggacgtacc gccgagcgtg acggcaagga
     1441 tcgcatcgag ttcgagcaac agtccggcgt tgttgccatc ggcactgcgc acgttggagc
     1501 tgatcagaat gcctgctatg gccgccgtca gcccggagaa ggtatagacc ccaaacacga
     1561 ttgcgctcga acgcaagccc accaatttag tagctaccgg attgataccg atcgcgcgga
     1621 tgaacatacc aagcgcggtc cgattcatga gcagcgcagt ggccgcgatt gccccgaccg
     1681 cgacccagac cgagcacgga atgcgggcga gataaccgcc gccaaccaag agataacccg
     1741 gtgcgccgat ggggatgatc tggccgcccg tgagcagttg cgcgacgccg cggccggcca
     1801 ccatcaggat cagcgtggcg atgatcggct gcatgccgac gaacgccacc agcacgccat
     1861 tccacatgcc ggcgagcaca cctactgcga gtgccgcggc aagtgcttca actacccgcg
     1921 aaggatcgtc ggcgaggatg ctggcggctg ctgcgcccgc gatcgcaacg accgcgccga
     1981 cagaaatatc aatgccgcgt gtcgcgatca cgagcgtcat gccgagcgag acgagcacga
     2041 gcggtgcggc gcggttgagg atatcgatag gtgcgccgaa ccagtggccg tcgagtaccg
     2101 tgattgagag gaagtgcgcg ttctggctca ggtcgagcat gatcagcaag acaagcgtga
     2161 gcaccggcca tacgagcgga tgttgcaatg cggctttgat ccggttcatc ggctgcctcc
     2221 tgcaatgagt cgatacacct gatcttctga cgccgcgtgt ccctcgacct ccgccacctt
     2281 gcgccggtcg cgcagcaccg cgatccgatg acttactcgc acgacctcgc tcacttccga
     2341 cgagatgaag acgatggcaa gcccttttgc acagagtgcc agcacgcgat ccatgatttc
     2401 gaatttggcc gcgacgtcaa taccgcgcgt gggttcgtcg aggatcagca tcttgggttc
     2461 agtcgcaagc cagcgcgcca gcaggacttt ctgctggttc ccgcccgaca gaagtccgat
     2521 gggctgttcg gcatcgggcg ccttgatgtc cagccgcttg atatagtcgt ccgctatctg
     2581 gcgctgtttc gccttgcgta tcacgcgcca ccaaccgcgt tgcacctgca gcgcgagaat
     2641 gatgttttct cgtatggaaa gatccgcaac gatgccttcc ttcttccggt cctccgggca
     2701 ataccctatg ccgcgacgca ccgcatcgcg aggagaacga agctttaccg gcttgccgtc
     2761 gatagacatg gcgcccgcgt ccgcgcgctc cgcgccgaac aggagccggg cagtttcagt
     2821 gcggccggaa cccagcaggc cagccagccc aaggatctgt ccgggctgta catcgatatc
     2881 aacgggattc atcacgccgc gtctgcctat accgcgcatt tcgaagaacg gcggcacggc
     2941 agctttatgc gcgggtggct cgtcggcggc gcgcttcagg cgctcggtca tgcgttcatg
     3001 acctaccatc tttgaaacga gcagttcgac cggtaagtcg cgggcgagat attcgccttc
     3061 acgttcacca ttgcgcatga ccgtgatgcg gtccgagatc gcgtaggtct gctcgagaaa
     3121 gtgggtgacg aacaggatcg ccatgcccga ttgcttgagc gtgcgcagca cgtcgaagag
     3181 ccgcgcgact t
//
LOCUS       DATGBK010000651         1761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_77316, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000651 DATGBK010000000
VERSION     DATGBK010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77316"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VKJ77_09230"
     CDS             <1..226
                     /locus_tag="VKJ77_09230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="ISKra4 family transposase"
                     /protein_id="HMC45493.1"
                     /translation="WLVWHGKSRRSASRIKALDATLLAKEGYEHSTLFWNLRRLYFYI
                     ENNAGTLVSYGMRFHKGLPISSSIAESAVN"
     gene            428..1150
                     /locus_tag="VKJ77_09235"
                     /pseudo
     CDS             428..1150
                     /locus_tag="VKJ77_09235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008646544.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            1307..>1761
                     /locus_tag="VKJ77_09240"
     CDS             1307..>1761
                     /locus_tag="VKJ77_09240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007183001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HMC45494.1"
                     /translation="MSSVFYERAQITNWLGSHTVAKGREYVRAVSGLRWRDHRLSGKV
                     KGSAWHPYETEVHFYESEEGLWIESECTCPVGFECKHAAALLLAGLENMPGPTPDATG
                     VATPSVRPELVSWLETFRAQRAAAVPGAKKAAARPTHALAYVLVWVDYR"
BASE COUNT          360 a          555 c          540 g          306 t
ORIGIN      
        1 gtggctggtt tggcatggaa agagccggcg atcggcgtcc cgcatcaagg cgctggatgc
       61 gacgctgttg gcgaaggaag gctatgagca ctcgacgttg ttctggaacc tgcgtcgcct
      121 gtacttctac atcgagaaca acgccggtac gctcgtgagc tatggcatgc gctttcacaa
      181 ggggctaccg atcagcagca gcattgccga gtccgcagtg aactaatggt cagccatcgc
      241 atggcgaaga aacaacaaat gcgatggacg gaaggagcgc actgcctggt acaggtcaga
      301 gttgctgttc tcaacgaaga attttcggtt aagaaacttg ccgtgttgac caagacttct
      361 gcactgcaaa ctcgccgaat gcatgccgag cggcatgaat tgacctccca cggtttggtt
      421 cactctcgtt tgcggcaatc cgctcgcgtt gcgacgcgga cgcaacacgt cgacaaaacg
      481 gtctcgccgc gtcgagcgct accttgatca cgcgctgtgg gatcacgtgc tcgcgagcgt
      541 cgagctttgg ccgcgcctga gcgaacgcga cgaacagcac tacgaacgca gccgctggct
      601 aatccgtctg ctgtatcaca ccgcgctgcg tgtctccgaa gccgcgcacg cgaaggcgtc
      661 cgacttctat caacgccggg acaaatggtg gctgcacgtc atcggcaagg gcggcgccga
      721 gggcgaggtg ccggtgagcg acacgttgat ggcggacttt acgcgctatc gcgcctttca
      781 cgacctgccg cccgtgccgt gcgcgagcga gaccgggccc gccgtaatga gcatcgccgg
      841 cgacactgcg cggcacctga cacccgcggc catctacctg atcgtcagag aagtgttccg
      901 ccgcgccgct gacgcgctag acaccaccaa cccggccggc accgccacgc tacgtcgcgc
      961 atcgacccac tggcttcgcc acagcgccgc atcccatcag gccgatgccg gcacggacct
     1021 gcgcttcatc cagaaaaatc tgcggcacgc gtcgatcgag accaccggca tctatctgca
     1081 cgccgaagac gaccagcgac atacacaaac gacacgcagc agtgaacatc cagacgagcc
     1141 ctccggctag ccgaaggcgc tcgcgtaaaa tacgcatcca tcaccggcaa tggatgctgg
     1201 aggcaaacgc aggcagccca atgtcgtgag cggaacctcg acgttttctc tgcacacctg
     1261 cgttgctgtc atcaccggct tgaacacgca tggatgggtt tccttgatgt cgtcagtttt
     1321 ctatgaacgc gcgcagatta cgaactggtt aggctcccac acggtcgcca aggggcgtga
     1381 gtacgtccgc gccgtgtcgg gtttgcgctg gcgagaccac aggctcagcg gaaaggtgaa
     1441 aggctcggcc tggcacccct atgagacgga ggtgcatttc tacgagtcgg aagaaggtct
     1501 ctggatcgaa agcgaatgca cctgtcccgt gggcttcgag tgcaaacatg cggcggcgct
     1561 gctgctcgcg gggctcgaaa atatgcccgg ccccacgccc gatgcgacag gcgtggcgac
     1621 acccagcgtg cgtcccgaac tcgtgagctg gctggagacc ttccgcgcgc agcgggccgc
     1681 ggcggtgccc ggcgcgaaga aggccgcagc gagacccacg catgcgctgg cctacgtgct
     1741 ggtctgggtg gactatcgtc a
//
LOCUS       DATGBK010000652         1604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_285923, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000652 DATGBK010000000
VERSION     DATGBK010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285923"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VKJ77_09245"
     CDS             complement(<1..497)
                     /locus_tag="VKJ77_09245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HMC45495.1"
                     /translation="MASSRTSNSARKVETRGIEPVPEGECHGHPLQLFWVWFAANISI
                     LGLPLGATLVAFQHLAIWQAALVAVIGAAGSFAIVGVISIAGRRGHAPSLTLSRAIFG
                     VRGNIGPTIVSLLSRLGWETVNTTTAAYVLLSLATIVFGTPAEAKNAPVLTLVFIAVF
                     VVLTL"
     gene            complement(550..>1604)
                     /locus_tag="VKJ77_09250"
     CDS             complement(550..>1604)
                     /locus_tag="VKJ77_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HMC45496.1"
                     /translation="TPGILMSSSLLLNHTTLADRARGAFYGLALGDAFGMPTQSLSRE
                     RIVEQFGRIGKLENAFPDQPIAPGLRAGSITDDTEQAVLVAHLLADGHGKIEPMAFAH
                     ALIKWEASMKARGSLDLLGPSTKQAIERIAAGEDPLRTGRFGTTNGAAMRVTPVGIAF
                     DLRRRDVFIDAVVQSCVVTHNTTLGISSAAAVAAAVSAGLNGASLAEALEAGIAMAEA
                     AESRGFWVAGGRIAPRIRHARELMRNCAAHEVADTIYDVIGTSVASQESVVAAFALAF
                     EADTRSSTIEAALGAAASLGGDTDTIAAMLGAILGACAGYDALPTGPIETIRRVNSLD
                     LEPLVDRLLGLRAATS"
BASE COUNT          333 a          529 c          484 g          258 t
ORIGIN      
        1 atcaacgtca gcaccacgaa cacggcgatg aacacaagcg tcagcaccgg cgcgttcttg
       61 gcttccgcgg gcgtgccgaa cacgatggtt gcaagggaca gcagtacgta cgctgcggtg
      121 gtcgtgttga ccgtctccca gccgagccgc gataacagcg agacgatggt cggcccaata
      181 ttgccgcgca cgccgaagat cgcacgcgac aacgtgagac ttggcgcatg cccgcgccgc
      241 cccgcgatcg agatcacgcc gacaatggcg aacgatcccg ccgcgccgat cactgcaaca
      301 agcgccgcct gccagatcgc gagatgctgg aaagcgacca gcgtcgcgcc gagcggcagt
      361 ccgaggatgc tgatgttggc ggcgaaccag acccagaaaa gctgcagcgg atgcccatga
      421 cattcgcctt ccggtacagg ttcgatacca cgcgtctcga ctttgcgagc gctgtttgac
      481 gtgcgtgacg aagccatctg agtctgatct ccagattaaa aggatacagc ggaaggtacg
      541 taaagcgcgt caggaagtgg cggcgcgcag tccgagcaag cggtcgacca gcggctcgag
      601 atcgagcgaa ttcacgcgtc gaatggtctc gatgggacca gtcggcagcg cgtcataacc
      661 tgcgcacgcg ccaaggatcg cgccgagcat ggcggcgatc gtgtcggtgt cgcctcccag
      721 gctcgctgca gcccccaagg cggcttcgat cgtgctacta cgtgtgtctg cttcaaaggc
      781 cagcgcgaac gccgccacga ccgattcctg cgatgccacc gacgtaccga tcacgtcgta
      841 gatcgtgtcc gccacctcat gcgcggcgca gttgcgcatc agctcacgtg catgacggat
      901 acgcggcgca atacgcccgc ccgcaaccca gaacccacgg ctttcggcag cctcggccat
      961 agcaatgccg gcttcaagcg cctcagccag gctcgcgccg ttcagtccgg ccgataccgc
     1021 cgccgcgacc gccgccgcac tcgaaatgcc aagcgtggtg ttatgcgtca cgacacacga
     1081 ctgcacgacg gcatcgataa acacatcgcg gcgcctcagg tcgaacgcga tcccgaccgg
     1141 cgtcacgcgc atggccgcgc cattggtcgt accaaaacgg cccgtgcgca gcgggtcttc
     1201 accggccgca atgcgctcga tggcctgttt cgtcgatggc ccgagcaaat cgagcgaacc
     1261 acgcgccttc atcgacgctt cccatttgat caatgcatgc gcgaacgcca tcggttcgat
     1321 cttgccgtgg ccgtcggcca gcaaatgcgc aacgagaacc gcctgttccg tatcgtcggt
     1381 gatggagccg gcccgaagac ccggcgcgat cggttgatcc ggaaatgcgt tttccaactt
     1441 gccgatacgt ccgaactgct cgacgatgcg ctcccggctg agcgactggg tcggcatgcc
     1501 gaacgcatcg ccgagtgcaa gaccgtagaa ggcgccgcgt gcgcgatccg ccaacgtggt
     1561 gtgattcaaa agcaaagacg aagacatcag aattccaggt gtag
//
LOCUS       DATGBK010000653         1555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_216369, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000653 DATGBK010000000
VERSION     DATGBK010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216369"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VKJ77_09255"
     CDS             <1..250
                     /locus_tag="VKJ77_09255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010459028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HMC45497.1"
                     /translation="PEKKVKAMLVYPMSAGRNFDEVLRLLDALQLNAKHAVATPVNWK
                     PGEDVIIPTSVSNDAAMQKYPQGFKTVKPYLQYVAQPK"
     gene            443..1513
                     /locus_tag="VKJ77_09260"
     CDS             443..1513
                     /locus_tag="VKJ77_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HMC45498.1"
                     /translation="MTFRQLFDQQSSTYTYLLADSTTREGVLIDPVFEQVRRDGALIE
                     ELGLHLRYTIDTHVHADHVTGAWMLNRRNGSRIAISAASGAEGANRYLSHGDKVEFGA
                     RYLTIRATPGHTDGCITLVLDNETMAFTGDCLLIRGTGRTDFQHGDAHTLFRAVHNHI
                     FTLPAACLLYPAHDYRGLTVTSVGEERRFNPRLGGELCEDDFTGYMTNLHLPHPKQID
                     VAVPANLKCGLAASNPAQMKEPEWAPLTCSFAGIWEINAQWLEENLRAVEIVDVREPG
                     EFNGPLGRIPAATLIPLGDLAERAAELTKERPIVTVCRAGGRSAQATLMLRQAGFEQV
                     ANLAGGMLRWRAEGRVVENASM"
BASE COUNT          324 a          457 c          477 g          297 t
ORIGIN      
        1 accggagaag aaggtcaagg cgatgctcgt ctaccctatg agtgcaggcc gcaatttcga
       61 cgaagtactg cgcctgctcg atgcgctgca actcaacgcc aaacacgcgg tggcgacgcc
      121 ggtgaactgg aagccgggtg aagacgtgat cattccaacc tccgtttcca acgatgccgc
      181 gatgcaaaaa tatccgcagg gtttcaaaac cgtgaagcct tacctgcagt acgttgcgca
      241 accgaagtaa gcgctccttg atcggagcgg caagcgccag accgtgcaaa gtttggcgcc
      301 cgattcgagt ccgggtgcat tcgtgagtcc ggcactctga gcgggctgcg tccaagttcg
      361 actacccgcg ggacagcttg tcaacgctct gcgggcagtt tcctgaagcg ctcgcaaaag
      421 cgggccgcgg agcgaaatcg tgttgacctt ccgccagcta ttcgatcagc aatcgtcgac
      481 ctacacgtat cttttggcgg atagcacaac acgcgaaggt gtgctgatcg atccggtttt
      541 tgaacaggtg cgccgggacg gtgccctgat tgaagagctt ggattgcatc tgcgttacac
      601 aatcgacacc cacgtccatg ccgatcacgt gaccggcgca tggatgctga atcgccgcaa
      661 cggcagcagg attgcgatat cggctgcgag cggcgccgaa ggcgcgaacc gctatctgag
      721 tcatggcgac aaggtcgagt tcggcgcgag gtacctgacg attcgtgcga caccgggtca
      781 taccgatgga tgcatcacac ttgtgctcga caacgagacc atggcattta ccggcgattg
      841 cctgttgatc aggggcactg gccgcacgga tttccagcac ggtgacgcgc acaccttgtt
      901 tcgcgcggtc cataaccaca ttttcacgct gcccgctgcg tgcctgcttt acccggccca
      961 cgactatcgc ggtttgacgg tcaccagtgt gggcgaggag cggcgcttca atccgcgcct
     1021 tggcggtgag ttgtgtgaag acgatttcac cggatacatg acgaacctgc acctgccaca
     1081 tccgaagcag atcgacgtag cggtgcctgc gaacctgaaa tgcggcttgg cggccagcaa
     1141 tccagcgcaa atgaaggagc ccgagtgggc gccactgaca tgcagctttg cgggcatctg
     1201 ggaaatcaat gcacagtggc tggaggaaaa tctgcgtgcg gtcgagatcg tcgacgtgcg
     1261 cgaacccggc gagttcaacg ggccgctggg ccgcatcccc gcagctacgc ttattccctt
     1321 gggtgatcta gccgagcgcg ccgctgaact cacgaaggag cgcccgatcg tgactgtctg
     1381 ccgggccggc gggcggtcgg cacaagccac gctcatgctg cggcaggccg gcttcgagca
     1441 ggttgccaac cttgccggcg gtatgctccg ctggcgtgca gaaggccgag ttgtcgaaaa
     1501 cgctagcatg tagcgctcgg ccaatggatg cctgaccaaa acgtattgat cgtta
//
LOCUS       DATGBK010000654         1533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_170197, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000654 DATGBK010000000
VERSION     DATGBK010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170197"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..766
                     /locus_tag="VKJ77_09265"
     CDS             <1..766
                     /locus_tag="VKJ77_09265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HMC45499.1"
                     /translation="GGLNAREVFEQPRKGYVLFNVEPAFDTANPALALAALKQAEMVV
                     ALSAFKHGADYADVLLPIAPFTETSGTFVNAEGTAQTFNGVVRPLGETRPGWKVLRVL
                     GSILGLKGFEFETAEEVRDAALGTGDLTARLSNKTNVAIKAVAKAAAVKEGSYERLAD
                     TPIYHADALSRRAESLHLTAAARDANVVALPTSLFEKLGLKNGDAVRVAQGDLAVVLP
                     AVRDANLAESVVRVSGGTSAGAALGALFGELVVEKA"
     gene            767..>1533
                     /locus_tag="VKJ77_09270"
     CDS             767..>1533
                     /locus_tag="VKJ77_09270"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009892166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit H"
                     /protein_id="HMC45500.1"
                     /translation="MGLFDTINAGGTQILGVAWPTVWALVRILVVSVVILLCVAYLIL
                     WERKLIGWMHVRLGPNRVGPLGLLQPIADVLKLLLKEVIQPTQASRWIYLIAPIMTVV
                     PAFAVWSVIPFQAKAVLGDINAGLLYVMAISSVGVYGVILAGWASNSKYAFLGAMRAA
                     AQMVSYEISMGFALVVVLMVTGSLNMSAIVVSQEQGIFANWGINFLSWNWLPLLPMFV
                     VYFVSGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFA"
BASE COUNT          267 a          415 c          521 g          330 t
ORIGIN      
        1 aggcggactg aacgcacgtg aagtattcga gcagccgcgc aagggttacg tgctgttcaa
       61 cgtcgaaccc gcattcgata ccgccaaccc ggctcttgcg ctcgccgcat tgaagcaggc
      121 agaaatggtt gtcgcgttgt cggcattcaa gcatggcgcc gattacgccg acgtgctgct
      181 gccgatcgca ccgttcacgg aaacatcggg cacattcgtc aacgctgaag gtaccgcgca
      241 gacgttcaac ggcgtggtgc gtccgctggg cgaaacgcgt ccgggctgga aggtgttgcg
      301 cgtgctgggc agcatcctcg gcctgaaggg tttcgagttc gagaccgccg aagaagtccg
      361 cgacgccgca ttgggcacgg gcgatctgac ggcgcgtctg tcgaacaaga cgaacgtggc
      421 gatcaaggct gttgcgaaag cggctgcagt gaaggaaggc agctacgaac gtcttgccga
      481 cacgccgatt tatcacgccg acgcattgtc gcgtcgcgct gaatcgttgc atctgacggc
      541 tgctgcgcgc gacgcgaacg tagttgcgct gccgacgtcg ctgttcgaga aactcggtct
      601 gaaaaacggc gatgcagtac gtgttgccca aggtgatctt gcggtggtcc tgccggcagt
      661 tcgcgacgcg aacctggcgg aaagcgtggt gcgtgtatcg ggcggaacgt cggccggcgc
      721 agcgctcggg gctctgttcg gtgaactggt agtggagaag gcgtaaatgg gcttgttcga
      781 tacgatcaac gcaggcggga cgcagattct tggcgtcgcc tggccgacgg tgtgggcgtt
      841 agtccgcatt ctcgtggtct cggtagtgat cctgctgtgc gtggcgtacc tgattctgtg
      901 ggaacgcaag ctcatcggct ggatgcacgt gcgtctcggc ccgaatcgcg tgggtccgct
      961 cggtctgttg cagccgatcg ccgacgtgct gaagctgttg ctgaaggaag tgattcagcc
     1021 gacgcaagca agccgctgga tctacctgat cgcgccgatc atgaccgtgg tgccggcgtt
     1081 cgcggtgtgg tcggtgattc cgttccaggc gaaagcggtg ctcggcgaca tcaacgcggg
     1141 cctgctctac gtgatggcga tttcgtccgt cggcgtgtac ggcgtgatcc tcgccggttg
     1201 ggcgtcgaat tcgaagtacg cgttcctcgg tgcgatgcgc gcagcagcac aaatggtctc
     1261 gtacgaaatt tcgatgggct tcgcgctcgt cgtcgtgctg atggtgacgg gcagtctgaa
     1321 tatgtcggcc atcgtggtgt cgcaggaaca gggcatcttc gcgaattggg gtatcaactt
     1381 cctctcgtgg aactggctgc cgctgctgcc catgttcgtt gtgtatttcg tgtcgggcat
     1441 tgctgaaacg aaccgtcacc cgttcgacgt ggtggaaggc gagtcggaga ttgttgctgg
     1501 ccacatgatc gattattcgg gcatggcgtt cgc
//
LOCUS       DATGBK010000655         2226 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_216378, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000655 DATGBK010000000
VERSION     DATGBK010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216378"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1522
                     /gene="garD"
                     /locus_tag="VKJ77_09275"
     CDS             <1..1522
                     /gene="garD"
                     /locus_tag="VKJ77_09275"
                     /EC_number="4.2.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008348543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008867 - galactarate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0046392 - galactarate catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="galactarate dehydratase"
                     /protein_id="HMC45501.1"
                     /translation="GLPGGAVFPDGLVLRERVPQGHKVALSDLAEGAEVIRYNVVIGY
                     ALKALPKGSWINEHVIRMPSPPGLEGLPIATVKPPAMPPLEGFTFEGYRNADGSVGSR
                     NILAITTTVQCVADVVEHAVVRIKAELLPRYPNVDDVVGLGHTYGCGVAIDAPDAMVP
                     IRTVRNISLNPNFGGEVMMVSLGCEKLQPERLMPPGTIPIATVDNVDDVADIGDLAHD
                     LNGDVVVLQDDAHVGFQSMIDSIMRMAEGHLQRLNNRRRETCPASDLVVGVQCGGSDA
                     FSGLTANPAVGFATDLLVRAGATVMFSEVTEVRDGVDQLTSRAATPEVAEAIIREMRW
                     YDDYLQRGSADRSANTTPGNKKGGLSNIVEKAMGSIIKSGNAAISGVLSPGEKVKQKG
                     LIYAATPASDFICGTLQLAAGINLHVFTTGRGTPYSLAEVPVIKVATRSDLARRWHDL
                     MDVNAGTIATGDATIEDVGWELFRLMLEVASGRKQTCAEKLKLHNALVLFNPAPVT"
     gene            1603..>2226
                     /locus_tag="VKJ77_09280"
     CDS             1603..>2226
                     /locus_tag="VKJ77_09280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006410639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45502.1"
                     /translation="MKSRYRWVVAVLLFFAGMLNYLDRAALSVVAPIIKRELHINDAQ
                     MGLLFSSFFIGYCVFCFVGGWAADKYGPRKVFMLAAGFWSVFCGATAFAGSFATLMVA
                     RVAFGVAEGPMGTTTNKSISNWFPRREAGRAVGLTNAGQPLGAAIAAPIVGLVALQFG
                     WRISFIVIALLGFAWMVFWWRCFRDQPGDHPDVSREEAELIASDRHPT"
BASE COUNT          414 a          631 c          724 g          457 t
ORIGIN      
        1 cggtctcccg gggggggcgg tctttccaga cggtcttgtg ttgcgtgagc gcgtgccgca
       61 gggtcataag gtcgcgctct cggatctcgc cgaaggcgcc gaggtcatcc ggtacaacgt
      121 ggtgatcggg tacgcgctca aggcgctgcc aaagggcagc tggatcaatg agcacgtgat
      181 tcgtatgccc agtccgcctg gccttgaggg cttgccgatc gccacggtta aaccaccggc
      241 gatgccgccg ctcgagggct tcactttcga ggggtatcga aatgcggacg gttcagtcgg
      301 gtcacgcaat atccttgcga ttacaacgac cgtccaatgc gtggccgatg tagtcgagca
      361 cgcggtcgtg cggatcaagg ccgaactgct gccgcgttac cccaacgtcg acgatgtcgt
      421 tggcctcggg cacacctatg gctgcggcgt tgctatcgac gcgccggatg cgatggtgcc
      481 catccgcacg gttcgcaaca tcagcctgaa tccgaacttc ggcggagaag tgatgatggt
      541 gagcctcggt tgcgaaaagc tgcagccgga gcggctgatg ccgccgggga ccattccgat
      601 cgcgactgta gacaacgtgg acgacgtggc cgatatcggc gacctcgcgc atgacctgaa
      661 cggcgatgtc gtggtcctgc aggacgacgc ccatgtcggc ttccagtcga tgatcgactc
      721 gatcatgagg atggctgaag gtcacctcca aaggcttaat aaccggcgcc gcgaaacctg
      781 tccggcgtcc gatctcgtgg tcggcgtgca gtgcggcggc agcgacgcat tctcaggact
      841 cacggccaac cccgcggtcg gattcgccac ggaccttctg gttcgcgccg gcgccaccgt
      901 catgttctcc gaggtcaccg aggttcgtga tggcgtcgac caactgacca gtcgcgctgc
      961 aacgccggag gtggcggagg cgatcatccg tgagatgcgg tggtacgacg attacctgca
     1021 gcgtggcagc gccgatcgca gtgcgaatac gacaccggga aataaaaagg gcggcttgtc
     1081 gaacatcgtc gaaaaggcga tgggctcgat tatcaaatcg ggtaacgccg ctatttcggg
     1141 ggtgctgtcg cctggcgaaa aggtgaagca gaaaggcttg atctatgcgg cgacgccggc
     1201 aagcgatttt atctgcggca cgttgcaact ggcagcaggt atcaacctgc atgtcttcac
     1261 gaccggacgc ggcacgccat acagtctggc tgaggtgccg gtcatcaagg tcgccacgcg
     1321 ctcggacctg gcgcgccgct ggcatgattt gatggacgtc aatgcaggca ccatcgcgac
     1381 cggagacgcg accatcgagg atgttggctg ggaactattc cggctgatgc ttgaggttgc
     1441 gagtggccgc aagcaaacgt gcgcggaaaa actgaagctg cataacgccc ttgttctgtt
     1501 caatccggct ccggtgacct gatgacggcc agcaagcagt aggacagact gtttgaaacg
     1561 acgtcacaga tagcgctaca cgcgcagtga catggaggag acatgaaatc ccggtatcgc
     1621 tgggtggtgg ccgtgctgtt gtttttcgcc ggcatgctca actatctcga tcgcgcggcg
     1681 ttatccgtcg tcgcgcccat catcaagcgt gaattgcata tcaacgacgc ccagatgggg
     1741 ttgctcttca gcagcttctt catcggttac tgtgtgttct gtttcgtagg cgggtgggcc
     1801 gccgacaaat atggtccacg caaggtgttc atgctggcgg ccggtttctg gtcggtgttt
     1861 tgcggggcga cagcgttcgc cggcagcttt gctaccctca tggtcgcgcg ggtggcgttc
     1921 ggtgtcgcgg aaggtcccat ggggacgacc acgaacaagt cgatttccaa ttggtttccg
     1981 cgccgggaag cggggcgagc ggttggcctg accaatgccg ggcagccgct tggcgcagcg
     2041 attgccgcgc ctattgtcgg actggtcgcg ctgcagttcg gctggcgcat ttcgttcatc
     2101 gtgatcgcct tattgggctt cgcctggatg gtgttttggt ggcgctgttt ccgcgatcaa
     2161 ccaggtgacc atcccgatgt gtcacgagaa gaagcagaac tcattgcatc cgatcgtcac
     2221 ccgacg
//
LOCUS       DATGBK010000656         3682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_216386, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000656 DATGBK010000000
VERSION     DATGBK010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216386"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(219..1070)
                     /locus_tag="VKJ77_09285"
     CDS             complement(219..1070)
                     /locus_tag="VKJ77_09285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012337408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HMC45503.1"
                     /translation="MRLEQVADLEELAELRRVGSRLLQSKAGFREGLLFDFYPEHTEF
                     DEPKLAQLHHPSMLERSIAETELRRAAHRIAVQLLGDKARFVSDSFFYKPAHADAVTP
                     WHQDEAFTDPTIEYREINLWFPLQDVSLANGCLQFIQGSHLGPVLPHQPIGGDPSTHG
                     LECIDGFDPATAVVCPLSVGGCTIHAGRTLHHAGPNLSDAPRYAYAMVFGLPRRAATT
                     VRSFPWHSNRELSRGKRVNESRSRGGFLPYLYRKMREFDPTSAYEWRLAARRFAKLVA
                     RRQHRVD"
     gene            1601..2683
                     /locus_tag="VKJ77_09290"
     CDS             1601..2683
                     /locus_tag="VKJ77_09290"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HMC45504.1"
                     /translation="MQKALLSIVIPAYNVEHFIVASLTSALQQSRAGEIELIVVDDGS
                     TDRTLERIRAVQETEAGRHIKVIHQENRGVSAARNAGIARATCPYIGFLDADDVWDVR
                     FSETILPLLSADSADIIEFNLGIVNTDGMQIDRMQLVDPATLGKRACDLSALMEFAKV
                     CQAFPVVRVYRRELWDGIDFPVGRVYEDFATIPFIYTRARTLYRLADELYYYRRRAGS
                     ITQSASLHSAEGIALCAKEALERCEGGAIGPLDAYWLAIFHKAFRYACVEASRVPMSA
                     FRESMKMIDDIAARYHRLAGARAAGTLPALHYRSRIFIDRRIFHAKQLVKHTFGLHLR
                     PSRQAPRIIQPEPQAGLPTRATVSGR"
     gene            2710..>3682
                     /locus_tag="VKJ77_09295"
     CDS             2710..>3682
                     /locus_tag="VKJ77_09295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N-dimethylformamidase beta subunit family
                     domain-containing protein"
                     /protein_id="HMC45505.1"
                     /translation="MQIYPIHTSFTAGESFELAVQPKRRFGVAIYQQGGDELLLFCSG
                     VVVEGQNNVKASLVDGHTIFESAGSNDAVPFDHDWNWPTIRIRPDLPAHEALSSGAYV
                     AVAYEVTAAGKPRDETGRRCLGRKPVSGAPPASDSMALVVARPRIPTAPVAYIVPVAT
                     YHAYNSIGGGCYYNDPIHRRPAAMQVSLRRPGGGLGAQLGEPVDPYDSASPRQQFSHW
                     DAKFIRWLRAEGIACDFYTDLDLHEGSALDLTNYRCMLSVGHHEYWSHEMREHVARFV
                     EQGGNLAVFSGNTCYRPVKFTCDAAGNPIGMRKLAGDWDLLTEKPNND"
BASE COUNT          749 a         1117 c         1088 g          728 t
ORIGIN      
        1 gtccacatta caaataggac ggccacggcg cggattgcat cgatatgaga cattcgatgc
       61 ggcatgactc cggctgtcgt cttcaacgaa gtttccccta gaataaaaga acgttcctcc
      121 agatcggtct attcactgct cagcaacagc cgccgtcatt cgaaagctac cggtagagcg
      181 agcccacgct tacgcccgca gtcactcagc ggagtcgttt agtcaacccg atgctggcgc
      241 cgcgctacga gcttggcaaa ccggcgcgca gcgagacgcc actcgtacgc actcgtgggg
      301 tcgaactcac gcattttccg atacaggtag ggcaggaagc cgccgcggga gcgagactca
      361 ttcacgcgct tgccgcgcga cagctcgcgg ttgctgtgcc acgggaacga ccgcacggtg
      421 gtcgccgcgc gtcgcggcag gccgaatacc attgcgtacg cgtaacgtgg cgcgtccgat
      481 aggttagggc ccgcgtgatg caaggtgcgc cccgcgtgaa tcgtgcagcc gccgaccgag
      541 agcggacaga cgaccgcagt ggcgggatcg aagccgtcaa tacattcaag gccgtgagta
      601 ctcgggtcgc ccccaatcgg ctggtgtggt agcacgggtc cgagatgcga gccttgaata
      661 aactgaaggc agccgttcgc aagcgagaca tcctgcaacg gaaaccaaag gttgatctcg
      721 cggtattcaa tggtcggatc ggtgaacgct tcgtcttgat gccacggcgt caccgcgtcg
      781 gcatgagccg gcttgtagaa gaagctgtcg ctgacgaagc gcgccttgtc gccgagcaat
      841 tgcaccgcga ttcggtgcgc ggcacggcgc agttccgtct cagcgatgct gcgttccaac
      901 attgatggat ggtgaagctg ggcgagctta ggctcgtcga actcggtatg ctccggatag
      961 aagtcgaaaa gcagcccttc ccgaaagcct gctttgctct gcagcaagcg actgcccacc
     1021 cgccggagct cggcaagctc ttcgaggtcc gctacttgct ctagccgcat aaacccgtct
     1081 aaccaaaagc gctctttttg gctctgtgac aagggagcgg cggcgattgt gtcgtgcttc
     1141 aaaataggcc tctggctcta gttggatttg ccctcactag accatgttac aaatcagcac
     1201 tccgtgcgat tcagcgcata aaacggtatt ttcgatgtgc aacgtgcttg gtcgagcccg
     1261 agccggaaat aacaccctgg cggcggtccc tgccgcagcc gtgtctatgt gtccgagaaa
     1321 cgccaaaggc ttcgagcttc tattcagctc atctatagac agcgcatgaa attttgctcg
     1381 agttggtttg acgttaagcg ccgcacatcg cgatttaacg ttgggcgccg cacatcttcg
     1441 accacaagga ctggatactc ttcttactgc gtgtaagaat ttgtgtaaga atctgagcga
     1501 ttgccatagc acgcatttct gccagggtca tcggaagtat tctgaacgtc gcgccaaacc
     1561 gaacaagggc tgttagacag actgcggcca aggagacacc atgcaaaaag cgttgctgtc
     1621 gattgtaatt cccgcataca acgtcgagca tttcatcgtc gcatcgctaa catcggcatt
     1681 gcaacaatcg cgagcagggg agattgagct cattgttgtg gacgacggct caaccgatcg
     1741 cacgctcgaa cgaatccggg cagtgcaaga gaccgaggcc ggccgtcata tcaaggtgat
     1801 ccatcaggaa aaccgcggcg tgagcgcggc gcgcaatgca ggcatcgcgc gcgcaacatg
     1861 tccgtatatc ggctttctcg atgcggacga tgtttgggac gtgcgtttct ctgaaacaat
     1921 cctgccgctg cttagtgccg actccgccga tatcatcgaa ttcaatctcg ggatcgttaa
     1981 tacggacggc atgcagatcg accgcatgca gcttgtcgac cctgcaacgc tcggcaagcg
     2041 cgcgtgcgat ctttccgcac ttatggagtt tgcgaaggtc tgccaagcat ttccggtcgt
     2101 gcgcgtttac cggcgcgaac tatgggacgg tatcgacttt ccggtgggcc gggtatacga
     2161 ggacttcgca actattccgt tcatctatac gcgcgcccgc acgctgtatc gcctcgccga
     2221 cgagctctat tattaccggc gccgcgccgg cagcatcacg cagagcgcct cgctgcattc
     2281 ggcggagggc attgcgctct gtgccaaaga agcgcttgaa cgttgcgaag gcggtgccat
     2341 aggacccctt gacgcctact ggctggcgat attccacaag gcgtttcgct atgcgtgcgt
     2401 agaggcgtca cgcgtgccaa tgagcgcgtt tcgtgaatcg atgaagatga tcgacgacat
     2461 agccgcgcgc taccaccgcc tggcgggagc gcgggctgcc gggacgctgc cggcgctgca
     2521 ttatcggtcc cggatcttta tcgatcggcg gatctttcac gccaagcaac tcgtcaagca
     2581 cacgtttggc cttcacctca ggccgtcccg ccaagcgccg cggataatcc agcccgagcc
     2641 gcaggctggt cttccgacgc gtgcgaccgt cagcggccgt tgagcgagtt tgtcttttgg
     2701 aaaccgatca tgcagatcta cccgatccac acgagtttca ctgccggtga atcctttgaa
     2761 cttgcagtgc aaccgaagcg ccgcttcggg gtcgcgattt atcagcaggg cggcgacgaa
     2821 ctgctgctgt tctgcagcgg cgtggtggtt gagggacaga acaatgtgaa agcgtcgctg
     2881 gtggacgggc acaccatttt cgaatcggct ggcagcaacg acgctgtgcc gttcgaccat
     2941 gactggaact ggccgaccat ccgcatccgg cccgatctgc ccgctcacga ggcgctttca
     3001 agcggcgcct acgtggccgt cgcctatgaa gtcacggcgg cgggaaaacc gcgtgacgaa
     3061 accgggcgcc gctgcctcgg ccgcaagccg gtgtccggcg cgcctcccgc aagcgacagc
     3121 atggcgcttg tcgttgcgcg tccgcgaatt ccaaccgcgc ctgtcgccta catcgtgccg
     3181 gtcgcaacct accacgcgta caactccatt ggcggcggct gctactacaa cgacccgatc
     3241 catcgccgtc cggccgccat gcaagtgagc ttgcgccgtc cgggaggtgg cctcggcgcg
     3301 cagctcggcg agcccgtcga tccgtacgat tccgcctcgc cacgccagca gttctcgcat
     3361 tgggacgcca agttcattcg ctggctgcgg gcggaaggca tcgcgtgcga tttctacacc
     3421 gacctcgatc ttcatgaggg aagcgcgctc gatctcacga attaccgctg catgctgagc
     3481 gtcggccacc acgagtactg gagccacgaa atgcgcgagc acgtggcgcg cttcgtcgaa
     3541 caaggcggca atctcgcggt gttcagcggc aacacttgct accggcccgt gaagttcacc
     3601 tgtgacgccg caggcaaccc tatcggcatg cgcaagctgg caggcgactg ggacttgctg
     3661 acggaaaagc cgaacaacga tc
//
LOCUS       DATGBK010000657         2315 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_100574, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000657 DATGBK010000000
VERSION     DATGBK010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100574"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..481
                     /locus_tag="VKJ77_09300"
     CDS             134..481
                     /locus_tag="VKJ77_09300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HMC45506.1"
                     /translation="MSYMLLIAEPVGQRDERSQAEGKLLYESMVEFGAGLKERGLLIA
                     SESLATGGVRVKKRDGHASLIDGPFAEAKEMIGGFYLLDCATKEEAIEIASACPAAEW
                     CEVEVRKIGPCWE"
     gene            638..1054
                     /locus_tag="VKJ77_09305"
     CDS             638..1054
                     /locus_tag="VKJ77_09305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HMC45507.1"
                     /translation="MRFIILVKATEKSEAGVFPEDALIGAMATYHEELAKAGVLLDAN
                     GLQPSAKGWRVRYEGGRRSVVDGPFAETGELVAGYTLIQVRSREEAIEWARRFPAPMG
                     EHESGEIEVRQLFELDDFGSRESIGRFRELQAARRI"
     gene            1135..1554
                     /locus_tag="VKJ77_09310"
     CDS             1135..1554
                     /locus_tag="VKJ77_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC45508.1"
                     /translation="MHKQIYVNLAVADLPKARAFFSELGFSFNPTFSNDQGACLIIGE
                     NIFVMLLVKPFFQTFTSKTIIDPKQQVEALTCLSCESRAEVDEIVAKAVRAGGTTPRP
                     VQDLGFMYGHGFDDLDGHAWEFVYMDPNADPHAASAA"
     gene            1551..>2315
                     /locus_tag="VKJ77_09315"
     CDS             1551..>2315
                     /locus_tag="VKJ77_09315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HMC45509.1"
                     /translation="MSGASGESGSQESATHRAIEAVWRMESAKVIAVVARLVRDVSLA
                     EEFAQDALIAALEHWRVDGVPDNPGAWLMTTAKHRALDRLRQDALHARKHEELGLDMD
                     AREEHVTPDFVDALDAAREDDIGDDLLRLVFTACHPVLSVDARVALTLRLLGGLTTDE
                     IARAFLQPEPTIAQRIVRAKRTLSAARVPFEVPKADARAARLASVLEVIYLIFNEGYS
                     ATAGDDWMRPSLCDDALRLGRILAGLTPDESEVFGLV"
BASE COUNT          440 a          618 c          801 g          456 t
ORIGIN      
        1 aaccgtgaaa gagggcgaca gcttagctgt ttttcggcga tgctccgctt agggccggtg
       61 catcggggga ttgaaagctt tctccacagt tgataccttg taggccggtt gaaacctcaa
      121 tccaggagat gtcatgtctt atatgttgct catcgccgaa cctgttggac agcgggacga
      181 gcgctcgcaa gccgaaggca agctgctcta cgagagcatg gtcgagttcg gtgcgggact
      241 aaaagaacgc ggtttgctga tcgcgagtga atcgctggca acgggcggtg tgcgtgtcaa
      301 gaagcgcgac ggccacgcta gcctgatcga cggcccgttc gcggaggcga aggagatgat
      361 cggcgggttc tacctgctcg attgtgcgac gaaggaagag gccatcgaga ttgcatcggc
      421 gtgtccggcc gccgaatggt gcgaggtcga ggtgcgcaag atcggcccct gctgggagtg
      481 atctttttac gccgtcttcg tacgcgtcat tctcgtacgc gttaaccctt ggcagattaa
      541 aaattgtcga tttctccggg cgtggttcgt cgtgggaacg agagcgcgat caccgttctc
      601 gttatgacac cacggtcaca ccacgaggag aacaacaatg cgattcatca tcctggtcaa
      661 ggcgaccgaa aaaagcgaag cgggtgtatt ccccgaggac gcgttgatcg gcgcgatggc
      721 gacctaccac gaagaactgg cgaaagcggg cgtgctgctc gatgcgaacg gtctccagcc
      781 gagcgccaaa ggttggcgcg tgcgttatga gggtggccgg cgcagcgtgg tcgacgggcc
      841 gttcgcggag actggcgaac tggttgcggg ttacacgctg atccaggtgc gctcacgcga
      901 agaagcgatc gaatgggcgc gccgtttccc tgcgccgatg ggcgagcacg aaagtggcga
      961 gatcgaggtg cggcagttgt ttgaactgga cgacttcggc tcgcgggaat cgatcgggcg
     1021 tttccgcgaa ctgcaagcgg cgcggcgcat ttgaaagcgg cttggaattt cctgaataca
     1081 catttgcgaa agccggctga tgtcggcacc tcccatcctt gaagggcaac aaaaatgcat
     1141 aagcaaatct acgtgaacct ggcggtggcg gacctgccga aagcgcgcgc gtttttcagc
     1201 gaactcggct tcagcttcaa tccaacgttc agtaacgatc agggcgcgtg cctgatcatc
     1261 ggcgagaaca tcttcgtgat gctgctggtc aagccgttct tccagacctt cacctcgaag
     1321 acgatcatcg acccgaaaca gcaggtcgaa gcgctcacgt gcctgtcttg cgagagccgc
     1381 gccgaggtcg atgaaatcgt ggccaaggcc gtgcgtgcag gcggtacgac gccacggccg
     1441 gtgcaggatc ttggcttcat gtatggccac ggtttcgacg atctcgacgg ccacgcatgg
     1501 gagttcgtgt acatggaccc gaacgcggac ccgcacgcgg cgagcgcagc gtgagtggag
     1561 cttccggcga gtccggcagc caggagtcgg ccactcatcg cgcgatagag gcggtgtggc
     1621 ggatggaatc ggcgaaggtg atcgcggttg tggcgcgttt ggttcgcgac gtgtcgctcg
     1681 ccgaggagtt tgcgcaggac gcgctgattg cggcattgga gcattggcgt gtggatggcg
     1741 tgccggacaa cccgggcgcg tggttgatga ccacggcgaa gcatcgtgcg ctggatcgtt
     1801 tgaggcagga tgcgttgcac gcccgcaagc acgaagagtt aggactcgac atggatgcgc
     1861 gcgaggagca cgtcacgccg gatttcgtgg atgcgctgga tgccgcgcgt gaggacgata
     1921 ttggcgacga cttgctgcgg ctcgtgttca ccgcgtgtca tccggtgctg tccgtcgatg
     1981 cccgggttgc gctgacgttg cggctgctcg gcggcctgac cacggacgag attgcgcgcg
     2041 cgttcctgca gcccgagccg accatcgcgc aacgtattgt gcgggcgaag cggactttgt
     2101 cggcggcacg ggtgccgttc gaagtgccga aggccgatgc acgggcggca cggttggcgt
     2161 cggtgctgga agtcatttac ctgatcttca acgaagggta ttcggcgacc gcgggcgacg
     2221 actggatgcg accgtcgtta tgcgacgacg cgctgcgtct cgggcggatt ttggcgggtt
     2281 tgacgccaga cgagagcgag gtgtttgggc tggtc
//
LOCUS       DATGBK010000658         3497 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_54541, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000658 DATGBK010000000
VERSION     DATGBK010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3497
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54541"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="VKJ77_09320"
     CDS             <1..246
                     /locus_tag="VKJ77_09320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid stabilization protein"
                     /protein_id="HMC45510.1"
                     /translation="RAQLTHAPQFGEQEMALLAASNHALARISRSLGPVIREGDRDGT
                     AAVAGNGRLLVELKAQIDAHLRAVSDLLRANIDRWSR"
     gene            248..1261
                     /locus_tag="VKJ77_09325"
     CDS             248..1261
                     /locus_tag="VKJ77_09325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HMC45511.1"
                     /translation="MPFPKIYIDTMLLNWGDRLFHDPLRHVGAPRLSRVQIESQAARV
                     REQLARTLKHTPEVMVKITNRAASAQGMGAVRRHLRYISRNGKVELEDQDRQTIAGVA
                     ALHDLADAWQFGGWGVPETSTRREVFNILLSMPPGTDRRAVRDAARDFAALEFGDGRD
                     YVFAAHDDEAHPHVHLCVQVRGLDGRRLNPVKRDLQRWRERFAQQLQAHGVEANATSR
                     RTRGAARRYPKQAVVHMLDRGETPRYWRALATETQRRAGWEAHYGVFAAWREMALAMA
                     ASREADDRRLAVEIVDFVRKMPVQQDGPLVAPMAPARRERSDQPLPDRGSQPNAGGPE
                     VYR"
     gene            1279..1449
                     /locus_tag="VKJ77_09330"
                     /pseudo
     CDS             1279..1449
                     /locus_tag="VKJ77_09330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006408937.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0032775 - DNA methylation on adenine
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
     gene            1731..2012
                     /locus_tag="VKJ77_09335"
     CDS             1731..2012
                     /locus_tag="VKJ77_09335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45512.1"
                     /translation="MLKSIDGGVTWSALTIPDTTRITDLLFITPAYGFALEMFGDVYD
                     TKDGGLNWAKIGMASSESGLNSFARGDSGKLLGSSALAVGGGILTMTPL"
     gene            complement(2144..2458)
                     /locus_tag="VKJ77_09340"
     CDS             complement(2144..2458)
                     /locus_tag="VKJ77_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HMC45513.1"
                     /translation="MPWFLYLIECADGSLYTGIATDVDARFAKHASGDGARYTRSRKP
                     VAVRASFELSGRAEASRAEYWVKRLPAARKWKLVRGDLKLAAVMPAMEVEADSSTHAE
                     AR"
     gene            2663..>3497
                     /locus_tag="VKJ77_09345"
     CDS             2663..>3497
                     /locus_tag="VKJ77_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidogalycan biosysnthesis protein"
                     /protein_id="HMC45514.1"
                     /translation="MNRKVEIHVVDSLDSVTPDEWNRLAGDNPFVRHEFLSALQDTGC
                     AVARTGWRPHFLLLKRDGKLTGAMPLYLKKHSRGEYVFDHAWADAFERNGLKYYPKGL
                     SAVPFSPVTGPRLIAATHEERVMLARGAIELTKQLELSSLHVLFPQEQDLEALTEAGY
                     MLREGVQFHWENAPGAPGGYDSFDAFLATMSHDKRKKVKQDRRRVVDAGVTYTWLRGA
                     EIDEAALDFFYACYENTYREHWNPPYLSREFFGQIHAAAPESILLVIAEADGQRLACA
                     LN"
BASE COUNT          659 a         1034 c         1140 g          664 t
ORIGIN      
        1 cgcgcgcagt tgacgcatgc cccccagttc ggcgagcagg agatggcact gctcgccgcc
       61 tcgaaccacg cgctcgcgag gatcagccgc tcactgggac cggtgattcg cgaaggcgac
      121 cgggatggga cggctgctgt cgcgggtaac ggtcgcctgc tcgtggagct gaaggcgcag
      181 atcgatgctc atctgcgcgc ggtgtcggat ctgcttcgcg cgaacattga tcgctggagt
      241 cgctagcatg ccttttccga agatctacat cgacacgatg ctcctgaact ggggcgaccg
      301 gctgttccac gatccgttgc ggcacgtcgg ggcgccgcgg ctctcgcgtg tccagatcga
      361 gagccaggcg gcacgtgtgc gcgagcagct ggcgcgcacg ctgaaacata cgcccgaggt
      421 gatggtgaaa atcaccaaca gggcagccag tgcgcagggc atgggtgcgg tgcgccggca
      481 tctgcgctac atctcccgca acggcaaggt cgagctcgag gaccaggacc ggcagaccat
      541 tgcgggcgtc gccgctctgc acgatctggc cgatgcgtgg cagttcggcg gctggggcgt
      601 accggagacc agcacgcgtc gcgaggtgtt caacatcctg ctgtcgatgc cgccaggtac
      661 ggaccgtcgg gcggtacgtg atgcggcgcg cgattttgcg gcgctcgaat tcggcgatgg
      721 tcgcgactac gtcttcgccg cgcatgacga cgaggcgcat ccgcatgtcc atctgtgcgt
      781 gcaggtgagg ggcctggatg ggcgacggct caatccggta aagcgcgacc tgcagcgctg
      841 gcgggagcgg tttgcgcagc agctccaggc acacggtgtc gaggcgaatg caacgtcacg
      901 gcgcacgcgc ggggcggcgc gccgttatcc gaagcaggcc gtcgtgcaca tgctggaccg
      961 cggagaaacg ccgcggtact ggcgcgcgct ggcgacggaa acgcagcggc gcgcgggctg
     1021 ggaggcacat tacggcgtgt tcgcggcgtg gcgcgagatg gcgctggcga tggccgcgtc
     1081 acgggaggcc gatgaccggc gcttggccgt ggagattgtc gacttcgtgc gcaagatgcc
     1141 ggtgcagcag gatgggccgt tggtggcgcc catggcgccg gctcgacgcg agcggtcaga
     1201 ccagcccctg ccggatcgcg gcagtcagcc aaacgcgggt ggtccggaag tgtaccgctg
     1261 atacgcgagg tgatgaccat ggcgataccg attgttccat gggttggtgg caagcgacgt
     1321 ctcgccgaca tcctgattcc gcgattttcc tgcgcacagc tgctacgttg aggtcttcgc
     1381 gggcgccacg gtgctcttct tttttggatt gttagtgccg ctgggattgt ggtgaacacg
     1441 atcgacggcg gtaaaacgtg cagtttccaa gcggatactc tgatggacgc ccgacgcatg
     1501 caatcgatgc gcaatgggtg gattttgggc accgacatcg tttcgaagat gcagattgcg
     1561 aggacgaccg acggtggaac agcgtggacg tccgctcaga ttccggatcc agagtggcat
     1621 ttgggcgcca gtccgttttt tgacgagttg cgttcggacg cagtctgttt ttcgtcgatg
     1681 ctaaaaccgg atatgcgtcg gctccgatct ggaacagaac ttccggccct gtgctgaaga
     1741 gcatcgacgg tggtgtgaca tggagcgcat tgacgattcc ggataccacg cgtatcacgg
     1801 atcttctttt catcaccccg gcgtacggat tcgcactcga gatgttcggt gacgtctacg
     1861 acacaaagga cggtggactg aactgggcaa aaattggcat ggccagttca gagtccggac
     1921 tcaactcatt tgcacgcggc gacagtggga aattactggg aagttctgct ttggcagtcg
     1981 gcggtggcat tttgacgatg actccacttt aaaagcagaa agacggttct gcgccaacgg
     2041 gtttcgatcg ttggcgcagg agctgattgt gttgatcgtg agtcggcggt ctgaatgctg
     2101 ccgcttgtta atcgcaatgt gctgagcgcc cggggtgcat cgcttatcgc gcttcggcgt
     2161 gagtgctgga gtcggcttcc acttccatgg ccggcattac tgctgccaat ttcagatctc
     2221 cccgtaccaa cttccatttc cgcgccgctg gtaatcgctt cacccagtac tcggcacgcg
     2281 aggcttctgc ccggccactc agctcaaacg aagcgcgcac ggccactggc ttgcgcgatc
     2341 gggtatatct tgcgccatcg ccgctcgcat gcttcgcgaa ccgcgcatca acatccgtag
     2401 caatcccggt atagagactg ccgtcggcgc attcgatgag gtacagaaac cagggcatgg
     2461 agaaagcttg ggaaaagggt gagatacagg gtgagataca gggtgagaaa cggatgtcgc
     2521 gcattatcca tcaagccccg gccacgaacc ccgtccgaac aaaatcctgc gacttcggcg
     2581 agaataactg ttccgcgctg caccaagcgc ccggcactca gcccgaacaa gctccaaaca
     2641 agcccgaagc gaggtaagcc tgttgaaccg caaggtcgaa atacatgtgg tcgattcgct
     2701 cgattccgtg accccggacg aatggaaccg tctcgccggc gacaacccgt tcgtccggca
     2761 cgaattcctg tcggcgttgc aggacacggg ctgcgccgtc gcccgcaccg gctggcgccc
     2821 gcatttcctg ctgctcaagc gtgacggcaa gctaactggc gccatgccgc tctacctcaa
     2881 gaagcattct cgcggcgagt acgtcttcga ccacgcctgg gcggacgcct tcgagcggaa
     2941 tggccttaag tactatccga aggggctatc ggcggtgccg ttttcgccgg tgaccgggcc
     3001 gcgcctgatc gccgccacgc acgaggagcg cgtgatgctc gcgcgcggcg cgatcgagtt
     3061 gaccaagcag ttggaactgt cttccctgca cgtactattt cctcaagagc aggatctcga
     3121 agcgctgacc gaagccggct acatgctgcg cgaaggcgtg cagtttcact gggaaaatgc
     3181 gcccggcgca cccggtggct acgacagctt cgacgcattt ctcgcgacca tgagccacga
     3241 caagcgcaag aaggtgaagc aggatcgtcg acgcgtagtc gatgccggcg tcacctacac
     3301 gtggctgcgc ggcgcggaga tagacgaggc agcgctcgat tttttctacg cctgttatga
     3361 aaatacctac cgcgagcact ggaatccgcc gtatttgtcg cgcgaattct tcggccagat
     3421 ccacgcggcc gcgcccgaga gcatcctgct cgtgatcgcc gaagcggacg gtcagcggct
     3481 cgcgtgcgcg ctgaaca
//
LOCUS       DATGBK010000659         3734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_193639, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000659 DATGBK010000000
VERSION     DATGBK010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193639"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..808
                     /locus_tag="VKJ77_09350"
     CDS             47..808
                     /locus_tag="VKJ77_09350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45515.1"
                     /translation="MSTIVEERRAEQLREASTQEPALELVGAQAWYGESHILHGVDLT
                     VHRGEVVTLLGRNGAGRTTTLRAIMGLTGRRTGSIRIGGHETVGMSTHKIAHYGVGYC
                     PEERGIFSSLSCEENLLLPPLVGPAKDAMSIDEIYSMFPNLKERRSSQGTRLSGGEQQ
                     MLAVARILRTGANLLLLDEISEGLAPVIVQTLARMIMMLKARGYTIVMVEQNFRFAAP
                     LADRFYVMEHGKIVEHFNSGELETKMPVLHELLGV"
     gene            880..2103
                     /locus_tag="VKJ77_09355"
     CDS             880..2103
                     /locus_tag="VKJ77_09355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC45516.1"
                     /translation="MKKKTLARLSGICLAVAAATASLMAGNVQAAPGDTVKIGYITDL
                     SGLYADIDGQGGLESIRMAIADFGGKVNGKPIELVYADHQNKADIAASRAREWIDRDG
                     VNVIIGGTNSATALSTNQVAAEKHIPYINIGAGADNLTNEQCSPYTVHYAYDTMALAK
                     GTGSAVTKQGGKTWFFLTADYAFGKALEKNTSDVVKANGGQVLGAVRHPLSASDFSSF
                     LLQAQSSKAQVLGLANAGGDTINSIKAAKEFGITKTMKVAALLIFLSDIHSLGLETAQ
                     GLVATDSWYWNKDATTRAWAQRYFAKMKKMPTSLHAADYSAVTTYLKAVQAAGSTDSD
                     KVMDQLHKIKVNDFYAQNGYIRADGSMIHDMYLMQVKTPAESKEPWDYYKITATIPGD
                     QAFGTKAESRCALWK"
     gene            2279..3163
                     /locus_tag="VKJ77_09360"
     CDS             2279..3163
                     /locus_tag="VKJ77_09360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018441363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC45517.1"
                     /translation="MEIFGIPLAAMMSQLLLGLVNGSFYAILSLGLAVIFGLLNVINF
                     AHGALFMLGAMLTWMGFSYFNVPYWTMLVLAPLVVGVFGIVIERTMLRWLYKLDHLYG
                     LLLTFGLTLVIEGVFRSIYGSSGQPYDVPELLSGATNLGFMYLPNYRAWVVLASLVVC
                     FATWFVIEKTRLGAYLRAGTENPKMVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPV
                     IQVSPLMGQSMIITVFAVVVIGGMGSIMGSILTGLGLGVIEGLTRVFYPEASATVVFV
                     IMALVLLVRPAGLFGKEK"
     gene            3163..>3734
                     /locus_tag="VKJ77_09365"
     CDS             3163..>3734
                     /locus_tag="VKJ77_09365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018432441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC45518.1"
                     /translation="MVRKVLYGVLLAGLIAAPFLGVYPVFMMKVLCFALLAAAFNLLI
                     GYTGLLSFGHAMFLASAGYSAGYAIQTLGFTPELGVIAGTAVATLLGLIVGLFAIRRQ
                     GIYFAMVTLALAQMVYFVFLQAPFTHGEDGMQGVPRGKLFGAISLSSDLTLYYVVLVV
                     MVLAFGFIVRVVHSPFGQVLIAIKENEPRA"
BASE COUNT          719 a         1045 c         1175 g          795 t
ORIGIN      
        1 aagcctacat gggcagcgcc gacgcctcac ttgcgggagc gcacgcatga gcacgatcgt
       61 ggaagaacgc cgcgcggaac aactgcgtga agcatcgact caggagccgg cgctcgaact
      121 cgttggcgcg caagcctggt acggtgaatc gcacatcctg cacggcgtgg acctgaccgt
      181 gcatcgaggc gaagttgtta cgctgctcgg acgcaacggt gcaggccgga ccacaacgct
      241 gcgcgccatc atgggtctta ccggccgtcg cacggggtcg attcgtatcg gtggccatga
      301 aaccgtcggc atgtcgacgc acaagatcgc gcactacggc gtggggtatt gtccggaaga
      361 acgcggcatc ttttcgagcc tctcatgcga agagaacctg cttctgccgc cgcttgtggg
      421 ccctgcgaaa gatgccatgt cgatcgatga aatctattcg atgtttccca atctcaaaga
      481 gcgccgcagc agccagggca cacggttgtc gggcggtgaa cagcaaatgc tggccgtcgc
      541 gcgcatcctg cgtaccggcg caaatttgct gctgctcgat gagatttcgg aagggcttgc
      601 gcctgtcatc gtccagacgc tcgcacgaat gatcatgatg ctgaaggcgc gcggctacac
      661 catcgtgatg gtcgaacaga attttcgttt tgctgcgcca ctcgccgatc gcttctatgt
      721 catggagcac gggaagatcg tcgagcattt caattccggt gaactcgaaa cgaaaatgcc
      781 ggttctgcac gagctgctcg gggtttgaaa acgttcaacg caagttcaac gcatcaacat
      841 gcggccaacc gcaagaacaa caactcaacg gagactgtaa tgaagaagaa gaccctcgcg
      901 cgcctgtcgg gaatttgcct ggcggttgcc gcggccacgg cctcgctgat ggccggcaac
      961 gtccaggcag cccccggcga cacggtgaag attggctata tcaccgactt gtccggcctg
     1021 tatgcggaca tcgatgggca gggtggcctc gagtccatcc gcatggcaat cgcggatttc
     1081 ggcggcaagg tgaacggcaa gccgatcgaa ctggtctacg cggatcacca gaacaaggcg
     1141 gacattgcgg catcgcgggc acgtgaatgg attgaccgcg acggcgtgaa tgtgatcatc
     1201 ggcggcacga attcggctac tgcgctctcg accaatcagg tcgccgctga gaagcatatt
     1261 ccgtacatca acatcggcgc gggcgcggat aacctgacca acgaacagtg ctcgccgtac
     1321 acagtccact acgcgtacga caccatggcg ctcgccaagg gcacgggatc ggccgtgacg
     1381 aagcagggcg gcaagacgtg gttcttcctg acggccgact acgcgttcgg caaggcgctc
     1441 gaaaagaaca cgtcggatgt ggtgaaggcg aacggcgggc aggtgctcgg cgcggtccgt
     1501 catccgttgt cggcctctga cttttcttca ttcctgttgc aggcgcaatc gtcgaaagcg
     1561 caggtgctgg gtctggcgaa cgcaggcggc gacacgatca actcgatcaa ggccgcgaag
     1621 gaattcggca tcaccaagac gatgaaggtc gctgcgctgc tgatcttcct gtcggacatc
     1681 catagtctcg gcctcgaaac cgcgcaaggc ctggttgcaa ccgacagctg gtactggaac
     1741 aaggacgcaa cgacgcgcgc ctgggcacag cgttacttcg ccaagatgaa gaagatgccg
     1801 acgagtcttc acgcagccga ttactccgca gtcaccacgt atctgaaggc ggtgcaagcg
     1861 gccggctcga cggatagcga caaggtgatg gaccagttgc acaagatcaa ggtcaacgac
     1921 ttctacgcgc aaaacggcta catccgcgcg gacggaagca tgatccacga tatgtacctg
     1981 atgcaagtga agacgccggc ggaatcgaag gaaccttggg attactacaa gatcaccgcg
     2041 accatcccgg gcgaccaggc cttcggcacc aaggcggagt cgcgctgcgc gctgtggaag
     2101 taagcggccg gtttatagcg gcactgcgga ttcaagtgtg acgcgtaggg tgctgaagct
     2161 tattgaagct tattgaagtt tacgcaccgt tcgtgatccg catgatcgat cgacgcatga
     2221 cggctcgctc atcttgagcc aggcggcatg cgtcgaaact actctgacgg cagattcaat
     2281 ggaaattttc ggcattccgc tcgcggcgat gatgagccag ttgctgctcg ggctggtgaa
     2341 cggatcgttc tacgccatct tgagccttgg cctcgcggtg attttcggcc tgctcaacgt
     2401 gatcaacttc gcccacggcg cgttgttcat gctgggcgcg atgctcacat ggatgggttt
     2461 ttcgtatttc aatgtgccgt actggacgat gctcgtgctc gcgccgttgg tcgtaggcgt
     2521 attcggtatc gtgattgaac ggacgatgtt gcgctggctc tacaagctcg atcatctgta
     2581 tggcttgctg ctgacgttcg gcctgacgct ggtgatcgaa ggcgtgtttc ggtctatcta
     2641 tggttcatcc ggccagccct acgatgtacc cgaactgctg tccggcgcga cgaatctcgg
     2701 cttcatgtac ctgccgaatt atcgcgcgtg ggtggtgctg gcatcgctgg tcgtgtgttt
     2761 cgcaacgtgg ttcgtgatcg agaaaacgcg gctgggtgcg tatcttcgcg cgggtaccga
     2821 gaacccgaag atggtcgagg cgttcggcat caacgtgcca ttgatggtca cgctcactta
     2881 cggtttcggc gtggcgctcg cggcattcgc gggcgtgctt gccgcgccgg tgatccaggt
     2941 gtcgccgctg atgggacagt cgatgatcat caccgtcttc gcggtggtcg ttatcggcgg
     3001 aatggggtcg atcatgggat cgatcctgac cggcctcggg cttggcgtga ttgaaggttt
     3061 gacgcgggtg ttctacccgg aagcctccgc gacggtcgtt ttcgtgatca tggcgctggt
     3121 gctgctcgtg cgcccggcgg gacttttcgg caaggaaaaa tgatggttag gaaagtgctc
     3181 tacggcgtgt tgcttgccgg cctgattgcg gcgccgttcc tcggcgtgta cccggtcttc
     3241 atgatgaaag tgctgtgttt cgcgctgttg gcggcagcct tcaatttgtt gatcggctat
     3301 acgggcctcc tctcgttcgg ccacgcgatg ttcctcgcca gcgccggtta ttccgccggt
     3361 tacgccatcc agacgctcgg ttttacgccg gaactcggcg tgattgcagg cacggcagtg
     3421 gcgacgctgc ttgggttgat cgtgggcttg ttcgcgatcc ggcgccaggg catctacttc
     3481 gccatggtca cgctggcgct cgcgcagatg gtctatttcg tgttcctgca ggcgccgttc
     3541 acgcacggcg aagatggtat gcaaggcgtg ccccgcggca agttgttcgg cgcaatcagt
     3601 ctcagttccg acctgacgct ctattacgtc gtgcttgtgg tgatggtgct ggcgtttgga
     3661 tttatcgtgc gcgtggtgca ttcgccgttc gggcaagtgt tgatcgcgat caaggagaat
     3721 gagccgcgcg cgat
//
LOCUS       DATGBK010000660         2065 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_216414, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000660 DATGBK010000000
VERSION     DATGBK010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216414"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..478)
                     /locus_tag="VKJ77_09370"
     CDS             complement(<1..478)
                     /locus_tag="VKJ77_09370"
                     /inference="COORDINATES: protein motif:HMM:NF024140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP four helix bundle domain-containing protein"
                     /protein_id="HMC45519.1"
                     /translation="MSTITAALGGYATLGIKDAAVLVDKTYDESLMSINYARAAATDF
                     AAMRAAFARFWIADEPATRTKLEQEINTLTKSLNEDLAVAVQRSQSNRAKQAGANVRR
                     EVAAWTSMRERLLDRTRLDTNWEMLDQYGSKVDEQIDFLVNYTAGDGFIYRQTARAT"
     gene            788..1147
                     /locus_tag="VKJ77_09375"
     CDS             788..1147
                     /locus_tag="VKJ77_09375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45520.1"
                     /translation="MPDRNVSKHTRKAAAIVLVVAIVSGFGTLGGLAGSLYAVSQKGR
                     EFTPREVTLKRGEAILVVNDDADLRHHAYIDSDKFTFDSGDQEPGSKTSITFPVAGTF
                     EVLCAIHPKMKLSVHVQ"
     gene            complement(1172..>2065)
                     /locus_tag="VKJ77_09380"
     CDS             complement(1172..>2065)
                     /locus_tag="VKJ77_09380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45521.1"
                     /translation="NVLCPDFEFLAGLSVLMLMSGCLAEGTFLGEAVLRAMDRATRYM
                     RENTELMFRAACGFFFVAIWAFGGILLTPELKTDSNVVAAIQLGIAAGMLSRRTMPLS
                     AMGIAALFAIAIWQYGIFHLADYPVFLGIAGYLALVGFQRDFFGARPIDVVRWTAGVT
                     LMWASVEKWAYPEWSFPLLSSHPQMAMGLDPVFFMRAAGAVEFALAFALMWSPLVRRM
                     AAAILAGMFVSAVLEFGKVDLIGHTLIVAALLAIIADNGGEKVLVRYPWLAPVGYASA
                     LGMFLSLYYVAHALIFGTSLT"
BASE COUNT          458 a          634 c          606 g          367 t
ORIGIN      
        1 ccgtcgcgcg agcggtctgc cggtagatga atccgtcacc cgcagtgtaa ttgaccagaa
       61 agtcgatctg ttcgtcgacc ttgctgccgt attgatcgag catttcccag tttgtatcga
      121 gccgcgtccg atcgagcaga cgttcacgca tgctggtcca ggctgccacc tcgcgccgca
      181 cattggcgcc tgcttgcttg gcgcgattgg actgcgagcg ctgcaccgcg actgccagat
      241 cttcgttcag cgacttggtg agcgtgttga tctcttgttc aagcttggtc cgcgtagcgg
      301 gctcgtcggc aatccaaaag cgggcgaacg ccgcgcgcat ggcggcaaag tcggtggccg
      361 ccgcgcgcgc ataattgatc gacatcaagg attcgtcata ggtcttgtcg accaaaaccg
      421 cggcgtcttt gatgcccagg gttgcgtagc cgccaagcgc cgccgtgatt gtgctcatga
      481 ccaggaacgc gatcagaatc cgaccgcgga tggtcacgcc aaacgaggca gcccggtgca
      541 ggccgaaatg ccatcggccc accgttccgg caaagtatga cgctatttta ttgcggtgca
      601 ttggcgcgcc tggttttcga ccgttccaag cgtacatggg gccagttaaa gcgtactgag
      661 ttaccgattc aatcctgcgc agttcgttaa cgccgcctta accgcacatc gccacgttgg
      721 cgtagcctgg ggcgatcaac tgctgggcga ggcgggtcgg gctctattcg ccatgccgag
      781 gaccgagatg ccagatcgga atgtcagcaa gcacacgcgc aaggccgcgg cgatcgtgct
      841 ggttgtcgcg attgtgagcg gttttgggac actggggggc ctcgccggat cgctatatgc
      901 ggtctcgcaa aagggccgcg aattcacgcc gcgcgaagtg acgctaaaac gcggagaggc
      961 cattctggtc gtcaatgacg acgccgattt acgccatcac gcctacatag attcagacaa
     1021 atttactttc gactccggcg atcaagagcc gggcagcaag accagcatca catttccggt
     1081 ggccggcaca ttcgaagtgc tgtgtgccat ccaccccaag atgaagctca gcgttcacgt
     1141 tcaataacaa ttcgcgaagc gggtgctggg tttaagtcag cgacgtgccg aagatgagcg
     1201 cgtgcgccac atagtagagc gacaaaaaca tgcccagcgc ggacgcatag ccgactggcg
     1261 caagccacgg atagcgcacc aacaccttct cgccgccgtt atccgcaata atcgctagca
     1321 gcgcggccac gatcagcgtg tgaccaatga ggtccacctt gccgaattcc agtacggcgc
     1381 ttacgaacat gcccgccaaa atagccgcgg ccatgcgacg caccaaaggc gaccacatca
     1441 gtgcgaatgc cagggcgaat tcaaccgcgc cggccgcgcg catgaagaac accggatcga
     1501 gccccatcgc catttgcgga tggctgctca agagcggaaa ggaccattcc ggataggccc
     1561 atttctcgac cgaagcccac atcaaggtga caccggcggt ccagcgcacc acgtcgatcg
     1621 gccgggcgcc gaagaagtca cgctgaaatc cgacgagcgc caggtaaccg gcaatgccca
     1681 gaaacacggg ataatccgcg aggtggaaaa ttccatattg ccaaatggcg attgcgaata
     1741 gggccgcgat gcccattgcc gacagcggca tggttcggcg cgacagcatt ccggctgcga
     1801 tgccaagctg aatggccgcg acaacattgg agtcggtctt caattccggc gtcagcaaga
     1861 tgccgccgaa cgcccagatc gccacgaaaa agaacccgca ggcagcgcgg aacatcagtt
     1921 cggtattctc gcgcatgtag cgcgtcgccc ggtccatggc gcgcagcacc gcctcgccga
     1981 gaaacgtccc ttcggccaga caaccgctca tcagcatcag aacggacagc ccggccagga
     2041 actcgaagtc gggacacagc acgtt
//
LOCUS       DATGBK010000661         1576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_123780, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000661 DATGBK010000000
VERSION     DATGBK010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123780"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..934)
                     /locus_tag="VKJ77_09385"
     CDS             complement(<1..934)
                     /locus_tag="VKJ77_09385"
                     /inference="COORDINATES: protein motif:HMM:NF019268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HMC45522.1"
                     /translation="MKTILFALGILALPAAAFAQSSPAPSPAAVSPSPSPTPTPAPKA
                     FTLNGFADTGIVSASAASRTNAITGRVFDTLSGQPQFHNLNLTATQTGTIGGKIELSA
                     GDDADVINSYPKFGAQSELDITQAYLSLGAGRFTLIGGKFESLAGAEVIESPSNLDFS
                     RSILFGFAVPFTHTGARLTYAATPQVSLIAGLNKGWDTTRTVAANGDNNRLTAEYGVA
                     WNPGKALSLTAQSYSGIVEPADLAANQRRSLVDLVATYHLNDKLQFVANYDTGSQTNT
                     ALLNGAGTVINASGKPAWNGLAGYVSDALTAKLSA"
     gene            complement(942..>1576)
                     /gene="kdpC"
                     /locus_tag="VKJ77_09390"
     CDS             complement(942..>1576)
                     /gene="kdpC"
                     /locus_tag="VKJ77_09390"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015876569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HMC45523.1"
                     /translation="PFNGSSMNLTTPAAPKESTLSHLVTSLLYTVATVVVFGFIYPAA
                     ITLLGGLFFPHQAAGSLVLVNGKPAGSAIIGQLFAKPGYFHGRPSAAGKNGYDPTSTG
                     GTNLGPTSKKLIDATKATIASVRKENPAQSGPPPMDLVTSSGSGIDPDVSPEAAYYQI
                     ARVATARHMDPTVLRTVVDAHVAGRTLGILGEPRINVFELNRALDAQSKS"
BASE COUNT          299 a          435 c          506 g          336 t
ORIGIN      
        1 ttgcggatag cttcgctgtc agcgcgtcgc tcacgtatcc agcgagcccg ttccaggcag
       61 gcttgccgct cgcgtttatc acggtgcccg cgccgttcag tagcgctgtg ttcgtttgcg
      121 agccggtgtc gtaatttgca acgaattgca gcttgtcgtt gagatggtat gtcgcgacca
      181 gatcgacgag cgaccggcgc tggtttgccg caagatccgc cggttcaacg attccgctgt
      241 agctctgcgc cgtaagcgat aacgctttgc caggattcca ggcgacacca tattcggcgg
      301 tcaaacgatt gttgtcaccg ttggcggcga ccgttcgcgt cgtatcccag cctttgttca
      361 atcccgcaat gagtgagact tgcggcgtcg cggcgtaggt cagccgggcg cccgtgtgcg
      421 taaacggaac ggcaaaaccg aacagtatcg agcgggaaaa atccagattg cttgggctct
      481 cgatcacttc ggcgcccgcg agtgattcga attttccgcc gatgagcgta aaccggccgg
      541 cacccagcga aagatacgcc tgcgtgatgt ccagctccga ctgcgcaccg aatttgggat
      601 acgagttgat cacgtcggcg tcgtcgccgg cactcagttc aatcttgccg ccgatcgtgc
      661 cggtttgcgt cgcggtaagg ttgaggttat ggaactgcgg ctgaccgctt aatgtatcga
      721 acacgcggcc ggtaatggcg ttcgtgcgac tagcagcgga agccgaaacg attcccgtat
      781 cggcgaagcc gttcagcgta aacgctttcg gcgccggcgt tggcgttggg gacggggacg
      841 gcgagacggc cgcaggtgac ggcgcgggtg atgattgggc aaatgcagcc gccggcagcg
      901 ctaggatgcc gagcgcaaag aggatggttt tcacgggact cctatgattt ggattgtgcg
      961 tcaagcgcac gattaagttc gaagacgttg atgcgtggtt cacccagaat gccgagcgtg
     1021 cggcccgcaa cgtgcgcatc aacaaccgtg cgcaatacgg tcgggtccat gtggcgggcc
     1081 gtcgcgacgc gcgcgatttg atagtaagcg gcttccggcg aaacgtccgg atcgatccca
     1141 ctgccgctcg atgtgacaag gtccatcggc ggcggaccgc tttgggctgg gttttctttt
     1201 cttaccgaag caatcgtcgc ttttgtcgcg tcgataagct tcttacttgt cggcccgaga
     1261 ttcgtgccgc ccgtgctggt tggatcgtag ccgttctttc cggcagccga cggacggccg
     1321 tggaaatacc cgggctttgc aaaaagctga ccgataatcg ctgaacccgc cggtttaccg
     1381 ttcacgagca caagcgagcc ggcggcctga tgcgggaaga aaagccctcc gagtagcgtg
     1441 atggcggcgg gatagatgaa gccgaaaacc acgaccgttg cgacggtgta caggagtgac
     1501 gtaacaaggt gggacagcgt gctttctttt ggcgccgctg gcgtggtgag gttcatgctg
     1561 ctcccgttaa atggaa
//
LOCUS       DATGBK010000662         1638 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286009, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000662 DATGBK010000000
VERSION     DATGBK010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286009"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..804)
                     /locus_tag="VKJ77_09395"
     CDS             complement(<1..804)
                     /locus_tag="VKJ77_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HMC45524.1"
                     /translation="MKDITRRLASFVAQTQWEDIPPKVRHEAKRALVNYFAVALAGCS
                     DPGISKAVNVYGRFSSGREAGLVGRGEKTDILNAAALNAMSANVFDFDDTHLPTIIHP
                     TAPVAAPLFALAQKSPLSGRQWLLAFVLGVEIECRLGNAVSPGHYQRGWHITSTCGVF
                     GATAATAKALDLDTAQIGWALGNASAQSSGLVETLGSMSKSVSVGNAARNGLLSALLA
                     QEGFAGPERPIEGERGFLRVMSEATEADVDAAFATLGSEWALLSNTYKPY"
     gene            complement(839..1618)
                     /locus_tag="VKJ77_09400"
     CDS             complement(839..1618)
                     /locus_tag="VKJ77_09400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45525.1"
                     /translation="MKGRSALVTGSSDGLGFAMAEGLARSGCDVVLHGLEPPESVRDS
                     LARIEQEYAVKAAYVQADLTDPGAVSTLVSTARDHMGGIDILINNAVVRHFASIEDFP
                     ADRWNQALAVNLTAAFHAIQFVLPDMRARGWGRIFNMTSVYGSRATPNRVDYVTTKTA
                     LLGLTRAVAVETVHQGITCNAICPGTVKTPNIESRIEKLMEEKGLGHSDAVKQFLTGK
                     QPTGEFVSASHVADLVVFLCSDAGSQITGAMMPMEGGWLAG"
BASE COUNT          312 a          542 c          463 g          321 t
ORIGIN      
        1 ataaggcttg tacgtattcg ataacagcgc ccattcactg ccgagcgtgg cgaatgcggc
       61 gtcgacgtca gcttcggtgg cctcgctcat cacgcgcagg aagccgcgct cgccttcgat
      121 gggtctctct ggtccagcga aaccttcttg cgccagcaac gccgagagca ggccattacg
      181 agccgcgttg cccacgctga cgctcttcga catgctgccc agcgtttcga ccagcccgga
      241 cgattgcgcc gatgcattgc ccaatgccca gccgatttgg gcagtgtcca gatccagggc
      301 cttcgcggta gctgccgtcg cgccgaacac gccgcaagtg gaggtgatgt gccagcctcg
      361 ctgataatga ccgggcgata ccgcattgcc cagccggcac tcaatttcca cgccgagtac
      421 gaacgccagc agccattgtc tgccgctcaa cggcgacttc tgcgcgagcg cgaacaacgg
      481 cgctgccacc ggcgctgtgg ggtggatgat ggttggcagg tgggtatcgt cgaaatcgaa
      541 gacgttcgcg ctcatcgcgt tcagcgcggc cgcattcagg atgtcggtct tctcgccgcg
      601 tccgacgagc cccgcttcac gccccgaact gaagcggccg tacacgttca cggctttact
      661 gatacccgga tctgagcaac ccgcgagcgc cactgcgaag taattcacca gtgcgcgttt
      721 cgcctcgtga cgcaccttcg gcggaatgtc ttcccactgc gtttgcgcga cgaacgaggc
      781 cagcctacgc gtgatgtctt tcatgaatgc ctcctccctc cgtaccgaga cgatgcgttc
      841 agccggcgag ccagccgcct tccatcggca tcatggctcc tgttatctga ctgcccgcgt
      901 ccgagcatag gaagacgaca agatccgcga catgtgacgc gctgacgaat tcgccggtag
      961 gttgcttgcc ggtaaggaac tgcttgacgg cgtcactgtg cccaagccct ttctcctcca
     1021 tcaacttctc gatccggctt tcgatattcg gcgtcttcac cgtccccggg cagatcgcat
     1081 tgcacgtaat gccctgatga accgtctcga ctgcaaccgc gcgcgtcaac ccgagcagcg
     1141 ctgtcttggt cgttacgtag tccacccggt tcggcgtggc tcgtgaccca tacaccgacg
     1201 tcatgttgaa aatgcggccc cagccacgcg cacgcatgtc gggcagaacg aattggatgg
     1261 catgaaacgc agccgtcagg ttgactgcca gcgcctggtt ccatcggtcg gcgggaaaat
     1321 cctcaatcga cgcaaagtgc cggacgaccg cgttgttgat caggatatcg atgccgccca
     1381 tgtgatcgcg cgctgtgctc accagcgtcg agaccgcacc ggggtccgtc aggtccgcct
     1441 gaacataggc agccttgacc gcgtattcct gctcgatccg ggccagggaa tcgcgcacgc
     1501 tttccggcgg ttcgagtcca tgcagcacga cgtcgcagcc cgaacgagcg aggccttcag
     1561 ccatcgcaaa tccgagccca tccgatgatc cggtaaccag cgcagacctt cccttcataa
     1621 aaagtaatcc taatgaaa
//
LOCUS       DATGBK010000663         2025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_170270, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000663 DATGBK010000000
VERSION     DATGBK010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170270"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..606)
                     /gene="hisB"
                     /locus_tag="VKJ77_09405"
     CDS             complement(19..606)
                     /gene="hisB"
                     /locus_tag="VKJ77_09405"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006400582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HMC45526.1"
                     /translation="MRIAEVVRNTSETQIRVKLDLDGTGKQKLATGVPFLDHMLDQIA
                     RHGLFDLEVEAHGDLHIDDHHTVEDTGITLGQAVAKAIGDRKGIRRYGHSYVPLDEAL
                     SRVVIDFSGRPGLEFHVPFTRARIGTFDVDLTIEFFRGFVNHAGVTLHIDNLRGINAH
                     HQVETVFKAFGRALRMAVELDERAAGQIPSTKGSL"
     gene            complement(636..1706)
                     /gene="hisC"
                     /locus_tag="VKJ77_09410"
     CDS             complement(636..1706)
                     /gene="hisC"
                     /locus_tag="VKJ77_09410"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HMC45527.1"
                     /translation="MTRPQDILRPDVLAMTCYPVPNSTGLVKLDAMENPYRLPEQLAA
                     ELGERLAAVALNRYPEPRPTALLEKIKRVMQVPAACEVLLGNGSDELISMMSMACAKP
                     GAAVVAPVPGFVMYAMSAQFAGLEFIGVPLNADFTLDVDALIAAIETHNPALVYLAYP
                     NNPTGTLYDDADIECVIAAASNSLVVIDEAYQPFAQQSWLPRAADFDNVVVMRTMSKL
                     GLAGIRLGYLAGKASWITEFDKVRPPYNVNVLTQAAADFMLDHLDVLDAQATELRAER
                     TRLEDAIKSLPGATVFPSAGNFLLVRVPDAAVVFETLLTSRVLIKNVSKMHPLLANCV
                     RLTVGSAEENAQMIAALKLALH"
     gene            complement(1797..>2025)
                     /locus_tag="VKJ77_09415"
     CDS             complement(1797..>2025)
                     /locus_tag="VKJ77_09415"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HMC45528.1"
                     /translation="LGDYCAGPNHVLPTSRTARFSSPLGVYDFIKRSSVIEVSAEGAQ
                     TLGEIAAELAYGEGLQAHARSAEYRMKNTSQ"
BASE COUNT          401 a          610 c          593 g          421 t
ORIGIN      
        1 gcgttattta gaaggcgctt aaaggctgcc cttggtcgat ggaatctgcc ctgccgcgcg
       61 ctcgtccagc tcaacagcca tgcgcaatgc gcggccgaat gccttgaaga cggtttccac
      121 ctgatgatgc gcgttgatgc cacgcaaatt gtcgatgtgc agcgtcacgc ccgcgtgatt
      181 cacgaaaccg cggaagaatt cgatggtgag atcgacgtcg aacgtgccaa tgcgcgcacg
      241 cgtgaacggg acgtgaaact ccagccccgg ccggcccgaa aaatcgatca ccacacgtga
      301 caacgcttcg tcgagcggca cgtatgaatg gccgtaacgg cgaatgccct tgcggtcgcc
      361 gatcgccttc gccaccgcct ggcccagcgt gatacccgtg tcttccaccg tgtggtggtc
      421 atcgatatga aggtcgccat gcgcttcgac ttcaaggtcg aagaggccgt gacgcgcgat
      481 ctggtcgagc atgtggtcga gaaacggcac accggtggcg agcttttgct tgccggtgcc
      541 gtccaggtcg agcttcacac ggatctgcgt ttcgctggtg ttgcgaacga cttccgcaat
      601 gcgcatggtg tttcctttga gacttttaag agatttcagt gcagcgcgag tttcagagcg
      661 gcgatcattt gcgcattctc ttctgccgat ccgaccgtca aacgcacgca attcgccaat
      721 aacggatgca ttttactcac gtttttgatc aaaacccgcg atgtcagcag ggtttcgaag
      781 acgacagcgg catcaggaac acggacgagc aggaagttgc cggcgctcgg gaaaacggtc
      841 gcgccgggca gcgacttgat tgcgtcttcc agacgcgtgc gctcggcacg gagttcggtg
      901 gcttgcgcat ccaggacatc gaggtgatcg agcatgaaat ccgccgccgc ttgcgtcagc
      961 acattgacgt tgtatggcgg gcgcacttta tcgaattccg tgatccatga cgccttgccc
     1021 gccagataac ccaggcgaat acccgccaga ccgagcttcg acatcgtccg catcacgact
     1081 acgttgtcga aatcagcagc gcgcggcagc cagctttgct gcgcgaacgg ttgataagct
     1141 tcatcgatta ccaccaggct attcgatgcc gccgcgatca cgcattcgat atcagcgtcg
     1201 tcgtaaagcg tgccagtcgg attgttcgga tacgcgagat acacgagcgc cgggttgtgc
     1261 gtttcgatcg cggcgatcag cgcatcgaca tcgagcgtga agtccgcgtt caacggcacg
     1321 ccgataaact cgagccccgc gaactgcgct gacatcgcgt acatcacgaa gccgggaacc
     1381 ggcgcaacaa ctgcggcgcc gggtttcgcg cacgccatcg acatcatgct gatcaattca
     1441 tccgaaccgt tgccaagcag cacttcgcac gcggcgggca cctgcatgac gcgcttgatc
     1501 ttctcgagca acgcggtcgg gcggggctcc gggtatcggt tcaacgcgac ggccgctagc
     1561 cgttcgccca attcagcagc cagctgctcc ggcaaccgat acggattttc catcgcgtcg
     1621 agcttcacga ggccggttga gttcggcacg ggataacacg tcattgcaag gacgtcgggg
     1681 cgaagaatgt cttgtggtcg tgtcatggta ttgccggact ccagcgccgg acgttgggcg
     1741 gctctaaggc cgcctcgatg tttaactcgg tttgcgtctt tactttgtca ttgctactac
     1801 tgcgacgtat ttttcatccg atattcagcg ctgcgcgcat gcgcctgcag gccttcgcca
     1861 tacgccagct cggctgcaat ctcgccgagc gtctgcgcgc cttccgcgct gacttcaatc
     1921 acgctcgagc gcttgatgaa gtcgtacacg cccagcggcg atgaaaaccg cgcggtacgt
     1981 gatgtcggca gtacgtggtt cggccccgcg cagtaatcgc caagg
//
LOCUS       DATGBK010000664         3569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286042, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000664 DATGBK010000000
VERSION     DATGBK010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3569
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286042"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(467..2104)
                     /locus_tag="VKJ77_09420"
     CDS             complement(467..2104)
                     /locus_tag="VKJ77_09420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC45529.1"
                     /translation="MLRNLSIRACLSAMIAFFGVVLLLGAAAGLLSLRASNASLQQMY
                     TVDTPAVADLEGSAGQLLRLRLALATYASLVDLNDQDGAAAVLKRFDQYLKVSNDRLG
                     HYLSHAGTDDDEQRLIKDMQDKRATFLQNGIEPAMTALKAGDKTAFQQLQAHQLPSLY
                     NAYEKAMLTLEQLQIDHGAQRYQDAHDRFYAISIAVAVGMVLALLFSWLGRVVLVRAI
                     VHPVDATIAQFERIASGDLTGHIAVTSDNEMGKLATALRKMQDSLIATVNTVRAGTES
                     IDTGVREIASGNTDLSQRTEEQAASLEETAASIEELNSTVKQTAENARQASSLAQGAS
                     SLAAEGGELTQQVVGTIHQIVDDSHRMADIVGVIEGIAFQTNILALNAAVEAARAGEQ
                     GRGFAVVASEVRSLAQRSAAAAKEIKGMIGESTARVQSGAQLVERSGSTMTEIVKAIV
                     RVSAIMSEIAAAAIEQSSGIDQVNVAVAQMDEVTQQNAALVEQAAAAAGSLEDQSRRL
                     TAAVAVFRTEASQASNAPGMRGRGAEMERVVHTLAHV"
     gene            complement(2205..3482)
                     /locus_tag="VKJ77_09425"
     CDS             complement(2205..3482)
                     /locus_tag="VKJ77_09425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45530.1"
                     /translation="MFRRVTTKVLILLCVMYCITYIDRVNVSTAAAQFGKEFDLSHTQ
                     IGFVFSAFAYPYLVIQIFGGWLADRFGPRRTLTICAFIWAGATVLTGLAGGLVSLVFA
                     RLLLGLGEGATFPAATRAMSNWTTPERRGFAQGITHAASRIGNAAAPPLVTWLMLTTN
                     WRGAFVITGMVSVLWALIWVWYFRDNPREHRSMSSVEADRLPAYNLAKISGRVPWRAL
                     LRRMLPVTAVYFCYGWVLWLFLGWVPQYFQHQHMQLGKSALFASGVFLTGVLGDWLGG
                     ELTDFIMRRTGNLRLARNVMVSTCMFLALLALAPIMLVHSLSIPLAALALSVGFFFNE
                     MTIGPMWAVPMDIAPQYAGTASGIMNMGSAGAAIISPVVGGWIIDHTGNWNLPFIVSM
                     ALMLSGTLLAFVMRPDRQLPGEASSGAPSTGYA"
BASE COUNT          705 a         1091 c         1052 g          721 t
ORIGIN      
        1 cgctgcttcg gtctcgcggg atgctcgctt cattgggaag ggtatcgaag actgcgctcg
       61 gcatgctgtt tgtcgtgctg ggcgtcgtta tcctccttgg atatgaccgg aatatagagt
      121 cagcgctgct gtcggtttcg ccgatgtggc tgacccggct gacgacatcg atataactgc
      181 gactgctgta atatgaaatg agtgtttccg tgttgttcaa tgtaattcga tatcctaatt
      241 atagaaaatc gattaaacat ttcggcagga tgtgctcgcc tggtggcgcc gaagtgcatc
      301 agttaaaaaa tttatgttca ctgttgtaat ccgttggtcc ctgctgtcga atcacttgat
      361 gaatcgatga tcaacattga tccacacagg caatccgcct gatctcacaa ttactttgga
      421 gttttcaaat gaatatgccc gtgcgcctgc tcacaggaat gacgtgtcag acatgcgcca
      481 gggtgtgcac tacacgctcc atttcagcgc cgcgcccgcg catacccggc gcatttgacg
      541 cctgggacgc ttccgtgcgg aacacggcca cagccgccgt aagccgacgt gactgatctt
      601 ccagcgagcc cgctgcagcg gctgcctgct cgacgagcgc ggcgttctgt tgcgttacct
      661 cgtccatttg cgcgaccgct acgttcacct gatcgatgcc cgaactctgc tcaatcgccg
      721 ccgcggcaat ctcgctcatg atcgcgctaa cgcggacgat cgccttgacg atttccgtca
      781 tggtcgatcc cgagcgttcg accagttgcg cacccgactg aacccgcgct gtcgattctc
      841 cgatcatgcc cttgatctct ttggcggccg ctgcgctgcg ctgcgcgagc gaacgcactt
      901 cgctcgctac cacggcaaaa ccacgccctt gctcgcccgc gcgtgccgct tcgaccgccg
      961 cgttgagcgc gaggatattg gtctggaacg caatgccttc gatgacgcca acaatatccg
     1021 ccatgcggtg cgagtcgtcg acgatctgat ggatcgtgcc gacgacctgc tgggtcaact
     1081 ctccaccttc ggcggcgagg ctcgacgcgc cttgcgcaag cgagctggcc tgcctggcgt
     1141 tctcggcggt ttgcttgacc gtggagttca gttcctcgat gctcgcggcg gtctcttcca
     1201 gcgaggccgc ctgttcctcg gtgcgttgcg acaggtccgt gttacccgat gcaatttcac
     1261 gcacgccggt atcgatagat tccgttcccg cacgaaccgt gttcaccgtc gcgatcagcg
     1321 agtcctgcat cttgcgcagc gcggtcgcca gtttgcccat ttcgttgtca ctcgtcacgg
     1381 cgatgtggcc ggtgaggtca ccactcgcga tgcgctcgaa ttgcgcgatg gtggcatcga
     1441 ccgggtgaac gatcgcacgc accagcacta cgcgtccgag ccacgaaaac agcagcgcca
     1501 gcaccatgcc caccgcaacg gcaatactga tggcatagaa gcgatcatgc gcgtcctgat
     1561 agcgttgcgc gccgtggtcg atctgcaatt gctcaagcgt gagcatcgcc ttttcgtacg
     1621 cgttatagag tgaagggagc tggtgagcct gcaactgctg gaacgcggtt ttgtcgccgg
     1681 ccttgagcgc ggtcatcgcc ggctcgatcc cgttttgcaa gaacgtggcg cgcttgtcct
     1741 gcatgtcttt gatgagacgc tgctcgtcgt cgtccgtccc cgcgtggctc aaatagtgcc
     1801 caaggcggtc gttcgatacc ttcagatatt gatcgaagcg tttgagcacc gctgcggcac
     1861 cgtcctgatc gttgagatcg acgagcgacg cgtaggtcgc gagcgcaagg cgcaggcgca
     1921 gcaactgtcc agcgctgccc tccaggtcgg cgacggcggg tgtatcgacc gtgtacatct
     1981 gctgtagcga cgcattgctc gcgcgtagcg acagcagtcc cgctgcggcg ccaagcagca
     2041 gcaccacgcc gaagaaggcg atcatcgcgc tcaaacaggc gcgaatcgac aggtttctca
     2101 gcatttcttt ttcctttttt taccgcgccg ataggcaagc tcatcgctgt gccacgcgca
     2161 gatccgttgt gttgttctaa ggcgggttgc ttaagactca cccgtcaggc atacccggta
     2221 gagggcgcgc cgctactcgc ttcacccggc aactgccgat ccggcctcat cacgaaagcg
     2281 agcagcgtgc cgctcagcat tagtgccatc gagacaatga acgggagatt ccagttgcct
     2341 gtgtggtcga tgatccagcc accgaccacg gggctgataa tcgccgcgcc cgccgagccc
     2401 atgttcatga tgccgctcgc ggtgcccgcg tattgggggg caatgtccat cggcacggcc
     2461 cacatcggcc cgattgtcat ctcgttgaag aagaagccca ctgacagcgc gagcgcagcg
     2521 aggggaatcg acaacgaatg gaccagcatg atcggcgcaa gcgccagtag cgcgaggaac
     2581 atgcacgtcg agaccatgac gttgcgcgcg agtcgcagat tacccgttcg ccgcatgatg
     2641 aaatcggtca gctcgccgcc aagccagtcg cccagcacgc cggtcaggaa tacgcctgac
     2701 gcgaacagcg cggatttgcc cagttgcata tgctgatgct ggaaatactg cggcacccag
     2761 ccgagaaaga gccacaggac ccagccgtag cagaagtaca ccgcggtgac gggcagcatg
     2821 cgtcgaagca aggcgcgcca cggcacgcgg ccgcttatct tcgccaggtt gtaggcaggc
     2881 agccggtcag cttcaacgga actcattgag cgatgctcgc gcgggttgtc gcggaaatac
     2941 cagacccaaa tgagcgccca cagcacgctc accatgccgg taatgacaaa tgccccgcgc
     3001 cagttcgtcg tgagcatgag ccacgtcacc agtggcggcg cggccgcgtt gccgatgcgc
     3061 gaggcagcat gggtgatgcc ttgtgcgaag ccgcggcgct cgggcgtcgt ccagtttgac
     3121 attgcacggg tggctgccgg gaaggtcgcg ccttcgccga gacccagcag caggcgggca
     3181 aacaccagcg acacgagacc accggctagc cccgtcagca cggtcgcacc ggcccagatg
     3241 aacgcgcaga ttgtcaacgt ccggcgcgga ccaaagcgat ccgcaagcca gccgccgaag
     3301 atctgaatga cgagataggg atacgcaaag gctgaaaaaa caaagcctat ttgagtgtgc
     3361 gaaaggtcga attccttacc gaactgcgcg gctgcggtgc tgacgttgac gcggtctatg
     3421 tacgtaatgc agtacatgac gcacagaagg atgagcacct tcgtggtaac gcggcgaaac
     3481 atggtgtaag tccccacaac gtgtagtcac atggttcgct gtgtctgccg gcggcatcat
     3541 tgatgcctga ttccgaatcg gcagatcgc
//
LOCUS       DATGBK010000665         1870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_170328, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000665 DATGBK010000000
VERSION     DATGBK010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170328"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /locus_tag="VKJ77_09430"
     CDS             <1..407
                     /locus_tag="VKJ77_09430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005434150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45531.1"
                     /translation="RPAIANALRLLTLSDGVKTLLRSGKISAGHARALLALPPDRRET
                     LAKRIADEGLTVRAVEQLGQATGGTKRARTAPALKRSSDDDELLEKLRYRFAAHVNLV
                     ARERGGVIEIRYADAADLLRITDVLLGESSGS"
     gene            404..1102
                     /locus_tag="VKJ77_09435"
     CDS             404..1102
                     /locus_tag="VKJ77_09435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45532.1"
                     /translation="MKRTLVACVAAFALLGAAPAPKYPPVPKNGQTAIVNAYLHDLQS
                     GAYADAFALLNDQARGYYRNAANFRSIYDADGYRVQKYTLLGARGDANGRVYFARETA
                     SFHDHARNVDNTVTATLPIGVIAVKGGWRIKDPGHPWRAFASTASVKASDLTVSVKKV
                     SFFADRIEVVATFANTGDGFVTVLPYRRSVLRDDLGGVYRVIETKDWGLTDKTLFLGL
                     RLAPSGQYTGVLNF"
     gene            1332..>1870
                     /locus_tag="VKJ77_09440"
     CDS             1332..>1870
                     /locus_tag="VKJ77_09440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45533.1"
                     /translation="MRRLMVSFLAAGSVVLLSACGQGGSAFNAGNNVKVDHVQLETFG
                     NPPGVFKVVPGGFITVSAIGLRGSQNVQVTGDLNYTFDASISPGGQLFDNTISGQQTA
                     CGAFTGSTGTPVVPAANLVVSATSPNTVVLVAPTIAAANALFSVPAPAAPASYCILLN
                     AHHVIDGVTGSTVIDVSNNA"
BASE COUNT          351 a          577 c          559 g          383 t
ORIGIN      
        1 gccggccggc aatcgcgaat gcgttgcgcc tattgacatt atccgacggc gtgaagaccc
       61 tgttgcgctc gggcaagatc tcggccgggc acgcccgagc cttgttagcg ttgccgcccg
      121 accggcgtga aacacttgca aaacggatcg ccgatgaggg gctcaccgtg cgcgctgtcg
      181 agcagctcgg acaggcaacg ggcggcacga agcgcgcgcg aactgcgccg gcgctcaaac
      241 gctcgagcga tgatgacgaa ttgcttgaga agttgcgtta ccggtttgcc gcgcacgtga
      301 atcttgtcgc gcgcgagcgc ggcggcgtca tcgaaatccg ctacgcggac gccgccgatc
      361 tgttgcgcat taccgatgtt ctgctgggag agagttcagg ttcatgaagc gtaccctcgt
      421 cgcatgtgtt gcggcctttg cgttgctagg cgcggcgccc gcacccaaat atccgccggt
      481 tccgaaaaac ggtcagacgg ccatcgtgaa cgcatatttg catgatttgc aaagcggcgc
      541 atacgccgat gcatttgcct tgctcaacga tcaggcgcgc ggctattatc gcaatgccgc
      601 gaacttccgc agcatttacg acgccgacgg ataccgcgtg caaaaataca cgttgctggg
      661 tgcgcgcggc gacgccaacg gtcgcgtcta cttcgcacgt gaaacagcca gcttccacga
      721 tcacgcgcgc aatgtcgata acaccgtgac ggcgacgctc ccaatcggcg tcatcgccgt
      781 taagggcggc tggcgcatca aggaccccgg ccatccgtgg cgagcctttg cctcaaccgc
      841 gtcagtcaaa gcgagtgacc tgaccgtgag cgtgaaaaag gtctcgtttt ttgccgaccg
      901 gatcgaggtg gtggcgacgt ttgcgaatac cggcgacggc tttgtcaccg tgctgccgta
      961 tcggcgcagc gtgttgcgcg acgatctggg cggcgtgtat cgcgtgatcg aaaccaaaga
     1021 ttggggcctg accgataaga cgctgtttct ggggctgcgt ttagcgccga gcggccaata
     1081 taccggcgtc ctcaatttct agtctacccg gatcgacgat cgcgcccggg cattcaccct
     1141 cacgatcgcg ccggcattac gcgaaggagc ggacgctccg tttacgattg acgtcccgaa
     1201 tctgcaacca gctaagggct aagtcaaata acgagaggaa ccgtcagagc ggtagcggaa
     1261 atcgcgcccg tccggtggcg gagcttttaa gaagtccccc ggtctttttc cgtgtcttac
     1321 gggagttctt catgcgtcgt ctcatggttt catttcttgc agcgggttcg gtcgtgctgc
     1381 tatccgcctg cggccaaggc ggcagcgcct tcaatgccgg caataatgtt aaagtcgatc
     1441 acgtacagct ggagactttc ggtaatccgc cgggcgtttt caaggtggta cccggcggtt
     1501 tcattaccgt ttcggccatc ggcctgcgtg gctcgcaaaa cgtccaggtt accggtgacc
     1561 tcaactacac gtttgatgcc agcatcagcc ccggcggtca gctgttcgac aacacgatca
     1621 gcggtcagca gacggcttgt ggcgccttca cgggctctac gggtaccccg gtggtgcccg
     1681 cggcgaacct cgtcgtcagc gcaacttcgc cgaataccgt cgttctggtc gctccgacga
     1741 tcgcggctgc caacgccctg ttctcggtac cggccccggc tgctccggcc tcatattgca
     1801 tcctcctcaa cgctcatcac gtcatcgacg gcgtgacggg ctcaaccgtc atcgacgtta
     1861 gcaataacgc
//
LOCUS       DATGBK010000666         2289 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_216524, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000666 DATGBK010000000
VERSION     DATGBK010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216524"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            175..1713
                     /locus_tag="VKJ77_09445"
     CDS             175..1713
                     /locus_tag="VKJ77_09445"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HMC45534.1"
                     /translation="MATTYGGHIPLPRSAAGSFNPWLIAVIVSIATFMEVLDTTIANV
                     ALRHIAGGLGASLDQSTYITTSYLVSNAIVLPISGWLANVIGRKRFYMLCVLLFTVSS
                     VACGFATSLPMMIVFRVLQGLGGGGLAPVEQSIFADTFTPEKRAMAFALYGFTVVTAP
                     AIGPMLGGWITENYSWHWVFLINLPVGIVSLVLTWMFVSDSKLVQQERRALLDKGLRI
                     DYLGFFLVAAGFGSLQIVLDKFEREDGFSSNFICLFTAIAGVALVALVIRELTTAQPI
                     VNLRLFKSRAFAISCSVMFAFGFIINSTTQMLPQFTQELLGYDATNAGLTLGLGGLVT
                     LFIMPIAGIVTGRLFQPKWLVMMSLAGTGFALLHTAGLDLNIGFWDVSLSRLYQVIWL
                     PFLFIPLSTVQFIGIPPKENNNASALINMMRNLGGSFGVSLVTTQLAWREQFHHARLA
                     EHITPYNGFVSSLGSIASRVEQQASVMSYLDVFIMLGVISLVLAPICFFLPKLPKGAQ
                     VNAH"
     gene            1703..>2289
                     /locus_tag="VKJ77_09450"
     CDS             1703..>2289
                     /locus_tag="VKJ77_09450"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC45535.1"
                     /translation="MRIDYRWIPFVAFLSACTMGPDFQRPALQTPAQWPDAPATTDAV
                     RSVAVPEPVDPLWWNSFGDPLLTELVTRAMDSNLDLKIAATRLAESRAQFGQAKADEL
                     PTLNGNASYTRELQSADGVIGLLGGSGSPSATDTNGLGGRQGGVPTQSATSSALPPFN
                     LYQYGFDASWELDLWGRVRRTAENASATVDAQNEAR"
BASE COUNT          396 a          697 c          711 g          485 t
ORIGIN      
        1 gcagcgcggg acagggtccg tcttcagcag cctgcccgcg gaaaacgcaa cgggtaatta
       61 tgtgaaggtc gtgcagcgcc tgcccgtgaa aatcgtattc gatggcgacg actggcgcca
      121 cttgccgctc gcgcccggcc tctcggtcag cccgcgcgtg acggtgcggt aaccatggcc
      181 acgacctacg gaggccacat accattgccc aggtcggcgg cggggtcgtt caacccgtgg
      241 ctgatcgcgg tcatcgtgtc gatcgcgacc ttcatggaag tgctcgacac caccatcgcg
      301 aacgtggcgc tccggcatat tgccggcggc cttggtgcga gtctcgacca gagcacctac
      361 atcacgacga gctatctcgt gagcaacgcg atcgtcctgc cgatcagcgg atggctcgcg
      421 aacgtgatcg gccgcaagcg cttctacatg ctctgtgtat tgctgttcac ggtcagttcg
      481 gtagcctgcg ggttcgcgac gtcgctgccg atgatgatcg tctttcgcgt gctccagggc
      541 ttgggcggcg gcggtctggc gcccgttgag caaagcattt tcgccgatac gttcacgccc
      601 gaaaaacgcg cgatggcgtt cgcgctgtac ggcttcacgg tcgtcacggc gcccgccatt
      661 gggccgatgc tgggcggctg gatcaccgag aactattcgt ggcactgggt gttcctgatc
      721 aacctgcccg tcggcatagt gtcgctggtg ctgacgtgga tgttcgtgag cgacagcaag
      781 ctggtgcaac aggaacggcg cgccctgctc gataaagggt tgcggatcga ttacctgggc
      841 tttttcctcg ttgcggccgg tttcggtagc ctgcaaatcg tgctcgacaa gttcgagcgc
      901 gaggacgggt tttcatcgaa tttcatctgc ctgttcacgg caatcgcggg cgttgcgctc
      961 gtggcgctgg tcattcgtga actgaccacc gcgcagccga tcgtgaacct gcggcttttc
     1021 aagtcgcgcg cttttgccat cagttgcagc gtgatgtttg cgttcggctt catcatcaac
     1081 agcacgacgc agatgctgcc gcaattcacg caggaactgc tgggctacga cgccaccaac
     1141 gcgggcctga cgttgggttt gggcggcctc gtcacgctgt tcatcatgcc aatagccggc
     1201 attgtgaccg ggcgcctgtt ccagcccaaa tggctcgtca tgatgtcgct cgccggcacc
     1261 ggattcgcgt tgcttcatac cgcgggactc gacttgaaca tcggcttctg ggatgtatcg
     1321 ttgtcgcggc tctaccaggt catctggctg ccgttcctct tcattccgct ttcgaccgtg
     1381 cagtttatcg gtatcccgcc gaaagagaac aacaacgcgt cggcactgat caacatgatg
     1441 cgcaacctcg gtggcagttt cggcgtgtcg ctggtgacga cacagctcgc gtggcgggaa
     1501 cagtttcacc atgcaaggct cgctgagcac atcacgccgt acaacggctt tgtcagctcg
     1561 cttggatcga ttgcctcgag ggtcgagcag caggcgtcgg tcatgagtta cctcgacgtc
     1621 ttcatcatgc tgggcgtgat ctcgctcgtg ctggctccca tttgtttctt tttgccgaag
     1681 ctgccgaagg gggcacaggt caatgcgcat tgattatcga tggattccgt ttgtagcctt
     1741 cttgtccgcc tgcacgatgg gacccgactt ccagcgtccc gcattgcaga cgccggcgca
     1801 gtggcccgac gcccccgcga ctaccgatgc agttcgttcg gtcgcggtgc ctgagcccgt
     1861 tgatccgcta tggtggaaca gcttcgggga tccgcttctg accgagctgg tcacgcgcgc
     1921 catggacagc aatctcgatc tcaagatcgc agcgacgcgg cttgccgagt cgcgggcgca
     1981 gttcgggcaa gcgaaagcgg acgagctccc tacgttgaac ggcaacgcct cctatacgcg
     2041 tgagcttcag agcgccgatg gcgtcatcgg cctgctcggg ggcagcgggt caccgtcagc
     2101 caccgatacc aacgggctgg gcggacggca gggcggggtg ccgacgcaaa gcgcgacatc
     2161 gagcgcattg ccgccgttca acctgtatca atacggcttc gatgcatcgt gggaactcga
     2221 tctctggggc cgcgtgaggc gcacggcaga aaacgcaagc gctacagtcg atgctcaaaa
     2281 cgaagcgcg
//
LOCUS       DATGBK010000667         8187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_54677, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000667 DATGBK010000000
VERSION     DATGBK010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 8187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8187
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54677"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1240
                     /locus_tag="VKJ77_09455"
     CDS             <1..1240
                     /locus_tag="VKJ77_09455"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HMC45536.1"
                     /translation="NSFDGAERLIRWHVREVRRALGALPMRWSGVQYAPQLAKLGSWK
                     EAEITPKAVGAWRKLKVSDVRDEAPGVRSFYFQAADGSTLPAFEPGQFLPIRLHVPGL
                     AAPLVRTYTLSDAHQGSLYRITVKREGAASTWLHENVKAGMEIEAKAPGGAFVLDRTS
                     GRAVVLLSAGIGITPMVAMLNSLLTDTSGRAQPEHVHFIHGARRSEEHPFADELKAAE
                     QAHSHLSVHLRESHADVVDGTKSSGGRVDIAYLKSVLPFGDYDFYLCGPGAFMQDMYN
                     GLRSLNIADDRIRFEAFGPASVKRTESAVPALTVAEPVAPRDPEQSSKVVFMRTHRDA
                     QWLPEDGSLLDFAEANGVSVASNCRSGVCGTCATRVLSGEVAYPVPCEGEIPAGHALI
                     CSAIPARMGSGEESTVVLDL"
     gene            complement(1457..2338)
                     /locus_tag="VKJ77_09460"
     CDS             complement(1457..2338)
                     /locus_tag="VKJ77_09460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009240522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HMC45537.1"
                     /translation="MFVIFGASGKVGRVSAASLRNAGRAVRAVVRNEAQGERLARMGC
                     EIVLADLTNPASVARAIEGADAVQILCPVPIGDAHPGSTMHRMIEVAADALRANPPAH
                     VLALSDYGAELDHGTGITLLFHALEKQLQTAVQNLTLLRAAEHMQNWARVIPAALATG
                     KLPSLHHPLSKRFPTVAAQDVGLLAAELLLGESRGIVSIEGPRRLCALDVAHALSDAS
                     GREISAHEVPRNEWPAMLERAGLGADHAQLIIDLYDTHNAGRIDVEEGIGERRFGTTE
                     FTQVLASMLPDAAAVAN"
     gene            2549..3496
                     /locus_tag="VKJ77_09465"
     CDS             2549..3496
                     /locus_tag="VKJ77_09465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC45538.1"
                     /translation="MNAVTPLPMPLSGSRVNLRSSSGRGWNGFGVALLGISAGTHRIP
                     AMPHHRVGVHVGPPVMARCMCEQRRYARVQAHGDADVIPAGLEGQWTDESDCTILSIW
                     ISESFTRKTLEQLELKSGVAEFRPQLQMRDPRFQHLAWALQAELEAGEASDPLYAESL
                     CTAMVVRLIDSGGGIATLEGRGRTLAPRTATRVTDFIESNLDQRLTLDELAALAQLSV
                     PHFKVLFRETLGVPVHRYVVQRRVERAKALLLQGKLSTSQVALETGFSHQSHMAHWMN
                     RLLGLTPREIVKDSGQTVQLAGPTLASTANTTHKKLLPR"
     gene            3501..4742
                     /locus_tag="VKJ77_09470"
     CDS             3501..4742
                     /locus_tag="VKJ77_09470"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45539.1"
                     /translation="MTDISGTPLIPASERSTDYGLWALTFSYVLSQFFRSYVAVISTQ
                     LIGDFHFTPQLFGWFSGAFFLVFAAAQIPVGFMFDRYGVRYPTAVLMSVGTLSAGIVS
                     ITTDPRLAIIAQAGIGIGCAPVFMGLLNYVLRHGAGPRDVRSITTASAIGMSGGLLAA
                     FPLSWGTANFGWRPVMALSAMLMLLATLGVIFFVRRRDEEPLLKAPQSQSSPGRAMAP
                     ARTSGLWTLMPVCLAMSVGGTFRTSWGGPYLADVFGFDVMARGNAMTVMSIAGIGASF
                     CIPFLVRRWSPKSLSLCWQAGGVLAALLLAAMPQRSPVISVAAICLLLSVGCIHPLVM
                     SQARAIIAPGKLGLGLGLLNSLVFLGVALASSIFGLIAEQARMTGVSSAALYSRLFVV
                     TAVPLAVGALAYWFSPGGARK"
     gene            complement(4815..6020)
                     /locus_tag="VKJ77_09475"
     CDS             complement(4815..6020)
                     /locus_tag="VKJ77_09475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003064323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45540.1"
                     /translation="MAFDIDLRFTRDRTRYALPLYAFIASMFFAASSAPTPLYRLYQE
                     AWGFSSATLTLVFSVYAFSLLVALLTTGSLSDHIGRRPAIIGGVVLEVVAMLIFADAH
                     SVQMLILARVVQGFATGTATSALGAAILDASRTRGSLVNTLSPLLGMGVGALGTSLLV
                     DYAPAPMQSVYFLLIAVFVLQAVGVWMLPETVSRSPGTLASLVPRVRVPRAARVAMLR
                     IAPVNVAVWALGGFYLSLGPTLARAVTGGNDVMTGGWVVFALTGGGLVAVLLLRAMST
                     HRLLMTGGVVLAAGLLVTLTGVHAGNAGIFFVGTVLAGMGFGSAFQGALRSVLPLAEA
                     HERAGLMAAFYVLSYLAFSVPAIIAGTMAHVVGLRLTTDVYGVTMAALAGMTVIASGW
                     GRARRMVGG"
     gene            6207..6713
                     /locus_tag="VKJ77_09480"
     CDS             6207..6713
                     /locus_tag="VKJ77_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003057877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal ligand-binding domain-containing protein"
                     /protein_id="HMC45541.1"
                     /translation="MHHAVKTLLDEIPREELTVPQVAARAGVTPSTIYRRWGDLPTLL
                     ADVALQRFHPDNGPADMGSLRSDLETWAQGYQEEMSSAPGRAMTRDVLASNDTRSPAC
                     QCAAITRSQIQMILDRAVERGETPPDINLVMDNVVAPLIYRLLFDDAPIDPAFARTRM
                     AMLLTPGR"
     gene            complement(6757..7005)
                     /locus_tag="VKJ77_09485"
     CDS             complement(6757..7005)
                     /locus_tag="VKJ77_09485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018418697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45542.1"
                     /translation="MNVAEKSLRYLVEKWLAPTPAVQIHVLQFGRMGFAKRRYVRVEA
                     SAPTGSRAIFFFRHDDGSWCVFPPATSRPAMMSYRLAA"
     gene            7335..8075
                     /locus_tag="VKJ77_09490"
     CDS             7335..8075
                     /locus_tag="VKJ77_09490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45543.1"
                     /translation="MQPISRHLQLASGVVLLIYLFLHLVNHALGIWSLDLAGRGLMLA
                     IKLWHSTPGTILLYGSAALHFSLALRTLYGRRHWVLPATEWIRLWAGLSLPLLLIRHA
                     VGTRLAASLYGFEPDYEKIVISLISSGTQGLQLALLAPGWVHGCLGLWLRFRHHDFMR
                     RAKPVLIALLIGLPLLSAAGFMHMTRTVEAASAQLPAPDPKLVTHRVALDDWRRDLLM
                     LYASLVIGAVGAGLLRNRLQSTQAPKSG"
BASE COUNT         1546 a         2529 c         2484 g         1628 t
ORIGIN      
        1 taattctttc gatggcgccg agcgcttgat ccgctggcat gtgcgtgagg tgcgtcgcgc
       61 tctgggtgcg ttgcccatgc gttggtcggg tgtgcaatac gcgccgcaac ttgcgaagct
      121 tggtagctgg aaagaggcgg agattacgcc gaaagccgtg ggcgcgtggc gcaaattaaa
      181 ggtctccgac gttcgcgacg aggcccctgg tgtgcggtcg ttctattttc aagccgccga
      241 tgggtcgacg cttcctgcat tcgaacccgg ccagttcctg ccgatccggt tgcacgttcc
      301 agggctcgcc gcaccgttgg tcagaaccta taccctctcc gatgcccacc aaggctcgct
      361 ctatcggatc acggtaaagc gcgagggtgc ggcatcgacg tggctgcatg agaacgtcaa
      421 agcaggaatg gagattgagg ccaaggcgcc cggcggggct ttcgtacttg atcgtacgag
      481 tggtcgcgcg gtggtcttgc tatctgccgg cattggcatt acgccaatgg tcgcgatgct
      541 gaacagcttg ctcaccgaca cgagtgggcg cgcacagccc gagcacgtcc attttatcca
      601 cggtgctcgc cggtctgaag agcatccgtt tgctgacgaa ctcaaggctg ctgagcaagc
      661 acactcgcat ctttcggtgc atttgcgcga gagccacgct gatgtggtcg acggaacgaa
      721 gtcatccggc ggacgagttg atattgcgta tctcaagagc gtgttgccgt ttggtgatta
      781 cgacttttac ctgtgcggtc ctggcgcgtt catgcaggac atgtacaacg gcttgcgttc
      841 actcaacatt gccgacgacc ggattcgctt cgaggcgttc ggacccgcga gtgtcaagcg
      901 gacggaaagc gcagtgccgg cactgacggt ggcggagcct gttgctcccc gcgaccccga
      961 gcagtcatcc aaggtagtct tcatgcgtac gcatcgcgac gcgcagtggt tgccggaaga
     1021 cggaagtctg ctggattttg cagaggcgaa cggggtctcg gttgcatcga attgccggtc
     1081 cggagtgtgc ggcacgtgtg cgacgcgcgt gttgtcggga gaagtggcat accccgtacc
     1141 atgcgagggc gagatcccgg cgggacatgc gttgatatgc agcgccatac ccgcgaggat
     1201 gggttcgggc gaggaatcga ccgtcgtact ggatctgtga agtcagcgta ccggcctcag
     1261 atattcaaaa gaaaataaag tcgtcgttgc tgtcgggtag agcgcttaac atgcgctgga
     1321 accgatagcc gccgaccacc ccggcaagcc cgatgatgat cgcaagccac gcacgcttgg
     1381 tgcggcgtgc acggattgca gataccgatg gcgaacgcgc gaagtgcgtc gctttcttcc
     1441 gtgtcgggcg gcgcatctag ttagccaccg ctgctgcatc tggcagcatc gaagccagga
     1501 cctgagtgaa ttcggtcgta ccgaaacgcc gctcgcctat tccttcttcc acgtcgatac
     1561 ggcccgcgtt atgcgtatcg tagagatcga taatgagctg tgcatggtcc gcgccaaggc
     1621 cggcgcgctc cagcatggcc ggccattcgt tgcgtggcac ttcatgtgcg ctgatttcac
     1681 gcccgcttgc atcgctcagt gcgtgggcga catcaagcgc acagagtcgc cgcgggcctt
     1741 caatgctgac tatccctcgt gactccccaa gcagaagttc tgccgctagc agccccacgt
     1801 cctgtgccgc caccgttgga aagcgcttgc ttaacggatg atgcaggctt ggcaacttgc
     1861 ccgttgccag cgcggcgggt atcacgcgtg cccagttctg catatgttcg gctgcgcgca
     1921 acaatgtcag gttttgaacc gctgtttgca actgcttttc aagggcgtga aatagcaatg
     1981 tgatgcccgt gccgtggtcc agttccgcgc catagtcgga cagcgcgagt acatgtgcgg
     2041 gtggattagc gcgcaatgca tcggctgcaa cttcaatcat gcgatgcatc gtgctgccgg
     2101 gatgtgcgtc accgatggga accggacaca ggatctgtac agcgtccgca ccctctattg
     2161 cccttgcgac cgatgccggg ttcgtcagat ccgcaagcac gatctcgcag cccatccgcg
     2221 caaggcgctc gccctgggct tcgtttcgta ccacggccct gaccgcgcga cccgcattgc
     2281 gaagcgatgc agcgctcacg cgcccgactt tgcctgatgc tccaaatatc acgaacacat
     2341 tcgacccctt gtggactgga tgtcgtcatc gtagggaggt tgaacgttcc aggcgcgcag
     2401 ggaaggatcg acatgcgcag atacggatga ttgttttgtg gcactgccgc aagacggccg
     2461 ggctcagggt gtcgcgcgta acgacatcga gcaaatcggc gcaaaaccca gcacaatgct
     2521 cgcttgccga cttctgccgg gacctgccat gaatgccgtg acaccattgc ccatgccgct
     2581 ttcgggctcc cgcgtcaatt tgcgctccag cagcggtcga ggctggaacg gcttcggtgt
     2641 ggcgctgctt ggcatttcgg cgggcacgca ccggattccg gccatgccgc atcaccgcgt
     2701 tggcgtgcat gtcgggccac cggtcatggc gcgctgcatg tgcgaacaac gtcgctatgc
     2761 gcgcgttcag gcgcatggtg acgccgacgt gatccccgcg ggactcgaag gccaatggac
     2821 cgacgaatcg gactgcacga tcctcagcat ctggatcagc gagtcattca cgcgcaagac
     2881 gctcgagcag cttgaactga aatcaggcgt tgccgaattt cgtccgcaac tccagatgcg
     2941 cgatccgcgt tttcagcatc tggcgtgggc gctgcaggcg gaactggaag ccggcgaggc
     3001 gtccgatccg ctctatgcag agagtctttg cacagcaatg gtggtcaggc tgatcgacag
     3061 cggcggcggc atcgccacgc tcgaaggccg cgggcgtacg ctagcgccgc gaacggctac
     3121 aagagtgact gacttcatcg aaagcaatct ggatcagcgc ctgacgcttg acgaactcgc
     3181 cgcgttggcc cagcttagcg tgccgcattt caaggtgctg tttcgcgaga cgctcggcgt
     3241 gccggtgcat cgatacgtcg tgcagcgacg cgtcgaacgc gcgaaggcgt tgctgttgca
     3301 aggcaagctc agtaccagcc aggtggcgct cgaaacgggc ttttcccatc aaagccacat
     3361 ggcgcactgg atgaaccggc tgctcggact gacgccgcgc gagatcgtga aagacagtgg
     3421 gcaaacggtc cagctcgctg gtccaacgct ggcgagtaca gcgaatacaa cgcataagaa
     3481 actgcttcca cgttgagtcg atgaccgata tttcaggcac tcctcttatc cccgcatccg
     3541 agcgttcaac cgattacggt ctgtgggcgc tgacattcag ctacgtacta agccagtttt
     3601 tccgcagcta tgtggcggtg atttcgacac agctcatcgg ggattttcat ttcactccgc
     3661 agctgttcgg ctggttctcc ggcgcgtttt ttctcgtctt tgccgcagca caaataccgg
     3721 ttggattcat gttcgaccgg tacggggtgc gttatcccac ggcagtcctg atgagcgtag
     3781 gcacgctgag tgccgggatt gtgtcgatca cgaccgaccc gcgtctcgcc atcatcgcgc
     3841 aggccggaat cggaatcggt tgcgcgccgg tcttcatggg actgctcaac tacgtcctgc
     3901 gtcatggcgc ggggccgcgc gatgtgcgct cgatcaccac cgccagcgct atcggcatgt
     3961 ccggaggact gctcgcggcg ttcccactaa gctggggaac agcaaatttt ggctggcgtc
     4021 cggtcatggc gttgtcggcc atgctgatgc tgctcgcgac gctcggcgtt attttcttcg
     4081 tgcgccggcg agacgaggaa cctttgctca aggccccgca atcgcaatca tcgcctggac
     4141 gcgcgatggc ccctgcccgc acgagcggct tgtggacatt gatgccggtt tgcctggcga
     4201 tgtcggtggg cggaacgttt cgcacgtcct ggggcggtcc ttatctggcc gacgtatttg
     4261 gcttcgacgt gatggcgcgc ggcaatgcga tgaccgtcat gagtatcgcg ggcataggcg
     4321 catctttctg cattccattt ctggtaaggc gatggtctcc caagtcgttg tctctctgct
     4381 ggcaggccgg cggcgttctg gcggcactct tgctcgcggc tatgccgcaa cgaagccctg
     4441 tcatcagcgt tgccgctatc tgcctattgt tgtcggtcgg ctgcattcat ccgctggtca
     4501 tgtcacaggc gcgggcgatc attgcgccgg gcaagttggg gctcggatta ggcctgctca
     4561 acagcctcgt atttttgggc gtggcgctgg caagcagcat ctttggcttg atcgcagagc
     4621 aagcgcgcat gacgggcgtg tcgagtgcgg ccctctactc ccggttgttt gttgtgacgg
     4681 cggtgccgct cgccgttggc gcgcttgctt attggttcag ccccggaggc gcgcgcaagt
     4741 gatgcgtccg ggcgccggtt ttgtttcttc ggcacccgga ttttgcagcg aacgttctgc
     4801 cagcaagcgc atcctcaccc gccaaccatc cgccgtgccc ttccccaccc gctggcaata
     4861 acggtcatcc ccgccagcgc cgccatcgta acgccgtaca catcggtggt cagacgcaac
     4921 ccaacgacgt gggccatcgt ccctgcaata atcgccggca cgctgaacgc gagatagctc
     4981 agcacgtaga acgctgccat cagccccgcg cgttcgtgcg cttcagctag cggcaagacc
     5041 gagcgcaatg cgccttgaaa cgccgagcca aagcccatgc ccgcgaggac agtgccgaca
     5101 aagaagatcc ccgcgttgcc cgcgtgcacc cccgtcagcg tcaccagcaa tccggctgca
     5161 aggacaaccc cacccgtcat cagcaaccgg tgcgtgctca tcgcgcgcaa cagcagcacg
     5221 gcgaccaggc ctccacccgt taatgcaaac acgacccaac cgccggtcat gacgtcgttg
     5281 ccgcccgtca ccgcgcgtgc aagcgtcggc cccaacgaca gatagaagcc acccagcgcc
     5341 cataccgcga cattgactgg cgcgatgcgc aacattgcca cccgcgccgc ccggggcaca
     5401 cgcacgcgcg gcaccagtga agccagcgtc cccgggcttc ggctcaccgt ctccggcaac
     5461 atccacacgc ccaccgcctg aagcacgaac accgcgatca gcaggaagta gacactctgc
     5521 atgggcgcgg gtgcgtagtc gaccagcaag cttgtgccaa gcgcgcccac tcccatgcca
     5581 agcaaaggcg aaagcgtatt gaccagcgaa ccgcgcgtac ggcttgcatc gagaatcgct
     5641 gcgcccagcg cgctcgtggc cgtaccggtt gcaaagccct gaacgacacg cgccaggatc
     5701 agcatctgga cgctgtgggc atcggcgaaa atcagcatcg ccacgacctc gagcactacg
     5761 ccaccgataa tcgccggccg ccggccaatg tgatcggaga gtgacccggt cgtcagcagc
     5821 gcgaccaaca ggctgaatgc gtagacgctg aacaccagcg tcagcgtcgc cgacgagaac
     5881 ccccatgcct cctgatacag ccggtaaagc ggcgtcggcg cactcgacgc ggcaaagaac
     5941 atagaggcga tgaacgcgta aagcggcagc gcgtaacgtg tcctgtcacg agtaaaacga
     6001 aggtcgatat cgaaggccat tgcacacccc gggaaataaa cgcaaaataa ttgctttagc
     6061 ggattgtgcg cgccgccttt cgttaatgca actttttagc tttaacgagt ttcatcgata
     6121 cgagcgaaca aggtggagag ggacaggcaa tggcagcaag agagggattg cgacccggtg
     6181 ggcgtagcgc gcgggtgcag gagtccgtgc accacgcagt caagacgttg ctggacgaaa
     6241 taccgcgcga ggaactgacg gtgccgcagg tcgcggcgcg cgccggggtg acgccgtcca
     6301 cgatctaccg ccgctggggc gacctgccga cccttctcgc cgatgtcgcc ctgcagcgtt
     6361 ttcatccgga taacggcccg gccgacatgg gctcgctgcg cagcgatctg gaaacgtggg
     6421 cgcagggcta tcaggaggag atgtcgtcgg cgcccggccg cgccatgacg cgcgacgtgc
     6481 tggcaagcaa cgatacccgc agccccgcct gtcagtgcgc ggccatcacg cgctcgcaga
     6541 tccagatgat cctggaccgg gcggtcgaac gaggcgaaac accgcccgat atcaatctcg
     6601 tgatggataa cgtggtcgcg ccgctcatct atcgcctgct cttcgacgat gccccgatcg
     6661 acccggcatt cgcccgcacc cgcatggcaa tgctgctgac cccgggccgg taagcgccgt
     6721 gaggagcgta cctccgcgtt tcaggctttg ggttccctat gcggcaaggc gatagctcat
     6781 catggccggc cgtgaggtag cgggtggaaa cacacaccaa ctaccgtcgt cgtggcgaaa
     6841 gaagaaaatg gcgcgcgaac cggttggcgc cgaagcttcg acacgcacat agcgtctttt
     6901 ggcgaaaccc atgcggccga attgaaggac gtggatctgc acggccggag tgggcgcaag
     6961 ccatttttcg acgaggtaac gcaaggactt ttcggcgaca ttcatctcgg cctcctttca
     7021 ccgagcttcc ggcaccaggc atttcacgaa aaatattcgg ttcatttaat taggcatgcc
     7081 gaacataact catgattttc atacatggga tcgtcgtgcc ggagagcgca gggcaggctc
     7141 aaagtcccgc gtaaaatcag tcagacgcgc acttatatga ctacggacga gcacgattta
     7201 ttcccgaagg cgtccacggg gaataaatcc gccaggcctc cggtcttgtt gtcaggtctc
     7261 gtggacgcgg ttgcgcacgg aataacgatt gggtacaacg tacccgtcca cgttcgacgt
     7321 caagaggaat ggagatgcaa ccgatttcgc gtcatctgca gcttgcgtca ggcgtggtgc
     7381 tgctgatcta tttgttcctc catctggtca atcatgcgct cggcatctgg tcgctggatc
     7441 tggcgggacg cggtctaatg ctcgctataa agctctggca cagcacgccc ggtacgatcc
     7501 tgctctacgg ttcggccgct ctccattttt cgcttgcctt gcgcacgctc tacgggcgtc
     7561 gccactgggt gctgcccgcc accgaatgga ttcgtctctg ggcagggctc agcctgcctc
     7621 tgctgctgat ccgccatgca gtgggaactc gcctcgccgc ctcgctctac ggtttcgaac
     7681 cggactacga aaaaatagtg atttccctga tttcgagtgg cacacagggt ttgcaacttg
     7741 cgctgctcgc gccgggctgg gtgcatggct gcctcggact ctggctacgt tttcgccacc
     7801 acgatttcat gcgtcgcgcg aagcccgtgt tgatcgcgtt gctcattggt ttgccgctgc
     7861 tgtcggcggc cggcttcatg cacatgacgc ggaccgtgga ggcggccagc gcccagcttc
     7921 ccgcccctga tccgaaactc gtcacgcatc gggtcgcgct ggatgactgg cgtcgcgatc
     7981 tcctgatgct ctacgcgtcc ctggtgatcg gcgctgtggg cgctgggctg ctgcgcaatc
     8041 gactccaatc gactcaagcg ccgaagtctg gctaaaccat cactcgatgc gtgagtcggt
     8101 cgccagcaat cgcgtacgct tgccacgatt cggctcctac attccacgtt gcgcagctga
     8161 tacggccccc tggcgccacg caaaatt
//
LOCUS       DATGBK010000668         2571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286111, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000668 DATGBK010000000
VERSION     DATGBK010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286111"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1262)
                     /gene="hisD"
                     /locus_tag="VKJ77_09495"
     CDS             complement(<1..1262)
                     /gene="hisD"
                     /locus_tag="VKJ77_09495"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HMC45544.1"
                     /translation="MSIKIRKLDSSANGFHTALHAVLAFEASEDEAIERSVAQILTDV
                     KTRGDDAVLDYTNKFDRLKAESVASLELPQAELEAALEGLVPKRRAALEAAAARVRGY
                     HEKQRIECGSHSWQYTEADGTVLGQKVTPLDRAGIYVPGGKAAYPSSVLMNSIPARVA
                     GVREIVMVVPTPDGVKNPLVLAAALLGGVDRVFTIGGAQAIGALAYGTQSIPAVDKIC
                     GPGNAYVASAKRRVFGTVGIDMIAGPSEILIICDATTDPRWVAMDLFSQAEHDELAQS
                     ILLCPDATFIQRVEDAINELLPTLPRRDVIQRSLEDRGALIKVADMNEACAIANDIAP
                     EHLEISALDPHHWAAQIRHAGAIFLGRYTSESLGDYCAGPNHVLPTSRTARFSSPLGV
                     YDFLKRSSVIEVSAEGAQTLGEIAAELA"
     gene            complement(1304..1996)
                     /gene="hisG"
                     /locus_tag="VKJ77_09500"
     CDS             complement(1304..1996)
                     /gene="hisG"
                     /locus_tag="VKJ77_09500"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HMC45545.1"
                     /translation="MSSLQTSQSLSSVPASAMLTLALSKGRIFDETLPLLAAAGVEVT
                     EDPETSRKLILPTTNPNLRVIIVRATDVPTYVEYGAADFGVAGKDVLIEHGGGGLYQP
                     IDLNIARCRMSVAVKNGFDYETAVRQGARLRVATKYVEVAREHFAAKGVHVDLIKLYG
                     SMELAPLVGLADAIVDLVSSGNTLRANDLVEVEEIMEISSRLVVNQAALKLKRAALKP
                     YLDAFERASVGA"
     gene            complement(1993..>2571)
                     /locus_tag="VKJ77_09505"
     CDS             complement(1993..>2571)
                     /locus_tag="VKJ77_09505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HMC45546.1"
                     /translation="DRIEAGTFLCAVAATGGDVTLRNVNPSLLEAVIEKLHEAGVSIE
                     EGENWLRVRMNQRPTAVSFRTSEYPAFPTDMQAQFMALNTLASGTSQAVETIFENRFM
                     HVQELNRLGASITVDGNTALVAGVQKLSGAKVMATDLRASASLVIAAMCAEGETLIDR
                     IYHLDRGYDRMESKLTAVGANVRRIKGSGGEQ"
BASE COUNT          472 a          855 c          730 g          514 t
ORIGIN      
        1 tacgccagtt cggctgcaat ctcgccgagc gtctgcgcgc cttcggcgct gacttcaatc
       61 acgctcgagc gcttcaggaa gtcgtacaca cccagcggcg atgagaaccg cgcagtgcgg
      121 gaagtcggca gcacgtggtt cggtcccgcg cagtaatcgc cgaggctttc gctcgtgtag
      181 cggccaagga aaatggcgcc cgcgtgacgg atctgcgccg cccagtgatg cggatcgagc
      241 gcggaaattt cgaggtgttc cggcgcgatg tcgttggcga tcgcgcaggc ttcgttcata
      301 tctgcgacct tgatcagcgc accgcggtct tcgagcgagc gctggatcac atcgcgacgg
      361 ggcaacgtgg gcagcaattc gttgatcgcg tcttccacgc gctggataaa cgtcgcgtcc
      421 gggcacagca agatggattg cgcgagttcg tcgtgctcgg cttgcgagaa caggtccatc
      481 gcgacccagc gcgggtccgt ggtcgcgtcg cagataatca ggatttccga cggtcccgcg
      541 atcatgtcga taccgaccgt gccgaacacg cgccgtttcg ccgatgccac gtacgcgttg
      601 cccgggccgc agattttatc gacggcagga atggattgcg tgccgtaggc cagcgcgcca
      661 atcgcctgcg cgccgccgat ggtgaacacg cgatccacgc cgcccagcaa cgccgccgcg
      721 agcaccagcg gattcttcac gccgtccggc gtgggcacga ccatgacgat ttcgcgcacc
      781 ccggccaccc gcgccggaat ggaattcatc agcaccgacg acggatacgc cgccttgccg
      841 cccggcacat agataccagc gcgatccagc ggcgtgactt tctggccgag caccgtgccg
      901 tcggcttccg tgtattgcca gctatggcta ccgcactcaa tccgctgttt ctcgtgataa
      961 ccgcgcacgc gcgccgccgc cgcttccagc gcagcgcgac gtttcggtac gaggccttcc
     1021 agcgcagctt ccaattcggc ctgcggcaat tccagcgacg caacgctctc ggctttcagc
     1081 cggtcgaact tgttcgtgta gtccaggacg gcgtcgtcgc cacgcgtttt gacatcggtg
     1141 agaatttgcg cgaccgagcg ctcaatggct tcgtcctcgc tcgcctcgaa cgcgagcacc
     1201 gcgtgcagcg ccgtgtgaaa cccattggcg ctggaatcga gtttgcgaat cttgatagac
     1261 atgctggtat ccgtttgttt gccctgctct gccctactct cttttacgcg ccaaccgacg
     1321 cgcgttcgaa cgcatcgaga tacggcttca acgcagcgcg cttcaacttc agcgcggcct
     1381 gattgacgac cagacgcgac gatatttcca tgatttcttc aacttcgacc aaatcattcg
     1441 cacgcaatgt attacctgag ctgaccaggt cgacgatggc gtcggccagg ccgaccagcg
     1501 gcgccagttc catcgatcca tacagcttga tcagatcgac gtgcacgccc ttcgccgcga
     1561 aatgctcacg tgccacttca acatattttg tcgcgacgcg cagccgcgca ccttggcgca
     1621 cagccgtttc gtaatcgaag ccattcttca ccgccaccga catccggcag cgcgcaatgt
     1681 tcagatcgat cggttgatac aaaccgccgc cgccatgctc gatcaacacg tccttgcccg
     1741 ccacgccgaa gtcggccgcg ccgtattcga cgtaggtcgg gacatcggtt gcgcgcacga
     1801 tgatcacgcg caaattcggg ttcgtggtcg gcaagatcag cttgcgcgac gtttcgggat
     1861 cctccgtcac ttccaccccg gctgcggcga gcagcggcag ggtttcatcg aagatgcgtc
     1921 ccttcgatag cgccagcgtc aacatcgcgc tagccggcac cgaactcaac gactgggaag
     1981 tttgcagcga actcattgct cgcctccgct acccttgatg cgccgcacgt tcgcgccaac
     2041 tgccgtcagc ttgctttcca tccggtcgta gccgcgatca aggtgataga tacgatcgat
     2101 cagcgtttcg ccttccgcgc acatggccgc gatcaccaga ctcgccgatg cccgcagatc
     2161 ggtcgccatc accttcgcgc ccgacagttt ctgcacgccg gcgaccagcg ccgtattacc
     2221 gtcgacggta atgcttgcgc ccaaccggtt caattcctgc acgtgcatga aacgattttc
     2281 gaagatggtt tccaccgctt gcgacgtgcc gctcgcgagc gtgttgagcg ccatgaactg
     2341 agcttgcatg tcggtgggga acgccggata ttccgatgta cggaagctga ccgccgtcgg
     2401 acgttggttc atccgtacgc gaagccagtt ctcgccttct tcaatagata cacccgcttc
     2461 gtgcagcttt tcaatcacgg cttcgagcaa cgaaggattc acgttgcgca acgtcacgtc
     2521 gccgcccgta gccgcgaccg cgcacaggaa cgtgcccgct tcaatgcgat c
//
LOCUS       DATGBK010000669         1761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_193771, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000669 DATGBK010000000
VERSION     DATGBK010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193771"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..503)
                     /locus_tag="VKJ77_09510"
     CDS             complement(189..503)
                     /locus_tag="VKJ77_09510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45547.1"
                     /translation="MNIKPIVLAAALVATCATQAYAQETTVDSSANARPATTTTVVAA
                     SAPASATSKQNVGLVIAKAAAKDPATTFSPDYSHALTPGQMAAAWQAELDRLMPQPPS
                     TP"
     gene            complement(611..>1761)
                     /locus_tag="VKJ77_09515"
     CDS             complement(611..>1761)
                     /locus_tag="VKJ77_09515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45548.1"
                     /translation="AATTGFGLVSDTVFGLDGQVAIHVRGMSKDAFPVLYGEAAFSKF
                     SPDYRNVASVTDSAAVIGARLTFGQTKATVQYQVVGANYLDGAPYAYFGNAPAIFTNW
                     KRAYLPSFFGVSNNFAINGIFDSQLNAAGIASVTQKNPNLTFASIAVNPFAPYSPTYF
                     QAFAPNSVGPTLTLLFPLHIGDLNVRGRIVAQHLTEIGASQDTAFHTSERETIDKVDG
                     SAAFSVPVAGKVAAVTLGSIYEHLRRNDGTLTAYVPLDPGTGLPDANSAALVARAFGG
                     SPVLFAPNYVNIRHYTVSAGATLPVTDNISLGTTYNSQHFGGAYQSTLGDTMSQRKDT
                     IFGNITYSIPKTTSTVALIARQYKYTDDVVPSFNLTQNRQDILFTVRF"
BASE COUNT          349 a          473 c          558 g          381 t
ORIGIN      
        1 ctatcatccg ctaatgatag cgcgttcgag ccacttcatc aatcgcgttt tgaaaagcga
       61 aacggctcgg ctggaggaca ccagaccgaa ccgtttagcg cctttactcg cgagagtgtt
      121 ggcatgcgct ccgacgagtc aagcttgtta caatctgtac gcgtgacaga tcgttttgga
      181 tcagcgggtt acggcgtgct cgggggctgc ggcatgaggc gatcgagttc ggcttgccac
      241 gcggccgcca tttgacccgg cgttaaggca tgtgagtaat ccggtgagaa tgtcgtggcg
      301 gggtctttcg cggcggcttt cgcgatgacg aggccgacgt tttgtttcga ggtagcggac
      361 gccggcgccg aggccgcgac aaccgtggtc gtcgtcgcag gacgggcgtt ggcagacgaa
      421 tcaacggtgg tctcttgggc gtacgcttgc gtggcgcacg tcgccacaag ggcggcagca
      481 aggacgattg gtttgatgtt catgtttttt ttgttcctat ttgtgtcgcg gacgccagcc
      541 gggaggtact ggtctgcgac cggagtgtgg tcccgatacc tatgtacgcg cgaactgctt
      601 tcccggatga ctaaaaacga acggtgaaca gaatatcttg ccggttctgc gtcaaattga
      661 acgacggaac aacgtcatca gtgtacttat actgacgcgc aatgagcgca acggtggatg
      721 tcgtcttggg aatcgagtag gtgatgtttc cgaagatcgt atctttgcgt tgagacatgg
      781 tgtcgcccaa cgtcgactga tacgcgccgc cgaagtgctg cgaattgtag gtcgtcccaa
      841 gcgatatgtt gtccgtcacc gggagcgtcg cacccgcact caccgtgtag tggcgaatgt
      901 tgacatagtt gggcgcgaac aggaccggtg agccgccgaa tgcccgcgcg acgagcgcgg
      961 cggaattggc gtcgggcaat cccgttccgg gatcgagcgg cacatatgct gtgagggtgc
     1021 cgtcgttccg tctcaggtgc tcgtaaatac ttcccagcgt tacggcagcc actttaccgg
     1081 caacgggaac ggagaacgcc gccgacccat cgaccttatc gatcgtctcg cgttcggatg
     1141 tatggaatgc cgtatcctga gacgctccga tttcggtgag atgctgcgca acgatccgcc
     1201 cgcgaacatt caggtcgccg atgtgcaacg gaaacagcaa cgtgagcgtc gggcctaccg
     1261 agttgggtgc gaatgcttga aaatacgtcg ggctgtacgg cgcgaacggg ttcaccgcga
     1321 tggaagcaaa cgtgaggttt gggtttttct gcgtgacgga ggcgatgccg gccgcattga
     1381 gttgtgaatc aaatattcca ttgatcgcga agttgttgct gaccccgaag aagctcggca
     1441 gatacgcacg cttccaattg gtgaagatcg ccggcgcgtt gccgaagtac gcgtacggcg
     1501 ccccatcgag gtagtttgcg ccgacgactt ggtattgaac ggtcgctttg gtctggccga
     1561 acgtcaaccg tgctccgatc accgcagcgc tatcggtgac cgatgcgaca tttcggtaat
     1621 ccggcgagaa cttactgaac gcggcttctc cgtagagcac ggggaacgcg tccttcgaca
     1681 tcccgcgcac gtgaatcgcc acctggccgt cgaggccgaa gaccgtatcg ctaaccaatc
     1741 cgaagcccgt ggtcgcggcg g
//
LOCUS       DATGBK010000670         3159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_239699, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000670 DATGBK010000000
VERSION     DATGBK010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3159
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239699"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..781
                     /locus_tag="VKJ77_09520"
     CDS             <1..781
                     /locus_tag="VKJ77_09520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC45549.1"
                     /translation="SSSLVLAKSSFERWQQLRQRDAVSQQELDERQSTYSQDVANLAA
                     ANANVQRVKQLESFKRIVAPFAGVVTQRNVDVGDLIDAGSGASRALFALAQSDPLRVY
                     VQLPQAYAQNVTQGQDVIVTQAELPGQQFHGSIAHISGAIDVPTRSLQIEVRLPNPDS
                     KLRPGAYVQVSLPATVRAPLLVPGNALLFRSEGPRVAVVDQDGKVNLRKIVIAQDLGQ
                     SLEIESGIEATDKIIINPSDSIADGDHVLIAPQQPAKKGTS"
     gene            850..2310
                     /locus_tag="VKJ77_09525"
     CDS             850..2310
                     /locus_tag="VKJ77_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC45550.1"
                     /translation="MTSTTVVASGAVLLSACTVGPDYKQPHADAPPAWHTDSYWRLAE
                     PSHAPLAPEWWASFGDESLNGFEQQALAENQTLAAASAHYAQARATLANNKAQQVPEV
                     DLGANGSRFRISKDRPLTNYATPTQSTVQNNIQLGPTINYDTDLFGRIRREVEGATAS
                     AEQSRDDLANARLVLTTDLASDYFSMRELDAEIDVLNRSVVLQQKALDYVTTEHDLGS
                     VSGLDVLQQKSELDSTRVQARLLLNQRAQFEHAIAALIGVPAPQFAIAPKVIDNTVPA
                     IPLGLPSDLLQRRPDIASAERAMAAANAQIGVAKAAFFPSLSLMPGIGWESTQFASLL
                     SAPTLMWTLGATLSQVVFDGGRRAANVDFASAGYQAAEATYRQTVLNAFQQVQDGVTG
                     LSVLDAASKESQEAVTDAQRLLSLANDRYSGGLVAFLDVITAQQSLLTSERQDVQIHG
                     QQWTMSVSLVKALGGGWDVNAAAPEKTAAATTNPPN"
     gene            2441..3127
                     /locus_tag="VKJ77_09530"
     CDS             2441..3127
                     /locus_tag="VKJ77_09530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal response regulator transcription
                     factor"
                     /protein_id="HMC45551.1"
                     /translation="MKLLIVEDEHKVVDYLRSGLTEQGWIVDVALDGEEGTHLAIEFD
                     YDVIVLDVMLPKRDGFSVLKALRAHKATPVIMLTARDQINDRVRGLREGADDYLTKPF
                     SFLELVERLHALARRTRVQESTLISLGDLYVDLIGRRATRDGVRLDLTAKEFQLLSVL
                     ARRQGDILSKTAITELVWDVNFDSHTNVVETAIKRLRAKLDGPFPTKLLHTVRGMGYV
                     LEVREEAGTS"
BASE COUNT          610 a          955 c         1036 g          558 t
ORIGIN      
        1 gtcgtcaagt ctcgtgctcg cgaagagctc gttcgagcgc tggcagcaac tgcgccaacg
       61 cgatgcggtt tctcaacagg aactcgatga acgccagagc acctacagcc aggacgtcgc
      121 gaatcttgca gcagcgaacg ccaacgtaca gcgcgtgaag cagcttgaat cgttcaagcg
      181 gatcgtcgct ccgttcgcgg gcgtggtgac gcagcgcaac gtggatgtgg gcgatttgat
      241 cgatgcaggc agcggcgcga gccgagcgct cttcgcgctg gcgcagtcgg acccgttgag
      301 agtctatgtg cagcttccgc aggcttatgc gcagaacgtg acgcaagggc aggatgtcat
      361 cgtcacgcag gcggagttgc cgggccagca gttccacggt tcgatcgcgc atatctccgg
      421 cgcgatcgat gtcccgaccc ggtcgctgca gatcgaagtg cgcttgccta atccggatag
      481 caagctgcgg ccgggcgcct acgtccaggt gtcgctgccg gctaccgtgc gggcgccttt
      541 gctggtgccg ggcaacgcgc tgttgtttcg ctccgaaggg ccacgggttg cggtcgtcga
      601 ccaggatggc aaggtcaatc tgcgcaagat cgtgattgcg caggacctgg ggcagtcgct
      661 ggaaattgaa agcggcattg aagcaaccga caagatcatc atcaatccaa gcgattccat
      721 tgcagacggt gaccatgtcc tgatcgcgcc gcagcagcct gccaagaagg ggacatcgtg
      781 aagcgcgcgc gcccgtggcc ggttcaatgg ccgattctgc cggcacggct caagactctc
      841 aagaccctga tgaccagcac gaccgtggtg gcatccggag cggttctgct gtccgcgtgc
      901 acggttgggc cggactacaa gcagcctcac gccgacgcac cgcccgcatg gcacaccgac
      961 tcgtactggc gtcttgccga gccgtcgcac gcgccgctgg ccccggaatg gtgggccagt
     1021 ttcggcgatg aatcgttgaa tggctttgaa cagcaggcgc tggcggagaa ccagacgctc
     1081 gccgccgcaa gtgcgcatta cgcgcaggcg cgtgcgacgc tcgccaacaa taaggcgcag
     1141 caggtgcccg aggtcgatct cggcgccaac gggtcgcgtt tccggatatc gaaggaccgg
     1201 ccgctgacca actacgccac gccgacccag tcgacggtgc agaacaacat ccagctcggt
     1261 ccgaccatca actacgacac cgacctgttt ggccggattc gccgcgaagt cgagggagcg
     1321 acagcgtctg ccgagcaatc gcgggacgat ctcgccaacg cgcggctcgt actgaccacg
     1381 gacctggcca gcgactactt ttcgatgcgc gaactcgatg ccgagatcga cgtgttgaac
     1441 cggtcagtcg tcctgcagca gaaggcgctg gattacgtca ccacggagca tgacctcggt
     1501 tcggtgtccg ggctcgacgt gttgcagcag aaatccgaac tcgactccac gcgggtccag
     1561 gctcgcctgc tgctcaacca gcgcgcgcag tttgaacatg cgatcgccgc gctgatcggc
     1621 gtgccggcac cgcaattcgc gattgcgccg aaggtgatcg ataacactgt ccccgcgata
     1681 ccgctcggac tgccaagcga tctgctgcag cgacgtcccg acattgcgtc ggccgaacgc
     1741 gcgatggctg ctgcaaatgc gcagatcggc gtggcgaaag ccgcgttttt cccgagcctt
     1801 tcgctgatgc cgggtatcgg ctgggaaagc acgcagttcg ccagcctgct gagcgcacct
     1861 acgctgatgt ggacgctggg cgcgacgctc tcgcaagtcg tcttcgatgg tggccggcgc
     1921 gctgccaatg tcgactttgc gagtgcgggg tatcaggcgg ccgaggcaac ctatcgccag
     1981 acggtgctca atgcattcca gcaggtgcag gatggcgtga ccgggttgtc ggtgctcgat
     2041 gcggcatcga aggagtcgca ggaggcggtc actgacgcgc agcgtttgct ctcgcttgcc
     2101 aacgatcgtt attcgggcgg cctggttgcc ttcctcgatg tgatcaccgc tcagcagtcg
     2161 ctgctcacga gcgagcgtca ggatgtgcag attcatggcc agcaatggac gatgtcggtg
     2221 tcgctggtaa aggcgctggg gggcggttgg gacgtcaacg cggcagcacc ggagaaaacg
     2281 gcggcggcca cgaccaaccc gccaaactga tttgacacgc gagtgacgta aaccgacgcg
     2341 ggccgcacac accggggcgc ttagaacggg tatcgccact cgccgcagga tgagagaaaa
     2401 cgttttccta taatgggagg acgtacataa gaaggcgcgc atgaaattgc tcatcgtgga
     2461 agacgaacac aaggtggttg actatctgcg ctccggtttg acggagcagg ggtggatagt
     2521 cgacgtggcc cttgatggcg aggaaggcac gcatctcgcg atcgaattcg actacgacgt
     2581 gatcgtgctc gacgtgatgc tgcccaaacg cgatggcttc agcgtgctga aggcgctgcg
     2641 cgcgcataag gcgaccccgg tcatcatgct gaccgcgcgc gaccagatca acgaccgggt
     2701 gcgcggcctg cgcgaaggcg ccgacgacta cctgaccaag ccgttctcct tcctggaact
     2761 ggtcgagcgg ctgcatgcgc tggcgcggcg cactcgtgtg caggagtcga cgctgatctc
     2821 gctgggcgac ctgtacgtcg acctgatcgg gcggcgcgcc acgcgtgacg gcgtgcggct
     2881 ggacctgacg gccaaggaat tccagttgct gagcgtgctg gcgcgccgcc agggcgatat
     2941 cctgtcgaag acggcaatca ccgaactggt ctgggacgtc aatttcgaca gtcatacgaa
     3001 tgtggtggaa actgcgatca agcgcctgcg ggccaagctg gacggcccat ttccgaccaa
     3061 gctgctgcac acggtgcgcg gcatgggcta tgtgctggag gtccgcgaag aagcgggaac
     3121 atcatgaatc gatctatcgc ccggcgtctg gctttcatg
//
LOCUS       DATGBK010000671         1780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_239709, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000671 DATGBK010000000
VERSION     DATGBK010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239709"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VKJ77_09535"
     CDS             complement(<1..455)
                     /locus_tag="VKJ77_09535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal RNA small subunit methyltransferase I"
                     /protein_id="HMC45552.1"
                     /translation="MTPLSELALGQQFPAGALYIVATPIGNVADITVRALHVLGLVDR
                     VAAEDTRNTSQLLSRYGISKPTIAVHEHNERSAAENVIAHLRNGERIACVSDAGTPGI
                     SDPGAKLVDAVREAGFAVIPLPGASALTTALSVAGAWVHTFSFIGFLAT"
     gene            469..882
                     /locus_tag="VKJ77_09540"
     CDS             469..882
                     /locus_tag="VKJ77_09540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HMC45553.1"
                     /translation="MRRTSLCHAMRDNFLGNGVSKTIGSAFEQRALEYLQRQRLRFVA
                     RNFACRGGEIDLVMREIGSQRALVFVEVRARRSRQFAAAAASVGAHKQRRLVLAAQYY
                     LMTWRGALPVCRFDVIAFDAGRIVWVRDAFRADTS"
     gene            1168..1755
                     /locus_tag="VKJ77_09545"
     CDS             1168..1755
                     /locus_tag="VKJ77_09545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006023787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HMC45554.1"
                     /translation="MSVERIQQHFRENAAVHREALDTLAFPVAAAIDVLFGALANGSR
                     ILTCGNGGSAANSQRLASALVGHFERERPGLPAIALDANVLTLTAIGNNSAFEEIYSK
                     QIRSLGQAGDVLVVISTSGNSVNLLSAIQAAHEREMFVIAMTGAGGGVISEVLADTDI
                     HICVPSERPARIQEVHLLTIHCLCDGIDAMLLGDE"
BASE COUNT          343 a          505 c          590 g          342 t
ORIGIN      
        1 ttggtggcaa gaaagccgat gaacgaaaac gtgtgaaccc atgcgccggc tacgctgagc
       61 gcggtggtga gggcgctcgc gccaggcaga ggaataacgg caaagccggc ttcgcgcaca
      121 gcatcgacca gttttgcgcc ggggtcggaa atacctggcg tgcctgcgtc ggacacgcac
      181 gcaatgcgct cgccgttgcg cagatgcgcg atcacgttct cggcagcgct gcgctcgttg
      241 tgctcgtgta ccgcgatggt cggcttagaa atgccgtagc gcgacagtag ttgcgacgtg
      301 ttacgcgtgt cctcggcggc cacccggtcg acaagtccga gcacatgcag cgcgcgcacc
      361 gtgatgtccg cgacattgcc gatcggcgtc gcgactatat agagcgcacc agcaggaaac
      421 tgctggccaa gggccaattc ggagagtgga gtcatgaggg cgggtggcat gcggaggacg
      481 tcattgtgcc acgcgatgag agacaacttt ttggggaacg gggtgtcgaa aacaatcgga
      541 agcgcgttcg agcaacgcgc gcttgaatat ctgcagcggc agcgcctgcg ttttgtcgcc
      601 cgcaatttcg cctgtcgcgg cggcgaaatc gatctcgtga tgcgtgagat cggcagtcag
      661 cgtgcactcg tattcgtgga ggtacgcgcg cggcgcagcc gccagttcgc tgctgctgcg
      721 gcgagtgtcg gcgcgcataa acagcggcgg ctggtgctcg cggcgcagta ctacctgatg
      781 acgtggcgcg gtgcgttgcc cgtgtgccgc tttgacgtga tcgcgttcga tgcgggccgt
      841 atcgtgtggg tacgcgatgc ttttcgcgcc gatacgtcgt gaaaacggcc gtatcttaag
      901 tgacgcggac ggctagtgcg gtaaactgcg cggagcctgc gcgccgggtt gatcgaggtc
      961 atatggtctt atgttcaacc gctgcgcgcg agcacgtagc ggcgaaccgt ggatcgtgag
     1021 gcgctggagc tcaagtattg aagtggtgaa gcatgggctt cttcggagaa cttggccgga
     1081 agtcgtcgaa gccagtcgtt gaagcaaatc atcgaagcag cccgtcaatg aactaccgcg
     1141 catggcgcgg ccgataaccg agagtcgatg tccgtcgaac gtatccagca acatttccgc
     1201 gaaaacgcgg cagtccatcg tgaagcactc gacacgcttg ctttccccgt cgccgcagcc
     1261 attgacgtgc tgttcggcgc gctcgccaac ggctcgcgaa tcctcacgtg cggcaacggt
     1321 ggatcagcag ctaactcaca gaggctcgcg tctgcactgg tggggcactt cgagcgcgag
     1381 cggcccggct tgccggctat tgcgctggac gcgaatgtcc tgacgctcac agccattggc
     1441 aataactcgg cgttcgaaga gatctattcg aaacagatcc gctcactcgg gcaggccggt
     1501 gacgtcttgg tcgtgatctc aacgtcgggc aactcggtca acctgctctc ggcgatccag
     1561 gccgcgcatg agcgcgagat gttcgtgatc gcgatgaccg gtgcgggcgg cggcgtgatc
     1621 agcgaagtgc tcgccgatac cgacatccat atctgcgtgc cgtccgaacg gccggcacga
     1681 atccaggaag tccatctgct aaccattcac tgcctgtgcg atggcatcga cgcgatgctg
     1741 ctgggcgacg aatgattctt aaggggaacg agttgatgaa
//
LOCUS       DATGBK010000672         1784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_146938, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000672 DATGBK010000000
VERSION     DATGBK010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146938"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..640
                     /locus_tag="VKJ77_09550"
     CDS             <1..640
                     /locus_tag="VKJ77_09550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013953171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HMC45555.1"
                     /translation="VPVLVDGAQAVPHMKVDVQDLDCDFYAFSGHKLCGPTGIGILYG
                     KAALLERMQPFKGGGDMILSVTFEKTTYNVIPQKFEAGTPPIAAAIGLGAAVDYLSAI
                     GMDAIAAHEHELLDYATEQLKRMPGVRIIGTAADKAAVLSFTLEGVHPHDVGTLLNQD
                     GVAVRTGHHCAQPVMQRFKVPATSRASFAFYNTMAEVDALVAGIRNVQKVFC"
     gene            640..1128
                     /locus_tag="VKJ77_09555"
     CDS             640..1128
                     /locus_tag="VKJ77_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011464158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HMC45556.1"
                     /translation="MSDPKSLYQEVILDHNRKPRNYGALAQASHNAKGHNPLCGDHIS
                     VALNLEGERIASIAFQGESCAICKASASMMTASVKGKTRQDAETLIQEFRDMATGQID
                     VDKQAHHLGRLTVFAGVRDLPTRVKCAILPWHTLHAAFHSVADTSTESENDPMHAPIG
                     DA"
     gene            1141..1701
                     /locus_tag="VKJ77_09560"
     CDS             1141..1701
                     /locus_tag="VKJ77_09560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009665678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HMC45557.1"
                     /translation="MPKIADIEDTPNPNAKKFILREPLTWGITRSYENAGQAMDDLLA
                     AAIFDIEHVTNVFYVDRWLTVTQDGRADWKELLHRVADRIRAAPAANEQSARLTAAAA
                     IPISDMSPDDQQRLYMINGLLDEQIRPYLQGDGGDLHVLALEGNKLTVHYQGACGSCP
                     SSISGTLVSIENLVKTIEPDIEVVAV"
BASE COUNT          363 a          550 c          568 g          303 t
ORIGIN      
        1 cgtgccggtg ctggtggacg gcgcgcaggc ggtgccgcac atgaaagtcg acgtgcagga
       61 tctcgattgc gatttctacg cgttttcggg gcacaagctg tgcggcccga ccggcattgg
      121 catcctctac ggcaaggctg cgctgctcga gcgcatgcag ccgttcaagg gcggcggcga
      181 catgatcctg tcggtcacct tcgagaaaac cacgtacaac gtgattccgc agaagttcga
      241 ggccggcacg ccgccgattg cggccgcgat cggacttggc gcggcggtcg attacctctc
      301 ggccatcggc atggacgcga tcgcagcgca cgagcacgaa ttgctcgatt acgcgaccga
      361 gcagttgaag cgcatgccgg gcgtgcgcat catcggcacc gccgcagaca aggccgctgt
      421 gttgtcgttc acactcgagg gcgtgcatcc gcacgatgtc ggcacgctgc tgaaccagga
      481 cggtgtcgcg gtgcgcaccg gtcatcattg cgcgcagccg gtaatgcagc gcttcaaggt
      541 gccggcaacc tcgcgcgctt cgttcgcttt ctacaacacg atggccgagg tcgatgcgct
      601 ggtcgcgggc atccgcaacg tgcaaaaggt tttctgctga tgtccgaccc taaatccctg
      661 tatcaggaag tcattctgga tcacaaccgg aagccgcgga actatggcgc gctggcgcaa
      721 gcgagccaca acgccaaagg ccataacccg ttgtgcggcg accatatcag cgtggcattg
      781 aatctcgagg gcgagcgcat agcctccatc gcgtttcagg gcgagtcctg cgcgatctgc
      841 aaggcgtcgg catcgatgat gacagcgagc gtcaagggca agacgcggca ggatgcagaa
      901 acgctgattc aggagtttcg cgacatggcg accggccaga tcgatgtcga caagcaagcg
      961 caccatctcg ggcggctcac ggtgtttgcc ggcgtgcgcg atctgccgac gcgcgtcaaa
     1021 tgcgcgatcc tgccgtggca caccctgcac gcggcattcc actcggtcgc ggacacctcg
     1081 accgaatccg aaaacgatcc gatgcacgcg ccgatcggcg atgcctgaac gaaagccgcc
     1141 atgccgaaga ttgccgacat cgaagacacg ccgaatccga acgcgaagaa attcatcctc
     1201 agggagccgc tgacctgggg catcacgcgc tcctatgaga acgcggggca ggccatggac
     1261 gatctgctgg ccgcggcaat atttgacatc gagcatgtga ccaacgtgtt ctacgtcgac
     1321 cgctggctca cggtcacgca ggacggccgc gccgactgga aggaactgct gcaccgggtc
     1381 gcggatcgga tacgggccgc gccagcagcg aacgagcaat ccgcccggct caccgccgcc
     1441 gcggcgatcc cgataagcga catgagcccc gacgatcaac aacgactcta tatgatcaac
     1501 ggattgctgg atgagcagat tcgcccttac ctgcagggcg atggcggcga ccttcacgtg
     1561 ctcgcgctgg aaggcaacaa gctgaccgtg cattaccagg gcgcgtgcgg cagttgcccg
     1621 agctcgattt cgggcacgct tgtcagtatc gagaatctgg tgaaaacgat cgagcccgat
     1681 atcgaagtgg tggctgtgta gcacgccgtt gaaaccagct ttccgaatgt gaaccgagcg
     1741 cggtgcgacc atgcggccgt ggtagcgtag gccggcgcgg ccgt
//
LOCUS       DATGBK010000673         1887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_239745, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000673 DATGBK010000000
VERSION     DATGBK010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239745"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1887)
                     /locus_tag="VKJ77_09565"
     CDS             complement(<1..>1887)
                     /locus_tag="VKJ77_09565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC45558.1"
                     /translation="NAPGSALSTRDLTTAADQIVRKRLETVRGVGSVSIVGGVKRQVR
                     IDVSPDRLQALSVGVDQVIRAVQNENQEIPAGPLTSAGIEQTVQVKGRFQTPDDFKRI
                     IVARRGASNAGHAVTLDQVAQVVDGQEEPDSMALLNGNRALFLSVIKAQGENTVDVAH
                     GIRAEVEVLQKALPPGVKLDITDDSSLDIENSVNEVKGTLLEGALLTIAIVFLFLGSW
                     RSTVITGLTLPIALIGTFAFMFAAGFTINVITLMALSLCVGLLIDDAIVVRENIVRHV
                     QLGSGPRTAALDGTKEIALAVLATTFSIVAVFLPVGFMSGIIGRFFHQFGVTVAAAVL
                     ISMFVSFTLDPMLSSIWPDPALHVRGTRHLARLLGFFERGVERLAQFYQRLLGWSLRH
                     RITTLSIAAATFFGSLFLVPLIGTEFVPNADFSTTQIGLNTPVGTSLEATADKVRQVE
                     AALAQYPEVRYSYATINSGNAQGKNNALITVRLKERRERTRGVQELNQVFRTRLQRIA
                     GIVVTEIGMPDGAGSTKAVQFSLQGDNLDELRRLSAEAQQRLRKIPGLVDLDASLKDD
                     KPIVAIDVRRELASDLGVGVAEVGQALRPLLSGDAISTWRAPDDQDYDVSVRLPSAQR
                     RNVDD"
BASE COUNT          353 a          600 c          582 g          352 t
ORIGIN      
        1 gtcatcaacg tttcggcgtt gtgccgaggg caggcgcacg ctcacgtcgt aatcctgatc
       61 gtcgggcgca cgccatgtgc tgatggcgtc gccggagagc aacgggcgca gcgcctgacc
      121 gacttcggcg acacccacgc ccaggtctga ggcgagttcg cgacggacgt cgatggccac
      181 aatgggttta tcgtccttca ggctcgcatc cagatccacg aggccgggaa tcttccgcaa
      241 gcgctgttgg gcttcggcgg acaaacgccg gagttcgtcc aggttatcgc cttgcaggct
      301 gaactgcacg gccttggtgg acccggcgcc gtctggcatg ccgatctcgg tcaccacgat
      361 cccggcaatg cgctgcaggc gtgtgcggaa cacctggttc aattcctgta cgccgcgtgt
      421 gcgttcgcgc cgctctttca aacgcacggt gatcagcgcg ttgttcttgc cttgcgcgtt
      481 accggagttg atcgtggcgt agctgtagcg aacctcgggg tattgcgcga gcgctgcttc
      541 gacctggcgg actttgtcgg cggttgcttc cagggatgtt cccacgggcg tattcaaccc
      601 aatctgcgtc gtcgaaaaat cggcgttcgg tacgaactcg gtgccgatca gcggcacgag
      661 gaacaggctg ccgaaaaagg tcgcggccgc gatcgacaga gtcgtgatgc ggtgcctgag
      721 cgaccagccg agtagccgct gatagaactg cgcgagccgc tccacgccgc gctcgaagaa
      781 gccgagcaaa cgcgcgagat ggcgtgtgcc acgcacgtgc agcgcgggat cgggccagat
      841 cgacgagagc atggggtcga gcgtgaacga gacgaacatc gagatcagca cggcggccgc
      901 gaccgtcacg ccgaactggt gaaagaaccg gccgatgatg ccgctcatga atcccactgg
      961 caggaacact gcgactatcg aaaacgtcgt ggcgagcacg gcgagggcaa tttccttcgt
     1021 gccatcgagc gcggcagtgc ggggacccga gccaagctgc acatgccgga cgatgttttc
     1081 acgcaccacg atcgcgtcgt ctatcagcaa gcccacgcac agcgacaacg ccatcagcgt
     1141 gatgacgttg atcgtgaaac ccgctgcgaa catgaatgca aacgtcccga tcaacgcgat
     1201 cggcagcgtg agcccggtga tcacggtgct gcgccacgag ccgaggaaca ggaacacgat
     1261 cgcgatggtc agcagcgcgc cctcgagcaa cgtgcccttg acttcgttca cgctgttttc
     1321 gatatcgagt gacgagtcgt cggtgatatc gagcttgacg cccggcggca gcgccttttg
     1381 cagcacttcg acttcggcac ggatgccgtg cgccacatcg actgtgttct ccccctgcgc
     1441 cttgatcacc gataaaaaca gcgcgcgatt gccgttcagc agtgccatgc tatcgggctc
     1501 ttcctgcccg tcgaccactt gcgccacctg atccagcgtg accgcatgcc ctgcattcga
     1561 cgcgccgcgg cgcgcgacaa taatccgttt gaagtcatcg ggcgtctgga agcggccctt
     1621 tacttgcacg gtctgttcaa tacccgccga cgtcagcggc cctgccggaa tctcctgatt
     1681 ctcgttctgc acggcgcgaa tcacctgatc cacgccaacg gaaagtgctt gcagtcgatc
     1741 tggactgaca tcgatcctga cctggcgctt cacgccgccc acaatactca ccgagcccac
     1801 gccgcgcact gtttccaggc gcttgcgcac gatctggtcg gcggcggtcg tgaggtcgcg
     1861 cgtgctcagt gctgagcctg gcgcgtt
//
LOCUS       DATGBK010000674         1527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_77616, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000674 DATGBK010000000
VERSION     DATGBK010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77616"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..758)
                     /locus_tag="VKJ77_09570"
     CDS             complement(<1..758)
                     /locus_tag="VKJ77_09570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010398512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45559.1"
                     /translation="MSIIDVPNDPLTRVIAPYGAGPAELALAIGGLAIVTGEFASMTI
                     LPVIANGLGTSLPTTGHIISAYALGVVIGAPLITIFFAKVPRRAMLIGLMLMFALGNL
                     LSALAPNYPLLLIARFISGVPHGAYFGVAALTAASLVPPDRRARAVGRVMLGLTIANI
                     FGVPLATWLGQWLGRRADFLLVGMLGILTMIGVRIFLPPIHAGGATPRRELGVFRRLQ
                     VWLTLSVIAVGFGGLFAVYTYITPTLLNVTHVAP"
     gene            complement(880..>1527)
                     /locus_tag="VKJ77_09575"
     CDS             complement(880..>1527)
                     /locus_tag="VKJ77_09575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC45560.1"
                     /translation="LLAATGLLDERRAVTHWAHCEHLGQRYPAVRVDPSPIFIRDGAL
                     WTSAGVTAGIDLALALIEDDLGSALALDVARELVVFLKRPGGQAQFSTTLSLQKTGDR
                     FSDLHAWIAENMAADLSIATLAERTGMSERSFVRHYRAQTGITPARAIDQLRLEAARR
                     LLGDTSFPVKRVAARCGFGSEETMRRSFLRSMGVTPQAYRERFSAGETVDTSTQD"
BASE COUNT          322 a          470 c          497 g          238 t
ORIGIN      
        1 cagggtgcca cgtgggtcac gttcagcagc gtcggcgtga tgtaggtgta caccgcaaac
       61 agtccgccga agccgaccgc aatcaccgac agcgtcagcc agacttgcag gcgcctgaac
      121 acgccaagct cgcggcgcgg cgtagcgccg cccgcgtgaa tgggcgggag aaagatgcgt
      181 acgccaatca tcgtaagaat gccgagcatg ccgacaagca aaaaatccgc gcgccggccg
      241 agccattgac cgagccaggt cgccagcggc acgccgaaaa tattggcgat cgtcaggccg
      301 agcatcacgc gtccgacggc ccgcgcgcgc cggtcgggcg gcacgagcga ggctgccgtc
      361 aacgccgcca caccaaaata ggcgccatgc ggcacgccgg aaataaagcg cgcgatcagc
      421 agcagcgggt aattcggcgc gagcgcgctg agcagattgc ccaacgcgaa catcagcatc
      481 aggccgatca acatcgcgcg gcgcgggacc ttcgcgaaga aaatagtgat gagcggcgcg
      541 ccgatcacca cgcccaacgc atacgcgctg atgatatggc ccgtggtggg cagcgaagta
      601 ccgaggccgt tcgcgatgac cgggaggatg gtcatggacg cgaactcacc cgtgacgata
      661 gccaggcccc caatggcgag ggcgagttcg gcgggacccg cgccataggg cgcgatcacg
      721 cgcgtgagcg ggtcattggg gacatcgata atggacattg gggaaaaatt gtgggttgtg
      781 agcgaagcgc aatgcagcat tatcgcgaaa taattaatct tccgcatccg cgaaggctcg
      841 cacggccgtg ctgaacggta ttgctgcgct gccgaaacgc tagtcctgcg tgcttgtgtc
      901 tacggtctcg ccagccgaga aacgttcacg gtaagcctgc ggtgtgacac ccattgaacg
      961 caggaagctg cgccgcatgg tttcctccga tccaaacccg cagcgcgcgg ccacgcgctt
     1021 gacgggaaac gaggtatcgc caagcaggcg acgtgcagct tccaggcgta attgatcgat
     1081 ggcgcgtgcg ggcgtgattc ccgtttgcgc ccgatagtgg cgcacgaagc tgcgctcgct
     1141 catgcccgtg cgttcggcga gcgttgcgat tgacaggtcg gctgccatgt tttcggctat
     1201 ccacgcatgc aggtcgctga aacggtcgcc ggttttttgc agcgacaacg tcgtgctgaa
     1261 ctgcgcctgg ccacccggtc gtttgaggaa caccactagt tcgcgcgcta catcgagcgc
     1321 gagcgcgctc ccgagatcat cctcgatcaa tgcaagcgcg agatcgatgc ctgctgtcac
     1381 gcccgccgat gtccagagcg cgccgtcacg aatgaaaatg ggcgaggggt ccacgcggac
     1441 agcgggatat cgctgcccga gatgttcgca atgcgcccag tgcgtgaccg cacggcgctc
     1501 gtcgagcaag ccggtagcgg ccagcaa
//
LOCUS       DATGBK010000675         1771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286230, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000675 DATGBK010000000
VERSION     DATGBK010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286230"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..418
                     /locus_tag="VKJ77_09580"
     CDS             <1..418
                     /locus_tag="VKJ77_09580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HMC45561.1"
                     /translation="RPVEVGADREQELVQWISNRLGTDVRPPVLTRSGFELMGGRLLP
                     GDDGPVAQFMYHDAKGERITLCISHRKISSDTTAFKLYQDGSVNVFYWIDGDFGYAVS
                     GAIDRKVLLDLSHDVYSQLTAMGGAKAPSGASVSTQ"
     gene            complement(524..1552)
                     /locus_tag="VKJ77_09585"
     CDS             complement(524..1552)
                     /locus_tag="VKJ77_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HMC45562.1"
                     /translation="MGSRPQFIDDLSRSPAGAALASPLGDEALLDAYSQTVISALERV
                     QQAVTFISVERRLPGDKSGRGAQGGSGSGFIFTPDGYLLTNSHVVHDATQIRVTLSDG
                     SKFDADLVGDDPDSDLAVLRIGSADALPHVELGESGKLRVGQIAIAVGNPLGLVQTVT
                     TGVVSALGRSLRSNSGRMIYDVIQTDAALNPGNSGGPLINSAGQVIGVNTAIIAGAQA
                     ISFATAIDTAKWVIMQLFAYGRVRRAYIGVAGTTMPISRRVQRYFELPSASGVHVMEV
                     VKASPAALGGLRTDDRIVAIDTLAVDSVDSLQRSLDASRIDRAVKVTVLRGTQKLELD
                     VTPVEQAG"
BASE COUNT          315 a          545 c          569 g          342 t
ORIGIN      
        1 gcggcccgtg gaagtgggcg cggatcgcga gcaggaattg gtgcagtgga tctcgaaccg
       61 gctgggtacc gacgtgcgtc cgcccgtgct gacgcgttcg ggcttcgagt tgatgggcgg
      121 ccgcttgctg cccggcgatg acggcccggt cgcgcagttc atgtaccacg acgcgaaggg
      181 cgagcgtatt acgctgtgca tatcgcatcg caagatcagc tcggacacga ccgcgttcaa
      241 gctgtatcag gatggatcgg tgaacgtgtt ttattggatc gacggcgatt tcggttacgc
      301 cgtgtccggc gcgatcgacc ggaaggtgct gcttgacctg tcgcacgacg tctattcgca
      361 gttgaccgcg atgggcggcg ccaaggctcc ctcgggcgct tccgtgtcta cgcaataagc
      421 ggatggcagc cgcggtgttc aacaacatta cggctgttcc tgttcttgag catggcgaag
      481 ggccgcgacc aggcggcctt cccgtcacac cacgccggtc gtttcagcca gcctgttcga
      541 ccggcgtcac gtccagctcc agcttttgcg tgccgcgcag cacggtgacc ttcaccgccc
      601 ggtcgatacg cgatgcatcc agcgagcgct gcaagctatc cacgctatca accgccagcg
      661 tgtcgatggc gacgatccgg tcgtccgtac gcaatccacc gagcgcggcc gggctcgctt
      721 tcacgacctc catcacatgt acgccgcttg ccgacggcag ctcgaaataa cgctgcacgc
      781 ggcgtgagat gggcattgtt gtgccggcca cgccgatata ggcacgccgc acgcgcccat
      841 acgcgaagag ctgcatgatg acccacttgg cggtatcgat tgctgtcgcg aacgaaatcg
      901 cctgggcgcc agcaatgatc gccgtattca caccgatcac ctgacccgcc gagttgatca
      961 gcgggccgcc cgagttgcca ggattgagcg cggcgtcggt ctggatcacg tcgtagatca
     1021 tgcgtccgga gttcgaccgc agggaccgtc caagcgccga gaccacgccg gtagtgaccg
     1081 tctgcacgag gccgagagga ttcccgacgg cgatggcgat ctgcccgacg cgcaacttgc
     1141 cggattcacc gagctcgacg tgcggcaacg catcggctga gccaatccgc agcaccgcga
     1201 ggtcgctgtc cggatcgtcg ccgacgagat cagcatcgaa tttcgagccg tccgagagcg
     1261 tcacgcggat ctgcgttgcg tcgtgcacga cgtggctatt tgtcagcaga tagccgtcgg
     1321 gtgtgaagat gaaccccgag cctgagccgc cctgtgcacc gcggccgctc ttgtcgcccg
     1381 gcaaacgtcg ttcgactgaa ataaaggtga ccgcctgctg cacgcgttcg agcgcgctga
     1441 tcacggtctg ggagtaagcg tcgagcaggg cctcgtcgcc gagcgggctg gcgagggcgg
     1501 cgcccgcggg gctgcgtgaa agatcatcga tgaattgggg acggcttccc atgatcgtgc
     1561 tccggataaa tggatcatga gatgcgggat tcttgggggt atttcaaggc cgaggcgcgc
     1621 tttccagaac gcttgccctg gcctccggcc ggctcagcat ttccgctgca atcgatatca
     1681 cgattgatcg tttagtgctg gacgcgcggg ttgttagcat ggtcggctgc ctaatctgcc
     1741 tgcctaatat gcttgtgata gccccatgaa a
//
LOCUS       DATGBK010000676         2229 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_332229, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000676 DATGBK010000000
VERSION     DATGBK010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332229"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..709
                     /locus_tag="VKJ77_09590"
     CDS             <1..709
                     /locus_tag="VKJ77_09590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycogen debranching enzyme GlgX"
                     /protein_id="HMC45563.1"
                     /translation="SLGTPMLLAGDEFGRTQRGNNNAYCQDNEISWIDWTQADSPAGR
                     TMTEFVARVIALRKNYPLLREMRFLHGDREVLPGLYDVSWFDESGAALTIDAWQDPEG
                     RALTLRRAGPGLNGEVDVILIMMNGSSQALNFSAPAPHLEWNVLMDSAVPDALQCPLI
                     GGELEVQPHSVAVLLAQPTGDADWQAVWMAGAHEGPRLLTALPPDPGTIGARRTAEPW
                     KAPAPAPEHAPPAKEEN"
     gene            811..>2229
                     /gene="treZ"
                     /locus_tag="VKJ77_09595"
     CDS             811..>2229
                     /gene="treZ"
                     /locus_tag="VKJ77_09595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malto-oligosyltrehalose trehalohydrolase"
                     /protein_id="HMC45564.1"
                     /translation="MSETPIDPHKRHHAYCLPFGAHLTDAGHTRYRFWAPSLKTVQLE
                     LYPNGESAAPTLIDMTPAGDGWFEARAEGGAGTRYRYRISADLAVPDPVSRFQPDDVH
                     GPSEVIDARTYRWENTNWHGRPWEETVLYEVHVGALGGYAGVTRRLKEFAHLGVTAIE
                     LMPLNDFSGSRNWGYDGVLPYAPDSAYGTPDELKTLIDTAHGLGLMVFLDVVYNHFGP
                     DGNYLSAYAKSFFREGVNTPWGPAIDFERPQVRDFFFDNALYWLKEYRFDGLRLDAVH
                     AINDDEWLRELSERVRSSIEPQRHVHLVLENENNTSNLLESHFNAQWSDDSHNTLHVL
                     LTAEDESYYGAYSDQPIQKLARVLGEGFVYQGEPSPIHDGKPRGEPSAHLPPTAFVMF
                     LQNHDQVGNRAMGERLRSLCSEDSLYAATGLMLLTPQIPMLFMEEQYGSTQPFLFFTD
                     YHDELADAVREGRRREFAKFSAF"
BASE COUNT          444 a          714 c          689 g          382 t
ORIGIN      
        1 gtcgctcggc acccccatgc tgctcgccgg cgacgaattc ggccgcacgc aacgcggcaa
       61 caacaacgcg tattgccaag acaacgagat ttcctggatc gactggacgc aggcggattc
      121 gcccgccggc cgcacgatga cagagttcgt cgcccgcgtc atcgcgctgc gcaaaaacta
      181 cccgctgttg cgggaaatgc gctttctcca cggcgatcgc gaagtactgc ccggcctcta
      241 cgacgtcagc tggttcgacg aaagcggcgc ggcgctgact atcgacgcgt ggcaggaccc
      301 cgaagggcgt gcgctgacgc tgcgtcgcgc ggggcccggt ctgaatgggg aagtcgatgt
      361 catcctgatc atgatgaacg gttcgtcgca agcgctgaac ttctccgccc ccgcaccgca
      421 cttggaatgg aatgtgctca tggatagcgc tgtgcccgat gcactgcagt gcccgctgat
      481 cggcggggaa ctggaagtgc agccgcacag cgtggccgtg cttttagcgc agccgaccgg
      541 ggacgccgac tggcaggccg tctggatggc tggcgcacac gaggggccgc ggttgctgac
      601 ggcgttgccg ccggacccgg gcacgatcgg agcgcgacgg acagcggaac cctggaaagc
      661 gcccgcgccc gcgcccgagc acgcgccgcc cgcaaaggag gaaaattgaa cggctgggag
      721 acggctaaat cgacacaaag acgtcaggca aaaacgccgg gcaggctcca agccaagtat
      781 ctgaccaagc gcactgaagg cacacacatc atgtccgaaa ccccaatcga tccgcacaag
      841 cgtcaccatg cctattgcct gccctttggc gcccatctca cggatgccgg acatacgcgc
      901 tatcgcttct gggcaccgtc gctgaagacg gtgcaacttg agctctaccc caatggagag
      961 agtgcggccc ccacgctaat cgacatgacc cccgccggcg acggctggtt cgaagcacgt
     1021 gccgaaggcg gcgcgggcac gcgttaccgg tatcggatca gtgcggatct ggcggtgccg
     1081 gatccggtct cgcgtttcca gcccgacgac gtccatggcc cgagcgaagt gatcgatgcg
     1141 cgtacgtatc gttgggaaaa caccaattgg cacggccggc cgtgggaaga aaccgtgctt
     1201 tacgaagtgc acgtgggcgc gctgggcggt tatgccggcg tgacgcgccg cctgaaggaa
     1261 ttcgcgcatc tcggggtgac ggccatcgaa ctgatgccgc tcaacgactt cagcggcagc
     1321 cgaaattggg gttacgacgg cgtgctgccc tatgcgcccg attcggccta cggcacgccc
     1381 gatgaactga agacgctgat cgacaccgcg cacggcttag gcctcatggt cttcctcgac
     1441 gtggtctata accacttcgg accggacggc aactatctga gcgcctacgc caagtcgttc
     1501 ttccgcgaag gcgtgaatac gccgtggggt ccggcgatcg atttcgaacg tccgcaggtg
     1561 cgcgacttct tcttcgacaa cgcgctgtac tggctgaagg aatatcgctt cgatggcctg
     1621 cgcctggacg ccgtccacgc catcaacgat gacgaatggt tgcgcgaact atcagagcgc
     1681 gtgcgttcgt cgatagaacc acagcggcac gtgcatcttg tgttggagaa cgagaacaac
     1741 acgtcgaacc tgctcgaatc gcatttcaac gcgcaatgga gcgacgactc gcacaacacg
     1801 ctgcatgtcc tgctgacagc tgaggacgag agctactacg gcgcgtacag cgaccagccg
     1861 atccagaagc ttgcgcgggt gctcggcgag ggttttgtgt accagggcga gccctcgccc
     1921 atccacgacg gcaagccgcg cggcgaaccg agcgctcact tgccgcccac cgctttcgtg
     1981 atgtttttac agaaccacga tcaggtcggc aaccgtgcaa tgggcgagcg cttgcgctcg
     2041 ctgtgcagcg aagactcgct ctacgccgcg accggcctga tgctcctcac tccgcaaatt
     2101 ccgatgctgt tcatggaaga gcagtacggt tccacgcagc ccttcctgtt cttcaccgac
     2161 tatcacgacg aactcgccga tgccgtgcgc gaagggcgtc gccgagaatt tgcgaagttc
     2221 tccgcgttc
//
LOCUS       DATGBK010000677         6819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_8045, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000677 DATGBK010000000
VERSION     DATGBK010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6819
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8045"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..479
                     /locus_tag="VKJ77_09600"
     CDS             <1..479
                     /locus_tag="VKJ77_09600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007742665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC45565.1"
                     /translation="LYNIVDRTAEVEQLPAAAHYGLGVVPYSPLARGVLSGKYAVDNP
                     PPADSRAGRGDKRIQQTEWRPESLRIAQTIADHAAKRGTTSIAFALAWVLKNRIVSST
                     IAGPRTEAQWDSYVDALKLQLGPEDEKLVDSLVAPGHASTPGYTDPGYPIEGRRVI"
     gene            664..1125
                     /locus_tag="VKJ77_09605"
     CDS             664..1125
                     /locus_tag="VKJ77_09605"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HMC45566.1"
                     /translation="MTASRLPINPGICNNTALRKAARRLTRFYDACMAETGLRATQYA
                     ILNLLATRGPTNMAALADLLSMDRATMGHNLRPLERDGLVIIQIGREDRREREVVLSS
                     VGVNIEARSKPSWLKAQASFEKEFGKQDALAMRRMMARVTQLELDPEEATS"
     gene            1282..1746
                     /locus_tag="VKJ77_09610"
     CDS             1282..1746
                     /locus_tag="VKJ77_09610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007734639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HMC45567.1"
                     /translation="MILGAAHLSAYAAATHEFTDKDRQEVKDVFLRQAAAATAHDIVA
                     FESVFASAPAGQPDPVVLIARPYRFWGKPALIAHFKETFKGVWKFDPDVESIKIIPLT
                     ADVAQLYAETQITGGPLDVAAKPAPYLVYEVAVRTAEGWRIAAIVPQAAQPK"
     gene            complement(1863..3827)
                     /locus_tag="VKJ77_09615"
     CDS             complement(1863..3827)
                     /locus_tag="VKJ77_09615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HMC45568.1"
                     /translation="MQLGVCYYPEQWPRSMWADDAKRMAELGITHVRIAEFAWSRMEP
                     RAGEFVWEWLDEAIETLAAAGLKLVLGTPTASPPKWLIDAHPEVLPVRADGVRWNFGS
                     RRHYDISSEIYRRECVRFVTAMAERYGRHPSIIAWQTDNELGCHDTVPSYSTAALNRF
                     QAWLRLRYESVSALNEAWGNVFWSMEYPSFDAIGLPNLTPTDANPIHLLDFRRFMSDE
                     VASFHREQIEVLRQHAPHADLLHNFMGFFTTFDHYRFAGDNAIDVAAWDSYPIARTES
                     IALPDEQKARYARTAHPDVSAFDHDRYRAIGRGRFWVMEQQAGPVNWASWNPVPAKGM
                     VRLWAYEAFAHGAELVSYFRWRQCPFAQEQMHSGLNLPNNELSPGGLEVQLAAREISE
                     SSALSGLGAPTRAATAIVFDYETQWMFEIQRHGKTFDYQMLVFDYYEALRELGLDVDI
                     VSSKADLSQYRLVVVPSIAVIDDTLVGQVEKSSAQWVFGPRSGSKTTAFAIPSSLPPG
                     ALQQVLPMQVLEVETLRPTLTPALSFGDIEGVAIHWREHVRANGDTRVDAQFDDAWPA
                     VLSRGNVLYVAAWLSHGLHRAVLEQAAKEAGIETQLLADGLRIRRRGDLTFAFNFGEQ
                     QVEAPAQGNATFVLGQRQLATGDVCAWRDA"
     gene            complement(3883..4734)
                     /locus_tag="VKJ77_09620"
     CDS             complement(3883..4734)
                     /locus_tag="VKJ77_09620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006024176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HMC45569.1"
                     /translation="MYPLPVERWKPLNRRLYKASLPLALLIWLLPMLAVLVTSIRSSD
                     ELAQGDYWGWPKHFALIENYGTALTQTPMLHYFANSVLITVPSVIGAIVLASMAGFAL
                     ATYRFPGNTAVLFAFVAGNFVPIQILMIPVRDMALKVGLFNTVWALVIFHVSFQTGFC
                     TLFLRNFIKQLPFELIEAARVEGASEWTIYLRIVLPLIRPALAALGILVFTFVWNDYF
                     WALCLTQGDEAAPITVGVAALKGQWTTAWNLVAAGSVLAALPSVLMFFAMQKHFVAGL
                     TFGASKG"
     gene            complement(4754..5659)
                     /locus_tag="VKJ77_09625"
     CDS             complement(4754..5659)
                     /locus_tag="VKJ77_09625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HMC45570.1"
                     /translation="MSDSVARRLPAARRRHVSTTRRHQHRAAFFFLLPGCALFCLCVV
                     YPIISSISLSFYNWDGMTPKTFAGFDNYIELFHSDTFYTALKNNLIWLAFFLLAPPLG
                     LLFALYLNQHIRGMRIVKSLFFAPFVLSGVVVGLVFSWFYDPGFGLLRLIVGHGIPVL
                     GDPHTVTLGIIFAALWPQTPFCMVLYLTGLTAINPEVVEAARMEGAKGVALLWHVILP
                     QLRPATFMAVVLTVIGALRSFDLIAVMSGGGPFDSSTVLAYYMYDQAIKYYREGYSAA
                     IAVVLFAIMLVYIVFHLRRMLREER"
     gene            complement(5733..>6819)
                     /locus_tag="VKJ77_09630"
     CDS             complement(5733..>6819)
                     /locus_tag="VKJ77_09630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012372363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HMC45571.1"
                     /translation="ANPDVDLKVTYITEEAYKVQMGGWLATDPPDIVSWHDGERMAYY
                     AQRGLLEDLSPDWSKNGWSQQYASVKEASTYKGKQYAAPLGYDAYGFFYRKDLFEKAG
                     IKGEPKTWDEFLDACKKLKASGVAPIAVAARDSWTLAAWFDYLDLRINGNAFHQQLMA
                     GEIPYTDPRVKKVYAAWKTLIDDHYFIEDALSYDLDSIAPFLANGKASMMLMGTFFSA
                     SIPASIRPQTGFFRFPVIDANVPTAEDGPVNVLLIPAKAKNKADAHKLLAFMEQPQIN
                     ADLAKGWGQLPSNSQSAEPEDEISKVGFQTLANTKGGIAQFYDRDMTKEMADEGMKAM
                     QQFYSDPSQLDAVLVRLEATRKRIYRK"
BASE COUNT         1506 a         2086 c         1947 g         1280 t
ORIGIN      
        1 cgctctataa cattgtcgac cgtacggcgg aagtcgaaca actgccggca gcggcgcact
       61 acggtcttgg cgtggtcccg tacagcccac tcgcgcgtgg cgtcctcagc ggcaaatatg
      121 cggtggataa cccgccgcca gccgactcgc gcgcaggccg tggcgacaag cgaatccagc
      181 agaccgagtg gcgcccggaa tcgctcagga tcgcacaaac tatcgcggat catgccgcga
      241 agcgtggaac aacatccatt gccttcgctc tcgcatgggt actcaagaac cgcattgtca
      301 gcagcaccat cgcgggtccg cgtaccgaag cgcagtggga cagctacgtc gacgcactga
      361 agttgcagct cggacccgag gacgaaaagc ttgtcgacag cctcgttgca ccggggcatg
      421 cgtcgacacc tggctatacc gatcccggat acccgatcga agggcgacga gtcatctgaa
      481 gtaacggcct aattcgcttg agcccccgac gccggcttgc atccccttgc tgcaagctgg
      541 cgcatccggc aacgcagcct atgcgggcaa agtcaccgcc aatccagtcc acaccgatcc
      601 gcttgacaat agtgttatat gcccataata atggcgacaa atatccttgt cgtttgatcc
      661 aacatgactg catctcgctt gcccatcaac ccaggcatct gtaacaacac cgctctgcgt
      721 aaagctgcgc ggcgccttac ccgcttctac gatgcctgca tggcagaaac gggtttgcgt
      781 gccacccaat acgccatcct gaacctgctc gcaacccggg gacccactaa catggccgcg
      841 cttgcagacc tgttgtcgat ggatcgcgca accatggggc acaacctgcg tccgctggaa
      901 cgcgacggac tggtcatcat tcaaatcggc cgcgaagacc gccgcgagcg agaagtggtt
      961 ttgtccagcg tgggcgtaaa tatagaggcg cggagcaaac cctcatggct caaggcgcaa
     1021 gcaagctttg aaaaagaatt cggcaagcaa gacgcgttgg caatgcggcg aatgatggct
     1081 cgagtcacgc agctcgaact cgaccccgag gaagcaacct cttgattttt tacagacgta
     1141 gtatctgaca ccattacccc acggcatgca gcgagaaaat cacgttctct cgctgcaaaa
     1201 aaattcctga tacaggcata taagactatt tccatgaata tacatcgcag tcggaaaacc
     1261 ctcgcttcac tcatcgccgc cgtgatcctc ggcgccgccc atctatcggc ctacgccgct
     1321 gcaacgcatg aattcactga caaggacagg caagaggtga aggacgtttt tctccgtcag
     1381 gcggctgccg ccactgccca tgacatagtg gcgttcgaaa gcgtattcgc atcggcgccg
     1441 gctggtcagc ccgaccccgt cgtgttaatc gctcgcccgt accggttctg gggaaagccg
     1501 gcgctcatcg cgcacttcaa ggaaacattc aaaggcgtgt ggaagttcga tccggacgta
     1561 gagagcataa agatcatccc cctgaccgcg gatgttgcgc agctgtatgc ggagacgcag
     1621 atcacgggcg gccccctgga cgtggcggcc aagcccgccc cctacctcgt gtatgaggtt
     1681 gctgtgcgga cggccgaagg ctggcgcatt gcggcgatcg tgcctcaggc tgcgcagccg
     1741 aagtaacgcc gttttgcgac ctgaagtctt ctgctatgaa gacagccgcc ctgcggacgt
     1801 cgctgcgcta acgccttcgg aacgcgttca gcgacgtcac gtcgatcgcc ggcttaatcc
     1861 gtctaagcgt ccctccacgc gcagacatcg ccggtcgcaa gctgcctctg cccgagcacg
     1921 aacgtcgcat tgccctgtgc cggagcttct acttgctgct cgccgaagtt gaacgcgaag
     1981 gtcagatcgc cgcgccgacg aatgcgcaac ccgtcggcta gcagttgagt ttcaattccg
     2041 gcctctttcg ccgcctgctc cagcaccgcg cgatgcaatc cgtgcgatag ccacgccgcc
     2101 acatatagaa cgtttccgcg gctcagcaca gccggccacg catcgtcgaa ctgcgcatcg
     2161 acacgcgtgt cgccattggc gcgaacatgc tcacgccaat gaatcgcaac accttctatg
     2221 tcgccgaaag aaagcgcggg cgtgagcgtc gggcgcagcg tctcgacttc cagcacttgc
     2281 atcggcaata cctgttgcag tgctccgggc ggaaggctcg agggaatcgc aaatgctgtc
     2341 gtcttcgagc cgctcctcgg accgaatacc cattgtgcag agctcttttc tacctgtccg
     2401 acgagcgtat cgtcgatgac ggcaatgctt ggaactacca ctagccggta ttgcgacaga
     2461 tcggccttgc tcgaaacgat atcaacgtcc aggccgagtt cacgcagcgc ctcgtaatag
     2521 tcgaacacca acatctggta gtcgaaggtt ttgccgtgac gctgaatctc gaacatccat
     2581 tgtgtctcat agtcgaacac gatcgcggtg gcagcacgcg tcggcgcgcc gagtcctgac
     2641 agggccgacg attcactaat ctcgcgagcc gccagctgca cctcaagacc gcccggcgac
     2701 agttcgttgt taggcagatt aagtccggag tgcatctgtt cctgcgcaaa cggacactgg
     2761 cgccagcgga aataagacac cagttccgcg ccgtgcgcga acgcctcgta agcccaaagc
     2821 ctgaccatac ccttggccgg caccggattc cacgatgccc agttaaccgg tcccgcctgc
     2881 tgctccatca cccagaatct tccacggcct atcgcccgat aacgatcgtg atcgaaggcg
     2941 gagacatcgg gatgcgcggt ccgtgcgtat cgcgctttct gctcgtcagg cagcgcgatc
     3001 gattcagtac gtgcgattgg atagctatcc cacgcagcca cgtcgatcgc gttatctcca
     3061 gcaaaacggt aatgatcgaa ggtcgtgaaa aagcccatga agttatgcag caggtcggca
     3121 tggggcgcat gctgccgcag cacctcgatc tgctcgcgat gaaaactcgc tacctcgtcg
     3181 gacatgaagc ggcggaagtc gagcagatgg atcggattcg catcggtggg tgtcaggttc
     3241 ggcaagccga tagcatcgaa cgacggatac tccatgctcc agaacacatt gccccacgct
     3301 tcgttgagcg cgctaacgct ctcgtagcga agccgcagcc acgcctgaaa acggttcagt
     3361 gcggcggtcg aataactcgg cacggtatcg tgacagccga gttcgttatc ggtctgccag
     3421 gcgataatag acgggtgccg cccgtaacgc tccgccattg cagtaacaaa acgcacgcac
     3481 tcacgccgat agatttcgct ggaaatatcg taatggcgac gtgagccgaa gttccagcgc
     3541 acgccatccg cacgcaccgg caacacctcc ggatgcgcgt cgatcagcca tttcggcggc
     3601 gacgcggtcg gtgtacccag cacgagcttc agccctgcag ccgctagcgt ctcgatggct
     3661 tcgtcaagcc attcccagac gaattcaccc gcgcgcggct ccatccggct ccacgcgaat
     3721 tccgcaatcc gcacatgcgt gatgccgagt tcggccatac gctttgcatc gtcggcccac
     3781 atcgaacggg gccattgttc cgggtaatag caaacaccaa gttgcatgag aaagtctctt
     3841 taatatgtga cggaggtggc aaaggcgacc gcaagcaagc gctcagccct tgcttgcacc
     3901 aaaagtcagg ccggcgacga aatgcttttg catcgcgaag aacatcagca cggagggcaa
     3961 cgcggccagc accgaaccgg ccgcgacgag gttccacgca gtcgtccatt gccccttgag
     4021 cgccgcgacg cccacggtga tcggagccgc ctcatcgcct tgcgtgaggc acagcgccca
     4081 aaagtagtcg ttccagacaa acgtgaacac gagaatgccg agcgcggcga gcgcgggccg
     4141 aatcagcggc agcacaatgc gcaggtagat cgtccattcg ctcgcccctt ccacgcgcgc
     4201 cgcctcgatc aactcgaacg gcaactgctt gatgaagttg cgcaggaaca gcgtgcaaaa
     4261 gccggtctga aatgacacat ggaaaatcac cagtgcccac acggtattga acaggcctac
     4321 cttcagcgcc atatcgcgta ccgggatcat caggatctgg ataggtacga aattgccggc
     4381 aacgaacgcg aacagcacgg cggtattgcc cgggaacctg taggttgcca acgcaaagcc
     4441 tgccatggac gccagcacga tcgcgccgat caccgacggc accgtgatca gcacgctatt
     4501 ggcgaagtaa tgcagcatcg gcgtttgcgt gagcgccgtg ccgtagtttt cgatcagcgc
     4561 aaaatgcttc ggccagcccc aatagtcgcc ttgcgccagt tcatccgaag aacgtatgga
     4621 ggtgacgagc acggccagca tcggcaacag ccatatcagc agcgcaagcg ggagtgaggc
     4681 tttataaagc ctgcggttaa gcggtttcca gcgttcgacg ggaagcggat acatgacagg
     4741 tgactcctgg aaatcagcgt tcttcgcgca gcatgcggcg cagatggaac acgatataga
     4801 cgagcatgat ggcgaacagc acgactgcaa tcgctgcgga atagccttcg cggtagtact
     4861 tgatcgcctg gtcgtacatg taataggcga gcacggtgga actgtcgaac ggccctccgc
     4921 cgctcatcac ggcgatcagg tcgaagctgc gcagcgcgcc gatcacggtg agcaccacgg
     4981 ccatgaaggt cgcagggcgc aattgcggaa ggatcacgtg ccatagcagc gccacgccct
     5041 tcgcgccttc catgcgcgcc gcctcgacca cttcgggatt gatggccgtc agtccggtga
     5101 ggtacagcac catgcagaac ggtgtctgcg gccacagcgc ggcaaagatg atgccgagcg
     5161 tcaccgtgtg tggatcgccg agtacaggaa tgccgtggcc gacaatcaga cgcaacaaac
     5221 caaagcccgg gtcataaaac cagctgaaca cgagacccac caccacgcct gacagcacga
     5281 acggcgcgaa gaacagcgac ttcacaatgc gcatgccacg gatatgctgg ttcagataca
     5341 acgcgaacag caagccgagc ggcggcgcta gcaggaagaa cgcgagccag atcaggttgt
     5401 tcttgagcgc cgtgtagaag gtgtccgagt ggaacagttc gatgtagtta tcgaagccgg
     5461 cgaatgtctt cggcgtcatc ccgtcccagt tataaaagct gagggaaatg ctgctgatga
     5521 tcggataaac cacgcacagg caaaacaacg cacaacctgg cagcaggaag aaaaacgcgg
     5581 cgcggtgttg gtgacggcgt gtagtagaga cgtgccggcg ccgagccgcg ggtaagcggc
     5641 gcgctacgga atcagacatg atcgggcctc gtcagggatc gttggcgagc gccagccgtt
     5701 gatacaacat gcaaccgctg gcgctgctgg gcttacttcc tgtagatacg cttgcgggtc
     5761 gcttcgaggc gaacgagcac ggcgtcgagt tgcgacggat cgctatagaa ctgctgcatc
     5821 gccttcatcc cttcgtcggc catttccttc gtcatgtcgc gatcgtagaa ctgcgcaatg
     5881 ccgcccttgg tattcgcgag cgtctggaaa ccgaccttcg aaatctcgtc ttcaggttct
     5941 gcggactggc tgttcgacgg cagttgcccc cagcccttcg cgagatcggc gttgatctgc
     6001 ggctgctcca tgaaggccag caacttgtgg gcgtcagcct tgttttttgc cttcgccggg
     6061 attagcagga cattgaccgg cccgtcttcg gccgtcggca cattcgcgtc gatcacgggg
     6121 aaacggaaga agccagtttg cggacggatg gaggccggaa tgcttgcgga gaagaacgtg
     6181 cccatcagca tcatcgaagc cttgccgttc gcgagaaaag gcgcaatgga atcgagatcg
     6241 taggacagcg catcttcaat gaagtagtgg tcgtcgatca gcgttttcca ggcggcatag
     6301 acttttttca ctcgcggatc ggtgtacgga atttcgcctg ccatcaattg ctgatgaaac
     6361 gcgttgccgt taatgcgcag gtcgagatag tcgaaccatg cggcaagcgt ccagctatcg
     6421 cgagcagcta cagcgattgg agcaacgccg cttgccttca gcttcttgca ggcatcgagg
     6481 aattcatccc aggttttcgg ctcgcccttg atgcccgcct tctcgaacag atccttgcga
     6541 tagaagaacc cgtaagcgtc gtagccgagc ggcgccgcgt attgcttgcc cttgtacgtg
     6601 gatgcttctt tcaccgacgc atattgctgc gaccagccgt tcttgctcca gtccggcgac
     6661 aagtcttcca gcaggccgcg ttgtgcgtaa tacgccatgc gctcgccgtc atgccacgag
     6721 acgatgtccg gcggatcggt ggcgagccag ccgcccatct ggaccttgta tgcctcttcg
     6781 gtgatatagg tcaccttgag gtcgacgtcg gggttagct
//
LOCUS       DATGBK010000678         2995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_332251, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000678 DATGBK010000000
VERSION     DATGBK010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2995
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332251"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1207)
                     /locus_tag="VKJ77_09635"
     CDS             complement(<1..1207)
                     /locus_tag="VKJ77_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadG family pilus assembly protein"
                     /protein_id="HMC45572.1"
                     /translation="MNRLPTSPGKPTPRGRKRQRGVASVLAAFWLLVAVAALAAIDVG
                     NVFYQRRVMQSVADMAANAGAQVVDNACSRAPTTAFGSAGANGFNASASGNSITTTCG
                     RWDPTLYAGPSFYAANATPSNAVQVTVSKQVPYFFLGTGRVVSATGLAQAVNVGAFTI
                     GTTTASVDPTVITGLLNAMLGTNINTLQISAVGYQGLAQSRIKIGDLVTAAGVGTVSQ
                     LLAMNVTAAQLASLMLTALQTTQVANANLSVALGALQAVVSANIPGSQTFPLGAVNGT
                     PGLLQVGLANTQSALTATISPLDALFVAADIAQAGKSAVNVSTGLNLGVATATLQVQV
                     IQPPVLAIGEAGQTPAGAWRTVATSSQVRAYLVVSLGAVPGSFLGLGSTPVLSLPISL
                     ELTPGNAWLQ"
     gene            complement(1209..1637)
                     /locus_tag="VKJ77_09640"
     CDS             complement(1209..1637)
                     /locus_tag="VKJ77_09640"
                     /inference="COORDINATES: protein motif:HMM:NF023687.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3613 domain-containing protein"
                     /protein_id="HMC45573.1"
                     /translation="MDEYLTRRGSCRTSALTAGWVAALFSMAIAASAAAQTQTQLTSQ
                     EPSAAVQIQQQAQPQPQPTAPVKTVAVTDHVTLIGDATRSMLALQRSGQLAAPAQPML
                     GAEASAAYARYLKSFDHPIPEHLDSSVGTVGGAIGGGASN"
     gene            complement(1649..2515)
                     /locus_tag="VKJ77_09645"
     CDS             complement(1649..2515)
                     /locus_tag="VKJ77_09645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein"
                     /protein_id="HMC45574.1"
                     /translation="MLACTVFAGLGGCASKMESGYGVGIQAEREAALQQSQQKQDAPD
                     TPGMYLALIDRMQSQGLFYASLAHIDAYEKQYGTTPDTTLLRADALRQTGQAQGSADA
                     YTKLLNTPLAARGYRGLGLLAGAAGEFGKASEEFDAAVRLQPTDALTLSDLGYARLRL
                     GDVAGARVPLMKAVELAQDNPKILSNVALFLLADGQPAAAQGLITQQRFSPEVQQAIR
                     ADAQRIAGASTQATHARAADVAATTTEHARVPMVRAPQTVDSLLNAQLPLTQTFDPSG
                     AMSGKQPQLVAR"
     gene            complement(2579..>2995)
                     /locus_tag="VKJ77_09650"
     CDS             complement(2579..>2995)
                     /locus_tag="VKJ77_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HMC45575.1"
                     /translation="QGVGLSLDQCLQVMINDFATVLPVLSQELALAHRQFTTGRTREQ
                     SLSRLATSYESDDLNAVMRLVVQVDKHGGAVQEPLRLFGDRLRESRRATLRERIGALT
                     VKMTGVMVVTLLPALLIMTAGPGFIAIYHSLSTMHR"
BASE COUNT          546 a          986 c          900 g          563 t
ORIGIN      
        1 actggagcca ggcgtttccg ggcgtgagct caagtgatat cggcaaactc agcacgggcg
       61 tcgaacccag accgagaaac gaaccgggca ctgcacccag gctcacgacg agataagcgc
      121 gtacttgcga cgacgtcgcg acggtccgcc acgcgccggc cggcgtctgc ccggcctcgc
      181 cgattgcaag taccggcggt tggatcacct ggacttgcaa cgtagcggtt gcgacaccga
      241 gattcagccc ggtacttaca ttcacggcgg actttccggc ctgagcgatg tcggccgcga
      301 cgaacagcgc atccagcggg ctgatcgttg cagtgagcgc ggactgggta ttggcgagtc
      361 caacttgcag cagccccggt gtgccattca ccgcgcctaa ggggaacgtc tgcgagcccg
      421 gaatattcgc gctcacgacg gcctgcagcg cacctagcgc caccgataaa ttcgcgttcg
      481 caacctgagt ggtctgtaac gcggtgagca tgaggctagc aagttgtgcg gcggtaacgt
      541 tcatagcaag caattggctc accgtgccta cgcccgcggc cgtcacgagg tcaccaatct
      601 ttatacgcga ctgtgccagc ccttggtaac ccaccgccga tatctgcagc gtgttgatat
      661 tcgtcccaag catcgcgttc aacaggccgg tgatgacggt cggatcgacg cttgccgttg
      721 tcgtgccaat ggtgaacgcg cccacgttga ccgcttgtgc caaccccgtc gcgctgacta
      781 cccgtcctgt tcccaggaag aaataaggca cttgcttcga caccgtcacc tgcaccgcat
      841 tactcggtgt agcgttcgct gcgtagaagc tcggaccggc atagagcgtc ggatcccagc
      901 gcccgcaggt cgtggtaatc gagttgcctg acgccgacgc gttgaagcca ttcgcgcccg
      961 cactgccgaa cgcggtggtt ggtgcacgcg agcaagcgtt atcgacaacc tgggcgcccg
     1021 cattcgccgc catgtccgcg acgctctgca tgacgcgccg ttgataaaac acattaccca
     1081 catcaatagc ggcaagcgct gcgaccgcta ccagcagcca gaacgccgcc aacacgctcg
     1141 ccacgccacg ctgccgtttg cggccgcgcg gtgtcggttt gcccggggat gtcggcaggc
     1201 ggttcatgtc agttcgacgc tccgccgcct atcgcgccac cgactgtgcc caccgacgaa
     1261 tccagatgtt ccggaatcgg gtgatcgaag gacttcagat aacgggcgta cgcggcactt
     1321 gcctccgcac ccagcatcgg ctgtgccggt gccgccaact ggccgcttcg ttgtaacgcg
     1381 agcatcgatc gggtggcatc gccgatcagc gtgacatgat cggtcacagc aacggttttt
     1441 accggagctg tcggttgtgg ctgtggctgt gcttgctgct gaatctgtac cgctgccgac
     1501 ggttcctgcg acgtcaactg tgtctgcgtc tgcgccgccg cgctggcggc aatcgccatt
     1561 gagaataacg cggcgaccca tcccgcagtc aaggcgctcg tcctgcacga ccctcgcctc
     1621 gtcagatatt catccatggt tcttcccctc accgtgcgac cagttgcggt tgtttgcccg
     1681 acatcgcgcc ggatggatcg aacgtctggg tcagaggcaa ttgcgcgttg agcagcgaat
     1741 cgaccgtctg cggcgcgcgg accataggaa cgcgcgcgtg ctcggttgtc gtcgccgcaa
     1801 catcggccgc ccgtgcgtgt gtggcttgtg tcgaggcccc cgcgatgcgc tgcgcatccg
     1861 cgcggatcgc ctgctgcact tccggcgaaa atctctgctg cgtgatcagc ccttgcgccg
     1921 cggcaggctg accgtcggcg agcaggaata gcgcgacatt gctcaggatc ttcgggttgt
     1981 cctgcgccaa ctccacggcc ttcatcagcg gtacgcgagc gcccgccaca tcgccaaggc
     2041 gcaaacgcgc gtaacccaga tccgacagcg tgagagcgtc agttggttgc aggcgcacgg
     2101 cagcatcgaa ctcttcggat gccttaccaa attctcctgc tgcgccagcc agcaacccga
     2161 gaccgcgata tccccgcgcc gccagcggcg tgttcagcaa tttcgtgtac gcgtcggcgc
     2221 tgccctgggc ctggccggtc tggcgcaacg cgtcggcacg caggagcgtg gtatcgggcg
     2281 tcgtgccgta ctgcttctca tatgcgtcaa tatgcgcaag cgacgcatag aacaaaccct
     2341 gcgactgcat ccggtcgatc agcgcgagat acatgccggg tgtatcgggc gcgtcctgct
     2401 tctgctgcga ttgctgaagc gcggcttcgc gctccgcctg tatgccgacg ccatacccac
     2461 tttccatctt cgacgcgcag ccgcccaggc ccgcgaaaac ggtacaggca agcatcagga
     2521 cgacagtggg ccggcggttc tcgattgcga tcaatttcat ggcgactctc ttcaacgtct
     2581 atctatgcat cgtggacagc gaatggtaga tggcaataaa ccccggaccg gctgtcatga
     2641 tcaacagtgc gggcagcaag gtcaccacca ttacgccggt catcttcacg gtcaatgcgc
     2701 cgatccgttc acgcaacgtc gcgcggcgcg actcgcgcaa ccggtcgccg aacaggcgca
     2761 gcggttcctg taccgcacca ccgtgcttgt cgacctggac caccagccgc atcacggcat
     2821 tcaggtcgtc gctttcatag ctcgtcgcga gccggctcag cgactgctca cgcgtgcgcc
     2881 cggtggtgaa ttgacggtgg gccagcgcga gttcctgcga gagaactggc agcaccgtcg
     2941 cgaagtcgtt gatcatcact tgcaggcact gatcgagcga caggccgacg ccctg
//
LOCUS       DATGBK010000679         3007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_77680, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000679 DATGBK010000000
VERSION     DATGBK010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77680"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(280..1311)
                     /locus_tag="VKJ77_09655"
     CDS             complement(280..1311)
                     /locus_tag="VKJ77_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC45576.1"
                     /translation="MSDPINTQRRRLLGTTVAGISLLELGLNVSANAQSNDAKPATRP
                     ASFDNIRQVNAGTLNVGYAEAGPQNGPVVILLHGWPYDIYSFADVTPLLVSAGYRVIV
                     PYLRGYGSTRFLSADTPRNGQQSVVALDIIALMDALKIDKAIFGGFDWGARTVNIIAA
                     LWPERCKAMVSVSGYLIGSPEANRAPLPPKAELAWWYQFYFATERGYAGYEANRHDFN
                     KLIWHTASPKWNFDDATFERSAASFNNPDHVAVVIHNYRWRLGLAKGEPQYDDLEKRL
                     ATAPLISVPTITMEGDANGAAHPDPSAYAKKFSGKYVHRNIGGGIGHNLPQEAPKAFA
                     DAVIDVARF"
     gene            complement(1415..2923)
                     /locus_tag="VKJ77_09660"
     CDS             complement(1415..2923)
                     /locus_tag="VKJ77_09660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011205738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M81 family metallopeptidase"
                     /protein_id="HMC45577.1"
                     /translation="MKILIAGFQHETNTFAPTKASYPSFIQGEGFPPLVRGADVLGLR
                     DVNVPIGGFIKAAQARGHDLLPVIWAGASASAHVSTDAFERIGGEIITAINEGEFDAI
                     YLDLHGAMVTEQHDDGEGEILERVRRIVGDRMPVVVSLDLHANVTARMFKHASALVAY
                     RTYPHVDMADTGERAALILEELVLQGRPLHCAVRRVPFLIPVNGMCTLVEPARGMYQL
                     LADLEEKPVVSASFAPGFPAADFPECGPTIWAYSFDEEAAERAADALFSKIVNEESRW
                     EVPFLTPDEAVLEAIRLSRSSDKPVIIADTQDNPGVGGDSNTMGMVRALLHNGATGAA
                     VGVIWDAQAAQAAHRAGVGARISLSLGGGSGVQGDSPLVAEFEVEYLSDGRFRFDGPM
                     LNGMQGELGPVACLRIEGVRIAVSSVKMQVFDRNLFRVAGIEPERMKILVNKSSVHFR
                     ADFEAIAEAILVAKAPGPMAADPADLPWKHLDPDIRMRPMGQSFKSFRAQSC"
BASE COUNT          635 a          900 c          877 g          595 t
ORIGIN      
        1 aacggttcgc gcggcgacct gacactgcaa ctagtgctca cgatgccggc tgcggtttca
       61 catctgaacg acaacgagcg acaaaggcta cgcgagatgt ttgcggacgc gcagcgtcgg
      121 gcaacgcagg aaattccgcc acgctcgtaa ggcaattatc ttatcgagtc gcaagcagcg
      181 gattgacaca tgtttgcgga gtcgaaggcc gtccgaaaaa atgaagctag ttgcttgcac
      241 caccctaggc atcgcgggtg gtgagtccgt agcggctgat cagaagcgag cgacatcaat
      301 gaccgcatcg gcgaacgctt tcggcgcttc ctgcggcaag ttatgaccga tgccaccgcc
      361 aatgttccga tgcacatact tgcccgagaa cttcttcgca taggcggacg gatcgggatg
      421 cgccgcaccg ttggcatcgc cttccatggt gatggtcgga accgagatca acggtgccgt
      481 tgccaggcgc ttttccagat cgtcgtattg cggctcgccc ttggccagcc ccagacgcca
      541 gcggtagtta tggatcacaa ccgcaacgtg gtccggatta ttgaacgacg cggcggagcg
      601 ctcgaaggtg gcatcgtcga aattccattt cggtgatgcg gtatgccaga tcagtttgtt
      661 gaagtcgtgg cgattcgctt cataacctgc atagccgcgc tcggttgcga aatagaactg
      721 ataccaccac gcgagctcgg ctttcggcgg tagcggcgcg cggttggctt ccggactgcc
      781 gatcaggtag ccgctgacag agaccatggc cttgcatcgc tcgggccaca acgcggcgat
      841 aatgttcacc gttcgcgcac cccagtcgaa gccgccgaag attgccttat cgattttcaa
      901 cgcgtccatc aacgcaatga tgtcgagggc gacgaccgac tgctggccgt tgcgtggagt
      961 atcggcggag aggaatcgcg ttgaaccata acctcgcaga tacggaacga tgacccgata
     1021 gcccgccgat acgagcaatg gtgtcacatc cgcgaagctg tagatatcgt agggccatcc
     1081 gtgcagcagg atcacgaccg gtccattctg cgggccggct tccgcatagc cgacgttgag
     1141 ggtaccggcg ttgacctgac gaatgttgtc gaacgaagca ggacgggtcg ccggcttagc
     1201 gtcgttcgac tgggcgttgg cggatacgtt caaaccgagt tccaacaaac tgataccggc
     1261 aacggtcgtg ccaagcaggc gacgacgttg agtattaatc gggtccgaca tagctgattc
     1321 tccttgaaga tgggcacgca agagcgctgc cggattcggc acgcgcttga tgagttaaaa
     1381 atgttcgggt cggtctgacg cagcggcgaa gcgctcagca ggattgcgca cgaaaggatt
     1441 tgaacgactg acccatcggt cgcatgcgga tgtctggatc gaggtgcttc cacggaaggt
     1501 ccgccggatc cgcggccatg ggacccggtg cttttgccac gagaattgcc tcggcgatgg
     1561 cctcgaagtc cgctcggaag tgaactgagc tcttgttcac gaggatcttc atccgttcgg
     1621 gttcaatgcc cgccacgcgg aacaggtttc gatcgaatac ctgcatcttg acggagctca
     1681 ctgcaatcct gacgccttcg atgcgcaaac aggcgaccgg tcccaactcg ccctgcatac
     1741 cattgagcat tggtccatcg aagcggaagc gtccgtccga caaatactcg acttcgaact
     1801 cggccacgag cggcgaatcg ccttgcacac ccgaaccgcc gcccagcgac agcgaaatgc
     1861 gtgcacccac accggcgcga tgcgccgctt gcgctgcctg cgcatcccag atcactccca
     1921 cagccgcgcc ggtcgcgccg ttgtgcaaga gcgcgcgcac catgcccatg gtgttggaat
     1981 cgccgcctac gcccgggttg tcctgcgtgt ccgcaatgat gacgggcttg tcggaactcc
     2041 tgctcaatcg gatcgcctcg agcacggctt cgtccggcgt caggaacggc acctcccagc
     2101 gcgattcttc gttcacaatt ttcgaaaaga gcgcgtcggc cgcgcgctcg gcggcttctt
     2161 cgtcaaacga ataagcccag atagtcggac cgcactcagg aaaatcggca gccggaaatc
     2221 ccggtgcaaa cgacgcggac acgacaggct tttcttcgag gtccgccagc aactgataca
     2281 tcccgcgcgc aggttcgact agcgtacaca tgccgttcac gggaataaga aacggcacac
     2341 gacgaaccgc acaatgcaac gggcgccctt gcaataccag ttcttcgaga atcagcgcag
     2401 cacgttcgcc ggtgtcggcc atatcgacgt gaggataggt cctgtaggcc acgagcgcac
     2461 tggcatgctt gaacatgcgc gcggtgacgt tggcatgaag atccagcgag acgacgaccg
     2521 gcatgcgatc gccgacaatc cggcgcacgc gttcgagaat ctcgccttcg ccgtcatcgt
     2581 gctgctcggt caccatcgcg ccgtgcaggt cgagatagat cgcgtcgaac tcgccttcgt
     2641 tgatggcagt gatgatctcc ccgccgatcc gctcgaacgc gtctgtgctc acgtgcgccg
     2701 atgcacttgc gcccgcccag atcactggta gcaggtcgtg cccccgcgct tgtgccgcct
     2761 tgatgaatcc gccgattggg acgttgacgt cgcgaagccc aagcacatcg gcgcctcgca
     2821 ccagcggtgg aaaaccttct ccttgaatga aactcggata agacgccttg gtcggcgcga
     2881 aggtattggt ttcatgctgg aaaccagcga tcaatatttt catgggtttc acctgttact
     2941 tgaatttcgt tatgccgcgc gagaaaatga tatggatacc tacgttttgt ctacccatgc
     3001 ataaatc
//
LOCUS       DATGBK010000680         2511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_31986, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000680 DATGBK010000000
VERSION     DATGBK010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31986"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..162
                     /locus_tag="VKJ77_09665"
     CDS             <1..162
                     /locus_tag="VKJ77_09665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin-like C-terminal cupin domain-containing
                     protein"
                     /protein_id="HMC45578.1"
                     /translation="GPRFIEWNFVSSSKEKIEAAKLAWSEQRMGHVPGETEFIPLPPP
                     RRQANPPEA"
     gene            303..1151
                     /gene="trxA"
                     /locus_tag="VKJ77_09670"
     CDS             303..1151
                     /gene="trxA"
                     /locus_tag="VKJ77_09670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HMC45579.1"
                     /translation="MDTTLATFEQDVIAASTLAPVLVDFWAPWCGPCKTLGPMLERLE
                     AEGAGKWKLVKVNVDENPELAQHFQVRSIPHVVAFADGHAVDQFIGVLPEGQLREFID
                     KLVPDGAEAERRAAHAAYEAGDTDLAIDHIKATLALDPGYDDARLDLIEWLLAAGRTD
                     EAHDEDKLLSPKTTQGIDDRYNALKTELDAADAAESLPPADALIAAVNANPDDLEARF
                     ALANRLIAGRDYNGALEHLFAIVTRDRKFMDDVGRKTMLSVFGLATHQPEVVSQWRRK
                     LSAAIN"
     gene            complement(1265..2125)
                     /locus_tag="VKJ77_09675"
     CDS             complement(1265..2125)
                     /locus_tag="VKJ77_09675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HMC45580.1"
                     /translation="MTAFPASADTLNLTSATPEFEAADRARRFGGVARLYGPAGLAAF
                     ERAHVAVIGIGGVGSWTVEALARNAIGRLTLIDLDNVAESNTNRQVHALDGNYGKAKV
                     SAMAERIHLIDPSCRVEQVEDFIEPANFDSVLGGGFDFVIDAIDSVRTKTALIAWCVE
                     HGQPLITVGGAGGQLDPTRIRIDDLALTIQDPLLSKVRGQLRKLHGFPRGPKAKFKVS
                     AVYSDEPLIYPEAPALDASEVTGSEETAPATVGPVGLNCAGFGSSVCVTASFGFAAAA
                     YVLRDIAKRA"
BASE COUNT          575 a          732 c          731 g          473 t
ORIGIN      
        1 ggcccgcgct tcatcgagtg gaatttcgtc tcgagttcga aggaaaagat cgaggccgca
       61 aaactcgcgt ggagcgaaca gcggatgggg catgtgcccg gcgaaaccga gttcatcccg
      121 ttgccaccgc ctcgccgaca agccaatccg cctgaggcct gaggcctgag gctgatgagg
      181 ctcagggctt gaggcccagg cccgccgctg aatcgggcat gcacccggtt gaactcggcc
      241 ggcttgcccc aagataactg tttatcgaat tgttcaacgt ttaagcgttc tggaggaaca
      301 ccatggatac aacactcgcc acgttcgaac aggacgtcat cgccgcgtcc acgcttgcgc
      361 cggtgctcgt cgatttctgg gcgccgtggt gcggtccgtg caagacgctc ggcccaatgc
      421 tcgagcggct ggaagcggaa ggcgcgggca agtggaagct ggtgaaggtg aatgtcgatg
      481 aaaatccgga gttggcgcag cactttcagg tacgcagcat tccgcacgtg gtcgcgtttg
      541 cggacggcca tgccgtcgac cagttcatcg gcgtgctgcc ggaaggccag ttgcgcgaat
      601 tcatcgacaa actcgtgccc gatggtgctg aagccgagcg gcgtgccgcg catgcggcct
      661 acgaggccgg cgacaccgat ctggccattg accacatcaa ggcgacactg gcacttgatc
      721 ccggttatga cgacgcgcgg ctggacctga tcgaatggct gttagccgcg ggccgcacgg
      781 acgaagcaca cgatgaagac aagctgctgt cgccgaagac cacgcaggga atcgacgacc
      841 gctacaacgc gctaaagacg gagctggacg ccgccgatgc cgccgagagc cttccacccg
      901 ccgacgccct gatcgccgct gtgaacgcca atccagacga tctggaagcc cgtttcgcgt
      961 tggccaaccg gctgattgcc ggccgcgact acaacggtgc gctggagcat ctgttcgcga
     1021 tcgtgacacg cgaccgcaaa ttcatggacg acgtgggccg caaaaccatg ctgtcggtgt
     1081 tcggcctggc cacgcatcag ccggaagtgg tttcgcaatg gcgccgcaaa ttgagcgcag
     1141 caattaactg acgcattaaa tgctcggagc caaaaccttt caaatagttt aaatcgatat
     1201 tggcgagaaa tgcattttga aaaatggccg cttgaaagcg gccattttct aacctgcgcg
     1261 acgtttaagc gcgtttcgcg atatctctta agacatacgc ggcagcggca aatccgaaac
     1321 tggctgtcac gcagacactc gatccaaacc ccgcgcaatt cagccccacg ggtcccacag
     1381 tggcgggcgc tgtttcttct gatccggtca cctcgctggc gtcgagagcg ggtgcttcgg
     1441 ggtagatcag cggttcgtca gaatagaccg cgctcacctt gaacttcgct tttggtccgc
     1501 gcggaaagcc gtgcaatttg cgcagttgcc cgcgcacttt cgagagcaac gggtcctgga
     1561 tcgtgagcgc cagatcgtca atacgaatcc gtgttggatc aagttgccca cccgctccgc
     1621 cgacggtgat caatggctgt ccatgctcga cacaccacgc aattagcgcg gttttcgtac
     1681 gcacgctgtc gattgcatcg atcacgaaat cgaaaccgcc gcccagcacc gaatcgaaat
     1741 tcgcgggctc gataaaatct tcgacctgct ctacgcggca cgacggatcg atcaggtgaa
     1801 tccgctcggc catagcgctg accttggcct tgccgtagtt gccatcgagc gcgtgcacct
     1861 ggcggttcgt attgctttcg gccacgttgt cgagatcgat cagcgtcagg cgcccgatcg
     1921 cattgcgcgc cagcgcttcg accgtccacg agcccacgcc gccaatcccg atcacggcca
     1981 catgcgcgcg ttcgaacgcc gcgagcccgg ccggaccata caagcgcgcc acgccgccaa
     2041 agcgccgggc gcggtcggcg gcttcaaact ccggcgtggc ggaggtaaga tttaaagtgt
     2101 cggcggaggc aggaaaagcg gtcatgatga ggtgggcagc gggtcggcaa aacaagcaaa
     2161 aacaaagcaa gaaggcatca agaaagcatg acaacagtgc ctcgcggcac cggtccgcac
     2221 tgacgctcta tcgcaacgat agaaccggag atcagcagga attcgctgaa ttgcgtattc
     2281 tgccttatcg aagattggac gtaagaaatc atcggccagt tttttgaaag caaaatgaaa
     2341 ataactgccg aattgcatca aattctgtcg cccgggaaca tgatctaaat cattgaagat
     2401 caaagggaca ttggcggtaa agcgcagaat ttgaagacct tggctatact aatacgattg
     2461 aagcgtttgc ataaaaaatg acgaccctcg ccgatcttag aaagaattat t
//
LOCUS       DATGBK010000681         3512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_146992, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000681 DATGBK010000000
VERSION     DATGBK010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146992"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..660)
                     /locus_tag="VKJ77_09680"
     CDS             complement(10..660)
                     /locus_tag="VKJ77_09680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HMC45581.1"
                     /translation="MSASPSIDPRQPYFFFDFNSPFSYLLLEQHEKWPNMPFEVLPID
                     YLQLLKHWGQPMPGSIPPKRVFMYRYALFRAEQLGIPFKMPPSHPFDSAKALRLAVAS
                     GGEIGCIREIFRFIWKEGRDPSTEQGFDDLCRHVGLPDGAKMIGLEDVTATLKANVER
                     AVELGVFGVPTFVVNGQLFWGEDTLPMVLYVARSPNWLEGAEVQRISNLPRTAPAV"
     gene            complement(731..2086)
                     /locus_tag="VKJ77_09685"
     CDS             complement(731..2086)
                     /locus_tag="VKJ77_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HMC45582.1"
                     /translation="MARFVAISWRDLAISFGPILLISAAAIYLAVRLIQPAPPSTLTM
                     SAGTKGSSFWNDAQQYKKILARNGVTLKVLESQGSLDNLQKLEDPKANVDVGFVQGGM
                     SAPGAPDKHENLVSLGSVAYVPLAVFYRGPLLTRLSELKGKRLAISTEGSGTRALALA
                     VLKANGIEPGGDTELLPLSGDAAASALTDGSIDAAFLTGDSAQPPTMGKLFRTPGMRF
                     FDFSQADAYARRFPYLKVIVLPMGALDLAKNVPPHPIHLIAPTAELIARDGLHPALSD
                     LLIEAAKEVHGRANLLQTANEFPAPLQHEFHISDDAERYYKSGKSFLYRTLPFWIASL
                     ADRVIVLLVPIIVVLIPGLRLVPGLYRWRVKSRIYKIYGALIGIEREAMSDPEPAQRE
                     ALIERVDGIENTVNQMKMPLAYADQFYVLREHIGFVRQRLTVAQAAALDAQGDSVQHT
                     T"
     gene            2929..3288
                     /locus_tag="VKJ77_09690"
     CDS             2929..3288
                     /locus_tag="VKJ77_09690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HMC45583.1"
                     /translation="MKVVDMLKALSVVVCVAVASSAYAQSSDAMATTDAAPSAKTTKK
                     VNRKLGLDVRRALSKAQGIDVSNIFVRARAGAVVLTGTVPDGAQIPKAEEVAKGVSGV
                     TSVSNKLTLAVPNGGGG"
BASE COUNT          705 a         1003 c         1074 g          730 t
ORIGIN      
        1 cgcgccgctt cacacggccg gcgcggtccg cggcaaattg ctgattcgct gcacttccgc
       61 gccttccagc cagttcggcg aacgggcgac gtacagcacc atcggcagcg tgtcttcgcc
      121 ccagaacaat tgtccgttca ccacgaaagt tggcacgccg aatacgccga gctccaccgc
      181 ccgctcgaca ttcgccttca gcgttgccgt gacgtcctcg agtccgatca tcttcgcgcc
      241 gtcgggcaga cccacatggc ggcagagatc gtcgaatccc tgctcggtcg acggatcgcg
      301 gccttccttc cagatgaacc ggaaaatttc gcggatacag ccgatttccc cgcccgaagc
      361 cacggcaagg cgcagcgctt tggcggaatc gaagggatgc gacgggggca ttttgaacgg
      421 aatacccagt tgttcggcgc gaaagagcgc gtatcgatac ataaacacgc gcttcggtgg
      481 aatgctgccc ggcatcggct ggccccagtg cttgaggagc tgcaaatagt cgatcggcaa
      541 cacttcgaac ggcatgttcg gccacttttc atgctgttcg agcagcagat acgaaaaggg
      601 agagttgaaa tcgaaaaaaa agtacggctg gcgcggatcg atggaaggcg aggcgctcat
      661 atgaatctcc ctggtgcatt gctcgtcgcg gtagccgtca ctccggttac cgttgtttct
      721 tctttcgata ttacgtggtg tgctgaacgc tgtctccctg agcgtcgagt gcggcggcct
      781 gcgcgacggt cagccgctgg cgcacaaagc cgatatgctc gcgcagcacg tagaactggt
      841 cagcgtaggc gagcggcatt ttcatctggt tgaccgtgtt ctcgatgccg tccacccgct
      901 cgatcagcgc ctcgcgttga gccggttcag ggtcactcat cgcctcgcgt tcaattccga
      961 tcagcgcgcc gtagatcttg tagatccgtg atttcacccg ccaccggtac agccccggca
     1021 cgagccgcaa acccggaatc agcaccacga tgatcggcac cagcagcacg atcacgcgat
     1081 cggcaagact cgcgatccag aacggcagag tccggtacag gaagctttta cccgacttgt
     1141 agtagcgctc ggcgtcgtcg ctgatatgga actcgtgctg gagcggcgca gggaattcgt
     1201 tggccgtctg caacaggttc gcgcgtccgt gcacttcttt cgcggcttcg atcagcaggt
     1261 cggacagcgc aggatgcaga ccgtcgcggg cgatcagctc ggctgtcggc gctatcaggt
     1321 gaatgggatg cggcggcacg ttcttcgcca gatcgagggc gcccatcggc aggacgatca
     1381 ccttcaggta cggaaagcgc cgcgcgtagg catcggcctg gctgaaatcg aagaaacgca
     1441 tgccgggcgt gcgaaatagc ttgcccatgg tcggcggctg cgcggaatcg ccggtgagaa
     1501 acgcagcgtc aatactcccg tccgtcagcg cgctggccgc ggcgtcaccg ctcaatggca
     1561 gcaattcggt gtctcctccc ggctcgatgc cattcgcctt cagcaccgcc agcgcgagcg
     1621 cgcgcgtgcc gctgccttcg gtgctgatgg cgagccgctt gcctttcaat tccgaaagcc
     1681 tcgtcagcag cggtccacga taaaacaccg ccagtggcac atacgccacg ctgccgagtg
     1741 agaccaaatt ttcgtgcttg tccggcgcgc cgggcgccga catgccgccc tgcacgaaac
     1801 cgacgtcgac gttcgccttc ggatcttcga gcttttggag gttatcgagc gaaccctgcg
     1861 actccagcac cttcagcgtg acgccgttgc gcgcaagaat ctttttgtat tgttgcgcgt
     1921 cgttccagaa cgaactgccc ttggttcccg ccgacatcgt cagcgtactg ggcggcgctg
     1981 gctggatcag tcgcacggcg agatagatcg cggcggcgct gatcagcagg atgggtccga
     2041 acgatatcgc gaggtcgcgc catgagattg cgacgaaacg cgccatggcc ggcgcgcgcc
     2101 gggtgcgggg tttcttcggg gattcctgaa cgggaggttc ttggccggga gtttgagtca
     2161 ttgtcgggtt cggtgggacg gggacctgcg ttgacgcaaa gccgttaaag cagcggattc
     2221 tataaacggg agcggaaagg agaaaggtaa aggtaatggt aatggtaaag ataaagggaa
     2281 aaccctcgca tccactaaac agcacgcgat ggtcaaaata ccctgccgct ctacgcgtta
     2341 agccttttat tcagtcgcgg tagtgaaata tgcctgtgct aatacgttga aacgtcagct
     2401 gatatattca ttgcccacgc tctgttgcaa ttttcgccga tggtacatga tcgcccgtgc
     2461 ggttggatca cgggcacgcc ctaagccgat atggcaatat ggataagtac ggtcgagtgc
     2521 gtgcttcatc gtgttaaatg ctttgcgctt ctcgcgaggc tggattaaat tgacgttcgc
     2581 cgccgtataa ccagcatccg cgccgccaaa ccggcattcg gagcgttgct ccgagcagaa
     2641 ccggccgcgt cgtacgatgt gcagcagctt ttgtccttgt ttttgtcctt gtgccagcgg
     2701 tcatgacacc cgtataagaa cggccggaca tttgtttttt cgccagtctc tcgcaacacc
     2761 gtgtcgccag catcggcggt ctgtttgtat cgtatgtgcg tcgatcgttt gctcgtcggt
     2821 ggtacacaga ccgcaagatg tcgtagccga gccgctgggt tgatgcggtc caaaagaagc
     2881 actagagcaa cactttgcga agtccaaagc gaaacaaaag gagaagtcat gaaagtagtc
     2941 gatatgttga aggcgctgag cgtcgtggtg tgcgtcgcag tggcgtcgag cgcctatgct
     3001 caatcaagtg atgccatggc cacgactgac gcagctccgt cggccaagac caccaagaag
     3061 gtcaaccgca agctcggtct cgatgtgcgc cgtgcattga gtaaggcaca gggcatcgac
     3121 gtgtcgaaca tcttcgtacg cgcacgtgcc ggtgcagtcg tgctgacggg tacggtgcct
     3181 gacggcgcgc agattccgaa ggccgaggaa gtggcgaagg gcgtgagcgg tgtgacctcc
     3241 gtgtcgaaca agctcacgct ggctgtaccg aacggtggtg gaggctgata tttccctgag
     3301 ccctggactg cggcgcgtcg ttgcagtgtt tttgcagcgt gcgacgtggt tttgtccagt
     3361 ggtttaaata acgggttccg gtgcttcgca ccggaacccg ttatgcgtta tgggctcgag
     3421 cttcctggtt gagagcagga gcgggctgct tgcttgcatc gaatcgaaag atgtacgccg
     3481 gataaaaaca acgtactgga gagcgacgat ga
//
LOCUS       DATGBK010000682         1914 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286321, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000682 DATGBK010000000
VERSION     DATGBK010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286321"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1062)
                     /locus_tag="VKJ77_09695"
     CDS             complement(<1..1062)
                     /locus_tag="VKJ77_09695"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC45584.1"
                     /translation="MQRSEDNVSNQQSGLDIITDPDAFLALRDEWNALWSKADGRHHQ
                     AFDICWLCWTQVAKQRGRRLHCIVYRENGELVLVWPLVSHRRFACTVLEPLTPGTAEH
                     TTILTANGSIAALDAAWRAATQHCRADIFSIPYVAKAAGLYDLASRHAGLVAARQDVS
                     ATALLRKEPDWTAYCNTLGTLSKKKPGARERRFEKEGVLEIRTLDAKDTYAHAQWVDW
                     MLARKREWAEHFEKSGPWLYSQGYRDFLVSLADGTHAQPMATVFVMTLDGVPVAAHIM
                     GSGHTCVNGLIGAFDSKFSRFAPGSILIERSVKWAWENRMDLDFGIGTEEFKGYWSRG
                     NVLPNTSFQIATTQWGKLAF"
     gene            1648..>1914
                     /locus_tag="VKJ77_09700"
     CDS             1648..>1914
                     /locus_tag="VKJ77_09700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010101631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45585.1"
                     /translation="MNTHCACFVRPALAAMCVASLATLVACGGNSCIGLGVCGGGNGV
                     PNEVPNIAISGTAATGSALASATVRFSCAQGSGSALSDGGGHYAI"
BASE COUNT          356 a          569 c          589 g          400 t
ORIGIN      
        1 aaacgccaat tttccccact gcgtggtagc aatctgaaag ctggtgttcg gcagtacatt
       61 gccccggctc cagtacccct tgaattcttc tgtgccgatg ccgaagtcga gatccattcg
      121 attttcccat gcccacttga cgctgcgctc tatcaagatc gacccggggg caaacctgga
      181 aaatttcgag tcgaaggccc cgatcaggcc gttcacgcac gtatgccccg agcccatgat
      241 gtgcgcggcg acaggcacgc cgtcaagcgt catcacgaag actgttgcca tcggctgcgc
      301 gtgcgtgccg tcggcgagac tgaccagaaa gtcccgataa ccctgcgaat aaagccaggg
      361 cccgctcttt tcgaagtgtt ctgcccattc gcgtttgcgt gcgagcatcc agtccaccca
      421 ttgggcgtgc gcgtacgtat ccttagcgtc gagagtgcgg atttccagga caccttcctt
      481 ttcgaaacgt ctctcacgcg cgccaggctt cttcttcgac aacgtgccga gcgtgttgca
      541 gtaagccgtc cagtccggct ccttacgcag tagcgccgtc gcggagacat cctgcctcgc
      601 tgcgacgagg cccgcgtgtc gcgaggcgag gtcgtaaagg ccggcggcct tcgcaacata
      661 cggaatagag aagatatcgg cgcggcaatg ctgagtcgcg gctcgccagg ctgcatcgag
      721 cgctgcgatt gagccattgg ccgtgaggat ggtcgtgtgt tcagcggtac cgggcgtaag
      781 tggttcgagg acagtgcagg cgaaccgccg gtggcttaca agcggccaga cgagcacgag
      841 ttcaccgttc tcccgataca cgatgcaatg gagccggcga ccgcgctgct tcgccacctg
      901 agtccagcac agccagcaga tgtcgaaagc ttggtgatgg cgtccatcgg ctttcgacca
      961 gagcgcattc cattcgtctc gaagcgcgag gaaagcgtcg ggatcagtga tgatatcgag
     1021 gccggattgc tgattgctca cgttgtcttc agatcgctgc atggcgttgc tcaggctggt
     1081 ttcaagtggg cggtctcgcc gctgtcctcg cggtgtcgct cgacgcgctt cggcgtgcgg
     1141 gatggcgggc ccggattcgc ggtttgccac actttgaggc ttgaggcagg tagcgtcggt
     1201 gcggtggtca acacactttt ccgtgcggtc ggctgatgcc ggtatcagcg ccgttgcaag
     1261 gtccacgaag tgtcgaaccc gacgatgaac aatcgggtga agctatgtcc gcaacggcag
     1321 gatggcttgc cgatcaatgt cattgcgcga atgacctgtg agccttgaaa gctgccgtcg
     1381 agacagctcc gggtcgaacc gttgcgacgg gtcgacttcc gccgatagtg gttcgcttcc
     1441 gagaatttcg aataccgctt gggccgactc acagccacat cttccgcctg tcggcctgtc
     1501 gacaaacgcc cgttcaacag cccataacac agcgaatgtg attgaggtgg caactatctc
     1561 ggggtatcgg ggctaaaatc gaacgtagcg ccagtccttt tgcgcggaac tgatcgtcct
     1621 atccgaatct atcgacggca ggcaaccatg aacactcact gtgcgtgttt cgttcgcccg
     1681 gcgctagctg cgatgtgcgt ggcttcgctc gcaacgctcg tggcgtgcgg cggaaactcc
     1741 tgcatcggcc tcggcgtctg tggcggcgga aatggggtgc cgaacgaggt gccaaacatc
     1801 gccatatccg gcacggccgc taccggcagt gcgctcgcca gcgcgacggt cagattcagt
     1861 tgcgcgcagg gttcgggctc cgccttgtcg gacggtggtg gacactatgc gatc
//
LOCUS       DATGBK010000683         2220 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_170577, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000683 DATGBK010000000
VERSION     DATGBK010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170577"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..986
                     /locus_tag="VKJ77_09705"
     CDS             <1..986
                     /locus_tag="VKJ77_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC45586.1"
                     /translation="WVAAAMLATLAEAASAELLITELGAASLERWPGFIADMPEPVFF
                     QRNGTLVVWHAGDRAEAPLFERRLRANAPSELFQNGFVKLSGAQVAAAEPSLGTRFPQ
                     GWLLPNEGQLDNRQVLSALAAGLAERNVDLHWNTTIDTPPDARFVIDCRGLGGKPAWP
                     ALRGIRGEVARVHAPGIGLTRPVRLLHPRYPLYIAPKQDDLYVIGATEVEGEDMSPMT
                     VRSALELLSAAFAVHPGFGEARILELNSQCRPTLPDHRPAIVWDGARTLRVNGLYRHG
                     YMIAPEVADSARALAEALLGGAITDPDSFDDWRRQARWSALLRCEHAAPVL"
     gene            995..1192
                     /gene="thiS"
                     /locus_tag="VKJ77_09710"
     CDS             995..1192
                     /gene="thiS"
                     /locus_tag="VKJ77_09710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006755422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HMC45587.1"
                     /translation="MNIHINQQPFSVPDAATVTDALAAFGAKPPFAVALNGQFVARGE
                     HASKALAAGDKLDIVSPVAGG"
     gene            1225..2037
                     /locus_tag="VKJ77_09715"
     CDS             1225..2037
                     /locus_tag="VKJ77_09715"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HMC45588.1"
                     /translation="MTSTITTADTLTLYGTSFPSRVLLGTSRYPSLQSLSDSIDAARP
                     GMVTVALRRQSNTGEAGFFDVLKRHGVALLPNTAGCQTVDEVLTTARMARELFDTPWL
                     KLELIGDDYTLQPDPIGLVEAAEILIREGFKVLPYCTEDLVIGRRLLDVGCEALMPWG
                     APIGTGKGVTNPYGLRTLRERLPDVPLIVDAGLGVPSHACQVMEWGFDGVLLNTAVSQ
                     ATFPPQMARAFALGVEAGRMAYLAGPMAERDSAQASTPVVGMPFWHQDGSAA"
     gene            2034..>2220
                     /locus_tag="VKJ77_09720"
     CDS             2034..>2220
                     /locus_tag="VKJ77_09720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HMC45589.1"
                     /translation="MSMVLLDKEVFWPPADELLEAAERIRARLGVWPPTHAPWRICLT
                     APDDTNGGDLIIVADAQQ"
BASE COUNT          366 a          703 c          734 g          417 t
ORIGIN      
        1 catgggtcgc ggcagcaatg ctcgcgacgc tagccgaggc cgccagcgct gaattgctga
       61 tcactgaact cggtgcggcg tcgcttgagc gctggccggg gtttatcgcc gatatgccgg
      121 aaccagtgtt tttccagcgc aatggcacgc tggtcgtctg gcatgccggc gaccgcgctg
      181 aagcgccgct gttcgagcga cgtttgcgcg cgaacgcgcc ttcggagctc tttcagaacg
      241 gcttcgtcaa actctccggc gcgcaagtcg cggcggcgga gccgtcgctc ggcacgcgtt
      301 ttccgcaagg ctggctgctg ccgaacgaag gccagctcga caatcggcaa gtgctgagcg
      361 cgctagcggc ggggctggcc gaacgtaacg ttgatcttca ctggaatacg acaatcgata
      421 ccccgccgga cgcgcgtttt gttatcgatt gccgggggct cggcggcaaa ccggcatggc
      481 cggcgttaag aggcattcgc ggcgaagtag cgcgcgtgca tgcgccgggt atcggcctga
      541 cgcggccggt gcgcttgctg catccgcgtt atccgcttta tatcgcgccg aaacaggacg
      601 acctttacgt gattggcgca accgaagtcg aaggcgaaga catgtcgccg atgaccgtgc
      661 gctcggcgct agaactcctg agcgcggcgt tcgcggtgca tccgggtttc ggcgaggcgc
      721 gcattctcga actcaattcg caatgccggc cgaccttgcc cgaccatcgt ccggcgattg
      781 tctgggacgg cgcacgaacc ttgcgggtaa atgggctgta tcgacacggt tatatgatcg
      841 cgcccgaagt cgccgactcc gcccgtgcgc ttgccgaagc gctgctcggc ggcgcgatca
      901 ccgacccgga ttccttcgac gactggcgcc gccaagcccg ctggtccgcc ttgctgcgct
      961 gcgaacacgc ggcgcctgtg ctttgacttt catcatgaac attcacatca atcagcagcc
     1021 tttctccgtg cccgacgcag cgaccgtcac cgacgccctc gcggccttcg gcgcaaaacc
     1081 gccgttcgcc gtggcgctga acgggcaatt tgtcgcgcgt ggcgaacacg catcgaaggc
     1141 gctcgccgcc ggcgacaaac tcgacatcgt ctcgccggtc gccggcggct gagtgaacct
     1201 gactggacta caaggaatcg aatcatgact tccaccatca ccacagccga taccctcacg
     1261 ctctacggca cgtcgttccc gagccgggtg ctgctgggga cctcgcgcta tccgtcgctg
     1321 caatcgctgt cggattccat cgatgccgct cgtcccggca tggtcaccgt tgcgttgcgg
     1381 cgccagtcga acacgggcga agcgggtttc ttcgatgtcc tcaagcgtca cggcgttgcg
     1441 ttgctgccga acacggccgg ttgccagacc gtggacgaag tgctgaccac ggcgcggatg
     1501 gcgcgtgaac tcttcgatac cccgtggctg aagctcgaac tgatcggcga tgactacacg
     1561 ctgcagcccg atccgatcgg cctcgtggaa gctgctgaaa tcctgatccg cgaaggtttc
     1621 aaggtgctgc cgtattgcac ggaggatctg gtgatcggac ggcgtctgct cgatgtcggc
     1681 tgcgaggcgt tgatgccgtg gggcgcgcct atcggaacgg ggaaaggggt gacgaacccc
     1741 tacggattgc gcacgctgcg tgagcggctg ccggatgtgc cgcttatcgt cgacgcgggt
     1801 cttggcgtgc cgtcgcatgc gtgccaggtg atggagtggg gtttcgacgg cgtgttgctg
     1861 aacacggccg tctcacaggc gacgtttccg ccgcagatgg cgcgcgcgtt tgcgctgggc
     1921 gtcgaggcgg ggcggatggc gtatctcgcc gggccgatgg ccgaacggga tagcgcacaa
     1981 gcgagcacgc cggtggtcgg catgccgttc tggcatcaag acgggagtgc tgcatgagta
     2041 tggtgttgct ggataaggaa gtattttggc cccccgccga tgaactgctg gaagccgccg
     2101 agcgcatccg cgcgcggcta ggcgtttggc cgcctaccca cgcgccctgg cgtatttgcc
     2161 tgaccgcgcc ggacgacacc aacggcggcg acctgattat cgtcgccgac gcccagcagc
//
LOCUS       DATGBK010000684         3079 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147024, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000684 DATGBK010000000
VERSION     DATGBK010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3079
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147024"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..624)
                     /gene="cysT"
                     /locus_tag="VKJ77_09725"
     CDS             complement(<1..624)
                     /gene="cysT"
                     /locus_tag="VKJ77_09725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HMC45590.1"
                     /translation="MTTFTFRKPSALPGFGLTLGITVAYLSLVVLIPLAATFAKTATL
                     DWATFVRAVTSPRVLASYRLTFTAALGGALINAVFGFLVAWVLVRYTFPFKRVVDAVV
                     DLPFALPTSVAGIALAAVYAPNGWIGQFLAPLGIKVAFTPLGVLVALTFIGLPFVVRT
                     VQPVLEDFEREQEEAAACLGATRWLTFRRVVLPSLFPAILTGFALAFA"
     gene            complement(804..1853)
                     /locus_tag="VKJ77_09730"
     CDS             complement(804..1853)
                     /locus_tag="VKJ77_09730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006759460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC45591.1"
                     /translation="MLSRNSGWGARARKLFATAVIGAVSATGMTAGMIAQAHADTSFL
                     NVSYDPTRELYQEFNQAFGKKWKAETGETVTFKQSHGGSGGQARSVLDGLQADVVTLA
                     LAYDIDALAAKGLVAQDWQKRLPDNASPYTSTIVFLVRKGNPKQIKDWPDLLKPGVSI
                     VTPNPKTSGGARWNYLAAWTYAEHLPGGNATTAKDFVTKLYKNAGVLDSGARGATTSF
                     VQRGQGDVLIAWENEAFLSLKEFGSDKFEIVVPSVSILAEPPVAVVDKVVDRHGTRKL
                     AEAYLKYLYSEEGQEIAARNFYRPRSTAVPAALTKQFPKIKLYTIDDSFGGWTKAQKT
                     HFADGGVFDSIYQPQ"
     gene            2148..2798
                     /gene="lexA"
                     /locus_tag="VKJ77_09735"
     CDS             2148..2798
                     /gene="lexA"
                     /locus_tag="VKJ77_09735"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006400150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HMC45592.1"
                     /translation="MSKLTARQQEVFELIQRAIERTGFPPTRAEIAAELGFSSANSAE
                     EHLRALARKGVIELAAGSSRGIRLLTNGGLDDGPHQFTLPHASIMQLPLVGRVAAGSP
                     ILAQEHISQHYACDPALFSSKPDYLLKVRGLSMRDAGIFDGDLLAVQKKNEAKDGQIV
                     VARIGDDVTVKRWKRRPDGVELIAENPDYENIFVASGSDDFALEGIAVGLIRSGEL"
BASE COUNT          626 a          941 c          881 g          631 t
ORIGIN      
        1 cgcgaacgcg agcgcgaaac cggtcaagat cgcgggaaac agtgacggca gcaccacgcg
       61 gcgaaacgtc agccagcgcg tggcgcccag gcacgcggcc gcttcttcct gctcgcgctc
      121 gaaatcttcc agcacgggct gcacggtgcg caccacgaac ggcaagccga taaacgtcaa
      181 cgccacgagc acgcccaacg gcgtgaacgc caccttgatc ccaagcggtg cgagaaactg
      241 gccgatccag ccattcggcg catacaccgc ggcgagcgcg atgcccgcaa cggaagtcgg
      301 caacgcaaac ggcaaatcga cgacggcatc caccacgcgc ttgaacggga acgtgtagcg
      361 cacgagcacc cacgccacga ggaaaccaaa cacggcgttg atcagcgcgc caccgagggc
      421 agcagtaaac gtcagccgat acgacgccag cacgcgcggc gacgtgaccg cgcgcacgaa
      481 cgttgcccag tcaagggtgg ccgtcttggc gaaggtcgcg gcgagcggaa tcagcaccac
      541 gaggctcaaa tacgccaccg tgatgccaag tgtcaggccg aagcccggca gtgcgctggg
      601 cttgcggaaa gtgaaagtcg tcatgcgtga atcatccagt tccggcgcgc cgcggggacg
      661 gcgcttcggg gtcgagcttc gggttggttt catggccgtc tatgcggccg tagtgttatt
      721 tcaggcttct ttacgactac agcatcgcga gcgcataagc gccggcgatg ctgcccttca
      781 tgccgccatg cttgtcgcga cacttactgc ggctgataga tcgaatcgaa cacgccgcca
      841 tcggcgaaat gcgtcttttg cgccttggtc cagccaccga acgagtcatc gatggtgtag
      901 agcttgatct tcggaaactg cttcgtcagt gctgcgggaa ctgccgtgga acgcggccga
      961 tagaagttgc gtgccgcgat ctcctggcct tcctcgctat acagatactt gaggtaagcc
     1021 tcagccagct tgcgtgtgcc atgacgatcc acgaccttgt ccacgaccgc gaccggcggc
     1081 tctgccagga tgctcaccga cggcacgacg atctcgaact tgtccgaacc gaattccttc
     1141 aacgacaaga acgcctcgtt ttcccacgcg atcagcacgt caccctgccc gcgctgcacg
     1201 aagctggtgg tggcgcccct tgcgcctgaa tccagcacgc cggcattctt atagagcttg
     1261 gtcacgaagt ccttggcggt cgtcgcgttg ccacccggca gatgttctgc ataagtccac
     1321 gctgcgaggt aattccaacg cgcgccaccc gaggtcttcg gattcggcgt cacgatggac
     1381 acgcccggct tgagcaggtc cggccaatcc ttgatctgct tcgggttgcc tttgcgcaca
     1441 aggaacacga tcgtcgatgt atacggcgac gcgttgtccg gcaagcgctt ctgccagtcc
     1501 tgagcaacca gccccttggc tgcgagtgca tcaatgtcat aggccagcgc cagcgtcacc
     1561 acatctgcct gcaagccatc gaggaccgag cgcgcctgac cgcccgagcc gccatgcgat
     1621 tgcttgaacg tgacggtctc tccggtttca gccttccatt tcttgccgaa agcctgattg
     1681 aactcctggt acagctcacg cgtcgggtcg tacgacacgt tcaggaacga cgtgtcggcg
     1741 tgcgcttgcg cgatcattcc cgcggtcatc ccggtcgctg acactgcccc aatcaccgcc
     1801 gtggcaaata gcttccttgc acgtgcgccc caccccgaat tccgactcag cattgcccct
     1861 ttccccgtct tatgtgtttg agcagccgag tctatcgatg gcctttcatt attaaaaata
     1921 attgttattc attcttttag atcaaaaagt gctaatgacg gctggaagcg gcgttgcggc
     1981 catcaaacag gcgttggagc accgtgttta cgccctctgt gtggttctca cgacgtcgta
     2041 cttaaagtaa agcttgaaaa gcgacgaata ctgtataaaa ctacaggcat ctgttcatcc
     2101 atacagtgga cgaccggcca tacaaggggc aaaagcacgt gaccaaaatg agcaaactga
     2161 ctgcgcggca gcaagaggtt ttcgaactga tccagcgcgc gatcgaacgc acggggtttc
     2221 cgcccacgcg cgccgagatc gcagccgagc ttggttttag ctccgctaac tccgccgaag
     2281 agcatcttcg ggcgctggcg cgtaaagggg taattgaact ggcggcgggt tcatcgcgtg
     2341 gcattcgctt gctgaccaat ggcggcctgg acgatggacc ccatcagttc acgttgccac
     2401 atgccagcat catgcaattg ccgctggtcg ggcgcgtggc ggctggtagc ccgatcctcg
     2461 cgcaggaaca tatctcccag cattacgcct gtgacccggc gctgttttcc agcaaaccgg
     2521 actatctgtt gaaggtgcgc ggtctttcca tgcgcgacgc aggcatcttc gacggtgatt
     2581 tgctcgccgt gcagaagaaa aacgaggcta aagacgggca gatcgtcgtg gcgcgaattg
     2641 gcgacgacgt cacggtgaaa cgctggaaac gtcgtccaga tggcgttgaa ctgatcgctg
     2701 aaaatcctga ttacgagaac atcttcgtag cgtcaggcag cgacgacttt gcgttggaag
     2761 gtattgcggt cgggttgatt cgttccggcg agctttgatc tctgcaaggt tttcagtttc
     2821 tgccttgatt tctgtttgtt gatttctgat ttgcagagcg gcggtgggtg ttcctggatg
     2881 ttccgggtct tcctgcctcc agccgcactg cgcttgaatt ccggccctat aaagcgtgac
     2941 ggacatcgca ttcgcgatga accggcgcgc gtcctattgt catcggtcat cggagaaaca
     3001 tcatggaacg attcgcccgg ctgttttctg cttctttttt atccgcatcg ttcgcgccga
     3061 cagcacgcgc ccccctgtc
//
LOCUS       DATGBK010000685         1939 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286347, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000685 DATGBK010000000
VERSION     DATGBK010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286347"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            225..1322
                     /gene="mreC"
                     /locus_tag="VKJ77_09740"
     CDS             225..1322
                     /gene="mreC"
                     /locus_tag="VKJ77_09740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HMC45593.1"
                     /translation="MEYSPPPLFKQGPSALARLIFFVVLALALLISDARFNTLEIVRG
                     VLGAGLYPLQRAALVPRDIFMGAADLAVTSATLRNENSKLKAKNLELSVKAGDAAQLT
                     AENTHLRSLLELGSRASTQTTPVEVQYDTRDPFTQKVVIGKGSQQGIQDGAPVVNEDG
                     VIGQITRVFPLQSEVTLLSDKDQAVPVQIVRTGLRSVIYGTPKGDTLDLRFVPISADV
                     QTGDELVTSGLDGIYPPGLPVAKVVRVDKQADTAFARVVCLPIAPVRGARQLLVLHYE
                     VNQPPNPEEVEAAAAAKEAKDNKGKKKAAPAKSASAAAPAAAASTPAAKKPEPPAPVK
                     KTEPAAAKKSEKSEHAKKAEAARKPAPGVAP"
     gene            1319..1831
                     /gene="mreD"
                     /locus_tag="VKJ77_09745"
     CDS             1319..1831
                     /gene="mreD"
                     /locus_tag="VKJ77_09745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004189260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HMC45594.1"
                     /translation="MNRPQYILQPVNQYFITFSLAAAFLLNLMPWGRTFGVPDFVAVV
                     LLFWNVHQPRRVGMGIAFMLGMLMDVHNASLLGEHALAYTLLSYGAITIHRRVLWMSL
                     PVQTFVVAPLLIGAQIVPFVIRLLTGAAFPGWGYLIDGFVEAILWPVASFLLLIPQRR
                     ATDPDDTRPI"
BASE COUNT          385 a          625 c          577 g          352 t
ORIGIN      
        1 cggcagcatc ttctcctacg agtaagcctt gacgcctttc actaaggcgc caacagcacg
       61 cactcgctca aggcaactac ggcgacgtgc gcgaagtatg cgacttgcgc aatggttcac
      121 tcggcccggc ttagtccgga ccgcggcgaa cggcgctggg cagggcctcg cccccacgcg
      181 gacccgcagc atcgaaccaa ccgatcacgc cctcggcgcc gaccatggaa tacagtccgc
      241 cgccactttt taagcaaggt ccatccgctc tagcgcgatt gatcttcttc gtggtgcttg
      301 ccctcgccct gctgatctcc gacgcccgct tcaacacgct cgagatcgtg cgcggcgtgc
      361 tgggagcggg tttgtatccg ctgcagcgcg cggcgctcgt accgcgcgat attttcatgg
      421 gtgcggccga tctggccgtc accagcgcaa ccctgcgcaa tgagaacagc aagctgaaag
      481 caaagaacct cgagttgtcg gtaaaagcag gcgatgcggc ccagctcacc gccgaaaaca
      541 cgcatcttcg ctcgctgctc gagctcggct cgcgcgccag cacgcaaacg acgcctgttg
      601 aagtccagta cgacacccgc gatcctttca cgcagaaagt cgtgatcggc aagggttcgc
      661 agcaaggcat ccaggatggc gcgccggtgg tcaacgaaga cggcgtcatc gggcagatca
      721 cgcgtgtgtt cccgctgcaa tcggaagtca cgctgctctc cgacaaagac caggccgtgc
      781 ccgtccagat cgtacggacc ggattgcgca gcgtgatcta tggcacgccg aagggcgaca
      841 cgctcgatct gcgtttcgta ccgatcagcg ccgacgtgca aactggcgac gaactcgtga
      901 ccagcggtct ggatggcatt tatccgccgg gattgcccgt ggcaaaagtg gttcgcgtcg
      961 acaaacaagc ggataccgcg ttcgcccgcg tagtctgcct gccgatcgcg ccggtacgcg
     1021 gtgcgaggca gttgctcgtg ctgcattacg aggtcaacca gccgccgaat cctgaagaag
     1081 tcgaggcagc ggctgcggcc aaggaagcga aggacaacaa gggtaagaag aaggccgcgc
     1141 cagcgaaaag cgccagcgcg gccgcccctg cggctgcggc gagtacgccc gccgcgaaaa
     1201 aacccgaacc gccggcgcca gtgaagaaaa ccgagcccgc cgccgcgaag aaatctgaaa
     1261 aatccgagca cgcgaagaaa gctgaagctg cccgcaagcc ggcgcccgga gtagcaccat
     1321 gaaccgtccg caatacatcc tgcagccggt caatcagtac ttcatcacct ttagtctggc
     1381 cgccgcgttc ctgctgaacc tgatgccgtg gggccggact ttcggcgtcc cggatttcgt
     1441 cgcggtcgtg ctgctgttct ggaatgttca ccagccgcgt cgcgtgggca tgggtatcgc
     1501 gttcatgctc ggtatgctca tggacgttca caatgccagt ctgctcggtg agcacgcgct
     1561 cgcgtatacg ctgttgtcgt atggcgccat cacgatccac aggcgcgtat tgtggatgtc
     1621 tctgccagtg caaacgttcg tggtcgcgcc tttgctgatc ggcgcgcaga tcgtgccgtt
     1681 cgtgatccgc ctgctgacgg gcgcggcttt tcccggctgg ggttatctga tcgacgggtt
     1741 cgtggaagct atcttgtggc cggtcgccag tttcctgctg ctgattccgc agcgccgcgc
     1801 caccgatcct gacgacacgc ggccaatttg agttgactaa caagttaact aagcgcctgc
     1861 tgcaaccgct gcacgccaca cacgcggtcc ccgcgaacat tgcatgaccg aatttcagaa
     1921 cgccgaacaa cagttatcg
//
LOCUS       DATGBK010000686         3031 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_54936, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000686 DATGBK010000000
VERSION     DATGBK010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3031
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54936"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1982
                     /locus_tag="VKJ77_09750"
     CDS             <1..1982
                     /locus_tag="VKJ77_09750"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HMC45595.1"
                     /translation="DQGVTKTEIAERFGPKVAELVDGLSKLDKMEFRNREEAQAENFR
                     KMLLAMARDVRVILVKLADRLHNMRTLGAVPPEKRRRVARETIDIYAPIAHRLGLNNT
                     YRELQDLSFANFNPHRYATLERAVKAARGNRREVVGKILEAVQRTIADAKIKADVTGR
                     EKTIFSIYKKMRDKQLSFSQVLDVYGFRVVVDTALECYTCIGALHALYKPVPGKFKDY
                     IAIPKVNGYQSLHTTLVGPFGAPIEFQIRTRKMHEIAEAGVAAHWLYKNGGADLNDVQ
                     KRAHQWLKSLLDIQSEAGDSSEFLEHVKIDLFPDAVYVFTPKSKIMPLPRGATALDFA
                     YSIHSDLGNQCVAVKINNELLPLRTELKSGDIVEVITAPYSKPNPAWLGFVRTGKARS
                     AIRHYLKTMRLNESVQLGERLVDQCLKGYGLALSEVTPEAWEKLAQWTGNKSRQEIFA
                     DIGLGRRVAAVMAKRIEVLMTGRDDDDSPRESFSTNTAPPVVITGTEGMSVQLSACCR
                     PIPGDDIMGYIGIGLGMAIHTTECRVAQRIHKRDPGRWIDVAWAPQPGRLFDVAIKVL
                     VSTSKGVFARVAADITSADANIVHIAMDEDVTQESTVLRFVIQVSDRVHLANVMRRVR
                     TNPDVMRIARERPSDEPHHRNTEGGMRIDRERGDY"
     gene            2106..2597
                     /locus_tag="VKJ77_09755"
     CDS             2106..2597
                     /locus_tag="VKJ77_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protein NinX family protein"
                     /protein_id="HMC45596.1"
                     /translation="MKTSELEGAELDYWVARGLHDFIREIHFTDGGQTLSIRGNDRGR
                     AWDGRFLPSTSWEAASVVLERACRLEMNDHGRGEVVCTAIFGKAGAEVEGRGQSLRIA
                     LLRAFLAHAFGDTVDDEFPHRSQMLLGERAELLGEQSAAATVEDAPLPDGRIGDIGST
                     ARQ"
     gene            complement(2741..2817)
                     /locus_tag="VKJ77_09760"
     tRNA            complement(2741..2817)
                     /locus_tag="VKJ77_09760"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2781..2783),aa:Arg,seq:acg)
     gene            complement(2908..2984)
                     /locus_tag="VKJ77_09765"
     tRNA            complement(2908..2984)
                     /locus_tag="VKJ77_09765"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2948..2950),aa:Arg,seq:acg)
BASE COUNT          647 a          865 c          956 g          563 t
ORIGIN      
        1 aagatcaggg cgtgacgaag accgaaatcg cggaacgttt cgggccgaag gttgcagaac
       61 ttgtcgatgg cttgtcgaag ctggacaaga tggagttccg caatcgcgag gaagcgcagg
      121 cggaaaattt ccgcaagatg ctgctcgcca tggcgcgcga cgtccgtgtg attctcgtca
      181 agctggcaga ccggctgcat aacatgcgca cgctgggtgc ggtgccgccg gaaaaacggc
      241 ggcgcgtggc gcgtgaaacc atcgacatct atgcgcctat tgcgcatcgg cttgggttga
      301 acaacacgta tcgcgaactg caggacctga gcttcgcgaa cttcaatccg catcgttacg
      361 ccacgctcga gcgcgccgtg aaggccgctc gcggcaaccg gcgtgaagtg gtgggcaaga
      421 tccttgaagc ggtccagcgc acgattgcgg acgcgaaaat caaggccgac gtgaccggcc
      481 gcgagaaaac catcttcagc atttacaaga agatgcgcga caagcagttg tcgttctcgc
      541 aagtgctcga cgtctacggc tttcgcgtgg tcgtggatac cgcgctcgaa tgttatacgt
      601 gcatcggcgc gctgcacgcg ctctacaaac cggtgccggg caagttcaag gactacatcg
      661 ccattccgaa ggtgaacggc tatcagtcgt tgcacaccac gctcgtcggc ccgtttggtg
      721 cgccaatcga gttccagatc cgcacgcgca agatgcatga aatcgcggaa gcgggcgtgg
      781 ctgcacattg gctttacaag aatggcggcg cggatctgaa cgacgtgcaa aagcgcgcgc
      841 accagtggct gaagtcgctg ctcgacattc aaagcgaagc cggcgattcc agcgagttcc
      901 tcgaacacgt caagatcgac ctgttccccg atgcggtcta cgtgttcacg cccaagtcga
      961 aaatcatgcc gctgccacgc ggcgcgacgg cgttggattt cgcgtattcc attcacagcg
     1021 acctgggcaa tcaatgcgtc gcggtgaaga tcaataacga attgctgccg ctgcgcaccg
     1081 agttgaagag cggcgatatc gtggaagtga tcacggcgcc gtattcgaag ccgaatcccg
     1141 cgtggcttgg cttcgtgcgt accggcaagg cacgttcggc cattcggcac tatctcaaga
     1201 ccatgcggtt gaacgaatcg gtgcaactgg gcgaacggct cgtcgatcaa tgcctcaaag
     1261 gttatggcct ggcgttgtcg gaagtgacac ctgaagcctg ggaaaagctg gcgcaatgga
     1321 ccggcaacaa gagccgtcag gaaattttcg cggacatcgg tcttggccgg cgcgtggccg
     1381 ccgtgatggc caagcgtatt gaggtgctga tgaccggtcg cgatgacgac gattccccgc
     1441 gcgagagctt cagcacgaat accgcgccgc cggttgtgat cacgggcacc gaagggatgt
     1501 cggtgcagct gtctgcctgc tgccgcccga ttcccggcga cgacatcatg ggttacatcg
     1561 gcatcgggct gggtatggcg atccacacca ccgaatgccg tgtggcccag cggattcaca
     1621 agcgcgatcc gggccgctgg attgacgtgg cctgggcgcc gcagccgggc cgtctattcg
     1681 atgtagccat caaggtgctc gtcagcacgt cgaagggcgt gttcgcccgc gtagcggctg
     1741 atattacgtc cgccgatgcc aacattgtcc acatcgccat ggacgaggac gtgacgcagg
     1801 aatccaccgt gctgcgtttc gtcatccagg tcagcgatcg cgtgcacctg gcgaacgtca
     1861 tgcggcgcgt gcgcacaaat ccggacgtaa tgcgcatcgc gcgtgagcgg ccgagtgacg
     1921 agccgcatca tcgcaatact gaaggcggca tgcggatcga tcgcgaacgc ggcgattatt
     1981 aacgcctggc gttcgcctcc tggcgagagc ggccggcgga gcctgagtct gagtctgagc
     2041 tcgatccgcc gccgctgaaa agcgacctgc gtgcctgtac ccattctgcg tacacagggg
     2101 cacttatgaa aacatcagaa ctggaaggcg ccgagctcga ctattgggtc gcgcgcgggc
     2161 tgcacgactt catccgcgaa atccatttca ccgatggcgg ccagacgctg tccattcgcg
     2221 gcaatgaccg tggccgggca tgggacgggc gcttcctgcc gtcgacgtcg tgggaagcgg
     2281 catccgtcgt actcgagcgt gcgtgccggc tggagatgaa cgaccacgga cggggcgaag
     2341 tcgtgtgcac ggcgatattc ggcaaggccg gtgcggaagt ggaggggcgc ggacagtcgt
     2401 tgcggatcgc attgctgcgc gcttttttgg cgcatgcgtt cggagacacg gtggatgatg
     2461 agtttccgca tcgctcgcaa atgctgcttg gggaacgggc agaactgctg ggcgagcaga
     2521 gcgcggcggc gacggttgaa gatgcaccgt taccggatgg acgtatcggc gatatcgggt
     2581 ccactgcgcg gcaataaggg cgtttgttgc gcctcaggcg ctgttcggaa tcttggcttc
     2641 gcgttcgtcg cacgcccaac acggccggcg tgcggatttc gctcgcgcaa acgtccgcac
     2701 aaacaaaaag ggccttccgt gaggaaggcc cttctaaaac tggtgcggct ggcaggattc
     2761 gaacccacga ccccttggtt cgtagccaag tactctatcc atctgagcta cagccgcgca
     2821 tgaaacaggg taatacaaaa agctgatgca ggaaacgctt gcctgaaaca aaaaactaaa
     2881 acgctcaact aaaacgtttt gaagaagtgg tgcggctggc aggattcgaa cccacgaccc
     2941 cttggttcgt agccaagtac tctatccatc tgagctacag ccgcacgcga gaccaagagt
     3001 atagccaagc tctcccaaaa aaggaagggt t
//
LOCUS       DATGBK010000687         2187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147059, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000687 DATGBK010000000
VERSION     DATGBK010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147059"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..616)
                     /locus_tag="VKJ77_09770"
     CDS             complement(116..616)
                     /locus_tag="VKJ77_09770"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HMC45597.1"
                     /translation="MTTLTLIVARARNGVIGRNNQLPWRLPEDLAFFKRTTMGAPIVM
                     GRKTHESIGRVLPGRRNIVVTRDAQRRFDGCDTVTGLADALELGARDDAGEVFLIGGA
                     ELFREGWPLAHKLILTEIDADFPGDISLDAPNAAVWKEVSRETHHAAAPNDFDYSFVI
                     YERRTA"
     gene            complement(699..2141)
                     /locus_tag="VKJ77_09775"
     CDS             complement(699..2141)
                     /locus_tag="VKJ77_09775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC45598.1"
                     /translation="MGASPTVDSITADRAGVSSLPIVPTPHAASAVRNLLYVAQEPDQ
                     ALVAYLKGLGWKVSAGTLATQANVLKTDTPVAGIVDMTSFSARELAALEPALRHQRAG
                     WIALTDDNRLADPVVCHLIRHFCFDFVKGPFSNSTIGYLVDHAYGMVSLGDIDLAETP
                     IVFGDEQMVGTCEAMQQLFRTIRKVANTDANVFITGESGTGKELTAVAIHERSPRRKG
                     PFVAINCGAIGNHLIQSELFGYERGAFTGANQRKIGRVEEADGGTLFLDEIGDLPLDS
                     QVHLLRFLQERKIDRLGGHDPVAVDVRIISATHIDLEAAMASGRFRTDLFHRLCVLRV
                     DEPPLRARGKDIEILALHVLHKFRSDGRRKIIGFAPSAIEAMYSYAWTGNVREMINRV
                     RRAIVMAENKLITADDLGLGHCTGIESTTLAAARDAAEKRAIELTLLRHRHKLNEAAA
                     ELGISRVTLYRLMVAHGLRGAAMANSADAG"
BASE COUNT          395 a          696 c          693 g          403 t
ORIGIN      
        1 tctgtggaag tgaaaaagcc cggaacggcg ctaaccgttc cgggcttttt caatggaaaa
       61 ccgcggtggg ctaaccggct gacccgctag ccgatcgagc gcccggaatt ccaggctaag
      121 ccgtgcgccg ctcgtaaatc acaaacgaat agtcgaaatc attcggcgcc gcagcatgat
      181 gcgtctcccg cgagacctct ttccagacgg ctgcgttggg tgcatcgagg gaaatgtcgc
      241 cggggaaatc ggcatcgatc tcggtcagga tcagcttgtg cgcgagcggc cacccttcgc
      301 gaaacaactc ggcgccaccg atcaggaata cctcgccggc gtcgtcccgt gcgccaagtt
      361 ccagtgcatc ggcaagcccg gtcaccgtat cgcagccgtc gaagcggcgc tgggcgtcgc
      421 gcgtgacgac aatattgcgc cgtcccggca acacccgtcc aatggactca tgcgtcttgc
      481 gtcccatcac gatcggcgcg cccattgtcg tgcgtttgaa gaacgcaagg tcttcgggca
      541 agcgccaggg caattggttg ttgcgcccga tcacgccatt acgcgcgcgg gcgacgatca
      601 gggtcagcgt cgtcatggtg tggatatccg ttccggcttg gagacaaatc aagccgtaga
      661 ttctacccga cgcctgacgc ccgccgtcgc gagccttctc accccgcgtc cgcgctgttt
      721 gccatcgccg cgccgcgcaa cccatgcgcg accatcagcc tgtacaacgt cacccgcgag
      781 atccccaatt ccgcagccgc ttcgttgagc ttgtgccgat gccgcagcaa cgtcagttca
      841 atcgcgcgct tctcggcggc atcgcgggca gcggccagag tagtcgattc aatgccggtg
      901 cagtgaccga gcccgaggtc gtcggcggtg atcagcttgt tctccgccat cacgatcgcg
      961 cgccgcacgc ggttgatcat ctcgcgcacg ttgccggtcc aggcgtagct gtacatcgct
     1021 tctatcgccg acggcgcaaa gccgatgatc ttgcgcctgc cgtcactcct gaatttgtgc
     1081 agcacgtgca gcgcgagaat ttcgatgtcc ttgccgcgcg cccgcagcgg cggttcgtcc
     1141 acgcgcagca cgcaaagccg atggaataga tcggtacgaa accggccact ggccatggcg
     1201 gcttccagat cgatgtgggt cgcggaaatg atccgcacgt caacggcgac agggtcgtgc
     1261 ccgccgagcc ggtcgatctt gcgttcctgc aggaaacgca gaagatgcac ctggctgtcg
     1321 agcggcaggt cgccgatttc atcgaggaac agcgtaccgc cgtcggcttc ctccacccgg
     1381 ccgatcttgc gctggttcgc gcccgtgaat gcaccgcgct cgtagccgaa cagttcggac
     1441 tgaatcaggt gattgccgat cgcgccgcag ttgatcgcca cgaatgggcc cttgcggcgc
     1501 ggcgagcgct cgtggatggc cacggccgtc aattccttgc cggtccccga ttcgccggtg
     1561 atgaacacgt tggcgtcggt gttcgcgact ttgcggatgg tgcgaaagag ctgctgcatg
     1621 gcctcgcagg tgccgaccat ctgctcgtcg ccgaacacga tcggggtttc ggccaggtcg
     1681 atgtcgccga ggctcaccat gccgtacgcg tgatcgacga ggtaaccgat agtcgagttc
     1741 gagaacgggc ccttcacgaa gtcgaagcag aaatgccgga tcaagtggca gacgaccggg
     1801 tccgcgaggc ggttatcgtc agtgagggcg atccagccgg cccgctgatg ccgcagcgca
     1861 ggttcgagcg cggcgagctc gcgcgccgaa aagctggtca tatcgacaat gcccgctacc
     1921 ggcgtgtcgg ttttcagcac gttggcctgg gtggcgagcg tccccgccga taccttccag
     1981 ccaaggccct tcaaatacgc gaccagcgcc tgatccggct cctgggcaac gtagagaagg
     2041 ttgcgcacgg ctgatgccgc gtggggcgtc ggaacgatcg ggaggcttga cacaccggcg
     2101 cgatcagctg tgatcgagtc gacagtgggg ctggcgccca tcgggggtaa tggcgtcggt
     2161 gcgtttttat ccgacacggg tacggag
//
LOCUS       DATGBK010000688         1985 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_193990, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000688 DATGBK010000000
VERSION     DATGBK010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193990"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            320..1078
                     /gene="phnF"
                     /locus_tag="VKJ77_09780"
     CDS             320..1078
                     /gene="phnF"
                     /locus_tag="VKJ77_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0015716 - organic phosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism transcriptional regulator
                     PhnF"
                     /protein_id="HMC45599.1"
                     /translation="MTSNETGTPGLAVERGAGIAVWRQIEQILSAEITAKSFGEDGRL
                     PSEAELARRFDVNRHTVRRAMLRLAATGLVSVEQGRGTFVQPGAIDYQIGRRTRFTEN
                     LRRNNQASVGLILSSAKVKADPVTAKALSIRAGTFVYEIETRHDSDDVPLTYARSWFP
                     AMRFADLPGVLAGVEGVSAALVEFGVVDYTRKWSRIGCVLPSSEVARRLQINRAQPVM
                     WVESVDVDEAGVPIKYGITHFAADRVQLLVEDGI"
     gene            1075..1848
                     /locus_tag="VKJ77_09785"
     CDS             1075..1848
                     /locus_tag="VKJ77_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1045 domain-containing protein"
                     /protein_id="HMC45600.1"
                     /translation="MSCEASSKASDIDLNAWTPGSRIALYYAPPASSAWWHAGCEWLG
                     RDAETGRSIETPEEPVIAALGQAVAALTGSPRRYGWHGTLVAPFHTAEGVTPQEVLSV
                     AREWADHIEPFDAPLSAVEMGRFVALHAARPDDDESIRRVAASALHALTSLRARPSAE
                     DAERRLASGLSERQRTLLHEWGYPYVLDEFRFHMTLSDALDSASVRAAIVSLWQSRAE
                     ALGPLPVHGAALFVQPTRGAPFTLWQRLPFANAHSEALE"
     gene            1845..>1985
                     /locus_tag="VKJ77_09790"
     CDS             1845..>1985
                     /locus_tag="VKJ77_09790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism
                     protein/1,5-bisphosphokinase (PRPP-forming) PhnN"
                     /protein_id="HMC45601.1"
                     /translation="MNTETGRLIYVMGPSGAGKDSLLGFVRERIGAQVMFAHRYITRP
                     VSD"
BASE COUNT          368 a          622 c          614 g          381 t
ORIGIN      
        1 catgctggcc cgcggcgtgc gcgccaggat tgccagccac tcccgccgcg tcgcgggacc
       61 ggaaggcgcg ggtggcgccg acgtctgcgc agatgtactc atggtcttac ctcgtcaata
      121 aagggcgctt gagacaaacc gcgtccgtga tttcatcgtc ctgtccagcc tcaacgctac
      181 tagaatagtc atccggtcgt ctagacgttt gttcaaccgg ataaaaattc ctcgctagcg
      241 ccctgctttc acattttcgc catcggcggc gcactacaat gccgaaaacg atattcaaac
      301 cgacaggaat gacagcgaca tgacatctaa cgaaactggc acaccgggcc tggccgtgga
      361 acgcggcgcg ggcattgcgg tatggcgtca gatcgaacag attctttcgg cggagattac
      421 ggcaaagagc ttcggagaag acggccgcct gcctagcgag gccgaactcg cccggcgttt
      481 cgacgtcaac cggcacacgg tacgccgcgc gatgctgcgc ttggccgcca cgggactggt
      541 gagcgtcgaa cagggccgcg gcacgttcgt gcaaccgggc gcaattgact atcagatcgg
      601 gcggcgcacg cgcttcactg aaaacctccg gcgtaataac caggcgtccg tgggactgat
      661 cctttccagc gcgaaagtga aggctgatcc ggtcaccgcg aaagcgctct ccatccgcgc
      721 agggacgttc gtgtacgaga tcgagacacg gcacgactcc gacgatgtgc cgctaaccta
      781 cgcacgtagc tggtttcccg ccatgcgctt cgccgacttg cccggcgtgc ttgccggtgt
      841 agaaggagtc agcgcggcgc tggttgaatt cggcgtggtt gattacacgc gcaaatggag
      901 ccgtatcggc tgcgtcctgc ctagctcgga agtcgcgcgg cgcttgcaga tcaatcgggc
      961 gcaaccggtg atgtgggtgg aaagcgtaga cgtcgacgaa gccggtgtgc ccatcaaata
     1021 cggtattacc cacttcgccg ccgaccgggt gcaattgctg gtcgaggacg gtatatgagc
     1081 tgcgaagcga gcagcaaagc gagcgacatc gacttaaatg cctggacgcc cggttcgcgc
     1141 atcgcgctgt actacgcacc acctgcgtct tccgcatggt ggcacgcggg ctgcgaatgg
     1201 cttggccgcg atgccgagac cggacgctca atcgaaacac ccgaggagcc agtcattgcc
     1261 gcgctcggac aggccgttgc ggcgctcacc ggatcgccgc gccggtatgg ctggcacgga
     1321 acgctcgtcg cgccttttca taccgccgaa ggtgttacgc cgcaggaggt tttgtcggtc
     1381 gctcgcgagt gggcggatca cattgaaccc tttgatgccc ccctgtccgc ggtcgagatg
     1441 ggccgcttcg tcgcattgca tgccgcgcgt ccagatgacg acgaatccat ccgccgggtt
     1501 gctgccagcg cgttgcacgc gctcacctca ctgcgtgcgc gcccctcggc agaagatgcc
     1561 gaacgacgcc tggcgtcagg cttgagcgag cggcagagaa ccctgttgca tgaatggggc
     1621 tacccgtatg tgctcgatga attccgcttc cacatgacgc tctccgatgc acttgattcg
     1681 gcttcggtgc gtgcggccat cgtctcgctg tggcaaagcc gcgctgaagc gctcggaccg
     1741 cttcccgtcc acggagcggc gctttttgtt caaccaacgc ggggtgcgcc attcactcta
     1801 tggcagcgcc tgcccttcgc gaatgcccat tccgaggccc ttgaatgaac acggaaaccg
     1861 gtcgactgat ttacgtgatg gggccgtcgg gcgccggtaa ggactccttg ctcggcttcg
     1921 ttcgtgaacg cattggcgcg caggtgatgt tcgcgcatcg ctacatcacg cgccccgttt
     1981 ccgat
//
LOCUS       DATGBK010000689         4948 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_309234, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000689 DATGBK010000000
VERSION     DATGBK010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4948
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309234"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(486..956)
                     /gene="cynS"
                     /locus_tag="VKJ77_09795"
     CDS             complement(486..956)
                     /gene="cynS"
                     /locus_tag="VKJ77_09795"
                     /EC_number="4.2.1.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020204195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008824 - cyanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanase"
                     /protein_id="HMC45602.1"
                     /translation="MTQSQYSPAPREALTDAVIEAKVRKNLTFAQINEGTGLSIAFVT
                     AALLGQHPLPANAAKVVADKLELGEDAVRLLQTVPVRGSIPGGVPTDPTVYRFYEMIQ
                     IYGSTLKALVHEQFGDGIISAINFKLDIKKVDDPEGGSRAVITLDGKYLPTKPF"
     gene            complement(1000..1659)
                     /locus_tag="VKJ77_09800"
     CDS             complement(1000..1659)
                     /locus_tag="VKJ77_09800"
                     /EC_number="4.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011356406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HMC45603.1"
                     /translation="MQEIIDGFLKFQRDAFPQRSQLFKQLATSQHPRTLFISCSDSRL
                     VPELVTQREPGDLFVIRNAGNIVPSYGPEPGGVTATVEYAVAALGVTDVVICGHSDCG
                     AMTAIATCKCMDHMPAVRNWLHYADSAKVVNEAREHKSQRDRVDSMVRENVIAQLANI
                     KTHPSVRLALEQGHLALHGWVYDIESGSIDTLDGATDRFVSLAEHPHACATPARLNIA
                     A"
     gene            1784..2698
                     /gene="cynR"
                     /locus_tag="VKJ77_09805"
     CDS             1784..2698
                     /gene="cynR"
                     /locus_tag="VKJ77_09805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017330786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CynR"
                     /protein_id="HMC45604.1"
                     /translation="MLLRHIRYFLAVAEHRNFTRAAEALHVSQPTLSQQIRQLEDTLR
                     VQLLDRSGRTIQLTDAGSAYLRYAQRALQDLEEGRRAIHDVQELSRGSLRLAMTPTFT
                     AYLIGPLMEKYNRRYPNITLNILEMPQERMEALLNEDALDVGIAFDDTHSPEIETQAL
                     FVEALAMVVGKSHPYAKKRAALTLREFESEALVLLNEEFATRHYIDRYCRQHGVAPRI
                     AMEVNSVSAVIELVHRSTLATLLPAAIAREHNELRLVYLEPALPQRTAALLLRKGAYR
                     SAAARAFIALALEESAAEPGGRRTKLAS"
     gene            complement(3053..3643)
                     /locus_tag="VKJ77_09810"
     CDS             complement(3053..3643)
                     /locus_tag="VKJ77_09810"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HMC45605.1"
                     /translation="MRPDLISGATFPNYELSDHTGKHRKLSELQEQHPLVLVLSRGGF
                     CPKERRQHEGLVQLHRELEVGYCRLVTISTDNITETNEFRSGMSAHWPFLSDPRRTVQ
                     KDLDIAEYTDPGHNPMIPYTIVLEPGLVIYKIYNGYWFFGRPTVEELRQDLRAVTKKC
                     RPDWDITTPELKAAWQQGRKELFYPYGRTYAQTIGE"
     gene            complement(4044..>4948)
                     /locus_tag="VKJ77_09815"
     CDS             complement(4044..>4948)
                     /locus_tag="VKJ77_09815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020703357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45606.1"
                     /translation="GWRSIFWVNVPICVAGFALTYYVVPPMVRKESSRHFDLPGQLLS
                     VLALIGFIGAVIEVQARGLSSLVVQGGFVLAFVAGAAFLMVESRVRAPMLPLTLFHSM
                     RFSGAVLFGVLANFTYYGMIFVLSFYLQKVRGYSVFETGLTFLPLTGSAVISNIASGR
                     LSARTGLRVPMVVGGLIGCIGYALLGTFGISDHATFLDMLPGLALIPIGSGLAIPAMT
                     TSILSSVERHQAGTASAVLNTARQVGGATGVAIFGAIAASGTAVGVMGGVRSAVAISA
                     VLMLTSSAIVFWSRAGLAPMAQAS"
BASE COUNT          979 a         1439 c         1541 g          989 t
ORIGIN      
        1 aaagattgat acggcgtcca ccagagatcc cgtccgtact gtactttcag tgggcgcgcc
       61 caactaatga tgcgaaatcg cgattgcatc cgtatggttg tattgcttgc catcttccat
      121 ttccgcaatg agcgcgctag cggtgtgggg ccgattcccg ggtgctcatg agaggctgcc
      181 cggcatcgtc gtcagcgagt tgacgcgcca acgcttggtc aatctcgtta tcaagcggtt
      241 cttgtcggct acgggtcgtt gagcacgacc ggttgttcgt caggcgtcgt cggtgcctgc
      301 aaaagcggga gcagcgatag cgcttgcaac gattagggcg gcaagaatgc ggatcctcat
      361 gatgttctcc atcgagtaaa agaattcggc gagcgcgtca gaagcctgcg tcgctatttt
      421 taaataatat gtattccgaa tcgatgtgac gggatcatcc ccgttagaat gactcccatg
      481 tcacctcaga acggcttggt cggcagatat tttccgtcaa gcgtaatcac ggcacgcgaa
      541 ccaccttccg gatcgtcgac cttcttgatg tcgagcttga aattgatcgc gctgatgatg
      601 ccgtcgccga actgctcgtg aaccagcgcc tttagcgtcg agccgtagat ctggatcatc
      661 tcgtagaagc ggtagacggt cggatcggtc ggcacgccgc ccggaatact gccgcgcacg
      721 gggacggttt gcagcagtcg aacagcgtct tcgccgagtt cgagcttgtc ggccacgact
      781 ttcgcggcat tggccggcag cgggtgctgg ccgagcaggg cggcagtgac gaaggcaatg
      841 ctgagcccgg taccttcgtt gatctgcgcg aacgtcaggt tcttgcggac cttcgcttcg
      901 atgaccgcgt cggtaagggc ttcgcggggt gccgggctgt attgggattg cgtcatgatg
      961 atgctccttg agatggaatg aagtggaaaa gcaggttgtt caggctgcga tgttgagtcg
     1021 agccggggtt gcacaagcgt gcgggtgttc cgcgagagat acgaagcggt ccgtcgcgcc
     1081 gtcgagcgta tcgatcgagc cgctttcgat gtcgtacacc cagccgtgca gggccagatg
     1141 tccttgttcg agcgcgagcc gcacggaagg atgagtcttg atgttcgcga gctgggcgat
     1201 cacgttttcg cggaccatgg agtcgacccg gtcgcgttgg ctcttgtgct cacgcgcctc
     1261 gttgacgacc ttcgcggaat ccgcgtaatg cagccaattg cgcacggcgg gcatgtgatc
     1321 catgcacttg caggtggcaa tggccgtcat cgcgccgcag tcggagtggc cgcagatcac
     1381 cacgtcggtg acgccgagcg cggcgaccgc gtattcgacc gtggccgtga caccgcccgg
     1441 ttccgggcca tacgagggca cgatgttgcc ggcgttgcgg atcacgaaca agtcgcccgg
     1501 ttcgcgctgc gtgaccagct ccggtaccag ccggctgtcc gagcacgaaa tgaacaaagt
     1561 acgcggatgc tggctggtgg ccagctgctt gaaaagctgg gagcgctgcg gaaacgcgtc
     1621 gcgctggaac ttcaggaagc cgtcgatgat ttcttgcatg tttcgctccg tcgggggtgt
     1681 ttgttgagaa ccgatggacg aagaatgcgc cgatggactt atagcgtcca agaccggttt
     1741 attattctgt ctatagacag aaccaatagt tcggaggcgt cccatgttgc tgcggcacat
     1801 ccgttacttt ctggcggtcg cggaacaccg caatttcacg cgcgcggctg aggcactgca
     1861 tgtgtcgcag ccgacgctgt cacagcagat caggcagctc gaggacacgc tgcgcgtgca
     1921 actgctcgac cgatcgggtc ggacaatcca actgacggat gcgggttcgg cttatttgcg
     1981 ttatgcgcag cgcgcgctac aagacctgga agagggcagg cgggcgatcc acgacgtgca
     2041 ggaattgagc cgcggctcgc tgcgcctcgc gatgactccc acgttcaccg cgtacctgat
     2101 cggtccgttg atggagaagt acaaccgccg ctatccgaac atcacgctga acatcctcga
     2161 aatgccgcag gagcggatgg aagcgttgtt gaacgaagat gcgctcgacg tcggcatcgc
     2221 cttcgacgac acgcactcgc ccgagatcga gactcaggcg ctgttcgtcg aagccctggc
     2281 aatggtggtc ggcaagtcgc acccgtatgc gaaaaagcgc gccgcgttga cgcttcgcga
     2341 gttcgagagc gaagcgctcg tgctgctcaa cgaagagttt gctacgcgtc actatatcga
     2401 tcgatattgc cggcagcatg gcgtcgcgcc gcgtattgcg atggaggtca attcggtcag
     2461 cgccgtcatc gagctcgtgc accgcagcac gcttgccacg ctgctgccgg ccgcgatagc
     2521 gcgcgagcac aacgaactac gtctcgtgta cctcgagccg gcgctgccgc agcgaaccgc
     2581 tgcgttgctc ctgcgcaaag gcgcgtatcg aagcgcggca gcaagggcat tcatagcgct
     2641 tgcgcttgag gaaagtgcgg ctgagccggg tggccgacga acgaaactag cttcgtaaaa
     2701 tgcaaacagt ccgaaccgcc tcgactactg gcggctgaag ccgccccgct tgaatgcagc
     2761 gctgatgcag catgaactcc gacacgctgc taccgtggac gctgcgcaaa cggctctgat
     2821 cggctctgat cgttacgctc tgtagggcta ttccttaggg tgaccgcccc gaatgtcacc
     2881 tggacgctcg taagccgact gccgcaagta aaacggcgac agtccctctc acgccctgag
     2941 gcagtccgtc aaggtttttt cgaggggtag gtgcagccca catccctgac cttttagcct
     3001 cgggcgtcgc tctttcatga atcggcgtat gtcggcgatc ccgccgctaa tcctattcac
     3061 cgatcgtttg ggcgtacgtc cttccgtatg ggtaaaagag ttcctttcgg ccttgctgcc
     3121 atgccgcctt gagctcgggt gtcgtgatgt cccagtccgg acgacatttc ttcgtcactg
     3181 cacgcaagtc ctggcgcagt tcttccacag tgggtcggcc gaaaaaccag tagccgttgt
     3241 agatcttgta gatgactaga cctggttcga ggacgatcgt gtaggggatc atcggattgt
     3301 ggcctgggtc ggtgtattcg gcgatgtcga ggtccttctg cacggtacgc cgtgggtccg
     3361 acaggaaggg ccagtgggcg ctcattccgc tgcggaattc attcgtctcg gtgatgttgt
     3421 cggtactgat cgtgaccagc cggcaatagc cgacctcgag ctcacgatgc aattgaacaa
     3481 gcccttcatg ctggcggcgc tccttgggac agaaacctcc gcggctcagg accagaacaa
     3541 gcgggtgctg ttcttgcagc tccgagagct tccggtgttt gccggtgtgg tcggacagtt
     3601 cgtagttggg gaaggtggcc cctgaaatca ggtcgggtcg catatgaagg tatcctcctc
     3661 gaatgttcat tgatcggcta cccgcaaatc ataccgccgt tattgcgaca gaatttgtgc
     3721 agcaaatagg cgcaatcctt tcagtcggtt gccagaggta cccaatggat gtaggcgcct
     3781 gcgctttggt cagccccttg ttcatcgccc ggttcaccta gaaagccact tatcggaact
     3841 gcactgtggc aaccaccgta gtcgccgtca cgagactttg gtctcgtgac gtgagggccg
     3901 gtcgcaggca cagatcacga aataggacgt gttttgagaa ctgcacaagc ggtgacacta
     3961 atccgccggc ctacggtagc tgggtttgtc gtaatgccaa gatacgtggc aggaatcgct
     4021 agcctcgctg ggcgaaaagg cgctcagctg gcctgtgcca tcggcgccaa gccggcccgg
     4081 ctccagaata cgatggcaga cgacgtcagc atgagcacgg cagagatcgc tactgcgctg
     4141 cgcacaccgc ccatgacgcc cacggcggtg ccgctggcgg cgatggcgcc gaagatggcg
     4201 acgccagtcg cgccgcccac ctggcgcgcg gtgttcagca cggcggacgc ggtccccgcc
     4261 tgatggcgtt ccacgctcga tagtatggat gttgtcatcg cgggtatggc cagcccactg
     4321 ccgattggaa tcagcgccag gccgggcagc atatcgagga aggtcgcgtg gtccgagatg
     4381 ccgaacgtgc cgagcagcgc gtagccgata cagccgatca ggccgcccac caccatgggc
     4441 acgcgcagcc cggtgcgcgc tgacaagcgt ccactggcga tgttggaaat gacagcgctc
     4501 cccgtcagtg gcaaaaaggt cagaccggtt tcgaacacgg aatagccgcg cactttttgc
     4561 aggtagaagc tgagcacgaa gatcatgccg taataggtga agttagccag cacgccaaac
     4621 aacacggcac ccgaaaaacg catgctatgg aacagtgtca gcggcagcat cggcgcccgc
     4681 acgcgactct cgaccatcag gaaggcggcg ccggcgacga aggccagcac aaagccgcct
     4741 tgcaccacca ggctggaaag gccccgtgcc tgcacctcga tcactgcgcc aatgaagccg
     4801 atcagcgcga gcacggacag cagctggccc ggcaggtcga agtggcgcga tgattccttc
     4861 ctcaccatgg gcggcacgac gtagtacgtc agcgcgaagc cggccacgca gatcggcacg
     4921 ttgacccaga agatgctgcg ccagcccg
//
LOCUS       DATGBK010000690         1879 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_54976, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000690 DATGBK010000000
VERSION     DATGBK010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1879
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54976"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1876)
                     /gene="malQ"
                     /locus_tag="VKJ77_09820"
     CDS             complement(<1..1876)
                     /gene="malQ"
                     /locus_tag="VKJ77_09820"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HMC45607.1"
                     /translation="MNTPATPDKTPSAIEALAAKAGFEVEWRDAHKQIQRVPEETLKV
                     LLERLGLPCGNPTQLKQSAATLDAELSGRKLPPLMTAEVDRGISLPMAAVKSGARYRI
                     ELESGAVIDGRFTSPKGETALLSPISEPGYHTLVINEQRTTLAVAPPRCYTVDDAWHA
                     LQPSTQANPQATPPMWGVAAQVYGLRRIGDGGVGDFSALATLASESAQRGSHAIAISP
                     MHAMFSAEPNKFSPYSPSSRLFLNIAHIDPAAVLGVEAAQAAIKTAGVADEFTELEAL
                     QLIDWPRVVTAKLAVLRALFAQFDAHDNDMLHKDFARFVKRGGRALEDHARFEALQAA
                     QLIEANEGHWRNWAGELRDPRSAAVAEFATAHKNEVDFFLFAQWLAAKGLSHAQHVAR
                     DSGMAIGLIADLAVGCDSAGSHAWSYRDEMLQGVSVGAPPDLFNQAGQSWGLTTFSPR
                     AMRTQGFSAFIDMLRAAFTLAGGIRIDHILGLRRLWLVPDGESAKNGAYLRYPLDDLL
                     RLIALESWRHKAIVIGEDLGTVPPGFRERLQEHGLLGIRVLWFERAEKGPGFKAPADW
                     DHDVAATTTTHDLPTVTGWWIGEDIVWRSKIGQTAARADGQDPVEMAQVERGEDRKLL
                     W"
BASE COUNT          311 a          613 c          604 g          351 t
ORIGIN      
        1 accacagcaa tttacgatcc tcgccacgct ccacctgagc catttcgacc ggatcctgcc
       61 cgtccgctcg cgcggcggtc tggccgatct tcgagcgcca cacgatgtcc tcgccgatcc
      121 accagccggt gaccgtcggc aggtcatgcg tggtggtggt cgcggccacg tcgtgatccc
      181 agtcggcggg cgccttgaag cccgggcctt tttccgcgcg ttcaaaccag agcacacgga
      241 tgccgagcag gccgtgttcc tgcaagcgtt cgcggaagcc gggcggaacc gtgccgagat
      301 cctcgccgat cacgatggct ttatgccgcc acgactcgag cgcgatcagc cgtaacaggt
      361 cgtcgagtgg ataacgcaga tacgcaccgt tcttcgcgct ttcgccatcg ggcacgagcc
      421 agagacgccg caagccgaga atgtgatcga tacgaatgcc acccgcgagc gtgaacgcgg
      481 cgcgcagcat atcgataaac gctgagaatc cctgcgtgcg catggcgcgc ggggaaaacg
      541 tggtgaggcc ccacgattga ccggcctggt tgaacaggtc agggggagcg ccgacggaca
      601 cgccttgcag catttcatcg cgatacgacc aggcgtggct gcccgcgcta tcgcatccca
      661 cggccagatc tgctatcagg ccaatcgcca tgcccgagtc gcgtgcgacg tgttgtgcat
      721 gcgacaagcc cttggccgcg agccattgcg cgaagaggaa aaaatcgacc tcgttcttat
      781 gcgcggtggc gaattccgcg acggccgcgc tgcgcggatc gcgtagttca ccggcccagt
      841 tgcgccagtg gccttcgttg gcttctatca attgcgctgc ctgcagtgcc tcgaagcgcg
      901 cgtggtcctc cagcgcgcgt ccgccgcgtt tgacgaagcg ggcgaagtcc ttgtgcaaca
      961 tgtcgttgtc atgtgcgtcg aactgcgcga acaacgcgcg cagcacggcc agcttcgccg
     1021 tcaccacgcg cggccagtcg atcagctgca gcgcttcgag ttcggtgaat tcatctgcga
     1081 caccggctgt ttttattgcc gcctgcgccg cttccacgcc cagcactgcc gccggatcaa
     1141 tgtgcgcgat gttgaggaac aagcgcgatg aaggcgagta cgggctgaat ttattcggct
     1201 ctgcgctgaa catggcgtgc atggggctga tcgcgattgc atggctgccg cgctgcgcgc
     1261 tttctgacgc aagtgtcgcg agcgcggaga agtcgcccac accgccgtcg cctatgcgcc
     1321 gcaaaccgta cacctgcgcg gccacgcccc acatcggcgg ggttgcctgc gggttagcct
     1381 gcgtgctggg ctgcagcgcg tgccaggcat cgtcgacggt gtagcagcgc ggcggcgcca
     1441 ccgcgagcgt tgtgcgctgc tcattgatca cgagcgtgtg atagcccggc tcggagatcg
     1501 gcgagagcaa tgcggtttcc cctttcggcg acgtgaaccg cccgtcgatg accgcgccgc
     1561 tttccagttc gatccgatat cgcgcgccgg atttcacggc cgccatcggc agggagatgc
     1621 cgcgatcgac ctccgcggtc atcaacggcg gcaacttgcg cccggacaat tcggcgtcga
     1681 gcgtcgctgc gctctgcttg agttgcgtgg gattcccgca gggcaggccg aggcgttcca
     1741 gcagcacttt cagcgtctct tccggcacgc gttggatctg cttgtgcgcg tcgcgccact
     1801 cgacctcgaa accggccttg gcggcgagcg cctcgatagc gctgggggtt ttatccggcg
     1861 tagccggggt attgatggt
//
LOCUS       DATGBK010000691         1776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_124181, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000691 DATGBK010000000
VERSION     DATGBK010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124181"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            438..>1776
                     /locus_tag="VKJ77_09825"
     CDS             438..>1776
                     /locus_tag="VKJ77_09825"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HMC45608.1"
                     /translation="MNKTTFHRAIATLAFALLACVCWVAAGMVSDRMVQQELTTSVRV
                     EQQMAASIVDNTAQIIASDLAMSRAIPATIAEMDMIQLALAQSRSSPEEISQTEPERR
                     TKLLAVPALAKLDNFLRNARGFTGLDYVWVVNSDGFCVASSNGLDSNSFVGADMRMRS
                     YIQKALLGAFNETYGVGRMSGDPGIFIATPVYRDGFLVGAVIAKVSVDRLRHWVARAG
                     TFVTDGNGVIVMAHESQLENRVLPDSPVLRMSRSERLDAYRRVDFRTLPLTNIGERVR
                     ADAPWLPPSLARSFFSSGDSNTPALYDERTGLNSGLAAHIVHPLPNWAEIVSNQRRDR
                     LLVFLTTLGVSLLAIVITVSYLRERRLHRATRHLANQLQSANALLSAEARHDALTGAL
                     SRRYFLDTLRREVDLARSGGVPLSVAIADLDYFKQVNDRFGHATGDRALEHFVR"
BASE COUNT          334 a          580 c          544 g          318 t
ORIGIN      
        1 tttgtttcac gcacaacctc agccggcgag tctgttgccg gttttctgaa gccaccgctc
       61 tcagcaccgc ccttggacta aacggctaac ccgtggcggg cgtggacacg cggttcagaa
      121 acgcgcgctc gcgccgataa gaacttgatg gccgcgagaa aacgtcgtcc aatcgaggcg
      181 tggcggcgtg ggccgggtga gagaaccgga gcgaacctgg gcaaatcgga ctgcgggact
      241 cttcgccagc gaacgaacaa agcatgaggt gcggctgacg ccggttccgg ccgcaagcaa
      301 cggcactcgg gcgaactacc gatgtgcgcc aggctgcgcc cggtaagatg ctcacatgcc
      361 ggtaaaacac tcataacaag ctcgtcgcgc gggttgtgcc acagtcccgc gccacagcca
      421 gacaggccag aggatcgatg aacaagacaa cctttcaccg cgccatcgcg acgctcgcct
      481 tcgcgttgct cgcatgcgtg tgctgggttg ccgccgggat ggtgtcggac cgaatggtac
      541 agcaagaact gaccacgtcg gtacgcgtgg agcagcaaat ggctgcgtcg atcgtcgaca
      601 acaccgcgca gatcattgcc agcgacctcg ccatgtcccg ggcgattccg gccactatcg
      661 ccgaaatgga catgatccag ctggcgctcg cccaatcccg cagctcccct gaagaaatca
      721 gccaaaccga gcccgagcgc cgaaccaaat tgctcgccgt gcccgcgctc gccaaactcg
      781 acaacttctt gcgaaacgcc cgcggcttca cgggcctcga ctacgtgtgg gtcgtcaata
      841 gcgatggttt ttgcgtagcg tcgagcaatg gccttgactc gaatagcttc gttggcgccg
      901 acatgcgcat gcgcagttat atccagaaag cgctgctggg tgcgttcaac gagacttacg
      961 gcgtcggcag gatgagcgga gaccccggca ttttcatcgc cacgccggtg tatcgcgacg
     1021 gcttcctggt gggcgcggta atcgcgaaag tgagtgtcga ccgcttgcgt cactgggtgg
     1081 cgcgcgcggg cacgttcgtc accgacggca acggcgtgat cgtcatggct cacgaaagcc
     1141 agctcgaaaa ccgcgtgctg ccggattcac ccgtgctgcg gatgtcccgg tcagagcggc
     1201 tggatgcgta tcggcgagtc gatttccgca cgctgccgct gaccaacatt ggagaacgcg
     1261 tgcgggcgga cgcgccctgg ctgccgcctt cgctcgcgcg ctcgtttttc tcctccggcg
     1321 acagcaacac gcccgctctc tacgacgagc gcaccggtct gaactcgggg cttgccgcgc
     1381 atatcgtcca tccgctgccg aactgggcgg aaattgtgag caatcaacgt cgcgacaggc
     1441 tgctggtatt cctgacgacg ctcggcgtca gcctgctggc cattgtgatc accgtgtcat
     1501 acctgcgcga acggcgcttg caccgggcca cccgccatct ggccaaccag ctgcagtcgg
     1561 ccaacgcact gctgtccgcc gaagcccggc acgacgcgtt gaccggagcg ttgtcgcgac
     1621 gttatttcct ggataccttg cgccgcgaag tcgacctcgc ccgctcgggc ggcgtgccgc
     1681 tgtcggttgc catcgccgac cttgattatt tcaagcaggt gaacgaccgc ttcggccacg
     1741 caaccggcga ccgcgcgctc gaacatttcg tgcgga
//
LOCUS       DATGBK010000692         3320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_216812, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000692 DATGBK010000000
VERSION     DATGBK010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216812"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..1215
                     /locus_tag="VKJ77_09830"
                     /pseudo
     CDS             1..1215
                     /locus_tag="VKJ77_09830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773687.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008115 - sarcosine oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0046653 - tetrahydrofolate metabolic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sarcosine oxidase subunit beta family protein"
     gene            1236..1538
                     /locus_tag="VKJ77_09835"
     CDS             1236..1538
                     /locus_tag="VKJ77_09835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sarcosine oxidase subunit delta"
                     /protein_id="HMC45609.1"
                     /translation="MLLIECPWCGPRAESEFSCGGEADIARPLDTEKLTDKEWGDYLF
                     MRKNPRGVHREQWMHAQGCRRWFMAQRDTVSYAFQGYETFARPLAVMEQKEEGQSK"
     gene            1535..>3320
                     /locus_tag="VKJ77_09840"
     CDS             1535..>3320
                     /locus_tag="VKJ77_09840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011354097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HMC45610.1"
                     /translation="MSQKDRLATGGRINRAIALTFTFNGKTYQGHQGDTLASALLANG
                     VHFVARSWKYHRPRGIVTADVAEPNAVVQLETGAYTVPNARATEIELYQGLVATSVNA
                     KPSIENDRMAVNQKIARFIPAGFYYKTFMWPRKFWPKYEEVIRDAAGLGKAPEHVDAD
                     RYDKCFAHCDVLVVGAGPSGLAAAHAAGLSGARVILVDDQPELGGSLLSYRSEIDGAP
                     GLKWAQKIEAELRKMPDVKILCRSTAFGYQDHNLVTITQRLTEHLPVSMRKGTRELLW
                     KVRAKRVILATGAQERPIVFGNNDLPGVMLASAVSSYLHRYAVLPGRNAVVFTNNDSG
                     YQCALDLKAAGAQVTVVDPRLADDKGALQGQAKRYGVKVLNGSVVTVAHGKLRVASVE
                     VSAYSNGTVGVKQADLSCDLLAVSGGWSPILHLFAQSGGKAHWHDEKLCFVPGKAMQA
                     ESSVGGCAGEFTLDRAIRFAVDAGVDAARAAGLIVARPTPVQVAEISEAPLMPLWLVG
                     GRELATRGPKQFIDYQNDVSAADIFLAAREGFESVEHVKRYTAMGFGTDQGKLGNING
                     MAILAQALNKTIPETGTTTFRPNYTPVTF"
BASE COUNT          668 a          968 c         1083 g          601 t
ORIGIN      
        1 cgcaacggca tgtcgtatca cgagaactgg gaacgccagt ggaaaagccc ggagcccaag
       61 caggaatacg acgtggtgat cgtcggcggc ggcgggcacg gtctcgcgac cgcctactat
      121 cttgccaagg aacatggcgt gcgcaacatc gccgtgctcg agaagggctg gattggcggc
      181 ggtaatacgg agcgtaacac gaccatcgtg cgttcgaact atctgtggga cgaatcggcg
      241 gcgctgtatg agaaggcgat gtagctgtgg gaagggctct cgcaagacct gaactacaac
      301 gtgatgttca gccaacgcgg cgtgatgaac ctcgcgcata cgctgcaaga tgttcgggat
      361 actgaacgtc gtgtgaacgc gaaccgcttg aatggcgtcg atgccgaatt cctcacgcct
      421 gaacagatca agcagatcga gccgaccatc aacctgaata gccgctatcc ggtgctcggt
      481 gcttctatcc agcggcgcgg cggcgtggcc cgtcatgatg cggtggcgtg gggttttgcg
      541 cgcggcgcgg atcaggccgg cgtggatatc gtccagaact gccaggtcac ggggattcgc
      601 cggaacggca gccaggtgat cggcgtggat accaccaagg ggtttatcaa ggccaagaag
      661 gtcgcgatcg tggctgccgg caacacctcc tcactcgccg atatggccgg catccgcctt
      721 cccctggaaa gccatccgtt gcaggcgctt gtgtccgaac ccatcaagcc ggtggtcaac
      781 acggtggtga tgtcgaacgc ggtgcacgcg tacatcagcc agtccgataa gggcgatctg
      841 gtgatcggcg ctggcgttga tcaatacacg ggcttcggtc agcgcggcag ttttcacatc
      901 atcgaaggga cgctggaggc gatcgtcgag atgttcccgg tgttctcgcg cgtgcgcatg
      961 aatcgtcagt ggggcgggat tgtggatgtg tcgccggatg cgtgcccgat catcagcaag
     1021 accgacgtga agggtttgta cttcaactgc ggctggggca cgggtggctt caaggcgacg
     1081 ccgggttccg gctgggccta cgcccacacc atcgcgcacg acgagcctca cgcgttgaac
     1141 gcgccgttct ccatcgaccg tttctacacg ggtcacctga tcgacgagca cggcgctgcg
     1201 gccgtcgccc actaaccggc atctggagat aaaacatgtt gctgattgaa tgcccctggt
     1261 gcgggccacg cgctgaaagc gaattctcgt gcggcggcga agccgatatc gcgcgcccgc
     1321 tcgacaccga aaagctcacc gacaaagaat ggggcgacta cctgttcatg cgcaagaacc
     1381 cgcgtggcgt gcatcgtgag caatggatgc acgcgcaagg ttgccgccgc tggttcatgg
     1441 cgcaacgcga taccgtgagc tatgcattcc agggctatga aacgttcgcc cgaccgctcg
     1501 ccgtgatgga acagaaagaa gaaggacaat ccaaatgagc cagaaagacc gactcgctac
     1561 gggcgggcgc atcaaccgcg cgatcgcgct cacgttcacg ttcaacggca agacgtacca
     1621 gggccaccag ggcgatacgc tcgcctcagc gctgctcgcg aacggcgtgc atttcgttgc
     1681 acgtagctgg aagtatcacc ggccgcgcgg catcgtcacg gccgatgtgg cagaacccaa
     1741 tgccgtcgtt cagctcgaaa ccggcgctta tacggtgccc aatgcgcgcg ccaccgagat
     1801 cgagttgtat caagggctgg tggccactag cgtgaatgcc aagccgagca tcgagaacga
     1861 tcgcatggcg gtgaaccaga agatcgcccg gtttatcccg gcgggcttct actacaagac
     1921 cttcatgtgg ccgcgcaagt tctggccgaa gtacgaagaa gtgatccgcg acgcagcggg
     1981 tctcggcaag gcaccggaac acgtggacgc ggatcgctac gacaagtgct tcgcgcattg
     2041 cgacgtgctc gtcgtcggcg ccggcccttc gggtctggct gcggcacacg cggcgggttt
     2101 gtcgggtgca cgcgtgattc tcgtcgatga ccagccggaa ctcggcggct cgctgctgtc
     2161 gtatcggtcg gaaatcgatg gcgcgccggg cttgaagtgg gcgcaaaaaa ttgaagctga
     2221 actgcgcaag atgccggatg tgaagatcct gtgccgcagc acggcgttcg gttatcagga
     2281 tcacaacctc gttacgatta cgcagcgctt gaccgagcat ttgccggtat cgatgcgcaa
     2341 aggcacgcgt gaactgctgt ggaaagtgcg cgcgaagcgg gtcattctcg ccacgggcgc
     2401 gcaggaacgg ccgattgtgt tcggtaacaa cgatctgccg ggagtgatgc tggcgtcggc
     2461 ggtttcgtcg tacttgcatc gctatgctgt gctgccggga cgcaacgcag tggtgttcac
     2521 gaacaacgac agcggctacc aatgcgcgct cgacctgaag gcggcaggcg cgcaggtgac
     2581 cgttgtagac ccgcgtctcg ccgacgacaa gggcgcgttg cagggccagg ccaaacgcta
     2641 tggcgtgaag gtcctgaatg gatcggtcgt cacggtggcg catggcaagt tgcgcgtggc
     2701 atcagttgaa gtcagcgcct attcgaacgg cacggtcggc gtgaagcaag ccgacctgtc
     2761 ttgcgacctg ctcgctgtat ccggcggctg gagccctatc ctgcacttgt tcgcgcagtc
     2821 gggcggcaag gcgcactggc atgacgaaaa actctgcttc gtacccggca aagcgatgca
     2881 ggccgagagc agcgtaggtg ggtgcgccgg cgaattcacg ctcgaccgtg cgatccgttt
     2941 cgcagtcgat gccggcgtgg acgctgcgcg tgccgcaggt ttgatcgtcg cgcgtccgac
     3001 acccgtgcaa gtggccgaga tcagcgaggc accgctcatg ccgttgtggc tggtcggtgg
     3061 ccgtgagctg gcgacgcggg gtcccaagca atttatcgat taccaaaacg acgtatccgc
     3121 cgcggatatt ttcctcgccg cgcgtgaagg gttcgagtcg gtcgagcacg tgaagcgcta
     3181 cacagcgatg ggcttcggca cggatcaagg caagctcggc aacatcaacg gcatggcgat
     3241 cctggctcag gcgctgaaca agacgatccc cgaaactggc actacgacct tccgtccgaa
     3301 ctacacgccg gttacgttcg
//
LOCUS       DATGBK010000693         2593 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147102, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000693 DATGBK010000000
VERSION     DATGBK010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147102"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1431
                     /locus_tag="VKJ77_09845"
     CDS             <1..1431
                     /locus_tag="VKJ77_09845"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC45611.1"
                     /translation="IRRSTIHGLLGENGAGKSTLVSLISGLTAPTEGTITFAGEQVQG
                     FDVKQMEALGVFLVTQEPMIVESMSVADNLMLGHWPVKRGLMRRVDQRALMANAVAAL
                     EGTGLDPRMPARTLSAVAKRKLNILRALHSGGKLLILDEPTAALTLADREHLFGFMRS
                     LKAQGVSFVFISHYNEEILGICDAVSVLRNGRLAGEMDDISSITSDNLSELVIGRDVP
                     LFYRDRAARHDHATSEGWGVEGLVAPNIAVDSFTIAPGEIVGFAGLPGSGAKEFGLSL
                     FGLNRAKQGHITHDNQRFGFAQHPEDAFARGIAYLSDDRHRDGLVGLQSIAQNITLSS
                     LGKVSRGGVIDASAEKQVVKRYFEHLRVKAVTPNVLLGTLSGGNQQKVCLGRVLATEP
                     KLLILDEPTRGIDVGVKEEVHRIIDALTREGLSVIVITSDLDEMVRMVDRVCIFVGGR
                     IEQEFTGADIDKDAILQAAFGTALAS"
     gene            1524..2510
                     /locus_tag="VKJ77_09850"
     CDS             1524..2510
                     /locus_tag="VKJ77_09850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006464860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45612.1"
                     /translation="MSPQPAAPVATNRRSKTGVQWLFQNVVWLWLAALIVIFGVLNPF
                     FFTLSNLQNVLVQATVLGLLALAVSLPLMVAEIDLSIASNMGFSAAIGAIVTTRLGLS
                     PAIGVPVGIAAATAIGFFNGLCVTRLRMVSLIQTLAVMIVLQGSLLAVTQGNTISDMP
                     NLYIWIGQTTIGNWPVMPVVFLVALLGMGFLLRKTVLGRSLYATGGNALAANSAGIRV
                     NRVKIIAFTLSGLLSGVAGYLLAAWQMAITSDQGEGFLLYAIAAPIIGGVSVFGGRGG
                     AAGILGGVLLLTVIHVGLAITEVPSFYVQMIGGILIFIAVAVDAIRVNFVSQ"
BASE COUNT          486 a          754 c          829 g          524 t
ORIGIN      
        1 atccggcgca gcacgatcca tggcctgctc ggcgaaaacg gcgcgggcaa gtcgacgctc
       61 gtcagcctga tctcgggcct caccgcgccg accgagggca ccattacgtt cgccggcgag
      121 caagtgcagg gtttcgacgt caaacagatg gaagcgctgg gcgtattcct ggtgacacag
      181 gagccgatga ttgtcgaatc gatgtcggtg gcggacaacc tcatgctcgg gcactggccg
      241 gtcaagcgcg ggttgatgag gagagtcgat cagcgcgcgc tgatggcgaa cgctgtcgcc
      301 gcgctcgaag gcaccgggct cgacccgcgc atgcccgcgc gcacgctgtc cgcggtcgcc
      361 aagcgcaagt tgaacattct gcgcgcgctg catagcgggg ggaagctcct gatcctcgac
      421 gaacccaccg ccgcgctgac gcttgccgac cgtgaacatc tgttcggctt catgcgcagc
      481 ctgaaggcgc agggcgtgag tttcgtgttc atctcgcact acaacgaaga gatccttggc
      541 atctgcgacg cggtgtcagt gctgcgcaat gggcgtcttg ccggcgagat ggacgatatt
      601 tcatcgatca cttcagacaa tttgtcggag ctcgtgatcg gtcgcgatgt cccgctgttt
      661 tatcgtgacc gggcagcgcg gcatgaccat gcaacgagcg aaggatgggg cgttgaagga
      721 ctggttgccc cgaacatagc ggtcgatagt ttcacgatcg cgcccggcga gattgtgggc
      781 ttcgcgggct tgcctggctc cggcgcaaag gaattcgggt tgtcgttgtt tggcctgaat
      841 cgcgcgaagc aagggcacat tacgcacgac aaccagcggt tcgggtttgc gcaacatccc
      901 gaagacgcgt tcgcacgtgg cattgcgtat ttatccgatg accggcaccg cgacggactc
      961 gtcggactcc aaagcattgc gcaaaatatc acgctatcga gtctcggcaa ggtttcgcgc
     1021 ggcggcgtga ttgacgcctc cgctgaaaag caggtcgtca aacgctactt tgaacacctt
     1081 cgcgtgaagg ccgtgacgcc caatgtgctg cttggcacgc taagcggcgg caatcagcag
     1141 aaggtctgtc tcggccgcgt gctggcaaca gaaccgaagc ttctgatcct cgatgaaccc
     1201 acgcgcggca tcgacgtggg cgtgaaggaa gaggtgcacc ggatcatcga tgcattgacg
     1261 cgcgaaggcc tgagcgtcat cgtcatcacg agcgacctgg acgagatggt gagaatggtc
     1321 gaccgcgtct gcatcttcgt gggtggtcgg atcgaacagg aatttaccgg cgcggacatc
     1381 gacaaggacg ccattctgca ggcggcgttc ggcaccgcgc ttgcaagttg agcgatcagg
     1441 aacagtcagg aacaaacagg agtcaggtca tgcaacccag gagcgagttc cccgcccacc
     1501 cgtcaccttc taacgctgca accatgtcgc cacaacccgc tgcacccgtt gccacgaacc
     1561 gccgctcgaa aaccggcgtg caatggctat tccagaacgt cgtgtggctg tggctggcgg
     1621 cgctgatcgt catattcggc gtgctgaatc cgttcttctt cacgctgtcc aacctgcaaa
     1681 acgtgctcgt tcaggcgacc gtgctcggcc tgctggcact cgctgtatcg ttgccgctga
     1741 tggtggcgga aatcgatctg tcgatagcga gcaacatggg cttttcggcg gccatcggcg
     1801 cgattgtgac aacacggctc ggcctgtctc cggcgatcgg cgtgccggtg gggattgcgg
     1861 cggcgacggc catcggcttc ttcaacggac tatgcgtcac gcgcctgcgg atggtctcgc
     1921 tgatccagac actggcggtc atgatcgtgc tgcaggggtc tctgcttgcg gtcacgcaag
     1981 gcaacacaat ctcggatatg ccgaacctgt acatctggat cgggcaaacc accatcggca
     2041 actggccggt gatgccggtc gtgttcctgg tcgcgctgct gggcatgggt ttcctgctgc
     2101 gtaagactgt gctgggccga agcctctatg ccaccggcgg caacgcgctg gcggcgaact
     2161 cggcgggtat ccgcgtcaat cgcgtgaaga tcattgcctt cacgctctcg ggattgttgt
     2221 cgggcgtggc gggctacctg cttgccgcat ggcaaatggc gattacatct gatcagggcg
     2281 aaggcttcct gttgtacgca attgccgcgc cgatcattgg cggcgtgagc gtgtttggcg
     2341 gacgcggtgg tgcggcgggc atcctcggcg gcgtgctgtt gctgacggtg attcacgtcg
     2401 gcctggcgat taccgaagtg ccatcgttct atgtgcagat gatcggcggc atcctgattt
     2461 ttatcgcggt ggcggtcgac gccatccggg tcaacttcgt ctcgcagtga tgaccgctgc
     2521 cgacgtttta cgaacacgac gtaactgaca tgacagaacc cagaaagtgc gagatgtata
     2581 tagacggccg ctt
//
LOCUS       DATGBK010000694         1828 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_332423, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000694 DATGBK010000000
VERSION     DATGBK010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332423"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            4..648
                     /gene="maiA"
                     /locus_tag="VKJ77_09855"
     CDS             4..648
                     /gene="maiA"
                     /locus_tag="VKJ77_09855"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009902749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016034 - maleylacetoacetate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HMC45613.1"
                     /translation="MKLYSYFRSSAAYRVRIALNLKGLAYEYAPIHLLRDGGQQLKPD
                     YRKLNPDGIVPTFIDGDNVLTQSLAIIEYLEETRPEPSLLPGTPLDRAFIRSVALQIA
                     CEIHPVDNLRVLKYLKHTLKVGDEAKDAWYRHWLESGFESLEKRLANDARVGKLCFGD
                     TPTLADLCLVPQVYNARRFNLDMSRYPTIERIADHAAQIDAFARAAPGQQPDAE"
     gene            645..1256
                     /locus_tag="VKJ77_09860"
     CDS             645..1256
                     /locus_tag="VKJ77_09860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003799097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE/ArgO family amino acid transporter"
                     /protein_id="HMC45614.1"
                     /translation="MTTAVFLSGAGLGASLIIAIGAQNAFVLRQGLKRRHVGWVVFIC
                     ALIDVLLIGLGIGGMGALIARAPVLLGVIRWAGAVFLFLYGLRAFHAAWKGPGHLHAE
                     NGESQTALKAVSTVLALSLLNPHVYLDTVVLLGGIGARYGWPGNAWFAAGAMCSSIIW
                     FTALGFGARLLQPLFEKDVSWRVLDVIVGIVMWWIAAALIVSR"
     gene            complement(1302..>1828)
                     /locus_tag="VKJ77_09865"
     CDS             complement(1302..>1828)
                     /locus_tag="VKJ77_09865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="signaling recognition particle receptor family
                     protein"
                     /protein_id="HMC45615.1"
                     /translation="DQSVLLAAGDTFRAAAREQLTVWGQRNNVTVVSQESGDAAAVIF
                     DAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIAKAQPDAPHEVLLVIDANT
                     GQNALAQVKSFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQ
                     PFSADEFADALLGS"
BASE COUNT          315 a          524 c          578 g          411 t
ORIGIN      
        1 cccatgaagc tatacagcta ttttcgtagc tcggcggcgt accgcgtccg gatcgcgctg
       61 aatctcaaag ggctcgccta tgagtacgcg ccgatccatc ttctgcgcga cggcgggcaa
      121 caactgaagc cggactatcg caagctgaat ccggacggga tcgtgcctac gtttatcgac
      181 ggtgacaacg tgctcacgca gtcgcttgcg atcatcgagt atctggaaga gacgcgtccc
      241 gagccatcgt tgttgccggg cacgccgttg gatcgcgcgt tcattcgttc ggtcgcgctt
      301 cagattgcgt gcgaaatcca tcccgtcgac aacttgcgtg tgctcaagta tctgaagcac
      361 acgctgaagg tcggcgatga agcgaaggac gcttggtacc ggcattggct ggaatcgggg
      421 ttcgagtcgc ttgaaaagcg gctcgcgaac gacgcgcgcg tgggcaagct gtgtttcggc
      481 gataccccca cgctcgcgga tctgtgcctc gtgccgcagg tgtacaacgc gcggcgcttt
      541 aacctcgata tgagccgtta tccgacgatc gaacgtatcg ccgatcacgc cgcgcaaatc
      601 gatgcgtttg cgcgcgccgc gcccgggcag caaccggacg cagaatgacg acagctgttt
      661 ttttatccgg cgccgggctt ggcgcaagtc tgattatcgc gattggtgct caaaacgctt
      721 ttgtcttgcg gcaaggcttg aagcggcggc acgtgggctg ggttgttttt atctgcgcgc
      781 tgatcgacgt attgctgatt gggttaggta ttggcggaat gggggcattg attgcgcgag
      841 cgccggtgct gcttggggtg attcgctggg cgggagcggt gttcctcttt ctctacggtc
      901 tgcgagcatt tcacgcggcg tggaaaggac cagggcattt acacgccgag aacggcgagt
      961 cacagacggc gttaaaagca gtatctacag tgctcgcttt atcgctgctg aatccgcacg
     1021 tttatctcga taccgtcgta ctgctcggtg gcattggtgc acggtacggc tggccgggga
     1081 atgcgtggtt tgccgcaggg gcaatgtgtt cgtcgatcat ctggttcacc gctctcgggt
     1141 ttggcgctcg cttgctccag cccctgtttg agaaagatgt ctcgtggaga gtgctcgatg
     1201 tgatcgtggg gattgtgatg tggtggattg ctgcggcgct gatcgtgtcc cggtagtgcg
     1261 cgcgaccgcg gtctggctga atgccaggcc gcagtgcacg tttaacttcc gagcaatgcg
     1321 tctgcaaatt cgtcggcgct gaacggctgc aagtcctcga ctttctcgcc cacgccaatg
     1381 aagtacaccg gaatcggccg ctgccgcgcg attgccgcga gaatgccgcc ctttgccgtg
     1441 ccatcgagct tggtcacgat caaacccgtc aagcccagcg catcgtcgaa agacttcacc
     1501 tgggcgagtg cgttctggcc cgtgtttgcg tcgatgacca gcaacacttc gtgcggcgcg
     1561 tctggttgtg cctttgcaat cacgcgcttc accttgcgca gctcttccat caagtgaagc
     1621 tgcgtaggca ggcggcccgc cgtgtcggcc atcatcacgt cgatcttgcg ggcgcgcgcg
     1681 gcgccgaccg catcgaagat cacggcggct gcatcaccgc tttcctgcga taccaccgtc
     1741 acattgttgc gttggcccca gaccgtgagc tgttcgcgcg ccgcggcacg gaaggtgtcg
     1801 cctgcagcga gcagcacgga ttggtcga
//
LOCUS       DATGBK010000695         3629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_124216, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000695 DATGBK010000000
VERSION     DATGBK010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3629
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124216"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1196
                     /locus_tag="VKJ77_09870"
     CDS             <1..1196
                     /locus_tag="VKJ77_09870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45616.1"
                     /translation="RQRVMIAAALIMEPALLIADEPTTALDATTQTLILDLIRKLQTR
                     KRMAVMFITHDFGVVAKIADDVLVLQHGQTVESGLAQDVLGAPSHPYTRQLIAAIPHG
                     NAAAYARAADAPVVIEAQSLMKTYRTGGGLFSKARRVDAVHDINFKIRRGETLGLVGE
                     SGSGKSSVGRCIAGLQPIDSGRILFNGRNVALRDERGAQTRGRIQMVFQDPQASLNPR
                     HRIGASIMSGPLAQGVSPKEAHKRTEELLSLVGLQPEAAERYPHEFSGGQRQRIGIAR
                     ALAVRPDLLIADEPVSALDVSVQAQVLELFAMVRERFNLSMLFITHDLRVAAQMCDHI
                     AVMKKGVMVEYGTAAQIIRAPRDEYTKKLIEAVPDFSSLIARRPAANVSAAMNVDVNT
                     AEGGR"
     gene            1193..2134
                     /locus_tag="VKJ77_09875"
     CDS             1193..2134
                     /locus_tag="VKJ77_09875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase A"
                     /protein_id="HMC45617.1"
                     /translation="MKPPCVALVSGVIDMRFLMPVFETIVPGIDMRITDALGERGEIE
                     LAVCWAPPQGLLASMPNLRLIQSIGAGVDHILKDSTLPPKPVCRIVDPDMTAGMTAYV
                     CWAVINRQRRFPAYCAHSAAGVWQEEAIEPPSGHCVGIAGLGRLGTALAQALVTIGYR
                     VQGWSRLPKTDPLPGVTHFHGKAGLEDFLAQTDTLVCLLPLTDETTGFLGRETFGLLP
                     PGAHVINVGRGAHLVERDLLDALASGHLSGATLDTNAVEPLPQTHPFWRHPQILVTPH
                     IASRTSPMTIARQTLDNYRHVCEGRTPPGQIDPRHGY"
     gene            2223..2900
                     /locus_tag="VKJ77_09880"
     CDS             2223..2900
                     /locus_tag="VKJ77_09880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016487046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC45618.1"
                     /translation="MKYPIEDVLRANLGASVYGTLRESLATGRFKPDARLRIRELAEQ
                     LGTSVTPARDAILQLASEGALVLRSPRDIRVPVLSVERYLEIRAIRVELEGLAAAAAA
                     RAVSPVALAELESLVDLNKKAIEDGDLVTALLYNQRFHLGLAKAAGMPTLEELIDQLW
                     VRVAPLIAASYGAFSDRSRVGHHESVLRALRDRDSDGARRAIREDILEGGEAMLACIK
                     SFTIFDD"
     gene            3020..>3629
                     /locus_tag="VKJ77_09885"
     CDS             3020..>3629
                     /locus_tag="VKJ77_09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015867966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HMC45619.1"
                     /translation="MKVIYSESHLGHDPQFFVVRGQIRRSNEQPERATTLLKAAERDG
                     HAVVLVDDFGAAPRAAVHSARYLHFLETVFDRWSELDDASPDEVVPNIHPFPGEPCTY
                     PEHLVGQVGFHLGDMACAVGPATWEAATGAAHCATHAAELVMAGERAVYALCRPPGHH
                     AYVERANGFCYLNNTAIAAQHLRRQHTRVAVLDIDVHHGNGTQ"
BASE COUNT          681 a         1090 c         1155 g          703 t
ORIGIN      
        1 agcgtcaacg cgtgatgatt gcggcagcgc tgattatgga gccggcactg ctgatcgccg
       61 atgaaccgac gaccgcgctc gatgccacca cgcagacgct gattctcgac ctgatccgca
      121 agctgcagac gcgcaagcgc atggcagtga tgttcatcac ccacgatttc ggcgtggtgg
      181 caaagatcgc cgatgacgtc ctcgtcctgc agcatggcca gaccgttgaa agcggcctgg
      241 cgcaggacgt gctcggcgcg ccgagtcatc cgtacacgcg tcagttgatt gcggccattc
      301 cgcacggcaa cgcggcggcg tacgcgcgcg cggcggacgc gccggtcgtg atcgaggcgc
      361 aatcgctgat gaaaacctat cgcaccggtg gcggcctgtt cagcaaggct cgtcgcgtcg
      421 atgcagtcca cgacatcaac ttcaagatcc ggcgcggcga aacgctcggg ctggtcggcg
      481 aatccggctc cggaaagtcg agcgtcggcc ggtgtatcgc cggtttgcag ccgatcgatt
      541 ccgggcgcat cttgttcaac ggccgtaacg tggcgctgcg cgacgagcgg ggcgcacaga
      601 cgcgcgggcg tatccagatg gtgttccagg atccgcaggc atcgttgaat ccgcgtcaca
      661 ggatcggggc atcgatcatg tccgggcccc tcgctcaagg tgtttcgccg aaggaggcgc
      721 acaagcggac ggaggaactg ttgagtctcg tcgggctgca acccgaggcc gctgagcggt
      781 atccgcacga gttttcgggt ggacagcggc agcggatcgg gattgcccgc gcgctggcgg
      841 tacggccgga cttgctgatc gccgatgaac ccgtgtccgc gctcgatgtc tccgtgcagg
      901 cgcaagtgct cgaattgttt gccatggtcc gcgagcgctt caacctgagc atgttgttca
      961 tcacgcacga tttgcgcgtc gccgcgcaga tgtgcgacca catcgcggtg atgaagaagg
     1021 gcgtgatggt cgagtacgga actgccgcac agatcatccg cgcgccgcgc gacgagtaca
     1081 cgaagaagct gatcgaggct gtgccggatt tctcgtcgct gatcgcacgg cgtccagccg
     1141 ccaatgtgag cgctgctatg aacgttgatg tgaacactgc cgagggcggc cgatgaaacc
     1201 gccgtgcgtt gcgctcgtca gcggcgtgat cgacatgcgc tttctcatgc ctgtgttcga
     1261 gacaatcgtg cctggcatcg acatgcggat aacggatgca ctcggtgaac gcggcgaaat
     1321 agagcttgcc gtgtgctggg cgccaccgca gggtttgctg gcatcgatgc cgaatcttcg
     1381 gctgattcaa tcgattggcg caggtgtcga tcacattctg aaagacagta cgttaccgcc
     1441 gaagcccgtg tgccggatcg tcgatcccga catgacagcc ggcatgaccg cgtatgtctg
     1501 ttgggcggtc atcaaccggc aacggcggtt cccggcgtat tgtgcgcaca gcgccgcagg
     1561 cgtgtggcag gaagaggcaa tagagccgcc gagcggacat tgcgtgggaa ttgcgggact
     1621 tggccggctg ggaacggcgc tcgcgcaggc gctggtcacg atcggttatc gcgttcaggg
     1681 ttggagcagg ttaccgaaga cggacccgct gcctggcgtg acgcactttc atggcaaggc
     1741 gggactcgaa gacttccttg cccagaccga tacgctcgtc tgcctgttgc cgctgaccga
     1801 tgaaaccacg ggttttcttg gccgcgaaac gttcgggctg ttgcctccgg gcgcgcatgt
     1861 gatcaatgtg gggcggggtg cgcatctggt cgagcgcgat ttacttgatg ccctggcaag
     1921 cggtcatctg tcaggcgcca cgctcgatac caatgccgtc gaacccttgc cgcaaacgca
     1981 tccgttctgg cggcatccac agattctggt gacgccgcac attgcgagcc gcacgtcgcc
     2041 catgaccatc gcacgccaga cattggataa ctaccggcac gtctgtgaag ggcgaacacc
     2101 gcccggccag atcgatcctc gacatggtta ttgaacggcc tcttcgggat tgtccgggcg
     2161 cagcctgtga gtttcgaatg atataatgca tcatatatat tttatatgta atccggagtc
     2221 ctgtgaaata tcccatcgaa gacgtcctgc gtgcaaatct cggcgcgtcg gtgtacggaa
     2281 cgctgcgtga atcgcttgcc acaggacgtt tcaagccaga cgccagattg cgtatccgcg
     2341 aactggcgga gcagttgggt acaagcgtta cgcctgcccg cgacgccatt ctccagttgg
     2401 cgagtgaagg cgcgctggtg ttgcgctcgc cgcgcgatat ccgggttccg gtcctgtccg
     2461 tcgagcgtta tctggagatc cgtgcgatcc gtgtcgaact cgaaggactc gccgcggccg
     2521 ccgccgcacg agcagtcagc ccggttgcgc tcgcggaact cgaaagtctc gtggacctga
     2581 acaagaaagc aatcgaagac ggagacctgg tcaccgcatt gctttataac cagcgctttc
     2641 acctcgggct ggccaaggca gccggcatgc cgacgctcga agagctcatc gaccagttgt
     2701 gggtgcgtgt ggcaccgctg atcgcggcat cctatggggc attctctgat cgctcacgcg
     2761 tcggccatca cgaaagcgtt ctgcgggccc tgcgtgaccg cgacagcgat ggtgcccgcc
     2821 gcgcgattcg tgaagatatc ctcgaaggcg gcgaggccat gcttgcctgt atcaaaagct
     2881 tcacgatctt cgacgactga gcggcgttgg gcggtcgaat cgcctcaaag cacagattaa
     2941 aacatgttgc atcatattta ttagcatggt cctattggct gtcggttgag tcctttctca
     3001 aagccaaagg gaaatgtcga tgaaggtcat ctacagcgaa agtcacctcg ggcacgaccc
     3061 gcagttcttc gtggtgcgtg gacagatccg ccggagcaac gagcagccgg agcgtgcgac
     3121 tacgttgctc aaggcggcgg agcgtgacgg ccatgcggtc gtcctcgtcg atgatttcgg
     3181 cgccgcgccg cgcgccgccg tgcattccgc acgttacttg cactttctcg aaaccgtgtt
     3241 cgaccgctgg tccgaactcg acgacgcatc gcccgatgaa gtcgtcccca acattcatcc
     3301 gttccccggc gagccctgca cgtaccccga gcatctcgtc gggcaagtgg gttttcatct
     3361 cggagacatg gcgtgcgcgg tcggccccgc aacctgggaa gccgcgaccg gcgcggcgca
     3421 ttgcgctacg cacgccgccg agctggtgat ggccggcgag cgggcagtct atgcgctgtg
     3481 tcgcccaccc ggtcatcacg cgtatgtgga gcgagcgaat ggcttctgct atctgaataa
     3541 caccgcgatc gcggcgcagc atctgcggcg gcaacacaca cgcgtggccg tgctagatat
     3601 cgacgtgcat cacggcaacg gcacacaag
//
LOCUS       DATGBK010000696         1971 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_32141, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000696 DATGBK010000000
VERSION     DATGBK010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32141"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..746)
                     /locus_tag="VKJ77_09890"
     CDS             complement(<1..746)
                     /locus_tag="VKJ77_09890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC45620.1"
                     /translation="MATPQFHSLRIRDVRPETADAVTVSFDVPETLRDAFRFTQGQFV
                     TLKTHIDGEETRRSYSICVGVTDYDRDGELRIGIKRVRGGRFSNFAFDTLKPGHEIEV
                     MTPDGRFFTHLNADHVKHYVAFSGGSGITPVLAIIKTTLESEPTSRFTLIYGNRSVDA
                     IMFAEELEDLKNRFMSRFSLYHVLSDDLQDVELFNGVLNQEKCAAFLEALVPADAIDE
                     AFICGPGPMMDAAEAALKSAGVPPKQVHVER"
     gene            complement(755..1282)
                     /gene="paaD"
                     /locus_tag="VKJ77_09895"
     CDS             complement(755..1282)
                     /gene="paaD"
                     /locus_tag="VKJ77_09895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaD"
                     /protein_id="HMC45621.1"
                     /translation="MTAAEASLDRVWEVLDAVPDPEIPVVSIRELGILRDVRRAADDT
                     LEIVITPTYSGCPAMYQIAEDIGAALNDAGFKNHRIETVLAPAWTTDWMTDAARDKLR
                     QYGIAPPMGNCGSNEHAPQERPIRFVPRVVDKPACPRCGSSHTERLAQFGSTACKALY
                     RCMDCREPFDYFKPY"
     gene            complement(1291..>1971)
                     /gene="paaC"
                     /locus_tag="VKJ77_09900"
     CDS             complement(1291..>1971)
                     /gene="paaC"
                     /locus_tag="VKJ77_09900"
                     /EC_number="1.14.13.149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010124 - phenylacetate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-phenylacetyl-CoA epoxidase subunit PaaC"
                     /protein_id="HMC45622.1"
                     /translation="ANISLDLIGQARLLYSHAATLDAELYGTKKTEDDYAYFRNERDF
                     RNYTLTELPHAGPLSGTARSDRDYAVTVVRNFLYSTLMAHLWTALTQSADAQLAAIAS
                     KSIKETRYHLNHASDWLLRFGDGTEESHRRAQTAVDYLMPYTREFFSTDDVETSIADA
                     GIGPLTTDLETAWREDVDATLAQATLQKPADAKHVTTGKLGEHSEHMGFLLAELQSLA
                     RQHPGATW"
BASE COUNT          371 a          574 c          611 g          415 t
ORIGIN      
        1 cgctcgacgt gaacctgctt cggcggcacg cctgcgcttt tcagcgcggc ttcggcggcg
       61 tccatcatcg ggccggggcc gcaaataaag gcttcgtcga tcgcatcggc gggaacaagc
      121 gcttccagga atgccgcgca cttttcctgg ttcagcacgc cgttgaacaa ctcgacatcc
      181 tgcaaatcgt ccgatagcac gtggtacagc gagaaccggc tcatgaagcg gttcttcagg
      241 tcttccagtt cttcggcaaa catgatcgcg tccacgctgc gattgccgta gatcagcgta
      301 aaacggctgg tcggttcgct ttccagcgtc gtcttgatga tcgcgagcac cggtgtgatg
      361 cccgaaccgc ccgagaacgc cacgtaatgc ttcacgtggt cggcgttcag gtgtgtgaaa
      421 aagcggccat cgggcgtcat gacttcaatt tcatggccgg gcttcagcgt atcgaaggcg
      481 aagttcgaga agcggccacc tcgcacgcgc ttgatgccga tacgcaattc accatcgcgg
      541 tcgtaatcgg tcacaccgac gcaaattgaa tatgagcgcc gcgtttcctc gccgtcgata
      601 tgcgtcttca acgtgacgaa ctggccttgc gtaaaacgga atgcgtcacg cagggtttcg
      661 gggacatcga aggacaccgt gacggcatcg gcggtttcgg gacggacatc gcggatacgc
      721 agcgagtgga attgcggagt cgccatggtc attgtcagta cggtttgaag tagtcgaatg
      781 gctcgcggca atccatgcag cgatacagcg ccttgcacgc cgtcgagcca aattgggcga
      841 gacgttcggt atgcgatgaa ccgcagcgcg ggcaggcggg tttgtccacg acacgcggca
      901 cgaagcggat gggccgttct tgcggcgcgt gttcgtttga accgcaattg cccattggcg
      961 gagcgatgcc gtattgcctg agcttgtcgc gggctgcgtc cgtcatccag tcggtggtcc
     1021 atgccggcgc cagaactgtt tcgatgcgat ggttcttgaa gcccgcgtca ttcaatgccg
     1081 cgccaatgtc ttcggcgatc tgatacatcg ccgggcagcc cgaatacgtg ggcgtaatga
     1141 cgatttccaa tgtgtcgtcg gcggcgcggc ggacatcgcg gagaatgcct agctcacgta
     1201 tggataccac cggaatttcc gggtctggca cggcgtccag gacttcccat acgcgatcga
     1261 gcgaggcttc tgcggcggtc atcgtcgagt tcaccacgtt gcgcccggat gctgccgcgc
     1321 gagactctgc aattcggcga gcaggaaacc catgtgttcg gagtgctcgc caagcttgcc
     1381 agtggtcacg tgtttggcgt cggcgggctt ttgcagcgtg gcctgagcga gcgttgcatc
     1441 cacatcttca cgccacgcgg tttccagatc cgtagtcagc ggaccgatac ccgcatcggc
     1501 gatgctcgtt tccacgtcat cggtgctgaa aaactcgcgc gtgtagggca tcaggtaatc
     1561 caccgcggtc tgagcccggc gatgcgattc ctcggtgcca tcgccaaaac gcagcagcca
     1621 gtcgctcgcg tgattcaggt gatagcgcgt ttccttgatc gatttcgacg cgattgccgc
     1681 aagttgcgcg tcggccgatt gcgtgagcgc tgtccagaga tgcgccatca gcgtcgaata
     1741 gaggaagttg cgcaccaccg tcaccgcgta gtcgcgatcc gaacgcgccg tgcccgacag
     1801 cggacccgcg tgcggcaact cggtcagcgt gtaattgcgg aaatcgcgtt cgttgcggaa
     1861 atacgcgtag tcatcttcgg ttttcttcgt gccgtaaagc tcggcatcga gcgtggccgc
     1921 gtgcgagtaa agcaatctcg cctggccgat cagatcgagg ctgatattgg c
//
LOCUS       DATGBK010000697         1561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_263274, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000697 DATGBK010000000
VERSION     DATGBK010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263274"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1495)
                     /locus_tag="VKJ77_09905"
     CDS             complement(<1..1495)
                     /locus_tag="VKJ77_09905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC45623.1"
                     /translation="MRELDRSRRGFLKASAIAGLTVIIAPLGSRAFAALFEEKILTPI
                     QWDTASGSAKFRIDGIAKVTGSKVFARDVRATDMPHWPNQQSHAFMLRTTQADRIYNG
                     FDLSLLGDDLQPDRIVTAAELARDGLAFPAFYGDDMLLPPGKTPAYLGQAVAMLIYHD
                     FARYRFAKDKLQFRDETIRYGEKTGPLERDPWGTFRFVRVGGATAYDEDTFSSLKDTM
                     LFPSAMRKHEPVWAAGQQDGKLDEQGMFHAQNMQGELDHPPTDWLVLERNYSTQSIDT
                     AALEPDNTNCWYDAATQSLHMVVPTQGPHEVAESAAGMAAKSRFPVKNLFVHPVYTVG
                     YGSKDHFTVPFYGLVAAMYGDGRPVRLAFDRYEQFQTSIKRHASKMRYRIAIDKKTNL
                     LQSFKAELEVDGGGRCNFSPSVAMVGASAAQSIYYFPKSDLTGVAIASRAIDAGSARG
                     YGTLQTMAATEMLIDEIATQLGLDAIDLRLKNALRSGMKNTQGAIPAG"
BASE COUNT          291 a          481 c          458 g          331 t
ORIGIN      
        1 cgccggcggg aatcgcaccc tgggtatttt tcatgcctga gcgcagcgcg ttcttcagcc
       61 gcaagtcgat cgcatcgagt ccaagctgcg tcgcaatttc atcgatcagc atctcggtcg
      121 ccgccatggt ctgcagcgtg ccgtaaccgc gcgcggaacc cgcgtcgatc gcgcgtgaag
      181 cgatcgccac gccggtcagg tcgctcttgg ggaagtagta gatcgactgc gcggccgatg
      241 ctcccaccat ggcgaccgat ggcgaaaagt tgcagcgccc gccgccgtcg acttcgagct
      301 cggccttgaa cgactgcagg aggttcgttt tcttatcaat cgcaattcga taacgcatct
      361 tcgacgcatg gcgttttatc gatgtctgga attgctcata gcggtcaaac gcaagacgta
      421 ccggacggcc gtcgccgtac atggccgcca ctagtccgta gaacggaacc gtgaagtgat
      481 ccttcgaccc gtagccgacc gtatagaccg gatgcacgaa caggttcttc accgggaagc
      541 gactcttcgc cgccatgccg gcagcgcttt cggcgacctc gtgcggccct tgcgtcggga
      601 cgaccatgtg cagcgattgc gttgccgcgt cgtaccagca gttcgtgttg tcgggttcga
      661 gcgcggcggt atcgatggat tgcgtactgt aattgcgctc cagcacaagc cagtccgtgg
      721 gcggatggtc aagttcgccc tgcatgtttt gcgcatggaa cataccctgc tcgtccagct
      781 tgccgtcctg ctggcccgcc gcccacacag gctcgtgctt gcgcatcgcg cttgggaaca
      841 gcatggtgtc cttcaagctc gagaacgtgt cctcgtcata ggccgtcgca ccgccgacgc
      901 gcacaaagcg gaacgtgccc cacggatcgc gttcaagcgg cccggtcttc tcgccgtagc
      961 ggatggtttc atcgcggaac tggagcttgt ctttggcgaa ccggtagcgt gcgaaatcgt
     1021 gatagatcag catggccacg gcctggccta gataagctgg cgtcttgccc ggcggcagca
     1081 acatgtcgtc gccgtagaaa gcgggaaatg cgagcccgtc gcgtgcaagc tccgcggccg
     1141 tgacgatccg gtccggctga aggtcgtcgc caagcaagct caggtcaaaa ccgttatata
     1201 tgcggtcagc ctgcgtcgtt cgcaacatga atgcgtgcga ttgctggttc ggccagtgcg
     1261 gcatgtcagt ggcgcgcacg tctcttgcaa ataccttcga gccggtgacc ttcgcgatcc
     1321 cgtcgatacg aaacttcgcg ctgccgctcg ccgtatccca ctgaatcggc gtcaggatct
     1381 tttcttcaaa taacgcagcg aatgcgcgac tgccgagcgg cgcaataatg acagtcagtc
     1441 ccgcgattgc actcgccttc aaaaaaccgc gacgcgatcg gtcgagttct ctcatagtcc
     1501 actccttgaa tgatcggctg agagcctcaa gccacactgc ttcgggtttc ggattttatt
     1561 t
//
LOCUS       DATGBK010000698         1559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_100937, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000698 DATGBK010000000
VERSION     DATGBK010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100937"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            267..1031
                     /locus_tag="VKJ77_09910"
     CDS             267..1031
                     /locus_tag="VKJ77_09910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012425914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC45624.1"
                     /translation="MQTPEIKAGPKESEGVAVIDRACAILFAFKPDDGSLTLAELAVR
                     TGLYKSTLLRLAGALIQHRLLLRLDDGRYQLGAATFMLGALYQRSLNLGDILVPLMRE
                     LAEISGESVSFYVRDEAVRVCLHRVDSTHAVRYHVREGDVLPLESGSGGLALLAFGGA
                     EGEVFQRIRDDFYCVSMGERDRETAGMSMPVFGVRQIVRGVLTLAGPSSRIDQAFVAR
                     NLGALFDCAARATDALGGDSRALRNAQRHTAAVQGK"
     gene            complement(1019..>1559)
                     /locus_tag="VKJ77_09915"
     CDS             complement(1019..>1559)
                     /locus_tag="VKJ77_09915"
                     /EC_number="4.1.3.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012425915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="citryl-CoA lyase"
                     /protein_id="HMC45625.1"
                     /translation="GAMASAINALDDVHGGAGQQAVELYDAIVALEDAGTTLSDAVAQ
                     GVDAFIETKGKYLPGFGHRFHPVDPRAVKLLALVDASVEQGAISGRYAAVARAIEALL
                     QQRKNKPVPMNIDGATAVIYAELGFAPELARGVFCLSRAVGILSHAWEQRGRNERNKG
                     PMPRQMAYKYTGKPERHLP"
BASE COUNT          284 a          491 c          454 g          330 t
ORIGIN      
        1 ttcgacacgt aaatgctgcc acttattcca acgctccgca cgccgcgcta tttcgctaaa
       61 aaagcaacta acaatctgcc ccgccacgcg cctgcaaatt tgtcatttgc cagcgccggg
      121 tcgaagcact tttgaaattc atcaaagcag gttccgcagg gaagggggct tccggcctct
      181 tatatgaacc gtatgagacg cgcccggcat cgcgtaaaat tgctcttcga tacaaacaca
      241 agacgcttcg cccacgtctc ttaaccatgc aaacgcccga gatcaaagct ggcccgaaag
      301 agagcgaagg cgttgcggtc atcgaccgtg cttgcgcgat cttgttcgcg ttcaagccgg
      361 acgatgggtc gctgacgctc gccgaactcg cggtgcgtac cgggctctat aaaagcacgt
      421 tgcttcgcct cgcaggcgca ctgatccagc accgcttgct gctgcgtctc gacgacggcc
      481 gctatcagct cggcgcagcc actttcatgc ttggcgcttt gtatcaacgc agtttgaatc
      541 tcggcgatat cctcgtcccg ctgatgcgcg agctcgccga aatcagcggc gaaagcgtgt
      601 cgttctatgt gcgtgatgaa gccgtgcgcg tgtgtttgca tcgtgtggat tcgacgcatg
      661 cggtgcgtta tcacgtgcgt gaaggcgatg tgctgccgtt ggaaagcggt tcgggaggtt
      721 tggcgctgct tgcgttcggc ggcgctgaag gcgaagtgtt ccagcgcatt cgcgacgact
      781 tttactgcgt ctccatgggc gaacgtgacc gcgagacagc cggcatgtcg atgcccgtct
      841 tcggcgtgcg ccagatcgtg cgcggcgtgt tgacgctcgc gggtccgagc tcacggatcg
      901 atcaggcgtt cgtcgcgcgc aaccttggcg cgttgttcga ctgcgccgcc cgtgcaaccg
      961 atgcactcgg cggcgactcg cgcgcgttgc gcaacgcgca acgccacacg gctgcggttc
     1021 aaggcaaatg acgctcgggc ttgcccgtat atttgtaggc catctgacgc ggcatcggac
     1081 ctttattgcg ctcgttgcgc ccgcgttgtt cccacgcatg cgacaggatc ccgaccgcac
     1141 gcgataagca aaacacccca cgcgccaact ccggcgcgaa gccgagttcc gcgtagatca
     1201 cggccgttgc gccgtcgatg ttcatcggca cgggcttgtt tttccgctgc tgcagtaacg
     1261 cttcaatagc gcgtgcgacc gccgcgtatc gtccgctgat tgcgccttgt tcgacgctgg
     1321 catcgactaa tgccagcagc ttgaccgcac gcggatcgac gggatgaaag cgatgcccga
     1381 agcccggcag atacttgccc ttcgtttcga taaacgcatc cacgccttgc gccacggcat
     1441 cgcttaatgt ggtgcccgca tcttcgagcg cgacgattgc atcgtatagc tcgactgctt
     1501 gctgacccgc gccgccgtgg acatcgtcga gcgcattgat cgccgacgcc atcgcgcca
//
LOCUS       DATGBK010000699         1622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_55055, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000699 DATGBK010000000
VERSION     DATGBK010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55055"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..323)
                     /locus_tag="VKJ77_09920"
     CDS             complement(<1..323)
                     /locus_tag="VKJ77_09920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013952928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC45626.1"
                     /translation="MNRLTGKVAIVTGASAGIGRATAKLFAAEGAKVVVAARRAAELE
                     TLVEEIKADGGETVYLAGDVQSEDYAKAVVALAIETFGRLDVAYNNAGTLGEMGPTTS
                     VSLEG"
     gene            506..1414
                     /locus_tag="VKJ77_09925"
     CDS             506..1414
                     /locus_tag="VKJ77_09925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018432214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45627.1"
                     /translation="MDRLRAYEVFVAVVKRGSFTRAADALDTSPANVTRYIVELEAHL
                     GTRLLNRTSRRLSLTSGGEALYERCVAILDDVAETEGLVSSSTAEPRGRLRINAPLSF
                     GVLQLAPLWPEFMRRYPDVELDVSLVDRVVDIVDEGVDLAIRISRAGSMGNAARKLAA
                     SRNVLCASPAYLAERRLPERPSDLGEHRCIGYTYAASGDEWQFLDVDEKPHNVRVNCH
                     MHTNNGDTARSAALAGLGVIWQPTFIIGDDLRAGRLVALMPAFHMADIDVLAMYPSRR
                     HLSSRVRVMIDYLVEVLGGVAPWDRS"
BASE COUNT          274 a          478 c          522 g          348 t
ORIGIN      
        1 aacccttcca gcgacacgga tgtggtcggt cccatttcgc ctagcgtgcc ggcgttgtta
       61 taagcgacgt cgagccggcc gaatgtttcg atcgccagcg ccacgacggc ctttgcatag
      121 tcttccgatt gcacgtcgcc cgcgagataa acggtttcgc cgccatccgc tttgatctct
      181 tctaccagcg tttccagttc ggctgcgcgg cgggcggcga cgaccacttt tgcgccttcc
      241 gctgcgaaca acttggccgt ggcgcggccg atgccggcgc ttgcgcccgt gacgatggca
      301 acctttcctg tcagtcgatt catgatgttt ctccgttctg ttcagcttgt ccggcgccca
      361 atgccccggt ccatgtgacg cactgtaagc gcagcggaag cttgcgaaca ggcacggaaa
      421 atggtcttat cgttcagctt ttgtgaatct tgaaccggca ttccgcttaa ccgctcgact
      481 gccccacctg caccggagac gttcaatgga ccgcttgcgc gcttatgagg tcttcgtggc
      541 cgtggtcaag cgcggcagct tcacgcgcgc cgccgatgcg cttgatacgt cgccggctaa
      601 cgtgacgcgg tatatcgtcg aactggaggc gcatctgggg acgcggctgc tgaaccggac
      661 gtcgcggagg ttgtcgctga catcgggcgg cgaggcgctt tacgagcgtt gcgtggcaat
      721 tctcgatgac gtggccgaga cggaggggtt ggtgtcgtcg tcgaccgccg agccgcgcgg
      781 acggctgcgc atcaacgcgc cgctgagctt tggcgtgttg cagcttgcgc cgttatggcc
      841 ggagttcatg cggcggtatc ccgatgtgga actggatgtc tcgctggtcg accgggtggt
      901 ggatattgtc gatgaaggcg ttgaccttgc cattcgaatt tcgcgcgcgg ggtcgatggg
      961 caatgcagcg cgcaagctcg ccgcgtcgcg caatgtgctg tgcgcgtcgc cggcgtattt
     1021 agcggagcgg cgcttgccag agcggccttc ggatctgggc gagcatcgct gtattggtta
     1081 tacgtatgcc gcgagcggtg acgagtggca gtttcttgac gtcgatgaga agccgcacaa
     1141 cgttcgggtg aattgccaca tgcatacgaa caacggcgat accgcgcgct cggcggcgct
     1201 tgccgggctg ggggtgatct ggcagccgac cttcatcatt ggcgatgacc tgcgagcggg
     1261 gcggctggtg gcgctgatgc cggcgtttca catggcggat atcgatgtgc tcgcgatgta
     1321 tcctagccgg aggcatttga gctcacgcgt gagggtgatg atcgattacc tcgttgaggt
     1381 tttaggaggg gtggcgccgt gggatagaag ctgagaactc ctcgtaacca agtaaactcc
     1441 actcaagccc cgcattcttt ccaggagata aaccgcatgc aatccccgtg gcgcaccatg
     1501 gaccgcgcga ccctcgacgc agcctatagc aatggcaatc caccgtccga ctttgagacc
     1561 cgcagcgcag ccttctacgc gtcacacgcg ggcgaactca acgtcaggta cggagccgct
     1621 cc
//
LOCUS       DATGBK010000700         2366 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_8252, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000700 DATGBK010000000
VERSION     DATGBK010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8252"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..1558
                     /locus_tag="VKJ77_09930"
     CDS             65..1558
                     /locus_tag="VKJ77_09930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012492391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase Y family protein"
                     /protein_id="HMC45628.1"
                     /translation="MPVYVGIHLPRLSLEVFRPRWSPKPEHGCVVLDRDTVFIGDLGA
                     REAGVCVGMKRGGVLTLSPDTLMFERELSRENDLMREVAFSLMKFSPMVALCDEETIV
                     IDVTASLRLFGGIVRLCHQMRDIVDAIGVTARLSTAPTGQGAWLLAKSVRSAHLGKRR
                     VLKMASLERKLGTLPFQAAPEVRAFMDWFTGLGCKTLNDIRRLPRAGLKKRCGVALLD
                     SLDRAYGLAPELYEWLAVPPAFSARIEFPDRIEHAEAMLFSARRLIVQLCGWLSAQQL
                     ALTHATLTLEHERGRDAIDPTVIQIALAEPTWHEEHLLRLFKERLGRTELVAPVIAMR
                     LSAAKIQPAEPPTETLFPEPGGSPEDHNRLLELLVARLGAENVLRAAPSSDYRPEQAN
                     RWISVTDTTHPQKLEAVPSDLPRPAWLLETPLQLMMKSHRPFYGSSLKLVSPAERIEA
                     GWFDGNLTSRDYFVAQASDQSCYWIYRERPGSAEAEDPRWFLHGLFG"
     gene            1565..>2366
                     /locus_tag="VKJ77_09935"
     CDS             1565..>2366
                     /locus_tag="VKJ77_09935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HMC45629.1"
                     /translation="MDTTFSMLPAYAELFAFSNFTFLHGASRGEELVARAAQLGYAGL
                     AITDECSLAGVVRAHVEAKNLNFPLVIGSYFKLVNADLSPAFGLILLATNRNGYGNLS
                     ELITIARMRSKKGAYLLTPNDLARPDKEFAHLRGMPDCLAILVPDFPAIPVKQAALDA
                     QIEWLDSTFPQRAWVGLTLHQRALDDMHRGTIEHVAAFHKVPVVATGNVVMHVRSRKP
                     LQDTMTAIRIGKPVSECGYDLAPNAEQHLRSRLRLANLYPEYTIGETLN"
BASE COUNT          430 a          733 c          721 g          482 t
ORIGIN      
        1 ggcccgattc gcgccgaaag actgtccatc accctgcaac cctctcccgt tctgctgagt
       61 ccccatgccc gtgtacgtcg gcatacatct accccggttg tcgctggaag tgttccgtcc
      121 acgctggtcg cctaagcctg aacatggctg cgtcgtcctc gaccgcgaca cggtcttcat
      181 aggagacctg ggcgcgcgcg aggccggcgt gtgcgtgggc atgaaacgcg gtggcgtcct
      241 cacgctctcg cccgacaccc tcatgttcga gcgcgagctg agccgagaaa acgatttgat
      301 gcgcgaggtc gctttttcgc tgatgaaatt ctcacccatg gtcgcgcttt gcgatgagga
      361 aaccatcgtt atcgacgtca cggcgagctt gcggctcttc ggcggcatcg tgcggctgtg
      421 tcatcagatg cgggacattg tcgatgccat cggcgtgacg gcgcgtttaa gtacggcgcc
      481 gaccggccag ggcgcgtggc tgctggccaa aagcgtccgg agcgctcacc tcggcaagcg
      541 gcgcgtgctg aaaatggctt cgctcgaacg caagctcggg acactgccgt tccaggccgc
      601 gccggaagtg cgggcgttca tggactggtt cacggggctg ggctgcaaga cgctgaacga
      661 catccgtcgc ctgccgcgtg cagggctaaa aaaacgctgc ggcgtcgcgc tgctggattc
      721 gctcgatcgc gcttatggac tcgcgcccga gctctatgaa tggctggctg tgccgccggc
      781 tttcagcgcg cgcatcgagt tccccgatcg tatcgagcat gcggaagcga tgttgttttc
      841 cgcgcgccgc ttgatcgtgc aactgtgcgg ctggctgagc gcgcagcaac tggcgctcac
      901 gcacgccacg ctcacgctgg aacacgagcg cggccgcgat gccatcgacc ccaccgttat
      961 ccagatcgcc ctcgccgagc caacctggca cgaagaacat ctgttgcgct tgttcaagga
     1021 gcgacttggc cgcacggaac tcgtggcccc ggtgatcgcc atgcgcctga gcgccgcaaa
     1081 aatacagcct gccgaaccgc ctaccgagac gctttttccc gaacccggcg gttcgcctga
     1141 agaccacaac cgtttgctgg aattgctggt tgcgcggctg ggtgccgaga acgtgctgcg
     1201 tgcggcgcct tcatcggatt accggcctga acaggcgaac cgatggatct ccgtcaccga
     1261 caccacccat cctcaaaagc ttgaagccgt gccgtccgat ctgccgcgcc cggcgtggct
     1321 gcttgaaacg ccgttgcaac tgatgatgaa aagccaccgg ccgttttatg ggtcgtcgct
     1381 gaaactggtg tcgccggctg agcgcatcga agcgggatgg ttcgacggta atttgacaag
     1441 ccgcgattat ttcgtcgcgc aagccagcga tcaaagttgc tactggattt atcgcgaacg
     1501 gcccggtagt gcggaggccg aagacccgcg ctggtttctc cacggtctgt ttggatgatg
     1561 cgccgtggat acaaccttct ccatgctgcc cgcgtatgcg gagcttttcg cgttttccaa
     1621 cttcacgttc cttcacgggg catcgcgtgg agaggagctg gtcgcgcggg cggcgcaact
     1681 cggttatgcc ggtctggcga ttaccgacga atgctcgctc gcgggtgtcg tacgcgcgca
     1741 tgtggaggca aagaacctga attttccgct tgtgattggc tcgtatttca agctcgtcaa
     1801 cgcggatctt tcgccggcct tcggactcat tttgctggcg acgaaccgca atggatacgg
     1861 caatttgtcg gagctcatca ccattgcccg catgcggtcg aaaaaaggcg cttacctgct
     1921 cacgccgaac gatctggcac ggcccgataa agagttcgcc catctgcgcg gcatgccgga
     1981 ttgcctcgcg atcctggtgc ccgatttccc cgctatcccc gtaaaacagg ctgcgctcga
     2041 tgcccagatc gaatggctcg acagcacgtt tccgcaacgc gcgtgggttg ggttgacgct
     2101 gcatcagcgc gcgctcgatg acatgcatcg ggggaccatc gaacacgtgg ctgcgtttca
     2161 taaggtgccc gtggtggcaa ccggaaacgt ggtgatgcac gtgcgctcgc gcaagccgct
     2221 gcaggacaca atgacggcga ttcgtatcgg caaaccggta tcggaatgtg gttacgatct
     2281 cgctccgaat gccgaacaac atctgcgctc caggttgcgg ctcgcgaatc tctatccgga
     2341 atacacgatt ggtgaaacgc tcaacg
//
LOCUS       DATGBK010000701         1522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_263337, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000701 DATGBK010000000
VERSION     DATGBK010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263337"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1069)
                     /locus_tag="VKJ77_09940"
     CDS             complement(<1..1069)
                     /locus_tag="VKJ77_09940"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC45630.1"
                     /translation="MNCKRSITLIMDGNFRRVGSEIVSPHMAYARFGARFAECFDNVV
                     IVARSFPAAAAIGESVEGDGVSFVDLGANRGAWGLVKSLPRLLVRLYRQISVASIVLI
                     RFPGNIASLALLLCLISGKRFSVEVVADPADYFSAAASKHPLRSIAGFVHRWTTRFAA
                     RHAATVRYVTRDYLQIRYPAQSPDKMFGFSDVYLHDALFQISGVRTAAPDGHLRIINT
                     AMMHNYSKGHLVLLDAMAELRRRAVDCSLTLIGDGARRTEFEAHAARLGVSDNVRFLG
                     LIDADSVAAHVAQHDLFVLPSYQEGMPRAMLEAMAAGTPVIASNVGGISEVLSETSMV
                     PAGDVIALATRIETLARDRTLL"
     gene            complement(1029..>1522)
                     /locus_tag="VKJ77_09945"
     CDS             complement(1029..>1522)
                     /locus_tag="VKJ77_09945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HMC45631.1"
                     /translation="DLQGKPYRDAYLQRIRALMALLPDARLAVQARGRGNSDDVFYRE
                     HLGMSNAVLLKDVLAEGNAIVVSVRLHGSLESVLAGVPSVHLAYERKGRAAFSDLGLD
                     EFAFHASDFDPQAVADAVRSIMLDEEQYWMRVERSAQHSHQLFVEAIKHELQAFDHAD
                     HGR"
BASE COUNT          331 a          474 c          443 g          274 t
ORIGIN      
        1 ccagcagggt cctgtcgcgg gccagcgttt cgatgcgcgt tgccaacgcg atgacatcgc
       61 ccgcaggcac catgcttgtc tcgctcaaca cttcagaaat gccaccgacg tttgacgcga
      121 tgaccggggt accggcagcc attgcttcca gcatcgcgcg cggcataccc tcctgatagg
      181 agggcagcac gaacaagtca tgttgcgcga catgagcggc tacgctgtcc gcatcgataa
      241 ggcccaggaa acggacgtta tctgagaccc cgagcctcgc cgcgtgcgct tcgaactcag
      301 tgcgccgcgc gccgtcgccg atcaaggtca gagaacaatc gacggctcgc cgacgtagct
      361 ctgccatggc atcaagcagg accagatggc ctttgctgta gttgtgcatc atggcggtgt
      421 tgatgattcg caggtgtcca tcgggtgcag cagtgcgcac gccggatatc tggaacaatg
      481 cgtcgtgaag atagacatcg ctgaaaccga acatcttgtc cgggctctgt gcggggtagc
      541 ggatttgcaa atagtcgcgc gtgacgtagc gaacggtggc cgcatgcctt gccgcaaagc
      601 gcgtggtcca gcgatgaacg aatcccgcta tcgaacgcaa tggatgcttc gacgccgccg
      661 cgctgaaata atcggcggga tcggcgacca cttcaaccga gaagcgcttg ccgcttatca
      721 ggcacagcag taaggcaagc gacgcgatat tgccggggaa ccggatcagc acaatcgatg
      781 ccactgagat ctgccggtag agccgaacca gcaaacgcgg caagcttttc accaggcccc
      841 acgcgccgcg gttagcgccc aggtccacga atgaaacccc gtcgccctcg acgctttcgc
      901 caatcgctgc agcggcagga aacgaacgcg cgacgatgac gacgttgtcg aaacactccg
      961 cgaaacgcgc accaaaacgt gcataggcca tatgcgggct gacaatctca ctccctacgc
     1021 ggcggaagtt accgtccatg atcagcgtga tcgaacgctt gcagttcatg tttgatagcc
     1081 tccacaaaaa gttgatggct gtgctgtgca ctacgctcga cccgcatcca atattgttcc
     1141 tcgtcgagca tgatggatcg cactgcatca gccaccgctt gcggatcgaa gtcgctggca
     1201 tggaacgcga actcgtccag cccaaggtcg gaaaacgcgg cacggccctt acgctcatac
     1261 gccagatgca cgctcggcac gccggccaga acgctctcca ggctgccgtg caaccgcacc
     1321 gaaacgacta tggcattgcc ttcagccagc acgtccttga gcagcaccgc gttgctcatg
     1381 cccagatgct cgcggtagaa aacgtcgtcg ctgttgccgc ggccgcgagc ctgcacggct
     1441 agccttgcat cagggagtag cgccatgagt gcacggatgc gttgcagata ggcgtcgcga
     1501 tatggcttac cttgcaggtc gc
//
LOCUS       DATGBK010000702         2045 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_100976, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000702 DATGBK010000000
VERSION     DATGBK010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100976"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..545)
                     /locus_tag="VKJ77_09950"
     CDS             complement(<1..545)
                     /locus_tag="VKJ77_09950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45632.1"
                     /translation="MDRFKQMETFVAVVAKGSLSAAALAEGVAPAVMGRRLDALEERL
                     GVKLLVRTTRRLTLTFEGSAFLEDCQRVIHDMQSAEASVSAGGVKASGHLRVSAPAGF
                     GRRHVAALVPVFTSMHPDVSITLDLTDRMVDLVNEGFDCAVRLGELPDSSLVSLKLGE
                     NRRVCVASPEYLRVRGAPADL"
     gene            683..1462
                     /locus_tag="VKJ77_09955"
     CDS             683..1462
                     /locus_tag="VKJ77_09955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018784 - (S)-2-haloacid dehalogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006805 - xenobiotic metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase type II"
                     /protein_id="HMC45633.1"
                     /translation="MSTTSISPPRAVIFDAYGTLFDVHSVVAAAEQLFPGHGDTLSQL
                     WRQKQIEYTQLRTLSDPAGARYEPFWAVTLDALRYAATRLKLDHALTPAAEKRLMDEY
                     ACLAAFPDTVTALKTLRKRPDLKLAILSNGNPQMLDIAVKSAGMSGLFDHVLSVDAVR
                     AYKPAPAAYALGTQAIGVAASEIVFVSSNGWDVTGATWFGYTTFWLNRMAMPAEQLGV
                     MPRGTGRDMTDLLAFIDAGCPQHQHAAPFDLSKRMPRSPAK"
     gene            1522..>2045
                     /locus_tag="VKJ77_09960"
     CDS             1522..>2045
                     /locus_tag="VKJ77_09960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006402612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HMC45634.1"
                     /translation="MANTLTHVPQGMTITADIKPGYETILTPEALELVATLHRAFEPR
                     RQALLKARAERTKRLDAGERPDFLSETQSIRDADWTIAPLPRALQCRRVEITGPVERK
                     MIINALNSGADSYMTDFEDSNTPNWDNQMTGHINLKEAVRGTISLEQNGKAYKLNDKT
                     ATLIVRPRGWHLDE"
BASE COUNT          452 a          676 c          568 g          349 t
ORIGIN      
        1 tcgagatcgg cgggcgcgcc gcgcacgcgc aaatattccg gcgacgccac gcaaaccctg
       61 cggttctcac ccagcttcaa cgacaccagc gacgagtccg gcaactcgcc aagccgcacc
      121 gcgcaatcga aaccctcgtt gaccaggtcg accatgcggt ccgtcaggtc gagcgtgata
      181 gaaacatccg ggtgcatcga ggtaaaaacg gggacgagcg cggcaacgtg gcgcctcccg
      241 aaacccgccg gggcagacac ccgcagatgc ccgctcgcct tcaccccgcc ggccgacacg
      301 ctcgcctccg cgctctgcat gtcatgaatc acccgctggc aatcctccag aaatgccgat
      361 ccttcgaagg tgagcgtcaa ccggcgcgtg gtgcgcacga gcagcttcac gccgagccgc
      421 tcttccagcg cgtccagccg ccggcccatc acggcgggtg caacgccctc ggctagtgcc
      481 gcagcggaca ggcttccctt cgcaacaacc gccacgaacg tttccatttg cttgaatcgg
      541 tccatgcgcg cgcgtttgtt ggaatgtcgg ggcgtttaga ttaggcgcga aaaagtcaaa
      601 gatcaagtga tctggatgca tcttccggtc gttccaacgc actaatagaa tggtcaacga
      661 tctaatttac ggagcgccag tcatgtccac gacatcgatt tcgcctcctc gtgcagtcat
      721 cttcgatgcc tacggcacgc tgttcgacgt gcactccgtc gtggcggccg ccgagcagtt
      781 attccccggt cacggcgaca cgctttcgca gttgtggcgc caaaagcaga tcgaatacac
      841 acagttgcgc acactctcgg accccgccgg cgcccgatat gaaccgttct gggcagtcac
      901 gctagacgcg ctgcgctacg ccgccacgcg cctgaaactc gaccatgcac tcacgccggc
      961 cgccgaaaag cgcttgatgg acgaatacgc ctgcctcgct gcatttccgg acaccgtcac
     1021 cgcgctgaaa acgctacgca aacgcccgga tttgaaactc gcgatcctgt cgaacggcaa
     1081 tccgcaaatg ctggacatcg cggtgaaaag cgccggcatg tcgggtctct tcgatcacgt
     1141 cctctcagtg gacgccgtgc gggcctacaa acccgccccc gctgcctacg cactcggaac
     1201 gcaagcgatc ggcgtggcgg catctgaaat cgtgtttgta tcgtcgaacg gctgggatgt
     1261 gacgggcgcg acgtggtttg gctacaccac tttctggctc aaccgcatgg cgatgccagc
     1321 ggaacaactc ggcgtcatgc cacgcggcac cggacgcgat atgaccgatc tgcttgcttt
     1381 tatcgatgca ggctgtccgc agcaccagca cgcggcgccg ttcgatcttt caaagcgcat
     1441 gccgcgcagc cctgccaagt aaccgattca tagatttacc gagcaagcaa aaccgtctga
     1501 ccgaccaagg agatgtagaa catggcgaac acgctgaccc acgtgccgca gggcatgacc
     1561 atcacggctg acatcaaacc cggctacgag accatcctga cgcccgaggc gctagagctg
     1621 gtagcaacgc tacatcgtgc atttgagcca cgtcgtcagg ctttgctcaa ggcgcgcgcc
     1681 gaacgcacaa agcggctgga cgcaggcgaa cgcccggatt tcctcagcga aacgcaatcc
     1741 atccgcgatg cggactggac catcgcaccg ttgcccagag cgctgcaatg ccgccgagtc
     1801 gaaatcaccg ggccggtcga acgcaagatg atcatcaacg cgctgaactc cggcgcggat
     1861 tcgtacatga cagacttcga ggattcgaac acgccgaact gggacaacca gatgaccggt
     1921 catatcaatt tgaaggaagc agtacgcggc acgatttcgc ttgaacagaa cggcaaggca
     1981 tacaagctca acgataaaac cgcgacgctg atcgtgcgtc cgcgcggctg gcatctcgat
     2041 gaaaa
//
LOCUS       DATGBK010000703         1563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_263371, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000703 DATGBK010000000
VERSION     DATGBK010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263371"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(210..1373)
                     /locus_tag="VKJ77_09965"
     CDS             complement(210..1373)
                     /locus_tag="VKJ77_09965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003537933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HMC45635.1"
                     /translation="MRFCDSIFGRLLKPISRVQLASTVERNDGNAYDKVFKSWDHLVA
                     LVFAQLGGVDSLRALEAVWNANSHHHYHLGVGKLKRATLSDANARRPVAVFAETFERL
                     SGLADRTLKREGSEMLRLIDATPIPLDQLVHWADWNGRTRGLKLHVVYDPGSDHPRRL
                     AITPSTVNDVTPAQEVPIEAGATYVFDKAYCSYAWWTRLHDAGACFVTRQKTNARFRA
                     TCWRTLRKRNGEGFTIIDDAEVKLVSAGNARLPIPMRRIRLKRDDGAKLTLITNDLKR
                     SAIEIAELYKTRWQIELLFRWIKQHLKLRKFLGRSENAIRLQILAAMIAYLLLRIAAR
                     ESRLVMPAIRFAGLVAASLFVRKPVADIDRPPKVNPSAARDRASPDQFSFCYA"
BASE COUNT          303 a          470 c          499 g          291 t
ORIGIN      
        1 tgtcccggac gcggcgcagc gtcctttacg ctgctccgca gagccgggac ccacgaagcc
       61 cggacgtctg tgtcggtgat gtggaccccg gatcagcagc gcaccaccat agcgcgtcga
      121 agacgcgcgt gaacgcgctg atggcgctgc gcagcatccg gggaacggat actcctcgcc
      181 ccgcacttgc gcagggctgt ccggggaagt tatgcatagc agaagctgaa ctggtcaggg
      241 gaggctcggt cgcgggcggc ggatgggttg actttgggag gccggtcgat atcggcgacc
      301 ggctttcgga cgaacagcga tgctgcgacg aggccagcaa agcgaatggc aggcataacg
      361 agacggcttt cgcgcgcagc gatccgcagc agcagataag cgatcatggc ggcgaggatc
      421 tgcaggcgga tcgcgttttc ggagcggccg aggaacttgc gaagcttcag atgctgcttg
      481 atccagcgga acagcaactc gatctgccag cgggttttgt aaagctcggc gatctcgatg
      541 gccgaacgtt tcagatcatt ggtgatgagg gtcagttttg caccgtcatc gcgcttgaga
      601 cggatgcggc gcatcggaat cggaagccgg gcattgcccg cactgacgag cttcacctcg
      661 gcatcgtcga tgatcgtgaa gccctcgccg tttcgttttc gaagcgtccg ccagcacgtg
      721 gctctgaagc gcgcatttgt cttctggcgg gtgacgaagc aggcgccggc gtcatgaagc
      781 cgcgtccacc aggcataact gcaataggcc ttgtcgaaca cgtaagtggc acccgcctcg
      841 atcggcacct cttgagccgg cgtcacgtca tttaccgtcg atggcgtgat cgccagacgg
      901 cgggggtgat ccgagccggg atcgtacacc acgtgcagct tgaggccacg cgtgcgtccg
      961 ttccaatcgg cccaatggac aagctgatcg agcgggatcg gcgtcgcatc gatcagccgc
     1021 agcatctcgg agccttcccg tttcagcgtc cggtcggcaa gccccgaaag tcgttcgaag
     1081 gtctcggcga agacagcaac cggacgccga gcgttagcgt ccgacagcgt cgcccgcttc
     1141 agcttgccga cgccaaggtg gtagtgatga tgcgaattgg cgttccagac cgcctcaagg
     1201 gctcgcaggc tatcgacgcc tccaagctgg gcaaacacca gtgcgaccaa gtgatcccag
     1261 ctcttgaata ccttgtcgta ggcattgccg tcgtttcttt ccaccgtgct cgcaagctgg
     1321 acccgcgaga tcggtttcag cagccttcca aaaatgctat cgcaaaatcg catgcccggt
     1381 ccctttctga gtctcgacaa ccagaaagta cctgcttcat gccggttaaa ccgggcatgc
     1441 acccgcggca tagtgaatca ttccccggac agccctgcgc gcttgcgggg gagggtcggg
     1501 gtggggaaag cggcagcggg attcgcggag agagcccctc accctccttc gcggagttta
     1561 tca
//
LOCUS       DATGBK010000704         1790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286488, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000704 DATGBK010000000
VERSION     DATGBK010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286488"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..342
                     /locus_tag="VKJ77_09970"
     CDS             <1..342
                     /locus_tag="VKJ77_09970"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC45636.1"
                     /translation="QGDISLDYVGEVGAQVAERFTAYEMAGLASSWTGVYDVTPDWNP
                     VLGPVGNIEGLTVGFGFSGHGFKLSPGIGKILAQHALGQATDVSLSPYALDRFASGAL
                     LVGKYGSGAVS"
     gene            371..1144
                     /locus_tag="VKJ77_09975"
     CDS             371..1144
                     /locus_tag="VKJ77_09975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HMC45637.1"
                     /translation="MKILVPVKRVVDANVRVRIGSAGSVDTAGLKMSLNPFDECAVEQ
                     ALRLREAGVASSVTVLTCGLPVCQDVLRTALAMGADNAVLIDTATASPDSLGIARLLH
                     AFITADTDADAYGLVLCGKQAIDDDIGGVAAMLAGLLSWPQALNASAIEAAGLGWLVT
                     CGDDAGTATWRLAGPAVLSADLRLAEPRRVTLPSIVKAKQKPLRTLDAATFNVALGTQ
                     MRIVEMAEPAVRQPGIKVADTAALLDAIGSKRLFQNVGA"
     gene            1147..>1790
                     /locus_tag="VKJ77_09980"
     CDS             1147..>1790
                     /locus_tag="VKJ77_09980"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HMC45638.1"
                     /translation="MRSLVVGEWEDGAIADATLRVIRAASERGVPVDVLTFSSVMANA
                     AVCVDGVERVLLASDDVPNPETLAALLQHIASDYSMISSSHRSAGRAALPRAAALTGN
                     AFLADITRVVTAQRFVRGLYAGSVVATIESTSATLFATFRTSSFAPACATGGEASIVA
                     LDPIAPFTATVLIDQQGAALDAHDLSSARIVVAGGRGLASKENMDKLGTLARDMG"
BASE COUNT          314 a          553 c          573 g          350 t
ORIGIN      
        1 caaggcgaca tctcgctcga ctatgttggc gaagtcggtg cccaggttgc agaacgtttt
       61 accgcgtacg aaatggccgg tctcgcttca tcgtggaccg gggtgtatga cgtcacgccg
      121 gactggaacc ccgtgctcgg acctgtaggg aacatagaag gattgacggt cggattcggc
      181 ttctccgggc atggcttcaa actgtcgccg ggaatcggca agattctcgc gcagcacgcg
      241 ttgggccagg ccaccgacgt ctccctctcg ccgtacgcgc tcgatcgttt cgcgagcggt
      301 gcgttgctgg tcggcaaata cggttcaggc gcggtgtcct gaacccttcg actgtaaccc
      361 tgaaatcacc atgaaaattc tcgtccccgt gaaacgggtc gtcgatgcca acgtgcgcgt
      421 tcgcatcggc tccgcaggca gcgttgatac agcgggcctg aaaatgtcgc tcaacccgtt
      481 cgacgaatgc gctgtcgaac aagccttgcg tctgcgcgaa gcgggggttg cgtcgagcgt
      541 gaccgtgctc acctgcggcc tgcccgtttg tcaggacgtg ctgcgcaccg cgttggcgat
      601 gggtgcggac aacgcggtgc tgattgatac agccactgct tcaccggact cgctcggcat
      661 agcgcgtctg ctgcacgcgt tcattacagc cgataccgat gccgacgcct acggtctcgt
      721 gctgtgcggc aagcaggcga ttgatgacga catcggcggc gttgcagcaa tgcttgccgg
      781 gttgctcagc tggccacagg cactcaatgc atccgcgatt gaagcggcag gactcggttg
      841 gctggtcacc tgcggcgacg acgccggcac ggccacctgg cgccttgccg ggccggccgt
      901 gctcagtgcg gatctgcgct tggccgagcc ccgccgcgtc acgttgccga gcatcgtgaa
      961 ggctaaacaa aaaccgctgc gcacgcttga tgccgccacg ttcaacgtcg cactcggcac
     1021 acaaatgcgg atcgtggaga tggccgagcc ggcggtccgc cagcccggta tcaaagtcgc
     1081 cgataccgcc gcactgcttg acgccatcgg cagcaagcgg ctgtttcaga acgtgggagc
     1141 gtgaccatga gaagtcttgt cgtaggggaa tgggaagacg gagcgatcgc cgatgcgacc
     1201 ttgcgtgtaa tcagagcggc gagtgagcgt ggcgtaccgg tggacgtgct cacgttttcg
     1261 tctgtcatgg cgaatgcggc tgtgtgcgtc gacggcgtcg agcgcgtgct gctggcatcg
     1321 gacgacgtac ccaatcccga aacacttgcc gcgcttcttc agcatattgc ttcggattac
     1381 tcgatgattt cctcaagcca ccggtcagcg ggccgcgcag cccttccccg cgccgcagcg
     1441 ttgaccggca acgcgtttct cgcggacatc acgcgcgttg tgacggctca gcgtttcgtg
     1501 cgcggtctct atgcaggcag cgtggtcgcg acaatcgaaa gtactagcgc cacgctcttt
     1561 gccaccttcc ggacgtcatc gttcgcgcct gcttgcgcaa ccggtggtga ggcgtcgatc
     1621 gtcgcgctcg atcccatcgc accattcacc gcgaccgttt tgatcgacca acagggcgcg
     1681 gcgcttgacg cgcacgatct gtcgagcgcg cgaatcgtgg tcgccggagg ccggggactg
     1741 gcatcgaagg agaatatgga caagctcggc acgttggccc gcgacatggg
//
LOCUS       DATGBK010000705         2823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_309418, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000705 DATGBK010000000
VERSION     DATGBK010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309418"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..640)
                     /locus_tag="VKJ77_09985"
     CDS             complement(<1..640)
                     /locus_tag="VKJ77_09985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45639.1"
                     /translation="MSTPADTPLIRANALTRRDPVRDVVLLHPTTFSLSGGQRAVITG
                     PSGSGKSVFLRALALLDPVDDGVIQWRGKTIARAGIPAYRRRVAYIAQRPAMLDGSVE
                     DNLRYPFSLKVYRDVRFDRERVIKLTRRAGREADFLDKRASELSGGEAQIAALIRVLQ
                     VDPDVLLLDEPTASLDPASALEIEALVGAWFDDRQGERASIWVSHDPAQAQRV"
     gene            870..>2823
                     /locus_tag="VKJ77_09990"
     CDS             870..>2823
                     /locus_tag="VKJ77_09990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HMC45640.1"
                     /translation="MALGRKIGKTVAWIIAVLIVLIAVLVIVFLTFDWNRARPWVDDK
                     VSQAIGRPFQITGDLKVGWQRPPGVAGWRRWVPWPRFSAEKITVANPDWTKQKFFATL
                     DEIDFQVEILPLLAHNVVIPSINLVNPSVDLERLKDNRDNWTFKFKQSTEPSTWNLQL
                     HDIALNQGNIAYADEITKANMQVVVNTLGQMIPIGDVMKQQEAASQKSSAQIVGKSGA
                     TKLNQQVDKAAASEAAAASAASAAAAANASAPNPASVSANTSITTKEGPKPPVPPYGI
                     GWSVKGKYNSVAVSGDGKVGGVLALQDAMRPFPVQADVRIGDTHIAFVGTVTDPAHLA
                     ALDLRLWLQGVSLEHLYPIVGVTLPATPPYATEGRLVGQFKADGNVFRYENFTGRVGG
                     SDVNGSLTFVGRKPRPLLSGELVSNLLQFSDLAPVIGADSNASKAKRGDSAKQPSSKA
                     LPTEEFKTDRWKAIDADVKFTGRKIIKDPALPISNLYTHVVMSDGVLSFEPLSFGVAG
                     GTLSSNIHLDGSKEPLQGRFSTSARHLKLKELLPTVKTMQSALGEVNGDAALSATGNS
                     PAALAGTANGEVKTLITDGTVSRLYMEAAGLNVANAVYEKLFGKHDVKINCAAADFVA
                     TNGVLESRVFALDTDDAVINMDGTVNL"
BASE COUNT          572 a          837 c          894 g          520 t
ORIGIN      
        1 ctacacgttg cgcctgcgcc ggatcgtgtg acacccagat gctggcgcgt tcgccttggc
       61 gatcgtcgaa ccaggcacca acgagcgctt ctatttccag cgctgacgca ggatcgagtg
      121 acgccgtcgg ttcgtcgagc agcagcacgt cggggtcaac ttgcaacacg cgtatcagcg
      181 cggcaatttg cgcttcaccc cccgatagct cgctcgcgcg tttatcgagg aaatcggctt
      241 cgcggcctgc ccggcgagtc agcttgatca cacgctcacg atcgaagcgc acgtcgcgat
      301 acaccttcag cgaaaacgga taacgcaggt tgtcttccac gctgccatcg agcatggccg
      361 ggcgttgtgc aatgtaagcc actcgtcgcc ggtacgccgg aatacccgcg cgcgcgatgg
      421 tcttgccgcg ccactggatc acaccgtcat cgacaggatc gagcagcgca agcgcacgca
      481 ggaacacact cttgcctgag cccgatggcc cagtgataac cgcgcgctga cctccggaca
      541 agctgaacgt ggtgggatgc agcaagacca catcgcgcac gggatcgcgg cgggtgagcg
      601 cattcgcgcg aatcaggggc gtgtcggctg gcgtggacat ggcgaagaca ggctcgggga
      661 aagatctcgg agggcaatca taaatcaacg ctgcttaggc gatccttagg tcagttgtgc
      721 gcgtcagttg tgcccgattc ttgatcgagc cgctcaagcg tcgagcgcgg cgggggcgcc
      781 gttccttccc ggcatggtga actcgccggt atcatcgccg ggcacgcgac gtgctgtgcc
      841 gtgtttcaac aaaaacagag ggagccacta tggcgcttgg ccggaaaatc ggaaaaacag
      901 tcgcctggat cattgcggtt ctgatcgtcc tgatcgctgt gctggtgatc gttttcctga
      961 ccttcgactg gaaccgggct cgcccctggg tcgacgataa agtctcgcag gctatcggcc
     1021 ggccgttcca gattacgggt gacttgaagg tcggctggca acggccgcca ggcgttgccg
     1081 gctggcggcg ctgggttccg tggccgcgtt tctcggctga aaaaatcacg gtcgcgaatc
     1141 ccgactggac caaacagaag tttttcgcga ccctggacga gatcgatttc caggtcgaaa
     1201 tcctgccgct gctcgcgcat aacgttgtga ttccatcgat caacctggtg aatccctcag
     1261 tcgatctgga acgcctgaag gacaaccgcg ataactggac gttcaagttc aaacagtcga
     1321 ccgaaccgtc gacctggaac cttcaactgc atgacatcgc gctgaaccaa ggcaatattg
     1381 cgtacgcgga cgagatcacg aaagcgaaca tgcaggtggt cgtgaatacg ctcggccaga
     1441 tgattcccat cggcgatgtg atgaaacagc aggaagcggc atcgcagaaa tcgtcggccc
     1501 agatcgtcgg caagagcggc gcgaccaagc tgaaccagca agtcgataaa gccgcggcat
     1561 ctgaagccgc cgctgcatcc gcggcgtcgg ccgctgccgc cgccaatgcg agcgcgccga
     1621 acccggcgag cgtctcggcg aataccagta tcaccacgaa ggaagggccg aagccgcccg
     1681 tgcccccgta tggcatcggc tggtcggtga agggcaaata caacagcgtg gcggtttccg
     1741 gcgacggcaa ggttggcggt gtgctcgcat tgcaggacgc tatgcgtccg ttccctgtgc
     1801 aggcggatgt tcgtatcgga gacacgcata ttgcttttgt cggaaccgtg accgatccgg
     1861 cccatctcgc cgcactcgac ttgcggcttt ggctgcaggg cgtgagcctc gagcatttgt
     1921 atccgatcgt tggcgtgacg ctgccggcaa cgccgccgta tgcaacggaa ggacggctcg
     1981 tcggccagtt caaggctgac ggcaatgtct tcaggtacga gaacttcacc ggacgcgtgg
     2041 gcggcagcga tgtgaacggt tcgctcacgt tcgtgggacg caagccgcgg cccttgctgt
     2101 cgggcgaact ggtgtcgaac ctgctgcagt tctccgacct cgcccctgtc atcggggccg
     2161 attcgaacgc cagcaaagcg aagcgcggcg actcggcgaa acagccgtcg tcgaaggcgt
     2221 tgccgaccga ggaattcaag acggatcgat ggaaggcgat cgatgccgac gtgaagttca
     2281 ccggccgcaa gatcatcaag gatccggcgt tgccaatttc caacctctat acgcatgtgg
     2341 tgatgagcga cggcgtgctg tcgttcgaac cgctgtcgtt cggggtggcg ggcgggacgc
     2401 tgtcgtcgaa tatccacctc gatggcagca aggagccgct ccagggccgt ttctcgacct
     2461 cggcgcgtca tttgaagctc aaggagttgc tgccgaccgt caagacgatg cagtcagcgc
     2521 tcggtgaagt gaacggggac gcggcgttat cggcgacagg caattcgcct gccgcactcg
     2581 ccggaaccgc gaacggcgag gtcaagacgc tgatcaccga cggcacggtc agccggctgt
     2641 atatggaagc ggcggggctg aatgtggcga atgcggtcta cgaaaagctc ttcggcaaac
     2701 acgacgtgaa gatcaactgc gcggcggcgg actttgtcgc gaccaatggc gtgctggaat
     2761 cgcgcgtgtt tgccctggat accgacgacg cggtgatcaa catggacggc accgttaatc
     2821 tta
//
LOCUS       DATGBK010000706         1924 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_124355, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000706 DATGBK010000000
VERSION     DATGBK010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124355"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..945
                     /locus_tag="VKJ77_09995"
     CDS             <1..945
                     /locus_tag="VKJ77_09995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC45641.1"
                     /translation="KLNPFDRPLSPDELIREAQGQHFVVASRDSAAPAALFDQLPDLI
                     AFCRVAVDIRNIDVSAASRHGVLVTRATPGFDTSVAEWVLGVMIDLSRGISAAAAAYW
                     QQRAPVIAMGRELRGAVLGIVGYGFIGRRLAELGIALGMRVVVTDPLATITQPGIEQA
                     SFDDVLKCGDYVVCLAPATPETTDLFNTVAFARMRPEAFFINASRGELVDDNALLHAL
                     DAGLIAGAAVDVGRAADQMPSPALAAHQKLVASPHVGGLTPPAIEHQAMDTVRQVRAL
                     LDGVIPEHAVNAECAARLTRLPGFSGALQGGQPGTTRH"
     gene            948..1487
                     /locus_tag="VKJ77_10000"
                     /pseudo
     CDS             948..1487
                     /locus_tag="VKJ77_10000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690676.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
     gene            complement(1527..>1924)
                     /locus_tag="VKJ77_10005"
     CDS             complement(1527..>1924)
                     /locus_tag="VKJ77_10005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016833667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HMC45642.1"
                     /translation="YSTDSEAIQLMKAQHSQAQVFETRDATRNRLVDLSLGGTCDNPP
                     PAGSWVGIELHRQVEVIEHFTLGTGVSKVDARWWTPAAVKCFKTNGDVKIVAFGVDSV
                     DAYAAASCLGIDAVMTDSPRSMRIERKSQ"
BASE COUNT          335 a          579 c          616 g          394 t
ORIGIN      
        1 aagctcaatc cgttcgaccg gccgttgtca cccgacgaac ttatccgcga agcgcagggg
       61 cagcattttg tcgtggcaag ccgcgattca gcggctcctg ccgcgctctt cgaccagttg
      121 ccggatctga tcgcgttttg ccgcgtggca gtggatatcc gcaatatcga tgtcagtgca
      181 gcgagccgtc acggtgtcct cgtgacgcgt gcgacgccgg gcttcgatac atcggtcgcg
      241 gagtgggtcc tgggcgtgat gatcgacctg agccgcggca ttagtgcggc tgccgcggcg
      301 tactggcagc aacgcgcgcc tgtcattgca atgggacgcg agttgcgtgg cgcggtgctc
      361 ggcattgtcg gctacggttt tatcgggcgg cggctggccg aactcggcat cgcgctggga
      421 atgcgtgtgg tggtgaccga tcctttggcg acgattacgc agccgggaat tgaacaagcc
      481 tcattcgacg atgtgctgaa atgcggcgac tacgttgtct gcctggcacc ggccacgccg
      541 gagacaaccg acttgttcaa taccgtagcg tttgcgcgca tgcgacccga ggcatttttc
      601 atcaatgcgt cgcgaggcga acttgtcgac gataacgcgc tgcttcatgc gctcgatgcc
      661 ggtttgatcg ccggcgcggc ggtggatgtg ggccgtgctg ccgaccagat gccgagtccg
      721 gcgctggccg cgcatcagaa gcttgtcgcg agtccgcacg tgggtggtct cacgccgccc
      781 gccatcgagc accaggcgat ggacacggtg cggcaagttc gagcactgct cgatggtgtc
      841 ataccggagc atgcggtcaa cgcggaatgc gccgcgcgac tcacgcgttt gccgggattt
      901 tcaggcgcct tgcaaggagg tcaaccggga acgacacgtc actgaacatg ctgggtgcgt
      961 gcgattgcca cgttcacatc gatgaactcg aacgttatcc gctcgccagt acctcgactt
     1021 acggaccacc tcaggcgtcg tggagcgacg acacggcagt gcaacgaatg gcaactgggt
     1081 cttgcacgcg cgatcctcct gcagccgacg ggttacggct gtgacaagcg ctgcctgctg
     1141 ggcgcattgg aaagttcctg gagccggtcg ctaccgatcg ccccggtttt cgaagcctgc
     1201 tcgctctact cggagcaggc agaacctggg tgaaagcatc ggctccgtac gaaacctcga
     1261 aggtcggacc acctcattac gacgatgtca gcaagcttgc ctgcgcgctg actgattcac
     1321 gtccggagcg ttgcctatgg gacggcaatt ggccacatcc aggccgcgag ccagtgccca
     1381 atgatgaaga gatgcttgcg ctgctctcgt actgggctcc cgacagcgcc gggcgccgga
     1441 agatcctcgt cgacaatccg aggcagttgt acgggttcgg cgcttgagtg gctgcgcgag
     1501 ttggcgcatg acttcgctgg tttttgttac tgcgatttcc tctcgatgcg catggagcgc
     1561 ggcgagtctg tcattactgc gtcaatgccg aggcaggagg ccgctgcgta tgcgtcaacc
     1621 gagtcgaccc cgaacgcgac gatcttcacg tccccgttgg tcttgaagca ttttacggca
     1681 gcaggggtcc accaccgcgc atccaccttc gataccccgg tccccagcgt gaagtgctcg
     1741 atcacttcga cctgacgatg caattcgatt cccacccagc ttccggcggg aggcgggttg
     1801 tcgcaggtcc cgccgagcga gagatcgacc agacggttgc gggtcgcatc gcgggtttcg
     1861 aacacctgtg cctggctgtg ctgcgccttc atcaactgga ttgcttcgga gtccgtggag
     1921 tata
//
LOCUS       DATGBK010000707         1660 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_55117, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000707 DATGBK010000000
VERSION     DATGBK010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55117"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            407..>1660
                     /locus_tag="VKJ77_10010"
     CDS             407..>1660
                     /locus_tag="VKJ77_10010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HMC45643.1"
                     /translation="MPLSDRRLLVAPDAEDAPDAAGEPAAPVQKRKRGRPAGAKTLAS
                     LEIAADKVQPLKPAAAPPKPVDKLAKLGLKSDIDLVLHLPMRYEDETSVTPIAHLIPG
                     DNTQTEGVVFDNEIAYRPRRQLLVKIHDDAGDELTLRFLNFYGSQVKQMAIGVRLRVR
                     GDVRGGFFGMEMVHPAVRPVDEDTPLPQALTPVYPSTAGVSQAYLRKAIDSALSRVHL
                     PELLPEKIARAHLQPLNVPALLDAVKTLHHPHADSDENALIDGTHPAWTRIKFEGLLA
                     QQLSLKRAHEERRTRAAPVMPRLQHVPESLVARFLNTLPFKLTGAQERVCAEISGELM
                     LPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQAALMAPTEILAEQHARKLRGWLEP
                     LGVEVAWLAGSMKAKQKRAALEAVAS"
BASE COUNT          316 a          512 c          532 g          300 t
ORIGIN      
        1 gggcggcaga ttaaaatcga agtcggaaag cgtgaacatg gggaaagcgg gtcgatgcgc
       61 gatgaaacgc gcgttatttt ggccaggcgt ttggcaaggc tgcgcgggta ggcgctggtt
      121 cagtgcgtta atacagtttg cgggccggct gtctgatcga ccgttgcgac ggtttcaaat
      181 cgcgcctcgg cctcacgaaa tccactgggc cgcttgcaga tcgggccttg gtatgcaccg
      241 ggaaaccgtt gatttcgcgg ctgcgtccca tgcggccaat gggcaaaaat ccgtcgccgg
      301 ccgcatgttc aggcgtttca acgaacccgc acatgccgcg cggcgagcgg atgatgaccg
      361 catcgccgtg ccgaacgaag ccgatattgt actttgaaga gattagatgc ccttgtccga
      421 ccgccgtttg ctcgttgctc ccgacgctga agacgctccc gatgcagccg gtgaacccgc
      481 cgcgcccgtt caaaagcgca agcgcgggcg accggccggc gcgaaaacgc tcgcgagtct
      541 cgagatcgcc gcggacaagg tccagccgct taaacctgct gccgcccccc ccaaacccgt
      601 cgataaactc gccaagcttg gcctgaaatc cgatatcgat ctcgtgctgc atctgccgat
      661 gcgttatgag gacgaaacca gcgtcacgcc gatcgcccat ctgattcccg gcgacaacac
      721 gcagaccgaa ggcgtggtgt tcgacaacga gatcgcatac cggccgcgtc ggcaattgct
      781 ggtcaagatc cacgatgacg ccggcgacga actcacgctg cgttttctca atttctacgg
      841 ttctcaggtc aagcagatgg cgatcggtgt gcgcctgcgg gtgcgtggcg acgtgcgcgg
      901 cggctttttc ggcatggaga tggtgcatcc ggcggtgcgt ccggtggatg aagacacgcc
      961 gctgccgcaa gcgttgacgc ccgtgtatcc gagcacggcg ggggtgtcgc aggcgtattt
     1021 gcgcaaggct atcgacagcg cgttgtcgcg ggttcatctg cctgagttgc tgccggaaaa
     1081 aatcgcccgt gcgcatctgc agccgctgaa cgtgcccgct ttgctcgatg ccgtcaaaac
     1141 gctccaccac ccgcacgccg attccgatga aaacgcgttg atcgacggca cgcatccggc
     1201 gtggacgcgc atcaagtttg agggattgct cgcgcagcag ttgtcgctca aacgtgcgca
     1261 tgaggaacgc cgcacgcgcg ccgctccggt gatgccgcgg ttacagcatg tgcccgaatc
     1321 gctggtcgca cgcttcctca atacattgcc gttcaagctg actggcgcgc aggaacgcgt
     1381 gtgcgccgag atatccggtg aactcatgtt gccgcaccca atgcagcgcc tgttgcaagg
     1441 cgatgtgggc agcggcaaga cgatcgtggc ggcgctcgcc gcggcccagg cgatcgacgc
     1501 cggctaccag gccgcgctca tggcgcccac tgaaattctc gccgagcagc atgcgcgcaa
     1561 gctgcgcggc tggctggagc cgctcggcgt cgaggtcgcg tggctggccg gaagcatgaa
     1621 ggccaaacaa aagcgcgcgg cactcgaagc ggtagcgtcg
//
LOCUS       DATGBK010000708         2553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_332559, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000708 DATGBK010000000
VERSION     DATGBK010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332559"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..638)
                     /locus_tag="VKJ77_10015"
     CDS             complement(<1..638)
                     /locus_tag="VKJ77_10015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45644.1"
                     /translation="MSLLKVSNLEVAFDSPDAVVRAVNGVSFDLEEGSTLGIVGESGS
                     GKSQSVLAMLGLLATNGRAKGSAIYQGENLLTMPAKKLNRIRGNRLSMIFQDPMTSLN
                     PYLSIERQMTEVLELHKNMTRRAAKKRSIEMLEAVRIPEAAHRIDQYPHELSGGMRQR
                     VMIAMALLCEPQVLFADEPTTALDVTVQAQILQLLRNLQHDFGTAIVLITHDL"
     gene            complement(644..1546)
                     /locus_tag="VKJ77_10020"
     CDS             complement(644..1546)
                     /locus_tag="VKJ77_10020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC45645.1"
                     /translation="MKQGTLVPALESVLAVPVEGRSPWQDARLRFARNKAAVASLVIL
                     LLITLACAIGPMLLPNAFDSTDWNMMSSTPTFANWHLFGTDDTGRDLLVRCLVGGRVS
                     LMIGALATLTSVTLGIVWGAIAGFVGGRVDNAMMRIVDMMYAIPYLLIAILMVTLLGR
                     EFYLVVLTITVFSWMDMARVVRGQTLAIRSKEYIEAARAIGVSTSGIILRHIVPNLLG
                     IVAIYTTVTVPGVILTESVLSFLGLGVQEPMTSWGVLIQDGVGVMETAPWILLFPAAL
                     LSVTLYCINFVGDGLRDALDPKDR"
     gene            complement(1577..2497)
                     /locus_tag="VKJ77_10025"
     CDS             complement(1577..2497)
                     /locus_tag="VKJ77_10025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011659808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC45646.1"
                     /translation="MWSYTLRRVLLTVPTLLIVITVCYLLLHATPGGPFDGERKVSAE
                     VLANLQAKYHLGEPLWKQYLLYLNSLLHGDLGASFRYADWSVNDLVLRALPVSLTIGG
                     VSMVLAIVLGVALGIVAALYRNSPADYLLMIIGNAGSAFPSFVIGPVLILVFAILLKW
                     LPAGGWNGFHVRYMVLPIALLTIINVATVGRVTRGSLIEVMNTNYIRTAYAKGLSRWT
                     VVLRHALRPTMIPVVSVIGPLAIGSITAAVVTESVFSLPGIGKLIVNGAANRDYTLVL
                     GLVVLVTVVAVLLNLLVDLAYAWLDPKIRY"
BASE COUNT          545 a          794 c          766 g          448 t
ORIGIN      
        1 aggtcgtgcg tgatcagcac gatcgccgtg ccgaagtcgt gctgcaggtt gcgcagcagc
       61 tgaagtatct gggcctggac cgtgacgtcg agcgcggtgg tgggttcgtc ggcgaacagc
      121 acttgcggtt cgcacagcag cgccatggcg atcatcacgc gctggcgcat gccgccggac
      181 agctcatgcg ggtattgatc gatacgatgt gcggcttcgg gaatgcgcac ggcttccagc
      241 atctcgatcg agcgtttctt cgccgcccgg cgcgtcatgt tcttatgcag ctcaagcact
      301 tccgtcatct ggcgttcaat gctcagatac ggattaagcg acgtcatggg gtcctggaaa
      361 atcatggaca gccgattgcc gcgaatgcgg ttcagctttt tcgccggcat ggtcaacagg
      421 ttctcaccct gataaatcgc gctgcctttt gcccggccat tggttgctag cagcccgagc
      481 atggcgagca cgctctggct tttgcccgac cccgattcgc cgacaatgcc cagcgtgctg
      541 ccttcttcca ggtcgaaact cacgccgttg actgcgcgga ccacggcatc gggcgagtcg
      601 aaggcgactt ccagattact taccttgagc agtgacatga tgcttaccga tccttcgggt
      661 cgagcgcgtc gcgcagaccg tcgccaacaa agttgatgca atacagcgtc accgacaaca
      721 acgccgccgg gaacaggaga atccagggcg ccgtttccat cacgccaacg ccatcctgaa
      781 tcagtacgcc ccaactggtc atcggttctt gaacgccgag tccaagaaac gatagcacgg
      841 actccgtaag aataacgcca ggaaccgtaa ccgttgtgta aatagccaca atgccgagca
      901 ggttcgggac aatgtggcgc aggatgatgc cgctggtgga aacaccgata gcacgcgctg
      961 cttcaatgta ttccttcgac cggatggcaa gcgtttggcc gcgtacgacg cgtgccatgt
     1021 ccatccacga gaacaccgtg atggtaagca ccacgaggta gaactcgcgg ccgagcagcg
     1081 taaccatcag gatggcgatc agcaggtacg ggatcgcgta catcatgtcg acaatacgca
     1141 tcatcgcgtt gtcgacgcgg ccgcctacga agcccgcgat agcgccccac acaatgccga
     1201 gcgtgaccga cgtcagcgtt gcgagcgcgc cgatcatcag cgagacgcgg ccgccaacca
     1261 ggcagcgcac gagcaggtcg cggccggtat cgtccgtgcc gaacagatgc cagtttgcaa
     1321 acgttggcgt ggaactcatc atgttccagt cggtggaatc gaaggcgttc ggcagcagca
     1381 tggggccgat cgcgcaggcc agcgtgatca gcagcaggat cacgagactc gccacggcgg
     1441 ccttgttgcg cgcgaagcgc agacgggcgt cctgccaggg gctgcggcct tccaccggca
     1501 cggccagcac gctctcgagc gcggggacga gcgttccttg tttcattgcg gacctcatgc
     1561 tggttgactc attatttcag tagcggattt tcggatcgag ccacgcatac gcgagatcga
     1621 ccagcagatt gagtagtacc gcgaccaccg tcaccagcac gaccagtccc agcacaagcg
     1681 tgtaatcgcg gttggccgcg ccgttcacga tcagcttgcc gattcccggc aacgagaaca
     1741 cggactcggt gacgaccgct gccgtgatcg agccgatcgc gagcggaccg atcaccgaaa
     1801 ccacgggaat catcgtcggc cgcagcgcat ggcgcagtac gaccgtccag cgcgacaggc
     1861 ccttggcgta ggccgtcctg atgtagttgg tgttcatcac ctcgatcagg ctgccgcgtg
     1921 tcacgcgtcc caccgtcgcc acgttgatga tggtgagcag cgcaattggc agcaccatgt
     1981 agcgcacatg aaagccgttc cagccgccgg ccggcagcca cttcagcaag atggcgaaga
     2041 cgaggatcag caccggtccg atcacgaacg aagggaacgc actccccgcg ttgccgatga
     2101 tcatcagcag atagtccgcc gggctgttgc gataaagcgc cgcgacaatg ccgagcgcca
     2161 cgccgagcac aatggcgagc accatggata caccgccgat agtcagggac accggcaacg
     2221 cacgcagcac gaggtcgttg acgctccagt cggcgtaccg gaatgacgcg ccaagatcgc
     2281 cgtgcaggag gctgttgaga tacagcagat actgcttcca caacggctcg ccaaggtggt
     2341 atttcgcctg caggttggcg agcacttcgg cggacacttt gcgctcaccg tcaaacggac
     2401 cgcccggcgt agcatgcagc agcagatagc agacggtgat gacaatcagc agcgtaggca
     2461 ccgtcagcag cacgcgcctc aacgtataag accacatggg acatctctcc tggcggcgtc
     2521 gcgacaaagc gcgtcacggc aaccgcctct tgc
//
LOCUS       DATGBK010000709         1995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_32286, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000709 DATGBK010000000
VERSION     DATGBK010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32286"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..690)
                     /locus_tag="VKJ77_10030"
     CDS             complement(<1..690)
                     /locus_tag="VKJ77_10030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45647.1"
                     /translation="MKIDILGVQAFVAIADKGSFQNAADSLHVTQTAITQRLRKLEDF
                     LGVTLVERTTRSIALSLIGRDFLPQARRLLEELGDALLEIRETGKAERGDVSIACVPT
                     VGVQYLPRIMQEYSARYPNNRIKILDHASSAVADAVLRREAEFGINIAGAHHPELMTM
                     PLLEDQYVLICHEDHPLAKRRRVAWKQLQPYPLIFAGQVSGNRALLDTALGANGPGLQ
                     SFYEVQRSSTAV"
     gene            792..>1995
                     /locus_tag="VKJ77_10035"
     CDS             792..>1995
                     /locus_tag="VKJ77_10035"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HMC45648.1"
                     /translation="MSALDDSPVAMAARLYPEMARKLEIVRRRLDKPLTLADKVLLGH
                     LDNPDDQELIPGSSYLKLRPDRVVFQDVLGQTGMLQFMQTLRERVAVPTSIHCDHLIQ
                     ARVDGASDLRVSVLENSEVYDFLRSAAAKYGAGFWEPGAGIIHQVVLENYAFPGALII
                     GTDSHTPNAGGLGACAVGVGGADAVETIAGLPWEVLYPKHIAVYLTGALNGWTAPKDV
                     ILNVAGQLSVSGATNAIVEYIGPGARTISATGKATITNMGAELGATTSMFPSDEHMLT
                     YLNATGRGDLAPLIRQYTSALFEPDAAVEANPERYYDRVIRIDLSALEPYIVGPHSPD
                     RARPLSQLAAELKSAGNTIPEAISAALIGSCTNSSYEDMSRAADVAAQARAHGLKAVV
                     PFLVTPGSE"
BASE COUNT          420 a          662 c          553 g          360 t
ORIGIN      
        1 gaccgccgtc gaactacgct gtacttcgta gaacgactgc aaccccggcc cattcgcgcc
       61 cagcgccgta tcaagcaagg cacgattgcc gctgacctgt ccggcgaata tcagcggata
      121 cggctgcaat tgcttccacg ccactcgcct gcgtttggcg agcggatgat cctcgtggca
      181 gatcaacacg tactggtctt cgagcagcgg cattgtcatg agttcgggat gatgcgcgcc
      241 cgcgatattg ataccaaact ccgcttcgcg acgcagcacg gcatcggcca ccgccgatga
      301 cgcgtgatcg agaatcttga tccggttatt cggatatcgc gccgaatact cctgcatgat
      361 gcgcggcaaa tattgcacgc cgaccgtggg cacgcatgca atcgacacat ctccgcgctc
      421 cgccttaccc gtctcgcgta tctcaagcag cgcatcccct agctcttcca gcaaacgtcg
      481 cgcttgcggc aggaaatcgc ggccgatcag actgagcgcg atcgaacgcg tggtgcgctc
      541 gaccagcgtc acacccagaa agtcttcgag cttgcgcaag cgctgcgtga tcgcggtctg
      601 cgtgacatgc aacgagtccg cagcattctg aaagctgcct ttatcggcga tggcaacaaa
      661 agcctgaacg ccaaggatgt cgattttcat aagaaaaatg aaccaatcgg aataataaat
      721 tcattttacg cagacatcgg caatgcgcaa actggcggca ccccacaccc cttcccgcag
      781 aggaaaccac catgtccgct cttgacgact cccccgttgc aatggccgcg cgcctctatc
      841 ccgagatggc gcgcaaactc gagatcgtgc gccgccgtct cgacaaaccg ctaacgctcg
      901 ccgataaagt gctgctcggt catctcgaca accccgacga tcaggaactc atccccggca
      961 gcagctacct gaaactacgc cccgaccggg tcgtgttcca ggacgtgctc gggcaaaccg
     1021 gcatgctgca gttcatgcaa acgctgcgcg aacgcgtggc cgtcccgacc agcatccact
     1081 gcgaccactt gatccaggct cgggttgacg gggcttcaga cctgcgggta tcggtgctgg
     1141 aaaacagcga ggtctacgat ttcctgcgca gcgccgcagc caaatacggt gcgggcttct
     1201 gggaaccggg cgccggcatc atccaccagg ttgttctgga aaactacgca ttcccgggcg
     1261 cgttgatcat cggcactgat tcgcacacac cgaacgccgg cggactgggc gcgtgcgcgg
     1321 tgggtgtcgg cggcgcggat gccgtagaga ccatcgccgg cttgccgtgg gaagtgcttt
     1381 atccaaagca tattgccgtg tacctgaccg gcgccttgaa cggctggacc gcgcccaagg
     1441 acgtcatcct caacgtggca ggccagctct cggtgtccgg cgcgaccaac gcgatcgtcg
     1501 aatacatcgg ccctggcgcg cgcaccatca gcgcaactgg caaggccacc atcaccaaca
     1561 tgggcgcgga actcggcgcg acaacgtcca tgttccccag cgatgaacac atgctcacgt
     1621 acctgaacgc aacgggccgt ggcgacctcg cgccattgat caggcaatac acgtctgctt
     1681 tgttcgaacc ggatgcagcc gtggaagcca acccggagcg ctactacgat cgcgttatcc
     1741 gcatcgacct gtctgcgctg gaaccgtaca ttgtcggacc acattcgccc gaccgtgcac
     1801 gacctctgtc gcaactcgcg gccgaactta aaagcgccgg caacacgatt cccgaagcca
     1861 tttctgcagc gctcatcggc agctgcacga actcgtctta cgaggacatg agccgcgccg
     1921 ccgatgtcgc cgcgcaagct cgcgcccatg ggttgaaggc agtcgtcccg ttcctcgtga
     1981 caccgggttc ggaac
//
LOCUS       DATGBK010000710         2492 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_55148, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000710 DATGBK010000000
VERSION     DATGBK010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2492
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55148"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..933)
                     /locus_tag="VKJ77_10040"
     CDS             complement(<1..933)
                     /locus_tag="VKJ77_10040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018432735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HMC45649.1"
                     /translation="MASLTHHWIRKLTESRKPAYLLIPELIEEDLASGRLRPRDRLPG
                     LRDLAEELQLNYTTVARAYAEARKRGLLDSRAGSGTFVRGRTATLPLSGGSSVEMTMN
                     MPPEPAELAARLRDSAARLFSATDPYRLLRYQDFGGTADDRAAGTKWLKRRFDDCDED
                     KVLVCPGIHSALVALVSQLARPGGTICLDTLAYPGIKAIAAQLGVRLQALARDDDGPL
                     AHAFEALCKSDKPSAFYCNPTIQNPSTVTLSSKRREALADVALRYSVPIIEDDAYGML
                     PVQAPDALATLAPDLTYYVTGFSKSFGAGLRVAYI"
     gene            1370..1852
                     /locus_tag="VKJ77_10045"
     CDS             1370..1852
                     /locus_tag="VKJ77_10045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSMEG_0572/Sll0783 family nitrogen starvation
                     response protein"
                     /protein_id="HMC45650.1"
                     /translation="MPAVNIPMHKKGDYLVDYEEKVFEDVKAAPGEKALVTFHTVAFE
                     GSIGFVNLLQATRLLRKGFETSVLLYGPGVTLGLQRGFPTLGDEAFPGHLNFNKQIQK
                     FMEEGGKVYACRFALQALYGQGEASLIEGIKPISPLDVLDIQLLHRKDGALIINTWTV
                     "
     gene            1890..>2492
                     /locus_tag="VKJ77_10050"
     CDS             1890..>2492
                     /locus_tag="VKJ77_10050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011880178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HMC45651.1"
                     /translation="MPDKRIVRAAAVQIAPDLERPGGTLEKVLETIDDAARQGVQLIV
                     FPETFLPYYPYFSFVRAPVASGAEHMRLYDEAVVVPGPVTHAVAERARRHGMVVVLGV
                     NERDHGSLYNAQLIFDTDGELLLKRRKITPTFHERMIWGMGDAAGLKVAETRIGRVGA
                     LACWEHYNPLARYALMTQHEEIHCSQFPGSLVGPIFGEQIE"
BASE COUNT          547 a          759 c          711 g          475 t
ORIGIN      
        1 aatgtatgca acgcgcagac cggcgccaaa actcttggag aacccggtga cgtagtaagt
       61 cagatcgggg gccaacgtag ccaatgcatc gggcgcctgg accggcaaca tgccgtacgc
      121 atcgtcttcg ataatcggca cgctgtacct tagcgcgaca tcggcaagcg cctcgcgccg
      181 cttcgacgac agtgtcaccg tgctcggatt ctggatcgta ggattgcaat agaacgcgct
      241 gggtttatca ctcttgcata gcgcctcgaa cgcatgggcc agcggtccgt cgtcatcgcg
      301 tgccagcgcc tgcaaacgca cacccagttg cgccgcaatc gccttgatgc ccgggtaagc
      361 cagcgtatcg aggcaaatgg tcccgcccgg ccgcgcaagc tgcgacacca gcgccaccag
      421 cgcgctatga atgccgggac agaccaggac cttgtcttca tcgcaatcgt cgaaacgacg
      481 cttcagccac ttcgttccgg cagcacgatc gtcagcagtg ccaccgaaat cctgataccg
      541 caacaaccga tacgggtccg tcgccgaaaa caatcgcgct gctgaatcgc gcaagcgcgc
      601 ggcgagttcc gccggctcgg gcggcatgtt catggtcatc tcgacactgc tgccgccgga
      661 cagcggcagc gtcgcggtcc ggccgcgtac gaacgtgccg ctgccggcac gcgagtcgag
      721 cagccctctt ttgcgcgctt ccgcgtaggc ccgcgccacg gtcgtgtagt taagctgcaa
      781 ttcttccgcc agatcacgca gtcccggcag tcgatcgcgc ggccgtaaac gcccgctcgc
      841 cagatcttct tcaattaact cgggaatcag caaataagcc ggcttgcggc tttctgtcag
      901 ttttctgatc cagtgatgag taagactggc catgaaacgc tctcgaataa atacggttaa
      961 aaaacgatag cacgccggcg atcgaaaaaa ataaattgat cgcattcagt gacattaagt
     1021 gatcgtatgg agaatgcgat aaatcagggg tcaatgcaca tatccggtgt ttattgcacc
     1081 agaccggcgc gaccgcacca ccgtgatcac gccatgctgg tgcaacccca tcaccccgtc
     1141 aggccagaaa ccaggccccg aaggactctt cgcgattgtc atcaaaaata tttcactgct
     1201 ccgcgcgcac tgatcgtttg aatgatcggg tattgatcgc attaacacac tcattgaatg
     1261 gcacgccggt tgcattaaca gcttcgtatc ccgcagtttg gcgtcgggtt aaaactgggt
     1321 taaaaactcc ggcgccactg attaaattgc ccatttactg gagattagaa tgcctgccgt
     1381 caatatcccg atgcacaaga aaggcgatta ccttgtcgat tacgaagaga aggtgtttga
     1441 agacgtcaag gccgcgccgg gcgagaaggc gctggtgaca ttccacacgg tcgcattcga
     1501 aggttccatc ggctttgtca acttgctgca agccacccgg ctgctgcgca aaggcttcga
     1561 aacctcggtg ctgctgtatg ggccgggcgt gacgctcggg cttcaacgcg gcttcccgac
     1621 gctcggcgac gaggcgtttc ctggccatct gaacttcaac aagcagatcc agaagttcat
     1681 ggaagaaggc ggcaaggtct acgcatgccg ctttgcgcta caagctttgt acgggcaggg
     1741 agaagcgtcg ctaatcgaag gcatcaagcc gatcagcccg ctcgacgtgc tcgacatcca
     1801 gttgctgcat cgcaaggacg gcgcgctgat catcaacacc tggaccgtct gaagctgcgt
     1861 ctgaagcctc tcatcaacac ggaacgacca tgcctgacaa gagaatcgtc cgcgccgccg
     1921 cggtccagat agcaccggac ctcgaacggc ccggtggcac gctcgagaag gtcctcgaaa
     1981 cgatcgacga cgctgcacgc cagggcgtgc agctcatcgt cttccccgag accttcctgc
     2041 cctactaccc gtacttttcg ttcgtgcggg cgccggtggc gtcgggtgcc gaacacatgc
     2101 ggctctatga cgaagcggta gtcgtgcccg ggccggtgac gcacgcggta gcggagcggg
     2161 cacggcggca cggcatggtc gtcgtgctcg gcgtgaacga gcgcgatcac ggcagcttat
     2221 acaacgcaca actgatcttc gataccgacg gcgagttgct gctcaagcgc cgcaaaatca
     2281 ccccgacgtt tcacgaacgc atgatctggg gcatgggcga cgcggccgga ctgaaggtag
     2341 cggagacgcg catcggccgg gtgggtgcac tcgcttgctg ggaacactac aacccgctcg
     2401 cgcgttatgc gctgatgacg cagcacgaag agatccattg cagccagttt ccaggctcgc
     2461 tggtaggtcc cattttcggt gaacagatcg aa
//
LOCUS       DATGBK010000711         2879 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_194254, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000711 DATGBK010000000
VERSION     DATGBK010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194254"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..655)
                     /locus_tag="VKJ77_10055"
     CDS             complement(<1..655)
                     /locus_tag="VKJ77_10055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010398512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45652.1"
                     /translation="MSIIDVPNDPLTRVIAPYGAGPAELALAIGGLAIGTGEFASMTI
                     LPVIANGLGTSLPTTGHIISAYALGVVIGAPLITIFFAKIPRRAMLIGLMLMFAFGNL
                     LSALAPNYALLLIARFISGVPHGAYFGVAALTAASLVPPDRRARAVGRVMLGLTIANI
                     FGVPLATWLGQWLGWRADFLLVGTLGILTMIGVRIFLPPIHAGGATPRRELGVFRRLQ
                     "
     gene            complement(777..1808)
                     /locus_tag="VKJ77_10060"
     CDS             complement(777..1808)
                     /locus_tag="VKJ77_10060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015604135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC45653.1"
                     /translation="MSSAARRIDILAFADVQLLDVAGPLQAFASANEISLARGADAPY
                     IARVVATAAGEIQSTAGLGLFAQPLPTAQQTTDTLIVAGGRGVHAASKDLAQVAWVRE
                     RAAQCRRVASVCTGAFLLAAAGLLDERRAVTHWAHCEHFGQRYPAVRVDPAPIFIRDG
                     AVWTSAGVTAGIDLALALIEDDLGSALALDVARELVVFLKRPGGQAQFSATLSLQKTG
                     DRFGDLHAWIAENMAADLSIATLAERAGMSERSFVRHYRAQTGITPARAIDQLRLEAA
                     RRLLGDTSFPVKRVAARCGFGSEETMRRSFLRSMGVTPQAYRERFSAGGDGEVDDTHD
                     PRRTMVTQD"
     gene            1912..2595
                     /locus_tag="VKJ77_10065"
     CDS             1912..2595
                     /locus_tag="VKJ77_10065"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009915752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HMC45654.1"
                     /translation="MTLHIGFLVFPRVQQLDLTGPHDVFASVPGATVHLIGKTLDPIN
                     ASSGLVLTPTITYADCPRLDVLCVPGGVGVGELMEDDITLDFIRRQAAQARFITSVCT
                     GALVLGAAGLLRGRRATTHWAAHHFLESFGAIPVKERVVQDGNLMTGGGVTAGIDFAL
                     TLLIGLIGETDAQAIQLQLEYAPAPPFNSGTPDTAPKAVVDLVWSRSEAARAQRTAIV
                     ERATARLNG"
     gene            complement(2655..>2879)
                     /locus_tag="VKJ77_10070"
     CDS             complement(2655..>2879)
                     /locus_tag="VKJ77_10070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45655.1"
                     /translation="DGSAAHLLANPVVRAPRETHVIHEAQVRETHAQQEVREPVVTFQ
                     PVWNAGAESSESKDPDNGAPIRPAGRGEAH"
BASE COUNT          537 a          887 c          939 g          516 t
ORIGIN      
        1 cttgcaggcg cctgaacacg ccaagctcgc ggcgcggcgt agcgccgccc gcgtgaatgg
       61 gcgggagaaa gatgcgtacg ccaatcatcg taagaatacc gagcgtgccg acaagcaaaa
      121 aatccgcgcg ccagccgagc cattgaccga gccaggtcgc gagcggcacg ccgaaaatat
      181 tggcgatcgt caggcccagc atcacgcgtc cgactgctcg tgcgcgccgg tcgggcggta
      241 cgagcgaggc cgccgtcaac gccgcgacac cgaaatacgc gccatgcggc acgccggaaa
      301 taaagcgcgc gatcagcaac agcgcgtaat tcggcgcgag cgcgctgagc agattgccga
      361 acgcgaacat cagcatcagt ccgatcaaca tcgcgcggcg cgggatcttc gcgaagaaaa
      421 tggtgatgag cggcgcgccg atcactacgc ccaacgcata cgcgctgatg atatggcccg
      481 tggtgggcag cgaagtaccg aggccgttcg cgatgaccgg caggatggtc atggacgcga
      541 actcacccgt gccgatagcc aggcccccaa tggcgagggc gagttcggcg ggacccgcgc
      601 catagggcgc gatcacgcgc gtaagcgggt cgttggggac atcgataatg gacattgagg
      661 aaaagttgtg agtgtgagcg aagcgcaatg cagcattatc gccaaagaat taatcttccg
      721 catccgcaaa ggctcgaacg gccgtgctga atagcgttgc tgcggtgccg taggcgctag
      781 tcctgcgtga ccatcgtgcg gcgtgggtcg tgtgtgtcat cgacctcgcc gtcgccgcct
      841 gcggagaagc gttcacggta agcctgcggg gtgacaccca tggaacgcag gaagctgcgc
      901 cgcatggttt cctccgatcc aaacccgcag cgcgcggcca cgcgcttgac cggaaatgag
      961 gtatcgccaa gcaggcgacg tgcagcttcc aggcgtaatt gatcgatggc gcgcgccggc
     1021 gtgatccccg tttgcgcccg atagtggcgc acgaagctgc gttcgctcat gcccgcgcgc
     1081 tcggccagcg tcgcgatcga caggtcggct gccatgtttt cggctatcca cgcgtgcagg
     1141 tcgccgaagc ggtcgccggt tttttgcaac gacagcgttg cgctgaactg cgcctggccg
     1201 cccggtcgct tgaggaacac caccagttcg cgtgctacat cgagcgcgag cgcgctgccg
     1261 agatcgtcct cgatcaacgc gagcgcgaga tcgatgccgg ctgtcacgcc cgccgatgtc
     1321 cagaccgcgc cgtcacgaat aaaaatgggc gcggggtcca cgcgaaccgc cggataacgc
     1381 tgcccgaagt gttcgcaatg cgcccagtgc gtgaccgcgc gacgctcatc gagcaagccg
     1441 gcagccgcca gcaaaaacgc gcccgtgcat accgatgcaa cccgccggca ctgtgccgcg
     1501 cgctccctga cccaggccac ctgcgcaaga tctttcgatg ccgcatgcac gccgcgtcca
     1561 cccgcgacga tcagcgtgtc tgtcgtctgt tgagcggtgg gcaagggctg ggcgaacagg
     1621 ccgagacccg cggtgctttg aatctccccc gcggctgtcg ctacaacacg tgctatgtaa
     1681 ggtgcgtcgg cgccgcgcgc cagcgagatt tcgttggcgg aggcgaatgc ctggagcggt
     1741 ccggcgacgt cgagcagctg gacgtctgcg aacgcaagaa tgtcgatacg gcgcgcagcg
     1801 ctgctcatgg tttgaaaccg ggttggcgtg aaacgagggt tgattgacaa tgtcgccaaa
     1861 tcgtagcgag gtattctggg tgcgtctacc tccttttaaa ggttcatcgc catgacgttg
     1921 catatcggtt tcctcgtctt tccacgcgtt cagcaactcg acctgaccgg tccgcatgac
     1981 gtgttcgcgt cggtgccggg cgcgactgtc cacctgattg gaaaaacgct tgatccgatc
     2041 aacgcgagca gcggtctcgt gctgacgccc accattacgt acgccgactg ccctcgactc
     2101 gatgtcttgt gcgtgccggg tggagtgggt gtcggcgagt tgatggagga cgacatcacg
     2161 cttgatttca tcaggcggca ggctgcgcag gcccgcttca tcacgtcggt gtgtacgggt
     2221 gcgctggtgc tgggagcggc tggtctgctg cgcggacggc gcgcgaccac gcactgggcg
     2281 gcccatcatt tcctggaaag ctttggcgcc attcccgtga aagaacgcgt tgttcaggat
     2341 ggcaatttga tgacgggcgg cggcgtgacg gcgggtatcg atttcgcgct gacgcttctt
     2401 atcggcttga tcggcgagac cgacgcgcag gccattcagc ttcaactgga atatgcgccc
     2461 gctccgccct ttaattcagg tacgcccgac acagcgccga aggcggtggt ggatctggtg
     2521 tggagtcgca gcgaagcagc gcgtgctcag cgcactgcaa tcgttgaacg cgcaacggcg
     2581 cgattgaatg ggtaggtgat agctgcgagg cgttgacgca gagtaccgtc tccggtcaag
     2641 cctcgcagtc catctcaatg tgcttccccg cgacccgcag ggcgaatggg cgcgccgttg
     2701 tctggatcct tcgactctga cgactccgcg ccggcattcc aaacgggctg gaatgtcacg
     2761 acaggctcac gcacttcctg ctgtgcatgt gtctcgcgta cctgcgcctc gtgtattacg
     2821 tgggtttcgc gcggtgcacg cacgaccggg ttcgcgagca ggtgcgcagc gctaccgtc
//
LOCUS       DATGBK010000712         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_309543, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000712 DATGBK010000000
VERSION     DATGBK010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309543"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..948)
                     /gene="glcE"
                     /locus_tag="VKJ77_10075"
     CDS             complement(<1..948)
                     /gene="glcE"
                     /locus_tag="VKJ77_10075"
                     /EC_number="1.1.99.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycolate oxidase subunit GlcE"
                     /protein_id="HMC45656.1"
                     /translation="MTEEDIVASWSERVRAATASNTPLRIRGGGTKDWYGQTLQGEIV
                     DTRAHRGIIEYDPAELVITAKAGTPLSEIEARLDECGQMLPFEPPHFGQNATLGGCIA
                     AGLAGPRRAAAGAPRDFVLGAVVMNGQGHVLHFGGQVVKSVAGYDVSRLLAGSLGTLG
                     MILEVSVKVLPKPVAEATLKFEMNDTDAVRKLNEWSGHPLPLTGSAWRDHTLALRLGG
                     AEAAVKAARTSLGGEVVDAVEAERFWCGLREQSDPFFAVIPPKSALWRLSLPSIAEPM
                     QLPGTHLMEWGGAQRWWITDADPQTVRISAKQAGGHATIF"
     gene            complement(1119..>1520)
                     /locus_tag="VKJ77_10080"
     CDS             complement(1119..>1520)
                     /locus_tag="VKJ77_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009913510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HMC45657.1"
                     /translation="LARIEEMEKKYALRCMNVFHAGDGNMHPLILFNGNDLDEWHRAE
                     AFGSDILETCVELGGTVTGEHGVGIEKINSMCVQFSPEERDTFHAIKRAFDPPGLLNP
                     DKGIPTRARCAEYGKMHIRGGLLPHPEIPRF"
BASE COUNT          270 a          500 c          452 g          298 t
ORIGIN      
        1 gaagatggtc gcgtggccac cggcctgctt ggcgctgatg cgcacggttt gcggatcggc
       61 gtcggtgatc caccagcgtt gcgcgccgcc ccattccatc agatgcgtgc cgggaagctg
      121 catcggctcg gcaatcgatg gcagcgagag ccgccacaaa gcggatttcg gcggtatgac
      181 cgcgaagaac ggatcggatt gctcgcgcaa accgcaccag aaacgctcgg cttcgaccgc
      241 gtcgaccact tcgccgccca acgatgtccg cgccgctttc accgctgctt ccgcgccgcc
      301 caggcgcaag gcgagcgtgt ggtcgcgcca cgcgctgccg gtcagcggca acggatggcc
      361 gctccactca ttgagcttgc gcacggcgtc ggtgtcgttc atttcgaact tgagcgtggc
      421 ttcggcgacg ggtttcggca gcactttcac cgacacctcc aggatcatcc ccagcgtgcc
      481 gagagacccc gcaagcagtc gcgagacgtc gtagcccgcc acgctcttca ctacttgacc
      541 gccgaaatgc agcacgtggc cctggccgtt catcaccacg gcgccgagca cgaaatcgcg
      601 cggcgcgccg gccgcggcgc gccgcgggcc ggcgagtccg gctgcaatac agccgccgag
      661 cgtggcattt tgcccgaagt gcggaggttc gaacggcagc atctggccgc attcatccag
      721 ccgcgcttcg atctcgctga gcggcgtgcc ggctttcgcg gtgatcacga gttcggccgg
      781 gtcatattcg ataatcccgc gatgcgcccg cgtatcgact atctcgcctt gcagcgtctg
      841 cccgtaccaa tccttcgtgc cgccgccgcg aatccgtagc ggggtgttgc tcgccgtcgc
      901 ggcgcgtaca cgctcggacc agctcgcaac aatgtcttcc tctgtcatgg tgtcccgcgt
      961 tttatggctc ttgggtcagt gtatcggcgt gttcccgcac ggccactcgt ataaacgtgg
     1021 atacgtgtcc gggcttgaac gccaagaaat aaccgccgat gcctgaaagt gacgtctatc
     1081 tacacgcaac gtttacaagc gccgcctaaa cacgccgctt aaaagcgtgg aatctcggga
     1141 tgcggcagca agccgccgcg aatatgcatt ttcccgtact cggcgcaacg cgcgcgcgtc
     1201 gggatgcctt tgtcgggatt aagcaggccg gggggatcga aggcacgttt tatcgcgtga
     1261 aacgtatcgc gttcttcggg cgaaaactgg acgcacatgg agttgatctt ttcgataccc
     1321 acgccatgct cgcccgtcac cgtgccgccc agttccacgc acgtttccag gatgtccgaa
     1381 ccgaatgcct cggcccggtg ccattcgtcg agatcattgc cgttgaacag gatcagcgga
     1441 tgcatgttgc catcgccggc atggaaaaca ttcatgcaac gcagtgcgta ctttttttcc
     1501 atctcttcaa tacgcgccag
//
LOCUS       DATGBK010000713         2295 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_309562, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000713 DATGBK010000000
VERSION     DATGBK010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309562"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..643
                     /locus_tag="VKJ77_10085"
     CDS             <1..643
                     /locus_tag="VKJ77_10085"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006759749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HMC45658.1"
                     /translation="IHGSLLPRWRGAAPIHRALEAGDAETGITLMQMDAGLDTGAMIV
                     KGHIAITSTDTTATLHDRMAQLGADLIVEALRDIERDGALPATPQPQDGATYAEKIAK
                     HEAALDWRRPASMLARQIRAFDPFPGAFGTLDGVVVKIWAAEPVELTGDAEAGVIVES
                     GAEGVVVACGQGGLRLTQLQKPGGKRLPVREFLAGSPIVKGQRFELREVAPGA"
     gene            735..1394
                     /locus_tag="VKJ77_10090"
     CDS             735..1394
                     /locus_tag="VKJ77_10090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010113212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HMC45659.1"
                     /translation="MLGITGFTLFIVAVMLLSVTPGPDTAYIVGRSVAQGRGAGVVSA
                     LGIALGCIVHTLACAFGLTALLAASVTAFTVVKFAGAIYLIYLGVRLIFAKPAAAKTS
                     DKHSEAEETRVHAAPKSLQQLFTQGFVTNVLNPKVVLFFVSFIPQFVAVDSTHKTLAF
                     LALGLVFVLVSTFWNTFVAWIAGSVTQRFSGKPSVKLWLDKVVGSAFVGLGIKLATSH
                     R"
     gene            1540..>2295
                     /gene="htpX"
                     /locus_tag="VKJ77_10095"
     CDS             1540..>2295
                     /gene="htpX"
                     /locus_tag="VKJ77_10095"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HMC45660.1"
                     /translation="MFNWVKTAMLMAAITALFVVIGGMIGGSKGMMLALIVALAMNFF
                     SYWFSDKLVLKMYNAQEVDEASAPQFYRMVRELATRAQLPMPKVYLIDENAPNAFATG
                     RNPEHAAVAATTGILRVLSERELRGVMAHELAHVKHRDILISTVSATMAGAISALANF
                     AMFFGGRDSDGRRSNPIASIAVAMLAPLAGALIQMAISRAREFEADRGGAQISGDPQA
                     LASALEKIHAYAAGVPFPTAEQHPATAQMMIMNP"
BASE COUNT          430 a          646 c          743 g          476 t
ORIGIN      
        1 tatccacggg tcgctgctgc cccgctggcg aggcgcagcg ccgattcatc gtgcgcttga
       61 agccggtgac gccgagacgg gcatcacgtt gatgcaaatg gatgcagggc tggacaccgg
      121 cgcgatgatc gtcaaaggtc acatcgcgat cacgtccacc gacaccaccg ccacgctgca
      181 cgaccggatg gcacagctcg gtgctgatct gatcgtggaa gcattgcggg atatcgagcg
      241 cgacggtgcc ttgcccgcca cgccccagcc gcaggacggc gcgacgtacg ctgagaagat
      301 cgccaagcac gaagcggcgc tcgactggcg tcgtccggcg agcatgctgg cgcgtcagat
      361 tcgcgcgttc gatccgtttc ccggcgcgtt cggaacgctc gatggcgtgg tcgtgaagat
      421 atgggccgcc gagccggtgg aattgacggg tgatgcagag gccggcgtga ttgtggaaag
      481 tggcgcggag ggcgtcgtgg ttgcgtgcgg tcagggcggt ttgcgtctta cacagttgca
      541 aaagcccggc ggcaagcgac tccccgtgcg cgagtttctc gctggatcgc ctattgttaa
      601 agggcaacga ttcgaacttc gagaagtcgc gccgggtgcc tgaaacaatg gctgcgttgg
      661 cgtctgcgta tttcccgcgt cgtcgctgaa acggctaacg ccagataaaa acaaaaatca
      721 tcaaaggtct cacgatgctt ggaatcaccg gtttcacgct atttatcgtc gccgtcatgt
      781 tgctgagcgt gacgccgggg ccggatacgg cgtacatcgt cggccgaagc gttgcgcaag
      841 gacggggcgc gggcgtggtg tcggcgctgg gcattgcgct cggctgcatc gtgcatacgc
      901 tggcctgcgc gtttgggctg acggcattgc tggccgcatc ggtgacggca ttcactgtcg
      961 tcaagttcgc gggagcgatt tatctgatct atctcggcgt gcggctgatt ttcgcgaagc
     1021 cggcggccgc gaaaaccagt gacaagcaca gcgaagcaga agaaacccgc gttcacgccg
     1081 cgccgaaatc gctgcagcaa ctcttcacgc aaggcttcgt cacgaatgtg ctgaacccaa
     1141 aagtggtgct gttttttgtc tcgttcatcc cgcaattcgt tgctgtcgac agcacacaca
     1201 agacgcttgc cttcctcgcg ctcggtttgg tgttcgtgct ggtcagcacg ttctggaaca
     1261 cctttgtggc gtggatcgcg ggtagcgtga cgcaacgctt ctccggcaag ccgagcgtca
     1321 agctatggct ggacaaggtg gtgggcagcg cgttcgtcgg attgggcatc aagctggcga
     1381 cttcgcacag gtgattgaat ttttctgaga tgcccttatc taacattttt cttacaatct
     1441 gggctgatga atcgttgaac gattgtttgg tcaggcaaaa aaggccgttt cggccgctcg
     1501 cgcttaacgc gcattgatat tgggtgagga gttcaagaca tgttcaactg ggtcaaaacg
     1561 gcgatgctga tggcagcgat cacggccctt tttgtcgtga tcggaggaat gatcggcggc
     1621 agcaagggga tgatgcttgc gctgatcgtc gccctcgcta tgaatttctt ctcgtactgg
     1681 ttctccgaca agctcgtgct gaagatgtac aacgcacagg aagtggacga agccagcgcg
     1741 ccgcagtttt atcggatggt tcgcgagctt gccacgcggg cgcagttgcc gatgccgaag
     1801 gtgtatctca tcgacgaaaa cgcgcccaac gcgtttgcaa ccgggcgtaa tccggaacac
     1861 gcggctgttg cggcgactac cggcatcttg cgggtgttgt ccgagcgcga gttgcgcggc
     1921 gtgatggcgc atgaattggc gcacgtgaag caccgcgaca tcctgatctc gacggtttcg
     1981 gcgaccatgg ccggagcgat ctcggcgctg gccaacttcg ccatgttctt tggcggcagg
     2041 gattccgacg gccggcgctc aaatccgatc gccagtattg ctgttgccat gctggcgccg
     2101 ctggcgggtg cgctgatcca gatggcgatc tcgcgggcgc gggaattcga agccgatcgc
     2161 ggcggcgcgc agatttccgg cgatccgcaa gcgctcgcca gcgcgctcga gaaaatccat
     2221 gcgtatgccg cgggcgtacc gttcccgaca gccgagcagc atcccgcgac cgcgcagatg
     2281 atgatcatga acccg
//
LOCUS       DATGBK010000714         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_170918, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000714 DATGBK010000000
VERSION     DATGBK010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170918"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1421
                     /locus_tag="VKJ77_10100"
     CDS             <1..1421
                     /locus_tag="VKJ77_10100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45661.1"
                     /translation="IGRIDDTAFDAVTAAAENAARARLEASAAANEAATARHNGEGGK
                     SILGTALALACITLAASVGFAIAHIWEWAGALLAFAFVFAAIVFTQGRGRARSRRDAV
                     RKQKRADDALAAERIAASAVAAVLDPLGLPNIDELTRRRDRLRELETRARAAERADER
                     ARTMRITADTAAAAFDKLATLLLPDITGERAGLRAAANVRAARKRERNGIDAHLNAIE
                     LQKASYLGNDDQYALETELEELIRSGVNPQDVPPSTNARIVEAERANIAESLRVAGDT
                     LSRLQGELQNAETHVADLAAMDEELARLQTDIARLEAFERAIVLGKEILEQRTEEAHQ
                     AFARRLEDYAAQTLATITGGRYTQVFVDPTTLIIRVRVPENNAIVALENLSAGTRDQT
                     YLVVRFAMARMFAEGMETPPLLLDDPFAYWDAERIERCLPIIVAAAQDAQTIVFTSSE
                     EFANAAVASGAQRIDLAAPALL"
     gene            complement(1375..>1709)
                     /locus_tag="VKJ77_10105"
     CDS             complement(1375..>1709)
                     /locus_tag="VKJ77_10105"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005880760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HMC45662.1"
                     /translation="IIRNRLKVASTIKNARAFLAVAEEFGSFDAYLWGFVGNKPVVNH
                     RKSMSELPATSDLSDALSQDLKKRGFTFVGSTIMYSFMQAVGMIDDHLASCFKAKRAR
                     PSRSAARR"
BASE COUNT          362 a          538 c          514 g          295 t
ORIGIN      
        1 atatcggccg gattgacgat accgcttttg acgcggttac ggcagcggcc gaaaacgccg
       61 cgcgcgcgcg actagaagca tcggccgccg caaacgaagc cgcaaccgca cggcacaacg
      121 gcgaaggcgg gaagagtatc ctcggcaccg cactcgcgct cgcctgcatc acgcttgcgg
      181 cgtcggtggg ctttgcgatt gcacacattt gggaatgggc aggcgcgctt ctcgcgttcg
      241 cattcgtctt tgccgcgatc gtcttcaccc aaggccgcgg ccgcgcgcgc tcacgtcgcg
      301 acgcggtacg caaacagaaa cgtgcggacg atgcgttggc tgccgagcgc atcgcggcaa
      361 gcgccgtggc agcggtcctc gatccgcttg gattgccgaa tatcgatgag ctaacgcgcc
      421 ggcgcgaccg ccttcgcgaa cttgaaacgc gcgcacgcgc agcagaacgc gcggacgagc
      481 gcgcccgaac gatgcgcatc accgccgaca cggcggcagc cgcgttcgac aagctcgcga
      541 cgcttctgct gcccgatatc acgggcgagc gcgccggtct gcgcgctgcc gcaaacgtac
      601 gcgcggcccg taagcgcgaa cgaaacggca tcgacgcgca tctcaatgcc atcgaattgc
      661 aaaaagcatc gtatcttgga aacgacgatc agtacgcgct ggaaaccgag ctggaagagc
      721 tgatccggtc gggcgtcaat ccgcaagatg tccccccatc gacaaatgcg cgcatcgtcg
      781 aagcggaacg ggccaacatc gcggagtcgc tgcgggtggc gggcgacacg ctttcgcgcc
      841 tgcaaggcga actgcaaaac gcggaaacgc acgttgccga tctcgctgcg atggatgaag
      901 agctcgcgcg cctgcaaacc gacatcgcgc gactggaggc gttcgaacgc gcgatcgtcc
      961 tgggcaagga aattctcgaa cagcgaaccg aggaagcgca tcaggccttc gcccgccggc
     1021 tcgaagatta tgccgcacag acgttggcaa cgattacggg cggccgctat acgcaagtct
     1081 tcgtcgatcc gacaacgctg atcattcgcg ttcgcgtacc ggaaaataat gcgattgtcg
     1141 ccttggaaaa cttgtcggcc ggaacgcgcg accagaccta cctcgtcgtt cgcttcgcga
     1201 tggcgcgcat gttcgccgaa ggcatggaga cgccgccgct tttgcttgac gatccgttcg
     1261 cctactggga tgccgaacgc atcgaacggt gtttacccat catcgttgcg gccgcacagg
     1321 atgcgcaaac gatcgttttc acgtcaagcg aggaatttgc gaatgcagcc gtcgctagcg
     1381 gcgcgcagcg gatcgacttg gccgcgcccg ctttgcttta aagcacgaag ccagatgatc
     1441 gtcgatcatg cctacggctt gcatgaacga atacatgatc gtcgagccaa cgaacgtaaa
     1501 cccgcgcttc ttcagatcct ggctgagcgc gtcggagaga tcgctggttg ccggcaattc
     1561 gctcatcgat tttcggtgat taacgaccgg cttattgccg acaaaacccc acagatatgc
     1621 gtcaaacgaa ccgaactctt cggccaccgc tagaaacgca cgcgcgttct tgatcgtcga
     1681 tgcgaccttg agccgattgc gaatgatgc
//
LOCUS       DATGBK010000715         5152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_332696, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000715 DATGBK010000000
VERSION     DATGBK010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5152
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332696"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(280..924)
                     /locus_tag="VKJ77_10110"
     CDS             complement(280..924)
                     /locus_tag="VKJ77_10110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006483545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylsarcosine amidohydrolase"
                     /protein_id="HMC45663.1"
                     /translation="MSDIQSHAESGVYKQQGFGTPLPVKGNIGLLIVDFVVGFADPKT
                     FGGGNIAPAIERTVHLLAAARRHGWPVAHSRIVYAADGSDDNVFSLKVPGMATLTEDH
                     PNSAIVPELTPAAGELVVRKTVPSAFFGTQLAPWLSQRAVQTLIVAGAVTSGCVRASV
                     VDAMSHGFRPLVVSDCVGDRAIGPHDANLFDMQQKYAAVMTLDEAFATIEKRQA"
     gene            complement(961..1995)
                     /locus_tag="VKJ77_10115"
     CDS             complement(961..1995)
                     /locus_tag="VKJ77_10115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-dihydroxypyridine 5,6-dioxygenase"
                     /protein_id="HMC45664.1"
                     /translation="MPISDYEMIAAWKQVLTLSKLQAGQTVTILTSASTHPQTLSSAL
                     IATQSMGAIVNRLDLLPVNGEKALSRDSLAYLGTTPLTGNLAAIAALKASDLVLDLMT
                     LLFSPEQHEILATGTKILLAVEPPEVLARLVPTEADRTRVRAAAERIKASREMRVKSK
                     AGTELVCPLGEFPAISEYGFVDEPGRWDHWPSGFVLTFPNEGQASGQIVIDRGDILLP
                     QKRYVNDPITLTVENGYATRIDGGVDAALLSDYMASFNDPEGYAISHIGWGLQPRARW
                     STLGLYDREATIGMDARAFEGNFLFSLGPNNEAGGKRTTTCHIDIPLRHCDVMLDGVA
                     VVRDGVVMDR"
     gene            complement(2051..2878)
                     /locus_tag="VKJ77_10120"
     CDS             complement(2051..2878)
                     /locus_tag="VKJ77_10120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC45665.1"
                     /translation="MNSTFLYGANVNANGIRQHYLRYGGTEGVRASRPAVIVIPGITS
                     PAVTWGFVGETLGRQFDTYVLDVRGRGLSEASSTLDYSLDAQAADVIALAHSLGLEHY
                     ALVGHSMGARIAIRAARSAPKGLTRTVLVDPPVSGPGRRAYPAKLPWYVDSIRLALKG
                     IDADGMRAFCPTWTEDQLRVRAQWLHTCDERGMLESFEGFHTDDIHADLPLLRVPSLL
                     ITAARGDVVLDVDVQEMQTLAPGLLHTRVPDAGHMIPWDNEAGFYEAFGDFLGAKLV"
     gene            complement(2933..3685)
                     /locus_tag="VKJ77_10125"
     CDS             complement(2933..3685)
                     /locus_tag="VKJ77_10125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006224190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp/Glu racemase"
                     /protein_id="HMC45666.1"
                     /translation="MTKTFRIGQIVPSSNTTMETEIPAMLLARQSIRPERFTFHSSRM
                     RMKKVVKEELAAMDAESDRCALELSDARVDVLGYACLVAIMAMGHGYHRVSQKRLHER
                     TVENGGAAPVITSAGALVEALKVIGAKRIVVVAPYMKPLTELVVDYIRNEGFEVVAYR
                     ALEIPDNLEVGRHDPRLLPDFVKTLPYQDVDAIVLSACVQMPSLAAVPQVEAMTGKPV
                     ITAAIATTYAMLRELDLERVVPGAGALLSGAY"
     gene            4004..>5152
                     /locus_tag="VKJ77_10130"
     CDS             4004..>5152
                     /locus_tag="VKJ77_10130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010094809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HMC45667.1"
                     /translation="MSKPRIAIIGAGLGGTAAAALMQRAGYSVRLYEQAPAFSRLGAG
                     IHLGPNVMKIMRRMDCEDALNVMGSHPDYWYSRDWKTGEAIAQIPLGEFALKEYGASY
                     LTVHRGDFHSLMTEAVAPGTIEFNKCLSGIEELDNEVRLTFADGSVETADIVIGADGV
                     NSKIRDHLLGAEPPRYTGYVAHRAVFPASLLGTDPFDLCVKWWSEDRHMMVYYVTSKR
                     DEIYYVTGVPQAEWPAGQSVAPSSRDEMREVFAGYHPSVQKLIDATPEVTKWPLLERD
                     PLPLWSRGRLVLLGDACHPMKPHMAQGAAMAIEDAAMLTRCLDEVGATDYAGAFALYE
                     ANRSERASKVQLVSHNNTWLRTNEDPAWVFAYDVFNEPLKSPSAKQATT"
BASE COUNT         1028 a         1485 c         1609 g         1030 t
ORIGIN      
        1 gaacgcgaga attgagtcat ggatttcagg ttgtgacttc gttggaggcg tgagcgggac
       61 gaggcttgaa tgagcgtgtc gggacgaccc gttgcgaacg tcgcgacgcc tgcaaagtta
      121 cgaaatcaaa atcaggaatg caacggtttt ttgacaaaaa atctatataa atcaatgact
      181 tatatttatt tgtatgggcg tgttaaagcg tcccgcgggc tgaacccgga ggacgctgga
      241 gcgctaaacg gaggtgatta aaagcggatg atcgagtgct taggcctggc gtttttcgat
      301 agtcgcaaag gcttcgtcga gcgtcatgac agcggcatat ttctgttgca tgtcaaagag
      361 attcgcatcg tgcggaccga tcgcccggtc gccgacgcaa tcggacacga ccagtggacg
      421 gaaaccatgc gacatcgcat ccaccacgct tgcgcgtacg catccgctcg tgactgcacc
      481 ggccacgatc aacgtctgca ccgcacgctg cgataaccac ggcgcgagtt gcgtgccgaa
      541 gaacgcggaa ggcacggtct tgcgcacgac cagttcgccc gctgcaggcg tcagctcagg
      601 cacgattgca ctgttcggat ggtcttcggt gagcgtcgcc atgccgggca ctttcagcga
      661 aaacacgttg tcgtcgctgc cgtcggccgc gtacacaatg cggctatgcg caaccggcca
      721 gccatgccgg cgcgcggcgg ccagcaggtg caccgtgcgt tcgatagccg gcgcaatgtt
      781 gccgccgccg aaggtcttgg ggtccgcgaa gccgaccacg aagtcgacaa tcagcaggcc
      841 gatattgccc ttcacaggca atggcgtgcc gaacccctgt tgtttgtaca cgcccgattc
      901 ggcgtggctc tggatgtcgc tcattcaaac tctccgggct tgtagattga tcgggttgtt
      961 ctatcggtcc attaccacgc catcgcggac cacggcaacg ccatcgagca tcacgtcgca
     1021 atggcgcagc gggatgtcga tgtgacacgt ggtcgtgcgc ttgccgcctg cttcgttgtt
     1081 gggcccaagc gaaaacagga agttgccttc gaacgcgcgt gcatccatgc cgatggttgc
     1141 ctcgcggtca tacagtccga gcgtcgacca gcgtgcgcgt ggctgcaacc cccagccgat
     1201 atgcgagatt gcataccctt caggatcgtt gaacgaggcc atgtagtcgc ttagcaaggc
     1261 cgcatccacg ccgccgtcaa tacgcgttgc gtaaccgttt tccacggtca gcgtgatcgg
     1321 atcgttcacg tatcttttct gcggcagcaa gatgtcgcca cgatcgatca cgatctggcc
     1381 gctcgcttgt ccctcgttcg ggaacgtcag cacaaaaccg cttggccagt gatcccagcg
     1441 gcccggttca tcgacgaaac cgtactcgga aatagcggga aactcgccca gcgggcacac
     1501 gagttccgtg cccgcttttg acttgacgcg catttcacgc gacgccttga tccgctcggc
     1561 ggctgcccgc acgcgggtgc gatcggcttc ggtgggcaca agccgcgcga gcacttcggg
     1621 aggttcgact gcgagcagga tcttcgtgcc ggtcgcgagg atctcgtgct gctcgggcga
     1681 gaacaacaag gtcatcaggt cgagcacgag atcgctcgcc ttcaacgcag cgatagcggc
     1741 caggttgccg gtgagaggcg tggtgccgag atacgcgagc gagtcgcggc tcagggcctt
     1801 ttctccgttc accggcaaga ggtccagccg gttgacgatc gcgcccatgg actgcgtcgc
     1861 gatcagtgcg ctcgaaagcg tttgcggatg cgtggacgcg ctggtaagga tggtgacggt
     1921 ctggccggct tgcagcttcg acaacgtcag tacctgcttc cacgcggcaa tcatttcgta
     1981 atcgctgatt ggcatgttga ctcctgaaga atgagtgtca ctgtcggctc gtcttgggtc
     2041 gtgcttggct ttagacgagc tttgcgccga ggaaatcgcc gaaggcttca tagaagccgg
     2101 cttcgttgtc ccacggaatc atgtggccgg catccggcac gcgggtatgc agtagtccgg
     2161 gcgccagcgt ctgcatttcc tgcacgtcaa cgtccagcac cacgtcgccg cgcgcggcgg
     2221 tgatcagcag tgaaggtacg cgaagcaggg gcaggtcggc gtggatgtcg tcagtatgga
     2281 aaccttcgaa tgactccaac atgccgcgtt catcgcaggt atgcagccat tgtgcgcgca
     2341 cacgcaactg gtcttcggtc caggtcgggc agaaagcgcg catgccgtct gcgtcgatgc
     2401 ctttcaaagc caggcggatc gaatcgacat accacggcag cttcgccgga taggcgcggc
     2461 ggcccggacc ggacacgggc ggatcgacca gcaccgtgcg cgtcaggcct ttcggcgcgc
     2521 tgcgtgcggc acggattgcg attcgggcgc ccatggagtg gccgacaagc gcatagtgtt
     2581 caaggccgag cgagtgagcg agcgcgatga catcggcggc ttgcgcgtcg aggctgtagt
     2641 cgagcgttga cgatgcttcg gacaaaccgc ggccgcgtac atcgagcacg taggtatcga
     2701 actggcggcc gagcgtctcg ccgacaaagc cccacgtgac cgccgggctg gtaatgcccg
     2761 gtatcacgat cacggcagga cggctagcgc gcacgccctc cgtgccgccg tagcgcaggt
     2821 aatgctggcg gatgccgttg gcgttgacgt tcgcgccgta cagaaaagtt gagttcatcg
     2881 cggggtccgt ggatggatcg aaagctatgc gtcgaaagct atgagtaacc gatcagtaag
     2941 cgccggacag cagtgcgccc gcgcccggca ccacacgttc gagatccagc tcgcgcagca
     3001 tggcgtaggt cgtggcaatg gcagcggtga tgaccggctt gcctgtcatt gcctcgactt
     3061 gcggcactgc ggcgagcgaa ggcatctgca cgcaggccga caagacgatc gcgtcgacgt
     3121 cctgataggg cagggttttc acgaagtccg gcaacagccg agggtcgtgg cggccgactt
     3181 ccaggttgtc gggaatctcg agcgcccggt aggcgacgac ttcaaaaccc tcattgcgga
     3241 tgtagtccac gaccagttcg gtcagcggtt tcatgtacgg cgcgaccacc acgatgcgtt
     3301 tggccccgat gactttcaat gcctcgacga gcgcgcccgc gcttgtaatg accggcgcgg
     3361 cgccgccgtt ctcgacggtg cgctcgtgca gccgcttttg cgacacacgg tggtaaccat
     3421 gccccatcgc catgattgcc accaggcacg cataaccgag cacgtccacg cgcgcgtcgc
     3481 taagttccag cgcgcagcgg tccgattccg cgtccatggc cgcgagctcc tccttgacca
     3541 ccttcttcat gcgcatgcgg ctggaatgga acgtaaagcg ctccggacga atgctctggc
     3601 gggcgagcag catggccggg atttcagttt ccatcgtcgt gttcgagctc ggcacgatct
     3661 ggccgatgcg aaaggtcttg gtcatctagt cgactccgta tgtcttgggc cacccgtggc
     3721 ggcttggttg gtctggcaaa agtagcggca atctggttcg ataaagtcta gtgtacacat
     3781 tgtaatttaa caagatttag aaaacatttt ttaatggtgc aagcgtgctt tagattggtg
     3841 aaaaccctta taaagtgcac atatataggg ataaaacgca ctgacatcga ctcagtgtaa
     3901 attttcttta ctcaaaaaaa ttcaatgtgt acactcgata taggttcatt taacaggctc
     3961 ggctgaacga ctttcggcga gcgccagaca tggagagatc atcatgagca aaccccgtat
     4021 tgcaatcatt ggcgcgggcc ttggcggaac agcagcagcg gcgctgatgc agcgcgccgg
     4081 gtattcggtt cgcctttacg agcaggctcc tgcgttttcg cgtctcggcg cgggcattca
     4141 cctcggcccc aacgtgatga agatcatgcg ccgcatggac tgcgaagatg cgctgaacgt
     4201 catgggttcg cacccggact actggtacag ccgcgattgg aaaacgggcg aggccatcgc
     4261 gcagatcccc cttggcgaat tcgcattgaa agaatatggc gcgtcgtatc tcacggtgca
     4321 tcgcggcgac ttccattcgc tgatgaccga ggcggtcgcg cctggcacca tcgagttcaa
     4381 taaatgcctg agcggaattg aagagctgga caacgaagtg cggctgacgt ttgccgacgg
     4441 cagcgttgag accgcggaca ttgtgattgg cgcggacggc gtgaactcga agatccgcga
     4501 ccatctgctc ggcgcggaac cgccgcgcta tacgggttat gttgcgcatc gcgcggtatt
     4561 tcccgcctcg ctgctcggca ccgatccttt cgatctgtgt gtaaagtggt ggtcggaaga
     4621 tcgccacatg atggtgtatt acgtgacgtc caagcgggat gaaatctact acgtgaccgg
     4681 cgttccgcaa gcggagtggc cggcagggca gtcggttgcg cccagcagcc gcgacgaaat
     4741 gcgcgaggtg ttcgcgggct atcatccgtc ggtgcagaag ctgatcgacg ccacgcccga
     4801 agtcacgaag tggccgctgc tggaacgcga tccgctgccg ttgtggagcc gcggccgtct
     4861 ggtgctgctc ggcgacgcat gccatccgat gaagccgcat atggcgcagg gcgcggccat
     4921 ggcgatcgag gatgcagcaa tgcttactcg ctgcctggac gaagtagggg caaccgatta
     4981 cgccggagcg tttgcgctgt atgaagcgaa tcgttcggag cgtgcatcga aggtacaact
     5041 ggtctcgcat aacaacacgt ggctgcgcac taacgaagat ccggcatggg tgttcgctta
     5101 tgacgtgttc aacgagcccc tgaagtcgcc gtcggccaag caggcaacaa ct
//
LOCUS       DATGBK010000716         2796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_8500, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000716 DATGBK010000000
VERSION     DATGBK010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8500"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(157..1833)
                     /locus_tag="VKJ77_10135"
     CDS             complement(157..1833)
                     /locus_tag="VKJ77_10135"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HMC45668.1"
                     /translation="MTSSNTHSPLDSIAALALGEDAPAAPAASASPAIPAPISSVAPV
                     AAAIAVQSGPSFESLGLSPEIIVALTASGYQVPTPVQQRAIPAALAGRDLLVSSPTGS
                     GKTAAFMLPAIERFSQLEKAKAQAPREPHDPNARPARRTQPVARPTMLVLTPTRELAM
                     QVTAAATTYGKHLRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRID
                     LSQLQILVLDEADRMLDMGFIDDIETIVAATPATRQTLLFSATIDGKISSLTGRLLKN
                     PERIEIIQKLEAQNNIAQTVHYVDDRDHKDRLLDHLLRDAGLDQAIVFTATKNDADQL
                     AIRLSDAGFESAALHGDLPQGARNRTIRALRERKVRVLVATDVAARGIDIPGITHVFN
                     YDLPKFAEDYVHRIGRTGRAGRTGTAISLVHHAEQGALKRIERFVRLPLNVSVIAGFE
                     PRRSAPAGGGGGRPGFGGRGRPGGGAGAGGAGRRFGSGGAGNGGSAKPGGWGNKPASA
                     GARDSRDGGSRDGYRSGGGSRDGGSGFGGGSRDGYAARRNDGPRAPRRGS"
     gene            complement(2321..2590)
                     /locus_tag="VKJ77_10140"
     CDS             complement(2321..2590)
                     /locus_tag="VKJ77_10140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006763999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000062 - fatty-acyl-CoA binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA-binding protein"
                     /protein_id="HMC45669.1"
                     /translation="MNELDAQFALAQADVKELSERPGNLTLLRLYALYKQASLGDVQG
                     DKPGFADIAGKYKYDAWGALAGTPQDTAKQQYIGLVESLKSGASA"
BASE COUNT          561 a          835 c          875 g          525 t
ORIGIN      
        1 gacgtgcaga cttgtgccat gcaccaacga tttcgttgca caaaagatct ttccacattg
       61 tgaaattcag ggcgtggacg aaaaaaaacc gacgcacgag gcatcggttt tcttttttgc
      121 tggcgcgcaa gaagcgcgcg ccgcacttat tacgacttag ctgccacgac gcggagcgcg
      181 cgggccatcg ttgcgacgtg ctgcataacc gtcgcgcgaa ccgccaccaa agcccgaacc
      241 accgtcacgc gatccaccgc cgctgcgata gccgtcacgc gagccaccgt cgcgtgaatc
      301 gcgagcaccc gcgcttgccg gcttgttgcc ccagccgccc ggcttggccg aaccaccgtt
      361 gccagcaccg ccgctaccga agcgacgacc tgcgccaccc gcaccagcgc caccgcccgg
      421 acggccacgg ccgccaaagc cgggacgacc accgccaccg ccggccggag ccgagcgacg
      481 cggttcgaaa ccagcaataa cgctcacatt cagcggcagg cgaacgaaac gctcgatgcg
      541 cttcagcgcg ccttgctcag cgtgatgcac caggctgatt gccgtgcccg tacgtccagc
      601 acggcccgta cggccgatac ggtgaacgta atcttccgcg aacttcggca gatcgtagtt
      661 gaacacgtgc gtgatgccgg gaatgtcgat accgcgagcg gcgacatcgg ttgcgaccag
      721 cacgcgcact ttgcgctcgc gcagtgcacg aatcgtgcgg ttacgcgcgc cttgcggcag
      781 atcgccgtgc agggcagccg attcaaaacc agcgtccgac aaacggatag ccagttggtc
      841 agcgtcgttc ttggttgccg tgaagacgat agcctgatcc aggccggcat cgcgcaacag
      901 gtggtcgagc agacgatcct tgtgatcacg gtcatcgacg taatgcacgg tttgcgcgat
      961 gttgttttgc gcttcgagct tttgaatgat ctcgatgcgt tccgggttct tcaacaggcg
     1021 gccggtcagc gagctgatct tgccgtcgat ggttgccgag aacagcagcg tctgacgcgt
     1081 ggccggcgta gcagcaacaa tagtttcgat atcgtcgatg aaacccatgt ccagcatacg
     1141 gtcggcttcg tcgagcacga ggatttgcag ttgcgacagg tcaatacggc cgcgttccag
     1201 gtggtcgagc aaacggcccg gcgtagcaac caggatttcc gggttcttcg cgagcagcat
     1261 caattgctgg ccatacgcga caccgccgag aatgctgacc gtgcgcagcc ggcgcaggtg
     1321 cttgccgtac gtggttgcgg cagcggtaac ttgcatcgcg agttcgcgag tcggcgtcag
     1381 aaccagcatg gtcggacgag cgaccggctg ggtgcggcgg gccgggcgtg cgttcgggtc
     1441 atgcggctca cgcggagctt gcgccttggc cttttcgagt tgcgagaaac gttcgatagc
     1501 cggcagcatg aatgctgcgg tcttgcccga accggtcggg ctggaaacca gcaagtcacg
     1561 gccggcgagc gctgcgggaa tcgcgcgctg ctgaaccggc gtcggcactt gatagccgga
     1621 ggccgtcagc gcaacaatga tctcaggcga caaaccgagc gactcgaagc tcgggccgct
     1681 ctgcacagcg atagcagcgg cgacgggcgc aactgaagaa ataggggcgg gaatagcggg
     1741 tgaagcagat gctgccggcg cggcgggtgc gtcttcaccg agtgccagtg cagcgatgga
     1801 gtccagcggg ctatgggtgt tgctcgaagt catgtctttc cttgaaacgg ggaataaggc
     1861 gtgtggcgcc aatcggcata cccaagtcgt cagattcagc gagcaaagaa gcagcgagca
     1921 aatcgaaaaa cgggggcagc tcgcaacaat aaaggcgagc ttttcgttag aagctgtatc
     1981 ggattcgaca ggccgaggcg gctttgtcgt cagcctgatg catgatcggc cgaagagaag
     2041 gcctagcagg gaggggacag tttctaaact ggattggagc aaaacgctac gaggcgccgc
     2101 gctgcgtgcg atgaatcgac taaaaccatc aattcacccg gtcacagtga agcgcaggca
     2161 agagtatagc ggcaattgtt gcgctgcgcc agattttaag acagtttgat tcatcttgtt
     2221 gttggctggg gcggggagtt tcgcctgcat cttgaaaagg cgccgcagga tgctcaacct
     2281 gctcaaccaa cggcctggtc gacgcctacc tgcccgaaat ttacgccgag gcgccgcttt
     2341 tcagcgattc caccagcccg atatattgct gctttgcggt gtcctgcggc gtacccgcga
     2401 gtgcgcccca cgcatcgtat ttgtatttgc cggcgatatc ggcgaaaccc ggcttgtcgc
     2461 cttgcacatc gcccaggctc gcttgcttgt agagcgcgta gaggcgcagc agcgtcaggt
     2521 ttcccggacg ttcggataat tccttgacgt ccgcctgggc aagcgcaaat tgcgcgtcga
     2581 gttcgttgat tccgctcatt cggttctccg gacatgctgg ttaaggaccg ttgatcatag
     2641 caagccggtt gcgcgcgctt gtcgagggtt tcttccagaa ttcccgagcg agggcgcacg
     2701 gcctgatcgg gcgcgagcgg gcgttgtccg cccggcgcgt cgccacctca cgcctcacgg
     2761 ctcacgcgtt acgtcacgca ttacaatagc ggccat
//
LOCUS       DATGBK010000717         2407 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147349, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000717 DATGBK010000000
VERSION     DATGBK010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147349"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..874)
                     /locus_tag="VKJ77_10145"
     CDS             complement(<1..874)
                     /locus_tag="VKJ77_10145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HMC45670.1"
                     /translation="MNRYALYLIAAMLLVGSNVGVGKSVVAFIPVPLFALLRFVIAMA
                     VLWPLLRPAKIRLVRRAEWANLFLQAFFGTFMFTLLMLNGVQRTSAVAAGVITSTIPA
                     VVALFSWFFLKERPNGRALISIALAIAGVVVINIAQGTASASQDSSLLGNLMVLGAVC
                     CESFYVILSRRLTQTLPAIEICAYTHFFGFLLMLPLGFSALVSFDYSSVSLSVWSLVL
                     WYGLSASIFCFWLWMKGIRHVDGSLAGVFSGLLPIAAALYGIVFLGERPTVAHGVALA
                     CVVTGIVLASMKAKT"
     gene            1258..>2407
                     /locus_tag="VKJ77_10150"
     CDS             1258..>2407
                     /locus_tag="VKJ77_10150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC45671.1"
                     /translation="MSAIESVLQERRIFPPSAKAMAGAAISGMDAYKALASEAERDYE
                     GFWARLARETLSWHKPFTTVLDESNPPFYKWFEDGEINASYNCIDRHVEAGHGAKNAI
                     IFEADDGTVVNVTYQDLLQRVCRFANALKKRGVKKGDRVVIYMPMSVEGVVAMQACAR
                     IGATHSVVFGGFSSKSLNERLVDVGAVALITSDEQMRGGKALPLKSIADEAIAAGGCE
                     AVTSVIVYKRTGGKTQWHEGRDLWMHELVEHESDQCEPEWVSAEHPLFILYTSGSTGK
                     PKGVQHSTGGFLLWAAQTMKWTFDAKPDDVFWCTADIGWITGHSYITYGPLTLGGTQV
                     VFEGVPTYPNAGRFWDMIAKHKVSLFYTAPTAIRSLIKSAEADQKVHPK"
BASE COUNT          540 a          703 c          752 g          412 t
ORIGIN      
        1 ccgttttcgc cttcatgctg gccaggacga tcccggtgac cacgcacgcc agtgcgacgc
       61 catgcgcgac agtcggacgt tcaccgagaa acacaatgcc gtagagcgct gccgcgatcg
      121 gcaagagccc ggaaaatacg ccagcgagac tgccgtcgac gtgccggatg cctttcatcc
      181 aaagccagaa acaaaagatg ctcgccgaaa ggccatacca gagcacgagg ctccagacgc
      241 tcaggctgac gctgctgtaa tcgaagctca cgagcgctga aaaacccagc ggcagcatca
      301 gcaagaagcc gaagaaatgg gtataggcgc agatttcgat ggcgggaagc gtctgcgtca
      361 ggcgccgtga aaggatcacg tagaacgatt cgcaacatac cgcaccgagc accatcagat
      421 tgccgagcag cgaactatcc tgcgacgcgc tggccgttcc ctgcgcaatg ttgatcacga
      481 ccactccggc aatggcgagc gcgatggaaa ttaacgcacg cccgttcggg cgttccttca
      541 ggaaaaacca cgagaacaac gcgaccaccg ccggaatcgt gctggtgatc acgcccgccg
      601 cgacggcgct cgtgcgctgc acgccgttga gcatcagcag cgtgaacatg aaggtgccga
      661 aaaacgcttg caggaacaag ttggcccact cggcgcgcct gaccagccgg atcttcgccg
      721 gacgcagcaa cggccagagc accgccattg caatgacgaa gcgcagcaat gcgaacagcg
      781 ggacggggat gaaagcaacc accgacttgc cgacgccgac attgctgccg actagcagca
      841 tggctgcgat gaggtagagc gcgtaacgat tcaagctgga atccggacga cgagttcagt
      901 taacatggcg atgcgcgtca gggatcgcgc gcgaccgaag cagcgcggga tcgcaaagcg
      961 catcattgta ttgatgcgtt gaaagggggc attgtaaaag tgccggtccc tacgtgtata
     1021 ccccgtggtt atcgggcaga ttgcgtaagt agcgggtaag gcgcgcggct tatcttcgcc
     1081 gtataaagtc tggcgcgcgt atgccgcgct gcatcgcaca ggcaacgcac agaggcagga
     1141 gacacggcac gacgcttgag gctcgcgtgt gccacccacg ccgaaaagac atggcggctt
     1201 cggagttgag ctccggtgtc gcggttatca gatttaccat caaagaaggg gttgtcgatg
     1261 tctgcgattg aatccgtact ccaggaacgc cgtatttttc cgccttcggc caaagcaatg
     1321 gccggcgcag cgatctctgg catggacgcg tacaaggctt tggcgtccga agccgaacgc
     1381 gattatgaag gcttctgggc gcggctcgcg cgcgagacgc ttagctggca caagccgttc
     1441 acgaccgtcc tcgacgaatc gaatccgccg ttctacaagt ggttcgaaga cggcgaaatc
     1501 aatgcgtcgt ataactgcat cgaccgtcat gtcgaagccg gccacggcgc gaagaatgcg
     1561 atcatctttg aagctgatga cggcaccgtt gtgaacgtca cgtatcagga tcttctgcag
     1621 cgcgtctgcc gcttcgccaa tgcgcttaag aagcgcggcg tgaagaaggg cgatcgcgtg
     1681 gtgatctaca tgccgatgtc ggtggaaggc gtcgtcgcca tgcaagcctg cgcgcggatt
     1741 ggcgcgacgc actcggtcgt gttcggcggg ttctcgtcga agtcgctcaa cgaacggctg
     1801 gtggacgtgg gcgcggtcgc tctcatcacg tcagacgaac aaatgcgcgg cggcaaggcg
     1861 ctgccgttga agagcattgc cgatgaagcc atcgccgccg gcggctgcga agcggtcacg
     1921 agcgtgattg tgtacaagcg cacgggcggc aagacgcaat ggcatgaagg ccgcgatctc
     1981 tggatgcacg agctggtcga gcatgaatcc gatcagtgcg agccggaatg ggtcagcgcc
     2041 gaacatccgc tgttcattct gtacacgtcg ggttccacag gcaaaccgaa gggtgtgcag
     2101 cacagcaccg gcggcttttt gctgtgggcc gcgcagacca tgaagtggac cttcgacgcc
     2161 aagcctgacg acgtgttctg gtgtaccgcc gacatcggct ggatcacggg ccatagctat
     2221 atcacgtacg gtccgttgac gctcggcggc acccaggtcg tgttcgaagg cgtgccgacc
     2281 tatccgaacg ccggccgctt ctgggacatg atcgcgaagc acaaggtgtc gctgttctac
     2341 acggcgccca cggcgatccg ctcgctgatc aagtccgccg aggccgacca gaaagtgcat
     2401 ccgaaga
//
LOCUS       DATGBK010000718         4180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_170958, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000718 DATGBK010000000
VERSION     DATGBK010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4180
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170958"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..580
                     /locus_tag="VKJ77_10155"
     CDS             <1..580
                     /locus_tag="VKJ77_10155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007880494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HMC45672.1"
                     /translation="IVNGATGYFGSAAVLAALAMGASRVVALGRRAQPLQPLVQIGRG
                     RVVPIVLSGDAAHDVTAIRAAAGGGANLAFDMVGNATDANATLATLRSLRRGGRLVLM
                     GSMLVDLPIPYSEMLLNNWELIGNFMYTPSDYLALVALAASRQLPLASVELKTFSFAA
                     LEAAIDEAGRMSGLQCTVVCGDSPQAWQQGGA"
     gene            complement(577..1182)
                     /locus_tag="VKJ77_10160"
     CDS             complement(577..1182)
                     /locus_tag="VKJ77_10160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HMC45673.1"
                     /translation="MLTSVEQLEDIYGKANERSVRKEISFISEDYAAFILASPFVMLA
                     SAGEDGLDCSPKGDAMGFVRILDTHTLAIPDRPGNNRIDTLRNLVHDPRVALLFLVPG
                     VGEMMRVNGRASIADDSELLASFSVNGKPPRTVILVHVESVYFHCSKAVVRSDLWNGE
                     KHVDRSSLPSAGAMLQNVSDASFDGNAYDRALPGRLKTDLY"
     gene            complement(1235..2035)
                     /locus_tag="VKJ77_10165"
     CDS             complement(1235..2035)
                     /locus_tag="VKJ77_10165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC45674.1"
                     /translation="MKSFLLKLSAFAFIGGVAAATTAATATTVNAAELHVMSSGGFTA
                     AYKILGPKFAAASGNTLDTVLGPSMGKAPEAIPNRLARGEPADVVIMVGYALDDLIKQ
                     GKVIPGSRVELADSAIGMVVRSGAPKPDISTVAALKETLLHAKSVAYSDSASGVYIQN
                     ELFKRLGIDEQIRPKATMVPKIPVASVVANGDYELGFQQVSELLPVPGVTFVGKIPES
                     VQSITRFAAGIPVGAQHPAEAKALLEYLASPEAAPVVTQTGLDPVTPH"
     gene            2714..3133
                     /locus_tag="VKJ77_10170"
     CDS             2714..3133
                     /locus_tag="VKJ77_10170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006764543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45675.1"
                     /translation="MLNKSSGGPLAWKSKIRPEQSADSLRYVTLDLASDSHARAAIEA
                     YSDSCAAELPWLADILRARLEKLNRSVDRVQDRFPGLQAGLQEDEAAPMPLTYCEQTV
                     RRLIAFACMCARAREDYSDAAWDHVMKSFDRMLIQMR"
     gene            3243..3941
                     /locus_tag="VKJ77_10175"
     CDS             3243..3941
                     /locus_tag="VKJ77_10175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC45676.1"
                     /translation="MRICVLDDDLSQTAFVAQTLTAAGHFCQVFTEGKSLIHELRQQP
                     YDLLLLDWNMPEMPGDVVLKWVRQNLTTNLPVLFLTSRSVESDIVQMLNAGADDYILK
                     PVSRPVLLARVEALLRRIYMHQNEVTEESYGIYRFDLTTQTALVSEAPAALTQKEFEL
                     ALLLFRNLSRPLSRTHIRESVWRQDVDIPSRTIDTHVSQIRSKLVLRPQNGYRITPIY
                     SYGYRLEKVGNESP"
     gene            3980..>4180
                     /locus_tag="VKJ77_10180"
     CDS             3980..>4180
                     /locus_tag="VKJ77_10180"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HMC45677.1"
                     /translation="MAVAVAGVIVIVCSIQPVFAKPMPTQDMTPYVVRADDSLYTLAD
                     RYMQSPSDWRQLRDINHVANPRH"
BASE COUNT          861 a         1194 c         1259 g          866 t
ORIGIN      
        1 gatcgtgaac ggtgcgaccg gctacttcgg ctcggccgcg gtactcgccg cactggcgat
       61 gggcgcgagc agggtggttg cgctcggcag gcgtgcgcaa ccgctgcaac cgctggtgca
      121 aatcgggcga ggccgcgtgg tgccgatcgt gctctcgggc gacgcggcgc acgatgtaac
      181 ggccattcgt gcggcggcgg gtggtggcgc caacctggct ttcgatatgg tcggcaacgc
      241 aaccgatgcc aacgccaccc tcgccacgct cagaagcctg cgccgcggcg ggcgcctcgt
      301 gctgatgggc agcatgctgg tggacttgcc gattccctat tccgagatgc tgctgaacaa
      361 ctgggagttg atcggcaact tcatgtacac gccctccgat tatcttgcgc tggttgcgct
      421 ggccgcatcg cgtcagttgc cgctcgcgtc cgtcgaactg aagacatttt cgttcgcggc
      481 gctggaagcg gctattgatg aagccggccg catgtcggga ctgcaatgca cggtggtctg
      541 cggtgactcg ccgcaagctt ggcagcaggg aggcgcctag tacaggtcgg tcttgaggcg
      601 tccgggcagt gcgcgatcgt aggcgttgcc gtcgaaactg gcatcgctta cgttctgcag
      661 catggcaccg gccgagggca agctcgagcg gtcgacgtgt ttctcgccgt tccacaagtc
      721 cgatctcacg accgccttcg aacaatggaa atacacggac tccacatgca caaggatcac
      781 cgtacgcggc ggtttgccgt tgacgctgaa cgaggcgagt agctcgctgt cgtcggcaat
      841 cgatgcacgg ccgttcacgc gcatcatttc tcccacgccc ggcacgagaa acagcaaggc
      901 cacgcgcggg tcgtgcacga ggttcctgag tgtatcgata cggttattgc ccgggcggtc
      961 gggaatggcc agcgtatggg tatcgaggat ccggacgaag cccattgcat cgcccttggg
     1021 cgagcagtcg agcccgtcct ctcccgccga cgccagcatc acgaacggcg acgcaaggat
     1081 gaaagccgca tagtcctcgc taatgaacga aatctctttg cgcaccgaac gctcgttcgc
     1141 cttgccgtag atatcttcca gttgctcgac gctagtcaac atgcttcgct ccttcaatga
     1201 ccggggtttc agcctataca ttagcaggcc cggctcagtg cggcgtgaca ggatcgagtc
     1261 ccgtctgcgt gacgacgggc gccgcttccg gcgaggcgag atactcgagc agcgccttcg
     1321 cttcggccgg atgttgcgcg cccactggaa tgccggccgc aaatcgcgtg atcgattgca
     1381 ctgactcggg gatcttgccg acgaacgtta cacccggcac gggcaggagt tcactcactt
     1441 gctggaagcc gagttcgtag tcgccgttgg ccaccaccga cgccaccgga atcttcggca
     1501 ccattgttgc cttcggccgg atctgctcat ctatgccaag gcgcttgaac aactcgttct
     1561 gtatgtacac gccgctcgcg ctgtcggaat aggcgaccga cttcgcgtgc agcagcgttt
     1621 ccttcaacgc tgcaaccgtg ctgatgtccg gcttcggcgc accggagcgc acgaccatgc
     1681 cgatggccga atcggcgagt tccacgcgtg agcccggaat caccttgcct tgtttgatga
     1741 ggtcgtcgag cgcgtagccg accatgatca ccacgtccgc cggttcgccc cgcgccagcc
     1801 ggttcgggat cgcttcgggc gctttgccca tcgacgggcc aaggacggtg tcgagggtat
     1861 tgccgcttgc cgcagcgaat tttggcccga ggattttata ggctgcggtg aatccacctg
     1921 agctcatgac atgcaattcg gcggcattaa ccgtggtcgc ggtagccgcg gtagtcgcgg
     1981 ctgccacgcc gccgatgaac gcgaatgcgg aaagcttcag caagaacgat ttcatggatg
     2041 accgtaaaaa gtggatgagt cgataacgtt tgcgccgacg aagtttaaac gcatcgacgg
     2101 tgatcgtcgt tagggaacac cccgtgttaa tcggcgcaga aagacgcgca atcggtttcc
     2161 gacttagcct gacgattaac ttaccgcgga agcaaacgtt gtaccttcaa cgccgctgga
     2221 cctgcatgcc gggacttact ggttgaactg tcaaatactg aaaagtgcgt caaatagcgc
     2281 agtgattggc gttagagtgc ttcatcgaaa gacatttttg gtttgtcctt cgataaataa
     2341 tatcagtggg aaaaaacatg cccggcacct agtgccaagg gatgagaacc catgaaggcg
     2401 aaccggttta tttagcgctg agaggctggt tcgccgcgca caagacgtca gtttttgggg
     2461 atatcaagtg aataccaaaa cgccacaccc aggaaatcgc gcgtcgataa taatcgacgc
     2521 ggaaatagtg catatcgaag ccatcatgtc tcgttgtctc gcgatgggcg ccaatggtgc
     2581 gatttttcac gcgaaatatt ggcgcaaccg tttattgtcg ctgcgggatt ccggtctgag
     2641 ccctacgcag gacgttgcgg tgcgatcgct tctaagcgat ctcgtggagt gtcactagac
     2701 cagggtgcct tgaatgttga ataaatccag cggcggcccg cttgcgtgga agtcgaaaat
     2761 ccggccggaa caatcggccg acagcttgcg ttatgtgacg ctggatctag cgtcggattc
     2821 gcatgcgcgt gcggcaatcg aggcttattc tgattcatgc gctgccgagt taccgtggtt
     2881 ggcggatatt ctgcgcgcac gactggagaa attaaaccgt tcggtagacc gcgttcaaga
     2941 tcggtttcca ggacttcaag caggacttca ggaggatgaa gccgctccaa tgccgctgac
     3001 ttattgtgaa cagacggtgc ggcgtctgat tgcttttgcg tgcatgtgcg cgcgggcacg
     3061 tgaggattac tcggatgcgg cgtgggatca cgtcatgaaa agctttgacc ggatgctgat
     3121 tcaaatgcgg tgatttcgca taaaaagtat aataaaaata caaaataatc tgccactggc
     3181 attcggcacc caagcaaaat aaatgacaag gccgtcttga ctatttaacg ggatatcagg
     3241 caatgcggat ttgcgtgctg gacgacgacc tgagccagac ggcgttcgtg gctcagacac
     3301 tgactgccgc cgggcacttc tgccaggtct ttaccgaggg caagagcctg atccatgagc
     3361 tgaggcagca gccgtacgat ctgctgctgc tcgactggaa catgccggaa atgccgggcg
     3421 acgtcgtgct gaaatgggtc aggcaaaacc tcaccacgaa cctgccggtc ctcttcctga
     3481 cgagccgcag tgttgaaagc gacatcgtcc agatgcttaa cgccggggcc gatgactaca
     3541 tcctcaagcc ggtgtcgcgg cctgtgctgc tcgcccgggt ggaagcgttg ctgcggcgga
     3601 tctacatgca ccagaacgag gtgaccgagg aaagctacgg catctatcga ttcgatctga
     3661 ccacccagac cgcactggtc agcgaagccc cggctgcgct gacgcagaag gaattcgagc
     3721 tcgcgctgct gctctttcgc aatctgtcga ggccgctgtc acgcacccat atccgcgaat
     3781 cggtgtggcg gcaggacgtg gatatcccgt cacgcacaat cgatacccat gtgtcgcaga
     3841 ttcgctccaa gctggtgttg cggccgcaaa acggttaccg cataacaccc atctatagct
     3901 acggctaccg gctggaaaaa gtggggaatg aatcgccgtg aacgggttcc ataaaaaagc
     3961 gtgtggtttg gactcttcaa tggcggtggc agtggccggc gtcatcgtga ttgtctgctc
     4021 gatccagccg gtcttcgcca aacccatgcc gacgcaggac atgacgccct atgtggtgcg
     4081 cgcggacgat tcgctctaca cgctcgcgga ccgctatatg cagagtccat ccgactggcg
     4141 gcagttgcgc gacattaatc acgttgcgaa tccgcggcac
//
LOCUS       DATGBK010000719         3588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_124556, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000719 DATGBK010000000
VERSION     DATGBK010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3588
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124556"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..999)
                     /gene="betC"
                     /locus_tag="VKJ77_10185"
     CDS             complement(<1..999)
                     /gene="betC"
                     /locus_tag="VKJ77_10185"
                     /EC_number="3.1.6.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="choline-sulfatase"
                     /protein_id="HMC45678.1"
                     /translation="MLKRKPNILILMADQMTPFALSAYGHHVTKTPNMDALAARGVVF
                     DSAYCASPLCAPSRFSFLSGKLPSAIGAYDNAAEFPSQTLTFAHYLRAEGYRTILSGK
                     MHFCGPDQLHGFEERLTTDIYPADFGWTPNWDDFETRPSWYHNMSSVIDAGPCVRTNQ
                     LDFDDEVTYTTRQKLFDIARERQAGKDERPFCVVASLTHPHDPYAIPQKYWDMYRDED
                     IQMPAYRDTLDDADPHSKRLRYVCETDKTPPTDQQIRNARHAYYGAISYVDAQFGAIL
                     EALDQAGLADDTIVIVTSDHGEMLGERGLWYKMTFFEGGCRVPLIVHAPGQFKAAHV"
     gene            1143..2063
                     /locus_tag="VKJ77_10190"
     CDS             1143..2063
                     /locus_tag="VKJ77_10190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45679.1"
                     /translation="MSRQDRLPPMQALSMFESAARLASFTAAARELGSTQPAVSQRVV
                     QLEENLGAALFERGHRGVTLTEDGVRLFEAVRQSLDTIRVATSDIRARHAAPAQRSLK
                     LLTDFGFATYWLMPRLSQFKALMPNVDVRITTAQDVIAADHDHADIVIGFGDAETDWA
                     GRGAVKLFPEQVTPVCSPAFFARHGKPGHPSDLVNLPLLHLEPTNPERWLSWHGWFAA
                     HGLAAPPAHRGITFNSYGFVAHAAIMGQGVALGWAPLVDELVASGQLVELFDTPVTTD
                     AGYLLNAPRAHSTTVSAFRDWLLFECGVMA"
     gene            2202..3098
                     /gene="purU"
                     /locus_tag="VKJ77_10195"
     CDS             2202..3098
                     /gene="purU"
                     /locus_tag="VKJ77_10195"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HMC45680.1"
                     /translation="MAGSNVTNNVIDTLSHQLVLTVACPSAAGQVAAVVGFLDRHQCY
                     VDELTVFDDDLSQRFFVRCVFHGVDHDETLQITALQQEFTPIAERFSMTWAIHKVAAR
                     PKVLIMVSKLEHCLADLLFRWRMGELKMDIVGIGSNHRDLEPLAVQHGLPFHHLPVTA
                     DTKPQQEARLLDLFESSGAELMILARYMQILSGETSRKLAARAINIHHSFLPGFKGAK
                     PYHQAHTRGVKLIGATAHFVTDDLDEGPIIEQVVERVDHSYKPERLLATGRDVECITL
                     ARAVKAFIERRVFINGDRTVVL"
     gene            complement(3195..>3588)
                     /locus_tag="VKJ77_10200"
     CDS             complement(3195..>3588)
                     /locus_tag="VKJ77_10200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC45681.1"
                     /translation="TSEAIKAYGLDYTLMPSSGSAMTAELARSENAKKPIIVTGWKPH
                     WMFAKYKLKFLEDPKKVFGEAEHVDSVVNPGLEKKAPTVVAFLKKFQWKPGEIDSVML
                     ATTNGAKPAAAADAWISAHGDRVSNWTN"
BASE COUNT          677 a         1101 c         1060 g          750 t
ORIGIN      
        1 cacatgtgcc gccttgaatt gtcccggcgc gtgcacgatc agcggcacgc ggcagccgcc
       61 ttcgaaaaac gtcatcttgt accagaggcc acgttcgccc agcatctcgc catgatcgga
      121 cgtcacgatc acgatggtgt cgtcggcgag tcccgcctga tcgagcgctt cgaggatcgc
      181 gccgaactgc gcgtcgacgt acgaaatcgc gccgtaatac gcatggcgtg cgttgcggat
      241 ctgctggtcg gtcggcggcg tcttgtccgt ctcgcacacg taacgcaggc gcttggaatg
      301 cgggtcggcg tcgtccagtg tgtcgcggta cgcaggcatt tgaatgtctt cgtcgcggta
      361 catgtcccag tatttctgcg gaatcgcgta aggatcgtgc gggtgcgtga gcgacgccac
      421 cacgcaaaac ggccgctcgt ctttcccggc ttgccgctcg cgcgctatgt cgaataattt
      481 ctgacgcgtg gtgtaggtca cctcatcgtc gaaatcgagc tgattcgtgc gcacacatgg
      541 ccccgcgtcg atcacggaac tcatgttgtg ataccagctc gggcgcgtct cgaagtcgtc
      601 ccagttcggc gtccagccga aatccgccgg atagatgtcg gtggtcaggc gctcctcgaa
      661 accgtgcaac tgatccggac cgcaaaagtg catcttcccc gagagaatcg tccggtaccc
      721 ctccgcgcgc aggtaatgcg cgaacgttaa tgtttgcgag ggaaattcgg cggcgttatc
      781 gtaggcacct atcgccgagg gcaacttgcc cgacaagaac gaaaaccgcg acggcgcgca
      841 gagcggactc gcgcaatacg ctgaatcgaa gaccacgccc cgggccgcga gcgcgtccat
      901 gttcggcgtc ttcgtcacgt gatggccata cgcggacaac gcgaacggcg tcatttgatc
      961 agccatcaga ataaggatat ttggtttgcg tttaagcatt ggggtgaggc tcgaatagaa
     1021 tcaggaaggt gacgcagcat ggccggtacc gcacggcgaa cggtccgtgt cgcgcatcac
     1081 tattgccgtt cattgcgcgg ctgtgaagag agcaaaacgt tatgagctca taagggggac
     1141 ttatgtcgag acaggatcgt ttgccgccga tgcaggcgct gtcgatgttc gagtccgccg
     1201 cgcgtctcgc cagcttcacc gccgccgccc gcgaactggg ctccacgcag ccggcggtca
     1261 gccagcgcgt ggtgcaactc gaggaaaacc tcggcgcggc gctgttcgag cgcgggcaca
     1321 ggggtgtaac gcttaccgag gacggcgtgc gcctgttcga agccgtacgt cagagcctcg
     1381 acaccatccg cgttgctacg agtgacattc gggcgcggca cgcggcgccc gcgcagcgat
     1441 cgctcaagct cctcaccgac ttcggcttcg cgacgtattg gctgatgccg cgcctgtcgc
     1501 aattcaaggc gctgatgccc aatgtcgatg tcaggatcac cactgcgcaa gacgtaatcg
     1561 ccgccgatca cgaccatgcg gatatcgtga tcggttttgg tgacgcggaa acggactggg
     1621 cgggacgcgg tgccgtcaaa ctgtttcctg aacaggtcac gccggtgtgc agtcccgcgt
     1681 tcttcgcgcg acatggcaag cccggccatc cttcagacct cgtcaacctg ccgctgcttc
     1741 atcttgaacc cacgaacccg gagcgctggc tgtcgtggca tggctggttc gcggcgcacg
     1801 gactggcggc gccacccgcg catcgcggca ttacgttcaa cagctatggc ttcgtcgccc
     1861 atgcggcaat catgggccag ggcgtggcgc tcgggtgggc gccgctggtg gatgaactcg
     1921 tggcaagcgg ccaactggtc gagttgttcg acacaccggt caccaccgac gcgggatatc
     1981 ttctgaatgc gccgcgcgct cactccacga ccgtatctgc gtttcgcgac tggctgctgt
     2041 ttgagtgcgg cgtgatggcc tgaagccgcg caaaacccgc ctgacgctcc gataccagcg
     2101 tcacggcgtt taacttctag ccgccgcccc atgcaatttg ttctactgca acgtatgcgc
     2161 gctgcgttcg cggcgctgcc attcgcatag tggagaaccg catggccggc agcaacgtca
     2221 ctaataacgt aattgacacc ctttctcatc aactcgtgct gacggtggcc tgtcccagcg
     2281 ctgcgggaca ggttgccgcc gtggtcggct tcctcgaccg gcaccagtgt tacgtcgatg
     2341 aactcaccgt cttcgacgac gacctcagcc agcgcttctt cgtacgctgc gtcttccacg
     2401 gcgtagatca cgatgaaacg ctgcagatca ccgcgttgca gcaggaattc acgcctattg
     2461 ccgagcgttt ctccatgacg tgggcgatcc acaaggtagc cgcgcggccg aaggtgctca
     2521 tcatggtgtc gaagctcgag cactgtctcg cggacctgtt gttccgctgg cgcatgggcg
     2581 agttgaagat ggacattgtc gggatcgggt cgaaccatcg tgatcttgaa ccacttgccg
     2641 tgcagcatgg cctgcccttc catcacctcc ctgtcaccgc cgataccaaa ccgcaacagg
     2701 aagcgcgtct gctcgatttg ttcgagtcgt ccggagcgga gttgatgatc ctcgcgcgct
     2761 atatgcagat cctgtcgggc gagacgagcc ggaaactggc tgcacgcgcg atcaacatcc
     2821 atcattcttt cctgcccggt tttaaaggtg cgaagcccta tcaccaagca catacgcgtg
     2881 gtgtgaagct gatcggcgca acggctcact tcgttaccga tgacctcgac gaaggtccga
     2941 tcatcgagca agtggttgag cgcgtggatc actcgtacaa accggagcgc ttgctggcaa
     3001 cggggcgcga cgtggaatgc atcacgcttg ctcgtgcggt gaaggcgttc attgagcgac
     3061 gggtgtttat caacggcgac cggacggtgg tgctgtaatc agcctttgaa caaaggcgcc
     3121 gaaaacgaca aaacgccgct aaaaagcggc gttttgtcgt tttgtcgttt tgttgaagct
     3181 aaagcttggg acctttaatt ggtccagttc gacacacggt cgccgtgagc gctgatccac
     3241 gcatcggcag cggcggccgg cttggcgccg ttcgtcgttg ccagcatcac gctgtcgatc
     3301 tcgcccggtt tccattggaa cttcttcagg aaagcgacca cagtaggcgc cttcttctca
     3361 agtcccggat tcaccacgct gtccacatgc tcggcttcac caaacacctt cttcggatct
     3421 tcgaggaatt tcagcttgta cttcgcgaac atccagtgtg gtttccaacc cgtcacaatg
     3481 atcggcttct tcgcgttttc cgaacgcgcc agttccgctg tcatcgcact gcccgaactc
     3541 ggcatcaacg tgtaatccag accatatgcc ttgatcgctt cgctcgtc
//
LOCUS       DATGBK010000720         2077 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_263552, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000720 DATGBK010000000
VERSION     DATGBK010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263552"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1524)
                     /locus_tag="VKJ77_10205"
     CDS             complement(<1..1524)
                     /locus_tag="VKJ77_10205"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HMC45682.1"
                     /translation="MTTTNPLLADSSLPRFSMIEPAHVLPAVDATLADYRARIDALLA
                     DTTTRTFANTMLPQETLESRLEQIWSPVSHLHAVKDSDALRAVFSEAEQRLSDHAAEL
                     GQNRELYAAVEAVADNVEFSTLPRAAQTLVEHSLRDFRLSGVALEEPARTRYRDIANA
                     LTRLATEFEEAVLDASESWSEPLDEASLTGLPQAERALLQRYAQDAGRDGWLITLKQP
                     SVQAILTYADNRGLRERVYTAYQTRASDQGPTAGRFDNSARIEQILALRHEAAQLLGF
                     ANAAEESLATKMASSPVRVLDFLHDLVRRAKPVAQRELAELREFAAAELGLSNLQPWD
                     ITYAAEKLRLNKFDLSEEELKPYFPLPAVLDGLFAITERVFGVRLRLQNDVDVWHSDV
                     RYYDVLDADGRVRAGAFVDLYARAGKRGGAWMDVCRSRFRDGIQTHPPIAYLTCNFAP
                     PLDAQPALLTHDDVLTLFHEFGHGLHHLLTEVDFPGVSGISGVEWDAVELPSQFMENF
                     "
     gene            1645..>2077
                     /locus_tag="VKJ77_10210"
     CDS             1645..>2077
                     /locus_tag="VKJ77_10210"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HMC45683.1"
                     /translation="MSETSTGDEPFDVRSLLRDLELFRHLDDATLTELAGELEWFAMP
                     GGATLFDYGDVSDALYVLKSGSLGAFKPDMDGAFHLDGVVAAGETVGELGLIVDQPRS
                     ASVRALRDSELLKLSRHGFENLIARYPEAMLVSARLAVKRLI"
BASE COUNT          382 a          604 c          690 g          401 t
ORIGIN      
        1 gaagttttcc atgaactggc tgggcagctc cactgcatcc cattccacgc cgctgatgcc
       61 ggagactccg gggaaatcga cctcggtgag cagatggtgc aggccgtgac cgaattcgtg
      121 gaacagggtg agcacgtcgt cgtgcgtcag caacgccggt tgagcgtcga gcggcggcgc
      181 gaaattgcag gtgagatacg cgatgggcgg gtgtgtttga ataccgtcgc gaaagcgcga
      241 acggcataca tccatccatg cgccgccgcg cttgccggcg cgggcgtaca aatccacaaa
      301 ggcaccagcg cgaacgcgcc cgtcggcatc cagaacatcg tagtaacgca cgtcggaatg
      361 ccacacatcg acgtcatttt gcagtcgcag gcgcaccccg aacacccgct cggtgatggc
      421 gaacaggccg tcgagaaccg ctggcagcgg aaagtacggc ttcaattcct cttcgctcaa
      481 gtcgaatttg ttcaggcgca gtttctccgc cgcgtaggtg atatcccagg gttgcaggtt
      541 gctcagaccg agttccgccg cggcgaattc gcgcagttct gccaactcgc gttgcgcaac
      601 cggtttggcg cggcgcacca gatcgtgcag aaaatccagc acgcgcacag gagagctggc
      661 catcttggtc gccagcgatt cctcggccgc gttggcaaag ccgagcagct gcgcagcctc
      721 gtgacgcagc gccaggatct gttcaatgcg cgcggagttg tcaaagcgtc cggctgtcgg
      781 tccctgatcc gatgcgcgtg tctggtacgc cgtgtacacg cgttcacgca ggccgcgatt
      841 gtcggcatag gtgagaatgg cctgcacgct cggctgtttg agcgtgatca gccaaccatc
      901 gcgtcctgcg tcctgcgcat agcgctgcag cagtgcacgt tcggcctgcg gcagtccggt
      961 cagcgatgct tcgtccagcg gctcggacca cgattcgctc gcgtcgagaa cggcctcctc
     1021 gaattcggtg gccaggcgcg tcagcgcatt tgcgatatcg cgatatcgcg tgcgcgccgg
     1081 ctcttcgagc gccacgccgg acaggcggaa gtcgcgcagg gaatgttcaa ccagcgtttg
     1141 ggcagcgcgc ggcaaagtgg aaaattccac attgtctgcg actgcttcca cggcggcata
     1201 cagttcgcga ttctggccga gttcggcggc gtggtcgctg aggcgttgct cggcctcgga
     1261 gaaaactgcg cgcagggcat cggaatcctt caccgcatgc agatgcgaca cgggtgacca
     1321 gatctgttcc aggcgacttt ccagcgtctc ctgtggcagc atcgtgtttg cgaacgtgcg
     1381 cgtcgtggta tcggcaagca atgcatcgat gcgcgcgcgg tagtcggcga gagtcgcgtc
     1441 gaccgcgggc agcacatgtg cgggttcaat cattgagaag cgcggaagcg agctgtcggc
     1501 gagtagggga ttggtggtgg tcattgcggg acactatggg aacggaaccg caaacgtggt
     1561 gcactgctgc gggaaaatca agcggtagca tgtaatcgag gcggtttgcg ttagcatgcg
     1621 catagcgcag cagggaggtt tgtggtgagc gagacgtcga ccggcgacga acccttcgat
     1681 gtgcgcagct tgctgcgcga tcttgagctg ttccgtcatc tggatgacgc caccctgacc
     1741 gaactggccg gcgagctgga atggttcgcg atgcctggcg gcgcgactct gttcgactat
     1801 ggcgatgtct ccgacgccct gtatgttctc aaatccggca gccttggcgc gttcaagccg
     1861 gatatggacg gcgcgtttca tctggatggc gtcgtggcag ccggcgaaac ggtaggcgag
     1921 ctgggtctga tcgtcgatca gccacgttcg gcgagcgtgc gcgcgctgcg cgattcggag
     1981 ctgctgaaac tgtcgcggca cggtttcgag aacctgattg cacgttatcc ggaggccatg
     2041 ctggtcagcg cccggctcgc ggtgaagcga ctgatca
//
LOCUS       DATGBK010000721         1736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_78111, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000721 DATGBK010000000
VERSION     DATGBK010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78111"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VKJ77_10215"
     CDS             complement(<1..180)
                     /locus_tag="VKJ77_10215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14-type cytosolic carboxypeptidase"
                     /protein_id="HMC45684.1"
                     /translation="MSISITSQFDAGAIDVVSSDDPAAIRLRVRPDSHADFAQWFYFR
                     VSGVRDEPLTMTFENA"
     gene            complement(225..1004)
                     /gene="yaaA"
                     /locus_tag="VKJ77_10220"
     CDS             complement(225..1004)
                     /gene="yaaA"
                     /locus_tag="VKJ77_10220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014723345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HMC45685.1"
                     /translation="MIIVLSPAKSLDYETPPHVTKHTLPEFAADSAELIDALRKLSPQ
                     DIGSLMHISDPLARLNFQRYADWSPTFGTHNSKQAMLAFNGDVYEGFDAKSLHAADLD
                     YAQTHVRVLSGLYGLLRPLDLLQPYRLEMGTRFANARGKDLYAFWGDRITVALNAQMK
                     KQKGARVLVNCASNEYFKSVKPKRLDAPVISPVFQDWKNGQYKIISFHAKRARGLMAR
                     FAVQHRIDEPEGLKAFESEGYAFDKKASTETSYVYRRRLGL"
     gene            1060..1575
                     /locus_tag="VKJ77_10225"
     CDS             1060..1575
                     /locus_tag="VKJ77_10225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HMC45686.1"
                     /translation="MKKSPVLRAVLDSNVWIDILVFDDPITRPIGAALEAGTLEALID
                     ARCLKELTYVLDYPQFVRFALNKAEALETVARLSQLVAPEPPPADAPPLPKCRDRDDQ
                     KFLELAHASKADWLVSKDRALLKLAKRTARDFGFRIAQPAPFVASFSAHIEAYEETNK
                     ETNRDANAIDV"
BASE COUNT          368 a          528 c          491 g          349 t
ORIGIN      
        1 ggcgttctcg aatgtcatcg tgagcggctc gtcgcgcacg cccgagacgc ggaagtagaa
       61 ccactgcgcg aagtcggcgt ggctgtccgg acgcacacgc aggcgaatgg ccgcgggatc
      121 gtcggaagac acgacgtcta tcgcgcctgc atcgaattga ctcgtgatcg aaatgctcat
      181 gacgcttcct taataatgct tgctctagtg cgtgctcgct gcgctcaaag gcccagccgc
      241 cggcgataca cataactcgt ttcagtcgat gcctttttat cgaaggcata accttcgctc
      301 tcgaaagcct tcaggccttc cggctcgtca attcgatgct gcaccgcaaa tcgcgccatc
      361 aggccgcgtg cgcgtttagc gtgaaaactg atgatcttgt actggccatt cttccagtcc
      421 tgaaagaccg gcgatatcac cggcgcgtcc aggcgcttcg gcttcaccga cttgaaatac
      481 tcgttggacg cgcagttcac cagcacgcgt gcgcccttct gttttttcat ctgcgcgttc
      541 agggccaccg tgatgcgatc gccccaaaac gcatacaaat ccttgccgcg agcgttggcg
      601 aacctggtgc ccatttccag ccgatacggt tgcaacagat ccagcggccg cagcagcccg
      661 tacaacccgg acagcacacg cacatgagtt tgcgcgtagt cgagatcggc tgcatgaagc
      721 gacttcgcgt caaaaccctc gtacacgtcc ccgttgaacg ccagcatggc ctgcttcgaa
      781 ttatgcgtgc caaaggtcgg cgaccagtcc gcgtaacgct ggaaattgag gcgcgcgagc
      841 ggatcggaga tgtgcatgag actgccgatg tcctgtggcg agagcttgcg caaagcgtcg
      901 atcagttcgg cggaatcggc ggcgaattca ggcagcgtgt gcttggtaac gtgaggcggg
      961 gtctcgtagt cgagcgattt ggccggcgat agaacgatta tcataggggc tcgccggcat
     1021 gctgccaacg atgaagacgg aaaccctcga ttgtatcgaa tgaaaaaatc ccccgtactg
     1081 cgcgccgtgc tggattcgaa tgtctggatc gacatcctgg tattcgacga ccccatcacg
     1141 cgcccgattg gcgccgcgct tgaagccggt acgctggaag cgctgatcga tgcgcgctgc
     1201 ctcaaagaac tgacgtatgt gctggactat ccgcaattcg tgcgctttgc cttgaataaa
     1261 gccgaagcgc ttgaaactgt cgcgcggctc tcgcagctcg tggcgcccga accgccgccc
     1321 gccgacgcac cgccgttgcc caaatgccgc gatcgcgacg accagaagtt tcttgaattg
     1381 gcgcacgcga gcaaggcgga ctggctggta tcgaaggatc gggcgttgct taagctcgcg
     1441 aaacgcacgg cacgcgactt cgggtttcga attgcccagc ccgcgccgtt cgtggccagt
     1501 ttctcggcgc acattgaagc ttatgaagaa acgaacaaag aaacgaatag agatgcaaac
     1561 gccatcgacg tttaaaatag gacacatttc cctttagcgc agccgaaacg cccacaccat
     1621 gaacgcctcg cacgaccttt cgttttcgcc cgccgttccc gccatcactt cgcgcctgcc
     1681 gaacgttggc acgaccatct tcacggtcat gagcgcgctc gcgacgcaga aaggtg
//
LOCUS       DATGBK010000722         1743 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_332730, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000722 DATGBK010000000
VERSION     DATGBK010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332730"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..1431)
                     /locus_tag="VKJ77_10230"
     CDS             complement(28..1431)
                     /locus_tag="VKJ77_10230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC45687.1"
                     /translation="MPHVLIVDDDPSTREALAAIIGEDGLTTATAGDLREARIQLVRQ
                     TPDVVFTDLKLPDGLGVDLFEDLDPRSGVEIIVITGHATVESAVSALKMGATDYLVKP
                     INMQRVKAILSRLPRPGDLKAEIGTLRGELRRMGRFGLMLGNSPAMQTVYDQIGRVAP
                     TAASVLLIGESGTGKEVAAQTLHELSLRRKHSFIAVNCGAISPNLIESEMFGHERGSF
                     TGADRQHKGYFERANGGTLFLDEITEMPIELQVKLLRVLETGMFMRVGTTKELETDVR
                     LIAATNRDPEQAVLEGKLRLDLYHRLNVFPINLPPLRDRGTDVELLGQAFLDELNSRY
                     NTKKTFPATVRDMLASYPWPGNVRELKNYVQRAYIMSGAESDSTATVPLQISLAKPSA
                     GTAVTIPFGTSLAEADRQLILATLEQCGGVKTRAAEILGISLKTLYNRLVEYGDDAAN
                     KAALSEASEVGDADAGR"
     gene            1506..>1743
                     /locus_tag="VKJ77_10235"
     CDS             1506..>1743
                     /locus_tag="VKJ77_10235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45688.1"
                     /translation="MKAARRQAECALRETQVRRKMKVLPVSRMAPDCVAQLLPYSELI
                     TVDESIIRLYQDETHAWACVSNSPLGRSVLVFRSR"
BASE COUNT          338 a          529 c          520 g          356 t
ORIGIN      
        1 gatacgcccg gcgatcaacg ctgaacctca gcggccggcg tcagcatcac ctacttcgct
       61 ggcttcgctt agcgccgctt tgttcgcagc gtcatcgcca tattcaacca gccggttgta
      121 gagcgttttc aggctgatgc caagaatctc tgccgcacgt gtcttcacac cgccgcattg
      181 ctcgagcgtg gcgaggatca actggcgatc cgcttcggca agcgaggtgc cgaaaggaat
      241 cgtgactgcc gttcccgccg atggcttcgc caacgagatc tgcagcggca cggtcgcggt
      301 actgtccgac tcggcgcccg acatgatgta cgcgcgctgc acgtagttct tcagctcgcg
      361 cacattaccc ggccacggat acgacgcgag catgtcgcgc acggtagccg gaaacgtctt
      421 cttggtgttg tagcgtgaat tgagctcgtc gaggaacgcc tggccgagca actccacgtc
      481 cgtgccgcga tcgcgcaagg gcggcaggtt gatcgggaag acgttgagcc ggtggtacaa
      541 gtcaagccgc aacttgccct cgagcacagc ctgctccgga tcacgattgg tcgcagcaat
      601 caggcgtacg tcggtctcga gttctttcgt tgtacccacc cgcatgaaca tgccggtctc
      661 gagcacgcgc aggagtttca cctgcaattc gatcggcatc tcggtgattt catcgaggaa
      721 cagcgtgccg ccgttcgcgc gttcgaagta acccttgtgc tgacgatccg caccggtgaa
      781 cgagccacgc tcatgcccga acatctcgga ctcgatcagg ttcggcgaaa tcgctccgca
      841 gttcaccgca ataaacgaat gcttgcgccg caggctcaac tcgtgaagcg tctgcgcggc
      901 gacttccttg ccggtacccg attcaccgat cagcaatact gacgccgcag tgggcgccac
      961 ccggccgatc tggtcgtaga ccgtttgcat cgcgggcgaa ttgccgagca tcaggccaaa
     1021 gcggcccatg cggcgcagtt cgccacgcaa tgtgccgatc tcggccttga ggtcgccagg
     1081 acgcggcagg cggctcagga tcgccttgac gcgctgcatg ttgattggtt tgacgaggta
     1141 gtccgtcgcg cccatcttga gcgcgctgac cgccgactcc accgtcgcgt gtccggtgat
     1201 gacaatgatc tccacgccgg atcggggatc caggtcctcg aacagatcga cacccagacc
     1261 atcgggcagc ttgaggtcag tgaatacgac gtccggtgtc tggcgcacaa gctgaatccg
     1321 cgcttcgcgc agatcgcccg cagtcgctgt tgtcagtccg tcttcgccga tgatcgcggc
     1381 tagtgcctcg cgggtactgg gatcgtcatc gacaatcaat acgtgtggca tgcgtctcga
     1441 atttatccaa agcgttgagg gtcacacggc gcagaaggcg tcgtggaggt ctctgggacg
     1501 gtgctatgaa agcagcacgc cgccaggccg aatgcgcact gagagaaact caagtacgcc
     1561 gaaagatgaa agtcttgccg gtttcgcgaa tggcgcctga ctgcgtcgcg caattattgc
     1621 catatagcga acttattact gtggatgagt cgattataag gctttatcaa gatgaaacgc
     1681 acgcctgggc gtgcgtttcg aatagtccgc ttggacgcag cgtcctggtg ttccgatcgc
     1741 gtg
//
LOCUS       DATGBK010000723         2420 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286633, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000723 DATGBK010000000
VERSION     DATGBK010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286633"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1550
                     /locus_tag="VKJ77_10240"
     CDS             <1..1550
                     /locus_tag="VKJ77_10240"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC45689.1"
                     /translation="TADNLSFTLRAATAQPLSPAPNDDRFGGNAWTHWPFNIYAHSYR
                     NFVDWWQTALSSVPGVASENERTLDFVARNALEALSPANYLATNPELLDTTRAEAGEN
                     LVRGFGLWLEDIERTLGGKAASGTEKFIVGRDVAVTPGKVVMRNDLIELIQYSPATET
                     VFAEPILIIPAWIMKYYILDLSASNSLVKYLVSLGHTVFIGSWKNPTAREREFGMDDY
                     LRLGIRASVDAVANIVPDQKIHSVGYCIGGTLLSIAAATFSAEGDQRLASVTLLAAQQ
                     DFSEPGELSVLISPSQLDMLEAVMSQTGVLKSEQMTAAFSLLRSRELLWTPAVNTYVR
                     GKRQSQNDLMAWNADGTRMPCRMHAQYLRELYLNNALARGEFLAESRRVDLAAISLPM
                     FIVGTETDHVAPWQSVFKARGLTRSPDYTFLLTSGGHNAGIVSGPVHPRRRHRVRTWF
                     NATETLLPEAWFETTQPRSGSWWPTWQQWLAQHSARSLVAPPPMGSAATGYPPLADAP
                     GNYVLQK"
     gene            1611..>2420
                     /locus_tag="VKJ77_10245"
     CDS             1611..>2420
                     /locus_tag="VKJ77_10245"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018058224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HMC45690.1"
                     /translation="MNEVVITAALRSAVGKFNGSIAKVPASALGAHIIKALLARSGVL
                     PNQISEVIMGQALTAGVGQNPARQALIHAGLPDTVPGMTIGKVCGSGLKATHLAAQAI
                     KCGDADIVIAGGQENMSASPHVLQGSRDGFRMGDAKLLDSMINDGLWDAYNNYHMGTT
                     AENIAKKYDISRREQDEFAAASQQKAEAAQKAGRFKAEIAPIEIASRKTTMVFESDEF
                     IRAGTTAEALGELKPAFSKDGTVTAGNASGINDGAAAVMMMSARKANELGMK"
BASE COUNT          520 a          705 c          707 g          488 t
ORIGIN      
        1 aaacggccga taacttgagc tttaccctac gcgctgcgac cgcccaacca ctgtcgcccg
       61 cgccaaacga tgatcgcttt ggcggcaacg cctggacgca ttggcccttc aatatctacg
      121 cgcatagcta tcgcaatttc gttgattggt ggcagacggc tctttcgagc gtgccgggcg
      181 tcgcatccga aaatgaacgc accttggatt tcgtggcccg caatgcgcta gaggccctgt
      241 cgccagccaa ctaccttgcg accaatcccg aattgctgga caccacccgt gctgaagctg
      301 gcgagaactt ggtgcgcggc ttcggtttat ggctcgagga cattgagcgc actctcggcg
      361 gcaaggcggc gagcggtacc gaaaaattta tcgtcggtcg cgatgtcgcc gtaactccgg
      421 gcaaagtcgt gatgcgcaac gaccttatcg aattgattca gtattcgccg gcgactgaaa
      481 cggtttttgc cgaaccgatc ctgatcattc cggcttggat catgaagtac tatatcctcg
      541 acctgtcagc gagcaattcc ttggtgaaat acctggtctc gctcggtcac accgtgttta
      601 tcgggtcgtg gaaaaatccg accgcgcgcg agcgcgagtt cggtatggac gactatttaa
      661 gactgggaat tcgggcctcg gttgatgctg ttgcgaacat cgtgccggac caaaagattc
      721 attcggtggg ttactgtatc ggcggcacgc tgctgtcgat cgccgcggca accttctccg
      781 ctgaaggtga tcaacgtttg gcgagcgtga cgctgctcgc cgcgcagcaa gactttagcg
      841 agcccggaga gctgtcagtt ttgatcagcc cgagccagct cgatatgctg gaagcggtca
      901 tgagccaaac cggtgttctc aaaagtgagc aaatgacggc cgcgttctca ctgctacgct
      961 cccgtgagct gctgtggact ccggccgtca atacttacgt gcgcggcaaa cgccaatcgc
     1021 agaatgattt gatggcctgg aacgccgacg gtacgcgcat gccatgccgc atgcacgcgc
     1081 aatacttacg cgagctctat ctgaacaacg cgctcgcgcg cggcgaattt ctggctgaga
     1141 gccgccgtgt cgatctcgca gcgattagcc tacccatgtt catcgtcggt acggaaaccg
     1201 atcacgtcgc gccatggcaa tcagtcttca aagcgcgcgg cttgacacgt tcgcctgact
     1261 atacgttctt gctgacatcg ggtggccaca atgccggtat cgtcagtggt cctgttcatc
     1321 cgaggcggcg ccaccgcgtt cggacttggt tcaatgcaac cgagacgctc ttgccggaag
     1381 cgtggtttga gacgacccag cctcgatccg gttcgtggtg gccgacatgg cagcaatggc
     1441 tggcacagca ttccgctcgc tccttagtcg ctccgccgcc aatgggatct gccgcaaccg
     1501 gctacccgcc gctcgccgat gcgcctggaa attacgtgct gcaaaagtag ttcatcgccg
     1561 caaggcgcca gcggcagatc gaattgagtt tttcggtaca ggagaaatgc gtgaacgaag
     1621 tagttatcac agcagcgctg cgctccgcag tcggtaagtt caacggatcc atcgccaaag
     1681 tgcccgcgtc cgctttaggt gcccacatca taaaagcact gctggcgcgc tccggggttc
     1741 taccgaatca aatttccgag gtaatcatgg ggcaggcgct taccgccggc gtcggccaaa
     1801 acccggcgag gcaagccctg attcatgccg ggctcccgga caccgtaccg ggaatgacaa
     1861 ttggcaaggt ttgcgggagc ggcctgaagg ctacgcatct ggccgcacag gcgattaagt
     1921 gcggcgatgc ggatatcgtc attgccggcg gtcaggagaa catgagtgcg tcgcctcatg
     1981 tcctacaagg atctcgcgac ggatttcgca tgggcgatgc caagctgctc gacagcatga
     2041 tcaacgacgg cctctgggac gcatataaca actatcacat ggggacgacg gctgaaaaca
     2101 tcgcgaagaa gtacgatata tcgcgtcgcg aacaagacga atttgcggcc gcttcgcagc
     2161 agaaggccga ggccgcgcag aaagccggtc gattcaaggc tgagattgca ccgatcgaga
     2221 tcgcctcgcg caaaaccaca atggtgttcg aaagtgacga attcatccgc gccggtacga
     2281 ccgccgaagc actcggtgag ctcaagccag cgttcagcaa ggacggcact gttacggcgg
     2341 gtaacgcttc gggcatcaac gatggcgccg ccgcggtgat gatgatgtcg gctcgcaaag
     2401 ccaacgagct cggcatgaag
//
LOCUS       DATGBK010000724         1688 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_32448, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000724 DATGBK010000000
VERSION     DATGBK010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32448"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..162
                     /locus_tag="VKJ77_10250"
     CDS             <1..162
                     /locus_tag="VKJ77_10250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018912006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HMC45691.1"
                     /translation="RPRGRPKLENPKLPIKLRIDPDVVDAYKAQGEGWQTRMNAALRD
                     YAKSHGLMR"
     gene            complement(215..1432)
                     /locus_tag="VKJ77_10255"
     CDS             complement(215..1432)
                     /locus_tag="VKJ77_10255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HMC45692.1"
                     /translation="MTPTERALDFDLRKLNAAFYADPYPVYDALRTWEPIKTMPDGSL
                     FLTRYRDVQAVYRDPKTFSSDKTVEFGPKYGVDTPLFAHHTTSLVFNDPPRHTRVRKL
                     IAGALTARAIAAMEPGLVRLIDGLLEQAVARGEIDLIDDFASAIPVEVIGNLLDVPHD
                     ERAPLRDWSLAILGALEPALNPEQEARGNRAVADFIDYLVTLVARRRVHPGDPQHDVL
                     TRLIQSEADGERLDEAELLHNCIFILNAGHETTTNLIGNGIVLLAQWPEQRARLLADP
                     ALIESAIEECLRYESSNQLGNRITTTDTHIAGMPVALGTPVTLCIGAANRDPEQFEAA
                     DQFDITRDPNRHLAFGFGIHQCAGLSLARLEARIAIGRFIARFPDYGLAGEPVRASRA
                     RFRGFVKAPVRVG"
     gene            1562..>1688
                     /locus_tag="VKJ77_10260"
     CDS             1562..>1688
                     /locus_tag="VKJ77_10260"
                     /inference="COORDINATES: protein motif:HMM:NF024680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4072 domain-containing protein"
                     /protein_id="HMC45693.1"
                     /translation="MNLVIQSLDPIAESHLKPLTALARSQHTERADAGRMLRLSGA"
BASE COUNT          345 a          556 c          468 g          319 t
ORIGIN      
        1 cgcccgcgcg gacgaccgaa gctggaaaat ccgaagttac ccatcaaatt gcgcatcgac
       61 ccggacgtgg tcgacgctta taaagcgcaa ggcgaaggct ggcaaacgcg aatgaatgcc
      121 gcgttgcgcg actacgcgaa atcgcacgga ttgatgcgtt gaaatagggt gactaaaggc
      181 gaggcgcgct gttaagggcg tcctcacgcc accttcaacc caccctcacc ggtgccttca
      241 caaatccccg aaaccgcgct ctggacgcac gcaccggctc tcccgcaagt ccgtaatccg
      301 ggaaccgtgc aataaaccgc ccgatcgcaa tacgcgcctc cagtcgcgcc agcgacaacc
      361 ccgcgcactg atgaatcccg aacccaaaag caagatgccg gttcgggtcg cgagtgatat
      421 cgaattgatc cgcagcctca aactgctccg ggtcgcgatt cgccgcccca atgcataacg
      481 tcaccggcgt cccaagcgcc accggcatcc cggcaatatg tgtatccgtc gtcgtgatcc
      541 ggttgccaag ctggttcgaa ctttcgtagc gcaaacactc ctcgatcgca ctctcgatca
      601 acgctggatc ggccaataac cgcgcccgtt gctccggcca ttgcgccagc agcacgatgc
      661 cgttgccgat cagattggta gtcgtctcgt gccctgcgtt caggataaaa atgcagttgt
      721 gcagcaattc ggcttcgtcc aggcgctctc cgtcggcctc actctgaatc agccgcgtca
      781 gcacgtcatg ctgcggatcg ccgggatgca cccggcgccg cgcaaccagc gtcaccagat
      841 aatcgatgaa atcggctacc gcccgattac cccgtgcttc ctgttccggg ttgagcgcag
      901 gttccagtgc gccgagaatc gctagcgacc agtcgcgcaa tggcgcgcgt tcatcgtgcg
      961 gcacgtcgag caaattgccg atcacttcaa ctggaatcgc cgaagcgaaa tcatcgatca
     1021 aatcgatctc accgcgtgct acagcctgct cgagaagacc gtcgatcagg cgcacaagac
     1081 ccggctccat tgccgcgatc gcgcgggccg tcagcgcccc cgcgatcagt ttgcgcaccc
     1141 gcgtgtgacg cggcggatcg ttaaatacga ggcttgtcgt gtgatgcgcg aacaacggag
     1201 tgtcgacgcc atacttcggg ccaaattcaa cggtcttgtc cgaactgaag gttttcggat
     1261 cgcgatacac ggcctggacg tcccgatacc gcgtaagaaa cagcgagcca tcgggcattg
     1321 ttttgatcgg ctcccaggtc cgcagcgcgt cgtagaccgg atacgggtcg gcgtaaaacg
     1381 cggcgttgag cttgcgcaga tcaaagtcga gcgcgcgttc ggtcggggtc atgcctgtct
     1441 ccgtcgtttt atcgacagcc atcatagcgg cgcggcgcgc acgtccgcca tcggtcggga
     1501 ccattacaat gacgggtctt acactgcttt cttccgccat ttttctcgct ttccgcccgt
     1561 catgaacctt gtcatccaaa gcctcgatcc gatcgccgag tcccatctga aaccgctcac
     1621 cgccctcgcc cgctcgcagc atacggagcg cgcggacgct ggccggatgt tgcggctgag
     1681 cggcgctg
//
LOCUS       DATGBK010000725         1530 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_217182, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000725 DATGBK010000000
VERSION     DATGBK010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217182"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..260
                     /locus_tag="VKJ77_10265"
     CDS             <1..260
                     /locus_tag="VKJ77_10265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HMC45694.1"
                     /translation="ATIEANVAKISNSMLGSVQRILVEGPSRKDPSELAGRTENNRVV
                     NFPAPISSHKRLIGQMVDVEINVAYPHSLRGELILTPATTH"
     gene            305..1414
                     /locus_tag="VKJ77_10270"
     CDS             305..1414
                     /locus_tag="VKJ77_10270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HMC45695.1"
                     /translation="MKTAQQHLEFTAPHDDNARLANLCGPLDENLRQIEQALDVTLTR
                     RGHKITIRGRGAKVALAALENFYNRAKDTLSVDDIQLALVEARNAARRALNVNKPSNN
                     LNSDPVDPRFRGDPDHPFDEPSATIDLGEEEDPGPKLYTRRADLRGRTPMQREYLKQI
                     IAHDVTFGIGPAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQ
                     KVDPYLRPLYDALYDLLGFDKTAKMFERQMIEIAPLAYMRGRTLNHAFIILDEAQNTT
                     PEQMKMFLTRIGFGSKAVVTGDTTQVDLPRGHRSGLIEAQHILADVRGIAMTKFTSVD
                     VVRHPLVARIVEAYDAQSERDSAAAAIAAAKYRSE"
     gene            1411..>1530
                     /locus_tag="VKJ77_10275"
     CDS             1411..>1530
                     /locus_tag="VKJ77_10275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation factor"
                     /protein_id="HMC45696.1"
                     /translation="MSMPKLALSLQFPAAKTFPEHKALLPRATVAGWIKASLFA"
BASE COUNT          316 a          469 c          474 g          271 t
ORIGIN      
        1 aggcgaccat cgaggcgaac gtggcgaaga tcagcaactc catgctgggc tcggtgcaac
       61 gcattctggt ggaaggcccg tcgcgcaagg acccgagtga actggccgga cgcacggaga
      121 ataatcgcgt ggtgaatttc ccggcgccga tctcgtcgca caagcggctg atcggccaga
      181 tggtcgatgt tgaaatcaac gtggcatatc ctcactcgtt gcgcggcgaa ctgattctga
      241 cgccggccac gactcactaa gttggcccct taactgcagc ttcgacagga acccgactct
      301 cgccttgaag accgctcagc agcatctgga attcaccgca ccgcacgacg acaacgcgcg
      361 gctcgccaac ctgtgtggcc cgctcgacga aaacttgcgg cagatcgagc aggcgctcga
      421 cgtgacgctg acgcgtcgcg gacacaagat caccatccgc gggcgcggcg cgaaggttgc
      481 gctggcggcg ctcgagaatt tctacaatcg cgcgaaggac acgttgtcgg tggacgatat
      541 ccagttggca ctcgttgaag cgcgcaacgc agcgcggcgc gcgttgaacg tcaacaaacc
      601 atcgaataac ctgaattccg atcctgtcga tccgcgtttc cgcggtgacc ccgatcatcc
      661 gttcgatgaa cccagcgcca ccatcgatct gggcgaagaa gaggatcccg gtccgaagct
      721 gtacacgcga cgcgccgatc tgcgcggccg cacgcccatg cagcgcgaat acctgaagca
      781 gatcattgcg cacgatgtga cgttcggcat cggcccggcg ggtacgggca agacctatct
      841 ggcggtggcg tgcgcggtcg atgcgctcga acgcgatcag gtgaagcgca ttgtgctgac
      901 ccgtcccgcc gtggaagcgg gcgaacggct gggtttcctg ccgggcgacc tcgcgcaaaa
      961 agtggatccg tatttgcggc cgttgtacga cgcactctat gacctgctcg gcttcgataa
     1021 aaccgcgaaa atgttcgagc gtcagatgat cgaaatcgcg ccgctcgcgt acatgcgcgg
     1081 ccggacgctg aatcacgcgt tcatcattct ggacgaggcg cagaacacca cgcccgagca
     1141 gatgaagatg ttcctgacgc ggattggttt cgggtcgaag gccgttgtca ccggcgacac
     1201 cacccaggtc gatttgccgc gtgggcacag aagtgggctg attgaagcgc aacacatcct
     1261 ggctgatgtc cgcggtatcg cgatgacgaa gttcaccagc gtggacgtgg tgcggcatcc
     1321 gctggtcgcg cgcattgtgg aagcgtacga cgcgcagtcg gagcgggaca gcgctgccgc
     1381 ggcgattgcc gccgcaaagt atcgctctga ataagcatgc ccaaacttgc cttgtcgctg
     1441 caatttcccg ccgccaaaac gtttcctgaa cacaaggcgc tgttaccgcg cgcgaccgta
     1501 gccggctgga tcaaggcgtc actgttcgcg
//
LOCUS       DATGBK010000726         1657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286726, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000726 DATGBK010000000
VERSION     DATGBK010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286726"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1016
                     /locus_tag="VKJ77_10280"
     CDS             <1..1016
                     /locus_tag="VKJ77_10280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HMC45697.1"
                     /translation="LIAGWRQSTPPDAPNEFLIDVQPDQRAGVTDYLSQHGQADAVLS
                     PMVRGRLIAVNGKPVSPDNYEKADAKRLVDREFNLSYTTELPSDNRVVGGDWYGTDAK
                     AQVSIEEGLAKIIHVKLGDTLRFDVAGMQVEGPVTSLRKVDWNSFKVNFFVLMPPPSI
                     SDLPATFITSFHLPPGQQGLIDGLINKYPSVTAIDIAPILAQIQRVLEQVIGAVQFLF
                     VFTLAAGVLVLYAALAGTRDERVHESALLRALGASHKQVRSVQTAEFVAVGALSGLMA
                     ALGAQGIGWVLATYVFEFHIDFNPWLVPAGIVAGVVCSGVGGWMSLRRVLSRPALQSL
                     RDA"
     gene            1132..1542
                     /locus_tag="VKJ77_10285"
     CDS             1132..1542
                     /locus_tag="VKJ77_10285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017331548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II truncated hemoglobin"
                     /protein_id="HMC45698.1"
                     /translation="MTEANIEQAPQPTAFELVGGEERVRALVDRFYDLMDLEPDFAAL
                     RALHPPTLENSRDKFFWFLCGWMGGPDHYISRFGHPRLRARHMNFAIASPERDQWLRC
                     MAWAMEDIGLDAPLRERLLTSFFDTADWMRNRPG"
BASE COUNT          307 a          498 c          519 g          333 t
ORIGIN      
        1 acttgatcgc gggctggcgg caatctacac cgccggatgc accgaacgaa tttctcatcg
       61 atgtccagcc tgaccagcgc gccggcgtta ccgattacct ctctcaacat ggccaggccg
      121 acgcggtgtt gtcgccaatg gtgcgcggtc ggctgatcgc tgtgaacggc aagccggtca
      181 gtcccgacaa ctacgaaaag gccgacgcaa agcgcttggt ggaccgcgag ttcaaccttt
      241 catacacaac cgaattaccc agcgataatc gcgtagtcgg cggcgactgg tacggcacgg
      301 acgcaaaggc gcaggtatcg atagaagaag gactcgcgaa gatcatccac gtgaagctcg
      361 gcgacacgct gcgcttcgac gtagccggca tgcaggtcga agggccggtc acgagcctgc
      421 gcaaggtcga ctggaactca ttcaaggtga acttcttcgt gctgatgccg ccgccgtcca
      481 tcagcgattt gcccgcaacc tttatcacga gtttccattt gccaccgggg cagcagggtt
      541 tgatcgacgg cttgatcaac aaatacccga gcgtgaccgc cattgatatc gcgccgatcc
      601 tcgcgcagat ccagcgcgtg ctggagcagg tgattggcgc tgtccagttc ctgtttgtct
      661 tcacgctcgc ggcgggcgtg ctcgtgttgt acgcggcgct ggccggcacg cgcgacgagc
      721 gcgtgcacga gtccgcgttg ctgcgcgcgc tcggggcgtc gcataagcag gtgcgctcgg
      781 tgcagactgc ggaattcgtc gcagtgggcg cattgagcgg gctgatggcg gcgctcggcg
      841 cgcagggaat tggctgggtg ctggcgacgt acgtgttcga gtttcacatc gatttcaacc
      901 cgtggctcgt gccggcgggc atcgtggcag gtgtcgtgtg ttcgggcgtg ggcggctgga
      961 tgagtctgcg ccgcgtgctg tcgcggccgg cgctgcaatc gttgcgagat gcttgatcgc
     1021 gactcggata caacgcatgg ccgggcacga cccgctacac acaggacgaa ccccgcagct
     1081 tgccgcagcg ctcattgtcc cgcgttgtcc ccataacccc aaagaaaacg catgacagaa
     1141 gcaaatattg aacaagcgcc gcaacccacg gcatttgaac tcgttggcgg cgaggagcgc
     1201 gtgcgtgcac tcgtcgaccg gttctacgac ctgatggatc tcgaaccgga cttcgcggct
     1261 ttacgcgcat tgcatccccc gacgctcgag aattcccgcg ataaattctt ctggttcctg
     1321 tgcggctgga tgggcggccc ggaccattac atcagccgct ttgggcatcc gcgtttgcgt
     1381 gctcgccata tgaacttcgc gattgcatcg ccggaacggg atcaatggtt gcgctgcatg
     1441 gcgtgggcaa tggaagacat tggcctcgac gcgcccttgc gcgagcgtct cctcacgtcc
     1501 ttcttcgata ccgccgactg gatgcgaaac cgcccgggct aaggaggctt ggcggcgcat
     1561 cggcataatg gtgtttcatt ttcagtcggc gacagatcag gagacttccc catgagcaca
     1621 cgcgcgttgt ttcgcgaaga cgcctatttg acgcgtt
//
LOCUS       DATGBK010000727         3932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147440, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000727 DATGBK010000000
VERSION     DATGBK010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147440"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..2339
                     /locus_tag="VKJ77_10290"
     CDS             72..2339
                     /locus_tag="VKJ77_10290"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HMC45699.1"
                     /translation="MSVFVRVALDHPLPTLFDYRYDLAPTPLPGMLVRIPFGRRDAVG
                     LICEVTDHTEVPSDKLRDVAAICSTLAPLADEWRALTLFAAEYYQRGLGEVALPALPQ
                     VLRDASRWAKLLAPEERYRLMAEGRASLPDALPPRATALRRLADALAANPTLPAAEAR
                     ALHPKARATLDEWQTRGWVSLETGDAPEQDTPLAPAVEKAALHAADALLPQLTAEQSD
                     AVDAITGAKGFAAFLLHGVTGSGKTEVYLHALADLLGSRPDAQALVLVPEINLTPQFE
                     AAFRTRFAALPEGAIVTMHSGLAEGERARNWLAAHTGRARLVLGTRLAILASLPKLSL
                     IVVDEEHDPAYKQQEGLRYSARDLAVYRANKLEIPVVLGSATPSLESWWQAEQGRYTK
                     LTLTRRAVATAVLPSVRLIDLEEERQRGRASVEGLSGPLIAAMKMRLERGEQSLVFLN
                     RRGYAPILSCDACGWVAGCPRCSAYVVLHKPERALRCHHCGWESRIPKSCPDCGNVDI
                     APMGRGTQRVEETLATAVPGARVLRIDADSTRRKGSAQALFSDVHAGEVDILVGTQMI
                     AKGHDFQRVTLVGVLNADTALFSHDFRASERLFAQLMQVSGRAGRAGLPGEVMIQTRY
                     ARHALYHALARHDYVGFANSTLAERRDAHLPPFVYQAMLRAEGRTLETALDFLGAAAA
                     EFAALAGAERVTVYDAVPLTIVKVFNVHRAQLLLECASRAVLQNALRAWQPALRSLKI
                     KGVIRWNVEVDPLDI"
     gene            complement(2397..2582)
                     /locus_tag="VKJ77_10295"
     CDS             complement(2397..2582)
                     /locus_tag="VKJ77_10295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45700.1"
                     /translation="MSTWMIVCSIWAMCTLCVVLFIRGAHPHVERPEGGTRDDGGDMK
                     VGGLTVARVQGADRGNS"
     gene            2900..>3932
                     /locus_tag="VKJ77_10300"
     CDS             2900..>3932
                     /locus_tag="VKJ77_10300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015600251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HMC45701.1"
                     /translation="MASTTLGVKVDDLLRTRLRDAATRLERTPHWLIKQAIFAYLERI
                     EHGQLPPELSGAMGSADTLEPSALADSEEDGAPHPFLDFAQNVQPQSVLRAAITAAYR
                     RPEPECVPFLIGQARLSTGVAAETNAMATKLVEALRKKQTGGGVEGLIHEFSLSSQEG
                     VALMCLAEALLRIPDRATRDALIRDKISKGDWRSHMGQAPSLFVNAATWGLMITGKLV
                     TTNSEAGLSSALTRLIGRGGEPLIRKGVDMAMRLMGEQFVTGETISEALANSRKFEAR
                     GFRYSYDMLGEAATTEEDAVRYYASYEQAIHAIGKAAGSRGIYEGPGISIKLSALHPR
                     YSRSQQERTM"
BASE COUNT          715 a         1217 c         1268 g          732 t
ORIGIN      
        1 ctctgcggtc aattgcggca aaagcgcgtc ggcggcgtgc agcgcggcct tttcaacggc
       61 gggtgcggca attgagcgtc tttgtccgcg tcgcgctgga ccatcccttg ccgacgcttt
      121 tcgactatcg atacgatctg gccccaacgc cgctacccgg catgctggta cggattccct
      181 tcggacgtcg cgatgcggtc ggcctgattt gcgaagtcac ggatcacaca gaagtgccat
      241 cggacaagct gcgtgatgtg gctgcgattt gcagcacact cgcaccgctt gccgacgaat
      301 ggcgcgcgct gacgttgttc gcggccgagt attaccagcg cggtctgggc gaagtggcgc
      361 tgcctgcgct gccgcaagtt ctgcgcgacg cctcgcgctg ggcgaaattg ctcgcgccgg
      421 aggagcggta tcggttgatg gcggaagggc gcgcgagttt gcccgatgcc ttgccgccac
      481 gcgccaccgc gctgcgccgt ctcgccgatg ccctcgccgc caatcccacg ttgcccgccg
      541 ccgaggctcg tgcgctgcat ccaaaagcgc gcgcgacgct cgatgaatgg cagacgcgcg
      601 gatgggtatc gctggaaacc ggcgatgcgc cggagcagga cacgccgctc gcacccgccg
      661 ttgaaaaggc cgcgctgcac gccgccgacg cgcttttgcc gcaattgacc gcagagcagt
      721 ccgatgctgt cgatgccatc acgggtgcga aaggtttcgc cgcgttcctg ctgcacggcg
      781 tgaccggcag cggcaaaacc gaggtctatc tccacgcact cgccgatttg ctcggttcgc
      841 gtcccgacgc gcaagcgcta gtactcgtcc cggaaatcaa tctcacgccg caattcgaag
      901 ccgctttccg cacgcgtttc gccgcgctgc cggagggcgc catcgtgacg atgcatagcg
      961 ggctggccga aggcgaacgc gcacgcaact ggctcgcggc gcacacgggc cgcgcgcggc
     1021 tcgtgctcgg gacgcggctg gcgatcctgg cgtcattgcc gaagctgtcg ctgattgtgg
     1081 tcgatgagga acatgatccc gcctacaagc agcaggaagg cttgcgctat tcggcgcgcg
     1141 atctcgcggt ttatcgggcg aacaagttgg agattccggt ggtgctgggg tcggcgacgc
     1201 catcgctgga aagttggtgg caggccgagc agggccgata caccaagctc acgctcacgc
     1261 ggcgcgccgt ggcaacggca gtgctgccaa gcgtccgcct aatcgatctg gaagaggagc
     1321 ggcaacgtgg acgagcgtcg gtggagggct tgtcggggcc gctgatcgcc gcgatgaaaa
     1381 tgcgcctgga acgcggcgag caaagcctcg tgtttctcaa ccggcgcggt tacgcaccca
     1441 ttctttcgtg tgacgcttgc ggctgggtcg ccggctgtcc gcggtgcagc gcctacgtcg
     1501 tgcttcacaa gcccgagcgc gcgttgcgtt gccaccattg cggctgggaa tcgcgcatcc
     1561 ccaagtcctg tccggattgc ggcaacgtgg atatcgcgcc catgggccgc ggcacgcagc
     1621 gcgtagaaga aacgctcgcg acggcggtac cgggagcgag ggtgttgcgc atcgatgccg
     1681 acagcacgcg gcgcaagggc agcgcacaag cccttttctc cgatgtccac gcaggcgagg
     1741 tcgatatcct cgtcggcacg cagatgattg cgaaagggca cgattttcaa cgggtcacgc
     1801 tggtaggcgt gctcaacgcc gataccgcac ttttttccca cgatttccgg gcgagcgagc
     1861 ggctttttgc ccaactgatg caggttagcg gacgggcggg gcgcgccggc ttgccgggcg
     1921 aagtgatgat ccagacgcgc tacgcgcggc acgcgcttta tcacgcgctg gcgcggcacg
     1981 actacgttgg ttttgccaat tcgacgctgg ccgagcgccg cgacgcgcat ctgccgccct
     2041 tcgtctatca ggcgatgctt cgtgccgaag gacgtacgct cgagaccgcg ctggactttc
     2101 tgggggctgc ggcggcagag ttcgccgcgc tcgccggtgc agaacgcgtg accgtgtacg
     2161 acgcggtgcc gttgactatc gtgaaggtgt ttaacgtgca ccgcgcgcag ttgttgctgg
     2221 agtgcgcgtc gcgggctgtt ttgcagaatg cgttgcgggc ctggcagccg gcgttacgca
     2281 gtctcaagat aaaaggcgtg atccgatgga atgtcgaggt cgatccgctc gatatctagg
     2341 ttcgctcgag ccggcaagcg ggtctttggc ctcgcgttgc ccggcgcctc cgccgttcag
     2401 ctattgccgc ggtctgcgcc ttgcacgcgt gcaaccgtca ggccgccgac cttcatgtcg
     2461 ccaccatcgt cgcgagtgcc gccctcggga cgctcgacgt gcggatgcgc gccgcggatg
     2521 aacaacacca cacacagcgt acacatcgcc caaatgctac aaacaatcat ccaagtgctc
     2581 atatcctctt ctccccgaaa ccgcgcggct gaaatttaag acggccgcaa agtttcatcg
     2641 ctgagatggc cgtaccagtt cttatcggca ccaggaagca attacttagg ggtggttcaa
     2701 gaataattat cagacaagaa atcctaaagc acgcccagac caaaccgcca tcctcaatta
     2761 cccgtaattc cttgttccga aaggattttt gaaaggtgca acccatctcg aaatgttggt
     2821 tgcacctttt ttaagagcgg gttacgattc ggccactttt caagctatcg ccggtcccga
     2881 ttccggcaag gagggatata tggcgagcac aaccctgggc gtcaaagtcg acgatctgct
     2941 gcgtacccgt cttagagacg ccgccacgcg gctcgaacgg accccgcact ggctgatcaa
     3001 gcaagccatc ttcgcgtatc tcgaacgcat cgaacatgga cagttgccgc ctgaactgtc
     3061 cggtgcaatg ggttcagccg atacgctgga accctctgcg ctcgccgatt cggaggagga
     3121 cggcgcgccg catcccttcc tcgatttcgc tcagaacgtt caaccgcaat cggtgttgcg
     3181 cgccgcgatc acggcagcgt accggcgtcc ggaaccggaa tgcgtgccgt tcttgatcgg
     3241 tcaggcgcgg ttgtcgaccg gggtcgcagc cgaaacgaat gccatggcga cgaagcttgt
     3301 cgaagcgctg cgcaagaaac aaacgggcgg cggtgtcgaa gggctgatcc acgagttttc
     3361 gctgtccagc caggaaggcg tcgcgctgat gtgtctcgcg gaagccttgc tgcgcattcc
     3421 cgatcgcgcc acccgcgacg cgctgatccg cgacaagatc agcaagggcg actggcgctc
     3481 gcacatgggc caggcgccgt cgctgttcgt gaacgcggcg acgtggggcc tgatgatcac
     3541 cggcaagctg gtgacaacaa atagcgaagc ggggttgtcg tcggcgttga cgcggttgat
     3601 cgggcgcggc ggcgagccgc tgatccgcaa gggtgtggat atggccatgc gcctgatggg
     3661 cgagcagttc gtcacgggcg agacgatttc ggaagcgttg gcgaacagcc gcaagttcga
     3721 agcgcgcggt ttccgttact cctatgacat gcttggcgaa gccgcgacga cagaagaaga
     3781 cgccgttcgc tattacgcat cgtatgaaca ggcgattcac gcgatcggca aggcggcggg
     3841 atcgcgcggc atttacgaag gcccagggat ttccatcaag ctgtccgcgc tgcatccgcg
     3901 ttactcgcgc tcgcagcagg aacggacgat ga
//
LOCUS       DATGBK010000728         2467 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_8706, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000728 DATGBK010000000
VERSION     DATGBK010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2467
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8706"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            358..945
                     /locus_tag="VKJ77_10305"
     CDS             358..945
                     /locus_tag="VKJ77_10305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010107934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HMC45702.1"
                     /translation="MSASPNIPGTRPPRHSMKPLPAVIFMSRWLQVPLYLGLIVAQGV
                     YVVLFLKEVWHLVTHMTTLDETNIMLVVLGLIDVVMISNLLIMVIVGGYETFVSRLGV
                     EGHPDQPEWLDHVNAGVLKVKLSMALISISSIHLLKTFINPDQYSEHAVLWQVIIHVA
                     FLASALIMAWVDRLTTHTHPEHFHEPSGTPAKAHE"
     gene            1036..>2467
                     /locus_tag="VKJ77_10310"
     CDS             1036..>2467
                     /locus_tag="VKJ77_10310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011549402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HMC45703.1"
                     /translation="MTIIKQEDLIQSIADSLQHISYYHPLDYIQALGRAYELEESPAA
                     KDAIAQILTNSRMCAEGHRPICQDTGIVTVFVKVGMDVRWDGATMGVTDMINEGVRRG
                     YLNPDNVLRASIVSPPEGARKNTKDNTPAVIHYEIVPGDKVDVQIAAKGGGSENKTKF
                     AMLNPSDSIVDWVLKTVPLMGAGWCPPGMLGIGIGGTAEKAMVMAKESLMDAIDIQDV
                     IARGPQDWIEELRVELHEKVNALGIGAQGLGGLATVLDVKIMAAPTHAASKPIAIIPN
                     CAATRHAHFTLDGSGVAKLDVPSLDAWPKVEWVANTETSQRVDLNTLTKEQVAAWKPG
                     QTLLLSGKMLTGRDAAHKRIADMLAKGEKLPVDFTNRVIYYVGPVDPVREEVVGPAGP
                     TTATRMDKFTDMMLSQTGLISMIGKAERGPVAIEAIKKHKAAYMMAVGGAAYLVSKAI
                     RGAEVIAFDDLGMEAIYEFDVQDMPVT"
BASE COUNT          523 a          755 c          746 g          443 t
ORIGIN      
        1 cgactgtcgc gcatggcgtc gcactggcgt gcgtggtcac cgggatcgtc ctggccagca
       61 tgaaggcgaa aacggcgcca ccgatgatct cttgaccggg aacggcttcc gaacgggatt
      121 caaacggaat ttgtacgggt ctcgcacagg tttcgcatgc gcgtcggaac cgccattgag
      181 caggttctgg ggcccgctga gtgagcgaac ttcctcaggg ttgacccgca acccggttgc
      241 agcgtcgcgc tacaatgatg tgctttctca aaaaatgagc gtgaaatgcc gtttcacgct
      301 cgccacgtcc aaagcacgta ctcgatttaa ccaaccttcc acgacccggc accgctcatg
      361 tccgcatccc cgaacatccc cggcacccgt cctccccgcc attccatgaa gccccttcca
      421 gcagtcatct tcatgagccg ctggctccag gtgccgctgt atctcggcct gatcgtggcg
      481 cagggtgtct acgtcgtcct gttcctgaag gaagtctggc acctcgtcac ccatatgacg
      541 acgctcgacg aaaccaacat catgctggtc gtcctcggcc tgatcgacgt ggtgatgatt
      601 tccaacctgc tgatcatggt gatcgtgggc ggctatgaga cctttgtctc acggctcggc
      661 gtagaaggtc accccgacca gccggaatgg ctcgatcacg tgaacgccgg cgtgctgaag
      721 gtgaagctgt ccatggcgct catcagcatt tcgtccatcc atctgctgaa aaccttcatc
      781 aacccggacc agtactccga gcacgcagtg ctgtggcagg tgatcattca tgtggcattc
      841 ctcgcgtcgg cgctgatcat ggcgtgggtc gaccgcctga ccacgcatac gcatccggag
      901 cattttcacg aaccttccgg cacacccgcc aaggcgcacg agtaagcatc agcaagcagc
      961 ggcacaacac ccatgagcgc tatttaaagt gccgcaaaca gtcccgataa cgccccgttc
     1021 ccacacgttc aagccatgac catcatcaag caggaagacc tgattcagag cattgcggat
     1081 tcgttgcagc acatcagcta ttaccatccg ctcgactaca tccaggcact cggccgcgca
     1141 tacgaactcg aagagagtcc ggccgcgaaa gacgccattg cgcagatcct gacgaacagc
     1201 cgcatgtgcg ctgaagggca tcggccgatc tgccaggaca cgggcatcgt cacggtgttt
     1261 gtgaaagtgg gcatggatgt gcggtgggac ggtgccacca tgggcgtcac cgacatgatc
     1321 aacgaaggcg tgcgccgcgg ttatctgaac cccgacaacg tgctgcgcgc atccatcgtg
     1381 agcccgcccg aaggcgcgcg caagaacacg aaggacaaca cgccagcggt gatccactac
     1441 gagatcgttc ccggcgataa agtcgacgtc cagatcgcgg ccaaaggcgg cggctcggag
     1501 aacaagacga agttcgcgat gctgaacccg tcggattcga tcgttgactg ggtgttgaaa
     1561 accgtgcccc tgatgggcgc cggctggtgc ccgcccggca tgcttggaat cggcattggc
     1621 gggacggcgg agaaagcgat ggtcatggcg aaggaatcgc tgatggacgc catcgatatc
     1681 caggacgtca ttgcacgcgg accgcaggac tggatcgaag agttgcgcgt ggagttgcac
     1741 gagaaggtca acgcgctggg tatcggcgcg cagggtctgg gtggcctcgc caccgtgctc
     1801 gatgtgaaga tcatggcggc gcccacgcac gcggcatcga agccgatcgc gatcatcccg
     1861 aactgcgcag ctacacgcca cgcgcatttc acgctcgacg gctcgggcgt ggcgaaactc
     1921 gacgtgcctt cgctcgacgc atggccaaag gtcgaatggg tcgcgaacac ggagacgagc
     1981 cagcgcgtgg acctgaacac gttgacgaag gaacaagtcg cggcatggaa gccgggccag
     2041 acgctgctgc tgtcgggcaa gatgctgacg ggacgggatg ctgcgcacaa gcgtattgcc
     2101 gatatgctcg ccaagggcga aaagcttccc gtcgatttca cgaatcgcgt aatttattac
     2161 gttggcccgg tggaccccgt ccgcgaggaa gtcgttggcc cggcaggccc caccacggcc
     2221 acgcgcatgg acaagttcac ggacatgatg ctgtcgcaga ccggcctgat ctcgatgatc
     2281 ggcaaggcag agcgcggccc ggttgccatc gaggcgatca agaagcacaa ggccgcctac
     2341 atgatggccg tgggcggcgc ggcgtacctg gtgtcaaagg cgattcgcgg cgcggaggtc
     2401 atcgcgttcg acgacctggg catggaagcc atctatgaat tcgacgttca ggatatgccg
     2461 gtcaccg
//
LOCUS       DATGBK010000729         2163 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_309795, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000729 DATGBK010000000
VERSION     DATGBK010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309795"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(247..1209)
                     /locus_tag="VKJ77_10315"
     CDS             complement(247..1209)
                     /locus_tag="VKJ77_10315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006220199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45704.1"
                     /translation="MISTEDLHFFITLTAAASLADAARKLDVTPPAVTQRLHLLEKRL
                     GMRLIDRSGRRMVLTDEGELLAVHARRICDDIGNLSDTLASRRGTVAGHLRVIAPLGF
                     GQRYVAPVIAQFRSLYPEVTASLMLSDRPTHVSDDSWDLMVHIGELRDSTLVSRRLAP
                     NRRILCAAPRYLALRGEPLHPDELRAHDCIALRENDEDVTMWRFMPKHHGTPANVRIE
                     PCLTSNDGGTVRDWALAGLGIIARSEWDVAEHLHAGRLVPLLDGWQLPDADVVALISS
                     RHGRSLRATRFLDHLYSSLSQLLWLPSVAGEPAERGRPLPPVAR"
     gene            1439..>2163
                     /locus_tag="VKJ77_10320"
     CDS             1439..>2163
                     /locus_tag="VKJ77_10320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006157398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M81 family metallopeptidase"
                     /protein_id="HMC45705.1"
                     /translation="MKNPRIAILGFAIESNRFAPVSTRADFLSRAYLQDTALLLDARS
                     EAPVMTPEIPAFVRTMDAIGPWTPVPILFANAESGGPVEHAFFADTLREFEKRLRAAL
                     PLDAVYICEHGAAITTEEDDPDGVVFTLVRRIVGPAVPIVATVDLHANVSDRMVDAVD
                     ALVSYRRNPHTDMAERGAEAAWIAIELLNGMRTCVAHVRMPVCAPPTQLLTAPGTGPY
                     AEMIRRAEALDDPRIVNISIAGG"
BASE COUNT          442 a          671 c          655 g          395 t
ORIGIN      
        1 gaacattcaa ggaactggta tcgaatggct aaggccacgc ttttcgacga tgcgctgttc
       61 ggcgtgacaa gtcccggcga cgaagagatt gcctcatgcg ccaacaacac ggccacccag
      121 atgctgaccc tcatggaagc cggtcagttt taatcgggac gctcaatttc agcatgaaaa
      181 gcatgactaa ttaaacagat gaatagagct gctatacggt ggactgtgca gtttttccgg
      241 agcctttcac cgggcaaccg gcggtagcgg gcggccgcgc tctgccggtt cgcctgcgac
      301 ggacggcagc caaagcagtt gcgatagcga cgagtacaga tggtcgagaa agcgcgtagc
      361 gcgcaacgag cgtccatgtc gcgaactgat caacgcaacg acatcagcat ccggcaattg
      421 ccacccgtcg agcagcggga ccagccggcc cgcgtgcaga tgttcggcga cgtcccattc
      481 ggaacgcgca atgatcccga gtccggcaag cgcccaatcg cgcacggtgc cgccgtcgtt
      541 gctcgtcagg cacggctcga tcctgacatt cgccggtgtg ccgtggtgct tcggcataaa
      601 gcgccacatt gtcacgtctt catcgttttc gcgcagcgcg atgcagtcgt gcgcacgcag
      661 ttcatccgga tgcagaggtt cgccgcgcaa cgcgagatag cgcggcgccg cgcacaggat
      721 gcgccggtta ggcgcaagcc gtcggctgac cagcgttgaa tcgcgtagct cgccaatatg
      781 aaccatcagg tcccaagagt cgtccgaaac gtgcgtgggg cgatcggata gcatcaggct
      841 tgcggtcact tccggataga ggctgcgaaa ttgcgcaatc acgggcgcga cgtaccgctg
      901 cccgaagccg agcggcgcaa tcacccgcag gtgccccgcc accgtccccc gccgcgacgc
      961 cagcgtgtcc gacagattgc cgatgtcatc gcagatcctg cgcgcgtgca ccgccagcag
     1021 ttcgccctca tcggtcagca ccatgcgtcg gcccgaccgg tcgatcaagc gcattcccag
     1081 ccgcttttcc aagagatgca agcgctgtgt cacagcaggc ggcgtgacat cgagcttgcg
     1141 cgcggcatcc gcgagcgaag cggcggccgt cagcgtaatg aaaaagtgca ggtcttcggt
     1201 cgagatcatt aagctgcgcg ttaagttgca tgttaacgaa gcaataagaa gatgttaacc
     1261 cccgcggcta tttgacggcc aatactcttt tcaccgcgtg cgaactcagg tgccgatgtt
     1321 cgcattcatc cactgcacgc caccgtaacg cggatggaaa tgcgattgcc tttgatgacc
     1381 cgccggaaac gtcagtgccc aatgccggcc gacgacgccg gccgatgagg agcgattgat
     1441 gaaaaacccg cgcattgcca ttcttggctt cgcgatcgag tcgaaccggt ttgcaccagt
     1501 ttcgacgcgc gcagatttcc tgtcgcgtgc gtatctgcaa gacaccgcgc ttctgcttga
     1561 cgcgagaagc gaggcacctg tgatgacgcc ggaaatcccg gcgttcgttc gtacgatgga
     1621 tgcgatcgga ccctggacgc ccgtaccgat cctgttcgcg aatgcggagt ctggcggacc
     1681 ggtcgagcac gctttcttcg ccgacacgct gcgcgaattc gagaagcggt tacgcgcggc
     1741 gttgccgctt gacgccgtct acatctgtga gcacggcgcc gccatcacga cagaagaaga
     1801 cgatcccgac ggtgtggtgt tcacgctcgt acgccgtatc gtcggaccgg cagtaccgat
     1861 cgtcgccacc gtcgacctgc atgcgaacgt gtcggaccgg atggtcgacg cagtcgacgc
     1921 gctcgtgtcg taccgccgca atccgcacac cgatatggcc gaacgaggcg ccgaggcggc
     1981 gtggattgcc atcgaactgc tgaacggtat gcgcacgtgc gtcgcccatg tgcgaatgcc
     2041 cgtctgtgca ccgccgacgc agttgctgac agcaccaggc acagggccgt atgcagaaat
     2101 gatccgacgc gctgaagcgc tcgatgatcc gcgcatcgtg aacatctcga ttgccggtgg
     2161 att
//
LOCUS       DATGBK010000730         2166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_332909, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000730 DATGBK010000000
VERSION     DATGBK010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332909"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1456
                     /gene="malQ"
                     /locus_tag="VKJ77_10325"
     CDS             <1..1456
                     /gene="malQ"
                     /locus_tag="VKJ77_10325"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HMC45706.1"
                     /translation="EEAAQAAIKTAGVADEFTELEALQLIDWPRVVTAKLAVLRALFA
                     QFQAQNNDMLHKDFTRFVKRGGRALEDHARFEALQAAQLLEANEGHWRNWAGELRDPR
                     SAAVAEFAAAHKNEVDFFLFAQWLAAKGLSHAQHVARDSGMAIGLIADLAVGCDSAGS
                     HAWSYRDEMLQGVSVGAPPDLFNQAGQSWGLTTFSPRAMRTQGFSAFIDMLRAAFTLA
                     GGIRIDHILGLRRLWLVPDGESAKNGAYLRYPLDDLLRLIALESWRHKAIVIGEDLGT
                     VPPGFRERLQEHGLLGIRVLWFERAEKGPGFKVPGDWDRGVAATTTTHDLPTVTGWWI
                     GEDIVWRSKIGQTAARADGQDPVEVAQVERGEDRKLLWSAFQEAGVAAPDVSVPADIS
                     PHTAPVDEALAFVASTPAPLALYPLEDLLALAEMPNLPGSIDEHPNWRRRLAVPVSEL
                     FDDDSFVDRLLAVDQARQKSAQTKAATHNASPTD"
     gene            1461..>2166
                     /locus_tag="VKJ77_10330"
     CDS             1461..>2166
                     /locus_tag="VKJ77_10330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HMC45707.1"
                     /translation="MTVPRSTLRLQLHKDFTFDDAARQVDYMAALGISHAYLSPITTA
                     TSGSTHGYDTVDYTRVNPELGGEEGLKRFVEKLRAHQMGVIVDVVPNHMGVGGSENLW
                     WMDILEWGRHAAHARYFDIDWHSPDPALRGKVLAPFLGAAYGEELQGGKIKLAFDADT
                     GRFKIEYYAHTFPVSPLDYTSVLQDHAPEMAQRFTGLSTQPGDQPRADEARAALKEYA
                     ATAEGRHAIDTAVQAHS"
BASE COUNT          410 a          690 c          688 g          378 t
ORIGIN      
        1 cgaggaagca gcccaagcgg caataaaaac agcgggtgtc gccgatgaat tcaccgaact
       61 cgaagcgctg cagctgattg actggccgcg cgtggtgacg gcgaaactgg cggtgctgcg
      121 ggcgctgttc gcgcagttcc aggcgcaaaa caacgacatg ttgcacaagg atttcacccg
      181 cttcgtgaaa cgcggcggac gcgcactgga agatcacgcg cgcttcgagg cacttcaggc
      241 tgcgcaatta ttagaggcca acgaaggcca ctggcgcaac tgggccggtg aactacgcga
      301 tccgcgcagc gcggccgtcg cggaattcgc cgccgcgcat aagaacgaag tcgatttttt
      361 cctcttcgcg caatggctcg cggccaaggg cttgtcgcat gcacagcacg tcgctcgcga
      421 ctcgggcatg gcgattgggt tgatagcaga tctggccgtg ggttgcgaca gcgcgggcag
      481 ccacgcctgg tcgtatcgcg acgaaatgct gcaaggcgtg tccgtcggcg cgccaccgga
      541 tttgttcaac caggcgggac aatcctgggg cctcactacg ttctctcccc gtgctatgcg
      601 tacacaggga ttctcagcgt ttatcgatat gctgcgtgcc gcgttcacgc tcgcgggcgg
      661 gattcgtatc gatcacatcc tcggcttgcg gcgtctatgg ctcgtgcccg acggcgaaag
      721 cgcaaagaac ggcgcgtacc tgcgttatcc gctcgacgac ctgctgcggc tgatcgcgct
      781 cgagtcgtgg cggcataaag ccatcgtgat cggcgaggat ctcggcacgg ttccgccggg
      841 ctttcgcgaa cgcttgcagg aacacggcct gctcggcatc cgtgtgctct ggttcgaacg
      901 cgcggaaaaa ggcccgggct tcaaggtccc cggcgactgg gatcgcggcg tggccgcgac
      961 caccaccacg cacgacctgc cgacggttac cggctggtgg atcggtgagg acatcgtgtg
     1021 gcgctcgaag atcggccaga ccgccgcgcg cgccgacggg caggatccgg tcgaagtggc
     1081 ccaggtggag cgtggcgagg atcgtaaatt gctgtggtct gccttccagg aagccggtgt
     1141 cgccgcgccc gatgtctccg tgcccgccga tatctccccg cacacagcac cggtagacga
     1201 agcgctcgcg ttcgtggcgt ccacgcccgc gccgctcgcc ctatacccgc tggaagattt
     1261 gctcgcatta gccgagatgc cgaacctgcc cggttccatc gacgagcatc cgaactggcg
     1321 ccggcggctg gctgtacccg tatccgaact ctttgacgac gattcattcg tcgaccgcct
     1381 gctcgcggtc gaccaggccc ggcaaaaatc cgcccagacg aaggcggcca cgcataacgc
     1441 ttcacccacc gactgagacc atgaccgttc cacgctccac gctccggctg cagctacaca
     1501 aggatttcac cttcgatgac gccgcgcgcc aggtcgacta catggctgcg cttggaatca
     1561 gccacgcgta tttatcgccg atcacgacag cgaccagcgg ctcgacacac ggctacgaca
     1621 ctgtggatta cacccgtgtc aatccggaac tcggcggtga ggaagggttg aagcgcttcg
     1681 tcgaaaagct gcgtgcgcat cagatgggcg tgatcgtgga cgtggtgccg aaccacatgg
     1741 gcgtgggcgg gtcggaaaac ctctggtgga tggatatcct cgaatgggga cgccacgcgg
     1801 cgcatgcacg ctatttcgac atcgactggc attcgcccga tcccgcgttg cgcggcaaag
     1861 tgctcgcgcc attcctgggt gccgcgtatg gcgaggaatt gcagggcggc aagatcaagc
     1921 tcgccttcga cgccgacaca ggccgcttca agatcgaata ctacgcgcac acgtttccgg
     1981 tgagtccgct cgactacacg tcggtgttgc aggaccacgc gccagaaatg gcgcagcgct
     2041 tcacgggttt gtccacgcaa cccggcgacc agccgcgcgc cgacgaagcg cgggcggctt
     2101 tgaaagagta cgcagcgacg gccgagggta ggcacgctat cgacaccgcc gtgcaagcgc
     2161 attccg
//
LOCUS       DATGBK010000731         1747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_332923, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000731 DATGBK010000000
VERSION     DATGBK010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332923"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VKJ77_10335"
     CDS             complement(<1..341)
                     /locus_tag="VKJ77_10335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HMC45708.1"
                     /translation="MPSTLYTDPRLVALYDTLNPCAADTDFYLALAAGTQRVIDLGCG
                     TGLLACELASRGHRVIAVDPAPEMLHVARHRPNGDRVQWIEGDARALALLPPAELLVM
                     TGHVAQVFIDDT"
     gene            complement(385..1185)
                     /locus_tag="VKJ77_10340"
     CDS             complement(385..1185)
                     /locus_tag="VKJ77_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45709.1"
                     /translation="MNELETSVVVFLCLLAATGLGAFVRPLLPEEHKAHETVQLLKLV
                     VGMLVTFAALVLGLLTASSKTVFDTTTTDIRTYAAELIQLDNSLREYGPEADAPRRVL
                     RAYTAAAIASTWAQEPPPPGDYYEKTLPSYGTDNLDSRVLGAMLERAQRYTRALQPPD
                     QFHQKLAEEALGRFDRLIQQRWKIVEEARGSASSPFDRILVFWLLVIFLCFGLIAPRN
                     ALALVTIMLGALSIASTVLVILDLDTPFTGSILVPSQSMRDALAYLSR"
     gene            1344..1634
                     /locus_tag="VKJ77_10345"
     CDS             1344..1634
                     /locus_tag="VKJ77_10345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45710.1"
                     /translation="MKQTKYWAAAFALALAASGCAFANVAADNVIRSAAPANDRVMGN
                     ECTDKSIKPFARPKDSTVSDDVLRTALTLISGFASGSSRGAAPRMCGDQSAL"
BASE COUNT          348 a          485 c          579 g          335 t
ORIGIN      
        1 gtgtcgtcga tgaaaacctg cgcgacgtgg cccgtcatca ccagcagctc ggcgggcggc
       61 agcaaggcga gtgcgcgggc atcgccttca atccactgaa cgcggtcccc gttcggtcta
      121 tgtcgcgcca cgtgcaacat ctcaggcgcg ggatcgacgg caatcacccg atgcccccgc
      181 gacgccagtt cacacgcgag caaacccgtt ccgcaaccga gatcgattac gcgctgcgtg
      241 cctgcggcca gcgccaggta gaagtcggtg tcggcggcgc aggggttcag ggtgtcgtac
      301 agcgcgacga ggcgcgggtc agtgtagagc gtggatggca tcggaaaagt tggcgggagg
      361 gttaagcgtg gagcgttcag cgtttcagcg gctgaggtac gcaagcgcgt cgcgcatgga
      421 ctggcttggc acgagaatgg agcccgtgaa cggcgtgtcg agatcgagga tcacgagcac
      481 cgtggacgct atcgataatg ccccgagcat aatcgtaacc agcgccagtg cgttacgtgg
      541 tgcgatcagg ccaaagcaaa ggaagatgac gagcagccag aagaccagaa tccggtcgaa
      601 cggcgaagac gccgaaccgc gcgcttcctc cacgattttc cagcgttgct ggatcagccg
      661 gtcaaaccgg ccaagcgctt cttcggcgag cttctggtgg aactgatcag gcggctgtaa
      721 cgcgcgtgtg tatcgttgcg cccgttcaag catggcgccc agtacgcggc tatcgagatt
      781 atcggtgccg tagctcggca gcgttttctc ataatagtcg ccgggaggcg gcggttcctg
      841 cgcccaggtg gacgcgatcg cggccgccgt gtaggcgcgc aggacccggc ggggagcgtc
      901 ggcttccggg ccatactcgc gcaagctgtt atcgagctgg atcagctcgg cggcataggt
      961 acggatgtcg gtggtggtgg tatcgaatac agttttggat gatgccgtca gcaagcccag
     1021 cacgagcgcc gcgaacgtaa ccagcatgcc gaccaccagt ttgagcaact gcacggtttc
     1081 atgcgcctta tgttcctcag gcagcagcgg gcgcacgaac gcacctagcc ccgtggccgc
     1141 gagcaggcac aagaacacga cgacagaggt ttcgagttca ttcatggcga gggtcgggga
     1201 cgtttgtatt atcggatgaa atggcgggtt gttccagacg aatgggttag tgcggcgggg
     1261 tgtggcgcga ttaagttgac cctatgatga agtggcaacg ataatccaca gttgtgcttg
     1321 ttaatcgatc ggtgagagag agtatgaaac agacgaaata ctgggctgct gcgtttgctt
     1381 tggctttggc agccagtggt tgcgcattcg ccaacgtcgc cgccgataac gtcatccgca
     1441 gcgcagcgcc tgcgaacgac cgcgtcatgg gcaacgagtg tacggacaag tcgatcaaac
     1501 cattcgcgcg gccaaaggac agcacggtat cggatgatgt gttgcgaacg gcgttgacct
     1561 tgatttcggg ttttgcgagc ggaagcagtc gtggggccgc gcctcgcatg tgcggcgacc
     1621 agtcggcgct ttagtttgtt gcttcatggg ggtgttcccg attccccgaa cgcgtcatcc
     1681 cggcggatag cccccgcctt tcttgagcac ttctgtcgca gacctgattc gggcgattgc
     1741 acaaacc
//
LOCUS       DATGBK010000732         1687 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_78288, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000732 DATGBK010000000
VERSION     DATGBK010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78288"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1198)
                     /locus_tag="VKJ77_10350"
     CDS             complement(<1..1198)
                     /locus_tag="VKJ77_10350"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HMC45711.1"
                     /translation="MNMHPRQRFDTFVTGSLAPRARRAPVLLLAAIFAWPTAALAQGS
                     NAASRFHQYESQQAFVPAFVPLGLKGGGRVKVVVVMAADSVAAARARVPGRVLTTDEK
                     RAVENLVAADHRRIEPEITSRGGHVLARFHHALNGIKIEIDRNQVAQLAALPGVVEVL
                     PVLKHRKNNAVSVPFIGAPIVWQGTPGFRGEGVKIAIIDTGIDYTHANFGGPGTVADF
                     QVAAAASTGPANPALFGPNAPKVKGGTDLVGDAYDAGADPGSPALIPHPDPNPLDCNG
                     HGSHVAGTAAGFGVRTDGTTYAGPYDSAAYQSGFRIGPGVAPKADIYSVRVFGCNGST
                     DVVTEAIDWAVQNDMDVISMSLGADFVTAKSADALAAQNAARAGIIVVAAAGNAGPAP
                     YIAGSPA"
BASE COUNT          299 a          555 c          545 g          288 t
ORIGIN      
        1 acgcggggga tcccgcgatg tacggcgccg gaccggcgtt gcccgcggcg gccaccacga
       61 tgatgccggc cctggcagcg ttctgtgccg ccagcgcatc ggcgctcttc gccgtgacga
      121 agtcagcgcc gagcgacata ctgatgacgt ccatgtcatt ttgcacggcc cagtcgatcg
      181 cctcggtcac gacgtcggtc gaaccgttgc agccgaacac gcgcacagag tagatgtccg
      241 ccttcggcgc gactccgggc ccgatcctga accctgattg atacgccgcg ctgtcatacg
      301 gtcccgcgta ggttgtaccg tcggtacgca caccgaagcc cgcagcggtg cccgcgacgt
      361 ggcttccgtg tccgttgcag tcgagcggat tggggtcggg atgcggtatc agcgccgggc
      421 tgccaggatc ggcacccgcg tcgtaggcat cgccgacgag gtcggtgccg cctttcacct
      481 tgggcgcgtt cggcccgaac aacgccggat tggccggccc tgtgctggca gcggctgcca
      541 cctggaagtc ggcgaccgtg ccggggccac cgaagttggc gtgcgtgtag tcgatcccgg
      601 tatcgatgat cgcgatcttg acgccttcgc cgcggaaacc cggcgtgcct tgccacacga
      661 tcggcgcgcc aatgaacggc acgctcaccg cgttgttctt gcgatgcttc aggaccggca
      721 aaacctccac gacgccgggc aacgcggcga gctgcgcgac ctgattgcga tcgatttcga
      781 tcttgattcc gttcaaggca tggtggaagc gcgcgagcac gtggccgccg cgacttgtaa
      841 tttcgggttc gatgcgtcga tgatcggccg caaccaggtt ttcgaccgcg cgcttctcat
      901 cggtggtcag cacacgaccc ggcacccgcg cccgcgccgc agcgactgag tcggcggcca
      961 tgacgaccac gaccttgacg cggcctccgc ccttcagacc gagcggaacg aaagccggca
     1021 cgaaggcttg ctgcgactcg tactgatgga agcggctcgc ggcattggaa ccttgcgcaa
     1081 gagcggccgt gggccacgca aagatcgccg ccagcagtag aaccggagcc ctgcgcgccc
     1141 ttggcgcaag cgagccggtg acaaaagtat cgaaacgttg tcgcgggtgc atattcatgt
     1201 gagattctcc ccagattatt gttcgcaaga aggtggcgcg cgtccggccg cctcatacaa
     1261 acgcttttcg ggcgctccgc gacgcgcgtc acggacaatc atgcgccggg cgcgcgcaat
     1321 cggtcaagag gccgtcatgc tcatcacgct tgggcgatgc cggaacgagg tttatttttt
     1381 ccctctcacg caacgacata cgcccacagc gtaggctctg gcctccgaga ggcgcacgaa
     1441 aataggtgca aacgcaatgg cgacggcgcc gaggagcaga gcgccaaaag cgagcgactt
     1501 gcgcgcggac tcagtctggt tcatgccagg atttgcggca tggcgcagtc cttggcgctg
     1561 caggtctggc gcagcccggc gtccagcgcc acgcgctggt cgaacacgaa gcactcgccg
     1621 cggaaatgcg cgccgccgca ttgctcgaag tagttgagaa taccgccccc gagctggtag
     1681 acctcgc
//
LOCUS       DATGBK010000733         3374 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_217383, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000733 DATGBK010000000
VERSION     DATGBK010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3374
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217383"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /gene="fliH"
                     /locus_tag="VKJ77_10355"
     CDS             complement(<1..705)
                     /gene="fliH"
                     /locus_tag="VKJ77_10355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HMC45712.1"
                     /translation="MHMSDAAEAAKKAHAADAAKKARMSAYQRWEMASFDPVPIDRSG
                     ADQAALEKHLRRVRDEAHAQGLASGHVAGQAMGYKAGYDQGYQQGVEEGRRDARAEAA
                     RLAQMADTFKIALQAADAVVAEALTALALDIAQQVVPQHLTLDPTAVLAVARSVIAAE
                     PALAGAPYLTVNPADLPIVEAYLLEELQAAGWSVRTDPDIERGGCRAQAASGEIDATN
                     VTRWERVAAALGRSQPW"
     gene            complement(692..1687)
                     /gene="fliG"
                     /locus_tag="VKJ77_10360"
     CDS             complement(692..1687)
                     /gene="fliG"
                     /locus_tag="VKJ77_10360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009433 - bacterial-type flagellum basal
                     body, C ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HMC45713.1"
                     /translation="MNAEGLNKAALLLMSIGESEAAEVFKYLGPREVQKIGATMATLK
                     NVTREQLDNVMTEFVQEAEQHTALSLDSSEYIRAVLTKALGENKAGALIDRILQGSDT
                     SGIEGLKWMDSAAVAELIKNEHPQIIATILVHLDRDQASEIVALMTERLRNDVLLRIA
                     TLDGIQPAALRELDDVLTTLLSGSDNLKRAPMGGIRTAAEILNFMSTAHEESVIENVK
                     EFDAELAQKIIDQMFVFENLLELEDRAIQLLLKEVESETLIISLKGAQPPLRQKFLAN
                     MSQRAAELLAEDLDSRGPVRLSEVEAQQRKILQIVRNLAESGQIQLGGKAEDAYV"
     gene            complement(1677..>3374)
                     /gene="fliF"
                     /locus_tag="VKJ77_10365"
     CDS             complement(1677..>3374)
                     /gene="fliF"
                     /locus_tag="VKJ77_10365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020566428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HMC45714.1"
                     /translation="GTGGAGYAGGADFSGANGFGPRMPMLNQFRNNPRMPLIIAVAIL
                     AVVVAGLVMWSRQPDYRVLFSNLSDRDGGAIVAALQQGNIPYKIAESGGAILVPSDAV
                     HETRLRLASQGLPKNGSVGFELMDNQKFGISQFAEQVNYQRALEGELEKTIASISSVR
                     EARVHLAIPKPTVFVREKELPTASVMLNLYPGRALDEGQILAIQHMVSSSVPDLPVKG
                     VTIVDQDGNLLTQQSSANGLDASQLKYVQQIERNTQGRIDAILAPLFGAGNAHSQVSA
                     DIDFSKLEQTAESYGPNANPQNTAIRSQQSSLSNDSGGANAGGVPGALSNQPPAASSA
                     PVDAPASGADAGKAAPVSMRKDTTTNYEVDRTVRHYEQPMGGIKRLSVAVVVNYLKQV
                     DAKGKVTMLPLPADKLEQVQQLVKDAMGYDEKRGDSVNVVNSTFLVDSTVIPDVPWWR
                     TPDMIARAIQLAKYAGIGAVALFLYFSMVKPALRRAFPPPQPPAALPAPDDLSLLDGP
                     SMPKTQIEEEKDAEVSLLGHESNKAKFERNLDYARMVARQDPRIVATVVKNWVSDER"
BASE COUNT          538 a         1105 c         1038 g          693 t
ORIGIN      
        1 ccacggttgt gacctcccga gcgccgccgc tacgcgctcc cagcgcgtga cgttggttgc
       61 atcgatttca ccgcttgccg cctgcgcccg gcaaccgcca cgctcaatat ccgggtcggt
      121 ccggaccgac catcccgccg cctggagctc ttccagcaaa tacgcttcga caatcggcag
      181 atccgccgga ttcacggtca ggtacggcgc gcccgccaac gccggttctg ccgcgatcac
      241 cgagcgcgcg accgccagca ctgcggtcgg atcgagtgtc agatgctgcg gaaccacttg
      301 ctgcgcgatg tccagcgcca gcgccgtcag cgcctcggca acgactgcgt ctgcggcttg
      361 cagcgcgatc ttgaaggtat cggccatctg cgccagccgc gcggcttccg ctcgcgcgtc
      421 acggcggcct tcttccacgc cttgttggta accctggtcg taaccggcct tgtagcccat
      481 tgcctgaccc gccacatggc ccgatgccag tccctgcgcg tgcgcttcat cgcgaacacg
      541 gcgcaagtgc ttttccagcg cggcttggtc ggcgccgctg cgatcgatcg gaaccggatc
      601 gaacgacgcc atctcccagc gctggtatgc ggacatgcga gccttcttgg ccgcatcggc
      661 agcgtgagcc ttcttggcgg cttcggcagc gtcagacata tgcatcctcg gccttgccgc
      721 ctaactggat ctgacccgat tcggccaggt tgcgaacgat ctgcaggatc ttgcgctgct
      781 gcgcttcgac ttccgagagc cgcaccgggc cacgcgagtc gagatcttcg gccagcagtt
      841 cggcggcgcg ctgcgacatg ttcgcgagga acttctgccg cagcggcggt tgtgcgcctt
      901 tcagcgagat gatcagcgtt tcggattcca cttctttcag cagcaactgg attgcgcggt
      961 cttcgagttc gagcaggttc tcgaacacaa acatttgatc gatgatcttc tgcgccagtt
     1021 ccgcatcgaa ttccttcaca ttttcgatca cggattcttc gtgcgccgtc gacatgaagt
     1081 tgaggatttc cgccgccgtg cggatgccgc ccatcggcgc gcgcttcagg ttatcgctgc
     1141 cggagagcag ggtggtcagc acgtcgtcga gttcgcgcag cgcggccggc tggatgccgt
     1201 cgagcgtggc aatgcgcagc agcacgtcat tgcgcaaacg ttcagtcatc agcgccacga
     1261 tctcggacgc ctggtcgcgg tccaggtgaa ccaggatcgt cgcgatgatc tgcggatgct
     1321 cgttcttgat cagttcggcg acggcggctg aatccatcca cttcaggcct tcgatgccgc
     1381 tggtatcgct gccttgcagg atccggtcga tcagcgcgcc cgctttattt tcgcccagcg
     1441 ccttggtcag cactgcccgg atatattcgc tcgaatcgag cgacagcgcg gtgtgctgct
     1501 cagcttcctg aacgaactcg gtcatcacgt tgtcgagctg ttcgcgcgtc acgtttttca
     1561 acgtcgccat ggtcgcgccg atcttctgca cctcgcgcgg tccaaggtac ttgaacactt
     1621 ccgccgcttc cgattcgccg atcgacatca gcaggagtgc ggctttattg aggccttcag
     1681 cgttcatcgg acacccagtt cttgacgacc gttgcgacga ttctcgggtc ctggcgcgca
     1741 accatgcgcg cgtagtcgag attgcgttcg aacttggcct tgttgctttc gtgaccgagc
     1801 aaactgacct cggcatcctt ttcttcttcg atctgcgtct tcggcatgga cggcccgtcg
     1861 agcagcgaca ggtcatccgg cgcgggaagc gctgccggcg gctgaggcgg cgggaacgcg
     1921 cgacgcagcg ccggcttcac catgctgaaa tacaggaaca acgctacggc accgatcccc
     1981 gcgtacttcg cgagctggat cgcgcgcgcg atcatgtccg gggtgcgcca ccacggcacg
     2041 tcgggaatca cggtcgaatc caccaggaag gtgctgttga ccacgttcac cgaatcgcca
     2101 cgcttttcat cgtagcccat cgcgtctttc accagttgct gcacctgctc gagcttgtcg
     2161 gcgggcagcg gcagcatggt caccttgcct ttggcgtcga cctgcttcag atagttcacc
     2221 acgacggcaa cggacaggcg cttgatgccg cccatcggct gctcgtagtg gcgcacggtg
     2281 cggtcgactt cgtaattggt cgtggtgtcc ttgcgcatgc tgaccggcgc agctttcccg
     2341 gcgtcggcgc cgctggcggg tgcatcaaca ggcgcggacg acgcggccgg cggctggttc
     2401 gacagcgcgc ccggcacacc gcccgcgttt gcaccgccgc tgtcattcga aaggctcgac
     2461 tgctggctgc ggatcgccgt gttttgcgga ttggcgttcg gaccgtagct ttcggcggtt
     2521 tgctcgagct tcgagaagtc gatatccgcg ctcacctgcg agtgcgcgtt gccggcgccg
     2581 aacagcggcg cgaggatggc gtcgatgcgc ccctgggtgt tgcgctcgat ctgctgcaca
     2641 tatttgagct gcgacgcgtc caggccgttc gccgagcttt gctgcgtgag gaggttgccg
     2701 tcctgatcga cgatcgtcac gcccttcacc ggcaggtccg gcacgctcga cgacaccatg
     2761 tgctggatcg cgaggatctg gccctcatcc agggcgcggc ctgggtagag attgagcatg
     2821 acggacgcgg tcggcagttc cttttcccgc acgaacacgg tgggcttcgg aatggcgaga
     2881 tgaacacggg cttcgcgcac ggaggagatc gacgcgatgg ttttttccag ctcgccttcc
     2941 agcgcgcgct gatagttgac ctgctcggcg aactggctga tgccgaactt ctggttatcc
     3001 atcaattcga agccgaccga gccgttcttc ggcagaccct gcgatgccag gcgcaagcgg
     3061 gtttcgtgta ccgcgtcgct gggaaccagg atcgcgccgc ccgattcggc aatcttgtag
     3121 ggaatattgc cttgctggag cgccgcgacg atcgcaccgc catcgcggtc cgagagattg
     3181 ctgaacaaca cccggtaatc cggctggcgc gaccacatca ccaggcccgc taccaccaca
     3241 gccaggatgg cgacagcaat gatcagcggc atgcgcgggt tgttgcggaa ctgattgagc
     3301 atcggcatgc gcggaccgaa gccgttagcg ccgctgaagt ccgcgccgcc cgcgtagccg
     3361 gctccgcccg ttcc
//
LOCUS       DATGBK010000734         1739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_32681, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000734 DATGBK010000000
VERSION     DATGBK010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32681"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1432)
                     /locus_tag="VKJ77_10370"
     CDS             complement(<1..1432)
                     /locus_tag="VKJ77_10370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC45715.1"
                     /translation="MRASAFSLLVVLALSGCLLGPDYQRPVVDTPPAFRFAESDAKDL
                     VNTAWWEQFQDPALNELIATALADNKDVKTAAARVDQFLGQFVTTRSQLFPQVAAGFN
                     AQRERVPLGTQLPGAGPVLDQYQATLSASWEIDFFGKLRRQTEAARANLLASEEGRRA
                     TILTLVASVASSYVNLLSLDRQLDIAKSTVASRAASVNVFQLRFSGGEVSQMELAQSQ
                     SEYQASLASIPQIELQIAQQEDALSILLGHNPEVIVRDRELDDLALPAVPAGLPSELL
                     ERRPDLRQAEQDLVAANALIGAARALYFPSISLTGLFGSASGQFSSLFTGPARVWSYA
                     GAVTLPIFTAGSIGGQVKQAEAQQQQALFQYQKAIQVAFQEVADALISLQKTREQLVV
                     QGNQVDALRTYARLARLRFEGGYTSYIEVLDAERSLFNAQLSYAQTQGTVFTSTVSLY
                     KAMGGGWVTDAERMTATTYDGTTAMAN"
     gene            complement(1434..>1739)
                     /locus_tag="VKJ77_10375"
     CDS             complement(1434..>1739)
                     /locus_tag="VKJ77_10375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC45716.1"
                     /translation="ATERLRPIVMTSLAFILGCVPLAIATGASANSRHSIGTGVIGGM
                     LGATVIAVFFIPMFFYVLETMSEKRSGKKKTPGPTVSPPDHGAGAPTATPSAQREGD"
BASE COUNT          335 a          546 c          538 g          320 t
ORIGIN      
        1 ggttcgccat ggccgtggtc ccgtcgtagg tcgtcgcggt catgcgctcg gcgtcggtga
       61 cccagccgcc ccccattgcc ttgtagaggc ttaccgttga cgtgaacacc gtaccttgcg
      121 tctgcgcgta gctgagttga gcattgaaga gactacgttc agcatcgagc acttcgatat
      181 agctcgtata gccgccttcg aaacgcagcc gcgcgaggcg tgcgtaggtc cgtaacgcat
      241 cgacctgatt gccctgcacc accagttgct cacgcgtttt ttgcagagat atgagcgcgt
      301 ccgcgacttc ctggaacgca acctggatcg ccttttgata ctgaaacagc gcttgttgct
      361 gctgcgcttc ggcttgcttt acctgaccgc caatactgcc tgccgtgaag ataggcagtg
      421 tcaccgcccc ggcataagac cagacgcgtg cgggcccggt gaagagcgaa gagaactgtc
      481 cgctcgcgga gccgaacaaa ccggtcagcg agatagaggg gaaatagagc gcacgcgcgg
      541 cgccgatcaa cgcgttcgcg gcgaccaggt cttgctcggc ctggcgcagg tcgggacggc
      601 gttcgagcaa ttcggacggc agccccgctg gtaccgcggg cagcgcgaga tcgtccagct
      661 cgcggtcacg cacgatgacc tcagggttgt gcccaagcag gattgacagc gcgtcttcct
      721 gctgcgcgat ctgcaactcg atctgcggaa tcgacgcgag cgaggcctgg tattccgact
      781 ggctttgcgc cagttccatt tgcgacactt cgccgcccga aaaacgcaat tgaaatacgt
      841 tgacggacgc tgcacggctt gcgaccgtgg acttcgcaat atcgagctgc cgatcgagcg
      901 acagcaggtt cacatacgac gacgccaccg aggccaccag cgtcaggatc gttgcgcgcc
      961 ggccttcttc gctcgcgagc aggttcgcac gggcagcttc ggtctgcctg cgcagcttgc
     1021 cgaagaaatc gatctcccag gacgcagaga gcgttgcctg gtattggtcc aggaccgggc
     1081 ctgcgcccgg caactgcgtg ccaagcggca cacgctcccg ttgcgcgttg aacccggccg
     1141 ccacctgcgg gaacaattgc gagcgcgtgg tcacgaactg cccgagaaat tggtcaacgc
     1201 gggctgcagc ggtcttcacg tccttgttgt cggcgagcgc ggtggcgatc agctcgttca
     1261 acgccggatc ctgaaactgt tcccaccacg ctgtattgac gagatccttc gcatccgact
     1321 cggcaaagcg gaacgcaggc ggtgtatcga cgactggccg ttgatagtcc ggtccgagca
     1381 aacagccact gagcgcaagc acgacgagca acgaaaaggc ggaggcacgc atgtcagtcg
     1441 ccctcgcgtt gggcagacgg cgtagcggtc ggtgcgcctg cgccgtgatc cggtgggctc
     1501 accgtcggac caggggtctt cttcttcccg ctcctttttt ccgacatcgt ttcgagcacg
     1561 tagaagaaca tcgggatgaa gaacaccgcg atcaccgtag cgccgagcat gccgccaatg
     1621 acgccggtgc caatcgaatg ccggctgttc gccgacgcac ccgtggcaat ggcaagcggt
     1681 acgcaaccga ggatgaatgc cagggacgtc atcacgatcg ggcgcaaccg ctcagtcgc
//
LOCUS       DATGBK010000735         1519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_55515, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000735 DATGBK010000000
VERSION     DATGBK010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55515"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..751
                     /locus_tag="VKJ77_10380"
     CDS             <1..751
                     /locus_tag="VKJ77_10380"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013209703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HMC45717.1"
                     /translation="DACTARGVLVTNTPDVLTQTTADFGFALMMAAARRITESEHFLR
                     AGEWVTTGRFDMFVGGDVYGAKLGILGMGRIGQEIAKRASRGFDMDVIYHNRTPLSGA
                     TEAECGARYVDKEVLLRESDHLILVVPYSASSHHAIGRAELKQMKSSATLTNIARGGV
                     VDDLALAEALSEGSIAAAALDVFEGEPRVNPALLACKNVVLTPHIGSASIRTRRAMAS
                     LCVDNLIAALNGGRVLTAVNPQVLTQVSAAV"
     gene            1056..>1519
                     /locus_tag="VKJ77_10385"
     CDS             1056..>1519
                     /locus_tag="VKJ77_10385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440662.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC45718.1"
                     /translation="MKLHFDLATVLQGDYGALFLHGVELTLAMAGLAWCLSLVVGILL
                     TLIRLTNRRPCTMFVSTFVAYHRNVPTLVQILFWYFGISTLLPMPVQDWLNQYNGQFI
                     FAVIAIGLCSGAYLSEDIRSGLRAISYGQYEASRALGLNFVSGMRYVILPQA"
BASE COUNT          281 a          461 c          459 g          318 t
ORIGIN      
        1 cgacgcgtgc accgcgcgcg gcgtgctcgt caccaacacg ccggatgtgc tgacacagac
       61 cacggccgat ttcggcttcg ccctcatgat ggccgccgcg cgccgaatca ccgagtccga
      121 gcatttcctg cgggcgggcg aatgggtgac gaccggccgt ttcgatatgt tcgtcggcgg
      181 cgacgtgtat ggcgccaagc tcggcatcct gggtatgggc cgcattggtc aggagatcgc
      241 aaaacgcgcg tcgcgcgggt tcgacatgga cgtgatctat cacaaccgca cgccactgtc
      301 gggcgcgaca gaggccgagt gcggcgcgcg ttatgtcgac aaggaagtgc tgcttcgcga
      361 gtccgaccat ctgattctgg tcgtgcctta ttcggccagt tcacatcacg cgatcggccg
      421 ggcagagctc aagcaaatga aatcatcggc gacactgacg aacatcgcac gaggcggcgt
      481 agtcgatgat ctcgctctcg ccgaggcgct aagcgaaggc agtatcgctg ccgccgcgct
      541 cgatgtattc gagggcgaac ctcgggtcaa tcccgcgttg ctggcgtgca agaacgtggt
      601 actgacgccg cacatcggca gcgcgtcgat caggacgcgg cgagccatgg cgtcgctttg
      661 cgttgataac ctgattgccg cattgaacgg cggccgggtg ctcaccgcgg tcaatccgca
      721 agttctgacg caggtgtccg cagcggtttg atcggtggat atcgacaccg ctcacgagtg
      781 cttgatgctc acgctcgcca aggcatcgaa cgcccttcag ggaagacgaa ataaaccggc
      841 gcgcggcctt ttctggcttg gctttcgcgc attttttccg cgaccattcc cgaaacttat
      901 cgtcccagaa gaaaggcgtc tgcatggtcg tttttttgcg agctagtatg aattcatggc
      961 gaacgtcgac aagatcttcc ggcagtcaaa ggaggatgtc atcgacccac ccgggcatcc
     1021 gcatcaaggt gctctgaact cttcggacgc gtgacatgaa acttcatttc gacctggcga
     1081 cggtactgca aggcgactac ggcgcattgt tcctgcacgg cgtcgagctt acgctcgcga
     1141 tggccgggct ggcgtggtgc ctgtcgctcg tcgtaggcat tctgctgacg ctgatccgcc
     1201 tgaccaaccg gcggccgtgc acgatgttcg tgtctacctt cgtggcctat caccggaacg
     1261 tgcccacgct cgtgcagatc ctgttctggt acttcggcat ctcgaccctg ctgcctatgc
     1321 ccgtgcaaga ctggctgaac cagtacaacg gccagttcat cttcgcggtc atcgcgatcg
     1381 ggctttgcag cggcgcctat ctgtcggaag acatccgaag cgggttgcga gccatttcct
     1441 acggtcagta cgaagcatcg cgagcactcg gattgaactt cgtcagcggc atgcgttatg
     1501 tgatccttcc gcaagcctt
//
LOCUS       DATGBK010000736         2545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_332990, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000736 DATGBK010000000
VERSION     DATGBK010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332990"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(772..1878)
                     /locus_tag="VKJ77_10390"
     CDS             complement(772..1878)
                     /locus_tag="VKJ77_10390"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC45719.1"
                     /translation="MKIVHMATHAQCNGNGTVNAMVDLACMQARAGHDVAVASAGGAF
                     ESLLRRHGVTHSLLHQSRQPWRVPAMIAGFSRLIERFNPDIVHAHMMTGALISRFGSM
                     RRRFALVTTVHHDIQKSASLVRFGDRVIVGSHAVGDAMLERGVLADTLSVVTSGTIGS
                     PRFTGQQLPRPSELQHPNVVCVAAMFERNGIADLLHAFAHVRQTQDAQLYLVGEGPDR
                     GLMESLAEQLGIANHVRFTGFVPDPRAYLAEADVFVFAAHQGPGPLVISEAREAGCAI
                     VATKVGGVPEMLENGGAGVLVAPQEPMQLAAKLGWLLMDSPVRAQYAARAKRDLERFS
                     VQRVSTEHLAVYEQAIAQCERRQNRPSTRRAPVA"
     gene            complement(2008..>2545)
                     /locus_tag="VKJ77_10395"
     CDS             complement(2008..>2545)
                     /locus_tag="VKJ77_10395"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC45720.1"
                     /translation="LDTVLRALVKCPPNVHLAVAGGVANSPYPAMAAALGVAERVHFV
                     GMIRDMPTLMRCADAFVFPSRYEAMSLVLLEALACALPVITVHTTGGAEVVTEECGIV
                     LDDPDNETSLAEAISLIASDPLRTREMGQAAQALAATLSWQTMAARYLALFEDIAKTS
                     KAARRNAWARQGTASVKT"
BASE COUNT          498 a          826 c          748 g          473 t
ORIGIN      
        1 ttacaggtgc ggacgcgtga aaaacacgca tcgattgatg cgctatttga gcaggtaaat
       61 ctatttcgtt gtgtgcgcgt gcgaacgccc gcacgctatt cggtcgaact gctgttcaag
      121 gcactcggcg cgagagcgtg accaagatgc gatcacgcga tgccccaccg tctccgcata
      181 gtcggcatcg gccggcgggg gcgcgaacag ggatcgaaaa ttgcaggcgt catctcgacg
      241 ttgtgtcccg aaagagcgtc gttattcagt tgtgtgccca ttacactttc actacgctga
      301 tgattcagtg cgcccgcaca cactgcacaa gcacaccctg atatttccgc catcgcgagc
      361 acttacccgc cactgatatt ccctctcccg acgtggctcg aacgtatcga atgccatttc
      421 gcgaactcgc cggatgtagg cggggtcggc ggacgagact ggtgcatgaa catggaacga
      481 cgctcgatgc tgccgagccg gccgtaggcc gctggcagtt cccgggtcgc gcgggtcgct
      541 tcatccatcg cgaagcgacc gcgctgcgac gctggccaag cgcgatcatg cacaacggtg
      601 gctggaaagc gtcgaacgcg aattcgcggg gtgattgaaa cgcgcggtcg atcgggcaca
      661 gcattcattg aaaaaggcga tcaggatgac ctgatcgcct cttttatctt ccgcaacaaa
      721 cgactaatgc ccaatcaaac ggcccggaac ctgcagccgc cggataacct gtcacgccac
      781 cggcgcacgc cgtgtcgacg gacggttttg tcggcgttca cactgggcaa ttgcttgctc
      841 atagaccgct aaatgttccg tggacacgcg ctgcaccgag aaacgctcca gatctcgctt
      901 cgcacgcgcg gcatattgcg cacgtactgg cgaatccatc agcaaccatc ccagcttggc
      961 tgccagttgc atcggctcct ggggcgccac gagcacaccc gcgccgccgt tttccagcat
     1021 ctccggaacg ccgcccacct tcgtcgcgac gatcgcacaa cccgcctccc gcgcttcgct
     1081 gatcaccagc ggcccgggcc cctgatgcgc ggcgaacaca aagacatcgg cttcggccag
     1141 atacgcgcgg ggatccggga cgaatcctgt gaaccgcaca tgattcgcaa tgccaagttg
     1201 ttcggcaagg ctttccatca acccacgatc aggtccctcg cccaccagat atagctgtgc
     1261 gtcttgcgtc tgccgcacat gcgcaaacgc gtgcagaagg tcggcaatgc cgttgcgctc
     1321 gaacatcgct gccacgcaca ccacgttcgg atgctgcaac tccgatggcc gcggcagctg
     1381 ttgcccggta aaacgcgggg aaccgatggt gccgcttgtc accacgctca aggtgtctgc
     1441 cagcacgcca cgttccagca tggcgtcgcc taccgcgtgg ctccccacga tcacgcgatc
     1501 accaaaccgc accagcgaag cgcttttctg gatatcgtga tggacggtgg tcaccagcgc
     1561 gaagcggcgg cgcatgctgc cgaagcgcga gatcaacgcg ccggtcatca tgtgcgcgtg
     1621 cacgatatcg ggattgaagc gctcgatcaa ccggctgaag cctgcaatca tggccggcac
     1681 gcgccagggc tggcgcgact ggtgcagcag cgaatgcgtg acgccatggc gccgcagcaa
     1741 cgactcgaag gcgccccccg ctgaagcgac cgcgacgtcg tgtccggcgc gcgcctgcat
     1801 gcacgccaga tcgaccatag cgttgacggt gccgttgcca ttgcattgcg catgcgtggc
     1861 catgtgaacg attttcatga ctaggtctgg ttcgaggttg agcggcgcct ggggcgccgg
     1921 ggcccttctt tcttcttgct ggtgactgcg gggtacttgt ggctacagct ccttcattca
     1981 atacgggtca atagcgccgc gatcacttca tgtctttacc gatgcagtcc cttggcgagc
     2041 ccacgcgttg cggcgagcgg ccttgctcgt tttcgcaatg tcttcgaaca gcgcgagata
     2101 gcgggctgcc atggtctgcc aggacaacgt cgcggccagc gcctgagccg cctgtcccat
     2161 ttctcgcgta cgcagcgggt cggatgcaat cagcgagatg gcttcggcaa gtgaggtttc
     2221 attgtcggga tcgtccagca cgatgccgca ctcctccgtg accacttccg caccaccggt
     2281 cgtgtgtacg gtaatcaccg gcaacgcaca agcaagcgcc tcgagcagca cgaggctcat
     2341 ggcttcgtaa cgcgacggga acacgaatgc atcggcgcaa cgcatcagcg tgggcatatc
     2401 gcggatcatc ccgacgaaat gcacgcgctc cgccacaccg agggcggccg ccattgccgg
     2461 atacgggctg ttcgccacac ctcccgccac cgcaagatgg acgtttggcg gacacttcac
     2521 gagcgcacgc agcacggtgt ccagg
//
LOCUS       DATGBK010000737         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_124751, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000737 DATGBK010000000
VERSION     DATGBK010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124751"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..844)
                     /locus_tag="VKJ77_10400"
     CDS             complement(17..844)
                     /locus_tag="VKJ77_10400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HMC45721.1"
                     /translation="MQIESSANPDDAVSPSSDAKAQRGINALDSTGELLLALVSAGRP
                     LSLRDLAAAAAMPAAKAFPHLVSLLKIGLLSRDDTGCFDAGPLSMELGLIALQRLSPT
                     RDAEPEIAALAADTGMSVAAATLGPLGPTVIRLEESARPQHVSLRVGTVMSLVNTAIG
                     RVFAAHVSDDVLSGLLPQEPIRLAGLPATSTLPADYRTRLADIRKTGIDHAFDAPVPG
                     IGTLAAPVLDHTGSIRLVIALIGSSGNFDPSPQGEIAQQLLAATQRLSWRFGWISGR"
     gene            complement(847..>1520)
                     /locus_tag="VKJ77_10405"
     CDS             complement(847..>1520)
                     /locus_tag="VKJ77_10405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IclR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HMC45722.1"
                     /translation="AQAHTYLVSLTRLGLVKRDVLTGNYEPGPLSLRLGLMHIEQQPA
                     YRITVPYAAAFAEAIGFSVAICVAGVQGPTIVRYERGGFPLHVNLHVGTVMSLEMTST
                     GRVFCAFFAPEQVSAMARSQMTNRSRPGASDRQLIGESTVNQQWRARLDEIRERGIER
                     GIDVPSPGISSLSVPVFDAEHRMQLALTVIGSSGSIDVAWDGPVARQLLETARRVTNA
                     LANPT"
BASE COUNT          293 a          472 c          488 g          267 t
ORIGIN      
        1 cctagtcgca ctgatatcaa cgaccgctga tccagccaaa gcgccacgac aaacgttgcg
       61 tcgcggcgag cagttgctgc gcgatctccc cttgcgggct gggatcgaag tttcccgacg
      121 agccaatcag cgcaatgaca aggcgaatgc tgccggtgtg atctaacacc ggcgcggcca
      181 gcgtgccgat gcctggaacc ggcgcatcaa acgcgtgatc aatccctgtc ttgcgaatgt
      241 cggcgagacg cgtgcggtag tcagctggaa gggtgctggt tgccggtaag cctgcaagtc
      301 tgatcggttc ctgcggcaac agaccggata gcacgtcgtc agaaacatgg gcggcgaata
      361 cccggccgat cgcggtattg accagcgaca tgacagtgcc gacccgcaag ctgacgtgtt
      421 gcggtcgcgc ggattcctcc aggcgaatca cggtgggtcc aaggggccca agcgtcgcag
      481 ccgcgacgct cattccggtg tcggcggcga gcgctgcgat ttcgggttcg gcatccctcg
      541 tcggcgacag acgctgcaac gcgattaggc caagttccat gctgagcggc ccggcgtcga
      601 agcacccggt gtcgtcgcga ctcagcaacc ctatcttaag caaactcacc aggtgcggaa
      661 aggcctttgc cgccggcatc gcagcggccg cggccagatc tcgcagcgac agcggccggc
      721 cggctgaaac caaggcgagc aacagttcgc ccgtgctgtc gagcgcattt atgccgcgct
      781 gcgctttcgc atcgcttgac ggtgagacgg cgtcgtccgg atttgccgag gattcgattt
      841 gcatgatcaa gtagggttcg cgagcgcatt ggtcacgcgt cgagcggttt ccagcaattg
      901 acgcgcgacg gggccatccc aggcgacgtc gatcgaaccg gacgagccga tgaccgtcag
      961 cgcgagttgc atccgatgtt cggcgtcaaa taccggcacg ctcaggctgc tgatgccggg
     1021 gcttggcaca tcgatgccgc gttcgattcc gcgctcgcga atttcgtcca ggcgcgctcg
     1081 ccattgctga ttgacagtgg attcgccgat caactgccga tcgctcgcgc ccgggcgaga
     1141 ccgattagtc atttggctcc gggccatggc ggagacttgc tcgggcgcga aaaacgcgca
     1201 gaaaacgcgt ccggtcgacg tcatctcgag cgacatcacc gtgccgacgt gcaggttcac
     1261 gtgcagcgga aaaccgccgc gctcgtatcg aacgatggtc ggtccctgca cgcctgcgac
     1321 gcaaatcgcc acgctgaagc cgatagcttc agcgaacgca gcggcgtacg gaaccgtgat
     1381 gcggtacgcg ggctgctgct ctatatgcat cagaccgagg cgcaacgaaa gcgggcccgg
     1441 ctcgtaattg ccggtaagca catcgcgctt gacgaggccc agtcgcgtca gactcacgag
     1501 atacgtgtgg gcttgcgcgg
//
LOCUS       DATGBK010000738         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_55545, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000738 DATGBK010000000
VERSION     DATGBK010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55545"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..793)
                     /locus_tag="VKJ77_10410"
     CDS             complement(<1..793)
                     /locus_tag="VKJ77_10410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004556926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC45723.1"
                     /translation="MPTRSTLNPSSRAPSRVSGDTKTRLLDAAEALFIDAGYEGMSMR
                     LITARADANLAAVNYHFGGKDALIHAMLTRRLDGLNQNRLALLERFQSSLGSQLTCEH
                     ILGAMFIPALQQSRCLEKSGPALLRLLGRAYTDPSPFIRNFLRGIYADVAERFFCAFQ
                     TVLPHLPREELGWRLHFCIGSLSGILAGADTNSLIADFTQGQRLEDSQLIGRLALVMV
                     AALKAPLPVNRPNGACPFASMFAGHEPASNSAASLTADPLSTGPLA"
     gene            complement(1022..>1518)
                     /locus_tag="VKJ77_10415"
     CDS             complement(1022..>1518)
                     /locus_tag="VKJ77_10415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45724.1"
                     /translation="DPHTVALITIVLNIGAICGGLFFGSMSEKIGRRWAIFIAALIAL
                     PVLPLWAFSTGPVALAAGAFLMQISVQGAWGVIPVHLNEISPDEIRATFPGLIYQLGN
                     LLASVNATMQASIAIKNGNNYGLAMALVGGTVAVVIAGLIFFSRERRGIDMTESAKHV
                     GVTS"
BASE COUNT          357 a          412 c          488 g          261 t
ORIGIN      
        1 gcgctaacgg acctgtgctc aaaggatccg ccgtcaagct cgctgcgctg ttcgaggccg
       61 gttcgtgccc ggcgaacatg gaggcgaacg ggcaggcgcc gtttgggcga ttcacgggca
      121 agggcgcttt gagcgcggcc accatgacga gcgcgagacg gccgatcaat tgcgagtcct
      181 ccagacgctg accctgcgtg aaatcggcga tgaggctatt ggtatcggct ccggcgagaa
      241 tgccgctcaa cgagccgatg caaaagtgca gccgccagcc aagttcttcg cgaggcaaat
      301 gcggcagcac agtttgaaac gcgcagaaga agcgttcggc gacatccgca taaattccgc
      361 gcaggaaatt gcgaatgaac ggcgacggat cggtgtaggc gcggccgagg agtcgcagca
      421 acgcaggacc gcttttctca aggcagcggg attgctggag cgccgggatg aacatcgcgc
      481 cgaggatgtg ctcgcaggtg agttgcgaac cgagcgagga ctggaagcgt tcaagcaagg
      541 ccagacggtt ctggttgaga ccgtcgaggc gacgagtgag catcgcgtgg atcagcgcgt
      601 ccttgccgcc gaagtgatag ttcacggcgg ccaggtttgc atcggcgcga gcggtgatga
      661 gccgcatcga catgccttcg taaccggcgt cgatgaagag cgcttcggcg gcgtcgagca
      721 agcgagtctt ggtgtcgccg gatacgcgtg acggcgcgcg actggatggg ttaagcgtgg
      781 aacgggtagg cactggcgtc tccgggacct ttgtagcggt ccacattctg ggaatggtcg
      841 atggtcgagt aaagccttta attaaaacgg gcgttctaat caagataaaa agctttggcg
      901 atatcgacaa gccatttcat ggagcgtgtt ctctaaaaag agaacgatcg tgcaagggga
      961 cgggacgcgc agaaaaaaat ggggacgcga gcgcgtcccc atcgactaaa aatgcttgaa
     1021 gctaacttgt caccccgaca tgcttcgcgg actcggtcat gtcaatgccg cggcgttcgc
     1081 ggctaaagaa aataagcccc gcaatcacca cggcgacggt gccgccgacc agcgccatgg
     1141 caagtccgta gttattgccg ttcttgatcg cgatagacgc ttgcatggtc gcattgaccg
     1201 aagccagcaa attccccaac tgatagataa gtccgggaaa cgtggcgcgg atctcatcgg
     1261 gcgagatctc attcaagtga accgggataa cgccccaggc gccctgaacg gatatctgca
     1321 tcaggaacgc accggcggcc aacgcaacgg ggccagtcga aaatgcccag agcggcaata
     1381 ccggcaacgc gatcaaagcg gcaatgaaaa ttgcccagcg gcgcccgatt ttctccgaca
     1441 tggacccgaa gaacagcccg ccgcagattg ccccgatatt caggacgatg gtaatgagcg
     1501 caacggtgtg cggatcga
//
LOCUS       DATGBK010000739         2646 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_333034, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000739 DATGBK010000000
VERSION     DATGBK010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333034"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            111..1289
                     /locus_tag="VKJ77_10420"
     CDS             111..1289
                     /locus_tag="VKJ77_10420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     ATP-binding protein"
                     /protein_id="HMC45725.1"
                     /translation="MNSHKVVVENLCKVFGTSPKQAIDMLAGGATKEEVFARTGQIVG
                     VHNVSFEVKEGEIFVLMGLSGSGKSTLIRLINRLVEPTAGKVLIDGRDVASVPRSELT
                     ALRRKDMSMVFQSFALMPQRTVLSNAAFGLEVAGIGRKEREKRAMGVLEQVGLAPFAQ
                     KLPAQLSGGMQQRVGLARALAVNPSLMIMDEAFSALDPLKRKEMQNVLLDLQREQQRT
                     IMFVSHDLEEALRIGTRIAIMEGGKVVQIGTPQEIISNPADDYVRAFFEGIDTSRYLT
                     AGDLMQTDVVPLMKHGSQIDASSVSQALNGSADYAFVMDHERKIRGFVCRDAIGQASP
                     EINLIECIQRTTPLDVVVSRVVASRAPLPVVDADGSYCGSVNKTNVLKALTRHRGSHV
                     "
     gene            1282..2184
                     /gene="choW"
                     /locus_tag="VKJ77_10425"
     CDS             1282..2184
                     /gene="choW"
                     /locus_tag="VKJ77_10425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="choline ABC transporter permease subunit"
                     /protein_id="HMC45726.1"
                     /translation="MSEIIPLGSWVDHGVKYLLDHDANTFDAIGKVIESFAALIEHGL
                     QSIPMWLMMAIFVGIGLWRVGWRFALFTLLSLLLIYATGFWDEMVITLGLTLSATLIS
                     LLLGIPLGIWTAKSKAIETIVRPVLDLMQTMPAFVYLIPAAMLFGLGRVPGILSTVIF
                     AMPPAVRLTSLGIKHVNREIVEAGQAFGCTPWQLLYKVQFPNALPSIMTGVNQTIMMA
                     LSMVIIASMVGAGGLGNDVLASIQRLDIGLGFESGLSVVLLAIILDRITESFGRSPGM
                     ARAPLLSGIRSVMRVRRAPAAQQS"
     gene            2261..>2646
                     /locus_tag="VKJ77_10430"
     CDS             2261..>2646
                     /locus_tag="VKJ77_10430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC45727.1"
                     /translation="MKRDAMVPDRIHPENSPLSKLAHFGFLTLPNFSMIAFTSAIEVL
                     RMANYVGRAEHYTWSVITPDGEPARASNGITVKPTKTLAEAGMPDVLIVCAGWHVRDY
                     VDDKVIALLQHVAAQGVPLGGVCTGA"
BASE COUNT          507 a          736 c          856 g          547 t
ORIGIN      
        1 gtgtcgtatt tccacatgtg actgtcggaa atagtcggca acccgcactt ttttctggca
       61 actatgtatg cagagcgcgg acgcacgtcc gccaaccagg agagcgttcg atgaattccc
      121 acaaggtcgt ggtcgaaaac ctgtgcaagg tgttcggcac gagcccgaag caggcgatcg
      181 acatgcttgc cggcggcgca acgaaggaag aagttttcgc ccgcaccgga cagattgtcg
      241 gtgtgcataa cgtgtccttc gaagtgaagg aaggcgagat tttcgtgctg atgggcttgt
      301 cgggttcagg caaatcgaca ctgatccgcc tcatcaaccg gctggtcgaa ccgaccgccg
      361 gcaaggtgct gatcgatggc cgcgacgtgg cttccgtgcc gcgttccgaa ctcacggcgc
      421 tgcgccgcaa agacatgagc atggtgttcc agtcgttcgc gctgatgccg caacgcacgg
      481 tgctctcgaa tgccgcgttc gggctcgaag tggcgggcat tggtcgcaag gaacgtgaga
      541 aacgcgcgat gggcgtgctc gagcaagtgg gtcttgcgcc gttcgcgcag aagctgccgg
      601 cgcagttgtc gggcgggatg cagcagcgcg tggggctcgc gcgggcgctg gccgtgaacc
      661 cgtcgctgat gatcatggac gaggcgttct ccgcgcttga cccgctcaaa cgcaaggaaa
      721 tgcagaacgt gctgctcgat ctgcaacgcg aacagcagcg cacgatcatg ttcgtgtcgc
      781 acgatctgga ggaagcgctg cgcattggta cgcggatcgc gatcatggaa ggcggcaagg
      841 tcgtgcagat cggcacgccg caggaaatca tctcgaaccc tgccgatgac tacgtgcggg
      901 ccttcttcga aggaatcgac accagccgtt acctgaccgc tggcgacctg atgcagaccg
      961 acgtggtgcc gttgatgaaa cacggatcgc agatcgatgc atcgagcgtt tcgcaggcgc
     1021 tcaacggcag cgccgactac gcgttcgtga tggaccacga gcgcaagatt cgcggtttcg
     1081 tgtgccgcga tgcgatcggc caggcatcgc cggaaatcaa tcttatcgaa tgcattcagc
     1141 gcaccacgcc gcttgacgtt gttgtcagcc gggtggtcgc cagccgtgca ccgctgcccg
     1201 tcgtggatgc agatggatcg tattgtggtt cggtcaacaa gacgaatgtt ctcaaggctc
     1261 tgactcggca tcgaggttcc catgtctgaa attatcccgc tcggcagctg ggtcgatcac
     1321 ggtgtcaaat acctgctcga ccatgatgca aacaccttcg acgcaatcgg taaagtcatc
     1381 gagagcttcg cggcgctgat tgaacacggc ctgcagtcca ttccgatgtg gctgatgatg
     1441 gcgatctttg tcggcatcgg cttgtggcgc gtcggctggc gcttcgcact attcacgttg
     1501 ttgtcgttgc tgctgatcta tgccaccggc ttctgggacg agatggtgat cacgctcggc
     1561 ctcacgctgt ccgccacgct gatcagtttg ctgctcggca ttccgcttgg catctggacg
     1621 gcgaagagca aggccatcga gacgattgtg cgtccggtgc tcgacctgat gcagaccatg
     1681 cccgctttcg tgtacctgat tccggcggcc atgctgttcg gtcttggccg cgtgccgggg
     1741 atcttgtcga cggttatctt cgcgatgccg cccgctgtgc gtctgacgtc gcttggtatc
     1801 aagcatgtca accgcgagat tgtggaggcg ggtcaggcat tcggctgcac accgtggcaa
     1861 ctgctgtaca aggtgcagtt tccgaacgcg ctgccgtcca tcatgacggg cgtcaaccag
     1921 accatcatga tggcgctgtc catggtgatc atcgcttcga tggtcggtgc aggcggtctc
     1981 ggcaacgacg tgctggcgag tattcagcgg ctggacatcg ggctggggtt tgagagcggc
     2041 ttgtcggtgg tgctgctcgc gatcattctt gaccgcatca cggaaagctt tggccggtcg
     2101 ccgggtatgg cgcgggcacc gttgttgtcg gggattcgca gcgtgatgcg cgtgcgccgc
     2161 gcaccggctg cacagcaaag ttaagcagca agatgagcac caaaataagc ggttaaatca
     2221 ggcagcgaag tcaggccagg gccccaagga taaaaacccg atgaaacgcg acgcgatggt
     2281 gccggacagg attcatcctg agaattcacc gttatcgaag ctggcgcact tcgggttcct
     2341 gacgctgcct aatttttcga tgatcgcgtt caccagcgcg atcgaagtgt tacgcatggc
     2401 gaactatgtt ggacgggctg agcactacac gtggtcggtg atcacgccgg acggtgaacc
     2461 ggcgcgtgcg agcaacggca ttaccgtgaa gccgacgaaa acgctggccg aagcgggcat
     2521 gccggacgtg ctgatcgtat gcgcgggatg gcatgtgcgt gattacgtgg atgacaaggt
     2581 gatcgcgctg cttcagcatg tcgcggcgca aggcgtgccg cttggcggcg tgtgcacggg
     2641 cgcgta
//
LOCUS       DATGBK010000740         1820 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_194693, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000740 DATGBK010000000
VERSION     DATGBK010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194693"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..695
                     /locus_tag="VKJ77_10435"
     CDS             <1..695
                     /locus_tag="VKJ77_10435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RND transporter"
                     /protein_id="HMC45728.1"
                     /translation="SPSPITQASLPKSMTEGWLAADGHALVEASPKALDGKSRDDDKL
                     LARFANAVQKAEPNAIGGPISVLHSANTIIKAFEQAATWSLIAIAVLLWLTLRRIGDV
                     LRTLIPLLVSAVVTLELCVVFDMPLNFANIIALPLMLGIGVAFKIYFVMAWRSGQTGL
                     LQSSLTHAVMFSAATTATAFGSLWFSHHPGTSSMGRLLVLALFTTLIGAVVFQPVLMG
                     KPRVRPKVADTV"
     gene            764..1654
                     /locus_tag="VKJ77_10440"
     CDS             764..1654
                     /locus_tag="VKJ77_10440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HMC45729.1"
                     /translation="MRMAKTPDAARTLRALSGGVLLAAAFALSGCATGPTAKPGDPLE
                     PMNRQIFKFNDAADKYVARPIATGYVKVTPAPLRTAISSFFSNIGDIGNFANNLLQLK
                     ITDASEDLMRIAINSTLGIGGLLDWASAVGLPKHDQDFGLTLGHYGVPSGPYLVLPLL
                     GPSSVRDSTNWIASYPLNPGTYLSTEASVSMFVVRFVSARADLLGATDILSQAALDKY
                     AFVRDAYTQRRQYQLTGAANAALPDYGDEGGATAAPADGASATAAPVKPGMGGSSSSQ
                     GLPNYADPGAAEPASAPAGK"
BASE COUNT          335 a          563 c          550 g          372 t
ORIGIN      
        1 tgtcaccgtc gccgatcacg caggcgtcgc tgcctaaatc aatgaccgaa ggctggctcg
       61 ccgccgacgg tcacgcactc gtggaagcgt cgcccaaagc gctggacggc aagagccgcg
      121 acgacgacaa gctcctcgcc cgcttcgcga acgccgtgca gaaagccgag ccgaacgcga
      181 tcggcgggcc gatctcggtg ctgcattcgg ccaatacgat catcaaggcg ttcgagcagg
      241 cggcgacgtg gtcgctgatc gccatcgcgg tcctgctgtg gctgactttg cgccgtatag
      301 gcgatgtttt gagaactttg atacctttgc tggtatcggc cgtcgtcacg ctggagttat
      361 gcgtggtgtt cgacatgccg ctgaacttcg cgaacatcat tgcattgccg ttgatgctgg
      421 gcattggcgt ggcgttcaaa atctatttcg tgatggcgtg gcgctccgga caaacaggcc
      481 tgctgcaatc cagcctcacg catgccgtga tgttcagcgc cgcgacgacg gcgacggcgt
      541 tcggcagctt gtggttttcg catcatccgg gcacatcgag catgggcagg ctcctggtcc
      601 tggcgctttt tacgacgtta atcggcgcag tggtatttca gccggttcta atgggaaaac
      661 cccgcgtgcg gccaaaagtg gccgacaccg tttaggccgt tcctttttag accgtccctc
      721 aaacgcacta actacttacc gcacgaccca aggaaaccga cccatgagga tggcaaaaac
      781 gcctgatgcc gcccgcaccc tgcgagcgct ctccggcggc gtgctgctcg ccgctgcttt
      841 cgccctgtct ggttgcgcca ccggtccaac cgccaagccg ggcgacccgc tggaaccgat
      901 gaaccgccag atcttcaagt tcaacgacgc cgccgacaaa tacgtcgccc gcccgattgc
      961 aaccggctac gtgaaggtca caccggcccc gctgcgcacg gcgatcagca gcttcttttc
     1021 gaatattggt gacattggca acttcgcgaa caacctgctg cagttgaaga tcaccgacgc
     1081 gagcgaagac ctgatgcgca tcgccatcaa ctccacgctc ggtattggcg gcttgctcga
     1141 ctgggcctca gctgtcgggc tgccgaaaca cgatcaggac ttcgggctta cgctggggca
     1201 ttacggcgtg ccgtcgggac cgtacctggt gttgccgctg ctcggcccga gttcggtgcg
     1261 cgactcaacg aactggattg cgagctatcc gctcaatccc ggtacttact tgagtacgga
     1321 agcgagcgtg tcgatgtttg tcgtgcggtt cgtgagcgcg cgtgccgatt tgctgggcgc
     1381 aacagatatc ttgtcgcaag ccgcgctgga taaatatgcg ttcgtccgcg atgcctacac
     1441 gcagcgtcga caatatcagc tgacgggcgc ggcgaacgcg gcactgccgg attacggcga
     1501 tgaaggcggt gctaccgcag cgcctgcgga tggcgcaagc gcaacggctg cgccggtgaa
     1561 gccgggcatg ggcgggagca gcagttcgca aggcttgccg aactacgctg atccgggtgc
     1621 ggccgaaccg gcgtcggcac cggctggaaa gtaatttagt tttagctcgc gatacggccg
     1681 ccgtatcgcg agtgctttag ctttataaag accgctcggc cttgcgttgt ttccatcggc
     1741 taacccgcgt cgagcgttcc tcttccaagt cttctacgtc ttccacgcgt tgcggcatcc
     1801 cgagttgagc gcgcagcatt
//
LOCUS       DATGBK010000741         1785 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_240521, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000741 DATGBK010000000
VERSION     DATGBK010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240521"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1148
                     /locus_tag="VKJ77_10445"
     CDS             <1..1148
                     /locus_tag="VKJ77_10445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CbbBc protein"
                     /protein_id="HMC45730.1"
                     /translation="RGNIGRLGAGLCPVRGHSNVQGDRTVGIEEQPTQTFLDRLGATY
                     DFEPPREHGYDVVRSIEAMLAGKLKVFIGLGGNFSIATPDTPRVWQAMRSCDLTVHIT
                     TKLNRSHLIHGHDALILPTLGRTEIDMQNGVAQGVSVEDSMSMVHISYGMNRPASPNL
                     LSEIAIVARMALATLGSAKVDWLAHANDYALIRDGIEKVIPGFENYNERLKHPGGFHL
                     GVASRDRVWNTPSGKAQFLVHGIQFDTPIHRARTVHGERLMTLMTTRSHDQYNTTIYG
                     LDDRYRGVYGQRRVLFANQLDIEMLGFEAGQRVDITSVWDDGVERRADSFLLVAYDIP
                     RGCLGAYYPETNPLVPLSSAADGAGTPTSKSIPVLLCASSEKQQEAA"
     gene            complement(1161..>1785)
                     /locus_tag="VKJ77_10450"
     CDS             complement(1161..>1785)
                     /locus_tag="VKJ77_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012365235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45731.1"
                     /translation="GDVSIACVPTVGVQYLPRIMQEYSARYPNNRIKILDHASSAVAD
                     AVLRREAEFGINIAGAHHPELMTMPLLEDQYVLICHEDHPLAKRRRVAWRQLQPYPLI
                     FAGQVSGNRALLDTALGANGLGLQSFYEVQRSSTAVGLVAERIAAAVVPRLAMQKGAY
                     PNIRAIELVDPVVSRALVLVVRKTARLSPAAQALYDMIKLRAVPPKG"
BASE COUNT          351 a          545 c          549 g          340 t
ORIGIN      
        1 tgcgcggaaa catcggccgg ctgggtgcgg gactgtgccc ggtgcgcggg cattcgaatg
       61 tgcagggaga ccgcacggtc ggtattgaag agcagccgac gcagacgttc ctcgaccggc
      121 tcggcgccac gtacgacttc gaaccgccgc gcgaacatgg ctacgacgtc gtgcgttcaa
      181 tcgaagcgat gctcgccggc aagttgaaag tgttcatcgg gttgggtggc aatttttcga
      241 ttgcgacgcc tgatacgccg cgcgtatggc aagcgatgcg ctcgtgtgac ctgaccgtgc
      301 atatcacgac caagctgaac cgcagccacc tcattcacgg ccacgacgcg ctgatcctgc
      361 cgacgctcgg ccgcactgag attgacatgc agaacggcgt cgcgcaaggc gtgagcgtgg
      421 aagattccat gagcatggtg cacatttcgt atggcatgaa ccgcccggct tcgccgaacc
      481 tgttatcgga gattgcgatc gtcgcgcgca tggcgctggc cacgctcggc agcgcgaagg
      541 ttgactggct cgcgcacgcg aacgactatg cgctgattcg cgacggcatc gagaaagtga
      601 tccccggctt cgagaattac aacgagcggc tcaagcaccc gggcggattt catctgggcg
      661 tggcatcgcg cgaccgtgtg tggaatacgc cgagcggcaa ggcgcagttc ctggtgcacg
      721 gcatccaatt cgatacaccg attcatcgtg cgcggacggt tcatggcgag cgcttgatga
      781 cgctcatgac cacccgttca cacgatcagt acaacacgac aatctatggt ctcgatgacc
      841 gctatcgcgg tgtgtacggg cagcggcgcg tgctgttcgc gaaccagctg gacatcgaga
      901 tgctggggtt cgaagcgggt caacgcgtgg atatcacgag cgtttgggat gacggcgttg
      961 aacgtcgcgc ggacagtttc ctgctggtcg cttatgacat tccacgcggt tgtctgggcg
     1021 cttattatcc ggagacgaat ccgctcgtgc cgctgtcgag cgctgcggat ggtgcgggaa
     1081 cgcctacgtc gaagtccatt cccgtgttgt tgtgtgcctc ctccgagaag cagcaggaag
     1141 cggcttgata ccggagcacg ttaccccttg gggggcacgg cccgcagctt gatcatgtcg
     1201 taaagcgctt gcgcggccgg ggacagccgc gcggtcttgc gaaccaccag caccagcgcc
     1261 cgcgacacca ccggatccac cagttcaatc gcgcggatat tcggatacgc gcctttttgc
     1321 atagcaagcc gcggcaccac cgccgcggca attcgctcag ccaccagccc gactgccgtc
     1381 gaactgcgct ggacttcgta gaacgactgc aagcccagcc cattcgcacc cagcgccgta
     1441 tcgagcaaag cacggttgcc gctgacttgt ccggcgaata tcagcggata cggctgcaat
     1501 tgcctccacg ccacgcgtct gcgtttggcg agcggatgat cctcgtggca gatcagcaca
     1561 tactggtctt caagcagcgg catcgtcatg agttcgggat gatgcgcgcc agcgatattg
     1621 ataccaaact ccgcttcgcg acgcagcact gcatcggcca ccgccgacga cgcgtgatcg
     1681 agaatcttga tccggttatt cggatatcgc gccgaatact cctgcatgat gcgcggcaaa
     1741 tattgcacgc cgaccgtggg cacgcatgca atcgacacat ctccg
//
LOCUS       DATGBK010000742         2784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_217493, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000742 DATGBK010000000
VERSION     DATGBK010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217493"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2088
                     /locus_tag="VKJ77_10455"
     CDS             <1..2088
                     /locus_tag="VKJ77_10455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FdhF/YdeP family oxidoreductase"
                     /protein_id="HMC45732.1"
                     /translation="ENGAKATAWEITTKRATPEFFDHHTVAALEAWSDFELESQGRLT
                     HPMRYDAETDRYLPIPWQQAFDEIGEKLRGFDPKRVVFYASGRASLETSYMYALLARL
                     YGCNNLPDSSNMCHESTSVALPDTIGVPVGTVTLEDFEHTDCLFFFGHNTGTNAPRML
                     HPLQEARKRNAQIITFNPLRERGLVSFANPQSPKEMLSTEQTCISTQYHQVKIGGDIA
                     AITGICKALIEADDKARAANAPRVLDAGFIAEHTHGFDAFADAMRAADWKDIELMSAL
                     TRSALEAAATEYARAKAVIILYGMGITQHREGVLAVQMLTNLMLLGGNIGKKGAGICP
                     IRGHSNVQGQRTVGITEKPALVPMDKLKELYQFEPPQETGLTTVDTCEAVRDGNLDAF
                     IGLGGNFARAIPDHGVMDPAWKQLPLTVQIATKLNRSHIVHGRAAYLLPCIGRIEVDR
                     QASGEQTVTVEDSTACIHASKGMTEPASEHLLSEPAIVAGLAKAILPPNPNVDWDAWV
                     GDYGLVRDAIERTYPEAFKDFNRRMTQPGGFHRPLPAAKREWKTKTGKANFIVPDGFG
                     EDPDMDFDGERTLRLMTTRGDSQFNTTVYSLDDRFRGVYHTRDVLLMNQADMTRLGLI
                     ENDAVTAITVAKDEVLRELGGLRVHAFDIPAGCVMGYYPECNRLIPVSHHAKRSKVPA
                     AKAVPVRLRKMAA"
     gene            2317..2496
                     /locus_tag="VKJ77_10460"
     CDS             2317..2496
                     /locus_tag="VKJ77_10460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45733.1"
                     /translation="MNHVNNLQYTRYDMQSNPIPDPLADPNRDPEADPLSPPSPGHRP
                     EEPQHPDAPPDGHPV"
     gene            complement(2519..>2784)
                     /locus_tag="VKJ77_10465"
     CDS             complement(2519..>2784)
                     /locus_tag="VKJ77_10465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45734.1"
                     /translation="ATTLFFNTMRTGSVLAGVASGFVAATWGYRAVFVFCVLLASTAS
                     VVLFIFNYQRGAKIFFDPTLEPVVQGSAVTTVGAVGEQSETAP"
BASE COUNT          622 a          845 c          844 g          473 t
ORIGIN      
        1 gaaaacggcg caaaagccac cgcctgggaa atcacgacca aacgcgcgac acccgagttc
       61 ttcgaccacc atactgtggc cgcgctggaa gcctggagcg atttcgagct ggaatcgcaa
      121 ggccggctga cccaccccat gcgctacgac gccgagaccg atcgctatct gcccatcccg
      181 tggcaacaag ccttcgatga aatcggcgaa aagctccgtg gcttcgatcc gaaacgcgtg
      241 gtgttctatg cgtcgggtcg cgcatcgctg gaaacctcct acatgtacgc gctgcttgcc
      301 cgtttatatg gttgcaacaa cctgccggac agttcgaaca tgtgccacga gagcacatcg
      361 gtggcgttgc ccgacaccat cggcgtgccg gtcggaacgg tgacactcga ggacttcgaa
      421 cacactgact gcctgttttt cttcggccac aacaccggca cgaacgcccc gcgcatgctg
      481 catccgctgc aagaagcgag aaaacgcaat gcgcagatca tcacgttcaa tccgttgcgc
      541 gagcgcgggc tggtaagttt tgcgaatccg cagtcgccaa aggaaatgct ctcgaccgag
      601 caaacctgca tcagcacgca ataccatcag gtgaagatcg gcggagacat agcggcgatc
      661 acgggcattt gcaaggcgct gatagaagcc gacgataaag cccgggcagc caacgcaccg
      721 cgcgtgctgg acgcgggttt catcgcagaa catacacacg gtttcgatgc cttcgctgac
      781 gcgatgcggg ccgcggactg gaaagatatc gagttgatgt cggcgctgac acgctccgcg
      841 ctcgaagcgg ccgcgaccga atatgcgcgc gcgaaggccg tgatcatctt gtacggcatg
      901 ggcatcacac agcatcggga aggcgtgctt gccgtacaga tgctgacgaa cctgatgctg
      961 cttggcggca atatcggcaa gaagggagcc gggatctgcc cgattcgtgg ccactcgaac
     1021 gtacaggggc agcgcactgt gggcatcacc gaaaaacctg cgctcgtccc catggacaag
     1081 ctcaaagagc tgtatcaatt cgagccgccc caggaaaccg gcctgacgac cgtggatacc
     1141 tgcgaagcgg tcagggacgg caatctcgat gcgtttatcg gactcggcgg caatttcgcg
     1201 cgcgcaattc ccgatcacgg cgtaatggac ccggcgtgga agcaactgcc gcttaccgtg
     1261 cagatcgcaa ccaagcttaa ccgcagccat atcgtgcacg gtcgcgcggc gtatttgctg
     1321 ccgtgcattg gccggatcga ggtggaccgg caggcgagcg gcgagcagac ggtgaccgtg
     1381 gaggacagca cggcgtgcat ccacgcatcg aagggaatga ctgagccggc gagtgaacac
     1441 ttgctgtcgg agccggctat tgtcgcgggg ctggcgaagg cgatcctgcc gccgaacccg
     1501 aatgtcgact gggatgcgtg ggtaggcgat tacgggctgg ttcgtgatgc catcgagcgt
     1561 acctaccctg aggcgttcaa ggatttcaac cggcgcatga cgcagcctgg cggttttcac
     1621 cggccgttgc cggccgcgaa acgcgagtgg aaaacaaaaa ccggcaaggc aaactttatc
     1681 gtgccggatg gtttcggtga ggaccccgat atggacttcg acggcgaacg cacgctgcgc
     1741 ctgatgacca cacgcggcga cagccagttc aatacgaccg tgtactcact cgatgaccgt
     1801 ttccgcggcg tgtatcacac gcgtgacgtg ctgctgatga accaagccga tatgacccgg
     1861 ctgggtttga ttgaaaacga tgcggtcacg gcaatcacgg tcgcgaagga cgaagtactg
     1921 cgcgaattgg gcggtctgcg cgtgcatgcg ttcgacatcc ccgccggctg cgtgatgggc
     1981 tattacccgg agtgcaatcg tctgattcca gtgtcgcatc acgcgaaacg cagcaaggtg
     2041 ccggcggcca aggcggttcc tgtacggcta cggaaaatgg cggcttgagg gaaggctgga
     2101 gctagcttga gggatgtgcc ggtcatgaaa gcggcactcc tttaattgtc accggacggc
     2161 gggacgcaat ccatccggcg tgaaccgttg tccatatggt acccgccggg tttaacgtgc
     2221 acagccagag cgtgcgagcc tgcctttcag tccgcatgcg cctatgctgg agaacacgac
     2281 actcactgtc ggtgacagaa caaaccgagg ccactcatga accacgtgaa caacttgcag
     2341 tacacgagat acgacatgca gagcaacccg atccccgacc cgctcgccga tccaaaccgc
     2401 gacccagagg cagacccgct gtcgccgccg tcgcccgggc atcggccgga ggagccccag
     2461 catcccgacg cgccaccgga cgggcatccg gtctaaatag actcgttatc aaccatcgtt
     2521 atggcgcggt ttccgattgc tcgccaacgg cgccgaccgt cgtgaccgcg ctgccttgga
     2581 caacgggttc cagggtggga tcgaagaaaa tcttcgcgcc gcgttgatag ttgaaaatga
     2641 acaacacaac cgacgcggta gacgccagca gcacgcaaaa cacgaacacg gcccgataac
     2701 cccacgtcgc tgccacgaat ccagatgcca cgcccgccag cacggagccg gtgcgcatgg
     2761 tgttgaaaaa cagcgtggtc gccc
//
LOCUS       DATGBK010000743         3888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_32773, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000743 DATGBK010000000
VERSION     DATGBK010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3888
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32773"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..612)
                     /locus_tag="VKJ77_10470"
     CDS             complement(<1..612)
                     /locus_tag="VKJ77_10470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HMC45735.1"
                     /translation="MSSTIQAFLKPHQHDVGGLMVRRVLPALAARTIGPFIFFDHIGP
                     ATLVPGVGLDVRPHPHIGLATVTYLFEGAIMHRDSVGSVQKISPGDVNWMTAGGGIVH
                     SERTPDEERTAGQNMHGIQTWVALPVADEECAPSFEHHPAATLPQVERNGVKLRVIAG
                     SAFGETAPTTTFSPTLYVAAQFSANSAVTLDTEHEERGVYLLEG"
     gene            834..1124
                     /locus_tag="VKJ77_10475"
     CDS             834..1124
                     /locus_tag="VKJ77_10475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45736.1"
                     /translation="MTRNTLLIAVAAGLFATTSAYAQTSNGNSSNAASMPTASPMQSA
                     DTSDAASAPMKKHHKMRKPANKQSSTGQSANPSKTPAVETGASAATENGQSK"
     gene            1376..2260
                     /locus_tag="VKJ77_10480"
     CDS             1376..2260
                     /locus_tag="VKJ77_10480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HMC45737.1"
                     /translation="MSPKDLLSALIVILAWGVNFVVIKVGLHGVPPMLLGALRFALVA
                     FPAVFFVKRPAIPFRWLFAYGATISFGQFVLLFYAMSVGMPAGLASLVLQAQAFFTLI
                     FAAMILGEGFRGPNVAGLLIAACGLAVIGVQAGHAMTVAGFLLTLAAASMWGMGNVIT
                     KRMGKVDLLSLVVWASLVPPLPFLALSLMLEGPARISASLSGISLTSVLAIVYLAFIA
                     TMLGYTLWGKLLARYPASQVAPFSLLVPIVGLASAALLLDEGLSPMEFVGAVLVMAGL
                     VVNVFGGWFRQRFLSAAR"
     gene            complement(2365..>3888)
                     /locus_tag="VKJ77_10485"
     CDS             complement(2365..>3888)
                     /locus_tag="VKJ77_10485"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007578876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HMC45738.1"
                     /translation="SIESTATASHNWRRRQVLRAGASTIALALLGPKLAYASSVLGVR
                     VWPARDYTRVTIESDQPLQNTQQLLQGPDRLVVDLNGLDLDQELKDLVSKITPNDPQI
                     QSVRIGQYQPHVVRMVFDLKGSVKPQVFTLTPIGSYKYRLVFDLYPAVAPDPLMDLLA
                     QSEHKQQTFDQTNPNPAPPPATLSGPATPPKANAPDNTDEFFQKYAQSDLPRAPSSPA
                     PMAPVPPIPSFPKPRPTVKPAPPTALANQDDSSDSSTTDDYGFANPKSNKSGTTRLLT
                     VAIDPGHGGEDPGAIGSGGTYEKHIALDVAKKLRAKIDAQPNMRAMMTRDADFFVPLN
                     VRVQKARRVGADLFVSIHADAFTTPSARGSSVFALSDHGASSAAARWMANKENSSDSI
                     GGINVTTQDASVNRALFDMSTTAQIRDSMRYGNFVLNEIGDINKLHKGSVEQAGFAVL
                     KAPDIPSILVETAFISNPEEEQRLNDDAYRDKMANAIMKGIKRYFAANPPLAKSRMT"
BASE COUNT          660 a         1124 c         1261 g          843 t
ORIGIN      
        1 gccttccagc aggtagacac cgcgttcctc atgttccgta tcgagcgtca cggcgctgtt
       61 cgccgaaaat tgcgccgcga cgtacagggt gggtgagaac gtggtggtcg gcgctgtttc
      121 accgaaagcg ctgcctgcaa tcacccgcaa cttcacgcca ttgcgctcga cttgcggcag
      181 cgtcgcggcg ggatgatgct caaacgacgg tgcgcactcc tcgtccgcca cgggcagcgc
      241 gacccaggtc tggatgccgt gcatgttttg accggcggtg cgttcctcat cgggcgtgcg
      301 ttccgaatgc acgatgccgc cgccggccgt catccagttc acgtcgccgg gcgagatctt
      361 ctggaccgag ccgacgctgt cgcgatgcat gatcgctccc tcgaagagat acgtaaccgt
      421 cgcgaggcca atgtgcggat gggggcgcac gtccagccct accccaggca cgagcgttgc
      481 aggaccgata tggtcgaaga aaatgaacgg tccgatggtg cgggcagcca gtgcaggcag
      541 tacccgacgc accatgaggc caccgacgtc gtgctgatgc ggcttgagaa acgcttggat
      601 tgtggaagac atagggacgt ccggattgcg tgctcggaac tgcaattcta ctgggcgtcg
      661 tgtggaagca cgcaagcggt atccggtcga taagccattc ggccgatcgt tcaaaccgga
      721 gcatgggtcg ctgacaagct tggcggccgt gtgagccgtg caactttcga tggaccgttt
      781 cgatggaccc ttgcgattga tcttttccgc ctagcctaga caggagcttc acaatgacca
      841 ggaacacgct tttgatcgcc gttgccgccg gcttgtttgc cactacaagt gcctatgccc
      901 aaacgtcgaa tggcaattcg tcgaacgcgg cgtccatgcc caccgcatcg ccgatgcaaa
      961 gtgcagacac atccgacgct gcatccgcgc cgatgaaaaa gcatcacaag atgcgcaagc
     1021 ccgcgaacaa gcagtcgtcg accggccagt cggccaaccc gagcaagacg cctgccgtgg
     1081 agacgggcgc cagtgctgcg acggagaatg gtcaaagcaa gtagcttgga gcgccgcggg
     1141 cgtttcaaga ggtaacgttt caaagcaaag cgctttgcgc cctgaccggc ccaagcgctt
     1201 tttctttggg ttgtacgcgg gatcgcctta tccgaacggg ctatggcgtg agtttgtaca
     1261 acgtatttgc aaaatcgtcc gctacagtgt cgaattgcgt tcgatctgct ttcggggctt
     1321 ccaggctcct gtctgatctt gaaagcagct tcgaataaaa ctcacggaga cggcgatgtc
     1381 gcccaaggat ttgttgtccg cgctgattgt cattctcgcc tggggcgtga atttcgtcgt
     1441 gatcaaggtg ggcctgcacg gcgttccgcc catgctgctt ggcgcgttgc gtttcgcgct
     1501 ggtcgcgttc ccggcggtgt tcttcgtcaa gcgcccggct attccgtttc gctggctgtt
     1561 cgcttatggc gcgaccatct cgttcgggca attcgtgctg cttttctacg caatgtccgt
     1621 tggcatgccc gcgggccttg cgtcgctggt gttgcaggcg caggcgtttt tcacgctgat
     1681 cttcgcggcc atgattctgg gtgaaggctt tcgcgggccg aacgtcgcgg gtttgctgat
     1741 cgcggcgtgc gggctggctg tgatcggcgt tcaggctggc catgccatga cggttgccgg
     1801 tttcctgctc acgctcgcgg cagcgtccat gtggggcatg ggcaacgtca tcacgaagcg
     1861 catgggcaag gtcgacctgt tgtcactcgt ggtgtgggcg agcctggtgc cgccgctgcc
     1921 gttcctcgcg ctttcgctga tgctcgaggg gccagcgcgc atttcggcca gcttgtccgg
     1981 catttcgctc acgtcggttc tggcgatcgt ttatctcgca tttatcgcga caatgctcgg
     2041 ttatacgttg tggggaaagc tgttggcgcg ttatccggcg agtcaggttg cgccgttttc
     2101 gttgctcgtg cctatcgtcg ggctggcttc agcggcattg ctgctggatg aggggctgag
     2161 cccgatggaa ttcgtgggcg cggtgctggt gatggccgga ttggtggtca acgtgttcgg
     2221 cggatggttc aggcaacggt ttttatcggc ggcgcgttag ggtaagggcc gggtaaaggc
     2281 aggataaggc cggcgcggtt tgcccgcgtc ggcctttatc caggtgcagc tcaacgcgag
     2341 cgaacctggc ctgaacccgg tgcttcacgt catccggctc ttggcgagcg gcgggttggc
     2401 cgcaaaatac cgcttgatgc ccttcatgat cgcgttagcc atcttgtcgc gataagcgtc
     2461 gtcgttcaga cgctgctcct cttcggggtt actgataaac gcggtttcca ccaggatcga
     2521 tggaatatcc ggtgctttca ataccgcgaa gccggcttgt tccaccgagc ccttgtgcag
     2581 cttgttgata tcgccaatct cgttcaatac gaaattgcca tagcgcatcg agtcgcgaat
     2641 ctgcgcggtc gtcgacatgt cgaacaacgc ccggttgacg cttgcgtcct gggtcgtcac
     2701 gttgatgccg ccaatggagt ccgacgagtt ttccttgttc gccatccagc gcgcggccgc
     2761 actcgaagca ccgtgatcgg agagagcgaa caccgacgaa ccacgcgccg agggcgtggt
     2821 gaatgcatcg gcgtgaatgg aaacgaacag gtccgcgccc actcgacgcg ccttctggac
     2881 acgcacgtta agcggcacga agaagtcggc gtcgcgcgtc atcatcgcgc gcatgttcgg
     2941 ctgtgcatcg atcttggcgc gcaacttctt cgcgacatcg agggcaatgt gcttctcgta
     3001 cgttccgccg ctgccgatcg cacccggatc ttcgccgccg tggcccgggt cgatcgcgac
     3061 ggtgagcagg cgcgttgtcc cggacttgtt gctcttcggg ttggcgaagc cgtagtcgtc
     3121 ggtggtgctg ctgtcggacg agtcgtcctg gttcgccaag gccgtaggcg gcgctggctt
     3181 gactgtgggc ctgggttttg ggaaggacgg aattggcggg acgggggcca tcggcgcggg
     3241 cgatgacgga gcgcgcggca gatcggactg cgcgtatttc tgaaaaaact cgtccgtgtt
     3301 gtccggcgcg ttcgctttcg gcggcgtggc ggggccgctc agcgtggcgg gcggcggggc
     3361 cggattcggg ttggtctgat cgaaggtttg ttgcttgtgc tcggactggg cgagcaaatc
     3421 catcaacgga tcgggggcaa cggccggata caaatcgaag accagccgat atttatagct
     3481 gccaatgggt gtcagcgtga acacctgcgg cttcacggac cccttcaggt cgaacaccat
     3541 ccgcaccaca tgaggctgat attgcccgat gcgcaccgac tggatctgcg ggtcattcgg
     3601 cgtgatcttc gagacgagat ccttcagttc ctgatcgagg tcgagtccat tcaggtcgac
     3661 cacgagccga tccggaccct gcagcaattg ctgggtattt tgcagcggct gatcggactc
     3721 gatcgtgacg cgcgtgtaat cgcgggcagg ccatacgcgc acgccgagca ccgaactcgc
     3781 gtaggcgagc ttcggtccga gcagcgcgag cgcgatagtc gaagcacccg cgcgcagcac
     3841 ctggcgccgc cgccagttgt gcgaggccgt ggcggtcgat tcgatcga
//
LOCUS       DATGBK010000744         1639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_194723, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000744 DATGBK010000000
VERSION     DATGBK010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194723"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /locus_tag="VKJ77_10490"
     CDS             <1..409
                     /locus_tag="VKJ77_10490"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007576461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HMC45739.1"
                     /translation="PADAIGSVANYLKQHGWESGRPVVWKIAGDTGSQGIAQAAADGQ
                     PEPHWSLAQLTKAGMLMSEPGLNTEAQAGTPVTVVDLPTPGRPTEYTLGLKNFYVLTR
                     YNRSFFYALAVYQLGEAVKAQMAAGNAGVSASQ"
     gene            complement(496..1398)
                     /gene="cysM"
                     /locus_tag="VKJ77_10495"
     CDS             complement(496..1398)
                     /gene="cysM"
                     /locus_tag="VKJ77_10495"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase CysM"
                     /protein_id="HMC45740.1"
                     /translation="MAYKTIEDTIGNTPLVQLVRIPDDEIRSRNNVILGKLEGNNPAG
                     SVKDRPALSMIKKAEERGRIKPGDTLIESTSGNTGIALAMAAAIRGYKMVLLMPEDLS
                     IERRQSMAAYGAEIVLTPVTGGMEYARDLAEQMQRDGKGIILDQFANPDNPLAHYETT
                     GPELWRDTEGRITHFVSAMGTTGTIMGVSQYLKEQNANIEIVGAQPEEGSRIPGIRKW
                     PEAYLPKIFDRSRVDRTESVSQAASEAMARRLASVEGIFCGISAAGACEVALRVARQV
                     ENATIVFVVCDRGDRYLSTGVFPA"
BASE COUNT          301 a          501 c          507 g          330 t
ORIGIN      
        1 tcccgccgat gccatcggca gtgtcgcgaa ctatctgaag cagcacggct gggaatcggg
       61 acggccggtg gtctggaaga ttgccgggga caccggcagc cagggcattg cgcaagccgc
      121 agccgatggt caacccgagc cgcactggtc gctcgcgcag ctcacgaaag ccggcatgct
      181 gatgagcgag ccggggctca acaccgaagc gcaagcgggt acgccggtga cggtcgtcga
      241 cttgccgacg ccgggccgcc cgaccgaata cacgcttggc ctgaagaact tctacgtact
      301 gacgcgctac aaccgcagct tcttctatgc actcgccgtg tatcagcttg gcgaagcggt
      361 gaaagcgcag atggccgcgg gaaatgccgg cgtttcagca tcgcaatgac gtagccgtcg
      421 ggcgcttttg accggcgcac tatgcaaaaa gcccggtaga taccgggctt tttttgttct
      481 gactgaagtt acgtctcagg ccgggaacac acccgtcgac aaataacgat ccccgcgatc
      541 gcaaacgacg aacacgatgg tcgcgttctc gacctggcgc gccacgcgca acgccacttc
      601 gcatgcgccc gccgcggaaa tcccgcaaaa aatgccttcc accgatgcca gccgccgcgc
      661 cattgcttca gatgcagcct gactgacgct ttccgtgcgg tccacgcggc ttcgatcgaa
      721 gattttcggc agataggctt cgggccactt gcggatgccg gggatgcgcg agccttcttc
      781 cggttgcgcc ccaacgatct caatgttcgc gttctgttct ttcagatatt gcgacacgcc
      841 catgatggtg ccggtcgtcc ccatggcgga aacgaaatgc gtgatgcgcc cttcggtgtc
      901 gcgccagagt tccgggccgg ttgtctcgta gtgagcgaga ggattatccg gattcgcgaa
      961 ctgatcgagg atgatgcctt tgccgtcgcg ctgcatttgc tcggcgagat cgcgggcgta
     1021 ttccataccg ccagtgactg gcgtaagcac gatttccgct ccgtaagccg ccatgctctg
     1081 gcgacgttcg atcgacaggt cttccggcat gaggagcacc attttgtagc cgcgaatggc
     1141 ggcggccatg gcgagtgcga taccggtgtt gccgcttgtc gattcaatca gcgtgtcgcc
     1201 aggcttgatg cggccgcgct cttccgcctt cttgatcatc gaaagtgccg gacggtcctt
     1261 cactgaaccc gccgggttgt tgccctcgag cttgccgagg atcacgttgt tgcggctgcg
     1321 gatttcgtcg tccgggatgc ggaccagttg caccagcggc gtattgccaa tggtgtcttc
     1381 gattgtcttg taagccatag cggtcgtggg gttgcagcgg tcgataagct attgattgta
     1441 gcccaggggg tttccgggtg ccgggcggcc ctattggacg aaggggatga ttgccggcgc
     1501 tctggaagcg ctgcaggctg ccagcaaacg aagacgcatc aggtcgaccg gcgcgccgac
     1561 cgatgcgcca taccgcatta ctttttgacg acaactgcgc cagcaaccgg cttagcaccg
     1621 gcaaccgcca ctggcgccc
//
LOCUS       DATGBK010000745         3565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_32778, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000745 DATGBK010000000
VERSION     DATGBK010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3565
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32778"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            135..1133
                     /locus_tag="VKJ77_10500"
     CDS             135..1133
                     /locus_tag="VKJ77_10500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HMC45741.1"
                     /translation="MKKIINQPENFVDEVIDALLLAHPGWIKAVTADRRALVRADAPR
                     QGRVGIVTGGGSGHMPGFLGYVGEGLCGGVAVGNVFSSPSSEQIFEATKAVNGGAGVL
                     YVYGNYGGDVFNFDLASDMAELEGIDIKTVVLTDDVASAPAERSADRRGVAGMVFAFK
                     CAGAAAERGDLLDEVARIAGKANSRSRTMGVGLSPTILPAAGKPTFTLPDGEMEIGIG
                     IHGEPGSHRGKLETADEIADRLTGTILRDLALPKGSRVAILVNGLGATPLEELYVLYR
                     RAAGMLADQGLTIARSYVGEYVTSLEMAGASITVMHVDDELETLLAAPARSPFFRE"
     gene            1165..1791
                     /locus_tag="VKJ77_10505"
     CDS             1165..1791
                     /locus_tag="VKJ77_10505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004371 - glycerone kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HMC45742.1"
                     /translation="MSVTCKELRDVLTRSLSALPAHADELRDLDAALGDGDLGITVSA
                     GSSAVIKALDGLPEAATVADILLSAGKAFSTANPSTFAALTGGGLLAASKVMAGKMSV
                     GKAEAVEIGRAVAGRIAERGKSKVGDKTVLDALIPSLDVLESLTGTAVELLAAMIATA
                     QEQVDATAGLQSQKGRAAWVQERSVGHADPGATAYLRFLVALQAALKP"
     gene            complement(1859..3076)
                     /locus_tag="VKJ77_10510"
     CDS             complement(1859..3076)
                     /locus_tag="VKJ77_10510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004539004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC45743.1"
                     /translation="MKKRSQYIGILSVAGVSCIASPAFAQSSVTLYGIVDTGLVYANN
                     QASLGSTSGGHSVTKLASGIWAGDRFGLKGVEDLGGGTKAIFQLESGFNLDNGAQQYT
                     NAEFGRQAYVGITNASYGTFTAGRQYTSYYALLSPYSPTTWLTGYFGAHPGDIDSLDT
                     DFRENNSLVYTSPTIYGVTMSGSYSMGGVAGSFNAGSTWSVALQYINGPFGIAAGLQR
                     INNSTPGGGAWGTDSTTNSGGQTGVSALTNGYQTAAAQQRVAITGGYAFTPALDISVT
                     YSNVQYVPGINSKFTDEAVFNTFGTVLHYRAATAIDLAAGYSYTRATKANGISSAAQY
                     HQFNLSESYNLSKRTTLYALQAFQVAHGKTLGTSGAGNIINATAALGDGFQSTPSSSA
                     RQFAAGLGIVHRF"
     gene            complement(3161..>3565)
                     /locus_tag="VKJ77_10515"
     CDS             complement(3161..>3565)
                     /locus_tag="VKJ77_10515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HMC45744.1"
                     /translation="NTVKRRVALAKGSPLKILNANAAIAWDAMKAGSAGFNGVFTNFH
                     PDLYQWLRTKSDADPALAEELSTFLVVTAVSEALGYPALAKMYHQRIGTFSSIRCRVI
                     DYDVRERFWALDAVLDKIVAGTEHFRARIAAL"
BASE COUNT          682 a          997 c         1162 g          724 t
ORIGIN      
        1 tgctcgacgc cgtcagccag cgacgcaagc tctgaatccg agccgtaaaa aatgacggct
       61 gaaaccctgc gcgggccgat gaaatcatcg cggaatcaac cggacaaaga ccgcgcttca
      121 aggagacaaa acccgtgaaa aagatcatca atcagcctga gaattttgtc gacgaagtga
      181 tcgacgcatt gctgttggcg caccccggat ggatcaaggc ggtcaccgcg gaccgccgcg
      241 cgctggtgcg cgctgacgcg cccaggcaag gccgcgtcgg cattgtgacc gggggcggct
      301 ccggacatat gccgggcttc ctgggatacg tgggcgaggg tttgtgcggc ggcgtggccg
      361 ttggcaatgt gttttcatcg ccgtcgtccg agcagatctt cgaggccaca aaggcggtga
      421 acggcggcgc gggcgtgctg tatgtgtatg gcaactatgg cggcgatgtc ttcaactttg
      481 accttgcgtc cgacatggca gagctcgaag gcatcgacat caagactgtg gtcctgaccg
      541 acgacgtggc gtctgccccg gctgaacgaa gcgcggacag gcgcggcgtg gccggcatgg
      601 tgttcgcgtt caagtgtgcg ggcgcagcgg cggagcgggg cgatttgctg gacgaagtcg
      661 cacgcatcgc tggcaaggcg aatagccgga gccgcacgat gggtgtcggt ttgtcgccca
      721 ctatcttgcc cgctgccggc aagccgacgt ttacgctacc cgatggcgag atggagattg
      781 gtatcggcat tcatggcgag cccgggtcgc atcgcggcaa gctggaaacg gccgatgaaa
      841 ttgccgaccg gctcaccggt acgatccttc gcgatctcgc gttgccgaag ggctcgcgtg
      901 tcgccatcct ggtgaacgga ctgggcgcga ctccgctgga agagctttat gtgctgtatc
      961 ggcgagcggc tggcatgctc gcggaccagg ggctgacgat cgcgcgatcg tatgtgggcg
     1021 agtatgtgac gagcctggaa atggcggggg catcgatcac ggtgatgcac gtcgacgacg
     1081 aattggaaac gctgctggca gcgccggccc gttcgccgtt ctttcgagaa tgaccggtcg
     1141 ctgaattaat caggagaaca tgcgatgagt gttacttgca aggaactccg ggacgtgctc
     1201 acacgcagct tgagcgcact gcctgcgcac gccgacgaac tacgcgatct cgatgccgcg
     1261 ctgggtgacg gggacctggg catcaccgtg tcggcgggct cttctgcggt catcaaagcg
     1321 ctggatggtt tgccggaagc agcgactgtg gctgatatcc tgctcagcgc cgggaaggcg
     1381 ttttcgaccg cgaatccgtc cacctttgcg gcgttgaccg gtggcggttt attggcggca
     1441 tcgaaggtaa tggctgggaa gatgtcggtc ggaaaggcgg aagcggtgga gatcgggcgt
     1501 gcggtggctg ggcggattgc cgaacgcggc aaaagcaagg tcggcgacaa gaccgttctc
     1561 gatgcgctga ttccaagcct tgatgtactc gagtcgttga cgggcacggc cgttgaattg
     1621 ctcgccgcga tgatcgcgac ggctcaggag caagtcgatg cgactgccgg attgcaatcg
     1681 caaaaggggc gtgcggcttg ggtgcaggag cgcagcgtgg ggcacgcgga cccgggtgcg
     1741 accgcgtact tgcgattcct tgttgcgttg caagcagcgc ttaaaccata gtcatgcaat
     1801 ttggccgctc cagaggtctg ccatccagcc tctgggcgcg gtctggactg ttgcccgatc
     1861 agaaccggtg aacgataccg agtcctgcgg caaactgcct tgccgatgac gacggcgtgc
     1921 tctggaagcc atcgccaagc gctgccgttg cgttgatgat gttgcccgcg ccggacgtgc
     1981 ccagtgtctt gccatgcgct acctggaacg cttgcagtgc atacagcgtt gtgcgcttcg
     2041 aaagattgta ggactcggac agattgaact ggtgatattg agccgcactg ctgatgccat
     2101 ttgccttcgt cgcacgcgta tagctgtagc ccgcggccag atcaatcgcg gtcgctgcgc
     2161 ggtagtgaag cacggtgcca aaggtattga agactgcctc gtcggtgaac ttcgaattga
     2221 tgcccggcac atactggacg ttcgaatacg tcaccgatat atcgagtgcc ggcgtgaacg
     2281 cataaccgcc cgttatagcc acgcgttgct gggcggctgc ggtctgatac ccgttggtca
     2341 gggcggacac gcccgtttgt ccgcctgaat tcgtggttga gtccgtgccc catgcgccgc
     2401 cgcctggcgt cgaattgttg atgcgctgca ggcctgccgc aataccgaac ggtccgttga
     2461 tgtattgcaa tgccacgctc caggtcgagc ccgcattgaa gctgccagct acgccgccca
     2521 tcgaataaga accactcatt gtcacgccgt aaattgtcgg cgacgtgtag acgagcgagt
     2581 tgttttcgcg gaagtcggtg tccagcgagt cgatatcgcc ggggtgagcg ccgaagtagc
     2641 cggtaagcca cgtggtcggg ctatacggcg ataacagcgc atagtaggac gtgtactggc
     2701 ggccggcggt gaacgtgccg tagctggcgt tcgtaatacc gacgtacgcc tggcggccga
     2761 actccgcgtt cgtatattgc tgcgcgccgt tgtcgaggtt aaagcccgac tccaactgga
     2821 agatcgcctt ggtaccgccg ccaagatctt ccacgccctt gaggccgaaa cggtcgccgg
     2881 cccagatgcc cgatgcgagt ttcgttaccg agtggccacc gctggttgaa ccgagcgagg
     2941 cctggttgtt cgcatacacc aggccggtat ccacgatccc atacagcgtg acgctgctct
     3001 gtgcaaaagc cgggcttgca atgcatgaaa cgccagcaac gcttaggatg ccgatatatt
     3061 ggctacgttt tttcattccg tcttctcctt taccattttt tataaaaccg ccttcaggcg
     3121 gtgttgtgag tgtctgtcag gtcaagcgat gggttgcaca ctaaagcgcc gcaatgcgcg
     3181 cgcggaaatg ctcggtaccg gccacgatct tgtcgagtac tgcatccagc gcccagaacc
     3241 gttcgcgcac gtcgtagtcg attacgcggc aacgaattga gctgaaggtg ccaatgcgct
     3301 ggtggtacat cttcgcgagt gcgggatacc cgagtgcttc ggacaccgcc gtgaccacaa
     3361 ggaacgtcga caattcctcg gccagtgccg ggtctgcatc gcttttggta cgcagccact
     3421 gatagaggtc gggatggaag ttggtgaaga cgccgttgaa gccagcggag cctgctttca
     3481 ttgcgtccca tgcaatcgct gcattggcgt tgaggatctt cagcggcgag cctttggcga
     3541 gcgcaacgcg acgcttcacg gtatt
//
LOCUS       DATGBK010000746         1628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_240561, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000746 DATGBK010000000
VERSION     DATGBK010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240561"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..675)
                     /gene="era"
                     /locus_tag="VKJ77_10520"
     CDS             complement(<1..675)
                     /gene="era"
                     /locus_tag="VKJ77_10520"
                     /inference="COORDINATES: protein motif:HMM:NF000908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HMC45745.1"
                     /translation="MSDAPSPGAFRSGFAALVGRPNVGKSTLLNALVGEKLSIVTPRP
                     QTTRHRIVGVCHLPEAQIAFVDTPGLHHGEARALNRAMNRTAGAALVEADLCILVVAA
                     LEWTRGDDMVLERIARSGLPAIAAVNKIDRAYPRERLLPYIADLSKRFVFQVVVPISA
                     LKFEQVEVLRDSIAQHLPVAPALFAAGTLTDRDLPFRIAELIRERLTLELNQEVPYGI
                     AVEVEKM"
     gene            complement(672..1346)
                     /gene="rnc"
                     /locus_tag="VKJ77_10525"
     CDS             complement(672..1346)
                     /gene="rnc"
                     /locus_tag="VKJ77_10525"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HMC45746.1"
                     /translation="MLEKLSYAPRDLSLFSTALTHRSVSAANNERLEFLGDAVLNLLI
                     AEHLYRAFPDASEGDLSRLRSRLVSSEPLAEVAASLGLGDALYLGSGELKTGGFRRKS
                     ILADALEAVCGAVFLDGGLEPARLVVESLFASRIAALPPPSTLKDAKTRLQEYLQSQG
                     LLLPRYVVERIDGEPHAHTFLVSCEVAALALRAEGSGSTRRGAEQAAAEHVLQALELP
                     AGVAKV"
     gene            complement(1396..>1628)
                     /locus_tag="VKJ77_10530"
     CDS             complement(1396..>1628)
                     /locus_tag="VKJ77_10530"
                     /inference="COORDINATES: protein motif:HMM:NF027463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4845 domain-containing protein"
                     /protein_id="HMC45747.1"
                     /translation="QIASELHSDDTPSVTMIRAALGKHLDIQSVTYPDLKDFEIRRDG
                     SVWIVQSTYEESAPLFSNIAMVVAFDKTVQIK"
BASE COUNT          339 a          516 c          479 g          294 t
ORIGIN      
        1 catcttttcc acctcgaccg cgataccgta cggaacctcc tgattaagct caagcgtcag
       61 gcgctcgcgg atgagctcag caatgcgaaa cggcaggtcg cgatcggtca acgtcccggc
      121 cgcgaacagc gcaggcgcta cgggaagatg ctgcgcaatg ctatcccgca acacctcgac
      181 ctgctcgaat ttaagtgcac ttatcggtac aactacttga aatacaaagc gttttgaaag
      241 atccgcgatg tagggcaata agcgctcgcg cgggtaggcg cggtcaatct tattgacggc
      301 tgcgatcgcc ggcagcccgg agcgcgcaat gcgctcgagc accatgtcat cgccacgggt
      361 ccattcgagc gcggcgacga cgagaatgca tagatccgct tccacgagcg ccgcccctgc
      421 ggttctattc atggcgcgat tcaaggcgcg cgcctcgcca tgatgcaaac ccggcgtatc
      481 cacaaaggca atctgcgcct cgggcaaatg acagacgcca acaatccggt ggcgcgtcgt
      541 ctgcggccga ggtgtgacaa tgctcaactt ctccccaacg agcgcattca ggagcgtgga
      601 tttgccgaca tttggtcggc cgacgagcgc ggcgaagcca ctgcgaaaag cacccggtga
      661 tggtgcgtcg ctcacacttt ggccacgccc gcgggcagtt cgagcgcctg cagtacgtgc
      721 tctgcggctg cctgttcggc gccgcggcgg gttgagccac tgccttcggc acgcagagcg
      781 agggcggcga cttcgcagct cactaagaac gtgtgcgcgt gcggctcacc gtcaatgcgc
      841 tcgacgacgt agcgcggcag cagcaaaccc tgcgattgca gatactcctg caggcgggtt
      901 ttggcgtctt tcaatgttga cggcggcgga agggctgcga tccgtgacgc gaacagcgat
      961 tcgacaacga gtcgcgcggg ctcaaggccg ccgtcgagga acaccgcccc gcataccgct
     1021 tccaaagcat ccgcaagaat cgacttgcgc cgaaagccgc cggttttaag ctcgcccgac
     1081 cccaagtaca gggcgtcccc aagccccagc gacgcggcca cttcagccag aggctcgctg
     1141 ctcaccaacc ttgatcgcaa gcgactcaag tcaccttccg aggcgtcggg aaacgcacgg
     1201 tacagatgct cggcgatcaa taaattgagc acggcgtcac ccagaaactc gagtcgctca
     1261 ttgttcgccg cggatacgct gcggtgcgta agagcggtgc tgaagaggct cagatcgcgc
     1321 ggcgcatacg acaatttctc cagcatccag cgcgccggcc agtcagctgc cctcatcgtc
     1381 agcgcccgaa cggcttcact tgatctgcac ggttttgtcg aatgcgacga ccatcgcgat
     1441 attcgagaac aacggtgcag attcctcata ggtcgattgc acgatccata cggagccgtc
     1501 gcggcgaatc tcgaaatcct tcagatccgg ataggtcacg ctttgaatat cgaggtgctt
     1561 gccgagcgcc gcgcggatca tcgtgacgct cggcgtgtca tccgagtgca gctcgcttgc
     1621 gatctgat
//
LOCUS       DATGBK010000747         1614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147679, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000747 DATGBK010000000
VERSION     DATGBK010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147679"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..773
                     /gene="ugpE"
                     /locus_tag="VKJ77_10535"
     CDS             <1..773
                     /gene="ugpE"
                     /locus_tag="VKJ77_10535"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015794 - glycerol-3-phosphate
                     transmembrane transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HMC45748.1"
                     /translation="PVYIAFCAATMSEAEVFRVPLSLVPSTHLFENVANIWTHGSGNA
                     AAPFGHMLLNSLVMALVISIGKIAISMLSAYAIVFFRFPFKNLAFWLIFITLMLPVEV
                     RIFPTVQVVSSMHLSNTYAGLTLPLIASATATFLFRQFFMTLPDELMEAARIDGAGAL
                     RFLWDVVLPLSKTNIAALFVITFIYGWNQYLWPILITSDQSLQTAVVGIKSMIASGDT
                     ATEWHLVMTATLLAMLPPLAVVLTMQRWFVRGLVDSEK"
     gene            787..1095
                     /locus_tag="VKJ77_10540"
     CDS             787..1095
                     /locus_tag="VKJ77_10540"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HMC45749.1"
                     /translation="MILEVAQLPVKAGEEAAFEAAFAEAEKIISAQPGYLSHELVRGA
                     DADNGSHYVLLVRWESVAAHQEGFRNSAGYQTWRELLHKFYEPGVAVAHFATVAGALK
                     "
     gene            1106..>1614
                     /locus_tag="VKJ77_10545"
     CDS             1106..>1614
                     /locus_tag="VKJ77_10545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014898331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45750.1"
                     /translation="MAALSLQGVKKTYDSKQFVLHGIDVEVTDGEFVVMVGPSGCGKS
                     TLLRMVAGLESVSEGKISIGEKVVNTLEPKDRDIAMVFQNYALYPHMSVAQNMAYALK
                     IGGVSKSEIDQRVQNAAKILELEPLLARKPRELSGGQRQRVAMGRAIVREPAVFLFDE
                     PLSNLDAKLR"
BASE COUNT          313 a          449 c          508 g          344 t
ORIGIN      
        1 ttccggtgta catcgctttc tgcgccgcca cgatgagcga agcggaagta ttcagagtgc
       61 cgctttcact ggttccgagc acgcacttgt tcgagaacgt agcgaatatc tggacccacg
      121 gcagcggcaa cgcggcggcg ccgttcggtc atatgttgct gaacagcctg gtcatggcgc
      181 tcgtgatttc gatcggcaag atcgctatct cgatgctgtc ggcctacgcc attgtgttct
      241 tccgcttccc gtttaaaaac ctggccttct ggctaatctt catcacgttg atgctgccgg
      301 tggaagtgcg gatttttccg acggtccagg tcgtttcatc gatgcacctc agcaacacgt
      361 acgccggcct gacgttgccg ctgatcgcat cggcgacggc gacgttcctg ttccgccagt
      421 tcttcatgac gctgcccgat gagttgatgg aggcggcgcg catcgatggc gccggtgcat
      481 tgcggttctt gtgggacgtg gtgctgccgc tgtcgaagac gaacattgcc gcgctgttcg
      541 tgatcacgtt catctatggc tggaatcagt atttgtggcc gatcctgatc accagcgacc
      601 agtcgctgca aacggcggtg gtcggcatca agagcatgat cgcttcagga gacaccgcca
      661 ccgaatggca tctggtcatg accgcgacgc tactggccat gttgccgccg ctcgcggttg
      721 tattgacgat gcaacgctgg ttcgtgcgtg gtctcgtcga ttccgaaaaa taacggaggc
      781 tcattaatga tccttgaagt tgctcaattg ccggtgaagg cgggcgaaga ggccgcattc
      841 gaagcggcgt tcgctgaagc cgaaaaaatc atctcggcgc aaccgggcta tctctcgcac
      901 gaactggtgc gtggcgccga cgcggacaac ggctcgcact acgtgctgct cgtacgctgg
      961 gaatcggtcg cggcgcatca ggaaggtttc cgcaactccg ccggctatca gacgtggcgg
     1021 gaattgctgc ataaattcta tgaaccgggt gtcgcggtcg cgcattttgc gacggtcgcg
     1081 ggcgccctta aatgaaggcg ggtcgatggc tgcactgagc cttcaaggcg tcaagaaaac
     1141 ctacgacagc aagcagttcg tattgcacgg catcgacgtg gaagtgacgg acggcgaatt
     1201 cgtcgtgatg gtcggtccgt ccggctgcgg gaaatcgacg ttgctgcgca tggtcgcggg
     1261 gctggaaagc gtgtccgaag ggaagatttc cattggcgag aaagtggtga acacgctcga
     1321 gccgaaggac cgggacatcg cgatggtgtt ccagaactat gcgctgtatc cgcacatgag
     1381 cgtcgcgcag aacatggcgt acgcgttgaa gatcggcggt gtcagcaaat cggaaatcga
     1441 ccagcgcgtt cagaatgccg cgaagatcct ggaactcgaa ccgttgctcg cacgcaagcc
     1501 gcgcgagttg tcgggcggcc agcggcaacg cgtggcgatg ggccgcgcga tcgtgcgcga
     1561 accggccgtg ttcctgttcg acgaaccgct gtccaatctc gatgccaagc tgcg
//
LOCUS       DATGBK010000748         1547 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_78414, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000748 DATGBK010000000
VERSION     DATGBK010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78414"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..358
                     /locus_tag="VKJ77_10550"
     CDS             <1..358
                     /locus_tag="VKJ77_10550"
                     /inference="COORDINATES: protein motif:HMM:NF019590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HMC45751.1"
                     /translation="DTPHMPNKKENLAAMIIEERDYRIKPGKTQTFVALYEEHGLPIQ
                     KACLGNLLGYFVTEIGELNHVVAWWSFTSLDDRMARRTRMLAMPEWQSYLDRVTDFID
                     VQNTRILNPVHFSPIR"
     gene            387..1328
                     /locus_tag="VKJ77_10555"
     CDS             387..1328
                     /locus_tag="VKJ77_10555"
                     /EC_number="1.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015041294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HMC45752.1"
                     /translation="MNTLKIAIVGAGIIGCSWAMVWARRGHSVVIYDADPATRARALS
                     TLAAYAEDLNRVGMTVPADSLTRVRIAMTLADAVSHADYVQESVPEKLDLKRALFSEL
                     DALAPSGAILGSSTSALGMSRFTAELSGRGRCVIVHPATPPHMMPVVEIVPSPWTDAA
                     VVERIFALMESLGQTPVLVNKEIAGFAMNRMQGALLIEMFRLIEAGVISADHADKLIS
                     DGFGLRWAFLGPLEGVDLNAPGGIADYLHRFGHMFDDMAMEVREPGPVLNPNLIARLD
                     AEMRAKLPLEGIEAKRSWRNRRMAALQKMRRDMQSEA"
     gene            1373..>1547
                     /locus_tag="VKJ77_10560"
     CDS             1373..>1547
                     /locus_tag="VKJ77_10560"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC45753.1"
                     /translation="MPPSLWADTAFPASLFDALAPGDHHADLIVIGAGFTGLSTALHA
                     AERGARVVVLEAAE"
BASE COUNT          290 a          465 c          479 g          313 t
ORIGIN      
        1 tgatacgccg catatgccca acaagaagga gaacctcgct gccatgatca ttgaagaacg
       61 cgactaccgc atcaagcccg gcaagacgca gacctttgtt gcgctctatg aggaacacgg
      121 cctgccgatc cagaaagcct gtctcgggaa tctgctcggg tacttcgtga cggagatcgg
      181 tgaactgaat catgtggtcg cgtggtggag cttcacgagt ctcgacgacc gcatggcgcg
      241 acgcacgcgc atgctcgcca tgccggagtg gcagtcctat ctcgatcgcg tgacggattt
      301 catcgatgtg cagaacacac gcatcctcaa tcccgttcat ttttcaccta tccgataacc
      361 tgtccgatag cgcccggagc atcacaatga atacactgaa gatagcaatc gtgggtgctg
      421 gaatcatcgg ttgctcctgg gcgatggtct gggcgaggcg agggcacagc gtggttatct
      481 acgacgcgga cccagctacg cgtgcacgcg ctctcagtac gctggccgcc tacgcggagg
      541 acctgaatcg tgttggcatg accgtgcctg cggattcgct cacccgtgtg aggattgcga
      601 tgacacttgc cgatgccgtc tcacacgccg attacgtgca ggagtcggtg cccgagaaac
      661 tcgacctcaa gcgcgcgctg ttctctgaac tggatgcact cgcgccgtcc ggcgcgatac
      721 tcggcagttc gacatccgcg ctcggcatgt cgcggttcac ggctgaactg agcggccgcg
      781 ggcgctgcgt gatcgttcat ccggctacgc cgccgcacat gatgccggtt gtcgaaatcg
      841 tgccgagccc gtggaccgat gcggccgtgg ttgaacgcat cttcgcgttg atggagtcgc
      901 tcggccagac gcccgtactc gtgaacaagg aaatcgccgg cttcgcgatg aaccggatgc
      961 agggcgcact gcttatcgag atgttccggc tgatcgaggc gggtgtcatc tccgccgatc
     1021 acgccgataa actcatcagc gacggtttcg gtttgcgctg ggcttttctt ggaccactcg
     1081 aaggcgtgga cctgaacgcg ccgggcggga ttgcagacta tctgcatcgc ttcggccata
     1141 tgttcgacga catggcgatg gaagttcgcg aacccggccc ggtgctgaac ccgaacctga
     1201 tcgcgcggct tgatgcggag atgcgggcca agctgccgct agagggtatt gaggcgaagc
     1261 gctcctggcg caaccgccgc atggctgcgc tgcaaaaaat gcgccgcgac atgcaatcgg
     1321 aagcgtgaac gtggtccatg tcagccttga tccttctctt gatcggtccc gcatgccgcc
     1381 ctcgctatgg gccgacacag cgttcccagc gtcgctattc gatgcccttg ctcccggcga
     1441 ccaccatgcc gatctgatcg tgattggtgc cggtttcacg ggcctgagta cggctctgca
     1501 tgcggcggaa cgcggcgcgc gcgtggttgt gctggaagct gcggaga
//
LOCUS       DATGBK010000749         2092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_171269, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000749 DATGBK010000000
VERSION     DATGBK010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171269"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(483..1628)
                     /locus_tag="VKJ77_10565"
     CDS             complement(483..1628)
                     /locus_tag="VKJ77_10565"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC45754.1"
                     /translation="MTVELGAALIGAVVGGFFVFLAMRSRLSPRVRDISDPLATVVNE
                     ETTTQRLVRTLPFAAFMFDGEGRLTFVNAAAETLFGIFAERAYGRALIEVVPSVDFER
                     QVFEALRGQSSTRDVRVIDGDRERIFGITAQQLEPEGAIAIAVDRTALVSMERVRRDF
                     VSNVSHELRTPLSAIKLMVETVLLSDDDAEARALFLPRVASEVDRMVHLVEDLLELAR
                     SESGRLVLRKETFDLTDVAAAVVNTFAQRASTIEVELDLEAPEAVYVEADRDRLTQVA
                     MNLLDNALRHTPANGNVTIEVGSEGEFAVLRVRDTGIGIPHNDLTQIFERFYVVDRSR
                     SRGHSGTGLGLSIARHLVEAHGGSIVAESVFGQGATFVCRLPLAVQP"
     gene            complement(1632..>2092)
                     /locus_tag="VKJ77_10570"
     CDS             complement(1632..>2092)
                     /locus_tag="VKJ77_10570"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC45755.1"
                     /translation="IMLTAKDQEFDKVLALELGADDYVTKPFSLGEIMARIKARLRRQ
                     DVTIEQQKNEAITVGEMTIDPSRQRLVVRGEEVQLAPKEFRLLHVLMENRGRIVTRQM
                     LLEKVWGYDFEGEHQTISVHIRWLREKTEVDPNNPRHIITVRSRGYMFRE"
BASE COUNT          446 a          653 c          581 g          412 t
ORIGIN      
        1 accgcgcgcg atcgcgctgc atgccggccg ttcggaaggc cccgagatga cggggcttcc
       61 tccttagttt gggcctattt gccgctagag aagccgtgcc gctcgcggcg gtcgggccgt
      121 gcaaatgatg gcaattggga agaccacatg cctgaggcct ggtcagaatc gctcgcaggt
      181 gcaaacagcc cgctgaacag cggcgatcgc gcaatcgacc gaaggaccga aaccacaagc
      241 ggaacccgat gttccggagg attcgtgtag acgcgcattt ctggcgcccc ctttactggt
      301 aaacttggcc cctcgtcccc gtaggaagcg ggagcctgtg gatatcttat cggcaattgc
      361 cccgaaagtc tagaccttcg ctagacaagt acccaaatta actcaatctt ttcaggggaa
      421 agcgccgacc accgcggact tttacgctca aaaagtgctc acttttgcgc aatttgcact
      481 tgctagggct ggacagcgag cggcaagcgg cagacgaacg tcgcgccctg cccaaaaacc
      541 gactcggcga cgatcgagcc cccatgagcc tccaccagat ggcgagcaat tgaaagcccg
      601 aggcccgtgc cgctgtggcc gcgtgaccgc gaccggtcga caacgtagaa gcgctcgaat
      661 atttgcgtga gatcgttgtg cggaatgccg atgccggtgt cgcgcacgcg caacaccgca
      721 aactctcctt cgcttccgac ctcaatggtc acgttgccgt tggccggcgt atggcgcaac
      781 gcgttatcaa gcaaattcat cgcgacttgc gtgagacggt cacgatcggc ctcaacgtaa
      841 actgcttcgg gcgcttcgag atcgagctcc acttcgatcg tgctcgcgcg ctgcgcgaac
      901 gtattaacga ctgcggccgc gacatccgta agatcgaacg tttctttgcg caataccagg
      961 cggcccgatt ccgaacgtgc caactcaagc aaatcttcaa cgagatggac catccggtcg
     1021 acctcgcttg cgacccgcgg caagaacaac gcgcgtgcct cagcatcgtc gtccgatagc
     1081 aacaccgttt ccaccatcag tttgattgcc gaaagcggcg tacgcaattc atgagaaacg
     1141 ttggaaacaa aatcgcggcg cacacgttcc atgctcacca gagccgttcg atcgacggcg
     1201 atcgcaatcg cgccttcggg ctcgagctgc tgcgcggtaa tgccaaatat ccgttcgcga
     1261 tcgccgtcga ttacgcgcac gtcgcgagtc gatgactgcc cccgcaacgc ttcgaacacc
     1321 tgacgctcga aatcgacgga cggcacgacc tcgatcagcg cgcgtccgta cgcgcgctcc
     1381 gcaaagatgc cgaacagcgt ttccgccgcc gcgtttacga acgtcagacg accttcgccg
     1441 tcaaacataa atgccgcgaa cgggagcgta cgcaccagcc gttgcgtcgt cgtctcttca
     1501 ttgaccaccg tcgccaatgg atcggatatg tcgcgcaccc ggggtgaaag tcgcgagcgc
     1561 atcgcgagaa aaacgaagaa gccgcccacg acggcgccga ttagcgcggc gccaagttca
     1621 acggtcaacg attattcccg aaacatatat ccgcgactgc gcaccgtgat aatatgccgc
     1681 ggattattgg ggtcgacttc ggttttctct cgcagccagc gtatgtgcac gctgatcgtc
     1741 tgatgttcgc cctcgaaatc atagccccag actttttcca ataacatctg ccgggtgacg
     1801 atgcggccgc ggttttccat gaggacgtgc aacaggcgaa attctttggg cgcaagttgg
     1861 acttcttcgc cacgcaccac caggcgctgg cgagacggat cgatcgtcat ctcgcccacc
     1921 gtaatggctt cgttcttctg ctgctcgatc gtgacgtctt ggcggcgtaa ccgcgccttg
     1981 atgcgcgcca tgatttcgcc cagcgaaaac ggcttggtca catagtcatc tgcgccgagc
     2041 tcgagtgcga gcactttgtc gaattcctgg tctttggcgg tcagcatgat ga
//
LOCUS       DATGBK010000750         1698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_171270, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000750 DATGBK010000000
VERSION     DATGBK010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171270"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..987
                     /locus_tag="VKJ77_10575"
     CDS             <1..987
                     /locus_tag="VKJ77_10575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018059760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HMC45756.1"
                     /translation="DVMARGRRSLALDLKQPEGRELALHLVAQADALIEGFRPGVMER
                     LGLGPDACMERNPKLVYGRVTGWGQDGPLAMTAGHDVNYIAMSGMLHEIGRSDAPPVP
                     PLNLLGDFGGGGMMLAFGVLCALLEARGSGKGQVIDAAMVEGSALMGAMIYGYKAFGA
                     WSGERGTSMLAGGAHFYNTYACADGKFVSVGAIEPQFYALLLKLCSIDDAAFDNQMDR
                     EQWPSLKTKIAAIFATKSRAAWCELMEGTDVCFAPVLDMDEAPEHVHNRTRRAFIDVE
                     GVTQPGPAPRFSRTVPEVSSPPSSPGQDTDAILRDWNVPSELVERLRGKKVV"
     gene            1108..>1698
                     /locus_tag="VKJ77_10580"
     CDS             1108..>1698
                     /locus_tag="VKJ77_10580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45757.1"
                     /translation="MDLPLPWKSKPVLTEERLNVIARDLRDIYYGVESLLDTEDDCSY
                     GRGTLFFGRSRQRLIRLGTSGEHEWLKLTNAAMDITLEIEGVPFRFFRDDHESPKKKG
                     FWRRNQTDQLFAPTDAEAVVFRFIVQRPLTENDELEIYFVGYNAVEDALCEWRFGDVR
                     VLSSTDDQLPDAVHQDAPQADLLHTDDDISHPHADTG"
BASE COUNT          324 a          444 c          566 g          364 t
ORIGIN      
        1 gacgtgatgg cgcgtgggcg ccgctcgctc gcgctagatc tcaagcaacc ggaagggcgt
       61 gaactggcgc tgcatcttgt tgctcaggcc gatgcgctga tcgaaggttt tcgccctggc
      121 gtgatggagc ggcttggcct cgggcccgat gcatgcatgg agcgcaatcc gaagcttgtg
      181 tacggccgcg tgacgggctg ggggcaggat ggcccgctgg ctatgaccgc agggcacgat
      241 gtgaattaca tcgcgatgag cgggatgctg cacgagattg gccgtagcga tgcaccgccg
      301 gtgccgccgc tgaatctgct cggcgacttt ggcggtggcg gcatgatgct cgcgttcggc
      361 gtgttgtgtg cgctgctgga agcgcgtggg tcgggtaagg gccaggtgat cgatgccgcg
      421 atggtcgaag gctccgcgct aatgggcgcg atgatctacg gctacaaggc gttcggcgca
      481 tggtcgggcg aacgaggcac gagcatgctt gccggcggcg cgcatttcta caatacctac
      541 gcatgcgcgg atggcaaatt cgtgtcggtt ggggcgatcg aaccgcagtt ctatgctttg
      601 ctgttgaagc tctgcagtat tgatgacgca gcgttcgata accagatgga ccgcgagcaa
      661 tggccgtcgc tgaaaacgaa aatagcggcc atcttcgcga cgaaatcgcg agcggcgtgg
      721 tgcgaattga tggaaggcac ggatgtgtgc tttgcgcccg tgctcgatat ggacgaagca
      781 ccggagcatg tgcataaccg gacgcggcgg gcgtttatcg acgtggaggg ggtgacgcag
      841 ccgggcccgg cgccgcgctt tagccgcacg gtgccggagg tgagttcgcc gccgtcgagt
      901 ccggggcagg atactgacgc gattttgcgg gactggaatg tgccgagtga gttggtcgag
      961 aggttgcggg ggaagaaggt ggtttagggg gggctattcg tcgcctttcg ccccagactc
     1021 ttgcgatcga tcccggttga cgaatcccta tatctccgac aatatgcggt tgacgaattc
     1081 gtcaaaaacc gaaaaagaga tggtgttatg gatttgccgc tgccttggaa gtcgaagcct
     1141 gtactcacgg aagaacgtct taacgtgatc gcccgtgatc ttcgcgatat ttattacggc
     1201 gtcgagtcgc tgctcgatac agaagacgac tgttcctatg gacgcgggac cctgtttttc
     1261 ggtcgttctc gacaacggct catccggctg ggtacctcag gtgagcacga gtggctcaag
     1321 ctcaccaacg ctgcgatgga cattacgctg gaaatcgagg gcgttccctt ccggtttttt
     1381 cgcgacgatc atgagtcgcc caaaaagaag ggcttttggc gtcgcaacca gacggaccaa
     1441 ctgttcgcgc ccaccgatgc ggaggcggtg gtctttcggt ttattgttca acgtcctttg
     1501 actgaaaacg acgaactcga gatctatttc gttggttata acgcggtgga agatgcgctg
     1561 tgcgaatggc gatttggcga tgtccgggta ctcagcagca cggacgacca gttgccggat
     1621 gcggttcatc aggacgctcc tcaagccgac cttctgcaca ctgacgacga catttcccac
     1681 ccccacgccg ataccggt
//
LOCUS       DATGBK010000751         2426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147693, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000751 DATGBK010000000
VERSION     DATGBK010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147693"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..441)
                     /locus_tag="VKJ77_10585"
     CDS             complement(<1..441)
                     /locus_tag="VKJ77_10585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020703331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HMC45758.1"
                     /translation="MSDPAATLSILGPAFIAGLMVTAVLVPFGFEVLKRGIVFIDLAV
                     AQIAGVGVIFADFIGWEPQGVAVQISALAAALVTAFLLTWTERRWPEVQEAIIGVVFV
                     LGASGAILLLASNPHGGEHLKDLLVGQILWVSPARLPLEALIYVS"
     gene            complement(438..1388)
                     /locus_tag="VKJ77_10590"
     CDS             complement(438..1388)
                     /locus_tag="VKJ77_10590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020703332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HMC45759.1"
                     /translation="MEKGIAMKRAICRMSRFVLPVAVSLSLTLLLGQPAFAQLKVLAC
                     EPEWGALTQELGGDKVSIYNATTALQDPHHIEARPSLIARARNADLVVCSGSELEVGW
                     IPLLLTQSGNTKIQPGTPGFLETSQFVSRLEIPKVLDRSLGDIHPAGNPHIHLDPRNI
                     AKVAEVLRDRMVRIDSANAEFYKSRTAAFLARWGEAIRRWESQAAPLKGMTIVVHHKD
                     LSYLNEWLGLREIGSLEPKPGIPATTAHLADLVARMQREPAKVIVYSAYNSPQAAQFL
                     SDRTKIPAVMLPFTVGGSDRAKDLFGLFDDTLARLLAVLK"
     gene            complement(1392..>2426)
                     /locus_tag="VKJ77_10595"
     CDS             complement(1392..>2426)
                     /locus_tag="VKJ77_10595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45760.1"
                     /translation="RGFSLGESEIAMSSNADHYFRGTLIASLQPDDRIGVEEANIQSL
                     GLSNGFTLKAGRFFSSVGYQNEIHAHAWDFTDAPLANKVFLGNQLADDGLQIKWIAPT
                     DTYVELGAEAGRGRSFPGSNRDKNGAGASNLFARLGGDIGVGTAWLVGLSRLSTTAQN
                     RNYDDLDSTGTTVNNSFSGNSGLWALDGVLKWAPNGNSTTNNFKLQGEYFRRNEDGNL
                     TFNTANAPGAAGINQTGALNSAQSGWYAQGVYQFMPMWRVGYRYDRLSSGTVKVGLVD
                     SGALTAADFPIFTPYNATRNTLMFDFSPSEFSRLRLQFASDKSRLGATDNEVFLQYIV
                     SLGAHGAHKF"
BASE COUNT          469 a          763 c          724 g          470 t
ORIGIN      
        1 cgacacatag atcagggctt ccagcggcag cctggccgga ctcacccaca gaatctgacc
       61 cacaagcaga tccttgagat gctccccacc gtggggattg ctggcgagca acaggatggc
      121 gccgctggcg ccgagaacga acaccacacc gatgatcgcc tcctgcactt cgggccagcg
      181 ccgctcggtc caggtgagca ggaacgctgt gaccagcgcg gcggcgaggg ctgaaatctg
      241 caccgccacg ccctgcggct cccaaccgat gaaatctgcg aaaataacac ccacgcccgc
      301 gatctgtgcc accgcaaggt cgatgaacac gatgccgcgc ttgagcacct cgaagccgaa
      361 tggaaccagg accgccgtga ccattaatcc ggcgatgaac gccggcccga gtatcgacag
      421 ggtcgccgcc ggatcgctca tttcagcacc gccagcagcc gcgccagcgt gtcgtcgaac
      481 agcccgaaca gatctttcgc cctgtcgctt cccccaacgg tgaacggaag catgacggcg
      541 ggtattttgg tgcggtcgga caggaactgc gctgcctgag ggctgttgta agcagaatag
      601 acgatgactt tggccggctc gcgctgcatg cgcgcgacca gatcagccaa atgcgcagtt
      661 gtcgccggaa tgcccggctt gggctccagg ctgccgatct cgcgcaagcc cagccactcg
      721 ttcagataag acaggtcttt gtgatgcaca actatggtca tccccttgag cggcgcggcc
      781 tggctttccc agcgccgtat cgcctcgccc cagcgtgcaa ggaatgccgc cgtgcgcgat
      841 ttgtagaatt ccgcgttggc ggaatcgatc cgtaccatcc tgtccctcag tacctccgcg
      901 actttggcga tattgcgcgg gtcgaggtga atatgcgggt tgccggcggg atggatatct
      961 ccaagcgaac gatccaggac cttgggaatt tccagcctgg aaacgaattg cgaagtctcc
     1021 aggaatccgg gcgtccccgg ctgaattttg gtgttccccg attgcgtcag caacagcggt
     1081 atccagccga cctccagttc cgagcccgag cacactacca agtcggcatt gcgcgcccgc
     1141 gcgatcaggc tcggccttgc ctcgatatga tggggatcct gcaaggcagt cgtggcgttg
     1201 taaatggaaa ctttgtcgcc tccaagttcc tgcgtcaagg cgccccattc cggctcgcaa
     1261 gcgagcactt tgagttgcgc gaacgccggt tgccccagca acagcgtaag cgataacgac
     1321 accgccactg gcaagacgaa tcggctcatt ctgcaaattg cccttttcat tgcaattccc
     1381 ttttccatat ctcagaactt gtgcgcgccg tgcgcgccca ggctcacgat atattgcagg
     1441 aacacctcgt tgtcggtcgc gcccagccgc gatttgtcgc tcgcgaactg caggcgcagg
     1501 cggctgaatt cgctcgggct gaagtcgaac atcagcgtgt tgcgcgtcgc gttatacgga
     1561 gtgaagatcg ggaaatcggc ggcagtaagc gcgccgctgt ccaccaaacc caccttcacc
     1621 gtacccgagc tgagccggtc gtagcgatag ccgacgcgcc acatcggcat gaactggtag
     1681 acaccctgcg cgtaccagcc ggactgtgcc gagttcaggg cgccggtctg gttgatacca
     1741 gccgctccgg gggcattggc cgtgttaaaa gtgagattgc cgtcctcgtt gcgccggaaa
     1801 tactcgccct gcagcttgaa attgtttgtc gtcgagttgc cgttgggtgc ccatttcagg
     1861 accccgtcca acgcccacaa gccgctattg ccgctgaagc tgttgttcac cgtggtgccg
     1921 gtggaatcga gatcgtcgta atttcggttt tgcgccgtcg tcgacaggcg cgacaggccg
     1981 acaagccacg ccgtgccgac gccgatgtcg ccgcccaggc gcgcgaacag attgctcgcg
     2041 ccagctccgt tcttgtcgcg attgctgccg ggaaagctgc ggccgcggcc ggcttcggca
     2101 cccagttcga cgtaggtgtc ggtcggcgcg atccatttga tctgcaagcc gtcgtcggct
     2161 agctgattgc cgaggaatac tttgttcgcc agtggcgcgt cggtgaaatc ccaggcgtga
     2221 gcgtggattt cgttctgata gccgacgctg gaaaaaaacc gtcccgcctt gagcgtgaaa
     2281 ccattggaca ggccgagaga ctggatattg gcctcctcga cgccaattct gtcgtccggt
     2341 tgcagcgagg cgatcagcgt gccgcggaag tagtggtccg cattggaact catcgcgatc
     2401 tcggactcgc ccaggctgaa gccgcg
//
LOCUS       DATGBK010000752         3568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_194747, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000752 DATGBK010000000
VERSION     DATGBK010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3568
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194747"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..342
                     /locus_tag="VKJ77_10600"
     CDS             <1..342
                     /locus_tag="VKJ77_10600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020200744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HMC45761.1"
                     /translation="PGALSQSIDKLVAFASEGADCLYAPGVVDKADIAVMVRAVAPKP
                     LNVLMMRPGLSVAELTDLGVRRISVGGGLARVAWQAMLTAAEQMKTGSFDGLAGAASG
                     KQLNDVFGGFA"
     gene            802..2682
                     /locus_tag="VKJ77_10605"
     CDS             802..2682
                     /locus_tag="VKJ77_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45762.1"
                     /translation="MAYTKKLDFGGRAFKDVLGFTVAHWGKQPWRIVAIVALALLSAL
                     ADVLTPLYAGRLVDALAAGAAGKELAWHAATTAFGILACLGLAGTLLRQLVFMNIIVL
                     TLRMMSEIAANAFHRVQRFSADWHGNSFAGSTVRKITRGMWALDLLNDTLLIALLPSL
                     VMLVGATVLLGMHWAVMGVVVGLGSLLYIGVTVGLSLGFVAPAARLGNAWDTRMGGAL
                     ADAVSCNTVVKAFGAETREEARLARVIRKWRHRTRRTWARGTINGGVQGGMLVVMQAA
                     ILGAALLLWEADKASVGDITFTLTMFFMLQGYLREVGMHVRNLQRSVNDMEELVSLEA
                     QPLGVEDKPDAGPIAIREGEIRFEHVTFSYDGHAKPLYVDFSVRIAPGERVGLIGHSG
                     SGKTTLIKLIQRLYDISGGRIMIDGQNIADVSQASLRGQIAIVQQEPVLFHRSLAENI
                     AYARPGATRAEIERAARQASAHDFIAALPQGYETLVGERGIKLSGGERQRVAIARAFL
                     ADAPILILDEATSSLDSESEVLIQQAMERLMVGRTTVVVAHRLSTVRALDRLLVLDKG
                     RIAEEGSHEKLIQLHNGLYRRLFERQALGLTTDRAEPMTVPKTGLPESGYVSDPTMTT
                     GR"
     gene            3119..3493
                     /locus_tag="VKJ77_10610"
     CDS             3119..3493
                     /locus_tag="VKJ77_10610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45763.1"
                     /translation="MYQTLLVEAVHDSGRQAVRFDIGSNAAILDVDDVDLLIERLGQI
                     RSALSPALPHEPSRTHNYVIEIDPCWYLDKNPLFDGVVLLLRHTGLGWAGFAIPQSSL
                     ERLQDAIVKPVPQSFEVSQIPS"
BASE COUNT          663 a         1039 c         1113 g          753 t
ORIGIN      
        1 ccgggcgcgc tcagccagtc catcgacaaa ctcgtggcct tcgcgtccga aggtgcggac
       61 tgcttatacg cgccgggcgt ggtcgacaag gccgatatag ccgtcatggt tcgcgccgtg
      121 gcgcccaagc cgctcaacgt actgatgatg cggcccgggc tgagcgtcgc cgaactgact
      181 gaccttggcg tgcgtcgaat cagcgtcggc ggagggttgg cacgagtcgc gtggcaggcg
      241 atgctgacgg ccgccgaaca aatgaagacc ggttcgttcg atggcctcgc cggcgccgca
      301 tcgggcaagc aattgaacga tgttttcggc ggattcgcct gagtctgagg gccaggcgcg
      361 agcctggtct tttcatcaat gtccctgcgt tgaagggacg ttcaagcgtc ctgattgatc
      421 gcgcggcggc tatgcagtgc tatgcggcag tcgctcgaac tgtatcggct cgacaacatg
      481 tgcgcggccg aaaggggttg gcaagcgcca taagcgcctg ataatattgc gacgtggatg
      541 gccgcccggt cccacgtcac tcaagcttca ttcctcaaaa tttctcaaag ggaggcgaaa
      601 agatgctcac attcaatgtc gccgtccctt actcggtgcg ccggccagtt taggtcgccg
      661 tcagcgcggg cacagcagcc tgcgcgattt ccagacagtt tgttgttagt tcgcccgctc
      721 atgcaggcgt gctccggctg tcgctctcat tttttttcga ccggatagcc tcgtcgcgct
      781 tggcgcaacg ggctgtggca aatggcttac acaaaaaaac tcgacttcgg cggacgggcg
      841 ttcaaagacg ttctcggttt cactgttgct cactggggca aacaaccgtg gcgcatcgta
      901 gccattgttg cgctcgcgct gctctcggca ctggccgacg tcctcacgcc gctctacgca
      961 ggccggctcg tggatgcgct cgccgccggc gcggccggca aggaactggc atggcacgcg
     1021 gccacaaccg cgttcggcat cctggcttgc cttgggttgg caggcacgct gttgcgtcag
     1081 ctcgttttca tgaacatcat cgtgttgacg cttaggatga tgagcgaaat tgccgccaac
     1141 gcgtttcatc gcgtgcaacg gttttcggct gactggcacg gcaacagctt cgccggttcg
     1201 accgtgcgca agatcacgcg cggcatgtgg gcgctcgact tgctcaacga cacgttgctc
     1261 atcgccctgc tcccctcact ggtgatgctg gtcggcgcaa ccgtgctgct cggcatgcac
     1321 tgggccgtca tgggcgtggt cgtggggctc ggatcgctgc tctatattgg ggtgacggtc
     1381 ggcctgtcgc tcggcttcgt cgcgccggct gcccgtctgg gcaacgcatg ggacacccgc
     1441 atgggcggcg cgctggcaga cgcggtgagc tgcaataccg tggtcaaggc cttcggtgcg
     1501 gaaactcgcg aggaagcgcg gcttgcccgc gtgattcgca agtggcgtca ccggacgcgg
     1561 cgcacgtggg cgcgcggcac gatcaacggc ggtgtgcaag gcggcatgct ggtggtcatg
     1621 caggcggcaa tcctgggtgc tgcgttgttg ctgtgggaag ccgacaaggc cagcgtgggc
     1681 gacatcacgt tcacgctgac gatgttcttc atgttgcagg gttatctgcg cgaagtcggc
     1741 atgcatgtgc gcaatctgca gcgttcggtc aacgacatgg aagaactggt atcgcttgaa
     1801 gcacagcctc tcggcgttga agacaagccc gacgctggtc ctatcgcgat ccgtgaaggc
     1861 gagatccgct tcgagcatgt gaccttcagc tacgacggcc acgcgaagcc gctttatgtt
     1921 gacttctctg tgcggatcgc gccgggagaa cgtgtggggt tgatcgggca ctcggggtcc
     1981 ggcaagacca cattgatcaa gctaatccag cggctgtacg acatctccgg cggcaggatc
     2041 atgatcgacg ggcagaatat tgccgatgtc agccaggcgt cgttgcgcgg ccagatcgcg
     2101 atcgtccagc aagagccggt gttgttccac cgctcacttg cggagaacat tgcgtatgcc
     2161 cggccgggcg ctacccgtgc ggaaatcgag cgagccgcaa ggcaggccag cgcccacgac
     2221 ttcatcgcgg cgttgcctca gggttatgaa acgctcgtgg gtgagcgcgg cataaagttg
     2281 tcgggcggcg aacgccagcg tgtggcgatt gcccgggcgt tcctcgcgga tgcgcccatc
     2341 ctgatcctgg acgaagcaac gtcgagcctc gacagcgaga gcgaagtgct gatccagcag
     2401 gcaatggaac ggctgatggt cggtcgcact accgtggtgg ttgctcaccg gctttcaacg
     2461 gtgcgggcgc tggacaggct gctggtgctc gacaaaggca ggattgcgga ggaaggcagc
     2521 catgagaagc tgatccagct ccacaacggc ttgtaccggc ggttgttcga acggcaggcg
     2581 ctcggcttga cgaccgatcg tgcagaacca atgaccgtgc cgaaaaccgg cctccctgaa
     2641 agcggttatg tcagcgatcc tacgatgacg accgggagat gatgcgacgg tccgggtaga
     2701 ccccggaccg tcgcatcgaa gtccgggatc gccaaactct tgatcccgca ctctcgtgat
     2761 ttcaaacaac gcgaattgtt gctttcgttt tgctgtcacg aaaaaccaga tctgctcagc
     2821 gtccgtattg gtgaagcgcc gctacactgc tggaccgcat tcggacgtgc tgcgaaaacg
     2881 ccacgccgag aatcgtcatt tttttcagca acttcgctgc cacttacttc gtattactat
     2941 gtattccaat gtgccactcc tctgttcgtt gcccggcatg cgatctgcag cgactgccgg
     3001 agtgcctacg atccggtcaa atctaaaaaa aaattcatgc ttcgatagcg ttgtttcaga
     3061 cttcacgact cccggaattc cataatgaat ggaccgatta cacattggga gtttcgcgat
     3121 gtaccaaaca ctattagtcg aggcggtcca cgattccggg cgtcaggcag tacgcttcga
     3181 tattggatcg aacgcggcaa tcctggatgt cgacgacgtc gacttgttga ttgaacgtct
     3241 cggtcagatc cgttcggcgc tgtcgccggc cttgccgcac gaaccgtcgc gcacgcataa
     3301 ctatgtgatc gaaattgatc cgtgctggta tctcgacaag aatccgctgt tcgacggcgt
     3361 cgtgctgctg ttgcgtcata ccgggctggg ttgggctggg tttgcgattc ctcaatccag
     3421 cctcgagcgc ctgcaggacg ccattgtcaa accagtgccg caatcgtttg aagtgagcca
     3481 gattccgagt tgatcatgcg gccaccgccg catctgtcgt gcgtgtgctg atccgcccac
     3541 taacaacgcg ttgaaggtga tgtggcac
//
LOCUS       DATGBK010000753         2028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_333135, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000753 DATGBK010000000
VERSION     DATGBK010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333135"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..>2028)
                     /locus_tag="VKJ77_10615"
     CDS             complement(138..>2028)
                     /locus_tag="VKJ77_10615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006401445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HMC45764.1"
                     /translation="TVAQSETAAVARKSAHWPLALACAAAVASETASFAAFPGWIAAS
                     LAVLAIIAGGLGTYKKGWVAIRNGNLNINALMSIAVTGGLFLGQWPEAAMVMVLFSLA
                     ELIEAKSLDRARNAVQKLMQLAPERATVQQPNGTWHEVDAKSVLINSIVRLKPGERIG
                     LDGKVSAGRTTVNQAPITGESLPVDKAPGDTVFAGTINGSGSIEYRVTAIAGDTTLAR
                     IIHAVSEAQGSKAPTQRFVDQFARIYTPVVFALAVAVAVLPPLLAGGGWHDWIYKALV
                     LLVIACPCALVISTPVTIVSGLTAAARKGILIKGGSYLELGRKLTWLALDKTGTITHG
                     TPAQTHVETVADIDTNRCQQLAASLAGRSDHPVSQALARAANADNIAHLPVDEFEALP
                     GRGVQGTIGGKPYSLGNHRLVEELGRCSATLETRLDTLEREGKTVVLLIGEAGVLALF
                     AVADTIKETSRAAIANLHALGVRTVMLSGDNSHTAAAIATAVGIDEARGDQLSEDKLA
                     AVAELAADGAVVGMVGDGINDAPALARADIGFAMGAMGADTAIETADVALMDDDLRKI
                     PAFIRLSKATHAVLIQNIVLALGIKAVFFVLALTGAGTLWMAVLADVGASLLVVANGL
                     RLLRR"
BASE COUNT          354 a          630 c          658 g          386 t
ORIGIN      
        1 aggaatgaaa gcacgtgagc ttgaatgtcg gagcgggtcg aggccaatgg cgcggggcaa
       61 ggatatcatc ggcgaggggc cgcggggcag tgctccggcg tatgcctgca tacggatttg
      121 cctggggcgc ccgcgggtta tcggcgtaac aggcgaagtc cgtttgcaac gaccagcaag
      181 cttgccccta cgtcggcgag aacggccatc cacaaggtcc ccgcgcccgt cagcgcaagc
      241 acgaaaaata ccgccttgat cccaagcgcc aacacgatgt tttgaatcaa caccgcatgc
      301 gtcgccttcg agagccggat gaaagccggg atcttgcgaa ggtcgtcgtc catcaacgcg
      361 acgtcggcgg tttcgatggc ggtgtccgcg cccattgcgc ccatcgcaaa gccgatgtcg
      421 gcacgggcga gggccggggc gtcgttgatc ccatcgccga ccatgcctac taccgcgccg
      481 tccgccgcta gttctgctac agccgcgagc ttgtcctcgg aaagctgatc gccacgggct
      541 tcatcgatac ccacggctgt cgctatggcc gccgccgtat gcgaattgtc gccgctcagc
      601 atcacggtgc gaacgccgag cgcatgcagg ttggcgatcg cggcgcggct cgtttccttg
      661 atcgtgtccg cgacggcgaa caacgcgagc acgcctgctt cgcctatcaa caggacgacg
      721 gttttaccct cgcgttccag ggtgtcgagc cgggtttcaa gggttgcgga acaacgcccg
      781 agctcttcga ccaggcgatg attgccaagc gagtagggtt tgccgccgat ggttccttgc
      841 acgccgcgtc cgggcaatgc ctcgaattca tcgacgggta aatgcgcgat gttgtccgcg
      901 ttggcggcac gtgccagcgc ttgcgacacg gggtgatccg aacggccggc gaggctggct
      961 gcaagctgct ggcatcggtt ggtgtcgata tcggccacgg tttctacgtg ggtttgagcc
     1021 ggcgttccgt gtgtgatcgt gccggtcttg tcgagcgcga gccacgtcag cttgcgaccc
     1081 agttcgaggt acgaaccacc tttgatcaga atgccctttc gcgccgccgc agtgagacca
     1141 ctgacgatag tcacaggcgt cgagatcacg agcgcgcacg ggcaagcaat caccagcagc
     1201 accagcgcct tgtagatcca gtcgtgccaa ccgccgccgg ccaggagcgg cggcaggact
     1261 gcgacagcca ccgcgagcgc aaacacaacc ggcgtataga tgcgcgcgaa ctggtcgacg
     1321 aagcgttgcg tcggcgcctt cgaaccttgc gcctccgaca ccgcgtgaat gatgcgggcg
     1381 agcgttgtat cgccggcgat tgccgtcacg cgatattcga tcgaaccgga tccgttgatg
     1441 gtgccagcaa acacggtgtc gcccggcgct ttgtcgaccg gcaggctttc gcccgtgatg
     1501 ggtgcctggt tcaccgtggt gcgcccggcg ctcactttgc cgtcgagtcc gatccgttcg
     1561 ccgggtttga ggcgcacgat cgagtttatt aataccgatt tcgcgtctac ctcatgccat
     1621 gtgccgttgg gttgctggac ggtcgcgcgc tcgggcgcga gctgcatcag cttctgaacg
     1681 gcgttgcgcg cgcggtcgag cgacttcgct tcgatcagtt cggcaaggct gaagaggacc
     1741 atgaccatgg ctgcctcggg ccactggccg aggaatagcc cacccgtgac ggcgatgctc
     1801 atgagcgcgt tgatgttgag attgccgttg cggatcgcga cccagccctt tttgtaggtg
     1861 ccaaggccgc ctgcgatgat cgcgagtacg gcaagcgatg ccgcgatcca gccgggaaac
     1921 gccgcaaagc ttgctgtttc cgatgcaacc gccgccgcgc aagccagtgc gagcggccag
     1981 tgagcgcttt tcctggcgac ggctgcggtt tcgctttgcg cgaccgtt
//
LOCUS       DATGBK010000754         1791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_309992, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000754 DATGBK010000000
VERSION     DATGBK010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309992"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /locus_tag="VKJ77_10620"
     CDS             complement(<1..788)
                     /locus_tag="VKJ77_10620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011001819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45765.1"
                     /translation="MSGWLVRRIAQAAFVVLLMTLIVFIGLHAIGNPIDILIGQDVDQ
                     VDRARIIAQLGLDQPLWKQYLAFLAGAMHGDLGNSFVYNEPAIRLILQRLPATLELAV
                     SALLLALVIGIPLGLFAGLHPRNPLSKMLMTGSIVGFSLPTFWVGLMLIMLFSVKLGW
                     LPASGRGATASLFGVQWSWLTLDGLRHLILPALNLSLFKVSLVLRLTSAGVREVMPME
                     HVRFARAKGLSPTRVVLVHILRNTLIPLVTVIGLEFGSTIAFAVV"
     gene            complement(785..>1791)
                     /locus_tag="VKJ77_10625"
     CDS             complement(785..>1791)
                     /locus_tag="VKJ77_10625"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013212193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HMC45766.1"
                     /translation="TVEAVTPRADGLVVLSIRTFDRRFEVYARRVVLATGRDGLGGPA
                     LPGFVEGLPRSRWAHSSDTTDYTTLTGKRVAVVGGGSSAMDSAATALEAGAASVDLLI
                     RRSDLPRVNKGKGAGNPGLTHGHQSLPDEWKWKIRHYINTVQVPPPRGSTLRVSRHPN
                     ARFNLGCPVLSVESTESGLSIHTPKGTFAADFLVVSTGFKVDWSARPEFAAFSAYIRT
                     WADRYTPPPGDEDAELSDSPDVGPAFEFLEKSPGDCPGLSRIHCFCYPASLSQGAVSG
                     DIPAISTGAKRLAQGLASLLYSEDVAQHYAALEAYAEPELYGDEWQPAEAPPQYAEDQ
                     "
BASE COUNT          388 a          544 c          565 g          294 t
ORIGIN      
        1 acgaccgcga acgcgatggt cgaaccgaac tccaggccga tcaccgtgac aagcggaatc
       61 agcgtattgc gcaggatatg aacgagcacc acgcgcgtgg gcgacaaacc cttggcacga
      121 gcgaaacgta cgtgttccat cggcatcact tcacgcacgc cggcactcgt caggcgcaag
      181 acaagcgaca ccttgaatag cgacaggttc agcgcgggca ggatcaggtg gcgcaggccg
      241 tcgagcgtga gccacgacca ctgcacgccg aacaggctcg cagtcgcgcc gcggccgcta
      301 gcgggcagcc agccgagctt cacgctgaac aacatgatga gcatcagacc gacccagaat
      361 gtcggtagcg agaagccgac aatactgccc gtcatcagca tcttggagag cggattgcgc
      421 ggatgcagcc cagcgaaaag cccaagcgga ataccaatca ccagcgccag cagcagcgcc
      481 gaaacagcga gttcgagggt cgcgggaagg cgttgcagga tcaggcggat tgcgggctcg
      541 ttataaacga aactgttgcc aaggtcgccg tgcatcgcgc ctgcgagaaa cgcgaggtac
      601 tgtttccaaa gcggctggtc gaggccgagt tgagcgatga tgcgcgcacg gtcgacctga
      661 tcgacgtcct gtccgatgag aatatcaatc ggattgccga tcgcatgcag gccgatgaac
      721 acgatcagcg tcatcagcag cacgacgaac gccgcctgcg cgattcggcg aacgagccag
      781 ccgctcattg gtcctccgcg tactggggcg gcgcttcggc cggttgccat tcatcgccgt
      841 agagttcggg ttcggcgtac gcttccagcg ctgcgtaatg ctgcgcaacg tcctcgctat
      901 acagcaggct tgctaaacct tgcgccagcc gttttgcgcc tgtactgatc gcgggaatgt
      961 cgccggagac ggcgccttgc gagagcgacg cgggatagca gaagcagtgg atgcgcgata
     1021 agccggggca atcgccgggg gatttttcga ggaattcaaa cgcgggtccg acatcgggcg
     1081 aatcggacag ctcggcgtct tcatcgccgg gcggcggcgt atagcggtcg gcccacgtgc
     1141 ggatataggc gctaaacgcg gcgaattccg ggcgcgcgga ccagtcgacc ttgaagccag
     1201 tggagaccac gaggaagtcg gccgcgaagg tacccttggg tgtgtggatc gagagaccgc
     1261 tctccgtgct ttcaaccgat aacaccgggc atccaaggtt gaaacgtgcg ttcggatgac
     1321 gcgatacccg cagcgtactg ccacgcggcg gcggtacctg cacagtattg atgtaatggc
     1381 ggatcttcca cttccattcg tcgggcagag attggtggcc atgcgtcaga cctggatttc
     1441 cggctccctt gcccttgttc acgcgtggga gatcagaacg cctaatcagc agatcgacgc
     1501 tggccgcgcc ggcttcgagc gcagtggcgg cgctgtccat ggcagaagaa ccaccgccga
     1561 ccacggccac gcgcttgccg gtcagcgtcg tgtaatcggt tgtatcagac gaatgcgccc
     1621 accgactgcg cggcagtcct tcaacaaacc ccggcaatgc aggcccgccc aatccgtcgc
     1681 gcccggtagc gagcacaacg cgtcgcgcat agacctcaaa gcgacgatca aaagttcgaa
     1741 tgcttaatac gacgagacca tcggcgcgcg gcgtcacagc ttcaacggtg t
//
LOCUS       DATGBK010000755         3987 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_8886, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000755 DATGBK010000000
VERSION     DATGBK010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3987
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8886"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..689
                     /locus_tag="VKJ77_10630"
     CDS             <1..689
                     /locus_tag="VKJ77_10630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45767.1"
                     /translation="QLRGELTGQVSLGVAAEAMMRLFPALLASFRERCPRIDVHLTSA
                     TSRVLTAWVRDGSLDFALALVSNEADIHDLEATTLFESPVAIIARRGHPLGRAESLRA
                     LQDCEWVSTRPRHAGDVANRLSTLFEDAGLEPPRIAATTEAVFDTLHCVANSDYLSLE
                     PVRLAAHPFFRDHVAIVPIREHALSTRVCLLRRAGVPLTPVAQELASMAVSFARMLPG
                     TVATGEAPGQ"
     gene            798..1385
                     /locus_tag="VKJ77_10635"
     CDS             798..1385
                     /locus_tag="VKJ77_10635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC45768.1"
                     /translation="MTRKKPADSAPRETAAILRHWHDAVPNDRLAHLVKDAARSLVRA
                     LQMRLAEHTVSYGHWTFLRILWETDGLTQRELSTQAGVMEPTTFAAVKAMEALGYVER
                     QQMPDNKKNVHVFLTAEGRALKEKLVPLAEEVNEVSVVGLSEHDIKTARKVLLALIEN
                     LADDELGSTNPMRRVPSTRELGRIIAERGDTVEDR"
     gene            complement(1426..2451)
                     /locus_tag="VKJ77_10640"
     CDS             complement(1426..2451)
                     /locus_tag="VKJ77_10640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC45769.1"
                     /translation="MEYRLLGETGFKVPVLSLGTATFGGSNDFFKAWGSTDADGARSL
                     VDIALEAGVSMFDSADVYSDGMAEEILGKAIAGRRSKVIVSTKGTFPFGSDVNSVGSS
                     RHHLTEAIHGSLKRLNTDHIDIYQLHGFDALTRVEETLRTLDDFVRAGKIRVIGCSNF
                     SGWHLMKSLAVSDREGLARHSVHQAYYSLTGRDFEHELMPLGLDQKVSTIVWSPLGWG
                     RLTGKIRRGTPLPANSRLHKTADMGPPVADEYVYGIVDALDAVAKETGKSVPQIALNW
                     LLQRPTVANVIVGARDEKQFRENLGSVGWSLSAEQLAALDKASTLPLPYPYWHQRGFA
                     DRNPSPV"
     gene            complement(2614..3408)
                     /gene="hutG"
                     /locus_tag="VKJ77_10645"
     CDS             complement(2614..3408)
                     /gene="hutG"
                     /locus_tag="VKJ77_10645"
                     /EC_number="3.5.1.68"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006406806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050129 - N-formylglutamate deformylase
                     activity [Evidence IEA];
                     GO_process: GO:0019557 - histidine catabolic process to
                     glutamate and formate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate deformylase"
                     /protein_id="HMC45770.1"
                     /translation="MTDLYTLHRGDAPLLISIPHVGTEIPESLRPLYTDIALTVADTD
                     WHLDRLYDFAREIGATILGARISRYVIDLNRPSNDESLYPGQTTTGLCPGETFRGMPL
                     YRDGVGPDAAEKAGRVVTYWQPYHDVLEAELARLRAAHPNVLLWEAHSIASVLPRLFE
                     GKLPDLNIGTQDGRTASPGALQAVTDAAARSAYTWIANGRFKGGYNTRHYGTPETGVH
                     AIQLEMCQSTYMDETEPFDYAPEAASQVQVVVKDMVGAALDVIRGL"
     gene            complement(3479..>3987)
                     /locus_tag="VKJ77_10650"
     CDS             complement(3479..>3987)
                     /locus_tag="VKJ77_10650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012406810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45771.1"
                     /translation="TVIADPRIVEIPLFSEAFVAVASRRFLASRPAADWRMLASNLPL
                     IRYTGRSVIGQQVERFARHLGIDSPRRYEFDATDPLLSLVAAGLGFAISTPLCLWQAR
                     HYLEEIEVLPLPPGGLARRDFFLLHRESEWDGFAAELISLTRGVLDQRIRPALQQALP
                     NLPDDAIQ"
BASE COUNT          789 a         1252 c         1216 g          730 t
ORIGIN      
        1 gccagttgcg cggcgagttg acgggccaag tttcgctcgg cgtcgcggct gaggccatga
       61 tgcgattatt tcccgcgctg ctcgccagtt ttcgcgaacg ctgcccgcgt atcgacgttc
      121 atctgaccag cgccacgtcg cgggtcctga cggcctgggt gcgcgacggc agcctggact
      181 tcgccttggc gctggtatcg aacgaagcgg atatccatga tctcgaggcg accacactgt
      241 ttgaatcgcc ggtcgccatc atcgcgcggc gtggtcatcc gctaggccgc gcggaatcgc
      301 tgcgggcgct gcaggactgt gaatgggtca gcactcggcc gcgccatgcg ggcgatgtcg
      361 cgaaccgcct gtccactttg ttcgaggacg cggggcttga accgccgcgt atcgcggcca
      421 cgaccgaagc tgtgttcgat acgctgcatt gcgtggcgaa cagcgattat ctgtcgctcg
      481 aacccgtgcg tctcgcggcg catccgttct tcagggacca cgtggcgatt gtccctatca
      541 gagagcacgc gttaagtacc cgcgtatgcc tgctgcgccg cgcaggcgtg ccgttgacgc
      601 cggtcgcgca ggagctggcg tccatggctg tgtcgtttgc gaggatgctg ccggggaccg
      661 ttgcgacagg cgaagcaccc ggtcaataac actcgttttt ccgtcacacc cggacggcgc
      721 ggcgcccttc ttccggttcg ttccgaccgg ctatcatgtc gctctgggca acgcttcgag
      781 ctttgggaaa caccgtcatg acacgaaaaa aacctgcgga cagcgcgcct cgcgaaactg
      841 ctgcaatcct gcgtcactgg cacgacgctg tacccaacga ccggctggct cacctcgtga
      901 aggacgccgc gcgttcgctg gtgcgcgcgc tgcagatgcg gcttgccgag cacaccgtgt
      961 cgtacgggca ctggacgttc ctgcggatct tgtgggagac cgatggcctg acgcagcgtg
     1021 agctgagcac gcaggcgggg gtgatggagc caacgacctt tgcggccgtc aaggccatgg
     1081 aggcgctggg ttatgtcgag cgccagcaga tgccggacaa caagaaaaat gtgcacgtgt
     1141 tcctgaccgc cgagggccgg gcgctgaaag agaagctcgt tccgctcgcc gaggaagtca
     1201 atgaagtcag cgtggtgggc ctgagcgagc acgacatcaa gaccgcacgg aaggtgttgc
     1261 tggcgctgat tgaaaacctg gccgacgatg aactggggtc cacgaatcca atgcgccgcg
     1321 tgccttcaac gcgggagttg ggacggatca ttgcggagcg tggggatacg gtggaggaca
     1381 ggtgacgctg aagacgcaat agcatccccc gcccgctccc cctctctaaa ccggcgacgg
     1441 attgcgatct gcgaacccgc gttgatgcca gtacggatac ggcagcggca acgtgctcgc
     1501 tttatccagc gccgcaagct gctcagcact caacgaccac cctacgctgc ccaggttctc
     1561 gcggaactgt ttctcgtcgc gagcgcccac aatcacgttt gcaaccgtcg gcctctgcag
     1621 cagccagttc aacgcaatct gcggcacgct cttgccggtt tccttggcca cggcatccag
     1681 cgcgtccaca atgccgtaga catattcatc ggcaaccggc ggtcccatgt ccgccgtctt
     1741 gtgcaaacgg ctgttcgccg gcaacggagt gccgcgacga atcttgcctg tcagacgccc
     1801 ccaccccagc ggactccaca caatggtcga gaccttctgg tccagtccca gcggcatgag
     1861 ttcatgctcg aaatcacggc cggtcagcga gtaatacgcc tgatgcactg aatgccgcgc
     1921 gaggccttca cggtccgaca ccgccagcga tttcatcaag tgccagccgg aaaaattcga
     1981 gcagccgatc acacggatct tgcccgcacg cacgaagtca tcgagcgtac gcaaggtttc
     2041 ttccacgcgt gtcagtgcgt cgaaaccatg tagttgatag atgtcgatgt ggtcggtgtt
     2101 caggcgcttc aggctgccat ggatggcctc tgtcaaatga tgccgcgacg agccaacact
     2161 attcacgtcc gagccgaacg gaaacgttcc tttcgtcgac acgatcacct tcgagcggcg
     2221 tccggcaatt gccttgccga ggatctcttc cgccatgccg tcggaataga cgtcggcgct
     2281 gtcgaacatc gagacgcccg cctccagcgc aatgtcgacc aggctacgcg cgccatcggc
     2341 gtcagtgctg ccccacgcct tgaagaaatc attgctgccg ccgaacgtgg ccgtgcccaa
     2401 actcagcacg ggcaccttga agcccgtttc gcccagtaag cgatattcca tgtccactcc
     2461 tttccattga aagccgatga gccgctaccg cgccggcgac gcaggcaggc ggcttcgcga
     2521 atgcatcggc catgttaaga gatcgttgaa aatcgcgctt gggtgcccgg cggctgcagc
     2581 cggtcctgcg cttctacgct taaacgagag cgattacagc ccccggatca catccagtgc
     2641 cgcgcccacc atgtccttca ccaccacctg aacctgactg gctgcttcgg gcgcatagtc
     2701 gaacggctcc gtctcatcca tgtaggtcga ctggcacatt tccagttgta tcgcgtggac
     2761 gccggtctca ggtgttccat agtgacgcgt gttgtagccg cccttgaaac ggccgttggc
     2821 aatccacgta taagcgctcc gcgcagcggc atccgtgacc gcttgcaagg cgcccggcga
     2881 cgccgtccgc ccatcctgcg taccgatgtt cagatcagga agcttgccct cgaacagacg
     2941 cggcaacacg cttgcaatgg aatgcgcttc ccacagcaac acgtttggat gcgccgcccg
     3001 caaccgcgcc agttcggcct caagcacgtc gtgatacggc tgccagtagg tcactacgcg
     3061 ccccgctttc tcggcagcat cgggccccac gccatcgcga tagagcggca tgccacggaa
     3121 ggtttcgccc gggcacaggc ccgttgtcgt ctggcccgga tagaggcttt catcattcga
     3181 tggacggttc aggtcgatca cataacgcga gatgcgagcg cccagaattg tcgcgcctat
     3241 ctcgcgggcg aagtcataca ggcggtcgag atgccagtcg gtatcggcga cggtcagcgc
     3301 tatgtccgtg tacaacggcc gcaagctctc gggaatttca gtgccgacgt gcgggatgga
     3361 aataagcagc ggcgcgtcgc cgcgatgcaa ggtgtagaga tcggtcatga tggattccgg
     3421 gcgaagtaag cgtacgaaaa ggggtagaga aagaggtcaa taggcaagtc gataagcgtt
     3481 attggatcgc atcgtccggc aggttgggta gcgcttgctg aagcgccggg cgaatgcgct
     3541 ggtcgagcac accacgcgtc aaggagatca gttcggccgc aaaaccatcc cattcgctct
     3601 cacggtgcag caggaaaaaa tcgcggcgtg caaggccgcc tggcggcagc ggcaacacct
     3661 cgatttcctc cagataatgg cgcgcctgcc acaagcaaag tggcgtggag atggcgaaac
     3721 caagacccgc ggcaacgagg ctgagcaggg gatcggtagc gtcgaattca taacgccgcg
     3781 ggctgtcgat accgaggtgc cgcgcaaaac gctcgacctg ctggccaatc accgagcgcc
     3841 ccgtataacg aatcaaagga agattgctgg cgagcatacg ccagtccgcc gcgggtcgcg
     3901 acgcgaggaa gcgccgcgat gcaaccgcca cgaatgcctc ggagaacaag ggaatctcca
     3961 cgatacgcgg gtccgcaatg acagtct
//
LOCUS       DATGBK010000756         2158 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_333149, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000756 DATGBK010000000
VERSION     DATGBK010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333149"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1225)
                     /locus_tag="VKJ77_10655"
     CDS             complement(<1..1225)
                     /locus_tag="VKJ77_10655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011354722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC45772.1"
                     /translation="MADDLALGEPHTVVVIGGGQAAGWIVKTLRKDGFTGRLVMIADE
                     IHLPYERPPLSKAVLSGDADIDSVRLVSSDDFAALNVEAWQPDRAVAIDREQRTVRTS
                     QGREVRYDRLVIATGGAARRLPESLVKTSHIAYLRTLDDAVSLGARLRKSARVLVIGG
                     GWIGLEVAATARKLNVEATVIEGAPRLCGRSLPQTMSDFLLDLHRSNGVDVRLDASLV
                     ALDDHEQGVRATFADGSTLDADFAVAGIGLTPHTSLAQEAGLDVNDGIVVDEFGATSD
                     PFIFACGDVSNHPNAWLKRRVRLESWANAQNQAIATARALMGTREPYAEIPWFWSDQY
                     DVNLQILGDIPAGIEPVIRGDLNARRASLFFLDAGVIRGVISINMPRDLKLARKWMSR
                     GRSIDVAALADTAKAL"
     gene            complement(1218..>2158)
                     /locus_tag="VKJ77_10660"
     CDS             complement(1218..>2158)
                     /locus_tag="VKJ77_10660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC45773.1"
                     /translation="TYGVTDLATCRTFFSDWGLKEVAHDETHARFEAQNGCTIMVVDA
                     NDPSLPPAFEPGPTLREVTWGVATAAELDALRGKFAGQPGHFETSDAVGCIDPNGMAI
                     RVEVTRKRTLDLKGSPSNVWGQNLRIDTPSPVYERAEPIEVGHVVFFTNCVAEQEKFY
                     HDLLGFETSDRYPGRGAFMRCAPHGGHHDLFLLQLPDGRRGLNHVAFTVRDIHEVFGG
                     GLHVSRCGWTTQLGPGRHPVSSAYFWYFQNPAGGLIEYYADEDVLTPEWQPRDFEPGP
                     TVFAEWAVDGGLDGNTRRQKNAKAPEGKFMTERKNG"
BASE COUNT          408 a          709 c          645 g          396 t
ORIGIN      
        1 cgagcgcttt ggctgtatcg gcgagcgccg cgacgtcgat cgagcggccc cggctcatcc
       61 acttgcgcgc aagcttcagg tcacgcggca tattgatcga aatcacgcca cggataacac
      121 ccgcatccag aaagaaaaga ctcgcgcggc gagcgttcag gtcgccgcga atgaccggct
      181 cgatgccagc gggaatgtca ccgaggatct gcaggttcac gtcgtattga tcggaccaga
      241 accacgggat ttccgcgtag ggctcacgag tgcccatcaa cgcgcgcgct gttgcgatag
      301 cctggttttg tgcgttggcc catgattcga gtctgacgcg acgcttgagc cacgcgtttg
      361 gatggttcga gacatcaccg cacgcgaaaa tgaacgggtc cgatgtcgcc ccgaattcat
      421 cgaccacgat gccgtcgttc acgtcgagcc ccgcctcttg ggcgagtgac gtgtgcggcg
      481 tcaggccaat cccggcgact gcgaaatcgg catcgagcgt gctgccgtcc gcgaacgtgg
      541 cgcgcacgcc ttgctcgtga tcgtccagcg cgacgagcga tgcgtcgagc cttacatcga
      601 ccccattcga gcgatgcaaa tccagcagga agtccgacat tgtttggggc aacgagcggc
      661 cgcacaggcg cggcgcgcct tcgatgacag ttgcctccac attaagcttg cgcgccgtcg
      721 ccgccacctc gaggccgatc cagccgccgc cgatcacaag cacgcgcgca ctcttgcgta
      781 atctcgcgcc gagcgacaca gcgtcgtcga gcgtacgcag ataggcaatg tgcgatgtct
      841 tcacgagcga ttccggcaag cgccgcgcgg caccgccggt cgcaatcacc agccggtcgt
      901 accgcacctc gcgaccctgc gatgtacgca cggtccgctg ttcgcgatcg atcgccaccg
      961 ctcgatccgg ctgccacgct tctacgttca gcgccgcgaa atcatccgat gaaaccagcc
     1021 gaaccgagtc gatatcagca tcgccggaaa gcactgcctt cgagagcggt ggtcgctcgt
     1081 acggcaagtg aatctcgtcg gcgatcatca cgagtcgccc cgtgaaaccg tccttgcgca
     1141 gcgtcttgac gatccatccc gctgcctgac caccgccaat caccacgacc gtatgcggtt
     1201 cgcccaatgc cagatcgtca gccatttttg cgctccgtca tgaacttccc ttccggcgcc
     1261 ttcgcgttct tttgccggcg cgtgttgccg tccagaccgc cgtcgacggc ccattcggcg
     1321 aacaccgtcg gaccgggttc aaagtcgcgc ggctgccact cgggcgtgag cacgtcttcg
     1381 tcggcgtagt actcgatcaa gccgcccgcc ggattctgga agtaccagaa atacgctgac
     1441 gacaccggat gcctgccggg cccgagttgc gtcgtccagc cgcatcggct gacatgcagg
     1501 ccgccgccga agacttcatg gatatcgcgc acggtgaacg cgacgtgatt caggccgcgg
     1561 cggccgtcgg ggagttgcag caggaacaaa tcgtgatgac cgccgtgcgg cgcgcaacgc
     1621 atgaacgcgc cgcgccccgg atagcgatcc gacgtctcga agccaagcag gtcgtgatag
     1681 aacttttcct gttcggcgac gcaattcgtg aagaacacga catgaccgac ttcgatgggt
     1741 tcggcgcgtt catacacggg actcggcgta tcgatgcgca aattctgacc ccacacattc
     1801 gacggcgagc ccttgagatc aagcgtgcgc ttgcgcgtga cttcaacgcg tatagccatg
     1861 ccgttcgggt cgatgcaacc caccgcgtcg ctggtttcaa agtgacctgg ctgaccggcg
     1921 aacttcccgc gcaaagcgtc gagttctgcg gcggtcgcga caccccatgt cacttcgcgc
     1981 aacgtcggac ccggttcgaa agcgggcggg agcgatggat cgttcgcatc gacgaccatg
     2041 atcgtgcagc cgttctgcgc ttcgaaacgc gcatgggttt cgtcgtgcgc gacttctttc
     2101 aggccccagt cgctgaagaa ggtcctgcag gttgcgaggt cggtcacgcc gtaggtaa
//
LOCUS       DATGBK010000757         1907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_217578, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000757 DATGBK010000000
VERSION     DATGBK010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217578"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            256..>1907
                     /locus_tag="VKJ77_10665"
     CDS             256..>1907
                     /locus_tag="VKJ77_10665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase"
                     /protein_id="HMC45774.1"
                     /translation="MSHADDPRDEQPASDLPHDPVRRRLLAAGVGLAGLTGLSLSGCN
                     LFDSRPVTPKTAADIALDKTLQAQVRHIVVIYAENRSFSNLWGNYPGVQYPLEAVPAS
                     RYVQLDRDGRTPMPVLPKIWGGLVPQAQEVDGKRYMISEKQIDGVPNGPFHLVDGQGQ
                     PLPNGVITRDLVHRFYQNQMQINAGRNNQFAAWGDSGGLVMGHYRNSADSLKLWNIAR
                     QNVLCDNFFMAAFGGSWLNHIYLISAQAPFYPDAQTGPAKKLLSVLDGDDPLGTRLKL
                     AADSPASALDGPPSYVNDGALTADGYAVNTMAPPYQPSNVRAAEGGDPALADPSNYRV
                     LPPQSYATIGDRLSDKGVDWAWYSGGWNYALTHSDTGMVPDFQYHHQPFNYFRSFAPG
                     TQARTQHLRDAGLGDDPSTNKFIADIDAGRLPAVTFYKPQGNLNMHAGYADVESGDRH
                     LANIVERIQRGPQWESTVVIITHDENGGWWDHVPPPKGDRWGPGSRIPALMIAPFAKK
                     GVVDHTVYDTNSILRFITRVHDLVPLDGVVARDRAFAANGEAP"
BASE COUNT          392 a          591 c          563 g          361 t
ORIGIN      
        1 ttcggtcagc tattcggaac cacccgtttc cgggcaagat tcaggtaggc gaaagcggat
       61 gaagcaacgt acaggcgctc ttcgccatag gtgatcgggt agcgtctcgt gctcgtgcat
      121 tacgttgatt cgcgggtttg attcaatgct ttgattcact gctttcattc aaaatagtca
      181 gctgcaagat tgagccacat tatttagcta catcaataag cacattgatg agccgccaga
      241 catccaggag ctgcgatgag ccacgctgac gatccccgcg acgaacaacc cgcgtccgac
      301 ttgccacacg accccgtacg ccgacgcctg cttgcggctg gggtcggcct ggcaggcctc
      361 accggattgt cgctgagcgg ctgtaatctc tttgactcgc gcccggtcac gcccaagacg
      421 gccgctgaca ttgcgctcga caaaacgctg caggcgcagg tccgtcatat tgtcgtgatc
      481 tacgcggaaa atcgcagctt cagcaacctc tggggtaact atcccggcgt gcaatatccg
      541 ctggaagccg tgcctgcgtc gcgctacgtc cagctagacc gcgacgggcg cacacccatg
      601 cctgtgctgc cgaaaatctg gggcggcctc gtgccgcaag cgcaggaagt ggacggcaag
      661 cgctacatga tttcggaaaa acagatcgac ggcgtgccga acggaccgtt ccatcttgtt
      721 gatggacagg ggcaaccgct gccgaacggc gtcatcacgc gcgacctggt gcaccgtttc
      781 tatcagaacc agatgcagat caacgcgggc cgcaacaacc agtttgccgc atggggcgat
      841 tctggcggcc tggtcatggg gcattaccgt aattcggctg attcgctgaa gctctggaac
      901 atcgcacggc aaaacgtgct gtgcgacaac ttcttcatgg cagcattcgg cggttcatgg
      961 ctcaatcata tttatctgat ttcggcacag gccccgtttt atccggacgc gcaaaccggc
     1021 cccgcaaaaa agctcctgtc cgtgctggac ggcgatgatc cgctgggcac gcgcctgaaa
     1081 ctcgcggccg attcaccggc atcggcgctg gatggccctc cgtcctacgt caacgacggc
     1141 gcgctcacag ccgatggcta cgcggtcaac accatggcgc cgccctatca gccgagcaac
     1201 gtccgcgcgg cggaaggcgg ggatccggca ctggcggacc cgtcgaatta tcgcgtgctg
     1261 ccaccgcaga gttacgccac catcggcgac cggctatcgg acaaaggcgt ggactgggca
     1321 tggtatagcg gcggctggaa ctatgcgctc acgcatagcg acaccggcat ggttcccgat
     1381 ttccagtatc accatcaacc gttcaattat ttccgcagct ttgctcctgg cacgcaggct
     1441 cgcacgcaac acctgcgcga cgccggtctg ggcgacgatc cgtcgacgaa caaattcatt
     1501 gcggatattg acgcagggcg gctgccggct gtcacgttct acaagccgca aggcaatctg
     1561 aacatgcatg cgggttacgc cgatgtcgaa tcgggcgacc gccatctcgc caacatcgtc
     1621 gagcgaatcc agcgtgggcc gcaatgggaa agcacggtcg tcatcatcac gcacgacgag
     1681 aacggcggct ggtgggatca cgtgccgccg ccgaaagggg atcgatgggg accggggtcg
     1741 cgcattccag ccctgatgat cgcgccgttt gcaaagaagg gggtcgtcga ccatacggtc
     1801 tacgacacga actccatcct gcgcttcatc acgcgtgtcc acgacctggt gccgcttgac
     1861 ggcgttgtcg cgcgggaccg ggcattcgcg gcaaacggtg aagcgcc
//
LOCUS       DATGBK010000758         3339 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147728, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000758 DATGBK010000000
VERSION     DATGBK010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3339
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147728"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..1050
                     /locus_tag="VKJ77_10670"
     CDS             103..1050
                     /locus_tag="VKJ77_10670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC45775.1"
                     /translation="MTIDADLLAYYAKVAAAFPELPADADPIAMRQQFQSVAREFAAP
                     RPAGVDVEDLALPLDGRTLRTRVYRPAGARKALPLVVYFHGGGWVVGDLDTHDLMVAR
                     FALDSHCAVVSVDYRMAPEHPFPVPVDDALDALLWLAEQRSRLGLATSRLGVAGDSAG
                     GHLAAVAARAANDRVAGLVTAQLLIYPVARCRFEGGSFTANAEGPGLTTEEMRFYWAQ
                     FLTAEPPADDDVRAFPLAQSYDRTPARALIVAAAYDPLYDDAHEFARFLEANGGRTEV
                     IDAHDMTHGFGRIQAHSKAAAAWMKKTSERFGELLHAER"
     gene            1319..1663
                     /locus_tag="VKJ77_10675"
     CDS             1319..1663
                     /locus_tag="VKJ77_10675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PrlF family
                     antitoxin"
                     /protein_id="HMC45776.1"
                     /translation="MSYAIENDFAMEAESSLTDRYQTTVPETIRRALKLGKRDKIHYR
                     VKATGEVTMTRVAADEEDPAFGPFLAFLAHDIERHPERVKSFAPEFVQSIRALTKDVI
                     FDIDAPLSPDDE"
     gene            1660..2172
                     /locus_tag="VKJ77_10680"
     CDS             1660..2172
                     /locus_tag="VKJ77_10680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005012414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YhaV family
                     toxin"
                     /protein_id="HMC45777.1"
                     /translation="MTAQPVPLVVNDWTIFGHPLFIDQLELLHSEVLALSQKDPDNFH
                     KKNAAKRLAVIAHLMLDAIPQDPEKAEYRQGITLGDDRKHWFRAKFFQQYRLFFRYHK
                     ASKILLLGWVNDEDTKRAYGSGSDAYKVFAKMLDKGQPPDDWDQLLAEATAASGRWAE
                     TLQAVGNLNK"
     gene            complement(2223..3098)
                     /locus_tag="VKJ77_10685"
     CDS             complement(2223..3098)
                     /locus_tag="VKJ77_10685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45778.1"
                     /translation="MKVLAPGCVSLRGVFRTGVCALLLGFAIGAQAQTVQAGSITAPP
                     GATLPVSAPAAPAAPSRLDEILARGTLRVCTTGDYKPYSFLRPDGQFEGIDIDAAQNL
                     AQSMNVKAEFIKTSWSNLMNDFVAKCDIAVGGVSTSLERQKRAFFTQPYMVDGKTPIV
                     RCADVDKYQTVAQIDQPGVRTIVNPGGTNEKFAKQFFTHSQLIEYPDNVTIFKQILGG
                     QADVMVTDASETLLQQKLNPGLCSVHPDKPFQFGEKAYLLPRGDVVFQQYVDQWLHLS
                     RSTGEFQAVLDKWLK"
     gene            3242..>3339
                     /locus_tag="VKJ77_10690"
     CDS             3242..>3339
                     /locus_tag="VKJ77_10690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase family protein"
                     /protein_id="HMC45779.1"
                     /translation="MPSTLLNDTFLRALQRQPTDYTPIWLMRQAGR"
BASE COUNT          664 a         1002 c         1010 g          663 t
ORIGIN      
        1 gcttttagaa atgcttgcgc cgccaagcgc gatatgtaga ttttaaggac aatcaaaatg
       61 cgtcgacccg accgggcggc gaactgcatt ggagacaacc gcatgaccat tgacgcagac
      121 cttctcgcct actacgccaa ggttgccgca gcgttccccg aactgccggc tgatgccgat
      181 ccgatcgcta tgcggcagca gtttcagagc gtcgcgcgtg agttcgccgc gccccggccg
      241 gctggggtgg atgttgaaga cttggcgctg ccgctcgacg gacggaccct gcggacgcgg
      301 gtataccggc cggcaggggc caggaaagcg ttacccctag tggtctattt tcatggcggc
      361 ggctgggtag tcggtgatct ggacacgcac gacctgatgg tcgcgcggtt cgccctggac
      421 tcgcattgcg cggtcgtgag cgtggattac cggatggcgc cggagcatcc gttccccgtg
      481 cccgttgacg atgcgctcga tgcgctgctg tggctcgccg agcagcgctc gcgtctgggc
      541 ttggcgacca gccggctggg cgtagccggc gacagcgcgg gcggccatct tgcagccgtg
      601 gctgcgcgtg ccgcgaacga tcgcgtggcc ggtctggtca cggcgcagtt gttgatttat
      661 ccggtggcgc gctgccgttt cgagggcggg agctttacag ccaacgccga agggccgggc
      721 ttgaccaccg aagaaatgcg cttttactgg gctcaattcc tgacggccga accgcccgcc
      781 gatgacgacg tgcgcgcttt cccgctcgcg cagtcgtacg atcggacgcc ggcacgcgcg
      841 ttgatcgtgg cggcagccta cgatccgctc tacgacgatg ctcacgaatt tgcgcgtttt
      901 ctggaagcga atggagggcg caccgaagta attgacgcac acgacatgac gcatggcttc
      961 ggccggatcc aggcgcattc gaaagcagcg gcggcctgga tgaaaaaaac gtccgaacgc
     1021 ttcggtgaat tgttacacgc agagcgttga cttttcgatg cccagcgcca ttggcttaca
     1081 ttgttattac gaaaagttat caacccgcta aatctgacgt gcgcgttagc aatcggggaa
     1141 aaggcggcag cgcccgcacg gcagagcgcc gactttttcg cccgcgcccg cgatggcccc
     1201 atcgatcaag ctcatggcgg cgctcatcgg acgcccagag cgaaggtaat gcgtttgcat
     1261 tgacgcggca attcatttgc attaccgtgt gtgtggttgt tacggaatgg agtccgacat
     1321 gtcatacgca atcgagaacg atttcgcgat ggaagctgaa tcatcgctga ccgaccgata
     1381 tcaaaccacg gtgccggaga cgatccggcg cgcgctcaag ctcggcaagc gagacaagat
     1441 ccactatcgc gtcaaggcga ccggcgaagt caccatgacc cgggtcgcag ccgacgaaga
     1501 agatcctgcc tttggtcctt tcctggcctt tctggcgcac gatatcgaac gccatccgga
     1561 gcgcgtgaag tcattcgcac ccgagtttgt ccagagcatt cgggcgctga cgaaggacgt
     1621 tatcttcgat attgatgcgc cgctttcgcc ggacgatgaa tgaccgcaca accagttcct
     1681 cttgtcgtca acgactggac gatcttcggc cacccgcttt tcatcgatca gcttgaactg
     1741 ctccactcgg aagtcctcgc gctcagtcaa aaggatcccg acaatttcca caagaagaac
     1801 gctgccaagc ggctcgccgt aatcgcgcat ctgatgctgg acgcgatccc acaggatccc
     1861 gagaaggctg aatatcgaca gggcatcacg ctcggcgatg atcgtaagca ttggtttcgc
     1921 gcgaagtttt tccagcagta ccgtctgttc ttccgttacc acaaggcttc gaagatcctc
     1981 ctcctcggct gggtaaatga tgaggacacc aagcgtgcct acggctcggg gagcgacgcc
     2041 tataaggtct tcgcaaaaat gctggataag ggtcaaccgc ctgatgactg ggaccaacta
     2101 ctcgccgagg cgaccgccgc gtcgggccga tgggctgaaa cgctccaagc cgtcggcaac
     2161 ctgaacaaat gatgggaaag agcggcccca cgagggcagg ccgcgaccgg ccgcctccgc
     2221 cgtcatttca gccatttatc gagcacagcc tgaaactcgc ccgtcgagcg tgacaggtgc
     2281 agccattggt cgacgtattg ctggaatacg acgtctccgc gcggcagcag gtacgccttt
     2341 tctccgaact ggaatggctt gtccggatgg accgagcata gccctggatt cagcttttgc
     2401 tgaagcaggg tttcggaggc gtcggtgacc atcacgtcgg cttgaccacc aaggatttgc
     2461 ttgaagatgg tcacgttgtc cgggtactcg atcagctgcg agtgagtgaa gaactgcttc
     2521 gcgaacttct cgttcgtccc ccccggattg acgatggtgc gtacaccggg ttgatcgatt
     2581 tgcgcgacgg tctggtattt atcgacatcg gcgcaacgga cgatgggtgt cttgccgtcg
     2641 accatgtagg gttgcgtgaa gaacgcgcgt ttctggcgtt cgagcgaggt cgatactccg
     2701 ccgaccgcga tgtcgcactt cgcaacaaaa tcgttcatca ggttcgacca cgatgtcttg
     2761 atgaactcgg ctttgacgtt catcgactgg gcgaggtttt gcgcggcatc gatgtcgatg
     2821 ccttcaaact ggccgtccgg cctcaggaat gagtacggct tgtagtcgcc cgttgtgcag
     2881 acgcgcagcg tgccgcgtgc gaggatttcg tcgagtctcg atggcgcggc cggggctgcc
     2941 ggtgcgctga ccggtaacgt cgccccgggg ggcgcggtga tgctgccggc ttgcacggtt
     3001 tgcgcctgcg cgccgatggc aaaaccgagc agcagggcgc aaacacccgt gcgaaagaca
     3061 ccgcgaagcg acacgcaacc aggggcaaga actttcatcg acactcctcg aaagataatt
     3121 tcagccgccg atgatatcga aggggttcgt cgttcgcacc taccccaaaa accccaagcc
     3181 ccgagtacga acgaaaaccc ctgtccggta gaatgccctt ttgcccaacg ctccaagcca
     3241 cgtgccttcc acactcctga acgacacttt cctgcgcgcg ctgcagcgcc agcccaccga
     3301 ctacacgccg atctggctga tgcgtcaggc gggccgcta
//
LOCUS       DATGBK010000759         1886 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_78481, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000759 DATGBK010000000
VERSION     DATGBK010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78481"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..1492
                     /locus_tag="VKJ77_10695"
     CDS             89..1492
                     /locus_tag="VKJ77_10695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC45780.1"
                     /translation="MYKILLALAASMTLAACAVQPASHADLPSTVQSIAPANWSVDAP
                     QDNVDAAAWWEQFGDPVLHELVSSVLSQNLDVQAALERVKQAQAVTTQRRAALLPELD
                     ATATAADARQNTPPPLGYVRQAGFGVTLGWTPDVFGGERLELLAAQAQLTGRQHDVDA
                     LRLALAANTASAYVDLRWAQSEQKILQDNIAIRERALRLTQERMQYGLSPRLDVTRAQ
                     NQLSELQARLPRANATVQHQLSLIAVYSGRTPESVDTLVLATPGTIPTPSSAVPQMLP
                     SEALLRRPDVRSAYAELTQRAAEVGVAQADRYPKFSLQLTDGLLASSYLGLPTLTDNL
                     FSAALNATSPIFNAGRITAGIEQSQSRMRESDLRLRQTLLQALKDVEDTRTDLVSTSE
                     QADRLKEALQSSDQSLRLSTQLYKGGASGFLDVLAAQEACLQDSDALNQARREHALAA
                     VALYRSLGGGWSEAKQE"
     gene            1569..>1886
                     /locus_tag="VKJ77_10700"
     CDS             1569..>1886
                     /locus_tag="VKJ77_10700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45781.1"
                     /translation="MALKNLLRRLDLTTLQLFLAVYEEGTLTRAAEREAIAVSAASKR
                     LLELEQAVGATLFVRRARGMELTPAGETLLHHARRVLRDVENIGIELAEHASGVRGFV
                     RMMA"
BASE COUNT          344 a          587 c          606 g          349 t
ORIGIN      
        1 tgtgcttcgc cgtcggcata gtcagcgtga ttttcgtgcg gcctatcggc gccgcgccac
       61 cttctcctga cgctcattga ggtcgaccat gtataagatt ttattggcac tggcagcaag
      121 catgacgctc gcggcgtgcg ctgtgcaacc ggcgagccat gcggatttgc cgtcgaccgt
      181 acagtcgata gcgcccgcga actggagcgt cgatgccccg caagacaatg tggatgccgc
      241 cgcgtggtgg gagcaattcg gcgacccggt gctgcatgaa ctggtgagct cggtgctgag
      301 tcagaacctc gatgtgcaag ccgcactgga gcgggtgaag caggcgcagg ctgtgaccac
      361 acagcgtcgc gcggcgcttc tgccggaact cgacgcgact gctaccgccg ccgatgcgcg
      421 ccagaacacg ccgccgccgc tgggctatgt tcgtcaggca ggtttcggcg tcacgctagg
      481 ctggacgccc gacgtattcg gcggcgagcg ccttgagctg ctggcggcac aggcgcaatt
      541 gacgggccgt caacatgatg tcgatgcgct gcgtctcgcg ctcgcggcaa atacggcgtc
      601 ggcgtatgtg gatctgcgct gggcgcaaag cgaacagaag atcctgcagg acaacatcgc
      661 gatccgggaa cgtgcgctac gcctgacgca agaacgcatg caatacgggc tctcgccgcg
      721 gcttgacgtc actcgcgcgc agaaccagtt gagcgagttg caggcgcgtt tgccgcgtgc
      781 caacgctact gttcaacatc agctaagcct gatcgcggtg tactcggggc gcacgcccga
      841 atccgtcgat accctcgtgc tcgccacacc cgggaccatc ccgacgccct cgagcgcggt
      901 accccagatg ctgccctcgg aggcgttgct gcgccgtccc gatgtccgca gtgcctacgc
      961 cgagctcacg caacgcgcag cggaagtggg cgtcgcgcaa gcggaccgtt acccgaagtt
     1021 ctcgctgcaa ctcaccgatg gtttgctggc gtcgtcgtat cttggcttgc ccacgctcac
     1081 cgacaacctc ttcagcgccg cgctcaatgc aaccagtccc atctttaatg ccgggcgcat
     1141 tacggctggc attgagcaga gccaaagccg catgcgcgag tccgatctgc gtctccggca
     1201 gaccctgctg caggcgctga aagatgtgga ggacacgcgt acagatcttg tcagtacgtc
     1261 agaacaggct gaccgcctga aggaagcatt gcaatcctcc gatcagtcgc tgcgtctctc
     1321 cacgcaactt tataagggcg gtgcgagcgg tttcctcgat gtactcgcgg cacaggaagc
     1381 gtgtctgcag gactcggatg cgctgaatca ggcgaggcgt gaacacgcgc tggcagcggt
     1441 cgcgttgtac cgttcgcttg gcggcggctg gagcgaagca aagcaagagt gacaaagcag
     1501 gcgtaatgcg cagggtctgc ctcgggtaac atcgggcatc ttttgtgttc atttgcctga
     1561 ccacccgcat ggcactcaaa aacctgttga gacggcttga cctgaccacc ctgcaactct
     1621 tcctcgcggt ctacgaggag ggcacgctca cccgtgcggc cgagcgggag gctatcgctg
     1681 tttcggccgc gagcaagcgg ttgctcgaac tcgaacaagc cgtgggtgcg acgctgttcg
     1741 tgcgccgggc aagggggatg gagctcacgc ccgcgggcga aactctgctc catcacgcgc
     1801 gtcgcgtgct gcgcgatgtc gagaacatcg ggattgagtt ggccgagcac gcgagcggcg
     1861 tgcgcggttt tgtccgcatg atggcg
//
LOCUS       DATGBK010000760         2362 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_286958, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000760 DATGBK010000000
VERSION     DATGBK010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286958"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..697)
                     /locus_tag="VKJ77_10705"
     CDS             complement(<1..697)
                     /locus_tag="VKJ77_10705"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006754104.1"
                     /note="acts in conjunction with GvcH to form
                     H-protein-S-aminomethyldihydrolipoyllysine from glycine;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase
                     (aminomethyl-transferring)"
                     /protein_id="HMC45782.1"
                     /translation="MKLEHPDRLMNRSSLSLAALECHDAFAHRHIGPDAADQHAMLEA
                     LGFASRAALIDAVIPEAIRRKETLPLGAFTQPKSEAEALASLRKLADQNLVFRNYIGH
                     GYYGTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMIIDLTGLAISNA
                     SLLDEATAAAEAMTLLQRAGKPKSNLFYIADDVLPQTIEVVRTRAKPAGIEVKVGPAA
                     DAATANAFGVLLQY"
     gene            complement(766..1146)
                     /gene="gcvH"
                     /locus_tag="VKJ77_10710"
     CDS             complement(766..1146)
                     /gene="gcvH"
                     /locus_tag="VKJ77_10710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HMC45783.1"
                     /translation="MSIPAELKYTESHEWVRTESDGTLTIGITDHAQEALGDVVFIEL
                     PPVGKTVAAGDAIAVIESVKAASDIYAPVAGEIVAANDALTGTPDQINGTPYESWLFK
                     IKPAADAKTDRLIDAAAYGSAIGE"
     gene            complement(1213..2337)
                     /gene="gcvT"
                     /locus_tag="VKJ77_10715"
     CDS             complement(1213..2337)
                     /gene="gcvT"
                     /locus_tag="VKJ77_10715"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HMC45784.1"
                     /translation="MSDLQHTPLHATHLALNARMVDFGGWDMPVNYGSQIDEHHAVRT
                     DAGMFDVSHMRVVDFTGDKAREFFKYAIANNVDKLTVPGKALYSCLLNPEGGVIDDLI
                     VYYFADDNYRVVVNAGTAEKDIAWFGHLNAEGGFGLTITPRRDFAIVAVQGPNAREKV
                     WQVLPETRASTAELKPFNAVQFPASSFGDVMLARTGYTGEDGFEIVVPATQVAAFWNA
                     LIAQGVKPAGLGARDTLRLEAGMNLYGQDMDDTVSPLDAGLAWTVDLTNPDRAFVGRA
                     ALEANGSKARFVGLILQKENGRAGGVLRAHQKVVTADGEGEITSGTFSPSMQESIAFA
                     RVPASVKAGDKVHVVIRDKQLPASVVKLPFVRNGKVLAAL"
BASE COUNT          405 a          687 c          757 g          513 t
ORIGIN      
        1 ggtattgcag cagcacgccg aacgcgttgg cggtggcggc gtcggcggca ggacccactt
       61 tcacctcaat gcccgccggt tttgcacgcg tccgcacgac ttcgatggtc tgcggcagca
      121 cgtcgtcggc gatataaaac aggttcgatt tcggtttgcc cgcgcgttgc agcagcgtca
      181 tggcttcggc ggcagcggtg gcttcatcga gcaatgatgc gttcgaaatc gcgagaccgg
      241 tcagatcgat gatcatctgc tggaaattga gcaacgcttc caggcggcct tgcgaaatct
      301 ccggctgata cggcgtgtaa gccgtgtacc acgccgggtt ttcaagcacg ttacgcagga
      361 tcacggcggg cgtgtgcgtg ccgtaataac catgcccaat gtagttcctg aacaccaggt
      421 tctgatccgc gagtttcctc agcgatgcca gcgcttccgc ttcgcttttc ggctgcgtga
      481 acgcgccgag cggcagcgtt tctttacgcc ggatggcttc gggaatcacc gcgtcgatta
      541 acgccgcgcg cgatgcgaaa ccaagcgctt cgagcatggc gtgctggtcg gccgcatccg
      601 ggccaatgtg ccggtgggcg aatgcatcgt ggcattcgag cgcggcgaga gacaaggatg
      661 agcggttcat cagacggtcc gggtgttcga gcttcatgag aattcctgct ggtgcggcgt
      721 ggtttgctat tgcgcttaag cacgccgcac ggtcgttgaa aagttttact cgccgatcgc
      781 gctgccgtat gcagcggcat cgatcaaccg atccgtcttg gcgtcggcgg cgggcttgat
      841 cttgaagagc cagctttcgt acggcgtgcc gttgatctga tccggcgtgc cggtcagcgc
      901 atcgttcgcg gcgacgattt cgccggccac gggcgcgtag atatcggatg ctgctttcac
      961 cgattcgatc accgcgatgg cgtcgccggc ggcaactgtc ttacctaccg gcggcaattc
     1021 gatgaacacg acatcgccca gtgcttcctg cgcgtgatcc gtaataccga tggtcagggt
     1081 gccgtcggat tcggtgcgta cccattcgtg cgattcggtg tatttgagtt cggccgggat
     1141 gctcatgcgg atgctccagt tgtcattgag ggtggacgtg cgtggctttt tcggccgttg
     1201 cttgcgggct gtttaaagcg ccgccaacac cttgccgttg cgcacgaaag gcagttttac
     1261 cacgcttgcc ggcagttgtt tgtcgcggat tacgacgtgc actttatcgc ccgctttcac
     1321 gctcgccggc acccgggcga acgcgatgga ttcctgcatc gatggcgaga aagtgccgct
     1381 cgtgatctcg ccttcgccgt cggctgtgac gactttttgg tgagcacgaa gcacgccacc
     1441 ggcgcggccg ttttccttct gcagaatcaa gcctacaaag cgcgccttcg atccattcgc
     1501 ttccagcgcg gcacgtccga cgaatgcgcg atccgggttg gtgaggtcga cggtccaggc
     1561 aaggccggcg tcgagcggcg agaccgtgtc gtccatgtcc tggccgtaca ggttcatacc
     1621 ggcttcgaga cgcagcgtgt cacgtgcgcc gaggccggct ggcttcacgc cttgcgcgat
     1681 caatgcgttc cagaacgctg ccacttgcgt agccggaacc acgatttcga aaccgtcttc
     1741 gcccgtgtag ccggtgcgcg cgagcatcac gtcgccgaat gagctggccg ggaattgcac
     1801 ggcgttgaag ggtttgagtt ctgcggtgga ggcgcgcgtt tcgggcagca cttgccagac
     1861 tttttcgcgt gcgttcggtc cctgcacggc gacgatcgcg aaatcgcgtc gcggcgtgat
     1921 ggtcagtcca aaaccgcctt cggcattcag atggccgaac cacgcgatgt ctttctcagc
     1981 cgtgccggca ttcacgacga cgcgatagtt gtcatcggcg aagtaataga cgatcaggtc
     2041 atcgatcacg ccgccttccg ggttcagcag gcacgaatag agcgccttgc cgggaacggt
     2101 gagtttgtcg acgttgttgg cgatcgcgta cttgaagaac tcgcgcgctt tgtcgccggt
     2161 gaaatcgacg acgcgcatgt gcgacacgtc gaacatgccc gcgtcggtgc gcaccgcgtg
     2221 atgttcgtcg atctgcgaac cgtaattgac gggcatgtcc cagccgccga aatcgaccat
     2281 gcgtgcgttg agcgcaaggt gagtggcgtg caagggcgtg tgttgaagat cagacatgga
     2341 gcgggcctcg ggcgtgcgcg aa
//
LOCUS       DATGBK010000761         2062 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_240644, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000761 DATGBK010000000
VERSION     DATGBK010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240644"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..1704)
                     /locus_tag="VKJ77_10720"
     CDS             complement(112..1704)
                     /locus_tag="VKJ77_10720"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009898901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HMC45785.1"
                     /translation="MTPIETDLATGDKVDSDWLISSRAALARTQFAPQAETVGRVEHV
                     SDGIASVSGLPDVRLNELLRFEGGRFGFALTLDADAIGAVLLDDGDAISAGSRVTGTG
                     QVVEVPVGPGLLGRVVDPLGRPLDSDEPVPAEKHLPIERPAPSIIDRDLVAQPVATGI
                     LLIDALFAIGRGQRELIIGDRATGKTSIAIDTIVNQKHTDMICVYVAIGQRATAVQRV
                     IDAVRRHGAPERCVFVVASAAASPGLQWIAPFSGMSIAEYFRDRGQHALIVIDDLSKH
                     AATHRELSLLTREPPGREAYPGDIFYLHARLLERAAKLSKELGGGSLTALPVAETDAG
                     NLSAYIPTNLISITDGQIMLDAALFAANQRPAVDVGLSVSRVGGKAQLPALRKVSGRL
                     RLDYSQFLELEMFTRFGGAMEPRVKAQVVRGERIRALITQPRFAPLRPVDEIALLAAL
                     ADGVFDKEPVACIATVRDRLAGHLDAHGGPAASAALVATGTLDEAALSGLVAAVRDLA
                     VQVSAAPAAEAKQETQPEATST"
     gene            complement(1701..>2062)
                     /locus_tag="VKJ77_10725"
     CDS             complement(1701..>2062)
                     /locus_tag="VKJ77_10725"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HMC45786.1"
                     /translation="SQFALDVTARLLDRLPAEARIAGFIDGLARELAALPDATRTQLT
                     GNDEPVHLIVPRALTDDELAACQTAFTQALGHPLQVQVTVDPAVIAGLELEAPHALVR
                     NSFRHDLAGLKTELLSS"
BASE COUNT          369 a          649 c          682 g          362 t
ORIGIN      
        1 ggctgcgcgc ttcacgcgag cgggctgcag cgataccacg cattgcaccg accacggatt
       61 caagcccatg cacgccgttc atgcgcgcct gaacttcgct gagtttattg ctcatgtcga
      121 agtggcctcg ggttgggttt cctgcttggc ctcagccgca ggcgccgcgc ttacctgtac
      181 tgcaaggtcg cgtacggctg cgaccagccc gctcagcgcg gcttcatcca gcgtccctgt
      241 ggcaacgagc gcagcgctcg ccgcaggacc gccatgcgca tccagatgtc ctgcaagacg
      301 gtcgcgaacc gtcgcaatgc aggcgactgg ctccttgtca aagacaccgt cggcgagtgc
      361 ggccagcagc gcgatttcat cgacggggcg tagcggcgca aaacgcggct gcgtgatcaa
      421 tgcgcgaatg cgctcgccgc ggaccacttg tgccttcact ctgggctcca tcgcgccgcc
      481 aaagcgagtg aacatttcaa gctcaaggaa ctgcgaataa tcgagccgca aacgccccga
      541 taccttgcgc aacgccggca attgcgcctt gccgcccacc cggctcacgc tcaggccgac
      601 gtccacggca gggcgctggt tggcggcgaa aagcgcggcg tcgagcatga tctgcccatc
      661 ggtaatcgag atcaggttgg tgggaatata agcggacaaa ttgccggcat cggtctccgc
      721 gactggcaac gcggtgagcg atccgccgcc cagttccttg gacaatttcg ccgcgcgttc
      781 cagcaaccgc gcatgcaggt agaagatatc gccgggatac gcttcgcggc cgggcggttc
      841 gcgcgtgagc agggatagct cgcggtgtgt cgcggcatgc ttgctcaggt cgtcgatcac
      901 gatgagcgca tgttgcccac ggtcacgaaa atattcggcg atggacatac cgctgaacgg
      961 cgcgatccat tgcaaaccgg gggaagctgc ggccgacgcg accacgaaga cgcatcgctc
     1021 gggcgcgccg tggcggcgca cggcgtcgat gacacgctgc acggcggtag cacgctgacc
     1081 tatagccacg tacacgcaga tcatgtcggt gtgcttctgg ttcacgatcg tgtcgatggc
     1141 aatcgaggtc ttgccggtcg cccggtcgcc aatgatcagc tcgcgctggc cgcggccgat
     1201 tgcaaacaac gcgtcgatca gcaggatacc ggtggcgacc ggttgcgcga cgagatcccg
     1261 gtcgatgatg gaaggcgccg gccgctcgat gggcaagtgc ttctcggcgg gcacgggttc
     1321 gtcgctgtcg agtggcctgc cgagcggatc gaccacgcgc ccgagcagcc cgggaccgac
     1381 cggcacttcc accacttgcc ccgttccggt gacgcgagag ccggctgaaa tcgcatcgcc
     1441 gtcgtcgagc agaaccgcgc cgatagcatc ggcgtccagt gtgagcgcaa agccgaaccg
     1501 gccgccctcg aagcgcagca gttcgttcag gcgcacatcg ggcaggccgg agacggaagc
     1561 aatgccatcg gacacgtgtt caacgcgccc gaccgtttcc gcttggggtg caaactgagt
     1621 gcgggcgagg gcggcgcggc tgctgataag ccagtcgctg tctactttgt ctcctgtagc
     1681 gaggtcggtt tcgatgggtg tcatgagctg aggagctccg ttttcaggcc ggcgagatcg
     1741 tggcgaaaac tgttgcgcac gagtgcgtgc ggcgcttcca gttcaagtcc cgcgatcacg
     1801 gcgggatcga ctgtgacctg aacctgcaac ggatggccga gcgcctgcgt gaacgcggtt
     1861 tgacatgctg ccagttcatc gtcggtgagg gcgcgaggca cgatcaggtg caccggttca
     1921 tcgttgccgg tcagttgtgt tcgggttgcg tcgggcagcg cggcgagctc acgcgccagt
     1981 ccatcgatga accctgcgat ccgtgcctcg gcgggcaggc gatcgagcag cctcgccgtg
     2041 acatcgagtg cgaattgcga cg
//
LOCUS       DATGBK010000762         2302 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_171355, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000762 DATGBK010000000
VERSION     DATGBK010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171355"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..1606
                     /locus_tag="VKJ77_10730"
     CDS             224..1606
                     /locus_tag="VKJ77_10730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC45787.1"
                     /translation="MKAVEELWRLAQGTPEALEHLTVSGDELLLPSVYRVSDLAAASV
                     GASALAAAECFRHRTGRQQDVHIYTRRAAIAFRSERYLRIGTDKAPELRDPLMGFYET
                     RDGRWIQLHTNFKHHRDGVIKLLGCANDHAGVMQAIRNWDGARLDDALADAGLCAALI
                     RTPEEWALTPQAHAIAEIPLLEIVKLDDAPPEAIGQAEPQRPLSDVRVLDLSRIIAGP
                     VAGRTLAEHGADVLLINGPHLPNIPPLVIDNGRGKRSATLDLREESGRESLRALLKDA
                     DVFLQGYRPGALAAHGFGPEEAARVRPGIVYVTISAYGHKGPWSQRRGFDSLVQSASG
                     IAWTEAQAAGQTQPRHLPCQALDHATGYLAAFGAMIALQRRATQGGSWHVRVALARTG
                     RWLQSMGLIEDGQNVPDPQLDDVRDMLQTIASPFGSLTCTQPPERMSLTPPFWRSPPV
                     PIGTDQPRWW"
     gene            complement(1616..>2302)
                     /locus_tag="VKJ77_10735"
     CDS             complement(1616..>2302)
                     /locus_tag="VKJ77_10735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC45788.1"
                     /translation="PLYLQLARKLGNAIHDNRWNAGEALPSERVLSEALGVSRITSRK
                     AIALLVEQGLIRRTQGAGSFITPRYEDPLSRLSSFSEMLRRRGFTPGSKWLSRVIEPA
                     NRDEVIQLGLSPAAAVTRLRRLRTADGIVMAVENSTFPAALIPDPQAVGDSLYSFLEQ
                     RNLSIVRALQHFRAVNASEEIAEQMGIAPHDALLLITRVGYTADQRPIELTDTYCRND
                     YYDFVAELRK"
BASE COUNT          442 a          703 c          760 g          397 t
ORIGIN      
        1 aggcggaacg ttcgagcgga ttgtgtcggg catgaaagga gccggcggag ggagtgcggt
       61 gattttacgt ggatgtgtgc acggattgcg taccgatgtg cggcacaatc ggcacgcgga
      121 ttagacggga cgggaaactg ctcaatgtgc tggcgttcga tatcatccag ggtgaacccg
      181 cggacctcgg gtggacgaag cggcattgag aaggagcatg gccatgaaag ctgttgagga
      241 actttggcgc ctggcgcagg gaacccccga ggcacttgaa cacctcacgg tcagcggcga
      301 tgaactgcta ctgccgtcgg tgtatcgggt gagtgacctg gcggcggcga gcgtgggcgc
      361 atcggcgtta gcggcagcag aatgcttcag gcatcgcacg gggcggcagc aagacgtgca
      421 catctacact cgccgcgcgg caatcgcgtt ccgcagcgag cgctacttgc gcattggaac
      481 cgataaagcg ccagagctgc gcgatccgct aatgggtttc tacgagaccc gtgacggccg
      541 ctggatccag cttcatacga acttcaagca tcatcgggac ggtgtcatca agctgcttgg
      601 ctgcgcgaac gatcacgctg gcgtcatgca ggccatccgc aattgggacg gcgcgaggct
      661 ggacgacgcg ctcgccgatg ccggcctgtg cgccgcgctg atccgcacgc cggaggagtg
      721 ggcgctcacg ccgcaggccc acgcgattgc ggaaataccg ctgctcgaga tcgtcaaact
      781 cgacgatgcc ccgccggaag cgataggcca agccgaaccg cagcggcctt tgtcagacgt
      841 ccgcgtgctg gacctgagcc gcatcatcgc gggaccggtt gcggggcgaa cgctcgccga
      901 gcatggtgcc gatgtcctgc tcatcaatgg tccgcatctg cccaacattc caccgttagt
      961 aatcgacaac ggccgcggca agcgctcggc gacgctcgat cttcgcgaag aaagcggccg
     1021 cgaatcgcta cgagcgttat tgaaagatgc cgatgtattc ctgcaaggtt atcgcccggg
     1081 cgcactggca gcacacggct tcggcccgga agaggctgcg cgggtccgcc cgggcatcgt
     1141 gtacgtgacg atatcggcgt atgggcacaa aggtccctgg tcacaacggc gcggcttcga
     1201 cagcctcgtg caatcggcga gcggcatcgc gtggaccgaa gcgcaagcgg ccggtcagac
     1261 acaaccccgg cacttgccgt gtcaggcact cgatcacgcc accggttatc tcgcggcatt
     1321 cggcgcgatg atcgcgctgc aacgacgcgc cacgcaaggc ggaagctggc atgtgcgcgt
     1381 ggcgctggcg aggaccggac gttggctgca atcgatgggt ttgatcgaag acggtcagaa
     1441 cgtgcccgat ccccaactcg acgatgtccg cgacatgctg caaaccatcg cctcgccgtt
     1501 cggttcactg acgtgcacgc aaccgcctga acgcatgtcg ctgacaccgc cgttctggcg
     1561 ctcgccgccg gtgcctatcg gaaccgatca accgcgctgg tggtgactac tgtgactact
     1621 tgcgcaattc cgcgacgaaa tcgtagtagt cgttgcggca gtaggtatcg gtgagttcga
     1681 tcgggcgctg gtcggccgta taccccacgc gcgtgatcag cagcagcgcg tcgtggggcg
     1741 caatgcccat ttgctcggcg atctcttcgc tcgcgttaac cgcgcggaaa tgctgcaggg
     1801 ctctcacgat cgacaggttg cgctgttcga gaaagctgta aagcgaatcg ccgacagcct
     1861 gcgggtcggg aatcagcgcc gccggaaaag tggagttttc aacggccatc acaatgccgt
     1921 ccgctgtgcg caagcggcgc aagcgtgtca cggcagccgc cggcgacaac ccgagctgga
     1981 tcacttcatc gcgattcgcg ggctcgatca cgcgtgagag ccacttcgag ccgggggtaa
     2041 aaccgcgtcg acgcagcatt tcgctgaagc tcgacagccg cgacagcggg tcttcatagc
     2101 gcggcgtgat gaacgaaccg gcgccttgcg tgcgtcggat cagtccctgt tcgaccagca
     2161 acgcgatcgc tttacgcgac gtgatccgcg ataccccgag cgcctccgac aacacgcgct
     2221 ccgagggcag cgcttcgccc gcgttccagc ggttgtcgtg gatcgcgttg ccgagcttgc
     2281 gggcgagctg gagataaagc gg
//
LOCUS       DATGBK010000763         2324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_32938, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000763 DATGBK010000000
VERSION     DATGBK010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32938"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VKJ77_10740"
     CDS             <1..359
                     /locus_tag="VKJ77_10740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015600266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HMC45789.1"
                     /translation="LDAKKGLKMFEKVGIPILGIVENMSTHICSNCGHEEHIFGAGGG
                     ERMSKEYGVPVLGHLPLDIAIRERTDAGQPTVISEPDSKIAEAYRSIARKVAISIAER
                     QRDMTSMFPSIVVQNT"
     gene            582..1055
                     /locus_tag="VKJ77_10745"
     CDS             582..1055
                     /locus_tag="VKJ77_10745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HMC45790.1"
                     /translation="MLLGGCGLLFQNHEKRADATLQPTGGNMVTGTVTFIERADGVQV
                     SYNLSGMPPNSEHALQIHERGDCIIPASSDVGPVFAPASERSDSGSKVEGDLASIRAD
                     ANGTATGFIVAPDVSLDGVRSVLSRAIVLHRDTADGYAMVPHGAGPALACGVIRQ"
     gene            complement(1059..1190)
                     /locus_tag="VKJ77_10750"
     CDS             complement(1059..1190)
                     /locus_tag="VKJ77_10750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45791.1"
                     /translation="MQKHAEASQTRREAGILLDAPAARRGYANWPGHAPQQPDFIER"
     gene            1272..1841
                     /gene="dcd"
                     /locus_tag="VKJ77_10755"
     CDS             1272..1841
                     /gene="dcd"
                     /locus_tag="VKJ77_10755"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006398615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HMC45792.1"
                     /translation="MSIKSDKWIRRMAEAHNMIEPFVRDQVRVSEDGRKIVSYGTSSY
                     GYDIRVADEFKIFTNINSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIP
                     RSCLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYANEGVAQVLF
                     FESDEICETSYADRGGKYQGQIGVTLPKT"
     gene            1946..>2324
                     /locus_tag="VKJ77_10760"
     CDS             1946..>2324
                     /locus_tag="VKJ77_10760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006491304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Orn/Lys/Arg decarboxylase N-terminal
                     domain-containing protein"
                     /protein_id="HMC45793.1"
                     /translation="MKFRFPVVIIDEDFRSENISGSGIRALAEAIEGEGVEVLGLTSY
                     GDLTSFAQQSSRASCFILSIDDDELLPYADNNVVLAEGDTPELASAIVALRAFVQAVR
                     RRNADIPIFLYGETRTSRHLPNDI"
BASE COUNT          455 a          687 c          707 g          475 t
ORIGIN      
        1 tgctcgacgc caagaagggc ttgaagatgt tcgagaaagt gggcatcccg atcctgggga
       61 tcgtggagaa catgagcacg catatctgct cgaattgcgg ccacgaagaa catatcttcg
      121 gcgcgggcgg cggcgagcgg atgtcgaagg aatatggcgt gccggtgctc ggccacttgc
      181 cgctcgatat cgcgatccgc gagagaaccg atgcgggcca gcctacagtg atctcggagc
      241 cggacagcaa gattgccgag gcctatcgat cgatcgcgcg caaggtcgct atttcgattg
      301 ccgaacgcca gcgcgacatg acgtcgatgt tccccagcat cgtagtgcaa aacacttagg
      361 ccgcacgagg acgcgggcga ttttcgcggc gcgtgtcgcg gtatcatgtc gccttgattg
      421 gcgcggccag gtgaacacac ggggtggtcg cgggtcgcca tgaggatcgc atgaaacaaa
      481 gattcgacgg gcctgaatcg cgcagactgc ctgccgcgag acacccggtc ccgagcttga
      541 tactgagttt gagcacgact gtcagcgtgt tggccagtgt catgctgctc ggcggctgcg
      601 gccttctgtt ccagaaccac gaaaaacgtg ccgacgccac attgcagcct accggcggca
      661 atatggtgac aggcacggtc acgttcatcg aacgcgcaga cggcgtccag gtgtcttaca
      721 acctgtcggg aatgccgccc aatagcgagc acgcgctgca gattcatgaa cgcggcgact
      781 gcatcatccc ggcctcgtcc gacgtcggac ccgtattcgc gcccgcgtcc gagcgcagtg
      841 attccggctc caaggtggaa ggcgacctgg ccagcattcg tgccgacgcg aatggcacgg
      901 cgactggttt catcgtcgcg ccggacgtgt cgctcgacgg cgtgcgctcg gtgttgtcgc
      961 gggccatcgt gcttcatcgc gacaccgcgg acggctacgc catggttccg cacggcgccg
     1021 gtcccgccct cgcgtgcggc gtgatccggc agtgatcttc atctttcaat gaaatcaggc
     1081 tgttgcggcg cgtgacccgg ccagttggca tagccgcgtc gcgcagccgg cgcatcaagt
     1141 aaaatacccg cttctcgtct ggtctggctg gcttcggcgt gcttctgcat tcatcccgag
     1201 tctccggcca cgccctgttt caagcccggc ggcctctctc aagccgcctc tttcgttggg
     1261 tagcgttccc tatgagcatc aagtccgaca agtggatccg gcgcatggcc gaagcgcaca
     1321 acatgatcga gccgttcgtg cgcgaccagg tgcgagtgtc cgaagatggc cgcaagatag
     1381 tgagctatgg cacgtccagc tacggttatg acattcgtgt ggcagacgaa ttcaagatct
     1441 tcaccaacat caattcgacg attgtcgacc cgaagaattt cgacgagaaa tcgttcgtcg
     1501 acttcaaggg cgacgtctgc atcatcccgc cgaactcctt cgcgcttgcg cggacggtcg
     1561 aatatttccg gattccgcgc tcgtgcctga cggtttgtct cggcaagtcc acctatgcgc
     1621 gctgcgggat cattgtgaac gtgacgccgt tcgagcccga atgggaaggg tatgtgacgc
     1681 tcgaattctc gaatacgaca cctttgcctg ccaaaatcta cgcgaacgaa ggcgtggcgc
     1741 aggttctctt ctttgaaagc gatgagatct gcgagacctc atacgccgat cgtgggggca
     1801 agtatcaagg gcaaatcggc gtaacgctgc cgaaaacctg acgtttcttg attgttagaa
     1861 acgtcattgc aacgcttttt gaaagaccgc tggagtcgag cacgcacaac tcgaccagcg
     1921 gtcgttccat ttggagattc gccgcatgaa gttccgtttt cccgtcgtca tcatcgacga
     1981 agattttcgc tccgagaaca tttcgggttc tggcatccgc gcccttgccg aagcgatcga
     2041 gggcgaaggc gtcgaggtgc ttgggctgac gagttacggc gacctgacgt cgtttgcgca
     2101 gcaatcgagc cgcgcgtcgt gcttcatcct gtcgatcgac gacgacgagt tgctgccgta
     2161 cgcagacaac aacgtggtgc tggccgaagg ggatacgccg gagctggctt ccgcgattgt
     2221 cgcgttgcgc gcgttcgtgc aggcagtgcg acgacgaaat gcggatatcc ccatcttcct
     2281 gtacggcgaa acgcgcacgt cgcggcattt gcccaacgac attc
//
LOCUS       DATGBK010000764         1659 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_240677, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000764 DATGBK010000000
VERSION     DATGBK010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240677"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..980)
                     /locus_tag="VKJ77_10765"
     CDS             complement(<1..980)
                     /locus_tag="VKJ77_10765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006406581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45794.1"
                     /translation="MAVHTAEHHSAGQVLPFRESLMAMLGVCFVTMLVALDQTVVGTA
                     LPTIVAELRGFDLYAWVATSYLLTSVITVPIFGRLGDYYGRKPFVIASIVVFTVASAL
                     CGLANNMLFLVLARGLQGIGGGMLVGTAFACIADLFPDSVVRLRWQVMMSSAFGIANA
                     VGPSLGGILTQYYGWRSVFYVNLPVGLLSVFFVWRFLPHLRHVKHEGKMRLDWQGAGL
                     IAIALGSLQLFVEMLPKHGLSAESLMLLVASVASSYALWKWERRCDYAILPVDMFRNK
                     SLSALFTLAILGGFTMFSLLFYAPLLFQGGFGMSPKDAGLMITPLVVFIT"
     gene            1087..>1659
                     /locus_tag="VKJ77_10770"
     CDS             1087..>1659
                     /locus_tag="VKJ77_10770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EcsC family protein"
                     /protein_id="HMC45795.1"
                     /translation="MEPTPIAASPLSQEDLATLRRAKEALESPSLTMKLASVVGSPIE
                     KLMARMPNVAQEKIDDATQAALKKCLQLALRTLSKSTVDGVVLPPEKPHNLMHKLAVA
                     TTGAAGGAFGLFALPVELPVTTTLMFRSICDIARSEGEDVHLIDTQLQCMMVLGMGGP
                     SSSDDAADIGYFIVRGTLAQSVSKATSEIAT"
BASE COUNT          413 a          496 c          487 g          263 t
ORIGIN      
        1 atcgtaatga acaccaccag cggcgtgatc atcaggccgg cgtctttcgg cgacatgcca
       61 aaaccgccct ggaacagcaa aggcgcgtaa aacagtagcg aaaacatggt gaaaccgccg
      121 agaatcgcca gcgtaaagag cgcagacagg ctcttgttgc ggaacatatc gacgggaaga
      181 atggcgtagt cgcagcgccg ttcccacttc cagagcgcat agctggacgc aacgctggcc
      241 acgagcagca tcagcgactc cgccgacagc ccgtgcttcg gcaacatttc gacaaacaat
      301 tgcagcgaac cgagcgcaat tgcgatcagg cccgcgcctt gccagtccag acgcatcttg
      361 ccctcgtgct tgacgtgccg aagatgcgga aggaagcgcc agacgaaaaa caccgacagc
      421 aggccgaccg gcagattcac gtagaacacg gagcgccaac cgtagtattg cgtcaaaatc
      481 ccgccaagcg agggccccac cgcattcgca ataccgaacg ccgaactcat catcacctgc
      541 caccgtagac gcacgacgga atcaggaaac agatcggcaa tgcacgcaaa cgcggtcccg
      601 accagcatgc cgccgccaat gccctgaagg ccgcgcgcga gcacgaggaa caacatgttg
      661 ttggcgagac cgcagagcgc ggacgcgacg gtgaacacga cgatagacgc gatcacgaac
      721 ggtttgcggc cgtaatagtc gccgagccgg ccgaagatag gcacggtgat gacggacgtg
      781 agcaaatacg aggtggcgac ccaggcgtaa aggtcaaaac ccctgagttc ggcaacgata
      841 gtgggcaatg ccgtcccgac cacggtttga tcgagcgcga ccagcatggt cacgaagcag
      901 acgcctaaca tcgccatgag cgattcgcga aacgggagca cttgtcccgc ggagtggtgc
      961 tcggcagtat gaacggccat ctttttgata ccgcaatgat tgacttgtca acagaatgtg
     1021 aatcatagca cggtgaaagg ctctaatcca aggccagacg cctcctcaac cttttctaaa
     1081 attgccatgg aaccgacgcc aatcgccgct tcgcccctct cgcaggaaga tctcgcgacc
     1141 ctgcgccgtg ccaaggaagc actggaaagc ccgtcgctta cgatgaaact ggcgagcgtg
     1201 gttggctcgc ccatcgaaaa gctgatggcg cggatgccga acgtcgcgca ggagaaaatc
     1261 gacgatgcaa cccaggccgc gctcaagaaa tgtctgcaac tcgcgctgcg cacgctcagt
     1321 aagagtacgg tcgacggcgt cgtgctgcca cccgaaaaac cacacaactt gatgcacaag
     1381 ctggcggtcg cgaccactgg agcggctggc ggagcatttg ggctgttcgc gttgccggtg
     1441 gaattgcccg tcacgaccac gctgatgttc cgttcgatct gcgacattgc gcgcagcgag
     1501 ggcgaagacg tgcatctcat cgacacccag ttgcaatgca tgatggtgct cggcatgggc
     1561 gggcccagtt cgagcgacga tgccgccgat atcggctatt tcattgtgcg tggaaccttg
     1621 gcgcagtcgg tatcgaaggc gacgagcgag attgcgacg
//
LOCUS       DATGBK010000765         1586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_124970, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000765 DATGBK010000000
VERSION     DATGBK010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124970"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1063
                     /locus_tag="VKJ77_10775"
     CDS             <1..1063
                     /locus_tag="VKJ77_10775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC45796.1"
                     /translation="IPRLRSLLARIPRPYELTEEVRALRSTLRELGYFGGLLGRSGAI
                     QHVYDLMEHTAPTEAAVLICGESGTGKKVAARTLHEMSRRRKGPFVSFNCAAANETSN
                     RSMESLMFGHERGAFAGAENREPGLLEQAGGGTLFLDQIDALPIPQQEALLRALDSQT
                     FMRVGGSNKIVTDFRLLAATRTPVKDAVADGKLREDLFLRLNASSIALPPLRDRGDDI
                     ALLAEHFVDELNRENHVSGITSGAPKRVSPDFIRECLATEWPGNVRELRERVRRAYHA
                     SGDVIETLRADEQGGASGRGLNGSSVQVTVGTALADVEDMLIRATLEAVGGTRHRAAT
                     LLGISPKTLYNKLQRMKLE"
     gene            complement(1168..>1586)
                     /locus_tag="VKJ77_10780"
     CDS             complement(1168..>1586)
                     /locus_tag="VKJ77_10780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HMC45797.1"
                     /translation="DWLGMSLASVIPAHVIYPQVDEKPAGFSRVWLQDILRGKLGFNG
                     AIFSDDLSMEAARAGGTLTEAATAALTAGCDMVLICNQPDEAEKVLDRLTFVQTKASQ
                     TRLRRMRPRGRAWRWGKLMAQVEYQQALALVKSALG"
BASE COUNT          290 a          508 c          504 g          284 t
ORIGIN      
        1 cattccgcgc ctgcgcagct tgctcgcccg tatcccgcgc ccctacgagt tgacggaaga
       61 agtgcgggcg ttacgctcca cgctgcgcga actcggctat ttcggtggat tgcttgggcg
      121 cagcggtgcg atccagcacg tctacgatct gatggaacat accgcgccca ccgaggcggc
      181 cgtgttgatc tgcggcgaaa gcggcaccgg caagaaagtc gccgcacgta cgctgcatga
      241 aatgagccgg cgccgcaaag gcccgttcgt ttcgttcaac tgcgctgcgg ccaacgaaac
      301 cagcaatcgt tcgatggaaa gcctgatgtt cggccacgaa cgcggtgcgt ttgccggcgc
      361 ggaaaaccgc gaacccggct tgctcgagca agcgggtggc gggacgctgt tcctcgacca
      421 gatcgatgca ttgccgatcc cgcagcagga agcgctgctg cgcgcgctcg attcgcagac
      481 cttcatgcgc gtgggcggca gcaacaagat cgtgacggac ttccgcctgc tcgccgcgac
      541 gcgtacgccg gtgaaagacg ccgtcgccga cggcaaattg cgcgaggatc tgttcctgcg
      601 gctgaatgcg tcgtcgatcg ccttgccgcc cttgcgcgac cggggcgacg acattgcgtt
      661 gctggccgag catttcgtcg atgaactgaa tcgcgagaac cacgttagcg gcatcacgag
      721 cggcgcgccc aaacgcgtta gcccggattt cattcgcgag tgcctggcga ccgaatggcc
      781 cggcaacgtg cgcgaactac gcgagcgggt acgccgcgcg tatcacgcat ccggcgatgt
      841 catcgaaact ttgcgcgccg atgagcaagg tggtgcaagc gggcgtggtc tgaacggcag
      901 cagcgtgcag gtgacggtgg gcacggcgct cgccgatgtc gaggacatgc tgattcgtgc
      961 aacgctggag gcggtgggtg gcacgcggca ccgcgcggcg acgctactcg ggatcagccc
     1021 gaagacgctt tacaacaagc tccagcgcat gaagctggag tgatttagag gttggttgaa
     1081 acgggccgct cgttctttcg ttttagaacc agcggctttt tttacggcgg ctgcgctcat
     1141 gcgcactcgc ctacgttaga aagcccatca gcccagcgcg cttttcacca gcgcaagcgc
     1201 ctgctgatat tccacctgcg ccatgagctt gccccagcgc cacgcacggc cccttggccg
     1261 catccgccgc aagcgggtct gcgatgcctt cgtctgcacg aacgtaagcc ggtccagcac
     1321 cttctccgct tcgtccggtt gattgcagat cagcaccatg tcgcagccgg ccgtgagcgc
     1381 cgccgtggcc gcttcggtca gcgttccgcc ggcgcgggcg gcttccatcg aaagatcgtc
     1441 gctgaaaatc gcgccgttga aaccgagctt gccgcgcagg atgtcctgca gccagacgcg
     1501 cgaaaagccc gcgggtttct catcgacttg ggggtaaatc acgtgcgccg gaatcaccga
     1561 cgccaaggac atgcccaacc agtcgt
//
LOCUS       DATGBK010000766         3695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147810, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000766 DATGBK010000000
VERSION     DATGBK010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147810"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..695)
                     /gene="maiA"
                     /locus_tag="VKJ77_10785"
     CDS             complement(51..695)
                     /gene="maiA"
                     /locus_tag="VKJ77_10785"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009902749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016034 - maleylacetoacetate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HMC45798.1"
                     /translation="MKLYSYFRSSAAYRVRIALNLKGLAYEYAPIHLLRDGGQQLKPE
                     YRELNPDGIVPTFIDGADVLTQSLAIIEYLEETHPEPALLPGTPLDRAFIRSVALQIA
                     CEIHPVDNLRVLKYLKHTLKVGDEAKDAWYRHWLESGFESLEKRLANDSRVGKLCFGD
                     TPTLADLCLVPQVYNARRFNLDVSRYPTIERIADHAGQIDAFARAAPGQQPYAE"
     gene            complement(717..1415)
                     /locus_tag="VKJ77_10790"
     CDS             complement(717..1415)
                     /locus_tag="VKJ77_10790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HMC45799.1"
                     /translation="MSHVFAPAPAVAVPVVGSSDQFPVRRIYCVGRNYEAHAREMGHD
                     PDREPPFFFGKPADAVLYVAPGATGEFPYPSQSKNVHFEMELVAAIGKQGKDIPADKA
                     LDYVYGYALGLDMTRRDLQAEAKKLGRPWDTAKGFDHSAPLGPIHPAALVGHLEKSAI
                     WLTVNGEDKQRSDISQLIWSVGDTIAYLSTLFELFPGDLIFTGTPEGVGAIQKGDLMK
                     GGVDGIGEFSVRVV"
     gene            1790..2749
                     /gene="ybiB"
                     /locus_tag="VKJ77_10795"
     CDS             1790..2749
                     /gene="ybiB"
                     /locus_tag="VKJ77_10795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein YbiB"
                     /protein_id="HMC45800.1"
                     /translation="MTDTTPFPCARFIKEIGRGPNGARALTREDTYALYEAMLDNRVS
                     DLELGAVLLAYRVKGETAAELAAMLAAAHRSFEPLHIQNGRDHARPVSIPTYNGARKQ
                     PNLTPLLALLLAREGVPVLVHGVTTDPGRVTSAAIFAELGIPESTSHDEIEDNLASRR
                     LAFAPIAVLAPKLARLLAIRRIMGVRNSTHTLVKILQPFAQPGLRLVNYTHPEYRESL
                     TGLFTEHPDAAAGGALLARGTEGEAVADTRRQVQVDWFHEGHTETLISAERSSPDAPV
                     VALPEALDAATTARWIETVLRGEAPIPPALARQAELIADIVRR"
     gene            3192..>3695
                     /locus_tag="VKJ77_10800"
     CDS             3192..>3695
                     /locus_tag="VKJ77_10800"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019254946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HMC45801.1"
                     /translation="MMRNPSEKYRPFPQVNLNGRRWPTRTIERAPIWMSTDLRDGNQA
                     LIDPISIEAKLEFFEMLVAVGFKEIEVGFPSASQTDFDFVRKLIVENRIPAGVTIEVL
                     VQSRRELIERTFEAVEGAPQVIVHLYNAISPSFRKIVFAQSKEETKALAVEGTGIIKE
                     CAAARPGT"
BASE COUNT          735 a         1197 c         1074 g          689 t
ORIGIN      
        1 gataatcaaa cttgcgccga gcccggcgcc ggatagaaaa actgctgtcg tcattcggcg
       61 tacggttgtt gccctggcgc ggcgcgcgcg aacgcatcga tttgcccggc gtgatcggcg
      121 atacgttcga tcgtcggata acggcttaca tcgagattaa aacgccgcgc gttgtacacc
      181 tgaggcacga ggcaaagatc cgcgagcgtg ggggtatcgc cgaaacacag cttgcccacg
      241 cgcgagtcgt tcgcgagccg cttttccagc gactcgaaac ccgattccag ccaatgccgg
      301 taccacgcgt ctttcgcttc gtccccaacc ttcagcgtgt gcttcagata cttcagcacg
      361 cgcaggttgt cgaccggatg gatctcgcac gcaatctgaa gcgcgaccga acgaatgaac
      421 gcacgatcca atggcgtgcc cggcaacaac gctggctctg gatgtgtctc ttccagatat
      481 tcgatgatcg caagcgactg tgtgagtacg tcagcgccgt cgataaacgt cggcacgatc
      541 ccatccggat tcagctcgcg atactccggc ttcagttgtt ggccgccgtc gcgcagaaga
      601 tggatcggcg cgtactcata ggcgagtcct ttgagattca gcgcgatccg cacgcggtac
      661 gccgcagagc tacgaaaata gctgtatagc ttcatggatc ccctccgttt ttatagtcag
      721 accacgcgca cggagaactc tccgattccg tcgacaccgc ccttcatcaa gtcgcccttc
      781 tgaatggcgc cgacgccttc aggcgtgccg gtgaaaatca agtcgccggg gaacaactcg
      841 aatagcgtgg acagatacgc gatcgtgtcg cccacggacc agatcagttg cgagatgtcg
      901 gatcgctgtt tatcttcgcc gttgacggta agccagatcg cgcttttttc cagatgcccg
      961 accaacgcgg ccggatgaat cggacccagc ggcgccgagt gatcgaagcc cttggccgta
     1021 tcccacggac ggcctagctt ctttgcttcg gcttgcaggt cgcggcgcgt catatcgaga
     1081 ccgagcgcgt agccatacac gtagtcgagc gctttgtccg cgggaatgtc cttaccttgc
     1141 ttgccgattg cggccacgag ttccatctcg aagtggacgt tcttcgactg cgatggatac
     1201 gggaattcgc cggtcgcacc gggcgcgacg tacagcacgg cgtcggcggg cttaccgaag
     1261 aaaaacggcg gttcacgatc ggggtcgtgc cccatctcgc gcgcgtgcgc ctcgtagttc
     1321 cgtccgacgc aataaatccg gcgaacggga aactggtcgc tggaaccgac gacaggcacc
     1381 gcgaccgcgg gtgccggagc aaatacgtga ctcattgcgt tttctcctgt ttgatgaagc
     1441 atcgacctga acctcaagtt taacgtgcac ggttgcgcat cgcgattcgg ctgaatggcc
     1501 tatgggcccc agggcatggc gtggcaaagc acgcaggagc gcgccgcaag gtctgctatt
     1561 cccgtgagcg gtcctaagtc cataagcccc gatcgtcgaa caaacgaacg ggcaagcacc
     1621 ccgaaaacca tccgccgaac cggccggcga cttgcaagcc cggctcaaat gcggtactga
     1681 atgtgattcc tgtatttcca gaattgcagc gggcgagtct gcacaaggcg atgcgattga
     1741 acacctcgat tgaacactcc ttgtgccagc cgcccgctca gaccaatcaa tgaccgacac
     1801 aacccccttc ccatgcgccc gtttcatcaa ggaaatcggc cgcgggccaa acggcgcacg
     1861 agcgttgacc cgcgaggaca cgtacgccct ctacgaagcg atgctcgaca accgcgtctc
     1921 cgatctcgaa ctcggcgccg tgttgctcgc gtatcgggtg aaaggcgaga cggccgcaga
     1981 actggccgcg atgctggcgg ccgcgcatcg ctcgtttgaa ccgctgcata tccagaacgg
     2041 ccgcgaccac gcgcgccccg tctccatccc cacctataac ggcgcgcgca agcagccgaa
     2101 cctcaccccg ttgctggcgt tgctgctcgc gcgggaaggt gtgccggtgc tcgtgcatgg
     2161 cgtaacgact gaccctggcc gcgtaacaag cgccgcgatt tttgccgagc tgggcattcc
     2221 ggaatccaca tcccacgatg aaatcgagga caacctggcc tcgcggcggc tggcgttcgc
     2281 gccgatcgcc gtgctcgcgc ccaagctcgc acgcctgctc gcgatccggc ggatcatggg
     2341 cgtgagaaat tccacccata cgctggtcaa gatcctgcaa ccgttcgcac agcccggttt
     2401 gcggctggtg aactacaccc atccggagta tcgcgagagc ctgacgggac tgttcaccga
     2461 gcatcccgat gcagccgccg ggggcgccct gctcgcacgc ggcacagagg gtgaagcggt
     2521 ggcggacacg cgccggcaag tgcaggtgga ctggttccac gaaggccaca cggaaacgct
     2581 gatatcggcg gagcgctcct cgccggacgc gcccgtggtg gcgttgcccg aggccctcga
     2641 tgccgcgacc acggctcgct ggatcgaaac cgtactgcgc ggcgaagcac ctattccgcc
     2701 cgcgctcgcg cgccaggcgg agctgattgc ggacatcgtg aggcggtagg cattcttcag
     2761 tcgagaaacc gttgctgttg acaaaagcgc gcgccctgcg ctaatgtgca gaaatgagct
     2821 ttacccaatt cccctccctt cgaattactc agggtcgcct agcgcggccc ctatcgctac
     2881 gtctagcgta agtcgctaaa cgtggcgccg cgcgttcctc gcgcggtccc tcctgcagtt
     2941 tcgtagctcc ccttttttta ccacccgtag tcgtctgctt tcgtccgttc atccacggca
     3001 cgaaaacgcg aggatcacat gcacgctgca tttgcatcgt tcacgttcgt caccggcgtc
     3061 acccacgcca tgggatgtcg cgaacctgac cagcgcgcat tggaacgatg ccggcaagcc
     3121 gccggccaag catccgcctc gcaacgactg cgctttcacg cgtacaacgc gttcagccga
     3181 ggcccacgat gatgatgcgc aacccttccg agaaataccg ccctttcccc caggtcaacc
     3241 tcaacggccg ccgatggccc actcgcacga tcgagcgcgc acccatctgg atgagcaccg
     3301 atctgcgtga cggcaatcag gcgctgatcg acccaattag cattgaagcc aagctcgagt
     3361 tcttcgagat gctggtggca gtgggtttca aggaaatcga agtgggcttc ccgtcggcat
     3421 cgcagacgga tttcgacttc gtacgcaagc tgatcgtgga gaaccgcatc cccgccggcg
     3481 tcaccattga agtgctcgtg cagtcgcgcc gcgaactcat tgagcggact tttgaagcgg
     3541 tggaaggcgc cccccaggta atcgtgcacc tgtacaacgc gatctcgccg tcgtttcgca
     3601 agatcgtctt cgcgcagtcc aaggaagaaa ccaaggcgct cgccgtggag ggcacgggca
     3661 tcatcaagga atgcgccgcc gcgcgccccg gcacg
//
LOCUS       DATGBK010000767         2457 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_101720, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000767 DATGBK010000000
VERSION     DATGBK010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101720"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1132
                     /locus_tag="VKJ77_10805"
     CDS             <1..1132
                     /locus_tag="VKJ77_10805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HMC45802.1"
                     /translation="HSALWHSESGIAPPKRVVIGDDQMTADSAYRLACEGTAILWRGD
                     FQNARQLLQAVTRRIETRPKKSAKAKAKERSAAPDAPPAAPPAPAEAFNLHRLAQSQR
                     ARTLGMLLLPLDAEYAIPLRRAPVVKEACEEAYGSAAGESVVSLREVLGLVGAHEWRK
                     KGVDVEALGARIHPYYGVFSPVRGEYIKLIADQPLPSKELAFDIGTGTGVLAALLAQR
                     GVKRVIATEIDTRALACARENIELLGYDQQVKVLEADLFPEGRAPLIVCNPPWLPARP
                     SSAIEHAIYDPESRMLRGFLDGLAAHLTPGGEGWLILSDIAEHLGLRTRAEFQEWVDR
                     AGLKTDGRMDIRPHHPRAADKTDPLYHARSAEVTSLWRLVPA"
     gene            complement(1178..2431)
                     /locus_tag="VKJ77_10810"
     CDS             complement(1178..2431)
                     /locus_tag="VKJ77_10810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03862 family flavoprotein"
                     /protein_id="HMC45803.1"
                     /translation="MPSPSSSSEIRCARVAVIGGGPAGLMAAEALAAGGVEVDLYDAM
                     PSVGRKFLMAGKGGMNLTHSEPAELFLSRYAERRTQIEPLLRRFDATALRAWVHGLGV
                     ETFVGSSGRVFPTDMKAAPMLRAWLHRLRGSGVRFHMRHKWVGWGDEASRDLRFATPE
                     GERSVEADAVVLALGGASWPRLGSDAAWIPHLEARNVGVSPLKPSNCGFDIDWSEHFS
                     SRFAGEPLKAVAIGLPREEGGIDWRTGECLLTSTGIEGSLIYAMSARIRDRLAAGDGA
                     FSLDLLPALTPQRVHDEVTHPRGARSMSSHLQSRLNLTGAKAGLLREVLSREDFADTT
                     RLAQRIKALPLTVTRPRPLAEAISSAGGVRFESLDSHLMLDALPGVFCAGEMLDWEAP
                     TGGYLLTACFASGLVAGEAALAYVK"
BASE COUNT          476 a          804 c          757 g          420 t
ORIGIN      
        1 ccattcggcg ctctggcact cggaaagcgg aatcgcgccg cccaaacgcg tggtgatcgg
       61 cgatgaccag atgaccgccg actccgccta tcggctcgct tgcgaaggca cggcaattct
      121 ctggcgcggt gatttccaaa atgcacgcca gttgttgcag gcggttacac gacgcatcga
      181 aacgcggccg aaaaagtccg ccaaagccaa agcgaaggaa cgcagcgccg cccccgatgc
      241 accgccggcc gcgccacccg ctcctgcaga ggcattcaat ttgcatcggc tcgcccagtc
      301 ccagcgggcg cgcacgctcg gcatgctgct gttgccgctg gacgccgaat acgccattcc
      361 gctgcgccgt gcaccggttg tgaaggaggc gtgtgaagag gcgtatggct cggccgccgg
      421 tgagtcggtc gtgtcgctgc gtgaggtgct cgggctggtc ggcgcacacg agtggcgcaa
      481 aaagggtgtg gacgtcgagg cactcggcgc gcggattcat ccttactacg gtgtgttttc
      541 gccggtgcgc ggcgagtaca tcaagctcat cgcggatcag ccgttgccat cgaaggaact
      601 ggctttcgat atcggcaccg gcacgggcgt gcttgctgcc ttgctggccc agcgcggcgt
      661 gaagcgtgtg atcgcgacgg aaatcgatac ccgggcgctg gcctgcgcgc gcgaaaacat
      721 cgaattattg gggtacgacc agcaagtgaa ggtgctcgag gccgacctgt ttccggaagg
      781 ccgtgcgcca ttgatcgtct gcaatccgcc gtggctgccg gcccggccca gttcggctat
      841 tgaacacgcc atctacgatc cggaaagccg catgctgcgt ggatttctcg acggcctcgc
      901 cgcgcatctg acgccgggcg gcgaaggctg gctgattctt tcggatatag cggagcatct
      961 tggcctgcga acgcgtgcgg aattccagga gtgggtcgac cgcgccggac tgaagacgga
     1021 cggccggatg gatattcgtc cgcatcaccc ccgcgccgcc gataaaaccg atccgcttta
     1081 tcacgcgcgt tcggccgagg tcacgtcgtt gtggcgcctt gtgccggctt gagtttcttc
     1141 tttggcagtg ggtgttgcag cgggctttat gcccgcatca cttcacataa gccagcgccg
     1201 cttcgcccgc caccaaaccg ctcgcgaaac acgccgtgag cagataaccg cccgtcggcg
     1261 cttcccaatc cagcatctcg cccgcgcaga agacgccggg cagcgcgtcg agcatcaggt
     1321 gcgaatcaag cgactcgaac ctcacgccgc ccgcactgct gatcgcctcg gcgagtggcc
     1381 ttgggcgcgt cacggtcagc ggcaacgcct taatacgctg agcgaggcgc gtggtatcgg
     1441 cgaaatcttc gcggctcaac acctctcgca gcaaacccgc tttcgcgccc gtcaggttca
     1501 ggcggctctg caagtggctc gacatggaac gagcgccgcg cggatgcgtt acttcgtcgt
     1561 gaacacgctg cggcgttaga gccggcagga gatcgaggga aaacgcgcca tcgccggcag
     1621 ctaggcgatc gcgaatacgc gcggacatcg cgtagatcag gctgccttca atacctgttg
     1681 atgtcagcaa acactcaccc gttcgccaat cgatgccacc ctcttcccgc ggcaggccga
     1741 tcgccacggc tttcagcggc tcgcctgcaa aacgactgct gaagtgctcg ctccagtcga
     1801 tatcgaaacc acaattcgac ggcttgagcg gcgatacacc cacattgcgc gcttccaagt
     1861 gaggaatcca cgcagcgtcc gacccaagtc gtggccaact cgcgccgccg agcgcaagga
     1921 cgacggcatc ggcctccacc gagcgctcgc cttccggcgt ggcaaaccgc aaatcccgcg
     1981 aagcttcgtc accccagcca acccacttat gccgcatatg gaaccgtacg cccgacccgc
     2041 gtagccgatg caaccaggca cgtagcatcg gcgcggcttt catgtcggtg ggaaatacgc
     2101 ggcccgaact gccgacgaag gtttccacgc ccaatccgtg aacccatgcg cgtaacgcgg
     2161 tggcatcgaa acggcgcagc agcggttcaa tttgtgtccg gcgctccgca taacgcgaga
     2221 ggaatagttc ggcgggttcc gaatgcgtga gattcatgcc gcccttgccc gccatgagga
     2281 acttacggcc gaccgacggc atggcgtcat acagatccac ttctacaccg cccgccgcca
     2341 gcgcttccgc agccatcaag ccagcagggc caccgccgat aacggcaacg cgcgcgcaac
     2401 gaatttctga ggaggaggac ggtgacggca tgcggaggga gacgattgaa agcgaag
//
LOCUS       DATGBK010000768         2633 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_33027, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000768 DATGBK010000000
VERSION     DATGBK010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33027"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1802
                     /locus_tag="VKJ77_10815"
     CDS             <1..1802
                     /locus_tag="VKJ77_10815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC45804.1"
                     /translation="HDLLGMIDDILDMAKIEAGRLVLTSAPLEFGEWVKSVVAIYEPA
                     ARSKGIALVVRERGRQEHERVWVMADGLRLRQVLGNLLSNAIKFTDAGQVTLEYAIGA
                     ARTGHAHSPLDADARVAHRELLLAVSDTGIGIAADQQALLFAPFAQARQERPGRFGGT
                     GLGLTICRRLMTMMGGTIRLSSKPGQGSRFTARVRLPVARPPLETLAPAITPELDTHD
                     VIGLHVLVVDDHPANRILLASQLNTLGCVIETANDGGAAFARWERQRQEGAPFDLILT
                     DCSMPTMSGEDLARAIRARERALTRANADPKLTPIIGVTANAQPEALTQALDAGMTLC
                     LVKPLGLDALHRALVLAMQDERGPKAAALSDALPIATLATLATRAGHPRPPSDSRSFF
                     DRVLGAAPMHMSTASIGSARSIAPDRAHADTYGPTQNFPANRAAGRAVSAALNMSVSH
                     PGQLNGAFDGPSDTASETVQAVDHVAMEPGTVTRPSTVPRFNVDQLNGFGDQAAALVD
                     ALKTANRQDLDEARRAFASADFHRLLELTHRMKGAAFVIGATSFSDACLSLQHACALE
                     PGQGYDTVAIRAAYLRFHDEAITLDTALEQHSA"
     gene            1967..2482
                     /locus_tag="VKJ77_10820"
     CDS             1967..2482
                     /locus_tag="VKJ77_10820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017778301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45805.1"
                     /translation="MNRRFLSHHRYRRHSRRRVATVWFLLALSAGGVPVHAQKPELLD
                     PRVTQSTIVDTICRPGYADDVLPPFDTLQRQKEQLLSQRHVDPLSAADYALDHRMPIL
                     LGGSPTAAANLDIRRWDGRAGQRRKERLAVFLKRCVCTGDMPLAAAQAAMSGDWPSRF
                     RNLSSPTCNGG"
BASE COUNT          465 a          825 c          848 g          495 t
ORIGIN      
        1 cccacgatct gcttggaatg atcgacgata tcctcgacat ggcgaagatc gaagccgggc
       61 ggctcgtctt gacatctgcg ccgctggaat ttggcgaatg ggtgaaaagc gtggtggcga
      121 tctatgagcc ggcggcgcgc agcaaaggca tcgcgcttgt cgtgcgcgag cgtggtcgtc
      181 aggagcatga gcgcgtgtgg gtgatggccg acgggctgcg cctgaggcaa gtgctgggca
      241 acctgttgtc gaatgcgatc aagtttacgg atgcgggaca agtgacgctc gagtatgcga
      301 tcggggcggc gagaacgggc cacgcgcata gcccccttga tgccgatgcg cgcgtcgcgc
      361 atcgcgaact gttgctggca gtctcggaca ccggcatcgg tatcgcagcg gatcagcaag
      421 cgttgctgtt cgctccattc gcgcaggcgc gacaggagcg gcctggccga tttgggggca
      481 ccggtctcgg ccttaccatc tgccggcgct tgatgaccat gatgggcggc acgatccggt
      541 tgtccagcaa gcccgggcag ggaagccgct ttaccgcgcg ggtacgcttg cctgtagccc
      601 gcccgccgct ggaaacgctt gcgcccgcaa tcacgcccga gctcgatacg catgacgtga
      661 tcggtctgca tgtactcgtt gtcgacgatc atccggccaa tcgcatcctg ctggcgagcc
      721 agttgaatac gctcggctgc gtgattgaaa ccgccaacga cggcggggct gcttttgcgc
      781 gttgggagag gcagcggcaa gaaggcgcac cgttcgactt gatcctgacc gactgttcga
      841 tgcccacgat gagcggcgag gatcttgcgc gtgcaattcg tgcgcgcgaa cgggcgctga
      901 cgcgtgcgaa cgccgatcca aagctgacgc ccatcatagg cgtgaccgcg aacgcgcagc
      961 cggaggcgct gactcaagca ctcgacgcag gcatgacgtt gtgcctcgtc aagccgcttg
     1021 ggctcgacgc gctgcaccgc gcgctggtac ttgccatgca ggatgagcgg gggccgaagg
     1081 ccgccgcgct gagcgacgcc ttgcctattg ccactcttgc cactcttgcc actcgagccg
     1141 gacatccgag gccgccatcg gattccagat ccttcttcga tcgcgtattg ggtgctgccc
     1201 ccatgcatat gtcgaccgca tcgattggtt ctgcgagatc catcgcgcca gaccgtgcgc
     1261 atgcggatac ctatggcccc actcaaaact tcccggcgaa cagggccgcc ggcagggccg
     1321 tttcagctgc actcaatatg tccgtctccc atcccgggca actgaacggc gcgttcgacg
     1381 gcccctcgga tacagcgtcc gaaactgttc aagctgtcga tcacgtcgcg atggaaccag
     1441 gcacggtcac tcgcccatcc acggtcccgc gtttcaacgt ggaccaactc aacggcttcg
     1501 gtgatcaagc cgccgcgcta gtcgatgcct tgaagacggc gaaccggcag gatctcgatg
     1561 aggcgcgtcg ggcgtttgca tcggcggatt ttcatcgttt gctcgaactg acgcatcgga
     1621 tgaagggggc ggcgttcgtg atcggcgcca cgtctttctc cgatgcctgc ctgagcctgc
     1681 agcatgcatg cgcgctagag ccagggcaag gctacgacac cgtggcgatt cgcgcggcct
     1741 atttgcgttt ccacgacgaa gcaataacgc tcgatacggc gctcgagcag cattctgcct
     1801 aaacgcccca ggccgcttta cttgtcgatt gccgctgatc gagcgggtca ttccacggtc
     1861 gtgattaatg tccgattccg ttcctggaac gcgcatgtgt tttaattagc ccctcctctc
     1921 gctccgacac atggccgttg cgtttctggc gcggcccgat cgccgaatga atagaaggtt
     1981 tctttcgcat caccgttacc gccgtcatag tcgccggcgt gttgccaccg tgtggttcct
     2041 gcttgcgctt tcggccggcg gcgtgccggt tcacgcgcaa aaacccgagc tgctcgatcc
     2101 gcgcgtgacc cagtcgacca tcgtggacac gatctgccgc cccggttatg ccgacgatgt
     2161 cctgcctccc ttcgacacct tgcagcgcca gaaggaacaa ctgctgagtc aacgccacgt
     2221 ggacccgctg agcgctgcgg actacgcgct cgatcaccgc atgccgatcc tcctaggcgg
     2281 ctccccgacg gccgcggcga acctcgatat ccgccggtgg gacgggcgtg cagggcagcg
     2341 ccgcaaggaa cggctggcgg tgtttctgaa gcgctgcgtg tgtacggggg atatgccgct
     2401 ggcagcggca caagcggcca tgtcggggga ctggccgagc cgtttccgca atctgtcgag
     2461 tcctacttgc aacgggggat gaggcacgtg ctccgttgcg caaggtgaag gatggcgcgg
     2521 tggacgacca aagcgccgtg ctgatgcgca cgccggccga caaaactagc gactgggcga
     2581 acgcagcgaa tcggaggagc gggagcaagc ccggagggct gggcgtgcgg cca
//
LOCUS       DATGBK010000769         3487 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_287082, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000769 DATGBK010000000
VERSION     DATGBK010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287082"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..330)
                     /locus_tag="VKJ77_10825"
     CDS             complement(<1..330)
                     /locus_tag="VKJ77_10825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45806.1"
                     /translation="MDRFTQIEFFVLTAETGSLSKAAEKLNMSNAAASRTLNALEERL
                     GARLVERTTRRLWLTDAGRDYHRRCNAILAEMAEADSAAGDAALNPRGTLRVTSSVSF
                     AMMHIAPW"
     gene            463..1347
                     /locus_tag="VKJ77_10830"
     CDS             463..1347
                     /locus_tag="VKJ77_10830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006490560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intradiol ring-cleavage dioxygenase"
                     /protein_id="HMC45807.1"
                     /translation="MRNIDEDTITQAVLASMDGCGNPRLHTVMTSLVQHLHAFAREVK
                     LTEDEWFTAIKFLTDVGNITDDKRQEFVLLSDTLGLSMLVTTQNNRKPAACTEATVLG
                     PFFVDGAPEYQNGDDVSNGALGAPCFVQGQIRGVNGEPVADASIDVWQSDEDGFYDVQ
                     KTTDDVGNMVHSARGKLHAQADGRFHFRSILAEAYPIPHDGPVGRMLDALGRHPWRPA
                     HLHFWIKAPGYDTLITHVFRDGDQYLDSDAVFGVRSNLVVEWVKHEPGIAPDGTVMGT
                     PFYTLDYDFVLNRKGVAA"
     gene            1344..1697
                     /locus_tag="VKJ77_10835"
     CDS             1344..1697
                     /locus_tag="VKJ77_10835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011351651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dabb family protein"
                     /protein_id="HMC45808.1"
                     /translation="MIRHIVMWRVSGETPEENLASRQLVKHSFEGLRGRIPGMIHLEV
                     GLDSSAADYACDVVLVTDFESQHALEAYASHPEHLRVRQQLGDIRTARFQVDYPVEPL
                     TPASLSTVETANAGI"
     gene            1684..2754
                     /locus_tag="VKJ77_10840"
     CDS             1684..2754
                     /locus_tag="VKJ77_10840"
                     /EC_number="1.3.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018506 - maleylacetate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetate reductase"
                     /protein_id="HMC45809.1"
                     /translation="MQAFDFVYSARAARVVFGAGSLQHLEREVLNLNAERALILCTPQ
                     QRDVAEALAVRLGTRAAGIFDRAVMHVPVELAAEARQLAKRLNADCAIALGGGSTIGL
                     GKAIALESDLPILAIPTTYAGSEMTPIFGLTEAGLKRTGTDLRVLPKTVIYDPELTLT
                     LPAQLSLTSGINAIAHAAEGLYSRDANPIISLMAEEGIASLARALPVIVAQPEDSYAR
                     SQALYGAWLCGTVLGSVGMALHHKLCHTLGGSFNLPHAETHTIILPHALSYNASAAPD
                     AMKRIARALGHNNAAMGVYELAKANGAAVALKDIGMSAAQLDRAAEIASANPYWNPRA
                     VEYNAIRSLLQDAFDGAPPREH"
     gene            complement(2921..>3487)
                     /locus_tag="VKJ77_10845"
     CDS             complement(2921..>3487)
                     /locus_tag="VKJ77_10845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45810.1"
                     /translation="VNFMNLLNLFFLANWLPTIAADAGYSVSRASLVGTTLQVGGVIG
                     TIAMGPLIDRWGFFRILSPGYLIAALAIAGIGQTSHLSFALMMAFVAVSGFGIVGAQP
                     ANNTLAATIYPTALRATGVGWSLGVGRAGSIVGPIVAGNLMELHWSSRYLFVAAAIPA
                     VLSCVMIAALSRDKLFASSSAATEPELV"
BASE COUNT          728 a         1024 c         1041 g          694 t
ORIGIN      
        1 ccacggcgca atatgcatca ttgcgaacga gacggaactc gtgacacgca acgtgccgcg
       61 cgggttcagc gcggcgtcgc ccgcagcaga atcggcctcg gccatctcgg ccagaatggc
      121 gttgcagcgc cggtgataat cgcgcccggc gtcagtcagc cagagccggc gcgtggttcg
      181 ctcaaccagc cttgcgccca gccgctcttc cagcgcattc aacgttcggc tggccgcggc
      241 gttcgacatg ttcagcttct ccgccgcttt ggaaaggctg ccggtctccg ccgtcaggac
      301 aaaaaattcg atctgggtga agcggtccat aagggatttt tccgcctggt ggaaatatca
      361 tttcactata gctcgtttta ttccagcgaa ccaagggcta atatcgacgc tatcagactc
      421 gctgatcatc accggcagcg gccataaaag gagacaccct caatgcgcaa tatcgacgaa
      481 gacaccatca cgcaggctgt ccttgcgtca atggatggat gtggcaaccc acgccttcat
      541 accgtcatga cgagcctcgt gcagcatctg cacgcgttcg cccgtgaagt gaagctcacc
      601 gaggacgagt ggttcacggc catcaagttc ctgaccgacg taggcaatat cacagacgac
      661 aaacgccagg agttcgtcct gctctctgac acgctgggac tctccatgct ggtcaccacg
      721 cagaacaaca ggaagcctgc agcgtgcacc gaggcgaccg tattgggtcc cttcttcgta
      781 gacggcgcac cggagtatca gaacggcgac gatgtatcga atggtgcgtt gggcgcgccg
      841 tgttttgtgc agggtcagat tcgcggcgtg aacggcgagc cagttgccga tgcgtcaatc
      901 gatgtatggc agtcggatga agacggtttt tacgacgtgc agaaaaccac tgatgacgta
      961 ggcaacatgg tgcatagcgc acgcggcaag ttgcacgcgc aagccgacgg ccgctttcat
     1021 ttccggtcaa ttctcgcgga ggcttatccg atccctcacg atggcccggt tggaagaatg
     1081 ctcgatgcac tcgggcgaca tccgtggcgg cccgcccatc tgcatttctg gatcaaggcg
     1141 cccggttatg acacgctgat cacccacgtg tttcgcgacg gcgatcagta tctggactcg
     1201 gatgcggtgt ttggcgtgcg gtcgaacctg gtcgtggaat gggtaaagca cgaacctggc
     1261 atagcgcccg acggcaccgt catgggcacg ccgttttata cgctcgacta tgactttgtc
     1321 ctgaaccgca aaggggtcgc ggcatgattc ggcatatcgt catgtggcgt gtgagcggag
     1381 aaacgccgga ggaaaactta gcgtcgcggc agctcgtcaa gcacagcttt gaagggctgc
     1441 ggggtcgtat ccccggtatg atccatctgg aagtcggttt ggattccagt gccgcggatt
     1501 atgcctgcga cgttgtcctg gttaccgatt tcgaatcgca gcacgcgctt gaggcctatg
     1561 ccagtcaccc tgagcatctg cgtgtgaggc agcaactggg cgatatccgg accgcccggt
     1621 ttcaagttga ctacccggtc gaacctttga cgccggcttc actgtcgacc gtggagacgg
     1681 ccaatgcagg catttgactt cgtctattcg gcgcgggcgg cgcgagtggt gttcggcgca
     1741 ggcagcctgc agcatcttga acgcgaagtg ctgaacctga atgccgagcg agcgctgatc
     1801 ctgtgtaccc ctcaacaacg cgacgttgcc gaagcactgg ccgtccgcct gggaacgcgt
     1861 gcggcgggta tcttcgatcg cgcggtcatg cacgtgccgg tggagctcgc ggccgaagcc
     1921 cggcaattgg ctaaaagatt gaatgcggat tgcgcaatcg cgctgggcgg tggctcgacc
     1981 attggacttg gcaaggcaat cgcactcgaa tcagacttgc cgatactcgc tattccgacg
     2041 acctacgccg gcagcgaaat gacacccatt ttcggtttga cggaagcggg cctgaagcga
     2101 accggaaccg acttgcgggt gcttcccaag acggtaatct acgatcccga attgacgctg
     2161 acgctcccgg cgcaactgtc gctgacaagt ggtatcaatg ccattgcgca cgctgctgaa
     2221 ggactctatt cgcgcgatgc caatccgatt atcagcttga tggcggagga gggtattgcg
     2281 tcactggcac gtgcattgcc ggtgattgtc gcgcaacctg aggatagtta cgcgagatcg
     2341 caggcgctgt acggcgcgtg gttgtgcggc acggtgctgg gaagtgttgg catggccttg
     2401 catcacaagc tctgtcatac gcttggcggc agtttcaatc tgccgcatgc ggagacccac
     2461 acgatcatcc tgccgcacgc actgtcctac aacgcgagcg ccgcgcctga tgcaatgaag
     2521 cggatagcac gcgccctcgg gcacaacaac gcggcgatgg gtgtgtatga actcgcgaag
     2581 gcgaatggcg ctgcggtcgc gcttaaagac atcgggatga gcgcggcaca gcttgatcga
     2641 gcggcggaga ttgccagcgc caatccgtac tggaatccgc gggctgttga atacaacgcg
     2701 attcgctcgc tgctgcagga tgccttcgat ggcgcaccac cgcgcgaaca ttaatgcggt
     2761 tttgttgagg tgccgcttta tataggccat gcacctctct ttcgcgaaag tagaagacgc
     2821 cgcttacgag cggcgttttt tactttcagg gttgtcgttt tcgcttgttt caccgcgtcg
     2881 atcagcacct ttcacgacgg gatgcgcgcc tcgtttcctc tcacacaagt tccggctcgg
     2941 ttgcagcaga cgatgaagca aacagcttgt cacgcgagag cgccgcaatc atcacgcagg
     3001 acaacaccgc aggtatcgca gctgccacaa agaggtaacg cgacgaccag tgcagttcca
     3061 ttagattgcc tgcaacaata gggccgacaa tcgatccggc gcgaccgaca cccaggctcc
     3121 agccgactcc cgtcgcgcgc aacgctgtgg ggtagatcgt tgccgcaagc gtattgttcg
     3181 ccggttgcgc gccaacaatg ccgaagccac tgactgcaac aaaggccatc atcagcgcga
     3241 aggaaaggtg cgacgtctgg ccgatccccg cgattgccag cgccgcgatc aggtagcccg
     3301 gcgagaggat acggaagaat ccccagcgat cgataagcgg ccccatcgca atcgttccta
     3361 tcaccccgcc tacttgcagc gtggtgccga caagcgacgc gcgagacacg ctgtatccgg
     3421 catcggccgc aatagtcggc aaccagttcg ccaggaagaa caggttcagc aagttcatga
     3481 agttcac
//
LOCUS       DATGBK010000770         1887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147871, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000770 DATGBK010000000
VERSION     DATGBK010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147871"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..526
                     /locus_tag="VKJ77_10850"
     CDS             <1..526
                     /locus_tag="VKJ77_10850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006414572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HMC45811.1"
                     /translation="DTLTPTKELVASPPLIQIGAGGNQLVRLVRTSPAPTGTEQSYRI
                     VIDELPSPGTHSANGVNIRLRYSVPVFVEPAGKVAAPVLSWHLGRDIKGWVLRVDNAG
                     TRRAQIASVQVVDSAGKIHEISKGLLGYALAGRARQWQVSLPADAILRGEVKVRAAVN
                     AMPLEAMATVAPPG"
     gene            617..>1887
                     /locus_tag="VKJ77_10855"
     CDS             617..>1887
                     /locus_tag="VKJ77_10855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009892471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015473 - fimbrial usher porin activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
                     /protein_id="HMC45812.1"
                     /translation="MKIRRRLRRHSRSLQIALAATELVATLECTRAFAQAQQDGLPLS
                     RLGAQRPDATANPSHDLYLEVSLNGERSILIAQFRESGGRLSAAGKDLGNIGIAIDRL
                     GIAETAEVPLDSIRGLHYTYDAARQRVTLQVPDDIRKPYTFDTRALSGPPPATSSRGF
                     LINYDAYAQSDTQAQLAIWSEERYFDPAGVFSNTGVAYLYRSDHRYTRFDTSWSTSDP
                     VSLDTKQMGDTISSSLAWSRSVRMGGFQWRSNFALRPDLVTFPVQAFGGSAVVPSSVD
                     LYVNSVRQFSGNVPSGPFIVSNVPGITGGGQATVITRDALGRTVETLVPLYVDTRLLA
                     TGLTSYSFEAGFLRRAYGLDSFRYDPNPAVSASARHGVNDYLTLEAHAEATRDVYNAG
                     AGALVRLGMAGVVNGSLAASTGRLAGTQASLG"
BASE COUNT          321 a          619 c          603 g          344 t
ORIGIN      
        1 cgacacactg acgcccacga aggaactcgt cgccagcccg ccgctgatac agatcggcgc
       61 agggggaaac cagctcgtgc ggctcgtgcg aacttcgccc gcgcccacag gcacggagca
      121 aagttatcgc atcgtcatcg acgagttgcc gtcgcccggg acccactccg ccaacggcgt
      181 gaacatccgg ctgcgctatt cggtgccggt gtttgtcgag ccagcgggca aggtggccgc
      241 gccggtgctg tcatggcatc tcggtcgtga catcaagggc tgggtgctgc gggtggacaa
      301 cgcgggcacg aggcgcgcgc agatcgcgtc ggtgcaagtg gtggacagcg ccggcaagat
      361 ccacgagatc agcaagggtc tgcttggcta tgcattagcc ggccgcgccc gccagtggca
      421 agtgtcactg ccggccgacg ccattctgcg cggcgaggtg aaggtccgcg ccgcggtcaa
      481 tgcaatgcca ctggaggcca tggcgacggt cgcgccgcct ggttgaacgg cggcgcggag
      541 cgattgtttc ctcgtttcct cgttgcctcg ttgcctcgtt gccgagcgct gccatgatgc
      601 atcccaattt gaatcgatga aaatccgacg acgcctcaga cgtcattccc gaagccttca
      661 gatcgcgctc gccgcaacgg aactggtcgc tactctggag tgcacgcgcg ctttcgcaca
      721 agcgcagcag gacggcctgc ctctcagccg gcttggtgcg cagcggcctg acgccactgc
      781 aaacccgtcg catgacctgt atctcgaagt gtcgctcaat ggcgagcgtt ccattttgat
      841 cgcgcaattt cgcgagtcgg gcggccgtct gtccgcagcc ggtaaagacc tcggcaacat
      901 cggcatcgcg atcgaccggc tcggcattgc ggaaaccgcg gaggtgccgc tggattccat
      961 tcgtggtctt cactacacct acgacgcagc gcgtcaacgc gtcacgctgc aggtgcccga
     1021 cgacatccgc aaaccctata ccttcgatac ccgcgcgctt tcaggcccgc cacccgccac
     1081 gtcgtcgcgc gggttcctga tcaactacga cgcctacgcg caatccgata cccaagcaca
     1141 gctcgcgatc tggagcgagg aacgttactt cgatcccgca ggcgtattca gcaacacggg
     1201 ggtcgcgtac ctgtaccgca gcgatcatcg ctatacgcgg ttcgatacat cgtggagcac
     1261 gtctgatccc gtctcgctcg atacgaaaca gatgggcgac accatctcgt cgtcgctcgc
     1321 ctggtcgcgt tcggtgcgca tgggcggctt ccagtggcgc agcaacttcg cgttgcgccc
     1381 cgatctcgtg acgtttcctg tgcaggcttt cggcggctcg gcggtcgtgc cgtcgtcggt
     1441 ggatctctat gtgaacagcg tgcgccagtt cagcggcaat gtgccaagcg gtccgttcat
     1501 cgtgagcaat gtgccgggca tcaccggcgg cggccaggcg accgtgatca cgcgcgacgc
     1561 gctgggacgc acggtcgaga cattggtgcc gctctatgtg gatacgcggc tgcttgccac
     1621 gggcctgacg agttattcgt tcgaagccgg gttcctgcgc cgcgcctacg gactggattc
     1681 gttccggtac gatccgaatc ccgcggtgag cgcatcggca cgccatggcg tcaacgacta
     1741 cctgacgctc gaagcgcatg cggaggccac ccgtgacgtg tataacgccg gtgccggagc
     1801 gctcgtgcgg cttggcatgg cgggcgtggt caacggctcg ctcgcggcaa gcacggggcg
     1861 cctcgccggc acgcaggcaa gcctggg
//
LOCUS       DATGBK010000771         1775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_78662, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000771 DATGBK010000000
VERSION     DATGBK010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78662"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1303
                     /locus_tag="VKJ77_10860"
     CDS             <1..1303
                     /locus_tag="VKJ77_10860"
                     /inference="COORDINATES: protein motif:HMM:NF013173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HMC45813.1"
                     /translation="EALGSGALALLDLPAAHYGGYYEGFANSALWPALHSRADLIRAS
                     HEDYRSYREVNAFVARSLMRFCKTDTTFWIQDYHFLALGADLRERGVQQPIGFFLHTP
                     WPARTVIDGVPHHRDLIEAMLAYDLIGFQTDDDRDNFIEYLKIELGLVVTDGEVTSRY
                     GKSRLATFPIGIDVDRFSVQAAKAASHPDVSRLRRSLNGEKLAIGVDRLDYSKGLINR
                     INAFDRMLTSHPALSRTVSLLQIATPSRGMIEAYGNLQADVAKLVSDVNGRHGEVDWT
                     PIRYLNKGFSQTVLAGFYRTAQVGVVTPLQDGMNLVAKEYVAAQNPSDPGVLVLSKFA
                     GAADELDTALQVNPNDIDGMARAIATALSMPLIERRMRWEAMMKKLRAATITNWFSSF
                     VEALDEAHASREGRGSTGLVPDPSPVWPVQVTAAANSARYH"
     gene            complement(1342..>1775)
                     /locus_tag="VKJ77_10865"
     CDS             complement(1342..>1775)
                     /locus_tag="VKJ77_10865"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF001938.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HMC45814.1"
                     /translation="LIGRRFRDDGPEIVLPGLEWQTPQGGIDPEENPRDAVMRELWEE
                     TGVTRADYLGETDWMTYEFPPYDGPQSHRLAKFRGQRQKWFALRFTGSDDEIDPLAVR
                     NGQPAEFDQWRWERLDRVADLVVPFRREVYLHVAERFGDFV"
BASE COUNT          337 a          520 c          556 g          362 t
ORIGIN      
        1 tgaagcgctc ggaagtggcg ctctcgcctt gctggatttg ccggcagctc actacggcgg
       61 ctactacgaa ggcttcgcca attcggcgct gtggccggcg ctgcattcgc gcgcggattt
      121 gattcgcgcg tcccatgaag attatcggtc ctatcgtgaa gtgaatgcat tcgtcgcgcg
      181 ttcgctgatg cgattctgca agacggatac gacgttctgg atccaggact atcattttct
      241 cgcgcttggt gcggatttgc gtgagcgtgg cgttcaacag ccgatcggat ttttcctgca
      301 tacgccgtgg cctgcacgca ccgtcatcga tggcgtgccg catcatcgcg atctgatcga
      361 ggcgatgctg gcctatgacc tgatcggctt ccagaccgat gacgatcggg acaacttcat
      421 cgaatatctt aaaatcgaac tcggcctggt cgtcactgac ggcgaggtga catcgcgtta
      481 tggcaagtcg cggctggcaa cattcccgat cggcatcgat gtcgatcgct tcagcgtaca
      541 ggccgcgaaa gccgcgtcgc atccggatgt ctcgcggctg cggcgaagcc tgaatggtga
      601 aaagctggcg atcggcgtcg atcggctgga ttattccaag gggctgatca atcgcatcaa
      661 tgctttcgat cgcatgctga cgtcgcatcc ggcgttgagc cgcaccgtct cgttgctgca
      721 gatcgcgacc ccgtcgcgtg gcatgatcga ggcctacgga aacttgcagg ccgatgtcgc
      781 caagctcgtg agcgacgtca acggccgtca cggcgaagtc gactggacgc ctatccgtta
      841 tctcaacaag ggtttcagcc agactgtgct ggccgggttc tatcgcacgg cgcaggtggg
      901 cgtggtgacg ccgctgcagg acggcatgaa tctggtcgcc aaggaatatg tcgcggcgca
      961 aaatccttcc gatcccggtg tgctggttct gtcgaaattc gccggtgctg cggatgagct
     1021 cgatactgcg ttgcaggtca atcccaacga catcgatgga atggcccggg cgatcgcaac
     1081 ggcgttgtcg atgccgttga tcgagcggcg gatgcggtgg gaagcgatga tgaagaagtt
     1141 gcgagccgca acgatcacca actggttctc aagcttcgtc gaagcgctcg acgaggcgca
     1201 tgcgtcgcgc gagggtcggg gatccaccgg cctggtcccc gatccgtctc cggtatggcc
     1261 ggtgcaggtg acggcggcgg cgaacagcgc gcggtaccac tgatcacagc ggcgagccgc
     1321 gaaatagttt ggagcgacag ctcagacgaa atctccaaat ctctcggcga cgtggaggta
     1381 gacctcccgc cggaacggca ccaccagatc ggcaacgcga tcaagccgct cccatcgcca
     1441 ttgatcgaat tctgcaggct ggccgttgcg aacggcgagc ggatcgattt cgtcgtcact
     1501 gccggtgaaa cgcagcgcga accatttctg ccgctgaccg cgaaatttgg cgaggcgatg
     1561 ggactgcggt ccgtcataag gcggaaactc gtaagtcatc caatcggtct cgccgagata
     1621 gtcagcacgc gtgacgccgg tctcctccca gagttcacgc atcaccgcgt cgcgtggatt
     1681 ttcctcgggg tcgatgccgc cttgcggcgt ctgccattca agaccgggga gaacgatttc
     1741 cgggccatcg tccctgaagc gccgcccgat cagga
//
LOCUS       DATGBK010000772         1596 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_9052, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000772 DATGBK010000000
VERSION     DATGBK010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9052"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..985)
                     /gene="nadA"
                     /locus_tag="VKJ77_10870"
     CDS             complement(<1..985)
                     /gene="nadA"
                     /locus_tag="VKJ77_10870"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012329066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HMC45815.1"
                     /translation="MDQAIKSVEYDRPQGLTCGIGQAWAKVPDAPSREEKRELKERIR
                     ALLVREKAVLVAHYYVDAELQELADETGGCVADSLEMARFGRDHAAQTLIVAGVRFMG
                     ETAKILSPEKRVLMPDLDATCSLDLGCPADEFSAFCDAHPDRTVVVYANTSAAVKARA
                     DWMVTSSIGLEIVADLHARGEKILWAPDRHLGGYIQKKTGADMLSWQGSCLVHDEFKG
                     VELDLLRAEYPDAKILVHPESPEAVVALADVVGSTTQLIDAAVRLDAKRFIVATDLGI
                     LHKMRLAAPGKEFIEAPTAGNSATCKSCAHCPWMAMNGLSNLAVVLERGHNE"
     gene            complement(1136..>1596)
                     /locus_tag="VKJ77_10875"
     CDS             complement(1136..>1596)
                     /locus_tag="VKJ77_10875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HMC45816.1"
                     /translation="LAKVKKIAPTPRLSASKPVLDHDTLQAVLSNRYEVMARYGKTLK
                     RAYRQELSKLKEGGSADKYQLMRGARKWAHKEEAGLDEPQRQQLPALFSDNHKLRTFI
                     ELREDLSAMWDRSNASREQLLAQLQDWCHRAEQSGIKALQDFASRLRRYA"
BASE COUNT          309 a          522 c          441 g          324 t
ORIGIN      
        1 tctcgttgtg gccacgttcg agcacgaccg ccagattgga cagcccgttc atcgccatcc
       61 acgggcaatg tgcgcaactt ttgcaggtag cgctgttccc ggccgtcggt gcctcgatga
      121 attccttgcc gggcgcagca agccgcatct tgtgcagaat cccgagatcc gtcgcgacga
      181 taaaccgctt cgcatcaagc cgcaccgccg cgtcgatcaa ctgcgtggtg gaacccacca
      241 catcagccaa cgcgaccacc gcttccggtg attccggatg aacaaggatt tttgcgtcgg
      301 gatattcggc acgcaacaga tcgagctcaa cgcctttgaa ctcatcgtgg acaagacacg
      361 aaccctgcca cgacagcatg tcggcgccag ttttcttctg gatataaccg cccagatgcc
      421 ggtcaggcgc ccagaggatc ttttcaccgc gcgcatgcag atccgcaacg atctccagcc
      481 cgatcgacga tgtcaccatc cagtccgccc gcgctttcac agcggcgctg gtgtttgcgt
      541 acaccacgac cgtacggtcg ggatgggcat cgcaaaaagc ggaaaactcg tcggcaggac
      601 aacccaagtc gagggaacac gtggcgtcga gatcgggcat cagcacgcgt ttttcggggc
      661 tgaggatctt cgcggtctcg cccatgaaac gaacgccagc cacgatcagc gtctgtgccg
      721 cgtgatcgcg cccgaaacgc gccatttcta gcgaatccgc cacgcaaccg ccggtttcgt
      781 cggcgagttc ctgcaactcg gcatcgacat aataatgtgc gaccaacacc gctttctcac
      841 gcacgagcaa cgctcggatg cgctccttca actcgcgctt ttcctcgcgc gacggggcgt
      901 ccggcacttt cgcccacgcc tggccaatgc cgcatgtcag tccctgcgga cggtcgtact
      961 cgacgctttt aatcgcttgg tccatcgctt cctcgtctcc tgtctcacac aatgcgtcgt
     1021 gcaacgcctc gtgaatactg cgccccaaaa tgcaaaaacc ccgccagagc ggggtcttgt
     1081 gacgtcatga aattttaacg gatatcgatg acgaaggtcg gcagggttgc tgccgtcagg
     1141 cgtagcgtcg cagccgtgac gcgaaatcct gcagcgcctt gatcccgctt tgctccgccc
     1201 ggtgacacca gtcctgcagt tgcgcgagca gttgttcacg cgacgcgttg gaacggtccc
     1261 acatggccga caagtcctcg cgcaattcaa taaacgtgcg cagcttgtgg ttgtcggaga
     1321 aaagcgccgg caactgctgg cgttgcggct cgtccagacc cgcctcttcc ttgtgagccc
     1381 acttgcgggc gccgcgcatc agttggtact tgtcggcgga accgccttct ttcagcttcg
     1441 acaattcctg ccgatacgca cgcttgagcg tcttgccgta acgcgccatg acttcatagc
     1501 ggttcgacag cacggcttgc aacgtgtcgt gatcgagcac cggcttggac gccgagagcc
     1561 gcggcgtggg ggcaatcttc ttgaccttgg ccagct
//
LOCUS       DATGBK010000773         1506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_125013, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000773 DATGBK010000000
VERSION     DATGBK010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125013"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            328..1074
                     /gene="rph"
                     /locus_tag="VKJ77_10880"
     CDS             328..1074
                     /gene="rph"
                     /locus_tag="VKJ77_10880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HMC45817.1"
                     /translation="MNPSAPFNRPSGRRADQLRDVRITRHYTKHAEGSVLVEFGDTKV
                     ICTASISERVPEFLRGRDQGWLTAEYGMLPRATNTRNDREAARGKQTGRTQEIQRLIG
                     RALRSVFDLNKLGARTLHIDCDVIQADGGTRTASITGAFVAAHDAVTKLLAAGKIAES
                     PINQFVAAISVGVYNGQPVLDLDYDEDSQCDTDMNVVMTGAGGFVEVQGTAEGVPFTR
                     AEMNALMDLAQSGIETLIAKQKVALELLSV"
     gene            1067..>1506
                     /locus_tag="VKJ77_10885"
     CDS             1067..>1506
                     /locus_tag="VKJ77_10885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009143 - nucleoside triphosphate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HMC45818.1"
                     /translation="MSDSASAHALKRVVLASNNPGKLREFAALLSTAGIDLVTQGELG
                     VSEAEEPHVTFVENALAKARHASAATGLPALADDSGLCVHALRGAPGVYSARYAQLLN
                     GGEKSDAANNARLVKDLASESDRRAYFFSVLVLVRHATDPEPLIA"
BASE COUNT          287 a          480 c          462 g          277 t
ORIGIN      
        1 tttgttgctt atcgcttgct gctcgcccgg cacggccagt tcgcttcgaa acgcccggcg
       61 tgaagctgcg cgaaatggca ggcaatgttg gccgggcgag gaagctggca ttatcccatt
      121 tttgccgatc ccgcccgtgg aaacgcaatg ccgccatgcg gcgcgcacgg atgaacacgg
      181 ggtgaacctg gaaagccgcg ccggacgctc actccgattg cggataaaat tcgtaccttg
      241 gcgcgatttt tacgcttttt ttaccgtgcg cccaagctcc tttcaccgcg tttctttcac
      301 ttttccgcct ccatgaccga ctccacgctg aacccgtccg ccccgttcaa ccgcccgagc
      361 ggccgtcgcg cggaccaatt gcgcgacgtg cgcatcacgc ggcactacac gaagcatgcg
      421 gaagggtcag ttctcgtaga attcggcgat accaaggtga tctgtaccgc gagcatttcc
      481 gagcgcgtgc ccgaattcct gcgcggacgt gaccaaggct ggctcacggc cgaatacggc
      541 atgctgccgc gtgccaccaa cacccgtaac gaccgtgaag ccgcgcgcgg caagcaaacc
      601 ggccgcacgc aggagatcca gcgcctgatc gggcgcgcgc tgcgttccgt gttcgatctg
      661 aacaagctgg gcgcgcgcac gctgcatatc gactgcgacg tgatccaagc cgacggcggc
      721 acgcgcacgg caagcatcac gggcgcgttt gtcgcggccc acgatgcggt aaccaagctg
      781 ctggccgccg gcaaaatcgc ggaatcgccg atcaatcagt ttgtcgcggc gatctcggtc
      841 ggcgtgtaca acggccagcc ggtgctcgat ctcgactacg acgaagactc gcagtgcgac
      901 accgacatga acgtcgtgat gaccggcgca ggcggtttcg tagaagtaca gggaacggcc
      961 gaaggcgtgc cgttcacgcg cgccgaaatg aacgcgctga tggatctggc gcaaagcggt
     1021 atcgaaacat tgatcgcgaa gcagaaggtc gcgctggagc tgctcagtgt ctgattctgc
     1081 ttccgctcac gccttgaaac gcgtcgtact cgcgtccaat aaccccggca aattgcgcga
     1141 gttcgcagca ctgttgagca ccgccggcat cgatcttgtg acgcaaggcg aactcggcgt
     1201 gtccgaggcc gaggaaccgc atgtgacgtt cgtcgagaac gcgctggcga aggcgcggca
     1261 tgcatcggcg gcgaccggac tgcctgctct tgccgacgac tccggcctct gcgtgcatgc
     1321 gttacgcggt gcgccgggcg tgtattcggc ccgctatgcg caattgctca acggcggcga
     1381 gaaaagcgac gccgcgaaca acgcgcggct cgtgaaggat ctggctagtg aatcagatcg
     1441 acgcgcgtat ttcttctccg tcctcgtgct ggtgcgtcat gccaccgatc ccgaaccgct
     1501 gattgc
//
LOCUS       DATGBK010000774         1521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_287111, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000774 DATGBK010000000
VERSION     DATGBK010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287111"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..645)
                     /locus_tag="VKJ77_10890"
     CDS             complement(<1..645)
                     /locus_tag="VKJ77_10890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HMC45819.1"
                     /translation="MSPTPANAGRPAYDSRRLQRIFDRRASTFDDVAFLPREIAQRMR
                     ERLDYIKVTPVRVLDAGCGMGADLPGLRERFADASVLGMDLSAAMLARANQAETAESE
                     ANAGWRRFLPATLGKAFGARGPQLAQGDFAHLPFVASAFEMLWSNLALHWHARPDLVF
                     PEWARVLKVNGLLMFSTLGPDTLKELSGAYAQAEKSLGLAPQRHTIEFVDMHDLG"
     gene            897..>1521
                     /locus_tag="VKJ77_10895"
     CDS             897..>1521
                     /locus_tag="VKJ77_10895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="double zinc ribbon domain-containing protein"
                     /protein_id="HMC45820.1"
                     /translation="MRDIALPSQCALCGNLSQKVLCAGCDEQYWNQTRTRCPVCALPV
                     PVLAAASAASAGVKNGAHLPCRRCIAEPPHFDATIALADYHAPLDTLALDLKFHARLA
                     TADEFARQLQAAFESTDAAPPDVVAPVPLSPRRLRTRGYNQAWSIGKPLARRLRSLAD
                     ATLIERTRDTAPQAKLDLDTRRTNVGNAFTVLRDIRGQHVAIVDDVMT"
BASE COUNT          272 a          484 c          482 g          283 t
ORIGIN      
        1 accgagatcg tgcatatcga cgaattcgat agtgtggcgc tgtggcgcca ggcccagtga
       61 tttttccgcc tgtgcgtacg cgccactgag ctctttcagt gtgtcgggac cgagcgtgct
      121 gaacatgagc aggccgttca ccttgagaac acgtgcccac tcaggaaata cgaggtctgg
      181 ccgcgcatgc cagtgcagcg cgagattcga ccagagcatc tcgaacgcgc ttgcaacaaa
      241 cggcaggtga gcgaagtcgc cctgcgccag ttgcgggccg cgcgccccga atgccttgcc
      301 cagcgtggcg ggaagaaacc gccgccagcc ggcgttggct tcggattcgg ccgtctcggc
      361 ctgattcgcc cgggccagca tggccgccga caaatccatg ccgagcaccg acgcatcggc
      421 gaaacgctcg cgcaggcccg gcaggtcggc gcccatgccg cagcccgcgt cgagcacgcg
      481 cacgggcgtt accttgatgt agtcgagccg ctcgcgcatg cgctgcgcga tctcgcgcgg
      541 caggaacgcc acgtcatcga acgtcgaggc gcgacggtcg aaaattcgct gcaaacggcg
      601 cgaatcgtag gctggacggc cagcgttggc gggagttggg gacatgacaa cctactttct
      661 aagagtgcga agtatactcg gtcgattcct gaaacgttca gccaaaccag acagtgcaac
      721 ggttcccgcc gattctcgcc gcttctcctg cgcggtcgcc cgctcactca gtgcggattt
      781 ttgcgctgcc acgcattctt tggatcgaac gtatgaagct acggtttaat gtcgtatcgc
      841 gcggtccagg ctcgctacgc acggtttctg ccacggcgct gcggcggctc ggccagatgc
      901 gcgacatcgc gttgcccagt cagtgcgcat tgtgtggcaa tttgtcgcag aaggtgttgt
      961 gtgctggctg cgatgaacag tattggaacc agacacgcac acggtgcccg gtttgtgcat
     1021 tgcccgtgcc ggtgcttgcc gcggcctcgg ccgcatccgc tggcgttaaa aacggtgcgc
     1081 atttgccttg caggcggtgt attgcggagc ctccgcattt cgacgcaacc atcgcgctgg
     1141 ccgattatca cgcgccactc gatacactcg cgctcgacct caagttccac gcgcggctgg
     1201 caacggccga cgagtttgcg cgtcagttgc aggccgcgtt cgagagcacc gacgcggcgc
     1261 cgccggatgt cgtcgcacct gtgccgctgt cgccacggcg cctgaggacg cgtggctaca
     1321 accaggcgtg gtcgatcggg aaaccgcttg cgcgccggct tcgctcgttg gctgacgcaa
     1381 cgctgatcga gcgcaccagg gatacggcgc cgcaagcaaa gctcgatctc gatacgcggc
     1441 gcacaaacgt cggcaatgcg ttcacggtgc tgcgtgatat acgcggccag catgtggcaa
     1501 tcgtcgacga cgtcatgacc t
//
LOCUS       DATGBK010000775         2982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_217776, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000775 DATGBK010000000
VERSION     DATGBK010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2982
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217776"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..774)
                     /locus_tag="VKJ77_10900"
     CDS             complement(<1..774)
                     /locus_tag="VKJ77_10900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010810265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HMC45821.1"
                     /translation="MKTIGIIVYPDFQVLGLAVSTVFEFANATVGQTAYEVQLLSEHG
                     GSVRSSLGFGIETASFKDSAFHTLIVSGDNTGTPQSAGVAAFLRDALKTSQRIAATCT
                     GAFVLAEAGLLDGRRATTHWYFARALQRAFPQVKMEEDRIFVADGPIWTSAGASAGID
                     LALALVEKDLGTQTARLVAKKMVVYHRRAGGQSQYSALLELDAKSDRVQTALTYAKSN
                     LTAKLSIEELAEVAHLSPRQFSRVFTDETGQSPARAIENL"
     gene            921..1736
                     /locus_tag="VKJ77_10905"
     CDS             921..1736
                     /locus_tag="VKJ77_10905"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45822.1"
                     /translation="MSNVANKGTALVTGASTGIGAIYAKRLAERGYDVILVARNRDRL
                     NALATTLTTSTGRNFEVVVADLGTPEGVRKVEDILRNDSSITMLVNNAGVGATASLVD
                     SDIDKMDAMITLNVVALTHLTKAVVPGFVARGGGTIVNISSIVAVSPETLNGVYGGSK
                     AYVLALTQSLHHELGAKGVRVQAVLPGATSTEFWDIAGTPVSYLPESIVMTSEDMVDA
                     ALAGLDQGELVTIPSLPEAADWNVFEAARQTLAPNLSHRLPAARYGVTSGTQH"
     gene            2175..>2982
                     /locus_tag="VKJ77_10910"
     CDS             2175..>2982
                     /locus_tag="VKJ77_10910"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC45823.1"
                     /translation="MTSVPTSAPPIADWHQSAASLCLAGHYAQALSMVKPMLEPHPAL
                     TGSALAEALNIAAVCSLALSQLADAQAYWRHAIEAKPDFVDAYNNLGMLLKGLGSLAE
                     AEVIYRQLLGIRPDLAEASNNLGAVLYDLGRLHDAEAAYRHALAIRADYAQAHYNLGI
                     VLYDLRRWHEAESAYRQALVLSPDAGAYNNLGNVLKELARLPEAEAAYRQALILQPQY
                     AEALNNLANVLKELGRVPEAELACRMALTIRPDCAEAHLNLGAVLYDLGRL"
BASE COUNT          579 a          905 c          907 g          591 t
ORIGIN      
        1 cagattttct atggcacggg cgggcgactg tccggtttcg tcggtgaaga cccggctgaa
       61 ctggcgcggg ctgaggtggg caacttctgc cagctcttca atcgacagct tcgccgtcag
      121 gttggacttt gcataggtca gtgcggtctg cacccgatcc gatttcgcgt cgagttcgag
      181 cagcgcggag tactgcgact ggccaccggc gcgacggtga taaaccacca tttttttcgc
      241 cacgagccgc gctgtttgcg tacccaggtc tttctccacg agcgccagcg cgaggtcgat
      301 cccggcactc gcgccggcgg acgtccagat cggtccatct gcgacaaaga tccggtcctc
      361 ctccatcttg acctgcggaa acgcgcgctg aagcgcccgc gcgaagtacc agtgcgtggt
      421 agcgcggcgg ccgtccagca agcccgcctc ggccaggaca aacgcgcccg tgcaggtcgc
      481 cgcgatgcgt tgtgatgtct tcagcgcgtc gcgaagaaat gctgccacgc cggctgactg
      541 cggcgtgccc gtgttgtcgc cggagacgat cagcgtgtgg aacgcgctgt ccttgaaact
      601 cgcggtctca atgccgaatc ctaacgagga acgcacggag ccgccgtgtt ccgacaacaa
      661 ctgcacctcg tacgcggttt gtccgacggt ggcgttggca aattcgaaca cggtcgagac
      721 tgccagcccc agcacctgga agtccggata aacaatgatt ccgatcgttt tcacatggcc
      781 tcctgcacgc cgggaaaggg attccgggaa atgtcctaaa aagttgcatc tatgtcattg
      841 aggacatgat cgcacacttc tactattccg ttcacacacc ggcgcctctg ccggaacact
      901 tgaaaaactg gagaacggaa atgagcaatg tagcgaacaa aggcacggcc ctcgtgacgg
      961 gcgcttcgac cggcattggc gcgatttacg cgaaacggct cgccgaacgg ggttatgacg
     1021 tcatcctggt ggcacgcaat cgcgaccgcc tgaacgcgct ggcaacgacg ctgacaacgt
     1081 ccaccggacg gaatttcgag gttgtcgtcg cggatttggg gacgcccgaa ggcgtgcgaa
     1141 aggttgaaga catcttgcgt aatgactcca gcatcacgat gctggtgaac aatgccggtg
     1201 tgggtgcgac cgcctcgctc gttgattcgg acatcgacaa aatggacgcg atgatcaccc
     1261 tcaatgtggt cgcgctcacg catttgacga aggccgtcgt accgggtttt gtcgcgcgtg
     1321 gcggcggaac gatcgtgaac atttcatcga ttgtcgctgt gtcgccggag acgctgaacg
     1381 gcgtgtacgg cggcagcaag gcgtacgtgc tcgcgttgac ccagtcgctg caccatgaac
     1441 ttggcgcgaa gggcgtgcgg gtccaggccg tgttgccggg cgcgaccagc acggagttct
     1501 gggacatcgc gggcacgccg gtgagctatc ttccggagag catcgtcatg acgtcggaag
     1561 acatggtgga cgcggcgctc gcaggcctcg accagggcga gctggtaacc attccctcgt
     1621 tgccggaagc ggctgactgg aacgtgtttg aggcggctcg ccagacgttg gcgcctaacc
     1681 tttcgcatcg gttgccggcg gcgcgttatg gcgtaacgag cggcacgcag cactaagcga
     1741 ttgtgtagcg agtggctcaa tgccggcgcg ttcccttcaa gcgcaatcac cgctctttaa
     1801 gggaatggcg tgtcagcgca ttgggccgcg ttgaagaatc cttaagcctg tttgtaaatc
     1861 tgtttgtaag attcgactta gccaagctga atacggcagt tgcgattcgc caagaccttc
     1921 tagccgcgga ctagacgcaa ttgccttagc tctctaaggc tgtctaaacg ctctttagcg
     1981 ccccatcctc cgaatagcgc gcagcaatgc gctcatttcc cgccgtcacg ccgatagcaa
     2041 ctatcgtaac cttcgtgatg ggcgcttccc tttcccgctg acgtgcgaac caccgcgcat
     2101 cgattccatg ccatgtggcg cgaggcgatc gcactccgac agaatccgct gacccaagtt
     2161 tcgacgaccc actcatgaca tctgtcccaa caagcgcacc tcccattgcg gactggcatc
     2221 agtcggctgc ttcgctatgc ctggccggac actatgcgca agcgttgtcg atggtcaagc
     2281 cgatgcttga accgcatccg gctttgacgg gaagcgcgct ggcggaggcc ttgaacatag
     2341 cggcggtctg ttcgttagcc ctgagccaac tggcggacgc gcaagcgtat tggcggcatg
     2401 ctatcgaggc caagcccgat ttcgtcgatg cttataacaa cctcggcatg ctgcttaagg
     2461 gacttggctc tctggcggag gcggaggtta tctatcggca actgctgggc attcgcccgg
     2521 accttgccga ggccagcaac aacctgggcg cggtgctcta cgatctcgga cgcctgcatg
     2581 acgccgaggc ggcgtaccgg catgcgcttg cgatccgtgc ggattacgcg caggcccact
     2641 acaacctggg catcgtgctc tatgacctgc gccgttggca cgaagcggag agtgcctacc
     2701 ggcaggcatt ggttctatct cccgatgccg gggcatacaa caacctgggc aatgtactca
     2761 aggaactcgc ccgactgcca gaagccgagg cggcgtaccg gcaggcgctg attctccagc
     2821 ctcaatacgc cgaggcgctc aacaacctgg cgaacgtgct caaggaacta ggccgcgtgc
     2881 ccgaggccga gctggcttgc cggatggcgc tgactatccg ccccgattgc gctgaagctc
     2941 accttaacct gggtgcggtg ctctacgatc tcggacgcct gc
//
LOCUS       DATGBK010000776         2708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_55905, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000776 DATGBK010000000
VERSION     DATGBK010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55905"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..874
                     /locus_tag="VKJ77_10915"
     CDS             <1..874
                     /locus_tag="VKJ77_10915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HMC45824.1"
                     /translation="FGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGKKYQPEVGHDT
                     TLSTGLTKAARAMQKSDDESRSRQRNNVAIWEELGLHCSSNERRADEASRDVEAWLKC
                     YFMRDKLGEEYGGMVNGVTTFGIFVQLDSLFIEGLVHITELGADYFQYDEVKNELRGE
                     RTGIRYRMSDRVRVQVSRVDLDSRKIDFRLVRDTPVKPPGRTTAPAVEHSAMNGVGAG
                     AGPRVRPFPSDEGSSVNSRRRDRGGKKAASQALGKAAAAALPPTIAKDVAVAKKRGAA
                     PKAAAKSHPPRKKR"
     gene            988..1731
                     /gene="rlmB"
                     /locus_tag="VKJ77_10920"
     CDS             988..1731
                     /gene="rlmB"
                     /locus_tag="VKJ77_10920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004191786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HMC45825.1"
                     /translation="MSRLKVLYGFHAVTARVRADASTIEEILYDPTRKDRRMTDFLRT
                     AKEAGIRLIAADEARLWGLSGNVGHQGVVARATDMPLAQNLAELLDGVSGTPLLLVLD
                     GVTDPHNLGACLRVADAAGAHAVIAPRDRSAGLNATAAKVASGAAETVPYITVTNLAR
                     ALRELKDAGVWVIGTSGDATASVYDTKLDGPVAIVVGAEGEGMRRLTGETCDEIMKIP
                     MAGSVESLNVSVASGICLFEAVRQRSVKK"
     gene            1741..2571
                     /locus_tag="VKJ77_10925"
     CDS             1741..2571
                     /locus_tag="VKJ77_10925"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017332469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HMC45826.1"
                     /translation="MRFSSAVICSVCCALLAACSSSEINRGAYIADTRYHAPSADSRV
                     RFLVMHYTQGNEARSLAVLTGDDVSVHYVVPDNPPIENGEPVVYQLVPESERAWHAGQ
                     SEWQGTTELNAASIGIENVNVGPIDTPQGRTWQPYPPAQVDALVKLAKDIVTRYKIPP
                     TRVVGHSDIAPQRKTDPGPAFPWRTLYDNGIGAWPDDATVAQRLAGRDPKSLVDVAAL
                     QHKLQRYGYDVATDGVLDDKSRRVIAAFQMHFRPVDYAGNPDAQTDAIAAALLDKYFP
                     "
     gene            2587..>2708
                     /locus_tag="VKJ77_10930"
     CDS             2587..>2708
                     /locus_tag="VKJ77_10930"
                     /inference="COORDINATES: protein motif:HMM:NF016161.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HMC45827.1"
                     /translation="MSDLYLPLRSVHMTCAAFSILGFVIRTIWMLRESPLLQKRA"
BASE COUNT          526 a          820 c          875 g          487 t
ORIGIN      
        1 cttcgggctc gcatatgaag cgtatgcgca cttcacgagc ccgattcgcc gataccccga
       61 cttgctcacg catcgcgcga tctatgccat cttgcagggc aagaagtatc agcccgaagt
      121 tggccacgac accacgctca gcacgggcct gacgaaggcc gcgcgggcga tgcagaaatc
      181 cgacgacgaa tcgcgcagcc gtcagcgcaa caatgtcgcg atctgggaag agctcggact
      241 gcattgttcg tcgaatgaac gtcgtgccga cgaagcgtcg cgcgacgtgg aggcctggct
      301 caagtgctat ttcatgcgcg acaagctcgg cgaggaatac ggcggcatgg tgaacggcgt
      361 gacaacgttc gggatcttcg tacaactgga ttcgttgttt atcgaagggc tggtgcatat
      421 caccgaactt ggcgccgact acttccagta cgacgaggtc aagaacgagt tgcgcggcga
      481 acgcacgggc attcggtacc ggatgtcgga ccgggtgcgc gtgcaggtca gccgtgtcga
      541 cctggattca cgcaagatcg acttccggct ggtccgtgat acacccgtca agcccccagg
      601 acgcaccacg gcgcctgccg tcgagcactc cgccatgaat ggcgttggtg cgggcgcggg
      661 accccgtgtg cggccgttcc cgtcggacga aggcagcagc gtgaatagcc ggcggcgcga
      721 tcgcggcggc aagaaggcgg cgtcccaggc tttgggcaag gcagccgcgg ctgcactgcc
      781 gcctactatc gccaaggatg tagcggtggc gaagaaacgc ggtgcggccc cgaaggcggc
      841 ggccaagagt cacccgccac gcaagaagcg ctgaggcgcg cggtagcgac gaaggcgacg
      901 cgcctcagtt tgaaatgcgc ggcccgatgc atcatgcacc gggccgcgtt tccattttgt
      961 tttgtttgaa tacggtctgg tccagtcatg tcacgtctca aagttttgta tggttttcac
     1021 gcggtgaccg cacgggttcg cgccgacgca tcgacgatcg aagaaattct ctacgatccg
     1081 acccgcaagg accgccgcat gacggatttc ctgcgcacgg cgaaggaagc gggcattcgc
     1141 ctgatcgccg ccgatgaagc gcgcttgtgg ggcctgtcgg gcaacgtcgg ccatcaaggt
     1201 gtggtcgcgc gcgcaaccga catgccgctc gcgcagaacc tggcggaact gctcgacggc
     1261 gtgagcggca cgccgttgct gctggtgctg gatggcgtga ccgacccgca taacctcggc
     1321 gcgtgtttgc gtgtagccga tgccgccggc gcgcatgcgg tgatcgcccc gcgcgatcgt
     1381 tcggccggac tgaacgcaac tgccgcgaag gtcgcgagcg gcgcggccga aaccgtgccg
     1441 tacatcacgg tgacgaatct ggcgcgtgcg ttgcgcgagt tgaaggacgc gggcgtgtgg
     1501 gtgatcggta catcgggcga tgccacggcg agcgtctacg acacgaaact cgatggtccg
     1561 gtggccattg ttgtcggcgc ggaaggcgag ggcatgcgac gcctcaccgg cgaaacctgt
     1621 gacgagatca tgaagatccc gatggcgggc agcgtcgaga gtttgaatgt gtcggtggca
     1681 agcgggattt gcttgttcga agcggtgcgg caacggtcgg tgaagaagta agcgcacgcg
     1741 atgcgattta gctctgccgt catctgcagt gtgtgctgcg cgctgcttgc agcgtgctcc
     1801 agcagcgaga tcaatcgcgg cgcctatatt gccgacacgc gctatcacgc gcccagcgcc
     1861 gactcgcgtg tacgctttct tgtcatgcac tacacgcaag gcaacgaagc gcgatcactc
     1921 gcagtcctga ctggcgatga cgtcagcgtg cactacgtcg tgcccgataa tccacccatt
     1981 gagaacggcg agccggtggt ctatcagctc gtaccggaat cagagcgggc gtggcatgca
     2041 ggccaaagtg agtggcaggg aacgacggag ttgaacgccg cgtctatagg cattgaaaac
     2101 gtcaatgtgg gtcccatcga tacaccgcag gggcgcacct ggcagccgta tcctccggcc
     2161 caggtcgatg cgctcgtgaa gttagcgaag gacattgtca cgcgctacaa gattccgccc
     2221 acgcgcgtgg tgggtcatag cgatatcgcg ccgcaacgca agaccgatcc gggtccagca
     2281 ttcccctggc gcacgcttta cgacaacggt attggcgcgt ggccggatga cgcgacagtg
     2341 gcacaacgtc tcgccggacg cgatcccaag tcgctggtcg acgtggccgc cttgcagcat
     2401 aaactccagc gatacggcta tgacgtcgcg accgacggcg tgctcgacga caagtcgcgc
     2461 cgcgtgatcg ccgcattcca gatgcacttt cgccccgttg attacgcggg caaccccgat
     2521 gcgcaaacag atgcaatcgc ggccgcgttg ctcgataaat acttcccata aaggcccttc
     2581 gcgcccatgt ccgatctcta tctgccgctg cgctccgtgc atatgacgtg cgcggcgttc
     2641 agcatcctgg gctttgtcat ccgcactata tggatgctgc gtgaatcgcc gctactgcaa
     2701 aaacgcgc
//
LOCUS       DATGBK010000777         1820 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_194997, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000777 DATGBK010000000
VERSION     DATGBK010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194997"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(170..1012)
                     /locus_tag="VKJ77_10935"
     CDS             complement(170..1012)
                     /locus_tag="VKJ77_10935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006225741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45828.1"
                     /translation="MRSRAHGANVLRRLVRNPQAMLGATVILIFLIMAIAAPLLMPAD
                     PFAASMFNRLKPIGTPGYLLGTDELGRDMLSRLILGARLSLFMGVTPVLLAFGIGGAL
                     GIMAGYAGGVLNALVMRTIDVLYAFPSVLLAIALSGALGTGIGNALVSLTVVFVPQIA
                     RIAESVTTQVRRSDFVDAARASGASALTIVRVHVLGNVIGPIFVFSTSLISVSMILAS
                     GLSFLGLGVTPPNPEWGLMLNTLRTAIYVQPWLAALPGVFIFATSIAFNVLSDGLRAA
                     MEIK"
     gene            complement(1070..>1820)
                     /locus_tag="VKJ77_10940"
     CDS             complement(1070..>1820)
                     /locus_tag="VKJ77_10940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008333682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45829.1"
                     /translation="VWRALHGDLGTSIATGRPVAGEVIKAVGNTMMIAALATLIGFAF
                     GALFGFVAGYMRGSWIDRAASLVSVTGVSVPHYWLGMVLVIVFSVKLMWLPATGAGPD
                     GSADWHWDWAHFQYLVLPAVTMSFIPMGIIARTVRALVADTLSQEFMVGLRARGLSEF
                     ALFRHVLKNCAPTALAVMGLQLGYLLGGSILIETVFSWPGTGFLLNAAIFQRDLPLLQ
                     GTILVLALFFVILNLLVDILQTVFDPRIERG"
BASE COUNT          408 a          562 c          586 g          264 t
ORIGIN      
        1 ttcaatacat cgaacgatat gttatcgacc gcacgcacca cgttgcgcgc gtcctttaga
       61 aacggcagcc ctttgttgcc gagcggaaaa tgccggacca catgctttac gctcagcaac
      121 ggctgggccg ggccgccgat gtcacgatcg tctgtcatga gcgagggcat catttgatct
      181 ccatcgcggc gcgcagtccg tcggacagca cgttgaaagc aatcgaggtc gcgaagatga
      241 acacgcccgg cagcgccgcg agccagggtt gcacatagat tgccgtgcgc agggtattga
      301 gcatcaggcc ccactcgggg ttcggcggcg tgacgccgag gccgaggaaa gagagaccgg
      361 aggcgaggat catcgagacc gaaatgaggc tggtggagaa gacaaagatc ggtccgatca
      421 cgttgccgag tacatgcacg cgcacgatcg ttaaggcgct cgcccccgac gcgcgcgcgg
      481 catccacgaa atcactgcgg cggacttgcg tggtcacgct ctcggcaatc cgcgcgatct
      541 gcgggacgaa caccacggtc aacgatacca gcgcgttgcc aatgcccgtg cctagcgcac
      601 ccgataacgc gatggccagc agcaccgacg gaaacgcgta tagcacatcg atcgtgcgca
      661 tcacgagcgc gttgagcaca ccgcctgcgt aacccgccat gatcccgagc gctccgccaa
      721 taccgaacgc gagcaggacc ggtgtcacgc ccatgaagag cgacaggcga gcgcccagga
      781 tcaggcggga cagcatgtcg cggcccagtt cgtcggtgcc gagcaaatag ccgggagtgc
      841 cgatcggctt gaggcggttg aacatggatg cggcgaacgg atcggccggc atcaggagcg
      901 gcgcggcaat ggccatgatc aggaagatga ggatcacggt ggcaccgagc attgcctggg
      961 gattgcggac caggcgccgc agcacgtttg cgccgtgtgc gcgcgagcgc aacggcgtgg
     1021 caaggggctt ggtggtgtcg ccggtggtgg tgatagtcgt ggtcacggct cagccccttt
     1081 caatacgcgg atcgaagacg gtttgaagga tgtcaaccag gagattcagg ataacgaaga
     1141 ataacgcgag caccaggatc gtgccttgca gcagcggcag gtcccgctgg aagatcgcag
     1201 cgttgagcag gaaaccggtg cccggccagg agaatacagt ctcgatcaga atcgatccgc
     1261 cgagcagata gccgagttgc aggcccatca ccgccagcgc ggtcggcgcg cagttcttca
     1321 gtacatggcg gaacaaggcg aactcgctca agccacgcgc cctcaatccg accatgaatt
     1381 cctgcgacag cgtatcggcc accagcgcgc ggaccgtccg cgcgatgata cccatgggga
     1441 tgaacgacat ggtgaccgcg gggaggacga gatactggaa gtgcgcccag tcccaatgcc
     1501 agtcggccga accatccggt cctgcgcccg tggcgggcaa ccacatcagc ttcacggaga
     1561 acacaatcac gaggaccatg cccagccagt aatgcggcac gctcacaccg gtgaccgaga
     1621 cgagcgaagc cgcgcggtca atccacgagc cgcgcatata gcccgcgaca aatccgaaca
     1681 acgcgccgaa cgcaaagccg atcagcgtgg ccagcgcggc gatcatcatc gtattgccga
     1741 ccgccttgat cacttcgccg gcgaccgggc ggccagtggc gatagaggtg ccgaggtcac
     1801 catgcagcgc gcgccagacc
//
LOCUS       DATGBK010000778         1542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_195003, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000778 DATGBK010000000
VERSION     DATGBK010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195003"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..760)
                     /locus_tag="VKJ77_10945"
     CDS             complement(20..760)
                     /locus_tag="VKJ77_10945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45830.1"
                     /translation="MNASAFVRIAIVTFALPLLGAAEAPVGGITIGSTIAAMIRENGI
                     PASVETVDTGNRFTYANAVAYANDDGVVVAAETATGTIPIEIEGKPKMFAIGTYTSAQ
                     ADKDLATVAEFASDTARTYRLSSVRELVLTFDKTTHVLARVSYGQRGQLARMGIISGD
                     DTLKAVPYKAPKIRTTALKDGTGTHVTIVKLDVGRAGDVKTVTVVVPSDDPAFDASLS
                     KTLLTDRFIAAQLGGRAIGAAYFRELRH"
     gene            complement(757..1257)
                     /gene="rimI"
                     /locus_tag="VKJ77_10950"
     CDS             complement(757..1257)
                     /gene="rimI"
                     /locus_tag="VKJ77_10950"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: protein motif:HMM:TIGR01575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HMC45831.1"
                     /translation="MNAADIERVLEIEVLSFSSSWPKDAFANEVRENKLAHYFTGRLD
                     GRIVAYGGIWVILEDSHVTTIAVHPDLRGRKLGEEMLIHLLDAAIDNGASWITLEVRE
                     SNEVAQKLYRKYGFTIVSTRRGYYSDNNENALVMWAGNLKGPLYASRLTVLKANLARD
                     IAQERT"
     gene            complement(1348..>1542)
                     /locus_tag="VKJ77_10955"
     CDS             complement(1348..>1542)
                     /locus_tag="VKJ77_10955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45832.1"
                     /translation="DAADVAAGIRGRGLLLRALPAPNANPALTIAALARLREPSASLH
                     ALNPDYGEVPAVTTPKERTR"
BASE COUNT          292 a          455 c          459 g          336 t
ORIGIN      
        1 aaatcaaggc cgctttcgat caatgccgca gctcgcgaaa gtacgctgcg ccgatggcgc
       61 gcccaccgag ttgggcggcg ataaaacgat cggtgagcag cgtctttgag aggcttgcgt
      121 caaacgccgg atcgtccgac ggcacgacga ccgttacggt ttttacatcg cccgcgcggc
      181 caacgtcaag ttttacgatc gtgacatgcg tgccggttcc gtcttttaat gccgtcgtcc
      241 gaattttcgg cgccttgtac ggtacggctt tgagcgtatc gtcgcccgag atgatgccca
      301 tgcgcgcgag ttgaccgcgc tggccgtacg acacgcgcgc gagcacatgc gtcgtcttat
      361 cgaaggtcag cacgagttcg cgtacggatg agagccggta cgtgcgagcg gtgtcgcttg
      421 cgaattccgc aacggtggca aggtctttat cggcttgcgc gctcgtgtac gtaccgatgg
      481 caaacatttt cggcttaccc tcgatttcga tggggatcgt gcccgtcgcg gtttctgcgg
      541 ccacgacgac accgtcatca tttgcatacg ccacggcgtt cgcgtacgta aagcgattgc
      601 ccgtatcgac cgtttcgacg cttgccggaa tgccgttttc gcgaatcatg gcggcgatcg
      661 tcgatccgat cgtgataccg ccgaccggtg cttccgccgc tccaagcaac ggcagcgcaa
      721 acgtgacgat tgcaatgcga acgaacgcgg acgcgttcac gtacgctcct gcgcgatatc
      781 gcgcgctaag tttgctttga gcaccgtaag gcggcttgcg tacaatggac ctttcaagtt
      841 gccggcccac atcacgagcg cattctcatt gttatcgctg taatagccac ggcgcgtcga
      901 aacgatggtg aaaccatact ttcgatataa tttttgcgcg acttcgttcg attcgcgcac
      961 ctcaagcgtg atccacgatg caccgttgtc gatcgcggca tccagtaaat gaatgagcat
     1021 ttcctcaccg agtttgcggc cgcgaaggtc gggatgaacc gcgatcgtgg tcacgtgtga
     1081 atcttcgagg atcacccaaa ttccgccgta tgctacgatg cgtccgtcga gccgtccggt
     1141 aaagtaatgc gcgagtttgt tttcgcgcac ttcgttcgca aacgcatcct tcggccatga
     1201 cgatgaaaac gagagtacct caatctcaag aacgcgctcg atatcggcgg cgttcatctc
     1261 gctaacggct aaccggttgg gtcgtccgcc ggactcgggg ggcggttcga gctcggcctt
     1321 aatcggacgc ggctcccaga tgcgtattca tcgtgtgcgt tccttcggtg tcgtgacggc
     1381 cggaacttcg ccataatcgg gattgagtgc gtgcagcgaa gcgctcggct cacgcaggcg
     1441 agcgagcgcg gcgatcgtca gggccggatt cgcgttcggc gcgggaagcg cacggagaag
     1501 cagcccgcgc ccgcgtattc ccgccgcgac gtcggcagca tc
//
LOCUS       DATGBK010000779         2347 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147969, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000779 DATGBK010000000
VERSION     DATGBK010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147969"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1065)
                     /gene="shiA"
                     /locus_tag="VKJ77_10960"
     CDS             complement(<1..1065)
                     /gene="shiA"
                     /locus_tag="VKJ77_10960"
                     /inference="COORDINATES: protein motif:HMM:NF007414.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate transporter"
                     /protein_id="HMC45833.1"
                     /translation="MTIAIQPSDVAAVGREKSRARKAALGSFVGAVVDWYDFLLYGII
                     AAIVFNTEFFPKVSPAMGTLAAFGTFGVGFLFRPLGGFVFGHYGDRLGRKRMLVLTVM
                     MMGLSTAMIGLLPTFASIGWWAPALLVTLRAVQGFAVGGEWGGAALMAVESAPGKKKA
                     FYSSGVQVGYGVGLVLATGIVSILSQTMDDATFKAWGWRIPFVFSVVLVLIGLWVRSS
                     MEESQEFVKKVIEKGQRTGRLPIFEALRQHPKAFLLIIALRLAELFTMYIVTAFALSY
                     STTNLGMPRQFFLNIGLLVGAVSIVTIPCFAMLADRFGRRRIYMIGAVVGMLSAIPFF
                     LALDARSTVWIVIFSVMLANI"
     gene            complement(1247..2155)
                     /locus_tag="VKJ77_10965"
     CDS             complement(1247..2155)
                     /locus_tag="VKJ77_10965"
                     /inference="COORDINATES: protein motif:HMM:NF020090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HMC45834.1"
                     /translation="MRITGTTRIFYCIADPVDQVRAPEVFNEVFVRHEVDAVMVPLRV
                     TTGHLAATLRCLLASPTVGGVSLSIPHKGAAAATVDHCSRAALAANAVNAIRRNPDGE
                     LEGDLFDGVGFIRSMDRAGLAYAGRRILMLGAGGAASAVATALAAAGVAELALFDPDH
                     SKAQHLAAVLRRDFHIEASDVPTNDPQDYDVVINASPLGLKDSDPLPVDVGAIREDAV
                     VCDILMKNQPTPLLRAARSRGLIAEPGFDMLIQQTPLYLEFFGYPELAASVHSDDWYL
                     LDLITPDALRRRSDVSVRPQITDIPA"
BASE COUNT          522 a          719 c          696 g          410 t
ORIGIN      
        1 gatgttcgcc agcatcaccg agaagatcac gatccagacg gtcgagcggg cgtcgagtgc
       61 gaggaagaat ggaatggcgc tgagcatgcc gaccaccgca ccgatcatgt agatgcggcg
      121 gcggccaaaa cggtcggcga gcatcgcgaa acatggaatg gtcacgatgc tgaccgcccc
      181 gacgagcaag ccgatgttca ggaaaaattg gcgcggcatg ccgaggttcg tcgttgaata
      241 gctgagcgca aatgccgtga cgatgtacat cgtgaagagt tcggcgaggc gcagcgcgat
      301 gatcagcaag aatgctttcg gatgctggcg caacgcttcg aagatcggca ggcgcccggt
      361 tctctggccc ttctcgatca ccttcttaac gaactcctgc gactcctcca tgctcgatcg
      421 cacccacagc ccgatcagca ccagcaccac gctgaacacg aacgggatgc gccagcccca
      481 agccttgaag gtggcgtcgt ccatggtctg gctgaggatc gagacaatac cggttgcgag
      541 caccagtccc acgccgtagc cgacctgcac gccgctgctg tagaacgcct tctttttgcc
      601 gggcgcgctt tccaccgcca tcagcgccgc gccgccccac tcgccgccaa cggcgaagcc
      661 ctggacagca cgcaaggtga cgagcaaggc cggcgcccac cagccgatgg acgcgaacgt
      721 gggcagcaaa ccgatcatcg cggtcgaaag acccatcatc atcaccgtca gcaccagcat
      781 gcgcttacgg cccagccggt cgccatagtg gccgaacaca aagccgccca gcgggcgaaa
      841 caagaagcct acgccgaagg tcccgaacgc tgcgagcgtg cccattgcag ggctgacttt
      901 cggaaagaac tcggtattaa aaacgatcgc ggcgatgatg ccgtagagca ggaagtcgta
      961 ccagtcgacc actgcaccga caaaactgcc aagcgccgcc ttgcgtgccc ggctcttctc
     1021 ccgaccgact gctgcgacgt ccgaaggctg gatagcgata gtcattacgt tgtctctgat
     1081 gtgtattgat gttgggctgc gggacgtgtc cggcaggtaa aagcgcatgg cgcgccgcag
     1141 tgagtggagc atagggcggc ggcttcaccc gatcaatgct tgccgcgaaa ataaaattga
     1201 ttatcgaacg cttatgtgcg attaacgatc gtttctgggg ttagcactaa gccggaatgt
     1261 cggtgatttg cgggcgcacc gagacgtctg aacggcgacg cagcgcgtcc ggcgtgatca
     1321 ggtccagaag ataccaatcg tccgaatgca cggacgcagc aagctccgga taaccgaaaa
     1381 actcgagata gagcggcgtc tgctggatga gcatgtcgaa gccgggttct gcaatcagcc
     1441 cccgtgagcg ggccgcgcgc aacaacgggg tgggctggtt tttcatcagg atgtcgcata
     1501 cgaccgcgtc ttcccgaatc gccccgacat ccacgggcag cgggtcgcta tccttcaaac
     1561 cgagcgggga tgcattgatg accacgtcat aatcttgcgg atcattagtc ggtacatcgc
     1621 tagcctcgat gtggaaatcg cgcctcaaca cggcggcgag atgctgcgct ttactgtggt
     1681 cggggtcgaa gagcgcgagt tcggccacac cggctgctgc cagcgcggtc gccaccgccg
     1741 atgctgcgcc gcctgcgccc agcatgagga tccggcgacc cgcgtaagcc aggcctgcgc
     1801 gatccatcga gcggataaaa cctacgccat cgaacaggtc cccttcgagt tcgccatccg
     1861 gattgcgcct gatcgcattg accgcattcg cggccagcgc agcccgcgaa cagtggtcca
     1921 ccgtcgctgc cgctgccccc ttgtgcggga tggacagcga cacgccgccg actgtcggcg
     1981 atgcgagaag gcaacgcaac gtagccgcga gatggcccgt cgtgacacga aggggcacca
     2041 tcacggcgtc gacttcatgc cgcacaaata cttcgttaaa gacctcgggc gcacgcactt
     2101 gatccacggg atcggcgatg caataaaaaa tccgggtcgt gccggtgatt ctcatgatgt
     2161 cccccttcgt tccatagctt cgttcatcaa gccggtgaaa caaaggataa ggattggcct
     2221 cgccgacacg aagcaatctt tcgtgaatgt gcgcgataat cgctcataca tcatcactga
     2281 tcgcacggaa tgagggttat tgcttatgac caaacgaccg ccgttagaca agcgcgactg
     2341 gatcgca
//
LOCUS       DATGBK010000780         1582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_217856, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000780 DATGBK010000000
VERSION     DATGBK010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217856"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..948)
                     /gene="urtC"
                     /locus_tag="VKJ77_10970"
     CDS             complement(<1..948)
                     /gene="urtC"
                     /locus_tag="VKJ77_10970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014897856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtC"
                     /protein_id="HMC45835.1"
                     /translation="MNTPNVSANLDVAPQPDEQARREGFALGLPPRVALLPRSGWIAL
                     IAFVIAMGICVPIAALVLPESSTFHLSAYSMTLVGKLMCYAIGALALDLVWGYCGILS
                     LGHALFFALGGYAMGMYLMRSIGREGNYQSDLPDFMVFLDWHKLPWYWQGTEHLWYAL
                     LLVILVPGILAWVFGFFTFRSRVKGVYLSIITQAMTFAAMLLFYRNETGFGGNNGFTD
                     FKRIAGFPITSASTRTVLFLMTLAVLILAFIAARAIVTSKLGRVVTGVRDGEARLMFL
                     GYSPLAYKLFIWTVSAILCGIAGALYVPQVGIINPNEMSP"
     gene            complement(950..>1582)
                     /gene="urtB"
                     /locus_tag="VKJ77_10975"
     CDS             complement(950..>1582)
                     /gene="urtB"
                     /locus_tag="VKJ77_10975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011402087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtB"
                     /protein_id="HMC45836.1"
                     /translation="LKHLYGRPLETLLTTFGISLILIQATRTIFGAQNVQVTNPSWMS
                     GGVSIMQNLILPYNRLTILGFSLVVVLLAWVVLTKTRLGLFVRAVTQNRRMAACVGVK
                     TARVDSYAFAFGAGIAGLGGCALSQIGNIGPDLGQSYIIDSFMTVVLGGVGQLAGTVI
                     GGFGLGLVSKTIEPFWGAVLAKIAVLVLIVLFIQKRPQGMFALKGRSAEV"
BASE COUNT          371 a          491 c          459 g          261 t
ORIGIN      
        1 cggcgacatc tcattcgggt tgatgatgcc cacttgcggc acgtacagcg cgcccgcgat
       61 gccacataaa atggccgata ccgtccagat aaagagtttg taagcaagcg ggctatagcc
      121 caagaacatc agccgtgctt cgccatcgcg tacgcctgtg accacgcgcc cgagcttcga
      181 tgtcacaatc gcccgcgccg cgataaacgc cagaatcagc acggcaagcg tcatcaggaa
      241 caacaccgtg cgcgtactgg ccgatgtaat cgggaagccc gcgatgcgct tgaaatcggt
      301 aaaaccgtta ttgccgccaa agcccgtttc gttgcgatag aacagcagca tcgcggcgaa
      361 tgtcatcgcc tgcgtgatga tcgacaggta cacgcctttg acacgcgaac ggaacgtgaa
      421 gaagccgaat acccaggcga gaatccctgg tacgagtatc acgagcaaca atgcgtacca
      481 aaggtgttca gtgccctgcc agtaccacgg cagcttgtgc cagtcgagga acaccatgaa
      541 gtccggcaga tcgctctgat agttgccctc gcggccaatc gagcgcatca ggtacatgcc
      601 catcgcgtac ccaccgagcg cgaagaacag cgcgtgacca aggctcagaa tgccgcaata
      661 gccccacacg agatcaagcg ccagtgcgcc gatcgcgtag cacatgagct tgccgacgag
      721 cgtcatcgaa taggcgctta ggtggaacgt gctcgactcc ggcagcacga gcgcggcgat
      781 aggcacgcag atacccatcg cgatcacgaa cgcgatcagc gcaatccagc cgctgcgagg
      841 aaggagtgcg acacgcggcg gcaggcccaa cgcaaaccct tcgcgcctgg cttgctcatc
      901 gggttgcggc gcaacatcga ggttggctga gacgttgggt gtattcatct caaacctcgg
      961 cgctacggcc cttcagggcg aacatgccct gaggacgctt ctggatgaac aacacgatca
     1021 gcacgagcac cgcgatttta gcgagcaccg cgccccagaa cggctcgatc gtcttgctga
     1081 caagccccag tccaaagccg ccgatcaccg ttcccgccag ttgcccgacg ccgcccagca
     1141 ccaccgtcat gaacgaatcg atgatgtagc tctggccgag gtccggcccg atattgccga
     1201 tctgcgagag cgcgcaaccg cccagtcccg cgatgcccgc gccgaaggca aacgcatacg
     1261 aatccacgcg tgcggttttt acaccgacgc acgcggccat ccggcggttt tgggtgacgg
     1321 cgcgtacgaa caaacctagg cgcgtcttgg tcagcacgac ccatgcgagc agcacgacga
     1381 ccagtgagaa gccgagaatg gtcaggcggt tgtaagggag tatgagattc tgcatgatgg
     1441 acacaccgcc gctcatccac gaagggttcg tcacctgcac gttctgtgcg ccgaagatcg
     1501 tgcgagtggc ctgaatcagg atcaggctga tgccgaaggt ggtcaacagc gtttcgagcg
     1561 ggcgaccgta gagatgtttc aa
//
LOCUS       DATGBK010000781         2024 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_171504, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000781 DATGBK010000000
VERSION     DATGBK010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171504"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2024
                     /locus_tag="VKJ77_10980"
     CDS             <1..>2024
                     /locus_tag="VKJ77_10980"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HMC45837.1"
                     /translation="IRTGVPVANRQRPETHGVVGFFTNTIVLRSVCTASLSVSGLLTV
                     LRRAAIEGQAHQALPFDVLVERLNPARDAQGLPLFETTFNYLADDYPALERLPGLTAS
                     RYEIEEAHVKVPLALDLRESRGGGMRAYLTYASDLFDATSVEQMAAQYQRVVEAFAAA
                     LLSDDPAADPTLAALNLLDPEEQARVATASRGSETNLSGKPVHVRIASHARVQPEALA
                     LVDGEERLNYRELDQRAQRIACWLLDHGLGVGQPVAIVADRSAAFVVAMLGVLKAGGA
                     YVPLDAGNPPQRLEQTLRGCGARFVLSEKAGLALDDLQQTTIENAEQHTRLLTRELST
                     VDPREAAYVIYTSGSSGTPKGVVIPHAALSNYVEAVLDRLALPPRSTFAMVSTVAADL
                     GHTVLFGALASGGTLHLIDRDTTLDADCFARYMNENKIDVLKIVPGHLNALLQAQNAA
                     DVLPANTLVLGGEATPWPLLYKIRALKPSCRVINHYGPTETTVGILTQDAANADSSAA
                     TLPLGLPLANTSTWVLDAHMNPVGAGEIGELYLGGAGIARGYLGRPGMTAERFVPDPS
                     TPGGRLYRSGDRARRLTNGAIEYLGRIDDQVKIRGYRVEPGEIAARLRVLDGVLDAAV
                     IVSAAGRLAGFATAKAGCTLDTALLKKQLAAAMPDYMVPSSLRVLDALPL"
BASE COUNT          373 a          583 c          667 g          401 t
ORIGIN      
        1 atccgcaccg gcgtgccggt agcgaatcga cagcggcctg aaacgcacgg tgtcgttggc
       61 tttttcacga acaccatcgt gctgcgcagc gtctgtacgg catcgttgag cgtatcgggg
      121 ttactgacgg tgcttcgccg cgcggcgatt gaggggcagg cgcatcaggc actgccgttc
      181 gatgtgctgg tcgagcggtt gaacccggcg cgcgacgcgc aagggctgcc gttgttcgag
      241 acgacgttca actatctcgc cgatgactat ccggcactcg agcgtctgcc cggtctcacg
      301 gcatcgcgct atgagatcga agaagcgcac gtgaaggttc cgctcgcgct tgatctgcgc
      361 gaatcgcggg gaggtggaat gcgtgcttac ctgacctatg caagcgatct attcgacgcg
      421 acgagcgttg agcaaatggc cgcgcaatat caacgagtag ttgaagcgtt tgcagccgcg
      481 ttgctctctg atgaccctgc ggcagatccg accctggcag cgctcaattt gctcgatcct
      541 gaagagcagg cgcgtgtggc aaccgcaagc cgcggcagcg aaacaaacct ctccggtaag
      601 ccggtgcatg tacgcatcgc gagccatgcc cgagtccagc cggaggcgct ggcgctggtc
      661 gatggagagg agcgcctgaa ctaccgcgaa ctagaccaac gcgcgcaacg gatcgcatgc
      721 tggttgcttg atcatggtct tggagttgga cagcctgtgg cgatcgtcgc ggaccgctcg
      781 gcggcgtttg tcgttgcgat gcttggtgtg ttgaaagcag gcggagctta tgttcccctc
      841 gatgcgggta atccgccgca aaggcttgaa cagaccttgc gcggttgcgg agcgcggttt
      901 gtgctgtcgg aaaaggccgg gctcgcgctt gatgatctgc agcagacgac gatcgaaaac
      961 gcggaacaac atacgcgttt gttgactcgc gagctgtcca ccgtggaccc gcgcgaagca
     1021 gcttacgtga tctacacgtc gggctccagc ggcaccccga agggtgtagt gataccgcac
     1081 gccgcgttga gcaattacgt ggaagcggtg cttgaccgtc tcgcgttgcc gccgcgctcg
     1141 acgttcgcga tggtatcgac cgtggcagcg gatctcggcc acaccgtgtt gttcggcgcg
     1201 ctcgcgtcag gcggcacgct gcatctgatc gaccgtgata cgacgctgga cgcagattgc
     1261 ttcgcgcggt atatgaatga gaacaaaatc gatgtactga agatcgttcc agggcatctg
     1321 aatgcgttgc tgcaggcgca aaacgccgca gatgtcttgc cagccaatac gctggtgctg
     1381 ggcggtgagg cgacgccgtg gcctttgctc tacaagatcc gagcgctcaa gccgtcgtgc
     1441 cgcgtgatca atcactatgg cccgaccgag acgaccgtcg ggatcctgac gcaagacgcg
     1501 gcgaatgcgg actcaagcgc ggctaccttg ccccttggct tgccgttagc taatacgtcg
     1561 acgtgggtac tcgatgcaca catgaacccc gtcggtgcag gcgaaatcgg tgaactgtat
     1621 ctgggcggcg cgggtatcgc gcggggttat cttggccggc ccggaatgac cgcggagcgc
     1681 ttcgttcccg atccctctac ccccggcggg cggttgtatc gcagcggcga ccgggcacgc
     1741 cggctgacta atggtgcgat cgaatatctg ggacgcattg acgatcaggt caagatccgc
     1801 ggttatcggg ttgagccggg cgagatcgca gcgcggctgc gtgtgctcga tggcgtgctc
     1861 gatgcagcgg tgattgtctc ggcagcgggg cgtctggctg ggtttgcaac agcaaaggct
     1921 ggatgtacgc tcgataccgc cctgctgaag aagcaactcg cagctgccat gccggactac
     1981 atggtgccgt caagtttgcg cgtgctcgac gcgttgccgc tcaa
//
LOCUS       DATGBK010000782         3342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_240830, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000782 DATGBK010000000
VERSION     DATGBK010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240830"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..1430)
                     /locus_tag="VKJ77_10985"
     CDS             complement(156..1430)
                     /locus_tag="VKJ77_10985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009902905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid deaminase"
                     /protein_id="HMC45838.1"
                     /translation="MKVTNYQSATIDPFGKGLGMVPGVSVHLVDAARLDWNLLDEDVS
                     LPAAVLYADRIEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLDAGAWGITLATA
                     HQVRAAYRGGVHRVLMANQLVGKRNMGMIAELLTDPDFEFHCLVDSADNVDQLGKFFT
                     DVNKHVNVLLELGVAGGRTGIRDDAQRDAVLAAIARWPDAVKLTGVEIYEGVLQDESK
                     VRAFLQNAVDVTRKLVADGKIERKPAILSGAGSAWYDVVADEFAKANSDAIEVILRPG
                     CYLTHDVGVYKKAQNEIFARNPIAKKMGEGLKPALQLWAYVQSIPEPDRVIIGLGKRD
                     AAFDAGMPEPARHFRPGTQWPRDIQTDEGWETFGMMDQHAYLRIKPGDDIKVGDMIAF
                     DISHPCLTFDKWRQILVLDTKYRVKEVIETSF"
     gene            1578..2489
                     /locus_tag="VKJ77_10990"
     CDS             1578..2489
                     /locus_tag="VKJ77_10990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HMC45839.1"
                     /translation="MNVSSEPPVFDIVARIAERAPELRSAERKVAALILDDLTGASRA
                     SIGALAKKAEVSIATVTRFAKAVGCHDVRELKLRLAQAAAVGQRFLRSGSYDETGADD
                     PADSLAARIFDDIQTTLAHNRGALRAAPIAAAADALADAQMIYVFGMGGGSTALADEM
                     RFRLVRLGRPVASYQDGLLQRMVAATLARAHVVVALSVTGQTPDMVESCRIAREYGAR
                     VIALTAPASPLAQLADWLIPIIANETDFIYKPSTSRYAMLMALDLLVTELAVKQGDTS
                     RELLRRMKHALDAYRGGGVDERQPLGD"
     gene            2540..>3342
                     /locus_tag="VKJ77_10995"
     CDS             2540..>3342
                     /locus_tag="VKJ77_10995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC45840.1"
                     /translation="MASDGEHVDTLIKGARVIDGTGAPAVQQDVAVKAGRIVAIGELN
                     GWTAENVVEAEGRVLAPGFIDVHTHDDTHVIRSPQMLPKISQGVTTVIVGNCGISASP
                     VTLKGDPPDPMNLLGERGDFSYPTFAAYIDAVNQARPAVNVGALIGHTALRNNHMDRL
                     DRGASAQEIDGMRAQLEEALAHGALGLSSGLAYGSAFSAPPDEVMALAEPLANAGALY
                     TTHMRTEFDAILDAMDEAYQVGKHARIPVVISHLKCAGPSNWGRSVEVL"
BASE COUNT          618 a          990 c         1055 g          679 t
ORIGIN      
        1 aacgagttcc ttcacgaaac gctgtcgacg cttcccgatg acgccgtcac ggcgctctcc
       61 gacgcgttgc gcacgctgga gcaacggatt caggaagtgg ccgcgggaac ggccgaggtg
      121 agcggcacag acagcgccgc ccttcccgac gaagcctaga acgacgtttc gatcacttcc
      181 ttcacgcgat attttgtatc gaggaccaaa atctggcgcc atttgtcgaa cgtcaggcag
      241 gggtgagaga tgtcgaacgc gatcatgtcg ccgaccttga tgtcatcgcc cggcttgatt
      301 cgcaaatacg cgtgctgatc catcatgccg aaagtctccc agccttcatc cgtttggata
      361 tcgcgcggcc attgcgtgcc gggacggaag tggcgagccg gttcgggcat gccggcgtca
      421 aaggcggcat cgcgttttcc gaggccaatg atcacgcgat ccggctccgg aatcgactgc
      481 acataggccc acaattgcag cgccggcttc aacccttcgc ccattttctt ggcaatcggg
      541 ttgcgcgcga aaatctcgtt ctgcgctttc ttgtagacac ccacgtcgtg cgtcagataa
      601 cagcccggac gcaggatgac ttcgatggca tcgctattcg ccttggcgaa ttcatcggcg
      661 acgacgtcgt accacgccga tcccgcgccc gagagaatag ccggcttgcg ttcgatcttg
      721 ccgtcggcga ccagcttgcg cgttacgtcg accgcgttct gtagaaacgc gcgcaccttg
      781 gattcgtcct gcagcacgcc ctcatatatc tcgacgccgg tgagcttcac ggcatcgggc
      841 cagcgtgcaa tggcggccag caccgcgtcg cgctgtgcgt cgtcgcgaat gccggttcgg
      901 ccgcccgcca cgcccagttc cagcagcacg ttcacgtgct tgttcacatc ggtgaaaaac
      961 ttgccgagct ggtcgacgtt gtccgccgaa tcgacgaggc aatggaactc aaaatccgga
     1021 tcggtgagca actccgcgat catgcccatg ttgcgcttgc cgaccagctg gttcgccatc
     1081 agcacacgat gcacaccgcc gcgatacgcc gcgcgcacct gatgcgcggt ggcaagcgtg
     1141 atgccccacg cgccggcgtc tagctggcgg cgaaacaatt gcggcgccat ggtcgtcttg
     1201 ccgtgcggcg cgagttttac tccgtattcg gccacgaagg cctgcatcca cttcaggttg
     1261 tgctcgatcc ggtccgcgta cagcacggcg gccggcaggc tcacgtcctc gtccagcaga
     1321 ttccagtcaa ggcgcgcggc atccaccaga tgcacgctga cgcccggcac catgcccaga
     1381 cccttgccga aagggtcgat tgtcgcgctt tgatagtttg taactttcat gtgctgctac
     1441 tccatcgtcc gtttgtatag agttcggggc ttgtttttct gcgttcaatt caatatcgag
     1501 attgactcga caatggtaca gaaagtacga tgcccgagac attgttattt agtaccaagc
     1561 acgccgaaag ggttttcatg aacgtgtcgt ccgaaccgcc agtcttcgat atcgtcgccc
     1621 ggattgccga gcgcgcgccc gaattgcgtt cggcggaacg gaaggtcgcg gcgcttattc
     1681 tcgacgattt gaccggcgca tcgcgcgcca gcattggtgc gctcgcaaaa aaagccgagg
     1741 tcagcattgc gaccgtgacg cgcttcgcga aggcggtcgg gtgccatgac gtgcgcgagc
     1801 tcaaattgcg gttggctcag gcggcggctg tcggccagcg gttcttgcgc agcggttcgt
     1861 atgatgaaac cggtgccgac gatcctgcgg attcactcgc cgcccgtatt ttcgacgata
     1921 tccagaccac gctcgcgcac aatcgcggcg cgttgcgggc cgcgccaatt gccgctgctg
     1981 ccgatgcact cgccgatgcg cagatgatct acgtgttcgg catgggcgga ggctcgaccg
     2041 ctttagccga tgaaatgcgc tttcgcctgg ttcggctggg ccggccggtg gcgtcgtatc
     2101 aggatggttt gctgcagcgg atggtcgccg cgacgctcgc gcgcgcgcat gtagtggtgg
     2161 ctttatcggt gacggggcag acgcccgaca tggtggagag ttgccggatc gcgcgggagt
     2221 acggcgcgcg ggtgattgcg ctgacggcgc ccgcgtcgcc gctcgcgcaa cttgccgatt
     2281 ggctgattcc gatcatcgcg aacgaaaccg attttattta caagccttcg acgtcccgct
     2341 acgccatgtt gatggcgctc gacctgctcg tcactgaact tgccgtgaag caaggcgata
     2401 cgagccgcga gcttttgcgg cgcatgaaac acgcgctgga cgcttatcgt ggcggcggtg
     2461 tcgacgaacg tcagcctttg ggcgattgac ctgcgctcaa acaaacgcgc gaattttgag
     2521 gattttcggg agatagagca tggcatcgga tggagaacac gtcgatacgc tgatcaaagg
     2581 cgcgcgggtg atcgatggaa cgggtgcgcc ggcagttcag caagatgtgg cggtgaaggc
     2641 cggccggatt gtcgcgatcg gcgagctgaa cggctggacg gcggagaatg tcgtggaagc
     2701 agaagggcgg gtgctggcgc cgggttttat cgatgtccat acgcacgacg atacccacgt
     2761 cattcgatcg ccgcagatgc tgccgaagat atcgcagggt gtgacgacgg tgatcgtcgg
     2821 caattgcggc atcagcgcgt cgccggtgac gctgaagggc gatcctcctg atccgatgaa
     2881 tttattaggg gaacggggcg atttctctta tccgactttc gctgcttata tcgacgccgt
     2941 gaatcaggcg cggccggccg tgaatgtggg cgcgttgatc gggcatacgg cgctgcgcaa
     3001 caatcatatg gatcggctgg atcgcggcgc gtcggcgcag gaaatcgatg gcatgcgtgc
     3061 tcagctcgaa gaagcgttgg cgcacggagc gcttgggttg agcagcggtc ttgcctatgg
     3121 ctcggcgttc agcgcgccac cggacgaagt gatggcgctg gccgagcctt tagccaacgc
     3181 cggcgcgctg tacaccacgc acatgcgcac cgaattcgac gcgatcctcg acgcaatgga
     3241 cgaggcgtat caggtcggca agcacgcgcg cattcccgtc gtgatctcgc atttgaagtg
     3301 cgcggggccg tcgaactggg ggcgcagcgt tgaagtattg ca
//
LOCUS       DATGBK010000783         1609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_147996, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000783 DATGBK010000000
VERSION     DATGBK010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147996"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1277
                     /locus_tag="VKJ77_11000"
     CDS             <1..1277
                     /locus_tag="VKJ77_11000"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HMC45841.1"
                     /translation="ASKRYVVQKNEETYRSVFTSHFPDEERPAARPAKTSPVYDKLDR
                     LGAVWGQRYGWERANWFAPAGVARHDACSFRRSNYFSHVGNECRLMRERVGVIDLSPF
                     TKHEIAGPGAEAWLDGLVANKVPTKTGRIALCHALTRRGGIRSEFTITKLADEHYYAV
                     SAGAAESYDADYLQSSLPPDRSVSLTNITSSRGCFVLAGPRSREVLAKLADVPLDNES
                     FPWLTGRIAGIGLAAKVYALRVNFVGALGWELHFPIEYAHHLFDALFAAGKEFGIGMV
                     GMRAMESMRMEKSYRMWGSDLTTDYTPFEAGLDRFVRMNKGQFIGKEALEKQRASGVP
                     HRFITLEVHDVGAADPLGNEPLFDADGAIIGRATSGYYGHVLGKSIAMGYVKPELAAT
                     GTELGIEILGERKRATLLMDSPFDTYNQSLKA"
     gene            1292..>1609
                     /locus_tag="VKJ77_11005"
     CDS             1292..>1609
                     /locus_tag="VKJ77_11005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC45842.1"
                     /translation="MKQVFSAFALLKQGLAGQRGWREQWRSPEPKSAYDAVIIGGGGH
                     GLGTAYHLASEHRLANVAVLEKGWIGGGNTGRNTTIIRSNYLFDESTALYDHALKLWE
                     GLSQ"
BASE COUNT          322 a          478 c          498 g          311 t
ORIGIN      
        1 acgcgagcaa gcgctacgtc gtgcagaaaa acgaagaaac ctaccgcagt gtctttacga
       61 gccatttccc cgatgaggag cgccccgccg cgcgcccggc caagacgagc ccggtgtacg
      121 acaagctcga tcgcttgggc gcggtctggg gacaacgcta cggctgggag cgcgccaact
      181 ggtttgcgcc ggcgggagtg gcgcgccacg atgcttgcag ctttcggcgc tcgaactact
      241 tctcccatgt gggcaatgaa tgccgcctga tgcgcgaacg cgtgggcgtt atcgatcttt
      301 cacccttcac caaacatgag atcgcaggtc ccggcgcgga agcctggctt gatgggctgg
      361 tcgcgaacaa agtgccgacg aagaccggac gcatcgccct ctgccacgca ctcacccgcc
      421 gcggcgggat ccgcagcgag tttacgatca caaagcttgc cgatgagcat tactacgctg
      481 tgagcgcggg cgccgccgag agctacgacg cggactacct gcagagctca ttgccgccgg
      541 atcgcagcgt ttctctcacg aatattacgt caagccgcgg ctgcttcgtg ctcgccgggc
      601 cgcgctcgcg cgaggtcctc gcgaagctcg ccgatgtgcc gctcgacaac gagagctttc
      661 cgtggctcac gggccgcatt gctgggatcg gactcgccgc aaaagtctat gcgctgcgcg
      721 tcaactttgt gggagcgctc ggctgggaac tgcattttcc gatcgaatac gcgcatcacc
      781 tgttcgatgc gctgttcgcc gccggcaagg agtttggtat cggcatggtt ggcatgcgcg
      841 ccatggagtc tatgcgcatg gagaagtcct accgcatgtg gggtagcgac ttgacgaccg
      901 actacacgcc ctttgaggcg ggccttgatc ggttcgtgcg catgaataaa ggtcaattca
      961 tcggcaagga agcgctcgag aagcagcgcg caagcggtgt tccacaccgt ttcatcacgc
     1021 ttgaggtaca cgatgtcggc gctgcggacc cgttgggaaa tgagccgcta tttgacgccg
     1081 acggggcgat catcggccgc gcgacctccg ggtattacgg acacgttctc ggcaagagca
     1141 ttgccatggg ctatgtgaaa ccagagttgg ccgcgaccgg caccgagctt gggattgaga
     1201 tcctcggtga acgtaagcgg gcaacactgc tcatggattc accttttgat acatacaatc
     1261 aatcacttaa ggcataaact tcctgtcagt tatgaagcag gtcttctcag cattcgcgct
     1321 tctgaagcag ggactcgcag gccagcgcgg ctggcgcgaa cagtggcgca gccccgagcc
     1381 gaagtccgcc tatgacgctg tcatcatcgg cggcggcggt cacgggcttg gcacggccta
     1441 tcacttggca agcgaacatc ggctcgcgaa tgtcgccgtg ctcgagaagg gctggatcgg
     1501 cggcggcaat actggccgca ataccacgat cattcgctcc aactatttat ttgatgagag
     1561 tacagcgctg tacgatcatg cgctaaagct gtgggaagga ctgtcgcag
//
LOCUS       DATGBK010000784         2429 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_333501, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000784 DATGBK010000000
VERSION     DATGBK010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2429)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2429)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333501"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..511
                     /locus_tag="VKJ77_11010"
     CDS             <1..511
                     /locus_tag="VKJ77_11010"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HMC45843.1"
                     /translation="EYARAGQTVEREARNVTIHVLDLIACALPDVTFRVTCSKGTYVR
                     TLAEDIGETLGCGAHLVALRRTGVGVLTLEHAVTLDTLAEAAPAERDSWLQPVDALLS
                     TFPAVYLDADATRRFTQGQRLKLSDIADAPAEADRVRVYALDDKRLLGVARAGEGVLA
                     PERLVVSAA"
     gene            complement(586..2145)
                     /locus_tag="VKJ77_11015"
     CDS             complement(586..2145)
                     /locus_tag="VKJ77_11015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012492561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HMC45844.1"
                     /translation="MSQPNAAHPPLEGAKLVIGTIAVSLAVFMNVLDTSIANVSIPSI
                     SGDLGVSSDQGTWVITSFAVANAISVPLTGWLTQRFGQVRLFMTSIVLFVIASWLCGL
                     APTLPFLLAARVLQGAVAGPMIPLSQTLLLASYPRAKAPMALSMWSMTTLIAPVAGPI
                     LGGWISDNISWPWIFYVNIPVGIIAAVATFMIFRDRDSVIRRAPIDTVGLGLLVLWVG
                     SLQIMLDKGKDLDWFNSTTIVVLTLIAVISLAFFIVWELTAEHPVVDLSLFKLRNFTG
                     GTIALAIGYGLYFGNLVLLPLWLQTDIGYTATNAGLVLAPVGLFAVLLSPVVGKFLPR
                     IDPRKIATVAFLVFALVFWMRSRYTTGVDTFSLMLPTVIQGIGMAGFFIPLVSITLSG
                     LPGSRIPAASGLSNFVRIMCGGIGTSIFSTAWDHRSNIHHAQLVEQANSYNPNFTASM
                     QQFGAAGFSQSQGYGLFNSMATQQAAQLGVNDLFYISAGIFVALIALIWITKPERSGG
                     GDSAAAASAAH"
     gene            complement(2177..>2429)
                     /locus_tag="VKJ77_11020"
     CDS             complement(2177..>2429)
                     /locus_tag="VKJ77_11020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EmrA/EmrK family multidrug efflux transporter
                     periplasmic adaptor subunit"
                     /protein_id="HMC45845.1"
                     /translation="LRIGLSMNVDVTIKDENGGQLGTAPNTVYQTDVFAKYGDQADAE
                     IARIIEANEGSSGTGTGGAQKSSKENVQPASKQYLAKLM"
BASE COUNT          533 a          711 c          756 g          429 t
ORIGIN      
        1 cgagtacgcg cgtgccgggc agacggtcga gcgcgaagcg cgaaacgtga ctattcacgt
       61 gcttgatctg atcgcgtgcg cgttaccgga cgtgacgttt cgcgtgacgt gcagcaaagg
      121 gacttatgtg cgaacgcttg ccgaggatat cggcgagacg ctgggatgcg gcgcgcatct
      181 ggttgcgctg cggcgcacgg gtgtgggcgt gttgacgctg gagcacgcag tcacgttgga
      241 cacgcttgca gaagccgctc cagccgagcg cgatagttgg ctgcaaccgg tggatgcgtt
      301 gttgtcgacc tttccggccg tttatctcga cgccgatgcc acgcggcgtt tcacgcaagg
      361 gcagcggctg aagttatcgg acattgcgga tgcgccggct gaggccgacc gcgtgcgtgt
      421 ctatgcgctc gacgacaagc gtttgctcgg cgtcgcgcga gcgggtgaag gcgtgttggc
      481 cccggagcga ctggtggtat cggcggcttg aagaacggcc aatgcaatgc aaaaaaaacg
      541 ccacgaaatt ttcgtggcgt ttttttattg cagatcaaac aagcttcaat gcgccgccga
      601 agccgcggcc gctgaatctc cgccaccgga cctctccggt ttcgtgatcc agattaacgc
      661 gatcagcgcg acgaaaattc ccgccgagat ataaaacaaa tcgttcacgc ccaactgcgc
      721 ggcctgctgc gtggccatgc tgttgaagag tccgtaaccc tgcgactggc tgaagccggc
      781 cgcaccgaac tgctgcatgg aagcagtgaa gttcgggttg tacgaattag cctgctccac
      841 gagttgcgcg tgatgaatat tcgaccgatg gtcccacgca gtcgaaaaaa tcgacgtgcc
      901 aataccaccg cacatgatcc gcacgaagtt cgacaagcct gatgccgccg gaatccggct
      961 tcccggcaag ccggacagcg tgatggatac gagcgggatg aaaaatccag ccatgccgat
     1021 gccctggatc acggtgggca gcatcagcga gaaggtatct acgccggtgg tatagcgtga
     1081 acgcatccag aacacgagtg cgaagacgag gaacgcaacg gttgcgatct ttcgcggatc
     1141 gatgcgcggt aggaacttgc cgaccaccgg cgagagcaag accgcaaaca gtccgactgg
     1201 cgcgagcacg aggccggcgt tggtagcggt gtagccaata tccgtctgca accacagcgg
     1261 cagcagcacg agattgccga agtacagtcc ataaccgatc gcgagcgcga tcgtcccgcc
     1321 ggtgaagttg cgcagcttga agagcgacaa gtcgacaacc ggatgttccg ctgtcagctc
     1381 ccacacgata aagaacgcca gcgagatcac cgcgatcagc gtcaacacca caatggtggt
     1441 cgagttgaac cagtcgagat ccttgccctt gtcgagcatg atctgcagcg agccgaccca
     1501 tagcacgagc aggccgagcc ccacggtatc aataggcgcg cggcggatca ccgaatcacg
     1561 gtcgcggaag atcatgaacg tagcgacggc cgcgataata cccacaggaa tgttgacgta
     1621 gaaaatccac ggccaggaga tgttgtccga gatccagccg ccgaggattg gcccggcgac
     1681 cggcgcgatc agcgtggtca tcgaccacat ggagagcgcc atgggcgctt tcgctcttgg
     1741 gtaactcgcg agcagcaagg tctgcgagag cgggatcatc gggccggcga ccgcaccttg
     1801 caacacgcgc gcggcgagca agaagggcag ggtgggcgca agtccgcaca accacgaagc
     1861 gatcacgaac agcacgatcg acgtcatgaa caggcgcacc tgtccgaagc gctgcgtaag
     1921 ccagccggtc agcggcaccg agattgcatt ggcgaccgcg aacgacgtga tcacccacgt
     1981 gccctggtcc gacgataccc cgaggtcacc ggagatcgac ggaatggaca cgttggcaat
     2041 cgacgtatcg agcacgttca tgaacaccgc gagcgaaacc gcgatcgtgc cgatcacgag
     2101 tttcgcgccc tctagcggtg gatgagcggc gtttggttga gacatatgac ggttccagga
     2161 aaacgtgtgc gagctcttac atcagcttgg cgagatattg cttcgacgcg ggctgaacat
     2221 tttccttcga cgacttctgc gcgccgcccg tacccgtacc cgaactgcct tcgttcgctt
     2281 cgataatgcg ggcgatctcg gcgtcggcct gatcaccgta cttggcgaac acgtcggtct
     2341 ggtacacggt gttcggcgca gtgccgagct ggccgccgtt ctcgtccttg atcgtcacgt
     2401 ccacgttcat cgacaaacca atgcgcagc
//
LOCUS       DATGBK010000785         2039 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56016, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000785 DATGBK010000000
VERSION     DATGBK010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56016"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..211)
                     /locus_tag="VKJ77_11025"
     CDS             complement(<1..211)
                     /locus_tag="VKJ77_11025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HMC45846.1"
                     /translation="MSKRLKRVYLAVATALAAITLIGCGTASAVRPTAVDYSLSPDDR
                     IFIQLREAARSNDAGRAMQLAAQIPN"
     gene            235..828
                     /locus_tag="VKJ77_11030"
     CDS             235..828
                     /locus_tag="VKJ77_11030"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HMC45847.1"
                     /translation="MQSIARNPLLETKSTLRANLLATREAQGARADQSARGEALARRL
                     MEAVARYPRASCIGFYWPVAGEFDARDVLTVWLALDASRKAALPVVVAPRAPLVFHAW
                     QPNATMKKGRYGIPVPAEERVVVPDLLVIPCVGFDADRYRLGYGGGYYDRTLADWPRG
                     LAPATIGVAFESAKCDVLPRGEFDLPLGAIVTESAVY"
     gene            complement(875..1387)
                     /locus_tag="VKJ77_11035"
     CDS             complement(875..1387)
                     /locus_tag="VKJ77_11035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006024208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding protein"
                     /protein_id="HMC45848.1"
                     /translation="MPRHPTKIVSSEHLVSETSAELSEFEYGLIMASNAFNRWMVRCM
                     SAAGAKDMTAVEVSLLHHVSHRDRKKKIADICFVLNIEDTHVASYAIKKLMTRGYVKS
                     EKVGKEVFFSATPAGRELCGKYREVRESCLISTLKESGLTNEQIGESAQLLRNASGLY
                     DTAARAAASL"
     gene            1573..>2039
                     /locus_tag="VKJ77_11040"
     CDS             1573..>2039
                     /locus_tag="VKJ77_11040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007742836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allophanate hydrolase subunit 1"
                     /protein_id="HMC45849.1"
                     /translation="MTPPKIHPLGDIALVCEAPPPATIECQRRMWALADAARLWPHVV
                     EVVPGMNNVTLVFDPLQADPAELAQQMKTAWEQAAEVEVGTAEIEIPVRYGGADGPDL
                     ASLAKSLDLSIDELVKRHTQADYIVFFLGFQPGFAYLGGLDPTLHAPRHPKPRL"
BASE COUNT          407 a          593 c          606 g          433 t
ORIGIN      
        1 aattcggaat ttgcgcggcg agttgcatgg cacggccggc gtcattcgag cgcgcggctt
       61 cgcgcaactg gatgaagatg cggtcgtcgg gcgagagcga ataatcaact gctgtcgggc
      121 gcacggcgga agcggtaccg catccgatca gcgtgatggc agcgagcgcg gttgcgacgg
      181 cgagatatac tcgtttgaga cgttttgaca tcgttatttc tggagcgcga agtgatgcaa
      241 agcatagcac gcaaccctct gctggaaacc aaaagcacac tgcgtgcaaa cctgcttgca
      301 acccgcgagg cacaaggcgc tcgggccgat cagagcgcac gtggcgaagc gttggcgcgg
      361 cgtctgatgg aagcggtcgc gcgatatccg agggcgtcgt gcattggctt ttattggccg
      421 gtggccgggg agttcgatgc gcgcgatgtg ctgactgtct ggctcgcgct ggatgcatcg
      481 cggaaagcgg cattgccggt ggtggtcgcg ccgagggcgc cgctggtgtt tcatgcgtgg
      541 cagccgaacg cgacgatgaa gaaggggcgg tatggcattc ccgtgccggc agaggagcgg
      601 gtggttgtgc cggacttgct cgtcatcccc tgtgtgggtt tcgatgccga tcggtatcgg
      661 ctgggatatg gcggcgggta ttacgatcgg acgttagctg attggcccag agggctggca
      721 ccggcgacca ttggggtagc ttttgaatcc gcgaaatgcg atgtcttgcc aagaggggag
      781 tttgatttgc cgctcggggc gattgtgacc gagtcagcgg tttattaacg ccgctccggt
      841 gtacgaaaac cgccgctaac ccagaacgaa acccctaaag cgaggctgcg gcccttgccg
      901 cggtatcgta gaggccggaa gcatttcgca gcagttgcgc cgactcgcct atctgctcat
      961 tggtcagtcc gctctccttc aacgtgctga tcaaacagct ctcccgcacc tcccgatact
     1021 tcccgcacaa ctcccgcccc gcgggcgttg cggaaaagaa cacctccttg cccacttttt
     1081 cgctcttcac atatccccgc gtcatcagct tcttaatggc atagctggca acgtgcgtgt
     1141 cctctatatt gagaacaaag cagatatcgg caatcttttt cttccggtca cgatggctca
     1201 catggtgcag cagcgatact tcaaccgccg tcatgtcctt tgcgcccgcc gccgacatgc
     1261 atcgaaccat ccagcggtta aacgcattgc tggccatgat cagtccatat tcgaactcgg
     1321 acaactcggc gctcgtttca gagacgagat gctcggacga aacgatcttg gtcggatgac
     1381 ggggcatgga tatctatacg ggacaatgtg tcggcgagtg tagcgtatcg aaataaattt
     1441 accgctacgc ctaaattctt attgataaat tgtcgataaa ttattgacaa tgtacattcc
     1501 tgagcttgcg tcgagacggc ttctctttcg cctttcgttc aagcgcgcgc tcgattaccg
     1561 gcaaaaccca gcatgacacc acccaaaatt cacccactcg gcgacatcgc gctcgtatgt
     1621 gaagcgccgc cgcccgccac gatcgaatgc cagcgccgaa tgtgggcgct cgccgacgcg
     1681 gcacgcctgt ggccgcatgt cgtggaagtc gtaccgggca tgaataacgt cacgcttgtc
     1741 ttcgatcccc tccaggccga ccctgccgag ctcgcccagc agatgaaaac cgcgtgggaa
     1801 caagcagcgg aagtcgaggt gggcacggca gaaatcgaga ttcccgtgcg gtacggcggt
     1861 gctgacgggc ccgatcttgc ctcgctggcg aagtcgctcg acctgagcat cgatgaactc
     1921 gtgaagcgcc acacgcaagc cgattacatc gtatttttcc tcggttttca gcccggcttt
     1981 gcctacctcg gtggcctcga tcccacgctg cacgcgcctc gtcatcccaa accgcgtct
//
LOCUS       DATGBK010000786         2213 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_333507, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000786 DATGBK010000000
VERSION     DATGBK010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333507"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1148
                     /locus_tag="VKJ77_11045"
     CDS             <1..1148
                     /locus_tag="VKJ77_11045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018418843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC45850.1"
                     /translation="TGAMRQLSMGNPDRLSTDVGPVIDAEAKQSIDAHIASMREKGRN
                     VVQLPMSDGCAQGTFVPPTLIELDSIDELKREVFGPVLHVVRYRRAHLDKLLDQIKAT
                     GYGLTLGIHTRIDETIAHVVSRAHVGNIYVNRNVIGAVVGVQPFGGEGLSGTGPKAGG
                     ALYLQRLLAKRPTGLPKSLESALIVDQTAANDTPAALTALRDWAIAERDPQTAARCEG
                     HLQHVMAGATAVLAGPTGERNTYTLGARGTVLCVASTASGARAQLAAALATGNKALFS
                     GAAGEQLVAALPAKIAPYASTRKSQDAAFDAVLFEGDSDELMALVKDVAKRPGPIVSV
                     QGVPAGAFADDAHDGEQEYALERLLTERSVSVNTAAAGGNANLMTIG"
     gene            1242..>2213
                     /locus_tag="VKJ77_11050"
     CDS             1242..>2213
                     /locus_tag="VKJ77_11050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC45851.1"
                     /translation="MDYTMKKLAAAMFIAGLSLAGTAQAQTAEDVKVGFAGPMTGAQA
                     HYGKDFQNGVVLAVEDFNATKPVIGGKPIRIVLDSADDQADPRTGTTVAQKLVDDNVK
                     GMLGHFNSGTTIPASRIYANAGIPEIAMATAPEYTTQGYKTAFRMMTSDTQQGSVAGE
                     FAVKTLKMKKIAIVDDRTAYGQGLADQFEKAAKASGATIVDREYANDKAVDFKAILTK
                     IKSLNPDLVYYGGADSQAGPMVKQMKTLGLRAPLMAGEMVKTDTFLKIAGNAADGTVA
                     SLAGLPLDEMPGGAAYVAKYKARFNEDVQTYSPYAYDGAMAMFAAMKS"
BASE COUNT          463 a          630 c          739 g          381 t
ORIGIN      
        1 ttaccggcgc aatgcggcaa ctttcgatgg gaaaccccga tcgtctttcc accgatgtcg
       61 gtcccgtgat cgatgccgaa gcaaaacaaa gcatcgacgc gcacattgca tcgatgcgcg
      121 agaagggccg caacgtcgtg cagttgccca tgtccgatgg ttgcgcacaa ggcacattcg
      181 tcccgccgac gctgatcgaa cttgattcca tcgacgagtt gaagcgcgag gtcttcggcc
      241 cggtccttca cgtagtgcgg tatcgccggg cacatcttga taaactgctc gaccaaatta
      301 aggcgacggg gtacgggctg acgctgggga tccatacgcg catcgatgaa accatcgcgc
      361 acgtggtgag ccgggcgcac gtgggcaaca tctacgtgaa ccggaacgta attggcgcgg
      421 tcgtcggcgt gcagccgttc ggcggcgaag gtttgtcggg cacgggaccg aaagcgggcg
      481 gtgcgctgta tttgcagcgg cttctcgcca agcgtccgac gggcttgccg aaatcgctgg
      541 aaagcgcgct gatcgtggat caaacggctg cgaacgatac gccggctgcg ctgactgcat
      601 tgcgcgactg ggcgatcgcc gagcgtgatc cgcaaacggc ggcacgttgc gaaggccatc
      661 tgcaacacgt gatggccggt gcgaccgccg tgctggccgg cccgacgggt gagcgcaaca
      721 cctacacgct cggcgcacgc ggcacagtgt tgtgcgtggc atcgacggca agcggcgctc
      781 gcgcgcagct cgccgcagcg ctcgccacgg gcaacaaggc gctgttttcc ggtgcggcgg
      841 gtgaacagct cgtggccgcg ttgccggcga agatcgcgcc gtatgcatcg acgcgcaaga
      901 gccaggatgc ggccttcgat gcggttttgt tcgaaggcga cagcgacgaa ttgatggcgt
      961 tagtgaagga cgttgcgaaa cgcccgggac cgatcgtttc ggtgcagggt gtgccggcgg
     1021 gagcattcgc cgacgacgcc cacgacggtg agcaggaata cgcgctcgaa cggttgctga
     1081 cggaacgctc ggtgagcgtg aacacggcgg ccgcgggcgg caatgcgaat ttgatgacga
     1141 tcggctgagc tgttatcagc acggcgggtt ggctcaaaca aacggcagca ggcacggcga
     1201 tcccggcaca cgctgccatc taccagggaa tcaggagagt tatggattac acgatgaaga
     1261 agctggcagc tgcgatgttt atcgctggac tgtcgctcgc gggaacggct caggcgcaga
     1321 cggctgagga cgtgaaggta ggattcgccg gcccgatgac cggcgcgcaa gcgcactacg
     1381 gcaaggattt ccagaacggc gtcgtgctgg cagttgaaga tttcaacgcg accaagcccg
     1441 tgatcggcgg caagccgatt cgcatcgtgc tggattccgc tgatgaccag gccgacccgc
     1501 gcaccggcac gaccgtcgct caaaaacttg tcgatgacaa cgtcaagggc atgctcggtc
     1561 acttcaactc gggtacgacg atccccgctt cgcgcatcta cgcgaacgcc ggcattcccg
     1621 aaatcgcgat ggcgactgcg ccggagtaca cgacgcaagg ttacaagacc gcgttccgca
     1681 tgatgacgtc cgacacgcag caaggatcgg tggccggcga gttcgcggtg aagacgttga
     1741 agatgaagaa gatcgcgatc gtcgatgacc gcacggctta tggacaaggt ctcgctgacc
     1801 agttcgagaa ggccgcgaag gcatcgggcg caaccatcgt ggatcgcgaa tatgcgaacg
     1861 acaaggctgt cgacttcaag gccattctga cgaagatcaa gtcgttgaat ccggacctcg
     1921 tgtactacgg cggcgccgat tcgcaagctg gcccgatggt caagcagatg aagacgctgg
     1981 gcttgcgcgc gccgttgatg gcaggcgaaa tggtcaagac cgatacgttc ctgaagatcg
     2041 ccggcaatgc agcggacggc acggtggcgt cgctggctgg tttgccgctt gatgaaatgc
     2101 cgggtggcgc ggcttatgtt gcgaagtaca aggcgcggtt caacgaagac gtgcaaacgt
     2161 actcgccgta tgcgtacgac ggcgcaatgg ccatgttcgc tgcaatgaag agc
//
LOCUS       DATGBK010000787         1764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_287245, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000787 DATGBK010000000
VERSION     DATGBK010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287245"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..586)
                     /locus_tag="VKJ77_11055"
     CDS             complement(<1..586)
                     /locus_tag="VKJ77_11055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC45852.1"
                     /translation="MADIQNNPGALIPVPTGRFLAGREFWANFSRNRGAVVAGAIVLI
                     LVFIAVFAPLIAPHSPIEQYRDNVKIPPAWLDGGNWRFVLGTDEAGRDILSRLMYGAR
                     LSFWIGFVSVVLALIPGIVLGLIAAFFQKWADTPIMRIMDVLLALPSLLLAVAVVAII
                     GPGLMNTMLAIAIVALPGYVRLTRAAALGELQREY"
     gene            complement(591..1601)
                     /locus_tag="VKJ77_11060"
     CDS             complement(591..1601)
                     /locus_tag="VKJ77_11060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC45853.1"
                     /translation="MFRFVLRRIGMVIPTFIGITILAFALIHLIPGDPIEVMMGERGV
                     DPAMHAEAMKRLGLDLPLPVQYFHYVGHALKGDLGMSIITNTSVMGEFMARFPATLEL
                     AICAMIFALVIGLPAGVAAALKRGTVVDHGVMGTALTGYSMPIFWWGLILIMFFSAKL
                     GWTPVSGRIAVEYDIPHRTGFMLWDALFSDDEGAFKSAVSHLILPTIVLGTIPLAVIA
                     RMTRSSMLEVLREDYIRTARAKGLAPGRVVIVHALRNALIPVVTVIGLQVGTLLAGAV
                     LTETLFSWPGVGKWLIDAISRRDYPVVQGGILMIATLVILVNLVVDLLYGVLNPRIRH
                     TR"
BASE COUNT          402 a          549 c          532 g          281 t
ORIGIN      
        1 cgtattcgcg ctgcaactca ccaagcgcgg ccgcacgggt caaacgcacg tatcccggca
       61 acgcgacaat cgcgatggcg agcatggtgt tcatcagccc cggcccgatg atcgcgacca
      121 ccgcgaccgc cagcagcagc gaaggcagcg cgagcagcac gtccatgatg cgcatgatcg
      181 gcgtatcggc ccatttctgg aaaaatgccg cgatcaaccc aagcacaatg cccggaatca
      241 acgccagcac caccgataca aagccgatcc agaacgacag ccgcgcgccg tacatcaggc
      301 gggagaggat gtcgcggccg gcttcatcgg tacccagaac gaagcgccag ttaccgccat
      361 cgagccaggc cggaggaatt ttcacattat cccgatactg ctcgataggc gaatgcggcg
      421 cgatcagcgg cgcaaagacg gcgatgaaca cgaggatcag cacgatcgcg ccagccacca
      481 cggcgccgcg attgcgcgag aaattggccc agaattcccg gccggcgagg aatcggcccg
      541 tcgggacggg gatcagcgcc ccaggattgt tttggatatc ggccatgggc ttacctcgtg
      601 tggcgaatgc gcggattcag cacgccgtac aacaagtcga cgaccagatt cacaagaata
      661 acgagcgtcg cgatcatcag gataccgccc tgcacgacgg gataatcgcg ccggctgatg
      721 gcgtcgatga gccacttacc cacgcccggc cacgagaaca acgtctcggt cagcacagcg
      781 ccggcgagca gcgtgccgac ctggaggccg atcacggtca ccacgggaat gagcgcgtta
      841 cgcagcgcat gcacgatcac cacgcgtccc ggcgcaagcc ctttggcgcg cgcggtgcgg
      901 atgtaatctt cgcgcagcac ttctagcatc gatgaacggg tcattcgcgc gatcacggcg
      961 agcggaatag tgcccagcac gatggtcggc aggatcaggt ggctgacggc ggacttgaac
     1021 gcgccttcat cgtcggaaaa gagtgcgtcc cacagcatga agccggtgcg atgcggaatg
     1081 tcgtattcca ctgcgatacg cccggaaacc ggcgtccatc ccagcttcgc cgagaagaac
     1141 atgatgagga tcaagcccca ccagaagatc ggcatggaat aaccggtgag ggcggtgccc
     1201 atcacgccat gatcgacgac cgtgccgcgt ttcaacgcag cggcaacgcc ggccggcaat
     1261 ccgatcacca aggcgaaaat catcgcgcag atcgcgagtt cgagcgtcgc gggaaagcgc
     1321 gccatgaatt cgcccatcac gctggtattg gtgatgatcg acatgccgag gtcgcctttc
     1381 agcgcgtgcc cgacatagtg gaaatattga acgggaagcg gcaggtcgag cccgagccgc
     1441 ttcattgctt cggcatgcat cgccgggtcc acgccgcgct cgcccatcat gacttcaatg
     1501 ggatcgcccg ggatcaggtg gattaacgcg aacgccagga tcgtgatgcc gatgaacgtc
     1561 gggatcacca tgcctatgcg ccgcagaacg aatcggaaca tggttcgtct ctttggggag
     1621 gaaaaatgcg accggcgacg cgggcttgtg acccttgtcg ccggaccttt tcgactagtt
     1681 ttagttttgg tgcataaagc gtaccgctac cagcttactg cacgccgaca ccgtcgaaac
     1741 gcaggtaacc cagcggctcg atct
//
LOCUS       DATGBK010000788         2065 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148021, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000788 DATGBK010000000
VERSION     DATGBK010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148021"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            471..1571
                     /locus_tag="VKJ77_11065"
     CDS             471..1571
                     /locus_tag="VKJ77_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018906235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC45854.1"
                     /translation="MATIKDVAAIAGVSFTTVSHVVNNSRPVSAEVRLKVERAIVQLD
                     YVPSAVARSLKARNTLTIGLLVPNATNPYFAELARGVEDGCAKNGYCMFFCNSDDDPA
                     KQRSYLRVLQEKRIDGLVIASAGEDAVLAQSLAGSREPLVILDRNIEGVSADLVQIDH
                     EKGGYLATRHLLQLGHSRVGCITGPIGTAVSAMRVHGFIRAMAERGIEIEPNAIQQSA
                     FSATGGYEAASQLFDTLKPTGIFACNDMMGVGALRAAAERGINVPRDCSIIGFDDIEL
                     SRYTYPALSTVGQSVRELGELAAQTLIDRIAGKVPATTRRRVVTPRMILRESTAVVPE
                     VLPLAYRKDAAAGSAAAANSVAALGQGKTEKA"
BASE COUNT          462 a          558 c          642 g          403 t
ORIGIN      
        1 acgagagaat gggatgatca actcgttttt tcgatgaatg gccaagcgga gcctgggatc
       61 ttgtatctga actttgtggg ccgggtagca gactttgtgg cccggtattg gactagttga
      121 ggtttcgcgc acaagacctg ctgcaaacga ttgcggtcgg aactgtgcag aaatttaagc
      181 atcgccatat tgagttcagc aaggccgcgg agagatgaat gagttgcagc agttgcagca
      241 gttaagcggg cgcaaagcag caaaaagctg cggtgcccgt caagtatgaa agccggcgcg
      301 gggaaaacgc cggtgcaatc gtaatggccg cacacaagca ggcgtagtac gttaagaccc
      361 aagcaggcaa ccggaaacgc aaggctagag tgcagcgcag tgggatgcgc gttgcggggg
      421 ccaattaaga agagcaagaa gcaagaacaa gtcagagaga aggaccaagt atggcgacga
      481 tcaaagatgt agcagccatt gcgggcgtat cgttcactac ggtgtctcat gtcgtgaaca
      541 actcgcggcc cgtttcggct gaggtgcggc tgaaggtgga gcgcgcgatc gtgcaactcg
      601 attacgtgcc ctcggcggtg gcgcgttctc tcaaggcgcg caacacgctc accatcggct
      661 tgctggtgcc gaacgctacc aacccgtact tcgcggaact ggcgcgaggg gtcgaagacg
      721 ggtgcgcgaa gaacggctat tgcatgttct tctgcaattc ggacgacgac cctgccaagc
      781 agcgcagcta cttgcgtgta ttgcaggaaa aacgcatcga cgggctggtg attgcgtcgg
      841 cgggcgaaga tgcggtgctg gcgcaaagcc tggccggttc gcgcgaaccg ctggtgatcc
      901 tggaccggaa tattgaaggc gtatcggcgg atctggtgca gatcgaccac gaaaagggcg
      961 gctatctggc gacccgccac ttgctgcaac tcggccactc gcgggtaggc tgtatcacag
     1021 gcccgatcgg cacggcggtc agcgcaatgc gcgtccacgg atttatccgt gcaatggcgg
     1081 agcgtggcat cgagatcgag ccgaacgcca ttcagcagag cgcattttcg gccaccggcg
     1141 gttacgaagc ggcgtcccag ctcttcgata ccctcaagcc caccggtatt tttgcgtgca
     1201 acgacatgat gggcgtcggc gcattgcgag cggcggcgga gcggggcatc aacgtgccgc
     1261 gtgactgctc gatcatcggt ttcgacgata tcgaattgag ccgatacacc tatccagcgt
     1321 tgtcgacggt tgggcaatcg gtgcgcgaac tcggggagct ggcggcgcag acgctgatcg
     1381 accggatcgc gggcaaggta ccggcgacca cgcgacggcg cgtcgtaacg ccgcgcatga
     1441 tcttgcgcga atcgacggcg gtcgtgccgg aagtgttgcc gttggcttat cggaaagatg
     1501 cggcggccgg atccgctgct gcggcgaatt ccgtggcagc gttgggccag ggcaaaaccg
     1561 agaaggcctg aagcaggcag aggacgttcg cattcggagt tttgccgtgg tcggcgaaac
     1621 tccgttttgt cggcgccttg gcgcgcgcga accactcgcg gcaagggcta taaagctaga
     1681 cctctgcggg ccgccgcgcc cgcagtatct tcactccccc gttcgcacct ttctccccga
     1741 atcaaacctc aaccgattcc gctcgcggtc atcaagccga tggtgcgatt catcttgaat
     1801 cgtttacaac aattgcatta atgcgctctt ttgcttaata acgcgcatct aaagttctca
     1861 gggtaaatca ttagacgaaa taacatttca tgaatttcct caagtgcacc gtgcacacgc
     1921 cgtaaaagat gtccaagcac gcgaatttga tctcgctccg aatcgcgatg tcagaacccc
     1981 gccgtgccga cattttcata cgcagctcca aggaaaatca tgaacatgag tttaacgatc
     2041 aaggcacgtc tcggtctgac gatgg
//
LOCUS       DATGBK010000789         1846 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56029, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000789 DATGBK010000000
VERSION     DATGBK010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56029"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            207..908
                     /locus_tag="VKJ77_11070"
                     /pseudo
     CDS             207..908
                     /locus_tag="VKJ77_11070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006413306.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
     gene            1099..>1846
                     /locus_tag="VKJ77_11075"
     CDS             1099..>1846
                     /locus_tag="VKJ77_11075"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014006152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HMC45855.1"
                     /translation="MKFDRLAQSLLAAALALCYAGAQAASQAPVAAENGMVVTAQHLA
                     TRIGVDVLKDGGNAVDAAVAVGYALAVVYPAAGNIGGGGFMTIQLADGRRTFLDFREK
                     APLAATANMYLDKDGNVIPGLSTKGYLAVGVPGTVSGMEMALTKYGTMKRADVIAPAI
                     KYAQEGFVLDQGDVDILGTATDDFKKDPNGSGAIFLNHGEPYQVGQRLVQKDLAKTLR
                     EISTKGPDGFYKGWVGNALVSSTQAGKGIIT"
BASE COUNT          368 a          560 c          560 g          358 t
ORIGIN      
        1 gtttgcggca cagtcgacga agcatcgggt gtcataagca gataaggaag tgcacgtgac
       61 ccggcggagc cacgagcgtg gagccatgaa aaatagggaa tgtggcactt tttaaggttc
      121 catgatgcgc gtacgttagc acatgattcg cccacctttt gcgtaagctt ctgctctacg
      181 accgccccat gccgcaagga accgttatgc ccagcatctt gaatcagtat cagcaacccg
      241 tcggcgagtc cgtgcctcac tggactgcgc gcgtgcaccc gccgcgcaat cccatcgaag
      301 ggcagtattg ccggctggag ccgctcgaac cgcaccacgc agccgacctc ttcgacgcct
      361 ttagccaagc cccggatggc cgtgactgga cctacatgcc ggtaggcccg ttcgacgatg
      421 cagccagcta tctcgagtat gtcgaacgtg ctgcagtcag tcccgatccc cagcactacg
      481 cggttatcga cctgaagagg ggaaccgcga tcggaaccct gtcgctgatg cggattgacc
      541 gggccaatgg ggttatcgaa gtcggcaacg tggcgttctc gccgctgctc aaacgcacgc
      601 cgatctcgac ggaagcccag tacctgttga tgaaacatgc gttcgatgaa ctcggctacc
      661 gccgctacga atggaagtgc gacgcgttga acgcgccttc gcggcaagcg gctgcgcggc
      721 tgggtttcca gttcgagggc atcttccggc aggccgtgct ctataagggg cggacacggg
      781 ataccgcgtg gttctccatc atcgacagcg aatggcccac ggtacgcgct gcattcgaac
      841 aatggctcgc accggagaac ttcgatgcag aaggcgggca gcgcaagtcg ctgacggacg
      901 tgcgtgctca gctaagcaaa gcaggctagg cccggttttt ctactgcggc ttttgcgggt
      961 tcccgtttgt aatctttgtt ggtattgtgc gcggtgactt ggcggaccgg ttgaacggga
     1021 cgtcaggtca ccgctgccca agcgttccct cgctcgcctc tcgcgcgttc cttttactca
     1081 gcaacggaca ttcaaacaat gaaattcgat cgtcttgcgc agtcgcttct tgcggcggcg
     1141 ctcgcccttt gctatgccgg cgcccaggcc gcttcgcaag ccccggttgc cgccgagaac
     1201 ggtatggtcg taacagccca gcatcttgcc acgcgcattg gcgtcgacgt gctcaaggac
     1261 ggcggcaacg cagtcgatgc ggccgtcgct gtcggctacg cactcgcggt ggtataccct
     1321 gcggccggta acattggcgg tggcggtttc atgacgatcc agctcgccga tggccgcagg
     1381 accttcctcg atttccgcga aaaggcgccg ttggccgcta ccgcgaacat gtatctggat
     1441 aaggacggca acgtcatccc gggcttgagc acgaagggct atctggcggt tggcgtgccg
     1501 ggtacggtgt ccggcatgga aatggcgctg acgaaatacg gcacgatgaa gcgcgccgat
     1561 gtcatcgcac ccgccatcaa atatgctcaa gagggcttcg tactcgatca gggcgacgtc
     1621 gatatcctcg ggaccgcgac ggacgacttc aaaaaggacc cgaacggctc cggcgcgatc
     1681 ttcctgaacc acggcgagcc gtaccaggtt ggccagcggc ttgtgcaaaa agacctggcg
     1741 aaaaccttgc gcgagatcag caccaagggc cctgacggtt tctataaggg ctgggtcggc
     1801 aatgcactcg tctcatcgac gcaagccggc aagggcatca tcacgc
//
LOCUS       DATGBK010000790         2349 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_195094, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000790 DATGBK010000000
VERSION     DATGBK010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195094"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VKJ77_11080"
     CDS             complement(<1..544)
                     /locus_tag="VKJ77_11080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009315754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnonate dehydratase"
                     /protein_id="HMC45856.1"
                     /translation="MKIKHIRTRVFEWKGKVVPPQAHFCTNAVDILYERGDAMGSFRF
                     HGWLVVEVECDDGTIGIGNCALAPRIAKQIVDEYLAPIAIGEDPFDNEYIWQKMYRRT
                     HAWGRKGIGMAAISAVDIALWDIMGKAVKKPVFKLLGGRTKEKIWCYASKLYNNDDRD
                     VFLAEAQGYLDQGFTAMKMRF"
     gene            complement(575..1915)
                     /locus_tag="VKJ77_11085"
     CDS             complement(575..1915)
                     /locus_tag="VKJ77_11085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018905551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45857.1"
                     /translation="MIATRDTALDSAIGRARSRLLPFLVLMYVLAFIDRANVGFAKSV
                     LQADTDLSDVAFAFGAGVFFIGYAIFEVPSNLLMYRFGARVWMSRIMVTWGIVSACTA
                     LVHDATSFYTLRVLLGIAEAGFFPGIILFLSNWFPAKTRSQTMGAFYFGFPLALLLGS
                     PVSGLLLDASNPFGMHPWQWLFVVEGVAASVVGVIAYFYLTDRPADARWLSDAQRDAL
                     SSALRNEDERKLAHGPSSVLAALRDKRVLFFSFIYFTVQISVYGVVFYLPTRIAGLTG
                     GHVGTKVGLITAIPWIAAIAGTFVVTRIADRVGHHRTFAAAMLTLAALGIAASAMTAS
                     LTLAVIAFCIAAIGFVSVQPLFWTLPTGYLGGAAAAGGIALINSIGNLGGFVAPNLKG
                     LAERVVGSPEAGMLSLAVAGLIGAALLLAFKSASAQSTGSIDSAAPLGKKRPSH"
     gene            2095..>2349
                     /locus_tag="VKJ77_11090"
     CDS             2095..>2349
                     /locus_tag="VKJ77_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45858.1"
                     /translation="MIAPASTIRKRLRLRHLQLMVALSEFESLRRAADELAMTQPAAT
                     KALQELEDTVGVSLFVRHARGMEPTIFGEAVMRYARVVFED"
BASE COUNT          504 a          733 c          689 g          423 t
ORIGIN      
        1 cgaagcgcat cttcatcgcg gtaaaaccct ggtcgagata accttgcgct tcggccagga
       61 acacgtcgcg gtcgtcgttg ttataaagct tcgacgcgta acaccagatc ttttccttcg
      121 tgcggccgcc cagcagcttg aacaccggct tcttcaccgc cttacccatg atgtcccaca
      181 gcgcaatatc caccgccgag atcgcagcca tgccaatccc tttgcggccc cacgcgtgag
      241 tgcgccggta catcttctgc cagatgtatt cgttgtcgaa agggtcttcg ccaatggcga
      301 tcggcgcaag atattcatcg acgatttgct tggcaatgcg tggcgcgagc gcgcagttgc
      361 caatgccgat ggtgccgtcg tcgcactcca cttccaccac gagccagccg tggaaacgga
      421 acgaacccat cgcgtcgcca cgttcgtaaa gaatgtcgac ggcattagtg cagaaatgcg
      481 cttgcggggg cacgaccttg cctttccatt caaagacacg cgtgcggata tgcttgattt
      541 tcatggtctg actctcctcg aagaagcgaa tgacttaatg gctcggccgt tttttgccaa
      601 gcggtgctgc ggaatcgatt gaaccggtgg actgtgccga agcggacttg aaagcgagca
      661 acaacgccgc gccaatcagc ccggcgaccg caagcgagag cattcccgcc tccggcgaac
      721 cgaccacgcg ctcggccagc cccttcaggt tcggggcaac gaagccgccc aggttgccga
      781 tcgaattgat gagcgcgatg ccgcccgcgg cagcagcgcc gccaaggtag cccgtcggca
      841 aggtccagaa gagcggttgc accgaaacga atccaatcgc ggcaatgcag aacgcgatca
      901 cggccagcgt gagcgaagcg gtcattgcgg aagccgcaat gccgagcgcc gcgagcgtga
      961 gcatggcggc ggcaaacgtc cgatgatgtc ccacacggtc agcaatgcgg gtgaccacga
     1021 aggtcccggc aatcgcagcg atccatggaa tggcggtgat caaaccgacc ttcgtcccca
     1081 catggccgcc tgtcagcccg gcaatacgcg tcggcaaata gaagaccacg ccatagacgc
     1141 tgatctgcac cgtgaagtag atgaagctga agaagagcac ccgcttatcg cgcaaggcgg
     1201 cgagcaccga ggacggtccg tgcgcaagct tgcgttcgtc ctcgttacgc agagcggaac
     1261 tcaatgcatc gcgttgcgcg tcgctgagcc agcgggcatc ggcgggacga tcggtcaggt
     1321 agaagtacgc gatgacaccc accaccgaag ccgccacgcc ttcaaccacg aacagccatt
     1381 gccaaggatg catcccgaac ggattcgacg catcgagcaa cagccctgac accggactgc
     1441 ccagcagcag cgcaagcgga aagccgaagt agaacgcgcc catggtttgc gaccgggtct
     1501 tggccggaaa ccagtttgaa agaaacagaa tgatgccggg gaagaatccc gcctccgcta
     1561 ttccaagcag gacccgcagc gtatagaaac ttgttgcatc gtgaacaagc gccgtgcacg
     1621 ccgagacaat gccccacgta accatgatgc ggctcatcca gacgcgcgcg ccgaagcggt
     1681 acatgagaag gttgctgggc acttcgaaga ttgcgtatcc gatgaagaag acccccgcgc
     1741 cgaacgcgaa tgccacgtcg ctcaggtccg tgtcggcctg caggacgctc ttcgcgaatc
     1801 ctacgttggc acggtcgatg aaggccagta cgtacatcag caccaggaat ggcagcagcc
     1861 gcgaacgtgc tcggccaatc gcgctgtcca gcgccgtatc gcgggtcgcg atcattgatt
     1921 tgtctcctga gttttgttgc acgcggctcg ttcgtggctc gatctcggcc cgttctcagt
     1981 ccgatacgtc gagggttttt gtgcgtgtcg ttggataccc gtagtgtgcg aaactacgcg
     2041 ataactgacc attgaattaa tcgcatcgct ctattccctg gagttatcgc tcgcatgatc
     2101 gcgcccgcat ccaccatccg caagcgcttg cgcctgcgcc acctgcagct catggtggcg
     2161 ctctcggaat tcgaatcgct gcgtcgcgcc gccgacgaac tcgcgatgac ccagcccgcc
     2221 gcgaccaagg cgctgcagga actggaggac accgtcggcg tgtcgctgtt cgtgcggcac
     2281 gcgcgcggca tggagccgac catcttcggc gaggcggtca tgcgttatgc gcgcgtggtg
     2341 tttgaagac
//
LOCUS       DATGBK010000791         1516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_125198, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000791 DATGBK010000000
VERSION     DATGBK010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125198"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            233..904
                     /locus_tag="VKJ77_11095"
     CDS             233..904
                     /locus_tag="VKJ77_11095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC45859.1"
                     /translation="MRILIVEDDPVFADALDHTLREHGYEVQCVHSGAAGDDALLAEK
                     FDLVLLDIGLPGIDGFALLSRMRQRAQKVPVLILTARDALHDRVKGLDLGADDYLSKP
                     VDMPELVARVRAVTRRYHGNAGNDIALGSLTLDTNGHRVLLHGKPIEFSAREYAVVEI
                     LMIWANRVVTKDQLIKLLYEPGADTNQSAIDVFMHRIRRKLGDANVTIRTVRGLGYLL
                     ERTDE"
     gene            918..>1516
                     /locus_tag="VKJ77_11100"
     CDS             918..>1516
                     /locus_tag="VKJ77_11100"
                     /inference="COORDINATES: protein motif:HMM:NF020110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase N-terminal
                     domain-containing protein"
                     /protein_id="HMC45860.1"
                     /translation="MRRQLLQWLLVPLLALFAGSSAVSYYVAIRFADLAHDYELYDIA
                     LSMWQQVRVVEGRAVIELPQAALQILEFDSRDKVYVRLSTADGRFISGSHELPDPPAP
                     ARGAVSYYDATIHGEPVRVALLRERLPDSDIEVAVQAAETRVKRDLFAKDILLAVLIP
                     QLLIIVVAGALVWLGVSRGLMPLQQITDAVGGRSYRDLSS"
BASE COUNT          278 a          443 c          475 g          320 t
ORIGIN      
        1 gccctatgaa ttgaaatagt ctattgctgt tgctgaaatt gtattgcgaa gggggcggct
       61 tcccgagggc tgcccccttt gtctttggcg ttgcgcacac ccaagacgat ctgttgcctg
      121 atagtcccgc ggtgccattg cagattgagc gttacgcgta gggcgcgatg gccttaccaa
      181 gaatgaacta ccatgctacg cttgacgttg ccacaatgac tgtgctgcgc caatgcgaat
      241 tctgatagtc gaagacgatc ccgtgtttgc cgatgcgctc gatcacacgc tgcgcgagca
      301 cggttacgag gttcagtgtg tgcactccgg tgcggcgggc gacgatgcgc tgcttgccga
      361 aaagttcgat ctggtattgc tcgacatcgg gctaccgggg atcgacgggt tcgcgctgct
      421 ctcgcgaatg cggcagcgcg cgcaaaaggt gcccgtgctg atcctcacgg cgcgcgatgc
      481 attgcacgac cgcgtcaagg gactggatct cggcgccgac gactacctga gcaaaccggt
      541 tgatatgccc gagctcgttg cgcgtgtgcg cgcggtgact cggcgttacc atggcaacgc
      601 cggcaatgac attgcgctgg gatcgctcac cttggatacg aacggacacc gggttctgct
      661 gcacggcaag cctatcgaat tctcggcgcg cgaatacgcg gttgtggaaa ttctgatgat
      721 ctgggccaac cgcgtggtga ccaaggacca gctcatcaag ctgctgtacg aaccaggtgc
      781 ggataccaat cagagcgcga tcgacgtgtt catgcaccgc atccgcagga agctgggcga
      841 tgcgaacgtt accattcgca cggtgcgggg actgggctac ttgctcgagc ggaccgatga
      901 gtaaaaaggc attcagcttg cggcgccagt tgctgcagtg gctgctggtg ccgctgctcg
      961 cattgtttgc tggctcctcc gcggtgtcct actacgtcgc gatccgtttc gccgacctcg
     1021 cgcacgacta tgagctctac gacattgcgc tttccatgtg gcagcaggtg cgggtggtcg
     1081 aaggaagggc ggtgatcgaa cttccccagg cggcgttgca gattctcgaa ttcgattcac
     1141 gtgacaaggt ctatgtgcga ctgagcacgg ccgacggccg cttcatcagc ggctcgcacg
     1201 agcttccgga cccgccagcg cctgccagag gcgcggtcag ctactacgat gccacgattc
     1261 acggcgagcc ggttcgcgtc gcgctgttgc gagaacggct tccggacagc gacatcgagg
     1321 tcgccgttca agcggctgaa acgcgggtca agcgcgatct cttcgccaag gacatcctgc
     1381 ttgctgtgct catcccacag ctactgatca tcgtcgttgc cggcgccttg gtctggctgg
     1441 gcgtgagccg cggtctcatg cccttgcaac agatcaccga cgcggtgggc ggacgaagtt
     1501 accgcgattt gagctc
//
LOCUS       DATGBK010000792         2382 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_287262, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000792 DATGBK010000000
VERSION     DATGBK010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287262"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..485)
                     /locus_tag="VKJ77_11105"
     CDS             complement(81..485)
                     /locus_tag="VKJ77_11105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type cleavage/methylation
                     domain-containing protein"
                     /protein_id="HMC45861.1"
                     /translation="MKRSLRRVGRGDSLIEVLIAMSLTAITALGIIGAQMWLARNERS
                     LMARELATSIADSVAEGIRHDTDRDPVVTQWRMRAAALLPDGDVDVLDRGDGLRIAVV
                     KWRAPASSDVEAVCAEPGVGAKLACVTVAFAR"
     gene            complement(482..1033)
                     /locus_tag="VKJ77_11110"
     CDS             complement(482..1033)
                     /locus_tag="VKJ77_11110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family protein"
                     /protein_id="HMC45862.1"
                     /translation="MQMNLRCLSGFTLVELAVVLAVIAVVATFATPSVVVWHKRDQID
                     ARARTMMSTLTLACSEAIRRGARVTLCRIDAAHACLAANKACDGGLTDWSCGWALFAD
                     RGGARVLLRMQPAASGIAIGGTGSELSFTPPSGQVIGGFRSFDFSARDNALTSLGARG
                     RRCIRLAAGGRPRLTQGACGAAT"
     gene            complement(1191..1673)
                     /gene="nrdR"
                     /locus_tag="VKJ77_11115"
     CDS             complement(1191..1673)
                     /gene="nrdR"
                     /locus_tag="VKJ77_11115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HMC45863.1"
                     /translation="MRCPFCRHEDTQVADSRVSEDGAAIRRRRRCPACDKRFTTYERV
                     ELALPSVVKKDGSRTEFDRAKIVASMQLALRKRPVAADAIDAAVARIEYQLLGSGERE
                     VRSDRLGELVMNELRQLDTIAYVRFASVYKRFEDVSEFEDVLEEFRRTAPRKSSPRKR
                     "
     gene            complement(1677..>2382)
                     /locus_tag="VKJ77_11120"
     CDS             complement(1677..>2382)
                     /locus_tag="VKJ77_11120"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011356345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HMC45864.1"
                     /translation="IDFERLSKIAKSVGAYFMVDMAHYAGLIAAGVYPNPVPFADFVT
                     TTTHKSLRGPRGGVILMKAEYEKQINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFK
                     AYQQQVVDNARVLAETLVKRGLRIVSGRTESHLMLVDLRAKHITGKAAEAALGKAHIT
                     VNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFGVAEAEQVGNLIADVLDAPEDEANLER
                     VRTKVAALTKQFPVYG"
BASE COUNT          471 a          797 c          688 g          426 t
ORIGIN      
        1 gagaacgatc agcacgccaa gcgccaccga gattgatagc tcgagcagcg tatggccaca
       61 ctgccggtat ctggaagcgc tcatcgtgcg aacgccacgg tcacgcaggc gagctttgcg
      121 cccacgcccg gctccgcaca caccgcttcg acgtcactcg atgccggcgc ccgccatttc
      181 acgaccgcga tgcgcaaacc gtcgccacgg tccagcacat cgacatcgcc atcgggcaac
      241 agcgccgcag cgcgcatgcg ccattgcgtc acgaccggat cgcgatcggt gtcgtgacgt
      301 attccctctg caacggaatc cgcaatcgat gtggcgagct cacgcgccat cagcgaacgt
      361 tcgttgcgag ccagccacat ttgcgcgccg ataatcccga gcgccgtaat ggccgtcagc
      421 gacatcgcga tcaggacttc gatcagtgaa tcgcctcggc caaccctgcg caatgaacgt
      481 ttcatgtggc cgctccgcac gcaccttgtg tcaaccgtgg ccggccgcca gccgcgagcc
      541 ggatacagcg gcgcccgcgc gctccaagcg acgtcaacgc gttgtcacgg gcactgaagt
      601 cgaagctgcg aaagccgccg atcacctggc ccgagggcgg cgtgaacgac aactcactcc
      661 ccgtgccgcc aatggcaatg ccgctcgctg ccggctgcat tctcaacagc acgcgcgcgc
      721 cgcctcgatc ggcgaatagc gcccatccgc atgaccagtc cgtcaagccg ccgtcgcagg
      781 ccttgttggc cgcgagacac gcgtgcgcgg catcgatccg gcacaaggtc acgcgtgcgc
      841 cgcgccggat cgcttccgag cacgccagcg tgagggtgga catcattgtg cgcgcccgtg
      901 catcaatctg atcccgcttg tgccagacga caacggacgg cgtagcgaac gtggcaacga
      961 cagcgataac ggcaagcacg accgcgagct cgaccagcgt gaagcctgat aaacatctca
     1021 aattcatctg catcccttat cgattgaact gggccaacac tcaatctaaa gagaattttc
     1081 gatgtccgcc attagccgat cggtcgacta tcggacgtgc aaaagcctcg acatactgtc
     1141 gaaacgatca ctggattcaa gcaagaaagg aaaggaaaat gcagaaacgc tcagcgcttg
     1201 cgaggactgg atttgcgcgg cgcggtgcgc cggaattcct cgagcacgtc ttcgaattcg
     1261 gacacgtctt cgaagcgttt gtagaccgac gcaaaacgca cgtacgcaat ggtgtccaac
     1321 tggcgcagct cgttcatcac gagttcgccc agacggtcgc tgcgaacttc gcgttcgccg
     1381 ctgccaagca actggtattc gatccgcgca acggcggcgt caatggcgtc tgccgcaacc
     1441 gggcgcttgc gcagcgccag ttgcatgctc gccacaatct tcgcgcgatc gaactcggtg
     1501 cggctgccat ccttctttac taccgacggc aacgcgagtt ccacgcgctc ataggtggtg
     1561 aaacgcttgt cgcaggcggg gcaacgccgc cggcggcgaa ttgccgcccc gtcttccgac
     1621 acgcgcgaat ccgccacttg cgtgtcctcg tgccggcaga aggggcagcg catggcttag
     1681 ccgtagaccg ggaattgctt ggtcaacgcg gcgaccttcg tgcgtacgcg ctcgaggttg
     1741 gcttcgtctt ccggcgcatc cagcacgtcg gcaatcaggt tacccacctg ctcggcctca
     1801 gccacgccaa aaccgcgcgt ggtcatggcc ggcgagccca gacgcacgcc gctggtgacg
     1861 aacggctttt ccggatcgtt cggaatcgcg ttcttgttca ccgtgatatg agccttgccg
     1921 agcgcagctt ccgctgcctt gccggtgatg tgcttcgccc gcaggtcgac cagcatcagg
     1981 tggctttcgg tgcggcccga gacaatccgc aggccgcgct tcaccagcgt ttcagccagc
     2041 actcgcgcgt tgtccacgac ctgttgctga taagccttga attccggcga cagcgcttcc
     2101 ttgaacgcaa cagccttacc ggcaatcacg tgcatcagcg gaccaccttg aatgcccggg
     2161 aaaatggccg agttgatttg tttctcgtac tcggccttca tcaggatcac gccgccgcgc
     2221 gggccgcgca ggctcttgtg cgtcgtggtc gtgacgaaat ccgcgaacgg caccgggttc
     2281 ggataaacac cggctgcgat caggccggcg taatgcgcca tgtcgaccat gaaatacgcg
     2341 ccgacgctct tggcgatctt cgacaaccgt tcgaaatcga tc
//
LOCUS       DATGBK010000793         4002 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_171607, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000793 DATGBK010000000
VERSION     DATGBK010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4002
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171607"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..422)
                     /locus_tag="VKJ77_11125"
     CDS             complement(<1..422)
                     /locus_tag="VKJ77_11125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45865.1"
                     /translation="MSDSRLPQTRGFLKSLFRKAGVVALAGVIMAGALVTEDAEARRM
                     GGGRSLGRQSTSAAQQNQATPPSQSMQSSQAANAQRAAPAAAPAAAAAQPARNRWMGP
                     LAGLAAGLGIAALLSHFGLGGAFAGAMANMIMIALIVMA"
     gene            complement(448..1179)
                     /gene="ubiE"
                     /locus_tag="VKJ77_11130"
     CDS             complement(448..1179)
                     /gene="ubiE"
                     /locus_tag="VKJ77_11130"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011546189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HMC45866.1"
                     /translation="MSKTHFGFETVDEQEKAKKVAGVFDSVASNYDLMNDLMSGGLHR
                     AWKFFAIGQAKVRPGYKVLDLAGGTGDLAKAFAKQAGEKGEVWHTDINESMLRVGRDR
                     LIDRGVITPTLICDAEKIPFPDNYFDIITVAFGLRNMTHKDGALAEMYRVLKPGGRVL
                     VLEFSKVWAPLKKAYDLYSFKFLPWLGDKFAKDADSYRYLAESIRMHPDQETLKIMME
                     RAGLDRVEYYNLSGGVVALHVGTKF"
     gene            complement(1276..1686)
                     /locus_tag="VKJ77_11135"
     CDS             complement(1276..1686)
                     /locus_tag="VKJ77_11135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HMC45867.1"
                     /translation="MSGLTKQTPIPTGIVVHSKTRALELQYANDQTYRIPFELLRVYS
                     PSAEVQGHGPGQETLQTGKRDVLISAIEPVGHYALQLNFSDGHNTGLYSWDILHDLAV
                     RQDELWADYLAKLEAAGMDRDTPMTPKASGGHRH"
     gene            complement(1743..2171)
                     /locus_tag="VKJ77_11140"
     CDS             complement(1743..2171)
                     /locus_tag="VKJ77_11140"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HMC45868.1"
                     /translation="MDCVFCREDGGEILWSDDAVRVVLADEPEWPGFCRVIWHAHVAE
                     MSDLDNAARLKLMTAVNGVERAIRRVLAPAKINLASLGNQVPHVHWHVIPRHSNDSRF
                     PLPVWAPRQRTVSQALLSNRRAQATLLREAVRAEMTLAFG"
     gene            complement(2207..>4002)
                     /locus_tag="VKJ77_11145"
     CDS             complement(2207..>4002)
                     /locus_tag="VKJ77_11145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3400 domain-containing protein"
                     /protein_id="HMC45869.1"
                     /translation="IMKLARDLDGVISGEHGIGITKLEFLTEDEIAEFREYKQRVDPE
                     GRFNAGKLLAGADLRNAYTPSFGLMGYESLIMQQSDIGAIADSIKDCLRCGKCKPVCA
                     THVPRANLLYSPRNKILATSLLVEAFLYEEQTRRGVSIKHWDEFNDVADHCTVCHKCV
                     TPCPVKIDFGDVTMNMRNLLRKMGKKKFNAGNAAGMFFLNATNPQTINLARTAMMGVG
                     YKAQRLGNEVLKKFAKKQTAKPPATVGKPPVTQQVIHFMNKKMPGNLPKKTARALLDI
                     EDNKVVPIIRNPKTTTSDTEAVFYFPGCGSERLFSQVGLATQAMLWEAGVQTVLPPGY
                     LCCGYPQRGAGQFDKAEKIVTDNRVLFHRVANTLNYLDIKTVVVSCGTCYDQLAGYEF
                     EKIFPGCRIIDIHEFLLEKNIKLEGVTGTRYMYHDPCHSPIKTMDPIKLVNEIMGSAH
                     DGYKIEKNDRCCGESGTLAVTRPDISTQVRFRKEEEIRKGAAKLRDIPLVGEAGANAV
                     NMANASAGTAGAAPGSVLKADDGAKSTGTDVKILTSCPSCLQGLSRYNEDANIEADYI
                     VVEIARKVLGASWMEDYVARANDGGIERVLV"
BASE COUNT          782 a         1249 c         1111 g          860 t
ORIGIN      
        1 gccatcacga tcaacgcaat catgatcatg tttgccattg caccggcgaa tgcgccgcca
       61 agaccgaagt gcgacagcaa cgctgcgata ccgagacctg cggcgagacc ggcgagcggc
      121 cccatccagc ggttacgcgc aggctgggcg gccgcggcag caggtgccgc cgccggcgcc
      181 gcacgctggg cgttggcggc ctggctcgac tgcatggact gcgagggcgg cgtggcttga
      241 ttctgttgag ctgcactcgt tgattgacgg cccaggctgc ggccgccacc catgcggcgt
      301 gcctcggcat cttccgtcac taaagcaccg gccatgatta cgccagccag cgcaacgacc
      361 ccggctttcc tgaataacga cttcaggaaa ccccgagttt ggggtaagcg cgaatcggac
      421 atttcgaatc cttataaaag tggaacatta aaattttgtc ccgacgtgca acgctaccac
      481 gccacctgac aaattgtaat attcgactcg atccaatcct gcgcgttcca tcattatttt
      541 taaggtttcc tgatccggat gcatccggat ggactccgcg aggtagcgat agctatccgc
      601 atctttcgca aacttgtcac caagccacgg taaaaacttg aaactgtaga gatcgtacgc
      661 tttcttcaac ggcgcccata ccttcgagaa ctccagaacc aggactcggc cacccggctt
      721 cagcacccga tacatttcag ctaacgcacc atctttgtgc gtcatattac gaagtccaaa
      781 ggcaactgta atgatatcga aataattatc tgggaacgga atcttctccg cgtcgcagat
      841 cagggtggga gtgatcacac cacggtcgat caggcgatca cgcccgaccc gcagcatcga
      901 ttcattgata tccgtgtgcc agacttcgcc tttttcgccg gcctgtttcg cgaacgcttt
      961 cgccagatcg cccgtcccgc ctgccagatc gagcactttg tagcctggac gaaccttcgc
     1021 ttgcccgatc gcgaaaaact tccacgcgcg atgcagcccg cccgacatca ggtcgttcat
     1081 caagtcgtaa ttgctcgcga ccgaatcgaa aacgcccgcc accttcttcg ctttttcctg
     1141 ttcgtcgacc gtttcaaaac cgaagtgggt cttgctcatc gcgttcgtcc tcatcttgtt
     1201 cgtgttgttg gccgcgtccg aatacggacg ttggccggtt gccgcgacaa attgccgcag
     1261 caaggtaaaa gtcggtcagt ggcggtggcc gccggacgct tttggcgtca tgggcgtatc
     1321 gcggtccatg cccgccgctt ccagtttggc gagatagtct gcccagagtt catcctggcg
     1381 gaccgcgagg tcatgcagga tgtcccagga ataaagaccg gtattgtggc catcggaaaa
     1441 attgagctgc aacgcgtaat gcccaacggg ctcgatcgcg ctgatcagca catcgcgttt
     1501 gcccgtctgc agggtttcct gcccgggacc atggccctgc acctccgccg acggcgaata
     1561 tacgcgcaat agctcgaacg ggatcctata cgtctgatcg ttcgcgtact gcaactcgag
     1621 ggcgcgcgtt ttcgaatgca cgacgatgcc cgtcggaatc ggcgtttgtt tggtcagtcc
     1681 gctcatcgtg agcctttatt gaaccagata gtcagttagg ccggggcgcc tgggtcagaa
     1741 gctcagccaa acgccagcgt catctcggcg cgtactgctt cgcgcagcaa ggtggcctgc
     1801 gcccggcgat tcgacaacag cgcctgggac accgtgcgct ggcgtggcgc ccagacgggc
     1861 agcgggaaac gggaatcgtt ggaatggcgc ggaatgacgt gccagtgaac gtgaggaacc
     1921 tggttgccga ggcttgcaag attgatcttc gccggcgcga gcacgcgacg gatcgcccgc
     1981 tccacgccgt tcaccgcggt catcaacttg aggcgcgcgg cgttgtcgag atcggacatc
     2041 tcagccacgt gagcgtgcca gatcacgcgg caaaagcccg gccactcggg ctcatcggca
     2101 aggacgacgc gcactgcgtc gtccgaccac aagatctcgc cgccgtcttc acggcaaaag
     2161 acacagtcca tcattttcct ctagcgaaac aaccccgatt ccgctattac accagcacgc
     2221 gctcgatacc gccatcgtta gcgcgcgcca cgtagtcttc catccagctc gcgccgagca
     2281 ccttgcgggc aatttccacg acgatgtaat ccgcctcgat gttcgcgtcc tcgttataac
     2341 gcgacaaacc ctgcaggcag gacgggcagc tcgtgaggat cttgacgtcg gttccggtgg
     2401 atttggcgcc gtcgtctgct tttaacactg aacccggcgc agcacccgcc gttccagccg
     2461 acgcattcgc catattcaca gcgttcgcac ccgcctcgcc cacgagcgga atgtcgcgca
     2521 gcttggccgc gcccttgcgg atttcctctt ccttgcggaa acgcacttgc gtggaaatgt
     2581 ccggccgtgt gaccgcgagc gtgcccgatt cgccgcagca tcggtcattt ttctcgatct
     2641 tgtagccgtc gtgcgccgaa cccatgattt cattcacgag cttgatcggg tccatcgtct
     2701 tgatcggcga gtggcagggg tcgtgataca tatagcgcgt accggtcacg ccttccagct
     2761 tgatgttctt ttccagcagg aattcgtgga tatcgataat ccggcagccc gggaaaatct
     2821 tctcgaattc atacccggcc agttggtcgt aacaagtacc gcacgacacc accaccgtct
     2881 tgatatccag atagttcagc gtattggcca cacggtggaa caacacgcgg ttatccgtga
     2941 cgatcttctc ggctttatcg aattgaccag caccgcgttg cggataaccg cagcacaggt
     3001 aacccggcgg caacaccgtc tgcacgcccg cttcccacaa catggcttgc gtagcgaggc
     3061 cgacctgcga gaacaagcgc tccgagccgc agcccgggaa gtagaagacc gcttccgtat
     3121 ccgaggtcgt ggtcttcgga ttccggatga tcggaacgac cttgttgtcc tcgatgtcga
     3181 gcaacgcgcg cgccgtcttc ttcggcaggt tgcccggcat cttcttgttc atgaagtgga
     3241 tcacctgctg cgtcaccggc ggtttgccga ccgttgctgg tggtttcgcc gtctgcttct
     3301 tcgcaaactt cttcagcact tcattgccca gccgctgagc cttgtaaccg acacccatca
     3361 tcgccgtgcg tgcaaggttg atagtctgcg gattcgtggc gttgaggaag aacatgccgg
     3421 cggcgttgcc cgcgttgaac ttcttcttgc ccatcttgcg cagcaggttg cgcatgttca
     3481 tggtgacatc gccgaaatcg atcttcaccg ggcacggcgt cacgcacttg tggcagacgg
     3541 tgcagtgatc ggcgacgtcg ttgaattcgt cccaatgttt tatcgatacc ccgcggcgcg
     3601 tctgctcttc atataagaac gcctcgacca gcagcgatgt cgcgaggatc ttgttgcgcg
     3661 ggctatacag caggttggcg cgcggcacgt gggtcgcgca gaccggcttg cacttgccgc
     3721 aacgcaggca gtccttgatg gaatccgcga tcgcgccaat gtccgactgc tgcatgatca
     3781 gcgattcgta gcccatcaag ccgaagctcg gcgtgtaagc gttgcgcaga tcggcgcccg
     3841 cgagcagctt gcccgcattg aaacgacctt ccgggtcaac gcgttgcttg tactcgcgga
     3901 actccgcgat ttcgtcttcg gtcagaaatt ccagcttcgt gatgccgatg ccatgttcgc
     3961 ccgagatcac gccgtccaga tcgcgcgcca gcttcatgat gc
//
LOCUS       DATGBK010000794         2575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_78859, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000794 DATGBK010000000
VERSION     DATGBK010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78859"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(292..516)
                     /locus_tag="VKJ77_11150"
     CDS             complement(292..516)
                     /locus_tag="VKJ77_11150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013343260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45870.1"
                     /translation="MKKQLVAATLVALFSAGAFAQASAPAPAPAPAAGPAMTADAAAP
                     ASATHKAKKHHKKHHKHAAASTIPSSAPKP"
     gene            complement(784..2031)
                     /locus_tag="VKJ77_11155"
     CDS             complement(784..2031)
                     /locus_tag="VKJ77_11155"
                     /inference="COORDINATES: protein motif:HMM:TIGR00710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HMC45871.1"
                     /translation="MQRWRLAPQSILFAVFLGALAALPPISIDMALPALGNIASSLHA
                     SASQAGLTLSLFMAGFAVGPIVYGPLSDARGRKPTLLLGLALFTAGGIVSALAPGIAV
                     LLGARLAQGIGAGAGMTVALAIVRDLFEGNAMQHRLAAITVVANVAPIVAPSIGVGLL
                     AAIEWRGIYGVMAVCGLLAALATWAGLTESAPQRSGSFALSGLRDGYRRALTHRAVLG
                     HILINGFGFGWMFAYVAGSPLVLLHILHVKPIIYAAMFAMTGAGIVAGATLNGFIAAR
                     GVESRRILATVICTTLATTLGLIALSVFHHASLPTIMPLLVASTFCFGLAAPSAARGA
                     LDPIPELAGVAGGLLTSIQMLCGAASSSFVALLFPVFGIFSMSGVMAVCALLAGMVWI
                     WLGQRGGIETSATVADANSTSPI"
     gene            complement(2036..>2575)
                     /locus_tag="VKJ77_11160"
     CDS             complement(2036..>2575)
                     /locus_tag="VKJ77_11160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HMC45872.1"
                     /translation="SIVIIGLGGVGGAASQIAKHIGAKVVGVGRGAAATSPYVDAMVD
                     SQAPDAIARIREATDGGAAVVFDTVGGSMFETALHMLKVGGRLVEISASDRREVTFNL
                     ADFYHNESRLIGIDTLKRDLVASAQMLEALRPGFEDGSYKAPAIAQTFALEDAKAAYQ
                     AVAEGTKGRVVLTPQTKRS"
BASE COUNT          547 a          800 c          785 g          443 t
ORIGIN      
        1 ttttcggtca gcgtggtctt gcccgcgtca gggtgagaaa tgaccgcgaa ggtgcggcgc
       61 cgtttaagtt cggagagtga catcggtact ggaaagagct gtggggttga gcattcgggc
      121 ggggaaagac ggcccgaaaa agccgtgtgg tgtggatgat acacgagggg tggtttgctc
      181 gtgccggggc ccgcctgcca acacaaacga aacgaaacga aaaaagcccc gattggatcg
      241 gggctcttct cgaaaacgct aaagcttaaa gcttgagcaa gctcgacaag cttagggctt
      301 cggtgccgac gacgggatcg tcgacgctgc tgcgtgcttg tgatgcttct tgtgatgctt
      361 cttggctttg tgcgtggcgc tagccggtgc tgcagcgtca gccgtcatag ccggacctgc
      421 tgcaggagca ggagccggag ccggtgccga agcttgagcg aatgcaccag cggagaacaa
      481 agcgacgagc gtcgcggcaa cgagttgctt tttcatggca gtgagaccct tgaggttgat
      541 tgacaactac gcggcgacga cgtcgcgtgt acccgtttaa cgtcccatcg cggagtgtgt
      601 tgacacgaac tcaaagaaaa actgacggca gccacacaat tttcccgtgc aaaggattcc
      661 ttcggttggc gcacaaagtg gcaccctgtc ccccgtttat gtcgcggcat gaaatcaggt
      721 gtcgacacat aacgttgttt aacaattgag ggtgccgata gcccgagccg cgtttcactg
      781 ctttcaaatc ggcgaggtcg aatttgcatc ggcgacggtt gcggacgtct cgattccgcc
      841 tcgctgcccg agccagatcc ataccattcc cgcgagtaac gcgcagacgg ccatcacacc
      901 gctcatcgaa aaaataccga atacgggaaa cagcagcgcg acgaatgaac tcgacgccgc
      961 cccgcacagc atctgtatag atgtcagcaa gccacccgcc acgcccgcca actctgggat
     1021 gggatcgagc gcgccgcgtg cggcactggg cgcggcgagc ccgaagcaaa aagtgctcgc
     1081 cacgagcaag ggcatgatgg tgggcaacga ggcgtgatgg aacacgctca acgcaatcaa
     1141 cccgagggtc gtggcaagcg tcgtgcaaat aacggtggcg agaatgcgcc gcgattcgac
     1201 accgcgcgcg gctataaagc cgttcagcgt tgcaccggcg acaatccccg cgccggtcat
     1261 ggcgaacatc gcggcataga tgattggctt gacatgcaag atatgcagca gcacaagcgg
     1321 cgaacccgcg acgtacgcga acatccagcc gaatccaaag ccgttgataa ggatgtgtcc
     1381 cagcaccgcg cgatgcgtca gcgcgcgtcg atagccatcg cgaagtccgg acagggcgaa
     1441 gctgccgctg cgctgcggcg ctgattccgt caggccggcc cacgtagcga gcgcggccag
     1501 cagtccgcag accgccatga cgccgtatat cccgcgccat tcaatcgccg ccagcaatcc
     1561 aacgccgata gagggtgcaa caatcggcgc aacgttcgcg accacggtga tggccgcgag
     1621 ccggtgctgc atcgcattgc cttcgaacag gtcgcggaca atcgcgagcg caaccgtcat
     1681 ccccgcaccc gctccaatgc cctgcgcaag gcgcgcgccg agcaacacgg cgatgcccgg
     1741 cgccagcgct gagacaatcc cgcccgctgt gaacaatgca aggccgagca gcagcgtagg
     1801 cttgcggcca cgtgcgtccg aaagtgggcc gtagacgatc gggccaaccg caaaacccgc
     1861 catgaagaga ctcagcgtaa gcccggcctg actcgcgctt gcgtgcaacg agctcgctat
     1921 attgccaagc gcgggcaacg ccatatcaat ggaaatgggc ggcaatgcag ccagcgcgcc
     1981 caggaaaaca gcgaacagga tggattgcgg cgcgagtcgc cagcgttgca tcgcgtcagc
     2041 tccgcttcgt ttgcggtgtc agcacgacgc ggccttttgt gccctccgcc accgcctggt
     2101 aggcggcttt cgcgtcctcc agcgcgaagg tttgcgcgat ggccggcgct ttgtagctgc
     2161 cgtcttcgaa gccgggacgc agcgcttcca gcatctgcgc ggatgcaacc agatcgcgtt
     2221 ttaatgtgtc gatgccaatc aggcggctct cgttgtgata gaaatccgcg aggttgaaag
     2281 tgacttcgcg acggtccgac gccgatatct ccaccagccg tccgcccacc ttcagcatgt
     2341 gcaaggccgt ttcgaacatc gatccgccga cggtatcgaa tacgaccgcc gcgccgccgt
     2401 ccgtcgcttc acggatgcgc gctatggcat cgggggcttg cgaatccacc atggcatcta
     2461 cgtaagggct cgttgcagcc gctccgcgcc ccacgcccac caccttcgcg ccgatatgtt
     2521 tcgcgatctg cgacgccgcc ccgcccacgc cgccgagccc aatgatcacg atgct
//
LOCUS       DATGBK010000795         2451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_333543, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000795 DATGBK010000000
VERSION     DATGBK010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333543"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1009)
                     /locus_tag="VKJ77_11165"
     CDS             complement(<1..1009)
                     /locus_tag="VKJ77_11165"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006410513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005536 - glucose binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0051156 - glucose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HMC45873.1"
                     /translation="MSTGVQSKAVTVAAGSQHADGPRLLADVGGTNARFALETAPGVI
                     GDIRVYPGRDYPGIAEAMQQYLKDIKVSRVNHAAVAIANPVDGDHVSMTNHDWSFSIE
                     ATRRALGFDTLLVVNDFTALAMALPGLTDAQRVQVGGGSRRQNSVIGLLGPGTGLGVS
                     GLIPADDRWIALGSEGGHASFAPSNEREDLVMRFARTKFPHVSFERVSAGPGLLLIYQ
                     ALAERDGVSVADDLESASITQRAHDGEALALEAVNCFCGILGTFAGNIAVTLGALGGI
                     FIGGGVVLKLGELFTKSPFRERFEAKGRFQQYLSSVPTFIITAEYPAFLGVSAILSEQ
                     LS"
     gene            complement(987..1709)
                     /gene="pgl"
                     /locus_tag="VKJ77_11170"
     CDS             complement(987..1709)
                     /gene="pgl"
                     /locus_tag="VKJ77_11170"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HMC45874.1"
                     /translation="MIQLHTFDEPSAQSDALAEAVGDALTATLAARGAASADAAVAGN
                     PTQHATLAVSGGTSPKPFLQTLSAYALDWAHIDVTLVDDRWVPETDGASNARLVRETL
                     LQNAASGAYFLPLVDTARPLDAHIADLNGDAQRRVPDVAVLGMGEDGHTASIFADAPE
                     WDFAISTADRFISVHPTSAPHARVSLSMSALKDVKQLYLFISGQKKLDVLTAALAAPQ
                     KNAISTLAHAQGVRLDVYWCAK"
     gene            complement(1894..>2451)
                     /locus_tag="VKJ77_11175"
     CDS             complement(1894..>2451)
                     /locus_tag="VKJ77_11175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HMC45875.1"
                     /translation="KGVRPDSHTETFVALKVEIENWRWAGVPFFLRTGKRLADRTAEI
                     VVNFRPVPHSALGANALRAGANRLVIRLQPNETIRLYCLAKQPGEGMNLASVHLDLAF
                     DKFFKEGQMEAYQRLLLDVINGRLALFVRRDEQEAAWRYVEPILDEWASSQKPPKPYA
                     SGTWGPAAASAMLAQHGTCWLEEEN"
BASE COUNT          503 a          825 c          668 g          455 t
ORIGIN      
        1 tcgacagttg ctccgacaaa atggccgata cccccagaaa cgccggatat tccgccgtga
       61 tgatgaacgt gggcacgctc gacaaatact gctgaaaccg ccctttcgct tcgaaccgct
      121 cgcgaaacgg cgacttcgtg aacaactcgc ccaacttcaa caccaccccg ccgccaataa
      181 aaatcccgcc cagcgcgccc agcgtcaccg caatattccc ggcaaacgtg ccgagaatgc
      241 cgcagaaaca attgacggct tcgagcgcaa gcgcctcgcc atcgtgagca cgctgggtaa
      301 tgctggccga ctcgagatcg tccgccacgc tcacgccgtc acgttcagca agcgcctggt
      361 agatcagcaa caatcccggc cccgccgaca cgcgttcgaa cgacacatgc gggaattttg
      421 tgcgcgcaaa acgcatcacc aaatcttcac gttcgttcga tggcgcgaag ctcgcatggc
      481 cgccttcgct gccaagcgca atccagcgat catcagcggg aatcaggccg gacacgccca
      541 gacccgtacc cggtccaagc aagccaatca cactgttttg ccggcgcgaa ccgccgccta
      601 cctgcacgcg ctgcgcatcg gtaagaccgg gcaacgccat ggcaagcgca gtgaaatcgt
      661 tcacgaccaa cagcgtgtcg aagcccaacg cgcggcgcgt ggcctcgatc gagaagctcc
      721 agtcgtgatt cgtcatggag acatgatcgc catccaccgg attcgcaatc gccacggccg
      781 cgtggttcac gcggctcacc ttgatgtcct tcagatactg ctgcattgct tcagcaatac
      841 ccggatagtc ccggcccgga taaacacgta tgtcgccaat cacgcccggc gccgtctcca
      901 gcgcaaaacg cgcgttggtg ccgccaacat cggccaaaag cctgggtccg tcggcgtgct
      961 gacttccggc cgctaccgtt acggccttac tttgcacacc agtagacatc gagcctgact
     1021 ccctgagcat gtgccaacgt ggagatggcg tttttttgcg gtgcggcaag cgcagcggtt
     1081 agtacatcca gcttcttctg cccactgatg aacagataaa gctgcttgac gtccttgagc
     1141 gcggacatgg acaacgacac gcgcgcgtgc ggcgcactgg tcggatgaac cgagataaac
     1201 cggtcagccg tcgatatcgc aaagtcccac tcgggggcat cggcgaaaat ggacgccgta
     1261 tggccgtcct cacccatgcc aagcacggca acgtcaggca cacggcgctg tgcatcgccg
     1321 ttcaggtccg cgatgtgcgc gtccagcggt cgtgccgtgt ccaccagcgg caggaaatat
     1381 gcgccgctcg ctgcgttctg cagcagcgtt tcacgcacca ggcgcgcgtt gcttgcgccg
     1441 tccgtctccg gcacccagcg gtcatcgacc agggtgacgt cgatatgcgc ccagtcgagc
     1501 gcataggccg aaagggtttg caggaacggc ttcgggctcg tgccgccgga tacggcgagc
     1561 gttgcgtgtt gggtggggtt gccagccaca gcggcgtcag ccgacgccgc tccgcgagct
     1621 gcgagcgttg cggtaagcgc gtcgcctacc gcttctgcca acgcgtcgga ttgggcgctt
     1681 ggctcatcaa aagtatgaag ctggatcact gctcctccat gctgccttgt tttggtttca
     1741 tttcgcccgt tgcgacaacg cttgaaccac tttaagcgcc acgcaacagg atttgtctcg
     1801 gctttaattg caacatgtct acagcaccta cgtcctagaa cacgttccac cgacccatta
     1861 caacggtctc aataccagtc ttaattccca gtcttaattc tcttcttcca gccagcatgt
     1921 accgtgctgc gccagcatcg cactggcggc cgccggtccc caggtgcccg atgcataagg
     1981 cttcggtggt ttctgcgacg aggcccactc gtccaggatc ggctctacat aacgccacgc
     2041 cgcttcctgc tcgtcacgcc gcacgaacaa cgcgagacgt ccgttgatca catcaagcag
     2101 caggcgctga tatgcctcca tctgcccttc cttgaaaaac ttgtcgaagg caagatccag
     2161 atggacgctc gcgaggttca tgccctcgcc gggctgcttg gcaaggcagt acaggcgaat
     2221 ggtttcgttc ggctgcaagc gaatcaccaa gcggttcgcg cccgcacgca acgcattcgc
     2281 gccgagcgcc gaatgcggca ccgggcggaa gttcacgaca atctccgccg tgcgatccgc
     2341 cagccgcttg ccggtgcgca ggaaaaacgg cacgcccgcc cagcgccagt tttcgatctc
     2401 caccttcaac gcaacaaacg tctcggtatg gctatccggc cgcacgccct t
//
LOCUS       DATGBK010000796         2845 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_310395, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000796 DATGBK010000000
VERSION     DATGBK010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2845
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310395"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VKJ77_11180"
     CDS             <1..282
                     /locus_tag="VKJ77_11180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-4-keto-pentose/UDP-xylose
                     synthase"
                     /protein_id="HMC45876.1"
                     /translation="FSVRELAHKMLKLANEISEYTESAKTVQLVETSSGDYYCAGYQD
                     VQNRVPKIDNTIQELDWKPVATMDDALRKIFEAYRGDVGTARRLVEDQS"
     gene            292..1188
                     /locus_tag="VKJ77_11185"
     CDS             292..1188
                     /locus_tag="VKJ77_11185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009890738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HMC45877.1"
                     /translation="MARIVLKIDVDTLRGTREGVPNLARLLDKYHARATFLFSLGPDH
                     TGWALRRVFRPGFLKKVSRTSVVEHYGIKTLMYGVLLPGPDIGRRAVAEMRAIHEAGF
                     ECGIHTWDHVYWQDNVRAGNREWTASQMQRSHARFVEIFGTPPVTHGAAGWQMNGYAF
                     EQIDTWGMKYASDGRGHTPYIPVLDGRTLNHVQMPTTLPTLDEILGVDGVDVSNVAAH
                     LLGLTSKQAHDQVYTLHAELEGQKLATVFEQLLAGWSAQGHSFCTMGDYHATLDRATL
                     PTYPVAWGEIPGRAGELILQPD"
     gene            1644..2105
                     /locus_tag="VKJ77_11190"
     CDS             1644..2105
                     /locus_tag="VKJ77_11190"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011549652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HMC45878.1"
                     /translation="MPIAVDQPVPDFTAPATGGDFSLSSLRGKKVVLFFYPKDNTPGC
                     TTESLQFRDLYAQFKKAGAEVIGISRDSVKSHDNFKAKLELPYTLVSDSDEAICTLFG
                     VIKMKKMYGKEVRGIERSTFLLDANGVLRREFRGVKVPGHVEQIVDAVQAL"
     gene            2580..>2845
                     /locus_tag="VKJ77_11195"
     CDS             2580..>2845
                     /locus_tag="VKJ77_11195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006402304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HMC45879.1"
                     /translation="MPLPTAPVKLGNLLPSEEYKAKARPARSSKKQASDGDLVETETD
                     FGASVGASRPAAANTANTLRAIASETLANATKGSAVEASDAAPAA"
BASE COUNT          603 a          871 c          845 g          526 t
ORIGIN      
        1 ttctcggttc gcgaactcgc gcacaagatg ctgaagctcg ccaacgagat cagcgaatac
       61 acggaaagcg cgaagacagt tcagctcgtg gaaacgtctt cgggcgacta ctactgcgcg
      121 ggttatcaag acgtacaaaa ccgtgtgccc aagatcgaca acacgatcca ggaactcgac
      181 tggaaaccgg tcgcgaccat ggacgacgcg ttgcgcaaga ttttcgaagc ctatcgcggc
      241 gatgtaggca cggcgcggcg ccttgtcgaa gatcagtctt aaggacggcg cgtggctcgc
      301 atcgttctga aaatcgacgt cgatactctg cgcggcacgc gcgaaggcgt gccgaatctc
      361 gcgcgcctgc tcgacaaata ccacgcccgc gccacgttcc tgttcagcct cggacccgat
      421 cacaccggct gggctttgcg ccgcgtgttt cgcccggggt ttctcaagaa ggtgtcgcgc
      481 acgtcggtgg tcgagcatta cggtatcaag acgctgatgt acggcgtgct cttgccgggg
      541 ccggatatcg gccgccgtgc ggttgccgaa atgcgcgcga ttcatgaagc gggcttcgag
      601 tgcggcatcc acacgtggga tcacgtgtac tggcaggaca atgtccgtgc cggcaaccgt
      661 gaatggacag ccagccagat gcagcgcagc cacgcacgtt tcgtcgagat cttcggcacg
      721 ccgcccgtta cgcacggcgc ggcgggctgg cagatgaacg gctacgcgtt cgaacagatc
      781 gacacctggg gcatgaaata cgcgtccgac ggccgtggcc atacgcccta cattccggtg
      841 ctagacggcc gaacgctgaa tcacgtccag atgcccacca cgctgcccac gctggatgaa
      901 atcctcggtg tggatggcgt ggacgtaagc aatgtggccg cgcatttgct gggtctcacg
      961 tcgaagcagg cgcacgacca ggtctacacc ctgcacgccg aactggaagg acaaaagctg
     1021 gccacggtat tcgagcaatt gctggccggc tggagcgcac aaggtcacag cttctgcacg
     1081 atgggcgact atcatgcgac gctggaccgc gcgacgctgc ccacgtaccc tgtcgcgtgg
     1141 ggcgagattc caggtcgcgc gggcgagctg atactccaac cggattagta cacttcgggc
     1201 ggattgaagc acgtgcacgc cggacgcgtg tttggggttc ggccgagaga gctattttgc
     1261 aaactcgggc ggccagttcg gccgatccgg ctctgccgaa ccgggcaagc ggatgccagg
     1321 cgagatcaga cccagccgga ccgtgcctta cccagacggc tcaggctttc cccggatccg
     1381 cactaccgtt ccaacgtgct cgttcaccag aagctggcgc acggacacgc gtcacccgac
     1441 aacaacaacc atctttcatg ggaccggagt aggcgctatg ggaccagagt aagcgctatg
     1501 ggaccagagt aagcgctaaa gcgccaactc tgatcgacac gccaagtctg gtcgacacgc
     1561 caactccggt cgaccgcaaa aactttgcat gggaccggag taagcgctaa agcgccaaat
     1621 ccggtcgaca caggagaaac ttcgtgccga tcgcagtcga tcaacccgtt cccgatttca
     1681 ccgcgcccgc aaccggcggc gacttttcgc tgtctagtct gcgaggcaag aaagtcgtgc
     1741 tgttttttta tccgaaagac aatacgcccg gctgtaccac ggaaagcctg cagttccgtg
     1801 atctttatgc gcaattcaaa aaggcaggcg ctgaagtgat cggcatctcg cgtgacagcg
     1861 tgaagtcgca cgacaacttc aaggcgaagc tggaactgcc gtacacactg gtttccgact
     1921 ccgacgaagc gatttgcacg ctctttggtg tcatcaaaat gaagaaaatg tatggcaagg
     1981 aagttcgcgg aatcgagcgt tcgaccttcc tgctggacgc gaacggcgtg cttcggcggg
     2041 agttccgtgg cgtaaaggtt ccaggccacg ttgagcagat tgtggacgct gtacaagcgc
     2101 tttgaggcac gttatattga ttcgcaatga gcgcttgccc ttccctccat ttctctttgc
     2161 gtagcgtccg gtgtttcgcg gtttcccccg cgaccggcac ggggtcccgc tacacgccac
     2221 gcctggaatc caggggcttg gcggaagttg aaaggcgctt tgaagcaggc gctgtcgagc
     2281 cgctggtccc atcgtccggg acggcggctt ttttgtttgc ggacgctccc tcacccgcag
     2341 cgtgtgcgcc ctgggcgtcc cgcgccgtcc gtgcgtttca tccccgtttt cttcaggacg
     2401 caacttccaa ggagccgatc gaaatctagg cgaaccggcg ttttcgaaac cgaagcgcgt
     2461 ctccgggcgc aaactgcatc gacgtccggc ctctgactga aagcctgggg cctgaaagat
     2521 ccacgcagga tgcgacaggc gacgcacgac atacgatccg aatcctatcg aggaaaacca
     2581 tgcctttgcc taccgcaccc gtcaagctcg gcaacctcct gccgtctgaa gaatacaaag
     2641 ccaaagcccg gcctgcccga tcatcgaaaa agcaggcaag cgacggcgat ctagttgaaa
     2701 ccgaaaccga ttttggcgcg agtgtcggcg cttcgcggcc tgctgccgcg aacaccgcca
     2761 atacgttgcg cgctattgca agcgagacgc ttgcaaacgc gaccaaaggc tcggctgttg
     2821 aagcctccga cgcagcgccc gccgc
//
LOCUS       DATGBK010000797         1683 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56099, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000797 DATGBK010000000
VERSION     DATGBK010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56099"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1525
                     /locus_tag="VKJ77_11200"
     CDS             <1..1525
                     /locus_tag="VKJ77_11200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006486177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC45880.1"
                     /translation="TLVFCSEGSPAGFDSAEYTTSTDFDAGAHAVYDTLVEFERGSLN
                     LVPGLAESWDESSDAKTFTFHLRHGVKFQTTPWFKPTRDFDADDVVFTFKRMIDPDNP
                     FQKAHPVSFPYLSDLGYDKNIASVEKLDDYTVRFTLHTSDVVFVRNIAMEFASIVSAQ
                     YADQLLKAGKTEDLNQKPVGTGPFVFREYQKDAIIRYDAHPDFWNKKDVHLAKLVFAI
                     TPDAAVRMQKLASGECQMTAFPRPADIQTARSNPKLAVLSGVGFNVAYVGYNTTHKPL
                     DNVLVRRALDMAVDKPTILKSVYEGAATVASNPMPPSQWSYNKALKDAPYDPVKAREL
                     LKQAGFPNGFSITLWAMPVQRGYNPNARLMAQLIQSDWAKIGVKANIVTYEWAEYNKR
                     AKEGGEHDAILYGWMGDNGDPDNWLGTTLGCDAVHGSNVAKWCDKQFDDLIGKARLIT
                     DQPARTKLYEQAQVVFKDQVPYTPIAHANAFQLMTKNVKGYEISPLGGHRFDGISLD"
BASE COUNT          358 a          515 c          508 g          302 t
ORIGIN      
        1 aaccctggtg ttctgttcgg aaggcagtcc ggcgggcttc gattccgcgg aatacacgac
       61 cagcacggac ttcgacgccg gcgcgcacgc agtctacgac accctggtcg aattcgagcg
      121 cggttcgctc aacctggtgc cgggtctggc cgagtcatgg gacgagtcgt ccgatgccaa
      181 gaccttcacg tttcatctcc ggcacggcgt caagttccag accacgccct ggttcaagcc
      241 cacgcgtgac ttcgacgcgg acgacgtcgt cttcacgttc aaacgcatga tcgatccgga
      301 caatccgttc cagaaggcgc atccggtcag cttcccgtat ctcagcgatc tcggttacga
      361 caagaacatt gcatcggttg aaaaactcga cgactacacg gtgcgcttca cattgcacac
      421 gtcggacgtg gtgttcgtgc gcaatatagc gatggagttc gcctccatcg tgtcggcgca
      481 atacgcggac cagttgctca aggccggcaa gacggaggac ctgaaccaga agcccgtggg
      541 cacggggccg ttcgtgttcc gcgagtatca gaaagacgcg atcatccgct acgacgcgca
      601 ccctgacttc tggaacaaga aggacgtgca tctcgcgaaa ctggtgttcg ccatcacgcc
      661 ggacgcggcc gtacgcatgc agaaactcgc gagcggcgaa tgccagatga cggccttccc
      721 gcgccccgcc gacatccaga ctgcaaggag caatccgaaa ctcgcggtgt tgtcgggcgt
      781 gggtttcaat gtggcttatg tcggctacaa caccacccac aagccgctcg ataacgtgct
      841 tgtgcgccgc gcgctggaca tggccgtcga caaaccgacc atcttgaaga gcgtctacga
      901 gggggcggcg accgtggcct cgaatccgat gccgccgtcg caatggtcgt ataacaaggc
      961 attgaaagac gcgccttatg atcccgtgaa ggcgcgtgaa ctgctcaagc aggcgggttt
     1021 tccgaacggc ttttcgatca cgttatgggc gatgcccgta cagcgcggct ataaccccaa
     1081 cgcacgcctg atggcgcaat tgattcaatc ggattgggcg aagattggcg tcaaggcgaa
     1141 catcgtgacc tacgaatggg ccgaatataa caagcgcgcg aaggaaggcg gagagcacga
     1201 cgcgatcctc tacggctgga tgggcgacaa cggcgacccg gacaactggc tcggcacgac
     1261 cctcggctgc gacgcggtgc acggcagcaa cgtggcgaag tggtgcgaca agcaattcga
     1321 cgatctgatc gggaaagcgc ggctgatcac cgaccagccg gcccgcacca agctgtatga
     1381 gcaggcgcag gtcgtgttca aggatcaggt tccttacacg ccgatcgccc acgccaacgc
     1441 gtttcagttg atgacgaaga acgtcaaggg ctacgagatc agcccgctgg gcggtcatcg
     1501 gttcgacggc atctcgctcg actgagaacg ccggctttaa ctacacgaaa ggcgacgggc
     1561 tttgaaaggc ccgtcgccgc gtggcttcat gcggggtgat cgaaactgcc ggggctcttg
     1621 tcggtgccac tccattgcgg cttgcgagcc cgctccgcct tctgcaaacc ggccttcagg
     1681 ccc
//
LOCUS       DATGBK010000798         1973 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56104, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000798 DATGBK010000000
VERSION     DATGBK010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56104"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..668)
                     /locus_tag="VKJ77_11205"
     CDS             complement(<1..668)
                     /locus_tag="VKJ77_11205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HMC45881.1"
                     /translation="MTRIVTRAPSPADAAVLVRHGVHPVIARLYASRGVCSPEEIETE
                     LKKLHAPVGLKGCDEAAAVLADALAAKRRMLVVADYDCDGATACAVAVRGLRMFGAQI
                     DYLVPNRFEYGYGLTPEIVALAASRAGGKPDLLITVDNGIASVDGVEAANALGIDVLV
                     TDHHLPGDHLPPARAIVNPNQPGCTFESKCIAGVGVIFYVLLALRAELRRRNAFTTDA
                     PEPRL"
     gene            complement(720..1829)
                     /locus_tag="VKJ77_11210"
     CDS             complement(720..1829)
                     /locus_tag="VKJ77_11210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HMC45882.1"
                     /translation="MRSIMPTPKLPDLHLLLPFALPSAADAATALHKLDRPALDRLLA
                     RATLNERVIGDDFQRTLPHERWIARQFGVVDEAPGQAADEAPLAPYMLLADGGTPGDT
                     NWACVEPVHVRIARDHLVLIDPATLGVDEHEARTLFDVVKPLIEDLGLTIQAPQPARW
                     YVAGPNLGTLAGASPLRASGRNIEIWLPHEAGTGERSRAWMKLQNEVQMAWFEHPLNE
                     AREARGLPAINSIWLHAQGTLRSVTSPFAQVMSNAPATRGLALTADVVPQAPPESFAA
                     FTASTTASDGRTLVELDPFSAPFIEQDWARWNDALGTLERDWFAPALAAIENGTLGTL
                     RLTLCSDTGSVSLTVTRGALRKFWRRRPIAALLIE"
BASE COUNT          350 a          615 c          652 g          356 t
ORIGIN      
        1 agacgcggtt caggagcgtc ggtggtgaaa gcattgcgac gacgcaactc ggctcgcaat
       61 gcgagcagca cgtagaaaat cacccccacg cccgcgatac atttgctctc aaacgtacag
      121 cctggctggt tgggattcac gatcgcgcgc gccggcggca gatgatcgcc gggaagatgg
      181 tgatcggtca ccagcacgtc gatgcccaac gcattcgcgg cttcgacgcc atctacgctt
      241 gcgatgccat tgtccacggt gatcagcaga tccggcttcc cgcccgcgcg gctcgcggcc
      301 agcgcgacaa tttcaggcgt caggccgtag ccgtattcga accggttcgg caccaggtaa
      361 tcgatctgcg cgccgaacat gcgcaagccg cgcacggcaa cggcgcaagc agtggcgcca
      421 tcgcaatcgt agtcggcgac gaccagcatg cggcgtttcg ccgcgagggc gtcggcgaga
      481 acggcggcgg cttcatcgca acctttcagt ccgacgggcg catgcagttt cttgagttcg
      541 gtctcgatct cttccggcga acacacgccg cgcgatgcat acagacgcgc aatgacagga
      601 tgaacgccat gccgcacgag gacggcggca tcggcgggag agggggcacg ggtgacgatt
      661 cgggtcatgc gtacaggccg gtgatgattc gtttcattcg cttcgtttat tcgcgtcatt
      721 cattcgataa gcagcgccgc gatcggacgc cgtcgccaga atttgcgcaa cgcgccgcgc
      781 gtgacggtca gcgacacgga gccggtgtcg ctgcacaacg tgaggcgcag cgtgccgagc
      841 gtgccgttct cgatcgcggc gagggcgggt gcgaaccagt cgcgctccag cgtgccgagt
      901 gcatcgttcc aacgcgccca gtcctgttcg atgaacggcg cggaaaacgg atcgagttcg
      961 acaagcgttc ggccatcgct tgccgttgtt gaggccgtaa aagcggcgaa agattccggc
     1021 ggcgcttgcg gcacgacatc ggcggtgagc gcaaggccgc gcgtggccgg cgcgttcgac
     1081 atcacctgcg cgaatgggct cgtcacgctg cgaagcgtgc cttgcgcgtg cagccagatg
     1141 gagttgatcg cgggcaagcc acgcgcttca cgtgcttcgt tgagcgggtg ttcgaaccac
     1201 gccatctgta cttcgttctg cagcttcatc cacgcacgcg agcgttcgcc ggtgcccgct
     1261 tcgtgcggca accagatttc gatattgcgc ccgctcgctc gcaacggcga cgcgcccgcc
     1321 agcgttccga gattcggccc tgcgacgtac cagcgtgccg gttgcggcgc ctgaatggtc
     1381 agtccgaggt cttctatcag cggcttgacg acatcgaata acgtgcgggc ttcgtgctcg
     1441 tccacaccca gcgtcgccgg atcgatcagc accagatgat cacgcgcgat ccgcacgtgc
     1501 accggttcga cgcatgccca gttggtgtcg ccgggcgttc cgccgtctgc gagcaacata
     1561 tagggcgcga gcggtgcttc gtcggccgct tgtccgggcg cctcgtccac cacgccgaac
     1621 tgccgcgcga tccagcgctc gtgcggcagc gtgcgctgga aatcgtcgcc gatcacgcgc
     1681 tcattgagcg tcgcccgggc gagcagccgg tcgagcgcgg ggcggtccag cttgtgcagc
     1741 gcggttgcgg cgtccgcagc cgatggcagc gcgaacggta agagaaggtg aaggtctggg
     1801 agcttgggcg taggcatgat gctgcgcatt gtagggcaaa gaacccggta ttttccgggt
     1861 gcttgccgtt tgcctcgtat gcgccacgtt acctatgcgt aacagcaata agtaatgcgc
     1921 gggtagctgc cgaacacgga aagtaggtct tgggccgcgt caaagctgag gct
//
LOCUS       DATGBK010000799         2730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_333575, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000799 DATGBK010000000
VERSION     DATGBK010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333575"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1062)
                     /locus_tag="VKJ77_11215"
     CDS             complement(<1..1062)
                     /locus_tag="VKJ77_11215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45883.1"
                     /translation="MESVKTVAPQRWWYLMPIIFITYSLAYLDRANYGFAAAAGINRD
                     LGISQGTSSLIGSLFFLGYCLFQVPGAIYAQRNSVKKLIFFSLILWGLCAAATGMVSN
                     IPMLMMLRFVLGVVEAAVMPSMLMYISRWFTRTERSRANTFLILGNPVTVLWMSVVSG
                     YLVHSFGWREMFVFEGIPALIWAVVWWFTVQDRPAEVTWMSDAEKIEFGARLKAEQAN
                     IAPMRDYKAAFRSSIVWKCCAIHALWSIGVYGFIMWLPSILKAASTIDIVSVGWLAAV
                     PYLAAIILMLLASWLSDKTRNRKLFVWPLLLVGTIAFVASYLIGGSHFWISFALLVVA
                     GATMYAPYGPFFALIPELIP"
     gene            complement(1149..1916)
                     /locus_tag="VKJ77_11220"
     CDS             complement(1149..1916)
                     /locus_tag="VKJ77_11220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC45884.1"
                     /translation="MTQLFDLSGRTALVTGSARGIGFALAEGLATAGASVIVNGTRAD
                     TVAEAAGRLKSKGLNAQGHAFDVTDEQAVADAFAQWDKNGVQVDIVINNAGIQFRKPL
                     VELELSDWQRVIDTNLTSAFIVSKQAARRMIARGTGGKIINIGSLTSEAGRATVGAYT
                     AAKGGIKMLTRAMSAEWASSDIQANAIGPGYILTDMNKPLVENAAFDAWVKSSNPSQR
                     WGRPEELVGTAVYLSSAASSYVNGQIIYVDGGWLAVL"
     gene            complement(2020..>2730)
                     /locus_tag="VKJ77_11225"
     CDS             complement(2020..>2730)
                     /locus_tag="VKJ77_11225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HMC45885.1"
                     /translation="LHRQVLNQMGEQICSGKFAPGDILPAEPVLAEQMQVSRITIRET
                     MKSLSAKGMLEVRRRYGTIVLPRSQWQLFDPDVITWRARAGAIDEGLIQDLMELRLII
                     EPNAAKLAAKRATAEDRVAVRRAFKAMERAVAGHGEYVPADLAFHGAILVACHNQFIQ
                     QMQNALSAILRTSFELSSEIAGGPARSLPMHEALCVAIETGDPAGAEEAVLTLIKRAE
                     KDFEDRAALNLVANNAPI"
BASE COUNT          538 a          861 c          817 g          514 t
ORIGIN      
        1 cggaatcagt tccggtatca gcgcgaaaaa tggaccgtac ggcgcgtaca tcgtagcgcc
       61 cgccaccacc agcagtgcga acgagatcca gaagtgcgat ccgccgatca gatacgaagc
      121 cacgaatgca atggtcccca cgagaagcag cggccacacg aacagcttgc ggttgcgggt
      181 cttgtccgag agccacgacg cgagcagcat caggatgatc gccgcgagat agggaactgc
      241 agcgagccag ccgacggaaa caatatcgat cgttgaagca gccttgagaa tcgaaggcag
      301 ccacatgatg aagccgtaca cgccgatgct ccacagcgca tgaatcgcgc agcatttcca
      361 gacgatcgaa gaacggaacg ccgccttgta gtcgcgcatc ggcgcgatgt tcgcctgctc
      421 agccttcagg cgggcgccga attcgatctt ttcggcgtcg ctcatccagg tcacctcagc
      481 cgggcgatcc tgcacggtga accaccagac taccgcccag atgagcgccg ggatgccttc
      541 gaagacgaac atctcgcgcc agccgaagct gtggaccaga tagcccgaca cgaccgacat
      601 ccacagcact gtcaccgggt tgccgagaat caggaacgta ttggcgcggg agcgttcagt
      661 gcgcgtgaac catcggctga tgtacatcag catcgacggc atcaccgctg cttccactac
      721 gccgagcacg aagcgcaaca tcatcagcat cggaatattg ctgaccatgc cggtcgctgc
      781 agcgcacagg ccccaaagga tgagactgaa aaaaatcaac ttcttcacgc tgttgcgctg
      841 cgcgtagatt gcgccgggca cttggaacag gcagtagccg agaaaaaaca acgaaccaat
      901 cagcgacgag gtgccttgcg agatgccaag gtccctgttg atcccggccg ccgcggcaaa
      961 accatagttc gcgcggtcca gatacgcaag gctgtaagta atgaagatga tgggcatcag
     1021 ataccaccat ctttggggtg caacggtttt gacgctttcc atgatgtctc cagatcggta
     1081 cggcgcgcac actgttcggt tagcgcgggt cattcttttt gttctgatgt ccccgcgtgg
     1141 acttgcactt aaagcacggc tagccagcct ccatcgacgt agatgatctg gccgttcaca
     1201 taactcgatg ccgcggacga caggtacacc gccgtgccca cgagctcttc cggcctgccc
     1261 cagcgttgcg aaggattgct gctcttgacc caggcatcga aggccgcgtt ctcgacgagc
     1321 ggcttgttca tgtcggtcag gatgtagccc ggaccgatcg cgttcgcctg aatgtccgac
     1381 gacgcccact cagcgctcat cgcgcgagtc agcatcttga tcccgccctt ggccgccgtg
     1441 taggcgccaa ccgtcgcgcg cccggcttcg ctcgtgagcg agccgatatt gattatcttg
     1501 ccgcctgtgc cgcgcgcgat catgcgtcgc gccgcctgct tggagacgat gaacgcgctc
     1561 gtcaggttgg tgtcgatcac gcgctgccag tcgctcaatt cgagttcgac aagcggcttg
     1621 cgaaactgga tgccagcgtt gttgatgaca atgtcgacct gcactccgtt cttgtcccat
     1681 tgcgcgaacg catcggcgac ggcctgttcg tcggtcacgt cgaaggcatg gccttgggcg
     1741 ttgagcccct tgcttttaag ccggccggcc gcttcggcaa ccgtgtcggc acgcgtgccg
     1801 ttcacaatca cgctggcgcc agctgtggcg agcccctcgg cgagcgcaaa gccaatgcct
     1861 cgcgcggagc cagttacgag cgccgtgcgg ccgctcaagt cgaatagctg tgtcatgcgc
     1921 tgttcctttt ccgggtgcaa gtgcgagacg cgagtgcgcc cctcgcgagg cggaacgccg
     1981 gtcgcgataa cgttgatttc acatccgccg gttaagacgt cagatgggtg cgttgttggc
     2041 gacgagattc agagcggcgc gatcttcgaa gtccttctcc gcgcgcttga tgagcgtgag
     2101 aaccgcctct tccgctcccg ccgggtcgcc tgtctcgatc gcgacgcaaa gcgcttcgtg
     2161 catcggcagc gaacgggccg ggccgccggc tatttcggag ctgagttcga agctcgtgcg
     2221 caggatcgcc gacagcgcgt tctgcatctg ctggatgaac tggttgtgac aggccacgag
     2281 gatcgcgcca tggaacgcga gatcggcggg aacgtattcg ccgtggccgg cgacggcgcg
     2341 ctccatcgcc ttgaaggcac gccttaccgc gacgcggtcc tccgccgtcg cgcgcttggc
     2401 agcgagcttg gccgcattcg gctcgataat cagccgcagc tccatcaggt cctggatcag
     2461 gccttcgtcg attgcgcccg cccgcgcgcg ccaggtgatc acgtccggat cgaacaactg
     2521 ccattgcgag cgcggcaata cgatcgtgcc gtaacgccgg cgcacttcaa gcatcccctt
     2581 ggcggagagc gatttcatcg tctcgcggat tgtgatgcgg ctcacctgca tctgctcggc
     2641 gagcacgggc tcggcgggaa gaatatcccc cggcgcaaac ttgcccgagc aaatctgctc
     2701 gcccatctga ttcaggacct gccgatgtag
//
LOCUS       DATGBK010000800         1813 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_195202, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000800 DATGBK010000000
VERSION     DATGBK010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195202"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..533
                     /locus_tag="VKJ77_11230"
     CDS             <1..533
                     /locus_tag="VKJ77_11230"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HMC45886.1"
                     /translation="VLQSLTHPGAFRARDYEIGAQGIGENVRPYLIRSEDEELGYRTV
                     GWPARMEEIGLYFGAYGGVVELSFYRERAARRLSAAKLHDLAALGAPMAAAFDRQSAL
                     SAGPREPAATALMAPLSRREAEIAGMLLIGCSSEAIALRLGISRYTVKDHRKQIFRKL
                     GVGSLAELFALHRRLG"
     gene            630..1730
                     /locus_tag="VKJ77_11235"
     CDS             630..1730
                     /locus_tag="VKJ77_11235"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC45887.1"
                     /translation="MKYVRMPIEVESPEEFGYGRIQYNLSESSIADQTLAGLNLQVPD
                     LKLLYGEHRGSPALRSLIAGESTGLGVDDVLITTGAAGALFIITTALLGAGDHLVVVR
                     PNYATNLETPKAIGCDITHIDLHFEESFAIDFEKLAAAITPRTKVISVTCPHNPTGVV
                     VSEAELQALVDLARKNGCYLLVDETYRDLSYGRLLPLAASLGSHVISVSSLSKAYGAP
                     GLRLGWIVTKDARLQQLFLAAKEQISICGSVIDEWVGEQILSNRSAILEPTLIEMRTR
                     LEIVSNWIAGEDLLEWVEPAGGVVCFPRMRSEPAGGTDAFYRRLIEEQGTYVGPGHWF
                     EMSDRYFRLGYGWPTRAELEAGLKGISTALRG"
BASE COUNT          313 a          529 c          605 g          366 t
ORIGIN      
        1 ccgtactcca gtcccttact catcccggcg cgtttcgcgc gcgcgactac gagatcggag
       61 cgcaaggcat cggcgaaaac gtgcggccgt atctcatcag gagcgaggac gaggaactgg
      121 gctatcgcac ggtggggtgg cccgcgcgga tggaggaaat cgggctgtac ttcggggcgt
      181 acgggggcgt ggttgaactc agtttctacc gtgaacgcgc ggcacgcagg ctgtccgccg
      241 ccaagctgca cgatctggcg gccctgggcg cgccgatggc cgcggcgttc gaccggcagt
      301 ccgcgctgag tgccgggccg cgggagcccg ctgcgacggc cctgatggcg ccgttgtcgc
      361 ggcgggaagc cgaaattgcc gggatgctgc tgatcggttg cagctcggag gcaatcgcgc
      421 ttcgtcttgg catcagtcgt tatacggtga aggatcatcg caagcagatc tttcgcaagc
      481 ttggcgtcgg ctcgcttgcc gagttgttcg ccctgcaccg ccggctcggc tgaacgcctt
      541 gcgcgcgcaa gccgatccct ctctggaggg atggtgatcg cgttgcgcgg ctgtcaccat
      601 aggcccttca tttaggtgga gagaggctta tgaaatacgt ccggatgccc attgaagtcg
      661 agtctcccga ggagttcggc tatgggcgca ttcaatacaa cctgtcggag agctcgattg
      721 ccgaccagac ccttgctggc ctgaatctgc aggtgcccga cctgaagctg ctctacggcg
      781 agcatcgagg cagcccggcc ttgcgttcgc tgatcgccgg tgaaagcacg gggcttggcg
      841 tcgacgatgt cctgattacg acgggcgcgg caggggcgct ctttatcatc accacggcgc
      901 ttctcggcgc gggcgaccat ctggtcgtgg tccgtccgaa ctatgcgacg aatctggaaa
      961 caccgaaagc tatcggctgc gacatcacgc atatcgatct tcatttcgag gagtccttcg
     1021 caattgattt cgagaagctc gccgcggcga tcacgccccg cacgaaggtg atcagcgtga
     1081 catgcccgca caatcccacg ggcgtcgtgg tttccgaggc cgagttgcaa gcgctcgtgg
     1141 accttgcgcg gaaaaacggc tgctaccttc tggtggacga aacctatcgc gatctttcat
     1201 acggccgcct gctgccgctc gcggcgtcgc tgggttcgca cgtcatcagc gtgtcctcgt
     1261 tgtcgaaggc gtacggggca ccgggcctgc ggctcggatg gatcgtcacg aaggatgcgc
     1321 ggctgcagca gctctttctg gcggcgaagg agcagatcag catttgcggc agcgtgatcg
     1381 acgaatgggt gggcgagcag attctttcga acaggtcggc cattctggaa ccgacgctca
     1441 tcgaaatgcg cacgcgtctg gaaatcgtga gcaactggat cgcaggcgaa gatctgcttg
     1501 aatgggtcga gcctgcgggc ggcgtggttt gctttccgcg catgcgatcc gaacccgcag
     1561 gagggacaga cgcgttttat cgccggctga ttgaagagca ggggacgtat gtgggccccg
     1621 gtcactggtt cgagatgtcc gaccgctact tcaggctggg atatggctgg ccgacccgcg
     1681 cggagctgga agcggggctc aagggcatct ccacggcttt gcggggttga gcgggtgggt
     1741 atgcccactc gccttcaact ttgatagttg tcttgtctat tcgataactt cttccgaccg
     1801 cacgcttgca cgg
//
LOCUS       DATGBK010000801         1874 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_195210, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000801 DATGBK010000000
VERSION     DATGBK010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1874
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195210"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1874
                     /locus_tag="VKJ77_11240"
     CDS             <1..>1874
                     /locus_tag="VKJ77_11240"
                     /inference="COORDINATES: protein motif:HMM:NF016330.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HMC45888.1"
                     /translation="AKARGYVDEVTRLHWDDDVLRANVQGTQRQPYTVEVMFNEQHGK
                     LSAQGHCSCPVGFGCKHAAAVLLASAADRPRESETVRPEVAGWLEGFRSRFASTRNAS
                     AKKPGESAGALALVYVLGTSRIMRTAEVALYKVRLSPDGSFQTLDRPWTNLDAALVKQ
                     PKFVSDEDMTIVRGLLIGRTRNDFGGFGLHGEEGADLMHRMLATGRLFSAMPADHDAA
                     EPRRPLREGEQRPGRIEWTPDPDDRVRPVLQTEPPATLVIPTEPLWFADAQTREAGVV
                     DMPQPARQLADYLSMPPISLAEAPLVSAMLREVDSDLPPPPEPETLNVRIIDTEPVPV
                     LVLDTRPVNSSWRPRDERTAANVLDFAIVSFDYDGFNIDPTRATTVMRAASGEMVQVR
                     RRHDVEARYLAALYDLGFRQIPSHQRFGPKPIPSGVLGLPVPDAWAVFTNDALPALRD
                     DGWRVSMSPEFRFDFIEIDDIQGTARQGTDGWFDLELGIAVGDRSVRLEPLLADLFQR
                     DRRWLAGAIDSIHDDEGIELKTDLGERLRVRASRIKPVVRVLIDLFDTLGTHPLRVSE
                     QDAGRLEALSDTGRWEFHGDLSIRELAQRLQEGPGLREVPVPHGLNAELRVYQREGLN
                     "
BASE COUNT          325 a          612 c          609 g          328 t
ORIGIN      
        1 ttgccaaggc acgcgggtat gtggacgaag tgacgcgtct gcactgggac gacgacgtac
       61 tgcgcgccaa cgttcaaggg acgcaacgcc agccttatac cgtggaggtg atgtttaacg
      121 agcaacacgg caagctttcc gcgcaaggcc attgttcgtg cccggtcggg ttcggctgca
      181 agcacgccgc cgccgtacta ctcgcgagcg ccgcggaccg gccgcgcgaa tccgaaaccg
      241 tgcgcccgga agtagcgggc tggcttgaag gattccgctc gcggttcgcc tccactcgca
      301 acgcctccgc aaaaaaaccc ggcgagtcgg ccggtgcgct cgcgctcgtt tatgtgctgg
      361 gaacgtcgcg catcatgcgc accgccgaag tcgcgctgta taaagtgcgg cttagcccgg
      421 acggctcgtt ccagacgctc gaccggccct ggacgaatct ggacgcggcg cttgtcaagc
      481 agccgaagtt cgtcagcgat gaagacatga ccatcgtgcg ggggctcctc attggacgta
      541 cccgcaacga tttcggtggc ttcgggctgc acggcgaaga aggcgcggac ctgatgcatc
      601 gcatgctggc gacaggacgg ttgttcagcg ccatgccggc cgaccacgac gccgcggagc
      661 cgcgccggcc gctgcgcgaa ggtgagcaac ggccgggacg tatcgagtgg acgcccgatc
      721 cggacgatcg cgtgcgtccc gtgctgcaaa ccgagccgcc cgccacgttg gtcattccca
      781 ccgaaccgct gtggttcgcc gacgcgcaaa cgcgtgaagc gggtgtcgtc gatatgccgc
      841 aacccgcgcg gcaactggcc gattatttgt cgatgccgcc catctcgctc gccgaagcgc
      901 cgctggtcag cgcgatgctg cgtgaagtcg actccgacct gcccccgccg ccggagccgg
      961 aaacgctgaa cgtgcgaatt atcgatacgg aaccggtgcc ggtgctcgtg ctcgacacac
     1021 ggccggtcaa tagcagttgg cgtccccgcg acgaacgcac cgccgcgaac gtgctcgact
     1081 ttgccatcgt gagtttcgat tacgacggtt tcaacattga ccccacgcgc gccaccacgg
     1141 tcatgcgcgc cgcgtccggc gagatggttc aggtgaggcg ccgtcacgac gtagaggcgc
     1201 gttacctggc cgcgctctac gatcttggct tccgccagat tccctcgcat cagcgttttg
     1261 gacccaagcc catcccgagc ggcgtgctcg gcttgcccgt gcccgacgcg tgggccgtgt
     1321 tcaccaacga cgcgctgccc gcattgcgcg atgacggctg gcgcgtgagc atgtcgccgg
     1381 aatttcgctt cgacttcatt gagatcgacg acatccaggg caccgcgcgc cagggaaccg
     1441 acggctggtt cgacctggaa ctcggcattg ccgtgggcga tcggagcgtt cggctcgaac
     1501 cgcttctggc tgacctgttc cagcgcgacc ggcgctggct ggcaggcgct atcgattcaa
     1561 tccacgacga cgaaggcatc gagctcaaga ctgatcttgg cgaacggctg cgagtgcggg
     1621 cgtcgcggat caagccggtg gtgcgcgtgc tgatcgatct cttcgatacc ctcggcacgc
     1681 atccgctgcg cgtctccgaa caggacgccg ggcggctgga agcgctcagc gacacgggcc
     1741 gttgggagtt tcacggcgat ctttccattc gcgagcttgc tcaacgtttg caagaaggcc
     1801 cggggcttcg ggaagtaccc gtgccgcatg gcttgaatgc cgagcttcgg gtgtatcagc
     1861 gcgaagggct caac
//
LOCUS       DATGBK010000802         1607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_333616, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000802 DATGBK010000000
VERSION     DATGBK010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333616"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1170)
                     /locus_tag="VKJ77_11245"
     CDS             complement(<1..1170)
                     /locus_tag="VKJ77_11245"
                     /inference="COORDINATES: protein motif:HMM:NF013362.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HMC45889.1"
                     /translation="MSAIASKRTRVENRVVSSREVALQVVRDVFGDHPRGARESLDYR
                     TRAANTSPRDRAFATELAYGSIKMRRWLDYQLAPYLGERAATLPKAIGEILRLGVYQL
                     RVMNGVEAYAAVSECVGLARRYGHKGTAGLVNAVLRKVSTDPVREAPGDDDDAVALRA
                     SLPTWIVTQWHERFGADALPLILAGVNAPAAIGLCVDFRRGSRDEALAILRGANIPAE
                     ASAFARDAIVLDGTSPSTGVDALADGRWDMHAEAACFPVDLLDPQPHEIIYEGCSGRG
                     NKTLQIAGRTGDTGRINAVDIESRRVTVAQERMDNAHVTSAMLAVADATVASGDADCD
                     RVLVDAPCSGLGIVGRQPEARWRKDRGDGERLAPVQAAILAAAAQRLKSGGTLVYS"
     gene            complement(1167..>1607)
                     /locus_tag="VKJ77_11250"
     CDS             complement(1167..>1607)
                     /locus_tag="VKJ77_11250"
                     /inference="COORDINATES: protein motif:HMM:NF014908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45890.1"
                     /translation="ETYGELHDRLALLGAQRLGDAIARLLNGTLEHRPQSASGVAQAN
                     IERTLTRPLTKDDTIINWSQAAYDITNLIRSLAPAPAARAVVDGESFKVLAARVARDG
                     ETGITDDDGLVVSAASGGVVLLRVVPPNRGGMTGAAYYRSQATA"
BASE COUNT          298 a          540 c          489 g          280 t
ORIGIN      
        1 cgagtacacg agcgttccgc cgctcttcag gcgctgcgcc gcagcagcga gaatcgccgc
       61 ttgcaccggc gctaaccgtt cgccgtcgcc acgatctttg cgccaacgcg cctcgggctg
      121 gcgacccacg attcccagcc ccgaacacgg ggcatcgacg agcacgcgat cgcagtccgc
      181 atcaccactt gcaacggtcg cgtcggcgac ggccagcatg gccgacgtta cgtgcgcgtt
      241 atccatgcgt tcctgcgcga ccgtgacgcg acgcgattca atatcgactg cgttgatgcg
      301 tccggtatcg ccggtgcggc cggcgatctg aagcgtctta ttaccgcgcc cgctgcaccc
      361 ttcgtagata atctcgtgcg gctgcggatc gagcagatcg accggaaagc aggccgcttc
      421 ggcatgcatg tcccagcggc catcggcaag cgcatccacg ccggtcgacg gcgacgtgcc
      481 gtcgaggacg atggcatcgc gcgcaaaggc cgatgcttcg gccggaatat tcgcgccgcg
      541 taaaatcgcg agcgcttcat cgcgcgaccc tcgccgaaaa tcgacgcaca acccgattgc
      601 cgccggtgca ttgacgcccg ccagaatgag cggtagcgcg tcagccccga aacgttcgtg
      661 ccactgcgtg acgatccacg tcggtaacga ggcgcgcaac gcgacggcat cgtcgtcgtc
      721 acccggcgct tcacgcacgg gatcggtcga aactttgcgc agcaccgcat tcacaagacc
      781 cgccgtgcct ttgtgtccgt aacgacgcgc aagtccgacg cattcggaaa cggcagcgta
      841 cgcttcaacg ccgttcatta cgcgcaactg atacacgccc aaacgtaata tctcgccgat
      901 tgctttgggc agcgtagcgg cacgttcgcc cagatacggg gcaagttgat aatccagcca
      961 acgccgcatc ttaatcgatc cgtacgccag ctcggtcgcg aacgcgcggt cccgcggtga
     1021 cgtattcgcc gcgcgtgtgc gatagtccag agattcgcgc gcaccgcgcg gatgatcgcc
     1081 gaatacgtcg cgcacgactt gcagcgcaac ttcgcgcgaa ctgaccacgc ggttttctac
     1141 ccgggtgcgt ttggacgcga tggcgctcat gccgtggcct gcgagcgata gtacgcagcg
     1201 cccgtcatcc cgccgcgatt gggcggcacg acgcgtaaga gaacgacgcc gccgctagcg
     1261 gcggaaacga caagcccatc atcatccgtt atgcccgttt ccccgtcgcg tgcaacacgc
     1321 gccgccagca ccttgaacga ttcgccgtcg acgacggcgc gggcggcggg cgcgggtgca
     1381 agcgaacgta tcagattcgt tatgtcgtag gcagcttggg accagttgat aatcgtgtcg
     1441 tccttggtga gcggccgcgt cagcgtgcgc tcgatattgg cttgcgcgac accggacgcc
     1501 gattggggcc tgtgttcgag cgtaccgttg agaagccgtg caatcgcatc acccaggcgc
     1561 tgcgcaccca agagtgcgag ccggtcatgc agttcgccat acgtttc
//
LOCUS       DATGBK010000803         2455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_33326, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000803 DATGBK010000000
VERSION     DATGBK010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33326"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..537
                     /locus_tag="VKJ77_11255"
     CDS             <1..537
                     /locus_tag="VKJ77_11255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HMC45891.1"
                     /translation="ALSPFSLLLMVQPDGLIAAVDETEAGTFDVTLCVPAEAVPAFLQ
                     GGQAAVMKHVRIEGDAEFATTIAKLAEHLRWEPEEDLARVIGDGPAHRIGSTVRKVGE
                     QARRSGRNLLESVAEYLLDEQPQLVRRSALDTFNDELSVARDALARVEKRIERLEQKA
                     EARGASASGAASARGTSK"
     gene            549..2126
                     /gene="ubiB"
                     /locus_tag="VKJ77_11260"
     CDS             549..2126
                     /gene="ubiB"
                     /locus_tag="VKJ77_11260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HMC45892.1"
                     /translation="MRLLRFLKIFFTVVRFGLDELVMSGIQDRRVRLLMRVTTFGRKF
                     DVPRGVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSDVAIA
                     IVEKSLGSPIDVLFDDFERVPVASASIAQVHFAKIKTGAHVGKAVAVKVLRPNMLPVI
                     DSDLALLRDIAYWTERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFA
                     GLDLLMVPEMYWDYSAPTVLVMERMVGVPISQVEVLRAAGVDIPKLAQEGVEIFFTQV
                     FRDGFFHADMHPGNIQVSLAEETFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY
                     HRVATLHLESGWVPPSTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFN
                     VEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYLERWMNEQVGWRGWYERLKLE
                     APQWSKTLPQLPRLIHQVLADRHDQPGGGNDELMRMILIEQKRTNRLLQALLIFGLAV
                     GAGAVLVQLWQVFAYGG"
     gene            2134..>2455
                     /locus_tag="VKJ77_11265"
     CDS             2134..>2455
                     /locus_tag="VKJ77_11265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiopurine S-methyltransferase"
                     /protein_id="HMC45893.1"
                     /translation="MIDTRKPTVPPSFDTRDPNFPDFWNERFDQRFTPWDQAGVPEAF
                     KAFALEHRNALANVLIPGCGSAYEALWLARENWPVRAIDFSPSAVAAAREQLGEYAGV
                     LEQAD"
BASE COUNT          464 a          714 c          784 g          493 t
ORIGIN      
        1 gcgctctcgc cgttttcact gttgctgatg gtccagccgg acgggctgat tgctgccgtc
       61 gacgagaccg aggcgggtac gtttgacgtt accctctgcg ttcccgccga agccgtcccg
      121 gcgttcctgc agggcggcca ggcggctgtg atgaaacacg tccgcataga aggcgacgcg
      181 gagttcgcga ccacaatcgc gaagctggcc gaacatctgc gctgggagcc cgaagaagat
      241 ctggcccgcg tgattggcga cggtcccgct catcggattg gctcgaccgt acgcaaggtg
      301 ggcgaacagg cacgccgttc gggacgcaat ctgcttgaat cggtggccga atacctgctc
      361 gacgaacaac ctcaactcgt gcgccgcagc gccctcgaca cgttcaatga cgagctgtcg
      421 gtagcccggg atgcgctcgc gcgcgtcgaa aagcgcatcg agcgactcga acaaaaagcc
      481 gaagcccgag gcgcgtcagc gtccggcgcc gcgtcagcgc gcggcacgag caagtaatgg
      541 gctgaaccat gcgtcttctg cgtttcctca agattttttt caccgtagtg cgattcgggc
      601 tcgacgaact ggtgatgagc ggcatccagg accggcgtgt ccgcttgctc atgcgcgtca
      661 ccacgttcgg ccgcaagttc gacgttccac gcggggtgcg gctgcgtctc gcgctcgaaa
      721 gccttgggcc aatcttcgtc aagttcgggc aggtgctgtc aacgcgccgc gatttgctcc
      781 ctgtcgacat agcgaacgag ctcgccaagc ttcaggacca agtgccgcca ttcgattcgg
      841 atgtcgctat cgcgattgtg gagaagtcgc tgggttctcc cattgacgta ttgttcgacg
      901 acttcgaacg tgtgccggtg gcgagcgcat cgatagcgca ggtccacttt gccaagatca
      961 agactggcgc gcatgtgggc aaagccgtgg cggtgaaagt gttgcggccg aacatgctgc
     1021 cggtgatcga ctcggatctc gcgttgctgc gagacattgc gtactggacc gagcggctat
     1081 gggcggacgg caagcggtta aagcctcgtg aagtggtcgc cgagttcgat aaatatctcc
     1141 acgacgaact tgacctgatg cgcgaggctg cgaacggcag ccagttgcgg cgcaatttcg
     1201 cgggccttga tttgctgatg gtgcctgaga tgtattggga ctattcagcg cccaccgtgc
     1261 tggtgatgga gcgcatggtc ggcgtgccga tcagccaagt ggaagtactg cgagcggccg
     1321 gcgtggatat tccgaagctg gcgcaggaag gcgtcgagat attctttaca caagtattcc
     1381 gagacggctt tttccacgcc gacatgcatc ccggcaacat ccaggtgagt ctcgcggaag
     1441 agacgttcgg gcgatatatc gcgctggact tcgggattgt cggcgcgttg tccgacttcg
     1501 ataaaaacta tctggcgcaa aatttcctgg cgttcttcaa gcgcgactat caccgtgtgg
     1561 ccacgctgca tctggagtcg ggctgggtgc cgccgagcac gcgtgtcgaa gagctggaaa
     1621 gtgctatccg cgcagtctgc gaaccgtact tcgaccgggc gttgaaggat atttcgcttg
     1681 gccaggtgct catgcggctc ttttccactt cgcgccgctt caacgtcgag attcagccac
     1741 aactcgtgct gttgcagaaa acgatgctga acgtggaggg gctcggccgg tcgctcgacc
     1801 ccgaactcga tctgtggaag accgccaagc cgtatctcga acgctggatg aacgagcagg
     1861 tcggctggcg cggctggtac gaaaggctga aactggaagc gccgcaatgg agcaagacgc
     1921 tgccgcagtt gccgcgtctg atccatcagg tgctcgctga ccgccacgat cagccgggcg
     1981 gcggcaacga cgagctcatg cgcatgatcc tgatcgagca gaaacgcacc aaccgtttgc
     2041 tgcaagcctt gctgatcttc gggctggcgg tgggcgcggg cgctgtgctt gtccagctct
     2101 ggcaggtatt tgcatacgga ggttgagggc accatgatcg acactcgcaa acccactgtg
     2161 cctcccagct tcgacacgcg agacccgaat ttccccgatt tctggaacga gcgcttcgac
     2221 cagcgcttta cgccttggga tcaggccggc gtgcctgaag cgttcaaggc gtttgccctt
     2281 gaacatcgga acgccttggc gaacgtgctg atccccggtt gcggcagtgc atacgaagcg
     2341 ttgtggcttg cgcgcgaaaa ctggccggtc agggctatcg atttctctcc aagcgccgtt
     2401 gcggcggcgc gtgaacagct gggcgagtac gccggcgtgc tggaacaagc cgact
//
LOCUS       DATGBK010000804         2505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_287403, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000804 DATGBK010000000
VERSION     DATGBK010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287403"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..444
                     /locus_tag="VKJ77_11270"
     CDS             <1..444
                     /locus_tag="VKJ77_11270"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015601097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HMC45894.1"
                     /translation="AEIKARYDDMVKQAGGGKEYHLHHILVDNEAQAKDLIAKIKAGA
                     SFEDLAKQFSKDPGSGKNGGDLDWSSPQAYVSEFGAAAEKLKKGEMTDEPVKTQFGWH
                     IIRLDDIRDVAPPPLEQVKDQIAKQIQQEKLQAFEEGLQKKAVIK"
     gene            complement(566..2505)
                     /gene="purL"
                     /locus_tag="VKJ77_11275"
                     /gene_synonym="purI"
                     /pseudo
     CDS             complement(566..2505)
                     /gene="purL"
                     /locus_tag="VKJ77_11275"
                     /gene_synonym="purI"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213195.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
BASE COUNT          534 a          773 c          721 g          477 t
ORIGIN      
        1 gccgagatca aggcgcggta tgacgacatg gtgaagcaag cgggtggtgg caaggaatat
       61 cacttgcacc atatcctggt cgacaatgaa gctcaggcta aggacttgat tgcgaagatc
      121 aaggctggcg cgagttttga agatttggcg aagcagtttt cgaaggaccc gggatcgggc
      181 aagaatggcg gcgatctgga ctggtcaagc ccgcaagcgt atgtgtcgga gtttggcgcg
      241 gcggctgaga agttgaagaa gggtgagatg accgacgagc cggtgaagac gcaattcggc
      301 tggcacatca tccggttgga cgacattcgc gatgtcgcgc cgccgccgct cgagcaggtc
      361 aaggaccaga ttgcgaagca gattcagcag gaaaagctgc aggcttttga agaaggtttg
      421 cagaagaagg ctgttatcaa gtaattagtc ggatgttcga cgatgtgaaa aagccccgct
      481 ggcgcaaacc agcggggctt tttcattggg cttgggttct gcgttgcggt gccctcttcc
      541 acggtgaaaa gggcaccgcg cgactttatc ccacccagcg ccgtgcgttc tggaacacgc
      601 gcaaccacgg acttgcgtct gcagtccaag cggcaggcgt ccagctcatt tgcacattcc
      661 tgtgcacccg ctccatgtgc ggcatcagca ccgtgaagcg tccgtcaggc gtcgtcaccg
      721 acgtaatccc ttccggcgag ccattcggat tcaacggata acgttcagtt gcagcgccct
      781 ggttgtcgat gaaacgcatt gcgactaaag cgttcgcagt atctccctgc tgcgcgaaat
      841 ccgcgaagcc ttcaccgtgt gcgacggcca ccggaatacg cgaaccttcc attccggcga
      901 agaatatcga cggcgaactt tggatctcaa ctgacgcaaa ccgcgcctcg aattgctccg
      961 atttgtttct cgtgaacttc ggccacgcat gcgcgccggg gatcatcgaa gcgaggctgc
     1021 tcatcatctg gcaaccattg caaatgccca gtgcaaaggt atccgcgcga ccgaaaaacg
     1081 cctcgaacat atcagccaga cgcggattga aacgaatcgt cttggcccac ccttcgccag
     1141 cgcccagcac gtcgccgtat gagaaaccgc cgcaagcaac cgcaccagca aaatccgcca
     1201 gcgtgacccg gccttccagc agatcgctca tgtgaacgtc gtgtgtgtcg aagcccgaac
     1261 ggtcgaacgc ataagccgtt tccagatgtg aattgacgcc ctgctctcgc aggatcgcca
     1321 cgcgcggacg tgcacccttg ctgacaaacg gagccgatac atcctgcgtc ggatcaaaag
     1381 tcagcaccgg cgaaatcccg gatcagcagg atcgagcaac gcatcgtatt cagcatcggc
     1441 acaggcgggg ttatcgcgta accgcgcgat gcgccagctc acttcgctcc aagcacggtg
     1501 caactcatgg cgcggcgctt catagatctt cttcgcatcg cgataaattt cgattgcgtc
     1561 gcgctcgttc ggcttgccga tcacttcgga acacgccgac agtccgtgtt cacgcaacac
     1621 agccagcacg gcatcgcgat ccgccagtgg cacctggatc acgccgccca actcttcggc
     1681 gaacaacgcg cgaatggtcc ggtcttcacg acggccgctg gtctgcttcg cccagtcctt
     1741 ggcatcgccg taatcggatt cgtggctggt gtcgaggatc agcatatcga cgttcagcga
     1801 cacgcccaca tgccccgcga acgccatttc gcaaacagtg gcccagaggc cgccatcgga
     1861 acgatcgtgg tatgcgagca gcttgcccgc ggcattcagc gactggatcg cgttgaagaa
     1921 ccgcttcaag tcctcggcgt cgtcaacgtc gggaaccgta tcgccaatct gctgcgtcac
     1981 ttgcgccaga atgctgccgc caagacgatt cttgccgcgg ccgaggtcga tcgaaatcag
     2041 caccgtatcc gtgccacgct gcaactgcgg cgtgagctgg cggcgtacat cttcgaccgg
     2101 tgcgaatgcc gaaatgatca gcgacaccgg cgatacgact tccttcgccg cgcccgtcgc
     2161 gtcctgccat ttggtgcgca tcgacagcga atccttgccg acaggaatac tgatgcccag
     2221 cgccgggcac aactccatgc cgatagcctt cacggtgtca aacagcgccg cgtcttcgcc
     2281 gggactgccg cacgcggcca tccagttagc ggacagcttc agcttgttca acgattcgat
     2341 gggagccgac gcgatgttcg tcaccgcttc gcccaccgcc atgcgtccgg atgcgggtgc
     2401 atcgatcacc gcaagcggcg tgcgctcggc aatggtcatt gcctcgccac ggaagcccgc
     2461 gtagtccatg gtcgtgatcg cgcaatcggc gaccggcact tgcca
//
LOCUS       DATGBK010000805         2274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_102113, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000805 DATGBK010000000
VERSION     DATGBK010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102113"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..616
                     /locus_tag="VKJ77_11280"
     CDS             <1..616
                     /locus_tag="VKJ77_11280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HMC45895.1"
                     /translation="GHLVVSAAATQGSVEWRASLQNEVPLLALAFPHISHFQIRNRGT
                     VCGSIAHADPSAELPLVLSVLGGDVMLRSKKRKRVLKAQDFFQGMLMTAREPDELVEG
                     VRFPLKRAGERYAFTEFSARHGDFAMVACATVVTDTSIRIAVGGVADRPVVEKWPRLH
                     GDDLRSALNDLSWKLNAQDDTHVSAMYRRHLVRQLGWRVIEEAK"
     gene            613..1155
                     /locus_tag="VKJ77_11285"
     CDS             613..1155
                     /locus_tag="VKJ77_11285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC45896.1"
                     /translation="MSKTSSTTLARGERRRITVTLNGRERTGYCESRDLLSDFVRHEL
                     GATGTHVGCEHGVCGACTVHVDGVAARSCLMLAVQVEGRRVDTVEGLAPDQTLGDLQR
                     AFQRHHALQCGFCTAGILMSCADYLKRVPDPTETQVREMLSGHLCRCTGYTPIVAAVL
                     DVAALRNKNNKSSKKEPEHA"
     gene            1148..>2274
                     /locus_tag="VKJ77_11290"
     CDS             1148..>2274
                     /locus_tag="VKJ77_11290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC45897.1"
                     /translation="MLDLGRTFLQSVERSPNTLAIVDGDVKLTYAQWHGTILKVAGGL
                     RELGLARGDRLLVVLQNRWEMATLHWACQFAGIVMTPLNWRAKPEELDYCVIDAGAKA
                     VVFEPVSADAVHASEAAQKLPRIALDDARGTTSFDALLRSNAGSVSVTTEATADDLSL
                     ILYTSGTTGKAKGVPRRHRHERAAALAHVAQNLYRYGERTLGVMPLYHTMGVRSLLAM
                     ALVDGLFVCVRRWNAPQALESISSFELTCLYLVPTLYHDLLAAPGFADARIASVTKLG
                     FAGAPMSDGLLKRLSAAFKPELFVNHYGSSEVYTCSIDQDATRKPGSAGRAGINTRLR
                     VVKLDAASPADFAAVHEEGQIIADLLGDEAFEGYWNRPDANA"
BASE COUNT          417 a          664 c          763 g          430 t
ORIGIN      
        1 cggtcatctc gtggtgagcg cggccgccac gcaaggcagc gtggaatggc gtgcgtcgtt
       61 gcagaacgaa gtccctttgc tcgcgctcgc gttcccgcac atctcgcatt ttcagatccg
      121 taatcgcggc accgtatgcg ggtcgatcgc tcatgccgac cctagcgcgg agcttccgtt
      181 ggtgctctcg gtgctgggcg gtgacgtcat gctgcgatcg aagaaacgca agcgcgtgct
      241 caaggcgcaa gactttttcc agggcatgtt gatgaccgcg cgggagcccg acgaactggt
      301 tgaaggtgtg cggttcccgt tgaagcgggc cggcgagcgg tacgcgttta ccgaattttc
      361 agcacgccac ggcgacttcg caatggtcgc gtgtgcaacc gtggtcaccg atacatcgat
      421 caggatcgcc gtaggcggtg tggcggaccg gccggtggtc gagaaatggc caaggctgca
      481 cggcgacgac ttgcgtagcg cgctgaacga cttgagctgg aagctcaatg cgcaggacga
      541 cacccatgtc agcgcaatgt atagacgcca tctggtgcgg caactcggat ggcgcgtgat
      601 agaggaggcg aaatgagcaa gacatcatcc accacgcttg cgcggggcga gcgccggcgc
      661 atcaccgtga cgctcaacgg acgggagcgt acgggctatt gcgaatcgcg cgacctgttg
      721 tccgatttcg tgcgtcatga actgggcgcg accggcacgc acgttgggtg tgaacatggc
      781 gtgtgcggtg cgtgcaccgt gcatgtggac ggcgtggcgg cccggtcgtg cctgatgctg
      841 gcggtgcagg tggagggacg ccgtgtggac acggttgaag gtctcgcgcc tgaccagacg
      901 ctaggcgatc tgcaacgggc gttccaacgt catcacgcat tgcagtgcgg cttttgcacg
      961 gcgggcattc tgatgtcgtg cgcggactat ctcaagcggg taccggaccc gacggagacg
     1021 caagtacgcg agatgctgtc gggccatctg tgccgatgta cgggctacac gccgatcgtg
     1081 gcggcggtgc tcgacgtagc ggctttgcgt aacaagaaca acaagagcag caaaaaggag
     1141 ccggaacatg cttgatctcg gccggacctt tttgcaaagc gttgaacgca gccccaacac
     1201 gcttgccatc gtggatggtg acgtcaagct gacttacgca cagtggcatg gcaccatcct
     1261 caaggtagcc ggcggtttgc gcgagctggg tctcgcacgc ggcgaccgct tgctcgtggt
     1321 gctgcaaaac cgctgggaaa tggcgacgct gcattgggcc tgccagtttg cgggcattgt
     1381 catgacgccg ttgaactggc gcgcgaagcc cgaggaactc gactattgcg tgatcgatgc
     1441 aggcgcgaaa gcggtcgtct tcgaaccggt ctccgccgat gcggtccatg caagcgaggc
     1501 ggcgcagaag ctgccgcgta tcgcgctgga cgatgcacgc ggtacgactt cgttcgatgc
     1561 attgctgcgc tcgaacgcag ggagcgtcag cgtcacgaca gaagccacag cggacgacct
     1621 atcgctgatc ctctatacct ccgggacaac gggcaaggcg aagggcgtgc cgcgtcgtca
     1681 ccggcatgag cgtgctgctg cgctcgccca cgtcgcgcag aacctgtatc gctacggcga
     1741 gcgcacgctg ggtgtcatgc cgctgtatca caccatgggc gtgcgctcgc tgctcgccat
     1801 ggcgctggtc gatggcctgt tcgtttgcgt gcggcgctgg aacgcgcccc aagcgctgga
     1861 atcgattagt tcgttcgagc tcacgtgctt gtatctcgtg cccacgctct atcacgactt
     1921 gctggctgca cccggctttg cggacgccag gatagcctcg gtgacgaagc tcggtttcgc
     1981 gggggcacca atgagcgatg gcttgctgaa acgtctgtcc gccgcattca agcctgaact
     2041 gttcgtgaat cactatggct cgtccgaggt gtacacgtgc agcatcgacc aggacgccac
     2101 gcgcaaaccc ggcagcgctg gccgtgcggg catcaacacg cggctgcgcg tggtgaagct
     2161 ggatgctgcc tcgccggccg atttcgcggc tgtgcacgag gaaggtcaga tcattgcaga
     2221 cctgctcggc gacgaagcat tcgaaggtta ctggaatcgt ccggacgcga atgc
//
LOCUS       DATGBK010000806         3126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_241119, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000806 DATGBK010000000
VERSION     DATGBK010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3126
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241119"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1443)
                     /locus_tag="VKJ77_11295"
     CDS             complement(<1..1443)
                     /locus_tag="VKJ77_11295"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HMC45898.1"
                     /translation="MMEKLKDYLNRYFEHAFVLLILLATSALNYFVPHKIAFLNFYFL
                     PIILGAYYLGQKRAMLGAVFCFLMVLGYLLLDPEAFLSENWAQEVQLHLFIWGGFLIL
                     AGAVVGRLHDNLEAEVTGTHQLNVELERSKRELKESNEQLRESNQNLEGRVQERTLEL
                     QQSKTAVENLKAKVESALYSTMDSAVVNLMIEGRLRNEKRQMSVMFVDLVGFTNYSEN
                     IQPENVVADLNRYLQDMEPVMLAYHGHIDKYMGDGIMCEFGAPHEFAMHRLMAATCAV
                     KMQKTLVARDHPWQMRVGIASGAAIAGLIGSRRQTYTAIGDIVNLASRLEKYCTPGRV
                     LIDRYTNEAIQPFFETRKLRDLSTRKDIDLQKEQELDRLYQEILERPDAPELHYRRGQ
                     LHLQMDEPVEALQYFETALQLEPRNDAFKIAYAEAGLNLKEHDNISVKGKRRRVEAFE
                     ILGMKDPLDNRDKIPQALYDRYRHVGEQIKI"
     gene            1715..2302
                     /locus_tag="VKJ77_11300"
     CDS             1715..2302
                     /locus_tag="VKJ77_11300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45899.1"
                     /translation="MTAPQMVDPHDVVMTGENSFIRLSNDGGKTIADRVSHWRVLWSP
                     AGQGHALFIESPLTGKGPRVYTDNAAVARFLQRTIEVLLYKDFASESLPLIDAEFERS
                     GNSLSTVEERIISDADEIILGYWDLMAPFVLTLPPGAMDRPIGVYSTFLPARSAQLSV
                     NSNVATAKVFPQDRFGKQGSSCCLAWSETWTRPRG"
     gene            2372..>3126
                     /locus_tag="VKJ77_11305"
     CDS             2372..>3126
                     /locus_tag="VKJ77_11305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013206666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HMC45900.1"
                     /translation="MHFRRAGAAASAHGQNARLALNSAGVVGFHQLERQRQSACKQPR
                     VAPYMPQISAGAAMNTYSFDTGTEAFERDVLEASQKVPVLVDFWAPWCAPCRALKPIL
                     DKLAGEYQGRFLLAKVNSDEHPQLSARFGVRGIPNVKAFVEGKLADEFTGALPESGVR
                     AFIDRLIPTPGEKLRRTARALVSQGDFDEAERHLRSALEIEPANHGVRLDLVDLLLAK
                     NSHAEADEVFARIPERERDERADGIYSALALWK"
BASE COUNT          593 a          979 c          907 g          647 t
ORIGIN      
        1 tatctttatc tgctcgccga cgtgccggta ccggtcgtat aaagcctgcg gaatcttgtc
       61 gcggttgtcg agcgggtctt tcatgccgag gatctcgaac gcctcgaccc gccggcgttt
      121 gcccttgacg ctgatgttgt cgtgttcctt cagattcaga ccggcttcgg cataggcgat
      181 cttgaacgca tcgtttctcg gctcaagctg caacgccgtc tcgaaatatt gcagcgcctc
      241 gaccggttcg tccatctgca aatgaagctg cccgcgccgg tagtgcaact ccggcgcatc
      301 gggacgttcg agtatctcct gatacaacct gtccaactcc tgctccttct gcaggtcaat
      361 atccttgcgg gtcgacaagt cgcgcaactt gcgtgtctca aaaaacggtt ggattgcctc
      421 gttcgtataa cggtctatca agacgcgccc cggcgtgcag tatttttcca gccgcgacgc
      481 caagttcacg atatcgccga tggcggtgta agtctggcgg cgcgagccga tcaggcccgc
      541 aatggcggcg cccgaagcga tgccaacgcg catctgccac ggatgatcgc gcgcgactag
      601 tgtcttctgc attttcacgg cgcaggtggc ggccatcagg cgatgcatgg cgaattcgtg
      661 cggcgcgccg aattcgcaca taattccgtc acccatatat ttatcaatat gcccgtggta
      721 ggcgagcatg acgggctcca tgtcctgcaa ataacggttc aggtcggcca ccacgttttc
      781 cggctggatg ttttcagagt agttggtgaa gccgaccagg tcaacgaaca tcacgctcat
      841 ttggcgcttc tcgttccgga gccggccctc gatcatcagg ttgaccaccg ccgagtccat
      901 cgtgctgtac agcgcgcttt ccaccttcgc cttcaggttt tcgactgccg tcttggattg
      961 ctgcaattcc agcgtgcgct cctgtacccg cccctccagg ttctggttgc tttcgcgcaa
     1021 ctgctcgttg ctttctttca attcccgctt gctccgctcc agttcgacgt tcagttgatg
     1081 cgtgccggtc acctcggctt ccaggttgtc atgcaagcga ccgactaccg ccccggcgag
     1141 aatgaggaag ccgccccaga tgaacagatg caactgcact tcctgcgccc agttttccga
     1201 gaggaaggcc tccggatcca gcagcaggta tcccagcacc atcaggaaac agaacaccgc
     1261 acccagcatc gcgcgtttct gcccgagata ataggcaccg agaatgatgg gcaggaaata
     1321 aaaattcagg aaggcgatct tgtgcgggac aaaataattc agcgcactgg tcgcaagcag
     1381 gatgagcagc acgaacgcat gctcgaaata gcggttcagg taatccttca gtttttccat
     1441 catgtcggca accccatctt cggcaggtgg tagttcagtt ccaatcgtct attccccgag
     1501 tcttcattgt gccatcagca tttccaacag cccgcccacc gtctggccct gcttcagcgc
     1561 tgccgagcat tgtgccggga agcatgttgc gcctgcgccc ggccgattgc aatgccggtt
     1621 acgtcacgga tgggtgctat catttcctgc ctcgtcgttt tccgaacata cgcatttccg
     1681 gcacaccgaa tgtccgcaga tcaggagcaa gcccatgacc gccccccaga tggttgaccc
     1741 gcacgatgtc gtgatgaccg gggaaaactc gttcatccgt ctctccaacg atggtggcaa
     1801 gaccatcgca gaccgcgtca gccactggcg cgtgctgtgg tcgcccgccg gacagggaca
     1861 cgcgttgttc atcgaaagcc cgctcaccgg caagggtccg cgggtctaca ccgacaacgc
     1921 ggctgtcgcg cgctttctcc aacgtacgat cgaggttctg ctgtacaagg acttcgcctc
     1981 cgagtcgttg ccgctgatcg acgccgaatt cgagcgcagc ggcaattcgc tcagcacggt
     2041 cgaagagcgc atcatctccg acgcggacga gatcatcctg ggctactggg atctgatggc
     2101 gccgttcgtg ctcacgctgc cgccgggagc gatggaccga ccgatcggcg tctacagtac
     2161 cttcctgccc gcgcgcagcg cgcagctttc ggtaaatagc aacgtcgcca cggcgaaggt
     2221 gttcccgcag gaccgcttcg gcaagcaggg atctagctgt tgcctggcgt ggtcggagac
     2281 gtggacgcga ccaaggggct gaacccgacc tgcgccgggc cggacaaagt ccggggcggg
     2341 tatccttcaa gccggcaacg ataagcggca cttgcatttc cgccgcgccg gcgccgccgc
     2401 gagcgcccat ggtcagaatg cgcgactagc cctcaattca gccggtgtag ttggctttca
     2461 tcagctggaa cgccagcgcc agagcgcttg caaacagccg cgcgtggccc catatatgcc
     2521 acaaatatct gctggagccg ccatgaacac ttattcgttt gataccggaa ccgaggcttt
     2581 cgagcgcgac gtgctggaag catcgcagaa agtgcctgtg ctggtcgatt tctgggcgcc
     2641 gtggtgtgcc ccgtgccggg cgctgaaacc catcctggat aagctcgccg gcgaatacca
     2701 gggcagattc ctgctggcca aggtcaattc cgacgagcat ccgcagttgt ccgcgcgttt
     2761 cggcgtgcgc ggcatcccca acgtcaaagc ctttgtcgaa ggcaagctgg cggacgaatt
     2821 taccggcgcg ctgccggaga gcggcgtgcg cgcgttcatc gaccgcctga tcccgacgcc
     2881 gggcgagaag ctgcgccgca cagcgcgcgc gctcgtgtcc cagggcgatt tcgacgaggc
     2941 cgagcgccat ctgcgcagcg ccctcgaaat cgagccggcc aaccacgggg tgcggctgga
     3001 tctggtcgat ttgttgctgg cgaagaacag ccacgccgaa gcggatgagg tgtttgcgcg
     3061 gattccggaa cgcgagcgcg acgagcgcgc ggacggcatc tattccgcgc ttgcgttgtg
     3121 gaagaa
//
LOCUS       DATGBK010000807         1517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56235, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000807 DATGBK010000000
VERSION     DATGBK010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56235"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..881
                     /locus_tag="VKJ77_11310"
     CDS             <1..881
                     /locus_tag="VKJ77_11310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45901.1"
                     /translation="YQKAQDNILANYRFLVDNDENRPEFNMARATWMVNLGVPWTLLY
                     LGELGRAHQEFDRAIAMYATNGNQYGADTLTLYRCWVQFHALDFDAMLESCSQILAET
                     LAGTAVHRSTLPAEQRLAILLKGLACLGLGDTCTARVHLLDVMQRMDNEPVIFDWYWR
                     LALEWGLASLALMQGDLDEAMRHAARLVKLVTGTEEHTWQGLSWEIQARVALRFGAVA
                     DAVRHVEKALVATQDFQTPLADWRIHRTASEAYRLSGDAQTAERHAELAASKKAALAA
                     SLPTGHRMRATFDAGN"
     gene            complement(1053..>1517)
                     /locus_tag="VKJ77_11315"
     CDS             complement(1053..>1517)
                     /locus_tag="VKJ77_11315"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HMC45902.1"
                     /translation="RRGEAVEGLVNLLKLAQSVGLHQTLVDCSVRVAELIEAIVQRRI
                     ASVHDTGELLPYARLLLVHRQRGTRHAVEPFPVRRPNAAAGVSERERLIVSLMGQGLS
                     NKQIAAELCIAPETVKSHAKHLYTKLSVRNRTEAVTLATRLGLIHMPMIFSA"
BASE COUNT          282 a          482 c          475 g          278 t
ORIGIN      
        1 agtatcaaaa ggcccaggac aacatcctcg cgaactaccg gttcctcgtc gacaacgatg
       61 agaaccggcc cgagttcaac atggcgcgcg ccacatggat ggtcaatctc ggtgtgccct
      121 ggacgctgct atatctgggc gagctcgggc gcgcacatca ggagttcgac cgggcgattg
      181 ccatgtacgc taccaacggc aatcaatacg gcgccgatac gctcacgctg tatcgctgct
      241 gggtgcaatt ccatgcactg gacttcgacg ccatgctcga gtcctgcagc cagattctcg
      301 cggaaacctt ggccgggaca gcggtgcacc gctcgaccct tcccgcagag caacggctcg
      361 ccatcctcct gaagggactg gcctgtcttg gcctgggcga cacctgcacg gcgcgcgtgc
      421 atttgctcga cgtcatgcag cgcatggata acgagccggt gattttcgac tggtactggc
      481 ggctcgcgct tgaatgggga ctcgcaagcc ttgcgctgat gcagggtgat ctcgacgaag
      541 cgatgaggca tgccgcgcgt ctggtcaagc tggtgaccgg cacggaggag cacacctggc
      601 agggtttgtc gtgggagatt caggctcgcg tcgcgcttcg ctttggcgcg gtggcggacg
      661 ccgtgcgtca tgtcgaaaaa gcgctcgttg ccacccagga tttccagact ccgctcgcgg
      721 actggcgcat ccatcgtacg gcgagcgagg cctaccgctt gagcggggat gcgcaaacgg
      781 ctgaacgtca cgccgaactg gcggcttcca aaaaagcggc gctcgcggca agtttgccca
      841 ccgggcatcg tatgcgcgcc acgttcgacg ccgggaatta gccctcgatt ggctccgcga
      901 ggccccggcc gatccgacgc ctgcctgaac cgacgttcaa gttcgaggac ggtctcgaag
      961 cgcatcgtac ggaccagcag ccagccgcgt cagacctgca gggtgcgcgc cgcgaagtgg
     1021 ttgctgttgt cgtgaaatcc caaaacccgc gttcaagccg aaaaaatcat cggcatgtgg
     1081 atcagaccaa ggcgcgtggc cagcgtgacc gcctcggtcc ggtttctgac tgacagcttc
     1141 gtataaagat gctttgcgtg cgatttcacg gtctcaggtg cgatgcacag ctcggccgcg
     1201 atctgcttgt tggacagacc ttgccccatc aggctgacga tcaggcgctc gcgctcgctg
     1261 acgcccgcag cggcgttcgg acgtcgcaca gggaatggct caacagcgtg gcgcgtgccg
     1321 cgttgccgat gcaccagcag cagccgtgcg tagggcagca gttcgcccgt atcgtgcacg
     1381 gacgcgatcc gccgttgcac gatcgcctcg atcagctccg cgacgcgcac gctgcaatcg
     1441 acgagcgttt gatgcagacc gaccgattgc gctagcttga gcagattgac cagcccctcc
     1501 acggcttcac cgcgtcg
//
LOCUS       DATGBK010000808         1823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218186, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000808 DATGBK010000000
VERSION     DATGBK010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218186"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..570
                     /locus_tag="VKJ77_11320"
     CDS             <1..570
                     /locus_tag="VKJ77_11320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011882039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC45903.1"
                     /translation="MQGIVPEQTGHDMPTSTLYGVFRAADGDLVIAAQVDDAWKRFAV
                     LVEAHGGPAGFGTDTRFHTSAGRNANRLEILSVVKPWVAGRPVAQVLELLDRIDVSCA
                     KVQRIDEVLADPQIIARGMVVEQEHPRYGKLRLPNLPFRFSDCDTTIREVAPDLGQHN
                     AEVAHSLGFGAAEIDAMQTDGVLYSKVRP"
     gene            570..1403
                     /gene="aroE"
                     /locus_tag="VKJ77_11325"
     CDS             570..1403
                     /gene="aroE"
                     /locus_tag="VKJ77_11325"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006752565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HMC45904.1"
                     /translation="MTDQYAVIGNPIGHTKSPLIHGLFAQETQQDMSYTAVEGPLEPH
                     DAFAATVRAFIAAGGKGMNVTAPFKLKAFAMADERSERAELAGAANALSFKDGRIVAE
                     NFDGVGLVRDIEVNLSQPMAGKRVLVLGAGGAVRGAWLPFLAARPAELVVANRDVPKV
                     RALVAQVAASGSLFACGYGDLEAMGRFDLVVNATSASLTGELPPVPPSVFSPEGTAYE
                     LAYGKRLTPFLRLARNAGVAGVADGVGMLVEQAAEAFAWWRGVRPQTRAVIDLLTVPL
                     D"
     gene            complement(1477..>1823)
                     /locus_tag="VKJ77_11330"
     CDS             complement(1477..>1823)
                     /locus_tag="VKJ77_11330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011355535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45905.1"
                     /translation="EPYALYRCFETHMSEALKGMVVAGHGIGWLPESCITKELSDGSL
                     VRASSDAWTTELEIRLYRSGKQRGRAAEQLWSYVEKQTVKTDVNGSSASRELDRQEFD
                     PAEITARSSASG"
BASE COUNT          310 a          549 c          605 g          359 t
ORIGIN      
        1 atgcaaggca tcgtgcccga gcagaccggt cacgacatgc ctacgtcgac gctctatggc
       61 gtgttccgtg ccgccgatgg cgacctcgtg atcgcagcgc aggtcgatga cgcctggaag
      121 cgtttcgccg tgctcgtcga ggcgcatggc ggcccggcgg gcttcggcac cgacacacgc
      181 tttcacacgt ccgcgggccg caatgccaac cggctggaga ttctgtccgt ggtgaagccc
      241 tgggtggccg gccggccggt cgcgcaggtg ctggaactgc tcgatcgtat cgacgtgtct
      301 tgcgcgaagg tgcagcgcat cgacgaagtg cttgccgatc cgcagatcat tgcgcgaggc
      361 atggtggtcg agcaggagca cccgcgctac ggcaagttgc gtctgccgaa cctgccgttc
      421 cgattctccg attgcgacac gacgattcgc gaggttgcgc ccgatctcgg tcagcacaac
      481 gcggaagtcg cgcattcgct gggcttcggc gctgccgaga tcgacgcgat gcaaaccgat
      541 ggtgtgctgt attcgaaggt gaggccatga tgactgacca gtacgcagtg atcggcaacc
      601 cgatcggcca tacgaaatct ccgttgatcc acggtctctt tgcgcaagaa acgcagcagg
      661 acatgtccta tacggccgtc gagggtccgc tggagccgca cgacgccttt gccgcgactg
      721 tgcgcgcgtt catcgcggcg ggcggcaaag gcatgaacgt aaccgcgccg ttcaagctga
      781 aggcgttcgc gatggccgat gaacgcagtg agcgcgcgga actggctggc gctgccaacg
      841 cgctgagctt taaggacggg cggatcgtgg ccgagaactt cgatggcgtc ggcttggtgc
      901 gtgacattga agtcaacctg agccagccga tggccggcaa gcgcgtgctg gtcctcggcg
      961 cgggtggtgc ggtgcggggt gcatggctgc cgttcctggc ggcgcggccc gctgaactcg
     1021 tcgttgcgaa ccgggacgtc ccgaaggtca gggcgctggt cgcacaggtc gcggcgagcg
     1081 gttcattgtt cgcctgtggc tatggtgatc ttgaagcaat gggacgcttc gaccttgtgg
     1141 tcaacgcgac gtcggccagt ctcactggcg agttaccgcc ggttccgccg agtgtcttca
     1201 gcccagaggg taccgcctat gagctcgcct acggcaagcg gctgacgcca ttcttgcggc
     1261 tcgcgcgcaa tgcgggcgtg gcgggtgtcg cggacggcgt cggcatgctg gtggaacagg
     1321 cggcagaagc tttcgcctgg tggcgtggcg tgcgacccca gacgcgcgcc gtgatcgacc
     1381 tgctgacggt tccgctcgat tgaacgcatc aggaggccgc ggatgacact tcggcctgat
     1441 cgttcaacag ggcgcgaatc gcgctttgca aacgcgctat ccagaagcag aggatcgcgc
     1501 tgtaatctcc gcgggatcga attcttgtct atccagttcc cggctcgccg atgacccatt
     1561 gacgtccgtt ttaactgtct gtttttcaac gtaggaccag agctgttcgg cggctcggcc
     1621 tctctgcttg ccggaacggt acagacgtat ttccagttcg gtagtccagg cgtctgagct
     1681 tgccctgaca agcgagccgt cgctcaattc cttggtgatg cagctctccg gcagccagcc
     1741 gataccgtga cctgccacaa ccatgccttt caacgcttcg gacatatgag tctcgaagca
     1801 tcggtacaga gcgtacggtt cgg
//
LOCUS       DATGBK010000809         1636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_79081, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000809 DATGBK010000000
VERSION     DATGBK010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79081"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..704)
                     /gene="serC"
                     /locus_tag="VKJ77_11335"
     CDS             complement(<1..704)
                     /gene="serC"
                     /locus_tag="VKJ77_11335"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HMC45906.1"
                     /translation="MTKTMNFSGGPGALPASVLRETSVAIDTLPETGLSVLGMSHRSD
                     WFRGVLDEAERNLRVLLDIPANYHVLFMQGGSSLQFSMLPMNFLRSSGKHAEYIVSGY
                     WSAKAPVEARHEGTTRVVWDGSAEGYRRLPGPEELHLAPDAAYLHYVSNETVEGLEFT
                     DIPGLREVPLVCDMSSNLLAAPLDIDRYAMIYAHAQKNLGPAGVTVVILRDEFAQRAT
                     HALPTFLDYRTHIQARS"
     gene            complement(705..>1636)
                     /locus_tag="VKJ77_11340"
     CDS             complement(705..>1636)
                     /locus_tag="VKJ77_11340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45907.1"
                     /translation="LILCAGKSTGNVPFEALLPGVRNRRIKYAIDYAADDEDAQLPAF
                     DLVFNAIGDPDIAAPLGSRLARFEAQCSRPLLNPNSAITPTSRHRLPTLLDGLDDVQT
                     APCVRYEGQSFGPHASLRSLLADHGVTFPLLARPVAAHGGDGLVLCDSIEALERRLST
                     QEGAQYLTAFRDCQSADGFYRKYRVIYVDRQPLPYHLVISPHWIAHYFSAEMESHAWK
                     LAEELLFLQDPRAALGERAMDAIAAIGQRLDLDYGGIDFTLLPDGQVVVFEANATMLA
                     HYERDSGVLAHKNQHVQHIVDAFEQMLTQRTAG"
BASE COUNT          318 a          496 c          516 g          306 t
ORIGIN      
        1 gaacgcgctt gaatgtgcgt ccgataatca aggaaggttg gtaacgcatg cgttgcccgt
       61 tgagcgaatt catcgcgcag gatcaccacg gtgacaccgg ccggcccgag gtttttctgc
      121 gcgtgcgcgt agatcatcgc gtaacggtcg atatcgagtg gcgcagccag cagattggag
      181 gacatgtcgc agaccagcgg cacttcgcgc agccctggaa tgtctgtaaa ttcgagcccc
      241 tcgaccgttt cgttggacac gtaatgcagg taggccgcgt ccggcgcgag gtgaagttcc
      301 tcgggcccag gcaagcggcg atacccctcc gcgctgccgt cccacaccac acgcgttgtt
      361 ccttcgtgcc gcgcttcgac cggcgccttg gcgctccagt aacccgacac aatgtactcg
      421 gcatgcttgc cgctgctgcg caggaagttc atcggcagca tggagaactg caggctgctg
      481 ccgccctgca tgaacagcac gtggtagttg gcggggatat cgagcagcac gcgcaggttg
      541 cgctcggctt catcgagtac tccgcggaac cagtcggatc gatggctcat tcccagcacc
      601 gacagacccg tctcgggcaa cgtgtcgata gcaacgctcg tttcgcgcag caccgacgcc
      661 ggtaacgcac ccggtccacc cgagaagttc atggtcttgg tcattcagcc cgccgtccgt
      721 tgcgtcagca tttgctcgaa cgcatcgacg atatgttgta catgttggtt cttgtgagcg
      781 agcacgccgc tatcgcgctc gtagtgagcg agcatggtcg cgttggcttc gaacacgacg
      841 acctggccgt caggcagaag cgtgaaatcg atgccgccgt agtccagatc gagccgctgg
      901 ccgatagccg cgatggcgtc cattgcgcgc tcgccgagtg ccgcacgcgg gtcttgcagg
      961 aagagcagtt cctcggcgag cttccacgcg tggctttcca tttcggcgga aaaataatgc
     1021 gcgatccagt gcggcgagat cacaagatga taaggaagcg gctgccggtc gacgtagatc
     1081 acgcggtact tgcggtagaa accatcggcc gactggcaat cgcggaacgc cgtcaggtac
     1141 tgggcgcctt cttgcgtcga taaccggcgc tcaagtgctt cgatgctgtc gcacagaacc
     1201 aggccgtcgc caccgtgcgc ggcaacgggc cgcgccagta gcggaaacgt aacgccgtga
     1261 tcggcgagca gcgagcgaag cgaagcgtgc ggaccaaagc tttgaccttc gtaccgcacg
     1321 cacggcgcgg tctgtacgtc atcaaggcca tcgagcagcg tgggcagcct atgccgcgag
     1381 gtcggggtga ttgccgagtt tgggttgagc aacgggcgcg aacactgcgc ctcgaaacgc
     1441 gcgagcctgc tcccgagcgg tgctgcaata tccggatcgc cgatcgcgtt gaacacgaga
     1501 tcgaaggcgg ggagttgagc gtcttcgtcg tcggcagcgt agtcgattgc atacttgata
     1561 cgccggttcc ttacgcccgg caacaaagcc tcgaacggca cgttgccagt gcttttaccc
     1621 gcgcacagga tcagga
//
LOCUS       DATGBK010000810         1563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148292, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000810 DATGBK010000000
VERSION     DATGBK010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148292"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..1482)
                     /locus_tag="VKJ77_11345"
     CDS             complement(16..1482)
                     /locus_tag="VKJ77_11345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HMC45908.1"
                     /translation="MPHSFKPTPEQHAVVDAVLGGGDLKIKAYAGAGKTSTLRLIADH
                     LPGKRGSYLAFNKEIAQHARRGFPPNVSARTVHSLAYASVAPALTARVNLPTEPPHEL
                     AARYGIGAIQVPTITGKTVEVTPFELGRMVADGLGRFCRSAQLGPEPSHIPVDEKVHE
                     TAADWLRESLLPCVVRLWHESTDPRGRSAIAPDVYLKVWAQTKPRIDADFILFDEAQD
                     SDGVMLSVLGLQRHAQIIYVGDPYQQIYEWRGAVNAMAQIDAPECALTESFRFGPTFA
                     ALASRILSLLGERTPIRGQDGIGSIMVEDPSVSPPVDAILCRKNVTAIWQLAAGIEAG
                     HKPAIRMSPTEIVAFAEGADQLLAGKRAFRPAAFSLFETWKDAQSFAQSAVGRDLLPI
                     VRIVDECGTDYLRVLARQVTPEADADYVISTVHRAKGLQWKRVKVANDFRFKTVDGRL
                     TLDEDEMRLLYVAVTRAQHVLDISELREELLRLFNSRR"
BASE COUNT          309 a          477 c          487 g          290 t
ORIGIN      
        1 aacaggcctg tgcggtcacc ggcgcgagtt gaacaaccgt aaaagttcct cgcgcagttc
       61 ggagatgtcc agcacatgct gcgcgcgcgt cacggccacg taaagcaggc gcatctcgtc
      121 ctcgtctaac gtcaggcgcc cgtcaacggt cttgaagcga aaatcgttgg cgaccttcac
      181 ccgtttccat tgcagtccct tggcgcggtg cacggtcgag atcacgtagt cggcgtctgc
      241 ctcgggcgta acttgtcgcg ccaacacgcg cagatagtcg gtgccacact cgtcgacgat
      301 tcgcacgatc ggtagtaagt cgcgccccac cgcgctctgg gcgaacgatt gagcatcctt
      361 ccaggtttcg aacagcgaaa atgccgccgg ccggaaagca cgcttgccgg ccagcaactg
      421 atcagcgcct tcagcgaacg cgacgatctc ggtcggactc atacggattg ccggcttgtg
      481 acccgcttcg atgcccgcgg ccaattgcca gatcgccgtc acattcttgc gacacaaaat
      541 ggcatcgacg ggcggtgaga cactcggatc ctccaccatg atcgacccga tgccatcctg
      601 gccgcgaatg ggcgtgcgct cgccaagcag cgacagaata cgactagcga gtgccgcaaa
      661 cgtaggtccg aagcggaagg attcggttag cgcacactcg ggcgcatcga tctgagccat
      721 tgcattgacc gcaccgcgcc attcatagat ttgctggtaa gggtcgccga cgtagatgat
      781 ctgcgcgtgg cgctggaggc caagcaccga gagcatgacg ccatcgctgt cctgcgcctc
      841 gtcgaacagg atgaaatccg catcgatacg cggttttgtc tgcgcccaga cttttagata
      901 gacgtccggc gcaatggcgc tacggccgcg tggatcagtg ctttcatgcc acaggcgcac
      961 cacgcaggga agcaacgatt cgcgcagcca gtcggccgcc gtttcatgaa ccttttcgtc
     1021 gacagggatg tgggaaggct cgggtcccag ctgcgccgag cggcaaaacc tgcccaggcc
     1081 gtcggcgacc attcgaccaa gttcgaacgg cgtgacttcg acggttttgc cggtgatcgt
     1141 gggcacctgt atcgctccga tcccatagcg agcagccaat tcgtgcggag gttcagtcgg
     1201 gagattcacg cgcgcggtca gggcgggcgc tacggatgca tacgcgagcg aatgcaccgt
     1261 gcgcgcgctg acgttcggcg gaaagccgcg gcgagcgtgc tgggcgattt ccttgttgaa
     1321 ggcgagatag ctgccgcgct tacccgggag atgatcggca attagtcgta gcgtcgaagt
     1381 ctttcccgcg ccggcatacg ccttgatctt caggtcgcct ccgccaagaa ccgcatctac
     1441 gaccgcgtgc tgctcggggg taggcttaaa cgaatggggc atgggatgtg aggctgagcg
     1501 aagatgcccg tagtgtgccg gagaatcgcc tatgggcaag ctgcggcgcg gcaaccgatc
     1561 gcc
//
LOCUS       DATGBK010000811         2497 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_9452, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000811 DATGBK010000000
VERSION     DATGBK010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9452"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..164
                     /locus_tag="VKJ77_11350"
     CDS             <1..164
                     /locus_tag="VKJ77_11350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007749277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HMC45909.1"
                     /translation="AMYLAKHCPSAMLFVPSRGGVSHNPQEATDDDHLVLGARALAHC
                     LVHLCNEAP"
     gene            190..882
                     /locus_tag="VKJ77_11355"
     CDS             190..882
                     /locus_tag="VKJ77_11355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007749276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea carboxylase-associated family protein"
                     /protein_id="HMC45910.1"
                     /translation="MSTPHVEHHHDNSHALGENATLREPISADGTPEIGKTYTVPARN
                     GRAVKVQSGQTIRITNTHGTQVCDTWIFNATHLDEFLSFEHARASLDKVIPQAGDPLM
                     TNHRRPIAELVTDTSPGVHDTLMAACDLYRYKNLGVAGYHDNCADNLRLALKAIGLRA
                     REVPQPFNLWMNIPIKPDYSIEWLAPVSKAGDYVEIKALMDCVVVMSACPQDIIPINA
                     LNPLEVEFTVLA"
     gene            1011..1553
                     /locus_tag="VKJ77_11360"
     CDS             1011..1553
                     /locus_tag="VKJ77_11360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009915883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HMC45911.1"
                     /translation="MRLKHARMVKQLTLKALAAEAGCSESMLSKLEGGHAQPSLATLH
                     KIALALSTNVGALVSGPDINTSPVQRANERPTTEFPSAGKRLSIMLERVIVPAAGQLL
                     QSDIHVIEPLASSDEQISHAGEELGYVIEGQFELTLGDECYLLHAGDTFYFPSTVPHS
                     YRNPGKTVARVLWTNTPPTF"
     gene            1564..2373
                     /locus_tag="VKJ77_11365"
     CDS             1564..2373
                     /locus_tag="VKJ77_11365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006028115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HMC45912.1"
                     /translation="MPGTDRSQMALPRFSGIPTFMRVPYCTNINELDIVLAGVPFDGG
                     VTARPGARFGPREIRNMSSMTRAIHHVTRFNPFDVCRVGDIGDVPFTDLYHLERSHED
                     IRRFFEPVFAAGKIPLSAGGDHSITYPIFQAMAPKQPIGMVHIDAHTDTWDSFKGSKF
                     THGAPFRRAVEAGLLDPKRTIQIGIRGAQNSDEGWRYSLESGMRVVFIEEVEARGVGA
                     IIDEARRVVGDGPTYLSLDVDGLDPVYTPGTGTPEIGGLTTRETLIDLANT"
BASE COUNT          542 a          770 c          712 g          473 t
ORIGIN      
        1 acgccatgta tctcgcgaaa cattgcccga gcgcgatgct gtttgtcccg agtcgcggcg
       61 gcgtcagcca caacccgcag gaagccaccg acgacgatca cctcgtactg ggcgcacgcg
      121 cgctagcgca ttgcctggtt catctctgta acgaagcacc ttgaaaccga tacgactgaa
      181 ggagtcacca tgagcacgcc gcacgttgaa catcatcacg acaacagcca tgcactcggc
      241 gagaacgcca cgctgcgtga acccatttcc gccgatggca ccccggagat cggcaagacc
      301 tacacggtgc cagcgcgcaa tggccgcgca gtaaaggtgc agtcgggcca gacgatccgc
      361 atcacgaaca cgcacggcac ccaggtctgc gatacgtgga tcttcaacgc cactcacctc
      421 gacgaattcc tgtcgttcga acatgcccgt gcatcgcttg acaaggtcat tccgcaagcc
      481 ggcgatccgc tgatgaccaa tcatcgccgg ccgattgccg agctggtcac ggacacctcc
      541 ccgggcgtgc acgacacact gatggccgca tgcgatctgt atcgatacaa gaacctcggc
      601 gtggccggtt atcacgacaa ctgcgccgac aacctgcgac tcgcactgaa agccatcggc
      661 ctgcgcgccc gcgaagtacc gcaacccttc aacctgtgga tgaacattcc gatcaagccg
      721 gactattcca ttgaatggct cgcgccggta tcgaaggccg gtgattacgt ggagatcaag
      781 gcgctcatgg attgcgttgt cgtcatgtcc gcgtgcccgc aggatattat tccgatcaac
      841 gcgttgaatc cgctggaagt cgagttcacg gtgctcgcgt agatccctct acttttagga
      901 agcgctttcc ggtggccacg aaaaaaacga cagtacgcaa acctgcgaac ccggaccgag
      961 ccataagcaa ggcgcccgag gtccagctcg acccggccgc tacactcggc gtgcgtctga
     1021 aacacgcgcg aatggtgaag caattgacgc tcaaagcgct cgcagcggaa gcaggttgct
     1081 cggaaagcat gttgtccaaa ctcgagggcg gccacgcgca gccctcgctc gcgacgctgc
     1141 acaagatcgc gctggcgttg tcgaccaacg tgggtgcgct cgtctcggga ccggacatca
     1201 atacctcgcc cgtgcagcgc gcgaacgagc gccccacgac cgagtttcct tctgccggca
     1261 agcgcctttc gatcatgctc gaacgggtga tcgtcccggc tgcgggacaa ctgctgcaaa
     1321 gcgatattca cgtgatcgaa ccgcttgcaa gcagcgacga gcagatcagc cacgccgggg
     1381 aagaactggg ttatgtgatc gaaggtcagt tcgaactgac cttgggcgat gaatgttatc
     1441 tgttgcatgc gggtgacacc ttctatttcc ccagcactgt tccgcacagt tatcgcaacc
     1501 ctggcaagac cgttgcacgc gtgctgtgga ccaatactcc gcctaccttc tgacgagaac
     1561 atcatgcccg gtaccgatcg aagccagatg gcgttacccc gtttcagtgg catccctacc
     1621 ttcatgcgcg tgccgtactg cacgaatatc aatgaactcg atatcgtgct ggccggcgtg
     1681 ccgttcgacg gtggcgtcac ggcccgtccg ggtgcgcgat ttggcccgcg cgaaatccgc
     1741 aacatgtcga gcatgactcg cgcgatccat catgtgacgc gttttaatcc cttcgatgta
     1801 tgccgcgtgg gcgacatagg cgatgtcccg ttcactgatc tctatcatct cgaacgctcg
     1861 cacgaggaca tccggcgctt cttcgaaccc gtgtttgcgg ccggcaagat accgttgagc
     1921 gcgggcggcg atcattcaat aacgtacccg atcttccagg cgatggcgcc gaagcaacct
     1981 atcggcatgg tgcatatcga tgcccacacc gacacatggg atagtttcaa agggtcgaaa
     2041 ttcacgcacg gcgcaccgtt tcgccgtgcg gtggaagcgg gcttgctgga cccgaagcga
     2101 accatccaga tcggtattcg cggcgcacag aattccgacg aaggctggcg ttattcgctc
     2161 gaaagcggca tgcgtgtggt gtttatcgaa gaggttgagg cgcggggtgt aggcgcgatc
     2221 atcgatgaag cgcgtagggt cgtgggcgat ggcccgacgt atctttcact cgatgtagac
     2281 ggcctcgatc cggtctacac gccgggtacg ggcacgcctg agataggcgg actgacgacg
     2341 cgtgaaacgc tgattgattt ggcgaacact tagccgaaac ctgaaagatg accccgcgct
     2401 atccgcggac aaccaaccgc tgaactgcca aggcttttac tcgaagcgcc gcgctagcag
     2461 acacaggatt tcatacatta gcgtggcggc aacgagt
//
LOCUS       DATGBK010000812         1624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148360, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000812 DATGBK010000000
VERSION     DATGBK010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148360"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..878
                     /locus_tag="VKJ77_11370"
     CDS             <1..878
                     /locus_tag="VKJ77_11370"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC45913.1"
                     /translation="TPLELHDTELQNGLNGHWYQLRERAIQWVDGRVVRMEIATDVTD
                     RMNMEALNNKQLERLEQTSRLITMGEMASSLAHELNQPLSAIANYNMGCVNRLQANDY
                     RPEELLAAMQKASAQAERAGKIIRRVREFVRKSEPNRSAAQVADIIEEAVGFAEIEAR
                     KAGVRISVSVPSDLPAAYADKIMIEQVVLNLVKNGIEAMHDTPRRERELAISARANGK
                     DFIDVKVADRGHGVLVGQTEKLFAPFYTTKPEGMGMGLNICRSIIEFHHGRLWAIANS
                     GGGSVFSFTLPVNPR"
     gene            875..1480
                     /locus_tag="VKJ77_11375"
     CDS             875..1480
                     /locus_tag="VKJ77_11375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012417330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC45914.1"
                     /translation="MTEPRVHIVDDDEAMRDSLKWLLESRGLKVELYPSAEAFLHVFD
                     TTFCGCLVLDVRMPGMNGLDLHQELQACASTLPVIFITGHGDVPMAVSALKKGAADFI
                     EKPFNDQDMLRLIESCMKQDRAAAVKRAENAFVAQRLDSLTQREREVLGLIVGGKLNK
                     QIADDLGISIKTVEVHRSRVMDKMGAESVAELVQLVLKAQA"
BASE COUNT          348 a          493 c          518 g          265 t
ORIGIN      
        1 aaaccccgct cgagctgcat gataccgaat tgcagaacgg cctcaacggc cactggtacc
       61 agttgcgcga gcgagccatc cagtgggtcg acggccgcgt ggtacgcatg gagatcgcca
      121 ctgacgtcac ggaccgcatg aacatggagg cgctgaataa caagcagctg gagcggctgg
      181 aacaaacctc gcgcctgatc accatgggcg agatggcatc cagcctggcg cacgagctga
      241 accagccgct gtcggcgatc gcaaactaca atatgggttg cgtcaaccgc ctgcaggcga
      301 acgactatcg acctgaagaa ctgctcgccg caatgcagaa agcgagtgcg caggcggaac
      361 gcgccggcaa gatcatccgc cgcgtccgcg agttcgtcag gaagagcgag cccaatcgga
      421 gcgcggcgca ggtcgccgac atcatcgagg aggccgtcgg cttcgccgaa atcgaggcgc
      481 gcaaggcggg cgtgcgcatc agcgtcagcg tcccgtccga cctgcccgcg gcctatgccg
      541 acaaaatcat gatcgagcag gtggtgctca acctggtgaa gaacggcatc gaggccatgc
      601 acgacacgcc gcgccgcgaa cgcgaactcg caatcagcgc gcgcgccaac ggcaaggatt
      661 tcatcgacgt caaggtagca gaccgcggcc acggcgtgct ggtggggcag acggaaaagc
      721 tgttcgcgcc tttttacacc accaagccgg aaggcatggg catgggcctc aacatctgcc
      781 gctcaattat cgagttccac cacgggcgcc tgtgggcgat agccaattcc ggcggcggca
      841 gcgtgttcag cttcaccctt cccgtgaatc cgcgatgacc gaaccgaggg tccatatcgt
      901 cgatgacgac gaggcgatgc gcgattcgct caagtggctg ctggaatcgc gcggactcaa
      961 ggtcgagttg tacccctcgg cagaggcgtt cctgcacgtc ttcgacacca ccttttgcgg
     1021 ctgtctggtg ctggacgtgc gcatgcccgg tatgaatgga ttggatctgc accaggaact
     1081 gcaggcgtgc gcctcgaccc tgcccgtgat tttcatcacc ggccacggcg acgtgcccat
     1141 ggcggtgtcg gcactgaaaa aaggcgccgc cgatttcatc gagaaaccgt tcaacgacca
     1201 ggacatgctg cggttgatcg agtcgtgcat gaagcaggat cgcgccgccg ctgtcaagcg
     1261 cgcggaaaac gcgtttgtgg cgcagcggct ggatagtttg acgcagcgcg agcgtgaagt
     1321 gctcggcctg atcgtcggcg gcaagctgaa caaacagatt gccgacgatc tgggcatcag
     1381 catcaagacg gtggaagttc accgctcgcg ggtaatggat aaaatgggcg ccgaatcggt
     1441 cgccgaattg gtgcagctcg tgctgaaagc ccaggcatag gcaggaagct ccgagcgcaa
     1501 tgaaaagtga aggacctcag aaatacgttc ggatctcttg cccgattcgg ccgtgcccgc
     1561 cgtgcccgcc gtgggcgcgg gacgcgccag gcttcctccg caacgagctg gaacacggcc
     1621 tgtt
//
LOCUS       DATGBK010000813         1658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_241209, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000813 DATGBK010000000
VERSION     DATGBK010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241209"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            4..605
                     /locus_tag="VKJ77_11380"
                     /pseudo
     CDS             4..605
                     /locus_tag="VKJ77_11380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190429.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
     gene            598..>1658
                     /locus_tag="VKJ77_11385"
     CDS             598..>1658
                     /locus_tag="VKJ77_11385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HMC45915.1"
                     /translation="MTSPQGPSNNTVKGPNEPSRNAGGGGGLPPNLPEPVIEPRSRWI
                     PSLVWVIPLIAALIGIALVVKSVSGRGPTITISFVSAEGLETGKTKVKYKDVDVGTVK
                     EITLSKDHSRVLVDVQLTKVAEDFAVKDTRFWVVRPRVAASGVTGLGTLLSGAYIGVD
                     AGKSKEDETHFVGLETPPAVTGDQKGRQFTLRGESLGSIDIGSPIYYRRVQVGQVVGF
                     SLDKDGTGVTMQVFVNAPYDQYVGSNSRWWHASGVDLRLDASGFKLNTQSLATVVLGG
                     IAFQTPPNQEPGQQAPDNMTFRLGSDEQDAMRDPDGQPIRVVMNFNQSLRGLSVGAPI
                     DFRGILLGSVTGIGIEYEP"
BASE COUNT          304 a          502 c          525 g          327 t
ORIGIN      
        1 ctgatcgcct gccacgcgtg caaccgcgtg caaaagcgcg tgttcacggt cgaacgccag
       61 ctttgcgtgc gctgcggctc gccgctgcat cggcgtaatc ctgactcggt cgcgcgtact
      121 tgggcgttgc tgttgtccgc cgcgatcctg tacattccgg cgaatttata tccggtgctg
      181 cacacgtcgt cgatcgtcgg ttccgaagac gacacgatca tgagcggcgt ggcgatgttc
      241 tggaacgatg gcgactatcc gctctccgcg atcattttat cgccagtatt ctcgtgccga
      301 tgctcaagct cggcacgctg gcgtttctca cctgggccac ccaatcgggc tccaagtggc
      361 gtcctcgcca gcgcacgacg ttgtatcgga tcgtcgaaaa aatcggccga tggtcaatgc
      421 tcgatgtctt tgtcgtgaca cttaccgttg cgctcgtacg cttcggttca ctcgccgtca
      481 tcacgccagg gccgggcgcg ctcgcgttcg gctgcgtggt ggtgctcacc atgctggcct
      541 ccatgcaatt cgacccgcga ctgatgtggg atcacatcga accttcagga aagaaacatg
      601 actagcccgc aaggtccttc gaacaacacc gtcaaaggcc cgaacgaacc gtcgcgaaac
      661 gcgggcggcg gtggcggctt gccgcccaat ctccctgagc cggtcatcga gccgcgcagc
      721 cgctggatac cgtcgctcgt ctgggtgatt ccgctgatcg ccgcgctgat cggcattgcg
      781 ctggtggtga agtcggtatc gggacgcgga ccgacgatta ccatcagctt cgtgagcgcc
      841 gaagggctgg agacaggcaa gaccaaggtg aaatacaagg acgtcgatgt cggcacggtc
      901 aaggagatca cgctgtcgaa agaccactcg cgcgtgctcg tcgacgtcca gctgaccaag
      961 gtcgccgagg acttcgcggt gaaagacacg cgcttctggg tagtgcgccc gcgcgtggcg
     1021 gcaagcggcg tgaccgggct cggcacgttg ttgtccggtg cgtatatcgg cgtggatgcc
     1081 gggaagtcca aagaggatga aacccatttt gtcgggctcg aaaccccacc ggccgtgacc
     1141 ggcgatcaaa aagggcggca gttcacgttg cgcggtgagt cgctaggctc catcgatatc
     1201 ggctcgccta tctattaccg gcgcgtgcag gtggggcaag tcgtcggctt ttcgctcgac
     1261 aaggacggca cgggcgtcac catgcaggtg ttcgtgaacg cgccgtacga tcagtatgtc
     1321 gggtcgaatt cgcgctggtg gcacgcaagc ggcgttgacc tgcggctgga tgcaagcggc
     1381 ttcaagctga acacgcagtc gctggcgacc gtcgtgttgg ggggtattgc cttccagaca
     1441 ccaccgaatc aggagcccgg acagcaggcg cccgacaaca tgaccttccg cctcggttcg
     1501 gacgaacagg acgccatgcg cgatcctgac ggccagccaa tccgtgtggt catgaatttc
     1561 aaccagtcgc tgcgcggctt gtcggtgggc gcgccaatcg atttccgcgg catcctgctc
     1621 ggcagcgtga cgggtatcgg gatcgaatat gagccgaa
//
LOCUS       DATGBK010000814         2131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218275, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000814 DATGBK010000000
VERSION     DATGBK010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218275"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..256)
                     /locus_tag="VKJ77_11390"
     CDS             complement(<1..256)
                     /locus_tag="VKJ77_11390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45916.1"
                     /translation="MKISSVRASRFLALLPLAAAALMLSACSSAPPLFSSDGRPTSMI
                     QCPANGGWSNCQENARALCAGSYDVLDQSSDNGQNSLLIAC"
     gene            complement(378..626)
                     /locus_tag="VKJ77_11395"
     CDS             complement(378..626)
                     /locus_tag="VKJ77_11395"
                     /inference="COORDINATES: protein motif:HMM:NF021452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2164 domain-containing protein"
                     /protein_id="HMC45917.1"
                     /translation="MSKDTNKTMLSRELEALAIDQLQRLAQERFDTRLGQFEAKEWLD
                     ELSKLIGAHFYNQALADVKAKIDARVEMIDSDIWGLQK"
     gene            complement(644..2089)
                     /locus_tag="VKJ77_11400"
     CDS             complement(644..2089)
                     /locus_tag="VKJ77_11400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HMC45918.1"
                     /translation="MHNDWTHVPVDYSDVLRRAMDSLFKTFENFSEGTFIVDKEARVV
                     WINKRYAARFGFSDPQEAIGRDCEAVIPNSLMREVVTTGKPILLDLLETDREPLVVTR
                     LPLKDDFGQTVGAIGFALFDEMKALTPLFSHYSRVQQELIATRQSLAQARRAKYTFAS
                     FVGTSAASLDVKRQARRAAQVDSPVLLSGETGTGKELLAHAIHGASTRAARPLVSVNV
                     AAIPDTLLEVEFFGAAAGAYTGADRKGRVGKFELADGGTLFLDEIGDMPLVLQGKLLR
                     VLQEKEFEPLGSNRIVRTDVRIIAATSADLPALVASGRFRADLFYRLNVLSIHAPPLR
                     ERAGDIEALVYAMLEELSADARPRHAGQFVLHDDALRLLCAYSWPGNVRELRNVLERA
                     VMLSDSEHIDARALGAFMGAASAVASPEPAGAAEQTDTTSYTEAMAGFEKRFLSEALR
                     ASGGRVAEAAQRIGIGRATMYKKIVALGIEV"
BASE COUNT          388 a          698 c          619 g          426 t
ORIGIN      
        1 tgcacgcgat caacaggctg ttctggccgt tgtcgctgct ttgatcgagg acgtcgtaac
       61 tgcctgcgca caatgcgcgg gcattttcct ggcagttact ccagccgccg ttggccgggc
      121 actggatcat gctggtcgga cggccatcgg atgaaaagag cggcggcgcg ctactgcacg
      181 cggacaacat caacgccgca gccgcaagcg gcaacagcgc cagaaaacgc gatgctcgta
      241 cgctggaaat cttcatccgg aacccctttt aacgctgttt ttattgttcc cgcaagtatg
      301 ccatgcggag ctttcggctt gcctccctgg ccgtacggat cgtgcgctag agcaggacct
      361 tctttggtgc gttcgcgcta cttttgaagc ccccagatgt cgctgtcgat catctcgacg
      421 cgggcgtcga tcttcgcttt tacatcggcg agcgcctggt tgtagaaatg cgcgccaatg
      481 agcttcgata actcgtcaag ccattccttc gcctcgaact gcccaagccg ggtgtcgaag
      541 cgctcttgcg ccaggcgctg caactggtcg atggcaagcg cctcgagctc acgggataac
      601 atcgtcttgt tcgtgtcttt gctcatgttt tttggctcat ggttcaaacc tctatgccca
      661 gcgcgacgat cttcttgtac atcgtcgccc ggccaatgcc aatccgctgc gccgcctctg
      721 ccacgcggcc gccgctcgcg cgcagggcct ctgagaggaa acgcttttcg aaacccgcca
      781 tggcttcggt gtaggacgtc gtatcggttt gctccgctgc gcccgcgggt tccggcgatg
      841 ccaccgcgct cgctgcaccc atgaaggcgc cgagcgcgcg ggcatcaata tgttcactgt
      901 ccgacaacat caccgcgcgc tcgagcacgt tgcgtagctc gcgcacgttt cccggccacg
      961 agtacgcgca gagcaggcgc aacgcgtcgt catggagcac gaactggccg gcgtgacgcg
     1021 gtcgggcatc ggcggaaagt tcctcgagca tggcgtacac cagcgcttcg atatcccccg
     1081 cccgctcgcg caacggcggc gcgtgaatgg acaacacgtt cagccgataa aacaagtccg
     1141 cgcgaaaccg gccgctggcg accagcgccg gcagatccgc cgatgtcgcc gcgatgatcc
     1201 ggacatcggt gcgcacgatc cggttcgatc ccagcggctc gaactccttc tcttgcaaca
     1261 cgcgcagcaa cttaccctgc agcacgagcg gcatatcgcc gatttcatcg aggaagagcg
     1321 tgccgccatc ggccagttcg aacttgccta cccggccttt gcgatccgcg cccgtatacg
     1381 cgcccgccgc cgcgccgaaa aactccactt ccagcaaggt gtccggaatc gccgcgacgt
     1441 tcacgctcac gagcggccgc gcggcgcgcg tggatgcgcc gtgaatcgcg tgcgccagca
     1501 gctctttgcc cgtgcccgtt tcgccggaca gcagcacggg cgaatcgact tgcgccgcgc
     1561 gtcgcgcctg gcgtttgaca tcgaggctcg cggcgctcgt ccccacgaaa ctcgcgaacg
     1621 tgtatttcgc gcgccgtgcc tgcgcgagcg attgccgtgt cgcgatcagt tcctgctgca
     1681 cgcgcgagta gtgcgaaaag agcggcgtga gcgccttcat ttcgtcgaag agcgcgaaac
     1741 caatagcacc gaccgtctgg ccgaaatcgt ccttcaacgg caggcgcgtg acgaccagag
     1801 gctcgcgatc cgtttccagc agatcgagca ggatcggctt gcccgttgtc acgacctcac
     1861 gcatcaggct gttcgggatc accgcttcgc aatcgcggcc gatcgcctct tgcgggtccg
     1921 aaaacccgaa gcgtgccgca tagcgtttgt tgatccagac aacgcgcgct tctttatcga
     1981 cgataaacgt gccttcgcta aaattctcga aggtcttgaa aagcgaatcc atcgcgcgac
     2041 gcaaaacgtc gctgtaatcg acggggacat gcgtccagtc gttgtgcatc ctgtttctcg
     2101 tgagattttc tcgatgtaga gacagggtat c
//
LOCUS       DATGBK010000815         1995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148379, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000815 DATGBK010000000
VERSION     DATGBK010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148379"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..738)
                     /locus_tag="VKJ77_11405"
     CDS             complement(<1..738)
                     /locus_tag="VKJ77_11405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HMC45919.1"
                     /translation="MNSTLRLTTAQALVRYLAAQQTPDGEPLFGGVFAIFGHGNVAGI
                     GEALYAHRETLPTYRAHNEQAMAHAAIAYAKAHFRRRMMAVTTSIGPGATNLVTAAAL
                     AHVNRLPVLLLPGDVFVSLAPDPVLQQVEDFADGGISANDALKPVSRYFDRIVHPAQL
                     LTALPRAMRVLTDAALCGPVTLALPQDVQAMAYDYPASFFEPRVVPFHTPSPVDAEIA
                     QAAAALRAAKKPLLVSGGGVLYGLATDA"
     gene            complement(735..>1995)
                     /locus_tag="VKJ77_11410"
     CDS             complement(735..>1995)
                     /locus_tag="VKJ77_11410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HMC45920.1"
                     /translation="TNAMLVVKRGPMGCSIIDGDVPLSIDDAPVYRGVEVEVLNVLGA
                     GDAFASGFLAGWLRDEPLEVCARTANACGGLVVSRHGCAPAMPTPAELTYFLDAAQAD
                     PIRMRRPDRDATLARLHRVTPARKTWDEVLGFAFDHRNQFFDLAQQTGADESRIAALK
                     ALFVEAVAQTEKERGLEGRIGVLIDDRYGQDALNAATGRGWWIGRPVELPGSMPLIFD
                     HGRSIGTTLIEWPREHVAKCLVHYHPDHPHDLRLEQEAQIRALYDAVQASGHELLLEI
                     IVPKNGPPIEEDTALRSLKRLYNLGIYPEWWKLEPMSATQWQAVDALIAERDPACRGV
                     VLLGLSAAVDQLCEGFKAAALSKTCRGFTVGRTIFYEPSHAWLAGSIDDAELIARVRR
                     TFETLIDAWREARTKNATQALTQEQAA"
BASE COUNT          384 a          630 c          613 g          368 t
ORIGIN      
        1 tgcatcggtt gccaagccgt agagcacacc gccgcccgac acgagcaagg gctttttagc
       61 cgcgcgcaat gcagcggcgg cctgcgcgat ttctgcatcg acgggcgagg gcgtatgaaa
      121 cggcaccacg cgtggttcga agaacgacgc agggtagtcg taggccattg cctgcacgtc
      181 ttgcggcagc gcaagtgtca ccgggccgca caatgcggcg tcggtcagca ctcgcattgc
      241 gcgcggcaac gcagtcagca attgcgccgg atgcacgatg cggtcgaagt aacgcgagac
      301 gggtttcaat gcatcgttcg cggaaatacc gccatcggcg aaatcttcta cttgctgcaa
      361 gaccggatct ggggcgagcg atacgaacac atcgccgggt agcaacaaca ccggcaaccg
      421 gttcacgtgc gcgagcgcag cggcggtcac caggttggtt gcgccgggac caatggacgt
      481 ggtcaccgcc atcatgcgac gtcgaaagtg cgcctttgca tacgcaatag ccgcgtgcgc
      541 catcgcctgc tcgttatgcg cgcgataggt cggcagcgtc tcgcgatgcg cgtacaacgc
      601 ctcgccaatg cctgccacgt tgccatgccc gaagatcgca aagacgccgc cgaacagcgg
      661 ctcgccgtcc ggggtttgct gcgcggcgag atagcggacc agcgcttgcg cggtggttaa
      721 acgaagcgtg ctgttcatgc tgcctgctcc tgcgtaagcg cttgcgtggc gttctttgtc
      781 cgtgcttcgc gccatgcatc gatcaacgtt tcgaacgtcc gtcgtacccg cgcgatgagt
      841 tcggcgtcgt cgatggaacc cgccagccac gcgtgactcg gctcgtaaaa gatcgtcctg
      901 ccgacggtga atccgcgaca cgtcttcgac aacgcagcag ccttgaagcc ctcgcacagt
      961 tgatcgacgg cggcagacaa gcccagcaga acgacaccac ggcacgccgg atcacgctcg
     1021 gcaatcagtg catcgaccgc ttgccactgc gttgcgctca taggttcgag cttccaccac
     1081 tcgggataga tgccaaggtt gtagaggcgt ttcaatgatc gcaacgctgt atcttcctcg
     1141 atcggtggac cgttcttcgg gacaatgatt tcgagcaata actcgtgccc gctggcctga
     1201 accgcgtcgt atagcgcgcg aatctgcgct tcctgttcca ggcgaagatc gtgcggatga
     1261 tcgggatgat agtgaaccag gcacttcgcc acatgctcgc gtggccactc gatcagggtc
     1321 gtgcctattg accggccatg atcgaagatt agcggcatcg agccgggcaa ttccacgggc
     1381 cgtccgatcc accagccacg tcctgtcgct gcgttcaacg cgtcctgacc gtagcggtcg
     1441 tcgatcaaca cgccgatgcg tccttccagg ccgcgttctt tttccgtctg cgccacggct
     1501 tccacgaaca aggctttgag ggcagcaatg cgcgactcgt ccgcgccggt ttgctgcgcc
     1561 agatcgaaga actggttgcg gtgatcgaag gcaaaaccga gcacttcgtc ccatgttttg
     1621 cgggccggtg tcacacgatg cagacgcgcg agtgttgcgt cgcgatcggg cctgcgcatg
     1681 cggatagggt cggcctgcgc ggcatcgagg aagtaggtga gttcggcggg cgttggcatg
     1741 gcgggcgcac aaccatgacg cgatacgaca agcccgccgc atgcattcgc cgtgcgtgca
     1801 cagacttcca gcggctcgtc cctcaaccat ccggcgagga agccggatgc gaaggcatcg
     1861 cccgcgccga gcacgttcag cacttcaact tcaacgccgc gataaaccgg cgcatcgtcg
     1921 atggaaagcg gcacgtcacc gtcgatgatc gagcagccca tcggcccgcg cttgaccacc
     1981 agcatggcgt tcgtc
//
LOCUS       DATGBK010000816         1573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_310678, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000816 DATGBK010000000
VERSION     DATGBK010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310678"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..1573)
                     /locus_tag="VKJ77_11415"
                     /pseudo
     CDS             complement(70..1573)
                     /locus_tag="VKJ77_11415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344741.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
BASE COUNT          293 a          488 c          498 g          294 t
ORIGIN      
        1 tgctgtcgtg ccgcagccgc agcatgcctt tcagccaacg tctcgccaaa ttgccgtttt
       61 agcttcgggt caggccgttt caggatgccg cggcatgggt ggccgggtat cggccgggcg
      121 cacttcactg cggtcgcgcc ctcccgattt cgccgcatac aacgccagat ccgcgcgctt
      181 gagcaggttt tccgcggtgt cgccgtcact cagttccgtg atgccaatgc tcacactgag
      241 catggtgtcg tcggggagat aagcgcaatg ctcctggttg aagcgtttgc gcaggcgttc
      301 gaggaccgtg tgggcgtcgg cgagtgcggt atgcggcagc agcaggccaa attcctcacc
      361 gcccaaccgc ccgacaccgt cgctggcgcg cagttgctcc tcgcacatcc gcacgaaatg
      421 ttcgagcgcg cggtcgccgg ttgcgtggcc gaagcggtcg ttcacctgct tgaagtagtc
      481 aagatcggca attgcaactg atagcggccc gcctcccgag cgggccagat cgacttcacg
      541 acgcaaggta tccaggaaat aacgtcgtga cagcgccccg gtcaacgcgt cgtgccgggc
      601 ttcggcggac agcagcgcat tggccgactg caactggttg gccagatggc gcgtggcccg
      661 gtgcaagcgc cgttcgcgca ggtattacac ggtgatcaca atagccaaca ggctcacgcc
      721 gagcgccgtc aggaaaacca gcagcctgtc gcgccgttga ttgctcacaa tttccgccca
      781 gttcggcagc ggatggacaa tatgcgcggc gagacccgag ttcagcccag tgcgttcgtc
      841 gtagagagag ggtgtgctgc tgtcgccaga ggagaaaaac gagcgcgcga gcgaaggcgg
      901 cagccagggc gcgtccgccc gcacgcgttc tccaatgttg gtcagctgca gcgtacggaa
      961 atcgacccgc cgatacgcat ccagccgctc cgaccgagac atccgcagca cgggcgaatc
     1021 cggcagcacg cgattttcga gctggctttc gtgagccatg acgatcacgc cgttgctgtc
     1081 tgtgacgaat gtgcccgcgc gtgccaccca gtggcgcagg cggtcgacac tcactttcgc
     1141 gatcaccgcg cctaccagga agccgtcgcg atacaccggc gtggcgatga aaataccggg
     1201 gtctccgctc aacctgccga cgccgtaagt ttcgttgaac gcgccgagca gcgctttctg
     1261 gatgtaactg cgcatgcgca tgtcggtgcc aacgaagctg ttcgaatcaa taccattgct
     1321 cgacgccacg caaaaaccat cgctattgac gacccatacg tagtcgaggc ctgtgaagcc
     1381 gcgggcattg cgcaggaagt tgtcgagttt ggcgagcgct ggcacggcga gcaactttgc
     1441 tcgccgctcc gggtcggttt gcctgatctc ttcgggggaa ctgtgagatt gggcgagcgc
     1501 cagctggatc atgtccattt cggcgatagt ggccggaatc gcccgggaca tggcgaggtc
     1561 gctggcaatg atc
//
LOCUS       DATGBK010000817         1872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218315, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000817 DATGBK010000000
VERSION     DATGBK010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218315"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..632)
                     /locus_tag="VKJ77_11420"
     CDS             complement(<1..632)
                     /locus_tag="VKJ77_11420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45921.1"
                     /translation="MKPDSHDLNDLMYFSYVVEHGGFSAAERVLGISKSRLSRRVSEL
                     ETSLGVRLMQRSTRKLALTEAGQLFYQHCKAMLAEAQAAVDIVHSLRDSPRGSVRVSV
                     PVTIAQTFLSEVMPDFLHRYPEVRVILSVTNRVIDLFEDPIDVALRVRSEPPVNSTIV
                     ARPLWRAEQMLVAAPSLLKPNAPPLTPSELAQFDTIDVPATDGRHVFRLIA"
     gene            803..1675
                     /locus_tag="VKJ77_11425"
     CDS             803..1675
                     /locus_tag="VKJ77_11425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HMC45922.1"
                     /translation="MESTRSIERTIAALRTVEGGGFVVHRPFPTRLLMDFDPFLLLDE
                     MGPVDYAPGEAKGAPDHPHRGFETVTYALEGQFGHKDSAGHSGTLRQGDVQWMTAGAG
                     VVHSEMPDPEFTRTGGRVHGLQLWVNLPKRDKMIAPHYQEIASEQIPVAASDDGRVRV
                     KVIAGEALGVKAAIETRTPILYQHFSLQPGASVVHPVPRDFRVFGYALSGNGLYGEAK
                     QAVQARQMIVFADDGDTVTFAAGDEPLELLLIGGVPLKEPVVRYGPFVMNTEEEIRQA
                     VVDYQAGRMGSINH"
BASE COUNT          379 a          563 c          568 g          362 t
ORIGIN      
        1 gcgatcaggc ggaacacgtg acggccgtcg gttgccggaa catcgatggt atcgaactgg
       61 gccagctccg acggcgtcag cggcggcgca ttcggcttga gcagcgaggg cgctgccacc
      121 agcatctgtt ctgcccgcca cagcgggcgc gcaacaatgg tcgagttgac ggggggttcc
      181 gagcgcacgc gcaacgcaac gtcgattggg tcttcgaaca aatcgatcac gcgattcgtc
      241 acgctcaata tgacgcgaac ttcggggtat cgatgcagga aatcgggcat cacctccgac
      301 aagaacgtct gcgcgatcgt caccggcacg ctgacccgga cactgccgcg cggcgaatcc
      361 cgcaggctat gcacgatatc gaccgcggcc tgggcttctg cgagcatcgc cttgcaatgc
      421 tggtagaaga gttgcccagc ctccgtcagt gcgagttttc gcgtggagcg ctgcatcaaa
      481 cgcacaccca gcgacgtctc gagctcggac acgcgccgcg acaaacgcga cttggaaata
      541 cccagcaccc gctccgccgc cgagaaaccg ccatgctcga caacgtacga aaaatacatc
      601 agatcattga ggtcatgcga atcaggtttc atgcggtcag gtctttcgtt ggggttttcg
      661 ttgttccgca ggtgggacaa tcaattgcgg tttgacggct ttttccgcga aataccgtcc
      721 atataataac gctatgtttt aaatttggcg ctaatgcctc attcgttgca tcggccacgc
      781 tggcccacca agcgaggaca aaatggaaag cacacgcagt atcgaacgca cgattgccgc
      841 gctccgcacg gtggagggtg gcggttttgt cgtacatcgc ccgttcccga cgcggctctt
      901 gatggatttc gacccgttcc tgctcctcga tgaaatgggc cccgtcgact acgcgcccgg
      961 cgaggcgaaa ggcgcgcccg atcatccgca tcgcggcttt gaaaccgtga cgtacgctct
     1021 cgaaggccag ttcggccaca aggattcggc gggacattcc ggcacgctgc gccagggcga
     1081 cgtgcaatgg atgacggccg gcgcaggcgt ggttcacagc gaaatgcccg atcccgaatt
     1141 cacgcgcacc ggcggccgcg tgcatggttt gcagctttgg gtgaacctgc ccaagcgcga
     1201 caagatgatc gcaccgcatt atcaggaaat cgcgtccgaa cagattccgg ttgcagccag
     1261 cgatgacggc cgcgtgcgcg tgaaagtcat tgcgggtgaa gcgcttggcg tgaaggcagc
     1321 gatcgaaacg cgtacgccca ttctttacca gcatttttcg ctgcaaccag gcgcgtcggt
     1381 cgtgcatccg gtgccacggg actttcgcgt gttcggttat gcgttgtcgg gtaacggtct
     1441 gtacggcgag gcgaagcaag ccgtgcaggc gcggcagatg atcgtgttcg cggatgatgg
     1501 cgacacggtc acgttcgccg ccggcgacga gccgctcgaa ttgctgctga tcggtggcgt
     1561 gccgctaaaa gaacccgtgg tccgctacgg cccgttcgtg atgaacacgg aagaagagat
     1621 ccgccaggcc gtggtcgatt accaggccgg acgcatgggg tcgatcaacc actagatcaa
     1681 ccaccaggca ggctcaccgc cgtcgggcgg tcagaccgtg cgtgtttcac cggcgcggca
     1741 cgaatgacac tatttgcgtc acaatagtca ttcgtgccgc gccgttttat cgtctacttt
     1801 tatggcccgc accatctgtc caacacttaa tccggagtac cgcatggccg aaaagtttgt
     1861 gacgccgcct gt
//
LOCUS       DATGBK010000818         1549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218352, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000818 DATGBK010000000
VERSION     DATGBK010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218352"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1549)
                     /locus_tag="VKJ77_11430"
     CDS             complement(<1..>1549)
                     /locus_tag="VKJ77_11430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="maltotransferase domain-containing protein"
                     /protein_id="HMC45923.1"
                     /translation="HANALQRNSAALASTGELRALTGAGTPYAAILRGSGPDLRVAAE
                     AALIVLNPDLTTPVYVDTRHLLDGAPGNFTRFRAIDEDTTETPLPLEPFLLQPGEVRL
                     LRGSAEPPILLAQPQVKRGAKAADKKSVNEALVAPRVAIESVTPSVDHGRFPAKRIVG
                     EAVEVTAAIFAEGHDKIAAAVQWRAADETDWHEAPMIPVLPLGNDLWSTHIPIDRLGR
                     HEFTVIAWRDDFASLIDHMQKKLKANQTVELELEEARHLFALILAEVKTTEGAETEPL
                     EGIVKQFAKADADTRLTLALAPETAQAIEAARHRPFLSRDPVTYRIDAERAAARFASW
                     YEIFPRSMSDDENRHGTFVDVIGKMPRIREMGFDVLYFPPINPIGVANRKGKNNTLTA
                     LPGDVGSPYAIGGKEGGHDALHPELGNLDDFKQMLEAARAHGLEIALDFAVQCAPDHP
                     WLKEHPTWFAWRPDGTLRYAENPPKKYQDIVNPDFSSRDAGALWNALRDVVLFWIEQG
                     VSIFRVD"
BASE COUNT          256 a          508 c          482 g          303 t
ORIGIN      
        1 ttgtcgaccc ggaaaatgct cactccctgc tcgatccaga acagcaccac atcgcgcaag
       61 gcattccata gcgcgccggc gtcccgggac gaaaaatcgg gattgacgat gtcctgatat
      121 ttcttcggcg gattttccgc ataacgcaac gtgccgtccg ggcgccacgc gaaccacgtg
      181 ggatgctcct tcagccatgg atgatccggc gcacactgca cggcgaaatc gagcgcgatc
      241 tccagaccgt gggcacgcgc cgcttccagc atctgcttga agtcgtccag gttgccgagt
      301 tccggatgca aggcgtcgtg gccgccttcc ttgccaccga tcgcgtacgg gctgcccacg
      361 tcgccgggca gcgcggtgag cgtattgttc ttgcccttgc ggttcgccac gccaatgggg
      421 ttgatcggcg ggaagtacag cacgtcgaaa cccatctcgc gaatgcgcgg catcttgccg
      481 atcacatcga caaacgtgcc gtggcgattt tcgtcgtcgc tcatggagcg cgggaagatc
      541 tcgtaccagc tggcaaagcg tgcagcggcg cgttcggcgt caatgcgata cgtcaccgga
      601 tcgcgcgaca ggaacggccg atgccgggcg gcctcgatcg cctgcgcggt ttccggcgcg
      661 agcgccaacg tgagccgggt gtctgcatcg gctttggcga actgtttgac gatcccttca
      721 agcggttccg tctccgcgcc ttccgtggtt ttcacttctg ccaggatcaa tgcgaacaaa
      781 tgccgcgctt cctcgagttc cagttcaact gtctggttcg ccttcagctt cttctgcatg
      841 tgatcgatca gcgaagcgaa gtcgtcgcgc cacgcgatca ccgtgaattc atgacggccc
      901 aggcgatcga ttggaatgtg cgtgctccac aggtcgttgc cgagcggcag gaccgggatc
      961 atgggggctt cgtgccagtc ggtttcatcg gcggcgcgcc actgcacagc ggccgcgatc
     1021 ttgtcgtggc cttccgcgaa aatcgccgcc gtgacttcaa ccgcttcgcc aacgatccgc
     1081 ttcgccggaa agcgcccgtg atcgaccgat ggcgtcacgc tttcgattgc cacccgaggc
     1141 gctaccaacg cctcgttcac tgacttcttg tcggccgctt tggcgccgcg cttgacctgc
     1201 ggttgcgcca gcaggatggg cggctcggcc gagccgcgca gcaggcgcac ttcgccaggt
     1261 tgcaacagga aaggctcgag cggcagcggc gtttccgtcg tgtcctcgtc aattgcccga
     1321 aaccgcgtga agttgcccgg tgcgccgtcc agcagatggc gcgtatcgac ataaaccggc
     1381 gtggtgagat ccggattcag cacgattagc gccgcttcgg ccgcgacccg caggtccggc
     1441 ccgctcccgc gcagaatggc tgcgtaaggc gtgcccgcgc cggtcagcgc gcgcagttcg
     1501 ccggtgctcg ccagcgccgc cgagttgcgt tgcaacgcgt tcgcgtgcg
//
LOCUS       DATGBK010000819         1773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_264577, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000819 DATGBK010000000
VERSION     DATGBK010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264577"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..82
                     /locus_tag="VKJ77_11435"
     CDS             <1..82
                     /locus_tag="VKJ77_11435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HMC45924.1"
                     /translation="FEDWLFNDNGKFQLRSVHSPQATTID"
     gene            444..1703
                     /locus_tag="VKJ77_11440"
     CDS             444..1703
                     /locus_tag="VKJ77_11440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45925.1"
                     /translation="MSTSRVIFASFIGTAIEFYDFYVYATAAALVIGPVFFPHSSPAA
                     QALSAFVTFGIAFIARPIGSFIFGHFGDRIGRKSTLVASLLVMGVSTTLIGFVPGYAS
                     IGSLAPVLLCILRFGQGIGLGGEWGGAALLATEYAPQNKRGWFGMFPQLGPSVGFLAS
                     NGLFFGLALSLTDEQFRSWGWRVPFIVSAVLVALGLYVRLKIAETPAFREAIEKKERV
                     RVPIATLFSQYLKPTLLGAIAMIVCYTLFYISTVFSLSYGVSTLHFTREKFLGLLCFA
                     VIFMAIATPLSALASDRFGRRPVLIVGCIAAILSGFTMAPLLGSGNTYAVALFLTIEL
                     FLMGVTFAPMGALLPELFPTNVRYTGAGVSYNVGGILGASVAPYIAQLLANRGGLAWV
                     GGYVSIAAAISLLGVLCMRETRDIKLS"
BASE COUNT          295 a          565 c          516 g          397 t
ORIGIN      
        1 gttcgaagac tggctcttca acgacaacgg caagttccag ctacgcagcg tccattctcc
       61 gcaggcgacg accatcgatt aagcgaaaca aaacggaacc attgatgcat gaatcaatac
      121 ggtttccttg cccgccacgg cgcacgatcg ttataatttt cgatacccca cgccggccat
      181 gccggcaaag ccgtcgcctt cgcccatcca gcgcttgagc cggcgcctga ccggtcgact
      241 ccgcgacaca ccacgcgcag ttccacaccg ttcggtttca ccgccgtacg ccgcctcgct
      301 gcgcattcaa aacaaagtgt cccgacgcgc gctcccattc ccggacgcga cacgaagggc
      361 gaaccggaga cgccatgtca tcagcctcac cctcgggctc accatcgggc tctttacccg
      421 catcgcccgc aagcgacgcg aaaatgagca cttcccgcgt gatcttcgcg agttttatcg
      481 gcacggcgat cgagttctac gatttctatg tctacgcgac cgccgctgcg ctggttatcg
      541 gcccggtctt tttcccgcat agctcgcccg ccgcgcaagc gttgtcggcg ttcgtcacgt
      601 ttggtatcgc gttcatcgcg cggccgatcg gctcatttat cttcggccat ttcggtgacc
      661 gcatcgggcg aaaatcaacg ctcgtcgcct cgctgctcgt gatgggcgtg tcgaccacgc
      721 tgatcggctt cgttccgggc tacgcgtcca tcggcagcct ggcgccggtg ctgctgtgca
      781 tcttgcgctt cggccagggc atcgggcttg gcggggaatg gggcggagca gcgctcctcg
      841 ccaccgaata cgcaccgcaa aacaagcgcg gctggttcgg catgttcccg caactcgggc
      901 cgtcggtggg tttcctggca tcgaatggat tgttcttcgg gctggcgctc tcgctcaccg
      961 atgaacaatt tcgtagctgg ggctggcgcg tgccgttcat cgtcagcgcg gtgctggtgg
     1021 cgctcggact ttatgtgcgc ctgaaaatcg cggaaacgcc ggcgtttcgt gaggctatcg
     1081 agaaaaagga acgcgtgcgc gtgcctatcg cgacgctgtt cagccaatac ctgaaaccga
     1141 cgctgctcgg cgcgatcgcg atgatcgtgt gctacacgct cttctacatc tcgacggttt
     1201 tttcgctttc gtatggcgtc tcgacgctgc atttcacgcg cgagaaattc ctcggcttgc
     1261 tctgtttcgc ggtgattttc atggctatcg cgacgccgct ttccgcatta gccagcgata
     1321 gattcggccg ccggccggtg ctgattgtgg gttgtatcgc agccatcctg tccggcttca
     1381 ccatggcccc actgctcggc agcggcaaca cctacgccgt cgccctgttt ctcaccatcg
     1441 aactgttcct gatgggcgta acctttgcac cgatgggcgc actgctgccc gagttgttcc
     1501 cgaccaacgt gcgttatacc ggcgcgggtg tctcgtataa cgtgggcggg atcctggggg
     1561 cgtcggtagc gccgtacatc gcgcaattgc tggcgaatcg cggcggtttg gcgtgggtcg
     1621 gcgggtatgt gtcgatcgcg gcggcgatca gcctgctcgg cgtgctatgt atgcgggaaa
     1681 cgcgggacat caagctttcg taacgctcaa tgcgtgctgg cgaggtttca ggaactcact
     1741 ggcacgcgtt gttcaaactc cctatctcat ctg
//
LOCUS       DATGBK010000820         3425 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_264640, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000820 DATGBK010000000
VERSION     DATGBK010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3425
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264640"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VKJ77_11445"
     CDS             <1..192
                     /locus_tag="VKJ77_11445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45926.1"
                     /translation="LADWPGLAPSALYQGRDLRPTLGLDSLIAAAAGETFGLDPVHVR
                     ANLFTQKTASPMSSRLLRT"
     gene            251..451
                     /locus_tag="VKJ77_11450"
     CDS             251..451
                     /locus_tag="VKJ77_11450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011658913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YXWGXW repeat-containing protein"
                     /protein_id="HMC45927.1"
                     /translation="MKHVFSIALLSIMLTACVVEPARPPRPEPLVEVVPAQPAPGYHW
                     VKGHYRWAGNQWVWERGHWAAY"
     gene            complement(500..1402)
                     /locus_tag="VKJ77_11455"
     CDS             complement(500..1402)
                     /locus_tag="VKJ77_11455"
                     /EC_number="3.1.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HMC45928.1"
                     /translation="MIETRLIVDANNHLGEGPLWDVKEQRLYWIDSTAAEISSCRADG
                     SDIRRYFVPRHIGSMALRERGGAVVALANGLHFYDFETQTVKLIADPESDDPETRFND
                     GKVDRRGRFIAGTMAYDFDRYDADRGQRSSRSGALYRLDTNGAVTRLDGGISCSNGPC
                     WSPDNRTFYFTDTYDKRMYAYDYDIETGEVANRRVFASARDMAGTFDGATVDAEGYVW
                     SALVFGGRILRFSPDGKLDRVVEFPVRNLTSVMFGGPNLDILFVTTMGRPMWGIPQKE
                     RDKGGLFAITGLGAKGLPEPRFAG"
     gene            complement(1418..2368)
                     /locus_tag="VKJ77_11460"
     CDS             complement(1418..2368)
                     /locus_tag="VKJ77_11460"
                     /EC_number="1.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HMC45929.1"
                     /translation="MRRRIAVIGSGRIGRAWAIVFARAGFGVRLHDADRAMLEGAIPS
                     IRSSVSDLAEYGLIDEPEERIVSRVTVCEQLAVAVSDVDLVQENIVEIVEVKRTLFAE
                     LDKLTRPDTLLASSTSGLPASTFTEALEGRARCLVAHPVNPPSLVPLVELCGAPWTSQ
                     DTLARARALYEEAGQEPVTVAREIPGFLLNRLQGVLLDEALSLYARGYASAADLDTVM
                     RDGLGLRWSFMGPFETIDLNAPGGVADYAARYGAMYRSFAKDSVPFDWSPDSIERLDA
                     ERREVLPRNEIESRSRWRDRRLMALLAHRRATLKSDDEKS"
     gene            complement(2387..>3425)
                     /locus_tag="VKJ77_11465"
     CDS             complement(2387..>3425)
                     /locus_tag="VKJ77_11465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45930.1"
                     /translation="RNDPGARRVRFEVENFRPIENTELKGHVLGDWIERNREWVKYVV
                     PASLLFFAVIAITGVVYGPGVLASANFYTSLLTLTLFLAVLGLGQGAVILTGGLDLSV
                     PWLITLSGVLLTGLTHGVNEAATWAVPLVLCAGLIVGVFNGVGVVVLGLPPIVVTLAA
                     NGLLQGITLIYCNGSPQGWAPSVISNFTNGRVGPLSLAAWCVPLFLALALLLLHRTAF
                     GRRVYAVGNSQVAAKLSGVRVGATLIAVYCLSGLCSAVVGLLLAGFSSQAFLGMGDPY
                     LLPSIAVVVVGGALITGGRGHYLGVFGGALLLTALGTLLAGTTVPPAVRDIINGLVVL
                     AAVITLRDKKA"
BASE COUNT          733 a         1129 c          977 g          586 t
ORIGIN      
        1 ctggcggact ggccgggatt ggcgccgtcg gcgctgtatc agggtaggga tttgcggccc
       61 acgcttgggc tcgacagcct gattgcggct gcggccggag aaacgttcgg cctcgatccg
      121 gtccacgtta gggcaaatct ctttacacag aagaccgcta gcccaatgtc cagcaggttg
      181 ctgcggacgt agcagcgcaa cgcgctgaca acgcagtcac atatttaact tcacaaggga
      241 agaactaaaa atgaaacatg tatttagcat tgcactcctt agcatcatgc tcaccgcttg
      301 cgtggtagaa cccgcacgcc caccgcggcc ggagccgctt gttgaagtcg tgccggcaca
      361 accggctccg ggttatcact gggtgaaagg acactacaga tgggcgggaa atcagtgggt
      421 atgggagcgc gggcattggg cagcgtattg attttgccag ggacggttgt tgtgcccgct
      481 taagcgcaca ctgccgcccc tatcctgcga acctgggctc gggcaaacct tttgcgccca
      541 gcccggtgat cgcgaacaac ccacccttgt cacgctcctt ctgaggaatg ccccacatcg
      601 gccggcccat ggtcgtgaca aacaaaatat ccagattcgg accgccgaac atcacgcttg
      661 tcaggttgcg tacggggaat tccacgacgc gatcaagctt gccgtccggc gagaatcgca
      721 agatccgacc accgaagaca agcgccgacc acacatagcc ctcggcatca actgtcgcgc
      781 catcgaacgt gcccgccatg tcccgcgccg atgcaaacac ccgccggttc gcaacctccc
      841 cggtctcgat gtcgtagtcg tacgcgtaca tccgcttgtc gtaagtatcg gtgaaataga
      901 aggtgcggtt gtccgggctc cagcatggac cgttcgaaca acttattcca ccgtccagac
      961 gcgtcaccgc gccattggtg tccaaccgat acaaagcacc gcttcggctc gaacgttggc
     1021 cgcgatcggc gtcgtagcgg tcaaagtcgt aagccatcgt cccggcaata aaccgccctc
     1081 gccggtccac tttaccgtcg ttgaaacgcg tctcgggatc atcgctctca gggtcggcaa
     1141 tgagcttcac cgtctgcgtc tcgaagtcgt agaaatgcag gccgttcgcg agcgcaacca
     1201 ccgcaccgcc acgctcgcgc aacgccatcg aaccaatgtg gcgtggtacg aaataacgcc
     1261 gtatgtcgct gccgtcggcg cggcaactgc tgatctcggc agcggtgctg tcgatccagt
     1321 aaaggcgctg ctccttcaca tcccacagcg gtccctcgcc aagatgattg ttggcatcaa
     1381 cgatcagacg ggtttcgatc atggctgtct ccggttatca actcttttcg tcatcggact
     1441 tcaaggtcgc gcgacgatgg gcaagcaggg ccatcaaccg ccggtcacgc cagcggctac
     1501 ggctttctat ttcattgcga ggcaacactt cgcggcgctc ggcatcgagt ctctcgatgc
     1561 tgtcgggcga ccagtcgaac ggcacactgt ccttcgcgaa ggagcggtac atcgcgccat
     1621 aacgcgcggc gtaatccgcc acgccaccgg gcgcgttcag gtcgatggtt tcaaacggcc
     1681 ccatgaacga ccaccgcagc ccgaggccgt cgcgcatcac ggtgtcgaga tcggcggcgc
     1741 ttgcataacc tcgtgcatac aggctcaatg cttcgtcaag aagcacgcct tgcagacggt
     1801 tcaacaggaa acccgggatc tcgcgtgcaa cggtcaccgg ctcctgacca gcctcctcgt
     1861 agagcgcacg cgcacgggcc agcgtgtcct gcgacgtcca cggcgcaccg caaagctcga
     1921 ccagcggcac gagcgaaggc ggattcacgg ggtgcgccac caggcaccgt gcgcggccct
     1981 ccagtgcttc ggtgaacgtg gaggcaggca agccggaggt tgaactggcc agcagcgtgt
     2041 cggggcgcgt cagcttgtcg agttcggcaa acaacgtgcg cttgacctcc acgatctcca
     2101 caatgttctc ctgcaccaag tcgacatcgc tcaccgcgac cgcgagctgt tcacataccg
     2161 tgacacgcga cacgatccgc tcttccggct cgtcgatcaa tccatattcg gcgagatccg
     2221 acacactgct gcggatagac ggaatcgcgc cctcgagcat cgcgcggtcg gcatcatgca
     2281 gcctgacccc gaaacccgca cgcgcgaaca cgatcgccca cgcgcggcct attcgtcccg
     2341 atccaatcac tgcaatgcgt ctgcgcatgc gtagctccat cgatgatcaa gcctttttat
     2401 cgcgcaacgt aatcacggca gccagaacaa cgaggccgtt gatgatgtcg cgtacggctg
     2461 gcggcacggt cgtgccggcg agtagcgtgc ccagcgcagt cagcagcaat gcgccgccga
     2521 atacgccgag atagtgaccg cggccgccgg tgatcaatgc gccgccaacc accaccaccg
     2581 caatggaggg cagcagatag gggtcgccca tgccgaggaa agcctggctg ctgaagccgg
     2641 caagcaacag gcccactacg gcggaacaca aacccgagag gcaatacacc gcgatcaagg
     2701 tggcgcccac gcgcacaccc gacagcttcg ccgcgacctg tgaatttccg actgcataga
     2761 cgcgtcgccc aaaagccgtg cgatgcagca gcagcaacgc caatgcaagg aacagcggca
     2821 cgcaccacgc ggcaagcgac aagggaccca cacgcccgtt tgtgaaattg ctgatgaccg
     2881 acggtgccca gccttgcggc gaaccgttgc agtaaatcag cgtgatgccc tgcagcaagc
     2941 cgttggccgc cagcgtgacg acaataggcg gcaagcccag caccacgacc cccacgccgt
     3001 tgaacacgcc cactatcaag ccagcgcata gcaccagcgg tacagcccac gtcgcggctt
     3061 cgttgacgcc atgcgtcagc ccggtcagca acacgcccga cagcgtgatg agccagggca
     3121 cggaaaggtc gagtccgccg gtcaggatca cggcgccttg cccaagccct agaacggcca
     3181 ggaacaaggt cagcgtcagc aagctggtat agaagttggc gctcgcgaga acacccgggc
     3241 catagaccac acccgtgatc gcgatcacgg cgaagaacag cagagacgcc ggcacgacat
     3301 acttgaccca ttcgcgattg cgttcgatcc agtcgcccag cacgtgtccc ttgagttccg
     3361 tgttttctat cggacggaag ttctccactt cgaaccttac gcgccgcgct cccgggtcat
     3421 tgcgt
//
LOCUS       DATGBK010000821         2504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_287776, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000821 DATGBK010000000
VERSION     DATGBK010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287776"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1895
                     /locus_tag="VKJ77_11470"
     CDS             <1..1895
                     /locus_tag="VKJ77_11470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HMC45931.1"
                     /translation="GIIVGPHAAGIAPDSERAQHLAEFGVVFLMFSIGLEFSLSKLRS
                     MRRIVFGLGASQVAGTIALALLFGWIANFWTGMSWEASIALGGALSMSSTAIVSKMLA
                     ERLELESEHGRNIFGVLLFQDLAVVPLLIIIAAFGNGNSKELAFWLALAAIKIVVALT
                     VLLFIGQKFMTRWFNIVARRRSQELFMLNLLLVTLGAAFITDKFGLSLALGAFIAGML
                     IAETPYRHQVEEDIKPFRDVLLGLFFVTTGMLLNPRVIWEHPFLVASFFFLPILLKAV
                     MITGLARLFGSPPGVAMRTGLNLAQAGEFGFVLLNLILDKHLVEPVLLQAILSSMLLS
                     MLAAPFIIQNADRIVLRLSSTEWLRQSLQMTRIATQSIKQSGHVIICGYGRAGQNLAR
                     MLEHEGLSYVALDLDPDRVAAAAAAGESVVYGDAGRREALVAAGIHRAATIAITFANT
                     PSALRVLHSIHELEPTLPTIVRTVDDADLEKLIASGATEVIPEIVEGSLMLASHTLVL
                     MGVPMRRVVRRVEEMRDERYSMLRGYFHGADEDDDERREQVRLQSVPVDENADAVGRT
                     LDELGLVGDGVEVTAIRRHGIRGVAPDPDTKLRASDIVVLRGLPEALQQAEERLSRNR
                     RAGAIA"
     gene            1918..2484
                     /locus_tag="VKJ77_11475"
     CDS             1918..2484
                     /locus_tag="VKJ77_11475"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HMC45932.1"
                     /translation="MSEFAAPSVSNPAGFIRERIRTVLDWPQPGVQFRDITPVLQDRR
                     ALRTLIDLLVQRYIDARIDTIAGLDARGFIIGPILAYELSLGFVPIRKKGKLPFRTLS
                     QSYELEYGSATVEIHEDACKPGERVVLVDDLIATGGTMMAGKMLLERLGAVVVEGTAI
                     IDLPELGGSKLLRESGLPLYTVCEFSGH"
BASE COUNT          418 a          702 c          831 g          553 t
ORIGIN      
        1 tcgggattat cgtcggaccg cacgccgccg gcatcgcgcc ggatagtgaa cgcgcgcagc
       61 atctggccga attcggggtt gtgttcctga tgttttctat cgggcttgaa ttctcgttat
      121 cgaaattgcg gtcgatgcga cggattgtgt tcggtctcgg cgcgagccag gtggccggga
      181 cgattgcgct ggcgttgctg ttcgggtgga ttgcgaattt ctggacgggc atgtcgtggg
      241 aggcgagcat cgcgctgggc ggcgcgttgt cgatgtcgtc caccgccatc gtttccaaaa
      301 tgctggccga acggcttgaa ctggagtccg agcatggccg caacatcttc ggcgtgctgc
      361 tgttccagga tcttgcagtg gtgccgctgc tgatcatcat tgccgcgttt ggcaacggca
      421 actcgaagga gctggcgttc tggctcgcgc tcgcagcgat caagatcgtg gtcgcgttga
      481 cggtgctgct gttcatcggc cagaagttca tgacgcgctg gttcaatatt gtcgcgcggc
      541 gtcgctcgca agagctgttc atgctgaacc tgctgctggt cacgctgggc gcggcgttca
      601 ttaccgataa attcggcctc tcgctcgcgc ttggcgcgtt tatcgcgggt atgttgatcg
      661 cggaaacccc ttaccgacat caggtggaag aggacatcaa gccgttccgc gacgtgctgc
      721 tcgggctgtt tttcgtgacc acgggcatgc tgctcaatcc gcgcgtgatc tgggaacacc
      781 cctttctcgt ggcgtcgttt ttcttcctgc cgatcctgct gaaagccgta atgatcaccg
      841 gcctcgcgcg gctgttcggc tcgccgccgg gggtggcgat gcgtaccggc ctcaacctcg
      901 cgcaggccgg cgaattcggt tttgtgctgc tgaacctgat cctcgataaa catctggtcg
      961 agccggtgct gctgcaagcc atcctttcgt cgatgctgct ttccatgcta gccgcgccgt
     1021 tcatcatcca gaacgccgac cggatcgtgc tgcggctttc atccactgaa tggttgcggc
     1081 agtcgttgca aatgacgcgc attgcgacgc aaagcatcaa gcagagtggc cacgtgatca
     1141 tctgcggcta cggccgggcg gggcaaaatc tggcgcggat gctggaacac gaggggttgt
     1201 cgtacgtcgc gctcgacctg gaccccgatc gcgtggcagc ggcggcggcg gcgggtgaaa
     1261 gcgtggtgta cggcgatgcc gggcggcgcg aggcgctggt cgcagccggc atacatcgcg
     1321 cggccacgat cgcgattacc ttcgcgaaca cgccgtccgc gttgcgcgtg ctgcacagca
     1381 tccacgagct ggagcccacc ttgcccacca tcgtgcgtac tgtcgatgac gctgatctcg
     1441 aaaagctgat tgcgtcgggt gcgacggaag tgattccgga aatcgtggaa ggaagtttga
     1501 tgctggcgtc gcatacgctg gtgctaatgg gcgtgccgat gcggcgcgtg gtccggcgcg
     1561 tggaagaaat gcgcgacgag cgttacagca tgctgcgcgg ttattttcac ggcgcggatg
     1621 aggacgacga tgaacggcgc gagcaggtcc ggctacaatc ggttcccgtc gatgaaaacg
     1681 ccgacgctgt cggccgtacg ctcgacgagc tcgggctggt gggcgacggt gtggaagtga
     1741 cagcaattcg tcggcatgga attcgcggcg tggcgcctga tcctgacacc aagctgcgtg
     1801 cgagcgacat cgtggtgctg cgcggtttgc ccgaagcgtt gcagcaggcg gaagaacggc
     1861 tgtcgcgcaa tcgccgtgcg ggcgcgatag cctgacgttt tccaggagac atcattcatg
     1921 tctgaattcg cagcgccctc tgtgtccaat cctgccggtt ttatccgcga gcggattcgc
     1981 actgtgctgg actggccgca gcccggtgtg cagttccgcg atatcacgcc ggttttgcag
     2041 gatcggcgcg cgttgcgtac gctgatcgac ctgctggtgc agcgctatat agatgcacga
     2101 atcgacacga tcgccgggct cgatgcgcgt ggttttatca tcgggccgat tctcgcttac
     2161 gaattgagcc tgggtttcgt gccgatccgc aagaagggca agttgccgtt caggacgctg
     2221 tcgcagtcgt atgaacttga atatggcagc gcgaccgtcg aaattcacga agatgcgtgc
     2281 aagccgggcg agcgcgtggt gctggtcgac gacctgattg cgactggcgg cacgatgatg
     2341 gccggcaaga tgttgctcga acggcttggc gcggtggtgg tcgaggggac tgcgattatc
     2401 gatttgccgg agcttggcgg gtcaaaactt ctgcgcgaat cgggtttgcc gctttatacg
     2461 gtctgcgaat tcagcggcca ctaacttctc cgaattctct gccc
//
LOCUS       DATGBK010000822         2826 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218458, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000822 DATGBK010000000
VERSION     DATGBK010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218458"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            54..776
                     /locus_tag="VKJ77_11480"
     CDS             54..776
                     /locus_tag="VKJ77_11480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875828.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC45933.1"
                     /translation="MSLVQLLGFGEQGWGGTLLLALLMTVLLTIAALAVGAVFGAMVA
                     AAKLSRSRTLRIIGDAYTTLFRGIPELLIIYLFYFGGSSVMTAVGHFFGADGFIGVPP
                     FVVGALAIGLISGSYQAEVYRSAVLAVSRGEIEAARAIGMPTATLWRRVLIPQVIRFA
                     LPGIGNVWQLSLKDSALIAVTGLAELMRTSQVAAGSTHQYFTFYMVGGALYLILTSLS
                     NRVFDRAEARIGRSFRGTLARR"
     gene            817..1587
                     /locus_tag="VKJ77_11485"
     CDS             817..1587
                     /locus_tag="VKJ77_11485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC45934.1"
                     /translation="MNIDFEFLGDTLSKLLAAVPTTLGLFFASLIVGGLLSLVIVAMR
                     VSPNWALNRFARGYILVFRGSPLLIQMFLVYYGLGQFPAVRESFLWPLLRVPYVCAIV
                     SLALCTAGYTAEIIRGGLQSVPHGQIEAALAVGMSRWTVLRRIIAPITLRYALPAYST
                     EAVLLVKSTALASLVTVWDVTGVAQQIIQRTYRTMEVFICAAAIYLVLNFIIVRALGM
                     LEKKLSPHLRDRNATAPKKSSQATLKAATVPDSQHIDS"
     gene            1607..2398
                     /locus_tag="VKJ77_11490"
     CDS             1607..2398
                     /locus_tag="VKJ77_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC45935.1"
                     /translation="MNVSTSIALSATNIHKSFGDAHVLKGISLDAHEGDVISILGASG
                     SGKSTFLRCINMLETPDDGEVKLAGEAIEMKRGRDGRLQPGNRKQVDRIRSQLGMVFQ
                     SFNLWSHMTVMQNVIEGPLRVQKRTRAECVEEAEQLLTKVGLYEKRDAYPAHLSGGQQ
                     QRVAIARALAMHPKVMLFDEPTSALDPELVGEVLRVMRALAEEGRTMLVVTHEMGFAR
                     HVSNRVMFLHQGQVDAEGTPDDLFNGRCSERFQQFVSSHHSRAAN"
     gene            2513..>2826
                     /locus_tag="VKJ77_11495"
     CDS             2513..>2826
                     /locus_tag="VKJ77_11495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HMC45936.1"
                     /translation="MCIDKPLDWRGVAQVANGAKLVLSPGARSRIDHARSLVEQIVER
                     RIRAYGVNTGVGALCNVVVSPSEQRALSRNILMSHSVGVGEPLRREETRAIIAAAVNN
                     FA"
BASE COUNT          495 a          844 c          883 g          604 t
ORIGIN      
        1 cgcacgcctg taagcgggtg cgctcgacga cgtgtcaccg ttggagataa aagatgagtc
       61 tcgttcaact actcggcttc ggcgaacaag ggtggggcgg cacattgctg ctcgcgcttc
      121 tcatgaccgt attgctgacg atcgccgcgc tcgcggtagg cgcggtgttc ggcgcaatgg
      181 tcgccgccgc aaaactgtcg cgcagccgca cgctaagaat tatcggtgat gcctacacca
      241 cgctctttcg cggcattccc gagctgctga tcatctatct cttctacttt ggcggctcgt
      301 cggtgatgac tgccgtcggt cacttttttg gtgccgacgg cttcattggc gtgccgcctt
      361 tcgtggtcgg cgcgctcgcc atcggcctga tttccggatc gtatcaagct gaggtgtatc
      421 gctcggctgt gctcgcggtg tcgcgtggcg agatcgaggc ggcgcgggcc atcggcatgc
      481 cgacggcaac gttatggcgg cgcgtgctga ttccgcaagt catccgtttt gcgttgccgg
      541 gtatcggcaa cgtatggcaa ttgagtctca aggattcagc gttgatcgca gtgactggac
      601 tcgccgaact gatgcgtacg agccaggtcg ccgccggatc gacgcatcaa tacttcacgt
      661 tttatatggt tggcggggcg ctgtacctga tcctcacgag cctgtcgaac cgcgtcttcg
      721 accgcgccga agcgcgtatc ggccgatcat ttcgcggcac gctcgcgcgc cgctgagcca
      781 ctgagccatt aatactttcc ccaagcgaat ccgaccatga atatcgattt cgaatttctc
      841 ggcgatacgt tgtcgaaact gttagccgcc gtccccacca cgcttgggct gttcttcgcc
      901 tcgctgattg tgggcggcct gctttctctt gtcattgtcg cgatgcgggt gagcccgaac
      961 tgggcgctca accgtttcgc gcgtggctac atcctggtgt ttcgcggctc tccgctgctg
     1021 atccagatgt tccttgtgta ctacggcctg ggtcagttcc cggccgtgcg cgagagtttc
     1081 ctctggccgc tgctgcgtgt gccgtatgtg tgcgcgatcg tctcgctcgc gttgtgcacg
     1141 gccggatata ccgccgagat cattcgcggc ggcctgcagt cggtaccgca cggacagatc
     1201 gaagcggcgc tcgcggtcgg catgtcgcgc tggaccgtgt tgcgccggat catcgcgccg
     1261 atcacgctgc gttacgcatt gccggcgtac tcgactgaag ccgtactgct cgtcaagtcg
     1321 acggcactgg ccagtcttgt cacggtgtgg gacgtgacgg gtgtcgcgca gcagatcatc
     1381 cagcggacct accggacgat ggaagttttc atctgcgcgg ccgctatcta cctcgtgctg
     1441 aatttcatca tcgtgcgggc gctgggcatg ctcgaaaaga agctctcgcc gcacctgcgt
     1501 gatcgcaatg ccactgcgcc gaagaagagt tcacaggcca cgctcaaggc ggcaacagtc
     1561 cccgacagcc agcacatcga ttcctgaatc caagggagaa aacctcatga acgtaagcac
     1621 ctccattgcg ctgtccgcga ccaacatcca taagtctttc ggcgatgcgc acgtgctcaa
     1681 gggcatttcc ctcgacgcgc acgaaggcga tgtgatctcc atcctcggcg cgagcgggtc
     1741 cggcaaaagc accttcctgc gctgcatcaa catgctggaa acgcccgatg acggcgaagt
     1801 gaaactcgcg ggcgaagcga tcgaaatgaa acgtggacgc gatgggcgcc tgcagccggg
     1861 caaccgcaaa caggtcgacc ggattcgttc gcagctcggc atggtgttcc agagtttcaa
     1921 tctctggtcg cacatgacgg tgatgcagaa cgtgatcgaa gggccgttgc gcgtgcagaa
     1981 acgcacgcgt gcggaatgcg tagaagaagc ggagcagttg ctgacgaagg tcggtcttta
     2041 cgagaagcgc gatgcgtacc ccgcgcatct gtcgggcggc cagcaacagc gtgtggccat
     2101 tgcgcgcgcg ttggccatgc accccaaggt catgctcttc gatgaaccca cgtccgcgct
     2161 cgatccggaa ctggtcggtg aagttttacg cgtgatgcga gcgctagcgg aggaaggccg
     2221 gaccatgctg gtcgtcacgc atgagatggg tttcgcgcgg cacgtgtcga atcgcgtgat
     2281 gttcctgcac cagggacaag tcgatgccga aggcacgccc gacgacctgt tcaacggccg
     2341 ctgctcggaa cgtttccagc agtttgtgtc gagtcatcat tcccgtgctg ctaactagat
     2401 caaagaggtt gatgtgcttg ccagttcctt tttaccgacg ccatcgattg atcctattgt
     2461 catcggcgcg gacctgagtg ccggttgcgg caacgagcgc tcgccggctt cggtgtgtat
     2521 cgacaagccc ctcgactggc gcggtgttgc ccaggttgcg aatggcgcga agctggtttt
     2581 atcgccggga gcacgctcgc ggatcgacca tgcgcgctcg ctggtcgaac agatcgtcga
     2641 gcgccggatt cgcgcgtatg gcgtgaacac cggcgtgggc gcgctgtgca acgtggtcgt
     2701 gtcgccgtcg gaacagcgcg cgttgtcgcg caacatcctg atgagtcact cggtcggcgt
     2761 gggcgagccg ctgcggcgtg aggaaacgcg cgcgatcatc gcggctgctg tgaacaactt
     2821 cgcgca
//
LOCUS       DATGBK010000823         1619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_172048, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000823 DATGBK010000000
VERSION     DATGBK010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172048"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..827
                     /locus_tag="VKJ77_11500"
     CDS             <1..827
                     /locus_tag="VKJ77_11500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC45937.1"
                     /translation="WGTALSILSLNSPAVQSIPDPQTAIQVAKRANDILAEQIQRHPK
                     RFGGFAALPMQDPEAAARELERCVTQLGFHGFLVNGFSQVGDEHTVAYYDAPQFADFW
                     NHAAALGKPFYMHPRDPLPSREPIYDGSPWLTGPTWAFAAETSVHALRLMSSGLFDRH
                     PALQMILGHFGEGIPFNVWRIDHILRKGRRGMPCSREIGDYLRENVYITTSGNFRTPT
                     LLSTLLEVGSDRIMYSVDYPFEKHEHAARWFDNCEISENDRRKIGRDNAQRLFGLK"
     gene            858..>1619
                     /locus_tag="VKJ77_11505"
     CDS             858..>1619
                     /locus_tag="VKJ77_11505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006159365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45938.1"
                     /translation="MNTQSAAVSDHSSSTPTVKTSEIIDIAALIDSHPLSRFQKWVMV
                     LVGLSVVMDGFDVQAMGFVAPSIIREWGVSRAAMGPVFGTSLIGMMLGSLILGPVADR
                     IGRRPVLIGATLFLSICMFATSFASTLPQLLVLRFITGLGLGGIMGNAVALVSEYSPS
                     RKRATLMMWVSCGFTGGAVLGGIASAALIPAAGWRSVFLFGGAVPLAIAIAMLAYLPE
                     SMQFLVLRQRGLDRVSHWLGKISPLVESGAPYRYLV"
BASE COUNT          302 a          495 c          472 g          350 t
ORIGIN      
        1 aatggggcac ggcgttgtcc atcctgtcgc tcaactcgcc cgccgtccag tctatccccg
       61 atccgcaaac ggcaatccag gtcgccaagc gcgccaacga cattctcgct gagcagatcc
      121 aacgtcatcc caaacgcttt ggcggtttcg ccgcgttgcc gatgcaggac cccgaagccg
      181 ccgcacgcga actggagcgc tgcgtgacgc aacttggttt ccacggtttc ctggtaaatg
      241 gtttttccca ggtcggtgat gagcacaccg ttgcttacta cgatgccccc cagttcgccg
      301 atttctggaa tcacgcggca gctcttggca agccctttta tatgcatccg cgcgatccgc
      361 tgccgagccg cgaacctatc tacgacggca gtccctggct gacaggaccg acctgggcat
      421 tcgctgcgga aacgagcgtg cacgcgctgc gtctgatgtc gagcggcctg ttcgaccggc
      481 atcccgcatt gcagatgatc ctcggccatt tcggagaagg cattcccttc aacgtctggc
      541 gcatcgatca cattctgcgt aagggccgcc gcggcatgcc atgctcccgt gagatcggcg
      601 actacctccg cgagaacgtc tacatcacca ccagtgggaa tttccgcacg ccgacgctcc
      661 tgtcgaccct gctcgaagtg ggtagcgacc gcatcatgta ttcggtcgat tacccgttcg
      721 aaaagcatga acacgccgca cgatggttcg acaactgcga gatcagcgag aacgatcgtc
      781 gcaagattgg acgcgacaat gcgcaacgtc tcttcggcct gaagtagaaa gcaatgcagc
      841 agaggtccgg agccacgatg aacacacaat cggctgcagt atccgatcac agcagtagca
      901 cgccaacggt taagacaagc gagataatcg atattgccgc cctcatcgac agtcatcccc
      961 tcagccgctt ccagaaatgg gtgatggtgc ttgtgggcct ctcggtcgtg atggatggct
     1021 ttgacgttca ggcgatgggt ttcgtcgcac cgtcgatcat tcgcgaatgg ggcgtttccc
     1081 gcgcagcgat ggggccggtt ttcggcacga gcctgatcgg catgatgctt ggatcgctga
     1141 tcctgggtcc ggtcgcagac cggatcggac ggcggccggt gttgatcggt gcaacacttt
     1201 ttctttccat ctgcatgttc gcgacctcgt tcgcgtcaac gctgccgcaa ctcctggtgt
     1261 tacgtttcat cacgggcctg gggcttggcg gcatcatggg caacgcggtt gcactagtca
     1321 gtgaatacag tccaagccgt aaacgggcaa cactgatgat gtgggtctcg tgcggcttca
     1381 cgggcggcgc agtactcggt ggtatagcat cggcggcgct gattccggcg gcaggatggc
     1441 ggtccgtgtt cctgtttggc ggcgccgttc cccttgccat tgcgatagcg atgctcgcct
     1501 acctgccgga atcgatgcag ttcctcgtac tgcgccagcg cggtctcgat cgggtaagtc
     1561 actggcttgg caagatctct ccgctcgtcg aaagcggtgc gccgtatcgt tatctcgtg
//
LOCUS       DATGBK010000824         1585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218475, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000824 DATGBK010000000
VERSION     DATGBK010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218475"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(348..1388)
                     /locus_tag="VKJ77_11510"
     CDS             complement(348..1388)
                     /locus_tag="VKJ77_11510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015931502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HMC45939.1"
                     /translation="MGKSITDLSSVTTVGLDLAKLVFQVHCVDASGRVVVAKAIKRNK
                     LLEFFASLPPCLVGIEACGSAHHWARELIKLGHDARMMPPAYVKPYVRRQKNDATDAT
                     AICEAVTRPSMRFVVIRSLENQAALMRHKAREMLVSQRTQLLNGLRGHLTEVGVIAAQ
                     GPRHARELAGLIEACDENIPIEVREALAELVHQLHRLDEAIARLDRTIVKIARKDETA
                     RRLMSIPGFGPITASAMAASVQDASSFAGPREFAAFLGLTPKQNSSGGKQRLGRISKM
                     GNRNLRKLLVVGAHAVLFHRKRHTDPLRMWAKKLMEKKPFKLVAVALANKMARIAFAI
                     LRGKTTYREIPA"
BASE COUNT          291 a          524 c          461 g          309 t
ORIGIN      
        1 cggcgacaat ttccgaccag cgtgagccaa cggacgccga gaagcagcaa tttgagcggc
       61 attgtcatgt ctggatggcg cccgctgatc aagggttatt ttgcggtggc gcgatgatcg
      121 tgggtgcggt catgtcttcg gcctgtcgat gcggggcaat ggctccgcgg ccctgatgtt
      181 gtccgctgat ccgttgcccc tatcacgttg gcgcgcttga ctgcgcagac aaagccacgg
      241 gcttcaggat caatccgctt tcctgcgcat cacctcttgg tcaccctcga ttcctatgct
      301 gccttggctt tttgacgagc cttggccaca aaccctgccg gcgcccgtta cgccggaatt
      361 tcccgataag tcgtcttgcc tcgcaggatc gcgaaggcaa tgcgcgccat tttgttggcg
      421 agcgctacgg cgacgagttt gaagggcttc ttctccatga gcttcttggc ccacatccgc
      481 agcgggtccg tgtgccgctt gcggtgaaac agcacggcat gcgcccccac gacgagcaat
      541 ttgcgcaagt tccgattgcc catcttcgaa atgcgcccca gccgctgctt gccgcccgaa
      601 gagttctgct tgggcgtcag cccgaggaag gcggcgaact cgcgtgggcc ggcgaagctc
      661 gacgcatcct gaacgctcgc cgccatcgcc gaggcggtga tcgggccgaa gccgggaatg
      721 ctcatcagcc ggcgcgccgt ttcatccttc cgcgctatct tcacgatcgt tcggtcgagc
      781 cgcgcaatcg cttcatccag gcggtgcagt tgatgaacga gttccgccag cgcctcgcgc
      841 acttcaatcg gaatgttctc gtcgcaagcc tcgatcagcc cggccagctc gcgagcgtgt
      901 ctcggcccct gcgccgcgat cacgccaacc tcggtcaagt ggccgcgcag cccattgagc
      961 agctgcgtgc gttgcgaaac cagcatctcc cgcgccttgt gacgcatcaa cgccgcctgg
     1021 ttctccagcg agcgtatgac gacaaagcgc atcgaaggcc gcgtcaccgc ctcgcaaatc
     1081 gccgtcgcgt ccgtcgcgtc gttcttctgc cggcgaacat acggcttcac atacgccggc
     1141 ggcatcatcc gtgcgtcatg tccaagcttg atcaactcgc gcgcccagtg atgcgccgac
     1201 ccgcaggcct cgatcccaac caggcaaggc ggcaacgaag cgaagaactc cagcagcttg
     1261 ttgcgcttga tcgccttggc cacgacaacg cgtcccgacg cgtcgacgca gtgaacctga
     1321 aagacgagtt tggccagatc gagcccaacg gtcgtgacag aagacaaatc ggtgatagac
     1381 tttcccatgg acggcgctcc tttaaacggt tgccctaacg acaaccattt tggcacagct
     1441 cttaattgag ccagatgccg gtgcgggcgc cgtccacacc atcacgtcgc cgaacaagga
     1501 acgcgatgag gttgcggcag tgcattttca ggcgaccgca acggccgcac gccacgtact
     1561 catcgcggcg gcgcagaagc ttcgg
//
LOCUS       DATGBK010000825         1748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_287804, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000825 DATGBK010000000
VERSION     DATGBK010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287804"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1078)
                     /locus_tag="VKJ77_11515"
     CDS             complement(<1..1078)
                     /locus_tag="VKJ77_11515"
                     /inference="COORDINATES: protein motif:HMM:NF037667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HMC45940.1"
                     /translation="MFALAGLDASAQTATPEAGVPLDLATRRAAIVDDLRYELALSVP
                     DRTSEPVSGTVEIRFQLADASAPLVVDFDVSREHVHAVQANGHSIDFGFINGHLVIPA
                     TALSIGANTLQIEFDAGDPPLNRHADFLYTLFVPARARQAIPCFDQPDLKGRWTVRLE
                     HPAHWQSVANGREIERTQAGGRTRVRFAETPLLPTYLVAFVAGEFKVETGVRNGRTMR
                     FFHRETDTEKVARNAGIIFDLHATALEVSERYTAIPYPFDKLDFVAIPAFPFGAMEHA
                     GAIAYRSADLLLDQSASQSALLNRAHVIAHEVAHAWFGNLVTMRWFDDVWTKEVFANF
                     VAAKIVTPSFPAMNHDLRFFLDHYP"
BASE COUNT          327 a          520 c          554 g          347 t
ORIGIN      
        1 cagggtagtg gtcaaggaag aatcgcagat cgtggttcat cgccggaaac gaaggcgtca
       61 cgatctttgc cgcaacgaaa ttggcgaaca cctccttggt ccaaacgtcg tcgaaccagc
      121 gcatggtgac cagattgccg aaccacgcat gagccacctc gtgcgcgatc acatgagccc
      181 tgttcagcag cgcggactgc gaggccgact ggtcgagcag cagatcggca gacctgtagg
      241 cgatcgcgcc tgcatgctcc attgctccga acggaaaggc ggggatggcg acgaagtcga
      301 gcttgtcgaa cgggtacggg atcgcggtgt accgctcgga gacctcgagc gccgtggcgt
      361 gaagatcgaa gatgatgccg gcgttgcgcg ccaccttctc cgtgtcggtc tcgcggtgga
      421 agaagcgcat cgtccgaccg ttgcgcacgc cggtctcgac cttgaactcg ccggccacga
      481 aggcgacgag gtacgtaggc agcagcggcg tctcggcaaa gcgtacacgg gtgcgaccgc
      541 ccgcttgtgt gcgttcgatc tcgcgaccat tcgcgaccga ctgccaatgg gcgggatgct
      601 cgagacggac ggtccaccgg cccttcaggt ccggctggtc gaagcaggga atcgcctgcc
      661 gcgcgcgcgc cgggacgaac aaggtgtaga ggaagtccgc gtgccggttc agcggcggat
      721 cgccggcgtc gaattcgatc tgcaaggtgt tcgcgccgat cgaaagtgcc gtggcgggaa
      781 tgacgaggtg cccgttgatg aacccgaaat cgatcgagtg gccgttcgct tgcactgcat
      841 ggacgtgctc ccggctcaca tcgaagtcga cgacgagcgg ggccgacgcg tccgccagtt
      901 ggaatcgtat ttcgacagtg cccgataccg gttcactggt ccggtccggc accgagagcg
      961 ctagttcgta acgcaggtca tcgacgatgg cggcgcggcg ggtggcgaga tcgaggggca
     1021 cgcccgcctc cggcgtcgcg gtctgggctg aggcgtcgag tccggcaagc gcgaacaacg
     1081 caccgaataa gccattcctc cattgaattc tcattgaagg ccccgttgaa gtaagcggcg
     1141 acgctatgct agcgacacgg atatcgaatg tccatcatct gccccccgtc gtgtcgggag
     1201 atttcccttg ttgcgcgcga ccgaagtaag aggtaccctt tagttgtaat gaaccgcgct
     1261 cggcatatat ttttcgctct gacgttgctg ctctcgcagt atgcagcgca gatgcattcg
     1321 ctgtcgcatt taggtcacga gctcgcggtt gccgagcatg gcgaaagaag tgccccgcca
     1381 cttggccatg cgatcgaaaa gtgcatcgcg tttcacgcgc ttgacggcac catatcgaat
     1441 agcagcgcgg ccccagggcc attttgcgtc gctataccgc ccgccgcaca atttgcggtt
     1501 tccccgccgt ttcctccgcg gatcgtattc gattcgcggg cccctcccgc actctcttag
     1561 gcgttccagg actcggaact gcttcgcttg agcgaagtgg ttgtgctcgc gagctccttg
     1621 cggatgactc gcatttggat gccatggagg tgcgtgatgt tcaggaaagg tgcgtacacg
     1681 cttgccgtat cggcagcatt tggttttttt cagtccactg ctttcgcaat tgaagccctc
     1741 gctcaagc
//
LOCUS       DATGBK010000826         1548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_264678, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000826 DATGBK010000000
VERSION     DATGBK010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264678"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..913)
                     /locus_tag="VKJ77_11520"
     CDS             complement(<1..913)
                     /locus_tag="VKJ77_11520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009771433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HMC45941.1"
                     /translation="MRSDVIRVYKTVHTWTGIVAGLALFIAFYAGAVTMFKDTLNEWV
                     TPPSAHAEVFPLAQAPAVIEQTLAAHPAARRQFTLRIEPAGAASLSWREPGKPQRFTA
                     TLDANGKLETHARGASNAASFIDILHMTAGIPGGFDVGMGVMAVVSLLYGLALVSGVI
                     VLLPSLIKDLFALRVGKNLKRMWLDAHNVVGILSLPFHVVMALSVVAFGLSDYIFSVQ
                     DRVIYGGTLSATVKAQNPYYAKAPVVPGAPATLVSPLQIVAAVKQHAPEFEPVELSYR
                     GAGAPGATVFVSGDDPRYLARSGGFALL"
     gene            complement(919..1230)
                     /locus_tag="VKJ77_11525"
     CDS             complement(919..1230)
                     /locus_tag="VKJ77_11525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009857485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45942.1"
                     /translation="MKTRPAKERNTLSRDWLSKTLAGVIGGFGLAIAASGLLAYLTPG
                     ALDEQNKFQVAMWLVPPVWIGVMSASFMFRTGLRAWVWLGGANAFGFVMLALARHFFI
                     R"
     gene            complement(1233..>1548)
                     /locus_tag="VKJ77_11530"
     CDS             complement(1233..>1548)
                     /locus_tag="VKJ77_11530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45943.1"
                     /translation="HLCKLSMQDFFMPASVLFAIAGALAFYLAAPGQRWLRAPLSPRL
                     FRLLAALLSILAFVIGASRLHPATSLAIVFTAAMASLTACPFIGVLLDRVRVGGASGV
                     TR"
BASE COUNT          346 a          529 c          442 g          231 t
ORIGIN      
        1 ccagcagcgc aaatcctcca ctgcgcgcca gataacgcgg atcatcgcca ctcacaaata
       61 ctgtcgcgcc cggcgctccc gctccccgat aactcaactc caccggttcg aattccggcg
      121 cgtgctgctt caccgcggcc actatctgaa gcggtgagac aagcgtcgcc ggagcgcccg
      181 gcaccacagg cgccttcgcg taatacgggt tctgcgcctt cacggtagcg ctaagcgtgc
      241 cgccatagat cacgcgatcc tgcactgaaa agatatagtc acttaagccg aacgcgacaa
      301 ccgataacgc catcaccaca tgaaacggca agctcagaat gcccacgacg ttgtgcgcat
      361 cgagccacat ccgcttgagg ttcttgccca cgcgcaacgc aaacagatcc ttgatcaggc
      421 tcggcagcag cacgatcaca ccggacacca gcgcgagccc gtaaagcagc gacaccacgg
      481 ccatcacgcc catgccgaca tcgaaaccgc ctggaatgcc ggccgtcata tgcaggatat
      541 cgatgaaact tgccgcgttt gacgcgccgc gcgcatgcgt ttcgagtttg ccgttggcat
      601 cgagcgtggc ggtgaaacgc tgcggctttc cgggttcgcg ccacgaaaga ctcgccgcgc
      661 ccgcaggttc gatccgcaat gtgaactggc ggcgcgccgc cggatgggcg gccagcgtct
      721 gctcgataac ggcaggcgcc tgggccagcg ggaaaacctc ggcatgcgcg gacggcggcg
      781 tgacccactc gttcagcgtg tccttgaaca tggtcaccgc gccggcatag aacgcgataa
      841 aaagcgcaag accggcaaca atgcccgtcc acgtgtgaac cgtcttgtag acgcggatga
      901 cgtcgctgcg catgggggtt atcgaatgaa aaaatgacgg gcgagcgcga gcatcacgaa
      961 accgaacgcg ttcgcgccgc ccagccagac ccacgctcgc agcccggtcc ggaacatgaa
     1021 actggcgctc atcaccccta tccacacggg cggcacgagc cacatggcga cctggaactt
     1081 gttctgttca tcgagagcgc cgggtgtcag gtaagccagc agtccgctcg ccgcaatcgc
     1141 aagcccgaac cctccgatca cacccgccag cgtcttcgac aaccagtccc gcgacaacgt
     1201 gttgcgttct ttcgccggcc tggtcttcac ggtcaacgcg tcacccccga agcgccaccc
     1261 acccggaccc gatcaagcaa cacgccgata aacgggcacg cagtcaggct cgccatggcc
     1321 gccgtgaaca cgatggcaag cgaggttgcc gggtgcagcc tgctcgcgcc aataacgaac
     1381 gccagaatgc ttaacagtgc cgcgagcaat ctgaacagcc gcggcgacaa cggtgcgcgc
     1441 agccagcgct ggcccggtgc ggccagataa aacgcgagcg caccggcgat cgcgaacagc
     1501 accgatgccg gcatgaaaaa atcttgcatg gagagcttgc agaggtgc
//
LOCUS       DATGBK010000827         1530 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_125638, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000827 DATGBK010000000
VERSION     DATGBK010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125638"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..532
                     /locus_tag="VKJ77_11535"
     CDS             <1..532
                     /locus_tag="VKJ77_11535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017329028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC45944.1"
                     /translation="FSTGKSDGFGVSYVNGPFTAAATYSNEHNRSVSVSTLGLATFQN
                     QPAATYTADTVENMGAGASYTLGNVLLHALYTRVKLESNGMSNLFQSYDAGATWKMVP
                     DNWISGGAATTTFAGARYTQFEIGDIYLLSKMTQVYVNALYERASSGANAALFTAGVS
                     SNRNQVAVLAGIHHAF"
     gene            complement(601..1512)
                     /locus_tag="VKJ77_11540"
     CDS             complement(601..1512)
                     /locus_tag="VKJ77_11540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006766131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC45945.1"
                     /translation="MPKQPTTEKTSALDGQNDAAESTEDAAAGASYLVPGLERGLRIL
                     AEFSAREPILGAPELSKRIGIPRTTTFRLLQTLESLGFLERVNDDRNFRLGVAVLRLG
                     FEYLSSLELTDFAAPILERLRDATGLNAHLLIRDQRDVVFVAKAQSHDAMFSSVRVHV
                     GTRFPAHATTHGHVLMSDLGLPQLRVLYPEKRLEQFTDRTPGTVSELEERVRACASQG
                     YGSSEGAFERGISVVTAPVRERSGSIVAAVTVTVPRSEFGTAREKDDLVTAVCGASIE
                     LSMRMGYRPYDADPTAQLAARGTEKAE"
BASE COUNT          292 a          471 c          461 g          306 t
ORIGIN      
        1 cttctccacc ggcaagtcgg acggattcgg cgtgagttac gtgaacggtc cctttacggc
       61 ggcggcaacc tattcgaatg aacataaccg gtcggtctct gtttcgacgc ttgggcttgc
      121 gacctttcag aaccagccgg ccgccaccta taccgccgat acagtcgaga acatgggcgc
      181 aggtgcttcc tatacgctcg gcaacgtgct tttgcacgcg ttgtacacgc gcgtgaagct
      241 ggaatcgaat ggcatgtcca acctattcca aagctacgat gcgggcgcga cgtggaagat
      301 ggtgccggat aactggatct cgggcggtgc agccacaaca acattcgcag gcgctcgtta
      361 tacgcagttc gagattggtg acatctatct gctgtcgaag atgacgcagg tgtatgtgaa
      421 tgcgttgtac gagcgcgcca gctcaggggc gaatgccgcg ctgttcacgg cgggtgtatc
      481 gagtaaccgc aatcaggtgg cggtgctcgc cgggattcat cacgcgttct aaagcttgct
      541 cgaaggcacg tccaagctcg gccgccaaga ggcgtcgcgc acctacgcga cgcggctctg
      601 tcactccgct ttttcggttc cgcgtgcagc caactgagcg gtggggtcgg cgtcgtaggg
      661 ccggtatccc attcgcatcg atagttcgat cgacgcgccg cacacggcgg taacgaggtc
      721 gtccttctca cgcgccgttc cgaattccga acgcggcacc gtgaccgtca ctgcagcgac
      781 tatgctgccc gagcgttccc gcaccggcgc cgtcaccacc gagattcccc gctcgaatgc
      841 tccttcgctt gagccatatc cctgcgatgc acacgcacgc acccgttcct ccagttcgct
      901 gactgtgccc ggcgtccggt ccgtaaactg ctcgagtcgt ttttccggat agagcacgcg
      961 aagttgcggc aaaccaagat cgctcatcag cacgtgcccg tgcgtggttg catgcgcggg
     1021 aaaccgcgtg ccgacatgca ccctcaccga gctgaacatg gcgtcgtgac tctgggcctt
     1081 ggcgacgaac accacatcgc gttgatcgcg gataagcaag tgggcattca ggccggtagc
     1141 gtcccgaaga cgttcgagga tcggcgccgc gaagtcagtg agctcgagcg aactcaggta
     1201 ttcaaatcca agccgcagca ccgcgacgcc cagcctgaaa ttgcgatcgt cattgacgcg
     1261 ctccaggaaa cccagcgatt cgagcgtctg cagcaatcgg aatgtcgttg tgcgcgggat
     1321 gccgatacgc ttcgacaatt caggcgcacc gaggatcggc tcgcgagcgg aaaactccgc
     1381 aaggatccgc agtccgcgct cgagacccgg gaccagatag gacgcgccgg cggcggcgtc
     1441 ctccgtgctc tcggcggcgt cgttctgtcc gtcaagagcc gacgtttttt cggtggtggg
     1501 ttgtttgggc ataccgtctt actcggaatt
//
LOCUS       DATGBK010000828         2332 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_333988, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000828 DATGBK010000000
VERSION     DATGBK010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2332
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333988"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..707)
                     /locus_tag="VKJ77_11545"
     CDS             complement(<1..707)
                     /locus_tag="VKJ77_11545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007749307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45946.1"
                     /translation="MNQKQIEAFRLVMLRGSMTAAAEELGTSQPSVSRLIAELEASTG
                     LALFTRNGGRIQATDAGTAFYREVDRSFVGLEKLGHSAREIRQFGSGRLRLVAPPVLA
                     LSFVPLVIERFLAAYPRIAVSLEMRSEGTIQRWASSAYCDVGFATTTPDAFGVTSAEL
                     YRLAGVCALPAKHPLTARKRIHARDLRNQSLILPSYADDTRSSLDHALRQAGVNQVPV
                     IETPYGATICAMVARGLG"
     gene            847..2169
                     /locus_tag="VKJ77_11550"
     CDS             847..2169
                     /locus_tag="VKJ77_11550"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC45947.1"
                     /translation="MRADALLFHDEFRIAPYWWDAAPPETSRVALPPSVDLVIVGSGY
                     CGLSAAVEAARQGASVAVLDAAEIGAGGSTRSGGMVSSGQKLALTDAIRGVSAERLGR
                     LMAESAASFDYLKHLIASESLDADLQIGGRFFGAFTPGHFERLRHQGELLREKTGVTV
                     HVVTRAEQRAVVGSDYYYGGILVDEYGGLHTAKYHRALRELARRCGASLHSHAAVERI
                     ERTGARFAVHTARGKIDAKQVLVATNGYTGQLVPFFSRRVLPVASYQIATEPLPPGLM
                     DVLNPGRRMISDSKRNLFYTRPSPDGTRMLFGSRPSFREVGEREAARILHKKMVQLWP
                     ALRDVRITHAWKGYVAMTGDKLAHIGERDGVFYALGCNGNGVALMTYLGQRIARTLSA
                     LDAAPGAFGEGPFPLSPGGMARSLSVPIGTALYQLDDCWNGRVRGALS"
BASE COUNT          432 a          723 c          726 g          451 t
ORIGIN      
        1 cccaggccac gcgcgaccat cgcgcaaatg gtcgcgccgt aaggcgtctc gatcaccggc
       61 acctggttca cgccggcttg ccgcaacgcg tggtcgagcg acgagcgtgt gtcgtcggcg
      121 taggacggca ggatgaggct ctgattcctc aagtcacgcg catgaatccg cttgcgcgcg
      181 gtgagcggat gtttggcggg cagcgcgcag accccggcca gccgatacaa ctccgcgctg
      241 gtcacaccaa atgcatcggg cgtcgtggta gcaaaaccga catcgcaata ggctgacgat
      301 gcccagcgct ggatcgtacc ctcactgcgc atttccagcg acaccgcaat acgcggatac
      361 gccgcaagga aacgttcgat cacaaggggt acgaacgata acgcgagcac gggcggcgcc
      421 accaggcgca gccggccact gccgaactgg cggatctccc gcgctgaatg cccaagcttt
      481 tcgagtccca cgaagctgcg atcgacctcg cgatagaagg cggtgcccgc atcggtggcc
      541 tggatccggc cgccgttgcg tgtgaagagc gccagtcccg tcgaggcctc cagttccgcg
      601 atcaggcgac tgacgctggg ctgcgaggtg ccgagttctt cagccgctgc cgtcatcgat
      661 cccctcagca tcaccagcct gaacgcttcg atttgcttct ggttcatgtg tgcctctccc
      721 gcttgattga cttggtccac atgcaagctt gtcatatcaa aaatgaatag cagacgtttt
      781 tggccgtatt tgaccggatg acagaagcgc tcctagactg gtcgcaacta gtccccccag
      841 cgaaccatgc gagccgacgc actgcttttc cacgatgaat ttcgcatcgc accatattgg
      901 tgggatgcag cgccgccaga aacgtcgcgc gtcgcgttgc cgccgagcgt ggatctggtg
      961 atcgtgggga gcggctattg cggcttgtcg gcggcggtgg aagcggcgcg gcaaggcgct
     1021 tcagttgccg tgctggatgc cgccgagatc ggcgcgggcg gcagcacgcg cagcggcggc
     1081 atggtgtcga gcggacagaa actggcgctg accgacgcca ttcgcggagt atcggcggaa
     1141 cggctgggcc gcttgatggc ggaatccgcg gcgagtttcg actatctcaa gcacctgata
     1201 gccagcgaat cgctcgacgc cgatctgcag ataggcggcc gcttttttgg tgcgttcacc
     1261 cccgggcatt tcgagcggct gcgccatcaa ggcgagttgc tgcgcgagaa aaccggcgtg
     1321 accgtgcatg tggtgacgcg tgcggagcaa cgcgccgtgg tggggtcgga ctactactac
     1381 ggtggcattc tcgtcgatga atacggcggc ctgcatacgg cgaaatatca tcgcgccctg
     1441 cgcgaactcg cgcggcgctg cggcgcgagc ctgcattcac atgcggcagt ggagcgcatt
     1501 gaacggaccg gcgcacgctt cgctgtccat acagcgcgcg gcaagattga tgcaaaacaa
     1561 gtgctggtcg cgaccaacgg ttataccggc cagctagtac cctttttctc acgtcgcgtg
     1621 ctgccggtgg cgagttacca gatcgccaca gaaccactgc cgccaggact catggatgtc
     1681 ctgaatccag gccgccgcat gatcagcgac tccaaacgca acctgtttta tacccgtcct
     1741 tctcccgacg gaacgcgcat gttgttcggc tcacggccat cgtttcgtga agtcggcgaa
     1801 cgcgaggcgg cgcgaatcct gcacaagaaa atggtgcagc tctggcccgc tttgcgcgac
     1861 gtgcgtatta cgcatgcatg gaagggatac gtcgcgatga ccggcgacaa gctcgcgcat
     1921 attggcgaac gcgacggcgt gttttacgcg ctcggctgca acggtaacgg cgtcgcgttg
     1981 atgacttacc tcgggcaacg cattgcaaga acactatcag ccctcgatgc cgcgcccggc
     2041 gcattcggcg aaggtccgtt cccgctgagt cccggcggca tggcacgcag cctgagcgtg
     2101 ccgataggca ccgcgctgta tcagctggac gattgctgga acggacgcgt gcgcggcgcg
     2161 ttgtcctgac gcttggtact cgtggtagtg actctgcatt gactggtcgt attttcaatt
     2221 catcgctggt ttcccctgga gcaacatcat gcggtttcga caacttctca gcctggtttc
     2281 tctcgtcgct tccttctcgt tgatggccgc taccagcgcc catgccgacg ac
//
LOCUS       DATGBK010000829         1634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_33789, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000829 DATGBK010000000
VERSION     DATGBK010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33789"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..413)
                     /locus_tag="VKJ77_11555"
                     /pseudo
     CDS             complement(27..413)
                     /locus_tag="VKJ77_11555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015603844.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            826..>1634
                     /locus_tag="VKJ77_11560"
     CDS             826..>1634
                     /locus_tag="VKJ77_11560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC45948.1"
                     /translation="MSRALNVTLRQLRVFIEVAKLQSFSRAGDEIGLTQSAVSRCVRE
                     LEGEIGLKLVDRTTREVQLTDVGANLVGSVSRLLSDLDEALREIRDLGQQRRGRVIVA
                     ASPTVACRLMPLVISACVREFPLISLGLRDDLQSDVIRKVKSGEVDFGVAIGPYANDD
                     LYGEVVMTDSFCAVARRDHPLAAAQEVPWAALSGERLVMLDHASGSRPIIDAVLREHH
                     VIADVVQELGHSATVFGLVEAGVGISVLPWLALPLPANSSLVALPLVPRVER"
BASE COUNT          301 a          476 c          526 g          331 t
ORIGIN      
        1 gtcgtgccag gctgtcaggc cagcttgacc ggcgcgcgcc acgattccgg atttgtccag
       61 aatgcgccgc gcagacggtc gcggctcagc ggtgcgggcg gtttcgcagc ggtggaaccg
      121 atccggcctc gcaacgacac ctcacgaccg ttgttgccca gccgtttcac gatttcggcg
      181 agcgtaccat ccgcttgcca ttcgtcgaac cgtctacggc aagtcggcgg cgacgggtag
      241 cggcccggca acttcgacca gccttcgccc gtggacagga cccacaaaac ggcattgacg
      301 acagcgcgtg cttccacgcg cggacggccg cgccgttcac tacgtgccgg ttctgcgcaa
      361 aacaaggcct ctaccagcgc ccactcgtta tctcttaaat cgtcgaacat catgtttcac
      421 ctcagcgaag ctaaccccgg tgcgctgccc cgcgccgcgc actctggtcg gaattcgaag
      481 atcgaaccca ggtaaggtcg gagcagacat tgcgacggac gatttgcgtt taaaactgca
      541 atggctccga cctctgcgca agttaatgcg agaaccgtgc catgcgtgta tcgatcggac
      601 ggaaagcctc gcggcagtag gctggcgcgg tgccagcatg gcccgtatga gacgctataa
      661 gtgcagttaa tgaaatcggg acaatcacca atcaagtgca ataagcccat ccggcgtgcg
      721 cgaatgcatt tctgctgcac tgcagcgcag gccaatgaaa ccgttttctg agccagtctt
      781 tgatctacaa tttgcatcta tgagatagat tgatgaggga agggtatgag tcgagcgctc
      841 aatgtgacgt tgcgtcagtt acgggtgttt attgaagtcg ccaagttgca aagcttcagc
      901 cgggccggcg atgaaatcgg cctgacgcaa tccgcggtga gccggtgcgt acgtgagctc
      961 gagggggaaa tcgggctgaa gctggtcgac cggaccaccc gcgaggtgca actcaccgac
     1021 gtcggcgcga atctcgtggg cagcgtgtca cggctgttgt cggaccttga tgaagcgctc
     1081 cgcgaaatcc gggatctcgg ccagcaacgg cgcggacggg taatcgtcgc ggccagtccg
     1141 acggtagcgt gccgtctgat gccgctcgtc atttcggcct gtgtccggga atttccgttg
     1201 atttcactgg gtttgcgtga cgacctccag agtgacgtga tccgcaaggt caagtccggc
     1261 gaagtcgatt tcggtgtggc gatcggtccg tacgccaacg acgacctgta tggggaagtc
     1321 gtgatgaccg actcgttttg cgcggtcgcg aggcgggatc atccccttgc ggcggcgcag
     1381 gaggtaccgt gggccgcatt gtccggcgaa cgtctggtca tgctggacca cgcttccgga
     1441 agccgtccga ttatcgatgc cgtgctgcgt gaacatcacg ttatcgccga cgtggtgcag
     1501 gagctgggtc attccgctac cgtgttcggg ctggtggagg cgggcgtcgg cattagcgtg
     1561 ctgccgtggc tggccctgcc gttgccggcg aattcgtcgc tggtggcgtt gccgctggtg
     1621 ccgcgggtcg agcg
//
LOCUS       DATGBK010000830         1711 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_241526, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000830 DATGBK010000000
VERSION     DATGBK010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241526"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            361..>1711
                     /locus_tag="VKJ77_11565"
     CDS             361..>1711
                     /locus_tag="VKJ77_11565"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006398785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HMC45949.1"
                     /translation="MADKLIIFDTTLRDGEQSPGASMTKEEKIRIAKALERMKVDVIE
                     AGFAASSNGDFDAIHTIAGLIKDSTICSLARANDKDIQRAADALKPADHFRIHTFIAT
                     SALHMEKKLRMSADQVYEQARLATRFARKFTDDVEFSPEDGSRSDLDFLCRVLEAVID
                     EGATIINIPDTVGYAVPEGYGNLIKTIRERVPNSDKAVWSVHCHDDLGMAVANSLAGV
                     HIGGARQIECTINGLGERAGNTALEEVVMAMKTRKDYYGLELGIDTTHIVPTSKLVSQ
                     ITGFVVQPNKAVVGANAFAHASGIHQDGVLKARDTYEIMRAEDVGWSTNKIVLGKLSG
                     RNAFKQRLEDLGVTLESETDVNAAFVRFKELADRKSEIFDEDIMAIVSEESAEMQAKE
                     TFRFVSLAQHSETGEQPHARVVFAVDGIEVQGESRGNGPVDATLHAIESKVTSGAELV
                     "
BASE COUNT          361 a          498 c          502 g          350 t
ORIGIN      
        1 gcgcattgag ggtatagcgc gcatcggtct gacgccggtg cgcgcttttt gcttttgggc
       61 gcctctttgt ccaaagcctt gcgggtcacg tcaatcggtg cgatcggaaa gcccaattgc
      121 acgctctcaa aaatctcgct atagtctgca aatgattttt ttcgcccatc ccctctcgtc
      181 ttttctagct ggtgcgccgc tacgcgcgct accgctacta gcgcgcctac cgcgctaagc
      241 ttcccgcctc ccgtctgctc gttcgtggtt ttcgacgcca gcggtggcgc gaacacccgg
      301 attccgtatt gtttttcccc accgttttca aaactctaaa actccccact ggagcccgac
      361 atggcagaca aactgatcat tttcgacacg accttgcgcg atggcgagca atcccctggc
      421 gcatcgatga caaaggaaga aaagatccgg atcgcgaagg cgctcgaacg gatgaaggtc
      481 gatgtgatcg aagcaggctt cgctgcgagc tctaacggcg atttcgatgc gatccacacc
      541 attgccggct tgatcaagga cagcacgatc tgttcgcttg cccgcgccaa cgataaagac
      601 atccagcgcg ccgccgacgc cctgaagcct gccgatcact tccgcatcca tacgttcatt
      661 gccacgtcgg ctttgcatat ggaaaagaag ctgcgcatga gcgcggacca ggtctacgaa
      721 caggcgcgtc ttgccacgcg tttcgcgcgc aagttcaccg atgacgtcga attctcgccg
      781 gaagacggca gtcgctcgga tctcgacttc ctgtgccgtg tgctggaagc ggtgatcgat
      841 gaaggcgcca ccatcatcaa tatccctgat accgtcggct acgccgtgcc ggaaggctac
      901 ggcaacctga tcaagacgat ccgcgaacgc gtgccgaatt cggacaaggc ggtttggtcc
      961 gtgcattgcc acgatgacct cggcatggcg gttgcgaatt cgctggccgg cgtgcacatc
     1021 ggaggcgcgc gtcagatcga gtgcacgatc aacggtctgg gcgagcgcgc gggtaacacg
     1081 gcgctggaag aagtcgtgat ggccatgaaa acgcgcaagg attactacgg gctggaactc
     1141 ggtatcgata caacgcatat cgtgccgacc tcgaaactcg tctcgcagat caccggtttt
     1201 gtcgtgcagc cgaacaaggc tgtggtcggc gcgaatgcat ttgcgcatgc ttccgggatt
     1261 caccaggatg gcgtactcaa agcgcgcgac acctacgaaa tcatgcgtgc cgaagacgtg
     1321 ggctggtcga ccaacaagat cgtgctcggc aagttgtcgg gtcgtaacgc attcaagcag
     1381 cgcctggaag atctcggcgt gacgctggaa tcggaaacgg atgtgaacgc cgcgttcgtg
     1441 cgcttcaagg agctcgctga tcgtaagtcc gagatcttcg atgaagacat catggcgatc
     1501 gtctccgaag aatcagcgga aatgcaggcg aaggaaacgt tccgcttcgt gtccctggcg
     1561 cagcactcgg aaacgggcga gcagccgcat gcacgcgtgg tgttcgccgt cgatggtatt
     1621 gaagtgcagg gtgaatcgcg tggaaacggc ccggtcgatg ccacgctcca cgcgatcgaa
     1681 tcgaaggtga cgagtggcgc tgaactcgtg t
//
LOCUS       DATGBK010000831         3527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_195632, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000831 DATGBK010000000
VERSION     DATGBK010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3527
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195632"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..769)
                     /locus_tag="VKJ77_11570"
     CDS             complement(59..769)
                     /locus_tag="VKJ77_11570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HMC45950.1"
                     /translation="MLEFFATLHWGAVLQIIVIDILLGGDNAVVIALACRNLPPQQRT
                     RGVLLGTLGAIVLRVALISFAVLLLDVPFLKFAGGLMLLWIGVKLMMPDHSDPNIKPT
                     DQLWAAIKTIIVADAVMSLDNVIAVAGAAESADPQHRLALVIFGLLVSIPLIVWGSTL
                     VLKLLDKFPIVIALGAGLLGWIAGGLMIDDPFFDRWPALNVLGAEYTAHVAGAVLVLA
                     FGWYFRRRVLAAESNAAH"
     gene            complement(927..1808)
                     /gene="sucD"
                     /locus_tag="VKJ77_11575"
     CDS             complement(927..1808)
                     /gene="sucD"
                     /locus_tag="VKJ77_11575"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HMC45951.1"
                     /translation="MSILINKDTKVITQGITGKTGQFHTRACREYANGREAYVAGVNP
                     KRAGEDFEGIPIYASVAEAKAETGATVSVIYVPPAGAAAAIWEAVEADLDLAICITEG
                     IPVRDMLELRDRMRRENRKTLLLGPNCPGTITPDELKIGIMPGHIHRKGRIGVVSRSG
                     TLTYEAVGQLTAIGLGQSSAVGIGGDPINGLKHIDVMKMFNDDPDTDAVIMIGEIGGP
                     DEANAAYWIKDNMKKPVVGFIAGVTAPAGKRMGHAGALISGGADTADAKLEIMEACGI
                     TVTKNPSEMARLLKAML"
     gene            complement(1941..3122)
                     /gene="sucC"
                     /locus_tag="VKJ77_11580"
     CDS             complement(1941..3122)
                     /gene="sucC"
                     /locus_tag="VKJ77_11580"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006486694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HMC45952.1"
                     /translation="MKESRMKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEELG
                     GPVWVVKAQIHAGGRGKGGGVKVAKTLEQVREYSNQILGMQLVTHQTGPEGQKVNRLL
                     IEEGADIKKELYIGLVLDRITQKVVVMASSEGGMDIEEVAEKTPELLHKFAVEPSTGL
                     LDKDADDLSRKIGIPEGSIPQARAILQGLYKAFWETDASLAEINPLIVTGDGKVIALD
                     AKFNFDANALFRHPDIVAYRDIDEEDPAEVEASKFDLAYISLDGNIGCLVNGAGLAMA
                     TMDTIKLFGGEPANFLDVGGGATTEKVTEAFKIMLKNPGLKAILVNIFGGIMRCDVIA
                     EGVIEASKAVSLKVPLVVRMKGTNEDLGKKMLADSGLPIIAADSMEEAAQKVVAAAEG
                     K"
     gene            complement(3306..>3527)
                     /locus_tag="VKJ77_11585"
     CDS             complement(3306..>3527)
                     /locus_tag="VKJ77_11585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45953.1"
                     /translation="KPSDSSAGTAAGAESDKPPFQLGRCNALRFDGEAVRQYYPRWFG
                     HAPRGATERIADQDNSRKAGSEVEPAQRN"
BASE COUNT          674 a         1109 c          982 g          762 t
ORIGIN      
        1 cttattgagc gctcaccggt ctcgacagtc agccagatgg ccaacggtcg aaccaaaatc
       61 agtgtgcggc attcgattcc gccgccagca cgcgccggcg aaagtaccag ccgaaggcca
      121 gcaccagcac cgcacccgcc acgtgcgccg tgtactcggc gcccagcacg ttcaacgcgg
      181 gccagcggtc gaagaacgga tcgtcgatca tcaatccgcc cgcgatccag ccgagcaaac
      241 ccgcaccgag cgcaatcacg atcgggaatt tatcgagcag cttaagcacc agcgtactgc
      301 cccacacgat caacggaatg cttaccaaca agccgaagat aaccagcgcc agccgatgct
      361 gcggatcggc ggattcggct gcgcccgcca ctgcgatcac gttatcgagg ctcatcacgg
      421 catcggccac gatgattgtc ttgatcgcgg cccaaagctg gtcggtcggc ttgatattcg
      481 ggtcgctgtg atccggcatc atcagcttca cgccaatcca cagcaacatc aggccgccgg
      541 cgaacttgag gaaggggaca tcgagcaaca acacggcgaa cgagatcaac gcgacccgca
      601 gcacgatcgc cccaagcgta ccgagcagca cgccgcgcgt gcgttgctgg ggcggcaaat
      661 tcctgcaggc gagcgcgatg acgacggcgt tatcgccgcc aaggagaata tcgataacga
      721 taatctgtag aacagcgccc caatggagcg tggcgaaaaa ttcgagcatg gcgaaaccga
      781 tgaacgacag cgacagaaaa atgcgagcaa taaaaaagcg gggaagcccg tagctccccc
      841 gctcttagaa ccgacgtttt acgaaaggct tacgtaagca taccgcagcc ctgcgttttc
      901 tgtcgatcgg ccgttcctta aaccctttaa agcatcgcct tcaacagacg cgccatttcc
      961 gacgggttct tcgtaacggt gataccgcat gcttccatga tttccagctt ggcatcggca
     1021 gtatccgcac cgcccgaaat cagcgcgcct gcgtgaccca tgcgcttgcc ggccggagcc
     1081 gtgacgcccg cgatgaagcc aaccactggc ttcttcatgt tgtccttgat ccagtaagcc
     1141 gcgttcgctt cgtccgggcc accgatctcg ccgatcatga tcacggcgtc cgtgtcggga
     1201 tcgtcgttga acatcttcat gacgtcgatg tgcttcagac cgttgatcgg atcgccgcca
     1261 ataccgactg ccgacgactg gccaaggcca atagccgtca actggccaac cgcttcgtac
     1321 gtgagcgtgc ccgaacgcga caccacgccg atacggccct tacggtggat atgacccggc
     1381 atgatgccga tcttcagttc gtccggcgtg atcgtgcccg ggcaattcgg tccgagcaac
     1441 agcgtcttgc gattttcgcg acgcatacgg tcccggagct cgagcatgtc acgcacggga
     1501 atgccttccg tgatgcagat cgcgagatcc aggtcggctt cgaccgcttc ccagattgcg
     1561 gcagcggcgc cagccggcgg cacgtagatc accgaaacgg ttgcacccgt ttcagccttc
     1621 gcttccgcga cgcttgcgta gatggggatg ccttcgaaat cttcgccggc gcgcttcggg
     1681 ttcacgcccg ccacgtacgc ttcacgtccg ttcgcatact cgcggcaagc gcgggtgtgg
     1741 aactgaccgg tcttgccggt aataccctgg gtgatgacct tggtgtcttt gttgatcaga
     1801 atcgacatag tgtgacctct gttcgtcgac gtcgcttcta gccgtcgtgc cttgtttcaa
     1861 agcacgcagc taaaagcgca gcctttcgta tctggtggaa cgctcgtaat ccggtgtggt
     1921 gtttaactaa acaacgcgga ttacttgccc tcggctgctg caacaacctt ctgcgcagct
     1981 tcttccatgc tgtcggccgc gatgatcggc aagcctgaat ccgccagcat cttcttgccg
     2041 agatcttcgt tcgtgccctt catgcgcacg accagaggca ccttcagcga cacggccttc
     2101 gacgcttcga tcacgccttc cgcgatcaca tcgcagcgca tgatgccgcc gaagatgttc
     2161 acgaggattg ccttgaggcc cgggttcttc aacatgatct tgaaggcttc cgtgaccttc
     2221 tcggtcgtag caccgccgcc tacgtcgagg aagttggccg gctcgccgcc gaacagcttg
     2281 atcgtgtcca tggtggccat tgccagaccc gcgccgttca ccaggcagcc gatgttgcca
     2341 tcgagcgaga tgtaggccag atcgaacttc gacgcttcca cttcagccgg atcttcttcg
     2401 tcgatgtcgc gatacgcgac gatgtccggg tgacggaaca gcgcgttggc gtcgaagttg
     2461 aacttggcgt ccagtgcgat caccttgccg tcgccggtga cgatcagcgg gttgatttcc
     2521 gccagcgatg cgtccgtttc ccagaatgcc ttgtacaggc cttgcaggat cgcgcgcgct
     2581 tgcgggatcg agccttcggg gatgccgatc ttgcgcgaga ggtcgtcggc gtctttgtcc
     2641 agcagacccg tcgacggctc gacggcgaac ttgtgcagca gttccggcgt cttttccgcg
     2701 acttcttcga tgtccatacc accttcgctc gatgccatca ccacgacttt ttgcgtgatg
     2761 cggtcgagca cgaggccgat gtacagttcc ttcttgatgt ccgcgccttc ttcgatcagc
     2821 aggcggttca ccttttggcc ttcagggccg gtctggtgcg tgacgagttg catgccgagg
     2881 atctggttcg agtattcgcg aacctgttcc agcgtctttg caaccttcac gccgccgccc
     2941 ttaccgcgac cgccagcgtg aatctgagcc ttgacgaccc ataccgggcc gcccagctct
     3001 tcagcggcct tgaccgcatc gtccaccgag aacacgggct tgccgcgcgg gaccgcgacg
     3061 ccgaacttcc gcaggatttc ctttccctgg tactcgtgaa tcttcatgcg tgattccttc
     3121 agtctgagag ttggattgaa cttcgattac gtggattaaa ggattgctag ggttacgttc
     3181 agcgttgctt ccggcgccaa aagtacgcgt ccggcgtcat gctgatgttt cctggtcggc
     3241 cagttctggg aacctgctct tgctaatttc gcttagggtc tgctactaag tccgctagct
     3301 ttcgcttaat ttcgctgagc cggctccact tcgcttccgg cctttctgga gttgtcctga
     3361 tctgctatcc gctctgtcgc gccacggggc gcatggccga accagcgcgg ataatattgc
     3421 cgaacggctt caccgtcgaa acgcaatgcg ttgcaacggc caagctgaaa tgggggtttg
     3481 tcgctttctg ctccggctgc tgtgcctgct gaactatccg atggttt
//
LOCUS       DATGBK010000832         2698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_287912, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000832 DATGBK010000000
VERSION     DATGBK010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287912"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..726)
                     /locus_tag="VKJ77_11590"
     CDS             complement(<1..726)
                     /locus_tag="VKJ77_11590"
                     /inference="COORDINATES: protein motif:HMM:NF015226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015204 - urea transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071918 - urea transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HMC45954.1"
                     /translation="MTIAIRVDTEATIQIRSFARSMGQIVLQRNAATGGILVLALLCF
                     SPRLACALLIGTLTGNVLAHIFDDHGSPTTLNDLHGFNGGLAALAAFTFIHDDSRASA
                     VAILAAVLATGLSNRLTRALSRWNLPAYSSPAVIVTWAWLPLFADPSVPNATARVVAA
                     ASADSLASVLFSVAPAFLRPCLQGIVAGLAPITFAAGPAAGALILVGLLVARPSRAAW
                     ALGGSALGLALYTFVGTSAGMLQS"
     gene            1128..2036
                     /locus_tag="VKJ77_11595"
     CDS             1128..2036
                     /locus_tag="VKJ77_11595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45955.1"
                     /translation="MTFSLQQLHAFTTIVESSSLGRAAEVLHVTQPALSRTIKRLEEE
                     LGAPLFERHSKGMQLTAIGEALLPHATLLLHEADNAREEIDAIRGLAKGTIRVGAVAS
                     IATLVLPLAVSGVLARWPNLRVQIIEGVWDRLADSLLKQEIDLALSMAVPDTEEITAI
                     SDCCWEDTSYVVAALDHPLRAKTELCLADTLDQQWCVPPRGTGPFEHMQRVFAEHGLP
                     MPEIAVETRSITVLKSLVTRAGFLSWMAAPMYDTESAAGVFDTLPIPGLVARRTLTAF
                     RRRQGILPRPAVMLLEQLRQLTATVA"
     gene            complement(2153..>2698)
                     /locus_tag="VKJ77_11600"
     CDS             complement(2153..>2698)
                     /locus_tag="VKJ77_11600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4410 domain-containing protein"
                     /protein_id="HMC45956.1"
                     /translation="KTQFDGASAMKKQADDALEVREQVADEIVKQLQSMGLRAVRANS
                     PAPTDRNILIVQGSFETIDAGNRRRRMLVGLGAGKSQVGTSVQLVYQPAGETPRLVQS
                     FEANADSGKAPGVVETAGIGAAAGHVATSAAAGVGLHAVSETKHAGVSEDAKRLADSV
                     AKQVAQVGVSEGWMTSDRIKG"
BASE COUNT          522 a          846 c          790 g          540 t
ORIGIN      
        1 gctctgcagc atgcccgcgg atgtgccgac aaacgtatat agcgcaagtc cgagcgcgct
       61 accaccgagc gcccatgcgg cgcgtgacgg cctcgccacc aggaggccga cgagaatcaa
      121 agcccccgcg gcaggccccg cggcaaaagt gatcggcgcc aggcccgcga caataccttg
      181 gaggcagggc cgaaggaatg caggggcgac gctaaaaagt acactggcaa ggctgtccgc
      241 gctcgccgcg gcaaccactc gcgctgtcgc atttgggacg gatgggtccg cgaataaagg
      301 tagccaagcc catgtcacaa tcactgcggg actcgaatag gccggcaaat tccaacggct
      361 gagcgcccgc gtgagcctgt tcgacaaacc ggtggctaac acggccgcga ggattgcgac
      421 ggcactcgcg cgcgaatcgt catggatgaa cgtaaacgcg gcaagtgccg cgagccctcc
      481 attgaagcca tgcaagtcgt tgagcgttgt cggcgaacca tggtcatcga agatatgcgc
      541 gagcacattg cccgtcagcg tgccgattaa caatgcgcat gcaaggcggg ggctgaagca
      601 caataaagcg aggacaagga tcccgcctgt cgcggcgttt ctctgtagca cgatttggcc
      661 catgctccgc gcgaagctgc ggatctggat ggtagcttcg gtatcgactc tgattgcaat
      721 tgtcattttg agcgcggaca gcttgacacg cgtggcgctc gtgagcgcaa cgcagatgaa
      781 ccgaccggca atcaatcgcc gctctagttc atgcgttttg tcttcgacac gatcctgtcg
      841 aagctagcga aacttatcac cggcaacagt ttcaacccat agcgaggaag ctatgcacga
      901 tatattgttg cggcgatagg tcatgcctcg gcagcgtcga aatccaatct tcgagcaccg
      961 gaacacgccc gttacgttga cgtctatgcc gcgttacatc cagcttgcag aaagtggcct
     1021 tcacctgcaa agcccactct ccggcacacg ttttcgtttt aacctttatt gttaagcgaa
     1081 aattgcgttg atctgctctc cttttagcct ttcgctccca agcaatcatg acctttagtc
     1141 ttcagcagct tcatgcgttc acgacaattg tcgaaagcag cagcctcggt cgcgcggcgg
     1201 aggttctcca tgtgacgcag ccggctttga gccggacgat caagcggctg gaggaagagc
     1261 tcggcgcccc tctgttcgaa cgtcattcga aaggcatgca gctgacagcg attggcgagg
     1321 ccctgctccc gcacgccacc ctgctgctgc atgaagccga caatgcgcgc gaagagatcg
     1381 acgcgatccg cggtcttgcc aagggcacga tccgggtagg cgccgtggcg agcattgcaa
     1441 ccctcgtgct gcccttggcg gtcagcggcg tgcttgctcg ttggccgaac ttgcgcgtgc
     1501 agatcattga aggcgtgtgg gaccggctcg ccgacagcct gcttaagcag gagatcgacc
     1561 ttgcgctcag catggcagtg cccgatacgg aggagattac ggccatatcc gattgttgct
     1621 gggaggacac gagctacgtg gttgctgcgc tcgatcatcc gctgcgtgcg aaaacggagc
     1681 tatgcctggc ggataccctc gatcagcagt ggtgcgtccc gcctcggggc actggcccat
     1741 tcgagcacat gcagcgtgta tttgccgagc atgggctgcc catgccggag atcgcggtcg
     1801 agacgcggtc cattactgtc cttaagagtc ttgtcacgcg cgcggggttt ttaagctgga
     1861 tggccgcgcc catgtacgac accgaaagcg cggccggcgt gttcgatacc ctgcccattc
     1921 cagggcttgt cgcgcgtcgc acgctaacgg ccttccgacg tcgccagggc atcctgccgc
     1981 gccccgccgt catgctgctg gagcagctaa ggcagttgac cgcgaccgtt gcataagcac
     2041 tgcaatcaag ctggatgccc ccggtttgtc catattcccc ggtgcccggc agcttgataa
     2101 aattcctata ctgtttcgcc gagtttgatc ctgggccggg cggcccggat cattagccct
     2161 tgatccggtc agacgtcatc cagccctcac tcacgccgac ctgcgcaacc tgcttcgcga
     2221 cggaatcggc caggcgcttc gcatcttccg acactccggc gtgtttggtc tcggacacag
     2281 catgcagacc cacccctgcc gctgccgatg tcgcaacgtg tccggcagcg gcaccaatac
     2341 ccgctgtttc caccacgccg ggcgccttgc cgctgtccgc attggcttcg aaactctgta
     2401 ccagcctcgg cgtttcgccc gccggttgat acacgagttg cacagacgtg ccgacctggc
     2461 tttttcccgc gcccagacca accagcatcc ggcggcggcg attcccggca tcgatagtct
     2521 cgaagctgcc ttgcacgatc aggatgttcc ggtcggtagg cgcgggggaa ttcgcacgta
     2581 ctgcgcgcag gcccattgac tggagttgct tgacgatttc atcggccacc tgctcgcgca
     2641 cttcgagcgc atcgtcggct tgcttcttca ttgccgacgc accgtcgaat tgcgtctt
//
LOCUS       DATGBK010000833         3739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_310982, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000833 DATGBK010000000
VERSION     DATGBK010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3739
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310982"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /gene="flgC"
                     /locus_tag="VKJ77_11605"
     CDS             complement(<1..339)
                     /gene="flgC"
                     /locus_tag="VKJ77_11605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006402757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HMC45957.1"
                     /translation="MPSLMNIFNVAGSAMSAQAQRLNVTASNLANADSTTGPDGQPYK
                     AKQVVFGVDPLGGARTASGQQVGGVQVTGVIDDPTPMKTTYDPTNPAANTDGYVTLPN
                     VDPVQEMVNMI"
     gene            complement(361..852)
                     /gene="flgB"
                     /locus_tag="VKJ77_11610"
     CDS             complement(361..852)
                     /gene="flgB"
                     /locus_tag="VKJ77_11610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010112961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009429 - bacterial-type flagellum basal
                     body, proximal rod [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HMC45958.1"
                     /translation="MLDKLDKEFAFGREALDVRAYRQELLSSNIANADTPGYKARDVD
                     FSSALAGALKKTGAAADTTASGTAPLQMAQPVSVSTGASLATTSAGHMAGTTTLTASG
                     GSTDDYGRLAYRIPSQPALDGNTVDMDSERVQFADNALHFEAGMTVVSSQIKTMLSAI
                     TSN"
     gene            1176..2717
                     /gene="flgA"
                     /locus_tag="VKJ77_11615"
     CDS             1176..2717
                     /gene="flgA"
                     /locus_tag="VKJ77_11615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HMC45959.1"
                     /translation="MHSFTAPARKPAVHRPAANGLVKGRAHRARRFAPSGPAALCVLA
                     LALLTAGVTTARAQETGGSGGSGTIMIAGPAETNPAAVVTMAKDAGMTVDAGATQSAS
                     PAQPVRTSHPAGYAAAAHAADAAMRAAAQALDAHADAADASSSSVDTSGLIVIPGPGE
                     AKAAKPMAPAPRVAMAMTPSRTAAASNDAPDAGGMIEIPGNGEPKAPTSISNVGSNAG
                     SNARVPAADTLPRVTTSSRDVMPVVVATDGSASVQGTPRIASRGFQARPIAAAPATPV
                     AGMMSVSMRTPAPIRAPLQPAPAMAGAPNQLTQDGDSVRAAALVFLTQQAAGLPGKAD
                     ITVTPVFPRGLAACSTLEPFLPAGSRLWGRTTVGVRCSGERPWTLYLQARVSVMATYF
                     VAARAVAPGEVLTAADLIPRDGDLTAMPLAIVTDPSQAVGAVTLSRLAAGLPLRTDML
                     RGAGAVVIGQSVHVVTSGAGFSISAEGSAMNNAAPGQQVRVKTAGGQIISGIVKDGST
                     VEIQL"
     gene            2908..3246
                     /gene="flgM"
                     /locus_tag="VKJ77_11620"
     CDS             2908..3246
                     /gene="flgM"
                     /locus_tag="VKJ77_11620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HMC45960.1"
                     /translation="MKIDSSNTSQIAALQEAAQQRAAQADAQATSTTGGTTSSTGATG
                     SSNSTVSLSALSTDLRTSGSSDIDTAKVASIKAALNDGSYKVDSGKIADGMLSSAREL
                     MQTNTPPAGG"
     gene            3407..>3739
                     /locus_tag="VKJ77_11625"
     CDS             3407..>3739
                     /locus_tag="VKJ77_11625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HMC45961.1"
                     /translation="MKDALLATVIDETAAVQAFESLLVHEEKALIAASPLDTLPSIIE
                     QKTALTEQLAALERQRDEQLDALGLPKGFVGMEQAVTGDEALASHWQKLLAAAGRARR
                     GNNSIGVLI"
BASE COUNT          664 a         1201 c         1182 g          692 t
ORIGIN      
        1 aatcatgttg accatttcct gcaccggatc gacgttcggc aaggtcacgt agccgtccgt
       61 gttggctgcg ggattggtcg ggtcgtaggt agtcttcatc ggcgtcgggt cgtcaatcac
      121 gcccgtcacc tgcacgccgc ccacctgctg gccggacgcc gtgcgcgcgc cgccgagcgg
      181 atcgacgccg aacaccacct gcttcgcctt gtacggctgg ccgtccgggc ccgtcgtgct
      241 gtccgcgttc gccaggttcg aggcagtcac gttcaggcgc tgcgcctgcg cggacatcgc
      301 cgagccggca acgttgaaga tgttcatcaa agagggcatt gcttctcctc gttatccagt
      361 tcagttcgac gtgatcgccg agagcatcgt cttgatctgc gacgacacca ccgtcatgcc
      421 ggcttcgaaa tgcagtgcgt tgtccgcgaa ctggacgcgc tccgaatcca tgtcgacggt
      481 gttgccgtca agcgccggct ggctcgggat ccggtacgcg agacggccgt agtcgtcggt
      541 gctgccaccg ctggcggtaa gcgtcgtcgt gccagccata tgtcccgccg atgtcgtcgc
      601 gagcgacgcg ccggtcgaca cgctcaccgg ctgtgccatc tgcaacggcg cagtgcccga
      661 agccgtggtg tccgccgccg cgcccgtctt cttcagtgcg cctgcgaggg cgctggagaa
      721 atcgacgtcg cgcgccttgt agcccggggt atcggcgttc gcaatattcg acgacaacag
      781 ttcctgccgg tatgcgcgca catccagcgc ttcacggcca aaggcaaatt ccttatcgag
      841 cttgtccagc atggcggtcc tcttcagctt cggatcttgt ctgcggtgtt tcgcgtgtct
      901 tgcgatcgat gacgccgggc aatcagccaa gcgcccggtt gaaatcgacc attggctatc
      961 gaagactttt gcatgagacg aatcttagga gcgagacgca agatgcaatc agacgaataa
     1021 cagggaaagc cggcctctat tcgacgcttg cctttagccg ccgaaatcta gaattcgtct
     1081 cgtgggttga tcttttaagg aattcaccga ctttggatga ggggtttttc gttgttggtt
     1141 tgccggattc actggatttg tttgggagaa acacaatgca cagcttcact gcgcctgctc
     1201 gcaagccggc ggttcaccgc ccggccgcga acggcctggt gaaaggccgt gctcatcggg
     1261 ctcgccgttt cgcgccgagc ggtccggcgg cgctctgcgt gcttgcgttg gctctcttga
     1321 ctgccggcgt gacgacagcg cgcgcgcagg aaacaggagg aagcggggga agcggcacga
     1381 tcatgattgc cggtcccgcc gaaaccaatc cggcggccgt cgtgacgatg gcgaaagacg
     1441 cgggcatgac ggtggacgca ggcgcgaccc aatcggcgag ccccgctcag cctgtgcgca
     1501 cctcgcaccc cgcgggttac gctgcggcgg cccatgcagc cgatgccgcc atgcgcgccg
     1561 ccgcgcaggc actcgatgcc catgccgacg cggccgatgc atcctcttct tccgtcgata
     1621 ccagcggttt gatcgtgatt ccgggaccgg gcgaagcgaa agcggcgaag cccatggctc
     1681 ccgcgccgag ggtggcgatg gcgatgacgc cgagccgcac ggctgctgca tcgaacgatg
     1741 cccccgatgc cggcggaatg attgaaatcc ccggtaatgg cgagccgaaa gcacctacta
     1801 gtattagtaa cgttggaagt aacgctggaa gtaacgcccg cgtccctgcc gccgataccc
     1861 ttccccgcgt caccacatca tcacgcgacg tgatgcccgt ggtcgtcgcg acggacggca
     1921 gcgcttcagt ccagggcacc ccgcgcattg cctcgcgagg cttccaggcg aggccgatcg
     1981 cggctgcgcc cgccacgccg gtcgccggca tgatgtccgt ttcgatgcgc accccggcgc
     2041 ccatccgcgc cccgctccag cccgcgcccg ccatggccgg cgcgcccaac cagctcacgc
     2101 aggacggcga ctcggtgcgc gccgctgcgc tcgtcttcct gacgcagcag gcggcgggtt
     2161 tgcccggcaa ggccgacatc accgttacgc ccgtctttcc ccgcggcctc gcggcctgtt
     2221 cgacgctcga gccgttcctg cccgcgggct cgcgtctctg gggtcgcacc acggtcggcg
     2281 tgcgttgctc cggcgagcgg ccgtggacgc tctatctgca agcacgcgtc tcggtgatgg
     2341 ccacgtattt cgttgccgcc cgcgcggtcg cacccggcga agtactcacc gccgccgacc
     2401 tgattccccg cgacggcgat ctcaccgcca tgccgctagc tatcgtcacg gatccgtcac
     2461 aagccgtggg agcggtgacg ttgtcgcggc tcgcggcagg cctgccgctg cgcaccgata
     2521 tgctgcgcgg cgccggcgct gtcgtgatcg gccagagcgt gcacgtggtg accagcggtg
     2581 cgggtttttc gatatcggcg gaaggcagcg ccatgaataa cgctgcgccc ggtcagcaag
     2641 ttcgcgtcaa aacggccggg ggacagatca tttccggcat cgtgaaggac ggctcgacgg
     2701 tggaaatcca gctttgaaaa atggtccgga gatgccctat gtgggttatc cctcacttgt
     2761 ttcaatttgt tgcaattcct tatcgggctt atccggcaag gctgaacggg agaaagggct
     2821 gactggcgcg tggtccgggt ggtgggaagg ttaaagtttc tacatgcatc cgccgataaa
     2881 ggaatcacat cgtcagggaa gaccatcgtg aaaatcgatt ccagcaacac cagccagatt
     2941 gcagctttgc aggaagctgc acaacaacgt gcggcgcaag ccgacgcgca agccaccagc
     3001 acgaccggtg gcaccaccag cagcaccggc gccaccggaa gttccaattc gacggtgagc
     3061 ttgtcggcgt tgtcgacgga tttgcgcacg tcgggcagct ccgacatcga tacggcgaaa
     3121 gtcgcgtcga tcaaggccgc gctcaacgac ggcagctaca aggtcgattc gggcaagatc
     3181 gccgacggca tgctcagcag cgcacgtgaa ctgatgcaaa cgaacacccc gccggccggc
     3241 ggctgagcat agcggccatg tgttgcaggc gacgcgcaga gcgagcccgc ggcacaggga
     3301 cgataggttt cagataaacg catcgtttcc acgatgcagc gccgggcggc tttttttgac
     3361 cttggcaccg ctatgaatgc gggccggagt ttttagcgag tcgcccatga aagacgccct
     3421 gcttgccact gttatcgacg aaaccgctgc cgtccaggcg tttgagtcgc tgctggtcca
     3481 cgaagagaaa gcgctcattg cggcctcgcc gctcgatacg ctgccttcga tcatcgaaca
     3541 aaaaactgcg ttgaccgagc agcttgccgc actggaacgc cagcgcgacg agcaacttga
     3601 tgcgctcggg ctgccgaagg gttttgtcgg catggagcaa gccgtgaccg gcgatgaagc
     3661 gctcgcctcg cattggcaga aattgctcgc ggcggcggga cgtgcacggc gcggcaacaa
     3721 cagcatcggc gtgctgatc
//
LOCUS       DATGBK010000834         2229 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_287918, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000834 DATGBK010000000
VERSION     DATGBK010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287918"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..653
                     /locus_tag="VKJ77_11630"
     CDS             <1..653
                     /locus_tag="VKJ77_11630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HMC45962.1"
                     /translation="LVDVHPHVVTLHDVEFGDRPGCMAQRFADFCRDDLALSAPVLDN
                     GITAPASLVHRRNTKRVMIHPEASTEDKRWFSHRFVRLAQRLRKRGYDVQFVIAPHER
                     ERWRDLATLDIPAPHFANLHELACCVYESGWFIGNDSGIGHLASNLGIPSLSLFRRRR
                     VAERWRPAWGVVDVVLPWQWVPTAYLKEKLWRQTLTCNRVLAAFVRLTRQAARTYG"
     gene            complement(709..1500)
                     /locus_tag="VKJ77_11635"
     CDS             complement(709..1500)
                     /locus_tag="VKJ77_11635"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC45963.1"
                     /translation="MKTRIFFVEANPAIHGNLRDVLESRYMDVHTLSSGSALIGRMEH
                     DVPALIVLRDGLPDMRASAVLRALQQAGHDTPVIVIGDTLDSVELIICLELGADDYIR
                     MPCNPRELLSRVENVLRRAPHKSQTPVHAMGRCDIGDFVLDFRARMLTRHGVPVAMHS
                     STFALLRLFAEHPLEVLSRRIIADKLRGAGEGHCDRSLDVLVCRLRRIVEADPSTPRL
                     IQTIRGRGYVFTPSGLSAAPMDYDELDVMPPEPAWKRVAAVNSYA"
     gene            complement(1577..1942)
                     /locus_tag="VKJ77_11640"
     CDS             complement(1577..1942)
                     /locus_tag="VKJ77_11640"
                     /inference="COORDINATES: protein motif:HMM:NF022516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2866 domain-containing protein"
                     /protein_id="HMC45964.1"
                     /translation="MQTAWSVQPTSSNVFGRIASPSRDNGNRPAPKSPAAASVSAAQR
                     VIKLRGARVSETLPRPWGECCRIVEWVNREGQYSCLAVPGDASEDEIRDRMRSHRNGP
                     QYLVTDDRELPARVVLPRA"
BASE COUNT          433 a          685 c          702 g          409 t
ORIGIN      
        1 atctcgtcga tgtccatccc cacgtggtca cattgcatga cgtcgaattc ggcgaccgtc
       61 cgggctgcat ggcgcagcgc ttcgctgact tctgccggga cgatctggcg ctgagtgcgc
      121 ccgtgctgga taacgggatt acggcgcctg caagcctcgt gcatcgcagg aacaccaagc
      181 gcgtgatgat tcatcccgag gccagcaccg aggacaagcg ctggttctcg caccgcttcg
      241 tgaggcttgc ccagcgcctg cgcaagcgcg gttatgacgt gcagttcgtg atcgcgccgc
      301 atgagcgcga acgctggcgc gatctcgcga cgctggatat tccagccccc cattttgcga
      361 acctgcacga gcttgcctgc tgcgtgtacg agtcgggctg gtttatcggc aacgactcgg
      421 gcatcggcca tctcgcctcg aatctcggca ttccgagcct gagcctgttc cggcgtcgcc
      481 gggtggccga acgctggcgg cccgcgtggg gcgtggtcga tgtggtgttg ccgtggcagt
      541 gggtgccgac cgcgtatctg aaagagaaac tatggcggca aacgctgacg tgcaaccgcg
      601 tgcttgcagc attcgtgcgg ctgacccggc aggcagcccg cacatacggt tagacggagt
      661 ggaagggaac gcgtagaggg aacgataagg gaatggacaa cgcagcggct aagcgtagct
      721 gttcaccgca gcgacccgct tccacgccgg ttctggcggc atgacatcga gttcgtcgta
      781 atccatggga gcggcgctca gcccggatgg ggtgaagaca taaccgcgac cgcgaatggt
      841 ctggatcagg cgaggcgtcg acgggtcggc ttcgacaatt cgccgcaacc ggcagaccag
      901 cacgtccagc gaacggtcgc agtgcccttc tccggcgccg cgcaatttgt cggcgatgat
      961 gcgtcgggac agcacctcaa gcggatgttc cgcgaagagg cgcagcaacg cgaacgtgct
     1021 cgaatgcatg gcaacgggca cgccgtggcg ggtcagcatg cgggcccgga aatcgaggac
     1081 aaaatcgcca atgtcgcacc gtcccatggc atgcaccggc gtctgggatt tgtgcggtgc
     1141 gcggcgcagc acgttctcga cccgcgacag cagctcgcgt ggattgcaag gcatcctgat
     1201 gtaatcatcg gcgcccagtt caaggcatat gatcagttcc accgagtcga gcgtgtcacc
     1261 gatcacgatc accggcgtgt catggccggc ctgttgcagc gcccgcagga cagcagacgc
     1321 tctcatgtcg ggcaagccgt cgcgcagcac gatcagcgcc gggacgtcgt gctccatgcg
     1381 cccgatcaac gcgctgccgc tgctgagcgt atgaacgtcc atgtagcggc tttccaggac
     1441 atcgcgaaga ttcccgtgga tggcgggatt tgcctcgaca aaaaagatgc gtgttttcat
     1501 ctgtgtttcc taagcgtttg atgctttcgg tgttagcggt cggagtcaat gccccaacca
     1561 ctcccccgga cctcaactaa gcccgcggca ataccacccg cgccggcaac tcacggtcgt
     1621 ccgtcacgag gtactgcggg ccgttcctgt gcgagcgcat gcgatcgcga atttcatctt
     1681 ccgatgcgtc gcccggcacc gcgagacacg agtactgccc ttcgcgattg acccattcca
     1741 caatcctgca gcactcgccc cacggccgcg gcagcgtttc ggacacgcgt gcaccacgca
     1801 gcttgatgac ccgttgcgcc gcgctcacgg aggcggctgc gggcgacttc ggcgccggcc
     1861 gattaccgtt gtcacgggac ggcgacgcga tgcgtccgaa gacgttcgat gaggtaggct
     1921 gaacgctcca agcggtttgc atgtgttctc tccagaatcg acaatgaatc ggcagttgaa
     1981 tcagctttga gtgagggggt gaatgacccc attggcagga tcgaatacta gtcaggcatc
     2041 acgcactgac aatgaacaaa agaaggagaa atcgtggagg ttgcgcggga acgtcgcgcg
     2101 aacgtgaggc agcttgcctg tttccactag aatccgcgaa tgcacagcga aacacatagc
     2161 gaaccactcg gcgcacaggc cggctcatcg acgggcccat ccgtgggctc atctatagcc
     2221 tcatcgatg
//
LOCUS       DATGBK010000835         3667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_102480, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000835 DATGBK010000000
VERSION     DATGBK010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3667
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102480"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VKJ77_11645"
     CDS             complement(<1..224)
                     /locus_tag="VKJ77_11645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC45965.1"
                     /translation="MHFGRAAGRLAMTQPPLSQAIRALEDMLGVALFVRTKRSVELTP
                     VGKDLLPEVRRLLAGADALRPLAQSLARGEA"
     gene            391..2064
                     /gene="ilvD"
                     /locus_tag="VKJ77_11650"
     CDS             391..2064
                     /gene="ilvD"
                     /locus_tag="VKJ77_11650"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011694362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HMC45966.1"
                     /translation="MAFNRRSKNITQGIARSPNRSMYYALGYKEEDFDKPMIGIANGH
                     STITPCNSGLQKLADAAVESIRKSDANPQTFGTPTISDGMSMGTEGMKYSLVSREVIA
                     DCIETAVQGQWMDGVVVIGGCDKNMPGGMIGLARMNVPGIYVYGGTIRPGNWKGVDLT
                     IVSSFEAVGEFSAGRMSKEDFDGIEKNACPSSGSCGGMYTANTMSSSFEALGMSLMYS
                     STMANPDEEKVTSAAESARVLVEAVKADLKPRDIITKKSIENAVALIMATGGSTNAVL
                     HYLAIAHAAEVEWSIDDFERMRKKVPVICNLKPSGQYVATDLHKAGGIPQVLKILLDA
                     GMLHGDCITITGKTIAEELKDVPSKPRADQDVIFPINKALYDEGHLAILKGNLAPDGA
                     VAKITGLKNPVITGPARVFEDEQSAMTAIVAGQIKAGDIVVLRYLGPKGGPGMPEMLA
                     PTSAIIGQGLGESVGLITDGRFSGGTWGMVVGHVAPEAFAGGTIAFIKEGDSITIDAH
                     KLLLQLNVDDAEIERRRGEWTQPAPRYTRGVLAKYAALALPANKGAVTG"
     gene            complement(2221..2634)
                     /locus_tag="VKJ77_11655"
     CDS             complement(2221..2634)
                     /locus_tag="VKJ77_11655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007000102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2486 family protein"
                     /protein_id="HMC45967.1"
                     /translation="MPITTVPDTAETPENFDSSIPVLTDVIAPGRPDRARVAPRAPEP
                     VLSPAAVPSHEELAHGADRDADVIADRLRGRFTHFLTGEGRALIEQRCRESLQEHSTW
                     LVSQITREVALALETELTQWVREAVADELERRGRQ"
     gene            complement(2773..3198)
                     /locus_tag="VKJ77_11660"
     CDS             complement(2773..3198)
                     /locus_tag="VKJ77_11660"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HMC45968.1"
                     /translation="MTRIDFHSNVGDSIAYACRLVRKAYLSGQPLIVLAEPERLKRFD
                     EQLWTFKPLEFVPHCMADSALAADTPVLLTASLESLVPNLQHQILLNLGATVPPQFAR
                     FERLLEVVGNEEQELVAGRDRYRFYRDRGYVLNNYKQGD"
     gene            complement(3236..>3667)
                     /locus_tag="VKJ77_11665"
     CDS             complement(3236..>3667)
                     /locus_tag="VKJ77_11665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HMC45969.1"
                     /translation="LILCDALTYVERFKPAAVIDIATLTGACVVALGHHNTALFSKDD
                     ALAGELLDASKEAIDPTWRMPLDDEYQDLLKSNFADVANIGGRPGGAITAACFLSRFA
                     QNYPWAHLDIAGTAWKSGAAKGATGRPVPLLTQFLVDRAGQ"
BASE COUNT          734 a         1150 c         1123 g          660 t
ORIGIN      
        1 gcctcgcccc gcgcaagcga ctgggcgagc ggtcttaacg catccgcgcc ggcgagcagg
       61 cgccgcacct ccggcagcaa gtccttgccc acgggcgtca gctcgacgga acgcttcgta
      121 cgtacaaaca gcgccacgcc gagcatgtct tccagcgccc ggatggcctg cgacaatggc
      181 ggctgcgtca tcgcgaggcg ccctgcggct cgtccgaagt gcatttcttc ggcaaccgtc
      241 acaaaatacc gcaacaatct gagttcgatg ttccgcgttt ccactgatat gttccgcgac
      301 ctagtagacc ctgaataata tattggacac gcgttcgcac aagcttcatc ctttcgcgac
      361 cagacaataa aattctcaag gagcccccac atggccttca atcgccgctc gaaaaacatc
      421 acgcaaggca tcgcgcgttc cccgaatcgc tcgatgtatt acgcccttgg ctacaaggaa
      481 gaagacttcg acaagccgat gatcggcatc gccaacggtc attccaccat cacgccgtgc
      541 aactccggcc tgcaaaagct cgccgatgcc gccgtcgaat cgatccgtaa atcggacgca
      601 aatccacaga ccttcggcac gccgacgatc tcggacggca tgtcgatggg caccgaaggc
      661 atgaagtact cgctcgtatc gcgcgaagtg atcgccgact gtattgaaac ggccgtacaa
      721 ggccagtgga tggacggcgt ggtcgtgatc ggcggctgcg acaagaacat gccgggcggc
      781 atgatcggcc tcgcgcgcat gaacgtaccg ggcatctacg tgtacggcgg cacgatccgt
      841 ccgggcaact ggaagggcgt ggacctgacc atcgtgtcgt cattcgaagc cgtgggggaa
      901 ttctcggccg ggcgcatgtc gaaggaagat ttcgacggca tcgagaaaaa cgcctgcccg
      961 tcgagcggtt cgtgtggcgg catgtacacg gccaacacca tgagctcgtc gttcgaggcg
     1021 ctcggtatgt cgctgatgta ttcatcgacc atggcgaacc ccgacgaaga aaaggtcacc
     1081 tccgcggcgg aatcggcgcg cgtgctggtc gaagcggtca aggccgatct caagccgcgc
     1141 gacatcatca cgaagaaatc gatcgaaaac gcggttgcac tgatcatggc gaccggcggc
     1201 tcaaccaatg ccgtgctgca ctacctggct atcgcccatg cagcagaagt ggaatggagc
     1261 atcgacgact tcgagcgcat gcgcaagaaa gtgccggtga tctgcaacct gaagccgtcg
     1321 ggccagtacg tggcgaccga tctgcacaag gccggcggaa ttccgcaagt gctgaagatc
     1381 ttgctcgatg caggcatgct gcacggcgat tgcatcacga tcacgggcaa gactatcgcg
     1441 gaagaactga aggacgtgcc gtcgaagccg cgcgctgatc aggacgtgat tttcccgatc
     1501 aacaaggcgc tctacgacga aggccacctt gcgatcctga agggcaacct ggcaccggac
     1561 ggcgcggttg cgaagatcac cggcctgaag aacccggtca tcaccggccc ggctcgcgtg
     1621 ttcgaggacg agcaaagcgc aatgaccgcg attgtcgcag gtcagatcaa ggcgggcgac
     1681 atcgtggtgt tgcgttatct cggcccgaag ggtggcccgg gcatgccgga aatgcttgcg
     1741 cctacttcag cgatcatcgg ccaggggctg ggtgaatcag tgggcctgat taccgatgga
     1801 cgcttctccg gcggcacctg gggcatggtg gtgggtcacg ttgccccgga agcctttgcg
     1861 ggcgggacga tcgcgttcat caaggaaggg gattcgatca ccatcgacgc tcacaagctg
     1921 ctgttgcaac tgaacgtgga tgacgccgag atcgagcgcc gtcgcggaga gtggacgcag
     1981 cccgctccgc gatatacgcg tggcgtgctg gccaagtatg ctgcgctcgc gttgccggcg
     2041 aacaaaggtg cggtaacggg ctaattgctg gttatttttc gcttggcgcc ggtggaccgt
     2101 ttcaggttct gccagcgccg gcaggaaatt aatgcccgat tagatgcagg attgctgccg
     2161 gatagcggct gcgccgggtc gggcttggct ccggcagcca gtcgccccga aaacccattc
     2221 ttactggcgc cctcgccgtt ccagttcgtc cgccaccgcc tcgcgcaccc attgcgtcaa
     2281 ctcggtttcc agcgccaacg caacctcccg cgtaatctgg ctgaccagcc aggtggaatg
     2341 ctcctgcaac gactccctgc agcgttgctc gatcaacgcc cgcccttcgc ctgtcaaaaa
     2401 gtgcgtgaag cgcccgcgca gcctgtctgc gatcacatca gcgtcgcgat ccgcgccgtg
     2461 ggcaagctcc tcgtgcgatg gcacagccgc cggcgacaac accggctccg gcgcacgcgg
     2521 tgcaacacgg gcgcggtccg gccggcccgg cgcgatgaca tcggtcagca cgggaatgga
     2581 agaatcgaag ttttcgggtg tttcagccgt atcgggcacg gtagtgatgg gcacgagtgg
     2641 actccgtctc tcttgatggc aggctgttgg caacctgatg gcaacctgat gggcaggccg
     2701 actgcgggct aacggcgggc gtttttgcga tcataccgcg tggccgccgc acactgcgac
     2761 tgagcggtgc gctcagtcgc cctgcttgta gttgttgagc acgtagcccc gatcgcgata
     2821 gaaacgatac cggtcgcgcc cagccacgag ttcctgctcc tcgttgccga ccacttccag
     2881 caggcgctca aaccgcgcga actgcggcgg gactgttgcg ccgagattca gaaggatctg
     2941 gtgttgcaga ttcggcacca gcgattccag cgacgcagtc agcaacactg gcgtgtcagc
     3001 cgccagcgca ctgtccgcca tgcaatgcgg cacgaactcg agcggcttga aggtccacaa
     3061 ttgctcgtcg aaccgcttca accgctcggg ttcggccagc acgatcaacg gctggccgct
     3121 caggtaagcc ttgcgcacga ggcggcaggc gtacgcgatc gaatccccga cattcgaatg
     3181 gaaatcgata cgcgtcatgc ccgcgcctcc acgcttgcgc ttcgttcaat cacgctcatt
     3241 ggcccgcgcg atcgaccagg aactgcgtga gcaagggcac cggacgaccg gttgcgccct
     3301 ttgccgcgcc gcttttccac gccgtacctg cgatgtcgag gtgagcccac ggatagttct
     3361 gcgcaaaccg cgacaggaaa cacgccgcgg taatcgcgcc gcccggccgt ccgccgatgt
     3421 tcgcgacatc ggcgaaattc gacttcagca ggtcctggta ttcgtcgtcg agcggcatgc
     3481 gccaggtcgg atcgatggct tccttcgatg cgtccagcaa ctcgcccgcc agcgcgtcgt
     3541 ccttcgagaa caaagctgtg ttgtgatggc caagcgccac cacgcacgcg cccgtgagcg
     3601 tggcgatatc gatgactgct gcgggtttga agcgttccac ataggtcagc gcgtcgcaga
     3661 gaatcag
//
LOCUS       DATGBK010000836         2215 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_102499, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000836 DATGBK010000000
VERSION     DATGBK010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102499"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /locus_tag="VKJ77_11670"
     CDS             <1..407
                     /locus_tag="VKJ77_11670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4126 domain-containing protein"
                     /protein_id="HMC45970.1"
                     /translation="IRIPAGAVLAVGAFGHADPALLTVAALAGGTLAGAAHLAKAGTR
                     ALINLSPEPVSNWVASATEDFGALLGITLALFVPLLCLVLIIAFLLCAGWALPRLVRG
                     VRGGFGRMAKHMVPSVSARVNPGVGRFRSKHD"
     gene            518..>2215
                     /locus_tag="VKJ77_11675"
     CDS             518..>2215
                     /locus_tag="VKJ77_11675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018431533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HMC45971.1"
                     /translation="MTARDWRAGELTMLILALVLAVAALASVGFLGDRMRQGLERDAR
                     QMIAADFVVRADHPVDPSFAAEAAQLKLETATTAIFPSMISAGASGNASAPPVARLAA
                     LKAVSPGYPLRGSVRIATAVNQPGTPAPSIPAPGTVWVDPALLDALKVPVGGTVRVGT
                     REFKVAAVITRELDRGFSFVSFSPRLMMRADELASTGLVTFGSRVTYRLLVAGPDVQV
                     KQFATFARAKVDDGKLRGVALESLQDGQPQVRQTIDRASHFLTLVSLLTALLAAVAIA
                     MASHRFARRHLDGCAAMRCLGVSQGTLRALFIGEFLLVGLLGSAVGVVLGFGGHLVLL
                     DWLGTLVDVELPLPSVWPALQGIATGLVLLLGFAVPPLLPLTRVPPVHVIRRELGDAG
                     RVAWIAYGVGVLLFAGLLVLAAGEWKLGGIVAGGFAGGLVVFGGIARVALWAAARFVR
                     SERVGAGVGWRYALASLERRSGASALQITALGIGLMCLLLIAMTRSDLIAGWRQSTPP
                     DAPNEFLIDVQPDQRAGVTDYLSQHGQADAVLSPMVRGRLIAVNGKAVSPDNYEKADA
                     "
BASE COUNT          297 a          690 c          789 g          439 t
ORIGIN      
        1 tcattcgcat tccggccggc gcagtgctgg ccgttggcgc gttcggtcac gctgacccgg
       61 cgctgctgac cgtggccgca ctcgcaggcg gcacgctcgc gggcgccgcg catctggcga
      121 aagccggcac gcgtgcgctg atcaatttgt cgccggaacc ggtgtcgaac tgggtggcat
      181 cggcgactga ggattttggc gcgttgctcg gcatcacgct cgccttgttc gtgccgctgt
      241 tgtgcctcgt cctgattatc gcgttcctgt tgtgtgccgg ctgggcatta ccgcggctcg
      301 tgagaggcgt gcgcggcggc ttcgggcgga tggccaagca catggtgccc agcgtcagcg
      361 cgcgtgtgaa tccgggcgtc ggccggttca ggagcaagca cgattgagta cgagtagcct
      421 gggcggcgag ttgaagcagg attcgaagca agatcgcaag caggattcag cgcagcaagg
      481 actgagcttc acgcagatcg tgcgtcagtc gttgcgaatg accgcgcgcg actggcgtgc
      541 gggcgagttg accatgctga tcctcgcgct cgtgctggcg gttgccgcgc tcgcgagcgt
      601 cgggtttctc ggcgaccgga tgcgccaggg gctggagcgg gatgcgcggc agatgattgc
      661 tgcggatttc gttgtgcgcg ccgatcatcc ggtcgatccc tcgttcgccg cagaagcggc
      721 acaactcaag ctcgaaaccg caaccaccgc gatcttcccc agcatgatca gcgcgggtgc
      781 atcaggcaat gcgtccgccc cgcctgtcgc ccgcctcgca gcgttgaagg ctgtttcgcc
      841 cgggtatccg ctgcgcggct cggtacgcat cgcgactgct gtcaatcaac cgggcacgcc
      901 cgcaccctct attcccgcgc ccggcaccgt ctgggtcgac cccgcgttac tcgatgcgct
      961 gaaagtgccc gtcggcggta cggtccgggt cggtacgcgc gagttcaagg tggcggcggt
     1021 catcacacgc gaactcgatc gcgggttctc gttcgtcagt ttttcgccgc gcctgatgat
     1081 gcgtgccgat gaactcgcgt ccaccggcct cgtcacgttc ggcagccgcg tgacctatcg
     1141 gttgctggtg gcgggaccgg atgtgcaggt caagcagttc gccacgttcg cccgcgcaaa
     1201 agtggacgat ggcaagctgc gcggcgtcgc actggaatcg ttgcaggacg gccagccgca
     1261 agtgcgtcag accatcgatc gcgctagtca tttcctcacg ctcgtctcgc tgcttaccgc
     1321 gctgctcgcg gcggttgcca tcgcgatggc ctcgcaccgc ttcgcgcgcc ggcatctgga
     1381 tggctgcgcc gcaatgcgct gcctcggcgt gagccagggg acgttgcggg ctttgtttat
     1441 cggcgaattc ttgttggtcg ggttgcttgg cagcgcggtg ggtgtcgtgc tcggcttcgg
     1501 cgggcatctg gtcttgctgg actggctggg aacactcgtc gatgtcgaat tgccgctgcc
     1561 cagcgtctgg cccgcgttgc aggggattgc gacgggactg gtgctgttgc ttggttttgc
     1621 tgtgccgccg ttgctgccac tgacccgcgt gccgccggtc cacgtgattc gccgggagct
     1681 cggcgatgcc ggccgggtag cgtggatcgc ctacggcgtg ggcgtgctgc tgttcgccgg
     1741 cctgctcgtg ctcgcggcgg gcgaatggaa actgggtggg atcgtagcgg gcggattcgc
     1801 gggcggtctg gtcgtatttg gcggcattgc gcgcgtggcg ctttgggcgg ccgcgcggtt
     1861 tgtgcgcagc gaacgtgtgg gtgcgggcgt gggttggcgg tacgcgctgg cgtcgctgga
     1921 gcggcgcagc ggcgcgagcg cgctgcagat cacggcgctc ggcatcggcc tcatgtgcct
     1981 gctgctcatc gcgatgacgc gcagcgacct gatcgcgggt tggcgccaat cgacgccgcc
     2041 ggacgcaccg aacgaatttc tcatcgatgt ccagcctgac cagcgcgccg gcgtcaccga
     2101 ttacctctcg caacatggcc aggcggacgc ggtgttgtcg ccgatggtgc gcggtcgcct
     2161 gatcgccgtg aacggcaagg cggtgagtcc cgacaactac gaaaaggccg acgca
//
LOCUS       DATGBK010000837         5252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148647, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000837 DATGBK010000000
VERSION     DATGBK010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5252
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148647"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..386)
                     /locus_tag="VKJ77_11680"
     CDS             complement(75..386)
                     /locus_tag="VKJ77_11680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011546132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin"
                     /protein_id="HMC45972.1"
                     /translation="MKVVKSREFTAERAWGALDITTMNGVSCRLHWTDAPYKWHVNDG
                     EEVFAVMQGQVRMRVRRDGVEEEVLLDAGDIFHAQIGDEHVAEPVGIARILVIEKEGS
                     V"
     gene            complement(421..1740)
                     /locus_tag="VKJ77_11685"
     CDS             complement(421..1740)
                     /locus_tag="VKJ77_11685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC45973.1"
                     /translation="MVRSGNASGSRAFRKTPNTRAVVAAVIGNALEWYDFVVFSFMTV
                     VISKLFFPTTSDYSSILLTTATFGVAFVMRPIGGIVLGLYADRAGRKAALSLVIALMT
                     LGIFLLAIAPPYAAIGLGAPLIIVFARLLQGFSAGGEFGSATALLIEAAPFSRRGFYG
                     SFQMASQAAALLLGAIVGSIITRNMSPEALMSWGWRVPFILGLIIGPVGFYLRRNMLE
                     TEAFIHAQKMARRATLGEVFREHSREVMCGLGAVIALTVTVYVLIGYLPTFAVKQLKL
                     PFGQSFTALIVGNLLLTVLSPVAGAWSDRIGRKGLSLWSLIITFVIIYPLFAWLSAEP
                     SVARLIIVQGVLSVTLAGYYGPFGALLAELFPAHIRSTGLSIAYNIAVMLFGGFGQFV
                     VTWLIKVTGSPLAPTFYVMAGILLSIIAVAFIPSARHADVDEARALS"
     gene            complement(1959..2270)
                     /locus_tag="VKJ77_11690"
     CDS             complement(1959..2270)
                     /locus_tag="VKJ77_11690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-potential iron-sulfur protein"
                     /protein_id="HMC45974.1"
                     /translation="MKSSRRTFLISSIGVASALAVSRTAFADPVKLAESDSMAQSLGY
                     KLDATTIDKAKFPRYAAGQDCGNCSFYQGKPTDAFAGCPMFAGKQVASKGWCNAYNKK
                     A"
     gene            complement(2450..3550)
                     /locus_tag="VKJ77_11695"
     CDS             complement(2450..3550)
                     /locus_tag="VKJ77_11695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018442666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HMC45975.1"
                     /translation="MDRIECVVIGAGVVGLAVARAMAARGREVIVLEAGEAVGTGTSS
                     RNSEVIHAGLYYPRGSLKADLCVRGRAMLYEYCDAHGVPYNRCGKLLVATARNQLPQL
                     TAIQNRAVENGVTDLVRVSGAEAMEMEPQLQCVEAFFSPQTGIIDSHQFMLALQGDAE
                     RDGATVAFHTPVMDIDARDGAFIVETGGEAPMAFQAGCVVNSAGLSANQIARTIRGLD
                     ARHVPPLYFAKGNYFTVSGRTPFDRLIYPMPNEAGLGVHLTLDMGGQAKFGPDVEWIQ
                     KIDYAVDPQRAASFYAAIRAYWPNLPDDALQPAYAGIRPKLSGPGQPAADFLIQGRAA
                     HGKAGLVNLFGIESPGLTASLAIAEKVAKMLG"
     gene            complement(3751..4728)
                     /locus_tag="VKJ77_11700"
     CDS             complement(3751..4728)
                     /locus_tag="VKJ77_11700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC45976.1"
                     /translation="MSTAVVKQELAVASFSKVYDLDEVETALNDLSEGGSEALRATYE
                     KMLKAGNLRFCVKPNRMPSIDDLVADLPNFQEPLNDVRKQIALCLETEDRLELMPMLL
                     LGDPGIGKTHFAKQLARLLGTSSHYLAMSSLTAGWILSGASSQWRNAKPGKVFDALVN
                     GSYANPVMTVDEIDKATGDAQYDPLGALYALLEHDTAQSFIDEFAEIPINAGNVVWIA
                     TANQANTIPEPLLNRMNVYEIAPPDRDGARRIAQSIYHEIRSAHAWGARFPETLGDAP
                     LDALTQASPRAMRRAMLNAFGNARIDNRHEVQARDIELGNGGRKKSIGF"
     gene            complement(4822..>5252)
                     /locus_tag="VKJ77_11705"
     CDS             complement(4822..>5252)
                     /locus_tag="VKJ77_11705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45977.1"
                     /translation="RAGEAVDLLTVLQNLQFPFDRLRRRTLRKGAERRGDRGAEQQRR
                     RVVFQHMCFSPDPLLRLGHGPFDPGSVLVTLTLTLIRCGRSARNVSKSYGANAKTAAM
                     LCVQSNTATHFPHPLEPAFSAVQLVDHTSAWARLPKPSHF"
BASE COUNT         1115 a         1633 c         1468 g         1036 t
ORIGIN      
        1 tgcgggtcct gcatgcgtag acgccatgcg ttctctctgg ccggaaagcc tcggcagccg
       61 caggagaacc tgtttcaaac gctcccttct ttctcgatca ccaggattcg tgcaataccc
      121 accggttcgg cgacgtgttc atcgccgatc tgggcgtgaa agatatcgcc ggcatcgagc
      181 agcacttctt cctccacgcc gtctcgcctc acgcgcattc gcacctggcc ctgcatgacc
      241 gcgaagactt cttcgccgtc gttcacgtgc catttatacg gcgcgtcggt ccagtgcaag
      301 cggcatgaaa cgccgttcat cgtggtgata tcaagtgcgc cccatgcgcg ctcagcagta
      361 aattcgcggc tttttacaac tttcattagt catccggcaa gagatcaaca catccagaca
      421 tcaggacaag gcccgcgctt cgtcgacatc ggcgtgacgg gcggaaggga tgaaggcaac
      481 cgcgatgatc gatagcagga tacccgccat tacatagaac gtaggagcga gcggcgaacc
      541 ggttaccttg atgagccacg tcaccacgaa ctggccgaag ccgccgaaca gcatgaccgc
      601 gatgttgtac gcaatcgata accccgtcga gcggatatgc gccgggaaca actcggcgag
      661 caacgcgccg aacggcccgt aataaccggc aagcgtcacc gacaacacac cctgcacgat
      721 aatcaatcgc gccacgctag gttcggcgga aagccacgca aacaacggat aaatgatcac
      781 aaacgtgatg atcagcgacc acagcgacaa acccttccgg ccgatcctgt ccgaccatgc
      841 gcccgctacc ggcgagagca ccgtcaacag caagttaccc acgatcaacg cggtgaacga
      901 ctggccgaac ggcagtttca gttgcttgac ggcgaacgtc ggcagataac cgatcagcac
      961 atacaccgtc accgtcagtg caatgaccgc gccgagtccg cacatcacct cgcggctatg
     1021 ttcgcggaat acttcaccga gcgtcgcgcg ccgcgccatc ttttgcgcat ggataaacgc
     1081 ctcggtttca agcatgttgc gccgcaggta gaaacccacc ggcccgataa tcagccccag
     1141 gataaacggc acgcgccagc cccacgacat cagcgcttcg ggcgacatgt tgcgcgtaat
     1201 gatcgatccg acgatagcac ccagcagcaa cgccgccgcc tggctcgcca tctgaaagct
     1261 gccatagaac ccgcgccgtg agaacggcgc cgcttcgatc agcagcgccg ttgcactccc
     1321 aaactcaccg ccggccgaga agccttgcag caaccgcgcg aacacaatga tcagcggcgc
     1381 gccgagtccg atcgccgcgt agggaggcgc gatcgcgagc aggaaaatgc cgagcgtcat
     1441 caacgcaatc acgagcgaca gcgccgcttt acgtccggcg cgatcggcat ataaaccgag
     1501 cacgatgccg ccaatgggcc gcatcacaaa tgcaacgcca aatgtcgcgg tggtcagcag
     1561 gattgaggaa tagtcgctag tggtggggaa gaacagcttc gagatcacga cagtcatgaa
     1621 gctgaagact acgaagtcat accattcaag cgcgttgcca atcacggccg ccacgaccgc
     1681 gcgtgtgttc ggcgtttttc tgaaagcacg tgagccactg gcgttgcctg atctcaccat
     1741 tgccatatcg ccttcgccgt ggggcgtttc ggttgcgctg ggttttgtcg cgtacgtcga
     1801 agctgcggca tttcgacgcg ttgggtttcg gatgccttgg cgagtgtaaa gagcactgag
     1861 aacgttttca agcggcgaca caaaaacgcg cccggcctgc gtggcggggc gcgtttctcg
     1921 atgatcaccg gttatgttgc tagtctgttc cgggctgctc aggctttctt gttataagcg
     1981 ttgcaccagc ccttcgatgc cacctgcttg cccgcgaaca tgggacatcc ggcgaaggca
     2041 tccgtgggtt tgccttgata gaacgagcaa ttgccgcaat cctgaccggc ggcgtaacgc
     2101 gggaatttgg ctttatcgat ggttgttgcg tcgagcttgt agccgaggct ttgcgccatc
     2161 gaatctgatt cggccagttt gacggggtca gcgaacgcgg tacgcgatac cgccagtgcc
     2221 gatgccacgc caatgctcga aatcaggaac gtgcgtcgtg aggacttcat gagaatgtgc
     2281 tccgttgtat tgggggtgtg cgccgttctt gtcgacgacg atctccacag catatcaatg
     2341 caaagcacga caaactaagc caaatcttat agataaccga tggcgaaagg tcgcagcggg
     2401 cgttgccctc acgccgcatc atgtcgccta acttcaggac acccgcacct caacccagca
     2461 ttttcgcgac cttctccgca atcgccagcg acgccgtcaa cccgggggac tcaatcccaa
     2521 acaagttcac caaccccgcc ttgccgtgcg ccgcccgtcc ctgaatcagg aaatcggccg
     2581 ccggttgccc cggcccggaa agtttcggcc gaatccctgc gtaagcgggc tgtagtgcat
     2641 cgtcggggag attcggccaa tacgcccgaa tggctgcgta aaagctcgcc gcgcgctgtg
     2701 gatcgacggc gtaatcgatc ttctggatcc attccacgtc aggaccgaat ttggcctgcc
     2761 cacccatatc gagggtgaga tgcacgccga gtccggcttc attcggcatc gggtaaatca
     2821 ggcgatcgaa cggcgtccgg ccgctcacgg tgaagtaatt gcctttcgcg aaatacaacg
     2881 gaggcacatg gcgcgcatcg agtccgcgga tcgtgcgcgc gatctggttc gccgacagcc
     2941 ccgcgctgtt gaccacacag ccggcctgga aggccatcgg cgcctcgccc cccgtttcga
     3001 cgataaacgc accgtcgcgg gcatcgatat ccattaccgg cgtatgaaac gccaccgtcg
     3061 cgccgtcgcg ttccgcgtcg ccttgcaacg cgagcatgaa ttgatggcta tcgataatgc
     3121 cggtctgcgg cgagaaaaac gcttccacgc actgaagctg cggctccatc tccatggctt
     3181 cggcgccgct tacgcgcacc aggtccgtga cgccgttttc gacagccctg ttctggatgg
     3241 ccgtcagttg cggcaactga ttgcgcgccg tggcaacgag taatttgccg cagcggttgt
     3301 acgggacgcc atgggcatcg caatactcgt agagcatcgc ccggccacgt acgcataagt
     3361 cggccttcag cgaaccgcgc gggtagtaca gccccgcgtg gatcacctcg ctattgcgcg
     3421 aactcgtgcc agtgccgacc gcttcgcccg cctcgagcac gatcacctcg cggccacgtg
     3481 cggccatcgc ccgcgcgacc gcgagtccga ccacgccggc gccaatcact acacattcga
     3541 ttctgtccat ctcactattc taggccagcc agcgcgaccg cttcgcgcgc tttattgcgc
     3601 tttttgtgcg attggcaata ctcactcgca caaggcatca tttttcgaaa taatccgggc
     3661 caaatcagga aatatggcct ttttgcccgg aaaaagtcag tttcaggcca tattttgacg
     3721 ggtttttgca gatttctcta aaacacccag tcaaaatccg atcgatttct tccgtccacc
     3781 attgcccaat tcgatgtctc gagcctgaac ttcatgccgg ttatcgatac gcgcgttgcc
     3841 aaaagcattg agcatggcac gccgcatcgc tcgcggggaa gcctgcgtca acgcgtcgag
     3901 cggtgcgtcg ccgagtgttt ccggaaagcg cgcgccccac gcgtgcgcgc tgcggatctc
     3961 gtgatagatc gactgcgcga tacggcgcgc gccatcgcga tccggtggcg cgatctcgta
     4021 tacgttcatc cggttcagta acggctcggg aatcgtgttt gcctgattcg ccgtcgcgat
     4081 ccagaccaca ttgccggcgt tgatcggtat ttcagcgaat tcatcgatga aactctgcgc
     4141 cgtatcgtgt tcaagcagcg cgtacaacgc gccaagcgga tcgtattggg cgtcgccggt
     4201 ggctttgtcg atttcatcga ccgtcatcac cggattggcg taactgccgt tcacgagcgc
     4261 atcgaacacc ttgcccggct tcgcgttgcg ccattgcgac gacgcgcccg acaagatcca
     4321 gcccgcggtc agcgaactca ttgccaggta atgcgaggac gtgccgagca aacgtgcaag
     4381 ctgcttcgcg aaatgcgtct taccaatacc cggatcgccg agcagcagca tgggcatcaa
     4441 ttcgagccgg tcctcggttt caaggcacaa cgcgatctgc ttgcggacat cgttaagcgg
     4501 ctcctggaaa ttgggcaagt ccgctaccaa gtcgtctatg gaaggcatgc ggttcggctt
     4561 gacgcaaaag cgcagattgc ccgctttcag catcttttcg tacgtcgcgc gcagcgcctc
     4621 gctgccccct tcgctcaggt cattcaacgc agtttcgacc tcgtccaggt cgtagacctt
     4681 gctgaacgac gccacggcga gttcttgttt gactacggcg gtgctcatcg cgtatccccg
     4741 gatttgttga tcggcaaatc cagtttatcg gccataaaga tgcacgcaag cgagcagtcc
     4801 cgggcgtctg ctgctaatcg cttaaaaatg cgatggcttc ggcagacggg cccaagcgct
     4861 tgtatgatcg acaagttgca ctgcggaaaa agcgggttcg agcgggtgcg gaaagtgcgt
     4921 cgcggtattg gattgaacac acaacattgc tgctgtttta gcattcgcgc cgtagctttt
     4981 ggaaacattt cgcgccgaac gcccgcagcg gatcagtgtc agtgtcagag taacaagcac
     5041 gctacccgga tcgaacgggc catggcccag acgcaataag ggatcaggag aaaagcacat
     5101 atgttgaaac accacacggc ggcgttgctg ttctgcgccg cgatcgccgc gcctttcagc
     5161 gcccttgcgc aaagtacgac gccgcagccg gtcaaatggg aactgcaggt tttgcaggac
     5221 ggtcagcaga tcgacagctt caccggcacg ac
//
LOCUS       DATGBK010000838         1527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148652, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000838 DATGBK010000000
VERSION     DATGBK010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148652"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VKJ77_11710"
     CDS             complement(<1..497)
                     /locus_tag="VKJ77_11710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 family protein"
                     /protein_id="HMC45978.1"
                     /translation="MGTAVNLWPLIGVAVIIVGFILRFNPMLIVAAAAIITGLAAHFP
                     VDRILTAIGTGFLKTRNIPLIILLPLAVIGLLERHGLRERAQIWISGIKAATVGRLLI
                     VYLLVRELTAAVGLTGLGGHPQMVRPLLAPMAEGAAEARFGKLSSETRFKLRAWSAAT
                     DNVGL"
     gene            complement(741..1493)
                     /gene="pxpA"
                     /locus_tag="VKJ77_11715"
     CDS             complement(741..1493)
                     /gene="pxpA"
                     /locus_tag="VKJ77_11715"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HMC45979.1"
                     /translation="MEIDLNADLGEGMGTDEALLDLVSSANIACGWHAGGATAMRDCV
                     RWAVAKGVAIGAHPSFNDPENFGRKEMDIPVYEIYAGVLYQLGALAAIVKAEGGRLSH
                     VKPHGALYNQAAKNPEIAEAIVTAIRDFDPSLLVFGLANSNLVDAARKVNLVAIEEVF
                     ADRGYRADGSLVPRKDPGALLEDEEAVITRTLEMATEHRVQAVSGEWVQINAQTVCLH
                     GDGAHALAFARRIRGALETAGIEVRAAHAAEV"
BASE COUNT          299 a          500 c          448 g          280 t
ORIGIN      
        1 aacaggccga cgttatcggt cgcggcggac cacgcgcgca gcttgaagcg ggtttcgctg
       61 gagagcttgc cgaagcgtgc ttccgctgcg ccttcggcca tgggcgcgag cagcggccga
      121 accatttgcg gatgtccgcc gagaccggtc agcccaaccg ccgccgtcaa ctcgcggacc
      181 agcaaataga cgatcagcag acgtcccacg gtcgccgcct tgatgcctga aatccagatt
      241 tgggcgcgtt cacgcagacc gtgccgttcc agcaaaccga tcacggccag cggcagcaaa
      301 ataatgagcg ggatgttgcg cgtcttgagg aagcccgtac cgatcgcagt gaggatgcga
      361 tcgacgggga agtgcgccgc aagcccggtg atgatggccg cggcggccac gatcagcatc
      421 ggattgaagc gcaggataaa ccccacgatg atgacggcca cgcctatcag tggccatagg
      481 ttgacagcgg ttcccataag atctccaagt gatcgcggta atgccccggt aagggcttct
      541 tccaccgctg gacgaaccgc ttgcttcgag cggaccgttc cgttggcttg ataaaacggc
      601 tctgcggccg cttacgaaaa cgccccgcca atacgcgagg catccaggtt ccttgaggtg
      661 tcagttcgac tcgctgcgcg gcataacgca agcagcaagt caggcgttcg accagcgtga
      721 aagccgctaa cgaccggtca tcaaacctcg gccgcgtgcg cggcgcgaac ttcgatgccc
      781 gccgtttcaa gcgccccgcg aatccgcctg gcgaatgcaa gcgcgtgcgc gccgtcgccg
      841 tgaagacaga ccgtttgcgc gttgatttgc acccactccc cgctgaccgc ctggacacga
      901 tgctccgttg ccatttccag cgtgcgggta atcacggctt cctcgtcctc gagcaatgcg
      961 ccagggtcct tgcgcggaac gagcgagcca tctgcacgat atccgcggtc ggcgaacacc
     1021 tcttcgatcg ccaccaggtt caccttgcgc gcggcatcga cgagattgct gttcgccagg
     1081 ccgaacacga gcagcgatgg atcgaaatca cgaatcgccg tgacgatagc ctcggcaatt
     1141 tccggattct tcgcggcctg gttatacagc gcgccgtgcg gtttcacgtg cgacaagcgg
     1201 ccaccttcgg ccttcacgat cgcggccagc gcgcccaact gatacagcac gcccgcgtaa
     1261 atctcgtaca cgggaatgtc catttccttg cgaccgaaat tctccggatc gttgaaactt
     1321 gggtgcgcgc caatggcgac acccttcgcg acagcccagc gcacgcaatc gcgcatggca
     1381 gtggctcccc ccgcgtgcca gccgcaagca atatttgcgg agctcacgag atcgagcagt
     1441 gcttcgtcgg ttcccatgcc ttcgccgaga tcggcgttca gatcgatttc catcttcgtt
     1501 ccctgttcac ttaccggccg aggcgtt
//
LOCUS       DATGBK010000839         1899 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_102542, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000839 DATGBK010000000
VERSION     DATGBK010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102542"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..698)
                     /locus_tag="VKJ77_11720"
     CDS             complement(<1..698)
                     /locus_tag="VKJ77_11720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase/arogenate dehydrogenase
                     family protein"
                     /protein_id="HMC45980.1"
                     /translation="MAPFSFNKIVIFGVGLIGGSLARALRERAGATGEVVGVGRSIKS
                     VERALELGVIDSAVFLDDDRALELALRDADVVLVAAPVAQTEPLLRRIAPFLDTRTIV
                     TDAGSTKNDVVSAARAALGDRVAQFVPGHPIAGRESSGPDAAIPDLYVDRNVVLCPLP
                     ENAPEAVERVTDMWLATGASVHRMTAAQHDGVFASVSHLPHVLSFALVEMILQAPDAA
                     LKFSFAAGGFRDFTR"
     gene            complement(786..>1899)
                     /gene="hisC"
                     /locus_tag="VKJ77_11725"
     CDS             complement(786..>1899)
                     /gene="hisC"
                     /locus_tag="VKJ77_11725"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HMC45981.1"
                     /translation="TSQFGPSYVRAIAPYIAGKPISEVAREFGLNEADIVKLASNENP
                     LGMPESAKLAMAQAIAELGRYPDANGFDLKAALSERYGVPPEWITLGNGSNDILEIAA
                     HAFVEKGQSIVYAQYSFAVYALATQGLGARAIVVPAVKYGHDLEAMLAAIADDTRLVF
                     VANPNNPTGTFIDGRTLEAFIARVPRHVAIVLDEAYTEYLSKDKRYDSIEWVRRYPNL
                     LVSRTFSKAFGLAGLRVGFAIAQPEQTDLLNRLRQPFNVNTMAQAAAIAALKDTAFLA
                     KSAEINAAGYRRLTEAFDKLGLEYVPSDGNFVMVRVGSDDAAGQRVNLSLLKQGVIVR
                     PVANYGLLPWLRVTIGLPEENDAFIAALEKSLAATA"
BASE COUNT          391 a          612 c          565 g          331 t
ORIGIN      
        1 cgcgtgaaat cccggaaccc gcctgcggcg aacgaaaact tgagcgctgc atccggcgcc
       61 tgcagaatca tctcgacgag cgcgaacgac aacacgtgcg gcaaatggct caccgacgcg
      121 aacacgccgt catgctgcgc ggcagtcatt cgatgcacgc tcgcgccggt cgcgagccac
      181 atgtcggtga ctcgctccac ggcctccggc gcgttctcag gcaacggaca cagcacgacg
      241 ttccgatcaa catagagatc gggtatcgca gcgtccggtc cactcgattc ccggccggcg
      301 atcggatggc ccggcacgaa ttgcgcaacg cggtcgccca gggctgcacg cgccgccgag
      361 acaacgtcat tttttgtgct accggcatcg gtaacgatgg tgcgcgtatc caggaacggg
      421 gcaatccgcc gcagcagcgg ttcggtttgc gcaaccggcg cggcgaccag cacgacgtcg
      481 gcgtcacgca gcgcgagttc gagcgcgcgg tcgtcgtcga gaaacacggc cgaatcgatc
      541 acgccgagtt ccagcgcacg ctcgacggac ttgatggacc tcccgacgcc tacgacttcg
      601 cccgtcgcgc cagcgcgctc gcgcaaggcg cgtgcgagtg atccgccgat caggccgaca
      661 ccaaaaatga caattttatt gaaagagaac ggggccacga gacatcgatg aaaacgcgcc
      721 tttcggcgcg aggggtgaac aatcggaacg acccgtgcgt ttttagaaat gcacgggcga
      781 aacaatcaag cagttgctgc caacgatttt tcgagcgccg cgataaacgc gtcgttctct
      841 tccggcaaac cgatcgtgac acgcagccac ggcaacaaac cgtagttggc gaccggacgc
      901 acgatcacgc cttgcttaag caacgagaga ttcacgcgct gcccggcggc gtcgtcgcta
      961 cctacgcgca ccatcacgaa gttgccgtcg gacgggacgt attccaggcc gagtttgtcg
     1021 aaggcttccg tcagccggcg ataacccgcc gcgttgatct cggcgctctt cgccaggaac
     1081 gccgtgtcct tcaacgcggc gatcgcagcg gcttgcgcca tcgtattcac gttgaacggc
     1141 tggcgcaggc gattcagcag atcggtttgc tccggctgcg caatggcgaa acccacgcgc
     1201 agtccagcca gtccgaacgc ctttgaaaac gtccgcgaca ccagcagatt cggataacgg
     1261 cgcacccatt cgatggaatc gtagcgcttg tccttcgaca gatattccgt gtacgcctcg
     1321 tccagcacga tcgccacgtg acgcggcaca cgtgcaatga acgcctcgag cgtccgaccg
     1381 tcgataaacg tgccggtcgg attattcgga ttcgcgacga acacgagacg cgtgtcgtca
     1441 gcgatggcag cgagcatcgc ttcaaggtca tgaccgtatt tcacagccgg cacgacgatc
     1501 gcacgcgcgc caagaccttg cgtggcgagg gcatagaccg cgaacgagta ttgcgcatag
     1561 acaatcgact gccccttctc gacgaacgca tgcgcggcga tttcgaggat gtcgttgctg
     1621 ccattgccga gcgtgatcca ttccggcggc acgccgtagc gctcgctcaa cgcggctttc
     1681 agatcgaagc cgttcgcgtc cggataacgg ccgagttccg cgattgcctg cgccatcgcg
     1741 agcttcgccg actcaggcat gccgagcgga ttttcattcg acgcgagctt cacgatgtcc
     1801 gcttcgttga gtccgaattc acgcgccact tccgagatcg gtttgccggc aatataaggc
     1861 gcgatcgcgc gcacgtagga ggggccgaat tgcgatgtc
//
LOCUS       DATGBK010000840         3411 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334050, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000840 DATGBK010000000
VERSION     DATGBK010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334050"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VKJ77_11730"
     CDS             <1..318
                     /locus_tag="VKJ77_11730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC45982.1"
                     /translation="PALLDVARMFRYSKLQTVRQVVLPAALPSIFTGIYLALIYSWLA
                     TLGAEYLLVAGSGIGNTLVDGSEQFRMDLVVFGVIVIGITGWALNALARAVQQRWFRD
                     PAV"
     gene            358..1146
                     /locus_tag="VKJ77_11735"
     CDS             358..1146
                     /locus_tag="VKJ77_11735"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003050905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC45983.1"
                     /translation="MATASSTRTSDLNLHHVSKRFAGDDHAVPVLDRIDLSVKSGEFV
                     AIVGASGCGKSTLLRLIAGLDDQFDGDIEFSGERVRTTDLARGIVFQDHRLFPWLNVE
                     QNIAVALKNSGRSKEEKRRAVAEHIALVGLKGNEGHHPHQLSGGMAQRVAIARGLVNR
                     PKLLLLDEPFGALDALTRSRLQNELRRIWEHERITMILVTHDVDEAVFLADRVVVMQA
                     RPGRIGKVVKVDLPRPRSRSDVAFVRLRDEILADFSVPQDVAAA"
     gene            1310..1525
                     /locus_tag="VKJ77_11740"
     CDS             1310..1525
                     /locus_tag="VKJ77_11740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45984.1"
                     /translation="MHYKGYEVAPAAQALPSGLFAANLVIQDEASLQKRAYVFDALDY
                     FFESDLAIAYAARWARMWIDNRRLPRA"
     gene            complement(1576..2523)
                     /locus_tag="VKJ77_11745"
     CDS             complement(1576..2523)
                     /locus_tag="VKJ77_11745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006399712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HMC45985.1"
                     /translation="MNAAVASNTESVQVTPLSAFIGAEISGVDLSQPLDTHQVAQIRA
                     ALLKWRVIFFREQFLTHAQHVAFSAQFGELTLGHPVFGHVEGHPEIYSISKYRKATRF
                     EGQALLRPWTGWHTDVTAAVNPPFASILRGVTIPPYGGDTQWTSLVAAYEKLSAPLRD
                     FVDGLRGVHRFTPPAGASGTTAFQQAVQQRALVTEHPLVRVHPETGERALYVSPSFLK
                     HIVGVTPRESQAILELLWEHVTRPEFTVRFKWEPGSIAFWDNRSTAHLAPSDIFDLEF
                     DRQLYRTTLVGDVPVGPDGRASIALEGSPVNAAAAVALN"
     gene            2798..>3411
                     /locus_tag="VKJ77_11750"
     CDS             2798..>3411
                     /locus_tag="VKJ77_11750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC45986.1"
                     /translation="MNSTIQSSSSLPHERSPVAWIAGVGASAGLGAAVARRFAQGGFT
                     VALTGRTAERVESIAAEIRTAGGVAHALPGDISNETAVAELADRVRELGPLTAAIFNA
                     GGASRAPTLELSAADFEQAWRTGVLGGFLFAQAALRRILNNGLNSASSTGRGSLLFTG
                     ATAALRGKPPFAAFAASKAALRSLSQTLAREFGAEGVHVAHIVI"
BASE COUNT          654 a         1047 c         1015 g          695 t
ORIGIN      
        1 cctgcactgc tcgatgtcgc ccgcatgttc cgctacagca agttgcaaac cgtcagacaa
       61 gtcgttcttc ccgctgcact accgtccatc ttcaccggca tctatctcgc gcttatctat
      121 tcgtggctcg cgacgctcgg cgcggagtat ctgctggtcg ctggcagcgg catcggcaac
      181 acgctggtcg acggcagcga acagttccgc atggatctcg tggtgtttgg cgtgatcgtg
      241 attggcatca ccggatgggc gctaaatgcg ctagcccgcg ccgtccagca acgctggttc
      301 cgtgatccgg ccgtttgatt gcgaaatttc catctttcat aaagagtcca tatcatcatg
      361 gcgactgcct cgagtacccg aacaagcgat ctcaacctgc atcacgtctc caagcgtttt
      421 gccggcgacg accacgcggt gcccgtgctc gatcgcatcg acctgtcggt taagagcggc
      481 gagttcgtgg ctatagtggg tgcgagcggt tgcggcaagt ccacgctgct gcgcctgatc
      541 gcagggctcg acgaccagtt cgacggcgac atcgaattca gcggcgagcg cgttcgcact
      601 accgatcttg cgcgcggtat cgtgttccag gatcacaggc tgtttccgtg gctcaacgtc
      661 gagcagaaca ttgcagttgc gctgaaaaat tcagggcgta gcaaggaaga gaagcgccgt
      721 gcggtagccg agcatatcgc gctggtcggc ctgaagggca atgaagggca tcatccgcat
      781 cagctttcgg gcggcatggc gcagcgcgta gcgatcgccc gagggctcgt caaccggccg
      841 aagctcctgc tgctcgacga gccgttcggc gcgctcgatg cactcacgcg cagccgcctc
      901 cagaacgagt tgcgacgcat ctgggaacac gagcggatca ccatgatcct cgtgactcat
      961 gacgttgatg aagccgtgtt cttggccgac cgcgtggtgg tcatgcaggc gcgaccgggg
     1021 cgtattggca aggtggtgaa agtcgacctg ccaaggccgc gcagccgtag cgacgtcgcg
     1081 ttcgtacgtt tgcgcgatga aatactggcg gacttcagcg tgcctcagga cgtggccgcc
     1141 gcctgatcga agcgttctcc tgggcacatg cttcgcaact ttttcttctt tccaatccct
     1201 ggcaacatcg ggtttgcttc tgccaattgc ttgtttcaca tgttttgcga ggcccgttaa
     1261 tctcggacac atgcattcga ctgcatcgtg taccggaggt aaaacaagca tgcattacaa
     1321 gggttatgaa gtcgctcccg cggcacaagc gctacccagc ggattgttcg ccgccaacct
     1381 cgtgattcag gacgaagcgt cgctgcaaaa gcgcgcttat gtattcgacg cgctcgacta
     1441 cttcttcgaa tccgatctcg ccattgctta tgccgcgcgc tgggctcgca tgtggatcga
     1501 caaccggcgc ctgccgcgcg cttgacgttt tttgccgccc ccgcagtcgc gaggggcggc
     1561 gttccgtaac gggtcttagt tcaatgccac ggctgctgcc gcgttgaccg gtgacccttc
     1621 aagtgcgatc gaagcacgcc catccggtcc tactggcacg tcacccacca gcgttgtccg
     1681 atagagttgc cggtcgaact ccagatcgaa gatatccgac ggcgcgaggt gcgccgtcga
     1741 ccggttgtcc cagaacgcga tgctgcccgg ttcccatttg aaccgcaccg tgaactccgg
     1801 acgcgtcacg tgttcccata gcagttcgag gatcgcctga ctctcacgcg gcgtcacgcc
     1861 aacaatgtgc ttcaggaaac tcgggctgac atacagcgcc cgctcgcccg tttcggggtg
     1921 cacacgcacg agcggatgtt cagtgaccag cgcccgttgc tgcacggctt gctgaaacgc
     1981 agtggtgccg ctggcccccg cgggcggtgt gaatcgatgt accccgcgca agccatcgac
     2041 aaaatcgcgc agcggcgccg agagtttttc atacgcggcg acaaggcttg tccattgcgt
     2101 gtcgccgcca taaggcggaa tggtgacgcc acgtaggatc gacgcgaacg gcgggttaac
     2161 cgccgctgtc acatcggtat gccagccggt ccacggacgt aacaacgcct gtccttcgaa
     2221 acgcgttgcc ttgcgatact tggaaatgga atagatctcg ggatgccctt caacgtgccc
     2281 gaacacagga tgccccagcg tgagttctcc gaattgcgcg gagaacgcca cgtgctgcgc
     2341 atgcgtgagg aactgctctc gaaagaagat cacgcgccat ttcaacaagg ccgcgcgaat
     2401 ctgcgcgacc tgatgagtgt cgagcggctg cgacagatcg acgccactga tttcagcacc
     2461 gataaatgcc gacagcggcg taacctggac cgactcggta ttgcttgcaa cggctgcgtt
     2521 cattgcgtgt ctcctgaagg ggaatcgcca gcttgagatc gggggagttc gggcctttga
     2581 ggttgaaggt caagcatgcg cggcggcatg aaacatcccg acgtttcgat atgcacatta
     2641 cgaccgcctc gcgtcggcct caaccaatcg atccgcatat gcaaaccacg cggaacgcaa
     2701 aagatggctc aggactagaa ttaatctcgc agtgtcgaat aacgttatcg cgttttcttc
     2761 cttcccaatc gccaggagcc ggtctaacgt caccgccatg aactcaacca tccagtcatc
     2821 ttccagtctc cctcatgagc gatcaccggt cgcgtggatc gccggtgtcg gcgccagcgc
     2881 gggactcggc gcagcagtgg cccggcgctt tgcgcagggc ggtttcaccg tcgccctcac
     2941 gggacgcacg gccgaacgcg tggaaagcat cgctgcggag attcgtaccg caggcggtgt
     3001 ggcgcacgca ttgcccggcg acatctctaa tgaaacagcc gtcgccgagc tcgccgatcg
     3061 cgtacgtgaa ctcggtccgc taacggccgc catattcaac gcaggcggtg caagccgagc
     3121 gccaacgctt gaattgagcg cagcggactt cgagcaagca tggcgcaccg gcgtactcgg
     3181 tggtttcctg tttgcccagg cagcgctgcg ccggatcttg aacaacgggc tgaacagcgc
     3241 aagttcaaca gggcgcggct cgctgctgtt cacgggcgct acggccgcgt tgcgcggcaa
     3301 accacccttc gccgcttttg ctgcgtcgaa ggcggcgttg cgttcattga gtcaaaccct
     3361 tgcccgtgag tttggggccg agggcgtaca tgtggcgcat attgtgattg a
//
LOCUS       DATGBK010000841         1770 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148725, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000841 DATGBK010000000
VERSION     DATGBK010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148725"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            111..917
                     /locus_tag="VKJ77_11755"
     CDS             111..917
                     /locus_tag="VKJ77_11755"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC45987.1"
                     /translation="MTSFAGYTRAAAIHEDAGFPVIARDGAHLTLDVYRSADSGLRPA
                     VVLIYGGSWQHGSPADMAARARTYAALGYTAIAVDYRHAPAFQYPTQINDVSDALATI
                     AHNARAWNVDRARVAVMGYSAGAQLALLAAYGPEPLAIKAVVALYAPEDLTQGYNNPP
                     VPDPVNVRASIAHYIGGTPVQDPDAYEAASPLSHVRSGLPATLLIGGARDELVRLEFQ
                     HQMRDRLHLQGDLVISIDLPWSNHSFDEVPNGLGGQIARYYTERFLAATL"
     gene            973..1542
                     /locus_tag="VKJ77_11760"
     CDS             973..1542
                     /locus_tag="VKJ77_11760"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HMC45988.1"
                     /translation="MVKDIALLLARAVVGGGIAAHGAQKAFGAFEGPGPKGAAKYMDG
                     LGLRPGGFYGSAAAWTELTAGTLIVLGLGGPLGPSMLMSTMTVANVTVHMKNGFFASK
                     NGIEFPTLYLSAALAFAGGGYGRLSLDERLGLAKLRTHTITGLILAGGIGAALAILAQ
                     RETPEYKPAQQSQAQTNGARTPEPEPSRN"
BASE COUNT          330 a          573 c          541 g          326 t
ORIGIN      
        1 cgacaatcgc agcagcggat gatgattttc ggcgcgcact tggtcccgac tatgccgtcg
       61 ccgcatccga ccgtcaacgc gcgcgcatga gcgcaacacc ctttagcatc gtgacatcat
      121 tcgcgggtta cacgcgcgcg gcggcgattc acgaagacgc gggatttccg gtgatcgcgc
      181 gcgacggcgc gcaccttacg ctcgatgtgt accgttctgc ggactccggc ctacgtccgg
      241 cggtcgttct catctacggc ggatcgtggc agcatggttc gcctgccgat atggccgcgc
      301 gggcacgcac gtacgcggcg ctcggataca ccgctattgc cgttgattac cggcatgcgc
      361 cggcgtttca gtatccgaca cagatcaacg acgtgagcga tgcgctcgcg accatcgcgc
      421 acaatgcgcg cgcgtggaac gtggataggg cgcgtgtcgc ggttatgggt tattccgccg
      481 gcgcgcaact tgcacttctg gccgcgtacg gacccgagcc gctcgcgata aaagccgtcg
      541 tcgcgctgta tgcacccgaa gatcttacgc aaggctacaa caatccgccc gttccggatc
      601 cggtgaacgt tcgggccagc attgcacatt atatcggcgg gacgcccgtg caagaccccg
      661 acgcatacga agcggcatcg ccgctatcgc atgtgcgctc cggcttgccg gctacgttgc
      721 tcatcggcgg cgcgcgcgat gagctcgtgc gcttggaatt tcagcatcaa atgcgcgacc
      781 ggttacatct acagggagat ctcgttatat ccatcgattt gccgtggagc aaccattcgt
      841 tcgatgaggt tcccaacgga ctcggcggcc agattgcgcg ctattatacc gaacgttttc
      901 tcgcagcaac attataaaat aaagccgcgt gccgggtacg cgcagggcga ttgcgggtac
      961 gagcgcacga ctatggttaa agatatcgcg ttacttctgg cccgcgccgt cgtcggcggc
     1021 ggcatcgcag ctcacggcgc ccaaaaggcc ttcggcgctt tcgagggacc tggcccgaaa
     1081 ggggccgcaa aatatatgga cggcctgggc ctacggcccg gcggtttcta cgggtcggcc
     1141 gccgcttgga cggagctgac ggccggcacg cttattgtgc tcggcctcgg cggcccgctc
     1201 ggaccgtcga tgctcatgtc gacgatgacc gttgccaacg tcaccgtcca tatgaaaaac
     1261 ggcttcttcg cttccaaaaa tgggatagaa tttccgacgc tctacctttc ggccgcgctg
     1321 gcattcgctg gcggcggtta cggccggctc tcgctcgacg agcgcctggg tcttgcgaaa
     1381 ctacgaacgc acacgatcac ggggttgatc ctggccggcg ggatcggcgc ggccctcgcc
     1441 atcctggccc aacgcgaaac ccccgagtac aaacccgcgc agcagtcgca agcccaaacc
     1501 aacggcgcgc gcacgcccga acccgagcct tcgcgaaact gactccccgg agggaaaaga
     1561 aagagcccgg cgcctgagcg ccgggctttc tcgtgtattc gctagagcga aagcttagcg
     1621 gtacgattga cgcgacgaga agcagtcgcg gcagtaaacc ggcttatcgc cacgcggttg
     1681 gaatggcact tgtgccactt gtccgcactg gctgcaggtt gccgagaaca tctcgcgctg
     1741 gggacggcca ccaccgccgc cgccgccgcc
//
LOCUS       DATGBK010000842         4011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334092, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000842 DATGBK010000000
VERSION     DATGBK010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4011
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334092"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..997
                     /locus_tag="VKJ77_11765"
     CDS             77..997
                     /locus_tag="VKJ77_11765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007748203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HMC45989.1"
                     /translation="MNEPQRFTVRHTSIYRYSEPVDFGEHRMMFRPRSSHDLRLVTMQ
                     LKITPEPARLRWLHDIFDNSVAVATFDSQAPELTFESEVTLEHFESPQPDYALERYAA
                     TFPFAYTNEEASDLVNARNRPEPDGDVDAWAKRFVTPGEPMGTMALLRKINQAINDDF
                     KYVRRTEKGVNRPADTLRLRTGSCRDFAVFMIDVVRSLGLAARFVSGYIFVPELDTPL
                     DTPPDAPPDTKRDTTRGGGATHAWLQIYLPGAGWVDFDPTNSIIGNRHLIRVAVAWDH
                     HQALPLWGTWNGEPGSFRSLDVEVSVTENR"
     gene            1026..1829
                     /locus_tag="VKJ77_11770"
     CDS             1026..1829
                     /locus_tag="VKJ77_11770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HMC45990.1"
                     /translation="MKLRVGYELVYECQQPTPMLLMLNTHFSFAPQVLLADLLVVNPP
                     VPISQYRDGFGNLCSRIVAPEGQIALSTSALLEVPDEFEKPGPEGEQHPVENLPNECL
                     VFLLGSRYCETDLLSDFAWKTFGNTPLGRPRVQAICDFVHNHIVFNYAHARPTKTAWE
                     AYNERQGVCRDFAHLAVTLCRAMNIPARYCTGYISDAGMPPPYTAMDFAAWFEAFIGG
                     TWQTFDARNNVPRMGRVLMARGRDAADVAISNTFGPTKLLKFDVVCEEE"
     gene            2132..2968
                     /locus_tag="VKJ77_11775"
     CDS             2132..2968
                     /locus_tag="VKJ77_11775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene/phytoene synthase family protein"
                     /protein_id="HMC45991.1"
                     /translation="MNFDDYCQQKAAPDGSSTYYALRRAPSARQPLLTAFYALRRELE
                     DTVKETSDPTIGRTKHAWWQKELASLFGGEPAHPVTKAIAAHRANTPVLDEQGRESID
                     NLVDGFSMDLDQARYLDWTDLRRYLDNVGGAFALIIARASARRPDDAAGWANSLGTAL
                     MLAERIAEMGDDARHGRIYLPIDEMQRFTVTAADLINRKYSDAFTDLMRFQIGRARDA
                     LEQSLAAIPSDERATQRVLRTQAALSLALFDEIERENFQVLHQRIALTPIRKLWISWR
                     IR"
     gene            complement(3014..>4011)
                     /locus_tag="VKJ77_11780"
     CDS             complement(3014..>4011)
                     /locus_tag="VKJ77_11780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004550279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HMC45992.1"
                     /translation="KREQVIQLDERTGLHPAMQPLMPLWKDRQLAIVQGVSYPQPNLS
                     HFRSIEIWDTGSRSDQYLHEGWLTRTFRAQPVPAGFAADAVVIGSAEMGPLANGARAV
                     ALVNPAQFEKQARLATPVSLKERNPALAHILDVENEIVKAADRLRPRAGQFALKTQFP
                     GGAFGTSIKTAMQVLSATDTPAGVPQTGQGVAVIRLTLNGFDTHQNQPGQQAALLKQL
                     SEGMVAMRSALVELGRWNETLIMTYAEFGRRPRENQSNGTDHGTVAPHFVMGGRVNGG
                     LHGVAPELARLDGNGNLSVGVDFRQMYATVLGPWWGMNSTAVLGQKFETLPLLRA"
BASE COUNT          781 a         1281 c         1173 g          776 t
ORIGIN      
        1 ctgtcgcggt agggtcgcgg agcatgatga ccagcggcct cctgcctgtt ggttttcgct
       61 tgcacggggc agtcaggtga acgagccgca acgctttacc gtaagacaca caagcatcta
      121 ccggtattcg gaaccggtgg atttcggcga gcatcgaatg atgttccggc cgaggtccag
      181 tcacgacctg cgcctcgtca ccatgcagtt gaagatcacg ccggaaccgg cgcgcttgcg
      241 ctggctgcac gatatcttcg acaactcggt ggccgtcgcc acgttcgata gccaggcccc
      301 ggagctgacg ttcgaaagcg aagtcacgct cgagcacttc gaatcgccgc agccggacta
      361 cgcgctcgag cgctacgccg ccactttccc atttgcgtac acgaatgagg aagcgtcgga
      421 tctcgtcaac gcgcgcaacc ggccggagcc ggacggcgat gtcgatgcgt gggcaaaacg
      481 cttcgtcacg cccggtgaac ccatgggcac gatggcgctg ctgcgcaaga tcaaccaggc
      541 gatcaacgac gacttcaagt acgtacgccg cacggaaaaa ggcgtgaatc gtcccgccga
      601 cacgctgcgc ctgcgcaccg gcagttgccg ggacttcgcc gtgttcatga tcgacgtggt
      661 gcgctcgctg ggtctggccg cacgcttcgt cagcggctac atcttcgtgc ctgaactgga
      721 taccccgctg gacaccccgc ctgacgcccc gcctgacacc aagcgcgaca caacgcgcgg
      781 cggcggcgcc acgcacgcgt ggctgcaaat ttatcttccc ggtgctggct gggttgattt
      841 cgacccgacc aacagcatta tcggtaaccg tcatctcatc cgcgtcgcgg ttgcatggga
      901 ccaccatcag gccctcccgc tatggggaac ctggaacggc gagcccggct cgtttcgcag
      961 cctcgatgtc gaggtcagcg taaccgagaa ccgctgatgt cctcttccat agaaaggcca
     1021 ctcccatgaa actccgcgtt ggttacgagc tggtctacga gtgtcagcag ccgacaccca
     1081 tgcttctcat gctgaacacg catttctcgt tcgcgcccca agtcttgctc gccgatctgc
     1141 tggtcgtgaa tcctccggtg ccgatctcgc agtatcgcga tgggttcggc aacctgtgca
     1201 gccggattgt cgcgcccgag ggccagatag cgctgtcgac atcggcgctg ctcgaggtac
     1261 cggatgagtt cgaaaaaccc gggccggaag gcgagcagca tccggttgaa aacctgccca
     1321 acgaatgcct cgtgtttttg ctcggcagcc gttattgcga aacggacctg ctgtcagact
     1381 tcgcctggaa aacgttcggc aatacgccac tgggacgccc gcgagtacag gctatctgtg
     1441 acttcgtgca taaccacatt gtgttcaatt acgcgcacgc gcggccgacc aagaccgcgt
     1501 gggaagcgta taacgagcgt cagggcgtat gccgcgactt cgcgcatctg gccgtcacgt
     1561 tgtgccgcgc gatgaacatt ccggcccgct attgcacggg gtatatcagc gacgccggta
     1621 tgccgccgcc ctacacggca atggatttcg ccgcgtggtt cgaggcgttt atcggcggaa
     1681 cctggcagac tttcgatgcg cgcaacaacg ttccgcgaat gggccgcgtg ttgatggcgc
     1741 gaggccgcga tgccgccgat gttgcgatca gcaatacctt cggccccacc aaactgctca
     1801 aattcgatgt ggtttgcgaa gaggaataac gagtgttttc acttcggata tctaactgaa
     1861 atcacgccgc gcggaatggg ttggcgccac cgcgtggtgg catccgtttc gcccctgcct
     1921 tgcagcacat tcccatccgg gggataattc gtgctgaata tcgcgtgcag tgattcagcg
     1981 taatgagtca gattcccgct gcatcgaaaa agacaaggct gcatcctccc ttacctgtcc
     2041 agtctacaga acacgcgcga gccattgaat ttcaatggct ttttttctga cctggaccga
     2101 tcggctcacg ccgtcatcac cttccattgc cgtgaacttc gacgactact gccagcaaaa
     2161 agccgcgccc gatggctcca gcacgtacta cgcgctgcgc cgtgcgccct cggccagaca
     2221 gccgctcctg acagcgtttt acgcattgcg ccgggagctg gaggacaccg tcaaggaaac
     2281 cagcgacccg accattggcc gaaccaagca cgcctggtgg caaaaggaac tcgccagctt
     2341 gttcggcgga gagcccgccc atcccgtgac gaaagccatt gccgcgcatc gggcgaacac
     2401 gccggttctc gacgagcaag ggcgggaatc catcgacaat ctggtcgatg gtttcagcat
     2461 ggacctcgat caggcacggt atctcgactg gaccgatctg cggcgctatc tggacaacgt
     2521 cggcggcgcg tttgcgttga tcatcgcgcg cgcgagtgca cgccgtcccg atgatgcagc
     2581 gggctgggcc aattcgcttg gcacggcgtt gatgctggcg gagcgcatag cggaaatggg
     2641 cgatgacgcg cgccacggcc gcatttatct tcccatcgac gaaatgcagc gcttcactgt
     2701 aaccgcggcc gatctcatca accgcaaata cagcgatgcg ttcactgacc tcatgcggtt
     2761 ccagatcggc cgcgcgcgcg atgcgcttga gcagtcgctg gccgcgatcc cctcggacga
     2821 gcgcgcgaca caacgcgtgc tgcgtacaca agcggcttta tcgctggcat tgttcgacga
     2881 gatagaacgc gaaaacttcc aggtgcttca tcagcggatt gcgctgacac ctatccgcaa
     2941 actgtggatc agttggcgca tcagataggt tcgcccaagc tcaaactcgc ctgggcttga
     3001 tacgcccgct tggctaagcc cgcagtaaag gcagcgtctc gaacttttgt ccgaggaccg
     3061 cggtggaatt catgccccac cacggcccca gcacggtcgc gtacatttgc ctgaagtcca
     3121 cgccgaccga cagattgcca ttcccgtcca gccgcgccaa ttccggcgcg acgccatgaa
     3181 ggccgccatt cacacggcct cccatcacga aatgcggcgc gaccgtgccg tgatccgtcc
     3241 cgttgctctg gttctcgcgc ggccgccggc caaactcggc ataggtcatg atgagcgtct
     3301 cgttccatcg gcccagttcg accagcgccg agcgcatcgc aaccattccc tccgataact
     3361 gcttgagcaa cgccgcctgc tgacccggct ggttctgatg ggtatcgaaa ccattgagcg
     3421 tcaggcggat caccgcgaca ccctgccccg tttgcggcac accggcaggg gtatcagtag
     3481 cggacagtac ctgcatggca gtcttgatcg atgtcccgaa tgcaccaccc ggaaactgcg
     3541 tcttgagtgc gaactggcca gcccgcggac gcagccggtc agcggccttc acgatttcgt
     3601 tttccacatc caggatatgc gcgagcgcgg ggttgcgttc cttcagcgat accggcgtcg
     3661 caagccgcgc ctgtttctcg aactgcgcgg gattcacgag cgcgacggcg cgtgcgccgt
     3721 tcgcgagcgg tcccatttct gcgctgccga tcaccacggc atcggcagca aatcctgccg
     3781 gcacgggttg cgcgcgaaat gtgcgcgtaa gccagccttc gtgcagatat tgatcagaac
     3841 gcgagccggt atcccagatc tcgatggatc gaaaatgcga gagattcggt tgcgggtaac
     3901 tgacgccctg cacgatcgcg agttgccggt ctttccagag cggcatcaat ggctgcatgg
     3961 cgggatgaag gcccgtgcgc tcatcaagct ggatgacctg ttcgcgcttg a
//
LOCUS       DATGBK010000843         2069 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_172292, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000843 DATGBK010000000
VERSION     DATGBK010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172292"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..284)
                     /locus_tag="VKJ77_11785"
     CDS             complement(39..284)
                     /locus_tag="VKJ77_11785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019937556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HMC45993.1"
                     /translation="MNLQIAKWGNSLALRIPAEYVRRIGVKEGDHVQVDLTIDGGLSI
                     RPSKWDRSAFARELETTREAMPVSQPVIEELRRGARY"
     gene            complement(367..1809)
                     /locus_tag="VKJ77_11790"
     CDS             complement(367..1809)
                     /locus_tag="VKJ77_11790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HMC45994.1"
                     /translation="MQAPDLTRTTSGTANPRGSSVIVMLVAATFFMENLDGTIIATAL
                     PQMARSFGLHPVDLSLGITSYLLTLAVFIPISGWAADRFGLRTVFGSAIALFTVASVL
                     CGMTSTLPTFTAARVLQGIGGAMMVPVGRLAVLRATPKEGLMRAISIITWPGLVAPVI
                     GPPLGGFITTYSSWRWIFYLNLPLGVIGLVVALRYLDNIREHASRRFDFMGFVLCGLA
                     CTTLLYAMELIGRNDTSWVLASALIAVGVLAGVGAWWHVRRAAEPVLDLNALRIKTFK
                     VAMGGGSLFRIAISAAPFLLPLMFQVGFGLNAFESGLLTLSVFAGNLSMKLVTTPVMR
                     RFGFRPVLIVNGILAAVSLAVMSLISPTTPTWIIVAVLFASGLSRSLQFTALNTLSFA
                     DVPKAQMSGASALSSTLFQLTMGIGVALGAIALRLAEWMHGHGAQTVVPADFSIAFLI
                     VGAVGLLGVADLFSLHRDAGAQVSGHGRTG"
     gene            1864..>2069
                     /locus_tag="VKJ77_11795"
     CDS             1864..>2069
                     /locus_tag="VKJ77_11795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45995.1"
                     /translation="MKGRFRRMPTAYRTGAAPWRWASMQHGRGYGSFGIRLAPLEPEP
                     NMGKQAMEYRKLGGTDINVSLIGLG"
BASE COUNT          465 a          643 c          626 g          335 t
ORIGIN      
        1 aagcgccacc aacacagacg tgtctacata agtcgccatc agtaacgcgc gccgcgccgc
       61 aactcttcga tgacaggctg ggatactggc atcgcctcac gtgttgtttc aagctcccga
      121 gcgaaagcgc tgcggtccca tttagagggg cgaatactga ggccgccgtc gatggtcaag
      181 tcaacctgca cgtggtcgcc ttccttcacg ccaatgcggc gcacgtactc ggcaggaatg
      241 cgcagtgcaa ggctattgcc ccattttgca atttgcaggt tcatcttcta cggccccaat
      301 tgatatacgg ttacgtatat acatcatagc accgtattca gtgcatgcag tcccgcacga
      361 cctgagttat cccgtccttc catgcccgct cacctgcgcg cccgcatcgc ggtgcaagct
      421 gaacagatcc gccacaccca gcaatcccac cgcccccacg atcaaaaacg cgatactgaa
      481 atcggccggc acgaccgttt gtgcgccgtg accatgcatc cattcggcca gtctcaaagc
      541 gatcgcgccc agcgcgacgc cgatccccat cgtcaactgg aacaacgtac tggacaacgc
      601 cgacgcgccg ctcatctgcg ccttcgggac atcggcgaaa ctgagtgtgt ttagcgccgt
      661 gaactgcagc gagcgcgaca gcccgctcgc aaacaatacg gcgacgatga tccaggtcgg
      721 cgtcgtcggc gatatcaaac tcatcaccgc cagcgacaca gccgccagga tcccgttcac
      781 gatcagcacc ggacgaaagc cgaagcgccg catgacgggc gtggtgacga gtttcattga
      841 taaattgccg gcgaagaccg acaacgtcag cagtccggat tcgaacgcgt tcagcccgaa
      901 gccgacctgg aacatcagcg gcagcaggaa cggcgccgcg ctgatggcga tgcgaaacag
      961 cgagccgccg cccatcgcca ccttgaaggt tttgatccgc agtgcgttga gatcgagcac
     1021 cggctcggcc gcgcgccgca catgccacca cgcgcccacg cccgcgagca caccgaccgc
     1081 tatcagcgcg cttgcgagaa cccaagacgt gtcgttgcgg ccgatgagtt ccatggcgta
     1141 gagcagggtc gtgcaggcga ggccgcacag cacgaaaccc atgaaatcga agcggcggct
     1201 ggcgtgctcg cggatgttat cgaggtaacg gagcgccacc accaggccaa tcacgccgag
     1261 cggcaggttc agataaaaaa tccagcgcca cgacgaatac gtggtgataa acccgcctag
     1321 aggcggtccg atcacgggcg cgacaagacc cggccaggtg atgatagaga tagcgcgcat
     1381 caagccttct ttgggcgtgg cgcgcaatac cgcgagccgt ccgacgggca ccatcatcgc
     1441 gccgccgata ccctgcagca cacgcgccgc cgtgaacgtg ggcagcgtcg acgtcatgcc
     1501 gcacagcacg gacgcaaccg tgaacagggc gatcgcgctg ccgaacacgg tgcgcaggcc
     1561 gaagcgatcg gcagcccagc cgctaatggg gatgaatacg gcaagcgtca gcagatacga
     1621 cgtaatgccg aggctcaggt cgacggggtg aagtccgaag gagcgcgcca tctgcggcag
     1681 tgccgtggcg atgatcgtgc cgtcaaggtt ctccatgaag aaggtcgccg cgaccagcat
     1741 cacgatgacg gaggaaccgc gcgggttggc cgtgccggac gtggtgcggg tgaggtcggg
     1801 ggcctgcatc gaaggtgtct ctcttgtttg gatcttgaac gagcgcagcg aattgaaaag
     1861 ctaatgaaag gcagatttcg ccgcatgccg acagcttatc ggactggagc ggcaccgtgg
     1921 cgatgggcat cgatgcagca tggccggggc tatggtagct tcggcattcg gctagcgcct
     1981 ttagaacctg aaccgaacat ggggaagcaa gcgatggagt atcggaaact cggtggaacg
     2041 gatatcaatg tcagcctgat cggactggg
//
LOCUS       DATGBK010000844         1961 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218691, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000844 DATGBK010000000
VERSION     DATGBK010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1961
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218691"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..931
                     /locus_tag="VKJ77_11800"
     CDS             161..931
                     /locus_tag="VKJ77_11800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010104508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HMC45996.1"
                     /translation="MTAHVTGTREQWLGARLELLEAEKEFTRRGDELARKRQALPWVR
                     VDKDYRFETHEGSASLADLFQGRSQLLVYHFMFGPDYTAGCPSCSSIADGFNGVVVHL
                     ANHDVTLSAVSRAPFEKLQTYQHRMGWTFPWASSFGSDFNFDFNISLTEQQQREGTVE
                     YNYVREAPVVDIPSRMTPDGATTFAAMSGTDTATYARERPGISAFVLEDGIVYHTYSA
                     YSRGVDGLWGMYQWLDRAPKGRNETGVWWKRHDEYGKR"
     gene            973..1776
                     /locus_tag="VKJ77_11805"
     CDS             973..1776
                     /locus_tag="VKJ77_11805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006158179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2182 domain-containing protein"
                     /protein_id="HMC45997.1"
                     /translation="MSQSMVSERVSQRAFIGVSALLFAASAAVTIVWCASMSAMGEMP
                     MPGGWTMSMAWMRMCGQTWPNAAASFIGMWVAMMVAMMLPSLAPMLWRYRQAFDRTGP
                     GWMTALVGVGYFSVWAVFGMVTFALGSALASLQMQAPALARTVPIASGVVVLIAGALQ
                     FTAWKAHHLACCRVTSRHGCMLQALQADAGTAWRHGLRLGLHCSTCCAGLTAVLLVIG
                     VMDLRAMAAVTAVITVERLAPEGERVARAIGAVVVVAWLAMLVRAMGLG"
BASE COUNT          358 a          594 c          630 g          379 t
ORIGIN      
        1 gcgcacgcgc cgcgaccgca attagtgggt ccatggtcta tccgaatccc gccacacttg
       61 tcactccctc cgttcgatgc ctcgtactaa tctatcacca acccgcatgc ggatcgggag
      121 ttaaacgaac gacgaagaac acctaacgga gggatggacg atgacagcac atgtaaccgg
      181 gacacgtgaa caatggttgg gagcgcgact cgagctgctt gaggccgaga aagaattcac
      241 ccggcgcggc gacgagctgg cgcgcaaacg ccaggcgctg ccgtgggtcc gcgtcgacaa
      301 ggactaccgg ttcgagaccc atgaagggag cgcctcgctg gcagacctct tccaagggcg
      361 ctcccagctc ctggtctatc acttcatgtt cggacccgac tacacggcgg gatgcccgtc
      421 ctgctcgtcg atcgcggacg ggttcaatgg tgtcgtggtg cacctcgcga accacgacgt
      481 gacgctgtcg gcagtgtcgc gggcgccatt cgagaaattg cagacgtacc agcatcggat
      541 gggatggacc tttccctggg catcctcgtt cggcagcgac ttcaacttcg acttcaacat
      601 ctcgctcacg gagcagcaac agcgcgaggg gacggtcgaa tacaactacg ttcgcgaggc
      661 gcctgtcgtc gacatcccct cgcgcatgac acccgacggg gccacaacgt tcgcggccat
      721 gtccgggacc gacacggcta cgtacgcccg cgagagaccg ggcatcagtg cgttcgtgct
      781 ggaggacggc atcgtctatc acacctattc cgcctattcc cgtggcgtgg acggcctctg
      841 gggcatgtac cagtggcttg accgcgcgcc caaagggcgc aacgagacag gtgtctggtg
      901 gaagcgtcac gacgagtacg gcaagcgttg agccaggtcg tgggttgcgt tcgcgcagac
      961 ggggggcgaa agatgtcgca aagtatggta tccgaacgag tttcccagcg tgccttcatc
     1021 ggcgtctcgg cgctgctctt cgccgccagc gcggcggtga cgatcgtctg gtgcgcgtcc
     1081 atgtcggcga tgggcgagat gccgatgccc ggcggctgga cgatgtcgat ggcatggatg
     1141 cgaatgtgcg gacagacgtg gcccaatgct gcggcgtcgt tcatcggcat gtgggtcgcg
     1201 atgatggtgg cgatgatgct gccatccctc gctcccatgc tctggcgcta ccgtcaggcc
     1261 tttgacagga caggaccggg ctggatgact gcgctggtgg gcgtcgggta cttctccgtg
     1321 tgggccgtat ttggaatggt cacctttgcg ctgggcagcg cgctggcgtc gcttcaaatg
     1381 caggcgccag cactcgcgcg cactgttccg attgcgtccg gcgtggtcgt cctgattgct
     1441 ggtgcgcttc agttcactgc gtggaaggca catcaccttg cctgctgccg ggtcacgtcg
     1501 aggcacggct gtatgttgca ggcgttgcag gcagacgccg gcacggcctg gcgacatggc
     1561 ctgcgcctcg ggcttcactg cagcacctgc tgtgccggcc tgacggcggt ccttctcgtg
     1621 atcggcgtga tggatctgcg cgcgatggct gccgtgacgg cagtcattac cgtcgaacgt
     1681 ctcgcaccgg aaggtgagcg cgtggcgaga gctatcggag ccgtcgtcgt tgtggcctgg
     1741 ttggccatgc tcgttcgagc aatggggctt ggatgaagca tcacggtgta cgttcgagcg
     1801 cgatggctca cgctctcggc actcgcttac acctctacgc caaactcagc aaaactgatc
     1861 actttcgcgc cacaagcctg ggaaaaatcc acgtcatagc tcgaaaagaa aaccgttcgg
     1921 tcttcaccca gggtcctgaa caaatcaatc aggacagcgc g
//
LOCUS       DATGBK010000845         2170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56698, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000845 DATGBK010000000
VERSION     DATGBK010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2170
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56698"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VKJ77_11810"
     CDS             complement(<1..181)
                     /locus_tag="VKJ77_11810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC45998.1"
                     /translation="MNIRIDDRDLAAFLVYAARERSLDSSLRAASRYGRSEEHQQSLA
                     ALRELNKKMLFRDTRK"
     gene            complement(214..903)
                     /locus_tag="VKJ77_11815"
     CDS             complement(214..903)
                     /locus_tag="VKJ77_11815"
                     /inference="COORDINATES: protein motif:HMM:NF015146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HMC45999.1"
                     /translation="MNTIDLIEKRVVACRKCPELVAYTADVAREKRRAYRDEVYWGKP
                     VPAFGDPHARVVLIGLAPGAHGSNRTGRMFTGDASGEWLFRALHRAGFASSPLAIDRN
                     DGLQLHDCLITAAVRCAPPQNKPTTEQKARCFPYMAQEFMALRDVRVVVTLGRIADDA
                     FHTLVKTTGSYTTPRAAFAHGAETQVGLPGSPTVTSVASYHPSRQNTNTGVLTEPMLD
                     AIFSRARALLG"
     gene            970..>2170
                     /locus_tag="VKJ77_11820"
     CDS             970..>2170
                     /locus_tag="VKJ77_11820"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46000.1"
                     /translation="MASDKRAMDVRGMALLAFGHVTDDINQSFIAAVLPFLIISLHLS
                     YASAATLVLGQAISSSVIQPAIGLLADRRPLPWLIPVGLLLAGGGIALIGIAPSFALA
                     FCAALVSGIGVACFHPEAERFANFLAGSRKATGMRWFAAGGNVGFAIGPLFATAAIAA
                     WGLHGTLIAFAPVALLALLIFIDIPRLKTFLPARRKAGTHPEYGDDWPSFIRLSFFVT
                     IRSMTYLGMVTFIPLYAIGQLHLSAVIGASLLTTFLMCGVAGTLAGGPLADRFGRRVI
                     LIASMAGACLLVAGFVAITHAGFTPVLVVFALACIMGFVLVASQTSFIVLGQEYLPNH
                     IGVASGVTLGLGVSLGGMFTPVLGLIADHYGLSASLLTVSFLCFVALCIAFTLPPKAR
                     NLPYVRPG"
BASE COUNT          351 a          632 c          680 g          507 t
ORIGIN      
        1 atttgcgcgt gtcgcggaac agcatctttt tgttcagttc gcgaagcgcg gcgagcgact
       61 gctgatgttc ttcgctgcgg ccgtagcggc tcgcggcacg aagcgacgaa tcgaggctac
      121 gttcacgcgc ggcgtagacg aggaaggcgg cgaggtcgcg gtcgtcgatt cggatgttca
      181 tcgttgaagc atggtaccca tcgctgcaac aaattatccg agcagtgcgc gcgctcgtga
      241 gaaaatggcg tccagcatgg gctcggtaag tacgccggtg ttcgtgtttt gccggcttgg
      301 atgataagat gcgaccgagg tcacagtcgg cgagcccggt aagccaacct gcgtctccgc
      361 gccgtgcgcg aaggctgcgc gcggtgtcgt atagctgccg gtggtcttta cgagggtatg
      421 aaacgcgtcg tccgcgattc ggccgagcgt tacgacaacg cgcacgtcgc gcagtgccat
      481 aaattcttgc gccatgtacg gaaaacagcg cgccttctgt tcggtcgtcg gtttattctg
      541 gggcggtgca caacggacgg ccgccgtaat caagcagtcg tgcagttgca agccatcgtt
      601 gcgatcgatt gcgagtggtg agcttgcaaa gcccgcgcga tggagcgcac gaaacagcca
      661 ttcgcccgat gcgtcgccgg taaacatgcg accggtgcga ttgctgccgt gggctccggg
      721 tgctaggcca atcagcacga cccgtgcatg cggatcgccg aacgccggga ccggcttacc
      781 ccagtacact tcatcgcgat acgcccggcg tttctcgcgc gcaacatctg ccgtataggc
      841 aacaagctcg ggacatttgc gacacgcgac gacgcgtttc tcaatgagat cgatggtgtt
      901 catgcgtctt ttgtcgcttc gcgaacgaaa gaatgaactc cggggcccga tgtgggactt
      961 taatgaataa tggccagcga taagcgtgca atggacgtgc gcggcatggc gttgctcgcg
     1021 ttcgggcacg tcaccgacga catcaatcag agttttatcg cagcggtact gccctttctg
     1081 attatctcgc tgcatctgag ctacgcatcg gctgcgacgc tggtgctcgg tcaagccatc
     1141 agttcatccg ttattcagcc cgccatcggg ctactcgccg atagacgtcc cctgccgtgg
     1201 ctcattcccg tgggcctgtt actggcgggc ggcgggatcg cgctgatcgg cattgctcca
     1261 tcgttcgcgc tcgcgttttg cgccgcgctc gttagcggca tcggcgtggc gtgttttcat
     1321 ccggaagctg agcgattcgc aaactttctc gccggctcgc gcaaggcaac gggcatgcgc
     1381 tggttcgcgg ccggcggaaa tgtcggcttt gcaatcggac cgttgttcgc gacagcggcg
     1441 atcgccgcat ggggattgca tggcacgctg attgcgttcg cgccggtcgc gctgctcgcg
     1501 ctgttgatct tcatcgatat cccgcgtctg aagacgttct tgccggcacg ccgtaaggcg
     1561 ggcacgcatc cggaatacgg cgatgactgg ccgtcgttta ttcgattgag tttcttcgtc
     1621 acgattcgtt cgatgacgta tctgggcatg gttacattca ttccgctcta cgcgatcggc
     1681 cagttgcacc tgtcggcggt catcggtgcg tcgctgctga cgacgttctt gatgtgcggc
     1741 gtcgccggca cgctcgcggg cggtccgtta gccgatcgct ttggacggcg cgttatcttg
     1801 atcgcgtcga tggccggcgc atgtttgctc gtcgccggct tcgtcgcgat cacacacgcc
     1861 ggcttcacgc ccgtgcttgt tgtctttgcg ctcgcctgca tcatgggctt tgtgctcgtc
     1921 gcgtcgcaga cgtcgtttat tgtgctcggc caagagtact tgccgaatca catcggcgtt
     1981 gcatcgggcg tcacgctggg cttgggcgtt tcgctcggcg gcatgtttac gccggtgctc
     2041 ggcctcatcg ccgaccatta cggattgagc gcatcactgc taacggtctc gttcttgtgt
     2101 tttgtcgcgc tatgtattgc ttttacgttg ccgccgaaag cgcgcaatct gccttacgtc
     2161 aggccgggaa
//
LOCUS       DATGBK010000846         1913 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218708, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000846 DATGBK010000000
VERSION     DATGBK010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218708"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VKJ77_11825"
     CDS             <1..411
                     /locus_tag="VKJ77_11825"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011885049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC46001.1"
                     /translation="MQAANERMALMENAMAAGTALHLLIFSNERRNVLIGDCHFTNVV
                     RGPFQACHLGYSIDQHYEGRGLMREALAAALGFIFDACALHRVMASYRPENDRSGNLL
                     ASLGFEHEGLAKAYLKIDGQWADHVLTSLVNPKD"
     gene            complement(519..1553)
                     /locus_tag="VKJ77_11830"
     CDS             complement(519..1553)
                     /locus_tag="VKJ77_11830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007741144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HMC46002.1"
                     /translation="MTSATARQIVLASRPTGGRAALSDFRLEQVSVPAPGEGQVLLRI
                     DYLSLDPYMRGRMNDARSYAKPAQIGEAMPGESVATVIESNNTTLPVGAQVLVNAGWV
                     SHAVADARDLSPLSADGIATRAYLGVLGMPGFTAYAGMAAIGKPKSGETVVVGAASGP
                     VGSLVGQLGKIAGARVVGIAGGAKKCSYVVDELGFDAAIDHRAPDFADQLANACPKGI
                     DVYFENIGGAVWKAVLPLLNQYGRVPVCGLMAQTSGNNAGADDALAATMRAILTRSLT
                     MRGYINYEFLPEYRDAFLRDVGGFLRAGQVKHLEDVTVGLENAPQAFLDMIDGRNFGK
                     VLVRVSEEAT"
     gene            complement(1645..>1913)
                     /locus_tag="VKJ77_11835"
     CDS             complement(1645..>1913)
                     /locus_tag="VKJ77_11835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HMC46003.1"
                     /translation="DSASGCHLRVGETCDHVPGFAVKAVDSNGAGDAHAGVFLAVLAT
                     GADARTAARRANAAAAISVTRHGPATSPNAAKIDVFIASNDSAN"
BASE COUNT          378 a          595 c          576 g          364 t
ORIGIN      
        1 atgcaagccg cgaatgaacg catggcgtta atggaaaacg cgatggctgc cggcaccgcg
       61 ctgcatctgc tgattttctc gaacgaacgc cgcaacgtgc tgatcggcga ctgccacttt
      121 acgaacgtcg tgcgggggcc gtttcaggcg tgtcatctcg gctattcgat cgaccagcat
      181 tacgagggac gcgggctgat gcgcgaggcg ctcgccgcgg cgctgggttt tatcttcgat
      241 gcctgcgcgc tgcatcgtgt catggcgagt tatcggccgg agaatgatcg cagcgggaac
      301 ctgctggcca gccttggatt cgaacatgaa gggctggcca aggcgtatct caagatcgac
      361 gggcaatggg cggatcacgt gctgacgtcg ctggtgaacc cgaaagattg agtggtggat
      421 gcggtggagc ggaccgcttg gtcgatcaag tatgaatccc cgatccgaaa ggtttttgtg
      481 atgtgtctac tagtcgtcat ttgtttacgc cgtgtgattt acgttgcttc ttctgacacc
      541 cgaaccagca ccttgccgaa attgcgaccg tcgatcatgt cgaggaacgc ctgcggtgcg
      601 ttctccaacc ccacggtgac atcctccaga tgcttcacct gacccgcacg caaaaagccg
      661 ccgacatcgc ggaggaaagc gtcccgatac tcgggcagga actcatagtt gatataacca
      721 cgcatcgtca ggctgcgcgt aagaatcgcg cgcatggtcg cggcgagggc atcgtcggcg
      781 ccagcgttgt tgcccgacgt ctgcgccatc aatccgcaga cgggaacgcg gccgtattga
      841 ttgagcaaag gcagcacagc cttccacacc gcgccgccga tgttctcaaa ataaacgtcg
      901 atacccttgg gacaggcatt cgccaactga tcggcgaagt cgggcgcacg atgatcaatg
      961 gcggcatcga agccgagttc atccaccaca tagctgcact tcttcgcacc gccggcaatg
     1021 cccacgacgc gcgcgccggc gatcttgcca agctgaccca cgagcgagcc caccgggccg
     1081 cttgccgcac cgaccaccac cgtctcgccg ctcttcggct tgccgatcgc cgccatgccg
     1141 gcataagccg tgaagcccgg catgccgagc acgccgagat aagcgcgcgt cgcaataccg
     1201 tctgcggata atggactcag gtctcgggca tcggccaccg cgtggctgac ccagcccgcg
     1261 ttcacgagca cctgggcgcc caccgggagc gtcgtgttgt tcgactcgat taccgtcgcc
     1321 acgctctcgc ccggcatcgc ttcgccgatc tgcgcaggtt tcgcgtatga acgtgcgtcg
     1381 ttcatacggc cgcgcatgta cggatcgagc gatagatagt cgatgcgcag cagcacctgc
     1441 ccttcccccg gcgcaggcac ggacacttgt tcgagccgga aatcagagag cgcggcacgg
     1501 ccgccggtgg gacgcgaagc caacacgatt tgtcgagcgg tagctgaggt catgcggttt
     1561 ctccaggatg catcgcgggg aaactgagca tatacgcgct tgcgaaatcg cgcttagccg
     1621 cgggggcaga tttgagcgat tcgcttaatt cgctgaatca ttcgacgcga tgaaaacatc
     1681 gattttcgcc gcattcggcg acgttgcagg tccgtggcgc gtcacggaaa tcgccgccgc
     1741 agcgtttgcg cgacgagcag ccgttcgtgc atcggcaccg gtcgcgagca cggcaaggaa
     1801 cacgccggcg tgggcatcgc cggcaccatt gctatcgact gcttttaccg cgaaacccgg
     1861 cacatggtca catgtttcac ccactcgcag atgacacccg gatgcgctat cgc
//
LOCUS       DATGBK010000847         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_264939, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000847 DATGBK010000000
VERSION     DATGBK010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264939"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..685)
                     /locus_tag="VKJ77_11840"
     CDS             complement(<1..685)
                     /locus_tag="VKJ77_11840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HMC46004.1"
                     /translation="MILSGRLSAKLGVLRMALSAVAAVSAVTAVSMVTAPAAHAADPV
                     SINIVDVAGNLQLTQKAFEAFKAKYPQLVSNITFTNAPAPQLPGKIKAMQAAGRSDID
                     LVLTGTDALAAGIEQKLWMKLLPDQAAAFPGVLDKYAPGPRKMQDLAQGYGIEVTYMP
                     AGPLIEYNPAKVTDPPKTPAQLLAWCKAHPDKLIYARPANSGPGRTFLMGLPYVLGDK
                     NPQDPINGWD"
     gene            complement(1152..>2253)
                     /locus_tag="VKJ77_11845"
     CDS             complement(1152..>2253)
                     /locus_tag="VKJ77_11845"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="heavy metal sensor histidine kinase"
                     /protein_id="HMC46005.1"
                     /translation="TIPAYMQRPAVQLQVAAGYSANARTMRAFGLALAALSALGSLGV
                     LLLSYSVTRIGLAPLTRLTRDASAVSPNNRSQRLNTRSLPLELNDLANSFNGALERLD
                     GAYGRLESFNADVAHELRTPVTILIGQTEVALTRNRSVEDLRHTLQSNLEEFERMRAI
                     INDMLFLARADQGERATGLVDTSLAAEVAHTLEFLEIPLEEAHVRAASTGDALVRVNK
                     SLFGRACINLLMNAIQHCAPGSTIKVSITHEGDLVRVAVANPGEPIEPAVLDHLFDRF
                     YRAEVSRTNSRENHGLGLAIVKATAEMHGGKVSATSAGGINTFAFSVAASRGEQERVP
                     GMPAADAPVDVSTGVSSSVSSDVPLQPASASH"
BASE COUNT          449 a          693 c          679 g          432 t
ORIGIN      
        1 tgtcccagcc gttgatcggg tcttgcggat tcttgtctcc gagcacatac ggcaagccca
       61 tcaggaaggt gcggccagga ccggaattag ccgggcgtgc atagatcagc ttgtccggat
      121 gcgccttgca ccacgcgagc aattgggcag gcgttttcgg cggatcagtc accttggccg
      181 ggttgtattc gatcaatggg cccgctggca tataggtcac ttcaatgccg tagccctgcg
      241 ccaagtcctg catcttgcgc ggaccgggcg cgtatttatc gagtaccccg gggaatgccg
      301 cagcctgatc cggcagcagt ttcatccaga gcttttgttc gatacccgcg gcaagcgcgt
      361 ccgtgccggt cagcacgagg tcgatatctg aacgaccggc tgcctgcatc gccttgatct
      421 tgccgggcaa ctgcggcgcg ggtgcgttgg tgaacgtgat gttggagacg agctgcgggt
      481 acttcgcctt gaaggcctcg aacgccttct gcgtcagttg caggttgcct gccacgtcca
      541 cgatgttgat cgacaccggg tccgccgcgt gcgcggcagg tgcggtaacc atagacaccg
      601 cggtgaccgc gctaaccgcc gccacggcgc tcaacgccat gcgcagcacc cccagcttcg
      661 ccgataaacg gccggacaga atcatttcgt ctccctcgct ctttgtatgg attttattgc
      721 ggatcgattc agtccgatgc cgccacgcga cacaaatgga ccgcagccaa ggacagcttc
      781 acagcgcatt tatcgatgta tgttgtcgta tgagaacata actgtcgcag ggcgcgtttt
      841 ctatcaccgt aaacccttaa ccgcgatgcc ttttggtctc ccggcaaagg tcggacagag
      901 ttggccctag cccttatgga tggtcattcc cacgatttga actgcagcag gaccagatcg
      961 atccggaggc agcacggcct cagatcagga tgtgaatatg attaacttcg ttgtacgaca
     1021 acctatcttt taaacgatcg gaaaaacacc gtgctcagtg acacggaaaa gacgaatgaa
     1081 gggattattg cccgagaggg ccgctccccg gcgcgcgaag cgccgggcaa gcgttgatgc
     1141 caacgtcaat ctcagtgact tgccgaggcg ggctgcagcg ggacatcgga cgacacactg
     1201 gatgagacgc cggtcgacac gtcgaccggc gcatcggcgg cgggcattcc aggcaccctc
     1261 tcctgctcgc cacgcgacgc ggcgaccgag aacgcaaagg tgttaatgcc cccggcgctg
     1321 gtagcagaca ccttgccgcc atgcatttcc gccgtcgcct tgacgatcgc caggcccagt
     1381 ccgtggttct cgcgactgtt ggtccgcgag acctcagcgc gataaaaccg gtcgaacaga
     1441 tgatcgagca cggcgggctc aataggctcc cccggattgg cgacggcgac gcgcaccagg
     1501 tcgccttcat gcgtaatcga aaccttgatg gtcgatccag gcgcgcaatg ctggatcgcg
     1561 ttcatcagca gattgataca cgcccggccg aacagcgact tgttcacccg cacgagcgcg
     1621 tcgccggtgg aggctgcgcg cacgtgcgct tcctcgagcg ggatctctaa aaattccagc
     1681 gtatgggcga cttccgcggc aagggatgta tcgacaagcc ccgtcgcgcg ttcaccctga
     1741 tcggcccgcg cgagaaacag catgtcgttg atgatcgccc gcatgcgttc gaactcttcc
     1801 aggttcgact gcagcgtgtg acgcagatct tccacggagc ggttgcgggt cagtgcgact
     1861 tcggtctgcc cgatcaggat ggtgacgggc gtgcgcaact cgtgcgcgac atcggcatta
     1921 aacgattcaa gccgtccgta cgcgccgtca agacgctcaa gcgccccgtt gaatgagttg
     1981 gcaagatcat tgagttccag cggcagcgag cgcgtattca gccgctgcga gcgattattc
     2041 gggctcaccg ccgacgcgtc ccgagtcagc cgcgtgagcg gcgcaagccc gattcgcgtg
     2101 accgaataac tcagcagcag caccccgaga ctgcccaggg cggacaaagc ggccagcgct
     2161 agtccaaacg cgcgcatggt ccgggcgttc gccgaataac cggcggctac ctgaagctgc
     2221 acggcaggcc gttgcatata cgcgggaatc gtg
//
LOCUS       DATGBK010000848         4568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_9981, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000848 DATGBK010000000
VERSION     DATGBK010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4568
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9981"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            800..3124
                     /locus_tag="VKJ77_11850"
     CDS             800..3124
                     /locus_tag="VKJ77_11850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HMC46006.1"
                     /translation="MSHRHLVITLLIPIAGSFWVPLTQAAGVLPQGGQFVAGSGKITS
                     GSSGLSISQTSARGVIDWNTFSIGAGQHVTINNGSGATLNVVTGNSASSISGLLSGTG
                     SVYLINPQGVLVGPTGVITTGGRFVASTLGVSNSAFMNGGALTLSGNGKGTVVNLGAI
                     SSTGGDVFLISRTTVSNQGTVTAANGTAELAAGSQVLLQDSSSGPQVFVQAGSAGQVL
                     NSGTIRAAQINLQAADGNVYALAGSHSVLRATGTASRDGHVWLVANTGNVSAQGTIDA
                     ANAGGSGGTVDMSGKTLNVQGATVDAAQWNLSAPTFTIDAVTASALAQNLSRGTSVAV
                     TTTGAGGTSGDLTVSSGVSWKGAASLALNAHHTVDVGQHVTVANTGSGNLTLRADAAG
                     IDNGGSVINAGTIDWSKSTGIVSALYDMKGSWQPGTIRSNSAWSAAPFSGLLTQVTAY
                     QLVNTLADLNNVSKNLAGIYALGNNIQADPSVAFNPIGGTPTTPFTGQFDGMGHTISG
                     LEYATTNSTSSTGAIGLFSTIGTKGVVRNLGVVNASGTGLFASVGLIAGDNLGLITNS
                     YSTGTVSNGSFGSGSEGGVAGQNGGTIERSWSSASIGTQGSSGGLVGTNNGLILQSYA
                     TGSVSGGSHGVQGGLVGTNSSTGVINQSYTTGSIETSTSAGGLVGNNAGLIEESYSAA
                     TRSAGGLPLAAYGGIAGENTGTIANNVFWNTANTRNAPGVVNGTQIPAANGLTTAQMS
                     VAASFGSSWNFGPNGTWAIPAGATSPVLRWQVEP"
     gene            3205..>4568
                     /locus_tag="VKJ77_11855"
     CDS             3205..>4568
                     /locus_tag="VKJ77_11855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HMC46007.1"
                     /translation="MGAVLIAFAITAAAQSYRDVTPTPPPANAHQPAAPVPPGGDPNA
                     TQVAVETLRGLVFAADHRVQSSVTQAAQGAITAQGLPLLDAPFLAGFSADLGRPMTFG
                     RLAQIRRAVVQRYREAGQPLVDVYVPEQDVSGGVVRIAVASYRLGKVSARGNRYFSDR
                     VLTGEMPLASGESISEAEVTSGLALLNLNPYRTVNVVYAPGAAEDSTDVVLETQDRLP
                     LRLSAGYDNGGVSQLGRDRFFAGIDYGNLFGLDQEIGYQLTTNSDVFNGRPDIFGGAN
                     RPRFVGHSFNYSAPLPWLDRVELFGMYAQSTPDLPDSYGQTGISAQLSFRYDWRIASS
                     GPWQQQLQFGYDFKRSNNNLEFGGFQVFGSNTHIHQFVIAYDATKTDTLGQGAVNATL
                     VLSPGHFDGNDNDMAFNTSRLGATARYAYVQSSAQRDVAIGAGFSLYARGVFQWTPNT
                     LLPS"
BASE COUNT          890 a         1363 c         1415 g          900 t
ORIGIN      
        1 gttctcgatc ggtttctgtc catcactatc agcttcctgg tcgagcattc ctctacttcg
       61 ggggcatgtc gcccggagca atgcgtcatg caaccgcgca gggcgcctgg catcaaattc
      121 gctcagtgcg cggctgacat ggatttgctt ttgtcgtgcg tcgtcaacca cgcgctacta
      181 acgtacattc aataatctaa tagtcgctgt cgccaatttg aaacgtggat gtacggcgta
      241 acccagttgg caggaatgac cgcctacgca tctaagagag gggcctatgg tgcgaacggg
      301 tgtttcaatt actggtttcc gaagtcgggt ttcccgccca gccatttgcg ttggggctgg
      361 agtcaatgcg ctagtgctcg ccgtcgccac ctacgtcgtc aacttgatca accgggtccg
      421 tgtcgtaaag ccgggtcata ttaatagaca aattgagctt ttttacgtgc ccctctaatt
      481 cgggttgacg gagaaaaaag gggtaaacac tatcgcgcag gtcgtcatgt tccactcaaa
      541 acgacatgga gccggtattg gcggcacaac agtgcggtag accacctaat tctaattatt
      601 ctcctgacat attcatcttc gtttcgtgga aatgttttta taatgcatca acgcccggtc
      661 gatattgatt caccacattc catcagtcga tattttcccg gcattaaatg cctgatatcc
      721 cgaccggttg tgtcaggcgt ttcttttgca tgccaggcaa tcccttagcc aaagcggtcg
      781 ttatgccctg gaggaagaca tgtcgcaccg gcatctcgtt atcaccctgc ttatacccat
      841 cgcgggctct ttctgggtgc ctttaacgca agcggctggc gtacttccgc aaggcggcca
      901 gtttgttgca ggcagcggca agatcaccag cggcagttcc ggactcagca tctcgcagac
      961 aagcgcgcgc ggtgtgattg actggaatac cttttcgatt ggtgcggggc aacacgtcac
     1021 gatcaacaat ggctcgggcg cgacgctgaa cgttgtcact ggtaacagtg cttcgtcgat
     1081 tagcggactg ctgagcggga ccggcagcgt atatctgatc aatccgcagg gcgtgctggt
     1141 ggggccgacc ggcgtcatca cgacaggtgg ccgctttgtt gcctcgacgc ttggcgtatc
     1201 caacagcgcg ttcatgaacg gcggagcgct aacgctcagc ggcaatggca agggcactgt
     1261 cgtcaatctc ggcgcgatca gctctaccgg cggcgatgta ttcctgatct cgcgcacgac
     1321 cgtctcgaac cagggcacgg tgacggcggc caacggaacc gccgagcttg ccgccggtag
     1381 ccaggttctg ctgcaggatt cgtcttctgg gccgcaggtg ttcgtgcaag ccggcagcgc
     1441 cgggcaggtc ctcaactcag gcacgattcg ggcggcgcag atcaatttgc aggccgccga
     1501 cggcaacgtg tacgcgcttg ccggaagtca cagcgtgctg cgcgcgacgg gcacagcatc
     1561 gcgcgacggc catgtctggc tggtcgcaaa caccggcaac gtcagcgccc aggggaccat
     1621 cgatgcagca aatgccggag gcagcggtgg cacggtcgac atgagcggca agacgttgaa
     1681 tgtccaaggc gcaacggtcg atgcggcaca gtggaatctg agcgcgccta ccttcacgat
     1741 cgacgcggtg acggccagcg cactcgcgca gaacctgtcg cgcggaactt cagtcgccgt
     1801 gacgacgacg ggcgccggcg gcactagcgg cgacctgacc gtatcgtccg gcgtgagctg
     1861 gaagggtgct gcgtcgcttg cgctgaatgc ccatcacacg gtcgacgtcg ggcagcatgt
     1921 caccgtcgcc aataccggaa gcggcaatct gacgttgcgc gcggatgctg ccggaatcga
     1981 caacggtggc agcgtaatca acgccggcac gatcgactgg tcgaagagca cgggcatcgt
     2041 ctctgcgctc tatgacatga agggtagctg gcaacccggc acgatccgaa gcaatagcgc
     2101 gtggagtgct gctccgttta gcggactgct gacgcaggtc acggcttatc aactcgtgaa
     2161 cacgctcgct gatctgaaca acgtatccaa gaatctcgca ggcatctacg cacttggcaa
     2221 caacatccag gctgatcctt cagtcgcttt caaccctatc ggcggcacac cgactacgcc
     2281 gtttaccggc cagttcgacg ggatgggcca cacgatcagc ggtcttgaat acgcgacgac
     2341 gaattcgacg tcctccaccg gcgccattgg tttgttctcg acaataggga caaagggtgt
     2401 agtgcgcaac ctgggcgtgg tcaatgcatc cggcacgggt ttattcgcaa gtgtcggcct
     2461 cattgcgggc gacaatcttg gtctgatcac gaactcgtac agcaccggga cggtgagcaa
     2521 cgggagcttt ggatcgggca gtgaaggtgg agtggccggt cagaatggcg gcacgatcga
     2581 gcgctcctgg agcagcgcgt caatcggcac ccagggctca tctggcgggc ttgtcggcac
     2641 caacaacgga ctgatcctgc agtcgtacgc cactggctcc gtaagcggcg ggagccatgg
     2701 cgtgcagggc ggactggtgg gtacgaactc gtcgaccggc gtcatcaatc agtcttacac
     2761 gaccgggtcg atcgaaacct caacctcggc gggtggtctg gtcgggaaca acgccggatt
     2821 aattgaagag tcctactctg ctgccacgcg gtcggcggga ggtctcccgc tcgcggctta
     2881 cggcgggatt gccggggaga acacgggcac catcgcgaat aacgtcttct ggaacacagc
     2941 caacacgcgt aacgctccgg gcgtagtcaa cggcacgcag atacccgctg cgaatggttt
     3001 gacgaccgcg caaatgagtg ttgcggccag cttcggttcg agctggaatt tcggtcccaa
     3061 cggaacgtgg gcgatcccgg ccggcgcgac gtctcctgtg ctgcgatggc aagttgagcc
     3121 ttgagcggcc aacgtggcgg gtcgcggccc ggcaagccgc cgggtatcgc gcgtaagcgg
     3181 gcgcatgttg ccgcccacgc gggaatgggc gccgtcctga tcgcttttgc gatcacggcg
     3241 gcggcgcagt cgtaccgtga cgtgacgccc acgccacccc ccgcaaacgc gcaccagccg
     3301 gcggcgccgg ttcctcccgg gggcgacccc aacgccacgc aggtggccgt agagacgctg
     3361 cgcggtctgg tctttgccgc agatcaccgt gttcagtcat ccgtcaccca ggcagcgcag
     3421 ggcgcgatca ccgcgcaggg cctgccgcta ctcgacgcgc cgttcctcgc cggcttctca
     3481 gccgacctcg gccggccaat gacgttcgga cggctcgcgc agatacgccg cgcggttgtg
     3541 cagcgctatc gcgaagcggg gcaaccgctc gtcgacgtgt acgttcccga gcaggatgtg
     3601 tcgggcggcg tagtgcggat tgcggtggcg agttaccgcc tgggtaaggt gagcgcgcgc
     3661 ggaaaccgct atttttccga tcgggtgcta accggagaaa tgccgctcgc cagcggcgaa
     3721 tcgatcagcg aagccgaagt gacgtcgggg ctggcgctac tcaacctgaa tccgtaccgg
     3781 acggtgaacg tggtgtacgc gcccggtgcg gctgaagact cgactgacgt cgtgctggaa
     3841 acgcaagatc gtctgccgct gcgcctgagt gccggctacg acaatggggg tgtgagtcag
     3901 cttggccggg accgcttctt cgccggaatc gactacggca atctgttcgg cctcgatcag
     3961 gagatcggct accagctcac gaccaacagc gacgtgttca acggtcgccc ggatatcttc
     4021 ggcggcgcta accgcccgcg cttcgtaggc cattcattca attacagcgc gccgctgccg
     4081 tggctcgatc gggtcgagct attcggcatg tatgcgcaaa gtacgccgga tctgccggac
     4141 agttatgggc agaccggaat ctccgcacaa ctaagctttc gttacgattg gcggatcgcg
     4201 tcgtcaggac cgtggcagca gcagttgcag tttggctatg acttcaagcg gtcgaataac
     4261 aacctcgaat tcggcggctt ccaggtgttc ggttcgaata cccacatcca tcaattcgtc
     4321 attgcctatg acgccaccaa aaccgacacg ctcggccagg gggcagtgaa tgcaacactt
     4381 gtgctgagtc ccgggcactt cgacggtaac gacaatgaca tggccttcaa cacctcgcgc
     4441 ctcggcgcga cagcgcgata cgcgtacgtg cagtcgtcgg cccagcgcga tgtggcgatt
     4501 ggcgctggct tttcgctgta tgcgcgaggc gtgttccagt ggacgccgaa tacgttgctg
     4561 cccagcga
//
LOCUS       DATGBK010000849         2462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334140, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000849 DATGBK010000000
VERSION     DATGBK010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334140"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..221)
                     /locus_tag="VKJ77_11860"
     CDS             complement(<1..221)
                     /locus_tag="VKJ77_11860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46008.1"
                     /translation="MRHRPFALFWSARVMSSVAFQMMSVAIGWQIYSITHSAFALGLV
                     GLSQFLPMFMLTLVVGHVADRYDRRTIAFV"
     gene            complement(262..1509)
                     /gene="hemW"
                     /locus_tag="VKJ77_11865"
                     /pseudo
     CDS             complement(262..1509)
                     /gene="hemW"
                     /locus_tag="VKJ77_11865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004630944.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
     gene            complement(1506..2117)
                     /gene="rdgB"
                     /locus_tag="VKJ77_11870"
     CDS             complement(1506..2117)
                     /gene="rdgB"
                     /locus_tag="VKJ77_11870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HMC46009.1"
                     /translation="MNALKRVVLASNNPGKLREFAALLSTAGIDLVTQGELGVSEAEE
                     PHVTFVENALAKARHASAATGLPALADDSGLCVHALRGAPGVYSARYAQLLNGGEKSD
                     AANNARLVNDLANESDRRAYFFSVLVLVRHATDPEPLIAEGRWHGEVIDTPRGANGFG
                     YDAHFLVPSLGQTAAELDPAVKNASSHRAIALRHLLTRLKEVS"
     gene            complement(2137..>2462)
                     /gene="rph"
                     /locus_tag="VKJ77_11875"
     CDS             complement(2137..>2462)
                     /gene="rph"
                     /locus_tag="VKJ77_11875"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190734.1"
                     /note="RNase PH; tRNA nucleotidyltransferase; forms
                     hexamers in Bacillus subtilis; phosphoroltic 3'-5'
                     exoribonuclease; involved in maturation of tRNA precursors
                     and removes terminal nucleotides near CCA acceptor arms of
                     mature tRNAs; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HMC46010.1"
                     /translation="VAAHDAVTKLLAAGKIAESPINQFVAAISVGVYNGQPVLDLDYD
                     EDSQCDTDMNVVMTGAGGFVEVQGTAEGVPFTRAEMNALMDLAQSGIETLIAKQKVAL
                     ELLSV"
BASE COUNT          482 a          757 c          739 g          484 t
ORIGIN      
        1 acgaatgcga tcgtgcgccg atcgtagcgg tcggcgacat ggccgaccac cagcgtgagc
       61 atgaacatcg gcaggaattg cgaaaggccg acgagcccga gtgcgaacgc gctgtgtgtg
      121 atcgagtaga tctgccagcc gatagccacc gacatcatct ggaatgcaac cgatgacatc
      181 acccgcgcgc tccagaagag cgcaaagggc cggtgccgca tcacggagcc ggcggtcaca
      241 gcaggggcgg gcgcgttcaa tttaacggtc ttccttgatc gttatcgacg gcgtgtccct
      301 gagaaagagg gcctgcaggt cgttgagaaa atcctgcccg cgttgcgtcg gcgcgacgcg
      361 atcgatgtcg cgcgtgatca agccgcgacg ctccgcttcc accagtcccg attcgattgc
      421 agacatcgcg agcccggttc gttcgttgaa cgaatgcacc ggaaaccctt ccacgagccg
      481 cagcgtgttg agcatgaatt cgaacggcag gtcgcgcggt ccgacctcat gctcttcctg
      541 caccgccgcg ccgccgagcg cttcatccat gtacgttccc ggatgtttgt aacgcacctg
      601 gcgcacgatt ttctgcggaa acgacagctt cgtatgcgcg cccgcaccaa tgccgagata
      661 gtcgccaaag cgccagtagt tcaggttgtg ctggctcttc ctgtgcggct tcgcataggc
      721 cgacacctcg tagcgttcat aaccggccga agtcgtgcgc tcgtgaatcc agtcctgcat
      781 gtcggcggaa gcgtcgtcgt cgggaacggg cggcgggtac ttcgcgaaca tcgtgtttgg
      841 ctcaagcgtc aggtgataca gcgacaaatg cggcggcgcg aaactgatcg ccgtttcaat
      901 atccgtccgg cattcatcga gcgtctgctt gggcagcgcg aacatcaggt cgagattgaa
      961 gttatcgaag tttcttgctg ctatttccac cgcctggcgc gcttgcgttg catcgtgaat
     1021 ccggccgagc gccttcaaat gctgctcgtt gaaactttga atgcctatcg acaaacggtt
     1081 cacgccgctt gcccgaaact gcgcgaactt cgcggcttcg aacgtgccgg ggttggcttc
     1141 gagtgtgatt tcggcgtcgg cgtcgagcgg tagcagcgcg cgtgcgtcag agagcaggcg
     1201 gtccagccct ttcgccgaca gcaaactggg tgtccctccg ccgataaaaa tagtgtgcac
     1261 ctggcggccc cagaccatcg gcaacgcgcg ctcgaggtcg gcacgcaatg catcgagata
     1321 acggtcctcg ggaaacgttt cacccttcca ttcatgcgag ttgaaatcgc actacgggca
     1381 tttgcgcacg caccatggga aatgcacgta caacgacagc ggcggcagcg acgtcagccg
     1441 gatactgccc ggcgacgtga acgccttgat cacgttgatc gcctgaggac cacttgagct
     1501 ggccgtcacg atacttcctt caaccgcgtc agcagatggc gaagcgcaat cgcccgatgg
     1561 ctgctggcgt ttttcacggc gggatcgagt tcggcagcag tttgtcccag cgatggaacc
     1621 aggaaatgcg cgtcataacc aaagccgttc gccccgcgcg gggtatcgat gacttcgccg
     1681 tgccagcggc cctccgcaat cagcggttcg ggatcggtgg catgacgcac cagcacgagg
     1741 acggagaaga aatacgcgcg ccgatccgat tcgttggcga gatcattcac gagccgcgcg
     1801 ttgttcgcgg catcgctttt ctctccaccg ttgagcagtt gtgcataacg cgcggaatac
     1861 acgcccggcg caccgcgcaa cgcatgcacg cagagaccgg agtcgtcggc aagcgcgggc
     1921 aatccagtcg ccgcggacgc atgccgcgcc ttcgccagtg cgttctcgac gaaggtcacg
     1981 tgcggttcct cagcctcgga cactcccagc tcgccttgcg tcacaagatc gatgccggcg
     2041 gtgctcagca gggctgcgaa ttcgcgcaat ttgccggggt tattggacgc gagtacgacg
     2101 cgtttcaatg cgttcaaggc gtgagcggaa gcagaatcag acactgagca actccagcgc
     2161 gaccttttgt ttcgcgatca atgtttcgat accgctttgc gccaggtcca tcagcgcgtt
     2221 catttcagcg cgcgtgaacg gtacgccctc ggccgttccc tgtacttcca cgaaaccgcc
     2281 tgcgccggtc atcacgacgt tcatatcggt gtcgcactgc gagtcttcgt catagtcgag
     2341 atcgagcacg ggctggccgt tgtacacgcc caccgagatc gccgcgacaa attgattgat
     2401 tggcgattcg gcaatcttgc cggcggccag cagcttcgtt accgcatcgt gggccgcgac
     2461 aa
//
LOCUS       DATGBK010000850         3539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_34031, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000850 DATGBK010000000
VERSION     DATGBK010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3539
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34031"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..473
                     /gene="hisB"
                     /locus_tag="VKJ77_11880"
     CDS             <1..473
                     /gene="hisB"
                     /locus_tag="VKJ77_11880"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006400582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HMC46011.1"
                     /translation="LDQIARHGLFDLEVEAHGDLHIDDHHTVEDTGITLGQAVAKAIG
                     DRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLTIEFFRGF
                     VNHAGVTLHIDNLRGINAHHQVETVFKAFGRALRMAVELDERAAGQIPSTKGSL"
     gene            567..1187
                     /locus_tag="VKJ77_11885"
     CDS             567..1187
                     /locus_tag="VKJ77_11885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010092886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HMC46012.1"
                     /translation="MNLLKSFISLLALINPVGAIPFFLSLTTDMSSSEKAGTIRIASI
                     SVFCVIAVTALLGQQIIAFFGISVGSLEVGGGIIMLLMAINMLNAQVGNARSTPEERH
                     EAEMKNSIAVVPLAIPLLTGPGSISTVIVYSASVAHWYDRLGLVVIGAVLAALCFGAL
                     MLAEPIARWVGRTGINIGTRLMGLMLSALAVEFIVNGLKALLPSLK"
     gene            1219..1869
                     /gene="hisH"
                     /locus_tag="VKJ77_11890"
     CDS             1219..1869
                     /gene="hisH"
                     /locus_tag="VKJ77_11890"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HMC46013.1"
                     /translation="MKTSIAIVDYGMGNLRSVYQALRKAAPEADVAIVEQPEAIRAAD
                     RVVLPGQGAMRDCMAHLGASGLQEAVMEAARDKPMLGVCVGEQMLFDWSQEGDAKGTN
                     GLGLIPGKVLRFDLEGQLQDDGSRFKVPQMGWNRVRQTQRHALWDGVPDESFFYFVHS
                     YYGVPDNPAHTSGETLYGAPFTSAIARDNLFATQFHPEKSADAGLRLYRNFVHWKP"
     gene            2042..2794
                     /gene="hisA"
                     /locus_tag="VKJ77_11895"
     CDS             2042..2794
                     /gene="hisA"
                     /locus_tag="VKJ77_11895"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HMC46014.1"
                     /translation="MLLIPAIDLKDGQCVRLKQGDMDQATIFSEDPAAMARLWVDRGA
                     RRLHLVDLNGAFAGKPKNEEAIRAIIKEVGNDIPVQLGGGIRDLNTIERYLDDGLEYV
                     IIGTAAVKNPGFLQDACTAFAGHIIVGLDAKDGKVATDGWSKLTGHEVIDLGRKFEDY
                     GCEAIIYTDIGRDGMLQGINIEATVRLAQAVKIPVIASGGLSNLGDIDSLCEVEDEGI
                     SGVICGRAIYSGDLDFAAAQARADKLREADDA"
     gene            3035..>3539
                     /locus_tag="VKJ77_11900"
     CDS             3035..>3539
                     /locus_tag="VKJ77_11900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012362933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HMC46015.1"
                     /translation="MALAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDDQG
                     ADELTFLDITATSDQRDLILPIIEQVASQVFIPLTVGGGVRAVEDVRRLLNAGADKIS
                     MNSSAVANPQLVRDASDKHGSQCIVVAIDAKRVSVAGETPRWEVFTHGGRKNTGLDVI
                     EWARKMAE"
BASE COUNT          680 a         1021 c         1113 g          725 t
ORIGIN      
        1 tgctcgacca gatcgcgcgt cacggcctct tcgaccttga agtcgaagcg catggcgacc
       61 ttcatatcga tgaccaccac acggtggaag acacgggcat cacgctggga caagcggtgg
      121 caaaggccat tggcgaccgc aagggcattc gccgttacgg ccattcctac gtgccgctcg
      181 acgaagcgct gtcgcgcgtg gtgatcgatt tttcgggccg gccgggactg gagtttcacg
      241 tcccgttcac gcgtgcgcgg attggtacgt tcgacgtcga tctcaccatc gaattcttcc
      301 gcggcttcgt gaatcatgcg ggcgtgacgc tgcacatcga caatttgcgc ggtatcaacg
      361 cgcatcatca ggtggaaacc gtcttcaagg cattcggccg cgcgttgcgc atggctgttg
      421 agctggacga gcgcgcggca gggcagattc catcgaccaa gggcagcctt taagcgcctt
      481 ctaaataacg cgaaaccggc acatatcggg cgtgtttcca agcgcgtccg ggccgtccgc
      541 gtcgatacga gccacgtcgg cctgcgatga atctactcaa atcgtttatt tcgttgctcg
      601 cgctgatcaa tccggtcggc gcgatcccgt ttttcctgag cttgacgacc gatatgtcga
      661 gctcggaaaa ggccggcacg atccggatcg cgtccatttc ggtcttctgc gtgattgccg
      721 tgacggcgct gctcggacag cagatcatcg cgttcttcgg gatttccgtg ggctcccttg
      781 aagtgggcgg cggcatcatc atgttgttga tggcgatcaa catgttgaac gcgcaagtcg
      841 gcaacgcgcg ctccacgccg gaagagcgcc acgaagctga gatgaaaaac agcatcgcgg
      901 tggtgccgct cgccattccg ctgctgacgg gaccgggttc gatcagcacg gtgatcgtct
      961 attctgcaag tgtggcgcac tggtatgacc gtctcgggct ggtcgtgatc ggcgcggttc
     1021 tggcggcgct ctgtttcggc gcgttgatgc tcgccgaacc cattgcgcgc tgggtcgggc
     1081 gtaccggcat taacattggt acgcggctga tgggcttgat gctgtcggcg ctggcggtgg
     1141 aatttatcgt taatggattg aaggcgttgc tgccctcttt gaaatagcgt tctggaacgt
     1201 gctgaattga atacttcgat gaaaacttcg atagcaatcg tggattacgg catgggcaac
     1261 ctgcgctccg tatatcaggc gctccgcaag gccgcgccgg aagcggacgt ggcgatcgtc
     1321 gagcagcccg aagcaatccg cgcagccgac cgcgtcgtgc tgccgggaca gggcgccatg
     1381 cgcgactgca tggcgcacct cggcgcgtcg ggcttgcagg aagccgtcat ggaagccgcg
     1441 cgcgataaac ctatgctggg cgtgtgtgtc ggtgagcaga tgctgttcga ctggagtcag
     1501 gaaggggacg cgaagggcac gaacggcctt ggcctgatac ccggcaaggt cttgcgcttc
     1561 gatctggaag gccaactgca ggacgacggc tcgcgtttca aagtcccgca gatgggctgg
     1621 aaccgcgtgc gccagacgca gcggcatgcg ctgtgggacg gcgtgccgga cgaatcgttt
     1681 ttctatttcg tgcacagtta ttacggcgtt ccggacaatc cggcgcatac gtccggcgaa
     1741 accctgtacg gcgcgccgtt tacctcggcc atcgcccggg acaatctgtt cgcgacccag
     1801 tttcaccccg agaagagcgc ggacgcgggc ttgcggctgt atcgaaactt cgtacactgg
     1861 aaaccgtgaa gttcgcattt ttggtgctgt tttagcggtg gtttgacgtt ttggcttatg
     1921 ccgtttgcag ccgcgagcct tgcatcactt gtactacact agcgagacgg caggcaaaac
     1981 aagggcgctg tgcccaagtt tgcaaccgtt cgattaaccc tcatccgata acgctatttc
     2041 tatgttgctc attccggcca tcgatctaaa agacggtcag tgcgtacgcc tcaaacaagg
     2101 cgatatggac caggcgacca ttttttccga agatccggcg gcaatggccc ggctatgggt
     2161 cgatcggggc gcacggcggc ttcatctcgt cgacctgaac ggcgcgtttg ccggcaagcc
     2221 gaaaaacgaa gaagccattc gcgcaatcat caaggaagtc ggcaacgaca tcccggtgca
     2281 gctcggcggc ggtattcgcg acctgaatac catcgagcgc tatctcgacg acggtctgga
     2341 gtacgtgatc atcggcacgg cggcggtgaa aaatccgggc ttcctgcaag atgcgtgcac
     2401 tgcgttcgcg ggtcatatca tcgtcgggct ggatgcgaag gacggtaagg tcgccaccga
     2461 cggctggagc aagctgacgg ggcacgaagt tatcgacctc ggccgcaagt tcgaagatta
     2521 cggctgcgag gcgatcatct atacggatat cggccgcgac ggcatgttgc agggcatcaa
     2581 cattgaagcc actgtgcgcc tcgcgcaagc ggtcaagatt ccggtgatcg cgagcggcgg
     2641 attgtcgaat ctgggcgaca tcgattccct gtgcgaagtg gaagacgaag gcatttccgg
     2701 cgtgatctgc ggacgtgcga tctattcggg cgatctggat ttcgccgccg cgcaagcgcg
     2761 cgccgacaag ctgcgcgaag ccgacgacgc ttgatccgac gcatgtcgcg agggcggcgc
     2821 gcagtcgtgg gtgggtaccc tgatgacgcg gcgacctttt cagcacgcgt gatttaagcg
     2881 ccttatgtgc ttctggacgg ccttctgctc agcttgctcg aggccgcgtc caagttcagg
     2941 caaggcggcg ctccttcccg cgacggttaa tttcgattaa accgcgtcgc ttatcctaag
     3001 cactctctcg cagcgcaacg gcactcgcac caacatggct ctcgcaaaac gcatcatccc
     3061 gtgtctcgac gtcaccgctg gccgcgtggt caagggcgtc aatttcctcg aattgcgcga
     3121 tgcgggcgat cctgtcgaaa ttgctcgccg atacgacgac cagggcgccg acgaactcac
     3181 gttcctcgat atcactgcca cctccgacca gcgcgacctg atcctgccga tcatcgaaca
     3241 agtggcgtcg caggtcttta tcccgctgac ggttggcggc ggcgtgcgcg cggtggaaga
     3301 tgtgcgtcga ctgctgaacg cgggcgccga caagatcagc atgaattcat ccgcggtggc
     3361 aaatccgcaa ctcgtgcgtg atgcgtcgga taaacatggc tcgcagtgca tcgtggtggc
     3421 tatcgacgcg aagcgcgtta gcgtcgcggg cgaaaccccg cgctgggaag tgttcacgca
     3481 cggcggccgc aagaacacgg ggctcgacgt gatcgaatgg gcgcgcaaga tggcggaat
//
LOCUS       DATGBK010000851         1766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56752, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000851 DATGBK010000000
VERSION     DATGBK010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56752"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..1765
                     /locus_tag="VKJ77_11905"
     CDS             155..1765
                     /locus_tag="VKJ77_11905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007746894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phosphoacceptor
                     domain -containing protein"
                     /protein_id="HMC46016.1"
                     /translation="MNTNRRKKSLGDTAVKENPMDALPPEETIRSAVDRSVSRLRLQH
                     EIAVQFATSVLRVHSADVLLDEACKAVSAGVHSRFAKVLRYQPESENFVLEAGVGWDP
                     ADIGTTELGADDASPAGHALVSGRPVLSNHLGTEHRFRTPELLARHGIKRAINVPIRG
                     IPETFGVLEADSSDDEDFTETDIVFLEAIANVISMSRERLAAESQTDADELFSTSVLN
                     ASTDCIQVLSLDGGIEFMNDNGLTALSIDDFAEVGGTACSDLWPDDQRPKVLQALAKS
                     ASGEPVRFEGPCPTRAGDARWWDVSVAPILDTDERVKRIVLTMRDVTDRHENEEKLAA
                     LVLSQETQLGNSALMMKEVHHRVRNSLQLVQTLLALQANLAGDKSVATHLQAAATRVR
                     TVGSVHHRLYQDDGAEATDATSYLRGLTADLAELAAGREVSLEGKSIVLPAARLAPLG
                     LVTAELVTNALKYGRGTVRVTLERSDDAVLLTVEDEGDGFPIDFPKPQGTGLGMRLVT
                     TYAGKGAGAVSVDRSVPFSRIVVRFPAG"
BASE COUNT          348 a          518 c          578 g          322 t
ORIGIN      
        1 cattttccgg ttaatcgatg cattattcta acaccttgtt gttacgatta taacattcgg
       61 gattataccg agagaggtcg ttcgcacttc accggcgcaa aggaactcac ggccaaataa
      121 gtgacctttt aatctccacg gttagaattg acgcgtgaac accaatcgcc ggaaaaaaag
      181 cctgggcgac accgcggtca aggagaaccc gatggatgca ttgccacccg aagaaacgat
      241 ccgcagtgcc gtcgaccggt ccgtaagccg tctgcgcctg cagcacgaga tcgcagtgca
      301 gttcgcgacg tcggtgttgc gcgtacacag tgccgacgtg ctcctcgatg aagcctgcaa
      361 ggcggtatcg gctggagtgc actcgcgctt cgcgaaggtg ctgcgctatc aacccgaaag
      421 cgaaaacttc gtgctggaag cgggtgtggg ctgggacccg gcggatatcg gcaccacgga
      481 gctcggcgct gacgacgcca gccccgccgg ccacgcgctg gtcagcggcc gcccggtgtt
      541 gtcgaatcac ctgggtacgg aacaccgttt ccgcacgccc gagttgcttg cccggcacgg
      601 catcaagcgt gccatcaacg tccccattcg cggcattccc gaaaccttcg gcgtgctcga
      661 agccgatagc tccgacgacg aagacttcac cgaaacagac atcgtctttc ttgaagcgat
      721 cgcgaacgtc atttccatga gccgagaacg actggccgcg gaatcgcaaa ccgacgccga
      781 cgagctgttc tccaccagcg tgctgaacgc gagcaccgac tgtattcaag tgttgtcgct
      841 ggatggcggt atcgaattca tgaacgataa cggcctgacg gcgctgagca tcgacgactt
      901 tgcggaggtc gggggcacag cttgctccga cctgtggccc gacgatcaac gcccgaaggt
      961 cctgcaggcg ctggcgaaat cggcgagcgg cgaaccggtg cgattcgaag gtccctgccc
     1021 gacccgtgcg ggcgatgcgc gctggtggga tgtatcggtg gcgcctattc tcgataccga
     1081 tgagcgcgtg aagcgcatcg tgctgaccat gcgcgatgtc accgatcggc acgagaacga
     1141 ggagaaactc gccgcgctcg tattgagcca ggagacgcag cttggcaatt cggcgctgat
     1201 gatgaaggag gttcatcacc gggttcgcaa cagtcttcag cttgtgcaga cgttgctcgc
     1261 gctgcaggcg aatctcgccg gcgataaatc cgtcgccacg catttgcagg cagcggccac
     1321 acgcgtgcgc acggtgggct cggtgcacca ccggctctat caggacgatg gcgcggaagc
     1381 cacggatgca accagttacc tgcgcggcct gactgccgat ctggctgaat tggctgcggg
     1441 gcgggaggtg tcgctggaag ggaagtcaat cgtgctgccc gccgcgcggc tggcgccgct
     1501 cgggctggtg acggcggagc tcgtgaccaa tgcgctcaag tacggtcgcg ggacggtgcg
     1561 cgtgacgctg gaacgctctg atgatgccgt gctgctgacc gtggaggacg agggggacgg
     1621 gtttcccatc gacttcccga aaccgcaggg tacaggcctc ggcatgcgac tcgtgacgac
     1681 ttatgcgggc aagggcgcgg gcgcggtgag cgtggacagg tcggtgccgt tcagccggat
     1741 tgtggtgagg tttccggcgg ggtgag
//
LOCUS       DATGBK010000852         2553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_79635, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000852 DATGBK010000000
VERSION     DATGBK010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79635"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..871)
                     /locus_tag="VKJ77_11910"
     CDS             complement(56..871)
                     /locus_tag="VKJ77_11910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HMC46017.1"
                     /translation="MDLNPSSNSPDRPDDAFASTRFVLVEPSHPGNVGAAARALKTMG
                     FSRLVVVAPKIAFVTREPEAIAMASGADDVLASAQVVETLADALTGVHWSIALTARSR
                     EYGPPQMAPRAAAEKACEFAGQGHGGNSGAIALVFGNERVGLSNADVERCSALAHIPA
                     NPAYSSLNLAQAVQVLAYELRLALLSRADAMPAIPATSSPTISAPSASSDEIEGMYAH
                     LEQALITLDFLDPANPKKLMSRLRRLFSRSGLEHEEVNILRGIAKHILLKIKR"
     gene            1199..1999
                     /locus_tag="VKJ77_11915"
     CDS             1199..1999
                     /locus_tag="VKJ77_11915"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HMC46018.1"
                     /translation="MHPMLNIAVKAARRAGQIINRASLDLDRIQVSKKQHNDFVTEVD
                     KASEAAIIETLTTAYPKHSILAEESGVQDKDSEFQWIIDPLDGTTNFIHGFQYYCVSI
                     ALAHKGIITQAVVYDPTRNDLFTASRGSGAYLNERRIRVAKLDRLNDALVGTGFPFRD
                     GAGLDAYCKLFSQMTEACAGLRRPGAAALDLANVAAGRLDAFFEQGINAWDVAAGSLL
                     ITEAGGLVGNYTGESDFLHKSEIVAGNPKVYAQMIKILDPFTTTRQSA"
     gene            complement(2044..>2553)
                     /locus_tag="VKJ77_11920"
     CDS             complement(2044..>2553)
                     /locus_tag="VKJ77_11920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006412131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HMC46019.1"
                     /translation="ARAIRTIDTRGRERVLLTSLGDRRRFKPADIVACYERRWQIETS
                     YRELKQSMLGSELTLRSRTVEGVYQEIWGALIAYNLIRREIASAACEAKLAPTDISFV
                     RALHTIQHEMMWAALSPAYAKLPACLQRLRERLKSLPNEKRPERACDRVVKSRPKRYT
                     VRYLKKNLN"
BASE COUNT          504 a          794 c          761 g          494 t
ORIGIN      
        1 gtctggcgag ataaaaccac agctccgccg cacgtttgtc gcgcccgcga ctttcttatc
       61 gcttaatttt cagaagaata tgcttggcga taccccgcag gatattcacc tcctcgtgct
      121 ccagtcccga gcgcgaaaaa agccgccgca gccgcgacat cagtttcttc ggattagccg
      181 gatcgaggaa atcgagtgtg atcagcgcct gttccagatg cgcgtacatg ccttctatct
      241 cgtcgctgga cgcgcttggg gcagagattg tcgggctcga cgtcgcggga atggctggca
      301 ttgcgtccgc gcgactgagt aacgccagcc gcagctcgta ggccagaacc tgaaccgcct
      361 gcgccagatt cagcgagcta taagcgggat tcgccggaat gtgcgcgagc gcgctacagc
      421 gctctacatc ggcattcgat aaacccacgc gctcgttgcc gaacaccagc gctatagcgc
      481 ccgaattccc tccatgcccc tgcccggcga actcacaggc tttctctgcc gcggcgcgcg
      541 gcgccatctg cggcgggccg tattcccgcg aacgggccgt caacgcgatc gaccaatgca
      601 cgccagtcag ggcatcggcc agcgtttcga cgacttgcgc cgacgcaagc acgtcgtcgg
      661 ccccacttgc catcgcgatc gcttccggct cgcgcgtgac gaacgcgatt ttcggcgcga
      721 cgacgaccag ccgcgaaaat cccatcgtct tgagcgcgcg cgcggccgcg ccaacattac
      781 cgggatggct cggctcgacc agcacgaaac gggtcgacgc aaaagcgtcg tctgggcgat
      841 ccggggagtt tgatgagggg ttcaggtcca aggggaaacg cttgccggaa ggttgaaaga
      901 gacgtcatgg tatcgccgcg cggcccatcc ggcgaccaat ccggcgacat aagctgcgcc
      961 aagcatgacg cgccggcggc cgactcgggt aaaatagcca gttcgcgcgc gtccgctgtt
     1021 gcaaatcgct gtaatcaggc gctattgcag gttcaaagaa ggcacgcgcc ccgctcttct
     1081 tcaattcgtt gccgtcgaca cacgtcgttt ttgcccgctg gctggggcag ttttccgttc
     1141 ggggttgaga cttcacgcgc gtgcgtggag cgcagccgcc ggccaaagga ctattttcat
     1201 gcatccgatg ctcaatattg ctgtcaaggc cgctcgccgc gccggacaga tcatcaatcg
     1261 cgcgtcgctg gacctggacc gcatccaggt cagcaaaaaa cagcataacg acttcgtgac
     1321 ggaagtcgac aaggcctccg aggcagcgat catcgaaacg ctgaccaccg cctatccgaa
     1381 gcactccatc ctcgccgagg aatccggtgt gcaggacaag gattcggagt tccagtggat
     1441 catcgatccg ctcgacggca cgaccaactt catccacggt ttccagtatt actgcgtctc
     1501 catcgcgctt gcccacaagg gcatcatcac gcaagcggtg gtgtacgacc ccacccgcaa
     1561 cgacctgttc accgcgtcgc gcggcagcgg cgcttatctg aacgagcggc gcattcgcgt
     1621 agcaaaactg gatcgtctca acgacgcgct ggtcggtacg ggtttcccgt ttcgcgacgg
     1681 tgcaggcctt gacgcgtatt gcaaactgtt ctcgcagatg accgaagcct gtgccggctt
     1741 gcgccgccct ggcgccgccg cgctggacct ggcgaacgtg gccgcaggcc ggctcgatgc
     1801 gtttttcgag caaggcatca acgcatggga cgtggctgcg ggcagcttgc tgatcaccga
     1861 agcaggcggg ctggtcggca actacacggg tgaatcggat ttcctgcaca aaagcgagat
     1921 tgttgcgggc aacccgaaag tctacgcgca gatgatcaag attctcgatc cgttcaccac
     1981 cacgcgccaa agcgcatgac ggtaggaaag agttgaaaaa ggcggctgcg gccgtaatgc
     2041 cgttcagtta aggttcttct tcaagtatcg aacggtgtaa cgtttaggtc gggatttaac
     2101 gactcggtcg catgcgcgct cgggtcgttt ttcattgggc aacgacttga gccgttcgcg
     2161 cagacgctga agacaggctg gcaatttcgc gtatgccggg ctcagcgcgg cccacatcat
     2221 ttcgtgctgg atcgtatgca gagcacgcac gaagctgata tcggtcggtg cgagcttcgc
     2281 ttcgcatgcg gcgctggcga tttcacggcg aatcaggttg taggcgatca gtgcacccca
     2341 tatttcctga tacacgcctt cgacggtgcg actgcgcaag gtcaactccg aacccagcat
     2401 cgattgcttg agctcccggt agctggtttc gatctgccag cggcgctcgt agcaggcaac
     2461 gatatctgcg ggtttgaagc gccggcggtc ccctagcgaa gtcagcaaca cacgttcgcg
     2521 cccgcgcgtg tcgatggtgc ggatcgcccg cgc
//
LOCUS       DATGBK010000853         1930 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56769, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000853 DATGBK010000000
VERSION     DATGBK010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1930
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56769"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VKJ77_11925"
     CDS             complement(<1..351)
                     /locus_tag="VKJ77_11925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC46020.1"
                     /translation="MTNTVMRIALTTHSVNPRGGVVHALELASALVDEGHDVTLFAPA
                     VAGETLFREPPCRVILATIEGSQHNTVALVDARLRALKASVKACNARSFDVLHAQDSI
                     SGNALAELTAEDEIA"
     gene            complement(363..1334)
                     /locus_tag="VKJ77_11930"
     CDS             complement(363..1334)
                     /locus_tag="VKJ77_11930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sll0787 family AIR synthase-like protein"
                     /protein_id="HMC46021.1"
                     /translation="MTVTDLVAALRETRGFRHKTDIAGVMSSLARYVPRGVSGDPQAV
                     AIGDDCAAIADGDSHLLFAIEGMVSDFVRDMPWFAGYSSVMVNVSDIYAMGGRPIAVV
                     DALWSDGLGAAEDVLAGMAAASSVYGVPIVGGHSNTRSDQAQLAVAILGRANKLLSSF
                     NARPGDRLMMAVDLRGAFEDPYPFWNASVGAPAARLRADLELLPVLAESGLCDAAKDI
                     SMAGALGTALMLLECSGMGASIDLSRLPSPPGHDRLRWLSAFPSFGFVMSVREEHTAQ
                     VEQLFVERELACAVIGTVDASRKVVLHEGGESAELWNFNDDAFIVGR"
     gene            complement(1331..1891)
                     /locus_tag="VKJ77_11935"
     CDS             complement(1331..1891)
                     /locus_tag="VKJ77_11935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008345722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MSMEG_0567/Sll0786 family nitrogen starvation
                     N-acetyltransferase"
                     /protein_id="HMC46022.1"
                     /translation="MLADTEDLARLYTPASYTIKWTTLPWEANEAYKLRRAVFCIEQG
                     IFIGDDRDEIDERAQLLVAVSCIGGMPEQVVGTVRIHEDEPGVWTGSRLAVHAAFRRH
                     GKLGATLIKLAVSSAHALGCTTFLAHVQSQNAPLFHALHWTTLSEELMHGRPHHLMQA
                     DLGFYPPCMTPQSGFMTQYSPARSTS"
BASE COUNT          362 a          620 c          596 g          352 t
ORIGIN      
        1 cgctatttca tcttccgccg ttaactcggc aagcgcgttt ccgctaatgc tgtcctgtgc
       61 gtgcagcacg tcgaagctgc gcgcattgca ggctttcacg ctggccttga gcgctcgaag
      121 ccgcgcatcg acaagtgcga ccgtgttgtg ttgcgaacct tcgatggtgg cgagaatcac
      181 ccggcatggc ggctcccgga agagcgtttc tccggctacg gccggcgcga agagcgttac
      241 gtcgtggcct tcgtcaacaa gcgcgctcgc gagttcgagt gcatgcacca caccgccgcg
      301 tggattgacc gagtgcgtgg tgagggctat ccgcatcaca gtgtttgtca tgtccggctc
      361 ccttaccttc cgacgatgaa cgcgtcatcg ttgaagttcc aaagctcggc cgattcgcct
      421 ccttcgtgca gcacgacttt gcgcgaggca tccaccgtac cgatcaccgc gcatgccagc
      481 tcgcgttcaa cgaacaactg ctctacctgg gctgtgtgtt cttcgcgtac ggacatcacg
      541 aagccaaagc tggggaacgc gctcaaccag cgcaggcgat cgtgtccagg tggcgacggc
      601 aggcgcgaaa gatcgatgct agcgcccatg cctgagcatt cgagcagcat cagcgcagtg
      661 ccgagtgcgc cggccatgct gatgtccttg gcggcatcgc agagaccgct ttcggcgagc
      721 acgggcaaca actcgaggtc ggctcgcagg cgcgcggcgg gtgcgccaac cgaggcattc
      781 cagaacggat acggatcttc gaacgcaccg cgcaggtcga ccgccatcat cagacggtcg
      841 ccgggacgag cattgaaact ggacagcagt ttgttcgcgc gcccaagaat tgccactgcc
      901 agttgcgcct gatcgctgcg cgtgttgcta tggccgccga cgatcggcac gccgtacacg
      961 gacgatgccg ccgccatgcc cgcgagcacg tcttcagccg cgcccaagcc gtcgctccag
     1021 agtgcgtcga cgactgcgat cgggcggccg cccatcgcgt agatgtcgct gacgttgacc
     1081 atcacgctgc tgtagccggc gaaccagggc atgtcacgca cgaagtcgct gaccatgcct
     1141 tcaatagcga acagcaggtg ggagtcgccg tcggcaatgg ccgcgcagtc gtcgcctatg
     1201 gcgaccgctt gcgggtcgcc ggaaacgcca cgcggcacgt accgagcaag cgatgacatc
     1261 acgcccgcga tatcggtctt atgccgaaag ccgcgcgttt ccctcaacgc ggcgacgaga
     1321 tccgtcactg tcatgacgtg ctccgcgcag gcgaatactg cgtcatgaat ccgctctgag
     1381 gtgtcatgca aggtgggtaa aagccaaggt ccgcttgcat cagatgatgc ggccggccat
     1441 gcatgagttc ttcggagagc gtggtccagt gcagcgcatg aaacaacggg gcgttctggc
     1501 tctgcacatg cgcgaggaag gtcgtgcagc caagcgcgtg cgcactgctc acggcaagct
     1561 tgatcagcgt cgcgccaagc ttgccgtgcc gccggaacgc ggcatgcacg gcgagccgcg
     1621 agccggtcca cacgccgggt tcatcttcgt gaatgcgcac tgtaccgact acctgctcag
     1681 gcatcccgcc gatacaactc accgccacga gcagttgcgc gcgctcgtcg atttcatcgc
     1741 ggtcatcgcc gataaaaatc ccctgctcga tgcagaacac cgcccgccgc agcttgtagg
     1801 cttcgttcgc ttcccagggc agcgtggtcc acttgatcgt gtagctggcg ggggtgtaga
     1861 gccgcgcgag atcttcggta tcggcgagca tggtcagacc tcgtaggatg acaacgacga
     1921 acacgcgccg
//
LOCUS       DATGBK010000854         1902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_195769, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000854 DATGBK010000000
VERSION     DATGBK010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195769"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1668
                     /gene="tssF"
                     /locus_tag="VKJ77_11940"
     CDS             <1..1668
                     /gene="tssF"
                     /locus_tag="VKJ77_11940"
                     /inference="COORDINATES: protein motif:HMM:TIGR03359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HMC46023.1"
                     /translation="FPLFTQRLLDVVYPNYLAPLPSMAIVAMQPNLHEGSLLAGYTLP
                     TGTPMRAGLGPGEQTPCEFRTAHEVTLWPLTLSEIRMGGRPTDLPLARMNDGAQVRGA
                     LHLRLDTTRLAKVGELPIERLGFFLSGPETQAFRLLERILGDTVGVVCHPASASGGES
                     TLLAPDAIRHEGFDATQALLPHTSHAFQGYRLLHEYFAFPARYLFFSIGDLRPALRRI
                     AGDAFVLTLLFKTSDPELERSVDLRSLALHCTPAINLFPKRTDRIAVSTRQHEHHLVV
                     DRTRPLDYEVHSVAEVTGHEQQRGKSLAFRALYGALGVTAEDHGRYFSTRREPRVVPA
                     QGRRPPRSGYVGSELFVSLVDQHDAPFPEALRHIGAATLCTNRDLPLSMPLDSASDFT
                     LRMSAPVTAIKAIRGPTSPRAAIAENDTTWRLIGHLGLNYLTLADLDAASGAKALREL
                     LELYAGAAVPGALAQIEGIRGVTVEAVTRQLPQPGPLMFGRGVAVSLLIDELAFAGAS
                     PWLFGAVMEQFFARHVSLNSFSELVLVTLQRGEIRRWPARIGRRPTA"
     gene            1665..>1902
                     /locus_tag="VKJ77_11945"
     CDS             1665..>1902
                     /locus_tag="VKJ77_11945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013586921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HMC46024.1"
                     /translation="MNARIAAFWQRVADAPHAHGLYALLRWLDARGDSPVRLGHASHP
                     GDEPLRIGQLPSLAFAPSTVASVTLPDGAAVVAEI"
BASE COUNT          301 a          658 c          592 g          351 t
ORIGIN      
        1 ttcccactct tcacgcagcg cttgcttgat gtcgtttatc ccaactatct ggcgccgttg
       61 ccgtcaatgg cgatcgtcgc gatgcagccc aacctgcatg aaggcagcct gctggccggc
      121 tacacgctgc caaccggcac gccgatgcgc gcgggactcg gtcccggtga gcagacgcct
      181 tgcgagttcc gcaccgcgca cgaggtgacg ttgtggccgc tgacgctctc tgagatcagg
      241 atgggcggcc gccccaccga cctgccgctc gcccggatga atgacggcgc ccaggtgcgc
      301 ggtgcattgc atctgcgtct ggacacaacg cgccttgcga aagtcggcga actgccaatc
      361 gaacgtttag gcttctttct aagcggtccc gagacgcagg cgttccggct gcttgaacgc
      421 attctcggcg atacagtcgg cgtggtatgt catccagcat cggcgtcggg cggcgaaagt
      481 acgctgctcg cgcccgacgc gattcgccac gagggcttcg atgccacgca ggcgctgctg
      541 ccgcatacgt cgcacgcgtt tcagggttat cgcctgctgc acgagtactt cgcgtttccc
      601 gcacgctacc tgttcttcag catcggtgat ttacgcccgg cgctgcggcg catcgctggc
      661 gacgcgttcg tcctgacatt actcttcaag acgagcgacc cggaactcga acgctcggtc
      721 gatctgcgca gtctcgctct ccattgcacg cccgcgatca acctgttccc gaagcgcacc
      781 gaccgcatcg ccgtatcgac gcggcagcac gagcatcatc tcgtggtcga ccggacccgt
      841 ccgctcgact atgaggttca cagcgtcgcg gaagttaccg ggcatgagca gcaacgcggc
      901 aaatcgctcg cgttccgggc gctttacggc gcacttggcg tgactgcgga ggaccacggc
      961 cgctattttt cgacccgtcg cgagccgcgg gtggttcccg cgcaaggtcg gcgcccaccg
     1021 cgttcgggct acgtgggcag cgaattgttc gtgtcgctgg tcgatcagca cgacgcaccg
     1081 tttcctgaag cattgcgcca catcggcgcc gcaacgctgt gcaccaaccg tgatctgccg
     1141 ctgtccatgc cactcgatag cgcaagcgac ttcacccttc gcatgtcggc gccggtcacc
     1201 gcgatcaagg cgatacgcgg gccgacttcg ccacgcgcgg ctatcgcaga gaacgacacg
     1261 acatggcggc tcatcggtca tctcgggctc aactacctga cgctcgccga cctcgacgcc
     1321 gcgagcggcg cgaaagcgct acgggaattg ctggaactgt atgccggcgc cgccgtgccc
     1381 ggcgcgctag cgcagatcga gggcattcgc ggcgtcacgg tggaagccgt tacgcggcaa
     1441 ctgccgcagc ccgggccgct gatgtttggc cggggcgtcg ctgtgtcgct gttgatcgac
     1501 gaactcgcgt tcgcgggcgc gagcccgtgg ctgttcggcg cagtgatgga gcagttcttc
     1561 gcgcgccacg tgtcactcaa cagcttcagc gaactcgtgc tcgtcaccct gcaacgcggc
     1621 gagatacggc ggtggcccgc gcgtatcggc cggcgtccca ccgcatgaac gcgcgcatcg
     1681 ccgctttctg gcaacgcgtc gccgacgcgc cacacgccca tggtctgtac gccctgctgc
     1741 gctggctaga cgcgcgtggc gacagtcccg tgcgtctcgg ccacgcatcg catccgggtg
     1801 acgaaccgct gcgcatcggc caactgccat ctcttgcctt cgcgccttca acggtcgcca
     1861 gcgtgacgct gccggatggc gcggcagtcg ttgccgaaat cg
//
LOCUS       DATGBK010000855         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_10056, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000855 DATGBK010000000
VERSION     DATGBK010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10056"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VKJ77_11950"
     CDS             <1..438
                     /locus_tag="VKJ77_11950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003805239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005488 - binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RHO alpha subunit C-terminal catalytic
                     domain-containing protein"
                     /protein_id="HMC46025.1"
                     /translation="KFSGRCDRKQHYEVRFPSHAIIKAVFTPAGTGTDEGPLHEHVFL
                     MNSYNFMTPIDESTTRYFWFQMRNFDQRDENVSRQFNEDVRHAFEEDRVILTAVQAGM
                     ANRRTPNLDLPLDAGPLRFRRSLQRLIEAETAAQEPAALDCVR"
     gene            441..>1520
                     /locus_tag="VKJ77_11955"
     CDS             441..>1520
                     /locus_tag="VKJ77_11955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HMC46026.1"
                     /translation="MQEATEPRAFKRMRVAEVQRESSVIKSFVLEAADGALLPAFLPG
                     QFIQVRLTGPDGQRLLRHYSLSGDPAERTRWRISVKHQLAPPDRGRLPDGLVSSHLHG
                     VIEAGATLDVAGPAGAFVLDELSDRPVVLLSGGVGVTPMLSMLHRLCATSRRRVYFIH
                     ACENGAVHAFRDEVVRLQVSREGVLTHICYRMPEPSDIAGHSFDSRGLITRETLQRLL
                     PLDDYDVYLCGPTRFMQTNWRLLRSLGVDQARIQHEFFGPASVLELEEVEVQSSPEPV
                     VTPEASVPTVCFMPSGKTAAWHSSCHSLLDFAEAAGLNPSFSCRAGLCGSCASQLIDG
                     TVEYFEQPLDEPQDGEVLLCCARPST"
BASE COUNT          280 a          446 c          477 g          317 t
ORIGIN      
        1 aaattctcgg gacgctgcga tcgcaagcag cattacgaag tgcggtttcc atcgcatgcg
       61 atcatcaagg cggtgttcac gccggcaggc acgggtaccg acgaaggtcc gctgcacgag
      121 cacgtcttcc tgatgaactc atacaacttc atgacgccga tcgatgaatc gaccacgcgc
      181 tatttctggt tccagatgcg caacttcgat caacgcgatg aaaacgtgtc gcgtcagttc
      241 aacgaggacg tccgccatgc attcgaggag gaccgcgtga ttctgaccgc agttcaagca
      301 ggcatggcga acaggcgaac gcctaatctc gacctgccgc tcgacgcagg gccgttgcgc
      361 tttcgacgca gcctgcaacg gctgatcgag gcggagaccg cggctcagga acccgccgcg
      421 ctcgactgcg tgcgctagcc atgcaagagg cgacagaacc gcgagcgttc aagcggatgc
      481 gcgtagctga ggtgcagcgg gaaagtagcg ttatcaaatc gttcgtgctt gaagcggcgg
      541 acggtgcgtt gctgccggct ttcctgccgg gtcaatttat ccaggtgcgt ctcaccgggc
      601 cggacgggca gcgcttgctg cggcattaca gcctgtctgg cgatcctgcc gaacgcacgc
      661 gctggcgtat ttcggtcaag catcaattgg cgccgccgga tcggggccga ctacctgacg
      721 ggctggtatc gagccatctg cacggggtga tcgaggcggg cgctacgctt gatgttgccg
      781 gtccagccgg tgcgttcgtt ctcgatgagc ttagcgatcg tcccgtcgta ttgttaagcg
      841 gtggtgttgg cgtgacgccg atgctgagca tgttgcatcg tttgtgtgcg acgtcccggc
      901 gtcgcgtcta tttcatccac gcatgcgaaa acggcgccgt gcatgcgttc cgggacgaag
      961 tggtgcgctt gcaggtgagc agggagggtg tcctgacgca tatctgttat cgcatgcctg
     1021 agccatcgga cattgccggg catagcttcg acagccgtgg cctgatcacg cgcgagaccc
     1081 tgcaacgcct gctgccgctc gacgactacg acgtctatct atgcggccca acgcgcttca
     1141 tgcagacgaa ctggcgtttg ctacggagcc tcggtgtcga tcaagcccgt atccagcatg
     1201 agttcttcgg acccgcctcg gtgcttgagc tggaagaggt cgaggtgcag tcttcgcccg
     1261 agcccgtggt cacaccggaa gcatccgtgc ccacggtttg ttttatgccc tccggcaaga
     1321 ccgctgcatg gcactcgtca tgtcattcat tgctggactt tgccgaagct gcgggcctta
     1381 acccgtcgtt cagttgccgc gcaggattgt gcgggagctg tgccagccag ttgatcgacg
     1441 gcacggtcga atacttcgag caaccgctcg atgagcctca agatggagaa gtgctgctgt
     1501 gctgcgcaag gccgtcaact
//
LOCUS       DATGBK010000856         1559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_195825, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000856 DATGBK010000000
VERSION     DATGBK010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195825"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1527
                     /locus_tag="VKJ77_11960"
     CDS             <1..1527
                     /locus_tag="VKJ77_11960"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007737187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II"
                     /protein_id="HMC46027.1"
                     /translation="IEALRSATWSFPSFSLEYVAQSVLGEGKAIDNPYQRMDEIQRRF
                     DEDKPALARYNLKDCELVTRVFAKTELLPFLLERATVTGLPADRSGGSVAAFTHLYMP
                     RMHRQGFVAPNLGDVAGAASPGGFVMNSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVG
                     LVDGLRHPDDEHSVPGFLGARFSRTRHSLPAIVDQVWKGREEAKREHNKPLSQALKII
                     MNAFYGVLGSTGCRFFDPRLASSITMRGHEIMRKTRELIEAEGYEVIYGDTDSTFVWL
                     KHARSEEEAARIGGLLVEHVNAWWRDHVRERFGLESALELQFERHYRRFFMPTIRGAE
                     EGSKKRYAGLSLLPDGSEEVVYKGLETVRSDWTPLAQQFQRELYLRIFKGEPYQDYVR
                     DYVRRTLSGEFDELLVYRKRLRRPLDAYERNVPPHVRAARSADEFNRERGRPLQYQRG
                     GWISYVMTSTGPEPLETLQSAIDYDHYLTRQLQPIADAILPLLQSDFQTLVSGQHELF
                     "
BASE COUNT          318 a          425 c          474 g          342 t
ORIGIN      
        1 attgaagcgc ttcggtcggc aacatggagc ttcccttcgt tcagcctcga gtatgtcgcg
       61 cagagcgtgc tcggcgaagg caaggccatc gataatccgt accagcgaat ggacgaaatc
      121 cagcgtcgct tcgatgaaga caagcccgct ctcgcacgct acaacctgaa ggattgcgag
      181 ctggtcacgc gggtctttgc gaagacggaa ctgctgccct tcctgctcga gcgcgcaacg
      241 gtcacgggtc tgcctgctga tcgtagcggt ggatcggtgg ccgcttttac gcacttgtat
      301 atgccgcgga tgcataggca aggtttcgtc gcgcccaatc tgggcgatgt cgccggtgcg
      361 gcaagtcctg gcggattcgt gatgaattcg cggccgggtc tttacgattc cgttctggtt
      421 ctcgactata aaagcctgta cccatcgatc attcgcacct tccttatcga tcccgttgga
      481 ttggtcgatg gtctgcggca tcccgatgac gagcactcgg tgccgggttt tctcggcgca
      541 cgtttctcac gcacgcggca tagtctgccg gccattgtcg atcaggtgtg gaaaggacgc
      601 gaggaagcga aacgcgagca taacaagccg ctctcgcaag cgttgaagat catcatgaac
      661 gcgttttatg gcgtgctggg ttcaacggga tgccgcttct tcgaccctcg cctggcgtcg
      721 tcgatcacca tgcgcggtca tgaaatcatg cgcaagacgc gtgagttgat tgaagccgaa
      781 ggatacgaag tgatctacgg tgacacggat tccacgttcg tctggttgaa gcacgctcgc
      841 agcgaggaag aagcggcgcg tattggcggg ctgcttgtcg agcacgtgaa tgcgtggtgg
      901 cgggatcatg tgcgagagcg cttcgggctg gagagcgccc ttgagttgca attcgaacga
      961 cactatcggc gttttttcat gcctacgatt cgtggcgcgg aagaaggcag caaaaagcgt
     1021 tatgccggtc ttagccttct gcctgacggt agcgaagaag tggtctataa gggacttgaa
     1081 accgttcgca gcgattggac gccactcgcg cagcagtttc agcgagaact ctatttgcga
     1141 atcttcaagg gcgagccata tcaagactat gtacgcgact atgtgcggcg tacgctgagc
     1201 ggcgagttcg acgagttgct cgtgtataga aagcgcctgc gccggccgct ggatgcttat
     1261 gagcgcaacg tgccgccgca tgtccgcgcg gcgcgctcgg ccgatgagtt caaccgcgag
     1321 cgcggccggc cgttgcagta tcaacgcggc ggctggatca gctatgtgat gaccagcacg
     1381 ggaccggaac cgcttgaaac cttgcagtca gccattgact acgatcacta cctgacacgc
     1441 cagttgcagc ctatcgccga cgctatattg ccgcttctgc aaagcgactt ccagacgctg
     1501 gtttctgggc agcacgagtt gttttagccc acgaagatat ccacagaaat tgttggcaa
//
LOCUS       DATGBK010000857         2854 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_288226, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000857 DATGBK010000000
VERSION     DATGBK010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288226"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..515)
                     /locus_tag="VKJ77_11965"
     CDS             complement(<1..515)
                     /locus_tag="VKJ77_11965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HMC46028.1"
                     /translation="MLPLLGLATIVVLLAAILSKRMSPLVALIIVPIAASLIGGFGLQ
                     TSKFVIDGLKSLAPVVGMFVFAILYFGTITDAGTLDPIIDRILRTVGTRPTRIVMGTT
                     LLALLIHLDGSGAVCFLVTIPAMLPLYDRLKMDRRVLAAAASMAAGINFLPWTGPMIR
                     ASASLHLPISA"
     gene            639..1538
                     /locus_tag="VKJ77_11970"
     CDS             639..1538
                     /locus_tag="VKJ77_11970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014897338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46029.1"
                     /translation="MDLNLRDIRAFIAVAQAGNFTRAALRLHLSQPALTVQIRRLEET
                     LGARLFDRNSRSVALTPVGRDLLPVLQKSLGDMEQVLQDARALSDGSTGTVRLACLPS
                     FAASLLPDLIQDFRRGLPHVSFQIRDVVASVVNTLVRNEDVDVGLTGGDVTDASLEVL
                     HAGEDRLCVVCPDGHPLTTGKRIGLEEIVRYPLVLTAAGTSVRAVVDAAFEHAGCAPV
                     PTCEPTYMMTAVAMVRAGLGVTILPRSAREVRAEPALVTRVIDEPGFVRPIALVKKRG
                     RTLPPVTEAFVGVIVKGLGQRQE"
     gene            complement(1555..>2854)
                     /locus_tag="VKJ77_11975"
     CDS             complement(1555..>2854)
                     /locus_tag="VKJ77_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018444231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-hydroxycarboxylate transporter family protein"
                     /protein_id="HMC46030.1"
                     /translation="VWRDRWWVIFDVRIGVLPLPVYIVLLLVLAAMAASGKLDADLPT
                     GIALVAVGGFTCAELARRIPLIRHIGATSIFAAFLPSALIYYHLMPASVVKSVTSFTK
                     STNFLYLFIAAIIVGSVLSMDRQTLIKGFIKIFVPVCAGSLAAAVVGTGVGAMLGLGA
                     KHTLFFVVVPIMAGGVGEGALPLSMGYAQTLGVDQGPLFAQVLSAVMLGNIAAICCAG
                     FLNYVGTKKPAWTGNGQLTRSDERSPKETSPVAPVAFEFDVSSVAAAGATAIALYLVG
                     QLSHQWFGWPAPVVMLLLVVAAQLLQAVSPRVRGGARFMYSFFSTAVTYPLMFAISVA
                     MTPWGEIVTAFHWANILTAVVTVLTLVVTGFFVGRLVGMHPVEAAMVNATHSGLGGTG
                     DVAILTAGNRMELMPFAQIATRIGGAITVMAALAVFAYMR"
BASE COUNT          587 a          896 c          891 g          480 t
ORIGIN      
        1 aacgccgata taggcagatg cagcgacgcc gacgcgcgga tcattggccc ggtccagggc
       61 aggaaattga tccccgccgc catcgatgcc gccgcggcca gcacccgccg atccatcttg
      121 agacggtcgt aaagcggcag catcgcggga atggtgacga ggaaacaaac tgcgcccgaa
      181 ccatcgaggt gaatcagcag cgcgagcagc gtcgtgccca tcacaatgcg cgtcggccgc
      241 gtgccgaccg tgcgcaagat tcggtcgatg atcggatcga gcgtgccggc gtccgtgatg
      301 gtgccgaagt acaggatcgc gaaaacgaac atgccgacga cgggcgcaag gctcttcagc
      361 ccgtcgatga caaacttgct cgtctgcaag ccgaagccgc cgatcagcga tgccgctatc
      421 ggcacgatga tcagcgccac cagcggcgac atccgttttg aaagaatcgc cgcgagcagg
      481 acgacgatag tggccaagcc aagtaagggc agcaagattt gtctccgatc ttttttaatc
      541 gattgtttta tgagtcaacc aagcgtagtt tcgggacgtc gataaaacaa ttgaaatgat
      601 ttgatagcag caatcaaatt tcataatagt tccggatcat ggatctgaat ctccgcgata
      661 tccgtgcctt cattgccgtg gcgcaggcgg gcaatttcac gcgcgcggcg ctgcggctgc
      721 atctgtcgca gcccgcgttg accgtgcaga tccggcgcct cgaggaaacg ctcggcgcac
      781 ggctgttcga ccgcaatagc cgcagcgttg cgttgacgcc ggtcggtcgg gatttgctgc
      841 ccgtcctgca aaaatcgctc ggcgacatgg agcaagttct ccaggacgcc cgcgcgctca
      901 gcgacggttc caccggcacg gtacggctcg cgtgcctgcc gtcgttcgcc gcgagtttgc
      961 tgcccgatct gatccaggat ttcagacgcg ggttgccgca cgtgtcgttt caaatccgcg
     1021 atgtcgtcgc gagcgtcgtc aatacgttgg tgcgtaacga ggatgtggac gtgggcctga
     1081 ctggcggcga cgtcaccgat gcctcgctgg aagtgctgca cgcgggtgag gaccggctgt
     1141 gcgtcgtgtg cccggacggg catccgttga ccactgggaa gcggatcggc ctggaggaga
     1201 tcgtccgcta tccgctggtg ttgacggcgg cgggaacgag cgtgcgggca gtggtggatg
     1261 ccgcgttcga gcatgccggc tgcgcacccg tgcccacctg cgagccgacc tacatgatga
     1321 cggcggtggc catggttcgg gcagggctcg gcgtgaccat cctgccccgc tcggcccgtg
     1381 aggtgcgcgc agaaccggcg ctggtaacgc gggttatcga tgaaccgggt ttcgtgcgtc
     1441 ccatcgcgct cgtgaagaag cgcggacgca cactgccgcc cgtgacggag gcatttgtcg
     1501 gcgtgatcgt caaggggctt gggcagcgcc aagagtaaag gcgctgctgt cgattcaacg
     1561 catgtaagcg aacaccgcca gcgcggccat caccgtgatc gcgccgccaa tgcgcgtcgc
     1621 gatctgcgcg aacggcatca gctccatgcg gttgcccgcc gtcaggatgg cgacgtcgcc
     1681 cgtgccgccc aaaccgctgt gcgttgcatt gaccatggct gcttccactg gatgcatgcc
     1741 caccagccgg ccgacgaaga agccagtcac caccagcgtc agcacggtca ccacggccgt
     1801 caggatattc gcccaatgaa atgccgtaac gatctcgccc cagggcgtca tggcgacgct
     1861 gatggcgaac atcagcgggt aggtgacggc ggtggaaaag aacgagtaca tgaaacgcgc
     1921 accaccgcgc acgcggggcg ataccgcctg cagcaattgc gccgcgacca ccagcagcag
     1981 catcaccacg ggcgcgggcc agccgaacca ttgatgactc aactgcccca ccagatacaa
     2041 tgcgatggcg gtagcgcccg ctgcggcaac ggagctgaca tcgaattcaa aggcgacagg
     2101 cgcaaccggc gatgtctcct tcggcgagcg ttcgtcgctg cgtgtcagtt ggccgttgcc
     2161 cgtccatgcc ggcttcttcg tgccaacgta gttcagaaaa cccgcgcagc aaattgcagc
     2221 gatgttgccg agcatgaccg ccgataatac ctgcgcgaac agcgggcctt gatcgacacc
     2281 aagcgtctgc gcgtacccca tcgacagcgg caatgcgccc tcacccacgc cgcccgccat
     2341 gatcggcacg accacgaaaa acagtgtgtg tttcgcgccg agcccaagca ttgcgcccac
     2401 gcccgtcccg accaccgccg ctgccagaga acccgcgcac accggcacga agatcttgat
     2461 gaagcctttg atcagcgtct gccggtccat gctgagaacg ctgcccacga taatcgcagc
     2521 gatgaagagg tagagaaaat tggtgctctt cgtgaacgac gtcaccgact tcacgacgct
     2581 tgccggcatc aggtggtaat agatcagcgc cgacggcagg aaggccgcga agatcgaggt
     2641 cgcgccaatg tggcggatca acggaatgcg ccgcgcgagt tcggcgcagg taaaaccgcc
     2701 gacagcgacc agcgcgatgc ctgtcggcag gtcggcgtcg agtttgccgc ttgcggccat
     2761 ggctgcgagc accagcagca acacgatgta cacgggcaag ggcaacacgc cgatacggac
     2821 atcgaatatc acccaccagc gatctctcca tacc
//
LOCUS       DATGBK010000858         3685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_10109, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000858 DATGBK010000000
VERSION     DATGBK010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10109"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..969)
                     /locus_tag="VKJ77_11980"
     CDS             complement(<1..969)
                     /locus_tag="VKJ77_11980"
                     /EC_number="1.3.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012218382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018506 - maleylacetate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetate reductase"
                     /protein_id="HMC46031.1"
                     /translation="MDPFIYQGLPSRVVFGAGSIEHLEREIDLLAAKRAIVLSTPQQC
                     EQAEAFAARLGSRAVGVFSKAVMHVPVETAQEARDYAAKLGADCAVAIGGGSTTGLGK
                     AIALTSSLPIIAVPTTYAGSEMTPIYGLTESGLKKTGRDLRVLPKTVIYDPELTLSLP
                     AALSVTSGINAIAHAAEGLYAQDANPITGLMAEEGIRALGAGIGRVVSRLDDLDARAD
                     CLYGAWLCGAVLGSVGMALHHKLCHTLGGTFNLPHAETHTIVLPHALAYNREAAPLAM
                     QRIARALGVSDAAQGVFDLARDNGAPTALKDIGLKESDIGIALDIAL"
     gene            complement(972..2435)
                     /locus_tag="VKJ77_11985"
     CDS             complement(972..2435)
                     /locus_tag="VKJ77_11985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC46032.1"
                     /translation="MQTQLFINGRFVPAESGETLASLNPHDNSVIAQVSMAGPADIDR
                     AVAAAKAAFPKWSNMAAMDRGRLLLKLADAIEANADELARLESLDTGHPIRDTRNLDV
                     PRTAVTFRYFGGMADKFEGTVVPVEAGFLNYVTREPVGVVGQVVPWNFPLMFTSWKMA
                     PALAAGNCVIMKPAELTPLSSLAIAELMAEVGFPPGVVNVVPGLGQVAGQYIAEHPEI
                     SKVAFTGSTAVGRKVVQASAGNLKKVQLELGGKGANVVFADANLDAVVQGSAFGIFHN
                     QGQACIAASRLIVHESVADELLERFIALARSIRIGDPLDPATEMGPLTSRHHRDRVLS
                     YVDVAREQGGRILSGGKAPDSAALADGCYVEPTIVAAKPTDRVSQEEVFGPFVTVSTF
                     GSDEEALAIANGTEYGLGAGMWTRDLQRAHLFARQLKSGMVWINCYKRVSPASPFGGV
                     GSSGYGREMGFEVMREYTQPKSVWVNVDANIPPYYPR"
     gene            complement(2536..3549)
                     /locus_tag="VKJ77_11990"
     CDS             complement(2536..3549)
                     /locus_tag="VKJ77_11990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyquinol 1,2-dioxygenase"
                     /protein_id="HMC46033.1"
                     /translation="MFEEQAMDQSAGFQSVTATDPDKTSGYRTFTLGDFEFSRDAYFV
                     TVKWPSKGETRSHQMHADDFLRAMMRDVAWGFFYGWVNFDEVIGTRNHYGRVDMYAGS
                     YNSSFKDAGVDYTQQFETPLIMATFKAILRDWVNEGFDPFAAPEETGSAFGIKHGDNI
                     GAIERTRIATKRMPGLVGDSPLRDDLPVNRQFADIGQDEPEIHAEAGFEHELHAFSLF
                     KYLSRSDVTWNPSVTSVCKQSLFCPTTEEFVLPVFHGNDRVEWFLQLSDQIIWDVGDK
                     DTGEPRARITMNAGDIAAMPADIRHKGYSQKRSMLLVWENATPDLPKRYESGELPPYP
                     VPL"
BASE COUNT          751 a         1168 c         1075 g          691 t
ORIGIN      
        1 caacgcgata tccagcgcaa tgccaatatc ggattccttc aagccgatat ccttcaacgc
       61 cgtcggtgcg ccgttgtcac gggcgagatc gaatacgcct tgcgcggcat ccgagacccc
      121 aagcgcacgc gcgatccgct gcatcgcgag cggcgctgct tcgcggttgt acgcaagcgc
      181 atgcggcaac acgatggtgt gcgtctcggc gtgcggcaag ttgaaggtac cgccaagcgt
      241 gtggcacagc ttgtgatgca acgccatgcc aacgctgccg agcacggcac cacacagcca
      301 tgcgccgtag aggcaatcgg cgcgggcatc gagatcgtca agacgggaaa cgacgcggcc
      361 tatgcccgct cccagcgcac gaatgccctc ctccgccatc aatccggtaa tcggattcgc
      421 atcttgtgcg tagagccctt ccgccgcgtg tgcgattgca ttgatgccgc ttgtgacgga
      481 aagcgcagcg ggcagcgata acgtcaactc ggggtcgtag atcaccgtct tcggcaacac
      541 acgcaggtcg cggccggtct tcttcaaccc ggattcggtg agcccgtaga taggcgtcat
      601 ttccgaacct gcgtacgtgg tcggaacggc aatgatcggc agcgatgacg tcagtgcgat
      661 tgccttgccg agcccggtcg tggaaccacc gcctatcgcc acggcacagt cggctcccag
      721 cttcgcggcg taatcgcggg cctcctgcgc ggtctcgaca ggcacatgca tgacagcctt
      781 cgaaaacacg ccaaccgccc gcgagccgag tcgcgcggcg aacgcctcag cctgttcgca
      841 ctgctgcggt gtggacagga cgatggcccg tttagccgcc agcaaatcga tctcgcgctc
      901 gaggtgttcg atgctgcccg caccgaacac cacacgcgaa ggcaagccct gatagatgaa
      961 cgggtccatg atcagcgcgg gtaataaggc gggatgttgg cgtcgacgtt cacccagacc
     1021 gacttcggct gcgtgtattc gcgcatgact tcaaagccca tctcacggcc ataaccgctc
     1081 gatcccaccc cgccaaacgg tgatgccgga ctcacgcgct tatagcaatt gatccagacc
     1141 atgccgcttt tcaactgacg cgcaaagaga tgtgcgcgtt gcaggtcgcg tgtccacatg
     1201 ccggcgccca gtccgtattc ggtgccgtta gcaatggcca gggcctcttc gtcgctcccg
     1261 aatgtgctca ccgtgacgaa tggtccaaat acctcttcct gcgacacgcg atcagtcggc
     1321 ttcgcggcaa caatagtcgg ttcgacgtaa caaccgtcgg caagcgcggc gctatccggc
     1381 gccttgccgc ccgacagaat ccggccgccc tgctcgcgtg cgacatcgac ataagacagc
     1441 acgcggtcgc gatgatgacg cgacgtcaac ggccccatct cggtcgccgg atcaagcgga
     1501 tcgccgatcc ggatcgagcg cgccagcgcg ataaaacgct caagcagttc atccgcgacc
     1561 gactcatgca cgatcagccg cgatgcggca atgcatgcct gcccctggtt atgaaagata
     1621 ccgaatgcgg agccttgcac gacagcatca agattggcgt cggcgaatac gacgttcgca
     1681 cccttgccgc ccagttcgag ttgcaccttc ttgagattgc cggccgaggc ctgcacgacc
     1741 ttgcgcccaa ctgcggtcga gccggtgaac gccaccttgc tgatctccgg atgctcggcg
     1801 atatattgcc ccgccacttg cccgagaccg ggcacgacgt tcaccacgcc cggcgggaag
     1861 cccacctcgg ccatcagttc ggcaatcgcg agactggaca gcggcgtgag ttccgccggc
     1921 ttcatgatca cgcaattgcc ggcggcaagc gcgggcgcca tcttccagct ggtgaacatc
     1981 agcggaaaat tccaaggcac cacctgcccg accacgccga ccggttcgcg cgtcacatag
     2041 ttcaggaagc ccgcttcaac cggaaccacc gtcccttcga atttgtccgc catgccgccg
     2101 aaataacgga acgtgacggc cgtgcgcggc acgtcgagat tgcgggtatc gcgaatcgga
     2161 tgccccgtgt ccagcgattc gagccgggcc agttcatcgg cattcgcttc aatggcgtcg
     2221 gccagcttaa gcagcaggcg gccgcgatcc atggccgcca tgttgctcca cttcggaaac
     2281 gcagctttcg ccgcggcgac ggcgcggtcg atatccgcag ggccggccat cgacacctga
     2341 gcaatcacgg agttgtcgtg cgggttgagt gaagccagcg tttcaccgct ctcggcggga
     2401 acgaagcggc cattgatgaa cagttgcgtt tgcatggtgg tcctgcctga tgaacaaatg
     2461 aaagctgaag acgaaaccct gcccgcgacg ccggcgagac cggcgtcgtc agggagctac
     2521 agaagcaaaa ggggtttaga gcggtaccgg atacggcggg agttcaccgc tctcgtaacg
     2581 cttgggcaga tcgggggttg cgttctccca cacgagcagc atcgaacgct tttgcgaata
     2641 acccttgtgg cgaatgtcgg caggcatggc cgcaatgtcg ccggcgttca tcgtgatgcg
     2701 cgcacggggt tcgcccgtgt ccttgtcgcc gacatcccag atgatctgat cggacagttg
     2761 caggaaccac tccacgcgat cgttgccgtg aaagaccggc agcacgaatt cctcggtggt
     2821 cgggcaaaag agactctgct tgcagacgga ggtgaccgat ggattccagg taacgtccga
     2881 acgcgagagg tatttgaaaa gactgaacgc atgcagctca tgttcgaaac cagcctctgc
     2941 gtggatctcc ggctcgtcct ggccgatatc cgcgaactgc cggttgaccg ggaggtcatc
     3001 gcgcaacggc gaatcaccca cgagtcccgg catgcgtttc gtcgcaatgc gcgtgcgctc
     3061 gatcgcgcca atgttgtcgc catgcttgat accgaatgcc gaaccggttt cctcgggagc
     3121 ggcgaacgga tcaaaccctt cgttgaccca gtccctcagg atcgccttga aggtcgccat
     3181 gatcagcggc gtttcgaact gctgcgtgta gtcgacgccc gcgtccttga agctcgagtt
     3241 gtacgaaccg gcatacatgt ccacgcggcc gtagtgattg cgcgtgccga tcacttcgtc
     3301 gaagttgacc cagccgtaga aaaatcccca cgccacgtca cgcatcatcg cgcgcagaaa
     3361 gtcgtcggca tgcatctggt gcgaacgggt ttcccccttc gacggccatt tgaccgtgac
     3421 gaaataagcg tcacggctga attcgaaatc acctagcgtg aaggtacggt aaccgctcgt
     3481 cttgtccggg tcggtcgcgg tgacactttg aaaacctgct gactggtcca tggcttgttc
     3541 ctcgaaaatt gatcaggtcg atgtcgataa ggcggctcac ggcctcattg aatgcttcat
     3601 cgaatgcttc attgaatgcc tcattgaatg catatctcgg cccacttctc taccgaacac
     3661 gaaccaagaa tggtctgcac gagca
//
LOCUS       DATGBK010000859         3083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334231, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000859 DATGBK010000000
VERSION     DATGBK010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3083
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334231"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..541)
                     /locus_tag="VKJ77_11995"
     CDS             complement(<1..541)
                     /locus_tag="VKJ77_11995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020379631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46034.1"
                     /translation="MRELILRPFAHTIPIKGWTRYALVFAFAAAIAFFAVFAPAFATL
                     SNIDSVLLNTVAPLAIVALAMTVVASLGAVDLSVGTAVDLASLVFVTLVARHVGLPIA
                     IVAALGAALAVGLFNGVLIASFGVEPFLATLGTLFIGQSIQQLATDGGQPIYLLNQVL
                     PQAFSTLGHGRLFGVALPLY"
     gene            complement(534..1562)
                     /locus_tag="VKJ77_12000"
     CDS             complement(534..1562)
                     /locus_tag="VKJ77_12000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46035.1"
                     /translation="MSQVQTKQSRGNVLALARSFKLPQWWLQSGALLAIFAVLAVFAT
                     SSPLFFTVGNLANVMQQTAVIGTLAFGLTLVLIGGGANGIAGGIDLSIAANLGFCAAV
                     YATSLANGLASPTAIALTLSAGTAVGVFNAFAVVVLRMLPLLATLTSMNIVAGLELVV
                     TKNSTVSATGPTLAALLDNGPFAIPWLSYAFVGVGLMFVWLGHFTRFGLRLHASGSHP
                     AAVRAAGLRAEGYVAASYVVCGLSAGIAALASTALLSGSAPGAGENLLAVIAAALLGV
                     VFSRRLVPTVAGTWLSVLFLGLVANGFQLDNVSSYWISGVEGALILFVVSLTALLRRR
                     NLEKSSHA"
     gene            complement(1559..3082)
                     /locus_tag="VKJ77_12005"
     CDS             complement(1559..3082)
                     /locus_tag="VKJ77_12005"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC46036.1"
                     /translation="MRAISKQFDGIPALRHVSLDLAPGQVHGLIGQNGAGKSTLIKVL
                     GGIHRSDEGEVVLDGIAASINSPSDARRLGIEIVHQDRLLAPTLTVAEALLLGNETTF
                     GFLPVLNAASMRRFARTAVQEHFGIDIEPTRLIAELSVAEQQLVQITRALLSAPRVLV
                     FDEPTAALARHEAEQLFTAIRRLRERGLAILYVSHYLDEIEALCDVVTVLRDGRDVAR
                     VLVADSTPQQLVAAMIGGSTAALVPASTRKAGAPLLRVCGLSAAARFEDVSFDVRRGE
                     IIGVTGLLGSGGKAVVRSLFGLEPGVRGHIELDGSAYVPDDPSNAVRRGIAFVPEDRR
                     AHGIALDLAVRENISLASLKRLVRHFMIDRRREKALVQQRMDDLQVRAPGTEAPARQL
                     SGGNQQKVVLAKWLSTRANLYLLDEPTVGVDIRAKAEIYRVIDELAAQGAAVLLFSTD
                     LIELQGITDRILILARGKLVQELVSKETTHQEILGWASAASASPSASWTHDHEAVQA"
BASE COUNT          649 a          945 c          982 g          507 t
ORIGIN      
        1 gatacagggg cagtgcgaca ccgaagagac ggccatgacc cagcgtcgag aaagcctgcg
       61 gcaagacctg gttcaggagg taaataggct gtccgccgtc cgtcgcgagc tgctggatgc
      121 tctggcctat gaacaatgtg ccaagcgtgg ccagaaaggg ctctacgccg aacgatgcaa
      181 tcagtacgcc attgaacaac ccaaccgcga gggccgcgcc cagtgcagcg acgatcgcga
      241 tcggcaggcc gacgtgtcgc gccacgagcg tcacgaatac caggctcgcg agatcgacgg
      301 ccgtgccgac tgagagatcc accgcgccga gcgacgccac caccgtcatg gcaagcgcca
      361 cgatcgcaag cggggcgacc gtgttgagca gcacgctgtc gatgttcgag agggtggcga
      421 acgctggagc gaacacggcg aagaatgcga ttgccgcagc gaaggcgaag accagcgcat
      481 agcgcgtcca gcctttgatt gggatcgtat gtgcgaaggg gcgaaggatg agctcacgca
      541 tggctgctct tctccaggtt gcgtcggcgc agtagtgccg tgagcgaaac gacgaacaag
      601 atcaatgcgc cttcgacgcc gctgatccag tagctcgaca cgttgtccag ttggaagcca
      661 ttcgcgacaa ggccgaggaa caggacgctc aaccaggtgc ccgccacggt cggtacgagc
      721 cgtcgcgaga acacgacacc aagaagcgcg gcagcgatca cggcgagaag attctctccg
      781 gcgccgggtg cgctgccgct cagaagcgcc gtggaggcga gggcggcgat gccggccgac
      841 agcccgcaca ctacatagct cgccgcgacg tagccttcag ccctcagtcc agccgcgcgg
      901 accgctgcgg gatgactgcc cgacgcgtgt agccgcagtc cgaaccgcgt aaagtgcccg
      961 agccagacga acatcaggcc cacaccgaca aacgcataag agagccatgg aatggcgaac
     1021 gggccgttat cgagaagggc cgcgagggtc ggtccggtcg cggaaacggt cgagtttttc
     1081 gtaacgacca gctctagccc agccacgatg ttcatcgagg tgagcgtggc gagaagggga
     1141 agcatgcgca gtacgacaac cgcgaacgcg ttgaatacgc cgaccgccgt accggccgag
     1201 agcgtgagcg cgatcgccgt cggcgaagca agaccgttgg cgagcgaagt cgcataaacg
     1261 gccgcacaaa agccgaggtt cgctgcaatc gagagatcga tgccgccggc gatgccgttc
     1321 gcgccaccac cgatcaagac aagcgtcagg ccgaacgcga gcgtaccgat cactgccgtc
     1381 tgctgcatca cattggcgag gttgcctact gtgaagaaga gtggcgagct tgtggcgaag
     1441 actgccagca ccgcgaaaat tgctaaaagc gcgccacttt gcagccacca ttgcggcagt
     1501 ttgaaagatc tcgcgagagc gagcacattg ccgcgcgatt gtttggtttg aacttgactc
     1561 atgcttgcac cgcttcatga tcatgggtcc aactcgcgct cggactcgca cttgctgcgc
     1621 tcgcccagcc aaggatttcc tgatgagttg tctctttcga gaccagctcc tgcacaagct
     1681 tcccgcgtgc gaggatgaga atccggtcgg tgattccctg caattcgata aggtcagtcg
     1741 aaaacagcag taccgctgcg ccctgtgcgg cgagttcgtc aatgacccgg tagatctctg
     1801 ctttcgcacg aatatcgaca cctacagttg gttcgtcgag caagtacagg ttcgcgcgcg
     1861 tgctcagcca tttcgccagg acgaccttct gttgattacc gccagagagc tgacgcgcag
     1921 gcgcctcggt acccggcgcg cgaacctgca ggtcgtccat gcgttgctgc accagtgcct
     1981 tctcgcgacg acgatcgatc atgaaatgcc gcacgagacg cttgaggctc gcgagcgaga
     2041 tgttctcgcg aacggccaag tcgagcgcga tgccatgcgc tcgcctgtcc tcaggcacga
     2101 aagcgatacc gcggcgcacg gcattgctcg gatcgtccgg cacgtaagca ctgccatcca
     2161 gttcgatgtg cccgcgtacg ccgggttcga gtccgaacag gctgcgcacg accgctttgc
     2221 cgccggagcc gaggagccct gtcacgccga taatctcgcc gcggcgtacg tcgaagctga
     2281 cgtcttcgaa gcgagcagca gcacttagcc cgcagacgcg caggagcggc gcaccggcct
     2341 tgcgtgtcga ggcggggaca agtgcagcgg tactcccgcc gatcatcgcg gcgaccagct
     2401 gttgcggcgt tgaatcggcc accaggacgc gggccacgtc ccgtccatcg cgaagaacgg
     2461 tcacgacgtc gcagagcgct tcgatctcgt cgagatagtg ggaaacgtag aggatcgcaa
     2521 gaccgcgctc gcgtaacctg cgaatcgccg tgaacaattg ctcggcttca tgccgcgcga
     2581 gtgcggcggt gggttcgtcg aagacgagca cgcgaggagc gctgagcagc gcacgtgtga
     2641 tctgcacgag ttgctgctca gcaacactca actcggctat gagccgggtc ggctcgatat
     2701 cgataccgaa atgctcctgc acggcggtgc gcgcgaaacg gcgcatgctc gcggcgttga
     2761 gaaccggcag gaatccgaag gtagtctcgt tgccgagcag taacgcttcg gccacggtca
     2821 gggtcggggc cagcaggcgg tcctggtgca cgatctctat gccaagccgg cgtgcgtcgg
     2881 aaggactgtt gatcgatgcg gctatgccat cgagcaccac ctcaccttcg tctgaacgat
     2941 ggatgccacc gaggactttg atgagggtcg atttccccgc accgttctgg ccgatcagtc
     3001 catgcacttg tccaggcgcc aagtcgagcg agacgtggcg caatgccggt atcccgtcga
     3061 actgcttgga gatggcccgc agt
//
LOCUS       DATGBK010000860         2167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_288245, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000860 DATGBK010000000
VERSION     DATGBK010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288245"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..317)
                     /locus_tag="VKJ77_12010"
     CDS             complement(<1..317)
                     /locus_tag="VKJ77_12010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014899772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC46037.1"
                     /translation="MATVSSTRTSDLNLHHVSKRFAGDDHAVPVLDRIDLSVKSGEFV
                     AIVGASGCGKSTLLRLIAGLDDQFDGDIEFSGERVRTTDLARGIVFQDHRLFPWLNVE
                     QNIA"
     gene            complement(357..1181)
                     /locus_tag="VKJ77_12015"
     CDS             complement(357..1181)
                     /locus_tag="VKJ77_12015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46038.1"
                     /translation="MSTPSLELETGSGAIAASGESGESGKAGRWRGWVIPAVALLSWW
                     FVSRHVVAGHGMMTSPAQVLHTAIDQTRSGALWRALSASLARELTGFTLGASLGLLLG
                     ALLGVSPFANRLIGPSFNAFKQVSLFAWIPLISVWFGLGDVAKVVFLSLAALVPVVAH
                     TSDGIRAVSPALLDVARVFRYSKLQTVRQVVLPAALPSIFTGIYLELIYSWLATLGAE
                     YLLVAGSGIGNTLVDGSEQFRMDLVVFGVIVIGITGWALNALARAIQQRWFRDPAA"
     gene            complement(1194..2030)
                     /locus_tag="VKJ77_12020"
     CDS             complement(1194..2030)
                     /locus_tag="VKJ77_12020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012747045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46039.1"
                     /translation="MANSIARTLNPGQRVSGDGTRGHTASLARSLGWIALPWLVPVAC
                     SVLWVLGSHYGWISAQILPSPTLVFDTLGGLASTGELWMHIGASLSRIAVGFTGGVLL
                     GLLLGAWLGLSRTAEAYILPSFNAIVQVPVLGWLPFLMIVVGIGEPLKYLLIGHAALV
                     PVTLSTLQGFRRTPPAYLDVARVFRYSRRQTIFNVILPSAVPVIGTGIRLAFTKAWLT
                     LVVVELVASSEGLGYLIVYGRQLFQLDLVLASVLIVGAIGYAADRLLTVLEHKLSPAR
                     SA"
     gene            complement(2060..>2167)
                     /locus_tag="VKJ77_12025"
     CDS             complement(2060..>2167)
                     /locus_tag="VKJ77_12025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017329855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC46040.1"
                     /translation="VNGWFEPKYLDQALKTLKLENYWPRFDPSGKPLAS"
BASE COUNT          497 a          677 c          667 g          326 t
ORIGIN      
        1 gcaatgttct gctcgacgtt gagccacgga aacagcctgt gatcctggaa cacgataccg
       61 cgcgcaagat cggtggtgcg aacccgctcg ccgctgaatt cgatgtcgcc gtcgaactga
      121 tcgtcgagcc ccgcaatcag gcgcagcagc gtggacttgc cgcaaccgct cgcgcccacg
      181 atagccacga actcgccgct cttcaccgac aggtcgatgc gatcgagcac gggcactgcg
      241 tggtcgtcgc cggcgaaacg cttggagacg tgatgcaggt tgagatcact tgttcgggta
      301 ctggagacgg tcgccatgat gatatggact ctttatgaaa tgggggaaat gtgcaatcaa
      361 gcagccggat cacggaacca gcgttgctgg atggcgcggg ctaacgcatt caacgcccat
      421 ccggtgatac cgatcacgat cacaccgaac accacgagat ccatgcggaa ctgttcgctg
      481 ccgtcgacca gcgtattgcc gatgccgcta cctgcgacca gcagatactc cgcaccgagc
      541 gtcgcaagcc acgaataaat gagctcgaga tagatgccgg tgaagatgga cggcaatgca
      601 gctggcagaa cgacctgtct gacagtctgt aacttgctgt atcggaacac gcgggcgaca
      661 tcgagcagcg caggggagac cgcgcggatg ccgtcgcttg tatgcgcgac caccggcacc
      721 agcgcggcga gcgagaggaa cacgactttc gcgacatcgc cgagaccgaa ccatacggag
      781 atcagcggta tccaggcaaa caaggagacc tgcttgaacg cattgaagct gggcccgatc
      841 agccggttcg cgaagggcga gacaccgagc aacgcaccca gcaggagccc aaggcttgcg
      901 ccgagcgtga agccagtcag ttcgcgtgcc agcgatgccg agagcgcacg ccacagcgca
      961 ccgcttcgcg tctggtcgat agccgtatgc aacacctgcg caggcgaggt catcatgccg
     1021 tgcccggcga ccacatggcg cgagacaaac caccaggaga gcagggcgac agccgggatg
     1081 acccagccgc gccagcgtcc ggctttgccc gattcgcccg attcgcccga agcggcgatg
     1141 gccccggagc cggtttcaag ttcgagagac ggcgtggaca tgtcgatgct ccttcaggcc
     1201 gaccgcgcgg gcgacagctt gtgttcgaga accgtaagca ggcgatccgc ggcatatccg
     1261 atcgcaccca caatcagcac cgatgcaagc accagatcga gctggaacaa ctgccgtcca
     1321 tacacgatca gataaccaag cccttccgac gatgccacca gttcgaccac gaccagcgtg
     1381 agccacgcct tggtgaacgc gaggcggata ccggtgccga tgaccggcac ggccgaaggc
     1441 aggatcacgt tgaagatcgt ctggcggcgt gaataacgaa agacgcgtgc aacatcgaga
     1501 taagcgggcg gtgtccggcg aaatccctgc agcgtgctta aggtgaccgg aacgagcgcg
     1561 gcatgcccga tcagcaagta cttcaacggc tcgccgatac ccaccacgat catgagaaac
     1621 ggcagccatc ccagtaccgg cacctgcacg atggcgttga agctggggag gatgtaagcc
     1681 tcggctgtgc gcgacagtcc gagccatgcg cccagcagca agccgagcaa gacgccgccc
     1741 gtgaagccga ccgcgatccg cgacaaactc gcgccaatat gcatccacag ttcgccggtg
     1801 ctggcgagac cgccgagggt atcgaagacg agggtgggcg agggcaggat ctgcgccgag
     1861 atccagccgt agtgcgagcc gagcacccat aaaacggagc aggccactgg cacgagccag
     1921 ggcaatgcga tccagcccag cgagcgcgcc aggctcgccg tgtgaccgcg ggtgccgtcg
     1981 cccgacaccc gttggcctgg attcaaagtg cgagcgatgc tgttcgccat gaccggattc
     2041 tccagaaaaa ttcagacgtt cacgatgcca gcggcttacc cgacggatcg aaacgcggcc
     2101 agtagttctc aagcttcagc gtcttcaagg cctgatcgag atacttcggt tcgaaccagc
     2161 cgttcac
//
LOCUS       DATGBK010000861         2394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148886, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000861 DATGBK010000000
VERSION     DATGBK010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148886"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..629
                     /locus_tag="VKJ77_12030"
     CDS             <1..629
                     /locus_tag="VKJ77_12030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HMC46041.1"
                     /translation="AAETRNSILDAAERVFFEKGVSRTTLADIALEAGVTRGAIYWHF
                     ANKGDLFTAMFDRSLLPLDELVEATLDTREADPLGRIRDIFIWCMRNIALDEQRRRVF
                     DILFLKCEFVEDMGPVRERHQTNMREGKEKIERGLRNAVDKGQLPAMLDTRHATTILH
                     ALFTGILYDSLMWPESIDLKNDAERLIDSCFDVMRYSPHMLLRPAESS"
     gene            complement(649..1413)
                     /locus_tag="VKJ77_12035"
     CDS             complement(649..1413)
                     /locus_tag="VKJ77_12035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HMC46042.1"
                     /translation="MEVADALRIPLELAQVREALGDLALVRASIDNCESLVRLAGGEY
                     TLKLTVPLGALRAHYAIRAHVADATRLPRHDGQSGDVDAQTLSFKARGEGVGSLRGQI
                     AVALIPDANGASTWIEYTVWATLTGPLAGLPARQIENSLREVADDFFIEFCEVVRAKH
                     GQPSAVVPEPAVSRRHVFLRPISMSAAFARHATPATQKSRAAATADAIGGVLRHRLPG
                     HAPRHPHPHSLPAWAWAAMICCVAVFLFLAQRYGLR"
     gene            complement(1465..1827)
                     /locus_tag="VKJ77_12040"
     CDS             complement(1465..1827)
                     /locus_tag="VKJ77_12040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HMC46043.1"
                     /translation="MSTDTHHIEISLNTRRHRVIHQGVTFADTRAALTVIETGHDPVH
                     YFPRADVNLARLSKSTHTSHCPYKGDATYYHLLTEDGPVENAVWSYEQPKEGVAQIKN
                     YLAFYPSRIDRIDETAGS"
     gene            complement(2076..>2394)
                     /locus_tag="VKJ77_12045"
     CDS             complement(2076..>2394)
                     /locus_tag="VKJ77_12045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HMC46044.1"
                     /translation="GDVSFTSGGVGLDESHALIREQAHWPLSLRFTGPTSDYLSDVHV
                     RIADAKDAEVLKTDAMGPYMLVKLPPGHYTVYAKYKDSEKKQGVTVAGNGKAKADFHW
                     SMQ"
BASE COUNT          461 a          730 c          719 g          484 t
ORIGIN      
        1 aagcggcaga gacgcgcaat agtattctcg atgcggcaga acgggttttt ttcgagaaag
       61 gcgtttcgcg caccacacta gccgacatcg cgctggaagc cggcgttacg cgcggcgcaa
      121 tctattggca tttcgcgaac aagggcgact tgtttaccgc catgttcgac cgcagcctgt
      181 taccgcttga tgaactggta gaagcaacgc tcgacaccag ggaggccgat ccgctcggcc
      241 ggatccgcga catcttcatc tggtgcatgc gcaatatcgc gctcgacgag cagcgccggc
      301 gcgtattcga catcctgttt ctaaagtgtg agttcgtgga agacatgggg ccggtgcgcg
      361 agcggcatca gacgaacatg cgcgagggga aagagaagat cgagcgcgga ttgcgcaatg
      421 cggttgacaa aggccagttg ccggccatgc tcgacacgcg ccacgccacc accatcctgc
      481 acgcgctctt caccggcatt ctctacgact cgctgatgtg gcctgagagc atcgacctca
      541 agaatgatgc cgaacgcctg atcgattcct gtttcgacgt catgcgctac agccctcaca
      601 tgctgctgcg tcccgccgaa tcgtcgtagc cgggtgatgc ccacggtgct atcgcagacc
      661 gtagcgttgc gcgagaaaca ggaacacggc gacacagcag atcatcgcgg cccacgccca
      721 agcgggcagg ctgtgcggat gcggatggcg aggcgcgtga cccggtagcc ggtggcgcaa
      781 gacgccgcca atcgcatcgg ctgtggctgc cgcgcgggac ttttgcgtcg ccggggtggc
      841 gtgccgggca aacgccgccg acatggagat tggccgtaag aacacatggc ggcgcgagac
      901 agctggttcc ggcacaaccg cagacggctg gccatgcttc gcgcgcacga cttcgcagaa
      961 ttcgataaaa aaatcgtcgg cgacttcacg cagcgagttt tcgatctggc gcgccggcaa
     1021 acctgccagc ggtccggtga gcgtcgccca gacggtgtat tcaatccacg tcgatgcgcc
     1081 gttcgcgtcc gggatcagcg ccaccgcgat ttgtccgcgt aacgatccca cgccttcgcc
     1141 gcgcgccttg aaactgaggg tttgcgcgtc gacatcgccg gattgcccgt catggcgtgg
     1201 caaacgggtt gcgtctgcaa cgtgtgcccg gatcgcgtag tgcgcccgca acgcgcccag
     1261 cggcacggtt aacttcaacg tatattcgcc accggcaaga cgcaccaggg attcgcagtt
     1321 gtcgatactc gcgcgcacca gcgcaagatc tcccagcgcc tcgcgcacct gagcgagttc
     1381 gagcggaatg cgtaaggcat cggctacttc catcgggccc tcctgtcgca tggcgcccat
     1441 tgtttttggt ttcaacctgg tgtttcagct acccgcagtc tcgtcgatac gatcgatccg
     1501 cgacggataa aacgccagat aattttttat ttgcgcgacg ccttctttcg gctgctcgta
     1561 gctccagacg gcgttttcga ccggaccgtc ctccgtcagc agatggtagt acgtagcatc
     1621 gcccttgtaa gggcaatgtg aggtatgcgt ggattttgag aggcgcgcca ggttgacgtc
     1681 cgcacgcggg aaataatgca ccggatcgtg gcccgtttcg atcaccgtca aagccgcgcg
     1741 ggtatcggca aacgtcacgc cctgatgaat cacgcgatgg cgtcgcgtat tcagcgagat
     1801 ttcaatgtga tgggtgtccg tgctcatcgc gcgctcccgg taccaaaaaa ctgaacgtcc
     1861 gccgtcgcgt ttgcagcagc gacataaaaa agccacgggt tttccgggac ccgtggcttc
     1921 attatgtgac aacttggggg ggcttgtgca acctccgtta gcgtctttgg tacctgcgcc
     1981 acacttcacg aatcgccgca gtcttttgct tcatatgcgg ttttgcgtac ggtggctcac
     2041 cacggcgcat ggtgcgtttg atggcgtttg acggcctact gcatggacca gtggaaatcg
     2101 gccttcgcct tcccgttgcc ggccaccgtc accccttgct tcttttccga gtccttgtat
     2161 ttggcgtaaa ccgtgtaatg acccgggggc agcttcacca gcatgtacgg gcccatggcg
     2221 tcggtcttga gcacttctgc gtccttagca tcggcaatac ggacgtggac gtcagagaga
     2281 tagtccgacg tcggccccgt gaaacgcaac gagagcggcc aatgcgcctg ttcgcgaatc
     2341 agcgcgtgcg attcgtccag gcccacgccg ccggatgtga acgacacgtc gccc
//
LOCUS       DATGBK010000862         5096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334253, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000862 DATGBK010000000
VERSION     DATGBK010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5096
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334253"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1340
                     /locus_tag="VKJ77_12050"
     CDS             <1..1340
                     /locus_tag="VKJ77_12050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC46045.1"
                     /translation="PLSLLYNFSAVIVGMVHALMPLAVLTMLSVMENIDRRLPSAAAT
                     LGARPGTVFWKVYFPLSLPGVAAGALMVFVTAIGFFITPTLLGGRHQTMITQLIIDQV
                     MQALNWGFAGAISVLLLVVVLLVFLIYDRMVGLSTMAGGSSSARGPKRGGGWSRKLGD
                     VILTALGNATDAVIGVFPQRRNRRAANGESLTLRVVVILLLVFLSAPAFLMIPLSFDS
                     ASGLAWPPHGFSLQWYRQITDSPLWMQAITRSMLVGIGTGILSMLIGTPAAFLLVRGG
                     MKGKAAMLAFILAPIVVPRMIIAVGVFYFFAKIGLIGSSFGLVLGHTVVAVPYVVITM
                     MAVLRNYDTRLDLAAHSMGARPWATLRRVTFPILGAGLMSSFLFAFATSFDELTIALF
                     SSGGLSTTLPKQFWDEITMQISPVIAAVSTCLFVFIAALIWVADRLRRRSLAS"
     gene            1367..2272
                     /gene="dapA"
                     /locus_tag="VKJ77_12055"
     CDS             1367..2272
                     /gene="dapA"
                     /locus_tag="VKJ77_12055"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006386243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HMC46046.1"
                     /translation="MLSAQQLRGVLPAIPTPVNSDDTINADAARALMRYLLKQGVDGV
                     VPLGGTGEYGALSRAERIRMAEITAEQAAGKIPVIAGVLDPGYHDAMQAGKDFAAAGV
                     DGLLVLTPYYTNPTQAGIRDYFMRYADESPLPILIYEIPYRTRIAIAPEVLHELSTHE
                     RIIGMKACNTDMWHFLRTVAGVDESFAVLSGEDTLFPLHVAAGARGGIVVTATLLPTA
                     WRKIYQLASEGKTQEALTLHRSLIPLMNMAFAETNPGPMKSVMDLIDVHAPAMLAPLV
                     QAEAGLSANLRVELEKQLDLFERGL"
     gene            complement(2288..3115)
                     /locus_tag="VKJ77_12060"
     CDS             complement(2288..3115)
                     /locus_tag="VKJ77_12060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006156573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC46047.1"
                     /translation="MSKSAAGTPEEPNETRAARSSLFVGSTEKAFQVLHAFDGPSRHM
                     TLVDIARVSGLDRSATQRLVHTLEALGYLYRVPETRNYGLTTKVLQFSYNYVRANELI
                     DKASPYLLDISRRLGETTNLLELDGHEIVFVARFPGQHLVNIDIVVGARLPAMFTAAG
                     IAILSRLSDERVREILAQTPLDPLTHFTETHPDKLLERVRKVARRGYAVIENETVLGD
                     ISVAAPVTDHGGMAVAAINISVPTSRWSIERVEAELAQHVQVAATSISKARLSSYKR"
     gene            3213..4373
                     /locus_tag="VKJ77_12065"
     CDS             3213..4373
                     /locus_tag="VKJ77_12065"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy acid oxidase"
                     /protein_id="HMC46048.1"
                     /translation="MLASVAEYRIAARRRLPRLAFDYLDGGAEDGIALRRNTDAYGQW
                     LFKPRVLTDVSRCSSTTQFFGHGAAAPLIVGPTGLNGLFWPRADELLAQAASRANLPF
                     VLSTASTSLLEDVRAAAPHGDLWMQLYVQQDRSIAEDLMRRASAAGYSTLVLTVDVPV
                     HGKRDHDTRNGFRLPLRLSPRLLVDCLTHPHWSWQMARAGSPQLKNIAKSVGEHADLS
                     RHAAMLSRQMDLTLGWRDLEWVRRHWKGKVIVKGIMGMEDALLAVAHGADGVVISNHG
                     GRQLGSTFAPLELLPGIVAAVRGKTEIFIDGGVRRGSDALKAVALGARGVLLGRAPLY
                     GVASRGAAGASEVLALMMDEMLISLRLLGCQEIGDLGPAFLGRDGSPDAGLL"
     gene            4459..4800
                     /locus_tag="VKJ77_12070"
     CDS             4459..4800
                     /locus_tag="VKJ77_12070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009893416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein YjdM"
                     /protein_id="HMC46049.1"
                     /translation="MPTLPACPLCAMENTYADADRIICADCGHEWSASDAAPADDDTN
                     AVVKDANGNVLVNGDSVVLIKDLKVKGSSITLKVGSKVKSIRLVGGDHEVDCKMDAGS
                     FMLKACYLKKV"
     gene            complement(4866..>5096)
                     /locus_tag="VKJ77_12075"
     CDS             complement(4866..>5096)
                     /locus_tag="VKJ77_12075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2278 family protein"
                     /protein_id="HMC46050.1"
                     /translation="PEENKPDQYFKFVPGNGVHDIHMNQGNGGQFEQDNGVYQDGALM
                     IAYADNTWRAFFFAFQSQTFDTDNQGNPIAGG"
BASE COUNT          891 a         1480 c         1622 g         1103 t
ORIGIN      
        1 ggccgttgag cctgctctat aacttctccg ccgtgatcgt cggcatggtc cacgcgctga
       61 tgccgcttgc ggtgctgacc atgctctcgg tcatggagaa catcgaccgc cgcttgccaa
      121 gcgctgccgc cacgctcggc gcgcgtccgg gcaccgtgtt ctggaaggta tatttcccgc
      181 tgtcgctgcc gggcgtggcc gcaggcgcgt tgatggtgtt cgtcacggct atcggcttct
      241 tcattacgcc cacgctgctc ggcggacgcc atcagaccat gatcacgcaa ctgatcatcg
      301 accaggtgat gcaggcgttg aactggggtt tcgcaggggc aatctccgtg ttgttactgg
      361 tggtcgtgct tctcgtgttc ctgatctatg accgcatggt aggtctctcc accatggccg
      421 gcggcagctc gtccgcgcgt ggtccgaagc gcggcggcgg ctggagccgc aaactcggcg
      481 atgtgatcct gaccgcgctt ggcaacgcca ccgatgcggt gatcggcgta tttccccaac
      541 gccgcaatcg ccgcgccgcc aatggcgaaa gcctgacgtt gcgcgtggtg gtgatcctgc
      601 tgctggtctt cctgagcgcg cctgcattcc tgatgattcc gctctcgttc gattcggcgt
      661 ccggtctcgc gtggccgccg cacggtttct cgttgcagtg gtatcggcag atcactgatt
      721 ctccgttgtg gatgcaagcg attacgcgct cgatgctggt gggtatcggc accggcattc
      781 tctcgatgct gataggcacg cccgccgcat tcctgctggt gcgcggcggc atgaagggca
      841 aggcggccat gcttgctttc atcctcgcgc cgatcgtggt gccgcgcatg attattgcgg
      901 taggggtgtt ctatttcttc gcgaagatcg gcttgatcgg atcgtcgttc ggcctcgtgc
      961 tgggacacac cgtggtggcc gtgccttacg tggtgatcac catgatggcc gtactgcgca
     1021 actacgacac gcggctcgac ctcgccgcgc acagcatggg cgcacgcccc tgggccacgt
     1081 tgcgccgcgt cacgttcccg attctcggcg cggggttgat gtcgtcgttc ctgttcgctt
     1141 tcgccacctc cttcgatgaa ctgactatcg cgctgttctc gtcgggcggc ttgagcacga
     1201 ccttgcccaa gcagttctgg gacgaaatca ccatgcagat ttcacctgtc attgcggccg
     1261 tttcgacgtg cctgttcgtc tttattgcag ccttgatctg ggtggcggac cggttgcgcc
     1321 gccgcagcct cgcctcttga ataaccttgt tttccaggac taactcatgc tttcagcaca
     1381 gcaactgcgc ggcgtcttgc cggccattcc gactcccgtc aattccgacg acaccatcaa
     1441 cgccgacgcc gcccgcgcgc tcatgcgcta tctgctgaaa caaggcgtgg acggtgtggt
     1501 tccgcttggc ggcaccggcg aatatggcgc gctgtcgcgt gccgagcgca ttcgcatggc
     1561 cgaaatcacg gcagagcagg cagccggcaa gatccccgtg atcgcgggcg tgctcgatcc
     1621 cggttatcac gacgcgatgc aagcgggaaa ggacttcgct gcggccggcg tcgatggtct
     1681 gctcgtcctg acgccctatt acacgaaccc gacgcaagcc ggtattcgcg attacttcat
     1741 gcgttacgcc gatgaatcgc cgctgccgat tcttatctat gaaatcccgt atcgcacgcg
     1801 gattgcgatc gcgcctgagg tgctgcacga gttgtcgacg catgaacgga tcatcggcat
     1861 gaaggcgtgc aacacggaca tgtggcattt cctgcgcacc gtcgcgggcg tggacgaatc
     1921 gttcgccgtg ctgagcggtg aggatacgtt gttcccgttg cacgtggcgg ccggtgcgcg
     1981 gggcgggatc gtggtgacgg ctacgttgct accgactgcg tggcgaaaaa tttatcaact
     2041 ggcgtcagag gggaagacac aggaagcgtt gacgttgcat cgctcgctga ttccgctgat
     2101 gaacatggcg ttcgcggaga ccaatcccgg tccaatgaag tcagtgatgg acctgatcga
     2161 tgtccacgcg cccgcaatgc ttgcgccgct ggttcaggcg gaggcggggt tgtctgcgaa
     2221 cttgcgcgtc gaactcgaga agcaactcga tttgttcgag cgcgggcttt gaagcttcgc
     2281 taaaccctca acgcttatag ctcgacagcc gcgctttcga aatcgaggtc gcggcgactt
     2341 gcacgtgttg cgcgagttcg gcttccacgc gttcaatcga ccaccgcgac gtgggcaccg
     2401 agatgttgat cgcggcaacg gccataccgc cgtgatccgt gaccggcgcg gcgacggaaa
     2461 tatcgccgag tacggtttcg ttctcgatca ccgcgtaacc tcgtcgcgcg accttgcgta
     2521 cgcgttcgag cagtttgtcg ggatgggttt cagtgaagtg cgtgagcggg tcgagcggcg
     2581 tctgcgccag gatttcgcgc acgcgctcgt ccgacagacg cgacaggatt gctatgcccg
     2641 cagcggtaaa catggccggc aaacgagcac cgaccacaat gtcgatgttc accagatgct
     2701 gccccggaaa gcgcgcgacg aacacgatct cgtggccgtc gagctccagc aggttggtgg
     2761 tttcgccgag acgccggctg atatcgagca gatacggcga ggctttgtcg atgagttcgt
     2821 tggcccgcac atagttgtac gagaactgca gcaccttcgt cgtcaggccg tagttgcgtg
     2881 tctcgggcac gcgataaagg tagccgagcg cttcgagcgt atgaacaaga cgctgggtcg
     2941 cgcttcggtc aagaccggat acgcgggcga tatcgacaag cgtcatgtga cggctcggac
     3001 cgtcgaaggc gtgcaggacc tggaaggctt tttcagtcga tccgacgaac aacgacgagc
     3061 gcgcggccct tgtctcgttc ggctcttcgg gcgtgccagc ggcgcttttg gacatgcgtg
     3121 tgtgggcttt gaaagtatcg gatcgtgatt gtcccaattg tagtgcaatc gaatcgcgcg
     3181 tttatgagcg attgcaattt cgtggagcat ggatgcttgc ctctgtcgct gaataccgga
     3241 tcgctgcacg gcggcgcctg ccgcggcttg cgtttgacta cctcgatggc ggcgccgaag
     3301 acggcatcgc gctgaggcgc aatactgatg cgtacgggca gtggctattc aaaccgcgcg
     3361 tgctcacaga tgtatcgcgc tgttcaagca ctacgcaatt ttttggacac ggagcggcgg
     3421 cgccgctgat cgtgggaccg acgggtctga acggactatt ctggccgcgc gccgacgaac
     3481 tgctcgcgca agctgcgagc cgcgcgaact tgccgttcgt gttgtcgacc gcgtcgacgt
     3541 cgctgctgga agatgtgcgc gccgccgcgc cgcacggtga cctgtggatg cagctctatg
     3601 tgcaacagga tcgcagtatt gccgaagact tgatgcggcg cgcaagcgct gcgggttatt
     3661 caacgctggt tcttaccgtc gatgtccccg tgcacggcaa gcgcgatcac gacacgcgca
     3721 atggtttccg cttgccgctg cgtttgtcgc ccagacttct cgttgattgc ctgacgcatc
     3781 cgcattggag ctggcagatg gcgcgcgcag gttcgccgca attgaagaac attgcgaaga
     3841 gcgtgggcga gcatgcggat ttatcgcgtc acgctgccat gctgagccgg cagatggact
     3901 tgacactggg ctggcgggat ctggagtggg tacgacggca ctggaaaggc aaggtgatcg
     3961 tcaagggcat catgggtatg gaagacgcac tgctggccgt tgcgcatggc gctgatggcg
     4021 tggtgatatc gaatcatggc ggacggcagt tgggaagcac gttcgcgccg ttggagctgc
     4081 tgccgggaat cgttgcggcg gtacgtggca agacggagat ttttatcgat ggcggagtac
     4141 ggcgcggcag cgacgcattg aaggctgtcg cgttaggcgc gcgcggtgtg ttgctcgggc
     4201 gtgctccgtt gtatggcgtc gcttcgcgcg gagcagccgg ggccagcgaa gtgctcgcgc
     4261 tgatgatgga tgaaatgctg atttcgctgc gcttgctggg gtgccaggaa attggcgatc
     4321 tcggtccggc gtttctcggg cgcgatggtt cacctgacgc tggtctgctt tagacgacgc
     4381 aatcggccag ccccttataa tcccggccgc cggagcgcgt tcgcgcctcc tcgactgtta
     4441 cgattatttg aaggaactat gcctacactc ccagcctgcc cactttgcgc gatggagaat
     4501 acctacgcgg acgccgatcg catcatctgc gcggactgcg gtcatgaatg gtcggcatca
     4561 gacgccgcgc cagccgatga cgacacgaat gccgtggtga aagatgccaa tggcaacgtg
     4621 ctggtcaacg gcgactccgt ggtgctcatc aaggacctga aagtgaaggg ctcgtcgatc
     4681 acgctgaagg tgggttcgaa ggtgaagagc attcggctgg taggcggcga ccacgaggtc
     4741 gactgcaaga tggacgccgg cagcttcatg ctgaaagcct gctatttgaa gaaggtttaa
     4801 catccagccg gagctcgaaa agccatccgg caaggatgac ttttcgaaga tctcacgcca
     4861 cgcgttcacc ctcccgctat cggattgccc tggttgtcgg tatcgaaggt ctgcgactgg
     4921 aacgcaaaga aaaacgcgcg ccacgtgttg tccgcatacg cgatcatcag cgcgccgtcc
     4981 tgatacacgc cgttatcctg ctcgaactgg ccgccattac cctggttcat atggatgtcg
     5041 tgaacgccat tgcccgggac gaatttgaaa tactgatccg gtttgttttc ttcagg
//
LOCUS       DATGBK010000863         2448 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_311298, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000863 DATGBK010000000
VERSION     DATGBK010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311298"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..850)
                     /locus_tag="VKJ77_12080"
     CDS             complement(<1..850)
                     /locus_tag="VKJ77_12080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMIN domain-containing protein"
                     /protein_id="HMC46051.1"
                     /translation="MSRKLLIKPFHSIESTATASHNWRRRQVLRAGASTIALALLGPK
                     LAYASSVLGVRVWPARDYTRVTIESDQPLQNTQQLLQGPDRLVVDLNGLDLDQELKDL
                     VSKITPNDPQIQSVRIGQYQPHVVRMVFDLKGSVKPQVFTLTPIGSYKYRLVFDLYPA
                     VAPDPLMDLLAQSEHKQQTFDQTNPNPTPPPATLSGPATPPKANVPDNTDEFFQKYAQ
                     SDLPRAPSTPAPVPPIAAIPKPRPIVKPAPPTALANQDDSSGSSTTDDYGFANPKSNK
                     SGTTRLL"
     gene            complement(832..1398)
                     /gene="tsaE"
                     /locus_tag="VKJ77_12085"
     CDS             complement(832..1398)
                     /gene="tsaE"
                     /locus_tag="VKJ77_12085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HMC46052.1"
                     /translation="MPDSLTRSFANPPAALLERRFDLPDEDATLAFGGRFAKAILQAR
                     GLNDSLNLTAPNERFPGLQVQLIGDLGAGKTTLVRATLRSLGHAGRVRSPTYTLVEPY
                     SLATETGPLELYHFDLYRFADPAEWADAGFREYFDAGAICLVEWPQRAGGLLGVPDLE
                     FTLEQEGEGRVLIARAFSETGKSCLESC"
     gene            1416..>2448
                     /gene="queG"
                     /locus_tag="VKJ77_12090"
     CDS             1416..>2448
                     /gene="queG"
                     /locus_tag="VKJ77_12090"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HMC46053.1"
                     /translation="MNRLPEHPVKRESASDDAVADTRRFRLDDEAALAELALRIKAWG
                     RELGFGAVGVSDADLTEAEEGLASWLEAGYHGEMDYMAKHAMKRARPAELVAGTRRVI
                     TVRMAYLPTSTLHGKARESAATADGQAIDWRAAEWARIGDPAAAVVSVYARGRDYHKV
                     MRSRLQQLADRIEGEIGAYGYRVFTDSAPVLEVELAQKAGNGWRGKHTLLLESDAGSL
                     FFIGEILVDIPLPPDALTNPDQAPEHDGAHCGSCTRCIDVCPTGAIVAPYRVDARRCI
                     SYLTIELKGSIPEDMRPLIGNRVYGCDDCQLICPWNKFAQAAPVADFDVRNGLDRASL
                     VMLFGWSAHD"
BASE COUNT          449 a          702 c          818 g          479 t
ORIGIN      
        1 tgagcaggcg cgtcgtcccg gacttgttgc tcttcgggtt ggcgaagccg tagtcgtcgg
       61 tcgtgctgct gccggacgag tcgtcctggt tcgccaacgc cgtaggcggt gccggcttga
      121 ctatgggacg gggctttgga atcgctgcaa taggcgggac gggcgcgggc gttgacggtg
      181 cgcgcggcag atcggactgc gcgtacttct gaaaaaactc gtcggtattg tccggcacgt
      241 tcgctttcgg cggcgtggca gggccgctca acgtggcggg cggcggggtt gggttcgggt
      301 tggtctgatc gaaggtttgt tgcttgtgct cggactgggc aagcaaatcc atcagcgggt
      361 cgggagcaac ggccggatac agatcgaaga ccagccgata cttgtagctg ccaatcggcg
      421 tcagcgtgaa cacttgcggc ttcactgacc ccttcaggtc gaacaccatg cgcaccacgt
      481 gcggctgata ctggccgatg cgcaccgact ggatctgcgg gtcgttcggc gtgatcttcg
      541 agacgagatc cttcagttcc tgatcgaggt cgagtccatt caggtcgacc acgagccggt
      601 ccggaccctg cagcagttgc tgggtgtttt gcagcggctg atcggactcg atcgtgaccc
      661 gcgtgtaatc gcgggcaggc cacacgcgca cgccgagcac cgaactcgcg taggcgagct
      721 tcggtccgag cagcgcgagc gcgatagtcg acgcacccgc gcgcagcacc tggcgccgcc
      781 gccagttgtg cgaggccgtg gcggtcgatt cgatcgaatg aaacggcttg atcaacagct
      841 ttcgagacat gactttcctg tttcgctaaa cgcgcgcgct atcagcacgc ggccttcgcc
      901 ttcctgttcc agcgtgaatt cgagatccgg cacacccagc aaaccgcccg cgcgttgcgg
      961 ccattcgacc aggcagatcg cgcctgcatc gaagtattcg cgaaagcctg cgtcggccca
     1021 ttcggctgga tcggcaaagc gataaagatc gaagtgatag agctctagcg gacccgtttc
     1081 cgtagcaagc gagtagggtt cgacgagcgt gtaagtggga ctgcgcacgc ggcctgcgtg
     1141 accgagtgag cgcagcgtcg cccgtaccag cgtggttttg cccgcgccca ggtcgccgat
     1201 caactggacc tgcaaaccgg gaaaacgttc gtttggcgcg gtcaaattta gtgaatcgtt
     1261 cagtccgcgg gcctgcagga tcgccttcgc gaagcggcca ccgaaggcaa gcgtcgcgtc
     1321 ttcgtcgggc aggtcgaagc ggcgttcgag cagcgcggcg ggagggtttg caaacgatcg
     1381 agtgaggctg tcgggcattc tcgtaaaatg tcgtgatgaa ccgtttgccg gaacaccctg
     1441 tgaaacgcga gagcgcgtca gacgacgccg tcgcggacac gcgccgcttc agacttgacg
     1501 acgaagccgc gctggctgaa ctcgcgctac gcatcaaggc gtgggggcgc gagctggggt
     1561 tcggtgcagt cggcgtcagc gacgccgact tgacggaagc cgaagaaggc ctggcttcgt
     1621 ggctcgaagc aggctatcac ggcgagatgg attatatggc caaacatgcg atgaaacgcg
     1681 caaggccagc cgagcttgtg gccggcacgc gacgtgttat tacagttcga atggcctatt
     1741 tgccgacatc cacgctccac ggcaaggccc gcgaaagtgc cgcgacagcc gacggtcagg
     1801 caatcgactg gcgcgcagcc gaatgggctc gaataggcga tcctgcggca gctgtggtgt
     1861 cggtctacgc tcgcggacgc gattatcaca aggtcatgcg cagccgcttg cagcagttgg
     1921 ccgatcgcat agaaggcgag attggtgcgt acgggtaccg cgtatttacg gattccgcgc
     1981 ctgttctcga ggtcgagctg gcgcaaaagg cgggtaacgg ctggcgtggg aaacacacgc
     2041 tgttgttgga aagcgatgcg gggtcgcttt tttttatcgg cgagattctg gtggatattc
     2101 cgcttccgcc cgacgcattg accaaccccg atcaagcgcc cgaacacgac ggcgcgcatt
     2161 gcggaagctg tacgcgatgc atcgatgttt gcccgaccgg ggcgatcgtt gcgccgtatc
     2221 gcgtggatgc tcgccgctgc atttcgtatc tgaccatcga gttgaaaggc agcattcccg
     2281 aagacatgcg gccgctgatc ggcaatcggg tttatggttg cgacgattgc cagctcatct
     2341 gtccgtggaa caagttcgct caggccgcgc cggttgcgga tttcgacgta cgtaacgggc
     2401 tcgatcgcgc gtcgctcgtg atgctgttcg gctggagcgc ccatgatt
//
LOCUS       DATGBK010000864         1537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_34180, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000864 DATGBK010000000
VERSION     DATGBK010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34180"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1310)
                     /locus_tag="VKJ77_12095"
     CDS             complement(<1..1310)
                     /locus_tag="VKJ77_12095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC46054.1"
                     /translation="MPTPPTHAGPQIEPRDGLSYVRGSTDIPLSDATVSRFLRGTAAK
                     YPDRPAVIFREQNIRWTWREFADEVDVLASGLLKLGVEAGDRVGIWSPNRAEWLLTQF
                     ATARMGAILVNINPAYRLAELEYALNKVGCKALIAAEQFKTSKYLEMLQTLAPELATD
                     EPGALKAARFPDLKAVIRMGEGATPGMLRFPDVMSRGRDHLNTAQLDEMESALTAHDP
                     INIQFTSGTTGNPKGATLTHHNVVNNGRYIAHSMLLTEQDSLCIPVPLYHCFGMVLAV
                     LACVSVGAAMVFPGEAFDPAATLAAVDEERCTALHGVPTMFIAELDLPNFDKYDLSRL
                     RTGIMAGSPCPIETMKKVVSRMHLREITIAYGMTETSPVSFQSSTTDPLDKRTTTVGQ
                     IQPHLEVKLVDPLGEIVPVGETGELCTRGYSVMKGYWGDEEKTS"
BASE COUNT          304 a          440 c          476 g          317 t
ORIGIN      
        1 tcgctcgttt tttcttcgtc gccccaatac cctttcatca ccgaataacc gcgcgtgcag
       61 agttcgcctg tctcaccgac cgggacgatt tcgccaagcg gatcaaccag cttcacctcc
      121 agatgcggct ggatctgacc aacggtcgtg gtgcgtttat cgaggggatc ggtggtcgag
      181 ctttgaaacg ataccgggct cgtctcggtc attccgtatg cgattgtgat ttcgcgcagg
      241 tgcatccgcg agacgacttt tttcatcgtt tcgatggggc acggcgaacc cgccatgatc
      301 ccggtacgca aacggctcag gtcgtactta tcgaagttcg ggagatcgag ttccgcgata
      361 aacatcgtcg gcacaccgtg caatgcggtg caccgctctt catcgacagc tgcgagggtg
      421 gcggcgggat caaaggcttc gcctggaaat accatcgctg cgcccacgga tacacacgca
      481 agcaccgcca gcaccatgcc gaagcagtga tacagcggca ccggaataca cagcgaatcc
      541 tgttcggtga gcagcatcga atgcgcgatg taacggccgt tgttcaccac gttgtgatgc
      601 gtgagcgtgg cgcccttggg gttgccggtg gtgccgctcg tgaactggat gttgatggga
      661 tcgtgggctg taagcgccga ttccatctcg tcgagctgtg ccgtattcag gtggtcacgg
      721 ccgcgcgaca tgacatcggg aaaacgcagc atgccgggcg tcgcgccctc gcccattcgg
      781 atcacggctt ttaaatcggg aaaacgcgct gctttaagcg cgccaggttc gtcggtggcg
      841 agttccggcg cgagcgtttg cagcatctcc agatacttcg atgtcttgaa ttgttccgcc
      901 gcaatcagcg ccttgcagcc gaccttgttc agcgcgtact cgagctccgc cagccgatac
      961 gccgggttga tattcacgag gatcgcgccc atccgcgcgg tggcgaattg cgtcagcagc
     1021 cattcggcgc ggttcggcga ccagatgcct acgcggtcgc ccgcttcaac gccaagcttg
     1081 agcaaacccg acgcgaggac atcgacttca tcggcgaatt cgcgccaggt ccaacggatg
     1141 ttttgctcgc ggaaaatcac cgcaggacgg tcgggatatt tcgcggccgt accgcgcagg
     1201 aagcgggaaa cggtggcgtc gctcagcgga atgtcagtcg agccgcgaac gtacgacaaa
     1261 ccgtcgcgtg gttcgatctg cggcccggcg tgcgttggtg gggtaggcat atcgacggtc
     1321 tcctccgtgg gatggcgcta taagacaaag acgaagcgcc atgaaagcga ttcggaaggc
     1381 caattgtgca tcgcgaggga gagctagggc attgagtgtt acccgcaaaa aggcccggat
     1441 caacgcatgt tcgttgtgca gttttgcgcg gaagtgcgcg ggcctggacg tatgtgttgg
     1501 cgcacgcatc gccgttttga gcggcaataa aaaagca
//
LOCUS       DATGBK010000865         3202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148901, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000865 DATGBK010000000
VERSION     DATGBK010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148901"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..371)
                     /locus_tag="VKJ77_12100"
     CDS             complement(<1..371)
                     /locus_tag="VKJ77_12100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015600209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46055.1"
                     /translation="MDTRNLKYFLAVADAGSVTRAAERLNIAQPALSQALTRMENDLG
                     VKLFSRTRRGADLTAAGLAIVEDVRMSVARIDAASHRAREIGAQRAGRLTVGFASAAL
                     LEVLPRAIAVLRASVPDVELVL"
     gene            494..1747
                     /locus_tag="VKJ77_12105"
     CDS             494..1747
                     /locus_tag="VKJ77_12105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46056.1"
                     /translation="MNWYRDISATEKRTLWSCFAGWALDGVDTQLFSLVIPTLLVTWG
                     IGKGQAGLIGGATLVAGALGGLLAGMLSDRYGRVRALQITVVWFSLFTFLSAFAQNFE
                     QLLALKALQGVGFGGEWTAGAVLLSETIRAEHRGKAMGIVQSAWGFGWAGAVLLYMLM
                     FSFVSPEWAWRLLFGIGVIPAGLVLYLRRNVVEPPRAVISAGSSRLALPAASSIFDRS
                     VIRTTIVGALIGVGAHGGYHAITTWLPTYLKTERHLSVLGTGGYLAVVITAFICGCFV
                     SAWLQDRIGRRLNVILFAVCCVATVNLYVFLPMGDTAMLFLSFPLGLFAAGIPATLGA
                     LFNELYPQGIRGTGVGFCYNFGRIVSAGFPVLVGHMGNSMPLGSALGIDAGIAYGLVV
                     VAALMLPETKNRPIATVAANAATRA"
     gene            1783..2664
                     /locus_tag="VKJ77_12110"
     CDS             1783..2664
                     /locus_tag="VKJ77_12110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC46057.1"
                     /translation="MQAQDTTVADQWSGANDINGTNDARITAIDAHAHVFVRGLPLAS
                     QRRHAPDYDATLDAYAGHLMANGISHAVLVQPSFLGTDNSFFLDVAKRYPRRFRGVAV
                     VDCSVTDAELALLDRTGVVGIRLNLIGLPVPQLSAPEWRRLLARVNALGWHVEVHREA
                     VDLHAVVGPLLEQGCTVVVDHFGRPNPHTGANDPGFGYLLSVAATGRVWIKLSAAYRS
                     AQGDDGTVLGTALASQLLDAYTPERLVWGSDWPHTQHQQLVDYDVTRRALDQWVPGAK
                     QREWILTRSARALYRFE"
     gene            2718..>3202
                     /locus_tag="VKJ77_12115"
     CDS             2718..>3202
                     /locus_tag="VKJ77_12115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HMC46058.1"
                     /translation="MSLPSAERRSAFRSLVESRHALLVPGAFNALSARVVADTGFGAL
                     YITGAGVTNMFLGLPDLGFIGLHEMADHTARIRDAVDLPLIVDADTGYGNALNVRHAV
                     RTLERAGADAIQLEDQVSPKKCGHFAGKAVISTSEMVGKLHAAVDAREDPNLLIVART
                     DA"
BASE COUNT          559 a          977 c         1007 g          659 t
ORIGIN      
        1 agcaccagtt cgacatccgg caccgacgcg cgcagcactg cgatcgcacg cggcagcacc
       61 tcgagcagcg ccgccgacgc gaatcccacc gtcagccgcc ctgcgcgctg agcgccgatc
      121 tcgcgagcgc ggtgcgaggc ggcgtcgatt ctagcgacgc tcatccgcac gtcctccacg
      181 atcgccagcc cggccgcagt caggtccgcg ccacgccgcg tgcggctgaa aagcttcaca
      241 cccaggtcgt tctccatgcg cgtgagcgct tggctcagcg cgggctgggc gatgttcaga
      301 cgttcggcgg cgcgggtgac gctgccggca tcggcgacgg cgagaaagta cttcaggttg
      361 cgcgtgtcca tattaaaacg atatgaaaga tgatcattta catcatatat gtttatccaa
      421 acgatcctta aaatgcttcc atggacgaga cgcacgaatg accctcgtca ccaaaaatag
      481 aagggagacg acagtgaact ggtaccgcga catatcggcg acggaaaaac gcaccctgtg
      541 gagctgcttc gccggctggg cactcgatgg cgtagacaca cagttgttca gtctcgtgat
      601 cccgaccttg ctcgtgacct ggggtatcgg caagggccaa gcggggttga tcggtggcgc
      661 gacgctggtc gccggtgcgt tgggtgggct gctcgcgggc atgctgtcgg accgctatgg
      721 ccgcgtgcgt gcgctacaga tcaccgtggt ctggttctcg ctctttacct tcctcagcgc
      781 cttcgcgcaa aacttcgaac agttgcttgc gctcaaggct ttgcagggcg tcggtttcgg
      841 cggcgaatgg accgcgggcg ccgtgctctt gagcgagacc atccgtgcgg aacatcgtgg
      901 caaggcaatg ggcattgtgc aaagcgcctg gggtttcggc tgggcaggcg cagtgcttct
      961 ttacatgctg atgttctcgt tcgtgtcgcc ggagtgggcg tggcggttgc tgttcggaat
     1021 cggcgtgatt cctgccgggc tcgtgcttta tctgcgccgt aatgtggtcg aaccgccaag
     1081 agcagtcata agcgcagggt catccaggct ggcgctgccc gcggcaagca gcatcttcga
     1141 tcgctcggtg atccgcacga cgatcgtggg cgcgttgatc ggcgtggggg cgcatggcgg
     1201 ttatcacgcg attacaactt ggcttcccac ctatctcaag actgagcggc atctgtccgt
     1261 actcggcacg ggcggttatc tcgccgtcgt cattacagca tttatctgcg gctgtttcgt
     1321 gagcgcctgg cttcaggacc ggatcggccg caggctcaac gtgatcctct tcgccgtatg
     1381 ctgcgtcgcg acggtcaacc tctacgtctt cctgccaatg ggcgacaccg cgatgctctt
     1441 cctcagcttc ccgctgggcc tcttcgcggc cggcatcccg gccacgctcg gcgcgctttt
     1501 caatgagctt tatccgcaag gcatccgagg caccggcgtg ggcttttgct ataacttcgg
     1561 gcggatcgtc tcggcaggtt ttccagtgct ggtcggtcac atgggcaact cgatgccgct
     1621 tggctcggcg cttggcatcg acgccggcat tgcctacgga ctcgtggtcg tggccgctct
     1681 catgctgccg gaaacaaaga accgaccgat cgcgacggta gcggccaatg ccgcgacccg
     1741 ggcctagacg gggaacacat gatcgacgaa cggattgaaa cgatgcaggc acaagacacg
     1801 acggtagcgg atcagtggtc tggcgccaac gacatcaatg gcactaacga tgcgcgaatc
     1861 accgctatcg acgcgcatgc ccatgttttc gtgcgcggct tgccgcttgc gtcgcagcgt
     1921 cgtcatgcgc ctgactacga cgcgacgctc gatgcctatg ccggccactt gatggcgaac
     1981 ggtatctcgc acgccgtgct ggtccagccc agttttctcg gcaccgacaa cagctttttc
     2041 ctcgatgtag cgaagcgcta tccgcgacgt tttcgcggag tggcggtcgt ggattgctcg
     2101 gttaccgatg cggagctcgc gctgctcgat cgcacaggcg tagtgggtat tcgattgaac
     2161 ctgatcgggt tgccggttcc tcaattgagc gcgcctgagt ggcgacgact gctggcgcgt
     2221 gtcaatgcgc ttggctggca tgtcgaggtc catcgtgaag cggtggattt gcacgctgta
     2281 gtaggtccac tgctcgagca gggatgtacg gtggtcgtcg accacttcgg ccgcccgaat
     2341 ccgcacaccg gcgccaacga tccgggcttt ggatacctgc tgtcagtggc ggcgacagga
     2401 cgcgtgtgga ttaagctgtc ggcggcctac cggagtgcgc aaggagatga cggaacagtc
     2461 ttggggaccg cacttgcaag ccagctgctt gacgcctaca cgcccgagcg tctggtctgg
     2521 ggtagcgact ggccgcacac gcagcaccag caactggtcg attacgacgt tacgcggcgc
     2581 gcgctcgacc aatgggttcc cggcgcgaag cagcgcgagt ggatcctcac tcgctcggcc
     2641 cgcgcgctgt atcgattcga ataagttgcg ccgcacgtca ctaacaagtc accaacgtca
     2701 acacggagag ttcaaccatg tcgcttccat ccgctgaacg tcgtagcgcc tttcgctcgc
     2761 tggtcgaaag ccggcacgcg ttgctcgtgc ccggcgcctt taacgcgctg agtgcgcgcg
     2821 ttgttgctga taccggtttc ggtgcgttgt atatcaccgg cgccggtgtg accaacatgt
     2881 ttctcgggct tccggatctc ggctttatcg gcctgcacga aatggctgac cataccgcgc
     2941 gtatccgcga cgcggtggac ctgccgctta tcgtcgatgc cgataccggc tacggcaacg
     3001 cgctcaacgt gcgtcatgcg gttcgtaccc tggaacgcgc gggcgccgat gctattcagc
     3061 tcgaagacca ggtaagcccc aagaagtgcg ggcatttcgc cggcaaggcg gtgatatcga
     3121 cgagtgagat ggtcggcaaa ctgcacgctg cggttgatgc tcgcgaggac cccaatctgc
     3181 tgatcgttgc ccgtaccgat gc
//
LOCUS       DATGBK010000866         1547 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56915, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000866 DATGBK010000000
VERSION     DATGBK010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56915"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..595)
                     /locus_tag="VKJ77_12120"
     CDS             complement(<1..595)
                     /locus_tag="VKJ77_12120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46059.1"
                     /translation="MMNPSAATQKTQKTQKTHQAQSGHARHWWSVARRFNTVAILVVL
                     VIAASFVSSDFFSVANLSNISRQVAGVGIMSVGMLLVVLTGGIDLSVGSIAALGSVVS
                     AMLIPQYGLSVALLVTLLVGGLCGFASGALIAWFRLTPFVVTLAMMTVARGVAMIVSN
                     GSPILVDDPGQALLDFGRHSYFGIPGPTLVMLIVFVIG"
     gene            complement(615..>1547)
                     /locus_tag="VKJ77_12125"
     CDS             complement(615..>1547)
                     /locus_tag="VKJ77_12125"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC46060.1"
                     /translation="LEEVFAIADRITVLKDGKRVDTVKPADLSMDELIRKMVGRPLSV
                     LFPQRHATLGDEVLKVTDLARGRAVRNVSFTLRAGEVVGLGGLIGSGRTEVARLIFGA
                     DTRDSGTIELKQKLLAVRSPMAAVKAGIGFVPEDRKGQGAVLSMPIRVNATLAALKSV
                     SLPGGFLAFGRERAFVQKLMEQLRIKARSMDADVSTLSGGNQQKVVLAKWFHADGDLI
                     ILDEPTRGVDVGAKVEIYTLINQLAERGKAVLVISSEHQELMGLCDRILVMGEGEIRG
                     ELQPADYSEEQILSLSLQRVPDEAPDEAPAALTH"
BASE COUNT          314 a          484 c          484 g          265 t
ORIGIN      
        1 cgccgatcac gaatacgatc agcatcacga gcgtcgggcc cggtatgccg aaatacgaat
       61 gacggccaaa gtcgagcagc gcctgacccg ggtcgtcgac gagaatcggc gaaccgttgg
      121 agacgatcat ggccacaccg cgcgcaacgg tcatcatggc gagcgtgacg acaaacggcg
      181 tgaggcggaa ccacgcgatc aacgcgcccg atgcaaagcc gcatagacca ccgaccagca
      241 gcgtgacgag cagggcgacg ctcaggccgt actggggaat gagcatggcc gagaccacgc
      301 tgcccagcgc cgcgatggag ccaaccgaca agtcgatacc gccggtcagc acgaccagca
      361 gcatgcccac tgacatgatg ccgacgcccg cgacctgacg cgagatgttg gacaggttcg
      421 ccaccgagaa gaaatcgctc gacacgaacg acgcggcgat cacgagcaca accaggatgg
      481 caaccgtgtt gaagcggcgc gcgaccgacc accaatgtct tgcgtggccg gattgcgcct
      541 gatgcgtttt ctgagtcttc tgagtcttct gagtggcagc gctgggattc atcatgcgag
      601 tctccgtgtc tggtttagtg ggtgagcgct gcgggcgctt cgtccggcgc ttcgtccggc
      661 acacgttgca aggagagcga gaggatctgc tcttcgctgt agtcggcggg ctggagttcg
      721 ccgcgaatct cgccttcgcc catcacgaga atgcggtcgc agaggcccat caactcctgg
      781 tgctccgacg agatcacgag caccgccttg ccccgttccg caagctggtt gatcagcgta
      841 tagatttcga ccttggcgcc cacgtcgaca ccgcgcgtag gttcgtcgag gatgatcagg
      901 tcgccgtccg catgaaacca tttggcgagc acgacttttt gctggttgcc gccggataac
      961 gtggagacat cggcgtccat cgagcgggcc ttgatacgaa gctgttccat caacttttga
     1021 acgaatgcac gctcgcggcc gaaggcgaga aagccgcccg ggaggctgac ggatttaagc
     1081 gcagcgagcg tggcgttgac gcggatcggc atcgacaaaa ccgcaccctg gcctttacgg
     1141 tcttcaggga cgaagccgat gccagccttg accgctgcca tcggcgagcg gacagccagc
     1201 agcttttgct tcagttcgat ggtgccggaa tcgcgggtgt ccgcaccgaa gatcagccgg
     1261 gctacttctg ttcgtcccga gccgatcagg ccacccagcc cgaccacctc gccggcgcgc
     1321 agcgtgaacg acacgttgcg cacggcacgg ccgcgggcca ggtccgtgac cttcagcact
     1381 tcgtcgccga gcgtcgcgtg acgttgcggg aacagcactg aaagcgggcg gccaaccatc
     1441 ttgcgaatga gttcatccat actgagatcg gcaggcttga cggtgtccac gcgcttgccg
     1501 tccttgagca cggtgatgcg gtccgctatg gcaaacacct cttccag
//
LOCUS       DATGBK010000867         2709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218909, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000867 DATGBK010000000
VERSION     DATGBK010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2709
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218909"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..808
                     /locus_tag="VKJ77_12130"
     CDS             <1..808
                     /locus_tag="VKJ77_12130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019939016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC46061.1"
                     /translation="LKTELVDRTSTAFRLTTAGQSLLGLARNVVDAARALREAAGQEV
                     VVGGKLRLGVIETVVHSWLSHYITYLNANYPKLDVDLTVDSSSVLQRRLLSGELDLVI
                     RVEGIDSTKIASSAIASYPVRWIARRGLLSRRATGLALRVLQRPIVTFGRGTAPQVAL
                     ESIVHTLARQENMRPEQTRITCSPSVAAIVQLVRDGYGVAGIPSLFVAKELQSGEFVE
                     LPLKPVPPPIIVSLCKPVDASVMVNAAANAAHVACSAYSKSIKKDFLEGL"
     gene            complement(805..1347)
                     /locus_tag="VKJ77_12135"
     CDS             complement(805..1347)
                     /locus_tag="VKJ77_12135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC46062.1"
                     /translation="MPHSAAVLETDRLVLRPPQRADFDDIYAMWSDLAVVRHVTGNAF
                     TKEEAWARLLRSAGHWALMEFGYWVVSEKRSGKFVGEVGFGQYKRGIDPAFDEAPEIG
                     WMLTTESQGQGYGTEAVRAALQWADTRWPEAEIVCIISPENAASLALARKCSFAESRT
                     TAYKGKPTVVFQREAPSSES"
     gene            1637..>2709
                     /locus_tag="VKJ77_12140"
     CDS             1637..>2709
                     /locus_tag="VKJ77_12140"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004186315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HMC46063.1"
                     /translation="MTELHDLSAREIAARYAAKTLTPVDYIEHVLAHVARWEPHVNAL
                     YAFNPDAARRQAQASARRWADGAELSVIDGVPVTLKEMIATEGDLVPQGSAGSRPHPA
                     SADSPIASRMREAGAVILGKTTAPDFGMLSSGLSSLHGVTRNPWQLSMNPGGSSCGAA
                     AAAAAGYGPLHVGTDIGGSVRLPAGWCGLAGFKPSHGRIPIDPYYTGRCAGPMTRTVD
                     DAAVLMQFLSLPDWRDATSLPPESIDWTIEAADVRGLRIGLMLDAGCGLDAQPEIMAA
                     VGEAADLFAAHGAQIVPVAPVLDRAMLDGLDRFWQARLWSELECLTEAERARVLPYIV
                     EWAGQGANVSGVEAVRGFGRTFE"
BASE COUNT          475 a          822 c          898 g          514 t
ORIGIN      
        1 gttgaagact gagctggtcg accgcacctc aaccgcgttc cggttgacga cggcagggca
       61 gagtctgctc gggctcgcga ggaacgtggt cgatgccgcg cgtgcgttgc gcgaggcggc
      121 gggtcaggag gtcgtggtcg gcggcaagct gcggctgggg gtgatcgaaa cggtggtgca
      181 tagctggctg tcgcactaca tcacgtatct caacgcgaac tatccgaagc tcgacgtgga
      241 tctcaccgtc gactcgagtt cggtgttgca gcgccgcttg ctgagcggcg aactcgatct
      301 cgtcatacgg gtggaaggga tcgacagcac caagattgca tcgagtgcga ttgcgagtta
      361 tccggtccgc tggatcgcga gacgcgggct gttgtcgcgg cgcgcgacgg ggcttgctct
      421 acgtgtcttg caacggccga tagtcacgtt cggccggggg acggcaccgc aagtcgcgct
      481 ggaaagcatc gtacatacgc ttgcccggca agagaacatg cggcccgaac aaacgcgtat
      541 tacgtgctcg ccgtcggtgg ccgcgatcgt tcaactggtg cgcgacggat atggcgtcgc
      601 cggtattccc agtctttttg tcgccaagga attgcaaagt ggcgagttcg tcgagttgcc
      661 gctgaagccg gttccgccgc caatcattgt gtcgctgtgc aagcccgtcg atgccagcgt
      721 gatggtcaat gcagcggcca atgccgcgca cgttgcctgt tccgcctact ccaaatcgat
      781 caaaaaagac ttcctggaag ggctttaact ttcgctcgag ggcgcctcgc gctggaacac
      841 aacggttggc ttgcccttgt aagcggtcgt gcgactttct gcgaatgaac attttctggc
      901 gagtgcaagc gacgccgcat tctccggcga gatgatgcaa acaatctccg cttcgggcca
      961 gcgtgtatcc gcccactgca acgcggcgcg cacggcttcg gtcccgtaac cctgaccttg
     1021 cgactctgtc gtcaacatcc atccaatctc cggcgcttca tcgaatgccg ggtcgatacc
     1081 gcgcttgtat tgcccgaagc cgacctcgcc gacgaacttg ccgctgcgct tctcgctgac
     1141 tacccaatag ccgaattcca tcaatgccca atgccccgcg cttcgaagca ggcgcgccca
     1201 cgcttcttcc ttcgtgaagg cgttgccggt gacgtggcgc acgaccgcga ggtccgacca
     1261 catggcgtag atatcgtcga aatcggcgcg ttgcggcgga cgcaggacga ggcgatcggt
     1321 ttccagaact gcggcggagt ggggcatggt cgaagcatgt gagcgtgtga gcgtggatag
     1381 gccagggcgc gccgttagcg gcgcagcctg aagggaacaa ggaatataac cgctcgggtc
     1441 gggaccggaa agtctgaaag tacatggcgg tcttgcagac cgttggttgt cagtgttcta
     1501 aaaaagtgct cgccggtcgg cacaaatcgc gctatccgtc gaaaattttg cgcggttact
     1561 gtcgctgcaa gggttcggtg cgcgtcactg gacgccgata gaaccgcgac ttcgaaccaa
     1621 gacgagttag acgaccatga cagagttgca cgacctcagc gcgcgggaaa tcgccgcgcg
     1681 ctacgccgct aaaacgctca cgccggtgga ctatatcgag catgtgctcg cgcatgtcgc
     1741 ccgctgggag ccgcatgtga atgcgctcta tgcgtttaat cccgatgccg cgcgccgcca
     1801 ggctcaagcc tccgcacgcc gttgggccga cggtgctgaa ctcagcgtga tcgatggcgt
     1861 gccggtgacg ctgaaggaaa tgatagcgac cgaaggcgac ctcgtgccgc agggatccgc
     1921 cggctcgagg ccgcatcctg cgagcgctga ttcacctatc gcctcgcgca tgcgtgaagc
     1981 cggcgcggtc atcctgggaa agacaacggc gccggatttc ggcatgttgt cgtcgggact
     2041 gtcgagcctg cacggcgtca cccgcaatcc ctggcaactc tcgatgaatc cgggcggctc
     2101 gagttgtggc gctgcggccg cagcagcggc cggctacggg ccgctgcacg tgggcaccga
     2161 cataggcggc tcggtgcgct tgccagccgg ctggtgcggt ctggcgggct tcaagccatc
     2221 gcacggtcgc atcccgatcg atccgtatta caccggccgc tgtgctggcc cgatgacccg
     2281 caccgtcgac gacgccgcgg tcctcatgca attcctctcg cttcccgact ggcgcgatgc
     2341 gacgagcctg ccgcccgagt ccatcgactg gacgatcgag gccgccgatg tacgcggctt
     2401 gcgcatcggc ctgatgctcg acgctggttg cggcctggac gctcaaccgg agatcatggc
     2461 ggcggtgggg gaggcagcgg atctgttcgc ggcgcatggt gcgcagatcg tgccggtggc
     2521 gccggtgctg gaccgcgcga tgctcgacgg cctcgaccgc ttctggcaag cgcggctctg
     2581 gagtgaactg gagtgcctga ccgaggccga gcgcgcgcgc gtgctgcctt atatcgtcga
     2641 atgggcgggg cagggcgcga atgtgtcggg cgtggaggcg gtacgcggtt tcggccgtac
     2701 cttcgagat
//
LOCUS       DATGBK010000868         2906 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_265208, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000868 DATGBK010000000
VERSION     DATGBK010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2906
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265208"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..675
                     /locus_tag="VKJ77_12145"
     CDS             <1..675
                     /locus_tag="VKJ77_12145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC46064.1"
                     /translation="PDEADIKQKVGVLNRFFFRELGFTSNHNDYYDPDNSHLNMVLKR
                     RRGIPISLAVIYLEMSDQLGIPVRGVSFPAHFLLRVTTPDGDVMLDPTTGHSLSESAM
                     VEMLEPYVQRVGESIGSALRVLLQPATRREIIGRMLRNLKSIYLQTERWQRLLAVQQR
                     LVILMPESIEEVRDRGFAYARLDYLRPALEDLRRYLDDRPDAEDATVVETELHELRQR
                     TQHNGE"
     gene            complement(823..1581)
                     /locus_tag="VKJ77_12150"
     CDS             complement(823..1581)
                     /locus_tag="VKJ77_12150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004189909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HMC46065.1"
                     /translation="MDIQDNVFLVTGGASGLGAATAQLIRDHGGKVVLADMNEAGGEK
                     LAKELGGVFVKCDVSREEDGQRAVDAATQFGTLRGLVNCAGVAPAMKTVGKDGPHALD
                     LFAKTIGVNLIGTFNMIRLAAAAMSKNEPNAAGERGVIVSTASVAAYDGQIGQAAYAA
                     SKGGVVGMTLPIARDLSRNGIRVMTIAPGIFETPMLLGMPQEVQDALGAMVPFPSRLG
                     KPNEYAMLVKQIFDNPMLNGEVIRLDGAIRMQPK"
     gene            complement(1734..2396)
                     /gene="adk"
                     /locus_tag="VKJ77_12155"
     CDS             complement(1734..2396)
                     /gene="adk"
                     /locus_tag="VKJ77_12155"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006398497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004017 - adenylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HMC46066.1"
                     /translation="MRLILLGAPGAGKGTQATFIKEKFGIPQISTGDMLRAAVKAGSP
                     LGVEAKRFMDAGELVPDTLIINLVKERLQEPDCTNGYLFDGFPRTLPQADAMKQAGVA
                     IDYVLEIDVPFEDIIVRMSGRRVHAASGRTYHIKFNPPKQEGKDDVTGEPLIQRDDDK
                     EETVKKRLDVYVAQTKPLIEYYNTWSQHGDNNGLKAPEYRRISGLGAVDEIRTRVFDA
                     LT"
BASE COUNT          545 a          883 c          896 g          582 t
ORIGIN      
        1 cccgatgagg ccgacatcaa gcaaaaagtc ggcgtgctga atcgtttttt cttccgcgag
       61 ctgggtttca ccagcaatca caacgattac tacgatcccg ataacagcca cctgaacatg
      121 gtgctcaagc ggcgtcgcgg aattccgatt tcgctggctg tcatatatct ggagatgagc
      181 gaccagcttg gtattcctgt gcgcggcgtg tcgtttccgg cgcacttcct gctgcgcgtg
      241 accacgcccg acggcgatgt gatgctcgat ccgaccaccg gccattcatt gtccgaatcg
      301 gcgatggtcg agatgctcga gccgtatgtg cagcgagtgg gcgaatccat tggcagcgca
      361 ctgcgggtct tgttgcagcc ggccacgcgt cgggaaatca tcggacgaat gctgcgtaac
      421 ctgaagagca tttatctgca gaccgagcgc tggcaacggc tgcttgccgt tcagcaacgg
      481 ctcgtgatcc tgatgccgga aagtattgaa gaagtgcgcg atcggggctt tgcttacgcg
      541 cgcctggatt acttgcgccc ggcgttggaa gacctgcgtc gatacctcga cgatcggcct
      601 gacgccgaag acgcgaccgt ggtggagacg gaattgcatg agctgcgcca gcgcacgcag
      661 cacaacggcg agtaaatcgc ctcgagcttt cgcaggctca catctcatca aacccataaa
      721 aaaacggcgg cccatcattt cgatggccgc cgtttttctt cttggcgtgt aagcccgcga
      781 gctagtcagc tagccgctac cagccccgtc gagccgaaaa atttacttcg gctgcatccg
      841 gatcgcgcca tccaggcgaa tcacttcgcc gttgagcatg gggttgtcga agatctgctt
      901 caccagcatg gcgtactcgt tcggtttgcc gagacgcgaa gggaacggca ccatcgcgcc
      961 gagcgcgtcc tgcacttcct gcggcatgcc gagcaacatc ggcgtttcga agatgcccgg
     1021 cgcaatcgtc atcacgcgaa tgccgttgcg cgacaaatcg cgcgcgatcg gcagcgtcat
     1081 gcccaccacg ccacctttcg atgccgcata cgccgcctgg ccgatctggc catcgtaagc
     1141 cgccaccgat gccgtgctca cgatcacgcc ccgttcgccc gccgcattcg gttcgttctt
     1201 cgacatggcc gcagccgcca accggatcat gttgaacgtg ccgatcaggt tcacgccaat
     1261 agtcttggcg aacaggtcga gcgcatgcgg gccatccttg cccacggtct tcatggccgg
     1321 cgcgacgccc gcgcagttga cgagcccgcg caaggtgccg aactgcgtcg cggcgtccac
     1381 ggcgcgctgg ccgtcttcct cgcggctcac gtcgcatttc acgaacacac cgccgagctc
     1441 cttcgcgagc ttctcgccgc cggcttcgtt catgtcggcg agcacgacct tgccgccgtg
     1501 gtcgcggata agctgagctg tcgccgcacc gaggcccgat gcgccgccgg tgacgagaaa
     1561 aacgttgtcc tggatgtcca tgctgtgtgc tccttgatga tggttatacg taaaacgtgt
     1621 tcgcgtgttc gtcccaagga tcgctcagaa cgaaaaaccc gctcggccga tggagcgcga
     1681 gcgggtttcg gaaggcgtgc cccgagcgcc cgggtatgag cgctcagtga cgatcaggtc
     1741 aatgcatcga atacgcgcgt gcggatttca tcgacggcac caagacccga gatccgccga
     1801 tactccggcg ccttcaggcc attgttgtcg ccatgttggg accacgtgtt gtagtactcg
     1861 atcaacggct tggtctgcgc gacatacacg tcgagccgct tcttcacggt ctcttccttg
     1921 tcgtcgtcgc gctggatcag cggctcgcca gtgacgtcat ccttgccttc ctgcttcggc
     1981 ggattgaact tgatgtgata agtacggcct gaggccgcgt gcacgcgacg cccgctcatg
     2041 cgcacgatga tgtcctcgaa cggcacgtcg atctcaagca cgtagtcgat agcaacaccg
     2101 gcttgcttca tggcgtcggc ttggggaagc gtgcgcggga aaccgtcgaa gagataaccg
     2161 ttcgtgcagt ccggttcctg cagacgttct ttcacgaggt tgatgatgag cgtgtccggc
     2221 acgagttcgc cggcgtccat gaagcgcttg gcttccacgc cgagtggcga acccgctttc
     2281 acggcggcgc gcagcatgtc gcccgtcgag atctgcggga tgccgaactt ttccttgatg
     2341 aaggtggcct gggtgccctt gccggcgccg ggggcgccca acaggatcaa acgcatggtg
     2401 atatctccga atcgaataga aaccgctgcg ctgcgaggct tattcttgcg tccggtcgct
     2461 gtggcacatc gctcggttga agccgcaaac gaggcgcgac gagccgaatt cgggagacgg
     2521 cgcggcacca gtcggacacg ggcgctcagg agcgttggcg ctgaccggaa ggctcgcgct
     2581 accggccgat tatgccatgc atcgtcacaa tggcgaccca aatcagaggc tggaaagccc
     2641 ggtaagtcgc gcgcagcggg ggttaacgcg agttgttcgg aagggggatg ccgcgctagg
     2701 acgaggtaaa aactagccga tttcgcaggg tgctgctgct tcggggcgcg gcggaaatgt
     2761 cagtgatcgg cggatgtccg accggatgac aacggaactg ccggaaacgt tgctgcagca
     2821 caaacgcggc ttatgcgtgg cttatgcgtg gcttgtcggc gatttatgcg tggcgatcgg
     2881 acgcagacct cgaaggtgga ttgcgg
//
LOCUS       DATGBK010000869         1632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_288368, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000869 DATGBK010000000
VERSION     DATGBK010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288368"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..537
                     /locus_tag="VKJ77_12160"
     CDS             <1..537
                     /locus_tag="VKJ77_12160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HMC46067.1"
                     /translation="FNMLSDSRDLDRLKLAIRFGAKTLADPSMAAHQSAIFPSSYSPR
                     VAKVAVPGAANAIQRGALSALLDWAGPWRKGLIHRLVTQGVSIDSLLADDHAITQFVT
                     RSVGGTWHPSGTCRMGSADDPAAVTDASGAVYGVQNLRVCDASLMPSIPCANTNVPTI
                     MIAERIADMIRSEARQAP"
     gene            complement(525..>1632)
                     /locus_tag="VKJ77_12165"
     CDS             complement(525..>1632)
                     /locus_tag="VKJ77_12165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC46068.1"
                     /translation="TRHLKELIRTCEAFTWQRSKGTTLITHEPIGVVALITPWNWPIN
                     QIVCKVAPAIAAGCTMVLKPSEVSPLNALLFAEILDAAGVPPGVFNLVNGDGPTVGAA
                     LCSHPDVDMVSFTGSTRAGIQIATLAAPTVKRVHQELGGKSANLILDDADLDAAVTAG
                     VNACFGNSGQSCNAPTRMFVPAARHEEAVAIARRAAEAHVVGPADAPGITLGPVVSEL
                     QFERIQRLIQTGVDEGARVVTGGPGRPEGLTRGYFVRPTVFAEVTPDMTIARDEIFGP
                     VLAILPYRDEEDAIAMANDSVFGLAAYVQSGDLEHARRVAFRLRAGSVHLNYPAWDAG
                     APFGGYKQSGNGREYGEWGLEAFLEVKGIVGYGA"
BASE COUNT          300 a          550 c          487 g          295 t
ORIGIN      
        1 ttcaacatgc tctccgactc acgcgacctg gaccgcctga agctcgccat tcgcttcggt
       61 gcaaagacgc tggcggaccc ctcaatggct gcgcaccaaa gcgccatctt tccatcgagt
      121 tattccccgc gagtcgcgaa agtcgctgta ccgggagccg ccaacgcgat tcagcgcggg
      181 gcgttgagcg cgctgctgga ttgggccggc ccgtggcgaa agggcttgat tcaccggctg
      241 gtgacgcaag gcgtttccat cgatagcctg ctcgccgacg accacgcaat aacgcagttc
      301 gtcacgcgtt cggttggtgg cacctggcac ccttcgggaa catgcaggat gggttccgcc
      361 gatgatccgg cagccgtcac ggacgcgtcg ggcgccgtct acggcgtgca gaacctgcgc
      421 gtctgcgatg cctcgctgat gccctccatt ccgtgcgcga acacgaacgt accgaccatc
      481 atgatcgccg agcggatcgc cgacatgatc cgctcggaag cgcgtcaggc gccgtaaccc
      541 acaatgccct tcacctcgag aaacgcctcg aggccccatt ctccgtattc gcggccattg
      601 cccgattgtt tgtagccgcc gaacggcgca cccgcatccc acgcgggata gttgagatgg
      661 acgctgcccg cacgcagccg gaacgccacc cgccgggcgt gttccaggtc gccggattga
      721 acgtaggccg cgaggccgaa cacgctgtcg ttcgccatgg cgatggcatc ttcctcgtcg
      781 cgatacggca ggatagcgag caccggaccg aagatttcat cgcgagcaat ggtcatgtca
      841 ggggtcacct cggcgaatac cgtcggcctg acgaagtagc cgcgcgtcag tccttcaggc
      901 cggcccggcc cgccggtcac cacgcgcgcg ccctcgtcca cgccggtttg aatcaaccgc
      961 tggatgcgct cgaactgcaa ttcgctgacc acgggtccca gcgttatgcc gggcgcatcg
     1021 gcgggaccga ccacatgggc ttcggccgcc cggcgtgcaa ttgccaccgc ttcctcatga
     1081 cgcgccgcgg gcacgaacat gcgcgtgggc gcgttgcacg actggccgct attgccgaaa
     1141 caggcattga cgcccgcggt caccgcagcg tcgagatcgg cgtcatcgag aatcaggttc
     1201 gccgatttac cgcccagttc ctgatgcact cgcttgactg tcggcgcggc cagcgtggcg
     1261 atctggatac ctgcgcgcgt agatcccgtg aacgacacca tgtccacatc gggatgactg
     1321 cataacgctg cgccaaccgt cgggccatcg ccgttcacaa gattgaagac gcccggcgga
     1381 acgcctgccg catccagtat ctcggcgaag agaagcgcgt tcaacggcga cacttcgcta
     1441 ggcttgagca ccatcgtgca acccgctgcg atggcaggcg caaccttgca gacaatctgg
     1501 ttgatcggcc agttccacgg cgtaatcaac gcgacaacgc caataggctc atgcgtaatg
     1561 agtgtcgtcc ctttgcttct ttgccaagtg aatgcctcgc aggttcgaat cagttccttc
     1621 aggtgccgcg tg
//
LOCUS       DATGBK010000870         1598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_265229, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000870 DATGBK010000000
VERSION     DATGBK010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265229"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..833)
                     /locus_tag="VKJ77_12170"
     CDS             complement(<1..833)
                     /locus_tag="VKJ77_12170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HMC46069.1"
                     /translation="MSKEVYVAGIGMTPFGKHLDTSVKQMTCKAVEDALADAGCEKGQ
                     LQGAFFGNSTQGHMDGQHMIRGELALRAMGVDGLPVINVENACASASTAFHLAVNYVK
                     AGAADIVLAVGAEKMFSTDKARTFSAFDGAWDVHDIENGRRRLLDMGKGIDPPEGSVS
                     EKPYSVFMDIYASMGRLHMREFGTTQRQIAAVSSKNHGHSVHNPLAQYRRAYSVEEVL
                     SAPPITYPLTLPMCSPISDGAAAAIVCSEAGLELLKGRRSRAIRVLASVLQTGSDRPA
                     AA"
     gene            complement(901..>1598)
                     /locus_tag="VKJ77_12175"
     CDS             complement(901..>1598)
                     /locus_tag="VKJ77_12175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006159515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5938 domain-containing protein"
                     /protein_id="HMC46070.1"
                     /translation="EGNLATEIALETPGIDTLDVIYLGDSEVSVASTMSFLRMCTKPQ
                     FFLRNKELVQWPWATPYQVHVPGEHMLLNALPWGGGGEPIWYESDPRVRNCQTLVSFR
                     NQERFHAVVGLLKKFEEECRHLDPARQEEITNEWGKAVTQTEPARENADVNRCTLSCQ
                     GRGNTNSVSVILRGNSPYAQTGVLGAEAVRRILRGQLHAVGFVSPAQAFGARNLLAAL
                     AEEGYLSYEVKSV"
BASE COUNT          293 a          538 c          443 g          324 t
ORIGIN      
        1 gcagcagcag gccggtcgct gccggtctgg agcacggaag ccagcacccg aattgctcgt
       61 gaacgccggc ctttgagcaa ctccagaccc gcttcgctgc atacgatcgc ggcggccgca
      121 ccgtcgctga tcggcgagca catcggcagc gtcagcggat acgtgatggg aggcgcgctg
      181 agtacttctt ccacggagta ggcccgccga tactgggcga gcggattgtg taccgagtgc
      241 ccgtgattct tggaggacac cgcggcaatc tgccgttgag tcgtgccgaa ttcgcgcatg
      301 tgcaggcgtc ccatcgacgc atagatatcc atgaacacgc tatagggctt ctccgacacg
      361 cttccttcgg gcggatcaat acccttgccc atgtcgagca gcctgcgtct gccgttctcg
      421 atatcgtgca cgtcccacgc accgtcgaac gcgctgaacg tacgcgcctt gtccgtcgaa
      481 aacatctttt cagcgcccac tgcgagcacg atgtccgcag cacctgcctt cacgtagttc
      541 accgccagat gaaacgccgt actggcgctc gcgcatgcgt tctccacgtt gatcacgggc
      601 aacccgtcaa cacccatcgc gcgcaacgca agctcgccgc gaatcatgtg ctggccgtcc
      661 atgtgcccct gcgtcgagtt gccgaagaac gcgccctgca gttgcccttt ctcgcaaccg
      721 gcatcggcga gcgcgtcctc cactgccttg caagtcatct gcttcacgct ggtgtccaga
      781 tgtttgccga agggcgtcat tccaataccc gcgacgtaca cttccttgct catggtcact
      841 tctccctcgc tcattggctg cgcaacgatg caacgtggcg cttatccgat ccacgcctgt
      901 tcaaacgctc ttcacttcgt agctcaagta gccttcttcg gccagagcgg cgaggagatt
      961 gcgcgctcca aaagcctgcg ccggcgaaac gaagccgacc gcatgcaact gccctcgcag
     1021 aatgcgacgt accgcttccg caccgagcac gccggtttgc gcgtagggtg aattgccgcg
     1081 cagaattacg ctgacagaat tcgtattgcc gcgcccttga catgacagcg tgcaacggtt
     1141 gacatcagcg ttctcgcggg cgggctcggt ttgcgtcacg gccttgcccc attcgtttgt
     1201 gatctcttcc tgcctggctg gatcgagatg ccggcactcc tcttcgaact tcttcagcaa
     1261 gccgacgacc gcatggaaac gctcctggtt tctgaacgac accagcgtct ggcaattgcg
     1321 cacgcgcgga tcgctctcgt accagatcgg ttcaccgccg ccaccccagg gcaacgcgtt
     1381 cagcagcatg tgttcaccgg gcacatggac ctgatacggc gtcgcccaag gccattgcac
     1441 cagctccttg ttgcgcagga agaactgcgg cttcgtgcac atccgcagaa acgacatcgt
     1501 cgacgcgacg ctgacttccg aatccccgag gtagatcacg tcgagcgtgt cgatgcccgg
     1561 ggtctccagc gcgatctcgg tcgccagatt gccttcgg
//
LOCUS       DATGBK010000871         3301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_56942, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000871 DATGBK010000000
VERSION     DATGBK010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56942"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..423)
                     /locus_tag="VKJ77_12180"
     CDS             complement(<1..423)
                     /locus_tag="VKJ77_12180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007876138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC46071.1"
                     /translation="MTKNKIVTEHTEEESVTERIVTQIRDKIICGDLPPGTALTEADL
                     TKAYDVSRNTLREALRQICREGLAVHYRHRGVVVRTLTRTDVRDIFRVRRTLELQAIA
                     LPAKPDPAVLHAMAAACDAAAQAASQEDWRSVGTHSLRF"
     gene            complement(471..1982)
                     /locus_tag="VKJ77_12185"
     CDS             complement(471..1982)
                     /locus_tag="VKJ77_12185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006396887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HMC46072.1"
                     /translation="MIFDWHYALSLLADKAFWSASWRVVELSIATWVIGIVAGFLLAL
                     GKQSRIATLRVACSAYIWLFRSLPLLVLLIFVYNLPQVFPASSVVLADPFWAGLIALS
                     ISEAAYIAEIHRGGLLSIGRGQFEAGRALGLRYLGLQRLVVVPQAFRVALPSLVNEYI
                     TIVKLTSLVSVISLAEILLVGERLYTQNFKVLETMLAVSFYYVLIVTVVGYALKLLEQ
                     RLDVARREPAAFGPAEPAAPATAPAPQVEKTGRVALEAVGLRKRYGVHEVLKGVDLKV
                     QAGEVISVIGPSGSGKTSLIRTLNGLEALDDGEIVLHGKLFQWGANKARRAVSHREHM
                     RGIVDIGMVFQSFNLFPHRSVLDNVTLAPRYHDRGSKTALRALGMEMLSKVGMAAHAH
                     KYPHQLSGGQQQRVAIARALAMKPSIVLFDEPTSALDPELVAEVLKVIEQLAREGMTL
                     VIVTHEINFAFRISDRIIFLENGSIVADAAPRVMTAFDKDSRVAHFLKDLQIA"
     gene            complement(2062..2925)
                     /locus_tag="VKJ77_12190"
     CDS             complement(2062..2925)
                     /locus_tag="VKJ77_12190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006410350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46073.1"
                     /translation="MHAYRPSFSPRRALLAGLTGLMLLVLQGAANAATEAPPTIASGT
                     LTIGSDLTYPPYAFMDGDTPAGLDPDFMKTLASHLQLKPQFVDTRFANLILGINAKRI
                     DIIASALYVTPERAKQIDFVPYFKTGGSLLALTGSGFTPATPEALCGKRVSSIKGASW
                     IPKLAKVSQDTCATKGLAAIDVREFETSPQASQALLAHAVDAQFEDSAVAKMTVDKMG
                     GRLAITSTTPLFPVVVGLGVAKSDPALLAAVKGALDTMKHDGEYATLLKRYNVAEPTG
                     AEIAQALGAAN"
BASE COUNT          659 a          972 c         1051 g          619 t
ORIGIN      
        1 aaagcggagg ctatgtgtgc ccacgcttcg ccagtcttct tgcgacgcgg cttgtgcagc
       61 ggcatcgcag gcggcggcca tggcgtgcag caccgccggg tcgggctttg ccggcagcgc
      121 aatcgcctgc agttccaggg tgcggcggac ccggaagata tcgcgcacgt cggtacgtgt
      181 cagtgtgcgc accaccacgc cgcgatgccg gtagtgcacg gccaatccct cacggcaaat
      241 ctgccgcagc gcttcgcgaa gcgtattgcg cgagacgtcg tacgccttcg tgagatcggc
      301 ttcggtgagc gcagtgccgg gaggcaggtc gccgcagatg atcttgtcgc gaatctgcgt
      361 gacgatgcgt tcggtcacgg actcttcttc ggtgtgctcg gtcacgatct tgttcttggt
      421 cacggcgggg ttggaaacag acacagaaac ggacacggaa acggctcggg tcatgcgatc
      481 tggaggtctt taagaaagtg cgcgacgcgg gaatccttgt cgaacgcggt catgacgcga
      541 ggcgcggcgt ccgccacgat cgagccattc tccaggaaga ttatccgatc cgagatgcgg
      601 aatgcaaaat tgatctcgtg cgtgacgatc accagggtca tcccctcgcg cgcaagctgt
      661 tcgatgacct tcaggacctc ggccaccagc tcagggtcga gcgcggaggt cggttcgtcg
      721 aagaggacaa tcgatggttt catggccagc gcccgcgcaa tggccacccg ctgttgctgg
      781 ccgccggaga gctggtgcgg atacttgtgc gcatgagcgg ccattccgac ctttgaaagc
      841 atctccatgc cgagcgcgcg cagcgcagtc ttcgagcctc gatcgtgata gcgcggcgcc
      901 agcgtgacgt tgtcgagcac gctgcgatgc gggaagagat taaaactctg gaacaccatg
      961 ccgatatcga caatgccacg catgtgctcg cgatgggaca cggctcgccg cgccttgttc
     1021 gcgccccact ggaacagctt gccgtggagc acgatctcgc cgtcgtcgag tgcctccaga
     1081 ccattgagcg tgcggatcag cgaagttttg cccgaccccg acggcccgat caccgagatg
     1141 acttcacctg cctgcacctt gaggtcgacg cctttcagca cttcgtggac accgtaacgt
     1201 tttcgcaagc caaccgcttc aagcgccacg cggccagtct tttcgacctg cggcgccggt
     1261 gcggtggcgg gcgcggccgg ctctgcggga ccgaacgccg cgggctccct gcgcgcaacg
     1321 tccaggcgct gttcgagcag tttcagcgcg tacccgacca cggtgacgat caacacgtag
     1381 tagaacgata cggcgagcat cgtctccagg accttgaagt tctgcgtgta gaggcgctca
     1441 cccaccagca atatttcggc gagcgagatc acggacacga gcgaggtgag cttgacgatt
     1501 gtgatgtatt cgttgacgag cgacggcaag gccacccgaa acgcctgcgg caccaccacc
     1561 agcctttgca ggccaaggta ccgcaatccc agcgcgcgac ccgcctcgaa ctggccccgg
     1621 cctatggaaa gcaagccgcc ccggtgaatc tcagctatgt aagctgcctc actgatcgac
     1681 aacgcaatca ggcccgccca gaagggatcg gcgagcacta cgctcgatgc cgggaacact
     1741 tggggcaagt tgtacacgaa gatcagcagc accagcagcg gtaagctgcg aaacagccag
     1801 atgtatgccg agcatgccac gcgtaatgtt gcgatacgag actgcttgcc gagcgccagc
     1861 aggaacccgg ccacaatacc aatcacccat gttgctatgc tgagttcgac cacgcgccag
     1921 gatgcgctcc agaacgcctt gtcggcgagc aacgacaggg cgtagtgcca gtcaaaaatc
     1981 attcatcttt ctccgcaagg caacgcggcg actcaaacgt gccgcgtggt ccgtgactgg
     2041 tgtgggattg gtatatgacg ctcagttggc cgcgccgagt gcttgcgcga tctccgcgcc
     2101 ggtcggttcg gcgacgttgt agcgcttgag cagcgttgcg tactcgccgt catgcttcat
     2161 cgtgtcgagc gcgcccttca ccgccgcgag cagcgccggg tcgctcttgg cgacacccag
     2221 gcctacaacc accgggaaaa gcggcgtagt cgatgtgatg gcaaggcgcc cgcccatttt
     2281 gtcgacggtc attttcgcga ccgcagagtc ttcgaactgc gcatcgacag cgtgagccag
     2341 cagcgcctgc gaggcttgcg gcgaggtctc gaactcgcgt acatcgatcg ctgcaaggcc
     2401 cttcgttgca caggtgtcct gactgacctt cgccagcttg ggaatccacg aggcgccctt
     2461 gatcgaactg acgcgtttgc cgcacagggc ttcgggcgtc gcgggcgtga agccgctgcc
     2521 ggtcagcgcg aggagcgagc cgccggtctt gaagtagggc acgaaatcga tttgtttcgc
     2581 gcgctcgggc gtgacataga gcgcggacgc aatgatgtcg atgcgcttcg cgttgatccc
     2641 caggatcagg ttggcgaaac gcgtgtcgac gaactgcggc ttgagttgca ggtgcgacgc
     2701 gagcgtcttc atgaaatcag gatcgagtcc ggcgggcgtg tcgccgtcca tgaacgcgta
     2761 cggcggatag gtcaggtcgg aaccaatggt tagcgtgccc gaggcgatcg tgggcggtgc
     2821 ctccgtagcg gcgttggccg caccctgcag gaccagcagc atcagacctg tgagcccggc
     2881 aagcagggcg cgacgcggcg agaaggacgg acgataggcg tgcatggacg ttccctttct
     2941 gaagaaagga tcactcttgg cgatccaaat tgttgaacaa tgttaataat attgttcaac
     3001 aaaataggga tgtcaagact ttatgaaacg tcggatggag gcatctttga tcgcccgcga
     3061 agtgccggta aaagcagaaa atcgtgcgtt caacgccact gtggatcgtg ttagttgcga
     3121 cgaatagtgg tttggagctt ttaatgagga cgcgccggat aacaggcagc ggacggccat
     3181 ggccgagtat gaaaggggtt ggtcaggaaa tttgcgcgac ggcggaagcg gcccgttatt
     3241 cccgtcgtga cgggaccagt aatcgggcgg atttggtccg ctactgtctt ggcggaaaat
     3301 a
//
LOCUS       DATGBK010000872         2766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_288379, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000872 DATGBK010000000
VERSION     DATGBK010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288379"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..671
                     /locus_tag="VKJ77_12195"
     CDS             <1..671
                     /locus_tag="VKJ77_12195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011353430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
                     /protein_id="HMC46074.1"
                     /translation="ERIHQGNIAEELLVAGVTLLDPARIDVRGTLTCGRDVSIDVNCV
                     FEGDVTLADNVIVGPNCVIRNASIGAGTRIDAFTHIEGGTTGANVVLGPYARLRPGAV
                     LGDEAHVGNFVEVKNAVFGPGSKANHLSYIGDSDIGARVNIGAGTITCNYDGANKFRT
                     VIGDDVFVGSDTQLVAPVRVGRGASIAAGTTVWKDVAEDQLVLNEKTQVSKSGYVRPT
                     KKKA"
     gene            771..2588
                     /gene="glmS"
                     /locus_tag="VKJ77_12200"
     CDS             771..2588
                     /gene="glmS"
                     /locus_tag="VKJ77_12200"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011000145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HMC46075.1"
                     /translation="MCGIVGAVAQRNIVSVLVEGLRRLEYRGYDSCGVAVIADGEPKR
                     ARSVARVADLADQVRDTHLEGVTGIAHTRWATHGAPVTDNAHPIFSRNELALVHNGII
                     ENYETLRTMLRGKGYEFVSQTDTEVIAHLIHSMYRGDLFQTVRDAVKELHGAYAIAVI
                     HKDQPHTVVGARQGSPLVVGVGDGENFLASDALALAGSTDRFAFLDEGDVVEITLDGV
                     KIVDRDGMPAEREVRVVAAYGGAVELGPYRHFMQKEIFEQPRAITDTIPQTNRFSAEL
                     FGADAAEVFADIDSVLILACGTSSYAGMTAKYWLESVAKIPTQVEIASEYRYRESVPN
                     PRALVVVISQSGETADTLAALKHAKGLGHKHTLAVCNVASSAMVRLTKLAFLTHAGTE
                     IGVASTKAFTTQLVGMFVLAATLGTLRGHVSEKQETDYLTQLRHLPAALNSVLALEPQ
                     IIALSEEFSRKENALFLGRGLHYPIALEGALKLKEISYIHAEAYPAGELKHGPLALVT
                     EAMPVVTVAPNDALLEKLKSNMQEVRARGGELYVFADSDTRIVSEDGIHVIRMPEHYG
                     LLSPILHVVPLQLLAYHTACARGTDVDKPRNLAKSVTVE"
BASE COUNT          554 a          671 c          942 g          599 t
ORIGIN      
        1 ttgaacggat tcatcaaggc aatattgccg aggagttgct cgttgccggc gtgacgttac
       61 tggaccccgc gcgaatcgat gtgcgcggca cgctgacctg cggacgcgat gtgtctatcg
      121 acgtgaattg cgtcttcgaa ggcgatgtga cgctggcgga taacgtgatc gttggaccga
      181 actgcgtgat tcgcaatgca tcgattggcg cgggcacgcg cattgatgcg ttcacgcata
      241 tcgagggcgg tacgaccggg gcgaacgtcg tgctcggacc gtatgcgcgc ctgcgaccgg
      301 gcgcggtgct cggcgacgaa gcgcacgtgg gcaacttcgt cgaagtgaag aacgcggtgt
      361 tcggacctgg gtcgaaggcg aaccatttga gctatatcgg cgactcggat attggggcgc
      421 gagtgaatat cggcgcgggc acgatcacct gtaactacga tggcgccaac aaatttcgca
      481 cggtgatcgg ggacgatgtg ttcgtcggct ccgataccca actggttgcg ccggtgcgcg
      541 tggggcgggg tgcgtccatc gcggccggga cgaccgtatg gaaggatgtc gcggaagacc
      601 agctcgtgct gaacgaaaaa actcaggtca gtaagagcgg ttacgtacgg ccgacaaaaa
      661 agaaagcttg aacaataacg acggctctgt catttgcttg agcgcgcgcc ttggtggcga
      721 gcgccgggcg ttttcgagcg attcaaaaac aatttgtaga ggacgacgcc atgtgcggaa
      781 ttgtcggcgc ggttgcgcaa cgtaacatcg tatcggtgct ggtcgaaggt ctgcggcggc
      841 ttgaatatcg cggctacgat tcctgcggcg tagccgtgat tgccgatggc gaaccgaagc
      901 gcgcgcgcag cgttgcacgc gtggccgatc tcgccgatca ggtccgcgat acacatctgg
      961 aaggcgtaac cggcattgcg cacacgcgct gggcgacgca cggcgcgccc gtgaccgaca
     1021 acgcgcatcc catcttttcg cgtaatgaac tggcgctggt gcacaacggg atcatcgaga
     1081 attacgagac cttgcggacc atgctgcgcg ggaaaggcta cgagtttgtc tcgcagaccg
     1141 ataccgaagt catcgcgcat ttgatccaca gcatgtatcg cggcgatctg ttccagaccg
     1201 tacgcgacgc cgtgaaggaa ttgcatggcg cgtacgccat tgccgtgatc cacaaggatc
     1261 agccgcatac cgtggtcggt gcgcgacagg ggtcgccgct ggtggttgga gtgggcgacg
     1321 gcgagaattt cctcgcctct gatgcgctcg cgcttgcggg cagcaccgat cgtttcgcgt
     1381 tcctcgatga aggcgatgtg gtcgagatca cgctggacgg cgtgaagatt gtcgatcgcg
     1441 atggaatgcc cgccgagcgc gaagtgcgtg tggtcgcggc gtatggcggc gcggttgagc
     1501 ttgggccgta tcggcacttt atgcagaagg aaatcttcga gcaaccgcgt gcgatcaccg
     1561 atacgattcc gcaaaccaat cgcttctccg ccgagttgtt cggggcggac gcggctgagg
     1621 ttttcgccga tatcgacagt gtgcttatcc tggcgtgtgg cacgagttcg tacgcgggga
     1681 tgacggcgaa gtattggctt gaatcggttg cgaagattcc gacgcaagtg gagattgcga
     1741 gtgagtaccg gtatcgcgag tccgtgccga atccacgggc tttggtcgtg gtgatttcgc
     1801 agtcgggcga gaccgccgat acgctggccg ccttgaagca tgcgaagggg ctcgggcata
     1861 agcacacgct ggcggtttgc aatgtggctt ccagcgcgat ggttcggttg acgaagctcg
     1921 cgtttctgac gcatgcgggg actgagattg gggtggcttc gactaaggca tttacgacgc
     1981 agttagtcgg gatgtttgta ttggctgcca cgcttgggac cctgcgtggg catgtgagtg
     2041 agaagcagga aacggactat ctgacgcagt tgcggcattt gccggcggcg ctgaatagcg
     2101 tgctggcgct ggagccgcag atcatcgctt tgtcagaaga gttttcacgc aaggagaatg
     2161 cgctgtttct cgggcgtggg ctgcattatc cgatcgcgct tgaaggtgcg ttgaagctta
     2221 aggagatttc gtatattcat gcggaagctt atccggctgg ggagttgaag catgggccgt
     2281 tggcgctggt gactgaggcg atgccggtgg tgacggtggc gcctaatgac gcgctgctgg
     2341 agaagctgaa gtcgaatatg caagaggtca gggcgcgagg gggagagctt tatgtcttcg
     2401 cggattccga tactcggatt gttagcgagg atgggattca cgttataagg atgcctgagc
     2461 actatgggtt gctgtcgccc attcttcatg tcgtgccgct gcagttgctg gcttatcaca
     2521 cggcttgtgc gagggggacg gatgtggata agcctaggaa tttggcgaag agcgtgacgg
     2581 tggagtgagg gggtttttgt ttttagagag caattggtcc gtgacaataa agttgcgaac
     2641 taaaagtggg atcgaaacaa taaagttgcg aagtgatatg gagcatcttt caaatcgtgt
     2701 gggacgtcag cgatcgttgc cccctcgaaa ttgacgctgt tttcaccatg acgaattgca
     2761 aaggta
//
LOCUS       DATGBK010000873         4255 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334376, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000873 DATGBK010000000
VERSION     DATGBK010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4255
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334376"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..889)
                     /locus_tag="VKJ77_12205"
     CDS             complement(<1..889)
                     /locus_tag="VKJ77_12205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010927399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase"
                     /protein_id="HMC46076.1"
                     /translation="MPHAYLPSDLDDALLIGRVWRPAPINGPSVIVVRSGEVVDITST
                     VATTADLFDRDDAVEIARHASGESLGSVDALISASLASSTHAMHLLAPCDVQAVKACG
                     VTFAVSLLERVIEEHAGGDASKAQETRSMINELIGADLSKIKPGSEAAEKLKAELERR
                     GAWSQYMEVGIGPDAEVFSKSQPMSSVGFGADVGLYPTSKWNNPEPEIVLAVNSAGTI
                     VGATLGNDVNLRDIEGRSALLLGRAKDNNGSCSIGPFVRLFDGTFTLDTVREASVSLR
                     IEGADDGFVLDGISHMREIS"
     gene            complement(943..2760)
                     /locus_tag="VKJ77_12210"
     CDS             complement(943..2760)
                     /locus_tag="VKJ77_12210"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IlvD/Edd family dehydratase"
                     /protein_id="HMC46077.1"
                     /translation="MNPSNPTNTRDTDDTATPRLRSRRWFDDPSDPGMTALYLERYMN
                     YGITREELQSGKPIIGIAQTGSDLAPCNRHHLELASRVRDGIRDAGGIPLEFPVHPIQ
                     ETGKRPTAALDRNLAYLGLVEILHGYPIDGVVLTTGCDKTTPACLMAAATVNIPAIVL
                     SGGPMLDGWYHGKLAGSGTVIWDARKRLSAGEIDYPGFMDMVASSAPSVGHCNTMGTA
                     LSMNSLAEALGMSLPGCAAIPGPHRERGWMAYATGKRIVGMVAENLRPSDIMTKRAFE
                     NAVVAAAALGASSNCPIHMIAIARHMGVDHTLEDWQRLGPEVPLLVDCQPAGRFLGEA
                     FHRAGGVPAVMKELLDAGRLNSDVRTVTGRTLGEDLATVPTPDREVIRAYANPLKESA
                     GYVVLSGNLFDSAVMKVSVIDDAFRKRFLADPDHPDVFEGKVVVFEGPEDYHARIEDP
                     ETGVDERSILVIRNCGPIGFPGGAEVVNMQPPAALLKRGIDTLPTLGDGRQSGTSASP
                     SILNVSPEAAVGGGLALLLSGDKIRIDLKTRKVDLMIPDAELAQRRAAWKPPVLKNMT
                     PWEEIYRSMVGQQGSGACLEPATLYLNIVETRGESRHNH"
     gene            3476..4219
                     /locus_tag="VKJ77_12215"
     CDS             3476..4219
                     /locus_tag="VKJ77_12215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012352590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HMC46078.1"
                     /translation="MTKALTLTQQVAQQMTGDIRDGVYPVGTKLPSGKDLATRFGVSQ
                     SVIREVTERLRSNGLIDSRQGAGCTVKARTETGGFRVPHAVGADRADLADVYELRLDL
                     EGAAAALAAVRRTEADIDALAAILKSLADNLYTPDHAVELDIAFHVAIADATHNRYYV
                     DLLQYLNLQIRQAVQTARTHSLARQRLPDEVHREHVRVFEAIRAGDPVAARIAATSHL
                     QNAAARLNLTIPGRDALIGAANLSSLTNT"
BASE COUNT          811 a         1323 c         1305 g          816 t
ORIGIN      
        1 ggctgatctc gcgcatgtgg ctgatgccgt ccagcacaaa accatcgtcc gcgccttcaa
       61 tgcgcagcga tacgctcgcc tcgcgcacgg tgtcgagcgt gaaggttccg tcaaacagac
      121 gcacgaacgg accgatcgag catgaaccgt tgttgtcttt cgctcggccg agcagcaaag
      181 cggagcggcc ttcaatatcg cgcaggttga cgtcgttgcc gagcgtcgca cctacgatcg
      241 tgcccgcgct gttcactgcc agcacgattt ccggttcggg gttgttccac ttcgaagtcg
      301 gatacaaacc cacgtccgca ccgaatccaa ccgaggacat gggttgcgat ttggaaaata
      361 cttcggcatc cggaccaatt ccgacttcca tgtattgcga ccacgcgccg cgccgctcga
      421 gttcggcctt caacttttct gccgcttcgg aaccgggttt tatcttcgat aaatccgcac
      481 cgatcaactc gttgatcatc gagcgggttt cctgcgcctt gcttgcatcg ccgcccgcgt
      541 gttcttcgat cacgcgttcg agcaggctca ccgcgaacgt cacaccacac gccttgaccg
      601 cttgcacgtc gcacggtgcg agcaaatgca ttgcatgggt ggatgaagcg agcgacgcgc
      661 ttatcagcgc atcgactgaa cctagcgatt cgcccgaagc gtggcgtgcg atttctacgg
      721 catcgtcgcg atcgaaaaga tcagcggtgg tggcgaccgt cgatgtgatg tcgacgactt
      781 cgccgctccg cacgacgatc accgacggtc cgttgatagg cgcgggccgc cagacgcggc
      841 cgatcagcag cgcgtcgtca aggtcggagg ggaggtaagc gtgaggcatg tgtgtgtctc
      901 cagaaggttt ccagaaggat gatggccagg cgtcggtgcg ccttagtggt tgtggcgcga
      961 ttcgccgcgc gtctctacga tgttcaggta cagcgtggcc ggttcgaggc atgcgccgct
     1021 gccttgctgc ccgaccatgc tccggtagat ctcttcccac ggtgtcatgt tcttcagcac
     1081 aggcggcttc caggccgcgc ggcgttgcgc gagttcggca tcggggatca tcaggtcgac
     1141 cttgcgcgtt ttcaggtcga tgcggatctt atcgcccgat agcagcaacg caagcccgcc
     1201 gccaacggcc gcttccggcg acacgttgag aatcgacgga ctcgccgacg taccgctctg
     1261 acggccatcg cccagagtcg gcaaggtatc gataccgcgc ttgagcagcg ctgccggcgg
     1321 ctgcatgttg accacttcgg cgccaccggg aaagccgatc ggaccgcaat tgcggatcac
     1381 gaggatcgaa cgttcgtcga cgccggtctc cgggtcttca atgcgcgcgt gatagtcctc
     1441 cgggccttcg aacacgacca ccttgccctc gaacacatcg ggatgatccg ggtcggcgag
     1501 gaagcgcttg cggaacgcgt cgtcgattac gctgaccttc atgacggcgc tgtcgaacag
     1561 gttgcccgac agcacgacgt atccggccga ctctttcaac gggttcgcgt atgcacgaat
     1621 cacctcgcga tcgggcgtgg gaacggtggc caggtcttcg cccaacgtgc ggccggtgac
     1681 cgtgcgtacg tcggagttca aacggcctgc atcgagtagt tccttcatca cggccggcac
     1741 gccgcctgcc cgatgaaatg cttcgccaag gaagcgtccg gcgggctggc agtccaccag
     1801 caacgggacc tcgggaccga gccgttgcca gtcttccagc gtgtgatcga cacccatgtg
     1861 acgcgcgatg gcgatcatgt gaatcggaca attcgatgag gcgccgagcg cggccgccgc
     1921 gaccacggcg ttctcaaacg cgcgcttggt catgatgtcc gacgggcgca gattctccgc
     1981 caccatgccg acgatacgct tgccagttgc atacgccatc catccacgct cgcgatgcgg
     2041 cccgggaatc gccgcgcaac cgggcagcga catgccgagc gcttcagcaa gcgaattcat
     2101 ggagagcgcc gtgcccatcg tgttgcaatg cccgaccgag ggcgcggacg aagccaccat
     2161 gtccatgaaa ccgggatagt cgatctcgcc ggcggacaag cgtttgcgag cgtcccagat
     2221 caccgtgccg gagccggcca gcttgccgtg ataccagccg tcgagcatcg gtccgcccga
     2281 cagcacaatg gcgggaatgt tgaccgtagc ggcggccatc aggcacgcgg gcgtggtctt
     2341 gtcgcagccg gtggtgagca cgacaccatc gatcggatag ccatgcagga tttcaacgag
     2401 gccaagataa gcgaggttgc gatcgagcgc agcagtaggg cgcttgccgg tttcctggat
     2461 cggatgaaca ggaaattcga gcggaatgcc gcccgcatca cggatgccgt cgcgtacgcg
     2521 gctcgcaagc tcgagatgat ggcggttgca aggagcgaga tccgaacccg tctgcgcgat
     2581 gccgatgatc ggcttgcctg actgcagctc ttcgcgcgtg atgccgtagt tcatgtagcg
     2641 ctcgagatag agcgcggtca tgccggggtc ggagggatcg tcgaaccagc ggcggctgcg
     2701 caggcggggc gttgcagtgt cgtcggtgtc gcgtgtattg gtggggttgg atgggttcat
     2761 aagcgtgcat gtctcaggtt cgttttgtag gggaacggct gggcggctta gcgcgtgtat
     2821 tcggtatgca gcggtttgca gttgaagggc gcctgtggat tgtctcgaac gaggcaggcc
     2881 attgccgtac gggtttctac tgtcgcgctg gatccgtgcg gttgcagcac catgttatgg
     2941 agctcggcaa agcccggatc aatcgacggt tcattccaga atacatcgag tgctgcgcgt
     3001 cgacgcggcg gccgtggatt tgttaccggt aacatatcaa acgcataccg ggatgtccag
     3061 aacaaaagag gcacgatgat gagttgggtt tctgcggaat tgtggcgtga gcttacgggc
     3121 gcgctgcgag agaccttagg taacctgatc aatatcaggc actttctcaa agagatagat
     3181 actggccaga tgccgctctc agacctccgc cgttaccgct ggcaccggca catcgcgcgg
     3241 tgttgtcacg cgtagcgagc ggcacacggt aggcaagtac ggttttaagc cggtgcctgc
     3301 aaaccttttc gtggcagcga caatcgtatc cgatctatcc gggggccgcc gccgtctggt
     3361 cgacctctcg cgcacggccc actgcagaat taccactccc cattcactcg tcaaaagttt
     3421 tcatataaca tgcaaaccag ataacctgaa acgatcgatt gaagcccaga cccccgtgac
     3481 aaaagccctg acccttaccc agcaagtcgc ccagcaaatg accggcgata tccgtgatgg
     3541 ggtttacccg gtgggcacca agctcccctc cggcaaggat ctggccacgc gtttcggcgt
     3601 gagccagtca gttatccgtg aagtgacgga gcgcttgcgt tcgaatgggc tgatcgacag
     3661 ccgccagggc gcgggttgta ccgtgaaggc tcgtacggaa acaggcggtt tccgcgtccc
     3721 ccacgcagtc ggcgcggacc gggcggacct ggcggacgtc tacgagctgc ggctcgatct
     3781 ggaaggcgca gcagcggcgc tggctgccgt gcgccggact gaagccgaca tcgacgcact
     3841 ggcggccatt ctcaaatcgc tcgccgataa cctctacacc ccggaccacg ccgtggagct
     3901 ggacatcgcg ttccatgtcg cgatcgccga tgccacccac aaccgctact acgtcgatct
     3961 gctccagtac ctcaacctcc agatccgcca ggccgtgcag acggcccgta cgcattcgct
     4021 tgcgcgtcag cgcctgcctg acgaagtcca ccgtgaacac gtccgcgtat tcgaagcgat
     4081 ccgtgctggc gatcctgtgg ccgcgcgcat cgctgcaact tcgcatctgc agaacgcggc
     4141 cgcccgcttg aacctcacga ttcctggccg cgacgcactc atcggcgcag caaacctcag
     4201 ctccctgacg aacacgtgaa cgactaaatg accgatacct ccttccccca ccgtc
//
LOCUS       DATGBK010000874         2463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334381, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000874 DATGBK010000000
VERSION     DATGBK010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334381"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..905
                     /locus_tag="VKJ77_12220"
     CDS             <1..905
                     /locus_tag="VKJ77_12220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010100492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HMC46079.1"
                     /translation="RRALLARKGWDFDNDGLTGAPEVRVVVSELVHITVKKALRLLGF
                     GMNRIVFAPVNQHGQVDPERLPALDDMTILCLQAGEVNTGEFDPFDELIPRANTAGAW
                     VHVDAAFGMWARASSHAELTKGIEGADSWTTDAHKWLNTPYDCAMAICRDSEALAAAM
                     NSDAVYLSGARDAQKNLTLEFSRRARGIPVWAALRSLGREGVASMVNKHCALARRIAL
                     GLEQAGFDILNRVTLNQILVRAHTDELTVAAREAVQASGEAWFGATVWQGRPAFRISV
                     SSWRTTEHEADALVQLLTGIAKSH"
     gene            complement(1090..1839)
                     /locus_tag="VKJ77_12225"
     CDS             complement(1090..1839)
                     /locus_tag="VKJ77_12225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018005585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HMC46080.1"
                     /translation="MTSADTARVAAIALTFLMAGAVKGVTGMGLPTVAMGVLGTLMLP
                     AEAACLLILPSFITNVWQLLAGPRLGALVRRLWLMMAGIVIGTVAAASFIAGSGGAWA
                     VTGLGAALTLYAASGLLSLRFSVPARHERRLSPFIGLVTGLVTGGTGVFVIPAVPYLQ
                     ALDLKKEDLVQALGLSFTVSTVALAIGLARASAFTTADLTSSLLAVVPALCGMWIGQH
                     IRGHISPATFRRWFFICMLALGLQLLLRHLI"
     gene            1961..>2463
                     /locus_tag="VKJ77_12230"
     CDS             1961..>2463
                     /locus_tag="VKJ77_12230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46081.1"
                     /translation="MRFDLTDLRLFLSILETGSITHGAAQANMSLPSASARLRGMEEA
                     LGMPLLERGRRGVESTPAGDTLAHHARLVLGQIARMQGELGEHSEARRTRVRVWANTA
                     AVTEFLPRPLGGFLRNNPGVHIDLKERQSTETVKAVLNGSAEIGIVSDAVEHGMLQTF
                     PFATDKLV"
BASE COUNT          510 a          717 c          801 g          435 t
ORIGIN      
        1 ctcgtcgcgc gctgcttgca cggaagggtt gggacttcga caacgacggc ctgacaggtg
       61 ctcccgaggt cagggtcgtc gtgtccgagc ttgtgcatat caccgtgaaa aaagcgcttc
      121 gtctgcttgg tttcggcatg aacaggatag tgtttgcgcc ggtcaatcaa catgggcagg
      181 tggacccgga acgtttgccg gcgctcgatg acatgaccat cctgtgtttg caggcgggtg
      241 aggtcaacac gggcgaattc gatccgttcg acgaactcat tccccgggcc aacaccgccg
      301 gcgcctgggt tcatgttgac gctgcgttcg gcatgtgggc acgtgcgtcc tcccacgcgg
      361 aattgacgaa agggatagaa ggcgccgata gctggactac cgacgcccat aaatggctga
      421 acacacccta cgactgcgcg atggcaatct gccgcgatag cgaagcgctc gccgcagcaa
      481 tgaacagcga tgcggtgtat ttgagcgggg cgagagatgc gcagaaaaac ctgacgctcg
      541 agttctcgcg acgggctcgc ggcataccgg tgtgggccgc gttgcgctcg ttagggcgtg
      601 aaggcgtggc gtcgatggtg aataagcact gtgcgctggc gcgtcggatt gcactgggtc
      661 ttgagcaagc gggattcgac atactgaacc gggtcacgct gaaccagatc ctcgtccgcg
      721 cccataccga tgaactcacg gttgccgccc gtgaagcggt gcaggcatcc ggcgaagcct
      781 ggtttggtgc gaccgtctgg caggggcggc cggcattcag gatcagcgtg tcgtcctggc
      841 ggacaacgga acacgaagcg gacgcgctcg ttcaattgtt gaccggcatt gcaaagtcac
      901 actaaccatg gcggctgtca tcgcgctatc cggcgcggtt tgccgaggct agcggtgacg
      961 cttgagcagc gcccgaaggt tgatcgccag actggccaat atcgccagcg cgcccaacgt
     1021 ttccagtaat ggcgagagca tcgcgtgaga tctcccaaag ggcgagccgg tggcttcccg
     1081 actcaacgct taaatcaaat gccgtaacag caattgaaga ccgagcgcca gcatgcagat
     1141 aaagaaccat cggcggaagg tcgcggggct gatatggcca cgtatgtgtt ggccgatcca
     1201 catgccgcac agggcaggga cgacggcgag cagcgaactg gtgagatcgg cggttgtgaa
     1261 tgcgcttgcg cgggcaagcc cgattgccaa ggccacggtc gatacggtaa atgatagtcc
     1321 gagggcctgg acgaggtctt ctttttttag atcgagcgct tgaagatacg ggaccgcggg
     1381 tatgacgaag acgcccgtgc ctccggtgac cagaccggtc accaggccaa tgaagggcga
     1441 cagccgccgc tcatgccgtg ccggcacgga gaagcgcaag gacagcagcc cggaggccgc
     1501 gtaaagcgtc agtgcggcgc caagcccggt tacagcccac gccccgccgc tgccggcaat
     1561 gaacgaagcc gcagccacgg taccgatcac aattcccgcc atcatcaacc acaagcgcct
     1621 gacaagcgca ccgaggcgtg gacctgcaag aagctgccac acgttggtga tgaacgacgg
     1681 caggatcagc aggcaagccg cctcggcggg cagcatgagc gtgccgagca cacccattgc
     1741 cacggtcggc agtcccatgc ccgtgacgcc ctttacagcg ccggccatca ggaaggtcaa
     1801 cgcaatggca gcgacgcgcg cggtgtcagc agaggtcatt gaagtttcgc aggaaaatga
     1861 tttgccctga ttctccccgg attcgcaacg accacaatgc ggaagatgcg tactgtgcct
     1921 tagggtataa ctaaggctga tcaaccaagt ttcttcggcc atgcgcttcg acctgacaga
     1981 cctgcgcctt ttcctgtcca tcctcgaaac aggcagcatc acgcacggcg cggctcaggc
     2041 aaacatgtcc ctgccgtccg ccagtgcgcg tttgcgcggc atggaggagg cattggggat
     2101 gccgctgctg gagcgaggcc gccgtggcgt cgagtccacg ccggcagggg acacgctggc
     2161 gcaccacgcg cgcctggtac tcggtcagat cgcgcgaatg cagggtgagt tgggggagca
     2221 ctcagaggct cgcagaacgc gtgtgcgggt gtgggcgaat accgcggccg tgacggaatt
     2281 cctgccccgt cctctgggcg gatttcttcg gaacaatcct ggcgtgcaca tcgatttgaa
     2341 ggagcggcag agtaccgaga cggtcaaggc ggtccttaac ggttccgcgg agataggcat
     2401 tgtttccgat gcggtcgagc acgggatgtt gcagacgttt ccatttgcca ccgacaagct
     2461 ggt
//
LOCUS       DATGBK010000875         1542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334382, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000875 DATGBK010000000
VERSION     DATGBK010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334382"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..890
                     /locus_tag="VKJ77_12235"
     CDS             <1..890
                     /locus_tag="VKJ77_12235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011297837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HMC46082.1"
                     /translation="GLSYGQLREENPRLIYCSITGFGQSGPYAPRPGYDFVFQGMGGL
                     MSITGERDELPGGGPMKVGIAITDILTGMYASLAITAAIAHCERGGSGQYIDVALLDS
                     MVAFNANQISGYLVSGNIPKRYGNAHPNVVPYQVFPCKDGHIILAVGNDSQFASLCKV
                     AGRSELAEDKRFRLMSGRIVNRDALIPLIAGIMRTRGMHEWIEVLEAANVPCGPINNM
                     QQVFEDPQVQHRGLKVEIPTPAGVPCPTVASPMRFSGTPVEYTVPPPTLGQHTQEILQ
                     GLLGMDRAAVDALAAKGIV"
     gene            complement(972..1394)
                     /locus_tag="VKJ77_12240"
     CDS             complement(972..1394)
                     /locus_tag="VKJ77_12240"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HMC46083.1"
                     /translation="MIYLDTSAALPLFVQEPASEAVDAWLESCTDPIISSDWIVPEFA
                     SALSIKVRRGEINARQARAAWKDFDAFCNSGLRLLPVSRKAFKEAAMMALNAPSGLRS
                     GDSLHLAMALEAGASGLSTADDMLENNAKAKGLNVIRL"
BASE COUNT          295 a          489 c          463 g          295 t
ORIGIN      
        1 atggcttgag ctacgggcaa ttgcgcgaag aaaatccgcg tctgatctac tgctccatca
       61 ccggattcgg ccagtcgggt ccgtatgcgc cccgtcccgg ctatgacttc gtgtttcagg
      121 gcatgggcgg actgatgagc atcaccggcg agcgcgacga actgcccggc ggcgggccga
      181 tgaaagtcgg catcgccatc accgacatac tcaccggcat gtatgcgagc ctggcgatta
      241 ccgccgccat cgcgcactgc gagcgcggcg gcagcggcca gtacatcgac gtggcgctgc
      301 tcgattccat ggtcgcgttc aatgccaacc agatcagcgg ctacctcgtc tcgggcaaca
      361 tccccaagcg ctacggcaat gcccatccca acgtcgtgcc ctatcaggta ttcccgtgca
      421 aggacggcca catcattctg gcggtcggca acgacagcca gttcgcgagc ttgtgcaagg
      481 tggccggccg gtccgaactc gccgaggaca agcgcttccg gctgatgtcc gggcgcatcg
      541 tcaaccgcga tgcgctgatc ccgctgatcg ccgggatcat gcgcacgcgc ggcatgcacg
      601 aatggatcga ggtactggag gccgccaacg ttccctgcgg accgatcaac aacatgcagc
      661 aggtattcga ggatccgcag gtgcagcacc gcggactgaa ggtcgaaatc ccgacccccg
      721 cgggcgttcc gtgccctacc gtggccagcc cgatgcgctt ttccgggacg ccggtggaat
      781 acaccgtgcc gccgccgacg ctgggccagc acacgcagga gatcctgcag ggcctgctcg
      841 gcatggaccg cgcggcagtg gatgcgctcg cggcgaaagg catcgtgtga gggaggtcgt
      901 tgcaaaatgc gtgaaaccca gtgtgtatgc ggctttcagg cacatatact tctgaagtgg
      961 ggagcggtga atcataatcg aatcacgttc aatcccttcg ctttcgcgtt gttctccagc
     1021 atgtcatctg ccgtcgataa tccgctggct cctgcttcga gtgccatcgc caaatgaagg
     1081 gaatcgcctg agcgcaagcc gcttggggcg ttcagcgcca tcatcgccgc ttccttgaat
     1141 gccttacggc tcaccggcag caagcgcaat cccgagttgc agaaggcgtc gaagtccttc
     1201 catgccgcgc gcgcttgcct ggcgttgatt tcacctcttc gcaccttgat agatagggcg
     1261 ctagcgaact cgggcacgat ccagtcagat gaaatgatcg gatcggtaca agattccagc
     1321 caggcatcga ctgcctcgct tgccggttcc tgcacgaaaa gaggcaaggc ggcgctggta
     1381 tcaagataga tcatcagtag cgatcctcac ggcgcatgat cgcgaccgtc gccgtcgtca
     1441 tcggcatgct tgcccgaagt ttccgcagac gcttgatgaa tgcccccttg tcgaacggct
     1501 gggccggcgt cagcttgatc tcgcctgctg gcgtcacttc cg
//
LOCUS       DATGBK010000876         2250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_102912, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000876 DATGBK010000000
VERSION     DATGBK010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102912"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(167..1042)
                     /locus_tag="VKJ77_12245"
     CDS             complement(167..1042)
                     /locus_tag="VKJ77_12245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HMC46084.1"
                     /translation="MFDQVVFAGGGNRCWWQAGFWDVVQPELKLRPRVITSISAGAAT
                     ACMLYMNRSEWVMDYYAHVLRDNPKNAYWGNLLRSESVFPHYRIYRQALLDIYGAEFA
                     SLQDAPEIRIGVSHLPRWLGARSAVAAGLIAYNIEKYVRKKLHPTLGQSLGFHPEFVK
                     AQECASVDDLADLILQSSCTPPFTPVMHRHGRPVLDGGMVDNVPVGALDATPGLVLVM
                     VTRVYPRPQMFVVEHGANRDQRRVYVQPSRKVPISAWDYTSPSLMRPAYDLGRADGEQ
                     FLTRLPDLLGAAAHL"
     gene            complement(1054..1458)
                     /locus_tag="VKJ77_12250"
     CDS             complement(1054..1458)
                     /locus_tag="VKJ77_12250"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HMC46085.1"
                     /translation="MDESAIRVLLDTTFAPWIRDLDLTPESSTDTSVTLRLPHADKLR
                     HVGGVICGQVFMAAADTTMIVAIAHALGGFQPMTTVSLTTSFLRPVKAGDVLVTASIL
                     RRGRNLVFGEIELHDKTGALAAHATTTVMLLT"
     gene            1730..1805
                     /locus_tag="VKJ77_12255"
     tRNA            1730..1805
                     /locus_tag="VKJ77_12255"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1763..1765,aa:Lys,seq:ctt)
     gene            complement(1893..>2250)
                     /locus_tag="VKJ77_12260"
     CDS             complement(1893..>2250)
                     /locus_tag="VKJ77_12260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46086.1"
                     /translation="IAPSYGFFGLALVVIGVSAQTITTTTNSTMQLSTEPAMRGRVMA
                     IFLAIALGGTPLGAPVVGWVADTFGPRWALGVAAAAGFAAAIVGIRYLAKYRQLRVFI
                     DAGRLRFSIDEGDAVV"
BASE COUNT          445 a          661 c          684 g          460 t
ORIGIN      
        1 gcgaaacgcc ggatcgctcg atgcctcgat ggccggtttg ttcgctgcac gcaccagatg
       61 atcgcgggag tacgcgtcgt agcgtgacgt gccggagccc tgatcgccgg tccagacgac
      121 ttgcagcgtg tatgtgtggt gtttggtcat cggttcaata ctccttttag agatgcgccg
      181 ctgcgccgag caggtcgggc aaacgggtca ggaattgctc gccgtctgca cggcccaggt
      241 cgtacgcggg ccgcatcagc gacggactcg tgtaatccca tgccgaaatg ggcaccttgc
      301 gggatggctg cacataaacg cgacgctggt cacggttcgc gccgtgctcc acgacaaaca
      361 tctgcgggcg cggatacacg cgcgtcacca tcacaagaac cagtcccggc gttgcatcca
      421 gcgcgccgac cggcacattg tcgaccatgc cgccatcgag caccgggcgg ccgtgccggt
      481 gcatcaccgg cgtgaatggc ggcgtacacg acgattgcag gatcaggtcg gcgagatcat
      541 cgacgctcgc gcactcttgc gccttcacga actccggatg gaaaccgagc gactgaccga
      601 gcgtgggatg cagcttcttg cgcacgtact tttcgatgtt ataggcgatc aaccctgcag
      661 ccacggcgct tcgtgcgcct agccaacgcg gtaaatgcga tacgccgata cgaatctccg
      721 gcgcgtcttg cagcgatgca aactcggcgc cgtagatatc gagtagtgcc tgccggtaga
      781 tccgatagtg aggaaacacc gattcgctgc gcaacaaatt gccccaatac gcgttcttcg
      841 ggttgtcgcg cagcacgtgc gcgtagtagt ccattaccca ctcggagcgg ttcatgtaca
      901 gcatgcaggc cgtggccgca ccggccgaga tgctggtgat cacacgtgga cgcagcttga
      961 gttccggctg aacgacgtcc cagaaaccgg cttgccacca gcagcggttg ccgccgccgg
     1021 cgaatacgac ttgatcgaac atgttggctt gttttatgtg aggagcatga ccgtggtggt
     1081 cgcgtgagcg gcgagcgcac cggttttgtc gtggagttcg atttcgccga agaccagatt
     1141 gcggccgcgg cgcaggattg acgcggtcac gagaacatcg ccggctttca ccgggcgtag
     1201 gaagcttgtg gtgagcgaga cggtggtcat cggctggaaa ccgcctagcg cgtgtgcaat
     1261 ggcaacgatc atggtggtgt cagcggcggc catgaaaacc tggccgcaga tcacgccgcc
     1321 cacgtggcgg agtttgtccg cgtgcgggag acgaagagtg acgctggtat cggtggagct
     1381 ttccggagtc aggtccaagt cgcggatcca cggcgcaaag gtggtgtcga gcagaacgcg
     1441 gatggcggat tcgtccatgg gtttcgtttt attgatggtg gtctcgcggc tgtttttgta
     1501 gctgctttcg tgcggttgcc ggggccgcaa cgagtcgtgt ttcatgcgtc cgtcatgata
     1561 acggctcgtg acaattgccc gaagcgaggc ttttttggga tggccaatga gcgtccgcgc
     1621 catgtgtcac gcggctttca ggtatctgcg agacggtatt ttcaggtttt gcgttgcgga
     1681 cagttgcgca atcggcgaaa acgtcgctat aattcggatt cagtttttcg gggcgttagc
     1741 tcagctggta gagcagcgga ctcttaatcc gtaggtcgac agttcgaatc tgtcacgccc
     1801 caccaagtat tcaaaagggt ttgcaagctt ttggcttgca aacccttttt cattttggct
     1861 tcggtttatc gcctgggatg ttcacccctc cttcaaacca ccgcatcccc ctcatcgata
     1921 ctaaaccgca gcctccctgc atcgataaac actcgcaact gccgatactt cgccaaatac
     1981 cgaatcccaa caatcgccgc agcaaacccc gccgccgcgg caacgccaag cgcccaacgc
     2041 gggccgaatg tatcggcgac ccaacctacg accggcgcac ccaaaggcgt gccacccaac
     2101 gcaatcgcca aaaagatcgc catcacgcgc ccgcgcatgg cgggctcggt ggatagctgc
     2161 atcgtgctgt ttgtcgtcgt ggtgatggtt tgcgcggaca cgccgatgac cacaagcgca
     2221 agaccaaaga acccatagct cggtgcaatc
//
LOCUS       DATGBK010000877         4048 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_218977, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000877 DATGBK010000000
VERSION     DATGBK010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4048
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218977"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VKJ77_12265"
     CDS             <1..901
                     /locus_tag="VKJ77_12265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012406210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46087.1"
                     /translation="PPFEKAHDVKIVYVAGNSSDTLAKLQAQKGHQQINVAVMDDGPM
                     YQAMQMGLCAKVEEAPVMKDLYPLARLGPTSVGVGMVATGIGYNADAFKKMGLPAPDS
                     WSVLYDKRLKGKLGMPPITNTYGLHTLVMLARMNGGGEKNIDPGFTAMTQQVAPDVLS
                     WAPTPGEMDGLMQSGDVILAPYGSGRAVALQNTGFPLKFFYPKEGGVALQVGACAVAE
                     NAQPALSQQFIQYLLSPQVQMIQAQAIGLGPVNKTVQLTPEVAARVPYGPEQISKLVA
                     VDWATINQHRTEWTERWNRSVER"
     gene            954..2033
                     /locus_tag="VKJ77_12270"
     CDS             954..2033
                     /locus_tag="VKJ77_12270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014971987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46088.1"
                     /translation="MSFLTLKGISKHYGDFTAIEHIDLDVERGEFLSLLGPSGCGKTT
                     TLQMIAGFVTPSTGTILLDGRDITHERPEKRGMGVVFQSYALFPHMTVNGNVGFGLEM
                     RNMKRAARAERVAEALDLVRLNGLGGRYPKELSGGQRQRVAIARALAMRPELLLLDEP
                     MSNLDAKLREEMHIELRSIQKRLGITTILVTHDQVEAMTMSDRIAVMHRGRIAQLSTP
                     FEAYERPETPFASAFLGKTNLLPGAVLRRNARCAEVDVAGTTLKVPHEGRDVQGEVNV
                     YIRPEKVHLANVDTAGVRATGRITTRVFTGNQWLLLIDTGLGQLSVAQANNGAPPPDE
                     GAEVGVAWSDDDLRVLQKEGHHGHA"
     gene            2020..2892
                     /locus_tag="VKJ77_12275"
     CDS             2020..2892
                     /locus_tag="VKJ77_12275"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46089.1"
                     /translation="MATLDNDRAGAAPWLLSAPALLLFGGLLLVPLLLTLVLSFHVFS
                     DSQGTLATYTLRNYLEVVTDPYYGAIFARTAGMAFAVTFLCILLGVPETIVLARMKRP
                     WQSICLLVVLGPLLISVVVRTLGWQILLGNNGVLNNALQALHITSEPIRLVFTMTGVV
                     IALTHVLVPFMVMSVWATLQKLDPQVEWAGRSMGASPFRVFRRVVLPQILPGVLSGSI
                     IVFALSASAFATPALIGGRRLKVVATAAYDEFLGTLNWPLGATIAVLLLIANVAIVLG
                     CSRLAERRFKHIFD"
     gene            2906..3703
                     /locus_tag="VKJ77_12280"
     CDS             2906..3703
                     /locus_tag="VKJ77_12280"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46090.1"
                     /translation="MKQNGFLGLLFNALFLTFIAAPLVVVIAVSFTDKGFISLPFDGA
                     SLRWFRAILANDQMVDAFWLSVRLALVAATVGVALALPAALAIARYRFPGRAALTGFF
                     LSPMMIPAVVLGIAFLRFLSLLGLGGSFWALCATHVIIVLPYALRLVLSSAIGLDRDA
                     ERAALSCGASRFTAFRRVVLPMIRTGVAGGWLLSFIQSFDELTMTIFVATPGTTTLPV
                     AMYNQIAQTIDPLVASVSTVLIVGTIVLMLVLDRMVGLDRVLIGETR"
     gene            3700..>4048
                     /locus_tag="VKJ77_12285"
     CDS             3700..>4048
                     /locus_tag="VKJ77_12285"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC46091.1"
                     /translation="MRGHSVDSPDVLVVGGGLVGTAVAYGLAREGAKVTVLDQGDGGF
                     RASRGNFGLVWVQGKGYGLSPYARWSRSSSRLWPGLAAALLEETGIDVSLKQPGGFHL
                     CFSDDEMAEREKRL"
BASE COUNT          686 a         1203 c         1313 g          846 t
ORIGIN      
        1 cccgccgttc gagaaagcgc acgacgtcaa gatcgtctac gttgcgggta attccagcga
       61 cacgctcgcg aaattgcagg cgcaaaaagg gcatcagcag atcaacgtcg cggtgatgga
      121 tgacggcccg atgtaccagg cgatgcagat gggtttgtgc gcgaaggtcg aggaagcgcc
      181 cgtgatgaag gacttgtatc cgctcgcgcg tcttggtccg acctcggtcg gtgtcggcat
      241 ggtcgcaaca ggaattggct ataacgccga cgcattcaag aagatgggcc tgcccgcgcc
      301 ggactcctgg agcgtgctgt atgacaagcg cctgaagggc aagctcggca tgccgcctat
      361 caccaacact tacggcctgc atacgcttgt catgctggcg cgcatgaatg gcggcggcga
      421 gaagaacatc gacccgggat tcaccgcgat gacccagcag gtcgcgccag atgttctgtc
      481 gtgggcgccg acgcccggtg agatggacgg cctgatgcaa agcggcgacg tgatcctcgc
      541 gccgtatggc agcggtcgcg ccgtggcgct gcaaaacacc ggtttcccgc tgaagttctt
      601 ctacccgaaa gagggcggcg tcgcgctgca ggtcggcgct tgcgcggtgg ccgagaatgc
      661 gcagcccgcg ttgtcgcagc agttcatcca gtacctgttg agcccgcaag tgcagatgat
      721 ccaggcgcag gcgatcggcc tgggtccggt caacaagacc gtgcaactga cgcctgaagt
      781 ggcggcgcgc gtgccgtatg gtcctgagca gatctcgaag ctcgtcgcgg tggactgggc
      841 gacgatcaac cagcatagga ccgaatggac cgaacgctgg aatcgcagcg tggagcggtg
      901 aactgcacgc ctggcttcac acatcgaccg ccgacctcaa cccacggacg cacatgagct
      961 ttctgaccct caaaggcatc tcgaagcact acggcgactt caccgcgatc gagcacatcg
     1021 accttgatgt tgagcgtggc gagttcctgt cgctgctcgg tccctccggt tgcggcaaga
     1081 ccacgacctt gcagatgatc gcgggttttg tcacgccaag caccggcacg atcctgcttg
     1141 acggccgcga catcacgcat gaacgcccgg agaaacgtgg catgggcgtc gtgttccaga
     1201 gctatgcgtt gtttccgcat atgaccgtga acggcaacgt cggcttcggt ctcgagatgc
     1261 gcaacatgaa acgcgcggca cgtgccgaac gcgtggccga agcgctcgac ctggtgcgtt
     1321 tgaatggact tggcgggcgt tatccaaaag agttgtcggg tggtcagcgg caacgcgtcg
     1381 cgattgcccg tgcgctcgcc atgcgccccg aactgctgtt gctcgacgaa ccgatgtcca
     1441 atctcgatgc caagttgcgc gaggaaatgc acatcgaatt gcggtcgata caaaagcgtc
     1501 ttggcatcac gaccattctt gttacacacg atcaggtcga agccatgacg atgagcgatc
     1561 gcatcgcggt gatgcatcgc ggaaggattg cccaactgag cacaccgttc gaagcgtacg
     1621 agcggccgga gacgccattt gcatcggcgt ttcttggcaa gaccaatctg ctgcccggcg
     1681 cggtgctgcg tcgaaacgcg cgttgcgctg aagtcgatgt agcgggcacc acgctcaagg
     1741 tgccgcacga aggccgcgat gtgcagggcg aggtgaacgt gtatatccgc ccggagaagg
     1801 ttcatctcgc gaacgtcgat acagcgggtg ttcgtgccac tggccgcatt accacgcgcg
     1861 tgttcaccgg caaccagtgg cttttgctga tcgataccgg ccttgggcaa ctgagtgtcg
     1921 cccaggcgaa caacggtgcg ccgccacccg atgaaggcgc ggaggttggt gtggcgtggt
     1981 cggatgacga cttgcgtgta cttcagaagg agggacacca tggccacgct tgacaacgat
     2041 cgagcgggcg ccgcgccgtg gctcctatct gcccccgcgt tgctgttatt cggcggcctg
     2101 ctgctggtgc cgctgctgtt gacgctcgtg ctgtccttcc acgtattcag cgacagccag
     2161 ggcacgcttg cgacctacac gctgcgcaac tacctcgaag tcgtcaccga cccctactac
     2221 ggcgcaatct tcgcgcgcac cgcaggaatg gcgttcgcgg tgacctttct ctgcatcctg
     2281 cttggcgtgc ccgagaccat cgtgctcgcg cggatgaagc ggccgtggca gtccatctgc
     2341 ctgctcgtcg tgctcggacc gctgttgata tcggtcgtcg tgcgcacgct tggctggcaa
     2401 atcctgctcg gtaataacgg agtactgaac aacgcgttgc aggcgctgca cattacgtcg
     2461 gagcctattc gtcttgtctt caccatgacc ggcgtcgtga tcgcgctgac gcacgtgctg
     2521 gtgcccttca tggtgatgtc ggtgtgggcg acgttgcaga agctggaccc tcaggtggaa
     2581 tgggccggcc ggtccatggg cgcctcgccg ttccgcgtgt tccggcgcgt ggttctgccg
     2641 cagattctgc cgggcgtgct gtccggatcg atcattgtgt tcgcgctctc cgcatcggcg
     2701 ttcgcgacac ctgcgttgat cggcgggcgg cgtctcaagg tggtcgcgac cgctgcgtac
     2761 gacgagttcc tcggtacgct gaactggcct ctgggggcga caatcgctgt cctgttgctg
     2821 atcgccaatg tggccatcgt gctgggctgc agtcgcctgg ccgagcgccg cttcaagcat
     2881 atcttcgact gaaccgggag acgtcatgaa acaaaacgga ttcctcggcc tgttgttcaa
     2941 cgcgctattt ctcacgttca ttgcagcgcc gctggtcgtc gtgatcgcgg tttcgttcac
     3001 cgacaagggc ttcatctcac tgccgttcga tggtgcgtcg ctgcgctggt tcagggcaat
     3061 cctggccaac gaccagatgg tggacgcctt ctggctctcg gtgcgcctcg cgctggtggc
     3121 ggccacggtc ggggtggcgc tcgcgttgcc ggcggcgctg gccatcgccc ggtatcgttt
     3181 tcctggccgc gctgcgctga ccggattttt cctctcgccc atgatgattc ccgctgtcgt
     3241 gctcggcatc gcgttcctgc gattcctgag tttgctcggg ctcggcggtt cgttctgggc
     3301 gctatgcgcg acgcacgtga tcatcgtgtt gccgtacgcg ttgcgcctgg tgttgtcatc
     3361 ggctattggt cttgatcgtg atgccgaacg tgcggcattg tcgtgtggcg cgagccgttt
     3421 caccgccttt cgccgcgtcg tgttgccgat gatccgtacc ggcgtggccg gcggctggct
     3481 gctgtccttc atccagagtt tcgacgaact cacgatgacc atttttgttg cgacacccgg
     3541 cacgaccacg ctgcccgtcg cgatgtacaa ccagatcgcg cagacgatcg atccactggt
     3601 ggcctccgtg tcgaccgtgt tgatcgtcgg tacgattgta ttgatgctgg tcctcgaccg
     3661 gatggtgggt ctggaccgcg tcctgattgg agaaacacga tgagaggtca ttcagtcgac
     3721 agtcccgacg tcctggtggt cgggggtggg ctggtaggaa cggcggtggc ttacgggctg
     3781 gcgcgcgaag gtgcaaaggt cacggtgctg gaccagggtg acggcggctt tcgcgcatcg
     3841 cgcggtaatt tcggactggt gtgggtgcag ggtaaaggct acggtttgtc gccctacgca
     3901 cgctggtcgc gcagttcgtc gcggctgtgg ccgggactcg ctgcggcgtt gctggaagaa
     3961 acgggtattg atgtatcgct caagcagccc ggtggtttcc acctgtgttt ctccgacgat
     4021 gaaatggccg agcgcgagaa gcgcctgt
//
LOCUS       DATGBK010000878         1512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_311409, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000878 DATGBK010000000
VERSION     DATGBK010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311409"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..>1512
                     /gene="aspS"
                     /locus_tag="VKJ77_12290"
     CDS             53..>1512
                     /gene="aspS"
                     /locus_tag="VKJ77_12290"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HMC46092.1"
                     /translation="METTKRERATCGSLTAAHAGHEVDLRGWVHRRRDHGGLIFIDLR
                     DRDGLTQLIFDPADAQTFAVAETLRSEDVVGVLGLVRLRPAGTENAKLATGDVEVAAT
                     AITIYNRSETPPFVIASDDDVDENIRLRYRYLDLRRTRMQHNLTVRHKLVKAMRDFFD
                     ERDFLEIETPNLIKSTPEGARDYLVPSRVHQGSFYALPQSPQILKQILMIGGLGRYMQ
                     IARCYRDEDPRADRQPEFSQLDVEMTFVSEDDVMNMMEECVRTVWKKALGVAIPEKLD
                     RLTYAQAMATYGSDKPDRRFGLELVDVMDLFATSEFTTFRELSQGTGNRIAALRYPGG
                     ASLSRREFDALTETAKQFGAKGLAYVTLAPDGPKGGIAKFLDAALVAAVSERTGAVEG
                     DAILFVADTYVLASDVAGRIRLELGDRLSLRDPAAFAFCWVHGFPLFEKDAETGEITF
                     SHHPFTAPAPGEEDRFDSDPLSVRAQHYDLVLNGFE"
BASE COUNT          306 a          456 c          448 g          302 t
ORIGIN      
        1 cgatcgctat cctatcaata tcactacctt accggagtca aggcagcctt acgtggaaac
       61 gactaaacgc gagcgcgcaa cgtgcggatc gctcactgca gcacatgcgg gccacgaggt
      121 cgatctgcgc ggttgggtgc atcgccgccg cgaccacggc gggctgatct tcatcgatct
      181 gcgcgaccgt gacggtttaa cgcagctcat cttcgatccg gccgatgcgc aaacgtttgc
      241 cgtcgccgaa acgctgcgca gcgaagacgt cgtcggcgtg ctcggcttgg tgcgcctgcg
      301 tcccgccgga acggagaacg cgaagctggc gacaggcgac gttgaagttg cagcgaccgc
      361 gatcacgatc tacaaccgtt cggaaacacc accgtttgtg attgcaagcg acgacgatgt
      421 cgatgagaac attcgcctgc gctaccgcta cttggacttg cgccgcacgc gcatgcagca
      481 caatctgacc gtgcggcaca agctcgtcaa ggcgatgcgt gatttttttg acgagcgtga
      541 ttttctcgaa atcgagacgc cgaacctgat caagtcgacg ccggagggcg cgcgcgacta
      601 cctcgtgccg tcacgcgtgc atcaaggcag cttttacgca ttgccgcaat cgccgcaaat
      661 tctcaagcaa atccttatga tcggtggctt aggccgctac atgcagatcg cccgctgcta
      721 tcgcgacgag gatccgcgcg ccgaccgcca gccggagttc tcgcagctcg atgtcgagat
      781 gaccttcgta agcgaagacg acgtgatgaa tatgatggaa gagtgcgttc gtactgtctg
      841 gaaaaaagcg ctcggcgtcg ccatcccgga gaaactcgac cgtctgacct atgcccaggc
      901 gatggcaacc tacggttcgg ataaacccga tcgtcgcttc gggcttgaac tcgtcgacgt
      961 gatggacttg tttgcaacga gcgagttcac gacgttccgt gagctttcgc aagggacggg
     1021 caatcgtatc gccgcgctgc gctatcccgg gggggcgtca ctatcgcgtc gcgagtttga
     1081 tgcgctcacg gaaaccgcca agcaattcgg cgcgaaaggg ttggcatacg ttaccctggc
     1141 gcccgatggc cccaaaggcg gcatcgcgaa atttctcgat gctgcgctcg tcgcggcggt
     1201 gagcgaaaga accggcgcgg ttgagggcga cgcgattctg tttgtcgccg atacctacgt
     1261 acttgcaagc gatgtggcag gccgcatccg gcttgaactc ggcgaccggt tgagcttgcg
     1321 cgatcccgcc gcgtttgcat tttgctgggt ccacggattt ccgctgttcg aaaaagatgc
     1381 ggaaaccggt gaaatcacgt tctcgcatca tcccttcacc gcgcccgctc ccggtgaaga
     1441 agatcgcttc gacagcgacc cgttatccgt gcgcgcgcaa cactacgatc tcgtgctcaa
     1501 cggcttcgag tt
//
LOCUS       DATGBK010000879         1580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_241966, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000879 DATGBK010000000
VERSION     DATGBK010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241966"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..581)
                     /gene="trmD"
                     /locus_tag="VKJ77_12295"
     CDS             complement(<1..581)
                     /gene="trmD"
                     /locus_tag="VKJ77_12295"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HMC46093.1"
                     /translation="MQFDVVTLFPEMFRALTDWGITSRAVKQERFGLRTWNPRDFTTD
                     NYRTIDDRPYGGGPGMVMLARPLEDAISAAKAAQAEQGISGSRVVMMSPQGKTLNHER
                     VMQFAQEPGLVVLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALMDAVVRQL
                     PGVLNDSQSAVQDSFVDVLLDCPHYTRPEEYGGV"
     gene            complement(610..1317)
                     /gene="rimM"
                     /locus_tag="VKJ77_12300"
     CDS             complement(610..1317)
                     /gene="rimM"
                     /locus_tag="VKJ77_12300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580215.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HMC46094.1"
                     /translation="MSTRDSASDSGLTAACGEKPEPNEATFGAFVRKPGARRVAVDAS
                     DSAGSIEPVESLPDDAIEVGAIVDAYGLKGWVKIAPHAHAGHGGDAMLAAKRWWLVKG
                     NERKVVRCLQSKVHSDTVVAHFAGCDDRETAYALRGHSIHVLRSDFPKLTGDDEFYWV
                     DLIGLDVVNDADVALGQVAGMIDNGAHSIMRVEFPTTGKDGSPATGERLIPFVGVYVK
                     TVDQAARRIVVDWDADY"
     gene            complement(1397..>1580)
                     /gene="rpsP"
                     /locus_tag="VKJ77_12305"
     CDS             complement(1397..>1580)
                     /gene="rpsP"
                     /locus_tag="VKJ77_12305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HMC46095.1"
                     /translation="RSRRDGRFIERVGFYNPVATKGESLRIAQDRLTYWQDNGAQLSP
                     TVARLVKQSQQAQPAA"
BASE COUNT          327 a          527 c          426 g          300 t
ORIGIN      
        1 acaccgccgt attcttccgg gcgtgtgtag tgcgggcaat cgagcagcac atcgacgaaa
       61 ctgtcctgca cagccgactg cgagtcgttc agcacgccgg gcaactgacg caccactgcg
      121 tccatgagcg ccatggccgg caattcgccg cccgacaaca cgaagtcgcc aaggctcact
      181 tcttcgtcaa ccactcgatc gatcaagcgc tggtcaatgg cttcgtaacg gccgcacagc
      241 acaacgagac ccggctcctg agcgaattgc atcacccgct catgattcag cgttttccct
      301 tgcggcgaca tcatcaccac acgcgatccg ctgatgccct gctccgcctg cgccgctttc
      361 gcagccgaaa tcgcatcttc cagcggccgc gctagcatga ccatgccggg gccgccgccg
      421 tacgggcgat catcgatggt tcgataattg tccgtggtga aatcgcgagg attccacgtg
      481 cgcagaccaa accgttcctg cttcactgcc cggctggtaa tgccccaatc ggtcagcgcg
      541 cgaaacatct cgggaaagag cgtcacgacg tcaaactgca tcgctctctc cttgcagtga
      601 atcgatggat caatagtcag cgtcccagtc gacgacaatc ctgcgcgccg cctgatccac
      661 tgttttgacg tatacgccaa cgaacggaat caaccgttcg ccggtggcgg gcgaaccgtc
      721 cttgcccgta gtcggaaatt ccacgcgcat gatggaatgc gcgccattgt cgatcatgcc
      781 tgcgacctgg cctaaagcca cgtccgcgtc attcacgacg tcgaggccga tcagatcgac
      841 ccagtagaat tcgtcatcac cggtcagctt cgggaagtcg ctgcgcaaca cgtggatact
      901 gtgaccacgt aacgcatacg ccgtctcgcg gtcatcgcag ccggcaaagt gcgcgacgac
      961 cgtgtcacta tgcactttgg actgcaggca ccgaaccacc ttgcgctcgt ttcccttgac
     1021 cagccaccag cgctttgccg cgagcattgc gtcgccgcca tgacccgcat gcgcatgcgg
     1081 cgcaatcttg acccagccct tcagtccgta agcgtcgacg atcgcaccca cttcaatggc
     1141 gtcatcgggc aaactttcta cgggctcgat cgagcctgcg ctatctgaag cgtcgacagc
     1201 cacgcgacgc gcgcccggct tacggacaaa cgcgccaaac gtggcttcgt tcggctcagg
     1261 tttttcgccg catgcagctg tcaaacctga gtctgaagca gaatcacgcg tcgacatgag
     1321 ccaatctccc gcgaacctcg gcagctggaa tcgatcggat cacaagtacc cgagcgatcg
     1381 actgcagcaa gcgcacttaa gcagccggct gagcttgttg cgattgcttg accagacggg
     1441 caaccgtagg cgacaactgc gcgccattgt cttgccagta cgtcaggcgg tcctgggcga
     1501 tacgcagcga ttcgcctttg gtcgcgaccg ggttgtaaaa acccacgcgt tcgatgaagc
     1561 ggccatcacg gcggctacgc
//
LOCUS       DATGBK010000880         3694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_148985, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000880 DATGBK010000000
VERSION     DATGBK010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3694
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148985"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..714)
                     /locus_tag="VKJ77_12310"
     CDS             complement(<1..714)
                     /locus_tag="VKJ77_12310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007875474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC46096.1"
                     /translation="MSSIGSIGSIVRAVDVRKSYGDFKALQGITLDIPKGEVLCVIGP
                     SGSGKSTFLRCINQLEEINDGALWVNGERVGYRRVGNKLHALSEKQVARQRLATGMVF
                     QRFNLFPHKTVLENVIEGPVQVLKRRRSEAIVEARALLERVGLAHKCDAFPVELSGGQ
                     QQRVAIARALAMHPQLMLFDEPTSALDPELVGEVLAVMRDLAKSGMTMIVVTHELGFA
                     REVANRVVFMDQGQVVESGT"
     gene            complement(744..1511)
                     /locus_tag="VKJ77_12315"
     CDS             complement(744..1511)
                     /locus_tag="VKJ77_12315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006759530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC46097.1"
                     /translation="MILAMVVYIGLAFAHGQIEWRYVARFLTAKSILTGLVNTIVMTV
                     LAMALGVALGVITAIMRLSTNPVLQTVAQAYVWLFRGTPIILQLLLWFNLALVFPSIG
                     VPGLFEFRTVDVMTPFLAALLGLGINQGAYTSEVVRAGLLSVDTGQYEAAKSIGMPRL
                     QALRRVILPQAMRVIVPPIGNELVGMVKLTSLASVIQYAEMLHNAENIYYANARVIEL
                     LMVAGIWYLVVVTVLSFMQSRVERFYARGAGRPSGRQ"
     gene            complement(1622..3049)
                     /gene="argH"
                     /locus_tag="VKJ77_12320"
     CDS             complement(1622..3049)
                     /gene="argH"
                     /locus_tag="VKJ77_12320"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011661327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HMC46098.1"
                     /translation="MTQHSDRLWGGRFKTGPSPALTALSRSDPSFFRLAPYDLAGSRA
                     HAQELRRAEILTADELQQLLSEMDRLEAQFLAGEVGPTLDDEDVHTFLERELTQRLGA
                     TGGKLRAGRSRNDQAANDLRLFLRDKARTLAQAVIDLQNALIEQANAHVHSVSAGFTH
                     LQPAQPIVFAHHLLAHAQSIYRDVDRLVDWDRRSARSPLGAAALAGSAICRRPELSAA
                     ELGYDGPCENSIDAVASRDHVAEFVFIASMLSVNLSRLSEEVILWTSRQFGWVVLDDG
                     YATGSSIMPQKKNSDIAELTRGKAGRLIGNLSGLLATLKSLPLAYNRDLAEDKIAAFD
                     CIDTLELVLPAMAGMIRTMRVNVDEMRRQAPLGFTLATEVADWLALRGVPFSEAHEIT
                     GALVQVCEEQGIGLAEVSAVTLAKVDARLEPAVLDHVTLDAAVAARSGYGGTAPVRVA
                     EQITRLQTALDRQLAWATSYGGPTC"
     gene            3245..>3694
                     /locus_tag="VKJ77_12325"
     CDS             3245..>3694
                     /locus_tag="VKJ77_12325"
                     /inference="COORDINATES: protein motif:HMM:NF012354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46099.1"
                     /translation="MKIERYPPFNVLQSLLVVARCGNFTAASQQLFLSQSAVSRHIQQ
                     IEEYFGCALFVRHTRMVVPTAECQRLVPIVEELLATARRSMHIISTGGQTITLRVTPT
                     LAARWLLPRLPDFYAEVPGTQLNIDTAWFLPTNFGEGTLDAAILFGNG"
BASE COUNT          730 a         1187 c         1079 g          698 t
ORIGIN      
        1 cgtgccgctc tccacgacct gcccctgatc catgaacaca acgcgattgg ccacttcgcg
       61 cgcgaacccg agctcatgcg tgaccacgat catcgtcatg ccgctcttgg cgagatcgcg
      121 catcacggcg agcacttcgc cgaccagttc cgggtcaagc gcggaggtgg gttcatcgaa
      181 gagcatgagt tgcggatgca tcgcaagcgc ccgtgcaatg gccacgcgct gttgctgccc
      241 acctgacaac tccaccggaa acgcatcgca cttgtgagca aggccgacgc gttcgagcaa
      301 cgcacgcgct tcaacaatgg cctccgagcg acgccgcttg agcacctgca ccggcccttc
      361 aatcacgttc tccagcacag tcttgtgcgg aaacaggttg aagcgctgga acaccatgcc
      421 ggtcgccagc cgctgacgcg caacctgctt ctccgacaac gcatgcagct tgttgcccac
      481 gcgccggtag ccgactcgtt cgccgttgac ccacaacgcg ccgtcgttga tctcttcaag
      541 ctggttaatg cagcgcagga acgtgctctt gcccgaaccg gacggtccga tcacgcacag
      601 cacttcgcct ttgggaatgt cgagcgtgat gccttgcagc gccttgaagt cgccgtagga
      661 cttgcgcacg tcgacagcac gaacgattga accgattgaa ccgatcgaac tcatggggag
      721 tgtttccttt tcagtcaccg ggttcattgc cggcccgacg gacgacccgc gccgcgtgcg
      781 taaaaccgtt ccacgcgcga ctgcatgaat gacagcaccg tcaccaccac gagataccag
      841 atacccgcga ccatcagcag ctcgatcacc cgggcgttgg catagtagat gttctccgcg
      901 ttgtgcagca tctccgcgta ctggatcacg ctcgctagcg aagtgagctt gaccatgccg
      961 accagttcgt tgccgatagg cggcacgatc acgcgcattg cctgcggcag gatcacgcgg
     1021 cgcagcgcct gcagcctcgg catgccgatg gacttcgctg cttcgtactg gcccgtgtct
     1081 accgagagca aaccagcgcg caccacttcc gaggtatacg cgccctgatt gataccgagc
     1141 ccaagcaatg cagcgaggaa cggcgtcatc acatcgacgg tgcgaaattc gaagagaccg
     1201 ggtacgccta tcgacggaaa cactagcgcg aggttgaacc acaacagcag ttgcaggatg
     1261 atcggcgtgc cgcgaaacag ccatacataa gcttgtgcga ccgtctgcaa caccgggttg
     1321 gtcgacaacc gcatgatcgc tgtgatgacg cccaacgcga cgcccagtgc catcgcaagc
     1381 accgtcatga cgatagtgtt gacgaggccc gtaaggatcg atttcgccgt caggaaacgc
     1441 gcgacatagc gccattcgat ctgtccatgc gcaaacgcga gcccgatata aaccaccatc
     1501 gcgaggatca tggctgacgc tatataacgc ccccaatgcc gtcgacgcac gtattcaagt
     1561 tgcgcggaat cggacgtact ggcctcgatc gcgtcgacag gtgttgcgtc cttggcaacg
     1621 ctcagcatgt cggtccgccg tatgaagtgg cccatgccag ttgccggtcg agcgccgtct
     1681 gcaaacgtgt gatctgctcg gccacacgca ccggtgcagt accgccgtaa ccgctgcgcg
     1741 cagccacggc tgcgtcgagc gtcacgtggt ccagcacggc gggttccagc cgtgcgtcga
     1801 cctttgccag cgttacggcc gatacctcgg cgagtccgat gccctgctcc tcgcagactt
     1861 gcaccaacgc gcccgtaatc tcatgggctt cgctgaacgg cacgccgcgc agtgcgagcc
     1921 agtcggcaac ttcggtggcc agcgtgaacc cgagcggcgc ctgacgccgc atttcatcca
     1981 cgttcacgcg catcgtgcgg atcatgccgg ccatcgcggg cagcacgagt tcgagggtat
     2041 cgatgcaatc gaacgctgcg atcttgtctt ccgcgagatc acggttataa gcaagcggca
     2101 gcgacttgag cgtggcgagc aagccgctca ggttgccgat caacctcccc gcctttccgc
     2161 gcgtcagctc tgctatatcc gagtttttct tctgcggcat gatcgagctg ccggtcgcat
     2221 aaccgtcgtc gagcacgacc cacccgaact ggcgcgaggt ccagagaatg acttcctccg
     2281 agagccgcga caggttcacc gacagcatgc tcgcgataaa cacgaactcg gcaacgtggt
     2341 cgcgcgaggc gacggcgtcg atggagtttt cacacggacc gtcatagccc agttccgccg
     2401 ccgacaactc cggccgccgg catatcgccg atcccgccag cgcggctgcg cccagcggcg
     2461 aacgcgcgct gcggcgatcc caatccacca gacgatcgac atcgcgataa atcgactgcg
     2521 cgtgggcgag caagtgatgc gcgaacacaa tcggttgcgc cggctgcaaa tgcgtgaacc
     2581 ctgcgctcac gctatgcacg tgcgcgttcg cttgttcgat taatgcattc tgcaaatcga
     2641 tgaccgcttg ggccagcgta cgcgccttgt cgcgcaggaa gaggcgcaag tcgttcgccg
     2701 cctgatcgtt gcgcgaacgg ccggcgcgca atttgccgcc ggttgcgccc aggcgttgcg
     2761 tcagttcccg ttcgaggaag gtatgcacgt cttcatcgtc gagcgtcggg ccaacctcgc
     2821 ctgccaggaa ctgcgcttcc agccggtcca tttcgctcag caattgctgc agttcgtcag
     2881 ccgtcaggat ctccgcgcgt ctaagctcct gcgcatgcgc gcgtgagccc gcgaggtcat
     2941 atggtgctag ccggaagaaa cttgggtcgg agcgcgacag cgcggtcaat gcgggcgacg
     3001 ggccagtctt gaagcgtcca ccccacagcc ggtctgaatg ttgggtcatg caataactcc
     3061 ctggaagtgg atgggttgga tgcgggctta ttggtgcggt atatcgctca gcgccctgct
     3121 cgttggaagg cttcttgcgc tttcgagcgg gcaacaagcc ttaactttcg aggtgatttt
     3181 atgaacgcca atttctaagc gacaaacggt aaaatctcat ggttaccatg cacaacttgc
     3241 ataaatgaaa atcgagcgct atccgccatt caacgtgctg caatcgctgc tggttgtcgc
     3301 ccgttgcggt aatttcacgg cggcatcgca gcagttgttc ctcagccaga gcgcggtgag
     3361 ccggcatatc cagcagatcg aagagtattt cggctgcgca ttattcgtgc ggcacacgcg
     3421 aatggtggtg ccgacggcgg agtgccagcg gctcgtgcct atcgtggagg agctgcttgc
     3481 gaccgcgcgc cggtcgatgc atatcatcag caccggcggc cagaccatca cgctgcgagt
     3541 cacgcctacg ctagccgcac gctggctgct gccgcgcctt cccgacttct atgcggaggt
     3601 gccgggcacg cagttgaata tcgacaccgc gtggttcctg ccgaccaatt tcggcgaagg
     3661 cacgctggac gcagcgatcc tgttcggcaa tgga
//
LOCUS       DATGBK010000881         2858 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_126104, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000881 DATGBK010000000
VERSION     DATGBK010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2858
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126104"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VKJ77_12330"
     CDS             <1..213
                     /locus_tag="VKJ77_12330"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HMC46100.1"
                     /translation="ATSQFFINTVDNTGLDYPNGDGNGYAVFGKVIAGMDVVKKIEGT
                     PTTTRGPMGDVPQTNVVIQSASVVGK"
     gene            381..878
                     /locus_tag="VKJ77_12335"
     CDS             381..878
                     /locus_tag="VKJ77_12335"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HMC46101.1"
                     /translation="MVELHTNHGIIKIELNTEKAPKSVENFLNYVKKGHYDNTVFHRV
                     IDGFMIQGGGFEPGMKQKPTDAPIDNEANNGLKNEHGSVAMARTNDPHSATAQFFINV
                     GDNEFLNHSSPSPQGWGYAVFGKVVEGLDIVDKIRKVKTGSKGFHQDVPVDDVVIEKA
                     VVAGE"
     gene            896..1684
                     /locus_tag="VKJ77_12340"
     CDS             896..1684
                     /locus_tag="VKJ77_12340"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HMC46102.1"
                     /translation="MIETAETAGANDTARPLFFISDLHLSDAIPHTVAAFEHFIGVTA
                     NDADSVFILGDLFEFWVGDDVLDASVPGPRAAFARRMTALMHTLSERGIALYVMHGNR
                     DFLLGKRFMRAAGALPLPDPFVITAFGTRIVVAHGDALCTADPAYQRFRRFARNPVAQ
                     QLFLSLPLKLRLSIAERMRSTSEDGRMRPAQAKYDVTREAVAQLFASTGTHTMIHGHT
                     HLPAHHRETDGVRWVMADWELDHGEPRGGYLRVDAEGIRALPLE"
     gene            complement(1755..2537)
                     /gene="cysE"
                     /locus_tag="VKJ77_12345"
     CDS             complement(1755..2537)
                     /gene="cysE"
                     /locus_tag="VKJ77_12345"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HMC46103.1"
                     /translation="MFNRLREDIAAIRERDPAARSAWEVVTCYPGFHAVVLHRIAHAC
                     WRAGWRWLARFVSQFARFLTGIEIHPGATLGRRVFIDHGMGVVVGETAEIGDDCTIYQ
                     GVTLGGTSLARGAKRHPTLERGVIVGAGAKVLGGFTVGAEAKIGSNAVVVKPVPAGGT
                     AVGNPARVVMPATVKPAQKGSGERAAFCAYGITPNADDPVSLAIHGLIDHASTQAHRV
                     DEIVAALEKLGTRIDAIGGVEDAAFIDLKRLSDAMKGEAARR"
BASE COUNT          569 a          884 c          863 g          542 t
ORIGIN      
        1 gctacctcgc agttcttcat caacacggtc gataacaccg gcctcgatta ccccaacgga
       61 gacggcaacg gttatgccgt gttcggcaag gtgatcgcgg gcatggacgt agtgaagaag
      121 atcgaaggca cgccgactac cacacgcggc ccgatgggcg atgtgccgca aacgaacgtc
      181 gtgatccagt cggcgagcgt cgtcggcaag taattgaccg gaagtcaagc ttgggcatcc
      241 gcaggtcaat taacctgtca ggcccaagcc ggggaacaag tcgtagccac tcgccttcat
      301 ggcgagcagg catgaagcag gcatacgccg tgcgcatcgc gtattgctcc atctactctt
      361 gaaaaggaaa ggaactcatc atggtcgaac tgcatacgaa tcacggcatc atcaagatcg
      421 aactgaacac tgagaaggcg cccaagtcgg tcgaaaactt tctgaactac gtaaagaaag
      481 gccactacga caacaccgtg ttccatcgcg tgatcgacgg cttcatgatc cagggcggcg
      541 gcttcgaacc gggcatgaag caaaagccga cggacgcacc gatcgacaac gaagccaaca
      601 acggtctgaa gaacgagcac ggttccgtcg ccatggcgcg taccaacgac ccgcattcgg
      661 ccaccgcgca gttcttcatc aacgtcggtg acaacgaatt cctgaatcac tcgtcgccgt
      721 cgccgcaagg ctggggttac gcggtattcg gcaaggtcgt ggaaggcctc gatatcgtcg
      781 acaagatccg caaggtcaag acgggctcga agggctttca tcaggacgtg ccggtggatg
      841 atgtcgtgat cgaaaaggct gtcgtcgccg gggaatgatc gactcgacgc acagcgtgat
      901 cgaaacagct gaaacagcgg gcgcgaacga tacagcgcgc ccgctgtttt tcatttctga
      961 tctccatctg agcgatgcca tcccgcacac ggtggcggcg ttcgagcatt tcatcggggt
     1021 gacggcgaac gatgccgact cggtgtttat ccttggcgac ctgttcgaat tctgggtcgg
     1081 cgacgatgtg ctggatgcat cggtgccggg gccacgcgcc gcgttcgcga ggcgcatgac
     1141 ggcattgatg cataccttgt ccgagcgcgg tattgcgttg tatgtgatgc acggcaaccg
     1201 cgatttcctg ctcggcaaac gtttcatgcg ggccgccgga gcgctgccgt tgcccgatcc
     1261 gttcgttatc accgcgttcg gcacgcgcat cgtggtggcg catggcgatg cgctttgcac
     1321 tgcggacccc gcgtatcagc gctttcgccg gtttgcgcgt aacccggttg cgcaacaact
     1381 attcttgagc ttgccgctga agttgcgctt atcgattgca gagcgcatgc gctcgaccag
     1441 cgaagacggc aggatgcgtc cggcgcaggc gaaatatgac gtgacgcgcg aagcggtggc
     1501 gcagctgttc gcgagcaccg gcacccacac gatgatccac ggccacacgc atttgcccgc
     1561 gcatcaccgg gaaacggatg gcgttcgctg ggtcatggcg gattgggaac tggatcacgg
     1621 cgagccacgc ggcggatatc tgcgtgtgga cgccgaaggt attcgagcgt tgcctctgga
     1681 gtgacctcga atgggcggct tctttcgtgc tttcgccccc ctgtcccatg cccgatggca
     1741 acccgccctt gctttcagcg ccgcgctgct tcccctttca ttgcatcgga gaggcgcttt
     1801 agatcgatga acgcagcatc ctcgacgccg ccgatcgcat ctatgcgcgt gccgagtttc
     1861 tcaagcgctg caacgatctc atccacacga tgcgcttgcg ttgacgcgtg atcgatcagg
     1921 ccgtggatgg caagcgacac cggatcgtca gcgttcggcg tgatgccgta tgcgcagaac
     1981 gccgcccgct cgccagaccc tttttgcgcg ggtttgacgg ttgccggcat gaccacgcgc
     2041 gccggattgc ccacggccgt tccgcccgcc ggaaccggct tcaccacgac cgcgttcgac
     2101 ccgatctttg cttccgcgcc gaccgtgaaa ccgccgagca ctttcgcgcc cgccccgaca
     2161 atcacgccgc gctcaagtgt tggatgccgc ttcgcgcccc gcgcgagcga cgtaccgcca
     2221 agcgtcacgc cttggtagat cgtgcagtca tcgccgattt ccgccgtttc gccgaccacc
     2281 acgcccatac cgtgatcgat gaacacccgc cgcccaagcg tcgcgccggg atggatctcg
     2341 atgccggtca ggaaacgcgc gaactgtgaa acaaaccgcg cgagccaacg ccagcctgca
     2401 cgccagcaag cgtgcgcgat ccggtgcagg actacggcat gaaagcccgg ataacacgtc
     2461 acgacttccc aggcgctgcg ggcggccgga tcgcgctcgc ggatggcggc gatgtcttcg
     2521 cggagtcgat taaacatggc agtggctctg tgggtgacct gggcgccgac tctcgaacgc
     2581 gcggctcagc acggattcgg gaatcgatag ttcgatttcc gcagattgta ggacgagccg
     2641 tggaagttcg ctgcgatgcc cccgctggca aagcggtcag tgcttgggtg ctggcgttga
     2701 tcaccggacg cgcgagcggc gaaacgcagg cagcgcgcaa ctcgtcctcg ccatagcctg
     2761 gcgggataaa accactacct ctctacgatt ttgacgcgcc cgcggtcttc ttatcgcttg
     2821 atttttagaa gaatatgctt ggcgataccc cgcaggat
//
LOCUS       DATGBK010000882         1544 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_34317, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000882 DATGBK010000000
VERSION     DATGBK010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34317"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..1206
                     /locus_tag="VKJ77_12350"
     CDS             178..1206
                     /locus_tag="VKJ77_12350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010913673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HMC46104.1"
                     /translation="MQITTIGLDIAKNVFQVHGIDAKEKVVVRKQLRRSQVIAFFAAL
                     PPCLVGMEACATAHYWARELRKLGHEVRLMPAKDVKAYLKRNKNDAADAEAICEAVRR
                     PTMRFVQIKSAEQQGQLMQHRTRDVLIRQRTQIINALRAHLAELGIVAAQGDAGVSEL
                     RAIVADDRDERLPIDARASVIVLAAQLEALQTLIGSIEKRIKMQHRSNEASQRVETIP
                     GIGVLGATAIVATVADPMIFRSGRDFAAWIGLVPRQDSTGGKQKLGPISKQGDRYLRR
                     ILVVGAIAVLRRARENPGKYPWLTQLLARRPFKVVAVALANKMARTAWALMAHGGTYR
                     APELAEAA"
BASE COUNT          315 a          440 c          523 g          266 t
ORIGIN      
        1 gaggccggcc acggaaatgg ccggtcgggc agacgatgtc tgcttcgggg ggtatagcgg
       61 aaatcgcgtc taagggccgt caggtccgag tttgatgtgg tggacggcgc ccgctcccgg
      121 catcgaagtg ccatagagtg atcgttgcaa acgaatcaca tgaggggaac cgtccaaatg
      181 caaattacca cgatcggttt ggatatcgcc aagaacgttt ttcaagtcca tggcatcgac
      241 gccaaggaga aggtggttgt gaggaagcaa ctgcggcgca gccaggtgat agcttttttc
      301 gcggctctgc cgccgtgcct tgtcggtatg gaggcctgcg ccacggcgca ttattgggcg
      361 cgcgagctga gaaagctcgg ccacgaggtg cgtctgatgc cggcgaagga cgtgaaggcc
      421 tacctcaagc gcaacaagaa cgatgccgcc gatgccgagg cgatctgcga ggcggtgcgg
      481 cgtccgacca tgcgcttcgt gcagatcaag tcggccgaac agcagggtca gttgatgcag
      541 caccgcacgc gcgatgtgct gatacgtcag cgcacccaga tcatcaacgc cttgcgggcg
      601 catctggccg agctcggcat cgtggcggcg cagggcgacg ccggggtcag cgaattgcgt
      661 gcgatcgtag ccgacgatcg cgatgaacgc ttgccgatcg atgcgcgggc gagcgtcatt
      721 gtgctggcgg cgcagcttga ggccctgcag acgctgatcg gatcgatcga gaagcggatc
      781 aagatgcagc atcgctcgaa cgaggcgagc cagcgggttg aaaccatccc gggcatcggc
      841 gttcttgggg cgaccgcgat cgtggcgacc gtggcggacc cgatgatctt ccggtcggga
      901 cgcgatttcg cggcctggat cgggctggtg ccgcgtcagg attcaaccgg gggtaaacag
      961 aagctcgggc cgatctccaa gcagggcgac cgctacttgc ggcggattct cgtcgtcggg
     1021 gcgatcgcgg tgctgcggcg tgcccgggag aaccctggga aatatccctg gctcacgcaa
     1081 ctcctggcgc ggcgaccctt caaggtcgtg gcggtggcgc tcgccaacaa aatggcgcgc
     1141 accgcctggg cattgatggc ccacggcggc acctatcggg cgcctgagct tgcggaagcc
     1201 gcgtaaaggg gctcggcgag gaagagaggt aggatatgta agcgcgttca cgaactgcag
     1261 gggtgatgaa gacattgatg cgaaacggtc gagaccgtcg atcggaaaac ccgtgatggg
     1321 tcacgcgagg aaagaacgcg tgcttttgtt tgggaccgat cagcggatca catcagggcc
     1381 agcggccaaa cggctgcact caaaggccga atacatgacc gcacccgaac gcttcgcaga
     1441 aagtcagatt cttctccctt gcaccgcggg cgccgtccat acatgaccca tctcggacat
     1501 cgcctgtgcg tcgcagcatt caatctcagc aatcatccaa gccc
//
LOCUS       DATGBK010000883         1654 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_311437, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000883 DATGBK010000000
VERSION     DATGBK010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311437"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /locus_tag="VKJ77_12355"
     CDS             <1..409
                     /locus_tag="VKJ77_12355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012436277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC46105.1"
                     /translation="TSMLVDHYTIKPAFAYRFETRDRTVVFSGDTAYYPALAEFAKGA
                     DVLVHEVMYLPALEKLMKSVDNAPTLLDHLMKSHTTTEQVGKIAAAAGVKTLVLSHFV
                     PGGDPAITDEMWAADARAHFDGQIIVGRDLQVI"
     gene            428..1477
                     /locus_tag="VKJ77_12360"
     CDS             428..1477
                     /locus_tag="VKJ77_12360"
                     /inference="COORDINATES: protein motif:HMM:NF014542.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HMC46106.1"
                     /translation="MQSAAIPITLLTGFLGSGKTTLLNRLLPQPALGRCAVVINELGA
                     IGLDHLFISTSRDETVALLENGCLCCGVRDELAATVADLLERRTRGEIPAFERILIET
                     TGLARPGPVISLLLGDVALEGRLQLDGIVTTIDAKHGAAQLARYEESRQQAAVADRLL
                     LTKAELVDAPALAELEAALEALNPGAPRIPVRNGEIDAQQLLDILTPRALRPWLRAEP
                     SPRKLLMRSATASRGAHPDIDSFCLTYSRPLPMQAFETALTVLLGYHGERILRVKGIG
                     NFIGESRPVVFHGVQQLLHEPLRLEEWPDDDHTTRLVFIVQGLARSVIEETITHFLLE
                     AGVHELAGGDAVQTG"
BASE COUNT          307 a          508 c          521 g          318 t
ORIGIN      
        1 cacttcgatg ctggtcgacc actacacgat caagccggca ttcgcttacc gcttcgagac
       61 ccgggaccgc accgtcgtgt tctccggcga cacggcctac tatccggcgc ttgccgagtt
      121 cgcgaaaggc gctgacgtac tggtgcatga agtgatgtac ctgcccgcgc tcgaaaaact
      181 gatgaagagc gtcgacaacg cgccaacgct gctcgatcac ctcatgaaga gccacaccac
      241 caccgagcag gtcggcaaga tcgctgcggc ggctggcgtc aagacgctgg tgctgagcca
      301 tttcgtgccg ggtggcgatc ccgcgatcac cgacgagatg tgggccgccg atgcgcgcgc
      361 gcatttcgac gggcagatca ttgtcggtcg cgacctgcag gttatctgag tgtcaggaaa
      421 aaccgccatg caatccgctg cgattcctat aacgctgctg accggctttc tcggttcggg
      481 caagaccacg ttgcttaatc gcctgctgcc gcaaccggcg ctgggccgtt gtgcggtcgt
      541 gatcaacgaa ctgggcgcga ttggtctcga tcatctgttc atcagcacct cgcgcgacga
      601 aaccgtcgcg ctgctggaaa acggctgcct gtgttgcggc gtgcgcgacg aactggctgc
      661 gaccgtggcc gatctgctgg agcgccgcac gcgcggcgag attcccgcct tcgagcggat
      721 tttgatcgag accacggggc ttgcgcgacc cggtccggtg atctcattgc tgcttggcga
      781 cgtagcgctt gaaggtcgtt tgcaactcga tggcatcgtg acgaccatag atgcaaaaca
      841 tggcgccgcg caacttgcac gatatgagga atcgcgccag caggcggcag tcgccgaccg
      901 gctgttgctg acaaaggctg aactggttga tgcacccgcg cttgccgagc tcgaggcggc
      961 gcttgaggcg ctgaatccgg gtgcgccgcg catcccggtg cgcaatggcg agattgacgc
     1021 gcaacagctg ctcgacatcc tgacaccgcg tgccttgcgg ccctggttgc gcgctgagcc
     1081 ttcgccgcgc aagctgctga tgcgtagcgc gacggcgtca cgcggggccc atccggatat
     1141 cgacagcttc tgcctgactt actcgcggcc gttaccgatg caggcattcg aaaccgcgct
     1201 gaccgtactg ctcggttatc acggcgaacg catcctgcgg gttaagggaa tcggcaattt
     1261 catcggcgaa tcgcggcctg tggtattcca tggtgtgcag cagttgctgc atgagccgtt
     1321 gcgccttgag gagtggcccg acgacgatca cacgacccgg ctcgtgttca tcgttcaggg
     1381 tcttgccagg tcggtgatcg aggaaacgat cacgcatttt ctgctcgaag caggggtgca
     1441 cgaactggcg ggaggcgatg cagtgcaaac gggatgatcc cgaccgtgat tgggcgcgtg
     1501 ccgcgcaccc gcgacggcga ctgatcgcga caatcaatct actgctcggc gacaacagcg
     1561 cgctgttcac gaacaagccg cgctttccgc atagtaccga ttcggtgcgg gaaagacgcc
     1621 ggccatcact tcgatcagga atggcccgtc gtat
//
LOCUS       DATGBK010000884         1696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_242004, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000884 DATGBK010000000
VERSION     DATGBK010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242004"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            335..1078
                     /locus_tag="VKJ77_12365"
     CDS             335..1078
                     /locus_tag="VKJ77_12365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HMC46107.1"
                     /translation="MPRSITSLELLRSVTLSGLVQDEILRRIKTGELEAGMKLNEMDL
                     AEHLKISRSPVREAFRALEEAGLVLLEKNRGVYIREISDTETAELYEVRAGLDEMAGR
                     QLALKITDTQLQELHAMLDQLEASSIHGELNNYFTLNIAFHDRLVELSGNATMLGLYR
                     QVVNRMHLLRRRGFSIAGSSQASHTEHRRILDALARRDPEAVAIAMRQHVQAGFQRAI
                     SAHSAEDAAPATGVVAAKTARAILVDGPR"
     gene            1159..>1696
                     /locus_tag="VKJ77_12370"
     CDS             1159..>1696
                     /locus_tag="VKJ77_12370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HMC46108.1"
                     /translation="MSVETPEGHGIIGEKLGAWIADGQASTLPAQTVEIACLLLLDVT
                     GLCIAGRDEDYIRATLQATDPGGACTALGHANSFNAFDAALINGTAAHGEDYDDTFEG
                     GPVHSGAVVVPAVLAACEREGLGGGALLRGIAVGAELMCRLSLVAPRAIHTAGFHPTA
                     VIGALAAAGGVAAALRLNA"
BASE COUNT          321 a          497 c          551 g          327 t
ORIGIN      
        1 gccgcgacgc gccgaccgca cagcccatcc agttgacgaa agtgcgcacc gcatggtcgc
       61 gcacggcttg cggcaagttg tcgggcgttg cgttgacgag gtagcgcgca agggtttggg
      121 tgacgcggtc ggcttgggtc atcggatcgt taaggggtag agaaggcatg aaagggatcg
      181 ctggcggcac aggttgcatt atccatattg tcgacaatac acaaatagtg gaagattcca
      241 gttgcgcgat gatattgcag atagtatgtt gtcgacaata ttcaagacgc aatgtgcgta
      301 gtacactgtg agctttccag atacaggtcc gtccatgccc cgttccatca cttcgctcga
      361 gttgcttcgt tcagtcacgc tgtccggtct cgtgcaggat gaaatcctcc gtcgcatcaa
      421 gactggcgaa cttgaggccg gcatgaagct caatgagatg gatctcgccg agcatctgaa
      481 gatcagccgt agtccggtgc gcgaggcgtt tcgcgcgctc gaggaagcgg gtctcgtgtt
      541 gctggaaaaa aatcgcggcg tctacatccg cgagatttcg gataccgaaa ccgccgaact
      601 ctatgaagtg cgcgcggggc tcgacgagat ggccggccgc cagttggcgt tgaagataac
      661 cgacacgcag ttgcaggaac tgcatgcgat gctcgatcag ctcgaagcca gctctatcca
      721 cggcgagctg aacaattact tcacgttgaa tattgcgttc cacgaccggc tggtcgaact
      781 gtccggcaac gcgacgatgc tcggtctgta ccggcaggtg gtcaaccgga tgcatctgct
      841 gcgccggcgc ggcttttcga ttgccggcag ctcgcaggcg tcgcacaccg aacaccggcg
      901 gattctcgac gcgctcgcgc gccgcgatcc cgaagccgtt gcgatagcga tgcgtcagca
      961 cgtgcaggcg gggttccagc gcgcgatcag tgcgcacagc gcggaagacg ccgcacccgc
     1021 tacgggtgtc gttgctgcca aaacggcgcg agccatcctt gttgacggtc cgcgctagca
     1081 ctcgcagcgc cgcacgcttt gcacgcgcat gacacggaga cgcacgcatt tcattaccga
     1141 ctcggagtgg tcacccgtat gagcgttgaa acaccagaag gacacggaat catcggtgaa
     1201 aaactcggtg cctggatcgc cgatggccaa gcgtcgacgt tgcctgctca gacggtcgaa
     1261 atcgcctgtc tgttgctgct cgatgtgacg ggtttgtgca tcgctggccg cgacgaagac
     1321 tacatccgcg cgacgctgca ggccaccgac ccgggtggtg cctgcacggc gctcggccac
     1381 gcgaacagtt tcaatgcgtt cgatgcggcg ctgatcaacg gtaccgccgc gcacggtgaa
     1441 gactacgacg atacctttga gggcggtcca gtgcattcgg gtgcggtggt cgtgcctgcc
     1501 gtgctcgcgg cgtgcgaacg cgaaggactc ggtggcggcg cgttgttgcg cggcatcgcg
     1561 gtcggcgcgg aactgatgtg ccggctgagt ctggtcgctc cgcgcgcgat ccacaccgcc
     1621 gggttccatc cgaccgcggt gatcggcgca ctcgcggcag cgggtggcgt cgcggctgcg
     1681 ctgcgtctga atgcgc
//
LOCUS       DATGBK010000885         1951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_10356, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000885 DATGBK010000000
VERSION     DATGBK010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10356"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            413..1378
                     /locus_tag="VKJ77_12375"
     CDS             413..1378
                     /locus_tag="VKJ77_12375"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HMC46109.1"
                     /translation="MSPKGRWTLIAVLSVVELALLGAMLHSVGLAGGASEADGRRFMM
                     GAPVFASTPSQTFEKTFDNMSATPSVYVDDNDAELTLTVKSGSSVSVREQTSHGGWMH
                     RSGGKLDVSQTGDHLRIVRSDETLTMMFGSLHRTLQLVVPPGTHLEVANAGKIDVTGL
                     RENVLLHSDNGAIYVHDHRAEITATSSNGRIELHDVVAAAVEATSDNGRIVLDNVRAD
                     ALAVKADNGRITGSQVLTSGGSIIASNGRVLLGLAQGSDITVTASAASGHVRAESPFT
                     FDAVPSSDDDDDGKPRTLRIGNGTGKLAVSTDNGSITISQGEVSL"
     gene            1375..>1951
                     /locus_tag="VKJ77_12380"
     CDS             1375..>1951
                     /locus_tag="VKJ77_12380"
                     /inference="COORDINATES: protein motif:HMM:NF039701.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6249 domain-containing protein"
                     /protein_id="HMC46110.1"
                     /translation="MNGTDVGALSVLLIFGGPIAAIIIMRVLKHRERLEMIRHGMVPP
                     AYDDRTTRRWYRQNPGMAPPPNVPPPMAGPYPGFTPNMVDQETPERSLQKGIRMALVG
                     FAIFIGLRLGTGSGPFLLLGLIPMFIGIAQIIIAVLSGAQINIPGSFSAQATMPPPGA
                     APPYPGARPQPQSQASPYNPGPEPPVHNGFEE"
BASE COUNT          377 a          608 c          609 g          357 t
ORIGIN      
        1 tccttggctt cctcggtatc gtgcagtgtg cgtaaggcga ggtggtaaac cgcgcgctcg
       61 tagcgctcga cgagcgtgcc gaaggcctcg ccgcggccgg cgaccgcggc tgcaatgagc
      121 gcgtcgtcgg ttaacgccgg cgcttccacg agcctccgcc ctctgagcgg tgcgaccaaa
      181 agcgcaactg ccacaacgtc cgcatgtacg cgcgcgacac gctgatgttt cggtcccgag
      241 cgcgaaacat ggcgctgcgc ggtgcgtaca tggggcagtt cactcgtcga aggattcgct
      301 tgacatggtc aaacctcagc cgttcccact tccgttcccc gaccgccgcg tcccggcgcc
      361 ggggcctcgc gtggtcacga tgtttcccgg gtggggcccg aagatttaag ccatgtcacc
      421 caaaggacgc tggacgctta tcgccgtcct ctcggttgta gaactcgcac tgctcggtgc
      481 gatgctccac tctgtcggac tggccggcgg ggcgtcggaa gcagacggac gacgctttat
      541 gatgggcgcc ccggtctttg catctacgcc cagccaaacg ttcgaaaaaa cattcgataa
      601 catgagcgcg acgccatcgg tctatgtaga tgataatgat gcggaactga cgctaacggt
      661 caaatcggga tcgtcggtgt cggtacgcga gcaaacatcg cacggcggct ggatgcatcg
      721 cagcggcggc aaactcgatg tatcgcaaac cggcgatcac cttcgcatcg tgcgcagcga
      781 cgaaacgctg acgatgatgt ttggcagctt gcaccgtacc cttcaactcg tcgtcccacc
      841 gggcacgcac ctcgaagttg caaacgccgg caagattgac gtgacgggct tgcgcgaaaa
      901 tgtgctgctg cacagcgaca acggtgcgat ttacgtgcac gatcaccgcg cggaaattac
      961 ggcgacgagc agcaacgggc gaattgaatt gcacgacgtt gtggccgctg cggttgaagc
     1021 aacgagcgat aacgggcgta tcgtccttga taacgtgcgt gctgacgcgc tggcggttaa
     1081 ggcagacaac ggtcgcatca ccggctcgca agtcttgacg agcggcggaa gtattattgc
     1141 aagtaacggg cgcgttttgc tcgggcttgc gcaggggagc gatattacgg taacggcaag
     1201 cgcggcgtcc ggccacgttc gggcggagtc gcctttcacg ttcgacgctg tgccgtcaag
     1261 cgacgatgac gatgacggaa aaccgcgaac gctgcgcatc ggcaacggaa cgggcaaact
     1321 cgcggtttcc actgacaacg gatcgatcac tatcagccaa ggggaagtat cactatgaac
     1381 ggcaccgacg tcggagcact ctccgtattg ctcattttcg gtgggccgat tgcggctatc
     1441 attatcatgc gcgtgctcaa gcaccgcgag cggctggaga tgatccgcca cgggatggtg
     1501 ccgcccgcat atgacgatcg gaccacgcgc cgctggtatc gtcagaatcc cggaatggcc
     1561 ccgccgccga atgtgccgcc gcctatggcc gggccctacc cgggcttcac gccgaatatg
     1621 gtcgaccaag aaacacccga gcgcagcttg caaaagggca tccggatggc cctggtgggc
     1681 ttcgcgatct tcatcggcct gcggctgggt acggggtcgg gtccgtttct gttgctgggt
     1741 ctgatcccga tgttcatcgg aatcgcccaa atcatcatcg cggttttgtc gggtgcgcag
     1801 atcaacatcc cgggcagctt cagtgcgcag gcgaccatgc cgccgcccgg cgcagcgccg
     1861 ccgtaccccg gagcccgccc ccagccgcag tcccaggcct cgccctataa ccccggcccg
     1921 gagccgccgg tccacaatgg gttcgaggag c
//
LOCUS       DATGBK010000886         3381 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_219070, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000886 DATGBK010000000
VERSION     DATGBK010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3381
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219070"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..526)
                     /locus_tag="VKJ77_12385"
     CDS             complement(<1..526)
                     /locus_tag="VKJ77_12385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC46111.1"
                     /translation="MMLEVEGVSAYAYTGGHAFESDRPVAVFVHGAQHDHSVWALQTR
                     YFAHHGLSVLAVDLPGHGRSAGPARRSIAALADWLVALLDAAKVEEAMLIGHSMGSLI
                     ALDCAARYSSRVTRLALLATAFPMTVSDALLDAALNREPDAIDMVNQWSHSSIAAKPS
                     CPAPGFWLHGANQRL"
     gene            complement(523..1848)
                     /locus_tag="VKJ77_12390"
     CDS             complement(523..1848)
                     /locus_tag="VKJ77_12390"
                     /EC_number="2.5.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase"
                     /protein_id="HMC46112.1"
                     /translation="MPANRFDTLVLHAGAAPDPTTGARATPIYQTTSFSFRDTDHAAS
                     LFNMERSGHVYSRISNPTVAVFEERVAALEGGVGAIGTASGQAALHLAIATLMGAGSH
                     VVASSALYGGSHNLLHYTMRRFGIDTTFVPPHDPDAWRAAIRPNTRLLFGETLGNPGL
                     DVLDIETIADIAHSNHVPLLVDSTFTTPYLLRPFDHGADFVYHSATKFLGGHGTTIGG
                     VLVDGGTFDFTATDLFPEFTEPYDGFHGMVFAEESTVAPFLLRARREGLRDFGACLHP
                     QAAWQLLQGIETLPLRMDRHVANTRKVVEFLLAHPAVEGVAYPELDSHRDYALAKRLL
                     PRGAGAVFSFDLRGDVAAARRFIEALTLFSHLANVGDARSLVIHPASTTHFRMDAAAL
                     AAAGIAPGRIRLSIGLEDPDDLIDDLKRGLKASQKASPTVGRSSAGSRT"
     gene            2116..2568
                     /locus_tag="VKJ77_12395"
     CDS             2116..2568
                     /locus_tag="VKJ77_12395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HMC46113.1"
                     /translation="MRVSDILNVKGNALFTVTPDTPLHEAINTMASHDIGSLVVIEYG
                     DLAGMLTFREIILTLSENGGSVGTSTIRKVMDDHPITCTPETDVNEVRRMMLEHHVRY
                     LPVMEKNVLMGVISFYDVAKAVVEEQGFENKMLKAYIRDWPEQQEEAR"
     gene            2804..>3381
                     /locus_tag="VKJ77_12400"
     CDS             2804..>3381
                     /locus_tag="VKJ77_12400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46114.1"
                     /translation="MSETSASPRAKKAGAQHGDGQFRLLRERRFAPFFWTQFLGALND
                     NVFKVGFTSLVTFQAARFSGVDPKTAAFMISAIFIIPFVLFSATSGQVADKYDKATLT
                     RFVKTFEIVVMLIGGAGFMSHSAPLLYVCTFLMGVHSTVFGPVKYAYLPQHLQPSELV
                     GGNGLVEMGTFVAILIGTIFGGAAAGLTEHGA"
BASE COUNT          639 a         1006 c         1111 g          625 t
ORIGIN      
        1 tcaggcgctg gttggcgcca tgcagccaga agcccggcgc ggggcacgac ggttttgcgg
       61 cgatcgacga gtgcgaccac tggttgacca tgtcgatggc gtcgggttcg cgattgagcg
      121 cggcatcgag caacgcgtca gacacggtca tcggaaaggc ggtcgcgagc agcgcaagac
      181 gggtgacacg cgaggaatag cgcgcggcgc aatcgagtgc aatcagcgag cccatgctgt
      241 ggccgatcag catcgcctct tcgaccttgg cggcgtccag taacgcgaca agccagtccg
      301 cgagcgcggc gatgcttcgc cgtgccgggc ccgcgctgcg gccgtgaccg ggaaggtcga
      361 cggcgagcac gctcaggccg tgatgggcga agtagcgtgt ctgcagtgcc cagacgctgt
      421 gatcgtgctg tgcgccgtgc acgaagaccg ccaccggacg gtccgactcg aacgcgtggc
      481 cgccggtgta ggcgtaggca gagacgccct cgacttcgag catcatgtgc ggctcccggc
      541 gctgctccgg ccgacagtgg gtgaagcctt ctgcgatgcc ttgagaccgc gtttgaggtc
      601 atcgatgaga tcgtcgggat cttccaggcc gatcgacagc cggatacgtc ccggtgcaat
      661 gcccgctgcg gcgagggcag cggcgtccat gcggaaatgc gtggtcgaag cggggtgaat
      721 gacgagcgag cgtgcgtcgc caacgttcgc aagatgcgag aacagcgtca atgcttcaat
      781 gaagcgccgc gccgccgcca cgtcgccgcg caggtcgaag ctgaacacgg cgcccgcgcc
      841 gcgcggcagc aggcgtttgg cgagcgcgta gtcgcgatgg ctgtcgagtt ccggataagc
      901 cacgccttcc acggcagggt gagcgagcag gaattcgacc accttgcggg tgttggcgac
      961 gtgccggtcc atccgcaacg gcaaggtttc gatgccctgc aagagttgcc atgcagcttg
     1021 cggatgcaga caggctccga agtcgcgcaa cccctcgcga cgggcgcgca gcaggaacgg
     1081 tgcaacagtg ctttcttcgg cgaagaccat gccgtgaaat ccgtcgtagg gttcggtgaa
     1141 ctcggggaag agatcggtag ctgtgaagtc gaacgtgccg ccgtccacca gcacgccgcc
     1201 aatcgtcgta ccgtggccgc ccaggaactt ggtcgccgag tggtagacga agtcggcgcc
     1261 atggtcaaac ggtcgaagca aatagggcgt ggtgaaggtc gaatccacca gcagcggtac
     1321 gtggttcgaa tgcgcgatgt ccgcgatggt ctcgatgtcg agaacatcga gaccagggtt
     1381 tcccagcgtt tcgccgaaca gcaggcgcgt gttgggccgg atggctgcgc gccaggcgtc
     1441 cgggtcgtgc ggcggcacga acgtggtgtc aatgccgaag cgccgcatcg tgtaatgcag
     1501 caggttgtgc gagccgccgt acagcgcgct cgatgcaacc acgtgggacc ccgcgcccat
     1561 cagcgtagcg atcgccagat gcagcgcggc ctgtccactg gccgtgccga tcgcccccac
     1621 gccgccttcc agcgcggcta cgcgctcctc gaatacggcg acggtcgggt tcgaaatgcg
     1681 cgaatagacg tgtcctgagc gctccatgtt gaagagcgac gcagcgtggt cggtgtcgcg
     1741 aaacgagaaa gacgtagtct ggtagatcgg cgtggcgcgg gcgccggtgg tagggtcggg
     1801 cgcagcgccg gcgtgcagca cgagcgtgtc gaagcggttg gcgggcatcg tgggcgggct
     1861 accatgggga aaggagtcat ttatcgtaac atcgggtgtg gcgcgacaaa cttggggtag
     1921 acgccagcgt cggcgtttgc accatgcggc gccatgccgc gtaagggcag ccgtggcgcg
     1981 gcgtgcgccg acccggtgca aaagcccgcc ccgcttggct tttgcagacg aaacacgggg
     2041 ttcttgcgcg ctttcttttt aactgccttt ccgctaggat cgacagatat tcaggctttt
     2101 cgcgaggaga caatcatgcg agtcagcgac attttgaacg tcaagggcaa cgcgctcttc
     2161 acggtaacac ccgatacgcc gctgcacgaa gcgatcaaca caatggcgtc acacgacatt
     2221 ggttcacttg tggtgatcga gtacggcgat ctcgccggca tgctgacgtt ccgcgagatt
     2281 attctcacgc tgagcgagaa cggcggcagc gtgggcacct ccactatccg caaggtcatg
     2341 gacgaccacc ccatcacgtg tacgccggaa acggacgtga acgaggtgcg ccggatgatg
     2401 ctggagcatc acgttcgtta cctgccggtc atggaaaaga atgtgttgat gggcgtgatt
     2461 tctttctacg acgtggccaa ggccgtggtg gaagagcagg gtttcgagaa caagatgctc
     2521 aaggcctata tccgcgactg gccggagcag caagaagaag cgcgttgatc gggggtgtcg
     2581 cacgactagc gcgtttagcg ggattgacct ggctgcacga gctacaccac tccggtcgaa
     2641 gcgcatcaca acgtcacgca caaaatgcgc gcccgagcgg cgcgcttttt tttcgcccct
     2701 tcgggtccct cccgttaagt agcgggtccg gccatcacgg ttgagcctgt caccgtcagg
     2761 ctcaacagat caccactctc tcagctacca actccaataa tccatgagcg aaacatccgc
     2821 atcaccccgc gcgaaaaagg ccggcgccca acatggcgac ggtcagttcc gcctgttgcg
     2881 tgagcgtcgt ttcgcgccgt tcttctggac gcagtttctc ggcgcactca acgacaacgt
     2941 cttcaaggtc ggctttacgt cgctggtcac gtttcaggct gcacgctttt cgggtgtcga
     3001 tccgaaaacc gccgctttca tgatctccgc catctttatc atcccttttg tgcttttttc
     3061 cgcgacatca ggccaggtcg ccgataaata cgacaaggcc acgctcacgc gcttcgtgaa
     3121 gacgttcgaa atcgtggtga tgctgatcgg cggcgcgggt ttcatgtcgc acagcgcgcc
     3181 cctgctttac gtctgcacgt tcctcatggg tgtgcattcg accgtgttcg gaccggtgaa
     3241 atacgcgtat ttgccacagc atctccagcc atcggaactt gttggcggca atggcctcgt
     3301 cgaaatgggg acgttcgtcg ccattttgat cgggacgatc tttggcggcg cggcggccgg
     3361 gttgaccgag cacggcgcca t
//
LOCUS       DATGBK010000887         1536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_242082, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000887 DATGBK010000000
VERSION     DATGBK010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242082"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..347
                     /locus_tag="VKJ77_12405"
     CDS             <1..347
                     /locus_tag="VKJ77_12405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46115.1"
                     /translation="GHSLCYAPQASLFPELFPARVRCSGIALIWQIGSLIGSGVLGLV
                     AVKMLQMTGGSSVGLIVYVMALGIVSTLCIYLLPETAPLRRGGDLHDWGTPALATSPR
                     EAHSSPVFAARH"
     gene            394..1431
                     /locus_tag="VKJ77_12410"
     CDS             394..1431
                     /locus_tag="VKJ77_12410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-idonate 5-dehydrogenase"
                     /protein_id="HMC46116.1"
                     /translation="MLAAVLHEPKRLSIDEIDAPQPKPGQVQIRVRAGGICGSDLSYY
                     FKGKSGDFAVREPFVLGHEVAGEIAALGEGVSGLHVGQRVAVNPGLNCGECRFCVKGM
                     TNHCLNMRFMGSASTFPHMQGMFRQYIAVAARQCVPVPDALDFAQASMAEPLAVALHA
                     LRHAGSLVGAQVLVIGCGPIGCILLSVARRAGAHRLVALDLADKALQMAVTLGADQTV
                     LATDQAQVEAWSQSRGTFDVVIEASGSPAGLDTALRAARAGATVIQVGNLPAGQSPVA
                     ANLVMAKELRYQGSFRFTDEYAVAAEEIATGKIDLSPLMTHVFPLADANHAFEVAHDR
                     NQSMKVHLQFD"
BASE COUNT          264 a          455 c          469 g          348 t
ORIGIN      
        1 tcggtcacag tctttgctat gcgccgcagg cgtcgctctt tcccgagctc tttccggcgc
       61 gcgtgcgttg cagtggtatc gcgttgatct ggcagatcgg ctcgttgatc ggcagcggcg
      121 tacttggact cgtcgccgta aagatgcttc agatgacggg cggcagctcc gtcgggctga
      181 ttgtctacgt gatggcactt ggcattgttt cgacgctgtg tatttatctt ttgcccgaaa
      241 ccgcaccttt gcgtcgcggc ggtgatcttc acgactgggg tacgcctgca ctcgcgacgt
      301 ctccccgcga agcgcattca tcccctgttt tcgctgcgcg ccactagccc aagcgttgtg
      361 cttcggcacg cacactattc aacggagctt cttatgcttg cagccgtcct tcacgaaccg
      421 aagcgcctga gtatcgacga aatcgatgcg cctcaaccaa agccgggtca ggttcagatc
      481 cgtgtgcgcg caggggggat ttgcgggtca gacctgtcgt actacttcaa gggcaagagc
      541 ggcgatttcg cggtccggga accgttcgtc ctcggtcatg aagtcgcagg tgaaatcgcc
      601 gcactgggcg agggtgtaag cggtttgcac gtcggtcagc gtgttgccgt gaacccaggt
      661 ttaaactgcg gcgagtgccg gttttgcgtg aagggcatga ccaatcattg cctgaacatg
      721 cgcttcatgg gcagcgcctc gacgtttcct cacatgcagg gcatgttccg ccaatacatt
      781 gcggttgccg cgcgccaatg cgtgcctgtg cctgatgcac tcgacttcgc gcaggcgtcg
      841 atggccgaac ccctcgccgt tgcattgcac gcgcttcggc acgcgggatc gctggttggc
      901 gcccaggtac tggtgatcgg ctgcggacct atcggctgta ttttgctatc ggttgcgcgg
      961 cgtgccggag cgcatcgtct cgttgcgctc gacctcgccg acaaagcatt gcagatggcc
     1021 gtcacgctcg gcgccgatca gaccgtactc gccacggacc aggcacaggt cgaagcgtgg
     1081 tcccagtcgc gcggcacctt tgacgtcgtc atcgaagcat ccggcagccc cgccgggctc
     1141 gataccgcac ttcgtgctgc gcgtgcaggg gccaccgtga tccaggtggg aaacttgccg
     1201 gcagggcagt cgccggtcgc ggccaatctc gtgatggcga aggaattgcg ttatcaggga
     1261 tcgttccgtt tcactgatga atacgcggtc gccgctgaag aaatcgccac cgggaagatc
     1321 gacctgagcc cgttgatgac gcatgtcttt ccgctcgcgg atgcgaacca tgcgttcgaa
     1381 gtggcgcatg accgtaacca gtcgatgaag gtgcatctgc agttcgactg aatccctatc
     1441 attgcattgc ccgaacgtcc gatcacaaag aggcgtattc caggagacat tcatgttcag
     1501 aagccagcgc tggttcgtgg tcggtttgct atttct
//
LOCUS       DATGBK010000888         2351 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_311542, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000888 DATGBK010000000
VERSION     DATGBK010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311542"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..1283
                     /locus_tag="VKJ77_12415"
     CDS             108..1283
                     /locus_tag="VKJ77_12415"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HMC46117.1"
                     /translation="MQERQGPKQGCESAFDAQEYAGRVARTRAALAKAGIDVMIITGP
                     ENIFYLTGQQTPGYYTFQALLLPVDGEPVFVIRQLEYFNFIANTFIADAQVYSDGEDP
                     IDVLVNVVQKQGWAGKRVAIDKRGWFLPIAVYETLTSKLGTIADGARVIEQLRAVKSA
                     AEIGKIATAAGYVDAGMRAGLVAVRPGATENTLVAAMMSEAILAGSEYVGMEPLVSAG
                     PRTGVPHGTWRRRPLDADGPAFLEMAACHDRYHAALMRSAWLGKPRADALDMEKVCQA
                     ALQAALDALRPGEPCEAPHLACQRVIDQAGYTDNFKKRTGYSIGISFAPDWGEGAILS
                     LYTGVKTPLEPGMTFHIPPALRIYGEFTVGVSETVVVTETGHRVLGSIARPLLQVDA"
     gene            1316..2239
                     /locus_tag="VKJ77_12420"
     CDS             1316..2239
                     /locus_tag="VKJ77_12420"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HMC46118.1"
                     /translation="MKDMIECRERLKGIFNITVTPFTADGSFDYTGLAENIERVIALG
                     FDGLLIGGTYGEFPAMSTDERATLFRRSMEIAGDRVPVMLCSASSDARVVRELTQLAG
                     DLGGLPMVTPPFVSEVTDDQIVAFFRDMAPLSRTGVLIYNAPGIGITLSPSIIERLAD
                     IDGVVGLKQGDLTPTTIDQIANRVGGRLRLFCASDLAFLGPMMAGFDGISSTNSGALP
                     ELILASYRAIERGDAHAARDLHRLWYGFRAVARTYGQPQAVKAAMNLRGFTGGFVRSP
                     LRDLGGKALDDVHAAMRALVSEPRSGIGLVA"
BASE COUNT          437 a          749 c          724 g          441 t
ORIGIN      
        1 ccttatctac cagcgtggcg cggtgtcgtc cgccgatgca cctggccttg gcattacgtt
       61 cgacatgggc ctcacgcaat tgattaaaac tattacggag aactgatatg caggaacgac
      121 aaggtccgaa acagggctgc gaatccgcgt tcgatgcgca ggaatacgct ggccgggtcg
      181 cacgcacgcg ggccgcgctc gcgaaggctg gcatcgacgt gatgatcatc acgggtcccg
      241 agaacatctt ttacctgacc ggccagcaaa cgcccggcta ctacacgttc caggctctgc
      301 tgctgcctgt cgacggcgaa ccggtgttcg tgatccgcca actcgagtat ttcaacttca
      361 tcgcgaacac cttcattgcc gatgcgcagg tctacagcga cggcgaagac cccatcgacg
      421 tgctggtcaa cgtcgtgcaa aagcaaggct gggcgggcaa gcgcgtggcc atcgacaaac
      481 gtggctggtt cctgccgatc gccgtgtatg aaacgctcac atcgaagctc ggcacgatcg
      541 cggacggcgc acgcgtgatc gagcaattgc gtgcggtgaa gtcagcggca gagatcggca
      601 agattgcaac cgcggcgggg tatgtggacg ctggcatgcg cgcggggctt gtcgcagtcc
      661 ggcccggggc gacagaaaac acgctggtcg cagccatgat gtccgaagca atcctggcgg
      721 gttcggagta tgtcggcatg gagccgctcg tgtcagcggg cccacgtacc ggggtgccgc
      781 acggcacatg gcggcgccgg ccgctcgacg ccgacggtcc cgcgttcctc gagatggctg
      841 cctgccacga ccgctatcac gccgcgttga tgcgttcggc gtggctcggc aagcctcgtg
      901 cggacgcgct ggacatggag aaggtttgcc aggccgcgct gcaagctgcc ctcgatgcac
      961 tccgccccgg cgagccctgc gaagcgccgc acctggcgtg tcaacgcgtg atcgaccagg
     1021 ccggttacac cgataacttc aagaaacgca ccgggtattc gatcggcata tcgttcgctc
     1081 ccgactgggg cgaaggcgcg atcctcagcc tctacaccgg cgtaaagaca cctctcgaac
     1141 ccggcatgac cttccatatt cctcctgcgc tgcggattta tggcgagttc acggtcggcg
     1201 tcagcgaaac ggtggtcgtg accgagacgg ggcatcgcgt gctcggctcc atcgcccggc
     1261 ccttgctgca ggtcgacgcc tgatcgacat ccctaatcct gacggagtgt atgaaatgaa
     1321 agacatgatc gaatgccgtg aacggctcaa agggatcttc aatatcaccg tgaccccctt
     1381 caccgccgac ggttcgtttg actacaccgg actcgcggaa aacattgagc gcgtgatcgc
     1441 gctgggcttc gatggtctgc tgatcggcgg tacctacggc gagttccccg cgatgtccac
     1501 cgacgaacgc gccaccctgt ttcgtcgctc catggaaatt gccggagacc gcgtcccggt
     1561 gatgctctgc agcgcatcgt cggacgcacg cgtcgtgcgc gaacttacgc aactagccgg
     1621 tgatctgggc ggcttgccga tggttacgcc gcccttcgta tccgaagtca cggacgacca
     1681 gatcgtcgcg ttcttccgcg acatggcgcc cctctcccgc accggcgtgt tgatctataa
     1741 cgcgccgggc attggcatca cgttgtcacc ctcgatcatc gagcgtctcg ccgatataga
     1801 cggcgtggtc ggcctgaagc agggcgacct gacacccacc actatcgacc agattgcgaa
     1861 tcgcgtaggc ggccgcctgc ggctcttctg tgcgtctgac ctcgctttcc tcgggccgat
     1921 gatggcgggt ttcgacggca tcagttcgac caacagcggc gcattgccgg agttgatcct
     1981 tgcaagttac agggccatcg aacgcggcga cgcacatgcc gcgcgcgacc tgcatcgcct
     2041 gtggtacggc tttcgcgccg tcgcacgcac atacggacaa ccgcaagctg taaaggccgc
     2101 catgaacctc cgcggattca ccggtggctt cgtgcgctcg ccgctgcggg acttgggggg
     2161 caaggcgctc gacgacgtgc acgctgccat gcgggcactg gtgagcgaac cacgcagtgg
     2221 tatcgggctc gttgcataac gcttcaggaa caaaggatcg acatggcatt gaatcaactc
     2281 gccgcgcgca tgagccgcgt gcggccttca cctactgctg cgatttccga caaggttcgt
     2341 gcgttgcttg c
//
LOCUS       DATGBK010000889         2445 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_149098, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000889 DATGBK010000000
VERSION     DATGBK010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149098"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..804)
                     /locus_tag="VKJ77_12425"
     CDS             complement(<1..804)
                     /locus_tag="VKJ77_12425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC46119.1"
                     /translation="MTPGDAIEADYTQLEYVHRRHWGRYIASAVILAIVVYIGLAFAH
                     GQIEWRYVARFLTAKSILTGLANTIVMTVLAMALGVALGVVTAIMRLSTNPVLQAVAQ
                     AYVWLFRGTPVILQLLLWFNLALVFPSIGVPGLFEFRTVDVMTPFLAALLGLGINQGA
                     YTSEVVRAGLLSVDTGQYEAAKSIGMPRLQALRRVILPQAMRVIVPPIGNELVGMVKL
                     TSLASVIQYAEMLHNAENIYYANARVIELLMVAGIWYLVVVTVLSFMQSR"
     gene            complement(819..2252)
                     /gene="argH"
                     /locus_tag="VKJ77_12430"
     CDS             complement(819..2252)
                     /gene="argH"
                     /locus_tag="VKJ77_12430"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011661327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HMC46120.1"
                     /translation="MNTTDTTERLWGGRFKSGPSLALENLSRSDPSFFRLAPYDLAGS
                     RAHANELKRAGILTADELQQLLDAMQQIETEFVAGDLSPILADEDVHTFLERELTQRL
                     KAIGGKLRAGRSRNDQAANDLRLYLRDKARKLALSVIELQHALVEQAEAHVETIVAGF
                     THLQPAQPIVFAHQLLAHAQSIYRDVDRLVDWDRRSARSPLGAAALAGSAICRRPELS
                     AAELGYDGPCENSIDAVASRDHVAEFVFIASMLSVNLSRLSEEVILWTSRQFGWVVLD
                     DGYATGSSIMPQKKNSDIAELTRGKAGRLIGDLSGLLATLKSLPLAYNRDLAEDKIAA
                     FDCIDTLELVLPAMAGMIRTMRVNVDEMRRQAPLGFTLATEVADWLALRGVPFSEAHE
                     ITGALVQACEEQGIELSEVSAATLTKVDARLDPAVLDHVTLDAAVAARSGFGGTAPVR
                     VAEQITRLQTALDKQLAWATSYGGPTC"
BASE COUNT          487 a          761 c          730 g          467 t
ORIGIN      
        1 ccgcgactgc atgaacgaca acaccgtcac caccacgaga taccagatgc ccgcgaccat
       61 cagcagctcg atcacccggg cgttggcata gtagatgttc tccgcgttgt gcagcatctc
      121 cgcgtactgg atcacgctgg cgagcgaagt gagcttgacc atgccgacca gttcattgcc
      181 aataggcggc acgatcacgc gcatggcctg cggcaggatc acgcggcgca gcgcctgcag
      241 ccttggcatg ccgatagact tcgccgcttc gtactggcca gtgtcgacag agagcagccc
      301 tgcgcgcacc acttccgatg tatacgcgcc ctggttgata ccgagcccaa gcaatgcggc
      361 gaggaacggc gtcatgacat cgacggtgcg aaactcgaag agaccgggta cgcctatcga
      421 cggaaacacc agcgcgaggt tgaaccacag cagcaattgc aggatcaccg gcgtgccgcg
      481 aaacagccat acgtaggctt gcgcgaccgc ctgcagcacc ggattggtcg acagccgcat
      541 gatcgcggtg acgacaccca gggcgacgcc caatgccatc gccagcaccg tcatcacgat
      601 ggtgttggcg aggccggtga ggatcgattt agccgtcagg aagcgggcga cataacgcca
      661 ttcgatctgc ccatgcgcga acgcgagccc gatataaacc acgatcgcga gaatcacggc
      721 cgacgcaatg tatcgccccc aatgacgtcg atgcacgtat tccagttgcg tgtagtctgc
      781 ttcgatcgca tcgcccggtg tcatgtcctg gtaagcgctc agcatgtcgg tccaccgtat
      841 gaagtggccc atgccagttg cttatcgagc gccgtttgca aacgcgtgat ctgctcggcc
      901 acacgcacgg gtgcagtgcc gccaaaaccg ctgcgcgcgg ccaccgctgc gtcgagggtc
      961 acatggtcca gcactgcggg gtccagcctt gcgtcgacct ttgtcaacgt cgcggccgat
     1021 acctcggaga gctcgatccc ctgctcctcg caggcctgca ccaacgcgcc ggtgatctcg
     1081 tgcgcttcgc tgaatggcac gccgcgcagc gcgagccagt cggcaacttc agtggcgagc
     1141 gtgaacccga gcggcgcctg acggcgcatt tcatccacgt tcacgcgcat cgtgcggatc
     1201 atgccggcca tggcgggcag cacgagttcg agggtatcga tgcaatcaaa cgccgcgatc
     1261 ttgtcttccg cgagatcgcg gttataagca agcggcagcg acttgagcgt ggcaagcaag
     1321 ccgctcaggt cgccgatcaa ccggccggct tttccccgtg tcagctcggc gatatccgag
     1381 tttttcttct gcggcatgat cgagctgccg gttgcataac cgtcgtcgag cacaacccag
     1441 ccgaactggc gcgaggtcca gagaatgact tcttccgaga gccgcgacag gttcaccgac
     1501 agcatgctcg cgatgaacac gaactccgca acgtggtcgc gcgaggcgac ggcatcgatg
     1561 gagttttcac acggaccgtc atagccgagt tccgccgccg acaactccgg ccgtctgcat
     1621 atcgccgatc ccgctagcgc tgccgcgcca agcggcgaac gtgcgctgcg gcgatcccaa
     1681 tccaccagcc ggtcgacatc gcggtaaatg gactgcgcat gcgcaagcaa ctgatgggcg
     1741 aaaacgatcg gctgtgccgg ttgcaaatgc gtgaagccgg cgacgatggt ttccacatgc
     1801 gcctcggctt gttcaaccag cgcgtgctgc aattcgatca ccgacagtgc cagcttgcga
     1861 gccttgtcgc gtagatataa ccgcaggtcg ttcgctgcct gatcgttgcg tgaacggccc
     1921 gcgcgcaact tcccgccgat cgctttgagc cgctgcgtca gttcgcgctc gaggaaggtg
     1981 tggacgtctt cgtcggccag gataggggag aggtcgcccg caacaaactc ggtctctatt
     2041 tgctgcattg cgtcgagcag ttgttgaagc tcgtcggcgg tgaggatgcc ggctcgcttt
     2101 agttcgttcg catgggcgcg cgaaccggcg agatcgtagg gcgcaagacg gaagaagctc
     2161 gggtccgagc gggacaggtt ctccagcgcc agcgagggtc ctgatttgaa gcggccgccc
     2221 cagaggcgtt cggttgtgtc agtcgtgttc atgtgcgtgc ctgaggaagc gtttcggaat
     2281 gacgctaaga atgactctaa gcttacgcaa acaagttttt tgcttgtaga gagaattaaa
     2341 ttcgctttaa atcaaatttt tctcagcatc tcccgttcgc ccactttctg caaacttgta
     2401 tatgcgccat cggttgcccc cgctcaatcc cctgcgtgcg ttcga
//
LOCUS       DATGBK010000890         1957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_126218, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000890 DATGBK010000000
VERSION     DATGBK010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126218"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..1595
                     /gene="hutH"
                     /locus_tag="VKJ77_12435"
     CDS             120..1595
                     /gene="hutH"
                     /locus_tag="VKJ77_12435"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HMC46121.1"
                     /translation="MDKPLDWRGVARIANGAKLVLSPGARSRIDHARSLVEQIVERRI
                     RAYGVNTGVGALCDVVVSPSEQRALSRNILMSHSVGVGEPLRREETRAIIAAAVNNFA
                     HGHSGVRLELVELLVTLLDSGLTPEVPAFGSVGYLSHMAHIALVLIGEGFVRDDSGRM
                     SAAGAMQRLAREPLVLEAKEGLSVVNGTPCVTGLASLALARTERLLEWADTISAMSFE
                     NLRGQAAAFDADSLALRISPGLSVVGAHLRALLADSGIIAASFGRKTQDPLSLRTIPH
                     VHGAARDVFATTAEVVNRELASVTDNPVVAGTLASPRVFSQAHAVGASIGLAMDSLST
                     AVAEVAAMAERRIDRLVNPLVSGLPAFLADGGGTCSGFMIAQYTAASLVAHNRRLAMP
                     ASLDGGITSGLQEDHLCHATPAALKALEIIANAERIFAIELLAATQAYDLQPSDVSRA
                     PKTDAIYRSVRAVISRYRDDRPLAGDIAAAWAFVHEANPEF"
BASE COUNT          321 a          602 c          635 g          399 t
ORIGIN      
        1 caagcgaggt tgacgtgttg gctagttctt ttttaccggt gccatcgatt gatcccatcg
       61 tcatcggcgc ggacttgagt gacggttgcg gcaacgagcg ctcgccggct tctgtctgta
      121 tcgacaagcc gctcgactgg cgcggtgttg cccggatcgc gaatggcgcg aagctggttt
      181 tgtcaccagg ggcacgctcg cggattgatc atgcgcgctc gctggtcgag cagatcgtcg
      241 agcgccggat tcgcgcatat ggcgtgaaca ccggcgtggg cgcgctgtgc gacgtggtcg
      301 tgtcgccgtc ggaacagcgt gcgttgtcgc gcaacatcct gatgagtcac tcggtcggcg
      361 tgggcgagcc gctgcggcgt gaggaaacgc gcgcgatcat cgcggctgct gtgaacaact
      421 tcgcgcacgg gcattccggc gtgcgcctcg aactcgtgga gctgctcgtc acgttgctcg
      481 acagcgggtt gacgcccgaa gtcccggcgt tcggctcggt cggatatctg agccatatgg
      541 cgcatatcgc gctggtgctg attggcgaag gttttgtccg cgacgacagc ggccgtatga
      601 gcgccgccgg cgcgatgcag cgcctcgcgc gggaaccgct cgtgctcgag gcgaaggaag
      661 gcttgagcgt ggtcaacggc acgccttgcg tgacgggact cgcgtcgctg gcgctcgcgc
      721 gcaccgagcg gctcctggaa tgggccgaca ccatctcggc gatgtcgttc gagaacctgc
      781 gcggccaagc tgccgccttc gatgccgact cgcttgcgct gcgcatatcg ccgggattgt
      841 cggtggtggg cgcgcatctg cgggcgctgc ttgccgacag cggcatcatt gcggcgtcgt
      901 tcggacgcaa gacgcaggac ccgttgagct tgcggaccat tccccacgtg cacggcgcgg
      961 cgcgcgacgt gtttgcgacg acggcggaag tggtgaatcg cgaactggct tcggtcactg
     1021 ataaccccgt cgtcgccggc acgctcgcgt cgccccgggt gttttcgcag gcgcatgcgg
     1081 tgggcgcgtc gatcggcctg gcgatggata gcctgagcac cgccgtggcc gaggttgccg
     1141 caatggccga gcggcgtatc gaccggctgg ttaatccgct ggtcagcggc ttgcccgctt
     1201 ttctcgccga tggcggcggt acgtgttccg gtttcatgat cgcgcaatac acggcggctt
     1261 cactggttgc ccacaaccgc cgccttgcga tgcccgcgag cctggatggg ggcatcacct
     1321 ccggcttgca ggaggaccat ctgtgtcacg caacgccggc tgcgttgaag gcgctggaaa
     1381 tcatcgccaa tgccgagcgg atctttgcta tcgagttgct ggcggcgacc caggcgtatg
     1441 acctgcaacc gtccgacgtg tcgcgcgcac ctaaaaccga cgcaatttat cgaagcgtcc
     1501 gtgctgttat ctcccgatac cgggacgacc ggccattggc aggcgatatt gccgcagcct
     1561 gggcgtttgt ccacgaggct aaccccgagt tttaattcat tggggtcttg tatagacaga
     1621 tcgggcgaac tccgttgccg tcgattccgc cgtttttacg cgggatcggc gtccgcggct
     1681 caatttatac cgggacgtca ggcccgttca agtaaacccc tacccgaatc gatctgtaca
     1741 ccgcttgcgc tctgatttgt tttaattcag acttgtatat acaactcgtc gaccaaactc
     1801 catcgctggc tgaaacgcca cgaggaattg gtcgcaagat accgaatgtt caccatcccc
     1861 gtccgaggag tgctttgatg aaaaaccaca acccgcgtcc cctgcgcgca ccgcgcggca
     1921 ctgagcttac gtgcaagagc tggctcaccg aagcacc
//
LOCUS       DATGBK010000891         2901 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_288554, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000891 DATGBK010000000
VERSION     DATGBK010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2901
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288554"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..807
                     /gene="folE2"
                     /locus_tag="VKJ77_12440"
     CDS             <1..807
                     /gene="folE2"
                     /locus_tag="VKJ77_12440"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010089143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0035998 - 7,8-dihydroneopterin
                     3'-triphosphate biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase FolE2"
                     /protein_id="HMC46122.1"
                     /translation="NPAFAMPDVQSSLDIRQIPIQRVGVKAVRYPLTIRTSNGELQPG
                     VGVWNLDVHLPADQKGTHMSRFVALLDEHRAPLDQAAFRTMLASMLAKLEAHSGRIEV
                     SFPYFVMKTAPVSGVQSLMDYEVMLTGEVRGGETRISLKVLVPVTSLCPCSKQISQYG
                     AHNQRSHVTIAAEFEGDVAIEDLIRIAEEEASCELWGLLKRPDEKFVTERAYENPKFV
                     EDLVRDVATRLNADERIVSYVLEAENFESIHNHSAYAVIEHDKRASALAV"
     gene            complement(846..1874)
                     /gene="tsaD"
                     /locus_tag="VKJ77_12445"
     CDS             complement(846..1874)
                     /gene="tsaD"
                     /locus_tag="VKJ77_12445"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HMC46123.1"
                     /translation="MLVLGIESSCDETGLALYDTERGLLSHALHSQIAMHREYGGVVP
                     ELASRDHIRRALPLLEQVMAEAGTVPTDIDAIAFTQGPGLAGALLVGASIANSLAMAW
                     DLPTVGIHHLEGHLLSPLLVSEPPPFPFVALLVSGGHTQLMRVTDVGEYETLGETLDD
                     AAGEAFDKTAKLLGLGYPGGPEVSRLAEFGTSGAVKLPRPMLHSGDLDFSFSGLKTAV
                     LTHSRKLGANVCEQSKADLARGFVDAAVDVLTIKSIAALKQTGLNRLVVAGGVGANRQ
                     LREALSAAAKKRRFEVHYPDLSLCTDNGAMIALAGALRLARWPDQAVRDYAFTVKPRW
                     DLTSLAAA"
     gene            2056..>2901
                     /locus_tag="VKJ77_12450"
     CDS             2056..>2901
                     /locus_tag="VKJ77_12450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacetone oxidase family FAD-binding enzyme"
                     /protein_id="HMC46124.1"
                     /translation="METYDIAVIGAGAAGMMCAAVAAQNGRRVVLIDHAERLAEKIRI
                     SGGGRCNFTNINAGPANFLSANPHFCRSALARYTPQDFLALLKRHRVDWHEKHKGQLF
                     CDDSSESIIQLLKSECDAGGVTWRRPVTVDTIRQDGTRFFLDSNAGTISSAALVVATG
                     GLSIPKIGATDFAYRLAKQFGHKLIDTRPALVPLTFAPADWEPFAALSGLSVPVELSA
                     GAGRGRGEFSEDLLLTHRGLSGPGVLQISSYWNPSEPICIDLLPGVDATSELIAAKRE
                     TRKQVG"
BASE COUNT          564 a          893 c          893 g          551 t
ORIGIN      
        1 aatcccgcct ttgcgatgcc cgatgtccag agttcgctcg acatccggca gatcccaatc
       61 cagcgcgtgg gcgtaaaagc agttcgatat ccgctgacca tccggacttc gaacggcgaa
      121 ttgcagccgg gtgttggcgt ctggaatctc gacgttcatc ttcccgccga tcaaaaaggc
      181 acgcacatgt cgcgcttcgt cgctttactc gacgaacacc gcgcgccgct tgaccaggcc
      241 gcattccgca ccatgctcgc gtcgatgctg gcgaagcttg aggcgcattc ggggcgaatc
      301 gaggtttcgt ttccgtactt cgtcatgaag accgcgcccg tgtcaggcgt gcaaagcctg
      361 atggattacg aggttatgct gaccggcgag gtgcgtggcg gcgagacgcg gatctcgctg
      421 aaagtgctcg tgccggtgac tagcctgtgc ccgtgctcga agcagatttc gcagtacggc
      481 gcgcataacc agcgctcgca tgtgactatc gcggcggagt tcgagggtga tgtcgcgatc
      541 gaggacttga tccggattgc ggaagaagag gcctcgtgcg aattgtgggg tttgctgaag
      601 cggcccgacg agaagttcgt gaccgagcgt gcttacgaga acccgaaatt cgttgaagac
      661 ctggttcgcg atgtcgccac gcgactgaat gcggacgaac gaattgtgtc gtatgtgctg
      721 gaagccgaga acttcgagtc gatccacaat cacagcgcct acgccgtgat tgagcatgac
      781 aagcgggctt cagcgctggc tgtttgagcg agttgagcaa tagcccttca aactcatgca
      841 gctaattaag ccgccgccag cgatgtcagg tcccagcgcg gcttcaccgt gaacgcatag
      901 tcgcgcacgg cctgatcggg ccagcgcgcg agacgcaatg ctccggcgag ggcgatcatg
      961 gcgccgttat cggtacatag cgacaaatcc gggtagtgca cttcgaagcg acgctttttc
     1021 gcggcggcgg acagcgcctc gcgcaattgc cggttcgcgc ccacgccgcc cgccacgacc
     1081 agccggttca ggcccgtctg ctttaacgct gcgatcgact ttatggtcag cacgtcgacg
     1141 gccgcatcga caaaacctcg cgccagatcc gctttcgatt gctcgcagac gttcgcgccg
     1201 agcttgcggc tgtgagtcag tactgcggtc tttaacccgc tgaagctgaa atcgagatcg
     1261 ccggaatgga gcatcgggcg cggtagttta actgcgccgg atgtaccgaa ttcggcgagc
     1321 cgcgagactt caggaccgcc cggataaccc aggcccagca gttttgcggt tttatcgaag
     1381 gcttctcccg cggcgtcatc gagcgtctcg ccgagtgttt cgtattcgcc tacgtcggtc
     1441 acgcgcatca attgcgtatg gccgcccgac accaacaacg cgacgaacgg aaacggcggc
     1501 ggctcgctca ccagcagcgg cgacagcaga tgcccttcca gatgatgaat cccgacggtc
     1561 ggcaggtccc acgccatggc gagtgaattg gcaatgctcg cgcccaccag cagcgccccg
     1621 gcgaggccag ggccttgcgt gaacgcgata gcgtcgatat cagttggcac cgtgccggct
     1681 tccgccatga cttgctcgag gagaggcaat gcccggcgga tatggtcgcg ggaggccagt
     1741 tccggcacga caccgccgta ttcccgatgc atggcgattt gcgaatgcag cgcgtgcgaa
     1801 agcaggcctc gctcggtgtc gtagagcgca aggccggttt cgtcgcagga actttcgatg
     1861 cctagaacaa gcatggggcg gaggtgtttg gattaacaga taagtatagc agtgggcggg
     1921 tttgggctcg tccgtccaac ggcgttgctc ttgggcgatt gctcaagcgg ccgacgcgga
     1981 tcacggcccg cacaccgtgc cctgcagtcc aaccctgcct cgaacccgag cacaccaccc
     2041 gttacaatgc gcgccatgga aacctacgat atcgcagtga tcggcgcggg cgcggcaggc
     2101 atgatgtgcg ccgcggtagc cgcgcaaaac ggccgccggg tggtgctgat cgaccatgcc
     2161 gagcggcttg cggaaaaaat ccgcatctcg ggcggcggcc gttgcaactt cacgaatatc
     2221 aatgccggac cggccaactt cctctcggcg aatccgcatt tttgccgctc tgcgcttgct
     2281 cgctacacac cacaggattt tctcgcgctg ctcaagcgcc atcgcgtgga ttggcatgag
     2341 aagcacaaag gccagctttt ctgcgatgac tccagcgaat ccatcatcca gctcctgaaa
     2401 agcgaatgcg atgcgggcgg cgtgacctgg cgccggcctg tcaccgtcga tacgatccgc
     2461 caagacggca cccggttttt cctcgacagc aacgccggca cgatttcaag cgcggcactc
     2521 gtcgtcgcaa ccggcggcct gtcgatcccg aaaattggcg caacggattt tgcgtatcgg
     2581 ctggcgaagc aattcggcca caagctcatt gatacccgtc ccgccctggt gccactgacc
     2641 ttcgcgcccg ccgactggga gccgttcgcg gcgttatccg ggttgtcagt gccagtcgaa
     2701 ctcagcgcgg gcgcaggccg cggccgtggg gaattcagcg aggacctgct gctcacgcac
     2761 cgcgggttat caggcccggg cgtgttgcag atttcgagct actggaaccc ttcagagccg
     2821 atttgcatcg acttgttacc cggcgtcgat gccaccagcg aactgatcgc ggccaagcgg
     2881 gaaacgcgca aacaagtcgg c
//
LOCUS       DATGBK010000892         2961 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_10474, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000892 DATGBK010000000
VERSION     DATGBK010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2961
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10474"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1488
                     /locus_tag="VKJ77_12455"
     CDS             <1..1488
                     /locus_tag="VKJ77_12455"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC46125.1"
                     /translation="YRPYFQKALATGSGSFYGLGAASKKAGYFYAERIFADGKIVGIA
                     TVKITLDKIEALWRHAGDTAMISDGHGVIFLSTWESWKFKTLDALSDEARSSIIALHQ
                     YDAPGALQAIGLVRQTPEGEQAQTARFAPDADLGPHAPAFLRSRFLILSRPMADTSWM
                     ISSLSDIRSARVAAFNVALGVGLGMTLIAVFILYLLQRRRTVAQELAAKESLRRLNED
                     LERKVTRRTDALSKINKTLKVEIAERWRAEAVLKSTLQELVQAGKMAALGQMSASITH
                     ELNQPLAALRTLSANALAFMQRSELDQVHENLRVICSMTERMGKITSQLKRFARKSPT
                     YLERVLISSAVSNSLFLLDARIRSGNIQLRREEPDAKVFAIAEPNRLEQVLINLIGNA
                     IDSMAEAGNVRAHVLTIAVSCEAGHVAIEVRDTGAGMSEEVRGHLFEPFFTTKDQGEG
                     LGLGLTISASIIHEFGGTLLADVRPDGTVFTVRLKHATRRGNDVQ"
     gene            1478..2821
                     /locus_tag="VKJ77_12460"
     CDS             1478..2821
                     /locus_tag="VKJ77_12460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017878404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC46126.1"
                     /translation="MSNNMKVLFVEDDPAVRLGGVQAFRLSGLEVQAFERAEHALRYI
                     EFGFPGILVSDLRLPGMSGLSLMDHAIETDASLPVILMTGHGDIPMAVDAMRRGAYDF
                     VEKPYSSEQLVDVAQRALEKRRLTLDLWAVRQALGHRDNIESKILGRSAAIEHLRRMI
                     LDLADADANALILGETGTGKELVARSLHDYGHRKGGNFAAINCAGIPELLFESEVFGH
                     EAGSFTGAIKRRIGKIEHAQGGTLFLDEIETMQMSLQVKLLRLLQEKKFERVGSNDLL
                     KMDCRIVAGTKVDLLELAALKHFRDDLYYRLGVVVLEIPPLRDRREDIPMLFEHFVLH
                     AAAEYNKPVPVVSATHVRDLMSRQWPGNVRELRNVAERFTLGMPTRVDTTGSGGGAGK
                     ASLETQLNSFERQLIEEALRGCSGRAALACESLGVPKKTLYDKMRRLGISSDEFK"
BASE COUNT          608 a          882 c          909 g          562 t
ORIGIN      
        1 taccggcctt actttcagaa agcgctcgca accggcagtg gttcgttcta cggcctgggc
       61 gcagccagca aaaaagccgg ctacttttat gcggagcgaa tctttgccga cggcaagatt
      121 gtcggcatcg caaccgtcaa gatcaccctg gacaagatcg aagcgctctg gcggcacgca
      181 ggcgacacag ccatgatcag cgatggtcac ggcgtcatct tcctctccac ctgggagagc
      241 tggaagttca agacactgga cgctttatcc gacgaggcgc gctcgtcgat catcgccctt
      301 catcaatacg acgcgccagg ggccctgcaa gccatcggcc tggtcaggca gaccccggaa
      361 ggcgaacagg cgcagactgc ccggttcgca cccgacgcgg acctcggccc acacgccccc
      421 gctttcctca ggtcgagatt cttgatactg agccgaccga tggcggacac gagttggatg
      481 atcagctcct tgtccgacat cagatcggca agagtcgcgg ccttcaatgt cgcgctcggc
      541 gtcggactgg gtatgacctt gatcgccgtt ttcattctct acttgctgca gcggcggcgg
      601 accgtcgcgc aggagcttgc ggccaaggaa agcctgcggc gcctgaacga agaccttgag
      661 cgcaaggtca cgcgcaggac cgacgcactg agcaagatca acaagacgct gaaggtcgaa
      721 atcgcggagc gctggcgcgc ggaggcggtc ctcaagtcga cgctgcagga actggtgcag
      781 gcagggaaga tggcggcgct cgggcagatg tcggcgagca tcacccatga actcaatcaa
      841 cctcttgcag cgctgcggac cttgtcggcg aatgcgctgg cattcatgca gcgcagcgaa
      901 cttgaccagg tgcacgaaaa cctgcgcgtc atttgcagca tgaccgagcg gatgggcaag
      961 atcaccagtc agctcaagcg cttcgcgcgc aagtcgccga cctatctgga gcgcgtactg
     1021 atcagttctg ccgtgtcgaa ctcgctcttc ctgctcgatg cccgtatccg cagcggaaat
     1081 atccaactga gacgcgagga gccggacgcc aaggtattcg cgattgccga accgaaccgg
     1141 ctcgagcagg tgctgatcaa cctgatcggc aacgcgatcg actcgatggc cgaggccggc
     1201 aacgttcgcg cgcacgtgct gaccatcgcg gtctcctgcg aggcagggca cgtggcgatc
     1261 gaggttcgcg ataccggggc cgggatgtcc gaagaagttc gaggtcactt gttcgaaccg
     1321 tttttcacga cgaaggatca gggcgaaggg cttggcctgg gcttaacgat ttcggccagc
     1381 atcatccacg agttcggagg cacgctgctg gctgatgtcc gacccgatgg caccgtattt
     1441 acagtcagat tgaaacacgc cacgcggcga ggcaacgatg tccaataaca tgaaggtcct
     1501 cttcgtagaa gatgatccgg cggtgcggtt gggtggagtg caggcgtttc gtctgagcgg
     1561 gctggaagtc caggccttcg agcgcgccga gcatgccctg cgttatatcg aattcggttt
     1621 tcccggaatc ctggtcagcg acctgcggct tcccggcatg agcgggctct cgctgatgga
     1681 tcatgcaatc gaaaccgacg cgtccttgcc ggttatcctc atgacgggac acggcgatat
     1741 ccctatggca gtcgacgcga tgcgccgggg tgcttatgat ttcgtcgaga agccttattc
     1801 ctcggaacaa ctggtggacg tcgcgcaacg ggcgctcgag aagcgccgcc tgacgctcga
     1861 cctctgggcc gtacggcagg cgctgggtca tcgcgacaac atagaatcga agattctcgg
     1921 gcgctccgcg gcgatagaac atctgcgccg catgatcctc gatcttgccg acgccgacgc
     1981 aaacgcgctg attctcggcg agaccggaac cggcaaggaa ctggtcgcgc gttcgctgca
     2041 tgactacggg cacaggaaag gcgggaattt cgccgcgatc aactgcgcag gtatcccgga
     2101 actgctgttc gagagcgagg tattcggcca cgaagccggc tcgttcaccg gcgcgatcaa
     2161 acggcgcatc ggcaagattg aacacgccca gggtggaacc ttgtttctcg atgaaatcga
     2221 aaccatgcag atgtcgctgc aggtaaagct gctgcgcctg ctgcaggaga agaagttcga
     2281 gcgcgtcggc tccaacgatc tgctcaagat ggattgtcga attgttgcgg gaacgaaggt
     2341 ggatctgctg gaactggccg cgctcaagca cttccgcgat gacctgtatt accggctcgg
     2401 cgtcgtcgtg ctcgaaattc ctccgcttcg cgaccgtcgc gaggatatcc ccatgctgtt
     2461 cgagcacttt gtcctgcatg cagcggcaga atacaacaag ccggtgccag tcgtctccgc
     2521 gacgcacgtg cgggacctga tgtcccgtca gtggcccgga aacgttcgcg agctgcgcaa
     2581 tgtggccgaa cgattcaccc tcggcatgcc gacgcgcgtc gacacgacgg gcagtggtgg
     2641 cggcgccggc aaggcgtcgc tggaaacgca gctcaattcg ttcgagcggc agttgattga
     2701 agaggcattg cgcggatgct cgggccgcgc ggccctggcc tgcgagtcgt tgggagtacc
     2761 taaaaaaacg ctctacgaca agatgcgtcg acttggcatc agctcggacg agttcaagtg
     2821 aaagccgtcg cggattttct ccgctgcgtt tgtcaccgat ttcatccatc aaactggcca
     2881 cttgtctggc tttccgcaac gaacggctga aagcactgtc gtttcccccg ccaaatcaat
     2941 ggcttgatgc caactcatct t
//
LOCUS       DATGBK010000893         1841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_103061, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000893 DATGBK010000000
VERSION     DATGBK010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103061"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VKJ77_12465"
     CDS             <1..245
                     /locus_tag="VKJ77_12465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006400374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC46127.1"
                     /translation="LARDLGPFNIRVNTLVPGWVMTDKQRRLWLDEAGKRAIKEGQCI
                     DAELLPVHLARAALFLAADDSSMMTAQEVVIDGGWA"
     gene            242..1120
                     /locus_tag="VKJ77_12470"
     CDS             242..1120
                     /locus_tag="VKJ77_12470"
                     /EC_number="3.1.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HMC46128.1"
                     /translation="MKAQLLIDSQCSLGEGATWCAETGRFYWTDIEGERLWRYDPRDA
                     SRVSFDMPERLACFALCADADVLLLGLASRLAFFSLKTGAIETIMPVEADLPTRINDG
                     KCDRQGRFVFGTKHDVAKAEKIGGFYRLNPDLSLDRLPLGECAISNSIAFSPDGSRMY
                     FCDSPERVIRVCDYDSFANQRVFVELTDASGEPDGSAVDSDGGLWNAQWGGSRVVRYD
                     ADGRETARIDVPTAQPSCVAFGGAQLDTVYITSARVGLDAGVLQNDLHAGAVFIATPL
                     ARGIAEPVFRGHSHTH"
     gene            1289..>1841
                     /locus_tag="VKJ77_12475"
     CDS             1289..>1841
                     /locus_tag="VKJ77_12475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HMC46129.1"
                     /translation="MTVARPAGSSTPPPASSRPAAPTRRSKLAAATEPPIRPGPATSV
                     VAMGGAGVNGCITLANAQLRLDIAPALGGGITRFDWRSDGALVPIFRPCLAPSAATDP
                     NELACYPLLPYSNRIGGGRFQFLGRGVDVPCNRPGEPLPLHGDGWLGAWDVASESSTH
                     VRLTLDRRDGAPYSYTASQSFTLE"
BASE COUNT          297 a          549 c          635 g          360 t
ORIGIN      
        1 gcctcgcacg ggatctgggc ccgtttaata tccgggtgaa tacgctggtg ccgggttggg
       61 tgatgacgga taaacaacgt cggttatggc tcgacgaggc gggcaagcgc gcgatcaagg
      121 agggccagtg tattgatgcc gaattgctgc ccgtgcatct tgcgcgtgcc gcgttgttcc
      181 tggcggcgga cgacagcagc atgatgaccg cgcaggaagt ggtcattgac ggaggttggg
      241 catgaaagcg caactgctga tcgacagcca atgctcgctg ggcgagggcg cgacgtggtg
      301 cgccgaaacc gggcgttttt actggacgga cattgaaggc gagcgtttgt ggcgctacga
      361 tccccgcgat gccagccgcg tttcgttcga tatgccggaa cggcttgcat gcttcgcgtt
      421 atgcgccgat gctgacgtgc tgctgcttgg cttggcttcg cgactcgcgt tctttagtct
      481 gaagactggc gcgatcgaaa cgatcatgcc ggtggaagcc gatctgccga cgcgcatcaa
      541 cgacggcaaa tgcgatcgcc agggccgctt cgtgttcggg acgaaacacg acgtggcgaa
      601 ggcggagaag attggcgggt tttatcgatt gaaccctgat ttgtcgcttg atcgtttacc
      661 gctcggcgag tgcgcgattt cgaacagcat cgcgttcagt ccggacggct cgcgcatgta
      721 tttttgcgat tccccggagc gcgtgattcg cgtgtgtgat tacgattcgt ttgccaatca
      781 gcgcgtgttt gtcgaattga cggatgcaag cggcgagccg gatggttctg ccgtcgatag
      841 cgatggtggc ttgtggaacg cgcagtgggg cggcagccgc gtggtgcgtt atgacgccga
      901 tggccgcgaa acagcgcgca tcgacgtgcc gacggcgcag ccaagctgcg tcgcgttcgg
      961 tggcgcgcaa ctcgacacgg tgtacatcac gagtgcgcgg gtcggattgg atgcgggcgt
     1021 gttacagaac gatctgcacg cgggcgcggt ttttattgcg acgccgctgg caaggggtat
     1081 cgccgagccg gtgtttcgcg ggcatagcca cacgcattga gtgggtgggc gcggcgggct
     1141 ctacgtgccg cgccgcaaac ccgcggtatc acgttgcagg taaaacacga ggcggcgcgc
     1201 acgacgcgct gcccgcagct tcccgggcac gctggagcct caggccagga ccacgggatc
     1261 gatcgcctct cgttcggagt cagccactat gaccgttgcc cgtccagcag gaagctccac
     1321 gccaccaccg gcgtcgtccc ggcctgcagc gcccacccgc cgttccaagc ttgccgccgc
     1381 gacggagccg ccgattcgtc cggggcccgc cacgtcggtc gtcgccatgg gcggcgcggg
     1441 tgtcaacggt tgcatcacgc tcgccaatgc acaactacgc ctcgatatcg cgccggctct
     1501 cggcggcggc atcacgcgtt tcgactggcg tagcgacggc gcgctcgtgc cgatcttccg
     1561 gccgtgcctc gcgcccagcg cggccaccga tccaaacgag ctcgcgtgtt atccactgct
     1621 gccgtattcg aatcgcatcg gcggcgggcg gtttcagttt ctcgggcgcg gtgtggatgt
     1681 gccgtgcaac cggcccggcg agccgctacc gttgcatggc gacggctggc ttggcgcgtg
     1741 ggacgtggcg tcggagagtt cgacgcacgt tcggctcacg ctcgatcgcc gcgatggtgc
     1801 gccgtattcg tacacggcga gccagtcgtt cacgctcgaa g
//
LOCUS       DATGBK010000894         2302 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334541, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000894 DATGBK010000000
VERSION     DATGBK010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334541"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..783
                     /locus_tag="VKJ77_12480"
     CDS             <1..783
                     /locus_tag="VKJ77_12480"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC46130.1"
                     /translation="PALLLVHGLAHWTQAAWTRLAELLDPSLRIVAFDLPGFGASDKP
                     DVAYDAAVFLAAMQRVVDAKLPERFALCGHSLGGAIATRYAASHPQRITHLTLIAPAG
                     FAARRIYRLLGSRAGRFVLSLRPPKGIVRRIIHGAIVDAASITPQEKAQSIAFTRDPA
                     FRRAFSRIYRAALLEFARDGRAARLSAYTGPVLIAWGRHDAYIPIRALDTAHAIYPQA
                     AIEVFERSAHLPMIEEPRPLAAAMNAALTSLPSALHPRCPQK"
     gene            complement(737..1066)
                     /locus_tag="VKJ77_12485"
     CDS             complement(737..1066)
                     /locus_tag="VKJ77_12485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46131.1"
                     /translation="MAAIAVALRAPEESTLEHVRWEVALGATFDEAAFEEAFTGFRRL
                     YHIRPERVLCAPDVLSRYAHLYSRSADEAHARQLLFEGIALVSAIIKPGTIIFEGSVD
                     EERMGDW"
     gene            1056..1889
                     /locus_tag="VKJ77_12490"
     CDS             1056..1889
                     /locus_tag="VKJ77_12490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012417329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HMC46132.1"
                     /translation="MAATILDGRALAAELRAELTERAQTLRARGVSARLRIVIAGDDA
                     PSVAYAKALVALGEKTGVDVALVSIPGDASETQVLETVRALATDRNVHGIMVQQPLPR
                     HLAARTLTEAIPFEKDVDGARTGARAVFVPATAAAIMLLLDGSPSADPTGLRACVVGR
                     SPVVGLPVAHLLLARNATVTIAHSRTRDLAHHTRDADVLVVATGVPRIVRGSMIKPGA
                     TVIDAGTTYVDGKVTGDVAFDEALAVAGALTPVPGGVGPVTNVALLRNVINAAESAGT
                     T"
     gene            1923..>2302
                     /locus_tag="VKJ77_12495"
     CDS             1923..>2302
                     /locus_tag="VKJ77_12495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46133.1"
                     /translation="MIALFVLTAMLATPATAAPADETTPAEIGRVRANSAACLVSRDV
                     VIPAFAAAMHADTTFKVAAPQFGLYAAAKAETHTLPTNIGTKTRMVANDPWSATNQMY
                     LAKLDQALANITKDVLTISQALGD"
BASE COUNT          417 a          773 c          693 g          419 t
ORIGIN      
        1 ccggcacttt tgctggtgca cggcctagcc cattggacgc aagccgcctg gacgcgcttg
       61 gccgaattgc tcgatccatc gttacgcatc gtcgcgttcg atctgccggg attcggcgcg
      121 agcgataagc cggatgtcgc ctacgatgcc gccgtctttc tcgcggcgat gcagcgcgtc
      181 gtcgatgcga aacttccgga gcgcttcgcg ctttgcggac attcgctcgg cggcgcgatc
      241 gcgacccgct acgccgcttc gcatccgcag cgaattacgc atctcacgct tatcgcgccg
      301 gccggattcg cagcccgtcg catctaccgt ctgttgggca gccgcgccgg acgcttcgtc
      361 ctgagcttgc gaccgccgaa aggcatcgta cgccgcatca ttcacggcgc cattgtcgac
      421 gccgcctcga ttacgccgca agagaaagcg cagtccatcg cgtttacgcg cgaccccgct
      481 tttcgccgcg ccttttcgcg aatctatcgc gcggcactgc ttgagtttgc acgcgatggg
      541 cgcgcggctc gcctatccgc gtatacgggc ccggtgctca tcgcgtgggg ccggcacgat
      601 gcctacattc cgattcgcgc gctcgatacg gcgcacgcga tatacccgca ggctgcgatt
      661 gaagtcttcg agcggagcgc gcatctgccc atgattgaag aaccgcgccc acttgccgcc
      721 gcgatgaacg ccgcgcttac cagtctccca tccgctcttc atccacgctg ccctcaaaaa
      781 taatcgttcc cggtttgata attgcgctta caagcgcgat gccttcgaaa agcaattggc
      841 gcgcgtgcgc ttcatcggcc gaccgcgaat acaaatgcgc gtagcgcgac agaacatccg
      901 gcgcgcagag cacgcgttcg ggccgaatgt gatacaagcg ccgaaaaccg gtgaacgctt
      961 cctcaaacgc ggcttcgtcg aatgtcgcac cgagcgcgac ttcccagcgc acgtgttcca
     1021 gggttgactc ctcaggcgcc cgaagcgcaa cggcgatggc cgccacgatt ctggacggac
     1081 gcgcgctcgc agcggagttg cgggccgaat tgaccgaacg cgcgcaaacg ttgcgggcgc
     1141 gcggcgttag cgcgcgattg cggatcgtta tcgcaggtga cgacgcaccg tcggttgcgt
     1201 acgcgaaagc gctcgtcgca ctcggcgaaa aaaccggcgt cgatgtcgcg ctcgtgtcca
     1261 ttcccggcga cgcatccgaa acgcaggtgc tcgaaaccgt gcgcgcgctc gcgaccgatc
     1321 gcaacgtcca tggcatcatg gtgcagcagc cgttgccgcg acacctcgca gcacgtacgc
     1381 tgaccgaagc gattccattc gaaaaggatg tcgacggcgc gcgcacgggt gcacgtgccg
     1441 tctttgtccc ggcaacggct gcggcaatca tgctgctgct cgacggcagc cccagcgccg
     1501 atccaaccgg gctgcgcgcc tgcgtcgtcg gccgctcgcc cgtcgtcggt ttgccggtcg
     1561 cgcatttgct gctggcacgc aacgccaccg tcacgatcgc gcacagcaga acacgcgatc
     1621 tcgcgcatca tacgcgcgac gccgacgtac tcgtggtcgc gaccggtgtt cccaggatcg
     1681 tgcgcggctc gatgatcaaa cccggcgcga cggtcattga tgcaggcacc acatatgtcg
     1741 atggcaaggt caccggcgac gtggcctttg atgaagcgct cgccgtcgcg ggcgcgctaa
     1801 cgccggttcc gggcggtgtc ggcccggtta cgaacgtcgc cctgttgcga aatgttataa
     1861 acgcagcgga atccgccggc accacctagg gctataccgg cggctttgcc gaatacctga
     1921 gcatgatcgc gcttttcgtt cttacagcga tgctagcgac gccggccact gcagcgccgg
     1981 ccgacgagac gactcccgcg gaaatcgggc gcgtccgtgc gaattcggct gcctgccttg
     2041 tttcgcgcga cgtcgtcatc ccggcattcg ctgcggcgat gcacgcggac accacgttta
     2101 aggtggccgc accgcagttc ggtttgtacg ccgccgctaa ggccgaaacg cacacgttgc
     2161 ccaccaacat tggaacgaag accagaatgg tcgccaacga cccgtggagc gcgacaaatc
     2221 agatgtattt ggcaaagctc gatcaggcac tggcgaacat aacaaaggac gttttgacga
     2281 tttcccaggc acttggcgac aa
//
LOCUS       DATGBK010000895         1899 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_34499, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000895 DATGBK010000000
VERSION     DATGBK010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34499"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VKJ77_12500"
     CDS             complement(<1..254)
                     /locus_tag="VKJ77_12500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC46134.1"
                     /translation="MSSVWFITGSSRGIGYELAKAVLAAGHRLVATARRPEDLAALVA
                     QYCERVRAVALDVTDPASARAGVQQAVEAFGRLDVVVNNAG"
     gene            complement(388..1392)
                     /locus_tag="VKJ77_12505"
     CDS             complement(388..1392)
                     /locus_tag="VKJ77_12505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC46135.1"
                     /translation="MNHLQLGATGPRVSALGLGCMGMSGMYGPADRSESIATIHAALD
                     AGINLLDTGDFYGSGHNEALIGEALKGTKRDDAVISVKFGALRDPAGGWVGYDARPAA
                     VKNFLTYSMQRLGVDYIDIYRPARLDPNVPIEDTVGAIADMVKAGYVRHIGLSEVGAE
                     TIRRAAAVHPIADLQIEYSLISRGIEGEILSTCRELGIGVTAYGVLSRGLISGHWQAA
                     QNLAGNDFRAHSPRFQGENAERNLQLVEALRRIAEAKGVSVAQIAIAWVAAQGADIVP
                     LVGARRRDRLTEALGALDVVLTPDDLSAIEYAVPKGAAAGDRYAAAQMAHLDSEVRHG
                     "
     gene            1509..>1899
                     /locus_tag="VKJ77_12510"
     CDS             1509..>1899
                     /locus_tag="VKJ77_12510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46136.1"
                     /translation="MNDPDLSDLSAFVAITKVRSFRAAARLRGVSASALSEAIRRLEA
                     RLGVRLLNRTTRSVTVTEAGQRLLERLGPALGEIAGALDAINSFRDSPTGTLRLNVPT
                     IVAMHVLPPIVARFLAAHPGIKLEVVSN"
BASE COUNT          346 a          641 c          562 g          350 t
ORIGIN      
        1 cccgcattgt tgacgacgac atccaggcgg ccgaacgcct ctacggcctg ctgcacgccg
       61 gcccgcgccg aagccggatc ggtcacatcg agtgcgacag cgcgcacgcg ctcgcagtac
      121 tgcgcgacga gcgcggcaag atcctccgga cggcgcgcag tcgcaaccag gcgatgacct
      181 gcagccagaa cggccttcgc caattcatag ccgatgccgc gggaactgcc cgtaataaac
      241 cagactgaag acatgaggtg cttcctttat cggtgaacta aaagtgctgc gttcaccgga
      301 ttctaggagc gcgctctccg cggcactaat ccgatcgcgc caacttgcaa tcggatcgcg
      361 ccaacgcagc aagcttggcc ggagccgtta tccgtggcgg acttcgctgt cgagatgggc
      421 catttgcgca gccgcataac ggtccccggc tgcagcgccc ttcggcacgg cgtattcaat
      481 tgcgctgaga tcatccggcg tcagcacgac atccagcgcc cccagcgctt ccgtcaaccg
      541 gtcccgtcgc cgtgcgccaa ccagcggcac gatatccgcg ccctgcgccg cgacccacgc
      601 aatcgcgatc tgcgccaccg acacgccctt ggcttccgca attcgccgca acgcttcgac
      661 caactgcagg ttgcgttcag cgttttcgcc ttggaaacgc ggactgtgcg cgcggaaatc
      721 gttgccggcc agattttgcg ccgcctgcca atgaccgctg atcagccctc gcgacaacac
      781 gccgtaagcg gtcacgccaa taccgagttc gcggcacgtc gagagaattt cgccttcgat
      841 accccgtgaa atcagcgagt attcgatctg caaatccgcg attgggtgta ctgccgccgc
      901 gcgtcggatc gtttcggcgc cgacttcgga cagcccgata tgacgcacgt aacctgcctt
      961 caccatgtcg gcgatcgcgc ccacggtgtc ctcgatcggc acattcggat cgagccgcgc
     1021 cggccgatag atatcgatgt aatccactcc caggcgctgc atcgaatacg tcaggaagtt
     1081 cttcaccgcg gccggcctcg cgtcataacc cacccagccg ccggccggat cgcgcaacgc
     1141 gccgaatttc acgctgatga cagcgtcgtc gcgtttcgtg cccttcaacg cttcgccaat
     1201 caacgcttcg ttgtggccgc tgccgtagaa atcgccggta tcgagcaggt tgatgccggc
     1261 gtcgagcgcc gcgtgaatcg tggcgatgct ttcgctccgg tcggccggtc cgtacatgcc
     1321 ggacatgccc atgcagccaa gtccgagtgc cgatacgcgc ggtccggtcg cgccaagttg
     1381 cagatggttc atgtcaagtc tccttaggtc ctgcgtcgcg tgattgcgag cgttggagag
     1441 agtatgcgag gcgttttgtc gtgcgacaat ccggccttca cagaacgggc tgtacgaaaa
     1501 aacgcacaat gaacgatccc gatctctccg atctcagcgc cttcgtggcg atcaccaagg
     1561 tgcgcagttt cagggcggcg gcgcgtttgc gcggtgtgtc ggcgtcggcg ctgagcgagg
     1621 caattcgccg gcttgaagca cggctcggcg tgcgtctgct aaatcgcacc acccgcagcg
     1681 tcacagtcac ggaagccggg caacgcctgc tggaacgcct ggggccggcg ctcggcgaga
     1741 ttgccggcgc gctcgatgca atcaacagtt tccgcgacag cccgaccggc actttgcgcc
     1801 tgaacgtgcc taccatcgtg gccatgcacg tgctgccgcc catcgtcgcg cgttttctcg
     1861 ccgcgcatcc ggggatcaag ctggaggtgg tatcgaacg
//
LOCUS       DATGBK010000896         2934 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_149139, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000896 DATGBK010000000
VERSION     DATGBK010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149139"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VKJ77_12515"
     CDS             <1..336
                     /locus_tag="VKJ77_12515"
                     /EC_number="4.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584876.1"
                     /note="catalyzes the formation of L-proline from
                     L-ornithine; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine cyclodeaminase"
                     /protein_id="HMC46137.1"
                     /translation="VMVEFEPQTRIEGDIQQLPADSPVIEFWRVLAGEVQGRESDAQV
                     TVFDSVGFALEDFSALRYLNDLVRTKGIGTPIDLIAQPSNCKDLYSLVASCSTGESDE
                     RVRSLFQVA"
     gene            479..1396
                     /locus_tag="VKJ77_12520"
     CDS             479..1396
                     /locus_tag="VKJ77_12520"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46138.1"
                     /translation="MTLIQLRVFCAVVEQGSFRAAARALDIGQSTLTQAIQSLEAELG
                     VTLLNRSHQGISVTSLGETFLVRANAIIRDCERAMQDMQQSSGEPEGQIALGVTSEPL
                     AESLLPVLKRFIARFPRVRVHVTSGYAKMLIEKIRDGRLDFALCPLAPPVSDVDLDIE
                     RLYRSAPGVIARKGHPQAHATSVRDLKDCEWVSIRPAGIVGGAENRLTSLFRAEGLGE
                     PRIVVTAESLLETLHIVCESDYLTIEPRVLVELKLFSNSIINIPIREAFDPRDVCLIS
                     RRSAPLTMVAQELASMLVSYSRMLHGTGS"
     gene            complement(1434..>2934)
                     /locus_tag="VKJ77_12525"
     CDS             complement(1434..>2934)
                     /locus_tag="VKJ77_12525"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006391227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HMC46139.1"
                     /translation="ASAEDLIAAQQADGLTRADPSAVGVDADAIIAFLNDVEADGLDL
                     HAFMLHRNGKVVAEGWRWPYRPDRPRNLHSVVKSFTACAIGLALEEGLLKLDDKVVSF
                     FPEVIVEPDQGWLAQMTSEDLLTMRVGHAGETSGAEWRSLNTSWIAEFFKIPIAHEPG
                     TAFMYTSAASYMLSAILSRAAGVTLHDYLKPRIFEPMGIEGESWDIGPDGINPGGNGL
                     IARTADLLKLGILHAQNGVWEGRRLLPESWVAAATRAHGEPAKYGYHWWTRPDCTYSA
                     IGKFVQMTTVFPLHGATLAVTGAIKGSAKLFPHIDRHFPAAFRDQNRDHIEEGAQADA
                     RLKARLADWQSPDAPAPWKEPFERAGAVTDGARAPGNTDRFLMQPNAQGVSELQLEFA
                     GETCVFRLTDAQGEHVIVAGLGRWLEGRTDMPGSDLHHGYAFDNSPVVARACWLDNTR
                     LQMTWIFPETAFRDTVICEFSGKTITFKREVNINGGALRHEDLTGSLAS"
BASE COUNT          555 a          896 c          890 g          593 t
ORIGIN      
        1 gtgatggtgg agttcgaacc acagacgcgc atcgagggcg acatccagca gctgcccgcc
       61 gactcgcccg tgatcgagtt ctggcgcgtg ctggccgggg aagtgcaagg ccgtgaatca
      121 gacgcacagg tgaccgtatt cgattcagtc gggtttgcgc tggaagactt ttcggcgctg
      181 cgttacctga acgatctcgt gcgcaccaag ggaattggca cgccgatcga cctgatcgcg
      241 cagccgtcga actgcaagga tctctactcg ctcgttgcat cgtgcagcac cggtgaaagc
      301 gacgaacgcg tacgaagcct ctttcaggtt gcctgaaaca tcgaggtagc ggggcagcgg
      361 aactcagcgg tacacgctgg ctttctggaa ggctatgctt gcacaagccg aacgcatcgc
      421 tcccgccggc atggcatagg accgggcgag cgttgcactt attccagagg gttttttcat
      481 gacgttgatc cagctccggg tgttttgcgc agtcgtggag caaggcagct tccgtgccgc
      541 cgcaagagcg ctcgacattg ggcaaagcac actgacgcaa gccatccaga gccttgaggc
      601 cgaactcggc gtgacgctgc tgaaccgatc tcatcagggt atcagcgtga caagcctggg
      661 cgagaccttc ctcgttcgcg cgaacgcgat cattcgtgat tgcgaacgcg cgatgcagga
      721 catgcagcag tcgtcgggag aacccgaagg acagattgcg ctcggcgtta cgtccgagcc
      781 gttagcggaa tccctgctgc cggtactcaa gcgttttatt gcgcgctttc cgcgcgtgcg
      841 cgtgcatgtg accagcggct acgcgaagat gctgatagag aagatccgcg acggccggct
      901 cgacttcgcg ctgtgtccgc tcgcgccgcc agtcagcgac gtcgatctcg acatagaacg
      961 cctttaccgg tcggcgccgg gcgtgatcgc gcgcaagggt cacccccagg cgcatgccac
     1021 ctccgttcgc gatctgaagg attgcgagtg ggtcagcatc cggcctgcgg gaattgtcgg
     1081 tggagcggag aaccgcctga ccagcctctt tcgagcagaa ggactgggag agcccaggat
     1141 cgttgtcacg gcggaatcgc tgctggagac gctgcacatt gtttgcgaat ccgattacct
     1201 gaccatcgag ccgcgcgtgc tggtcgagtt gaagctgttc tcgaattcga ttatcaacat
     1261 cccgattcgt gaagcgttcg acccgcggga tgtatgtctt atcagccggc gttctgcacc
     1321 gttgaccatg gtcgcgcagg agctcgcaag catgctggtg tcctattcac gcatgctgca
     1381 tggcaccggt tcgtgaaggg cgccatgcgt taattctccc cgccggtctc tttctagctc
     1441 gcgagtgagc cggtcaaatc ctcgtgacgc aacgcaccgc cgttgatgtt cacttcacgc
     1501 ttgaacgtta tcgtcttgcc cgaaaattcg cagatcacgg tgtcgcggaa agcggtctcg
     1561 gggaagatcc aggtcatctg cagccgcgtg ttatcaagcc agcatgcacg ggcgacgacc
     1621 ggactgttat cgaacgcgta gccgtggtga aggtcgctgc cgggcatgtc agtgcggccc
     1681 tccagccacc ggcctaaccc ggcgacaatg acatgttcgc cttgcgcatc ggtcagacga
     1741 aacacgcacg tctcgccggc aaattcgagt tgcaattcgc tcacgccttg ggcgttgggt
     1801 tgcatcagga agcggtcggt gtttccgggt gcgcgtgctc catccgtgac cgcaccggcc
     1861 cgttcgaaag gttctttcca cggtgccggc gcatccggac tttgccaatc ggcaagcctc
     1921 gctttgagcc gcgcatcagc ttgggcgccc tcttcgatgt gatcgcgatt ttgatcacga
     1981 aaggccgccg gaaaatgccg gtcgatatgc ggaaacagct ttgcgctgcc ctttatcgca
     2041 ccggtaacgg caagcgttgc gccatgcaac gggaacacag tcgtcatctg gacgaacttg
     2101 ccaattgcgc tatacgtgca gtcaggccgc gtccaccagt gatagccgta tttcgcaggc
     2161 tcaccgtgcg ccctcgtagc ggcagcgacc cagctttcgg gaagtaagcg gcgaccctcc
     2221 cacacgccgt tttgcgcatg caggatgcct agcttcaaca gatccgcggt tcgtgcgatg
     2281 aggccattgc ccccggggtt gatgccgtct ggaccgatat cccaggattc gccttcaatg
     2341 cccatcggct cgaaaattcg cggcttaaga tagtcgtgca gcgttacgcc cgcagcgcga
     2401 cttagtatgg ccgacaacat gtagctggca gcgctcgtgt acatgaatgc cgttcccggc
     2461 tcgtgcgcga tcgggatctt gaagaactcc gctatccagc tcgtgttcag cgatcgccac
     2521 tcagccccgg atgtttcgcc tgcatgaccc acgcgcatcg tcaggaggtc ttcgctcgtc
     2581 atctgcgcca gccagccttg atccggttcg acaatgacct cggggaagaa cgagaccacc
     2641 ttgtcgtcga gcttgagaag accctcctcg agcgccagcc cgatcgcgca tgcggtgaaa
     2701 ctcttgacga ccgaatgcag gtttcgcggc cggtcgggcc gatacggcca gcgccagccc
     2761 tcggcaacca ccttcccgtt gcggtgaagc atgaaggcgt gcaggtcgag gccgtccgct
     2821 tcgacgtcat tcaggaatgc aatgatggca tcggcatcca cgcccaccgc ggacggatcg
     2881 gcgcgcgtca gaccgtcggc ttgctgagcc gcgatgaggt cctcggccga tgca
//
LOCUS       DATGBK010000897         4514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_196207, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000897 DATGBK010000000
VERSION     DATGBK010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196207"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..889
                     /locus_tag="VKJ77_12530"
     CDS             116..889
                     /locus_tag="VKJ77_12530"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HMC46140.1"
                     /translation="MSQASLFDAEASKAQPFTSLESQFDALPADWRKHLKTFIDSPHY
                     AALCAFVDAERAAGKTVYPADVFRALRLTRPGDVKVVILGQDPYHGEDRGAPQAHGLA
                     FSVPAPVRPPPSLKNIFKEINASLGFTAPAHGCLDAWAQQGVLLLNTSLTVERDKAGS
                     HAKRGWEHCTDTLIHELALRHEHLVFMLWGAHAQAKRGLIASAVASGKAHCVLEAPHP
                     SPLSAHRGFLGCGHFVSANTYLEEHGRPAIDWRLPDATA"
     gene            complement(955..1551)
                     /locus_tag="VKJ77_12535"
     CDS             complement(955..1551)
                     /locus_tag="VKJ77_12535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HMC46141.1"
                     /translation="MTTILQINSAARSQGAQSTLLADEVSAKLQQAHPGAKLVVRNLL
                     SDNLPHLDDATLGAFFTPADQRTTEQNAINAKSEALIAELQAADVVVIAAPMYNFGIS
                     SQLKAYFDWIARAGITFKYGATGPEGLVTGKKVIVVSARGGKYSGTPNDSQTPYLKSF
                     LGFLGMTDVSFIFAEGLAMGPDAAGAALATARDSIAAL"
     gene            complement(1701..3500)
                     /locus_tag="VKJ77_12540"
     CDS             complement(1701..3500)
                     /locus_tag="VKJ77_12540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HMC46142.1"
                     /translation="MNAIRYTIVPKNPAAHLFEVTLTVAQPDPSGQRFVLPVWIPGSY
                     MIREFARNIVTLQAFNAAGRKLAIDKTDKHAWQTAPHDGPITLRYEVYGWDLSVRAAH
                     LDDTIGFFNGTSVFLAVEGQADAPCIVDIQKPSGTQYANWRVATAVPEARGTKRYGFG
                     AYEAPNYDALIDHPVTLGEFALGSFDAHGAKHDIVISGRVTGLDMHRLETDLKRVCEA
                     QIALFEPRTKKAPVDRYVFMTVAVADGYGGLEHRASTALICNRSDLPVAGRPDVTDGY
                     RTYLGLCSHEYFHTWNVKRIKPTAFAPYDLSQENYTSLLWLFEGFTSYYDDLMLVRSG
                     LISASEYFSLLGKTLGGVLRGSGRLKQTVAESSFDAWVKYYRQDENAANAIVSYYQKG
                     SLVALAFDLSIRAQTEGKKSLDDVMRLLWQRYGRDFYYGKARGIEESEVEALFAEATG
                     ADLKKLFREGVHGTRDLLLDTLFEPFGITFAPEVATNGTAAKPSLGARVRNGTDCVLA
                     AVHENSAAQKAGLSAGDVLVAIDGLRVTGSNLDTLLSRYLPGAKVEVHAFRRDELRIA
                     QVKLDPPEVSRYVLSTADGRGPSKQWREHWLKG"
     gene            complement(3667..4398)
                     /locus_tag="VKJ77_12545"
     CDS             complement(3667..4398)
                     /locus_tag="VKJ77_12545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HMC46143.1"
                     /translation="MKITLRRALVAAATLAAVFGIGIAAQADQTTDKIKATLQSRIGD
                     ADIKSVEKSPVPGLYEVNLGAQIVYTDATGNYLLMGDLVDTRTRTNITEARLAETNKI
                     DFAKLPFENAVKVVKGTGARKIAVFSDPNCPYCKQLETTLKSVDNVTVYTFLYPVLSP
                     DSSVKSKSIWCSKDRSGAWEGWMLDHTAPTASASCDTTAIDKNLKLGQSMNVTGTPTV
                     FLADGRRLPGAVPADRLEKELSAVH"
BASE COUNT          887 a         1364 c         1333 g          930 t
ORIGIN      
        1 tggccgcgca aatgcgggga gcgttcctgt atctccagcc tgaggacgcc agcaaggcac
       61 gccggggcta cgatttgtgc gagcccaaag tggctggctc taacggcggc gtgaaatgag
      121 tcaggcgtca ctgtttgatg ctgaggcatc gaaagcccag ccgtttacat cgctggaaag
      181 tcagttcgac gcgttgccgg ccgactggcg caaacatctg aagacattta tcgatagccc
      241 gcattacgcc gcattgtgcg cgttcgtcga tgctgaacgc gccgccggca agaccgtgta
      301 tcccgccgat gtcttccgcg ccttgcgcct gactcgtccc ggcgacgtga aggtcgtgat
      361 cctcggacag gatccttacc acggtgaaga tcgaggtgcg ccgcaggctc acggcctggc
      421 gttttcggtg cccgcgccgg ttcggccgcc gccatcgctg aaaaatatct tcaaggaaat
      481 caacgccagc cttggtttta ctgcgcccgc tcacggttgt ctcgacgctt gggcacaaca
      541 aggcgtgctg ctgttgaaca catcgctgac ggttgaacgc gataaagccg gcagtcacgc
      601 caagcgcggc tgggaacatt gcaccgacac gctgattcac gaactcgccc ttcggcacga
      661 acatctcgtg ttcatgcttt ggggcgcaca tgctcaggca aaacgagggc tgattgcgtc
      721 ggcggtggcg tccgggaaag cgcactgcgt tctggaggcg ccccaccctt ctccgctgtc
      781 ggcccatcgc ggctttctgg gctgcgggca ttttgtgtcg gcgaatacgt atctcgagga
      841 acacgggcga cccgccatcg actggcgtct gcctgacgcc accgcataaa aaaacccgcc
      901 gatgtctcgc gacacggcgg gtttttcaag aaagcgtcct gctacgtcac aagcttacag
      961 cgcggcgatc gagtcgcgtg cggtagccaa ggcagcgccg gcagcgtccg ggcccattgc
     1021 caagccttcg gcaaagatga agctgacgtc ggtcatgccg aggaagccga ggaacgactt
     1081 cagatacggc gtttgcgaat cgttcggcgt accgctgtac ttgccgccgc gtgccgacac
     1141 aacaatcacc ttcttgcccg tcaccaggcc ttcagggccg gtcgcgccgt acttgaacgt
     1201 gatgcctgcg cgtgcgatcc agtcgaagta cgccttcagt tgcgacgaaa tgccgaagtt
     1261 gtacatcggt gctgcgatca cgaccacgtc agctgcttgc aattcggcga taagcgcttc
     1321 gctcttcgcg ttgattgcgt tttgttcagt cgtgcgctgg tcggcgggcg tgaagaacgc
     1381 gccgagggtg gcgtcgtcaa ggtgcgggag gttgtcggaa agaagattgc gaaccactag
     1441 cttcgcaccc gggtgcgctt gctgcagctt cgccgacact tcgtcagcca gcaacgtgga
     1501 ttgggcgcct tgcgagcggg ctgcggaatt gatttgaaga atggtcgtca tgatgattcc
     1561 tgtgtctagt ggagttcgag cacggatcgc gctctgacaa gacgcattct tcttttttac
     1621 gacgccggga acaagctgtg cactcgtgac ggattgttgc agcagtagaa caatccgcct
     1681 ttagccctgc ttttagcccc tcaacctttc agccagtgtt cgcgccattg ctttgacggg
     1741 ccacgcccat cggcggtgga aagcacataa cgcgacactt ccggcggatc gagcttgacc
     1801 tgcgcgatgc gcaactcgtc gcgccgaaat gcgtgcactt ccaccttcgc gcccggcaaa
     1861 taacgcgaca gcagcgtgtc gagattcgat cccgttacgc gcaagccgtc aattgcgacc
     1921 agcacgtcac ccgccgataa ccccgccttc tgcgccgcgc tgttctcgtg gacagccgcg
     1981 agtacgcaat ccgtgccatt gcgaacgcgc gcgccgagcg atggtttcgc cgccgtgccg
     2041 ttggtcgcga cttcgggcgc gaacgtaatg ccgaagggct cgaacaaagt atcgagcagc
     2101 agatcgcgcg tgccgtgaac cccctcgcgg aagagctttt tcagatcggc gccggttgcc
     2161 tcggcaaaca gcgcttccac ttcgctttct tcgatacccc gcgctttacc gtaataaaaa
     2221 tcccggccgt agcgttgcca caggagccgc atgacgtcgt cgagtgactt cttgccttcg
     2281 gtttgcgcgc ggatcgacag gtcgaaagcg agcgcgacaa gcgaaccctt ctggtaatag
     2341 ctgacaatcg cgttcgccgc gttttcgtcc tgccgataat atttgaccca cgcgtcgaac
     2401 gagctttcgg ccacggtctg cttgaggcga cccgacccgc gcaacacgcc gccgagcgtc
     2461 tttcccagaa gcgaaaaata ctcgctcgcg ctgatcaggc cgctgcgcac gagcatgagg
     2521 tcgtcgtagt acgacgtaaa accttcgaac aaccacagca acgacgtgta attttcctgc
     2581 gacaaatcgt acggcgcgaa cgcagtgggt ttaatgcgct tcacgttcca cgtgtggaaa
     2641 tattcgtggc tgcaaagacc aagatacgtg cgataaccgt ccgtcacatc cgggcgtcct
     2701 gcaacgggca aatccgagcg attgcagatc agcgccgtcg atgcacgatg ttcgaggccg
     2761 ccgtaaccat cggcgacggc gaccgtcatg aacacatatc gatcaaccgg cgccttcttc
     2821 gtacgcggct cgaacaacgc aatttgcgct tcgcaaacac gcttgaggtc ggtttccagg
     2881 cggtgcatat cgagaccggt cacgcggcct gaaatcacga tgtcgtgctt cgcgccgtgg
     2941 gcatcgaaag aaccgagcgc gaactcgccc agcgtcacgg gatgatcgat cagcgcatcg
     3001 taattcggcg cttcatacgc gccgaagccg tagcgcttcg tgccgcgcgc ctcgggcact
     3061 gccgtcgcca cgcgccagtt cgcgtattgc gtaccagaag gcttttgaat atcgacgata
     3121 cacggcgcat ccgcctgccc ttccaccgcg aggaacacgc tcgtaccgtt gaaaaagccg
     3181 atggtgtcgt cgagatgcgc cgcgcgcacc gagaggtccc aaccgtagac ctcgtaacgc
     3241 agcgtgatcg ggccatcgtg cggtgctgtt tgccacgcgt gcttgtcggt tttatcgatg
     3301 gcgagcttac ggccagccgc gttgaacgct tgcagcgtga caatattgcg ggcgaattcg
     3361 cggatcatat agctgcccgg aatccacaca ggcagcacaa aacgctgacc cgacggatcg
     3421 ggttgcgcaa cggtcaacgt cacttcgaac aaatgcgcag cgggattttt cggaacgatg
     3481 gtgtaacgga tggcattcat gcgtcgaggt cctttgttct tgtcgccggg tttggctgtc
     3541 cggcccagcg ttttgtgcct gcgcggtcca tgacggaatc cgtcgcgcaa cttcatgaaa
     3601 gcgaaagagg cgcttcgcgc gcctccttcg tcgttggtcg acttatcgtc aacacagaca
     3661 gctcaatcag tgaaccgccg acagttcctt ctcgagccga tctgccggca ctgcgccggg
     3721 cagacggcgt ccgtcggcga ggaaaacggt cggcgtgccg gtgacattca tggactggcc
     3781 gagcttcagg ttcttgtcga tggcggtcgt atcgcagcta gcggacgcgg tgggtgccgt
     3841 gtggtcgagc atccagcctt cccacgcgcc agaacgatcc ttcgaacacc agatcgactt
     3901 cgacttgacc gacgaatccg gcgacaagac cgggtacagg aaggtgtaga ctgtgacgtt
     3961 atcgacggac ttgagcgtgg tttccaactg cttgcagtac gggcaattcg gatcggagaa
     4021 caccgcgatc ttgcgcgcgc ccgtgccctt caccaccttg accgcgttct cgaacggcag
     4081 cttcgcgaaa tcgatcttgt tcgtttccgc cagacgcgct tcggtgatgt tcgtgcgcgt
     4141 gcgggtatcg acgagatcgc ccatcagcag atagttgccg gtcgcgtccg tgtagacgat
     4201 ctgcgcgccg aggttgactt cgtagagccc cggaaccggc gatttctcca cgcttttgat
     4261 gtcggcgtca ccaatgcgcg attggagcgt ggccttgatc ttgtcagtgg tctgatcagc
     4321 ttgtgccgcg atgccgatac caaacaccgc agccagcgtg gcagcagcga ccaaggcgcg
     4381 gcgaagagtg attttcattc gagtttccgt caatctgaag taggtgggat gttcttatcc
     4441 aggacttaac caagtcttaa ccaagtctta accaagcgcc gcggacacaa gccagcgctt
     4501 gataagcggt tgtg
//
LOCUS       DATGBK010000898         1548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_311630, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000898 DATGBK010000000
VERSION     DATGBK010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311630"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /locus_tag="VKJ77_12550"
     CDS             complement(<1..752)
                     /locus_tag="VKJ77_12550"
                     /inference="COORDINATES: protein motif:HMM:NF017946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HMC46144.1"
                     /translation="MIATRPYRFRLEPYIEFAKKAIARESTYRFEVFTSIGSFVVRVY
                     LLRMVWTALYARNTAPDGLPLHAIITYSTVALLMGLVLDIDQTRLLHDHLHDGQIATD
                     FMKPISVPLYFFADGTGEVLFHAALIAPALLLSLFLVHIDVPSPYVLVMFLISFILGY
                     FVGFFINFILNCVAFWTLEISAAQLILTWVTDLFGGQLFPLTFFPAALQQVVFLLPFA
                     AMFSTPLLIYVGQIRPDRYAEVIGIQIGWIVVL"
     gene            complement(749..>1548)
                     /locus_tag="VKJ77_12555"
     CDS             complement(749..>1548)
                     /locus_tag="VKJ77_12555"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC46145.1"
                     /translation="TGILVPTSGTIEVAGIVPHQHRQANACNIGVVFGQRSQLYWDLP
                     LRESFELLRAIYDVPRDRYLQNMRVFAELLDLERFLDTPVRQLSLGERMRGDFAAAML
                     HDPKIVYLDEPTIGLDVIAKEAIRDFVSRVNRERGTTVILTTHDLADVERLCERIVLI
                     DKGTIIYDGPIERLRTEYGTHRTLIVNLAGSYPDFAVAGAELESREQNTVRLRFDRRT
                     ITAEALIRRVTEAHAITDVQIVEPDIETIIRRIYVEGYNVVPAVSPA"
BASE COUNT          380 a          429 c          461 g          278 t
ORIGIN      
        1 aggaccacga tccatccgat ctggatacca atgacttcgg catagcgatc gggccgtatc
       61 tgcccgacgt agatcaacag cggcgtggaa aacatcgccg cgaacggcag caagaacaca
      121 acctgttgaa gcgccgcggg aaaaaaggtc agcggaaaga gctggccacc gaagagatcg
      181 gtaacccacg tcaagatcag ctgggccgcg ctgatttcca acgtccagaa ggcaacgcaa
      241 ttcaggataa agttgataaa gaaaccgacg aaatagccaa gaatgaagct aattagaaac
      301 atcacgagca cgtacggtga cggaacgtcg atgtgtacga gaaagagcga caacagtaag
      361 gccggggcga taagggcggc atgaaataac acctcgcccg ttccatcggc aaaaaagtaa
      421 agcggaacgc tgatcggctt cataaagtcc gtagcgatct gaccgtcgtg cagatgatcg
      481 tgcagtaggc gcgtctggtc gatatccagt acgagaccca tgagcagcgc aacggttgaa
      541 tacgtgatga tcgcgtgcaa cggcaaacca tcgggcgccg tgttgcgtgc gtagagtgcg
      601 gtccacacca tgcgcaacag gtagacgcgc acgacgaacg agccgatgct cgtaaatact
      661 tcaaaccggt aggtcgactc gcgggcaatc gctttttttg cgaactcgat atacggttcg
      721 agccgaaagc ggtacgggcg ggtcgcgatc acgcggggct cacggccggc acgacgttgt
      781 acccctcgac atagatgcgg cgaatgatcg tctcgatatc gggctcgacg atttggacat
      841 cggtgatcgc atgtgcctcg gtcacgcgcc gaatgagcgc ttctgccgtg atcgtccggc
      901 ggtcgaaacg caaccgcacc gtattctgct cgcggctctc aagctcggcg ccggctaccg
      961 caaagtccgg ataggaaccc gctaaattca cgatgagcgt gcggtgggta ccgtattcag
     1021 tgcgaaggcg ttcgatcggt ccatcgtaga taatcgtacc cttatcgatc agcacgatgc
     1081 gctcgcataa gcgctcgaca tccgcgaggt catgggtcgt aaggatgacg gtcgttccgc
     1141 gttcgcggtt tacgcgcgag acaaagtcgc ggatcgcttc tttcgcgata acgtccaagc
     1201 cgatggtggg ctcgtccagg tacacgattt taggatcgtg gagcatcgcc gcggcaaaat
     1261 caccgcgcat gcgctcgccc agcgacaact gccgcaccgg cgtatcgaga aagcgctcga
     1321 gatccagcaa ctcggcgaac acgcgcatgt tttgcagata tcggtcgcgc ggcacgtcgt
     1381 agatagcgcg caagagctcg aacgactcgc gcagcggcaa gtcccaatag agttggctgc
     1441 gctgtccgaa gacaacgccg atattacaag cgttcgcttg ccgatgttgg tgtggcacga
     1501 tgccggccac ttcaatcgtc ccggacgtcg ggacgagaat cccggtga
//
LOCUS       DATGBK010000899         1736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_34570, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000899 DATGBK010000000
VERSION     DATGBK010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34570"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1736)
                     /locus_tag="VKJ77_12560"
     CDS             complement(<1..>1736)
                     /locus_tag="VKJ77_12560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HMC46146.1"
                     /translation="RIGPKGEGRFEAVSWDEALTFAAERLNEIAVRAPEAILPYSYAG
                     TMGLVQGESIAARFFNLLGASRLDRTICAAAGAAGLRYTYGGSLGMHTEYFEESELIL
                     IWGSNSIASNLHFWTRAQEAKRRGARLIAIDPYRSLTAEKCHQHIALKPGTDGALALG
                     MMNVMIGEGLIDQTYIDAYTLGFDQLKARAEAYPPARVAQICGIEEQVVIDLARAFGS
                     TKKASIRLNYGMQRVRGGGNAVRAIACLPSLTGAWRERSGGLLLSSSSWAPVDVNALE
                     RPDLLPGWPSKLPRMVNMNAIGDALLHAGDASFGPKVEALIVYNSNPVAVAPDSAKVA
                     AGFAREDLFTIVLEHFQTDTADYADLILPATTQLEHLDAHKSYGHTHVMANLPAIAPV
                     GESRANTEIFRGLARAMGLTHPALFESDEALASKAFRWDDPALAGVTWDTLKTNGWAQ
                     LKLAEAPFAEGGFHTPSGKCEFFSERLQRAGLEPVPDYLPPYESAEYAPALAARYPLA
                     MISPPARNFLNSSFVNVESLRSTEGEPHLDMHPADAHARQITEGELVRVFNDRGSMQA
                     RVRVTDRAREGV"
BASE COUNT          330 a          559 c          513 g          334 t
ORIGIN      
        1 tacgccttca cgcgcgcgat cggtcacccg cacacgcgcc tgcatcgaac cgcggtcgtt
       61 gaatacccgc acgagttcac cttcggtgat ctgacgagcg tgagcatcgg cgggatgcat
      121 gtcgagatgc ggctcaccct ctgtcgatcg caggctttcc acattgacga agctgctgtt
      181 gaggaagttc cgcgcaggcg gcgagatcat cgctagcgga taacgcgcgg cgagtgccgg
      241 cgcgtattcg gccgattcgt acggcggcag gtaatcgggc actggttcca gccccgcacg
      301 ttgcaaacgc tcactgaaaa attcgcattt ccccgatggc gtgtggaaac cgccctcggc
      361 gaacggcgcc tccgccagct tgagttgcgc ccagccattt gtcttcagcg tgtcccaggt
      421 cacgccggcc agcgcgggat cgtcccagcg gaatgccttc gatgccagcg cttcatcgct
      481 ttcgaatagc gccggatgcg taagccccat cgctctggcc aggccgcgga aaatctccgt
      541 gtttgccctc gactcgccca ccggagcgat ggccggcaag ttcgccatca cgtgcgtgtg
      601 gccgtatgac ttgtgggcat cgaggtgctc tagctgcgtg gtcgccggca ggatgaggtc
      661 ggcgtagtcg gcggtatcgg tctggaaatg ttcgagtacg atagtgaaca gatcctcacg
      721 cgcgaaccct gccgcgacct tcgcggaatc cggggcgact gcgaccgggt tcgagttgta
      781 gacgatcagc gcttcgactt tcgggccgaa gctggcgtca ccggcgtgca gcaacgcgtc
      841 gccgatagca ttcatattca ccatacgcgg cagtttcgac ggccatcccg gcagcaagtc
      901 cggccgttcg agcgcgttga catcgaccgg cgcccaactc gacgacgata gcagcaagcc
      961 ccccgaccgc tcgcgccatg cgcccgtaag cgaaggcaga caggcgatcg cgcgaaccgc
     1021 attgccaccg cctcggacgc gctgcatacc gtagttgagg cgtattgacg ctttttttgt
     1081 cgatccgaaa gcccgcgcga gatcgatcac aacctgctct tcgatcccgc atatttgcgc
     1141 aacacgcgcc ggcggataag cttcggcgcg ggccttgagt tgatcgaagc cgagtgtgta
     1201 ggcgtcgatg tacgtctgat cgatcagccc ttcgccgatc atcacgttca tcatgccgag
     1261 cgccagcgcg ccgtccgtac cgggtttcaa cgcaatgtgc tgatggcatt tttcagccgt
     1321 cagcgagcgg tagggatcga tagcaatcaa tcgcgcaccg cggcgcttgg cttcctgcgc
     1381 gcgcgtccag aagtgcagat tcgatgcgat cgaattcgat ccccagatca ggatcaattc
     1441 gctttcctcg aaatactcgg tatgcatgcc gagacttccg ccatacgtgt aacgcaagcc
     1501 cgcggcacca gcagcagcgc agatggtgcg gtccagacgc gacgcgccaa gcaaattaaa
     1561 aaagcgcgca gcgatactct cgccttgcac caggcccatc gtgccggcgt agctgtaagg
     1621 caagatggct tcgggcgcgc ggactgcgat ttcattcagc cgctcagcag caaatgtcag
     1681 cgcttcatcc cagctcaccg cttcgaaccg gccctctccc ttcggaccaa tgcgac
//
LOCUS       DATGBK010000900         1748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_219190, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000900 DATGBK010000000
VERSION     DATGBK010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219190"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1135)
                     /locus_tag="VKJ77_12565"
     CDS             complement(<1..1135)
                     /locus_tag="VKJ77_12565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46147.1"
                     /translation="MQPASANTNTVKLAVRRWWTIMPIVFITYSLAYLDRANFGFASA
                     AGINHDLGISKGLASLIGALFFLGYFFFQIPGAIYAERRSVKKLVFVSLILWGGCAAL
                     TGVVTNIPSLMVLRFMLGVVEAAVMPAMLIFISNWFTKSERSRANTFLILGNPVTVLW
                     MSVVSGYLINSFGWRHMFVVEGAPAIIWAVIWWFIVQDKPAQVKWLSDQEKRDLDNTM
                     RAEQAAIKPVKNYGEAFKSPAVIKLSAQYFCWSIGVYGFVLWLPSILKNASTFGMVET
                     GWLSAVPYLAATIAMIAASWASDKLERRKLFVWPFLLIGAFAFAGSYLLGSTSFWGSY
                     ALLVIAGAAMYAPYGPFFAIVPELLPKNVAGGAMALINSMGALG"
     gene            complement(1194..>1748)
                     /locus_tag="VKJ77_12570"
     CDS             complement(1194..>1748)
                     /locus_tag="VKJ77_12570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HMC46148.1"
                     /translation="LGFHMAREMRKAGKTISFDPNLRPTLWPSREAMAESLNALAALA
                     DWVMPGVSEGKILTGFTKPEDIARFYLDQGAKGVVVKLGAHGAYFRTADNDEGTVPAI
                     PVKNVVDTVGAGDGFAVGVVSALLEGRDVRHALTRGNRIGALAIQVIGDSEGLPTRSE
                     LDALEQAGGNGAQASGEAAANAAL"
BASE COUNT          360 a          579 c          500 g          309 t
ORIGIN      
        1 atccaagcgc gcccatgctg ttgatcagcg ccattgcgcc gcccgccacg ttcttcggca
       61 acaactccgg cacgatcgcg aagaacggac cgtaaggcgc gtacatggcg gcaccggcga
      121 tcacgagcag cgcgtaggag ccccagaaac tcgtcgatcc aagcaagtat gatcccgcga
      181 aagcgaacgc gccgatcagc aggaacggcc atacgaacaa cttgcggcgc tcgagtttgt
      241 ccgacgccca ggacgccgcg atcatcgcaa tggttgccgc gagatacggc acggccgaca
      301 gccagcccgt ctcgaccatg ccgaacgtgg aagcgttctt gaggatcgac ggcagccaca
      361 acacgaagcc gtacacaccg atgctccagc agaaatattg cgcggacagc ttgatcaccg
      421 cgggcgactt gaacgcctcg ccatagttct tgaccggttt gatcgccgct tgttccgcgc
      481 gcatcgtgtt atccagatcg cgtttttcct ggtcggaaag ccatttaacc tgcgccggct
      541 tgtcctgcac gatgaaccac cagatcaccg cccagatgat ggccggcgcg ccctccacca
      601 cgaacatgtg gcgccagccg aatgaattga tcagataacc cgataccacc gacatccaca
      661 acaccgtcac cgggttgccc aggatcagga aggtattggc gcgcgaacgc tcggatttcg
      721 tgaaccagtt ggaaatgaag atcagcatcg cgggcatcac cgccgcttcc acgacaccga
      781 gcatgaagcg cagcaccatc agcgaaggga tgttggtgac cacgccggtc agcgccgcgc
      841 acccgcccca caggatcagg ctcacgaaca cgagcttctt cacactgcga cgctcggcgt
      901 agatcgcgcc gggaatctgg aagaagaaat agccaaggaa gaacaacgcg ccgatcagcg
      961 atgccagccc cttgctgatg ccgagatcgt ggttgatacc ggccgccgac gcgaagccga
     1021 agttcgcacg gtcgagatac gcgaggctgt acgtgatgaa cacgatcggc atgatcgtcc
     1081 accagcggcg caccgcgagc ttgactgtat tggtgttggc actggctggc tgcatgattg
     1141 tctccgtctt tggcttgtta gctctgtgac tactgagggg ctatgaaggc cctctacaac
     1201 gcggcgttgg cggcagcttc gccgctggct tgcgctccgt tgccgcccgc ttgttccagc
     1261 gcatcgagtt cgctgcgagt cggcagacct tcgctatcac cgatcacctg gatcgccagt
     1321 gcgccgatgc ggttgccgcg tgtcagcgcg tgccgcacgt cgcgcccttc cagcagcgcg
     1381 ctcaccacgc cgacagcgaa accatctccc gcgccgactg tatcgacgac atttttcaca
     1441 gggatcgcag gcaccgtgcc ttcgtcattg tccgcggtcc ggaagtacgc gccatgcgcg
     1501 ccgagcttga ccaccacgcc cttcgcgccc tgatccagat aaaaccgggc gatgtcctct
     1561 ggcttcgtga aacccgtcag gatcttgcct tcgctcacgc ccggcatgac ccagtcggcc
     1621 aacgcggcta gcgcgttcag cgactccgcc atggcttcac gcgatggcca aagcgtcgga
     1681 cgcaggttcg gatcgaagga aatggtcttg ccggccttgc gcatctcccg cgccatatgg
     1741 aacccgag
//
LOCUS       DATGBK010000901         3568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_10612, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000901 DATGBK010000000
VERSION     DATGBK010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3568
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10612"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            261..1358
                     /gene="zapE"
                     /locus_tag="VKJ77_12575"
     CDS             261..1358
                     /gene="zapE"
                     /locus_tag="VKJ77_12575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011402415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HMC46149.1"
                     /translation="MNVNEYYEHELQTRGYQSDAAQLAAVERLQRCYDEWVAYKARRS
                     NAFKKLIVHPELPRGVYMWGGVGRGKSFLMDSFFAVVPVQRKTRLHFHEFMREVHREL
                     EELKGTADPLDELARRVAKRYRLICFDEFHISDIADAMILYRLLDRLFGAGVQFVMTS
                     NYDPDLLYPDGLHRDRLLPAIELIKSKLDVINVDAGTDYRKRTLSQVTAYHTPLGAAA
                     DKALRADFAKLAAVPDESPILRIEKRELKALRKADGVVWFDFATLCGGPRSQNDYLEL
                     ASRFHAVILSEVPKMSPRNASEARRFTWLIDVFYDHKVKLLMSAEVPAEELYVEGPMA
                     NEFARTVSRITEMQSKEYLESERRLVDTSLT"
     gene            1525..2010
                     /locus_tag="VKJ77_12580"
     CDS             1525..2010
                     /locus_tag="VKJ77_12580"
                     /inference="COORDINATES: protein motif:HMM:NF024736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HMC46150.1"
                     /translation="MKPYRDMSDEEWQMVAPLLPELRPRSELRGRPLANTRAVLNGVL
                     WVMYSGASWSTLPRKYPSYQTCHRRFKAWHDSGVLGRVMQQLFGVASEGLYSLMTSRM
                     RVPTELPEGLGGHAVAANPTRPAEMHGDARPMLMPLVPLVPITPAELVEYPRGGVRHA
                     A"
     gene            complement(2121..2594)
                     /locus_tag="VKJ77_12585"
     CDS             complement(2121..2594)
                     /locus_tag="VKJ77_12585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010092525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HMC46151.1"
                     /translation="MRGLTQRAHRHVGRILLAGALLASAATSMAQAASPMGLWQTIDD
                     KTGQPKALVQIVQDGDGTLTGKILTGLGSNDDPNRRCTACTDSRKDQLMKGMTIINGM
                     KADGDTWDGGQILDPENGKLYKCKMHLDDGGQKLVVRGYIGVSLLGRSQTWIRQQ"
     gene            complement(2754..>3568)
                     /locus_tag="VKJ77_12590"
     CDS             complement(2754..>3568)
                     /locus_tag="VKJ77_12590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HMC46152.1"
                     /translation="DNPGLPSYIERTVINDKAGLSASYPFVLSNTRSLLGTVGAYASH
                     DEDRYKNTITGAQLGQRSQVRVTTLQLDYTGVDTGTVRRASLNVAKAFDVLGASKSAD
                     TNIPGVVTTNPASLTFVRTGATVSQTNEWPFKIGTSIAATGQYSADSLPTSEQIAFGG
                     QRFALGYQPGEVSGDSGWAASAEINRPFAIGLAFMKTFTPYVSVDTAHTYLHAAGAKP
                     SRLASIGVGFRISDAKYYSLDLSLAKPVGDAPVEGNGSRSPRVNATFSYQFN"
BASE COUNT          657 a         1014 c         1113 g          784 t
ORIGIN      
        1 aaggcggcat cggaagatat cggccggatc tgccatccgc acccatcgtt gtcggaagtg
       61 atgcgcgaag ccgcgctcgc cgtcgacaaa cgcgcgctca acatgtaatt gctgcatcgt
      121 ttgagcagca cgacgaaggc gggcgggagt tttcccgctc gcctttgttt tatccacggc
      181 cgttagcttc cctagctcat ttggctcact catttgactc actcatttga cttacttcgg
      241 ggcacccaga ccctcgcacc atgaacgtca acgaatacta cgaacacgaa ctgcagacgc
      301 ggggttatca gtcggacgca gcgcaactgg cggcggtcga gcgcttgcaa cgttgctacg
      361 acgagtgggt cgcgtacaag gcgcgccgct cgaatgcgtt caagaagctg atcgtgcacc
      421 cggagttgcc gcgtggcgtc tacatgtggg gcggcgtggg gcgcggcaag agcttcctga
      481 tggacagctt cttcgcggtc gtgccggtgc agcgcaagac acgcctgcat ttccacgagt
      541 tcatgcgcga ggtgcatcgc gagctggagg agctgaaggg cacggccgat ccgctcgatg
      601 aactcgcgcg acgtgtggcg aagcgctacc ggctgatctg cttcgacgag tttcatatct
      661 cggatattgc cgatgccatg attctttacc ggctgctcga ccgcttgttc ggcgccggcg
      721 tgcagttcgt gatgacgtcg aactacgacc ctgacttgtt gtatcccgat ggtttgcatc
      781 gagatcggtt gctgcctgct attgagctga tcaagtcgaa gctggacgta atcaatgtcg
      841 acgccggtac ggattatcgt aagcgtactt tgtcgcaagt gacggcttat cacacgccgc
      901 tgggcgctgc cgccgacaaa gcgctgcgtg ccgacttcgc gaagcttgcc gcggtgccgg
      961 acgaaagccc gatcctgcgc atcgagaagc gcgaactcaa ggcactgcgc aaagccgatg
     1021 gcgtggtctg gttcgacttc gccacgctct gcggcggccc gcgctcgcag aacgattacc
     1081 tcgaactggc gagccgcttt catgcggtga ttctctctga agtacccaag atgtcgccgc
     1141 gcaatgcatc ggaggcacgg cgttttacgt ggctgatcga cgtgttctat gaccacaagg
     1201 tgaagctgct gatgtcggct gaggtgcccg cggaagaact gtacgtggaa gggccgatgg
     1261 ccaatgagtt tgcccgcacg gtctcgcgga ttaccgagat gcagtcgaag gaatatctgg
     1321 agtcggagcg tcggctggtg gacacatcgc tgacctgacg cagcgttggc cgaacggccg
     1381 agttgacaat gcgagactca taatttcgtc gcgagcttac tgctgtaagg ctctggaccg
     1441 tatttcaaga ttcggacatg tcttattccg gggtgtcggg cggatcggta tcttctaatc
     1501 acttacttgt gattggagag aaccatgaag ccttaccgcg atatgtccga cgaagaatgg
     1561 caaatggtcg cgcctttgtt gccagagttg cggccccgtt ccgagttgcg cgggcggccg
     1621 ctcgccaata cacgtgcagt gcttaatggc gtgctctggg tgatgtacag cggcgcttca
     1681 tggtcaacgt tgccgcgcaa atacccgtcg tatcagacgt gtcaccggcg cttcaaggca
     1741 tggcacgact ccggtgtgct tgggcgtgtg atgcagcagt tgttcggcgt ggcgagtgaa
     1801 ggtttgtact cgttgatgac ctcgcgcatg cgagtgccaa cggagttgcc tgagggattg
     1861 ggcggccatg cggttgcggc gaatcccacc cggcctgccg agatgcatgg cgacgcacga
     1921 cccatgctta tgccgctggt gccgctggtg ccgattaccc cggccgaact ggttgaatac
     1981 ccgcggggcg gtgtgcgtca cgcggcttga tataggacgt gatacgggag cgaagatcgc
     2041 tcgcgcataa aagacccgtc aggagacttc gagtctcctg acgggtcttg ttttgcgtca
     2101 cgcacctgga cgctgcgttc ctactgctgt cgaatccagg tttgcgaacg tccgagcagc
     2161 gacacgccaa tatatccgcg caccacgagt ttctgtccgc cgtcgtccag gtgcatcttg
     2221 catttgtaca acttgccgtt ctcggggtcg aggatctggc caccgtccca cgtgtcgcca
     2281 tcggctttca tgccgttgat gatggtcatg cctttcatca actggtcctt gcgtgaatcc
     2341 gtgcaggccg tgcaacggcg gttcggatcg tcgttgctgc cgagtccggt gaggatcttg
     2401 ccggtgagtg tgccatcgcc gtcctggaca atctgcacaa gcgccttggg ctgaccggtc
     2461 ttgtcgtcga tggtttgcca gagtcccatg ggcgatgcag cttgcgccat gcttgttgcg
     2521 gccgaggcga gtagtgcacc agcaagcagg atgcgtccga catgccggtg cgcgcgctgg
     2581 gtaagtcctc tcatgcttcc tccttgaggt aaaacgtctc ttgatatgtt gaccatgttg
     2641 tcattattgc cggccgcgca ggcgcagcgt gccggacaga atacgacaaa gcatggggag
     2701 cgttttgtac aaaccctcta gtcgggcagg ttgttcgtca gggtcttccc atgtcaattg
     2761 aattggtagg aaaaggtcgc gttgacgcgc gggctccgtg atccgttccc ttccaccggg
     2821 gcatcgccaa ccggtttcgc cagcgataaa tccaggctgt agtacttggc atcggagatc
     2881 cggaagccca cgcctatcga tgccaggcgg ctcggtttcg caccggcggc gtgaagatac
     2941 gtgtgggcgg tatcgacgga aacgtagggt gtgaaggtct tcatgaacgc cagtccgatc
     3001 gcaaacggcc ggttgatttc cgccgatgcg gcccatccag aatcgcccga tacttctccc
     3061 ggctggtaac cgagcgcgaa gcgctgtccg ccaaacgcga tctgctccga cgttggcagg
     3121 gagtccgcgc tgtactgacc ggttgctgcg atcgaggtgc cgatcttgaa cggccactca
     3181 ttggtctgcg aaaccgtagc accagtgcgc acgaacgtga gtgacgcagg gttggtagtg
     3241 acgacccccg gaatgttggt gtccgccgac ttcgacgccc caagcacatc gaacgctttc
     3301 gcgacgttca ggctcgcacg ccggaccgtt cccgtatcca cgccggtgta gtcgagttgc
     3361 aacgtcgtca cacgcacttg cgaacgctgg ccaagttgtg cgcccgtgat ggtgttcttg
     3421 tagcggtcct cgtcgtgcga tgcgtatgcg cccaccgtgc caagcaggct gcgcgtgttg
     3481 ctcaacacga acggatacga cgcggacaag cctgctttgt cgttgatgac ggtgcgctcg
     3541 atgtaagagg gcaggccggg gttatcga
//
LOCUS       DATGBK010000902         2826 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_265567, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000902 DATGBK010000000
VERSION     DATGBK010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265567"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..1109)
                     /locus_tag="VKJ77_12595"
     CDS             complement(138..1109)
                     /locus_tag="VKJ77_12595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC46153.1"
                     /translation="MESNSNDSRGQHQYRSVFRPGLFAGKVVMVTGGGSGLGRCTAHE
                     LVSLGAAVILVGRSLTKLETVRDELAEDYPESAERVRCYSCDIRDEASVKQVVATALA
                     DFNRLDGLFNCAGGQFPAPLDKISLNGWDAVVRNNLHGTFLMSRECFTQWMRDQGGAI
                     VNMLADIWGGMPGMGHSGAARAGVWNFTETAACEWGYAGVRVNAVAPGWIASAGMDSY
                     DERYRALLRELKHKVPLQRFGTESELAAAAVFLLSEASAFINGTVIRVDGGVPNARHS
                     WPLAAAGRTLEFNGFSRYRPPAGLQETADPDASNHSNDEAAPSSAGD"
     gene            1286..2011
                     /locus_tag="VKJ77_12600"
     CDS             1286..2011
                     /locus_tag="VKJ77_12600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC46154.1"
                     /translation="MTQPKTLAARRAPSSVKSEQRIKDILLVARQVFSERGYASATTI
                     DMARRLGVSEATVFTYFSGKRDLCVRVICDWYDEIIAEIEATLPHITGTRAKLFFLIR
                     THLYRLMIDGPGLCALILSEGRAKDDTFGDEIVQLQRRYTAPLMQVLSDGVAAGDIRD
                     DLPLSLLRSSIYGPMEHVLWDAIAKKTVDIEETSKRLSLLLWQGLQPPNQKVAALGQL
                     HRDVAGALRAFDAAVEAPPTSPE"
     gene            2422..>2826
                     /locus_tag="VKJ77_12605"
     CDS             2422..>2826
                     /locus_tag="VKJ77_12605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HMC46155.1"
                     /translation="MLRKTPLAAAIMTVVATPAVVPLYAHAQAAPVSKTDQTAQAQQA
                     AQAAPPVENAALPAVHVSGQAIAPDFQPEKSSVGAKVPTALRDIPQAVVVVPKAVLQS
                     QAATSFSDALRNVPGVTLGAAEGGQIGNNINLR"
BASE COUNT          571 a          901 c          802 g          552 t
ORIGIN      
        1 gaaccatcgg cccatttatc acaggcgtcc acgccgatgt tgtagcgcgc gggcaccttc
       61 cacgcgaagg ccgcggcgag ggtttcatat gaatcggctg cgggaagcat cgcttctccc
      121 tggttttcgg ttgcgtctca atcgccggcg ctggatggcg cggcttcatc gtttgaatgg
      181 tttgaagcgt cggggtcggc cgtttcttgc aaccccgccg gcggccgata gcgcgaaaat
      241 ccgttgaatt ccagcgtacg cccagcggcc gccaagggcc acgaatgccg tgcgttcggc
      301 acgccgccat caacgcgaat caccgtcccg ttgataaacg ccgacgcctc ggacaataaa
      361 aataccgccg ctgctgcgag ttccgattcg gtcccgaagc gctgcaacgg caccttgtgc
      421 ttaagctcgc gcagcaacgc gcgataacgt tcgtcgtaac tatccatgcc cgccgatgca
      481 atccatcccg gcgccacggc attcacccgc acgccggcgt aaccccattc gcacgcggcc
      541 gtttccgtga agttccagac gccggcgcgc gcggcgcccg aatggcccat gccgggcatg
      601 ccgccccaga tgtccgcgag catgttgacg atcgcgccgc cttgatcgcg catccattgc
      661 gtaaaacatt cacgtgacat caggaaggtg ccgtgcaggt tattgcgaac gacagcgtcc
      721 cagccgttca gggaaatctt gtcgagcggc gcgggaaact ggccacccgc gcaattgaag
      781 aggccgtcga gccggttgaa atcagcgagt gccgtagcga cgacttgttt gacgctcgct
      841 tcgtcgcgga tatcgcagga gtagcaacgc acgcgttcgg cgctttcggg gtagtcctcg
      901 gccagctcgt cgcgcacggt ttccagcttc gtcaggcttc gtccgaccag gatcaccgca
      961 gcccccagcg acacgagttc gtgcgcggtg catcggccga gcccgctgcc tccgcccgtc
     1021 accatgacaa ccttgccggc gaacaggccg ggacggaaga cggagcggta ttgatgctga
     1081 ccgcgggagt cgttcgaatt ggattccatg attctcaacg tgaccgggcg agtgcgccgc
     1141 aatacgattg agtaaaactc aactacataa catcgtcaag ccggttaaac cttaatattc
     1201 ttcataatat cgactaaatt tcactataat ttcaattgag ctgaactcaa aacattaccc
     1261 ctgacggtcg actttcgtcg cctatatgac ccaacccaaa accctcgccg cacgccgcgc
     1321 accgtcgagc gtcaagtccg aacaacgcat caaggacatc ctgctcgtgg cgcggcaagt
     1381 gttctcggag cgcggatatg catcggcgac aacgatcgat atggcgcgtc ggcttggggt
     1441 atcggaggcg acggtgttca cgtatttctc cggcaagcgc gacctgtgcg tgcgggtgat
     1501 ctgcgactgg tacgacgaga tcatcgcgga gatcgaggcc acgctgccgc acatcacggg
     1561 cacgcgcgcg aagttgtttt tcctgatccg cacacacctg tacaggctga tgatcgatgg
     1621 gccggggctg tgcgcgctga tactgtccga agggcgcgcg aaagacgaca ccttcggcga
     1681 tgaaatcgtg caactccagc ggcgctatac cgcgccgctg atgcaggtgc tgtcggatgg
     1741 cgtagcagcc ggtgatatcc gcgacgacct gcctctgagc ctgctgcgct ccagcatcta
     1801 tggaccgatg gaacacgtgc tatgggacgc gatagccaag aaaacggtgg atattgaaga
     1861 gacatcgaag cgcttgtcgc tgcttctttg gcagggtttg cagccgccca accagaaagt
     1921 cgcggccctt gggcaattgc atcgcgacgt ggcgggggcg ctcagggcgt ttgatgcggc
     1981 ggttgaagcc cccccgacct cgcctgaatg aaagctctgt ttttgtaaga tcattacggt
     2041 tgactgcgac ctgcacagcg ccattggtta ccgtccacgc tccggcataa cgcctctcat
     2101 ctccgcccac aacgcaccac cctctgcggc acgttttaca ttctccgata aaaccacctc
     2161 gcgaaaaaac gcggggcctt ggtccgtcag ccatccgcat agttcccgaa gtcgtattga
     2221 aaacaattct tacttgtgta atgatattga ttcgcatttc acaaatatca gataaccggc
     2281 gcacgtcctt cgaaacgacg gccctctgct tcggctgcgc ctgttgccaa ctgctcacgc
     2341 cgccgcgggc atcgcggaag taattgaccg gcatggcgca acggcgccgg cttttcgact
     2401 atccagtact cggggaaaca catgttgagg aagacaccgc ttgccgcggc aatcatgacc
     2461 gtggtggcga cgcctgctgt cgtaccgctt tatgctcacg cgcaagccgc tccggtcagc
     2521 aagaccgatc agaccgccca ggcgcaacaa gccgcacaag ccgccccccc cgttgaaaac
     2581 gccgcgctgc cggccgtgca tgtctccggt caggccatcg caccggattt tcagcccgaa
     2641 aaatcgagcg tcggcgccaa ggtccctacc gcgttgcgcg atattcccca agcggtcgtg
     2701 gtggtcccta aagccgtgct gcaatcccag gcggccactt ctttctccga tgcccttcgc
     2761 aacgtccccg gcgtcaccct tggcgcggcg gaaggcgggc agattggcaa caacatcaac
     2821 ttgcgc
//
LOCUS       DATGBK010000903         6175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_172921, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000903 DATGBK010000000
VERSION     DATGBK010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6175
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172921"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..739
                     /locus_tag="VKJ77_12610"
     CDS             164..739
                     /locus_tag="VKJ77_12610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017233896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ANTAR domain-containing protein"
                     /protein_id="HMC46156.1"
                     /translation="MLRVLLVTDTDKPIGDLRQALARLGYDMLAEVATPAALPKVVEE
                     QRPDVVIIDTESPSRDTLEQLAVMNETAPRPVLMFSNDGDQQLIHAAVGAGVSAYLVE
                     GLEAARLAPILEVALARFARDEQLRKRLADAENELADRKLIDRAKRLLMDRRRMSEPE
                     AYAMLRKRAMDEGMKLAEVARQLVSMVDLLG"
     gene            749..1900
                     /locus_tag="VKJ77_12615"
     CDS             749..1900
                     /locus_tag="VKJ77_12615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013343002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CmpA/NrtA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC46157.1"
                     /translation="MNTPTAALNRASEQPEKTHIRLGFVALSDVAPLAVAKILEFGHS
                     HGLTLELCRQPSWAAVRDKLLSGEIDAAHALYGLVYGVQLGIGGPQGDMAVLMVLNRN
                     GQAITLSNPLADALSRSGNLKEALASLGRPPVFAQTFPTGTHAMWLYYWLAALGVHPL
                     RDIRSIVIPPSQMVDALAEGQLDGFCVGEPWNAVAEARHAGRTVAITSQIWPDHPEKV
                     LASRRDFVALYPNTARALVQTMLEACRWLDDPAHREDISTWLAAPELVGVPQELIAPR
                     LLGEYDAAQFPVQPPPVSFFDKGAVNYPRPSDGLWFLTQYRRWGLLNGDHDDAAIASA
                     ISQTALYREAAALADVRVPDEIRADVLVDGRIWDGQDPAAYLDGFAMRA"
     gene            2273..3637
                     /locus_tag="VKJ77_12620"
     CDS             2273..3637
                     /locus_tag="VKJ77_12620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HMC46158.1"
                     /translation="MSTLSTEKIQAAVKKDASWVMGALKKFGEDRCAAMAASIAFYSA
                     FSLAPTLVMVIAVAGWVFGADAARGQLFHQVNGLLGDQAAASVQSIVENAHRSGGTGV
                     AAVISFVLLAVGASATFSSLNTALNLVWPLTGEQKSSVFALVRVRLISFGLVLGVAFL
                     LIVSLVLDTAIQAVGTWLWGNSPFVIIGDIVQLVVGLVILSLAFGALLKFLPDGRVEW
                     RDALVGGFVAAILFSVGKKLFAFYLTHAGTANSFGAAGSLAVLLMWLYFSAAVLLLGA
                     EFSAARARLHDPRGAWGQQSSRVPPGSRAKIGSMLAGSTVPGAGRKDADANNPGTTKA
                     FTVVPGHARASIERLAERSQHLTQQARQRVSALSTALTLSRKLARAETAATRVTAQAM
                     LDCGRKAVQANELVKRYPWRAVLMAGGAGLALALLKGRDLGRESGRESGREPEPGRPA
                     ANDE"
     gene            4278..5453
                     /locus_tag="VKJ77_12625"
     CDS             4278..5453
                     /locus_tag="VKJ77_12625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015603832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC46159.1"
                     /translation="MKRFALTSLSLALLGTAGVAHAQNSVTLYGVIDTGLIYVHNANG
                     NEKQIGTNSGTLSGDRWGLKGQEDLGGGLKAIFQLENGFDVNTGKLNQGGREFGRQAF
                     VGLTSDKLGTITLGRQYDPLVDMVQGITGDNYWASIVGTPGDVDNYDNSSRVNNGVKY
                     VSANYAGLQFEGLYGFSNGAGTTGQGQTWSGAVAYNNGPLGLAAGYYYTSNPSAGRSA
                     TTWNSPSSDSIFDSPINSGYASAHSIGIARAAAQYAIGPVTFGGSYSNAKYRPDGFSA
                     FTSTETYNIGSLFANYQLTPALLIGTGYTYEKASGDTAAKYHQVGIGADYTLSKRTDF
                     YALGAYQHASGTQATFTTNAAGQTVRVDQAAQASIGSFGFAGTSTQEMVIVGIRHKF"
     gene            complement(5721..>6175)
                     /locus_tag="VKJ77_12630"
     CDS             complement(5721..>6175)
                     /locus_tag="VKJ77_12630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HMC46160.1"
                     /translation="QVSPYFQIGESKYGKPIIDRVVTPATPLDEVAKCALVSMDSTLR
                     SNLSVGLPLDLLVYEKDALQVTRFSTIDNDNQYFQMIHRTWGERLRQIFGEIPNPTWA
                     DPANVPLRARETVSNVPRLTNNDLRAEPDTSAPPFQTLMQPASGQGQH"
BASE COUNT         1200 a         1877 c         1864 g         1234 t
ORIGIN      
        1 gccctcaacg catggcaaga catcactgaa gcggttcagc atgcagcctg actggcgcga
       61 actgcatcga gcagcgcaag cggtttttat ggattgcgct gacgcgccgc cggcgagcat
      121 tgcggcatgc cttccatgca tgagctatcc cggcgcctga cccatgcttc gcgtactgct
      181 cgtcaccgac accgacaaac ccattggcga tcttcgccag gccctcgcgc gcctgggcta
      241 cgacatgctg gccgaggtgg cgacccctgc ggcattgccc aaggtggtgg aagaacagcg
      301 cccggatgtg gtcatcatcg atactgaatc gccttcacgc gatacgctcg aacaactcgc
      361 cgtgatgaac gagaccgcgc cacgcccggt cctgatgttc agcaacgacg gcgaccagca
      421 actgattcac gccgcggtcg gtgcaggcgt gagcgcttat cttgtcgaag gcctggaggc
      481 cgcgcgtctc gcacccatcc tcgaagtcgc gctggcgcgt ttcgcccgcg atgagcaatt
      541 gcgcaagcgg ctcgccgacg ccgaaaacga actcgccgac cgcaagctga tcgaccgggc
      601 caagcgcctg ttgatggacc ggcgcaggat gtccgaaccg gaggcttacg ccatgctgcg
      661 caagcgcgcg atggacgagg gaatgaagct tgccgaggtt gcgcgccagt tggtgtcgat
      721 ggtcgattta ctagggtagc cctactacat gaacacgccc acagccgctt tgaaccgcgc
      781 gtccgagcaa cccgagaaga cccacatccg cctgggtttc gtggcgctga gcgatgtcgc
      841 cccgctcgcc gttgccaaga tcctcgagtt tggccacagc cacggcctga cgctcgagct
      901 gtgccgtcag ccctcctggg cggccgtgcg cgacaagctg ttgtccggcg agatcgatgc
      961 agcgcacgcg ctttatggcc tcgtgtatgg cgtgcaactc ggtattggcg gaccgcaagg
     1021 cgatatggcc gtgctgatgg tgctgaaccg caatggccag gccatcacgc tatcgaaccc
     1081 gcttgccgac gcgctgagcc ggagtggcaa tttgaaggag gcgctcgcgt cgctcggccg
     1141 tcctccggtc tttgcgcaga ccttcccgac cggcacgcat gcgatgtggt tgtactactg
     1201 gctcgcagct cttggcgtgc atccgctgcg cgacattcgc agcatcgtta tcccgccgtc
     1261 gcaaatggtc gatgcattgg ccgagggcca gctcgacgga ttctgtgtcg gtgagccgtg
     1321 gaacgcggtt gccgaggcgc gtcacgcggg caggaccgtc gcgatcacga gccagatctg
     1381 gccggatcac ccggaaaagg tgcttgccag ccggcgtgat tttgtcgctc tttatccgaa
     1441 cacggcacgc gcgctggtcc agacaatgct cgaagcgtgc cggtggctcg acgaccccgc
     1501 gcatcgcgag gacatctcaa cgtggctcgc cgcaccggaa ctggtagggg tgccacagga
     1561 attgattgcg ccacggttgc tcggcgagta cgacgcagcg caattccccg tgcagccgcc
     1621 ccccgtcagt ttcttcgata aaggcgccgt caactatcct cgaccgtccg atggcttgtg
     1681 gttcctgacg caatatcgcc gatggggctt gctgaacggc gatcacgacg acgccgcaat
     1741 tgcatcggcg atcagccaga ccgcgctgta tcgcgaggcc gctgcattgg cggacgttcg
     1801 cgtgccagac gagattcgcg cggacgtgct ggttgacggg cgcatctggg acggacagga
     1861 tcccgctgcc tatctcgacg ggttcgccat gcgtgcctga cgctatggga gcgttcgtcg
     1921 ctggctgcaa cggctcggcg atgcgcgtca ccgcgtgatg gcctggcctt cattcggccg
     1981 tccacgtgcg aattactctg ctcctccccg cgccgattga aagacccgct ggccctgaac
     2041 gtaaaacttc gtagaacaat ctcgacgatt ggtgacgaag gtgcgcgcct aaggcatcca
     2101 aacggcctat gagcccggtt tcggttgcca agcggcgacg ggatgacgga tgcttcatac
     2161 ctcccggcac gcagtggcag aaccaaagcc ttgccgaccg tggaacgcat cctgctctga
     2221 cgcattacaa accgtcaaga tcatcatcac catcatcgaa gttgaggttt ccatgagcac
     2281 gttgtccacc gagaaaattc aggctgcggt gaaaaaggac gcctcctggg tgatgggcgc
     2341 gctcaagaaa tttggcgagg atcgctgtgc cgccatggct gcgagcattg cgttctactc
     2401 cgcgttttcg ctggcgccaa cgctggtcat ggtcatcgca gtggccggct gggtgttcgg
     2461 ggccgacgcc gcgcgcggcc agttgttcca tcaggtcaat gggctgctcg gcgatcaggc
     2521 cgcggcgagc gtgcagagca ttgtcgagaa tgcccaccgc agcggcggca cgggagtcgc
     2581 cgccgtgatc tcgttcgtgt tgctggcggt gggtgcatcg gcgacatttt catcgctcaa
     2641 caccgcgctg aacctcgtat ggccactgac cggcgagcag aaatccagcg ttttcgcgct
     2701 ggtgcgcgtg cggctgatct cgttcggtct ggtgctgggg gtggcgttcc tgctgatcgt
     2761 ctcgctagtc ctcgataccg ccatccaggc ggtgggcaca tggctttggg gtaattcgcc
     2821 cttcgtgatc atcggcgata ttgtgcagtt ggtagtcgga ctggtgattc tctcgctcgc
     2881 gttcggggcg ctcctgaagt tcctccccga cggccgggtg gaatggcggg acgcactggt
     2941 cggcgggttt gttgccgcaa tcctgttttc cgtcggcaaa aaactgtttg cgttctacct
     3001 gacacacgcc ggcacagcga attcattcgg cgccgccggc tcgctcgccg tgctgctgat
     3061 gtggctgtac ttctcggccg cagtcctgct gctcggcgcg gagttttcag ccgcgcgagc
     3121 ccgtttgcac gatccccgcg gtgcgtgggg ccagcaaagc tcccgggtcc cgccgggcag
     3181 ccgcgccaag atcggctcga tgctggcggg ctcgacggta cccggagccg gccgtaaaga
     3241 cgcagatgcg aacaatccag ggaccacaaa agcctttacg gtcgtgccag gacatgcgcg
     3301 ggcatccatc gaacggctgg ctgaacgctc gcagcatttg acgcagcagg cgcgccaacg
     3361 ggtgtcggcg ctgagcaccg cgttgaccct gagccgcaag ctggcccgtg cggaaaccgc
     3421 tgcgactcgg gtgacagcgc aggccatgct ggattgcggg cgtaaggcgg tgcaagcaaa
     3481 cgaactggtg aaacggtatc cgtggcgcgc cgtgttgatg gccggcggcg caggattggc
     3541 gctcgcgctg ttaaagggcc gcgatctcgg ccgtgaatct ggccgtgaat ctggccgcga
     3601 accagaaccc ggccggcccg ctgcaaatga cgaatagacg aatgacgccc gccaagccgg
     3661 gcggcgggat ccagagcggg acaagtccag gtcccgaacc ggcgtgatcc gcggcacggc
     3721 agttttccgt gtcaaaggct tgactgcgca aaacttgcgt ccaatcgcat ggacgtgtcg
     3781 cgatgcaaag gcacagcgcc tttgttgcgc caaatgcaaa aatgacgctt tcaatgggta
     3841 agcatgttgg taatacacaa cgcacgcatc cggctcaggg cgttggactt ggcttgacct
     3901 cgccgatccg ccacccggcg taaaccctcg ccgagccata tgcagcgctc ctcttgcccg
     3961 tcagagatct cctcgcgggc ggcgccagcc cacctcgctt ataacggcca attagtaaaa
     4021 aactaataaa aatcgctgat tctcgttgaa tcaattgcat taaaaggaac tttctgaacg
     4081 cagctttgtc tgcctgcttt cactagatga atcataagct aaagccttga caggcttgcc
     4141 ttacaagaca tcaaacgatc gaccataaag tgtctttttt tcgagacacg ttttaatttt
     4201 tcagttctta agttttgtaa cgctgcgtta ttctctgcgc cggcaacaac gaatttaatc
     4261 ctcgcgtgga gaacctgatg aaacgtttcg cattgacttc cctttcgctg gcactgctcg
     4321 gcacagctgg cgtggctcat gcgcaaaaca gcgtgaccct gtatggcgtg atcgatactg
     4381 gtctgattta tgtccacaac gcgaacggca acgagaagca gatcggcaca aatagcggca
     4441 cgctgtccgg cgaccgctgg ggcctgaaag gccaggaaga tctgggcggc ggtttgaagg
     4501 caattttcca attggaaaac ggctttgacg tcaacacggg caagttgaac caaggcggtc
     4561 gcgaatttgg tcgccaggca ttcgtcggtt tgacgtctga caagctcggt acgatcacgc
     4621 tcggtcgtca atacgatccg ctcgtcgaca tggtgcaagg catcacgggt gacaactact
     4681 gggcgtccat cgtcggtacg ccgggcgacg tcgacaacta cgacaacagc tcgcgtgtaa
     4741 ataacggtgt gaagtacgtt tcggcgaact atgccggcct gcaattcgaa ggcttgtatg
     4801 gtttcagcaa cggcgccggc acgacgggtc aaggccagac gtggagcggt gcagttgcgt
     4861 ataacaacgg cccgttgggc ttggctgccg gttactacta cacgagcaac ccgagtgcag
     4921 gccgttcggc taccacctgg aatagcccgt cgtcagattc gatcttcgac agcccgatca
     4981 acagcggcta cgcatcggct cactcgatcg gcatcgctcg tgcagcagct cagtacgcta
     5041 tcggcccggt aacgttcggc ggttcgtaca gcaatgcgaa gtaccgtccg gacggtttct
     5101 cggcattcac gtcgacggaa acctacaaca tcggcagctt gttcgcgaac taccagctga
     5161 cgccggctct cttgatcggc acgggttaca cgtacgagaa agcgagtggc gacacggctg
     5221 ccaagtacca tcaagtcggt atcggtgcgg actacacgct gtccaagcgt acggacttct
     5281 acgcacttgg cgcttaccag cacgcaagcg gcacgcaagc tacgttcacc acgaacgctg
     5341 ctggccagac ggttcgcgta gatcaggcag cgcaagcatc gatcggttcg ttcggcttcg
     5401 ccggcacgag cacgcaagaa atggtgatcg tcggtatccg tcacaagttc taaagccgga
     5461 cccggcgcgt agcgtttcac tacacgggcg cgccgattcc gactgcggtt caaaaacagc
     5521 catcggcttc gccgatggct gtttttttat gcacgtgggg tattgaccgc tgattcacgg
     5581 cgatcgacag accaaaaccg aagccaaaaa caagaacggc ctgatcgact taagccgatc
     5641 aggccgttct tgttcacgct acctgtcttg cgatacttcc accacgcgct tttaaaccgc
     5701 ctctcctgct cctgtccgaa tcaatgctgc ccttgcccgc ttgccggctg catcagcgtc
     5761 tgaaacggcg gggctgacgt atcgggttcg gcgcgcagat cgttgtttgt caaacgtggc
     5821 acattcgata ccgtttcgcg cgcccgcagc ggcacattgg cgggatcggc ccaagtcgga
     5881 ttcgggattt ccccgaaaat ctgccgcagc cgttcacccc acgtgcgatg aatcatctgg
     5941 aaatactggt tgtcgttatc gatggtcgag aaccgcgtga cctgcaacgc gtccttctca
     6001 tacacgagca gatcgagcgg caatcccact gacaaattgg accgcagcgt ggagtccatg
     6061 gacaccagcg cacatttcgc gacttcgtcc agcggtgtgg ccggtgtgac aacgcgatcg
     6121 atgatcggct tgccgtactt cgattcgccg atctggaaat acgggctgac ctgcg
//
LOCUS       DATGBK010000904         1822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_265575, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000904 DATGBK010000000
VERSION     DATGBK010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265575"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..164)
                     /locus_tag="VKJ77_12635"
     CDS             complement(<1..164)
                     /locus_tag="VKJ77_12635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N utilization substance protein B"
                     /protein_id="HMC46161.1"
                     /translation="MKSARRRSRELATQGLYQWLLSGAPGGEIDAQLRGAQGFDKADQ
                     EHLDAILHGV"
     gene            complement(161..664)
                     /gene="ribH"
                     /locus_tag="VKJ77_12640"
     CDS             complement(161..664)
                     /gene="ribH"
                     /locus_tag="VKJ77_12640"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HMC46162.1"
                     /translation="MEIGQYQPNLDGDGLRIGIVQSRFNEPVCNGLVDACTEELERLG
                     VIGEDVLLVTVPGALEIPLALQKLAESGQFDALIALGAVIRGETYHFELVSNESGAGI
                     SRIALDFGTPVANAVLTTENDEQAVARMTEKGRDAARVAVEMANLSVALEQLGGDDED
                     EDDEDRA"
     gene            complement(710..>1822)
                     /gene="ribBA"
                     /locus_tag="VKJ77_12645"
     CDS             complement(710..>1822)
                     /gene="ribBA"
                     /locus_tag="VKJ77_12645"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009889661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA];
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HMC46163.1"
                     /translation="LVDEEDRENEGDLVIAADFVTPEAINFMARYGRGLICLTLTQDR
                     CRQLNLPLMTQRNGTQYGTAFTVSIEAAEGVTTGISASDRARTIQAAVAHDAKAEHIV
                     QPGHVFPIMAQPGGVLVRAGHTEAGCDLTAMAGLTPASVICEVIRDDGEMARLPDLIE
                     FAELHGIRIGTIADLIHYRSRTESIVERVAERTMQTAHGAFRAVLYRDQPSGSPHIAL
                     VRGQPSPERETPVRVHEPLSVLDLLEVDLSTHSWTLDAAMKEIAARDLGAIVLLNCGD
                     TKEHLVDVFQAFEREDKAAELKRRPVDFKTYGIGAQILRELGVGKMQVLSNPRKLGSM
                     SGYGLEVTGFIPMPGCPATPSTDSADPASIAHLRSV"
BASE COUNT          303 a          573 c          563 g          383 t
ORIGIN      
        1 atcacgccgt gcaggatggc gtccagatgt tcctggtcgg ctttatcgaa gccttgcgcg
       61 ccgcgcaact gcgcgtctat ttcgccgccg ggcgcaccag acagcaacca ttgataaagc
      121 ccttgtgtcg cgagttcgcg cgagcgtcgt cgagcgcttt tcatgcgcgg tcctcgtcgt
      181 cttcgtcttc gtcgtcgccg cccagttgtt ccagcgcgac cgacagattc gccatttcca
      241 ccgccacgcg tgctgcgtcg cggccttttt ccgtcattcg ggcaacggct tgctcgtcgt
      301 tttcggtcgt caggaccgcg ttggcgactg gcgtgccgaa gtcgagcgcg atacgggaaa
      361 tgcccgcgcc gctttcattc gataccaact cgaagtggta cgtttcgcca cggatcaccg
      421 cgccgagagc gatcaatgca tcgaactgac ccgattcagc cagcttttgc agcgccaacg
      481 ggatttcgag tgcacccggc acggtgacga gcaatacgtc ttcaccaatc acgccaagtc
      541 gttccagttc ttccgtgcag gcgtccacga ggccgttgca gaccggctcg ttgaaacgcg
      601 attgcacgat gccgatgcgc agtccgtcgc cgtcgaggtt cggttggtat tgtccgattt
      661 ccattattta tccgttttca gtgtgatgca gtgtggtgat tggcgctggt cagaccgagc
      721 gtaaatgggc gatggaagcg gggtcggccg aatccgtgga aggcgtggcg gggcagcccg
      781 gcatggggat gaacccggtc acctccaagc cgtaacccga catgctgccg agtttgcggg
      841 gattcgacag cacctgcatt ttgcccacgc ccaattcgcg caagatctgc gcgccgatgc
      901 cgtaggtctt gaaatcgacc gggcggcgtt tgagttcggc tgctttgtcc tcgcgctcga
      961 acgcctggaa tacatcgacg agatgttctt tcgtgtcgcc gcaattgagc agcacgatgg
     1021 cgcccaggtc gcgggcggcg atttccttca tcgcggcgtc gagggtccag gagtgcgtgg
     1081 acaagtccac ttcgagcaga tccagcaccg acagcggttc gtgtacgcgc accggcgttt
     1141 cccgttccgg cgacggctgg ccgcgcacca gcgcaatatg cggcgaaccg cttggctgat
     1201 cgcgatacag cacggcgcga aacgccccat gcgccgtctg catggtgcgt tcggcgactc
     1261 gctcgacgat tgattccgtg cgcgagcggt agtgaatcag gtccgcgatc gtgccaatcc
     1321 gaatgccgtg cagttcggcg aattcgatca gatcgggcaa ccgggccatt tcgccgtcat
     1381 cgcgaatcac ttcgcagatc accgatgccg gcgtcaggcc cgccattgcc gtcaggtcgc
     1441 agcccgcttc cgtatgcccc gcgcggacca gcacgccgcc cggttgcgcc atgatcggaa
     1501 acacgtgacc cggctggacg atatgctcgg ctttcgcgtc gtgcgcgacc gctgcctgaa
     1561 tggtgcgtgc ccggtccgag gcggagatgc cggtggtcac gccttcggcc gcctcgatac
     1621 tcaccgtgaa cgccgtcccg tactgggtgc cgtttcgctg tgtcatcaac ggcaagttca
     1681 actggcggca gcggtcctgc gtgagtgtca ggcagatcag tccacggccg tagcgcgcca
     1741 tgaaattgat cgcttccggc gtcacgaaat cggcggcgat gacgagatcg ccttcgtttt
     1801 cgcggtcttc ttcgtcgacg ag
//
LOCUS       DATGBK010000905         6742 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334653, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000905 DATGBK010000000
VERSION     DATGBK010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6742
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334653"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..818)
                     /gene="trpC"
                     /locus_tag="VKJ77_12650"
     CDS             complement(33..818)
                     /gene="trpC"
                     /locus_tag="VKJ77_12650"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HMC46164.1"
                     /translation="MSDILDRIIEVKRGEVRIAQESVSLEELRLQASTRDSRDFVGAL
                     RAKHAEGKPAIIAEVKKASPSKGVIRENFVPADIAKSYERGGAACLSVLTDVQFFKGS
                     IAYLEEARAACSLPVLRKDFIVDPYQVLEARAMGADCILLIAAALQPLQMRDLEAYAH
                     SLGLAVLVEVHDRDELEQSLTLKTPLIGVNNRNLRTFETSIETTIGMLDMVPEDRIVV
                     TESGILSRVDVDRLRAMDVQTFLVGEAFMRADDPGTELARMFF"
     gene            complement(831..1862)
                     /gene="trpD"
                     /locus_tag="VKJ77_12655"
     CDS             complement(831..1862)
                     /gene="trpD"
                     /locus_tag="VKJ77_12655"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006406908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HMC46165.1"
                     /translation="MTITAQEALQRTIEHREIFHDEMLHLMRMIMRGEMSPVMSAAII
                     TGLRVKKETIGEIAAAATVMREFANHVSVPDSDNLVDIVGTGGDGSHTFNISTATMFV
                     TAAAGAKVAKHGNRGVSSKSGSADVLEALGVNIDLKPEQVALSIAETGMGFMFAPNHH
                     PAMKNIAPVRRELGVRTIFNILGPLTNPAGAPNQLIGVFHEDLVGIQVRVMQRLGAKH
                     VLVVYGKDGMDEVSLGAATVVGELRNGEVLEYEIHPEDFGLQMVSNRTLKVADAQESK
                     TMLLGALNNKPCVAREIVTLNAGTALYAANVVESIEAGMALAKEVIASGQAREKVDEL
                     VRFTQQFAK"
     gene            complement(1877..2461)
                     /locus_tag="VKJ77_12660"
     CDS             complement(1877..2461)
                     /locus_tag="VKJ77_12660"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HMC46166.1"
                     /translation="MLLMIDNYDSFTYNLVQYFGELGEDVRTFRNDEITLDEIAKLNP
                     ERICLSPGPSNPQHAGITLDVLREFSGKIPILGVCLGHQAIGEAFGGRVVRAQTIMHG
                     KVSTIETDCRGVFSDLPKHFSVTRYHSLAIERESLPDCLEISAWTPDGEIMGVRHKEL
                     AVEGVQFHPESILSEHGHALLENFVKSPAQGIRA"
     gene            complement(2476..3972)
                     /gene="trpE"
                     /locus_tag="VKJ77_12665"
     CDS             complement(2476..3972)
                     /gene="trpE"
                     /locus_tag="VKJ77_12665"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HMC46167.1"
                     /translation="MTELEFQSLANEGFNRIPLIAEALADLETPLSLYLKLAQTERNG
                     ANSFLLESVVGGERFGRYSFIGLPARTMLRVQNGVSEVVKDGNVIETSQADPLTFIEE
                     FQKRFKIAQRPGLPRFCGGLAGYFGYDAVRYIEKKLAHSAPRDDLGLPDIQLLLTEEM
                     AVIDNLAGKLYLIVYADPTTPEAFTKAKQRLRELRSRLRTTVQPPVTSASVRTETYRE
                     FAKDDYLNAVRKAKEYIAAGELMQVQVGQRLVKPFRDNPLSLYRALRSLNPSPYMYYY
                     NFGGEFHVVGASPEILVRQEKRGEERIVTIRPLAGTRPRGNTPERDAELATELLNDPK
                     EVAEHVMLIDLARNDVGRIAQTGSVVVTDKLAIEKYSHVQHIVSSVEGKLKPGTTNFD
                     VLRATFPAGTLSGAPKVRAMEIIDELEPVKRGLYGGACGYLSFTGEMDLAIAIRTGLI
                     HKGNLYVQAAAGVVADSVPESEWQETENKARAVLRAAEQVQDGLDSDF"
     gene            complement(4371..5120)
                     /locus_tag="VKJ77_12670"
     CDS             complement(4371..5120)
                     /locus_tag="VKJ77_12670"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012327836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HMC46168.1"
                     /translation="MSELTAELPAFTNKTLRAAIIDLDGTMIDTADDFVAGLNGMLTR
                     IGTKATDRDEVIGYIGKGSENLIRSVLAVRFSALEATTKFEDALAIYQTEYARINGQR
                     ATLYPDVTEGLKALRDLGLPLACVTNKPHRFAVELLAKFGLAEYFKVVLGGDSVPQKK
                     PDPAPMLIACERLDVLPREAVAIGDSENDALAGRAAGMATLTVPYGYNHGKPVHLVKS
                     DGIVSSLLAAAQAIAATMAAPVAPGATTSTD"
     gene            complement(5117..5812)
                     /gene="rpe"
                     /locus_tag="VKJ77_12675"
     CDS             complement(5117..5812)
                     /gene="rpe"
                     /locus_tag="VKJ77_12675"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HMC46169.1"
                     /translation="MTQFRLSPSILSADFAILGEEVRNVVAAGADWIHFDVMDNHYVP
                     NLTIGPMVCEALRPHTDVPIDVHLMVRPVDRIVPDFAKAGANVISFHPEGSDHIDRTL
                     SLIRDHGCKAGLVFNPATSLNHLDHVMDKVDLVLIMSVNPGFGGQSFIPEALNKLREA
                     RRRIDEYCERTGREIHLEVDGGVKIDNIREIAEAGADTFVAGSAIFGHHNYHDVIAQM
                     RAELAKVNTGEAR"
     gene            6084..6458
                     /gene="apaG"
                     /locus_tag="VKJ77_12680"
     CDS             6084..6458
                     /gene="apaG"
                     /locus_tag="VKJ77_12680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004186878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HMC46170.1"
                     /translation="MSQYEFSVSVQTQYLPEQSDPDARQFAFAYTLTIRNTGQVAAQL
                     ISRHWVITDSDDVVQEVKGLGVVGNQPLLPPGEKFEYTSWAVIATPVGTMRGSYFCVA
                     EDGERFDAPIAEFSLHMPRTLH"
     gene            6592..>6742
                     /locus_tag="VKJ77_12685"
     CDS             6592..>6742
                     /locus_tag="VKJ77_12685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase"
                     /protein_id="HMC46171.1"
                     /translation="MSIGYSSNRSDMAVLIKNEHCMRFTRSLAGLAGWAASITAAVLL
                     ASCGGG"
BASE COUNT         1303 a         2081 c         1938 g         1420 t
ORIGIN      
        1 tcaatactca aaataaactc cgtgcaacag cgtcagaaga acattcgcgc cagttcggta
       61 ccggggtcgt cggcgcgcat gaacgcctcg ccgaccagga acgtctgcac gtccatggca
      121 cgcagacggt ccacatccac acggctcaga atgcccgatt cggtcaccac tatacggtct
      181 tcgggaacca tgtccagcat gccgatcgtc gtttcaatcg atgtctcgaa cgtgcgaagg
      241 ttgcggttgt taactccgat caacggcgtc ttcagggtga gcgattgctc gagttcgtcg
      301 cgatcgtgaa cctctacgag caccgccagc ccgagcgagt gcgcgtacgc ttccagatca
      361 cgcatttgca agggctggag cgcggcggcg atcaacagaa tgcagtcggc gcccatcgcg
      421 cgggcttcga ggacttgata tggatcgacg ataaagtcct tgcgcaggac cggcaggctg
      481 cacgcggcgc gcgcttcctc gagatacgca atgctgccct tgaagaactg cacgtcggtc
      541 aacactgaca aacacgcggc gccgcctcgt tcatacgact tcgcgatatc ggcgggaaca
      601 aagttctcgc gtattacgcc cttcgacggg ctcgctttct tcacttccgc aatgatcgcc
      661 ggcttccctt cagcgtgctt cgcgcgcaat gcgccgacga agtcgcgcga gtcgcgcgtg
      721 ctcgcctgca aacgcagttc ctcaagcgac acgctttcct gcgcgatgcg aacttcgcca
      781 cgtttgactt cgatgatgcg atcgagaatg tcactcatgt cctggcctcg ttatttggcg
      841 aattgctgcg tgaagcgcac gagttcatcg actttttcac gcgcttgtcc gctcgcgatc
      901 acctctttcg cgagggccat gccggcttcg atcgattcga ccacgttcgc ggcataaagc
      961 gcagtgcctg cgttcagcgt cacgatttcg cgcgcgacgc acggcttgtt attcagcgcg
     1021 ccgagcagca tggtcttcga ttcctgcgcg tcggcgacct tcagcgtccg gttcgacacc
     1081 atctgcaggc cgaaatcctc cggatgaatc tcatactcga gcacttcacc gttgcgcagc
     1141 tcgcccacga ccgtcgccgc gcccagcgat acttcgtcca tgccgtcctt gccgtacacc
     1201 accagcacgt gcttggctcc caggcgctgc atcacgcgca cctggatgcc gacgagatcc
     1261 tcatggaaca caccaatcaa ctgattgggt gcgccggccg ggttggtcag cggaccgagg
     1321 atgttgaaaa tcgtccgcac gccgagttcg cgacgcaccg gcgcaatgtt tttcatggcc
     1381 ggatgatggt tcggcgcgaa catgaagccc atgcccgttt cggcaatgga taaagccact
     1441 tgttccggct tcaggtcgat attcacgccc agcgcttcaa gcacgtctgc gctgcccgat
     1501 ttactcgata ccccgcggtt gccgtgcttc gcgaccttcg cgccggcggc cgccgtgacg
     1561 aacatggtgg ccgtcgagat attgaaggta tgcgatccgt cgccacccgt gcccacgata
     1621 tcgacgagat tgtcgctatc cggcacgctg acgtgattcg cgaactcgcg catcacggtc
     1681 gccgctgccg caatttcccc gatggtttct ttcttcacgc gcaaacccgt gatgatcgcg
     1741 gcggacatca ccggcgacat ctcgccgcgc atgatcatgc gcatcaggtg cagcatttcg
     1801 tcgtggaaaa tctcgcggtg ctcgattgtc cgttgcaacg cttcctgggc tgtaatagtc
     1861 atgatcggat ctcggttcac gcgcgaatgc cttgcgccgg gctcttgacg aagttttcga
     1921 gcagcgcgtg gccatgctcg gacagaatcg attcggggtg gaattgcaca ccctcgaccg
     1981 cgagttcctt gtgacgcacg cccatgattt caccgtcagg cgtccacgcc gatatttcca
     2041 ggcaatccgg cagcgactcg cgttcaattg cgagcgagtg ataacgcgtc acgctgaaat
     2101 gtttcggcag gtcggaaaac acgccgcggc aatccgtttc gatggtgctg actttgccat
     2161 gcatgattgt ttgtgcgcgt accacgcgtc cgccgaacgc ctcgccaata gcctgatggc
     2221 ccaggcaaac gccgagaatg gggatctttc cggaaaactc gcgcagcacg tcgagcgtga
     2281 tgcccgcgtg ttgcggattg ctcggccccg gcgacaggca aatgcgctcg ggattgagct
     2341 tcgcgatttc atcgagggta atttcgtcgt tgcggaaagt ccgcacgtcc tcgcccagtt
     2401 cgccgaaata ctgcaccagg ttataggtga acgaatcgta gttgtcgatc atcagcagca
     2461 tggtctttct ccggatcaga agtcgctatc gaggccgtct tgcacctgct cggcggcgcg
     2521 cagcactgct cgcgccttgt tctccgtctc ctgccattcg gactcgggca ccgaatccgc
     2581 gacgacaccc gccgccgcct gcacgtacaa attgcccttg tggatgagac ccgtgcggat
     2641 cgcgatggcg agatccatct cgcccgtgaa cgacagataa ccgcaagcgc cgccgtacag
     2701 tccgcgtttc accggctcca gctcgtcgat gatttccatc gcccgcactt tcggcgcgcc
     2761 cgacagcgtg cctgcgggga aggtggcgcg cagcacgtcg aaattcgtgg tgccgggctt
     2821 cagcttgcct tccaccgaac tcacgatgtg ctgaacgtgc gagtactttt cgatcgcgag
     2881 cttgtccgtc accaccaccg atcctgtctg cgcgatccgg ccgacgtcgt tacgcgccag
     2941 atcgatcagc atcacgtgct cggccacttc cttcgggtca ttcagcaatt cggtcgcgag
     3001 ctcggcgtcg cgttcgggcg tgttgccgcg cggccgcgta ccggcgagcg ggcgaatggt
     3061 cacgatccgc tcttcgccac gtttttcctg ccgcacgaga atttccggcg atgcgcccac
     3121 cacatgaaac tcaccgccga agttgtagta atacatatac ggcgatggat tcagcgagcg
     3181 aagcgcgcga tacagcgaga gcgggttatc gcggaacggc ttcacgagcc tctggccaac
     3241 ctgaacctgc atcaattcgc ccgccgcgat gtattccttc gccttgcgca ccgcgttcag
     3301 gtaatcgtcc ttcgcaaact ctcgatacgt ctcggtgcgc acgctcgccg acgtcaccgg
     3361 cggctgcacg gtcgtgcgca aacgcgaccg caattcgcgc aggcgctgtt tggctttggt
     3421 gaaggcttcg ggcgtggtgg ggtcggcgta gacaatcaga taaagcttgc cggcgaggtt
     3481 atcgataacc gccatttcct cggtcagcaa caattggata tcgggcaggc cgagatcgtc
     3541 tcgcggagcc gaatgggcca gcttcttttc gatataacgc acggcgtcat aaccgaaata
     3601 cccggccaga ccgccgcaaa agcgcggtag tcccggccgt tgcgcaatct tgaagcgctt
     3661 ttgaaattct tcaataaacg tcagcggatc ggcctggctc gtttcaatga cgttgccgtc
     3721 cttcaccact tccgacacgc cgttctgcac gcgaagcatg gtgcgagccg gcaagccgat
     3781 aaacgagtaa cgtccgaagc gctcgccacc caccaccgat tccagcaaga acgagttggc
     3841 gccattgcgc tcggtttgag ccagcttgag ataaagcgaa agcggcgttt cgaggtcggc
     3901 cagcgcctcg gcgattagcg gaatgcggtt gaaaccttca ttcgccagcg attggaattc
     3961 gagttcggtc atgttctgat cctttacgtg tcgcttgttg gatttggcga catcgagcac
     4021 acactgggcg ctgcggacaa tttaccgcac ggcgcgaatc tcgctttcgt ttgtgcgtca
     4081 cctgatgctt caaacgctgt cccgatcgtc caggcagtgg ccatttgcta aaacggcacg
     4141 gcccgaaaac gaattttggg cgcaacgaat gatgcggatc aggccaggca tcaaggtaaa
     4201 acaagtcggc gggatcggcg cgcggtatgc gcagcgaaac aaaaaacggt tgccgaagac
     4261 gagcttcagc gaccctcggg cgaggttagc gcgaccagcg acgccagggc caggctcccc
     4321 ggtcgatgct gctcagactc cgttttttgt tcagaaacat gaggattgaa ctagtcagtc
     4381 gatgttgtcg cgccgggtgc tacgggcgcg gccatggttg ctgctattgc ctgtgcggcg
     4441 gctagcaggg aagaaactat accatcggat ttcaccaggt gcacgggttt gccgtggttg
     4501 taaccgtaag gcaccgtaag cgttgccatg cccgccgcac gacccgccag cgcatcattc
     4561 tccgaatccc caatggccac agcttcgcgc ggcagcacgt ccagccgctc gcaggcaatc
     4621 agcataggcg ccggatccgg ctttttttgc gggacggagt ccccgccgag tacgaccttg
     4681 aagtattcgg ccaaaccgaa tttcgccagc aattcgacag cgaacctgtg cggtttgttc
     4741 gtcacgcacg ccaacggcaa cccgagatcc cgcagcgctt tcaggccttc cgtgacgtcg
     4801 gggtagaggg tggcgcgctg tccattgatg cgggcgtatt ccgtctgata gatcgctagc
     4861 gcgtcctcga acttcgtggt tgcttccagt gctgaaaacc gcacggccag cacgcttcgg
     4921 atcaggttct ccgaaccctt gccgatatag ccaatgactt cgtcccgatc cgtggctttc
     4981 gtgccaatcc gcgtcagcat gccgttgagc ccggcgacga aatcgtcggc ggtgtcgatc
     5041 attgtcccgt cgaggtcaat gatcgccgcg cgcagcgtct tgttcgtgaa cgctggaagc
     5101 tccgccgtga gttcgctcat cgcgcttctc ccgtattcac tttggccagc tccgcgcgca
     5161 tttgcgcgat cacgtcgtgg taattgtggt ggccgaaaat ggccgacccg gccacgaacg
     5221 tatccgcgcc ggcttccgcg atttcccgga tgttgtcgat tttgacgccg ccgtccactt
     5281 cgagatgaat ctcgcgcccg gttcgctcgc agtattcgtc gatacgccga cgcgcctcgc
     5341 gcagcttgtt gagcgcttcc ggaatgaacg actggccgcc aaagcccgga ttcaccgaca
     5401 tgatcagcac caggtcgacc ttgtccatca cgtggtcgag atgattcagc gacgtggccg
     5461 ggttgaagac aaggcccgcc ttgcagccgt gatcgcggat cagcgacagc gtgcggtcga
     5521 tatgatccga accttccggg tgaaagctga tcacattagc gccggctttc gcgaaatccg
     5581 gcacgatacg atcgactggc cgcaccatca gatgcacgtc gataggaaca tccgtatgcg
     5641 gacgcagcgc ctcgcagacc atggggccga ttgtcaggtt cggaacgtaa tggttgtcca
     5701 tcacgtcgaa gtggatccag tccgctccag cggcgactac attacggacc tcttcgccga
     5761 gaatggcgaa gtcggcggac aaaatactgg gggacaggcg aaattgcgtc atgacgtcgg
     5821 ccggttgcga gcggaaaatg cattttacag cgtgacgaca cttttgaccg ctgaccgaat
     5881 ggcctacgtc ccgtccagca gccttcagcg ggcggttcgc gcattcgaca acggcctcgc
     5941 acccattggt gttctgttgc gggcacgggc tgcatcaagc agaatgcgtc acctgacgtt
     6001 cacgcaaatt cgcgcgaccc gcgccgggcc tctgtcctcc gagggttcga acccgcgcag
     6061 cacatttttg aattggaaaa gcgatgagcc agtatgaatt cagcgtttcc gtccagacgc
     6121 aatatctccc tgaacaatcg gatccggacg cccgccagtt cgcgttcgcc tataccctga
     6181 ccatccggaa tactgggcag gtcgcggcac aactgatctc gcgccactgg gtcatcaccg
     6241 acagcgacga cgtggttcag gaagtaaagg gacttggcgt ggtggggaac cagccattgc
     6301 tgccgccggg cgagaaattc gagtacacga gctgggccgt cattgcgacg cccgttggca
     6361 ccatgcgtgg ttcgtatttt tgtgtagccg aagacggcga gcgtttcgac gcgccaattg
     6421 ccgagttttc gttgcacatg ccgcgtacgc tgcattgaac tggcagcgct gaagcactcg
     6481 ctgtcatggc gcttgcgttt ctcctagcgc ctgtttttct tcttgcccga agccgtccac
     6541 acgacgataa agatcagcag aagcagcgcc aagagagact cgagcgcaaa aataagcatt
     6601 gggtattcgt cgaatagatc agacatggcg gttctcatca agaacgaaca ttgtatgcgt
     6661 ttcactcgct cgctcgccgg attggcgggt tgggcggcgt cgatcacagc agccgtcctg
     6721 ctcgcttcgt gcggtggcgg cg
//
LOCUS       DATGBK010000906         1676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_57306, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000906 DATGBK010000000
VERSION     DATGBK010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57306"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..1293)
                     /locus_tag="VKJ77_12690"
     CDS             complement(166..1293)
                     /locus_tag="VKJ77_12690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HMC46172.1"
                     /translation="MKIKAAVLQAMGATPPYAVSRPLHIEEIDLAPPGADEVLIKIAA
                     AGLCHSDLSVINGDRPRPMPMALGHEAAGVVEELGAGVTDLQVGDHVVVVFVPSCGHC
                     APCAEGRPALCEPGAAANGAGTLLSGARRLTGGGEALNHHLGCSVFAEYATVSRRSVV
                     KIDPKVPLDEAALFGCAVLTGVGAVVNTAQVRVGASVAVVGLGGVGLAALIGAQAAGA
                     RQIVAIDLSDAKLEQARALGATHTVNAGRADAIEHVRALSSGGVEFAFEFAGSINALD
                     LAYRITRRGGSTVTAGLPPSTALWPLPAVSLVAEERTLKGSYIGTCVPSRDIPRYIDL
                     YLQGRLPVNKLLTGRLKLDEINHGFDLLHEGKAIRQVVVFE"
     gene            complement(1290..>1676)
                     /locus_tag="VKJ77_12695"
     CDS             complement(1290..>1676)
                     /locus_tag="VKJ77_12695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HMC46173.1"
                     /translation="YPARRVMAVCGDGGFMMNSQELETAVRLKLNLVVLIIQDDAYGM
                     IRWKQAVDNFPDWGLTFGNPDFVKYADAYGAKGRRVESADALAPTLEAAFREGGVQLV
                     IVPVDYSENTRVLVEELKNRVMEVAQ"
BASE COUNT          336 a          534 c          493 g          313 t
ORIGIN      
        1 ggtagattct gcggtcgccg caaacgttca acaagcattt ttttgcagta ttaccctatg
       61 ttgctaaagg atcacggcaa aaattacgct ttctttaatc aaagattttg accgtcagtg
      121 gatccgttac gggcgttcaa actttctgca gatctgcgaa ctgcctcatt cgaataccac
      181 cacttggcga atcgccttgc cttcgtgtag caggtcaaaa ccatgattga tttcatcgag
      241 cttaaggcgg cctgtgagca gcttgttcac cggcagacgc ccctgcaaat acaaatcgat
      301 gtagcgcggg atgtcgcgcg aaggcacgca tgtgccgata tagctgccct tgagggtgcg
      361 ttcttctgct acaagactga ccgctggaag cggccaaagc gcggttgacg gcggcaaccc
      421 ggctgtaacg gtcgaaccgc ctcggcgcgt aatgcggtaa gccaggtcca gcgcgttgat
      481 cgatcccgcg aactcaaagg cgaattcgac accgccggaa ctgagcgcgc gaacatgctc
      541 gatcgcatcg gcccgaccgg cgttgaccgt gtgcgtggcg ccgagggcgc gcgcctgctc
      601 gagcttggca tcggacaaat cgattgccac gatctgccgg gcgccagccg cctgcgcgcc
      661 aatgagcgcc gccaggccaa caccaccgag accgaccacc gcaacggatg cgccgaccct
      721 gacctgcgcc gtgttgacca ccgcaccgac acccgtcagc acggcgcacc cgaatagcgc
      781 ggcttcgtcg agcggaacct tggggtctat cttgacgaca gagcggcgcg acacggtcgc
      841 atactcggca aacaccgaac atcccagatg atggttcaag gcttctccgc cgcccgtaag
      901 acgacgtgca ccggacagca acgtgccagc accgtttgcc gcggcgcctg gctcgcacaa
      961 ggccgggcgg ccttcggcac agggcgcaca gtggccacag ctcggcacga acaccacgac
     1021 gacgtggtcg ccgacctgga ggtcagtcac acctgccccc agttcctcga caacaccagc
     1081 ggcttcatgg ccgagcgcca ttggcatcgg acgtggccgg tcgccgttga tcacggacag
     1141 gtcggagtga cacaggcccg cggcggcgat cttgatcagc acttcatcgg cgcctggcgg
     1201 tgccaggtcg atctcttcga tatgcaaagg gcgggagacg gcgtagggcg gtgttgcgcc
     1261 catcgcctgc aggactgctg ccttgatctt cattgtgcga cctccataac gcggtttttg
     1321 agttcctcga cgagtacacg ggtgttctcc gagtagtcga ccggaacaat gaccaactgc
     1381 acgccgcctt cgcggaacgc cgcttccagt gtcggcgcta gcgcgtcggc cgactcgacg
     1441 cgccgtcctt tagcgccata ggcatccgcg tacttgacga aatcggggtt gccgaacgtg
     1501 agaccccagt ccgggaagtt gtcgacggcc tgtttccatc ggatcattcc gtaggcatcg
     1561 tcctggatga tcaatacgac caggttgagc ttcagccgga cggcggtctc gagttcctgc
     1621 gagttcatca tgaagccacc atcgccgcat accgccatca cgcgccgggc agggta
//
LOCUS       DATGBK010000907         3499 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_172936, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000907 DATGBK010000000
VERSION     DATGBK010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172936"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..569)
                     /locus_tag="VKJ77_12700"
     CDS             complement(<1..569)
                     /locus_tag="VKJ77_12700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HMC46174.1"
                     /translation="MRLILSALLVLTLAACASQGPTATNSLSSLPSAQNQQTVADTIR
                     KTAAAKETINVDKTSLDSLSGPDSDLWGRIRRGFQIPDLQSDLVDMQVNWYAQRPDYV
                     ERMTGRSQKYLYHIVEELEQRHMPTELALLPFIESAYNPQALSVAKAAGMWQFVPGTG
                     RDYNLKQNMFQDERRDVLASTSAALDYLSR"
     gene            complement(727..1542)
                     /gene="gloB"
                     /locus_tag="VKJ77_12705"
     CDS             complement(727..1542)
                     /gene="gloB"
                     /locus_tag="VKJ77_12705"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HMC46175.1"
                     /translation="MKTLEYVPVPAFEDNYIWLVSDGHNAVVVDPGDAAPVEAYLTKR
                     GWRLTAILLTHHHHDHVGGVAKLLVSQSAGNSADGEIPVIGPAGEAIEHLTRRVKQGD
                     HVRIASPALECSVIDVPGHTAGHIAYFQPSDPEGTPHLFCGDTLFASGCGRLFEGTPQ
                     QMLNSLDALAALPDATLVHCAHEYTLSNIRFARAAEPDNAALAQWQKEAEGLRERNQP
                     TIPTTLLHERNANPFLRVGEKSVQATLAAKFERPVSDRLDAFTLLRGWKDKFR"
     gene            1561..2406
                     /locus_tag="VKJ77_12710"
     CDS             1561..2406
                     /locus_tag="VKJ77_12710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HMC46176.1"
                     /translation="MSERTIIDWPAWTLSAPGRYVLEWEQAQLDRVVSDIFGYHALQL
                     GLPGLDALRENRMPYRGLVLDTASAASAPFTLPPPVNPDARPGVTSLPSASRGLHAPE
                     GRSAVWCDLLDLPFEAQSVDLLVMPHTLEFTSDPHRLLREAERVLVPEGQLIILGFNS
                     LSLWGARQSLGKVAGKPFVPSAHEMIAFTRIKDWIKLLGFDLERGRFGCYRPPLLTEQ
                     WLARYQFMEAAGDRWWPIFGAAYMITAIKRVRGMRLIGPRKLKKPALAPGLAPVATPH
                     TRNEH"
     gene            2406..2864
                     /gene="rnhA"
                     /locus_tag="VKJ77_12715"
     CDS             2406..2864
                     /gene="rnhA"
                     /locus_tag="VKJ77_12715"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HMC46177.1"
                     /translation="MTLDTTDKVIDIYTDGACKGNPGPGGWGALLRFGDQEKELFGGE
                     TPTTNNRMELMGVISALEALKRPCRVVIHTDSQYVQKGISEWIHGWKKKNWMTAAKTP
                     VKNADLWKRLDALVVQHQIEWRWVKGHSGHPENERADALANRGVTSLAEG"
     gene            2876..>3499
                     /gene="dnaQ"
                     /locus_tag="VKJ77_12720"
     CDS             2876..>3499
                     /gene="dnaQ"
                     /locus_tag="VKJ77_12720"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HMC46178.1"
                     /translation="MRQLVLDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYVN
                     PGRDSDPGALAVHGLTTEFLSDKPKFADIAAELRDFVAGAELIIHNAPFDVGFMDVEF
                     GLVGMSGVKEVCGGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSEL
                     LAEVYLAMTRGQESLVIDMLGEMPAMGAGHTPRIALDDLQLPVLVASE"
BASE COUNT          692 a         1040 c         1084 g          683 t
ORIGIN      
        1 cgcgaaagat agtcgagcgc cgcgctggtc gacgccagca cgtcgcgccg ctcatcctga
       61 aacatgttct gcttcaggtt gtagtcgcgg ccggtgcccg gcacgaactg ccacatgccc
      121 gcggccttcg cgacagataa cgcctgcggg ttataggccg attcaataaa cggcagcaac
      181 gcgagttcgg tcggcatgtg ccgctgctcg agttcctcga cgatgtgata caggtatttt
      241 tgcgagcggc cggtcatgcg ctcgacgtag tccggtcgtt gcgcgtacca gttgacctgc
      301 atgtcgacca ggtcgctttg cagatcggga atctggaaac cacggcggat acggccccac
      361 aaatcgctgt cgggtccgct aagtgaatcg agcgacgtct tgtcgacgtt gatcgtttcc
      421 ttggcggcgg cagtcttccg gatggtgtct gctacggttt gctgattttg cgctgaaggg
      481 agggaagaaa gggaattggt cgctgtcggg ccctggctgg cacatgcagc caaagtcagg
      541 acgaggagcg cacttaaaat caatcgcatg aacgtctcgg attccaaaaa atgtgcttgg
      601 aaatttggac ccgatagtac ggaaccgcac tcatcacgtc aatataaatg caaaaaacac
      661 agcaaaatcc ggggcctgca atggttttca acgtttcaga tgaagataac cgcaggccgg
      721 cacgggttag cgaaatttat ccttccagcc gcgcaacagt gtgaaggcgt cgagccggtc
      781 gctcaccggg cgctcgaact tcgcggcaag cgtggcctgc acgctttttt cgccgacacg
      841 gaggaacggg tttgcgtttc gttcgtgcag gagcgtggtc ggaatggtcg gctggttgcg
      901 ctcgcgcaag ccctccgctt ccttctgcca ttgcgccagc gccgcgttgt ccggctcggc
      961 tgcgcgcgcg aaacggatat tcgacagcgt atattcgtgg gcgcagtgaa ccagcgtggc
     1021 gtcagggagc gcggcgagcg catcgagtga attgagcatt tgttgcggcg tgccttcgaa
     1081 cagacggccg caaccgctcg cgaacaaggt gtcgccgcag aagaggtgcg gcgtgccttc
     1141 cgggtcgctc ggctggaagt aagctatgtg tccagcggta tgtccgggca cgtcgataac
     1201 cgagcattcc agcgccggac tcgcgattct gacgtgatcg ccctgcttca cgcgccgcgt
     1261 cagatgctcg atagcctcgc cagccgggcc gatcaccgga atttccccgt cggctgaatt
     1321 tccggctgat tggctaacaa gcagttttgc gacgccgccg acgtggtcgt gatggtggtg
     1381 cgtgagtaaa atagcggtta gccgccaacc gcgtttcgtc aaataggctt cgacgggcgc
     1441 ggcgtcgcca ggatcgacca cgacggcatt gtgaccgtcc gacaccagcc agatgtagtt
     1501 gtcttcgaac gccggaaccg gcacgtactc aagcgttttc ataaggcgac tcacccgaac
     1561 atgtcagagc gaacaattat agactggccc gcctggacac tttccgcgcc cggccgctat
     1621 gtgctcgagt gggagcaggc acagctcgac cgcgtggtgt cggatatttt cggctaccac
     1681 gcgctgcaac tcggcttgcc cgggctcgac gcgttacgcg agaatcgcat gccgtaccga
     1741 ggcctcgtgc tagataccgc cagcgccgcc agcgcgcctt tcacgctgcc cccgccggtc
     1801 aaccccgacg cgcggccggg cgtgacatcg ctgccgtcgg cgagccgcgg actgcacgca
     1861 cctgaaggac gcagcgccgt gtggtgtgac ctgctcgact taccgttcga agcgcagagt
     1921 gtcgatctgc tggtcatgcc gcatacgctg gaattcacga gcgacccgca tcggttgctt
     1981 agagaagccg aacgcgtgct ggtgcctgaa ggacagttga tcatcctggg ctttaactcc
     2041 ctgagcctgt ggggtgcgcg gcaatcgctc ggcaaggttg ccggcaaacc gtttgtcccg
     2101 tccgcacacg agatgatcgc gttcacgcgg atcaaggact ggatcaagct gctcggattc
     2161 gaccttgaac gcgggcgctt cggctgctat cgtccgcctc tcctgaccga acagtggctg
     2221 gcgcgctatc agttcatgga agccgcgggc gaccgctggt ggcccatttt cggcgccgcc
     2281 tacatgatca cggccatcaa gcgcgtgcgc ggcatgcgcc tgatcgggcc gcgcaagctg
     2341 aaaaaacccg ccctcgcacc gggccttgcc ccggtcgcca cgccgcatac acgcaacgag
     2401 cattgatgac cttagacacc acagacaaag taatcgacat ttataccgac ggcgcctgca
     2461 aaggcaatcc cggccccggc ggctggggtg cactcctgcg cttcggcgat caggaaaagg
     2521 agttgttcgg cggcgaaaca ccgacgacca acaaccgcat ggaactcatg ggcgtgattt
     2581 cggcgctcga ggcgctcaag cggccgtgtc gcgtggtcat tcatacggac tcgcaatatg
     2641 tccagaaggg catcagcgaa tggatccacg gctggaaaaa gaagaactgg atgacggcgg
     2701 cgaaaacgcc cgtcaagaac gcggatctct ggaagcggct tgatgcgctg gtggtccagc
     2761 atcagattga atggcgctgg gtgaaaggcc attcgggcca cccggaaaac gaacgcgccg
     2821 acgcgctcgc gaatcgcggc gtcacttcac tcgccgaagg ttaattctta tctctatgcg
     2881 ccaactcgta ctcgataccg aaaccaccgg cctcaacgcc cgcacgggcg accgtattat
     2941 tgaaatcggc tgcgtcgagc ttgtgaatcg acggctcacc ggcaacaacc tgcacttcta
     3001 tgtaaatccg ggacgcgaca gcgatccggg cgcgctcgcg gtgcacggcc tgaccacgga
     3061 atttctcagc gacaaaccca agttcgccga tatcgccgcc gagttgcgcg acttcgtcgc
     3121 cggcgcggag ctgatcatcc acaacgcgcc gttcgacgtc ggtttcatgg acgtggagtt
     3181 cggtctggtt ggcatgtctg gcgtgaagga agtctgcggc ggcgtgatcg atacgctggt
     3241 gcaggcgaag cagatgttcc ccggcaagcg caattcgctt gatgccttgt gtgaccggtt
     3301 tggtattagc aacgcacacc ggacgttgca tggcgccctg ctcgactcgg aattgctggc
     3361 ggaagtttat ctggcaatga cgcgcggcca ggaaagcttg gtaatcgaca tgctcggcga
     3421 gatgccggca atgggcgcag gtcacacgcc acgtattgcg ctcgatgatt tgcagttgcc
     3481 ggtgctggtg gcatcggag
//
LOCUS       DATGBK010000908         2549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_196348, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000908 DATGBK010000000
VERSION     DATGBK010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196348"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            537..2297
                     /locus_tag="VKJ77_12725"
     CDS             537..2297
                     /locus_tag="VKJ77_12725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HMC46179.1"
                     /translation="MNTHEAIRIGNIELDVERYELRRAGQRIRLERLPMELLIFMASR
                     GGELVTRADIVRVLWSGNAFRDTDNSINTAIRKIRIALGENPDHPKYLLTIKGKGYRL
                     DGARTLTTQPLAAVPAAVRVLVLPFENKSGDPTQDKLCDALADETSANIGMLHPEQIY
                     VIARTTAAGYRGSNKSIAQMAHELTVDHVLEGSLTREGGRVRILAQLIRGTDQAQIWS
                     CAYEPAAHGALDIQKQVGTALAREVSPTLAEQQQHMLSRRSPVDPAAHDAYLRGRYYW
                     TRRVHFHAGFAAHHALSGEDFTRALGYFESAIERDPTYALGYVGLSNIYGSTVTHGLF
                     APSHGYPKARETALRALELDPDLPEAHQALAGVHYFYDWDWRRAEAEFLEALRLNPDH
                     AETSRLYARLLLVLGRESEGHAQFDRAERFDPLGFEGSRIFGLVQSGRYEEVIREFLA
                     EGHGNRSSLIYQVLSIAFEAQGSYKEAVEATIDALTRCNEFARAEAIRTEWEAGGYDA
                     VLQWYLQDLLVRRQKGYTSPMLFAEIYARLGKQDEMFHWLDVALAERSSRLCELRTNA
                     WFDRYRSTGRFRNVEKRIGY"
BASE COUNT          512 a          720 c          815 g          502 t
ORIGIN      
        1 tcagtgcaac atcaacgcga aggtcagccg cgtgcagggg agaatgccca cgcttttcgc
       61 gccgataagc gtcggggtgc ttagcttatt gcgcggggtt gcgtggcacg atgcgacctc
      121 agatcagcgc atgagtttca tgttccaccc tgcatattcc actccatgca ccaaccctga
      181 gcgtcggcca atattcttac gagaatggcg gatatgacac gtgttcgcgt tctaggatag
      241 tagagcgtta gcgctcacac gcgaaagacg atgtcgcgca accagttcct gcgcggctgt
      301 gcgtgcccga agattcgagg agggctatgc tcgacaattc gctcccgatc cgaaacgaga
      361 tgatggctgc ccgccagcgc tggccgatct tgctcgtcag catggggaag cgcgatcgag
      421 acctttgact ttgtcggcta cggatttttc gcgcacgaga taggccgtga aacaagcagg
      481 cggaggcgtt ggcgcttgat caagcgcaca tagagataga tctcgctgga gggcacatga
      541 atacgcacga agccatcagg atcgggaaca tcgagctcga tgtggagcgc tacgaattgc
      601 gccgtgcggg gcagcgcatt cgactggaac gcttgccgat ggaactcctg attttcatgg
      661 catcgcgcgg gggcgaactg gtgacgcgcg ctgacattgt cagggtcctg tggagcggca
      721 acgcgtttcg ggacaccgac aacagtatta atacagcgat ccggaaaatc cgcatcgcgc
      781 ttggcgagaa tcccgaccac ccgaagtatc tgcttactat caagggcaag gggtatcgcc
      841 tcgacggcgc gcggacgttg acgacgcaac cgctggccgc ggtgccggcc gctgtgcgcg
      901 tgcttgtcct gcccttcgaa aacaagagcg gggacccgac ccaggacaag ttgtgtgatg
      961 cgctcgcaga cgagacctcg gccaatatcg gcatgctgca tcccgagcag atctacgtca
     1021 ttgccaggac aaccgccgcg ggttaccggg gatccaacaa gagcattgcg cagatggcgc
     1081 acgagctgac tgtcgaccat gtgctcgaag gttcgctcac gcgggaaggc gggcgcgttc
     1141 gcatcctggc acagttgatt cgcggtaccg atcaggcgca aatctggagc tgcgcttatg
     1201 agccggcagc acacggtgcg ctggatatac agaagcaggt cggcaccgcg ctggccaggg
     1261 aggtgtcgcc gacgctcgcg gaacagcagc agcacatgct gtcgcgacgc tcgccggtcg
     1321 acccggcagc gcacgacgcg tacttgcgcg gccggtatta ctggacgcgc cgggttcatt
     1381 tccatgcagg attcgccgct catcacgcgc tgagcgggga ggacttcacg cgtgcgctcg
     1441 gctacttcga gtccgccatc gaacgcgatc cgacctacgc gctggggtat gtcggtttgt
     1501 cgaatatcta tggatcgact gtgacacatg gcctctttgc accgtcgcat ggttatccga
     1561 aggcacggga aaccgcgctg cgcgccctgg aactggaccc ggatcttcca gaagcccatc
     1621 aggcactagc cggcgtgcac tatttctatg actgggactg gcgccgtgca gaggcagaat
     1681 ttctcgaagc gttgcgcctg aatcctgacc acgccgaaac cagccgcctc tacgcgcggc
     1741 tgttgctggt gcttgggcga gagtcggaag gacatgcaca gttcgaccgt gccgagcgct
     1801 tcgacccgct aggattcgaa ggctcgagga tattcggact ggtgcagtcg ggccgatatg
     1861 aggaggtcat cagggagttc ctcgccgagg ggcatggcaa tcggtcatcg ctgatctatc
     1921 aggtgctgtc gattgcgttc gaagcgcagg gctcgtacaa ggaagcggtc gaagcaacca
     1981 tcgatgcgct gacgcgttgc aacgagttcg cccgggccga ggcgatccgg accgagtggg
     2041 aagcgggtgg atacgacgca gtcctgcagt ggtacttgca ggacttgctg gtgaggcgtc
     2101 agaagggcta tacgtcgccg atgctgtttg cggagatcta cgcccggctg ggaaagcagg
     2161 acgagatgtt tcactggctt gacgtagcgc tggccgaacg atcgtctcgc ctgtgcgagc
     2221 tgcgcacaaa cgcatggttc gaccgctata ggtcgacagg gcgttttcga aacgtggaaa
     2281 agaggattgg ctattgatga gcggcgccgc gaggcttggt gaacgatgga acctgtcacg
     2341 gatacacggc gcgctgagca ctttgcctgt attccgcgtg tcggcttgcc cccgtcacgc
     2401 gaaatacaag ctcatgccgg ggttattgcc cgtgatagag ctcctgcaac cggctttgtt
     2461 ctccggattt ctctgaacgg aggagatcct ggtagacctg ttgccgcgtc aggctcattg
     2521 atgcgcctgc atcgcttctg gacatatcc
//
LOCUS       DATGBK010000909         3010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_334683, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000909 DATGBK010000000
VERSION     DATGBK010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3010
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334683"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1465)
                     /locus_tag="VKJ77_12730"
     CDS             complement(<1..1465)
                     /locus_tag="VKJ77_12730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006759629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC46180.1"
                     /translation="MIRFNQFSLARGTKPLFEQTTFALNPGEKAGLIGANGAGKSTLF
                     SVLRGDLHADGGDFSMPPSWQIAHVAQETPAVERTALDYTLDGDTQLRRIEARIASAS
                     AAHDGAAEADAHAAFADADGYTAPARAETLLIGLGFTLAQTKDPVTSFSGGWRMRLNL
                     AQALMCRSDLLLLDEPTNHLDLDAIIWLEDWLHRYPGTLIVISHDREFLDSVCNVTLH
                     LENRQIKRYGGNYSQFEILRAQQIALQQSAYVKQQKTVEHLQSFINRFKAQATKAKQA
                     QSRVKALERMELIAPAHASSPFTFEFRTPDAAPNPMMVMESVRCGYHTEAGEVPIVEG
                     VTLSIQNGQRIGLLGANGQGKSTLIKTLAGTLEALSGKVREGKGLRIGYFAQHQLETL
                     RPEDSALEHVARLAPDTREQELRDFLGGFNFSGEMATAKIAPFSGGEKARLALALIIW
                     QKPNLLLLDEPTNHLDLETRHALTMALAQFEGTLILVS"
     gene            1664..2143
                     /locus_tag="VKJ77_12735"
     CDS             1664..2143
                     /locus_tag="VKJ77_12735"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009904829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HMC46181.1"
                     /translation="MNPIYSFSAETLGGETVSMENYQGKVLLIVNTASECGFTPQYKG
                     LQELYERYADRGFAVLGFPCNQFGKQEPGDAAQIGSFCEQNYGVTFPMFAKVDVNGAN
                     AHPLFRYLTEEAPGVLGTEGIKWNFTKFLVDKEGNVITRFGSVTKPDALSSDIEKLL"
     gene            2526..>3010
                     /locus_tag="VKJ77_12740"
     CDS             2526..>3010
                     /locus_tag="VKJ77_12740"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC46182.1"
                     /translation="MTKLHEAIVVHLVDAIVSGVYPVGSSLPNEMELAAAHAVSRTAA
                     REAMQKLASLGLIESRRRKGATVLARESWKLLDASVLGVAVMRVEDVSFFQALVEARL
                     LIEPRAAELAAARASERDLDRIEASLNAMAGQADGTRGAGWAAADGAFHARIIEAAGN
                     WV"
BASE COUNT          554 a          846 c          967 g          643 t
ORIGIN      
        1 gcgacaccag gattagtgtg ccttcgaact gcgcgagcgc catggtcagc gcgtgacgcg
       61 tttcgagatc caggtggttc gtcggttcgt cgagcaacag caaattgggc ttttgccaga
      121 tgatcagcgc aagcgcgagc cgggcctttt ctcctccgga aaacggcgcg atcttcgcgg
      181 tcgccatttc gccggaaaaa ttgaagccgc cgaggaaatc gcgtagttct tgttcgcgtg
      241 tgtcgggtgc gaggcgggcg acatgttcca gcgcggagtc ctcgggacgc agggtttcga
      301 gctgatgctg cgcgaaatag ccgatccgca agcccttgcc ctcgcgcacc ttgccgctca
      361 acgcttcaag cgtgccggcc agcgtcttga taagcgtcga tttcccctgt ccgttcgcac
      421 ccagcaagcc gattcgctga ccgttctgaa tggacagcgt gacgccttcc acgatgggta
      481 cttcaccggc ttcagtgtga taaccgcagc gcacggattc catcaccatc atcgggttcg
      541 gcgcggcatc gggcgtgcgg aactcgaacg tgaaaggcga agaagcatgc gccggcgcga
      601 tgagttccat gcgttccagc gccttcacgc ggctttgcgc ctgcttcgct ttggtagcct
      661 gcgccttgaa acggttgatg aagctttgca gatgctccac cgtcttttgc tgcttcacat
      721 acgcgctttg ctgcaacgcg atttgttgcg cgcgcaggat ttcgaactgg ctgtaattgc
      781 cgccgtaacg cttgatctgc cggttctcca gatgcagcgt gacgttgcag acggaatcga
      841 ggaattcgcg atcatgcgag atcacgatca gcgttcccgg atagcgatgc agccagtctt
      901 ccagccagat gatcgcgtcg agatccaggt gattcgtggg ttcgtccagc agcagcagat
      961 ccgaacggca catcagcgcc tgcgcgaggt tcaggcgcat acgccagccg ccggagaagc
     1021 tcgtcacggg gtcctttgtt tgcgcgagcg tgaaccccag gccgatcagc agggtttcgg
     1081 cgcgggcggg cgcggtgtaa ccgtcggcgt cggcgaaagc ggcgtgtgcg tcggcttcag
     1141 cggcgccatc gtgggccgcc gatgccgacg caatccgcgc ttcgatgcgc cgtaattgcg
     1201 tgtcgccgtc aagcgtgtag tcgagcgcgg tgcgctcgac ggccggcgtt tcctgcgcga
     1261 cgtgcgcgat ttgccacgac ggcggcatag agaaatcgcc accgtccgcg tgcagatcgc
     1321 cgcgcagcac ggagaagagc gtggacttgc ccgcgccgtt agcgccgatg aggcccgcct
     1381 tttcgccagg attgagcgcg aacgtggtct gttcgaagag cggtttggtg ccgcgggcga
     1441 ggctgaactg gttgaagcga atcacggcgt ggagacccag gcaagtacgg gaaaacgcta
     1501 ttttagactg gcgcgggtgg tcgccgccgg ctcattgacg ttggtgcgtc tcgttgactc
     1561 cggttgaccc cggatcacgc ccattgacgc gtcgttagcc gtttggtcgg atgtttttaa
     1621 cctgcgtttc gcttagactg gattttttca agcggagcat cgaatgaacc ctatctactc
     1681 gttttcagcg gaaaccctcg gcggtgaaac cgtcagcatg gaaaactatc agggcaaggt
     1741 gctgttgatc gtgaacaccg cgagcgagtg cggattcacg ccgcagtaca agggtttgca
     1801 ggagctgtac gaacgttacg cggatcgcgg gttcgcggtg ctgggctttc cgtgcaacca
     1861 gttcggcaag caggaaccgg gcgatgcggc tcaaattggc agtttttgcg agcaaaacta
     1921 tggggtcacg tttcccatgt ttgcgaaggt cgacgtgaac ggggcgaacg cacatccgct
     1981 gtttcgctat ctgaccgaag aagcgccggg cgtgttgggg acagaaggca tcaagtggaa
     2041 cttcacgaag ttcctggtcg acaaggaagg caacgtgatt acccggttcg gctcggtgac
     2101 gaagccggat gcgctttcca gcgatatcga aaaactgctc tgacgcccga tttgcggcag
     2161 tgacttggac cgaccggggc aaagacgctg gtcgagtgca cggctgcatt gtctagtttc
     2221 taaaaggcgt cgtccggccg ggcgtcgccg atcaatattt cctctgtatg tgtccccggc
     2281 aagcacctgg gctcttctgc acgcctgtac ggctcggaat ggctcgcgtc tgaggatcgc
     2341 gttatagggc tcggcgacat ctccagaggg cctgctgcga tcgtcaacgg ctttcttcca
     2401 tcgctgaaag tgtgaaatta tgtcgtacat atccatcgct ctgcagggaa ttatgtatga
     2461 tttaattttc cgacccacac caatttgccg ctttgatgaa acctgaaaac gcaggctcgc
     2521 caaccatgac gaagttgcat gaggcgattg ttgtccatct ggtcgacgcg attgtctcgg
     2581 gcgtctaccc ggttggatcg tccttgccga acgaaatgga actcgccgcc gcgcatgccg
     2641 tcagccgtac ggcggcgcgt gaggcgatgc agaagctcgc ttcactcggg ctgatcgaga
     2701 gcaggcgacg caagggcgcg accgttctcg cgcgtgaatc gtggaagttg ctggacgcct
     2761 cggtgctggg cgtggcggtc atgcgtgtgg aggacgtgtc gtttttccag gcactggtcg
     2821 aagcacgtct gttgattgaa ccacgtgccg ccgaacttgc tgcggcaagg gcgtccgagc
     2881 gtgatcttga ccgtatcgaa gcctcgctga acgctatggc cggccaggcg gatggcacgc
     2941 gcggcgcggg ctgggcggca gcggatggcg cttttcacgc gcgcattatc gaagcggccg
     3001 ggaattgggt
//
LOCUS       DATGBK010000910         4305 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_103249, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000910 DATGBK010000000
VERSION     DATGBK010000910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4305
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103249"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..537)
                     /locus_tag="VKJ77_12745"
     CDS             complement(<1..537)
                     /locus_tag="VKJ77_12745"
                     /inference="COORDINATES: protein motif:HMM:NF018516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system ImpA family N-terminal
                     domain-containing protein"
                     /protein_id="HMC46183.1"
                     /translation="MEYAAVRASNEPAPTHPCGANLEYDTAFIELQQAASSKREQQFG
                     DAVIAADPPDWRQVERQATRLLERTTDLRVIALLTLAWTEIDGLAGYANGLALAADAL
                     ERHWDEVHPQVESASESDPMARANALASLTDAQTLGASLRNATLLHVQTGAITLGDAA
                     TLLANGTTRTILPAPLEDA"
     gene            1116..1460
                     /locus_tag="VKJ77_12750"
                     /pseudo
     CDS             1116..1460
                     /locus_tag="VKJ77_12750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405348.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            2042..3637
                     /locus_tag="VKJ77_12755"
     CDS             2042..3637
                     /locus_tag="VKJ77_12755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HMC46184.1"
                     /translation="MPDSVATNPSAALSDAAPGADFSTEVQASPATPAVALELGATES
                     AVPGPVPTFDQFGLSADILRAVVDSGYTIPTPIQAQAIPVVLAGRDMMGAAQTGTGKT
                     ASFSLPIIQRLLPMASTSASPARHPVRALILTPTRELADQVAANVQAYSKHTPLRSTV
                     VFGGVDMNPQSEALRRGVEILIATPGRLLDHVQQKTLNLGQVQILVLDEADRMLDMGF
                     LPDLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTNANVRQIV
                     FEVAESDKSGAVTQLIRERGLKQVLVFCNSKIGASRLSRVLEKDGIVATAIHGDRTQG
                     ERMQALEAFKKGEIEALVATDVAARGLDITDLPAVINFDLPFSAEDYVHRIGRTGRAG
                     ATGDALSLCSPNERKQLADIEKLIKRPLEVMVLKVDVPVRRESSSAPRREERSGRPER
                     GEHRHARSEEPRRRSTSFERSHTRQQPIDDFFLKPYEPSAASTRKTQDDAAAEAERKN
                     TPRQPLAALLGGLGMPRRTPSGS"
     gene            complement(3753..>4305)
                     /locus_tag="VKJ77_12760"
     CDS             complement(3753..>4305)
                     /locus_tag="VKJ77_12760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HMC46185.1"
                     /translation="HTRHTHARHATLAYPGTCRNGLHGKPPRAWRMRVPDGDAAVLSF
                     KDRWQGTQTQDLASEVGDFVLKRADGEWAYQLAVVVDDADAGITHIVRGADLLDSTAR
                     QIYLQRCLGVSTPAYLHVPVIVNELGEKLSKQTGATALDTGAPLVELTQAAKHLGLHP
                     SPAGSLEAFFSDVTAQWAKRFAI"
BASE COUNT          839 a         1230 c         1297 g          939 t
ORIGIN      
        1 agcgtcttcg agcggagcgg gcaggatcgt gcgtgtcgtg ccgttcgcaa gcaacgtagc
       61 ggcgtcgccc aacgtgatgg caccggtttg cacatgcagc aacgtggcgt tgcgcaggct
      121 ggctccaagc gtctgtgcat cggtcagcga cgcgagcgcg tttgcgcgtg ccatggggtc
      181 ggattcactg gctgattcga cttgcggatg gacctcgtcc cagtgccgct cgagcgcgtc
      241 ggcagcgagc gcgaggccat tcgcgtagcc tgcgagcccg tcgatctccg tccaggcaag
      301 cgtcagcagc gcgatcaccc gcaggtccgt ggtgcgttcg agcagacgcg tggcttgccg
      361 ctcgacctgc cgccagtcgg gcgggtcggc tgcgatcacg gcgtcgccaa actgttgttc
      421 gcgcttgctg cttgccgcct gctgcaattc gatgaacgcc gtgtcgtatt cgagattggc
      481 gccgcacggg tgcgtcgggg ccggctcgtt cgaggcgcga accgctgcgt attccatatg
      541 cttttccacg tctattcgtc gccgccgtta atcgggtaag cccgtttctt ttaagactta
      601 attagatatt tcttaattcg ccatctcttg acccgctatt ttaagaacac gaatttttca
      661 agccccgccg cctattgctt agtcggtgat cccgcgcttt tttcagatgc gttgagacat
      721 ttcttaagtt ggcatctttg caataggcgt gtctattcaa accgatgtgc gtgtcggtgt
      781 gggcaaaacg attcgtattg gatgcgaggt agtaagattc ttaataaata gtgcgaattg
      841 atattaatgc gattgttttg gtaatgcaag ccgcatgatc gcactttttc gatttggcac
      901 gcaaaatgac ttaacgattt aatgattgct tcgggttagt cacaattacg gtgaaggcag
      961 cgctaaaata aaccattcag ttgatgcgcg tccccggaat ctcatttccg tcatgtcgtg
     1021 tttgacatcg acacaaaaag gcgcaaacgt ggaattgatg tcaacagtga tggcgagatg
     1081 gaacggatgc gcggcccgat ggttttacgg agtcgatgtt cacaaggttg aagccgattg
     1141 attttgtgcc gaaggaccat tcattgcgtc cgatcattgc gtccgatttg cagctgattc
     1201 aaggacgccc taagcgcatt ggcaacgctt gcgcggatgt acgaggctga cgcgagaggt
     1261 gaggtggtcg gccaagcatt gcaccggaga agctggtgcg ggcactactg atgcaggtgc
     1321 tgtactcgat tcgccgcgag cgcatgttga tggagcaaat ttcctacact atgttgttcc
     1381 ggtggttcgt cggcctgccg atgcacggaa cggtttcgga tcattcggcg ttcagcaaga
     1441 accgcgaccg gttgcccgcg aacgtatttc atgcatttca ttaagtgcga actctgcaat
     1501 agcgtgctcc gtcgcccgtc acagtgctgc aagtcccgcc cggccgggct ttgcggcctg
     1561 tctacagtcc attcgatcag tgcatggccg caagcaccgg agtgctacaa tagtcggctt
     1621 tccggcgctc ctggcgccac gacagccggc gggacgggca agcagctatt gtgggttctg
     1681 aggggccggc gggtcagcag gccaatgtgc tttcatattg cttgccgtga tttgtttcat
     1741 accctggcta tttgtcgtaa agacagcgca gcatgcgctt gctaccttgt tgtaacttgc
     1801 cgtttgagcc gtttgtacta accatatgta ctacgctgcc cggttgtatc agaccggatc
     1861 aggcagaaat tcgcagaggt cgaagccttg cgagttcgaa gtccgcgcgt tgatcgtcgt
     1921 ttgccggttg catcgacgaa acacgcggtt cttcttcatc cgatgtccat gagcggtgga
     1981 atgaccgctc gcgcgccgct ccggcgcatt tttagcgaaa gcgaaagcca ccaaagtcac
     2041 catgcccgat tccgtcgcca cgaacccgtc cgccgcttta tccgacgccg cacccggggc
     2101 tgatttcagc actgaagttc aagcgagtcc tgccacgccc gctgtcgcgc tcgagttggg
     2161 cgccactgag tccgcggtgc ccggtccagt gcccacgttc gaccagttcg gcttgtccgc
     2221 cgacatcctg cgagcggttg tcgattccgg ttacacgatc cccacgccga tccaggcgca
     2281 agctattcct gtggtgctgg ccggccgcga catgatgggc gccgcgcaaa cgggcacggg
     2341 caagacggcg agcttttcgc tgccgatcat ccagcgcctg ctgcccatgg ccagcacgag
     2401 cgcatcgccc gcccgccacc cggtgcgcgc gctgattctc acgccaacgc gtgaacttgc
     2461 cgaccaggtt gccgcgaacg tgcaggcgta ttccaagcac acgcccttgc gcagcacggt
     2521 cgtgttcggc ggtgtcgaca tgaacccgca atcggaagcg ctgcggcgcg gtgttgaaat
     2581 tctgattgcc acgccgggac gattgctcga tcacgttcag cagaagacgt tgaatcttgg
     2641 ccaggtgcaa attctggttc tcgacgaagc cgaccggatg ctcgacatgg gcttcctgcc
     2701 ggatctgcag cgcattttga atctgctgcc caaggaacgt cagacgctgc tgttttcggc
     2761 cacgttttcg ggcgaaatca agaagcttgc agcaacctat ctgcgcaatc cgcaaaccat
     2821 tgaagtcgcg cgcagcaatt ccacgaacgc gaacgtgcgg cagatcgttt tcgaagtcgc
     2881 ggaaagcgat aaatctggtg ccgtgacgca actgattcgt gagcgcggcc tgaaacaggt
     2941 gctggtgttc tgtaacagca agatcggcgc gagccggttg tcgcgcgtgc tggagaagga
     3001 cgggattgtt gcgacggcaa ttcacggcga tcgtacgcag ggcgagcgga tgcaggcgct
     3061 cgaggcattc aagaagggcg agatcgaggc gctggttgca accgatgtgg ccgcccgagg
     3121 tctcgacatc accgacttgc cggcagtgat caacttcgac ctgccgttca gcgcggaaga
     3181 ttacgttcac cggattggcc gtacgggtcg cgcgggcgca acgggtgacg ctttgtcgtt
     3241 atgcagcccg aacgagcgca agcaactcgc cgatattgaa aagctgatca agcggccgct
     3301 ggaagtcatg gtgctgaagg tcgacgtgcc ggtgcggcgc gaatcgtctt ccgctcctcg
     3361 tcgcgaagag cgctcgggcc ggccggagcg cggtgagcac cggcatgcgc gtagcgagga
     3421 accgcgtcgt cgttcgacgt cgttcgagcg ttcgcatacg cgtcagcaac ctatcgacga
     3481 tttcttcctg aagccgtacg agccgtcggc ggcatcgacg agaaaaacgc aggatgatgc
     3541 ggctgcggaa gccgaacgca agaacacgcc gcgtcagccg ctggctgcgc tgctcggcgg
     3601 cttgggtatg ccgcggagaa cgccttcggg gtcttgaggt tagaggctgg ttgttaaggc
     3661 cagtgaacag ggtcagtgaa aacaaaaaag cggcagagat gccgcttttt tgtttttcaa
     3721 cgctccattt tcaccgtcct aaaatcaacg ccctaaatcg cgaaccgctt tgcccactgc
     3781 gcggttacat cggagaaaaa cgcttcgagc gaaccggccg gagagggatg cagaccaaga
     3841 tgcttcgccg cttgcgtcaa ctcaactagc ggggctccgg tatcaagcgc cgttgcgcct
     3901 gtttgcttgc tgagtttctc acctagctcg ttcactatga cgggcacgtg cagataagca
     3961 ggcgttgaaa cacccaggca gcgctgcaaa taaatctgcc gcgcggtcga gtccagcaga
     4021 tcggcgccgc gcacgatatg cgtaatgcca gcatccgcgt cgtcgacaac aaccgccagt
     4081 tgatacgccc actctccgtc cgcacgctta agtacgaaat caccgacttc gcttgccaag
     4141 tcctgagtct gcgttccctg ccagcgatcc ttgaagctca gaacggcggc gtcgccatct
     4201 ggaacgcgca tccgccacgc gcgcggtggt tttccatgca gcccgttgcg acacgtaccc
     4261 ggataagcca gcgtggcgtg tcgagcgtgg gtgtggcggg tgtgg
//
LOCUS       DATGBK010000911         1669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_10694, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000911 DATGBK010000000
VERSION     DATGBK010000911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10694"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1669)
                     /locus_tag="VKJ77_12765"
     CDS             complement(<1..>1669)
                     /locus_tag="VKJ77_12765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HMC46186.1"
                     /translation="VQLINSAAFNEFSAAAKSLSGEADLQVRGAQPTFDEHWYPRLAT
                     TPGVALASPVLDLDVTVPGQSAALKVLGIDVFRASRITPELIGVPSAQRPLDSLSDDA
                     IFLSPAAQQWLHAAPGDHVALLSGTSIVRFRVAGGLVRTRPGQRVAVMDIAAAQWRFG
                     FEGKLSRVDLQLQRGVDREHFKRELQERLGNQLVVAETRDDESRTDRLSRAYRINMNV
                     LALVALFTGAFLVFSTQALAVVRRRAQFAMLRVLGYTRDQLLRQILMEGALLGVAGSM
                     LGLALGYALSSIALRFFGSDLGGGYFPGVQPHVSFEPVASAIFLALGIGVSVLGSLVP
                     ALEAARARPAAALKAGSEEGALARLSSPWPAVICLALAGILALLPPLFDVPILGYLAV
                     ALLLVGGIALMPRCTAIVFTGLSRWHAKRRTRAVTTLALARLANAPGQASIAMGGVLS
                     SFALIVAMAIMVASFRVSVDEWLTHLLSADLYVRVAANGNTASLSPGQQMAIAATPGI
                     RHAAFNRTSHLTLDPARPAVTLLARDIDATDPGAAMQMTGPVLPASAL"
BASE COUNT          345 a          516 c          548 g          260 t
ORIGIN      
        1 agggcggacg ctggaagtac agggccggtc atctgcatgg ctgcgcccgg atcggttgca
       61 tcgatgtcac gcgcgagcag cgtcaccgcg gggcgggccg ggtccagcgt gagatgcgac
      121 gtgcggttga acgcggcatg cctgatgccg ggcgttgcgg cgattgccat ttgttggccg
      181 gggctcaggc tcgcggtgtt gccattggcc gcgactcgaa catacaggtc cgccgacagg
      241 aggtgggtca gccattcatc gacagataca cggaaactcg cgaccatgat cgccatcgcg
      301 acaatcagcg caaaactcga cagaacgccg cccatggcga tcgatgcctg cccgggtgca
      361 ttggcgaggc gggcgagcgc cagcgtcgtg acggcgcgcg tacggcgttt ggcatgccat
      421 cggctcaggc cggtgaacac aatcgccgtg catcgcggca tcaacgcgat accgccaacc
      481 aacagcagcg caacagcgag ataaccgagg atagggacat cgaataacgg cggcaggagc
      541 gccagtattc ctgcgagcgc gaggcaaatc actgctggcc agggcgacga cagccgcgcc
      601 agcgcgcctt cttcgctgcc cgctttgagc gccgccgccg gccgtgcgcg cgccgcttcg
      661 agcgcaggga cgagactgcc gagcacagac acgccgatac ctaacgcaag aaatatggcg
      721 cttgcaacag gctcgaaact gacatgaggc tgcacgcccg ggaagtagcc gccgcccagg
      781 tcgctgccga agaaacgcag cgcgatgctc gacagcgcgt aacccagtgc gaggccgagc
      841 atggaaccgg ctacaccgag gagcgcccct tccatcaaaa tctgccgtag aagctggtcg
      901 cgcgtatagc ccaatacgcg aagcatcgcg aactgcgcgc gacgtcggac gaccgctagc
      961 gcttgcgtcg aaaacaccag gaaagcgccg gtgaaaagcg ctaccagcgc gagcacgttc
     1021 atgttgatgc gataagcgcg cgagagacgg tcggtacggc tttcatcgtc gcgtgtttcg
     1081 gcgacgacca gttgattgcc aagccgctct tgcaactcgc gtttgaagtg ttcccgatcg
     1141 acgccgcgct gcagttgcaa atcgacgcgc gagagttttc cttcaaatcc gaaacgccac
     1201 tgcgcggcgg cgatatccat caccgcgacg cgttgtccag gccgcgtcct gactaagcca
     1261 ccggccactc taaaacggac aatggacgta ccgctaagca gcgcaacgtg gtcgccgggc
     1321 gccgcgtgaa gccactgttg cgcagcgggt gagaggaaga tggcgtcgtc ggagaggcta
     1381 tcgagcggac gctgagcaga cggcacgccg atcagttccg gcgtgatgcg gctcgccctg
     1441 aagacgtcga tacctagcac tttcagcgca gcgctctggc cgggcacggt cacgtccaga
     1501 tccagcacgg gactggctag tgctacgccc ggtgtcgtag cgagacgcgg ataccaatgt
     1561 tcatcgaagg tgggctgtgc gccgcggacc tgcaagtcgg cctcgccgga aagacttttg
     1621 gcggctgcgg aaaactcgtt gaatgcggca ctgttgatga gctgcacgg
//
LOCUS       DATGBK010000912         2143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_80222, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000912 DATGBK010000000
VERSION     DATGBK010000912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80222"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..982)
                     /locus_tag="VKJ77_12770"
     CDS             complement(<1..982)
                     /locus_tag="VKJ77_12770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC46187.1"
                     /translation="MTSVLFRNGALLDPLQPELIPGHEVLVEDGQIKEVSDRPIKTAS
                     ARVIDLKGKTLMPGLIDLHVHVIAVEFNLPRVMTLPNVLVTLRAVPLMRAMLRRGFTT
                     IRDAGGAGYPFKQAVEAGLAEGPRMFVSGRALSQTGGHGDMRTRTDYMPPDAPCGCCV
                     RVGALTRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGAWGYSEDEIRAI
                     VAEARGRQTYVLAHAYTPDAIARAVRCGVRTIEHGNLIDDATARLVAEHDAFVVPTLV
                     TYEALASEGGKYGLPEASLAKVADVHEAGLRSLEIMKRAGVRMGFGTDLLG"
     gene            1432..>2143
                     /locus_tag="VKJ77_12775"
     CDS             1432..>2143
                     /locus_tag="VKJ77_12775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018309030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC46188.1"
                     /translation="MDVVQTERASEIAKRVEEFVRTVVVPYERDPRCGSHGPSEELVR
                     ELRGKARVAGVLTPHILPGGDHLTQLEAATVLKQSGLSPLGPVAVNTAAPDEGNMYLI
                     GKIGTAAQKERFLAPLVAGDARSAFFMTEPASDGGAGSDPSMLQTTARHDGGHWVIDG
                     TKAFITGAEGASVGIVMARSNTGEDGDDKIRATMFLVDLPHPAIHLERILDTIDSSMP
                     GGHAVVRINGLRVPDNQVL"
BASE COUNT          413 a          668 c          691 g          371 t
ORIGIN      
        1 cacccagcaa atccgtgccg aagcccatgc gcacacccgc gcgcttcatg atctccaggg
       61 acctcaggcc ggcttcgtgt acgtcggcca ccttcgcgag gctcgcctcg ggcaggccat
      121 atttgccacc ctcgctggcg agcgcttcgt aggtcaccaa cgtgggaacc acgaaggcat
      181 cgtgctccgc aacgagacgt gcagtcgcgt cgtcgatgag attgccgtgc tcgatcgtgc
      241 gcacgccgca gcgcaccgca cgcgcaatgg cgtcgggcgt gtaggcatgg gccagcacgt
      301 aggtctggcg gccgcgcgcc tcggccacga tcgcgcggat ctcgtcctcg gagtatcccc
      361 atgcaccgac ggggtcggtc ggcgaggcaa caccgcccga cgccatgatc ttgatctggt
      421 ccgcgcccat ctggagttct tcgcggacgg cacgtcgcac ttcatccacg ccgtccgcta
      481 cccgtgtgag agcaccaacg cgcacgcagc atccgcaggg cgcatccggt ggcatgtagt
      541 cggtgcgcgt gcgcatgtcg ccatgaccgc cggtctggct cagcgcgcgg ccggagacga
      601 acatgcgcgg gccctcggcc agtcctgctt ccacggcctg cttgaacgga taaccggcac
      661 cgccggcgtc gcggatggtg gtgaaccctc gccgcagcat cgcgcgcatc aagggcacgg
      721 cgcgcagcgt gacgagcacg ttgggcaagg tcatcacgcg agggaggttg aattcgaccg
      781 cgatgacatg cacgtggaga tcgatcaggc cgggcatcaa cgtcttgcct ttcaaatcga
      841 tcacacgggc actggcggtc ttgatcgggc ggtcggagac ttccttgatt tgaccgtctt
      901 cgaccaggac ctcgtggccg gggattaatt ctggctgcaa cggatccagc agcgctccgt
      961 tgcgaaacaa caccgacgtc atcgcgactc tcctgagaag gtggaatccg gggcgcggac
     1021 tgcgggagtg gacgcgccag cttggctagg actatatgag cagcaaacta tacgccgcgc
     1081 ttgggcgagc gcgctagcgt gtcattaatt gcatagggag aagtggcgag gtaagcagca
     1141 ggggttacgc catcaatgac cgccggttca ggacgttgat caccgggcgt tctagtagcg
     1201 cgagccccgg gatcaacgcg gcgaaccacg ccgaggcgag atagacgagc actcgaacaa
     1261 gactatgatt gtcctcatac aactcgaccg cagcgttact ggctggtccg gcgcatcgct
     1321 atcatgacgc cgacaggcaa cgtcgtggtg tcgacaccgg ttgactgatc aacccgaaga
     1381 cggtgcccgc gcgtgacgtg gcgccaaaac aggagaccct gcatgagcag catggatgtt
     1441 gtacagacag agcgtgcgag cgaaatcgcc aagcgggtgg aagagttcgt gcgcacggtg
     1501 gtggttccat acgaacgcga tccgcgttgc ggcagtcacg gcccgagcga ggaattggtg
     1561 cgcgaactgc gcggcaaggc gcgtgttgcg ggagttctca cgccgcatat cctgcccgga
     1621 ggcgatcatc tcacgcagct cgaagccgca accgtcctga agcaatctgg cttgtcgccg
     1681 cttggcccgg tcgccgtaaa taccgccgcg cctgacgaag gcaacatgta cctgatcggc
     1741 aagatcggca ccgcggcgca gaaagaacgg tttctcgcgc cgctcgtagc gggcgatgct
     1801 cgctcggcat tcttcatgac tgaacccgcg tccgatggcg gcgcgggctc cgacccctcc
     1861 atgcttcaaa ccacggccag acatgatggc gggcactggg ttatcgacgg cacgaaggct
     1921 tttattaccg gcgctgaagg ggcatcggtc ggcattgtga tggcgcgcag caacacgggc
     1981 gaagacggtg acgacaaaat cagggcgacc atgtttctgg tcgacttgcc gcatcccgcc
     2041 attcatctcg agcgcatcct cgacacgatc gacagttcaa tgcctggcgg tcacgcggtg
     2101 gtgcgtatca atggtttgcg agtgccggac aatcaggtgc tgg
//
LOCUS       DATGBK010000913         1671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_265676, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000913 DATGBK010000000
VERSION     DATGBK010000913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265676"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..756
                     /locus_tag="VKJ77_12780"
     CDS             <1..756
                     /locus_tag="VKJ77_12780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006464248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC46189.1"
                     /translation="GLFRAARQFQAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLG
                     LLAPSAGSVLIDGKQIDPRASLEMAQRIQPIFQDPYSSLNPRKTVAQIVGLPLMLHKR
                     GTVAERNAEVKRMLDLVGMPERTHRQYPNQLSGGQRQRVAIARALILRPGILVCDEPT
                     SALDVSVQAQILNLLLDLKAEFGLSYLFISHDLGVVEHLADRVAVMYRGSIVEQKSRE
                     AIFSNPEHPYTQMLLSSVLTPEPGLGLPELAPF"
     gene            817..>1671
                     /locus_tag="VKJ77_12785"
     CDS             817..>1671
                     /locus_tag="VKJ77_12785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HMC46190.1"
                     /translation="MSRTRAIDLATSYFDDGHFMHVLAQRVAQRTESQSAASLPALYA
                     YLTDTIVPELEALGFTWQVIDNPLPGKSPFLIAERIEDPAALTVLTYGHGDVVLGYDE
                     QWRSGCEPWKIVVEGDRWYGRGTADNKGQHTINLAALAQVIEARGGQLGFNVKVILEM
                     GEETGSPGLDAVCAQHRDALKADVFIASDGPRVSASRPTLFLGSRGNLNFTMKLQLRD
                     GAHHSGNWGGLLRSPGIRLANAIASMVDERGRILVKGLLPDSLPPAVRDALTSIEVGG
                     GPNDPEVDP"
BASE COUNT          300 a          517 c          523 g          331 t
ORIGIN      
        1 ggattgtttc gggccgcccg ccagtttcag gccgtcaatg acgtctcgtt gcggctttac
       61 cgcggggaga ccttggggct agtgggagag tccggctgcg gcaaaagcac gctcgcaaag
      121 atgctgctgg gcttgctcgc gccgagtgcg ggcagcgtgc tgattgacgg caagcagatt
      181 gatccgcgtg cgtcgctcga gatggcgcag cgtatccagc caatctttca ggatccctat
      241 tcatcactga atccacgcaa gaccgtggcg caaatcgtgg gcttgccgct tatgttgcat
      301 aagcgcggga ccgttgccga acgcaacgcc gaggtcaaac gcatgctcga tctcgtcggc
      361 atgcccgagc ggacccaccg gcagtatccg aaccagttgt cgggtgggca gcgccagcgg
      421 gtggcgattg cgcgcgcgtt gatcctgcgc ccggggattc tggtttgcga cgagccgaca
      481 tcggcgctcg atgtctcagt gcaagcccag attctcaacc tgctgctcga tctgaaggcc
      541 gagttcggtc tcagctattt gttcatcagc catgatctgg gcgtggtcga gcatctggcc
      601 gatcgcgtcg cggtgatgta ccgcggcagc attgtcgagc agaagagccg cgaggcgatc
      661 ttctctaatc ccgaacatcc gtacacgcaa atgctgctgt cctccgtgct gacgcccgag
      721 cccggtctcg gcctgcccga actggcgccg ttctgatttt ccgcgtccca tgacgcttga
      781 ccactgatcc ttgatcccaa ccggagacac gacccgatga gtcgcacccg agccatcgac
      841 ctggccactt cctatttcga cgatggtcat ttcatgcacg tgctggccca gcgcgtggcg
      901 caacgcaccg agagtcagtc ggctgcgagc ctgccggcgc tatacgcgta cctgaccgat
      961 acgatcgtgc ccgagctcga agcgctcggc ttcacctggc aggtcatcga taacccgttg
     1021 ccgggcaaaa gccccttcct gatcgccgag cgcattgaag atccggccgc gctcacggtg
     1081 ctgacctatg gccacggcga tgtcgtgctg ggctatgacg aacaatggcg cagcggctgc
     1141 gagccgtgga agatcgtggt cgaaggcgat cgctggtacg ggcgcggcac cgccgacaac
     1201 aaaggccagc acaccatcaa cctcgccgcg cttgcacaag tgatcgaagc acgcgggggg
     1261 caactcggtt tcaacgtcaa ggtgatcctc gagatgggcg aggaaaccgg gtcgccaggg
     1321 ctagatgctg tctgcgcgca acatcgcgac gcgttgaagg ccgatgtgtt cattgcgtcc
     1381 gacggcccgc gtgtctcggc atcgcgaccg acgctgttcc tcggttcccg cggcaatctc
     1441 aacttcacga tgaagctcca gttgcgcgac ggcgcccatc attcgggcaa ctggggtggg
     1501 ctgttgcgta gtcccggcat tcgcctcgcc aatgcgattg cttcaatggt cgacgagcgc
     1561 ggacggattc tcgtgaaggg tctgttgcct gactctttac cgccggcggt gcgtgatgca
     1621 ctgacatcga ttgaagtggg cggtggcccg aacgatcctg aagtcgatcc g
//
LOCUS       DATGBK010000914         1869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_173040, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000914 DATGBK010000000
VERSION     DATGBK010000914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173040"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..1192
                     /locus_tag="VKJ77_12790"
     CDS             113..1192
                     /locus_tag="VKJ77_12790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46191.1"
                     /translation="MLDHLVAMTDDTGMIQHARLDIPNRSTGYCTDDIARGLIVGVEA
                     AARSATEAIASKLVTTYLAYLHDAQMSDGWFHNFMGYDRVWQDVRGTPDSFGRALWGL
                     GHCMRFAPQDSWQRVATDIFMRALPHVEQLEHRRSHAYAALGCIHAFQSRHGDTNALR
                     PAIADSLSSIVRDFERHNAPGWTWCEDLMTYDNARLPEALIRGGAVLGSDRFVQVGLD
                     MLDFYASVVIEDGIFVPVGNNGWYRRGGVKARFGQQPLEAAAMIDASLAAHERTGEER
                     YRRYADIAYDWFFGRNTAQALLVTNGGCRDGIDEQGVNANMGAESTLAYLLGAISAST
                     SSGKRLTVASRGVAAAPVGGKSARR"
     gene            1263..>1869
                     /locus_tag="VKJ77_12795"
     CDS             1263..>1869
                     /locus_tag="VKJ77_12795"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HMC46192.1"
                     /translation="MAKIASMIVETELLNDVQRAAVEHTDGPVLIFAGAGSGKTRVLT
                     HRIAYLLNEKKVFPDRILSVTFTNKAAGEMKSRLERMVGAAARDLWVGTFHSMCVRIL
                     RRDGKKIGIASNFAIMDDTDQKAIVRDILHDLDYDERQVTPGAALAEISKAKNNLWSP
                     EQYETKNASFIGERYANVYREYERRLKESNGLDFDDLIGRTI"
BASE COUNT          369 a          584 c          569 g          347 t
ORIGIN      
        1 tgaatacggc cgtctcttct cggatctctt gcccgataac agcacgactg aggtcttcgc
       61 gcttccggcg taagccgcaa acgtgccgct tatgagtccg aagcgctacc ccgtgttgga
      121 tcacctcgtc gcgatgaccg acgataccgg gatgatccag cacgcgcgcc tcgatatccc
      181 gaaccgctcg acgggctact gcaccgacga catcgcgcgc ggtctcatcg tcggcgtcga
      241 agccgccgcc cgctcggcaa ccgaagcaat cgcatcgaag ctcgtaacga cctatcttgc
      301 gtatctgcac gacgcgcaaa tgagcgacgg ctggttccat aacttcatgg gttacgaccg
      361 cgtgtggcaa gacgtgcgcg gtacgccgga ttcgttcggc cgggcgctct ggggcttggg
      421 tcattgcatg cgcttcgcgc cgcaagattc gtggcagcgc gtcgcgaccg atatcttcat
      481 gcgcgcgttg ccgcacgtcg aacagctcga acatcgccgt tcgcatgcct acgcggcgct
      541 cggctgcatc cacgcgttcc aatcccgcca cggcgatacg aacgcgctgc ggccggcgat
      601 tgcggattcg ctaagttcga tcgtgcgcga tttcgagcgg cataacgcgc cgggctggac
      661 ctggtgcgaa gatctgatga cctacgataa cgcccgtttg ccggaagcgc ttatccgcgg
      721 cggcgcggtc ctgggcagcg atcggttcgt ccaagtcggt ttggatatgc tcgacttcta
      781 cgcatcggtc gtgatcgaag acggcatctt cgtgccggtc ggcaacaacg gctggtaccg
      841 gcgcggcggc gtgaaagcgc gcttcggcca gcagccgctc gaagcggcag cgatgatcga
      901 tgcgagtctc gcggcgcacg agcgcaccgg agaagaacgc tatcggcgct acgcggacat
      961 cgcgtacgat tggtttttcg gccgcaatac cgcgcaagcg ctgctcgtaa cgaacggcgg
     1021 ctgccgcgac ggcatcgacg agcagggcgt caacgccaac atgggcgccg agtccacgct
     1081 tgcgtactta ctcggcgcaa tctcagcatc aacgagttcg ggcaagcggc ttactgtggc
     1141 ctcacgcggc gtcgcggccg cgcccgtggg cggcaagtcg gcccgccgct agctgccgat
     1201 tttagggccg gaaggagtgt tctggccgca tcaaatatgg catataggcc aaaaaggcca
     1261 atttggcgaa gatagcctcg atgattgtcg agaccgaact tctcaacgac gtgcaacgtg
     1321 ctgccgtcga acacaccgat ggccccgttc ttatcttcgc aggtgccggc tcgggtaaga
     1381 cccgggttct gacccaccgc atcgcatatc tgctcaatga gaagaaagtc tttccagacc
     1441 gcattctctc cgtaacgttc acgaacaaag cggcgggcga gatgaaatcg cgcctcgagc
     1501 gcatggtcgg agcggccgcg cgcgacctat gggtcggcac gttccattcg atgtgcgtgc
     1561 gtattctgcg ccgcgacggc aagaagatcg gcatcgcttc gaacttcgcg attatggacg
     1621 acaccgatca aaaggcgatc gttcgcgata ttctgcacga cctggattac gacgaacgcc
     1681 aggtaacgcc gggcgccgcg cttgcggaaa tctcgaaggc gaagaacaac ctgtggtcgc
     1741 ccgagcagta tgaaacgaag aacgcttcgt tcatcggcga gcgctacgcg aacgtctatc
     1801 gcgaatacga acgccgcctc aaggaatcca acggcctcga tttcgacgac ctgatcggtc
     1861 gcacgatcg
//
LOCUS       DATGBK010000915         3078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_173063, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000915 DATGBK010000000
VERSION     DATGBK010000915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3078
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173063"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2037)
                     /locus_tag="VKJ77_12800"
     CDS             complement(<1..2037)
                     /locus_tag="VKJ77_12800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HMC46193.1"
                     /translation="MPDLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWL
                     IQQGFASPTTILAVTFTNKAAKEMMARLTAMMPIDTRGMWIGTFHGLCNRMLRAHFRD
                     AGLPQTFQILDTSDQLSAIKRLMKGLNIDDEKYPAKNLQYFINNAKEQGLRPKDVDAT
                     DSFNMKFVELYAAYEQQCQREGVVDFPELLLRCYELLAHNPPLRAHYQARFRNILVDE
                     FQDTNKLQYAWLKMLAGEHNAIFAVGDDDQSIYAFRGANVGNMHDFEREYHVRNMIKL
                     EQNYRSHGHILDTANFLIAKNSRRLGKNLRTDAGHGEPVRVYEAATDTQEAAWIVEEI
                     KAMIHAGSARGEIAILYRSNAQSRTIEHTLVNAGIAYRVYGGLRFFERQEVKHALAYL
                     RLIDNPNDDTAFSRVVNFPTRGIGARSIEQLADAARLYNCSMAAAVPYVMGKAGSSIG
                     AFAQLIAKMRAETQQMSLPETVEYVVRASGLATHYENEREGQDRLENLQEVVNAAAAF
                     VQEEGYGLDTPARSIPLRPGATNAPEIGLATDDPSVDVLDPESPADPAQNPDTMTPLA
                     GFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFMAVFITGLEEGLFPHENSAQETD
                     GLEEERRLAYVAITRAKERLYLSFAQSRMLHGQTRYNIRSRFFDELPEGSLKWLT"
     gene            2274..>3078
                     /locus_tag="VKJ77_12805"
     CDS             2274..>3078
                     /locus_tag="VKJ77_12805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HMC46194.1"
                     /translation="MSDNTSDNTLAKSFEPQNIEAHWGPEWEKRGYAAPTLIEGKKDF
                     SIQLPPPNVTGTLHMGHAFNQTIMDSLTRYHRMLGENTLWLPGTDHAGIATQIVVERQ
                     LDAQGVSRHDLGREEFLKRVWEWKQKSGSTITGQVRRLGASIDWSREYFTMDDKMSPV
                     VLDVFVTLYKQGLIYRGKRLVNWDPVLGTAVSDLEVASEEEAGSLWHIQYPLPDGSGH
                     VTVATTRQETMLGDTAVMVHPEDERYALLIGKTVMLPLSNREIPVIADDY"
BASE COUNT          581 a          950 c          933 g          614 t
ORIGIN      
        1 cgtgagccac ttgagcgagc cttccgggag ttcatcgaag aaacgggaac ggatgttgta
       61 acgcgtctgg ccgtgcaaca tccggctctg tgcaaatgac agatacaacc gctccttcgc
      121 ccgcgtgatt gccacgtacg ccaggcggcg ttcctcttcg agtccatcgg tttcctgcgc
      181 gctgttttcg tgcgggaaca ggccttcttc caggcccgtg ataaacaccg ccatgaattc
      241 aaggcccttg gctgcgtgca ccgtcatcag ttgcacggcg tcctgaccgg cttgggcctg
      301 gttgtcgccg gcttcgagcg atgcgtgcga caggaacccg gccagcggcg tcatggtgtc
      361 gggattttgc gcgggatcgg cggggctttc agggtcgagc acatcgacgg acggatcgtc
      421 ggtcgccaag ccgatttccg gcgcgttcgt cgcgcccgga cgcagcggaa tggagcgcgc
      481 gggggtatcg agcccgtagc cctcctcctg cacgaacgcc gccgcggcgt tcaccacttc
      541 ctgcaagttc tccagccggt cctgaccttc gcgctcgttc tcgtaatgcg tggcgagacc
      601 gcttgcgcga accacgtatt ccacggtttc gggcaggctc atctgctgcg tttcggcccg
      661 catcttggcg atcagttgcg caaacgcgcc gatgctcgaa cccgccttgc ccatcacata
      721 gggaacagcg gcagccatcg aacagttgta gaggcgcgcg gcatcggcca gttgctcgat
      781 cgaccttgca ccgatcccac gcgtcggaaa attcacgacg cgggagaacg cggtgtcgtc
      841 gttcgggttg tcgatcaggc gcagatacgc aagcgcgtgc ttcacttcct ggcgttcgaa
      901 gaaccgcaag ccgccataca cgcgatacgc aatgcccgcg ttcaccagcg tgtgttcaat
      961 ggtccgcgac tgcgcgttgc tcctatacag gatggcgatt tcgccgcgcg ccgagccggc
     1021 atggatcatc gccttgatct cctcgacgat ccacgccgcc tcctgcgtat cggtcgcggc
     1081 ttcgtacacc cgcacgggtt caccgtgacc ggcgtcggta cgaagattct tgccgagccg
     1141 ccgcgagttc ttggcgatca ggaagttggc ggtatcgaga atatgaccgt gcgagcgata
     1201 gttctgctcg agcttgatca tgttgcgcac gtggtactcg cgctcgaagt cgtgcatgtt
     1261 gccaacgttc gcgccgcgga acgcgtagat ggactgatcg tcgtcgccaa ccgcgaagat
     1321 ggcgttgtgc tcgcccgcca acatcttcag ccacgcgtac tgcagcttgt tcgtgtcctg
     1381 gaactcgtcg acgaggatgt ttcgaaagcg cgcctgatag tgcgcgcgca gcggcggatt
     1441 gtgcgcaagg agttcatagc agcgcagcag cagctcggga aaatccacca cgccttcgcg
     1501 ctggcattgc tgctcatacg ccgcgtacaa ctcgacgaac ttcatgttga aggaatcggt
     1561 cgcgtcgacg tctttcgggc gcaggccttg ttccttggcg ttgttgatga agtactggag
     1621 atttttagcc ggatatttct cgtcgtcgat attcaggccc ttcatcaggc gtttgatcgc
     1681 cgacaactgg tccgatgtat cgaggatctg gaaggtctgc ggcaggcctg cgtcgcggaa
     1741 atgtgcacgc aacatgcggt tgcacaggcc gtgaaaggtg ccgatccaca taccgcgggt
     1801 gtcaataggc atcatcgcgg tcaggcgcgc catcatttcc ttcgcggcct tgttcgtgaa
     1861 ggtgacggca agaatggtcg tgggcgaggc gaacccctgc tggatcagcc aggcgatacg
     1921 cgtgatgagt acgcgcgtct tgccgctgcc cgcgcccgcg aggataagcg ccggctcgtt
     1981 cggcagcgtg acagcggcga gttgttcagg gttcagattg gcgagcagat cgggcatggg
     2041 ggagttttcc ggtgggacgg gtattataaa tcggcagggg gatggtcgtt ggcacttggg
     2101 ttttggacag gctcgctcgc tccggctcgc gggcacccac ccgaatcgcc gccgccctcc
     2161 caagcacaac cccgagtgcg aatgaagaac cttcccgccg accccaccct gtctacgcct
     2221 tataattccc cgacccccgc ttcttttacg catttttcgg cagatcccac cccatgagtg
     2281 acaacacgag tgacaacacg cttgcgaaga gtttcgagcc ccagaacatt gaggcccatt
     2341 ggggcccgga atgggaaaag cgcggctacg ctgcgccgac cctgatcgaa ggcaaaaaag
     2401 atttctcgat ccaactcccg ccgccgaacg tcaccggcac gctgcacatg ggtcacgcgt
     2461 tcaaccagac catcatggac agcctcaccc gctaccaccg catgctcggc gaaaacacgc
     2521 tgtggctgcc tggaacggat cacgcaggga tcgccacgca aatcgtcgtg gaacggcagc
     2581 tcgatgcaca aggcgtctcg cgccatgatc ttggtcgtga agaattcctg aaacgtgtct
     2641 gggaatggaa gcagaaatcc ggctcaacca tcacgggtca ggtgcgccgc ctgggcgcgt
     2701 ccattgactg gtcgcgcgaa tatttcacga tggacgacaa aatgtcgccc gtcgtgctgg
     2761 acgtgttcgt cacgctgtac aagcaaggcc tgatctatcg cggcaaacgg ctcgtgaact
     2821 gggacccggt actcggtacc gccgtttcgg acctggaagt cgccagcgaa gaagaagccg
     2881 gcagcctctg gcacatccag tatccattgc ccgatggctc cggccacgtg acggtcgcca
     2941 ccacgcgcca ggaaaccatg ctcggcgaca ccgccgtgat ggtccacccg gaagacgagc
     3001 gctacgcgct cctgatcggc aagacggtca tgctgccgtt gtcgaaccgg gaaattccgg
     3061 tgatcgctga cgattacg
//
LOCUS       DATGBK010000916         1639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_173067, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000916 DATGBK010000000
VERSION     DATGBK010000916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173067"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..157
                     /locus_tag="VKJ77_12810"
     CDS             <1..157
                     /locus_tag="VKJ77_12810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018441133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HMC46195.1"
                     /translation="DASIAGLLYSLMARAGGWPDHLRFALAAGAAACRMSGAHSPSLE
                     EVEDLLV"
     gene            246..476
                     /locus_tag="VKJ77_12815"
     CDS             246..476
                     /locus_tag="VKJ77_12815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011353424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46196.1"
                     /translation="MEDTIYTKGIYTATIGAYAADGGQFRGAVTLVRDDGEDGEDSEP
                     KQYDVAATSLSEDEALEEARALAHRILGELEL"
     gene            543..788
                     /locus_tag="VKJ77_12820"
     CDS             543..788
                     /locus_tag="VKJ77_12820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013337813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46197.1"
                     /translation="MPEQLFLYGVYSIHVRPIELQGTRWDAEYEIRHLDKAVQPWKTI
                     GGDNGLSSPTDAIGAAHVQAVADIEAGAGIPKPKTFP"
     gene            complement(809..1462)
                     /locus_tag="VKJ77_12825"
     CDS             complement(809..1462)
                     /locus_tag="VKJ77_12825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006484065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HMC46198.1"
                     /translation="MKLYYWPKTRAFRALWMLEELRVPYEFAYVNIRAGEQNAPAFCS
                     VNPMSKLPALDDDGVCVAESGAVLLYLADKYPQAGLGVPLDDPLRGRFLQWMFFTGAC
                     LEPAMAERMTGAPGNSVSFGWGDLGRVEKAIESALAHGPWLLGERFTAADILVSSTLQ
                     IAYMAKLIEPGGALSEYVARATSRDAHERAALIDKEEAQKVPSAASQQQTGTASLKP"
BASE COUNT          326 a          523 c          483 g          307 t
ORIGIN      
        1 cgatgcttcc attgccggct tgctctacag cttgatggca cgcgccggag gctggccgga
       61 ccatctgcgt tttgcgctcg cggcgggtgc ggcggcgtgc cggatgtcgg gggcgcactc
      121 gccgtcgctg gaagaagtcg aggatttgct ggtctgaaac gtacgcctgc gggtcaatga
      181 gagacggtca tacgcgcgat aaatgcgcgt gctagcatcg tttcaacctt tgccggaggc
      241 gcatcatgga agacacgatc tacacgaaag gcatctacac cgccacgatc ggcgcttacg
      301 ccgcagatgg cggccagttt cgaggcgccg tgacgctggt gcgggacgac ggcgaagacg
      361 gcgaggattc cgagccgaaa cagtacgacg tcgcggccac ttcgctgtcc gaagatgagg
      421 cgctggaaga agctcgcgcg ctcgctcacc ggatcctcgg cgaactcgaa ctgtgactac
      481 aacgtcggcg cgcaaagcaa gcgccgactc cgttgtcacc tcgcttgaac gggagaacca
      541 ccatgcctga acaactcttc ctctacggcg tttattccat ccacgttcgg cccatcgaac
      601 tacaggggac gcgctgggac gcggaatacg aaatccgtca tctcgacaaa gccgtgcagc
      661 cgtggaagac cattggcggc gataacggct tgtcgagccc caccgacgcc attggtgccg
      721 cgcacgtgca agccgtcgcc gacattgaag ccggcgcggg tatccccaag ccgaagacct
      781 tcccctgacg cctgagccgg gtacgacctc agggcttcag actcgccgtg cccgtctgct
      841 gctgcgaagc ggctgacggt accttctgcg cttcctcttt atcgatcaat gccgcgcgtt
      901 cgtgcgcgtc ccgtgacgtc gcccgcgcga catactccga taacgcccca cccggctcga
      961 tcagctttgc catataggcg atctgcagcg tgctcgagac gaggatatcg gcggctgtaa
     1021 agcgttcgcc gagcagccat gggccgtggg ccagcgccga ttcaatcgcc ttttcgacgc
     1081 ggcccagatc accccagccg aaactcacgc tgttgcccgg cgcgcccgtc atccgttcag
     1141 ccatggccgg ttcgagacaa gcgcccgtga aaaacatcca ttggaggaaa cggcctcgca
     1201 gcggatcgtc aagcgggacg ccgagccccg cttgcgggta tttatcggcg agatagagga
     1261 gcaccgcacc cgattccgcg acgcacacac cgtcgtcatc cagcgcgggc aacttcgaca
     1321 tgggattcac cgagcaaaac gccggcgcat tctgctcgcc cgcccgaatg ttcacgtagg
     1381 cgaactcgta tggcacgcgc aattcttcga gcatccataa cgcgcgaaac gcgcgcgtct
     1441 tcggccagta gtagagcttc atggacagat cctctttgtg gcgcgacatt gtcagggagc
     1501 gtccagatta cccgctcccg gcggtttcga gacgcgggtt aaccacacgt tagtcattcg
     1561 gtaggtgatt tccgctcatt catctcaata aatatcgatt tcgtttctgg tacgagcgtt
     1621 cgatctccaa gaacgcaaa
//
LOCUS       DATGBK010000917         2485 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_219371, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000917 DATGBK010000000
VERSION     DATGBK010000917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219371"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..643)
                     /gene="efp"
                     /locus_tag="VKJ77_12830"
     CDS             complement(86..643)
                     /gene="efp"
                     /locus_tag="VKJ77_12830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HMC46199.1"
                     /translation="MKTAQELRVGNVVMIGSDAMVVLKAEYNKSGRNSAVVKMKFRNL
                     LSTGNMESVYKADDKFDVVQLDRKEVTYSYFADPMYVFMDADYNQFEVEADMMGDALH
                     YLADGMPCEVVFYNEKAISVELPTSLVREIIYTEPAVKGDTSSGKVLKTAKLATGFEL
                     QVPLFCSIGDKIEIDTRTNEYRSRA"
     gene            complement(871..2073)
                     /gene="earP"
                     /locus_tag="VKJ77_12835"
     CDS             complement(871..2073)
                     /gene="earP"
                     /locus_tag="VKJ77_12835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0106361 - protein-arginine
                     rhamnosyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P maturation arginine
                     rhamnosyltransferase EarP"
                     /protein_id="HMC46200.1"
                     /translation="MPSSSEQLPAVSGHASVDTGAPATSIACDIFCAVIDNFGDIGVC
                     WRLARQLASEHDWQVRLFVDDLKAFHALCPAVDPALDRQSAAGVMIEHWHAPSHAGDT
                     LQIADVVIEAFGCELPAVYVSAMARREKRPVWVNLEYLSAEDWVADFHLRPSPHPRYA
                     LDKTFFFPGLGPGTGGVLKERALDAEREAFDRDAWWHARVGIAPPPSGTTVISMFAYE
                     NPAIDTLLEQWRDSATPIALLVPEGRISGAVARFFGLPDFRAGAKATSGSFSAYALGF
                     VEQPLFDALLWAADLNFVRGEDSFVRAQWAQKPFVWHIYPQGDDAHLPKLDAALAHYA
                     NDLPPGARASLERFWHAWNGVGTPDWEDFWQNRALLEQRAADWATELASVGDLAGNLA
                     EFAKTQLK"
     gene            2339..>2485
                     /locus_tag="VKJ77_12840"
     CDS             2339..>2485
                     /locus_tag="VKJ77_12840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HMC46201.1"
                     /translation="MTDSDVFDPKKSLAQLPHLPGVYRYYDEQGNVLYVGKARDLRKR
                     VSSYF"
BASE COUNT          485 a          742 c          748 g          510 t
ORIGIN      
        1 gcgccccgaa gggcgctttt tttgattctc ttttacctgg agtgtgcaac ccggccttgg
       61 cggccggccg aagccttaag cagccttaag cgcggctgcg gtactcgttg gtacgcgtat
      121 cgatttcgat cttgtcgccg atgctgcaga acagcggcac ttgcagctcg aaacccgtgg
      181 cgagcttggc tgtcttcaaa accttgcctg acgacgtgtc gcccttgacg gccggttccg
      241 tatagataat ctcgcgaacc agcgaggtcg gcagttccac cgagatggct ttctcgttgt
      301 agaacaccac ttcgcacggc atgccgtcgg cgaggtagtg cagggcgtcg cccatcatgt
      361 cggcttcgac ttcgaactgg ttgtagtcgg cgtccatgaa tacgtacatg gggtcggcga
      421 agtacgagta cgtcacttcc ttgcggtcga gctggacgac gtcgaacttg tcgtccgcct
      481 tgtacaccga ttccatgttg ccggtggaaa gcaggttacg gaacttcatc ttcacgaccg
      541 cggaattgcg gccggacttg ttgtactcgg ccttcagcac gaccatggca tcgctgccga
      601 tcatcacgac gttgccgacg cggagttctt gtgcggtctt catattaaaa aactgtcctg
      661 tacgaaaatg tgagcctgat cgctgcagtg tcgacggccg gctcgtggca gggttgcttg
      721 ctttaatcga aattaaatcg caaacccggg cgctgtagcc gtctcactga ctattcattg
      781 actatggtga cgattcccac cgtgctcatt ccactgtgga attcgttcgg aacggatggc
      841 gttccgaact gcaagccgct ggataaccgc ttattttaac tgagttttcg cgaattccgc
      901 cagatttcca gccagatcgc caacgctcgc cagttccgtc gcccaatcgg cggcgcgctg
      961 ttccagcagc gcgcggtttt gccagaagtc ttcccagtcc ggggttccca cgccgttcca
     1021 cgcgtgccag aagcgttcga gcgacgcccg cgccccgggc ggcaagtcgt tggcgtagtg
     1081 cgcgagcgct gcgtcgagtt ttggcagatg ggcgtcgtcg ccttgcgggt agatgtgcca
     1141 gacaaacggc ttctgcgccc attgcgcccg cacgaatgaa tcctcgccgc gtacgaaatt
     1201 caggtcggcg gcccagagca gggcgtcgaa aagcggctgt tcgacaaaac ccagcgcgta
     1261 agccgagaac gatccacttg tcgccttcgc cccggcccga aagtccggta ggccgaaaaa
     1321 ccgggcaacc gcaccggaaa tgcgtccttc cggcacgagc aatgcgattg gtgtggcgga
     1381 atcgcgccat tgttcgagca gcgtatcgat agccggattc tcgtatgcga acatcgaaat
     1441 gacggtcgtg ccggacggcg gcggcgcgat gccgacacgc gcgtgccacc aggcatcgcg
     1501 atcaaacgcc tcgcgctcgg catcaagcgc acgctctttc agcacaccgc cggtgccagg
     1561 gcccaggccg gggaaaaaga acgtcttgtc gagcgcgtag cgtggatgcg gcgacggcct
     1621 caggtgaaag tccgcgaccc aatcctccgc gctcagatat tcgagattca cccacacggg
     1681 cctcttctcg cggcgtgcca tcgcgctcac gtacaccgcc ggcaattcgc agccgaacgc
     1741 ttcgatcacg acatcggcga tctgaagcgt gtcgccggcg tgcgacggcg catgccagtg
     1801 ctcgatcatc acgcccgccg cgctttggcg gtcgagcgcg ggatcgaccg cggggcagag
     1861 cgcatgaaag gccttgaggt catcgacgaa cagccgcacc tgccagtcgt gttcgctggc
     1921 cagttggcgc gcgagccgcc agcagacgcc gatatcgccg aaattgtcga tgacagcgca
     1981 gaaaatatcg cacgcgatgc tggtggctgg agcgccggtg tcgacgctgg cgtggccgga
     2041 aacagccggc aattgttccg atgaagacgg catgggcaat agagcggcga tgaaccgcta
     2101 atgaatggtg aagaatggtg gacagcggtt tgaactaaac tggcgttttt aaggataacg
     2161 attcgcgcgg cgcgctgcgt tacggttgcg ttacggttga gtcaggggct tgtctgggcg
     2221 agagtgcttg ccggcgtatc gccagactga ctcggccgtg cttcatccat gctccgctcg
     2281 aatccaataa aatcaatttg ctgatctcaa gacgcgcgct ccccgccatc atccctgcat
     2341 gacagactcc gacgtttttg accctaaaaa aagcctggct cagttgccgc acctgccggg
     2401 cgtgtaccgc tattacgacg agcagggcaa cgtgctgtac gtcggtaagg cgcgcgacct
     2461 gagaaaacgc gtgtcgagct atttt
//
LOCUS       DATGBK010000918         1576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_126562, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000918 DATGBK010000000
VERSION     DATGBK010000918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126562"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..143)
                     /locus_tag="VKJ77_12845"
     CDS             complement(<1..143)
                     /locus_tag="VKJ77_12845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HMC46202.1"
                     /translation="MNSETPSTPPPDTLVIASRESRLAMWQAEHVRFALHKLYPSCDV
                     KILG"
     gene            489..>1576
                     /locus_tag="VKJ77_12850"
     CDS             489..>1576
                     /locus_tag="VKJ77_12850"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HMC46203.1"
                     /translation="MTSPGSARNARPRRNAVSKDASSAVPATAPAVRSRAATVAKASK
                     TAVSVKTAAAGTTKRVANGRAAAAVLPAPAPAEIVKNGKAPKAPSRARDNKDHPLFED
                     IRYLGRLLGDVVREQEGDEVFAVVETIRQTAVKFRREEDNEASQTLEKRLKSLSPEQT
                     VSVVRAFSYFSHLANIAEDRHHNRRRRIHALAGSAPQPGTMAYAIERLKASPNAKNTK
                     SAKATLQKFFDNALIVPVLTAHPTEVSRKSILDAQHEVARLLAERDQELTARERAHNE
                     AMLRSRVTSLWQTRMLRDARLTVADEIENALSYYHATFLEEIPALYADIEDALAEHGL
                     PARLPPFLQMGSWIGGDRDGNPNVTAPTL"
BASE COUNT          309 a          521 c          484 g          262 t
ORIGIN      
        1 ccgaggattt tgacgtcgca agatggatat aatttgtgca gcgcaaaccg cacgtgctca
       61 gcctgccaca tggctagacg gctttcccgc gaggcaatga ccagagtgtc gggcggtggc
      121 gtggaaggcg tctcggagtt cattgcaaag tcaatcggat gacgggatgg ataacaaaca
      181 atggtagcac gcacgccatt gcccaattac agtcggaccc cgtgcccgaa cgccacggcg
      241 cgggcttcgg gcgaggcgga aggacgaaga cagcaagggt gtgccgcatc atgcggcatc
      301 gccggggccg cattttatcg tgtgtccgcg gcagggcgcc ttcgcaatct cgggttccat
      361 ccgctgcggt gtaatgatgc atggcaagca gttgaacgtc gcaccggccg gcggactcgc
      421 gccctttcat cttttctggc gcccggcggc ctcggtatcc tgtctctggc tttcaagagg
      481 aattcaacgt gacgtctccc ggatcggcgc gcaacgcccg cccccgccgc aacgctgtat
      541 cgaaggatgc ttcttccgcc gtgcccgcca cggcgcccgc cgtgcgtagc cgcgcggcca
      601 cggtcgccaa ggcgtccaaa accgctgtct ccgtgaaaac ggctgcggcc gggacaacca
      661 aacgtgtggc gaacggccgc gctgccgctg ccgtgctccc tgcgcccgcg cccgcggaaa
      721 tcgtgaagaa cggcaaagcc cccaaagccc cctcgcgcgc acgcgacaac aaggaccatc
      781 cgctcttcga agacatccgc tatctcggcc gcctgctcgg cgacgtggtg cgcgagcagg
      841 aaggcgacga ggtgttcgct gtcgtggaaa cgattcgcca gacggctgtg aaatttcgtc
      901 gcgaggaaga caacgaggcg tcgcagacgc ttgaaaaacg cttgaaatcg ctctcgcccg
      961 agcagacggt gagcgttgtg cgcgcgttca gctacttctc gcatcttgcg aatattgccg
     1021 aggaccggca tcacaaccgg cgccgccgga ttcacgcgct cgccggttcc gccccgcagc
     1081 ccggcacgat ggcctatgcc atcgaacgcc tgaaggcgag cccgaatgcg aagaatacga
     1141 agtcggcgaa agctacgctg caaaaattct tcgataacgc gctcatcgtt cccgtgctga
     1201 ccgcccaccc gaccgaagtc tcgcgcaaga gcatcctgga tgcgcagcac gaagtcgcgc
     1261 ggctgctggc cgagcgcgat caggaactga ccgcgcgcga acgggcgcac aacgaagcca
     1321 tgctgcgctc ccgtgtcacg tcgctctggc aaacgcggat gctgcgcgac gcccgcctga
     1381 ccgtcgccga tgaaatcgaa aacgcgcttt cgtattacca cgcgacgttt ctcgaagaga
     1441 tccctgcgct ttacgccgat atcgaagacg cgctggccga gcacggcctg cccgcgcgcc
     1501 tgccgccgtt cctgcaaatg ggtagctgga ttggcgggga ccgcgacggc aatccgaacg
     1561 tcaccgcgcc tacgct
//
LOCUS       DATGBK010000919         1657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_10820, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000919 DATGBK010000000
VERSION     DATGBK010000919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10820"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1284)
                     /locus_tag="VKJ77_12855"
     CDS             complement(<1..1284)
                     /locus_tag="VKJ77_12855"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC46204.1"
                     /translation="MNQLSEPLAVALDLHQAGHMAEAERGYRAILKERPDHVDALHYL
                     GVLLHQRGDNEDAAKLLDGALGLAPDVSACWSNRGLVATALGDLPHAVACYERALAID
                     PAFSNARNNLGTALQKQGRFDESIEQHELLLAQDPDFIDARLNLGSTLASAKRHDEAL
                     AVYREALARDPGNFHAHFGEGNALRELKRFDEAVVSLRRALALKPDHFEANVNLGTTL
                     GLFGKFVEAEAQYRRALTLRDDPQIHVCVGAAIGSQGRFEEEEPHYRHALTLAPDHAD
                     ALHNLALLQLRRGNFKEGWALHEVRWRSSKYKPMNIPGVPEWRGESLQGKTLLVAGEQ
                     GHGDMIQFARYAPVLEQMGATVDMWVPENIVELIQSVRGVRRALRVGPTNEYDYWTPS
                     MSVPHRVAHLVPGIVADTPYMSVSAKRIGEWPARVK"
     gene            complement(1408..>1657)
                     /locus_tag="VKJ77_12860"
     CDS             complement(1408..>1657)
                     /locus_tag="VKJ77_12860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009906892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HMC46205.1"
                     /translation="WPIYASQQTLYVDPDYQYTILGYPGKKLAWIFARSPDISDAKYH
                     ELLGRLDEMGYDTSRLRRVPQTPEQIGKPGFHSPGDKD"
BASE COUNT          313 a          520 c          482 g          342 t
ORIGIN      
        1 cttgacgcgc gccggccact cgccgatccg cttcgcgctt acgctcatat agggcgtgtc
       61 cgcgacgatg ccaggaacga gatgagccac gcgatgcggc acgctcatcg acggcgtcca
      121 gtagtcgtat tcgttcgtcg gaccaacgcg cagcgcccga cgcacgccgc gcacgctctg
      181 gatcagttcc acgatgttct ccggcaccca catatcgacg gtcgcgccca tttgctcaag
      241 caccggcgca tagcgcgcga actgaatcat gtcgccgtga ccttgctcgc cggcgaccag
      301 cagcgtcttt ccttgcagcg attccccgcg ccattccggc actccgggaa tgttcatcgg
      361 cttgtacttg ctcgagcgcc agcgcacttc atgcagcgcc cagccttcct tgaagttccc
      421 gcgccgcaat tgcagcaacg caagattgtg cagcgcgtcg gcatgatcgg gcgcgagtgt
      481 cagtgcgtgc cgatagtgcg gttcttcttc ctcaaaacgc ccttgcgagc ctatagccgc
      541 gcccacgcag acgtgaatct gcggatcatc gcgcaaagtc agcgcccggc gatactgcgc
      601 ctccgcctcc acgaacttcc caaaaaggcc gagcgtcgtg ccgagattca cgttcgcctc
      661 gaagtggtcc ggtttcaaag caagcgcccg gcgcaagctg acgaccgctt cgtcgaatcg
      721 tttcagttcg cgcagcgcgt tgccttcgcc gaaatgtgcg tggaagttgc ccgggtcccg
      781 tgcaagcgcc tcgcgatata ccgccaacgc ttcatcgtga cgcttcgcgg aagcgagcgt
      841 cgagccgagg ttcaaacggg cgtcgatgaa atcaggatct tgagcaagca acagctcgtg
      901 ctgttcgatc gactcgtcga agcggccttg cttttgcagc gctgtgccaa ggttgttgcg
      961 ggcgttggag aacgccggat cgatggcgag ggcgcgctcg tagcacgcca cagcatgggg
     1021 aagatcacct agcgccgtcg ccaccagccc gcgattgctc cagcacgcgg acacatcggg
     1081 ggcaaggcca agcgcaccat ccagcaactt cgccgcgtct tcgttgtcgc cgcgttgatg
     1141 cagcaacaca ccgaggtaat gcagtgcatc gacgtgatcg ggacgttctt tgagaatcgc
     1201 gcgataaccc ctttccgctt cggccatatg gcctgcctga tgaagatcta aagcaacagc
     1261 gagcggttcg gagagttgat tcatggcggg cgtattcatc gagtagataa cctctcgatg
     1321 ctaagcgctg ccttcccgtc cagctatcgg attcctccta tcccttgttt cgctggttga
     1381 ggttatgagt ttcgctgatc gggggcatca gtctttatcg ccgggggaat gaaagcctgg
     1441 cttgccgatt tgttccggcg tctgcggcac gcgacgcaag cgcgaggtgt cgtaacccat
     1501 ctcgtccagg cggcccagca gttcatgata tttcgcgtcg ctgatgtccg gcgaacgcgc
     1561 gaaaatccag gctaacttct tgccgggata accaaggatt gtgtactgat aatccggatc
     1621 gacataaagc gtttgctggc tcgcgtagat cggccag
//
LOCUS       DATGBK010000920         1963 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_196564, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000920 DATGBK010000000
VERSION     DATGBK010000920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196564"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..977)
                     /locus_tag="VKJ77_12865"
     CDS             complement(30..977)
                     /locus_tag="VKJ77_12865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HMC46206.1"
                     /translation="MPKSNEKLDLATRAAWLYYVAGNTQNEIAEKLQISRPVAQRLVA
                     FAVEKNLIRVRVDHRIADCLALAAKLSKRYGLSMCEVVPIDGDSPEQVDRKLAVAGAQ
                     VMERYLTDEKPLVISISTGRTLKAVVAQIGQLERPQHRLVSMVGAIAQDGSSNRYDVA
                     QHLSEKTGGKHFMLPAPLMADSRAEREQWCNHRLYRIVDALSGNADVAFIGIGNIGIN
                     CPLHEDGFITTTEVEEMMQAGAVAELLGLPIDAQGVRVESTTGERVTSLRLDAPPKRP
                     TIGFAGGLRKRDAVIAALQGKWLSGLVTDELCAQAALDA"
     gene            complement(1106..>1963)
                     /locus_tag="VKJ77_12870"
     CDS             complement(1106..>1963)
                     /locus_tag="VKJ77_12870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HMC46207.1"
                     /translation="EPSGTLLPALARELGLPNGVVVAAGGGDNAASAVGIGATEPGDG
                     FLSLGTSGVLCVVGDRFRPNPSSAVHAFCHAIPDRWHQMSVVLSAASCLRWVCKLTST
                     DEPTLLAEIAALDPAALEIAPLFLPYLSGERTPHNDPYAQGVFFGMTHATDRALLGYA
                     VLEGVTLALTDGLDALQAAGTEVHALSLLGGGARSKYWGQLLADALNTRTRTHGGGET
                     GAALGAARLGWLAAGGDPAVVLAKPPVKDEFIPNAERHAILRQRLKGFRELYQHVRPL
                     FDPARPRLA"
BASE COUNT          371 a          666 c          590 g          336 t
ORIGIN      
        1 tttaaaaaat taagcgatgt aaaacgcttt caagcgtcca gcgcggcctg tgcgcacaac
       61 tcatccgtca ccagcccgga cagccattta ccctgcaacg cggcaatcac cgcgtcacgt
      121 tttctcaagc cgcccgcgaa cccgatggtc ggccgcttcg gcggcgcgtc cagccgcaag
      181 ctggtcacgc gctcgcccgt ggtcgattcc acccgtacac cttgcgcgtc gatcggcaag
      241 ccgagcagct cagccaccgc gccggcctgc atcatctctt ccacttcggt ggtcgtgata
      301 aacccgtcct catgcagcgg gcaattgatc ccgatattgc cgatcccgat aaacgcgaca
      361 tcggcgttcc cggacagcgc atcgacaatc cgatacagcc ggtgattgca ccattgctcg
      421 cgctcggccc ggctgtcggc catcaacggc gcgggcaaca tgaaatgctt gccgccggtc
      481 ttctcggaga ggtgctgcgc gacgtcgtag cggttcgagg agccgtcctg ggcaatagcc
      541 cctaccatcg acaccaggcg atgctgcgga cgctccagtt gcccgatttg cgcgaccacg
      601 gccttgagcg tccgacctgt gctgatcgag atcaccagcg gtttttcatc ggtgagataa
      661 cgctccatca cttgcgcgcc cgcgaccgcc agtttgcgat ccacttgctc gggcgaatcg
      721 ccgtctatag gcacgacttc acacatcgac aagccgtatc gcttcgataa cttcgcggcc
      781 agcgcgaggc aatcggcaat ccggtggtcc acgcgtacgc ggatcaggtt cttttccact
      841 gcgaacgcga ccagccgctg ggcgacgggc cgcgagatct gcagtttctc cgcaatttca
      901 ttctgcgtat tgcccgcgac gtaatacagc cacgcggcgc gggtggcgag atcgagtttt
      961 tcgttggact tgggcacggt ggctcgatgt ctgggtcgtt cgtgtcgaat acaaagagca
     1021 tcgcgcgcca taaaggcacg cgaaagatcg acattgtgca cgctcggcgc ctgagggcaa
     1081 aaacccgccc ggcaccttta aaccatcacg cgagccgcgg acgcgccgga tcgaacaatg
     1141 ggcgcacgtg ctgatacaac tcgcgaaaac ccttcagccg ctgccgcaga attgcgtggc
     1201 gttccgcgtt cgggatgaac tcatccttca caggtggttt ggcaagcacc acggccggat
     1261 cgccgcccgc ggccagccag ccgagccgcg ccgcgccgag cgccgcgcca gtctcgccgc
     1321 cgccgtgcgt gcgcgtgcgg gtgttgaggg catcggctag taactggccc cagtacttgc
     1381 tgcgtgcacc accacccaac aacgacagcg cgtgcacttc cgtgccggcg gcttgcaacg
     1441 cgtcgaggcc atcggtcaac gcgagcgtca cgccttcgag caccgcataa ccgagcaacg
     1501 cgcggtcggt tgcgtgggtc atgccgaaga acacgccttg cgcgtacggg tcgttatgcg
     1561 gcgtacgctc gccgctgaga tacggcagga agagcggcgc gatctcgagc gcagcgggat
     1621 cgagcgcggc gatttcagca agcagcgtgg gttcatccgt ggacgtgagc ttgcagaccc
     1681 agcgcaggca gctcgcggcc gacaacacca cgctcatctg atgccagcga tcgggaatgg
     1741 cgtgacagaa cgcatgcacc gccgacgatg gattcggccg gaagcggtcg ccgaccacgc
     1801 acagcacgcc cgacgtgccc agcgacagaa aaccatcgcc cggttccgtt gcgccgatac
     1861 ccacggcgct tgccgcgttg tcaccgccac cggccgcgac gaccacgcca ttgggcaatc
     1921 caagttcgcg ggcgagcgcg ggcagcagcg tgcccgacgg ctc
//
LOCUS       DATGBK010000921         2225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_103489, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000921 DATGBK010000000
VERSION     DATGBK010000921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103489"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1170)
                     /locus_tag="VKJ77_12875"
     CDS             complement(<1..1170)
                     /locus_tag="VKJ77_12875"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC46208.1"
                     /translation="MDPWDVIVIGSGAAGLVAAWHARAAGANVLVVNKSLVGRSGATI
                     TSGGGVSVSGRTAIDLGFDANPDDTDEIFFSDTIRSGSFLSDQRLVAAMVEGVGDELR
                     RLIADGAKVSAPKHAPGHSSGRGVRIPGPSMQRVVTTAALHAGVRFREDFQSTDLLTS
                     DGAVIGVAGLDRRTGVVEALHGRAIVIATGGATSNWSLRTAPEELSGDGHAMALAAGA
                     DLIEMEMLQFLPCCLVAPDMWRGLQFPWILGPQSGVRAWLLNRYGERFMARWDPERME
                     LATRDVVAAASAAEVFEGRGSPNGGVYLSWAHLPRDIVDNFTQWSRSFSTDWRWEGFD
                     MTPLVERIRAGYAIEVAPAAHFSLGGIRVDVDGSTGVPHLYACGEATGGVHGGNRL"
     gene            1396..>2225
                     /locus_tag="VKJ77_12880"
     CDS             1396..>2225
                     /locus_tag="VKJ77_12880"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019043353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC46209.1"
                     /translation="MTYETTSPADIPGSPLAKAFEQPLMLGVFLDLQDIKRSTLPRTS
                     TWTFDYNAEVVRKADALGFELAFSRTQWLPKGGYDGEASLDAFVALGAMAAITKNILL
                     ISTIHVLYGPIHPLHLAKYGATLDHISKGRWGINIVTGHRAVEHEMFGWDRIELDTRY
                     ELASELFDVVQRLWTDTENFSFEGKSPWKVHNGYITPKPQFGRPVLVNATGSEAGIAF
                     AAKYSDIVFITSPGGAHIDSALETLPAHIANIKAQAARVGRTVRTVINPVIVSRDTER
                     "
BASE COUNT          444 a          756 c          646 g          379 t
ORIGIN      
        1 cagacgattg ccaccgtgca cgccgccggt ggcctcgccg cacgcgtaca ggtgtggcac
       61 gccggttgag ccatccacat cgacacggat cccgccgagc gagaaatgcg ctgcgggcgc
      121 aacttcaatc gcatagccgg cgcgaatgcg ttcgacaagc ggtgtcatgt cgaaaccttc
      181 ccaacgccag tctgtggaaa atgagcgaga ccactgcgtg aagttatcga ctatgtcgcg
      241 cggcagatgc gcccatgaca gatacacgcc gccgttcgga ctgccgcggc cctcgaacac
      301 ctcggcggcg cttgccgcag cgacgacatc gcgcgtggca agttccatgc gctcgggatc
      361 ccagcgcgcc atgaagcgct cgccatagcg gttgagcagc cacgcgcgca cgccgctctg
      421 cggcccaagg atccaaggga attgcaagcc gcgccacatg tcaggggcaa cgaggcagca
      481 tggaaggaac tgcagcatct ccatctcgat caagtcggca cccgctgcaa gcgccatggc
      541 atggccgtcg cccgacaact cctcgggcgc agtgcgcaag ctccagttgg aggtggcgcc
      601 accggttgcg atcacgatcg cgcgtccgtg cagcgcttcg accacaccgg tgcgccggtc
      661 gagacctgcc acgccaatca cggcgccgtc gctcgtaagg agatcggtcg actgaaagtc
      721 ctcccgaaag cgcacgcctg cgtgcaatgc ggccgtggtg accacacgct gcatcgacgg
      781 tccaggaata cgcacaccgc ggccgctact gtgtcccggt gcatgcttgg gagcactgac
      841 cttcgcaccg tccgcaatca gtcggcgcag ttcgtccccc acaccctcca ccatcgccgc
      901 cacgagcctc tggtcgctca ggaaagaacc ggagcggatg gtgtcggaga aaaagatttc
      961 atcggtatcg tcggggttgg cgtcgaagcc aagatcgatg gccgtgcgcc cggacacgga
     1021 cacaccgcct cccgacgtga tggtcgcgcc gctgcgtccc accaggctct tgttcaccac
     1081 gagcacgttc gctcctgccg cgcgcgcatg ccaggcggcg accagccctg ccgcgccgct
     1141 accaatcacg atgacgtccc aaggatccat gccgtgcttc ccgctgtgct gagtcttgcc
     1201 ggttcaaacg ccggccgcgg acagtagagc acttcgcgaa gttcaagcaa agcaagcatt
     1261 ccagatatct aaatcacggg caaagcggac cgcgttcata accaatccgc ttaatcttcg
     1321 ttggctgcgt gctgcacggg agccacacta tccgcctatc ccgcacaaca cgctggcggc
     1381 cttgccgcgt ccaccatgac ctacgaaacg acctctcctg ccgacattcc cggcagtccg
     1441 ctcgcgaagg cctttgagca accgctaatg ctgggtgtct ttcttgactt gcaggatatc
     1501 aagcgctcaa cgctgccccg cacttccacc tggaccttcg actacaacgc ggaggtggtg
     1561 cgcaaagccg atgcacttgg cttcgaactt gcattcagcc gtacgcaatg gctgccaaaa
     1621 ggcggctatg acggcgaagc ttcgctcgat gcattcgttg cgctcggcgc catggccgcg
     1681 atcaccaaga acatcctgct gatctcgacc atccacgtgc tgtacggccc gatccatccg
     1741 ctgcatctgg cgaagtacgg cgccacgctc gatcacatct ccaagggccg gtggggcatc
     1801 aacattgtca ccgggcaccg tgccgtcgag cacgagatgt tcggctggga tcgcattgaa
     1861 ctcgacactc gctatgagct cgccagcgaa ctgttcgatg tcgtccagcg gttgtggacc
     1921 gataccgaga acttctcgtt cgagggcaag tcgccctgga aagtacacaa cggctacatc
     1981 acgccgaaac cgcagttcgg acgtccggtg ctggtgaacg cgaccggctc cgaagcgggc
     2041 atcgcgttcg ccgcgaagta ttcggacatc gtgttcatca caagcccagg cggtgcgcat
     2101 atcgacagtg cgctggagac gctgcccgcg catattgcca acatcaaggc gcaggccgca
     2161 cgcgtgggcc gcaccgtgcg caccgtgatc aatcctgtca tcgtcagccg ggacaccgag
     2221 cgcga
//
LOCUS       DATGBK010000922         2222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_312026, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000922 DATGBK010000000
VERSION     DATGBK010000922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312026"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2222)
                     /gene="putA"
                     /locus_tag="VKJ77_12885"
     CDS             complement(<1..>2222)
                     /gene="putA"
                     /locus_tag="VKJ77_12885"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018418843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0004657 - proline dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0010133 - proline catabolic process to
                     glutamate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HMC46210.1"
                     /translation="GSRGIYEGPGISIKLSALHPRYSRSQQERTMTELLPRVKALALL
                     ARRYDIGLNIDAEEADRLEISLDLLEALCFDPELAGWNGIGFVVQAYQKRCPFVIDYL
                     IDLARRSRHRIMVRLVKGAYWDSEIKRAQVDGLEGYPVYTRKIYTDISYVACAKKLLA
                     APDAVYPQFATHNAFTLSAIYHLAGGNYYPGQYEFQCLHGMGEPLYEEVTGRDKLNRP
                     CRVYAPVGTHETLLAYLVRRLLENGANTSFVNRIADKAIPVSELVQDPIDEASKLTPL
                     GLPHAKIALPRQLFGSERLNSMGFDLSNEHRLASLSSALLASANHPWRAAPMLEAADV
                     VEGVARDVRNPADLRDLVGTVIEATSEQVALALSNAVAAAPIWQSTPVDERADCLARA
                     ADLLEAQMHTLMGLVVREAGKSLANAVSEIREAIDFLRYYSAQIRSEFSNDTHRPLGP
                     VVCISPWNFPLAIFIGQVAAALAAGNTVLAKPAEQTPLIAAQAVRILREAGVPPGAVQ
                     LLPGNGETVGAALVADPRTRAVMFTGSTEVARLINKTLSERLDPDGRPIPLIAETGGQ
                     NSMIVDSSALAEQVVADVLQSSFDSAGQRCSALRVLCLQDDVAYRTLEMLTGAMRQLA
                     MGNPDRLSTDVGPVIDAEAKQSIEAHIASMREKGRNVVQLPMPDGCAQGTFVPPTLIE
                     LDSIDELKREVFGPVLHVVRYRRAHLDKLLDQIKATGYGLTLGIHTRIDETIAHVVSR
                     A"
BASE COUNT          452 a          695 c          670 g          405 t
ORIGIN      
        1 gcccggctca ccacgtgcgc gatggtttca tcgatacgcg tatggatccc cagcgtcagc
       61 ccgtaccccg tcgccttaat ttggtcgagc agtttatcaa gatgtgcccg gcgataccgc
      121 actacgtgaa gtaccggacc gaagacctcg cgcttcaact catcgatgga atcaagttcg
      181 atcagcgtcg gcgggacgaa agtgccttgt gcgcagccat cgggcatagg caactgcacg
      241 acgttgcggc ctttctcgcg catcgatgca atatgcgcct cgatgctctg cttcgcttcg
      301 gcatcgatca ccgggccgac atcggtggaa aggcgatcgg ggttccccat cgcgagttgc
      361 cgcatggcgc cggtgagcat ttcaagcgtg cgatacgcga cgtcgtcctg caggcacagc
      421 acgcgcagtg ccgaacagcg ttgaccggcg gaatcgaagg acgattgcag cacgtccgcg
      481 accacttgct cggccagcgc cgacgaatcg acgatcatcg agttctgtcc gcccgtctcc
      541 gcgatcagcg gaatcggccg gccatccggg tcgaggcgtt cggacaaggt cttgttgatc
      601 aggcgcgcga cttccgtcga accggtgaac atcacagcac gtgtgcgagg atcggcgact
      661 aacgcggcac ccacggtttc accattgccc ggcagcagtt gcaccgctcc cggcggcaca
      721 ccggcttcgc gcagaatgcg cacggcttgc gcggcgatca gcggcgtctg ttcggccggc
      781 ttcgcgagca ccgtattgcc cgcagcgagc gcggccgcaa cttgtccaat gaagatcgca
      841 agcgggaagt tccatgggct gatgcaaacc acggggccga gtggacgatg cgtatcgttg
      901 gaaaactcac tgcggatctg cgccgagtaa taacgcagga aatcgatagc ctcacgaatc
      961 tccgacaccg cattcgccaa cgatttaccc gcttcgcgca cgacgagacc catcaacgta
     1021 tgcatctgcg cttcgagcag atcggctgcg cgggcgaggc aatcggcgcg ttcatcgacg
     1081 ggcgtcgatt gccagatcgg cgcggcggcg acggcgttac tcagagcaag tgcaacttgc
     1141 tcggatgttg cttcaatcac ggttcccacg aggtcgcgca agtcggcggg gttgcgaaca
     1201 tcgcgcgcaa cgccttccac tacgtcagcg gcctcaagca tcggagccgc gcgccaagga
     1261 tgattcgcgc tcgcaagcaa tgccgacgac aacgacgcca gccgatgctc attcgacaga
     1321 tcgaagccca tcgaattgag gcgctcgctg ccgaacaact gacgcggcag cgcgatcttc
     1381 gcatgaggca gaccgagcgg cgtgagcttg gacgcttcgt cgatagggtc ctgcacgagc
     1441 tcgctgaccg gaatcgcttt atcggcgatg cgattcacga acgacgtatt cgcgccgttc
     1501 tcgagcaagc gccgcacgag atacgcgagc agcgtttcgt gcgtaccaac cggcgcatac
     1561 acgcgacacg gccggttgag cttgtcgcgc ccggtgactt cttcgtacag cggttcgccc
     1621 atgccgtgca ggcactggaa ctcgtactga ccggggtaat aattcccccc ggcgagatga
     1681 tagatagccg acagcgtgaa cgcgttgtgc gtggcgaatt gcggatacac ggcatcgggc
     1741 gcagcgagca gttttttcgc gcaagcgacg tacgagatgt ccgtgtagat cttgcgcgta
     1801 tagaccggat agccttcgag gccatcaact tgcgcgcgct tgatttccga atcccagtaa
     1861 gcgcccttaa ccagccgaac catgatccga tgacggctgc gacgcgcgag atcgatcaag
     1921 taatcgatca cgaacgggca acgcttctga taagcctgca ccacgaaacc gatgccattc
     1981 cagccggcca gttcgggatc aaagcacagc gcttctagca gatcgagcga aatttccagc
     2041 cggtcggctt cttccgcatc gatgttcagg ccgatgtcgt aacggcgcgc gagcagcgcc
     2101 agcgctttca cgcgcggcag caactcggtc atcgtgcgtt cctgctgcga gcgcgagtag
     2161 cgcggatgca gcgcggacag cttgatggaa atccccgggc cttcataaat gccgcgcgat
     2221 cc
//
LOCUS       DATGBK010000923         3401 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_80421, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000923 DATGBK010000000
VERSION     DATGBK010000923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3401
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80421"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..744
                     /locus_tag="VKJ77_12890"
     CDS             <1..744
                     /locus_tag="VKJ77_12890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase family protein"
                     /protein_id="HMC46211.1"
                     /translation="TLDRPERKNPLTFESYAELRDLFRQLVYATDVKSIVIHGAGGNF
                     CSGGDVHDIIAPLVDLPMPELLMFTRMTGDLVKAMRHCPQPIVAAVDGICAGAGAILA
                     MASDMRLGTARSKLAFLFTRVGLAGCDMGACAILPRIIGQGRAAELLFTGRSASGDEG
                     FAWGFYNRLCEPDDVLREAQSLASDLASGPTFAHGITKKMLHQEWSMSIDDAIESEAQ
                     AQAICMATNDFGRAYRAFAAKTRPVFEGD"
     gene            746..1951
                     /locus_tag="VKJ77_12895"
     CDS             746..1951
                     /locus_tag="VKJ77_12895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC46212.1"
                     /translation="MANPQTTSDAFHEALAWPFFEARHRELGVRIDTWAAEHLGDTHA
                     NHANVDAICRRLVRELGKAGWLRYGIGGTAYGGHGDTIDTRAVCLLRETLARHSGLAD
                     FVLAMQGLGSGAISLGGNEAQKQRYLPRVASGEAIAAFALTEPDAGSDVAALALSARE
                     DGDSYVLDGEKTWISNGGIADFYVVFARTGEAAGARGISAFIVDADTAGLRIAERLDV
                     IAPHPLARLSFENARVPRTALLGNRGEGFKLAMRTLDIFRTSVAAASLGFARRAMCEG
                     IERAASRKMFGQTLGDFQLTQAKLAQMALTIDSSALLVYRAAWLRDQGKSVTREAALA
                     KWHASEGAQQVIDAAVQLWGGSGVQSGAVVEQLYREIRALRIYEGATEVQQLIVGRDL
                     LKAHAARNA"
     gene            1948..2427
                     /locus_tag="VKJ77_12900"
     CDS             1948..2427
                     /locus_tag="VKJ77_12900"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HMC46213.1"
                     /translation="MTEPSTHFERPVRIRFSHCDPAGIVFFPQYLVMTNALVEDWFNE
                     ALDIDYAAMISKRRVGLPIVKLDCTFSKPSQMGDTLMLSLTLDRIGARSVGIVIDAQS
                     HGETRFLARQVLVTTSLESGVSIDIPEDIRAALTRFNPAALAEVKVEVKHEVKETRS"
     gene            2424..2819
                     /locus_tag="VKJ77_12905"
     CDS             2424..2819
                     /locus_tag="VKJ77_12905"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC46214.1"
                     /translation="MKKALLPAGWAKPRGYANGVAARGTQVFIAGQIGWDAQERFQSS
                     EFAAQAHQALANIVAVLDAAGGRPEHLVRLTWYVTDKREYLAALRDVGSAFRELIGNY
                     DIAMSAVQVAALIEDEAKVEIEATAVIPD"
     gene            2881..>3401
                     /locus_tag="VKJ77_12910"
     CDS             2881..>3401
                     /locus_tag="VKJ77_12910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC46215.1"
                     /translation="MEPSAHVDTFSRDNLPPPGEWPQFLLDNPDVSYPARLNCAVELL
                     DRIIDDHPERAQGARPAIWSDVDGAPHATTYSELRTRVNQAAHVLTGVMGLVPGKRIL
                     LRGPNTLHMAIAWLASLKAGLVVVPTMPLLRAKELKQIIDKAQVSAALCDARLVDELA
                     QCSDPANPHFCESL"
BASE COUNT          650 a          994 c         1090 g          667 t
ORIGIN      
        1 acccttgacc ggcccgagcg caagaatccg ctgacgttcg aatcgtacgc ggagttgcgc
       61 gacctgttcc gtcagctcgt ttacgcgacc gatgtaaaga gcatcgtgat ccacggcgcc
      121 ggaggcaact tctgctcggg cggcgacgtg cacgacatca tcgcgccgct cgtcgacttg
      181 cccatgcccg agttgctcat gttcacgcgc atgacgggag acctcgtcaa agcgatgcgt
      241 cattgcccgc aaccgattgt tgcagcggtc gatggtatct gcgccggagc gggcgcgatc
      301 ctggcgatgg cttcggatat gcggctaggg acggcgcgaa gcaagctcgc gtttctgttc
      361 acccgtgtgg gactggcggg ttgcgacatg ggcgcatgtg cgatcctgcc gcgcatcatc
      421 ggtcagggaa gagcggccga actgcttttc accggacgtt ccgccagtgg cgacgagggt
      481 ttcgcgtggg gcttctataa ccgcctatgc gagcccgacg acgttttacg cgaagcgcaa
      541 tcactcgcct ctgacctcgc gtcgggaccg accttcgcgc atggcatcac gaagaaaatg
      601 ctgcatcagg agtggagcat gagcatcgac gacgccatcg aatccgaagc gcaggcgcag
      661 gcaatctgca tggcgaccaa cgatttcggc cgcgcgtatc gcgccttcgc tgcgaagacg
      721 cggcccgtgt tcgagggaga ttgagttggc caatcctcaa acaacttccg acgctttcca
      781 cgaagccctc gcatggccgt tcttcgaggc aaggcatcgc gaactcgggg tgcgtatcga
      841 cacatgggca gcggaacacc tgggcgatac gcatgccaat catgcgaacg tcgatgcgat
      901 ctgccgccgc ctcgtacgtg aactcggtaa ggcggggtgg ctgcgttatg gcataggcgg
      961 cacggcttat ggcgggcacg gcgacaccat cgacacgcgc gccgtttgcc tgctgcgcga
     1021 aacgcttgct cgtcacagcg gtctcgctga cttcgtgctt gcgatgcagg gactcggatc
     1081 aggcgcgatt tcgcttggcg gcaacgaagc gcaaaagcag cgttatctgc cgcgggtggc
     1141 gagcggcgag gcaatcgcgg cgtttgcatt gactgaaccc gatgcaggct cggatgtcgc
     1201 ggcgctcgcg ctcagcgctc gtgaagacgg cgattcatac gtgctcgatg gcgagaagac
     1261 ctggatctcg aacggcggca tcgcggactt ttacgtggtg tttgcacgta ccggcgaggc
     1321 agcgggggcg cgtggcatca gcgcgtttat cgtcgatgcg gataccgcgg gactgcgaat
     1381 tgccgaacgg ctcgatgtga ttgcgccgca tccgctagcg cgcctttcat tcgagaacgc
     1441 acgcgtgcca cgtaccgctt tactcggcaa tcgcggcgaa ggtttcaagc tcgctatgcg
     1501 tacgctcgat atctttcgca cgtcggttgc ggccgcgtcg cttggtttcg cgcggcgagc
     1561 catgtgcgaa gggatcgagc gcgctgcatc gcgcaagatg ttcggccaga cgctgggcga
     1621 cttccaactg acacaagcaa agctcgcgca aatggcgctc accatcgaca gctccgcgtt
     1681 gctcgtctat cgggcggctt ggttgcgcga tcagggcaag tctgtcacgc gcgaggctgc
     1741 actagcgaag tggcatgcaa gcgagggcgc tcagcaagtt attgatgcag cggtgcaatt
     1801 gtggggtggt agcggtgtgc aaagcggtgc ggtggtcgag caactgtatc gggagattcg
     1861 cgcgctgcgc atctatgaag gtgcaaccga agtgcagcag ttgattgtag gacgcgatct
     1921 gctcaaggct catgccgcga ggaacgcatg acggaaccat cgacccattt cgagcgtccg
     1981 gtgcgcattc gtttttcgca ttgcgatccc gccggcatcg tattttttcc gcaatatctc
     2041 gtgatgacca atgcgcttgt agaggactgg ttcaacgaag cactcgacat tgactacgcc
     2101 gcgatgatca gcaagcgccg cgtcggcttg ccgatcgtga agctcgattg cacgttttca
     2161 aagccgagcc agatgggcga cacgctcatg ctgtcgctga cgcttgatcg gataggtgct
     2221 cgttcggttg gcatcgtaat tgacgcacag tcgcacggcg aaacgcgctt tcttgcgcgt
     2281 caggtactcg tgacaacgtc gcttgaatct ggggtgtcga tcgatatccc tgaggacatc
     2341 cgcgccgcgc tgactcgctt taatcccgcg gcgcttgccg aagtaaaggt cgaagtaaag
     2401 cacgaagtaa aggagacacg gtcgtgaaaa aagcattgct cccagccggc tgggccaagc
     2461 cgcgcggata cgcgaacggc gtggccgcgc gtggcacgca ggtcttcata gcaggacaga
     2521 ttggttggga cgcgcaagag cgcttccaga gcagcgaatt cgccgcgcag gcgcaccagg
     2581 cgctggccaa catagtcgcg gtgctagacg ctgcgggagg gcgcccggag catctcgtgc
     2641 ggctgacgtg gtacgtgacc gacaagcgtg aatatctcgc cgcgttgaga gacgtgggca
     2701 gcgcgtttcg agagctgatt ggcaactacg acattgcgat gagcgccgtg caggtggccg
     2761 cgctcatcga agacgaagcc aaggtggaga tcgaagccac cgccgttatt ccggattagc
     2821 aaccgtcgtt tatcccgtcg cttgtctcgt cgcatatttt cgttgttctc ggagctcacc
     2881 atggaacctt cggctcacgt cgatacgttt tcccgcgaca acttgccgcc gcccggcgag
     2941 tggccgcagt ttctgctcga caaccccgac gtctcctatc cggcgcgcct gaattgcgcg
     3001 gtcgaattac tcgaccggat aatcgatgac catccagaac gtgcgcaggg agcaaggccc
     3061 gcgatctggt cggacgtcga tggtgctccg cacgcgacca cgtacagcga attgcgcacg
     3121 cgcgtgaacc aggcagcgca tgtgctgacc ggggtgatgg ggctggtgcc gggcaagcgc
     3181 atcttgctgc gtgggccgaa cacgttgcac atggcaatcg catggcttgc gtcgttgaag
     3241 gcggggctcg tggtggtgcc gaccatgccg cttctacgcg ccaaggagct gaagcagatt
     3301 atcgataagg ctcaggtctc agcggcccta tgcgacgcgc gactagtcga tgaactcgcg
     3361 caatgcagcg accccgccaa ccctcacttt tgcgaaagcc t
//
LOCUS       DATGBK010000924         1616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_219477, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000924 DATGBK010000000
VERSION     DATGBK010000924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219477"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VKJ77_12915"
     CDS             <1..318
                     /locus_tag="VKJ77_12915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HMC46216.1"
                     /translation="ASMLTGSIGMLPSASLGAGRRGLYEPVHGCAPDIAGLDVANPLA
                     SILSTAMMLRMSCERDDLAQRVERAVRRVLASGYRTADIAERDTRKVGTTQMGDLVVA
                     ALS"
     gene            352..1479
                     /locus_tag="VKJ77_12920"
     CDS             352..1479
                     /locus_tag="VKJ77_12920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011001672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46217.1"
                     /translation="MIATTHTATNSLAAPRPLVRFRGVGKTYDGVTQIVDDLDLDIFE
                     GEFLTLLGPSGSGKTTTLMMLAGFESPTSGEIWLGDALINAMPPHKRNIGVVFQNYAL
                     FPHMSVAQNVAYPLTVRRMPADEKAAAVKRALEMVRMAEFAGRAPARLSGGQQQRVAL
                     ARALVFNPKLVLMDEPLGALDKRLREHMQIELKELHRELGITFVYVTHDQSEALTMSD
                     RVAVFDSGRIQQLDRVDSLYERPDNGIVANFVGDNNVFTGKVVRLDGDYCEIDLPGGE
                     RLRGRSSGSLKLDDAAQGCARPERISVLAMAHEDHFENLLRVRASDAIYFGDHMRLRF
                     KLDGHAPFFVKVALDDPVITSFAPGSDMLLGFSAEHFRIFP"
BASE COUNT          285 a          509 c          497 g          325 t
ORIGIN      
        1 gcgtcgatgc tgaccggttc catcggcatg ctgccgtctg cgtcgctcgg cgccgggcgc
       61 cgtggcctgt atgagccggt gcatggctgc gcgcctgata tcgccgggct ggacgttgcc
      121 aacccgcttg cgtctatcct ctcgactgcc atgatgctgc gcatgagctg cgagcgcgat
      181 gacctcgcgc aacgcgtgga gcgcgcggtg cggcgagtgc ttgcatcggg ttatcggaca
      241 gcggatatcg ccgaacgcga tacccgcaag gtcggcacca cacagatggg cgacctcgtg
      301 gtcgcggccc tctcctgagg cttatgccat gactcaatcc ggaggtgccc agtgattgcc
      361 acaacgcaca ccgcaacgaa ctcccttgca gcaccacgtc ccctcgtgcg ctttcgaggc
      421 gtcggcaaga cctacgacgg cgtcacgcag atcgtcgacg atctcgacct ggacattttc
      481 gagggtgagt tcctgacgct gctcggccct tccggctccg gcaagacgac cactctgatg
      541 atgctcgccg gtttcgaatc gccgacgagc ggcgagatct ggctcggcga cgcgttgata
      601 aacgcaatgc ccccgcacaa gcgcaacatc ggcgtggttt tccagaacta cgcgctgttc
      661 ccgcatatgt cggtggcaca aaacgttgcg tatccgctaa ccgtgcgccg catgccggcc
      721 gatgaaaaag ccgccgccgt gaaacgggcg ctggagatgg tccgcatggc ggagtttgcc
      781 ggccgtgcgc ctgcgcgtct atccggtggt cagcagcagc gcgtggcgct ggcacgtgca
      841 ctcgttttca acccgaagct cgtgctgatg gacgagccgc ttggcgcgct cgacaagcgc
      901 ttgcgcgagc acatgcagat tgaactgaag gagctgcacc gcgagctggg cattaccttc
      961 gtttatgtca cgcacgatca gagcgaagcg ctgaccatgt cggaccgcgt cgccgtgttc
     1021 gactcgggac gcattcagca actcgatcgc gtcgactcgt tatatgagcg gccggataac
     1081 ggtatcgtgg cgaattttgt cggcgacaac aacgtgttca ccggcaaggt cgtacggctc
     1141 gacggcgatt attgcgagat cgacttgccg ggtggcgagc ggttgcgcgg acggtcgtca
     1201 ggttcattaa agctcgacga cgccgcgcag gggtgcgcgc ggccggagcg catcagcgtg
     1261 ctcgccatgg ctcatgaaga ccacttcgaa aacctgctgc gcgtgcgcgc cagcgatgcc
     1321 atctattttg gcgaccacat gcgcctgcgt ttcaagcttg atggacacgc gcccttcttc
     1381 gtgaaggtcg cgctcgatga ccccgtgatc acgtcctttg ctccgggcag cgacatgcta
     1441 cttggatttt ctgcggagca cttccgcatt ttcccctgac tgccccaacc accttccacc
     1501 gttccaggag tattcacatg tcgttcaatt gcaagctgac cgctacgtgc gcagcgatga
     1561 tcatgacgtc cggtgcgtgg gccgcgcagc tcacggtcat taattacggt ggtgca
//
LOCUS       DATGBK010000925         1581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_149475, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000925 DATGBK010000000
VERSION     DATGBK010000925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149475"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /locus_tag="VKJ77_12925"
     CDS             complement(<1..383)
                     /locus_tag="VKJ77_12925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46218.1"
                     /translation="MSAIEIRNVKKRYKELQALKGVNLVVEEGEFFGLLGPNGAGKTT
                     LISILAGLARADSGAISVLGHDVVTDFRQARRSLGVVPQELVFDPFFTVRESLRIQSG
                     YFGLRKNDDWIDEIMANLDLTEKADV"
     gene            complement(604..873)
                     /locus_tag="VKJ77_12930"
     CDS             complement(604..873)
                     /locus_tag="VKJ77_12930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HMC46219.1"
                     /translation="MSRFETAATLTHESARSALDAGLSRIAAGATEVDCASLKQFDSS
                     ALAVLLAWQRAAAARGAALTVVNLPSGLASLAQAYGVDTLLTFRH"
     gene            complement(870..1499)
                     /locus_tag="VKJ77_12935"
     CDS             complement(870..1499)
                     /locus_tag="VKJ77_12935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46220.1"
                     /translation="MKKLFLLPLFAVLMAFCSGAFAQSGDMSTPDGLVKTVTSQVLDQ
                     IKADKQIQSGNITRITQLVNEKILPYTDFTRTTRLVMGRNWNTASPQQQKDIVEQFKM
                     LLIRTYSGALAQVRDQQVQYKPFRADPSDTDVVVRSVVLNNGSPIELDYRLYKTPEGW
                     KVYDINVLGAWLIQAYQQQFNEQIQQHGVDGLVQFLTQRNQQLASGKAS"
BASE COUNT          315 a          462 c          485 g          319 t
ORIGIN      
        1 acatcggctt tctcggtgag atcgagattg gccatgattt cgtctatcca gtcgtcgttc
       61 ttgcgcaggc cgaaatagcc cgactggatg cgcaacgact cgcggacggt gaaaaacgga
      121 tcgaagacga gctcctgcgg caccacgccc agcgagcggc gcgcttggcg gaagtccgtg
      181 accacgtcgt ggccgagcac ggagatggct ccgctatcgg cgcgagccag gcccgcgagg
      241 atgctgatga gggtagtttt accggcacca ttggggccga gcaggccgaa aaactcgcct
      301 tcttcgacga cgaggttcac gcctttgagc gcttgcagct ctttgtagcg cttcttgacg
      361 ttgcgtattt ctatggctga catgactgtg cgcgcgccgg cggggctgcg cctcgatgtg
      421 tgcggatcgg aaccagaacc ggcctttaca aaaatgaaag gcggatagca ggccgaaaaa
      481 acggttgatt ataggccaaa cggggtggag gttcgccgac aagcgagtcc agaacaaccc
      541 tgcaaaccct gcaaggcgcg ttcgatcgat atcgaaacgc gccggtgatt cagcaggaca
      601 ggatcaatgt cggaaggtga ggagcgtatc tacgccatag gcttgcgcga gactggcaag
      661 cccggaggga aggttgacga ccgtgagcgc cgcgccgcgt gccgctgccg cgcgttgcca
      721 cgcgagcagc acggcgagcg ccgacgaatc gaattgcttg agcgacgcgc aatccacttc
      781 ggtcgcgccc gcggcgatcc gcgacaaacc cgcgtcgagc gcgcttctcg cgctctcgtg
      841 cgtgagcgtc gcggcggttt cgaagcgact cacgatgcct tgccgcttgc cagttgctgg
      901 ttacgctgcg tgaggaactg caccagcccg tccacgccgt gctgctggat ctgctcgttg
      961 aactgctgct ggtaagcctg gatcagccac gcgcccagca cgttgatgtc atagaccttc
     1021 cagccctccg gcgtcttgta cagacggtag tcgagctcga tcggcgaacc gttgttcagc
     1081 accaccgagc gcaccaccac gtctgtatca ctaggatctg cgcggaacgg cttgtactgg
     1141 acttgttgat cgcgaacctg tgccagcgca cccgaatacg tgcggatcag cagcatcttg
     1201 aattgctcga cgatgtcttt ctgctgttgc ggcgaggccg tattccagtt gcgccccatg
     1261 acgagacgcg tggtccgcgt gaagtccgtg tacggcagga tcttctcgtt caccaactgc
     1321 gtgatgcgcg tgatgttgcc tgactggatc tgcttgtcgg ccttgatctg gtcgagcact
     1381 tgcgacgtga ccgtcttgac caggccgtcc ggggtggaca tgtctccaga ttgcgcgaac
     1441 gcaccgctgc aaaacgccat caacacagca aacaggggaa gtagaaatag ttttttcatt
     1501 acggactctg caaaaaaaag tggcctgagt ttgagcgtgg tgttcagcac gagttcatct
     1561 cccacgctca ttcagccatc g
//
LOCUS       DATGBK010000926         2120 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_10912, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000926 DATGBK010000000
VERSION     DATGBK010000926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10912"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..259)
                     /locus_tag="VKJ77_12940"
     CDS             complement(<1..259)
                     /locus_tag="VKJ77_12940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HMC46221.1"
                     /translation="MAQKLFHAQPFPLTFDSKTTAFVMIDMQRDFVEPGGFGEALGND
                     VSLVRSAIVPCGKVLKAARDAKLLVIHTREGHRADLADCPPA"
     gene            810..>2120
                     /gene="flhF"
                     /locus_tag="VKJ77_12945"
     CDS             810..>2120
                     /gene="flhF"
                     /locus_tag="VKJ77_12945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HMC46222.1"
                     /translation="MNIRKFIGATSREAFRLVREALGPDAVVLSNRVTEDGSVEIVAV
                     ADGDLAKISPKAAAQHREMKLRESAGNPSHAQSHAPSHLLPHTPSHLNSNSGSNAYAS
                     GDVFSSVFGANPEPLDDMEPEAQADDTSRTMAESNPWLIEHARRVAQSAADSAPQRTL
                     SASAAIAKGLGSPVTVTPQDSAQAHGWTREAAQAAARRAEQKTAQLLAATQPQTQTPA
                     AQTASSMQEGAFAGLPASAAAAVTEAIRTRMEQVVNDTVMNELSSMRGMMEEHFAGLL
                     WGDRQRRSPNQAALTKRLFAAGFSAQLVRLMIDNMPEIEHAEESMQWVQQVLENNLPV
                     MDSEESMMDRGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGAHE
                     QLRIFGKILGVSVHAVKDASDLQLALSELRNKHIVLIDTIGMSQR"
BASE COUNT          477 a          654 c          586 g          403 t
ORIGIN      
        1 tcgccggcgg gcaatcggcc aggtcggcgc ggtggccttc acgcgtatgg atgaccagca
       61 gcttcgcgtc acgcgcagcc ttcagcactt tcccgcacgg gacaatcgcg ctgcgcacca
      121 gggagacgtc atttcccaat gcttcgccaa agcctcccgg ttcaacgaaa tcacgctgca
      181 tgtcgatcat gacaaatgct gttgtttttg aatcgaacgt gaggggaaag ggttgtgcgt
      241 gaaatagttt ttgagccatt tttatattcc ttgattaatg tcaggacgtg aaatgcctgc
      301 tctgctattg caatttattt gaatggtcct tcgatttatt ataggtaggt tcgccttgat
      361 ggacgataga tatttcatcg acttaaccat tgttcatcga tttccagagt tgattaaagt
      421 cgtttcaaaa acttaatata attattatca cgaactaccc ggcactgtgt tgcgcgcgaa
      481 taaagcggca cgcgaaataa tcatcacgac cctgcggcgg aataacacaa cgggtaatga
      541 aacgattctt gaagttttca tccagtcgcc gccaacatca ccgcatttgt ctgatgtttg
      601 atccggcatg cacctccccg atgcagcccg tgcgccgccc ccgccatcga tctcccgaat
      661 taccccgctt tcccggctct tatcagccga tggcccgcca gccacccttg caataattca
      721 ttcactggaa aacggtacgt cgctcaaaac caggcgctac cggtcaaccg caacagatca
      781 atgtgagcgc gagctcatcg ggggataaat tgaacatccg caaattcatc ggtgccacga
      841 gtcgtgaagc gtttcgcctc gttcgcgaag cactgggccc cgatgcggtc gtgctgtcga
      901 accgggtaac cgaagacgga agcgtcgaga tcgtcgctgt cgccgacggc gatctcgcga
      961 agatctcccc gaaagcagcc gcccagcatc gcgagatgaa actgcgggaa tcggccggca
     1021 acccgtcgca tgcgcagtca catgcgccgt cccacttgct gccacacacg ccgtcccatc
     1081 tgaattcgaa ttcaggttcg aacgcgtacg caagcggcga cgtcttttca tcggtattcg
     1141 gcgccaatcc cgaaccgctg gatgatatgg agcccgaagc gcaagcagac gacacatcgc
     1201 gcacgatggc cgaatcgaat ccctggctga tcgagcatgc acgccgggtg gcgcagtcag
     1261 ccgctgacag tgcgccgcaa cgcacgctga gcgcgtcagc agccatcgcg aaggggttgg
     1321 gcagtcccgt gactgtcacg ccacaggact ccgcgcaagc ccacggatgg acccgggaag
     1381 cagcgcaagc cgccgctcgc cgcgcggaac aaaaaaccgc gcaactgctc gcagcaaccc
     1441 agccgcaaac ccagactccg gcggcccaaa ccgccagttc gatgcaggaa ggcgcgttcg
     1501 cgggcctgcc ggcatccgcc gctgcagccg tgaccgaagc catccgcacg cgcatggagc
     1561 aagtcgtgaa cgacaccgtc atgaatgaac tttcgtcgat gcgcggcatg atggaagagc
     1621 acttcgccgg cttgctgtgg ggcgatcgcc agcgccgcag cccgaatcag gccgcgctga
     1681 ccaagcgcct gttcgctgcc ggtttctccg cgcaactggt ccgcttgatg atcgacaaca
     1741 tgccggagat cgaacacgca gaagagtcga tgcaatgggt ccagcaagtg ctcgagaaca
     1801 acctgcccgt catggacagc gaagaatcga tgatggaccg cggcggcgtc tttgcgctga
     1861 tgggcccgac gggcgtgggc aagacgacca ccaccgccaa gcttgccgcg cgctgcgtga
     1921 tgcgcttcgg cgccagcaag gtcgcgctgc tcaccaccga cagctaccgg atcggcgcac
     1981 acgaacaact gcgtattttc ggcaagatcc tcggggtatc ggtgcatgcg gtgaaagacg
     2041 caagcgacct gcaactcgcg ctttcagaac tgcgtaacaa gcacatcgtg ctgatcgaca
     2101 ccattggcat gagccagcgc
//
LOCUS       DATGBK010000927         1820 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_173147, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000927 DATGBK010000000
VERSION     DATGBK010000927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173147"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..950)
                     /locus_tag="VKJ77_12950"
     CDS             complement(<1..950)
                     /locus_tag="VKJ77_12950"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HMC46223.1"
                     /translation="MDTAHASALVRLASETRWPRDAHLAAILRETITSCRGTCASFEA
                     GDGERVALEAGELADEHRAAVLSEHAQYARNAISGKTILAGETAWPGRFVLSVPVETK
                     DGWRALAVSGEHAFTEDDVAFVRVAADTMARVLEREPVMSIDAIYRDALTRLPNRDAT
                     HGRIEEALYSAARHSKQIAVFYIDLDGFKAVNDQHGHAVGDATLVEMARRMTQTLRRD
                     ELIGRLGGDEFAAVLPNVESIDEVLTAAERLSKRLAETVEVDDLTFSLSASIGIAMFP
                     EDGETPDTLLANADAAMYEAKREGAGTIRMFGEHVASEMRS"
     gene            complement(1029..>1820)
                     /locus_tag="VKJ77_12955"
     CDS             complement(1029..>1820)
                     /locus_tag="VKJ77_12955"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NDP-sugar synthase"
                     /protein_id="HMC46224.1"
                     /translation="PQLMGSAGSVKSLERFFAGGPFVVVGCDDLTDANLDALVAFHHK
                     RKALATIGLVEAEVVDQYGVVITSDDGRIVDFQEKPPKGTEHSKLVNTGIYVFDPQIF
                     SFIPENTFYDFGKQVFPALRAADADFYGYRLTGAYWCDIGTPSEYIRATRDVLAGRVH
                     LRGTRTRGVADDTVLGNDVRIEGDVRVGAGVVLGARARIVGPSVIGDGVTIGEDAVLE
                     RAILWNGARVGSRANVRDSVVGISYDVPADTSLADAIVANEPVAP"
BASE COUNT          363 a          582 c          532 g          343 t
ORIGIN      
        1 gagcgcatct cggaggcgac gtgttcgccg aacatccgga tcgtgccggc gccttcgcgc
       61 ttcgcctcgt acatcgccgc atcggcattg gcgagcaacg tgtcgggcgt ttcaccatct
      121 tcgggaaaca tcgcgatgcc gatcgaggcg gaaagcgaga acgtcaagtc gtcgacttcg
      181 acggtttcgg ctaagcgttt gctaaggcgt tcggccgccg tcaacacttc gtcgatgctt
      241 tcgacatttg gcagcaccgc cgcaaactcg tcgccgccaa gccgtccgat caattcatcg
      301 cggcgtagcg tttgcgtcat gcggcgcgcc atctcgacga gcgtcgcatc gccgacggca
      361 tgtccgtgct gatcgttgac ggccttaaag ccgtctaggt cgatgtagaa caccgcgatc
      421 tgtttgctgt ggcgcgcggc ggagtataag gcttcttcga tgcggccgtg cgttgcatcc
      481 cgattgggca ggcgcgtgag cgcgtcgcga tagatcgcat cgatcgacat cacgggctcg
      541 cgttcgagca cgcgtgccat cgtatcggcg gcaacgcgca cgaatgcgac gtcgtcttcg
      601 gtaaaggcgt gttcgcccga caccgccagc gcgcgccagc cgtctttcgt ctcaaccggc
      661 accgaaagga cgaaacggcc gggccaggcg gtttcgcccg ccagaattgt cttaccggaa
      721 attgcattac gcgcgtactg cgcgtgttcg cttagaaccg cagcgcgatg ttcgtcggca
      781 agttcgcccg cttcgagcgc aacgcgctcg ccatcgcccg cctcaaagct cgcacacgta
      841 ccacgacaac tcgtgatcgt ctcacgaagg attgccgcta ggtgggcatc acgaggccag
      901 cgcgtctctg aagccaaacg cacaagggcg gatgcgtgcg cggtgtccat ggtaccgcca
      961 cgcagcgcgt gcaacatatc actatcttcg gataaagaag gccccgggcc tagctaaatt
     1021 ggcggaattt atggtgcaac gggctcattt gccacgatag catcggccaa actcgtgtcc
     1081 gccggaacgt catacgaaat acccacgacg gaatcgcgca cattcgcgcg agaaccgacg
     1141 cgagcaccat tccataaaat cgcacgttcc aggacggcat cttcgccgat cgtcacgccg
     1201 tcaccgatga cgctcgggcc cacgattcgg gcgcgcgcgc ccaatacgac gcctgctccg
     1261 acgcggacat cgccctcgat tcgcacatca ttgccgagca ccgtatcgtc cgcgacgccg
     1321 cgcgtgcgcg taccacgcag atgaacgcgc ccggcaagca catcgcgcgt cgcccggata
     1381 tattccgagg gcgttccgat gtcgcaccag taggcgccgg tcagccggta tccgtagaaa
     1441 tccgcgtcag ccgcgcgcag cgccggaaac acttgcttgc cgaaatcgta gaacgtgttc
     1501 tcaggaatga acgagaaaat ctgcgggtcg aagacgtaga tgccggtgtt cacgagcttc
     1561 gagtgctccg tacccttcgg cggtttctct tggaaatcga cgattcgccc atcgtcggac
     1621 gtgatcacga cgccgtattg atcgaccact tctgcttcaa ccaggccgat cgtcgcgagc
     1681 gctttgcgtt tatggtgaaa cgcgacgagc gcatctaaat tcgcatcggt taaatcgtcg
     1741 cagccgacga ccacgaacgg gccgccggca aaaaaacgtt cgagactctt gaccgaaccg
     1801 gcgctcccca tgagttgggg
//
LOCUS       DATGBK010000928         2154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_103549, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000928 DATGBK010000000
VERSION     DATGBK010000928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103549"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1482)
                     /gene="ppsA"
                     /locus_tag="VKJ77_12960"
     CDS             complement(<1..1482)
                     /gene="ppsA"
                     /locus_tag="VKJ77_12960"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HMC46225.1"
                     /translation="MTNEANVAKDQAYVVPFEQLRMTDVDIVGGKNASLGEMISQLAE
                     AGVQVPTGFATTAQAFRDFLHHNNLTERIAKRLELFDVDDVKALAEAGKEIRQWIVDA
                     PMQPRLEELIRKGFDTLQNGSPEELSFAVRSSATAEDLPDASFAGQQESYLNVVGIDE
                     VLDRMKHVFASLYNDRAISYRVHKGFTHAEVALSAGVQRMVRSDVGAAGVMFTLDTES
                     GFKDAVFVTSSYGLGETVVQGAVNPDEFYVFKTTLEQGKYPIIRRSIGSKLIKMEFTN
                     AGEAGRVKTVDVSHEQRNRFSITDEDVIQLAKYAVIIEKHYQRPMDIEWGKDGRDGKI
                     FILQARPETVKSQAAGKAEMRFKLRGQSNVLATGRAIGQKIGAGPVRVIHDPSEMDRV
                     QPGDVLVADMTDPNWEPVMKRASAIVTNRGGRTCHAAIIARELGVPAVVGCGDATDVL
                     KEGQLVTVSCAEGDEGKIYDGLLETEITEVQRGELPPIPVKIMM"
BASE COUNT          427 a          651 c          583 g          493 t
ORIGIN      
        1 catcatgatc ttcaccggaa tcggcggcag ttcgccacgc tgaacttcgg tgatttcggt
       61 ttcgagcaga ccgtcgtaaa tcttgccttc gtcgccttcc gcgcacgaca ccgtcaccag
      121 ttggccttcc ttcagcacgt cggttgcgtc accgcaaccc accactgccg gcacgcccaa
      181 ttcgcgcgcg atgatggccg cgtgacacgt gcgtccacca cggttcgtca cgatcgccga
      241 tgcacgcttc atcaccggct cccagttcgg gtcggtcatg tcggccacca gcacgtcgcc
      301 gggctgaaca cgatccatct ctgacggatc gtgaatcacg cgcaccggac ctgcgccaat
      361 cttctggccg atagcgcggc ccgtggccag cacgttcgac tggcccctca gcttgaagcg
      421 catttcagcc ttgcccgcag cctggctctt caccgtttca ggacgtgcct ggagaatgaa
      481 gatcttgccg tcgcggccgt ccttgcccca ctcgatgtcc attggacgct gataatgctt
      541 ttcgatgatc accgcgtact tcgcgagctg gatcacgtct tcgtcggtga tggaaaagcg
      601 gttgcgctgc tcgtgcgaca cgtcgacagt cttcacacgg ccggcttcgc cagcgttcgt
      661 gaattccatc ttgatgagct tcgagccgat cgaacgacga atgattggat acttgccttg
      721 ttcgagcgtg gtcttgaaga catagaactc atccggattc acggcgccct gcacgaccgt
      781 ttcgcccagg ccgtagctcg acgtgacgaa cacggcgtcc ttgaagcctg attcggtatc
      841 gagcgtgaac atcacgccgg ctgcgcccac gtccgagcgg accatgcgct gtacgcctgc
      901 cgacaacgcg acttcagcgt gcgtaaagcc cttgtgcacg cgatacgaaa tagcgcgatc
      961 gttatacagc gacgcgaaca cgtgcttcat gcgatcgagc acttcgtcga tgccaaccac
     1021 gttcagatag ctttcctgct gacccgcgaa cgatgcgtcc ggcaagtctt cagcagtcgc
     1081 cgaagagcgc acggcgaacg acagctcttc cggcgagccg ttttggagcg tgtcgaaacc
     1141 tttgcgaatc agttcttcga ggcgcggttg catcggcgcg tcgacgatcc attgacggat
     1201 ctccttgccg gcttcggcca aggctttcac gtcgtctacg tcgaagagtt ccagacgctt
     1261 ggcgatgcgc tcggtcaggt tgttgtgatg caggaagtcg cgaaacgcct gtgccgtggt
     1321 cgcaaaacca gtgggcactt gcacgcctgc ttcggcgagc tgactgatca tctcgccgag
     1381 tgacgcattc ttgccgccga caatgtcgac gtcggtcatt cgcaactgct cgaatggcac
     1441 tacatacgct tggtcctttg caacgttagc ttcgttagtc atgtaagccc ctaaggtgga
     1501 tggaattcac gatcatgcaa gtgggctcga agcggcggcg ctcattgggg gcgcgtaccg
     1561 caacctgcat aacctgtttg ataagcacat gccgcatgtt tcgatccacg cgccgttggg
     1621 gcaggacgta tcgcgtatcc acgggaacgt gagtccttcc aaaaccacgt tgcgatgctg
     1681 aaaaacacga cttcgaaaca catcgatatc ggttaaaact gcctataaaa tctacgtttt
     1741 gtttcgaaaa cgcacgaatg ggcggtaact tccgtgaatc gatgattaat cgtccgcaat
     1801 tgcttatcga acaggttgcc gctattctac cgtgctaact ctgggaaatg tttcatcgcg
     1861 gggcataaaa gcgctgcgca atgagaccct tcacacgtgg atcgtgtggc ggcgcacatc
     1921 gggtgtttta gtggatgctt aggtttggag ttgttagcgt gacgccgtgc ccggcgcgac
     1981 gtcgatgcgt gctcataccg ggccttttgc gtcaatccgc tcagtcgatt aatcgaccat
     2041 aatcatcgtc aattcatttc acgtaatttc acgaccctca acgccgacgc cgcctaccgt
     2101 attcatcgtt tccgatggca ccgggatcac tgccgagaca ttcgcgcatt cgat
//
LOCUS       DATGBK010000929         2724 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289079, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000929 DATGBK010000000
VERSION     DATGBK010000929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2724
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289079"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VKJ77_12965"
     CDS             <1..466
                     /locus_tag="VKJ77_12965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46226.1"
                     /translation="IDPLIIISGLPASLAGIAWMLFATHTTLSVPALTGTILCIGIAT
                     ANSILVINTAREMLQGGAAPLTAALEAGFNRFRPVLMTALAMLIGMLPMALGLGDGGE
                     QNAPLGRAVIGGLAIGTVSTLLFVPVVFGMVHAWIEKRHLKKAAAQATPAVQ"
     gene            508..1695
                     /locus_tag="VKJ77_12970"
     CDS             508..1695
                     /locus_tag="VKJ77_12970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC46227.1"
                     /translation="MHEPPALAGEPGEKSATRRRFVMPLAFGAIAAALLVIGIVPRLQ
                     ASTALTSQAAAQHALSVSVIKPRSAPAVQELLLPGSVMPYADASIYARTSGYLEHWYA
                     DIGARVKTGQTLAVIQTPELDAQLSQARADEATAQANFNYAKVSAQRWQDMLKTQSVS
                     QQDTDTKVSDMQAKRAMLQSAQANVQRLSELVSYEKVSAPFDGVVTARNVDVGALVTA
                     GGSPGLAAMPGELFHVEQTDTLRVFVDVPQNDAPYVTPGTEVYLSVQQYPGRRFAAKV
                     VRSAGAIDPVSRTLHVEVDVDNHDSALLPGAYAQVHLALHNASPALDLPVSALLFRPN
                     GVTVAVVDSTGKTALKTVTVGRDFGTHVEVRTGLAATDRVIDNPGDAISPGEPVQIVS
                     SAS"
     gene            1707..>2724
                     /locus_tag="VKJ77_12975"
     CDS             1707..>2724
                     /locus_tag="VKJ77_12975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC46228.1"
                     /translation="MLMSPSALARKTLAVCLGVALSACSTLPAYQTPDVSVSAHYAGA
                     AGWATATPADTQPRGPWWTVFGDSQLNELESRIDVSNQTVKKAVAQLQQARAFVDYQR
                     AGFFPTVTAGASESRFRTSQNVQGHSLAGKTIPDYSTGLSASWEPDLFGRVKDATVNA
                     QANAAASEADLAAVRLSMTSDLAVDYFDLRSLDTQKKLLDDTVNAYADALRILNQQLK
                     NGAIDASAVALASTQLESTRTQDTDIDVQRAQLQHAIATLVGEPASTFSIAAKPQSFV
                     VPSIPPSLPSQLLERRPDIAAAERRVFAANAQIGEAHAAFFPDLALSASAGLESTFFA
                     PWLSA"
BASE COUNT          509 a          913 c          811 g          491 t
ORIGIN      
        1 gatcgacccg ctgatcatca tcagcggctt gcctgcgtcg ctggcgggta tcgcgtggat
       61 gctcttcgcc acgcacacca cgctcagcgt tccggcgctc acgggcacga tcctgtgcat
      121 cggtattgca acggccaaca gcattcttgt catcaacacg gcgcgcgaga tgttgcaagg
      181 cggcgcggcg ccgctgaccg ctgcccttga agccggcttc aaccgcttcc gtcccgtcct
      241 gatgaccgcg ctcgcgatgc tgatcggcat gctgccgatg gcgctgggtc tgggcgacgg
      301 tggcgaacag aatgcgccgc ttgggcgtgc cgtgatcggc ggcctggcga tcggcacggt
      361 ctccaccctt cttttcgtcc cggtcgtatt cggcatggtc cacgcgtgga tcgaaaagcg
      421 ccatttgaag aaagcggcgg cacaagccac cccggccgtt cagtgactgc ctttaaacga
      481 gcatagacca tgaaccatca caacgacatg cacgaaccac ccgcgttggc cggcgagcct
      541 ggcgaaaagt ctgccacccg gcgacgcttc gtgatgccgc tggcattcgg cgctattgct
      601 gccgcgttgc ttgttattgg cattgttccg agactgcagg ccagcactgc gctgacctcg
      661 caagccgctg cgcaacatgc gcttagtgtt tcggtcatca agccgcgcag cgcccccgct
      721 gtccaggaac tcctgctgcc cggttcggtg atgccctacg ccgatgcctc gatctacgcc
      781 cgcacaagcg gttatctcga gcactggtac gccgacattg gcgccagggt gaagacaggg
      841 caaacgctgg ccgtcatcca gacaccggaa ctcgatgcac agcttagcca ggctcgtgcc
      901 gacgaagcaa cggcacaagc caatttcaac tacgccaagg ttagcgcgca acgctggcag
      961 gacatgctga aaacacagtc ggtctcgcaa caggacaccg acaccaaggt cagcgacatg
     1021 caggcgaaac gcgccatgct gcagtccgcg caggctaatg tgcaacgcct gtccgagctt
     1081 gtgtcgtatg aaaaggtgag cgcgcccttc gacggagtgg taacggctcg caacgtggac
     1141 gtaggcgcgc tggtcacggc gggcggttca cccggtctgg ccgccatgcc cggtgaactc
     1201 ttccatgtgg agcagacgga cacgttgcgg gtgttcgtcg atgtgccgca aaacgatgcg
     1261 ccctacgtca cgccgggcac cgaggtttat ctgagtgtgc agcaatatcc aggcagacgg
     1321 ttcgccgcga aagtcgtgcg cagtgccggt gcgatcgatc cggtcagccg cacgctgcac
     1381 gtggaagtcg atgtcgacaa ccacgacagc gcgctgctgc ccggcgccta tgcacaggta
     1441 catctcgcgc tgcacaacgc cagtcccgcg ctcgacctgc cggtgagtgc gctcctgttc
     1501 agacccaatg gagtgaccgt tgcggttgtc gacagtacgg gtaaaaccgc gctcaagacc
     1561 gtgaccgtcg gacgggattt cggcacccac gtggaagtca ggaccgggct cgcggccacc
     1621 gatcgcgtca tcgacaatcc gggcgacgct atcagcccgg gtgagccggt gcagatcgtt
     1681 tcatccgcct catgaggatc gtgctcatgc ttatgtcacc ctccgccctc gcccgcaaga
     1741 cgttggccgt ctgcctgggc gtcgcactca gcgcttgctc caccttgcct gcctaccaga
     1801 cgccggacgt ctccgtttcc gcgcactatg ccggcgccgc agggtgggcg accgccacgc
     1861 ccgccgatac ccagccgcgc ggcccatggt ggaccgtctt cggcgactcg cagttaaacg
     1921 agctcgaaag ccgtatcgat gtatcgaacc agactgtcaa gaaagcggtc gcgcagttgc
     1981 agcaggcacg tgcattcgtc gactatcagc gcgccggctt cttcccgacc gtgaccgcgg
     2041 gcgcgtccga gagccggttc cgcacgtcgc agaacgtgca gggacattcg cttgcgggca
     2101 aaaccatacc cgactattcg accggcttga gcgcttcgtg ggagcccgac ctgtttggcc
     2161 gcgtgaaaga cgcaaccgtc aacgcgcaag cgaatgcggc tgcaagcgag gccgatcttg
     2221 cagcggtgcg cctctcgatg accagcgatc tggccgtcga ctacttcgac ctgcgttcac
     2281 tcgatacgca aaagaaactc ctcgacgaca ccgtgaacgc ctatgccgac gcgctgcgca
     2341 tcctgaacca gcaactgaag aatggcgcga tcgatgcctc ggcggtcgcg ctggcctcga
     2401 cccaactgga aagtacccgg acgcaggaca cggacatcga tgtccagcgc gcgcagcttc
     2461 agcacgcgat tgctaccttg gtcggagaac ccgcgtcgac gttctccatc gcggccaagc
     2521 cacaatcctt cgttgtaccc tctattcctc ccagcctgcc ctcgcagctt ctcgaacgcc
     2581 gccccgatat cgccgctgcc gaacgacgcg tatttgcggc caatgcgcaa atcggcgaag
     2641 cgcatgccgc gttttttccc gatctcgcgc tgtcggcaag cgccggactg gaaagcacgt
     2701 tcttcgcgcc gtggctgagt gccc
//
LOCUS       DATGBK010000930         1767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_149551, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000930 DATGBK010000000
VERSION     DATGBK010000930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149551"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1767)
                     /locus_tag="VKJ77_12980"
     CDS             complement(<1..>1767)
                     /locus_tag="VKJ77_12980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46229.1"
                     /translation="RDVGEVVDSVEDLRNLGLINNKRAVLVILYRQPGANIIDTIDRV
                     KAMVPQLQAALPADVEITPTSDRSTTIRASLHDTEFTLIVAVALVVMVVFLFLRNWRA
                     TLIPSVAVPISIIGTFAAMYLLGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIEN
                     GVPRMKAAILGAQEVGFTVLSMSISLVAVFLPILLMGGIVGRLFREFALTLSLAIAVS
                     LVVSLTVTPMMCARLLHEPHEQKQPGRFSRWLERQFVRMQDGYARTLGVALAHPRIVL
                     LVLLATIGLNVYLYVIVPKGFFPQQDTGRLVGGIQADQSTSFQAMKGKFSEMMRIVQA
                     DPAVESVAGFTGGRQTNSGFMFISLKAKKDRKVSAEEVIQRLRAPLSDVAGVRTFLQA
                     VQDIRAGGRQSNAQYQFTLLADSTTDLYTWGPKLTDALLNRPELADVNSDQQQGGLES
                     FVTIDRATSARLGIQPAQIDNTLYDAFGQRQVSTIYNELSQYHVVMEVAPKYWQDPEM
                     LKQIYVSKSGGTAGGAASTNATTTTSTSTSTSTSTSSSSSASSTDTTSSLALASIRNA
                     ATNAIAASGKSSSSAGAAVSTS"
BASE COUNT          366 a          547 c          528 g          326 t
ORIGIN      
        1 tgcgacgtcg acacagccgc gcccgccgac gaactggact tcccgctcgc ggcaatggcg
       61 ttggtcgctg cattgcggat ggacgccagc gccagcgaac tggtcgtgtc agttgacgaa
      121 gcgctgctgc tcgaactcgt ggatgttgat gttgatgttg aagtcgaagt ggtcgttgtc
      181 gcgttagtcg atgccgcccc gcccgcagtc ccacccgact tgctcacata aatctgcttg
      241 agcatctccg ggtcttgcca gtatttcggc gcgacttcca tcaccacgtg gtattggctc
      301 aactcgttgt agatggtaga cacctggcgc tggccgaatg catcgtagag cgtattgtcg
      361 atctgcgccg gctgaatgcc caggcgcgcg gacgtcgccc ggtcgatcgt cacaaacgac
      421 tccaggccgc cttgctgctg gtccgaattg acatcggcga gttcgggacg gttgagcagg
      481 gcgtcggtga gcttcggccc ccacgtgtaa aggtcggtgg tggaatcagc cagcagcgtg
      541 aactgatatt gcgcattcga ttgtcgcccg cccgcgcgaa tgtcctgcac ggcttgcagg
      601 aaggtccgta cgcccgcgac gtcggaaagc ggcgcgcgca ggcgctggat cacctcttcg
      661 gccgatacct tgcgatcctt cttggccttc agcgagatga acatgaagcc ggagttggtc
      721 tgccgtccgc ccgtgaaccc ggcgacgctt tccacagccg gatcagcttg cacgatccgc
      781 atcatctcgg aaaacttgcc tttcatcgcc tggaaagacg tgctctggtc agcctgaatg
      841 ccgccaacga gccgccccgt atcctgctgc gggaaaaatc ccttcggcac gatgacgtac
      901 agatacacat tcaacccgat ggttgcgagc aacaccagca gcacgatcct cggatgcgcg
      961 agcgccacgc caagcgtgcg cgcgtagccg tcctgcatcc gcacgaactg gcgctcgagc
     1021 caacgagaaa accggccagg ttgcttctgt tcgtgcggtt catgcagcaa acgcgcgcac
     1081 atcatgggcg tgaccgtcag cgagacaacc agcgaaacgg cgatcgccaa cgacaacgtc
     1141 aacgcgaatt cgcggaacaa cctgccgaca ataccgccca tcaacaagat gggaagaaac
     1201 acggcgacca gcgaaatgct catcgatagc accgtaaaac ccacttcctg cgcgccaaga
     1261 atggcggctt tcatgcgagg gacgccgttc tctatgtgcc gcgagatatt ttcaagcacg
     1321 acaatggcgt cgtcgaccac gaaccctgtc gcgatcgtca aagccatcag cgagaggtta
     1381 tcgagcgaga agccgagcag gtacatcgcg gcgaaggtgc cgatgatcga gatcggcacg
     1441 gccacgcttg gaatcagcgt cgcgcgccag ttgcgcagga acaggaacac gaccatcacg
     1501 accagcgcca ccgcgacaat cagcgtgaat tccgtatcgt gcagcgacgc gcggatcgtg
     1561 gtcgaacgat cggaggtcgg cgtgatctcg acgtcggccg ggagcgcggc ctggagttga
     1621 ggcaccatcg ccttcacgcg gtcgatggtg tcgataatgt tcgcacccgg ctgccggtaa
     1681 aggatcacga gcactgcgcg cttgttgttg atgagaccca ggttgcgcag gtcctcgacc
     1741 gaatcgacta cttcaccgac gtcgcgc
//
LOCUS       DATGBK010000931         1885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_57633, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000931 DATGBK010000000
VERSION     DATGBK010000931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57633"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1871)
                     /locus_tag="VKJ77_12985"
     CDS             complement(<1..1871)
                     /locus_tag="VKJ77_12985"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HMC46230.1"
                     /translation="MRRDTLDAFVARFASVGFDAAALYPCYGLAEATLFVAGGRRGAG
                     LVSARFESDALSAARVAVTSESEPGTVLVACGATQPGHVVEIVDPVNGQALTSGQIGE
                     IHVSGPSVAHGYWQRPDASASTFRTGSTTRWLRTGDLGFMHDGQLYIAGRCKDLIIVR
                     GKNVYPQDIEQAVEARCEFVRKGRVIAFAADIDGAEGPALALEIAPMMKKRFTAADIV
                     AQLNRCVFDACGEVPIAVVLLNPAALPKTSSGKLQRAATRQGWQDRTLDAYALWEQGR
                     FVLGAAEADTSQQAALDGLEKELAALWSEVLESEITTSDAHFFASGGSSLTAVRLAAR
                     ICEHWRRPFEIGQVFEFPTLADMTTALAQALEKPECESVDALPLERGDELVVSHAQQR
                     QLFAWQLDPQSRAYHIATGIRLRGQLDIDALRRSFDILVERHAALRTSFVETPGAAHV
                     YVPRIHPATPLDWMRADLLDEDFSEETLAKVAQRFAAEPFDLAQGPMLRVGLVHYGDN
                     EHLLLLALHHIATDGWSMQIIVDEFVAHYRAAVTNTPTTIVAPLIAYTDYAAWQHRWL
                     DGSEAQRQVEYWRNQLGDEAPALALPFDRSPAAGTGSLAAARVPFALPASLARRVRDA
                     "
BASE COUNT          365 a          613 c          578 g          329 t
ORIGIN      
        1 gcatcgcgaa cccggcgtgc gaggcttgcg ggaagcgcga acggcacgcg cgcggcagcc
       61 agactgccgg taccggcagc aggcgaacga tcgaatggca aagccagcgc cggcgcttca
      121 tcgcccagtt ggttgcgcca gtattcaacc tggcgctgtg cttcgctgcc atcaagccaa
      181 cggtgttgcc acgcggcgta gtcggtataa gcaatcagcg gcgcgacaat cgtcgtcgga
      241 gtgttcgtga cagcggcgcg atagtgcgcg acaaattcat cgacgatgat ctgcatcgac
      301 catccgtcgg ttgcgatgtg atgcagcgcc agcagcagca agtgttcgtt gtcgccatag
      361 tggacgaggc ccactcgcaa catgggtcct tgcgcgagat cgaagggctc ggcggcgaag
      421 cgctgcgcga ccttggcgag cgtttcttcg ctgaagtctt catcaagcag atcggcacgc
      481 atccagtcga gtggtgttgc cggatggatt cgcggcacgt agacatgcgc cgcgcccggc
      541 gtctcgacaa agctcgtacg cagcgcggca tgacgttcaa cgaggatgtc gaagctgcgg
      601 cgcagcgcgt caatgtcgag ttggccacgc aaccgtatgc cggtagcgat gtgataagcg
      661 cggctctgcg gatcgagttg ccacgcgaac agttgccgct gctgcgcgtg cgacacaaca
      721 agctcatcgc cacgttccaa cgggagggca tcgactgact cgcactccgg tttttcaagt
      781 gcctgagcca gcgctgtagt catgtccgcg agcgtcggga attcaaaaac ctgtccgatc
      841 tcgaatggcc gtcgccaatg ttcgcagatg cgtgccgcta agcgtaccgc cgtcagcgaa
      901 ctgccgccag acgcgaaaaa atgcgcatcg ctcgtagtga tctcgctttc gagcacctcg
      961 ctccagagcg ccgcgagttc tttttcgagg ccgtcgaggg cagcttgctg cgacgtatcg
     1021 gcctcggctg cgcccaaaac aaagcgaccc tgttcccaaa gcgcatacgc atcgagcgtg
     1081 cggtcctgcc agccttgccg ggtagccgca cgctgcagct tgccgctcga tgtcttcggc
     1141 aacgccgcgg gattgagcag cacgacagcg atgggaacct cgccgcacgc gtcgaacaca
     1201 cagcgattca actgcgccac gatgtcagcc gccgtgaagc gcttcttcat catcggcgcg
     1261 atttcgagtg ccagcgcagg accttcagcg ccatcgatat cggcggcaaa cgcgatgacc
     1321 cgacctttgc gcacgaactc gcagcgcgct tcaacagcct gctcgatatc ttgcggatac
     1381 acgttcttgc cgcgcacgat gatcaggtcc ttgcatcggc cggcgatata gagctgcccg
     1441 tcatgcatga aacccaggtc gccggtgcgc agccatcgcg tcgtgctgcc ggtgcgaaac
     1501 gtcgacgcgc tggcatcggg acgttgccaa taaccgtgcg ccacgctcgg tccgctgaca
     1561 tggatttctc cgatctggcc gctggtgagc gcctgcccat tcaccggatc gacgatctca
     1621 accacgtggc ccggttgcgt cgcaccgcat gcgaccagca ccgtgcccgg ctcactctcc
     1681 gacgtgacgg ccacgcgagc ggcagacaaa gcgtcgctct caaacctggc cgataccaac
     1741 cccgcgccgc gccggccacc cgccacgaag agcgttgctt cggcgaggcc atagcacgga
     1801 tatagcgcgg cggcatcgaa gccgacagac gcgaagcgcg cgacaaacgc atcgagcgtg
     1861 tcgcgtcgca cgggttcaga tcccg
//
LOCUS       DATGBK010000932         1571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_80525, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000932 DATGBK010000000
VERSION     DATGBK010000932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80525"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..783)
                     /locus_tag="VKJ77_12990"
     CDS             complement(<1..783)
                     /locus_tag="VKJ77_12990"
                     /inference="COORDINATES: protein motif:HMM:NF025188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylacetaldoxime dehydratase family protein"
                     /protein_id="HMC46231.1"
                     /translation="MESAIPTHLRTARTRDARTPKNYQPPYPSFVARHVPSVKRVVMA
                     YFGIQYRDAPTQASRGALDWLAARFAGSNGPTHWDRAQYVDKARFTNVVSVAYWDDPK
                     LFDAWFEATRDGWTGDVRTKDNAGFFIEVLRPAVESYETLFSSLGRSEGIAVLADDMS
                     GEVQEHAYWGGMRDRIPLSQSDDLAPRGNPRIVRQGSRLQVVPQDNICMIRSGQDWTD
                     TDDAERRMYLNDVEPVLRAGMDFLRDEGPAIGCFTNRYMRVLD"
     gene            complement(801..>1571)
                     /locus_tag="VKJ77_12995"
     CDS             complement(801..>1571)
                     /locus_tag="VKJ77_12995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HMC46232.1"
                     /translation="DSPQADMLRAAVRKAGLTAVLGVSERDGGSLYIAQWLLDPQGET
                     IATRRKLRPTHAERTVYGEGDGSDLAVHDRPDVGRLGALCCWEHLQPLSKYAMYAQNE
                     QVHVASWPSFSLYDPFAPALGWEVNNAASRVYAVEGSCFVLAPCATVSQEMVDTLCDR
                     PDKNALLHVGGGHAAIFGPDGSSLAEKLPPEQEGLLYADIDLGAIGVAKNAADPAGHY
                     SRPDVTRLLFNKKPSKRVEHFALPVDGEAVEAVEQIAS"
BASE COUNT          283 a          518 c          482 g          288 t
ORIGIN      
        1 gtcgagaacg cgcatgtagc ggttggtgaa gcatccgatc gccggccctt cgtcgcgcag
       61 aaaatccatt cccgcgcgca ggactggctc gacatcgttg agatacatcc gccgttcggc
      121 atcgtcggta tcggtccagt cctgtcccga ccggatcatg cagatgttgt cctgcgggac
      181 cacttgcaag cgtgagccct gccggacaat tcgcggattg ccgcgtggcg cgaggtcgtc
      241 gctttgggat agcggaatcc gatcgcgcat tccgccccaa taggcgtgct cctgtacttc
      301 cccgctcatg tcatcggcca gcacggcaat gccttccgac cggcccagcg aggaaaacag
      361 cgtctcgtag gactccaccg ccggccgcag cacttcgatg aagaaaccgg cgttatcctt
      421 cgtgcgcaca tcgccggtcc atccgtcgcg ggtcgcctcg aaccacgcgt cgaacaattt
      481 gggatcgtcc caataggcaa ccgagacgac gttggtgaaa cgcgctttat cgacgtattg
      541 cgcacgatcc cagtgcgtcg gcccgttgct gccggcaaag cgggccgcga gccagtcgag
      601 cgcgccgcgg ctcgcttgtg tcggcgcatc ccgatactga atgccgaaat aggccatcac
      661 cacacgcttc acgctgggta cgtgacgggc gacgaacgag gggtaaggcg gctgatagtt
      721 tttcggcgtc cgcgcatccc tggtgcgcgc ggtccgcaga tgagtcggga tagcggattc
      781 catgacacgt ctccggaata tcaggatgcg atttgttcca ctgcctcgac agcttcgcca
      841 tcgaccggca acgcaaagtg ctcgactcgt ttcgagggct tcttgttaaa cagcagccgc
      901 gtcacgtcgg gccgcgagta atgccctgcc ggatcggctg cattcttcgc cacgccgatc
      961 gcgccgagat cgatgtccgc gtaaagcagc ccttcctgct cgggcggaag tttttcggcc
     1021 agcgaactgc cgtccggtcc aaagatcgcg gcatgcccac cgccgacatg aagcagcgcg
     1081 ttcttgtccg gacggtcgca cagcgtatcc accatctcct gcgagacggt ggcgcacggc
     1141 gcgagcacga agcacgagcc ctccacggca tagacgcgcg atgccgcatt gttgacttcc
     1201 cagccgagcg ccggcgcgaa cggatcgtac agcgagaagc tcggccacga ggcgacatga
     1261 acttgctcgt tctgcgcgta catggcgtat ttcgacaacg gctggaggtg ctcccagcag
     1321 cacagcgcac cgagccgtcc gacgtcgggc cggtcatgta ccgcgagatc gctgccgtcg
     1381 ccctcaccgt aaacggtgcg ttcggcgtgg gtcgggcgaa gcttgcgccg cgtagcgatg
     1441 gtctcgccct gcggatccag caaccactgt gcgatgtaga gactgccacc gtcccgttcc
     1501 gacacgccca gcacggcggt caatccggcc tttcggaccg cggcgcggag catgtcggcc
     1561 tgcggactgt c
//
LOCUS       DATGBK010000933         2573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_219536, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000933 DATGBK010000000
VERSION     DATGBK010000933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219536"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            342..764
                     /locus_tag="VKJ77_13000"
     CDS             342..764
                     /locus_tag="VKJ77_13000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46233.1"
                     /translation="MTAGPGAGSNITWTGGDHVSVRPPGIIHMLTVSLDVRNPKIMSM
                     RGNDIRTGVLTRVVACYRAHADKLSTERADASGQSLLALTIYDPAGIHCGPEDGDTGV
                     TRERLLIVPATGLPAMRERYAGNTLVERWVISGLHATP"
     gene            complement(890..1177)
                     /locus_tag="VKJ77_13005"
     CDS             complement(890..1177)
                     /locus_tag="VKJ77_13005"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HMC46234.1"
                     /translation="MYGTRRKKFTLVPLIALAALSLAVTVPALSASAVHAAAPVRYAT
                     VTVRPGDNIWSLAESRTATGGDVQAVVDQIVAANHLAGVSLVPGQHLRIPD"
     gene            1394..2032
                     /gene="lexA"
                     /locus_tag="VKJ77_13010"
     CDS             1394..2032
                     /gene="lexA"
                     /locus_tag="VKJ77_13010"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HMC46235.1"
                     /translation="MTERATTEKQQRILDVIREFTADRGYPPSVREIGERVGLSSSST
                     VQSHLKTLERRGLLRRDPTKPRALVPHDYLRPADRPPVKAEPRDDVAMIPIIGKVAAG
                     TPITATENIEDTFAMPASFARRPGTFMLRVQGDSMIDAAILDGDLIVVQPGPNATNGE
                     IVVAMIDDEATVKRFYREAGRIRLQPENPTMAPIYADDVTIVGRVEAVVRRL"
     gene            2112..>2573
                     /locus_tag="VKJ77_13015"
     CDS             2112..>2573
                     /locus_tag="VKJ77_13015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46236.1"
                     /translation="MLALRDALPFSFGGLIVGLIGFLIFAEQGDLVTRFRHAFSSARL
                     VLTLDVGFTTMSVVLVCALAVVLARRLTYPPWLSIPTTLVVFVLSMPHPRVAKIEDYS
                     LALGASGLFLAIVVSLLTAAALSAARARLGSRYMLVGALVIVAIAFGAFELH"
BASE COUNT          446 a          798 c          811 g          518 t
ORIGIN      
        1 tggttaaaga ataagaaaca catggtgcaa gaagtcgcgc gccacatgag cggcggcctc
       61 gatttgtgga tggttgaggc gctcgagttc ctcgaccgcc acaccgcaca cagcattatc
      121 attacacgcc ggccctagat cggcgcggtc cggcgttttt cgggtagggt gatctggtga
      181 ctgctgcagc tgataccgca ttacaagcac tcgaacgctg ggtgcgcgca actcccgcgt
      241 acgcttacac cgtaagcgcg accgagttta gcggttcgcg cgtcgagtca accacatttg
      301 agattacgta cgactcgcgc aatcaaaccg agcacattca cgtgaccgcg ggccctggtg
      361 ccggaagtaa catcacgtgg accggcggcg atcacgtcag cgtgcgccca ccgggtatca
      421 tccatatgct cacggtttcg ctcgacgtgc gcaaccccaa aatcatgtcg atgcgcggca
      481 acgacattcg tacgggcgtt ctcacgcgcg tcgtcgcgtg ttatcgcgca cacgccgaca
      541 aactctcgac cgaacgcgcc gacgcgagcg gccaatcact tcttgctctc acgatatacg
      601 atccggcggg cattcactgc ggccccgaag acggcgacac aggcgttacg cgcgagcgct
      661 tactgatcgt gccggctacc gggcttccgg cgatgcgcga acgctacgcc ggcaacaccc
      721 tcgtcgaacg ctgggtgatc agcggtttgc acgcaacgcc gtaagcgttt tcgttgcggc
      781 ggagcgtttg attagttggg cgagctcgcg cgcgtggccg ggcctcccgc gcgatggcgc
      841 aaaaaaaagc gccccccggc gcttttttcg atcctggctg atggattggc tagtcgggga
      901 tgcggaggtg ttggccgggg accagggaga cgccggcgag gtggttcgcg gcgacgattt
      961 gatcgacgac ggcttggacg tcaccgccgg ttgcggtgcg cgattcggcc agcgaccaga
     1021 tgttgtcgcc ggggcgcacg gtgaccgtgg cgtagcggac cggggcggcg gcgtgaaccg
     1081 ccgaggccga gagcgccggg accgtgacgg ccaggctcaa cgcggcgagc gcgatcagtg
     1141 gtacgagggt gaatttcttg cggcgagtcc cgtacattac gcttgctccg atcctagata
     1201 ttgtggcgaa cggctgttcg tcccctagat gatacccaat ctatggcatc ttagtcaata
     1261 tcctacgaac atatgtttgc ctttttatgt ccgtccgtgc taggatgccg ggtaatgagg
     1321 ccagtctatc tagcgactgt gcctactggg tggcagtgtg atgtgagcca ccggcacttt
     1381 tggagaaatt tgtatgaccg aacgggcgac gaccgagaag cagcagcgca tcctcgacgt
     1441 catccgcgag ttcacggccg accggggcta cccgccgtcg gtacgcgaga tcggcgagcg
     1501 cgttgggctc tcgtcctcct cgaccgtgca atcgcacttg aagacgctcg aacgccgcgg
     1561 ccttttgcgc cgcgacccga ccaagccacg cgccctcgtg ccccacgact atctgcgtcc
     1621 ggccgaccgg ccgccggtca aagccgagcc gcgcgatgac gtcgcgatga tcccgattat
     1681 cggtaaggtt gccgcgggca ccccgatcac ggcgacggaa aatatcgaag acacgttcgc
     1741 gatgccggcc agcttcgcgc gccgtccggg tacctttatg ttgcgcgtcc agggcgactc
     1801 gatgatcgat gccgcgatcc tcgacggcga tctgatcgtg gttcaaccgg gccccaacgc
     1861 caccaacggc gagatcgtcg tggccatgat cgacgacgaa gcgaccgtca aacgcttcta
     1921 ccgcgaagcg ggccggatcc ggctccaacc ggagaatcca acgatggcgc caatttacgc
     1981 ggacgatgtt accatcgtcg gccgggtcga ggcagtcgtc cgcagactct aatccggcgg
     2041 tccacccgtt cttcgggtgg cttgaacgta ccgtagaacc gtacgcagta cgattcggcg
     2101 aagcgccggt cgtgctcgcg ttacgggatg cgctcccgtt tagcttcggc gggctcatcg
     2161 tcgggctgat cggattcttg attttcgccg agcagggcga tttggtcacg cgcttccgcc
     2221 acgcgttttc atcggcccgg ctcgtgctca cgctcgacgt cggctttacg acgatgtccg
     2281 tcgtgctggt gtgcgcgctt gccgtcgtgc tcgcgcgccg tttaacgtac ccgccctggc
     2341 tctcgattcc cacgacgctg gtcgtgttcg tcctatcgat gccccatccg cgcgttgcaa
     2401 agatcgaaga ctattcgctg gcgctcggtg cgagcggatt gtttctggcg atcgtcgttt
     2461 cgctcttaac ggcggcggcg ctgtcggccg cgcgcgcacg tttggggtcg cgctatatgc
     2521 tcgtgggcgc gcttgtgatt gtggctatcg cgtttggcgc attcgagttg cat
//
LOCUS       DATGBK010000934         2092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_242596, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000934 DATGBK010000000
VERSION     DATGBK010000934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242596"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..1299)
                     /locus_tag="VKJ77_13020"
     CDS             complement(73..1299)
                     /locus_tag="VKJ77_13020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiH/UbiF/VisC/COQ6 family ubiquinone
                     biosynthesis hydroxylase"
                     /protein_id="HMC46237.1"
                     /translation="MQIETAESIGHAPPADYNFDIAIVGAGPVGLALAGWLAKRSATS
                     RLSVALIDAREPGAASADPRAIAVSHGSRAMLESSLGFPADATPIKRIHVSQRGQFGR
                     TLIDHDEHGLPALGYVVRYGSLVTTLAQAVSKTSVHWFTETTASTPLHDHEGVTLSIH
                     SATGDRTIRARILVNAEGGLYKETDTSSALSADVKNTRDYGQTAIVGTVSVSSPQPGV
                     AWERFTPEGPIALLPCGGARQVDYALVWCCDPEEAARRSQLPDAEFLTELGSAFGERM
                     GRFTRITGRAMFPLGLNALNALVDRRTVAIGNAAQTLHPVAGQGLNLGLRDAHALCDA
                     LSTNGPTTVALSLFAQRRALDRRMTIGATDTLARLFTIDFAPLAAMRGLALSALELVP
                     PIKTVLARQMMFGQRR"
     gene            complement(1289..>2092)
                     /locus_tag="VKJ77_13025"
     CDS             complement(1289..>2092)
                     /locus_tag="VKJ77_13025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24B family metallopeptidase"
                     /protein_id="HMC46238.1"
                     /translation="SAEAHRRAMQTCRPGMHEYEIEAELLYTFRRRGAQAPAYGTIVA
                     AGANACTLHYPAGNTIVREGDLILIDAACELDGYASDITRTFPASGRFTSAQREIYDI
                     VLAAQYAAVDATREGVSFDAPHEAAVRVLAQGLLDTGIIDRNKFTTADDVIAERAYQR
                     FYMHRTSHWLGMDVHDAGDYRDAHAQLDDQGARAWRTLKAGMTLTIEPGLYIRAAEDV
                     PERYANIGIRIEDDAIVTAVGCELMTREVPVDADEIEALMRDAQTPDAN"
BASE COUNT          376 a          665 c          661 g          390 t
ORIGIN      
        1 cagcagaact cactcgcagc gatcacgccg ctcggcctac tcgctcgaag ccgctgcaag
       61 tattccgcca ggtcagcgcc gttgcccgaa catcatctgt cgcgccagca cggttttaat
      121 cggcgggacg agctccagcg cgctcaacgc caatccgcgc atcgcggcga gtggcgcgaa
      181 atcgatggtg aaaagacgcg caagcgtatc ggtcgcgcca atcgtcatac gccggtccaa
      241 cgcacgtcgt tgagcaaaaa gactcaacgc gaccgtcgtc gggccgttcg tcgataacgc
      301 gtcgcacagc gcgtgagcat cgcgtaagcc cagattgagc ccttgccctg caaccggatg
      361 tagcgtctgc gccgcgttgc cgatagcgac cgtgcgcctg tcgaccagtg cattcagcgc
      421 attcagtccg agcgggaaca tcgcccgccc ggtgattcgc gtgaagcgac ccatgcgctc
      481 accgaaagcc gagccgagct ctgtgaggaa ttcagcgtcg gggagttgcg agcggcgcgc
      541 tgcttcttca gggtcacagc accagacgag cgcgtagtcc acctggcgcg cgccgccgca
      601 gggcagcagc gcgatcggcc cttcgggcgt gaagcgttcc cacgcgacgc caggttgtgg
      661 cgacgatacg ctcactgtcc cgacgatagc cgtctggcca taatcgcgcg tgttcttgac
      721 gtcggcggaa agtgcggaag aagtgtccgt ttccttgtac aacccgcctt cggcattcac
      781 cagaatgcgt gcacggatcg tgcggtcgcc ggttgcagaa tggatcgaga gcgtgacgcc
      841 ctcgtggtcg tgcaagggtg ttgatgcagt ggtttccgtg aaccaatgca cgctggtttt
      901 gctgacagct tgcgcgagcg ttgtaacaag cgacccataa cgcacgacgt agccaagcgc
      961 gggcaaaccg tgttcatcgt ggtcgatcag cgtgcggccg aactggccac gttgtgaaac
     1021 gtgaatacgt ttgattggcg tggcatcggc ggggaaaccg agtgacgatt caagcatcgc
     1081 gcggctgcca tgcgacaccg cgatggcacg cggatcagcc gacgccgccc caggctcgcg
     1141 tgcatcgatc aacgctaccg acaagcgcga tgtcgcgctg cgcttcgcca gccagccggc
     1201 tagcgcgagc ccaaccggac ccgcaccgac gatggcgata tcgaagttat aatcggcagg
     1261 cggtgcatgg ccgatagatt ccgcggtttc aatttgcatc tggcgtttgc gcgtcgcgca
     1321 tcaaggcttc gatttcgtcg gcatctaccg gcacttcgcg cgtcatcaat tcgcagccaa
     1381 cggctgtgac gatggcgtcg tcctcgatcc ggataccgat gttcgcatac cgttcgggca
     1441 cgtcttccgc tgcgcgaatg tacaaacccg gctcgatggt cagcgtcatg cccgccttca
     1501 acgtgcgcca cgcgcgggcg ccctggtcgt cgagttgcgc gtgggcgtcg cgataatcgc
     1561 cggcatcgtg cacgtccatg ccgagccagt ggctcgtccg atgcatgtag aaacgctgat
     1621 aagcccgctc ggcgatgaca tcgtcggccg tcgtgaattt attccggtcg atgatccccg
     1681 tgtccagcaa accctgcgcc aatacgcgga cagcagcttc gtgcggtgcg tcgaaactga
     1741 cgccctcgcg ggttgcgtcg acggcggcat attgcgcggc cagcacgatg tcgtagattt
     1801 ccctttgcgc cgatgtgaac cgcccgcttg ccggaaacgt gcgcgtgatg tcagacgcgt
     1861 agccgtcgag ctcgcacgcg gcgtcgatca ggatcaggtc gccctcgcgc acgattgtgt
     1921 tgcccgccgg gtaatgcagc gtgcacgcat tcgcgccggc ggcgacgatc gtgccgtacg
     1981 cgggcgcttg cgcgccgcgt cggcgaaacg tgtaaagcag ctcggcttcg atctcgtatt
     2041 cgtgcatgcc ggggcggcag gtttgcatcg cgcgccggtg cgcttcggcc ga
//
LOCUS       DATGBK010000935         2517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_103594, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000935 DATGBK010000000
VERSION     DATGBK010000935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103594"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2202)
                     /locus_tag="VKJ77_13030"
     CDS             complement(<1..2202)
                     /locus_tag="VKJ77_13030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HMC46239.1"
                     /translation="MASNNAIRIRGARQHNLKNIDLDLYTGQMTVVTGPSGSGKSSLV
                     FDTLYAEGQRRYVETFSAYARQFLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVG
                     TMTELNDHLKLFYARAAELFDKKTSHQVRHDTPETIYVELLERTKASDPRIAITFPVE
                     LPESASDDEVAQWLSASGYTRVQAKRHVDGRQMLDVVADRFRLQKTERSRALEAIEGA
                     LLRGTGRVNVYVLPEPGADDADKPIDTPTWRFSTGLHSPESDIRYADPQPALFSFNSA
                     YGACETCRGFGRVIGVDLGLVIPDERKTLRGGAVKTLQTPAWKENQDDLLRYGAKAGI
                     RLGVPWSELTQKERDWVIGGSPDWSGKWQNQWYGVQRFFDYLESKAYKMHIRVLLSKY
                     RSYTKCPTCEGARLKTEALLWRLGTKEQADAVLKPADRFLPAGVEWTRAQLEALPGLT
                     LHDLMLMPIDRIRRFFDSLTLPSTLLDDALKLLHNEVRTRLKYLCDVGLGYLTLDRQS
                     RTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLV
                     VVEHDPSVMLAADRLIDMGPGPGERGGEIVYDGPPNEIEHGNTLTGAYLGGRKHVAHA
                     SNWQRRAVDAKTPRLVLEGATEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLIQDVLAP
                     ALQRHFGKATESPGAFRALKGADALSEVIFVDQSPIGRTARSNLASYVGAFD"
BASE COUNT          460 a          804 c          767 g          486 t
ORIGIN      
        1 gtcgaatgcg ccaacgtaac tcgccagatt cgagcgcgcc gtgcggccga tcggtgactg
       61 atcgacgaag atcacttcgc tcagggcatc agcacccttt agcgcgcgga atgcgcccgg
      121 cgattcggtc gccttgccga aatggcgctg caacgcgggg gcgagcacgt cctggatcag
      181 cgtcgattta cccgaccccg acacacccgt cacgcacacc agccgctgca gcgggatctc
      241 gaccgtgaca tcgcgcaggt tgtgttcggt cgcgccttcg agcacgagcc gcggcgtctt
      301 tgcatcgacc gcgcggcgct gccagttcga cgcatgcgcc acatgcttgc ggccgccgag
      361 gtacgcgccc gtcagcgtgt tgccatgctc gatttcgttc ggcggcccgt catagacaat
      421 ctcgccgccg cgctcgcccg gccccggacc catatcgata agacgatccg ccgcgagcat
      481 caccgacggg tcgtgctcca ccaccacgag cgtgttgcct gcgtcgcgca agcggtgcat
      541 ggcttcaaca atgcgattca ggtcacgcgg atgcaagccg atgctgggct catcgagcac
      601 gaacagcgtg ttcaccagcg aggtaccgag cgcagtcgtc aggttgatcc gctgcacttc
      661 gccgcccgaa agcgtgcggc tctggcgatc cagcgtgagg taacccaggc cgacatcgca
      721 gagatatttc aggcgcgtac ggacttcgtt gtgcaggagc ttgagcgcgt cgtcgagcag
      781 cgtgcttggc aacgtcagcg agtcgaagaa gcggcgaatg cggtcgatcg gcatcagcat
      841 cagatcgtga agcgtgaggc ccggcagcgc ttccagttgc gcacgcgtcc actccacgcc
      901 tgccggcagg aaacgatcgg ccggcttcag gacggcgtct gcttgctcct tcgtaccgag
      961 acgccacagc agcgcttcgg tcttgaggcg cgcgccctcg catgtcgggc atttggtata
     1021 gctgcgatat ttcgacagca acacgcgaat gtgcatcttg tacgctttcg attcgaggta
     1081 atcgaagaaa cgctgcacgc cgtaccactg gttttgccac ttgccggacc agtccggcga
     1141 accgccgatc acccagtcgc gctccttttg cgtgagttcg ctccagggca caccaaggcg
     1201 aatgcctgcc ttcgcgccgt agcgcagcag gtcgtcctga ttctctttcc atgcgggcgt
     1261 ttgcaacgtc ttgaccgctc cgccgcgcag ggtcttgcgc tcatcgggaa tcacgagacc
     1321 gagatcaacg ccgatcaccc ggccaaagcc gcgacacgtt tcgcatgcgc catacgccga
     1381 gttgaacgag aacaacgcgg gttgcggatc ggcgtagcgg atgtcgcttt ccgggctgtg
     1441 caggccggtg gagaagcgcc aggttggagt gtcaataggc ttgtccgcat cgtccgcacc
     1501 cggctctggc agcacgtaga cattcacgcg gcccgtgccg cgcagcaacg caccttcaat
     1561 ggcctccagc gcccgcgacc gctctgtctt ctgcaagcgg aaccggtccg cgaccacgtc
     1621 gagcatttgc cggccgtcca catgccgctt tgcctggacg cgcgtgtagc cgctggcgga
     1681 aagccactgt gcgacttcgt cgtcgctggc tgactcaggc agttccacag gaaacgtgat
     1741 cgcgatccgc ggatcactcg ccttcgtgcg ttcgagcaat tcgacgtaga tggtctccgg
     1801 cgtatcgtgc cggacctgat gcgaggtctt tttatcgaag agctcggcgg cgcgcgcgta
     1861 gaacagcttc aggtgatcgt tcagctcggt catcgtgccg acggtcgagc gcgaactgcg
     1921 caccggattg gtctggtcga tagcgattgc cggcggcacg ccgtccacgc gatccacctg
     1981 cggacggtcc atccggtcga ggaattgccg cgcataggcg ctgaacgttt cgacgtagcg
     2041 acgctggcct tcggcgtaga gcgtatcgaa cacgaggctc gatttgcccg agcccgaagg
     2101 gccggtcacc acggtcatct gccccgtgta aaggtccaga tcgatgttct tgagattgtg
     2161 ctggcgagcg ccgcgaatgc ggattgcgtt gttggatgcc aatttttcct aaccggttca
     2221 atgagttaga tcgtccgcca gtgcgcctgg gcgaagcgcg gctcgcgctg gggagccgcc
     2281 gttcgccacg cattagcgag ataacggccg atgaagtcga cactgtacac ccatacagtg
     2341 ttttcgacag ggcttgggtc aggaaatggt cacagccaca cgaaacgtgt tccggcacat
     2401 gtaaacctct tctgatcgtt ctcgacaaac caatctaagc gcgccgctca atcgccctcg
     2461 agatccctta tcgtctccag caggtcgcag aggcgatagc cgatttcaat gctcaga
//
LOCUS       DATGBK010000936         1893 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_34895, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000936 DATGBK010000000
VERSION     DATGBK010000936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34895"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VKJ77_13035"
     CDS             <1..375
                     /locus_tag="VKJ77_13035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC46240.1"
                     /translation="AAISPMYLSTYHAIRGIDPKLLELGRTFRLSRAHQIRLIILPTA
                     LPGILVGVRYSAAIALLALVAAEQINASAGIGYILNNANQFQRTDIIVAGILVYAVLG
                     IGVDALLRLIERKVLVWRAAHV"
     gene            368..1105
                     /locus_tag="VKJ77_13040"
     CDS             368..1105
                     /locus_tag="VKJ77_13040"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46241.1"
                     /translation="MSELAYQTELEAAPVVAKLSGVRKRYGENTVLDNVDLTVRKGEV
                     VALVGPSGTGKTTVLRLLAGLESASGGRTEVTGNTSVVFQEPRLIQALRVWKNVLLDD
                     SLKPDARERALTALQDVGLEEKLESWPVSLSGGQAQRVAVARALYRRPDLMLLDEPFS
                     ALDAFTRRSIQSLVLKLWAKYRFGVVIVTHDLDEALLLADRIVILSKGRICHETHVDL
                     ARERDVTSPEFNALKRDLLRQFSLSLS"
     gene            1178..>1893
                     /locus_tag="VKJ77_13045"
     CDS             1178..>1893
                     /locus_tag="VKJ77_13045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46242.1"
                     /translation="MKSWLAGLAGLVAVATLTLSGTAGAQNAPDLKSTKLVIAYQDPA
                     FPALIRKSGVVNGTPYQIEWVLLTGPAANLSALYANRIDLGHMGDTSLTIEQANARTD
                     WTKDSTPLHIVAAWRNAYSKDYPPVITAVRSSANIKNVQDIKGHKVGYNYGGYNHSQY
                     LATLVKAGVTERDIEAIKFADGATSAAGFNAGEVDVYSGALGPILPTIKSGAGTILLR
                     DRDTQIPALNVWTTTSAVLK"
BASE COUNT          358 a          560 c          586 g          389 t
ORIGIN      
        1 gcggccatct cgccgatgta tctcagcact taccacgcca tacgcggcat cgacccgaag
       61 ctgctggaac tcgggcgcac gtttcgcctg tcgcgcgctc atcagatccg gctcatcatc
      121 ctgccaacgg cgttacccgg cattctcgtg ggcgtgcgct attcggcagc cattgcactg
      181 ctggcgctgg tcgcggccga gcagatcaac gcgagcgcgg gcattggcta catcctgaat
      241 aacgcgaatc agtttcagcg tacggacatc attgtcgcgg gcatcctggt ctatgcggtt
      301 ctcgggatcg gcgtggacgc gttgctgcgt ctcattgaac gcaaggttct ggtctggagg
      361 gcggcgcatg tctgaacttg cttatcaaac ggagcttgag gccgcgcctg tcgttgcaaa
      421 actgtctggc gtgcgtaagc gctatggcga gaacacggta ctcgataacg tcgatctcac
      481 ggttcggaaa ggggaggtcg tcgcgctggt cgggccgtcg ggtacgggca agaccacggt
      541 gctgcgcctg ctcgccgggc tcgaatcggc gtcgggcgga aggacggaag tgacgggcaa
      601 cacgtcggtc gtgtttcagg agccgcgtct gattcaggcg ctgcgcgtat ggaagaacgt
      661 ccttcttgac gattccctca agcccgatgc ccgcgaacgg gcgctcaccg cgctgcagga
      721 cgttggcctc gaagagaagc tggaaagctg gcccgtgagt ctttcgggcg gacaggcgca
      781 gcgagtggcg gttgcgcgag ccctgtatcg ccgtcctgat ctcatgctgc ttgacgaacc
      841 gttcagcgcg ctcgacgcgt tcacccgccg cagcatccag agtctcgtgc tgaagctatg
      901 ggcgaaatac cgcttcggcg tggtgatcgt cacgcacgat ctggatgaag cgctgctgct
      961 ggccgaccgc atcgtgatcc tgtcgaaagg acggatctgt cacgagacgc acgtcgatct
     1021 ggcgcgcgag cgtgacgtga catcgcccga attcaatgcg ctcaaacgcg acctgctcag
     1081 gcagttttcg ctcagtctgt cctgacgttt tttcaatcga cgcttttcat tgttcatttt
     1141 tcatagttca ttttcaatca aggtatttat gtcgctgatg aaatcttggc tcgccggtct
     1201 ggcgggtctc gtcgccgttg ccacgctgac actttccggc acggccggtg cccagaacgc
     1261 gcccgacctg aaaagcacca agctcgtgat tgcgtatcag gacccggcgt tccccgcgct
     1321 gatccgcaag tcgggcgtgg tcaacgggac gccctatcag attgaatggg tgttgctgac
     1381 tggaccggct gccaatctat cggcgctgta tgcaaaccgc attgatctgg ggcatatggg
     1441 cgacacgtcg ctcacgatcg aacaggccaa cgcacgcact gactggacga aggattcgac
     1501 gccgctgcat attgtcgcgg cgtggcgcaa cgcctattcg aaggattatc cgccggtcat
     1561 cacggcggtt cgttcgagcg cgaacatcaa gaacgtgcag gacatcaaag gccacaaggt
     1621 cggctacaac tatggcggct acaaccattc gcaatacctc gcgacgctgg tcaaggccgg
     1681 tgtgacggaa agggacatcg aggctatcaa gttcgccgat ggcgcgacgt ccgcggcagg
     1741 cttcaatgcg ggcgaagtcg acgtgtactc aggcgcgctc ggtcccatac tgccgaccat
     1801 caaatcgggc gcgggcacta ttttgctgcg cgaccgcgac acgcagattc cagcgctcaa
     1861 cgtttggacc acgacgtcgg cggtgctgaa gga
//
LOCUS       DATGBK010000937         2753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_126745, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000937 DATGBK010000000
VERSION     DATGBK010000937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126745"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..772)
                     /locus_tag="VKJ77_13050"
     CDS             complement(<1..772)
                     /locus_tag="VKJ77_13050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein CobT"
                     /protein_id="HMC46243.1"
                     /translation="MATSDLTRSDTTQTMLGKMARVLTGRYGVTVSFDASGPRVERDR
                     IVLPELAPEAASPTELDALTGQLDLLVARSKYSTISEISALNSGVTQRIAQAIEDRRV
                     CERLFGDYPGARRFVEKLREQTARNTHERWPTLAWRDKLIWFIERTLWDETPDVTERT
                     PALIATLGAVSELIQTTRASRSTLESVAGARALVARIRSLAAGDVNTMMFSADADEAL
                     DAEQVSGDPDALDAASQEISDAASSDAASMAQAPSDASA"
     gene            complement(900..2111)
                     /locus_tag="VKJ77_13055"
     CDS             complement(900..2111)
                     /locus_tag="VKJ77_13055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC46244.1"
                     /translation="MNAPEPKLQDDPHIGRYERSTGQTAEWWRVTLSDRTQMYRIEHG
                     YGDGPANIDTVVDLENLKSKLQKWHREGFFRPNDPALAPLPAEGRTRFLKELRHAVRQ
                     TPQGANPDSNETTTTIGPVDMPIGQPGPLVPRLNPAYLFPERFGDILQDIVENRRVLL
                     IGHTGAGKTSLIEQVAARTQHGVLRANMNGQTTIGDFVGFWTVKGGETLWVDGVLPTA
                     LREGLWLVVDEIDFAEPSILAVLTAVLEPHGRLLLKEKGNELVAPHPSFRLFATANAV
                     GAMSVYRHLYQGANLMNEAFLDRWRVYLMNYLSPEEEAEVLMRTLGARFTRPMAQTLA
                     AIAADCRAAFAREDLASAFSTRRLLDWADLMLRSGDPERAAGPAIYAKVSAEDAALIR
                     SIIRHHIAFDE"
BASE COUNT          554 a          785 c          796 g          618 t
ORIGIN      
        1 ctgcgctggc gtcggacggt gcttgggcca tgctggcggc atcggaggat gctgcgtcgg
       61 agatttcctg cgacgcagcg tccagtgcat ccggatcgcc cgatacctgc tcggcgtcca
      121 gcgcttcgtc ggcgtcggcg gaaaacatca tggtgttcac atcgccggct gccagcgacc
      181 tgatccgtgc cacgagcgcc cgcgctcccg ccacgctttc gagagtcgaa cggctggcac
      241 gagtcgtctg aatcagctcg ctcacggcgc cgagcgtggc gatgagggcc ggagttcgtt
      301 cggtcacgtc aggcgtttcg tcccagagcg tgcgttcgat aaaccagatc agcttgtcgc
      361 gccaggccag ggtaggccag cgttcgtgcg tgtttcgcgc cgtttgttcg cgcagtttct
      421 ctacaaacct gcgcgcccct gggtagtcac cgaacagccg ctcacagacg cgccggtctt
      481 cgatcgcttg cgcaattcgc tgggtcacgc ccgaattgag cgcgctgatt tcgctgatgg
      541 tggagtactt cgagcgcgcc accagcaagt caagctgacc cgtgagcgcg tccagctcgg
      601 ttgggctggc agcctccggc gcgagttcgg gcaacacaat ccggtcgcgt tccacgcgag
      661 gccccgatgc gtcgaacgat accgtcacgc cgtatcgacc cgtcagcaca cgcgccatct
      721 tgccgagcat ggtttgcgtc gtgtctgaac gggtcaggtc ggaggtggcc acatcggtta
      781 ccggtaaaac gcgatggcgt catgcttcgc gctgtttttc acgtcgactg gcgtgaaact
      841 cgttctgatg ttcggtgagc atcgcgcaac gccggcgtaa ttgcgcataa gtccgccgtt
      901 cattcgtcga acgcaatgtg atgccggatg atgctgcgga tcaacgcggc gtcctccgcg
      961 cttacttttg cgtagattgc cgggccggcg gcgcgctccg ggtctccgga gcgcagcatc
     1021 aggtcggccc agtcgagcag gcgccgcgtc gaaaacgcgc tcgccagatc ttctcgggca
     1081 aacgccgcac ggcaatcggc tgcaatggca gcgagcgttt gcgccatcgg ccgcgtgaag
     1141 cgcgcgccaa gcgtgcgcat caacacttca gcctcctcct cgggcgacag gtaattcatc
     1201 agatacacgc gccagcgatc aaggaacgcc tcgttcatca ggttggcgcc ctgatacaga
     1261 tgccgataaa cgctcatggc gccgaccgcg tttgcggttg cgaacagccg gaaggacgga
     1321 tgcggcgcca ccagctcatt gcctttttcc ttcagcagca aacgcccgtg gggttcgagc
     1381 accgcggtga gaacggcgag aatcgaaggt tcggcgaagt cgatttcatc gactacaagc
     1441 cacaggcctt cgcgcaaggc tgtcggcaac acaccgtcca cccaaagcgt ttcgccgcct
     1501 ttcacggtcc agaacccgac gaaatcgccg atggtcgtct ggccgttcat attcgcccgc
     1561 agcacgccgt gttgcgtacg cgccgcgacc tgctcgatca ggctcgtttt tcccgcgccg
     1621 gtatggccga tcagcagcac ccgccggttc tccacgatgt cctggaggat gtcgccgaaa
     1681 cgctcgggga agagatatgc ggggttcagg cgcggcacga gcggaccggg ctgaccgata
     1741 ggcatgtcca ccgggccgat cgtcgttgtt gtttcgtttg aatccggatt cgcgccttgc
     1801 ggcgtttgac gcacggcgtg ccgaagttct ttcagaaagc gggttcgtcc ttctgcgggc
     1861 aacggcgcga gagcgggatc gttgggtcga aaaaaaccct cccgatgcca cttttgcaac
     1921 ttcgacttga ggttttccag gtcaacgacc gtatcgatat tggccggccc gtcgccgtat
     1981 ccatgttcga ttcgatacat ctgcgtccga tcggagagcg tcactcgcca ccactcggcg
     2041 gtctgtcccg tcgagcgttc gtagcggcca atgtgaggat cgtcttgcaa cttcggttcg
     2101 ggcgcgttca ttggcttgca gggatttgca gggtgaatgg gtgaggctgg atgttcgaaa
     2161 ctttacacgg tcgagggctg tgactcagcg tggcggagaa attcgggggg cgatatcgag
     2221 cagagtttag cgcctgaacg aatggtggat cggtccccca tattcatacc accgtagtga
     2281 taaattgctt taataaaaac ctataattat ttgatattta acagaaagat agtttcattt
     2341 ttatgatcta taaatcagtt tagaagagga ttgtaagcat ttgttttaaa aagaaaaatt
     2401 cgatagatgg cggcgattct taaagtagta catcaagtct taatgatgag ctcgatgggc
     2461 gtcttaacct gatcgggcag tcagcagcgg atcaagatta gaaatctact tcatgttaat
     2521 tcttaacaag agaaatagtt cataacctat tgattatatt gccaacaaat ggattttgtt
     2581 gttttggatt agatatgcct ggtatgtaat tgatttttaa cgaacttata ccgaatttct
     2641 gtcaaatcca ggctcaaaac aagatgacat atcctgtgta gacccttgat ctgcaagcgt
     2701 atccttcgaa catccccgat tcgccaactt ccccacacgc caccttcgac cca
//
LOCUS       DATGBK010000938         1768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_219579, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000938 DATGBK010000000
VERSION     DATGBK010000938.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219579"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(331..597)
                     /locus_tag="VKJ77_13060"
     CDS             complement(331..597)
                     /locus_tag="VKJ77_13060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011875432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HMC46245.1"
                     /translation="MSKREKTTAEIEHEFDSAEVPSGNIKAMRPFSELLEKKRMGRPP
                     KDNPKVLVTSRYDADIIERFRAKGDGWQTRMNDALRTYLMEHEL"
     gene            740..1759
                     /locus_tag="VKJ77_13065"
     CDS             740..1759
                     /locus_tag="VKJ77_13065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC46246.1"
                     /translation="MAKVPTIRDVAELADVSKATVSRYLNGSLALPPETAKRVDDAVI
                     ALNYRQNSLARRLSLGSSETIGLAMPEVANPFFAELADAVEEAASESGYGLALCITRN
                     KLERETLYLRWLDTRHLDGLIFATNRPDDGSLRSLIGERANIVLVDEDVPGTDVPKVF
                     VDNVEGSYLATRHLLDAGHRRIAHVTGPETLFTVQERLEGYRRALAEAQVPFDTNLVR
                     YGAYDRRFGRAAGADLIACAQPPTALFATSDYIAVGVLDALRERALDVPGYMSIVGFD
                     DMEFASLLMPPITTVRQSAAELGRTGVALLVAMLTGKATSSPTVRRLPVELIERASVG
                     PPRAD"
BASE COUNT          319 a          575 c          517 g          357 t
ORIGIN      
        1 ttcaactgcg gcgtgccttc ttacctgctc aaggacggac agttggaacg cgacgtcggg
       61 ccgcgcctgt tgtcgatggt gcgcagtgtt gaaggtgcga tggggatttt ttagggtagc
      121 ggctcggcga ggcgattggg cgcaggcaag tccgttggca gtgcgtgacg ttacgaaacg
      181 gcttgtcccc gacaggcctc ggatcgatcc cgtcagtagc gcggtaggtg ttcgcgacag
      241 cgatttttcc actcaccgtg gcgatcaact attcaaccga tccgctcgcc ccaacgaaac
      301 acgcaaggga atcggccgaa taagtccacg ctatagctcg tgctccatca ggtacgtgcg
      361 cagcgcatcg ttcatgcgtg tttgccaccc atcgcccttg gccctgaacc gctcgataat
      421 gtcggcgtcg taccggctgg ttacaagcac cttcgggttg tctttgggtg gacggcccat
      481 gcgctttttt tccagcaatt ccgaaaacgg ccgcatcgcc ttgatgttgc cgctcggcac
      541 ttcggcggaa tcaaactcat gttcgatttc cgcagtggtt ttttcacgct tgctcatagt
      601 ctttcacctt aatagcaatc tttcgccggt tcgaatgtga tttccattca gatattgtaa
      661 taacagaaag tctagctgct gatccagcaa caaaatcccc cgcgttacac tacgctccac
      721 tccagcgggg actcctcaag tggcaaaagt acccacaatt cgcgatgtcg ccgaactggc
      781 ggatgtatcg aaggcaaccg tttcgcgtta cctgaacggc agcctcgcgc tgccgcccga
      841 aacggccaag cgcgtcgacg atgccgtcat cgcgctcaac taccgccaga acagtctggc
      901 ccggcgcctg agtctcggca gcagcgagac tattggccta gccatgccgg aggtcgccaa
      961 tccgttcttc gcggagctcg cggatgccgt ggaggaagcc gcctccgaaa gcggctatgg
     1021 cctcgcgctc tgcatcacgc gcaacaagct cgagcgtgaa acgctttatc tgcgctggct
     1081 cgatacccgc cacctcgacg gcctgatctt cgcgaccaat cgcccggacg acggctcgct
     1141 gcgcagcctg attggcgagc gcgccaatat cgtgctggtc gacgaggacg tgccgggtac
     1201 cgacgtgccc aaggtgttcg tcgacaacgt ggaagggagc tatctggcga ctcgccattt
     1261 gcttgacgcg gggcatcggc ggatcgcgca cgtgaccggt cccgaaacgc tgttcaccgt
     1321 gcaggaacgg ctggaaggct accgccgggc gctggccgaa gcacaagtcc ccttcgatac
     1381 caaccttgta cgttacggcg cctacgaccg ccgcttcggg cgcgccgcgg gtgccgacct
     1441 gatcgcgtgc gcgcaaccgc ccaccgcgct gttcgccacc agcgactaca tcgcggtcgg
     1501 cgtgctcgac gcattgcgcg aacgcgcgct ggacgtgcct ggctacatgt cgatcgtcgg
     1561 cttcgatgac atggaattcg ccagcctcct gatgccgccg atcaccacgg tgcgccagtc
     1621 agccgccgag cttggccgga ccggcgtcgc cctgctggtc gcgatgctca ccggcaaagc
     1681 cacctcgtcg cccaccgtgc gccgcctgcc ggtcgagttg atcgaacgcg catcagtcgg
     1741 tccgccgcgc gccgattagc cttcgcct
//
LOCUS       DATGBK010000939         1508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289155, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000939 DATGBK010000000
VERSION     DATGBK010000939.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289155"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /locus_tag="VKJ77_13070"
     CDS             <1..635
                     /locus_tag="VKJ77_13070"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HMC46247.1"
                     /translation="PVKEMIDAVHSYGGIVLHDVINLRHAEKALEAGVDGLILVAAGA
                     GGHAGMTSPFALVGEVRRIFDGPIALSGAIANGGSILAAQAMGADFAYIGTRFIATRE
                     AHALEDYKTAIVGSKAADIIYTNLFTGVHGNYIRQSILNAGLDPDALPASDKAAMNFG
                     DSAIKAKAWKEIWGAGQGVGLMDDVPTVAELVSRLKHEYDDAKTRLGISR"
     gene            complement(770..>1508)
                     /locus_tag="VKJ77_13075"
     CDS             complement(770..>1508)
                     /locus_tag="VKJ77_13075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004537788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC46248.1"
                     /translation="IESPYGTFTTGRLTTQLFVSTILFNPFIDSYTFSPMVYHVFLGQ
                     STFPTYTTDQGVVGDSGWDNSVQYTTPDFSGLSGSAMYSFGNQAGQNGAKKYSAQFLY
                     FHGPFAATGVYQYVNFSATPGDLTSFVAGYKSQSVGQLGASYDMKFVKFFAQYMYTHN
                     DIDPGSFHVNTGQGGVTIPVGVGSVMASYAYSRSNGGLDQTHKSWALGYDYPLSKRTD
                     VYAAYLNDKYTSMSSGDTYGVGIRTKF"
BASE COUNT          314 a          440 c          460 g          294 t
ORIGIN      
        1 cgccggtcaa ggagatgatc gacgccgtgc acagctacgg cggcatcgtg ctgcacgacg
       61 tgatcaattt gcgacacgcg gagaaggcgc tggaagcggg cgtcgacggc ctgatcctgg
      121 ttgcagccgg tgccggcgga cacgcgggca tgacgtcacc gttcgcgctg gtaggcgaag
      181 tgcggcgtat tttcgatggc ccgatcgcgt tgtccggcgc cattgccaac ggcggctcga
      241 ttctcgccgc gcaagccatg ggtgcggatt tcgcgtatat cggcacacgc tttattgcca
      301 cgcgcgaggc gcatgcgctg gaagactaca agaccgcgat cgtgggatcg aaggctgcag
      361 acatcatcta tacgaacctc ttcaccggcg tgcacggtaa ctacattcgc cagagcattc
      421 tcaatgccgg actcgatccg gacgcgctgc cggcatcgga taaagcagcg atgaatttcg
      481 gcgactcggc gatcaaagcc aaagcgtgga aagaaatctg gggcgcggga caaggcgtcg
      541 gactgatgga cgacgtgccg acagtggcgg aactcgtgtc gcggctcaag cacgaatacg
      601 acgatgcaaa aacgcgcttg ggtatttcgc gataaagcag tcctgttggc ggctggttcg
      661 tgagtctctt tggatcgctt gcgcgcctgc caacaaaaac gccgcccttg gcttcagggg
      721 cggcgttttg cgttgccggg cgccagcgca taacgcctga tgtcttcgct cagaacttcg
      781 tgcgaatgcc gacgccgtac gtatcgccgc tcgacatgct cgtgtacttg tcgttcaggt
      841 acgcggcata gacgtcagtg cgcttcgaca gcggatagtc gtagccgagc gcccagctct
      901 tgtgggtctg gtcgaggccg ccgttgctgc gcgaatacgc gtacgacgcc atcaccgaac
      961 ccacgcccac cggaatggtc acgccgccct ggcccgtgtt cacgtggaac gaacccggat
     1021 cgatatcgtt gtgcgtgtac atgtactgcg caaagaactt cacgaatttc atgtcgtacg
     1081 acgcgcccaa ctggcctacg ctctggctct tgtaaccggc cacgaacgac gtcaggtcac
     1141 ccggcgttgc gctgaaattc acgtactgat acacgccggt cgccgcaaac gggccgtgga
     1201 aatacaggaa ttgcgcgctg tatttcttcg cgccgttttg tccggcctgg ttgccgaagc
     1261 tgtacatcgc gctgcccgac aaaccactga aatcaggcgt ggtgtactga acggaattgt
     1321 cccaacccga atcgccaaca acaccctggt ccgtcgtgta ggtcgggaac gtgctctgac
     1381 cgaggaacac gtgatacacc atcggcgaga acgtgtacga atcaataaac gggttgaaca
     1441 gaatggtcga tacaaacagc tgcgtggtca gccgaccggt ggtgaacgta ccgtatggcg
     1501 actcgata
//
LOCUS       DATGBK010000940         2009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_80604, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000940 DATGBK010000000
VERSION     DATGBK010000940.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80604"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1247)
                     /locus_tag="VKJ77_13080"
     CDS             complement(<1..1247)
                     /locus_tag="VKJ77_13080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018431847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46249.1"
                     /translation="MNSDVIEVEQVLDQTHRPMFHFVLLLLCGLCLVIDGFDAQAMGY
                     VAPSVIGEWHVSKASLGPVFSASLFGMLIGALGLSVLADKIGRRPVLIVSMLCFGLLM
                     LATPFVTTISALITVRFVTGIGLGCIMPNAMALVGEFSPQAHRVKRMMLVSCGFTLGA
                     ALGGFVSAWLIPNYGWRSVFYLGGVVPLLLVVAMTMSLPESLQFLVLKGHKERARAWL
                     ARFDPTLRIDAAATIVVREKNNGGAPVAELFRGGRTAVTLILWSISFMNLIDLYFLSN
                     WLPTVMRDAGYSPGTAVIVGTALQTGGVLGTLLLGWFIERFGFVRVLFVCFFFAAIFV
                     GMIGTVAHALPWLLIVVFAGGFCVVGGQPAVNALAGHYYPTSVRSTGIGWSLGIGRIG
                     SVIGPLVGGQLIALNWSNASLFHA"
     gene            complement(1716..>2009)
                     /locus_tag="VKJ77_13085"
     CDS             complement(1716..>2009)
                     /locus_tag="VKJ77_13085"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HMC46250.1"
                     /translation="GVLIDWIHEAGREIAAANMLGVVMNPGAFTHTSIALHDAIKGAS
                     VTLIELHISNVHARESFRHHSYISPAARGIIVGLGIKGYALAIDALVQVSQVK"
BASE COUNT          488 a          625 c          557 g          339 t
ORIGIN      
        1 gcgtgaaaca gcgacgcgtt ggaccagttc agcgcgatca actgaccgcc gaccagcggc
       61 ccgattaccg agccaatgcg cccgataccc aggctccagc cgattcccgt cgaacgcacc
      121 gacgtggggt aatagtgccc ggcgagcgca ttgaccgccg gctggcctcc gaccacgcag
      181 aagccgcccg cgaacacgac gatcagtaac cacggcaatg catgcgccac ggtaccgatc
      241 atgccaacga agatggcagc gaagaagaaa catacgaaca gcacccggac aaagccgaag
      301 cgctcgataa accagccaag cagcaaggtg ccgagcacgc cgcccgtctg caatgccgta
      361 ccaacaatca ccgcggttcc cggtgaatag ccggcatcgc gcatgacggt cggcagccaa
      421 ttcgacagga agtacaggtc gatcaggttc atgaagctga tcgaccacag aatcagcgtc
      481 accgccgtac ggcccccgcg aaacaactcg gcaacaggtg caccaccgtt gttcttttcg
      541 cggaccacga tggtcgccgc cgcgtcaatc cgtagcgtcg ggtcgaaccg cgcgagccat
      601 gcgcgtgcac gttctttgtg acccttcagc accaggaact gcagggactc gggcaagctc
      661 atcgtcatgg cgacaactag cagaagcggc accacgccgc ccagataaaa caccgaacgc
      721 cagccgtagt tcggaatcag ccatgcgctg acaaagccgc ccagcgccgc gccgagtgta
      781 aatccgcatg aaacaagcat cattcgcttc acgcgatgcg cttgcggact aaactcaccg
      841 acgagcgcca ttgcgttcgg catgatgcaa cccaggccga tacccgtgac aaagcgcact
      901 gtaatcagtg cggagatcgt ggtgacgaaa ggggttgcaa gcatcagcaa gccaaagcag
      961 agcatcgaca cgatcaacac cggtcgccgc ccgatcttgt cggcgagtac cgagaggccc
     1021 agcgcaccaa ttagcatgcc gaacagactc gcgctgaaca cgggaccgag cgacgccttc
     1081 gaaacatgcc attcgccgat aacgctcggg gccacatagc ccatcgcctg ggcgtcgaaa
     1141 ccgtcgatca cgaggcataa gccgcacagc aaaagcaaca cgaagtggaa catcggccgg
     1201 tgtgtttggt cgagcacctg ctctacttcg atcacgtcgg aattcatgaa tggtcctcgc
     1261 ttgtgcgctc acaccatgcg agcgatggat cgcttcgcgc ggtgtattag tgccgcttaa
     1321 tccggttctt aagggagaga tcaacgtcgc gctgacccgt gatttcgcga gttgcggcat
     1381 acccgacgca tgccgttctg cgacgcccat tgcagctccg gacaacgcct ccggaattac
     1441 gaattgtaca attcgtttcc caatagtgaa tttacgttaa cccttattcg actttgattg
     1501 ctctttgaat gccagtcgaa aattcagatc gagcgacggc gcacgtgccg aatccaacgt
     1561 cgggaatgca ccaggattgc ttgtgacgat gaaatatcag acgaaaggcc cttcgtttgc
     1621 gcggtgcaaa cgaagggcct gattgatcgg cagaaggcgc tcagacgcgc gggaaaatgg
     1681 ttgagggagc gtgaacttgc agcgactcca tccgcctatt taacctgcga cacctgcacc
     1741 aaagcatcga tggcaagggc ataacccttg atgcccagac cgacgatgat cccgcgcgct
     1801 gcgggagaga tatacgagtg gtgacgaaac gattcccgcg cgtggacgtt agaaatatgc
     1861 agctcgatca gcgtgacgct cgcgcccttg atggcatcgt gcaaggcgat cgacgtgtgc
     1921 gtgaaagcgc ccgggttcat cacgaccccc agcatattgg ccgccgctat ctcgcggccc
     1981 gcctcatgga tccagtcgat cagcacacc
//
LOCUS       DATGBK010000941         2223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_312241, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000941 DATGBK010000000
VERSION     DATGBK010000941.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312241"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            204..>2223
                     /locus_tag="VKJ77_13090"
     CDS             204..>2223
                     /locus_tag="VKJ77_13090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004629 - phospholipase C activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase C, phosphocholine-specific"
                     /protein_id="HMC46251.1"
                     /translation="MNLKSRRDFLRAAAQAAGSATALGIVPAGIRNALAIPANNQHGS
                     IKDVEHIVVLMQENRSFDHYFGTLQGVRGFGDTRAVQLPNGQSVFNQPIAGGLGEVLP
                     FRPSAPDLGNQFIQDLPHDWTSGKGAYDQGRYDQWVPYKGTTTMAYLTRQDIPFHYQL
                     ADAFTICDAYHCSINSSTDPNRYYMWTGWVGNDGNGGGPVIDNAEVGYSWSSYPEVLQ
                     NAGISWKIYQDIGTGLDANGSWGWTSDAYIGNYGDNALLYLNQYRNAQPGNPLYDKAR
                     TGTNAAAGDGYFDILKRDVQNNALPQVSWIVAPEAFSEHPNWPANYGAWYVDQVLQIL
                     TSNPAVWSKTVLLINYDENDGFFDHVVPPFPPSSAANGKSTVSTVNEIFPGSSSYQAG
                     PYGLGTRVPMLVVSPWSKGGYVCSELFDHTSVIQFIEKRFGSRANVTESNITPWRRAI
                     CGDLTSAFNFKNPNAAFPTLPDTSGYAPTQQIRHPDYVPVPPAVQAVPKQEPGVRPAR
                     ALPYEFFVHAHTNTGKGVTFDFINTGDAGATFLVYTANSPTAPSCYTVEAGKRLQDQF
                     PLTAANTYDFIVYGPNGFLRRFTGTAVQQHWWNDKQAQPEVAEGYDVANGNLQLRLKN
                     LGTTSCQFSIANAYTPGTVITRKVRGGDTESLYLDLRGSYGWYDLSVTT"
BASE COUNT          469 a          725 c          621 g          408 t
ORIGIN      
        1 gggatcctcg gacatacaac gctgggccct gcagcaaacc cagccggcaa cagcgacgtc
       61 cagtcttacc caagcacccc cgctcgccgc cgcttccgat cccttgttgc ccctggtaat
      121 tcacgaggcc gagtaacaca caagcgacac gaaggcggcc ggcgagcccg atcaagcttt
      181 ccccccacga ccgacagaga cccatgaact taaaaagccg acgtgacttt ctcagggctg
      241 ccgcacaggc agcaggttcc gccaccgcac taggtatcgt gccggctggc atccgcaatg
      301 cactcgccat acccgccaat aaccagcacg gcagcatcaa ggacgtcgaa catatcgtcg
      361 tgctgatgca ggaaaaccgc tccttcgacc attacttcgg cacgctccag ggcgtgcgcg
      421 gtttcggcga tacccgcgcc gtgcagcttc cgaatggtca gtccgtgttc aaccagccca
      481 ttgctggggg actcggcgaa gtattgccgt ttcgccccag cgcgcccgat ctcggcaacc
      541 agttcatcca ggatttgccg cacgactgga cctcgggcaa gggtgcttac gaccagggcc
      601 gttacgatca gtgggtgcca tacaaaggca cgaccacgat ggcgtatctc acccgccagg
      661 acattccgtt ccactatcag ctcgccgacg ccttcaccat ttgcgacgcg tatcactgct
      721 cgatcaactc atcgacggat ccgaaccgct attacatgtg gaccggctgg gtgggcaacg
      781 acggcaacgg cggcggtccg gtgatcgaca atgccgaagt cggctatagc tggtcgtcgt
      841 atccggaagt gcttcagaac gcgggcattt cgtggaagat ctatcaggac atcggcaccg
      901 ggctcgacgc caacggctcg tggggctgga ccagcgacgc gtacatcggc aactatggcg
      961 acaacgccct gctctacctg aatcagtatc gcaatgcgca gcccggcaat ccgctgtatg
     1021 acaaggcgcg taccggcacg aacgcggcag ccggcgatgg ttatttcgac atcctcaagc
     1081 gcgacgtgca gaacaacgcg ctgccgcagg tctcatggat cgtcgcgccc gaagcgttct
     1141 ccgagcatcc gaactggccg gctaactatg gcgcgtggta cgtcgaccag gtgctgcaga
     1201 tcctgacgtc gaatccagcg gtgtggagca agacggtgct gctgatcaac tacgacgaaa
     1261 acgacggttt cttcgatcac gtcgtgccgc cgttcccgcc ttcttccgcc gctaatggca
     1321 aatcgacggt cagcaccgtc aatgagatct tcccgggcag cagcagttat caggcgggtc
     1381 cctacggcct tggaacacgg gtgccaatgc ttgttgtctc gccctggtcg aaaggcggtt
     1441 atgtgtgctc ggaactgttc gaccacacct cagtgattca atttatcgaa aagcgttttg
     1501 gttcgcgtgc aaacgtgacc gaatcgaaca tcacgccgtg gcgccgggcg atctgcggcg
     1561 acctgacgtc cgcgttcaat ttcaagaacc cgaacgccgc atttccgacc ttgccggaca
     1621 cgagcggtta cgcaccaacg caacagattc gtcatcctga ctatgtgccg gtgccacctg
     1681 cagttcaggc tgtgccgaaa caggaacccg gcgtgcgccc cgctcgcgcg ttgccctacg
     1741 agttctttgt tcacgcacac acgaatacgg gcaagggcgt caccttcgac ttcatcaaca
     1801 caggcgatgc cggcgcgacc ttcctcgtgt acacggccaa cagcccgacc gcgccgagct
     1861 gctataccgt cgaagccggc aaacgcctgc aggatcaatt cccgttgacc gccgccaata
     1921 cctacgactt catcgtgtac ggtccgaacg gtttcctgcg tcgctttacc ggcacggcgg
     1981 tccagcagca ctggtggaat gacaagcagg cgcagccgga agtggccgaa ggttacgacg
     2041 tcgccaacgg caacctgcaa ttgcgcctga agaacctggg cacgacgagt tgccagttca
     2101 gcatagcgaa cgcctacacg cccggcacag ttatcacgcg caaagtgcgt ggcggtgaca
     2161 ccgaaagcct ctatctcgac ctgcgcgggt cgtatggctg gtacgacctg agcgtcacta
     2221 ctg
//
LOCUS       DATGBK010000942         1811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_265957, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000942 DATGBK010000000
VERSION     DATGBK010000942.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265957"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..820)
                     /gene="gshB"
                     /locus_tag="VKJ77_13095"
     CDS             complement(<1..820)
                     /gene="gshB"
                     /locus_tag="VKJ77_13095"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HMC46252.1"
                     /translation="MSLKIAVQMDPIQRINIKGDSTFALLLEAQKRGHQLSYYTPDRL
                     ALLNGRLFTTVESLSVRDKAGDHFTLDEPRRVELTQFDVILLRQDPPFDLAYVTTTHL
                     LERIHPKTLVVNDPAHVRNAPEKFFVTEFPDLMPPTLLTRDLAEIKAFRAEHGDIVMK
                     PLYGHGGGAVFRITRDDLNFGSLYDMFAVTFREQWVVQKFLPAVKQGDKRILLVDGEF
                     AGAVNRIPAADDLRSNMVRGGSPAATDLTTREREICERIGPALRQRGLLFVGIDV"
     gene            955..>1811
                     /locus_tag="VKJ77_13100"
     CDS             955..>1811
                     /locus_tag="VKJ77_13100"
                     /inference="COORDINATES: protein motif:HMM:NF012876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HMC46253.1"
                     /translation="MPKLSIAAKLYAIFALMATTTIALSVVAVTAARQHAALTDEFES
                     ANAGTWNVERVNGLIYAVVMESRGVYMSTNMQTSKIYADGILKFNKQIAKVVVDWKKS
                     VRGDDAELFVQFSKRIAQFIDFRRELARLGTEVSPAAGREWGDNDANRSVRKALNEDL
                     DKLTEIYSKRATRVYSEIDTGIEKTAMWLSLLACFAVLLATVGAWVISRNVAKPIADI
                     TRVTEAVAAGEASVAIPFSERSDEFGALARSIGVFQRAMRSNEELNRTVRIDAEMRTQ
                     RQEQMSNEIS"
BASE COUNT          349 a          536 c          588 g          338 t
ORIGIN      
        1 tcacgtcgat gccgacgaac aataggccgc gctgacgtaa ggccgggcca atgcgttcgc
       61 agatttcccg ctcgcgtgtg gtcaggtcgg tcgccgccgg cgagccgccg cgcaccatgt
      121 tggagcgcag atcgtcggcg gccggaatgc ggttgaccgc gccggcgaac tcgccgtcca
      181 ccagcaaaat gcgcttgtcg ccttgcttta cggcggggag gaatttctgc accacccatt
      241 gctcgcggaa ggtgaccgcg aacatatcgt agagcgagcc gaaattgaga tcgtcgcgtg
      301 tgatgcggaa aaccgcgccg ccgccgtggc cgtagagcgg cttcatcacg atgtcgccgt
      361 gctcggcgcg gaacgccttg atctcggcga ggtcgcgggt cagcagcgtc ggcggcatca
      421 ggtcggggaa ttcggtgacg aaaaatttct ccggcgcgtt gcgcacatgc gccggatcat
      481 tgaccaccag cgtcttgggg tggatgcgct cgagcaggtg ggtggtggtc acataagcga
      541 ggtcgaaggg cgggtcctgg cgcagcagga tcacgtcgaa ttgcgtcaac tccacgcgcc
      601 gcggctcatc gagcgtgaaa tggtcgccgg ccttgtcgcg cacgctcaaa ctctcgaccg
      661 tggtgaacag gcggccgttg agcaaagcca gccggtcggg ggtgtaatag gaaagctggt
      721 gaccccgctt ttgcgcctcc agcagcaggg cgaaggttga atcgcccttg atattgatcc
      781 gctggatcgg atccatctga accgcgattt tcaggctcat gtcggggctc ttgtcgggcc
      841 ttttggggac tttttaggca gcgagaagct taaggaaaac aaaccgttaa catattaccg
      901 ccagtatagc cgcttcgggg acctttattt caaggtgggg ggccgctttt gactttgccg
      961 aagctttcga ttgccgccaa gctctatgcg atcttcgccc tgatggccac cacgaccatc
     1021 gcgctgtcgg tggtcgcggt gacggcggcg cgccagcacg cggcgctgac cgacgaattc
     1081 gaatccgcca atgccggcac ctggaacgtc gagcgggtga acgggctgat ttatgccgtg
     1141 gtgatggaat cgcgcggcgt ctacatgtcg accaatatgc agacgtcgaa aatctacgcc
     1201 gacggcattc tcaaattcaa caagcagatc gccaaggtgg tggtggactg gaagaaatcc
     1261 gtgcgtggcg acgacgccga actgtttgtt cagttctcta aacgcatcgc gcagttcatc
     1321 gacttccgcc gcgaactggc gcgcctgggc accgaagtca gtcccgccgc cggccgcgag
     1381 tggggtgaca acgacgccaa ccggtcggtg cgcaaggcgc tcaacgagga tctggataag
     1441 ctcaccgaga tttattccaa gcgcgccacg cgtgtctact cggaaatcga caccggcatc
     1501 gaaaagaccg ccatgtggct gagcctgctc gcgtgcttcg cggtgctgct ggcgaccgtc
     1561 ggtgcatggg tgatttcgcg caacgtggcc aagccgatcg cagacatcac gcgcgtcacc
     1621 gaggcggtcg ccgccggcga ggcttccgtg gcgattccgt tcagcgagcg cagcgacgag
     1681 ttcggcgcac tggcgcgctc gatcggcgta ttccagcgcg ccatgcgcag caacgaggaa
     1741 ctcaatcgca cggtgcgcat cgacgccgaa atgcgcacgc agcgtcagga gcagatgtcg
     1801 aacgagatct c
//
LOCUS       DATGBK010000943         4267 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_219666, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000943 DATGBK010000000
VERSION     DATGBK010000943.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4267
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219666"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..866
                     /locus_tag="VKJ77_13105"
     CDS             <1..866
                     /locus_tag="VKJ77_13105"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HMC46254.1"
                     /translation="RWAAEIDELMKQSGGGKRIAIESATSAAAFALQARGYQVFDAQE
                     PLERARAIKVPNEIKMIRASLRAAEEGVRKLEAALVPGISENELWSHLHQHIIATDGD
                     YIETRLISSGPRTNPWFQESSPRKIQSGELVGLDTDVVGRFGYYADFSRTFLCGDVQA
                     TAAQKNLYQLAYEQIHSNMENVRAGTTFQEFIARAWKIPEPYRARRYFALAHGVGMTG
                     EYPYIVHREDNEAKGYDGVIEPGMTLCIESYIGHEAGGEGVKLEEQVYIRDDGRVELL
                     SDYPFEARLLA"
     gene            927..1964
                     /locus_tag="VKJ77_13110"
     CDS             927..1964
                     /locus_tag="VKJ77_13110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007745950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46255.1"
                     /translation="MLKRFLKAGISALVAVTATAGTAHAAGTFCSSGKTVNFAGITWE
                     SGAFATEVLRQILEKGYGCATDVVPGSTAATETALASNDVQVWAEQWTGRSEITSKAV
                     AAGKVKLVGDTLPGGTNEGWFVPEYVIKGDASRNIKASAPALVSVTDLPKYKELFADD
                     EEPEKGRFLNCPTGWDCERVNTRLLKVLGLDASYTNFHPGTGAALDASIESAYQRGKP
                     LVFYYWGPAALMAKYKFVQLKMPPYNDACWKTLRDESSTKQCASSYMVSHVTVGVSTP
                     FSEAEPQAIEMFSKVSFPMDFLNSTILEMTSKKIDGSAMATTFLRTHPEMWKTWVPAD
                     VAAKVQAKLGT"
     gene            2016..2972
                     /locus_tag="VKJ77_13115"
     CDS             2016..2972
                     /locus_tag="VKJ77_13115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline/glycine betaine ABC transporter
                     permease"
                     /protein_id="HMC46256.1"
                     /translation="MTSIFPHLSLADPINDKVALLVQNYGDAFHSFSLVVLKYLLVPL
                     ESGLRIMPPWLLLILAGLLAWHATRKLSLAALFVLLLYAIGAFGLWDKLMQTLALMLV
                     ATVLSIVLGIPLGILCSQNRWVRRGLLPVLDVMQTLPSFVYLIPVLMLFGLGKVPAIF
                     ATVIYSLPPLIRLTDLGIRQVDGDVVEAARSFGTTRWQMLIGVQLPLARPSIMAGINQ
                     TTMMSLSMVVIASMIGSRGLGEDVLAGIQTLDVGKGMQAGIAIVILAIVIDRISQGYG
                     QERRARMALSANRRARVQARQSARSAGLGEPEVAGDTASRHV"
     gene            3006..3830
                     /locus_tag="VKJ77_13120"
     CDS             3006..3830
                     /locus_tag="VKJ77_13120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009769519.1"
                     /note="Members of the family are the ATP-binding subunit
                     of ABC transporters for substrates such as betaine,
                     L-proline or other amino acids, choline, carnitine, etc.
                     The substrate specificity is best determined from the
                     substrate-binding subunit, rather than this subunit, as it
                     interacts with the permease subunit and not with substrate
                     directly; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="betaine/proline/choline family ABC transporter
                     ATP-binding protein"
                     /protein_id="HMC46257.1"
                     /translation="MTAIRVSNVYKIFGPSMTHARVIDMLRHGASKADVLADNGCNVG
                     LNNINLNIEAGQIFVIMGLSGSGKSTLVRHFNRLIDPSAGEIVIDGENILSLNAAGLR
                     EFRRHRVSMVFQNFGLLPHATVLENAAYALRVRGERHDVANQKARTWLGKVGLDGYGD
                     KFPDELSGGMRQRVGLARALAADTEVLLMDEAFSALDPLIRTEMQDQLLELQRTLNKT
                     IVFITHDLDEALRLGTQIAILRDGELVQQGTPEDIVRFPANDYVRRFVERRAERVA"
     gene            4000..>4267
                     /locus_tag="VKJ77_13125"
     CDS             4000..>4267
                     /locus_tag="VKJ77_13125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC46258.1"
                     /translation="MKKQAICMTLSCLFVAGAHAQSSVTLYGVIDEGFDYTNNVNGNK
                     AYEMQSGYAQGSRWGLKGGEDLGGGVKAIFTLENGFNLNNGRLGQ"
BASE COUNT          889 a         1221 c         1349 g          808 t
ORIGIN      
        1 agcgctgggc cgccgagatc gatgagctga tgaaacaaag cggcggcggc aagcgcatcg
       61 cgatcgagag cgcgacgtcc gcagcggcgt tcgcgttgca ggcacgcggc tatcaggttt
      121 tcgacgcaca ggagccgctc gaacgcgccc gcgccatcaa ggtgcccaac gagatcaaga
      181 tgatccgcgc ttcactgcgt gcggccgaag aaggcgtgcg caagctggaa gcggcactgg
      241 tgccgggcat cagcgagaac gagctgtggt cgcatctgca tcagcacatc attgcgaccg
      301 atggtgacta cattgagacg cgcctgatca gttcgggacc gcgtaccaat ccgtggttcc
      361 aggaaagcag cccgcgcaag atccagtcgg gcgaacttgt cgggcttgat acggacgtgg
      421 tcggccgctt cggctactac gcggattttt cgcgcacgtt cctgtgcggc gatgtgcagg
      481 cgacagccgc gcaaaaaaat ctctaccagc tagcgtacga gcagattcat tcgaacatgg
      541 agaacgtgcg cgcaggcacg accttccagg agttcattgc ccgggcgtgg aagattcccg
      601 agccataccg cgcacgccgc tatttcgcgc tcgcgcatgg ggttggcatg acgggtgagt
      661 atccgtacat cgtgcataga gaagacaacg aggccaaggg atatgacggc gtgatcgagc
      721 cgggcatgac cctttgcata gaaagctata tcggacacga ggccggcggc gagggcgtga
      781 agctggaaga gcaggtttat attcgcgacg acggccgggt cgaactgctc tcggattatc
      841 cgttcgaggc gcggctgctg gcctgatcct ctcctgttgc actcatctat tcaaacaacc
      901 cccgaactcc ccataggtgc aagacgatgc tcaaacgatt cttgaaagca ggcatttcgg
      961 cgctggtcgc ggttacggct accgccggta cggcacatgc cgcagggact ttctgcagct
     1021 cgggcaagac cgtgaacttt gcgggcatta catgggagag cggcgcgttt gcgaccgaag
     1081 tgcttcggca aatccttgaa aagggctacg gctgcgccac ggatgtcgtg cccggcagca
     1141 cggccgccac tgagactgcg ctggcaagca acgacgtgca ggtctgggcc gagcaatgga
     1201 ccggccgcag tgagattacg tcgaaagcgg tcgctgccgg caaggtcaag ttggtaggcg
     1261 acacgttgcc gggcggcaca aacgagggct ggttcgtgcc cgaatacgtg atcaagggcg
     1321 acgcgtctcg caacatcaag gccagcgcgc cggccctggt ttcggtcacc gacctgccga
     1381 aatacaagga gctgtttgcc gatgacgaag aaccggaaaa gggccgtttc ctcaactgcc
     1441 cgacaggctg ggactgcgaa cgggtgaata cgcgtttgct caaggtgctg ggtctcgatg
     1501 cgtcgtacac caatttccat ccgggcacag gcgcggcgct tgatgcatcg atcgaatcgg
     1561 cgtatcagcg cggcaagcca ctggtgtttt attactgggg cccggctgcg ttgatggcga
     1621 aatacaagtt cgtccaactc aagatgccgc cgtataacga tgcctgctgg aagaccctgc
     1681 gtgatgaaag cagcacgaag caatgtgctt cgtcgtacat ggtttcgcac gtgacggtgg
     1741 gtgtctcgac gcccttcagc gaagccgagc cgcaagccat cgagatgttc tcgaaagtca
     1801 gctttccgat ggacttcctg aacagcacga ttcttgaaat gacatcgaag aagatcgacg
     1861 gctcggccat ggccaccacg ttcctgcgca cgcaccccga gatgtggaag acctgggtgc
     1921 cagccgacgt agcggccaag gtgcaggcca agctgggcac gtaaaaacgg gcccctttcc
     1981 actccgcgcg acctttctca agacgagtga accccatgac gtccatcttt ccgcatctat
     2041 cgcttgccga cccgatcaac gacaaggtcg cattgctggt ccagaactat ggcgatgcct
     2101 tccactcgtt cagtctggtc gtgctgaaat acctgctagt gccgctggaa agcggcttac
     2161 gaatcatgcc gccatggctg ctgttgatcc tcgcgggtct gctcgcatgg cacgccacac
     2221 gcaagctctc gctggcagcg ttgttcgtac tgctgctcta cgcaatcggc gcgttcgggt
     2281 tgtgggacaa gttgatgcag acgcttgcgc tgatgctggt cgcaaccgtg ttatcgatcg
     2341 tgctgggcat cccgctcggc atcctgtgct cgcagaaccg atgggtgcgc cgggggctgt
     2401 taccggtgct cgacgtgatg cagacgctgc ccagcttcgt gtacctgatc ccggtgctga
     2461 tgctcttcgg gctgggcaag gtgccggcca tcttcgccac ggtgatctat tcgctgccgc
     2521 cactgatccg gctcacggac ctgggtatcc ggcaggtcga cggtgacgtg gtggaagccg
     2581 cacgctcttt cggcacgaca cgctggcaga tgctgatagg cgtgcagttg ccgctcgcgc
     2641 ggccgagcat catggccggt atcaaccaga ccaccatgat gtcgctgtcc atggtcgtga
     2701 ttgcatcgat gatcggttcg cgaggcctgg gcgaagacgt gcttgccggc atccagacac
     2761 tcgatgtcgg caagggcatg caggcgggta tcgccattgt gatcctggcg attgtcatcg
     2821 accggatttc gcagggttac ggtcaggagc ggcgtgcacg catggcgctg agcgcgaata
     2881 gacgggcacg cgtgcaggct cgccagagcg cgcgcagcgc cggtctcggc gagccggaag
     2941 tggcgggcga caccgcatca cgtcacgtct gacccccatc ccctcttctt gcgcggagcg
     3001 cgaacatgac agctatccga gtcagcaacg tctacaagat cttcgggccg tcgatgaccc
     3061 atgcacgcgt tatcgacatg ctcaggcacg gcgcgtcgaa ggcggacgtg ctcgccgaca
     3121 acggctgtaa cgtcggcctc aacaacatca acctgaatat cgaggcgggt cagatctttg
     3181 tgatcatggg cttgtccggt tccgggaagt ccacgctcgt gcgccacttc aaccggctga
     3241 tcgatccgag cgcgggcgag atcgtgatcg acggggagaa catcctgtcg ctcaacgcgg
     3301 cggggctgcg cgagtttcgg cggcatcgcg tcagcatggt gttccagaat ttcggcctgt
     3361 tgccgcatgc aacggtgctg gagaacgcgg cgtacgcatt gcgtgtaaga ggcgaacgtc
     3421 acgatgtagc gaaccagaag gcccggacct ggctcggcaa ggtgggcctg gacggttacg
     3481 gcgataaatt ccccgacgag ctctcgggcg gaatgaggca gcgcgtgggg ctcgctcgtg
     3541 cgttggcggc ggacacggaa gtcctgctga tggacgaagc attttcggca cttgatcctc
     3601 tgatccgcac cgagatgcag gatcagttgc tcgaattgca gaggacgttg aacaagacca
     3661 ttgtcttcat cacgcacgac ctggatgaag cattgcggct gggcacgcag atcgcgattc
     3721 tgcgcgatgg cgaactcgtg cagcaaggca cgcccgagga cattgtgcgt tttcccgcga
     3781 acgactatgt ccgacggttc gtcgagcggc gcgccgaacg cgtcgcataa ccctatcagt
     3841 tagcacgatc aactgagtgc aggacagggc ccgtaacaag ggtcctggat acacacgtcc
     3901 ataccggggg atcaataaaa gaagcggcat aaaagaagcg tcataaaaaa agcaggtcca
     3961 cgccggcgac acgccgggtc tatggttttg gagccatcaa tgaaaaagca agcaatctgc
     4021 atgactttgt catgcctgtt cgtcgcgggc gcgcatgccc aaagcagtgt gacgctgtat
     4081 ggcgtcatcg acgaagggtt cgactatacg aataacgtca acggcaataa agcctatgaa
     4141 atgcagagcg gctatgcgca gggcagccgc tggggattga agggcggcga agacctgggc
     4201 gggggcgtca aggcgatctt cacccttgaa aatggattca acctgaacaa tggacgactg
     4261 ggtcagg
//
LOCUS       DATGBK010000944         1725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_312267, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000944 DATGBK010000000
VERSION     DATGBK010000944.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312267"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..953
                     /locus_tag="VKJ77_13130"
     CDS             <1..953
                     /locus_tag="VKJ77_13130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="isoaspartyl peptidase/L-asparaginase"
                     /protein_id="HMC46259.1"
                     /translation="GGAGTILRTLMESDAEQRYHASLHGILAAGQSVLAAGGSALDAV
                     SEAVRLLEDNPLFNAGRGAVFTADGTHELDASIMDGSTLEAGAICCVKRVRNPILVAR
                     RVLEASEHVMFTGAGAEAFAVAQGFEPVDPSYFHTDARYKQWLLARGQQRVMLDHDGA
                     TLTDGDAEPTPHEPIDPNRKFGTVGAVALDQHGHVAAATSTGGVTNKQVGRVGDAPLI
                     GAGCYADDATCAVSTTGSGEMFMRMVAAYDVAAQMAYRGVSLEEAAADVVMKRLPRIN
                     GRGGLIAVDALGNVTLPFNTEGMYRGFARVGVAPVTAIYR"
     gene            1054..>1725
                     /locus_tag="VKJ77_13135"
     CDS             1054..>1725
                     /locus_tag="VKJ77_13135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004533085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46260.1"
                     /translation="MARSRLDTLPPECVLAVDDLSIAFRQGDKAFNAVRNLSLTVDRG
                     ETLAIVGESGSGKSVTSLALMRLIEHGGGRIASGSIAFRRRDGHVLDLARASSSTMRS
                     IRGADIAMIFQEPMTSLNPVFTVGDQIGEAIALHQHKSRSAARAETLRLLELVRIPEA
                     RRVAARFPHQLSGGMRQRVMIAMALSCKPALLIADEPTTALDVTIQAQILQLIRGLQD
                     EMNMGV"
BASE COUNT          309 a          546 c          554 g          316 t
ORIGIN      
        1 acggcggcgc aggcaccatc ctgcgcacgc tgatggagtc cgacgcagag cagcgctacc
       61 acgcgagcct gcacggcatc ctcgcagcag gccagagcgt tctggccgcc ggcggcagcg
      121 cactcgacgc cgtgagcgaa gccgtacgcc tgctcgaaga caacccgctg ttcaacgcgg
      181 gacggggtgc ggttttcacc gccgatggca cgcatgaact cgacgcttcc atcatggacg
      241 gcagcacgct cgaagccggt gcgatctgct gcgtcaagcg cgtgcgcaat ccgatcctgg
      301 ttgcgcgccg cgtgctcgag gccagcgaac atgtgatgtt cacgggcgca ggcgctgaag
      361 cattcgctgt ggcacagggg tttgaaccgg tcgacccctc gtactttcat accgatgccc
      421 gctacaaaca atggctgctt gcacgcggcc agcaacgcgt gatgctcgat cacgacggcg
      481 ccacattgac ggatggcgac gcagagccca cgccacacga acccatcgat ccgaatcgaa
      541 agttcggtac ggtcggcgcg gttgcgctcg atcaacacgg acacgtggct gccgccacgt
      601 cgaccggcgg tgtcaccaac aagcaggtcg ggcgggtggg cgatgccccg ttgatcggcg
      661 cgggctgcta tgcggacgat gcaacctgtg cagtgtccac caccggttcg ggcgagatgt
      721 tcatgcggat ggtcgccgct tacgacgttg cggcgcaaat ggcgtatcgc ggggtatcgc
      781 tggaagaagc tgcagcggac gtcgtgatga aacgcctgcc acgtattaat ggccgcggtg
      841 gattgattgc cgtcgatgca ctcggcaacg tcacgttgcc gtttaacacc gagggcatgt
      901 accgcggttt tgcgcgggta ggcgttgcac cggtcacggc gatttatcgc tgacgttcgt
      961 tcatctgtcc gatcccacgc ttgggcactg cgcgaatcat cgcccgagcc gcgttcattc
     1021 cttgaggaaa acatcgtgcc gatttcaccg cacattgcac gctcgcgtct cgacaccttg
     1081 ccaccggaat gcgtgctcgc cgttgacgat ctttcgatcg cgttccgcca aggcgacaag
     1141 gctttcaacg cggtgcgcaa cctgtcactc accgttgatc gtggcgagac actcgcgatc
     1201 gtcggcgagt cggggtcggg caagtcggtg acgtcgctcg cgctgatgcg cctgatcgag
     1261 catggcggtg gccgcattgc cagcggctcc attgcgttcc ggcggcgcga cggccatgtg
     1321 ctcgatctcg cgcgtgcttc gtccagcacg atgcgatcaa tccgcggcgc cgacatcgcg
     1381 atgatcttcc aggagcccat gacatcgctg aacccggtgt tcaccgtagg cgatcagatt
     1441 ggcgaagcga tcgcgttgca tcagcacaag agccgcagtg cagcgcgcgc ggaaaccttg
     1501 cggctgcttg aactcgtgcg tattcccgaa gcgcgccgcg tggcagcgcg gtttccgcat
     1561 cagctgtccg gcgggatgcg ccagcgcgtg atgattgcga tggcgctgtc atgcaagccg
     1621 gcgctgctga tcgccgatga accgaccacc gcgctcgacg tcacgatcca ggcgcagatc
     1681 ctgcaactga ttcgcggctt gcaggacgag atgaacatgg gcgtg
//
LOCUS       DATGBK010000945         7146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_57782, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000945 DATGBK010000000
VERSION     DATGBK010000945.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 7146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7146
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57782"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..104)
                     /locus_tag="VKJ77_13140"
     CDS             complement(<1..104)
                     /locus_tag="VKJ77_13140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase"
                     /protein_id="HMC46261.1"
                     /translation="MRLTDFKALTFDCYGTLIDWERGITAGLMPLIQRV"
     gene            complement(209..934)
                     /locus_tag="VKJ77_13145"
     CDS             complement(209..934)
                     /locus_tag="VKJ77_13145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018784 - (S)-2-haloacid dehalogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006805 - xenobiotic metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase type II"
                     /protein_id="HMC46262.1"
                     /translation="MKLTDFDTLTFDCYGTLIDWETGIFQGLRPLLERVKQPLTRDQV
                     LEAHARHESSQQKYTPAKRYQDLLPIVYKRLAEEWQVPFTLADCVAYGKSVQNWPAFE
                     DSADALQYLKQHYKLVILSNIDNESFTYSNAKLQIEFDAIITAEDVGSYKPSPRNFEY
                     MLDKLGERGIKKDKILHTAESLFHDHKPANECGLASCWIYRRHEQEGFGATMNPGQQP
                     KVDFRFNNMAGLVKAHQEALLQK"
     gene            complement(1242..2228)
                     /locus_tag="VKJ77_13150"
     CDS             complement(1242..2228)
                     /locus_tag="VKJ77_13150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrtA/SsuA/CpmA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC46263.1"
                     /translation="MSNPSSSIWSRRRFLQTTVAASALATGLAACGSRKTDTVRLGWG
                     LGGLPMFAKVRGEFEKTLAKDNIKVEWIGPFPNHAPSLAAVTGGSADFSFGGSTTPAL
                     AAMIAGSPLVFTQFCVVDPRSTAIIAKDGSGIDRVEDLVGKTVAVNRSGLGEFLLVAA
                     LEKHKVPRDAVKIVYLNPPDAAPAFSQGKIDAWSMWSPGVDIARANYKGHNIFLEGRD
                     LDFQIDFNSYVTTRKFAEDNADLVKAVNAAYGQEAKWASDNSLEAEKIAQQQGHYSDE
                     VRDTLSSMKRRFNMHGVGDKAFVQDLQKAADWLAARSVLPQKINVSDYLAKV"
     gene            complement(2321..3031)
                     /locus_tag="VKJ77_13155"
     CDS             complement(2321..3031)
                     /locus_tag="VKJ77_13155"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006465032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46264.1"
                     /translation="MSAPLKFSGPAVVVRNLRRSYGERIVIDSLNLRIERGEFVALLG
                     ESGCGKTTLLRALSGLDPIDGGSIDGPRLPAIVFQEPRLLPWETLSRNVALGLAPGPK
                     SHAAAQAALAEVGLGERLEDWPRNLSGGQAQRVALARALVQEPQLLLLDEPFAALDAL
                     TRIKMQRLVKHLIERHQPGVLLVTHDVDEAIALADRALIMRGGAIAAEYRVTEAAGPA
                     LRETLLAQLGVDADTATH"
     gene            complement(3031..3900)
                     /locus_tag="VKJ77_13160"
     CDS             complement(3031..3900)
                     /locus_tag="VKJ77_13160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC46265.1"
                     /translation="MADVFARGASVLHSQLDPDARPAVAQKPNHAGPVSPWLRYVSWS
                     MPVLLLIVWELFARLGALSPNVLPAPSKVALTAFELVKEGRLIGDMAVSLLRAATGFV
                     IGGSIGFVLGTAVGFSKVAEAFLDRNIQMLRAIPFLAVLPLVIVWFGVGEAGKIFLVS
                     LGVMFPIYINTVLGIRQVDPKLIELGRVLGLSNWTLIRRIVLPGALPSVLAGVRYALA
                     TAWLALVVAETIATSTGIGFLAMDAREFLRTDVIVMTIVIYAAIGVLADQLARFLERR
                     LLSWHVNFAKVSR"
     gene            complement(4107..4277)
                     /locus_tag="VKJ77_13165"
     CDS             complement(4107..4277)
                     /locus_tag="VKJ77_13165"
                     /inference="COORDINATES: protein motif:HMM:TIGR02607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HMC46266.1"
                     /translation="MNGHAGISADMAILLGAALGTSAEMWTIMQARYDLWQAQRKPHR
                     KVEPFPELARAA"
     gene            complement(4342..5574)
                     /locus_tag="VKJ77_13170"
     CDS             complement(4342..5574)
                     /locus_tag="VKJ77_13170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HMC46267.1"
                     /translation="MSQITTGALNGLATALRGQQKQLTERWMQLVFGDAEVEHSDDLT
                     YRQLADHVPRIFDEICLVLESQDMDSQEQAIEKDSREHGKWRWQQGYRVDELVRELDL
                     FRQVLLAAIGDYAQHNPSFDRKREERARLITDQTLSFVTLTSVREAVSERDRKLDEYT
                     GMLERANQELTLRQGLISDLYETRMQVARRVAHDLRNFLNVFATALQLIGRSQTKNDR
                     AIALAKRQITDMATLVDEMGEYSKVLGDDSILTVERFDLAEFFDELMQLCHVSAKAKG
                     LALKGRVDPALSMITSNRLKMKQIALNLLSNAIKYTTTGEVELAIVTSGAKYWTLRVS
                     DTGMGISEEDRERVFEEFERAASDEVPGTGLGLAIVKELARELQGVIRFESYKGRGSV
                     FEVRFPLVLEIDGGVSGG"
     gene            complement(5753..6712)
                     /locus_tag="VKJ77_13175"
     CDS             complement(5753..6712)
                     /locus_tag="VKJ77_13175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018423409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46268.1"
                     /translation="MKSTLDVLMGRLRMKQLQLLIALDDHKSLHKASSAMSMTQSAAS
                     KALAELESMLEAPLFERAKKGLVPNQFGFCVIRYARLLAADLTSLCQEVADIRSGTGG
                     RLAVGAIMGSVPDLVVPILNELQECNPGLSIEIVEDTSARMLALLDEGRLDLVVGRSI
                     VSDEPSRYLYQPLGDEPLSVVVGYDHPPFAAGELTFADLGGHRWITYPSAMPMQALLQ
                     REMDLAGAQVPVSAISTASTFVTVALLQCSADLVSVLPAGVAKLFCKHRMLRTLPIGF
                     KSKSQTFGIVTRKVGVLSPSARQFVQRLMDASTSMSLTAASRD"
     gene            6812..>7146
                     /locus_tag="VKJ77_13180"
     CDS             6812..>7146
                     /locus_tag="VKJ77_13180"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HMC46269.1"
                     /translation="MPNPTNRTTYRGVFPVAPTVFDASGRLDLDGQKRAIDFMIDAGS
                     HGLCILANFSEQFALTDDERATVQKAVLEHVAGRVPVIVTTTHFSSDVCAARSRAAQD
                     AGAAMVMVMP"
BASE COUNT         1482 a         2230 c         2026 g         1408 t
ORIGIN      
        1 acgcgttgaa tcagaggcat gagacccgcc gttatgccgc gttcccagtc gatcagcgtg
       61 ccgtaacaat cgaaggtgag cgccttgaaa tcagtgagtc gcacttgaac ctcctggaaa
      121 ataaatcgca tttgactgcg cggccagcga cctgccgcgc aacatcttgc gagttcgaat
      181 cgcccgggcg gcaggcacta taaagacgtt acttttgcag caaggcttcc tgatgcgctt
      241 tcacgaggcc cgccatgttg ttaaagcgga agtccacctt aggctgctga cccggattca
      301 ttgtcgcacc gaagccttct tgctcgtgac ggcgataaat ccagcacgat gccaggccac
      361 attcgtttgc cggcttgtga tcgtgaaaca ggctctcggc ggtatgcagg attttgtcct
      421 tcttgatccc acgctcacca agcttgtcca gcatgtattc gaaattacgc ggtgacggct
      481 tgtacgaacc aacgtcttca gctgtgatga tcgcgtcgaa ctcgatctgc agttttgcat
      541 tgctgtaggt gaagctttcg ttgtcgatgt tcgagaggat aacgagcttg taatgctgct
      601 tgaggtattg cagggcgtct gccgaatctt cgaaagccgg ccagttctgc actgacttgc
      661 cgtacgctac gcagtcggcc agcgtgaacg gcacctgcca ttcttcggcc agccgtttgt
      721 acactatagg cagcaggtcc tggtaccgct tggcaggtgt gtatttctgc tgcgaggatt
      781 cgtggcgtgc atgagcctca aggacctgat cgcgtgtcag cggctgcttg acacgctcaa
      841 gaaggggacg cagaccttgg aagatcccgg tctcccaatc gatcaaggtc ccatagcagt
      901 caaacgtcag cgtatcgaag tcggtgagtt tcatatcagt ttccgctcag ttgttcacag
      961 gatgaactca cagtgtattg actcgcggcg gcagccgtta ctgatgtaga gatcagcatc
     1021 agcagccggt ttcgtacgat agctgtctgg cagcagattc tgctgccgcg tatgcagcct
     1081 cgtggatttc agtcgatgga cgctggatga cctggattct gtcagctctc tcctacttta
     1141 ccggcaggat accgtgcgcg ttcccctgcg atacgccgga tgtctggata ggagatgttc
     1201 cgcagagtcg agcgttgact ctgcatggcc atattggctc atcaaacctt cgcgagatag
     1261 tccgacacat tgatcttctg cggtaaaaca ctacgcgccg ccagccagtc cgccgctttc
     1321 tgcagatcct gcacgaaggc tttatcgccg acgccgtgca tgttgaacct gcgcttcatg
     1381 ctgctgagcg tatcgcggac ttcgtcgctg taatgaccct gctgctgggc gattttctcg
     1441 gcctcaagcg agttgtccga tgcccatttc gcttcctgtc cgtatgcggc gttaactgct
     1501 ttaaccagat cggcgttgtc ctcggcgaac ttgcgcgtag tcacatagga attgaaatcg
     1561 atctggaaat ccaggtcccg cccttcgagg aagatgttgt ggcctttgta attcgcacgc
     1621 gcaatgtcca cgccggggct ccacatcgac catgcatcga tcttgccttg cgagaacgcg
     1681 ggcgccgcgt cgggcggatt cagataaacg atcttcaccg catcgcgtgg caccttgtgt
     1741 ttttcgagag cagccacgag caggaattca ccgagtcctg aacgattcac tgcgaccgtc
     1801 ttgccaacca gatcttccac ccggtcaatg cccgatccgt ccttcgcgat gatcgccgtg
     1861 ctacgcggat cgacgacgca aaactgcgtg aacacgagtg gcgagcccgc gatcattgcc
     1921 gccagcgcgg gcgtcgtgct gccgccaaag ctgaagtccg cgctgccgcc ggtgaccgct
     1981 gcgagcgatg gcgcgtgatt gggaaatggt ccgatccact ccactttgat gttgtctttc
     2041 gcgagggttt tctcgaattc gccgcggact tttgcgaaca tcggcaagcc gccgagtccc
     2101 cagccaaggc gaaccgtatc ggttttccgg ctgccgcacg ccgcgaggcc ggtggccaac
     2161 gccgatgcag ccacggtggt ttgaaggaag cggcggcgcg accagataga ggaacttgga
     2221 tttgacatgg cgaattggag tcgaacagat aaacggaatc gtgcccgccg gtgaaggcgg
     2281 gcgagaggtg aggcgaatcg aatgcgagga tatctgtgga ctagtgcgtg gccgtgtcgg
     2341 cgtccacgcc gagttgcgcg agcagcgtct cccgcagtgc gggcccggca gcctccgtca
     2401 cacgatactc ggcggcaatc gcgccgccgc gcatgatcag cgcacgatcc gcgagtgcaa
     2461 tcgcttcatc tacatcgtgc gtaacgagca atacccccgg ctgatggcgc tcgatcaaat
     2521 gcttcaccaa acgctgcatc ttgatacgcg tcagcgcgtc gagcgcggca aacggttcgt
     2581 cgagcaatag cagttgcggt tcctgcacga gcgcacgtgc cagcgccacg cgttgcgcct
     2641 gaccaccgga taagttacgc ggccagtctt ccaggcgctc acccaggccc acttccgcca
     2701 gcgccgcttg cgcggccgca tggctttttg gaccaggtgc tagcccaagt gccacgttgc
     2761 gcgagagcgt ctcccatggc aacaaacgcg gctcctggaa cacgatagcc ggtaaacgcg
     2821 gcccgtcaat cgaaccgccg tcgattggat caagccctga caacgcccgc agtaacgtag
     2881 tcttgccaca gccgctttcg cccagcaacg cgacgaattc gccccgctcg atccgcaggt
     2941 tcaaactatc gataacgatt cgctctccgt acgaacgccg cagattgcga acgacaaccg
     3001 ccggacccga aaacttcaaa ggtgcactca tcagcgggac accttcgcaa aattcacatg
     3061 ccatgagagc aagcggcgct cgaggaaacg cgcaagctga tccgccagca cgccgatcgc
     3121 ggcatagatc acgatggtca tcacgattac atcggtacgc aggaattcgc gcgcgtccat
     3181 tgcaagaaaa ccgatacccg tactggtcgc aatggtctcc gccaccacca gtgcgagcca
     3241 cgccgtggca agcgcataac gcacgcctgc cagcaccgac ggcaacgcgc cgggcaacac
     3301 gatgcgccgg atcagcgtcc agttcgacag cccgaggacg cgaccgagtt cgatgagttt
     3361 gggatcgacc tgacgaatcc cgagaacggt attgatgtag atcgggaaca tgacgccaag
     3421 cgataccagg aagatcttgc ctgcctcgcc cacgccgaac cacacgatca ccaatggcag
     3481 cactgcaaga aacgggatgg cgcgcagcat ctggatgttg cgatcgagaa acgcctcagc
     3541 cactttggaa aagccgacag ccgtgccgag cacgaacccg atcgaaccgc cgatcacgaa
     3601 gccggttgcg gcgcgcagca gactcacggc catgtcgcca atcagacgcc cttctttcac
     3661 aagctcgaat gcggtgagag cgaccttcga cggcgcgggc agtacgtttg gcgacaacgc
     3721 gccgagacgc gcgaacaact cccacacgat caacagcaga accggcatgc tccacgacac
     3781 ataacgcagc catggagaca ccgggcccgc gtgattgggt ttctgcgcga cggcgggacg
     3841 tgcgtcggga tcaagctgcg aatggagaac ggatgccccg cgggcgaata cgtctgccat
     3901 cggttgaaga ctccttttgt ccgggtggct cgccgcgccc aacgcggcaa cgagcatcag
     3961 caaatgctag ccacacgatg ttaaacaata ggcaaaatac tggaaccacg taaaacttct
     4021 atgcttagca gcggcgccgg gaaacatcag gtacgcgcca gatataaaaa aaccgcctcg
     4081 aggacggtgt ggataagaat tgcgcgtcag gctgctcgtg ccagttcggg gaatggctca
     4141 acctttcggt gtggttttcg ctgtgcctgc cacagatcgt agcgagcctg catgatggtc
     4201 cacatttcgg ccgacgttcc gagcgcggca ccaagcaata tagccatgtc agccgaaatg
     4261 ccagcgtgac cattgattgc gcgccgtcac agggaaccga cggcggtttt gctacaacgg
     4321 aaatattctg atcctcctgc ctcacccccc cgaaaccccg ccatcgattt caagtaccag
     4381 cggaaaacgc acttcgaaca cgctgccgcg gcccttgtac gattcaaagc ggatcacgcc
     4441 ctgtagttcg cgcgcaagtt ccttcacgat cgccaacccc aatccggtgc cgggaacctc
     4501 gtcggaagcc gcgcgttcga attcttcgaa cacccgttcg cgatcctcct cactgattcc
     4561 catgcccgtg tccgacacac gcagcgtcca gtatttcgca cccgacgtga cgatcgccag
     4621 ttccacctcg cccgttgtgg tgtatttgat tgcgttggac agcaggttca gcgcaatctg
     4681 cttcatcttc agacggttgg acgtgatcat gctcaatgcc ggatcaacgc gccccttgag
     4741 cgccagacct ttcgccttgg cggacacatg gcaaagctgc atgagttcat cgaagaattc
     4801 ggccaggtcg aaccgctcga ccgtcaggat ggagtcatcg ccgagcactt tcgagtattc
     4861 gcccatttca tcgacgagcg tggccatgtc ggtgatttgc cgtttcgcaa gcgcgatcgc
     4921 ccggtcgttt ttcgtctgcg aacggccgat caattgcagc gcggtcgcga atacgttcag
     4981 gaagttgcgc agatcatgag ccacgcgtcg ggccacctgc atgcgggttt cgtaaaggtc
     5041 gctgatcagc ccttgccgta gggtcagttc ctgattcgcg cgctccagca tgccggtgta
     5101 ttcgtcgagt ttccgatcgc gttcgctaac cgcctcgcga acggaggtca gcgtaacgaa
     5161 actaagcgtc tgatcggtga tcagacgcgc acgttcctca cgcttgcggt cgaacgaggg
     5221 attgtgctgc gcgtagtcgc caatggccgc gagcaggacc tggcggaaca agtccagttc
     5281 gcgaaccagt tcgtccacac gataaccctg ttgccagcgc cattttccgt gctcgcgcga
     5341 gtccttttcg atcgcctgct cttgcgaatc catatcctgc gattcgagta ccagacagat
     5401 ttcgtcgaaa atgcgcggga catggtcggc aagctgccgg taggtgagat cgtcggaatg
     5461 ctctacctcg gcgtcaccaa agacgagttg catccagcgc tcggtgagct gcttctgctg
     5521 tccccgcaag gcggtggcga ggccgttcaa ggcgccggtg gtgatttggc tcatgcccga
     5581 gatccgtaag cggtagcgcg ccgggtcggc gcctagggta gtgctgatgc cggtgcagcg
     5641 cggatagtgc caaccggaac gctcggtccg ggcatgagac gcgagtggct aaagtatagg
     5701 acgacgcaat ggcaggagcg cgccgatcgg ttttcgccgc ctccgcccga cctcagtccc
     5761 gacttgctgc cgtgagcgac atcgacgtac ttgcgtccat caaccgctga acaaactgcc
     5821 gtgccgacgg cgacaacacc cccaccttgc gcgtcacgat tccgaacgtc tgcgacttcg
     5881 acttgaatcc gatcggcagc gtgcgcagca tgcgatgttt gcaaaacaac ttcgcaacgc
     5941 ccgccggcag caccgacacc aggtcggcgc tacattgcag taacgcgacc gtcacgaacg
     6001 ttgacgcggt cgagatcgcg ctcacgggca cctgcgcccc cgccagatcc atctcacgct
     6061 gcaacagcgc ctgcatgggc atggcgcttg ggtacgtgat ccaccgatgc ccgcccagat
     6121 cagcaaacgt cagctcgccg gccgcgaacg gcggatgatc gtagcccacc accacggaca
     6181 agggctcgtc gcccagcggc tgatagagat atctcgacgg ctcatcgctg acgatcgagc
     6241 ggccgacgac gagatccagc cgtccttcgt caagcagcgc cagcatccgc gcgctcgtgt
     6301 cctccacgat ttctatcgac aagcccggat tgcactcttg caactcattc aggatcggca
     6361 cgaccagatc cggcaccgat cccatgatgg ccccaaccgc cagacggccg cccgtgcccg
     6421 agcggatatc ggcgacttcc tggcataacg aggtcaggtc ggccgccagc agccgcgcgt
     6481 agcggatgac gcaaaagccg aactggttcg gcaccagccc tttcttcgcg cgctcgaaca
     6541 gaggcgcttc cagcatcgac tccagctcgg cgagcgcctt gctggccgcc gattgcgtca
     6601 tcgacatcgc gctcgaggct ttatgcagcg acttgtggtc atcgagcgcg atcagcaact
     6661 gcagctgctt catgcgcaag cggcccatta atacgtccag cgtggatttc atgggtgagt
     6721 cgtaaaagcg atcactagat ggaaaggttt cactatacag cgccttcttc cagcacctat
     6781 agttccctca aacagacaat ggagacttcc gatgcccaat ccgaccaacc gcacgaccta
     6841 ccgcggcgtg tttccggtcg ccccgaccgt cttcgacgcc tccggacgcc tcgacctgga
     6901 cggccagaaa cgtgcgatcg acttcatgat cgacgccggt tcacacggcc tgtgcatcct
     6961 cgccaatttc tccgaacaat tcgcgctcac cgacgacgaa cgcgccacgg tgcagaaagc
     7021 cgtgctggaa cacgtggccg gccgcgtgcc ggtgatcgtg accacgactc atttcagcag
     7081 cgatgtctgc gcggcccgca gccgcgccgc gcaggacgca ggcgccgcga tggtcatggt
     7141 catgcc
//
LOCUS       DATGBK010000946         1535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_80717, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000946 DATGBK010000000
VERSION     DATGBK010000946.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80717"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1535)
                     /locus_tag="VKJ77_13185"
     CDS             complement(<1..>1535)
                     /locus_tag="VKJ77_13185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006483901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HMC46270.1"
                     /translation="AGKAFSGGADITEFNTPKATQEPTLHTVIKAVEGSTKPIVAAIH
                     SVAMGGGLELALGAHYRVASAGAQIALPEVKLGILPGAGGTQRLPRAVGLETALNMIV
                     SGAPVMSEKLAGTGLFDQMTQGDLLDEAVKFAQKVGAQNGPHPKVRDRKIEHPNAEGF
                     IQFARNGVTPLAKNFPAPLKCIDAVEAGVKLGFDKGLAIERECFMALVQTPESRALRH
                     AFFGERAASKIPDVPSSTPVRKIDRVGVIGAGTMGGGIAMNFVNAGLPVTLLEMKQEA
                     LDRGLATIRKNYESAVKKGRLTTEKLEERMALITPTLAYEDLKDADLIIEAVFEELGV
                     KEQVFSKLDQVAKKGAILASNTSTLDVDKIAAFTKRPEDVVGMHFFSPANVMKLLEVV
                     RGAKTSKDVLATVMQLAKKIKKTAVVSGVCDGFIGNRMIEQYLRQALFMLEEGALPAQ
                     VDRAIEKFGFAMGPFRMSDLAGNDIGWAIRKRRYQEKPDLKYSKIADRLCETGRFGQK
                     TGA"
BASE COUNT          268 a          492 c          433 g          342 t
ORIGIN      
        1 ggcgccggtc ttttgtccga agcgcccggt ctcgcacaaa cggtcggcga tcttcgaata
       61 cttcagatcc ggcttctcct gataacgccg tttgcgaatc gcccagccga tgtcattgcc
      121 cgcgagatcg ctcatgcgaa acggtcccat cgcgaagccg aatttttcga tcgcgcgatc
      181 cacttgcgcc ggcaacgcac cttcttcaag catgaaaagc gcttgacgca gatactgctc
      241 gatcatccgg ttgccgataa aaccatcgca aacgcccgac accacggccg tcttcttgat
      301 cttcttcgca agttgcatga ccgtggcgag cacgtccttc gatgtcttcg cgccccgcac
      361 gacctccagc agtttcatta cgttggccgg gctgaagaag tgcatgccga ccacgtcttc
      421 gggacgcttg gtgaaggctg caatcttgtc gacatcgagc gtagacgtat tcgatgccag
      481 gatcgcaccc ttcttcgcga cctgatcaag tttcgaaaat acctgctctt tcacgccgag
      541 ttcttcgaac accgcttcga tgatcaggtc ggcgtctttg aggtcttcgt aagcgagcgt
      601 aggcgtgatc agcgccatgc gttcttcaag cttctcggta gtcagacggc cctttttcac
      661 ggcgctttcg tagttcttgc ggatggtggc caggccacga tccaatgctt cctgcttcat
      721 ctccagcagc gtcaccggca ggcccgcgtt gacgaaattc atggcgatgc cgccgcccat
      781 cgtccccgcg ccgatcacgc caacacggtc gatcttgcgc acgggtgtgg acgaaggcac
      841 gtcgggaatc ttgctcgccg cgcgttcgcc gaagaacgcg tgccgtagcg cgcggctctc
      901 gggcgtttgc acgagagcca tgaaacattc gcgttcgatg gccaggcctt tatcgaaacc
      961 tagcttcacg ccggcttcca cagcatcgat acatttgagc ggcgccggga agttcttcgc
     1021 cagcggcgtg acgccgttgc gcgcgaactg gataaaccct tcggcgttcg gatgctcgat
     1081 cttgcgatca cgtaccttcg gatgcgggcc gttttgcgcg cctacttttt gcgcgaattt
     1141 aacggcttcg tcgagcagat cgccttgcgt catttgatcg aacaatcccg tgccggccag
     1201 tttctccgac atcacaggcg cacccgacac gatcatgttg agcgcagtct ccaggccgac
     1261 cgcgcgcggc aagcgctgcg tgccgcctgc gcccggcagg atgccgagct tgacttcggg
     1321 caacgcgatc tgcgcgcccg ccgacgccac tcgatagtgc gcgccaagcg ccagttcgag
     1381 cccgccgccc attgccacgc tgtggattgc ggctacgatt ggctttgtgc tgccttcgac
     1441 ggccttgatg accgtgtgaa gcgtgggttc ctgggttgcc ttgggcgtgt tgaattcggt
     1501 gatatcggcg ccgccggaaa acgccttgcc cgcgc
//
LOCUS       DATGBK010000947         3709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_219716, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000947 DATGBK010000000
VERSION     DATGBK010000947.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3709
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219716"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..189)
                     /locus_tag="VKJ77_13190"
     CDS             complement(<1..189)
                     /locus_tag="VKJ77_13190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46271.1"
                     /translation="MTWDGVLFEKDNLEMLFAPVDGFGVLVLVLGFGVSAGVVSSGVS
                     GLSLCRVAAFGLSGLRKLD"
     gene            183..>3709
                     /locus_tag="VKJ77_13195"
     CDS             183..>3709
                     /locus_tag="VKJ77_13195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017330517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HMC46272.1"
                     /translation="MSQTNPSHDRRWQFWIDRGGTFTDIVARRPDGRIVTHKVLSENP
                     ERYRDSAVHGIRELLGIASHEAVPAELIDSVRMGTTVATNALLERKGAPTVLAITKGF
                     ADALRIAYQSRPKLFVRHIELPTLLYEQVVEIDERIGARGEVVRELDVEQARQALQSA
                     FDNGIRSCAIVLMHGYRYTDHEQKLKELAEQIGFTQISVSHEVSPLMKLVSRGDTTVV
                     DAYLSPILRRYVGQVEADLGAVPLQFMQSNGGLTDAHRFQGKDAILSGPAGGIVGAAQ
                     VSKLAGFDKIIGFDMGGTSTDVTHYAGEYEREFATEVAGVRIRAPMMKIHTVAAGGGS
                     ICGFDGARFRVGPQSAGANPGPASYRRGGPLTVTDCNVMTGKISARWFPHVFGPDGDL
                     PLDADVVQRKFAEVAAAVEDATGVARTPEEIAEGFLKIAVENMANAIKQISVQRGYDV
                     THYTLACFGGAGGQHACLVADALGMTRVFIHPLAGVLSAYGMGLADVRALRQQALETP
                     LDREALAACDHTFEPLETAARNEVAEQRIPVDNIALRRTLHIKYDGTDTALEIDFSME
                     PASIVETFERLYRARYGFLMPNKTLIIEAVAVEAIGRTQDAEDEQWPLAQHASVNPQA
                     LATTRIFSGGEWCDTPVFDRDALAPGARIDGPAIVNERTGTTVIEPGWQVVVSKHNHL
                     VVERTTALVNRHAAGTQADPVLLEVFNNLFMSIAEQMGVTLANTSYSVNIKERLDFSC
                     ALFDTGGNLIANAPHMPVHLGSMGESVQTIIDRRAGTMQAGDVYVLNAPYAGGTHLPD
                     VTVIMPVFVDASPTPTFYVAARGHHADIGGITPGSMPPDSTHVDQEGVLLDNIQLVAQ
                     GRFLEPEIRDLLTSGQYPVRNVEQNLADLRAQVAACTKGAQELERMCGQFGLDVVRAY
                     MQHVQDNAEEVVRRTLSVLKDGRFEYALDDGAKIVVAVSINRETRSAVIDFEGTSAQQ
                     PNNYNAPSAICKAAVLYVFRTLVDDDIPLNAGCLKPLEIRIPAGSMLNPHYPAAVVAG
                     NVETSQVVTDALYGALGVMAGAQGTMNNFTFGNEQFQYYETICGGAGAGPAFAGCSAV
                     QTHMTNSRLTDPEVLEWRFPVRLDDFRIRRSSGGAGLHAGGDGTERRVRFLAPMTAVI
                     LSNRRRVAPFGLAGGKPGAVGVNWVERAGG"
BASE COUNT          743 a         1177 c         1163 g          626 t
ORIGIN      
        1 atccaactta cgcagaccgc taaggccgaa agcagcaacc cggcataaac tcagaccgct
       61 aaccccagaa ctgacaaccc cagcactgac cccaaacccc aaaaccaaaa ccaaaacgcc
      121 aaacccgtcc accggtgcga acaacatttc taagttatcc ttctcaaaca ggaccccgtc
      181 ccatgtcaca gaccaacccc tcccacgatc gccgctggca attctggatc gaccgcggag
      241 gcacgttcac cgacatcgtc gcgcgccgcc ccgacggccg catcgtcacg cacaaggtgc
      301 tgtcggagaa ccccgagcga tatcgcgatt ccgccgtgca cggcatccgc gaactcctgg
      361 gcatcgcaag ccatgaagcc gtgccggccg agctgatcga cagcgtgcga atgggcacga
      421 cggtcgcgac gaacgcgctg ctcgaacgca agggcgcacc cacggtgctc gcaatcacga
      481 aaggtttcgc cgatgcactg cgcatcgcat atcaaagccg gccgaagctg ttcgtgcggc
      541 atattgaatt gccgacgctg ctctacgagc aagttgtcga gatcgatgaa cggatcggcg
      601 cacgtggcga agtcgtgcgg gagctcgacg tcgaacaggc acgccaggcg ttgcaaagcg
      661 ctttcgataa cggcatccgg tcctgcgcaa tcgtgctgat gcatggctac cgctacacgg
      721 accatgaaca aaagctcaag gagctggccg agcaaatcgg tttcacgcag atctccgtca
      781 gtcacgaagt cagcccgctg atgaagctgg tatcgcgcgg cgacaccacg gtggtcgatg
      841 cgtatctctc gcccatcctg cgccgctatg tcggacaggt tgaagcggat ctgggcgccg
      901 tgccgctgca gttcatgcag agcaatggcg gcctcaccga cgctcaccgt ttccagggca
      961 aggacgcgat cctgtcggga ccggcgggtg gcatcgtagg ggcggcgcag gtgtcaaagc
     1021 ttgcgggctt cgacaagatc atcggcttcg acatgggcgg cacatcgacc gacgtaacgc
     1081 attacgccgg cgagtacgag cgcgagttcg ccactgaggt ggccggcgtt cgcatccgtg
     1141 cgccaatgat gaagatccac acagtcgcag cgggcggcgg ctcgatctgc ggtttcgacg
     1201 gcgcgcgttt tcgcgtcggg ccgcaaagcg cgggggcgaa tcctggaccg gcttcgtacc
     1261 ggcgcggtgg cccgctgacc gtaaccgact gcaacgtgat gaccggcaag atcagcgcgc
     1321 gctggttccc gcacgtattc ggaccggacg gcgacctgcc gctcgacgcc gatgtcgtgc
     1381 aacgcaagtt cgcggaggtg gcagcggcgg tggaagacgc aaccggcgtc gcgcgaacac
     1441 ctgaagaaat tgcggaaggg ttcctgaaga tcgcagtgga aaacatggcc aacgcgatca
     1501 agcagatctc cgtgcagcgc ggctacgacg tgacacacta cacgctcgcc tgttttggcg
     1561 gcgcgggagg tcagcatgcg tgcctcgtag cggacgcgct tggcatgacg cgcgtgttca
     1621 tccatccgct ggcgggcgtg ctgtcggcct acggcatggg tctcgccgat gtccgtgcac
     1681 tgcgtcagca ggcgcttgaa acgccgctcg accgggaagc gctcgccgct tgcgatcaca
     1741 cgttcgagcc actggaaacg gcagcgcgaa acgaagtcgc cgagcaacgc atcccagtcg
     1801 ataacatcgc gttgcggcgc acgctgcata tcaaatacga cggcacggac accgcgctgg
     1861 aaatcgactt ctcgatggaa ccggccagta tcgtggagac gtttgagcgc ttgtatcgtg
     1921 cgcgttatgg cttcctgatg ccgaacaaga cgctgatcat cgaagccgtc gcggtcgaag
     1981 cgatcggccg cacgcaggac gctgaagacg agcaatggcc gttggcccag catgcgtcgg
     2041 tgaatccgca agcccttgcg accacgcgca tcttctcggg cggcgaatgg tgcgataccc
     2101 ccgtcttcga ccgcgatgcg ctggcgcccg gcgcgcgtat cgatggcccc gccatagtca
     2161 acgagcgcac cgggacgacg gtgattgaac cgggctggca agtcgtggtc agcaagcaca
     2221 atcatctcgt ggttgaacgc acgaccgctc tcgtcaatcg tcatgctgcc ggtacgcaag
     2281 cggaccccgt gctgcttgaa gtgttcaaca acctgttcat gtcgattgcc gaacagatgg
     2341 gcgtgacgct cgcgaacacg tcgtactcgg tgaacatcaa ggaacggctc gacttttcgt
     2401 gcgcgctctt tgacaccggc ggcaacctga tcgccaacgc gccgcatatg ccggtgcatc
     2461 ttggttcgat gggcgaaagc gtgcagacaa tcatcgaccg gcgcgcgggc accatgcagg
     2521 ccggcgatgt ctacgtcctc aacgcgccgt acgcgggcgg cacgcatttg cccgacgtga
     2581 ccgtcatcat gccggtgttc gtcgatgcca gccccacgcc gaccttctat gtcgccgcgc
     2641 gcggccatca tgctgatatc ggcggaatta cgcccggctc catgccgccg gattccacgc
     2701 acgtggacca ggaaggcgtg ttgctcgaca acatccaact cgtggcgcaa gggcgttttc
     2761 tcgaacctga aatacgcgac ctgctgacct ccggccagta tccggtacgc aatgtcgagc
     2821 agaacctggc cgatcttcgc gcgcaagttg ctgcttgcac aaagggcgcg caggagctcg
     2881 aacgcatgtg cgggcaattc gggctggatg tggtgcgtgc ctatatgcag cacgtgcagg
     2941 acaacgcgga agaagtcgtg cggcggacgc tttccgtatt gaaggacggc cgcttcgaat
     3001 acgcgctcga cgatggcgcg aagatcgtgg tggcggtatc gatcaatcgc gaaacgcggt
     3061 cggccgtgat cgacttcgag ggcacgagcg cgcagcaacc gaacaactac aacgcgccat
     3121 cggcgatctg caaggcagcg gtactgtatg tgttccgcac gctggtagac gacgatatcc
     3181 cgcttaacgc cggttgcctg aagccgctgg agatccgcat tccggcggga tcgatgctca
     3241 acccgcacta tccggcagcg gtcgtggcgg gcaatgtcga gacctcgcaa gtcgtcaccg
     3301 acgccctcta tggtgcgctc ggcgtgatgg ccggggcaca aggcacgatg aacaacttca
     3361 ccttcggcaa cgagcagttc cagtactacg agaccatctg cgggggcgcg ggcgcaggtc
     3421 ccgcctttgc cggttgcagc gcggtccaga cgcacatgac gaactcgcgc ctgaccgatc
     3481 ccgaagtgct cgagtggcgc ttcccggtac gtctcgacga cttccggatc cgccgcagca
     3541 gcggcggtgc aggactgcat gcgggcggcg acggcaccga gcggcgcgta cgtttcctcg
     3601 cgccgatgac cgcggtgatc ctgtccaacc ggcgtcgtgt cgcgccgttc ggacttgcag
     3661 gcggcaagcc gggcgcagtc ggtgtgaact gggtcgagcg agcgggtgg
//
LOCUS       DATGBK010000948         1864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_103755, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000948 DATGBK010000000
VERSION     DATGBK010000948.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1864
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103755"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VKJ77_13200"
     CDS             complement(<1..445)
                     /locus_tag="VKJ77_13200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine endopeptidase"
                     /protein_id="HMC46273.1"
                     /translation="MKTEMFSSLRVIHGVAVRTALSVAVSVALATSFAAAPVDAFAKT
                     TTSKSTKKLAKGAVAAPQAKTVKSSKVAARAAKNAQVAAVQEDDVPRATRRHRVSYRM
                     DARGRRAAVRSVAFQPRPPTVGQAFGLHETPDSLALRSSVAYVVDQ"
     gene            complement(900..1859)
                     /locus_tag="VKJ77_13205"
     CDS             complement(900..1859)
                     /locus_tag="VKJ77_13205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014616916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HMC46274.1"
                     /translation="MKAFYSDTFVLPLPPGHRFPMQKYYLLRERVQAELSNVVLNEAP
                     IVADSELARVHAVDYIERVATGALDASEQREIGFPWSPEMVERSRRSVGATIAACHAA
                     RQDGFAVNLAGGTHHSYASHGGGFCVFNDAAVAARALQAEARERGERTPHIAIVDLDV
                     HQGNGTVAIFQNDPSVFTLSLHGTSNYPFSKEIGDLDVALPDGCGDDAYMEALSGALS
                     TMFERFEPAMLIYLAGADPHVDDRLGRLALSVDGLAKRDSLVFSAAAERDLPVAITMA
                     GGYGRDINVTVDIHLQTIQLAAVAFGARRDSSAPDTLRSANFI"
BASE COUNT          415 a          542 c          524 g          383 t
ORIGIN      
        1 tctggtccac cacgtacgca acgcttgagc gcagcgcaag gctgtctggc gtttcgtgca
       61 gcccgaacgc ctggccaacg gtcggtggac gcggctggaa cgccactgaa cgcacggcag
      121 cacgacggcc gcgcgcatcc atccggtaac tgacgcgatg ccggcgcgtg gcgcgcggca
      181 catcgtcttc ttgcaccgca gcgacttgag cattcttcgc ggcgcgtgca gccaccttcg
      241 acgacttgac ggttttagct tgcggcgcag caactgcgcc tttggctagt ttcttggtgg
      301 atttcgaggt tgtggtcttg gcaaaagcgt cgactggtgc ggccgcgaaa gacgtcgcga
      361 gcgccaccga cacggcaacc gacagcgcag tgcggactgc aacgccgtgg atcaccctga
      421 gcgacgaaaa catttcggtt ttcattagtg ttctgttctg gaccggcggg agagtgtcgc
      481 cagtgtagta aagcttcgaa aaattagcaa tattaagcac ttatccgcac tacttaaacc
      541 ggtttgtaag acgcgattta ttcaagcgaa caaattctga gtaccgatcg taaaaaatca
      601 tcgccgacgg tgcaatcgtt ttcaccgcca cacgccgttg ccgacccaac ctatcagcgt
      661 cttatcggca atagtttgta agacttgagg aagatttttg atcctgccct caaggcaaaa
      721 aatttcacta atgggttgga cagcgacagg aaacgaagct tttcggcaag atatgccgat
      781 tcttaaccag catttcgact ggcatcgaaa gtttttgttc aacaaacttt gacgaagcgg
      841 gtcgatctca aatgttaacg tcgggttaac acatttggtt tactgagttt caaaccgttt
      901 caaatgaaat ttgccgaacg cagtgtatcg ggtgcgctcg aatcgcgccg ggcaccgaac
      961 gcaacggcgg caagctgaat ggtctggaga tggatgtcaa cggtgacgtt gatatcgcga
     1021 ccgtaacctc cggccattgt tattgccaca ggtaaatccc tctcggctgc agcgctgaat
     1081 acaagggaat cgcgcttggc gaggccatcg acgctcagcg cgagtcgccc cagccgatcg
     1141 tcgacgtgcg gatcggcgcc cgccagatag atcagcatgg cgggttcaaa gcgctcgaac
     1201 atcgtcgata aggctccgga aagcgcttcc atataggcgt cgtccccgca accgtcgggc
     1261 agcgcgacgt cgagatcgcc gatctccttg ctgaacgggt aattcgatgt gccatgcaga
     1321 gacagcgtga aaacgctcgg atcgttctgg aaaatggcca cggttccgtt gccctgatgc
     1381 acgtccaggt cgacgatcgc tatgtgcggc gtgcgctcgc cgcgctcccg cgcctcggcc
     1441 tgtagggctc gggcagcaac ggctgcgtcg ttgaatacac agaatccccc gccgtgcgat
     1501 gcatatgaat gatgcgtccc gcccgccaga ttcaccgcga aaccgtcctg acgggcggca
     1561 tgacacgcgg caatcgtcgc cccaacggag cgccgggagc gctccaccat ttccggcgac
     1621 cacggaaagc caatctcccg ttgctcgctg gcgtccagcg ctccggtagc cacccgctcg
     1681 atgtaatcga ccgcgtgaac gcgcgccaat tcggaatcag ccacgatcgg cgcttcgttc
     1741 aacacgacat tggacagttc ggcctgcaca cgctcgcgca aaaggtaata tttctgcatg
     1801 ggaaaccgat gaccgggtgg cagcggcaac acaaacgtat cgctataaaa ggctttcatt
     1861 cgaa
//
LOCUS       DATGBK010000949         5668 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_266020, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000949 DATGBK010000000
VERSION     DATGBK010000949.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5668
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266020"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VKJ77_13210"
     CDS             complement(<1..406)
                     /locus_tag="VKJ77_13210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HMC46275.1"
                     /translation="MSSWFSFQPKGWFAALLAALILSTGLAACSRPDTTPWKLTDVSG
                     HLPDLDFKLTDDTGKPVTGQSFLGQTTLVYFGYTHCPDVCPETMARLMQVMQQLGPDA
                     KNTRIVFITVDPARDTAAALHDYVRAFDAQHAV"
     gene            742..1503
                     /gene="otsB"
                     /locus_tag="VKJ77_13215"
     CDS             742..1503
                     /gene="otsB"
                     /locus_tag="VKJ77_13215"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004805 - trehalose-phosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HMC46276.1"
                     /translation="MQNLPDNFPLATTAFFFDFDGTLVELAPTPDGVSVQPVVPAILS
                     ALRRATNGAVAIVSGRGIDSIDSFLSMPDLPVAGLHGAERRDSNADVHRVGFNDERLL
                     RMEHVLEGVVKANPGMLLEIKGAALALHYRNAPERGAAAREATEKLVAQYADAYVLQP
                     GKMVYEIKPKDVDKGRAVVAFLNEPPFAGRRPVFIGDDLTDEKGFAVVNERNGVSIKV
                     GAGDTLAHSRVESVGALLDWLQRIAGIESSTGTRS"
     gene            1500..2879
                     /gene="otsA"
                     /locus_tag="VKJ77_13220"
     CDS             1500..2879
                     /gene="otsA"
                     /locus_tag="VKJ77_13220"
                     /EC_number="2.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate
                     synthase (UDP-forming) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalose-phosphate synthase
                     (UDP-forming)"
                     /protein_id="HMC46277.1"
                     /translation="MSRLIIVSNRVAPISEGGPAAGGLAVGVYDALKETGGMWFGWSG
                     DVVAEPPEGITLEERGRVTFATIGLAQRDYDQYYRGFSNATLWPAFHYRPDLIQFDRD
                     EFDGYCRVNRWLAKQLAPLLKADDVIWVHDYHLIPFAQALRDEGVTNRIGFFLHIPFP
                     AAQVLLSVPRHRVLVEALCSFDLLGFQTAPDLRAFCDYIETEANGSVVRIAGEPNAVS
                     AFGKTLRAAAYPIGVYPDEIASLAKDGESGREVQTVKTTLHNRKLIMSVDRLDYSKGL
                     VERFRAFEKLLEHLPAQRNNVSFIQIAPPTRADMDTYRDIRLALEAESGRINGRYAEL
                     DWTPIRYIHRQYERPVLAALFRASHVGFVTPLRDGMNLVAKEYVAAQDPDDPGVLVLS
                     QFAGAAQELNGALIVNPLDIAGMADALATALAMPLKERQARYTDMFAQLRENNVSVWR
                     DNFMRDLQA"
     gene            complement(2953..4791)
                     /locus_tag="VKJ77_13225"
     CDS             complement(2953..4791)
                     /locus_tag="VKJ77_13225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46278.1"
                     /translation="MEQLTVSQRNVHNAKLASYANRPLAFLFRYIRRHPVAHTIVLVS
                     VLSAVGCALASQYAIKHLIDVLGQGRGHPGPLWAAFMILVGLIAADNMLWRVGGWVGA
                     HAFVVVTGDLRRDLFSYLSGHSPTYFSEKQPGMLASRITATSNAIYTAENTMAWNVLP
                     PCIAVIGAIVMIVAVNPLMAGCLMLASAILALVLYRLAGRGSARHHTFATKAASVDGE
                     LVDVIGNMALVRAFGMTFREQKRFGSTVKAEMVARQQSLLYLEKLRLFHAVVTAILSA
                     GLLGWALWLWSKGRATSGDIVLVSSLGFTILHGTRDLAVALVDVTQHVARLAEAVQTL
                     LEPHGMPDRSDATELVPQGGRVDFEEVTFAYPRRRPILDKFNLHIEPGQRVGLIGKSG
                     AGKSTVLALLQRFYEPQGGSIKVDGQDISLITQDSLRLSIALVPQDISLFHRTVYENI
                     AYGRPDASREEVLAAAREARCSDFIDAMPEGFDTIVGDRGVKLSGGQRQRIAIARAIL
                     KNAPILLLDEATSALDSSSEEAIQQALDRLMVGRTVIAIAHRLSTLQGFDRIIVMSAG
                     KVIDDGSPDQLRNRPGLYRELLSKQHGKLPPTTMPSQQLAAKAEST"
BASE COUNT         1099 a         1666 c         1810 g         1093 t
ORIGIN      
        1 caaccgcgtg ctgcgcgtcg aacgcgcgga cgtagtcatg cagcgcggcg gcggtatcgc
       61 gggcgggatc gacggtaata aacacaatgc gcgtgttttt agcatcgggc ccaagttgct
      121 gcatgacttg catcagccgc gccatggtct ccggacacac gtccggacag tgggtgtagc
      181 caaagtacac cagcgttgtc tggcccagga acgactgacc ggtgacgggt ttgccggtat
      241 cgtcggtgag cttgaagtcc aggtcgggca gatggccgct gacatcggtc agcttccaag
      301 gcgttgtatc agggcgcgag cacgcagcga ggccggtact caggatcagg gcggcaagca
      361 gtgcggcgaa ccagcccttg ggttgaaaac tgaaccagga agacattttg caactcggat
      421 gagggtaggg tgcatcaagg tagcaacgcg gacgggtgat caaggaactg tccgtgaagc
      481 tatccgggtg ccgactctat ctcagaatag aagcttacgc cgggcgcaca gccgcgccgg
      541 cgtgtggtcg aggcgttatg ccgcacgcct gccagacaag gctgaaaggg tgtcgaagca
      601 ggttcgaaag ctgcgtggta cttggcatag ggtgttggcc tgccgcatga gcgtccaacg
      661 ccgctttccc agatggggtt acaaagcgcg gtaacatgcg cacacttttc cggtccttct
      721 ccggctgaaa ggcagacata gatgcaaaac ctcccagaca attttccgct cgccacgacc
      781 gcatttttct tcgatttcga cggcacgctc gttgaacttg cgcccacgcc ggacggcgtg
      841 agcgtgcagc cggtcgtacc ggccatccta agcgcattgc gtcgggcgac caacggcgcg
      901 gtcgccatcg tgtcggggcg cgggattgac agcatcgact cgtttctttc aatgcccgat
      961 ctgcccgtgg caggtttgca cggcgccgag cggcgcgatt cgaacgcgga tgtccaccgt
     1021 gtcggtttca acgacgagcg cctgctacgc atggaacacg tgctcgaagg cgtggtgaag
     1081 gccaatcccg gcatgctgct ggagatcaag ggtgcggcgc tcgcgctgca ttatcgcaat
     1141 gcgccggagc gcggcgcggc ggcgcgcgag gcgaccgaga agctggtcgc ccagtatgcc
     1201 gatgcgtacg tgctgcagcc cggcaagatg gtctacgaaa tcaagccgaa ggatgtcgat
     1261 aaaggccgcg cggtggtggc ctttctgaat gagccgccgt tcgcgggccg ccgaccggtg
     1321 tttatcggcg atgacctgac ggacgagaaa ggcttcgcgg tggtgaacga gcgcaatggg
     1381 gtgtcgatca aggtcggagc gggcgacacg ctagcgcatt cgcgggtgga atcggttggc
     1441 gcgctgctcg actggttgca gcgtattgca ggaattgaaa gttctacagg gacgcgttcg
     1501 tgagcaggct gatcattgtt tcgaaccggg tcgcgccgat ctccgaaggc ggcccggcgg
     1561 cgggcggtct ggcggttggt gtctacgacg cgctcaagga aaccggcggc atgtggttcg
     1621 gctggagcgg cgacgtggtc gcagagccgc ccgaaggcat cacgctggag gagcgcggcc
     1681 gggtgacgtt cgcgaccatc ggcttggcgc aacgcgatta tgaccagtac taccgcggct
     1741 tttcgaacgc cacgttgtgg ccggcgtttc actatcggcc ggatctgatc cagttcgacc
     1801 gcgatgaatt cgatggttat tgccgcgtga atcgctggct cgcgaagcaa ctggcgccgc
     1861 tgctgaaagc cgacgacgtc atctgggtcc acgactatca cctgattccg ttcgcccagg
     1921 cgctacgcga tgagggcgtg acgaaccgca tcggtttttt cctgcatatt ccgtttccgg
     1981 cggcgcaggt tctgctcagc gtgccgcggc atcgcgtgct ggtcgaggca ctgtgttcct
     2041 tcgatctgct gggtttccag acagcgcctg atctgcgcgc gttctgcgat tacatcgaga
     2101 cggaggcgaa tgggtcggtc gtgcgtatcg ccggagagcc gaatgccgtg agcgcgtttg
     2161 gcaagacgct gcgggcggcg gcttatccga ttggcgttta tcccgacgag attgcgtccc
     2221 tcgccaaaga cggcgaaagc ggacgcgaag tgcagaccgt caagacgacg ctgcacaatc
     2281 gcaagctgat catgagcgtc gaccggctcg actattcgaa gggtctcgtc gaacgctttc
     2341 gcgcgttcga aaagctgctg gagcatcttc cggcgcagcg caacaacgtc tcgttcatac
     2401 agatcgcgcc gcctacacgc gccgatatgg acacgtatcg cgacatccgc ctggcattgg
     2461 aagcggaatc cgggcgcatc aacgggcgct acgccgagct tgactggacg ccgatccgct
     2521 atatccatcg gcaatatgag cggccggtgc ttgccgcgtt atttcgcgcg tcgcatgtgg
     2581 ggttcgtcac gccgttgcgc gacggcatga acctggtcgc caaggaatac gtagcggcgc
     2641 aggatcccga cgatcccggc gtgctggtcc tgtcgcaatt cgcgggcgcg gcgcaggaat
     2701 tgaacggtgc gctgatcgtg aatccgctcg atatcgccgg catggcggac gcactggcca
     2761 cggccctcgc gatgccgctg aaagagcggc aggcccgata cacggacatg ttcgcccagc
     2821 ttcgcgagaa caacgtctcc gtctggcgag acaacttcat gcgcgatctg caggcgtaaa
     2881 aaagccgctt cggtctgatg aatccgaagc ggcttttttt tcacctttcg ctcgagtcgc
     2941 gatgaagcaa actcaggtcg actcggcctt cgccgcaagt tgttgcgagg gcatggtcgt
     3001 cggcggcaac ttgccatgct gcttggacag cagttcccga tacaaccccg gccggttgcg
     3061 caactgatcc ggcgaaccgt cgtcgatcac tttgcccgcg ctcatcacaa taatccggtc
     3121 gaagccttgc agcgtcgaca accgatgcgc aatcgcaatc accgtacggc cgaccatcag
     3181 ccggtcgagc gcctgctgga tcgcttcttc cgacgaacta tcgagtgccg acgtggcttc
     3241 gtcgagcagc aggatcggcg cgtttttcag gatcgcgcgc gcgatggcaa ttcgctgacg
     3301 ctgtccgccc gacaacttca cgccgcggtc gccgacgatc gtgtcgaacc cttccggcat
     3361 tgcgtcgatg aagtccgagc agcgcgcctc gcgggcggcg gcgagcactt cttcgcgcga
     3421 cgcgtccggg cggccatacg caatgttctc gtacacggta cggtggaaca gcgaaatgtc
     3481 ctgcgggacg agcgcaatcg acagccgcag gctgtcctgc gtgatcagcg agatatcctg
     3541 cccgtcgacc ttgatggagc cgccttgcgg ttcgtagaag cgttgcaaca gcgcgagcac
     3601 cgtggatttc ccggcgcccg acttgccgat cagcccgacg cgctgacccg gctcgatgtg
     3661 caggttgaat ttatcgagaa tcggccggcg gcgcggatag gcgaacgtga cttcctcgaa
     3721 atccacccgg ccgccttgcg gcacgagctc cgtcgcgtcg gaccgatcgg gcatgccgtg
     3781 cggttccagc aaggtctgca cggcttccgc cagacgcgcg acgtgctgcg tcacatccac
     3841 aagggcaaca gccagatcgc gggtgccgtg gagaatcgtg aaaccgagtg agctgaccag
     3901 cacgatatcg ccggacgttg ctcgcccttt cgaccacagc cacaacgccc agccgagcag
     3961 tccagccgag agaatcgcgg tcacgacggc gtggaacagc cgcagtttct cgagatacaa
     4021 caagctttgc tgacgcgcga ccatttcggc cttgaccgtc gagccgaagc gcttttgctc
     4081 gcgaaaggtc ataccgaatg cacgcacgag cgccatgttg ccgatcacgt cgaccagctc
     4141 gccgtcaacc gatgcagctt tcgtggcaaa cgtgtgatgc cgggcggacc cgcgaccggc
     4201 gagccggtac agcaccagcg cgagaatggc cgaggcgagc atcagacagc cggccatcag
     4261 cggattcacc gcgacgatca tcacaattgc gccgattacc gcgatgcacg gcggcaacac
     4321 gttccacgcc atggtgttct cggcggtgta gatcgcattc gatgtcgctg tgatccggct
     4381 cgcgagcatg ccgggctgtt tctcggagaa gtaagtgggc gaatgtccgc tgaggtagga
     4441 aaacaggtcg cgccgcaggt cgcccgtcac cacgacgaac gcgtgcgcgc cgacccagcc
     4501 gccgactcgc cacagcatgt tgtcggcggc gatcaggccg acgaggatca tgaaagcggc
     4561 ccagagtggg ccgggatgcc cgcggccctg gccgagtacg tcgatcaggt gtttgatcgc
     4621 gtactgcgaa gcgagcgcgc agccaacagc tgacagcaca ctgaccagca cgatggtgtg
     4681 tgcgaccgga tgccggcgga tgtaacggaa caggaaggcc agtgggcgat ttgcatagct
     4741 cgctagcttc gcgttgtgca cgttacgctg agagacggtg agttgttcca atggtcgttt
     4801 tcggtcgagt agagcggttg agcgcgatgc ttcgccgtgg tcgccaagcg cggcgcgtct
     4861 ggccagcgag gcgatggcgt accaatggcg tgcagcaccg attgctgaat tgtagcgagt
     4921 gtagcgagcc aaatcgtctc gcataatgct ttccgtggcg caaattcatc agtcgcggct
     4981 gattttcagc aaaagtgcgt tgtctgaacc gggcaatcaa tgcccgcttg agacgcgtct
     5041 tgcacctttc acggtccgct cggtgctatt cgcggtacct cgacgtgaac tggcttcaac
     5101 tggtaaccac gccctttgca gggtgaagca cgtcgcggtc ccgctacctg catagcggcg
     5161 ctgttggcaa atccgacgct ggccgaacca tcatggcgtg gccggatttg gaggatgtcg
     5221 cagcgccttt gatatctgaa gcgtggctgc gaccggttca agtccgtgtc gatcagcgta
     5281 gaacagcctt gataaacaag ggcttgcaaa gtgtatcgac ggtgtaacaa cgtaaataag
     5341 ttgaaatgta agcttggaaa ccttgtaaaa accgcgatac ttcaccccgg gtttcccctt
     5401 aggcgttttg acaggttatt gtaggttccg gtcaacggct ccgcaggttg tgcgtttatg
     5461 gctgggtgcg ttgcatttac gagatggaat cgatcttgct ctgcctgatt acgctctgaa
     5521 acagacgccc aacagccata gcagcagcaa cacccaagca aacagcgaag catcgcgatt
     5581 tttttctcgt gctatcggcc attacgctgg agacaccagc accgtgccga gtccgggtag
     5641 ggcgattcgc ttgatttaac gaccgatg
//
LOCUS       DATGBK010000950         1692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_103770, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000950 DATGBK010000000
VERSION     DATGBK010000950.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103770"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VKJ77_13230"
     CDS             <1..478
                     /locus_tag="VKJ77_13230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC46279.1"
                     /translation="HSGPIVARLDPEQVQEIYEIRALLESEAARACAEHATPALVKQL
                     REIRKEIEDAFDQSDFKRVLTYTERFYETMFTGGHKLMMHQVVKSLNARINQLRAVTI
                     ASPGRGADSNREVNKLLSAIAKKDGNAAAAASLEHVRRTAGIVMATLAERAAEASV"
     gene            677..1264
                     /locus_tag="VKJ77_13235"
     CDS             677..1264
                     /locus_tag="VKJ77_13235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004531333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid synthesis family protein"
                     /protein_id="HMC46280.1"
                     /translation="MKLEIRKLVTYVEDTFIEGGKVAERPLKLFAAAAVLRNPWAGRG
                     FVDDLRPEIHGLAPQLGEILTAEILRIAGSGAAVEGYGKAAIVGTSGEVEHASALIHT
                     LRFGNKFREAVGAKSYLSFTNLRGGPNCPVTIPLMHKGDEGMRSHYLTIQFSIIDAPG
                     PDELVIALGASIGGRPHHRIGDRYQDLKELGSNEA"
     gene            1287..>1692
                     /locus_tag="VKJ77_13240"
     CDS             1287..>1692
                     /locus_tag="VKJ77_13240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004527060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC46281.1"
                     /translation="MNGVFDGTAYSVAGEGPALVLIHGVGMNRSVWAPQVDALQLCFR
                     VVSYDMLGHGASRLPAASPTLDEYAGQLAALLNHLQIDAVHVVGHSMGSLIALEFALQ
                     YPQRVASVAALNAVYDRTPTQRAAVMQRAASLE"
BASE COUNT          329 a          479 c          546 g          338 t
ORIGIN      
        1 gcattccggg ccgattgtcg cgcgactcga tcccgagcag gttcaggaga tctacgaaat
       61 ccgcgcgttg ctcgagtccg aggcggcgcg cgcgtgtgcg gaacacgcaa ccccggcgct
      121 ggtgaagcag ctacgcgaaa tccgcaagga gatcgaggac gccttcgatc agtcggattt
      181 caagcgcgtg ctgacctaca ccgaacgctt ctacgaaacc atgttcaccg gcgggcacaa
      241 gctgatgatg catcaggtgg tcaagtccct gaacgcgcgg atcaaccaat tacgagcagt
      301 gactattgcg tcgccgggac gaggcgcgga ctccaatcga gaggtgaaca agttgctgtc
      361 cgctatcgcc aagaaagatg gcaatgccgc cgctgcggcc tcgcttgaac atgtgcgtcg
      421 aacagcaggc attgtgatgg ccacgcttgc cgagagggct gccgaagcca gcgtgtgatg
      481 gctgtgtgac accggttccc aggctatgaa ggccgtcgac atcgacggct tttttttcgc
      541 ctgaaggtct ttcagcgtgc tctcgtaaac ccctcaatca ccgaaaattc ttgcatccag
      601 tattatggga taccataata tttagacgac gccaccgcac gaagccgtgg cgtttttgcc
      661 tacggagaaa acccccatga aactcgagat tcgcaagctg gttacctatg tggaagacac
      721 cttcatcgaa ggcggtaaag tggccgagcg gccgttgaag ctgttcgcgg cggcagccgt
      781 gctgcgcaat ccgtgggcgg ggcgtggttt cgtcgatgac cttcgtcccg agatccacgg
      841 acttgcgccg caactgggcg agatcctgac cgcggagatc ctgcggattg ccggatcggg
      901 cgcggcggtg gagggttatg ggaaagcggc gattgtcggg acgtcaggcg aggtcgaaca
      961 tgcgtcggcg ctgattcata cgctgcgctt cggcaacaag ttccgcgaag cggtgggtgc
     1021 gaagagctat ttgagtttta cgaatttgcg tggtggtcct aactgtccgg tcaccattcc
     1081 actcatgcac aagggcgatg aaggcatgcg ctcgcattac ctcaccatcc agttctcgat
     1141 catcgatgcc cccggccccg atgagctcgt gattgcgctg ggtgcatcga ttggcggtcg
     1201 gccgcatcat cgtattggcg accgctatca ggatctgaag gagcttgggt ccaatgaagc
     1261 atgacacagt gactagccat gcgccgatga acggcgtgtt cgacggcacg gcgtacagcg
     1321 tggcgggcga gggcccggcg ctcgtcctga tccacggcgt ggggatgaat cgcagcgtat
     1381 gggcgcctca ggtggacgcg ctgcagttgt gttttcgggt cgtgtcatac gacatgctgg
     1441 gccacggcgc cagccgcttg ccggcggcct cacctacgct cgatgaatac gcgggacagc
     1501 tcgccgcgct gctgaatcat ttgcagattg atgcagtgca tgtggtcggt cactcgatgg
     1561 gctcgctgat cgcgctcgag tttgcgctgc aatacccgca gcgggtggcg agcgtggctg
     1621 cgctgaatgc ggtatacgac cgcacgccta cgcagcgggc cgccgtgatg cagcgcgcgg
     1681 cgtcgctgga ag
//
LOCUS       DATGBK010000951         1973 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_11169, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000951 DATGBK010000000
VERSION     DATGBK010000951.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11169"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(145..930)
                     /locus_tag="VKJ77_13245"
     CDS             complement(145..930)
                     /locus_tag="VKJ77_13245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014194051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC46282.1"
                     /translation="MTTSVLIVDDDPAVCDLLSRFLKARGLDVSVLHDGTGLRRRLEY
                     ARPSIVVLDIMMPDMDGLAALRQVRSAGDDIPVIFVTARDSVTDKVEGLELGADDYLA
                     KPFDPRELLARIDTVLRRRAPASTGRPEACASERFGRFELDFITRALVSGNERIPLRD
                     SEFALLKVLVRHPYKVLSRVLIHDLVHRDDSTFSDRSLDVPIWRLRRIIEEDPASPRH
                     VQTVRGQGYVFIPDPDGARNTNAATQSVPAIPATSTPDRASTV"
     gene            1178..1927
                     /locus_tag="VKJ77_13250"
     CDS             1178..1927
                     /locus_tag="VKJ77_13250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC46283.1"
                     /translation="MTHHVLLVDDDPVVRDLVREYLQGNGLAVSVLHDGTGLKRRLDV
                     ERPSIVVLDVMMPEQDGISALRELRAAGDDIPVIFLTARSDVIDRVIGLELGADDYLA
                     KPFDPRELLARIRTVLRRRDAAAPGAPEDRPPYRFGPYEVDFAARELRHNGERVPLRS
                     GEFATLKIFVKNEMVVLTRAQLNEKLRGQAGTYRDRSLDVSIWRLRRLLEADPSDPRY
                     VQTVWGQGYIFVPHGETGAVERAIRRASTEA"
BASE COUNT          381 a          583 c          642 g          367 t
ORIGIN      
        1 ccatgcgccc gaacagcgta ttgaacggat tgccgcgacc cgaacggttg cgactcaaga
       61 ggcgaaccgg cccggcatga cctgacccgt tgcgggcgcg ttggatgccg cgcgggccgt
      121 gacctggcgc cgtgccgaag agtctcatac cgtagaagcg cgatcgggtg tggaggtagc
      181 ggggatggcc ggcactgatt gggtcgccgc gttcgtgttg cgcgcaccgt caggatcggg
      241 aatgaacaca taaccctggc cgcgcacggt ctgcacatgg cgcgggctgg ccggatcttc
      301 ttcgataatt ctgcgcagcc gccagattgg cacgtcaagg ctgcggtcgc tgaaggtgct
      361 gtcgtcgcga tgcacgagat cgtggatcag cacgcgagac aagactttgt acgggtgccg
      421 cacgagcacc ttgagcaacg cgaattcgct gtcgcgaagc ggaatgcgct cgttgccgct
      481 caccagcgca cgcgtgatga agtcgagctc gaagcgcccg aaccgttcgc ttgcacaggc
      541 ttccggccgt cccgttgacg caggcgcgcg ccgccgcaat accgtgtcta tgcgggcgag
      601 aagttcgcgc ggatcgaagg gtttggcgag gtaatcgtcc gcgccgagtt ccagcccttc
      661 caccttgtcc gtcacgctgt cgcgcgcggt gacgaagatc acggggatat cgtcaccggc
      721 ggagcgcacc tggcgaagtg ccgcgaggcc gtccatgtcc ggcatcatga tgtcgagcac
      781 cacgatggac gggcgtgcat attccagccg ccggcgcagg ccggtgccat cgtgaaggac
      841 ggaaacgtcc agcccgcgcg ctttcaggaa gcggctcagc aggtcgcata ccgccgggtc
      901 gtcgtcgacg atcaatacgg atgtagtcat ggtgaaattt tagccggcat ctcaaaaatg
      961 cggtttttca tctactcaaa gatggttacc gattcttact cgaaactccc gcaaaaatga
     1021 ccgaaaaggg cggctttaaa agcccgtaag tgttgacccg ggcggctaag cgctttgatc
     1081 tgacgtataa agcactcgct tgctgtgcaa ttcgatgaaa gaagcggaaa ggaatcagtg
     1141 tcgcgaaaag gcccgttggc gtcttagaat gaatcgcatg acccatcatg ttctcctcgt
     1201 cgacgacgat cccgtagtgc gcgacctcgt tcgcgaatat ctgcaaggca atggccttgc
     1261 agtttcggtg ctgcacgacg gtacaggcct taaacgacgt cttgacgtcg agcggccgtc
     1321 aatcgtcgtg ctcgacgtga tgatgcccga gcaggacggc atcagtgcgt tgcgcgaatt
     1381 gcgtgcggcc ggcgacgaca tccccgtgat cttcctgacg gcgcgttcgg atgtaatcga
     1441 ccgcgtgatc gggctcgaac tgggcgcgga cgattacctg gccaaaccct tcgatccacg
     1501 cgaactgctt gcccgcatcc gcacggtcct gagacgtcgc gacgcggcgg cgccgggcgc
     1561 gccggaggac cggccgcctt accgctttgg cccctatgaa gtcgattttg ccgcgcgcga
     1621 gctgcgtcac aacggcgaac gggtgccgct gcgttccggc gaatttgcga cgctgaagat
     1681 cttcgtgaaa aacgagatgg tcgtactcac gcgtgcgcag ttgaacgaga agctgcgggg
     1741 tcaggcggga acgtacaggg accgcagtct cgacgtgtcc atatggcggc tgaggcgctt
     1801 gctcgaagcc gacccatccg atccgcgtta tgtccagacg gtctggggac agggctacat
     1861 cttcgtgccg cacggcgaga ccggcgcggt ggagcgtgct atccggcggg catcgaccga
     1921 ggcgtaacaa ggtgcaaggc cttctcgggc cttgcacgta aaagcggccg gtg
//
LOCUS       DATGBK010000952         1956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_57860, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000952 DATGBK010000000
VERSION     DATGBK010000952.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57860"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            236..1318
                     /locus_tag="VKJ77_13255"
     CDS             236..1318
                     /locus_tag="VKJ77_13255"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009027 - tartrate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0046395 - carboxylic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tartrate dehydrogenase"
                     /protein_id="HMC46284.1"
                     /translation="MTKTYKIAIIPGDGIGTEVMPEAIRVLDAATKRFGISIEYKHIE
                     WASCEYYLKHGQMMPDDWKAQLQDCNAILFGAVGWPDTVPDHISLWGSLLKFRREFDQ
                     YINLRPARLFEGVPSPLANRKAGDIDFWIVRENTEGEYSSVGGVMFEGTDREFVLQES
                     VFTRHGSERVLKFAFDLAQRREKKKITVATKSNGIAISMPWWDQRAAEVAALYPDVKW
                     DKQHIDILCARFVLNPDRFDVVVATNLFGDILSDLGPACTGTIGLAPSGNLNPERKFP
                     SLFEPVHGSAPDIAGKNIANPVAMIWSAAMMLEFVGDFKGPEKEAHDAILAAIEATLK
                     EGPHTGDLGGKASTTEVGQAIAARLA"
     gene            1378..>1956
                     /locus_tag="VKJ77_13260"
     CDS             1378..>1956
                     /locus_tag="VKJ77_13260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC46285.1"
                     /translation="MTRQFELKELIRSDNFIDGQWRAAADGARFAVTDPATGTVITQV
                     ADSSPADARAATDAAARALPAWRDLLPKERATILHKWNALIMAHQDALGALISLEQGK
                     PLAEGRGEVAYGASYVAWFADEATRIYGDIIPQQQRGKRMTAVKEPIGIVAAITPWNF
                     PLAMIARKIAPALAAGCTVVAKPAEDTPLTASA"
BASE COUNT          429 a          630 c          564 g          333 t
ORIGIN      
        1 atggaactgc acgctgtgga cacttagggt agagcggtga aagcgttttc tttgcttcgt
       61 ttctttgtcg ctttggacaa agaaatgacg cgccgccacg cgcagtggct aacagtgata
      121 aagaaaacat ccaactcacg cagaccgcta aggccgaaag cagcaacccg ccaacgaccc
      181 cgaccgctaa cgcaaccaaa accccgacac gtataaaccc ttaccaggac caaccatgac
      241 gaagacctac aagatcgcaa ttattcccgg cgatggcatt ggcacggaag tcatgcccga
      301 agccatccgt gtgctcgacg ccgccacgaa gcgcttcggc atttccatcg aatacaagca
      361 cattgaatgg gccagctgcg agtattacct gaaacacggc cagatgatgc ccgacgactg
      421 gaaagcccaa ttgcaggact gcaacgccat cctcttcggc gcggtcggct ggcccgacac
      481 cgttcccgat cacatctcgc tgtggggttc gctccttaaa ttccgccgcg aattcgacca
      541 gtacatcaac ctgcgccctg cccgtttgtt cgaaggcgtg ccgtcgccgc ttgcgaaccg
      601 caaagccggt gacatcgatt tctggatcgt gcgcgaaaac accgaaggcg aatattcatc
      661 ggtgggtggc gtgatgttcg aaggcacgga ccgcgagttc gtcctgcaag aatccgtgtt
      721 cacgcgccac ggcagcgaac gcgtgctgaa attcgcattc gatctcgccc agcgccgcga
      781 gaagaaaaag atcaccgtcg ccacgaaaag caatggcatt gccatcagta tgccgtggtg
      841 ggaccagcgc gccgccgaag tggccgcgct ctatccggac gtcaagtggg acaagcagca
      901 catcgacatc ctgtgcgccc gcttcgtcct caacccggac cgtttcgacg tggtcgtggc
      961 gaccaacctg ttcggcgaca tcctctccga cctcggtccg gcgtgcaccg gcaccatcgg
     1021 cctcgcgccg tcaggcaacc tgaaccccga gcgcaaattc ccgtcgctgt ttgaacccgt
     1081 gcatggatcg gcgccggaca ttgcgggcaa gaacatcgcc aacccggtcg ccatgatctg
     1141 gtcggcagcc atgatgcttg agttcgtcgg tgacttcaaa ggcccggaaa aagaggcgca
     1201 cgacgcgatc ctcgctgcta tcgaggcaac gctgaaggaa ggcccacata ccggcgacct
     1261 cggtggcaaa gcgagcacaa cggaagtcgg tcaggcaatt gctgcgcgac tggcttgaac
     1321 cagcacgctt gaagcattgc gcttaaatta gttggtttaa atcaggagca tggacttatg
     1381 acacgccaat tcgaactgaa ggagttgatc cgctcggaca atttcatcga tggccaatgg
     1441 cgcgcggccg ctgacggcgc gcgcttcgcc gtcaccgatc cggccaccgg cacggtcatc
     1501 acgcaagtcg ccgacagcag ccccgccgac gcgcgcgccg ctaccgacgc cgccgctcgc
     1561 gcgctgcccg cgtggcgcga cctgctgccg aaagaacgcg caacgatcct gcataaatgg
     1621 aacgcgttga tcatggcgca tcaggatgcg ctcggcgcgc tgatctcgct ggaacaaggc
     1681 aagccgctgg ccgaaggccg gggcgaagtg gcgtatggcg cgtcgtatgt cgcctggttc
     1741 gccgatgaag ccacgcgcat ctacggcgac atcattccgc agcagcaacg cggcaagcgc
     1801 atgacggcgg tgaaggaacc catcggcatt gtcgcggcca tcacgccgtg gaatttcccg
     1861 ctcgcgatga tcgcgcgcaa gatcgcaccg gcgctcgcgg ccggctgcac cgtggtcgcg
     1921 aagcccgctg aagacacgcc gctgaccgcc tcggcg
//
LOCUS       DATGBK010000953         1644 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_126945, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000953 DATGBK010000000
VERSION     DATGBK010000953.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126945"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1644
                     /locus_tag="VKJ77_13265"
     CDS             <1..1644
                     /locus_tag="VKJ77_13265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011350098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC46286.1"
                     /translation="IRENDLVMLALPASVAHVSMLMGCVVLGALPCTVPLPGKRMVTT
                     ATHVVDVACDMYRPKLLIATDACAPSLVSMSQRTGVRVIDETALAAVLAVGTAPIISA
                     KADNDAHHVQLTSGSISYPKAAVLSHRNVIANSLGIGGSVGFDTERGDRTASWLPLYH
                     DMGLLTLLSNLHYRSPLLMMQPSSFIRNPLGWLKRVATARATTTSVPTFALRYCVRRF
                     NEIAMAGIDLSACRNIFIGGERVDESTLHAFADTFAPYGLERSALQPCYGMAESTLAV
                     TMHRAWHEGRVDGYPYVIADRIDTRDLIEQRRAVQAQTQDGEAVLAVGTPIPGMDYAI
                     VGDHGDALDDRHVGEVSVRGTSVMLGYLNAGDGSLTTPFNPDGWFATGDIGYAANGQL
                     FILGRKKEIIIIRGCNYFPHEIEEALGTHRVMQKGNCIAFGLHDEAAGTERLIVAVET
                     RPADATAKTRAELQTLLQQHIGFSAQEIVFVEAGGLPRTTSGKLQRLKCKAQYEAGTL
                     AVVETTVQPVAPEIITLPAEVLLVQPSQAGVRAAEGALA"
BASE COUNT          308 a          524 c          508 g          304 t
ORIGIN      
        1 attcgcgaaa acgacctcgt gatgctcgcg ctgccggctt cggtcgcgca tgtcagcatg
       61 ctgatgggct gcgtcgtgct gggcgcactg ccctgcaccg ttccgctacc cggcaagcgc
      121 atggtgacca ccgccacgca cgtggtcgat gtggcatgcg acatgtaccg tcccaaactg
      181 ctgattgcaa cggacgcatg tgcaccttcg ctggtgtcga tgtcgcaacg caccggggtg
      241 cgcgtgatcg acgaaaccgc gctggcggct gtccttgccg tgggcacggc accgatcatc
      301 agcgccaagg cggacaatga cgcgcatcac gtccagctca cgtccggctc gatctcgtat
      361 ccgaaggcag ccgtgctgag tcatcgcaat gtgattgcga attccctcgg catagggggc
      421 tcggtgggct tcgataccga acgcggcgac cgcactgcgt cgtggctgcc gctgtatcac
      481 gacatgggtt tgctcacgct gctctcgaac ctgcactatc gctcgccgct gctgatgatg
      541 cagccgagca gcttcatccg caatccactc ggctggctca agcgtgtcgc cacggcgcgc
      601 gcgaccacga cttcggttcc cacatttgca ttgcgctact gcgtgcgacg cttcaacgaa
      661 atcgcgatgg ctggtatcga cttgtcagca tgccgaaaca tctttattgg cggagagcga
      721 gtcgatgagt ccacgctgca cgccttcgcc gataccttcg caccgtacgg tctggaacgc
      781 tcggcgctgc agccctgcta cggaatggcc gaatccacgc tcgctgtcac aatgcaccgc
      841 gcgtggcatg aaggccgcgt ggacggatat ccgtacgtga tcgccgaccg tatcgatacg
      901 cgagacctga tcgagcaacg tcgcgcagtg caagcgcaaa cacaggatgg cgaagccgtg
      961 ctcgcggtcg gcacgccgat ccccggcatg gactacgcga tcgttggtga ccacggcgac
     1021 gcgctggacg accgccatgt gggcgaagtg tcggtgcgcg gaacgtcagt gatgctgggt
     1081 tacctgaacg ccggcgacgg ctccctcacc acgcccttca atcccgatgg ttggttcgcc
     1141 accggcgata tcggctatgc cgcgaacggc cagttgttca tcctcgggcg caagaaagaa
     1201 atcatcatca tccgtggctg caactacttt ccgcacgaga tcgaggaagc gctcggcacg
     1261 catcgcgtaa tgcagaaagg taattgcatc gcgtttggcc tgcatgatga agcggccgga
     1321 acggagcggc tgattgtcgc cgtcgaaacc cgtcccgccg atgccacggc gaaaacgcgc
     1381 gccgagttgc agacgctgct ccagcagcac atcggttttt cggcgcagga aattgtgttc
     1441 gtcgaagcgg gcggtctgcc gcgcacgacc agcggcaagc tgcaacgcct caagtgcaag
     1501 gcacagtatg aagcgggcac gctggcggtg gtcgagacca cggtgcaacc tgtcgcgcca
     1561 gagatcatca cgttgcccgc cgaggtcctg cttgtgcagc catcgcaagc cggtgttcgc
     1621 gctgccgaag gggccctcgc atga
//
LOCUS       DATGBK010000954         3468 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_173200, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000954 DATGBK010000000
VERSION     DATGBK010000954.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3468
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173200"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..1249
                     /gene="gspF"
                     /locus_tag="VKJ77_13270"
     CDS             32..1249
                     /gene="gspF"
                     /locus_tag="VKJ77_13270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HMC46287.1"
                     /translation="MPAFRFEAIDQAGKSQKGVLDADSARAARSQLRTQGLTPLVVEA
                     AATRTRGERKQRLSLGKRLSQREQAILTRQIASLLTAGLPLGETLSVLTEQSERDYVR
                     ELMAAIRGEVLGGHSFANALAEHPRDFPEIYRALVAAGEHTGKLGLVLSRLADYIEQR
                     NALKQKIVLAFTYPAIVTLIAFGIVTFLLSYVVPQVVNVFASTKQSLPFLTIAMMALS
                     GFVRNWWWAGLIGVALLSWIIKSVLARPGPRMAFDRWLLTAPLLGKLVRGYNTVRFAS
                     TLAILTAAGVPILRALQAAGETLSNRAMSANVEDAIIRVREGTSLSRALGNTKTFPPV
                     LVHLIRSGEATGDVTTMLDRASEGEAGELERRTMFLTSLLEPLLILAMGGVVLVIVLA
                     VMLPIIELNNLVQ"
     gene            1263..1676
                     /locus_tag="VKJ77_13275"
     CDS             1263..1676
                     /locus_tag="VKJ77_13275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein N"
                     /protein_id="HMC46288.1"
                     /translation="MNAFQTRLLSLIAFAIFCATLTWWVITLSTNQGAPLPAAAAGRA
                     PSVEQAATLFGGQLQHQENQDVHLFGILALQHGAAAIVSYGGEPARAISLGGPLTPGV
                     TIKEVRSRSIIIDRKGTRSEVFLPPNAPGPTNYVR"
     gene            1915..2391
                     /gene="gspG"
                     /locus_tag="VKJ77_13280"
     CDS             1915..2391
                     /gene="gspG"
                     /locus_tag="VKJ77_13280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HMC46289.1"
                     /translation="MQMWMKRRYELQTAQGSQQTRRQRGFTLIEIMVVIAILGILAAL
                     IVPKIMSRPDEARRVAAKADIGSIMQSLNLYRLDNGRYPTQEQGLRALVEKPTTEPVP
                     NNWKGGGYMDRVPMDPWGKEYQYLNPGVHGEVDIFSYGADSKPGGEGNDADIGSWQ"
     gene            2441..2953
                     /locus_tag="VKJ77_13285"
     CDS             2441..2953
                     /locus_tag="VKJ77_13285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family pseudopilin"
                     /protein_id="HMC46290.1"
                     /translation="MQHKPDCSAPDAEAARRAKVRPQAGFTLLEMLVVLVIAGLLVSL
                     ASVKLTRNPRTDLNEEAQRLALLLESAGDEAQVRARPIAWLPIEGGFRFTIRTEDGWR
                     PLRDDLLRQRRWEGGVTGVTVQYAGTDKSAERVVFGTEAIDTPMEVTLVSASGSVTIV
                     GTGNGRYQVR"
     gene            2953..3381
                     /gene="gspI"
                     /locus_tag="VKJ77_13290"
     CDS             2953..3381
                     /gene="gspI"
                     /locus_tag="VKJ77_13290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspI"
                     /protein_id="HMC46291.1"
                     /translation="MSTPTLAPGPRHGLSSKLNRSRGFTMIEVLVALAIIAVALAASL
                     RAVGAMATGEADLHRRLLAGWSADNELAQLRLTHTWPEIGSRTFDCSQGNLKLICTDR
                     VSSTPNPIFRRVEVIVESPGISGNLAQMVMVVANETNRSL"
     gene            3359..>3468
                     /locus_tag="VKJ77_13295"
     CDS             3359..>3468
                     /locus_tag="VKJ77_13295"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HMC46292.1"
                     /translation="MKPTVRSRRDVRSPRGDRGVRGFTLIEMLVAIAIFAV"
BASE COUNT          635 a         1030 c         1153 g          650 t
ORIGIN      
        1 gttgcgtgtg acgggcggag attaaacatc catgccggcg tttcgtttcg aggcaatcga
       61 tcaggcgggc aagtcgcaga aaggcgtgct cgatgccgac agcgcccgtg ccgcccgtag
      121 ccaactgcgg acgcaggggc tgacgccgct ggtggtcgaa gcggcggcta ctcgcacgcg
      181 aggtgaacgc aaacagcggt tatcgctggg aaaacgcttg tcgcaacgcg agcaggccat
      241 cctgacgcgg caaatcgcca gtctgttgac agcgggtctg ccgcttggcg aaacgctgtc
      301 ggtgctgacc gagcaatcgg agcgcgatta cgttcgcgag ttgatggccg ccatccgcgg
      361 cgaagtgctc ggcggccact cgttcgcgaa tgcattggca gaacatccgc gcgatttccc
      421 cgagatttat cgcgcgttgg tagccgccgg tgaacatacc ggcaagcttg gactggtcct
      481 gtcgcggctc gcggactaca tcgagcaacg caatgcgctg aagcagaaga tcgtgctcgc
      541 gttcacctat cctgcgatcg tcacgttgat cgcgttcggg attgtcacgt tcctgctgag
      601 ttacgtagtg ccgcaagtgg tgaacgtgtt cgccagcacg aaacagtcgc tgccgttcct
      661 caccatcgcg atgatggcgc tttccggctt cgtgcggaac tggtggtggg ccgggctgat
      721 cggcgtggcg ctgctgagct ggatcatcaa gagcgtgctg gcgcggcccg gtccgcgcat
      781 ggcgtttgac cggtggctgc tcaccgcgcc gctgctcggc aaacttgtgc gagggtataa
      841 caccgtgcgt ttcgccagta cgctcgcgat cctgacggcg gccggcgtgc cgatcctgcg
      901 tgcgctgcaa gccgcgggcg aaaccctcag caaccgcgcg atgagcgcca acgttgagga
      961 cgccatcatc cgcgtgcggg aaggcacctc gctgtcgcgc gcgctgggca acacgaagac
     1021 gtttccgccc gtgctggtgc atctgatccg ctcgggcgaa gccaccggcg acgtcaccac
     1081 catgctcgac cgtgcctcgg aaggcgaagc aggcgaactc gaacgccgca cgatgtttct
     1141 cacgagcctg ctggaaccgc tgctgatcct cgcgatgggc ggcgtcgtgc tggtgatcgt
     1201 gctggcggtg atgctgccga tcatcgaatt gaataatctg gtgcagtgaa gaagcccatc
     1261 ccatgaatgc atttcagacc cgcctgctat cgcttattgc gttcgccatt ttttgcgcga
     1321 cgctgacgtg gtgggtcatc acgctgtcga cgaaccaggg cgcgccgttg cctgcggcgg
     1381 ccgcagggcg cgcgccgtcg gtggaacagg ccgctacgtt gttcggcggg caactgcagc
     1441 accaggaaaa tcaggacgtg catttgttcg ggatcctcgc gctgcaacac ggcgcggcgg
     1501 cgatcgtgag ctatggcggc gaaccggcgc gcgcgatttc gctgggtggc ccgctgacgc
     1561 cgggcgtgac gatcaaggaa gtgcggtcgc gctcgatcat catcgataga aagggcacgc
     1621 gctccgaagt tttcctgccg ccgaacgcgc ccggcccgac gaattacgtg cgctgattcc
     1681 ctgcgatgaa ggtgcgctga agccgttctg gatcaaacag aactgacggg cgccgcttac
     1741 gaagtgaaat ctgcccgggc cggagctata gaatgcttgc ctgcccgcaa cgaccgttga
     1801 ttgttcctac gaaaggtcca tcgtcgacga tccggataga gcggcagacg ggcatcgaac
     1861 cttatgtcgg gcctgagcgc tgtaacgaca tcaattggaa aggaagatca agtcatgcaa
     1921 atgtggatga agcgccgcta cgaactccag acggcgcaag gtagccagca aacgcgtcgc
     1981 cagcgcggtt tcacgctgat cgaaatcatg gtcgtgatcg cgattctcgg cattctcgcc
     2041 gcgctgatcg tgcccaagat catgagccgc ccggacgagg cgcggcgggt ggcggcgaag
     2101 gcggatattg gctcgatcat gcagtcgctg aatctttatc gactggataa cggccgctat
     2161 ccgacccagg agcagggttt gcgcgcgctg gtcgagaagc cgaccaccga gccggtcccg
     2221 aacaactgga agggcggtgg ctacatggat cgcgttccaa tggacccgtg gggcaaggaa
     2281 tatcagtacc tgaacccggg tgtgcatggt gaggtggaca tattcagcta tggcgccgac
     2341 agcaaaccag gcggcgaggg caatgacgcc gacatcggct cctggcaata ggcttttgta
     2401 accgctactt gccccttaac agaagccaat cgacgtgaac atgcagcaca agccggactg
     2461 ttcagcaccc gatgccgagg ccgcgcgccg cgcgaaggtg cggccgcagg ccggctttac
     2521 gctgctggaa atgctggtgg tgctggtgat cgcgggattg ctggtgtcgc tggcgtcggt
     2581 gaagctcacg cgcaatccgc gcacggatct gaacgaggaa gcgcagcgtc tcgcgctcct
     2641 gctcgaatct gcgggcgacg aagcgcaggt gcgggcacgg cctattgcgt ggctgccgat
     2701 tgagggcggt tttcgcttca ctatccgcac ggaagacggc tggcgtccat tacgcgacga
     2761 cctgctgcgc cagcgccgct gggaaggcgg cgtgaccggc gtgacggtcc agtacgccgg
     2821 tacggataag tccgcggagc gggtggtgtt cggcactgaa gctatcgata ccccgatgga
     2881 agtaacgctc gtctcggcat cgggcagcgt gacgatcgtt ggcaccggca acggccgtta
     2941 tcaggtgcgc tgatgtcaac gccaacgctc gcgcccggcc ctcgtcacgg cctttcatcc
     3001 aaactcaacc gctcgcgcgg tttcacgatg atcgaagtgc ttgtcgcgct ggcgatcatc
     3061 gcggtggcac ttgcggcgtc gctgcgagcc gtgggcgcga tggcgaccgg cgaggcggac
     3121 ttgcatcggc ggctcctggc cggctggagc gccgacaacg aactcgcgca attgcggctc
     3181 acgcatacgt ggccggagat cggttcgcgg acgttcgatt gctcgcaggg caatctcaag
     3241 ctgatttgta ccgaccgcgt gtcgagcacg ccgaatccga ttttccggcg ggtggaagtc
     3301 atcgtggagt cgcctggtat ctccggcaat ctcgcgcaaa tggtcatggt ggtggcgaat
     3361 gaaaccaacc gttcgctcta ggcgggacgt tcgcagccca cggggcgatc gtggcgttcg
     3421 tggctttacg ctgatcgaga tgctggtcgc catcgcgatc ttcgcggt
//
LOCUS       DATGBK010000955         1557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289365, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000955 DATGBK010000000
VERSION     DATGBK010000955.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289365"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..>1557
                     /locus_tag="VKJ77_13300"
     CDS             157..>1557
                     /locus_tag="VKJ77_13300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009665533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HMC46293.1"
                     /translation="MSQTNPSHDRRWQFWIDRGGTFTDIVARRPDGCIVTHKVLSENP
                     ERYRASAVHGIRELLGIASHEAVPAELIDSVRMGTTVATNALLERKGAPTVLAITKGF
                     ADALRIAYQSRPKLFVRNIELPTLLYEQVVEIDERIGARGEIVRELDVEQARQALQSA
                     FDNGIRSCAIVLMHGYRYTAHEQKLKELAEQIGFTQISVSHEVSPLMKLVSRGDTTVV
                     DAYLSPILRRYVGQVEADLGAVPLQFMQSNGGLTDAHRFQGKDAILSGPAGGIVGAAQ
                     VSKLAGFDKIIGFDMGGTSTDVTHYAGEYEREFATEVAGVRIRAPMMKIHTVAAGGGS
                     ICSFDGARFRVGPQSAGANPGPASYRRGGPLTVTDCNVMTGKISARWFPHVFGPDGDL
                     PLDADVVQHKFAEVAAAVEAATGVARTPEEIAEGFLKIAVENMANAIKQISVQRGYDV
                     THYTLACFGGAGGQHAC"
BASE COUNT          329 a          507 c          463 g          258 t
ORIGIN      
        1 tccgactcat gcagaccacc aacaccgaaa gcagcaaccc ggcactgact ccgaccgcca
       61 tcgcaaaacc ctagcaaccg ggcaccaatc cacccccgtc caccggcgcg agcaccccac
      121 ccttcctaag ttatccttta caacaggaaa aatcccatgt cccagacaaa tccctcccac
      181 gaccgccgct ggcaattctg gatcgaccgc ggaggcacct tcaccgacat cgtcgcgcgc
      241 cgccccgacg gctgcatcgt cacgcacaag gtattgtcag agaaccccga gcgatatcgc
      301 gcttccgccg tccatggcat ccgcgagctg ctaggcatcg caagccacga agccgtgccg
      361 gccgagctga tcgatagcgt ccgcatgggc accacagtag ccacgaacgc gctgctcgaa
      421 cgcaagggcg caccaactgt actcgcgatc acgaaaggct tcgccgatgc cctgcgcatc
      481 gcgtatcaaa gccggccgaa gctgttcgtg cgaaacattg aattgccgac gctcctatac
      541 gagcaagttg ttgaaatcga tgagcggatc ggcgcacgcg gcgaaatcgt gcgggaactc
      601 gacgtcgagc aggctcgcca agcgttgcaa agcgcattcg ataacggcat tcgttcctgc
      661 gcaatcgtgc tgatgcacgg ctaccgttac accgcgcatg aacaaaagct caaggagctg
      721 gcggagcaaa tcggttttac gcagatatcc gtcagccacg aagtcagccc gctgatgaag
      781 ctggtttctc gtggtgacac cactgtagtc gacgcatacc tctcacccat cctgcgccgc
      841 tatgtcgggc aggttgaagc cgatctgggt gcagtgccgc tgcaattcat gcagagcaat
      901 ggcggcctca ccgatgccca tcgtttccag ggcaaggatg cgatcctgtc gggaccagcg
      961 ggtggcatcg taggagcagc gcaggtatcg aaactcgcgg gcttcgacaa gatcatcggc
     1021 ttcgacatgg gcggcacatc caccgacgtc acgcactacg ccggcgagta cgagcgcgag
     1081 ttcgccaccg aagtggccgg cgttcgcatc cgtgcgccaa tgatgaagat ccatacagtc
     1141 gcggcgggcg gcggctccat ctgcagtttc gacggcgcgc gttttcgcgt cgggccgcaa
     1201 agcgcgggcg cgaatcccgg accggcttcg tatcggcgcg gtgggccgct gaccgtgacg
     1261 gattgcaacg tgatgaccgg caagatcagc gcgcgctggt tcccgcacgt gtttgggccg
     1321 gacggcgacc tgccgctcga cgccgatgtc gtgcaacaca agttcgcgga ggtggcggcg
     1381 gcggtggaag ccgcgaccgg cgtcgcgcga acgcctgaag aaattgcgga aggcttcctg
     1441 aagatcgcag tcgagaacat ggcgaacgcg atcaagcaga tctccgtgca gcgcggctat
     1501 gacgtcaccc actacacgct cgcgtgtttt ggcggcgcgg gcggtcagca tgcgtgc
//
LOCUS       DATGBK010000956         3428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_149803, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000956 DATGBK010000000
VERSION     DATGBK010000956.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149803"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(127..1341)
                     /gene="purT"
                     /locus_tag="VKJ77_13305"
     CDS             complement(127..1341)
                     /gene="purT"
                     /locus_tag="VKJ77_13305"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HMC46294.1"
                     /translation="MKQPVKIGTPLTPGATRVMLLGAGELGKEVIIALQRLGVETIAV
                     DRYADAPGHQVAHRSHVIDMTDGAALRALIEAERPHLIVPEIEAIATDTLAEIEAERL
                     AVVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAESLDEMTAAIGKIGFPCVVKP
                     VMSSSGKGQSVLKSAADIEPAWQHAMAGGRVNHGRVIVEGFIDFEYEITQLTVRAVSP
                     ETGDLQTYFCEPIGHVQVAGDYVESWQPQAMSAAALAKSRDIAEKVTTALGGRGLFGV
                     ELFVRGDDVWFSEVSPRPHDTGLVTLATQRFSEFDLHARAILGLPVDTTLRAPGASAV
                     IYGGLDEVGVAFEGVADALAVPDSDLRLFGKPESFAKRRMGVALATGRDTDEARERAK
                     LAASKVRPVSAR"
     gene            1684..2292
                     /locus_tag="VKJ77_13310"
     CDS             1684..2292
                     /locus_tag="VKJ77_13310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HMC46295.1"
                     /translation="MQPSRSQPARVSARSRVHAAFPRSRPPFAAVVSILTLAFGAALA
                     GCTMPTHPDSAAPPTDPYNPAATQLLDDTQWQLTSWTNADGKTRPVPSNPAGAAGGSA
                     GGAAITLNFSTQGGQRKTNGFSGCNRFAGTYDLAGGELSFGPLASTRMACAPGPGSAL
                     EQPFLQGLADIEKTGVQMQPPQQLKITLKSGDVMTFIQGAQP"
     gene            2705..>3428
                     /locus_tag="VKJ77_13315"
     CDS             2705..>3428
                     /locus_tag="VKJ77_13315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HMC46296.1"
                     /translation="MHTVVFGWFGASAVWFIPLLWRIVKSVLPNGGGLRGPGTIRLWL
                     GFFCVLLASCALEAALFHSFAFAADVDHLGHALLLGLGGHAGVVSTPAALSVGAGAAV
                     VFLISLPWLCGFQWRETLGWANGAFGLGLKPEWFTQRERTVREKPARARASRDKAETR
                     AASSGLGSFKAGSAVGSGVAASGRTSHDAPALGLPTATQRQGGRYQRPTVWRPQPARR
                     SDAERPLRGPEAARPIEPLSPTH"
BASE COUNT          581 a         1118 c         1060 g          669 t
ORIGIN      
        1 ggcgccgccg caacaccgca tccggccaaa ccaaccaacg tcgcgcacag cgcgaccatt
       61 gcacaccatt tcacttgaaa cctccgtgcc gctcgcgaaa agctcgccgc cagcggcgtg
      121 ttgccgtcat cgagcggaga cgggtcttac cttagacgcg gccagcttcg cgcgttcccg
      181 cgcttcgtcg gtatcgcgtc cggttgcgag cgcgacaccc atgcggcgct tcgcaaaact
      241 ttcaggttta ccgaacaggc gcaggtccga gtcgggcacg gcgagcgcgt cggcgacgcc
      301 ttcgaacgcg acgcccactt cgtccagccc gccataaatc accgccgatg cacccggcgc
      361 acgcaaggtt gtatcgacgg gaaggccgag gatcgcgcgc gcgtgcaggt cgaattcaga
      421 gaagcgctgc gtggcgagcg tgacgagacc cgtgtcatgc ggtcgcgggc tgacctcgga
      481 aaaccagacg tcgtcgccgc gcacgaacaa ttcgaccccg aacaatccgc ggccaccgag
      541 cgccgtagtg actttctcgg caatatcccg agattttgcg agcgccgcgg cgctcattgc
      601 ctgcggttgc cacgattcca catagtcgcc cgccacctgg acatggccga tcggctcgca
      661 gaaatacgtc tgcagatcgc ccgtttccgg actgaccgcg cgcacggtga gctgcgtgat
      721 ctcgtactcg aagtcgataa acccttccac gatcacacgc ccatgattga cacggccgcc
      781 ggccatggcg tgctgccagg ccggttcgat atctgcggcg cttttgagga cggactgccc
      841 tttgcccgac gacgacatca ccggcttcac cacgcaagga aaaccgatct tgccgatggc
      901 cgccgtcatc tcgtccagcg attccgcgaa cgcataaggc gacgtcggca gcccgagcgt
      961 ttcggcagcg aggcggcgaa taccttcgcg gttcatcgtg agttgcgtcg cgcgcgcggt
     1021 cgggatcacg acggcgagcc gctcggcttc gatttcggcg agggtatcgg ttgctatggc
     1081 ctcgatctcc ggcacgatca aatgcggccg ttcagcttcg atcaacgcgc gcaatgccgc
     1141 gccgtcggtc atatcgatca cgtgcgagcg atgcgcgacc tgatgaccgg gggcatcggc
     1201 gtaacggtcg accgcgatcg tctccacgcc gagccgctgc aacgcgatga tcacctcctt
     1261 gccgagttcg cccgcgccga gcagcatcac gcgcgtcgcg ccgggcgtga gcggcgtgcc
     1321 gattttcacc ggctgcttca tttcctgagc gtcggattga ggggaagaaa cggcggacgc
     1381 agcggacttc gcgctctgca tggatgctcc agaaaaagag gcctgttaag cccgcgatgt
     1441 taacacgcgc acccttttcc ggacgcgatc ggtgttgcgt ttccgggcgt ggccgtccag
     1501 atccgtgatg gcgtcggggt tggacgacgg ctgtctgcgt gagggctttc gcttcatcga
     1561 acggaacgct cggctaactt ttctttacat gttgcaatca ctttgccgca atctgccttg
     1621 gtcaatctta ggacgagtgc gataccctta cggttttgcc agccccaagg aaattccatg
     1681 tcgatgcagc cttcccgttc gcaacctgcg cgtgtttcgg cgcgcagccg ggtccatgct
     1741 gcgttcccgc gttccaggcc cccatttgcc gccgtggtgt cgatcttgac cctcgctttc
     1801 ggcgctgcgt tagcaggttg cacaatgccg acacatccgg acagcgccgc gccgccgacc
     1861 gatccttaca acccggccgc aacccagctt ctcgacgata cgcaatggca actcaccagt
     1921 tggaccaatg ccgacggcaa gacgcgcccg gtcccgtcca atccggctgg cgcggctggc
     1981 ggtagcgctg gcggagcggc gatcaccctg aatttttcga cgcaaggcgg ccaacgcaaa
     2041 acgaacggct tttccggctg caaccgtttc gccggcacct atgatctggc cggcggcgag
     2101 ctttctttcg gcccccttgc cagcacgcgg atggcctgcg cgccgggacc gggcagcgcg
     2161 ctcgaacaac cgttcctgca aggtctcgcg gatatcgaaa agaccggcgt gcaaatgcag
     2221 ccgccgcaac aattgaagat cacgctcaag agcggcgacg tgatgacgtt catacaaggc
     2281 gcgcagcctt gagatcgatg aaagccggtt tggagagttg aggtttttta gggtacaggt
     2341 cgaggggagg ctgttgcgtg tcaggcggtc gtcccggagt ctgttggacg ttggacgttg
     2401 gcgcttggcc gagtcagggc gttcggcatt caggcgtttg cggtcgttaa acgcgttggt
     2461 ttttcgtttg acagttcatt ggctgttcgt cttcgagacg gaatatgaac atccgatgaa
     2521 cgcccaccta acccggccaa cactgtctcg atgtaccaat cgtcacctgc ggccgaatgc
     2581 ttgatcgctt gaccaccgcc cgccctcgcc gccttcatgg cggttaaact cggcggtact
     2641 gattcatatt tgtctgagcc tgggttcgct gctcacatcg cttacatcat tcctggttcc
     2701 ttgcatgcac acggtagttt tcggctggtt cggtgcttcg gccgtctggt tcatccccct
     2761 tctctggcgc atcgtcaagt ccgttctccc caacggcggc ggcctgcgcg gtccgggcac
     2821 gatccggctt tggctcggtt tcttctgcgt gctcctcgcg agctgcgcgc tcgaagccgc
     2881 tctgtttcat tcgttcgcat tcgcagccga tgtcgaccat ctcggccacg cgctgctgct
     2941 cggcctgggc ggacatgccg gcgtcgtcag tacgccggct gcgctgagcg tgggtgccgg
     3001 tgcggcagtc gtgtttctca tcagcttgcc gtggctctgc gggttccaat ggcgcgaaac
     3061 ccttggctgg gccaacggcg cgttcggcct gggcctcaaa cccgagtggt tcacgcaacg
     3121 ggaacggacg gtccgcgaga aaccggcgcg tgcccgggca tcgcgcgaca aggcggaaac
     3181 gcgggcggca agcagtgggc tcggcagttt caaggcggga agcgcggttg ggagcggtgt
     3241 cgcagcttct ggtagaacct cgcacgatgc tccggcactc ggcttgccga ccgcaacgca
     3301 acgccagggc gggcgctatc agcggccgac cgtctggcgt ccgcagccgg cacggcgtag
     3361 cgacgcagag cggccgttgc gcggacccga ggctgcgcgc ccgatcgaac ccctgtcgcc
     3421 gacacatc
//
LOCUS       DATGBK010000957         1897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_149807, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000957 DATGBK010000000
VERSION     DATGBK010000957.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149807"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1208)
                     /gene="fabF"
                     /locus_tag="VKJ77_13320"
     CDS             complement(<1..1208)
                     /gene="fabF"
                     /locus_tag="VKJ77_13320"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HMC46297.1"
                     /translation="MSRRRVVVTGLGLISPVGNTVADGWANLVAGKSGIAEITKFDAT
                     NFSTRFAGEVKGFNVEDYMPAKEARHMDTFIHYGIAAGVQAMRDSGLEITEENSERVG
                     VVVGSGIGGLPMIEVTQTELLNRGPRRISPFFVPASIINMISGHLSIRFGLKGPNLAI
                     VTACTTGLHCIGEGSRLIEYGDADVMICGGSEATVSPLGVGGFAAARALSQRNDDPAT
                     ASRPWDKDRDGFVLGEGAGVMVLEEYEHAKARGAKIYAEVSGYGMSGDAYHMTAPPED
                     GDGARRSMRNALKNAQVNADEVHYLNAHGTSTQLGDLAETIGIKNAFGDHAKKIVVNS
                     TKSMTGHLLGGAGGLESVFTVLALHHQISPPTMNIFNQDPQCDLDYCANEARKMKIDV
                     ALKNSFGFGGT"
     gene            complement(1355..1594)
                     /gene="acpP"
                     /locus_tag="VKJ77_13325"
     CDS             complement(1355..1594)
                     /gene="acpP"
                     /locus_tag="VKJ77_13325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012735022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HMC46298.1"
                     /translation="MDNIEQRVKKIVAEQLGVAEAEIKNEASFVNDLGADSLDTVELV
                     MALEDEFGMEIPDEEAEKITTVQQAIDYARANVKA"
BASE COUNT          377 a          591 c          512 g          417 t
ORIGIN      
        1 gtgccgccga aaccgaacga gttcttcaac gccacgtcaa tcttcatttt ccgcgcttcg
       61 ttcgcgcagt aatccaggtc gcattgcggg tcttggttga agatgttcat ggtgggcggc
      121 gagatctggt ggtgcagcgc cagcacggtg aagaccgatt ccagtccgcc agcgccgccg
      181 agcagatggc ccgtcatcga cttggtggaa ttcaccacga tcttcttcgc atggtcgcca
      241 aaggcattct tgatcccgat ggtctcggcc agatcaccga gctgcgtgga tgtgccatgc
      301 gcgttcaggt agtgcacttc gtccgcattg acctgcgcgt ttttcaacgc attgcgcatg
      361 ctgcggcgcg cgccgtcgcc gtcttccggc ggtgcggtca tgtgatacgc gtcgccgctc
      421 atgccgtagc cgctgacttc ggcgtagatc ttcgccccgc gcgccttcgc atgctcatat
      481 tcttcaagca ccatcacgcc ggcgccttca cccagcacga aaccgtcgcg atccttgtcc
      541 cacggacggc tagcggtagc cgggtcgtcg ttgcgttgcg acaatgcgcg cgcagccgcg
      601 aagccgccga cacccagtgg cgatacggtc gcttcagagc cgccgcagat cattacgtcg
      661 gcgtcgccgt attcgatcag ccgcgagcct tcgccgatgc aatgcaaccc cgtcgtacag
      721 gcggtcacga tagccaggtt cggtcctttc aaaccgaagc ggatggagag atgccctgag
      781 atcatgttga tgatcgacgc cggcacgaag aacggcgaaa tccggcgcgg gccccgattc
      841 agcaattccg tttgcgtgac ttcgatcatc ggcaagccgc caattcccga gccgaccacg
      901 acacccacgc gctccgagtt ttcctcggta atttccagtc cgctgtcccg catggcctgc
      961 acaccggcag caatgccgta atggataaag gtatccatgt ggcgcgcttc cttggccggc
     1021 atatagtctt cgacattgaa gcctttgact tcgccggcaa agcgcgtgga gaagttcgtg
     1081 gcatcgaact tcgtgatctc ggcaatgccc gacttgccag cgaccagatt ggcccagccg
     1141 tcggcaacgg tattgccaac aggcgaaatc agcccaaggc ctgtaacaac aacacgacga
     1201 cggctcacgg taacccctta tccataaatg acaaaaagca aaagccacaa gattcacagg
     1261 aaattgccct gtgagccctg tggctgttaa atcggttcga atcgcgacag agcgtcaacc
     1321 ccgaatagcg tagaagcagc ttgcgcgtcg ggctttaggc cttgacgttg gcgcgagcgt
     1381 agtcgatcgc ctgctgaacc gtcgtgatct tctcagcttc ttcgtcagga atttccatgc
     1441 cgaattcgtc ttcgagagcc atcacgagtt cgacggtgtc gagcgagtca gcgcccagat
     1501 cgttgacgaa cgaagcttcg ttcttgattt cggcttcggc gacgcccagt tgttcggcga
     1561 cgatcttctt cacgcgctgt tcgatattgt ccatgcagcc ctccgaggga aatgtagttc
     1621 aaaaacacaa gtgcgcgcat tttatcaggt ttgtacccgt aaatacccac gcacggaatc
     1681 agctttgttt ggcgcgtgac atgcctttga tgcccgtcac gcccttttca gcgcccttac
     1741 ctgcttacca cttctgacag cgaatctcgc ctctcttaca ccgcgctttg aatcagcact
     1801 ttgcgcaccc gccacacggc gcggatatta acgaaatgcc tgtcacatgt acatgccgcc
     1861 gttcacatgg agcgtggtgc ccgtgatgta ccccgcg
//
LOCUS       DATGBK010000958         1590 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_312464, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000958 DATGBK010000000
VERSION     DATGBK010000958.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312464"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..803
                     /locus_tag="VKJ77_13330"
     CDS             <1..803
                     /locus_tag="VKJ77_13330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018432067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HMC46299.1"
                     /translation="PPGYYRVKPGDTLYRIALENGQNYRDIASWNNMTNPNQIEVDQL
                     LRVAPPGANLAAATPGVSTAPIVGGGVQAQPLNNTYGANTSAAPGTAPGTNGYANGST
                     PPAPNYGTSSGMGTMPGTAAPGLAMTQPPGTGVDNGAAAVPAAQPAFIWPARGPILGT
                     FDDAKNKGLNIGGAAGDPVNAAADGRVVYSGNGLRGYGNLVIIKHDATFLTAYAHNSA
                     LMVKEGDAVTKGQKIAEMGSSDSDRVMLHFEVRRQGKPVDPLKYLPPQ"
     gene            815..>1590
                     /locus_tag="VKJ77_13335"
     CDS             815..>1590
                     /locus_tag="VKJ77_13335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HMC46300.1"
                     /translation="MPKSKRQPPQAETETISRPTQTTVEDGASNQADESEGETADAEL
                     DSDEDSGANGKDAVEGAADSVPDVDDFKSILQAELTADTIQHYLNRISVKPLLTVEEE
                     QRYSRLAKAGEFEARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKF
                     DPTRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSSANS
                     TAAIAPDRRDASIDDIAHLTGKTPEEVTDILALNEHTASL"
BASE COUNT          362 a          475 c          496 g          257 t
ORIGIN      
        1 cgccgccggg ttactaccgg gtgaagccgg gtgacaccct ataccggatc gcactggaaa
       61 acggccagaa ttatcgggat atcgcgtcgt ggaacaacat gacgaacccg aaccagatcg
      121 aagtcgacca gctgctgcgc gtggcgcctc caggcgccaa tctcgcggcg gcaacaccgg
      181 gcgtttctac cgccccgatt gttggtggcg gggtgcaggc ccagccgctc aataatacgt
      241 acggagcgaa tacgtcggcg gcccccggaa cggcaccggg tacgaatggg tacgcaaatg
      301 gcagtacccc gccggcgccg aattacggta cgtcttccgg catggggacc atgccgggca
      361 cagcggcgcc aggcttggcc atgacgcagc cgccgggaac gggtgtcgac aatggcgcgg
      421 ccgcggttcc ggctgcgcaa ccggcgttca tctggccggc gcgcggaccg attctcggca
      481 cgttcgacga cgcgaagaac aaaggcttga acattggcgg cgcagccgga gatccggtca
      541 atgcggcggc cgatggacgg gtcgtctact ccggcaacgg tctgcgcgga tacggcaatc
      601 tcgtcatcat caagcacgac gcaacttttc ttaccgcgta cgcacataac agcgctttga
      661 tggtaaaaga aggagacgcg gtgacaaaag ggcagaaaat cgccgagatg ggcagcagcg
      721 attcggaccg cgtgatgttg catttcgaag tccgccggca gggcaaacct gtcgaccctc
      781 tgaagtattt gccgccgcaa taagcgaaac catcatgccg aaatcgaagc gccagccgcc
      841 gcaagccgag actgagacaa tcagccgacc cacgcagaca acggtggaag acggcgcttc
      901 gaaccaggca gacgaatctg aaggtgaaac ggccgacgcc gagctcgatt cagacgaaga
      961 cagtggcgcg aacggcaagg atgccgtcga gggtgcggct gattccgtgc ccgacgtcga
     1021 cgacttcaag tctattttgc aggccgaact cacggccgac acaatccagc attacctgaa
     1081 ccgcatcagc gtgaaaccgc tgctgaccgt cgaggaagag cagcgctatt cgcggctggc
     1141 gaaagccggc gaattcgaag cgcgccaggt catgatcgag cgcaacctgc ggctggtggt
     1201 cagcatcgcg aaggggtatt tgaatcgtgg cgtgccgctg ctcgatctga tcgaggaggg
     1261 caatcttggt ttgatgcacg cgatcgaaaa attcgatccc acgcgtggtt tccggttttc
     1321 gacgtacgcc acgtggtgga tccggcagag catcgagcgc gcgatcatga atcaagcgcg
     1381 cacggtgcgc ttgcctgttc acgtgattcg cgagctcaat caggttttgc gcgcgaaacg
     1441 ccatctcgaa aaaagctcgg ccaattcgac ggcggccatt gcgccagacc ggcgcgatgc
     1501 gagtattgat gacatcgcgc atctcaccgg caaaacaccc gaggaagtca cagacatcct
     1561 cgcgctcaac gaacacacgg cgtcgctcga
//
LOCUS       DATGBK010000959         1606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_103888, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000959 DATGBK010000000
VERSION     DATGBK010000959.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103888"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..408)
                     /locus_tag="VKJ77_13340"
     CDS             complement(<1..408)
                     /locus_tag="VKJ77_13340"
                     /inference="COORDINATES: protein motif:HMM:NF013219.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HMC46301.1"
                     /translation="MKSVVTVPVAPSRRWPLLPVCLVIVLAALLSLHRLEERLPASLW
                     WQALTAPSSTDLRQLLVHYGDLPRIAVAWLCGAALGLAGVATQQVLRNPLAEPMTLGI
                     FSGSYLGLSIATVYAPGLLMSGRDGVALAGGAVA"
     gene            complement(405..1313)
                     /locus_tag="VKJ77_13345"
     CDS             complement(405..1313)
                     /locus_tag="VKJ77_13345"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-siderophore ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC46302.1"
                     /translation="MNRRAMLSALLGAGALAVTVLSHVAVAGDASVAPPRRVVVLDWG
                     LTEMVLSIGVVPVGIANTRDFRRNFTACDVPASVVDLGLMFQPNMELLFALKPDLIVI
                     SPAHATLRGALERVAPTVTLGRYRSSDTPYSAARAETLQLARLLGCEARAEALLAQAD
                     TVLDHARTALAALPGVSSRPLYMVNFIDEAHVRVFGPNSFYGELMTTLGLRNAAQSGA
                     FSTTGFDVLGSVPAATLLYMKPLASSVANMMKTSPLWHAMPFMNEGRMMGLPRVPPDG
                     CVLSAMFFARVLVDAFEQAGATKEHA"
     gene            complement(1310..>1606)
                     /locus_tag="VKJ77_13350"
     CDS             complement(1310..>1606)
                     /locus_tag="VKJ77_13350"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HMC46303.1"
                     /translation="GEVEAVIAQIWSDVLGIEPIERINRRDNFFELGGDSIFSLQVQR
                     RISRQLSVEVELAALFAAPTLEAFAAVVSTARKGVAEQDRLTDDMQSILSELMQ"
BASE COUNT          340 a          516 c          501 g          249 t
ORIGIN      
        1 tgccactgcg ccaccggcca gcgcgactcc atcgcggccg gacatcagta agccaggggc
       61 atagacggtc gcaatcgaga gccctaggta ggagccagag aagatgccta gcgtcatcgg
      121 ttcggcgagc ggattgcgca gcacttgctg ggtcgccacg ccggcaagtc ccagcgccgc
      181 gccgcacagc caagcgaccg ctatgcgcgg caggtcgcca tagtggacaa gcagctgccg
      241 cagatccgtc gacgagggag ccgtcaacgc ttgccaccac aacgacgccg gcaagcgctc
      301 ctccagtctg tgcagcgata acagcgcagc aagcacgatc acaagacaaa ccggcaggag
      361 tggccagcgt cgtgagggag ccacgggcac agtcacgacg cttttcatgc gtgctccttc
      421 gtcgcgccgg cctgctcgaa ggcatcgacc agcacgcggg cgaagaacat cgcggaaaga
      481 acgcagccat cgggcggaac gcgcggcagg cccatcatgc ggccctcgtt catgaacggc
      541 atggcgtgcc acaaggggct ggttttcatc atgttcgcaa ccgaagacgc aagcggcttc
      601 atgtagagca gggtcgcggc gggcacgcta cccagcacgt cgaaaccggt tgtggagaag
      661 gcgcccgact gggccgcgtt tcgcagcccg agcgtcgtca tcagttcgcc atagaagcta
      721 ttcggaccga acacacgcac gtgcgcttca tcgataaaat tcaccatgta aagcggcctg
      781 ctacttacac ctggtagcgc ggctagcgcc gtgcgcgcgt gatcgagtac cgtgtccgct
      841 tgcgcgagaa gtgcttcggc gcgcgcttcg cagcccagca aacgcgcgag ctgcagcgtt
      901 tcagcacgtg ccgcggaata aggcgtgtcg ctcgacctgt agcgcccgag cgtgaccgta
      961 ggcgcgacgc gttcgagcgc cccccgcagg gtcgcgtgag ccggcgaaat gacaatcagg
     1021 tcaggcttca acgcgaacag caattccatg ttcggctgga acatcaggcc gagatccacc
     1081 accgatgcag gcacatcgca cgccgtgaaa ttcctgcgga agtcgcgggt attcgcgatc
     1141 ccgaccggca ccacaccgat cgacaacacc atctccgtca gtccccaatc gagcactact
     1201 acacggcgcg gcggcgctac ggaagcgtca cccgccacag caacatggga gagtacggtg
     1261 acggcaagtg cgccggcgcc cagcagcgcg gaaagcatgg cgcgtcggtt cattgcatga
     1321 gttcggagag aatggattgc atgtcgtcgg tcaagcggtc ttgttctgcc acgcccttcc
     1381 gcgcggtaga cacgacagcg gcgaacgcct cgagcgtcgg cgcggcgaat agcgcagcga
     1441 gttcgacttc gaccgataac tgccgcgaaa tccgccgctg gacctgaagg ctgaaaatgg
     1501 agtcgccgcc gagttcgaag aagttgtcgc gacggtttat gcgctcaatc ggttctatcc
     1561 caaggacgtc ggaccagatc tgcgcgatga ccgcttctac ttcgcc
//
LOCUS       DATGBK010000960         2462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_266194, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000960 DATGBK010000000
VERSION     DATGBK010000960.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266194"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..903)
                     /locus_tag="VKJ77_13355"
     CDS             complement(<1..903)
                     /locus_tag="VKJ77_13355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020703357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46304.1"
                     /translation="MLVEFRPAFFSVSIGNNMHTTSNQAAHQPSLAVLLASSFAFIIV
                     QLDVTIVNVALPRMGMELGAEVSTLQWVVDAYTLGFAAFLLSAGVVGEKFGSKRAFLT
                     GFGLFTLASVACAVAPSVMALNMARAVQGVGAALLLPSSLAILNFTYAHDKKMLAKAI
                     GWWTAAGGVSIAAGPVIGGLLLSTAGWRSIFWVNVPICVAGFALTYYVVPRMASKEPS
                     RHFDLPGQLLSVLALIGFIGAVIEAHALGFSSMVVRGGFVLAFVAGAAFLMVESRVRA
                     PMLPLTLFHSMRFSGAVLFGVLANF"
     gene            complement(1049..1276)
                     /locus_tag="VKJ77_13360"
     CDS             complement(1049..1276)
                     /locus_tag="VKJ77_13360"
                     /inference="COORDINATES: protein motif:HMM:NF027481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4863 family protein"
                     /protein_id="HMC46305.1"
                     /translation="MRNGVESGLYQELARLIRLGVQDGWAAEAKVAGPRYCRSQIGAS
                     REERYFFSITAVLMDTTDNTQNNPEGSFCGG"
     gene            complement(1477..2187)
                     /locus_tag="VKJ77_13365"
     CDS             complement(1477..2187)
                     /locus_tag="VKJ77_13365"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007738136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC46306.1"
                     /translation="MSTSQKVVVVTGASQGIGADIVKAFRKRDYRVVATSRSIKPSED
                     PNILTVAGDIGDAAVAQRVISEGVARFGRIDTLVNNAGIYIGKPFTENTAEDYAAVMN
                     VNMAGFFYITQLAIAEMEKHSSGHVVSVTASIGDVAISGIYSVLAALTKGGVSAATKS
                     LAIEYAKKGIRVNAVAPGVIKTPMHAPETHEMLGSFHPLGRIGEMSDISDAILYLDSA
                     SFVTGEILHIDGGQSAGR"
BASE COUNT          507 a          755 c          720 g          480 t
ORIGIN      
        1 gaagttagcc agcacgccaa acaacacggc gcccgaaaaa cgcatgctat ggaacagcgt
       61 cagcggcagc atcggcgccc gcacgcggct ctcgaccatc aggaaggcag cgccggccac
      121 gaaggccagc acaaagccgc ctcgcaccac catgctggaa aagcccagtg catgagcctc
      181 gatcaccgcg ccgatgaagc cgatcagcgc gagcaccgac agcagttggc caggcaggtc
      241 gaagtggcgc gacggttcct tgctcgccat gcgcggcacg acgtagtacg tcagcgcaaa
      301 gccggccacg cagatcggca cgttgaccca gaagatgctg cgccagcccg ccgtcgacaa
      361 tagcaagccg ccgatcacgg gaccggccgc gatcgatacg ccgccggccg ctgtccacca
      421 gccgatggcc ttggccagca ttttcttatc gtgggcatac gtaaaattta ggatggccaa
      481 cgaactgggc aggagtaacg ccgcgcctac gccttgcacc gcgcgggcca tgttgagtgc
      541 catgaccgac ggcgccacgg cgcaggcaac cgacgccagc gtgaacaggc cgaaaccggt
      601 caggaacgcg cgcttggagc cgaatttttc gcccaccacg ccggccgaca gcaggaaggc
      661 ggcgaagccc agcgtgtagg cgtcgaccac ccattgcagg gtgctgacct cggcgcccag
      721 ctccatgccc atcctgggca gtgccacgtt gacgatggta acgtccagct ggacgatgat
      781 gaaggcgaag ctgctcgcca gcagcaccgc cagtgacggt tggtgcgccg cctggtttga
      841 tgttgtatgc atgttgtttc ctatggacac gctgaagaat gccggcctga attccacgag
      901 catcgtcctg ctgccgctgt ggaactacct gatggaacac tggcgccggt ggcgtccagc
      961 cgccataaca gcagccattc ggacccgcga gcgcggcgcc ttaattgagc ggcgccgccc
     1021 agttgatctt gccgtatggg cacaagtgtt agccgccgca gaagctgcct tccgggttgt
     1081 tctgggtgtt atcggtggtg tccatcagga ccgccgtgat gctgaagaag tacctctcct
     1141 cgcgcgacgc cccgatttgc gagcgacagt aacgcgggcc agcgactttg gcctcggccg
     1201 cccagccgtc ttgcactccg aggcgaatca gtcgcgccag ctcctggtac aacccactct
     1261 caacgccatt tcgcattcag ttgtcgcttg acgcaggtgc tcgcggtcat gtgcttgacc
     1321 tcgttcagaa gcgggatgaa acgctcaaca agttagtttc tgctactact gaactgagtc
     1381 tgggacaatc cagttcgtcc tcgcatcaag cgtcatgtgg cgccttttgc gatagccgca
     1441 aaaggcgccg actagcgggg cccgaagtct tggtgcttag cgaccggcgc tctggccgcc
     1501 atcgatgtgc aggatttctc ctgtgacgaa cgatgccgaa tcaaggtaca ggatagcgtc
     1561 ggagatatcg ctcatctcgc cgatacggcc gagcggatgg aagctaccca gcatttcatg
     1621 ggtttccggt gcgtgcatcg gcgtcttgat gacgcctggc gcgacggcat ttacgcgaat
     1681 gcctttcttc gcgtactcga ttgccagcga cttcgtcgcc gcgctcacac cacccttcgt
     1741 caaggctgcc agtaccgaat agatgccgct gatcgcaacg tcaccaatgc tagccgtcac
     1801 gctaaccacg tggccgctcg aatgcttttc catttcggcg atggcgagtt gcgtgatgta
     1861 gaagaagccc gccatattca cgttcatcac cgcggcgtag tcttcagcgg tgttttcggt
     1921 aaagggcttg ccgatgtata tgccggcgtt gttcaccagc gtgtcgatcc ggccgaacct
     1981 ggcgacgcct tcggaaatga cgcgttgggc gaccgctgca tcaccaatat caccggcaac
     2041 cgtcaggatg ttcggatctt ctgacggttt gatcgagcgc gaagttgcaa caacgcggta
     2101 gtcgcgtttg cgaaatgcct tcacgatgtc ggcaccaatg ccttgcgatg cgccggtaac
     2161 gacgacaacc ttctgtgatg tgctcatgct ttactccaaa aaagtagttg ttggctttga
     2221 cgccaatcgg accgatggct ccgtggcatc cattgaacgt ggcaacgaga agcgccgtgc
     2281 gcaggcaagc tcttgagcca gaacaacgag ttaattcgtc agagggcgcg cctgcgacat
     2341 tcctgatttt tcgctccact catcgcacac gcggtatcgg atgaataggg gttaagtgga
     2401 atcgatggta gccgaatgca atatctgcaa caattggcca tcgcggcaaa tcatctttgc
     2461 cg
//
LOCUS       DATGBK010000961         2179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_35282, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000961 DATGBK010000000
VERSION     DATGBK010000961.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35282"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1151)
                     /locus_tag="VKJ77_13370"
     CDS             complement(<1..1151)
                     /locus_tag="VKJ77_13370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017332909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HMC46307.1"
                     /translation="MLNRIKNPDVTKALANIVWLGLERLTQIAVAIAISGLLARYFGP
                     DVFGKWQYANTLLLVLSPITWVCGAEILVPTIVNRTPSQLGTVLGSAFVLRMGVSAAA
                     LLVTWILTWIGIATGFTDPLVGAMLAGLAVTMLFREPFVGVINAWLQSMTYSKPQLLT
                     SMLTAIAKAALVYVLVRAAASPARFGWLWALEAAVIGGVLMLYYVHRHDGKLGWHIDR
                     SLFRHFASAGTVFWLGLICMYLFLKLDRLMLERHISFADLGRYSAAQQLNENWITLAL
                     MLAQTIAPAFVYRVHDAVQLKRNVGRLIAMTAALMIGGAIVLDLLAGFIISRVFGPAY
                     TESISIFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLAKWLLALAVAFVV"
     gene            1689..>2179
                     /locus_tag="VKJ77_13375"
     CDS             1689..>2179
                     /locus_tag="VKJ77_13375"
                     /EC_number="5.4.2.2"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192086.1"
                     /note="catalyzes the interconversion of alpha-D-mannose
                     1-phosphate to alpha-D-mannose 6-phosphate and
                     alpha-D-glucose 1-phosphate to alpha-D-glucose
                     6-phosphate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HMC46308.1"
                     /translation="MSQSPQVPVTQSIFKAYDIRGIVGKTVDAGVARKIGRAFGSEIR
                     KQGGDSVVVARDGRLSGPELVGALADGLREAGVDVVDLGMVPTPVGYFGASVPLALPA
                     GERSVDSCIVVTGSHNPPDYNGFKMVLRGAAIYGDQIQALYQRIVNDDFTSGAGTYTE
                     YDI"
BASE COUNT          427 a          641 c          698 g          413 t
ORIGIN      
        1 accacgaaag cgaccgccag cgcgagcagc cacttcgcga gcaacacaaa tttcgcctgg
       61 tatttaagca cgacgagatt cccgatcgct tcgatgccag ccggcaccga aagccacacg
      121 gcccagcgga aaatgctgat ggattcggta taagccggcc cgaacacgcg cgagatgatg
      181 aaacccgcga gcagatccag tactatcgcg ccgccgatca tcagcgctgc cgtcatggcg
      241 atcaaccggc cgacgttgcg cttcagttgc actgcatcgt gcacgcggta cacgaacgcc
      301 ggggcgatgg tctgcgcgag catcagcgcg agcgtgatcc agttttcgtt gagttgctgc
      361 gcggcggaat aacggccgag atcggcgaac gaaatgtggc gttcgagcat gagccggtca
      421 agcttcagga acaggtacat acaaatgagg ccgagccaga acaccgtgcc ggcgctggcg
      481 aagtggcgga acagcgagcg gtcgatgtgc cagccgagct tgccgtcgtg tcgatgtacg
      541 tagtaaagca tcaacacgcc gccgatgacc gccgcttcca gcgcccacag ccagccgaag
      601 cgcgccgggc ttgccgctgc gcgcacgagc acgtacacca gtgccgcttt ggcgatcgcc
      661 gttagcatgc tggtcagcaa ttgcggtttg ctgtacgtca tgctttgcag ccacgcgttg
      721 atcacgccga cgaacggctc gcggaacagc atggtcacgg cgaggccggc gagcatggcg
      781 ccgacgaggg gatcggtgaa acccgttgca atgccgatcc aggtcaggat ccatgtcacc
      841 agcagcgccg ccgcggatac gcccatgcgc aacacaaacg cgctgccgag caccgtaccg
      901 agctggctcg gcgtgcgatt cacgatggtc ggcacgagga tttcggcgcc gcacacccag
      961 gtgatgggcg agagcacgag cagcagcgtg ttggcgtatt gccatttgcc gaagacatcc
     1021 gggccaaagt agcgcgcgag cagcccgctg atggcaatgg cgaccgcgat ctgcgtgagg
     1081 cgttcgagac cgagccagac gatgttcgcc agcgccttgg taacgtcggg gttcttgatc
     1141 cgattcagca tcagcgggcg gcgcctgacg ttacggcgga tgtcgtagcc agtgtcttgg
     1201 ccattgcagt gtccatcgca gtggccatga taggcatggc gcttgcggta aaacagccgc
     1261 ccgggcttgc tgcaatcctt acagccatcc agtcgggagc cgtcaaccta ggtgcggttt
     1321 cccgccattc ggtgtgacgt ttgtacttcg cagtgaaaaa gcgtccgggc attggattag
     1381 aatatttgcg caggtccgcg cggaaagact gcgattatag gtgcgaacag tgcgcgcaac
     1441 cgcgtggttg acgcgcggcc gacactcgct gaggggggcc cgaaggggtg ccagcgggtt
     1501 cgaggccacg cgatacgaat ttctttcgtt attttttcgc attcgtccgg tattgtttct
     1561 ggccgttcgt gcgttggccg attcaggttt ttatcgttgg ccgcaggtct gtatcaaggg
     1621 gtctccgtga cccgggacgc ttcgggatgc cccggaacca tttaaattat tagtcaggta
     1681 gccattccat gagccagtca ccgcaagtac cagttaccca gtccattttc aaggcttacg
     1741 acattcgcgg gatcgtgggc aaaaccgtcg atgccggcgt cgcgcgcaaa atcggccgcg
     1801 cattcggcag cgagatccgc aaacaaggtg gcgactcggt cgtcgtggcc cgtgatggcc
     1861 gtctgtcggg cccggagctt gttggcgcgc ttgctgacgg cttgcgtgaa gccggcgtgg
     1921 acgtggtcga ccttggcatg gtgcctacgc ccgttggcta tttcggcgcc agcgtgccgc
     1981 tcgcgctgcc tgcgggcgag cgctcggtgg attcgtgcat tgtggtaacg gggagccaca
     2041 atccgcccga ctacaacggc ttcaagatgg tgctgcgcgg cgctgcgatc tatggcgacc
     2101 agatccaggc gttgtatcag cgcattgtga acgacgactt cacgagcggt gcgggcacgt
     2161 acaccgaata cgatatcca
//
LOCUS       DATGBK010000962         1991 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289488, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000962 DATGBK010000000
VERSION     DATGBK010000962.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1991
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289488"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /locus_tag="VKJ77_13380"
     CDS             <1..632
                     /locus_tag="VKJ77_13380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC46309.1"
                     /translation="LAGCRFCFDALNRAWLPERDSAGRSSVPGVYLAGDGAGIAGADA
                     AELAGRRAALAMLEDIGHRAGNADVQAQAAKLDRQLANIAEFRIGLEQAFSPPADCAS
                     HWPDDMTVCRCEEIDAGTLRRCIRAGEASEVNRLKALTRVGMGRCQGRMCGAAAAELL
                     SAETGKPIGEVGRLRGQAPIKPVPLSIAMTDEAEEADDLAAIQEHARDE"
     gene            625..1743
                     /locus_tag="VKJ77_13385"
     CDS             625..1743
                     /locus_tag="VKJ77_13385"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC46310.1"
                     /translation="MNEILRFDVLVVGGGLVGSSTALMLAKRGLKVGLFERRYCGAQA
                     SGVNYGGVRRQGRPTEQLPLAVRARSIWDRLPELVGTDGEFVVSGHLRLARSEADLAA
                     LEAYAQLANPFGLDLQLMSGPTFRRRYPWLGAAAVGGSLCPRDGHANPRVVSPAFARA
                     ARAAGADVREQTAVTNIVRAGERFVVEARHDSGATIEVQSDWLVNAAGAWGNTVAGYF
                     GETIPMEPIYPNMWVTEPLPYFIDHNLGVYGGGIYARQVSRGNVVIGGGRGLGDGEYG
                     QPLTETTRTVMRAACALLPTLKDALLLRTWTGVEGSTPDDNPVIGFSRTTPRLLHAFG
                     FSGGGFLLAPGVGEVLSDLVVDGATSTPIDAFSIERFA"
     gene            1805..>1991
                     /locus_tag="VKJ77_13390"
     CDS             1805..>1991
                     /locus_tag="VKJ77_13390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011548368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46311.1"
                     /translation="MKAFHTVASAGIAALCAAALSTPAQADTKTIYIGMNGGAMEKAY
                     TSEVLPEFEKANNVKVVV"
BASE COUNT          355 a          525 c          705 g          406 t
ORIGIN      
        1 atctggcagg ttgccgcttc tgcttcgatg cgctcaatcg cgcgtggctg ccggagcgcg
       61 attcagctgg tcgcagttcg gtgccgggcg tttatctcgc cggcgatggc gcgggtatcg
      121 cgggtgcgga cgctgcggaa ctggctggcc gtcgtgcggc gcttgcgatg ctggaagata
      181 ttgggcatcg agccgggaac gctgacgtac aggctcaggc tgcgaagctg gatcgccaac
      241 tggcgaacat cgccgaattt cggattgggc tggaacaggc gttttcgccg cccgccgatt
      301 gcgcgtcgca ctggccggat gacatgacgg tgtgtcgctg cgaagagatc gatgccggca
      361 cgctgcgccg ttgtattcgc gctggcgagg cgagtgaggt taatcggctg aaggcgctta
      421 cgcgcgtggg catgggtcgt tgccaggggc gcatgtgcgg cgcggcagcg gccgaattgc
      481 tgagcgcgga gacgggcaaa cccatcgggg aggtcggacg tttgcgcgga caggcgccga
      541 tcaaacccgt gcctttatcg atagcaatga cggacgaggc ggaagaagcg gatgacctcg
      601 ccgccattca ggagcacgca cgcgatgaat gagattttgc ggttcgacgt gctggtggtg
      661 ggcggcggtt tggtgggatc gtctaccgcc ttgatgcttg caaagcgtgg tcttaaggtt
      721 gggcttttcg aacgccgtta ttgcggcgcg caggcgagtg gcgtgaacta cggcggcgta
      781 cgtcgtcaag gccggccgac tgaacaacta ccgctggcgg tgcgtgcacg atcgatctgg
      841 gaccggttgc cggaacttgt cggcacggat ggagagttcg ttgtttctgg gcatttaagg
      901 ttggctcgca gcgaagccga tcttgcggcg ctcgaagcgt acgcgcagct tgccaacccg
      961 ttcggcctcg atctgcagtt gatgagcgga cctacgttca ggcgccgtta cccgtggctt
     1021 ggggcggctg cggtaggtgg ttcactgtgt ccccgtgacg gtcatgcgaa tccgcgcgtg
     1081 gtctcgcccg cgtttgcgcg cgcggcgcgt gcagccggtg ctgatgtccg ggagcagacc
     1141 gcagtgacga acatcgtgcg tgcgggagag cggttcgttg tcgaggcgcg gcacgactca
     1201 ggcgcgacga tcgaagttca gagcgactgg ctggtcaatg ccgctggcgc gtggggcaac
     1261 acggtggccg ggtactttgg cgagaccatt ccgatggagc cgatctatcc gaacatgtgg
     1321 gtgactgagc cgctgccgta tttcatcgat cacaatcttg gggtctatgg cggcggcatt
     1381 tatgcccgtc aggtatcgcg tggcaatgta gtgattggcg gtggtcgtgg gttgggcgat
     1441 ggtgagtatg ggcagccgct cacggagacc acgcgcaccg tgatgcgtgc ggcgtgcgcg
     1501 cttttgccga cgttgaaaga tgcgttgctg ttgcggacct ggacgggtgt ggaaggcagc
     1561 acgccagatg acaatccggt gattggattt agccgcacga caccgcgatt actgcatgcg
     1621 tttggatttt cgggcggcgg gttcctgctt gccccgggag tcggagaggt gctttccgac
     1681 ctggttgtgg acggagcgac gagcacgccg atcgatgcat tttcaatcga gagatttgct
     1741 tgagcgccct caaaaagagt gcgaacaaaa tctggcagga cccccttcta atggagatca
     1801 gtaaatgaaa gcgtttcata cagtcgccag cgcaggcatc gccgccttat gcgcagcagc
     1861 cctctccacg ccagcgcaag ccgacaccaa aactatttac atcggcatga acggcggcgc
     1921 gatggaaaag gcttatacga gcgaggtcct gcccgaattc gaaaaggcca acaacgtaaa
     1981 agtggtagtg g
//
LOCUS       DATGBK010000963         1564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127157, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000963 DATGBK010000000
VERSION     DATGBK010000963.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127157"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1128)
                     /locus_tag="VKJ77_13395"
     CDS             complement(<1..1128)
                     /locus_tag="VKJ77_13395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HMC46312.1"
                     /translation="MKALGTRSRARAGKIRFGITWKMFLAVLIACLTISLTMGYALRL
                     SFENGFLHYVRARDAGRMNAVMAKVTAEYAAHGSWNFLRQHPEEWITLLDAAHDQALR
                     QEMVEAQTNKLPSWRTFPGSASVQQMLGPLSGNEEGSHWGMRLPAPAFADSGVAANRD
                     RSIGRDGPFDEAPYERPPRPPIGRGGRDAPQPATLYDANHDLVATTDSEPPPDVALKP
                     VVYNGKIVGWIAANAPNTLSDAADIAFQAQQARATWEIAGVAIIVAALVAMLLARIVL
                     APVKRLMIATHRLAGGDYTTRVAAGRRDELDRLAGDFNVLADSLQRAERSRRDFIADI
                     SHELRTPLAVLRGELEAIEDGVHAFDRHSLASLQTEVAMLNK"
BASE COUNT          263 a          484 c          502 g          315 t
ORIGIN      
        1 tttgttcagc atcgcgactt cggtttgcag cgaggccagc gaatggcgat caaacgcatg
       61 cacgccgtcc tcgatcgctt ccagttcgcc gcgcaatacc gcgagcggcg tgcgtaactc
      121 atgtgaaata tcggcgatga aatcccggcg cgagcgctcc gcgcgctgca gggaatccgc
      181 tagcacattg aagtcgcccg cgagccggtc cagctcatcc cgtcgtccgg cggcaacgcg
      241 cgtggtgtag tcgccgcccg ccagccggtg cgtcgcgatc atcaggcgct tgaccggcgc
      301 gagcacgatc cgcgcaagca gcatggcaac cagtgcagcc acgatgatag ccacgcccgc
      361 gatctcccag gtcgcacgcg cctgctgggc ctggaacgcg atatcggcgg catcggagag
      421 cgtattgggc gcgttggccg caatccagcc gacaatcttg ccgttgtaga ccactggctt
      481 gagggcgacg tcgggcggcg gttcggagtc ggtcgtggcg accaggtcat ggttggcgtc
      541 gtagagcgtg gcgggttggg gagcgtcacg tcctccgcgt cctatcggtg ggcgcggcgg
      601 acgctcgtag ggcgcttcgt cgaatggccc gtctcgtcct atgctgcggt cgcggtttgc
      661 cgccacaccc gagtcggcga atgccggcgc aggcaggcgc ataccccagt gcgaaccctc
      721 ttcgttgccc gagagggggc cgagcatctg ctgcacgctg gcgctgccgg ggaaggtgcg
      781 ccagcttggc agcttgttcg tctgcgcttc gaccatctct tgcctcaggg cctgatcatg
      841 cgcggcgtcg agcagcgtta tccattcttc gggatgctgg cgcaggaaat tccagctgcc
      901 gtgagcggcg tattcggccg tcaccttcgc catgacggcg ttcatccgcc cggcgtcgcg
      961 cgcgcggacg tagtgcagga aaccgttctc gaaactcagg cgcagcgcgt atcccatggt
     1021 gagggaaatc gtcaggcagg cgatcagcac cgcgagaaac atcttccacg taatgccgaa
     1081 gcgaatcttg cctgcccgcg cgcgggagcg ggttccaagt gctttcaaaa tgttacgcga
     1141 gctgcggcga ggcatttggc cggtggatga ggccgcctgt gcgccgagtg gttcgctatg
     1201 tgtttcgctg tgcattcgcg gattctagtg gaaacaggga agctgcctca cgttcgcgcc
     1261 acattcccgc gcaacctcca cgatttctcc ttcttttgtt cattgtcagt gcgtgatgcc
     1321 tgactagtat tcgatcctgc caatggggtc attcaaccct ctactcaaag ctgattcagc
     1381 tgccgattta ttgtcgattc tggagagaac acatgcaaac cgcgtcgagc gttcagcgta
     1441 cctcatcgaa agtcttcgga cacattgcgt cgccgtcgcg tgatagcggt cgccggtcga
     1501 cggcgaaggc atctgcgact gcctctgcga gcgctgcgca acgggtcatc aagctgcgtg
     1561 gtgc
//
LOCUS       DATGBK010000964         1942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_220052, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000964 DATGBK010000000
VERSION     DATGBK010000964.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220052"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..431
                     /locus_tag="VKJ77_13400"
     CDS             105..431
                     /locus_tag="VKJ77_13400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007732618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HMC46313.1"
                     /translation="MIVEMRVYHCLPGRLPALQERFSTTTLGFFEKYGIEQIGFWTTL
                     IGPSNHALTYLLKWESLAERETKWNAFQADADWIAKRAASEAEKMIVERIENVFLTPT
                     AFSALK"
     gene            555..1439
                     /locus_tag="VKJ77_13405"
     CDS             555..1439
                     /locus_tag="VKJ77_13405"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016835850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC46314.1"
                     /translation="MTRPQRIGFIGLGMMGTPMVQCLAKAGFELFLADADASRADALA
                     KEVGAVRLDADNAASLDALITMLPNSAIVESVLLDGDAQAWSRLLPKGAVVIDMSSSE
                     PERSRKLGATLEKMGLDYLDAPVSGGVKKAKEGTLAILAGGSAAVLDTCRPVLEAMGK
                     SVLHIGAAGSGHAAKALNNYVSAAGLMATVEALHIAERFGIDPASMTDVLNASTGRSN
                     TSQNKVKQFMLSGSYASGFALQLMNKDLKIARALSEAVGYPMKLGMTCTSVWDEVSQR
                     STPATDHTEMYRLLANDE"
     gene            1474..>1942
                     /locus_tag="VKJ77_13410"
     CDS             1474..>1942
                     /locus_tag="VKJ77_13410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC46315.1"
                     /translation="MSRAAQFYIDGQWTDPVSPAWFDLIDPATESKIDRLALGNATDV
                     DRAVAAARKAFPAYSATSVQERIDLLRRIVQVYERRYDEFAEAMRIEMGAPIAFARKG
                     QAARGPAHLNALIAVLENFEFEEQRGTTRVRLEPVGVCGLITPWNWPINQIVVK"
BASE COUNT          408 a          539 c          610 g          385 t
ORIGIN      
        1 tatgcaccgc atgaccgcga aaccgaaggc tggatcgcgc gcctggatgc ggcgccgcgt
       61 tgaatagtcc tcaccctgat tcttacctta cggagagcaa gaccatgatt gtagagatgc
      121 gcgtttatca ctgcttgccg ggccgtttgc ctgcccttca ggaacgcttc agcaccacga
      181 cgctgggttt tttcgaaaaa tacggcatcg aacagatcgg cttctggacc acgctgatcg
      241 ggcccagcaa tcatgcgctt acctatctcc tgaagtggga aagcctcgcc gaacgcgaga
      301 ccaagtggaa cgcgtttcag gccgatgcgg actggatcgc caagcgtgcg gcgagtgagg
      361 ccgagaagat gatcgtcgag cggatcgaga acgtgtttct cacgccgacg gctttctccg
      421 cattgaagta gggcagggaa aatccggatt aattgactat cgactgattg tcatacaatc
      481 gtatagactt atcacatagt gcggcgggtg actgccgcca ctcaattttg ggctctatca
      541 cgaaggcagc acagatgacg cgaccgcaac gaattggctt tatcggtctg ggcatgatgg
      601 gcacgccgat ggtgcagtgc ctggcgaagg ccggctttga actctttctc gccgatgccg
      661 atgcgtcccg tgcggatgcg ttggcgaagg aagttggcgc ggtgcggctg gatgccgaca
      721 acgccgcatc gctcgatgca ctgatcacca tgttgccaaa ttcggcgatc gtggagagcg
      781 tgctgctcga tggcgacgcc caagcgtggt cgcgtctcct gcccaaaggc gcggtcgtga
      841 tcgacatgag ttcatcagag ccggagcgct cgcgcaagct cggcgcgacg ctcgagaaga
      901 tgggcctcga ctatctcgat gcgcccgtct ccggcggtgt gaagaaggcg aaggagggca
      961 cgctcgcgat tctcgccggt ggtagtgcag ccgtgctgga cacctgccgg cccgtgctcg
     1021 aggccatggg caagagcgtg ctccatatcg gcgcggcggg gtcgggacac gcggcgaagg
     1081 cgctgaacaa ttacgtctcg gcggccgggt taatggcaac ggttgaggcg ctgcatatcg
     1141 cggagcgttt cgggatcgac ccggcttcca tgacggatgt gttgaatgca tcgacgggac
     1201 gcagcaatac ctcacagaac aaggtcaagc agttcatgtt gtcgggctcc tacgcatccg
     1261 gctttgcatt gcagttgatg aacaaggacc tgaagatcgc acgcgcattg tccgaagcag
     1321 tgggctatcc gatgaagctc ggcatgacat gcacatcggt ctgggacgag gtgtcacaac
     1381 gttcaacgcc cgctacagat cacaccgaga tgtaccggct gctcgcgaac gacgaataag
     1441 cgacgaataa acccgccaac agagaggacg aacatgtctc gtgcggctca gttttatatc
     1501 gatggacaat ggaccgatcc ggtctcgcca gcctggttcg acctgatcga tccggcaact
     1561 gaaagcaaga tcgatcggct ggcgttgggc aatgcgaccg atgtggatcg cgcggtggct
     1621 gccgctcgca aagcatttcc cgcttactcg gcgacatcgg tgcaagagcg tatcgacttg
     1681 ctccgccgaa tcgttcaggt ctatgagcgg cgctacgatg aattcgctga agcgatgcgc
     1741 atcgagatgg gcgcgccgat cgcgtttgcg cgcaagggac aggcggcgcg cggtccggct
     1801 catctgaatg cgttgatcgc tgtgctcgag aatttcgagt tcgaggaaca gcgcggcacc
     1861 acgcgcgtgc gtctcgaacc cgtaggtgtt tgcggactca ttacgccctg gaactggccg
     1921 atcaaccaga tcgtagtgaa ga
//
LOCUS       DATGBK010000965         1593 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_104025, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000965 DATGBK010000000
VERSION     DATGBK010000965.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104025"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1120
                     /locus_tag="VKJ77_13415"
     CDS             <1..1120
                     /locus_tag="VKJ77_13415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC46316.1"
                     /translation="ATAHVVARTVGEIGLSAVLGDHRGFVNMNRDLLFDDIVHIMPPE
                     RFVLEILETVTFDAKLFKRCAQLRAAGFQFALDDVVSLTEPLHEALPYVDYVKVDFLA
                     TRRADLPELAATLKQHGKTLIAEKIETHQDFEEARKLGFDLFQGYFFARPQVLVTRRS
                     NPSRTALLRLLGVLSGEPDISELEAELKLNPNVVVQLLRLANSSAFKLSRPVSSLREA
                     IVATGTRQISRWTQLLLYADGRHLPWRSDPLVQLVGTRARFMELAARVMWPSSEEFAD
                     AAFMTGIFSLVHVVVDLPPVEIMDLLKLSKEMCAAIVDGQGPLGALLRLSQAAERGDA
                     PELDSSIGSRVDFEVLTPAVLADLQFEAATWFGAHRVE"
     gene            1228..>1593
                     /locus_tag="VKJ77_13420"
     CDS             1228..>1593
                     /locus_tag="VKJ77_13420"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HMC46317.1"
                     /translation="MKRKFAGRMLGVSLGAALAVYALVAYATLKPGDHAPVFTAQASL
                     GGNVYEYSLADELKKGPVVLYFYPAAFTKGCTIEAHEFADAVDEYKALGATVIGVSHD
                     NIDTLKKFSVSECRSKFPVA"
BASE COUNT          276 a          432 c          517 g          368 t
ORIGIN      
        1 ggccactgcc cacgttgtcg cgcgaacggt tggcgagatc ggtttgtcgg cggtgctggg
       61 cgatcaccgc ggcttcgtga acatgaaccg cgacctgctg ttcgacgaca tcgttcacat
      121 catgccgccc gagcgtttcg tgctcgagat tctggaaacc gtcaccttcg acgccaaact
      181 gttcaagcgc tgcgcccagt tgcgcgcggc cggcttccag ttcgcactcg acgatgtcgt
      241 gtcgctcacc gaaccgttgc acgaagcgtt gccttacgtg gattacgtga aggtcgactt
      301 ccttgccacc cggcgcgcgg atctgcctga actcgcggcc acgctcaagc aacatggcaa
      361 gacgctgatc gcagaaaaga tcgaaacgca tcaggacttc gaagaagccc gcaagctcgg
      421 cttcgatcta ttccagggtt acttcttcgc ccgtccgcaa gtgctggtca cgcgccgctc
      481 gaatccctcg cgcacggcat tgctgcgtct tctgggcgtg ctgtcgggcg agcctgatat
      541 tagcgaactc gaggccgagc tgaagctcaa tccgaacgtg gtcgtgcagt tgctgcggct
      601 agccaattcg agcgcgttca aattaagccg gccggtgtcg tcgttgcgcg aggccattgt
      661 cgctaccggt acccggcaga tttcgcgctg gacccagtta ctgctctatg ccgatggccg
      721 ccacttgccg tggcgttcgg acccgctggt gcaactggtc gggacgcgcg cgcgtttcat
      781 ggaactggcg gcgcgtgtca tgtggccatc gagcgaggaa ttcgccgatg ccgccttcat
      841 gactggcatc ttttcgctcg tgcatgtggt ggtggatttg ccgccggtcg agatcatgga
      901 tctgctgaag ttatcgaaag aaatgtgtgc tgcgattgtc gatggccaag gtccgctcgg
      961 cgcgctgttg cgactctctc aggcggcgga aaggggcgat gcgccggagc tggattcgag
     1021 catcggttca cgcgtggatt tcgaggtgtt gaccccggct gtgctcgccg acctgcagtt
     1081 cgaggcggct acgtggttcg gtgcgcatcg ggtggagtag gtattgtagg tattggtatt
     1141 ggtattgcgt tgactgcgtt aataggtgtc gcgggttgtt ccgttgtttg tcatgtcgtt
     1201 cgcgggtcac gaaaatagag gagtcttatg aagcgaaagt ttgctgggag aatgctgggc
     1261 gtgtcgctgg gtgccgcgtt ggcggtgtac gcgctggtgg cttatgcaac gctaaagccg
     1321 ggcgatcacg caccggtgtt caccgcgcag gcgtcgcttg gcggcaatgt ctatgagtac
     1381 tcgctcgcag acgagttgaa gaaggggccc gtggtcctgt acttctatcc ggctgcgttc
     1441 acgaagggct gcacaatcga ggcgcacgag tttgctgatg ccgtcgatga atacaaagca
     1501 ctgggtgcca cggtgattgg tgtgtcgcat gacaacattg atacgttgaa gaagttttcg
     1561 gtgagcgagt gccggagtaa attcccggtc gcc
//
LOCUS       DATGBK010000966         6695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289570, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000966 DATGBK010000000
VERSION     DATGBK010000966.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6695
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289570"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..345)
                     /locus_tag="VKJ77_13425"
     CDS             complement(61..345)
                     /locus_tag="VKJ77_13425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46318.1"
                     /translation="MANKHIGGSFDEFLTEEAILEEVTATAMKRVIAWQIAEEMKAQK
                     ITKTAMAARMNTSRAALNRLLDDTDTSLTLTTLASAAAALGKHFRLELAA"
     gene            complement(374..726)
                     /locus_tag="VKJ77_13430"
                     /pseudo
     CDS             complement(374..726)
                     /locus_tag="VKJ77_13430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011811183.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(911..1594)
                     /locus_tag="VKJ77_13435"
     CDS             complement(911..1594)
                     /locus_tag="VKJ77_13435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC46319.1"
                     /translation="MRDDEATAEVAKNDGAPVPLRRRKAHIRETNEAHLLACAEAVFA
                     ERGLEGASTAMIAERAGLPKANLHYYFPTKLALYRRVLEDLFEDWHRAADTFESSDDP
                     VEAIGGYVRTKMELSRRRPLGSKVWASEIIHGAVHMQDILNERVKPWLETRVIVIDGW
                     IARGLLAPVDAQTLLFMIWATTQHYADFDAQIRALKGKRALSQKAFDASTEEVVKLVI
                     RACGAKSPR"
     gene            1978..3237
                     /locus_tag="VKJ77_13440"
     CDS             1978..3237
                     /locus_tag="VKJ77_13440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HMC46320.1"
                     /translation="MDAVTDSALDTSIRVNGKRLWDSLMTMAKIGATPKGGVCRLALT
                     DLDREGRDLIVSWAKEAGCTVKVDQMGNVFMRRAGRNADAAPVMTGSHADSQPTGGRF
                     DGIYGILGGIEVIRSLNDRGIETEHPVEVVIWTNEEGSRFAPAMVASGVFAGEFTLDY
                     GLSRKDVDGKTIGEELKRIGYAGDEPCGGRKLHAAFELHIEQGPILEAENMTIGVVTD
                     AQGQRWYEITLTGQEAHAGPTPMPRRRDALLGASRVVELVNRIGLDNAPLACATVGMM
                     QVHPNSRNVIPGRVFFTVDFRHPEDAVLEKMDAALRAGVEKIASASGLETQLEQIFYY
                     APIAFDAACVKSVRAAAERFGYAHRDMVSGAGHDACYLSKVAPTSMVFVPCVDGISHN
                     EIEDASEEWIEAGANVLLHAMLERAGR"
     gene            3297..4634
                     /locus_tag="VKJ77_13445"
     CDS             3297..4634
                     /locus_tag="VKJ77_13445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012217800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC46321.1"
                     /translation="MTMKHIGDIASSRLSQEQLSCQFSDVAPLLNATAAAAASSLCHY
                     CYDAPCINACPTKIDIPSFIRKIGNGNMKGAAMDILSANPLGGACARVCPTEILCEGA
                     CVRNHQDDKPVQIGALQRHATDWAMARGEPLFKRAADTGRHVAVVGAGPAGLACAHRL
                     ALDGHRVTLFDARPKPGGLNEYGIAAYKVVEDFAQREVEWLYSVGGIEVKNDVMLGRD
                     VKLSDLRKQHDAVFLAIGLGGVRALELEGETLQGVYNAVDFIEQVRQADALANVPVGR
                     RVVVIGGGNTAIDAAVQSRKLGAETVTMVYRRGVENMGATWAEQEFAQTNGVTIVTHA
                     KPMRLTDADGQVTGVEFENPQGERFVIEADMVLKAIGQTLAPDGLESDMLTLDGSRIA
                     VDSNGRTSLDNVWAGGDCAATGGLDLTVQAVQDGKIAAESIHAFFAATAIKAA"
     gene            4664..5956
                     /gene="preA"
                     /locus_tag="VKJ77_13450"
     CDS             4664..5956
                     /gene="preA"
                     /locus_tag="VKJ77_13450"
                     /EC_number="1.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013212804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017113 - dihydropyrimidine dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0006210 - thymine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006212 - uracil catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HMC46322.1"
                     /translation="MADLRNTFAGIKSPNPFWLASAPPTDKAYNVNRAFEAGWGGVVW
                     KTLGLDPHVVNVSSRYGAVQWNGQRIAGLNNIELITDRPLDINLKEIAEVKRDWPDRA
                     LIVSLMVPCNERDWKWILPLVEDTGADGVELNFGCPHGMSERGMGAAVGQVPEYVEMV
                     TRWVKEGTKLPCIVKLTPNISDIRTGSRAAYKGGADAVSLINTINSIVAVDLDLMAPM
                     PTVDGKGTHGGYCGPAVKPIALNMVAEIARDGETPGLPISGIGGISSWRDAAEFMVLG
                     AGNVQVCTAAMHYGFRIVSDLADGLSNWMDEKGYATLDDIRGRAVQNVTDWKYLNLKY
                     DIKARIDQDKCIECGLCHIACEDTAHQAIMREKDGKRHFEVIDSECVGCNLCMHVCPV
                     EQCITMERVDAGEYANWTTHPNNPARVDADVEESVKAA"
     gene            6089..>6695
                     /locus_tag="VKJ77_13455"
     CDS             6089..>6695
                     /locus_tag="VKJ77_13455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HMC46323.1"
                     /translation="MKQTAHSVDPQFAAGASSSLYNDDLAPTTAAQRTWKWYHFAALW
                     VGMVMNIASYMLAAGLTEEGMSPWQAVLTVLLGNMIVLVPMLLVGHAGAKHGIPYAVL
                     VRSSFGTKGARLPALLRAVVACGWYGIQTWLGGSAIYTLINILAGNTTHGAPLPFLDI
                     SLGQLACFLFFWLIQVYFILRGTDSIRFLESWSAPIKIIMCL"
BASE COUNT         1331 a         1922 c         2082 g         1360 t
ORIGIN      
        1 cggtaaatgt cacgcaaaaa atccccacgt tgtcgggagg tcttcgggtg acatcgcgcg
       61 tcaagcggcc agttcgagcc ggaaatgctt gccgagcgct gcggccgcac tggcgagcgt
      121 ggtaagtgtc aggctggtgt cggtgtcgtc aagcagacga ttaagcgccg cacgactggt
      181 gttcatgcga gccgccatcg ctgttttagt gatcttttgc gccttcattt cctcggcgat
      241 ctgccaagcg atgactcgct tcattgcggt ggccgtgact tcctcgagaa tcgcttcctc
      301 ggtgaggaac tcatcgaagc tgcctccaat atgcttgttt gccatgattt ccgcactcca
      361 ttgcgtgtga gatttaacct ttcctaatct ggcgcaaacg gtctttcgcg atgtccagat
      421 cttcttgcgg cgtttcctga gacttcttga cgaagatgtg catcagaacc atctcgtcgc
      481 cgatgacggt gaacaaaaca cgggcgatac gcctgtgtag gtggatccgc acttcccaca
      541 tgtccttgcc catcttccgt actagcggca taccgagcgg ccagccgatc tgcacggttt
      601 tgatatcctc gccgatcgtc tttctatccg ctgcgccaac ctctctaagc agtcgcggac
      661 gggttcgttg ccggcatttg tgctgaaaaa gcggacatcc aagacgaaat ttactggctt
      721 gatcattcaa agggccgcag ttttggatag cgtatagtac caaaattgat acgtttttac
      781 aggcttttat tgtggttctg gcagtgcaat tcattgcttc tcacgcttcg ataggcgtcg
      841 ggtcggccag agttgatgac gagcccacat tgccacctgt gcgataaacg cgcgtaccgg
      901 aacgccatct tcacctcggt gatttcgcgc cacacgcgcg gatcaccagc ttgaccactt
      961 cctcagtgga ggcatcgaag gccttctgcg aaagcgcacg tttgcctttc agcgcccgga
     1021 tttgcgcgtc gaaatccgcg tagtgctgcg tcgtcgccca gatcatgaac agcagcgtct
     1081 gcgcgtcgac gggggcgagc aggccgcgtg cgatccagcc atcaatcacg atcacccgtg
     1141 tttcaagcca cggcttgacg cgctcgttca agatgtcctg catgtgcacc gcgccgtgga
     1201 tgatctcact tgcccacacc ttcgagccga gtgggcgccg ccgcgacaat tccattttcg
     1261 tgcgcacata accgccgatt gcttcgaccg ggtcatcgct tgactcgaag gtatcggcgg
     1321 cacggtgcca gtcttcaaac aaatcctcga gcacgcgccg ataaagtgcc agcttggtcg
     1381 gaaagtaata atgcaggtta gctttcggca agcctgcacg ttccgcgatc atcgcggtac
     1441 tcgcgccttc gagtccgcgc tcggcgaaca cggcctcggc gcacgccaaa agatgcgctt
     1501 cattggtctc gcgaatgtgt gccttgcgcc gccgcaatgg aacgggcgca ccgtcgtttt
     1561 tcgccacctc ggctgtcgct tcgtcatctc tcatcggttt ccttgcttgg ctctgtgcgc
     1621 cttctccatc ttgatcgcgc ctcattctat gcgctttgac gccactgctg catagcctgt
     1681 cgttccgctc tctcaaagct ctgctgcatt gcaatggcac gcttctcgct atgcttttac
     1741 tctaatcgga aaccccgaaa gacgttgatt tgcaaatatt aatcggctac aacctgtcca
     1801 gttggacagg atttgagagg cggtggattg cgatggattc accgctacga aacggataag
     1861 gtgagcggat acatgttgca ccgctgccgt gcgccagcgc cccaaaaatc gacgccgatg
     1921 caccagattc gtatcagtca aaaccctaaa tcgagcaata cgcaaggaga acgcgaaatg
     1981 gacgcggtaa ccgattcagc gctggatacg tcgatcagag tcaacggcaa acgtctctgg
     2041 gacagcctca tgacgatggc aaaaataggc gcgaccccta agggtggcgt atgccggctt
     2101 gcgctcaccg atcttgaccg cgaagggcgc gacctgatcg tcagttgggc gaaggaagcg
     2161 ggttgcacgg tcaaggtgga ccagatgggc aacgtgttca tgcgccgtgc cgggcgcaat
     2221 gcagatgccg cgccggtcat gacgggttcg catgcggact cgcagccgac aggcggtcgc
     2281 ttcgacggca tctacggcat tctgggcggc atcgaagtga ttcgctcgct taatgatcgc
     2341 ggcatcgaga ctgaacatcc ggtggaagtc gtgatctgga ccaacgagga aggctcgcgt
     2401 ttcgcgccgg ccatggttgc gtccggcgtg tttgccggcg agttcacgct cgactacggg
     2461 ttgtcccgca aggacgtgga cggcaagacg attggcgagg aactcaagcg tattggttat
     2521 gcaggcgatg agccgtgcgg cggccgcaag ctgcatgctg cgttcgaatt gcatattgaa
     2581 caagggccga ttctcgaagc ggaaaacatg acgatcggcg tggtcaccga cgcgcaaggg
     2641 cagcgctggt acgagatcac gctgaccggc caggaagcgc atgcgggtcc cacgcccatg
     2701 ccgcgccgtc gcgatgcgtt gcttggggcg tcgcgggtgg ttgagctggt taaccgcatt
     2761 gggctcgaca atgcgccgct ggcgtgcgcg acggtcggca tgatgcaagt gcatccgaac
     2821 tcgcgaaacg tgatccccgg ccgcgtgttt ttcaccgtcg atttccgtca tcccgaagac
     2881 gcggtgctcg aaaagatgga cgccgcattg cgtgcgggcg tggagaaaat cgcgagcgct
     2941 tcaggactcg aaacgcagct tgaacagatc ttctattacg cgcctatcgc cttcgacgcc
     3001 gcgtgcgtga agtccgtgcg cgcagccgcc gagcgctttg gttatgcgca tcgggacatg
     3061 gtctcgggcg caggacacga cgcgtgttac ctctcgaagg tcgcgcccac gtcgatggtc
     3121 ttcgtgcctt gcgtcgacgg gatcagtcat aacgagatcg aggatgcatc ggaggaatgg
     3181 atcgaggcgg gcgcaaacgt gctgctccac gccatgctcg aacgcgcggg ccgttaggcc
     3241 tgggtgggtt ttagtcgaaa gaccattcgc ttcctcactt tgaagaagga acgtgtatga
     3301 ccatgaagca cattggcgat attgcctcaa gccggctgtc gcaagagcaa ctgtcgtgtc
     3361 aattttcaga tgtggcgccc ttgctcaatg ccaccgcggc ggctgcagca tcgagccttt
     3421 gccactactg ctacgacgca ccgtgcatca acgcgtgccc cacaaaaata gatattccca
     3481 gcttcattcg caagattggt aacggcaaca tgaagggcgc ggccatggac atcttgtcag
     3541 ccaaccccct tggcggcgcg tgcgcacgtg tgtgcccgac tgaaatcctc tgcgaggggg
     3601 catgtgtcag aaatcatcag gatgacaaac cagttcagat cggtgcactg cagcggcacg
     3661 ccaccgactg ggcgatggcg cgcggcgagc cgcttttcaa acgcgcggcg gacacgggac
     3721 gtcatgtggc cgtggttggc gcgggtccgg cgggactggc gtgtgcgcat cgccttgcgc
     3781 tcgacggcca ccgggtcacg cttttcgacg ccaggcccaa gcccggcggc ctgaacgaat
     3841 acggcatagc ggcgtacaag gtggtcgagg attttgccca acgcgaggtg gagtggttgt
     3901 attcggtggg ggggatcgaa gtgaagaacg acgtgatgct cggccgcgat gtaaagctga
     3961 gcgacttgcg aaagcagcat gacgccgtgt tccttgccat tggcctcggc ggcgtgcgcg
     4021 cgctcgaact cgaaggcgag acgctgcaag gcgtgtacaa cgcggtcgat ttcatcgagc
     4081 aggtgcgtca ggcggatgcg ctcgcgaacg tgccggtggg gcgtcgcgtg gtggtgatcg
     4141 gcggcggcaa cactgccatc gatgctgcgg tgcaaagccg caagctgggc gcggaaacgg
     4201 tcacgatggt gtatcgccga ggtgtggaga acatgggcgc tacctgggcc gaacaggagt
     4261 tcgcacagac caacggcgtg acgatcgtca cgcacgcgaa gcccatgcgt ttaaccgatg
     4321 cagatggcca ggtcacgggc gtcgaattcg aaaacccgca gggcgagcgc ttcgtcattg
     4381 aagccgacat ggtgctgaag gcgatcgggc aaacgctcgc gcccgacggt ctggaatccg
     4441 acatgctcac gctcgacggc agccgtatcg cggtggattc gaacggccgt acgtcgctcg
     4501 acaacgtctg ggccggcggc gactgtgcgg ccaccggcgg gctcgacctg accgtacagg
     4561 cggtgcagga cggcaagatt gccgccgagt ccatccatgc gttcttcgcg gcaacggcca
     4621 tcaaggccgc ataaaaaaca ccccacaata agggagccag ctcatggccg atcttcgcaa
     4681 tacgtttgcc ggcatcaagt cgccgaatcc tttttggctc gcctccgcac cgcccacgga
     4741 taaagcctac aacgtcaatc gcgccttcga agcgggttgg ggcggcgtcg tatggaaaac
     4801 gctcgggctc gacccgcatg tggtcaacgt gagttcgcgt tatggcgcgg tgcaatggaa
     4861 tggccagcgc atcgcaggac tgaacaatat cgaactgatc accgaccggc cgctcgacat
     4921 caacctgaag gagatcgccg aggtcaagcg cgactggccg gatcgcgcgc tgatcgtctc
     4981 gctgatggtg ccgtgcaacg aacgcgactg gaagtggatc ttgccgctgg tggaagacac
     5041 cggcgccgat ggcgtcgaac tgaacttcgg ttgcccgcac ggcatgagcg agcgcggtat
     5101 gggcgcggcg gtcggtcagg tgcccgaata cgtggagatg gtcacgcgct gggtgaagga
     5161 aggcacgaag ctgccgtgca tcgtcaagct gacgccgaat atcagcgaca tccgcaccgg
     5221 ttcgcgcgcg gcttacaagg gcggcgcaga cgctgtgtcg ctgatcaaca ccatcaattc
     5281 gattgtcgcg gtggaccttg accttatggc gccgatgccg acagtcgacg gcaaggggac
     5341 gcatggggga tactgcggcc cggcggttaa accgatcgcg ctgaacatgg ttgcggagat
     5401 cgcgcgggac ggggaaacgc ccggtttgcc gatctccggc attggcggca tttcgtcatg
     5461 gcgcgatgcg gccgagttca tggtgctggg agcaggcaat gtgcaggtct gcacggcggc
     5521 catgcactat ggctttcgga ttgtctccga tctcgcggac ggtctttcga actggatgga
     5581 cgaaaaaggc tatgccacgc tcgacgatat ccgcggacgg gcggtgcaga acgtgactga
     5641 ctggaagtat ttgaacctga aatatgacat caaggcgcgc atcgaccagg acaagtgcat
     5701 tgagtgcggc ctgtgccaca tcgcttgcga agatacggcg catcaggcga tcatgcgcga
     5761 gaaggacggc aagcggcatt ttgaagtcat cgattcggaa tgcgtcggct gcaatttatg
     5821 catgcatgtg tgcccggtcg agcaatgcat cacgatggaa cgcgtggatg ccggcgaata
     5881 tgcgaactgg acgacccatc cgaacaatcc cgcacgcgtg gacgccgacg ttgaagaaag
     5941 cgtgaaggcc gcatagagtc tagaagccgt ataaaaagta gcgcgtgtca ctaacgtccc
     6001 ccgacgtccc ccgacggccg acgcccggac tggaatcaca gcctgatccg cgggcgcgga
     6061 ccgcaacgat cttgaggaga tcaacctgat gaagcagaca gcgcattctg tcgacccgca
     6121 gttcgcggcc ggcgccagca gcagtctata taacgacgat ctggcgccga ccacggccgc
     6181 gcaacggacg tggaagtggt atcactttgc cgcgctgtgg gtcggcatgg tgatgaatat
     6241 tgcgtcgtac atgctcgcgg ccgggctcac ggaggaaggc atgtcgccgt ggcaagcggt
     6301 gctgaccgtg ctgctcggca acatgatcgt gctcgtgccc atgctgctgg tcggtcacgc
     6361 gggcgcgaag catggcattc cgtatgccgt gctggtgcgc tcgtcgttcg gtacgaaagg
     6421 cgcgaggctg ccggcattgt tgcgcgcggt ggtggcgtgc ggatggtatg ggattcagac
     6481 gtggcttggc ggcagtgcga tctatacgtt gattaatatt ctcgccggga ataccacgca
     6541 cggtgcaccc ttgcccttcc tcgatatctc gctcgggcag ctcgcgtgtt tcctgttctt
     6601 ctggctgatc caggtctatt tcatcttgcg cggcaccgac tccatccgtt tccttgaaag
     6661 ctggtccgcg ccgatcaaga tcatcatgtg ccttg
//
LOCUS       DATGBK010000967         1635 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_11515, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000967 DATGBK010000000
VERSION     DATGBK010000967.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11515"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..555
                     /locus_tag="VKJ77_13460"
     CDS             <1..555
                     /locus_tag="VKJ77_13460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46324.1"
                     /translation="PLAQVELDRIHIRDGNLVTSAGVTAGIDVALSLVAEDHGSRIAL
                     AVAKRLVVFAQRRGGQSQFSPYLSAPADETSPAAKVQAYVMEHIGERMTVEKLAQIAG
                     MSERNFARGFVEATGVTPHDFVERARIDAARNALESSTTPFKTIAYECGFGTADRMRI
                     VFRQRLGVSPNDYRLSFQKLGADA"
     gene            558..851
                     /locus_tag="VKJ77_13465"
     CDS             558..851
                     /locus_tag="VKJ77_13465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46325.1"
                     /translation="MVDGLSLWFGARTVVTRLAMMGYGDVKTRVIKRVGVLRFCLPYA
                     GPLHAHGRWERPSFLFENVSLIVPKSSPVQDVALEMHSPGSMLADMYDMADDE"
     gene            899..1336
                     /locus_tag="VKJ77_13470"
     CDS             899..1336
                     /locus_tag="VKJ77_13470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46326.1"
                     /translation="MKDAYERRALLLHLGDVLEALSCLSRSGQRYATLGDAIAREDSL
                     TSFTWLGYLDAAMTPQQVNERATAAFFLWPKTLLDEDLNRSLLASTVQHDLFAGNAKG
                     WERYVAEHRKDVAWFAEGLQVRSDETKPESRFSRWPYPTETGS"
     gene            complement(1387..>1635)
                     /locus_tag="VKJ77_13475"
     CDS             complement(1387..>1635)
                     /locus_tag="VKJ77_13475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017453557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC46327.1"
                     /translation="SALDPELVGEVLQVMQALASEGMTMLIVTHEMNFARDVADTVVV
                     MDHGSVIEAGPPAQIFGAPREARTRSFLQAVLSREQAA"
BASE COUNT          305 a          459 c          524 g          347 t
ORIGIN      
        1 cccttggccc aggtcgagct cgaccgtatt catattcgcg acggcaacct ggtgacatcg
       61 gcgggcgtga cggcggggat tgacgtcgcc ctctcgctcg tcgctgagga tcatgggtcg
      121 cgtattgcac tcgcagttgc caagcgtctg gtggtttttg cacagcgccg cggcggccag
      181 tcgcaattca gcccctacct gagtgcgcct gccgacgaga cgtcgcccgc agccaaggtg
      241 caggcctacg tgatggagca tattggcgaa cgcatgacgg ttgaaaagct ggcgcagatc
      301 gcgggcatga gcgagcgcaa ttttgcgcgc gggttcgtcg aggcgaccgg cgtgacaccg
      361 catgatttcg tcgagcgtgc gcgtatcgat gcagcgcgaa acgcgttgga aagcagcacg
      421 acgccgttca aaacaatcgc gtatgagtgc ggtttcggca ccgcggaccg tatgcgaatt
      481 gtgttccggc aacgcctggg ggtgtcgccg aatgattacc gtctgagttt tcagaagctc
      541 ggggcggacg cttgacgatg gtcgatgggc tgagcctgtg gtttggtgca cgaacggtcg
      601 tgacgcgctt ggcgatgatg ggatacggcg acgtcaaaac ccgggtgata aagcgcgtgg
      661 gcgttttgcg tttctgcttg ccgtatgctg gaccgcttca tgctcacgga agatgggagc
      721 ggccatcttt tcttttcgag aatgtttccc tcatcgtgcc gaagtcgtcg ccagttcagg
      781 atgtggcgct cgaaatgcac tcgcccggtt ccatgctcgc ggacatgtat gacatggccg
      841 atgatgaata aggcggctta gccgctagca gcctgaatca atgaatctgg agatttgaat
      901 gaaagatgct tatgaacgac gtgcgctgtt gctgcatctg ggcgatgtgc tggaggcact
      961 gtcgtgcttg tcgcgtagcg gtcagcgcta cgccacgctc ggtgacgcaa ttgcccgtga
     1021 ggactcgctt actagcttta catggctcgg atatctcgat gccgccatga ccccgcaaca
     1081 ggtgaacgag cgcgcgaccg ctgcgttttt cctttggccg aaaaccctgc tcgatgaaga
     1141 tctgaaccgg tcattgctag cgtcgacggt gcagcatgac ctcttcgctg gcaacgccaa
     1201 ggggtgggag cgctacgtag cggagcacag aaaggacgtg gcatggtttg cggaaggttt
     1261 gcaggtacgg tcagacgaaa ccaagccgga atcgcgtttt agccgctggc cttatccgac
     1321 agagactggg tcctgagggg ccatcgccgc cagagtcctc gcactgcgcg gcgtgtggtg
     1381 tcgacgtcat gccgcctgtt cgcgcgacaa gacggcttgc aggaagctgc gtgtgcgggc
     1441 ttcacgcggc gctccgaaaa tctgtgccgg cggtcctgcc tcgatcacgc tgccatggtc
     1501 catcaccacg accgtgtccg ccacgtcgcg tgcaaaattc atctcatgcg tgacgatcag
     1561 catggtcata ccttcgctcg ccagcgcctg catgacctgc agcacttcac cgaccagttc
     1621 gggatcgagc gcgga
//
LOCUS       DATGBK010000968         1614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_335395, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000968 DATGBK010000000
VERSION     DATGBK010000968.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335395"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(131..1260)
                     /locus_tag="VKJ77_13480"
                     /pseudo
     CDS             complement(131..1260)
                     /locus_tag="VKJ77_13480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012406494.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            1506..>1614
                     /locus_tag="VKJ77_13485"
     CDS             1506..>1614
                     /locus_tag="VKJ77_13485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015004711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HMC46328.1"
                     /translation="MTTPSPGISPLRQRMMDDMRMRRLAPTTQANYLRVV"
BASE COUNT          291 a          524 c          471 g          328 t
ORIGIN      
        1 tgagcctgcc gctatctaaa gccgcaaatc ggatgggatc cgttgcatag tccaagcgcg
       61 ggttgctcgg gtgccgggct acgccgcctt caggaaactc ctcgcgtcag atgttcgaca
      121 gatacgcccg tcacgctgcc tgcgcttcgt acggcacgga gagcgacatc gcgagtcggc
      181 cgatgtccca gatgaatccc gccagctcgc gggcaacggc gaccaccgct atgttgacgt
      241 ttttgccgcg tgctgccagc ttgcgatatc gccggcatag tcgaacctgc gcgtcccagg
      301 cgcgatcaat gatgggcttc ggaatgcctt cgtgccgacg ctggatgtca gcactcacac
      361 gtgccgggta ccggtaactc caggccgcct cgaccagcag ctttcttgcg tagctgttgc
      421 cggtctttgt aatgctgccc tgacggcgcc ggtctcccga agaatgttct gatggtgtca
      481 cgccgagcca cgccatcagc tggcgcggat gttcgaagcg cgacaggtcg cccagttcgg
      541 agagcatgcc cacggcggtg atgaactgta tgccgcgcat cgcctgcggc ccagtatggc
      601 tggatagaac cgccagctga cgacggcttc atgcagcgtc gcttcaaggc ggtcacactg
      661 tgcgagcctg tcttcgatcg tgcgacggaa ctcgtcgaag gtcagttgct gccagtggtt
      721 gggaaatgca aatgtgctga cccaccgccg gtgcgcggcc ccccaatcgg cgtgacctgc
      781 atagcgaacg ccgtgcgcca gaaggaacga cttcagccgc tggcgcgcct gtctgagatc
      841 cattttcgct gctgcccatg cgcgggccag gtcccggaac gcctcgtctt caacatccgg
      901 tacgtgcact gctgacagat caccggcgcg cagcgcgcgt acgagcttga ccgcgtcgcg
      961 ccggtccgtc ttgacgcgct cgcccggctt cttcggaatc agggacggtg cgcataccat
     1021 gcattcaaat cctttctggg cgagatcgcg gtacagtccg tagcctgaag ggccggcctc
     1081 gtagacaaca tttacgtgtc gcgctttcga ctgcagacgt ttgcacaggt gatcgatatc
     1141 ggtcttcgtc gtaccgatct tacccagcaa ctccacctcg cccatgccga ccgcgtacgc
     1201 tgcggtgatc gactccttgt gaacatcaag accgacgtac accgtgctat cgtgttccat
     1261 gctggcctcc gcgctggaaa tcgccggggt gtgcccagtg cacatcgtgc ggctctggca
     1321 gcaatgctaa cccgcgtttg attcctcacg gcgggccagc gctgactcac ggaaagtcat
     1381 actgcctaaa ccgctcgcgc ggtatgcact gcgtttgaac gtggtggttc ttcataggaa
     1441 acccgctcgg tttcctatgt tgagcaatga ggcactccgc ctcgttactc gacaggagcc
     1501 cagccatgac tacccccagc ccaggtatca gtccgctacg ccagcgcatg atggacgaca
     1561 tgcgcatgcg ccgcctcgcg ccaaccacgc aagccaacta tcttcgtgtg gtac
//
LOCUS       DATGBK010000969         1603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_35354, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000969 DATGBK010000000
VERSION     DATGBK010000969.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35354"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /locus_tag="VKJ77_13490"
     CDS             complement(<1..764)
                     /locus_tag="VKJ77_13490"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010931057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HMC46329.1"
                     /translation="MPRHKNYLPRGVIPAALLPFHEDLSIDAVSFRSHLCDLASVKGI
                     SAITINAHASEVASCSFDEQKYVLDLTQDEIGARVPIVNGVYAEGSLEAVRIARMAHE
                     GGASALLVFPSGVYTFGQRPEMAVEHFKRIAEATDLPLIVFQYPLAGGQGYPLDTLLK
                     IVEAVPTIRAIKDWSANPQLHERQIRVLQSRTPPVAVLTTHSAWLLSSLVLGCHGLLS
                     GSGSVIADMQARLFRAVQANDLATARELNDRIWPTA"
     gene            1014..1166
                     /locus_tag="VKJ77_13495"
     CDS             1014..1166
                     /locus_tag="VKJ77_13495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003807750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HMC46330.1"
                     /translation="MIKRIFAPLLAALFFVGLFGTIAGCNTMAGAGQDIEQGGKAIKD
                     EAREKH"
     gene            1362..>1603
                     /locus_tag="VKJ77_13500"
     CDS             1362..>1603
                     /locus_tag="VKJ77_13500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46331.1"
                     /translation="MRAAPLAGTAPVPVAPGMDEVPEFIVPVDGMPVVPMEVSVDPAP
                     VLPIVPVGAVPVLPGLGWVVVPALVLPLPAVLLPGGR"
BASE COUNT          288 a          476 c          521 g          318 t
ORIGIN      
        1 tcggccgtcg gccagatgcg gtcgttcagt tcgcgtgcgg tggcgagatc gttagcctgc
       61 accgcgcgaa acagccgggc ctgcatgtcg gcaatgaccg agccgctgcc ggagagcagg
      121 ccatggcagc cgaggaccag cgaactcagg agccatgcgc tatgcgttgt cagaaccgca
      181 accggtggcg tgcgcgactg cagcacgcgg atctgccgct cgtgcaattg cgggttcgcg
      241 ctccagtcct tgatcgcccg tatcgtaggc accgcctcga cgattttgag cagagtgtca
      301 agcggatagc cctgaccacc ggcaagcgga tactgaaaca cgatgagcgg caggtcggtg
      361 gcctccgcga tccgcttgaa gtgctccacg gccatctccg ggcgctggcc aaaggtatag
      421 acgccggacg ggaatacgag cagggcggaa gcgccgcctt cgtgcgccat tcttgctatg
      481 cgcacggctt cgagactgcc ttcggcatag acaccgttga cgatagggac gcgggcgccg
      541 atttcgtcct gcgtgagatc gagcacgtat ttctgctcgt cgaagctgca tgaagccact
      601 tccgaagcgt gggcgttgat tgtgatcgcc gagatcccct tgaccgaggc caggtcgcac
      661 agatgcgagc gaaacgagac cgcatcgatc gacaggtctt cgtggaaggg cagcagcgcg
      721 gcaggaatga cgccccgagg cagatagttc ttgtgtcgtg gcatggttca ttataccgca
      781 cgcccgattc aactttatcc ggaagatcgt gttcttcgat ttcgattcgc gagtagtgcg
      841 cgccacggat ccgccgtcat gctggcgtga tatcgtttcg ctattttccc ggaagatagc
      901 cgccatgaac ggggtagatc tggcgaagtt cgcctgcgct agtatgtgcg gtgccgtaca
      961 gacacgccga tccatgctca ctatcgtcaa acttttatga caggagattc atcatgatca
     1021 aacgaatttt cgcgccgctg ctggcggcac tcttctttgt tggcttgttc gggacgattg
     1081 ccggttgcaa caccatggcg ggcgcaggcc aagacatcga gcagggcggc aaagcgatca
     1141 aggacgaggc gcgcgagaaa cactaagatc cgagtgcggg aagaccaccc ggtctacgta
     1201 ctcgacacgc tctgacttgc agagtcccct gcgggggcaa ctccgggcac ttctgaaaag
     1261 tggcggtgcc gctcgcgtga tggcgcgccc ggtgggataa atctgcactg gcgcgaggtg
     1321 ctattcgtcc aataacgtcc gagccctacc ggcgcgcggg cgtgcgtgcc gcgccgcttg
     1381 ccggtacagc cccggtgccc gttgcgcccg gaatggacga ggtacccgag ttcatcgtgc
     1441 cggttgatgg catgccggtg gtgcccatgg aggtctcggt ggatcccgca cccgtattgc
     1501 ccatagtgcc ggtcggcgct gtgccggtac tgcccgggct tggctgggtg gttgttcccg
     1561 cgctcgtgtt gccgcttccc gccgtgctat tgcccggcgg gcg
//
LOCUS       DATGBK010000970         1575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127179, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000970 DATGBK010000000
VERSION     DATGBK010000970.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127179"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..>1575)
                     /gene="dnaA"
                     /locus_tag="VKJ77_13505"
     CDS             complement(152..>1575)
                     /gene="dnaA"
                     /locus_tag="VKJ77_13505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013586763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HMC46332.1"
                     /translation="IADMARDFWHAPVDIQFVLDPKATARKAMGGAPTPSAQSASSAP
                     TGAAASPSMQRPGAQTTERSNGGHANASAHINALAAEAAQNAQSQQHNDQGDNGDLDL
                     PSLDANEAAAARRTWRPGSTASSNGENDTAYERSKLNPVLTFDNFVTGKANQLARAAA
                     IQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLQDKAGARIRYIHAEQYVSDVVK
                     AYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDT
                     YPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKH
                     LRSNVRELEGALRKILAFSRFHGREISIELTKEALKDLLTVQNRQISVENIQKTAADF
                     YNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKI
                     SAERGTDAQLNHELHVLEQTLKG"
BASE COUNT          263 a          481 c          480 g          351 t
ORIGIN      
        1 aagcgttttt cactgccggc atgactaccc gctggttcgg tgtcggttcg gggccgttca
       61 tcgtcggcag cccggtacag ctgccgtttt cctgccttcc cagcatcttt cgcatcgcgc
      121 gatgtgcacc gcgcgttgcc gcgcagaacg ctcaaccttt cagcgtttgc tcgagcacgt
      181 gaagctcgtg gttcaactgg gcgtcggtgc cgcgttccgc cgagattttc cgcacggcgt
      241 gcagcaccgt ggtgtggtcg cggccgccga acagttcgcc gatttccggc agacttttct
      301 gcgtgagttc cttcgccagg tacatggcga tctgacgcgg ccgcgcgatg ttcgccggcc
      361 gcttcttgga atacatgtcg gcgaccttga tgttgtagaa gtccgccgct gtcttctgga
      421 tgttttccac cgatatctgc cggttctgca ccgtcagcag gtctttcagc gcttccttgg
      481 tcagctcgat cgagatctcg cggccgtgaa accgggagaa cgccaggatc ttgcgcaacg
      541 cgccttcgag ttcacgcacg ttcgagcgca aatgctttgc gacgaaaaat gccacatcct
      601 ccgacaaact cacgccttcc gactgcgcct tgcgcatcag gatggccacg cgcatttcaa
      661 gctccggcgg ttcgatcgcg accgtcaggc cggagtcgaa gcgtgaaatc agccggtcat
      721 cgatacccga aatctccttc ggatacgtat cgcttgtgat gatcacctgc gccttgttcg
      781 ctaccagcgc ctcgaacgcg tagaaaaact cttcctgcgt ccgcgatttg cccgagaaga
      841 attgaatatc gtcgatcagc agcaggtcga gcgaatggta ataacgcttg aagtcgtcga
      901 aagccttgcg ctggtacgcc ttcaccacgt ccgacacgta ttgctccgca tggatgtagc
      961 ggatgcgcgc gccagccttg tcctgcaaca actgattgcc aattgcatga atcaggtggg
     1021 tcttgcccag acccacgccg ccgtacagga acagcgggtt gtacgaaatg ccggggttat
     1081 cggcgacctg gatcgcggct gcccgggcga gctgattcgc cttgccggtc acgaagttat
     1141 cgaaggtgag gacgggattg agcttcgaac gctcgtaagc cgtatcgttt tccccatttg
     1201 acgacgccgt gctgcccggt cgccatgtcc ggcgcgccgc ggcagcttcg ttcgcgtcga
     1261 ggctcggcag gtcgagatcg ccgttgtcgc cctgatcgtt gtgttgctgg gactgcgcgt
     1321 tctgcgcggc ttcggccgcg agcgcgttga tgtgggcgct tgcgttcgcg tgaccgccat
     1381 tgcttctttc agtagtctgg gcccccggtc gctgcatgga cggggaagcc gccgcgccag
     1441 tgggcgccga cgaagcggac tgagcggagg gtgtgggcgc gccgcccatc gccttgcgag
     1501 cggtggcttt tgggtccaga acaaactgga tatcgacggg tgcgtgccag aaatcccggg
     1561 ccatatcagc gatac
//
LOCUS       DATGBK010000971         2529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_35374, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000971 DATGBK010000000
VERSION     DATGBK010000971.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35374"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..818
                     /locus_tag="VKJ77_13510"
     CDS             <1..818
                     /locus_tag="VKJ77_13510"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HMC46333.1"
                     /translation="ARMHAAYYRPGGVYRDLPDAMPQYKASKIRNAKALSRMNETRQG
                     SLLDFIDDFFTRFPKCVDEYETLLTDNRIWKQRLVGIGVVSPERALQLGMTGAMLRGS
                     GIEWDLRKKQPYEVYDQLDFDIPVGVNGDCYDRYLVRVEEMRQSTRIAKQCIDWLRKN
                     PGPVMVDNHKIAPPSRVGMKTNMEELIHHFKLFTEGFHVPEGETYAAIEHPKGEFGIY
                     LISDGANKPYRLKIRAPGYAHLASLDEMARGHMIADAVTIIGTQDIVFGEIDR"
     gene            977..1462
                     /gene="nuoE"
                     /locus_tag="VKJ77_13515"
     CDS             977..1462
                     /gene="nuoE"
                     /locus_tag="VKJ77_13515"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HMC46334.1"
                     /translation="MISAEGLKEIDRAIAKYPVDQKQSAVMSALTVAQEEHGWLSPEL
                     MQFVADYLSMPAVAVQEVATFYTMYDTAPVGKHKITLCTNLPCQLGPDGGSESAAEYL
                     KQKLGIDFGETTADGKFTLKEGECFGACGDAPVLLVNNHRMCSFMSRERIDTLLEELS
                     K"
     gene            1459..>2529
                     /gene="nuoF"
                     /locus_tag="VKJ77_13520"
     CDS             1459..>2529
                     /gene="nuoF"
                     /locus_tag="VKJ77_13520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014896505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HMC46335.1"
                     /translation="MTSLHDRHIQPLILAGLNGDNWHLEDYVARGGYAQLRRILEEKI
                     PQEQVIADVKASGLRGRGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDI
                     LRWNPHALIEGMAIGAYAMGITVGYNYIHGEIFEVYRIFEQALEEARAAGYLGANILG
                     SGFSFELHAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGVYGKPTTINNTE
                     TFAAVPFLLAIGPQKYLEIGKPNNGGTKIFSVAGDVNRPGNFEVPLGTSFETLLELAG
                     GVRGKSVKAVIPGGSSAPVIPGDIMLKTDMDYDAIAKAGSMLGSGAVIVMNETRCMVR
                     SLLRLSYFYYEESCGQCTPCREG"
BASE COUNT          541 a          714 c          774 g          500 t
ORIGIN      
        1 gcgcgcggat gcacgcggcg tattaccgtc caggcggcgt gtatcgcgat ctgcctgacg
       61 ctatgccgca atataaagcg tcgaaaatcc gcaatgcgaa ggcgttgtct cgcatgaacg
      121 aaacgcgtca gggttcgttg ctcgatttca tcgacgactt ctttacgcgc tttccgaaat
      181 gtgtcgatga gtacgagacg ctgctgaccg ataaccgtat ctggaagcag cggctggtgg
      241 gtatcggcgt ggtcagtcct gagcgcgcgt tgcagctcgg catgaccggt gcgatgctgc
      301 gcggctcggg cattgaatgg gatttgcgca agaagcagcc gtacgaagtc tacgatcagc
      361 tcgactttga tattccggtc ggcgtgaacg gcgactgcta cgaccgttat ctcgtgcgcg
      421 tggaagaaat gcgtcagtcc acccgcatcg cgaaacaatg tattgactgg cttcgcaaga
      481 atccaggccc ggtgatggtc gacaatcaca agattgcgcc gccgtcgcgc gtcggcatga
      541 agaccaacat ggaagagctg attcaccatt tcaagctctt cacggaaggt ttccacgttc
      601 ccgaaggcga gacctacgcg gcaatcgagc atccgaaggg cgagttcggc atctatctga
      661 tttcggatgg cgcgaacaag ccgtatcgac tgaagattcg tgctccgggt tatgcgcatc
      721 ttgcttcact cgacgaaatg gctcgcggtc acatgattgc ggacgcggtg acaatcatcg
      781 gcacgcagga catcgtgttc ggtgagattg atcgctgaca tgcagacgtc aggaaactgc
      841 gccgcaccac gccggcatgc gcgcgcaata gcgctgagcc tgccggcgaa ccaacaacag
      901 caggacgcca ggtctgccgc aaaagaaggg cgcggcgggt tttcgttcgg taggaactga
      961 aagagtcgtg tctgaaatga tctcagctga aggcctgaaa gaaatcgatc gcgcgatcgc
     1021 gaaatatccc gtggaccaga aacagtccgc ggtgatgtcg gcgttgaccg tcgctcagga
     1081 agagcacggc tggctatcgc cggaattgat gcagttcgtc gccgattacc tcagcatgcc
     1141 cgctgtggca gtgcaggaag tggcgacgtt ctacaccatg tacgacaccg cgccggtcgg
     1201 caaacacaag atcacgctct gtacgaacct gccgtgccaa ctcgggccgg acggcggctc
     1261 ggaaagcgct gccgaatacc tgaagcaaaa gctcggcatc gactttggcg aaaccaccgc
     1321 cgacggcaaa ttcaccttga aagaaggcga atgtttcggc gcgtgcggcg atgcacctgt
     1381 gttgctcgtg aacaatcacc gtatgtgcag tttcatgagt cgcgagcgaa tcgacacgct
     1441 cctcgaggaa ctatcgaaat gacgtctctt cacgaccgcc acatccagcc cctgattctc
     1501 gccggcctca acggcgacaa ctggcatctc gaagattatg tggcgcgcgg cggttacgcc
     1561 cagctgcgcc gcattctcga agaaaaaatc ccgcaagagc aggtgattgc cgacgtcaag
     1621 gcgtcgggct tgcgcggccg cggcggtgcg ggtttcccga ccggcctcaa gtggagcttc
     1681 atgccgcgtc agtttccggg gcagaagtac ctcgtctgca attcggacga aggcgaaccg
     1741 ggcacgttta aagaccgcga catcctgcgc tggaatccgc atgcgctgat cgaaggcatg
     1801 gccatcggcg cgtacgccat gggcatcacg gtcggctaca actatattca cggcgagatt
     1861 ttcgaggtct atcggatctt cgaacaggcg cttgaagaag cgcgtgcggc cggttacctc
     1921 ggtgcgaaca tcctgggttc gggcttctcg ttcgaactgc atgcgcatca tggttacggc
     1981 gcgtatatct gcggcgaaga aactgcgttg ctcgagtcgc tggaaggcaa gaaaggccag
     2041 ccgcgcttca agccgccgtt cccggcgagc tttggcgtgt acggcaagcc gaccacgatc
     2101 aacaacacag agacgttcgc agccgtgccg ttcctgctgg ctattggccc gcagaagtat
     2161 ctcgagatcg gcaagccgaa caacggcggc acgaagatct tctcggtcgc cggcgacgtc
     2221 aatcgtccgg gtaacttcga agtgccgctg ggcacgtcgt tcgagacctt gcttgagttg
     2281 gccggtggcg tgcgcggcaa gtcggtgaaa gcggtgatcc ctggcggatc gtcggcaccg
     2341 gtgattccgg gcgacatcat gctgaagacc gacatggact atgacgccat cgcgaaagcc
     2401 ggatcaatgc tcggttcggg cgccgtgatc gtgatgaacg aaacgcgctg catggtgcgc
     2461 tcgctgctgc gtctttcgta cttctattac gaagagtcgt gtggtcaatg cacgccttgc
     2521 cgtgaaggt
//
LOCUS       DATGBK010000972         4418 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289605, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000972 DATGBK010000000
VERSION     DATGBK010000972.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4418
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289605"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..670
                     /locus_tag="VKJ77_13525"
     CDS             <1..670
                     /locus_tag="VKJ77_13525"
                     /EC_number="1.3.1.106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016994 - precorrin-6A reductase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cobalt-precorrin-6A reductase"
                     /protein_id="HMC46336.1"
                     /translation="AGLGRTPGDLACSVRVGGFGGVEGLKVFIEAESIGLIVDATHPY
                     AAQMSRHASAASAPKNIGCWALRRAPWQPQTGDDWREAEDFTEIVHALAPYKYPLWTL
                     GREPLAHLDEIPPSQHWTIRCLDPHPGNARATIIGARGPFSLDGERALFDAQQTDVLI
                     SKNSGGAATEAKLAVARERGLPVIMLQRPSLPPVEREFSDTSSLLEALEAWLHPHPLF
                     DKTP"
     gene            671..1399
                     /gene="cobM"
                     /locus_tag="VKJ77_13530"
     CDS             671..1399
                     /gene="cobM"
                     /locus_tag="VKJ77_13530"
                     /EC_number="2.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0046026 - precorrin-4
                     C11-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-4 C(11)-methyltransferase"
                     /protein_id="HMC46337.1"
                     /translation="MTVYFIGAGPGDPELITVKGQRLIRTCPVILYAGSLVPEAVLSG
                     HSAQSVVNTADLHLDEIVALLEAAHAKGQDIARVHSGVPSLYGAIGEQIRRLNTLAIP
                     YEIVPGVTAAAASAASLGCEFTLPGISQTVILTRFATKTSMPEGEQLADLARHRATMA
                     IHLGVRHIERIVVDLIPHYGAQCPVAVIFRASWPDEEKVLGTLADIAGKVLEKGIERT
                     ALIVVGYVLNAEGFTDSSLYRKPF"
     gene            1410..1805
                     /locus_tag="VKJ77_13535"
     CDS             1410..1805
                     /locus_tag="VKJ77_13535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4186 domain-containing protein"
                     /protein_id="HMC46338.1"
                     /translation="MRDLDTVFDALSHSNFRMRFRLGGREEAYLREHGMTEVIGHARE
                     LITRRLAPEQPPNDGKQTPFRGHPVFIAQHATATCCRSCLAKWHGIAAGKRLDDDERD
                     HVVQVIERWLKAQKVAGADKPPRQADLPF"
     gene            complement(1869..2612)
                     /locus_tag="VKJ77_13540"
     CDS             complement(1869..2612)
                     /locus_tag="VKJ77_13540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006407446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HMC46339.1"
                     /translation="MDYLVALASDPGAWAALATLLVMEVVLGIDNLIFISILTNKLPE
                     AHRARTQRLGIGLALVMRLGLLGTVALIVRLTAPIFTAFGHDFSWRDLILIAGGAFLV
                     WKATTEIHHHVSDEGGDGNGAVKTSTLTPWSAIGQILVLDLVFSIDSIVTAVGMTEHI
                     PIMFIAVVGAVTVMMFAAGPLSRFIERNPTVVMLALGFLLVIGMTLVAEGFGSHVPKG
                     YIYAAMAFSALVEGLNMLSRRAKKKRALE"
     gene            2912..4021
                     /gene="opgC"
                     /locus_tag="VKJ77_13545"
     CDS             2912..4021
                     /gene="opgC"
                     /locus_tag="VKJ77_13545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OpgC domain-containing protein"
                     /protein_id="HMC46340.1"
                     /translation="MQGKSQRLVELDFFRGLVLLVILVDHIGGSMISRVTLHSFALND
                     AAEVFVFLGGFATATAYMSMSGRRSESAARARFFRRAFEIYRAFLITAALMLLTSFLL
                     RPFFGSAPNLATSDLDAFLAAPFTALADLLLLRRQPYLSSVLPMYAFFALAVPLVLPL
                     ARTKPWLLLGASIALWAAATPVAEYLPSADDLLWDFNPAAWQLMFVMGVLACCQPIYQ
                     RVSSHRLGWLVSVAALAIVAGMAYYKLLVLPVSFDGDFKRNLAGARIVNFLGVAWLAG
                     DLVRHGVVKQIARRLPWVGAVGRDGLVCFVAGAVISLCVDSILFTLTGGLIDVPLGFA
                     ADAVALGLLLAIPHRQRMLDVIGLRPVAPVAKGEG"
BASE COUNT          855 a         1305 c         1317 g          941 t
ORIGIN      
        1 cgccgggttg ggccgcacac caggcgatct ggcctgcagc gtgcgcgtgg gcggcttcgg
       61 cggcgtagaa gggttaaagg tcttcattga agcagaatcc ataggcttga tcgtcgatgc
      121 cacgcaccct tacgccgcgc aaatgagccg tcacgcgagc gcggccagtg cgccgaagaa
      181 cattggctgc tgggcgcttc gccgcgcacc gtggcaaccg caaaccggag acgattggcg
      241 ggaggcagaa gattttacgg agatcgtcca cgccctcgcg ccttacaaat atccgctctg
      301 gacgctgggc cgcgaaccgc tggcgcatct tgatgagatt cctccttcgc aacactggac
      361 cattcgctgt ctcgacccgc atcccggcaa cgcacgggcg acaatcatcg gtgcgcgcgg
      421 accgttttcg ctcgatggtg aacgcgcgct cttcgacgcg cagcaaaccg atgtcctcat
      481 cagcaagaac agcggcggcg cggcaaccga ggcgaaactg gcggtagcgc gggaacgcgg
      541 cttgcccgtg atcatgctgc agcggccgag cctacccccg gtcgagcgcg aattttccga
      601 tacaagctcg cttctggaag cacttgaagc atggctccat ccgcatccac ttttcgataa
      661 aaccccttaa atgacggtct atttcattgg cgccggaccc ggagatcccg aactcatcac
      721 ggtgaagggg caacgcctca ttcgcacgtg cccggtgatc ttgtatgccg gatcgctcgt
      781 gccggaagcc gtgttgagcg ggcatagtgc ccaaagcgtg gtgaatacag ccgatcttca
      841 cctcgacgaa attgtcgcgt tgctcgaagc ggcgcacgct aaagggcagg acatcgcgcg
      901 agtgcattcc ggcgttccgt ctttatacgg tgcaatcggc gaacagatca ggcgtctgaa
      961 tacgcttgcg atcccgtatg aaatcgtacc cggcgtcacg gcggcagccg catcggcggc
     1021 atcccttggt tgcgaattca cgttgccggg catctcgcag acggtgatcc tcacgcgctt
     1081 cgccacgaag acatcgatgc ccgaaggcga gcaactcgcc gatctcgcac gccatcgcgc
     1141 gaccatggcg atccaccttg gcgtgcgtca tattgaacgg atagtagttg atctgattcc
     1201 gcattacggc gcgcagtgtc ccgtagccgt gatcttccgt gcaagctggc ccgacgaaga
     1261 gaaggtgctc ggcacgctcg ccgatatcgc cggaaaagtg cttgaaaaag gcattgaaag
     1321 gacagcgttg atcgtggttg gatatgtgct gaatgcggaa ggttttacgg attcgtcgct
     1381 gtatcgcaag ccattctgag ccacatccca tgcgcgatct cgacaccgtc ttcgatgcct
     1441 tgtcgcattc gaattttcga atgcgtttcc ggcttggcgg ccgcgaagaa gcgtatctgc
     1501 gtgagcacgg catgacggaa gtgatcggcc acgcgcgtga actgattacg cggcggctcg
     1561 cacccgagca accgccgaac gatggcaagc agacgccgtt tcgaggccac ccggtattta
     1621 tcgcacagca cgccacggcg acgtgctgcc ggagttgcct cgccaagtgg catggcatag
     1681 cagcggggaa acgactggac gatgacgaac gggaccacgt cgtgcaggtt atcgaacgct
     1741 ggctgaaggc gcaaaaagtg gccggcgctg ataaaccgcc acgtcaggcc gacttgccgt
     1801 tctgataatg caacgaagac cccgccgcgc ggctcagcac cgcgcggcgt tttcggttta
     1861 tcgcgccatc attctaaagc gcgtttcttc ttcgctcttc gcgacaacat attcagcccc
     1921 tcgaccagcg ctgagaacgc catcgctgcg taaatgtagc cctttggaac atgcgagccg
     1981 aacccttcgg cgaccagcgt catcccgatc acgagcagga agccgagcgc gagcatcacg
     2041 acagtcgggt tcctttcgat gaaacgcgac agcggtcccg ctgcgaacat catcaccgta
     2101 acggccccga ccaccgcgat gaacatgatg ggaatgtgct ctgtcatgcc aactgcagtc
     2161 acgatgctgt cgatggaaaa cacgagatcc agcaccagga tctggccgat cgccgaccac
     2221 ggcgtgagcg tggaggtctt cacggcaccg ttgccatcgc caccttcatc cgagacgtga
     2281 tgatggatct cggtggtcgc tttccacacg aggaacgcac cgccggcaat gaggatcagg
     2341 tcgcgccaag agaagtcgtg tccgaaggcg gtgaagatcg gggcggtcag gcgcacgatc
     2401 agcgcgaccg tgccgagcag gccaagccgc atcaccagcg ccagcccgat gccgagccgc
     2461 tgcgtgcgcg cgcgatgcgc ctcgggcagt ttgttcgtaa gaatggagat gaagatcagg
     2521 ttgtcgatgc cgagcacgac ttccatgaca agcagcgtcg ccagtgcggc ccacgcgccg
     2581 gggtcgcttg ccaatgcaac taaatagtcc atgagatccg agggtcttgg agaagtagga
     2641 ggaaacgggt aaggccccta cgcggcggcc gttcgcgatg atacgtgacg catcaagtaa
     2701 aaatgaaagc ttaatgaaat aattgagagc gatgcagagc caaaaagttc gcccggcgtc
     2761 atgttgaggt caaaatgcgt atcaaaatgg tgcatcgcgc aaatacgggt aaactctgac
     2821 tttggtcgcc cttactctga ccggaacggc ttccggttcc ggcgccttca accttcgctg
     2881 cccgattccg gcagttcttt cgggttttcg catgcaggga aaatcgcaac gcctggtcga
     2941 actggacttt tttcgtggcc tcgtgctgct ggtgattctg gtcgatcata ttggcggcag
     3001 catgatatcg cgtgtgacgc ttcactcgtt cgcgctcaac gacgccgccg aagtcttcgt
     3061 gttcctcggc gggtttgcca ccgcgaccgc ctatatgtca atgtcgggcc gccgctcgga
     3121 atcggctgcg cgggcacggt ttttccggcg cgcattcgaa atctatcgcg cgtttctcat
     3181 caccgctgcc ctgatgctgc tgacgagttt cttgttgcgg ccgtttttcg gcagcgcgcc
     3241 gaatcttgcc acttccgacc tggatgcctt tctcgccgcg cctttcaccg cgctggccga
     3301 cttgctgctt ttgcgccgtc agccgtatct gtcttccgtc ctgcccatgt atgcgttttt
     3361 tgcgttggcc gtgccgcttg tgttgccgtt ggcgcgcacc aagccgtggc tgttgctcgg
     3421 tgcaagcatc gcgttgtggg cagcggcgac tcccgtggcc gagtatttgc cgtcggcgga
     3481 tgacttgctg tgggatttca atccagccgc gtggcagttg atgttcgtga tgggtgtgct
     3541 tgcatgctgc cagccgattt atcagcgcgt gagttcgcac cggctcggtt ggttggtgag
     3601 cgttgccgcg ctcgcgattg ttgcaggcat ggcgtactac aaattgctcg tgcttccggt
     3661 ttccttcgat ggcgatttca agcgcaacct ggccggcgcg agaattgtca atttcttggg
     3721 cgttgcgtgg cttgcgggcg atctggtacg tcacggagtg gtgaagcaga tcgcgcggcg
     3781 cttgccgtgg gtcggcgcgg tcggccgtga tggactggtg tgcttcgtag cgggcgcggt
     3841 gatctcgttg tgcgtggatt cgatattgtt cacgctcact ggcggactga tcgatgtccc
     3901 gctgggtttc gccgccgacg ccgttgcgct gggtctgttg ctggcgattc cgcatcgcca
     3961 gcggatgctt gatgtgattg gtttaagacc ggttgcgccg gtcgcgaagg gagaagggta
     4021 agggcgcttg gttcgatgaa cggcggccga catcgttctt tcgtcaagta agaaagtgcg
     4081 acgaagacta acgatctacg ccgcatagca tctgcttgct gagaggcaca tcattgcaag
     4141 atccaagcgg ttcctcataa ccgcgccgtt ccgcgcgcaa gccactgctc ccgaaaaccc
     4201 tcacccatct gaatccatct aaaagcccaa aggcgtccgc atcgcggacg cctttgggct
     4261 tttaggcatt catgaccgcg atcacctcac ctcatcccac cccccaccat ttcactctta
     4321 aaaattctca gttttgtcct aattctttaa gagggttccg agggtcatct gaggcgctga
     4381 accttaatat tcattcactc gcagacgaac cggttcat
//
LOCUS       DATGBK010000973         2841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_150066, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000973 DATGBK010000000
VERSION     DATGBK010000973.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2841
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150066"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(102..938)
                     /locus_tag="VKJ77_13550"
     CDS             complement(102..938)
                     /locus_tag="VKJ77_13550"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HMC46341.1"
                     /translation="MSTSLNTARAVPVLMYHHVSPAAGAVTVSPVHFADQIAMLAREG
                     YTTLGAQAFSEYLAGKPVPAKSVVLTFDDGYLDNWVHAHPVLAEHGFTALGFLVSGWV
                     NSGPARSNATDSTSARNLPGLLGHSAAKAAIEAGESDRAIMRWSEIDAMRQAGTFEFH
                     SHTHTHTRWDRVSANPVTKRARLRDDLLQARAALVQHLGGVSDHLCWPQGYFDTDYVE
                     EAHAAGFRHLYTVEPGTNQRHGNPARILRLDVRDKPGTWLQSRLWVHSRPLLSRLYLT
                     IK"
     gene            complement(935..2032)
                     /locus_tag="VKJ77_13555"
     CDS             complement(935..2032)
                     /locus_tag="VKJ77_13555"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC46342.1"
                     /translation="MKPLRILHSESSNGWGGQEHRTFKEMLALRERGHTLELVCVPGA
                     RLGERLGAEGFTVHTTAMRSGADVSAVANMRHILKQGRFDVLNTHSGRDSLLGGAAAR
                     LSGTPLIVRTRHLALAITSRATYTWLPHKVVAVSQSVMRYLVSAGVPQKDIVTIYTGI
                     VKSQPVSRASSTLRAELGLGEDAVIAGTVAIMRDKKGHPDLIRVAKELIEQRPNLHFV
                     FAGDGPLFDEIRANVQAQGLGRHIHLLGLRRDIPNVLAGFDLFVLPTHQEALGTSFIE
                     AMAAGLPVIGTAVDGVPEVIDHGVNGLLVPAHDDRALAAALLRLADAPDERRRMGAAG
                     LRTTQTRFSVDTMASEMAAFYRSSLSERGAA"
     gene            2472..>2841
                     /locus_tag="VKJ77_13560"
     CDS             2472..>2841
                     /locus_tag="VKJ77_13560"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004538561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HMC46343.1"
                     /translation="MTRPTLGIALITFNAAARLAQCLEAVSFADEIVVIDGGSTDATV
                     GIAEAHRARVVEAPDWPGFGPQKNRALDALTTDWVLSIDADEVVSPDLGAAIRAALSK
                     PQADVYAVDRLSNFCGQWVRH"
BASE COUNT          516 a          906 c          891 g          528 t
ORIGIN      
        1 ggtaataagt actcaggaaa atgcttggaa tggtcatgac gagcgagccc gaaggcagct
       61 tccggcgggt cagcaaggaa cgggcaacag cccgcaggcc gtcatttgat tgtcaggtaa
      121 aggcggctga gaagcggccg gctatgcacc cacaggcggc tttgcaacca cgtgcccggc
      181 ttgtcgcgca catccagccg caagatgcgc gccggattgc cgtgacgctg gttggtgccg
      241 ggttcaacgg tgtacagatg gcgaaaaccc gccgcgtgcg cttcttccac gtagtcggta
      301 tcgaaatagc cttgcggcca gcacagatga tccgatacgc ctccaaggtg ctggacgagc
      361 gccgcccgtg cctggagcag atcgtcgcgc aggcgcgcgc gtttcgtgac tggattggcg
      421 ctcacacggt cccagcgcgt atgtgtatgt gtgtggctgt gaaactcgaa ggtcccggct
      481 tgacgcattg cgtcgatttc cgaccagcgc atgatggccc ggtcgctctc gccggcctcg
      541 atcgccgcct tcgctgctga gtgtcccagc aggcccggta agttcctggc ggacgtcgag
      601 tccgttgcgt tcgagcgcgc agggccgcta ttcacccagc ccgacacgag gaatccgagc
      661 gccgtaaaac cgtgttcggc gagcaccgga tgcgcgtgaa cccagttatc gagataaccg
      721 tcatcgaaag tgagcacgac cgatttcgcc ggcacaggct tgcccgccag atactcgctg
      781 aacgcctgcg cgccgagggt ggtgtaaccc tcccgcgcga gcatggctat ttgatccgcg
      841 aaatgcacgg gcgacaccgt caccgcgccg gccgccggac tcacgtggtg atacatcagc
      901 acaggcacgg cgcgcgccgt attcagcgac gtactcatgc agcgcctcgc tcgctcaagc
      961 tgcttcggta aaacgcggcc atctcgctag ccatggtatc gacggaaaag cgcgtctgcg
     1021 tggtccgcag accagccgcg cccatgcggc ggcgttcgtc gggagcatcg gccagacgca
     1081 gtagtgcagc ggcgagcgca cggtcgtcgt gcgcgggcac gagcaggccg ttgacaccgt
     1141 gatcgatcac ttccggcacg ccgtccaccg ccgtcccgat caccggaagg cctgctgcca
     1201 tggcctcgat gaacgacgtg cccagcgcct cctgatgcgt cggcagcacg aacaggtcga
     1261 agcccgccaa tacgttcggg atatcgcggc gcaggccgag taaatggatg tggcggccaa
     1321 gaccttgcgc ctgcacgttc gcgcggattt cgtcgaagag cggaccgtcg ccggcgaaga
     1381 caaaatgcag gttcggccgc tgttcgatca actctttcgc aacacggatc aggtcgggat
     1441 gccccttctt gtcgcgcatg atcgcaaccg tgcccgcgat cacggcgtcc tcgccaagac
     1501 ccagttccgc gcgcaacgtg gagctcgcgc ggctcaccgg ctgcgatttg acgatgcccg
     1561 tatagattgt gacgatatcc ttctgcggca cgcccgcgga caccaggtag cgcatcaccg
     1621 actggctcac cgccaccacc ttgtgaggca gccaggtgta ggtcgcccgc gacgtgatgg
     1681 cgagcgccag gtgccgggtc cgcacgatca acggcgtgcc cgagagccgc gccgcggcgc
     1741 cgccgagcag gctgtcgcga ccactgtggg tatttagcac atcgaagcgg ccttgcttga
     1801 gaatgtgccg catgttcgca accgcgctga cgtcggcgcc tgaacgcatg gccgtggtgt
     1861 ggaccgtaaa accttccgcc ccaagccgct cgccgagccg cgcacccggc acacacacaa
     1921 gctcgagcgt atgaccgcgt tcgcgcagcg cgagcatttc cttgaacgtc cgatgttcct
     1981 gaccgcccca cccgttggac gattcgctgt gcagaattct cagcggtttc attactatgg
     2041 cgaactccga gtgaatcttg atagtctcaa ggtgaatggc gccgaacgct ggattccggg
     2101 ttgcggaccc tgcgtttcgt gtgtctctgg cgctgtgcta gtgcgctgaa tctcgcgcgc
     2161 caagctgctg gcgtttgcgt gctcgcgttt gcgtcttttc gggcagcgca ttcgggctca
     2221 tggctgtccg cggttttagg cccgtgaccc tgccgaccgg ggcatgtggc tattggtctg
     2281 gtataacggt ggccgggcgg cctggattga tgcgggacgc gtatggcgtg aattcacccg
     2341 gcctcgccaa gctccgcacg ccctgttagg gacgaaacat tgcaacgaga cagcgactat
     2401 aaacgcagca ttcaccgctg aaacttttcg catcaaatta tagcaattcg cataccccac
     2461 gcttaagccc catgactcgt ccaacgctcg gtattgccct cattactttc aatgcagccg
     2521 cacgcctcgc gcagtgtctg gaagcggttt ccttcgccga tgaaatcgtc gtgatcgacg
     2581 gcggcagtac cgatgcaacc gtcggcatag cggaggcgca tcgcgcgcgc gtggtcgagg
     2641 cgcccgactg gcctggcttc gggccgcaga aaaatcgtgc actcgatgcg ctcacgaccg
     2701 actgggtgtt gtccatcgac gcggacgaag tggtgtcgcc ggatctgggc gccgcgatcc
     2761 gtgcggccct ctcgaagccg caagccgacg tctacgcggt agacaggctg tcgaactttt
     2821 gcgggcaatg ggtgcggcac a
//
LOCUS       DATGBK010000974         1997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_58177, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000974 DATGBK010000000
VERSION     DATGBK010000974.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58177"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(212..844)
                     /locus_tag="VKJ77_13565"
     CDS             complement(212..844)
                     /locus_tag="VKJ77_13565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC46344.1"
                     /translation="MNQPKIKRDPEGTRRRILLAAAEEFAAGGLFGARVDQIARRAET
                     NERMLYYYFGSKEQLFTAVLEHAFAALTDAEKTLDLDGVAPVEAVTQLAHFIWNYYRE
                     HPELLRLINNENLHEARYIKGSTRIRELISPVVATLAKILERGQHAGLFRNNVDPLRF
                     YVTLSGLGYYIVSNRFTLEATFGLDFSRDAERDEIIKMNTELLLAYLLRR"
     gene            1323..>1997
                     /gene="rsxB"
                     /locus_tag="VKJ77_13570"
     CDS             1323..>1997
                     /gene="rsxB"
                     /locus_tag="VKJ77_13570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HMC46345.1"
                     /translation="MTAISPKTLADQIEDLLPQTQCTKCGYPACRPYAEAIAAGEANY
                     NQCPPGGQEGVVRLASLLGMPVIALNPDNGVERSRPLAIIDENLCIGCTLCLQACPVD
                     AIIGAAKQMHTIIPELCTGCDLCVPPCPVDCIAMVPVTGEKTGWDAWSPQEADAARER
                     HDWRLARLARERDAAEARKAARMVGSSRTEPGTESRTQPSTEPDGSVESKTAQPATTA
                     DDDAQAK"
BASE COUNT          432 a          583 c          597 g          385 t
ORIGIN      
        1 acgccgctgg cgcacgatgg tgtatccgca actgcgcgag ttcattctca cgcacgacaa
       61 ggcgccgaag aaggaagctg tcccggcttg atcgccgact gacggaatag cgggcctgaa
      121 attaattggc acgacaaaac acgccgcgat tacgcggcgt gtttcatttg cggcccctct
      181 gtggcgagaa ggccgcaagc aagccaagcc gtcagcgccg caacaaatac gcgagcagca
      241 attccgtgtt catcttgatg atttcatcgc gttcggcgtc gcggctgaag tcgagtccga
      301 acgtggcttc gagcgtgaat cggttcgata cgatgtaata gccgagaccc gacaaggtca
      361 cgtaaaagcg cagcgggtca acgttattgc ggaataatcc cgcgtgctga ccacgttcga
      421 gaatcttcgc gagcgtggcg accaccggcg atatcaactc tcgaatgcgc gtggaaccct
      481 ttatatagcg ggcttcgtgc agattttcgt tattgatgag ccgcaagagt tcgggatgct
      541 cacgataata attccagatg aaatgcgcca gttgcgtgac ggcctcgacg ggcgcaacgc
      601 catcaagatc cagcgtcttt tcagcgtcgg tgagtgcagc gaatgcatgt tcgagcacag
      661 ccgtgaacaa ctgctccttg ctgccgaaat aatagtagag cattcgctcg ttggtttcgg
      721 cacggcgtgc aatctggtca acacgcgcgc cgaacaagcc gcccgcagca aattcctctg
      781 cggcggcgag caggatgcga cggcgtgtac cctcaggatc tcttttgatt tttggctggt
      841 tcatggtggc tttgtgatcg acaaaccgcg ttatcgggca gcgtcacgcg ttcccgtgtc
      901 ctcaggaagc atgcgatgga tcggttacgc caacgtgatt gggggatacc gtcctgcagt
      961 caatcgaaag cgatttgatt atgtgcacat cgttggcatg ttggcaattg ggaatgattg
     1021 ggaacagctt gaaattcggc gataatgccg cttcccgtac aacggtcgga aacgctcgaa
     1081 caggacgtca agaatgagcg cgaaccagag cggtcgacat gtccccacat gccgtcaccg
     1141 aatgtcgccg aatgcggatc atgcggatcg cgctaatggc caattgtctg ttgtgtctgc
     1201 cctccaagcc cggccaacga cagatgagcg gaccgttcgt gttgcgaacg acttcgcgcc
     1261 aaggtcacga gcccgtccgc ccgccctccc cacgctgtta gcaagccgtt aatgtgactg
     1321 tagtgactgc aatctctccc aagactctcg ccgaccagat cgaagacctg ctgccccaga
     1381 cgcaatgcac caaatgcggc tatcccgctt gccggccgta tgccgaggcc attgcggcag
     1441 gcgaggcaaa ctacaaccag tgcccgccgg gaggccagga aggtgtagtc cgcctggcca
     1501 gcctgctcgg catgcctgtc attgcgctca atccggataa cggcgtggag cggtcacggc
     1561 cgcttgcgat catcgatgag aatctttgca tcggatgcac gctatgtctg caggcatgtc
     1621 cagtggatgc aatcatcggt gctgcgaagc agatgcacac gatcatccca gagctctgca
     1681 ccggctgcga cctgtgcgtg ccgccctgcc cggttgattg catcgccatg gttccggtca
     1741 cgggcgagaa gaccggctgg gacgcatgga gcccgcagga agccgacgcg gcgcgcgagc
     1801 ggcacgattg gcgcctggca cgcctcgcac gtgaacgcga cgcagccgaa gcgcgcaagg
     1861 cggcacgcat ggtcgggtcg tcgcgtactg aaccgggtac tgagtcgcgc actcaaccga
     1921 gtactgagcc ggatggatcg gttgaatcaa agacggcgca gcccgccacc acggccgacg
     1981 acgacgcgca ggcaaaa
//
LOCUS       DATGBK010000975         1678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_173437, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000975 DATGBK010000000
VERSION     DATGBK010000975.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173437"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..276)
                     /locus_tag="VKJ77_13575"
     CDS             complement(67..276)
                     /locus_tag="VKJ77_13575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HMC46346.1"
                     /translation="MIGEIDIYGVFLPAVLVLMLVSYLFCLVITRVFARVGLYRFVWH
                     RSIFDLAIYVIVLGIVVIVSHRLLP"
     gene            complement(317..>1678)
                     /locus_tag="VKJ77_13580"
     CDS             complement(317..>1678)
                     /locus_tag="VKJ77_13580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HMC46347.1"
                     /translation="PSGLENLLADIVTWFDEPLSTRADAASAAQANNDPRADALRSRI
                     ASLQPDADTLRTWDGALLSNTLWRLKQLVDVWQDCRTLRVIITNEQGSWRPRYRHWRL
                     GGTQQYFDRGMLLFSAGSAVLAIFISSSLWIASGWNDGAGAVTLAAIACCFFAALDEP
                     APQVFAFFTYTCLAVVLAGLYLFVILPTVHDFPMLVIMFAVPFILIGTLIPRPQFNLA
                     TMLTAVNTATFISIQGTYDANFLTFMNSNLAGPAGLLFAFVWTRVTRPFGAELAAARL
                     IRSGWRDVALSASTQPVDDQKNHTARMIDRLMQVIPRLAASDDQRHPSIESFRDLRIA
                     FNSLDLRRLRRRLHDADLASVDRVLEGVRAYFQQCVERGVRQPVPTSLETAIDVALDR
                     ITRRGGAVHAEAAAVQAQPGQTAAVPGRQIRDALHALVGMRLSLFPDTLASALPPQPE
                     PAA"
BASE COUNT          360 a          504 c          560 g          254 t
ORIGIN      
        1 cgaacgcggc gatcgccacg acaacgagcg taaagaggat ctgtccaacg gagaaccagg
       61 tttttttcac ggtaatagcc gatgcgaaac aatgaccacg atgccgagca cgatcacgta
      121 gatcgcgagg tcgaaaatgg aacgatgcca gacgaaacgg tacaggccaa cgcgggcgaa
      181 cacccgcgta atgaccaggc agaacaggta cgaaaccagc atcagtacca gcacggcggg
      241 caggaacacg ccgtagatat cgatttcacc gatcatcgcg gggcgctttg gaaaaaggag
      301 tgggaggagc ggcgtgtcat gcagcaggct ccggttgggg cggcaatgcg gacgcgagcg
      361 tatccgggaa cagcgacaga cgcatgccca ccagcgcatg caacgcgtcg cgaatctggc
      421 ggccggggac ggcggccgtc tggcccggct gcgcttgcac ggcggccgct tccgcgtgca
      481 ccgcaccgcc gcgtcgtgtg atgcgatcca gcgctacatc gatcgctgtt tccaggctcg
      541 ttggcaccgg ctgacgcacg ccacgctcca cgcactgctg gaaatatgcg cgcacaccct
      601 ccagcacgcg atcgaccgag gcgagatcgg cgtcgtgcag acgtcgccgc agacgccgca
      661 gatcgagcga gttgaaggca atgcgcagat cgcgaaaact ttcgatagac ggatgacgct
      721 ggtcgtcgct ggcggcgaga cgcgggatga cctgcatgag acggtcaatc atgcgcgcgg
      781 tgtgattttt ctggtcatcg acgggctggg tcgatgcact cagcgccacg tcgcgccagc
      841 ccgaccggat caaccgggcc gcagccagtt ccgcgccgaa gggccgcgtc acgcgggtcc
      901 agacgaacgc gaataacaaa cccgccgggc cagccagatt gctgttcatg aaggtcagga
      961 agttcgcgtc gtaggttccc tggatgctga tgaacgtggc ggtgttcacg gccgtcagca
     1021 tggtcgcgag gttgaattgc gggcgcggga tcagcgtgcc gatcaggatg aaggggaccg
     1081 cgaacatgat cacgagcatg gggaagtcgt gcaccgtcgg caggatgacg aatagataca
     1141 ggccggccag caccacggca agacaggtgt aggtgaagaa cgcaaacacc tggggcgcgg
     1201 gttcatcgag ggcggcgaag aaacagcacg caatcgcggc caacgtgacc gcgcccgcgc
     1261 cgtcgttcca gccggacgca atccacaggc tcgacgaaat aaaaatggcc agcaccgcgg
     1321 accccgccga aaacagcagc atgccgcgat cgaagtactg ctgcgtgccg cccagccgcc
     1381 agtgccggta acggggccgc caactgcctt gttcgttcgt gatgatcacc cgcagcgtgc
     1441 ggcaatcctg ccagacatcg acgagttgtt tcaggcgcca cagcgtgttc gacagcagcg
     1501 cgccatccca ggtccgcagc gtgtccgcgt cgggttgcag gctcgcgatc cggctgcgca
     1561 gggcgtcggc cctggggtcg ttattggcct gcgcggctga ggctgcgtca gcgcgcgtgg
     1621 acagtggttc gtcgaaccat gtgacgatat cggcgagaag gttttccaag cctgatgg
//
LOCUS       DATGBK010000976         2935 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_104158, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000976 DATGBK010000000
VERSION     DATGBK010000976.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2935
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104158"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VKJ77_13585"
     CDS             complement(<1..705)
                     /locus_tag="VKJ77_13585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46348.1"
                     /translation="MSAIHPSTASDHVAALYNKLNWRLLPFLVTCYMFAYLDRVNVGF
                     AKLQMQTDLGFSDAAYGVGAGIFFIGYVLFELPSNLMLPRVGARRTFSRILVLWGITS
                     ACMLFVRNVPAFYAMRFLLGVFEAGFAPGMIYYLSCWYGPARMGRAIALVFVAGPLGG
                     IVGGPLSAWLMTRLTGVGGLAGWQWMFLVEGLPCIVLGLLTLRVLSDHPADAPWLNDD
                     EKQLLKHETAPGQHRAD"
     gene            839..1801
                     /locus_tag="VKJ77_13590"
     CDS             839..1801
                     /locus_tag="VKJ77_13590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46349.1"
                     /translation="MREINQQRLRYFHEVLTHGTIRGAAEHINTSPSVITRQIKLLED
                     ELGATLFERQARGVKPTEAAAHLLEFWQGYRSQQEKLEDQLHALKGLQQGRIQLAVSE
                     GFVDTLVDDVLAPFCARYPGLEISMTVLAVDALLDEVAESRAHIGLAYNPPPHPRIEY
                     RASSSQPVVLLLRRDHPLVKRTGPASIEDLRAYPLVLMPTTFGIGHVVSMLELAENIT
                     IRPTITTNSLSALKRFVTAENFVTLIGEFAAYRELASGELTTVPIAHPLFEGVQARAL
                     VKTGRPLAAGPLELLNWIQERMPMFAAPRETESRTRTTRGRRKR"
     gene            complement(1917..2843)
                     /locus_tag="VKJ77_13595"
     CDS             complement(1917..2843)
                     /locus_tag="VKJ77_13595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011518586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46350.1"
                     /translation="MNAITDLNDLRLFSEVVEHGSYTAAARSLGLQTSKLSRRIRALE
                     EELGVRLLNRTSRSLSLTETGRQFHQHCLALVAEAKAAKDIVDRTRSTPQGTVRISCP
                     VALLESGISTIIARYVQDNPEVQVLLDATNRRVDVVEEGLDFAIRVRLPPLENTDLAV
                     RQLGVSIHILVASPELAARYPTPSSIESMKEWPTLSMASSSERFVWNLVDVIDAGGRV
                     TSWAHQPRLATDDLASLRVAAISGVGVAMLPRELVEADIQAGRLQHLLPGLASTPGLV
                     HALFPTRRGMVPAVRHLLDALVAGCEGLNRQR"
BASE COUNT          616 a          890 c          901 g          528 t
ORIGIN      
        1 atccgcccga tgctggcccg gcgcggtttc gtgcttcagc aattgcttct cgtcgtcgtt
       61 cagccagggc gcgtctgcgg gatggtcaga cagcacgcgc agggtcaaga ggccaagcac
      121 gatgcatggc aggccttcca ccagaaacat ccactgccag cccgcgaggc cgccgacgcc
      181 ggtaagacgc gtcatgagcc acgctgacaa cggaccgccg acaatcccgc caagtggccc
      241 agccacgaac acaagggcga tggcgcgtcc catgcgagcg gggccgtacc agcacgagag
      301 gtaatagatc atgcccggcg cgaaacccgc ctcgaagacg ccgaggagaa atcgcatcgc
      361 gtaaaaggcg ggaacgttac gcacgaacag catgcaggcc gacgtgatgc cccagagcac
      421 gaggatgcgg ctgaacgtcc gccgggcgcc gaccctaggc aacatgaggt tgctcggcag
      481 ttcgaacagc acatagccta tgaagaagat gcccgcgccg accccgtatg cggcgtccga
      541 gaaacccagg tcagtctgca tctggagctt ggcgaagccg acgttgacgc gatccagata
      601 cgcaaacatg tagcaggtca cgagaaacgg cagaagccgc cagttgagct tgttgtagag
      661 cgcggcgaca tggtcgctcg cggtcgatgg gtggattgct gacatgcgtg tctcccggtt
      721 tcccttcact tgaccagtgg tcagggtcaa gttcatggtg gcagggcgaa aatggactag
      781 caagagcaac taagttcaca tatcgttgct tggtagacaa cacaaaggga gcggtcaaat
      841 gcgcgagatc aaccagcagc gacttcggta cttccacgaa gtgctcactc acggcaccat
      901 ccgtggcgcc gctgaacaca tcaatacctc gccgtcggtg atcacgcggc agatcaagct
      961 gcttgaggac gaacttggcg ccacactgtt cgaacgtcag gctcgcggcg tcaagccgac
     1021 ggaagccgcg gcccatctgc tggagttctg gcagggctac cggtcgcagc aggaaaagct
     1081 cgaagaccag ctgcacgcgt tgaagggact tcagcaggga cgtattcagc ttgccgtgag
     1141 cgaggggttt gtcgatacgc tggtcgacga cgtgctggcg ccgttctgcg cccgctatcc
     1201 cggcctggag atcagcatga ccgtgctggc ggtggacgcg ctgctggacg aagtagcgga
     1261 aagccgcgcg catatcgggc tcgcctacaa tccgccgccg catccgcgca ttgaatatcg
     1321 ggcgagttcc agtcaacctg tcgtgctgtt gctgcgacga gatcatccgc tcgttaaacg
     1381 gacgggaccg gcgagtatcg aggatttgcg cgcctatccg ctggtactta tgccaaccac
     1441 gttcgggatc ggccatgtcg tatcgatgct ggaactcgcc gagaacatca cgatccgccc
     1501 gacgataaca acgaattccc tgagcgcatt gaagcgcttc gtgacggctg aaaatttcgt
     1561 gacgctcatc ggcgaatttg ctgcataccg ggagcttgcg agcggcgaac tgacaacggt
     1621 tccgatcgcg cacccgctgt ttgaaggcgt gcaggcgagg gcattggtga agaccggcag
     1681 gccgctcgcc gcaggcccgc tcgaactgct caactggatt caggaacgca tgccgatgtt
     1741 tgccgcgcct cgcgaaacag aatcgcgaac gcgaacgact cgcggccggc gcaagagata
     1801 acggtgcaga ccaggctttg cactatggtt gagcagcgca tccaatcctg gcgttgtgca
     1861 tgcgaattcg atagttaagc ttaacgtctg tattccgaga ccgcgccctg gccactctag
     1921 cgctgccggt tcagaccttc gcatcctgca acgagcgcat cgagcaagtg acgcacggcc
     1981 ggaaccatgc ctcgccgcgt ggggaatagc gcatgtacaa ggcccggcgt gctagccaga
     2041 cctggcagca ggtgctgcag gcggccggcc tgaatatcgg cctcgaccag ctccctgggc
     2101 agcattgcca cgccgacgcc agatatcgcc gcaacccgga ggctggcaag gtcatcggtc
     2161 gcaaggcgcg gttgatgcgc ccatgacgtc acacgtcccc cggcgtcgat cacgtcgacc
     2221 aggttccaga caaatcgctc gctgctgctg gccatggaga gcgtgggcca ttccttcatg
     2281 gattcgatcg agctgggcgt cggatagcgc gccgccaatt cgggactggc aaccagaatg
     2341 tggatcgaca cgcctagctg gcgtacggcg agatcggtgt tctccaacgg cggaagcctg
     2401 acccggatgg caaagtccaa accttcctcg accacatcca cgcggcggtt ggttgcatcc
     2461 agcaggacct ggacttcagg gttgtcctgg acgtatcgcg cgatgatcgt ggagatgccg
     2521 gactccagta acgccacagg gcagctgatg cggacggtgc cctgcggcgt ggagcgcgtg
     2581 cggtccacga tatctttcgc ggccttcgcc tccgccacca gcgccaagca atgctggtgg
     2641 aactgccgcc cggtttccgt caaagacagg ctccggctgg tgcgattgag cagtcgcacg
     2701 ccaagctctt cttccagcgc gcgaatgcgc cggctgagtt tcgacgtctg tagtccgagg
     2761 ctgcgcgcgg ccgccgtgta gcttccatgc tcgaccacct ctgagaagag ccgaagatca
     2821 ttgaggtcag taattgcgtt catgcgcagc cttcaactcc ttttgatcgt tctattaaca
     2881 gcaacgatgc gttccaatta ggcatctatg cgcgagttca ttgcaaatat agcat
//
LOCUS       DATGBK010000977         2492 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_150085, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000977 DATGBK010000000
VERSION     DATGBK010000977.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2492
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150085"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..608)
                     /gene="thiD"
                     /locus_tag="VKJ77_13600"
     CDS             complement(<1..608)
                     /gene="thiD"
                     /locus_tag="VKJ77_13600"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HMC46351.1"
                     /translation="MTHPIPNVLTIAGSDSGGGAGIQADLKAFSALGAYGLSVVTALT
                     AQNTRGVTAIHTPDASFVTAQLDAVFDDIRIDAVKIGMLANADVVRAVAAALRRYRPV
                     HVVLDTVMISKSNHALLAPDAVAALRDELLPLATLVTPNLPEAAALLNVASAEDEDAM
                     VRQGEALRALGARAVLMKGGHLSSADSPDWLIEDSGSLRLGGP"
     gene            complement(634..1260)
                     /gene="thiE"
                     /locus_tag="VKJ77_13605"
     CDS             complement(634..1260)
                     /gene="thiE"
                     /locus_tag="VKJ77_13605"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008810733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HMC46352.1"
                     /translation="MNLDLALYLVLDPVQCGGHARALDVTRAALDGGVTIVQLRAPEW
                     HKRAWLELALDLLPLTRRYGVPLIINDHVDVALASGADGVHIGQNDLPPDVARKLLGA
                     HALIGLSVSDGTQIDHANTLGAMIDYVGVGPVFDTPTKPDASAACGIEGLAALSARSV
                     HPTVAIGGIQLHNAADVKRAGLGGIAVVSAICTAADPHLAARQLHEAS"
     gene            complement(1283..2098)
                     /gene="thiM"
                     /locus_tag="VKJ77_13610"
     CDS             complement(1283..2098)
                     /gene="thiM"
                     /locus_tag="VKJ77_13610"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004417 - hydroxyethylthiazole kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HMC46353.1"
                     /translation="MLAADLYSFAVRVRERAPLVHCLTNLVVTNFTANVLLALGAAPA
                     MVIAREEVGEFVPLANAVSVNLGTLDLPQSKAIRAAVEAANRAHKPWVLDPVAVGPLS
                     FRTAFAFDLLDAHPTVIRGNASEIISLSGGESSARGVDSTALAEAALDAAQLLALNTG
                     AIVAVTGPTDYVTDGRRTVALSNGSPLMTRVTGVGCALSATVAAFVGVADNDDRWAAT
                     VAAIAYSSIAGELASRDAALPGSFAVAYLDRLASLDSNLFAATLVSRDVASDA"
     gene            complement(2245..>2492)
                     /locus_tag="VKJ77_13615"
     CDS             complement(2245..>2492)
                     /locus_tag="VKJ77_13615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011885164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HMC46354.1"
                     /translation="HRGHVLLSAGHSIAVQNFNENLSVLVMLCLYAVLVWLDVPIQFV
                     IVLFGTFVCLMMYFVMRRHQANQRAFDSVALIGESRH"
BASE COUNT          499 a          780 c          805 g          408 t
ORIGIN      
        1 gggccgccaa gtcgtagcga tccgctgtct tcgatcagcc agtcggggct gtcggcggaa
       61 cttagatggc cgcccttcat caacaccgcc cgcgcgccca atgcgcgcag cgcttcgccc
      121 tggcgcacca tcgcgtcctc atcttcggcc gatgccacgt tcagcaacgc agccgcttcc
      181 ggcaagtttg gcgtgaccag cgtcgcgagc ggcagcagtt catcgcgcaa cgcagccacg
      241 gcatccggcg caagcaacgc gtgattgctc ttggaaatca tcacggtatc aagcaccaca
      301 tgcaccggcc gatatcgacg caacgccgcc gctaccgcgc gcactacatc ggcattggcg
      361 agcatgccga ttttcacggc atcgatgcgg atgtcgtcga aaaccgcgtc aagctgagcg
      421 gtgacaaacg acgcgtcggg cgtatggatg gccgtcacgc cgcgcgtgtt ctgcgcggtg
      481 agggcagtga caacggacaa accgtaagcg ccgagcgccg agaacgcctt gaggtcggcc
      541 tggatgcccg caccgccgcc ggaatcggaa ccggcgatgg tgaggacgtt ggggatcgga
      601 tgggtcatgg tcttcaagag gactcaggag gattcaagag gcttcatgca attgccgggc
      661 ggcgagatgc ggatcggcag cggtgcagat cgctgatacc accgcgatac cgcccagtcc
      721 cgcgcgtttg acatcggcgg cgttgtgcaa ctggattccg ccgatagcca ccgtcggatg
      781 aacagaacgc gcagacagcg cggcgaggcc ttcgataccg catgccgccg atgcgtccgg
      841 ttttgtcggg gtatcgaata ccggtcccac gccgacgtaa tcgatcatgg cgcccagcgt
      901 gttggcgtga tcgatctgcg tgccatcgga taccgacagc ccgatcagcg cgtgcgcccc
      961 aagcagcttc ctggcgacat caggcggcaa gtcgttctgg ccgatatgca cgccatctgc
     1021 gccggacgcg agcgcgacat ccacgtggtc gttgatgatg agcggcacgc cataccggcg
     1081 cgtgagcggc agcaggtcga gtgcaagctc aagccacgcg cgtttgtgcc actcgggtgc
     1141 tcgcagttgc acgatcgtga cgccgccatc gagcgctgca cgcgtcacat cgagcgcgcg
     1201 tgcatgtccg ccgcattgga cgggatcgag gacgagatac agcgcgagat cgaggttcat
     1261 gcgagggatc atccgagctt tatcacgcgt cggacgcgac gtcgcgagac acgagcgtgg
     1321 cggcgaacag gttggagtcg agcgatgcca gccggtcgag atacgcgacc gcgaaactgc
     1381 cgggtaacgc agcgtcgcgc gatgccaatt cgcccgcgat gctcgaatag gcgattgcgg
     1441 cgaccgtcgc ggcccaacgg tcatcgttat cggccacgcc tacaaatgcc gcgaccgtcg
     1501 ctgataacgc gcagccaaca cccgtcacgc gtgtcatcaa cggcgatcca ttcgataacg
     1561 cgactgtccg tcggccgtcg gtgacgtaat cggtcggccc ggtcacggca acgatggcgc
     1621 ctgtattcag cgcgaggagt tgtgctgcgt cgagcgcggc ttcggctaaa gcggtgctgt
     1681 cgacgccgcg tgcgctcgat tcaccacccg acaagctgat gatctccgaa gcgttgccgc
     1741 gaatcacggt cggatgtgca tcgagcaggt caaaagcgaa ggcggtgcga aaactcagcg
     1801 ggccgaccgc cacgggatcg agtacccacg gtttgtgcgc acgattggcg gcctcgacag
     1861 cagcgcggat cgccttgctt tgcggcaggt cgagcgtgcc gagattcacg gataccgcgt
     1921 tggccagcgg cacgaattcg cccacttcct cgcgggcgat gaccatcgcg ggtgcggcgc
     1981 ccagcgcgag cagcacgttc gccgtgaagt tcgtgacgac gagattcgtc aggcagtgga
     2041 cgagcggcgc gcgttcgcgc acgcgcacgg cgaacgaata gagatcggcg gcgagcatgg
     2101 cagggtgtaa agaaagtaat gacaagcggg attatcgcgc gccgggcggc tgagtgcccg
     2161 gtgtgatttc agcctttcgt ctggttcggc caggcgcgac ccgcacgcac tgaccgccac
     2221 tcaaagccag cgctcaatgc cgtctcaatg acgtgattcg ccgatcagcg cgaccgaatc
     2281 aaaggcccgc tgattcgcct gatgccgccg catgacaaaa tacatcatca ggcagacgaa
     2341 ggtgccgaac agcacgatca cgaattgaat cggtacgtcg agccagacga gcaccgcgta
     2401 caggcacaac atcacgagca ccgagaggtt ctcgttgaaa ttctgcaccg cgatggagtg
     2461 acccgcggac aacagcacgt ggccgcgatg ct
//
LOCUS       DATGBK010000978         5953 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_35423, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000978 DATGBK010000000
VERSION     DATGBK010000978.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5953
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35423"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VKJ77_13620"
     CDS             <1..236
                     /locus_tag="VKJ77_13620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012430444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cysteine dioxygenase"
                     /protein_id="HMC46355.1"
                     /translation="LERGAVAAVSPSIGDIHRVSNAFDDRVSISIHVYGANIGGISRH
                     VYPPDGPPKPFVSGYTNDTLPNLWNLSKERLYS"
     gene            233..1822
                     /locus_tag="VKJ77_13625"
     CDS             233..1822
                     /locus_tag="VKJ77_13625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018422536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese homology domain-containing protein"
                     /protein_id="HMC46356.1"
                     /translation="MSAIPQRNFNDVRDALLSKREIAFLDVREEDPHAQRHPLFAANL
                     SLSKIELEAFTKLPRKSVPIVLLDDGEGLAERAARRFEELGYTDVALFEGGLKGWERA
                     GGEVFRDVNVPSKAFGEFVEAKRHTPALSAEAVDALLKNGEDVVVLDARRYDEYQTMN
                     IPGSISVPGAELVLRARALAPDPKTRVIVNCAGRTRSIIGTQSLVNAGLPNPVAALRN
                     GTIGWLLAGQSLAHGSARQFATDDGRTDAASRESARAVADRAGVKRTTLAEAKRWADD
                     AERTTYRFDVRTPAEYEHAHAAGFQGTPGGQLVQETEMFAPVRGARVVLFDDDGVRAN
                     MTASWLAQMNIDVYVIDDATGADLTERGPWRAAKPLPAATPTITANELATLIDDPASQ
                     TIVLDFTASANHVKGHIPGAWWTVRSRLSLDLPALPDAKQYVLTCGSSALAAFAGPEV
                     AALTSKPVLLLEGGTAAWTAAGLPLAKGETHLASPRIDRYRRPYEGTDAPHEAMNAYL
                     EWEYGLVAQLERDGTHGFFVI"
     gene            1954..2889
                     /locus_tag="VKJ77_13630"
     CDS             1954..2889
                     /locus_tag="VKJ77_13630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018422538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46357.1"
                     /translation="MKRRSLLLIAALTAFVALRPLASVAETVLKVGDQQLQTRGILEA
                     SGQLKDVPYKIEWFNFPAAQPLGEALNAGAIDIGGLGDAPLIFAYAAGARVRAVAATR
                     SQPVDLAILVPAGSPIKSAADLKGKRIATTRGSIGHFLAIATLERAGIKLSDVTLEFM
                     QPADAKSALESGNVDAWSTWDPYVALGELRDNNRSVANGVGLSSGLSFQAATDESIKT
                     KRAEIDDFVRRVAAGQQWALSHPDEVAAIQSRVTHLPADVLKVVYQRAQLKPIAIDSA
                     VIAEQQRTADLYVRAGVIKTTLDVTPSFDAQFTAH"
     gene            2914..4140
                     /locus_tag="VKJ77_13635"
     CDS             2914..4140
                     /locus_tag="VKJ77_13635"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018422539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC46358.1"
                     /translation="MTVRHPPTALQDPIALDALADLDSTTADQWLAALTQDFAASAGA
                     LDRDAIFPHDNLARLRSAGLLALTVPQALGGRQATLPQVLKVIRAVARGEPSTALILV
                     MQCLYHLRLQANPNWPQALKEQVARDAVEHGALINSLRVEPELGSPSRGGLPGTIGRL
                     TDNGDAWILNGSKIYSTGSPGLTWFAVWGRTDESSPRVGTFLVHRDTPGIRFGEPWNH
                     LGMRATGSHEVIFEDVRVPTAHAVDLNSPEIAASGMDPLTTLWMNVLLSSIYDSVARS
                     ARDWFASWAADRKPANLGAPLSSLGSFQQTLGRIDALLLNNRVLLDAGSHGNIPLHEA
                     PAIKYLVTQNAITAVELAVEASGNPGLSRNNALERHHRDVLCSRIHTPQNDALLGAFG
                     RAAFAGLAAHQAISSN"
     gene            4153..5271
                     /locus_tag="VKJ77_13640"
     CDS             4153..5271
                     /locus_tag="VKJ77_13640"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019922342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC46359.1"
                     /translation="MSVEFIGYVSHQESSEIHLPQGPAVNPPYIAAVAQAHEYGGFDR
                     VLIAHSSASPDGFQIASFVAQQTKRLGILLAHRPGFVAPTLAARQLATLDHFSAGRTA
                     VHIISGGDDTEQQRDGDFLDHDDRYKRTDEYLDVVKRSWTSETPFDHEGAFYRVKGHR
                     SLVRPVQKPHLPVYFGGSSEAAIQVAGKHADVFALWGESLAQVAETIALVRAAAKPYG
                     RENAIRFSLSLRPIIASTEDAAWARAESILARATDVVKSNPNFTRRPSEPKNVGAQRL
                     LAEAAKGTVVDKRLWTGITALTKAAGNSTSLVGTPEQVTEALIEYYRLGISTFLIRGF
                     DPLEDALGYGRDLLPLVHAAVANEDSKANSKELEAVQA"
     gene            complement(5329..>5953)
                     /locus_tag="VKJ77_13645"
     CDS             complement(5329..>5953)
                     /locus_tag="VKJ77_13645"
                     /inference="COORDINATES: protein motif:HMM:NF019303.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HMC46360.1"
                     /translation="LRFRLHIVATYDGSRPPLDHDFDDASAQLTAAHTVVLTKIDLVS
                     PERRAQARSVVAGINPMARIVDEFSPSIRAREAFAEVDTSLSPRIVGSERTHVGETLL
                     HPRVRVFRARFTQKPNWEDVLEWLENIAGMTGDRLLRMKAIVTGPHGSDDRILLQSVG
                     TTFAAPRRLAKTSFDDLAVVFIVRDCAMVELQQAEGACEVSWTAMQR"
BASE COUNT         1209 a         1890 c         1770 g         1084 t
ORIGIN      
        1 tgctcgaacg gggtgcagtg gcggcagtat caccgtccat cggcgatatc catcgcgtga
       61 gcaacgcgtt cgacgaccgg gtgtccatca gcattcatgt gtacggcgcg aacatcggcg
      121 gcatctcgcg acacgtctat cctcccgacg gtccgccaaa acccttcgtc tccggctaca
      181 cgaacgacac gctccccaac ctctggaacc tctcgaagga acgactctac tcatgagcgc
      241 catcccccag cgcaacttca atgacgtgcg cgatgccctg ctttcaaagc gcgaaattgc
      301 attcctcgat gtccgcgaag aagatccaca cgcgcaacgt caccccttgt ttgcggcgaa
      361 cctgtcgtta tcgaagatcg aactcgaagc ctttacgaag ctgccgcgca agagcgtgcc
      421 gatcgttctg ctcgatgacg gcgaaggtct cgcggaacgc gctgcacgac ggttcgaaga
      481 actcggctat accgatgttg cattgttcga aggcggtctg aagggctggg aacgtgcagg
      541 cggcgaagtc ttccgcgatg tcaacgtacc cagcaaggcg ttcggcgaat tcgtggaagc
      601 gaagcggcat acgcctgcgt tatcggctga agcagtcgac gcgttgctga aaaacggcga
      661 ggacgtggtc gtgctggacg cgcgccgcta cgacgaatat cagacgatga acatccccgg
      721 cagcatcagc gtaccgggtg ccgaactcgt gttgcgtgcc cgtgcactcg ctcctgatcc
      781 gaagacgcgc gtgatcgtga attgcgcggg gcgcacgcgc agcattatcg gcacgcagtc
      841 gctggtgaat gcaggccttc cgaacccggt ggccgcgttg cgcaacggca cgatcggctg
      901 gctgcttgcg ggccagtcgc ttgcccacgg tagcgcgcgg cagttcgcca ccgacgacgg
      961 ccgcaccgac gccgcttcgc gtgaatcagc ccgggccgtg gccgatcgtg cgggcgtgaa
     1021 acgcacgacg ctcgcagagg cgaaacgctg ggcagacgac gcggaacgca cgacgtatcg
     1081 cttcgatgtc cgcacgccag ccgaatacga acacgcgcat gcagcaggtt ttcagggcac
     1141 accgggcggg cagctcgtgc aggaaacgga gatgttcgcg ccggtccgag gcgctcgcgt
     1201 ggtcctcttc gacgacgacg gcgtgcgcgc caacatgaca gcgtcatggc tcgcgcagat
     1261 gaacatcgac gtgtatgtga tcgatgatgc aacgggcgcc gatctgacag aacgaggccc
     1321 atggcgcgcg gcgaaaccgc tgcccgcagc cacgcccacg atcaccgcga acgaactcgc
     1381 cacgctgatc gatgatcccg cgagccagac catcgtgctc gacttcacgg cgagcgccaa
     1441 ccatgtaaag gggcacattc ccggcgcatg gtggaccgtg cgctcgcggc tttcgctcga
     1501 cctgcccgcg ttgccggacg cgaagcaata cgtgctcacg tgtggatcca gcgcgcttgc
     1561 cgcattcgcc ggacctgaag tggcggcgct cacatcgaag ccggtgctgt tgctcgaagg
     1621 cggtaccgct gcatggaccg cggcaggcct gccgcttgcg aagggcgaga cgcatctggc
     1681 gtcgccgcgc atcgaccggt atcggcggcc atatgaaggc accgacgcac cgcacgaagc
     1741 aatgaacgcg taccttgaat gggagtacgg cctcgtcgcg caactcgaac gtgacggtac
     1801 gcatggcttc ttcgtgatct aaaacgtctg atatgacgcg ggccgccccg ctccgcgtca
     1861 ttccaacttc tgcgattagc aaagcagaac aacgcgtttg tctaatgccg cggcgaatcg
     1921 tatcgtgaat cttttttcct gcatggaaga ttcatgaaac gacgcagcct cctgttgatt
     1981 gccgcgctga ctgcattcgt cgcgcttcgt cctcttgctt cggtagccga aaccgttctg
     2041 aaagtcggcg accagcagtt gcagacacgc ggcattctcg aagcatccgg ccaattgaaa
     2101 gacgtgccgt acaagatcga gtggttcaac tttcccgccg cacaaccgct tggtgaggcc
     2161 ctgaacgcag gcgcaatcga cataggcggt ctcggcgacg ccccgctgat cttcgcttac
     2221 gccgccggag cgcgcgtgcg cgcggtggcg gcaacgcgct cacaaccggt agacctcgcg
     2281 atcctcgtac cggccgggtc ccccatcaaa agcgcagcgg atctgaaggg caaacgcatt
     2341 gcgaccacac gcggttccat cggccatttt ctggccatcg cgacgctgga acgcgcggga
     2401 atcaagctct ctgacgtgac gctggagttc atgcaacccg ccgatgccaa gtcagcgctg
     2461 gagtcgggca acgtcgatgc atggtccaca tgggacccgt atgtcgcgct cggtgaattg
     2521 cgcgataaca accgcagcgt ggccaacggc gtggggcttt catcgggact gagctttcag
     2581 gccgctactg atgaatcgat caagactaaa cgcgcggaaa tcgatgactt cgtgcgtcgc
     2641 gtagcagccg gtcaacaatg ggcgttgtcg catcccgacg aggtcgcggc catccaatcg
     2701 cgcgtcaccc acctgcccgc cgatgtgctg aaggtcgtct atcagcgagc gcaattaaag
     2761 ccgatcgcaa tcgacagcgc ggtgatcgcc gagcagcagc gtaccgccga cctgtacgtc
     2821 cgcgcgggcg tgataaagac gacgctcgat gtgacaccca gtttcgacgc ccagttcacg
     2881 gcgcattaac attcgtagat aacggacctt ccgatgaccg tacggcatcc gcccaccgcc
     2941 ttgcaggacc cgattgctct cgacgccctc gccgatctcg acagcaccac cgccgatcaa
     3001 tggctcgccg cgctcactca ggatttcgct gcgagcgccg gagctttgga tcgtgatgcg
     3061 atctttcccc atgacaacct cgcgcgtttg cgtagcgcag gcttgctcgc cttgacagta
     3121 ccgcaagcgc tcggtggccg gcaggcgacg ctcccgcaag tgctcaaagt gatacgcgcg
     3181 gttgcgcgcg gcgagccgtc gacggcactg atcctcgtga tgcagtgtct ttatcatctg
     3241 cgcctgcagg ccaatccgaa ctggccgcaa gcgttgaagg aacaagtggc gcgcgatgcg
     3301 gtggaacacg gcgcactcat caactcgctg cgcgtagagc ccgaattggg ctctccttcg
     3361 cgcggcggtt tgcctggcac gatcggtcgc ctgaccgata acggcgacgc gtggattctc
     3421 aacggcagca agatctattc gaccggcagt cccgggctga catggttcgc agtgtggggc
     3481 cgcaccgacg aaagctcgcc gcgcgtgggg acgttcctgg tacatcgcga tacacccggc
     3541 attcggttcg gcgagccatg gaaccacctc ggcatgcgtg caaccggcag tcacgaagtg
     3601 atcttcgagg acgtacgtgt tcccactgcc catgcggtcg acctgaattc tcccgagatc
     3661 gccgcgagcg gcatggaccc gctgaccacg ctgtggatga acgtgctgct ctcatcgatc
     3721 tacgattcgg tcgcccggtc tgcgcgcgac tggtttgcgt cctgggccgc ggaccgcaaa
     3781 cccgccaacc tgggtgcacc gctgtccagc ctgggcagtt tccagcagac gctcggccgt
     3841 atcgatgcat tgctcctcaa taatcgcgtg ctgctggacg ccggttcgca cggcaacatt
     3901 ccgctgcatg aagcacccgc catcaagtac ctcgtgacgc agaacgccat caccgccgtt
     3961 gaactcgcgg tcgaggcaag cggcaatcca ggactaagcc gtaacaacgc actcgaacgc
     4021 catcatcgcg acgtgctgtg ctcgcgcatt catacgccgc aaaacgacgc gctgctcggc
     4081 gcattcggac gcgccgcctt cgcggggttg gccgcgcacc aggccatatc ttctaattaa
     4141 gggagcacca ctatgagcgt tgaattcatc ggctatgtga gccatcagga atcaagcgaa
     4201 atccacttac cgcaagggcc cgcggtcaat ccgccgtaca ttgccgcggt cgcgcaagcg
     4261 catgaatacg gtggttttga tcgcgtgctg atcgctcatt caagcgcgtc accggacggc
     4321 ttccagatcg cgtcgttcgt cgcgcaacag accaagcgtt tgggcatcct gcttgctcat
     4381 cggccgggct ttgtcgcgcc gacgctcgcc gcccgtcaac tcgccacgct cgatcatttc
     4441 agcgcgggcc gcaccgctgt gcacatcatc tccggcggag acgataccga acagcaacgc
     4501 gatggtgact tcctcgatca cgacgaccgc tacaagcgca ccgatgaata tctcgatgtt
     4561 gtgaagcggt catggaccag cgaaacgccc tttgatcacg aaggcgcgtt ctatcgggtg
     4621 aagggtcacc ggtcgctggt tcgtcccgta cagaagccgc atctgccggt gtatttcggc
     4681 ggttcgtcgg aagcagcaat ccaggtcgcg ggcaagcatg ccgacgtttt tgcgctctgg
     4741 ggcgagtcgc tggcccaggt cgccgagacc atagcccttg tgcgcgcggc cgcgaaaccg
     4801 tatggccgtg agaacgcaat ccgcttcagc ctttcgctgc gcccaatcat cgcttcgacg
     4861 gaagatgccg catgggcgcg cgcggaatcg attctcgcac gcgcaaccga cgtagtgaaa
     4921 agtaatccta acttcacgcg gcgaccgagc gaaccgaaga acgttggtgc gcaacgcctg
     4981 ctggctgaag ccgctaaggg caccgtggtg gacaagcgcc tgtggacggg catcaccgcg
     5041 ctgacaaaag cggcaggcaa ctccacgtcg ctcgtcggca cgcccgaaca agtgacggaa
     5101 gcgttgatcg agtattaccg cctcggcatt tccacattcc tgatccgcgg tttcgatcca
     5161 ttggaagacg cgctgggtta tggccgcgat ctgttgccgc tggtacatgc ggcagtggca
     5221 aacgaggaca gcaaagcgaa ctcaaaggaa ctcgaagcgg ttcaggcctg aacgaaatcg
     5281 agcaacgtga acggcggtga cgtcgggcaa ccgtcatgta tttcttgact accgttgcat
     5341 cgccgtccac gaaacttcgc aagctccttc ggcctgttgc aattcgacca tcgcgcagtc
     5401 gcgaacaata aaaaccactg caagatcgtc aaacgacgtc tttgcaagac gtctgggcgc
     5461 agcgaacgtt gttcctacgc tctgaagtaa aatgcgatcg tcggagccat gagggccggt
     5521 gacaatcgcc ttcattcgca gcagccgatc accagtcata ccggctatgt tttcgagcca
     5581 ctcgagcaca tcttcccagt ttggcttctg ggtaaaccga gcgcgaaaca cgcggacgcg
     5641 aggatggagc aaggtctccc cgacgtgcgt tcgctcgctg ccaacgatcc gcggcgacag
     5701 cgaagtatcc acctctgcaa aggcctcacg cgcccggatc gatggagaaa actcatcgac
     5761 aatacgagcc atcggattga tgccggcgac cacgctgcgc gcctgcgcac gccgttcagg
     5821 actgacaaga tcaatcttgg tcaacaccac cgtatgcgcg gcagtaagct gcgcagaggc
     5881 atcgtcgaaa tcgtggtcta gcggtgggcg gctaccgtcg taagtggcca cgatatgcag
     5941 ccgaaaacgt aat
//
LOCUS       DATGBK010000979         2502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_81172, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000979 DATGBK010000000
VERSION     DATGBK010000979.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81172"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(530..922)
                     /locus_tag="VKJ77_13650"
     CDS             complement(530..922)
                     /locus_tag="VKJ77_13650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46361.1"
                     /translation="MLRLGLLCGILVSRTVSGTIAAYFGWRAVYAFAAVAMVGVAAML
                     ARVLPRVEPTFSGSYGALMCSLFALLREEPVVRQTALIAALQFAAFSAFWTTLAFHLH
                     GLDARYGSETAGLFGLVGVAGASASYAV"
     gene            complement(949..1665)
                     /locus_tag="VKJ77_13655"
     CDS             complement(949..1665)
                     /locus_tag="VKJ77_13655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HMC46362.1"
                     /translation="MTPLARHYVPEQPQHVILQGLTGPAFLDEGDYLYFLACLADAAR
                     VADLAVHAWVLMPDAVQFLVTPSYESSVAMAMQAVGRRYVETFNRRHGRRGSVWRGGY
                     WATVIEPERYFLLASQVIDHAPVRNRLVAEPGNYQWSSFTHHIGLRVDSFIKDHPLYR
                     TLGNTPFERHQAYRDLGAQPLDELEVNNLMQSTLKGWVLGSAAYCEWAAQTANRRLMP
                     LLLRDRPPKVRTAGALPHVD"
BASE COUNT          532 a          761 c          743 g          466 t
ORIGIN      
        1 cttgttgctg aacgcctgct cgaacgggac aacaaccatt tgcagcgggt cgaaatcatg
       61 cacgagcgct tgcgcgagct cgactgaaaa acgtgggtgt ttttctagag agctccatgc
      121 tccttatggt cggcgcttct ctcgcgtttg cccgcaagcg gtcgctggcc gaacgcggga
      181 ataatctgcg gcagcatcga ggcgctagca aagacgatcc caacaccgca ccccccggcc
      241 agtgccatac gctccacgca tagttgccaa gcgtcgcgcc gatcgccccg cccgcaaagc
      301 ggatcgtcat ataaagcgtg ttggcgcggc tcatcgcagt gcttcgaacc gccaggttgc
      361 gtgccgtgtt cgagacatgc gcgctttgca agccgaggtc gagcaggatc acgccgacga
      421 ttaacccgcc gatgctcgcg cctttccagg caagtaacac atacgaggcg atgaagacga
      481 tgctggcggc gaaaatgacc cgacgcggat cgcgtgcatc ggtcagcttt cacacggcat
      541 aggacgcgct cgcgccggcg acaccgacga gcccgaacaa tccggccgtc tcgctgccgt
      601 aacgggcatc gaggccgtgc aggtgaaacg caagcgtcgt ccagaaagcg ctgaatgcgg
      661 caaattgcaa cgccgcgatc aaagcggtct gccgtacgac gggctcctcg cgcagcaacg
      721 caaacagcga acacatcaac gcgccgtagc tgcccgagaa ggtcggctcg acgcgtggaa
      781 ggacgcgcgc aagcatggcg gcaacgccca ccatcgcgac tgctgcgaag gcgtagacag
      841 cgcgccatcc gaaatacgca gcgattgtgc ccgataccgt gcgagagacg aggatgccgc
      901 aaagcaggcc caacctcaac aaggtttcgt tgcttgtttc tcttttgatt agtccacgtg
      961 tgggagggcg cctgccgtgc gaaccttggg cggccggtcg cgcagtagca ggggcatcaa
     1021 acgccggttg gctgtctgcg ccgcccactc gcaatacgcg gcgctgccga gcacccagcc
     1081 cttgagcgtc gactgcatca ggttattgac ctcgagttcg tcaaggggct gtgcgcccaa
     1141 atcgcggtaa gcctggtggc gctcgaacgg tgtattgccg agcgtccggt agagtggatg
     1201 gtccttgatg aagctatcga cacgcaaccc gatgtgatgc gtgaagctag accactggta
     1261 gtttcccggc tctgccacaa ggcggttgcg caccggcgca tgatcgatga cctggctcgc
     1321 gagcaggaaa taccgctcgg gctcaatcac tgttgcccag taaccgccgc gccacaccga
     1381 cccgcggcgt ccatggcggc ggttgaaggt ctcgacgtag cgacggccga ccgcctgcat
     1441 cgccatggcc acgctcgact cgtatgaagg tgtgacgagg aactgtaccg cgtcaggcat
     1501 gagtacccac gcgtggactg ccagatcggc gacgcgcgct gcgtctgcca ggcaggcgag
     1561 gaagtacagg tagtctcctt cgtccaagaa tgcgggcccc gtgagcccct gcaagataac
     1621 gtgctgcggt tgttctggga cgtagtgccg tgcaagcggt gtcatgctga attaaccgga
     1681 aatccgatgt gagaaagcga tccgacagta tcggacgcgt gacggtgcgt aacgaaattc
     1741 tacgggtaat gtgcatgcgt ttgcatcacg aacaggcctc ttttctggcc tcttttcgtt
     1801 gatttgccga tcgcagccag catctctttt atgccacggc tgaatagcag cgccgcgcta
     1861 tacgcctcca gacgttctgc ctgcgcgcca tccggcacca atacatcagg cagcacgacg
     1921 gtacagcggt cgaagcgtcc ctagtttcca ttcgcatccc acctgaagcg gtcaaagccc
     1981 agtgtaatgt ggttcgcgaa ttttatcggt aggtatccga acgataacga tagcctccaa
     2041 tccgagacct tgggcggcgg ccagtgtcaa gaagaactcg gctgccgttg cgaccggcaa
     2101 accgcagaca aagtaccgag acccggaaac tggtgccaca tggagcgatg gtttaaccga
     2161 actggataac cgaggaagcg gacgatgacg tgacgacggc aagaagggca gtttcgagtc
     2221 gggagtgtga gttcactgat gcaggatgct gccgtcgggt tgctcgatgc cgccatcgtc
     2281 agcaatcagc cacattgctg acgtagaacc cagcccatcc caatgacggc tcaggccgaa
     2341 ttgcagccat ttgcggctgg tctcgcgctt tcatctcagc gctcaccgct cctcaaaaat
     2401 cctcgagctt catcgcgtaa gacctgcaag ggctgtcgcc gtgctcgccg gcatagatga
     2461 atctcatccc gatcctctct gctactttca tcgaagcagc at
//
LOCUS       DATGBK010000980         1629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127263, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000980 DATGBK010000000
VERSION     DATGBK010000980.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127263"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /locus_tag="VKJ77_13660"
     CDS             <1..635
                     /locus_tag="VKJ77_13660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020201084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HMC46363.1"
                     /translation="ALPSLDARPVDAPGTRASLHGHESFPALDAGRLIALYGLAGFGY
                     IITATYLPFFVRNALGSIDPIQVWALFGLGAVPSCFIWHAIHMRLGTRRALFLNLALQ
                     AVGVLLPVVSPNAVGFLGSALIVGGTFMGTTTISMLAARRVAHTMRMSILAVMTACFG
                     IGQIVGPLVANAMYAPHHSFSGSLETAAAALAVAAMLCVRLGRSEQSHAD"
     gene            656..1165
                     /locus_tag="VKJ77_13665"
     CDS             656..1165
                     /locus_tag="VKJ77_13665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009240320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HMC46364.1"
                     /translation="MTTYAALLRAVNVGGTGKLPMSELRAMCVSAGFSNVRTYIASGN
                     VVFESKLSELSVKAKLERCLETYAGKPVGVLIRTGAELAAVLANNPFSSAAPNQTVAI
                     FLDAPPPADVLDTVSGQQTEEIAVGTREIYVHYKDGIARSKLKIPAAGTGTARNMNTV
                     AKLAEWTAD"
     gene            1232..1627
                     /locus_tag="VKJ77_13670"
     CDS             1232..1627
                     /locus_tag="VKJ77_13670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyketide cyclase"
                     /protein_id="HMC46365.1"
                     /translation="MLDAITISVSIDRDWQDLYNAIWRPEAFQSWASGLADSTLEECG
                     DHWKAHGPEGSVTIRFTGHNPFGVMDHYVSLSSGEEIYVPLRVLQNGAGAEVAFTLFR
                     QPDMSVEKFEADAAWVRRDLAALCAQFSS"
BASE COUNT          314 a          449 c          504 g          362 t
ORIGIN      
        1 ttgcgctgcc gagtctcgat gcacgcccgg ttgacgctcc cggcacgcgt gcaagcttgc
       61 acggacatga gtccttcccc gcgctcgatg cggggcggct gattgcgctt tacgggctgg
      121 cgggcttcgg ctatatcatc accgcgacct atctgccgtt ttttgtccgg aacgcgcttg
      181 gttcaatcga tccgatccaa gtctgggcgt tgttcgggct gggcgcggtt ccgtcgtgtt
      241 tcatctggca tgcaatccat atgcgccttg gtacgcgacg cgcgctgttc ctgaatctcg
      301 cgctgcaagc ggtaggcgtc ctcttgccgg tcgtgtcgcc gaacgcggtt ggattcctcg
      361 gcagcgcgtt gatcgtaggc ggtacattca tgggcaccac cactatttcg atgctcgcag
      421 cccgccgggt agcgcacacg atgcgcatga gcattctcgc cgtgatgacc gcatgctttg
      481 gcatcgggca gatcgtggga ccgcttgtcg ccaatgcgat gtacgcaccg catcattcgt
      541 tctcgggatc gttggagacg gctgcggcgg cgttggcggt ggcggcaatg ctttgcgtac
      601 gtctgggcag gtctgagcag agccacgcag attgaaatgg caatagaatg cgtggatgac
      661 tacctacgcc gctctcttgc gggccgtgaa tgttggcggc accggcaagc tccccatgtc
      721 cgaacttcgc gcgatgtgcg tctcagcggg tttttccaac gtgcgcacgt atatcgccag
      781 cggcaacgtt gtgttcgaaa gcaagctttc ggaattatcc gtgaaagcga aactggagcg
      841 ttgtctcgag acctatgcgg gaaagccggt aggggttttg atccggacgg gcgctgagct
      901 cgcggcggtc cttgccaaca atcccttcag ttcagccgcg ccgaatcaaa ctgtcgcaat
      961 ctttctcgat gcaccgcctc ccgcagatgt gctggatact gtgagtggcc agcaaacaga
     1021 agaaatagca gtcgggacgc gtgagattta cgtgcactac aaagacggaa tagcgcgttc
     1081 aaaactgaaa atcccggccg ccgggactgg aaccgctcgc aacatgaata ccgtggccaa
     1141 gctcgccgag tggacggcgg attaggtcga ttgtcataag gtagtttggg ttcaaattgc
     1201 agaatcgcgg cctgtttcaa ggagtaaatc gatgctcgat gcaataacga taagcgtctc
     1261 catcgatcgc gattggcaag acctgtacaa cgcgatatgg cgtcctgagg cattccagag
     1321 ttgggcgtcg ggactggcag attcgacgct cgaagagtgc ggcgatcact ggaaagcgca
     1381 cggcccggag ggaagcgtga ccattcgatt caccggccac aatccgttcg gcgtgatgga
     1441 ccattacgtc agcctcagca gcggcgaaga aatctatgtg ccgctacgcg tattgcaaaa
     1501 tggtgccggc gccgaggtgg cattcacgtt gtttcggcaa ccggatatgt cggttgagaa
     1561 attcgaagcc gacgcggctt gggtgcgacg cgatctggcc gcgctctgtg cgcagttttc
     1621 ttcctgatt
//
LOCUS       DATGBK010000981         2336 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_11671, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000981 DATGBK010000000
VERSION     DATGBK010000981.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2336
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11671"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VKJ77_13675"
     CDS             complement(<1..212)
                     /locus_tag="VKJ77_13675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46366.1"
                     /translation="MKGISLFRRAAFATAVATTAMLGAVQTAHAEPMRIGYWTSGVSL
                     GFGAVLEAQKFLQQRGLDVTFIRFSDV"
     gene            complement(234..1007)
                     /locus_tag="VKJ77_13680"
     CDS             complement(234..1007)
                     /locus_tag="VKJ77_13680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005879714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46367.1"
                     /translation="MSTVPRSSFASTVAQRVVLIVLLLAAWWVASLRMPQFVLPGPLR
                     VAHAFVGLLQSGTFFDDLGITLYRVVAGFLLAAAVAAPLGIALGSNPRVAHFFEPLLS
                     IVNTVSSAIWAVFAIIWFGISNATTIFVVFMTAMPLILTNVWQGALTVDRNHIELARS
                     FRMSQTQIMRKIFLPTILPHFFAGARLAFGFGWRVSLVAETIGSSNGIGYRLRQAADL
                     VQTDQVFAWTVTLVVLMLLLEAGVLKPLERRLFRWKKTD"
     gene            complement(1011..1700)
                     /locus_tag="VKJ77_13685"
     CDS             complement(1011..1700)
                     /locus_tag="VKJ77_13685"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005879713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46368.1"
                     /translation="MDHVSFDVAQGEIVALLGASGCGKSTLLNMVAGLLEASEGELWI
                     DGKRTGGTKDYKRNALSYMFQEDRLLPWRTARANAEFGLEAASPAIPARERHTRANEV
                     LDLVGLQGFGDAHPHQLSGGMRSRVALARSLVTGPRILLMDEPFSKLDPQMRSQMHDE
                     LLRIHAMQRMTVLFVTHDVEEAIVLADRVVVLAPRPGRVREIVDVELPRPRTATDPTV
                     AEAIRQLRLLI"
     gene            complement(1778..>2336)
                     /locus_tag="VKJ77_13690"
     CDS             complement(1778..>2336)
                     /locus_tag="VKJ77_13690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018443785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC46369.1"
                     /translation="LVRLVHEGFVRSLPRQGYRIAAITLKDVEEVFALRVQLEPLAAR
                     LACGRVDVELLRRLEAACRVPHPERALSAQIDVFLDANREFHLAIAAASGNERLHRTL
                     ASLLDEMSRLVALGFGVQGTKPEIKHDHNAMIDAFIAGDGRRAETIARRHIETFQSMT
                     MEKVYASLSSAGASLPLYTLAELRR"
BASE COUNT          506 a          733 c          686 g          411 t
ORIGIN      
        1 acgtcggaga agcgaatgaa ggtgacatcg aggccacgct gctgcaggaa tttttgtgct
       61 tcgagcactg cgccgaagcc caggctcacg ccgctcgtcc aatatccaat gcgcatgggt
      121 tccgcgtgcg ccgtttgcac agcaccgagc atcgcggtcg tcgcaacggc ggttgcaaac
      181 gccgctcgcc tgaagagtga aatgcctttc atggttcctt gtttcccatt agatcagtcg
      241 gtctttttcc agcgaaacag gcggcgctca agcggcttca agacgcccgc ttcaagcagc
      301 agcatcagga caacgagcgt gacggtccac gcgaaaacct gatcggtctg cacgagatcg
      361 gccgcttgcc gcaggcgata gccaatgccg ttcgacgacc cgatcgtctc cgccaccagc
      421 gacacacgcc aaccaaagcc gaacgcaagc cgcgcgcccg cgaaaaaatg cggcaggatg
      481 gtcggcagga aaatcttgcg catgatctgc gtctgcgaca tgcgaaagct gcgcgcgagc
      541 tcaatgtggt tacggtctac tgtcagtgcc ccttgccata cgttcgtcag gatcagcggc
      601 attgccgtca tgaacaccac gaagatggtg gttgcgttcg agatgccgaa ccagatgatg
      661 gcgaacaccg cccagatcgc cgacgacacg gtgttcacaa tcgacagcag cggctcgaag
      721 aaatgcgcca cgcgcgggtt cgaaccaagc gcaatgccaa gaggcgcagc gaccgcggcc
      781 gccagcagaa atcccgccac gacgcgatac agcgtgatac cgaggtcatc gaagaacgtg
      841 ccactttgta ggagtccgac aaatgcgtgc gccactcgca gtggtcctgg gagtacaaac
      901 tgcggcatgc gcagcgacgc gacccaccat gccgccaaca gcaggacaat cagcaccacg
      961 cgttgcgcaa cggttgaagc gaacgaacta cgcggaacag tggacataga tcagatcaga
     1021 agacgcaatt ggcggatcgc ctcggccacg gtgggatccg tggcggtacg cgggcgcgga
     1081 agctcgacat cgacaatctc gcgtacgcgg cccggacgcg gcgcgagcac cacgactcga
     1141 tccgcaagca cgatcgcttc ctcgacgtca tgggtcacga acagcacggt catgcgctgc
     1201 atcgcgtgaa tgcgcagcag ttcgtcgtgc atttgggagc gcatctgcgg gtcaagtttt
     1261 gagaacggtt cgtccatcag caggatgcga ggaccggtga caaggctccg tgcgagagcg
     1321 acacgactgc gcatgccgcc tgatagctga tgcggatggg catcgccgaa accttgcagt
     1381 ccgaccagat cgaggacctc gttcgcgcgc gtatgacgtt cgcgagcagg aatcgcgggg
     1441 ctcgctgctt caaggccgaa ctcggcattc gcacgcgcag tgcgccaggg caacagccgg
     1501 tcctcctgga acatatacga gagcgcgttg cgtttgtagt ccttcgtccc cccggtccgc
     1561 ttgccgtcga tccagagctc gccctcactc gcttcgagca gccccgccac catgttgagc
     1621 agcgtgctct tgccgcatcc cgacgcgccg agcagcgcca ctatttcacc ttgcgcgaca
     1681 tcgaaggaaa cgtgatccaa aactttttgg attccgaagt tctttcccac gccgcgtaat
     1741 gagatcgctg cgggaattgc agcgaaaacg gcagcgctca tcggcgaagc tccgccagcg
     1801 tgtacagggg caacgatgca cccgcgctgg aaagactcgc gtagaccttc tccattgtca
     1861 tgctctggaa cgtctctata tgacggcgcg caatggtctc tgcacgacgt ccatcgcctg
     1921 cgatgaatgc atcgatcatc gcattgtgat cgtgcttgat ctcgggtttg gttccttgca
     1981 cgccgaagcc aagcgcaacg aggcgcgaca tttcatcgag caggctcgcg agcgttcgat
     2041 gcaaccgctc gttgccgctc gccgcggcta tggccagatg aaattcgcga ttcgcgtcga
     2101 gaaaaacatc gatttgcgcc gacaacgctc gctccggatg cggcacgcgg cacgccgctt
     2161 cgaggcgccg gagcaactcc acgtcaacgc ggccacaggc tagccgcgct gccaatggtt
     2221 caagttggac ccgcagcgcg aacacctctt ccacgtcttt caatgtgatc gctgcaatgc
     2281 ggtaaccctg tcgcggcaga gaacgcacga aaccttcgtg cacgagtcgc acgagg
//
LOCUS       DATGBK010000982         2138 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_58215, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000982 DATGBK010000000
VERSION     DATGBK010000982.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2138
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58215"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2138)
                     /gene="mdeB"
                     /locus_tag="VKJ77_13695"
     CDS             complement(<1..>2138)
                     /gene="mdeB"
                     /locus_tag="VKJ77_13695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007590484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-ketoglutarate dehydrogenase"
                     /protein_id="HMC46370.1"
                     /translation="WNALAMVVRANKAYGELGGHIASYASAADLFEVGFNHFFRAAAP
                     DAGEGTGGDLVYFQPHSSPGVYARAFLEGFLSEEHLQHYRQEIVGPGLCSYPHPWLMP
                     DFWQFPTGSMGIGPINSIYQARFMRYLQNRGLAKTQDRKVWGFFGDGEMDEPESIGAL
                     SLAAREQLDNLVFVINCNLQRLDGPVRSNGRIIDELEAQFIGAGWNVIKVLWGSDWDA
                     LFARDQTNALLRAFAHTVDGQFQTFSANDGGYNRERFFGQNPELAALASHLSDEDIDG
                     LRRGGHDVRKLHAAYAKALSHRGQPTVILAKTMKGFGMGTSGQGRMTTHQQKKLGFDD
                     LKAFRDRFRLPLSDADVEAVKFYKPAENSPEMQYLHARRAGLGGYLPRRRRAASKGLI
                     VPPIATWGQFAIDAAGKEMSTTMAIVRMFGTLMKDATLGPRVVPVVADEARTFGMANM
                     FRQVGIYSPLGQLYEPEDLGSMLYYREDTKGQILEEGISEAGAVSSWIAAATSYSVHD
                     LPMLPFYIYYSMFGFQRIGDIIWAAADQRARGFLIGATAGKTTLGGEGLQHQDGSSHL
                     VASTIPNCRAYDPAFAYEVAAIVDEGMREMVERQRDVFYYVTVMNENYAQPSVPGDDL
                     ETLREGILKGMYPLATEPDATAQVQLLGAGAILGEVIAAQRMLRDDWGIEAAVWSVTS
                     FTELQRDGMASERLARLGETAPAPYVSTML"
BASE COUNT          418 a          702 c          618 g          400 t
ORIGIN      
        1 aaagcattgt gctcacatag ggcgcggggg ccgtctcgcc gagccgtgca agccgctcgg
       61 acgccatgcc gtcgcgctgc aactcagtga agctcgtcac gctccatacc gccgcctcaa
      121 tgccccaatc gtcgcgtaac atccgctgcg ccgcgatgac ctcgccgaga atcgcgcccg
      181 caccgagcaa ctgcacctgc gccgtggcgt ccggttccgt cgcaagcgga tacatgcctt
      241 tgagaatgcc ctcgcgcagc gtctcgagat cgtcgccggg caccgatggc tgcgcataat
      301 tctcgttcat caccgtgacg taatagaaca cgtcgcgttg gcgctcgacc atctcgcgca
      361 tgccttcgtc gacgatagcc gccacttcat aggcaaacgc gggatcgtat gcacggcagt
      421 tcggtatcgt cgatgccacg agatggctgc tgccatcctg atgctgcagc ccttcgccgc
      481 caagcgtcgt cttgcccgcg gtcgcgccga tcaggaaacc gcgtgcgcgc tggtccgccg
      541 ccgcccagat gatgtcgcca atgcgctgga agccgaacat cgagtaatag atgtagaacg
      601 gcagcatggg cagatcgtgc acgctgtacg acgtcgccgc agcgatccat gacgacaccg
      661 cgcccgcttc tgaaataccc tcttcgagaa tctgcccctt ggtgtcctcg cggtaataca
      721 gcatggagcc aagatcctcc ggctcgtaca actgcccgag cggcgaatag atgccgactt
      781 gccggaacat gttcgccatg ccgaacgtac gcgcctcatc ggcaaccacc ggcaccacgc
      841 ggggcccaag cgttgcgtcc ttcatcagcg tgccgaacat gcgcacgatc gccatggtgg
      901 tcgacatttc cttgcctgcc gcgtcgatgg cgaactggcc ccaggttgca atcggaggga
      961 cgatcagccc cttcgacgcc gctctccgcc ttctgggcag atagcctcca aggcctgcgc
     1021 gtcgtgcgtg caggtactgc atctccggac tgttttccgc aggtttgtaa aacttgactg
     1081 cctcgacatc agcgtccgac agcggcagac gaaagcgatc gcgaaacgcc ttgaggtcgt
     1141 cgaagccaag cttcttttgc tggtgcgtgg tcatcctgcc ttggcccgac gtccccatgc
     1201 cgaagccctt catcgtcttg gcgaggatca ccgttggctg gcctcggtga ctcagcgctt
     1261 tcgcataggc cgcatggagt ttgcgcacgt cgtggccgcc acggcgcaag ccgtcgatat
     1321 cctcgtcgct gagatgcgaa gccaatgcgg cgagctcggg attctggccg aagaaacgct
     1381 cgcggttata accgccatcg ttagccgaga aggtctggaa ctggccatcg accgtatgcg
     1441 cgaatgcacg cagcaacgcg ttcgtctggt cgcgtgcaaa gagcgcgtcc cagtcggagc
     1501 cccacaggac cttgatcacg ttccagcccg cgccaataaa ctgcgcttcg agctcgtcga
     1561 taatgcggcc gttgctgcgc accggaccat cgagccgctg caggttgcaa ttgatgacga
     1621 acaccaggtt gtcgagttgt tcgcgcgcag ccagcgacaa ggcgccgatc gattccggct
     1681 cgtccatctc gccatcgccg aagaagcccc acaccttgcg gtcctgggtc tttgcaagac
     1741 cgcggttttg caggtagcgc atgaagcgcg cttgatagat cgaattgatc ggaccgatgc
     1801 ccatcgagcc cgtggggaac tgccagaaat ccggcatgag ccacggatgc ggatacgaac
     1861 acagcccggg tcctactatc tcctgccggt agtgctgcaa atgctcttcg ctaagaaagc
     1921 cttcgaggaa tgcgcgggca taaacgcccg gcgatgaatg cggctggaaa tacacaagat
     1981 cgccgcccgt gccttcaccc gcgtccggcg ctgcagcgcg gaagaaatgg ttgaaaccca
     2041 cttcgaagag atcggccgca gacgcatagc tcgcaatatg cccgccgagt tcgccataag
     2101 ccttgttagc gcgcacgacc atcgcaagcg cgttccag
//
LOCUS       DATGBK010000983         3757 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_104237, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000983 DATGBK010000000
VERSION     DATGBK010000983.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104237"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..719
                     /gene="bioD"
                     /locus_tag="VKJ77_13700"
     CDS             <1..719
                     /gene="bioD"
                     /locus_tag="VKJ77_13700"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006398099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HMC46371.1"
                     /translation="PLSLFVTGTDTEIGKTLVSAALLHGFAALGLRAAAMKPIAAGAF
                     ERDGEWHNEDADQLDAAANVALPPSIRTPFMLKEAAAPHIAAARENVSLDIARIVEAH
                     QFAVQQADVVVVEGVGGFRVPLTDVHDTADLAFALNLPVVLVVGMRLGCISHALLSAE
                     AIAARGLHLVGWVANQIDPAMLFPAENIEAIRLRLDSQYNAPLLGTIPRLTSPDARAA
                     TTYIDTSLLLNTLRSAGAGQ"
     gene            755..1804
                     /gene="bioB"
                     /locus_tag="VKJ77_13705"
     CDS             755..1804
                     /gene="bioB"
                     /locus_tag="VKJ77_13705"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HMC46372.1"
                     /translation="MTQVQSTDKAAQPTAPQTLARWRVADIVALYDLPFNDLMFRAQA
                     VHREHFDANTVQLSTLLSIKTGGCPEDCAYCPQSSHHDTGLKAEKLMAVDEVLKAAEI
                     AKANGATRFCMGAAWRNPKDQHLEPIADMIRGVKAMGLETCVTLGMLEGHQAARLRDA
                     GLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLEHVRDAGINVCCGGIVGMGESRRERA
                     GLITQLANMEPYPESVPINNLVQVEGTPLTGTAPLDPFEFVRTIAVARITMPTAMVRL
                     SAGREQMDEALQALCFLAGANSIFYGDQLLTTSNPQAEADRKLLERLGMRAEASQQMQ
                     TAEACDVKCGHAQVQ"
     gene            complement(2034..3032)
                     /locus_tag="VKJ77_13710"
     CDS             complement(2034..3032)
                     /locus_tag="VKJ77_13710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006407121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC46373.1"
                     /translation="MAGLKHWAAIATLSFTTFAHAETALLNVSYDVTRELYKDIDTAF
                     IADYKQKTGQTLSVRQSHGASSAQALSVMQGLQADVVTMNQPNDIDLLVERGGLVPAN
                     WRTLLPNNAVPYTTTMVFLVRHGNPKNIKDWSDLARPGVQVVIANPKTSGNGRYAYLA
                     AWGYKKQQGATDEQAQAFEKAIFKNVPVLDTGGRGATTTFTQRGIGDVLVTFENEVAL
                     MNAGASGKDFDAVYPSVSLLAEPPVAVVAKVVDKRGTRKEAQAYLDYLWTPAAQEIIA
                     QHHLRPRNAEVLAKHASEFKPIKTFTVEQVFGNWQKAQQTHFSDGGTFDQVIVDKN"
     gene            complement(3117..3737)
                     /locus_tag="VKJ77_13715"
     CDS             complement(3117..3737)
                     /locus_tag="VKJ77_13715"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC46374.1"
                     /translation="MSSCSTSAWPPRLVTVPGLHGSEGAHWQTWLERQLPKSRRVDQD
                     DWDAPQLDAWAQSVADTVTSVRGPVILAAHSFGCLAAAHAIAQGLTGDAVAGVLFVAP
                     AIPDKFRFAGAFEPRRLGVPSVLIASMTDPWMPFDQAMRLASQLGSAFVNLGDAGHIN
                     TAAGFGPWPRAKYFVDTLIHCAAPAHFAEQPDVFDRFERVEQAAYG"
BASE COUNT          747 a         1184 c         1117 g          709 t
ORIGIN      
        1 cgccactctc actcttcgtc accggcaccg ataccgagat cggcaagacg ctcgtatcgg
       61 ctgctttgct gcatggcttc gccgcactcg gcctgcgcgc cgccgcgatg aaacccatcg
      121 cggcaggcgc gtttgaacgc gacggcgagt ggcacaacga agacgccgat caactcgatg
      181 ccgccgcgaa cgtcgcgttg cctccatcga tacgcacgcc attcatgctc aaagaagccg
      241 ccgcgccgca cattgcggcg gcacgcgaga acgtgtcgct ggatattgcg cgcatcgttg
      301 aggcgcacca gttcgcggtg cagcaagcgg acgtggtcgt cgtagaaggc gtgggcggat
      361 ttcgcgtacc gctcaccgat gtccacgata ccgccgacct cgcgttcgcg ttgaacctgc
      421 cagtcgtgct ggtggtcggc atgcggctgg ggtgcatcag ccacgcgttg ctgagcgctg
      481 aggctatagc cgcacggggg ctgcatctgg tgggctgggt cgctaaccag atcgatcccg
      541 ccatgctgtt tcccgctgaa aacatcgaag caatccggct acggctggac agtcaataca
      601 acgcgccgtt gctcggcacg attccccgcc tcacgtcgcc ggatgctcgc gcggctacga
      661 cttatataga tacctccctg ctgctgaaca cgcttcgttc agccggcgcg ggccagtaat
      721 tcatcgtgat tcgcaaaacg aaaaggatcc tcacatgacg caagtgcaat ccaccgacaa
      781 agccgctcaa cccaccgcac cgcaaacgct ggctcgctgg cgcgtggcgg atatcgtcgc
      841 gctctacgac ctgccgttca acgacttgat gtttcgtgcg caggctgtgc atcgcgaaca
      901 cttcgatgcc aacacggttc agctctccac gctgctgtcg atcaagaccg gcggttgccc
      961 ggaagattgc gcgtattgcc cgcagtcgtc gcatcacgac acagggttga aggccgaaaa
     1021 actgatggcc gtcgatgaag tcctcaaggc cgccgaaatc gccaaggcga acggcgcgac
     1081 gcgtttctgc atgggcgcgg catggcgcaa tccgaaggac cagcatctgg aaccgatcgc
     1141 cgacatgatt cgcggcgtga aggcaatggg cctcgaaacc tgcgtgacac tcggcatgct
     1201 ggaggggcat caggcggcgc gcctgcgcga cgcggggctg gactactaca accataacct
     1261 cgatacatcg ccggagttct acggccagat catctcgacg cgcacgtatc aggatcgtct
     1321 ggatacgctc gaacacgtcc gcgatgccgg tatcaacgtg tgttgcggcg ggattgtcgg
     1381 catgggcgaa tcgcgtcgcg agcgcgccgg gctgatcacg caactggcga acatggagcc
     1441 gtatccggaa tcggtgccta tcaacaatct ggtgcaagtg gagggcacgc cgctgacggg
     1501 taccgcgccg ctggatccgt ttgaattcgt acgcacgatc gcggttgcgc gcatcacgat
     1561 gcctacggcg atggtgcggt tatcggcggg acgcgagcag atggatgaag cgctgcaggc
     1621 gctgtgtttc ctggccggcg cgaactcgat tttctacggc gatcaattgc tgacgacgag
     1681 caacccgcag gctgaagccg accggaaatt gctggagcgt ttgggaatgc gagcagaagc
     1741 gtcgcagcag atgcaaacgg ccgaggcttg cgacgtgaaa tgcgggcacg cgcaggtgca
     1801 gtgaccaagc agctttcact ggtccaggcc gtgaaggtgc ggtgaagcgc agtcagtcga
     1861 tgtccaaaat cccccgcgat cgtcagatcg cgggggattt tttgctcatt gcagggtctg
     1921 ctccccgtaa gcggcaagaa ggtcccggct aaggcgctca aacgaactta aggggcaatg
     1981 aattgcccct taaagctacg cgctcatttc aagcaaagct gtctatcgcc ccctcaattc
     2041 ttatccacaa tcacctgatc gaacgtgccg ccatcggaga aatgggtttg ctgcgctttc
     2101 tgccagttgc cgaaaacctg ctccaccgtg aatgtcttga tcggcttgaa ttcgcttgcg
     2161 tgcttggcaa gcacctcagc gttacgcggc cgcagatgat gttgcgcgat gatttcctgc
     2221 gccgccggcg tccacaaata gtccaggtac gcctgcgctt ccttgcgcgt cccgcgcttg
     2281 tccacgacct tggcaaccac cgcgaccggc ggttcagcta acaaactcac cgacggatac
     2341 accgcgtcga aatccttgcc cgatgcgccc gcattcatca acgcaacttc gttttcaaac
     2401 gtcaccagca cgtcgccaat accgcgttgc gtgaacgtcg tcgtcgcgcc gcgaccgccc
     2461 gtatccagca ccggcacgtt cttgaagatg gctttctcga acgcttgagc ctgttcatcg
     2521 gtggcaccct gctgcttctt gtagccccac gccgccagat acgcatagcg cccgttgccc
     2581 gacgtcttcg gattcgcgat cacgacctgc acgccgggac gcgcgagatc gctccagtcc
     2641 ttgatattct tcgggttccc atggcgcacg agaaacacca tggtagttgt gtacggcact
     2701 gcgttattcg gcagaagcgt gcgccagttg gctggtacaa ggccaccgcg ctcgaccagc
     2761 aagtcgatgt cgttcggctg gttcatcgtg accacgtcag cctgcagacc ctgcatcacc
     2821 gacaaagcct gcgcactcga cgcgccatgc gactggcgca cggaaagtgt ctggccggtc
     2881 ttctgcttat agtcagcgat aaacgcggta tcgatgtcct tgtacagctc gcgcgtgacg
     2941 tcataagaga cgttcagcaa cgccgtttcc gcatgagcga atgtagtgaa actcagcgtc
     3001 gcgattgctg cccagtgctt caaacccgcc atgcatcccc cgattgttcg aatagtgaaa
     3061 accgctgcga agcggcgatt ctatcgaaaa gccggggctg gaatgcatcg gacacctcat
     3121 ccataggccg cctgttcgac gcgctcgaag cggtcgaaca cgtcgggttg ctccgcgaaa
     3181 tgcgccggag ctgcgcaatg aatcaaggta tcgacgaaat atttggcgcg cggccacggg
     3241 ccgaaacccg ccgccgtgtt gatgtgcccg gcatcgccca gattcacgaa cgcgctgcca
     3301 agctggctcg cgaggcgcat cgcctggtca aagggcatcc acgggtcagt catgctcgca
     3361 atcagtaccg atggcacgcc gagacggcgc ggttcgaacg caccggcgaa ccggaacttg
     3421 tccggaatgg caggcgcgac aaacagcacg ccggcaacgg cgtcgccggt cagtccttgt
     3481 gcgatcgcgt gcgcggccgc gaggcaaccg aaactatgcg ctgcaagaat gacggggcca
     3541 cgaacgctcg tcaccgtatc cgcgacggat tgcgcccacg cgtcgagttg gggcgcgtcc
     3601 cagtcgtcct ggtcgacacg tcgcgatttc ggcaattgcc gctccagcca tgtttgccag
     3661 tgcgcgccct cgctgccgtg caaacccggt acggtaacga gccgcggcgg ccaggcggat
     3721 gtgctgcatg aactcatgtg aacctcgctg ccagctc
//
LOCUS       DATGBK010000984         3147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_335568, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000984 DATGBK010000000
VERSION     DATGBK010000984.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3147
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335568"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VKJ77_13720"
     CDS             complement(<1..269)
                     /locus_tag="VKJ77_13720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC46375.1"
                     /translation="MKKPNSGNTLTPAEYLVDARHVGKHFGALKVLDDVSLAVRKSEV
                     TCIIGPSGSGKSTLLRSLAFLEEYSEGEIYIEGELIGYVTDRNGRR"
     gene            complement(320..988)
                     /locus_tag="VKJ77_13725"
     CDS             complement(320..988)
                     /locus_tag="VKJ77_13725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006481301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC46376.1"
                     /translation="MAIQFDPTVLTDSLPALAEGFATTIAVWIGGVLIGMAIGFAIAL
                     LQIFCGKWVRGFLRAYIEVFRGTPFLVQLFVLYYGGPSLGLSLEPLTAGIVGLGLYGS
                     AYFAEAFRSGFTSVPRGHIEAAECLGFTRLQVIMRVQLPQMLVIIVPALTNLIIVLSK
                     ETAVLSVVTVPELTFVLTGIGSERFAFVETLLALCVCYLVLVEVASRAGQWVEIRVGR
                     FLTR"
     gene            complement(1001..1651)
                     /locus_tag="VKJ77_13730"
     CDS             complement(1001..1651)
                     /locus_tag="VKJ77_13730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018420800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC46377.1"
                     /translation="MFSLHALLDALPYLIKAAQATVLISLVGLMVGFIVAIAVCSARL
                     SKNFFVSKLGGAYVGFFRGVPLLVQLLLTYYFLPFIGINVPPLVAAAAAVSLCEAAYL
                     AEILRGGFIGIPHGQLEAAQLLGLSRLHAVLRIQVPQALRTTMPSLVNEMVMLVKASS
                     LISVVGVADITRTAQNIAASTYRPLEAYVAAGLVYLVINGALSLAGHRAERRMERA"
     gene            complement(1739..2566)
                     /locus_tag="VKJ77_13735"
     CDS             complement(1739..2566)
                     /locus_tag="VKJ77_13735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46378.1"
                     /translation="MNFFSKWKGRLLVAALVATAVSAHAEDQLAKVKKAGELVVGTEM
                     QFAPFDFLENGQQQGFNKDFFVELSKELGVKVRSIDLPWPSVLPGLEAGKFDIVSGPV
                     TITKARMERYEFTLPIADGTVALLKRANDTSIKTNADVAGKTVGGGKATAQLDQLKQY
                     VATLPGKTSVREYIDNNQAYADLAAGRIVAVGNSLPNIAYVARQRPDTFAVVQPPFGT
                     KVYFGYLGRKDADSKPLLDAINQAIVKMHGDGRLAALQNKWFGVTMDTPTTMPSPNY"
BASE COUNT          661 a          957 c          937 g          592 t
ORIGIN      
        1 cgccggccgt tgcggtcggt gacatagccg atcaattccc cttcgatata gatctcgcct
       61 tcgctgtatt cctcgaggaa cgcaagcgaa cgcagcaggg tgcttttccc cgaacccgat
      121 ggtccgatga tgcaggtcac ctccgacttg cgcacggcga gcgagacgtc gtcgagcact
      181 ttcagcgcgc cgaaatgctt gccgacatgc cgcgcatcga caagatattc ggccggcgtt
      241 agcgtgttgc cagaattcgg tttcttcatg acgggttctt catgattcag cgctcagttt
      301 gatgggggtc aacgcgcgtt caccgcgtga ggaagcggcc tacgcggatt tcgacccact
      361 gtccggctcg cgacgccact tccacgagca cgagataaca cacgcacagc gcgagcaagg
      421 tttcgacgaa cgcaaaccgc tccgagccga taccggtcag cacgaacgtc agctccggca
      481 cggtgacgac cgacagcacc gccgtttcct tgctcagcac aatgatcagg ttggtcagcg
      541 ccggcacgat gatgaccagc atctgcggca actgtacgcg catgatgacc tgcagccgcg
      601 tgaagccgag gcactcggcg gcttctatgt gaccgcgcgg cacggaggta aagccggagc
      661 ggaaggcttc cgcgaaatac gcgctgccat agagccctag tccgacaata ccggccgtca
      721 gcggttcaag cgaaagccca agcgaaggcc caccgtaata cagcacgaaa agctgcacga
      781 gaaacggcgt tccccggaac acctctatgt aagcgcgcaa gaatccgcgc acccatttgc
      841 cgcagaatat ctgcagcaag gcgatagcga agccgatcgc catgccgatc aacacgccgc
      901 cgatccacac ggcgatggtt gtcgcaaacc cttcggcgag agcgggcagg gagtcggtca
      961 ggaccgtggg gtcgaattga atggccatgg gtatgcctgt ttatgcccgt tccatgcggc
     1021 gttcggcgcg atgcccggcc agcgacaacg ccccgttgat gaccaggtac accagcccgg
     1081 cggcaacata cgcctccagc ggccgatacg tgctggcggc aatgttctgc gcggtacgcg
     1141 tgatatcggc gacaccgact actgaaatca gcgacgacgc tttcaccagc atcaccatct
     1201 cattgactag cgagggcatc gtggtgcgca gcgcctgagg aacctggatg cgcaacacgg
     1261 cgtgcagccg cgataaaccg agcaactgcg ccgcttcgag ttgcccatgc ggaatgccga
     1321 taaatccgcc tcgcaggatc tccgcgagat aagcggcttc gcatagcgaa acggcggcag
     1381 cggcggccac gagtggcggc acgttgatgc cgatgaaggg caggaaatag taggtaagca
     1441 gaagctgcac gagcaacggc acgccgcgaa agaagccgac gtacgcgccg ccgagcttcg
     1501 agacgaagaa gttcttcgag agccgggcgc tgcacacggc gatcgcaaca atgaagccaa
     1561 ccatcagccc gacgagcgaa atcaggaccg tggcttgcgc ggccttgatc agatagggaa
     1621 gggcatcgag caacgcgtga aggctgaaca tgagctgtcc ggcaaggagc agggcacggg
     1681 tgtgccctgc agtgcatcaa tggttcaaag gttcgctagt tcagcggcga tcaaccgttc
     1741 aatagttagg cgacggcatg gtggtaggcg tgtccatcgt tacgccgaac cacttattct
     1801 gcaaagcggc gagacgacca tcgccgtgca tcttgacgat cgcctgattg atcgcatcga
     1861 gcagtggctt gctgtccgcg tccttgcggc cgagataacc gaaatacacc ttcgtgccga
     1921 acggcggctg aacgaccgcg aatgtgtccg gacgctggcg cgctacatac gcgatattcg
     1981 gcagcgaatt gcccacggcg acaatccggc cggccgcgag gtccgcatag gcctgattgt
     2041 tgtcgatgta ttcacgcacg ctcgtcttgc ccggcagcgt ggcgacgtac tgcttcaact
     2101 ggtcgagctg cgcggtggcc ttaccgccgc cgactgtctt gccggcaacg tcggcgttcg
     2161 tcttgatgct ggtgtcgttg gcacgtttga gcaacgcaac cgtgccgtca gcaatcggca
     2221 gggtgaactc ataccgctcc atgcgcgcct tggtgatggt caccgggccg ctgacaatat
     2281 cgaacttgcc ggcttcgagg cccggcagca cgctgggcca cggcaggtcg atggagcgta
     2341 ctttcacacc cagctccttc gacaactcga cgaagaagtc cttattaaag ccttgttgct
     2401 ggccgttttc caggaagtcg aacggtgcga actgcatctc ggttccgact accagttcgc
     2461 ccgctttctt gaccttcgcc aactggtctt ccgcgtgcgc cgaaaccgct gtcgcgacca
     2521 atgcggccac gagcagacga cccttccact tcgagaaaaa attcattgtt gaactcccct
     2581 ggttaaaagt gctcccggct tgggcaaaag tgcgaaccgg tgcgccgacc tgcatgtggt
     2641 gcgattcagt atataccgtc aatttgcgtt gccaagcgtg tcaaaaatac ttctcgccgc
     2701 accatttcaa ggcttacaga cttcgcgaaa acgctgggtt gcgttcggct aattggcggt
     2761 atatacagac acttgatctg aattctggcg ggcgctcatg gcttatccgt agacacttac
     2821 ggccaggttg ggcatcggga cgtcagtcat gaacggtccc gcgcaggcat tgcatggcag
     2881 cgcgcagcaa agcgattttt gggtcggccg cgcgtcttgc ggcggttcgg catgatgccc
     2941 gtcacacacg tgcaacggcc cgttcgggct ccacggtata gacggcgatg aaacttcgga
     3001 gcacctggat gacctcgact tctcacatcc ccgtcgtcga tctggcggcc gttcgtgcat
     3061 tggatcctgc gggcttgcgt gaagccgccg ccgcgatccg cgacgcgtgc acgagcatcg
     3121 gcttcttcta cgtcagcaat cacggcg
//
LOCUS       DATGBK010000985         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_335569, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000985 DATGBK010000000
VERSION     DATGBK010000985.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335569"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            283..774
                     /locus_tag="VKJ77_13740"
     CDS             283..774
                     /locus_tag="VKJ77_13740"
                     /inference="COORDINATES: protein motif:HMM:NF014672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE family protein"
                     /protein_id="HMC46379.1"
                     /translation="MTQDNFAAGGPVIEQFGKAHWIDEAVHLPDAHATYRIVFSVSVP
                     GKKPEAPNAGLERVARAVNLYSMSGVAPDRLHCVAVIHGEATSSVLNDGQYQTLDSRP
                     NPNTRLIAALQAAGVEVSVCAQALIGNGFSQDGLLPGVTRSLSALTTITVLQHDGYSL
                     MPL"
     gene            787..1197
                     /locus_tag="VKJ77_13745"
     CDS             787..1197
                     /locus_tag="VKJ77_13745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HMC46380.1"
                     /translation="MVLKLNIGPIALPLHALIFLLSVAVALAVASPCQSEMPVLARAQ
                     VDHPGVHLVFVNQGETSGHVDGYLESHDLRIRNSLLDPAHAVAKAVGAVGFPTTLFYD
                     ANGRLLATHLGPFSKATFTQALKQFYPIAVSKDD"
     gene            complement(1348..1749)
                     /locus_tag="VKJ77_13750"
     CDS             complement(1348..1749)
                     /locus_tag="VKJ77_13750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011800040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46381.1"
                     /translation="MDSNVGLAGDGVPLSDLLRRGELLKADCPSREVLKHVTSRWGVL
                     VLMVLLEQTCRFSDLRRRVDGVSEKMLAQTLQWLAADGFVIRTAYDEVPPHVDYRLTP
                     LGEEVARQVTSLADWIEVNLSRILSARMVDA"
     gene            1838..>2478
                     /locus_tag="VKJ77_13755"
     CDS             1838..>2478
                     /locus_tag="VKJ77_13755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012346469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HMC46382.1"
                     /translation="MIVVTGATGQLGRLVIKALLKTESASEIIAAVRSPEKAGDLAAL
                     GVQVRRADYNEPSTLDTAFKGADKLLLISSNELGRRAVQHRATIDAAKRSGVKLIGYT
                     SVLHADTSPLGLAGEHRETEEALRASGVPFVLLRNGWYTENYTSSLAPALEHGAILGS
                     AGDGKIASAARADYAEAAARAMTRDAQAGRVYELAGDTAYTLADLAAEVTRQSG"
BASE COUNT          509 a          785 c          687 g          497 t
ORIGIN      
        1 aggtcgactg gctggttgca gcagaatttg tcggcggcgg tgtggttggc ggtctgctgg
       61 gcactcaggc ggcaagccgc ctcgcaaaaa aacgtggcgc gctgaatcgt gttttctccg
      121 cgatgatcat ttcagtcgca gcctatatgc tttatcactc atggcaggcg cgatgacttt
      181 cgactgcttc cgtccaaggg ccttcgttct cccagacggc aagcgttgca ccgaagcgct
      241 gacgctggac caacccaata cttcactcga tgcaggcaac tcatgacgca agataacttc
      301 gcagccggag gtccggtcat cgagcaattc ggcaaagcgc attggatcga tgaggcggtt
      361 catctgccgg acgcgcacgc gacgtaccga atcgtcttct cggtcagcgt gccgggcaag
      421 aagcctgagg cccccaatgc aggactcgaa cgtgttgcgc gagcggtgaa cttgtacagc
      481 atgtccggcg tggcacccga tcgccttcac tgtgtcgccg ttatccacgg cgaagcaaca
      541 tccagtgttt tgaacgacgg gcaataccaa acgctcgatt cacgtccgaa cccgaatact
      601 cgtctcattg ccgcgctgca agccgcggga gttgaagtat ccgtttgcgc gcaggcgctg
      661 atcggcaacg gcttttccca ggacggactt ctccccggcg tgacgcgctc actttcagcg
      721 ctcacgacca ttactgtttt gcaacacgat ggatatagct tgatgccgct gtagacggca
      781 agaagcatgg tgttgaaatt gaatataggc ccgatcgcgt tgcccctgca cgcgctgatt
      841 ttcttgttga gtgtcgcggt agcgttggct gttgcgagtc cgtgccagtc cgagatgccg
      901 gttctcgcgc gcgcacaagt tgatcacccc ggtgtccatc tcgtgtttgt gaatcagggc
      961 gagacatcgg gtcatgtcga cggttacctt gagtcgcatg acctgcgtat ccgaaactcc
     1021 ctgcttgatc ccgcacacgc cgttgcgaaa gcagtgggcg ctgtaggctt tccgaccacc
     1081 cttttctacg acgcaaacgg ccggctgtta gcaacgcatc tcggcccctt ttctaaagct
     1141 acttttactc aggcgctcaa gcagttttat ccaattgctg tatcgaagga tgactgatca
     1201 actatctgtc tatcaatacg gcccgcgcag ctgaaaccgt cgccctgtta cccgacggcg
     1261 catccggtct ggctcagctc gtcaagcacc tggaggcccc cggcgacgcg atttcaaaaa
     1321 cgcggcagcc gatcggggcg ttcccttcta cgcgtccacc atccgcgcac tcaggatgcg
     1381 cgacagattc acctcgatcc agtccgccaa cgacgtgacc tggcgcgcga cttcctcccc
     1441 cagcggcgtc agccgatagt ccacatgcgg cggcacttcg tcatacgcag tgcgtatcac
     1501 aaacccatcg gccgccaacc actgcagcgt ctgcgcgagc atcttttcgc tcacgccatc
     1561 cacccttcgg cgcagatcgc tgaaacggca ggtctgctcc agcaacacca tcaacacgag
     1621 aacaccccat cggctggtga catgcttgag cacttcccgc gatgggcagt ccgccttcag
     1681 caactcaccg cgacgcaaca gatccgacaa cggcacgccg tcgccagcca aaccaacatt
     1741 tgagtccatg gatacttacc tcagcgtacg tacttacgaa aagttagttt atccgatacg
     1801 gtacggattc tgtcgcattc accccaggag tttgatcatg atcgtcgtta ccggagccac
     1861 cggccagctt ggccggcttg ttatcaaagc gttgttgaaa actgaatcgg caagcgaaat
     1921 tattgccgca gtacgcagtc cggagaaagc gggcgatctc gccgcgctgg gcgtgcaggt
     1981 ccggcgcgcc gactataacg aaccctccac gctcgacacc gccttcaagg gagcggacaa
     2041 gttgttactg atttcgtcga atgaacttgg ccggcgcgca gtccagcatc gcgccacaat
     2101 cgatgccgcg aagcgcagcg gcgtgaaatt gatcggctac accagcgtgc tgcacgccga
     2161 tacctccccg ctgggactag ccggtgaaca tcgcgagacg gaagaggcac tgcgcgcatc
     2221 gggcgtaccg ttcgttttgc tacgtaacgg ctggtacacc gaaaactaca ccagcagcct
     2281 agcccccgca ctcgagcacg gcgcgatcct cggcagcgcg ggcgacggca agattgcctc
     2341 ggcggcacgc gcggactatg cggaagctgc agcgcgggcg atgactcgcg acgcccaagc
     2401 gggacgcgtt tatgaactgg ccggcgatac cgcctacacc ctcgccgacc tcgctgccga
     2461 agtaacgcgg cagtccgg
//
LOCUS       DATGBK010000986         2522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_335591, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000986 DATGBK010000000
VERSION     DATGBK010000986.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335591"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..484)
                     /locus_tag="VKJ77_13760"
     CDS             complement(<1..484)
                     /locus_tag="VKJ77_13760"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HMC46383.1"
                     /translation="MVSSHSHLNKVTQRVIERSKPTRAAYLARIDNAQGHFPARGALS
                     CANLAHGFAGLEGQEKISIKAIREPNIGIVSSYNEMLSAHAPFKNYPDIIKQAAREAG
                     GVAQFAGGVPAMCDGVTQGNAGMELSLFSREVIAMSTAVALTHNMFDAALCLGICDKI
                     V"
     gene            786..1631
                     /locus_tag="VKJ77_13765"
     CDS             786..1631
                     /locus_tag="VKJ77_13765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HMC46384.1"
                     /translation="MLLSQVEAMREQLRPSERKLADYVMEAPREVLDLAMTDFATRAG
                     VSQPTIARFCRALGFSGFREFKIRLAQSIASDVPAPAVYRDVRADEPAAGVAAKVLDR
                     TIGALLQVRNSLSSDSVAAAIALLADARRIEFYGAGGSGIAALDVQHKFFRLGVPSVA
                     YSDPHTYTTSAALLGAGDVVVVISNTGRTRDILDAVKSALAGGAKVIAITHGNSPLAR
                     MASVGLFANVDEDTDIFSPMTSRVSHLAIGDILAVGVALARGPEFAERLAEAKGVLDR
                     RRVGN"
     gene            complement(1824..>2522)
                     /locus_tag="VKJ77_13770"
     CDS             complement(1824..>2522)
                     /locus_tag="VKJ77_13770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004533802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HMC46385.1"
                     /translation="QLYATNQDVAALQASVTNIASTGSTSIGINGTDGVAGTAGAAGA
                     TGADAIAMGDSASASGDHAVVIGGGATGTGDGTIAIGGNAGASGKDSIAIGNGATAPN
                     ANSVALGAGSTTDRDNSVSVGSADQQRQITNVAAGTQGTDAVNLNQMNSAVGGIARKA
                     YSGIAAATALTMIPDVDANKTLSIGIGGGTFQGYAATAIGGTARITQNIKVRVGAGWS
                     AAGTTVGAGASYQW"
BASE COUNT          501 a          729 c          752 g          540 t
ORIGIN      
        1 gaacgatctt gtcgcagatt ccgaggcaca aagcggcatc aaacatgttg tgggtcagcg
       61 cgaccgccgt gctcattgca ataacttcgc gtgagaacag cgagagttcc atgcccgcgt
      121 tgccttgcgt gacgccgtcg cacatggccg ggacgccgcc cgcaaattgc gccacgccgc
      181 cggcttcgcg cgccgcctgc ttgatgatgt ccgggtaatt cttgaacgga gcgtgcgctg
      241 aaagcatctc gttgtaagac gacacaatgc cgatgttcgg ctcgcgaatc gccttgatcg
      301 agatcttttc ctggccttca aggcctgcga aaccatgcgc gaggttggcg cacgacagcg
      361 ctccgcgggc ggggaaatgg ccttgcgcgt tgtcgatgcg tgcaagatag gccgcgcgcg
      421 tcggcttgct gcgctcgatc acgcgctggg tgactttgtt caggtgcgaa tgcgaggaaa
      481 ccatcgaaac tccttcgccg cggggcgggc gatcgggcga ttgacgcctg gttgattggt
      541 cgcgggagac ggggcgattt tgtttttgag acattcccgt gccacagcag caattctagt
      601 agaaaaacta catacattcc atctggaaaa ccctaattct gggtgaaagt cttctgtgat
      661 ggcttacttt ggatacctat tacggctgct gaatgggttg cgactgatgc ctagccttgt
      721 agtttttgta catttccgca aatcagctat agtccacgca tttccagcat aggatgagat
      781 tctcgatgtt gctgtcccaa gtcgaagcaa tgcgtgagca gttgcgcccg tccgagcgca
      841 agcttgccga ttacgtgatg gaggcgccgc gcgaggttct cgacctcgcg atgaccgact
      901 tcgccacgcg ggccggtgtg agccaaccca ccattgcccg attttgccgg gcgctcggat
      961 tttcgggctt tcgggaattc aagatccggc tggcccaaag cattgcgtcg gatgtccccg
     1021 cgccggcggt gtatcgcgac gtacgtgccg acgaacccgc cgcgggcgtc gcggcgaaag
     1081 tgcttgatag gactatcggc gcgttgctgc aggtgcgcaa tagcttgtcg tcggatagcg
     1141 tggctgcggc aattgccctg ctcgccgatg cacggcgcat cgagttttat ggcgcgggtg
     1201 gttcgggcat cgccgcgctg gatgtgcagc acaagttctt caggctgggc gtgccgagtg
     1261 ttgcgtattc cgatccgcat acgtacacga cgtcggcagc gttgttgggt gcgggcgatg
     1321 tcgtggtggt gatttcgaat acgggccgca cgcgcgacat tctggacgcg gtgaaatcgg
     1381 cgctggccgg cggggcgaag gtcatcgcga tcacgcacgg gaattcgccg ttggcgcgca
     1441 tggcgagcgt gggcttgttc gctaacgtag atgaagatac ggacattttt tcaccgatga
     1501 catcgcgtgt atcgcatctg gctatcggcg atattctggc ggtcggcgtg gcgttggcgc
     1561 gtggacctga gttcgcggaa aggctggccg aggctaaggg tgtattggac aggcggcgcg
     1621 tggggaatta acgcacgctg actttcgatg gggcaataaa aaagcgagcg cttccgaaga
     1681 agagcccgct ttaggtacag ctaaaggtac aacaaggtac atctacagct acaacaagta
     1741 catttacaac aaagaagtta caagaccaat ccttcgagaa acccggctct ttcgaaccgg
     1801 actcctctca gatcagactg cgattaccac tggtacgaag caccagcacc aaccgtcgta
     1861 ccagctgccg accaacccgc gcccacgcgc accttgatgt tctgcgtgat acgagccgta
     1921 ccgccaatgg ccgttgctgc atagccctgg aacgtaccgc caccaatacc gatcgacaac
     1981 gtcttgttcg cgtcaacgtc cgggatcatc gtcagcgcag tggctgccgc aataccgctg
     2041 tacgccttac gagcgatacc acccactgcc gagttcatct ggttcaggtt gactgcatcc
     2101 gtaccttgcg tacccgctgc cacgttcgtg atctgacgtt gttggtctgc agagccgacc
     2161 gaaacgctgt tgtcacgatc cgttgtggaa ccagcaccca acgcaaccga attggcattc
     2221 ggagccgtag caccgttacc gatagcgatc gagtccttgc ccgacgcacc agcgttgccg
     2281 ccgatagcga tcgtgccgtc acccgtaccc gtcgcgccgc caccaatcac aactgcgtga
     2341 tcgccagaag cagaagcgct gtcgcccatg gcgattgcgt cagcaccggt ggcgcctgct
     2401 gcacctgctg tgcctgcaac accatcagta ccgttgatgc caatactcgt cgaacccgtc
     2461 gatgcgatgt tcgtcactga agcctgaagc gctgcaacat cctggttcgt agcgtacaac
     2521 tg
//
LOCUS       DATGBK010000987         2868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289779, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000987 DATGBK010000000
VERSION     DATGBK010000987.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289779"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..474
                     /locus_tag="VKJ77_13775"
     CDS             <1..474
                     /locus_tag="VKJ77_13775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006495620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC46386.1"
                     /translation="TGGIVNQLFGLFGLGPYKLEYTTFAIVIALVHVMLPFMVIPVWT
                     SLQKLDPQVENAALSLMASPATTLRRIVLPQIAPGILSGSLMVFGLSASAFAIPGLLG
                     GRRLKVAATAVYDEFLGSLNWPLGATIAILLLIANLVIMITYYRVLERRYSRSLG"
     gene            493..1287
                     /locus_tag="VKJ77_13780"
     CDS             493..1287
                     /locus_tag="VKJ77_13780"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46387.1"
                     /translation="MRKNGLVALSFHTLVILFVLAPLVIIVLVAFTPDQTLTLPTHGF
                     SLRWFRAILDYPDFISAFFNSIKLAFASATLSLALALPAALAIGRERFPGREFLNGLF
                     LSPLVIPSLVLGIAFLRFFAMIGATGSFTWLVAAHMIIITPFVMRLVLASVSGMDRSI
                     EHAAQSLGADRWTAFRRITLPMILPGITGGWLLAFINSFDELTMSIFVTSPQTITLPV
                     RMYMYATESIDPMMASVSALVIFVTAGAMIVLDRVYGLNRILIGSH"
     gene            1320..1673
                     /locus_tag="VKJ77_13785"
     CDS             1320..1673
                     /locus_tag="VKJ77_13785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011881408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC46388.1"
                     /translation="MTNLPKATSAGQPQSVADAAPQFVRLTEAHRKQVGLTLDGVAIT
                     ALTGDTVLSAILLHTRRVRDTEFSGEPRAGFCLMGACQDCWVQLEEGTRIRACSTFVK
                     DGMRVLTRPAGAIGA"
     gene            1697..>2868
                     /locus_tag="VKJ77_13790"
     CDS             1697..>2868
                     /locus_tag="VKJ77_13790"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HMC46389.1"
                     /translation="MHRVVIVGAGPAGVRAAETLVAAGVVPVMIDEAPRAGGQIYRQP
                     PADAGFARSKRTLYGMEAGKADAVHSTMAGLLSKIDYRPDTLVWGCGAAQLDTLHDGR
                     QRTVPYSHLLIATGATDRVLPFPGWTLPGVYTLGAAQIALKSQGCAIGRRVVFAGTGP
                     LLYLVAYQYAKAGAQVEAVLDTNPFSRQLAATPRLLRQPSTFAKGLYYVGWLAARGVR
                     IERGVTLVRATGDKAVQAMTYRDGEQELTIPCDAVGFGYGLRSETQLADLAGCRFCFD
                     ALNRAWLPERDSAGRSSVPGVYLAGDGAGIAGADAAELAGRRAALAMLEDLGHRAGSA
                     NVHAQAAKLDRQLANIAEFRIGLEQAFAPPSGCAPHWPDDMTVCRCEEIDAGTLRR"
BASE COUNT          449 a          854 c          950 g          615 t
ORIGIN      
        1 acgggcggta tcgtgaatca gctcttcggc ctcttcgggc tgggtccgta caagctggag
       61 tacaccacct tcgcgatcgt gatcgcgctc gttcacgtca tgctgccgtt catggtgatt
      121 cccgtctgga cctcgctgca gaagctcgat ccacaggttg aaaacgcggc gctttcgctg
      181 atggcgtcgc cggcaaccac gttgcggcgc atcgtgttgc cgcagatcgc gcccggcatt
      241 ttgtcgggca gcttgatggt gttcggcttg tcagcgagcg cgtttgcgat tcccggcctg
      301 ctcggcggcc gtcgcctgaa agtagcggcc accgctgtct acgatgaatt cctcggctcg
      361 ctcaactggc cgctcggcgc gaccatcgcg atcctgttgc tgatcgcgaa cctcgtgatc
      421 atgatcacgt attaccgggt gctggagcgt cgttactcca gaagcctcgg ttaaggaaag
      481 gagaccgctg caatgcgaaa gaacggcctc gttgccctga gtttccacac gctcgtgatc
      541 ttgttcgtgc tggcgccgct tgtgatcatc gtgctggttg cgttcacgcc ggaccagacg
      601 ctgacgctgc ccacgcacgg cttttcgctg cgctggttcc gcgcgattct tgattacccc
      661 gatttcatct cggcgttttt caacagtatc aagctggcgt ttgcgtcggc tacgctgtcg
      721 ctcgcactgg ctttaccggc ggcgcttgct atcggccgtg aacgttttcc ggggcgtgaa
      781 ttcctcaatg gcctgttcct ctcgccgctg gtgattccaa gcctcgtgct gggcatcgca
      841 ttcctgcgct ttttcgcgat gatcggcgcg accggctcgt tcacgtggct cgtcgcggcg
      901 cacatgatca tcatcacgcc gttcgtgatg cggctggtgc tggcctcggt gagcggcatg
      961 gatcgcagca tcgagcatgc ggcgcagtct ttgggagcgg atcgatggac ggcgtttcgc
     1021 cgcatcacgc tgccgatgat cctgcccggc atcaccggcg gatggttgct tgcgttcatc
     1081 aatagcttcg atgagctaac catgtcgatc ttcgtgactt cgccgcagac cattacgttg
     1141 ccggtgcgca tgtacatgta cgcgacggaa tcgatcgacc cgatgatggc gtccgtatcc
     1201 gcactcgtga tcttcgtgac ggccggggcg atgatcgtgc tcgaccgcgt gtatggactg
     1261 aaccggatcc tgatcggttc gcattgattc gcccgacgcc tacgacttca ctctacgcga
     1321 tgacaaacct ccccaaggca acatcggccg gccagccgca gagcgtggcc gatgccgcgc
     1381 cgcaattcgt gcgtcttacg gaagcgcatc gcaagcaggt ggggctgacg ctggacggcg
     1441 tcgctatcac ggccctgact ggcgatactg tattgagcgc catcctgctg cacacgcggc
     1501 gcgtgcgtga caccgagttc agcggtgaac cacgcgcggg attctgtctg atgggcgcgt
     1561 gtcaggactg ctgggtacaa ctggaagagg gcacaaggat tagggcgtgc tcgaccttcg
     1621 tcaaggacgg catgcgggtg ctgacccgac ctgcgggagc gatcggagcg tgagcgcggt
     1681 tatcgataaa aacagcatgc atcgggtcgt gattgtcggc gcaggaccgg ctggcgtgcg
     1741 cgcggctgag acgctggtgg cggcgggcgt agtgccggtc atgatcgatg aagcgccgcg
     1801 tgcgggtggc cagatctatc ggcaaccgcc ggcggatgcg ggttttgccc gcagcaaacg
     1861 cacgctttat ggcatggaag caggcaaggc cgacgcggtg cactcaacca tggccgggtt
     1921 gctttcaaag atcgactatc gacctgacac gctggtgtgg ggatgcggcg ctgcgcagct
     1981 cgataccttg catgacggac gccagcgcac ggtgccctat tcgcacttgc tgattgcgac
     2041 cggcgcgaca gatcgcgtac tgccgtttcc gggctggacg ctgccgggcg tctacaccct
     2101 cggtgcggcg cagattgcgc tgaaatcgca gggctgcgcg attgggcgtc gcgtggtgtt
     2161 cgcgggaacg ggcccgttgc tttatctcgt ggcgtatcaa tacgcgaagg cgggcgcgca
     2221 ggttgaggcg gtgctcgata ccaatccgtt ctcgcgtcag ttggccgcga cgccgcgttt
     2281 gttgcggcag ccgtccactt ttgcgaaggg gctgtattac gtcggctggc tggcggcgcg
     2341 tggggttcgt atcgaacgtg gcgtgacgct cgtgcgcgcg acgggcgata aagccgtgca
     2401 ggccatgacc tatcgcgatg gcgagcaaga gctgaccatt ccctgcgatg ccgtcggctt
     2461 cggctatggc ctgcgttccg aaacgcagct tgcggatctg gcaggttgcc gcttctgctt
     2521 cgatgcgctc aatcgcgcgt ggctgccgga gcgcgattca gccggtcgca gttctgtgcc
     2581 gggcgtttat ctcgctggcg atggcgcagg tatcgcgggc gcggatgctg cggaactggc
     2641 tggccgtcga gcggcgctgg caatgctgga agacctcggg catcgggccg gaagcgctaa
     2701 cgttcacgct caggctgcga agctggaccg gcaactggcg aacatcgccg aatttcgtat
     2761 tggcttggag caggcgtttg cgccgccctc cggctgcgcg ccgcactggc cggatgacat
     2821 gacggtgtgt cgctgcgaag agatcgatgc cggcacgctg cgccgttg
//
LOCUS       DATGBK010000988         2442 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289787, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000988 DATGBK010000000
VERSION     DATGBK010000988.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289787"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..984
                     /locus_tag="VKJ77_13795"
     CDS             <1..984
                     /locus_tag="VKJ77_13795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006406581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46390.1"
                     /translation="EGKMRLDWQGAGLIAIALGSLQLFVEMLPKHGLSAESLMLLVVS
                     VASGFALWKWERRCDYAILPVDMFRNKSLSALFTLAILGGFSMFSLLFYAPLLFQGGF
                     GMSPKDAGLMITPLVVFITIGSIVNGRIVTRVKNPNAMLFVGFALLAVACLGVVIATR
                     SMPRPLLMVFMVLGGMGLGFVMPNLTVFAQLTAGREHLGIATALLQSLRMIGGMIGTA
                     LTGTLIGHLYASGVQLALDKDSATHWLGDLSDPQILINHDAQTTLLSQLAAAGHNGAM
                     LLESARESLVAAIHIGLAVAAVVAVLAVWQARRVPTVRLKGAKIEPTIVAE"
     gene            1095..1583
                     /locus_tag="VKJ77_13800"
     CDS             1095..1583
                     /locus_tag="VKJ77_13800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HMC46391.1"
                     /translation="MDETERIAFIQQFGRTYRTFMQAFESQVGHPMPRWRILLALHDH
                     AGELSQKRMVERLRVDPGALTRQLKTLEALGWIARSVDQRDNRVSNVILTDAGRAVTE
                     AGMPRRNAFVHETLSTLPDDAVTALSGALRALEQRIQEVAAGTAEVNGPGELGNSVSD
                     DA"
     gene            complement(1580..>2442)
                     /locus_tag="VKJ77_13805"
     CDS             complement(1580..>2442)
                     /locus_tag="VKJ77_13805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid deaminase"
                     /protein_id="HMC46392.1"
                     /translation="NFEFHCLVDSADNVDQLGTFFSDVNKQVNVLLELGVAGGRTGIR
                     DDAQRDAVLAAIARWPDAVKLTGVELYEGVLQDESKVRAFLQNAVDVTRALVADGKIE
                     RKPAILSGAGSAWYDVVADEFAKANSDAIEVILRPGCYLTHDVGVYKKAQNEIFARNP
                     IAKKMGEGLKPALQLWAYVQSIPEPDRVIIGLGKRDAAFDAGMPEPARHFRPGTQWPR
                     DIKTDEGWEIFGMMDQHAYLRIKPGDDIKVGDMIAFDISHPCLTFDKWRQILVVDTKY
                     RVKEVIETSF"
BASE COUNT          440 a          739 c          765 g          498 t
ORIGIN      
        1 gaaggcaaga tgcgtctgga ctggcaaggc gcgggcctga tcgcgattgc gctcggttcg
       61 ctgcaattgt ttgtcgaaat gttgccgaag cacggcttgt cggcggagtc gctgatgttg
      121 ctggtcgtga gcgttgcgtc cggtttcgcg ctctggaagt gggaacggcg ctgcgactac
      181 gccattcttc ccgtcgatat gttccgcaac aagagcctgt ccgcgctctt cacactggca
      241 attctcggcg gtttctcgat gttttcgctg ctgttttacg cgccgctgct gttccagggt
      301 ggttttggga tgtcgccgaa agacgccggg ctgatgatca cgccgctggt ggtgttcatt
      361 acgatcggca gtattgtgaa cggccggatc gtgacacgcg tgaagaatcc caacgcgatg
      421 ctgttcgtcg gtttcgcgct gctcgcggtg gcgtgtctcg gcgtggtgat cgccacgcgc
      481 tcgatgccgc gtccgctgtt gatggtgttc atggtgctgg gcgggatggg gctgggcttt
      541 gtcatgccga acctgaccgt gttcgcgcag ttgaccgcgg gacgcgaaca tctggggatt
      601 gcgacggcgc tgctgcagtc gctgcgcatg attggcggga tgattggcac tgcattgacc
      661 ggtacgctga tcggccatct gtatgcaagc ggagtgcagc tcgcactcga caaggacagt
      721 gccactcact ggctcgggga cctgagcgat ccgcagattc tcatcaacca tgacgcgcaa
      781 accacgctgc tttcgcaact cgcagctgcg ggtcataacg gcgcgatgct gcttgaatcg
      841 gctcgcgagt cgctggttgc agccattcac attggcctgg cggttgcggc ggttgtcgcg
      901 gtgctggctg tgtggcaagc gcgtcgcgta ccgacggtgc gcttgaaggg cgcgaagatc
      961 gaaccgacga tagtggccga atgagttcga taacagcaag caagcacgcg aagagcacca
     1021 cgaccacgaa cgacgcgcaa acgcgcagcg ttaaagcaat cagcactgaa gcagtcagcc
     1081 gggaaccact cagcatggac gagacggaac gtatcgcctt catacagcag tttgggcgca
     1141 cttatcgaac gttcatgcag gcgttcgagt cgcaggtcgg ccatccaatg ccgcgttggc
     1201 gcatcctgct cgcgctgcac gatcatgcgg gcgagttgtc gcaaaagcgt atggtggagc
     1261 gactgcgcgt ggacccgggc gcgctcacgc ggcagttgaa gacgctggag gcgctgggct
     1321 ggattgcgcg cagtgtcgac cagcgcgaca accgggtatc gaacgtcatc ctgaccgatg
     1381 ccggccgcgc cgtgactgaa gccggcatgc cgcgccgcaa tgccttcgtt cacgagacgc
     1441 tgtcgacgct tcccgacgac gccgtcaccg cgctctccgg cgcgctgcgc gcgctcgagc
     1501 agcgcatcca ggaggttgcc gccggaaccg ccgaagtgaa cggcccgggc gagctcggca
     1561 acagcgtctc cgacgacgcc tagaacgacg tctcgatcac ttccttcacg cgatattttg
     1621 tatcgacgac cagaatctgg cgccatttgt cgaaggtgag gcaggggtgc gagatgtcga
     1681 acgcaatcat gtcgccgacc ttgatgtcgt cgcccggctt gatccgcagg taggcatgct
     1741 gatccatcat gccgaagatc tcccagcctt cgtccgtctt gatgtcgcgc ggccattgcg
     1801 tgccgggacg gaagtgacga gccggttcgg gcatgccggc atcgaaggcg gcatcgcgtt
     1861 ttcccaggcc aatgatcacg cgatccggtt ccggaatcga ctgcacatag gcccacaatt
     1921 gcagcgccgg tttcagccct tcgcccattt tcttcgcaat cgggttgcgc gcgaaaatct
     1981 cgttctgcgc tttcttgtac acacccacgt cgtgcgtcag ataacagccc ggacgcagga
     2041 tcacttcgat tgcatcgcta ttcgctttcg cgaattcatc ggcgacgacg tcgtaccacg
     2101 ccgaccccgc gcccgacaga atggccggct tgcgttcgat cttgccgtcg gcgaccagcg
     2161 cgcgcgtcac gtccaccgcg ttctgtagaa aagcccgtac cttcgattca tcctgtagca
     2221 cgccctcgta caactcgacg ccggtgagct tcacggcatc gggccagcgt gcaatggcgg
     2281 ccagcaccgc gtcgcgttgc gcgtcgtcgc gaatacccgt tcggccgccc gccacgccca
     2341 gttccagcag aacgttcacc tgcttgttca catcgctgaa aaacgtgccg agctggtcaa
     2401 cgttatcggc ggaatcgacg aggcaatgga actcaaaatt gg
//
LOCUS       DATGBK010000989         2094 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_197351, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000989 DATGBK010000000
VERSION     DATGBK010000989.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197351"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..>2094
                     /locus_tag="VKJ77_13810"
     CDS             22..>2094
                     /locus_tag="VKJ77_13810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006491304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Orn/Lys/Arg decarboxylase N-terminal
                     domain-containing protein"
                     /protein_id="HMC46393.1"
                     /translation="MKFRFPVVIIDEDFRSENISGSGIRALAEAIQGEGVEVLGLTSY
                     GDLTSFAQQSSRASCFILSIDDDELLPYVDNVVVAEGDTPELASAIVALRAFVQAVRR
                     RNADIPIFLYGETRTSRHLPNDILRELHGFIHMFEDTPEFVARHIIREAKVYLDALAP
                     PFFKELVQYAEEGSYSWHCPGHSGGVAFLKNPLGQMFHQFFGENMLRADVCNAVDELG
                     QLLDHTGPIAASERNAARIFSADHLFFVTNGTSTSNKIVWHATVAPGDIVLVDRNCHK
                     SILHAITMTGAIPVFLTPTRNHFGIIGPIPRDEFKPENIRKKIEANPFTREALAKNPN
                     AKPRILTITQSTYDGVIYNVEMIKDLLGDLLDTLHFDEAWLPHAEFHEFYQDMHAIGA
                     GRPRTGALVFATHSTHKLLAGISQASQIVVQDSENSTFDKHRFNEAYHMHTSTSPQYA
                     IIASCDVAAAMMEPPGGTALVEESIAEALDFRRAMRKVDDEYGDEWFFKVWGPEALAE
                     EGIGDREEWVLKPNDRWHGFGALAEGFNMLDPIKATIITPGLDVDGEFGETGIPAAIV
                     TKYLAEHGIIVEKTGLYSFFIMFTIGITKGRWNSMVTELQQFKDDYDNNQPLWRVLPD
                     FIALHPSYERMGLKDLCEQIHSVYRANNIARLTTEMYLSSMEPAMKPSDAYAKLVHRE
                     IDRVPIDEL"
BASE COUNT          426 a          612 c          640 g          416 t
ORIGIN      
        1 ttccatttgg agattcgccg catgaagttc cgttttcccg tcgtcatcat cgacgaagat
       61 tttcgctccg agaatatctc gggttccggc atccgagcgc ttgctgaggc gatccagggt
      121 gaaggcgtcg aggtgctcgg actgacgagt tacggcgacc tgacgtcgtt cgcgcagcaa
      181 tcgagccgcg cgtcgtgttt catcctgtcg atcgatgacg acgaattgct gccgtatgta
      241 gacaacgtcg tggtggccga aggcgatacg ccggagctgg cctccgccat cgtcgcgttg
      301 cgcgcgttcg tgcaagcagt gcgacgacgc aacgcggata tcccgatttt tctgtacggc
      361 gaaacgcgca cgtcgcggca cttgcccaac gacatcctgc gcgagctgca cggtttcatt
      421 cacatgttcg aggacacgcc ggagttcgtc gcgcgccaca ttatccgcga ggcgaaggtt
      481 tacctcgacg cgctggcgcc accgttcttc aaggagctcg tgcagtacgc ggaagagggt
      541 tcgtactcgt ggcattgccc ggggcattcg ggcggcgtgg cgttcctgaa gaacccgctg
      601 gggcagatgt tccaccagtt cttcggcgag aacatgttgc gggcggacgt ctgcaatgcc
      661 gtcgatgaac tcggccagtt gcttgatcac accgggccga tcgcggcgtc cgagcgcaat
      721 gcggcgcgca ttttcagcgc ggaccatttg ttcttcgtga ccaacggcac gtcgacgtcg
      781 aacaagattg tctggcacgc gaccgttgca ccgggcgata tcgtcctggt cgaccgcaat
      841 tgccacaagt cgatcctgca cgcgatcacc atgacgggcg cgatccccgt tttcctgacg
      901 ccgacacgca atcacttcgg catcatcgga ccgatcccgc gcgacgaatt caagccggaa
      961 aatattcgca agaagattga agcgaatccg ttcacgcgcg aggcgctggc gaaaaatccg
     1021 aacgcaaagc cgcgcatcct gaccatcacg cagagtacct atgacggcgt gatctataac
     1081 gtcgagatga tcaaggacct gcttggcgac ctgctcgaca cgcttcactt cgacgaagcc
     1141 tggttgccgc atgccgagtt ccacgagttt tatcaggaca tgcacgccat cggcgcgggc
     1201 cgtccgcgta cgggcgcgct cgtgttcgcc acgcactcca cgcacaagct cctcgcgggg
     1261 atttcgcagg cgtcgcagat cgtggtccag gactccgaga acagcacgtt cgacaagcat
     1321 cggttcaacg aggcgtacca catgcacacg tccacgagcc cgcagtacgc gatcatcgcg
     1381 tcctgcgacg tggccgcagc catgatggag ccgccgggcg gcacggcgct ggtggaggag
     1441 tcgattgcgg aagcgctcga tttccgccgc gccatgcgca aggtcgacga cgaatacggc
     1501 gacgaatggt tcttcaaggt gtggggaccg gaagcgctcg cggaagaggg cataggcgat
     1561 cgtgaggaat gggtgttgaa accgaatgac cgctggcacg gtttcggggc gcttgccgaa
     1621 ggcttcaaca tgctcgatcc catcaaggcg accatcatca cgcccggact cgacgtggac
     1681 ggcgagtttg gcgagaccgg gattcctgct gccatcgtga cgaaatatct ggcggagcac
     1741 gggattatcg tggagaagac cgggctgtat tcgttcttca tcatgttcac gatcggcatt
     1801 acgaaaggcc gctggaattc gatggtcacc gagttgcagc agttcaagga cgactacgac
     1861 aacaaccagc ctttgtggcg ggtgttgccg gacttcattg cgctgcatcc gtcgtatgag
     1921 cgcatgggat tgaaggatct ttgcgagcag atccatagcg tttatcgggc caacaatatc
     1981 gctcggctga ccaccgagat gtatctgtcc agcatggaac cggccatgaa gccgtcagac
     2041 gcgtatgcaa agctggtgca tcgggagatc gatcgggtac ctatcgatga actc
//
LOCUS       DATGBK010000990         1663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127337, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000990 DATGBK010000000
VERSION     DATGBK010000990.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127337"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1561
                     /locus_tag="VKJ77_13815"
     CDS             <1..1561
                     /locus_tag="VKJ77_13815"
                     /inference="COORDINATES: protein motif:HMM:NF014281.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC46394.1"
                     /translation="PAIKTMLKNFTIRRGLTITIAGYTLALVAVLLAAALCLRQSNQA
                     LEQMVATDTVAITHLKTSSQRLLHVRLALGSFETLFMLGKAGDDLLPNARKTLKASDT
                     EFDAYLAKPRDPQEEPLVQAAKAARDALIAKALNLEFDALAQNDFTTFRTLQVQTADS
                     LYATYDHAMSAVEAFQIAHQQDRYAQAQAQFHTMATAAAVVAALALVLGFIARAALSA
                     AVMKPIESAIHHFEQIAAGDLTASIDASRDNEMGRLFAALGKMQQGLVGTVQQVRGGT
                     GAISHGAREIAAGNIDLSQRTEEQAASLQQTASSMEQLTATVRQNADNARQASELAID
                     ASATAVRGGTVVGKVVHTMDDIATSSTRIADIIGVIEGIAFQTNILALNAAVEAARAG
                     EQGRGFAVVAGEVRNLAQRSAGAAKEIKELINASAGKVQAGNVLAGQAGQTMSEVVAA
                     VKRVSDIISAISAASNEQTGGIEQINRAVAQMDEVTQQNAALVEEAAAAAASLEQQAE
                     KLDVAVAVFRV"
BASE COUNT          334 a          479 c          571 g          279 t
ORIGIN      
        1 gcccgcgatc aagaccatgc tcaagaactt tacgattcgc cgcggactca cgattaccat
       61 cgccggctac acgctcgcgc tcgtggcggt gctgcttgca gccgcattgt gcctgcgcca
      121 gagcaaccag gcgctggagc agatggtcgc cacggacacc gtggccatta cgcatctcaa
      181 gacgagttcg cagcggctgc tgcacgtgcg ccttgcgctc ggcagcttcg agacgctgtt
      241 catgctcggc aaggcgggcg acgacctgct gcccaacgcg cgcaagacgc tgaaagcgag
      301 cgataccgag ttcgatgcgt acctcgccaa accgcgtgac ccgcaggaag agccgcttgt
      361 gcaagccgcc aaggccgcgc gcgacgcgtt gattgcgaag gcgctcaacc ttgaattcga
      421 tgcgctcgcg cagaacgact tcaccacgtt ccgcacgctc caggttcaga cggcggacag
      481 tttatacgcc acctacgatc acgcgatgtc cgcggtggaa gcgttccaga ttgcgcatca
      541 gcaagaccgt tatgcgcagg cacaggctca gttccacacg atggcgacag cggccgcggt
      601 cgttgcggcg ttggcgctgg tgctggggtt catcgcgcgg gctgcgttga gcgcagcggt
      661 gatgaagccg atcgaatcgg cgattcatca cttcgaacag attgccgcgg gcgatctgac
      721 ggcaagcatc gatgcctcgc gcgacaacga aatgggccgc ttgtttgcag cgctcggcaa
      781 gatgcagcag ggacttgtgg ggacggtgca gcaggttcgc ggcggcacgg gcgcaatctc
      841 gcacggtgcg cgtgagattg cggcgggcaa catcgatttg tcgcaacgca cggaagaaca
      901 ggcggcttca ttgcagcaaa cagcgtcgag catggagcag ttgacggcca ctgtccgcca
      961 gaacgccgac aacgcgcggc aagctagcga gctggcgatc gatgcatcgg caaccgctgt
     1021 gcgtggcggc acggtcgtgg gcaaggtcgt gcatacgatg gacgacatcg cgacgagttc
     1081 cacgcggatt gcggacatca tcggcgtgat cgagggcatt gcgttccaga cgaatattct
     1141 cgcgctgaac gcggctgtgg aagccgcgcg tgcgggtgag caagggcgtg gttttgcggt
     1201 ggttgcgggc gaagtgcgca acctcgcgca acgcagcgcc ggggccgcga aagagatcaa
     1261 ggagttgatc aatgcatcgg cgggcaaggt gcaggccggc aacgtgctgg cgggacaagc
     1321 gggccagacc atgagcgaag tggtcgcggc cgtgaagcgg gtgtcggaca tcatcagcgc
     1381 gatcagcgcg gcatcgaacg agcagaccgg tggtattgaa cagatcaacc gcgcggtcgc
     1441 gcagatggat gaggtgacac agcagaatgc ggcgctggtg gaggaagcgg ctgcggctgc
     1501 ggcatcgctt gaacagcaag cggagaagct ggatgtcgcg gtggcggtgt ttcgggttta
     1561 gggggtttca ttcccctgcg ggaatcgccg caaacacctt cgagtagtac gcactccctt
     1621 ggcgcatgtg cgattcaaat gcgaacccac ggctgagcat gtc
//
LOCUS       DATGBK010000991         2569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127339, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000991 DATGBK010000000
VERSION     DATGBK010000991.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127339"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /locus_tag="VKJ77_13820"
     CDS             complement(<1..417)
                     /locus_tag="VKJ77_13820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC46395.1"
                     /translation="MTKETSALTASTFYSGSDHAVLMLHGLSSSPLEMRHLARYLNSE
                     GLTTCAPNLHGYSAGTPELRMEAWVAAAVREFDALSERYSRVSVCGLSMGAALALALV
                     RERPSAQAIVLLSVTLDYDGWAMPWYRFLLGWAYYTP"
     gene            complement(419..1150)
                     /locus_tag="VKJ77_13825"
     CDS             complement(419..1150)
                     /locus_tag="VKJ77_13825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HMC46396.1"
                     /translation="MTIQNARRWAPRGKRVWLMSALALCVASGVRLALHPFLGPVMPG
                     VAFCIAAAMVEYFFGLIPSLTVMLLGLGIADFLFVPPYGQIAVIDRADIMLAISYPLV
                     TLSTITLIERLRRSQFSTELIAAVALSRYEMLLRADNERTLSRRAVDETHRLVRHLPH
                     YHDAIILLQAVDRNAAQGAKEMAPGRLFANAHPDDIERLHRGLQPGRHRVRISSGDGV
                     HRLVECICERFTTHAGEFLILRRVD"
     gene            1445..2107
                     /locus_tag="VKJ77_13830"
     CDS             1445..2107
                     /locus_tag="VKJ77_13830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC46397.1"
                     /translation="MRLLLVEDDEMIAETVLDSMRRLGYAIDWAADGRAAELSLGNGV
                     YDLVLLDLGLPKRDGIQVLNTYRKAGGAASVIILTARDAVDDRVRGLDAGADDYLMKP
                     FDLDELAARVRAALRRRTGQKQPVYTHGELALDPASHEATKAGVPLPLVPREFALLQV
                     LIEEPTRVFRRAELEEKLYGWGEEVGSNTIEVHVHSLRRKIGAEQILTIRGVGYRLKG
                     LE"
     gene            2104..>2569
                     /locus_tag="VKJ77_13835"
     CDS             2104..>2569
                     /locus_tag="VKJ77_13835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase N-terminal
                     domain-containing protein"
                     /protein_id="HMC46398.1"
                     /translation="MTSIRRWLLGWLIFGLAATSLAAGYGIFHTARREAGELFDYELR
                     TVALSLPANIATADAAERASHDFNGIADDRIAIDIWDKQGKLVYHSLKEPALPRIAEG
                     FRSIERDEYRWRVFGLQQPERYIQVAQPFSVREDLALRLAWRTLWPLALVVPV"
BASE COUNT          519 a          742 c          826 g          482 t
ORIGIN      
        1 cggcgtgtaa tacgcccagc cgagcaggaa gcgataccac ggcatcgccc aaccgtcgta
       61 gtcgagcgtg acagacagca gcacgatagc ctgcgcgctg ggccgctcac gcacgagcgc
      121 cagtgcgagc gctgcgccca tcgaaaggcc gcacacggag actcgcgagt aacgctcgct
      181 cagcgcatcg aattccctga ccgcggccgc aacccatgct tccatgcgca gttccggcgt
      241 gcctgcgctg taaccgtgga ggttgggcgc acaggtggtg agcccttcgc tgttcaggta
      301 gcgcgcgaga tggcgcattt cgagcggtga gctggacagg ccgtgcagca tcaggactgc
      361 atggtcgctg ccggagtaga aggtcgacgc ggtcaacgcg gaggtttcct tggtcacgct
      421 aatcaaccct gcgcaagatc agaaactcac cggcgtgggt ggtaaagcgc tcacaaatgc
      481 attccacgag tctgtgcaca ccgtcgcccg aactgatgcg cacgcgatgc cgccccggtt
      541 gcaaaccacg gtgtagcctt tcgatatcgt caggatgcgc attggcaaaa agccgccccg
      601 gcgccatttc cttggcgcct tgcgccgcgt tgcgatcgac cgcctgcagc aagatgatgg
      661 cgtcgtggta atgcggaaga tgccgcacca gccgatgcgt ttcgtccacc gcccggcgcg
      721 acagcgtacg ttcgttgtcg gcgcgcagca gcatttcgta gcgcgagagc gccactgctg
      781 cgatcagttc tgtactgaat tgcgagcgcc gcagcctttc aatgagggtg atggtggaca
      841 gcgtgacaag cgggtatgaa atcgcgagca tgatgtcggc gcgatcgatg actgcaatct
      901 ggccgtaagg tggcacaaac aggaaatcgg caatgcccag tccaagtagc attaccgtca
      961 gcgaagggat gaggccaaag aagtattcga ccatggccgc cgctatgcag aaggcgacgc
     1021 ccggcatgac cgggcccagg aatggatgca aggcgagccg gaccccgctt gcgacgcaaa
     1081 gcgcaagcgc gctcattaac cacactcgct tgcctcgcgg cgcccagcgg cgggcgtttt
     1141 gaatagtcat taatgcggtt tgtgtcagcg agatattcgt acggagcatg gattattaca
     1201 cacagttaca ggcagtgtga cgtgcacatg cttaagcgat gcttaaagag tttccagtgc
     1261 cggtcatgtc gcaaaagctg ccggtttcca gataaggaat gttaaggatg actgtgaatt
     1321 ggcaagattt gtcgaaggac cgattgattc ccaggacgcc gatgcttaag gaacgcttaa
     1381 gcacctgccg cggacaattc atgctcgata cttgtaattg ttggaaagac ctggagactg
     1441 cgcgatgcgg ctattactgg tggaagacga cgagatgatt gccgagaccg tgctcgactc
     1501 catgcgccgg ctgggttatg caatcgactg ggcggcggac ggacgcgccg ctgagctgtc
     1561 gcttggcaat ggggtgtacg acctcgtgct gctcgacctc ggtttgccaa aacgcgacgg
     1621 catccaggtg ttgaacacct accgcaaggc aggcggtgcg gcgtcagtca tcatcctgac
     1681 cgcacgcgat gccgtggatg accgcgttcg tgggctggat gcgggcgccg acgattacct
     1741 catgaaaccc ttcgatctcg acgagctcgc cgcacgcgtg cgcgcggcgc tgcgacgacg
     1801 taccggacaa aagcagcccg tctatacgca tggcgaactt gcccttgatc ccgcctcgca
     1861 cgaggccacc aaggccggtg tgccgttgcc gctggtgcca cgcgagttcg cgttgctgca
     1921 ggtgctgatc gaggagccca cgcgcgtatt caggcgtgcg gaactggagg agaagctgta
     1981 cggatggggt gaggaagtgg gcagcaatac cattgaagtg catgtccaca gtctcaggcg
     2041 caagattggc gcggagcaga tattgacgat ccggggcgtg ggctaccggc tcaagggact
     2101 cgaatgacat ctatccgccg ctggctgctc ggctggctga tcttcggact ggccgcgacg
     2161 tcgcttgcgg cgggctatgg catcttccac accgcgcgcc gcgaagcggg cgagttgttc
     2221 gactatgagc tgcgcaccgt cgcgctgtcg ttgccggcga atattgctac cgccgacgct
     2281 gccgagcggg ccagccacga cttcaacggc atagccgacg accggattgc aatcgatatc
     2341 tgggacaaac aaggcaagct cgtttatcac tcgctcaagg agcctgcgtt gccgcgcatc
     2401 gccgaaggat tccggtcgat tgagcgcgat gaataccgat ggcgcgtgtt tggcctgcag
     2461 cagccggagc ggtacattca ggtggcgcaa ccgttctcgg ttcgggagga tcttgcgctg
     2521 cggctcgcct ggcgcacatt gtggccgcta gcgctggtgg tgccggtga
//
LOCUS       DATGBK010000992         7331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289823, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000992 DATGBK010000000
VERSION     DATGBK010000992.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 7331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7331
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289823"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /locus_tag="VKJ77_13840"
     CDS             <1..782
                     /locus_tag="VKJ77_13840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase family protein"
                     /protein_id="HMC46399.1"
                     /translation="YPPEVKRRAAVNHRHRGFNALGDAVMYQATKPDYKEFFSIGLEL
                     PEDDPSVLAGEALRGPNNWPDFMPSLQPALYGYYEAIGACGADLLRAVAVSLDIDEMF
                     FVSKYTKRMQRTQMVYYPPQAPKSDADQFGVAPHTDYGCITLLWQDNVGGLQVKELAT
                     DSWIDAPPIPGTLVVNVGDLLARWSNDRFRSTLHRVINRSGQERYSIATFYDPTYGAS
                     VDPRDLGLEGVQPLYEPVAAGDYILGRINDSMGYRKKRANG"
     gene            790..2211
                     /locus_tag="VKJ77_13845"
     CDS             790..2211
                     /locus_tag="VKJ77_13845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC46400.1"
                     /translation="MKVIIQTLIDALGAESVRFGDAIEPRYLGDWSGRSPVPPLAVVL
                     PRSTDEVSTVLRLCNEARQSVVPQGGMTGLAGGAIPSGADICLSLERLVGIEEVDRAA
                     ATMTVLAGTTLQTVQDAAQEAGFEFALDLGARGSCQIGGNLATNAGGVRVLQSGTARD
                     QVLGLEAVLADGSVLSSMNKMVKNNTGYDLRNLFIGSEGTLGVITRAVLRLKPRRAAR
                     NTALCALKDYDGAVALLRSLQATFGDEIGAFEIMWPEFYDFGVALTRSRQSPLGEAYP
                     LYALIEQAGFSDDLGERFAAALNAQLEAGVVMDAVVAQSQAETQALWAIREATAELPV
                     KIEPINFDVSLPIGEIGHFVDACRKDFAARWPTHYGLYFGHIGDSNLHVTLDARSIPG
                     VTVEEVDLALYGMVRDYSGSISAEHGIGVLKRPFLGYSRSPAELACMQAIKHALDPHG
                     ILNPGKVLPAAGDQNARNEQGIQ"
     gene            2208..3332
                     /gene="hisC"
                     /locus_tag="VKJ77_13850"
     CDS             2208..3332
                     /gene="hisC"
                     /locus_tag="VKJ77_13850"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007837883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HMC46401.1"
                     /translation="MSVTAFIESLRAEVRGLPAYNAGLSGEFVRARYGVSHVAKLGSN
                     ENPRGASAAVLAHLAQFTTPGTLALYPDPSCSALRALIAERLAVDQEQLLFGNGSEDL
                     LAIAAHTFLAPGDEVITVVPSFGLHIIYPQSVGAKVITVPMRSDFEFDVDALIAAISP
                     QTRMLIISNPSNPVGCAMDAAEMRRLLNAVSPGTLVLWDEAYFEYAADEDRYPDSLSV
                     LRESGLPWLLLRTFSKAYGLAALRVGYGVASAPELARLMNRVRTPFNINQIAQQAAAV
                     AFGDQAHVAASVADARSGREWMCAELAGLGVSPAPSRANFLFFDCGEDAAKLASRMLE
                     DGVIVKPWREPGYESCMRVSIGSARDNALFIRSFERRRTM"
     gene            complement(3383..4924)
                     /locus_tag="VKJ77_13855"
     CDS             complement(3383..4924)
                     /locus_tag="VKJ77_13855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HMC46402.1"
                     /translation="MDINTAVTPPESADSDVSLLHKMGYAQELSRRMGAFSNFAVSFS
                     LICILSGGITSFQLGLSAAGGASIGLGWPLGSVFALVVAAAMAQIASSYPTAGGLYHW
                     SSILGGKTWGWLTAWFNLLGLVFVVAAINFGTWDPFFRTLIAPMFGVKPESLGWWHQT
                     IFLTLITASQAFLNHRGIRIASKITDVSGYLIFVVTVILVASLVIYSPVKVDFSRLWT
                     FKNFTGVDGGQWPAQTMAMAFLSGLLLTAYTITGFDASAHTSEETHDAARNVPRGIVK
                     SVLWSTLFGYVLVCSFVLVMPDIGAAIKQGTGFFEAILAPIPGPLRIVIELLLFFINY
                     VCGLAAVTSTSRMMFAFARDGGLPGSKFLRKVNAHRTPGTAIWVSAVLAIVITLYGDA
                     FSVLSAGSAVFLFISYAMPVAAGIFAEGKTWTEKGPFQLGMWSKPFAVAAVIGALILA
                     YVGIQPPNEKVIYVIVGMLAVLMLIWYGAGVRKSFAGPPVGNLSKERREKIVGLEARL
                     EENVE"
     gene            complement(5009..5794)
                     /locus_tag="VKJ77_13860"
     CDS             complement(5009..5794)
                     /locus_tag="VKJ77_13860"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013341419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC46403.1"
                     /translation="MGKSESVGGKLAGKIAIVSGGATGCGGAASVLFAKEGAQVAIVD
                     INADAGTQVATQIRESGGVAEFFKADVAKTDQVETAVARIAERFGTIDVLFNHAGSIV
                     VKPFLDTTDEDYQWLMDVNVKSMFTMTRAVLPHMLGAGGGSIVCTASISSTAATPLEV
                     LYCTTKGACAMFARAIAVEYRERGIRCNAVCPGFINTPHGQREIAALAQYGFDASEAA
                     LSLQQGRLCAPEEVAKAALFLASDDASFINGAHLYVDNCFTAA"
     gene            6062..7039
                     /locus_tag="VKJ77_13865"
     CDS             6062..7039
                     /locus_tag="VKJ77_13865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46404.1"
                     /translation="MQAVQPVRPAVDIHCCRSIDEQARLLESWNQTYCQISRGAFDGS
                     VSSVHAGAVRILVERMNRTVYQRGCVDVSRIAVGIPFQLEGHALLCGQVSHLDGLHVF
                     SGPGGFEFLSPDKHVVVNLEIAPLELSDPLLRLAMDNVQQALGNQPGVLNADPARLQA
                     FRSALAGLLDAVTSTPSSLADASVCASFERSVIVGLSDLLVDVSDTDVHTGPSRNWKL
                     VGAVRELVEASADCPLSVADLCLRLGVSRRTVQYAFDEILGTNPASYLRAVRLDRVRK
                     DLLQAGSVTDAATRWGFWHFGHFSNDYREQFGELPSQTLRRLRNGAGRA"
BASE COUNT         1411 a         2168 c         2282 g         1470 t
ORIGIN      
        1 cgtatccgcc ggaagtgaag cggcgtgccg cggtgaatca tcggcatcgc ggctttaatg
       61 cgcttggcga cgctgtcatg tatcaggcca ccaaacctga ctacaaggaa tttttcagca
      121 tcggcctgga gttgccggaa gacgatccga gcgtccttgc aggtgaagcg ctgcgcggcc
      181 cgaacaactg gcctgacttc atgccgtcgc tgcaaccggc actctatggg tactacgaag
      241 caatcggcgc gtgcggcgcg gatttgttgc gggcggtggc ggtgagcctg gatatcgacg
      301 aaatgttttt cgtgagcaaa tacacgaagc gcatgcagcg cacgcagatg gtctattacc
      361 cgccacaagc gcccaagtcg gacgcggatc agttcggtgt ggcgccgcat acggactacg
      421 ggtgcatcac gctgctgtgg caggacaacg tgggtggctt gcaggtgaaa gagctcgcaa
      481 cggatagctg gattgacgcg ccgcccattc cgggaacgct ggtggtgaac gtcggtgacc
      541 tgctcgcgcg ctggtcgaac gatcgctttc gttcgacgct gcatcgcgtc atcaatcgct
      601 cagggcagga gcgatattcg atcgcgacct tctacgatcc gacttatggc gcaagtgtgg
      661 acccgcgcga cctgggtctt gagggcgtgc agccgctata tgaaccggtg gctgcgggcg
      721 actacatcct ggggcggatc aacgattcca tgggttatag aaagaagcgc gcgaatggct
      781 gagcaaacga tgaaagtaat aatacaaacg ctgattgatg cactcggcgc cgagtccgtg
      841 cgcttcggcg atgccatcga accgcgctat ctcggcgact ggagtggtcg ctcgccggtg
      901 cctccgttgg cggttgtgct gccgcgctcg accgacgaag tctccaccgt gctgcgcctg
      961 tgcaatgaag cgcgtcagag cgttgtcccg cagggtggca tgaccgggct ggcgggcggc
     1021 gccattccct ccggcgccga tatttgcctg tcgctcgaac gactggtggg catcgaagaa
     1081 gttgatcgtg cggcggcgac catgacggtg cttgccggca ccacattgca aaccgtgcag
     1141 gacgccgcgc aggaagcggg gtttgaattt gcgctcgatc tcggtgcgcg cggctcgtgt
     1201 cagatcggtg gcaacctcgc cacgaacgcg ggcggcgtgc gcgtactgca gtccggcacg
     1261 gcccgcgacc aggtgctcgg acttgaggcc gtgcttgccg acggcagcgt gctcagttcg
     1321 atgaacaaga tggtcaagaa caatacgggc tacgacctgc gcaacctgtt catcggatcg
     1381 gagggaacgc ttggggtgat cacgcgtgcg gtattgcgtt tgaaaccacg ccgcgccgcg
     1441 cgcaatacag cgctgtgcgc gctgaaggat tacgacggcg cggtcgcgtt gctgcgctcg
     1501 ctgcaagcca ctttcggcga cgaaatcggc gcgttcgaaa tcatgtggcc ggagttctac
     1561 gactttggtg tcgcgctgac acgctcccgg caatcgccgc ttggagaagc atatccgctc
     1621 tatgcgttga tcgaacaggc cgggttctct gacgatcttg gcgagcggtt cgccgcggcg
     1681 ctcaacgcac agcttgaagc gggcgtcgtg atggacgcgg ttgttgcgca gtcgcaggcg
     1741 gagactcagg cgttgtgggc gattcgcgag gcgacggccg agttgccggt gaagatcgag
     1801 ccgatcaatt tcgatgtgag cttgcccata ggcgagatcg gtcatttcgt tgatgcctgc
     1861 cgcaaggact tcgctgcacg ctggccgacg cactacggtt tgtatttcgg ccacatcggc
     1921 gactcgaacc tgcatgtcac gctcgatgca cgttctattc ccggtgtgac agttgaagag
     1981 gtcgaccttg cgctgtacgg catggttcgc gattacagcg ggtcgatatc ggcggaacac
     2041 ggcattggtg tgcttaaacg gccgttcctg ggctactcgc gcagtcccgc cgaacttgct
     2101 tgcatgcagg cgatcaagca tgccctcgat ccgcacggca tcctcaatcc cggcaaggtg
     2161 ctgcctgccg cgggcgatca aaacgctcga aacgaacaag gaattcaatg agcgtgactg
     2221 cttttataga aagcctgcgt gctgaagtgc gcggcttgcc tgcgtacaac gcggggttat
     2281 cgggggaatt cgtgcgggcg cgctatggcg tttcgcatgt cgcgaagctt ggcagcaatg
     2341 aaaatccacg tggcgcgagc gcggccgtgc ttgcacatct tgcccagttc accacgcccg
     2401 gcacactcgc gctttatcct gatccttcat gcagcgcgtt gcgtgcgctg attgctgaac
     2461 ggctcgcagt tgatcaggag cagttgttgt tcggcaacgg ctccgaggac ttgctcgcta
     2521 ttgcagccca cacgttcctc gcgcccggcg atgaagtgat caccgtggtc ccatcgtttg
     2581 gtttgcacat catctatccg cagagtgttg gcgcaaaggt gatcacggtg ccgatgcggt
     2641 cggacttcga attcgatgtc gacgcgctga tcgctgcaat ttctccgcaa acgcgcatgt
     2701 tgattatcag taatcctagt aatccggttg gttgcgcgat ggacgccgct gaaatgcgtc
     2761 ggcttttgaa cgcggtgtcg ccggggacgc tggtgctgtg ggacgaggcc tatttcgaat
     2821 atgccgccga tgaagaccgt tacccggaca gtctttctgt gctgcgtgaa tcgggtttgc
     2881 catggctgtt gctgcgtacc ttttcgaagg cctatggact ggcggcattg cgggtgggat
     2941 acggcgtggc gtcggcgccc gaactcgcca ggctgatgaa ccgcgtgcgt acgccattca
     3001 atattaacca gattgcgcag caggctgcgg ctgtggcgtt tggcgatcag gcgcatgtcg
     3061 cggctagcgt ggcggatgct cgctccggtc gcgaatggat gtgcgctgag ttggccgggc
     3121 tgggtgtaag tccggcacct tcgcgcgcta atttcctgtt cttcgattgc ggggaggacg
     3181 cggcaaagct cgctagccgg atgctggagg atggggttat tgtgaagccc tggcgcgagc
     3241 cgggttatga aagctgcatg cgagtcagca ttggcagcgc cagggataac gctttgttta
     3301 tcaggtcgtt cgaaaggcgt cggacgatgt gattgggtcg cgccggtgga acgttaatcc
     3361 gttcaccggc gcgggcgaaa acttactcca cgttctcttc caaccgcgct tcaagcccga
     3421 caattttctc ccgccgttcc tttgacagat tgcctactgg cggcccggca aaactcttgc
     3481 gcacacctgc gccgtaccag atcaacatca gcaccgcgag catcccgaca atcacgtaaa
     3541 tcactttttc attcggcggc tggataccca cataagcaag aatcaacgca ccgataactg
     3601 ccgcaaccgc aaagggcttt gaccacattc ccaactggaa gggccctttc tctgtccacg
     3661 tcttgccttc ggcgaagatc ccggcggcta ccggcatggc gtaggagatg aacagaaaca
     3721 ccgcgctgcc tgcgctcaat accgagaagg cgtcgccgta taaagtgatg acaatggcaa
     3781 gcaccgccga cacccagatt gccgtgcccg gcgtccggtg cgcattgacc ttgcgcagga
     3841 acttcgaccc aggcaggcca ccgtcacgtg cgaacgcaaa catcatccgc gacgtcgacg
     3901 tcaccgcggc aagcccgcat acgtagttga tgaagaacag cagcaactcg atcacgatcc
     3961 gcaacggtcc cggaattggc gcgaggatcg cttcaaagaa tccggtgccc tgcttgatcg
     4021 ccgcgccaat gtcgggcatc acgagcacga acgagcagac cagcacatac ccgaacaagg
     4081 tcgaccacag cacggacttg acgatcccac gcggcacgtt gcgcgcagca tcgtgagtct
     4141 cctcggacgt gtgcgcggag gcatcgaaac cggtgatcgt ataggcggtc agcagcagcc
     4201 ccgagaggaa tgccatcgcc atggtttgcg ctggccattg tcctccatcc acgccggtga
     4261 aattcttgaa ggtccagagt cgcgaaaagt ccaccttgac cggtgagtag atcaccagcg
     4321 acgcaaccag gatcaccgtc acgacaaaga tcaggtaacc ggacacatcg gtgatcttgc
     4381 tggcgatccg gatgccacgg tgattcagga acgcctgcga cgccgtgatc aacgtaagaa
     4441 atatggtctg atgccaccag ccgagcgact cgggcttgac gccgaacatc ggagcgatga
     4501 gggtgcgaaa gaacgggtcc cacgtaccga agttaatggc ggcaactacg aacacgagtc
     4561 ccaagagatt gaaccatgca gtaagccagc cccaggtctt gccgcccagg atcgagctcc
     4621 agtgatacaa gccaccggca gtcggataag acgaggcgat ctgcgccatc gcggctgcaa
     4681 ccaccagcgc gaagactgag ccgagcggcc agcccagtcc gatcgatgca ccgccggccg
     4741 cgctgagtcc aagctggaac gaggtgatcc cgccggacag gatgcagatg agcgagaacg
     4801 atacggcgaa gttcgagaac gcgcccatgc ggcgcgagag ctcctgcgca taccccattt
     4861 tgtgcagcaa tgacacgtcg ctatccgcgc tttcgggcgg cgtaactgcc gtattgatgt
     4921 ccatggtggt cgatccttat ggctgaagct gctggtggac gttggattgg ggcggcgaac
     4981 tcatgcggcg atactcatgc ggcgataact acgccgcggt aaagcagtta tcgacgtaga
     5041 gatgcgcgcc gttgatgaag ctggcgtcgt cgctggcgag aaaaagcgct gccttggcta
     5101 cttcctcggg cgcgcaaaga cggccctgct gaagcgagag cgccgcttcg ctcgcgtcga
     5161 aaccgtattg cgccagcgcg gcgatttcac gctgcccgtg cggggtattg atgaaccccg
     5221 ggcacactgc attgcagcga attccacgct cgcgatactc cacagcaatc gcccgcgcga
     5281 acatcgcgca cgcgcccttg gtcgtgcaat acagcacttc gagcggggtg gccgctgtcg
     5341 atgagatcga cgccgtgcag acaatcgacc cgccgcccgc cccaagcatg tgcggcagca
     5401 cggcgcgggt catcgtgaac atgctcttga cgttgacatc catgagccac tggtagtctt
     5461 cgtcggtggt atcgaggaac ggtttgacga cgatgctgcc cgcgtgattg aacagcacgt
     5521 cgatcgtgcc gaagcgctca gcgatccgcg ccacggcggt ttctacctga tcggttttcg
     5581 ccacatccgc cttgaagaac tcggccacgc cgccgctctc gcgaatctgc gtcgcgacct
     5641 gcgtgccagc atcggcgttg atatcgacaa tggcgacctg tgccccttcc ttggcgaaca
     5701 gcacggaggc cgcaccgccg cagccggtgg ccccgcccga tacgatcgcg atcttgcccg
     5761 caagttttcc gccaacagac tcggatttgc ccattcctga cctctcgttg tttatccttt
     5821 atttaggcta ggcgcgacac aatttacgca ctatccaaaa ttggcaatgc agagggatag
     5881 accgagaaaa aactgcaaac ggcgtcatgg ggaggctcca aggcgctccg ggcagggttt
     5941 tcagcgatgg gcgcgcgcac gttgggcgct taccgtggcg ctcggtgtgc gccagaatga
     6001 ctgagaagga attttggtcg tttacacttt tttgacgcgt accgtccgcc aaggagtttt
     6061 tatgcaagcg gtccaaccgg tgcgtccggc tgtcgatatc cattgctgcc ggagcattga
     6121 cgagcaggcc cggctgctcg aaagctggaa ccagacctac tgccagatct cgcggggcgc
     6181 cttcgacggc tcggtcagtt ccgtgcatgc gggcgcggtg cgtatcctcg tcgaacgcat
     6241 gaaccggacg gtgtaccagc gcggttgcgt ggatgtttcg cggatcgcgg tgggcattcc
     6301 gttccaactc gaaggccacg cgttgttatg cggtcaggtg agtcatcttg acggactgca
     6361 tgttttctcc gggcccggag ggttcgagtt tttgtcgccc gacaaacacg tggtcgtgaa
     6421 cctggaaata gcgccgctgg aactgtccga cccgctactg cggcttgcta tggacaacgt
     6481 ccagcaagcg ctcggcaatc aaccgggggt gctcaatgca gatcccgcgc ggttgcaggc
     6541 gttcaggagc gcgctggcgg gtctgctgga cgcagtcacg tccacaccgt cgtcgctcgc
     6601 cgacgctagc gtgtgcgcga gttttgagcg gtcggtgatc gtggggctat ccgacttgct
     6661 ggtcgatgtc agcgataccg acgtgcatac cggaccgtcc cgcaactgga agctggtcgg
     6721 cgccgtgcgc gaactggtgg aagcgtcggc ggattgcccg ctgtcggtcg ctgacctgtg
     6781 cttgcggctg ggcgtcagcc ggcgcacagt ccagtacgca ttcgatgaaa tcctcggtac
     6841 caatccggcg tcgtacctgc gtgcggtccg gctcgatcgc gtccgcaagg acctgctgca
     6901 agccggctcg gtcaccgacg cggcgactcg ttggggcttc tggcacttcg gccatttctc
     6961 caacgactat cgcgagcagt ttggggaatt accgtcgcag acgttgcgcc gcttgcgtaa
     7021 cggggcgggg cgcgcttgag ggttcgagtt tgcattcggt tggcattcgg tttgcgtccg
     7081 ggcaccgaaa tacgcataag ccggcgagga tcagcctaaa ctaaaaggtc agacctcaac
     7141 tagcgaggag accatgcgct ccctcctgtt cgcgctctcc ctcttacttg cgggtttcgc
     7201 tcctcatgcc ggcgcgcaac aaccgccgtc atacgagcaa tccggcgact tcattgctac
     7261 cggcttccac ttcgaagacg gctcctcgct gccccaggtc acgcttcact acgtcacgct
     7321 cggcgtaccc c
//
LOCUS       DATGBK010000993         2003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_197396, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000993 DATGBK010000000
VERSION     DATGBK010000993.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197396"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(200..691)
                     /locus_tag="VKJ77_13870"
     CDS             complement(200..691)
                     /locus_tag="VKJ77_13870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dps family protein"
                     /protein_id="HMC46405.1"
                     /translation="MAKKIASPAVNIGISDKDRKKIADGLSHLLADTYTLYLKTHNFH
                     WNVTGPMFNTLHLMFEGQYTELALAVDSIAERIRALGVYAPGSYREFAKLSSIPEADG
                     IPVAEEMIRQLVEGQEAVVRTARAIFPLTDSANDEPTADLLTQRMQIHEKTAWMLRAM
                     LGQ"
     gene            complement(847..1017)
                     /locus_tag="VKJ77_13875"
     CDS             complement(847..1017)
                     /locus_tag="VKJ77_13875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46406.1"
                     /translation="MTQAIMTLERAVSGIEARSLNASRGVRLAIGFGIVAASYAAVII
                     EGLHGVGFAGLS"
     gene            complement(1089..>2003)
                     /locus_tag="VKJ77_13880"
     CDS             complement(1089..>2003)
                     /locus_tag="VKJ77_13880"
                     /EC_number="1.11.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HMC46407.1"
                     /translation="MHGFGSHTYSFINANNERFYVKFHFKSQQPLENYTDAEASAVVG
                     GDRESAQRDLVDNIDRGNFPKWNFRVQVMTEAEAATYRMNPFDITKVWPHKDFPLIDV
                     GTIELNRNAGNYFADVEQSAFTPANVVLGIGFSPDRLLQGRLFSYGDAHRYRLGINHH
                     QIPVNAPKTAVQNSFHRDGGMRVDGNSGGRVNYEPNRFGDFAQDPSVNEPALAAGAVE
                     RYDHREDTDYYSQPGALFRLFDDAQKQRFFGNIARHIHGVPNEIVAVQIEHFRRADPA
                     YAAGVVAALAALGQKVETVDANAEAAMK"
BASE COUNT          412 a          625 c          547 g          419 t
ORIGIN      
        1 agtaatggtc gaggctgttg aacgtttggt tttcgaagag cgtccttgac gcgtatttgc
       61 acatatagcg gtggccacga gcggcccgcg catcaatctg cctcttcaaa aaaaacaaaa
      121 ccccgtactt gttgaagtgc ggggttctct ccagtcgccc ggtcataccc cagcgactag
      181 accaacacgg atactaggct tactgtccca gcatcgcgcg caacatccac gcggtctttt
      241 cgtgaatctg catgcgctgc gtcagcaagt cagccgtcgg ctcatcatta gcgctatcgg
      301 tcagcgggaa aatcgcgcgc gccgtgcgca cgactgcttc ctgcccttcc accaactggc
      361 gaatcatttc ttcggctacc gggatgccat cggcttccgg aatggacgac agcttcgcga
      421 attcacgata gctgcccggc gcgtacacac ccagcgcgcg aatgcgttcg gcgatggaat
      481 caaccgccag cgccagttcc gtgtactgcc cttcgaacat cagatggagc gtgttgaaca
      541 tcggccccgt gacgttccag tgaaaattgt gggtcttcag atacagcgtg taggtatcgg
      601 ccaataggtg cgacaaacca tcggcgatct tcttgcggtc tttgtcgctg ataccgatgt
      661 tcacagccgg tgatgcgatt ttcttcgcca tagtgactcc gtgagagtga tacgaacaat
      721 gcgggcgacc cggccaatgc tgctgccggg gctgccgagc gttcgtcagt ttatcttaga
      781 aacgcggtgc gacccgccat ggaggcgggc cacaagggat atcgggcgcg tcaatacgac
      841 gcgtcttcag gacaatccgg cgaaaccaac gccatgcaat ccttcgataa tcaccgccgc
      901 gtaactcgca gcgacaatgc caaagccgat cgcgagccgt acgccgcgcg acgcattgag
      961 actcctcgcc tcgataccgc tcaccgcccg ttcgagcgtc atgatcgctt gtgtcatcgt
     1021 cgttctcctc gagtccagca tgtcaaatca aagagggacg cgcattctga aaacgcgccc
     1081 cgtcctgctt acttcattgc ggcttccgca ttcgcatcaa ccgtttcaac cttctggccc
     1141 aacgccgcga gcgctgcgac aacgcccgcc gcataggccg gatcggcacg ccggaagtgc
     1201 tcgatctgca ccgcgacgat ctcgttcggc acgccgtgaa tgtgccgcgc gatgttgccg
     1261 aagaagcgct gcttttgcgc gtcgtcgaag aggcggaaca gcgcgcccgg ctggctgtag
     1321 taatccgtgt cttcacgatg gtcataacgc tcgaccgcac ccgccgccaa tgccggctcg
     1381 ttcacgctcg ggtcctgcgc aaagtcacca aaacggttcg gctcgtagtt cacgcggccg
     1441 ccgctgttgc cgtcgacgcg catgccgcca tcgcgatgaa acgagttctg cacggctgtc
     1501 ttcggcgcgt tcaccggaat ctgatggtga ttgatgccaa gacgataccg atgcgcatcg
     1561 ccgtacgaga acaaacgtcc ttgcaacaag cggtccggcg agaagccaat ccccagcacc
     1621 acgttcgccg gcgtaaaggc cgactgctcg acatccgcaa aataattgcc tgcattgcga
     1681 ttcaactcga tcgtgcccac gtcgatcagc gggaaatcct tgtgcggcca caccttggtg
     1741 atatcgaacg gattcatgcg atacgtcgcg gcttccgctt ccgtcatcac ctggacgcgg
     1801 aaattccact tcgggaaatt gccgcgatcg atgttgtcta ccagatcgcg ctgcgcgctt
     1861 tcccgatcgc cgcccacgac tgctgaggct tcggcatcgg tgtaattctc aagcggctgc
     1921 tgcgacttga agtggaactt cacatagaag cgctcgttgt tcgcgttgat gaacgaatac
     1981 gtgtgcgagc cgaaaccatg cat
//
LOCUS       DATGBK010000994         2882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_150303, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000994 DATGBK010000000
VERSION     DATGBK010000994.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2882
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150303"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..386
                     /locus_tag="VKJ77_13885"
     CDS             <1..386
                     /locus_tag="VKJ77_13885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HMC46408.1"
                     /translation="CIIQRYFFVLIAVFALLGASFRGWRGIALLETLVALSALGGVVA
                     AGRHVYVQAHPGFSCGFDALQPVVDSLPPAQWLPQVFKVAGLCETPYPPIFGLSLPQW
                     GLIAFAVIFLFVAGSLVSKRRLRAG"
     gene            848..2359
                     /gene="xdhA"
                     /locus_tag="VKJ77_13890"
     CDS             848..2359
                     /gene="xdhA"
                     /locus_tag="VKJ77_13890"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017234198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004854 - xanthine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase small subunit"
                     /protein_id="HMC46409.1"
                     /translation="MTTQTIRFFQRNALREVHDVPASRTVLQHLREHDQCTGTKEGCA
                     EGDCGACTVVIGELDAEGQPVLKAVNACIQFMPTLDGRALFTVEDLRAKDGTLHPVQQ
                     AMVDCHGSQCGFCTPGFVMSMWALYQNQPADAGLPTRDEINAALSGNLCRCTGYRPIV
                     DASQKMFEYPRAPLDRDALKRQLETIQRKETLEYSAPDARGAAFGRPTFFAPVSLAEF
                     ARLRADHPDARILAGSTDVGLWVTKQFRNLGDVLYIGNVNELKSITRDGQWLSIGAAA
                     SLEDSYGALSAVYPELAELWTRFASRPIRNAGTLGGNVANGSPIGDSMPALIALDAEI
                     VLQKAAKVRTMPLDAFYLGYQKSALETGEFVAGIRVPLPSAKLRFRTYKISKRYDQDI
                     SAVCAAFAVTLDGTRVATARFAFGGMAATPKRASNAEAVLVNEEWNEANVQAAMRALD
                     VDFQPLTDMRASSEYRSKVARNVLWRFFLETREDSPLALRDVNAFAFDVQCAT"
     gene            2388..>2882
                     /locus_tag="VKJ77_13895"
     CDS             2388..>2882
                     /locus_tag="VKJ77_13895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase molybdopterin binding
                     subunit"
                     /protein_id="HMC46410.1"
                     /translation="MNKRTDPHHIDHAADGALALHAAAKKPEPAAIGVSLPHESATLH
                     VSGEATYVDDIGELRGTLHAALGLSRHAHARIVSINLDLVLAAPGVIAVFTADDIPGE
                     NNCGPVLHDDPILAKDEVLYLGQPVFVVIAETHDLARRAAALAKSEEVIRYEPREAIL
                     TPRDA"
BASE COUNT          499 a          934 c          858 g          591 t
ORIGIN      
        1 tttgcatcat tcaacgctac tttttcgtgc tgatcgcggt ctttgccttg ctcggcgctt
       61 cgttccgggg atggcgcggg atcgcgttgc tcgaaacgct ggttgcgctg tccgctctcg
      121 ggggcgtggt agcagctggc cggcacgttt atgtgcaggc gcatccggga ttcagctgcg
      181 ggttcgatgc cctccagcct gtcgtggatt cacttccgcc cgcgcagtgg ctgcctcagg
      241 tcttcaaggt cgcgggcctt tgcgagacgc cctatccgcc cattttcgga ctctcgcttc
      301 cgcaatgggg tcttatcgcg tttgcggtga ttttcctgtt cgtcgctggc agtttggtga
      361 gcaagcgcag gttgcgcgcg ggttgagtac ggatgccggc cggttcggac cttagacctt
      421 ggctgaacgg ctctcgcttt ccgcaaacgg cggggccgcg gtgcgtggcg agcctaggcc
      481 ttgccaaaga cggctattgc gtagcctcgc tgttttgaag cgccaccgcg cacgaacgtc
      541 catcgccgtt gtccgatccg ccgggcctgg acaccaccgg ccaaagccgc gtcctcgccc
      601 tatcgtttta tcaaagtgcc gtccccctca atgtccctcc gtgcgggttt ttggcgtttt
      661 tccgccgacc ctcatccggc tcttcgcata gtcttgatac gttcgccgga atctttttga
      721 gatattgcgg tgatatcgtt acctatggat ggcgatccac gtgcgctctt tcggcctggt
      781 ttcttttgaa tcctgatgcc aattttcgcg taacgcgcgc ccgatccgca atgtctcgga
      841 cttctttatg acaacgcaaa ccatccggtt cttccagcgc aacgcgctac gcgaagtgca
      901 cgacgtaccc gcttcccgta cggtgctcca gcatttgcgc gagcacgacc aatgcaccgg
      961 taccaaagag ggatgcgcgg aaggcgattg cggtgcctgt acggtagtga tcggtgaact
     1021 cgatgcagaa ggccaacccg tcctcaaggc cgtcaatgcc tgcatccagt tcatgcctac
     1081 gcttgacggc cgggcgctct ttactgtgga agacctgcgc gccaaggacg gcacgctgca
     1141 tccggtccag caagccatgg tcgattgcca cggctcgcaa tgcggcttct gcacgcccgg
     1201 tttcgtgatg tcgatgtggg cgctttatca gaatcagccc gccgacgctg gcctgcctac
     1261 ccgcgacgaa atcaacgcgg ccctctcggg taatctctgc cgctgcacgg gctatcggcc
     1321 gatcgtggat gcgtcgcaga aaatgttcga atatcctcgc gcgccgcttg atcgcgacgc
     1381 gctcaaacgc cagctcgaaa ccatccagcg caaggaaacg ctcgaatact cggctcccga
     1441 cgcgcgcggc gctgcattcg gtcgtccgac gttcttcgcg cccgtttcgc tcgccgaatt
     1501 cgcccgcttg cgcgccgacc atccggacgc gcgcatcctg gccggcagca cggacgtcgg
     1561 cctctgggtc accaagcaat ttcgcaatct cggcgacgtc ctgtatatcg gcaatgtgaa
     1621 cgagctcaag tcgatcaccc gcgacgggca atggctgagc atcggtgctg cggcctcgct
     1681 ggaagattca tacggcgcgc tctcggccgt ttatccggaa ctggcggaat tatggacgcg
     1741 ctttgcatcg cgccctatcc gcaacgccgg cacgctcggc ggcaacgtgg cgaacggttc
     1801 gcccatcggc gattccatgc cggcactgat tgccctcgat gcggaaatcg tgctgcagaa
     1861 agccgctaaa gtccgcacga tgccgctcga cgccttctat ctcggctatc aaaaatccgc
     1921 gctggaaacg ggcgaattcg tcgcggggat tcgcgtgccg ttgccatcgg cgaaattgcg
     1981 cttccggacc tacaagatat ccaagcgata cgaccaggac atctcggccg tgtgtgcagc
     2041 attcgccgtg acgctcgacg gcacccgcgt ggcaaccgcg cgtttcgcgt ttggcggtat
     2101 ggctgccacg cccaagcggg catcgaatgc ggaagccgtg ctggtgaacg aggagtggaa
     2161 cgaggccaac gtgcaagccg ccatgcgcgc gttggacgtc gacttccagc cgctcaccga
     2221 catgcgtgcg tcgagcgaat accgcagcaa ggtggcgcgc aacgtgctgt ggcgtttctt
     2281 cctcgagacc cgtgaggatt cgccgctcgc actccgcgac gtcaacgcgt tcgcattcga
     2341 cgtgcaatgc gcgacatgac gctgcacctt gccccaggga ccacgcgatg aacaagcgta
     2401 ccgatccaca ccacatcgac catgccgccg acggagccct cgcgctgcac gccgcggcga
     2461 aaaagccgga gcctgcagcg attggcgtca gcttgccgca cgaatcggcg accctgcatg
     2521 ttagcggcga agcgacttac gttgatgaca taggcgagct gcgcggcaca ctgcacgcgg
     2581 cgcttggcct gtcgcggcat gcgcatgcac gcatcgtctc gatcaatctc gacctggttc
     2641 tggccgcgcc cggcgtgatc gcggtattca ccgccgacga catccccggc gagaacaatt
     2701 gcggccccgt tctccacgac gacccgatcc tcgcgaaaga tgaagtgctg tatctggggc
     2761 aaccggtgtt cgtggtgatt gcggagacgc atgatctcgc gcgccgtgcg gcagcgcttg
     2821 ccaaaagcga agaagtgatc cgatacgaac cgcgcgaagc catcctcacg ccgcgcgatg
     2881 cg
//
LOCUS       DATGBK010000995         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289854, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000995 DATGBK010000000
VERSION     DATGBK010000995.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289854"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VKJ77_13900"
     CDS             <1..298
                     /locus_tag="VKJ77_13900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pilus assembly protein CpaE"
                     /protein_id="HMC46411.1"
                     /translation="IEDRDNNPATSLLLNSPNAAVAGKVETADFSSAVGRNVLHEVHF
                     ETKSLSIAENLGEAPKEKAAHGFNQSITRIANDLTGQHGTVERTLLHKFKLRRA"
     gene            298..1707
                     /locus_tag="VKJ77_13905"
     CDS             298..1707
                     /locus_tag="VKJ77_13905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HMC46412.1"
                     /translation="MFGQKQAALMQTERVPTEGEVALAAFEAVGAPVMPVPAVSSAAM
                     VEGNEALVRSDLFRVIRSGVFDSMNASAVIGKTREQMKPGVEQLVLSIAERERLNITM
                     SEQGQIVGELLNDMFGLGPIEPLLADETVTDVLVNGPDQVYVERHGRLELTAYKFRDN
                     AHVVNVAQRIAAGVGRRVDESSPMVDARLADGSRVNVVLPPLAIHGATISIRKFSKRN
                     ITLYRMAQQGNMSVAMANVLKLASTCRLNIIVSGGTGSGKTTLLNALSHFIGLGERTI
                     TIEDAAELQLVQPHVVSLETRPENAEGLGAVAQRDLVRNALRMRPDRIILGETRGAEA
                     FDVLQAMNTGHDGSMTTIHANTPRDGITRLESMVMMANGNLPLLSIRRQIASAVHLIV
                     QIERMRDGMRRVTRITELVGMEGDVIITQDLFTFHYDASAYSEEVKGVYQCASVRPAF
                     SARAAYYGLEESLLEAMRT"
     gene            1704..>2038
                     /locus_tag="VKJ77_13910"
     CDS             1704..>2038
                     /locus_tag="VKJ77_13910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion system protein"
                     /protein_id="HMC46413.1"
                     /translation="MSPIDVFTVCSFIGVLLCGVMAIVVMDMRNKRPHARIRTRMHES
                     FEIQTTRGKRKVDLNSDLFTVDKESNVFSGWIRAKLSRLRTVAGATGIRVVIAAIIIG
                     ELVALLMTH"
BASE COUNT          445 a          601 c          617 g          375 t
ORIGIN      
        1 catcgaggac cgcgataaca acccggcgac atcgctgctg ctgaacagcc caaacgcagc
       61 agtcgcaggc aaggtggaga cggctgattt ctcttcggcg gtcggtcgca atgtgctgca
      121 cgaagtgcac ttcgaaacca agtccttgtc gatcgcggaa aatctcggtg aggcgccgaa
      181 ggaaaaagcc gcccacggct tcaaccaatc gatcacgcga attgccaacg atctgactgg
      241 acagcatggg accgttgaac gcacgctgct gcacaagttc aaactcagga gagcatgatg
      301 ttcgggcaaa agcaggccgc gctaatgcag accgaacgcg ttcccacaga aggcgaggtg
      361 gcgctggcgg cattcgaggc agtcggcgcg cctgtcatgc ctgtgccggc ggtctcctcc
      421 gcagcaatgg tcgaaggcaa cgaagcgctt gttcgctccg acctgttcag agtcattcgc
      481 agcggcgtat tcgattcaat gaacgcctca gcggtgatcg gcaagacacg ggagcagatg
      541 aagcccggtg tcgaacaact cgtgctgagc attgcggaac gggagcgcct gaacattacg
      601 atgtccgagc aagggcagat cgtcggtgag ttgctgaacg acatgttcgg acttgggccc
      661 attgaaccgc tgcttgctga tgaaacggtc accgacgtgc tcgtgaacgg tccggatcag
      721 gtttatgtgg aacgccacgg ccgcctcgaa ttgactgcgt ataagttccg cgacaacgcc
      781 cacgttgtca acgtcgcgca gcggattgcc gcgggcgtcg gacgccgggt agacgaaagc
      841 agtccaatgg tcgatgcacg gctcgccgat ggcagccggg tcaacgtcgt gttgcccccg
      901 ctcgccattc acggcgcgac tatctccatt cgtaaattct cgaagcgcaa catcacgctc
      961 taccgcatgg cgcagcaggg aaatatgtca gtggcaatgg caaacgtgct gaaactcgcg
     1021 agcacgtgcc gcctcaatat catcgtgtcc ggcggcacgg gctccggcaa aaccaccttg
     1081 ctcaatgcgc tgtcgcattt catcggactg ggcgaacgca ccatcacgat tgaagacgcg
     1141 gccgaactgc aacttgtgca gccgcacgtt gtcagccttg agacgcgacc ggaaaatgct
     1201 gaaggactcg gcgccgtcgc ccagcgcgac ctcgtgcgca atgcgctgcg gatgcgtccg
     1261 gaccggatca tcctcggcga aacacggggc gcagaagcat tcgacgtttt gcaagccatg
     1321 aacaccggcc acgacggctc aatgaccacg atccatgcga acaccccgag agacggcatc
     1381 acgcggctgg aaagcatggt catgatggcc aacggcaact tgccgctgct gtcgattcgc
     1441 cggcagatcg caagcgcggt gcacctgatc gtgcagatcg agcggatgcg cgacggcatg
     1501 cgacgtgtca cgcgcatcac tgagctggtc ggcatggaag gcgatgtcat catcacgcaa
     1561 gacctgttca cgtttcacta cgacgcgagc gcctacagtg aagaggtcaa gggtgtgtac
     1621 caatgcgcgt cggtcaggcc cgccttttct gcgcgcgctg cctactacgg gttggaggaa
     1681 tcgctgctgg aggccatgag gacatgagcc cgatcgacgt cttcaccgtg tgctcgttca
     1741 ttggtgtgct tctctgcggc gtgatggcca tcgtcgtcat ggacatgcgc aacaagcggc
     1801 cgcacgcacg gatcagaacg cgcatgcacg aatcgtttga gattcagaca acgcgcggga
     1861 agcgcaaggt cgacctaaat tcggacttgt tcaccgtcga caaagaatct aacgtattca
     1921 gcggctggat tcgggccaag ctttcgcgcc tgcggaccgt tgcgggcgcc actggcatcc
     1981 gcgtcgtcat tgcggcaatc attattggcg aactggtcgc gttgctcatg acgcacta
//
LOCUS       DATGBK010000996         2099 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289858, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000996 DATGBK010000000
VERSION     DATGBK010000996.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289858"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2099
                     /locus_tag="VKJ77_13915"
     CDS             <1..>2099
                     /locus_tag="VKJ77_13915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46414.1"
                     /translation="GRSFRLGDIATIKRGYLDPPATQMRAGEKPVLGIGITMQPGQDV
                     VQLGKALDAKAAELRAQLPAGLVLNEVSSMPHAVSKSVDDFLEAVAEAVIIVLIVSLV
                     SLGVRTGMVVVISIPVVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIISVEMM
                     AVKLEQGWNRSRAAAYAYTSTAFPMLTGTLVTVAGFLPIALAKSSTGEYTRSIFEVSA
                     IALIASWFAAVVLIPLLGYKLLPERKREAHHAHDHEHDIYNTKFYIRLRGWLTWCIER
                     RFVVLGITLVLFVIALAGFTLVPQQFFPSSDRSELLVDVRLQEGASFEATLRETKRLE
                     KVLEGRPEIDHVVNFVGSGAPRFYLPLDQQLQVPNFAQFVITAKSVEDREKLARWLEP
                     VLREKFSSIRTRLSRLENGPPVGYPVQFRVSGDDLPTVRGIAEKVFAEMSADTGTANV
                     QYDWDEPSERSVRFDIDQKKARELGISSQDVSDFLAMQLTGYTVTQYRERDKLISVDL
                     RAPKSERVDPAKLATLAMPTPNGPVPLGAIGHVVNDLEYGVIWERDRQPTITVQSDVK
                     AGAQGIDVTRAIEKKLATLRAGLPVGYRIEVGGPVEESEKGQSSINAQMPIMAIVVLT
                     LLMIQLQSFARVMMVVLTAPLGLIGVVIALLLFNKPFGFVAMLGVIAMFGIIMRNSVI
                     LVDQVEQDIAAGHPRFD"
BASE COUNT          377 a          617 c          675 g          430 t
ORIGIN      
        1 acgggcgctc gtttcgtctc ggcgacatag cgaccatcaa gcgcggttat ctcgatcccc
       61 cggccacgca gatgcgcgcc ggcgagaagc cggtgctggg tatcggcatc acgatgcagc
      121 cgggtcagga cgtcgtgcaa ctgggcaagg cgctggatgc caaggccgcc gaattgcggg
      181 cgcaactccc cgccggcctc gtgctcaacg aagtgtcgag catgccgcat gcggtatcga
      241 agtcagtcga tgactttctc gaagcggtcg ccgaagcggt catcatcgtg ctgatcgtga
      301 gcctggtgtc gctgggcgtg cggacaggca tggtggtcgt gatctcgatt ccagtcgtgc
      361 tcgcagtcac cgccctcttc atgtatctct tcgatatcgg cctgcacaag gtctcgctcg
      421 ggacgctggt cctcgcgcta ggtctgctgg tcgacgacgc gatcatctca gtcgaaatga
      481 tggcggtgaa actcgaacag ggctggaatc gctcgcgtgc tgcggcctac gcctatacca
      541 gcaccgcgtt tcccatgctc acgggcacgc tcgtcaccgt ggccggtttc ctgccgatcg
      601 cgctggccaa atccagcacc ggcgaatata cgcgctcgat cttcgaagtg tcggccattg
      661 cgttgatcgc ctcgtggttt gcggcagtcg tgctgattcc gctgctcggc tacaagctgt
      721 tgcccgagcg caagcgcgag gcgcatcacg cccacgacca tgaacacgat atctacaaca
      781 ccaagttcta catccgtctg cgcggctggc tgacatggtg tattgagcgg cgcttcgtcg
      841 tgctcggcat cacgctcgtg ctgttcgtga tcgcgctggc cgggttcacg ctggtgcctc
      901 aacaattctt cccgagctcg gaccgctcgg aactgctcgt cgatgtccgg ctgcaggaag
      961 gcgcctcgtt cgaagccacg ttgcgcgaga ccaaacgtct cgagaaggtg ctggagggac
     1021 ggcccgagat cgatcatgtg gtgaacttcg ttggctcggg cgcgccgcgc ttctatctgc
     1081 cgctcgacca gcagttgcag gtgccgaact tcgcgcagtt tgtcattacg gcaaagtccg
     1141 tcgaagatcg cgagaagctc gcacgctggc tcgagcctgt gttgcgcgag aagttttcgt
     1201 caattcgcac gcgtttgtcg cgactcgaaa acggtccgcc agtcggctat ccggtgcagt
     1261 tccgcgtgag cggcgacgat ctgccgacgg tgcgcggtat cgctgaaaag gtctttgccg
     1321 aaatgagtgc cgacaccggc acggctaatg tccagtacga ctgggacgag ccgtcggagc
     1381 gctcggtgcg cttcgatatc gaccagaaga aggcgcgtga actcggtatc agttcgcagg
     1441 acgtatcgga tttcctcgcg atgcaactga ccggctatac cgtcacgcag tatcgtgaac
     1501 gcgacaagct gatcagtgtc gatttgcgtg caccgaaaag cgaacgggtc gatccggcga
     1561 agctcgccac gcttgcaatg ccgacgccga acggacccgt gccgctcggc gcgatcgggc
     1621 atgtggtgaa cgatctggaa tacggcgtga tctgggagcg cgaccgtcag ccgaccatca
     1681 ccgtgcagtc ggacgtgaag gccggcgcgc aagggattga cgtgacgcgt gcgatcgaga
     1741 agaagctcgc cacgttgcgg gcgggcttgc cggtggggta tcggatagaa gtgggcggac
     1801 cggttgagga aagcgagaaa ggccagtcgt ccatcaacgc gcaaatgccg atcatggcga
     1861 ttgtcgtgct gacgctgctg atgatccagt tgcagagctt cgcacgggtg atgatggtgg
     1921 tgctgaccgc gccgctcggg ttgatcggcg tggtgatcgc gttgctgctg ttcaacaagc
     1981 cgttcgggtt tgtcgccatg cttggcgtga tcgccatgtt cggcatcatc atgcgcaact
     2041 cggtgattct cgtcgatcag gtcgaacagg acattgccgc ggggcatcct cgctttgac
//
LOCUS       DATGBK010000997         2308 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_35681, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000997 DATGBK010000000
VERSION     DATGBK010000997.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35681"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..508
                     /locus_tag="VKJ77_13920"
     CDS             17..508
                     /locus_tag="VKJ77_13920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyquinol 1,2-dioxygenase"
                     /protein_id="HMC46415.1"
                     /translation="MQETYLGSLGNYRKGSIEIIKGKPGHYAMSNVFEVASHAAPYEK
                     VVVGKNLKYVIETVRAEGVSPWFSASHDEFAVVLDGEIDVHFIKPSDGPLVNADTEGS
                     VRIEGEPAGQPMGYVRLRRGHQALLPAGTAYRFEARQTGVLLVQTILGSCSVEKWAEI
                     CIQ"
     gene            538..1551
                     /locus_tag="VKJ77_13925"
     CDS             538..1551
                     /locus_tag="VKJ77_13925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyquinol 1,2-dioxygenase"
                     /protein_id="HMC46416.1"
                     /translation="MFKEQAMDQSAGFQSVTASDPDKTNGYRTFTLGDFEFSRDAYFV
                     TVKWPSKGESRSHQMHADDFLRAMMRDVAWGFFYGWVNFDEVIGTRNHYGRVDMYAGS
                     YNASFKDAGVDYTQQFETPLIMATFKAILRDWVNEGFDPFAAPEETGSAFGIKHGDNI
                     GAIERTRIATKRMPGLVGDSPLRDDLPVNRQFADIGQDEPEIHAKPGFEHELHAFSLF
                     KYLSRSDVTWNPSVTSVCKQSLFCPTTEEFVLPVFHGNDRVEWFLQLSDQIIWDVGDK
                     DTGEPRARITMNAGDIAAMPADIRHKGYSQKRSMLLVWENATPDLPKRYESGELPPYP
                     VPL"
     gene            1644..>2308
                     /locus_tag="VKJ77_13930"
     CDS             1644..>2308
                     /locus_tag="VKJ77_13930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC46417.1"
                     /translation="MQTQLFINGRFVPAESGVTLASLNPHDNSVIAQVSMAGHADIDR
                     AVAAAKAAFPKWSNMAAMDRGRLLLKLADAIEANADELARLESLDTGHPIRDTRNLDV
                     PRTAVTFRYFGGMADKFEGTVVPVEAGFLNYVTREPVGVVGQVVPWNFPLMFTSWKMA
                     PALAAGNCVIMKPAELTPLSSLAIAELMAEVGFPPGVVNILPGLGHVAGQYIAEHPEI
                     SKVA"
BASE COUNT          481 a          692 c          687 g          448 t
ORIGIN      
        1 agcaatggag acagacatgc aagagaccta tctcggcagc ctcggcaatt accgcaaggg
       61 ctccatcgaa atcatcaagg gcaaacccgg acattacgcc atgtccaatg tattcgaggt
      121 tgccagccac gcggcgccct acgagaaagt ggtggtcggc aaaaacctca aatacgtgat
      181 cgagacggtt cgcgccgaag gcgtctcgcc atggttcagc gcatcgcacg atgagttcgc
      241 ggtggtgctc gacggcgaga tcgacgtgca tttcatcaag ccctccgacg gtccgctcgt
      301 caacgccgat acggaaggca gcgtgcgcat cgagggcgaa cctgcaggcc agccgatggg
      361 gtatgtgcgc ctgcgccgcg gccatcaggc cctgctgccg gcaggcactg cttatcgatt
      421 cgaagcccgc cagacaggcg tcctgctcgt ccagaccatt cttgggtcct gctcggtcga
      481 gaagtgggcc gaaatctgca ttcaataagg ccgtgagccg ccgcaacgac ctgatcaatt
      541 ttcaaggaac aagccatgga ccagtcagca ggttttcaaa gtgtcaccgc gagcgacccg
      601 gacaagacga acggttaccg gaccttcacg ctaggcgatt tcgaattcag ccgcgacgct
      661 tatttcgtca cggtcaaatg gccgtccaag ggagaaagcc gttcgcacca gatgcacgcc
      721 gacgacttcc tgcgggccat gatgcgcgac gtggcgtggg gatttttcta cggctgggtc
      781 aattttgacg aagtgatcgg cacgcgtaat cactacggcc gcgtggacat gtatgccggt
      841 tcgtataacg cgagcttcaa ggacgcgggc gtcgactaca cgcagcagtt cgaaacgccg
      901 ctgatcatgg caaccttcaa ggcgatcctt agagactggg tcaacgaagg ctttgatccg
      961 ttcgccgctc ccgaagaaac cggttcggca ttcggtatca agcatggcga caacatcggt
     1021 gcgatcgagc gcacgcgcat tgcgacaaag cgcatgccgg ggctcgtggg tgattcgccg
     1081 ttgcgcgacg acctcccggt caaccggcaa tttgcggata tcggccagga cgagccggag
     1141 atccacgcca agccgggctt cgaacatgag ctgcatgcgt tcagtctctt caaatacctt
     1201 tcgcgctcgg acgtgacctg gaatccatcg gtcacgtcgg tgtgcaagca gagtctcttt
     1261 tgtccgacca cggaggaatt cgtactcccg gtctttcacg gcaacgaccg tgtggagtgg
     1321 ttcctgcaac tctccgacca gatcatctgg gacgtcggcg ataaagacac gggcgaacca
     1381 cgcgcccgca tcacgatgaa cgccggcgac atcgcggcca tgcctgccga tattcgccac
     1441 aagggttatt cgcagaagcg ttcgatgcta ctcgtctggg agaacgcaac gcctgacctg
     1501 cccaagcgtt atgagagcgg cgaactcccg ccgtatccgg taccgcttta aaccactttt
     1561 gcttattcag gtcccgaacg acgccggtct tgccagcgtc gcgggcaggg cttcgtcttc
     1621 cgctttcatc aagcaggacc accatgcaaa cgcaactgtt catcaatggc cgctttgttc
     1681 ccgccgagag cggtgtaacg ctggcatcgc tcaacccgca cgacaactcc gtcatcgctc
     1741 aggtgtcgat ggccgggcat gcggacatag accgcgccgt cgccgcggcg aaagctgcgt
     1801 ttccgaagtg gagcaacatg gcggcgatgg atcgtggccg cctgttgctc aagcttgccg
     1861 atgctattga agcgaatgcc gatgaactgg cccggctcga atcgctggac acagggcatc
     1921 cgattcgcga tacccgcaat ctcgacgtgc cgcgcacggc cgtcacgttt cgctatttcg
     1981 gcggcatggc ggacaagttc gaagggacgg tcgtgccagt tgaagcgggc ttcctgaact
     2041 atgtgacgcg cgaaccggtc ggcgtggtcg gacaggtagt gccatggaat ttcccgttga
     2101 tgttcaccag ctggaagatg gcgcctgcgc ttgccgccgg caattgcgtg atcatgaaac
     2161 cggccgaact cacgccgctc tccagtcttg cgatcgccga actgatggcc gaggtaggtt
     2221 ttccgccggg cgtggtcaac atcttgcctg gcctcggtca cgtggcgggg caatatattg
     2281 ccgagcatcc ggagatcagc aaggtggc
//
LOCUS       DATGBK010000998         1723 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127413, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000998 DATGBK010000000
VERSION     DATGBK010000998.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127413"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            378..1580
                     /locus_tag="VKJ77_13935"
     CDS             378..1580
                     /locus_tag="VKJ77_13935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007746880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent formate dehydrogenase"
                     /protein_id="HMC46418.1"
                     /translation="MAKVLCVLYDDPVDGMPKKYARDDIPAITKYHDGQSAPTPKAID
                     FNPGELLGSVSGELGLRKFLESQGHTLVVTSDKDGPNSTFERELEDAEIVISQPFWPA
                     YLTAERIARAPKLKLALTAGIGSDHVDLQAAIDRGITVAEVTFCNSISVAEHVVMMIL
                     SQVRNYLPSHEWVKKGGWNIADCVSRAYDLEGMNVGTVAAGRIGAAVLRRLKPFDVKL
                     HYTDRHRLPEAVERELGATWHPTAESMARVCDIVTINCPLHPETEHLFDEKMISKMKR
                     GAYIINTARGKIVDRDAVVRALESGQLAGYAGDVWFPQPAPSDHPWRTMPHQGMTPHT
                     SGTTLSAQARYAAGTREILECWFAKEPIREEYLIVDGGRLAGVGAHSYSAGNATSGSE
                     EAARFKKA"
BASE COUNT          342 a          502 c          534 g          345 t
ORIGIN      
        1 cgcttttatt gccggagttg acgcgcggca ttggtcttat cgcgcgcaat cgcaatccgc
       61 tgccgcctct tgttgccgcc atatggaaag cggccgagca gcttgatttg caacgggagt
      121 tcgacgcatt gctgcccgag gctgcccgca tttcgcaggg cgctgcgacc gtctaaggtg
      181 ccacgcccgc agccttctgc gagcggctgg ccgtcgtgat aagaagcgct tatcacctga
      241 tccatccaaa cgattggacc ctctgcacgc acttggagac actgtcctgc gtcgacgtgc
      301 cagccccacg tttcgaccaa ggcggcgccg ggacgtcggc gccagtgtta ttcaaatcag
      361 agtggagtga gacagtcatg gccaaggttc tatgcgtttt atatgacgac cccgtcgacg
      421 gtatgccgaa gaagtacgcc cgggacgaca ttcccgccat cacgaagtat cacgacggac
      481 aaagcgcccc gacaccgaag gcaattgact tcaacccggg cgagttgcta ggcagcgtgt
      541 ccggcgagct gggcttgcgc aagttcctcg aatcgcaggg acataccctg gttgtcacgt
      601 ctgacaagga tggccccaac tccacgttcg agcgtgaact ggaagatgcg gagatcgtca
      661 tttcgcagcc gttctggccg gcgtatctga cggccgagcg gatcgcccgg gcgccgaaac
      721 tcaagctcgc gctgaccgca gggattggct cggatcacgt cgatctgcaa gcagcgatcg
      781 atcgcggcat cacggtagct gaagtgacgt tctgcaacag catcagcgtg gccgagcatg
      841 ttgtcatgat gatcctgtcg caggttcgga attatctgcc atcgcatgaa tgggtcaaga
      901 agggtggctg gaacatcgcg gattgcgtct cgcgtgcgta cgatcttgaa gggatgaatg
      961 tgggtaccgt agcggctggg cggattggcg cggcagtgct gcgccggctc aaacctttcg
     1021 acgtcaagct gcactatacg gatcggcatc gtctgccgga agcggtcgag cgcgagcttg
     1081 gcgccacctg gcaccccact gctgaatcga tggcgcgtgt ctgcgatatc gtgaccatca
     1141 attgtccgtt gcaccccgaa acggagcacc ttttcgacga gaagatgatc agcaagatga
     1201 agcgcggtgc gtacatcatc aacacggcac gcgggaagat tgtggatcgc gacgccgttg
     1261 tgcgtgcgtt ggaatccggc caactcgcgg gctatgcagg cgatgtctgg ttccctcagc
     1321 cggctccgag cgatcatccg tggcggacca tgccgcatca gggtatgacg ccgcatacgt
     1381 caggcacgac gctttccgct caggctcgtt acgcggcagg cacgcgcgag attctcgagt
     1441 gctggttcgc caaggaaccc attcgcgaag agtatctgat cgtcgatggc ggacgtctcg
     1501 ccggcgtggg cgcgcattca tacagcgcag gcaatgcgac ctcgggctcg gaagaggcag
     1561 cccgcttcaa gaaggcttga cgccgtgggc acgctggtcc ggctgttgag ggtcagcgtg
     1621 cgcatttcca taggctttaa acactatgaa cgaacagatc gcccgcgcgg cgcctgcaat
     1681 tcctttagcg ccgtataaac aagcggcatt cggtttctta ggt
//
LOCUS       DATGBK010000999         1648 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_220450, whole
            genome shotgun sequence.
ACCESSION   DATGBK010000999 DATGBK010000000
VERSION     DATGBK010000999.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220450"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1409
                     /locus_tag="VKJ77_13940"
     CDS             <1..1409
                     /locus_tag="VKJ77_13940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HMC46419.1"
                     /translation="NASEFSPYIGMTREQAVDALLAGARTEAATPPPAWVTEPIPSVD
                     VRRAWTQDERRDDQREQSRRYDELRGWWVREMVTTRSPLTERMTLFWHDHFPSGEDKV
                     HYPRLMFRQNALLRRDSLGNFGDLLHAVSKDPAMLQYLDGAGSRKGRPNENFAREVME
                     LFTLGEGHYSQRDVTEAARAYTGWTLDPNTLAYQFNPKIHDDGDKTVLGQMGDFDGDQ
                     VLDILLAQPETATFITTELWREFISETPDPAQIAPIAERFRASHYDIKTALRGLFLSE
                     AFWDERNRGVLVKSPAEFVVGAVREFDIGYADQDATALAVQVRNFGENLFYPPNVKGW
                     PGGENWINSSTLLARKQFIEQLFRATEAHGMRPAATNGKTSAMSGSMSAPMPNLMTNA
                     SMKPAVMQQPHPGLRFDLDAWLARYNTTPDARPDLSTQLQLQRAVLAVSPADAIEPDV
                     TSSAYLRVLLMDPAYQLK"
     gene            1418..>1648
                     /locus_tag="VKJ77_13945"
     CDS             1418..>1648
                     /locus_tag="VKJ77_13945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011549600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Twin-arginine translocation pathway signal
                     sequence domain-containing protein"
                     /protein_id="HMC46420.1"
                     /translation="MNRRDFLSMTGAAGAFALAPSAFAAASPLPAEMRSSGYGNVLIL
                     VELKGGNDGLNTVIPFADPAYAALRPGIGIKRE"
BASE COUNT          330 a          526 c          484 g          308 t
ORIGIN      
        1 cgaacgcgag cgagttttcc ccgtacattg ggatgacccg cgagcaggcc gttgacgcgt
       61 tgcttgccgg cgcccgcact gaagccgcta caccaccgcc cgcgtgggtc acggagccga
      121 tcccatcggt cgacgttcgc cgtgcatgga cgcaggacga acgtcgtgac gaccagcgcg
      181 aacaaagccg tcgctacgat gagttgcgcg gctggtgggt acgggaaatg gtgaccacgc
      241 gctcgccgct caccgagcgc atgacgctct tctggcacga tcactttccg tccggcgaag
      301 acaaggttca ctatccgcgg ctcatgttcc gccagaacgc gctgctgcgc cgcgactcgc
      361 tcggcaattt cggcgacttg ctgcatgcgg tctcgaaaga tccggccatg cttcaatacc
      421 tcgatggtgc cggcagccgc aaaggccgtc ccaacgaaaa tttcgcacgc gaggtcatgg
      481 agttgttcac gctcggcgag ggacattact cgcagcgtga cgtgaccgaa gccgcaaggg
      541 cctacaccgg ttggacgctc gatccgaata cactcgccta tcaattcaat ccaaagatcc
      601 acgacgacgg cgacaagacc gtcctcggcc agatgggcga tttcgacggc gatcaggttc
      661 tcgatatcct tttagctcaa ccggaaacgg cgaccttcat cacaaccgaa ctgtggcgtg
      721 agttcatctc cgagacaccg gacccggctc agatcgcacc gatcgccgaa cgttttcgcg
      781 cgtcgcatta cgacatcaag acggcgttgc ggggactgtt tttatcggag gcgttctggg
      841 atgagcgcaa ccggggcgtg ctggtcaagt cgcccgcgga attcgtggtc ggcgctgtgc
      901 gcgaattcga tatcggttat gccgatcaag acgcgaccgc gctcgctgtc caggtgcgca
      961 atttcggtga gaatcttttt tatcccccga acgtgaaggg ctggccgggc ggtgaaaact
     1021 ggatcaacag ctccacgctg cttgcgcgca agcagttcat cgaacagttg ttccgcgcga
     1081 cagaagcgca tggcatgcgc ccggcggcaa ccaatgggaa gacaagcgcg atgtcaggct
     1141 ccatgtcagc tccaatgccc aacttgatga ccaacgcctc gatgaaacct gcagtgatgc
     1201 aacagccgca tcccggcttg cgtttcgatc tcgatgcatg gctcgcgaga tacaacacga
     1261 cgcctgacgc gcgcccggac ctgtcgacgc aattgcaatt gcagcgtgca gtgctggcgg
     1321 tctctcccgc cgacgccatc gaacccgacg tcaccagcag cgcttatctg cgggtcttgc
     1381 tgatggaccc tgcgtatcag ttgaaatagg cgaccccatg aaccgacgcg acttcctttc
     1441 gatgaccggc gcagccggcg ccttcgcgct tgcgccctcg gcatttgccg cagcgagccc
     1501 gcttccagcc gagatgcgtt cgagcggata cggcaatgtg ctgatcctgg tcgaactgaa
     1561 gggcggcaac gacggcttga acaccgtcat cccattcgcc gacccggctt acgccgcatt
     1621 gcgcccgggc atcggcatca agcgcgaa
//
LOCUS       DATGBK010001000         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_35697, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001000 DATGBK010000000
VERSION     DATGBK010001000.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35697"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..674)
                     /locus_tag="VKJ77_13950"
     CDS             complement(<1..674)
                     /locus_tag="VKJ77_13950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HMC46421.1"
                     /translation="MNRPPDFPEAVAAPRSRWRVQLVWLVPLVAILIGGWLAVQSILE
                     KGPTITISFDSGEGLEAGKTKIKFKNVDIGVIKKVVLSPDHKRVIASAEVNRDATNML
                     VDDTRFWVVRPRISGGTVSGIGTLLSGSFIGMDIGTASESRRDFVGLESPPVFATGVP
                     GREFVLKSENMGSLDIGSPVFYRRLQVGQITSYALDPDGAGMTLHVFVNAPYDKYVSD
                     NTRFWHA"
     gene            complement(667..>1709)
                     /locus_tag="VKJ77_13955"
     CDS             complement(667..>1709)
                     /locus_tag="VKJ77_13955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011518583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HMC46422.1"
                     /translation="RILYDDGVWPLAGLVFVTTLLMPLLDMAAVTYVLLPLRSGHVPR
                     RPDIVLRVLRRVTPWGMIEVLILGMLVALVKLAAIATVVPGIAMLAFGAVMLLLAAAA
                     AAFDHHDIWTRIDIARSVASVPAAPVEPVVPVAQTSASAPTAARAGLFVCHDCGLLSK
                     PASHAHEGRCPRCGSHLHFRKPGSIARTWAFVIAAIVLYIPANMLPVMDTSSLFGAQT
                     DTILSGVVYLWTSGSWPLAAIVFIASIAVPMLKIIALVFLVLTAQLRWRWLPERRTRI
                     YRVVELVGRWSMLDIYVITILVALVQFNALATIKAGPGAIAFGAVVVLTMFAAMSFDP
                     RLIWDAMEPEHE"
BASE COUNT          361 a          545 c          547 g          256 t
ORIGIN      
        1 gcgtgccaga agcgggtatt gtccgacacg tatttgtcgt agggcgcgtt gacgaagacg
       61 tgcagcgtca tgccggcgcc gtcggggtcg agtgcataag aggtgatctg gccgacctgc
      121 agccgccggt aaaacaccgg cgagccgata tcaagcgaac ccatgttctc gctcttgagg
      181 acgaactccc gccccggcac accggtcgcg aataccggcg gcgactccag cccgacgaaa
      241 tcgcggcggg actcgctcgc ggtaccaatg tccatgccaa tgaacgagcc tgacagcagc
      301 gtaccaatac ccgacaccgt gccgccggat atgcgcgggc gcacgaccca gaagcgggta
      361 tcgtcgacca gcatgttcgt ggcgtcgcgg ttcacttcgg cactggctat gacccgtttg
      421 tgatcaggcg acaagacgac cttcttgatc acgccgatat ccacgttctt gaattttatc
      481 ttggtcttgc ccgcttccag gccttcgccg ctgtcaaagc tgatggtgat ggtcggacct
      541 ttctcgagga tcgactgcac cgcgagccag ccgccgatca atatcgccac cagcggcacc
      601 agccagacaa gctgcacacg ccagcgcgag cggggagcag cgaccgcttc ggggaaatcg
      661 ggcggcctat tcatgctcag gctccatggc gtcccagatg agacgcgggt cgaacgacat
      721 cgcggcgaac atcgtcagca cgaccaccgc gccgaacgcg atagcgcccg gtcccgcctt
      781 gatcgtcgcg agcgcgttga actgcacgag agcgaccagg atggtgatga cgtagatatc
      841 gagcatcgac cagcggccga ccagttccac cacccgatag atgcgcgtgc gtctctcggg
      901 cagccagcgc cagcgcagtt gcgccgtcag gacgagaaag acaagcgcga tgatcttgag
      961 catgggcacc gcgatgctcg cgatgaaaac gatggccgca agcggccatg agcccgaggt
     1021 ccagaggtac accacgccgc tcaggatcgt gtccgtttgc gcgccgaaga gcgaactcgt
     1081 gtccatcacg ggcagcatgt tggcggggat gtagagaacg atggcggcaa tgacgaatgc
     1141 ccaggtgcgt gcaatgctgc cgggcttccg gaaatgcaga tgcgacccgc aacgcgggca
     1201 gcggccttcg tgggcatgcg atgccggttt cgacaacaag ccgcagtcgt ggcaaacgaa
     1261 caggccggcg cgggcggccg tgggcgccga ggcgctggtc tgggcgaccg gcacaaccgg
     1321 ctcaaccggc gcagcgggca cactagccac gctccgcgcg atgtcgatgc gagtccagat
     1381 atcgtgatga tcgaaggcgg ccgcagccgc ggcaagcagc aacatcaccg cgccgaacgc
     1441 caacatggca atgccgggga ccacggttgc gatagccgcg agcttgacga gcgcaaccag
     1501 catcccgagg atcagcactt cgatcatgcc ccatggcgtc acacgacgca gcacgcgcaa
     1561 cacgatatcg ggccggcgcg ggacgtgtcc tgagcgcaga ggcaaaagca catacgttac
     1621 cgctgccatg tcgagcagcg gcatgagcag cgtcgtgacg aacacgaggc ccgcgagcgg
     1681 ccacaccccg tcgtcgtaca ggatgcgag
//
LOCUS       DATGBK010001001         3673 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_104401, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001001 DATGBK010000000
VERSION     DATGBK010001001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3673
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104401"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..785
                     /locus_tag="VKJ77_13960"
     CDS             <1..785
                     /locus_tag="VKJ77_13960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucosidase"
                     /protein_id="HMC46423.1"
                     /translation="AVHVLEERVYGHLPGLRERLAWFLDHRPNLAKLVSRWTELGKGN
                     TTLLSLLRGHRTKALLRRALDEDEFLSGHGLRALSRVHRDAPYLFDHDGVNFCIKYEP
                     AESDSRAFGGNSNWRGPVWIPVNYLLIESLYEFYRYYGDEFRVEYPTGSGKCFSLSEI
                     ADDLARRVTTLFLKDAEGVRPVMAAYPMLQADLRSQDLILFHEYFHGDNGRGVGASHQ
                     TGWSGLVALLLQPRTMKLSHVAPDAGSMGAPVAERTAPAMAR"
     gene            complement(977..1354)
                     /locus_tag="VKJ77_13965"
                     /pseudo
     CDS             complement(977..1354)
                     /locus_tag="VKJ77_13965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588803.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
     gene            1370..1720
                     /locus_tag="VKJ77_13970"
     CDS             1370..1720
                     /locus_tag="VKJ77_13970"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HMC46424.1"
                     /translation="MTYSLYYSPGAASMAVHWMLIEMVIPFDARLIDIDVGAQRTDEY
                     RRLNPSGRVPTLVVDGVARGESGSLLMLLAEHHPVAVLAPAPGSSDRAEWLVNAREGL
                     TDWSNSAHSANDNV"
     gene            1993..3300
                     /locus_tag="VKJ77_13975"
     CDS             1993..3300
                     /locus_tag="VKJ77_13975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HMC46425.1"
                     /translation="MNRKNGAAIWILVAMLLGIGIGYMIYTSFPDRKAATEIAGYISL
                     ISDVFLRLIKMVIGPLVFSTLVVGIAHMGDAASVGRVFAKALGWFVTASLVSLLLGLL
                     MSNLLRPGENLGLPLPDIGASANLATSKFTLKDFVGHMVPRSFAESMANNEILQIVVF
                     SMFFGVALAALGDKAKILVGAIDQLAHVMLKITGYVMKLAPLAVLAAMASTVAVNGLG
                     ILLKFAVFMGDFYLSLFLLWGLLALAGLLFLGPRVFKLLALIREAFMLSFATASSEAA
                     YPKILDALDRFGVKRKISAFVMPMGYSFNLDGSMMYCTFASLFIAQAYNMHLSLTTQL
                     TMLLVLMMTSKGMAGVPRASLVVIAATLNQFGIPEAGLLLILGVDTFLDMGRSATNAV
                     GNSIASAVVAKWEGELMSETEADANAARIEAELEATIAHPIET"
     gene            3314..>3673
                     /locus_tag="VKJ77_13980"
     CDS             3314..>3673
                     /locus_tag="VKJ77_13980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46426.1"
                     /translation="MRMRRFLSMLVIAGLLVAGASARAQEDAQPSRAAPDGLAPNAPA
                     VLAGTLSKVRSSGTIALGYREASIPFSYLNARNEPIGYSIELCKALVSAIGDAVDRTL
                     TIKWVPVTPDNRIDAVVS"
BASE COUNT          637 a         1125 c         1152 g          759 t
ORIGIN      
        1 tcgccgttca cgtgctcgag gagcgggtgt acggccattt gccgggattg cgcgaacggc
       61 tggcgtggtt tcttgatcat cgcccgaatc tggcaaagct ggtgtcgcgc tggaccgaac
      121 tcggcaaagg caacaccacg ctgctgtcat tgttgcgcgg acaccggacg aaagcgctgt
      181 tgcgccgcgc gctcgatgaa gacgaatttc tctccgggca cggcttgcgg gcgctgtcgc
      241 gtgtgcatcg cgatgcaccg tacctcttcg accatgacgg cgtgaacttc tgcatcaaat
      301 acgaaccagc cgaatcggac tcgcgtgcgt tcggcggcaa ttcaaactgg cgagggccgg
      361 tctggatacc ggtcaattac ctgctgatcg aatcgctgta tgagttctat cgctactacg
      421 gcgatgagtt tcgcgtcgaa tatccgacag gatcgggcaa gtgtttttcg ctgagcgaga
      481 ttgccgacga cctcgcacgg cgcgtcacta cgctctttct caaggatgca gaaggcgtgc
      541 ggcccgtgat ggcggcctat ccgatgctgc aagccgacct gcgttcgcag gatctcatac
      601 tgttccatga gtactttcac ggcgacaacg gacgcggcgt cggcgcttcg catcagaccg
      661 gctggagcgg gctagtcgcg ctgctgctcc agccgcgcac gatgaagctg tcccatgtcg
      721 cgcctgatgc tgggtcgatg ggcgcgccag tggccgaacg caccgcaccg gccatggcgc
      781 ggtagcgttt cggctgctgg atggctactg ccgcacaatg agcgatgaac tgttcgagcc
      841 cgtggtcgcg ccaaatcgag ggcagggccg cgcccgcggt ctacgtttgg gccggccggc
      901 ccgggtgcgc cacggccaac gagctttcga ctggccacgg cgcgaacagg attgcgtcaa
      961 tcgggctact caacgcttaa tcgccggcct ggactgcgtt gatgagattg ttgcgcagcg
     1021 tcacgatagc cttctgcact ttcgcgaact cgtccggcgc gaggcccgtc gcgtcggtga
     1081 ggtccatctt tagggctttt tcgcgcagcc gtcgaccggt tttcgtgaga ctgacccgca
     1141 cttggcgctc gtcttcggga tcgcgctgcc tttccagata acccatcgcc tcgagcttct
     1201 tcagcatcgg cgtaagcgtg ttggattcga gaaacagctt ctcgcccaga ccgctgacgg
     1261 tctggttgtc ttcctcccac agcgcaatga tcgtgacgta ttgcgtatac gtgagcccaa
     1321 gctcttcgag gatcggcttg tatgctttgc cgaactacag tgctgatcta tgacttacag
     1381 tctctattac tcgccgggtg ccgcgagcat ggcggtccat tggatgttga tcgagatggt
     1441 gatcccgttc gacgcccgac tgatcgacat tgacgtaggt gcccagcgga ccgatgaata
     1501 tcggcgcttg aatccctcag gcagggtccc cacactcgtc gttgacggtg tggctcgcgg
     1561 cgaatcagga tcgctgctta tgttgctggc cgagcaccat cccgttgcag ttctcgcacc
     1621 ggcacctggc tcttcggatc gcgcggagtg gctggtaaac gcgagggaag gcctcaccga
     1681 ctggtccaat tcggcacata gcgctaacga caacgtttga aacgatttga accgcccccg
     1741 gcagtctcga actttcgtta ggctgcgtgc ggcctggaag gacattcgcc cttgtgacga
     1801 gaatcgatga cagtcactcg tggaggatcg gttcaggcgg ccaaggaatc gaactgcgca
     1861 ggtgcgacgt catttttgtt cagacacact gacgccgaag gacgacaatg gcgtcagcgg
     1921 aggaggcaag tcgcggcttg catgatcgac gctccgtgcg ccaccacaca tgcagtgaat
     1981 ggaggcttcg aaatgaaccg aaagaatggc gcagccatct ggatcctggt cgcgatgctg
     2041 ttggggatcg ggatcggtta catgatctac acgagcttcc cggaccggaa ggccgccacc
     2101 gagattgcgg gctacatctc gctcatatcc gacgtcttcc tgcggctgat caagatggtg
     2161 atcggcccgc tcgtcttctc gacgctcgtc gtcggcatcg cgcacatggg cgacgcggcc
     2221 tcggtcggac gcgtgttcgc caaagcgctc ggctggttcg tcacggcgtc gctcgtatcg
     2281 ctgctgctcg gtctcctgat gtccaatctg ctcaggcccg gcgaaaatct cggactgccg
     2341 ctgcccgaca tcggcgcatc cgcgaacctg gcgacctcca agttcacgct caaggacttc
     2401 gtcggtcaca tggtcccgag gtcgttcgcg gaatcgatgg cgaataacga gatcctgcag
     2461 atcgtcgtgt tctcgatgtt cttcggcgtc gcgctggcgg cgctcggcga caaagccaaa
     2521 attctcgtgg gcgcgatcga ccagcttgcg cacgtcatgc tcaagatcac cggctacgtg
     2581 atgaagctcg ccccgctcgc ggtgctggcg gcgatggcct ccaccgtcgc ggtcaacggg
     2641 ctgggcatcc tgttgaagtt cgcggtcttc atgggcgact tctacctcag cctgttcctg
     2701 ctgtggggct tgctcgcatt ggcgggcctg ctgttcctcg ggccgcgcgt gttcaaactg
     2761 ctcgcgctga tcagggaggc cttcatgctg tcgttcgcga ccgcgagttc ggaagccgcg
     2821 tatccgaaga tcctcgacgc gctcgatcgt ttcggcgtga agcgcaagat ctctgccttc
     2881 gtgatgccga tggggtactc gttcaacctc gacggctcga tgatgtattg cacgttcgca
     2941 tcgttgttca tcgcgcaggc gtacaacatg cacctctcgc tgaccaccca gctgaccatg
     3001 ctgctggtcc tgatgatgac ctccaagggc atggccggcg tgccgcgcgc gtcgctggtg
     3061 gtgatcgccg ccacactcaa ccagttcggc attcccgagg ccgggctgct gctgatcctc
     3121 ggcgtcgata cgtttctcga catgggccgt tccgccacga acgcggtggg caactcgatc
     3181 gcgagcgcgg tggtcgccaa gtgggaaggc gaactgatgt cggaaaccga ggccgacgcc
     3241 aatgcggcgc gcatcgaagc cgagctcgaa gcgacgatcg cccatccgat agaaacctga
     3301 cgaggaccga gccatgagga tgcggcgatt cctgtcgatg ctggtcatcg cggggctgct
     3361 ggtggccggt gcctcggccc gcgcgcaaga ggacgcgcag ccgtctcggg cggcgccaga
     3421 tggcctcgcg ccgaacgcgc cggccgtgct ggctggcacg ctgtccaagg tgcgaagctc
     3481 gggcaccatc gcgctcggct accgcgaggc gtcgataccg ttttcctatc tgaacgcgcg
     3541 caatgagccc atcggttatt cgatcgagct atgcaaggca ctggtgtcgg caatcggcga
     3601 cgccgtcgac cggacgctga ccatcaagtg ggtgccggtc acgccggaca accgcatcga
     3661 cgcggtggtg agc
//
LOCUS       DATGBK010001002         1726 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_289931, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001002 DATGBK010000000
VERSION     DATGBK010001002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289931"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..545)
                     /locus_tag="VKJ77_13985"
     CDS             complement(<1..545)
                     /locus_tag="VKJ77_13985"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009341 - beta-galactosidase complex
                     [Evidence IEA];
                     GO_function: GO:0004565 - beta-galactosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HMC46427.1"
                     /translation="MRLGVCYYPEHWPESMWKDDAARMKALGIDRVRIAEFAWSRIEP
                     APGEYNWDWLDRAIDVLADAGLKVVMCTPTATPPKWLIDRHPDILPIGADGRPRAFGS
                     RRHYDFSSPSFFEASQKICTAVAERYGKHPAVAFWQTDNEFGCHNTVVSYSPAALQRF
                     RGWLKQRYGTIDALNTAWGTV"
     gene            complement(557..1699)
                     /gene="ugpC"
                     /locus_tag="VKJ77_13990"
     CDS             complement(557..1699)
                     /gene="ugpC"
                     /locus_tag="VKJ77_13990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HMC46428.1"
                     /translation="MASISLRSVQKAYGDHALVIRDVDLEIGEHEFCVFLGPSGCGKS
                     TLLRMIAGLEDISDGDLYIDGKLVNDVPAAQRGVAMVFQSYALFPHMTVYQNMAFGLT
                     LAKTPKDVIDQKVKEAARVLQLEALLERRPKELSGGQRQRVAIGRAIVRSPSVFLFDE
                     PLSNLDATLRGQTRVEIARLHKQFNTASVVYVTHDQIEAMTLADKIVLLHAGADTAKY
                     GSIAQVGAPLELYHRPKSRFVAGFIGSPRMNFLPARVVLGSAESVSIVLDGTNERVDV
                     HANGEALRPDQAVTLGIRPEHLEPAASAGSTQQISRTVSLVEQLGEHSYLHLDQPGGA
                     VLIAKAPGDKTPRQGESVVFNVPPASCHLFTEDGFAVTSAAIQQFA"
BASE COUNT          334 a          523 c          518 g          351 t
ORIGIN      
        1 aagaccgtgc cccatgcggt attgagcgcg tcgatggtgc cgtagcgctg cttcagccat
       61 cctcgaaagc gctgcaacgc ggccggtgaa tagctgacca cggtgttgtg gcagccgaat
      121 tcattgtctg tttgccagaa cgccacggca ggatgcttgc cgtaacgttc ggccactgcc
      181 gtgcaaattt tctgcgacgc ctcgaagaac gaaggcgacg aaaaatcgta atgccggcgc
      241 gagccgaacg cacgcggacg gccatcggcg ccaatgggca aaatgtcggg atgacgatcg
      301 atcaaccact tcggcggcgt cgcggtcggc gtgcacatga cgaccttcag gcccgcgtcg
      361 gcgagcacat cgattgcgcg atccagccag tcccagttgt attcacctgg cgctggttcg
      421 atccggctcc acgcaaattc cgcaatccgg acgcggtcga tgcccaacgc tttcatgcgc
      481 gccgcatcgt ctttccacat cgattcgggc cagtgttccg ggtaataaca gactccaaga
      541 cgcatatggt gcgctcctac gcaaattgtt gaatggcagc cgatgtgacg gcgaagccgt
      601 cctcggtgaa gagatgacac gacgcaggcg gcacgttaaa aaccacgctc tcgccctgcc
      661 gtggcgtctt gtcgccgggt gccttggcga tcagcaccgc gccgcccggt tgatcgagat
      721 gcagatagct gtgctcgccg agttgttcga ccagtgacac cgtgcggctg atttgttgag
      781 tagatccggc gcttgcggct ggctctagat gctcgggacg aatgccgagc gtgacggcct
      841 gatcgggccg caaggcctcg ccgttagcgt ggacatcaac ccgctcgttc gttccatcga
      901 ggacaatcga cacgctttcc gcgctgccca atacgacccg cgcaggcagg aagttcatcc
      961 gcggcgagcc gataaaccct gcaacaaagc ggcttttcgg ccggtgatat aactcgagcg
     1021 gtgcacccac ttgcgcaatg ctgccgtact tcgccgtgtc cgcgcctgca tgcagcagga
     1081 cgatcttgtc ggcgagcgtc atggcttcaa tctggtcatg agtgacgtag acaacgctgg
     1141 cggtattgaa ctgcttgtgc aggcgcgcga tctcgacccg cgtttggccg cgcaatgttg
     1201 cgtcgagatt ggagagcggt tcatcgaaga gaaacacgct cggactccga acgatagccc
     1261 ggccgattgc cacacgttgc cgttggccgc cggacaactc cttcggcctg cgttcaagca
     1321 gcgcttcgag ttgcagcacg cgagccgctt ccttcacttt ctggtcgatc acgtccttcg
     1381 gtgtcttcgc gagcgtcagg ccgaacgcca tgttctggta gacggtcatg tgcgggaaga
     1441 gcgcgtagct ctggaacacc atcgcgacgc cgcgctgtgc agctggaaca tcgttgacga
     1501 gttttccgtc gatatacagg tcgccgtccg agatgtcttc cagacccgcg atcatgcgca
     1561 gcaaggtgga tttgccgcat ccggaagggc cgaggaatac gcagaattcg tgttcgccga
     1621 tctccagatc gacatcgcga atcacgagtg cgtgatcgcc gtacgctttt tgaaccgatc
     1681 gtaacgagat gctcgccatg ccgacgtctc cgtgttttac cgggga
//
LOCUS       DATGBK010001003         1914 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_220478, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001003 DATGBK010000000
VERSION     DATGBK010001003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220478"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            50..382
                     /locus_tag="VKJ77_13995"
                     /pseudo
     CDS             50..382
                     /locus_tag="VKJ77_13995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007740894.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
     gene            complement(536..1345)
                     /locus_tag="VKJ77_14000"
     CDS             complement(536..1345)
                     /locus_tag="VKJ77_14000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HMC46429.1"
                     /translation="MILRSYLFVPGDRPERFSKALASAAHQVVIDLEDAVMPDAKDRA
                     REHLSDWLRAGLPDSERSRVAIRVNAFGTPWHEADVAMFGASSVRNIMVPKAEEAGQL
                     ADIAVRCGDGVLLTALVETVAGVVKMREIAGERAVSRLAFGSFDYCVDAGIEGFGREL
                     DYVRSRFVIESRYAGLPAPVDGVTLDVHDTELIVQDVACGRRFGFGAKLCIHPKQVDA
                     VNRGFMPTDEERAWAARVLAALADNPRGAFAIDGKLVDKPIIDRARLIAGS"
     gene            complement(1394..>1914)
                     /locus_tag="VKJ77_14005"
     CDS             complement(1394..>1914)
                     /locus_tag="VKJ77_14005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC46430.1"
                     /translation="IGNSHFVHVPYNTFQTKDGHIIIACIGDAFFERFLAVVERPELR
                     KPEYLKQPARYADKALIEKVINEELIQQSSAYWLAKLHAARVPCGPVNDFGEALADPQ
                     VLARHMVVDVPLPDGGSVRMPGVPMKFSGASEPSFDAPPTLGEDTQSVLADLLGYNSA
                     RIDALRLTRVIQ"
BASE COUNT          412 a          585 c          533 g          384 t
ORIGIN      
        1 agtcggcggt agaatgaagt gatgaagaaa acgaaatcgc tctatcacgg tcgtcacgga
       61 tcagttgcgc agctatccgg cggcgaaggc tgaaattccc gagctcgctc atgtgaagca
      121 cgttttcgtc aaagcggccg cacgcgtgaa caaccgtgcc gagaacagcc actagccgac
      181 ccgcaggcgt gaacgccaga tgtgcggctt tcgcgatgcg cgtcgcacgc aggcttttct
      241 ttcatgctta ggcccaatcc ggcaacactt cgcattgccc agacatcaaa tgaacgcggc
      301 atgtcatcgt gctattctca aaaaacgctt cgccacgtgg catggttgga ctattactgg
      361 cgcggtcgaa aaaattatct gataaggata actactcttt tattcacagg taatctacgc
      421 tcgccaagtt gacagagccc taccagggcg tccgtgaagg gaacggcaaa accttggggc
      481 gaccgagcgg ctaccccaag gtttttctgc gctctcgcat gatccttcca gatcatcaac
      541 tacctgcgat tagtctggct ctatcaatga tcggcttatc gacaagtttt ccgtcgatgg
      601 cgaaagcacc tcgcggattg tctgcgagcg cggccagcac acgagccgcc catgcacgct
      661 cctcgtcggt tggcatgaat ccccgattta ctgcgtccac ttgctttgga tgaatgcaca
      721 gcttggcgcc gaagccgaag cggcggccgc acgcaacgtc ctgcactatc aactcagtgt
      781 cgtggacatc gagggtcaca ccgtccaccg gcgccggcag accggcatag cgcgactcaa
      841 tgacgaaacg cgagcggacg tagtccagct ctctcccgaa cccttcgata cccgcgtcga
      901 cgcaatagtc aaaggaacca aacgcgagtc gtgagacggc tcgttcaccg gcgatttcac
      961 gcatcttcac cacgccggcg acagtctcca ctagtgcggt cagtaagaca ccgtcgccgc
     1021 aacggaccgc aatgtcggca agctgtcccg cctcttcggc tttggggacc atgatgttac
     1081 gaactgacga cgcgccgaac atcgctacat ctgcctcatg ccatggagtc ccgaacgcgt
     1141 tgacccggat cgcgacacgc gagcgttcgg agtcgggcag tccggcgcgc agccaatccg
     1201 agagatgttc ccgcgcgcgg tccttcgcat cgggcattac tgcgtcttca agatcgatca
     1261 ccacttggtg agcggcgctc gcaagggcct tcgaaaaacg ctcgggacga tcgcccggca
     1321 cgaacaggta actacgtaaa atcatggggg tctctcaatt ccagattgtt tggaaagctg
     1381 cgccatgccg gcgtcattgg atcacgcgag tcagtctcag cgcatcgatg cgcgcggagt
     1441 tgtagccgag caagtcggcc aaaaccgatt gcgtgtcctc gccgagcgtc ggcggcgcat
     1501 cgaagcttgg ctcgctcgcg cctgagaatt tcatcggtac gccgggcata cggacgctac
     1561 cgccgtccgg cagcgggacg tccacgacca tgtggcgcgc gagtacctgt gggtctgcaa
     1621 gcgcttcgcc aaagtcgttg actggcccac atggaacccg tgcagcatgc agtttggcca
     1681 accaatacgc cgaggattgc tggatcagct cttcgttgat caccttctca atcagcgctt
     1741 tgtcggcgta tctcgccggc tgcttgagat actcgggctt gcgcagctcc ggacgttcca
     1801 ccaccgcgag aaagcgttca aagaacgcat cgcctatgca ggcaatgatg atgtgcccat
     1861 ccttcgtctg gaacgtgttg tacggcacgt gcacgaagtg cgagttaccg atcc
//
LOCUS       DATGBK010001004         1997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_104421, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001004 DATGBK010000000
VERSION     DATGBK010001004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104421"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..875
                     /locus_tag="VKJ77_14010"
     CDS             <1..875
                     /locus_tag="VKJ77_14010"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006400200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HMC46431.1"
                     /translation="FRNPVGLAAGLDKDGACIDGLASLGFGFIEVGTVTPRAQPGNPR
                     PRMFRLPDAQALINRLGFNNRGVDQFVENVKAARYRGVLGLNIGKNADTPIERAAEDY
                     LYCLERVYPFASYVTINISSPNTKNLRQLQGAGELDALLGALKDKQQRLSDMHGKLVP
                     LALKIAPDLDDEQVKEIAATLLRHKIDGVIATNTTLSRTAVTGMKHGDEAGGLSGKPV
                     FEASNAVIRKLRAELGSEVPIIGVGGIMSGDDAREKLAAGASLVQIYTGLIYRGPALV
                     TECVEALARTSAVA"
     gene            1006..1797
                     /locus_tag="VKJ77_14015"
     CDS             1006..1797
                     /locus_tag="VKJ77_14015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011884668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC46432.1"
                     /translation="MKLSLFKKVLVAGLIGASLSAVAHAEDLLDSVKQRGTLRIGLEG
                     TFPPFNSKTPQGELVGFDVDIAKAVAAKLGVKPEFVTTEWSGIIAGLQADKFDVIVNQ
                     VGITDARKQTLDFSPAYTYSNAQLIQRKDDTRDFKTLEDLKGKKLGVGLGTNYMDMAK
                     AVPGIDVKTYPGAPEYLRDLASNRLDAALNDRLMLAYLMKNSQLPLRTGANVGPGNPS
                     GIPFKKGNPKFEKAIDDAMTQLEADGTFTKISDKWFGIDVTKPAK"
     gene            1912..>1997
                     /locus_tag="VKJ77_14020"
     CDS             1912..>1997
                     /locus_tag="VKJ77_14020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46433.1"
                     /translation="MSTTSLLVQSIPALAQGAVLTIKFAVYS"
BASE COUNT          422 a          590 c          598 g          387 t
ORIGIN      
        1 gctttcgcaa tccggtcggg ctcgcggcgg ggctggacaa agacggtgcc tgtatcgacg
       61 gactggcgtc gctcgggttt ggattcatcg aagtaggaac ggtcacgccg cgcgcgcagc
      121 ccggtaaccc gcgcccgcgc atgtttcgcc tgcccgacgc acaggcgctg atcaaccggc
      181 tcgggttcaa caaccgcggt gtcgatcagt tcgtcgagaa cgtcaaggct gcgcgatatc
      241 gcggcgtgct ggggctgaat atcggcaaga acgcggatac ccccatcgaa cgcgccgccg
      301 aagattattt gtattgcctc gagcgtgtct acccgttcgc gagctacgtg acgatcaaca
      361 tctcgtcgcc gaatacgaaa aacctgcgcc agttgcaagg cgcgggcgaa ctcgacgcgc
      421 tgctcggcgc gctgaaggac aaacaacaac gtctgtccga catgcacggc aagcttgtgc
      481 ccctcgcgct gaagatcgcc cccgatctcg acgacgagca ggtcaaggag attgccgcca
      541 ccttgctgcg ccacaagatt gatggcgtga tcgcgaccaa caccacgctg tcgcgcaccg
      601 ctgtgacggg catgaaacac ggcgatgaag ccggtggttt gtcgggcaag ccggttttcg
      661 aagcatcgaa tgcagtgatc cgcaagttgc gcgcggagct gggcagcgag gtgccgatca
      721 tcggcgtggg cggcatcatg tcgggcgacg acgcgcgcga gaaactcgca gcgggtgcat
      781 cgctcgtgca gatctacacc ggcctgatct atcgcggccc ggcgctcgtg acggaatgcg
      841 tcgaagcgct ggcccgcacg agtgccgttg catgattggg tcttcccttt tcacaacact
      901 tggctcatac ccacatgagc aaacgatctg aagacggcat tgcgttttag ctatcatcgc
      961 cgcacttcag attactgaca aaaaccagga caaaggcaaa aactcatgaa actctctctc
     1021 ttcaagaaag tgctcgtggc aggcttgatc ggcgcatcgc tctcggccgt cgcccacgcg
     1081 gaagacctgc tggattcggt caagcaacgc ggtacgttgc gcattggcct ggaaggtact
     1141 ttccctccgt tcaattcgaa gacgccgcaa ggcgagctcg tcggcttcga cgtggatatc
     1201 gcgaaggcgg ttgccgcgaa gctcggcgtg aagccggagt tcgtgacgac cgaatggagc
     1261 gggatcattg ccggcttgca agctgacaag ttcgatgtga tcgtgaatca ggtcggcatt
     1321 accgatgccc gcaagcagac gctcgatttt tcgccggcct acacgtattc gaatgcgcaa
     1381 ctgattcagc gcaaggacga cacgcgggac ttcaagacgc ttgaagacct gaagggcaag
     1441 aagcttggcg tgggtctggg cacgaactac atggacatgg cgaaggccgt acccggtatc
     1501 gatgtgaaga cgtatccggg cgcgcctgag tacttgcgcg atctcgcttc gaaccgtctg
     1561 gacgctgcgt tgaacgaccg cctgatgctt gcgtacctga tgaagaattc gcaattgccg
     1621 ctgcgtacgg gtgcgaatgt gggcccgggc aatccgtcgg gcattccgtt caagaagggc
     1681 aatccgaagt tcgagaaagc cattgatgac gcgatgaccc agcttgaagc cgatggtacg
     1741 ttcacgaaga tctcggacaa gtggttcggt atcgacgtaa cgaagccggc gaagtaagcc
     1801 gacacagtca atcccggacc ctcaagcgtt cggcatcggg gcggcttctc aagagatgcc
     1861 gccctttgca tttgatgccc gcctccgacg ttacgcctat tcaattcctc catgtccacg
     1921 acatccctgc tcgttcaatc catcccggcc ctcgcacaag gcgccgtcct gacgatcaag
     1981 ttcgcggtct attcgat
//
LOCUS       DATGBK010001005         2584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127463, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001005 DATGBK010000000
VERSION     DATGBK010001005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127463"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..533)
                     /locus_tag="VKJ77_14025"
     CDS             complement(<1..533)
                     /locus_tag="VKJ77_14025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HMC46434.1"
                     /translation="MPHRNLKNTEEAIFDIELKLLLEAVYLKYQHDFRHYSVSSLRRR
                     LTQALHDLGFTTLSQLQERILRDATLFARLFQYLTVQVSEMFRDPPYFRAIREQVVPI
                     LQTYPSIKVWVAGCSSGEELWSLAILFAEENIADRTVLYATDINADALRQAESGIYPL
                     DRLASFSQNYLAAGGKRS"
     gene            complement(546..>2584)
                     /locus_tag="VKJ77_14030"
     CDS             complement(546..>2584)
                     /locus_tag="VKJ77_14030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC46435.1"
                     /translation="ILAKLLQDNKHGNLSDEQVRYAATIHSSNSDLLSLINDILDLSK
                     VEAGQMDVQFAPVAIDGMLQSLRQSFAPIADSKRLKLVTERAEGVPEYFVTDNQRLQQ
                     VLRNLLSNAFKFTEQGQVTVSVHKADNNENALRFDVRDTGIGIPRDKQDLIFQAFQQA
                     DGTTSRKYGGSGLGLSISREFSRLLGGSVSVSSEPGKGSVFSVTLPLAVQEGTVTAKL
                     DVIGHMSEPEHAVSEEAASVAEVQNHAPAHLAAMASAPASLEPSAWRAPHANFPAPQP
                     ISDDRANRKRPDRVILAIEDDLRFAHILHDLAHELEFDFVHATTATQGVELARTLQPN
                     GILLDVGLPDQSGLTVLEWLKHDPLTRHIPIHIVSSTDHADIALHLGAIGYTLKPSAR
                     DTLAGAIRKLEARSAQGTRRVLVVEDDPALRQSIHALLKSETVEIVEAGTIAQALEQI
                     NRTSFDCIVMDLALPDGSGYDLLEQVSTSQEHASPPVIVYTGRVLSPDEEQRLRRYSK
                     SIIIKGAKSPERLVDEVTLFLHSVESALPPEQQRMLRAARQRDDVFEGRTILLAEDDV
                     RNIFALSHVIEPLGAKLEIARNGREALDSLARHPDIDLVLMDIMMPEMDGFAAMTEIR
                     KNPDHARLPIIALTAKAMASDRQKCLEAGADDYISKPIDVDKLVSLCRVWLRQR"
BASE COUNT          484 a          817 c          781 g          502 t
ORIGIN      
        1 gagcgtttgc cgcccgccgc caagtaattc tggctgaaac tggccagccg atccagtgga
       61 taaataccgc tctcggcctg gcgcaacgcg tcggcgttga tatcggtggc gtacaaaacc
      121 gtacggtccg caatgttctc ctcagcgaac agaatcgcga gcgaccacag ttcctcgccg
      181 ctgctgcacc cggccaccca gaccttgatg gacggatacg tctgcaggat cggcacgacc
      241 tgctcgcgaa tggcgcggaa atacggcggg tcgcggaaca tctcgctgac ctgcaccgtc
      301 aggtactgaa acaggcgcgc gaacagcgtg gcgtcgcgca gaatgcgctc ctgcaattgc
      361 gacagcgtcg taaaacccag atcgtgcagc gcctgcgtca gacgccgccg cagcgaactc
      421 accgaataat ggcggaagtc gtgctgatac ttcagataaa cggcttcgag caacagcttc
      481 aactcgatgt cgaagatcgc ctcttccgta ttcttcaggt ttcgatgtgg catggcggat
      541 cttggctatc gttggcgcaa ccagacacga cacagcgaca ccagtttatc gacgtcgatc
      601 ggcttcgaaa tatagtcgtc cgcgccggct tccaggcact tctggcgatc gctcgccatc
      661 gctttcgcgg tcagcgcgat gatcggcagc cgtgcgtggt cggggttctt gcggatctcg
      721 gtcatggcgg cgaacccgtc catttccggc atcatgatgt ccatcagcac gaggtcgatg
      781 tccggatggc gtgcaagcga atccagcgcc tcgcggccat tgcgcgcgat ttccagcttc
      841 gcccccagcg gctcgatcac atgcgacaac gcgaagatat tgcggacatc gtcttcggcc
      901 agcaggatcg tgcggccctc gaatacgtcg tcacgctggc gcgccgcgcg caacatgcgc
      961 tgctgctcgg gtggcaatgc gctctccacg ctgtgcagga acaacgtcac ttcgtctacc
     1021 agacgttccg gcgacttcgc gcccttgatg atgatcgact tggaataacg gcgcagacgc
     1081 tgctcctcgt ccggtgacaa cacgcgtccc gtgtacacga tcaccggcgg cgacgcatgc
     1141 tcctgcgacg tggatacctg ttccagcaag tcgtaacccg aaccgtccgg caaggcgaga
     1201 tccatcacga tgcaatcgaa gctcgtgcgg tttatctgct ccagcgcttg tgcaatcgtc
     1261 cctgcttcca cgatctcgac cgtctcgctt ttcagcaacg cgtggatgct ctggcgcagc
     1321 gccgggtcgt cctcgaccac cagcacgcgc cgcgtgcctt gcgccgaacg cgcttcgagc
     1381 ttgcggatgg cgccggcaag cgtgtcgcgt gcgctcggtt tgagcgtgta gccaattgcg
     1441 ccgagatgca gcgcgatatc ggcatgatcc gtcgatgaga cgatgtgaat cggaatgtga
     1501 cgcgtgagcg gatcgtgctt gagccattcg agcacggtca ggcccgactg gtcgggcaag
     1561 ccgacatcaa gcaggatgcc gttcggctgc agggtgcggg ccagttccac cccttgtgtc
     1621 gcggtggtcg catgcacgaa gtcgaattcg agttcatgcg cgaggtcgtg caggatgtgc
     1681 gcgaaacgca agtcgtcttc aatcgccagg atcacgcggt ccggacgctt gcggttggcg
     1741 cggtcgtcgg aaatgggctg cggcgccggg aagttcgcat gcggcgcgcg ccaggccgac
     1801 ggttcaagag aagcaggagc cgatgccatc gccgcgaggt gcgccggcgc gtggttctgc
     1861 acctcagcaa cgctggcggc ctcctccgac acggcgtgct ccggctcgct catatgcccg
     1921 atcacgtcga gcttggcggt taccgtaccc tcctgaacgg ccagcggcag cgtgaccgaa
     1981 aacacgctgc ccttgcccgg ctcgctcgac acgctcactg aaccgcccag caaccgcgag
     2041 aattcccgcg atatcgacaa acccagaccg ctgccgccgt acttgcggct ggtcgtacca
     2101 tcggcttgct ggaaagcctg gaagatgagg tcctgcttgt cgcgcggaat gccgatgccg
     2161 gtatcgcgca catcgaagcg caacgcgttt tcgttgttgt ccgccttgtg caccgaaacc
     2221 gtcacctgcc cctgctcggt gaacttgaac gcgttcgaca acaggttgcg caggacttgc
     2281 tggagacgct ggttatcggt gacgaaatac tccggcacgc cctccgcgcg ttcggttacg
     2341 agcttcaggc gcttcgagtc tgcgatcggc gcaaaggatt gccgcaacga ctgcaacatc
     2401 ccgtcgatgg caaccggcgc gaactgcacg tccatctgcc cggcttccac cttcgacaaa
     2461 tccaggatgt cgttgatgag cgacagcagg tcgctgttcg acgaatgaat ggtcgcggcg
     2521 taacgcacct gttcgtcgga gagattgccg tgcttgttgt cctgcaaaag cttcgcgagg
     2581 atca
//
LOCUS       DATGBK010001006         3699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_312934, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001006 DATGBK010000000
VERSION     DATGBK010001006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3699
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312934"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1619)
                     /locus_tag="VKJ77_14035"
     CDS             complement(<1..1619)
                     /locus_tag="VKJ77_14035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004186960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase"
                     /protein_id="HMC46436.1"
                     /translation="MRYPNLFKPLTLNKLTLRNRIVSTAHAEVYAEPGGLPGDRYIRY
                     YEEKAKGGVGLAVCGGSSPVSIDSPQGWWKSVNLATDKVIDPLSRLAEAMHKHGAKIM
                     IQATHMGRRTAYHGEHWPHLMSPSGVREPVHRGNAKIIEVEEIKRIISDFAAAAKRVK
                     DAGMDGVEISAAHQHLIDQFWSPRTNFRTDEWGGSLENRLRFGNEVLQAVREAVGPDF
                     CVGLRMCGDEFHEDGLDHTQLKEIAQSMSESGLIDYIGVIGSGADTHNTLANCMPPMA
                     LPPEPFVHLAAGIKSVVKLPVMHAQSIRDAGQAERLLESGMIDLVGMTRAQIADPHMV
                     IKIRDGREDEIKQCVGANYCIDRQYNGLDVLCVQNAATSREETMPHVIEKSRGPKRKV
                     VVVGAGPAGLEAARVAKSRGHDVVLFEKNDYVGGQIMLAAKAPQREQMAGIVRWFDME
                     TKRLGVDRRLGVAADDKMIMAEKPDIVVLATGGSSFTQQVPAWGVADGLAVSSWDILS
                     GKVEPGKNVLVYDGVSTHAGAGVADFIASRGG"
     gene            complement(1668..2204)
                     /locus_tag="VKJ77_14040"
     CDS             complement(1668..2204)
                     /locus_tag="VKJ77_14040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5943 domain-containing protein"
                     /protein_id="HMC46437.1"
                     /translation="MQPQLPIDVDPETGVWTTDSLPMLYVPRHFFTNNHLAVEEALGR
                     DVYAKSLYTAGHKSAYHWCDKEAKQHGISGMAVFEHYLKRLSQRGWGLFSIEKSDPAA
                     STATVHLRNSSFVLAQPGKEGKLCYMFAGWFSGAMDWVNDTAPEGTKKGPKSFSIETQ
                     CAAEGHSHCVFEVTPLAA"
     gene            complement(2237..3208)
                     /locus_tag="VKJ77_14045"
     CDS             complement(2237..3208)
                     /locus_tag="VKJ77_14045"
                     /EC_number="3.4.13.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HMC46438.1"
                     /translation="MSTLHDSSIIIDGLNISKFEPSVFEDMRKGGVTAVNCTVSVWES
                     FQKTVDNIGEMRQMIREHSDILTLVRTTDDIRRAKKENKTGIIFGFQNAHAFEDNLGY
                     IETFKQLGVNVVQLCYNTQNLVGTGCYERDGGLSGFGREVIQEMNRVGIMVDLSHVGG
                     TTSSEAIAFSKKPVCYSHCCPSGLKEHPRNKSDEQLKEIVDAGGFVGVTMFAPLLKRG
                     ADATVEDYLEAIEYVVDLIGEDNVGIGTDFTQGYSTEFFDWITHDKGRYRQLTNFGKV
                     VNPEGIRTIGEFPNLTAAMERAGWSESRIKKIMGENWVRVFDSVWNV"
     gene            complement(3236..>3699)
                     /gene="glyA"
                     /locus_tag="VKJ77_14050"
     CDS             complement(3236..>3699)
                     /gene="glyA"
                     /locus_tag="VKJ77_14050"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015603909.1"
                     /note="catalyzes the reaction of glycine with
                     5,10-methylenetetrahydrofolate to form L-serine and
                     tetrahydrofolate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HMC46439.1"
                     /translation="IAGKAVAFGEALQPGFKTYIDNVLANAKALGEVLKAGGVDLVTG
                     GTDNHLLLVDLRPKGLKGNQVEHALERAGITCNKNGIPFDPEKPTVTSGVRLGTPAGT
                     TRGFGVAEFRDIGRLIVEVFDALRDHPEGHADTEHRVRREIFALCERFPIY"
BASE COUNT          706 a         1177 c         1010 g          806 t
ORIGIN      
        1 ccaccccggc tcgcgatgaa gtccgctacg cccgcgcctg catgcgtgct gacgccgtca
       61 tagaccagca cgttcttgcc cggctcgacc ttgcccgaga gtatgtccca cgagctcacg
      121 gcgagaccat cagctacgcc ccacgccggc acctgctgcg tgaacgacga tcctcccgta
      181 gccagcacga cgatgtccgg cttttcggcc atgatcatct tgtcatcggc tgccacaccc
      241 agccggcgat ccacgccgag gcgcttcgtt tccatgtcga accagcgcac gatgcccgcc
      301 atctgctcgc gctgcggcgc cttggctgcc agcatgatct ggccgccgac ataatcgttc
      361 ttctcgaaca atacgacgtc atgcccccgc gatttcgcca cacgcgcggc ttctagtccc
      421 gcaggacccg cacccacgac cacgactttg cgcttcggcc cacgcgactt ctcgatcacg
      481 tgcggcatgg tctcttcacg tgatgtggcc gcgttctgca cgcataacac gtcgagaccg
      541 ttgtactgcc ggtcgataca ataattcgca cctacgcact gcttgatctc gtcctcgcgg
      601 ccatcgcgga tcttgatgac catgtgcgga tcggcgatct gcgcacgcgt catgccgacc
      661 agatcgatca tgccgctttc aagcaggcgc tcggcttgcc cggcgtcacg aatactttgc
      721 gcatgcatca ccggcagctt caccaccgac ttgatgccag ccgcgaggtg cacgaacggc
      781 tcgggcggca gcgccatagg cggcatgcag ttcgcgagcg tgttgtgcgt gtccgcacca
      841 gaaccaatca caccgatgta gtcgatcaga cccgactccg acatcgattg cgcgatctcc
      901 ttcaactgcg tgtgatcgag gccatcttcg tggaattcat cgccgcacat acgcagtccg
      961 acgcagaaat ccggacccac cgcttcacgc acggcctgga gcacttcgtt accgaagcga
     1021 agacggtttt cgagcgagcc gccccattca tcggtacgaa aattcgtgcg cgggctccag
     1081 aactggtcga tcaaatgctg atgcgccgcc gagatttcga cgccatccat gcccgcatct
     1141 ttcacgcgct tggcagccgc cgcgaagtcg gaaatgatgc gcttgatttc ttccacttca
     1201 atgatctttg cgttaccgcg atgcactggc tcacgcacgc cggatggtga catcagatgc
     1261 ggccagtgct cgccgtgata cgcagtgcga cggcccatgt gggtcgcctg gatcatgatc
     1321 ttcgcgccgt gcttgtgcat ggcttcggcc aggcgcgaga gcggatcaat gaccttgtcg
     1381 gtcgcaagat tcaccgactt ccaccatcct tgcggactat cgatagacac cgggctcgag
     1441 ccgccgcata cggcgaggcc caccccgccc ttggcctttt cctcgtaata acggatatac
     1501 cgatcaccgg gcaaaccacc cggttccgcg tagacctccg cgtgcgcggt actgacaatt
     1561 cggttgcgca aggtcagctt gttcagcgta agaggcttga aaaggttggg gtaacgcatc
     1621 gcggtcgacc tcggatttat ctatgtacta cgctgcttta ttactcgtca cgccgccagc
     1681 ggcgtcactt cgaacacgca atgcgaatgg ccttcggccg cgcattgggt ttcgatcgaa
     1741 aacgacttcg ggcctttctt cgtgccttcc ggtgcggtgt cgttgaccca gtccatcgcg
     1801 cctgagaacc agcccgcgaa catgtagcaa agcttgccct ccttgcccgg ctgcgccagc
     1861 acgaacgacg agttacgcag atgcacggtt gccgttgaag cagccggatc gcttttttcg
     1921 atcgagaaca aaccccagcc gcgttgggac aggcgcttca ggtaatgttc aaacacggcc
     1981 atgccgctga tgccatgttg cttggcttct ttatcgcacc agtgatacgc cgacttgtgg
     2041 cccgccgtat agaggctctt cgcatacacg tcgcgaccca gtgcttcttc aaccgccagg
     2101 tggttgttcg tgaagaagtg gcgcggcaca tacagcattg gcagcgagtc ggtcgtccag
     2161 acgccggttt ccggatcgac gtcaataggc agttgcggtt gcatcttgtg ggttcctttt
     2221 tattgtgtga gccggatcag acgttccaga cgctatcgaa cacgcgaacc cagttctcgc
     2281 ccatgatctt cttgatgcgc gactcactcc agccggcgcg ttccatcgca gcggtcaggt
     2341 tcgggaattc accgatcgtt cggatacctt ctggatttac gaccttccca aagttcgtca
     2401 gttgacgata acgacccttg tcatgcgtga tccagtcgaa gaattccgtg ctgtagccct
     2461 gcgtgaagtc cgtgccaatg cccacgttgt cttcgccgat caggtcgacc acgtactcga
     2521 ttgcctcgag gtagtcttcc accgtcgcat ccgcgccacg cttgagtaac ggcgcgaaca
     2581 tggtcacgcc gacaaaaccg cctgcatcaa caatttcctt aagctgctcg tcggacttgt
     2641 tgcgcgggtg ttctttcagg cctgacgggc agcaatgcga ataacacacc ggcttcttcg
     2701 agaaagcgat agcttctgaa gacgtcgtgc cgcccacgtg cgagaggtcg accatgatgc
     2761 ccacgcgatt catttcctgg atcacttcgc ggccgaaacc cgagagaccg ccatcgcgct
     2821 cgtagcaacc ggtgcctacg aggttctgcg tgttgtagca aagctgcacg acgttcacgc
     2881 caagctgctt gaatgtttcg atgtagccca ggttgtcctc gaacgcgtgc gcgttctgga
     2941 aaccaaaaat gatgcccgtc ttgttctctt tttttgcgcg acgaatgtcg tccgtcgtgc
     3001 gcacgagcgt gagaatatcg ctgtgctcgc ggatcatttg acgcatttcg ccaatgttgt
     3061 cgacggtctt ctggaagctc tcccagaccg ataccgtgca gttcaccgcg gttacgccgc
     3121 cctttctcat gtcctcgaat accgacggct cgaacttcga aatgttcagg ccatcgatga
     3181 tgatgctgct gtcgtgaagt gtgctcatct tttgctccgg aaaaggaggg cgtaatcaat
     3241 aaatagggaa gcgttcgcac agcgcgaaga tttcacggcg cacgcggtgt tcggtgtcag
     3301 cgtgaccttc ggggtggtcg cgcaaagcgt cgaacacttc cacgatcagg cgcccgatat
     3361 cacggaactc tgccacgcca aaaccacgcg tagtgccggc cggcgtgcca aggcgcacgc
     3421 ctgaggtgac cgtcggcttt tccggatcga aggggatgcc attcttgttg caggtgatgc
     3481 cggcgcgttc cagcgcatgc tcgacctggt tgcccttcaa gcccttcgga cgcagatcga
     3541 cgagcagcaa atggttgtcc gtgccgccgg tcacgagatc gacgccaccg gccttcagca
     3601 cttcgcccag cgctttcgca ttagccagca cgttatcgat gtaagtcttg aaaccgggct
     3661 gcagcgcttc gccgaaggcg acggccttac cggcgatca
//
LOCUS       DATGBK010001007         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_35841, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001007 DATGBK010000000
VERSION     DATGBK010001007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35841"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1031)
                     /locus_tag="VKJ77_14055"
     CDS             complement(<1..1031)
                     /locus_tag="VKJ77_14055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014724289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC46440.1"
                     /translation="MNEISMLIGGKQRQAADGASFDRCNPVTGETATRAPAASIADAD
                     AAVEAAHAAFPAWAALAPTERRKRLLKAADLMDARMGDFIAAGVAETGAMPNWYGFNV
                     MLAANMLREAASMTTQIDGSVIPSDVAGNLALAVRQPCGVVLGIAPWNAPVILGTRAV
                     AMPLACGNTVVLKASEQCPAVHTMIGDVLQEAGLGDGVINVVTNAPKDAAAIVERLIA
                     HPHVRRVNFTGSTHVGRIIAKLAAQHLKPVLLELGGKAPVLVLDDADLDAAVNGIAFG
                     AFFNQGQICMSTERVIVDRKIADVFIDKLTTKARSLIAGNPLDAGSVLGAMIDVSAVA
                     RVAALIADA"
     gene            complement(1056..>1520)
                     /locus_tag="VKJ77_14060"
     CDS             complement(1056..>1520)
                     /locus_tag="VKJ77_14060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HMC46441.1"
                     /translation="SPLVACDLAVAADEAVFGLSEINWGIPPGNLVSKAMADTVGHRR
                     ALHYIMTGDTFTGTEAADMGLVNKSVPLKQLRDETIALAAKLVEKNPVVLRAAKNGFK
                     RARELTWEQAEDYLYAKLDQAQLRDPEQGRAEGLKQFLDDKAIKPGLQAYKR"
BASE COUNT          257 a          512 c          452 g          299 t
ORIGIN      
        1 ctcgcatccg cgatcagcgc agccacacgg gcaaccgcgc tcacgtcgat catcgcgccc
       61 agcacgctgc ctgcatcgag tggattgccg gctatcagcg agcgcgcttt cgtcgtgagt
      121 ttatcgatga agacatcggc aatcttgcga tcgacgatca cgcgctccgt cgacatgcaa
      181 atttggccct ggttaaagaa tgcgccaaac gcgatgccgt ttaccgccgc gtcgagatcg
      241 gcgtcatcga gcaccagcac cggcgctttg ccgcctagct ccaacaacac cggcttcaag
      301 tgttgcgctg cgagcttcgc gatgatgcgt cccacatgcg tcgaacccgt gaaattcacg
      361 cgacgcacat gcggatgtgc aatcagcctt tcgacaatcg ccgccgcgtc cttcggggcg
      421 ttcgtcacga cgttgatcac cccgtcgccc agaccggctt cttgcagcac gtcgccgatc
      481 atcgtatgaa cggcagggca ttgctccgac gccttgagca caaccgtatt gccgcaggca
      541 agcggcatgg cgacagcgcg cgtaccgaga atcaccggtg cattccacgg cgcgatgccg
      601 agcacgacgc cgcacggctg gcgcaccgcc agcgcaagat tgccagcgac gtcggagggg
      661 attacgctgc cgtcgatctg cgtggtcatc gatgccgctt cgcgcaacat gttggccgcg
      721 agcatgacgt tgaatccgta ccagttcggc atggcgccgg tctcggccac gccggcggcg
      781 atgaagtcgc ccatgcgtgc gtccatcaag tcggccgcct ttagcaagcg cttgcggcgc
      841 tcggtcggcg ctagcgcggc ccatgcggga aacgcggcat gcgctgcctc taccgccgca
      901 tcggcatcgg cgatgctggc ggccggtgcg cgagtcgcgg tctctccggt caccggattg
      961 caccgatcga agctcgctcc gtcggccgcc tgcctctgct tgccgccaat cagcatgctg
     1021 atttcgttca tcgcgctgtc tcctcagcta tcacttcagc gcttataagc ttgcaggcca
     1081 ggcttgatcg ccttgtcgtc caggaattgc ttgagtccct ccgcgcggcc ttgctccggg
     1141 tcacgcaatt gcgcctggtc gagcttggcg tacagatagt cctcggcttg ctcccacgtc
     1201 agttcacgcg cacgcttgaa accgtttttc gccgcgcgca gcacgaccgg atttttctcg
     1261 accagcttgg ccgcgagcgc gatggtttca tcgcgcaact gcttgagcgg cacgctcttg
     1321 ttgacaaggc ccatgtctgc ggcttcggtg ccggtgaacg tgtcgcccgt catgatgtag
     1381 tgcagcgcgc gcctgtgacc gaccgtgtcc gccatcgcct tgctcacgag gttgccggga
     1441 ggaatgcccc agttgatctc cgagagaccg aacacggctt cgtcggcagc gaccgccaga
     1501 tcgcatgcaa cgagcggcga
//
LOCUS       DATGBK010001008         3241 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_58542, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001008 DATGBK010000000
VERSION     DATGBK010001008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58542"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(251..1387)
                     /locus_tag="VKJ77_14065"
     CDS             complement(251..1387)
                     /locus_tag="VKJ77_14065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46442.1"
                     /translation="MKPDQWHFSRPELAAGYLSLFGLGLSSARTLFARRRMGKTEFLL
                     KDLIPAATAAGYLTAYVNLWDDDEEPAGALVGALYGAIEPNWWGKLARHARSPVKKLK
                     ATGKIPAFGEASFEAELSAEDKKYVGTLLSDALKAFDSQPKPLLLIIDEAQVLAAATH
                     SNFAHALRAGLDVRKDRLKVIFAGSSESTLRTMFGRSSEPFFNWAPLEPFPLLGRDFL
                     QFMVEKVNTIAKHQLSMKHAVAAFNQLNSTPEFFRRFLERHLTYPFDGPGAALQFTKE
                     HVFNNEQFKRQWTGLLPADRALLGMMADGMVSDFHGQAAREQLGTLLGLPKAPPMNTP
                     AHSLRRLQADNIVTKLAHGEYRFEDEAFAQWIREQGTLGDDAPV"
     gene            complement(1456..3018)
                     /locus_tag="VKJ77_14070"
     CDS             complement(1456..3018)
                     /locus_tag="VKJ77_14070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020200870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HMC46443.1"
                     /translation="MTFPTNLGALIARDEGGDRGAETLAIIGLGDGFNERQYTFAELD
                     ALADAVAYTLAAQYARGERIALLAANSADYVATMLGIMRAGLVAVPVNYKFPRALIAD
                     VIADSGARLVFTDSLRVGDAPATLPRVVFDGQEEGTGAQGFQSFIAAAKSQSQSFEPV
                     VPHEKEAALFLYTSGSTGRPKGVVLSHASHLWVVETRLKAQPLSGERVLIAAPLYHMN
                     ALALVFLALAARATTVLMPAFNARNYIRAIDTYRCTWLTSVPPMIAMMMQEHELLART
                     DLSSVRYVRMGSAPVSGALLERTHALLPNAKVINAYGTTEGGPVAFGPHPAGLPTPAH
                     AIGAAHPEVELRLIDTNGEPASEGELEIRSRGLMNGYHNRPDLVTPITPDGFYRTGDV
                     FRRDENGFYAFIGRRDDMFVSGGENIFPGDVEKMLERHPSIQQASVIPVDDVIKGTKP
                     VAFVVLKPGVRLNAEEVKVFALEHAPAYQHPRQVWFVDAFPLASTNKIDRAVLKRDAA
                     RRLADEGHPEKA"
     gene            complement(3015..>3241)
                     /locus_tag="VKJ77_14075"
     CDS             complement(3015..>3241)
                     /locus_tag="VKJ77_14075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46444.1"
                     /translation="QLVYWTGAEFDARFGPNAQYIAARGPRFAAITVRTPAWRSAGER
                     ADAAGFPASVEMQRALVALPRFDTLLEFIP"
BASE COUNT          663 a         1001 c          951 g          626 t
ORIGIN      
        1 attgcccgcg acgcgcgacc gcatgtcgct tacgggatgg ttcagacgcc gcgcgtgacg
       61 cacgtgagtc atgtaactca cgcgccacgt cacatggcaa gctgctggcg gcgtatgaca
      121 agctgtttgc gccggtgagc cagcgctgaa gggggattta aggcgcgtcg tctgctgggc
      181 cattttcggg tccaggcacg acgcgcatca atcgctcgtt tcagggcgaa ggctttaaag
      241 aacatgtccg tcagaccggg gcatcgtcac ccagggtgcc ctgctcgcga atccactgcg
      301 caaacgcttc atcctcgaag cgatattcgc catgtgcgag tttggtaacg atgttgtcgg
      361 cctgaagccg gcgcaacgaa tgcgcaggcg tgttcattgg tggcgctttg ggcaagccga
      421 gcaaggtgcc cagttgttcc cgtgccgcct ggccatgaaa gtcggaaacc atgccgtcgg
      481 ccatcatgcc gagcagcgcg cggtcggccg gcagcaaccc ggtccactgg cgcttgaatt
      541 gctcgttgtt gaacacgtgc tctttcgtga attgcaatgc cgcgcctggg ccatcgaacg
      601 gatacgtaag atgccgctcc agaaaacgcc ggaaaaactc cggcgtgctg ttgagctgat
      661 tgaaagccgc gacagcatgt ttcatcgaga gctgatgctt ggcaatggtg ttgaccttct
      721 ccaccatgaa ctggaggaaa tcgcggccga gcagcggaaa gggttcaagc ggcgcccagt
      781 tgaaaaacgg ctcggacgag cgtccgaaca tggttctcaa ggtcgattcc gaactgccgg
      841 caaagatcac tttcagccgg tccttgcgaa cgtccagccc cgcacgcaat gcatgcgcaa
      901 aattcgagtg ggtcgcggcg gccagaacct gcgcttcgtc tatgatcaga agcagcggtt
      961 tcggctggga atcgaaggcc tttagcgcgt cggataaaag cgtgccgaca tacttcttgt
     1021 cctccgccga taactccgcc tcgaacgatg cttcaccgaa tgccggaatc ttgcccgtgg
     1081 ctttgagctt cttgaccgga ctccgggcgt gacgtgcaag cttgccccac cagttcggct
     1141 cgatagcgcc gtagagcgca cctacaagcg cgcctgcggg ttcctcgtcg tcgtcccaca
     1201 ggttcacgta ggctgtcaga tagccggccg ccgttgccgc cgggatcagg tccttgagca
     1261 ggaattccgt cttgcccatc cgcctccgcg cgaacaacgt gcgcgcggag gacagaccca
     1321 gcccgaacag gctcagatac cctgccgcaa gctctggacg agaaaaatgc cattgatcgg
     1381 gtttcatatt tcaaactata tcatcagttt ttaaatatat caaatctgat gatataactt
     1441 gatagtctgc gttcctcagg ccttttcagg atgcccttcg tccgctagac gccttgccgc
     1501 atcgcgcttc aaaaccgccc ggtcgatctt gttggtcgac gcaagcggaa acgcatcgac
     1561 gaaccagacc tgccgcggat gctgataggc cggcgcgtgt tccagcgcga acactttcac
     1621 ctcctcagca ttcaatcgca cccccggttt cagcacgaca aaggccacgg gttttgtacc
     1681 cttgatgaca tcgtcgacgg gaatcacgct cgcttgctgg attgaaggat gtcgctcgag
     1741 catcttttca acgtcacccg ggaagatgtt ttcgccaccg gaaacgaaca tgtcatcgcg
     1801 tcgtccgatg aacgcataga aaccgttttc gtcgcggcga aatacatcgc cggtgcgata
     1861 aaaaccgtcc ggcgtgatcg gtgtcaccag gtccgggcga ttgtgatatc cgttcatcag
     1921 gccccggctg cgaatctcca gttcaccttc gctcgcgggc tcgccgttcg tatcgatgag
     1981 acgaagctcg acttccgggt gcgccgcgcc gatcgcgtgc gcaggcgtgg gcaagcctgc
     2041 gggatgcggt ccgaacgcga ctggcccacc ctcggtcgtc ccgtacgcgt tgatgacctt
     2101 cgcattcggc agcagcgcgt gagtccgctc gagcaacgcg ccgctgactg gcgccgagcc
     2161 catccgcaca taacgcactg acgacaaatc cgtgcgcgcg agcagttcat gctcctgcat
     2221 catcatggcg atcatcggtg gcacggaagt gagccacgtg cagcgataag tatcgatagc
     2281 gcggatgtaa ttgcgcgcgt tgaaggccgg catcaacaca gtcgtggcac gggcggccaa
     2341 cgcgaggaac accagcgcga gcgcattcat gtgataaagc ggcgcggcga tcagcacacg
     2401 ctcaccgctc agtggctgcg ctttcaggcg cgtctcgacc acccagagat gactcgcgtg
     2461 cgaaagcacg acgcccttcg gccgccccgt ggaacccgat gtatagagga acaacgcggc
     2521 ttctttttcg tgcggaacga cgggctcgaa gctctggctc tgcgattttg ccgctgcaat
     2581 aaacgattgg aatccctgcg caccagtgcc ttcctcttgg ccatcgaaaa ccacgcgcgg
     2641 cagagtcgca ggtgcatcac ctacacgtag ggaatcagtg aagacgagac gcgcgccgct
     2701 atccgcaatc acatccgcaa tcagcgctcg cgggaattta tagttgaccg gcacggcgac
     2761 cagccctgcg cgcatgatgc ccagcatcgt cgcgacatag tccgccgaat tggccgcgag
     2821 cagcgcaatg cgctcgcctc gcgcgtactg agcggcgagc gtataggcca ctgcgtcggc
     2881 gagcgcatcc agttcagcga aggtgtattg acgctcgttg aaaccatcgc caaggccaat
     2941 gatggcaagc gtctcggcgc ctcgatcgcc accctcgtcg cgtgcaatca gcgcgccgag
     3001 attcgtcggg aaagtcatgg tatgaattcc agcaaggtat cgaagcgagg cagcgcgacg
     3061 agcgcccttt gcatctcgac ggacgcaggg aaacccgctg cgtcagcgcg ctcacccgcc
     3121 gatcgccagg ctggcgtgcg caccgtgatc gcggcaaaac gcggtccgcg cgcggcaatg
     3181 tactgcgcgt tcgggccgaa ccgcgcgtcg aattctgcac ccgtccagta caccaattgg
     3241 a
//
LOCUS       DATGBK010001009         1588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_197578, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001009 DATGBK010000000
VERSION     DATGBK010001009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197578"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1089)
                     /locus_tag="VKJ77_14080"
     CDS             complement(<1..1089)
                     /locus_tag="VKJ77_14080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HMC46445.1"
                     /translation="MLKLLKRARQPSGCRAAVRSRAFTFHPFHRCTFRRHACLPLSLL
                     APAFVLAAPAVATSESSPESTPDRRAADAVQLAPVVVTGTAGSSARSPLDPNLPATTA
                     TVTAEQSQYWNVVTPEDVLKYVPNMAVRKRFIGDVNSPIAVRGTSNSQTARGLVYADG
                     LLLSNFLGNTFTFAPRWSMVFADDIARTDVIYGPYSALYPGNSIGATVAITTRMPEKF
                     EADAHVQAFSQHFDLFGVNRSFNGTNSSATLGDKNGNLSWLIGVDHLENTGQPLQFAT
                     LAASAMPAKATDPPVTGAVFYNDQNNNRTAVLGVTSEGIERTFQDQFKLKLAYDFTPT
                     LQAGFTLGYWHQKYNSDTQSFLRDAAGNP"
     gene            complement(1194..>1588)
                     /locus_tag="VKJ77_14085"
     CDS             complement(1194..>1588)
                     /locus_tag="VKJ77_14085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2946 domain-containing protein"
                     /protein_id="HMC46446.1"
                     /translation="AWLGMAAMWLAIVAPVISQTLVSRQQGVDPQAAICSADALAQIV
                     SSALVSTPHRAVQSNEPAGHHMAGADSFDACSYCGLLAHNVPLASAPPAALVRVERVT
                     RLAAVPVAQIVHVKSFNAASPRAPPIVS"
BASE COUNT          331 a          464 c          528 g          265 t
ORIGIN      
        1 cggattgccg gcggcatcgc ggagaaatga ttgggtatcg ctgttgtatt tctgatgcca
       61 gtagccgagc gtgaagccgg cttgcaaagt gggcgtgaag tcgtacgcga gcttcaactt
      121 gaactgatcc tggaacgtcc gctcaatccc ctccgatgtc acgcccagca ccgccgtgcg
      181 gttgttgttc tggtcgttgt agaaaaccgc gccagtcacc ggcggatcag tcgccttcgc
      241 cggcatggcc gatgccgcca gcgtcgcgaa ttgcagcggc tggcccgtgt tttccagatg
      301 atcaacgccg attagccatg acagattgcc gttcttatcg ccgagggtcg ccgacgaatt
      361 cgtgccgttg aaactgcgat tcacgccgaa cagatcgaag tgctggctga acgcctggac
      421 gtgggcatcg gcttcgaact tctccggcat gcgcgtggta atggcgaccg ttgcgccgat
      481 cgagttgccg ggatacagcg ccgaatacgg accgtagatc acgtcggtgc gcgcgatgtc
      541 gtcggcgaaa accatcgacc agcgcggtgc gaacgtgaag gtattgccga ggaaattgct
      601 gagcagcagg ccatcggcgt aaaccaaccc ccgcgccgtt tgcgaattgc tcgtgccgcg
      661 cacggcaata ggcgaattca catcgccgat aaaacgctta cgcactgcca tattcggcac
      721 gtacttcagc acgtcttcgg gcgtgaccac gttccagtat tgcgactgct cggcggtgac
      781 tgttgcggtc gtggcaggga gattcggatc gagcggagag cgcgccgatg agcccgcggt
      841 acctgtgacg acaaccggtg cgagctggac ggcatcggcg gcgcggcgat cgggcgtact
      901 ctcgggcgag ctttccgatg tagccacggc aggggcggca agcacgaaag ctggcgccag
      961 cagggaaagc ggcaagcagg catggcgtcg gaatgtgcaa cgatgaaacg gatgaaacgt
     1021 gaacgcgcgc gaacgcacgg cggcacggca acctgacggc tgccgtgctc gcttgaggag
     1081 cttgagcatc gaagaaaatc ctgaatgagt ggacgcagac cggccggcca cgggcgctta
     1141 aacggcgcgc gtagccacgg caaacagccg ggacgggtca atacggacgg acttcaggaa
     1201 acgatgggcg gcgcgcgcgg agacgcggca ttgaacgact tgacgtgaac gatttgcgca
     1261 accggcacgg ccgcgaggcg cgtgacgcgt tcgacccgca ccagcgcggc aggcggcgcc
     1321 gatgccagcg gcacgttgtg cgcgagcaaa ccgcagtacg aacaggcgtc gaacgaatcg
     1381 gcgccggcca tatgatgacc ggctggttcg ttgctttgaa ccgcccgatg cggcgtggag
     1441 acaagcgcag atgaaacgat ctgcgcgagg gcatcggcgg aacagatcgc tgcttgcgga
     1501 tcgacaccct gctgacgcga caccagcgtc tggctaatca ccggcgcgac aatagccagc
     1561 cacatggctg ccatgccgag ccatgcaa
//
LOCUS       DATGBK010001010         1873 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_197589, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001010 DATGBK010000000
VERSION     DATGBK010001010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197589"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1353)
                     /locus_tag="VKJ77_14090"
     CDS             complement(<1..1353)
                     /locus_tag="VKJ77_14090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC46447.1"
                     /translation="MKMPRALVLTPFVLALAACITVGPDYSVPKDAVVNAPFANAPLD
                     GADGQSTISSGPVPAHWWRLYDDPVLDDLVQQAMASNTDLRVAAANLGRSRAALSVAQ
                     AQGGFSGGTSAAFKRAQESAEQYLIFEKIPVANEGDIGINISYELDLFGTLRRGVEAA
                     RADSDATQAAADLARITVVADVVRAYVQNCSAAEELGIAQRSLDLQRQRVSVSRRLQQ
                     AGRGNAPDVTSGQTQVETLSANIPVFTARRRIAQYQLATLLARAPADLPKGVFACNKT
                     PVIAQPLPVGDGAALLRRRPDVREAERKLAGSTARIGVATGALFPTVTLGASAGLTGV
                     LEDLGTQPTARWGFGPLISWSFPVNGQRGRIQEAQYGADAALAQFDGVVLKALRETQS
                     SLATYAADYTRADALTAAQKSAAESADQTHRFFLAGRESFIADLDATRTLTSTNGQLA
                     A"
     gene            complement(1350..>1873)
                     /locus_tag="VKJ77_14095"
     CDS             complement(1350..>1873)
                     /locus_tag="VKJ77_14095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HMC46448.1"
                     /translation="TGEYVTAGRSVLSVVDLHSFRVDGYFEETKLHGIDIGQPVDIKI
                     MGETKMLHGHVQSIVAGIEDRDRTQGSNLLPNVNPAFSWVRLAQRIPVRIALDEVPAD
                     FRMIAGRTATVSVRDIEPLGKSKPAAGTGGASGVVAASGASDASAAVPVSAASGASPV
                     SSTATASAPGASQ"
BASE COUNT          342 a          644 c          564 g          323 t
ORIGIN      
        1 cgcagccaac tgcccattcg tcgatgtcag ggtccgcgta gcatccagat ccgcgataaa
       61 cgactcccgt ccagcgagaa agaagcgatg agtctgatcg gcggattcag cggctgattt
      121 ctgcgcggcc gtcaatgcat cggcgcgggt gtaatcggcg gcatacgtgg cgagactcga
      181 ctgcgtttcc cgcagcgcct tcaacacaac gccatcgaac tgggcaagcg cggcatcggc
      241 gccgtattgc gcttcttgaa tccggccgcg ctgaccgttc accgggaagg accagctgat
      301 caacggaccg aagccccaac gtgcggttgg ttgcgtgccg agatcctcca gtacccccgt
      361 cagccccgcc gatgccccga gggtcaccgt tggaaacagc gcacccgtgg ctacgccgat
      421 ccgcgccgtc gatccagcga gctttcgttc cgcctcgcgt acgtcgggac gccggcgcag
      481 cagcgcggcg ccatcgccga cgggcagtgg ctgcgcgatc accggtgtct tgttgcaggc
      541 aaacacgccc tttggcagat cggcgggcgc acgcgccagc agtgtggcga gctggtattg
      601 cgcgatccgc cggcgtgccg tgaagaccgg aatattcgcc gagagcgttt ccacttgcgt
      661 ctggccactc gtgacatcgg gcgcattacc tcgacccgcc tgctgcaagc gccgcgatac
      721 agacacccgc tggcgctgca agtccagcga gcgctgcgcg atgccaagct cttccgctgc
      781 tgaacaattc tgcacgtaag cccgtacgac atccgctacc accgtaatgc gagcgagatc
      841 ggctgctgcc tgggttgcat cgctgtcggc gcgtgccgct tccacgcccc gtcgcagcgt
      901 gccgaacaga tcgagctcat aagaaatgtt gatgccgata tcgccttcat tcgcgaccgg
      961 gatcttttca aagatcaagt attgctccgc cgattcctgc gcgcgtttga acgcagccga
     1021 tgtgccgccc gaaaaaccgc cttgcgcctg cgccacgctg agcgcggcgc gcgagcggcc
     1081 gagattggcc gcagcgacgc gcagatccgt gttcgacgcc atggcttgct ggaccagatc
     1141 gtcgaggacg gggtcgtcgt acagacgcca ccagtgtgcc ggcaccggcc cgctcgatat
     1201 cgtcgactgg ccatccgcgc cgtcgagcgg agcgttggcg aacggtgcgt tgacgacggc
     1261 gtctttcggt accgagtagt cgggaccgac cgtaatacac gcggcaagcg cgagcacgaa
     1321 cggcgtcagg acgagagcgc gcggcatctt cattgactcg cacccggcgc ggaggcggtc
     1381 gcagtgctgc taaccggaga ggcgccgctt gcggcgctca caggaacggc agccgaagca
     1441 tctgaagccc ctgaagcagc aacgacacca ctcgcgccac ccgtcccagc agctggcttc
     1501 gatttgccga gcggttcgat atcgcgcacc gacaccgtcg ccgtgcgtcc cgcgatcatg
     1561 cgaaagtccg ccggcacttc atccagcgcg atccgcaccg gaatccgctg cgccagccgc
     1621 acccagctga acgccgggtt cacgttcggc agcagattcg atccctgcgt gcggtcgcga
     1681 tcctcgatcc ccgccacgat gctctgcaca tgcccgtgca gcattttcgt ctcgcccatg
     1741 atcttgatgt ccaccggttg cccgatatcg atcccgtgaa gcttggtctc ctcgaaataa
     1801 ccatcgacgc gaaacgagtg caggtccacc acagacaaca ccgagcgtcc cgccgtcaca
     1861 tattcgcccg tac
//
LOCUS       DATGBK010001011         2757 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_58573, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001011 DATGBK010000000
VERSION     DATGBK010001011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2757
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58573"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1526
                     /gene="mdcA"
                     /locus_tag="VKJ77_14100"
     CDS             <1..1526
                     /gene="mdcA"
                     /locus_tag="VKJ77_14100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015451 - decarboxylation-driven active
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="malonate decarboxylase subunit alpha"
                     /protein_id="HMC46449.1"
                     /translation="IQSGDRVALEGNNQKQADFLSRAFAKLDPSRVHDVHLLISSISR
                     PEHLTLFERGIARKVDFAFAGPQSLRVAQLLEDGQLEIGAIYTYIELYARMFIDLTPQ
                     VALVCAVQADRHGNLYTGANTEDTPTIVEATAFRHGIVVAQVNEIVDELPRVDIPGSW
                     VDVVVQADRPFAVEPLFTRDPRHIGELQILMAMMTIRGIYERYGVKALNHGIGFDTAA
                     IELLLPTYGAAHGLKGKICTHWALNPHPTLIPAIESGWVESVHCFGSEVGMEDYIEAR
                     SDVFFTGRDGSLRSNRVLCQLAGQYGVDLFIGSTLQMDADANSSTVTLGRLAGFGGAP
                     NMGHDPRGRRHSSEAWLKLMKNDGPNNAIGRGHKLVVQTAETFKKGGEPTIVDALDAI
                     AVGKQSNMPIAPVMIYGDDVSHVVTEEGIAYLHAAEGVEERRAALRAVAGVTPIGMRA
                     DPAKTAELRRRGIVAYPEDLGIRRGEAKRSLLAARSIDDLVAWSGGLYEPPAKFRGW"
     gene            1533..2396
                     /locus_tag="VKJ77_14105"
     CDS             1533..2396
                     /locus_tag="VKJ77_14105"
                     /EC_number="2.4.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046917 - triphosphoribosyl-dephospho-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase"
                     /protein_id="HMC46450.1"
                     /translation="MACTQSVFIDVACDPSTLADMAVSALIDEACLTPKPALVDRRGS
                     GAHRDLDLDTMLRSAHSLRPTFLALARAAVDQKPSQRLREQLARIGREGEVAMLRATN
                     GSNAHRGAIWIVGLLCAAAAMSPHALGEPFELCAQAAVIARFDDRFAPAPSEISNGAR
                     VVQRFGVAGARGQAAEGFPHVHEAGLPALHRSRANGATEDEARLDALLAIIATLDDTC
                     LLHRGGQVALEAAQTGAREALQAGGAARPQGRAALAQLDQRLTELNASPGGAADLLAA
                     TLFLDTLPRVG"
     gene            2412..2714
                     /locus_tag="VKJ77_14110"
     CDS             2412..2714
                     /locus_tag="VKJ77_14110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase subunit delta"
                     /protein_id="HMC46451.1"
                     /translation="MENLRYEYPATRPVPQRAHVGVVGSGDLEILLSPSESQHAEVVI
                     RTSVDGYEHVWKSVLDRFFSRYDGAARLELNDFGATPGVVMLRLAEAVEASEGDAS"
BASE COUNT          526 a          849 c          873 g          509 t
ORIGIN      
        1 tgatccaatc cggcgatcgt gtcgcgctgg aaggcaataa ccagaaacaa gctgacttcc
       61 tctcgcgcgc gttcgcgaag ctcgatccgt cgcgcgtgca tgatgttcat ctgctgattt
      121 ccagcatcag ccgacccgaa cacctgactc tgttcgaacg cggcatcgca cgcaaggtgg
      181 acttcgcgtt cgcagggccg cagagtttgc gcgtggcgca gttgctcgag gacgggcaac
      241 tcgagatcgg cgcgatctat acgtatatag aactgtatgc gcgcatgttc atcgacctga
      301 cgccgcaagt cgcgctcgtc tgcgcggtgc aggcggatcg tcacggcaat ttgtatacgg
      361 gtgcgaacac cgaggacacg ccgaccatcg tggaggcgac cgcgttccgt catggcatcg
      421 tggtggcgca agtgaacgag atcgtcgacg aactgccccg tgtcgatatc cccggctcat
      481 gggtcgatgt cgttgtgcag gccgaccggc cgtttgccgt cgaaccgctg ttcacgcgcg
      541 atccacgtca tatcggcgaa ttgcagatcc tcatggcgat gatgaccata cgcggcatct
      601 acgagcgtta tggcgtgaag gcgctgaacc acggcattgg cttcgacacc gccgcgatcg
      661 aattgctgct gccgacttat ggcgcagcgc acgggctgaa gggcaagatc tgcacgcact
      721 gggcactcaa tccgcatccc acgttgatcc cggccattga gagcggctgg gttgaaagcg
      781 tgcattgctt cggcagcgaa gtgggcatgg aggattacat tgaagcgcgc tcggatgtgt
      841 ttttcacggg ccgcgatggc agccttcgat caaaccgtgt gttgtgccag cttgcgggcc
      901 aatatggcgt tgacctcttt atcggctcga cgttgcagat ggacgccgac gcaaattcat
      961 cgaccgtcac gctcggccgc cttgccggat tcggcggtgc gccgaacatg ggacacgacc
     1021 cgcgcgggcg ccgtcattcg agcgaagcgt ggttgaagtt aatgaaaaac gatggaccga
     1081 acaacgcgat cggacgcggg cataagctcg tcgtccaaac cgccgagacc ttcaagaagg
     1141 gcggcgagcc gactattgtc gatgccctcg atgccatcgc tgtcggcaag caaagcaaca
     1201 tgccgattgc tccggtcatg atctacggcg acgacgtcag ccacgtcgtg accgaagaag
     1261 ggatcgctta tctgcatgcg gccgaaggcg tggaagagcg ccgcgcggcg ttgcgcgccg
     1321 tcgcgggggt cacacccatc ggcatgcgcg ccgaccccgc caagacggcg gaattgcggc
     1381 ggcgtggcat tgttgcttac ccggaagacc tgggcatccg gcgcggcgaa gcaaagcgct
     1441 cgttgctggc ggcacggagt atcgacgatc tggtcgcgtg gtcgggcggg ctgtatgagc
     1501 cgcccgcaaa attccgcggc tggtgaaacg cgatggcctg cactcaatcc gtattcattg
     1561 acgttgcctg cgacccgtcg accctcgcgg atatggcagt ctcggcgttg atcgatgagg
     1621 cgtgtctcac gccgaaaccc gcgctggtgg accggcgtgg cagcggcgcg catcgtgatc
     1681 tcgacctcga caccatgctg cgttcggcgc attcgttacg gccgactttt ctcgcgctgg
     1741 cgcgagccgc ggttgatcaa aagccttcgc aacggctgcg cgaacaactt gcgcgtattg
     1801 gccgtgaagg tgaagtggcg atgctgcgtg caacgaatgg cagcaatgca catcgcgggg
     1861 cgatctggat tgttggcttg ttatgtgccg ctgctgcaat gagcccgcac gctctcggag
     1921 agcccttcga actctgcgca caagcggcag tcattgctcg cttcgacgac cgcttcgcac
     1981 cggcgcccag tgagataagt aacggtgcgc gagttgtcca acgcttcggc gtagcgggtg
     2041 cacgcggtca agccgcggaa ggtttcccgc acgtgcatga agccggcttg cccgcgctgc
     2101 accggtcccg tgcaaacggc gcaaccgaag atgaagcgag gctcgatgca ctgctcgcca
     2161 tcatcgcgac actcgacgat acctgcctgc tgcatcgcgg cggccaagtc gcgcttgagg
     2221 ccgcgcaaac aggcgcccgc gaagcattgc aagccggcgg cgcagcacga ccgcagggcc
     2281 gcgccgcgct cgcccagctc gaccaacgtc tgaccgaatt gaacgcatct cccggaggcg
     2341 cggcggactt gctggccgcc accctcttcc tcgataccct gccgcgcgtc ggctgacgcg
     2401 gagaacacgt catggaaaac ttgcgctacg aatatcccgc cacccgccct gtaccgcaac
     2461 gcgcgcatgt gggcgtggtc ggctcgggcg acctggagat cctgctgtcg ccgtcggaga
     2521 gccaacacgc ggaagtcgta atccgcacga gcgtggacgg ttatgaacac gtgtggaaaa
     2581 gcgtgctcga ccgcttcttc tcgcgctacg acggcgccgc gcggctcgaa ctcaacgatt
     2641 tcggtgcaac gcccggtgtc gtcatgttgc ggctcgccga agcagtggaa gcgagcgaag
     2701 gagacgcatc atgagcgctc acgaaacctt catcgcacag catagtttta ttgaact
//
LOCUS       DATGBK010001012         1524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_58576, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001012 DATGBK010000000
VERSION     DATGBK010001012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58576"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            68..505
                     /locus_tag="VKJ77_14115"
                     /pseudo
     CDS             68..505
                     /locus_tag="VKJ77_14115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179629.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(714..>1524)
                     /locus_tag="VKJ77_14120"
     CDS             complement(714..>1524)
                     /locus_tag="VKJ77_14120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC46452.1"
                     /translation="SIPASKIYSDAGIVQISPSATNPVYTQQGFKTTYRVVATDAQQG
                     PALANYASKDLKVKSVAIVDDSTAYGQGLANEFEKTAKSLGMNVMSHDATNDKAVDFR
                     AILTKIKGENPDAIMYGGMDATGGPFAKQAKQLGLRARVLAGDGVCTDQLSTLAGDAT
                     DNIVCSEAGMALEKMAGGAAFEAKFQKRFGQPIQIYAPFTYDAVYIIVDAMKRANSTD
                     PAKIVAAMPDTDYKGVIGETTFDSKGDLKHGVISLYDYKGGKKTLLDVVKM"
BASE COUNT          267 a          463 c          474 g          320 t
ORIGIN      
        1 actgcgtcgc cgccgaaacg tccggccgcc atgccgccgg tgaaggccgc gtaggccgcg
       61 ctggacagcg ctgtccagcg cggcctacgc ggccttcacc ggcggcatgg cggccggacg
      121 tttcggcggc gacgcagtgc gtgcccgctt cggcgcgcct cagctgatct tcgcgagcgc
      181 ggcgctggcg tttatcggca tggtggcggc gctgttactg cctgacgcgg tcgtcacgct
      241 cgcaggtttc acgctaatgg ggctcggact cgcgaacatg atgccggtgc tgttcgccgc
      301 ggcggcgcgt gtggagggcg taagcccggc ggaagggctg gcgcaggtcg cggggctggc
      361 ttacttcggc ctgctgttcg ggccggtgct gataggcggt gtggcgcagt tgagcacgtt
      421 gccgatcggg ttatcggtgg tcgcggcttg cgcagcgctg atcgcgctcg tgggacctag
      481 aatcatgaag cagttgaagt tgtgaacgga cagcgccgcg ttcaccggat tgcaacatgc
      541 taaccggcca cgagcgccaa ccattcaata agcgttggcc acttcatcgg ttacttcttg
      601 cgaaatcgcc gcgcaaaaaa aacgcgctga ccaaaatcag cgcgtttttt caagaatgaa
      661 aatcatcgaa ggcggtcttg gtcgaaacat cacgacccga ccgcccgcgg caattacatc
      721 ttgaccacgt ccagcagcgt cttcttgccg cccttgtagt catacagcga gatcacgccg
      781 tgcttcaggt cgcccttcga gtcgaaggtc gtttcgccga tcacaccctt gtaatccgta
      841 tccggcatcg ctgccacgat cttcgccgga tcggtggaat tggcgcgctt catagcatcg
      901 acaatgatgt acaccgcgtc atacgtgaac ggagcgtaga tctggatcgg ctggccaaag
      961 cgcttctgga acttggcttc gaacgccgcg ccgcccgcca tcttctcgag cgccataccg
     1021 gcttccgagc agacgatgtt gtcggttgcg tcgccggcaa gcgtcgacaa ctggtcggta
     1081 caaacaccgt cgccggccag aacgcgtgcg cgcaggccaa gttgcttggc ttgcttggcg
     1141 aacggaccgc cggtggcgtc catgccgccg tacatgatcg cgtccgggtt ttcgcccttg
     1201 atcttcgtca aaatcgcgcg gaagtcgaca gccttgtcgt tggtcgcatc atgcgacatc
     1261 acgttcatgc cgagcgactt ggcggtcttt tcaaactcgt tcgcgagacc ttggccgtaa
     1321 gcggtcgagt cgtcgacaat cgcgacgctc ttaaccttca agtccttgga agcatagtta
     1381 gcgagtgccg gaccttgttg tgcatcggtt gccacaacgc gatacgtcgt cttgaagcct
     1441 tgttgcgtgt acaccgggtt cgttgccgac ggcgagatct gcacgatgcc cgcatcgcta
     1501 tagatcttcg aagccgggat cgag
//
LOCUS       DATGBK010001013         1595 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290032, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001013 DATGBK010000000
VERSION     DATGBK010001013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290032"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(181..>1595)
                     /locus_tag="VKJ77_14125"
     CDS             complement(181..>1595)
                     /locus_tag="VKJ77_14125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC46453.1"
                     /translation="TLIQAVVGTSLSLGLRNFFLLTGGVAMLAVTSPVLSGYIIATLV
                     VVVAPIIIFGRRVRRLSRASQDKVANASAVAGEVLNAMPTVQSYTQEPFEARRFGGAV
                     ELAFETALKRIRARAWLTAVVIVLVFTAIVFVLWLGAQAVLDGRMTAGQLSQFILYAV
                     FTAGAVGAVAEVWGDLQRAAGATERLLQLLSARSPVVEAETTVPLPTRGEGIRFDNVS
                     FSYPSRPGVAALSSLSLDVRSGEHVALVGPSGAGKTTLFQLLLRFYDPQSGAILINGV
                     PTRQVPLVELRREIGVVLQESVIFSGSVLDNIRYGAPEATLAQVQRAAEMAAAAGFIE
                     ELPQGYDTFLGERGVRLSGGQRQRIAIARAILKNPPILLLDEATSALDAASERLVQKA
                     LDNAAQNRTTLVIAHRLATVQQADRIIVMEQGRIVAQGRHVELLLSSPLYAQLAALQF
                     GEQQGKMGQSGAVHDRVDSA"
BASE COUNT          317 a          555 c          463 g          260 t
ORIGIN      
        1 gaaccgtctt aaatgaccgc acatcgccag tcgacgcctc acgctaccgc atcggatcaa
       61 cccgtttgaa ccattcagcc gccacgctct acgctccccg ttccggtcac cgtgagcgtt
      121 tcgtttgcga agcatttatc ggcagccatc gggtctttgc agacggttgt gatcgagcct
      181 tcacgcagag tcaacacgat catgcacggc gccgctctgc cccatcttcc cttgctgctc
      241 gccgaactgc agcgcagcca actgcgcata cagcggcgaa ctcagaagca gctcgacgtg
      301 acggccttgc gccacaatgc ggccttgttc catcacgata atgcggtcgg cttgctgcac
      361 cgtagccaag cgatgcgcga tgaccagcgt ggtgcggttc tgcgcggcat tgtccagcgc
      421 cttttgcacc agccgttcgc ttgctgcatc gagcgcgctg gtggcctcgt ccagcagcag
      481 gatgggcgga ttcttcagga tcgcacgcgc aatcgcaata cgctggcgct gtccgccaga
      541 gagccgcaca ccgcgctcgc ccaggaacgt gtcgtaacct tgcggcagct cttcgataaa
      601 gccagccgca gcggccattt cggcagcccg ctgcacttgc gcgagtgtgg cttcgggcgc
      661 gccatagcgg atgttgtcga gcacgctgcc ggaaaagatc accgattcct gcagcactac
      721 cccgatttcc ctgcgcaact cgacgagtgg cacttgccgc gtgggcacgc cgttgatcag
      781 aatggcgcca gactgcggat cgtaaaaacg cagcagcagt tgaaacagcg tagtcttgcc
      841 ggccccggac ggtccaacca acgcgacatg ctcgcccgag cggacgtcga gtgagaggct
      901 ggaaagcgca gcgacaccgg gtcgcgacgg atacgagaaa ctgacgttgt cgaagcggat
      961 gccttcgcca cgcgtcggca acggcacggt cgtctcggcc tccaccaccg gcgagcgcgc
     1021 ggacagcagt tgcagtagcc gctcggtggc accagcggcc cgctgcagat cgccccacac
     1081 ctcggcgact gcccccacgg cgccggccgt gaacaccgcg tagaggatga actgggacaa
     1141 ttgcccggct gtcatcctcc cgtccagcac tgcttgcgcc ccgagccaaa gcacgaacac
     1201 gatggcggtg aacaccagca cgatcaccac cgcggtcaac caggcgcgcg cccgaatgcg
     1261 cttgagcgcc gtctcaaagg ccaactcaac cgcgccgcca aaccgccgcg cctcaaacgg
     1321 ctcctgcgtg tacgactgca cggtcggcat ggcattgagc acctcacccg ccaccgcact
     1381 cgcgttcgct accttgtcct ggctcgcgcg cgaaagccgc cgcacgcgcc ggccgaagat
     1441 aatgatcggc gcgacgacca caaccagcgt ggcaataatg tagcctgaca gtacagggct
     1501 ggtcaccgcc agcatcgcca cgccgccggt aagcaggaag aagttgcgca atcccaatga
     1561 aaggctcgtg ccgactaccg cctggatcaa cgtgg
//
LOCUS       DATGBK010001014         2127 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_11992, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001014 DATGBK010000000
VERSION     DATGBK010001014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11992"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..899
                     /gene="tolB"
                     /locus_tag="VKJ77_14130"
     CDS             <1..899
                     /gene="tolB"
                     /locus_tag="VKJ77_14130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Tol-Pal system beta propeller repeat protein
                     TolB"
                     /protein_id="HMC46454.1"
                     /translation="LVSPESGLRMSAHKVADYIYAKLLGDRGVFATRLSYVIKTGGRY
                     QLQISDSDGQDARIALSSPEPIISPAWSPDGTKVAYVSFEKKKPVVYIHDLPTGKRVI
                     VSNQKGNNSAPAWSPDGRKLAVALSTTGNTQIFQVNADGSGLRRLTLGSSIDTEPAYS
                     PDGNTIYFTSDRGGQPQIYKMSANGESAGQAQRVTFTGNYNTSPRVSPDGKQIAYISR
                     VGGGFKLYLLDLASGTATGLTDTTNDESPSFAANGQYILYATQVSGRGVLAAVSTDGR
                     TRQVLSLQGGSVREPSWGPFMQ"
     gene            944..1450
                     /gene="pal"
                     /locus_tag="VKJ77_14135"
     CDS             944..1450
                     /gene="pal"
                     /locus_tag="VKJ77_14135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HMC46455.1"
                     /translation="MMSKIRIGFAVAMVGALAACHSGVKLDEGANKGAIGTQPDANAV
                     QQVNVDPLNDPNSPLAKRSIYFDFDSYAVRDDYQPLLQQHAQYLKSHPDRHVLIQGNT
                     DERGTSEYNLALGQKRAEAVRRAMSLLGVADSQMEAVSLGKEKPQATGHDESSWAQNR
                     RADLAYQQ"
     gene            1477..>2127
                     /gene="ybgF"
                     /locus_tag="VKJ77_14140"
     CDS             1477..>2127
                     /gene="ybgF"
                     /locus_tag="VKJ77_14140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006025426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system protein YbgF"
                     /protein_id="HMC46456.1"
                     /translation="MLYRFPSLRAVAVACLLGSAMVGGSAHAALFDDNEARKAVLDLR
                     TKTDSLASQLSAAQRTILDQSNRLDQLNQQVATLRGQNEDLANQLTTLQKQQKDYYAD
                     LDGRLKKFEPQQQTVDGVQGTVQPGETESFNAASTQFRNGDFKNAAASFKVFVAKYPD
                     SPYQPTAQYWLGNAQYALRDYKGSTATWQNLVKNFPTHPRAPDALLAIANNQIEQGQ"
BASE COUNT          477 a          613 c          638 g          399 t
ORIGIN      
        1 cgctcgtcag cccggaaagc ggtctgcgga tgagcgcgca caaggtcgcg gactatatct
       61 acgcaaaatt gctgggcgat cgaggtgttt tcgcgacgcg cctctcatac gtgatcaaga
      121 ccggcggccg ttatcagttg cagatttcgg actccgatgg ccaggacgca cgcattgcgc
      181 tgtccagccc cgagccgatc atctcgccgg cgtggtcgcc tgacggcacc aaggtcgcgt
      241 acgtctcgtt cgagaagaaa aaaccggttg tttatatcca cgacctgccg acaggcaagc
      301 gtgtgatcgt atcgaaccag aaaggcaata acagtgcacc ggcgtggtcg ccggacggcc
      361 gcaagcttgc ggtcgccctg tcgactaccg gcaacacgca gatttttcag gtgaacgcag
      421 acggtagcgg tttgcgtcgc ctgacactcg gcagctcgat tgacaccgag ccggcttact
      481 ctcccgatgg caacacgatt tatttcacga gcgaccgcgg cggccagcct cagatctaca
      541 agatgtcggc gaacggcgaa agcgccggcc aggcacagcg cgtcacattc acgggcaatt
      601 acaatacaag cccgcgagtg agcccggacg gcaagcagat tgcgtacatt tcgcgtgttg
      661 gcggcggctt caagttgtat ttgctggacc tcgcgtccgg cacggcgact ggcctgaccg
      721 acaccacgaa tgacgaatcg cccagttttg cggcgaatgg tcagtacatc ctctacgcca
      781 cccaggtgag cgggcgtggc gtgttggctg ccgtatcgac cgatggtcgt acgcggcaag
      841 tcttgtcgct tcaggggggc agcgtacgcg agccgtcctg gggtccgttc atgcaataaa
      901 cctcacgcaa taacttaagc agcaacacac aaggagagta accatgatgt ctaaaattcg
      961 tatcggcttt gcagtggcga tggtcggtgc attggccgca tgtcattcag gcgtgaagct
     1021 ggatgaaggt gcaaacaaag gcgcgatcgg cacgcaaccc gacgcgaacg cagttcaaca
     1081 ggtcaatgtc gatccgctga acgacccgaa cagcccgctg gcaaagcgca gcatttactt
     1141 cgacttcgac agctacgctg ttcgtgacga ctatcagccg ctgctgcaac aacacgcgca
     1201 gtatctgaag agccatccgg accgtcacgt cctgatccag ggcaacaccg acgaacgcgg
     1261 cacgagcgag tacaacctgg cgctgggcca gaagcgtgct gaagctgtgc gtcgcgcaat
     1321 gtcgctgctg ggcgtggctg attcgcagat ggaagccgtg agtctgggca aggaaaagcc
     1381 gcaggcaaca gggcatgacg agtcatcgtg ggcgcagaat cgccgcgctg acctcgctta
     1441 tcaacagtaa ttaaactgtc acgggtgagt cgccgtatgt tgtatcgctt cccctcgctg
     1501 cgcgcggtcg cagttgcttg tttgttaggt tcggccatgg tcggcgggtc ggcgcacgcg
     1561 gcgttgttcg acgacaacga agcgcgtaaa gccgtgctcg atttgcgcac gaaaacggac
     1621 agcctggcta gccagttgtc cgccgctcag cgcacgatcc tcgatcaatc gaatcgtctc
     1681 gaccagttga atcagcaggt cgctacgctt cgaggccaga atgaggactt ggccaaccaa
     1741 ttgacgacgt tgcaaaagca gcaaaaggac tactacgccg acctcgatgg ccggctgaaa
     1801 aagttcgaac cgcagcagca gacggtggat ggtgtgcaag ggacggtgca gcccggtgag
     1861 actgaatcgt tcaacgcggc atcgacgcag ttccgtaatg gcgacttcaa gaacgctgct
     1921 gcgtcgttca aagttttcgt cgcgaagtat ccggacagcc cgtaccagcc gaccgcgcaa
     1981 tattggctag gcaatgcgca gtatgctctg cgtgattaca agggttcgac agcaacctgg
     2041 caaaatctgg tgaagaattt cccgacgcat ccgcgggcgc ccgatgcgct gctcgcaatc
     2101 gcgaacaacc agattgagca gggtcag
//
LOCUS       DATGBK010001015         4167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_58616, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001015 DATGBK010000000
VERSION     DATGBK010001015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58616"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..152)
                     /locus_tag="VKJ77_14145"
     CDS             complement(<1..152)
                     /locus_tag="VKJ77_14145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HMC46457.1"
                     /translation="MSHPVTATTSVPILDTLKRGVLGVIAWLFALLLFFPIFWMTITA
                     FKTEQQA"
     gene            complement(149..991)
                     /locus_tag="VKJ77_14150"
     CDS             complement(149..991)
                     /locus_tag="VKJ77_14150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HMC46458.1"
                     /translation="MPSTAVLFLWMAIPLAMTIWYSFSRYNLLNPDVKGFAGLDNYEF
                     LATDPAFLPSIVHTLTLIGSVLLITVVGGVLLAVLFDRKFYGQGIARLLVIAPFFVMP
                     TVSALIWKNMILHPVYGLIAQLMRSLGLQPIDWFGDYPLFAVIVIVAWQWLPFAFLIL
                     FTAIQSLDQEQKEAARIDGAGAFAMFFYITLPHLKRAIAVVVMMETIFLLSIFAEIYT
                     TTGGGPGTATTILSYLIYALGLQQFDVGLASAGGILAVVLANVVAFFLVRMLAKNLKG
                     EYES"
     gene            complement(1197..2540)
                     /locus_tag="VKJ77_14155"
     CDS             complement(1197..2540)
                     /locus_tag="VKJ77_14155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HMC46459.1"
                     /translation="MKRANFTLKNLPMRSLALAAFAVAAIAPITAKAATVTIATLNNP
                     DMIELKKLSPAFEKANPDIQLKWVILEENVLRQRATTDITTNSGQFDVMAIGTYEAPQ
                     WGKRGWLAPMTNLPASYDLDDVVKTARDGLSYNGQLYALPFYVESSMTYYREDLFEAA
                     GLKMPDQPTYAQIKQFAAKLTDKSKGQYGICLRGKAGWGENMAFFSTVVNTFGGRWFD
                     EKWQAQLDTPEWHKALTFYSDLLKNDGPPGASSNGFNENLTLMSSGKCAMWIDATVAA
                     GMLYNKAQSQVADKIGFAAAPVAVTPKGNHWLWSWSLAIPKTSKSQDAAKKFATWATS
                     KEYIELAAKDEGWASVPPGTRKSTYANPEYKKAAPFGDFVLSAIESASPTDATLQKVP
                     YTGVQFVGIPEFQSFGTVVGQSIAGVVAGQTTVDAALTAGNAAANRAVKQAGYQK"
     gene            complement(2755..3528)
                     /locus_tag="VKJ77_14160"
     CDS             complement(2755..3528)
                     /locus_tag="VKJ77_14160"
                     /EC_number="1.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015876870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-iditol 2-dehydrogenase"
                     /protein_id="HMC46460.1"
                     /translation="MRLQDKVAIVTGAASGIGEAVTKRFLDEGAKVVVVDLKDETELA
                     QRFPDSAGRVLALKADVTKREDLERIVSATVDKFGGIDILFNNAALFDMRPILDESWD
                     IFDRLFSVNVKGMFFLMQLVAQRMVEQGRGGKIVNMSSQAGRRGEALVSHYCATKAAV
                     ISYTQSAALGLAQHGINVNSIAPGVVDTPMWETVDALFAKYENRPLGEKKRLVGEAVP
                     LGRMGRPFDLTGAALFLVSADSDYITAQTLNVDGGNWMS"
     gene            3958..>4167
                     /locus_tag="VKJ77_14165"
     CDS             3958..>4167
                     /locus_tag="VKJ77_14165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004189646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC46461.1"
                     /translation="MSKLAAAILTCAALLSASFCGTATAQTASTGVVPVVAAENFYGD
                     VAQQVGGPNVAVTSILSNPDQDPHLF"
BASE COUNT          817 a         1239 c         1238 g          873 t
ORIGIN      
        1 gcctgctgtt cggtcttgaa cgccgtgatg gtcatccaga agatcgggaa aaacagcagc
       61 agtgcaaaca gccacgcaat cacacccagc acgccgcgct tgagtgtatc caggatcggc
      121 acggacgttg ttgcggtaac gggatggctc atgattcgta ctcccctttc aggttcttcg
      181 cgagcatgcg caccaggaag aatgcaacga cgttcgccag cacgaccgcc agaatgccgc
      241 cggcagaagc caggccgacg tcgaattgct gcaggccgag cgcatagatc aagtacgaca
      301 ggatggtggt tgcagtgcct gggccgccgc cggtcgtcgt atagatttca gcgaagatgg
      361 agagcaggaa aatggtttcc atcatcacca ccacggcaat cgcgcgtttc aagtgcggca
      421 gtgtgatgta gaagaacatg gcgaacgcgc cagcgccatc gatgcgtgcc gcttccttct
      481 gctcctggtc cagggattga atcgcggtga agagaatcag gaacgcgaac ggcagccact
      541 gccacgcaac gatcacgatc accgcaaaga gtggatagtc gccaaaccag tcgatcggct
      601 ggagccccag cgatcgcatc aactgcgcta tcaggccata caccggatgc aggatcatgt
      661 tcttccagat cagcgcgctg accgtgggca tgacgaagaa cggcgcgatc accagcagcc
      721 gcgcaatgcc ctgaccgtag aacttgcgat cgaacaatac ggcaagcagc acaccgccca
      781 ctactgtaat cagcaacacc gatccaatca gcgtcagcgt gtgaacaatc gagggaagga
      841 aggccggatc agtggccagg aattcatagt tatcgagacc ggcaaaccct ttgacatcgg
      901 ggttgagcag gttgtaccgc gagaacgaat accagatggt catcgcaagc gggatggcca
      961 tccacaggaa cagtacagcg gtcgacggca tgatgagcca gcggaccgac ttcgcgcgct
     1021 tcttgtcgcg cgctgcggcg gattccgcgt aaccgtctgt gaggggggga ttaagttgac
     1081 tcatgatcgt gtcacctctc gatgatgatg cgcaggccgc gcgcttgacg cttcttcaca
     1141 gaagcggcgc ggcccgctgt cctacattag gcgcaacaag ttgctgcttt gggcccttac
     1201 ttctggtacc cggcctgttt cacggcacga ttggctgcgg cgttgccggc tgtcagcgcg
     1261 gcatcaacag tcgtctgtcc ggcgaccaca ccggcgattg attggccaac cacggtaccg
     1321 aacgactgga attcaggaat cccgacgaac tgaacaccgg tgtacggcac cttttgcagc
     1381 gttgcatcgg tcgggctcgc cgattcgatt gcgctcagca cgaagtcgcc gaacggcgct
     1441 gctttcttgt attccggatt ggcgtaggtc gacttgcgcg tacccggggg aaccgaggcc
     1501 cagccttcgt ccttcgcagc cagttcgatg tactccttcg acgtagccca ggttgcgaac
     1561 ttcttcgcgg cgtcttgcga cttcgaggtt ttcggaatcg cgagcgacca cgaccacaac
     1621 cagtggttgc ccttcggcgt gacggcgacc ggcgctgctg cgaagccaat cttgtcagcc
     1681 acttgcgact gcgccttgtt gtacaacatg cccgccgcca ccgtcgcgtc gatccacatt
     1741 gcgcacttgc ctgaggacat cagcgtcagg ttctcgttga aaccattcga gctggctccc
     1801 ggggggccgt cgttcttcag caggtccgag tagaacgtga gggccttgtg ccattccggg
     1861 gtatcgagtt gggcctgcca tttctcgtcg aaccagcggc cgccgaacgt gttcacgacg
     1921 gtggagaaga acgccatgtt ctcgccccaa cccgctttgc cgcgcaggca gatgccgtac
     1981 tggcctttgg atttatcggt gagcttggcg gcaaattgct tgatctgggc gtaggtcggc
     2041 tgatcgggca tcttcaggcc agcggcttcg aacaggtcct cgcggtaata cgtcatcgag
     2101 ctttcgacgt agaacggcaa tgcgtacaac tggccgttat acgagaggcc gtcgcgggcg
     2161 gtcttcacca cgtcgtcgag atcgtagctg gccggcaggt tcgtcatcgg cgcgagccat
     2221 ccgcgcttgc cccactgggg cgcttcgtac gtgccgatcg ccatcacgtc gaactggccg
     2281 ctattcgtgg tgatgtcggt cgtggcccgc tggcgcagca cgttttcttc cagaatgacc
     2341 cacttcagtt gaatgtccgg attcgctttt tcgaatgccg gcgacagctt cttcaactcg
     2401 atcatgtccg ggttgttaag tgtagcgatc gtcacggtcg cggctttggc tgtgattggc
     2461 gcaatcgcgg caacggcgaa tgcagcgagt gcgagcgagc gcatcggcag gttcttgagg
     2521 gtgaagttgg cgcgtttcat gttgtttcgt ctcctttatc gttagcacgg gcgctggtct
     2581 tgcgggctta cctgtggcgt cgatcgttaa actgatcgtt gcgttgcttg aagcagtcga
     2641 tactcgggta gtacaggtgt tgctttaatt actttcgcta atgatcttca ctgcggcggc
     2701 tcggcggtga cattcggatg catgcgtgtg ttggcacgca tgcaaggcga gccgtcaact
     2761 catccagttg ccgccgtcca cgttcagtgt ttgtgccgtg atgtagtccg aatccgccga
     2821 taccaggaac aatgccgcgc ccgtcaggtc gaacggccgg cccatgcggc cgagcggcac
     2881 ggcctcgcca accagccgct tcttttcgcc gagcgggcgg ttttcgtact tcgcgaagag
     2941 tgcgtcgacc gtctcccaca tcggggtatc gacaacgccc ggtgcgatgc tgttcacgtt
     3001 gatgccatgt tgcgcgagac ccagcgcggc agattgcgtg tagctgatca cggcggcttt
     3061 ggttgcgcaa tagtgcgaaa ccagcgcctc gccgcgacgt ccggcctgcg acgacatgtt
     3121 cacgatcttg ccgccacggc cctgttccac catgcgctga gcaacgagtt gcatcaggaa
     3181 gaacatgccc ttcacgttga ccgagaagag gcggtcgaag atgtcccagg attcgtcgag
     3241 gatcgggcgc atgtcgaaga gcgccgcgtt gttgaagaga atgtcgatgc cgccgaattt
     3301 atcaacagtg gccgagacga tgcgttccag gtcttcgcgc ttcgtgacat cggctttcaa
     3361 agccagcacg cgcccggcgc tatccgggaa acgctgcgcc aactcggttt cgtctttcag
     3421 atcgacgacg acgactttcg cgccttcgtc cagaaatcgc ttcgtgaccg cttcgccaat
     3481 cccgcttgcc gcacccgtca cgattgctac cttgtcctgc agtctcacgg ctatctccgg
     3541 ttcgtctctg attcgatttc ttgaaaaatc cacgcttgaa acgcgtgata gtgagcgaac
     3601 gctctatgcg cgatcaattg ctctctgttt ggtcgaatga tcggtgaggc gtgaggcggt
     3661 gtcaaggcac gccgccatgt ttcgatggtg cggcgcgcaa agcacctcaa aactgcggga
     3721 aaaccccaac cagcgggggt ttgcggggaa tcggagggca cctgaagagc gtctcggaca
     3781 ggcttttgta atacgtcagt ggatgcacaa cgcagtgata cgttatatca tcgcgatcga
     3841 ctcaagggtc tcggcagagc gcgtcacggc gactgccgcc gttggcacaa gagcacgcga
     3901 aacgcggacg cttcccgcac ccaacagcct ctatccaccc tccttccagg aaacaccatg
     3961 agcaagcttg ccgccgccat cctgacctgc gccgcccttt tatctgccag cttctgcggc
     4021 acagccacgg cgcaaacggc gtccacgggc gtggtgccgg tggtcgcggc cgagaatttc
     4081 tatggcgatg tggcccagca ggtcggcggc cctaacgtgg cggtgacaag catcctgtcc
     4141 aatcccgacc aggacccgca tctcttc
//
LOCUS       DATGBK010001016         1987 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290074, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001016 DATGBK010000000
VERSION     DATGBK010001016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290074"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..582)
                     /locus_tag="VKJ77_14170"
     CDS             complement(<1..582)
                     /locus_tag="VKJ77_14170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007854306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase family protein"
                     /protein_id="HMC46462.1"
                     /translation="MYKLKAAEWHPQHFKWEVKDRVGTITLNRPERKNPLTLESYAEL
                     RDTFHKLQYAEDVRVIVFTGEGGNFCSGGDVQEIIGPLTKMDMSGLITFTRMTGNLVK
                     EMRTCPQPVISAVDGICAGAGAIISMASDLRYGTPECKTAFLFVRVGLAGCDMGACAI
                     LPRIIGQGRASELFYTGRAMTAQEGHAWGYYNEL"
     gene            complement(621..1367)
                     /locus_tag="VKJ77_14175"
     CDS             complement(621..1367)
                     /locus_tag="VKJ77_14175"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC46463.1"
                     /translation="MRLDGKTAVITGAASGIGRATAETLAQAGAHVLLGDIAVEAGEQ
                     SAAAIRAKGYGADFVRLDVTDLDSIDAFKRAAYAGRGHVDIVANVAGWGKMEPFVKNS
                     PDFWRKVIDLNLFGPIAVARAFLDAMIERKAGKIVTVSSDAGRVGSLGESVYSGAKGG
                     AIAFTKSLAREMARFNINVNCVCPGPTDTPLLAAVPEKHREAFVRVTPMGRLAKPSEI
                     ADAVLFFASSRADFVTGQTLSVSGGLTLAG"
     gene            complement(1618..1809)
                     /locus_tag="VKJ77_14180"
     CDS             complement(1618..1809)
                     /locus_tag="VKJ77_14180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46464.1"
                     /translation="MRRQADGDRRSNALWLASDGKALPGKLTGLVRAHEERLVAGFSQ
                     ADHARPACLLQRILHGKSS"
BASE COUNT          385 a          630 c          575 g          397 t
ORIGIN      
        1 aagttcgttg taatagcccc aggcatgccc ctcctgagcc gtcatggcgc gcccggtgta
       61 gaacaactcg gaggcgcggc cctgcccgat gatgcggggc agaattgcgc aagcgcccat
      121 gtcgcacccg gccaggccga cgcgcacgaa gagaaacgcg gtcttgcact ccggtgttcc
      181 gtaccgcagg tcgctcgcca tcgaaatgat cgcccccgcg ccggcgcaga taccgtcgac
      241 tgcggaaata acgggctgcg gacaggtgcg catctctttc accaggtttc cggtcatgcg
      301 ggtgaatgta atcagcccac tcatatccat cttggtcagc gggccgataa tttcttggac
      361 gtcgccaccg gagcagaagt tgccgccctc gcctgtaaat acaataacac gcacgtcttc
      421 ggcgtattgc agcttatgga acgtgtcgcg cagttcggcg tagctttcga gcgtcagcgg
      481 attcttgcgc tcgggacggt tcagcgtgat cgtgcccacc cgatccttga cctcccattt
      541 gaaatgctgc gggtgccact cggcggcttt gagtttatac ataggattct ccagttagtt
      601 ggtaatggaa actcgcagcg tcagccggcc aaggtgagtc cgccgctgac gctcagggtc
      661 tgaccggtga cgaaatccgc ccggctgctg gcaaagaaca acacggcatc agcgatctcc
      721 gagggtttcg ccagacgccc cattggtgtg acgcggacga aggcttcccg gtgtttctcc
      781 ggcaccgccg ccagcagcgg cgtgtcggtc ggtcccggac agacgcagtt cacgttgatg
      841 ttgaatcgcg ccatttcccg ggcaagcgac ttggtaaacg cgatcgcccc gccttttgcg
      901 cccgaataga ctgactcgcc caggctgccg acccgcccgg cgtcgctgga aacggtgacg
      961 atcttgccgg ctttgcgctc gatcatggcg tcgaggaacg cgcgcgccac ggcgatcggc
     1021 ccgaacaggt tgaggtcgat taccttgcgc cagaaatcgg gactgttctt gacaaaaggc
     1081 tccatcttgc cccagcccgc gacgttggcg acgatgtcga cgtgcccgcg accggcatag
     1141 gctgcgcgct tgaatgcgtc gatcgagtca agatcggtca catcgagtct gacgaagtcc
     1201 gcaccgtagc ctttggcgcg gatcgcggcc gcgctctgtt cccccgcttc cacggcaatg
     1261 tcgccgagca gcacatgcgc tcccgcctgc gccagtgttt ccgcagtcgc ccgcccgatt
     1321 cccgatgccg ccccggtgat caccgctgtc ttgccgtcta gtcgcatttt ctactcctta
     1381 atccaggaaa attctttgtg tccgatattc gtatgaaacg ttgtgccggc atcatccgct
     1441 caggattccc atcgatcagg gccgccgtcg cgcaccggcg attctccagc agtacaagcg
     1501 aatctcatcg ccggtaacat aataactgaa tgaatgttca ttcagttgac gaacgatagc
     1561 atagaccaag gccaaaaggc aagaggctat gctcaagcac ccttaaagcc ttcacgctta
     1621 cgaactcttg ccgtggagaa tgcgctgcag cagacacgcc ggtcgcgcgt ggtcggcctg
     1681 ggaaaaaccc gcaaccaggc gctcctcgtg ggctctgacc aaccccgtga gcttgccggg
     1741 cagggcttta ccgtcgctgg cgagccacaa ggcattggaa cggcgatcgc catcggcttg
     1801 ccgacgcacg accggtttcc ttgcctacag cgtgtcgatt acgcttgcgg cggtagaccg
     1861 gtcgagacgg attgcgccgg ccaaggtagg ctgcttaaaa accggattcg cgtcgatcac
     1921 cacgagcact ccgaacaagc ccggcctgat cgcatgtgcg ccgatggttt cctggaagtc
     1981 actgaaa
//
LOCUS       DATGBK010001017         1950 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_335918, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001017 DATGBK010000000
VERSION     DATGBK010001017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1950
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335918"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..165)
                     /locus_tag="VKJ77_14185"
     CDS             complement(<1..165)
                     /locus_tag="VKJ77_14185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009897449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC46465.1"
                     /translation="MTRVLIADDHALVRDGLRHILLSANGLEVAGEASDGATTMTMIR
                     ATPADVLVLDL"
     gene            complement(162..1271)
                     /locus_tag="VKJ77_14190"
                     /pseudo
     CDS             complement(162..1271)
                     /locus_tag="VKJ77_14190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775736.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
     gene            1634..>1950
                     /locus_tag="VKJ77_14195"
     CDS             1634..>1950
                     /locus_tag="VKJ77_14195"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HMC46466.1"
                     /translation="MYKRILVALDGSLSASLALEEALKLAQAVDATLMVACVVSHDLC
                     DVTGGVIEEETGDAGAHWQLDHVRDLCERSGVHSGVRCITQIIDAHGASIPGALMQAA
                     QAF"
BASE COUNT          345 a          589 c          650 g          366 t
ORIGIN      
        1 caggtcgagg accagcacgt ccgccggggt cgcgcggatc attgtcatgg tggtagcgcc
       61 gtcgctggct tcgccagcga cttccaggcc gttcgcgctg agcaggatat ggcgtagccc
      121 gtcacgcacg agggcgtggt catcggcgat caatactcga gtcattgcag cggttcttcc
      181 tcggtgttgt ccggattgtc ggagaaagcg tcgtcttgtt gcaaggtcga gagcgggaat
      241 gtcacggtca cagcgaaccc ttgtccgatg ccggattcga tcgagaccga cccgtccagc
      301 ccgtgcgccc gctcgcgaat gccgataaga ccaaacgact tgcgcccggt atcggcgcgc
      361 tcatgggcgc ctatgccgtc gtcggcaatg cgcaggatgc agcgatcacc ctccagatat
      421 aacgccagat cgacacgggt agcttgcgca tggcgcgcca cgttggtcag cgcttcctgc
      481 acgatccgga acacggcggt cgcgccgtcg cggctgaaaa tggtgtgcct cgcgtcgatc
      541 cgccgctcga cgtcaatgcc gtagcggttc gtaaagtcga tcgccagcca gtcgatggcc
      601 gggaccagtc ccaggtcatc gagcatcacc gggcggaggt cggcggcgat ccggcgcatc
      661 gaggcgacgg ttgcatcgat caggcgctgc atgccgcgca attgcgcgcg cgcctcggcg
      721 cccgttccag cgctaagttc gagtgaggat atatccattt tcaacgcggt caattgctgg
      781 cccaggtcgt catgcaactc ccttgcgatg cgggactttt cttcctcgcg gatattcagc
      841 aaatttgcgg agagctcgcg cagttcctcg tgcgagcggt gcagagagcg ttcagcgtcg
      901 atttgcgcgc tgatgtcgcg cagcatcacg gtgtaaagct tgccgttttc atcgccgaat
      961 tgagaaatcg atgcttcgaa cgggaactca cccccggtcg cgcgcaggcc gtacagtatg
     1021 cgccgcccgc ccatttgccg gtcggacaca ccggtaacgc cgaactggcg tacatgcgct
     1081 tcgtgacccc ctcgaaagcg ctcgggcacg aagcgggcaa gggaggtgcc gagcgcgtcg
     1141 gccgccgcgc agtcgaacag acgttccgcc atcggattga acatgacgat acgctggctt
     1201 tcgtcgatgg taatgatcgc ttccatcgac gaccggatga tgccgcgcag tcgcgcttcg
     1261 tcaaggcgtg ttgaagccgg taccgtggct ttcgtggcct tcccggtctt cgtgcccttg
     1321 tgcctgagcg tcacgaaggc ggcgcctgcg gtgagcagga gggcgccggc catgccgacc
     1381 atgccggtta cgcgggcctg ccgaccgtcg ccgcgctgcg aggccggctg cgatgccgta
     1441 ttacgccgtg gcgcggacat ggggtctccg ggaaaagggg gaatgcgtgc cgctgaggtt
     1501 gtgcggatca taccgtgccg ctgcggacgt gatttgtgcg gcgcaccccc ggccgcgtga
     1561 attgatgtgg atcaagtgac cggcaggcct gcacgcggac actgaagcat gaataacatc
     1621 cggggagcgg gtcatgtaca aacgaattct ggtagcgctc gacggcagcc tcagcgcgag
     1681 cctcgcactt gaagaggcgc tcaagctggc gcaggcagtc gacgcgacgt tgatggtggc
     1741 gtgcgttgtg tcgcacgatc tttgcgatgt cacgggcggg gtgatcgaag aagagacggg
     1801 cgatgccggc gcgcactggc aactcgatca tgtgcgcgac ttgtgcgagc gtagcggggt
     1861 acacagtggg gtacgctgca tcactcagat aatcgatgca cacggtgcaa gcatcccggg
     1921 cgccctcatg caggcggccc aggcattcga
//
LOCUS       DATGBK010001018         2137 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127641, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001018 DATGBK010000000
VERSION     DATGBK010001018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127641"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            5..>2137
                     /locus_tag="VKJ77_14200"
     CDS             5..>2137
                     /locus_tag="VKJ77_14200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017328744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HMC46467.1"
                     /translation="METKEQQQAKQALSDRKASDIAHDDVPEPIRSTAGVREVPPSTP
                     EANTDGAFVATEHTNYATERQFVLKAGNTFVVNDANGDIRGNDDGLFVNDTRVLSQLR
                     LTFGGRSPSLLSGSVSSDNAVFTAHMTNRPLPIIGGASTPEGVIHVERRRVLSRHVLH
                     EAIVLTNYGTEPATVPLSINFAADFHDMFEVRGSTRPKRGSMREPCIEDGVVVLRYTG
                     LDEVERTARIQFSPAPHSLSVSRADYVLRIQSETAMSIYLSITAVTHALSDASAESKK
                     IAEEGAECAPESGRPAIREALVDAHRRMRERRRSVARVRSSNPLFSEWIDRSLADLGL
                     LTTDLETGPYPYAGIPWFSTAFGRDAIITSLQMLWIDPSLARGVLRFLAAHQAREDSA
                     FRDAEVGKIMHETRNSEMAATGEVPFAMYYGGVDSTPLFVALAGAYAERTGDTALIDE
                     LWPALQLAAQWIARHCDKNEFGLLSYQRATEAGLANQGWKDSGDSVFHADGTFPVGPI
                     SLVEVQAYASTAFATMARFARQRNAPEQASDFEQRAQNIRERVETMFWMPESEFYGIA
                     LDGKGELCKVLASNAGHLLAFDLVERSRGEAVARQLESTLFNTGWGVRTLAAGQPRFN
                     PMSYHNGSVWPHDSAMCARGLARYGDRSGAVRLLQALFEAAVTFDMRLPELFCGFTRQ
                     RGERPIGYPVACLPQAWAAGSPFMILEAC"
BASE COUNT          391 a          658 c          692 g          396 t
ORIGIN      
        1 tgtaatggaa acgaaggaac aacagcaagc aaagcaggcg ctcagcgacc ggaaggctag
       61 tgatatcgct catgacgacg tgcccgagcc aatccgcagc acggccggcg ttcgcgaggt
      121 tcctccgtcg acgcccgaag ccaacacgga cggcgcattt gtcgcgaccg aacatacgaa
      181 ctacgcgacc gagcgccagt ttgtgctcaa ggccggcaat accttcgtgg tcaacgacgc
      241 gaatggcgac atccgcggca atgacgacgg tcttttcgtg aacgacaccc gcgtgttgtc
      301 ccagttgcgt ctgaccttcg gcggacgctc gccgtcgctc ctgtccggca gcgtgtcgag
      361 cgacaacgct gtttttaccg cgcatatgac caaccggccg ctgccgatca tcggcggggc
      421 gagcacgccc gagggcgtca tccatgtcga gcgtcgccgg gtgttgtcga ggcacgtgct
      481 gcacgaagcc atcgtgttga ccaactacgg cacggaaccg gctaccgtgc cgctttcgat
      541 caacttcgcc gccgacttcc acgacatgtt cgaagtgcgc gggtccacgc gcccgaaacg
      601 cgggtcaatg cgcgagccgt gcattgaaga cggcgtagtc gtgttgcgct atacgggtct
      661 ggatgaagtc gagcggactg cgcggatcca gttttcgcct gcgccccatt cgctctcggt
      721 cagtcgcgcg gattacgtgc tgcggatcca gtcggaaacg gccatgtcga tctacttgtc
      781 gatcacggcc gtcacgcacg cgttgagcga cgccagcgcg gagagcaaga agattgccga
      841 ggaaggcgcc gaatgcgcgc cggagtcggg gcggccggct attcgcgagg cacttgtcga
      901 tgcccatcgg cgcatgcgcg agcggcggcg ttcagtggcg cgcgtgcgct cgagcaaccc
      961 gttgttcagc gaatggatcg atcgttcgct cgccgatctc ggcttgctga ctaccgatct
     1021 tgaaacggga ccgtatccgt acgcgggcat tccgtggttt tcgacggctt tcggccgcga
     1081 cgccatcatt acttcgctgc aaatgttgtg gatcgatccg tcgcttgccc gcggcgtgct
     1141 gcggtttctc gcggcgcacc aggcgcgcga ggactccgca tttcgcgatg cggaagtggg
     1201 caagatcatg cacgagaccc gcaacagcga aatggctgct acgggcgaag tgccgtttgc
     1261 gatgtactac ggcggggttg acagcacgcc gctgttcgtc gcgctggctg gcgcatacgc
     1321 cgagcgaacg ggtgacacag cgctgatcga cgaattgtgg ccagcgctgc agctggccgc
     1381 gcaatggatc gcacgtcatt gcgacaagaa cgaattcggc ttgctgagct accagcgtgc
     1441 aacggaggcg gggcttgcca accagggctg gaaagacagc ggcgactccg tgtttcacgc
     1501 cgacggcact ttcccggtcg gaccgatctc gctcgttgaa gttcaggctt acgcatccac
     1561 cgcatttgcc acgatggctc gctttgcgag gcagcgcaac gcaccggagc aagcatcgga
     1621 cttcgagcag cgcgcgcaaa acatccgcga acgcgtagag acaatgttct ggatgcccga
     1681 gtcggagttc tacggtatag cgctcgacgg aaagggcgag ctgtgtaagg tgttagcgtc
     1741 gaatgcggga cacttgctgg cctttgacct ggtcgagcgc agccgaggcg aagcagtcgc
     1801 gcgccagctt gagtcgacct tgttcaacac cggctggggc gttcgcacgc tggcagcagg
     1861 ccagccgcgc ttcaatccta tgtcgtacca caacggctcc gtgtggccgc acgacagcgc
     1921 catgtgcgct cgcggacttg cgcgctacgg tgaccgcagc ggagcagtgc gtctgctaca
     1981 ggcactgttc gaagcggccg tcacgttcga tatgcgcctg cccgagttgt tctgcggctt
     2041 cacccggcaa cgtggcgagc ggccgatcgg ctatccggtc gcgtgtttgc cgcaagcctg
     2101 ggcggccgga tcgccgttca tgatcctcga ggcatgt
//
LOCUS       DATGBK010001019         1939 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_150481, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001019 DATGBK010000000
VERSION     DATGBK010001019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150481"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /locus_tag="VKJ77_14205"
     CDS             <1..535
                     /locus_tag="VKJ77_14205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46468.1"
                     /translation="GGLKQRVAIARAFAGDPRVVVCDEPTSALDVSVQAAILNLLADL
                     QRERGVSYVFISHDLHVVRYLSDRIAVLYLGRLMEIGRATDVFDGPHHPYTEALLSSI
                     PAIADEPQARERIRLSGELPSAANPPSGCVFHTRCPRKIGAICEQEEPPYAHAADGHR
                     IRCHIPVAELKRLQKPE"
     gene            623..1042
                     /locus_tag="VKJ77_14210"
     CDS             623..1042
                     /locus_tag="VKJ77_14210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46469.1"
                     /translation="MKRNISAAFAFAAFSALGCASIAHAQQSTQPPQVDPSFSAYTLA
                     QECSQKSDNTAQGQCVGAVRGIVRGYQYGVLFLGQRSQLQANETQRVSLCLSNTPVST
                     LVDEFLADAKQVDEASLKRTPAEVAVLGSVHSHHACT"
     gene            complement(1055..1846)
                     /locus_tag="VKJ77_14215"
     CDS             complement(1055..1846)
                     /locus_tag="VKJ77_14215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006398516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC46470.1"
                     /translation="MGQGTWEMGDSARTRNAEIAALKTGADLGMTVIDTAEMYGEGES
                     EKLIAEALKDRREELFIVSKVYPHNGSESGVKAACERSLKRLQTDRIDLYLLHWRGGE
                     DLEGVIGGFEALKAQGKIRHWGVSNFDTEDMVELFALENGNRCATNQILYNVARRGPE
                     FELLPWLREHNMPAMAYSPVDHARLPKQSVLNDIAKARGLSAMQVALAWVLQQPQVMA
                     IPKAGTVAHVIENAAAREVNLSTEELSLIDTQFKPPKSKRPLEML"
BASE COUNT          354 a          596 c          563 g          426 t
ORIGIN      
        1 gggcgggttg aaacagcgcg tggcgattgc ccgtgcgttc gccggcgatc cgcgcgttgt
       61 ggtctgcgac gaacccacgt ccgctcttga tgtctccgtg caagccgcga tcctgaacct
      121 gctagccgac ctgcagcgcg agcgtggcgt gagttacgtg tttatctcgc acgacctgca
      181 cgtggtgcgt tatttgtccg atcgtatcgc ggtgctgtat ctcggccggc tgatggagat
      241 tggccgcgcg acggacgtgt tcgacgggcc gcatcatcct tataccgagg cgttgttgtc
      301 gtcgattccg gcaatcgccg atgaaccgca ggcacgcgag cgcatccgtc tctcgggcga
      361 gttgccgagc gcggcgaatc caccctcggg gtgcgtgttc catacgcgct gtccgcgcaa
      421 gattggagcg atctgcgagc aggaagagcc gccatacgcg cacgccgccg atgggcaccg
      481 gattcgatgc cacattcccg tggctgaact aaagcgcttg caaaagcctg aataaacccg
      541 cgcgctaaag ttggagtcga aggaaccatt cggcgctcgt tccctcatat cgagttcaac
      601 gttcgacatg agggatcaca acatgaagcg aaacatctcc gcggcgttcg cgtttgcagc
      661 tttctccgcg ctgggctgcg cctccattgc ccacgcacag caaagcactc agccacccca
      721 ggtcgatccg agtttctccg cctatacgct cgcgcaggaa tgttcgcaga agtccgataa
      781 caccgcgcag ggtcaatgcg tgggggcggt acgcggcatt gtgcgagggt accaatacgg
      841 cgtgctgttc ctgggtcagc gctcgcaact gcaggccaat gaaacgcagc gtgtgtcgct
      901 gtgcctgagc aatacgccgg tctcaacact ggtcgatgaa ttcctcgccg atgcaaagca
      961 agtcgatgaa gcgtcgctca agcgcacgcc cgccgaggtc gccgtgcttg ggtccgtgca
     1021 ttcgcaccac gcctgcacgt agacggttga gggtttaaag catttccagt gggcgttttg
     1081 atttcggcgg tttgaactgg gtgtcgataa gactcagttc ttccgtcgac aaattcacct
     1141 ctcgcgctgc cgcgttctca atcacatgag cgacagtccc cgctttcggg atcgccatga
     1201 cctgcggctg ttgcaagacc cacgcgagcg cgacttgcat agcagacaga ccgcgggcct
     1261 tcgctatgtc gttcaggacg ctttgtttcg gcaggcgcgc gtgatcgacg gggctgtatg
     1321 ccatcgccgg catattgtgt tcgcgcagcc acggcaggag ttcgaattcg ggaccgcgcc
     1381 gggcgacgtt atacagaatc tggttggttg cacaccggtt gccgttttcc agcgcaaaga
     1441 gttcgaccat gtcctcggtg tcgaaattgc ttacgcccca atggcggatc ttgccctgcg
     1501 ctttcaaagc ctcaaagccg ccgatcaccc cttccagatc ttcacccccg cgccaatgca
     1561 gcagatataa atcgatgcgg tcagtctgta gccgcttgag gcttcgttca cacgcggcct
     1621 tcacgccgga ttcgctaccg ttatgcggat aaaccttgct gacgatgaaa agctcctcac
     1681 gccggtcttt caatgcttcg gcgatcagct tttcactctc gccttcgccg tacatttcgg
     1741 cggtatcgat caccgtcatg cccaagtccg caccggtctt cagtgcggcg atttccgcgt
     1801 tacgggttct ggcgctgtca cccatttccc aagtgccctg gcccaaggcg ggaagttgct
     1861 ctccagtgtc gaccggagtt agcgcttagc gcttactccg gtcccatgca cggttgcggc
     1921 cggaagatga acagtcttt
//
LOCUS       DATGBK010001020         2190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_335944, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001020 DATGBK010000000
VERSION     DATGBK010001020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335944"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..865
                     /locus_tag="VKJ77_14220"
     CDS             <1..865
                     /locus_tag="VKJ77_14220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HMC46471.1"
                     /translation="GTPVATGVIDAHAGGIGTVGADGEAESNLGYVFGTSSCTMTTTR
                     SPVFVPGVWGPYFSAMVPDAWLNEGGQSVAGAAIEQLLSMHPATPDARHQAEQAGQSL
                     PVMLASLAAQAADSLSKTVLLAKGLHVVPEFLGNRAPLADPHARAVIAGLGMENDLDS
                     LVALYIAGICSIGYGLRQIIEAQAIAGAPIERVVISGGAGRLDLVRQLLADATGKPVL
                     ATQAEEPVLLGAAMLGSVAGGLFDDVRSAMTKMSHISKTYEPDAGDIAALHEARFRAF
                     KQLQSVAREIR"
     gene            1314..>2190
                     /locus_tag="VKJ77_14225"
     CDS             1314..>2190
                     /locus_tag="VKJ77_14225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin"
                     /protein_id="HMC46472.1"
                     /translation="MLTRTSPALLAEPNLVTEDAQYFEYTSSANPIGAKLISRVPFRT
                     FSPSLYADGATRLVPLDLSAELGCPGPATGPGLSASFLRINAGDALTLDPNATSQVCY
                     VISGAGSVKQAQTSFPFSIGDFFTLPGGHATVLSAEVTATLYYVNDAPLLSYLGTTGV
                     EARFAPTRYPAVEAQAALREVAEQANAGRRNRISVLMGNANFPQTRTVTHVLWAMFGI
                     VPPNSMQKPHRHQSIALDFIAGTSPGVYTLVGTELDGAGNIVNPTRVDWETGMTFVTP
                     PGYWHAHFNETNENAY"
BASE COUNT          442 a          681 c          658 g          409 t
ORIGIN      
        1 cggaacgccg gtcgcgacag gcgtgatcga tgcccatgcc ggtggaatcg gcacggttgg
       61 cgcagacggc gaagccgagt ccaacctggg ctacgtcttc ggcacctcct cgtgcacgat
      121 gaccacgacc cgcagtccgg tcttcgtacc tggcgtgtgg gggccttatt tttcggcgat
      181 ggtgccggat gcatggctca acgaaggcgg gcaatcggtg gcgggcgccg cgatcgaaca
      241 actgctttcg atgcaccccg cgacgcccga tgcccgacat caagcggagc aagcaggcca
      301 gtctctaccc gtgatgctgg ccagcctcgc ggcgcaggcg gcggacagtt tgtcgaagac
      361 cgtgttgctg gccaagggct tgcatgtcgt tccggagttc ctcggaaacc gtgcaccgct
      421 tgccgacccg cacgcgcgag ccgtgatagc aggccttgga atggagaatg acctggacag
      481 tctggtcgcc ctttacattg ccggcatttg cagtatcggt tatggccttc gccagatcat
      541 cgaggcgcag gccatcgcgg gtgccccgat cgagcgggtg gtcatcagcg gcggcgcggg
      601 gcgactcgat ctcgtccgcc aactgctcgc cgatgccacg ggaaagcccg tgcttgccac
      661 acaggcggaa gagcccgtcc tgctgggtgc cgcgatgctg ggcagcgtgg caggtggcct
      721 gttcgacgac gtacgctcgg cgatgaccaa gatgtcgcat atcagcaaga cctacgagcc
      781 ggacgcaggc gacatcgctg cactgcacga ggcgcggttt cgcgctttca agcaattgca
      841 gagcgtggcg agagaaatcc gctagatcac gcggtagacc caccacggcg gtgggaaaga
      901 gcgtggatgc aaacgaatgc cgcggtgaag agaagagata cccgccgatg cggccgccga
      961 aggatcgttc cgagaaattg agaggctctt gacgaccctg aacggtcgat cggtgtccga
     1021 gatcaaacgg ccgctttcgg tacgattgcg gccggccaac gcaatggcct taaacattgc
     1081 cttctcttgc ccaatgcgca acgatcgatg aacttcattg cgacctggca caaaacaaac
     1141 ggcaacgtat tttaaccggt cgctgggtgt gccttctgcg caaaggtgat ttcgacgccc
     1201 ggtacttccg gcaccaggac cccgcgccta aagtcggatc agccttcgga cacggttctc
     1261 acttcgaaaa tggaacccgt gcgaagctcc ctcaaaatca aaaggagcaa accatgctga
     1321 ccaggacatc ccccgcgctt ctcgccgaac caaacctcgt gaccgaggac gcgcaatatt
     1381 tcgaatacac ctcgtccgcc aatccaattg gagcgaagct gatttcacgc gtgccgttcc
     1441 gtaccttctc gccttcgctt tatgccgacg gcgccacccg actcgtgccg ctcgacctgt
     1501 ccgcggagtt gggctgcccg ggtcccgcga ccggtcccgg cttgagcgcc agcttccttc
     1561 gcatcaatgc gggtgacgca ttgacactcg atccaaatgc gacctcgcag gtttgctacg
     1621 tcatcagcgg agcgggtagc gtgaaacagg cccaaacgag ctttcctttc tcgatcggcg
     1681 atttcttcac gctccccggc ggccatgcca ctgtgctgtc cgccgaggtg acggccacgc
     1741 tctattacgt caatgacgcg ccattactct cttatcttgg tacgactgga gtagaggcgc
     1801 gctttgcacc gacacgctat ccggccgtcg aggcgcaagc ggcattgcgc gaggtcgcag
     1861 agcaggcgaa tgcgggtcgc cgcaaccgca ttagtgtatt gatgggcaac gcgaactttc
     1921 cacaaacgcg tacggtcacg catgtgttgt gggcgatgtt tggcatcgtg ccacccaact
     1981 ccatgcagaa accgcaccgg caccagtcga tcgcactcga ctttatcgcg ggaaccagtc
     2041 cgggcgtcta cacgctcgtc ggaacggaat tggacggcgc cggcaatatc gtgaacccga
     2101 cccgcgtcga ttgggagacc ggaatgacat tcgtcacgcc gccgggatac tggcatgcgc
     2161 atttcaatga aacgaacgaa aacgcttatg
//
LOCUS       DATGBK010001021         2695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_266877, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001021 DATGBK010000000
VERSION     DATGBK010001021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2695
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266877"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..365
                     /locus_tag="VKJ77_14230"
     CDS             <1..365
                     /locus_tag="VKJ77_14230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006762136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HMC46473.1"
                     /translation="PIKVVVYNNSLLGFVSMELKAAGYLDTNVDLAKTDFAAIAQGAG
                     IFSIRVEESEDIKEALQKAFAYPGPALVDVVTSKHELAMPPKVELAQAKGFSLYMLRA
                     ILNGRGDEIVELAKTNFR"
     gene            452..742
                     /locus_tag="VKJ77_14235"
     CDS             452..742
                     /locus_tag="VKJ77_14235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46474.1"
                     /translation="MKKFSQIAMVGALAFAFAGTAMAQSGGGGSKTDTSKPAVSPTEP
                     KPHLPHFKHHKKAASETGGTTLHKEDKASHLKGASAAAAASALGTNDKGQPQ"
     gene            complement(857..1738)
                     /locus_tag="VKJ77_14240"
     CDS             complement(857..1738)
                     /locus_tag="VKJ77_14240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46475.1"
                     /translation="METSFLTSFLLVVDTGSMAEAARRLDLTPAAVAQQIRTLEREFG
                     APLLARAGRTVSVTPAGSRIVAQSRGLLRELADLKILANDEYATGELRLGTINTALHS
                     LLPDILARFVSAHPHVKVFIQSGTSNELYEALRQGDVDAAVCTHPAFAMPKTFVWELL
                     REEPLVVIAPQSLANRDAHDLLAHEPLIRYDRSLAGGKEAERYLRRVGIVPNERFELS
                     SLAAIAMMVDRGLGVSLAPDVASPITSALRIARIGLPMESEPRRFGVLWKRASVRGRL
                     IRGLVDCALQCVRGQMV"
     gene            1814..>2695
                     /locus_tag="VKJ77_14245"
     CDS             1814..>2695
                     /locus_tag="VKJ77_14245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007833041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HMC46476.1"
                     /translation="MKSKLFIPGSRPELFAKALASQADALSFDLEDAVSEARKPEARA
                     YLRDFLVDSLHRSNAASSPGERFGGKTIIVRVNAIDSPHFEADLAAVVQAGVNLINLP
                     KPRHADDVRAAANALDVAERANGVTEPIGLLLNIESPGALRRAFELASAHPRVKGLQL
                     GLGDLFEPLGIARRETAAIQQAMFALSMAAGEAGVFAYDSAFADIRDQAGYQAEARLA
                     RSLGFIGKSCIHPSQVALANEVFQPTADEMAHAHRVVEAAAEADAAGRGAYVVDGKMI
                     DGPFVARARAIVAQAASN"
BASE COUNT          552 a          790 c          836 g          517 t
ORIGIN      
        1 tgccgatcaa agtggtggtt tataacaaca gtctgctcgg cttcgtttca atggagctca
       61 aggctgccgg gtacctggat accaacgtcg atctggccaa aaccgacttc gcggccatcg
      121 cgcagggtgc gggcattttc agcatccggg tagaagagtc tgaagatatc aaagaggctc
      181 tgcagaaggc tttcgcttat cccgggccgg cgctcgtgga cgtggtgacg tcgaagcacg
      241 agctggcgat gccgccaaaa gtggaattag cgcaagcaaa aggcttcagc ctctacatgc
      301 tgcgggcgat tttgaacggc cgcggcgacg agatcgtgga actggctaag accaattttc
      361 gctaggaaca ttctgaattc gttgaaattc catgcatttc gaacaacaat gcggtgctgc
      421 aatcaattta caactccagg gagatttggc aatgaagaag ttctcgcaaa ttgcaatggt
      481 tggtgcgctc gcattcgcgt tcgcaggcac ggcaatggct caatcgggtg gtggcggttc
      541 gaagacggac acaagcaagc ctgctgtcag tcccacagaa cccaaaccgc acctgccgca
      601 cttcaagcat cacaagaaag cagcttccga aacgggtggc acgacgttgc ataaggaaga
      661 caaggcatcg cacctgaagg gcgcatcggc tgccgctgct gcttccgccc tgggtaccaa
      721 cgacaagggc caaccgcagt aagcggcaag gccagaagcc cagcgttcgg aacagtatgt
      781 ttcaagcgca ccatacggcg acacgcgcga gcgtgtcgcc gtattgcttt gggcgacgca
      841 aatgagcccg gcactttcac accatttggc cgcgcacgca ctgcagcgcg cagtccacca
      901 ggccgcgaat cagccggcca cgtactgacg cccgtttcca gagcacaccg aagcggcgcg
      961 gctccgactc catcggcaag ccgatccgtg cgatgcgcag ggcgctggtt atcggcgacg
     1021 cgacatccgg tgcgagcgac accccgagcc cacggtcgac catcatcgcg atggctgcga
     1081 gcgagctcag ttcgaagcgc tcgttcggga caatccccac acgcctcaga taacgctccg
     1141 cttctttacc gcccgcgagc gagcggtcgt agcggatcag cggctcgtgc gcgaggaggt
     1201 catgcgcatc gcggttagcc aggctttgcg gcgcgattac caccagcggt tcttcacgca
     1261 gcagttccca tacgaaggtt ttcggcatcg cgaaggcagg gtgcgtgcag acagctgcat
     1321 caacgtcgcc ttgtcgcaat gcttcataca attcgttcga ggtgcccgac tggatgaaca
     1381 ccttcacatg cggatgagcg ctgacaaaac gcgcgaggat gtccggcaga aggctatgca
     1441 gcgcagtatt gatcgtgccg agcctgagct caccggtcgc gtattcgtcg ttggcgagaa
     1501 tcttcaggtc ggcgagttcg cgcagcaaac cccgcgactg cgcgactatc cggctacctg
     1561 ccggcgtgac cgacaccgtc cggccggctc gcgcgagcag cggcgcgccg aattcgcgct
     1621 cgagcgtgcg gatctgctgc gcgaccgcag cgggtgtcag gtccaggcgg cgagcggctt
     1681 cagccattga gccggtatcg acgaccagca ggaaactggt taggaacgag gtctccacaa
     1741 agatactttt agttgatttt gaaggcacat tctatcgctt tatcttcatt gtgctggtga
     1801 ctagactggc gggatgaaaa gcaaattatt tattccgggc tcacggcccg aactgttcgc
     1861 caaagcgctg gcgagccagg cagacgccct ttctttcgat ctcgaagacg ccgtgtcgga
     1921 ggcgcgcaag cctgaggccc gggcgtatct gcgtgatttc ctggtggatt ctctgcaccg
     1981 ttctaacgct gcttcttctc ctggagaacg gttcggcggc aagacgatca tcgtgcgtgt
     2041 gaatgccatc gattcacctc atttcgaagc cgatctcgcc gccgtcgtgc aggcgggtgt
     2101 caatctgatc aacttgccga aaccgcgcca tgccgacgac gtccgagcag ccgcgaacgc
     2161 gctcgacgtc gctgaacgcg ctaacggcgt gacggagccg attggcttgc tgttgaatat
     2221 cgaatcgccg ggcgcattgc ggcgcgcgtt tgaactggcc agcgcgcatc ctcgcgtgaa
     2281 aggcttgcag cttgggctgg gcgacctgtt tgagccgctg ggcatagcgc gacgggagac
     2341 tgctgcaatc cagcaggcca tgtttgcgtt gagcatggcg gcgggcgagg cgggcgtgtt
     2401 cgcctacgat tcggcgttcg ccgatatccg cgatcaagcc ggttaccagg ccgaagcgcg
     2461 actcgcgcgt agccttggtt ttatcggcaa gagttgcatt catccgagcc aggtcgcgct
     2521 cgccaatgaa gtgttccagc cgacagccga tgagatggcc cacgcgcacc gggtggttga
     2581 agcggcagcg gaagccgatg cggcaggccg gggcgcatat gtggtcgacg gcaagatgat
     2641 tgacgggcca ttcgtcgcgc gagctcgggc gatcgtggcg caggcggctt cgaat
//
LOCUS       DATGBK010001022         1933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127686, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001022 DATGBK010000000
VERSION     DATGBK010001022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127686"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1933)
                     /locus_tag="VKJ77_14250"
     CDS             complement(<1..>1933)
                     /locus_tag="VKJ77_14250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HMC46477.1"
                     /translation="GGEGVDWASHSMFTKTPHVFQNLGDGTYFHSGILAIRQAAAAKA
                     NITYKILYNDAVAMTGGQPVDGSISVPQIARQVEAEGIATLVVVSDEPEKYDGHHDQF
                     PKGTTFHHRRELDEVQRRLRDIKGVTVLIYDQTCAAEKRRRRKKGEFPDPDKRLFINE
                     AVCEGCGDCGVQSNCLSVEPVETELGRKRRIDQSSCNKDYSCVNGFCPSFVTLEGAKL
                     KKAGGNVFDPEALAAHVDALQEPKLALDNAPYDILITGVGGTGVVTVGALISMAAHLE
                     GKSASVLDFMGFAQKGGAVLSFVRFASTDALLNQVRIDTQQADVLLACDMVVGASADA
                     LQTVRHGRTRIVVNTHAIPNATFVQNPDANLHAGSLLEKMQHAAGAERMNRCDAQALA
                     TRFLGDTIGANILMLGYAWQLGLVPVSHAALMRAIELNNVAVPMNKLAFAIGRLAAAD
                     MDALESLRKAAVTPRVEMAAMPLDVLIADREARLQAYGGSSYVTRYRALVSAAAAHHN
                     DAVTRAVASTFYRLLAVKDEYEVARLHTDPAFRAALEAQFEGTAGQDFAVKFNMAPPV
                     LSKAKNGGQPRKMTFGQWLWPVLGVLSKVRGLRGTVIDPFGKSLERKMERELPGDYEI
                     TIRRALEVLTPDTAKDVETL"
BASE COUNT          373 a          629 c          533 g          398 t
ORIGIN      
        1 aagcgtttcc acatccttgg cggtatccgg cgtcagcact tcaagcgcgc gtcgaatggt
       61 tatttcgtag tctccaggaa gctctcgctc catcttccgc tcgagcgatt taccgaacgg
      121 atcgatgacc gtgcctcgca atccgcgaac cttcgacagc accccaagca ccggccagag
      181 ccattgcccg aacgtcattt tccgcggttg gccgccgttc ttcgccttcg ataaaaccgg
      241 cggagccata ttaaatttca ccgcgaaatc ctgacccgcc gtgccttcga actgcgcttc
      301 gagcgccgcc cggaatgcgg gatcggtgtg aagccgcgcg acttcgtatt catccttcac
      361 cgccagcagc cgatagaacg ttgaagccac cgcgcgcgtc acggcatcgt tgtgatgcgc
      421 cgccgccgct gaaaccaacg cccgatatcg cgtcacataa ctcgaaccgc cgtaagcctg
      481 caaccgtgct tcacgatctg cgatcaacac atccaacggc atcgcggcca tctcgacccg
      541 cggcgtaaca gcggctttgc gcagcgattc caacgcatcc atatccgccg ctgccagtcg
      601 gccgatagca aacgccagct tgttcatcgg cacagcgaca ttgttcaatt caatcgcacg
      661 catcaacgcc gcatgcgaca ccggcaccag tccaagctgc cacgcatagc ccaacatcaa
      721 aatattcgcg ccgatggtgt cgccgagaaa acgcgtcgcc aaagcttgcg cgtcgcacct
      781 gttcatgcgc tccgcgcccg ccgcgtgctg catcttttcc agcagcgatc cggcgtggag
      841 gttcgcgtcg gggttctgta caaacgttgc gttcggaatc gcgtgcgtgt tcacgacaat
      901 ccgcgtgcgc ccatgccgca ccgtttgcag cgcgtcagcg ctcgcgccga cgaccatgtc
      961 gcaggcgagc agcacgtcgg cttgctgggt atctatacgc acctggttca gcaacgcatc
     1021 ggtggaagcg aagcgcacga acgacagcac cgcgccacct ttctgcgcaa agcccatgaa
     1081 gtcgagtacg gacgcgctct tgccctccag atgcgcggcc atgctgatta acgcgccgac
     1141 cgtcaccaca cccgtgccgc cgacgccggt aatcaaaatg tcgtacggcg cgttatcgag
     1201 cgcgagcttg ggctcctgca acgcatcgac gtgtgccgcg agcgcttcgg gatcgaatac
     1261 attacctccg gctttcttga gctttgcgcc ttcgagcgtg acgaagctcg ggcagaaacc
     1321 gttcacgcac gagtagtctt tgttgcacga agactggtcg atgcggcgct tgcggccaag
     1381 ttctgtttcg accggttcca ccgataaaca attgctctgc acgccgcaat caccgcagcc
     1441 ttcgcacacg gcttcgttga tgaacaagcg tttgtccgga tcgggaaact cgcctttttt
     1501 gcggcgacgg cgtttctccg ccgcacaggt ttgatcgtag atgaggacgg taacgccctt
     1561 gatatcgcgt aaccgccgct ggacttcatc gagttcgcgc cgatgatgga acgtcgtgcc
     1621 tttcggaaac tggtcgtgat ggccgtcgta tttctcgggt tcatcgctga ctacgacgag
     1681 cgtggcaata ccttccgctt caacttgccg cgcgatttgc ggcacggaaa tgctgccatc
     1741 gacgggctgg ccgccggtca tcgcgacggc gtcgttgtag aggatcttgt aggtgatgtt
     1801 ggccttcgcc gcggccgcct ggcgaatagc gaggattcct gagtgaaagt aggtgccatc
     1861 gccgagattc tggaacacgt gcggcgtttt cgtgaacatg gagtgcgacg cccaatccac
     1921 gccttctccg ccc
//
LOCUS       DATGBK010001023         1539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127697, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001023 DATGBK010000000
VERSION     DATGBK010001023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127697"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VKJ77_14255"
     CDS             complement(<1..197)
                     /locus_tag="VKJ77_14255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HMC46478.1"
                     /translation="MARLLPDALTALAVDSLLAAGALPATAESTARALVYADVRGLSS
                     HGVSRLPMYCAQLRNGRVDPLA"
     gene            complement(335..637)
                     /locus_tag="VKJ77_14260"
     CDS             complement(335..637)
                     /locus_tag="VKJ77_14260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006461216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46479.1"
                     /translation="MRIYNHPVPEDFTLQRIFNALSDPVRLDIVRHLSHVTEATCGDL
                     DGGRPKSSMSHHFRILREAGLVQTCVVGTVHQNTLRRAELDSRFPGLMDAILNQTP"
     gene            725..>1539
                     /locus_tag="VKJ77_14265"
     CDS             725..>1539
                     /locus_tag="VKJ77_14265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010108506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HMC46480.1"
                     /translation="MPALFEPFKLKDISLRNRIAIPPMCQYSAVDGVINDWHRVHLAG
                     LARGGAGLVIVEATAVSPEGRITPGCTGIWNDEQAQAFVPVVASIKAAGAVPGIQIAH
                     AGRKASANRPWEGDDHIGEDDPRGWQTIAPSAIAFGANLPKVPKAMTLDDIARVRQDF
                     VAAAKRALDAGFEWLELHFAHGYLGQSFFSTHSNQRDDAYGGSLENRSRFMLETLAAV
                     REVWPEHLPLTARFGVIEYDGRDEETLAESIELAKNFKRGGLDMLSVSVGFSTP"
BASE COUNT          321 a          448 c          471 g          299 t
ORIGIN      
        1 gctaacggat caacgcggcc attcctgagt tgtgcgcaat acatcggcag acgcgatacc
       61 ccgtgcgacg acaacccgcg cacatcagca taaacaagcg cacgggctgt tgattccgcg
      121 gtcgcaggta atgcgcccgc agcaagcagc gagtcgacag caagcgcggt gagcgcgtcg
      181 ggaagcagtc gggccatcga tcattccttt taaattatag atttcaattg gcaagcgcgg
      241 ccgcgaccgg tgccgctatg agcgaacgca cgcgcatccg ccactccgat aaaagtgcgc
      301 gcggtcttcg ccggtcaagt gatcagcgaa gtcgtcacgg agtctggtta aggatcgcgt
      361 ccatgagtcc cggaaacctg ctgtcgagtt cggcacgtcg caacgtgttc tgatgaaccg
      421 tgccgaccac gcaggtctgg acgagacccg cctcgcgcaa aatgcggaag tgatgggaca
      481 tgcttgattt cgggcggccg ccgtcaaggt ctccgcaggt ggcttcggtg acatgcgaca
      541 aatgccgcac gatgtcgaga cgcaccgggt cgctcaaggc gttgaagatc ctctggaggg
      601 tgaagtcctc agggacggga tggttatata tgcgcataca gcagatggta ccggtttctg
      661 tgataatcga tagttcgatt tatatcgaac tatcgattta gcattaattc acggagcctg
      721 cccgatgccc gcattattcg aacccttcaa actcaaagac atctcgttgc gcaaccgcat
      781 cgcgatcccg ccgatgtgcc agtactccgc tgtcgacggc gtgatcaacg actggcatcg
      841 cgtgcatctg gctggtctcg cgcgcggtgg cgccgggctg gttatcgtcg aggcgacggc
      901 cgtatcgcct gaaggccgca ttacgccggg ttgcacaggc atctggaatg acgagcaggc
      961 gcaagcgttc gtacccgtcg ttgcatcgat caaggcagcc ggcgccgtgc caggaatcca
     1021 gattgctcac gcgggccgca aggccagcgc caaccggccg tgggaaggcg acgaccatat
     1081 cggcgaagac gatccgcgcg gatggcaaac catcgctccc tcggctatcg ccttcggggc
     1141 caacctgccc aaggtgccca aagcgatgac actcgacgat atcgcccgcg tccgccagga
     1201 ttttgttgct gctgcaaaac gagcactcga tgcgggtttt gaatggttgg agctgcactt
     1261 cgcccacggc tatctcggtc agagcttttt ctcgacgcac tccaatcaac gcgacgatgc
     1321 ctatggcggg agcctcgaaa accgcagccg cttcatgctg gagacgctgg ctgcagtgcg
     1381 cgaagtatgg cccgagcatc tgccgctgac ggctcgcttt ggcgtgatcg aatatgacgg
     1441 gcgcgatgag gagacgctcg cagagtcgat cgagctggcg aagaatttca agcgcggggg
     1501 attggatatg ctcagcgtta gcgtgggttt ctctacgcc
//
LOCUS       DATGBK010001024         1779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_150521, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001024 DATGBK010000000
VERSION     DATGBK010001024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150521"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..388
                     /locus_tag="VKJ77_14270"
     CDS             137..388
                     /locus_tag="VKJ77_14270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46481.1"
                     /translation="MPGYADAGHVPHALRRALNRQAVAQKSAPLYACTKPLLPRKWLD
                     VPGIREKKDKNGDKNGRGAKPLKASRRALIQQMVCIGEA"
     gene            complement(402..1034)
                     /locus_tag="VKJ77_14275"
     CDS             complement(402..1034)
                     /locus_tag="VKJ77_14275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009908400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC46482.1"
                     /translation="MNAQTDRFLIDGPVGKIEVALDRPADGAPTRGIALVAHPHPLYG
                     GTMDNKVAQTLARTLVQLGYVTYRSNFRGVGETQGEHDNGTGERDDLLAVVAHMRAQP
                     GQADVPLVLAGFSFGTFVMSHVAKHLRDSGEAIERMVFAGTAASNWQVAEVPDNTLVI
                     HGEVDDTVPISSVYDWARPQELPVVVIPGGEHFFHRKLHVLKKIIVDAWR"
     gene            complement(1046..1378)
                     /locus_tag="VKJ77_14280"
     CDS             complement(1046..1378)
                     /locus_tag="VKJ77_14280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HMC46483.1"
                     /translation="MDPFYKYHVFFCLNQRDPDAARPSCANCNAQAMQEYAKKRVKQL
                     GLAGDGKVRINKAGCLERCELGPVVVVYPEGTWYTYVDEADIDEIVDSHLVNGKIVER
                     LLIDQPVA"
     gene            complement(1434..>1779)
                     /locus_tag="VKJ77_14285"
     CDS             complement(1434..>1779)
                     /locus_tag="VKJ77_14285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="teicoplanin resistance protein VanZ"
                     /protein_id="HMC46484.1"
                     /translation="SGLTFNWATDGAIAGIACGTLAGLLSLRCSRAWRATLAGVALIA
                     ALVLVNLLPVNPYFDIVLADWRQGRYLHFNGLSQWLAWVWPYAALGWLASTAERAFLA
                     RRRDGGEKRRSL"
BASE COUNT          378 a          573 c          514 g          314 t
ORIGIN      
        1 aagcgcgcaa cactgcaaaa acccaagaca aacccggcaa agagcctggc tgaatcttga
       61 tccgccggcg cggcgtaaaa cgctcgctgg actgacctcc gcgcgcttcg atactcgggc
      121 ggcgcatggg cttggcgtgc ccggttatgc agatgccgga cacgtgccgc atgcgctacg
      181 gcgagcgctg aaccgacaag cggtcgcgca aaagtctgcg ccattatacg cgtgcaccaa
      241 accgctttta ccgcgaaagt ggctggatgt gccggggatt cgtgaaaaga aggataaaaa
      301 cggggataaa aatggccgcg gcgcaaagcc tttgaaagcc tcgcgccgtg cgttgattca
      361 acagatggtt tgtatcggtg aagcgtaaag ccgaggtgaa ctcaacgcca tgcgtcgacg
      421 ataatcttct tcagcacatg cagcttgcga tgaaagaaat gctcgccccc gggaatcacc
      481 accacgggca attcctgcgg ccgcgcccaa tcgtacacgg agctgatagg cacggtatcg
      541 tccacttcac cgtgaatcac aagcgtgttg tccggcacct cggccacctg ccaattactc
      601 gccgccgtcc ccgcgaacac catccgctca atggcctcgc ccgaatcgcg caagtgcttc
      661 gccacatgcg acatcacaaa ggtgccgaac gagaaaccgg cgagcaccag agggacatcg
      721 gcctggcccg gctgcgcgcg catatgagcg accacggcca gcagatcgtc gcgttcaccc
      781 gtgccgttgt cgtgctcgcc ttgcgtttca cccacgcccc gaaaattcga gcgatacgtg
      841 acgtacccca gctgcacgag cgtgcgcgcg agggtctgcg cgaccttgtt gtccatcgtc
      901 ccgccgtaca gcgggtgcgg gtgagcaacc agcgcaatgc ctcgcgtggg cgctccgtca
      961 gcgggacgat ccagcgcgac ttcaatcttg cccaccggcc cgtcgatcag aaacctgtcg
     1021 gtctgtgcgt tcattgcgta agccctcagg ccacaggctg atcgatcagc aaacgctcga
     1081 cgatcttgcc gttcacgaga tgcgaatcaa caatttcatc gatatccgct tcatccacat
     1141 acgtgtacca ggtcccttcg ggatacacga ccaccaccgg tcccagttcg cagcgctcga
     1201 ggcagccggc cttgttgatg cggaccttgc cgtcgcccgc gagcccgagc tgttttacgc
     1261 gcttcttcgc gtactcctgc atggcctggg cattgcaatt cgcgcaactc gggcgcgcgg
     1321 cgtcggggtc gcgctggttg aggcagaaga acacgtgata tttgtagaac gggtccatga
     1381 gcttggccgg aagatgtttg atgtcgtggg atttttgtgt tgctttcagc cgattataac
     1441 gaccggcgct tttcgccgcc gtcacgccgc ctggccagaa atgcgcgctc cgcagtcgat
     1501 gccagccagc caagcgcggc atacggccac acccacgcaa gccactgcga aaggccgttg
     1561 aaatgcagat agcgcccctg gcgccagtcg gccagcacga tatcgaagta gggattgacc
     1621 ggcagaagat tcaccaacac cagcgccgcg ataagcgcaa caccagccag cgtcgcgcgc
     1681 cacgcccgtg agcatcgcag ggaaagcaga cccgccagcg ttccgcacgc tatgccggca
     1741 atggcgccgt cggtagccca gttaaacgtg agcccggag
//
LOCUS       DATGBK010001025         3603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_220718, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001025 DATGBK010000000
VERSION     DATGBK010001025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220718"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..431
                     /locus_tag="VKJ77_14290"
     CDS             129..431
                     /locus_tag="VKJ77_14290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006461216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46485.1"
                     /translation="MRIYNHPDPEGFTLTRLFNALSDPVRLDIVRHLSRVTEATCGEL
                     DGGRPKSSMSHHFRILREAGLVQTRVAGTVHQNTLRRAELDSRFPGLMNAILNQTP"
     gene            595..1590
                     /locus_tag="VKJ77_14295"
     CDS             595..1590
                     /locus_tag="VKJ77_14295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011872697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ldh family oxidoreductase"
                     /protein_id="HMC46486.1"
                     /translation="MARLLPDALTALAVDALLAAGALPTTAQSTARALVYADLRGLSS
                     HGVSRLPMYCAQLRNGRVDPLAQPVIVSDRGAAVLVDGADGLAYPACDLAISALTERA
                     RQFGSAVAGVRRSHHFGVGAAHLQALGAAGMVGLAFSNSPAAMPAWGGRRALFGTNPI
                     AAVFPRRHAEPLVIDLAHSQIARGKVAIAARDGKPIPEGWATTRDGHPTTDARAALDG
                     MMLPFGGAKGAMLALVVELLAAALTGANFGYEAGSFLTEEGERSRIGHLFWAIDPGAL
                     AGDDTYLSRVETLIEMMLMDDDVRLPGYRRERLAETSEQEGVDVPDTLIAQLKAS"
     gene            1718..>3603
                     /locus_tag="VKJ77_14300"
     CDS             1718..>3603
                     /locus_tag="VKJ77_14300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HMC46487.1"
                     /translation="MEHHARKQDERLEIKTTTCYMCACRCGIRVHLREGEVRYIDGNP
                     EHPLNQGVICAKGASGIMKQYSPARLTQPLMRRADAERGSAQFEPVSWEVAFDILEKR
                     LAGIRATDPKKFALFTGRDQMQALTGLFAKQFGTPNYAAHGGFCSANMAAGMIYTIGG
                     SFWEFGGPDLDSAKLFFMIGTAEDHHSNPLKIAISKFKRAGGRFIAINPIRTGYAAIA
                     DEWVPIKPGTDGALFMAFLHELIAADAWDHEFVQRYTNAADLVDLNEGSENFGLFVSH
                     PDTPAGNPMFPQNHAWWDAEAARAVPHHSPGVTPALDGRYTLADGTPVAPSFTLLRER
                     VADCTPDWAADITGIPADTIRRLAQEMIQTSRDHRITLPIHWTDAWGETHETVTGNPV
                     AFHAMRGLAAHSNGFQSIRALAVLMSLLGTIDRPGGFRHKSPFPRAVPPSAKPPNSPD
                     AVKPNTPLASGPLGWPAAPEDLFIDENGGPVRIDKAFSWEYPLAVHGVMHSVITNAWR
                     GDPYPIDTLMIFMANMAWNSSMNTTKVREMLVDKHANGDYKIPFLVVCDAFQSEMTAF
                     ADLILPDTTYLERHDAMSMLDRPISEFDGPADSVRVPVVPPSGQCKPFQEVLIELASR
                     LKFPA"
BASE COUNT          669 a         1124 c         1100 g          710 t
ORIGIN      
        1 cgagatgtct ttgagtttga agggttcaaa taatgcgggc atcagacagg ctccgtggaa
       61 tgatctagtt cgatagttcg atataattcg aactatcgat tatcacagaa accagtacca
      121 tctgctgtat gcgcatatat aaccatcctg accctgaggg ctttaccctc acgcggctct
      181 tcaacgcttt gagcgacccg gtgcgtctcg acatcgtgcg gcatttgtcg cgtgtcacgg
      241 aggccacctg cggcgagctc gacggcggcc gcccgaaatc aagcatgtcc caccacttcc
      301 gcatcttgcg cgaggcgggt ctcgtccaga cccgcgtggc cggcacggtt catcagaaca
      361 cgttgcgacg ggctgaactc gacagcaggt tcccgggact catgaacgcc atcctcaacc
      421 agactccctg acgacgtcgc tgatcacttc gccgcggcaa ccaaccgcgc gcacttttag
      481 caaagtagcg gacgtgcgta cctaacgtca cgtcgaaccc gtgactccgc tcgtagcggt
      541 acgaatcgcg gccgcacttg cagattgaaa tttataactt gaaaggaatg atcgatggcc
      601 cgactgcttc ccgacgcgct cacagcgctt gctgttgacg cgctgcttgc cgccggcgca
      661 ttgcccacga ccgcgcaatc tacagcccgt gcgctcgttt atgcggacct gcgcgggttg
      721 tcgtcgcatg gggtatcgcg tctgccgatg tattgcgcgc aactcaggaa cggccgcgtt
      781 gatccgttgg cgcaaccggt catcgtctcg gatcgcggtg cggctgtgct ggtcgacggc
      841 gcggatggac tcgcttatcc cgcctgcgat ctcgcaatca gcgcgctgac tgaacgcgcg
      901 cggcagttcg gcagcgcagt cgcgggcgtc aggcgcagcc atcatttcgg cgttggcgcc
      961 gcgcatttgc aggcgcttgg cgcggcaggc atggtcgggc tcgcgttcag caactcgcct
     1021 gcggccatgc ccgcgtgggg cggtcggcgg gcgctgttcg gcaccaatcc cattgctgcc
     1081 gtctttccgc gccgtcacgc ggaaccgctg gtgatcgacc tggcccactc gcagattgcg
     1141 cgcggcaagg ttgccattgc cgcccgtgat ggcaagccaa ttcctgaagg ctgggcgacc
     1201 actcgcgacg gccacccgac gaccgatgcc cgtgctgccc tcgacggcat gatgctgccg
     1261 ttcggcgggg cgaagggtgc gatgctggcg ttggttgtcg agttgctggc ggcggcgctg
     1321 actggcgcga acttcggtta tgaagccggt tcgttcctga cggaggaggg cgagcgttcg
     1381 cgcatcggtc atttgttctg ggcaatcgat ccgggcgcac tggccggtga cgacacctat
     1441 ctctcacgag tcgaaacgct gattgaaatg atgctcatgg acgacgatgt ccggcttcct
     1501 ggttaccgga gagaacgtct tgccgaaacg tcggaacagg aaggggttga tgttcccgac
     1561 acgttgatcg cgcaattgaa ggcaagttga aaccatcggc gtagcggata gttcctctcg
     1621 taaatcgcga tttcccttgg cgacctgcgg cgattaggat ggtcaggatc ggatcggtac
     1681 cgctccgaca taccgagagc cgcgagggag gcccagcatg gaacatcacg cccgcaagca
     1741 ggacgagcgg cttgagatca agacgaccac ctgctacatg tgtgcttgtc gctgtggcat
     1801 tcgcgtgcat ttgcgcgaag gcgaagtgcg ttacatcgat ggcaacccgg agcacccgct
     1861 caaccagggc gtgatctgcg cgaagggcgc gtccggcatc atgaagcaat attcgcccgc
     1921 tcgcctcacg cagccattga tgcgcagggc ggacgccgag cgtggcagcg cgcagttcga
     1981 accggtgtcg tgggaagtcg ccttcgatat cctcgaaaag cgccttgccg gaattcgcgc
     2041 tacagaccca aagaaattcg cgctctttac cggccgcgat cagatgcagg cgctgacagg
     2101 gctcttcgcc aaacagttcg gtacgcctaa ctatgcggct cacggcggtt tttgttcggc
     2161 gaacatggcg gccggcatga tctacacgat cggcggatcg ttctgggaat tcggcggtcc
     2221 cgatctcgac agcgccaagc tgttcttcat gatcggcacg gcggaagatc atcattcgaa
     2281 tccgctgaag atcgccatct cgaagttcaa gcgtgcgggc ggacgcttta tcgcgatcaa
     2341 tcccatacgc accggttacg ccgccattgc cgacgaatgg gtgccgatca aacccggcac
     2401 cgacggcgcg ctgttcatgg cgtttctcca cgagttgatt gcagccgacg cctgggacca
     2461 cgagttcgtg cagcgctata cgaacgctgc cgacctcgtc gatctcaacg aagggagcga
     2521 gaacttcggc ctgttcgtca gtcatccgga cacacccgcg ggcaatccga tgtttccgca
     2581 aaatcatgca tggtgggatg ccgaagcagc gcgcgccgtg ccgcatcatt cacccggcgt
     2641 gacgcccgcg ctcgatggcc gctatacgct cgcggacggc acgcccgttg caccgtcgtt
     2701 cacgctgctg cgtgagcgcg tggcggattg cacgcccgat tgggccgctg atattacggg
     2761 cattcccgct gacaccatcc gccgtctcgc gcaggagatg atccagacga gccgcgatca
     2821 ccggatcacg ctgcccattc actggaccga tgcgtggggc gagacccacg aaactgtcac
     2881 cggcaacccc gtcgcgtttc acgccatgcg cgggcttgct gcacattcca acggcttcca
     2941 gtcgatccgt gcgctcgcgg tgctgatgtc gctgctgggc accatcgacc ggcccggcgg
     3001 ttttcgacat aaatcgccgt ttccgcgtgc cgtgccgcca tcggcgaaac cgccgaacag
     3061 ccccgacgcc gtcaagccga acacgccgct tgcaagcggg ccgctgggct ggcccgcagc
     3121 gcctgaagat cttttcatcg atgaaaacgg cggccccgtt cgcattgata aagcgttctc
     3181 gtgggaatat ccgctggccg tgcatggtgt gatgcatagc gtgatcacca acgcgtggcg
     3241 aggggacccg tacccgatcg acaccctcat gatcttcatg gccaacatgg catggaactc
     3301 gtcgatgaat acgacgaagg tgcgggagat gctcgtcgac aaacatgcga acggtgacta
     3361 caagattccg tttctcgtgg tgtgcgacgc gttccagtcg gagatgacgg cgttcgccga
     3421 cctcatcctg ccggacacga cttaccttga gcgccacgac gcgatgtcga tgctcgatcg
     3481 cccgatctcc gaattcgacg gtccggccga ttccgtacgc gtgccggtcg tgccgccttc
     3541 ggggcagtgc aagccgttcc aggaagtgct gatcgaactg gcgtcgcggc tgaagtttcc
     3601 ggc
//
LOCUS       DATGBK010001026         2646 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_81647, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001026 DATGBK010000000
VERSION     DATGBK010001026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81647"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            516..1193
                     /gene="rsmD"
                     /locus_tag="VKJ77_14305"
     CDS             516..1193
                     /gene="rsmD"
                     /locus_tag="VKJ77_14305"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HMC46488.1"
                     /translation="MSRSSITRALERNPERSAERTAERAPKVREAAPSRGGKPHTIRI
                     IGGDWKRTPLPVLSLDGLRPTPDRVRETLFNWLGQSLDGKRCLDLFAGSGALGFEAAS
                     RGALRVLMVERSGRAVAQLKANQTRLAAKNIEIVEADALRLAAGLAPNSFDVVFLDPP
                     FGDTAMLQRAIELAVPLVSPGGALYIESGEPVDPAQTPALSGWAITREGKAGAVRYHL
                     LRRENEE"
     gene            1383..1886
                     /gene="coaD"
                     /locus_tag="VKJ77_14310"
     CDS             1383..1886
                     /gene="coaD"
                     /locus_tag="VKJ77_14310"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HMC46489.1"
                     /translation="MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRNKKPF
                     FSLAERLDIAHDVLGHYPNVQVMSFKGLLKDFVRKNNARVIVRGLRAVSDFEYEFQMA
                     GMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVEKRLQDKVGPI
                     AQDPTVP"
     gene            1987..2244
                     /locus_tag="VKJ77_14315"
     CDS             1987..2244
                     /locus_tag="VKJ77_14315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HMC46490.1"
                     /translation="MALFITDECINCDVCEPECPNDAISMGVDIYVIDPNKCTECVGH
                     YDEPQCQQVCPVDCIPRDPAHEENAIQLMAKYHVLMKAKGA"
     gene            complement(2296..>2646)
                     /locus_tag="VKJ77_14320"
     CDS             complement(2296..>2646)
                     /locus_tag="VKJ77_14320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012212697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC46491.1"
                     /translation="KDSFNSYPLDRLAQAAAIAAVEDDDWFRETCAKVIASRERLTAD
                     LQALGFDVVPSAANFVFACHPEHDAATLAARLKEKEIFVRHFKLPRIDQHLRITVGTD
                     ADCDALLAALRALL"
BASE COUNT          533 a          792 c          821 g          500 t
ORIGIN      
        1 ccggctgcgc cggcgtcacc ggcgtagtcg cgtgccgaag cccttcagcg tcctcggaac
       61 gcgcctcggc aacgtcctcg gcttcgtttt cctcgggcgt atcgctatcg gtgtcggtcg
      121 atttgcctat taatcgtttg aaaaagctga acatggtctg cagtggtggg ggtggcgcgt
      181 tctatcgatg ccgtcgcaac tgcgttcctg cgtcgaacga gcgcagaacg caaacaatgc
      241 gcaaacgcaa aggtggcgat ggctgccgtg ccgcgaaaga ccgccggaaa cagcgtgaag
      301 agccgggcgt gtgcgcaaaa aaagcgaaag aggcttattt tatcagccgg caccgattgt
      361 agtgcccggc ccgacggcga acccctgcat cggtcgcgac ggggctgtgg taacgtgccc
      421 gcatcggcga caagcgaatt gttgcaaacc gatcacgttc tcaaccgacc cgcgcgggtc
      481 atcccgccgc ctctactcaa gcgccacgca cgtccatgtc ccgttcctcg atcacccgcg
      541 cattagagcg aaatcccgaa cgcagcgccg agcggaccgc cgaacgcgct ccgaaagtcc
      601 gcgaagctgc gccatcgcgc ggcggcaagc cgcataccat ccgcatcatt ggcggcgact
      661 ggaaacgcac gccgctgccc gttctgagcc tggacggcct gcgtccgacg cccgaccggg
      721 tccgtgagac gctgttcaac tggctgggcc aatcgctcga cggcaagcgt tgcctcgatc
      781 tcttcgccgg cagtggcgcg ttgggcttcg aagcggcgtc gcgcggcgcg ctacgcgtgc
      841 tcatggtgga acgcagcggc cgcgcagtcg cgcaactgaa ggcgaaccag acgcgcctgg
      901 ccgcgaaaaa catcgaaatc gtggaagcgg atgcgctgcg tcttgccgcg ggcctcgcgc
      961 caaattcctt cgatgtcgtg ttcctcgatc cccctttcgg cgataccgcc atgctccagc
     1021 gcgccattga actggccgtg ccgctagtgt cgccgggcgg cgcgctgtac atcgaatcgg
     1081 gtgaacccgt cgatcctgca caaacgccgg cgttgtcggg atgggcgatt acccgcgaag
     1141 gcaaggctgg cgcggtccgc tatcatttgc tgcggcgcga aaatgaggaa taatgcgcgt
     1201 tcccgaatgc ctgccgggca atgcgcggcc gactgtggac ggggcttgat gcacgtggtg
     1261 gacgtagcgg gcttagcagg cgacggggta tcggaggaat tttctggtct tgtcgatgcc
     1321 ggcagcggcc caatctgtag cgaaagacat accagaagaa gtatcagaag aggagatgcc
     1381 ccatggttgt agccgtttat cccggaacgt tcgacccgct cacgcgcggt cacgaagacc
     1441 tcgtgcgacg tgcatcgagt attttcgata ccttggtcgt cggagtggcg gatagccgca
     1501 acaagaagcc gttcttcagt ttggcggaac ggctggatat agcacacgat gtgctgggtc
     1561 attatccgaa cgtgcaggtg atgagcttca aggggctact gaaggatttc gtgcgcaaga
     1621 acaatgcgcg tgtgatcgtg aggggcctgc gagccgtctc cgacttcgaa tacgaattcc
     1681 agatggcggg catgaaccgt tacctgctac cggacgtcga aacgatgttc atgacgccat
     1741 cggatcaata tcaattcatt tcgggcacga tcgtgcgcga gatcgcgcaa ctcggcggcg
     1801 atgtcagcaa gtttgttttc ccctcggtgg aaaagcgctt gcaggacaag gttggtccga
     1861 ttgcgcaaga tccaacggtg ccgtgagcgt ttcaggcgtt cacttatgtg ctcactaacg
     1921 cgcgctcatc cagagcgcgc tggcgccgaa aaagccggct gagatgccgg gcgaagagag
     1981 taaagcatgg ccctgtttat taccgatgag tgcatcaact gcgacgtgtg cgagcccgag
     2041 tgcccgaacg acgccatctc gatgggtgtc gatatttacg tgatcgaccc gaacaagtgc
     2101 accgaatgcg tcggccacta cgatgaaccg caatgccagc aagtgtgccc ggtggattgc
     2161 atccctcgcg acccggcgca tgaggaaaac gccatccagt tgatggcgaa gtatcacgtg
     2221 ttgatgaaag ccaagggcgc ttgatttaac gtcgagcgtc aggttaagcc tcaagcgcct
     2281 tttgcgcgcg tgccctcaga gcagcgcacg cagcgctgcc agcagagcgt cgcagtcggc
     2341 atcggtgccg acagtaatcc gcaaatgctg atcgattcgc ggcagcttga aatgccgcac
     2401 gaaaatctcc ttctccttca aacgcgcggc cagcgtggcg gcgtcgtgtt ccggatggca
     2461 cgcgaatacg aagttcgcag ccgacggcac tacatcgaag cccaacgcct gcaagtcggc
     2521 cgtcagccgc tcccgactag cgatcacctt cgcgcaggtt tcgcgaaacc agtcgtcgtc
     2581 ttcaacggcc gcgatcgctg cggcttgcgc cagccggtcg agcggatagg aattgaagct
     2641 gtcctt
//
LOCUS       DATGBK010001027         1751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_104669, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001027 DATGBK010000000
VERSION     DATGBK010001027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104669"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1033)
                     /locus_tag="VKJ77_14325"
     CDS             complement(<1..1033)
                     /locus_tag="VKJ77_14325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017335424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC46492.1"
                     /translation="MLKPIGRLFVAALLAGSISAYAADGLPNAPAPFNKGGVRIALVN
                     YLSTGDFFQAYEAGAQKQAKALGIDLRIYEGRQDAAQQRDQIQQAINLGVSAIIVNHG
                     LPESLKDVVQVALDKGIKVVAFDVDLGNPKVPQIEQSDHDLATLLLDQAVKDNGDAFA
                     AAYVYVPGFAPLDRRDAVWKAFKTAHPKVREEARFGTVDNPIAQSVANQAAAAYRAHP
                     DVRVVFAPYDEFARGAKLAADEAGIASKVRIYSADISTADIEAIRAPGSSWVATAATN
                     PAVVGEVSVRAAALLVAGQDPGHRIAIKPALITRDDLVKNDIHTIADLESRFVDFIRA
                     DVAKAGWIPE"
     gene            complement(1151..>1751)
                     /locus_tag="VKJ77_14330"
     CDS             complement(1151..>1751)
                     /locus_tag="VKJ77_14330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004527954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC46493.1"
                     /translation="TTASGTVIADQVRVAASHVFPAFRVSDQPTLNGPISQIIQAAID
                     AGIGRAAVEDTLKFVRERSRPWIDSGVERASDDPLLVREVGHLHIQLHAAEALLERAA
                     RTLDTIATQGHAPSEDDIARASVAVGEAKVLTTEIALLASEKLFELAGTQSTLAAHNL
                     DRHWRNARTHTLHDPVRWKYHLVGNYYLNGIKPARHPWN"
BASE COUNT          358 a          557 c          481 g          355 t
ORIGIN      
        1 cctctgggat ccagcctgcc ttggccacat ctgcccgtat gaaatccaca aaccgcgact
       61 caagatccgc aatcgtgtgg atatcattct tgaccaggtc gtcgcgcgtg atcaacgcag
      121 gttttattgc gatcctgtgc cccgggtcct ggcctgccac cagcagcgcc gccgctcgca
      181 ccgacacttc tcccactacg gcaggattag tcgcggcagt ggcgacccac gaactcccgg
      241 gcgcccggat cgcctctata tcggccgtcg atatatcggc gctataaatc cggaccttcg
      301 aagcaatgcc cgcctcgtcc gcagccagct tcgcaccacg agcgaactca tcatagggcg
      361 cgaacaccac acgtacatcc ggatgcgccc gataagccgc cgcagcctgg ttggccaccg
      421 actgcgcaat cggattgtcg accgtgccga accgcgcctc ttccctgacc ttcggatgcg
      481 cagtcttgaa cgccttccag accgcgtcac gccggtcaag cggagcaaag cccggcacat
      541 agacatatgc ggcggcaaac gcatcgccgt tatctttcac tgcctgatcg agcaacaatg
      601 tcgcgagatc gtggtcactc tgctcgatct gcggcacctt cggattgccg aggtcaacgt
      661 caaatgccac tactttgatg cctttatcga gcgccacctg caccacgtcc ttcaaggact
      721 ccggcaaacc atgattcacg ataatcgccg aaacgcccag attgatcgct tgctgaatct
      781 gatcacgttg ctgggcggca tcctgacggc cctcgtaaat acgcaaatca atgccaagcg
      841 ccttggcctg cttttgcgca cccgcctcgt aagcctggaa gaaatcgccg gtcgaaaggt
      901 agttgaccaa cgcgatcctg acgccgcctt tattgaaagg cgcgggagca ttgggtaagc
      961 cgtctgctgc ataggcggag atgctgccgg caagcaatgc ggcgacgaac aaacggccga
     1021 taggtttaag catgaaggat agtttccgtt tccgtggagt gagagcatgg ggacaacgtt
     1081 cgactgaaag cgcgcaaccg tacgacttgg ctgactatgc gcaaccgtcc tgtttattta
     1141 caacccggtt tcagttccac gggtggcgcg ccggcttgat gccattcaag taatagttgc
     1201 ccacaaggtg atatttccag cgcacggggt cgtgcagcgt atgcgtgcgc gcattgcgcc
     1261 agtggcgatc gaggttgtgc gcggcaagcg tcgactgcgt accggccagt tcgaacagct
     1321 tttcacttgc gagcaatgcg atctctgtgg tcaatacctt tgcttcgcca accgccaccg
     1381 atgcacgggc gatatcgtct tcgcttgggg catgtccttg cgttgcaatg gtgtccagcg
     1441 tccgcgcggc gcgttcgagc aacgcctcgg ccgcgtgcaa ctgaatgtga agatgaccca
     1501 cctcacgcac cagaagcgga tcgtcgcttg cacgctccac accgctatcg atccacggtc
     1561 gcgagcgctc gcgtacgaat ttcagcgtgt cttccacagc cgcccgcccg atacccgcat
     1621 cgatagctgc ctggatgatc tgggaaatcg gaccattgag cgtcggctgg tccgatacgc
     1681 gaaacgccgg aaatacgtgg gatgccgcga cccgcacctg atccgcgata accgtgccgc
     1741 ttgcagtggt g
//
LOCUS       DATGBK010001028         2361 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_36015, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001028 DATGBK010000000
VERSION     DATGBK010001028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2361
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36015"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            236..1042
                     /locus_tag="VKJ77_14335"
     CDS             236..1042
                     /locus_tag="VKJ77_14335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HMC46494.1"
                     /translation="MQRTRREAVDGLLPDERAKLILARLRTHGRVLAAELALEFNTSE
                     HTVRRHLRDLADAGHCKRVYGGALLISPAAPAGSTRLREAADRKAQLAVAAASIVRPR
                     QIILLDAGSTNVAIAAALPDNAGLTVVTNSPDACSRLLDRPGFDVILIGGRMSARGAG
                     SLGSTALLQVQQIKADLCFLGACAIDPDEGVAAFEAEEAELKRAMVKSSGQVAIAMTS
                     EKLMTAAPFFVVATSGIEHLIVEADVSAQRLGEFEKICGNVIVAHAGAQS"
     gene            1039..2190
                     /locus_tag="VKJ77_14340"
     CDS             1039..2190
                     /locus_tag="VKJ77_14340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46495.1"
                     /translation="MKPVAERIATTAVFLANGLGIGAWAVEVPRIKEALSLSNASLGI
                     ALFCFALGAIVAMPLAGRFAPRFGSGRVTAFLAVAFVAALPLPALVPDFALLCVVLFT
                     LGAANGALDVSMNGHASAIEGEWHAPIMSSFHAAWSMGGLLGAAGGAALQANGIGTLG
                     GLLLPDVVIGAVMLTSAVLALRDIGPRVLASASGFTLPSAGVMKLAALAFLCMLVEGA
                     VADWSAVFLRSALDTQASAAALGYSSFAFAMAACRVVGDVSVRRLGASVVVASGGLIA
                     ALGLALVLGYPNVVTACVGFALVGIGLANIVPVIFSAAGRSTTTPAVGVSMAATAGYA
                     GFLVGPPLIGLGAGFVGLRLALCALLLAALIVCLVGGKAVSRAGAEQAF"
BASE COUNT          396 a          686 c          767 g          512 t
ORIGIN      
        1 accttcacca tttgcgacgg caggtccgga taacgtgcag aagtggatcc gaaataagcc
       61 aatcacatga tgcctcccta aactgccagt ctgttgaagc gcagtacgga cgaggctgtc
      121 agcaacgaaa tacggacatc acaaaaattt gcctgccatc gctcgattac gatatattat
      181 gctcaattat gctcgattta cactgaacga ataaatccag acagagaccg acgacatgca
      241 aagaacccgg cgtgaggcag tagacgggct gctgcccgac gaacgcgcaa agctgatact
      301 cgccaggcta cgaacgcacg gccgcgtgct ggcggccgaa ctcgcgctcg aattcaacac
      361 ctccgagcac acggttcgcc gccatctgcg cgatctggca gatgcgggtc attgcaagcg
      421 tgtgtacggc ggtgcgctgc tgatctcgcc cgctgcaccg gccgggtcca cccgcctgcg
      481 cgaagcagcg gaccgaaagg cccaactggc cgttgcggcg gcgtccatcg tccggccgcg
      541 gcagatcatc ctgctcgatg ccgggtcgac caacgtcgct atcgcggcgg cgcttccgga
      601 caacgcgggt cttacagtcg tgacgaattc ccccgatgcc tgttcgcgtt tgctcgaccg
      661 ccctggcttc gatgtcatcc tgattggcgg ccggatgagc gcgcgtggag cggggtcgct
      721 cgggtccact gccctgttgc aggtccagca gatcaaggcc gatctgtgtt tcctcggcgc
      781 ttgtgccatc gacccggacg agggtgtggc tgcgttcgag gcggaggaag ccgagcttaa
      841 acgcgcgatg gtcaaatcga gcggtcaggt cgccatcgca atgacgtccg agaagctgat
      901 gaccgcggcg cccttttttg tagtggcgac ctccggcatc gagcatctga tcgtggaggc
      961 ggatgtctcc gcgcaacggc taggcgagtt cgaaaaaatc tgcggcaacg tgatcgtggc
     1021 tcacgcgggg gctcaatcat gaaacctgtc gctgaacgta tcgccaccac ggcagtgttt
     1081 ctcgctaacg ggctgggcat tggcgcgtgg gccgtcgaag tcccgcgaat caaggaagct
     1141 ttgtcgctaa gcaatgcatc gctcgggatc gcgctgttct gttttgcgtt gggcgcgatt
     1201 gtcgccatgc cgcttgcggg tcgcttcgcg ccgcgcttcg gaagcggccg cgtcaccgct
     1261 ttcctggccg ttgcatttgt tgccgcactg cctttacccg cgctggtccc ggactttgct
     1321 ttgttatgcg tcgtgctctt tacgttaggc gccgcgaacg gcgcactcga tgtatcgatg
     1381 aacggacatg ccagcgcgat cgaaggcgaa tggcacgcgc cgatcatgtc gtcgtttcat
     1441 gcggcctgga gcatgggcgg tctgttggga gcggcggggg gcgcggcgct tcaggccaac
     1501 ggtatcggca cgttgggagg attgctgctg ccggacgtcg ttatcggcgc ggtgatgctg
     1561 accagcgcgg tacttgcgct gcgggatatc ggaccgagag tactggcgag cgctagcggt
     1621 tttacattgc ctagcgcggg cgtcatgaaa ctcgccgccc tcgcctttct ctgcatgctg
     1681 gtcgaaggcg cggtggcgga ctggagcgca gtgttcctgc gctccgcact cgacacgcaa
     1741 gcaagcgcag cggcgctcgg ctattcatcg tttgccttcg cgatggcggc ctgccgcgtg
     1801 gtcggcgatg tatcggttcg acgcttaggc gcgagcgtcg tggtcgctag cggagggctt
     1861 attgcagccc ttggattagc gctggtgctg ggttatccaa acgtggtcac cgcttgcgtg
     1921 gggtttgcgc ttgtgggtat cggcctggct aacatcgtgc ctgtgatctt cagcgctgca
     1981 ggccgttcga cgacaacgcc ggccgtcggc gtttccatgg ccgccacggc aggttatgcc
     2041 ggcttcctgg tgggaccgcc cttgattggg ctgggcgcag gtttcgtggg tttgcggctc
     2101 gcgttatgtg cgcttttgct agccgccttg atcgtctgtc tggtgggcgg caaggccgtg
     2161 agccgggcag gtgccgaaca ggcgttttaa acgctacgac gttctttcgt ggttggtttt
     2221 cgcttagctc cgtttcacgg atttaagatt ttgttgggag gggttggcgg cgcgatgcgg
     2281 gaatgccgtc aaccattacg ccttaagaga atcactgcgg aatcaccgcg gcgccggcat
     2341 taaatccccg tcagcttgac g
//
LOCUS       DATGBK010001029         2183 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290164, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001029 DATGBK010000000
VERSION     DATGBK010001029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290164"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VKJ77_14345"
     CDS             complement(<1..245)
                     /locus_tag="VKJ77_14345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011549499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC46496.1"
                     /translation="MHVLTVEDDPAAADEIINELREHGLTVDWVDNGPEGMMRAMSGQ
                     YAAITLDRMLPGVDGLTILKAIRALGLQTPVLMLSALG"
     gene            complement(251..1150)
                     /locus_tag="VKJ77_14350"
     CDS             complement(251..1150)
                     /locus_tag="VKJ77_14350"
                     /inference="COORDINATES: protein motif:HMM:NF024905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HMC46497.1"
                     /translation="MTVSTAIAVDRSRLAPLAVIAHGIAIGAGFMVLMASLASPPLFV
                     GTTALLAMGSILVIARGSELRSLGSFTFIPVLYLACESAEGVRQAALIHRGFETLPFI
                     WAAFLPVLLIASIDHYRQHRPEVSCVSHFTKWSTRADIGDRVPYVEAMIAVTLAVGVA
                     AALVEWRHIEHGQWMIWSAASVVTGSAASARLKFRHRITGATVGVPAGILAGLLVPHD
                     AFSRDLIVLAALLTLVCIRPYVLAFGTRCGCAAMAFVVAGQPWTFASERLINVVLGSA
                     IGLLFTLAVHVVARRVKLEGVAS"
     gene            complement(1369..1950)
                     /locus_tag="VKJ77_14355"
     CDS             complement(1369..1950)
                     /locus_tag="VKJ77_14355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003269808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HMC46498.1"
                     /translation="MLQKLDPQTTALVLIDLQQGILGFAKAPRPAESVLTASAKLAKR
                     FREIGAPVVLVRVGWSHDFGDALKQPVDQPVTLPAGGLPSTWWDFPETLEVDEGDLKI
                     TKRQWNAFHGTELDLQLRRRGITTIVLGGISTNIGVESTARAGHELGYTLVLVEDAMS
                     CAALEHHQASVDYIFPRLGLVRQSEDVIQALAD"
BASE COUNT          488 a          658 c          652 g          385 t
ORIGIN      
        1 ccaagtgcgc tcagcatcag gaccggcgtc tgaagaccaa gcgcgcgtat tgcctttaaa
       61 atagtgagtc cgtccactcc gggcagcatg cgatcgagag taatagcggc atactggccg
      121 ctcatcgccc gcatcatgcc ctccggaccg ttatctaccc aatcaaccgt gaggccgtgc
      181 tcacgtagct cgttgattat ctcgtcggcg gcagccgggt catcttcaac cgtcaaaacg
      241 tgcaattggc tcatgaagca actccttcta atttgacgcg cctcgcgacg acgtgtacgg
      301 ccagcgtaaa tagcaaacct atcgcgctgc ccaacactac attgatcaag cgctcgctcg
      361 cgaaagtcca cggctggcca gcaaccacga acgccattgc cgcgcagccg cagcgcgtgc
      421 cgaatgcaag gacgtagggc cgaatgcaga cgagtgtcag caacgcagca aggacaatca
      481 ggtctcgcga gaaggcgtcg tgggggacca gcaaccctgc gaggataccg gccggcacac
      541 cgacagtggc ccccgtgatg cgatgacgga acttgagccg ggcgctcgcg gcacttccgg
      601 tcaccacgct cgctgcggac cagatcatcc attgtccatg ctcgatatgc cgccactcca
      661 cgagtgctgc tgcgacgccg acagcgagcg taacggcgat catcgcctcg acgtatggaa
      721 cacgatcgcc aatgtcggcg cgcgtggacc attttgtgaa gtgcgacacg cacgaaactt
      781 ccggacggtg ttggcgatag tggtcgattg aagcgatcag caggacaggc aagaaggcgg
      841 cccatatgaa cggaagagtt tcgaatcccc gatggataag cgctgcctgc ctgacccctt
      901 cggcgctctc gcaggcgagg tacagcacgg gaataaacgt aaagctgccg agcgaacgca
      961 gctcgcttcc ccgtgcgatc accaatatcg accccatcgc cagcagggcg gtggttccga
     1021 caaacagcgg tggcgaggcg agcgaggcca tcaataccat gaagcccgct ccgatggcta
     1081 tcccgtgagc gattaccgcg agcggggcga gacgcgagcg atccacggca atggcagtcg
     1141 acacggtcac caacgaaacc tccaaccatt cgggcttgcc tgaaaccaag gcgagaacgc
     1201 ccaatgggaa aagagcagcc aacacacgca caagtgccgt gccatcaatc gcggcagcaa
     1261 cgcgcgacac gagcgatgtg acgaattgat aaccgcgtct gcgcgcagac gaagcgatgg
     1321 cgaggcggtc acatgacgtg cggcgcatgg cttttccgta ggccagtatc agtccgcgag
     1381 tgcctggatc acatcctcgg actgccgcac caggccaagc ctcgggaaaa tgtaatcaac
     1441 cgacgcctgg tgatgctcca gcgctgcgca gctcatcgca tcctcgacga gcacgagggt
     1501 atagccgagt tcatggccgg ctcgcgctgt tgattcgacg ccgatattcg tcgaaattcc
     1561 gccgagcaca atggtcgtga tgccacggcg acgcaattgc agatcaagtt cagtgccatg
     1621 aaatgcgttc cactgccgct tggtgatctt gagatcgcct tcgtctactt cgagcgtttc
     1681 gggaaagtcc caccacgtcg agggaagtcc gccggcagga agcgttacgg gctgatcgac
     1741 gggttgcttc agggcatcgc cgaaatcgtg gctccagcct acgcgcacca gcacgacggg
     1801 cgcgccgatt tcccgaaagc gcttcgcgag cttcgccgag gctgtcagca cagactcggc
     1861 ggggcgcggg gcctttgcga atccaaggat tccctgctgg aggtcaatca gaacgagcgc
     1921 ggtcgtttgg gggtcgagtt tctgcaacat gtttgccgtc cattgatctt ggtgagccga
     1981 aagtgtattg tgaggcttgt ctcacatttt tattatatga gtatggcctc acaaacgtca
     2041 accgcaatat tgagtgccgg aagcgggcaa gcgaaatctc ctcagcgtgc gcgtggtcac
     2101 gcgcgcgtcg cggcgctact ggaggcggcg agcatcgaat ttgccgagaa gggatacgac
     2161 ggcgcaacga tgacggcgat cgc
//
LOCUS       DATGBK010001030         5317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_266923, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001030 DATGBK010000000
VERSION     DATGBK010001030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5317
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266923"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1598
                     /gene="acnA"
                     /locus_tag="VKJ77_14360"
     CDS             <1..1598
                     /gene="acnA"
                     /locus_tag="VKJ77_14360"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HMC46499.1"
                     /translation="LAGPKRPQDRIEIGNVKSNFTELFSAAVSDNGFGKKSADLNKQY
                     VTTNKVNVKNGDILIAAITSCTNTSNPSVLLAAGLLAKKAVEAGLTVAPHIKTSLAPG
                     SRIVTEYLTKTNLLTYLDQLGFTLAAYGCTTCIGNAGDLTPELNDAITKNDIVAAAVL
                     SGNRNFEARIHPNIRANFLASPPLVVAYAIAGNMTVDLMTEPVGKGKNGKDIFLGDIW
                     PTSEEVNSLLKYALDADAFRKNYAELTKTGDLWSKIEGEAGQVYDWPKSTYIAEPPFF
                     GKDFSMTPADSIPEVKGARPLGIFGDSVTTDHISPAGSIKESSPAGVWLKANGVQKAD
                     FNSYGSRRGNHDVMMRGTFANVRIKNLMIPLKADGSRVEGGVTIFQPSGEELSIYDAA
                     MKYIDAGTPTIVFAGEEYGTGSSRDWAAKGTQLPGVKLVVARSFERIHRSNLVGMGVL
                     PLQFKGTDSVQSLNITGEETFDLEGLTSDIKPQQEVTLVIHRKDGSEQRVTVLLRIDT
                     PIEVDYYKHGGILPFVLRSLLAA"
     gene            complement(1816..3264)
                     /locus_tag="VKJ77_14365"
     CDS             complement(1816..3264)
                     /locus_tag="VKJ77_14365"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003061837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HMC46500.1"
                     /translation="MSESTLSRHYPNTQLYIDGAWRAGSRDTAVVNPATEVEIGRLSL
                     ASEQHLAEAAEAAGRGFAAWRKVSAFDRSKLMRRAAQNLRDRAEEVAAIMTMEQGKPL
                     TESRIEVLGAADTIDWFAEEARRTYGRVIPARAGNVRQIVTREPVGPVAAFTPWNFPI
                     NQAVRKVSAALAAGCSVVLKGPEETPASCAALVQAYIDAGLPAGVLNLVFGVPADVSK
                     FLIAHPLIRKISFTGSTAVGKLLAAMAGEHMKRATMELGGHAPALVFADADIPRAAKL
                     LASAKFRNAGQVCISPTRFIVEESALEEFTEHFVATTKKLKVGNGLEEGVQMGALANG
                     RRLQAMERLVADAVEQGAKVLTGGERIGREGYFFAPTVLANVPMSARIMTEEPFGPIA
                     PISTFKSYDEAIVEANRLPYGLAAYAYTRSSATSAAVGEDIESGMVSINHHGLGIPET
                     PFGGVKDSGYGSEGGSEAMEAYLVTKFVSEAR"
     gene            3579..4625
                     /locus_tag="VKJ77_14370"
     CDS             3579..4625
                     /locus_tag="VKJ77_14370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HMC46501.1"
                     /translation="MPTKKPTSTPELRRFARTLVSCLLSYYVAKLATLPELYWAVITT
                     LIVVTQPSLNQALNTGRDQIIGAVIGGLVGVVGLFAILHGAQPLIVFSIALLPLAALA
                     AWRPTLRLACVTLVVVVLVPASGLGSPFARPIDRVLEILIGAGAALLVAFLMPNRAIN
                     TAHDRASEIVLALGELIALTLRKPGDANEAERLHRRSAAAEKALDEAITEAGREHIIV
                     PVKRTRGDVIDKVAPMLTRLHRDALFLGQAFTSDPQFAGRLSAANRDALNVTADAFTE
                     AAETLAATLDADRSDQDENIGLARGSFEKLRTASNTACESMEKYTVLAFVLNLLVQDF
                     GDLIATVEVLDKRA"
     gene            4764..>5317
                     /locus_tag="VKJ77_14375"
     CDS             4764..>5317
                     /locus_tag="VKJ77_14375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020655114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HMC46502.1"
                     /translation="MNDKLQQPDIIDDEPATLFERVTRRSFLTRVGAAGVAVSTGQLH
                     SLALADSDDAIQDGAPSGNVPTESGNVHVQLNVNGTLHELDIDPRTTLLDCVREHLRL
                     TGTKKGCDHGQCGACTVHVDGRRVNSCLSLAATHEGEAITTIEGIGRPGNLHPMQAAF
                     VEHDGFQCGYCTSGQIMSAVALLK"
BASE COUNT         1049 a         1672 c         1587 g         1009 t
ORIGIN      
        1 cgctggctgg cccgaagcgt ccgcaagacc gtatcgaaat cggcaatgtg aagtcgaact
       61 tcaccgagct gttctcggcg gctgtcagcg ataacggttt cggcaagaaa tcagccgatc
      121 tgaacaagca atacgtgacc acgaacaagg ttaacgtgaa gaacggcgac atcctgatcg
      181 ccgccatcac gtcgtgcacg aacacgtcga acccgagcgt gctgctcgcc gccggcttgc
      241 tcgcgaagaa ggccgtggaa gccggcttga ccgttgctcc gcacatcaag acgtcgctgg
      301 cgccgggatc gcggatcgtc accgagtacc tgacgaagac caacctgctg acgtacctcg
      361 accagctcgg cttcacgctg gccgcttacg gctgcacgac gtgtatcggc aatgcgggcg
      421 acctgacgcc ggaactaaac gacgcgatca cgaagaacga catcgtagct gctgccgtgc
      481 tgtccggtaa ccgtaacttc gaagcgcgta ttcacccgaa catccgcgcc aacttcctgg
      541 cttcgccgcc actggtcgtg gcttacgcca tcgccgggaa catgaccgtc gacctgatga
      601 cggaaccggt tggcaagggc aagaacggca aggacatctt cctcggcgac atctggccga
      661 cgagcgaaga agtcaactcg ctgctgaagt acgcgctcga tgccgatgcg ttccgtaaga
      721 actacgccga actcacgaag accggcgact tgtggagcaa gatcgaaggc gaagcgggtc
      781 aggtttatga ctggccgaag tcgacgtaca tcgctgagcc gccgttcttc ggcaaggact
      841 tttcgatgac gccggccgac agcattcctg aagtcaaggg cgcgcgtccg ctgggcattt
      901 tcggtgactc ggtcacgact gatcacatca gcccggctgg ttcgatcaag gaaagctcgc
      961 ccgcaggcgt gtggctgaag gcgaacggcg tgcagaaggc tgacttcaac agctacggct
     1021 cgcgtcgcgg taaccacgac gtgatgatgc gcggcacctt cgcgaacgtg cggatcaaga
     1081 acctgatgat cccgctgaag gcagacggtt cacgcgtgga aggcggcgtg acgatattcc
     1141 agccgagcgg cgaagaactg tcgatctatg acgcagccat gaagtacatc gatgccggca
     1201 cgccgaccat cgtgttcgcg ggcgaagagt acggcacggg ttcgtcgcgc gactgggccg
     1261 cgaagggcac gcaattgccc ggcgtgaagc tggtcgtggc gcgtagtttc gagcggattc
     1321 accgttcgaa cctggtcggc atgggcgtgt tgccgctgca gttcaaggga acggacagcg
     1381 tgcagtcgct gaatatcacg ggcgaagaaa cgttcgatct ggaagggctt acgtccgata
     1441 tcaagccgca acaggaagtg acgctcgtga tccatcgcaa ggatggcagc gagcagcgcg
     1501 tgacggtgtt gctgcgtatc gatacgccga ttgaagtgga ttactacaag cacggcggga
     1561 tcctgccgtt cgtgctgcgc tcgctgctgg cagcgtaagt tttctcgcag tagcttttgc
     1621 aggtgaccgc gcccttttga gatcagggcg cggaaacgtt gaacccggct tcggccgggt
     1681 tttttttcgg gtttatcgct ttgaaaacgg atacaagacg cccgtaaaag tccgggcgaa
     1741 accgccgaac aaaagaaaac gcgacgctcc gaaaggccgc gtcgcgtttt cacctgaagc
     1801 tatctgctat tcgacttacc gcgcttcgct cacaaacttc gtcacgagat acgcttccat
     1861 cgcttcgctg ccgccttccg agccataacc cgaatccttc acgccgccaa acggcgtttc
     1921 cggaattccc agcccgtggt ggttgatcga caccatgccg ctttcaatgt cctcgcccac
     1981 cgccgccgac gtcgcgctcg agcgcgtgta cgcatacgct gccagcccat acggcaagcg
     2041 attcgcttcc acgatagctt catcgtaaga cttgaaagtc gagatcggtg caatcgggcc
     2101 gaacggctct tccgtcatga tgcgagccga catcggcaca ttggcgagca ccgtcggcgc
     2161 gaagaaatac ccttcacggc cgatgcgttc gccgcccgtc agcaccttgg cgccctgctc
     2221 cactgcatcg gcgaccagcc gttccatcgc ttgcaggcgg cggccgttgg ccagcgcacc
     2281 catttgcacg ccttcttcca ggccgttgcc gaccttgagc ttcttcgtcg tcgcgacaaa
     2341 atgctccgtg aattcctcga gagcggattc ttcgacgata aatcgcgtcg gcgaaatgca
     2401 cacctgaccg gcattgcgga actttgcgct agccagaagc ttggctgcgc gcggaatgtc
     2461 ggcatcggcg aaaaccagcg cgggcgcgtg gccgccgagt tccatcgtgg cgcgtttcat
     2521 gtgctcgccg gccatcgcgg ccagcaactt gccgactgcc gtcgaacccg tgaacgagat
     2581 cttgcggatc agcggatgcg cgatcaggaa cttcgagaca tcggcgggaa cgccgaacac
     2641 gaggttcagc acgccggcgg gcaacccagc gtcgatgtaa gcctgaacca gcgccgcgca
     2701 gcttgccggc gtttcttccg gtcctttcag gaccaccgag caccctgccg cgagcgccgc
     2761 cgacaccttg cgcacagcct gattgatcgg gaaattccac ggcgtgaagg cggcgaccgg
     2821 gccgaccggc tcacgcgtca caatctggcg cacattaccg gcacgcgccg gaatcacgcg
     2881 gccgtacgtc cggcgcgctt cttcagcgaa ccagtcgatg gtgtccgccg cgcccagcac
     2941 ttcaatgcgc gattcggtca gcggcttgcc ctgctccata gtcatgatcg cggccacttc
     3001 ctcggcgcgg tcgcgcaggt tctgcgcggc acggcgcatg agcttgctgc gatcgaacgc
     3061 cgataccttg cgccaggccg cgaaaccgcg tccggccgcc tcggcggctt cggcgagatg
     3121 ctgttcgctt gccagcgaga gacggccgat ttccacttcc gtcgccggat tgacgacggc
     3181 tgtgtcgcgg ctgcccgcgc gccatgcgcc gtcgatgtac aactgcgtgt ttgggtaatg
     3241 acgcgataga gtgctttcgc tcatgcttgg ctcctgatgt tcgtggtttc ggggaaactg
     3301 ccgccggggt tgatccaaca ttctcaacat tcgacacccg gcgaattaac catttatggt
     3361 aacgcgatca cgagggtttt gctcgcggtg gagaatgaag gcgctgctgc gggccgctgc
     3421 aagcggcttt acgtcggatt ttctggtcgg tttgaactta aactggccgc tacggctggc
     3481 ggcgggaatc cggattgcac cgttctgctg ccgctggcaa aaccgccgcc aagcccgagc
     3541 cagacaaccc cgacaaaaac tcagccaata aacccctagt gcccacgaaa aaacccacgt
     3601 ctacgcccga acttcggcgc ttcgcccgca cgctcgtcag ttgcctgctc agctactacg
     3661 tcgccaaact cgcgacgctc cccgagcttt actgggcggt tatcaccacc ctgattgtcg
     3721 tcacgcagcc cagtcttaac caggcgttga acaccggccg cgaccagatc attggggcgg
     3781 taattggtgg actggtcggc gtggtcggct tgttcgccat cctgcacggc gcacagccgc
     3841 tcatcgtgtt ctccatcgca ctcctgccgc ttgcagcact ggccgcttgg cgtccaaccc
     3901 tccggcttgc ctgcgtcacg ctcgtcgtcg ttgtgctggt tccggcaagc ggcctaggct
     3961 cgccgttcgc acggccgatc gaccgcgtgc tcgagatctt gatcggagca ggcgccgcgc
     4021 tcctcgtcgc tttcctgatg ccgaaccgcg cgatcaacac ggcccacgat cgcgcgagcg
     4081 aaatcgtcct cgcgttgggc gaactgatcg cgctgactct gcgcaagccc ggtgacgcga
     4141 acgaagccga gcgtttgcat cggcgttctg ccgccgccga aaaggcactt gacgaggcca
     4201 ttaccgaagc ggggcgcgag cacatcatcg tgccggtgaa gcgcacgcgg ggggacgtga
     4261 tcgacaaggt cgcacccatg ctgacccggc tgcatcggga cgcgctgttt ctgggtcagg
     4321 ctttcaccag cgatccgcaa ttcgcgggac gactgagcgc ggccaatcgc gacgcactga
     4381 acgtgaccgc cgacgcattt acggaggctg ccgagacatt agccgccacg ctcgatgccg
     4441 atcgaagtga tcaggacgaa aatatcgggc ttgcgcgtgg gtcgttcgag aagctgagaa
     4501 cggcatcgaa cactgcttgt gaatcgatgg agaaatacac cgtgctggcc ttcgtgctga
     4561 acctgctggt ccaggatttt ggggatctga tcgcgacggt ggaagtgctg gataaacgcg
     4621 cataaaaacc ggctctccac ccgtgcgcca tgttgccgcc atctcgcggc catcttgacg
     4681 ccaccgcagt tgcctatcat gagtatcgga cgccaagacc acgtcggtcc tcttctatcc
     4741 gtgcttcaac gggaattcga ctcatgaacg acaagcttca acaaccggac attatcgatg
     4801 atgagccggc gacgctgttc gagcgcgtga cacgccgctc ctttttgaca cgcgttggtg
     4861 cggcgggtgt cgccgtgagc accgggcaac ttcattctct cgctcttgca gattccgacg
     4921 acgcaatcca ggacggtgcg ccaagtggca acgtaccgac agagagcggc aacgttcatg
     4981 tgcagttgaa cgtcaatggc acgctgcatg aactggatat cgatccacgc accaccctgc
     5041 tcgattgcgt gcgcgaacat ctgcgcctaa ccggcaccaa gaagggctgc gatcatggcc
     5101 agtgcggcgc gtgcacggtc catgtggatg gcaggcgcgt gaattcgtgc ctgtcccttg
     5161 cggccactca cgaaggcgaa gccatcacca cgatcgaagg cattggacgg ccaggcaacc
     5221 tgcatccgat gcaggcagcc ttcgtcgagc atgacggctt tcaatgcggc tactgtacct
     5281 cggggcagat catgtccgcc gtcgcgctgc tcaaaga
//
LOCUS       DATGBK010001031         2466 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290172, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001031 DATGBK010000000
VERSION     DATGBK010001031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290172"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..681)
                     /locus_tag="VKJ77_14380"
     CDS             complement(<1..681)
                     /locus_tag="VKJ77_14380"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HMC46503.1"
                     /translation="MIRVERRESGIVWITIDRPQARNAMTFAMWKELGEIARTLNADD
                     TVRVVGITGAGGKAFVSGTDISEFRNFDGEKGLQYEVLMDRAMASLDALWMPLIAAIG
                     GVCTGGGAAIASACDVRVGAPSTTVGAPIARTLGNVISLRNCARLANLIGLDAVKFLI
                     LTGRLVNASDALRLGFLNDMAPADDALDAHAYTTALSMSKLAPLTLRATKEMCRRFSA
                     ATPLPDAED"
     gene            complement(678..1883)
                     /locus_tag="VKJ77_14385"
     CDS             complement(678..1883)
                     /locus_tag="VKJ77_14385"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC46504.1"
                     /translation="MDSTTAPPLAGIRVIEAGNFMAVPFCGMQLADLGADVIKVENPQ
                     GGDLMRSAGPFLDGESSNFIRLNRNKRSVALDLISADGKALFKRLAATADIVIENFRP
                     GTMQKLGLDYSTLSAESPRIIYLAATGFGSSGAYAETAGLDIIAQGMSGLMSITGEAG
                     GPPVKVGVPIADLTCALYATIAVIAALRARDRDGHGQFIDVSLLESAVSLGVWEAGRY
                     FATGEVPQAQGSAHQSIAPYQAFRSADGYFTFGANSHAHWLKSCAVLGRDDFTKDERY
                     MTNADRMAHRPELVTDIEAVTGTQSSAYWIERFTAAGIPCGPIWAFDRVYADEHLAER
                     GFFTDAPHATLGNVRHVASPMHFSRTPATIERSGPVLGADTAEVLRELGVDDREVTRL
                     ANAGITAAK"
     gene            1943..>2466
                     /locus_tag="VKJ77_14390"
     CDS             1943..>2466
                     /locus_tag="VKJ77_14390"
                     /inference="COORDINATES: protein motif:HMM:NF024922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HMC46505.1"
                     /translation="MRQLGLFVTGAEPTVLVGRGGDVTYVPEFLDAALGAVLFRELAE
                     TTTWRADSRLMFGRRVMVPRETAGGAKMPQEWTPTLARVRAIVEAHAGTTFDYVFLNR
                     YRNGHDSVAWHNDDDAEEDPRRVIASLSLGATRTFELRPLRASGLNYRKIAVEVAHGD
                     LILMQGDTQLNWEHR"
BASE COUNT          461 a          748 c          794 g          463 t
ORIGIN      
        1 gtcttcggcg tcgggcaagg gcgtcgcggc gctgaacctg cggcacattt ctttggtagc
       61 gcgtaacgtc agtggcgcga gtttgctcat tgacagagcg gtggtgtacg cgtgggcgtc
      121 gagggcatcg tcggcgggag ccatgtcgtt gaggaagcct aagcgcagcg cgtcgcttgc
      181 gttgacgagg cggccggtaa gaatgagaaa cttcacggcg tccaggccaa tgaggtttgc
      241 aaggcgcgcg cagttgcgta gcgagatcac gttgccgagc gtgcgcgcga tcggcgcgcc
      301 caccgttgtg cttggcgccc caacgcgcac atcacaagcg ctagcgatag ctgcgccgcc
      361 gccggtgcac acaccgccga tcgctgcgat gagcggcatc cacaaagcgt ctagcgacgc
      421 catcgcccga tccattagga cttcgtactg caggcctttc tcgccgtcga agttgcgaaa
      481 ctcgctaata tccgtgcccg aaacgaacgc ctttccgccg gcgcccgtaa tgccgacgac
      541 gcgcaccgta tcatcggcgt tcagcgtacg cgcgatttcg ccgagctctt tccacatcgc
      601 aaacgtcatc gcgttacgcg cttggggccg atcgatcgta atccagacga tgccgctctc
      661 acggcgttcg acgcgtatca tttcgccgcc gtaatcccgg cgtttgctaa acgcgtgact
      721 tcacgatcat cgacgcccag ttcgcgcaag acctcggccg tgtcggcgcc gagaacggga
      781 cctgaacgct cgatcgtcgc cggagtgcgt gagaagtgca tcggcgaagc gacgtgccgg
      841 acgttaccga gcgtggcgtg cggagcatcg gtgaagaagc cgcgttcggc aagatgctcg
      901 tcggcataca cgcgatcgaa cgcccaaatc gggccgcacg gaattcccgc cgcggtaaac
      961 cgctcgatcc agtacgcgct cgattgcgtt ccggtgaccg cttcgatatc ggtaacgagt
     1021 tcggggcgat gtgccatccg atcggcgttg gtcatgtagc gttcatcttt cgtgaagtca
     1081 tcgcggccga gaaccgcgca gcttttgagc cagtgtgcgt gtgagttggc gccgaaggtg
     1141 aagtatccat cggcgctgcg aaacgcttga tacggcgcga tcgattgatg cgcggaacct
     1201 tgtgcctgtg gcacctcgcc cgtcgcaaag tagcggcccg cttcccaaac gccgagcgac
     1261 acggccgatt caagcagcga aacatcgatg aactgaccgt gcccgtcgcg gtcgcgggca
     1321 cgcaatgcag cgatcacggc gatcgttgcg tacagcgcac aagtgaggtc cgcaatcggc
     1381 acgcccactt tcaccggcgg cccgcccgct tcgccggtga tgctcatcaa gcccgacatc
     1441 ccttgcgcga taatatcgag accggcggtc tcggcatagg cgcccgatga gccaaatccc
     1501 gtcgctgcaa gataaatgat gcgcggcgat tcggcggaga gcgtagaata gtccagtcca
     1561 agtttttgca tcgtgccggg ccggaaattt tcgatcacga tatccgcggt tgcggctagg
     1621 cgtttgaaga gcgctttgcc gtcggccgat attaggtcca gcgcgacgct gcgcttgttc
     1681 cgattgaggc ggatgaagtt cgagctttcg ccgtcgagaa acgggccggc cgagcgcatg
     1741 aggtcgccgc cctgcggatt ctcgaccttg atgacgtcgg cgcccaaatc ggcgagttgc
     1801 atgccgcaaa acggcacggc catgaaattt ccggcctcga tcacgcgaat gccggccagg
     1861 ggcggagcgg tcgtggagtc caaggtgctc ggggttcggg gaggcgggcc aaaaaccgct
     1921 atcgaacata tgtacgatag ttatgcgaca actcggcctc tttgtcaccg gcgctgagcc
     1981 gacggtcctt gtcgggcggg gcggcgacgt cacctacgtc ccggaatttc tcgacgcggc
     2041 gctcggggcc gtgctgttcc gggagctggc cgaaacgacg acctggcggg ccgactcgcg
     2101 cttgatgttt ggccgccggg tgatggttcc gcgcgaaacg gcgggcgggg ccaagatgcc
     2161 gcaggagtgg acgccgacgc ttgcccgcgt tcgcgcgatc gttgaagcgc acgccggaac
     2221 aacgttcgac tacgtctttc tcaaccgtta ccggaacggt cacgatagtg tcgcctggca
     2281 caacgacgat gatgccgaag aagatccgcg acgcgtgatc gcttcgctaa gtttaggcgc
     2341 gacgcgcacg ttcgagctgc gtccgttgcg ggcgagcggc ttaaactatc gcaagatcgc
     2401 cgtcgaagtc gcgcacggcg atttgattct tatgcaaggc gacacgcagc tcaattggga
     2461 gcatcg
//
LOCUS       DATGBK010001032         1540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313093, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001032 DATGBK010000000
VERSION     DATGBK010001032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313093"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(244..1404)
                     /locus_tag="VKJ77_14395"
     CDS             complement(244..1404)
                     /locus_tag="VKJ77_14395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14-type cytosolic carboxypeptidase"
                     /protein_id="HMC46506.1"
                     /translation="MSISITSQFDAGAIDVVSADDPAAIRLRVRPDSHADFAQWFYFR
                     VSGVRDEPLTMTFENAADSAFADGWREYRAVASYDRINWFRVPTRYDGRVLTIEHTPD
                     FDAVYYAYFEPYSEERHAGFLGAVQQMPHATLTEIGQTVQGRPMSLVSLGLTEATERP
                     VKPKKNVWIIARQHPGETMAEWFVEGLIKRLAGWGDWAGDPVARLIFDHAVFHIVPNM
                     NPDGSVLGNLRTNAAGANLNREWMEPDAARSPEVLAVRNAIHALGCDLFFDIHGDEAL
                     PYVFVAGSEMLPGFTEKQAQEQKAFIECFKQASPDFQDVYGYEASKYQTDALKLASKY
                     VGNEFGCLSLTLEMPFKDNANLPDERVGWNGERSAALGASMLQAILRHLQAF"
     gene            complement(1437..>1540)
                     /locus_tag="VKJ77_14400"
     CDS             complement(1437..>1540)
                     /locus_tag="VKJ77_14400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017331598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HMC46507.1"
                     /translation="EPEGLKAFESEGYAFDKKASTETSYVYRRRLGL"
BASE COUNT          328 a          497 c          411 g          304 t
ORIGIN      
        1 gtaaaggcaa gacgagttca aaatcaacga gcagcaagcc aacgaaaaaa tcggcgagca
       61 agaagaagca ctgagctgcc gtcctgtgag tcaccgtcca ctgagctgcc gtatcgagct
      121 cgaacgacaa tacaaaaggg cgtgatcgcc gtccagcgga tcacgccctt ttgattcagg
      181 tccttctgga atgcacacgc atcgcgcgca ttcaccggcg cttaatcact ccgctcgccc
      241 gcctcagaac gcctgcagat gccgcaggat agcctgaagc atcgacgccc ccagcgcagc
      301 gctgcgctcg ccgttccatc caacccgctc gtcaggcaga tttgcgttgt ccttgaacgg
      361 catctctagc gtcagcgaca aacagccgaa ctcattgccc acatatttag acgccagctt
      421 caacgcgtcc gtctggtact tgctcgcttc atagccatac acgtcctgaa aatcgggact
      481 cgcctgcttg aagcattcaa tgaacgcctt ctgttcctgc gcctgttttt cggtaaagcc
      541 gggcagcatc tccgatccgg ccacgaacac gtatggcaat gcttcgtctc cgtggatatc
      601 gaagaaaaga tcgcagccca gcgcgtgaat ggcgttacga acggccagca cttcagggct
      661 gcgcgccgcg tcgggctcca tccattcgcg attcaggttg gcacccgcgg cgttcgtgcg
      721 cagattgccg agcacgctgc catcgggatt catgttcggc acaatatgga acacagcgtg
      781 atcaaagatc aatcgcgcga cagggtcgcc cgcccagtcg ccccagccgg ccagccgttt
      841 gatcagccct tccacgaacc actcggccat ggtctcgccg ggatgctgac gcgcgatgat
      901 ccacacgttc ttcttcggct tcaccggacg ctcggtcgct tcggtcaacc caagcgacac
      961 cagcgacatc ggcctgcctt gcaccgtttg gccgatttcc gtcagcgtcg cgtgcggcat
     1021 ctgctgaacg gcgccaagga aacccgcatg gcgctcttca ctatacggtt cgaaataggc
     1081 gtaatacaca gcgtcgaaat ccggcgtgtg ctcgatggtc agcacgcgac cgtcgtaacg
     1141 cgtgggtacg cgaaaccagt tgatccggtc atagctcgcg accgcccgat actcgcgcca
     1201 gccatcggcg aacgcgctgt cagcggcgtt ctcgaatgtc atcgtgagcg gctcgtcgcg
     1261 cacgcccgag acgcggaagt aaaaccactg cgcgaagtcg gcgtggctgt ccggacgcac
     1321 acgcaggcga atggccgcgg gatcgtcggc agacacgacg tctatcgcgc ctgcatcgaa
     1381 ttgactcgtg attgaaatgc tcatgacgct tccttaataa cgtgtgctcg ttgcgctcaa
     1441 agacccagcc gcctgcgata cacataactc gtttcagtcg atgccttttt atcgaaggca
     1501 taaccttcgc tctcgaaagc cttaaggcct tccggctcgt
//
LOCUS       DATGBK010001033         3747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290197, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001033 DATGBK010000000
VERSION     DATGBK010001033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290197"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..284
                     /locus_tag="VKJ77_14405"
     CDS             <1..284
                     /locus_tag="VKJ77_14405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase"
                     /protein_id="HMC46508.1"
                     /translation="GRPVRPLDVDLRWVGALLYKNGAIEESGLAAAVLNHPATGVAWL
                     ANKIAPYDESLREGDVILAGSFTAPVKAFAGDTFHVDYGPLGAIGLHFV"
     gene            488..1264
                     /locus_tag="VKJ77_14410"
     CDS             488..1264
                     /locus_tag="VKJ77_14410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013435003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HMC46509.1"
                     /translation="MTASERNTLPAPAWCSPDEWEARLNLAATYRVFHMLGWTELIFN
                     HITLRVPGPDKHFLINPFGLTYDEVTASNLVKIDLNGKILSPSDYPVNPAGFVIHSAI
                     HEHVEDAHCVMHTHTTAGLSVACMEDGLSYTNFYSAQLHNMVAYHPFEGITVHDEEKS
                     RLLSSMGNKRLLILRNHGLLSHGTTLAHAFALLWTLNRACEVQVVTHSMRGNTLPISD
                     EIVKGTTRDSLQFSPAHGAGENVLAALIRRVDRIDASYRG"
     gene            1267..2274
                     /locus_tag="VKJ77_14415"
     CDS             1267..2274
                     /locus_tag="VKJ77_14415"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: protein motif:HMM:NF005089.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008677 - 2-dehydropantoate 2-reductase
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HMC46510.1"
                     /translation="MNQQAIRITVVGGGAIGGIVAARLARAGVAVNLLARGPHLDAMQ
                     RNGLTVVEGDDRYVVDINATDQPGSLGAQDLLFICLKGPALIQAASSLAPLVDAGTHI
                     VSAMNGVPWWFLNSFGGHLEGQRLESVDPAGVVSSALPPSQVSGCVVHLSSSIAEPGV
                     IKKGNGNQLIVGAAAPGVTDQAARAIELLRLAQFDVTASSQIRSDIWAKLWGNMTMNP
                     ISAITRSTADVILDDPLTAQLVVSIMEEARRIGEEIGIELNMTAQARNAQTRKLGAFK
                     TSMLQDVEAGRQLEIEAILGAPHELAAKAGIPVPFLSVLYGLAGQLNANLKGNANAPT
                     R"
     regulatory      2458..2607
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01482"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="The adenosylcobalamin (AdoCbl) riboswitch is found
                     in the 5'-untranslated regions of vitamin B12 (Cobalamin)
                     related genes in bacteria; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF01482"
     gene            2850..3641
                     /locus_tag="VKJ77_14420"
     CDS             2850..3641
                     /locus_tag="VKJ77_14420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006490619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46511.1"
                     /translation="MSCGLHIDHLSWSPAERERHEQAHLLREITLDAADGEFVGLIGP
                     NGSGKTSLLRCAFRFSAPHEGSVALDTTDVWDASPRWAAQRIAVLLQESPDDFGLTVE
                     QLARMGRTPHKRLLDGDTAEDARIVEGALRDVDLWDERNRAFASLSGGEKQRALLARA
                     LVQRPSVLMLDEPTNHLDLRHQIELLKLVKNQNITTLATIHDLNLAAAFCDRLYVIAN
                     GAIVTHGTPEEVLTSSMLKTVFDVEAIVDRHPVSQCPRITLIHST"
BASE COUNT          740 a         1159 c         1084 g          764 t
ORIGIN      
        1 gcgggcggcc cgtgcgtccg ctcgacgtgg atttgcgctg ggtcggcgcg ttgctttaca
       61 agaacggcgc aatagaagaa agcggtctgg ccgccgccgt gctgaatcat cctgcaaccg
      121 gcgttgcgtg gcttgcaaac aagatcgctc catacgatga gtccctgcgc gagggcgacg
      181 tgattctcgc cggctcgttc accgcacccg tcaaggcctt tgcgggcgat acattccatg
      241 tggactacgg tccgctgggt gcgatcggtc ttcatttcgt ttagcaccat cgactaatga
      301 accctatcca gaaccccttc agacatgcgc tcgccgcaga gcgcccgcag gcgaggatgt
      361 acatcggttc tacgcttcga accagacgat cgcttagcac ccacgcgctt cgatcagtcc
      421 acaaagcgca gaataagcaa ttcctgaact tgattgcacg cgccatgaca gtcagaggag
      481 acacactgtg accgcttccg aacgcaacac gctgcccgca cccgcctggt gttcgcctga
      541 cgaatgggag gcccggctca atctcgccgc aacgtatcgc gtgtttcata tgctcggctg
      601 gaccgagctg attttcaatc acattacgtt gcgtgtgccc ggtccggaca agcacttcct
      661 gatcaaccct ttcggactga cttacgacga agtcacggct tccaacctgg tcaagatcga
      721 cctgaacggt aaaatcctga gtccgtcgga ttacccggtc aatcccgcag gtttcgtcat
      781 tcatagcgca attcacgagc atgtggaaga cgcacattgc gtcatgcata ctcatacaac
      841 cgccgggctc tccgttgcgt gcatggaaga cggtttgtcg tacacgaact tctactccgc
      901 ccagttgcac aacatggttg cgtaccatcc gttcgagggc attacggtcc acgacgaaga
      961 gaagtcgagg ctgctaagct cgatgggcaa caaacgcctg ctgatccttc ggaaccacgg
     1021 gctgctctcg cacggaacca cgcttgctca cgcgttcgcg ttgctctgga ccctgaaccg
     1081 cgcgtgcgag gttcaggtcg tcacgcactc catgcgtgga aatacgctgc ccatcagcga
     1141 tgaaatcgtg aaaggcacca cgcgggattc gctacaattt tcgcctgcgc acggcgccgg
     1201 ggaaaatgtc cttgccgcac tcattcgacg cgtcgatcgc atcgacgctt cttacagggg
     1261 atagatttga atcaacaagc aatcagaatc accgtggttg gcggcggtgc catcggcggt
     1321 atcgttgcgg ctcgactggc gcgggccggc gttgcagtga accttctggc gcgcgggccg
     1381 catcttgacg ccatgcaacg caatggcctg accgtcgtgg aaggcgacga ccgttatgta
     1441 gtcgatatca acgcgaccga tcaacccggc tcgctcggcg cgcaggacct gctgttcatc
     1501 tgcctgaagg gcccggcact gatacaggca gccagctcat tggcgccgct cgtggacgcg
     1561 ggtacacaca ttgtttctgc aatgaacggg gtgccctggt ggttcctgaa ctcattcggt
     1621 ggtcatcttg aagggcagcg gctcgaatcg gtcgatccgg caggtgtagt gtcttctgcc
     1681 ctaccgccgt cgcaggtctc gggctgtgtc gtgcatcttt cctcgtcaat cgccgagccc
     1741 ggtgtgatta aaaagggcaa tggcaaccag ctgattgtcg gggccgccgc tcccggcgtc
     1801 accgatcagg ccgcccgtgc tatcgaattg ctccgcctcg ctcaatttga cgtaacagca
     1861 tcgagccaga ttcgcagcga tatctgggcc aagctgtggg gcaacatgac catgaacccc
     1921 atcagcgcga taacccgttc gaccgccgac gtgattctcg acgacccgtt gacggcgcag
     1981 ctcgtggtct cgatcatgga ggaggcacgg cgcatcggcg aagagatcgg tattgaactg
     2041 aacatgactg cccaggcgcg caacgcgcaa actcgcaaac tcggggcgtt caagacatcg
     2101 atgctccagg acgtggaagc aggtcgtcaa ctggagatag aagcgatcct gggcgcgcct
     2161 catgagctgg cagcgaaggc tggaatcccg gtgccgtttc ttagcgtgct gtatgggctc
     2221 gccggccagt tgaatgccaa tttgaaaggc aacgcgaacg cgccgacgcg ctaggcatct
     2281 gcgtacgtct gctgaacctt cctctgggga acatccctcc agcgacgacc gcgcttgtgc
     2341 caagagggcg aacgggcatc gtcgatgtga tcgttcaggc cggggccagg ctcgaaacaa
     2401 gcgtcgtgca agcgccccgt cagcttcaga aattttgtcg tgcaatggtt tctttcggac
     2461 gtaaaatgcg cggctacgac gtttggaagc cggtgagaat ccggcacggt cgcgccactg
     2521 taactggtca ggaaagggcc agaagtcaga cctgggcgtc gtaaccctgc cattgactat
     2581 agggcgcgaa acccccggag atccctgcat gacccacgct ctcagcgtcc tgatactccc
     2641 cgtaccactg cttccctcga ttgatcgacc gcgctgctaa caccctcgcc cgggttttca
     2701 agcgcgccgc cggacaaagc cgcgtccgct gtatctgcgc aacctggcga accgcgctta
     2761 cgccgtgacg tcgtccaacg acggcgcgca atggttgctt ggccccgcgc gctccgctga
     2821 aattatcgcc accatgagct tctgatccca tgtcctgcgg acttcacatc gatcatctga
     2881 gctggtcgcc cgctgaacgc gagcggcatg agcaagcgca cttgctgcgc gagatcacgc
     2941 tcgacgcggc ggacggcgag ttcgtcggtt tgatcggccc gaacggaagc ggcaagacga
     3001 gcttgctccg atgtgcgttt cgtttctcgg cgccccacga aggctccgtc gcgctggaca
     3061 caacggatgt ctgggacgcg tcgccgcgct gggccgcaca gcgtatagcg gtcttactgc
     3121 aggaatcgcc cgacgacttc ggtctcacgg tcgagcagct cgcgcgcatg ggccgcacgc
     3181 cgcataagcg cctgcttgac ggcgatacgg ctgaagacgc gcggattgtg gaaggcgcgt
     3241 tgcgtgacgt cgatctatgg gatgagcgaa accgtgcgtt cgcttcgctc tcgggtggcg
     3301 agaaacagcg tgcgctgctc gcacgtgcgt tggtgcagcg tccgtctgtg ttgatgctgg
     3361 acgagccgac gaaccatctc gatcttcgtc accagatcga gttgctgaaa ctggtcaaga
     3421 accagaacat cactacgctg gcgaccatcc acgacctgaa ccttgcggct gctttctgcg
     3481 atcggctcta cgtgattgcg aacggcgcga ttgtcacgca cggcacgccc gaggaagtcc
     3541 tgacgtcatc catgctcaaa acggttttcg atgttgaagc aatcgtcgac cgtcatccgg
     3601 tctctcaatg tcctcgcatc acgctcatcc attcgacatg atccgatcct tccttcttgc
     3661 gtccgcagca ttgttcctgg cctcggtttc tacgcaggcg aatgccggcg gctaccccgt
     3721 caccatccaa agctgtaatc gcgaagt
//
LOCUS       DATGBK010001034         2325 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313146, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001034 DATGBK010000000
VERSION     DATGBK010001034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313146"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /locus_tag="VKJ77_14425"
     CDS             <1..513
                     /locus_tag="VKJ77_14425"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090174.1"
                     /note="FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes
                     a condensation reaction in fatty acid biosynthesis:
                     addition of an acyl acceptor of two carbons from
                     malonyl-ACP; required for the elongation of short-chain
                     unsaturated acyl-ACP; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HMC46512.1"
                     /translation="LVLESLDHALSRGARIHAELTGFGHCTDGAGMVSPHASGIARAM
                     RAALDEAGTHPSYINTHAPSTLLGDVEELDALCDVFGADIPLFSSTKGLSGHPLGACG
                     VHEAIYTLLMMRDGFIAGTGPIETPDPRTDGMPLVRVSRPMTIDTAMSISFGFGGSCA
                     SLVFDAWKSA"
     gene            584..1021
                     /locus_tag="VKJ77_14430"
     CDS             584..1021
                     /locus_tag="VKJ77_14430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase"
                     /protein_id="HMC46513.1"
                     /translation="MKSKYAFGGLMVVVATLSGCATQVKSLPLAPVVAQSARPSPGAQ
                     VALYFGSQDHPAVQSQLGQTTASVRIARETDGQDAACNRALAAALEKLRAYARDRHAN
                     AVINVGTSFHSTESASATEFTCGVSPSAAALRVRGDVVVLDAQ"
     gene            complement(1076..1813)
                     /locus_tag="VKJ77_14435"
     CDS             complement(1076..1813)
                     /locus_tag="VKJ77_14435"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HMC46514.1"
                     /translation="MSSSEISNVAFVPETAFGLWFLRTATWEHHVLRVAINDLKRLID
                     TPLPAAPVIVDVGCGQGQSFRLLGNAFKPGRIIGVDFHEPSLVEARRAAHACSQDDGW
                     ATEIELLQGDCARLPLPDASADIVFCHQTFHHLVDQGRSLAEFRRVLKPGGVLLFAES
                     TDAYIKSWVIRLLFRHPMQVQKSADGYLDMIRNAGFAFGPQNVSMPYLWWSRAADFGL
                     LERLGLHRPLPGKRRETLVNVAAIKAG"
     gene            1967..>2325
                     /locus_tag="VKJ77_14440"
     CDS             1967..>2325
                     /locus_tag="VKJ77_14440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HMC46515.1"
                     /translation="MNINFSKQDTTVDVAIIGAGPSGAVAAALLRKAGRSVLVLERQH
                     FPRFSIGESLLPQSMAYVEEAGMLQAVVEAGFQYKNGAHFIYRDQSSSFDFRDKHTPG
                     WGTTYQVERAVFDDLLIR"
BASE COUNT          491 a          659 c          724 g          451 t
ORIGIN      
        1 ctggtgcttg agtcgctcga ccacgcgctg tcgcggggcg cacgcattca tgctgagctg
       61 acaggcttcg gccattgcac ggacggtgcg ggcatggtga gtccgcatgc atcgggcatc
      121 gcgcgtgcga tgcgtgccgc actcgacgaa gccggcacac atccctcgta tatcaacacg
      181 cacgcacctt ccacgctgct tggcgacgtc gaagaactgg atgcgttgtg tgatgtattc
      241 ggcgctgaca tcccgttgtt ttcatcgacg aagggattgt ccgggcatcc gcttggagca
      301 tgtggcgtgc acgaggcgat ctacaccttg ctgatgatgc gcgatggttt tatcgccggg
      361 acggggccga tcgaaacgcc cgatccgcgc acggatggca tgccacttgt gcgcgtgtcg
      421 cggccaatga cgatagacac cgcgatgtcg atttcattcg ggttcggcgg cagttgcgcc
      481 agcctggtct tcgatgcgtg gaagagtgct tgaaaacggt ccactcagcg tagcaaccgt
      541 aatgaacaca acggccgtaa caataactaa ccggggaaac acgatgaaga gcaagtatgc
      601 gtttggtggg ctgatggtgg ttgtagcgac gttgtccggg tgtgctacgc aagtgaagtc
      661 gttgccgctt gcgccggtgg ttgctcagtc cgctcggccg tcaccgggtg cgcaggtcgc
      721 gttgtatttt ggctcgcagg atcatcctgc cgtgcaaagt cagcttggac aaaccactgc
      781 gtcggtgcgt atcgcgcgtg agaccgatgg gcaggacgcg gcatgcaacc gtgcgctcgc
      841 cgctgcgctg gagaagttgc gcgcgtatgc ccgggaccgt cacgcgaacg ccgttatcaa
      901 tgttgggacg agttttcata gcactgaatc ggcgtcggcc accgagttca cctgtggcgt
      961 gagccccagc gcggcggcct tgcgggtgcg tggggatgtt gttgtgcttg acgctcagta
     1021 acctggaatt aacgtggaaa tctgaagcaa agctgcgatc aaggtcaagg tcaattcaac
     1081 ctgccttgat cgcagccaca ttgacaagcg tttcacgacg cttgcccggt agcggccgat
     1141 gcaaccccag ccgttcaagg agtccgaagt ccgcggcacg actccaccac aggtagggca
     1201 tggaaacgtt ttgtggaccg aatgcaaagc cggcgttgcg gatcatatcg aggtaaccgt
     1261 cggcactttt ctgcacctgc atgggatggc gaaacagcaa gcggatcacc caggacttga
     1321 tataggcatc ggtggattca gcgaatagca acaccccgcc gggtttcagt acgcggcgaa
     1381 attcagccag cgagcggcct tgatccacga gatgatggaa tgtctgatgg cagaacacga
     1441 tgtcggcgct cgcatcgggc aagggcagcc gcgcgcagtc gccttgcagc agttcgatct
     1501 cggtcgccca gccatcgtcc tgcgagcaag cgtgcgcggc acgccgggct tcgacgagcg
     1561 aaggctcatg aaaatcgact ccgatgatcc ggccaggttt gaacgcgttg cccagcagcc
     1621 ggaacgattg accttgcccg cagcctacat cgacgattac cggagccgcg ggcaggggag
     1681 tatcgatcag gcgcttgaga tcgttgatcg cgacccgcag cacgtgatgc tcccacgtgg
     1741 cagtacgtag aaaccatagc ccgaaagccg tctccggcac gaaggcaaca ttggatattt
     1801 cggatgacga cacgaatttc tctccggcaa caaaggatgc gaacagggcg cacgtcattg
     1861 tactggcaag catggcacgc gtagaagcac gagcaggaaa gacgatcaat gtaacgtgga
     1921 ccgcacgaca ttccacagac agccccaggg cctagacgag gcacgcttga atattaattt
     1981 ttcgaaacaa gacacgactg tcgatgtcgc catcatcggc gcgggcccct caggggcggt
     2041 cgcggccgcg ctgctgcgaa aagcaggccg ttctgtactc gtgctcgagc gccagcattt
     2101 cccgcgcttt tcaatcggcg agagcctgtt gccgcaaagc atggcgtacg tggaagaagc
     2161 cggcatgcta caggccgtcg tcgaggcagg gttccagtac aagaacggcg cgcattttat
     2221 ttacagggac caatcgtcat ccttcgattt ccgcgataaa cacacgccgg gatggggcac
     2281 gacgtaccag gtcgaacgcg cggtattcga cgacctgctg atccg
//
LOCUS       DATGBK010001035         2874 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_36087, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001035 DATGBK010000000
VERSION     DATGBK010001035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2874
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36087"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VKJ77_14445"
     CDS             complement(<1..490)
                     /locus_tag="VKJ77_14445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase-related protein"
                     /protein_id="HMC46516.1"
                     /translation="MEAKPVHFARLQQEESAGYDRSTIDYIHTAAQRGLYEIRGLGAK
                     RKVPHFDDLLFLGASLSRYPLEGYREKCATKTVLGTRFAKKPVVLDIPITIAGMSFGA
                     LSANVKEALGQAATAMGTSTTTGDGGITQEERRSSKTLVYQCLPSRYGWNPDDVRRAD
                     AIE"
     gene            complement(517..1206)
                     /locus_tag="VKJ77_14450"
     CDS             complement(517..1206)
                     /locus_tag="VKJ77_14450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein glxC"
                     /protein_id="HMC46517.1"
                     /translation="MESVIFDLEKASVREVNQFLHGAPETLEGRQVTVVSPNGAHNLA
                     VGVDAPVQVLIDGHAGYYAGGMNKHATIIVEGSAGTGVAENMMSGKVHVKGFASNGAG
                     ASAHGGLLVIDGDAGLRCGISLKGGDIVVGGSVGSFSAFMAQAGRMVICGDAGDALGD
                     SLYEAVLYVRGSVKSLGADAQYEEMTDADVSAVRDLLKAAGLNHDPMSFRRIASARTL
                     YHWNADANQEY"
     gene            complement(1194..2102)
                     /locus_tag="VKJ77_14455"
     CDS             complement(1194..2102)
                     /locus_tag="VKJ77_14455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HMC46518.1"
                     /translation="MCGIVGLLVKTPALREQLGALMVPMLIGMTERGPDSAGLAVFSQ
                     PLDAAKRKLSLYSGFTPEGDRFDWKGLTAALNGAMNVDAQVDVQGNHAVLTLAGDPEG
                     VKSWLRAAFPLVYLLSTGRSIDLYKDIGTPAQVAARYDFANLKGSHLVGHTRMATESA
                     VTPDRAHPFTAGEDFCLVHNGSLSNPYGVRRMLEPQGIHFDTDNDTEAACRFLEWRLR
                     EGDELPVALQKGFEELDGFYTFLMGTSTELALIRDPFACKPAVVAETDDYVAIASEFR
                     SLAHLPDIKHAKVFEPAPEEMYVWKA"
     gene            complement(2114..>2874)
                     /locus_tag="VKJ77_14460"
     CDS             complement(2114..>2874)
                     /locus_tag="VKJ77_14460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type III glutamate--ammonia ligase"
                     /protein_id="HMC46519.1"
                     /translation="FEINYTYTDCLTSCDHYVFFKMAASEIANEMGLICSFMPKPFAN
                     RPGNGMHMHMSIGDGVSNLFSDKSDPSGMGLSKLAYHFTAGLLAHAPALTALCNPTVN
                     SYKRLVVGRSLTGATWAPAYISYGDNNRSTMVRVPGERIELRLPDGACNPYLATAAVI
                     AAGLDGVERELSPGAPANENLYEWSPAKLKEHGIGVLPQNLEHALDALESDRLICDAL
                     GPVADEFLKLKRMEWLEYMRHVSDWEMKSYLEFF"
BASE COUNT          553 a          921 c          823 g          577 t
ORIGIN      
        1 cttctatcgc atcggcgcgg cgtacatcgt cgggattcca gccatagcgc gatggcaggc
       61 actgataaac cagcgtcttg gacgagcggc gctcttcctg cgtaatgccg ccatcgccgg
      121 tcgtggtgga tgtgcccatc gcggtcgcag cctgccccag cgcttctttc acgttagccg
      181 agagcgcgcc gaaactcatc cctgcaatgg tgatcgggat atccagcacg acgggcttct
      241 ttgcaaagcg cgttccaagc acggtctttg tcgcgcattt ctcgcgatag ccttcgagcg
      301 gataacgtga aagcgatgcg ccgagaaaca acaggtcatc gaagtgcggg actttacgtt
      361 tcgcgccgag gccacgaatt tcatacaggc cgcgctgtgc cgcggtgtgg atatagtcga
      421 tcgtgctgcg gtcataacct gctgactctt cttgttgcag ccgggcaaaa tgaaccggtt
      481 tggcttccat ggggaccttc tctgaagaac gtgatgtcaa tattcctggt tcgcgtcggc
      541 gttccagtgg tagagggtgc gtgccgaagc aatgcgtctg aacgacatcg gatcgtgatt
      601 caatcccgcg gctttcagca gatcgcgaac cgccgagaca tcggcgtcgg tcatctcttc
      661 gtactgtgcg tcggcgccaa gggacttcac cgaaccgcgt acgtagagca cggcttcgta
      721 gagggagtcg ccaagggcat cgcccgcgtc gccgcagatc accatgcggc ccgcctgcgc
      781 catgaacgcc gagaagctgc cgaccgaccc gccgaccaca atgtcgccac ctttaagcga
      841 gattccgcac cgcaggccag cgtcgccgtc gatcacgagc aggccgccat gcgccgatgc
      901 ccctgcgcca ttcgacgcga agcctttcac gtggaccttg ccgctcatca tgttttccgc
      961 gacgcccgtg cccgcgctac cttccacaat gatagtcgcg tgtttgttca tgccgcccgc
     1021 gtaatagccc gcatgtccgt cgatcagcac ctgtaccggg gcatccacgc cgaccgccag
     1081 gttgtgagcg ccgttcggtg acacgaccgt cacctgccgg ccttcgagcg tctcgggtgc
     1141 gccgtgaaga aactggttga cctcgcggac cgacgccttc tccaggtcaa agatcacgct
     1201 ttccatacat acatctcctc gggtgcaggt tcaaacactt tggcgtgctt gatatcgggc
     1261 aagtgcgcca gcgaccggaa ttccgatgcg atcgcgacgt agtcatcggt ctcggccaca
     1321 accgccggct tgcaggcaaa cggatcgcga atcaacgcca gttccgtcga tgtgcccatc
     1381 aggaaggtgt aaaaaccgtc gagctcttcg aaaccctttt gcagcgctac cggcaattca
     1441 tcgccttcgc gcagccgcca ttcgagaaaa cggcaggcgg cttcggtgtc gttgtcggta
     1501 tcgaagtgaa tgccttgggg ttcgagcatg cggcgcacgc catagggatt cgacagcgag
     1561 ccgttatgca ccaggcaaaa atcctcgcct gccgtgaacg ggtgcgcgcg atcaggtgtc
     1621 accgccgact ccgtggccat gcgtgtatgg ccgacaagat gcgaaccctt caggttcgcg
     1681 aagtcgtaac gcgccgccac ctgcgccggc gtgccgatgt ccttgtacaa atcgatggaa
     1741 cgtcccgtgg aaagcaggta caccaacgga aacgctgcgc gcagccacga cttcacgcct
     1801 tcagggtcgc cagccaaggt caggaccgcg tgattgcctt gcacgtccac ctgcgcgtcc
     1861 acattcatcg cgccgttcaa tgcagccgtc agccctttcc agtcgaaccg atcaccctcg
     1921 ggggtgaacc ccgaatacag gctgagtttt cgcttggccg catccagcgg ctggctgaac
     1981 accgccaggc ctgccgagtc cgggccgcgc tcggtcatgc cgatcagcat tggcaccatc
     2041 aatgccccaa gctgctcgcg cagtgccggc gttttcacca gcaatcctac gattccgcac
     2101 atcgtgcttc tcctcagaaa aattccagat agcttttcat ttcccaatcc gacacatgcc
     2161 gcatgtattc gagccactcc atccgcttga gcttgaggaa ttcatcggcg acaggaccca
     2221 gcgcgtcgca gatcagtctg tcgctttcaa gtgcgtccag cgcgtgctca aggttctgcg
     2281 gcaatacgcc gatgccatgt tccttcagct tggccggcga ccactcgtag aggttttcat
     2341 tggccggtgc accgggcgac aactcgcgtt ccacgccgtc gagacctgcc gcgatcaccg
     2401 cggccgtcgc cagatacgga ttgcacgcgc cgtccggcag gcgcagttca atgcgctcgc
     2461 ccggcacacg caccatggtc gagcggttgt tgtcgccgta gctgatatac gctggcgccc
     2521 aggtcgcgcc ggtcagcgaa cggccgacca ccagccgctt gtatgaattc acggtcgggt
     2581 tgcacagcgc ggtgagcgcc ggtgcgtggg ccagcaaacc tgctgtgaag tgatacgcca
     2641 gcttcgacaa gcccatgccc gacggatcgc ttttgtctga gaaaagattg ctcacgccat
     2701 cgccgatgga catgtgcatg tgcatgccgt tgcccggccg attcgcaaac ggcttgggca
     2761 tgaacgagca gatcaggccc atctcgttcg cgatctcgga ggccgccatc ttgaagaaca
     2821 cgtagtgatc gcaggaggtc aggcaatccg tgtacgtata gttgatctcg aact
//
LOCUS       DATGBK010001036         2012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_220823, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001036 DATGBK010000000
VERSION     DATGBK010001036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220823"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VKJ77_14465"
     CDS             complement(<1..198)
                     /locus_tag="VKJ77_14465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family peptidase"
                     /protein_id="HMC46520.1"
                     /translation="MKVHALIRVAACAVSLHAGLSLAASGASDAAPAAAPNAQPPYST
                     ASDQIRFGNAALFRNLIPSATL"
     gene            complement(195..1481)
                     /locus_tag="VKJ77_14470"
     CDS             complement(195..1481)
                     /locus_tag="VKJ77_14470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmpG family muropeptide MFS transporter"
                     /protein_id="HMC46521.1"
                     /translation="MSNSPHEAPALTAHEDHPGWRAFLNKRMLICVFIGFTSGLPLFT
                     LVYLVQAWLRTEGVNLKEIGLFALIQFPYTWKFIWAPLMDRYVPRLPGWRPGRRRGWM
                     IVTQVLVAVAIGALGFISPKDQIWTVAALTALVAFFGASQDIAIDAYRRELLADTEQG
                     LGNAVFVNAYKIAALVPGSLGLILADHLPWSTVFLVTAAFMLPGMVLTLVVKEPEVHG
                     TPPKNLRDAIVQPFREFIARDGWRTALLILGFIFLYKLGDTMATTLSTSFFLDIGFNK
                     TQIGVIAKTVAFWASLAGGIVGGVWLVKIGISRGLWIFGVLQIVSTLGFAWLAKIGPS
                     PVALAALYGFETFATGLTMAAFVAYIASTTDPRYTATQFALFTSLASVPRTLASASSG
                     FVVAQTGWFEYFMICAALSIPGMLLLPKIAPWRPVR"
     gene            complement(1536..>2012)
                     /gene="metW"
                     /locus_tag="VKJ77_14475"
     CDS             complement(1536..>2012)
                     /gene="metW"
                     /locus_tag="VKJ77_14475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011658215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HMC46522.1"
                     /translation="ELDVVGYGIEINDAGVLACAQKGVNVIQQNLEDGLRLFEDGSFD
                     FAILSQTLQTIHQTAAILRETVRVGRECIVSFPNFGYWRHRLTVLQGRMPVSKTLPYQ
                     WHNTPNVRVLTIRDFEALAPEVGIEILDRAVLHGGQSIRWGANWRGSLAVYRVKRS"
BASE COUNT          445 a          611 c          625 g          331 t
ORIGIN      
        1 caatgtcgcc gatggaatca ggttgcggaa caacgccgca ttgccgaacc ggatctggtc
       61 gctggccgtg gaatagggcg gttgtgcgtt gggcgcagca gccggcgctg cgtcggatgc
      121 cccggacgcc gccaagctca agccagcatg tagcgacaca gcgcaagcgg cgacgcggat
      181 cagggcgtgc accttcatcg gacaggtctc cagggcgcga ttttcggcaa cagtaacatg
      241 cccggaatag acagcgcagc gcagatcatg aagtactcaa accagcctgt ttgcgcgacc
      301 acaaagccac tcgatgccga cgcgagcgtg cgcggcaccg acgcaagact cgtaaaaagc
      361 gcgaattgcg tggcggtata acgcggatcg gtcgtgctcg cgatgtacgc cacgaacgcg
      421 gccatggtga ggccggtggc gaaggtttcg aacccgtaga gcgcggccag cgccacgggc
      481 gacggcccga ttttcgcaag ccacgcaaag cctagcgtgg aaacgatctg cagcacgcca
      541 aagatccaga gcccgcgcga aatgccgatt ttcacgagcc acacgccacc aacaatcccg
      601 cccgccaggc ttgcccagaa agcgacggtc ttcgcaatga cgccgatctg cgtcttgtta
      661 aagccgatat cgaggaaaaa cgacgtggag agcgtggtcg ccatcgtgtc gccgagcttg
      721 tagaggaaga tgaagccgag gatcagcaac gcagtgcgcc agccgtcccg ggcgataaat
      781 tcgcgaaacg gctggacaat ggcatcgcgt agattcttgg gcggcgtgcc atgcacttcg
      841 ggttccttga ccacgagcgt caacaccatg ccaggcagca tgaatgccgc cgtgacgagg
      901 aagacggtgg accacggcaa gtgatcggcg agaatcagcc cgagcgagcc gggcacaagc
      961 gcagcaatct tgtacgcgtt cacgaagacg gcgttgccga gtccctgctc ggtatcggcg
     1021 aggagttcgc gacggtacgc atcgatcgca atatcctggc ttgcgccgaa aaacgcgacg
     1081 agcgcggtca gcgcggcgac ggtccagatc tggtctttcg gcgatataaa cccaagcgcg
     1141 ccaatcgcca cggccaccag cacctgcgtg acgatcatcc agccgcgccg ccgtcctggc
     1201 cgccagcccg gcaggcgcgg cacgtagcgg tccatcagcg gcgcccagat gaatttccag
     1261 gtgtaaggaa actggatcag cgcgaacagg ccgatctctt tgaggttcac gccttcggtc
     1321 cgtaaccaag cctggaccag atagacgagc gtgaagagcg gcagccccga cgtgaagccg
     1381 ataaacacgc aaatcaacat gcgtttgttg agaaacgcgc gccagccggg gtggtcttcg
     1441 tgagcggtaa gagcgggcgc ctcgtgtggc gagttggaca tagggtcgat tcgaagcagt
     1501 aagcggtgcg cgagcgacga accggcaagc tcagttcagc ttcgctttac gcgatagacc
     1561 gcaaggctac cacgccagtt cgccccccaa cggatggact gcccaccgtg cagcaccgcg
     1621 cgatcgagga tctcgatccc cacttcgggc gcgagtgcct cgaaatcccg aatggtgaga
     1681 acccgcacgt tcggcgtgtt atgccattga tacggcagtg ttttcgacac gggcatgcgt
     1741 ccctgcaaca cggtcagccg atgccgccag taaccgaagt taggaaacga cacgatgcat
     1801 tcacgcccga cgcgcacggt ttcgcgcagg atcgcggccg tttgatggat cgtttgcagc
     1861 gtctgcgaca ggatcgcgaa gtcgaaactg ccgtcttcga acagccgtag tccgtcttcc
     1921 agattctgct ggatgacatt gacgcctttt tgagcgcagg cgagcacgcc ggcgtcgttg
     1981 atttcaatgc cgtagcccac cacatcgagt tc
//
LOCUS       DATGBK010001037         2639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313181, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001037 DATGBK010000000
VERSION     DATGBK010001037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313181"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..821)
                     /gene="msrA"
                     /locus_tag="VKJ77_14480"
     CDS             complement(81..821)
                     /gene="msrA"
                     /locus_tag="VKJ77_14480"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HMC46523.1"
                     /translation="MISTKQNPATFLRSRGAALLAAIGLGVGILFASMHPAHSSEAAV
                     VIAPPALDEPASGVHQETAVLAGGCFWGVQGVFQHVNGVMKVVSGYSGGQPQTAQYET
                     VSGGQTGHAESVQITYDPTKITYGKLLQIYFSVAHDPTELNRQGPDSGTQYRSAIFPA
                     NDMQKRVAQSYIAQLDKAHVFSSPIVTKTDALKGFYPAESYHQNYLTLHPDAPYIAIN
                     DMPKVENLKRLYPTLYRDKPVLLSVASQ"
     gene            complement(1174..2415)
                     /locus_tag="VKJ77_14485"
     CDS             complement(1174..2415)
                     /locus_tag="VKJ77_14485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013210947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HMC46524.1"
                     /translation="MTQSALASTLSDCVDHHFDQEVQFLCALVQKPSDNPPGDCADHA
                     EMAAQWLERIGFTVERHVVPADDVTRAGMISATNLVVRHRFGAGPVIALNAHGDVVPP
                     GDGWSADPYGAEIRDGFMIGRGAAVSKSDFATYAFALKALIESGATLGGTVELHLTYD
                     EETGGLIGPGWLLKQGIVKPDYAICAGFSYSITTAHNGAIHLEVTVRGKSAHAARPDT
                     GHDALEAATAVLNALYAHRAALREIHSETPGIDHPTLVVGLIKGGINTNVVPDKVSLR
                     LDRRVVPEENPQDVVKQLKSLIMASVEGLAGIGVEIQEVLVTSPLRSLDGAERLSQAL
                     QRAALVTLQRDIPTEGVPLYTDARLYCEAGVPTVIYGAGPRTLLEANGHRADERVALE
                     DLKVATKTVAIALADLLGQQP"
BASE COUNT          537 a          797 c          780 g          525 t
ORIGIN      
        1 ccttaaggac gctggtgacg ggcatcggat ctgaacccgc aagccgatag gctgcgggtc
       61 ctaagtccgc cgcttttcta ttactgcgat gccacgctca gcagcaccgg tttgtcgcga
      121 tacagcgtcg gataaaggcg cttcaggttc tcgaccttcg gcatgtcatt gatcgcgata
      181 tacggtgcgt ccggatggag cgtcaagtaa ttctggtgat aagactcggc aggataaaaa
      241 cccttgagag cgtctgtctt cgttacgatc ggcgaagaga aaacatgcgc cttgtcgagt
      301 tgcgcgatat agctttgcgc gacgcgtttt tgcatgtcgt tggccggaaa gattgccgaa
      361 cgatattgcg tcccgctgtc cgggccttgc cggtttaatt cggtcgggtc gtgagcgacc
      421 gagaaataga tctgcagcaa cttgccgtag gtgatcttcg tcggatcata agtgatctgc
      481 acggactcgg cgtgacccgt ctggcccccg ctgacggtct cgtattgcgc ggtctggggc
      541 tgaccgccgg agtagcccga cacaaccttc atcacgccgt ttacgtgctg gaacacgcct
      601 tgaacgcccc aaaaacaacc gcctgccagc acggcggttt cctggtgcac gccgctcgcg
      661 ggttcgtcga gcgcgggcgg ggcaatgacg accgcggctt ctgacgaatg cgctggatgc
      721 atggatgcga acaagatacc gacgcccagg ccgatagccg ccaacagcgc cgcgccgcgc
      781 gaacgcagga acgtggcagg attttgcttc gtggaaatca tggagagcct ccgggtttca
      841 ggacgacgcg gtgtacctga cgcccggcag tcaaacgccg ggcaggcgcc taagcgtcgt
      901 cctcttgcgt catgttagcg cgcccggaga cgtatggaag cttgatgaca aagatgtcat
      961 cgaaaggtca tggaaaggtc agggcgaggt gcgccaagga caatggcgcg cttgtctgcc
     1021 tattgcagat cgattgcata ttgcgtcggc agggacacga tgaacagtag cgcggctttt
     1081 aaagcgcgat aggtctttgg cctttatccg cgctaggtcg cgatgcggca tcattccctt
     1141 gctagccggc aaaggaacga tgcatagaca cgcttagggc tgttgcccaa gcaaatcggc
     1201 aagcgcgatc gcaactgttt tcgtcgcgac cttcaagtct tcaagcgcga cccgctcgtc
     1261 cgcccggtgt ccgttagcct caagcagcgt ccgcggaccg gcgccgtaaa tgacggtcgg
     1321 tacgcccgct tcgcaataca aacgggcatc ggtataaaga ggcacgcctt cggtaggaat
     1381 gtcgcgttgc aacgtaacca gggccgcgcg ttgcaacgct tgtgacaagc gctctgcgcc
     1441 gtcaagcgag cgcaacggcg acgtgaccaa cacctcttgt atctctacgc caatgccggc
     1501 caagccttcc accgacgcca tgatcagcga cttcaattgc ttgaccacgt cttgcggatt
     1561 ttcctccggc accacccgcc ggtcgagccg caaactcacc ttatcaggca ccacattcgt
     1621 gttgatgccg cctttgatca gacccaccac taaagttggg tgatcaatac ccggcgtctc
     1681 cgaatggatc tcgcgcaatg cggcccgatg cgcgtacagc gcattgagca ccgctgtcgc
     1741 ggcctccagc gcgtcatgcc cggtatcagg ccgcgccgcg tgcgccgact tgccccgcac
     1801 cgtgacttcc aggtggatcg cgccattgtg tgcggtcgta atcgaatagg aaaagcctgc
     1861 acagatggcg taatcgggct tcacgatgcc ctgcttcaac aaccaccctg gcccgatcag
     1921 gccacccgtt tcttcgtcat aggtcaggtg cagctccacc gtcccgccga gcgtcgcacc
     1981 actctcgatc aatgccttca acgcgaacgc ataggtggcg aagtccgatt tcgataccgc
     2041 tgcgccgcgc ccgatcatga aaccatcgcg gatctcggcg ccgtatggat cggcgctcca
     2101 gccatcgccg ggaggcacca cgtcgccgtg cgcgttcagc gcgatcaccg gccccgcgcc
     2161 gaagcgatga cgaaccacca ggttcgtcgc gctgatcatg ccggcgcgcg tgacatcgtc
     2221 ggccggcact acgtggcgtt cgaccgtgaa gccgatcctc tccagccatt gtgccgccat
     2281 ctccgcgtgg tccgcgcaat cgccaggcgg attgtccgac ggtttttgca cgagcgcgca
     2341 aaggaactgg acttcctggt caaagtggtg atcgacgcag tcggacaggg tcgaggctag
     2401 agcggattgg gtcatgggag tcggtctgat ctaagtaaga agctgaaaat aaatagctga
     2461 aagttggctg catggtaacg agtaacgcgg ctgcaggcga gctagcgtca gcttagcgga
     2521 cacggcccgc ggcctggtga gcgcacccga atgccgccca taacagatcg caatcaattt
     2581 attgcgctta agcgcggttt tcatcgaaga aaattgcatc gggactcaaa cgccgcgtt
//
LOCUS       DATGBK010001038         7389 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_127824, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001038 DATGBK010000000
VERSION     DATGBK010001038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 7389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7389
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127824"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..267)
                     /locus_tag="VKJ77_14490"
     CDS             complement(<1..267)
                     /locus_tag="VKJ77_14490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl transferase family protein"
                     /protein_id="HMC46525.1"
                     /translation="MANSWRTSVLASRHLALGSKLENWNGMGTAWTYGADLADQHEAI
                     RTKAGLMDVSGLKKLHVVGAHAEMLIDQITSRDVSRLYPGKSVYA"
     gene            444..1304
                     /gene="purU"
                     /locus_tag="VKJ77_14495"
     CDS             444..1304
                     /gene="purU"
                     /locus_tag="VKJ77_14495"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014896025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HMC46526.1"
                     /translation="MSLKRHFTLTLSCPDQIGIVAAVSDFLAQHHGWITESSNHADEE
                     NQRFFMRQEILADSFQLDLRGFRDAFAPIARRFGMDWRVADSAQKKRVVILVSKLEHC
                     LYDLLARWKAGELEVEIPCVISNHDTFRDLVEWHGITFHHVPVTLDNKADAYARVAGL
                     FDEAQADVMVLARYMQVLSPDMCRDYAGRIINIHHSFLPAFSGGKPYHQAYQRGVKLI
                     GATCHYVTEDLDEGPIIDQDVIRIDHSDSIPDLVRYGRDIEKTVLARGLRYHLEDRVL
                     THGNRTVVFR"
     gene            1301..2164
                     /gene="folD"
                     /locus_tag="VKJ77_14500"
     CDS             1301..2164
                     /gene="folD"
                     /locus_tag="VKJ77_14500"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008158220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HMC46527.1"
                     /translation="MSARVIDGRALATGLRVKYAESVAELARDGIVPGLAVIVVGSDS
                     ASHLYVRNKIRACDECGVRSFLHSLSTGATEAEVLDLIGKLNVDPSVHGILVQLPLPL
                     QIDVRRVLETIAVDKDVDGFHLYNVGALTVGESIFPPCTPYGVQLLIDQTGIEVEGKH
                     AVVVGASNIVGKPMALMLLQRLATVTICHAKTVDLAHHTISADVLVVAAGKPGLIVPQ
                     MVKQGAVVIDVGINKLADGRIVGDVDFEGVKDKASWITPVPGGVGPMTVTMLIRNTIR
                     SAQRLPAGSFD"
     gene            complement(2173..2868)
                     /locus_tag="VKJ77_14505"
     CDS             complement(2173..2868)
                     /locus_tag="VKJ77_14505"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC46528.1"
                     /translation="MNSTPAMPVSTAAFANAAISAPVRLVIVDDHALFRRGLRQLISA
                     DLELDVVAEASCGHEGIEAVLKHMPDVALIDLHMKDIDGATLVRAARSAGCTARFVML
                     TVSDNKADLDRAFDAGARGYLLKDMEPEELCARVKEAARGVDVVSDRVLAFPVGLSPA
                     EGRARHALWEDLTERERETLELVAQGASNKIVARALGIAESTVKVHVKHVLRKLSLKN
                     RFEAALWLRDQRR"
     gene            complement(2877..4325)
                     /locus_tag="VKJ77_14510"
     CDS             complement(2877..4325)
                     /locus_tag="VKJ77_14510"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC46529.1"
                     /translation="MTRPLPLVHSISYPLFARYVAWLSALAVLLAVGFGALFITGYRV
                     LVVIPRDALNQIDAIGVSARGPFDGASHEIARLAALLTSLASRCAGIESNSDYLERTL
                     VDQSRDSGRALDLLFRASTLFASSAPDEQALRSLLEELVDCVDAQCGALLIHDVAATE
                     LSLPAVLAARGTVRMPAGMTLHRLAQEQGVQRFDATPDGRPALLVMPIGDAVDRYGVL
                     ALEVTPKYVLERRQQRLLDTFASLLAVTIGNLLRSRRQRRVALMEERAAIARELHDSL
                     AQTLSFVKIQLARMQAQARQANFADGIDARDWEESLAELRLGVDSAYRNLRQLLSAFR
                     SSVGTGGLAQSLQVIVDDLSAVTRTSIELDCRVREIDLSPEEELHLLQIAREALSNVV
                     RHARANHARVSVSEKGGELTLSVLDDGEGFATDTSDATDPAGHYGLSIMRERSERLGG
                     RIEIGAANHPLAGAAAGSEVRLKFRPGSTVVP"
     gene            4461..6317
                     /locus_tag="VKJ77_14515"
     CDS             4461..6317
                     /locus_tag="VKJ77_14515"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HMC46530.1"
                     /translation="MTLFIFAVLLLCALSAMVLWPVLTLAALPLTGVALALVVAVAGG
                     IGVPALLLARRRPQRSAQHVSLAAEREVLASYIDHAFRPALLVSGNNVLRANLALLKE
                     LGMSGSGDDIIGMPFENIVHPRDQQRVPQILEQRDGHDEVLTLLRADGSSSRLHVSVF
                     PGAHPTLRMLQLSGTHADGERSMQPSNGTWPHKLAARLGDVLFALDDELAVAYISPAW
                     SMVAGAASANATGTPLLQLLHPEDRAAVTQALREAVRNSSAATPVEARVLNAQGPLCW
                     MEIRARALPPAADDSRPGAVIGVMIDVTQRKLNEESLRAQRRSLRTLVDNVPGMIYRG
                     HSDRRWSMEFISEGCLELTGYPPTALMGNGPVGFGDLIHPEDREYVWTSVQMRTGRGE
                     GFELTYKIIDRGGNVKWVAEIGRGIFSATGELLGLEGLITDFSSRQRVQEDARRRLIY
                     ESTTGLMNHSVLLDRLAFTFAHATANGYRFAVAYLCFGGPQSLAQEHGPADADRLMIE
                     LGKRLKVLHTDCNGIGRHDDAGFVCLLTDFTFGAGPQSTAAASPDESQVEQRLGRLLE
                     GIGMPVRLDHREFVLRMHWSLVWHDAGGHRLPAQMIEEAIDTTTAQLHALSG"
     gene            complement(6333..>7389)
                     /locus_tag="VKJ77_14520"
     CDS             complement(6333..>7389)
                     /locus_tag="VKJ77_14520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminomethyltransferase family protein"
                     /protein_id="HMC46531.1"
                     /translation="FIGYGAMAEYWACRERVAVMDLSALRKFDVTGPDAQALLQHVQT
                     RDMRKLAVGQVVYTAVCHPHGGMMDDATVFRLGVDNFRVVCGEDTTGLWLQEQAVALG
                     LKVFVRNVTDRLHNIALQGPASRDVLRDVLWTPPARSSAETLKWFRFTVGRIGGSEGV
                     PVIVSRTGYTGELGFELWCHPSDAMRVWDAVWEAGAPHGIAPLGMAALDMLRIEAGLA
                     FAGQEFCPMTDPFEAGIGFCVAIDQPSDFVGKEALAARALRPQKKLVGLIGEGAEALA
                     SGDIVYDGRAQIGQVTSATRSPLLDKQIALARVDVLYSEAGSRFEIGKLDGKLKRLPV
                     EVVSFPHYDPTKSRVRS"
BASE COUNT         1386 a         2408 c         2260 g         1335 t
ORIGIN      
        1 cgcgtagacg gacttgccgg gatacagcct ggacacgtcg cgcgacgtaa tctggtcgat
       61 cagcatctcg gcgtgggcac ccacgacatg caatttctta agtcccgata cgtccatcag
      121 gcccgctttc gtacgaatgg cttcgtgctg gtccgccaga tcggccccgt aggtccaggc
      181 ggtacccatg ccattccagt tctcgagctt cgagccaagc gcgagatgcc gcgacgccaa
      241 taccgacgtt ctccatgaat tcgccatcga tgctctccgt agtgttcacc tggttcagtt
      301 gcctctgtac acgacgatta gagcggcgcc aaaacacctc ggcaatgctc ccgacggagt
      361 accaccacgg tcggattggc gccggcaata tcggcaccga caatgcgggc tgtcatcccg
      421 gcaaccctct cccgcaaacc gtcatgagcc tgaaacgcca cttcacgttg acgctgtcct
      481 gtcccgacca gatcggcatc gtggccgccg tcagcgattt ccttgcgcaa catcacggct
      541 ggatcacgga atcgagcaat cacgcggatg aagaaaacca gcgcttcttc atgcgccagg
      601 agattctcgc ggactcgttc cagctcgacc tgcgcggctt tcgcgacgct ttcgcgccaa
      661 ttgcgcggcg cttcggcatg gactggcggg ttgccgacag cgcgcaaaaa aagcgtgtcg
      721 tgatcctcgt gtcgaagctc gaacactgcc tgtacgactt gctggcacgc tggaaggccg
      781 gtgaactgga agtcgagatt ccgtgcgtga tttcgaatca cgacaccttc cgcgatctgg
      841 tcgagtggca cggcataacg tttcaccacg tgcccgtcac gctcgacaac aaggccgacg
      901 catacgcccg ggttgcgggc ctgttcgacg aagcccaagc cgacgtcatg gtgctcgcgc
      961 gctacatgca ggtgttgtcg ccggacatgt gccgcgacta cgccgggcgc atcatcaaca
     1021 tccaccattc gttcctgccg gcgttctccg ggggcaagcc ctatcatcag gcgtaccagc
     1081 gcggcgtgaa actgatcggc gcgacctgcc actacgtgac cgaggacctg gacgaaggtc
     1141 cgatcatcga tcaggacgtg atccgtatcg accattccga ttcgatcccc gatctcgtgc
     1201 gctatggcag ggatatcgag aagacggtgc tggcacgcgg gctgcgctat cacctggaag
     1261 accgcgtgct gacccatggg aaccgcaccg tggtgtttcg atgagcgctc gcgtgatcga
     1321 cggccgtgcc ctcgccaccg gcctgcgcgt gaaatacgcc gagagcgtcg cggaactggc
     1381 gcgagatggc atcgtgccgg ggctggcggt gatcgtagtc ggcagcgact cggcgtcgca
     1441 tctttatgtg aggaacaaga tccgggcctg cgacgagtgc ggcgtgaggt cttttctcca
     1501 ttcgttatcc accggtgcga ccgaggcaga ggttctcgat ctgatcggca agctgaacgt
     1561 agacccctcg gtgcatggca tcctggtgca actgccattg ccgctgcaga tcgatgtcag
     1621 gcgggtgctg gagacaatcg ccgtggacaa ggacgtcgac ggtttccatc tctacaacgt
     1681 cggcgcgctg acggttggcg agtcgatctt tccgccttgc acgccctacg gggtgcagtt
     1741 gctgatcgac cagacgggca tcgaggtaga gggcaagcat gcagtggtgg tgggcgccag
     1801 caatatcgtc ggcaagccga tggcgctcat gttgttgcag cgccttgcca ccgtgaccat
     1861 ctgccatgct aagactgtgg atctcgcgca tcacaccatt tcggccgatg tgctcgtcgt
     1921 cgccgctggc aagccaggcc tgatcgtgcc gcagatggtg aagcagggag ccgtggtgat
     1981 cgacgtcggc atcaacaagc tggccgatgg caggatagtc ggcgacgtgg acttcgaagg
     2041 cgtgaaggac aaggcatcgt ggatcacacc ggtacccggt ggcgtcgggc cgatgacggt
     2101 aaccatgttg atcaggaata cgatccgttc ggcgcaaaga ctgccggccg gatcgttcga
     2161 ctgacctgcg ccctaccgtc tctgatcccg cagccacagc gcggcttcga agcggttctt
     2221 gagcgagagc ttcctgagca catgcttcac gtgcaccttg accgtgctct ccgcaatgcc
     2281 gagcgcgcgc gcgacgatct tgttggacgc gccttgagcc acgagctcca gggtctcgcg
     2341 ctcacgctcg gtcagatctt cccagagcgc gtgccgcgcg cgcccttcgg ccggcgaaag
     2401 ccccacagga aaagccagca cccggtccga gacgacatcg acgccgcgcg cggcttcctt
     2461 gaccctcgcg catagttcct ctggttccat gtccttcagc agataaccgc gtgcgccggc
     2521 gtcgaaggcg cgatccagat cggccttgtt atcggatacc gtcaacatca caaagcgcgc
     2581 cgtgcaacct gcggaacgcg cagccctgac cagggtcgcc ccgtcgatgt ccttcatgtg
     2641 caggtcgatc agtgcgacat cgggcatatg tttcagcacg gcctctattc cttcgtgccc
     2701 acaggacgcc tcggccacca cgtcgagttc gaggtcggct gaaataagct gcctgaggcc
     2761 gcgccggaac agcgcgtgat cgtcgacgat gacaagccgc accggagcgg agatcgccgc
     2821 gttggcaaag gcggcagtgg aaacgggcat ggcaggtgtg ctgttcacat tcagcctcat
     2881 gggaccacgg ttgacccggg cctgaatttc agtcgtactt cggaaccggc agctgcgccg
     2941 gccaggggat ggttcgcggc gccgatctcg atccggccac ccagtcgttc gctgcgctca
     3001 cgcatgatgc tcaggccgta gtgacctgcc ggatcggtgg cgtcggaggt gtcggtggcg
     3061 aaaccctcgc catcgtcgag caccgacaac gtcagttcgc cgcccttctc gctgacactg
     3121 acacgcgcat gattggcgcg cgcatgccgc accacgttac tcagcgcctc gcgggcgatc
     3181 tgcagcagat gcaactcctc ttcgggcgac aagtcgatct cgcgcacgcg gcaatcgagt
     3241 tcgatacttg tacgcgtgac ggcggacagg tcgtcgacaa ttacctgcaa cgactgcgca
     3301 agcccacccg tcccgacact gctgcgaaac gcgctcagca actgccgcaa attgcgatac
     3361 gcgctatcca cgccaaggcg caactcggct agcgactcct cccagtcgcg cgcatcgatc
     3421 ccgtcagcga aatttgcctg acgggcctgt gcctgcattc gggccaactg gatcttgacg
     3481 aatgaaagcg tttgcgcaag cgagtcatgc agttcgcgtg ctattgccgc ccgctcttcc
     3541 atcagcgcca cccgccgctg gcgccggctg cgcagcaagt taccgatggt caccgccagc
     3601 aggctcgcga aggtgtcgag cagacgttgc tggcgccgct cgagcacata cttcggcgtc
     3661 acttcgagcg cgagtacgcc gtaacggtcg accgcgtcgc caatcggcat cacgagcagt
     3721 gccggccggc cgtccggcgt ggcgtcaaag cgctgcacgc cctgctcttg cgccagccgg
     3781 tgcaaggtca tgccggctgg catccgcacg gttccacgcg ccgccagcac tgccggcaag
     3841 gacagttcgg tcgcggccac gtcgtggatc agcagcgcgc cgcactgtgc atccacgcag
     3901 tcgaccagtt cttcgagcaa actgcgcaac gcctgttcat cgggcgcgga ggaggcaaag
     3961 agggtactgg cccgaaacag caggtcgagc gcgcggcccg agtctctcga ttgatcgacg
     4021 agcgtgcgct ccaggtaatc gctgttggac tcgatgccgg cgcagcgcga cgccagcgag
     4081 gtcaggagag cagcaaggcg agcgatctca tgcgacgcac catcaaaggg accgcgcgca
     4141 ctaacgccga tagcgtcgat ctggttcagt gcatcgcgag gaatgacgac gagcacccgg
     4201 tagcccgtga taaacagcgc gccgaaaccg acagccagca agacagcgag cgcggataac
     4261 catgccacgt accgcgcgaa caacgggtaa ctgatcgagt gaacgagcgg caaaggtcgc
     4321 gtcacgggtc tccttcgtaa tggcgccgcg ggcagcgggc gttttgatat ccggagcttc
     4381 aacgataacc aagcaacttc tggaccaaat tgtgcttggt ttcttcgatt caacttacct
     4441 gccagggcgg tttttccccg atgacgctgt tcatcttcgc cgtactgctg ctttgcgcgt
     4501 tgagcgccat ggtgttgtgg ccggttctca ccctcgccgc gttgccactg acgggcgttg
     4561 cactggcgct ggtcgtggcg gtagcgggcg gcatcggcgt acctgcactc ttgctcgcgc
     4621 gcaggcggcc gcaacgcagc gcccagcacg tgtcgcttgc cgccgagcgc gaagtgctgg
     4681 cgagctacat tgatcatgcg ttccgtcccg ccttgctcgt gtccggcaac aacgtgttgc
     4741 gggccaacct cgcattgctg aaagagttgg gcatgagcgg ttccggcgac gacatcattg
     4801 gcatgccctt cgagaacatc gtccatcctc gcgatcagca gcgcgtgccg cagatcctcg
     4861 aacagcgtga cggccacgac gaagtcctaa ccttgctgcg cgctgacggc tcctcgagca
     4921 ggctccacgt cagtgtgttt cccggtgcac atcccacgct gcgcatgctg caactgagcg
     4981 gcacgcacgc agacggcgag cgctcgatgc agccgtccaa cggcacgtgg ccgcacaagc
     5041 tcgccgcgcg ccttggcgac gtgcttttcg cactcgacga cgagctggcc gtggcctaca
     5101 tcagccccgc ctggtcgatg gtggcgggtg cggcctcggc taacgcgacc ggcacgccgc
     5161 tgctgcagtt gttgcatcct gaagaccgcg ctgcggtgac ccaggccttg cgcgaagccg
     5221 tgcgaaacag cagcgccgcc acgccggtcg aagcgcgcgt tctgaacgca caaggaccgc
     5281 tgtgctggat ggagattcgt gctcgcgcgc ttccccctgc ggccgacgat tcacggccag
     5341 gcgccgtgat cggcgtgatg atcgacgtca cgcagagaaa gctcaacgaa gaaagcttgc
     5401 gcgcgcaacg gcgtagcctg cgcacgctgg tggacaacgt gccgggcatg atctatcgag
     5461 gccacagtga ccggcgctgg tcgatggagt tcatcagcga aggttgcctc gaactcaccg
     5521 gctatccccc caccgcgcta atgggaaacg gcccggtggg cttcggcgac ctgattcatc
     5581 ccgaagaccg cgaatacgta tggaccagcg tacagatgcg caccggacgc ggggaagggt
     5641 tcgagctgac ctacaagatc atcgaccgcg gcggcaacgt caagtgggtc gccgaaatcg
     5701 gccgaggcat cttttcggcg accggtgaac tgctcggcct cgaagggttg atcaccgact
     5761 tcagctcgcg ccagcgcgtg caggaagatg cgcgccggcg cctgatctac gagtcgacga
     5821 ccggcctgat gaaccacagc gtgctgctcg accggctcgc cttcacgttc gcgcatgcca
     5881 ccgcgaacgg ttaccggttc gcggtggcct acctgtgctt cggcggtccg cagtcgctcg
     5941 cgcaggaaca cggcccagcc gatgccgacc gcctgatgat cgaactcggc aagcggctga
     6001 aagtgctgca tacagactgc aatggtatag gccgtcacga cgatgcgggc tttgtatgcc
     6061 tgctgacgga tttcaccttc ggcgcggggc cgcaatcaac cgctgcggca agcccggacg
     6121 agagccaggt cgagcagcgg ctgggccgat tgctcgaggg aatcggcatg ccggtccggc
     6181 tggaccatcg cgagttcgtg ttgcggatgc actggtcgct ggtatggcat gacgccggcg
     6241 ggcatcgcct acccgctcag atgatagaag aagcgatcga tacgactact gcgcaactcc
     6301 acgcactgag cggataagcc ctgcctcccc cgctagcttc tcacgcggct cttggtcggg
     6361 tcgtagtgcg gaaaagacac cacttctacg ggcagccgct tgagctttcc atcgagcttg
     6421 ccgatctcga agcgcgagcc tgcctccgaa tacaggacat cgacgcgtgc gagcgcgatc
     6481 tgcttgtcga gcagcggtga gcgcgttgca ctggtcacct gcccgatctg cgcccggccg
     6541 tcgtagacga tatcgccact ggcgagcgcc tcagctccct caccgatcag accgaccagc
     6601 tttttctgcg gcctgagggc gcgcgccgca agcgcctcct tgccgacaaa atccgaaggc
     6661 tggtcgattg ccacgcaaaa gccgatccct gcttcgaagg gatcggtcat tggacaaaac
     6721 tcctgccccg caaaagccaa gcccgcttcg atgcgaagca tatcgagtgc ggccatgccc
     6781 aacggcgcga tgccgtgagg ggcgcccgct tcccagaccg catcccagac ccgcatggcg
     6841 tcggacggat gacaccataa ttcgaacccc agctctccgg tgtaacccgt tcgggacacg
     6901 attacgggta caccttcaga accaccgatg cgtcccacgg taaaccggaa ccacttcagc
     6961 gtttctgcgc tgctgcgcgc aggcggcgtc cacaagacat ccctaagtac gtcgcggctt
     7021 gccggacctt gcagtgcaat gttatgcagg cgatcggtca cgttgcgcac gaacaccttg
     7081 agcccgagtg ccaccgcctg ttcctgcagc cagagcccgg tcgtgtcttc gccgcagacg
     7141 acgcggaaat tgtccacgcc cagccggaat accgtggcgt cgtccatcat tccgccatgc
     7201 gggtgacaca ccgctgtgta cacgacctgt ccaaccgcga gcttgcgcat gtcgcgtgtc
     7261 tgtacgtgct ggagcaaggc ctgcgcatcg ggaccggtca cgtcgaactt gcgcagagcc
     7321 gacaggtcca tcaccgcgac gcgttcacgg catgcccagt actccgccat cgcaccatag
     7381 ccgatgaac
//
LOCUS       DATGBK010001039         3395 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_150678, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001039 DATGBK010000000
VERSION     DATGBK010001039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3395
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150678"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1081
                     /gene="glnA"
                     /locus_tag="VKJ77_14525"
     CDS             <1..1081
                     /gene="glnA"
                     /locus_tag="VKJ77_14525"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012417599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HMC46532.1"
                     /translation="KKAEAMVKSMGVGDTVFFGPEAEFFVFDDVRYQTTPYNTGFKLD
                     SSELPINSDTEYEGGNLGHRIRTKAGYFPVPPQDSVQDMRSEMLGAMAKMGVKVEKHH
                     HEVASAQHELGMKFDTLTLMADQMQIYKYCIHQVAHIYGKTATFMPKPVFGDNGSGMH
                     VHQSIWKDGKPTFAGNKYADLSETCLHYIGGIIKHAKAINAFTNPSTNSYKRLVPGYE
                     APVLLAYSARNRSASCRIPYTTSPKAKRVEVRFPDPMANPYLAFAAMLMAGLDGIKNK
                     IDPGPAMDKDLYDLPREELKQIPTVCGSLREALESVDKDRAFLKAGGVFDDDFINSFI
                     ELKMEEVARFEMTPHPVEFEMYYSL"
     gene            1386..2450
                     /locus_tag="VKJ77_14530"
     CDS             1386..2450
                     /locus_tag="VKJ77_14530"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HMC46533.1"
                     /translation="MGGIGIVAFGAFLALAWYSAATLFLLFAGILFGVFLNAMTDLLR
                     HVIGGNHTLRLIIVCLLFTGVLSGVVILGGTTIAQQVTALSSTIRSQIGHVKGYLEEH
                     GVDTSFLNVGNSTAAPNAEGAAPQPQSRGPKLPDAGALASGTGAIVSQTFRIISGLFE
                     GVGNFFVVIFLGLLLAAQPGIYRDGILRFVPRQHAHDAKELIDDIGETLRRWLLGQMA
                     TMSSLFILTWIGLSIIGVPGALVLGFLTGLLTFIPNVGAILAGFLIVLASLGSGWTAI
                     ISAFGLYLAVQFMEGNVLTPLIQRHAISIPPATLFAAQIFLGVLFGLWGLALALPLIA
                     VIKVVLNHVWPDQTATAGAA"
     gene            complement(2472..2768)
                     /locus_tag="VKJ77_14535"
     CDS             complement(2472..2768)
                     /locus_tag="VKJ77_14535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010395645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase family
                     protein"
                     /protein_id="HMC46534.1"
                     /translation="MITEIAQLEIKPGSEADFEAAVAKARAAFGRSKGFHGFELHRSI
                     ENPQRYRLMVKWETLENHTVDFRGSENFAEWRGLVGPFFASPPEVEHTNTVLAS"
     gene            complement(2968..3204)
                     /locus_tag="VKJ77_14540"
     CDS             complement(2968..3204)
                     /locus_tag="VKJ77_14540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46535.1"
                     /translation="MVTIRNDARHSALLALEAAAASARGGFACMFSSSDEYETALITE
                     RRAQGRYTQPTRSWRIMAFAAVALIVAGTVVFLG"
BASE COUNT          662 a         1092 c         1011 g          630 t
ORIGIN      
        1 gaagaaggcc gaggccatgg tcaagtcgat gggcgtcggc gataccgtgt tcttcggacc
       61 ggaagccgag ttcttcgtat tcgacgacgt gcgctaccag accacgccct acaacaccgg
      121 cttcaagctg gattcgtcgg aactgccgat caattccgac accgaatatg agggcggcaa
      181 tctcggccac cgcatccgca ccaaggccgg ctacttcccg gttccgccgc aggattcggt
      241 gcaggacatg cgctcggaaa tgctcggcgc gatggccaag atgggcgtca aggtcgagaa
      301 gcatcaccac gaagtcgcct ccgcccagca cgaactcggc atgaagttcg acacgctgac
      361 gctgatggcc gaccagatgc agatctacaa atattgcatc caccaggtcg cgcacatcta
      421 cggcaagacc gccaccttca tgccgaagcc ggtcttcggc gacaacggct cgggcatgca
      481 cgtccaccag tcgatctgga aagacggcaa gccgaccttc gccggcaaca agtatgccga
      541 cctgtcggaa acctgcctgc actacatcgg cggtatcatc aagcatgcca aggccatcaa
      601 cgctttcacc aacccgtcga ccaactccta caagcgtctg gtcccgggtt acgaagcgcc
      661 ggtgctgctc gcctattcgg cgcgcaaccg ctcggcctcc tgccgcatcc cctacacgac
      721 ttcgccgaag gcgaagcgcg tggaagtccg cttcccggat ccgatggcga atccgtatct
      781 cgccttcgcg gcgatgctga tggccggcct cgacggcatc aagaacaaga tcgacccggg
      841 cccggcgatg gacaaggacc tctacgacct gccgcgcgag gaactgaagc agatcccgac
      901 ggtttgcggc agcctgcgcg aagcactcga gagcgtggac aaggatcgcg cgttcctgaa
      961 ggctggcggc gtgttcgacg acgacttcat caactccttc atcgaactga agatggaaga
     1021 agtcgcacgt ttcgaaatga cgccgcatcc ggtcgagttc gagatgtact actcgctctg
     1081 atccacggat cattcggcat cgtcaaaaag gcgccctcgc gggcgccttt ttcagttccg
     1141 agagcgtttc gagcgaagcg gataccggtt cgcgtgaaga aaacgcgtca catcgatgcg
     1201 acggccctgc ggcctgcggg gaaacaaacg cagcgccaga tagttgacgc ggtccccgtc
     1261 aggatcggtg cttgatcccg gctccgtttg acggaagagt gcagcggatt gaatcggagg
     1321 cttcgcgctt ggacggatca gttgaaggcg gaacccgcga gcgcaggctg gcgtggcaaa
     1381 tcgcgatggg cggcatcggc attgtcgcat tcggagcgtt tctggccctc gcctggtatt
     1441 ccgccgcgac gctgttcctg ctgttcgccg gtatcctgtt cggcgtgttc ctcaacgcca
     1501 tgaccgatct gctgcgacac gtgatcggcg gcaatcatac gctgcggctc atcatcgtct
     1561 gcctgctctt taccggcgtc ctgtcgggcg tcgtcatcct gggcggcacc acgatcgcgc
     1621 agcaggtgac ggcgctgagt tcgacgatcc gttcgcagat cgggcacgtc aaagggtatc
     1681 tcgaggaaca cggggtcgac accagcttcc tgaacgtcgg caattcgacc gccgctccga
     1741 atgccgaggg agccgcgcca caaccgcaat cacgcggacc gaaactgccc gacgcaggcg
     1801 cgctcgcttc cggcaccggc gcgatcgtca gccagacttt ccgcatcatc tccggcctgt
     1861 tcgaaggcgt cggcaatttc ttcgtcgtga tctttctcgg actgttgctg gcggcgcagc
     1921 cgggaatcta tcgcgacggc atccttcgct tcgtgccacg gcagcatgcg catgacgcga
     1981 aagaactgat cgacgatatc ggagagaccc tgcgccgctg gctgctcggc cagatggcga
     2041 ccatgtcgag cctgttcatc ctgacatgga tcggcttgag catcatcggg gtgcccggcg
     2101 cactggtgct gggcttcctc accggcctgc tgacattcat tccgaacgtc ggcgcgatcc
     2161 tcgccggctt cctgatcgtg ctcgcgagcc tgggctcggg ctggaccgcg atcatcagcg
     2221 ccttcgggct ttatcttgcc gttcaattca tggaaggcaa cgtgctgacg ccgctgatcc
     2281 agcgccacgc catcagcatt ccgccggcga cgctgttcgc ggcgcagatc tttctcggcg
     2341 tactgttcgg cctgtgggga ctggcgctgg cgctgccgct gatcgcggtc atcaaggtgg
     2401 tgctgaacca cgtgtggccg gatcagacgg caaccgcggg cgcagcttag cgcgccccga
     2461 aaacgcggcg gtcagctcgc cagcaccgta ttggtgtgct cgacttccgg gggcgacgcg
     2521 aagaacggac cgaccagtcc gcgccactcg gcgaaattct ccgatccgcg gaagtccacc
     2581 gtgtggtttt ccagcgtttc ccatttcacc atcagccgat agcgctgcgg attttcgatc
     2641 gaacgatgca gctcgaagcc atgaaacccc ttcgaacggc cgaaggcggc acgcgccttg
     2701 gcaacggcgg cttcgaagtc ggcttcagag cctggtttga tttcaagctg ggcgatttcg
     2761 gtgatcatat cggcttggcc ttccgctaaa gcgttttcgc gcgaagtgga taccggttcg
     2821 cgtgaagaaa acgcgttaaa tcaaaaatga tggagccccg gtcttgattc cgtcaaaacc
     2881 ggaacaaccc tcgcgaggcc aatggctcta tcgcatatcg cgtgaggatt gaaggtggca
     2941 acggcagtgc ggtgtactcg cgccgtctca gcccaggaaa accaccgttc cggccactat
     3001 cagcgcaacg gcggcaaatg ccatgatccg ccagctgcgg gtcggctggg tatagcgccc
     3061 ctgtgcacgc cgttccgtga tcagcgcggt ctcgtattcg tccgacgagg agaacatgca
     3121 ggcaaagcct ccgcgcgcag acgcggccgc cgcttccagc gccagcaagg cagaatgacg
     3181 agcatcgttt cggatcgtga ccatatccga atcatatcga tggaatggta aacagacggt
     3241 aacccgtcag gcacgaaccc cgccgagcgg cgcaacgcga cgcaccacgc cggcagccgc
     3301 aaccggccgc cccgctttgg cgatcacctt gcgttccttc accagcgata ccggctcctc
     3361 cgatgcagaa gcgacacgat ttcggccgcc ccgct
//
LOCUS       DATGBK010001040         2956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_267033, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001040 DATGBK010000000
VERSION     DATGBK010001040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2956
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267033"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..520
                     /gene="mraZ"
                     /locus_tag="VKJ77_14545"
     CDS             92..520
                     /gene="mraZ"
                     /locus_tag="VKJ77_14545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0051302 - regulation of cell division
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HMC46536.1"
                     /translation="MFQGASALSLDAKGRMSVPSRYREALQGQAEGRVTLTKSPDGCL
                     LLFPRPEWEIFRSKIAELPMNAIWVRRIYLGNAMDVELDSAGRVLVSPELRAAASLAK
                     EVTLLGMGNYLEVWDAVTYTEKEKAAMAQGMPDALQNFTF"
     gene            537..1502
                     /gene="rsmH"
                     /locus_tag="VKJ77_14550"
     CDS             537..1502
                     /gene="rsmH"
                     /locus_tag="VKJ77_14550"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HMC46537.1"
                     /translation="MSPAMKNELQHRTVLLDEAVDALVTRVDGTYIDGTFGRGGHSRL
                     ILTKLGEAGRLIGFDKDPLAIATAAQIQDSRFSVVHESFASLADAAAERGVGKVSGVL
                     LDLGVSSPQVDDPDRGFSFRADGPLDMRMDPSRGESAAEWLARATVQELTEVIKDYGE
                     ERFAFQIAKALVARRAESDRLGPLVSTGELAQIVGHVVKTREKGKDPATRTFQAIRIH
                     INQELAELQVVLDAALGLLEQGGRLVVISFHSLEDRIVKRFMQAHASGPAIDRRLPIR
                     AADLPSPPLKLIGRVFASDAEVAANPRARSAVMRIAERVTARAAP"
     gene            1499..1843
                     /gene="ftsL"
                     /locus_tag="VKJ77_14555"
     CDS             1499..1843
                     /gene="ftsL"
                     /locus_tag="VKJ77_14555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HMC46538.1"
                     /translation="MNRLNIFLLIVVLGCALSAVSASNKQRQIFINVQRAQSEERQLQ
                     QDFSQLQYQQSALSKTSRIEQLATTSLKMQPVTTGRTQYLNYDPATSKATDAPLPAPV
                     PASAPPARGVKR"
     gene            1840..>2956
                     /locus_tag="VKJ77_14560"
     CDS             1840..>2956
                     /locus_tag="VKJ77_14560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HMC46539.1"
                     /translation="MKTSPKKNKGVAFTPNPILSVRLPMWRSKLVVFMLFMAFVALAG
                     RAFWIQGPGNAFFKKQGESRYQRTLEMPATRGQIKDRNGLVLATSLPVKAIWAIPEAV
                     PDDLGADKLGELATLLDMSPKELRAKLSMDKTFVYVKRQVPIEVAQKVAALDIPGIYS
                     RGEYKRFYPEGEITAHLIGFTNIEDKGQEGVELGDQGVLAGTPGMRRVIKDRMGHIVE
                     DVDEQVVPHNGDDVELSIDSKIQYIAYTNLKAAVEKFKAKAGAAIVIDVKTGEVLALV
                     NYPTYNPNDRSRMTGEQLRNRIMTDTFEPGSIMKPFTISLALDLHRVTPNTLVDTGNG
                     SFVLDGARITDDSGFGVLTVGGVIQKSSNIGATKIAMQ"
BASE COUNT          615 a          825 c          941 g          575 t
ORIGIN      
        1 aaagtgtatt tttgtgtgat tcagagcgca ttttcaggca tattccaaca aagaagtgac
       61 gcgccgccat ggcgcgaaga ggagagggcg agtgttccaa ggggcttcgg cgctatcgct
      121 cgatgcgaaa ggacggatgt ccgtcccgtc tcgctatcgg gaagcgctgc aagggcaggc
      181 agaaggccgg gtcacgctca caaagagccc ggatggatgc ctgttgctgt ttcctcgccc
      241 tgagtgggaa atctttcgct cgaaaatcgc tgaactccct atgaatgcaa tctgggttcg
      301 ccggatttat ctgggcaacg ctatggatgt tgaactcgat agcgccggac gggtactggt
      361 gtcgcccgaa ttgcgcgcgg cggcgtcgct ggctaaagaa gtgacgctgc tcggcatggg
      421 caactacctg gaagtatggg acgcggtgac ttacaccgag aaggaaaaag cggcaatggc
      481 gcaaggcatg cccgacgcgc tgcagaattt tacgttttga cgcggcgcta aagaacatga
      541 gccctgcgat gaaaaacgaa ttgcagcatc gcacggtgct gctggatgaa gcggtagatg
      601 cgctggtcac gcgtgtagac ggtacttata tagatggcac gttcggacgc ggcggccata
      661 gccgtctgat cctgacgaag ctgggtgaag ctggccgcct gatcgggttc gacaaagacc
      721 cgttggctat tgctacagcg gcacagattc aggattcgag attttccgta gtacatgaga
      781 gtttcgcctc gttagccgat gccgctgccg agcgaggagt tgggaaagtg tcgggtgtgt
      841 tgctggatct gggggtgtcg tcgccgcaag tggacgatcc ggatcgcggc ttcagcttca
      901 gggccgatgg cccgctcgac atgcggatgg acccgagccg tggcgaatct gctgcggaat
      961 ggctggcgcg ggcaacggtg caggaactga cggaggtgat taaagattat ggggaagaac
     1021 ggtttgcttt tcagattgca aaggcgcttg ttgctcgccg ggcagagtcc gaccgtcttg
     1081 ggcctctcgt cagcacgggc gagcttgccc aaatcgtggg tcacgtcgtc aaaacccgtg
     1141 agaagggcaa ggacccggca actcgcacct ttcaggctat acggattcac atcaatcaag
     1201 agcttgcgga gctgcaagta gttctggacg cagcattggg gttgttggag caaggggggc
     1261 gcctcgtcgt gatcagcttt cattcgctcg aggaccggat cgtcaaacgt ttcatgcagg
     1321 cccatgcaag cgggcctgcg atcgaccgcc gcctgccgat tcgcgccgcc gatctgccca
     1381 gtccaccgct caagctgatt ggccgtgtgt ttgcgtctga cgcggaagtc gcggcgaacc
     1441 cgcgcgcacg ttccgccgtc atgcggattg ccgagcgcgt caccgcgcgg gcggcgccat
     1501 gaaccgtctc aacatcttcc tgctgatcgt cgtgctcggt tgcgcgctgt cggcggtgag
     1561 cgcctcgaac aagcaaaggc agattttcat caatgtgcaa agggcgcagt cggaagagcg
     1621 tcagttgcag caggattttt cgcagcttca atatcagcag agcgcgttgt cgaaaacgtc
     1681 gcgcatcgag cagttggcta ctacgtccct gaagatgcag cccgtcacca cgggccgcac
     1741 gcaatatctg aactatgacc cggcgacgtc gaaggcaacg gacgcgccgt tgcctgcgcc
     1801 cgttccggcg tcggctcctc ccgcacgcgg ggtgaaacga tgaaaacgtc gccaaagaaa
     1861 aacaagggcg tcgccttcac gcccaatccc attctctctg tgcgcctccc catgtggcgc
     1921 tcgaagctcg tcgtcttcat gctgttcatg gcattcgtcg cgctcgcggg gcgtgctttc
     1981 tggatccagg gcccgggcaa cgccttcttc aagaagcagg gtgaaagccg ctatcagcgc
     2041 acgctcgaaa tgccggccac gcgcggtcag atcaaggacc gcaacggcct cgtgcttgcg
     2101 accagcttgc cggtgaaggc aatctgggca atccccgaag ccgttccaga cgatctcggc
     2161 gccgacaagc tcggcgagct cgccacgctg ctcgatatgt cgccgaagga attgcgcgcg
     2221 aagctctcca tggacaagac ctttgtctac gtgaagcgcc aagtgccgat cgaggtcgcg
     2281 cagaaagttg cggccctcga catccccggt atttattcgc ggggtgaata caagcgcttc
     2341 tatccggaag gcgagatcac ggcgcatctg atcggcttta ctaatattga agacaagggt
     2401 caggaaggcg tcgaactcgg cgatcagggt gttctcgccg gtacgccagg catgcgtcgc
     2461 gtgatcaagg accggatggg gcacatcgtc gaggacgtgg acgagcaagt cgtgccgcat
     2521 aacggtgacg acgtggagtt gtcgatcgat agcaagatcc agtacatcgc gtacacgaac
     2581 ctgaaagcag ccgtggagaa gttcaaggcg aaggcggggg cggcgatcgt gatcgacgta
     2641 aagaccggtg aagtgctggc gctcgtcaat tacccgacct acaacccgaa cgaccgctcg
     2701 cgcatgaccg gcgagcagtt gcgcaaccgg atcatgacgg acacgttcga gccgggctcg
     2761 atcatgaagc cgttcacgat ttcgctggcg ctcgatctgc atcgcgtcac gccgaacacg
     2821 ctcgtggata ccggcaacgg ttcgttcgtg ctcgacggcg cgcgtatcac cgacgactcg
     2881 gggttcggcg tgctgaccgt gggcggcgtg atccagaagt cgagcaacat tggagccacc
     2941 aagatcgcga tgcagt
//
LOCUS       DATGBK010001041         3136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313240, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001041 DATGBK010000000
VERSION     DATGBK010001041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313240"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            317..451
                     /gene="rpmH"
                     /locus_tag="VKJ77_14565"
     CDS             317..451
                     /gene="rpmH"
                     /locus_tag="VKJ77_14565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003816025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HMC46540.1"
                     /translation="MKRTYQPSVTRRKRTHGFRVRMKTAGGRKVINARRAKGRKRLAV
                     "
     gene            505..996
                     /gene="rnpA"
                     /locus_tag="VKJ77_14570"
     CDS             505..996
                     /gene="rnpA"
                     /locus_tag="VKJ77_14570"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HMC46541.1"
                     /translation="MRSTTSSGPETSQLRARAAFPKAARLLKTDEYSSVFRLRPWRRS
                     AHFVLYGKPTGNEARLGLVIGKKFAPRAVTRNLIKRLAREAFRLRRAELGGWDILLRL
                     HAKIDRKAMPSAKSPPLRTLFREEIDGLLDRAVREAARRTEGMGEQGASPIVNDPPAP
                     AGS"
     gene            1066..1275
                     /gene="yidD"
                     /locus_tag="VKJ77_14575"
                     /pseudo
     CDS             1066..1275
                     /gene="yidD"
                     /locus_tag="VKJ77_14575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004198815.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
     gene            1458..3134
                     /gene="yidC"
                     /locus_tag="VKJ77_14580"
     CDS             1458..3134
                     /gene="yidC"
                     /locus_tag="VKJ77_14580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HMC46542.1"
                     /translation="MDIKRTVLWVIFFMSAVMLFDNWQRDHGRPSMFFPSAVPTKTVG
                     SAAPGTTTPGTQAADLPSTPGVPGAPVAPGSNAPASSAADQLVNFSTDVYSGQIDTRG
                     GTLSKLSLVKEGDGKQPDLYITLFDHTATHTYLARTGLLGGDFPNHNDVFTLVPGGQT
                     SMGDGNTLSISFESPVKGGVKVIKTYTFTRGSYVIGVDTKVQNVGTAPVTPRLYMELV
                     RDDSPVETPRFSHTFIGPAVYTEQHHFQKMTFSDIDKGKEDFAPSADNGWVAMVQHYF
                     ASAWIPQQGAKRDIYVQKIDPALYRVGVQQPLQTIAPGQTVDVQSRLFAGPEEERMLE
                     GVAPGLELVKDYGMVTIIAKPLFWLLEKIHSYVGNWGWSIILLTLLIKAVFFPLSAAS
                     YKSMARMKTITPRMTQLRERYKGDPQKMNSELMALYKTEKVNPFGGCLPVVVQIPVFI
                     SLYWVLLSSVEMRGAPWVLWIHDLSQADPFYILPVMMAVSMFLQTRLNPTPPDPVQAK
                     MMMFMPLAFSVMFFFFPSGLVLYYVVNNVLSIAQQYYITRMMGQKKVAKA"
BASE COUNT          599 a          948 c          952 g          637 t
ORIGIN      
        1 ccaccatgct tttgcaggcg gtacagcgga ccgggacaac gtgcggttac gtcggattga
       61 gcggagattc taacgccaaa tgcaaccgcg gcgcgagtta tccacaggga cggtccatgc
      121 ggcgtatcga atcgtcaggc ctgtggactt cttcgaaaac cgctcgccat gcctcgtaac
      181 ctattgacgg tcaataggaa aacggtttaa atagcgggtt ccgcaaaacc cgaattcctg
      241 taccaccggc cggttcgtcg cgtttttcgt cgcttacgtc tggccggcgg tccgttttta
      301 cccaagtgag accaacatga aacgcactta ccaaccttcc gttacccgcc gcaagcgtac
      361 ccacggcttt cgcgtccgta tgaagacggc cggcggccgc aaggtgatca acgcacgtcg
      421 cgcgaagggc cgcaagcgcc tggctgtata aggtcgcttt tgacggcgca ccccggcact
      481 cgcccagacg cgtgcgacgg ccaggtgcgc agcacgacaa gctccggacc ggaaaccagt
      541 cagttgcgag cgcgtgccgc gttccccaag gccgcaaggc tgctgaaaac ggatgaatac
      601 tcatccgttt ttcgtttgcg cccctggcgc cggtctgcgc actttgtcct gtatggcaag
      661 ccgaccggca acgaggcgcg actgggcttg gttatcggca agaagtttgc gccgcgcgcg
      721 gtgacgcgca acctgatcaa gcggttggca cgcgaggcat tccggcttcg gcgagcggag
      781 cttggcggtt gggacatcct gctgcggctg catgcgaaaa ttgaccgcaa ggctatgccg
      841 agtgcgaaat cgccgccgct gcgtacgttg tttcgcgaag agatcgacgg cctgcttgac
      901 cgtgcagtgc gcgaagccgc gcggcgtact gaaggcatgg gggagcaggg tgcatcgccc
      961 atcgtcaacg acccacccgc gcctgcgggc tcatgagccg cttcaggcgc acaccggctt
     1021 ggtccggtcg acccgagcgc gaattctatg atgcagacgg cacgaatggc agaaacggcg
     1081 ttgatcgcct tattacgctt ctacaaggtt gcggtgagcc ccatgctcgg caaccggtgc
     1141 cgcttttacc catcgtgttc tgactacgcg cgcgaagcaa tccagtatca tggcgccgcg
     1201 cgtggctcat tcctcgcagc aaaacgtctg tgccgctgcc atccgttttc ggctggcggc
     1261 atcgatctgg tccccgtgcc tccgtccgcc gccggctgcg ttcagcagga tggcgcgtca
     1321 gcggccgacc cagtcgacga ctctgccccg agcgcatcga atttgccaga tccagtttca
     1381 tcggatccgg caaattcagt gagttcaaac ccccacggcg ccaataacgc gctcttcgat
     1441 cgacactgag acaacgcatg gatatcaaac gtaccgtcct atgggtcatc tttttcatgt
     1501 cggctgtcat gctgttcgac aactggcaac gtgaccatgg gcgcccgtcg atgttcttcc
     1561 cgagcgccgt cccgaccaag acggtcggca gcgctgcacc gggaaccacg acgccgggca
     1621 cgcaagccgc cgatttgccg tctacccctg gcgtacccgg cgcaccggtc gcgcctggtt
     1681 cgaacgcacc cgcttcgagc gccgcagacc agctcgtgaa tttttccacg gacgtctact
     1741 ccggccagat cgatacgcgc ggcggcacgc tgtcgaagct gtcgctcgtg aaggaaggtg
     1801 acggcaagca gccggatctg tacatcacgc tcttcgatca caccgcgacg cacacgtatc
     1861 tcgcgcgcac gggcctgctc ggcggcgact tcccgaacca caacgacgtc ttcacgctcg
     1921 taccgggcgg ccagacgtcg atgggtgacg gcaacacgtt gtccatctcg ttcgaatcgc
     1981 cggtgaaggg tggcgtgaag gtcatcaaga cctacacgtt cacgcgcggc agctatgtga
     2041 tcggtgtcga cacgaaggtg cagaacgtcg gcactgcgcc ggttacgccg cgcctctata
     2101 tggagcttgt gcgtgacgat tcgccggtgg aaacgccgcg cttctcgcat acgttcatcg
     2161 ggccggctgt ttataccgag cagcatcact tccagaagat gacgttcagc gatatcgaca
     2221 agggcaagga agatttcgcg ccctccgccg ataacggctg ggttgcgatg gtgcagcatt
     2281 actttgcgtc ggcgtggatt ccgcagcagg gcgcgaagcg cgatatctac gtgcagaaga
     2341 tcgatcccgc gttgtatcga gtgggcgtgc agcagccgtt gcagaccatc gcgccggggc
     2401 aaaccgtcga cgtgcaatcg cggctttttg ccggtccgga agaagagcgg atgctggaag
     2461 gcgtcgcgcc gggtctcgag ctcgtgaaag actacggcat ggtgacgatc atcgcgaagc
     2521 cgctgttctg gctgctcgag aagatccata gctatgtggg caactggggc tggtcgatca
     2581 tcctgctcac gctgttgatc aaggcggtgt tcttcccgct gtcggcggca agctacaagt
     2641 cgatggcacg catgaagacc atcacgccgc gcatgacgca attgcgtgaa cggtataagg
     2701 gcgatccgca gaagatgaat tcggagctga tggcgctcta taaaaccgag aaggtgaatc
     2761 cgttcggcgg ctgtctgccg gtcgtggtgc agattccggt gtttatctcg ctgtactggg
     2821 tgttgctgtc gtcggtggaa atgcgcggtg cgccgtgggt cttgtggatt cacgacttgt
     2881 cgcaggccga tccgttctac atcctgccgg tgatgatggc cgtttccatg ttcctgcaaa
     2941 cgcggttgaa tcccacgcca ccggatccgg ttcaggccaa gatgatgatg ttcatgccgc
     3001 tggctttctc ggtcatgttc ttcttcttcc cgtcgggact ggtgctgtat tacgtcgtaa
     3061 ataacgtgct ttccatcgcg cagcagtatt acatcacgcg catgatggga cagaagaagg
     3121 tcgcgaaggc ttaagc
//
LOCUS       DATGBK010001042         2389 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313244, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001042 DATGBK010000000
VERSION     DATGBK010001042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313244"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..1292)
                     /locus_tag="VKJ77_14585"
     CDS             complement(39..1292)
                     /locus_tag="VKJ77_14585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004532144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HMC46543.1"
                     /translation="MKLPYEWQIGWRYTRAGKRTTGNGFISFIALVSMAGIALGVAAL
                     IVVLSVMNGFQKEVRDRMLSVLAHVEVFSPTGSMPNWQLTAQEARKNPEVIGAAPYVD
                     AQALLTRQGAVSGVALRGVEPSLEPQVSDIGKEMRGGKLTDLVPGSFGIVLGADLATN
                     LGVTTGDKITLVAPEGTITPAGMLPRLKQFTVVGVFESGHYEYDSTLALISIADAQAL
                     FRLPAPTGVRLKLKDMQRAPEVARQLSRTLSGDLYIRDWTQQNKTWFSAVQIEKRMMF
                     IILTLIIAVAAFNLVSSLVMTVTDKQADIAILRTLGAQPGSIMKIFVIQGVTIGFIGT
                     ALGVTLGCLIAWSIPWLVPMIEHLLGVQFLPPSVYFISELPSELVPADVARIGLIAFV
                     LSSLATLYPSWRGAKVRPAEALRYE"
     gene            complement(1312..1632)
                     /locus_tag="VKJ77_14590"
     CDS             complement(1312..1632)
                     /locus_tag="VKJ77_14590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46544.1"
                     /translation="MWESQASMNCDMGVGNRPNGQHGGLNHRFSLRRVIPAKGVAKDC
                     VANFAFDRRRIGTPGSRQIDAVRIEKALLLPPLDRQDQDRKTAPGRKIPAVRRMRNVK
                     IEER"
     gene            1718..2005
                     /locus_tag="VKJ77_14595"
     CDS             1718..2005
                     /locus_tag="VKJ77_14595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HMC46545.1"
                     /translation="MNIMIQTFRCKDTQALYEGGTPKRFRAIADVAIRRLTALDAAVE
                     IRDLKSPPDNRLESLAGDRRGQLSVRINGQWRVCFKWTTKGPVDVEIIDYH"
     gene            2018..2320
                     /locus_tag="VKJ77_14600"
     CDS             2018..2320
                     /locus_tag="VKJ77_14600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="HMC46546.1"
                     /translation="MSKNGMRPVHPGEVLREDYLVPLEMSVNALALALNVPATRMHEI
                     VKERRGVTADTAYRLARYFDSTPEFWLNLQAMYDLKTLPTRSEIDRKVEPRELSRA"
BASE COUNT          515 a          737 c          681 g          456 t
ORIGIN      
        1 agatcgccga tgcttcgagc acgatgttgc tgttgttatc actcatagcg cagtgcctcc
       61 gccgggcgaa ccttcgcgcc gcgccagctc ggatagagcg tcgcgagcga tgacaaaacg
      121 aatgcgataa ggccgatccg cgcgacgtcg gcggggacga gttcagacgg caattcgctg
      181 atgaaataca ccgatggcgg caagaactgc acgccaagaa gatgctcgat catgggcacg
      241 agccacggaa tgctccacgc gatcaggcac cctagcgtca cgccaagcgc cgtgccgata
      301 aaaccaatcg tcacgccctg gatcacgaag atcttcatga tcgaaccggg ttgcgcacca
      361 agcgtccgca ggatggcgat atccgcttgt ttgtcggtta cggtcatcac cagcgacgac
      421 accaggttga acgccgccac agcaataatc agcgtcaaga tgataaacat catgcgtttc
      481 tcgatctgca cggccgagaa ccaagtcttg ttctgctgcg tccagtcgcg gatatagagg
      541 tcgccggaga gcgttcgcga cagttgccgc gccacttccg gcgcacgctg catgtccttt
      601 agcttcaggc gcacgcccgt aggcgccggc agccggaaca gcgcctgggc gtcggcgatg
      661 gaaatcagcg ccagcgtgga gtcgtattcg tagtgccccg actcgaacac gccgaccacg
      721 gtgaattgct tgagccgcgg cagcatgccc gccggcgtga tcgtgccctc gggcgcgacc
      781 agcgtgatct tgtcgcccgt ggtcacaccc agattggtcg ccagatccgc gcccagcaca
      841 atgccgaagc tgcccggcac gagatcagtg agcttgccac cccgcatttc cttgcctata
      901 tccgacactt gcggttccag cgacggctcc acgccccgca acgccacgcc gctgactgcg
      961 ccttggcgcg tcagcagcgc ctgggcgtcc acgtagggcg ccgcgccgat cacttccgga
     1021 ttcttgcgcg cttcctgcgc ggtcagttgc cagttgggca tggacccggt cggcgagaat
     1081 acttcgacgt gcgcgagcac ggacaacatg cggtcgcgaa cctctttctg gaacccgttc
     1141 attaccgaga gcaccacgat cagcgctgcg acgccaaggg cgataccagc catcgatacc
     1201 agcgcgataa acgagatgaa accgttgccg gtggtgcgtt tgccggcgcg ggtatagcgc
     1261 cagccgatct gccattcgta gggaagtttc aagcgattcc ttttcagcgt tctaacgttc
     1321 ttcgatcttt acattgcgca ttcggcgcac ggctggaatc ttgcgacctg gcgccgtttt
     1381 tctatcctga tcctgtctat ccagaggtgg caataacaac gccttttcaa tccttaccgc
     1441 gtcaatctgg cgcgagccgg gcgtaccgat ccgtctgcga tcaaacgcga agtttgccac
     1501 acaatcctta gccactcctt tagccgggat gacgcggcgg agggaaaaac gatggttcaa
     1561 gccaccatgc tggccattcg gacgatttcc cacgcccatg tcgcagttca tactcgcctg
     1621 actctcccac acggcaatat tccttcaaaa aatcggcctc tgccgcagcg acggttgacc
     1681 gccgtaacta ttgacgtatt acgcaaaacg taatacgatg aacataatga tacaaacgtt
     1741 ccgatgcaag gacacgcaag cactttatga aggcggaaca ccgaagcggt ttcgggcaat
     1801 cgctgatgtc gcgatcagaa gactcacggc actggacgct gcggtggaaa tacgtgatct
     1861 gaagtcgccg cccgacaacc ggctcgaatc ccttgccggc gaccggcgcg gtcagctcag
     1921 cgtccggatc aacggccaat ggcgcgtttg tttcaaatgg acgacgaagg gtcccgtcga
     1981 cgtcgaaatc atcgactatc actgaatagg gaagcacatg tccaagaacg gcatgcgtcc
     2041 ggttcatccg ggcgaagtct tgcgggaaga ctatctggtc ccgctcgaaa tgagcgtgaa
     2101 cgcactggcg ctggcgctga acgtgcccgc tacgcgtatg catgaaatcg tgaaggaacg
     2161 gcgcggcgtc acggccgaca cggcctatcg ccttgcgcgc tacttcgact caacgcccga
     2221 gttctggctg aatctccaag ccatgtatga cctgaaaact ttgccaacgc gcagtgaaat
     2281 cgaccgcaag gttgaacctc gtgagttgtc acgcgcgtga tgcatcgagc aaggcagtaa
     2341 gggaaacgtg ctgcgccgcc caggctctgg agtcggcgca gagcctggg
//
LOCUS       DATGBK010001043         3583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_243751, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001043 DATGBK010000000
VERSION     DATGBK010001043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3583
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243751"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..504)
                     /locus_tag="VKJ77_14605"
     CDS             complement(<1..504)
                     /locus_tag="VKJ77_14605"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HMC46547.1"
                     /translation="MIPFSVLDLSPVPVGSTAADAFRHSRELAQHAEKLGYLRFWLAE
                     HHNMTGIASAATSVVIGHVAAGTSTIRVGSGGVMLPNHAPLVIAEQFGTLESLFPGRI
                     DLGLGRAPGTDQTTARALRRDLQGSADNFPDDVVELQRYFADPVEGQRVRAVPGAGLN
                     VPIWLLGS"
     gene            complement(667..1479)
                     /locus_tag="VKJ77_14610"
     CDS             complement(667..1479)
                     /locus_tag="VKJ77_14610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HMC46548.1"
                     /translation="MKWVAALPMYNVTPALGRDWRVLLDHVHRGLRPWLDARGDTLSI
                     ADPGTSLQEFWLRDDLLLSQTCGYPLVRALAGRVQLVTTPVFTVDGCEAGDYHSVLVT
                     RAAANVTSLAQCRGLRAAYNTPDSNSGMNLLRSEVAPLAGGQPFFASVIETGGHLASL
                     QALQDDRADVAAIDCVSFAFVLDHLPDLARGLVQIGTTRSAPGLPLIASKRVPAEGIE
                     ALVSALSDAVAHDRPLAKRLKLDGFARRPLDDYASILEIEMDAVKRGYPRLA"
     gene            complement(1558..2583)
                     /locus_tag="VKJ77_14615"
     CDS             complement(1558..2583)
                     /locus_tag="VKJ77_14615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HMC46549.1"
                     /translation="MSLYIDDAQRHRIQQLRASWRWRSEWPTWFLIVAVYGGWFATAL
                     NARSIGIPFAVSILAVLSCLYLSLQHELLHGHPTRFPLFNALLGVAPLAVWFPYAVYR
                     ESHLRHHNDVHLTDPDLDPESYFVSAERWRGAGVAVRFLLVIRNTFFGRIVLGPWFSI
                     VKTIGSAFTQIARGNGRIAAAWALHLVLLGLLATWLERYCGISPALFIFGVGYPALAL
                     SAIRSFQEHRAADHVAERTVINEASWAWRLLFLNNNFHAVHHDLPSVPWFAVASVYHG
                     HRDAYLARNGGFIVRGYQEWLVRHGVQPIAPALHPLHARAADHIAQAQAGSAGSATLG
                     GDAAQPV"
     gene            complement(3220..>3583)
                     /locus_tag="VKJ77_14620"
     CDS             complement(3220..>3583)
                     /locus_tag="VKJ77_14620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46550.1"
                     /translation="VDRIDNAFVSWPARMGRSMKAKRSPTSEGPRTSTQADAELQHIE
                     RAIGQMRAMSQKPAGTLNVEYWQERLTAVCTGYVLVPAQRRRVDALRKVLVSLSQPQG
                     DPSSGRKRTTNRLWAKAA"
BASE COUNT          737 a         1081 c         1136 g          629 t
ORIGIN      
        1 cgagccgagc aaccagatcg gcacgttcag cccggcgccg gggacggcgc gcacgcgctg
       61 cccttccacc ggatcggcga aataacgctg taattccacg acgtcatcgg ggaaattgtc
      121 cgcgctgccc tggagatcgc ggcgcaatgc gcgggcggtc gtctggtcgg tgccgggcgc
      181 gcggccgagg cccagatcga tacgcccggg aaacagcgat tccagcgtac cgaactgctc
      241 ggcgatcaca agcggcgcgt ggttcggcag catgacgccg cctgagccca cgcggatcgt
      301 gctcgttccc gcggcaacat gcccgatcac cacggacgtg gcggcgctgg caatcccggt
      361 catgttgtga tgctcggcca gccagaatcg caggtaaccg agtttttccg catgctgggc
      421 cagctcgcgc gagtggcgga acgcgtcggc ggcggtagat ccaacgggaa cgggggataa
      481 atcgagaact gaaaacggga tcattgcggc ttccatgact tcgtgtaccg gcggcgcgcg
      541 ggcaccggca atccggttcc cgtcaagcgc ccatcccgga tgaaaatcca ggacgcacct
      601 tacacgcggg taagagccga ttgtgccgaa agtcaggaaa gtctgccgtg accacgctca
      661 acgccctcag gcgaggcggg gataaccgcg tttaacggcg tccatttcga tttcaaggat
      721 gctggcgtag tcgtcgagcg ggcgcctcgc aaaaccgtcg agcttgagcc gttttgccag
      781 aggacgatcg tgcgcgacgg cgtcggagag tgcgctcacc agtgcctcga taccctccgc
      841 cggcacccgt ttcgatgcaa tcagcggcaa gcccggcgca cttcgtgtcg tgccgatctg
      901 gaccaaacca cgggcaagat ccggaagatg atcgagtacg aacgcgaagc tcacgcagtc
      961 gatggcagcc acatcggccc ggtcgtcctg cagggcttgc agcgacgcca ggtggccgcc
     1021 cgtttcaatc accgatgcga agaacggttg gccgccggca agcggggcga cctcactgcg
     1081 cagcaggttc atgccgctgt tcgaatcggg agtgttgtac gccgcgcgca gaccgcggca
     1141 ttgcgcgagc gacgtgacat tggccgcagc ccgggtgacc aggacgctgt gataatcgcc
     1201 ggcctcgcag ccatcgacgg tgaaaacggg cgtagtgact agctgcacgc gtccggcgag
     1261 cgcccgcacc agcggataac cgcacgtctg cgacagcagc aggtcgtcac gcagccagaa
     1321 ttcctgcaga gacgttccgg gatcggctat ggagagcgtg tccccgcggg cgtcgagcca
     1381 tggccgcaag ccccggtgaa catgatcgag caaaacgcgc cagtcgcggc caagtgccgg
     1441 cgtgacgttg tacatcggta atgcggccac ccatttcatg cagattcttt cccgttgcgc
     1501 cgcccaatac cggtaccaac acccataccc atgccagcac ccggccggaa aaacacgtca
     1561 gacaggctgc gccgcgtcgc cgccaagcgt tgctgagccg gcggacccag cctgagcctg
     1621 tgcgatgtga tcagcggctc gcgcatggag cggatgcaac gcgggcgcaa tcggttggac
     1681 gccgtgccgc actagccatt cctgataacc gcgcacgata aaaccgccgt tgcgcgccag
     1741 atacgcgtcg cgatgcccat gataaacgct tgccaccgca aaccacggca cgctcggcag
     1801 gtcgtgatga acggcgtgaa aattgttgtt gaggaataga agacgccaag cccacgatgc
     1861 ttcgttgatg accgtgcgtt ccgcaacgtg atcggctgcg cgatgttcct ggaacgaacg
     1921 gatcgcactc aacgcaagcg ccggataccc aacgccgaat atgaaaagcg cgggactgat
     1981 gccgcagtag cgctcgagcc atgtcgcgag cagtccgagc aggacgagat gcaaggccca
     2041 cgcggctgcg atacggccgt tgccgcgtgc aatctgcgtg aacgccgacc cgatcgtttt
     2101 cacgatggaa aaccaggggc cgagaacaat gcgcccgaag aacgtgttgc ggataaccag
     2161 caggaaccgc acagccacgc cggcgccgcg ccagcgttcg gcggagacga aatagctttc
     2221 cgggtcgaga tcgggatcgg tgagatgaac gtcgttatgg tggcgcagat gcgactcgcg
     2281 atacaccgcg taagggaacc agaccgcgag tggggcgacg ccgagcagag cgttgaacaa
     2341 ggggaagcgt gttggatggc cgtgcaggag ttcatgctgc agcgacaaat acaggcacga
     2401 cagcacggcg aggatgctta ccgcgaaagg tattccgatc gaccgcgcgt taagcgccgt
     2461 cgcgaaccag ccgccatata cggccacgat cagaaaccag gtgggccatt cgctgcgcca
     2521 gcgccaggac gcacggagtt gctgtattcg atggcgttga gcatcgtcta tataaaggct
     2581 catggcaatt cagtgacgga acgagccacg atcttatcga cgcttcgccg cctgccaaac
     2641 caagcattcc cgctaagctt gttcccgtgt gaagaatcga ggtttgagcg gttgcacagg
     2701 atgagagtct gcggaccggg ccatttctat gcggctacga agcgctggaa cgcgcaacgt
     2761 cgcccattga gacccgcgag cagttgggct tagggaaaat ttgaaagctt attgtatgaa
     2821 tatttgccgt gagctcggtg gaggcgtgac aggtcgcagg cggtcatgac cggagcaacc
     2881 agcgtgcgga attatctgcg tgtatttctg gcgctgacgt tcattgacaa atgatcggcg
     2941 ggatatcgct ggtgccattc atcaaacaag ccgcgattgc atccgagatt gaatgacggt
     3001 gctcgttcat tgacttgaac gatgacgcgt gcgacggagg atggtgcacc tcgaaatcgc
     3061 ggttaaccgt gtggattaac cgcttggatt gaccgctcga attgcccttc tgaggccatg
     3121 cgaacgatcg aatgacaggc acacctgaaa cgcgacgtct ggcggcccga aggccgccgt
     3181 cgattacgcg cacgatgcgc gatggcgaaa gcgccgtagc tacgccgcct tcgcccaaag
     3241 cctgttggtt gttcttttgc gcccggagct ggggtcgccc tgtggttggg agagcgagac
     3301 cagtactttg cgcaatgcat cgacccggcg cctttgcgcc ggcaccagca cgtagcccgt
     3361 gcagacagcg gtcaagcgtt cctgccagta ctcgacgttg agcgtgccgg ccggcttctg
     3421 actcatcgcc cgcatctggc ctatggcccg ttcgatgtgc tgaagctctg cgtcggcttg
     3481 tgtcgacgtt cgtgggcctt ctgacgtcgg cgatcttttg gctttcatgc tgcgccccat
     3541 tcttgccggc cagcttacga acgcattgtc gattctatcg acg
//
LOCUS       DATGBK010001044         1821 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_197897, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001044 DATGBK010000000
VERSION     DATGBK010001044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197897"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            496..>1821
                     /locus_tag="VKJ77_14625"
     CDS             496..>1821
                     /locus_tag="VKJ77_14625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020647634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HMC46551.1"
                     /translation="MTDSASPDPVIARLDDTGAYSIPTPVQQPEPAAPADKPFGFHGA
                     IPAAPEPESAPAADDQSGNNASFSLDSGGFFLSVLNGSTDCIKILRLDGTLEFMNANG
                     ICLMEIDDFAPLKGKPWVSLWPEESRHLLVDAIDNARQGRHSRFEALCPTAKGTPKYW
                     DVSVSPVNEPSGAEWLVSISRDITERVLGVRSLDTALQEQKRLSEALERHRETLEGRI
                     EEALAALRASEAERRETAAALAQSQKMEAVGKLTGGVAHDFNNVLQVIGGNLQLAVQE
                     SNGNETLTRRLTCAHEAVERGAKLASQLLAFARRQPLEPVALDISRLLRSSDDMLRRL
                     LGETIELETVVSGGLWNTLADPNHLQNVIVNLAINARDAMDGAGRLTIEAGNAMLDDE
                     YTRHHDDLASGQYVMVAVSDTGCGMTPETLTRAFEPFYTTKAEGRGTGLG"
BASE COUNT          359 a          563 c          575 g          324 t
ORIGIN      
        1 tatgcgtgac aggcgccgat gaaccgggga gcgaagtggt tggttgagca agaagcgcgc
       61 acggcgcctc taatccgcat tcaaaaacgt gcatcgtcgc ggcggttgtg tggctaaacg
      121 aatccgaaac gcggcctttc gtcgcctccc ggtgaaagcc gccgggacat tcacgaaaag
      181 aggtcgaggc tcagctaaca aatttcgcgt ggtaaccgac tctaccggtg tcttcgatat
      241 cacgctgaat tgatcctgaa attaggcgat gacgcaataa ctacccgtca ccgggttggt
      301 ttttacacgc accgtgtgaa cgccgtgagg gcgatgcccc cataaagcgg gcgctgcaaa
      361 agcctctgcc atgcgcgcgg ccccgcttcc ccacactggc gcaatgcttg ctttccattc
      421 ccgatcacgt tgcagcgcat cgacttgaaa aacgccttgc gctgtcctcg ctgttctctc
      481 ttcagtgccc gattcatgac cgactcagct agtcccgatc ccgtgatcgc acgtctcgac
      541 gacacgggtg cgtacagcat cccgacgccg gtccagcagc ccgagcctgc ggcacctgcc
      601 gacaagccgt tcggttttca cggcgctata ccggccgctc ccgagccgga aagcgcgccc
      661 gctgctgatg atcagtccgg taacaacgct agcttttcgc tcgattccgg cgggtttttc
      721 ctgagtgtgc tgaacggcag cacggattgc atcaagatcc tgcggctcga cggtaccctc
      781 gaattcatga acgccaacgg catctgcctg atggaaatcg atgacttcgc gccgctcaag
      841 ggcaagccgt gggtgtcgct gtggccggag gaatcgcggc atctgctggt cgatgcgatc
      901 gataacgctc ggcaaggccg tcattcgcgc ttcgaagcgc tctgcccgac agcgaaaggc
      961 acgccgaaat actgggacgt ctccgtgtcg ccggtgaacg agccaagcgg cgcggaatgg
     1021 ttggtgtcga tttcccgcga tatcaccgag cgcgtgctcg gcgtgcgttc gctcgacacc
     1081 gcgctgcagg agcaaaagcg cttgagcgag gcgctggaac ggcatcgcga gacgctggag
     1141 ggccgcattg aagaggcgct ggcggcgttg cgggcgagcg aagccgagcg acgcgagacg
     1201 gcggcggcgc tcgcgcaatc gcaaaaaatg gaagcggtcg gcaagctgac cggcggcgtg
     1261 gcccacgatt tcaacaacgt gctgcaggtg attggcggaa atctgcagct cgccgtgcag
     1321 gaatcgaacg gtaacgaaac cctgacgcgg cgcctcacct gcgcgcatga ggcagtcgag
     1381 cgcggcgcga agctcgcatc gcaattgctt gcgttcgcgc gccgccaacc gctcgaaccg
     1441 gtggcgctcg atatttcgcg gctgctgcgc agttccgacg acatgctgcg ccgcttgctc
     1501 ggcgaaacca tcgaactgga aacggtggtg tcgggcggct tatggaacac gctggccgat
     1561 ccgaatcatt tgcagaacgt gatcgtgaac ctggcgatca acgcgcgtga cgcgatggac
     1621 ggcgcggggc gcctcaccat cgaggcgggc aatgcgatgc tcgacgacga gtacacgcgc
     1681 caccacgacg acctggcgag cggccagtac gtgatggtcg ccgtctccga tacaggttgc
     1741 ggcatgacgc cggagacgct gacgcgcgcc ttcgagccct tctatacgac caaggccgaa
     1801 ggtcgaggca ccggcctggg c
//
LOCUS       DATGBK010001045         1974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_174156, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001045 DATGBK010000000
VERSION     DATGBK010001045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174156"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..652
                     /locus_tag="VKJ77_14630"
     CDS             <1..652
                     /locus_tag="VKJ77_14630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="formylglycine-generating enzyme family protein"
                     /protein_id="HMC46552.1"
                     /translation="MGSNSDDPAERPVHRVSIGHPFAIGKYEVTIEQWNACADASGCP
                     HIDVEGNASKTAPIRNLSWDDAQAYVKWLTKTTGKTYRLPAEAEWEYAARGGTTTTYW
                     WGNEMRKGYADCKDCGEPWRKDSPVNVGSFLPNPFGLYDMNGSVWEWVGDCWHGSYKG
                     APADGRVWDEAGCPMRVIRGGSWPDGSAYMQSSTRFKYSASVRQSQNGMRVARDMK"
     gene            complement(672..>1974)
                     /locus_tag="VKJ77_14635"
     CDS             complement(672..>1974)
                     /locus_tag="VKJ77_14635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HMC46553.1"
                     /translation="NALAYAHERGFVHCDFKPANVFLTDTAEVKVIDFGIARVFQRPE
                     EETDATIFDPGSLGALTPAYASPEMLEHREPDPRDDIYALGCTTYELLTGRHPFDRVP
                     ATQARNSSLKPQRPDGLGTRQWRALRTSLAFEREARMPTVTQFLQEFGDTQKRSGMSG
                     AAVKAAVSAAALAVVAAGGYFYASSHRTAPPEQVAVVSDKVAAAPPAMPVVPALSLAT
                     VTPVLASVPCSALVASVQDQALSVTGYLGRSYGAQKLRSTLNEIPGVADPRVQVQEVA
                     NDKCDILKLIAPYLTASRPASIQTRDHNAQLTEGQPLVVQVTTPPYDSWVNIDYYQLD
                     GSVVHLLPNARSKDNQAPPNYAATIGSGGDWIVSKPFGSEMIVLLVTPAALFDAIRPD
                     SESRADYLRAVEKRLGELASKFGRDKIAADLVQIDTHPRKQ"
BASE COUNT          375 a          602 c          649 g          348 t
ORIGIN      
        1 aatgggcagc aattctgacg atcctgccga acgtcccgtg catcgggtca gcattggcca
       61 cccgttcgct atcggcaaat acgaagtgac catcgagcag tggaacgcgt gcgcggatgc
      121 aagcggatgc ccgcacatcg atgtggaagg caacgcctca aagaccgcgc ccatccgcaa
      181 tctaagttgg gacgacgcgc aggcctacgt caagtggctg accaagacga cgggcaagac
      241 gtatcgcctg ccggccgaag ccgagtggga atatgccgcg cgcggcggta ccacgacgac
      301 ctactggtgg ggcaacgaaa tgcgcaaggg ctatgccgac tgcaaggact gcggcgaacc
      361 gtggcgcaag gatagcccgg tgaacgtggg ctcgttcctc cccaacccct tcggactcta
      421 cgacatgaac ggcagcgtgt gggaatgggt cggcgactgc tggcacggct cgtataaggg
      481 cgcgccggcc gatggccgtg tgtgggacga ggcgggctgc ccgatgcgcg tcatccgcgg
      541 cggctcatgg cccgacggca gcgcctacat gcagtcgtcc acgcgattca aatacagcgc
      601 cagcgtgcgc caatcgcaaa acggcatgcg cgtggcgcgc gacatgaaat aacggggtct
      661 tgcaacgggc actactgttt gcgcggatgg gtgtcgatct gaacgagatc ggcggcgatc
      721 ttgtcgcgcc cgaatttact ggcgagttcg ccgagccgtt tttccacggc acgcaaatag
      781 tccgctcgcg actcgctatc gggcctgatc gcatcgaaca aggccgcggg cgtcacgagc
      841 agcacaatca tctccgagcc gaacggcttc gatacgatcc agtcgccccc gctgccaata
      901 gtcgcggcgt agttcggcgg cgcctggttg tctttcgaac gtgcattcgg cagcaggtgg
      961 actacgctgc cgtcgagttg gtaatagtcg atattgaccc atgaatcgta gggtggcgtg
     1021 gtgacctgaa cgactagggg ctggccttcg gtcaactgcg cattgtgatc ccgggtttga
     1081 atcgatgccg gccggctagc cgtcaagtac ggcgcgatca gcttgaggat gtcgcatttg
     1141 tcgttggcga cttcctggac ctgtacgcgc ggatcggcga cgcctggtat ctcgttgagc
     1201 gtgctgcgca acttctgcgc gccatagctc cggccgagat agccggtcac gctaagcgcc
     1261 tggtcctgca ccgatgccac cagtgccgag cacggcacac tcgcgagcac gggcgtgacc
     1321 gttgcgagag aaagcgcggg gacaaccggc atggccggcg gtgcagcagc gactttgtcc
     1381 gacacgaccg cgacttgctc cggtggcgcg gtgcgatgcg acgacgcata gaaatagccg
     1441 cccgcagcca ctacggctag cgcggccgcc gaaaccgccg ccttcactgc ggcacccgac
     1501 ataccgctac gtttttgggt atcgccgaat tcctgcagaa actgcgtgac cgtcggcatg
     1561 cgcgcttcac gctcgaatgc aagcgacgtc ctgagtgccc gccattggcg cgtccccaga
     1621 ccatcgggac gctgcggctt gaggctcgag ttgcgtgcct gggttgcagg aacacggtcg
     1681 aaggggtgcc gaccggtcag caactcgtag gtcgtgcagc ccagcgcgta gatatcgtca
     1741 cggggatcgg gctcacgatg ttcgagcatc tccgggctcg cataagcggg cgtcagcgcg
     1801 ccgaggctgc cggggtcgaa gatagttgcg tcggtctctt cctcgggccg ctggaacacg
     1861 cgggcgatgc cgaagtcgat gaccttcacc tcggcggtgt cggtcaggaa cacgttggcg
     1921 ggtttgaaat cgcaatggac gaaaccacgc tcgtgcgcat aggccagcgc attc
//
LOCUS       DATGBK010001046         2012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290448, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001046 DATGBK010000000
VERSION     DATGBK010001046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290448"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..545
                     /locus_tag="VKJ77_14640"
     CDS             <1..545
                     /locus_tag="VKJ77_14640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017450168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HMC46554.1"
                     /translation="YQTYFQGAQFVHFLLGPATVALALPLYRQLPKLRRAAVPLAGGL
                     IAGSLTAIVSATAVAMLFGVSRVTVISLAPKSATTPIAMAIAERLGGLPSLTAVLVIC
                     TGVFGAVSARTILNVLRIEEPDVRGFALGVASHGIGTARAFQVSDEMGAFAGLGMGLN
                     GLFTAFVVPVLLPMILRWVN"
     gene            751..1020
                     /locus_tag="VKJ77_14645"
     CDS             751..1020
                     /locus_tag="VKJ77_14645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46555.1"
                     /translation="MSLHVRSVFFTAGLIALGGLLQVSPSQAATSVDPGIYSDTPLAF
                     KADRGIFSGVPTQPVDGGIFSPIDMPGDTHAPKRVQDHVRLRHDL"
     gene            1229..1930
                     /locus_tag="VKJ77_14650"
     CDS             1229..1930
                     /locus_tag="VKJ77_14650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006756773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2968 domain-containing protein"
                     /protein_id="HMC46556.1"
                     /translation="MNSNNTTRGGALVLAWFVLCGAACAAGPTAPMQGSAPAANALGD
                     SSARRSLLTNGAADEPQATVNGNIAELQQMIRDSKVKELRTTYNGSYGASMLFYPDEM
                     TFYIALFQQKKFWRVVKTQVDSRAETIYADFAKNSEALADTEIRRTKLEAEKNFADRL
                     IAVQQGRANRLQADLDVARAQQSQVADRQAEQQEAIRSLRAEQDAAQAQLRALQTKVQ
                     DLQRQSDVDLMPLPK"
BASE COUNT          386 a          589 c          603 g          434 t
ORIGIN      
        1 cgtatcaaac ctatttccag ggcgcccagt ttgtccactt tctgctcggc ccggcgacag
       61 tcgcgctcgc gctgccgctc taccggcaac taccgaagct gcgccgcgcc gccgtgccgc
      121 tggccggcgg cctgatcgcc ggatcgttga cggcgattgt gtccgcgacc gccgttgcga
      181 tgttattcgg cgtgtcgcgc gtgacggtga tatcgctcgc gcccaagtct gcgaccacgc
      241 cgatcgccat ggctattgcg gagcgactgg gcggactgcc gtcgctgacc gccgtgctgg
      301 tgatttgcac cggcgtgttc ggggcggtat cggcgcgcac gatcctcaat gttttacgca
      361 ttgaagaacc cgatgtgcga gggttcgcgc taggcgtggc gtcgcatggc atagggacgg
      421 cgcgcgcttt ccaggtcagc gatgaaatgg gcgcattcgc cggcctcggc atgggcctga
      481 acggactgtt cacagcgttc gtggtgccgg tcttgttgcc gatgattttg cgctgggtca
      541 actgacccgc agagaattga aacgatagac gcaatccagg acaaattcgg aactcgctca
      601 tggtccggtc ggcacggtga tggtctcatg ctggttggtt gcgagcgctg acatttggcg
      661 cgcgcgagtt ccacatctgg ttcacgcctg tcacgagtac gcggttcaat ggttgttcgc
      721 gcgcaggcat ttttgcggcg agtccttctc atgtctttgc atgtccgttc agttttcttc
      781 accgccggcc tgattgcgtt gggcggtttg ttgcaggtct cgccgagcca ggcagcgacc
      841 tccgtcgatc cgggtatcta ctccgacacg ccgcttgctt tcaaggccga tcgcgggatc
      901 ttttccggag tgccgacaca acccgttgac gggggcatct tctcgcctat cgacatgccg
      961 ggcgacacgc atgccccaaa gcgtgttcag gatcacgtgc gcttgcgtca cgatctatag
     1021 aaaacggcag aattgcgcaa tgaagtgtgc agtgcttatg cagcgagccg tcacttgaat
     1081 cgcttcacga atcgtttcaa accgctgagt gttttcagcc gatggtgaga ctgtaaaaag
     1141 cctcttcatg cattttccgc tttagctttt ctatctgcca taattccggt gctttcgcat
     1201 tcttaattgc gttcaacccg gaaattccat gaactccaac aatacaacga gaggcggggc
     1261 actggtcttg gcatggttcg tcctgtgcgg cgcagcgtgt gccgccgggc ccacagcgcc
     1321 catgcaaggc agtgccccgg cagccaatgc acttggggac tcaagcgcgc gccgcagtct
     1381 tctgaccaac ggcgcggccg acgaaccgca ggcaaccgtg aatggcaaca tcgccgaact
     1441 gcagcaaatg attcgcgaca gcaaggtaaa ggaattgcgc accacgtata acggcagcta
     1501 tggcgcgagc atgctgtttt accccgatga aatgacattc tatatcgcat tgtttcagca
     1561 aaagaaattc tggcgcgtgg tcaagactca agtggattcg cgtgcggaaa caatatacgc
     1621 ggactttgcc aagaacagcg aggcgctcgc ggataccgag atccgccgga ccaagctcga
     1681 agccgagaag aactttgctg accggctgat cgcagtccaa caaggacgcg cgaatcgtct
     1741 gcaggccgac ctcgacgttg cgcgggcgca gcaaagccaa gtcgccgacc ggcaggcgga
     1801 gcaacaggaa gcgatccgtt cgctgcgcgc ggagcaggat gccgcgcaag cgcaattgcg
     1861 tgcattgcaa accaaggtgc aggatcttca gcgccagtcg gatgtcgacc tgatgccgtt
     1921 gccaaagtga agtgcgcctg acgggtcagg cttcccgatg tttgcctttg ctgcctgcgc
     1981 ttcgatcgct cgcagcgcat ttcgaactgt ga
//
LOCUS       DATGBK010001047         2623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_150866, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001047 DATGBK010000000
VERSION     DATGBK010001047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150866"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..1450)
                     /locus_tag="VKJ77_14655"
     CDS             complement(86..1450)
                     /locus_tag="VKJ77_14655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46557.1"
                     /translation="MTALQRRGMAAILLAVSLATLDTAIANTALPAIAADLHATPAAS
                     VWIINAYQLAMVATLLPFAALGGIVGHRKIYLGGLILFLVASLTCALSWSLPSLTAAR
                     LLQGIGASAVMSVNTALIGAIYPHHRLGRGFGLNALVVGISFAVGPTVASIVLSLGPW
                     PWLFAVNLPVGLLALFIGWPALPQTPRAQHGFDRVAAVLNVITFAALVFALGEAAQRA
                     PTHIVLIALAVTAVAGGLMLHRERGHPAPMLPVDLFKRPMFALSTATAVCSFAAQGLA
                     FVSLPFYFESVLGRSQVETGFLMTPWSVMVALLAPVAGRLSDRHQPGLLGGIGLAIMC
                     AGMASLALLPAHPHALDICIRMAICGAGFGFFQSPNLKALMASAPRERSGGASGVVAT
                     ARLIGQATGAALVALSFGIAGHHGPALALAIGAGFAGVASIASGLRLITRDKPVETMQ
                     TAEK"
     gene            complement(1572..2504)
                     /locus_tag="VKJ77_14660"
     CDS             complement(1572..2504)
                     /locus_tag="VKJ77_14660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006028756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HMC46558.1"
                     /translation="MLPTVLVLVPLRPESQTTVANAFNVITALDQTALDQALTRHGDE
                     IRAVLTNGTIGIDAASIAKLPNLELIGALGAGYENIARDAAQARGITVVNGAGTNDDC
                     VADHAFALLLGVVRQIPVLDRACRAGVWRDDLPFQPNFSGKKLGVIGLGNIGRKVAKR
                     AQGFDIEIGYHNRRPQPDSAYRYFDSVIELAEWADYLVVATPGGASTKHLIDASVLAA
                     LGSKGYVVNVARGSVVDTAALADALERGVIAGAGLDVYEGEPAPPALLTGSERVVLTP
                     HVGGRSPEAVAASVQMFIDNATRHFAGEAVLTPV"
BASE COUNT          508 a          854 c          834 g          427 t
ORIGIN      
        1 atcaagctcc acgcgcagaa cagcgtgctg tctggcgcgg cccggcgatt cgcgctatcg
       61 cctcttgcac tacacgacca tcagcctact tttccgctgt ttgcatcgtt tcgacgggtt
      121 tatcgcgggt aatcagccgc aagccgcttg caatactcgc tacgcctgcg aatcccgcac
      181 caatcgccag cgccagcgcc ggtccatgat gccccgcgat accaaagctc agcgcgacca
      241 acgccgcgcc ggtcgcctgg ccgatcagcc gagcggttgc caccacgccg ctcgcaccgc
      301 cgctacgctc gcgcggggcg ctcgccataa gcgccttcag attgggcgat tgaaagaacc
      361 caaaacccgc gccgcatatg gccatgcgga tacagatatc gagtgcatgg ggatgagccg
      421 gcaataacgc cagcgacgcc atgcccgcgc acatgatcgc gaggccgatg ccgcccagca
      481 gccccggttg gtgtcgatcc gataaacgac cggcgaccgg cgccagcaat gccaccatca
      541 ccgaccacgg tgtcatcagg aagccggtct ccacctgact gcgcccgagc acgctttcga
      601 aataaaacgg cagcgacacg aacgccaacc cttgcgcggc gaacgagcac acggcggttg
      661 ccgtcgataa cgcgaacatc gggcgcttga agagatcgac ggggagcatc ggcgccggat
      721 gaccgcgttc ccgatgcaac atcaatccgc ccgccacggc cgtcaccgcg agcgcgatca
      781 gcacgatatg cgtgggcgca cgctgcgccg cttcgccaag cgcgaacacc aacgcggcga
      841 aggtgatcac gttcagcacg gccgccacgc ggtcgaagcc gtgttgcgcg cgcggcgtct
      901 gcggcaaagc cggccagccg ataaacagcg ccagcagccc caccggcagg ttcacggcaa
      961 acagccacgg ccagggtccg agcgagagca cgatcgacgc gacagttggt ccgaccgcga
     1021 acgatatccc caccaccagc gcgttcagtc caaaaccccg cccaagtctg tgatgcggat
     1081 agatcgcccc gatcagcgcc gtgttcacgc tcatgaccgc gctcgcgcca atgccctgca
     1141 acagccgcgc cgcggtgagc gacggcagcg accacgacaa cgcgcaggtc agcgacgcca
     1201 cgagaaacag gatcagccca cccagataga tcttcctgtg cccgacgatg ccgcccagcg
     1261 ccgcgaacgg cagcagcgtg gcgaccatcg ctagctgata cgcgttgatg atccagacgg
     1321 atgcggcggg cgttgcgtgg agatcggcgg cgatcgcggg gagcgcggta ttcgcgatgg
     1381 cggtatcgag cgtggcgagt gaaacggcga gcaggatggc cgccatgccg cgacgctgga
     1441 gcgcggtcat ggggccgtcg gtggggagag tggtctggtc tgacacggtt tttaggattg
     1501 gacttgatcg gcgatagtcc gacacgatac gggatcgtgg cgaagctcgc cgggcacccc
     1561 cgcgggagct ttcaaacagg tgtcagtacg gcctcaccgg cgaagtgccg cgtggcgtta
     1621 tcaatgaaca tctggaccga cgccgctacc gcttccggtg agcgcccgcc cacgtgcggc
     1681 gtcagcacga cgcgctcgga gcctgtcagc aacgcgggcg gtgcgggctc gccttcgtag
     1741 acatcgagcc ccgcgccggc tatcacgccg cgttcgagcg cgtccgcgag agcggcggta
     1801 tccacaacac tgccgcgcgc cacgttcacc acgtagcctt ttgagccgag cgcggcgagc
     1861 acgctggcgt cgatcagatg tttcgtcgat gcgccgccgg gcgtggcgac cacgaggtaa
     1921 tccgcccatt cggctagctc gatcactgag tcgaagtacc tatatgccga atccggttgc
     1981 ggccggcgat tgtgataacc gatctcgata tcgaagcctt gcgctctctt agccaccttc
     2041 ctgccgatat tgccaagccc aatcacgcct aattttttgc ccgagaagtt cggctggaag
     2101 gggagatcat cgcgccagac gcccgcgcgg catgctcgat cgagtacggg gatctggcgg
     2161 acgacgccaa gcagcagtgc gaaggcgtga tcggcgacgc agtcgtcgtt ggtacccgcg
     2221 ccgttcacca cggtgatgcc gcgcgcctga gcagcgtcgc gtgcaatgtt ttcgtagccc
     2281 gcgcctaacg cgccgatcag ttcgaggttc ggcagtttcg cgatggacgc tgcatcgatg
     2341 ccgatagtgc catttgtcag cacggcgcga atttcatcac cgtggcgggt gagggcttga
     2401 tcgagcgcgg tttgatcgag ggccgtaatg acgttgaagg cgttggcaac ggtggtttgg
     2461 ctttcggggc gcagcggaac caggacgagg acggtgggga gcatgggcgc aagggttgaa
     2521 ggagcgaagc gccaagtttc gcattttttt gagatgacgt cgggacgtcc ctcgcgcggt
     2581 caaaacgtct tggcacatta gagctttggc caatcctccg ctt
//
LOCUS       DATGBK010001048         1891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_174209, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001048 DATGBK010000000
VERSION     DATGBK010001048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1891
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174209"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1891
                     /locus_tag="VKJ77_14665"
     CDS             <1..>1891
                     /locus_tag="VKJ77_14665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46559.1"
                     /translation="MGTDLHEAILEGAGEIAVPALVSTLCICIVFVPMFFLTGVAKFL
                     FVPLAEAVVFAMLASYILSRTLVPTLAMLLMGHAHKPKNGSKPNVFMRLYHRFDAGFE
                     RMRATYIVILSTLLVRRRMFASLFLGFCVLSVGLVFVLGEDFFPTVDAGDIRLHMRAP
                     TGTRIEETARLADQVEEVVRQVVPAAQLNTILDNLGLPYSGINLSYSNAGTIGTLDGE
                     IQVALKADHEPTQNFVDKLRAVLPQRFPGVEFFFQPADIVTQILNFGLPAAIDVQISG
                     ADQKGNFAVAAKLMKAIRQIPGTVDTHIQQKLDEPALNLQMDRTRLQQLNLTANNVAQ
                     NVLISLSGSSQTSPGFWFNNKNGVEYSVAVQTPQYQISSIDELLRTPVSGSATGPTQL
                     LGNLVQVTPQNQFAVVTHYNIRPVIDVFVSVEGRDLGSIATEVDKLVNQARATLPRGS
                     QIVVRGQVATMRSSFLGLGVGVAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIV
                     WMLFLTGTHLSVPALTGAIMTMGVATANSILMVSFARQRLQAGAPPLTAALEAGASRI
                     RPVLMTAFAMIIGMIPMALGLGEGSEQNAPLGRAVIGGLLFATVSTLFFVPLVFAGIH
                     SRLARR"
BASE COUNT          319 a          581 c          591 g          400 t
ORIGIN      
        1 catgggcacg gatctgcacg aagccattct tgagggggcc ggcgaaatcg cggttcccgc
       61 gctcgtctcc acgctgtgta tctgtattgt gttcgtgccg atgttcttcc tcaccggcgt
      121 ggcgaaattt ctgtttgtgc cgctcgccga agccgtggtg ttcgcgatgc ttgcgtcgta
      181 catcctgtcg cgtacgctgg tgccaacgct cgcgatgttg ctgatgggtc acgcgcacaa
      241 accgaagaac ggttcgaagc cgaacgtgtt catgcggctg tatcaccgtt tcgatgccgg
      301 tttcgagcgc atgcgcgcca cctacatcgt gatcctgagc acgctgctcg tgcgccgccg
      361 catgttcgca tcgctatttc ttggcttttg cgtgctgtcg gtgggactgg tgttcgtgct
      421 cggtgaagac ttcttcccga cagtcgacgc cggcgacatc cgcctgcata tgcgcgcgcc
      481 gaccggcacg cgcattgagg aaacggcacg gctggctgac caggtcgaag aagtagtacg
      541 gcaggtcgtg ccggcggctc aactcaacac gatcctcgac aacctcggct tgccgtatag
      601 cggcatcaac ttgtcttaca gcaacgcggg cacgatcggt acgctcgacg gtgagatcca
      661 ggtggcgttg aaggcggacc acgaacccac gcagaacttc gtggacaagt tgcgcgctgt
      721 gctgccgcag cgttttccgg gcgtcgaatt tttcttccag cctgcggaca tcgtgacgca
      781 gatcctgaac tttggtttgc cggcggccat tgacgtgcag atttccgggg ccgaccagaa
      841 gggcaatttc gcagtcgccg cgaagctgat gaaagcgatc cgccagattc ccggcacggt
      901 ggacacgcac atccagcaga agctcgacga acccgcgctc aacctgcaga tggatcgtac
      961 ccggctccag cagctcaacc tgacggcgaa caacgtcgcg cagaacgtgc tgatttcgtt
     1021 gtcgggcagc tcgcagacat cgccgggttt ctggttcaac aacaagaacg gcgttgagta
     1081 ttcagtcgcg gtgcagaccc cgcagtacca gatttcatcg atcgacgaat tgctgcgcac
     1141 gccggtttcc ggcagcgcca ccgggcccac gcagttgctt ggcaacctcg tgcaggtcac
     1201 gccgcaaaat cagttcgcgg tagtcacgca ctacaacatc cgcccggtca tcgacgtgtt
     1261 cgtgagcgtg gaaggccgcg acctcggcag tattgcgacg gaggtcgaca agctcgtgaa
     1321 ccaggcccga gcaaccttgc cgcgcggcag ccagatcgtc gtgcgcggcc aggtcgcgac
     1381 catgcggtcg tcgttccttg gcctgggtgt cggcgtcgcg atggcgatcg tgctggtgta
     1441 tctgctgatc gtggtgaatt tccagtcgtg ggttgacccg ctgatcatcg tcagcgcgtt
     1501 gccggcggcg cttgccggta tcgtctggat gctgttcctc accggcacgc acctgagcgt
     1561 tccggcgctc accggggcca tcatgacgat gggcgtggcg accgcaaaca gtatcctgat
     1621 ggtgtccttt gcgcgccagc ggctgcaagc cggcgcacct ccgctgaccg cggcactcga
     1681 agccggcgcg agccgaattc gtccggtgct gatgacggcg ttcgccatga tcatcggcat
     1741 gattccgatg gcgcttggtt tgggcgaggg ctctgaacaa aacgcgccgc tcggccgcgc
     1801 ggtgatcggc ggattgctgt tcgctactgt ttccacgctc tttttcgtgc cgctcgtgtt
     1861 tgcgggtatt cacagccggc tggcccggcg g
//
LOCUS       DATGBK010001049         1900 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_36329, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001049 DATGBK010000000
VERSION     DATGBK010001049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1900
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36329"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1900
                     /locus_tag="VKJ77_14670"
     CDS             <1..>1900
                     /locus_tag="VKJ77_14670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46560.1"
                     /translation="FAVTLSIAILISLVISLTVTPAMCAYVLSREHAGHSRARWATWV
                     EAQFDRFKNAYARSLTAVLDHSLLVILLLIGLLVANFFLFKLLPATFFPEQDTGILGG
                     QIIADQSISFPAMEKKLAQLQAIVQKDPAVESVAGFTGGRALNTANVFIELKPLAQRH
                     ASATEVVNRLRPKLNAVSGARLFLQAQQDLRIGGRQSAAEYQYTLTSDDSAALFAWTP
                     KLVTALNKDHDQLLDVNSDLQQNGLQTYVNFNRATAARYGFAPNQIDNVLYDAFGQRT
                     VSTIYNALNQYFVVMEVAPEYWQYPQTLNQIFMSTAAGNPTGSQQTQMPGATVKGVTA
                     ASAVSTASSSSSTNSLNSNAQANATNNSISNSKGGSSSGSADSTSAETMVPLPVLTSY
                     VNNHTSTQVNHQSGLVAATISFNLPAGGSLSKAQIDIENAQREIGMPASIHGAFAGAA
                     QAYAASMGTIPLLIIAALGVVYIVLGVLYESSIHPLTILSTLPSAGIGATLALLIFGT
                     PFSVIALIGMILLIGIVKKNGIMMVDVAIQLQRNEGMPAKEAIHAAAVVRLRPIMMTT
                     FAAVLGAVPLAIGIGQGASLRQPLGITVMGGLILSQVFTLYTTPVIYLYMDRLRFKLV
                     KWSSGLPWN"
BASE COUNT          355 a          604 c          573 g          368 t
ORIGIN      
        1 ttcgcagtga cgctgtcgat cgccatcctg atctcgctcg tgatctcgct cacggtcacg
       61 ccggccatgt gcgcttatgt actgagccgc gagcacgccg gccattcgcg ggctcgctgg
      121 gcgacctggg tcgaggccca attcgatcgt ttcaagaacg cctacgcgcg ttcgctcacc
      181 gccgtgctgg accattcgct gctggtgatc ctgttgctga tcggcttgct ggtcgcgaac
      241 ttcttcctgt tcaagctgct gcccgctacc ttcttcccgg agcaggacac cggcatcctg
      301 ggcgggcaga tcatcgccga ccagagcatc tccttcccgg cgatggaaaa gaaactcgcc
      361 cagttgcagg cgatcgtgca gaaggatccg gcggttgaat cggtggcggg ttttaccggt
      421 ggccgcgcgc tgaacaccgc gaacgtgttt attgaactca agccgctcgc ccagcgccat
      481 gcgagcgcga cagaagtggt caaccgtctg cggcccaagc tgaacgcggt ctccggtgcg
      541 cggcttttcc tgcaggcgca gcaggatctg cgtattggtg gacggcagtc agccgccgaa
      601 taccagtaca cgctgacaag cgatgattcc gcggcactgt tcgcgtggac gcccaagctc
      661 gtgaccgcgc tcaacaagga ccacgatcag ttgctcgacg tcaactcgga cctgcagcaa
      721 aatggtctgc aaacctacgt caatttcaat cgcgccacgg cggctcgcta cggcttcgcg
      781 ccgaaccaga tcgacaacgt gctgtatgac gcgttcggcc agcggaccgt atcgactatc
      841 tacaacgcgc ttaaccagta cttcgtggta atggaagtgg cgccggagta ctggcaatat
      901 ccgcagacgc tcaaccagat tttcatgagc acggcggcgg gcaatccgac cggttcgcag
      961 cagacgcaaa tgccgggcgc aacagtcaag ggcgtaacgg ccgcgagcgc ggtgagcacc
     1021 gcgtcgagtt cgtcgagcac caactcgctg aactcgaacg cgcaagccaa cgcgaccaac
     1081 aacagcatct ccaacagcaa gggcggcagt tccagcggca gcgcggacag cacctcggcc
     1141 gagaccatgg tgccgctgcc ggtgctcacc agctatgtca acaaccatac gtcgacccag
     1201 gtgaaccatc agagcgggct ggtggccgcg accatctcct tcaacctccc cgccggcggg
     1261 tccctcagca aggcccagat cgacattgag aatgcgcagc gcgaaattgg catgccggcc
     1321 agcatccacg gtgcgttcgc cggcgccgcg caagcctacg cggcgtcgat gggcactatc
     1381 ccgctgctga tcatcgcggc gctcggtgtg gtgtacatcg tgctgggggt actctatgag
     1441 agttcgattc acccgctcac gatcttgtcg acgctgccct cggccggtat aggcgccacc
     1501 ctcgcgctgc tgattttcgg cacaccgttt tccgtgatcg cgttgatcgg catgatcttg
     1561 ctgattggta tcgtcaagaa gaacgggatc atgatggtcg acgtggcgat ccagttgcag
     1621 cgcaacgaag gcatgccggc caaggaggcg attcatgcgg ccgccgtcgt gcgtctgcgg
     1681 ccgatcatga tgaccacgtt cgctgccgtg ctcggtgcgg tgccgcttgc gatcggtatt
     1741 ggccagggcg cgtcgctgcg ccagccgctg ggtattaccg tgatgggcgg cctgatcctg
     1801 agccaggtct ttacgctgta caccacaccg gtgatttacc tgtacatgga ccggttgcgc
     1861 ttcaagctcg tcaagtggtc ttccggattg ccgtggaacc
//
LOCUS       DATGBK010001050         3342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_221124, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001050 DATGBK010000000
VERSION     DATGBK010001050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221124"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..163
                     /locus_tag="VKJ77_14675"
     CDS             <1..163
                     /locus_tag="VKJ77_14675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HMC46561.1"
                     /translation="TYAFVNIGMVSGILPVVGVPLPFMSYGGTALTTLGVAVGLIMSV
                     SRQKRLMKG"
     gene            complement(231..905)
                     /locus_tag="VKJ77_14680"
     CDS             complement(231..905)
                     /locus_tag="VKJ77_14680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC46562.1"
                     /translation="MKPGILGAVSVALVMACSGASAQTVKGSDMATQNAVADYNAGNL
                     SVARSEFLHAAQKGSRLAEFNYAMMLVNGEGGSAEVDEGKKWLRKAADANMTQAQYVY
                     GKMFDDGEFVERDPAEAHRWFLRAANQGHVLAELALANQFLDGRGTPRDNAQAFVWYK
                     KAAEGGDMTAQYVAGSFYERGGDGVQKNINVARAYYAAAAAQGDPAAKLKFQQLSAEL
                     AHERPQ"
     gene            complement(902..1684)
                     /locus_tag="VKJ77_14685"
     CDS             complement(902..1684)
                     /locus_tag="VKJ77_14685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HMC46563.1"
                     /translation="MSTYTNLLKQRFTETGTLYGLWLSLGSADVAEAVAHAGFDWLCI
                     DMEHSPNDSHDVVAQLRAIAAAHLPTEPIVRVPAHEGWLVKRVLDAGARTLMFPNVET
                     AEEAAHVVRLTQYPNADARDGLRGAAGAVRAAAYGVRRDYVSSANAQISTIVQIESEQ
                     ALANVEAIAATPGVDCLFIGPADLAASLGHLGDTKHPDVLQAITKIIDTAKQAGIASG
                     IFALDVASARSYAEAGVKVIALSADVGWLLKATRQALQEARA"
     gene            complement(1865..2311)
                     /gene="queD"
                     /locus_tag="VKJ77_14690"
     CDS             complement(1865..2311)
                     /gene="queD"
                     /locus_tag="VKJ77_14690"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HMC46564.1"
                     /translation="MQTITRKLEFDAGHRIPDHRSQCRNLHGHRYVLEITLQGELVET
                     EGAPDRGMVMDFADVKALAMEHLVNKWDHAFIVYARDEVVRSFLDTMADHKTVVLDRI
                     PTVENLAAEAFRILSGVYNDHYGVDLKLKRVRLYETPNCWADVEGV"
     gene            complement(2340..2972)
                     /gene="queE"
                     /locus_tag="VKJ77_14695"
     CDS             complement(2340..2972)
                     /gene="queE"
                     /locus_tag="VKJ77_14695"
                     /EC_number="4.3.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase"
                     /protein_id="HMC46565.1"
                     /translation="MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADA
                     VCQFCDTDFVGTDGENGGKYRTPADLVAMIASQWPEGEAHKFVVCTGGEPMLQIDPPF
                     VDALHAAGFEMAIETNGSLPVLDSIDWICVSPKAGAPLVVTKGNELKVVVPQDNQPLA
                     DYAKLDFEYFLVQPMDGPSRDINTKLAIDWCKRHPQWRLSMQTHKYLNIP"
     gene            complement(2975..>3342)
                     /locus_tag="VKJ77_14700"
     CDS             complement(2975..>3342)
                     /locus_tag="VKJ77_14700"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006407218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HMC46566.1"
                     /translation="RRGLKVLVGGMCETDFSGYPDCRDDTMKALQVALNLGMDSRFLL
                     ETPLMWLDKADTWRLAEQLGGEALVELVRVETHTCYVGERSELHEWGFGCGQCPACKL
                     RKRGYEAYKSGEQVTTEPV"
BASE COUNT          599 a         1039 c          994 g          710 t
ORIGIN      
        1 tacttacgcg ttcgtgaaca ttgggatggt gagcgggata ttgccggtgg tcggcgtacc
       61 gttgccgttc atgagttacg gtggaaccgc gctgacaacg ctcggtgtcg cggtcgggct
      121 catcatgagc gtgtcacgac aaaagcggct gatgaaaggc tagcgttttt cgacggatcg
      181 cgttgttgaa gcaaagccca cgatgatgtt ttcatcgtgg gctttttgtt ttattgcggc
      241 cgttcgtgtg cgagttccgc gctgagttgc tggaacttca gcttcgcagc aggatcgccc
      301 tgggctgctg ccgccgcgta atacgcgcgt gccacgttga tgttcttttg cacgccatcg
      361 ccgccgcgtt cgtaaaacga tccggccacg tattgcgcgg tcatgtcgcc gccttcggcc
      421 gccttcttgt accagacgaa ggcttgcgcg ttgtcgcgag gcgtgccgcg gccatcgagg
      481 aactggttgg ccagcgcgag ctccgccagg acatggccct ggttcgccgc ccgcaagaac
      541 cagcggtgcg cctcggccgg atcacgttcg acaaattcgc cgtcgtcgaa catcttcccg
      601 tacacgtact gcgcttgcgt catgttggca tcggcggctt tgcgcaacca cttcttgcct
      661 tcgtccactt ctgccgagcc gccttcgccg ttcaccagca tcatcgcgta attgaattcg
      721 gcgagacggc tgcccttctg cgctgcatgc agaaactcgg agcgcgctac gctgagattg
      781 ccagcgttgt agtcggcgac agcgttttgc gtcgccatgt cactgccctt gacggtctgc
      841 gcacttgccc cgctgcatgc catcaccaac gctactgata ctgcgcccaa tattccgggt
      901 ttcatgccct cgcctcctgc aacgcctgtc gcgtcgcttt caacagccaa ccgacatccg
      961 ccgataacgc gatgaccttc acacccgctt ctgcatatga acgcgcactc gcgacatcca
     1021 gcgcaaagat gccgctcgcg atgcccgctt gtttcgcggt atcgataatt ttcgtgattg
     1081 cctgcaggac gtcgggatgc ttggtatcgc cgagatgacc gagactcgcg gccagatcgg
     1141 cgggcccaat gaacaagcaa tcgacgcccg gcgtggccgc gatcgcttcc acattcgcca
     1201 gcgcctgctc ggattcgatc tgcacgatcg tcgatatctg cgcgttcgcc gaactcacgt
     1261 aatcgcgccg gacgccgtac gcagctgcgc gcacggcacc ggccgcgccg cgcaggccat
     1321 cgcgggcatc ggcgttcgga tactgcgtga gacgcacgac gtgcgccgcc tcttccgctg
     1381 tttcaacgtt cgggaacatc agggtgcgcg cgcccgcgtc gagcacgcgc ttaaccagcc
     1441 agccttcatg cgccggcacg cggacgatcg gttcggtcgg caagtgcgcg gcggcaatcg
     1501 cacgaagttg cgcgacgacg tcgtggctat cgttcggcga atgctccatg tcgatacaca
     1561 gccagtcgaa gcctgcgtgc gccacggctt cggccacgtc cgcgctgccg agcgacagcc
     1621 acaggccgta caaggtgccg gtttcggtga aacgctgttt gagaaggttg gtgtaggtgc
     1681 tcatcgcgtg gtccttgata gatcgcacgc ggcgggatgg ctggcaggca tgtctcgctc
     1741 caattgggct atgtcgctgg aatgcgccgc aacaaaacgt gcggcttgtc caaagatcat
     1801 accgtgacaa aagagcgctg gcaggagcgc tgtcccgagc cctggagacc gaaaccgtga
     1861 agcgtcagac gccttcgacg tccgcccagc aattgggggt ttcgtacaga cgcacgcgct
     1921 tcagcttcag atcgacgccg tagtggtcgt tgtagacgcc ggagagaatc cggaacgcct
     1981 cggccgcgag attttcgacg gttggaatgc ggtcgagcac gacggtcttg tggtcggcca
     2041 tcgtatcgag aaagcttcgc acgacttcgt cgcgtgcata gacgataaac gcgtggtccc
     2101 acttgttgac cagatgttcc attgccagcg ccttgacgtc agcgaagtcc atcaccatgc
     2161 cgcgatccgg cgcgccttcc gtttcgacga gttcgccttg cagcgtgatt tccagcacat
     2221 accgatgacc gtgcaggtta cggcactggc tgcggtgatc ggggatgcgg tggcctgcat
     2281 cgaattcgag ttttcgggtg atcgtctgca cgtctgctca gctaggggct tgattcgcgt
     2341 taggggatgt tcaggtactt gtgcgtctgc atggacaggc gccattgtgg atgccgcttg
     2401 caccagtcga tagcgagctt cgtattgatg tcgcgcgatg gaccatccat gggttgcacg
     2461 aggaaatact cgaagtcgag tttggcgtaa tcggccagcg gctgattgtc ttgcggcacc
     2521 acgaccttca actcgttgcc cttcgtcacg accagcggcg cgccggcttt cgggctcacg
     2581 caaatccagt cgatactgtc cagcaccggc agcgatccgt tcgtttcgat cgccatttcg
     2641 aagccggctg catgcagggc atcgacgaaa ggcgggtcga tttgcaacat gggctcgccg
     2701 cctgtgcaga ccacgaactt gtgcgcttcg ccttccggcc attgcgacgc gatcatggca
     2761 acgaggtctg caggcgtacg atatttgccg ccgttctcgc catccgtgcc gacgaaatcc
     2821 gtgtcgcaaa actggcagac tgcgtccgcg cgatcttcct cgcgacccga ccagagattg
     2881 cagccggcga agcggcagaa cacagccgga cggccggcgt ttgcgccctc gccctgcaac
     2941 gtgtagaaaa tttcctttac tgcgtacgtc atgatcagac cggttcggtg gtgacttgct
     3001 cacccgactt gtaggcttcg tagccgcgct tgcgcagctt gcacgccggg cattggccgc
     3061 aaccaaaacc ccattcatgc aactcagaac gctcgccgac ataacacgtg tgtgtctcga
     3121 cgcgcaccag ttcaacgagt gcctcgccac ctagctgttc cgccaggcgc caggtatcgg
     3181 ctttatcgag ccacatcagc ggcgtctcga gcaggaagcg gctgtccatg ccgagattga
     3241 gggcgacttg cagcgccttc atggtgtcgt cgcggcaatc gggatagcca gagaaatccg
     3301 tttcgcacat accgccgaca agcaccttca gacctcgcct gt
//
LOCUS       DATGBK010001051         2881 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_150959, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001051 DATGBK010000000
VERSION     DATGBK010001051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150959"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..405
                     /locus_tag="VKJ77_14705"
     CDS             <1..405
                     /locus_tag="VKJ77_14705"
                     /inference="COORDINATES: protein motif:HMM:NF023950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3734 domain-containing protein"
                     /protein_id="HMC46567.1"
                     /translation="PRNMNEVLWRTKQIEYASRTDYHLKSVATKVQLRQAMQSLKVRN
                     APEAVAVPDDPVLRTRRLDIVHIIYRPGPDQIPESDAEFSRDSIAERRRAGYADLKGA
                     IAKAPWLTEKLPAHLGVLVHRVENGQVTSVPS"
     gene            644..1114
                     /locus_tag="VKJ77_14710"
     CDS             644..1114
                     /locus_tag="VKJ77_14710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HMC46568.1"
                     /translation="MKRAWALFCILAWSAILGGCGKDGSRNATQEAGASASQPLVQPG
                     QAASNTPAASGAQERSALVTVTKAQLPKEAAETLGLIKAGGPFPFGEDGVLFRNSAVL
                     LPQHPRGYYHAYTVRTPGSADRGQRRIVCGGPRRQTGDCYYTDDYYVSFKRIAE"
     gene            complement(1480..2292)
                     /locus_tag="VKJ77_14715"
     CDS             complement(1480..2292)
                     /locus_tag="VKJ77_14715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46569.1"
                     /translation="MLTSLTPGCALEADETTSLAQGVVWQIDENHIDPHGNWDKLGVH
                     DLLVQWTAVDGLSFLPGAGLPMAGRVPDWTRIADERWARNVIVGLAGRFDEITARAQI
                     VDLIAQSVRLAAVRPPVHVAGWYFPVEIDPTWVDAAQLGPLLAALPRPLWVSVYDRAN
                     VGGRTLAKWLDTWLPKDVGVFFQDGCGVYARGPMTAREYADALSETLGKRRVRIIAEA
                     FRPQAGGGFRAATSAELLPQLVAYKGYRVYLFDGPHYVSAELVDALLKDLSR"
     gene            complement(2527..>2881)
                     /locus_tag="VKJ77_14720"
     CDS             complement(2527..>2881)
                     /locus_tag="VKJ77_14720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bacteriophage N4 adsorption protein A"
                     /protein_id="HMC46570.1"
                     /translation="DKPSWWTAQMYAEGGCYLNAATCYATTNIEGGHTFRIDSISPKL
                     TVFPYAVIGADYDSSIDHSIPAGAGVGVSARYWMRDSRYDEPRSYVDLSVQYRWHITG
                     DDRSRGLFFGAIYSY"
BASE COUNT          626 a          890 c          841 g          524 t
ORIGIN      
        1 ccccggaaca tgaatgaggt cctttggcgt acgaagcaaa tcgagtatgc cagccgaact
       61 gactaccacc tcaagtctgt tgcgaccaag gtccaattac gtcaggccat gcaatcgctg
      121 aaagtgcgaa atgccccgga agccgtcgcc gtgccggacg accccgtact gcgtacccgg
      181 cgactagaca tcgtgcatat catctatcgt ccgggccccg atcaaattcc cgagagcgac
      241 gcagaattct cacgcgattc aattgccgag cggcgacggg ccgggtacgc cgacttaaag
      301 ggggcgattg caaaggcgcc gtggttgacc gagaaattgc ccgcccatct cggtgtgctc
      361 gtccatcgcg tcgaaaatgg ccaggtgaca tcagtacctt cgtgaggcgg gttttggagc
      421 ctcactggca aaacttcgga tatggcagga gccgccagat ccaggacctc ggaaagccga
      481 tgctcaaccg acacattagc cggggcttaa gagcgtcttg gccgcagtcg ccccgaggaa
      541 cgacagacta tttccggccg aatattgatt cgctctgcca ttagcgatac ccttaaaccg
      601 gttgtgatcg tcgaatgcta gtcaacccgg agacaaccgt atcgtgaagc gagcgtgggc
      661 tttgttctgc atcctcgcct ggagcgcaat cctcggcgga tgcggcaagg atggatcccg
      721 aaacgctact caggaagcgg gcgcatccgc gagtcagccg ctggttcagc ctgggcaggc
      781 cgcgagcaac acacccgccg catcgggcgc gcaggagcgg agcgcgctgg tcactgtcac
      841 taaggcccag ttgccaaagg aagcagccga aacactgggt ctgatcaaag cgggcggccc
      901 tttccctttt ggcgaggatg gtgtcttgtt ccgcaacagc gcggtgttgc tgccgcagca
      961 tccgcgcggc tattaccacg catacacagt acgcacgcct ggctcggcgg atcgcgggca
     1021 gcgccgcatc gtatgtggcg gaccgcgcag gcagacgggc gactgctact acaccgacga
     1081 ttactacgtc agtttcaaac gcattgcaga ataacttgag ccaattaaaa ccgcccgggc
     1141 ctcctataaa gcagacgccg ggcgttgtgt tttcagaaac cgcgccgcga tggcacgatc
     1201 agtgacgttt gccgtatctg cagttgacat ctgctgcgat agtgtcgtga gcgacaggta
     1261 agaggctttt gcattgtcaa cacttggcag ctaggggctt acgccaataa gtatgggctt
     1321 gccgcgcggc cgcgatgcgg atcacccgat cggcatggaa ggtaaagaag tgcttgccca
     1381 gattaatcct aaccagcatg gcttcttgga tgatggattc tcagcgtcgt aaagaaagac
     1441 gccgcaagcg taactcgctc gtgggacggc gatggccatt taccgcgaca gatccttcag
     1501 aagcgcgtcg acgagttcgg cggaaacata atgcgggccg tcgaacaaat acacgcgata
     1561 ccccttgtaa gcgacaagtt gcggcaaaag ctccgccgac gtggcagccc ggaaacctcc
     1621 cccagcttgc gggcgaaacg cctcggcgat gatccgcacg cgcctcttgc ccagcgtctc
     1681 cgacagtgcg tccgcgtatt cccgcgccgt catcggtcct cgtgcataca cgccgcatcc
     1741 gtcctggaaa aatacgccga catccttcgg cagccaggta tcgagccact tcgcaagggt
     1801 cctgccaccg acattggcgc ggtcataaac actgacccac agtggccgtg gcaacgcagc
     1861 gagcaatggc ccgagttgtg cggcatcgac ccacgtggga tcgatttcga ccggaaagta
     1921 ccagccagcc acatgcaccg gcggacggac tgccgcgagc cgcaccgact gtgcgatcag
     1981 atccacgatc tgcgcccgcg cggtgatctc gtcgaaacgg cctgccagcc ccacgatcac
     2041 attgcgcgcc cagcgctcat cggcgatgcg cgtccagtcg ggcacccgtc ctgccatcgg
     2101 caagccggcg ccgggcaaga aagacagacc gtcaacagcc gtccactgca cgagcagatc
     2161 gtgcacgccg agcttgtccc agttgccatg cggatcaata tgattctcgt cgatctgcca
     2221 gacgaccccc tgggccaacg atgtcgtttc atccgcttcg agcgcacagc ccggcgtgag
     2281 cgacgtgagc atcgtgagca aggtcgcgcc catcaggcgc cggcgcgtgc cgtcgggttc
     2341 atcgggatct ttgccggcca tgccgtgggc agtgtaatgt tcatcaggca tacggacccg
     2401 gtttttgagg tgggtatcac ggtggtcgaa accataacgt acggcatccg atcaactccg
     2461 attgaatcac acaaggcgca agacgcaccg gcaggcgcat tttcatgtgg atacctgcaa
     2521 cgtgaatcag taggaataga tggcgccgaa gaacaagccg cgggagcgat cgtcgccagt
     2581 aatgtgccag cgatattgca ctgacagatc aacatatgaa cgcggctcgt cgtacctgct
     2641 gtcgcgcatc caatagcgcg ccgacacccc cacgccagcg ccggccggaa tactgtgatc
     2701 gatcgacgag tcgtaatccg cgccgatcac cgcatacgga aacacggtca gcttcgggct
     2761 gatcgaatcg atacggaacg tatggccgcc ttcgatgttg gtcgtcgcgt agcaagtcgc
     2821 cgcgttcagg taacagccgc cttccgcgta catctgcgcg gtccaccacg acggcttgtc
     2881 g
//
LOCUS       DATGBK010001052         1500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_105108, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001052 DATGBK010000000
VERSION     DATGBK010001052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105108"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..799
                     /locus_tag="VKJ77_14725"
     CDS             11..799
                     /locus_tag="VKJ77_14725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010812610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HMC46571.1"
                     /translation="MKAADRHRAILDLVLTRDANVEQLSAALGVSEATVRRDLTMLAK
                     ERRLVRTYGGATALVGAHEPEASLEERKSTQREQKEVIAQAAALHVKDGDTVLLDGGT
                     TCAALARHLSAHRDLHVVTNNLLAVMTLANVPGMRITLIGGDLRASSMSTLGPLAELV
                     LSRLSVDLAFLGADGVAADFGLCEASAEQAYLKDCIIRRAASVVVLADADKLGRARQQ
                     HWTPLERDWRLITTTLADEFRLAPFRALERVVVEVAPMGVGQVL"
     gene            complement(871..>1500)
                     /locus_tag="VKJ77_14730"
     CDS             complement(871..>1500)
                     /locus_tag="VKJ77_14730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
                     /protein_id="HMC46572.1"
                     /translation="WMRPSLCDDALRLGRILAGLTPEESEVFGLVALMEIQASRIHAR
                     THANGRPVLLMDQDRSRWDPLLIRRGLAALERSEALNGARGPYALQGALAACHARARR
                     AEDTDWAQIVALYDALAMVAPSPVVELNRSVAVGMAFGPAAGLEIVDELGSNAVLKNY
                     HWLPSVRGDLLAKLGRREEARVEFERAAAMTRNVREKELLLERVAEMKG"
BASE COUNT          264 a          507 c          455 g          274 t
ORIGIN      
        1 gcattcatcg atgaaagcag ccgaccgtca ccgcgccatc ctcgatctcg tcctcacccg
       61 cgacgccaac gtagagcagt tgagcgcggc gctgggggta tcggaggcaa cggtgcggcg
      121 cgacctcact atgctcgcga aggagcgccg tctcgtgcgt acatatggcg gcgcgactgc
      181 gctggtcggt gcgcatgagc cggaagcgtc gctggaggaa cgcaagtcga cgcagcgtga
      241 acagaaggaa gtgattgcgc aggctgccgc gctgcatgtg aaggatggcg acacggtgct
      301 gctcgacggc ggcacgactt gcgccgcgct tgcgcgtcat ttgagtgcgc atcgggactt
      361 gcatgtggtg accaacaacc tgttggcagt gatgacgctt gccaatgtgc ccggcatgcg
      421 gattacgttg attggcggtg atctgcgggc atcgagcatg agcacgctcg ggccactggc
      481 cgaactcgtg ctgagccgct tgagcgtgga tctcgcgttt ctcggcgcgg atggcgtggc
      541 cgcagatttt ggtttatgcg aggccagcgc ggaacaggct tatctgaagg actgcattat
      601 tcgccgggcg gcgagtgtgg tggtgctggc cgatgccgac aagctcgggc gcgcacggca
      661 acagcactgg acgccgcttg agcgcgactg gcgtttgatc accaccaccc tcgccgatga
      721 attcaggctc gcgccgttcc gggcgctgga acgggtcgtg gtcgaagttg cgcctatggg
      781 ggtgggacag gttttgtagg gacgttgggt tctatgcgat tccagtttcg cctcggctag
      841 cttgccgccg ggtaagccca cttcattccc tcaccccttc atctccgcca cccgctcaag
      901 caacaactcc ttctcccgca cattacgtgt catcgccgcc gcacgttcga attccacccg
      961 cgcctcctcc cgacggccca gcttcgcaag caaatcaccg cgcacgctcg gcagccagtg
     1021 atagttcttc agcactgcgt tcgaccccag ctcgtcgact atctccaacc ccgctgccgg
     1081 gccgaacgcc atccccaccg ccaccgagcg gtttaactcc accaccggcg aaggcgccac
     1141 cattgccagc gcgtcgtaga gcgcgacgat ctgcgcccag tcagtatctt cagcccgccg
     1201 tgcccgcgca tggcaagccg ccagcgcacc ctgtaacgca taaggcccgc gcgccccgtt
     1261 cagcgcctct gaccgctcca atgccgcgag gccgcgtcgg atcagcaacg ggtcccatcg
     1321 gctgcggtcc tggtccatca acaacaccgg ccgcccgttc gcatgggttc gtgcatgaat
     1381 gcgggaggcc tgtatctcca tcaatgcaac cagcccgaat acctcgctct cctcaggcgt
     1441 caaccccgcc agaatccgcc cgagacgcaa cgcatcgtcg cagagcgatg gccgcatcca
//
LOCUS       DATGBK010001053         4634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_81958, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001053 DATGBK010000000
VERSION     DATGBK010001053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4634
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81958"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2021)
                     /locus_tag="VKJ77_14735"
     CDS             complement(<1..2021)
                     /locus_tag="VKJ77_14735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC46573.1"
                     /translation="MNAPDLTLVSDDSIALADGFARRIGGLSKRLQGDAANVRWAQRA
                     AFAVSRATTQGHVCIALDALAQRYGETAGKVHAALLASGVVCDGREAAADLLPLVIDS
                     SRRIYLARYFDYERRLARALVERAQVSANAPDPAELKARVGRYFAESKNDDDTIDWQR
                     VAALVALSGRLTIVSGGPGTGKTTTVVGVLACLLDENPALRIALAAPTGKAAQRMQEA
                     LVERSNMLPPELAARLPRTSFTLQRLLGTQANGRFRHHRDNPLPFDVIVIDEASMIDV
                     ALAAHLLEAVAPGARLVMLGDKDQLAAVEAGAVFAELSARPVFSDAGAERIAAALSMP
                     AERFIAALPSDRDDDADDQATLLEPEPLWIDEPGYLIPDHGDEAYGDYNALAGLPEVD
                     WHPVEHVESDRTAASPLTDCVVWLQRNYRFGLDSDIGRLSVAIRRGSVDDALAALTLD
                     SQDNLAKAALLIDDAGAHLSERTLARLNAGFEPYARTLAETLEAGAGAAPLFDALNRF
                     RILAATRHGPRGVDEINARVSAWVRAAASVTLGAGAQWFAGRPVIVTRNDYALGVFNG
                     DIGIALPAPGGAMQVCFRMADGTLRMLSPAALPPHDTAFALTVHKSQGSEFDHAALVL
                     PSAFGRMLSRELVYTAITRARSRIDVIGSTDVFAQAVRTPTRRDSGLAAR"
     gene            complement(2018..>4634)
                     /locus_tag="VKJ77_14740"
     CDS             complement(2018..>4634)
                     /locus_tag="VKJ77_14740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HMC46574.1"
                     /translation="DDLLSNLYQALVANPWLADALRARYPAALIDEFQDTDPLQFAIF
                     NSIFAPHGPLFLVGDPKQAIYSFRAADLHTYLRARKQASARYTLAVNQRSTAPIIDAC
                     NRIFGTNPAAFILDGLTYQPVRAGTRERKPFNDNTASAAYSDTADFCVWMLPQGDSAL
                     SKTNANRQAAEACSAEIVRLLRGAQNGEVTIGDKPLSPGQIAVLVQTHRQGSLVKRVL
                     ASWGVGSVELAQASVFGTFDAEQIERLLAAIDTPGDLRRLRAALATDWLGLDAAALWN
                     MEHSEAVEGSAAADAMSWVERFSRYRMLWHERGFAVMWRTLARELLIAQRLVVGPDGE
                     RRLTNVNHLAELIQARGAVQPGIAPTLRWLAAQRAEQGGGEDAQLRLESDRNLVQIVT
                     VHKSKGLEYAVVFCPFLNDGALRDPPSTGLPDAREYHDDGAAILHYGYTDEEGERASG
                     LATREQAAERARLVYVALTRAVYRCYLVGGVYLIGKSAKESRRSVLNWLVAGTGQEFF
                     DWLAEPPEEDDVIGSWQALATGAISVEPLPVIDGREPLIVNRDAGFTPQPRTSRRVLR
                     DSWRTASFSSMIAAGAREESNQPQLTDERPDHDGRIDAIAALTLVTPVETTLPPIQLH
                     TDDILLFPRGPSAGECLHRMYELADFTDSGKWPEAIKDALREHPITVSASDVLSANLP
                     AMMARLLADTVATELVPGMRLDTIPTKRRMNELEFLFPAESLDFTALRRVLVAHGFPD
                     VALEAGTLRGFVKGFIDLIVEHEGRFWIVDWKSNHLGLTPADYGEQSLDAAMASHSYH
                     LQALFYTVALHRYLRLRLRDYGFERHIGGYLYLFVRGVRPDWRDGDRPAGVHVGKPSL
                     ELIEAIDRLMQGVAA"
BASE COUNT          888 a         1514 c         1424 g          808 t
ORIGIN      
        1 cgcgcggcca gacccgagtc acgccgcgta ggtgtacgga cggcctgcgc gaagacgtcc
       61 gtcgagccga tcacgtctat gcggctacgc gcccgcgtga tcgccgtata aaccagttcc
      121 cgcgacaaca tgcggccaaa cgcgctcggc aataccagcg cggcatgatc gaattccgag
      181 ccctgcgatt tgtggaccgt cagcgcaaat gccgtgtcgt ggggtggcaa cgcagcggga
      241 gagagcatcc gtaacgtgcc atcggccatg cgaaagcaga cctgcatggc accgcccggc
      301 gccggcagcg cgataccgat atcgccgttg aacacgccca acgcgtagtc gttgcgcgtc
      361 acgatcaccg gccgccccgc gaaccattga gcgcccgcgc ccagcgtgac tgatgcagca
      421 gcccggaccc acgccgatac cctcgcgttg atttcatcga caccacgcgg cccgtgacgc
      481 gtcgcggcaa ggatgcgaaa gcggttgagc gcatcgaaaa gcggtgctgc cccggctccc
      541 gcttcgagcg tttcggcaag cgttcgcgcg tacggttcga aaccggcgtt caggcgcgcc
      601 agcgtgcgct cggagagatg agctcccgca tcgtcgataa gcaacgccgc tttcgccagg
      661 ttgtcctggc tatcgagcgt caaggcggca agcgcgtcgt caacggaacc gcgacggatg
      721 gcgactgaca acctgccaat atccgaatcc aggccgaacc gataatttcg ctgcaaccac
      781 acgacgcaat cggtcaacgg actcgctgcg gttcgatcgg actcgacatg ctccaccgga
      841 tgccagtcga cttcgggcaa gccggccaat gcgttgtaat cgccgtaggc ttcgtcgccg
      901 tggtccggga tcaggtaacc gggttcgtcg atccacaggg gctcgggttc gagcagcgtg
      961 gcttgatcat cagcgtcatc atcacggtcg ctcggcaacg cggcgatgaa ccgctccgcc
     1021 ggcatcgaca gcgccgcagc gatccgctcc gcgcctgcat cgctgaaaac cggccgcgcg
     1081 ctcagttcag cgaacacagc gcctgcttcc acggcggcaa gttgatcctt gtcgccaagc
     1141 atcacgagtc gcgcaccggg cgcgaccgct tcgagcagat gcgcggccag cgcgacgtcg
     1201 atcatcgatg cctcgtcgat cacgatcaca tcaaacggca gcggattgtc gcgatgatgc
     1261 cggaagcgcc cgttcgcctg cgtgccaagc agacgctgca gcgtgaacga cgtgcgcggc
     1321 aaacgcgcgg ccagctccgg cggcaacata ttggagcgtt cgaccagtgc ctcttgcatg
     1381 cgctgcgccg ccttgcccgt gggcgccgcg agcgcgatgc gcaaagccgg gttttcgtcg
     1441 agcaggcaag cgagcacgcc gacgaccgtc gttgtcttgc ccgttcccgg ccctccgctc
     1501 acgatggtga gacgccctga caacgcgacg agcgcggcca cgcgttgcca gtcgatagtg
     1561 tcatcgtcgt tctttgactc ggcgaaataa cgccctacgc gcgctttcaa ttcggccgga
     1621 tcgggcgcat tagccgacac ctgggcgcgt tcgaccagcg cccgcgcgag ccgccgttcg
     1681 tagtcgaaat accgggcgag atagatacgc cggctggaat cgataacaag aggcagcagg
     1741 tccgcagcag cttcccggcc gtcacacacc acgccgctcg ccagcaatgc ggcgtgtacc
     1801 ttgccggcag tttcgccata ccgctgcgcg agtgcatcga gcgcgataca cacgtgccct
     1861 tgtgtagtcg cgcggcttac tgcaaacgcc gcgcgctgtg cccagcgtac gttggcggcg
     1921 tctccttgaa ggcgcttcga taacccgcct atccggcgcg cgaatccgtc agcgagtgca
     1981 atgctgtcat cggagacaag agtcaggtcg ggcgcgttca tgcggcaact ccttgcatca
     2041 gtcgatcgat tgcctcgatc agttccagcg atggcttgcc cacatgcaca cccgctggcc
     2101 tgtcaccatc gcgccagtcg ggtcgtacgc cccgcacgaa caaatacaaa taaccgccga
     2161 tgtgccgctc aaacccgtag tcgcgcaacc gcaaacgcag atatcgatgc agcgcgaccg
     2221 tgtaaaagag tgcctgcaaa tgataagaat gcgaggccat tgcggcgtcg agagattgct
     2281 cgccgtaatc ggcgggtgtc agcccaagat gattcgactt ccagtcgacg atccagaaac
     2341 gcccttcatg ctcgacgatc aagtcgatga accccttgac gaaaccgcgc aaggttccgg
     2401 cttccagcgc gacgtcgggg aagccatgcg cgacgagcac gcgtcgcaag gccgtgaaat
     2461 ccagcgattc tgccgggaac aggaactcga gttcattcat gcgccgcttg gtggggatgg
     2521 tgtcgaggcg catgccgggt acgagttcgg tcgcaactgt atcggctagc agacgcgcca
     2581 tcatcgcggg caggttggca gacaaaacgt ctgacgctga aacggtaatg ggatgttcgc
     2641 gcaacgcgtc cttgatcgct tcgggccact ttccggagtc cgtgaaatcg gcgagttcat
     2701 acatgcggtg caggcactcg cccgccgacg ggccgcgcgg gaataagagg atatcgtcgg
     2761 tatggagttg gatcggaggc aacgtcgttt caacgggcgt aaccagtgta agcgccgcta
     2821 ttgcgtcgat acgcccgtcg tggtcgggac gttcgtcggt gagctgcggc tgattcgatt
     2881 cctcacgtgc gccggccgcg atcatggaac tgaaactggc ggtccgccag ctgtcacgca
     2941 acacgcgacg actggttcgc ggttgcggcg tgaatcccgc gtcgcggttc acaatgagcg
     3001 gttcacgccc gtcgatcaca ggcaagggtt cgacggagat ggcgcctgtt gcaagcgctt
     3061 gccagcttcc gatcacatcg tcttcttcgg gtggctcagc gagccagtcg aagaactcct
     3121 ggccagtgcc cgcgaccagc cagttcagca cgctgcgccg cgattccttc gctgatttac
     3181 cgatcagata cacgcctccg accaggtaac accggtacac cgcacgcgta agcgccacgt
     3241 acacgagccg cgcgcgttcg gcggcctgct cgcgcgtggc gagtccggat gcgcgctcgc
     3301 cttcttcgtc ggtgtagccg tagtgcagta tggccgctcc gtcgtcgtgg tattcgcggg
     3361 catcgggcag tcctgtggac ggcgggtcgc gcaacgcgcc atcgttcagg aacggacaga
     3421 acacgaccgc gtattccagg cccttcgatt tgtgcaccgt gacgatctgc acgagattgc
     3481 gatcggactc aagccgcaac tgcgcatctt ctccgccgcc ctgctctgca cgctgcgcgg
     3541 ctagccagcg cagcgtgggc gcaatgccag gttgaaccgc gccacgcgcc tggatcaact
     3601 cagccagatg attgacgttg gtcaggcggc gctcgccgtc cggaccgaca acaagacgct
     3661 gcgcgatcag cagctcgcgc gcgagcgtgc gccacatcac cgcgaaaccg cgctcatgcc
     3721 acagcatccg atagcgcgag aaacgctcga cccagctcat ggcatcggcc gcggcggagc
     3781 cttctaccgc ttcgctatgc tccatgttcc acaacgcggc ggcatcgagc ccgagccagt
     3841 ccgttgcaag tgccgcgcgc aagcggcgca aatcgccggg ggtatcgatg gcggccagca
     3901 atcgctcgat ctgctccgca tcgaacgtac cgaacaccga tgcttgcgcc agttccacgc
     3961 tgcccactcc ccagcttgcg agcacccgct tgacgagact tccctgccga tgcgtctgca
     4021 caaggaccgc aatctggccg ggcgacagag gcttgtcgcc gatcgttact tcgccgtttt
     4081 gagcgccgcg caacaaccgc acgatctctg ccgagcaggc ctccgccgcc tgacggttgg
     4141 cgttcgtttt cgacagcgcc gaatcgcctt gcggcaacat ccacacgcag aaatcggcgg
     4201 tatcggaata ggcggctgac gctgtgttgt cgttgaacgg cttgcgctcg cgcgtgcctg
     4261 ctcgcaccgg ctggtaagtc agtccatcga ggatgaacgc cgccggattc gtgccgaaaa
     4321 tgcggttgca ggcatcgatg atcggtgcag tcgagcgctg gttgaccgca agcgtatatc
     4381 tcgccgatgc ctgcttgcgc gccctcaaat acgtatgcag gtcggcggca cgaaaactgt
     4441 agatggcctg cttcggatcg ccgaccagaa acaacggccc atgcggcgcg aagatgctgt
     4501 tgaagatggc gaactgcagc ggatccgtgt cctggaattc atcgatcaac gcagccggat
     4561 aacgtgcccg aagtgcatcg gcaagccacg ggttggcgac cagcgcctga tacaggttgg
     4621 acagcaagtc gtcg
//
LOCUS       DATGBK010001054         2061 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313477, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001054 DATGBK010000000
VERSION     DATGBK010001054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2061
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313477"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..1797)
                     /gene="gshA"
                     /locus_tag="VKJ77_14745"
     CDS             complement(178..1797)
                     /gene="gshA"
                     /locus_tag="VKJ77_14745"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011353600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HMC46575.1"
                     /translation="MANTNFSSPSDSAFLRRLSALTSGPQSAALRQGLRGIEKESLRV
                     TRNGTLATTPHPRTFGSALTHPLITTDYSEALIELITPAENDVARTLEQLDDLHRFAY
                     AHLGSELLWNDSMPGELPADQDIPIGWYGTSNIGMLKHVYRRGLSLRYGRTMQCIAGI
                     HYNYSLHEDVWRAWAALDNRSAVPLVDFQSERYFALIRNFRRTSWLLMYLFGASPALN
                     QQFLRDRPNALETFDATTRYLPYATSLRMSDLGYTNNPAQSALLPSYDTLDGYLDVLA
                     KAVSEPYPAYEAMGTQRDGEWVQINTNVLQIENEFYSTIRPKRVTQPGERPLHALSSR
                     GVQYIEVRCLDIDPFEPTGISLETTRFMDAYLLYCAIEDSPLLPRAANEEANENFARI
                     TKEGRKPGLTLARDGREVPMQGWADSLLDAIEPVAQALDALHGIDEHMTALKAQRARL
                     ADVSLTPSARVLETMRERHQSFNEFALELSAKHADYFRGRPLSAQAEREMAALAAKSL
                     DDQARIEREEVGSFDAFVGAYRAYTLNRISV"
BASE COUNT          389 a          579 c          674 g          419 t
ORIGIN      
        1 aatcagtctg gtatagctga tacgtcgcta ttttcagacc cgacccacgg acgagcgttt
       61 ccacgcgttg cgcactgttg caaaacaagt aagggttgcc gctgctgagg ctgtgcggcg
      121 aggaaaaagc tgctggattg caatgggcgt cggctttgga gccggcgccc acccggctca
      181 aacgctaata cggttcaacg tgtaagcacg ataagcaccg acgaaggcat cgaacgaacc
      241 aacttcttca cgctcgattc ttgcctgatc gtccagcgac tttgcagcaa gcgccgccat
      301 ttcgcgctcg gcttgcgcgc tgagcgggcg gccacggaag taatcggcat gctttgcgct
      361 cagttcgagc gcaaattcgt tgaagctttg atgccgctcg cgcatggttt cgagcacgcg
      421 ggcggacggc gtcagcgaga catcggccaa tcgtgcgcgc tgggccttca aggcggtcat
      481 gtgttcatcg ataccatgca gcgcgtcaag tgcctgcgcg accggttcga tggcgtcgag
      541 caatgaatcc gcccagcctt gcatgggaac ttcgcggcca tcgcgtgcca gcgtcaggcc
      601 gggcttacgc ccttccttcg tgatgcgtgc gaagttctcg ttggcttctt cgttggcggc
      661 gcgcggcaaa agcgggctgt cttcgattgc gcaatacagc agatacgcgt ccatgaaacg
      721 cgtggtttcc aacgaaatcc cggtcggctc gaacgggtcg atatcgaggc aacgcacttc
      781 aatgtattgg acgccacgcg acgacaacgc atgcaacggc cgctcgccag gttgcgtaac
      841 gcgctttggc cggatggtcg agtaaaactc gttctcgatc tgcagcacgt tcgtgttgat
      901 ctgcacccac tcgccgtcgc gctgcgtgcc catggcttca tacgccggat acggctcgct
      961 gaccgctttc gcgagaacgt cgaggtaacc gtcgagcgtg tcgtagcttg gcagcagggc
     1021 agattgcgcc gggttgttcg tgtagccgag atcgctcatc cgcaggctgg tggcgtacgg
     1081 cagataacgt gtcgtggcgt cgaaggtctc gagcgcattc ggccggtcgc gcaggaactg
     1141 ctggttgagc gcaggcgaag cgccgaacaa atacatcagc agccagcttg tgcggcgaaa
     1201 attccggatc agcgcgaaat accgttcgga ctggaaatcg acgagcggca ctgcgctgcg
     1261 gttatcgagc gcggcccacg cgcgccacac gtcttcgtgc agcgaatagt tgtagtgaat
     1321 cccggcgatg cattgcatgg tgcggccgta tcgcagcgac aaaccgcgcc ggtacacgtg
     1381 cttcaacatg ccgatattcg atgtgccata ccagccgatc gggatgtcct gatcggcggg
     1441 aagctcgccg ggcatggagt cgttccagag caattcgctg ccgaggtggg cgtaggcgaa
     1501 gcgatgcaag tcgtccagtt gctcgagcgt gcgcgcgacg tcgttctcag ccggcgtaat
     1561 cagttcgatc agcgcttcgg agtagtcggt ggtgatgagc ggatgcgtga gcgcggagcc
     1621 gaatgtgcgc ggatgcggcg tggtggcaag cgtaccgttg cgcgtcaccc gcaggctttc
     1681 cttctcgatg ccgcgcagcc cctggcgcaa cgcagcgctt tgcgggccgc tggtcagcgc
     1741 ggataagcgg cgcaggaagg cgctgtcaga cggagatgag aaattcgtat ttgccattgc
     1801 tgcgacggtt gcgtgtcaga cgccgaacgg aatgcgccga accagatttt tgggtagcgg
     1861 gcactttaac atctcagtgt aagacgtgct tgaacccttg ccggataagg gtttgcgcga
     1921 attcgagtgg tttgacgcgc gagttgtagc ggcaggtttc gatgggcgat gcgggacttc
     1981 cgattcggct gcgtaagcgg cagtagcaaa cgggggcggc cggggcgggc tttaggatcc
     2041 gctttgggcc cacgtagcga c
//
LOCUS       DATGBK010001055         2553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_105138, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001055 DATGBK010000000
VERSION     DATGBK010001055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105138"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..1075)
                     /locus_tag="VKJ77_14750"
     CDS             complement(101..1075)
                     /locus_tag="VKJ77_14750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005014392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46576.1"
                     /translation="MSGWLIRRIAQAAFVVLLMTLIVFIGLHAIGNPIDILIGQDVDQ
                     VDRARIIAQLGLDQPLWKQYLAFLAGAMHGDLGNSFVYNEPAIRLILQRLPATLELAV
                     SALLLALVIGIPLGLFAGLHPRNPLSKMLMTGSIVGFSLPTFWVGLMLIMLFSVKLGW
                     LPASGRGATASLFGVQWSWLTLDGLRHLILPALNLSLFKVSLVLRLTSAGVREVMPME
                     HVRFARAKGLSPTRIVLVHILRNTLIPLVTVIGLEFGSTIAFAVVTETVFSWPGAGKL
                     ILDSINALDRPVILSYLIVVVCMFVSLNLFVDILYKFLDPRVRLEGTR"
     gene            complement(1072..2529)
                     /locus_tag="VKJ77_14755"
     CDS             complement(1072..2529)
                     /locus_tag="VKJ77_14755"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020832216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HMC46577.1"
                     /translation="MSSTPPTGLAALEARLAEDLSLLELPAREWVPGKTHNGSEVLDV
                     AVIGGGMAGLAASAALKLLGVRATIFDRSPQGLEGPWATTARMETLRSPKQLTGPALG
                     LPALTFRAWFEAQFGTPAWQALDKIDRLQWMQYLIWYRRVLALDVRNGHTIEAVTPRA
                     DGLVVLSIRTQDRRIEVYARRVVLATGRDGLGGPALPGFVEGLPRNRWAHSSDTTDYT
                     TLVGKRVAVVGGGSSAMDSAATALEAGAASVDLLIRRSDLPRVNKGKGAGNPGLTHGH
                     QTLPDEWKWKIRHYINTVQVPPPRGSTLRVSRHPNARFNLGCPVLSVESTENGLSIHT
                     PKGTFSADFLVVSTGFKVDWSARPEFAAFGSYIRTWADRYTPPPGDEDAELSDSPDVG
                     PAFEFLEKSPGICPGLSRIHCFCYPASLSQGAVSGDIPAISTGAKRLAQGLSSLLYSE
                     DIEQHYAALEAYAEPELYGDEWQPAEAPPQYAEDQ"
BASE COUNT          533 a          769 c          810 g          441 t
ORIGIN      
        1 gaacgtccaa agtccgcgac gagctgacgc cacggcgact gacggcgttt gagcacgccg
       61 cgcacgggct tttccgtctc gggaaccagc ggagtcgtgc tcatcgcgta ccctccagcc
      121 gcacgcgcgg gtcaaggaac ttgtagagga tatcgacgaa caggttcagc gagacgaaca
      181 tgcagacgac cacgatcagg tacgacagga tcaccggacg atcgagcgcg ttgatgctgt
      241 cgagtatcag cttgccggcg cccggccacg agaacacggt ctcggtcacg accgcgaatg
      301 cgatggtcga accgaattcc aggccgatca ccgtgacaag cggaatcagc gtattgcgca
      361 ggatgtgaac gagcacgatg cgcgtgggcg acaaaccctt ggcgcgggcg aaacgcacat
      421 gttccatcgg catgacttcg cgcacgccgg cacttgtgag acgcaagacc agcgacactt
      481 tgaagagcga caggttgagc gcgggcagga tcaggtgacg caggccgtcg agcgtaagcc
      541 acgaccactg cacaccgaac aggctcgcag tcgcgccgcg tccgctggcg ggcagccatc
      601 cgagcttcac gctgaacaac atgatgagca tcaggccgac ccagaacgta ggcagggaga
      661 agccgacaat actgcccgtc atcagcatct tcgagagcgg attgcgtgga tgcagtcccg
      721 cgaaaagccc cagcggaatc ccaatcacca gcgccagcag cagcgccgaa acagcgagtt
      781 ccaaggtggc gggaaggcgt tgcaggatca ggcggatcgc gggctcgtta taaacgaaac
      841 tgttgccgag gtcgccatgc atggcgccgg cgaggaaggc cagatactgt ttccagagcg
      901 gctggtcgag gccgagttga gcgatgatgc gcgcccggtc gacctgatcg acgtcctgtc
      961 cgatgagaat atcaatcgga ttgccgatcg catgcagacc gatgaacacg atcagcgtca
     1021 tcagcagcac gacgaacgct gcctgcgcga ttcggcgaat gagccagccg ctcattggtc
     1081 ctccgcatac tggggcggcg cctcggccgg ttgccattca tcaccgtaga gttccggttc
     1141 ggcgtacgct tccagcgccg cgtaatgctg ctcaatgtct tcgctataca gcaagcttga
     1201 taagccttgg gcaagccgtt ttgcgcctgt gctgatcgcg ggaatgtcgc cggagaccgc
     1261 gccttgcgag agcgacgcgg gatagcagaa gcagtggatg cgcgacaagc cggggcatat
     1321 gccgggggat ttctcgagga attcaaacgc gggtccgaca tcgggcgagt cggacagctc
     1381 ggcgtcttca tcgcctggag gcggcgtgta gcggtcggcc caggtgcgga tataggagcc
     1441 aaacgcggcg aattccgggc gtgcggacca gtcgaccttg aagcccgtgg agaccacgag
     1501 gaagtcggcc gagaaggtgc ctttgggcgt gtggatcgaa agaccgttct ctgtgctttc
     1561 aaccgataac accgggcatc caaggttaaa acgtgcgttc ggatgacgcg atacccgcag
     1621 cgtactgcca cgcggcggag gtacctgcac cgtattgatg taatggcgga tcttccattt
     1681 ccattcatcg ggcagcgttt ggtggccgtg agtcagacct ggatttccgg ctcccttgcc
     1741 cttattgacg cgtggaaggt cagaacgcct aatcagcaga tcgacgcttg cggcgcccgc
     1801 ttcgagcgcg gtagcagcgc tgtccatggc agaagaaccg ccaccgacca cggccacgcg
     1861 cttgcctaca agcgtggtgt aatcggtggt atcggatgaa tgcgcccagc gattacgcgg
     1921 caatccttca acaaaccccg gcaatgcagg cccgcccaat ccgtcgcgtc cggtagcgag
     1981 cacgacgcgt cgcgcataga cctcgatgcg acgatcctgc gttcgtatgc ttaatacgac
     2041 gagaccatcg gcgcgtggcg tcactgcttc aatagtgtgg ccgttgcgga catcgagtgc
     2101 cagcacgcgg cgataccaga tcagatattg catccattgc agacggtcga tcttgtcgag
     2161 cgcttgccag gctggcgtgc cgaattgagc ctcgaaccat gcgcgaaacg tcaacgcagg
     2221 taaccctaaa gcggggcccg tcagctgctt aggcgagcgt aacgtttcca tgcgggcggt
     2281 cgtggcccaa gggccttcca gtccctgcgg cgagcggtca aagattgttg cccgcacacc
     2341 cagcaacttg agcgcggcgg acgcggccag ccccgccatg ccaccgccga tcaccgccac
     2401 gtccagcact tcactgccgt tatgcgtctt gccgggcacc cattcacgcg cgggcaattc
     2461 gagcagggac aggtcttccg cgaggcgcgc ttcgagcgcc gcaaggcccg tagggggtgt
     2521 cgatgacatg tttttgtcga ggctcacgtg gcg
//
LOCUS       DATGBK010001056         1868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_198121, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001056 DATGBK010000000
VERSION     DATGBK010001056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198121"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..637)
                     /locus_tag="VKJ77_14760"
     CDS             complement(<1..637)
                     /locus_tag="VKJ77_14760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46578.1"
                     /translation="MKLSKFMRPALMFSALAFFSAAASAQLKVGIDLSSTGPAAAIGI
                     TSKNAMLMWPKTIAGQQAEYIILDDGSDPGAAVRNIRKLITEDKVDVIVGPNITPAAL
                     AALDPVAEYQTPMITLIGSASVVEPQEGKKVWAFKMAQTDRAMADLMTRTMVNRSVKT
                     VGFIGFADSYGDSWFNEFSKFAELRHIKVVASERFNRTDASVTGQILKLMAA"
     gene            complement(772..1713)
                     /locus_tag="VKJ77_14765"
     CDS             complement(772..1713)
                     /locus_tag="VKJ77_14765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CysB family HTH-type transcriptional regulator"
                     /protein_id="HMC46579.1"
                     /translation="MNLHQFRFVREAVRQNYNLTEAAKALFTSQPGVSKAIIELEDEL
                     GVEIFTRHGKRVRSLTEPGRIILASVEKILQEVESLKRVGKDYAAQDQGNLVIAATHT
                     QARYSLPNAIAEFKKRFPKVHLSILQGSPTQVAEMVIHDQADIAIATEAIANYKELVS
                     LPCFQWHHVAVVQPDHPLLERKLLTLDDLAQYPIITYDNAFAGRSKINQAFALRHLTP
                     DIVLEAIDADVIKTYVELGLGVGILADIAFNPERDKHLRAMPVGHLFGTNVTRLALKQ
                     GAYLRSYVYTLVELLSPSMNRKLIEQALSGEHETYEL"
BASE COUNT          375 a          545 c          525 g          423 t
ORIGIN      
        1 tcgccgccat cagcttgaga atttgcccgg tcacactcgc gtcggtgcga ttgaaccgct
       61 cgctcgcgac caccttgata tgccgcaatt ccgcgaactt cgagaactcg ttgaaccagc
      121 tatcgccgta actatcggcg aaaccgatga aaccgaccgt cttcacactc cggttgacca
      181 tcgtgcgggt catcaagtcg gccatggctc ggtccgtctg ggccatcttg aacgcccaca
      241 ccttcttgcc ttcctgcggc tcgaccaccg atgccgagcc gatcagcgtg atcatcggcg
      301 tctggtattc ggccaccgga tcgagcgccg caagcgctgc cggcgtgatg ttcggtccga
      361 cgatcacatc gaccttgtct tctgtaatca gcttgcggat attgcgcacg gccgcgcccg
      421 gatcggagcc atcgtcgaga atgatgtatt ccgcttgttg acccgcaatc gtcttcggcc
      481 acatcagcat ggcgttcttg ctcgtgatgc cgatggcggc agccggaccg gtgcttgaca
      541 aatcgatacc gactttcagt tgcgcactgg ccgctgcact gaaaaacgcg agcgcgctga
      601 acatcagcgc cgggcgcatg aacttcgaca acttcattgg atggtctccg cgaagaggtg
      661 tggtttaaaa atgctgaagt gtggggctga caaaaatcgc gcggcgcgag tttcgactcg
      721 ggtttcgacg cgaccgttgc ccgcgtcttg ccgcaacccg gtctcggtca atcaaagctc
      781 gtaggtttcg tgctcgcccg acagcgcctg ctcgatcagc ttgcggttca tggaaggcga
      841 gagcagttcg acgagcgtgt acacgtagct acgcaaatac gcgccttgtt tcaaagcgag
      901 ccgcgtgaca ttcgtgccga acagatggcc gacgggcatc gcgcgaaggt gtttatcgcg
      961 ttcggggtta aacgcgatat ccgcgagaat gcccacgccc agacccagct cgacgtaggt
     1021 cttgatcacg tcggcatcaa tggcttccag cacgatatcg ggcgtcaggt ggcgcagcgc
     1081 gaacgcctgg ttgattttcg agcggccggc aaacgcgttg tcgtaggtga tgatcgggta
     1141 ttgcgcgagg tcgtcgagtg tcagcagctt gcgctcgagc agcggatggt ccggctgcac
     1201 cacggccacg tgatgccact gaaagcaggg cagcgacacc agttccttat agttggcgat
     1261 cgcttccgtg gcgatggcga tatccgcctg gtcatgtatg accatttcgg cgacctgcgt
     1321 cgggctgcct tgcagaattg aaaggtgcac cttcggaaag cgcttcttga attccgcgat
     1381 ggcattcggc agcgaatacc gcgcctgcgt atgcgtggcc gcgatcacga gattgccctg
     1441 atcctgcgcc gcgtaatctt taccgacacg cttcaggctt tcgacttcct gcaagatttt
     1501 ttccaccgat gccaggataa ttcgacccgg ctccgtcagc gaacgaaccc gtttgccgtg
     1561 acgcgtgaag atctcgaccc cgagttcatc ctccagctcg atgatcgctt tcgatacccc
     1621 cggctgcgac gtgaacagcg ctttggcagc ttcggtgagg ttgtagttct ggcggacggc
     1681 ctcgcgcacg aagcggaact ggtgcagatt catatataac ccaccggcat atcaaagtaa
     1741 tttatcagtc gtttgcaata tataggaagt ttattactat cgagccaatt tttccaatat
     1801 cgatatctgt atttgtcata agcaaatgaa cgcattgtcc gaacggcgtt ccaggcaatg
     1861 actctact
//
LOCUS       DATGBK010001057         1744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_105149, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001057 DATGBK010000000
VERSION     DATGBK010001057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105149"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VKJ77_14770"
     CDS             complement(<1..183)
                     /locus_tag="VKJ77_14770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46580.1"
                     /translation="MNARVQSLTDMEARPSGVRFLCVCSDAGRRAWLARALGTLGALE
                     HVPFDAVALMPKISSLG"
     gene            complement(304..1635)
                     /locus_tag="VKJ77_14775"
     CDS             complement(304..1635)
                     /locus_tag="VKJ77_14775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II and III secretion system protein family
                     protein"
                     /protein_id="HMC46581.1"
                     /translation="MGRALQRVAVGDPSVADVLWLKSSAGANGGLLLVGKSAGRTEVM
                     IWERGQSAPQTYTINVTTLAARELLGSDTPAVNVLGNTAVVTGSAASMESHQRALAVA
                     RESVARTAGSSNASSASAGKDSGGQSGNSSDSSATGGGRGGDAKGGDILDASTIATSP
                     VVQVDVKVVEFSKAVLKEAGFNLFKQNNAFAFGTFAPSALTSYTGGATTNLQVASASP
                     ISSAFNLIVNLGSRGIFANLSLLESNNLARVLAEPTLVALSGPIASFLAGGEIPVPVP
                     QSLGTISIVYKPYGIGLTVTPTVLGANRIALKVAPEASQLDFQHALTINGISVPAITT
                     RRADTTVELGDGESFVIGGLIDRETSSNVDKVPMLGDLPVIGAFFKTLQYAQNDRELV
                     IIVTPHLVSPIAKGAVLPGTPGEQSERRDGPVWRSFIGGFASREAVPGFSK"
BASE COUNT          322 a          597 c          510 g          315 t
ORIGIN      
        1 gcccagcgac gagatcttcg gcatcagtgc aacagcatcg aacggcacgt gttcaagcgc
       61 acccagcgtg cccagcgcac gcgcgagcca ggcccggcgc cccgcatccg agcagacgca
      121 caggaaccgg acgcccgagg ggcgcgcttc catgtcagtc aaggattgaa ctcttgcgtt
      181 cattgccgct ttctcctgcc acatcggcgc gtgccatgct gccagcacac ctcgcccttc
      241 cagacggact tgcgcgcgtc ttcgctacct gcccgcagct ttccttgtca gacaggacga
      301 ccatcatttc gagaatcccg gcaccgcttc acgcgatgca aaaccaccga tgaacgagcg
      361 ccacacaggt ccgtcgcgtc gctcggactg ctcgccaggc gtgcccggaa gcaccgcccc
      421 cttcgcaatc ggcgagacca gatgcggcgt cacgatgatc accagctcac gatcgttttg
      481 cgcgtactgc agggtcttga agaacgcacc gatgaccggc aaatcaccca gcatgggcac
      541 cttgtcgacg ttcgacgacg tctcgcgatc gatcaagccg ccaatcacga aactttcgcc
      601 atcaccgagt tcgacggtcg tatccgctcg ccgcgtagtg atcgccggca cggaaatgcc
      661 gttgatggtc agcgcgtgct ggaagtcgag ctggcttgct tccggcgcga ccttcagcgc
      721 gatccggttg gcaccgagca cggtcggggt caccgtcagc ccgataccgt agggcttgta
      781 gacaatgctg atcgtgccga gcgactgcgg cacgggtacc ggaatctcgc cgccggcgag
      841 gaagctcgcg attggtcccg acaacgcaac gagcgtcggt tcggccagca cgcgcgccag
      901 gttgttcgat tcgagcaggc tgaggttcgc gaagataccg cgagaaccca agttcacgat
      961 caggttgaag gcgctgctga taggcgatgc agaggcaacc tgtaaattcg tggtcgcgcc
     1021 gcctgtatac gatgtcagcg ctgacggggc gaaggtgccg aacgcaaacg cgttgttctg
     1081 tttgaaaaga ttgaagcccg cttccttcag cacggccttg ctgaactcga ccaccttcac
     1141 atcgacctgg acaacgggac tggttgctat cgtcgatgca tcgaggatat cgccgccctt
     1201 cgcatcgccc cccctgccgc ccccggttgc agacgaatcg gatgagtttc cgctttgccc
     1261 tcccgaatcc ttgccggccg atgctgacga cgcattggac gaccccgcgg tcctcgcgac
     1321 cgactccctc gctacagcca atgcgcgctg atgtgattcc atgctcgcgg cagacccggt
     1381 gaccaccgct gtgttgccaa gcacgttgac cgcgggcgta tcgctgccga gcagctcacg
     1441 tgcggccagc gtggtgacgt tgatcgtgta ggtctgaggc gcgctctgac cgcgctccca
     1501 gatcatcacc tcagtgcgtc ccgcgctttt gccgaccagc aacaaaccgc cgtttgcgcc
     1561 tgcgctgctc ttaagccaaa gcacgtccgc gaccgagggg tctcccacgg ctacgcgctg
     1621 caacgcgcgt cccatcgcga tctgcttctg ggcgccgacg acgatgtcga taacccgcga
     1681 cgccgcggag tcggtcgcat ctgccgcagc tctggcagct ttcgcaccgg cgagcggagc
     1741 cacc
//
LOCUS       DATGBK010001058         2135 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_174300, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001058 DATGBK010000000
VERSION     DATGBK010001058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174300"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..1116
                     /gene="hrcA"
                     /locus_tag="VKJ77_14780"
     CDS             97..1116
                     /gene="hrcA"
                     /locus_tag="VKJ77_14780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013696719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HMC46582.1"
                     /translation="MLDPRAQTLLKTLIERYIAEGQPVGSRTLSRYSGLELSPATIRN
                     VMSDLEDLGLVVSPHTSAGRIPTPRGYRLFVDTMLTVETTDDEAMTSAVKIKLQGGEP
                     AKIVAAAASVLSSLSQFAGVILTPRRSHMFKQIEFMRLSDKRILLIIVTPEGDVQNRI
                     MATQRDYSPSQLTEASNYINANFAGLSFNEVRRRLREEIDALRGDMTSLMQAAVAASV
                     DETDQGDTLLISGERNLLEVADLSSDMARLRKLFDVFDQKTSLLQLLDVSSHAQGVQI
                     FIGGESNLVPIEEMSVVTAPYEVNGKIVGTLGVIGPTRMAYNRVIPIVDITARLLSLS
                     LSSQQ"
     gene            1313..>2135
                     /gene="hemH"
                     /locus_tag="VKJ77_14785"
     CDS             1313..>2135
                     /gene="hemH"
                     /locus_tag="VKJ77_14785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HMC46583.1"
                     /translation="MRYDLELPSQPSASHRVAVLLINLGTPDAPTPKAVRKYLAQFLS
                     DPRVVEIPALAWQVILRLAILPFRGRASAKKYAQVWLPEGSPLRVHTEKQVEALRRLF
                     MVNDYHVIVDYAMRYGTPGIPAMMNQLKLEGAERVLLVPMYPQYSSSTTATAFDDAFN
                     ALRRVRNQPELRTIRQYADHPAYIGALAEQVRDYWRHHGQPDFAAGDRLVLSFHGVPK
                     RTMDLGDPYHDQCQLTGSLLMAALGLSPVECRVTFQSRFGPSEWLQPYTAPTLAEL"
BASE COUNT          409 a          678 c          612 g          436 t
ORIGIN      
        1 tgaataaatg acgggtgaat gacaaaataa cgtcaatcgt cgtcgcacta tttgctgcgc
       61 tcgctgtttc cttacacgtt gagctaaaat ttcccgatgc tagacccacg tgcccagacc
      121 ctcctcaaga cgctgatcga gcgctatatc gccgaaggtc agccggtcgg ttcccgcacg
      181 ctgtcgcgtt attccggact cgagctcagc ccggccacca tccgcaacgt catgtcggac
      241 ctggaggacc tcgggctggt ggtcagcccg catacgtccg cggggcggat tcccacgccg
      301 cgtggctacc ggctcttcgt ggacaccatg ctcaccgtcg aaactactga cgacgaagcc
      361 atgacgtccg ccgtcaagat caagctgcag ggcggcgagc cggcgaagat tgtggccgcc
      421 gcggcgagcg tgctgtcgag cctgtcgcag ttcgccggcg tcattctcac gccgcgccgc
      481 agccacatgt tcaagcagat cgagttcatg cgcctgtctg ataaacgcat cctgctgatc
      541 atagtgacgc cggaaggcga cgtgcagaac cgcatcatgg cgacccagcg tgactattcg
      601 ccgtcgcagc tcaccgaggc gtcgaactat atcaacgcga atttcgccgg gttgtccttc
      661 aacgaagtac gccgccgact gcgcgaggaa atcgacgcgt tgcgcggcga catgacctcg
      721 ctgatgcagg cagcggtggc cgcgagcgtt gacgaaacgg atcaaggcga caccctgctg
      781 atttccggcg agcgcaacct gctggaagtg gcggatcttt cctccgacat ggcgcggctg
      841 cgcaagctct tcgacgtgtt cgaccaaaag acgagtctcc ttcaattact cgatgtctcg
      901 agccacgcgc aaggcgtgca gatttttatc ggcggcgagt cgaatctcgt accgatcgag
      961 gaaatgagcg ttgttacggc gccctatgaa gtgaacggga agatcgtggg cacgctgggc
     1021 gtgatcggac ccacccggat ggcatacaac cgcgtaattc ccattgttga tatcactgcg
     1081 cgcttgctat ccctctcgct cagtagccag caatagtgcc aataagcgtg cgataagcca
     1141 tctgccggtc cgctccggcc cgcaaaatgc tgcgaatccc tccggcagac aacccatctt
     1201 gccttgcccc agccccgtgc accactcggc cgttcggtcg atgttgcgtt ccgaaacccg
     1261 ccgctataat gggtttcact tacttacatg ggcttcgcag cctctttcct ttatgcgcta
     1321 cgacctcgag ttgccttcgc agccttccgc ttcgcatcgc gttgcggtgc tgctgatcaa
     1381 cctcggcacg ccggacgcgc ccacgcccaa ggctgtgcgc aagtacctcg cgcagttctt
     1441 gtcggacccg cgcgtggtgg aaattcctgc gctcgcgtgg caagtcatct tgcgattggc
     1501 catcctgccg tttcgcggcc gtgcgtcggc aaagaaatat gcccaggtat ggctgcccga
     1561 aggctcaccg ctgcgggtcc atacggaaaa gcaggttgag gcgttgcggc gcttgttcat
     1621 ggtgaacgac tatcacgtga tcgtggacta cgccatgcgc tacggcacgc ccggcattcc
     1681 ggccatgatg aatcaactca agctggaagg cgccgagcgc gtactgctcg tacccatgta
     1741 tccgcaatat tcgtcgtcga ccacagctac cgcgttcgac gacgccttca atgccctgcg
     1801 gcgcgtgcgc aatcagccgg aactacgcac catccgccaa tatgcggacc atccggctta
     1861 cattggcgcg ctggccgagc aggtgcggga ctattggcgg catcacggtc agccggactt
     1921 cgcggcaggg gaccggctgg tgctgagttt ccacggcgtg ccaaagcgca ccatggatct
     1981 tggcgatcca taccatgatc agtgtcaact gaccggctcg ttgctcatgg cggccctcgg
     2041 tttgtcgccg gtcgaatgcc gggtgacatt ccagtcgcgt tttgggcctt cagaatggct
     2101 gcagccttat acagcaccca cgctggcaga actcg
//
LOCUS       DATGBK010001059         1684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290631, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001059 DATGBK010000000
VERSION     DATGBK010001059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290631"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..743)
                     /locus_tag="VKJ77_14790"
     CDS             complement(<1..743)
                     /locus_tag="VKJ77_14790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011657844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46584.1"
                     /translation="MKHNQLRALAAIAQHGSIRAAARSVFLSQPALTKAIRELEQDLG
                     VPLVSRSARGAQLTEYGQAVYARAKLILAEMQHVRDDVLQLSGKTGGSVACAVTPLVS
                     LKFLPRAIGSFRRRMPATQLIVQEGFLQGALPRLRDGSLDFVIAILDESKLAPDFACQ
                     RLLEAEVIITARQGNPFAQCTSIAELQNADWVLNTTPESIGQSIQSFFVEHGLRSPRV
                     VVECSSFSATFSMSINSDMISCCPKSFMET"
     gene            1008..>1684
                     /locus_tag="VKJ77_14795"
     CDS             1008..>1684
                     /locus_tag="VKJ77_14795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006403394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46585.1"
                     /translation="MKSTPTDTLLCTPEEARPSSHTTQQLIVATTIGNAFEFFDLTVY
                     SFFAVLLGKLFFPVASSEQQLLLSVAAFGIGFIARPLGGVVFGVLADRLGRVTAMNLT
                     LIAMALGTGMIGVMPTYAQIGIAAPLMILTARILQGFSAGGEVGVATALLAERASSER
                     RGFVTSWQFASQGAAALAGSLVGFLLSHYLSTSALESWGWRIPFLTGILIAPLGLYLR
                     SRIDDEEA"
BASE COUNT          341 a          515 c          481 g          347 t
ORIGIN      
        1 gtctccatga agcttttcgg gcagcaggaa atcatgtcgc tgttgattga catcgagaac
       61 gtcgcgctga acgacgagca ctcgaccacc acgcgcggag agcgcagacc atgctcaacg
      121 aaaaaactct ggatcgactg accgatgctc tcgggtgtcg tattcaacac ccagtcggca
      181 ttctgcaact ccgcaatcga cgtgcattgc gcaaacgggt tgccctgtcg cgccgtaatg
      241 attacttccg cttccaacag tctctggcag gcgaagtcgg gcgcgagttt ggattcgtcc
      301 agtatcgcaa tcacgaaatc gagggaacca tctcgcaagc gaggcaatgc gccttggaga
      361 aagccttcct gaacaatcag ttgcgtagcg ggcatgcgcc gtcgaaacga gccgatcgcg
      421 cgcggcagga atttgagcga cacgagcggt gtcaccgcgc acgccaccga cccgcccgtt
      481 ttgcccgaga gctgcaaaac atcatcccgg acgtgttgca tttcggccag gatcagcttg
      541 gctcgcgcat agaccgcctg cccgtattcg gtgagttgcg cgccacgcgc actgcgcgaa
      601 accagcggta cgcccagatc ttgctcgagt tcgcggatcg ccttcgtcag cgcgggctgc
      661 gacaggaaga ccgatcttgc ggcagctcgg atgcttccgt gctgtgcaat cgcagcaagt
      721 gcacgcaatt ggttgtgttt cacgaaagaa tcgacggcgg ttaatgaggc gcgagcaagc
      781 tcgagattat tcctctatgt tacctgcggc gaaaaaagcc gcctaccccg ggcaaacact
      841 gcgcgccaga atccattgaa catcgctttc gcggctgata accggacgtt atcgcgatca
      901 gaaaaagcac gcttgccgcg tttttttgtg tgcttagact ggccttaatg caggacaagc
      961 gcgacggacg cacgcatgca tccgcaatca aatttggaga cacgtcaatg aagtcaacgc
     1021 cgacggacac gttgctatgt acgccagaag aagccaggcc atcttcccat acgacgcagc
     1081 aactcattgt tgctacaacg atcggcaacg ccttcgaatt cttcgatctg accgtgtaca
     1141 gcttcttcgc cgtgttgctc ggaaagctgt tctttccggt cgcgtcgagc gaacagcaac
     1201 tattgctctc ggttgccgcc ttcggcatcg gctttatcgc gcggccgctc ggcggcgttg
     1261 tattcggcgt gctcgcagac cggctcggcc gcgtcaccgc catgaacctc acgctgatcg
     1321 cgatggcgct tggcaccggg atgatcggcg tgatgccgac ttacgcgcaa atcggcattg
     1381 cggcgccgct catgattctc accgcccgta tcctccaagg cttttcggcg ggaggtgaag
     1441 tgggcgtcgc cacagcgttg ctcgccgagc gcgcgagctc cgaacgccgc gggtttgtga
     1501 caagctggca gttcgcaagc cagggcgctg ccgcgctcgc gggatcgctg gtcggatttt
     1561 tactctcgca ctacctgagc acgagcgccc tcgaatcctg gggctggcgt atcccgtttc
     1621 ttacgggcat cctgatcgcg ccgctcggtc tctaccttcg ttcacgcatc gacgacgaag
     1681 aagc
//
LOCUS       DATGBK010001060         1905 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290646, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001060 DATGBK010000000
VERSION     DATGBK010001060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290646"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..583
                     /locus_tag="VKJ77_14800"
     CDS             <1..583
                     /locus_tag="VKJ77_14800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013434637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HMC46586.1"
                     /translation="TCSAPVHPHHPERGTREFPFSRELWIEREDFQEVPKKGYFRLFP
                     GNKVRLKYGFVVECTGADKDEHGNITAVHCTYFPDSRSGTEGANGYKVKGTIHWVSAE
                     GAYEAEVRIYDRLFKEPQPGAGGAEFLDALNPDSKRIVRAYLEPGARQANAEDRYQFE
                     RHGYFVADRIDSKPGMPVFNRIVSLRDSWTKPA"
     gene            705..1598
                     /locus_tag="VKJ77_14805"
     CDS             705..1598
                     /locus_tag="VKJ77_14805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46587.1"
                     /translation="MSCAFALLIAAQTAFAGTVDLSSPTLRKIAENNTIVLGVRESSV
                     PFSYLDANGRPVGYSQAIALKIVDEVRLRLQTPRLAVSTVVLTSANRLSYVVNHQIDL
                     ECGSTAHIRDREQLVSFSNSFFSYGIRMVVKRKSGIRNYADLAGKTVSTTAGTSDEQL
                     LRELSLNRKLDLRIFSAKDHAEAFDAVKTGRAVAFVMDDPLLYGKIAQEGPAQNEYMV
                     TGDPLAHESYACMMRKGDPVFKKLADDVIAGLERSGEAEKLYDRWFMQGIPPDNINLR
                     FPLSPEMRALFANPNDNASDD"
     gene            complement(1662..>1905)
                     /locus_tag="VKJ77_14810"
     CDS             complement(1662..>1905)
                     /locus_tag="VKJ77_14810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HMC46588.1"
                     /translation="VYRRDKDLHLFAVRVTDDEVKLEECICESYFPRRRDGEMIPEMD
                     AYRWVTPADVDQYASRSLARLFQTTLSLTELQQTLA"
BASE COUNT          409 a          580 c          548 g          368 t
ORIGIN      
        1 aacgtgcagc gcgccggtgc acccgcatca tcctgaacgc ggcacgcgcg aatttccgtt
       61 ctctcgggaa ttgtggatcg agcgcgagga cttccaggaa gtaccgaaga aaggctattt
      121 ccgtttgttc ccgggcaaca aggtgcggct gaagtacggc ttcgtcgtgg aatgcacagg
      181 cgcggacaag gacgagcacg gcaacatcac ggccgtgcat tgcacgtatt tccccgacag
      241 caggtctggc acggaaggcg caaacggcta taaggtcaag ggcaccattc actgggtcag
      301 cgcagaaggc gcgtatgaag ccgaagtacg aatctacgac cgcctcttca aagaaccgca
      361 acctggcgca ggcggcgcgg aatttcttga tgcgctgaac ccggactcga agcgcatcgt
      421 gcgcgcttat ctcgaaccgg gcgcacgcca ggcaaatgcc gaagatcgct accagtttga
      481 acgccacggc tatttcgtcg ctgaccgtat cgattcgaaa cccggcatgc cggtgtttaa
      541 tcgcatcgtc agcctgcgcg atagttggac caagccggct taaaaaagcc atcggcgcgt
      601 cccgccggac gctcgcacct gttgtggggg atgctttgca acgcaccttg ccaaggtcgt
      661 tcgtccgcgc gttgaacgtg ccgtgcaagt tacgcacgtc tcgcgtgtcg tgcgcgtttg
      721 cgctgctgat cgcggcgcaa acggcgttcg cgggcacagt cgacctgtcc tcgcctacgt
      781 tacgcaagat cgccgagaac aacaccatcg tcctcggtgt gcgcgagtcg tcagtcccct
      841 tctcctatct cgacgcgaac gggcggcccg tcggctattc gcaggccatt gcgctcaaga
      901 tcgtcgacga agtccgactc cgcttgcaaa caccccggct cgccgtgagc actgtggtcc
      961 tcacatcggc gaaccgattg tcgtatgtag tgaatcacca gatcgacctg gagtgcggat
     1021 cgaccgctca tattcgcgac cgggagcaac tggtctcgtt ctcgaacagc ttctttagct
     1081 acggcatccg gatggtggtg aagcgcaaat ccggcatccg caactacgcc gatctcgccg
     1141 gcaagacggt atcgaccaca gcgggtacgt ccgatgaaca gctcctgcgg gaactgtcgc
     1201 tgaatcggaa actcgatctg cggattttca gcgcgaaaga ccatgcagaa gctttcgatg
     1261 cagtgaaaac cggccgcgcc gtggcgttcg tgatggatga tccgttgctg tacggaaaga
     1321 tagcccagga aggtccggct caaaacgagt acatggtcac cggtgacccg ctcgcccacg
     1381 aatcctacgc atgcatgatg cgcaagggcg acccggtctt caagaaactt gcagatgacg
     1441 tgattgccgg cttggagcgc tcaggcgaag ccgaaaaact ctacgaccgg tggttcatgc
     1501 agggcatacc gcccgacaac atcaacttgc ggttccctct gtcgccagaa atgagagcgc
     1561 tgtttgccaa tccgaacgat aacgcctcgg atgactagca ttgaccaaac acccagcgtt
     1621 gattaatggc gcccccacgg cgcacgccca agccttccgg ctcaggcgag cgtctgttgc
     1681 agttcagtca gcgacagcgt ggtctgaaac aggcgcgcga ggctgcggct tgcgtactga
     1741 tcgacatcag ccggcgtgac ccatctgtac gcgtccattt cgggaatcat ctcgccgtcg
     1801 cggcgacgcg gaaaatacga ttcgcagatg cattcttcaa gcttcacttc gtcgtcggtc
     1861 actcgcaccg cgaacagatg cagatccttg tcccggcgat ataca
//
LOCUS       DATGBK010001061         2822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_12539, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001061 DATGBK010000000
VERSION     DATGBK010001061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2822
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12539"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1030)
                     /locus_tag="VKJ77_14815"
     CDS             complement(<1..1030)
                     /locus_tag="VKJ77_14815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC46589.1"
                     /translation="MADDARFSWEDPLLLDQQLSDEERMIRDAAYAYAQDKLQPRVLD
                     AFRNEHTDVAIFREMGELGLLGPTIPEQYGGPGLNYVSYGLIAREVERVDSGYRSMMS
                     VQSSLVMVPINAFGTEAQKQKYLPKLATGEWIGCFGLTEPNAGSDPASMTTRAKKVDG
                     GFSISGQKMWISNSPIADVFVVWAKLEEEGRDLIRGFILEKGWKGLSAPAIHGKVGLR
                     ASITGEIVMDEVFVPEENLMPNVSGLKGPFTCLNSARYGIAWGALGAAEACWHMARQY
                     TLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRN
                     SCGKALDIA"
     gene            1130..1966
                     /locus_tag="VKJ77_14820"
     CDS             1130..1966
                     /locus_tag="VKJ77_14820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC46590.1"
                     /translation="MPITSIRNSESSTPSDASAKLPNSSDRIDERKFVVALARGLEML
                     RAFRPGETLLGNRDFVDRTGLPKATVNRLAYTLTTLGYLRFDEPAGKYALDTGVLSLG
                     FALLAGADALELARPHMRVLAREIGAAVSLGCRDGLDMIYLETIRSETALTLGLAPGS
                     RLSMLTSSMGRAYLAVQEPDQREVLLEELGAAAVKNGEDGARLVKTAKEAIDDYARDG
                     CCYSFRDWHADVNAIAAPLRDIRNGRWLVLSSSGPASSMDEAYFRNIVAPKLRTLAAR
                     LA"
     gene            2108..2605
                     /locus_tag="VKJ77_14825"
     CDS             2108..2605
                     /locus_tag="VKJ77_14825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HMC46591.1"
                     /translation="MTGFSLDATDCRILSVLQEDGRISNLDLAERISLSPSACLRRMR
                     LLEEEGVIASYRACLDRERLGVELEAFVHVSMRNDQENWHEKFAAAVREWPEVVGAFV
                     VTGDTHYVLRVLAYNLKHYSDFILSKLYKAPGVIDIRSNIVLQTMKDEAGVPVALIDR
                     TGSVS"
     gene            complement(2636..>2822)
                     /locus_tag="VKJ77_14830"
     CDS             complement(2636..>2822)
                     /locus_tag="VKJ77_14830"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HMC46592.1"
                     /translation="TGMPVLDGALAWFECHNRSRYQEGDHVIFVGQVERCGVHENAAE
                     IAPLVFQAGQFHGLGSL"
BASE COUNT          558 a          826 c          846 g          592 t
ORIGIN      
        1 gtgcgatgtc gagcgccttg ccgcacgaat tgcgcttcat gatcgaggtg atctcgaccg
       61 ccgccgtgcc ctcgtccttc atgcggccga gtcgcagcac gccttgaagc cctagcgtga
      121 tttccgtctg catatcggca agtttctttt gaatcaactg gttggctgca agcggccggc
      181 cgaattgctt gcgatccagc gtgtattgcc gcgccatgtg ccagcacgct tcggctgcac
      241 cgagcgcgcc ccaggcaata ccgtagcgcg ccgaattcag gcaggtgaac gggcctttga
      301 ggccgctcac gttcggcatc aggttttctt ccgggacgaa gacctcgtcc atcacgatct
      361 caccggtaat cgatgcccgc aagccaacct tgccgtgaat ggccggtgcg ctcaagccct
      421 tccagccttt ctccaggatg aaaccgcgaa tcagatcgcg gccttcctct tccagctttg
      481 cccacacgac aaacacatcg gcgatgggcg aattcgagat ccacattttc tggccggaga
      541 tcgaaaaccc gccgtccacc tttttggcgc gcgttgtcat gctggccggg tcggaaccgg
      601 cgttgggctc ggtgagcccg aaacagccga tccattcgcc cgtggccagc ttcggcagat
      661 atttttgctt ttgcgcttcg gtgccgaatg cgttgatcgg caccatgacg agcgacgatt
      721 gcactgacat catcgaccgg tagcctgaat ccacgcgttc aacttcgcga gcgatcaggc
      781 catagctgac gtagttgagg ccgggaccgc cgtactgttc gggaatagtc ggaccaagca
      841 ggccgagttc gcccatctca cggaagatcg ccacgtccgt gtgttcgttg cggaacgcgt
      901 cgagcacgcg cggctgcaac ttgtcctgcg cgtaagcgta cgcggcgtcg cggatcatgc
      961 gttcttcgtc gctgagttgc tggtcgagca gcaacggatc ttcccagcta aaacgggcgt
     1021 catcggccat gttgtatctc ctgtttcctc tgttcctgat tttaggactt gactgatgtt
     1081 ccgctaagcg gaacaatgtt ttgcaaatca gaaccgagtc tagcatccga tgccaataac
     1141 ttccatccgg aattccgagt cgtcgacgcc gtccgatgct tccgcaaagt tgccaaattc
     1201 gtcagaccgg atcgatgagc gcaagtttgt cgtcgcgctg gcccgtggcc tggagatgct
     1261 gcgagcgttt cgtccgggcg agaccttgct gggcaatcgt gatttcgtcg atagaaccgg
     1321 cctgcccaaa gccaccgtca accgtcttgc gtacacgctg accacgctcg gttatctgcg
     1381 tttcgacgaa ccggctggca aatacgcgct cgacacgggc gtgctgtcgc tgggattcgc
     1441 tttgctggct ggggccgacg cgctcgaact cgcgcgcccg catatgcgcg tgctcgcgcg
     1501 agaaattggc gcggcggtgt cgttgggatg ccgcgatggg ctcgacatga tctatctgga
     1561 aaccatccgc agcgagacgg cgctgacgct tggtctggct cccggctccc ggctgtccat
     1621 gctgaccagc tcaatggggc gggcttatct ggcggtgcag gaaccggatc agcgggaggt
     1681 tttgctcgaa gaactcggcg cggcggcggt gaaaaatggc gaagacggcg cgcggctggt
     1741 gaagacggcc aaagaggcga ttgatgacta cgcgcgcgat ggctgttgtt attcgtttcg
     1801 cgattggcac gccgacgtga acgcgatcgc cgcgccttta cgcgatatcc ggaacgggcg
     1861 atggctggtg ctgagcagca gcgggccggc atcgtcgatg gacgaggcgt atttccgcaa
     1921 cattgttgcg cccaagctac ggacactggc cgcgcgactg gcgtgaagtg atgctgatta
     1981 agcccgaata gggcgcgttc atagccaaat caggtcgaaa tcggtcaaaa ggtgatttag
     2041 aaataacatc ccaaaaacac ggctcttaga acataattcg atgaaacagc cgcagggaga
     2101 ctaaaaaatg accgggttct cgctggacgc aacggattgc cgtattttgt cggtgctgca
     2161 agaagatggt cgcatcagca accttgatct ggctgagcgg atttcgcttt cgccgtcagc
     2221 gtgtctgcgc cgcatgcggc tgctcgagga agaaggggta atagcgagct atcgcgcgtg
     2281 tctggaccgg gaacggctcg gcgtggaact ggaggcgttc gtccatgtat ccatgcgcaa
     2341 cgaccaggaa aactggcacg agaaattcgc ggccgctgtg cgggaatggc cggaagtggt
     2401 gggtgcgttt gttgtgacag gcgacacgca ttacgtgctg cgcgtcctcg catacaatct
     2461 caagcactac tcggacttta tcctgagcaa gctttacaag gcgccgggtg tgatcgatat
     2521 ccgctcgaac atcgtgcttc agaccatgaa ggacgaagcg ggcgtgccgg tcgccctgat
     2581 cgaccgaacc ggtagcgtgt cttaacccaa gctcgtgaca agtcggacaa gcccgtcaca
     2641 gcgatccaag tccatgaaac tgccccgcct gaaacaccag cggggcaatt tccgctgcat
     2701 tctcgtgcac gccgcatcgc tccacctgac ccacaaagat cacgtgatcg ccttcctgat
     2761 aacggctacg gttgtggcat tcgaaccacg cgagcgcacc gtcgagcacc ggcatgccgg
     2821 tg
//
LOCUS       DATGBK010001062         1545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290652, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001062 DATGBK010000000
VERSION     DATGBK010001062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290652"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VKJ77_14835"
     CDS             <1..639
                     /locus_tag="VKJ77_14835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013234513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46593.1"
                     /translation="TGAFLLAAAGQLDGRRAATHWAWAGRLSALHPAVDVDADKIFIK
                     DGSIWTSAGVTAGIDLTLALIEEDFGHKVAIETARQLVMFMKRSGGQSQFSTPLVAQT
                     QASDRFAELHAWIAAHLDEDLRVERLAEQTGMTPRTFARTYAAKVGCTPARTVEAMRI
                     EAACRLLEETSDPLKRIAAASGHVDEQNLRRVFLRRMGITPSQHRERFSSYP"
     gene            815..1506
                     /locus_tag="VKJ77_14840"
                     /pseudo
     CDS             815..1506
                     /locus_tag="VKJ77_14840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011236212.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          306 a          457 c          494 g          288 t
ORIGIN      
        1 acgggcgcgt tcttgctggc ggcggcaggt caactggacg ggcgtcgcgc cgccacccac
       61 tgggcctggg cagggcgcct gagtgcgctg caccctgcgg tcgatgtgga cgccgacaag
      121 atctttatca aggacggctc gatctggacc tcggccggcg tgacggccgg gatcgacctg
      181 accctggctc tgatcgagga agactttggt cacaaggtgg ccattgaaac agcgcgccag
      241 ctggtgatgt tcatgaagcg ttcgggcggg cagtcgcagt tcagcacccc gctggtggcg
      301 caaacgcagg cgagcgaccg gttcgccgag cttcatgcct ggatcgccgc gcatctggac
      361 gaagacttgc gcgttgagcg gcttgccgag cagaccggca tgacgccgcg cacctttgcg
      421 cgcacctacg cggccaaggt gggatgcacg ccagcgagga ctgttgaagc gatgcgcatc
      481 gaagcggcct gccgtctgct cgaggaaacc agtgatccgc tcaagcgcat tgccgctgcg
      541 agcgggcatg tcgatgagca gaacctacgc cgcgtatttt tgcgccgcat gggcatcacg
      601 cctagccagc atagggaacg cttttcctcc tatccttaaa gcgcgcaggc cgtgccggcg
      661 atgcaaagtg tgagcacaaa cagggacgca tgaaatacac taccgcatgc catccgattt
      721 caattcgacc cagtccactc gtgcgtatgc gcccgcgctg acgcctgcgc agctggtgga
      781 tttggctggc aagctggagc gcgacaacgt caatttgcgc cgccagatcg catggttcca
      841 gcgccagatc tttggtcaga aaagcgagaa acgccatcct gagccagaat gtgttcaggg
      901 cattcttggt gtgggcttcg acgccattcc cgatacgcag ctgccggtca agaaaatggt
      961 ggtcgccgcc catgagcgca aggtgaagcc ggtcggcagt ggtgccgacg aatcgagctt
     1021 gttcttcgat gacaagcggg tgctgctgga agtgatcgtt ctgccaaacc cggacataga
     1081 acggcgctcg ccagatcagt acgaggtgat cggcgagaag gttgcacacc gactagcgca
     1141 gcggcccggc agctatgtca tgctcaaata cgtgcggccc ctgatcaagt gcaaagacac
     1201 gctggcgctc tcgtgcccgt ccgctcccgt cgggtgatcg acggcagtcg tgccgacgtc
     1261 agcttcgtgg ttggcatggt gatcgacaaa ttcgattgtc acttgccgtt gtaccgccag
     1321 caccgccggc tcgatgatgc cgggatccgc gtcagccggc cttggctaac gcaattgatg
     1381 caatcgacca tagcgctgct cgaaccaatc tatgaagcgc agttcgagtc gattcgggtc
     1441 agtcgtgtca aggcgatgga cgaggtgccg atcaaggccg gccgggcgag ccccgacaag
     1501 atgaagtaaa cctttttctg gtcgatctat ggcgagcgcg acgag
//
LOCUS       DATGBK010001063         3336 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313545, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001063 DATGBK010000000
VERSION     DATGBK010001063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313545"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..813)
                     /gene="msrP"
                     /locus_tag="VKJ77_14845"
     CDS             complement(<1..813)
                     /gene="msrP"
                     /locus_tag="VKJ77_14845"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009913838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016667 - oxidoreductase activity, acting
                     on a sulfur group of donors [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HMC46594.1"
                     /translation="MVMKHTRQLFGDDIARSEITPRAFFENRRRVLRAGGALAATGLI
                     GVNGEALATMTSPDAKGQKLSSATNTKFVALDKVTPFKDITSYNNFYEFGTDKADPAH
                     NAHTLRPRPWKISVEGEIKNAKVYDIDEIVKLAPLEERIYRLRCVEGWSMVIPWIGIP
                     LAEIIKRAQPTGNAKYVQFITLADPSQMPGLSDPILDWPYSEGLRMDEAMNPLALLTV
                     GLYGEVLPNQNGAPVRIVVPWKYGFKSAKSLVKIRFVEQQPKTSWSEYAPKEY"
     gene            complement(979..2181)
                     /gene="ccsB"
                     /locus_tag="VKJ77_14850"
     CDS             complement(979..2181)
                     /gene="ccsB"
                     /locus_tag="VKJ77_14850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HMC46595.1"
                     /translation="MDLTQASSHSTLAQQRAGKVPVDPDLFDERPFLKRLGVTDWLFA
                     LAMVAGAGFALYRYHPFMNYYDKLVLCCAVPVFVVLGWRWKPVRLLIACIAVMSLFSL
                     QLYHSDLARADTNFFLKYFLSSQSAILWMSALLVLATVFYWIGLISRSPTGGAIGSKM
                     TWAAVLMGFTGLMVRWYESYLIGSDVGHIPISNLYEVFVLFCLITSLFYLYYEQHYNT
                     RAMGAFVLLVISAAVGFLMWYSIARDAQQIQPLVPALQSWWMKIHVPANFIGYGSFAL
                     AAMVGVAYLVKERGILADRLPSLEVLDDVMYKSIAVGFAFFTIATILGALWAAEAWGG
                     YWSWDPKETWALIVWLNYAAWLHMRLMKGLRGSVAAWWALTGLLVTTFAFLGVNMFLS
                     GLHSYGKL"
     gene            complement(2186..>3336)
                     /locus_tag="VKJ77_14855"
     CDS             complement(2186..>3336)
                     /locus_tag="VKJ77_14855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HMC46596.1"
                     /translation="GGKGETVEFTDFRAINVENVTDGSGSIDTRGVGQTQTLKQAFDE
                     RLGSGAKTSKPTDLRNVGPSVQYKVRGTDGQAREFNNYMLPVDVQGQPMFLAGMRLSP
                     NDPFRYLRIPADEQSSIKQWMNLRAALETPAMRDEAARRFAKRSVPEANADLQKHLEE
                     SASRVLNLFAGADETGVAAVPGQPGAMLGGFQAIAGFIDKSVPKGEQEKAAGLLLRML
                     EGATWDLWQISRAQNGLPEAQPDAKNTQFVQSSINALSDSFLYGSPVFLQLDSFKQIQ
                     ASVFQLTRAPGKKVVYLGSLLLVFGIFSMFYVRERRLWFWLKDTPTGGTSVLMAMSTA
                     RRTIDFEKEFARTRDAIGAMLGVKSQPVTSSPETPADTKSTGSQDSTR"
BASE COUNT          710 a         1036 c          942 g          648 t
ORIGIN      
        1 gtactctttc ggcgcatatt cactccagct cgttttcggc tgttgctcga caaaacggat
       61 cttcaccagc gatttcgcac tcttgaagcc gtatttccag ggcaccacaa tacgcaccgg
      121 cgcgccgttc tgattcggca acacttcacc gtacaaaccg acggtcagca gcgccagcgg
      181 attcatcgcc tcgtccatgc gcagaccttc ggaatagggc cagtcgagaa tgggatcgga
      241 cagcccgggc atttgcgatg gatcggctag cgtgatgaac tgcacgtact tcgcgttgcc
      301 tgtcggctgc gcgcgcttga tgatttcggc cagcggaatg ccaatccacg gaatcaccat
      361 cgaccaccct tccacgcacc gcagccgata gatacgctcc tcgagcggcg cgagtttcac
      421 gatttcatcg atgtcataca ccttcgcgtt cttgatctcg ccttccaccg atatcttcca
      481 cggccgcggc cgcagcgtat gggcgttgtg cgccggatca gccttgtccg tgccgaactc
      541 gtagaagttg ttgtagctcg tgatgtcctt gaacggcgtc accttgtcca gggcgacgaa
      601 cttcgtgttc gtggccgagg agagcttctg accctttgca tcaggcgatg tcatcgtggc
      661 gagcgcttcg ccgttcacac cgatgaggcc cgtcgcggcc agcgccccgc cggcgcgcaa
      721 cacgcgccgg cggttctcga agaacgcgcg cggcgtgatt tcgctgcggg cgatgtcgtc
      781 gccgaaaagc tggcgtgtgt gtttcataac catttcgatg ctcctgaaat tcatgtcgcg
      841 gctcgcgtca acgtcgccgc tggtatagct atattcgtgg caaacaccga atcggtttca
      901 gctattccgt ccaggcaata aaaaaaccgc cagcaaatct tgcatggcgg ttttttagcc
      961 ggtgtttaac ggcagatgtt acagcttgcc gtagctatgc aggccggaga ggaacatgtt
     1021 cacgccgagg aacgcgaacg tggtgaccag caaaccggtc aatgcccacc acgcggccac
     1081 cgaaccacgc aggcccttca tcaggcgcat atgcagccag gcggcgtaat tcagccagac
     1141 gatcaatgcc cacgtttcct tcgggtccca actccagtag ccgccccacg cttcggcggc
     1201 ccacagcgca ccaagaatag tcgcgatggt gaaaaacgcg aaaccgaccg cgatcgactt
     1261 gtacatgacg tcgtcgagca cttcgagcga cggcaggcgg tccgccagaa tgccgcgttc
     1321 cttgaccaga taggcgaccc cgaccatggc tgccagcgca aagctgccat aaccgatgaa
     1381 attcgccggc acgtggattt tcatccacca gctttgcagc gcaggcacga gcggctggat
     1441 ctgctgagca tcgcgagcga tggaatacca catcaggaag cccacggcgg cgctgatcac
     1501 cagcaggacg aatgcgccca ttgcgcgggt gttgtagtgc tgctcgtagt acaaataaaa
     1561 cagcgacgta atcaggcaga acagcacgaa tacttcatac aggttcgaaa tggggatatg
     1621 gcccacgtcc gaaccgatca agtaagactc gtaccagcgc accatcaggc cggtgaagcc
     1681 catcaacact gcggcccagg tcatcttcga gccaatcgcg ccacccgtgg gcgatcgcga
     1741 aatcaagccg atccagtaga acaccgtggc caacacgagc agcgcgctca tccacaaaat
     1801 ggccgactga ctggacagga agtacttgag gaagaagttg gtgtcggcgc gggcgaggtc
     1861 cgagtgataa agctgcaacg aaaacaacga catcaccgcg atgcacgcaa tcagcagccg
     1921 caccggcttc cagcgccatc cgagcaccac gaacacgggc acggcgcagc acagcaccag
     1981 cttgtcgtag tagttcatga acgggtgata ccgatacagc gcgaaacccg cgccggcgac
     2041 catcgccagg gcgaacagcc agtcggtcac accgagacgc ttgagaaacg gacgttcgtc
     2101 gaagaggtct ggatcgacgg gcacttttcc cgcgcgctgt tgcgccagag tcgaatgcga
     2161 ggaggcttgt gtgaggtcca tgttcttacc gagttgaatc ctgcgagccg gtggacttgg
     2221 tgtccgcggg cgtttccggt gatgacgtta ccggctgtga cttgacgccc agcatggcgc
     2281 cgatcgcgtc gcgcgttcgc gcgaactcct tctcgaagtc gatcgtacgg cgcgcggtgg
     2341 acattgccat caacacgctc gtgccgcccg ttggcgtgtc tttgagccag aaccagagac
     2401 gacgttcacg cacgtaaaac atcgagaaaa tgccgaacac gagcagaagg ctgccaagat
     2461 acaccacttt tttacccggt gcgcgcgtca actggaacac ggaagcctgg atctgcttga
     2521 acgaatcgag ttgcagaaaa accggcgatc cgtacagaaa gctgtccgaa agagcattga
     2581 tcgacgattg cacgaattgc gtgtttttcg cgtccggctg agcttcaggc aggccgttct
     2641 gagctcgcga tatctgccac aggtcccaag tcgcgccttc cagcatacgc agcaataaac
     2701 ccgccgcctt ttcctgctcc cccttgggga cggatttatc gataaaaccc gctattgcct
     2761 ggaaaccgcc caacatggct cccggctggc cgggaaccgc cgccacgcca gtttcgtccg
     2821 cgccagcgaa caggttcagc acccgcgacg cgctttcttc cagatgtttc tgcaagtccg
     2881 cgtttgcttc cggcaccgag cgcttcgcga aacgacgcgc cgcttcgtcg cgcatagcgg
     2941 gtgtttccaa cgcggcgcgc aggttcatcc actgcttgat cgagctttgt tcgtcggcgg
     3001 gaatacgcaa ataccgaaac ggatcgttcg ggctaaggcg catgccggcg aggaacatcg
     3061 gctggccctg gacatcgacg ggcagcatgt agttgttgaa ttcgcgcgcc tggccgtccg
     3121 tgccccgcac cttatattgc accgatggcc cgacgttacg cagatccgtc ggcttcgacg
     3181 tcttcgcgcc agaacccagc cgttcatcga aggcctgctt gagcgtctgc gtctggccga
     3241 caccgcgggt atcgatcgaa ccgctgccgt cggtgacatt ttccacgttg atcgcgcgga
     3301 aatcggtgaa ttccacggtt tcacccttgc cgccga
//
LOCUS       DATGBK010001064         1604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_336488, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001064 DATGBK010000000
VERSION     DATGBK010001064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336488"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..128)
                     /locus_tag="VKJ77_14860"
     CDS             complement(<1..128)
                     /locus_tag="VKJ77_14860"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HMC46597.1"
                     /translation="MNVAATVYRGNLVENTHAAHVAVVDAEGRVIYAFGDPSRMTLA"
     gene            complement(125..>1604)
                     /locus_tag="VKJ77_14865"
     CDS             complement(125..>1604)
                     /locus_tag="VKJ77_14865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HMC46598.1"
                     /translation="GPALLFQSPTGHSMPVLTNLFGTPRRVALGMGIETEAQAAADPS
                     LLSDKAALESLRDVGRLLSALKEPEPPKGLKDAGKLLSLAKAVWDMAPKTVSSPPCQE
                     IVWEGQDVDLARLPIQTCWPGDAGPLITWGLTVTRGPNKTRQNLGIYRQQLIGRNKLI
                     MRWLAHRGGALDFREFALANPGKPYPVAVVLGADPATILGAVTPVPDSLSEYQFAGLL
                     RGARTELAKCLTPGVDTLQVPARAEIVLEGFIYPQDGPVPPLPAGAPPRPSNSSSAKY
                     EHALEGPYGDHTGYYNEQEWFPVFTVEKITMRRDALYHSTYTGKPPDEPAVLGVALNE
                     VFVPLLQKQFTEITDFYLPPEGCSYRMAIVQIKKSYPGHAKRVMFGVWSFLRQFMYTK
                     FIVVVDDDVNIRDWKEVIWAITTRIDPSRDTVLVDNTPIDYLDFASPKAGLGSKMGLD
                     ATNKWPGETDREWGRPITMDDAVKRRVDALWDEIGFSGGKRS"
BASE COUNT          294 a          523 c          481 g          306 t
ORIGIN      
        1 gccagcgtca tgcgtgacgg atcgccaaac gcatagatca cccggccttc ggcatcgacg
       61 accgccacgt gcgcggcgtg cgtgttttca accagattcc ctcgataaac cgtcgccgca
      121 acgttcatga gcgcttccct ccagaaaagc cgatttcgtc ccacagcgcg tcgacgcgcc
      181 gtttcaccgc gtcgtccatc gtgatcggcc ggccccattc gcggtccgtt tcaccgggcc
      241 atttgttggt ggcatcgagc cccatcttcg atcccagtcc cgccttcggc gacgcgaaat
      301 cgagatagtc gatcggggtg ttatcgacca gcaccgtatc gcgcgacgga tcgatacgcg
      361 tggtgattgc ccagatcact tccttccagt cgcggatgtt cacgtcgtcg tccaccacca
      421 cgatgaactt cgtatacatg aactgccgca ggaagctcca gacgccgaac atcacgcgct
      481 tcgcgtggcc cggatagctc ttcttgatct gcacgatcgc cattcgataa ctgcagcctt
      541 cgggcggcag atagaagtcg gtgatctcgg tgaactgctt ttgcagcagc ggcacgaaca
      601 cttcgttgag cgcgacgccg agcacggccg gttcgtcggg cggtttgcct gtataggtag
      661 agtgataaag cgcgtcgcgt cgcatggtga tcttctcgac tgtgaagacc gggaaccact
      721 cttgttcgtt gtaatagccg gtgtggtcgc cgtacgggcc ttcgagcgca tgctcgtatt
      781 tcgccgacga tgaattcgac ggccgcggcg gcgcgccggc gggcagtggg ggaacgggac
      841 cgtcctgcgg atagatgaag ccttcgagca cgatctccgc gcgcgcgggt acctgcaatg
      901 tatcgacgcc cggcgtaagg catttcgcca actcggttct tgcgccgcgc aacaacccag
      961 caaattggta ctccgacaac gaatccggca cgggtgtcac cgcgccgaga atcgttgccg
     1021 gatcggcacc aagcaccacc gccaccggat aaggcttgcc cgggttagcg agcgcgaact
     1081 cgcggaaatc cagcgcgccg ccccggtgcg cgagccagcg catgatcaat ttgttgcgcc
     1141 cgatcagctg ctgccgatag atgccaaggt tctggcgagt cttgttcggg ccgcgcgtaa
     1201 ccgtgaggcc ccaagtgatg agcggacccg cgtcgcccgg ccagcaagtc tgaatgggca
     1261 ggcgcgccag atcgacgtcc tgtccttccc acacgatctc ctggcagggc ggcgagctga
     1321 ccgttttcgg cgccatgtcc cagacggctt tcgccagtga cagcagcttg cccgcgtcct
     1381 tcaggccctt cggcggctca ggttccttga gcgccgacaa caaccggcca acgtcgcgca
     1441 acgactcaag cgcggcttta tcgctgagga gactaggatc ggccgccgcc tgcgcttccg
     1501 tttcaatacc catgccgagc gccacgcgcc ttggcgtacc gaacaggttg gtcagcacgg
     1561 gcatggagtg tcccgtcggc gactggaaca gcaaggccgg acca
//
LOCUS       DATGBK010001065         2090 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_82080, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001065 DATGBK010000000
VERSION     DATGBK010001065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82080"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            26..481
                     /locus_tag="VKJ77_14870"
     CDS             26..481
                     /locus_tag="VKJ77_14870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HMC46599.1"
                     /translation="MNSAVHAKPPIDFEQLVDVIGDAVVISDASGAITLWNPAAERMF
                     GFTPEEALGNSLDLIIPERLRGRHWSGYEKTMATGETRYGHDVLRVPAVHKDGRSLSI
                     AFTVALLHSAEPEKSVTGIVAVIRDETSRFTEERNLRKRLAELEAKSGA"
     gene            547..1998
                     /locus_tag="VKJ77_14875"
     CDS             547..1998
                     /locus_tag="VKJ77_14875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC46600.1"
                     /translation="MTAQADVKRYELLIGGEAVAPGGGAYSSIIDPSTETPIASVAQG
                     TAADVDRAVQAARAALKPWNAIRASERGRILMRFAELMRTHQDEIAAVESLDAGKPIS
                     GVRRQDVPAAIDTLAYYAGWCDKINGQVVPTRPDALTYTVREPVGVVAAIVPWNFPLM
                     IGMWKIAPALACGCTLVVKPAELTPLSAFMLGRLALEAGVPPGVLNIVTGKGSVVGDA
                     LVAHPGVDKVTFTGSPSVGRGILQGAAVNFKRVTLELGGKSANVIFADANLDQAARAA
                     ASGIFFNAGQVCSAGSRVLVQRTVYDEVVERLAQRAKSITLGDPSQKETSMGPLISAK
                     QMQTVLDYVDIGKSEGASIVSGGRRWGERGYFVEPTVFANVEHEMRISQEEIFGPVVS
                     VIPFDDEADAVRIANGTLYSLAAGVWSADIGRVHRMASALRAGTVWVNTYGYTDVRLP
                     WGGSGDSGFGREHGDVAIENFTEPKSVWVSLTQ"
BASE COUNT          419 a          591 c          696 g          384 t
ORIGIN      
        1 tgaaaagacc aaggccattt caatcatgaa tagcgccgtg catgcaaaac ccccaatcga
       61 tttcgaacaa ctggtcgacg tgatcggtga cgcggttgtc atctccgacg ccagtggcgc
      121 aatcacctta tggaaccccg ctgccgagcg catgttcggg ttcacgcctg aagaagcgct
      181 gggcaactct ctggacctca tcattcccga acgcttgcga ggacgtcact ggagcggcta
      241 cgaaaaaacc atggcgaccg gtgagacccg ttacggacac gatgttttgc gcgtgcccgc
      301 cgtgcacaag gacggccggt ctttatcgat tgcattcacg gtcgcgctgc tgcattcagc
      361 ggaaccggaa aagagcgtga ccggcatcgt agccgtcata cgcgatgaaa ccagccgctt
      421 cacggaagag cgaaacctgc gcaagcgcct ggctgaactc gaagcaaaat ccggcgcgta
      481 gtcccaacga aggggactac acccgggtcc gcgcgcggga ccgcactacg gtaaaaggag
      541 acaacaatga ccgcccaagc ggacgtgaaa cgttacgagc tgctgattgg tggcgaagca
      601 gtggcgcccg gtggaggcgc gtattccagc atcatcgatc catcgactga gacgccgata
      661 gcgagcgttg cccagggcac cgcagctgat gtcgaccgtg ccgtacaagc ggcgcgcgcc
      721 gcgttgaaac cgtggaacgc gatcagggca tcggagcgcg gccggatcct gatgcggttt
      781 gcagaattga tgcgcacgca tcaggatgaa atcgccgcgg tagaaagtct cgacgccggc
      841 aagccgatct ccggcgtccg gcgacaggat gtcccagctg ccatcgacac cctcgcgtat
      901 tacgcgggct ggtgcgacaa gatcaatggg caagtggtgc ccacgcgccc ggacgcgctg
      961 acctacaccg tgcgcgagcc ggtcggcgtg gtcgcggcta tcgtgccgtg gaatttcccg
     1021 ttgatgatcg gcatgtggaa gatcgcgccc gcgcttgcct gcggctgcac gctggtcgtc
     1081 aagcccgcgg aactgacgcc gttatcggcg tttatgctcg gccgtctcgc gctggaagca
     1141 ggcgtgccgc cgggcgtact caatattgtg accggcaagg gctcggtggt cggcgacgca
     1201 ctcgtggcgc acccaggtgt ggacaaggtc acgttcaccg gttcgccatc tgttggccga
     1261 ggaatcttgc agggcgcggc ggtcaacttc aagcgggtaa cgcttgagct gggcggcaag
     1321 tccgccaacg tcattttcgc cgatgccaat ctcgatcagg ccgcacgcgc ggctgcgtca
     1381 gggatctttt tcaacgcggg gcaggtgtgt tcggcgggct cgcgggtgct ggtccagcga
     1441 actgtgtatg acgaggttgt cgaacgtctg gcgcagcgtg cgaagtcgat cacgctgggt
     1501 gatccatcgc agaaagagac atccatggga ccgctcattt ccgcgaagca gatgcagacg
     1561 gtgctcgatt acgtggacat cggcaagagc gaaggagcgt ccatcgtgtc gggtggaagg
     1621 cgttggggtg agcgcggcta ttttgtcgag cccacggtgt ttgccaatgt cgagcacgag
     1681 atgcgcatct cgcaggaaga gatcttcggc ccggtggtca gcgtgattcc cttcgacgat
     1741 gaagccgatg ccgtgcgcat tgccaacggg acgctgtaca gcctcgcggc gggcgtgtgg
     1801 agcgcagata ttggccgggt gcacaggatg gcgtcagcgc tcagggctgg cacggtgtgg
     1861 gtgaatacgt acggatatac ggacgtccga ttgccttggg gcggctcagg tgattcgggc
     1921 tttggccgcg agcacgggga cgtggctatc gagaacttta cggagcctaa gagcgtgtgg
     1981 gtgtcgctga cgcaatgagg tggacccaat gaaaagaggg gcgggttgat taacccgccc
     2041 ctctttgaaa gctgagtgcc tgaggcatga ccttgggcac tcagcagcat
//
LOCUS       DATGBK010001066         1802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_198224, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001066 DATGBK010000000
VERSION     DATGBK010001066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1802
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198224"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..819
                     /locus_tag="VKJ77_14880"
     CDS             <1..819
                     /locus_tag="VKJ77_14880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008447284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HMC46601.1"
                     /translation="DAVCIESSITRKAAGADDPLTASLVALARRSAGDLPSSGRTPAV
                     LRDEAASVLSTLAQAILGGSASSRAGRTLSERLAVSWGCSEAEDAIRRALVLLADHEL
                     NASTFATRVTVSTGASLSAGVLAGLATLTGPLHGGASSSVRALIELATDIGPEAAVRN
                     WLAQGRAFPAFGHPLYADGDPRASALLSTLSAPPLYAELAACVERAVGERPNVDFALA
                     ILATVFDLPEHAPLSLFALSRCAGWLAHALEQVQTGRLIRPRARYVGLQPKPTE"
     gene            complement(1063..1371)
                     /locus_tag="VKJ77_14885"
     CDS             complement(1063..1371)
                     /locus_tag="VKJ77_14885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HMC46602.1"
                     /translation="MAASALVQTRIDPALKERAAAVLDNMGLTVSDAVRILLTRIANE
                     GALPFAFATDPAVHDAWFRAKVQEALDDPRPAIPHEEVEAHFAKRRAAALRKAGEGDA
                     "
     gene            complement(1548..>1802)
                     /locus_tag="VKJ77_14890"
     CDS             complement(1548..>1802)
                     /locus_tag="VKJ77_14890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46603.1"
                     /translation="NPGNLMPASLADHQLDHIERMVRSVARAYPAGPVHGMDRGYWES
                     RLRALMNESDLVAVQQHRVQRLLQDLAKRVRPNALTQTAA"
BASE COUNT          306 a          541 c          570 g          385 t
ORIGIN      
        1 gatgcggttt gcatcgagtc atcaatcacg cgtaaggccg ctggcgccga cgatcccttg
       61 accgcgagtc tcgtcgcttt ggccaggcgt agcgcgggtg atttgccatc gagtggacgc
      121 acgcctgccg tgctgcgaga cgaggccgcc agcgtgcttt cgacgctcgc gcaagccatc
      181 cttggcggtt cagcttcttc gcgggcggga cgcacgttaa gcgagcgcct ggccgtatcg
      241 tggggatgca gcgaggcgga ggatgcgatc cggcgcgccc tcgttttact cgccgatcat
      301 gaactgaatg catcgacctt tgcgacgcgc gtcaccgtct cgaccggcgc gtcgttatcg
      361 gctggcgtgt tggctggcct cgctacgctc actggaccgt tgcatggagg tgcatcgtcg
      421 tcggttcgcg cgctgattga gctggcaacc gatatcggcc cggaagcggc cgtgcgtaac
      481 tggctggcgc aaggccgcgc gtttccggca ttcggtcatc cgctatacgc cgatggggac
      541 cccagggcga gcgctctgct cagcacattg agcgcgccgc cgctttacgc agaacttgcc
      601 gcgtgtgtgg agagggcggt gggtgagcgg ccgaacgttg attttgcgct ggcgattctt
      661 gccactgttt tcgacctgcc ggagcatgcg ccgctgtcgc tgttcgcact ttcacgctgt
      721 gctggttggc tcgctcacgc gttggagcag gtgcaaacgg gacgcctgat ccggcctcgg
      781 gcgcgttatg tcgggctaca accgaagcca acggagtgag ttcgcgcgag ccgcatgttg
      841 agacaaaatg aagtcgtata gtggcaaata cggtgtttgg cttatgacca gttcgcgagt
      901 gccctcgatg cgcccgggac ggccagtctc gggaaactgc agtagctgcc tgacttgcgc
      961 acggatccga tcatccatga cgacggctgc gcgggcggtc ctcttcgatg tagtcaaaaa
     1021 ttgtgtcgcg atcctctagt gcgaaagcgg accattcaag cctcacgcgt caccttcacc
     1081 ggctttccga agcgcggccg cgcgacgctt ggcgaaatga gcttcgactt cctcgtgcgg
     1141 gatagccggg cgcggatcat ccaatgcttc ctgcactttc gcgcggaacc atgcgtcatg
     1201 taccgccggg tcggtcgcaa aggcgaacgg caacgcaccc tcattggcaa tacgagtcag
     1261 caggatacgt acggcatccg agacggtcag tcccatgttg tcgagcaccg cagccgcacg
     1321 ctctttcagc gcagggtcga tgcgcgtttg caccaatgca ctcgcagcca tggcgattac
     1381 tcctctgtgg tagttctaga aataccattg taattcaatt gcattacatg tgatatgact
     1441 agctacctat gcgcacgtct ggagattgtc gcaaagtgct agttttcgcg acaaggcgag
     1501 gcgaatggtg ttttggtccg gccagtgtcc gcccgtcccc tcccgcttca cgccgccgtt
     1561 tgtgtcaacg cattcgggcg tacgcgcttg gccagatcct gtaaaagccg ttgcacgcgg
     1621 tgttgctgca cggccacgag gtcgctctcg ttcatcaggg cgcgaagccg gctttcccag
     1681 tatccccggt ccatcccgtg gacaggtccg gccggatagg cgcgcgcgac ggacctgacc
     1741 atgcgctcga tgtggtcgag ctggtgatcg gctaaactcg cgggcatcaa gttgccggga
     1801 tt
//
LOCUS       DATGBK010001067         3336 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_244115, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001067 DATGBK010000000
VERSION     DATGBK010001067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244115"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..686)
                     /locus_tag="VKJ77_14895"
     CDS             complement(<1..686)
                     /locus_tag="VKJ77_14895"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HMC46604.1"
                     /translation="MNQRDAATNGSATPSPARQCLDALSLRGWLAHLSATGRVATIAK
                     PVALKHELAAVAKRLDGKQAAVFLAPGGHDMPVVSGFMSRRAWIAEAMGVAEKDLLQR
                     FRDAADHPLPWKEVPAGEAACQQVVHTSGIDLHALLPIPTHSEHDNGPYITAGLVIAR
                     NPRTGVQNVSINRIQVHARDRMAILLLPRHLYAFQKTAEAAGDALDIAVAIGVDPLTM
                     LASQAISPID"
     gene            937..1851
                     /locus_tag="VKJ77_14900"
     CDS             937..1851
                     /locus_tag="VKJ77_14900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46605.1"
                     /translation="MDLKQIQYFIALFEDGSVTRAAKRLNIVQPALSMQIAKLEDELH
                     QQLFERGAHGMAPTAPGRLMYRLFLPIMRDLTHARQQLVQRDEVVTGHVSIGLIASVT
                     ESVLADSLSRFHARYPHVEVTVSDGYSATFIDWVSGGQLDAALINKPRARLSLDSQPL
                     LDEEMVLVTSAVHGPDLPHAIDLAQLPELELVLPTKRHGLRGVLDTAAQHEDVLLAPR
                     FEIDVLSTIVKLVESTRFATILPRIVVERAVRLGTLRAYPILAPRIVRHIVRISHPRR
                     PLSAAAEALIAIIADELRLVSSESTMEA"
     gene            complement(1867..2259)
                     /locus_tag="VKJ77_14905"
     CDS             complement(1867..2259)
                     /locus_tag="VKJ77_14905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006164282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC46606.1"
                     /translation="MQTLLKDSPAFSGFAVKDLAEAKAFYSDTLGLKVTSEPMGILKL
                     HLAGGNNVLVYPKPDHVPATYTVLNFPVDSVDQAVDTLSARGVNFEQYDMPSLKTDAK
                     GICRGSEGPVIAWFKDPAGNILSVLEER"
     gene            complement(2286..2486)
                     /locus_tag="VKJ77_14910"
     CDS             complement(2286..2486)
                     /locus_tag="VKJ77_14910"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HMC46607.1"
                     /translation="MRVRGEDVSITDGPFAETKEQVGGFLLIEARDMNEAMRVASGFP
                     GARLGGVEVRPVKELRASWSDA"
     gene            complement(2517..2654)
                     /locus_tag="VKJ77_14915"
     CDS             complement(2517..2654)
                     /locus_tag="VKJ77_14915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46608.1"
                     /translation="MKFLCLIFFDERVLDDLSKRQYDALVDESLAYDERLRESRHLIA
                     A"
     gene            2876..3280
                     /locus_tag="VKJ77_14920"
     CDS             2876..3280
                     /locus_tag="VKJ77_14920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6232 family protein"
                     /protein_id="HMC46609.1"
                     /translation="MQQDLPFNERGITFARAGLSASGQLFPLRDLLGATVVMVPRQKP
                     LPIALGVIGLIVAVTGGILGSGPALLLGVMISVVGYLSWITQDVIYRMYVTTPAGERE
                     VFTTKDEEFAQRVAKLVRDGIPAAPTSATASV"
BASE COUNT          632 a          964 c         1019 g          721 t
ORIGIN      
        1 aaatcgatcg gagaaatggc ctgggacgcg agcatggtca gcggatcgac gccgattgcc
       61 acggcaatat cgagcgcgtc gcccgcagct tcggcagtct tctggaatgc ataaagatgg
      121 cgcggcagca gcaggatcgc catgcgatcg cgcgcatgaa cctggatacg gttgatcgaa
      181 acgttctgta cgccggtgcg gggattgcgc gcaatcacga gacctgcggt gatgtaagga
      241 ccgttgtcgt gttcgctatg ggtagggatc ggcagcaacg cgtgaaggtc gatgccgctg
      301 gtatgcacga cttgctggca agcggcttcc ccggcgggca cttctttcca tggcagcgga
      361 tgatccgctg catcgcggaa acgttgcaac aggtctttct ccgccacgcc catggcctcg
      421 gcaatccacg cacgcctgga cataaagccg ctgactaccg gcatgtcgtg tccgccgggg
      481 gcgaggaata cggccgcttg cttgccgtcg agccgcttcg ccacggccgc gagctcgtgt
      541 ttaagcgcga ccggtttggc gatggtcgcg acgcgtcccg tggcggagag gtgcgcgagc
      601 cagccacgca gcgacaacgc gtccaagcat tggcgggccg gtgagggtgt tgcggagccg
      661 ttcgtcgcgg cgtcacgttg gttcatctgc gtctccatca tttctgaaat gaagcgtagc
      721 gacaacgcga tataacttct aatactgttt tttgatgttc tcgatcagta ctcgtgatat
      781 ccgtgtttgc cctgatgtaa gtatttcgtt agtggaatat caataatatg gggctcgggc
      841 gcggtaccct ccggccggat gtctgataaa taactgctgc ttcattagac ttattgatag
      901 ccttctcgac gagccactgt tttatgagcc gaccttatgg acctgaagca gattcagtat
      961 ttcatcgccc tgttcgagga cggctccgtc acgcgggcag ccaagcgact gaacatcgtg
     1021 cagcctgcct tgagcatgca gatcgccaag ctggaggacg aactgcatca gcaactcttc
     1081 gaacgcggcg cgcacggcat ggccccgacc gcaccgggac ggctgatgta ccgcctcttc
     1141 ctgccgatca tgcgggacct cacccacgcg cgccagcaac tggtgcagcg tgacgaagtg
     1201 gtaacggggc atgtatcgat cggcttgatt gcatcggtga cggagagcgt gctggcggat
     1261 tcactatcgc ggtttcacgc tcgttatccg catgtggaag tcaccgtgtc tgacggttac
     1321 agcgcgacgt ttatcgactg ggtgtccggg ggacaactcg acgccgcgct catcaacaaa
     1381 cctcgtgcgc gcctgtcgct cgactctcag cccttactcg atgaagagat ggtgctggtc
     1441 actagtgccg tgcatggtcc tgacttgccg catgccatcg accttgcgca gcttccggaa
     1501 ctcgaactgg tgttgcccac gaagcgccat ggtttgcgcg gcgtactcga taccgccgcc
     1561 cagcacgaag acgtcctgct cgcaccacgc ttcgagattg acgtgctgag cacgatcgtc
     1621 aagctggtgg aaagcacgcg ctttgcgacg atccttccgc gcattgtggt ggagcgcgcg
     1681 gtgcggctcg gtacgctgcg tgcctatccc attcttgcgc cgcggatagt gcgtcatatt
     1741 gtgcggatca gccatccgcg gcgcccgttg agcgcggcgg cggaagcgct gatagcaatc
     1801 attgccgacg aactgcggct cgtctccagc gagtcgacga tggaagcatg aacgtaacca
     1861 gtacttttat cgctcttcaa gcaccgagag aatattgccc gccgggtcct tgaaccaggc
     1921 aatcaccggg ccttcggagc cgcggcagat ccctttggca tcggtcttga gactcggcat
     1981 gtcgtactgt tcgaaattca cgccacgcgc gctcagcgtg tcgactgcct ggtccacgct
     2041 gtcgaccgga aagttcagta ccgtgtacgt cgccggcaca tgatcaggct tgggatagac
     2101 gagtacgttg ttgccgcccg cgagatgcag cttgagaatg cccatgggct cactcgtcac
     2161 cttgaggccc agggtgtcgc tgtaaaacgc cttcgcttca gcgagatcct tcaccgcgaa
     2221 gccgctgaac gcagggctgt ctttcaataa cgtttgcatt gtttgctcct ttcagtttgt
     2281 gcaagtcatg cgtccgacca cgacgcgcgc aactccttga ccggacgcac ctccacgccg
     2341 cctaagcgcg cgccggggaa accggaagcc acgcgcatgg cttcattcat gtcgcgtgcc
     2401 tcgatcagga gaaagccacc cacctgctcc ttcgtctcgg cgaacgggcc atccgttatg
     2461 gagacgtcct cgccgcgaac cctcagtgtg acggcttccc tcgcgtactg aagcgcctac
     2521 gccgcaatga gatggcggct ctctcgcagg cgttcgtcgt atgcgaggga ttcatcgact
     2581 agtgcgtcgt actgccgttt cgacagatcg tcgagcacgc gttcgtcaaa gaaaatgagg
     2641 cacaggaatt tcatcgatat ctccggttaa gggtggtttc accctgtcga cgcgggagca
     2701 aggtcgaaat cgacagaaaa cgggtgcgaa aaagtatcga aatgtaacga acccgactgg
     2761 agtgcccggc tggctttgcg ccacggcgaa atttcatgcg acgatcggcg ggatgcccgg
     2821 ggccgggcgg gtctgttaat ctgcgccttt ctttccgccg acaagacttc gaaccatgca
     2881 acaggatctc cctttcaacg aacgaggtat tacgtttgcc cgcgccggcc tgagtgcgtc
     2941 gggccagttg tttccgttgc gcgatttgct cggggcaacg gtcgtgatgg tgccgcggca
     3001 gaagcccttg cctattgcgc tgggcgtgat cggtttgatc gtggcggtga cgggtggaat
     3061 tctcggatca ggaccggcgt tgctgctggg cgtgatgatt tcggtggtgg gatatttgtc
     3121 gtggattacg caggatgtga tctacaggat gtacgtcacg acgccggcag gcgaacgtga
     3181 ggtattcacg acgaaggacg aggagtttgc gcaacgcgtg gcgaagttgg tgcgcgacgg
     3241 cattccggct gcgccgacgt ctgcgaccgc gtcggtttaa cactttcttt acacggaccg
     3301 caacgatcga tgcccgttgt taatgcgccg ctcgct
//
LOCUS       DATGBK010001068         1615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_198281, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001068 DATGBK010000000
VERSION     DATGBK010001068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198281"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..425)
                     /locus_tag="VKJ77_14925"
     CDS             complement(<1..425)
                     /locus_tag="VKJ77_14925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013586868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HMC46610.1"
                     /translation="MQSKYLDYDAIGLAELVRSGQVSARELIDTAITRAEAVNPALNA
                     IVLKDYQAARNRASRGGRDGSGTLGEGPLAGVPYLIKDLGAPVAGLRMSMGCRHFQHF
                     TPTEDSPIVSRSKQAGLNIFGKTNTPEIGQMPYTEPELFG"
     gene            complement(505..1200)
                     /locus_tag="VKJ77_14930"
     CDS             complement(505..1200)
                     /locus_tag="VKJ77_14930"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HMC46611.1"
                     /translation="MTVTSRWIDIPANGDTFQGYLALPKGGTGPGVVIIQEIFGVNSH
                     IRAVADQYAADGYVALAPDIFWRVQPRVELGYDGADREKAMEIYGKLDVAHAVADVTA
                     TAAALRALPEVTGKVAAVGYCLGGRLAYLSAAQGAFDIAVAYYGGGIQNELDQADKIK
                     VPMQFHYGALDAHIPSDAVDSVKQRFADKDAQVHVYPGADHGFNCTDRASYNQAASAL
                     AHGRTLTFLGEHS"
BASE COUNT          310 a          476 c          515 g          314 t
ORIGIN      
        1 ccgaacaact cgggttcggt gtacggcatc tggccgattt caggtgtgtt ggtcttgccg
       61 aaaatgttga gcccggcctg cttcgagcgc gagacgatcg gcgaatcttc agtcggcgtg
      121 aaatgctgga aatggcgaca gcccatcgac atccgcaaac ccgcgaccgg cgcacccagg
      181 tccttgatga ggtagggaac acccgcgagc ggaccttcgc ccagggtgcc ggagccgtcc
      241 cgtcccccac ggctcgcgcg gttgcgagcc gcctgatagt ccttcaggac aatggcgttg
      301 agcgccggat tgacggcttc ggcacgcgtg attgccgtat cgatcagttc ccgcgcgctg
      361 acctggccgc tgcgcacgag ctcggccagg ccgattgcgt cgtagtcgag atacttggac
      421 tgcaaggtgc cccctacttt gatgcagttg tgtcccgtct tctcaggcgg gcaaccgtgc
      481 agtccgcgaa agcgctgcgc cgagtcagga atgctcgccg aggaacgtca gtgtgcggcc
      541 gtgcgccagt gccgatgccg cttgattgta cgatgcgcgg tccgtgcaat tgaagccgtg
      601 atcggcgccc gggtacacgt ggacctgagc gtccttgtcc gcgaagcgct gcttgaccga
      661 gtcgacggcg tcagacggaa tgtgcgcgtc gagtgcgccg taatggaatt gcatcggcac
      721 cttgatcttg tcggcctggt cgagctcgtt ctggatgccg ccgccgtagt aggccacggc
      781 gatatcgaac gcaccttgcg cggcggacaa atacgccagc cggccgccga gacaataacc
      841 gacagccgcg accttgcccg tgacttctgg tagtgcccgc agcgcggcgg cggtggcggt
      901 gacgtcggcg actgcatgcg ctacgtcgag cttgccgtag atttccattg ccttctcgcg
      961 gtctgcgccg tcatagccca gttccacgcg cggctggacg cgccagaaaa tgtccggtgc
     1021 gagcgcgacg taaccatcgg ccgcgtactg gtcggccacg gcgcggatat gcgagttcac
     1081 gccgaatatt tcctgaatga tgacgacgcc cgggcctgtg ccacctttgg gcaacgcgag
     1141 ataaccctgg aaggtgtcgc cgtttgcagg aatgtcgatc cagcgggatg tcacggtcat
     1201 gatgaagctc ctggctgatg cctgaataag tggctaagtg gcgcgaaatg ataggggacg
     1261 atacgggggg tgaaccgcag ccgaagagtg tgccaccatt cgatgcgcct tgctggcaag
     1321 ggcgcgcgct gtaaagcagc tgtaggcaat gcacgcggcg gatggttttc agcgatgttt
     1381 ctgccacttt ccgccgttgt cgtggagcac ggcgtgaggc tttgaagcgg tgactagtta
     1441 attgtgctac ccgagtgcta accccaatgc ttacccgagt tcttaaccca cgaaattgac
     1501 ttgaaacaaa cggaccgaac aataacggca cggccgggta aaactaaagt gccgcctcta
     1561 gaacgccgcg aacgaacact tgcgcaaacg tgtcaatctg ctgaagaacc gcatg
//
LOCUS       DATGBK010001069         2315 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_267607, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001069 DATGBK010000000
VERSION     DATGBK010001069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267607"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1120
                     /locus_tag="VKJ77_14935"
     CDS             <1..1120
                     /locus_tag="VKJ77_14935"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HMC46612.1"
                     /translation="LADRTWFTFHRDNPKLGLFVSRPLQSRLNPGEVDLMFSRRVNHP
                     DGSFAGVVVAAFRLDYFQNLLSGVRLGPGGVITLLQDDGHVILRYPNDGTPVDENFSG
                     RKNFERFRQKHETSFIDTSGIDGEERLYNFRRFNKLKMIVIIAPATRYVFADWTSRAW
                     YIGVVTALLIVGMLFAAQLLSVEFRHRLVVEQQLRDMTRIDGLTGLSNRRSLDDRLML
                     EWHRSKRSGKPLALLFVDIDRFKSYNDTYGHQAGDDALTAVAQAIARNSQRPGDIAAR
                     FGGEEFVVVLPETDGTAAAVVAAAIHAAVRGLAIEHNGSEHGVITVSIGVACTDSEEV
                     SDALALIKAADQAVYRAKASGRNQTSMAEPFGGAAVTT"
     gene            complement(1346..1819)
                     /locus_tag="VKJ77_14940"
     CDS             complement(1346..1819)
                     /locus_tag="VKJ77_14940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46613.1"
                     /translation="MNTKQSKKGHLEAAASHHEQAARFHREASHHFGAGKDYDHAAHQ
                     AVMAHGYALHAIDEANNVVKHNAGASTVLPPPTGSAEHSTTAAHHHAAAAELHGQAAQ
                     HLRHAAKLFDDDRSAVAHDTQVAFSLAVRALSHGNEAARQHVTSTRDKTPATGTA"
     gene            complement(2016..>2315)
                     /locus_tag="VKJ77_14945"
     CDS             complement(2016..>2315)
                     /locus_tag="VKJ77_14945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011547748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC46614.1"
                     /translation="PQLEGIEYEYRWAGRIAITRDFLPHVHTPAEGLTIALGYNGRGI
                     AMATTHGKHLAAFMSGAAQGLPLPPTSIKPIPFHALQRVHISAGVAWYGLLDALS"
BASE COUNT          417 a          650 c          740 g          508 t
ORIGIN      
        1 tctggccgat cgcacatggt tcacctttca tcgcgacaat ccgaagctgg ggctgttcgt
       61 cagccgtcca ctgcagtcgc gtctcaatcc cggcgaagtt gacctcatgt tcagccggcg
      121 ggtgaaccat cctgatggct cgttcgccgg cgtggtggtg gcggccttcc ggcttgacta
      181 cttccagaac ttgctgtcag gggtccggct tggtcctggc ggtgtcatta cgctcttgca
      241 ggatgacggc catgtgatcc tacgttatcc gaatgatgga acgccggtcg acgagaactt
      301 cagcggaaga aaaaacttcg agcggttcag acagaagcat gagacgtcgt tcatcgacac
      361 gtctggaata gacggagagg agcggctgta caattttcgc aggttcaaca agctgaaaat
      421 gatcgtgatc atcgcgcccg cgacccgtta cgtgtttgcg gactggacga gccgggcgtg
      481 gtacatcggc gttgtcactg cgctgctgat cgtcggcatg ctgtttgccg cacagcttct
      541 ctcagtggaa ttccggcaca ggctggtcgt ggagcaacag ttgcgcgaca tgacgcgtat
      601 cgacgggctg acgggtctga gtaaccggcg cagtctggac gatcgtctca tgctcgaatg
      661 gcaccgctcg aaacgctcgg gaaaaccatt ggcgcttttg ttcgtggata tcgaccggtt
      721 taagagctac aacgacacgt acggtcacca ggccggtgac gacgcgttga ccgccgtggc
      781 gcaggcgatc gcgcgtaaca gccagaggcc gggcgatatc gctgcgcgct tcggggggga
      841 ggagtttgtc gtcgtgctgc cggagacgga cggtacggcg gcggctgtgg ttgcagccgc
      901 tatccacgcg gcggtgcgcg gactggctat cgaacacaac ggcagcgaac acggggttat
      961 cacggtgagc attggcgtgg cgtgtacgga ctccgaagag gtgagcgacg cgctcgcgct
     1021 gatcaaagcg gcagaccagg ccgtgtatcg ggcgaaggcc tcaggcagaa accaaaccag
     1081 catggccgag ccattcggcg gagcggccgt tacgacctag gccggattta aatgcccgcg
     1141 gcttcatgca aggcgcgcat caggtgtgac ccattcatgc acgcccttgg gctcgacttt
     1201 gggctcgagg ttgggctgat agtgacgagc acgcgccctg gcgttcgttt ggctggttcc
     1261 gatcgaagag gccaaggcgg tgatggtgtt cctaatgttg ccgtccctta gttgctcaag
     1321 gcaacatcct ttcaaacgtg cgctctcacg ccgtgccggt ggccggggtt ttatcacgcg
     1381 ttgacgtgac atgctgtctg gccgcttcgt tgccatggga tagtgcgcgc acggcaaggg
     1441 aaaacgctac ctgggtgtcg tgagcaacag cgctacggtc atcgtcgaag agtttggctg
     1501 cgtggcgcaa atgctgcgcc gcttgcccat ggagttccgc tgctgccgcg tgatggtgcg
     1561 ctgcggtcgt gctgtgttca gcggaacctg ttggcggcgg caatactgtc gacgcacccg
     1621 cgttgtgttt gacgacgttg ttcgcttcgt cgatggcgtg aagcgcataa ccatgtgcca
     1681 tgaccgcctg atgggcggcg tggtcgtagt ccttgccagc tccgaaatgg tgtgacgcct
     1741 cgcgatgaaa tcgcgcggcc tgctcgtgat gcgatgctgc ggcttcgaga tgtccctttt
     1801 tactttgttt tgtgttcatg gctactcctc ctgtacaact tgtccgactt cgacgtttga
     1861 cccgtcgcat gagccacgca acaggccgga atctatccaa tgaatttacg cttcttcggt
     1921 tccgggaggt tttttttcgg caggcgggtg cgctctggtg ctacttactt tgcaactccg
     1981 ccgcagcaaa gcacgccagc gtcattaaac agttgtcagg aaagcgcgtc cagcaagccg
     2041 taccacgcta cccccgcgct gatatggaca cgctgcagcg catgaaaggg gatcggcttg
     2101 atcgatgtag gcggcagggg caacccctgt gccgcaccgc tcatgaacgc ggccaggtgt
     2161 ttgccgtgcg ttgtcgccat cgcgatgccg cgcccgttgt atcccagcgc aatcgtcaag
     2221 ccctcggcag gcgtgtgcac atgcggcagg aagtcgcgtg taatggcgat gcgtcccgcc
     2281 catcggtatt catattcgat gccttcgagt tgcgg
//
LOCUS       DATGBK010001070         2225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_198340, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001070 DATGBK010000000
VERSION     DATGBK010001070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198340"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1476)
                     /locus_tag="VKJ77_14950"
     CDS             complement(<1..1476)
                     /locus_tag="VKJ77_14950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC46615.1"
                     /translation="MNLSFVKLFSKQRAATAQTSAARGKPVYPSKLAAAVAFAVAAFA
                     LAPAYAQSPAQGPSPDDDQSAISAADLITAPPTGKEVQDLPNVAASSQIVFQVLAAEV
                     ALQRNQAAPAYQTYLALARDTHDPRFAQRATEIAIAAQSPNDALTAVQLWQQFSPNSE
                     RAAQLSASLLILSGKPDDAKPILTTELAKVPAEQRGDAILSLQILLSRGPNRVGGLNV
                     LKDLVKNDMDRPETQLALARQEIAADDQPGAKASLEQALKLKPDYLPAALTLARMGPN
                     ERNEGIASFEKYLEKDPKSHDARLALAQLYLSADRLDDAQKQFEIMRKNNSKDLTPLM
                     ALALINIQKKQPDKAQDYLKQYAAAAESTPGADPGQAYIYLAQLSLEKKDDVAANQWL
                     DKIPRESQQYLPAQVTRAQILASHGKVDEARQLLGSLQTSDPRDLALLARTDAAMLFQ
                     AQRYPEAEAALSKASAAFPDDPDISYDYAMAAEKNGHYDTME"
     gene            1562..>2225
                     /gene="mutM"
                     /locus_tag="VKJ77_14955"
     CDS             1562..>2225
                     /gene="mutM"
                     /locus_tag="VKJ77_14955"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HMC46616.1"
                     /translation="MPELPEVEVTRRGIEPFVAGRRVERVDVRTPALRWPIPPHLAKT
                     MKALKIEKVERRGKYLLFETSEGWLIVHLGMTGTLRVLRNVPRPPDPAKHDHIDLIFD
                     DFILRFRDPRRFGAVLWHARADGDVLDHPLLAGLGVEPFTAEFSGALMFRQTRGRKVS
                     VKQALLAGTMVVGVGNIYASESLFRAGIRPTVAAGRVSLVRYDLLADAVRTTLAAAIE
                     KGG"
BASE COUNT          373 a          676 c          715 g          461 t
ORIGIN      
        1 ttccatggtg tcgtagtggc cgttcttctc ggccgccatc gcgtagtcgt aggaaatgtc
       61 cgggtcatcg gggaaggccg ccgacgcctt cgacaaagcc gcttccgcct ccggataccg
      121 ctgcgcctgg aacagcatgg cggcgtccgt gcgcgcgagc agcgccaggt cgcggggatc
      181 cgacgtctgc aggctgccca gcaactggcg cgcttcgtct accttgccgt gcgaggcgag
      241 gatctgcgcg cgcgtgactt gcgccggcag atactgctgg ctctcacgcg gaatcttgtc
      301 gagccactgg ttcgcggcca cgtcgtcttt cttctccagc gacaactgcg cgagatagat
      361 ataagcctgt cccggatcgg cgcccggcgt gctttcagcc gccgccgcgt actgcttcag
      421 gtaatcctgc gccttgtccg gctgtttctt ctgaatgttg atcagcgcga gcgccatcag
      481 cggcgtcaga tctttcgaat tgttcttgcg catgatttcg aactgtttct gggcgtcgtc
      541 gagacgatct gccgacagat acagttgcgc cagcgcaagc cgcgcgtcgt gcgatttcgg
      601 atccttctcg aggtatttct cgaacgaagc aataccttcg ttgcgttcgt tcggccccat
      661 gcgagcaagc gttaacgcgg caggcaagta gtcgggcttc aatttcagcg cttgttcaag
      721 cgatgccttc gcgcccggct ggtcgtcggc ggcaatttcc tgacgcgcga gcgccagttg
      781 cgtctcgggt cggtccatgt cgttcttgac cagatccttc agcacgttca acccgcctac
      841 gcgattcggt ccacgagaga gcaggatctg cagcgaaagg atcgcgtcgc cacgctgctc
      901 agcgggtact ttcgcgagct cggtggtaag gatcggcttg gcgtcgtcgg gcttgccgga
      961 gaggatcagc agcgacgcgc tcaactgcgc cgcgcgttcc gaattcggtg aaaactgctg
     1021 ccaaagctga acggctgtca gtgcgtcgtt gggactttgt gcggcaattg caatctcggt
     1081 cgcgcgctgc gcgaagcgtg gatcgtgcgt gtcgcgcgcg agggcgagat aagtctgata
     1141 ggcgggcgct gcctgattgc gttgcaacgc aacttccgcc gcgagcacct ggaatacgat
     1201 ctggctggac gcggcgacat tcggcaggtc ctgtacttcc ttgcccgtgg gcggcgcggt
     1261 gatcagatcc gctgcactga tggcggactg gtcgtcgtcc ggagaaggac cttgcgcagg
     1321 gctctgcgca taggcaggcg caagcgcaaa cgccgccacc gcgaacgcta ctgcggccgc
     1381 gagcttgctc gggtagaccg gcttaccgcg tgcggcgctc gtttgagcgg tcgctgcacg
     1441 ctgcttcgaa aacaacttta cgaaggacaa gttcatggaa atccgatcaa tgtttcagtc
     1501 gattgtaacg cgctcgctac aatacgcgca catcccacag caagttacag accagtaaaa
     1561 catgccagag ttgccggaag tcgaagtaac ccgccgcggg atcgaaccgt tcgtcgccgg
     1621 acgccgggtt gagcgtgtcg atgtccgtac accggcgctg cgctggccga ttccgcctca
     1681 tctcgcgaag acgatgaagg cgctgaaaat cgagaaggtc gagcggcgcg gcaagtacct
     1741 gttgttcgaa acctccgaag gctggctgat cgtgcatctc ggcatgacgg ggacgctgcg
     1801 ggtattgcgg aacgtgccgc gtccgccgga tcccgcgaag catgatcata tagacctgat
     1861 cttcgatgac tttattctgc gctttcgcga cccgcggcgt tttggcgcgg tgctctggca
     1921 cgcgcgcgca gacggtgacg tgctcgacca tccactgctg gcaggcctgg gcgtggagcc
     1981 gttcaccgcc gagttttccg gcgcgctgat gttccggcag acgcgcgggc gcaaggtgtc
     2041 ggtcaagcag gccttgctcg cgggcacgat ggtcgtcggc gtgggcaata tttatgcgtc
     2101 cgagagcctg tttcgcgcgg gtatccgccc gaccgttgcc gccgggcgcg tttcgctcgt
     2161 gcgctacgat cttctcgccg acgccgtgcg cacgacgctt gccgcagcga tcgaaaaggg
     2221 cggca
//
LOCUS       DATGBK010001071         3100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_12698, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001071 DATGBK010000000
VERSION     DATGBK010001071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12698"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(215..1285)
                     /locus_tag="VKJ77_14960"
     CDS             complement(215..1285)
                     /locus_tag="VKJ77_14960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine cyclodeaminase"
                     /protein_id="HMC46617.1"
                     /translation="MTRYIDVNDIRQLLRTIGPETFIHTLADYIRADYLRWPQFDKSP
                     RTAAHSPEGVIELMPVADHTLYGFKYVNGHPNNTRANMLTVMAFGVLADVATGVPLLL
                     SEFTIMTALRTAATSALAASVLARPGSKSMALIGNGAQSEFQALAFKNMLGVEHIRVF
                     DTDPAATEKLIRNLSGIKGLTLTRAASIREAVQGADIVTTVTADKTNATILTPDMIEA
                     GMHINAVGGDCPGKTELHADVLNGARVMVEFEPQTRIEGDIQQLPADSPVIEFWRVLA
                     GEVQGRESDAQVTVFDSVGFALEDFSALRYLNDLVRTEGIGTRIDLIAQPSNCKDLYS
                     LVASPSTAAESGERVQGLFQAA"
     gene            complement(1366..2484)
                     /locus_tag="VKJ77_14965"
     CDS             complement(1366..2484)
                     /locus_tag="VKJ77_14965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020202294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase/aspartoacylase
                     family protein"
                     /protein_id="HMC46618.1"
                     /translation="MNSTSHALPHATAGAAYYLTSRQFGPSGGSKKVYIQAGLHADET
                     PGVMVALTLLEQLRRLEDDGKLRAEVVLVCNANPLGLSQWLFGAPVGRFDFASGRNYN
                     RDFPMLAGKIAAALEGKLTQDADENLVIIRQAWKAALSAQQPATLFDGLQRQLMLLAH
                     DADVVLDLHCSREAAMHVYTGQAIWAEAEPLARYLGAVASLLAYDSGASSFDEAQSLT
                     WWQLKQQFGAHYPIPTGTVSVTVEHRGQRDVSYEMARKDAQAIIDYLTHQGFIDGIAP
                     PLPELAGPATPLAGSEQFLAPAGGILVHRAQLGDVIEVGQPLFDVIDATSGGTTTVHS
                     KTSGVFYMRRDVRFVKHGDPLGRVTGATPQRTGKLLGA"
     gene            complement(2627..>3100)
                     /locus_tag="VKJ77_14970"
     CDS             complement(2627..>3100)
                     /locus_tag="VKJ77_14970"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46619.1"
                     /translation="APHVSDVDLSIERMYRSDAGVIARKGHPQAHVTSVRELVECDWV
                     SIRPAGIAGGAENRLISLFKAEALGAPRIVFTAESLLETLHIVSETDCLTIEPAVLSE
                     FKLFSPSLVTIPIREAFDPRDVCLISRRASPLTTVAHELVSMLLSYSRLLRGTSA"
BASE COUNT          576 a          917 c         1016 g          591 t
ORIGIN      
        1 cccttgctgc ggcacggaag ctgccttgct ccacgaccgc gcaaaacacc cggagctgga
       61 tcaacgtcat gaagaaaccc tctggaataa gtgcaacgct cgcccggtcc tatgccatgc
      121 catgccggcc ggcgggagcg atgcgttcgg cttgtgccaa gcatagcctt ccagaaagcc
      181 aacgtgtacc gctgaatccc gatgccctga tgcctcaggc agcctgaaag agaccttgta
      241 cgcgttcgcc gctttcagca gccgtgctgg gcgacgccac gagcgagtag aggtccttgc
      301 agttcgacgg ctgggcgatc aggtcgatcc gtgtgccaat cccctcggtg cgcacgagat
      361 cgttcaggta gcgcagcgcc gagaagtctt ccagcgcgaa cccgactgaa tcgaatacgg
      421 tcacctgtgc gtctgattcg cggccttgca cttccccggc cagcacgcgc cagaactcga
      481 tcacgggcga gtcggcggga agctgctgga tgtcgccttc tatgcgcgtc tgcggttcga
      541 actccaccat cacgcgggcg ccgttaagca cgtcggcatg caactcggtc ttgccggggc
      601 aatcgccgcc cacggcgttg atatgcatcc ccgcttcaat catgtcgggc gtgagaatgg
      661 tcgcgttggt tttatcggcg gtcaccgtgg tgacaatatc cgcgccttgt actgcctcgc
      721 gtatcgatgc cgcgcgggtg agcgtcagcc ccttgatgcc ggacaggttg cggatgagtt
      781 tctcggtagc ggcggggtcc gtgtcaaaaa cgcgaatatg ctcgacgccc agcatattct
      841 tgaacgccag cgcctggaac tcgctttgcg cgccgttgcc gatcaatgcc atcgacttcg
      901 atcccggccg cgcgaggacg cttgcggcga gcgcggaggt agccgccgtg cgcagcgccg
      961 tcatgatggt gaactcgctg agaagcaggg gaacaccggt ggcaacgtcg gcgagtacgc
     1021 cgaatgccat cacggtcagc atgttggcgc gggtattgtt gggatgcccg ttcacgtact
     1081 tgaagccgta taacgtgtga tcggctacgg gcatcagttc aatgacaccc tcgggcgaat
     1141 gcgccgccgt gcggggcgac ttgtcaaact ggggccagcg caggtagtcg gcgcggatgt
     1201 agtcggcgag ggtgtggatg aaggtttccg ggccgatggt gcgaagcagt tgcctgatgt
     1261 cgttgacgtc gatatatcga gtcatggtgc gttcctgaac gatgaagtga acttgagggg
     1321 ctacatgggt gtgttggtgt gcgagatcga tgcctagtgt ggaagtcagg cgccgagcag
     1381 cttgccggtg cgttgaggcg tggcaccagt cacgcggcca agcggatcgc cgtgcttcac
     1441 gaaacgcaca tcgcggcgca tgtagaacac gccgctggtt ttgctgtgga cggtggtggt
     1501 cccgccgctc gttgcatcga tgacgtcgaa gagcggctgg cccacttcga tcacgtcgcc
     1561 aagctgcgcg cgatgcacga ggatgccgcc tgcgggcgcg agaaactgtt cgctgccagc
     1621 aagcggggtg gcggggcccg caagctcggg caagggcggc gcaatgccgt ctatgaagcc
     1681 ttgatgcgtg aggtagtcaa tgatcgcctg cgcgtctttc cgcgccatct catacgacac
     1741 atcacgctgt ccgcgatgct cgaccgtgac ggacacggtg ccggttggaa tcggatagtg
     1801 ggcgccgaat tgctgcttca gttgccacca tgtcaggctc tgcgcttcat cgaaggaact
     1861 ggcgcctgag tcgtacgcga gtagcgatgc caccgcaccg agatagcgcg cgaggggttc
     1921 cgcctcggcc cagatcgcct ggccggtgta gacatgcatg gcggcttcgc gtgagcagtg
     1981 caggtccagc accacgtccg cgtcgtgcgc caacagcatg agctggcgtt gcaagccgtc
     2041 gaataacgtg gccggttgct gcgcgctcag cgctgctttc caggcttgac gaatgatgac
     2101 gagattttcg tcggcatctt gggtgagctt gccttcgagc gccgccgcaa tcttgccggc
     2161 gagcatggga aagtcgcgat tgtagttgcg gccgctcgcg aagtcgaagc ggccgacggg
     2221 agcgccgaac aaccattggc tcagtccaag cggattggcg ttgcagacca gcactacttc
     2281 agcacgaagc ttgccgtcgt cttcaagacg gcgcaactgc tcgagcagcg tgagtgcaac
     2341 catcacgccc ggcgtttcat cggcatgcag gcccgcctgg atgtacacct ttttgctacc
     2401 tccactcgga ccgaactgtc gactcgtcag atagtacgcg gcgccagcgg tcgcgtgggg
     2461 caaggcatgg gaggtgctgt tcatgggcag aaaatgggct cgtagtagcg gcaaggtcat
     2521 cttacgggga gttcgcgtgg cgcagaaggc ggcctgaccg atcgggatca gcctggcaga
     2581 tcgcctgtcg cacgaacccg gagtcggctt tgtttcgcca tcaggatcag gcgctcgtgc
     2641 cccgcagaag gcgcgagtaa gacaggagca tgctcacaag ctcatgcgcg accgtggtca
     2701 agggcgacgc gcggcggctg atgaggcaga cgtcacgcgg atcgaacgct tcgcgaatcg
     2761 ggatggtgac gagcgacggt gaaaacaact tgaactccga gagtaccgca ggctcgatgg
     2821 tcaggcagtc ggtttcggaa acaatgtgca gcgtttccag caacgactcc gccgtgaaga
     2881 cgatgcgtgg ggccccaagc gcttccgcct tgaaaagact gatcagccgg ttctccgcgc
     2941 caccggcaat gcccgcgggc cggatgctga cccagtcgca ctccaccagc tcacgcacgg
     3001 acgtgacatg tgcttgtgga tgacccttgc gcgcgatcac gcccgcgtcc gaccggtaca
     3061 ttcgctcgat gctgagatcg acgtcgctta catggggtgc
//
LOCUS       DATGBK010001072         1547 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_174541, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001072 DATGBK010000000
VERSION     DATGBK010001072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174541"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VKJ77_14975"
     CDS             <1..273
                     /locus_tag="VKJ77_14975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011465019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HMC46620.1"
                     /translation="IYQIIVMLLLPVQIYTGILMWDVKRFSAQVDFFGGVRVIDTVHV
                     LIFITFVFYVLVHVYLGTLGHTRMAHFKSMMTGYEEMDEDETAAER"
     gene            complement(307..>1547)
                     /locus_tag="VKJ77_14980"
     CDS             complement(307..>1547)
                     /locus_tag="VKJ77_14980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011465020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC46621.1"
                     /translation="RVKETHPNVDVIMVTGLSQIDTAVQAMKLGAFDYISKPFEPDEL
                     KLVVQRALERRRLLQENLTLKSELSSKYRFENIIGLSPQMQAVYRLIAQCAPTSSTVL
                     ITGESGTGKELIARAIHYNSLRKDKPFVPVDCNALSENLLESELFGHVKGAFTSAVVN
                     KKGMFEVAGSGTLFLDEIGNISMSIQAKLLRVLQEREFRAVGDTRTLIANFRLVTATN
                     KDLKAMVAAGTFRDDLYYRINIFPIHAPALRERKGDIPALAYHFLKVFSAELGKKITD
                     ISEGALSTLVNYGWPGNVRELENVMHRAAILTSDNVIRQAHLVNIVDSSQPQADLAVP
                     RTGDELKRVKKAAREKSVEEIEKQFVLEALKRNEWNVTKSAEETGMQRPNFQALMKKY
                     TIRVRDTEHNGDSTDIPDAS"
BASE COUNT          261 a          463 c          471 g          352 t
ORIGIN      
        1 atctaccaga tcatcgtgat gctgcttcta cccgtccaga tctacaccgg catcctgatg
       61 tgggacgtga agcgtttctc cgctcaggtc gatttcttcg gcggggtgcg cgtgatcgac
      121 accgtgcatg tcctgatctt catcaccttc gtcttctacg ttctggtcca cgtctatctc
      181 ggcacgctcg gccacacccg gatggcgcat ttcaagtcga tgatgaccgg ctacgaagaa
      241 atggatgagg atgagaccgc ggcggagcgc tgaacccgca ccgcgtttgc tgggcgcact
      301 aaccccttac gatgcgtccg ggatatcggt tgagtcgccg ttgtgctcgg tgtcgcgcac
      361 gcggatcgtg tatttcttca tcagcgcctg aaagttcgga cgctgcatgc cggtttcctc
      421 ggcgcttttg gtcacgttcc actcattgcg cttgagcgcc tcgagcacga actgcttctc
      481 gatctcctcc accgactttt cgcgcgcggc ctttttgacc cgcttgagtt cgtcgccggt
      541 gcgcggcacc gcgaggtcgg cctgcggctg agaggaatcg acgatgttga cgaggtgggc
      601 ctggcggatg acgttgtcgc tggtcaggat cgccgcccgg tgcatgacgt tttcgagttc
      661 gcgcacattg cccggccagc cgtaattgac cagcgtgctg agcgcgcctt cggaaatgtc
      721 cgtgatcttt tttccaagct cggcgctgaa taccttgagg aaatggtagg cgagcgccgg
      781 aatgtcgccc ttgcgctcgc gtagcgccgg ggcgtggatc ggaaaaatat tgatccggta
      841 atagaggtcg tcgcggaacg tgccggcggc caccatggcc ttgagatcct tgttggtggc
      901 ggtgaccagc cggaaattgg caatcagcgt gcgggtgtcg ccgacggccc tgaattcccg
      961 ctcctgcaac acgcgcagca gcttggcctg gatcgacatg gagatattgc cgatctcgtc
     1021 gagaaacagc gtgccgctgc cggcgacttc gaacatgcct ttcttgttca cgaccgcgct
     1081 ggtgaaagcg cccttgacgt gaccgaacag ctcgctttcc agcaggtttt cgctcaaggc
     1141 attgcagtcc accggaacga acggcttgtc cttgcgcagg ctgttgtagt gaatcgcgcg
     1201 ggcgatcagc tccttgccgg taccgctttc gccggtgatc aggacggtcg aactggtggg
     1261 ggcgcattgc gcgatgaggc gatagacggc ctgcatctgc gggctcaacc cgatgatgtt
     1321 ctcgaaacga tatttcgagc tgagctcgct cttgagggtg agattctcct gcaacagccg
     1381 ccgccgctcc agcgcgcgct gcaccaccag tttcagctcg tccggctcga acggcttcga
     1441 gatgtaatcg aaggcgccga gcttcatggc ctgcaccgcc gtgtcgatct gcgacagccc
     1501 ggtgaccatg atgacgtcca cattgggatg cgtctctttg acccggc
//
LOCUS       DATGBK010001073         1695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_82203, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001073 DATGBK010000000
VERSION     DATGBK010001073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82203"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1354)
                     /locus_tag="VKJ77_14985"
     CDS             complement(<1..1354)
                     /locus_tag="VKJ77_14985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC46622.1"
                     /translation="MRHDLDEAVIDTLRVPLDPVGLLPPAVQDTPPRHRARLAKRVPR
                     VAIVHDWLVAFAGAEKVLEQIIMCFPDADLFSVVDFMEERTWMRGKKVTTSFIQKLPQ
                     AKKRYRSYLPLMPLAIEQLDVSGYDLVISSSHAVAKGVLTGPDQIHVSYVHSPIRYAW
                     DLQHQYLQQSNLTSGVKSLLARMVLHYMRNWDVRTPNSVDYFIANSAFIARRINKVYH
                     RDSHVIFPPVDVEAFQLCDVKEDFYLTASRMVPYKKIDLIVEAFAKMPERKLVVIGDG
                     PDMRKIRDKATPNVEIMGYQPFSVLQDKMRRAKAFVFAAEEDFGISVVEAQACGTPVI
                     AYGKGGALETVLDGSHARPTGLFFDEQTTGAIIDAVEGFERGTFKINPADCRANAERF
                     SIKHFRDGLRAYVQSVAPQFTLAPPAMPPVPGVEPVAKATASQQHRDHAEADAMRSRG
                     L"
     gene            complement(1370..>1695)
                     /locus_tag="VKJ77_14990"
     CDS             complement(1370..>1695)
                     /locus_tag="VKJ77_14990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009895879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HMC46623.1"
                     /translation="FGPIGAASVVVLRSLVDYGLLLWISRIKARPIAADMLMHLAFLV
                     AGLGVAFFIDPIEYPLQSIAAAFVIAGLNFCCSLLTRPALRSMARGFVHELNVRLKRR
                     VKSTV"
BASE COUNT          363 a          515 c          499 g          318 t
ORIGIN      
        1 taaggccacg gcttcgcatt gcatcggcct ctgcgtgatc ccggtgctgc tgcgaagccg
       61 tggccttagc gaccggttcg acgcccggca ccggtggcat ggcaggcggt gcgagcgtaa
      121 attgaggtgc aacgctctgc acgtaggcgc gaagaccatc gcggaaatgc ttgatcgaga
      181 accgctcggc attcgcccgg caatccgcag gattgatctt gaacgtgccg cgttcgaacc
      241 cctccacggc gtcgatgatc gctccggtcg tctgttcatc gaagaagagg cccgtcgggc
      301 gcgcgtgtga accatccagc accgtttcca gcgcgccgcc tttcccgtaa gcgatcaccg
      361 gcgtaccgca cgcctgagcc tctaccaccg agatgccgaa atcctcttcg gccgcgaaca
      421 caaacgcctt cgcgcgccgc atcttgtcct gcaaaaccga gaacggctga tagcccatga
      481 tctcgacgtt cggcgtggcc ttgtcgcgga tcttgcgcat gtcggggcca tcgccgatca
      541 cgaccagctt gcgctccggc atcttcgcga acgcttccac aatcaaatcg atcttcttgt
      601 aaggcaccat ccgcgacgcc gtcagataga agtcttcttt cacgtcgcaa agctggaacg
      661 cttcgacatc gacgggagga aatatcacat gcgaatcgcg gtgataaacc ttgttgatcc
      721 gtcgcgcgat gaacgccgag ttcgcgatga aatagtccac cgaattcggc gtgcgaacgt
      781 cccagttgcg catgtagtgc agcaccatac gtgcgagcag cgacttcacg ccggacgtga
      841 gattcgattg ctgcaagtac tgatgctgca gatcccatgc atagcgaatg ggcgaatgca
      901 cgtagctcac gtgaatctgg tcgggacctg tcagaacgcc cttcgccacg gcatgactgc
      961 ttgaaataac gaggtcatag ccggacacat cgagctgttc gatcgcgagc ggcatcagcg
     1021 gcagatagga gcggtaacgc tttttcgcct gcggcaactt ctggataaac gaggttgtga
     1081 ccttcttgcc gcgcatccac gtccgctctt ccatgaagtc gacgacgctg aaaagatcgg
     1141 cgtcgggaaa acacatgatg atctgttcaa gcaccttctc cgcgccggcg aaagcgacga
     1201 gccagtcatg cacgatcgcg acccgcggca cccgtttcgc gagccgcgcg cggtgccggg
     1261 gtggcgtgtc ctgcacggca ggcggcagca ggccgacagg gtcgagcggc actcgcagcg
     1321 tgtcgatgac cgcttcatcg agatcatgtc tcatgtgtct ctcctcacct taaaccgtgg
     1381 atttcacgcg ccgtttcagg cgcacattta actcatggac aaagccgcgc gccatggagc
     1441 gcagcgcggg ccgtgtgaga agggagcagc aaaaattaag gccggcgatg acaaatgctg
     1501 ctgcgattga ttgcagcggg tactcgattg ggtcgatgaa aaacgctaca ccgaggcctg
     1561 cgacaagaaa cgcgagatgc atcagcatgt cggcggcaat gggccgggct ttaatacgcg
     1621 agatccacaa cagcaggccg tagtcgacca gcgagcgcag cacgactacg ctggccgcgc
     1681 cgatagggcc gaaac
//
LOCUS       DATGBK010001074         2432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_82213, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001074 DATGBK010000000
VERSION     DATGBK010001074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82213"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..522)
                     /locus_tag="VKJ77_14995"
     CDS             complement(61..522)
                     /locus_tag="VKJ77_14995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004550374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HMC46624.1"
                     /translation="MRPPRLDQLDDIDRNLVASLQVNARESVSELARQLGIARTTVIA
                     RLARLEKTGVIAGYGVRLGQDVLDASIQAYVGIKLAPKYGRDVQKRFARMPEMQLLCA
                     VSGEFDYVAWLRADSPDRLNDLLDEIGGLEGVERTTTSIILARKVDRGGLG"
     gene            885..1406
                     /locus_tag="VKJ77_15000"
     CDS             885..1406
                     /locus_tag="VKJ77_15000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HMC46625.1"
                     /translation="MKKTFVALAASLALSTAFAQSSAPAAPAAPAGASAPDTARGQAR
                     EARVEQRISELHAKLKITPAQDEQWNKFADVMRDNGHTMGDLYRQRMALGENTSALDD
                     MKQYEQITQAHADGTKHLVEAFEPLYASLSPEQKKLADASFHQSGKPGEHKGRAPHRK
                     APAAADGASTTKP"
     gene            1587..2024
                     /locus_tag="VKJ77_15005"
     CDS             1587..2024
                     /locus_tag="VKJ77_15005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011004534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PGDYG domain-containing protein"
                     /protein_id="HMC46626.1"
                     /translation="MTPTTLTHLDLTTDPAAHGVVKDETVTVQFAEKPGSLMSLEGPN
                     RYAPGDALITGATGERWVVSRDRFDAKYVAHDGLTHGHAGAYRNVPVAVLAKQMQEAF
                     SIARSEAGDVLYGEAGDWVMQYAPGDYGVVKAARFAKVYKRAS"
     gene            complement(2079..>2432)
                     /locus_tag="VKJ77_15010"
     CDS             complement(2079..>2432)
                     /locus_tag="VKJ77_15010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3022 domain-containing protein"
                     /protein_id="HMC46627.1"
                     /translation="QYDCPSADIELLARVVSDLFPEQTQFSERPGDDGQLSLVIHYVA
                     MRFGATARRIAIDIRFDPAALARYRAMPPRLHARSYAVLRAYVEATLGSLEEMYAAGE
                     AVPRTVEIDIGEDFA"
BASE COUNT          522 a          760 c          692 g          458 t
ORIGIN      
        1 tgacgactct atgcgacaaa ttgcatgaaa tcgctcagtt taccctgtcg aacgagcatc
       61 tcaacctaag ccgccacggt ccactttgcg agcaagaatg atcgatgtcg tcgtgcgttc
      121 gacgccttcc aggccgccga tttcatcgag gagatcgttc agccggtccg gggaatcagc
      181 acgcagccac gcgacataat cgaactctcc gctcactgcg caaagcagct gcatctcggg
      241 catcctggcg aaacgcttct gcacatcgcg accatacttc ggcgccagtt tgatgcccac
      301 gtaggcctgg atgctggcgt cgagcacgtc ttgtcccagc cgcacgccat accctgctat
      361 cacgccggtc ttctcaagcc gcgcaagccg ggcgatcacc gtcgtgcgcg caatgccgag
      421 ttgacgcgca agctcggaca cgctttcacg ggcgttcacc tgcaaagacg caacaaggtt
      481 ccggtcgatg tcgtcgagct gatcgaggcg cggcggtcgc atggggcgtg atcctttgtt
      541 tgattttgtt tgaacaagtg aaagtacggc atgacgtcat gaacaatttc acgcgcgtaa
      601 tagagcgtga caacagcgtg aaacaacaaa gccattaaaa cacgagcgca tcaaactgcg
      661 gccgctcccg cttgttggtt aaactcctac cgctgcgaac ccggcttgct ccggagttgc
      721 gccttcactg cgtttttttc gcagaggtat cggttgtaag cagttgtggc aatcaaagca
      781 acgccgcgcg ctaacgtgat attaatagcg gcgtcggcca aacatcacac gttgtccttc
      841 ccgtgtattg cttgcccctt cttaatggac ccaaggtgtc acccatgaaa aaaacattcg
      901 ttgcactggc tgcctcgctg gccctttcca cggctttcgc ccaatcgtcc gctccggcag
      961 cgcctgctgc gcccgcaggc gcatcggcgc cggatacggc acgcggccag gcgcgtgaag
     1021 cacgcgtcga gcaacgcatt tcggaactgc atgccaagct caagatcacc cctgcgcagg
     1081 acgagcaatg gaacaagttc gccgacgtca tgcgcgacaa cggccacaca atgggtgatc
     1141 tgtaccgtca acgcatggcg ctgggcgaga acacgagtgc gctcgacgac atgaagcagt
     1201 acgagcagat cacccaggca cacgcggacg gtacgaagca tctggtcgag gccttcgagc
     1261 cgctgtacgc aagcctttca cccgagcaga agaaactcgc cgacgcaagc ttccaccagt
     1321 caggcaagcc gggcgagcat aaaggccgcg cgccccatcg caaggcgccg gcagcggcag
     1381 atggtgcttc gaccacaaag ccctgagctt tcggtagcgg cttgatctga aggctgaact
     1441 tcgcgtctag ttgcatggcc tagtcccgtg aaaaatcgct cgcatcgtgg tttcgatgcg
     1501 ggcgatttca cattacggta tgcacaatgg gaacttggcg ttacgatcgc ggattattat
     1561 cgttgcagcg tttccatgac atccgcatga caccaaccac ccttacccac ctcgacctca
     1621 ccactgaccc cgccgcgcat ggcgttgtca aagacgaaac cgtcacggtc cagtttgcag
     1681 agaaacccgg ctcgctgatg agcctggaag gcccgaaccg ctatgctccc ggcgatgcgt
     1741 tgatcacagg cgctaccggc gagcgctggg tggtatcgag ggatcggttc gacgcaaagt
     1801 acgtcgcgca cgacgggctc acgcatggcc atgccggtgc gtaccggaac gtgcctgtcg
     1861 cagtcctcgc gaagcaaatg caagaagcgt tttcaatcgc gcgatctgaa gccggcgatg
     1921 tcctttacgg cgaagcaggc gactgggtca tgcaatacgc gccgggcgac tacggggtag
     1981 tcaaggccgc ccgtttcgcg aaggtatata agcgcgcttc ataagcgcgc cctataagcg
     2041 cgtacgcagt gcaaggcctg gctactctgc acccaggctc acgcaaaatc ctcgcctata
     2101 tcgatctcca ccgtgcgcgg caccgcttcc ccggctgcgt acatctcctc gagcgaaccg
     2161 agcgtggctt ccacataggc gcgcagcacc gcataactgc gcgcgtgcag acgcggcggc
     2221 atcgcccggt aacgcgcgag cgcggcggga tcgaagcgga tatcgatggc tatgcggcgc
     2281 gccgttgcac caaagcgcat tgccacataa tgaatcacga gtgaaagctg gccgtcgtcg
     2341 cccgggcgct cggagaactg cgtctgctca gggaacaggt cgctgaccac gcgcgccagc
     2401 aattcgatgt cggcgctcgg gcagtcgtat tg
//
LOCUS       DATGBK010001075         1502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_244266, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001075 DATGBK010000000
VERSION     DATGBK010001075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244266"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1120
                     /locus_tag="VKJ77_15015"
     CDS             <1..1120
                     /locus_tag="VKJ77_15015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HMC46628.1"
                     /translation="RTVHYLKDGKVSSFEARRVVLATGALERPFPIPGWTLPGVMTAG
                     AAQILLKSAGEVPAEPPILVGCGPLLYLLGWQYVRAGVPIRALVDTTRHEDRWRAKRH
                     MLSALRAWPYLSKGLQLMRTLREAGVPMHEAADDLRVESGIDEDGSERARALNFSVRG
                     VSHRIEANVILLHQGVVPNTQFTLSLRALHKWDEAQLCFAPVTDQWGELDVPGIFVAG
                     DGGGIGGAQAAETQGEVTALAIAAQLGVIDTAARNRSAAPLLRRLADVMRIRPFLDSL
                     YRPRDENRVPKDEVIVCRCEEVTAGELRSFVKLGCLGPNQAKSFGRCGMGPCQGRLCG
                     LTVTEVIADARSVSPETVGYYRIRPPIKPLTLGELAGE"
     gene            1113..>1502
                     /locus_tag="VKJ77_15020"
     CDS             1113..>1502
                     /locus_tag="VKJ77_15020"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008348086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC46629.1"
                     /translation="MNKPVANESDVLIIGGGLHGSSSAFHIARRGVNVTVLEADYVGR
                     HASGVNAGGVRTLGRPLPEIPLALMSREIWHNIVDTIGDDAGFVASGQLKIAETEAEL
                     DECRERVALLEAHGFTHEKIIDRETLLE"
BASE COUNT          263 a          437 c          514 g          288 t
ORIGIN      
        1 gcgtacggtg cactacctga aggacggtaa ggtgagcagc ttcgaggccc ggcgcgtggt
       61 cctcgccacc ggcgcgctgg aacggccctt cccgattccc ggctggacct tgcccggcgt
      121 gatgaccgcg ggtgccgcac agatcctgct gaaaagcgcg ggcgaagtgc ccgccgagcc
      181 gccgatactc gtcggctgcg gaccgctgct ttacttgctc ggctggcagt acgtccgcgc
      241 gggtgtacct attcgcgcgc tcgtggacac gacgcgtcac gaggaccgct ggcgcgcgaa
      301 gcggcacatg ttgtccgctt tgcgcgcgtg gccgtatctg agcaagggcc tgcagttgat
      361 gcgcacgttg cgcgaagcag gcgtgccaat gcatgaagcc gccgacgacc ttcgggtaga
      421 aagcggtatc gatgaagacg gttccgaacg ggcgcgcgcg ctgaattttt cggtacgtgg
      481 cgtgtcacat cggatcgagg ccaacgtgat cctgctgcat cagggcgtgg tgccgaatac
      541 gcagttcacg ctttcgctca gggcgttgca taagtgggat gaagcgcagt tatgcttcgc
      601 gccggtcacc gatcaatggg gcgagctcga tgtccccggc atcttcgtcg caggcgatgg
      661 cggcggcatt ggcggcgcgc aggcagcgga gacgcaaggc gaagtgacgg cgctggcaat
      721 tgccgcgcag cttggcgtga ttgataccgc cgcgcgcaat cgcagcgccg caccgctgct
      781 tcgccgcctg gccgatgtca tgcgtattcg ccctttcctc gacagtcttt atcgtccgcg
      841 cgatgaaaat cgtgtgccga aggacgaggt gatcgtgtgc cgctgcgaag aggtgactgc
      901 gggcgaactg cggagttttg tgaagctcgg ctgcctcggg ccgaaccagg cgaagtcctt
      961 cggccgatgc ggcatgggcc catgtcaagg tcgcttgtgc gggttgaccg tgactgaagt
     1021 gatcgccgat gcacgtagcg tgtctcccga aaccgtgggc tactatcgca tccgtccgcc
     1081 gatcaaaccg cttacgctcg gagaactggc cggtgaataa gcctgtagcc aatgagtcgg
     1141 acgtgctgat catcggcggc gggctgcacg gttcgagcag cgcatttcat atcgcgcgcc
     1201 gcggggtgaa tgtgaccgtg ctggaagccg actatgttgg tcgccatgca tcgggcgtca
     1261 atgcaggtgg agtgcgcacg cttggccggc cattgcccga gattccgctg gcgctgatgt
     1321 cgcgggagat ctggcacaac atcgtcgata caattggtga cgacgccggt ttcgtggcgt
     1381 cgggccagtt gaagatcgcg gagaccgaag ccgaactcga tgaatgccgc gaacgcgtag
     1441 cgctgctcga ggcgcatggt ttcacgcatg agaaaatcat cgaccgtgag accttgcttg
     1501 ag
//
LOCUS       DATGBK010001076         1785 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_336547, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001076 DATGBK010000000
VERSION     DATGBK010001076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336547"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(49..>1785)
                     /locus_tag="VKJ77_15025"
     CDS             complement(49..>1785)
                     /locus_tag="VKJ77_15025"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46630.1"
                     /translation="ELYKQFALTIAATISISAFTALTLAPALASLMLEGEAPRHGALM
                     RAVGNFIERVRGGYNRLLPAVQKRRGIVLVVFAGLLALTVFMFKVVPTGFVPDEDQGY
                     FVVVAQGPPGSSLEYTNGIMNQAQHILRSEPDVVNIFSVAGFSFFGSGPNNGIMFASL
                     KPWSERHGKDQSAQAILARLGGQLFGITGASVFAFNPPAIQGAGNVGGFDLEVEDQAG
                     LGIPALATTAGMTMFKGNSDPMLTNVFTTFRADSPQVQLNIDRDAVQALHVKLGDVFD
                     TLQILLGSDYVNDFNYRNKSYRVYVQADAPFRSHIADLGQYAVKNDSGSMVPLSSFIT
                     VQRTLGPPAIYHYNLFRSIEFNGSPKPGVASGTALDEMQNIMKQILPPGMSYEWTGTS
                     LDQIEAGSATIAIFGLAVVFVFLVLAAQYESLVDPLIIIMAVPLAILGALTAVYLRGL
                     QNDIFCQIGLVMLVGLASKNAILIVQFGNLLRAQGMPVAKAAIEAAKTRLRPILMTSF
                     AFIFGIMPLVFASGAGQASRHSLGTAVVGGMLLSTLLNLFVIPVLYAIIAGAEDRFRE
                     RRRARLESQAPQ"
BASE COUNT          369 a          542 c          543 g          331 t
ORIGIN      
        1 ctacagatgt ccgcgtgggg cctcgttctc ctgttggccg cgcgacttct actgcggcgc
       61 ttgcgactcc agtcgcgcgc gacgccgctc gcggaaccga tcctcggcgc ctgcgatgat
      121 cgcatacagc acaggtatga cgaaaagatt caatagcgtc gagagcagca tgccgccgac
      181 aacggcggtg ccgagcgaat ggcggctcgc ctggccggca ccgcttgcga acaccagcgg
      241 catgatgccg aagatgaacg cgaacgacgt catcaaaatc ggccgcagtc tggttttcgc
      301 cgcttcgatg gcggctttag ccaccggcat accctgagca cgcaatagat taccgaactg
      361 cacgatcaga atagcgttct tactcgcgag gcccacaagc atcacgagac ctatctgaca
      421 gaagatatca ttttgcaacc cgcgcaggta gaccgcggtg agcgcgccga gaatggcgag
      481 cggcacagcc atgatgatga tgagcgggtc gacgagactt tcgtattgcg ccgcaagcac
      541 gaggaacacg aagaccaccg cgagaccgaa gatcgcgatc gtggcgcttc cggcttcgat
      601 ctgatccagc gacgtgcccg tccactcgta gctcatcccg ggcggtaaga tctgtttcat
      661 gatattctgc atctcgtcga gcgccgtgcc cgacgccaca cccggcttcg gactgccgtt
      721 gaactcgatc gaccggaaca gattgtagtg gtagatagcc ggcggtccga gcgtccgttg
      781 gacggtgatg aacgaactca acggcaccat cgagccgctg tcgttcttca cggcatattg
      841 accgagatca gcgatgtgcg accggaacgg cgcgtcggct tgcacgtaga cgcgatagga
      901 tttgttgcgg taattgaaat cgttgacgta atcagaaccg agcaatatct gcagcgtatc
      961 gaagacgtcg cccaatttca cgtgcagcgc ctggaccgcg tcgcgatcga tgttcaactg
     1021 cacttggggg ctatcggcgc ggaacgtcgt gaacacgttg gtgagcatcg ggtcggagtt
     1081 gcccttgaac atcgtcatgc cggctgtcgt ggccagtgcc ggaatcccca aacccgcttg
     1141 gtcctcgact tcgaggtcga agccgccaac gttgccggcg ccctggatgg ccggcggatt
     1201 gaacgcgaac accgacgcgc cggtgatgcc gaagagttgc ccgccgaggc gcgctaatat
     1261 cgcttgtgcg gattgatcct ttccgtgccg ttccgaccac ggcttcagcg atgcgaacat
     1321 gatgccgttg ttcggcccgg agccgaagaa cgagaatccg gcgacgctga agatgttcac
     1381 cacgtcgggc tcggagcgca agatgtgctg cgcctggttc atgatgccgt tcgtgtactc
     1441 tagcgaagaa ccgggcggcc cctgcgccac caccacgaaa tagccttggt cttcgtcggg
     1501 gacaaagcca gtcggcacga ctttgaacat gaatacggtg agcgcgagca ggcccgcgaa
     1561 cacgaccagc acgatgccgc gtcttttttg caccgccggc agaaggcggt tgtatccgcc
     1621 gcgcacgcgc tcgatgaagt ttccgaccgc ccgcatcaac gcgccgtgtc ggggcgcttc
     1681 accctcgagc atcaacgacg caagggccgg tgcgagcgtc aacgcggtga acgccgaaat
     1741 ggatatcgtc gccgcgatcg tgagggcgaa ctgcttgtac aactc
//
LOCUS       DATGBK010001077         2911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290893, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001077 DATGBK010000000
VERSION     DATGBK010001077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290893"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..334
                     /locus_tag="VKJ77_15030"
     CDS             <1..334
                     /locus_tag="VKJ77_15030"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HMC46631.1"
                     /translation="IESRAGVEAADAIAAVEGVDILAVGCNDLSADLGHTGESTHPEV
                     VQACRRVIAAARRCGKVAIVGGMPDSDALTSLRNEGAAPFIFAGIDTDLFLNALRQRI
                     ESSRAAFL"
     gene            388..1266
                     /locus_tag="VKJ77_15035"
     CDS             388..1266
                     /locus_tag="VKJ77_15035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007856967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC46632.1"
                     /translation="MAEIPLISTPMRAFDTLSRPAFEMPAHACDAHMHAFGPEALYPH
                     VEHPHYTLPDGKLDAYLQLMNVLQLERFVIVQPSFYGTDNHCLIDTLNAAGPIARGVV
                     MIEEGTDAATLDRFHRAGVRAVRLDLFARSALPTEEIQQYITRMAQLCTSLGWHVQFY
                     APGWVVRNLIPFLADVQSDFVIDHMGYMLEEDGLTPADFERLLNLLKDGNCWLKLSAP
                     YRIAKHRGYDAVAPMAQKIIDAAPHKVIWGSDWPHIPDSTRDTGELLNLLGVWTEDPK
                     VRQMILSDNPARLFDY"
     gene            1291..2448
                     /locus_tag="VKJ77_15040"
     CDS             1291..2448
                     /locus_tag="VKJ77_15040"
                     /inference="COORDINATES: protein motif:HMM:NF037843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5624 domain-containing protein"
                     /protein_id="HMC46633.1"
                     /translation="MTYQPHPAFAALFRAFTSDPASIGNQLTQQMTQREAHAPLLVST
                     GSDIVLFPGGGRPASIESFRKSTRGFIELTAVSHLPLAIAYLARMRELGTRDNAWQHD
                     AAKLMVHARNTREANSPALWRDEIAVQSLAGFDVKLANLVDYTCATTIDLLERVADEP
                     TLMSFDSLRDRYFAPLDSDVVPVPMNDVMFATFGLAFLDIVYRIGNWLRTQELDWARL
                     MVLVSGRSGRPTAGATWATNNMCHLIWRVSGGALPPERVFVAPFAPSFSVAELPDAAG
                     LVALENMYRTLWQNTRASIDVARELFPDHPGYRFEPAAAECMPPITSVNDRDATTARL
                     RRIMEDPSQLLSNCVADYIVDQLQANGNHPESVEIPGFTNVTYPGPSTRWP"
     gene            2567..>2911
                     /locus_tag="VKJ77_15045"
     CDS             2567..>2911
                     /locus_tag="VKJ77_15045"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46634.1"
                     /translation="MNHLEVAPSGGRAVRSVICITLVCFAVSMIDGFDTLMLSFVAPL
                     LAKSLQIDHASLGRVFGAGFVGTVLGSLIIGPLADRFGRRKMLVLALVVTGGFTLACA
                     FASSAGTLAALRF"
BASE COUNT          545 a          880 c          884 g          602 t
ORIGIN      
        1 gatcgagagc cgcgcaggtg tggaggcggc tgatgcgatt gcagccgtcg agggcgtgga
       61 catactggca gtcggctgca acgacttgag tgccgacctg gggcacaccg gcgagtcgac
      121 gcatccggag gtagtgcaag cgtgccggcg cgtgattgcc gccgcccggc gttgcggcaa
      181 ggtggcaatc gtcggaggca tgccggatag cgacgcattg acgagcctca ggaacgaagg
      241 ggccgcgccc ttcattttcg cgggcatcga cacggacctg ttcctgaacg cgctgcggca
      301 acgaatagag agtagccgcg cggcatttct ctaaagctac ccacgccctc caagtccaac
      361 taacctgatc attcacgacc tacattcatg gccgaaattc cgctgatatc gaccccgatg
      421 cgtgcgttcg acacgctgtc acgccccgcc ttcgagatgc ccgctcatgc ttgcgacgcg
      481 cacatgcacg cgttcggccc ggaggcgctg tatccccacg tggagcatcc gcattacacc
      541 ttgccggacg gtaagcttga cgcttacttg cagttgatga acgtgcttca actcgaacgg
      601 ttcgtgatcg tgcaaccgag tttctacggc accgataacc actgcctgat cgacaccttg
      661 aacgctgccg gtccgattgc gcgaggcgtg gtgatgatcg aagagggtac cgacgcagcc
      721 acgcttgatc gcttccatcg agcaggcgtt cgtgccgtgc ggctcgacct gtttgcgcgc
      781 tcggcgttgc cgaccgagga gattcagcag tacatcaccc gcatggcgca gctgtgcacg
      841 agcctcggct ggcatgtgca gttctacgcg ccgggctggg tcgtgcgcaa cctcattcca
      901 ttcctggcgg atgtgcaatc ggacttcgtg atcgatcaca tggggtacat gcttgaagag
      961 gatggtctca cgccggcgga tttcgagcgc ctgctgaacc tgctcaagga tggcaactgc
     1021 tggctcaagc tcagcgcacc gtaccggatc gccaagcatc gtgggtacga cgccgttgcg
     1081 ccaatggcgc agaagatcat tgacgcggct ccgcacaagg tgatctgggg ttccgactgg
     1141 ccgcacattc ccgattcgac tcgcgacacc ggtgaactgc tcaatctgct tggcgtgtgg
     1201 acggaagacc caaaggttcg ccagatgatt ctctccgaca accccgcacg gctgttcgat
     1261 tactgatatg catcacggag ccttcaggcg atgacttatc aaccgcatcc cgcctttgcc
     1321 gcgctgttcc gcgcgtttac atcggacccg gccagcattg gcaaccagct gacgcaacag
     1381 atgacgcagc gcgaggcgca cgcgccgctc ctggtgtcga ctggctcgga catcgtgctg
     1441 tttccgggcg gcggacggcc cgcgtctatt gagagctttc gcaaatcgac gcggggcttc
     1501 attgaactga ccgccgtatc gcacctgccg cttgccattg cctacctcgc acggatgcgc
     1561 gaacttggca cccgcgacaa cgcctggcag cacgacgccg cgaagttgat ggttcatgca
     1621 cgcaatacgc gcgaggccaa ttcaccggcg ctatggcgcg acgagatcgc cgtccagagt
     1681 ctggcgggct tcgatgtgaa gctggcaaat ctggtcgact atacgtgcgc caccacaatc
     1741 gatctacttg agcgtgtagc agacgaaccc acgttgatga gcttcgattc cttgcgtgat
     1801 cgctatttcg cgccgctcga ttccgacgtg gtcccagtgc ccatgaatga cgtgatgttc
     1861 gcgaccttcg gtctcgcgtt cctcgatatt gtgtatcgca tcggcaactg gctgcgcaca
     1921 caggaactcg actgggcaag gctgatggtg ctggtcagtg gcaggtcggg ccgcccgacg
     1981 gctggtgcga cctgggcgac caacaacatg tgccatctga tctggcgtgt ctccggagga
     2041 gcgttgccgc cggagcgcgt attcgttgca ccgtttgcgc catcattctc ggtggctgag
     2101 ttaccggacg cagcgggtct ggttgcgctc gaaaacatgt atcggacgtt atggcagaac
     2161 acccgtgcaa gcatagatgt ggcgcgtgaa ttgtttccgg atcatccagg gtatcgcttt
     2221 gaaccggcag ccgccgagtg catgcccccg atcacgtcgg tgaatgaccg cgatgccact
     2281 accgcgcgtc tcagacgcat catggaagac ccgtcgcaac tgttgtcgaa ttgcgtagcc
     2341 gactacattg tcgatcagtt gcaggccaac ggaaaccatc cggagagcgt ggagattcca
     2401 ggcttcacga acgtgacgta tcccgggcct tcgacgaggt ggccttagcc tcgcagcaga
     2461 cgccgtaggt aataagacat tggcatcgca gggcggtggt gccgatttga atagaaagcc
     2521 cgcatacaac aatctgcatg ggaccagagt aaggagacgt tacaccatga atcatctcga
     2581 agttgcaccc tccggaggcc gggctgtccg ctcggttatc tgcatcacgc tcgtctgctt
     2641 cgcggtctcc atgatcgatg gattcgacac gctgatgctg tcattcgttg cgccgctgct
     2701 ggcgaaatcg ttgcagatcg atcatgcatc gctcgggcgc gtgttcggtg cgggttttgt
     2761 cggcacggtg ctgggctcgc tgatcattgg cccactcgcc gatcgcttcg gccgcaggaa
     2821 aatgctggtg ctcgcattgg tcgtgaccgg gggcttcacg ctggcctgcg cattcgccag
     2881 ttcggccggc acgctcgctg cattgcggtt t
//
LOCUS       DATGBK010001078         1809 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313726, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001078 DATGBK010000000
VERSION     DATGBK010001078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313726"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..539
                     /locus_tag="VKJ77_15050"
     CDS             <1..539
                     /locus_tag="VKJ77_15050"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46635.1"
                     /translation="VLELVRAGDADMGVLTGPLGDRDSNDLCDLSTETLFSDHVYAIL
                     PTRHTLASHATVRWRDLSGATLFLLDDDTGSFDVIARALDEYGASNVRLQRLTQAASV
                     VQMVAAGLGIGIQPMHAGAASAQALVQPVPLWPSVMRTVLLVKRKSRTLPVQAARIWT
                     HVVSSYDEEHKPLQTAHA"
     gene            676..1704
                     /locus_tag="VKJ77_15055"
     CDS             676..1704
                     /locus_tag="VKJ77_15055"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008677 - 2-dehydropantoate 2-reductase
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HMC46636.1"
                     /translation="MKICIYGAGAIGGYMGAQLARAGADVSFVARGPHLAAMQANGVR
                     LQIDGEEHTVKVRCTNNPAELGPQDYVVIALKAHSVPGVVDLMQPLLGPDTAVVTAVN
                     GLPYWYFHEHGGALAGTTLESVDPGGRQWQVLGPERAIGCVLIPAAEIAEPGVIRHVY
                     GKKFPIGEPSGLVTPRLQAFHDIMSAADMEAPMRDNIRDEIWLKLWGNLCFNPISALT
                     GATLDVLTSDPAVRKLSRQMMEEAQGIAEQLGVHFRVDVEKRINGAAAVGAHKTSMLM
                     DCEARRPMEIDPIVTVVQEIGRKLGVDTPMIDTVLALIKLREGVNQGTAKPGIKTIES
                     FTRSQKAA"
BASE COUNT          370 a          501 c          567 g          371 t
ORIGIN      
        1 gggtgcttga actcgtgcgc gccggcgatg ccgacatggg cgtgctgacc ggtccgctgg
       61 gtgacaggga ctccaacgac ctctgcgatt tatcgacgga aacgcttttc tccgaccatg
      121 tctacgcgat cctcccaaca cgtcatacgc ttgcgtcgca tgccacggtg cgatggcgtg
      181 acctgagcgg tgcgactctg ttccttctag acgatgacac cggcagtttc gatgtcatcg
      241 cgcgtgcgct cgatgaatac ggtgcgtcga atgtcaggct tcagcggctg acccaggccg
      301 cgagcgtcgt gcagatggtc gcggcgggcc ttggaattgg catccagccg atgcacgcag
      361 gtgcagcgtc cgctcaagcg ctggtccaac cggtgccgct atggccgtca gtcatgcgaa
      421 ccgttttgct ggtgaagcgg aagagccgca cgttgccggt gcaggcagcg cgtatctgga
      481 cgcacgtcgt ttcgtcctat gatgaggaac ataagccgct gcaaaccgct cacgcctgac
      541 ctttaatcca ctgaatgttc gaagcgcggc tccttgaaaa agagtcgcgc ttttttcttg
      601 cgctttcttc tttgttatcc aatactgaat ctaatatgtt gtatatcaga agagagaatg
      661 gtctaggaga cgacaatgaa aatttgcatt tacggtgccg gcgcgattgg cggttacatg
      721 ggtgcgcaac tggcccgagc gggagcggat gttagtttcg tcgcacgggg gccgcatctg
      781 gctgccatgc aggcgaacgg cgtgcgcttg cagatcgatg gtgaggagca caccgtcaag
      841 gtccgttgca cgaacaatcc cgcggaactc gggccgcagg attacgtggt gattgcgctc
      901 aaggcccatt cggtgcctgg cgtggtcgac ttgatgcaac cactgctggg gccggataca
      961 gcggtggtta ctgcggtgaa cggtttgcct tactggtatt tccatgaaca cggcggcgcg
     1021 ctggccggca ccacgctgga aagcgtcgat ccgggcggcc ggcaatggca ggtgcttggg
     1081 cccgagcggg cgataggctg cgtgctgatt cccgccgccg aaattgcgga gcccggcgtg
     1141 attcgccacg tatatggcaa gaaatttccg atcggcgagc cgagcgggct ggtgacgccg
     1201 cgcctgcagg cgttccacga catcatgagc gccgccgaca tggaagcgcc gatgcgcgac
     1261 aacatccgcg acgagatctg gctgaagttg tggggcaacc tctgtttcaa ccccatcagc
     1321 gcgctgacag gcgccacgct cgatgtcctc accagtgatc cggcagtacg caagctgtca
     1381 cgccagatga tggaggaggc gcagggcatt gccgagcagc taggcgtcca tttccgtgtc
     1441 gatgtggaaa agcgcatcaa cggtgcggct gcggtcgggg ctcacaagac ctcgatgttg
     1501 atggattgcg aagcgcgccg gccgatggag atcgatccga ttgtgaccgt cgtgcaggaa
     1561 atcggccgga aactgggcgt cgacacgccg atgatcgata ccgtcctcgc actgatcaag
     1621 ttgcgggaag gcgtcaacca gggaacggcc aagcccggta tcaaaacgat tgaatccttc
     1681 acacgttcgc aaaaagccgc ttaaactgcg aacatagaag ggctgttgtt tctgatatat
     1741 cacatacgaa atatgttgcg ttgcgctgca acgcaacata tactgaaggc tcttggagta
     1801 aaccactag
//
LOCUS       DATGBK010001079         1711 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_198406, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001079 DATGBK010000000
VERSION     DATGBK010001079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198406"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..627
                     /locus_tag="VKJ77_15060"
     CDS             <1..627
                     /locus_tag="VKJ77_15060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013958066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ornithine
                     acetyltransferase/N-acetylglutamate synthase"
                     /protein_id="HMC46637.1"
                     /translation="AAVTQPVLDTLIKHVADRSFNCITIDGDTSTNDSFIVIASGKSS
                     LPLITSTDSAAYVALRDAVTSVAQELAQLIVRDGEGATKFMTVTVEGGTSEAECRLIA
                     YAIGHSPLVKTAFYASDPNLGRILAAIGYAGVADLDVNKIDLYLDDVLVAKSGGRNPE
                     YREEDGQRVMKKSEIAIRVLLGRGQAEATIWTCDLSHDYVSINADYRS"
     gene            644..1507
                     /locus_tag="VKJ77_15065"
     CDS             644..1507
                     /locus_tag="VKJ77_15065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007747098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC46638.1"
                     /translation="MDKLEQFLTRAEAVLARVEGMLPPAPPEIDWNSAVAFRWRKRQG
                     RGFLQPVPNLSPLSLDDLCNIERQKGLIEQNTRQFVRKAPANNVLLTGARGTGKSSLI
                     KACLNAYHTEGLRLIEVDKDDLHDLGDIVDLISARPERFIVFCDDLSFEDGESGYKAL
                     KVALDGSISAQSDNVLIYATSNRRHLLPEYMSDNETYKHTSDGEIHPGEVVEEKISLS
                     ERFGLWVSFYPFKQDDYLTIVGHWLKHFGCEAEEIAGARGDALVWALERGSRSGRVAW
                     QFARDWSGRKA"
     gene            1504..>1711
                     /locus_tag="VKJ77_15070"
     CDS             1504..>1711
                     /locus_tag="VKJ77_15070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020747463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HMC46639.1"
                     /translation="MTASTSTTTSVSNTAPDGRRVTDVAVGVLVQPDGRYLLAQRPEG
                     KPYEGYWEFPGGKLEAGESVEVALT"
BASE COUNT          345 a          498 c          542 g          326 t
ORIGIN      
        1 gccgcagtca cgcaaccggt gctcgatacg ctgatcaagc acgttgccga tcgctcgttc
       61 aactgcatca ccattgacgg cgatacctcg acgaacgatt cgttcatcgt gattgcttcg
      121 ggcaagtcgt cgctgccgtt gatcacctcc acagactccg ccgcctatgt cgcgttgcgc
      181 gacgccgtga catcggtggc gcaggagctg gcgcaactga tcgtgcgcga cggcgagggc
      241 gcgaccaagt tcatgacggt gacggtagaa ggcggcacga gtgaagccga atgccgcctg
      301 atcgcgtatg cgatcggtca ttcgccgctc gtcaagactg ccttctacgc atccgatccg
      361 aacctgggcc ggattctcgc ggctatcggt tatgcgggcg tggcggatct cgatgtgaac
      421 aagatcgatc tgtacctcga cgatgtcctg gtcgcgaaga gcggtggccg caatccggag
      481 tatcgcgagg aagacgggca gcgcgtgatg aagaaaagcg agatcgcgat ccgcgtgctg
      541 ctgggccggg gtcaggccga agccaccatc tggacgtgcg atctctcgca cgattacgtc
      601 agcatcaacg ccgattaccg gtcttgaacc accactattt cccatggaca aactcgaaca
      661 atttctgacc cgcgccgagg ccgtcctggc gcgcgtagaa gggatgttgc cgccggctcc
      721 gccggaaatc gactggaaca gcgccgtggc atttcgctgg cgcaagcgtc aggggcgcgg
      781 tttcctgcag ccggtaccga acctgtcgcc gttgtcgctc gacgatcttt gcaatatcga
      841 gcgccagaag gggcttatcg agcagaacac gcggcagttc gtgcgcaagg cgccggcgaa
      901 caacgtgctg ctgacgggcg cgcgcggcac cggcaagtca tcgctgatca aggcatgcct
      961 gaacgcgtac cacacggaag ggctgcgtct gatcgaagtc gataaagacg atctccacga
     1021 tctcggcgat atcgttgacc tgatttccgc gcggccggaa cggttcatcg ttttctgcga
     1081 cgacctttcg ttcgaagacg gcgagtcagg ctacaaggcg ctgaaagtgg cgctggacgg
     1141 ctcgatctcc gctcaatcag acaacgtgct gatttacgcg acgtcaaatc ggcgccattt
     1201 gttgcctgaa tacatgagcg acaacgagac ctacaaacac acgtccgacg gcgaaattca
     1261 tcccggcgaa gtggttgaag agaagatttc gctgtccgag cgattcggcc tgtgggtaag
     1321 tttttacccg ttcaagcagg acgattacct gacgatcgtc ggacactggc tgaagcattt
     1381 cggttgcgag gcagaagaga ttgccggtgc tcgcggcgac gccctcgtgt gggcgctgga
     1441 acgcggttcg cgctcgggac gggtggcgtg gcaattcgcc cgcgactggt cgggccgcaa
     1501 ggcatgacgg cttctacttc cactacaacg agcgtttcaa acacagcgcc cgatgggcgc
     1561 cgagtgacgg acgtcgcggt cggtgtgctc gtgcaaccgg acggccgtta tctcctggct
     1621 cagcgcccgg aaggcaagcc gtatgaaggt tactgggaat ttcccggcgg taagctggaa
     1681 gcgggggaaa gcgtcgaagt ggcgctcacg c
//
LOCUS       DATGBK010001080         1908 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290935, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001080 DATGBK010000000
VERSION     DATGBK010001080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290935"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1148)
                     /gene="ssuD"
                     /locus_tag="VKJ77_15075"
     CDS             complement(<1..1148)
                     /gene="ssuD"
                     /locus_tag="VKJ77_15075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014722969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008726 - alkanesulfonate monooxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FMNH2-dependent alkanesulfonate monooxygenase"
                     /protein_id="HMC46640.1"
                     /translation="MNVFWFIPTHGDSRYLGTTQGARAADYDYFRQIAVAADTLGYEG
                     VLLPTGRSCEDAWVVASSLIPATKRLKFLVAIRPGLTSPALSARMASTFDRLSGGRLL
                     INVVTGGDPIELAGDGVFNDHNTRYEVTDEFLQIWRGLLESSHEGGSIDFDGKHLSSK
                     GGKVLYPPVQKAHPPLWFGGSSPAAHEIAADHIDTYLTWGEPPAEVEKKLADIRRRAA
                     DKGRKIKFGIRLHVIVRETEQEAWADADRLISKLDDETIQRAQASFAKMDSEGQRRMA
                     ALHGGQRDKLEVYPHLWAGVGLVRGGAGTALVGNPEQVAGLMKEYAALGIDTFILSGY
                     PHLEESYRFAELVFPLLPREQKERKSGPLSGPFGEIVGTSYLPRASQS"
     gene            complement(1372..>1908)
                     /locus_tag="VKJ77_15080"
     CDS             complement(1372..>1908)
                     /locus_tag="VKJ77_15080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46641.1"
                     /translation="LNKGSNVHYLLVEALKKAGLSYTDIQPVYLAPADARAAFVQGSV
                     DAWVIWDPYLAAVERQANARVIADGTGLVRNTQYYLATRKFATAQPQLVHALLEELDH
                     VDQWGRDNVPDAAKLLSPLVGLDQPTLERALKRTAYGVQPITPETLAYQQQIADTFTD
                     LKLIPKKLAVVDARWSVV"
BASE COUNT          382 a          590 c          558 g          378 t
ORIGIN      
        1 caactttgag acgcacgcgg cagatacgac gtgccgacga tttcaccaaa cggtcccgac
       61 aacggacccg acttgcgctc tttctgttca cgcggcagca gcggaaatac gagttcggca
      121 aaccgatacg actcttctag atgcggataa cccgacagga tgaaggtgtc gataccgagt
      181 gccgcgtact ccttcatcaa gcccgcgacc tgctccggat tgcccaccag cgccgtgcct
      241 gcaccgccgc gcacgaggcc tacaccggcc cacaaatgcg gatacacctc aagcttgtcg
      301 cgctgaccgc cgtgcaacgc cgccatgcgc cgctggcctt ccgaatccat ctttgcaaac
      361 gatgcctggg cacgctggat ggtttcatcg tcgagcttgc tgatgagcct gtccgcgtcg
      421 gcccacgctt cctgttccgt ctcgcgcacg atcacatgca ggcgaatgcc gaacttgatc
      481 ttgcggcctt tatcggctgc gcggcgacgg atatcggcga gcttcttttc gacttcagcg
      541 ggcggttcgc cccaggtcag ataagtatcg atatgatcgg ccgcaatctc gtgtgcagcc
      601 ggcgacgaac cgccgaacca cagcggcgga tgcgccttct gcacgggcgg ataaagcacc
      661 ttgccgccct tcgagctcag gtgcttgccg tcgaaatcga tcgagccgcc ttcatgcgat
      721 gactcgagca gaccgcgcca gatctgcagg aattcgtccg tgacttcata gcgggtattg
      781 tggtcattga acacaccgtc gccggccagt tcgatcgggt caccgcccgt caccacgttg
      841 atcagcagac ggccgccaga gaggcggtcg aaggtcgacg ccatacgtgc ggacaatgcg
      901 ggtgaggtca gacccgggcg gatcgcgacg agaaacttga gtcgtttcgt tgcgggaatc
      961 aggctggatg caaccaccca tgcgtcttcg caggaacgac ccgtcggcag cagcacgccc
     1021 tcgtagccaa gcgtgtcggc cgcgaccgcg atctggcgga agtagtcgta atccgcggcg
     1081 cgcgcgcctt gcgtcgtgcc gagataacgg ctgtcgccgt gggtcggaat gaaccagaaa
     1141 acattcatcg agggctcctg ccttgcggtg taagttcgag tgtcgagtag gaagcgagcg
     1201 cagacgcgac gaacaaaaat accgcccatg ttcatgcgaa acgagtcgcc cgtccccgtt
     1261 cagatgattc atcttagcga tgcccacttt gggcatgaac gatttattta agctaaggtt
     1321 ctcgccaatt ctgcttatgc gtctctagcg atgcaggagc gcaacatcgg actaaacgac
     1381 gctccagcgc gcatcgacca ccgcaagctt tttcggaatc agcttgaggt cggtgaaggt
     1441 atcggcaatc tgctgttgat acgcgagggt ctctggcgtg atcggctgca cgccataggc
     1501 ggtccgtttt aatgcgcgtt caagcgttgg ctgatccagc ccgactaacg gtgacagaag
     1561 cttcgcagca tccggcacgt tgtcgcggcc ccattgatcg acgtggtcca gttcctccag
     1621 caacgcgtgc acaagctgcg gttgggcggt cgcgaactta cgggtcgcaa ggtagtactg
     1681 cgtgttgcgc accagcccgg tgccgtccgc aatcacgcgt gcattcgcct gacgttcgac
     1741 ggccgcgagg tacgggtccc atatcaccca tgcgtcaacg ctgccctgca cgaacgccgc
     1801 gcgtgcatcg gcgggagcca gatagaccgg ctggatatct gtatacgaaa ggccggcttt
     1861 cttcagcgct tctaccagca agtagtggac attcgagccc ttgttcaa
//
LOCUS       DATGBK010001081         2319 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_221527, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001081 DATGBK010000000
VERSION     DATGBK010001081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221527"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VKJ77_15085"
     CDS             complement(<1..358)
                     /locus_tag="VKJ77_15085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46642.1"
                     /translation="MRLYFAPNSISGCVTTFSSIRTPFAPAVAPSLRTTAGRACKHSR
                     APALVTQDNSASHVKNTSRPELSSEVIVFSCKNLAGRTLGRMPSLVLQIARYFRRFSN
                     GSHKTYYLMLSVFFRIG"
     gene            complement(540..1235)
                     /locus_tag="VKJ77_15090"
     CDS             complement(540..1235)
                     /locus_tag="VKJ77_15090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019447807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HMC46643.1"
                     /translation="METKSNSSLAEKLRDGSLYERAPESLRVQVQARLKAETARKNPS
                     PWNWSWRMAGLPFIGGGIAGIGLCSLVFMTLLWTQQPPRGGDLQQEIVSSHVRALMSE
                     RTMDVLSSDQHTVKPWFNGRIDYAPPVVDPQAQGFPLVGGRLDYVDHRPVAVMIYRYL
                     KHPIDLYVFPEDHGKSDDKSAPSSTPLTTQSNDGYSLVEWHQDGMVYWAISDASPVYI
                     KRFAEAIRAGTRQ"
     gene            complement(1225..1833)
                     /locus_tag="VKJ77_15095"
     CDS             complement(1225..1833)
                     /locus_tag="VKJ77_15095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HMC46644.1"
                     /translation="MAKHSPNRFDAVMLPHLDAAYNLARWLSGSPADADDVVQEAFLR
                     AFRFFDGYEGDNPRAWLLAIVRNTWFTEWRRQHNRADATPYDDSLNVDDQLPGWADES
                     GEDPEKLAVRQDETELVHRALATLPVEYREVIVLRELEDMSYKDVAAVAGIPLGTVMS
                     RLSRARRLLCTAVRAAQGGSEQQAIRLVKTPPAGPEESKRGN"
     gene            1863..1994
                     /locus_tag="VKJ77_15100"
     CDS             1863..1994
                     /locus_tag="VKJ77_15100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46645.1"
                     /translation="MERAERAPRANAHDGPPVGVQYRDIALPHYKTPALNCTYSPAS"
     gene            2130..>2319
                     /locus_tag="VKJ77_15105"
     CDS             2130..>2319
                     /locus_tag="VKJ77_15105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46646.1"
                     /translation="MSDLDRKILVPEPLTEHGARRRTALTCMAWAGAGMLWTMNGGVP
                     GSKLIGGTAEAAEVNRHAF"
BASE COUNT          488 a          707 c          677 g          447 t
ORIGIN      
        1 gcccaattcg aaagaaaaca gacagcatta agtaatatgt tttatgtgaa ccattcgaaa
       61 atcgtcggaa atagcgggcg atctgtaaaa ccaatgaagg cattcgcccg agtgtccttc
      121 cggcaaggtt cttacagctg aaaacgatca cttcgctcga taattccgga cgcgaggtgt
      181 tttttacatg agacgccgaa ttgtcttgag tcacaagagc aggcgctcgc gaatgtttgc
      241 acgcgcgacc agcagttgtt cggagcgaag gcgcaacggc cggtgcgaac ggcgttcgaa
      301 tcgacgagaa cgtggtgacg cagccactga tgctgttggg ggcgaaatag agccgcaagg
      361 caatatagcg cctatgaaga acggtagccg gccgtgggac gccaccaagg aagcggcgag
      421 gccggataaa tgcgtgagcg cagcggtggt ccgggccgcg ccatcatgcg gaccatcacg
      481 ccgggccgcc cgcgaacaag tgaaccgcga accgcaggcg ttaagccacg cgttcccgct
      541 tattgccgcg ttcccgctct gatcgcttcg gcgaaccgct tgatgtagac cggcgacgca
      601 tcgctgattg cccaatacac catgccgtcc tgatgccact cgaccagcga ataaccatca
      661 ttggattgcg tggtcagagg cgtcgacgac ggcgcgcttt tgtcatcgct tttgccgtga
      721 tcttcaggaa agacatacaa gtcgatcgga tgcttcagat accggtagat catgacggca
      781 acaggacgat ggtccacata atcgagccgc ccgccgacca gcggaaagcc ttgagcctgg
      841 ggatcgacca cgggcggcgc atagtcaatg cgtccgttga accagggctt gaccgtgtgc
      901 tggtcgctcg acaggacatc catcgtgcgc tccgacatca gcgcccgtac atggcttgaa
      961 acaatctctt gctgcaggtc cccgccacgg ggtggctgct gtgtccagag cagcgtcatg
     1021 aagaccagcg agcacaagcc gatccccgcg attcctccgc cgatgaacgg cagccccgcc
     1081 atgcgccacg accagttcca gggcgacgga tttttcctgg ccgtttctgc ttttaaccgg
     1141 gcttgcacct gcacacgcaa ggattccggc gcccgttcgt aaagcgagcc gtcgcgcagt
     1201 ttctcagcga gtgatgagtt ggatttagtt tccacgcttg gactcctccg gaccggcggg
     1261 tggtgttttg accaggcgga tcgcctgctg ttccgacccg ccctgcgcgg cccgtacagc
     1321 ggtgcacaac aggcggcgcg cgcgcgaaag ccgtgacatg actgtgccca gcgggatgcc
     1381 cgccacggcc gctacgtcct tgtagctcat gtcttccagt tcacgcaaca cgatcacctc
     1441 acgatattca accggcaacg tagccaatgc ccgatgcacg agttcggtct cgtcttggcg
     1501 caccgccagc ttctctggat cttcaccgct ttcatcggcc cagccgggaa gctgatcgtc
     1561 gacattgagc gagtcgtcgt agggcgtggc atccgcgcgg ttatgttgcc tgcgccattc
     1621 ggtgaaccac gtgttgcgca cgatcgccag cagccaggcg cgcggattgt cgccctcata
     1681 gccatcgaag aaacgaaagg ctctcaggaa ggcttcctgc acgacgtcgt cggcgtccgc
     1741 gggactgccg ctcaaccagc gcgcaaggtt atacgccgcg tcaagatgcg gcagcatcac
     1801 cgcgtcgaag cgattcggcg agtgcttcgc cattggtact ctccctggca accggtgttg
     1861 ccgtggaacg tgctgaacgt gcgccacgcg ccaacgcgca tgacggaccg ccggtgggtg
     1921 tgcaataccg cgatattgca ctaccgcact acaagacgcc ggctctcaac tgtacttact
     1981 cgccggcttc ctgatttatt cccgattatg cgaggttatc gaaaaaattt aacggggata
     2041 aagccatggg cctctgagtt tggtgggcat ggggaaatgc ttccccacct tgcatcgctg
     2101 ttttgcatac ccacccacag gagccgatca tgtcagacct cgaccgaaaa atcctagtac
     2161 cagaacccct cacggaacac ggcgccagac gccgcacagc actgacgtgc atggcatggg
     2221 ccggcgccgg catgctgtgg acaatgaatg gcggcgtgcc tggctccaag ctgatcggcg
     2281 gcaccgcgga ggcagccgaa gtcaaccgtc atgcgttca
//
LOCUS       DATGBK010001082         1658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_244332, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001082 DATGBK010000000
VERSION     DATGBK010001082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244332"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..600)
                     /locus_tag="VKJ77_15110"
     CDS             complement(139..600)
                     /locus_tag="VKJ77_15110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012406371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC46647.1"
                     /translation="MSITLNINGTRRDFDGDPDTPLLWVIREALGLTGTKYGCGIAQC
                     GACTVHVDGQTLRSCSAPVSAVAGRTVTTIEGLSSRAAKAVQKAWVDLDVVQCGYCQS
                     GQIMSATALLEGKPKPSDTDIDRAMAGNICRCATYQRIRAAIHAASSQLTG"
     gene            complement(645..1241)
                     /locus_tag="VKJ77_15115"
     CDS             complement(645..1241)
                     /locus_tag="VKJ77_15115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014428525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Isoquinoline 1-oxidoreductase subunit"
                     /protein_id="HMC46648.1"
                     /translation="MPSSMKARLIVIVLAGMFGSLAGAEGLRGPESFSSIANPTERSR
                     ALFVEAGRVLQHPRCLNCHPVGERPAQGNDGHPHSPLVVRGSDDMGAIAMRCTTCHQD
                     ANYEQSGVPGHPLWRVAPKSMAWQTKSLGQICAQIKDPKRNGGKTLSAIQEHMAHDSL
                     VGWAWRPGGNREPAPGTQAQLGALIAAWIESGAACPAS"
BASE COUNT          321 a          520 c          515 g          302 t
ORIGIN      
        1 cggccgcgcc ggcgctttgc aggaacacgc ggcgtgatag cgatggcgcg aaagactcct
       61 cgacgccgag gagctgcatg agccggcgct gttcgtcgtt gttgaagcga ttcatcaacg
      121 gatgcatggt gtgccccttc agcccgtgag ctgcgacgac gcggcgtgga tcgctgcgcg
      181 gatgcgctgg taggtcgcgc aacggcagat gttgcctgcc atcgcgcggt cgatgtcggt
      241 gtcgctcggc ttgggcttcc cctccagcag cgcggtcgcc gacatgatct gccccgactg
      301 gcaataaccg cactgcacga cgtcgaggtc tacccacgcc ttttgtaccg ccttcgcagc
      361 tcgcgatgaa aggccttcga tcgttgtcac cgtacgaccg gcgaccgccg agacaggggc
      421 ggaacaggaa cgcaacgtct gtccgtccac atggacggtg cacgcgccgc attgcgcgat
      481 accgcatccg tacttggtgc cagtgaggcc gagcgcctcg cggatgaccc acaacagcgg
      541 agtatccgga tcgccgtcaa aatcgcgccg cgtgccgttg atgttgagcg tgatagacat
      601 atgaagctcc tatgcaggga aggacgccga gcggggctcg gtcgtcagga tgcggggcaa
      661 gcggcgccgg actcgatcca cgctgcgatc aaagccccta gctgggcttg cgtgccgggc
      721 gcgggttcgc ggtttccacc tggtctccat gcccagccca ccagtgagtc gtgcgccata
      781 tgctcctgga tggctgaaag cgtcttgccg ccattgcgct tcgggtcctt gatctgtgcg
      841 cagatctgac ccagcgattt ggtctgccat gccatcgact tcggtgcgac acgccacaga
      901 ggatggcctg gaacgcccga ctgctcgtag tttgcatcct ggtggcaggt cgtgcagcgc
      961 atcgcgatcg cccccatgtc gtcggagccg cggaccacca gcggagagtg cggatggccg
     1021 tcattgccct gagccggtcg ctcaccgacc ggatggcaat tcaggcaacg cggatgctgc
     1081 aggactcgac ccgcctcgac gaacagcgcg cgtgaacgtt cggtcgggtt cgctatcgac
     1141 gagaatgact caggccctcg cagaccctcg gcaccggcaa gcgacccgaa catacctgcg
     1201 agaactataa ctatcagccg cgctttcatc gatgagggca ttggaggcgc tccgtaatca
     1261 agtaaggcga gtcaacgcaa tcataccgaa ccattatacg acggccttca tcaatatttg
     1321 gttgcgtcgt tcgtgtaggg caatgtcgag ccaacggcag caaagagcga cagccgctcc
     1381 cggccagaag cggaaccagg gtctgattac ctcgaccgtc cgctcgtcgg ccacagccga
     1441 ccttcgccga gatcggcgca aaataggcga atgactgcaa tgcggcaatc ggctgagctc
     1501 acactttcgg ccaaatgcgg aagctggaca actggctcaa gatctgccgg tcaccgtagc
     1561 taactgcgca actttgccga gtgatgcacc ccgcatacgc gaagtccgca aggccttgcg
     1621 ctgatcatcg gtcaaagcgt ttgcgggcaa gcgactag
//
LOCUS       DATGBK010001083         3347 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_59508, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001083 DATGBK010000000
VERSION     DATGBK010001083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3347
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59508"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..674)
                     /locus_tag="VKJ77_15120"
     CDS             complement(9..674)
                     /locus_tag="VKJ77_15120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HMC46649.1"
                     /translation="MTPPLTPVITVFERSPDRGRGLARDMRVRWALEEVAQPYEVRLV
                     SFEAMKEPAHRALHPFGQIPTYEEGALVLFESGAIVFHIAERHAGLLPDDSNARARAI
                     TWIFAALNTVEPPILDLQTTRFLEGDKTWFEQRLPIVQDRIRDRLGELSDRLGNADWL
                     DGAFSAGDLMMVAVLLRLKASGLLDDYPNLSAYVARGAARPAYKRAFDAQLALFTGKP
                     PIG"
     gene            1179..3347
                     /locus_tag="VKJ77_15125"
                     /pseudo
     CDS             1179..3347
                     /locus_tag="VKJ77_15125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436305.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glucosidase"
BASE COUNT          691 a          966 c         1034 g          656 t
ORIGIN      
        1 gaccctcatc agccgatcgg tggcttgcca gtgaaaagcg ccaattgagc gtcgaaagca
       61 cgcttgtagg cgggccgcgc tgcgccgcgg gcgacatagg cggacaggtt cggatagtcg
      121 tccagcagac ccgatgcttt caacctgagt agcacggcca ccatcatcag gtcgcccgcg
      181 ctgaacgcac catcgagcca gtcggcgttg ccaaggcgat cggaaagctc gcccagccgg
      241 tcacggatgc gatcttggac gattggcagg cgctgctcga accaggtctt gtcgccctca
      301 aggaacctgg tggtttggag atcgaggatc ggcggctcaa ccgtgttgag cgcggcaaag
      361 atccatgtga tcgcgcgtgc ccgggcattc gaatcgtcag gaagcaggcc tgcatggcgc
      421 tctgcgatat ggaacacgat cgcccccgac tcgaacagga caagagcgcc ttcttcatag
      481 gtcggaatct gcccaaaagg atgaagcgct cgatgcgcgg gttccttcat tgcctcgaac
      541 gaaacaagac gaacctcgta cggttgggcc acttcttcaa gcgcccagcg aacacgcatg
      601 tcacgcgcca gtcccctgcc gcgatcgggc gaccgttcaa agacggtgat aacgggggtt
      661 agtggagggg tcatgctgat ttctcctttg ctggatgtct cgttgagtgc cggatacgcg
      721 atcccggcgt tcacctgcta gacgttcggg atagggccaa gtcgacattc ctgaatcaat
      781 tttttctcaa agattaggca aatcggtgtc ccgaacaaaa taattcaagc aaaagatcgg
      841 ccccaactcg aactagacta cccaattgtg caacacgggg ccggtccaca ggtcgcacgt
      901 tgcggcgcga tggcgcttat cattaacgta gcgtccgtct ggccacggtt gctgaggccg
      961 ttcgtcgaag tcgggttgtg cgcgtggcgc gaagcgagcg tttctacagc aagcgccgcg
     1021 tggaacccca tttcaggggt aatcgcttgg taaactgttg cgcattgaga ggatgttgag
     1081 cacctgacgt gcgtagcgcg cacggcgctc ctgaaggaaa aggacagacg ttcatgcact
     1141 gaacgtattg gatggtcgat atcgggtcgg gaggtttcat gccaccgcta cgcgcaatca
     1201 atcttctcca gtcgaaggaa ggtgcccgtc tccatggtcc ggaactcgac cgctggcgcc
     1261 gctggggacc ttatctgagc gagcggcaat ggggtactgt tcgcgaagac tacagcgaat
     1321 acggcaccgc atgggactac tttccgcacg atcatgcgcg cagccgcatg taccgctggg
     1381 gcgaggatgg cattgccgga ttcggcaacg acccgctcga ctggtgcgtc tcgcttgcac
     1441 tctggaacgg gcacgatccg atcattaagg aacggctctt cgggttgacg aatgagcaag
     1501 gcaatcacgg cgaggacgta aaggagcttt acttctatct tgacggcacg ccgacgcatt
     1561 cgtacatgaa gatgctgtac aagtatcctc acgacgcgta cccgtaccag gatctgatcg
     1621 acgaaaacct gcggcgcggc gccggacagc ccgaatatga aatccttgac acgggtgtgt
     1681 tcgacgataa ccgctacttc gacgtctgcg tcgaatatgc gaagcacaca cccgaagaca
     1741 tcgtgatgcg cgttagcgta gaaaaccgcg cggatcagag cgcgacgctt catgtgttgc
     1801 cgcaattctg ggcgcgcaac agatgagcgt ggtcgggcaa acccagcaag ccgtcgctca
     1861 aactggagcc gaatgcagag gagggcgcac gcgtcgtcgc gcacaatcct gcgctcggaa
     1921 cgatgatcgt gacggcgtcg gcgcaacagc cgatcgagtg gctcttctgc gaaaacgaaa
     1981 ccaattggcg ccgcattttc ggcttcgaag gagcggggcc ggggccattc aaggacggct
     2041 tccacgacta cctcatcgac ggcgatgagc aggcgatccg gcgcgacagg ggcacccgcg
     2101 ccgctgcgca tgtggtcctg gagttcgcgc ctcatgagcg ctcggtgctg tatctgcgct
     2161 ggcgtccaga atcgtcttcg gctacagatg ccgtgtcgct cgacatggaa gcgctcttcg
     2221 cgcgccggca agcggaggcc gacgaattct atgcggcgct tcagcacgac atcgtcgacg
     2281 ccgatgcgcg gctcgtccag cgtcaagcgc tcgccggcat gctgtggtcg aagcagtact
     2341 accaatttga tgtgacgcgc tggcacgatg gcgaccccgg ccagccgaag ccaccgagag
     2401 cacgcaggcg cggccgcaac gcggactggc ggcacatgtg caatggcgac attgtgtcga
     2461 tgccagacaa gtgggagtac ccctggtatg catcgtggga cctcgcattt catgctgtcg
     2521 cgttcgccat gatcgatccc gacttcgcga agaagcaatt gttgctgctc gtgaaggagc
     2581 gctacatgca tccgaacggg caattgcccg cctatgagtg ggcgttcagc gacgccaatc
     2641 cgccggttca tgcgtgggca acatggcgtg tctacgaact cgaccgcgag gtgacgggcg
     2701 ttggcgatca cgcgtttctc gaagtcatgt tccacaagct gctgcttaat ttctcgtggt
     2761 gggtcaaccg caaggacgcc gatgaccgca acatctttca gggtggtttt cttggcctcg
     2821 acaacgtggg catcttcgac cggtcttcgc cactaccgac cggcggccgt attgatcagg
     2881 ccgatggcac agcatggatg gcctcctacg cgctcgacct gatgcagatc ggcctcgaac
     2941 tggcgatgac gaacaacgcg tacgtcgaaa tcgcggtgaa gttcttcgag cactttctgt
     3001 atatcgcgga agcggtcagt tgcagcgaag gctgcagcac agggttatgg gacgaagacg
     3061 gcgaattctt ctacgacgta ctgcaccttc cggacggtac ccgtgtgcct atgcgcattc
     3121 gttcgatcgt cgggctgatt ccgcttttcg ccgttcacgt actcgaggag cgggtgcacg
     3181 gccatctgcc gggattgcgc gaacggctgg cgtggtttct tgatcatcgg ccgaatctgg
     3241 caaagctggt gtcgcgctgg actgaacccg gcaaaggtaa caccacgctg ctgtcgttgt
     3301 tgcgcggaca ccggatgaaa gcgctgctgc ggcgcgcgct cgatgaa
//
LOCUS       DATGBK010001084         1597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_290986, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001084 DATGBK010000000
VERSION     DATGBK010001084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290986"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1597)
                     /gene="alaS"
                     /locus_tag="VKJ77_15130"
     CDS             complement(<1..>1597)
                     /gene="alaS"
                     /locus_tag="VKJ77_15130"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HMC46650.1"
                     /translation="IAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHGDKIWGG
                     PPGSAEQDGDRFIEIWNLVFMQFNRDVQGNMTKLPKQSVDTGMGLERLAAVLQHVHSN
                     YEIDLFQTLIKAAARETNTPDLTNNSLKVIADHIRACSFLIVDGVIPGNEGRGYVLRR
                     IVRRAIRHGYKLGRKGAFFHKLVADLVEEMGTAYPELKDAQTRVTDVLRQEEERFFET
                     IEHGMSMLETELATLDAKGSKQLDGELAFKLHDTFGFPLDLTADVCRERGITVDEAAF
                     DEAMARQREQARSAGKFKSAQGLDYAGAKTTFHGYENEIFDDAKVVAVYVDGVSVKEA
                     QVGQQAVVVLDHTPFYAESGGQAGDQGVLANAAVRFAVADTLKVQSDVVGHHGTVEQG
                     TLKVGDVVKAEIDTVRRVRTARNHSATHLMHKALREVLGAHVQQKGSLVDPDKTRFDF
                     AHNAPMTDEQIRRVEEIVNAEVLANAPGIVRVMAYDEAVKGGAMALFGEKYGDEVRVL
                     DLGFSRELCGGTHVHRTGDIGLF"
BASE COUNT          274 a          500 c          489 g          334 t
ORIGIN      
        1 ttgaacaagc cgatgtcgcc cgtacgatgc acgtgcgtgc caccgcaaag ttcgcgcgag
       61 aaaccgaggt cgagcacgcg cacttcgtcg ccgtattttt cgccgaacag cgccatcgca
      121 ccgcccttca ccgcttcgtc gtatgccatc acacgaacga tgcctggcgc gtttgccagc
      181 acttccgcgt tgacgatttc ttccacgcga cgaatctgct cgtcggtcat gggcgcgttg
      241 tgcgcgaagt caaagcgcgt cttgtccgga tcgacgagcg aacccttttg ctgcacgtga
      301 gcgccgagta cttcgcgcag cgccttgtgc atcaagtgcg tggccgagtg attgcgggcg
      361 gtgcgaacac ggcgaaccgt atcgatttcc gccttcacca catcgcccac tttcagcgtg
      421 ccctgctcga cagtgccgtg atgtccaacg acatcggact gaaccttgag ggtatcggcg
      481 actgcgaagc gcaccgctgc gttcgcgagc acgccctgat cgcccgcctg accgcccgat
      541 tcagcgtaga acggcgtgtg atcgagcacg acgacggcct gctggccgac ctgcgcctct
      601 ttcaccgata caccgtccac gtacaccgcg accactttgg cgtcgtcgaa gatttcgttt
      661 tcgtagccgt ggaacgtggt cttggcgccc gcgtagtcca agccttgcgc cgacttgaac
      721 ttgccggccg agcgcgcctg ttcacgctga cgtgccatgg cttcgtcgaa ggcggcttca
      781 tcgaccgtga tgccgcgctc gcggcaaaca tcggcggtca ggtccagcgg gaagccgaac
      841 gtgtcgtgga gtttgaacgc gagttcgccg tctagttgct tcgagccctt ggcgtcgagc
      901 gtggcgagtt cggtttcgag catcgacatg ccgtgttcga tcgtctcgaa gaaacgttct
      961 tcttcctgcc gcagaacatc cgtcacgcgg gtttgcgcgt ccttgagttc cgggtaggcc
     1021 gtgcccattt cctcgaccag atctgcaacg agcttatgga aaaacgcgcc cttgcggccg
     1081 agcttgtagc cgtggcggat ggcgcggcgc acgatccggc gcagcacata accgcggcct
     1141 tcgttgccgg gaatgacgcc gtcgacgatc aggaacgagc acgcgcgaat atggtccgcg
     1201 atcaccttca gcgagttgtt ggtgaggtcc ggcgtgtttg tttcgcgggc ggcggccttg
     1261 atcagcgtct ggaacagatc gatctcgtag ttgctgtgca catgctggag cacggcggcg
     1321 aggcgttcga ggcccatgcc agtgtccacg ctctgcttgg gcagcttcgt catgttgccc
     1381 tggacgtcgc gattgaactg catgaacacg agattccaga tctcgatgaa gcggtcgcca
     1441 tcctgctcgg ccgagcccgg agggccgccc cagatcttgt cgccgtggtc gtagaagatt
     1501 tccgaacagg gaccgcaagg tccggtgtcg cccatctgcc agaaattgtc ggagccggcg
     1561 atccggatga tcctggactc agggagtcct gcgatct
//
LOCUS       DATGBK010001085         1564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313800, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001085 DATGBK010000000
VERSION     DATGBK010001085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313800"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..447
                     /locus_tag="VKJ77_15135"
     CDS             <1..447
                     /locus_tag="VKJ77_15135"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003274158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HMC46651.1"
                     /translation="RDLKVFAELGHLAIGLEGAASFAEMARAYSGCVVWQQDFLKLDL
                     PESRFDGVFANAALFHVPSQELPRVLLELHATLKPRGVMFTSNPHGHNEEGWNRGRYG
                     AYHDLEAWRRYMSAAGFVELAHYYRPAGVPREQQPWLASVWRSSAS"
     gene            complement(478..>1564)
                     /locus_tag="VKJ77_15140"
     CDS             complement(478..>1564)
                     /locus_tag="VKJ77_15140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017877879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl hydrolase family 65 protein"
                     /protein_id="HMC46652.1"
                     /translation="YDLPGRSQESATLYQHGVRAILRGLRFGERGLPLMGTGDWNDGM
                     NLVGAQGKGESVWLGFFLYEVLMRFTELARMHSDTALAERCQREAAQLRQNIERNGWD
                     GEWYRRAYFDDGTPLGSASNAECQIDAIAQSWAVLSGAGDPWRSRTAMAAVDRRLVRR
                     DHALIQLLDPPFDKSTLNPGYIKGYVPGVRENGGQYTHGAIWTVMAFAALGDSRRAWE
                     LFDMINPVNHASSEAAIATYKVEPYVVAADVYAVSPHTGRGGWTWYTGSAGWMYRLIV
                     ESLLGLKLEVDKLRFAPCLPAEWETFKLHYRYRETVYHIVVVQTHAPDNKTSVTVDGV
                     EQSDEAIPLADDRLEHAVEIRIQRVQS"
BASE COUNT          280 a          499 c          466 g          319 t
ORIGIN      
        1 cgcgacctca aggtatttgc cgaactcggt catctcgcga tcggtttgga gggcgccgct
       61 agtttcgccg agatggcgcg cgcctacagc ggctgcgtgg tgtggcagca ggatttcctc
      121 aagctcgatt tgcctgagag ccgtttcgat ggcgtgttcg ccaatgccgc gctgtttcat
      181 gtgcccagcc aggagttgcc acgcgtgttg ctggaattgc acgcgacact gaaaccgcgt
      241 ggtgtgatgt tcacctcgaa cccgcacggc cacaatgagg aaggctggaa ccgcggacgc
      301 tacggcgcgt accacgatct cgaggcgtgg cggcgctata tgtctgccgc cgggttcgtg
      361 gagctagctc actattaccg ccctgcaggc gtgccgcgag aacagcagcc ctggttggcc
      421 agtgtctggc gcagctcggc atcctgatac catcgtttct cgccgcgcga gcatgcttca
      481 gctttgaacc cgctgaattc ttatctcgac cgcatgttcc aggcgatcgt cagccagagg
      541 aatggcctca tcgctctgct cgacgccgtc aaccgttaca ctggtcttgt tgtccggggc
      601 gtgtgtttga acaacgacga tgtggtagac cgtttcccgg tagcggtaat gcagcttgaa
      661 cgtttcccac tctgccggca gacatggcgc aaagcgcagt ttgtcgactt ccagcttcaa
      721 ccccagcaac gattccacga taagccgata catccagccg gcggatcctg tgtaccaggt
      781 ccagccgccg cggccggtgt gcggcgaaac cgcatagacg tcggcagcga ccacgtaagg
      841 ttccactttg taggtggcaa tcgccgcctc ggaactcgca tggtttaccg ggttgatcat
      901 gtcgaatagt tcccacgcgc gccggctgtc gcccaaggca gcgaacgcca tcaccgtcca
      961 gattgccccg tgcgtgtatt ggccgccgtt ttcgcgcacg cccggcacgt agccctttat
     1021 atagccaggg ttcaaagtcg acttgtcgaa cggtggatcc aggagctgga tcagcgcgtg
     1081 gtcacggcgc accaggcgcc gatccaccgc tgccatcgcc gtgcgcgagc gccagggatc
     1141 tcccgcgccc gagagcacgg cccagctttg tgcaattgca tcgatctggc attcggcgtt
     1201 gctcgccgat cccagcggcg tgccgtcatc gaagtaggcg cgacggtacc actcgccatc
     1261 ccagccgttg cgctcgatat tctggcgcaa ttgtgcggcc tctcgctgac agcgctcagc
     1321 gagggccgtg tcgctgtgca tgcgcgcaag ctcggtgaat cgcatcagca cctcatacag
     1381 gaaaaaaccc aaccacacgc tttcgccttt gccctgggcg ccaacgaggt tcatgccgtc
     1441 gttccagtcg ccggtgccca tgagcggcag gccgcgctcg ccaaagcgca gacctctcag
     1501 gatggcacgc actccgtgtt gatataaagt ggccgactct tgcgagcggc ctggcaagtc
     1561 gtaa
//
LOCUS       DATGBK010001086         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_313808, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001086 DATGBK010000000
VERSION     DATGBK010001086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313808"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..960
                     /gene="dnaN"
                     /locus_tag="VKJ77_15145"
     CDS             <1..960
                     /gene="dnaN"
                     /locus_tag="VKJ77_15145"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HMC46653.1"
                     /translation="EHAFPAEVAESGAVTVPAKLFSGYLGNLPAGLLELTGSPTRASV
                     KAEKSNYDFHALPPDEYPPLPAAQKGASFAISAKLFREGVQSTIFAASSEEARGAVLM
                     GTLLEIEGTSITMVATDGYRMAKWTSTLERGLAEGSAKYIVPSRALAEAARNIGASET
                     LEITALGAQANQLSITAGTTSIVVRLVDGQYPDYPKVIPPRFDRSVTVNTSALIGGLR
                     RAELVAGDRASMVKIAVANQQLIITANSDIAGNAYEELEVEQTGDDLTIAFNARYMVE
                     ILNHLDSPQVVLEFLGPLSPGAIRPLEASPGGQQLFILMPLRQ"
     gene            968..1210
                     /locus_tag="VKJ77_15150"
     CDS             968..1210
                     /locus_tag="VKJ77_15150"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC46654.1"
                     /translation="MLLEHVRLANFRNYASLDVGPAPGLNVFVGPNAQGKSNLLEAIA
                     MLATGKSFRAHRESELIREGHERAEIEGRPQCARRL"
     gene            1192..2022
                     /gene="recF"
                     /locus_tag="VKJ77_15155"
     CDS             1192..2022
                     /gene="recF"
                     /locus_tag="VKJ77_15155"
                     /inference="COORDINATES: protein motif:HMM:TIGR00611.1"
                     /note="All proteins in this family for which functions are
                     known are DNA-binding proteins that assist the
                     filamentation of RecA onto DNA for the initiation of
                     recombination or recombinational repair; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication and repair protein RecF"
                     /protein_id="HMC46655.1"
                     /translation="MRATIVKTGQGTRKSFDVNGAAVGFARFLGKARVVTFVPADLQL
                     VAGGPALRRTFLNGALAQSSTVYYRELARYQKVIAQKAALLRGVIAPDRDLLLTYNEE
                     LAPAGMAIMEARAAFITDLARATESIYARWRGTREALTVRYAPSTGDVPLADALAANI
                     ETELRRRQTTVGPHRDDVRLEIDGRALAAFGSQGQQRTAVLALKVAEYEVMRERAGDA
                     PILLLDDVLSELDAERAGGFLAALGAFEQAFLTTTELPGSLGTAVTAYAINNATVVPF
                     "
     gene            2024..>2611
                     /locus_tag="VKJ77_15160"
     CDS             2024..>2611
                     /locus_tag="VKJ77_15160"
                     /inference="COORDINATES: protein motif:HMM:NF017103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HMC46656.1"
                     /translation="MLTKLGEAVGGWKPHATPGGDPLSAIRAAWTSLVGAEVARATQP
                     VAIQNDALVVLTASGAWSHQLAFLEPDIVRGIVAMPEGRGIARLRFRVGAIRSNVRGA
                     QPAGKRSPRRAAQAPASTAPATTIAEAIAAFRATVARANAAHHAAGGTFCGDCGAALE
                     TGTRCVPCLQTTLRERDERCERLLYEAPWLQPEDVL"
BASE COUNT          490 a          824 c          836 g          461 t
ORIGIN      
        1 gaacacgcgt ttccggccga agtcgctgaa agcggcgcgg taacggtacc ggcgaaactc
       61 ttctcgggtt atttgggcaa tctgccggcc ggtttactcg aactgaccgg ctctccgacc
      121 cgcgcgtcgg taaaggcgga aaagtcgaac tacgattttc acgcgctccc gcccgacgaa
      181 tatccgccgc tgcccgccgc ccagaagggc gcatcgttcg ccatcagcgc gaagctgttt
      241 cgcgaaggcg tgcaatccac gattttcgcc gcctcgagcg aggaggcgcg gggcgccgta
      301 ctgatgggca cgttgctgga aatcgaaggc acgagcatca cgatggtcgc gaccgacgga
      361 tatcgcatgg cgaagtggac atcgaccctc gagcgcggac ttgccgaagg gtcggcaaaa
      421 tatatcgtcc cctcgcgagc gcttgcggaa gccgcgcgca acatcggtgc gagcgaaacg
      481 ctcgagatca ccgcgctcgg cgcgcaagcg aaccagctgt cgattacggc cgggacaacg
      541 tcgattgtcg tgcgcctggt ggacggtcag tatccggact atccaaaagt cattccgccg
      601 cgcttcgacc gcagcgttac ggtcaatacg agcgcgctta tcggcgggtt gcgccgcgca
      661 gaactcgtcg ccggtgaccg cgcgtcgatg gtaaagatcg ccgttgcgaa ccagcagttg
      721 atcatcaccg ccaactccga tattgccggc aacgcgtacg aagagcttga agtcgaacag
      781 accggcgacg atctcacgat cgcgtttaac gcgcgctaca tggtcgagat tctcaaccat
      841 ctcgattcac cgcaagtggt gctggaattt ctcgggccgc tatcgcccgg tgcgatccgg
      901 ccgctcgaag caagtccggg cgggcagcag ctctttattt taatgccgct gcggcaatag
      961 cgacgccgtg cttttagagc acgtccggct tgccaacttt cggaattacg cgagcctcga
     1021 cgtcggaccg gcgccggggc tcaacgtttt tgtcggcccc aacgcgcaag gcaagtccaa
     1081 tttgctcgaa gcgatcgcaa tgctcgcaac cggcaaatcg tttcgcgcgc accgcgagtc
     1141 cgaactcatc cgcgaaggcc acgagcgcgc cgaaattgaa ggccggccgc aatgcgcgcg
     1201 acgattgtaa aaacggggca gggtacgcga aagtcgtttg acgtgaacgg tgcggcggtc
     1261 ggattcgcgc ggtttctcgg caaggcgcgc gtcgtcacct tcgtgcccgc cgatctgcaa
     1321 ttggttgccg gcggccccgc tctgcgccgg acgtttctca acggcgcgct cgcgcaatcg
     1381 tcaaccgtgt attatcgcga gctggcgcgc tatcaaaaag tgatcgcgca aaaggcggcg
     1441 ctcttgcgcg gcgtcatcgc ccccgatcgc gatctgctgt taacctacaa cgaagaactc
     1501 gccccggcgg gaatggcgat catggaagcg cgcgctgcct tcatcaccga tctcgcgcgc
     1561 gcgacggaat ccatttacgc gcggtggcgc gggacgcgcg aagcactcac cgtgcgttac
     1621 gcgccgagca ccggcgacgt gccgctggcc gatgcgctgg cagcgaatat tgaaacagaa
     1681 ctgcgccgcc gtcaaacaac cgtggggcca caccgggatg atgtgcgctt ggaaatcgac
     1741 ggtcgggccc tggcggcgtt cggctcgcag ggacagcagc gaacggcggt acttgcgctc
     1801 aaggttgccg aatacgaagt gatgcgcgaa cgcgccggtg atgccccgat cctcttgctc
     1861 gatgacgtgc tgtcggaact cgatgccgaa cgcgccggcg gttttcttgc tgcgttgggc
     1921 gcattcgaac aggcgttttt aacaacgacc gaattgcccg gatcgctggg caccgccgtc
     1981 actgcgtacg ccatcaataa tgccaccgtg gtgccgttct agcatgctga cgaagcttgg
     2041 cgaagccgtc ggcggctgga agccgcacgc aacgccgggc ggcgatccgc tcagcgcaat
     2101 tcgtgcagcg tggacgagtc tggtcggcgc cgaagtggcg cgcgcgacgc agccggttgc
     2161 gattcaaaac gatgcgctcg tcgtcttgac ggcgtcgggt gcatggagcc atcaactcgc
     2221 atttctcgaa cccgatatcg tgcgcgggat tgtcgcaatg cccgagggcc gcggcatcgc
     2281 ccggctgcgt tttcgcgtcg gcgcgattcg ttccaatgtg cgcggcgcgc agccggccgg
     2341 caaacgaagt ccgcgtcgcg ctgcgcaggc acccgcgagc accgcaccgg cgacaacgat
     2401 tgccgaagcg atcgcggcat ttcgtgcgac ggtcgcgcgt gcaaacgccg cgcatcacgc
     2461 tgccgggggc acgttctgcg gcgattgtgg cgctgcgctt gaaaccggaa cgcgctgcgt
     2521 tccgtgtttg caaacgacac tgcgcgaacg cgacgaacgg tgcgagcgcc tgctgtacga
     2581 agcgccgtgg ctgcagcccg aagacgtctt g
//
LOCUS       DATGBK010001087         1790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_174722, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001087 DATGBK010000000
VERSION     DATGBK010001087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174722"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /gene="fabZ"
                     /locus_tag="VKJ77_15165"
     CDS             complement(<1..358)
                     /gene="fabZ"
                     /locus_tag="VKJ77_15165"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013522560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HMC46657.1"
                     /translation="MAILDIREIMRILPHRYPMLLIDRILELEPMKFARGIKNVTANE
                     PMFTGHFPGNPVLPGVYMIEALAQLGGTVILEPGDIARKVPYLAGIDKAKFRRPVVPG
                     DQLMMEAYVIKTKMNIG"
     gene            complement(358..1182)
                     /gene="lpxC"
                     /locus_tag="VKJ77_15170"
     CDS             complement(358..1182)
                     /gene="lpxC"
                     /locus_tag="VKJ77_15170"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:TIGR00325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HMC46658.1"
                     /translation="MRDAIEFAGAGLHTAAPACVRILPAAADTGLRFRLNDAVEFPAR
                     ADYVVDTRRATVLGCGEHTVSTVEHLLSALLGMGIDNALIAVDGPEVPVMDGSAKVFA
                     DAIVATGTVVQKEARRRFICTEPQLFRDGDKTLIVAPSSTFRVRMTIDFEAPIGTQYL
                     DLEITPETFVREIAFGRTFGFLHEVESLLRRGLAQGGTIDNAVVYGPDGPIAPERAAH
                     EPVRHKILDLIGDFALLGAYPQCEVIAIKSGHKLHNIAVRELLPPGDVAAHATAVP"
     gene            complement(1248..>1790)
                     /locus_tag="VKJ77_15175"
     CDS             complement(1248..>1790)
                     /locus_tag="VKJ77_15175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HMC46659.1"
                     /translation="IAGDRVILQTGATVGSDGFGWAFVEGALRKIPQIGNVTLGDDVE
                     IGSNTCVDRGQTGATSIGTGTKIDNLCQIGHNSRIGKHSALAAFNGLAGTTIIGDYVQ
                     SGGQNGFAGHITVGSRVTIAGGSHVWGDVPDDSKLSGRPARNHRDEVRGQALLRKLPK
                     LFERVDALEIAIDDSSPKPH"
BASE COUNT          339 a          553 c          538 g          360 t
ORIGIN      
        1 agccgatatt catttttgtt tttatgacgt acgcttccat catgagctga tcgcccggta
       61 cgaccgggcg gcgaaacttc gctttatcga tgccggccag atacggaacc ttgcgcgcga
      121 tatcgcccgg ctcgagaatg accgtgccgc ctagttgcgc gagtgcttcg atcatgtaca
      181 ctccgggcaa gaccgggtta cccgggaagt gtccggtaaa catcggctcg ttggccgtta
      241 cattttttat gccgcgcgcg aacttcatcg gttcaagttc gagaatccgg tcgatgagca
      301 acatcggata gcgatgcggc aagatccgca tgatctcgcg aatatcgaga atcgccatta
      361 cggtacggca gtcgcgtgtg cggctacgtc acccggcggc agcaactcgc ggacggcgat
      421 gttgtgcagt ttgtgtccgc tcttgattgc gatcacttcg cactgcggat acgcacccaa
      481 cagcgcaaag tcgccaatca aatcgaggat cttgtgacgc acgggttcgt gcgccgcgcg
      541 ctcgggtgcg atcgggccgt ccggaccgta cacgacggcg ttgtcgatcg tgccgccttg
      601 ggccaggccg cggcgcaaca gcgattcgac ttcgtgcaag aacccgaacg tgcgaccgaa
      661 ggcaatctcg cgcacgaagg tctcgggggt gatttcaaga tcgagatact gcgtgccgat
      721 cggtgcttcg aagtcgatgg tcatgcgcac gcgaaaagtt gaggacggcg caacgatcag
      781 cgtcttatcg ccatcacgga agagctgcgg ctccgtgcaa ataaagcgcc tgcgcgcttc
      841 tttctggacg accgttcccg tcgcgacaat ggcgtcggcg aacaccttcg cgctcccatc
      901 cattaccggc acttccgggc cgtcaacggc gatgagcgcg ttgtcgatac ccattccaag
      961 cagggcggac agcaaatgct cgaccgtcga taccgtgtgt tccccgcagc cgagtaccgt
     1021 cgcgcgtcgt gtatcgacga cgtaatcggc gcgcgccgga aattcgactg cgtcatttaa
     1081 gcgaaagcgc aatcccgtat ccgccgctgc cggaagaatg cgaacgcaag cgggcgcggc
     1141 cgtgtgtagc ccggcgcccg cgaattcgat cgcgtctcgc aacgtcgatt gatactgcag
     1201 tctgttactc ttcgggtgcg aggcggagct cgtcgagctt cgtctcatca atgcggcttg
     1261 ggcgacgagt catcgatggc gatctctaac gcatcgaccc gttcaaaaag cttcggaagc
     1321 ttgcggagca atgcctgtcc tcgcacttcg tcgcgatgat tacgcgcggg ccggccgctc
     1381 agcttcgaat cgtcgggtac gtcgccccag acatgcgagc ccccggcgat cgtcacgcgc
     1441 gaacccaccg taatgtggcc ggcgaagccg ttctgtccac ccgattgcac gtagtcgccg
     1501 atgatagtcg tgccggcgag gccgttgaat gccgcgagcg ccgaatgctt gccgatgcgc
     1561 gagttgtggc cgatttgaca gaggttgtcg atcttggtgc ccgtgccgat cgacgtcgcg
     1621 ccggtctgcc cgcggtcgac acaggtgttc gagccgatct ccacgtcgtc acccagcgtc
     1681 acgtttccaa tttgcggaat cttccggagc gcaccctcaa cgaaggccca gccgaagccg
     1741 tcgctgccga cggtcgcacc ggtctgcaag atcacgcggt cacccgcaat
//
LOCUS       DATGBK010001088         2020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_151458, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001088 DATGBK010000000
VERSION     DATGBK010001088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151458"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..759
                     /gene="xseA"
                     /locus_tag="VKJ77_15180"
     CDS             <1..759
                     /gene="xseA"
                     /locus_tag="VKJ77_15180"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HMC46660.1"
                     /translation="DVLIVCRGGGSIEDLWAFNEEVLARAIAESAMPVVSGVGHETDF
                     TIADFAADVRAPTPTAAAELVSPQRVLLLRDLDHRHAALARGFGRMMERRAQQLDWLA
                     RRLVSPAERLERQRTHLRQLAVRLASAGARPVRDARARFALVQMRWQRWRPDLAAERE
                     HLMRLAQRLSVSQGRRHERAAARVSELSARLQVLSPQRTLERGYAALIDTQSGRAVRA
                     PNALKPKRPLTVHLAEGSADIVLADIQPRLSDEF"
     gene            1035..1616
                     /locus_tag="VKJ77_15185"
     CDS             1035..1616
                     /locus_tag="VKJ77_15185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-Mn family superoxide dismutase"
                     /protein_id="HMC46661.1"
                     /translation="MEHTLPPLPFDKNALVPNMSEETLEYHYGKHHQTYVTNLNKLIP
                     GTEFENLPLEEIVKKASGGVFNNAAQIWNHTFFWNSLSPKGGGAPAGALGDAINAKYG
                     SFDKFKEEFAKVATGTFGSGWTWLVKKPDGSLDIVSTSNDATPLTTDAKALLTIDVWE
                     HAYYIDYRNARPKFIEAFWNIANWDFASKNFGA"
     gene            complement(1555..>2020)
                     /locus_tag="VKJ77_15190"
     CDS             complement(1555..>2020)
                     /locus_tag="VKJ77_15190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC46662.1"
                     /translation="EIRGAPLTDKTTTEWLEVLQRADIAVKPCHTLETLTRDPHLEAV
                     GLLQSDEHPTEGKTFAIRSTISFDNVYPPLPPFAQPRGWDTLAVLEDIYLSHAGKQKA
                     LKREGFHFYYRFQTSLRRAVWIFQTILSRYRDLKRRNSSTQSPSSQCSRTLR"
BASE COUNT          403 a          580 c          615 g          422 t
ORIGIN      
        1 gatgtgctga tcgtgtgtcg cgggggcggt tcgattgaag acctgtgggc gttcaacgag
       61 gaagtgctcg cccgcgcgat agccgaaagt gcgatgccgg ttgtcagcgg cgtaggccat
      121 gagacggatt tcaccatcgc cgatttcgcc gccgatgtcc gcgcgcccac gcccacggca
      181 gccgccgaac tggtcagtcc gcagcgcgtg ttgttgttgc gcgatctcga tcaccgtcat
      241 gccgcgctgg cgcgtggttt cggccggatg atggagcggc gcgcgcagca acttgattgg
      301 ctggcgcgcc ggctggtcag cccggccgag cggctggagc gtcagcgcac gcacttgcgg
      361 caacttgcgg tgcggctggc gtcggccggt gcgcgcccgg tacgcgatgc ccgcgcgcgt
      421 tttgcgctcg tgcaaatgcg ctggcaacgc tggcgtcccg atctcgctgc cgagcgggaa
      481 catctgatgc gtcttgcaca acgcctgagc gtttcgcaag ggcgccggca tgaacgggcg
      541 gcggcccggg tatcggagtt atcggcgaga ttgcaggtgt tgagcccgca acgcacgctc
      601 gagcgcggct acgcggcttt gatcgatacg caatccggac gcgccgtgcg cgcgccgaat
      661 gcgttgaagc ccaaacggcc gttgaccgtg catctggcgg aaggatcggc ggatatcgtg
      721 ctcgctgata tccagccccg gctctccgat gaattctgac gccggcggcg gtgtgcatcg
      781 aatgaaactg ccactgcatt tacacgatgc acaccccgtt ttttacaaga cctgcacggg
      841 tgcttgaaag cccgtatttt tgacggctta gaaggaacgt tcgagcattt tttacgccgc
      901 tgttaaagct tcgtaatcga tactgctcat aaaaacccgc aatttgcggg gttatcccaa
      961 ctcgcctaca atcgagtgct ccattgcttc actcctcacg tcccccataa tcatcataga
     1021 aggaagctcg caccatggaa cataccctcc cgccgttgcc gttcgacaag aacgcgcttg
     1081 ttccgaacat gtcggaagaa acgcttgagt atcactatgg caagcatcac caaacctatg
     1141 tgacgaacct gaacaagctg attccgggta ccgaattcga aaacctgccg cttgaagaaa
     1201 tcgtcaagaa ggcatcgggt ggcgtgttca acaacgcagc ccagatctgg aaccacacgt
     1261 tcttctggaa cagcctgtcg cccaagggtg gcggcgctcc ggccggcgca ctcggcgacg
     1321 caatcaacgc caagtacggc tcgttcgaca agttcaagga agagttcgcg aaggtcgcaa
     1381 ccggcacgtt cggttcgggc tggacgtggc tcgtgaagaa gccggacggt tcgctcgaca
     1441 tcgtgtctac cagcaatgac gctacgccgc tgaccaccga tgcgaaggcg ctgctgacca
     1501 tcgacgtgtg ggaacacgcg tattacatcg actatcgcaa tgcgcgtccg aagttcatcg
     1561 aagcgttctg gaacattgcg aactgggact ttgcgtcgaa gaatttcggc gcttgaggtc
     1621 tctgtagcgt gacaaaatag tttggaaaat ccagactgcg cgtcgcaatg aagtttggaa
     1681 gcggtagtaa aaatgaaagc cctctctttt gagggctttc tgttttcctg cgtgggatag
     1741 atagatgtcc tccagcaccg cgagcgtatc ccaaccgcgc ggttgtgcga acgggggcag
     1801 cggcggatac acgttgtcga agctgatggt cgagcgtatc gcgaaggtct tgccttctgt
     1861 cggatgttca tcggattgca gtagtccgac agcttcaaga tgcggatcac gggtcaatgt
     1921 ctcaagcgtg tgacatggct taacggcgat gtctgcccgc tgcaggacct cgagccactc
     1981 agtcgtcgtc ttgtcggtta gcggtgcgcc ccgtatctcg
//
LOCUS       DATGBK010001089         1539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_174760, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001089 DATGBK010000000
VERSION     DATGBK010001089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174760"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VKJ77_15195"
     CDS             <1..431
                     /locus_tag="VKJ77_15195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003262850.1"
                     /note="catalyzes the conversion of salicylyl-CoA to
                     gentisyl-CoA; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional salicylyl-CoA
                     5-hydroxylase/oxidoreductase"
                     /protein_id="HMC46663.1"
                     /translation="AHDWVEGGITPDDAVLIARAFKEAGADMIDVSSGQVSKEEKPVY
                     GRMFQTPFSDRVRNEAGIATIAVGAISEADHVNSIIAAGRADLCAVARPHLANPSWTL
                     DQAAKLGYVDITWPKQYYAAKSQLERGYERERAQRAEGEA"
     gene            428..1210
                     /locus_tag="VKJ77_15200"
     CDS             428..1210
                     /locus_tag="VKJ77_15200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC46664.1"
                     /translation="MNTGTHPLTGQHAVVTGGGSGIGAAIAHMLVTAGAQVTLMGRDA
                     ARLAYQAEVLSEAGTVHVQSVDVTSADSVAAAFAATRGRGFIDILVNNAGQAEAAPFA
                     KTDLALWKRMLDVNLTGVFLCTQEVLPAMLERRSGRIVNVASTAGQVGYAYVAAYCAA
                     KHGVIGLTRSLALEVATRGVTVNAVCPGYTETGLLEQSIEKIVAQTGRSEVEAREALL
                     RSNPQRRFVTPDEVASSALWLCLPESRSITGQTISISGGEVM"
     gene            1207..>1539
                     /locus_tag="VKJ77_15205"
     CDS             1207..>1539
                     /locus_tag="VKJ77_15205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC46665.1"
                     /translation="MNKPAARTAKTAAPEKAKAAGNVVDLEMSTGVDSHMGLRLWLRM
                     LTTTNLVQAELRKRLRAEFDTTLPRFDLMAQLERHPDGLKMNELSRRLMVTGGNVTGL
                     TDQLEKEGF"
BASE COUNT          300 a          452 c          508 g          279 t
ORIGIN      
        1 cagcgcacga ttgggtggag ggcggcatca cgcccgacga cgccgtcctg atcgctcgag
       61 cgttcaagga agcaggcgcg gacatgatcg acgtatcgtc ggggcaggtg agcaaggagg
      121 agaagccggt ctatggccgc atgtttcaga cgcctttctc tgatcgcgtg cgcaacgaag
      181 caggtattgc gaccatcgcg gtcggggcga tctcggaagc cgaccacgtg aacagcatca
      241 ttgcagcggg ccgcgccgac ctctgcgccg tggcgcgtcc gcatcttgcc aatccttcgt
      301 ggacgcttga tcaggccgcg aagcttggtt atgtcgatat cacctggccg aagcagtatt
      361 acgccgcgaa gtcgcagctc gagcgcggct atgaacgtga gcgcgcgcag cgtgcggagg
      421 gcgaagcatg aacacgggca cgcacccact cacaggccaa cacgcggtgg tcacgggcgg
      481 cggcagcggt attggcgccg ccatcgccca catgctggtg acagccggcg cgcaggtcac
      541 gttgatgggc cgggatgcag cgcggcttgc ctatcaggct gaagtcctta gcgaagccgg
      601 aaccgtgcat gtgcagagcg tcgatgtcac gtccgccgat tcggttgctg cggcgtttgc
      661 tgctacacgc gggcgcggct tcatcgacat cctggtcaac aacgcggggc aggccgaagc
      721 tgcgccgttt gcgaagaccg atctggcgct gtggaaacgc atgctcgacg tgaatctgac
      781 gggcgtgttt ctctgcacgc aagaggtctt gccagcaatg ctcgagcggc gcagcgggcg
      841 cattgtcaac gtggccagta ctgctggaca agtgggttac gcctacgtcg ccgcatattg
      901 cgcggccaag catggcgtga tcggtttgac acgttcgctc gcgctcgagg tggcaacgcg
      961 tggcgtgacc gtcaacgccg tatgtcccgg ttataccgaa accggactgc tcgaacagtc
     1021 gatcgaaaag atcgttgcgc agaccggacg tagcgaggtc gaggcacgcg aagcactgct
     1081 gcgatccaat ccgcaacgtc gctttgtgac accggacgaa gtcgccagtt cggcgttatg
     1141 gctgtgcttg ccggagtcgc gatcgatcac cggccagacc atttctattt caggtggaga
     1201 agtaatgtga acaagcccgc cgcccgcacg gctaaaactg ccgcgcccga gaaggccaag
     1261 gccgcaggta acgtcgtcga tcttgagatg agcactggcg tcgacagcca catggggctg
     1321 cgtctatggc tgcgcatgct caccacgacg aatctggtgc aggctgagtt gcgtaagcgc
     1381 ctgcgcgccg aattcgatac cacgctgccg cgctttgacc tgatggcgca acttgagcgc
     1441 catcccgacg gcctgaagat gaacgagctg tcgcgccgtt tgatggttac cggcggcaac
     1501 gtaacgggtc tcacggacca gttggagaag gaaggtttt
//
LOCUS       DATGBK010001090         2380 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_291033, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001090 DATGBK010000000
VERSION     DATGBK010001090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291033"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..437
                     /locus_tag="VKJ77_15210"
     CDS             <1..437
                     /locus_tag="VKJ77_15210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC46666.1"
                     /translation="PHFWQALCRKTGLDALAADPRFDTVRKRALHVNEIVPQLHAALA
                     AKSALEWEALFGEDVPCAAARTVEDMFDDPQVLAEDMIATYEHPVVGRYRGLKRSIRF
                     GRTPGPEPFAAPTFGQDSDQVLSEQGMSGDDIEALRAKRVIE"
     gene            518..1303
                     /locus_tag="VKJ77_15215"
     CDS             518..1303
                     /locus_tag="VKJ77_15215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013520539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC46667.1"
                     /translation="MHVYDARFPHIGRMVNGATAHDYRREFQARVGTTRTVVVTPRLY
                     GVDNRVTLDAIQQLGADRTRGVAVLRPDVTDAELVTLDTGGIRGIRFTLYTPVQAVVG
                     FEMVELLSQRVHELGWHVQLHWTAAQIVEHEALLRRLPSKIVFDHLARLPLPEGIDHP
                     AFGIVRSLLDGGRAWLKLSGPYLDSRVGEAQRYSDMDRTARAWVDAAPERLVWGSDWP
                     HTTESEAGKPNDTALFDLLSHWVEDPAQRRAILVDNPAKLYDF"
     gene            1351..>2380
                     /locus_tag="VKJ77_15220"
     CDS             1351..>2380
                     /locus_tag="VKJ77_15220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00366 family protein"
                     /protein_id="HMC46668.1"
                     /translation="MKPASASPSGGSGKTRFTNATIDLFERVIPDPFVLAILITAFVA
                     VVSALFAPHASFMGIVGGWYKGFFDILTFAFQITLILVTGHAFAHAPPVQRLFRAVVS
                     LARTPVQAATLTFVSVAVASFFNWGFGLVVAALLAREVAKRMRVDFAWIVAAGFSGWV
                     VWASGISSSIALAQATHGSAMNVVEKLTGQVLPFSSTVFTAFNLVPTLVMLVATPIVL
                     AFLKPADEDIVVLDLDKNPDPPVKTRPAGKLTPAQWLEYSWLGSAFIGAAGVSFLAIA
                     WTHKTSFSGVNAVIFVMFIAGVVLHGYPLAYADAIKNAARQTGSMMLQYPLYGGIMGI
                     MEATGLPDV"
BASE COUNT          418 a          715 c          763 g          484 t
ORIGIN      
        1 cgccgcattt ctggcaggcg ctgtgccgca agacgggcct cgatgcactc gccgccgatc
       61 cgcgtttcga tacggtgaga aagcgtgcgc ttcacgtgaa tgaaatcgtg ccgcaacttc
      121 acgccgcgtt ggccgcgaag agcgcgctgg aatgggaagc gctgttcggc gaagacgtgc
      181 cgtgcgcggc ggcgcggacg gtggaagata tgttcgacga tccgcaggtg ctggccgaag
      241 acatgatcgc gacgtatgag catccggtgg tggggcgata tcgcgggctc aagcgctcga
      301 tccggttcgg ccggacgccc ggtcccgaac cttttgccgc gcccacgttc ggacaggatt
      361 cagatcaggt gttgagcgag caaggcatgt cgggcgatga cattgaagcg ctgcgggcga
      421 agcgcgtaat tgagtaaaag cgaatcaaac gagccgaaga aggagaaacg tcttgcccgc
      481 aatcaccttg gcgccaccgc ttgcctgcga tgcgcacatg catgtctacg atgcccgctt
      541 tccgcacatc ggcaggatgg tgaacggcgc caccgcccat gattatcggc gtgagtttca
      601 ggcgcgcgtt ggcactacgc gtacggtggt tgtgacgccg cgactctatg gcgtcgacaa
      661 ccgcgtgaca ctcgacgcga tccagcaact gggcgccgac cgtacgcgcg gcgtggcggt
      721 gctgcgcccc gatgtgaccg atgcggaact ggtcacgctg gatacgggcg gtatccgcgg
      781 gattcgcttc acgctgtaca cgccggtgca ggcggtggtc ggcttcgaga tggtggagtt
      841 gctgtcgcag cgggtgcatg agcttggttg gcatgtccag ttgcattgga ctgcggcgca
      901 gatcgttgaa catgaggctt tgctgagacg cttgccatcg aagatcgtct tcgatcacct
      961 cgcgcgtttg cctttgcctg agggaatcga tcaccccgcg ttcggcatcg tgcgctcgct
     1021 gctggacgga ggccgcgcgt ggctgaagct gtcgggtccg tatctcgatt cgcgcgtggg
     1081 cgaagcgcaa cgctacagcg atatggaccg caccgcgcgc gcatgggtcg atgccgcgcc
     1141 cgagcggctt gtatggggca gcgactggcc gcatacaacg gaatcggagg ccggcaagcc
     1201 caacgatacc gcgctgttcg acctactttc gcattgggta gaagaccctg cacaacgccg
     1261 cgcgattctc gtcgataacc ccgccaagtt atatgacttc tgacaccgcc cgacgctaaa
     1321 acatccaaca acaatgacaa ggagactgac atgaaaccgg cgagcgcttc accttcgggc
     1381 ggcagcggta aaacgcgctt caccaacgcg accatcgacc ttttcgagcg cgtcattccc
     1441 gacccgttcg ttctcgccat cctgatcacc gcgttcgtcg cggtggtgtc tgcgttgttc
     1501 gcgccgcacg cgtcgttcat ggggattgtc ggcggctggt acaaaggttt cttcgatatc
     1561 ctgacgttcg cgttccagat cacgctgatc ctcgtcacgg gccacgcgtt cgcacatgca
     1621 cccccggtgc agcggctttt tcgtgcggtc gtttccctcg cgcgcacgcc ggtccaggct
     1681 gccacgctca cgtttgtgtc agtagcggtt gcatcgtttt tcaactgggg tttcggactc
     1741 gtggtcgcag cgctgctcgc tcgtgaagtc gccaaacgca tgcgtgtgga ctttgcgtgg
     1801 atcgtcgcgg ctggtttctc cggctgggtc gtatgggcga gcggcatctc gagttcaatt
     1861 gcactcgccc aggcgacgca cggcagcgca atgaatgtcg tcgaaaaact gacggggcag
     1921 gtgttgccgt ttagcagcac ggtattcact gcgttcaatc tggtgccgac gctcgtgatg
     1981 ctggtcgcca cgccgatagt actggccttc ctcaagcccg ccgatgaaga catcgtcgta
     2041 ctcgatctcg acaagaatcc cgatccgccc gtcaagaccc gtcctgcggg caagctcacg
     2101 ccggcgcagt ggctcgaata ttcgtggctg ggcagcgcgt ttatcggtgc ggcaggggtg
     2161 tcgttcctgg ccattgcgtg gacgcacaag accagcttca gcggcgtgaa cgcggtgatc
     2221 ttcgtgatgt tcatcgcggg cgtggtgctg catggctacc cgctcgctta cgccgatgcc
     2281 atcaagaatg ccgcgcgcca gaccgggtcg atgatgctgc aatacccgct ctacggcggc
     2341 atcatgggga tcatggaggc gaccggtttg cccgacgtgc
//
LOCUS       DATGBK010001091         1690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_174769, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001091 DATGBK010000000
VERSION     DATGBK010001091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174769"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            214..1182
                     /gene="ispH"
                     /locus_tag="VKJ77_15225"
                     /gene_synonym="lytB"
     CDS             214..1182
                     /gene="ispH"
                     /locus_tag="VKJ77_15225"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HMC46669.1"
                     /translation="MRIILAQPRGFCAGVVRAIEIVDRALERHGAPVYVRHEIVHNRH
                     VVDNLRSKGARFVEELDEVPHGAVAIFSAHGVAQTVEADAEARGLDVLDATCPLVTKV
                     HVQGRQYVAQGRTLILIGHAGHPEVEGTIGQIPGTVVLVQSEAEVATLALPVDAPVAY
                     VTQTTLSVDDTRDIIDALHRRFSDIVGPDTRDICYATQNRQAAVRELSKQVDVLLVVG
                     ATNSSNSNRLCEIGAETGVPSYLVADGSEVKADWFANAQTVGITAGASAPEEMVKHVI
                     NALRALGPVEVSTMSGREEKVEFKLPAKLTKPLAAATASAGALRED"
     gene            1196..>1690
                     /gene="hpnH"
                     /locus_tag="VKJ77_15230"
     CDS             1196..>1690
                     /gene="hpnH"
                     /locus_tag="VKJ77_15230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosyl-hopene transferase HpnH"
                     /protein_id="HMC46670.1"
                     /translation="MSIPMLQKVRVGAYIARQHFMRNKRYPLALMLEPLFRCNLACNG
                     CGKIDYPDPILNQRISMEDCLAAVDECNAPVVSIAGGEPLLHKEMPQIVKGIIARKKF
                     VYLCTNALLMEKKMDDYEPNPYFVWSVHLDGDKQAHDHSVSQDGVYEKAVAAIKEAKR
                     RGFRV"
BASE COUNT          367 a          495 c          500 g          328 t
ORIGIN      
        1 aacaccctct tacaagcatc caaaaactga acgagttaga atacgcggtc aacttcggcc
       61 ttaaagttga aacgaatggt tcattgccag ccatttgttt ccgaaagctt tttccgagaa
      121 gctttaattt tgcttacaac aaatcaaccg gatttgatcg aagcctatag ccggttccat
      181 tcgaaacccg cgccagtcgg agttcgcccg aatatgcgta ttatccttgc tcaaccccgc
      241 ggcttttgtg cgggcgtggt ccgcgcgatc gagattgtcg atcgcgctct tgaacgacat
      301 ggcgcgcccg tctacgtgcg ccatgagatc gttcacaacc ggcatgtcgt cgacaacctg
      361 cgtagcaagg gcgcgcgttt cgtcgaagaa ctcgacgaag taccgcatgg cgctgttgca
      421 attttcagcg cgcatggcgt agcgcaaacg gtggaagccg acgcagaagc gcgcggcctg
      481 gatgtgctcg acgccacctg cccgctggtg acgaaggtcc acgtacaggg ccggcaatat
      541 gtcgcgcagg gccgcacgct gatcctgatc ggccatgcgg ggcacccgga ggtggaaggg
      601 accatcggcc agattccagg cacggtggtg ctcgtgcaaa gcgaagctga agtggcaacg
      661 ctcgcgctgc ctgtcgatgc ccccgtcgcc tatgtcacgc agaccacttt gtcggtggac
      721 gatacgcgcg acatcatcga cgcattgcat cgccgtttta gcgacatcgt cggcccggat
      781 acgcgcgaca tttgctacgc cacgcaaaac cgccaggcgg cggtgcgcga gctgagcaag
      841 caagtcgacg tattgctggt ggttggggca accaacagtt ccaactcgaa tcgtctatgc
      901 gagatcggcg ccgaaaccgg cgtgccgagc tacctcgtgg cggacggctc ggaagtgaaa
      961 gccgactggt ttgcgaacgc gcagactgtc gggattacgg ccggcgcgtc cgcgccggaa
     1021 gaaatggtta agcacgttat taatgcactg cgcgcgctgg gtcctgtcga agtctcgaca
     1081 atgtccggcc gcgaagaaaa agttgaattc aaactccccg cgaagctgac gaagccgctt
     1141 gctgcggcaa cggcatccgc cggcgccctt cgcgaagatt aaggagcaca cgcaattgtc
     1201 tattccgatg ctgcaaaaag tccgggttgg cgcttacatc gcgcgccagc atttcatgcg
     1261 caacaagcgc tatccgctcg cgctgatgct cgagccgctg ttccgctgca atctggcgtg
     1321 taacggctgc ggcaagatcg actacccgga ccccatcctg aaccagcgca tctcgatgga
     1381 agactgcctc gcggccgtcg acgaatgcaa tgcgccggtg gtgtccatcg ccggcggcga
     1441 gccgctgctg cacaaggaaa tgccccagat cgtgaagggc atcatcgcgc gcaagaagtt
     1501 cgtttatctc tgcacgaacg cgctgctgat ggaaaagaag atggacgact acgagccgaa
     1561 tccgtacttc gtctggtcgg ttcacctcga tggcgataag caagcgcatg accattcggt
     1621 ctcgcaagac ggtgtgtacg agaaggctgt tgcagccatc aaggaagcga agcgccgtgg
     1681 tttccgcgtg
//
LOCUS       DATGBK010001092         2479 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_267877, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001092 DATGBK010000000
VERSION     DATGBK010001092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2479
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267877"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..1362
                     /locus_tag="VKJ77_15235"
     CDS             28..1362
                     /locus_tag="VKJ77_15235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011547759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HMC46671.1"
                     /translation="MLAQPPRPGVPGSPLIRFAVVTVLTGIGAGLGGMALALLLHFIQ
                     HVAYGYSITHLVGHESFYEGVEAASAGRRVAVLVLCGLIAGCGWFVIYRYGRPLVSIK
                     KAVASDDPRMPPVTTTAHALLQIITVALGSPLGREVAPREIGSLLAGWLSHYAGLTVE
                     QTRLMVACGAGAGLAAVYNVPFGGAIFVLEVLLRSFELRVVIPALVTSVIAAVVAWLG
                     LGDESQYVVPHFGLSANLVTWSIVTGPVFGVAAFAFVQVTTKARAAAPKGWTLPLLSL
                     VNFLIIGLLAVSFPQILGNGKTPAQLGFSNELTIGLAATLLVIKVAITASSLRAGAQG
                     GLLTPGMSNGALLAIVLGGIWTLMWPGTPMGAFAIVGATAFLASSMKMPITALVLMVE
                     FTRVDHDFIVPMLCAVAGSITINRLLELRLQAQQARSSNASSELKGAAISRG"
     gene            complement(1554..>2479)
                     /locus_tag="VKJ77_15240"
     CDS             complement(1554..>2479)
                     /locus_tag="VKJ77_15240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46672.1"
                     /translation="ATLINLMFCGFPLGAAFGGFLAAWMIPAFGWRSVLVLGGTTPLL
                     LAVVLLIALPESVRYRVAHAHPVDKIRATLSRIGRSAADAASFVMTEQAQAVPGKSGI
                     RLVLSREYIVGSVMLWLTYFMGLVIFYASINWMPILLKEAGLSPQRATLISALFPLGG
                     VGAVLCGVLMDRFNPNRIIAACYALTAVSVYCIGHSAGNISLLIVVVFAAGVLMNTAQ
                     SSMPALAAAFYPTQGRGTGVAWMLGIGRFGGIAGSFLVAELTRQHFTFESIFAVVAVP
                     GVLACIALLIKQAVQPLYANVKVSDIGTVSH"
BASE COUNT          463 a          788 c          736 g          492 t
ORIGIN      
        1 cccctttcat atcaccaaca tttttcgatg ctcgctcaac caccccgccc cggcgttccc
       61 ggcagcccac tgatcagatt cgcggtggtc accgttctta ccgggatcgg cgccgggttg
      121 ggcggcatgg cgttggccct cctcctgcat tttattcagc atgtcgctta cggctacagc
      181 atcacgcatc tggtggggca cgagagtttc tatgagggtg tcgaggctgc atcggctggc
      241 cgccgagtcg ctgtgctcgt gctctgcggt ctcattgcag gctgcggctg gtttgtcatc
      301 tatcgctacg ggcggccgct ggtcagcatc aagaaggccg ttgcatccga cgacccgcgc
      361 atgcctcccg tcacaacgac cgcgcatgcc ttgcttcaga tcatcaccgt tgcgctcggc
      421 tcgccgctcg gccgcgaagt cgcgcctcgc gagatcggct ccctgcttgc ggggtggctg
      481 tcgcattacg ccggcctcac cgtcgagcaa acccgtttga tggtggcttg cggggcaggc
      541 gccgggctcg ccgccgtata caacgttccg tttggcggtg cgatctttgt tctcgaagta
      601 ttgctccggt ctttcgagct gcgcgtcgtg attcccgcgc tggtcacctc ggtcatcgca
      661 gccgtggttg cgtggctcgg cctaggcgac gaatcgcaat acgtcgtgcc gcacttcggc
      721 ttgagcgcga atctagtgac atggtccatt gtcaccggtc ccgtttttgg cgtcgccgcg
      781 ttcgcgttcg tccaagtgac gacaaaagcc cgcgcggccg caccgaaggg atggacgttg
      841 ccgcttctgt cgctcgtcaa tttcctgatc atcggcttgc tcgcggtgtc gttcccgcag
      901 atcctcggca acggcaagac ccctgcgcaa ctgggcttca gtaatgagct gaccatcggc
      961 cttgcagcaa cgctgctggt catcaaggta gccataaccg ccagcagcct gcgcgcgggt
     1021 gcgcaaggcg gcctgctcac ccccggcatg tccaacggcg cgctgctggc tatcgtgctg
     1081 ggcgggatct ggacgttgat gtggccgggt acgcccatgg gcgctttcgc gatcgtcggg
     1141 gccacggcct ttctcgcttc atcgatgaaa atgccgatca ctgcgcttgt tctcatggtc
     1201 gagttcacgc gtgtcgatca cgatttcatc gtgcccatgt tgtgcgccgt ggccggatcg
     1261 atcacgatca atcgcctact tgaactcagg ctgcaagcgc agcaggcgcg atcttcaaac
     1321 gcgagctccg agctcaaagg cgccgccata tcgcgaggct gaagcaacgc accggatcaa
     1381 gaacaagttg gtaaggaata gataatatgg ggaaagccct gtttcaaccg aaaaccccta
     1441 tgcttgggtc acgtcctcgc cgggtccccc tcgtcccggc gggcggcgct ccgtaagctt
     1501 tcacccgcgc cttcgagaga ggcgcgggtt ttttttatat gtcgtgcgca cgactagtgc
     1561 gaaaccgttc ctatgtcgct aaccttgacg tttgcgtata gcggttgaac tgcttgtttg
     1621 atcagcagtg caatgcatgc gagcactcca ggcacggcca ctacggcaaa gatgctctcg
     1681 aacgtgaagt gctgccgggt cagttcggcc accaggaacg agcccgcgat cccaccgaac
     1741 cggccaatgc caagcatcca tgcaacgccg gtgccgcgcc cctgggtcgg atagaacgcg
     1801 gcggccagcg cgggcatgga tgattgcgcc gtgttcatca gcacgccggc cgcgaacacg
     1861 acgactatca gcaagctgat atttccggcg gagtgcccaa tgcaatacac gctgacagcg
     1921 gtcaacgcat agcatgcggc gataatccgg ttcggattga accggtccat caagacaccg
     1981 cacagcacgg cgcccacgcc gccaagcggg aacagtgcgg agatcaacgt agcgcgctgc
     2041 gggctcagac ccgcttcctt cagcaggatc ggcatccagt tgatcgatgc atagaagatg
     2101 acgagtccca tgaaataggt cagccaaagc atgaccgacc caacgatgta ttcccgcgac
     2161 agcaccagcc ggataccgct ttttcccggc acggcctgag cctgttccgt catcacgaat
     2221 gaagcggcgt cggcggcgct gcgaccgatg cggctaagcg ttgcgcgaat cttgtcgacg
     2281 ggatgcgcgt gtgcaacccg gtaacgcacc gactcaggaa gtgcgatgag caacacgacc
     2341 gccagcagaa gcggggtcgt gccgcccaac accagaacgc tgcgccatcc gaaagcggga
     2401 atcatccacg ccgcgagaaa accaccgaat gcagcaccga gcgggaagcc gcagaacatc
     2461 aggttgatca gcgttgcgc
//
LOCUS       DATGBK010001093         4021 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_244451, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001093 DATGBK010000000
VERSION     DATGBK010001093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4021
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244451"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..323)
                     /locus_tag="VKJ77_15245"
     CDS             complement(186..323)
                     /locus_tag="VKJ77_15245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46673.1"
                     /translation="MKESVPLEEFSALDDWLPEAAQWQPYRPQATRERQAAERADSAA
                     G"
     gene            complement(339..692)
                     /locus_tag="VKJ77_15250"
     CDS             complement(339..692)
                     /locus_tag="VKJ77_15250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4148 domain-containing protein"
                     /protein_id="HMC46674.1"
                     /translation="MKTAIATLSISAISAIVSTTAFADGGIGHAGTYQTAVTSQSTMT
                     RAQVRAELAASYANGTLPALNRNTYPERSMAGIAIAEQHEQRARDAAAAEQRNRGIVE
                     FANGSVTQSGNTHVQ"
     gene            complement(1182..2090)
                     /locus_tag="VKJ77_15255"
                     /pseudo
     CDS             complement(1182..2090)
                     /locus_tag="VKJ77_15255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900991.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            2288..3142
                     /locus_tag="VKJ77_15260"
     CDS             2288..3142
                     /locus_tag="VKJ77_15260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase fold domain-containing
                     protein"
                     /protein_id="HMC46675.1"
                     /translation="MASTLDLGLCIEDVRIAGHAQPITLRSYRPASDGTVLPVVLYFH
                     GGGFVRGTLDDADVTASTIARDTAAWVISVGYSLAPAFPFPAAPEDAYRAAQWAVANA
                     RAQRADANRIGVAGHDAGGNLATCLAAIARDRGDIVILAQALLAPLLDPSMTRMADEN
                     KVRSPDICMAECAQCYRAYLPNASQRLHPYAAPLESRRLAGLPPALIASAQHDLLHIE
                     AEKYAGELIAAGVPTEVTRHVNASHNALAADPAALADVVAFFKKRLRARTVAPLGDTL
                     KIQTISTT"
     gene            3155..>4021
                     /locus_tag="VKJ77_15265"
     CDS             3155..>4021
                     /locus_tag="VKJ77_15265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006412994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC46676.1"
                     /translation="MSITRKRLTVALGAALVVAGIGTFTAMHGFGHGDLPVNGAEAAV
                     KPSAPAMEVDVATVVSKTITDYQNYSGRLEAVDKVEIRPLVPGTIVAVHFADGALVKK
                     GDPLFTIDPRPYVAQVDQAAAQLAAAQARNGYTSTDAARAERLLADNAIAKRDYDEKQ
                     NASHEAAANLKAAQAALETAKINLTYTQIVAPVSGRVSRAEMTVGNIVSTGSSAPLLT
                     TLVSVSPIYASFDVDEQTYLRYLSRDSRASVPVSLGLANEDGFSREGKVASVDNQLDT
                     GSGTIRVRARFDN"
BASE COUNT          810 a         1180 c         1236 g          795 t
ORIGIN      
        1 cgcaaggacg gttgcgactt ctgtacagcg tgcggcgaag taggggcgtg cggttgaagc
       61 atgaatgcct gatcactttc acccgcgatc atgcacccag tcggattgcc gcacgctcac
      121 attcaacttg gtgattccct cgggcgcgga cttgggaagt ccgcgccggc aaagcgctga
      181 acccttcaac ctgccgcaga atccgcccgc tccgccgcct gacgctcacg cgttgcttgc
      241 ggccggtacg gttgccattg cgctgcttct ggaagccagt cgtcgagcgc ggagaactct
      301 tcaaggggta ctgattcttt catgatggat tcctgtattt actgaacgtg cgtgttgccg
      361 ctttgtgtca ctgacccgtt cgcgaactcc acgattcctc gattgcgttg ttccgcagcg
      421 gccgcgtcgc gtgcacgttg ttcgtgctgc tcggcaatgg caatccccgc catgctgcgc
      481 tcggggtagg tgttgcggtt gagcgcgggc agcgtgccgt ttgcatagga cgcggccagt
      541 tcggcgcgga cttgcgcgcg ggtcatggtg ctctggctgg ttaccgcggt ctggtacgtg
      601 cctgcgtgcc caatgccgcc gtcagcgaat gcggtggtgg agacaatggc tgagatagcg
      661 gagatcgaga gtgttgcaat tgcggttttc atgcgtgctg ctcctgtcgg ttcattcgat
      721 aagcatcgaa cggggtcgat gcgatcagac tgatagcggg gcagcgggcg ccgatccaag
      781 caatgagctt aaatagcgaa cctaagcaac gagcctaggc aacgaaagag aatcacatcg
      841 actaatcggc gagccgcgct gcgacaggac gaaatgtagt caagcgagcg ccgcggataa
      901 atgaccgtta agcgaaaaga ttaatcgcgc caggcgaata atcgaaaaag cccttataga
      961 aagggctttt gcggcgaaac cagtattaac gacagggact taagccctta cccgcaagag
     1021 ggtcgaaaag gacttaaatg cacaagagag aggcccgatc gaacgggcct caagcaaaac
     1081 taaacgacca cctcggcggt gccggcaaca tccggcgtcc catgtttgac gatcgatttc
     1141 gctggcgtgg ccgtcggcag acagcgctgc tcggcgtctt cctggcccga aagcagagga
     1201 caccgttcaa ataattcggc ggcccagtcg acaaaaaccc gcaccttcgg cgacaaatgc
     1261 cggttatgcg gatacacgac cgaaatgggc atgggcaacg gtttccactg cggcaagact
     1321 tcgatcagtt cgccggaacg caaatgcgga agggccatga agcgcggtat ctggacgatt
     1381 ccgactcctt tgacgccgca cgcgatataa gcctcggcgt cattcacggc aatcttcccg
     1441 cgcatcttca cgtcgacgga tttcccatcg acaacgaagt ccatgtccat cacgcgaccg
     1501 gtgcggctgg aaaaataatt cacggccgtg tgctgctgca aatcctcgat ggtatgcggc
     1561 acgccatgaa gctcgagata ttccggactc gcagcggtca ggccctgaaa cacgccgatc
     1621 cggcgtgcga caaggctcga atcctgcagc gttcccacgc gaatgacaca atccacacct
     1681 tcctggatca ggtcgaccgg tttgtcgccg aaaccgatca tcaactcgat atccggataa
     1741 cgtgtgtgga attcgcaaag ctggggcatg acgatcatgc gcccgatcga acccggcata
     1801 tcgatccgca atttaccgcg cgggcccttg ccggtattgg cgaatgaact ctcggtttcc
     1861 tctatgtccg ccaagatccg cacgcagcgt tcgtaatacg cggcgccgtc tggcgtgaga
     1921 ttcaggcgtc gtgtcgtgcg ttgcaggaga cgcacgttga ggaacgcttc aaggttctga
     1981 atgatcgttg tcaccgaagc gcgcggcata tccatggtgt ctgctgcgcg tgaaaaacta
     2041 ttggtgtcga cgactcttgt aaacacctgc atagcttgta gccggtccat ttttctctca
     2101 ccgtcagtgc tttgcagcgt ccggaataag gatgccgctc agacaggaat gggcagtttc
     2161 aatcgcgatt gttcggtgcg accgaattgt gttgccggat tataggcatt tatttcaaat
     2221 gtcgttgccc ccagaattcg ttccatcgca actcgggtgg gatggcgcgg acgcgctgaa
     2281 aataaccatg gcatcaacgc tggatctggg cctctgcata gaggatgttc gaatcgcggg
     2341 acatgcgcaa cccataacct tgcgcagtta tcgccccgcc tcggacggca ccgtcctgcc
     2401 ggttgtgctc tattttcatg gcggcggctt tgtgcgcggc acgctggatg atgccgacgt
     2461 cacggccagc accattgccc gggatacggc cgcgtgggtg atttcggtgg gctattcact
     2521 ggcaccggct ttcccgtttc ctgcggctcc cgaggatgct taccgggcgg cgcaatgggc
     2581 ggtagcgaac gctcgtgcgc aacgggcgga tgcaaaccgc atcggggtcg cggggcacga
     2641 tgcgggcggc aacctggcca cgtgtctcgc ggcaatagcg cgggatcgcg gcgacatcgt
     2701 gatcctggcg caagcgctgc tcgcgccgtt gctggaccca agcatgacgc gcatggccga
     2761 cgagaacaag gtgcgttcgc cggacatctg catggcggag tgcgcgcagt gttatcgcgc
     2821 gtatctgccg aatgcttcac aacggcttca tccgtatgcg gcgccgctgg aatcgcggcg
     2881 tcttgccggt ctgccgccgg cgttgatcgc gagcgcccag catgacctgc tgcatatcga
     2941 ggcagagaaa tatgcgggcg aactgatcgc cgcgggcgta ccgacggaag tcacgcggca
     3001 cgtcaatgca tcgcataacg cgcttgcagc ggacccggcc gcactcgccg acgtggtggc
     3061 gttcttcaag aaacggctgc gtgcgcggac cgttgcgccg ctcggcgaca cactaaaaat
     3121 tcaaacaatc tcaacgactt aatcggagca acgcatgtcc atcactcgca aacgtcttac
     3181 cgtcgcgcta ggcgccgcgc tggtcgtcgc aggcatcgga acattcactg ccatgcatgg
     3241 tttcggccac ggcgatctgc cggtgaacgg tgcagaagcc gccgtcaagc cgtcggcgcc
     3301 cgctatggaa gtggatgtcg ccacggtggt ctcgaagacc atcaccgact accagaacta
     3361 ttcgggccgc ctggaagcgg tcgataaggt cgagatccgt ccgctcgtgc cggggactat
     3421 cgtcgcggtg catttcgccg acggcgcgct ggtgaagaag ggcgatccgc tcttcacgat
     3481 cgacccgcgg ccgtacgtgg cgcaagtcga tcaagccgcg gcgcaactcg cggcggcgca
     3541 agctcgcaac ggttatacgt cgaccgatgc cgcgcgtgcg gagcgtttgc tggcggacaa
     3601 cgcgattgcc aagcgtgatt acgacgaaaa gcagaacgct tcgcacgaag ccgcggcgaa
     3661 cctgaaggct gcgcaagcgg cgctcgagac ggcgaagatc aacctgacgt acacgcagat
     3721 cgtcgcgccc gtgtcgggcc gcgtgtcgcg tgctgagatg acggtgggca acatcgtgtc
     3781 gacgggttcc agcgcgccgc tgctgaccac gctggtgtcg gtgtcgccca tctatgcgtc
     3841 gttcgatgtc gatgaacaga cctacctgcg ctacctgagc cgcgactcgc gtgcaagcgt
     3901 gccggtctcg cttggtctcg cgaatgaaga tggtttctcg cgtgaaggca aggtcgcgtc
     3961 cgtcgataac cagctcgata cgggctcggg aacgatacgc gtgcgggcac gtttcgataa
     4021 c
//
LOCUS       DATGBK010001094         1721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_221688, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001094 DATGBK010000000
VERSION     DATGBK010001094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221688"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..547)
                     /locus_tag="VKJ77_15270"
     CDS             complement(<1..547)
                     /locus_tag="VKJ77_15270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC46677.1"
                     /translation="MTGHTSAKGTILVTGGAGFIGSHTCVELMNAGYGVVVIDNLVNS
                     NAQALKRVEQITGKTLAFYEADVRDETTLARIFDEHAITGAIHFAALKSVGESVAKPI
                     EYYRNNMDSLLVLLDTMRTRDVKKIVFSSSATVYGVPKSVPIDESFPLSATNPYGQSK
                     LIAEQVLRDLEISDAAWRIATL"
     gene            complement(571..1695)
                     /locus_tag="VKJ77_15275"
     CDS             complement(571..1695)
                     /locus_tag="VKJ77_15275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004550082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC46678.1"
                     /translation="MALVCNTAWAIYTYRRGLLRMLIERGVDVSVIAPRDRTFAPLEE
                     MGCRCVELPVASKGTNPRDDLKTLAALYREYRATRPHMVFHYTIKPNIYGSIAAKLAG
                     VPSIAVTTGLGYVFIQKSRTASVAKQLYRFAFRFPREVWFLNQDDRQAFIDQDLLVHP
                     ERARLLHGEGVDLGDYAYQPLPRANPQTEGFFFVLIGRLLWDKGVAEYVDAARRLRQK
                     YPYARFQLLGPVGVDNPSAITLDEVQAWQREGVIDYLGEAQDVRAFIGNADCVVLPSY
                     REGVPRTLMEASAMGRPIVATDVPGCREVVENGVTGLLCEVKSADSLAQSMEQMLLLD
                     HASRTEMGVAGRAKVAREFDENGVVERYKGTIRAVTGVSL"
BASE COUNT          331 a          526 c          517 g          347 t
ORIGIN      
        1 gcagcgtggc gatgcgccat gctgcatcgg agatttccag atcgcgcaag acctgctccg
       61 cgatcagctt cgattgcccg taggggttcg ttgccgacag cggaaacgac tcgtcgatag
      121 gcacgctttt cggcacgcca tacaccgtgg ccgacgagct gaagacgatt ttcttcacat
      181 cgcgcgtgcg catggtgtcg agcagcacga gcaggctgtc catgttgttg cggtaatact
      241 cgatcggttt cgccaccgat tcgcccacgg atttcaacgc ggcgaaatga atcgcgccgg
      301 tgatcgcgtg ttcatcgaaa atgcgggcga gggtggtttc atcgcggaca tcggcttcgt
      361 agaacgcgag tgtcttgccc gtaatctgct ccacgcgttt cagcgcctga gcgttgctgt
      421 tgacgaggtt gtcgatgacg acgacgccgt aaccagcatt catcaattcg acgcaggtat
      481 gcgagccgat aaagccggcg ccgcccgtaa cgaggatcgt gcccttcgcg cttgtgtgac
      541 cagtcatgaa taacgctccc ggagggtgat ttagagtgaa acgccggtaa ccgcgcgtat
      601 tgtgccttta taacgctcga cgaccccgtt ttcgtcgaat tcgcgcgcga ccttggcgcg
      661 gcccgccacg cccatttcag tgcgcgacgc atggtccagc aaaagcatct gttccatact
      721 ttgcgcgagg ctgtcggcgc tttttacttc gcacagcaag cccgtgacgc cgttttcgac
      781 gacttctcgg cagccgggga catcggtggc gacaatcggg cgtcccattg ccgacgcctc
      841 catcaaggtc cgcggcacgc cttcacgata cgacggcagc accacgcaat ccgcattgcc
      901 gataaacgcg cggacgtctt gcgcctcgcc gagataatcg atgacgcctt cccgctgcca
      961 ggcctgcact tcgtcgagcg tgatggcgct ggggttgtcg acgcccacgg gcccgagcaa
     1021 ctgaaaccgc gcatacggat atttctggcg taggcggcgg gccgcatcga cgtattccgc
     1081 gacgccttta tcccacagca gacggccaat taaaacgaaa aaaaagcctt ccgtctgcgg
     1141 gttggcgcgc ggtagcggct gataagcgta gtcgccgaga tcgacgcctt cgccgtgcag
     1201 caggcgcgcg cgctctggat gaaccagcag gtcctggtcg atgaatgcct gccggtcgtc
     1261 ctggttcagg aaccatactt cgcgcggaaa ccggaacgca aaacggtaaa gctgcttcgc
     1321 tacactcgcc gtccggctct tctggatgaa cacataaccc agccctgtgg tgacagctat
     1381 ggacgggacg cccgcgagtt tcgccgcgat cgaaccgtag atgttcggtt tgatcgtgta
     1441 gtgaaacacc atgtgcggcc gggttgcgcg atattcgcga tagagcgcgg ccagcgtctt
     1501 caggtcatcg cggggattgg tgcctttcga cgctaccggc agctccacgc atcggcagcc
     1561 catttcctcg agcggtgcga aagtccggtc gcgcggcgcg atcacggaaa cgtccacgcc
     1621 gcgttctatc agcatccgca gcaagccgcg ccgataggtg tagatcgccc acgccgtgtt
     1681 gcagacgagg gcaatgcgaa ggcgggattt ctctgcgttc a
//
LOCUS       DATGBK010001095         2162 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_221696, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001095 DATGBK010000000
VERSION     DATGBK010001095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221696"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..699
                     /locus_tag="VKJ77_15280"
     CDS             <1..699
                     /locus_tag="VKJ77_15280"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46679.1"
                     /translation="VISGNVSVGLATYSTTSILSTALLKSVRRDYPDVNLFLNDNFGL
                     VLSEMVMTGRMDLAIIYASGPIKGVTLQPLLMEELFLIAPPHAELPPDVDGAIPVSAL
                     GGVDLLLPGPTHFLRKLIDTAFTHAGIKPRVVAEIESAATLRDAIEAGLGATILPWAL
                     TSTFVGAERPLTRRLSGPTIRATVSLCVSDHQPMSDQAAAVRDTLSQLVKELVASQRL
                     IGVSTPDESGVPVA"
     gene            complement(730..1458)
                     /locus_tag="VKJ77_15285"
     CDS             complement(730..1458)
                     /locus_tag="VKJ77_15285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HMC46680.1"
                     /translation="MSASLKQRLASGASVLMVNPNHVSSSLAEKLTRAGADSIFIDCE
                     HGAAGFEELQRMAKAARFGGGYTIVRPQSQDRSTITRCLNCGADGVMVPLVHTAENAR
                     EVVRTVRYACPDDYEDKLVIVMIESTQAVENLDEILEVEGIDVFFVGPGDLSQSMGYS
                     PRVAPGARRPQPVLDLVDKTLGRIRRAGKFAGTLVVREDVGHLVEAGAQLLYYHADPF
                     VNDGVKVMLSLSAPPATRSERASA"
     gene            complement(1455..>2162)
                     /locus_tag="VKJ77_15290"
     CDS             complement(1455..>2162)
                     /locus_tag="VKJ77_15290"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC46681.1"
                     /translation="GRRQDALAKVVAEIEAAGGNAWARQVDLEQRGEMIDLVHWVEAE
                     VGPVGILVNNAGASSRVRNIRWIDEDDWNATLSVNLTAVYVLIQAVLPGMLAAGGGTV
                     ITVSSLAAVRPSLLGGAPYGAAKAAVRNLMTYLHATFRNNNIRATTILPGEVNTPIMD
                     TRVRPPSTEERAAMVSPDDVARAILLCCTLPARTTIEELVISPTLQRDQGPDTEISRW
                     LGAPDGVAPGTTEGNKS"
BASE COUNT          378 a          718 c          651 g          415 t
ORIGIN      
        1 gtcatttcgg ggaatgtgag cgtcgggctc gcgacctaca gcacaacgtc gattctttct
       61 accgcgctct tgaagagcgt caggcgcgac tatcccgatg tcaacctgtt cctgaacgac
      121 aatttcgggc tggtgttgag cgagatggtg atgaccgggc gcatggatct cgcgattatc
      181 tacgcatcgg gaccgatcaa gggcgtgacc ctgcaacccc tgctcatgga ggaattgttc
      241 ctgatcgcgc cgccgcacgc ggaattgccc cctgatgtcg atggcgctat cccggtgtcc
      301 gcgctcggcg gcgtcgacct gctcctgccc ggcccaacgc acttcttgcg caagttgatc
      361 gacaccgctt tcacccatgc gggcatcaag ccgcgagtgg tcgccgagat cgagtccgcg
      421 gccaccctgc gcgatgcgat cgaggcaggc ctcggcgcca ccatcttgcc gtgggcgcta
      481 accagtacgt tcgtcggcgc cgagcgcccg ctgacgcgtc gattgagtgg tcccaccatt
      541 cgtgccaccg tctcgctttg cgtttccgat catcagccga tgtcggacca ggccgcagcg
      601 gtacgtgaca cgctaagcca actggtgaag gaactggttg cgtcgcagcg gctgatcggt
      661 gtgagtacgc ccgacgaatc gggcgtaccg gttgcctgac gccgacgcct cgcgataact
      721 cgcgacaact caggcagatg ccctttcgct gcgtgtcgcc gggggcgcgg acaggctgag
      781 catcactttc acgccatcgt tcacgaacgg gtcggcatga tagtagagaa gctgcgcgcc
      841 cgcttcgacg agatgcccga catcctctct gaccacaagc gtaccggcga acttgccggc
      901 acgtcggatg cgtcccaggg tcttgtccac gagatcgagc acgggctgcg gacgacgcgc
      961 gccaggagcg acgcgcggcg aataccccat cgactgcgac agatcgccag gtccgacaaa
     1021 gaacacgtcg atgccctcga cctcaagaat ttcatcgaga ttctcaacgg cctgcgtcga
     1081 ttcgatcatc acgatgacaa gcttgtcctc gtagtcatcc ggacacgcgt atcgcacggt
     1141 cctgacgacc tcgcgtgcgt tctccgcggt atgcacgagc ggcaccatca caccgtccgc
     1201 accacagttc agacatcgcg tgatagtcga cctgtcctgg ctttgggggc gcacaatggt
     1261 gtagccgccg ccgaagcgcg ccgccttggc catcctctgc agctcctcga aacccgctgc
     1321 accatgttca cagtcaatga aaatcgagtc ggcgccggcg cgcgtgagct tctcggccag
     1381 gcttgacgag acatgattcg gattcaccat cagcacggac gcgccgctcg cgagtcgttg
     1441 tttcagcgaa gcactcatga tttatttcct tcggttgttc ccggtgcaac gccatccggg
     1501 gcgccgagcc agcggctgat ttcggtgtcg ggtccctggt cgcgttgcag cgtcgggcta
     1561 atgaccagtt cctcgatcgt ggtacgcgcg ggcaacgtgc agcacagcag gatcgcccgc
     1621 gccacgtcgt cgggacttac catcgccgct cgctcctcgg tactcggtgg ccggacgcgc
     1681 gtgtccatga tcggggtgtt gacctcgccg gggaggatcg tcgttgcgcg gatgttgttg
     1741 ttgcggaaag tggcgtgcag gtaggtcatc aggttgcgta cggcggcctt cgccgcgccg
     1801 tagggcgcac caccgagcaa gctcggacgc accgcagcaa gcgacgacac cgtgatgacc
     1861 gtgccgccac ccgccgcgag catgcccggc agcactgcct gaatcagcac atagactgcg
     1921 gtcaggttca ccgacagtgt cgcgttccag tcgtcctcat cgatccagcg aatattgcgc
     1981 acgcggctgg acgcgccggc gttattgaca aggatgccaa ccggcccgac ctccgcctcg
     2041 acccagtgca ccaggtcgat catttctcca cgttgctcca gatctacctg acgcgcccag
     2101 gcgttgccgc ccgccgcctc gatctcggct acgacctttg caagcgcgtc ctgtctgcgg
     2161 cc
//
LOCUS       DATGBK010001096         2191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_36724, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001096 DATGBK010000000
VERSION     DATGBK010001096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36724"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..263)
                     /locus_tag="VKJ77_15295"
     CDS             complement(42..263)
                     /locus_tag="VKJ77_15295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2866 domain-containing protein"
                     /protein_id="HMC46682.1"
                     /translation="MRGCRVSAPIQQPWGGGCRIVEWIDAEGQISRRVVAEDVTEDEV
                     VATIRRHVTGRKHVLVDDEGMPRQTLPRR"
     gene            complement(477..1865)
                     /gene="radA"
                     /locus_tag="VKJ77_15300"
     CDS             complement(477..1865)
                     /gene="radA"
                     /locus_tag="VKJ77_15300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006053000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HMC46683.1"
                     /translation="MAKVAKVKTLYVCTECGGQAPKWQGQCPACGAWNTLVESVAESP
                     SAHRFQALAKTSPVQRLSEIEASDVPRFTTGIGEFDRVLGGGLVAGGVVLIGGDPGIG
                     KSTLLLQSLAEIARERPALYISGEESGAQIALRAQRLGLLGDSGNAAPDLRLLAEIQL
                     ERIQATIDTERPEVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQTCTTIII
                     VEHVTKEGNLAGPRVLEHIVDTVLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTER
                     GLRGVANPSALFLSQHEQSVPGSCVLVTQEGSRPLLVEVQALVDTAHVPNPRRLAVGL
                     EQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALP
                     KGLIVFGEVGLAGEIRPSPRGQDRLKEAAKLGFSIALIPKANAPKQPIDGLEVIAVDR
                     IDEAIDRVRSLA"
     gene            complement(1939..>2191)
                     /locus_tag="VKJ77_15305"
     CDS             complement(1939..>2191)
                     /locus_tag="VKJ77_15305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017331722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alanine racemase C-terminal domain-containing
                     protein"
                     /protein_id="HMC46684.1"
                     /translation="DGYPRVAPEGTPVVVDGVVTRIVGRVSMDMLTVDLTPVPTAGIG
                     TPVELWGAKLPIDDVAAACGTIGYELMCAVAPRVPMRAE"
BASE COUNT          427 a          741 c          603 g          420 t
ORIGIN      
        1 aactggaaca gatcggctga aagcccgctg atctgcccgg tctagcgccg gggcagcgtc
       61 tgccgcggca ttccttcgtc gtcgacgagt acgtgtttgc gtcccgtcac gtggcgccga
      121 atggtcgcta cgacctcatc ttcggtcacg tcttcggcga ctacacggcg tgatatctgc
      181 ccctcggcgt cgatccactc gacgatccgg cacccgccgc cccatggctg ctggatgggt
      241 gccgacactc ggcagccgcg catatgaaaa gaagggcgag acaaagtttg atctgcgtgt
      301 ttcaaggcgt ggtccttttt ccttttccgc tcgtatccgg gtttgtcgcg atacaaggat
      361 agaaaaagga cgccccgcgt gggttacatg aacctcgcag ttttttacac gacattacta
      421 agggaccgat caccgacgct ctcgcaactt ggcctcaagc gcgctgctga ggagcctcag
      481 gccagtgacc gtacgcgatc gatcgcctcg tcaatccgat cgactgcgat cacttccagc
      541 ccgtcgatag gttgcttcgg cgcattcgcc tttggaatca gcgcgattga aaagcccagt
      601 ttcgcggcct ccttcaaacg atcctgaccg cgcggcgacg gtctgatttc acctgccagc
      661 cctacttcgc cgaacacgat cagacccttg ggcagcgcct tgttacgcat cgacgaatga
      721 atcgcgagca gtacggccag atcggccgcg ggttccgtga tcttcacgcc gcccaccgcg
      781 ttcaggaata catcctgatc gaagcacgca atgcccgcat gcctatgcaa cacggccagc
      841 agcaatgcga gccggttctg ctccagcccc acggcgagac ggcgcggatt cgggacatgc
      901 gcggtatcga cgagcgcctg cacttccacc aataacggcc gcgacccttc ctgcgtcacc
      961 aacacgcacg aacctggcac gctctgctca tgctgcgata aaaatagcgc cgatggattc
     1021 gccacgcccc gcaaaccgcg ctcggtcatc gcgaatacgc caagttcgtt caccgcgccg
     1081 aagcggttct tgaacgcgcg cacgagccgg aaagatgagt gggtgtcgcc ttcgaagtac
     1141 aacaccgtgt ccacgatgtg ttcgagcaca cgcggcccag cgagattgcc ttccttcgtc
     1201 acgtgctcga cgatgatgat ggtcgtgcac gtctgcttcg cgatccgcgt gagttgcgcc
     1261 gcgcattcac gcacctgagc gaccgatccc ggcgcagagg tcagcgcttc agaatagaca
     1321 gtctggattg aatcgatgac ggcaacttcc ggccgctctg tatcgatagt tgcctggatg
     1381 cgctccagct ggatttccgc cagtaagcgc aaatcaggcg ctgcattacc ggaatcgccg
     1441 agcaggccga gccgctgcgc gcgcaacgcg atctgcgcgc cggactcttc gccactgata
     1501 taaagcgcgg gccgctcacg ggcgatttcc gccagcgatt gcagcaacag cgtggatttt
     1561 ccgatgcccg ggtcgccgcc gatcagcacc acgccgccgg ccaccaggcc gccgcccagc
     1621 acccggtcga attcaccaat acccgtggta aagcgcggca cgtccgacgc ttcgatctcg
     1681 gacaagcgct gcaccggaga ggtcttcgcg agtgcctgaa agcgatgcgc cgacggcgat
     1741 tccgccaccg actcgaccag tgtgttccac gctccgcatg cgggacattg accttgccat
     1801 ttcggcgcct ggccgccgca ttcggtacat acgtacagtg tcttgacctt cgctactttc
     1861 gccactcgcc ttcctgaatt ccgtcgttat tgcgtcgtta ttgcgtcgtt acacatccaa
     1921 acaaccagag cgaacgctct attccgcccg catcggcacg cgcggcgcca ctgcgcacat
     1981 caactcataa ccgatcgtgc cgcacgcagc ggccacgtcg tcgataggca gcttcgcacc
     2041 ccacaattcc acgggcgtgc caattccggc agtcggcacc ggggtcaggt cgaccgtcag
     2101 catgtccatg gacacacggc cgacaatccg cgtcactacg ccatcgacga caaccggtgt
     2161 gccttcaggc gccactcgag gataaccgtc c
//
LOCUS       DATGBK010001097         2542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_128590, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001097 DATGBK010000000
VERSION     DATGBK010001097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128590"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(165..974)
                     /gene="iolB"
                     /locus_tag="VKJ77_15310"
     CDS             complement(165..974)
                     /gene="iolB"
                     /locus_tag="VKJ77_15310"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016861 - intramolecular oxidoreductase
                     activity, interconverting aldoses and ketoses [Evidence
                     IEA];
                     GO_process: GO:0019310 - inositol catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HMC46685.1"
                     /translation="MSLLVKASREGQTIARVTPETALWKHVGFAAYRLETGDIVHVHE
                     AQREVCIVVLSGTVSIEAGEHKWEKLGSRDSVFEDTAPYAVYLPPKLAATIRADRNAE
                     VGVASAPATGKYPARLIEPSQMTRSTRGKGANTRYVCDILPQTEPAEGLLVVEVRTPG
                     GHASSYPPHKHDRDNVPIESSLEETYYHRLNPPQGFAFQRVYTDERDLDETMAVEDHD
                     VVMVPRGYHPVVVPYGYDNYYLNVMAGDKRTWHFKNDPKHEWIVERDSKAS"
     gene            complement(971..1876)
                     /gene="iolE"
                     /locus_tag="VKJ77_15315"
     CDS             complement(971..1876)
                     /gene="iolE"
                     /locus_tag="VKJ77_15315"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050114 - myo-inosose-2 dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0019310 - inositol catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HMC46686.1"
                     /translation="MSTFDVRIGINPLSWMNDDLPSLGGETPLSVALTEGKQIGYEGF
                     ELGNKFPREPEALKTLLAGYDLALVSGWYSGRLAERSAEDEIAAVGPHLDLLAKNGAT
                     VMVYGEVSDSIQGAPRPLYQRPRFFSDDRWNEYATRLNTFAEYTLSRGVRVAYHHHMG
                     AYVETPADIDRLMSLTNEAVGLLFDAGHVTFAGGDPLTVLNKHIARVCHVHCKDVRPE
                     IIKLARNRNWSFLEAVINGAFTVPGDGTVDFPSIIARLKQHGYRGWLVVEAEQDPVIA
                     TSYAYAEKGYKTLRALVDQNLQEAA"
     gene            complement(1880..>2542)
                     /locus_tag="VKJ77_15320"
     CDS             complement(1880..>2542)
                     /locus_tag="VKJ77_15320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HMC46687.1"
                     /translation="QRSSAQSAAHDVVVCAAGTLPADLQKLWRTSTPGGYHVEYGYSC
                     MGYEVAGGLGAKLARPASEVIVIVGDGSYLMMNSELATSVMLGAKLIVVLLDNRGYGC
                     INRLQQACGGAPFNNLIDDCRQGPEGAPAIDFAMHARSLGASAEHVANIDELEAAMQR
                     ARASTRSYLISIDTDPARPTEEGGWWWEVAVPEVSSREAVRSARANYEHEITARSKRT
                     KE"
BASE COUNT          484 a          779 c          733 g          546 t
ORIGIN      
        1 aggcgtggcg attctattga tcgaacaacg catgaggatt gcgcgcgctc tggcgacgcg
       61 catcgccgtg atgggtcacg gcaggattgt ctttgatgac acgcccgtcg cacttgctgc
      121 gaacgagcgt gtgattaacg aatggctttc tatcggcaat taagtcacga agccttgcta
      181 tccctctcca cgatccattc gtgcttcgga tcgttcttga agtgccaggt gcgtttgtcg
      241 ccggccatca cgttcaggta gtagttgtcg tagccatacg gcaccacaac ggggtgataa
      301 ccacgcggca ccatgacgac gtcatgatct tcaacggcca tggtttcatc gagatcgcgc
      361 tcatcggtat acacgcgctg gaacgcaaat ccttgcggcg ggttcagccg atgataataa
      421 gtctcctcaa gcgaactctc gatgggcaca ttgtccctgt cgtgcttatg cggcggatag
      481 cttgaagcgt gaccgccagg cgtccgtacc tcgaccacaa gcaaaccttc tgcaggttcg
      541 gtttgcggga gaatatcgca gacatagcgc gtattcgcgc ctttgccgcg cgttgagcgt
      601 gtcatctgcg aaggctcgat caaccgcgcc ggatacttgc ccgtagcggg cgcacttgcc
      661 acaccgactt ccgcgttgcg atctgctcgt atcgtcgcgg cgagcttggg cggtagataa
      721 accgcgtagg gcgcagtgtc ctcgaacacg ctgtcgcgag agccgagctt ctcccactta
      781 tgctcaccgg cttctatgct caccgtcccc gacagcacga cgatgcacac ttcacgttgc
      841 gcctcatgca catgcacgat gtcgccggtt tccagccgat aagcggcgaa gccaacgtgt
      901 ttccataaag cagtttcggg tgtgacgcgc gcaatggtct ggccttcgcg cgatgccttg
      961 acgagcaggc tcatgctgcc tcctgaaggt tttgatcgac gagcgcgcgc agcgtcttgt
     1021 agcctttttc ggcgtacgca tagctggtgg caatgacggg atcctgctcc gcttcaacca
     1081 caagccagcc gcgataacca tgctgcttca atcgagcgat gatcgatgga aagtccaccg
     1141 tgccgtcacc cgggacggtg aacgcgccgt tgatcaccgc ttccaggaag ctccagttcc
     1201 ggttccgggc aagcttaatg atttctggcc gcacatcctt gcaatgcaca tggcaaacgc
     1261 gcgcgatgtg cttgttgaga accgtcagtg gatcaccacc cgcgaaagtg acgtgaccgg
     1321 cgtcgaagag caggcccacg gcttcgttgg tgaggctcat caggcgatcg atgtccgcag
     1381 gtgtttccac atacgcaccc atgtgatggt gataagccac ccggacgccg cgcgagagcg
     1441 tgtattcggc aaaggtgttc aggcgggttg cgtactcgtt ccagcgatca tcggagaaaa
     1501 aacgcggtcg ctgatacagc ggtcgcggtg ccccctggat agagtcggac acttcgccgt
     1561 agaccatgac cgttgcgccg ttctttgcaa gcaggtcgag atgcggacca acggccgcga
     1621 tctcgtcctc ggcgctgcgt tcggcgagcc gtccggaata ccagccggag accagcgcga
     1681 ggtcgtatcc ggcgagcagc gtttttaacg cttccggctc gcgcgggaat ttgttgccca
     1741 gttcaaaacc ttcgtagccg atctgcttgc cttcggtcag ggccacgctt aacggcgtct
     1801 caccgccgag cgagggcagg tcgtcgttca tccatgacag cggattgatg ccgatccgta
     1861 catcgaacgt gctcatcgct tattccttcg tgcgcttcga acgcgccgta atttcatgtt
     1921 catagtttgc gcgcgccgag cgcaccgctt ctcgcgacga cacttcaggc accgcgactt
     1981 cccaccacca accgccttct tctgtaggac gcgccggatc ggtgtcgatg ctgatcagat
     2041 acgagcgtgt ggaggcacgt gcgcgttgca ttgccgcttc cagttcatcg atattcgcaa
     2101 catgctcagc gctcgcgccg agcgaccgtg catgcatcgc gaagtcgata gcgggtgcgc
     2161 cttccggacc ctggcggcaa tcgtcgatca ggttgttgaa cggcgcgccg ccgcatgctt
     2221 gctgcaagcg gttgatacag ccgtatccgc ggttgtcgag caacaccacg atcaatttgg
     2281 ccccgagcat caccgacgta gcgagctcgc tgttcatcat cagatagcta ccatcgccga
     2341 ctatcacgat cacttcgctt gccggccgcg cgagtttcgc gccgagaccg ccggcgactt
     2401 catagcccat gcacgagtag ccgtattcga cgtgataacc acccggtgtg ctcgtgcgcc
     2461 agagcttttg cagatcggcc ggcagggttc ctgcggcaca taccaccacg tcatgcgctg
     2521 ccgactgagc gctggaacgc tg
//
LOCUS       DATGBK010001098         1578 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_36787, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001098 DATGBK010000000
VERSION     DATGBK010001098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36787"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..1202
                     /locus_tag="VKJ77_15325"
     CDS             3..1202
                     /locus_tag="VKJ77_15325"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011353151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HMC46688.1"
                     /translation="MSKQVQDAYIVAASRTPIGKAPRGIFKNTRPDELLVHAIRSAVA
                     QVPGLDTKLIEDAIIGCAIPEGEQGLNVARIGALLAGLPNSVGGVTVNRFCASGVTAL
                     AMAADRIRVGESDVMIAGGCESMSMVPMMGNKPSLSPHIFDRDENIGIAYGMGLTAER
                     VAERWKISREAQDAFSVESHRRALEAQRTGEFNDEIAAFTLNERFPELATGEIRVNAR
                     EIKNDEGPREGTTMEGLAKLRPVFAAKGSVTAGNSSQTSDGAGALIVVSEKILKQFNL
                     TPLARFVSFAVRGVPPEIMGIGPKEAIPAALKAAGLTQDDIDWIELNEAFAAQSLAVI
                     QDLGLDPSKINPLGGAIALGHPLGATGAIRAATVVHGLRRRNLKYGMVTMCVGTGMGA
                     AGIIERM"
     gene            1281..>1578
                     /locus_tag="VKJ77_15330"
     CDS             1281..>1578
                     /locus_tag="VKJ77_15330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HMC46689.1"
                     /translation="MDIITEHVDGVLSITINRPARKNALTAAMYQTMADAFFDAENDP
                     AVRVVLIRAVGDTFSAGNDIEDFMKAPPASQDAPVFQFLRRISTAQKPVVAAVAG"
BASE COUNT          307 a          443 c          543 g          285 t
ORIGIN      
        1 aaatgagcaa acaagtgcag gacgcatata ttgtcgccgc gagccggacg cctatcggca
       61 aggcgccgcg tggcatcttc aagaacacgc ggcccgacga gcttttggtc cacgcgatcc
      121 gttcagccgt ggcgcaagtg cccggtctgg atacgaagct gatcgaggac gcgatcatcg
      181 gttgcgcgat tcccgaaggc gagcaaggcc tgaacgtggc gcgtatcggc gcattgttgg
      241 ctggcttgcc gaactcggtg ggcggcgtga ccgtgaaccg gttttgcgca tcgggcgtga
      301 ccgcgttggc gatggcggcc gaccggattc gcgtcggcga atcggatgtg atgattgcag
      361 gcgggtgcga gtcgatgagc atggtgccca tgatgggcaa caagccgtcg ctgtcgccgc
      421 atatcttcga tcgtgatgag aacatcggca ttgcttacgg tatgggcttg accgccgaac
      481 gcgtggccga gcgctggaag attagccgcg aagcgcagga cgcgttttcg gtggaatcgc
      541 atcggcgtgc actggaagca caacgcaccg gcgagttcaa cgatgaaatc gcggcgttca
      601 cgctgaacga acgtttcccg gagctggcca cgggcgagat tcgcgtcaac gctcgcgaga
      661 tcaagaacga cgaaggcccg cgcgagggca cgaccatgga ggggctcgcc aaactgcgtc
      721 ccgtcttcgc tgcgaagggt tcggtcacgg cgggcaatag ctcgcagacg tcggacggcg
      781 cgggcgcgtt gatcgtggtc agcgagaaga tcctgaagca attcaacctg acgccgctcg
      841 cgcgttttgt gagctttgca gtgcgtggcg tgccgccgga aatcatgggc atcggcccga
      901 aggaagcaat tcctgcagcg ttgaaagcgg cgggtttgac gcaggacgat atcgactgga
      961 ttgaactgaa cgaagcgttc gcggcgcaat cgctggcggt gattcaggac ctcggactcg
     1021 atccgtcgaa gatcaatccg ctcggcggcg cgattgcgct gggtcatccg ctgggtgcga
     1081 cgggcgctat tcgtgccgcg acggtcgtgc acggcttgcg ccggcgcaac ctgaagtacg
     1141 gcatggtgac catgtgcgtg ggaacgggca tgggcgcggc gggcattatc gaacggatgt
     1201 gagcgtggtt cgctaaaacg caaaacgacg gttcgcgcac catccggtcc gcgagccgtt
     1261 tcttcattca ggagacgaaa atggacatca tcaccgaaca cgtcgacggc gtgctgagca
     1321 tcactatcaa ccgtccggcc cgcaagaacg cgctgacggc cgcgatgtat caaaccatgg
     1381 ccgatgcttt cttcgatgct gagaatgatc cggccgtgcg cgtggtgctg attcgcgcag
     1441 tgggcgatac gttcagcgcg ggcaacgata tcgaggactt catgaaggcg ccgcctgcca
     1501 gccaggacgc gcctgtgttc cagttcctgc gccgcatcag taccgcgcag aagccggtgg
     1561 tggcggcggt ggcgggcg
//
LOCUS       DATGBK010001099         2094 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_151598, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001099 DATGBK010000000
VERSION     DATGBK010001099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151598"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..390
                     /locus_tag="VKJ77_15335"
     CDS             <1..390
                     /locus_tag="VKJ77_15335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46690.1"
                     /translation="ESDHLVEVSNNLCGEYQTRVCCVLGVRGTLVRKDRATAQALTQA
                     LLDATEWTANHPADAAAIFAQYAPQADVGQLTAMLKSHTDHHHPIGDAFKKEIALYAD
                     DLKTVGVLNSGTDSNHFANRVFSDVLV"
     gene            complement(480..1955)
                     /locus_tag="VKJ77_15340"
     CDS             complement(480..1955)
                     /locus_tag="VKJ77_15340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019655155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HMC46691.1"
                     /translation="MTTAASSPVPQTLLEVPLARGPGAAPMQRQLHHRFKEAILGGHL
                     APGSRLPGSRSLAEALAISRNTVTAAYDLLAAEGYVQPDRQGTRVATLSRPAPPQGRR
                     NAPAAPATAQRLTRIQAAAPPAEGNAALRPGVPALSHFPLAAWRRAIDRAIRHAGPSA
                     LGYGDPPGEPALRASIARHLGIARGVRCEPAQVVITEGAQEALSLCVRLLTNAGDTAW
                     IEDPGYRGAKAAMRAGDLRMVPMRVDADGLIADESDWQSQPPRLIYTTPSHQYPAGAV
                     LTVARRLELIAKAQQHGAWIIEDDYDSEFRHAGEPIGAMQGLVTQAPVLYVGTFSKTM
                     FPSLRLGFLVLPATLVEQMRAPLDDMLRGGHRYEQLALAEFIESGQFSRHLGRMRRLY
                     RDRQHALREALTRHMPVTHVIEGGYCGLHLTVRLPACYPDREIADAARRHGLAPTPLS
                     SFALQPMPEDNGLVLGYGNTSAELFEPLVRLLARLVRGVKV"
     gene            complement(1912..>2094)
                     /locus_tag="VKJ77_15345"
     CDS             complement(1912..>2094)
                     /locus_tag="VKJ77_15345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46692.1"
                     /translation="HVLTYAHHGTLKSATFPIFHGSTLVAPTGSVHFPIPFIALIPLD
                     SAHDNRRFIARAANPA"
BASE COUNT          407 a          659 c          658 g          370 t
ORIGIN      
        1 gaatcggatc atctggttga ggtttctaac aacctgtgcg gcgagtacca gacgcgcgtg
       61 tgctgcgtgc tcggcgtgcg tgggacgctg gtgaggaagg atcgtgcgac agcgcaggca
      121 ttgacacagg ccttgctcga cgcaacggaa tggacggcga accatcccgc ggatgcggcg
      181 gctatctttg cgcaatacgc accgcaagcg gatgtggggc aactgacggc catgctcaag
      241 agtcacacgg atcatcatca tccgatcggc gacgcgttca agaaggaaat cgcgctgtat
      301 gcggacgact tgaagacagt gggggtgttg aatagcggca cggattcgaa ccacttcgct
      361 aatcgggtgt tctcggatgt gctggtctga agcgtgcttg accatgcctt ttccagccga
      421 gtgttctcgg atgtgctggt ctgaagcgtg cttgaccatg ccttttccag ccggtctttt
      481 taaaccttca ccccacgaac cagcctagcc agaagccgga ccaaaggctc gaacaactcc
      541 gccgatgtat tcccataccc gagcacgagc ccgttgtcct cgggcatggg ctgcagcgca
      601 aaactggata gcggcgtggg ggctaagcca tgccgccggg ctgcatcggc gatctcgcgg
      661 tccgggtagc acgccggcaa ccgtaccgtc aggtgcaagc cgcaatatcc gccttcaatg
      721 acatgcgtca ccggcatatg ccgggtcagc gcttctctca acgcatgctg ccggtcgcga
      781 tacaaacgcc gcatgcggcc cagatgccgg ctgaactgac cgctctcaat gaactcggca
      841 agcgcgagct gttcatagcg gtgaccgcct cgcagcatgt cgtccagggg ggcgcgcatc
      901 tgctctacca gcgtcgccgg caagacaaga aaccccaggc gcaacgacgg aaacatcgtt
      961 ttgctgaacg tccccacata caacacgggc gcttgcgtca ccaaaccctg catcgcgccg
     1021 ataggctcac ccgcgtgacg gaattcgctg tcgtagtcgt cctcgatgat ccatgcgcca
     1081 tgctgctgag ccttagcgat caactctaaa cgccgcgcga cagtcagcac cgcacccgcg
     1141 ggatattgat gcgacggcgt ggtgtagatc agccgtggcg gctgcgactg ccagtcgctt
     1201 tcatcggcga tgagaccatc ggcgtcaacc cgcatcggca ccatgcgcag gtcgcccgct
     1261 cgcatcgccg ccttcgctcc gcgataaccc gggtcttcga tccacgccgt atcgccggca
     1321 ttggtcagca agcgaacaca tagcgaaagc gcttcttgcg caccctcggt aatcacgact
     1381 tgagccggtt cacatcgcac cccccgggct atgcccagat gccgggctat cgacgcacgc
     1441 aatgccggct cacccggagg atcgccgtaa ccaagagccg atggccccgc gtggcgaatg
     1501 gcacggtcga tcgcacggcg ccacgcagcc agtgggaaat gagacaaggc gggaaccccc
     1561 gggcgcaatg ccgcgtttcc ctcggccggc ggcgcggcgg cctgaatgcg cgtcagccgc
     1621 tgcgcagtgg ccggcgccgc cggcgcattg cgcctgccct gcggtggcgc cggacgcgac
     1681 aacgtcgcta cccgcgtgcc ctgccggtca ggttgcacat acccctctgc cgccagcagg
     1741 tcgtacgcgg cggttaccgt gttacgggag atggctagcg cctcggccag cgagcgtgag
     1801 cccggcaggc ggcttcctgg cgcgaggtgg ccgccgagga tggcttcctt gaagcgatga
     1861 tgcaactgtc gctgcatggg cgccgcgccg ggccctctgg caagcggcac ttcaagcagg
     1921 gtttgcggca cgggcgatga agcggcggtt gtcatgagcg gagtcaagcg gaatcagcgc
     1981 aatgaacgga atggggaaat gcacgctacc ggttggtgcc acgagcgtgg agccatgaaa
     2041 aatagggaat gtggcacttt ttaaggttcc atgatgcgcg tacgttagca catg
//
LOCUS       DATGBK010001100         2821 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_105632, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001100 DATGBK010000000
VERSION     DATGBK010001100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2821
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105632"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..776
                     /locus_tag="VKJ77_15350"
     CDS             <1..776
                     /locus_tag="VKJ77_15350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HMC46693.1"
                     /translation="TSYRYAVPVQYSIQQLRMTPANGSAQMVRRWNIDTVGKLDVTRD
                     AYSNTLHTLVLTKPHMEIHLSVTGQVETTLLDGGRLNDGPGRIPLQHYTCATALTEPD
                     AVIRELANSVPKLDSPSALIALAENIEAKVQFKAGVTEVTSTAAQALQLGNGVCQDHA
                     HIMLACCRARGLPARYVSGYIDPGDVPHAASHAWVDVWIDDGWVSVDVTHTAFASGRY
                     CRLAVARDYEAAAPVRGSRVGGKEERMSVDVSVQATADQ"
     gene            1012..1881
                     /locus_tag="VKJ77_15355"
     CDS             1012..1881
                     /locus_tag="VKJ77_15355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome-type protease"
                     /protein_id="HMC46694.1"
                     /translation="MTYCVAMRVDEGLVFLADTRTNAGVDHVSAARKMAVFEQPGDRV
                     LVLLAAGNLALTQAVMQLLSEPAPEDKTTLYNVPTMAEAARLVGDAVREVHRRDAATL
                     AEFSVDFNCSFILGGQIRGANTRLFMIYSAGNFVESSQVSPYFQIGESKYGKPIIDRV
                     VTPSTPLDEVAKCALVSMDSTLRSNLSVGLPLDLLVYEKDALSVTRFSTIDNDNQYFQ
                     MIHRTWGERLRQIFGEIPNPTWADPANVPLRARETVSNVPRVTGSDLRAEPDTSAPPF
                     QTLMQPETGRSQH"
     gene            complement(2153..>2821)
                     /locus_tag="VKJ77_15360"
     CDS             complement(2153..>2821)
                     /locus_tag="VKJ77_15360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015603832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC46695.1"
                     /translation="FEGLYGFSNGAGTTGQGQTWSGAVAYNNGPLGLAAGYYYTSNPS
                     AGRSAFTWNSPSSDSIFDSPINSGYASAHSIAIARAAGQYAIGPVTLGASYSNAKYRP
                     DGFSAFTSTQTYNIGSAFVNYQLTPAFLIGTGYTYEKASGDTGAHYNQVGIGADYTIS
                     KRTDFYALGAYQKASGTQAVFTTNAAGQTVRVDQQAQASIGSFGFAGTNTQEMVIVGI
                     RHKF"
BASE COUNT          567 a          826 c          874 g          554 t
ORIGIN      
        1 acacaagcta ccgctacgcg gtgcccgtgc agtactccat ccagcaactg cgcatgacgc
       61 ccgccaatgg gtcggcgcag atggtgcggc gctggaatat cgacacagtg ggcaagctcg
      121 acgtcacccg cgacgcctac tccaacacgc tgcatacgtt ggtgctgacg aaaccccata
      181 tggagatcca tctttccgta actggtcagg tggaaaccac attgctcgac ggcggccgcc
      241 ttaacgacgg acccgggcgg attccgctcc agcactacac atgcgcgacc gcgctgaccg
      301 agccagacgc agtgatccgc gaactcgcga actcggtgcc caagctcgat tcaccgtcgg
      361 cgctgattgc gctggcggaa aatatcgaag caaaggtgca gttcaaggcg ggtgtaaccg
      421 aggtcacgag cactgctgct caggcgctgc agctcggtaa cggcgtgtgc caggatcacg
      481 ctcacatcat gttggcgtgc tgccgcgccc ggggtctccc ggcgcgctat gtgagcggtt
      541 acatcgatcc aggcgatgtc ccgcatgccg caagccacgc gtgggtggat gtgtggattg
      601 atgacggatg ggtgtcggtg gacgttaccc acacggcgtt cgccagcggc cgctactgcc
      661 gtcttgcggt tgcgcgcgac tatgaagcgg ccgcgccggt gcgcggttca cgcgtgggcg
      721 gcaaggaaga gcgcatgagc gtggatgttt cagtgcaggc tacggccgac cagtgagtga
      781 cacgtcgcgg cgctcgcatt ccttcggcgc cgggacattc aaggcgcgcc cccatctgcc
      841 gataactact agaaggtgag gtggcgcggc ctggtttgcc gcaccttgac ctgatgacgg
      901 gaggcggcgc gttcgctggg ggactcatgc ctggcgcgat catcgcaatc agcccgatcc
      961 gggcgattac ccgattacaa tacgtatttg cttctttcag gaattggacg catgacttat
     1021 tgcgtggcaa tgcgcgtcga cgaaggactg gtgttcctcg ccgatacccg cacgaatgcc
     1081 ggggtcgacc atgtgagcgc ggcccgcaag atggcagtct tcgagcagcc cggcgaccgt
     1141 gtcctcgtgc tcctcgccgc aggtaatctc gccctgacgc aggcagtcat gcaactgctg
     1201 tcggaaccgg cgcccgaaga caaaaccacg ctgtataacg tccccaccat ggcggaagcg
     1261 gcccggttgg tgggcgatgc ggtgcgcgag gtacatcggc gagatgcagc tacgctcgcg
     1321 gaattcagcg ttgacttcaa ttgcagcttc attctcggcg gccagatccg cggggcgaat
     1381 acgcgcctgt tcatgattta ctcggcaggc aacttcgtgg agtcgtcgca ggtcagcccg
     1441 tatttccaga tcggtgaatc gaagtacggc aagccgatta tcgatcgcgt tgtcacaccg
     1501 tccacaccgc tggacgaagt tgcgaaatgc gcgctggtgt cgatggactc aacgctgcgg
     1561 tccaatttat cagtgggatt gccgctcgat ctgctcgtgt atgagaagga cgcgttgagc
     1621 gtcacgcggt tctccacgat cgacaacgac aaccagtatt tccagatgat tcatcgcacc
     1681 tggggcgaac ggctgcggca gattttcggg gagattccaa atccaacctg ggccgatccc
     1741 gccaatgtac cgctgcgggc acgcgaaacg gtatcgaacg tgccgcgcgt gacaggcagc
     1801 gacctgcgtg cagaacccga tacgtcagcg ccgccgttcc agacgttgat gcagccggaa
     1861 accgggcggt cgcaacattg agtgcggttg gatgttgcag agtatcaaaa gctcgctgtc
     1921 ggaataccgc tacgggctcg gcaagctagg taagctgaac aagagaacgg cccaatcggc
     1981 gtaagtcgat tgggccgttt ctgttttcgg atcgggcata gcgatcacgg cagctcagcg
     2041 cgctgcacat gacgcgcata aaaaacagcc atcggcgaag ccgatggctg tttttgaacc
     2101 gcagtcgaaa tcggcgcgct aaaccgtgaa acgctacgcg ccgggtccgg ctttagaact
     2161 tgtgacgaat accaacgatg accatttctt gagtgttcgt gccggcgaag ccgaacgaac
     2221 cgatcgatgc ttgtgcttgt tgatctacgc gaaccgtctg gccagcagcg ttcgtggtga
     2281 atacagcttg cgtgccgctt gctttctggt aagcgccaag tgcgtagaaa tccgtgcgct
     2341 tggagatcgt gtagtccgca ccgatgccga cctgattgta atgagcaccc gtgtcgccac
     2401 tagctttctc gtacgtgtag cccgtgccga tcaggaaagc cggcgtaagc tggtagttca
     2461 cgaatgcgct gccgatgttg tacgtctgcg tcgacgtgaa tgccgagaaa ccgtccggac
     2521 ggtactttgc attgctgtac gaagcgccga gcgttaccgg gccgatagcg tactgacctg
     2581 ctgcacgagc gatggcgatc gagtgagccg acgcgtagcc gctgttgatc gggctgtcga
     2641 agatcgaatc tgacgacggg ctgttccagg tgaaagccga acggcctgca ctcgggttgc
     2701 tcgtgtagta gtaaccggca gccaagccca acggaccgtt gttatacgca actgcaccgc
     2761 tccacgtctg gccttgaccc gtcgtgccgg cgccgttgct gaaaccatac aagccttcga
     2821 a
//
LOCUS       DATGBK010001101         2263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_174911, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001101 DATGBK010000000
VERSION     DATGBK010001101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174911"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1987)
                     /gene="alaS"
                     /locus_tag="VKJ77_15365"
     CDS             complement(<1..1987)
                     /gene="alaS"
                     /locus_tag="VKJ77_15365"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HMC46696.1"
                     /translation="MKAADIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFVNSGMVQ
                     FKDVFLGTESRPYSRATTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFK
                     RDAIHYCWELLTKVYGLPADKLTVTVYQEDDEAFAIWENEIGVPKERIIRIGDNKGAR
                     YASDNFWTMGDTGPCGPCSEVFYDHGPEIWGGPPGSPEEDGDRFIEIWNLVFMQFNRD
                     VQGNMTKLPKQSVDTGMGLERLAAVLQHVHSNYEIDLFQTLIKAAARETDTADLTNNS
                     LKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADL
                     VEEMGSAYPELKDAQSRVTDVLRQEEERFFETIEHGMSMLETELATLDAKGSKQLDGE
                     LAFKLHDTFGFPLDLTADVCRERGITVDEAAFDEAMARQREQARSAGKFKSAQGLDYA
                     GAKTTFHGYENEIFDDAKVIAVYVDGASVKEAQVGQQAVVVLDHTPFYAESGGQAGDQ
                     GVLANAAVRFAVIDTLKVQSDVVGHHGTVEQGTLKVGDVVKAEIDTVRRIRTARNHSA
                     THLMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANA
                     PGIVRVMAYDEAVKGGAMALFGEKYGDEVRVLDLGFSR"
BASE COUNT          379 a          682 c          708 g          494 t
ORIGIN      
        1 cgcgcgagaa accgaggtcg agcacgcgca cttcgtcgcc gtatttttcg ccgaacagcg
       61 ccatcgcgcc gcccttcacc gcttcgtcat acgccatcac acggacgatg cccggtgcgt
      121 ttgccagcac ttccgcgttg acgatttctt ccacgcgacg aatctgctcg tcggtcatcg
      181 gcgcgttgtg cgcgaagtcg aagcgcgtct tgtccggatc gacgagcgaa cccttttgct
      241 gcacgtggct gccgagcact tctcgcagcg ccttgtgcat caagtgcgtg gcagagtgat
      301 tgcgggcggt gcgaatacgg cgaaccgtat cgatttcggc cttcaccacg tcgcctactt
      361 tcagcgtgcc ttgctcgacc gtaccgtgat gaccaacgac gtcggactga accttgaggg
      421 tatcgatgac cgcgaagcgc accgctgcgt tcgcgagcac gccctgatcg cccgcctgac
      481 cgcccgattc ggcgtagaac ggcgtgtgat cgagcacaac gacggcctgc tggccgacct
      541 gcgcttcttt caccgacgca ccgtccacgt acacagcgat gacctttgcg tcgtcaaaga
      601 tttcgttttc gtagccgtgg aacgtggttt tagcgcccgc gtagtccaga ccctgcgccg
      661 atttgaactt gccggccgaa cgtgcttgtt cgcgttgacg tgccatggct tcgtcgaagg
      721 cggcttcgtc gaccgtgatg ccgcgctcgc ggcaaacgtc ggcggtcaga tccagcggga
      781 agccgaacgt gtcgtggagt ttgaacgcga gttcgccgtc cagttgcttc gagcccttgg
      841 cgtcgagcgt ggcgagttcg gtttcgagca tcgacatgcc gtgttcgatt gtctcgaaga
      901 aacgttcctc ttcttgccgt aaaacatccg tcacgcggga ttgcgcgtcc ttgagttccg
      961 gatacgccga gcccatttcc tcgaccagat cggccacgag cttgtggaag aacgcgccct
     1021 tgcggccgag tttgtagccg tggcggattg cccggcgcac gatccggcgc aggacataac
     1081 cgcggccttc gttgccggga atcacgccgt cgacgatcag gaacgagcat gcacgaatat
     1141 ggtccgcgat caccttcagc gaattgttgg tgagatccgc cgtgtcggtt tcacgggcgg
     1201 cggccttgat cagcgtctgg aacaggtcga tttcgtagtt gctgtgcaca tgctggagca
     1261 cggcggcgag gcgctcgagg cccatgccgg tgtccacgct ctgcttgggc agcttcgtca
     1321 tgttgccctg gacgtcgcgg ttgaactgca tgaacacgag attccagatc tcgatgaagc
     1381 ggtcgccgtc ctcttccgga gatcccggcg ggccgcccca gatttccggg ccgtggtcgt
     1441 agaacacttc cgagcatggg ccgcacgggc cggtgtcgcc catggtccag aaattatccg
     1501 atgcgtagcg cgcacccttg ttgtcgccga tgcggatgat ccgttccttc ggtacgccga
     1561 tttcgttttc ccagatggcg aacgcttcgt cgtcttcctg gtagaccgtg accgtgagtt
     1621 tgtcggcggg caggccgtag accttggtca gtagttccca gcagtagtgg atcgcgtcgc
     1681 gcttgaaata gtcgccgaac gagaaattgc ccagcatttc gaagaacgtg tgatggcggg
     1741 ccgtatagcc gacgttttcg aggtcgttgt gcttgccgcc tgcgcggacg ctgcgctgcg
     1801 aggtggtcgc gcgcgaatac ggccggctct ccgtgcccag gaacacgtcc ttgaactgga
     1861 ccatgccgga gttgacgaac agcagcgtgg gatcgttgcc gggcacgagg ctggacgagc
     1921 gcacgatcgt gtggcccttc gattcaaaga acttgaggaa tttctcgcgg atgtcggcgg
     1981 ctttcatggc gtgcgggtct gctgttttgt acggcggcgg cgcttggggc ggagcttctg
     2041 actttttgtc tttagtcgct gatcgcgcgc gagggccggt gccgggtgcc aaaatgggat
     2101 tgtcgattat acggggtttg gagggggttt tcgctggcgc cgacacagcc cgcgagcccc
     2161 gcaacccgat accgtgcacc ggcacgaaca aaaacctcag tccgggtgag aaaccaccgt
     2221 gcttatctcg ccggctaatc tcactgggtt atctcacccc ggc
//
LOCUS       DATGBK010001102         1727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_82649, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001102 DATGBK010000000
VERSION     DATGBK010001102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82649"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..602
                     /locus_tag="VKJ77_15370"
     CDS             <1..602
                     /locus_tag="VKJ77_15370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC46697.1"
                     /translation="TTLADGQRFYADIKGRMAKLGRNPEHLKILPAAFVMVGDSLDEA
                     LEKRARLDSLVHYDSGIASLSIMLGHDVSGFDPDGPLPEIPETNASKSSRERVIEWAS
                     RDNLTIRQLAQRVGGYSGLEMVGTPTMIADQMEQWLVEDGSDGFNVMFPYLPGGLDDF
                     VDKVVPELQARDIFRSEYEGVTLRENLGLPRPGNRFFKA"
     gene            835..1404
                     /locus_tag="VKJ77_15375"
     CDS             835..1404
                     /locus_tag="VKJ77_15375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC46698.1"
                     /translation="MGHSQAEKAATHQRIVDVAARRFRELGLDGIGVADVMKEAGMTV
                     GGFYKHFESRDELVTEAFEVAFKSLDTWEARAENLAQAVRDYLSEAHRDAPGQGCALG
                     ALLGDVGRSNDATREVFTERVKHNLVFSEGLLDIADPAERRARAMLQLSACLGAIGLA
                     RAVSDPALSKEILDGVAAQLMPLLPGLPA"
BASE COUNT          363 a          475 c          548 g          341 t
ORIGIN      
        1 agaccacgct agcggacggt cagcggtttt acgccgatat caaaggacgc atggcgaaac
       61 tcggtcgaaa tcccgagcat ctcaagattc tgccggcggc gttcgtcatg gtcggtgact
      121 cgctggacga ggcactggaa aagcgggcgc gtctcgatag ccttgttcat tacgacagcg
      181 gcatcgcgtc gctctcgatc atgcttggtc acgatgtttc aggcttcgat cccgacggac
      241 cgttgcccga gatacctgaa acgaacgcaa gcaaaagcag ccgcgagcgc gtgatcgaat
      301 gggcgagccg cgacaatctc acgatccgcc agcttgcgca gcgggtcggc ggttattccg
      361 ggcttgaaat ggtcggcacg cccacgatga ttgcagacca gatggagcaa tggctcgtgg
      421 aggacggatc ggatggcttc aacgtgatgt tcccctatct gccgggcgga ctcgacgatt
      481 tcgtcgacaa ggttgttccc gaactgcagg caagagatat ttttcgaagt gaatacgaag
      541 gcgtcaccct gcgagagaat cttgggctgc cgaggcccgg gaaccgcttt ttcaaggcct
      601 aaagaacgga tgacgccgtc tggctgaggc gtcatcggga aacgaaggtt tcttcccatc
      661 cattgtttcg catgcctgag taactttcca ttgcattgcg aaaaatcgca cgaacaggca
      721 agcgacgatg aacactgcgt cgagccagcc cgcttctgtg ccattccggt tctgcattaa
      781 gattgatgtc ccgggggtgc ctatagtcat cccatcacag gacaaacgaa ggtcatggga
      841 cattcacagg cagagaaggc ggcaacgcat cagcggatcg tcgatgtggc ggcacgacgc
      901 tttcgagaac ttgggctgga tggcattggc gttgccgacg tcatgaagga agccggcatg
      961 acggtcggcg gcttctacaa gcattttgaa tcgcgcgatg aactcgtaac cgaggcgttc
     1021 gaggttgcat tcaagagtct cgacacatgg gaagcacgtg cagaaaatct cgcgcaggcg
     1081 gtgcgcgatt acctgagcga ggcgcatcgg gatgcccctg gccaaggttg tgcgttgggc
     1141 gcgttgctgg gtgatgtcgg gcggagcaac gacgccacgc gcgaggtatt caccgaacgg
     1201 gtcaagcaca atctcgtgtt ctccgagggt ttgctcgata tcgcggaccc ggccgaacgc
     1261 cgtgcccgcg caatgctgca actgagcgcc tgtctcggcg cgatcgggtt ggcgagagcg
     1321 gtgtcggacc cggctttgtc gaaggagatc ctcgacggcg tcgccgcgca actgatgccc
     1381 ttgttgccag ggctgccggc ttgagaacac acgtcaacgc gagcagcgct acagccgagc
     1441 gagcaccggt ttaatgtaaa caattcttga agcggtgcgt gcaatacatt acattcgacc
     1501 cgttgtccgc cggtcggtca tcggcacggg tctaggtggc cggcaaccga atgctgaatc
     1561 gtgctcttgg agattgacga tgaaagtgct taacctgatt tgcgtatccg caatcttgct
     1621 cggcgcgtcc ggcatggctg cggcccaggg caacggcaac ggcggttcgg gcggcggcaa
     1681 cgcgcatggc gccgcgacgg ccggtccgac catgggtggc gacaata
//
LOCUS       DATGBK010001103         3451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_291139, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001103 DATGBK010000000
VERSION     DATGBK010001103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3451
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291139"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1622
                     /locus_tag="VKJ77_15380"
     CDS             <1..1622
                     /locus_tag="VKJ77_15380"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HMC46699.1"
                     /translation="PYSEDARDKDAEHLKDLYKQYDLTIGDFEAGPDPTTVDEKAGTA
                     AVRYTISVMRVGAIEITGNTRTHDDVIRRELRLHPGMVLTDSAIHRDYDRLTNLGFFE
                     KIELNPKPGPDPKKPATVTLDWQVKEQRTGQAQIGAGYSGGLTGTGLTGTLSYSNNNI
                     NGTGNGGSIRLERGAQTADASLSVSVPYIGHTAASQKYSLGASIFTNSQTNFYPVYFV
                     PTPTPAPGVPAGDPNAPIPVSIIPQDPTNATAVNNVASTYHSRSAGVSVTVGRHLTDV
                     YRVSAGVNVQKVAASADIGFPFFFPTQQNLALGAFSTPIPSIAGTSTGAVTSALGISA
                     PSIANVDSTRPFNLRSFVIGFGADSRDDIFNPRRGSNITLTDETSSHSFGSDFDYGIY
                     TLDASKFFPLRKNIVLGFHGLIGATTGAIPPNKLFTFSDQQLRGYTDPFYGTDELLFQ
                     TELRVPLTPDRKFTVVGFAESGAMRIRGAQPLQDAITGQILNLDNYTFHSDIGVGLRF
                     DIPQLGLKTIRLDFAKGANGTHTAFGIGQSF"
     gene            1634..2434
                     /locus_tag="VKJ77_15385"
     CDS             1634..2434
                     /locus_tag="VKJ77_15385"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HMC46700.1"
                     /translation="MIKHGRSAALAVAVAAAFLAAPAALAADVTDIGFVDQAALAALP
                     SFQTANRQFTAYTESLRRQYSARAKGVSQSQQASLMQEFNAKVNDRQRQMFGPLFGKA
                     QVAIASIASSKNLTVVVDKRIVIFGGTDITQNVRDLLSSPGDPVPPASSPAPSSVGYV
                     DQAAIDGVPKIKAVQDDFVKFKSDQDKAAQDKLKNAKSAADRDTIFKDYKKTLDDKSN
                     QTIKPLVDQTRNAISGVAKKKNLTLVIDRGNIIYGGQDITSDVTAALK"
     gene            2434..>3451
                     /locus_tag="VKJ77_15390"
     CDS             2434..>3451
                     /locus_tag="VKJ77_15390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46701.1"
                     /translation="MPRWSRLALLAVAVCGMSACAKNATQPDAAASGTGSVGFVRMSE
                     LVKHHPLYGQLAQYNDSIAALNLSATVPQVAKPDAAIAKQEAALQKELNDAADRTKKL
                     LDEKSKEYQQRESQAIAQALHASGSGPSAGAIQQQISSTAHTQSTTVAAQAVKDLQGY
                     RKTVEAQNDAQLAAAQKALTDRASRTYRAKQDELSAKESALTLDLATKDAVERLSLRT
                     RLSSLALEDAEREDARAKLAAIDRHEADTLAPVKNRDQQTLANLQTQLHDQVRHEMEA
                     KANEIRGQSMAKYRAREADVRREFTPAIATTVDSAGRPAQSINPNLPPQVRARIEALH
                     NDYQK"
BASE COUNT          776 a         1085 c          968 g          622 t
ORIGIN      
        1 cgccgtattc cgaagatgcg cgcgacaaag atgccgagca tctcaaggat ctctataagc
       61 aatacgattt gacgatcggc gattttgagg ccggccccga cccgacgacc gttgacgaaa
      121 aagccggaac cgctgccgtt cgctacacga tttccgtgat gcgcgtcggt gcgatcgaaa
      181 ttaccggcaa cacgcgcacg cacgacgatg tcatccggcg ggagctgcgg ttacatccgg
      241 gcatggtttt aacggactcc gcaatccatc gcgattacga tcgcctgacc aatctcggct
      301 tctttgaaaa gatcgaactc aatccgaaac ccggacccga tcccaaaaag cccgcgaccg
      361 ttacgctaga ttggcaagtg aaagaacaac gcacgggtca agcgcaaatc ggcgccggct
      421 actcgggcgg tctgaccggc acgggcctga ccggcacgct gtcgtactcg aataacaaca
      481 tcaacggcac gggcaacggc ggatcgattc gcttggagcg cggtgcgcaa accgccgacg
      541 cctcgctttc ggtcagcgtg ccgtatatcg gacacaccgc tgcgtcgcag aaatacagct
      601 tgggcgcatc gatctttacg aactcccaaa ccaatttcta tccggtctat ttcgtgccga
      661 ccccgacgcc cgcacccggt gttccggcgg gcgacccaaa cgcgccgatt ccggtgtcga
      721 tcattccgca agatcccacc aacgcaaccg ccgttaacaa cgttgcgtcg acgtatcatt
      781 cgcgctcggc cggtgtcagc gtaaccgtgg gtcgccatct caccgacgtg tatcgcgtta
      841 gtgccggcgt caacgttcag aaggtcgcag cgagcgccga catcgggttc ccgttcttct
      901 ttccgaccca gcagaatctc gcgctcggcg cgttttccac cccgatcccc tcgatcgcgg
      961 gaacgagcac gggtgcggtc acctcggcgt tgggcatctc cgccccatcg attgcaaacg
     1021 tcgattcgac ccggccgttt aacctgcgct cgttcgtgat tgggttcggc gcggattcac
     1081 gcgacgatat cttcaacccg cgtcgcggct cgaatatcac gctgaccgat gagacgagtt
     1141 cgcactcgtt cggctcggat ttcgactacg gcatctacac cctggacgcg agcaagttct
     1201 ttccgttgcg caagaatatc gtgctcggtt ttcatggtct gatcggcgcg acgaccggcg
     1261 cgattccgcc caataagctc ttcacgtttt ccgatcagca gttgcgcggc tacacggacc
     1321 cgttttatgg aaccgatgag ctgctcttcc aaaccgaact gcgcgtgccg ctgacgcccg
     1381 atcgcaagtt caccgtcgtc ggctttgcgg agtcgggcgc gatgcggatt cgcggcgccc
     1441 agcccctcca ggacgcgata acgggacaaa tcctcaatct tgacaattat acgttccata
     1501 gcgatatcgg agtcggactc cggttcgaca taccccaatt gggcctcaag acgatccggt
     1561 tggacttcgc caagggggcc aacgggacgc acaccgcttt tggaatcggt caaagcttct
     1621 aattatgatt cgaatgatca agcacggccg tagcgccgcg ctcgccgtgg cggtcgccgc
     1681 cgctttcctt gctgcccccg ctgccctggc cgccgacgtg accgatatcg gtttcgtcga
     1741 tcaggcggcg cttgccgcgc tgcccagctt tcagacggcg aaccggcaat tcaccgcata
     1801 taccgaaagt ctacgccgcc agtattcggc ccgcgccaag ggcgtatcgc agagccagca
     1861 agcgtcgttg atgcaagaat ttaacgccaa ggtgaacgac cgccagcgac agatgttcgg
     1921 gccgctgttc ggaaaggctc aggttgccat tgcatcgatt gcttccagca aaaatctcac
     1981 ggtcgtcgtc gacaagcgca tcgtgatttt tggcggcacc gatatcacgc aaaacgttcg
     2041 cgacctcttg tcgagcccgg gcgatcccgt gccgccggct agctcgcccg cgccgtcgtc
     2101 ggtcggctat gtcgatcagg ccgcgatcga cggcgtgccg aaaatcaaag ccgttcaaga
     2161 cgactttgtg aagttcaaga gcgatcagga caaagccgcg caagacaaac tcaagaatgc
     2221 gaaatccgcg gccgaccgcg acacgatttt caaagactac aagaagacgc tcgacgacaa
     2281 gtccaatcaa acgatcaagc cgctcgtcga tcaaacgcgt aacgcgattt ccggtgtcgc
     2341 caagaagaag aacctgacgc tggtcatcga tcgcggaaac atcatctacg gcggacagga
     2401 catcacgtcc gacgtaaccg cagcgctgaa ataatgcccc gttggtcccg gctcgcactt
     2461 ctcgcggttg ccgtctgcgg gatgagcgcg tgcgcgaaaa acgcgacgca gcccgatgcc
     2521 gctgccagcg gcacgggtag tgttggtttc gtgcgcatga gcgaactggt gaagcaccat
     2581 ccgttgtacg gccagctcgc gcaatacaac gatagcattg ccgcgctcaa tttaagtgcg
     2641 accgttccgc aagttgccaa gcccgatgcg gcgattgcca aacaagaagc ggcattgcaa
     2701 aaagaactca atgacgccgc cgaccggacc aagaaactgc tggacgagaa atcgaaagaa
     2761 tatcagcagc gtgaatcgca ggcgatcgca caagccttac atgcgagcgg cagcggtccg
     2821 tctgccggcg cgattcagca gcaaatttca agcacggcgc atacccaatc gacaacggtt
     2881 gcggcgcaag cggtaaaaga tcttcaaggc taccgcaaga cggtcgaagc gcagaacgac
     2941 gcgcagctcg cggccgcgca aaaggcgctg accgatcggg catcgcgcac ctatcgcgcg
     3001 aagcaggatg aactgtcggc taaagaatcg gcgttgacgc tcgaccttgc gaccaaggac
     3061 gcggtcgaac ggttgtcact gcgcacccgg ctctcgagct tggcgcttga agatgccgaa
     3121 cgtgaagacg ctcgcgcgaa gctggccgcg atcgaccggc atgaagccga cacgctcgcg
     3181 ccggtgaaga accgcgacca gcaaacgctg gcgaatttgc aaacgcaact gcacgatcaa
     3241 gttcgacacg aaatggaagc caaggccaac gaaatccgcg gacagtcgat ggcaaaatat
     3301 cgcgcgcgtg aagccgacgt acgacgcgag tttacgccgg cgatcgcaac gaccgttgat
     3361 tcggccggcc ggccggcgca gtcgatcaat ccgaatttgc ccccgcaagt ccgcgcccgc
     3421 atcgaagcgt tacacaacga ttaccagaag c
//
LOCUS       DATGBK010001104         2438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_221863, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001104 DATGBK010000000
VERSION     DATGBK010001104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221863"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VKJ77_15395"
     CDS             complement(<1..234)
                     /locus_tag="VKJ77_15395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007872774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46702.1"
                     /translation="MALRKKTQQKTHPRTQPRSHHYHVYVIELADIVWNEARFRRANP
                     DYVLGMPFVYVGMTGIDPDVRFDKHKAGIQSNRY"
     gene            621..2027
                     /gene="gndA"
                     /locus_tag="VKJ77_15400"
     CDS             621..2027
                     /gene="gndA"
                     /locus_tag="VKJ77_15400"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HMC46703.1"
                     /translation="MSKQAIGVVGLAVMGRNLALNIESRGHAVSVYNRSREKTDELIA
                     EHPDKKLVPAYTLEEFVESLEKPRRILLMVKAGQGTDATIDSLRPLLDKGDILIDGGN
                     THFTDTIRRNTDLAKSGLHFIGTGVSGGEEGALKGPSIMPGGQKEAYDLVAPILTEIA
                     AKAPDGEPCVAYMGPDGAGHYVKMVHNGIEYGDMQLIAESYDVLKRVAGLSNEELGKV
                     YVEWNKGELDSYLIEITSKIFSKKDEETGKDLVDVILDRAAQKGTGKWTSQNALDLGA
                     PLPLITEAVFARVLSSLKDQRVEASKQLTGPSPKFDGDRDAFVEAVRRALFLSKIVSY
                     AQGFAQLRAASEEYKWDLQYGQIAKIFRAGCIIRAGFLQKITDAYKTNADLHNLLLDP
                     YFSDIATKYQGALRDVVVAAVKAGVPVPAFSSAVAYYDSYRSETLPANLVQAQRDFFG
                     AHTFERVDKKGSFHADWS"
     gene            2214..>2438
                     /locus_tag="VKJ77_15405"
     CDS             2214..>2438
                     /locus_tag="VKJ77_15405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46704.1"
                     /translation="MATALTVLNRESELSYAYLHAIASHAGVNCKTSNRHDDNAGIDA
                     MLTGWESFPNGGSLTEVDIKVQLKASIKTPF"
BASE COUNT          495 a          680 c          766 g          497 t
ORIGIN      
        1 ataccggttc gactggatgc cggccttgtg tttgtcgaaa cgaacgtctg gatcgatgcc
       61 cgtcatgcct acgtagacga agggcatgcc gagcacgtaa tccggatttg cgcgccggaa
      121 acgcgcttca ttccagacga tgtcggccag ttcgatcacg tagacgtggt aatggtgaga
      181 ccttggctga gtccttgggt gagtcttttg ctgagtcttt ttccgaagcg ccatgcggtt
      241 gccctgtttc gcctggttcg agccagtcgc gccgcacctg aaacgggtcg cggatgctca
      301 ttctagaccg gtgtcaggcg cgctgcccgg ctgcggccgg cgtgctgtcc ggccgctgtc
      361 cggtcgtgcg cgcgcgtgcg atgtctgcca gcgccgtgtc aaagtggtaa tctcgctccg
      421 tctgcgcgtt ccgcgcggcg tttgcgcgtg tccaccggcc agactggtgg acacgcgtag
      481 tgtccgtgcc gctttcgcca ctgtttcctg gcgcgagagc ctgtccggaa cgccgtcgcg
      541 ggcaccgccc caattgacaa atcgcatccg tcgcgtgtgt aggcacgagc cgcccgcgct
      601 tcggtcattc ggagagaaac atgagcaagc aagcaatcgg cgttgtcggc ctcgccgtca
      661 tgggacgcaa tctggcgttg aacatcgaga gccgcggaca cgcggtgtcc gtgtacaacc
      721 gcagccgcga aaaaaccgac gaactgatcg ccgagcatcc cgacaagaaa ctcgtgcctg
      781 cgtacacgct ggaagaattc gtcgaatcgc ttgagaaacc gcgccgcatc ctgctgatgg
      841 tcaaggccgg ccagggcacc gacgccacca tcgactcgct gcgccctctg ctcgacaagg
      901 gcgacatcct gatcgacggc ggcaacaccc atttcaccga taccatccgc cgcaacaccg
      961 acctcgccaa gtcagggctg cacttcatcg gcacgggtgt gtccggcggt gaggaaggcg
     1021 ccttgaaagg cccgtcgatc atgccgggcg gccagaagga agcgtacgac ctggtggctc
     1081 cgatcctgac cgagatcgct gccaaggcgc cggacggcga gccgtgcgtg gcttacatgg
     1141 gcccggacgg cgcgggacat tacgtgaaga tggttcacaa cggcatcgaa tacggcgaca
     1201 tgcagttgat cgctgaaagc tacgacgtgc tcaagcgcgt ggcgggcttg tcgaacgaag
     1261 aactgggcaa ggtatatgtc gagtggaaca agggcgaact ggatagttac ctgatcgaga
     1321 tcacgtcgaa gattttctcg aagaaggatg aagagacggg caaggatctg gtcgatgtca
     1381 ttctcgaccg tgccgcgcaa aaaggtacgg gcaagtggac gagccagaac gcactcgatc
     1441 ttggcgctcc gttgccgctg attacggaag ctgtgtttgc gcgcgtgctg tcttcgctga
     1501 aggatcagcg cgtggaagct agcaagcagt tgacaggacc gtcgccgaag tttgatggcg
     1561 atcgtgatgc cttcgttgaa gccgtgcggc gcgcgttgtt cctgagcaag attgtttcgt
     1621 acgcgcaggg gttcgcgcag ttgcgcgcgg cgtcggaaga gtacaagtgg gacttgcaat
     1681 atggtcagat cgcgaagatc ttccgcgcgg gttgcattat ccgtgcgggc tttttgcaga
     1741 agatcacgga tgcttacaag accaacgctg acttgcacaa cttgctgctc gatccgtatt
     1801 tcagcgacat cgcgacgaag tatcagggtg cgttgcgtga tgtggttgtc gcggcggtga
     1861 aggcgggtgt gccggtgccg gcgttctcgt cggcagtggc ttattacgat agttaccggt
     1921 cggagacgtt gccggcgaat ctggtgcaag cacagcgcga tttcttcggc gcgcatacgt
     1981 tcgaacgggt ggacaagaag ggcagtttcc acgccgactg gtcgtaagtt gctgagaagc
     2041 cactgagaag cggctggcct ttccggtagt tcaacgccga cgctttcgcg tcggcgtttt
     2101 tttgccctga gcagaatcgt caaattttgt cgcagcgaat ttttccacaa gtcgaataac
     2161 ggtgtttgcg cctatgcttt cctgtcgatg gataacagaa cggcaggaag atcatggcaa
     2221 cagcactcac agtattaaat cgggaatcgg agctgagcta cgcttacctc cacgcaatcg
     2281 catcccatgc gggcgtcaac tgcaagacga gcaaccggca cgacgacaat gccgggatcg
     2341 atgccatgct gaccggttgg gagtcatttc cgaatggcgg aagcctgacc gaagtcgaca
     2401 tcaaggtcca gctgaaggca agcatcaaga caccattc
//
LOCUS       DATGBK010001105         1612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_336984, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001105 DATGBK010000000
VERSION     DATGBK010001105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336984"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..1007)
                     /locus_tag="VKJ77_15410"
     CDS             complement(42..1007)
                     /locus_tag="VKJ77_15410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46705.1"
                     /translation="MRRPRHPIDLRALQAFVAVCDTGSMTAAAKQLGVSQSAISQAVS
                     ALEREQGTSLFDRDSRPPRANSAGRALLELATPLLDHAQRVSARIDEVSDAGNASVRL
                     GCVDSFAGTIGPELIRALSGSSRQIALWSGLTPGLTKQLHDREIDLAVCTQTVISDPR
                     IVEIPLFSEAFVAVASRRFLASRPAADWRMLASNLPLIRYTGRSVIGQQVERFARHLG
                     IDSPRRYEFDATDPLLSLVAAGLGFAISTPLCLWQARHYLEEIDVLPLPPGGLARRDF
                     FLLHRESEWDGFAAELISLTRGVLDQRIRPALQQALPNLPDDAIR"
     gene            complement(1425..>1612)
                     /locus_tag="VKJ77_15415"
     CDS             complement(1425..>1612)
                     /locus_tag="VKJ77_15415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="short-chain dehydrogenase/reductase"
                     /protein_id="HMC46706.1"
                     /translation="GDPVRAAQAIIDAALSDTPPLRLLLGKAALELARKKVASLTHDF
                     DTWEKTTIGADFPEGSN"
BASE COUNT          344 a          476 c          509 g          283 t
ORIGIN      
        1 tgaggcgtga aaaagaagtc gataggcaag tcaataagcg gttatcggat cgcgtcgtcc
       61 ggcaggttgg gcagcgcttg ctgcagcgcc gggcgaatgc gctggtcgag cacgccacgc
      121 gtcaacgaga tcagttcggc cgcaaaacca tcccactcgc tctcacgatg cagcaggaaa
      181 aaatcgcggc gtgcaaggcc gcccggcggc agcggcaaca catcgatttc ctccagataa
      241 tgacgcgcct gccacaagca aagcggcgtg gagatggcga aaccgagacc ggcggcaacg
      301 aggctaagca ggggatcggt ggcatcgaat tcataacgcc gcgggctgtc gataccaaga
      361 tgccgcgcaa aacgctcgac ctgctggccg atcaccgagc gacccgtata acggatcaaa
      421 ggaagattgc tagcgagcat acgccagtcc gccgcgggtc gcgacgcgag gaagcgtcgc
      481 gacgcaaccg ctacgaacgc ctcggagaac aacggaatct ccacaatacg cgggtctgaa
      541 atgacagtct gggtgcatac agccagatcg atctcgcgat cgtgcaactg cttggtcagc
      601 cccggcgtca gtcccgacca caatgcaatc tgccgcgacg aacccgagag tgcgcgaatc
      661 agttccggac cgatcgtgcc cgcgaacgag tccacacaac caagccgaac cgaagcgtta
      721 cctgcgtcgg atacctcgtc aatgcgggca ctcacgcgtt gcgcgtgatc gagcaagggt
      781 gtggcgagtt caagcaaggc tcgccctgcg ctgttggcac gcggcgggcg gctgtcccgg
      841 tcgaacaggc ttgtaccctg ctcccgttcg agcgcggata cagcctggct gatcgcgctc
      901 tggctcacgc cgagctgctt tgcagcggcg gtcatcgagc ctgtatcgca gacggcaacg
      961 aatgcctgca gcgcgcgcag gtcgatgggg tgacgcggtc gtctcatggg cgctccggtt
     1021 tggcgcggcg ccggcttagc aaggatgaca ggatgcccgt gctgctaagg accgtgcgaa
     1081 gctgcagcgt tttccgtcaa tgtccataag tttgccttat gcaaaatgtt tgcggaagcg
     1141 gcatttcctg ccattgcggt gacgcacggg ctcatgcgac ccgagaacgg gcgttcttat
     1201 ctcgtgtgat ggaagccggg gtatggacga gacgcgccaa gcgcgctttg gcggttggag
     1261 gtgtccaaca gtcaaggcgc acgcatttca atcgtggatt gcgaaggaag cgtgcgcctc
     1321 ggttgcaagt cgcggcaagg gatcagaaag actctcgtgc gacgcatgat ggctcagcgc
     1381 taaatactcg tcgcgcacct cacgtatcgc gcgatgttcc ccgcttagtt agagccttcc
     1441 ggaaaatcag cgccaatagt cgtcttttcc caggtatcga agtcgtgagt cagcgaagcg
     1501 actttcttgc gcgccagttc aagcgcggct ttgccaagca acaggcgtaa cggcggggta
     1561 tccgagagtg ccgcgtcaat gatcgcctgt gccgcgcgca cgggatcacc cg
//
LOCUS       DATGBK010001106         3786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_336994, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001106 DATGBK010000000
VERSION     DATGBK010001106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3786
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336994"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..1130)
                     /gene="pstS"
                     /locus_tag="VKJ77_15420"
     CDS             complement(39..1130)
                     /gene="pstS"
                     /locus_tag="VKJ77_15420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019938944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HMC46707.1"
                     /translation="MTKLYKNPARRLRPHRFAALPLCLAALSLMTSALANAQDLTLSE
                     TGSTLMYPLFTTWVGEYTKSHPGVHITVGETGSEAGIQQVLAGKVQIGASDAYMSDAE
                     MRQHPQIINVPLAIAAQTVNYNLPGLNATHLKMDGPVLAAIYTGEIRNWDAPQIAALI
                     RGVALPHNPIVPIHRAEGSGDTFVFTQFLSFSTPNWESNQGYGTSISWPTVAGSATAT
                     GNAGMVQALQATPYSIGYVGVSFTDKLAAAHLGTAALKNGAGEFVTPSKDTITAGAAS
                     LGPRTPADERLSLVFAPASGAYPLVNYEYAIVATKQPDATTAAALRRFLLWSIVPSET
                     NEAYLDTVHFIPLPPHTWELSQAQVQSIR"
     gene            complement(1201..2646)
                     /locus_tag="VKJ77_15425"
     CDS             complement(1201..2646)
                     /locus_tag="VKJ77_15425"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46708.1"
                     /translation="MKSVQQYIDEHPMWPDGTHLASVPMTAMQWRIWALAAAGKFFEG
                     FVVFMTGVALPLISREFGISAAQNGFISAASLMGILVGAVGLGGMSDYFGRKRMFIVE
                     MIIFVAFLVLLVLCTNFTSLVICLFGLGVALGCDYPTAHMIISESIPSSSRGKLVLAA
                     FGFQALGALGGTAVGFLVLSTIPTLDSWRWMYGTAIIPALAVTIGRFYITESPSWLHI
                     RGAVDRAEAAAQRLLVRSPQYPTSIALSREVEMAATGHGGKKSFSALFARRNLRATIL
                     ASVPWFLQDLGTYGIGIFTPTILAAAFGSKPDHVRSISDLILNDILAAKGSALITMLL
                     IVGIVFAVILADRVGRIWLQVIGFIGCAAGLLIASFSDGFEGSTKTVVIFAGFMLFNF
                     MTNLGPNAQTYLLAGEVFPTAIRGTGAGFAAAVGKIGAVATAFLFPILLTGIGTGPLL
                     YILVATSILGAVVTWIFRIETNGVSLDDIGK"
     gene            complement(3209..>3786)
                     /locus_tag="VKJ77_15430"
     CDS             complement(3209..>3786)
                     /locus_tag="VKJ77_15430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Dyp-type peroxidase"
                     /protein_id="HMC46709.1"
                     /translation="HGFRYFDLRDMVGFVDGTENPRGREAVEFALISDQDPAFAGGSY
                     VMVQKYLHDMAGWDALPVEAQERIIGRKKLSDVELADGVKPSSSHSSLTTIEKDGQEV
                     KILRHNMAFGRPGAGEFGTYFIGYASSPEPIEQMLENMFVGRPPGNYDRLLDYSRAVT
                     GGLFFVPSASMLEDLADRDPQASANESASAG"
BASE COUNT          779 a         1126 c         1148 g          733 t
ORIGIN      
        1 caacgaaccg cgttgcctcg cccggtggaa gatcccgctt acctgattga ctggacctgc
       61 gcctggctca actcccacgt atgcggtggc aacggaatga agtgcaccgt atccagatac
      121 gcctcattgg tctcggacgg cacgatcgac cagagcaaga acctgcgcag cgccgcagcc
      181 gtcgtggcgt caggctgttt cgtcgcaaca atcgcgtact cgtaattgac gagcgggtag
      241 gcacccgatg ccggcgcgaa cacaaggctc agacgttcgt cggcgggtgt gcgcggaccg
      301 agtgacgcgg cgcctgccgt gatcgtgtct ttgctaggcg taacaaactc gcctgctcca
      361 ttcttgagtg cggcagttcc gagatgcgcg gcggccagct tgtcagtaaa actgacaccg
      421 acataaccga tggaataggg cgtcgcctgc agcgcctgca ccatgcccgc gttgcccgtt
      481 gcggtcgcac tgcccgccac ggtcggccac gagattgacg tgccgtatcc ctggttactt
      541 tcccagtttg gcgtcgagaa cgacaggaac tgggtgaaca cgaaggtatc tccagagcct
      601 tcagcccgat ggatcggcac gatcggatta tgcggcaacg ccacgccccg gatgagcgcg
      661 gcgatctgcg gcgcatccca gttgcgaatc tcgcctgtgt agatggcggc gagcaccggt
      721 ccgtccatct tgaggtgcgt cgcgttgagg ccgggcaggt tgtagttgac cgtctgcgcg
      781 gcaatggcca gcgggacgtt gatgatctgc gggtgttgcc gcatctcggc atcggacata
      841 taggcgtcgg atgcgccgat ctgaaccttg cccgccagca cctgctggat accggcctcg
      901 gagccggtct cgccgaccgt aatgtggacg ccgggatgcg acttcgtgta ctcgcccacc
      961 caggtggtga agagcggata catcaaggtc gagccggttt cgctcaatgt gaggtcctgc
     1021 gcattggcca acgcactcgt catcaggctc aacgcagcca ggcacagcgg cagggctgcg
     1081 aaccggtgcg ggcgcaaccg ccgtgccggg tttttataga gcttggtcat gcaggtctcc
     1141 gtcgcgatac tggaaccaac tcttgcaaat ggaatttcac ggcggtgcgt gaacgcgcgc
     1201 ttattttccg atgtcgtcaa ggctcacgcc gtttgtctca atgcgaaata tccacgtcac
     1261 cacggcgccg agaatcgatg tggccacgag aatgtagaga agcggaccgg tgccgatgcc
     1321 cgtcagcaga atggggaaaa ggaacgcggt cgcgaccgcg ccgatcttgc cgacggctgc
     1381 cgcgaacccg gcgccggtgc cgcgaatggc tgtcggaaac acttcgcctg ccagcaggta
     1441 ggtctgtgcg ttcggaccga ggttggtcat gaaattgaag agcatgaagc cggcgaaaat
     1501 caccaccgtc ttggtcgacc cttcaaaacc atcggagaac gaagcaatca gcaagcctgc
     1561 cgcacaaccg atgaaaccaa tgacttgcag ccatattcgt ccgaccctgt ccgcgaggat
     1621 gaccgcgaaa acgataccga caatcagcag catggtgatg agggcagagc ccttggctgc
     1681 gagtatgtcg ttcagtatca ggtcgctgat gctgcgaaca tgatcaggct tgctgccgaa
     1741 cgccgcggcg agaatggtcg gtgtgaagat gccgatcccg tacgtgccga gatcctgcag
     1801 gaaccacggc actgaggcca ggatcgtggc tcgcaggttg cgccgcgcga acagcgcgga
     1861 aaagctcttc ttgccgccgt ggccagtggc ggccatttct acttcgcgcg acaacgcaat
     1921 gctggtcggg tactgcgggc tgcgcaccag caatcgctgc gcagcggctt ccgcgcggtc
     1981 gaccgcaccg cgaatatgca gccagctggg gctttccgta atgtagaagc ggccgattgt
     2041 caccgccagc gccggtatga tcgccgtgcc gtacatccag cgccacgaat cgagggtcgg
     2101 gattgtcgac aggacgagga agcccaccgc cgtgccgccg agcgcgccca acgcctggaa
     2161 gccgaacgct gccagcacaa gcttgcctcg actgctgctg ggaatgcttt ccgaaatgat
     2221 catgtgcgca gtcgggtaat cgcagccgag cgccacgccg agtccaaaca ggcagatcac
     2281 gagcgaggtg aagttggtgc aaagaacgag cagcaccagg aacgccacga aaatgatcat
     2341 ctccacgatg aacatccgct tacgcccgaa gtagtcggac atacctccga gacccacggc
     2401 tccgaccagg atacccatca ggctggcggc gctgataaag ccgttctgtg ccgcgctgat
     2461 gccgaactcg cgcgagatca gcgggagcgc tacgccggtc atgaagacga cgaatccttc
     2521 gaagaacttt cccgctgcgg ccagcgccca gatgcgccat tgcatcgcgg tcatgggtac
     2581 cgacgcgaga tgtgttccat caggccacat cgggtgctcg tcgatgtact gctggaccga
     2641 tttcacaccg ttgctctgta acctgtcgga ctctgccaca tcatgcataa ctcgctcccg
     2701 gtgcaattgc ggctattgcg atggcgatta aacgctggag agcagttccc cgcgagcgtc
     2761 atcgcctcgt cgagcgtgcc tttcgcggcg cgcggatctg gttattgctg gctgatgcaa
     2821 cacgtctcgt tctattgtcg aagcgaatct ttcgccgaga atgtgcgatg ccagatttcc
     2881 atcgtgaccg gggtaggtgt cgtgcggatg acaagagcag gccgagggtt tgctaaggtt
     2941 tgtaagcttg gggccaatga ggaaggaggg ccgatgcgct cgcggcttcg tcgtgaacga
     3001 aaacgtctgt gcgtccgcgt gcggctataa atgcgcttct gatgggaggt atttatcggg
     3061 ttaatccatt tgtatggatt ccccgcaagc gcagagcagc tgtgctttca gtttgtaagt
     3121 tatccataac gtttcgtttt aacgcagcag cgttgccagc cacgagtctt ggcgtagcaa
     3181 cgcgagcgtg tgttaccggt tccagcagtc acccagccga ggccgattca ttcgccgaag
     3241 cctgcggatc acgatccgca agatcctcga gcatggaagc cgatggaaca aagaacaggc
     3301 caccggtgac cgcgcggctg taatcaagaa gccggtcgta gttgccagga gggcgtccga
     3361 caaacatgtt ctccagcatt tgctcgattg gctcgggtga actcgcatag ccgataaagt
     3421 aggttccaaa ctcgcccgcg cccgggcggc cgaatgccat gttgtgacgc aggattttca
     3481 cttcctgacc gtccttttcg atcgtcgtca gcgagctgtg cgaagacgac ggcttgactc
     3541 cgtcggcaag ctcaacatcg gataatttct tgcggccgat aatgcgttcc tgcgcctcga
     3601 ctggaagtgc gtcccagcca gccatgtcgt gcaggtactt ctgcaccatc acataactgc
     3661 cgcccgcaaa tgccggatcc tgatcgctga tcagggcaaa ctcgaccgcc tcgcggcccc
     3721 tcgggttttc cgtgccgtcg acaaaaccca ccatgtcgcg caggtcaaaa tagcgaaaac
     3781 catgga
//
LOCUS       DATGBK010001107         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_314126, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001107 DATGBK010000000
VERSION     DATGBK010001107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314126"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1689)
                     /locus_tag="VKJ77_15435"
     CDS             complement(<1..>1689)
                     /locus_tag="VKJ77_15435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004522968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HMC46710.1"
                     /translation="TVEGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDD
                     HGCVSSSMPHQSDQAMIAWHMPVVNPSNIADMLEFGLYGWALSRFSGAWVGYKAISET
                     VESGSTVDLDGFQTVWPAPEGFVVPEGGLHNRWPDLPSLTIEARLAAKLDAVRYFSKT
                     HSIDKWIAPSRHANVGIVTCGKAHLDLMETLRRLDLTVDDLDAAGVRIYKVGLSFPLE
                     TTRLDTFVEGLSEVLVIEEKGPVIEQQIKDHFYNRTQGSRPIVVGKNAQDGAMLLSAL
                     GELRPSRVLPVFADWLARHKPALDRRDKVVDLVAPQILSNAADTVKRTPYFCSGCPHN
                     TSTKVPEGSIAQAGIGCHFMASWMERDTTGLIQMGGEGVDWASHSMFTKTPHVFQNLG
                     DGTYFHSGILAIRQAVAANANITYKILYNDAVAMTGGQPVDGSISVPQIARQVEAEGI
                     ATLVVVSDEPEKYDGHHDQFPKGTTYHHRRELDDVQRRLRDIKGVTVLIYDQTCAAEK
                     RRRRKKGEFPDPDKRLFINEAVCEGCGDCGVQSNCLSVEPVETELGRKRRIDQSS"
BASE COUNT          331 a          535 c          484 g          339 t
ORIGIN      
        1 gacgattggt cgatgcggcg cttgcgcccg agttcggttt ccaccggttc caccgataaa
       61 caattgctct gcacgccgca atcgccacag ccttcgcaca cggcttcgtt gatgaacagg
      121 cgcttgtcgg gatcgggaaa ctcgcctttc ttcctgcgac ggcgtttttc cgccgcgcag
      181 gtttgatcgt agatgaggac ggtcacgccc ttgatatcgc gcaaccgccg ctggacatcg
      241 tcgagttcgc gccgatgatg gtatgtcgtc cccttcggaa actgatcgtg atgaccgtcg
      301 tatttctcgg gttcatcgct gacgaccacc agcgtcgcga taccttcggc ttccacttgc
      361 cgcgcgattt gcggcacgga aatactgcca tcgacgggct gaccgccggt catcgcgacg
      421 gcgtcgttgt acaggatctt gtacgtgatg ttggcgttcg ccgcgactgc ctggcgaata
      481 gcgaggattc ctgagtgaaa gtaggtgcca tcgccgagat tctggaacac gtgcggcgtt
      541 ttcgtgaaca tggaatgcga agcccaatcc acgccttctc cgcccatttg aatcaggccc
      601 gttgtatcgc gctccatcca cgacgccatg aagtggcagc caatcccagc ctgtgcgatc
      661 gatccttcag gcactttcgt cgatgtattg tgcggacagc ccgagcaaaa atacggcgtg
      721 cgtttgacgg tatcggcagc attcgacagg atttgcggcg cgacgagatc cacgacttta
      781 tcgcggcgat ccagcgcagg cttgtgccgc gcgagccagt ccgcgaacac aggcaacacg
      841 cgcgatgggc gcaattcgcc aagcgcactc agcagcatgg ccccgtcctg cgcgttcttg
      901 ccgaccacga tcggccgcga gccttgtgtc cgattataga aatggtcctt gatctgctgc
      961 tcgatcaccg ggcctttttc ttcgatcacg aggacttcag agagaccttc cacgaaggta
     1021 tcgagacgcg tggtttccag cggaaacgac aaacccactt tatagatacg cacgccggcg
     1081 gcatccaggt catcgacggt gagatccagg cggcgcaacg tttccatcag gtcgagatgc
     1141 gccttgccgc acgtgacaat gccgacgttc gcgtgacgac tcggtgcgat ccatttatcg
     1201 atggaatggg ttttcgaaaa ataccgcacg gcgtcgagtt tcgcggcaag acgcgcttca
     1261 atcgtcaagc ttggcaagtc gggccagcga ttgtgcagac cgccttcggg cacgacgaat
     1321 ccctccggcg cgggccacac ggtctggaac ccgtcgaggt ccacagtcga gccggattcc
     1381 accgtctccg atatcgcctt gtaccccacc catgcgcccg aaaaacgcga caacgcccag
     1441 ccgtagagac cgaactcgag catatcggcg atgttcgacg ggttcaccac cggcatgtgc
     1501 caggcgatca tcgcctgatc ggactgatgg ggcatggacg acgacacgca gccgtgatcg
     1561 tcgcccgcca ccaccagcac gccgccgtgc ggcgacgaac cgtacgcatt gccgtgcttg
     1621 agggcatcgc cggcgcggtc gacacccggg cccttgccgt accacatcgc aaagacgcct
     1681 tccacagtc
//
LOCUS       DATGBK010001108         3692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_151768, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001108 DATGBK010000000
VERSION     DATGBK010001108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3692
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151768"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VKJ77_15440"
     CDS             complement(<1..207)
                     /locus_tag="VKJ77_15440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46711.1"
                     /translation="MSMQKQALGVMGVMATLLISTAAHAQSAGDVVVNLGWFHLAPQD
                     SSKPLTVSALGTSTTETGTGASVDG"
     gene            763..1617
                     /locus_tag="VKJ77_15445"
     CDS             763..1617
                     /locus_tag="VKJ77_15445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46712.1"
                     /translation="MVTETSSSDSLAVAQRVRDLMNRHGIGKRQQTAELCRILDLSFS
                     QGHRKLRGNSPWTLAQIRRVADAFDEPALQLFDAKNADVDDTEGAAQDAVLMLGAIEV
                     PCVAWIGEALEPGSRPDFIAQNMNGRWLVTTHEGVLLHAAHDVHKIEIQPRRTDMDKP
                     LIAVVDDDQTSADNLHDYLERSGFTAVALYGLEGFSQALQTQVFDAVVIDWLFGAHTS
                     ADAIRAVRNSDNPDAPIFVLTGELTTGKASESEISDIIQRYNVTCFEKPARMAILVAD
                     LSKRLQRA"
     gene            complement(1661..3469)
                     /locus_tag="VKJ77_15450"
     CDS             complement(1661..3469)
                     /locus_tag="VKJ77_15450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC46713.1"
                     /translation="MMRGPLRRFKIAMLVAAAIAPPLGGVGYVLYSVLLANQTVQQLT
                     MPYDGFYWDGAQFQIAYGRFANQILLYRSGIDADTDEIQLRFEVLESKLAIVTASTAM
                     LSDHGSLRNRQQEILRQLEAALESIDPDIDSLKRDPGRTLKIIGVLRQNQDAVNELAN
                     GRRVVDVAERDYIARDFVSKRRYLFAAGMLLALLSMVATAMLLLNGYRRSRLIHQQRA
                     ALEAQHQATRAAREASQAKDAFLGMISHELRTPLHAIVSSVELLELNLHSESDRKIIQ
                     RLETGARHLEAQMRDLTDFARLGAGKLELRLTVFDPMELLESIVDANTPAAVGKGLAL
                     RGQFAGEAGLVESDQHRLRQIVTNLVTNAIKYTDSGSIDVRFERSLERLDISVIDTGP
                     GIAREQLPLIFKEFTQLDSSTTRRFDGAGMGLAVVRGLVELLGGVVNVSSDVGQGAAF
                     RVSLPAAPVARMPERERAPADLPPLKKARVLVIDDHDSIRESLKEMLAHLGYTSVAMP
                     DVDSALAWLENNQADVILADLHMPGKDGYSFVNEYRARREAGASLPVIAVSAYAPDLV
                     DPSAAILFFDYLLKPVRYEVLKNALARALSATRRIH"
     gene            complement(3466..>3692)
                     /locus_tag="VKJ77_15455"
     CDS             complement(3466..>3692)
                     /locus_tag="VKJ77_15455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007743660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HMC46714.1"
                     /translation="IELRTIDDYSYTVSAREAERYGAILAYSMNGVRLTVSKFGPLFL
                     IYPRDAYPSELSGSAAEAKFVWQIKGMVVK"
BASE COUNT          743 a         1188 c         1052 g          709 t
ORIGIN      
        1 gccgtcgacc gatgctcccg taccggtttc ggtcgtgctc gtgccaaggg cactgaccgt
       61 cagcggcttg ctcgaatcct gcggcgccag atgaaaccag ccgaggttca ccacgacgtc
      121 gcctgcgctc tgtgcatgag cagccgtact gatcaacaac gtcgccatca cgcccatcac
      181 gcccaatgct tgtttctgca tgctcatgtc tcctccgttt tatccgatcc ggtcagtgga
      241 tctggagaag attctatgcg aacgatcgta cgaataattc cctctgcgct ggagcaataa
      301 ttctggaatc tggtaagaat ccgaaaccga attgctgcgc gctcacctat aggccccagc
      361 gcgatcgcca ccctggcgag cgttctggca tcgcacgtcg aaagtggcgt gaacaacgtg
      421 ggacggtcgt ggtccagaga gcgcatctca tcgaatgatg atttacgcgg gcggtcaaat
      481 atcccgagtg cccggtcgac ccgttttata ttgcttcggg cggcttcatg ccgctatctg
      541 atgcgagaga acgtttgctg ggcgcgaatc gatcaacagt tcgaatgggc tcttgtgttc
      601 gcaaccggta acaacctccc ggtcccttgc aagagcggcg tttatcttcg caagagttct
      661 tcgaaccagc cctctcttac gcctacaata ccccccggtc catcccgaat cagcctcacc
      721 gtcttcaaac ccgccacgcg cttttactgg tcaacaggca gcatggtcac tgaaacctca
      781 tcctctgatt ccctcgcagt cgcccagcgc gtacgcgacc tgatgaatcg ccacggcatt
      841 ggcaagcggc agcagaccgc cgagctttgc cgcatcctcg acctcagctt ctcgcagggg
      901 catcgaaaac tccgtggcaa cagcccttgg acgctcgcgc aaatccgccg cgtggccgac
      961 gcgtttgacg agcctgcgtt gcagctcttc gacgcgaaga acgccgacgt agacgacacc
     1021 gaaggcgccg cccaggatgc cgtgctgatg cttggcgcta tcgaagttcc ctgtgttgca
     1081 tggattggcg aagcgctcga accgggcagc cgcccggatt tcattgcgca aaacatgaac
     1141 ggccgctggc tcgtgacaac gcacgaaggt gtgctgctgc acgccgctca cgatgtccac
     1201 aagatcgaga tccagccgcg tcgcacggac atggataaac cgctgatcgc ggtcgtggac
     1261 gacgatcaga cctcagccga caacctgcac gattatctcg agcgcagcgg tttcacagcg
     1321 gtcgccctgt atggtctgga ggggttctcg caagcgctgc agacgcaagt gttcgatgcg
     1381 gtggtgatcg actggctgtt cggggcgcat acctccgccg acgctatccg cgccgtgcgc
     1441 aactccgaca acccggatgc gcccatcttc gtattgacgg gcgaactgac gaccggcaag
     1501 gcaagcgagt cggaaatcag tgacatcatc cagcgctaca acgtcacatg cttcgagaaa
     1561 ccggcgcgca tggcgatcct ggtggccgat ctgtcgaagc gcttgcagcg agcctgactc
     1621 tgactgtcac tcgacgccgc atcgacgcca cgtgcaccac tcaatgtatc cgccgtgtcg
     1681 ccgataacgc ccgcgccaag gcgtttttca gcacttcgta gcgcacgggc ttgagcaggt
     1741 aatcaaagaa caggatggcg gcgctagggt cgaccagatc cggcgcatag gcactcaccg
     1801 cgatcacggg caagctcgcg cccgcttccc gccttgcacg gtactcattc acgaacgagt
     1861 acccgtcctt gcccggcatg tgcaggtcgg cgaggatcac atcggcctga ttgttctcga
     1921 gccacgcgag cgcgctgtcc acgtcgggca ttgccacgct cgtataaccc aggtgcgcca
     1981 gcatttcctt cagcgactcg cggatagaat cgtggtcgtc tatcaccagc acgcgtgctt
     2041 tcttcaacgg cggcaagtct gcgggcgcac gctcgcgctc gggcattcgc gctaccggag
     2101 cagcaggcaa actcacgcga aacgcggcgc cctgaccgac gtcactcgac acgttgacca
     2161 caccccccaa caattcgacc agcccgcgca cgaccgcgag ccccatgccg gcgccatcga
     2221 aacgccgggt ggtcgatgaa tcgagctgcg tgaattcctt gaagatcagc ggcaactgtt
     2281 cgcgcgcaat gccgggaccg gtatcaatga cagagatatc aagccgttcg agcgagcgtt
     2341 cgaaacgaac atcgatcgaa ccggaatcgg tgtacttgat cgcgttcgtc accaggttgg
     2401 tcacgatctg ccgcagccgg tgctggtccg attccaccag gcccgcctcg cccgcgaact
     2461 gtccgcgcaa cgccaggccc ttccccacgg ccgccggtgt atttgcgtcc acgatggact
     2521 cgagcaattc cattggatcg aatacagtca gccgcaattc aagcttgccg gcgccgagcc
     2581 tcgcgaagtc ggtcaggtcg cgcatctgtg cctcaagatg gcgtgcgccg gtttcgagcc
     2641 gctgaatgat cttgcgatcg ctttcgctat gcaggttcag ttcgagcagt tccaccgacg
     2701 acacaatggc atgcaacggc gtgcgcaact cgtggctgat catgccgagg aacgcgtcct
     2761 tcgcctgcga cgcttcgcgc gccgcgcggg ttgcctgatg ctgtgcttca agcgccgcgc
     2821 gttgctggtg aatcagccgc gagcgccggt agccgttgag cagcagcatg gcggtggcga
     2881 ccatggaaag cagcgcgagc agcatgcccg ctgcgaacag gtaacgccgc ttcgaaacga
     2941 aatcacgcgc aatgtagtca cgctccgcca cgtcgaccac gcggcgtccg ttggccagct
     3001 cgttgactgc atcctggttc tgccgcaata cgccaatgat cttcagcgtg cgcccggggt
     3061 cccgcttcaa tgaatcaata tccgggtcga tggactcgag cgccgcttcc agttgccgca
     3121 agatttcctg ttggcggttt cgtagggagc cgtgatcgga aagcatcgcg gtagaagcgg
     3181 tcacaatggc gagcttcgat tcaagcacct cgaagcggag ctggatctcg tcggtatcgg
     3241 catcgatccc gctgcgatac aacagaatct ggttcgcaaa gcggccgtac gcaatctgga
     3301 attgcgcgcc gtcccagtag aaaccgtcgt acggcatggt gagttgctgc acggtctggt
     3361 tcgccagcag gacggaatac agcacgtagc ccacgccgcc aagcggcggc gcaatggctg
     3421 ccgcaaccag catcgcaatc ttgaaacggc gaagcggccc acgcatcatt tcacgaccat
     3481 ccctttgatc tgccacacga acttcgcctc cgcggccgag ccactcaact cggacggata
     3541 cgcgtcgcgc ggatagatca ggaacaacgg accaaatttg ctgacggtga ggcgcacgcc
     3601 gttcatgctg tacgcgagaa tcgcaccgta acgctcggct tccctcgcgc tcaccgtgta
     3661 ggaataatcg tcgatcgtgc gcagttcgat gc
//
LOCUS       DATGBK010001109         3030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_337039, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001109 DATGBK010000000
VERSION     DATGBK010001109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337039"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..586
                     /locus_tag="VKJ77_15460"
     CDS             <1..586
                     /locus_tag="VKJ77_15460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006754062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alginate export family protein"
                     /protein_id="HMC46715.1"
                     /translation="LRYTGKAGQVDWDVETMLQSGHVGNSTIGAWALGSLAGYTFNDV
                     PGTPRAGIQIDAASGDRHPGDGRIGTFNPLFPNGYYFTLAGYTGYSNLIHVKPSITLK
                     PASNLSLLAAVGFQWRETTADAVYAQGSVPVTGTAGHGSLWTGMYVQLRADWTIAANL
                     IGSVEAVHFQVGDAIRAVGGSNADYIGVELKYGW"
     gene            complement(603..1511)
                     /locus_tag="VKJ77_15465"
     CDS             complement(603..1511)
                     /locus_tag="VKJ77_15465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46716.1"
                     /translation="MKLSFEVLEALDAIDRTGTFAEAAELLHRVPSSLSYLVQKLESD
                     LDVALFDRTGRRARLTHAGRVVVEDGRRLLLAAEQLEQRAQRIQEGWEAELRICIDEI
                     LPLDAFWPYVHAFYDLKMDTRLRLSREVLGGTWDALVTRRADLVVGAAGEPPHLPHLV
                     ARPVGSLRHVFVVAPDHPLADLPEPLGIDTVTCYRGAVISDTSRELRPRSVATATTQE
                     SITLPTLSAKLAAQCEGVAVGTIPECLAAKPIAEGKLVPKRVTGMREVTDCYLAWRDD
                     ETGRALRWWVEQLDQADLIDRFIARI"
     gene            1765..2730
                     /locus_tag="VKJ77_15470"
     CDS             1765..2730
                     /locus_tag="VKJ77_15470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46717.1"
                     /translation="MDLFISMEAFVRAAEAQSFANAARQLGVAKSVVTSRIKQLEEHF
                     NVALFHRSTRAVRLSEVGESYYRDCAQLVNKVHELSGRTSAETHSLSGTLNVHVLPGF
                     ALGHFSHALIAFREAHPRIEFVVTVNDRVIDPVQEGFDLALQIYPPASNLLVERKLFP
                     VRGVLCAAPAYLKEEPVIETPLDLVRHDFARYSYYPWGDNWPLMKGNECFEIALNPVL
                     KTNSVHLLLEFARAGAGVAYLPTMVAAADLLERRLIRVLPEYAAPPLWLSAVYPASHR
                     STTKVKAFVEFLRARYLREPQWDRALGISPPDDETKNVGDELGDA"
     gene            2906..>3030
                     /locus_tag="VKJ77_15475"
     CDS             2906..>3030
                     /locus_tag="VKJ77_15475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyquinol 1,2-dioxygenase"
                     /protein_id="HMC46718.1"
                     /translation="MQETYLGSLGNYRKGSIEIIKGKPGHYAMSNVFEVASHAAP"
BASE COUNT          573 a          930 c          924 g          603 t
ORIGIN      
        1 cctgcgttac accggcaagg ccggacaggt ggactgggat gtcgagacaa tgctgcaaag
       61 cgggcacgtc ggcaacagca cgatcggtgc gtgggcgctc gggtcgctgg caggttatac
      121 cttcaacgac gtcccgggga cgccgcgcgc gggcattcag atcgatgcag cgtcgggcga
      181 tcgtcatccg ggcgatggcc ggatcgggac gttcaatccg ctgttcccca atggatacta
      241 tttcacgctg gccggttata ccggctacag caacctgatt cacgtcaagc cgagcatcac
      301 gttgaagccg gcgagcaacc tgtcgttgct ggcagccgtc ggcttccagt ggcgagagac
      361 cacggccgat gccgtgtatg cacaaggctc cgtgcctgtg acaggaacgg ccggccacgg
      421 cagcctgtgg accggcatgt atgtgcaatt gcgcgcggac tggactattg cagcgaacct
      481 gatcggctcg gttgaggcgg tgcatttcca ggtcggcgat gccatccgcg cggtgggcgg
      541 cagcaacgcc gactatattg gcgtggagct taaatacggg tggtaagcac tggggtacgt
      601 acttaaatgc gcgctataaa acgatcgatc agatcggcct gatccagttg ctcgacccac
      661 cagcgcagcg cccgtccggt ttcatcgtcg cgccatgcga gataacagtc agtgacttcg
      721 cgcatgccgg tcacgcgctt gggcacgagc ttgccttcgg cgatcggttt cgcagcgaga
      781 cactcaggaa tggtgcccac ggccacgccc tcgcattgag cggcgagctt ggcgctgagc
      841 gtgggcagcg tgatggattc ctgcgtggtc gcggtggcga ccgagcgcgg tctcaactcg
      901 cgcgatgtat cgctgatcac cgcgccgcga taacacgtga cggtatctat tccaagcggc
      961 tcgggaaggt ccgcaagcgg gtgatcgggc gcgaccacga acacatgccg cagcgatccg
     1021 accggccgtg ccacgagatg aggcaggtgc ggcggctcgc ctgccgcgcc gaccacaaga
     1081 tccgcgcggc gcgtgaccag tgcgtcccag gtgccgccga gcacttctct cgacagacgc
     1141 agccgcgtat ccatcttcag gtcgtagaac gcgtgtacat agggccagaa agcatcgagc
     1201 ggcaggatct cgtcgataca gattcgcagc tccgcttccc agccttcctg aatgcgttgc
     1261 gcccgctgtt ccagttgctc ggcggccagc agcagccgcc tgccgtcctc gaccacgaca
     1321 cgtcccgcgt gcgtgagcct tgcgcgcctc ccggtgcgat cgaacagcgc gacgtcgaga
     1381 tcgctttcga gcttctggac gaggtaactg agtgacgacg gcacccggtg cagcaactcg
     1441 gctgcttcgg cgaacgtgcc ggtgcggtcg attgcgtcca gcgcttcgag gacttcgaat
     1501 gacagcttca ttttagcttt ccactttgta atctggatga ggatacgctt ggcgcgttat
     1561 ccggtgtgtc tggaatgtcg atttgaatcg atcgttgatt ggctgtgtat ttgactgtct
     1621 atgtaaccgg aatgcggtgg cgtgtgcagg ctttaagatc aattcaggtc gtgtgtgccg
     1681 gtctgcatgc tgccgtgccg ccgccaaaga aactagaatc tccagtagac aacagcggtt
     1741 cagacaaaac gatcaggaga cagcgtggac cttttcatat cgatggaagc gttcgtgcgc
     1801 gccgccgaag cgcaaagctt cgcgaacgcg gcacggcagc tcggtgttgc aaagtcggtc
     1861 gtgacgtcgc gcatcaagca gcttgaagag catttcaatg tcgcgctctt tcatcgctcc
     1921 acgcgggccg tgcgtttgtc cgaagtgggt gagtcgtatt atcgcgactg cgcccagctc
     1981 gtcaataaag tccacgaact ctccggccgt acgagcgccg aaacacactc gctcagcggg
     2041 acgctcaacg ttcacgtgct gcctggtttc gcgctgggtc acttttcgca cgcgttgatc
     2101 gcctttcgcg aggcgcatcc tcgtatcgaa ttcgtggtga cggtcaacga tcgcgtgatc
     2161 gatcccgtgc aggaaggctt cgacctggcg ttgcagatct acccgcccgc gtcgaacctg
     2221 ctggtcgaac gcaagctctt cccggtgcgt ggcgtgctgt gcgcggcgcc cgcttacctg
     2281 aaggaggagc ccgtcataga aacgccgctc gacctcgtac ggcatgattt cgcgcgttat
     2341 tcgtattacc cgtggggcga caactggccc ctcatgaagg gcaacgaatg tttcgagatc
     2401 gcactcaatc cggtgctcaa gacaaacagc gtgcacctgc tcctcgaatt cgctcgcgcg
     2461 ggtgctggcg ttgcctatct gccgaccatg gtggccgccg ccgacctgct cgaacggcgt
     2521 ctcatccgtg tgctccccga gtatgctgca ccgccgctat ggctctcggc ggtctatccg
     2581 gcgtcccaca ggtcgaccac aaaagtgaag gcgttcgtcg agttcctgcg tgctcgctac
     2641 ttgcgcgaac cgcagtggga ccgggcgctc ggtatctcgc cgcccgatga cgaaaccaag
     2701 aacgtcggcg acgaactcgg cgacgcatga gcggggtccc cgcgacgcag cctgctcctc
     2761 agtactttcc ctagcgtgtt ttgtgagcac gtagggttcg ccaaacgcga acctcaatcc
     2821 attgccccgt tgcgcgcgcg gccctaatct tcgttccaag gcaacgcgat cacaaccgtc
     2881 tttcacgaaa gcaatggaga cagacatgca agagacctat ctcggcagcc tcggcaatta
     2941 ccgcaagggc tccatcgaaa tcatcaaggg caaacccgga cattacgcca tgtccaatgt
     3001 attcgaggtt gccagccacg cggcgcccta
//
LOCUS       DATGBK010001110         1686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_59910, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001110 DATGBK010000000
VERSION     DATGBK010001110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59910"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1107
                     /locus_tag="VKJ77_15480"
     CDS             <1..1107
                     /locus_tag="VKJ77_15480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007743513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC46719.1"
                     /translation="SGSVSWELDLWGQIRREIEQAKANAQSSDAQLAGERISITASVV
                     TDYFQLRQADFDIHALKEQQDIDNRILSMTQTAFRVGEASNDDVLNAQQNLETIIADL
                     QATETTREQDEHAIAVLTGTSPASLDIASDPNYPFMVPAVPPALPSQLLERRYDVVSA
                     ERTAAAANAGIGLAEAAFYPSLTLSAEGGFAHNTLAHLFTVPSRFWTLGPQLAETIFD
                     GGARTAAVRGARATYDEDVANYRNTVLTAFHSVEDSLSSMNHLQAQASAFAKVYDSNS
                     RLFASEQAQFDAGAVSQQNLLTQRLTLIQAEQSLRDTQALLAESNVLLVKNLGGGWQR
                     DDAEIASVPAAASSSALSPTSQAPARPASEAAAD"
     gene            1183..>1686
                     /locus_tag="VKJ77_15485"
     CDS             1183..>1686
                     /locus_tag="VKJ77_15485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC46720.1"
                     /translation="MKSRSQRSALSYLCLIVLAACSKSAPPPPPAQVAVVKAQSQSVP
                     LERQFVGRLSPYYSANVTARVSGVLLRRNYTEGSQVRAGQLLFEIDPVFYRAQLNNDL
                     ALLAEDQATYVNDHITALRNRKLLPVGSVSQQTVDNSDAAERSAAAKVKADEATVASA
                     RVSLNYTR"
BASE COUNT          324 a          555 c          530 g          277 t
ORIGIN      
        1 agcgggagcg tcagttggga actggacctg tggggacaga tacggcgtga gatcgagcag
       61 gcgaaagcga acgcccagtc atcggatgcg cagcttgccg gtgaacgcat ctcgatcacc
      121 gccagtgtcg tgactgacta cttccagctg cgccaggccg acttcgacat tcacgcgctg
      181 aaggagcagc aggacatcga caaccggatt ctctcgatga cgcaaactgc gttcagagta
      241 ggtgaagcgt cgaacgacga cgtgctcaac gcgcagcaga acctcgaaac gatcatcgcc
      301 gacctgcagg cgaccgaaac gacacgcgag caggacgagc atgcaattgc cgtgctgacc
      361 ggcacctcgc cggcgtcatt ggacatcgcg tccgatccga actatccctt catggtgcct
      421 gccgtgccgc cggccctgcc ttcacaactg ctcgagcggc gctacgacgt ggtaagtgcc
      481 gagcgcacgg cggcggcggc caacgcgggc atcggccttg ccgaagccgc gttctatccg
      541 tcgctgacgc tctcagccga gggcggtttc gcacacaaca cgttggcgca tctgttcacc
      601 gtgccgagcc gcttctggac gctcggcccc caactcgcgg aaacgatttt cgacggcggc
      661 gcacgcacgg ccgcggtgcg cggagcgcgc gcgacctacg acgaagacgt cgcgaactac
      721 cgcaatacgg tgctgacagc gttccatagc gtggaggata gcctgtcgtc gatgaatcac
      781 ctgcaggcgc aggcaagcgc gttcgcgaag gtgtacgaca gcaacagccg gctgttcgca
      841 agcgaacagg cgcagttcga tgccggggcg gtcagccagc agaacctgct gacgcaacgg
      901 ctgacattga tccaggcgga gcagagtctg cgcgacacgc aggcgctgct cgccgagagc
      961 aatgtgctgc tcgtcaagaa cctgggtggt ggctggcagc gcgatgacgc cgagatcgcg
     1021 tcggtgccgg ccgccgcttc atcgtccgct ttatcgccca cttcgcaagc gccagcgcgg
     1081 cctgcctcgg aggctgccgc cgactgactt aacggctgtt ccatacggtc cggcacgctg
     1141 cggagcacgc gcaagccgac ctcaagcaag aacggagttc tcatgaagtc acgttcccag
     1201 cgctcggcgc tgtcgtatct gtgtctgatc gtactcgccg cctgctcgaa aagcgcgccg
     1261 ccgcctccac ccgcgcaggt tgccgtggtg aaggcgcaat cgcaatcggt gccgcttgag
     1321 cgtcagttcg ttggccggct ttcgccttac tacagcgcga acgtaacggc ccgcgtgtcc
     1381 ggcgtgctgt tgcggcgcaa ttacaccgaa ggctcgcagg tgcgcgcggg gcaactgctg
     1441 ttcgagatcg atccggtctt ctaccgcgcg cagctcaata acgacctcgc gttgctggcc
     1501 gaggatcagg ccacctacgt caacgatcac atcacggcct tacgcaaccg caagctgctg
     1561 ccggtcggtt cagtctcgca gcagaccgtg gacaattccg atgccgccga acgtagcgcc
     1621 gcagccaagg tcaaggccga cgaggcgacc gtcgcgagcg cgcgggtctc gctcaactac
     1681 acgcgc
//
LOCUS       DATGBK010001111         1501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_128803, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001111 DATGBK010000000
VERSION     DATGBK010001111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128803"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VKJ77_15490"
     CDS             complement(<1..680)
                     /locus_tag="VKJ77_15490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011661090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036361 - racemase activity, acting on
                     amino acids and derivatives [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HMC46721.1"
                     /translation="MREKHKQGRRSFGVIGGLGPLASADLFFKLVKSTPATGDADHFD
                     IVFEQHPFRGAGATSAATVERKLYIFDLIRAFEKRGIETVVLPCFLSHTFMDELKANS
                     PLQIVDMIEALRHHVRRKFPSVRRIGVLASDYTRHNGLFERYFLAPEFDVIHPRIDGS
                     TDLVTHAVYGENGIKSGHLLGQPVALLKAACDDLIAQGAEIIVPGMTEIALVADELGV
                     ELRTFGVPL"
     gene            complement(677..>1501)
                     /locus_tag="VKJ77_15495"
     CDS             complement(677..>1501)
                     /locus_tag="VKJ77_15495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006158762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HMC46722.1"
                     /translation="ILQILVFSVLFGVVLGAIKPDPRVTPLVQAIDALVPAMLKLTDY
                     VMRLAPVGVFGAIASAVTLHGLDVLMTYGKLIGSFYVGLVLLWAVLIGAGYAFLGNAI
                     WSLLKAVREPAMLAFSTASSEAAYPRLTEKLEEFGVDKKVVGFTLPLGYAFNLDGSMM
                     YQAFAAIFIAQAFGIDMPVGTQILMLLVLMISSKGMAGVARGSVVVVAAVAPMFHLPP
                     SGVVLILAIDQILDMGRTATNVIGNSIATAVIAKWETARVTRTEAVTFDQLQGEAK"
BASE COUNT          329 a          446 c          445 g          281 t
ORIGIN      
        1 agcgggacac cgaacgtgcg tagttcaacg ccgagctcat ctgcaacgag cgcaatctcg
       61 gtcatgccag gcacgatgat ctccgcgcct tgcgcaatga gatcgtcgca agcggctttt
      121 agcagcgcaa ccggctgacc caacagatgg ccggatttga tgccgttttc cccatacacg
      181 gcatgcgtaa cgaggtccgt gctgccatcg atgcgaggat gaatgacgtc gaattcaggc
      241 gccaaaaaat agcgttcgaa gagaccgttg tgccgcgtat agtccgatgc cagcacgcca
      301 atgcgacgta cggaagggaa cttgcgccgc acgtgatgtc gcaacgcctc gatcatatcc
      361 acgatctgca gaggcgagtt ggctttcaac tcgtccatga aggtgtggct caggaagcag
      421 ggcagcacga cggtctctat gccgcgtttc tcgaatgcac gaatgaggtc gaagatgtag
      481 agcttgcgtt ccaccgtcgc ggcgctggtg gcgccggcgc cgcgaaacgg atgctgctcg
      541 aagacgatgt cgaagtgatc cgcgtcgccg gttgcgggcg tcgatttgac gagcttgaaa
      601 aacaggtcgg cgctggcgag tgggccaagg ccgccaatga cgccaaaaga gcggcgtccc
      661 tgcttgtgct tctccctcat ttcgcttcgc cttgcaactg atcgaaggtc acggcttctg
      721 ttcgcgtgac ccgagccgtc tcccactttg cgatcacggc cgttgcaatg ctgttgccga
      781 tgacgttggt cgctgtccgg cccatgtcga gtatctggtc gatcgcgagg atcagcacga
      841 cgccggacgg aggcagatgg aacatcggcg caacggcggc caccaccacg accgagcctc
      901 gcgccacgcc ggccatgccc ttgctgctga tcattagcac gagcagcatc aggatctgcg
      961 tgcctacggg catatcgata ccaaaggcct gcgcaatgaa gatggcagcg aacgcctggt
     1021 acatcattga accatcgaga ttgaatgcgt atcccagcgg cagcgtaaag ccgaccacct
     1081 tcttgtccac gccgaattct tccagcttct ccgtcagacg cgggtatgca gcttcgctgc
     1141 ttgcggttga aaacgccagc atggcgggct cgcgtaccgc tttgagcaac gaccagatgg
     1201 cgttgccaag gaacgcgtaa ccggcgccga tcaggaccgc ccacagcagt accagtccaa
     1261 catagaagct gccgatcagc ttgccgtatg tcatcaaaac atcgagtcca tgcaaggtca
     1321 cagccgatgc aattgcgccg aatacgccca cgggtgcaag gcgcatgacg tagtcggtga
     1381 gcttgagcat ggcgggaacg agggcgtcga tcgcttgtac gagcggcgtc acccttgggt
     1441 ccggcttgat cgcacccaac acaacaccga agagcacgga gaacaccaga atttgcagga
     1501 t
//
LOCUS       DATGBK010001112         1838 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_314149, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001112 DATGBK010000000
VERSION     DATGBK010001112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314149"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..147)
                     /locus_tag="VKJ77_15500"
     CDS             complement(<1..147)
                     /locus_tag="VKJ77_15500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069441.1"
                     /note="regulates several genes involved in high affinity
                     phosphate uptake; under conditions of high phosphate
                     concentrations downregulates the PHO regulon; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate transport system regulator PhoU"
                     /protein_id="HMC46723.1"
                     /translation="MSDEHLSSQFDADLNAVSSKVLEMGGLVESQIINAMQALNTFDM
                     EIVEA"
     gene            complement(226..981)
                     /gene="pstB"
                     /locus_tag="VKJ77_15505"
     CDS             complement(226..981)
                     /gene="pstB"
                     /locus_tag="VKJ77_15505"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HMC46724.1"
                     /translation="MKPKIEVNNLNFFYNKFHALKNINLRIPEHKVTAFIGTSGCGKS
                     TLLRTFNKMYALYPEQRAEGEILMDGNNLLDTSRDISLLRARVGMVFQKPTPFPMSIY
                     DNIAFGVKMFEQLSRSEMDDRVEWALTKAALWNEVKDKLQQSGYGLSGGQQQRLCIAR
                     GIAIRPEVLLLDEPCSALDPISTGRIEELIAELKDDYTVVIVTHNMQQAARCSDYTAY
                     MYLGELIEFGDTEKIFIKPSRKETEDYITGRFG"
     gene            complement(1138..>1838)
                     /gene="pstA"
                     /locus_tag="VKJ77_15510"
     CDS             complement(1138..>1838)
                     /gene="pstA"
                     /locus_tag="VKJ77_15510"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0035435 - phosphate ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HMC46725.1"
                     /translation="IDLFTQNTPPPNTDGGGLLNAIVGSLMLVLLATFIGTPLGILAG
                     VYLAEYGDKRWLASLTRFINDILLSAPSIVIGLFVYALVVAQMGRFSGWAGVIALALL
                     QIPIVIRTTENMLRLVPNALREAAFALGTPKWKMICSITLKASVSGIVTGVLLAVARI
                     TGETAPLLFTALSNQFFSWDMNQPVANLPVTIYKFAMSPFPQWQALAWAGVFLITLGV
                     LGLNILARTIFSKK"
BASE COUNT          384 a          553 c          508 g          393 t
ORIGIN      
        1 cgcttcgaca atttccatgt cgaacgtatt gagcgcctgc atggcgttga tgatctggga
       61 ctcgaccaga ccacccattt ccagcacctt cgatgacacc gcattcagat cggcgtcgaa
      121 ctggctcgac aaatgttcat cggacatatg tgctcctgaa gtcctttttt agcccgttat
      181 gactttgact tggcgacgag ttagccacaa cttcagccgc gccactcaac caaaccggcc
      241 agtgatgtag tcttccgttt ccttgcggga cggcttgatg aagatctttt ccgtatcgcc
      301 gaattcaatc aattcgccca gatacatata agcagtgtag tccgaacaac gcgccgcctg
      361 ctgcatgttg tgcgtgacga tcaccaccgt gtaatcgtcc ttcagttcgg cgatcaattc
      421 ttcaatgcga ccggtcgaga ttggatcaag cgcggaacac ggttcgtcga gtaacagcac
      481 ttccgggcga atagcaatgc cgcgcgcaat gcacaggcgc tgctgttgtc cacccgacag
      541 gccatagccg ctttgctgca acttgtcctt gacctcgttc cagagcgccg ctttcgtcag
      601 cgcccattcc acgcggtcat ccatctccga gcgcgagagc tgctcgaaca tctttactcc
      661 gaacgcgatg ttgtcgtaga tcgacatcgg aaatggcgtc ggcttctgga acaccatgcc
      721 cacccgtgca cgcagcagcg agatatcgcg gctggtatcg agcaggttgt tgccgtccat
      781 caggatctcg ccttccgcgc gctgctccgg atacagcgcg tacatcttgt tgaacgtgcg
      841 cagcagcgtg gacttgccgc accccgacgt accgatgaac gccgtcacct tatgttcagg
      901 aatccgcagg ttaatgttct tcagcgcatg aaacttgttg tagaagaagt tgaggttgtt
      961 cacctcgatc ttcggtttca tcgatccaac cggcggcgcc tgatgggccg gcttgaagct
     1021 gccgggtact gcaccgcgct caaccgggct tgtgctggag tggtcaccgc tgccggccgg
     1081 attagcgttc cgggcgctca catcgcttgc gactgtgttc atggaatgat ttccgcctta
     1141 ttttttcgag aagatcgtgc gtgccaggat gttcagaccg agcacgccta gcgtgatcag
     1201 gaacacgccg gcccacgcga gcgcttgcca ttgggggaac gggctcatcg cgaacttgta
     1261 gatcgtgacg ggcaggttcg ccaccggttg attcatgtcc cacgagaaga actggttgga
     1321 cagcgccgtg aagagcagcg gcgcggtttc gccggtgatg cgtgcaacag caagcaagac
     1381 acccgtcacg atgccgctga ccgacgcctt cagcgtgatc gaacaaatca ttttccactt
     1441 cggcgtgccg agcgcgaagg cggcttcacg cagcgcgttc ggcaccagtc gcagcatgtt
     1501 ctcggtcgtg cgaatcacga tggggatctg cagcaacgcc agcgcgatca cgccggccca
     1561 gccgctgaat cggcccattt gcgcgaccac cagcgcatac acgaacaagc cgatcacgat
     1621 cgacggtgcc gacaacaaga tgtcgttgat gaaacgcgtc aagctcgcga gccagcgctt
     1681 gtcgccatat tcggcgagat acacgcccgc aagaattcca agcggcgtgc cgatgaacgt
     1741 cgcgagcagc acaagcatca ggctaccgac aatcgcgttc agcaaaccac cgccatcggt
     1801 attaggcggg ggcgtgttct gcgtgaacag atcgatcg
//
LOCUS       DATGBK010001113         1770 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_337046, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001113 DATGBK010000000
VERSION     DATGBK010001113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337046"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VKJ77_15515"
     CDS             <1..286
                     /locus_tag="VKJ77_15515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46726.1"
                     /translation="PNAARRSLLSHFNQSVAWPAMSQNIPLSAFIAHLVSHIGLDINV
                     NLTSEASHLLKRQFPTIEHLINERTSGNDVIGYPGSEAQLPEQQTSALSK"
     gene            283..>1770
                     /locus_tag="VKJ77_15520"
     CDS             283..>1770
                     /locus_tag="VKJ77_15520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46727.1"
                     /translation="MNQIAPLLELNKLAVSFGGRPAVRPIDLSIKHGEMLALVGESGS
                     GKSTIALAAMGLLPAQAQVEGSIRFEGQPLLTLREREWSALRGNRIGMIFQEPMTSLN
                     PLQPVGRQVAEALTLHRPMSFSAARKQALELLDLVRLPEPALRFDHYPHQLSGGQRQR
                     VMIAIAVACRPSLLIADEPTTALDVTIQAQILELIDQLRRELSMAVLLITHDLGVVAR
                     WADRVIVMKDGTKVEEADSATLFAHPSQPYTRALLGASLHFGAGLHYRDGRLTETISE
                     RLPATNATANPDPRILLELTGLQVDYPGAGRAVRAVDGVSFNIRAGETVGLVGESGCG
                     KSSLSRALTRLLEPSAGSIVFDGDDVTHRRRRALRPYRRRVQMIFQDPYGSLNPRHTV
                     ERTLGLALAIHGVSQRRERETKIRRIVDAVGLPSSALHRYPHEFSGGQRQRIGIARAL
                     VLEPELVICDEPVSALDVSIQAQILDLLADLKAELGLALLFISHDL"
BASE COUNT          345 a          561 c          515 g          349 t
ORIGIN      
        1 gcccaacgcg gcaaggcgat cgctcctctc tcatttcaat cagtccgtcg cgtggcctgc
       61 catgagccag aacatccctc tgagcgcttt catcgcgcat ctcgtcagcc atatcggcct
      121 cgacattaac gtaaacctga cttctgaagc gtctcatctg cttaagcgac agtttccgac
      181 tatcgagcat ctcatcaatg aaagaaccag cgggaacgac gtgatcggct atcccggcag
      241 cgaggcgcaa ctgccagaac aacagaccag cgcactgtcg aaatgaacca gatagctcca
      301 ctgctcgaac tgaacaagct ggcggtttcg ttcggcggac gtccggccgt tcgccccatc
      361 gatctctcca ttaaacacgg cgaaatgctg gcgctggtcg gtgaatcggg cagcggcaaa
      421 tcgacgatcg cattggctgc aatgggactt ctgccggcgc aagcgcaggt agaaggatca
      481 atacgcttcg aaggtcagcc cctgctcacg ctgcgagagc gcgaatggag cgcgttgcgg
      541 ggaaaccgca tcggcatgat tttccaggag ccgatgacgt cgctcaaccc gcttcagcca
      601 gttgggcggc aggtcgccga agcgctgacg ctgcatcggc cgatgtcgtt ttcagcggcg
      661 cgcaaacagg cgcttgagct tctggatctc gtgcgtctgc ccgagccggc actgcgcttc
      721 gatcattatc cgcatcagct ttccggcggc cagcgacaac gcgtgatgat cgcgatcgcg
      781 gtagcgtgcc gtccgagcct gttgattgcc gacgaaccca cgaccgcgct cgacgtcacc
      841 atccaggcgc aaattctcga actgatagac cagttgcgac gcgagttgtc gatggcggta
      901 ttgctgatca cgcacgacct cggtgtcgtc gcgcgctggg ctgaccgcgt gatcgtgatg
      961 aaggacggca cgaaagtgga ggaagccgat agcgcgacgt tgttcgcgca tccttcgcag
     1021 ccgtacaccc gtgcgctgct tggcgcgtcg ctgcacttcg gtgcgggact gcattatcgc
     1081 gacggccgcc tgaccgaaac gatcagcgag cggctgcccg ccacaaacgc aacagcgaat
     1141 cccgacccgc gcatcttgct tgagctaacc ggcttgcaag tcgattaccc cggtgcaggg
     1201 cgtgccgtac gcgcggtcga cggtgtctcg ttcaacattc gagcaggcga gaccgtggga
     1261 ctcgtcggcg aatcgggctg cggaaagtca tcgctttccc gcgcgttgac gcgacttttg
     1321 gaaccgtccg ccggcagcat cgtattcgat ggcgacgacg tcacgcatcg ccggcgccgt
     1381 gcattgcgtc cgtatcgccg gcgcgtgcag atgatctttc aggacccgta cggctcgctc
     1441 aatccgcggc ataccgttga acgaactttg ggccttgctc tcgcgattca tggcgtgtcg
     1501 caacgacgcg aacgcgaaac aaaaattcgc cggatagtcg atgcggttgg cctgccctct
     1561 tcggcattac accgctaccc gcacgaattt tctggtggcc agcgacaacg gataggcatt
     1621 gcgcgagccc tcgtgctcga acctgaactt gtgatctgcg acgagccggt gtcggcgctg
     1681 gacgtatcca tccaggcgca aattctcgat cttctcgccg acctcaaggc cgaactcggg
     1741 ctcgccctgc tcttcatctc gcacgacctt
//
LOCUS       DATGBK010001114         2810 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_36995, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001114 DATGBK010000000
VERSION     DATGBK010001114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36995"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..270)
                     /locus_tag="VKJ77_15525"
     CDS             complement(<1..270)
                     /locus_tag="VKJ77_15525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HMC46728.1"
                     /translation="MLLALAQWLQNDASFLRVFTYLTFRAVGATITALFVGLVCGPWV
                     IRKLTSLKVGQAVRTNGPQTHLVKSGTPTMGGVLILLGIAFSTLLW"
     gene            complement(286..1698)
                     /gene="murF"
                     /locus_tag="VKJ77_15530"
     CDS             complement(286..1698)
                     /gene="murF"
                     /locus_tag="VKJ77_15530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HMC46729.1"
                     /translation="MTLFTLRDAALQIPGAIVIGDENVAFDRVSTDSRTAGPGDLFIA
                     IKGDRFDAHTFLPQVAQRGIAAALVTRTPDNFTVPAIKVKDTRVALGALAHGWRKRFT
                     IPLIAVTGSNGKTTVKEMIASILAAAVGENARLATAGNFNNDIGLPLTLFRLNETHKL
                     AVIELGMNHPGETETLGKIAAPTVAVVNNAQREHQEFMATVEAVALEHASVIHALAAN
                     GTAVFPADDKYASIWRVAATGNPILDFALHTDASQTEAAVIGKLVGATLEINTPQGSL
                     EVALQVLGEHNARNALAATAAALAANVSLNSVKRGLEAFEPVKGRLQVKRAVLKPIEG
                     ATVIDDTYNSNPDSMRAAIDVLASQPSPRVLVMGDMGEVGDQGPAFHREVGAYAAQRG
                     IDVLYALGDAGIDSSKAFGPTGQHFTDITSLIAALTGAGFGPDATFLVKGSRFMQMER
                     VVDAVTSPHQPAAGVTPAAH"
     gene            complement(1695..>2810)
                     /locus_tag="VKJ77_15535"
     CDS             complement(1695..>2810)
                     /locus_tag="VKJ77_15535"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008765 -
                     UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HMC46730.1"
                     /translation="TLGSGMPGKLVHSGFTTPDAPQLQRTFAQFKTDGAKAVAMEVSS
                     HALHQGRVNGTKFDIAIFTNLTQDHLDYHGTFAAYEGAKAKLFAWPALKAAVINRDDP
                     AGQRLIASGHGRTRTIAYGIENRAGAEVKADALLLASRVRPTATGTAFHLSSDWGDAD
                     VEVATLGDFNVSNLLGVLGALLAAQIPLDAALAQIAKLEPVNGRMQRLGGRLQNDEPL
                     VVIDYAHTPDALEKTLAALRPIAETRGGQLICMFGCGGDRDATKRPLMGAIAEKNADY
                     VVITSDNPRGEDPLAIIDQVAAGFQDASKARRIEDRASAILQAIRTAAREDVVVLAGK
                     GHEATQEIMGKKRAFSDQDHARLALAARATQARGGGE"
BASE COUNT          508 a          904 c          851 g          547 t
ORIGIN      
        1 ccagagcaag gtggaaaacg cgatgcccaa caatatcaac acgccaccca tggtcggcgt
       61 gccggatttc accaaatgcg tttgcgggcc gttcgtacgc acggcctgac cgaccttcag
      121 cgaagtcaat ttgcgaatca cccacggacc gcaaacgagg ccgacgaaca acgccgtgat
      181 cgtcgcgccg acagcgcgga acgtgaggta ggtaaacacg cgcagaaaac tggcgtcatt
      241 ctgaagccat tgcgcgagtg cgagtagcat gctggtcctt cttcttcagt gcgcagcagg
      301 cgtaacgccc gctgcgggtt ggtgtggact cgtcacggcg tccaccacgc gttccatctg
      361 catgaagcgc gagcctttca cgagaaacgt ggcgtcgggt ccgaagccgg cgccggtcag
      421 tgctgcaatg agtgaggtga tatcggtgaa atgctgtcct gtcgggccga aggctttgct
      481 tgaatcgatg ccggcatcgc cgagtgcata aagcacgtcg ataccccgtt gcgccgcgta
      541 agcacccact tcacgatgaa acgcggggcc ctggtcgccg acttcgccca tgtcgcccat
      601 gaccagcacg cgtggcgatg gttgcgacgc gagcacgtcg atagccgcgc gcatggaatc
      661 tggattcgag ttgtacgtat cgtcgataac agtcgcgcct tcgatcggtt tgagcacagc
      721 gcgcttcact tgcaggcggc ccttcaccgg ctcaaaagct tcgagcccgc gcttgacgga
      781 attgagtgaa acgttcgcgg caagagcggc ggccgtagcc gccaacgcgt tgcgcgcgtt
      841 gtgttcgccc agtacctgca acgcgacttc gagcgagcct tgcggcgtgt tgatctcgag
      901 cgtcgcgcca accagcttgc cgatcaccgc cgcttcggtt tgcgacgcgt ccgtatgcag
      961 cgcgaaatcc agaatcggat tgcccgtcgc ggcgacgcgc cagatgctgg cgtatttgtc
     1021 gtcggcgggg aaaacggccg tgccgttggc ggcgagtgcg tgaatcaccg atgcatgttc
     1081 cagcgccacc gcttccaccg tcgccatgaa ttcctgatgc tcacgttgcg cgttgttgac
     1141 gacagcgacc gtcggcgcgg cgatcttgcc gagcgtttcc gtttcgcccg gatgattcat
     1201 gccgagctcg atgaccgcca gcttgtgcgt ttcgttcaga cgaaacaacg tcaacggcaa
     1261 gccgatgtcg ttgttgaaat tgcccgccgt cgcgagccgc gcgttttcgc cgacagccgc
     1321 cgcgaggatc gacgcgatca tttccttgac cgtagtcttg ccattgctgc cggtgactgc
     1381 aatcagcgga atcgtaaagc gcttgcgcca gccgtgggcc aacgcgccga gcgccacacg
     1441 cgtgtccttg accttgatcg ccggcacagt gaaattgtcc ggcgtgcgcg tgaccaacgc
     1501 cgccgcaatg ccgcgctgcg ccacttgcgg caggaaagtg tgggcatcga aacgatcgcc
     1561 cttgatcgcg atgaacagat cacccggacc cgccgtgcgg ctatccgttg atacccggtc
     1621 gaacgcgacg ttttcatcgc cgataacgat cgcacccgga atctgcaacg cggcgtcgcg
     1681 tagtgtgaac agcgtcattc gccacctccg cgcgcttgcg tggcgcgagc ggcaagcgcc
     1741 aagcgtgcgt gatcctgatc ggagaaagcg cgctttttcc ccatgatttc ctgtgtagct
     1801 tcgtggccct tgccggccag cacgaccacg tcctcgcgcg ccgcggtgcg gatcgcctgg
     1861 aggatcgcgc tcgcgcggtc ttctatgcgg cgcgcttttg acgcgtcctg aaagcccgct
     1921 gcaacctgat cgatgatcgc aagcggatct tccccgcgcg ggttgtcgct ggtgatcacg
     1981 acgtaatccg cattcttctc cgcgatagca cccatcagcg gacgcttggt cgcatcgcga
     2041 tcgccaccgc agccgaacat gcagatcaac tgaccgccac gcgtttcggc gatcggccgc
     2101 agcgctgcca gcgttttctc gagcgcgtcc ggcgtatgcg cgtaatcgat caccaccagc
     2161 ggctcatcgt tctgcaaacg gccaccgagg cgttgcatcc gcccgttcac cggttcgagc
     2221 ttcgcgatct gcgcgagcgc ggcgtcgagc ggaatctgcg cagccagcaa tgcgcccagc
     2281 acacccagca ggttgctcac gttgaaatcg ccgagcgtcg cgacttctac gtcggcgtcg
     2341 ccccagtcgg aactcaggtg gaacgccgtg cccgtcgcgg ttgggcgaac gcggctggca
     2401 agcagcaacg cgtcggcttt tacttcggct ccggcgcggt tttcgattcc atacgcaatc
     2461 gttcgcgtcc tgccgtgacc ggatgcgatc aaacgctgac cagccgggtc gtcgcgattg
     2521 atgaccgcag ctttcaaagc cggccacgcg aacagcttcg ccttcgcccc ttcgtacgcg
     2581 gcgaacgtgc cgtgatagtc caggtggtcc tgcgtgagat tcgtgaagat ggcgatgtcg
     2641 aacttcgtgc cattcacgcg cccctgatgc aacgcatgcg acgacacttc cattgccacg
     2701 gccttcgcgc cgtcggtctt gaattgggca aacgtacgtt gcagttgtgg cgcgtccgga
     2761 gtcgtaaaac cagaatgcac aagcttgccc ggcatgccgc tgccgagcgt
//
LOCUS       DATGBK010001115         1535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_337069, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001115 DATGBK010000000
VERSION     DATGBK010001115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337069"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..1013
                     /locus_tag="VKJ77_15540"
     CDS             69..1013
                     /locus_tag="VKJ77_15540"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46731.1"
                     /translation="MDLKQLRYFLSIVESGSITRAAETLCIAQPALSLHIKNLEEELG
                     VRLFSRSVQGVKVTPSGELLYRHAKGLVRQADNTKLLLSQHARQPNGTVVVGMPHSTA
                     HLIAIDVVQALRAHYPGIILELTESSSSELYGLVLLGRVDLAVVVLDQPVRGLTRTPL
                     LNEQLFLIRHPDMATEIGATCSLIELARLPLVLISPPNIVRTKLDRAFAAAQLDYNLV
                     AVVNSTSMLVSWVERGVGATVLPWSAVHEQVTSGRLIATPLDGDEWQRDLWLCHAESL
                     PLTPAGEIVQGLIIEDVQRRLLPGAWLGARSLAALDEG"
     gene            1209..>1535
                     /locus_tag="VKJ77_15545"
     CDS             1209..>1535
                     /locus_tag="VKJ77_15545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013392412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC46732.1"
                     /translation="MALPLQGIKVLDLTRALAGPFCSMILGDLGADVIKVEPSPSGDM
                     VRTWGPFAGGISAYYLSCNRNKRGMAVDFRKPAALDLLRNMAISADVVLENFKTGTME
                     SMGLGYE"
BASE COUNT          285 a          438 c          486 g          326 t
ORIGIN      
        1 tggaaatatt gaattacgat ccatccatag tgtttttgtt atggacgatg aagttgaagg
       61 agtgatcgat ggacctgaag cagttgcggt atttcctgtc gatcgtggag tcggggagca
      121 tcacgcgtgc ggccgagacc ttgtgtatcg cgcagcccgc attgagcctg catatcaaga
      181 acctggaaga agaactgggc gtgcgcctgt tcagccgcag cgtgcagggc gtgaaggtga
      241 cgccgtcggg cgagttgctc tacaggcatg cgaagggcct cgtgcgtcag gctgacaaca
      301 cgaagttgct gctgtcgcag cacgcgcgcc agccgaacgg gacggtcgtg gttggtatgc
      361 ctcacagcac cgcgcacctg atagcaatcg atgtagtcca ggcgcttcgc gctcactacc
      421 cgggcatcat tctggagctg actgagagtt cgtcgtcgga actatacgga ctggttttgc
      481 tgggccgggt ggacctcgcc gttgttgtcc tcgaccagcc ggtacgcggg cttacgcgca
      541 cgccgttgct caacgaacaa ttgtttctca tccgtcaccc ggacatggcg actgagatag
      601 gcgcgacgtg tagccttatc gagctggcgc ggctgccgct ggtgctcatc agcccgccga
      661 atatcgtccg gacgaaactg gatcgggcct tcgcggcggc gcagctcgac tacaacctcg
      721 tcgcggtcgt caactccacg tccatgctgg tttcatgggt cgagcgaggc gtgggggcaa
      781 ccgtattgcc ctggtccgct gtgcatgaac aggtcacgtc cggccggctg attgcaacgc
      841 cgctcgacgg cgacgaatgg caacgcgatc tgtggttgtg tcacgcggaa tcgctgccgc
      901 tcacgccggc gggcgagatc gttcaggggc tgatcattga ggacgtgcag cgccgccttc
      961 tgccgggcgc atggctgggc gctcgcagtc tggccgcact ggacgaaggc tgaggcatcc
     1021 gttcaaacac gctggttttg cagccatatc ccggctcacc ggctccatac cgcaatgtga
     1081 ttgacctatc gtcaatctgt atttttcatc tgcgcggcgc ccgtctacct tgtgcgcttc
     1141 aatcgtatgc gggtcgatag aaacatcgac gaaacccgca ccgtcacaag tagatatccg
     1201 gaggggacat ggcattgccg ttgcagggaa tcaaggtgct ggatctgact cgcgcgctcg
     1261 cgggaccttt ttgttcgatg atcctcggcg atctcggggc tgacgtgatc aaggtggagc
     1321 cctcgccgag cggcgatatg gtcaggacgt gggggccgtt cgcaggcggt atcagcgctt
     1381 actacctttc gtgcaaccgg aacaagcgtg gcatggccgt ggattttcgc aaacccgctg
     1441 cgctcgacct gctgcgcaac atggccattt ccgccgatgt cgtcctcgaa aacttcaaga
     1501 ccggcacgat ggaaagcatg gggctcggtt acgag
//
LOCUS       DATGBK010001116         1787 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_13164, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001116 DATGBK010000000
VERSION     DATGBK010001116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13164"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1140
                     /gene="cbiE"
                     /locus_tag="VKJ77_15550"
     CDS             <1..1140
                     /gene="cbiE"
                     /locus_tag="VKJ77_15550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6y C5,15-methyltransferase
                     (decarboxylating) subunit CbiE"
                     /protein_id="HMC46733.1"
                     /translation="QALLAADTIFGGARHLAFLPARIGGERRAWPTPFTIAPVLEHRH
                     GCGRVCVLASGDPMMFGVGTTLARELAADEFCVVPARSSVSLAAARLHWALQDVAVVS
                     LVGRPVAALETQLHPGARLFVLSSDATSPGAVAALLTKRGFGASRLSVFEHLGGEQER
                     RIDRVASAWTASDVAALNLVAIECFAENHALRLPLTPGLPDGAYQHDGQLTKRDVRAI
                     TLSRLAPEPGELLWDVGAGCGSIGIEWMRTHPSCRAIAIEANDERQRFIEHNRDALGV
                     PGLHLVEGEAPGALAGLPEPDAIFIGGGVTAPDMLETCWSHLKKGGRMIVNAVTIQSE
                     ATLVAWRALHGGEMTRISVAHAQPLGDFDTWRQALPITLLHAVKP"
     gene            1159..>1787
                     /gene="cbiD"
                     /locus_tag="VKJ77_15555"
     CDS             1159..>1787
                     /gene="cbiD"
                     /locus_tag="VKJ77_15555"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase
                     CbiD"
                     /protein_id="HMC46734.1"
                     /translation="MRDETPEQPAPLRTGLSTGSCATATSLAAARLLLAGRVSEHADI
                     TLPKGQQVVMPLVFCRLAGDNCAEAGTVKDAGDDPDVTHGAIVFARVRLLGEPGVHFL
                     AGPGVGTITRAGLALPIGEPAINPVPRKMMTDHLSALAKEHGYSGGFEVSIGVENGAE
                     LALKTMNPRLGIVGGLSILGTTGIVRPFSCSAYIASIHQGIDVARANGYV"
BASE COUNT          308 a          534 c          589 g          356 t
ORIGIN      
        1 caggcgctgc ttgctgccga tacgattttc ggcggcgcgc gtcatctcgc gttcttaccg
       61 gcccggattg gcggcgaacg tcgcgcatgg cccacgccgt tcacgattgc accggtactc
      121 gaacatcgtc atggatgtgg gcgggtgtgt gtgctcgcga gcggcgaccc gatgatgttc
      181 ggcgtcggca cgacgctcgc ccgcgaactg gctgcggatg aattctgcgt ggtgcccgca
      241 cggtcttcgg tgtcgctggc cgcggcgcgt ttgcactggg cattgcagga cgtcgcggta
      301 gtgtcgttgg tcgggcgccc ggtcgcggcg ctcgaaacac agcttcatcc cggcgcacgc
      361 ttgtttgttc taagcagcga cgctacgagc ccaggcgcgg tcgccgcatt gttgacgaaa
      421 cgtggttttg gggcgagccg cctgagcgtg ttcgagcatc tcggcggcga gcaggagcgg
      481 cgtatcgatc gcgtggccag cgcgtggacg gcaagtgacg tggccgcgct gaacctggtg
      541 gcgatcgaat gtttcgcgga aaaccatgca ctgcgcttgc cgctgacgcc cggtcttccc
      601 gacggcgcgt accagcacga cggccagctc accaaacgcg atgtccgcgc gatcacgctg
      661 tcgcggcttg cgcccgagcc gggagaatta ctgtgggacg tgggtgcggg atgcggttcg
      721 attggtatcg aatggatgcg gacgcacccg agttgccgtg ccatagcgat cgaagcgaat
      781 gacgagcgtc aacgctttat cgaacacaat cgcgacgcgc tcggggtgcc cggactgcat
      841 ctggtcgagg gcgaggcgcc gggcgcgttg gccggacttc ctgagcccga tgcgattttt
      901 atcggcggtg gcgtgaccgc gccggacatg cttgaaacgt gctggtctca tctgaagaaa
      961 ggtgggcgga tgatcgtcaa cgccgtcacg atccagagcg aggcaacact cgtcgcgtgg
     1021 cgtgcgcttc atggcggcga gatgacgcgt atcagcgttg cccacgcaca gcctttaggc
     1081 gacttcgata cctggcgtca agcgctcccc attacgctgc tgcacgctgt taaaccataa
     1141 tgttcatcct ataccgccat gcgtgacgaa acgcccgaac agcccgcacc gctgcgcact
     1201 ggactgagca cgggcagttg cgcgaccgcg acgtcgcttg cggcggcgcg attgctgctc
     1261 gcgggtcggg tcagcgagca cgcggacatc acgttgccca aggggcaaca agtcgtgatg
     1321 ccgctcgtgt tctgccgtct tgctggagac aattgcgcgg aagcaggtac cgtgaaagat
     1381 gcaggcgatg accccgacgt cacccatggc gcgatcgttt ttgcacgcgt acgtttgctc
     1441 ggagaacccg gggtgcattt tctcgcagga ccgggcgtgg gcaccattac gcgggccgga
     1501 ctggcgcttc ccataggcga gcccgctatc aatcctgtcc cacgcaagat gatgaccgat
     1561 cacctttcgg cactcgcaaa agaacacggt tacagcggtg gcttcgaagt cagcatcggc
     1621 gttgaaaatg gcgctgaact cgcactcaag acgatgaatc cgcgcttggg gattgtcggc
     1681 gggttatcta ttctcggcac tacgggcatt gtccggccgt tttcctgctc ggcttatatc
     1741 gcttcaattc atcaaggtat cgatgttgcc cgcgcgaacg ggtacgt
//
LOCUS       DATGBK010001117         1838 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_291222, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001117 DATGBK010000000
VERSION     DATGBK010001117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291222"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..922)
                     /locus_tag="VKJ77_15560"
     CDS             complement(<1..922)
                     /locus_tag="VKJ77_15560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008646081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004061 - arylformamidase activity
                     [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HMC46735.1"
                     /translation="MQDQRRWKNRPDGSNWGDFGPDDQLGRPNLITSEQVLKGAREIR
                     AGLSFCLSLPLDFPGDSKLNVRRHPPLLRPTTKDGLPYVNFPFARMEEQATDVVSDDQ
                     VLMSLQYSTQWDSLAHVGALFDADGDGVAESVYYNGYKANTDVVGPMEYRRDDAFAPH
                     ACGNEHSHAQALGIENLAVKGMQGRGVLVDLVAHYGREHRTVGYDELMFAIDADKVQI
                     DRGDMLLLRTGFAELVLEMNRHPDEAVLNSQCCALDGRDQRLLQWLTDSGIAALVADN
                     YAVERYPAGPAEGQESHYPLMPLHHHCLFKL"
     gene            complement(980..1723)
                     /locus_tag="VKJ77_15565"
     CDS             complement(980..1723)
                     /locus_tag="VKJ77_15565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012468006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC46736.1"
                     /translation="MDVKTAVRVFDVINLFAEVRQPMIYSEIARRTEIPLSSCHALLQ
                     TMVAKGYLYAPGVKAGYYPTQRLLHVARDICSEDPLTLLFQPLLTALRDATGETAALA
                     TLAGNRVVYLDVMESRQKIRYSDEPGGFMYVHASAAGKALLGALPVDARRRMLDSCEP
                     LSASTDGSVIDRAALEVEVEQGVTLGWHRSTGENVEDVAGLAKGFSIHGEAFALVIGG
                     PKARLLKNQEHAVAALLDIFDRIPQTLIG"
BASE COUNT          373 a          587 c          506 g          372 t
ORIGIN      
        1 cgagcttgaa caaacaatga tgatgcagcg gcatcagtgg atagtggctt tcctgacctt
       61 ccgccggacc cgcgggataa cgctcgaccg cataattgtc cgccaccagc gcggcaatgc
      121 ccgagtcggt cagccactgc aacagccgct gatcgcggcc gtcgagtgcg cagcactgac
      181 tgttgagcac ggcttcatcg ggatgacgat tcatctccag cacgagttca gcgaacccgg
      241 tgcgtagcaa cagcatgtcg ccgcgatcga tctgtacctt gtctgcgtca atggcgaaca
      301 tcagttcgtc gtaacccacg gtgcgatgct cgcgcccgta atgcgccacg agatcgacaa
      361 gaacgccgcg tccctgcatg cccttcaccg cgagattttc aatacccagc gcttgcgcgt
      421 ggctatgttc gttgccgcat gcgtgcggcg caaacgcgtc gtcgcgacgg tattccattg
      481 gcccgactac gtccgtattc gccttgtaac cgttgtagta gacgctttcc gccacgccgt
      541 caccgtcggc gtcgaagagc gcacccacat gcgcaagcga gtcccattgg gtggaatatt
      601 gcaggctcat caggacttga tcgtcgctca ccacgtcggt cgcctgctcc tccatgcgcg
      661 cgaacggaaa gttcacatag ggcaaaccat ctttggtcgt aggccgcaaa agcggcggat
      721 ggcgccgcac attcagcttg ctgtcgccgg gaaaatccag cggcagtgac aggcaaaaac
      781 tcaggccggc gcgaatctcg cgcgcgcctt tcagcacctg ttccgaggtg atcaggttcg
      841 gtcgtccgag ttgatcgtcg gggccgaaat cgccccagtt cgaaccgtct ggccggttct
      901 tccagcgcct ctgatcctgc atgttcttct ccttgcgcga cgtgttgagc cgtcggcgcg
      961 accagaatca ctacagccgc tagccaatca acgtctgcgg tatccggtcg aaaatatcga
     1021 ggagcgccgc gactgcgtgc tcctggttct tcagcagacg cgccttcggg ccgccgataa
     1081 cgagcgcgaa cgcttcgccg tggatggaga atcccttcgc aaggcctgca acgtcctcga
     1141 cgttttcccc tgtcgaacga tgccagccga gcgtcacgcc ctgctccact tccacctcca
     1201 gtgcagcgcg atcgatcacc gaaccgtccg tcgatgcgct caacggctcg caactgtcga
     1261 gcatgcgccg gcgcgcatcc accggcaacg cacctagcag cgccttgccc gcagcgctgg
     1321 cgtggacgta catgaacccg ccgggttcat cgctgtagcg aatcttctgg cgcgattcca
     1381 tgacgtccag atagacaacc cgattgcccg cgagcgtcgc gagcgcggcc gtttcgccgg
     1441 tcgcgtcgcg caaggctgtc agcaacggct gaaacagcag cgtcagcggg tcttcactgc
     1501 agatgtcgcg tgcgacatgc aacaagcgct gcgtcgggta ataacctgct tttacacccg
     1561 gcgcgtagag ataacccttc gccaccattg tctgcaaaag cgcatgacaa ctcgacaaag
     1621 ggatttcggt tcgacgcgca atctcgctgt agatcatcgg ttgccggact tcggcaaaca
     1681 ggttgatcac gtcaaagacg cgcactgcag ttttcacatc catgacaata ttatcgatat
     1741 atcgataact ttaacgcaat aggtttgggg gtatacgcct acaaatgcgc tcccatcacc
     1801 gtttttttgg tctgaacaac tccggacgaa gcctgaag
//
LOCUS       DATGBK010001118         1736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_151874, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001118 DATGBK010000000
VERSION     DATGBK010001118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151874"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..271
                     /gene="rplQ"
                     /locus_tag="VKJ77_15570"
     CDS             <1..271
                     /gene="rplQ"
                     /locus_tag="VKJ77_15570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HMC46737.1"
                     /translation="ELRKVVEPLITLGKKPSLANRRLAFNRLRDRDSVAKLFEVLGPR
                     FENRPGGYLSILKFGFRQGDNAPMALVMLMDRPELAEADDVQEAE"
     gene            458..784
                     /gene="cutA"
                     /locus_tag="VKJ77_15575"
     CDS             458..784
                     /gene="cutA"
                     /locus_tag="VKJ77_15575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006400637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HMC46738.1"
                     /translation="MPVVLVLTTLPDSEAAATLAQQAIDARLAACVTELGTVKSRYRW
                     NGKVEAAEELQLLFKTSLLRGDELTRFIEANHPYETPEIVSWQADASAAYGQWITAET
                     QRPLNV"
     gene            828..>1736
                     /locus_tag="VKJ77_15580"
     CDS             828..>1736
                     /locus_tag="VKJ77_15580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD
                     domain-containing protein"
                     /protein_id="HMC46739.1"
                     /translation="MLVSCFVLLFCSISPSYAADDFLDPAVAFKFSATEKPGEIDVRY
                     KVADGYYMYRERFAFAVKNGTATLGEPQLPAGKVHFDQTFNKDVETYRGELVIRIPVK
                     QASGPFDIAVTSQGCADQGICYPPMERVYHVSGAALQAASASGQTPSASTSDVPWYER
                     ATNADYAQSLLESGGFFAIVGLYFVAGVVLSLLPCSYPMIPILSAIIIGEGARVTRSR
                     GFGLSAAYVLGMALVYTALGVLAAMIGQSLGAWLQNPWVLGAFGVLLAIFALTLIAGV
                     DIALPARWQNSVNQASQKRSGGKVVAV"
BASE COUNT          328 a          475 c          534 g          399 t
ORIGIN      
        1 agaactccgt aaagtcgttg agccgctgat cacgctcggc aagaagccgt cgctggcaaa
       61 tcgtcgtctg gcgttcaacc gcctgcgcga tcgtgactcc gtcgcgaagc tgtttgaagt
      121 gctcggcccg cgctttgaaa atcgtccggg tggatatctg agcatcctga agttcggctt
      181 ccgccaaggc gacaatgcgc cgatggcact ggtcatgctg atggatcgtc cggaactcgc
      241 tgaagctgac gacgtgcaag aagctgaata agctagcacg ctgttgatcg aagaaaggcc
      301 aagcttttgc ttggcctttt tgtattgcgc acggggttcg cgtggcaggt tgcgacggcc
      361 agcgtttcag gtcataggcc gattggctga atgcgggttg tctacgtgca gtgctaggat
      421 tgcgtgcata tccactgtat tggagctttc tgtgaacatg ccggttgtcc tcgttcttac
      481 gacgttgccc gacagcgagg cggcggcaac gctcgcgcag caagccatag atgcacggct
      541 cgccgcctgc gtgacggagc tgggcacggt caagtcacgg tatcggtgga acggtaaggt
      601 agaggctgcc gaggagcttc agctcctgtt caaaacgagt ctcttacgtg gcgacgaact
      661 gacgcgcttt atcgaagcaa atcatcctta tgaaacacct gaaattgtct cgtggcaggc
      721 tgatgcgtcg gctgcatatg ggcaatggat caccgcggaa actcaacgtc ctcttaatgt
      781 ttaagccctt tgccttctcc gcacgccggc cgctcgacgc agtgctcatg ctggtgtcgt
      841 gcttcgtgct gctgttctgc tcgatctcgc cgagctatgc cgccgatgac tttctcgacc
      901 ccgcggtcgc gttcaaattc agcgctacgg agaaaccggg tgagatcgac gtgcgatata
      961 aggtcgcaga cggctattac atgtaccgcg agcgttttgc gtttgcggtg aagaatggca
     1021 cggcgacgct tggcgaaccg caattgcccg caggcaaagt gcacttcgat cagacgttta
     1081 acaaggacgt ggaaacgtat cgcggcgaac tcgtgatccg aattccggtg aagcaggcct
     1141 ccggcccctt tgatatcgcc gtcacgtcac agggttgtgc cgatcaaggc atttgttatc
     1201 caccaatgga gcgcgtttac cacgtaagcg gcgcagcgct gcaagccgcc agtgccagtg
     1261 gtcaaacgcc atcggccagc accagtgacg tgccttggta cgagcgcgcc accaacgccg
     1321 attacgcgca atcgttgctc gaaagcgggg gctttttcgc gattgtcggc ttgtacttcg
     1381 tggcgggcgt cgtgttgagt ttgttgcctt gctcttaccc gatgattccc attctttcgg
     1441 cgatcatcat tggtgaaggc gcgcgtgtaa cgcggtcgcg agggttcgga ttatcggcgg
     1501 cgtatgtgct tggcatggcg ctcgtctaca cggcgctagg cgtgctggcc gcgatgatcg
     1561 gacagagtct tggcgcgtgg ctccagaacc cctgggtgct cggcgcattc ggcgtgctgc
     1621 tggctatatt tgcgctcacg ctgattgccg gcgtcgatat cgcattgccc gcgcgctggc
     1681 aaaacagcgt taaccaggcg tcgcaaaagc gatcgggcgg gaaggttgta gctgtt
//
LOCUS       DATGBK010001119         6999 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_82875, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001119 DATGBK010000000
VERSION     DATGBK010001119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6999
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82875"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1553)
                     /gene="ureC"
                     /locus_tag="VKJ77_15585"
     CDS             complement(<1..1553)
                     /gene="ureC"
                     /locus_tag="VKJ77_15585"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006758739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HMC46740.1"
                     /translation="MTLRIGRRAYAEMFGPTTGDRVRLADTDLLIEVERDFTTYGEEV
                     KFGGGKVIRDGMGQSQRVHADVVDTVVTNALILDHWGIVKADIGIKNGRVFAIGKAGN
                     PDIQPGVTIAIGAATEVIAGEGMIVTAGGIDSHIHFISPQQIDEALASGVTTMLGGGT
                     GPATGTNATTCTPGPWHLERMLQAADGWPVNLGFLGKGNVSLPAPAIEQIKAGAIGLK
                     LHEDWGTTPAAIDNCLSVADDTDTQVAIHTDTLNEAGFVETTVAAFKGRTIHTYHTEG
                     AGGGHAPDIIKVCGESNVLPSSTNPTRPYTINTLDEHLDMLMVCHHLDPSIAEDIAFA
                     ESRIRRETIAAEDILHDLGALSMLSSDSQAMGRVGEVVMRTWQTAHKMKTQRGALPED
                     SSRNDNFRAKRYVAKYTINPAITHGIAHEVGSIEPGKWADLVFWEPAFFGVKPAMILK
                     GGMIAVAQMGDPNASIPTPQPVHYREMFATRGGALGKTSLTFVSQMALDDGIGERYGL
                     KKQVVAVKN"
     gene            complement(1576..1881)
                     /locus_tag="VKJ77_15590"
     CDS             complement(1576..1881)
                     /locus_tag="VKJ77_15590"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017332918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HMC46741.1"
                     /translation="MIPGEYLIDDGEHELNAGRETVSVTVSNTGDRPVQVGSHFHFFE
                     VNTALTFERDKARGFRLNIASGTAVRFEPGQERTVELVALAGDRRVYGFNGLVMGPL"
     gene            complement(1913..2215)
                     /locus_tag="VKJ77_15595"
     CDS             complement(1913..2215)
                     /locus_tag="VKJ77_15595"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HMC46742.1"
                     /translation="MKLTHREKDKLLIFTAALLAERRRARGLKLNYPEAIAFISAALM
                     EAARDGRTVADVMHYGTTLLTRDDVMDGVPEMIPDIQIEATFPDGTKLVTVHHPIP"
     gene            complement(2282..3001)
                     /locus_tag="VKJ77_15600"
     CDS             complement(2282..3001)
                     /locus_tag="VKJ77_15600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC46743.1"
                     /translation="MPLVETQNLKKQFGANQVLKGIDFSVESGQVVAIIGRSGSGKST
                     LLRTLNGLESIDEGSIEIDGEHMDARHADLRALRLKVGMVFQQYNLFPHLTAGQNVML
                     AQTVVKKVHKAKARATAEQVLERVGLADKFNAYPEQLSGGQQQRVAIARALAMKPTVL
                     LCDEITSALDPELVGEVLAVVESLAADGMTLIMVTHEMRFARRVSNKVVFMHQGRVWE
                     SGTPEEIFERPTTIELKKFIQ"
     gene            complement(2988..3638)
                     /locus_tag="VKJ77_15605"
     CDS             complement(2988..3638)
                     /locus_tag="VKJ77_15605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010097593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC46744.1"
                     /translation="MIEFTFEQILTNLLLAARWTIVLSIVSFVAGGIVGFVLLIMRVS
                     SSRVLRTIVKVYIEIFQGTPLLMQLFLVFFGLPLLGIEVQPWIAATVGLTLFTSAYLA
                     EIWRGCVEAIPKGQWEASSSLAMNYLEQLRHVILPQATRIAIGPTVGFGVQAVKDTAL
                     VSIIGFTELTKAGTMISNATFRPFVVYGLVAVIYFVICYPLTRYARTLERKWNAAR"
     gene            complement(3635..4312)
                     /locus_tag="VKJ77_15610"
     CDS             complement(3635..4312)
                     /locus_tag="VKJ77_15610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006484385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC46745.1"
                     /translation="MAYQLQFGDLGQYAGMFASGAAVTLGLTAVSTVLGLTVGILGAA
                     GKGSKYPAVRSFVGGYVEAIRNTPFIVQLFFVFFGLPALGIRIDEYVAAVLAMTLNLG
                     AYSVEIIRSGIAAVPKGHLEAAASLAMTRGETFRHVVLPQAIAKVFPALTSQIVITML
                     GSAVVSQISVADLTYAASYIQSRNFRAFETYFLITAAYLVMAIVLRFLLNEAGKRLFA
                     RNLRGAR"
     gene            complement(4364..5167)
                     /locus_tag="VKJ77_15615"
     CDS             complement(4364..5167)
                     /locus_tag="VKJ77_15615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46746.1"
                     /translation="MTNTLRRHALRTAVAALLAIPALALVPLTAHADALDNVTKAGVL
                     KVAVPEDYPPFGAVGGDMQPQGYDIDMAALLAKSLGVKLELVPVNSANRVPYLTTNKV
                     DLVISSLGKTPDREKVMDFSAAYAPYFQGVFGPADIKVTGPADLTGKTVGATRGALEE
                     IALTQMAPNATIKRFEDNNATIQAFLSGQVQLIAAGNIVAAAILSKNPPRRPEPKFVI
                     KNSPCFVGMNKNEPRLLAKVDAAIAQSKKDGSLEAMSEKWFKAPLPAGL"
     gene            complement(5372..6250)
                     /locus_tag="VKJ77_15620"
     CDS             complement(5372..6250)
                     /locus_tag="VKJ77_15620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HMC46747.1"
                     /translation="MHHEPIAALLPPTASDSDEWHGKLELGFTHQPGRTALTHRKHVG
                     PLRMQRPLYPEGETICHAVIVHPPGGVAGGDRLAIDIDLAEQTHAVITTPGATKWYKA
                     NGKLATQRIDIRVGANAKLDWLPQNNIVFESSNVALDFTLTVDATATAIGWDAMQLGR
                     QAAGERWSDGRLVSTARIKDSHGRLRWFERALLSADDPLRLAPQGLAGFPTYGTLWAI
                     GPACDDALAESLTASLPFNETLRAAASCVAPGVMIIRAASHSMEPLQQLMIECWTTLR
                     PLIHGTDARPLRLWTT"
     gene            complement(6294..6986)
                     /gene="urtE"
                     /locus_tag="VKJ77_15625"
     CDS             complement(6294..6986)
                     /gene="urtE"
                     /locus_tag="VKJ77_15625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017332923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter ATP-binding subunit UrtE"
                     /protein_id="HMC46748.1"
                     /translation="MLEVDSLNQFYGGSHILRDVKMTVPDGKLTVLLGRNGVGKTTLL
                     RCLIGVVPTKSGTISWRGAKISSMPTYKRVSSGLAYVPQGRDIFGRLTVEENLLVGAA
                     SRKSPSKVPDRIYELFPVLKEMKSRRGGDLSGGQQQQLAIGRALMSEPQLLILDEPTE
                     GIQPSIIQDIGRTLRQLVDEMGMTVLLVEQYYDFARELADRYWVMSRGEIVAGGAGAD
                     MEAEGVRELIAV"
BASE COUNT         1315 a         2098 c         2137 g         1449 t
ORIGIN      
        1 caatttttca ccgctaccac ttgcttcttc aatccatacc gttcgccgat accgtcatcc
       61 agcgccatct gcgagacgaa cgtcagagag gtctttccca acgcgccgcc gcgcgtcgcg
      121 aacatctcgc gataatgtac cggctgcggc gtcgggatcg atgcgttcgg gtcccccatc
      181 tgcgcgaccg cgatcatgcc gcctttcagg atcattgcag gcttcacacc gaaaaacgcc
      241 ggttcccaga agacgagatc ggcccattta cccggttcga tggaaccgac ttcatgcgcg
      301 atgccatgcg tgatggccgg gttgatcgtg tacttggcga cgtagcgttt cgcgcggaaa
      361 ttgtcgttac gcgatgagtc ttccggcaag gcgccgcgct gcgttttcat cttgtgtgct
      421 gtctgccacg tacgcatgac gacctcgccg acacgcccca tcgcctgcga atccgacgac
      481 agcatggaca gcgcccccaa gtcatgaagg atgtcttcgg cagcaatcgt ctcgcggcga
      541 atccgtgatt cggcaaacgc gatatcttcc gcaatcgatg gatcgaggtg atggcacacc
      601 atcagcatgt cgagatgttc gtcgagcgtg ttgatggtgt acggccgcgt aggattcgtc
      661 gatgaaggca gcacgttcga ttcgccgcag accttgatga tgtccggtgc gtggccgccg
      721 cctgcgcctt cggtgtgata cgtgtggatc gtgcggccct tgaacgcggc caccgtggtc
      781 tcgacaaaac ccgcttcgtt cagcgtgtcc gtgtgaatgg cgacttgcgt gtcggtatcg
      841 tcggcgacgg ataaacagtt atcgatagca gccggcgtcg tgccccagtc ttcatgcagc
      901 ttcagcccaa tcgcaccagc cttgatctgc tcgatcgccg gcgcgggcaa actcacattg
      961 cccttgccga gaaagccaag gttgacgggc cagccatcgg cggcttgcag catgcgttcg
     1021 agatgccatg gccccggcgt gcaggtcgtc gcgttcgtac ccgttgcggg gccggtgccg
     1081 ccgcctaaca tcgtcgtaac gcctgaagcc agcgcttcat cgatctgctg cgggctgatg
     1141 aagtgaatat gcgagtcgat accgcccgcc gtcacgatca tcccttcgcc ggcaatgact
     1201 tcggtggcgg cgccaatcgc aatggtcacg cccggctgga tatccggatt acccgccttg
     1261 ccgatcgcaa acacgcgccc gttcttgata ccgatatccg ctttcacgat gccccagtga
     1321 tcgaggatca gcgcgttcgt cacgacggta tccaccacgt cggcgtgcac gcgttgcgac
     1381 tgacccatgc cgtcgcgaat caccttgccg ccgccgaatt tcacttcttc gccgtaggtc
     1441 gtgaagtcgc gttcgacttc gatcagcagg tcggtatcgg cgagacgcac gcggtcgccg
     1501 gtagtcgggc cgaacatctc cgcgtaggcg cggcgtccga tgcgtagcgt catttcgata
     1561 atcctgaagt tgagatcaaa gcggacccat gacgaggccg ttgaagccgt agactcggcg
     1621 atcgccggcc agcgccacga gttcaaccgt gcgctcctgg ccaggctcga accgcacggc
     1681 cgtacccgac gcaatgttca ggcgaaagcc tcttgccttg tcgcgttcga acgtgagcgc
     1741 cgtgttgact tcgaagaaat gaaaatgcga accgacctgc accggccggt cacctgtatt
     1801 cgataccgtc acggacaccg tctcgcggcc cgcgttgagt tcgtgctcac catcgtcgat
     1861 gagatattcg ccgggaatca tgcgcggctc cttttataag agtgctgcaa gttcagggaa
     1921 tcggatgatg cacggtcacg agcttggtgc cgtccgggaa ggtcgcttct atctggatgt
     1981 ccggaatcat ttccggtact ccgtccatca cgtcgtcgcg tgtaaggagt gttgtgccgt
     2041 agtgcatcac gtcggcgacg gtacggccgt cgcgcgccgc ttccatcagc gccgccgaga
     2101 tgaacgcgat ggcctccgga tagttcagct tcagcccgcg cgcgcgacgc cgttcggcga
     2161 gcagcgcggc ggtgaagatc agcagcttgt ctttttcgcg gtgagtgagc ttcatgggat
     2221 tgggacgtgt ctcaggtaag cgtcattgtt gcaagaatcc tagcattgca accctacgat
     2281 ttcattggat gaacttcttc aactcgatgg tcgtcgggcg ctcgaaaatc tcttccggcg
     2341 tgccgctttc ccacacacgg ccctgatgca tgaatacgac cttgttcgac acgcgccgcg
     2401 caaagcgcat ctcgtgcgtc accatgatga gcgtcatgcc atcggcggcg aggctttcca
     2461 ctacggccag tacttcgccc accagttcgg gatcgagcgc ggacgtgatt tcatcgcaga
     2521 gcaggaccgt cggtttcatc gcgagcgcgc gcgcgatagc cacgcgctgc tgctgtccac
     2581 ccgacagttg ttcgggatag gcgttgaatt tatctgcgag gccgacgcgt tcaagcactt
     2641 gctcggcggt cgcgcgcgcc tttgccttgt gaaccttctt caccacggtc tgcgcgagca
     2701 tcacgttctg tccggcggtg agatgcggga acaggttgta ctgctggaat accatgccga
     2761 ctttcaagcg cagcgcgcgc agatcggcat gacgagcgtc catgtgttcg ccgtcgattt
     2821 cgatcgaccc ttcgtcgata ctttccagtc cgttcaacgt ccgaagcaag gtgcttttac
     2881 ccgagccgct gcgtccgatg attgccacca cctgtcccga ttccaccgaa aaatcgatgc
     2941 ccttcaggac ctggttcgcg ccgaactgct tcttgaggtt ttgcgtttca acgagcggca
     3001 ttccatttcc tttcgagcgt gcgcgcgtag cgggtaagcg gataacaaat cacgaaatag
     3061 atcacggcga cgagaccgta gaccacgaac ggcctgaagg tcgcgttcga gatcatcgtg
     3121 ccggctttcg tgagttcggt gaagccgatg atcgagacca gcgccgtgtc cttcacggct
     3181 tgcacgccga agccgaccgt cgggcctata gcgatgcgcg tggcttgcgg aagaatcacg
     3241 tgacgcagtt gctcgaggta attcatcgcg aggctggacg aggcttccca ctgacccttg
     3301 ggaatcgctt caacgcagcc gcgccagatc tcggcgagat aggcgctggt gaacagcgtg
     3361 aggccgacgg ttgcagcaat ccacggctgg acttctattc cgagcagcgg caaaccgaag
     3421 aacacgagga acagttgcat caggagcggc gtgccctgga agatctcgat gtagaccttg
     3481 acgatcgtgc gcaacacacg cgaactcgac acccgcatga tgagcagcac gaagcccacg
     3541 atgccgccgg ccacgaacga aacaatcgac agcacgatgg tccagcgcgc cgcgagcagc
     3601 aggttggtga ggatctgttc gaaggtgaat tcgatcatcg ggcgcctcgc agattgcggg
     3661 cgaacaggcg tttgcctgct tcgttgagca ggaagcgcaa gacgatcgcc atcacgagat
     3721 aagcggccgt gatcaggaaa tacgtttcga acgcgcggaa gttgcgcgac tggatgtagc
     3781 tcgcggcgta ggtgaggtcg gccacggata tctgagaaac caccgcggag ccgagcatgg
     3841 taattacgat ctggctcgtc agcgccggga acacctttgc gatggcttgc ggcaagacca
     3901 cgtgcctgaa ggtctcgcca cgtgtcatgg caagcgatgc cgctgcttca agatgcccct
     3961 tcggcacggc cgcgataccc gagcggatga tctccaccga atacgccccg agattgagtg
     4021 tcatggcgag tacggcggcg acgtattcat cgatacgaat acccagcgcc ggaagcccga
     4081 agaagacgaa gaacaattgc acgatgaacg gcgtattgcg gatcgcttcc acgtagccgc
     4141 caacgaacga gcgcaccgcc ggatacttgc tgcctttgcc cgctgctccg agtatgccga
     4201 ccgtgaggcc gagcacggtg gacacggcag ttagcccaag tgttactgcc gcgccgctcg
     4261 caaacatgcc ggcgtattgc ccgagatcgc cgaactggag ttgataagcc attaaatcgg
     4321 cgccttgtta tttaagcttg atggtgttga ttcacaggct gaattaaaga ccggccggca
     4381 gcggcgcctt gaaccatttc tccgacatgg cttcgagcga gccgtccttc ttcgactggg
     4441 caatggccgc atcgacttta gccagcaggc gcggttcatt cttgttcatg ccgacgaaac
     4501 acggcgagtt cttgatcacg aacttcggct ccggacggcg cgggggattc ttcgacagga
     4561 tcgctgccgc gacgatattg cccgccgcga tcagttgaac ctggccggag agaaacgcct
     4621 ggatggtcgc gttgttgtcc tcgaaacgct tgatggtcgc gttcggcgcc atttgcgtga
     4681 gcgcgatttc ttcaagcgcg ccgcgcgtcg cgcctaccgt cttgccggtc aggtcggcgg
     4741 gaccggtgac cttgatatcg gcggggccga acacgccctg gaagtacggg gcgtaagccg
     4801 cggagaagtc catgaccttc tcgcgatccg gcgtcttgcc cagcgaagag atcaccagat
     4861 ccactttgtt tgtcgtcagg tacggcacgc gattcgcgct gttgaccggc acgagctcca
     4921 gcttcacgcc cagcgacttg gcgagcagcg cggccatgtc aatgtcataa ccctgcggct
     4981 gcatatcgcc gccgaccgcg ccgaacggcg ggtaatcctc cggcacggca actttcagga
     5041 cgccggcttt cgtgacgtta tcgagcgcgt cggcgtgggc agtcagcggg actagagcaa
     5101 gagccgggat ggcgagaagg gcggcgactg cggtgcgaag agcgtggcgg cgaagcgtgt
     5161 tggtcatttg attctctttc cttggatcgc gatgtggcgc ggtgcgtctc attcgtggat
     5221 gcactcgtcg gaaagggaat aaagcgagag tcgtgccatt gcctttgtgc ctttctgggc
     5281 gggcgtgagc gagatacacg tcttggcggt gcacaaagta tgggcgtaat tgtgcgcttt
     5341 tgtggtgcgc attttctgag gacttacccg gctacgttgt ccaaagacgc aatggtctgg
     5401 catcagtgcc gtgaatcagc gggcgcaacg tagtccagca ttcgatcatt aattgttgga
     5461 gtggctccat cgaatggctg gcggcacgga tgatcattac gcccggtgcg acgcaggacg
     5521 cggcggcgcg gagggtttca ttgaacggaa ggcttgctgt cagggattct gccagcgcgt
     5581 cgtcgcaggc cgggccgatc gcccagagcg tgccgtacgt gggaaagcct gcaagaccct
     5641 gcggcgcgag gcgtaaaggg tcgtcagcgg agagcaacgc gcgttcgaac caacgcaaac
     5701 ggccgtggct gtctttgatc cgcgccgtgg aaaccaaccg tccgtccgac catcgttcgc
     5761 ccgcggcctg acggcccagt tgcatcgcgt cccagccgat agccgttgcc gtcgcgtcta
     5821 ccgtcaacgt gaaatccagc gcgacgttcg atgactcgaa aacgatgttg ttctgcggca
     5881 gccagtcgag cttggcgtta gcgcctacgc ggatatcgat gcgctgcgtc gcgagtttgc
     5941 cgttcgcctt gtaccacttg gtcgcgccag gggtggtgat gacggcgtgc gtttgctcgg
     6001 ctaagtcgat gtcaattgcc agccggtcac cgcccgcgac gcccccgggc ggatgcacga
     6061 ttacggcgtg gcagatggtt tcgccttcgg gatacaaggg ccgttgcatg cgcaaaggcc
     6121 cgacgtgttt ccgatgcgtc agcgccgtgc gccccggctg atgcgtgaag ccgagttcga
     6181 gcttgccgtg ccactcgtcg gaatcggagg cagtaggtgg cagcagggcg gctataggtt
     6241 cgtgatgcat gaggctttaa ggatcggagc gagtcgccat gttacggcga acgtcagacc
     6301 gcgatcaact cccgcacgcc ttctgcctcc atatccgcgc ctgcgccacc ggctacgatc
     6361 tcgcctcggc tcatcaccca gtagcggtcg gctagctcgc gcgcgaagtc gtagtactgt
     6421 tcgaccagca gcaccgtcat gcccatttca tcgacgagtt gacgcaacgt gcgcccgata
     6481 tcctgaatga tcgagggttg aatgccttcg gtgggttcat cgaggatcag cagttgcggt
     6541 tcgctcatca acgcccggcc gatcgcgagc tgctgttgct ggccgcccga cagatcgccg
     6601 ccgcgccggc ttttcatttc cttcaacacc gggaacagtt cgtagatccg gtccgggact
     6661 ttcgatgggg acttgcggct cgccgcgccc accagcaggt tttcttctac ggtgagccgc
     6721 ccgaagatgt cgcgtccttg cggtacgtac gcgaggccgc tcgagacgcg cttgtaggtg
     6781 ggcatcgacg agatcttcgc gccgcgccag gagatcgtgc cgcttttggt gggcactacg
     6841 ccaatcaggc agcgcagcag ggttgttttg cccacgccgt tgcgacccag cagcaccgtg
     6901 agctttccat caggcacggt catcttcaca tcgcgcagga tgtggctgcc gccgtagaac
     6961 tggttgagtg aatcgacttc gagcatttta gaattcctt
//
LOCUS       DATGBK010001120         2331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_60037, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001120 DATGBK010000000
VERSION     DATGBK010001120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60037"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1269
                     /locus_tag="VKJ77_15630"
     CDS             <1..1269
                     /locus_tag="VKJ77_15630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004534304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HMC46749.1"
                     /translation="GDMGGLRPWLGNYGVTLSVQETSEYLRNLSGGVSREGAYDGLTQ
                     ATVQVDTSKAFGLPGGTFNVSGLQIHGRNLSQHTLLTLQSASGIEADASTRLWELWYQ
                     QSLLDGRVDVKLGQQSLDQEFMISQYATPFMNATFGWPVLPSVDLPSGGPAYPLSSLG
                     VRVRAKPADAVTVLAGVFDGNPAGSNTGDPQKQNSHGTNFNLGNGALFIAEMQYAINQ
                     PPADPKAPQPGGLPGTYKLGFWYNTQNFADLQHDTNGLSLANPASNGIPASHRGDYSV
                     YAVADQMIWRPSADSPQSVGVFARVMGAPGDRNLVDLGVNAGITLKAPFKGRDNDVAG
                     LAVGYAKIGANAQGLDRDTASFSTPGYPQRSAETIVEATYQYQVAPWWQLQADFQYAF
                     RPAGGIPDPANPSVRVHDEAVVGIRTVVNF"
     gene            1432..1998
                     /locus_tag="VKJ77_15635"
     CDS             1432..1998
                     /locus_tag="VKJ77_15635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HMC46750.1"
                     /translation="MHIANSSAAPLDASAGVPRYSPAQIALHWVIGLAIIVMLGIGLY
                     MVALPKGLAFKSSLISFHKSLGMTVFLLVLIRIVVRLVAGRPPLPPTPAWQRVAASMT
                     QGLLYVAMIVMPLTGYLGSSFNKFSTRFWGIPLPMWAWDDPGLRKIFFTAHTVSAWVL
                     IALIVLHVAGALKHQLMDRDRLMDRMLP"
BASE COUNT          468 a          726 c          699 g          438 t
ORIGIN      
        1 ggggatatgg gcgggctgcg tccatggctg ggtaactacg gcgtcaccct cagcgtgcag
       61 gagaccagcg aatatctgcg caacctgtct ggtggcgtgt cgcgtgaagg tgcctacgac
      121 gggctgaccc aagcgaccgt ccaggtcgat acatcgaagg ccttcggcct gccgggcggt
      181 acgttcaatg tctccggctt acaaattcat ggccgcaacc tgagccagca cacgctgctt
      241 acgctgcagt ccgcaagtgg catagaagcg gatgcaagca ctcgcctgtg ggagctttgg
      301 taccagcagt ccctgctcga cggacgggtc gatgtaaagc ttggccagca aagtctcgat
      361 caggaattca tgatcagcca gtacgccacg ccgttcatga acgcgacgtt cggctggccc
      421 gtcctgccct ctgtcgactt gccctcgggc ggccccgcgt acccgctgtc ctcactgggc
      481 gttcgtgtca gggcgaagcc agcggatgcg gtgaccgtgc tcgcaggcgt cttcgatggc
      541 aaccccgccg ggagcaatac cggggacccg caaaaacaaa acagtcacgg cacgaacttc
      601 aatctgggta acggcgcgtt gttcatcgcg gagatgcaat acgccatcaa tcagccaccg
      661 gccgatccca aagcccctca gccaggcgga ctcccgggca cttataaact cggcttctgg
      721 tacaacacgc agaacttcgc cgacctgcag cacgacacga acggcttgtc gctggccaac
      781 cccgcttcga atggaattcc cgccagtcat cgcggcgact acagcgtcta cgccgtcgcc
      841 gaccagatga tctggcgtcc gagcgccgac agcccgcaat cggtcggcgt gtttgcccgc
      901 gtgatgggtg cacccggtga ccgcaatctg gtggacctcg gcgtgaacgc gggtatcact
      961 ctgaaagcgc cgttcaaggg ccgggacaat gacgttgccg gacttgcggt tggctacgca
     1021 aaaatcgggg cgaacgcgca aggcctcgat cgggataccg catcgttttc aacacccggt
     1081 tatccgcagc gcagcgcgga aacgatcgtt gaagcgacct atcaatatca ggtcgcgcca
     1141 tggtggcaat tgcaggccga cttccaatat gcgttccggc cggcgggtgg aattcctgac
     1201 cccgcgaatc cgtccgtgcg cgtgcatgac gaagcggtgg tcgggatacg caccgtcgtt
     1261 aatttctagg aaacgcggtc ttccggcatc tgatctattc acgtgagcct gctgctcgtc
     1321 ggataaaacc aattggcgta atgtggagca acccgtggag cgactcatgg agcaacccgt
     1381 aaggaaaagg ccagacgcgg cccgcgccgc aatcaaccga aggaggcgac cgtgcacatt
     1441 gcgaattcgt ccgccgcgcc gctcgatgca agcgccggtg tgccgcgtta ttcacccgcg
     1501 cagatcgctc tgcactgggt aatcgggctg gcgatcatcg tcatgctcgg cattgggctc
     1561 tacatggtcg cgctgccgaa agggctcgct ttcaagtcga gcctgatcag cttccacaag
     1621 tcgcttggga tgactgtctt cctgcttgtg ctgattcgga tcgtggttcg cctggttgcc
     1681 ggccgacctc cgcttccccc aacgccggca tggcaacgcg tcgccgcgag catgacgcaa
     1741 ggtctgctat acgtggcgat gatcgtcatg ccgctgacgg gttacctcgg ctcgtcattc
     1801 aacaagttca gcacgcgttt ctggggcatc ccgctgccga tgtgggcctg ggacgacccc
     1861 ggcttgcgaa agattttctt cacggcgcac acggtcagtg cctgggtgtt gatcgcgctg
     1921 atcgtgctgc atgtggccgg cgcgctcaaa catcagttga tggaccgcga ccgcttgatg
     1981 gataggatgc tgccatgacg aggcccaacg gatgctcgag tgagggacac tgcaagcgtc
     2041 gcgtcacatg aaaatcaagc ggcgggttcg tccgcgggtc gtggtttgcg caatggaacc
     2101 gcaacgtccg taagcatgcc tgaacagtgg ccggcacaga gcgccggacg tccgctctac
     2161 cagggtgcat tgaacgcagc cgcggcaaga attgccacgc aaaagagata gagcgccttg
     2221 ccgcatgcca atcgcaatct gctacctcaa ctcatatacc cgagatgctc ggccaggatc
     2281 accgacccga taaccacaag aataaacccg cccgcaatct ccgcgcgctg c
//
LOCUS       DATGBK010001121         2093 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_198822, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001121 DATGBK010000000
VERSION     DATGBK010001121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2093
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198822"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..778)
                     /locus_tag="VKJ77_15640"
     CDS             complement(<1..778)
                     /locus_tag="VKJ77_15640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019936210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HMC46751.1"
                     /translation="MARSTSVFACSACGAQTPKWQGQCPHCEAWNSLERRNFAAGDAR
                     AGGTPAAAAHSFAGTMAAESKRLGTGQDELDRVLGGGLVLGSVVLIGGDPGIGKSTLL
                     LQVAAHVGRSRAVLYASGEESVAQVGLRARRLGLAAAELTLAHENDLDAVLALAAERK
                     VCLLVVDSIQTVQCGDAGSLAGAVTQLRECTARLLRFAKSTGTAIVIIGHVTKDGAIA
                     GPRVLEHLVDTVLYFESEAGSRYRLVRATKNRFGASHELGF"
     gene            1056..1880
                     /locus_tag="VKJ77_15645"
     CDS             1056..1880
                     /locus_tag="VKJ77_15645"
                     /inference="COORDINATES: protein motif:HMM:NF033484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HMC46752.1"
                     /translation="MSLKGKFRCVGLTDTGKVREHNEDTIAFDADIGLLVLADGMGGY
                     NAGEVASGIAVKTILNLVRESVDRQDLRAPDRESGMSRPSIILRDAIHRANKIIYQTA
                     RTQPNCEGMGTTVVSALFFDNKASIAHVGDSRLYRLRGEKFEQLTMDHSLLQELVDRG
                     FYSAEEAQRAANKNYVTRALGVEPGVEVEVQEVPVQKGDTFALCSDGLSDMVEDDDMH
                     LTLSTFGANLDTVAKQLIQLANDNGGRDNISVVMANVLDAFPARRGIFDKVLGWFG"
     gene            1895..>2093
                     /locus_tag="VKJ77_15650"
     CDS             1895..>2093
                     /locus_tag="VKJ77_15650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014007774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HMC46753.1"
                     /translation="MARLVLSLESQVMAEYNMTKERYTIGRLPDNDVRIDNPAVSGHH
                     SLIINILNDSFLEDLNSTNGTY"
BASE COUNT          418 a          634 c          659 g          382 t
ORIGIN      
        1 agaagcccag ctcgtgggat gcgccaaagc ggttcttggt cgcgcgcacc aagcggtagc
       61 gactgcccgc ttcgctttca aagtagagca cggtgtccac aagatgctcg agcacgcggg
      121 ggcctgcgat ggcaccgtcc ttggtcacat gtccgatgat gacgatcgcg gtgccggtgg
      181 atttggcaaa gcgcaggagg cgcgccgtgc actcgcgcag ttgcgtcacc gcgccggcga
      241 gcgagccggc atcgccgcac tgcacggtct ggatggaatc caccaccagg aggcagacct
      301 tgcgttcggc tgcgagtgcc agcactgcat ccaggtcgtt ttcgtgggcg agcgtgagct
      361 ccgcggcggc aaggccgagg cgtcgcgcgc gcaggcccac ctgcgccacc gactcttccc
      421 cgcttgcgta caaaaccgca cgcgagcggc ctacgtgcgc cgccacctgc aggaggagtg
      481 tcgacttgcc gatgcccgga tcgcctccaa tgagcacgac cgaacccagc acaagtcccc
      541 cgcccaacac ccgatcgagc tcatcctggc ctgttccgag gcgtttactc tcagcggcca
      601 tagtgcccgc aaaactgtgc gcggccgctg cgggtgtccc gccggcgcgt gcgtcgccgg
      661 cggcgaaatt gcgcctttcc agggaattcc aagcctcgca gtgcgggcac tggccctgcc
      721 atttcggcgt ctgggcgccg caggcgctgc acgcaaagac gctggtggat cgggccatgg
      781 ggctataagc agtaaggagc ggtgcgctcg tgagtcaact tggctaggat tcgccgcggg
      841 gttgtgctgg atgacgggtt tgtgactagg cgctcggact accttgatgg caatgctagc
      901 ttatgtcggc ccgaatcggg gcgggcaaac gggcaccacc acgtcgtcga atcgatgttg
      961 agaacagatt gcatgggtcg tgaaacccgt tgcacagcgc ccttcgcggg cggcagtgtg
     1021 acgcaggtca ccttttatcg cggccgaggc gcggcatgag tttgaagggc aagttccgct
     1081 gtgtgggttt gacggacacc ggcaaggtcc gcgagcacaa cgaggacacg atcgcctttg
     1141 atgccgatat cgggctcttg gtgctcgccg atggcatggg cggctacaac gcaggcgaag
     1201 tggcaagcgg catcgcggtc aagaccatct tgaacctggt gcgcgagtcg gtggatcgcc
     1261 aggacctgcg agcacctgat cgcgagtcgg gcatgtcacg tcccagcatc attctgcgcg
     1321 acgcgatcca tcgggccaac aaaatcatct atcagaccgc ccgcacacag cccaactgcg
     1381 aaggcatggg cacaacggta gtaagcgccc tgttcttcga caacaaggcc tccattgccc
     1441 acgtcggcga ctcgcgcctg taccgcttgc ggggcgagaa gttcgagcag ctgacgatgg
     1501 accattcgct cctgcaggag cttgtggacc gcggctttta ttccgccgaa gaggcgcagc
     1561 gcgcggcgaa caagaactat gtcacacggg cgctcggcgt tgagcccggc gttgaagttg
     1621 aagtgcaaga ggtaccggtg caaaagggcg atacgttcgc tttatgctcg gatggcctct
     1681 ccgacatggt ggaagatgac gacatgcact taacgctcag cacctttggt gctaatctag
     1741 atacggtcgc taaacaattg attcaactgg cgaatgataa tggcgggcgg gacaacatct
     1801 cggtcgtcat ggcaaacgtt ttggatgcgt tccccgcacg ccggggaatc ttcgacaaag
     1861 tcctaggctg gttcggctga cgcgaggctc acacatggca aggttggtct taagcctgga
     1921 aagtcaggtc atggcggaat acaacatgac caaggaacgc tacacgattg ggcgcttgcc
     1981 ggacaacgat gtccgcatcg acaacccagc cgtcagcggc caccactccc tcatcatcaa
     2041 tatcctcaac gattcgttcc ttgaggattt gaacagcacc aacggcacct acg
//
LOCUS       DATGBK010001122         1795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_37129, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001122 DATGBK010000000
VERSION     DATGBK010001122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37129"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..540
                     /locus_tag="VKJ77_15655"
     CDS             <1..540
                     /locus_tag="VKJ77_15655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HMC46754.1"
                     /translation="SNDQRRIAKVINFGLIYGMSAFGLASNIGISRDAAKLYIDRYFQ
                     RYPGVANYMEETRTKAKRDGFVETVFGRRLWLPEINGGSGPRRQGAERAAINAPMQGT
                     AADLIKLSMIAVQDWLEASKIESKMIMQVHDELVLEVPEAELPEVRKRLPELMCGVAK
                     LKVPLVAEVGVGNNWEEAH"
     gene            617..>1795
                     /locus_tag="VKJ77_15660"
     CDS             617..>1795
                     /locus_tag="VKJ77_15660"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012217403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HMC46755.1"
                     /translation="MHRFIIVGGGAGGLELATRLGDKFGNADGKRTARAQVTLIDRNS
                     THIWKPLLHEVAAGSMDPFSQELPYAAQARWHGFEFQQGDLLGIDRTARRVTLGPLLD
                     DEAGELMPQRDLEYDTLIVAIGSTTAFFGVQGAQENSLALDTVDQAELFRKRLIAACI
                     RAEYRAPEPVTASAADAGPRQPRIQVAIVGGGATGVELSAELRNTAQVLHAYGLHKLD
                     PKHDIGIVLIEAGPRILPALPERVSTATADLLDKLGVALMTSETVAEVSRGSIRTASG
                     KTIAADLTVWAAGIRAPGVLAKLDGLATNRLGQLIVRRTLQTETDDNIFALGDCAACP
                     WPGGEKEGRNVPPRAQAAHQQASFLLKSLERRLEDKPLPDYTYRDFGSLVSLGHFSAV
                     G"
BASE COUNT          343 a          512 c          612 g          328 t
ORIGIN      
        1 tcaaacgatc agcggcgcat cgcaaaagtg atcaacttcg gcttgatcta tggcatgagc
       61 gcgtttggac tggcatcgaa tatcggcatt tcgcgcgatg cggcgaagct ttatatcgac
      121 cggtatttcc agcgctatcc gggtgtcgcg aactacatgg aagaaacgcg cacgaaggcg
      181 aagcgcgatg gttttgtcga gaccgtgttc ggacggcgct tgtggctgcc cgagatcaac
      241 ggcggcagcg gaccgcgacg gcaaggcgcc gagcgcgccg cgatcaacgc gcccatgcaa
      301 ggcacggctg ccgacctgat caagctttcc atgatcgccg tgcaggactg gctggaagca
      361 tcgaagatcg aaagcaagat gatcatgcag gtccacgatg aactcgtgct cgaagtgccc
      421 gaagccgagt tgcccgaagt ccgcaagcgc ctgccggagt tgatgtgcgg cgttgccaaa
      481 ctgaaggtgc cgctggtggc ggaagtcggc gtgggtaaca actgggaaga ggcgcactga
      541 aggcgcactg aggacgcatt gagcgtgccg ggtggcccat ccagctagtt ttgaatgatg
      601 tcatagggga gtttgaatgc atcgtttcat catcgtcggc ggcggagcgg gcgggcttga
      661 actggccacg cgtcttggtg acaagtttgg caacgcagac ggcaaacgca cggcgcgtgc
      721 gcaagtcacg ttgatcgacc gcaattccac gcacatctgg aagccgttgc tgcacgaggt
      781 cgcggccggc agcatggacc cgttctcgca ggaattgccg tatgcggcgc aggcgcgttg
      841 gcatggtttc gagtttcagc agggcgattt gctcggcatc gaccggacgg ccagacgcgt
      901 cacgctcggc ccccttctcg acgatgaagc cggcgagttg atgccgcagc gcgatctgga
      961 atacgacacg ttgattgtgg cgatcggtag cacgacggcc tttttcggcg tccagggcgc
     1021 gcaggaaaat tcgctcgcgc tcgataccgt cgatcaggcc gagttgttcc gcaaacggct
     1081 gatcgctgcg tgtattcgcg cggagtatcg ggcgccggag ccggtgacgg cgagtgccgc
     1141 cgatgccggg ccaagacagc cgcggatcca ggtggcgatt gtcggtggcg gggcgacggg
     1201 cgtggagtta tcggcggaac tgcgcaacac ggcgcaagtg ctgcacgctt acgggctgca
     1261 caagctcgat ccgaaacacg atatcgggat cgtattgatc gaagccgggc cgcgcattct
     1321 ccccgcgttg ccggaacgtg tatccaccgc gaccgccgac ttgctggaca agcttggcgt
     1381 cgcgttgatg acgagcgaga cggtggccga agtgtcgcgc gggtccatcc gcacggcgag
     1441 cggcaagacc atcgctgctg atctgaccgt ctgggcggcc ggtattcgcg cgccgggcgt
     1501 gctcgcgaaa ctcgatggct tggctacgaa ccggctcggc cagttgatcg tgcgccgcac
     1561 gctgcagact gaaaccgatg acaacatttt tgctctcggc gattgcgccg cctgtccgtg
     1621 gcccggcggc gagaaagaag ggcgcaacgt gccgccgcgt gcgcaggcag cgcatcagca
     1681 ggcaagtttc ctgctgaaat cgctggagcg ccgactggag gacaagccgt tgcccgacta
     1741 tacgtatcgc gactttggat cgctggtgtc gctcgggcat ttcagcgcgg tcggg
//
LOCUS       DATGBK010001123         2202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_60071, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001123 DATGBK010000000
VERSION     DATGBK010001123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60071"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..317)
                     /locus_tag="VKJ77_15665"
     CDS             complement(<1..317)
                     /locus_tag="VKJ77_15665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HMC46756.1"
                     /translation="MNDTDIDDQPGYVQRPVRRHRLGETRDAADDVGQEWPVALVYNG
                     ISHAVMMCTPRDLEAFAVGFSLTEGIVERGSDIHDIEVFFHDTPDGDTLPYAEVHLQV
                     VQQA"
     gene            512..988
                     /locus_tag="VKJ77_15670"
     CDS             512..988
                     /locus_tag="VKJ77_15670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase associated protein"
                     /protein_id="HMC46757.1"
                     /translation="MALYDAPRLFGFELESTENLSFIPLVVRFNLDRFGQIISLDQWR
                     RLPHSDRELLARFPVEDDAAIEPNFDRALAEMLRTHADATPENFAPDVDPIWAHTDVV
                     PETVIRQSSLCGIGSPSLGRWSELSRFQRYALAKLSRKADVNHDFVPAMREFGLAD"
     gene            1366..>2202
                     /locus_tag="VKJ77_15675"
     CDS             1366..>2202
                     /locus_tag="VKJ77_15675"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HMC46758.1"
                     /translation="MTSFFSRRLLVNLAVVLIAMGANAFVAYQQIDRQSDADARTRRS
                     LSLMRDLDAYRSALGEILPEMSWYEASGVLTPLDVREARAAHINALEGGLRAQLDYEP
                     DMQGAFYLLGESARIAKRDAQSAFERAAIDKPGGARDWTQQAVRRLAEDQQSLDVELA
                     VLRAREADSLAATLNESALASRRAVILLILTMLAGGGALIYTFARHEKSTRDKLRIAR
                     AMQRSNERFRDLFDAHPVPMWIVDAATYRFVAVNPAALVHYGYNELEFLSMSVPDLHA
                     DDD"
BASE COUNT          405 a          709 c          656 g          432 t
ORIGIN      
        1 gcctgctgca ccacctgcag atgcacttcg gcgtatggca aggtgtcacc gtcgggggta
       61 tcgtggaaaa atacctcgat gtcatggatg tcactgccgc gctccacaat gccctcagtc
      121 agagaaaagc ccaccgcgaa cgcttccagg tcgcgcggcg tgcacatcat gaccgcgtgc
      181 gaaatgccgt tgtacacgag cgcgacgggc cattcctggc cgacgtcatc ggcggcgtcg
      241 cgtgtttcgc ctagccggtg gcgccgcacg gggcgctgta cgtagccggg ttgatcatcg
      301 atgtctgtgt cattcattgc gtggctcact tgctgattgc tttcgatgtc gcgttttagc
      361 cgcttcccgt cagtatttac gagataaatt cgggcataac ccttgctgct ttatggggca
      421 gcagacacac tacaagccgt tcaaggccct acgataacct accgcggcct cactcgcttc
      481 ccttgtccat cacgccaacg aggcacctgc catggcactt tatgacgctc cgcgcctgtt
      541 cggattcgaa ctggagtcga cggagaatct gagcttcatt ccgctcgtcg tgcgctttaa
      601 tctggaccgc ttcggccaga tcatttcact cgaccagtgg agaagactgc cgcacagcga
      661 ccgcgaactg cttgcgcgtt ttcctgttga agacgacgcc gctatcgaac ccaatttcga
      721 ccgggcgctt gctgagatgc ttcgaacgca cgccgacgcg acaccggaga actttgcacc
      781 cgacgtcgat ccaatctggg cgcacaccga cgtcgtgcct gaaaccgtga ttcgccagag
      841 cagtttgtgt ggaatcggct cgccgagtct tggtcgatgg tcggagctat cgcggttcca
      901 gcgctatgcg ctggccaagt tgtcgcgcaa ggccgatgtc aaccacgact ttgttccggc
      961 gatgcgggag ttcggtctag ccgattaagt ttttacgcgc gccccttgga cggggctgct
     1021 ggcggctgac aggcgctggc tggtgtctgc gtgtgcagcc cgggcgggat cgaaatcgcg
     1081 ctgggtgcag atcgccaggg cgcgagatca ggttctccgc cggacaccgc agtgtgtcag
     1141 gcgcacccac ccggatacgg cggctggcag caaactgaca ctggtcgcgg catgccgggt
     1201 gccacgcttg cccacatgac cgactacccc gcaaagggcg tcttttaagc gcctacccta
     1261 aactctcgcc aacgcctgcc gataaatagc catcgatgca cggaaatcga tgcggagacg
     1321 cgcgccccgt cttcccagcc ccgcccccgg acggcgatca agcccatgac ctcattcttt
     1381 tctcgccgtc tgctggtgaa cctggccgtc gttctgatcg ccatgggggc gaacgcgttc
     1441 gtcgcgtacc agcaaatcga ccgccaaagc gatgccgacg cgcgcacgcg gcgctcgctc
     1501 agcctgatgc gcgacctcga cgcataccgc agcgcgctcg gtgaaatcct cccggaaatg
     1561 agctggtacg aggcaagcgg cgtacttacc ccgcttgacg ttcgcgaggc gcgtgcggcg
     1621 catatcaacg cgctggaagg cggcctgcgt gcccagctcg attacgaacc cgacatgcaa
     1681 ggcgcgttct acctgctggg cgaaagcgcg cgcatcgcaa aacgcgacgc tcaatcggcg
     1741 ttcgaacgcg ccgccataga caagccgggt ggggctcgcg actggactca gcaagcggtc
     1801 cgtcgactcg ccgaagacca gcagtcgctc gatgtcgaac tggccgtgct gcgcgcgagg
     1861 gaagccgatt cactcgcggc tacgctcaat gaatctgcgc tggcgtcgcg ccgcgcggtg
     1921 atcctgctga tcctcacgat gctcgccggc ggcggcgcgc tgatctacac cttcgcgcgc
     1981 cacgagaaat cgacgcgcga caagttgcgc attgcccggg caatgcagcg cagcaatgag
     2041 cgtttccgcg atctgttcga tgcgcatccg gtacccatgt ggattgtcga tgccgcgacg
     2101 tatcgcttcg ttgctgtgaa tccggcagcg cttgtgcatt acggctacaa cgaactcgaa
     2161 ttcctgtcga tgagcgtgcc cgacctgcac gctgacgacg ac
//
LOCUS       DATGBK010001124         1557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_291378, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001124 DATGBK010000000
VERSION     DATGBK010001124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291378"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VKJ77_15680"
     CDS             complement(<1..358)
                     /locus_tag="VKJ77_15680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC46759.1"
                     /translation="MTDMQLPGLDFVADDALSGFRLQRLEVYNWGTFDARVWVLNPHG
                     ENALLTGDIGSGKSTLVDAVTTLLVPAHRIAYNKAAGADNKERSLRSYVLGHYKSERN
                     EVSGNAKPVALRDHNNY"
     gene            complement(351..1001)
                     /locus_tag="VKJ77_15685"
     CDS             complement(351..1001)
                     /locus_tag="VKJ77_15685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4194 domain-containing protein"
                     /protein_id="HMC46760.1"
                     /translation="MPDQALDAATTAAADLSSVVIPLLKGVCYSESDPVLWQALLELQ
                     ARVRDYVSVLGLALVLDESEGYAFLRARPEEDGTDDAPKLPRLVARRPLSFPVSLLLA
                     LLRKKLAESDAGGADTRLILTREQITELMRVFLPAGSNEAKVVDQIETHINKIVELGF
                     LRRLKPAAGKQEGPPAFEVQRILKAFVDAQWLADFDARLAAYRAQLVGPAEAAAHD"
     gene            complement(1004..>1557)
                     /locus_tag="VKJ77_15690"
     CDS             complement(1004..>1557)
                     /locus_tag="VKJ77_15690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3375 family protein"
                     /protein_id="HMC46761.1"
                     /translation="RTVAALSQQLRRFLDDQAWLENRRIMDILRDVEMHALAVRERPP
                     PGQIMSIADTAADIELPMERPLHVPSFKPRLADIALEAGDADVDAGALYSQVVIDRER
                     LAWHIRHVLQDRAQVTLRELCDMQPLEHGLAELVAYLQLGSDSFTTVVDEQAVDIVTW
                     QGKGPSGGQQTRQASFPRVIFVR"
BASE COUNT          299 a          474 c          464 g          320 t
ORIGIN      
        1 agtagttgtt gtgatctcgc aaggcgacag gtttggcgtt gccgcttacc tcattgcgtt
       61 ctgatttgta gtgaccgagc acgtacgaac gaagcgacct ttccttattg tccgcgcccg
      121 ctgccttgtt gtaggcaatg cgatgcgccg ggacgagcag cgtggtgacc gcgtcgacca
      181 gcgtcgattt acccgagccg atatcacccg tcagcagcgc gttttcgccg tgtggattca
      241 gcacccatac gcgagcgtcg aaggtgcccc agttgtagac ctccaggcgc tgaaggcgga
      301 aacccgacag cgcgtcgtcg gctacgaagt cgagccctgg tagttgcatg tcagtcatgg
      361 gcggctgcct ccgctggacc aacgagctga gcgcggtagg cggcgagcct cgcatcgaaa
      421 tcggcaagcc actgagcgtc cacgaacgct ttcaggatgc gctgcacctc gaacgcaggc
      481 ggaccttcct gtttacctgc cgcaggtttg agccgtcgca ggaatcccag ttcgacgatt
      541 ttgttgatat gtgtctcgat ctgatcgacc actttcgctt cgttgctgcc ggcgggcaga
      601 aatacccgca tcagttcagt gatctgttcg cgcgtgagga tgaggcgagt atccgcaccg
      661 ccagcgtcgg attcggcgag cttttttcta agcaacgcga gcagcaggct gaccggaaat
      721 gacagcggcc tccgtgcgac gagacgcggc agtttggggg cgtcgtctgt cccgtcttcc
      781 tccgggcgcg cgcgcaaaaa agcgtaccct tccgattcgt cgagcaccag cgcgaggccg
      841 agtaccgaaa catagtcacg cacgcgggcc tgcagctcga gcaacgcttg ccagagaacg
      901 ggatcgctct cgctgtagca gactcctttg agcagcggaa taaccacgct ggacagatcg
      961 gctgcagcgg ttgttgctgc gtctaaagct tgatccggca tccttacctc acaaaaatga
     1021 cacgcggaaa gctggcttgc cgcgtttgtt gcccgccgct tggccccttg ccctgccagg
     1081 tcacgatatc gacagcttgt tcatccacta ccgtcgtaaa ggagtcgctg ccgagttgca
     1141 ggtaggccac cagttccgcc aaaccgtgct caagcggttg catgtcgcat agctcacgca
     1201 acgtcacttg agcgcgatcc tgcaggacat gacggatgtg ccatgcaagc ctttcgcgat
     1261 cgatcacgac ctgcgaatag agcgcgccgg catccacgtc ggcgtcaccg gcttcgagcg
     1321 caatatcggc caggcgtggt ttgaaagacg ggacatgcag tggcctttcc ataggtaact
     1381 caatgtctgc agccgtgtcg gcgatgctca ttatctgacc gggcggcggc cgctcccgca
     1441 cagccagtgc atgcatctcc acgtcgcgca ggatgtccat gatgcggcga ttttccagcc
     1501 acgcctgatc gtcgaggaac cgtcgcaact gctgcgaaag cgcggcgacg gttcgct
//
LOCUS       DATGBK010001125         1505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_128938, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001125 DATGBK010000000
VERSION     DATGBK010001125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128938"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            255..803
                     /locus_tag="VKJ77_15695"
     CDS             255..803
                     /locus_tag="VKJ77_15695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46762.1"
                     /translation="MKIVCREHIDLSVSVERAFAFATDIARWPMWFASMVNAHLPECQ
                     DLELGAVLRVCMAEGRNRRQEMFEVTRYVRNAFLSLEGELSAARRFDFRFEQRGSASR
                     ISITEGYPVFGGMIPALYDAIFRRRRARRGLLESLTHLRGLLEDSLEPKYHADDFVTE
                     EAARTAVQNRPLHAVNRSPQVA"
     gene            814..1233
                     /locus_tag="VKJ77_15700"
     CDS             814..1233
                     /locus_tag="VKJ77_15700"
                     /inference="COORDINATES: protein motif:HMM:TIGR02605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FmdB family zinc ribbon protein"
                     /protein_id="HMC46763.1"
                     /translation="MPVYEYRCKSCGETHEISHGFNDDRPTKCPTCGGQLIRVFHPIG
                     VVFKGSGFHKTDYTKSGVRAQSSDSQGDKSGDAKPSEGKQGEGKAGEGKAGESKSGES
                     KPAQDKPSGGKSGESKPSESKSSESKSSSDPKSAKSS"
     gene            1230..>1505
                     /locus_tag="VKJ77_15705"
     CDS             1230..>1505
                     /locus_tag="VKJ77_15705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46764.1"
                     /translation="MIVVAYAGLIAGALACLIFAALCIGPALRLRAVTLKLANHPTLR
                     TVEAASDSLQAFAVAGSRLEDARHRFGTAAVTINAAAASVGAYASQVA"
BASE COUNT          321 a          448 c          445 g          291 t
ORIGIN      
        1 ccatgccgcc gccgggaaga agaaatgctg aacggttcgc tttcacatgc cgcgcgagaa
       61 gtatcttttc ttttttcaca gcaagcgctg cgacacggac ccgcaccatc gattcacact
      121 ccagcacttc gtcatgcggg accgcaagca ggtttttccg accgcgattc caataaaact
      181 acgagagcat cggcttcgcg ccatcgccgc cgccgccttt tcggcccggt gtatcactat
      241 gtagggggac gcggatgaag atcgtttgcc gggagcacat cgacctctca gtttccgtgg
      301 agcgcgcatt cgcgttcgcg accgacatcg cgcgctggcc catgtggttc gcaagcatgg
      361 tcaatgccca tcttccggaa tgccaagatc tcgagctcgg agcggttctt cgtgtctgca
      421 tggcagaggg acgcaaccgc cgtcaagaga tgtttgaagt cacgcgttac gtgcgtaacg
      481 catttctgtc gttggaaggc gagctttccg cggcccgccg gttcgatttt cgattcgaac
      541 agcgaggttc tgcatcgcgc atttcgatca ccgagggcta tcccgttttc ggcggtatga
      601 ttccagcgct gtacgacgct attttccgcc gccggcgcgc gcggcgcggt ctgctcgaat
      661 cgctgacgca tttgcgtggc ctcctcgaag atagcttgga gccaaaatac cacgccgacg
      721 atttcgtgac cgaagaagcg gcgcgaaccg ccgttcagaa ccgtccgctg catgcggtca
      781 accggtcgcc tcaggtagcg taaacatcag cgaatgccag tttacgaata tcgctgcaag
      841 tcgtgcggcg aaacgcacga aatctcgcac ggattcaacg acgatcgccc cacgaagtgc
      901 ccgacgtgcg gaggccagct catcagggtt ttccatccga taggcgtcgt gttcaagggc
      961 agcggattcc acaagaccga ctatacgaaa agcggcgttc gcgctcaatc gtccgattcg
     1021 caaggcgaca aatcaggcga tgcaaagccg agcgaaggca agcaaggaga aggtaaagcg
     1081 ggagaaggca aggccggaga aagcaaatcg ggcgaaagca agccggcgca agacaagccg
     1141 tccggcggca agtccggcga aagcaagcca tcggaatcca agtcatcaga gtccaaatct
     1201 tcctccgatc cgaagtcggc gaaatcatcg tgatcgttgt agcgtatgcc ggtctgatcg
     1261 ccggcgctct cgcgtgcctc atctttgctg cactgtgcat cggcccagcg ttgcgtctgc
     1321 gcgctgtgac gctgaagtta gcgaatcacc cgacgttgcg tacagtcgag gcggcaagcg
     1381 actcgcttca ggcgttcgcc gtcgccggga gccggctcga agatgcgaga catcgattcg
     1441 gaaccgccgc agtcacgata aacgctgcgg ccgcgtcggt tggcgcgtat gcaagtcagg
     1501 tcgcg
//
LOCUS       DATGBK010001126         2092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_175257, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001126 DATGBK010000000
VERSION     DATGBK010001126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175257"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..734
                     /locus_tag="VKJ77_15710"
     CDS             <1..734
                     /locus_tag="VKJ77_15710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46765.1"
                     /translation="GESYRQQRPVASLIAERLPATLILTLTAFVAALTFGVALGAWSS
                     AKAGTWMDSLVTTFSMIFYATPLFWLALMAVLLFSVKLDWLPGFGYETVGSGYTGMAR
                     FVDIVKHLVLPATVLAVFYMAVYARMTRTSMLEVAQMDFIKTARAKGLTPGRILRRHI
                     LRNALLPVITLAGIQAGAMVGGAVLIETVFAWPGIGRLMFDALVQRDYNLLLGTFLVT
                     AALAVAFNVVTDLLYTLVDPRIELI"
     gene            731..1576
                     /locus_tag="VKJ77_15715"
     CDS             731..1576
                     /locus_tag="VKJ77_15715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46766.1"
                     /translation="MNTTFWRKFRRNKGAVAGLVFLVLIVVLAVLAPMIAPYSPWDMV
                     QRPFLPPLGAPGFWFGTDTMGRDIGSDLAYGARVSLLIGLVSTLAGVVFGTGIGAFAG
                     FYGGWVDNALMRFTELFQAIPSFAMAIVLVAIFQPSVVSIVIAIAVVSWPPIARLVRG
                     EFLTLRNRDFVHAAKLGGESNLRIMFTQILPNAAAPIIVMGSLMVATAILLESSLSFM
                     GLGDPNVMSWGYMIGAGRTSLREAWWVSLFPGVAILLTVLALNLIGEGLSDGLNMRID
                     GRRRA"
     gene            1573..>2092
                     /locus_tag="VKJ77_15720"
     CDS             1573..>2092
                     /locus_tag="VKJ77_15720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006161738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC46767.1"
                     /translation="MSTPVLEVRGLAIKLPAGADRTLAVEGIDLRIEAGKTLCVVGES
                     GSGKSMIANAVMGLLPRPHVEPVAGSILFEGEDLLLRNEAGLRALRGSRIGMIFQDPM
                     SALNPVMRVGEQIAEVLDAHASLLPGLSSVQKRARVIAALRDVELPEPESIADAYPFR
                     LSGGQRQRVMIAA"
BASE COUNT          313 a          641 c          699 g          439 t
ORIGIN      
        1 tcggcgagtc gtaccggcag cagcgtccgg tcgcatcgct gatcgcggag aggttgcccg
       61 cgacactgat cctcacgctg accgccttcg tcgcggcgct cacctttggg gtcgcgctgg
      121 gggcatggtc gagtgcgaaa gcgggcacgt ggatggacag tctcgtcacc acgttttcga
      181 tgatcttcta cgcgacgccg ctcttctggc tcgcgttgat ggcggtgctg ctgttctcgg
      241 tcaagctcga ctggctgccc ggcttcggat acgaaacggt gggaagcggt tatacaggca
      301 tggctcgttt tgtcgatatc gtcaaacacc tggtgctccc agccaccgtg cttgctgtgt
      361 tctacatggc cgtctatgcc cgcatgacgc gcacatcgat gctcgaagtc gcgcagatgg
      421 acttcatcaa gacggcgcgc gcgaaaggcc tgacgccggg ccgcatcctg cgccggcaca
      481 tcctgcgtaa cgcgctgctg cccgtcatta cgctggccgg catccaggcg ggcgcgatgg
      541 tcggcggcgc agtgctgatc gaaacggtgt tcgcgtggcc gggcatcggc cgcctgatgt
      601 tcgatgccct cgtgcagcgc gattacaacc tcctgctcgg cactttcctt gtgactgcgg
      661 cgctggccgt ggctttcaac gtcgtcaccg acctgcttta cacgctggtc gatccgagga
      721 tcgaactgat atgaacacga ccttctggcg caaattccgt cgcaacaagg gcgcggtcgc
      781 gggcctcgtc ttcctggtgc tgattgtcgt gcttgccgta ctggcgccga tgatcgcacc
      841 gtacagcccc tgggacatgg tgcagcggcc gttcctgccg ccgctcggcg cgccgggctt
      901 ctggttcggc accgatacga tgggccgcga catcggctcc gatctcgcct acggtgcgcg
      961 cgtgtcgttg ctgatcgggc tggtatcgac gctagccggc gtcgtgttcg gcaccggcat
     1021 tggcgcgttc gccggtttct atggcggttg ggtcgacaac gcgttgatgc gtttcaccga
     1081 actgttccag gcgatcccaa gcttcgcgat ggcgatcgtg ctggtcgcga tcttccagcc
     1141 atcggtcgtg tcgatcgtga tcgcgatcgc cgtggtctcc tggccgccga tcgcgcgact
     1201 cgtgcgcggc gagttcctga cattgcgcaa ccgcgacttc gtgcacgcgg cgaagcttgg
     1261 cggtgaatcg aatctgcgca tcatgttcac gcaaatcctg ccgaacgctg ccgccccgat
     1321 catcgtgatg ggctcgctga tggtcgccac cgcgatcctg cttgaatcga gcctgagctt
     1381 catgggcctt ggcgatccga acgtcatgag ctggggctac atgattggtg cgggccgcac
     1441 gtcgctgcgt gaagcatggt gggtcagcct gtttcccggc gtcgcgatcc tgctgaccgt
     1501 gctcgcgctg aacctcattg gcgaagggct gagcgatggc ctgaacatgc gtatcgatgg
     1561 aaggagacgc gcatgagcac gcctgttctg gaggtccgcg gcctcgcgat caaactcccc
     1621 gccggcgcgg atcggacgct tgccgtggag gggatcgatt tgaggatcga ggcgggcaag
     1681 acgctgtgcg tggtcgggga gagcggttcc ggcaaatcca tgatcgccaa tgccgtgatg
     1741 ggattgctgc cgcgaccgca tgttgaaccg gttgcgggct ccatcctgtt cgagggcgaa
     1801 gacctgctgc tgcgcaacga agcgggcttg cgggcgctgc gcggcagccg gatcggcatg
     1861 atttttcagg acccgatgtc cgcgctcaat ccggtcatgc gcgtcggcga gcagattgcc
     1921 gaagtgcttg acgcgcatgc gtcgctgtta ccggggctgt cgtcggtgca aaagcgggcg
     1981 agagtgatcg cggcgcttcg ggacgtggag ctgcccgagc cggaatcgat cgccgatgcg
     2041 tatccgtttc gcctctccgg cggccagcgt caacgcgtga tgattgcggc ag
//
LOCUS       DATGBK010001127         2619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_151976, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001127 DATGBK010000000
VERSION     DATGBK010001127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2619
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151976"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..501)
                     /locus_tag="VKJ77_15725"
     CDS             complement(<1..501)
                     /locus_tag="VKJ77_15725"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HMC46768.1"
                     /translation="MLELFYSNRHETLSQALLDDVAAFALNGGDPFASQTIIVPSAAV
                     RRRLELDMAARFGICANVDLCYLAQWLWARIGDVLPVPEHSPFAPDRLVWRCFRLLGA
                     MTETAPESSSRLRAYLDAADDAMRYELARRIATVFDHYLTYRPEWLLHWQAGGSILAS
                     AGGAIDA"
     gene            757..>2619
                     /locus_tag="VKJ77_15730"
     CDS             757..>2619
                     /locus_tag="VKJ77_15730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family membrane protein"
                     /protein_id="HMC46769.1"
                     /translation="MRYSLEIRKFIYSQYFFGGLRIALGVSLPAILMLTVFHNRELGF
                     TIATGALGASVVDMPGPLKYKHNEMLACTVIGFLSALATGIASANAVTLWLTVVPLTF
                     VLSLVVVYGNRWPQISFATLFMMIVTLEEHFTPVQALVNASWILLGGLWYTYWATFVS
                     RLLVYRIERQALAESVFRCAEYLLARSAFYDLDANLDECYRKLIENQIAAVERQDAAR
                     DIVLRNLPKLRSGKLDARRVMLFNLFINVVDLHEMFVGAHTDYPLVRNTFGGQDILIF
                     YRDLMRKTALDLEDIGLAVLQNRPARARINVKAELRAIEYELDQMRRHDVPKKNPEAY
                     SAVSAAFRRLWSATRLIDKMRRQTRHDPSITETVIRVDPTLSRFVSSRRVPFMQIFSN
                     LTMASPSFRHALRVTIAVGVGFWLGRLLPLTNAYWIVMTTVIILKPGYSLTKQRNVQR
                     IIGTAIGCTACVGLILVVKDPHVLLVAMFACMVMSYSLLLFNYTASVVFTSAYVLLML
                     HLLAPGGMRLIGERAIDTAVGCAIAIAASHLFPYWEYRLMGKQVRDMIGAMRNYLEAS
                     WWWTGKPSAQAEAKSTADANLFADANAGTAQAATAALARVEAGETELATAGDASL"
BASE COUNT          511 a          793 c          807 g          508 t
ORIGIN      
        1 tgcatcgatt gccccgccgg ccgacgccag gatcgacccg ccggcctgcc agtgcagcag
       61 ccattccggc cgatacgtca gatagtgatc gaacacggtt gcgatacggc gcgcaagttc
      121 gtaacgcatg gcgtcgtcag cggcgtcgag gtaggcccgc agtcgcgacg agctctctgg
      181 cgcagtctcc gtcattgccc cgagcagccg gaagcagcgc cataccagcc ggtcgggcgc
      241 aaacggtgaa tgctcgggca cgggcaaaac gtccccgatc cgggcccaca accactgcgc
      301 cagataacac aggtccacgt ttgcacaaat gccaaagcgg gcggccatgt ccagttcgag
      361 ccgacggcgc accgccgcgc tcggcacgat gatcgtctgg ctcgcgaacg gatcgccgcc
      421 attcagcgcg aacgcggcga cgtcgtcgag cagcgcctgc gacagcgttt catggcgatt
      481 cgaatagaaa agttcgagca tggatcctgc tagttgggca tgaaaggcaa cggctcgaac
      541 ggccaaggcc acggacgtgt cgcgaggtga aacgacagga tagcaaaggg cgttcttatc
      601 cgcgattcgt ccgaacggcc taggtttgga tgccatcgag ttgggttaga ctcgaagcca
      661 cattgagtca ggtcccggtg cgcccaagtg gcatgccgag gccatggcgg gacctgagac
      721 accccgaaga tactcgggca gcaaattagg aagtcgatgc gttactcgct agaaatcaga
      781 aaattcattt atagccagta cttcttcggt ggcttgcgga tcgcgctcgg cgtctcgctg
      841 cccgccatcc tgatgctgac tgtatttcac aatcgtgaac tcggcttcac cattgcgacc
      901 ggtgcgctgg gcgcaagcgt cgtcgacatg ccggggccgt tgaagtacaa gcacaacgag
      961 atgctggcat gtacggtgat cggcttctta tcggcgctcg ctaccggcat cgcgagcgcg
     1021 aacgcggtga cgttgtggct gaccgttgtg ccgctcacct tcgtgctgtc gctggtggtg
     1081 gtctacggca accgctggcc gcagatcagc ttcgccacgc tcttcatgat gatcgtgacg
     1141 ctggaagagc atttcacgcc tgtgcaggcg ctcgtcaacg cttcatggat cttgcttggc
     1201 ggcctttggt acacctactg ggcgaccttt gtcagccgtt tgcttgtcta tcgcatcgag
     1261 cgccaggcgc tggctgagag cgtgttcaga tgcgccgaat atctgctcgc gcgctcagct
     1321 ttttacgatc tggacgccaa tctcgacgag tgttaccgaa agctgatcga aaaccagatc
     1381 gcggcggtcg agcgtcagga cgcggcgcgc gacatcgtgc tgcgcaacct gccgaaactg
     1441 agaagcggca agctcgatgc ccgccgcgtc atgcttttca acctcttcat caacgtggtc
     1501 gacctgcacg agatgttcgt gggggcacac accgattacc cgctcgtgcg caacaccttc
     1561 ggcgggcagg acatcttgat cttctatcgc gacctgatga gaaagaccgc gctcgatctc
     1621 gaggacatcg gcctggccgt gctgcaaaac cggccggcac gggcacgaat caacgtgaag
     1681 gccgagttgc gcgcgatcga atatgaactc gaccagatgc gccggcacga cgtcccgaag
     1741 aagaacccgg aagcctattc cgcggtgtcc gccgcgttca ggaggctttg gagtgcgaca
     1801 cggttgatcg acaaaatgcg tcgccagacg cggcatgatc cgagcattac ggaaacggtg
     1861 attcgcgtcg atccgacttt gtcgcgtttt gtctcgagcc ggcgcgtgcc gttcatgcag
     1921 attttctcga acctgacgat ggcctcgccg agcttccggc acgcgctgcg cgtaaccatt
     1981 gcagtgggcg tgggattctg gctcggacgc ctgctgccgc tcaccaacgc gtactggatc
     2041 gtgatgacaa cggtcatcat tctcaagccc ggttattcgc tcaccaaaca gcgtaatgtg
     2101 cagcggatca tcggcacggc gattggctgt acggcgtgcg tcgggttgat cctggtggtg
     2161 aaggatccac acgtgttgct ggtcgccatg ttcgcctgca tggtcatgag ctacagcctg
     2221 ctgctcttca actacacggc gagcgtggtg ttcacgtctg cctacgtgtt gctgatgctg
     2281 cacctgctcg cgccgggcgg catgcgcctg atcggcgaac gcgccattga caccgccgtc
     2341 ggatgcgcga tcgccattgc cgccagccat ctgtttccgt actgggaata ccggctgatg
     2401 ggcaagcagg tgcgcgacat gatcggcgca atgcgaaatt atctcgaggc aagctggtgg
     2461 tggaccggca agccctccgc tcaggctgaa gcgaagagca cggcggacgc caatcttttc
     2521 gccgacgcca acgccgggac agcgcaagca gcaacggctg cgcttgcgcg cgtggaagcc
     2581 ggcgaaacgg aactcgcaac agcgggggat gcttccctc
//
LOCUS       DATGBK010001128         5440 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_128945, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001128 DATGBK010000000
VERSION     DATGBK010001128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5440
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128945"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..879
                     /locus_tag="VKJ77_15735"
     CDS             160..879
                     /locus_tag="VKJ77_15735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HMC46770.1"
                     /translation="MGTAVNLWPLIGVAVIIVGFILRFNPMLIVAAAAIITGLAAHFP
                     IDRILTAIGTGFLKTRNIPLIILLPLAVIGLLERHGLRERAQIWISGIKAASVGRLLI
                     VYLLIRELTAAVGLTGLGGHPQMVRPLLAPMAEGAAEARFGKLSNETRFKLRAWSAAT
                     DNVGLFFGEDIFVAFGAIVLMTTFLKEAGIVVEPLHVAVWGIPTAICAFLIHGFRLWL
                     LDRRLNRELGALTKNVRGETA"
     gene            876..1832
                     /locus_tag="VKJ77_15740"
     CDS             876..1832
                     /locus_tag="VKJ77_15740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HMC46771.1"
                     /translation="MTLTLNYLFYLLGIVLVVVAGMIYVDKKHPRRLTTGTFWLVYAS
                     IFLIGDWLPVNVVGVLVVAMALIAGFGGVTAGKPKMLSDEARRNSALRLGNKLFVPAL
                     TIPVVTVVLTLGASYLVFGGKPLLDPKNVTLMGFGIGCIAALGVACVMTRDTVGQSMK
                     ETRRLVDALSWAAVLPQMLGMLGLVFSDAGVGKAVAHVTTAYVNLDYRLVAVAVYCVG
                     MALFTMVMGNGFAAFPVMTGGVGVPILVGVFHGNPATMVAIGMFSGYCGTLMTPMAAN
                     FNMVPAALLELPDKNAVIKVQVPTALSMLVVNIFLLNWLMFL"
     gene            complement(1848..2957)
                     /locus_tag="VKJ77_15745"
     CDS             complement(1848..2957)
                     /locus_tag="VKJ77_15745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HMC46772.1"
                     /translation="MPEPQTARQVARRFVVGFAVTVAATLAVFCLAPRLAFAVTGARS
                     PPGAGVPPTSVASLPGALPGLRVPPARPAPPDVDRSDGTTASGPVQAQPAHMPFYVAT
                     KGQVTIYVLGTLHVGFADDYPASQPFRKPILGALDASPILALEISPDDLLVSADEVSK
                     YGACRTPCLSRYLPDALWKKLETRMHGNPAMLDDISRSRPWLASMLVETVDTLKAGFQ
                     TEFGTETQLQNVYLRPRGRVIGLETLNEQISAFTRLTQAQQREMLAQDLVQTPAENVA
                     DVKELHRLWRIGDADALKAWDDAKTEKLARSRQLATQIDNRVVVDRNYRFAARVVAIA
                     APNKPVFMAIGALHLGGNRGVLALLRKRGFVVDPA"
     gene            complement(2950..3954)
                     /locus_tag="VKJ77_15750"
     CDS             complement(2950..3954)
                     /locus_tag="VKJ77_15750"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein"
                     /protein_id="HMC46773.1"
                     /translation="MNAVPETFTKDTVLVADKLTRHYTVKRSMFQQGTVKALNGVSFS
                     LERGKTLAVVGESGCGKSTLARQLTMIEAPTSGRLLIDGEDVANASRAKVADLRQRVQ
                     MVFQNPFASLNPRKTVEQTLGEPLAINTKLSSAERAERIAHMMRTVGLRPEHAARYPH
                     MFSGGQRQRVAIARAMILDPQILVADEPVSALDVSIQAQILNLFMDLQQQFGTSYVFI
                     SHNLSVVEHIADDVMVMYFGGVAELGDKATIYARPRHPYTRALMSATPALFEEDRRIK
                     IRLQGEMPSPLNPPSGCTFHQRCPYAIDKCRVEEPALRFVDGRHVSCHRAEEVGEIDA
                     "
     gene            complement(3951..4946)
                     /locus_tag="VKJ77_15755"
     CDS             complement(3951..4946)
                     /locus_tag="VKJ77_15755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46774.1"
                     /translation="MNDLLTIRNLAVSFNGLPAVDRIDMSVKPGEVVGVVGESGSGKS
                     VTMMALMGLIDAPGIVTADQVTFNGVDLLKASARQRRKIIGKDIAMVFQDALSSLNPS
                     YTVGYQIKEVLKLHEGLRGAKLQQRALELLDQVGIPDAKSRIDAFPHQMSGGMNQRVM
                     IAMAVACNPKLLIADEPTTALDVTIQAQIMELLVKLQKERGMALVLISHDLAVVSEVA
                     QRVAVMYAGEIIETNHVPTIFSEPHHPYTEALLAAIPEHSRGAERLAALPGMVPGRDD
                     RPTGCLFAPRCSYAVDDCRKARPALFQLAPNDPAVRARCIKPLNMELVADHGGAR"
     gene            complement(4948..>5440)
                     /locus_tag="VKJ77_15760"
     CDS             complement(4948..>5440)
                     /locus_tag="VKJ77_15760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006489141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC46775.1"
                     /translation="VLLALPSLLLAVAVVAIIGPGLINTMLAIAIVALPGYVRLTRAA
                     ALGELQREYVTASRVAGAGTVRLMFSQVLPNCAAPLIVQATLGFSSAILDAAALGFLG
                     LGVQPPAAEWGAMLASARDYIESAWWIVTMPGLSILISVLVINLLGDGLRDALDPKLK
                     RMA"
BASE COUNT         1017 a         1712 c         1661 g         1050 t
ORIGIN      
        1 tcaaggaacc tggatgcctc gcgtattggc ggggcgtttt cgtaagcggc cgcagagccg
       61 ttttatcaag ccaacggaac ggtccgctcg aagcaagcgg ttcgtccggc gatggaagca
      121 gcccttaccg gggctttacc ccgatcactt ggagatctta tgggaaccgc tgtcaaccta
      181 tggccactga taggtgtggc cgtcatcatc gtgggattta tcctgcgctt caatccgatg
      241 ctgatcgtgg ccgccgccgc catcatcacc ggccttgctg cgcacttccc gattgatcgc
      301 atcctcaccg cgatcggtac gggcttcctc aagacgcgca acatcccgct catcattttg
      361 ctgccgttgg ccgtgatcgg tttgctggaa cggcatggcc tgcgtgaacg cgcgcaaatc
      421 tggatttcgg gcatcaaggc agcgtcggtc gggcgcctgc tgatcgtcta tttgctgatt
      481 cgcgagttga cggcggccgt tgggctgacc ggtctcggcg gacatccgca aatggtccgg
      541 ccgctgctcg cgcctatggc cgaaggcgcg gctgaagcac gtttcggcaa gctctccaat
      601 gaaacccgct tcaagctgcg cgcctggtcc gccgcgaccg ataacgtcgg cctgttcttc
      661 ggcgaagaca tcttcgttgc gttcggcgcg atcgtattaa tgacgacctt cctgaaggaa
      721 gcggggatcg tggtcgaacc actgcacgtc gccgtctggg gcatcccgac cgcgatctgc
      781 gcattcctga ttcacggctt ccggctgtgg ctcctcgatc gacggctgaa tcgcgaactc
      841 ggcgcgttga ccaaaaacgt tcgcggagaa actgcatgac acttacgctc aactatctgt
      901 tctatctgct gggcatcgtg ctggtcgtgg tcgccggcat gatctatgtc gacaagaagc
      961 atccgcgccg tctcaccaca ggaacgttct ggcttgtgta tgcgtcgatt ttcctgatcg
     1021 gcgactggct gccggtcaat gtggtcggcg tgctcgttgt cgcaatggcc ttgattgcag
     1081 gcttcggcgg cgtcacggcc ggcaagccga aaatgctctc cgatgaagcg cgtcgcaaca
     1141 gcgccctgcg tcttggcaac aagctgttcg tgccggcgct gaccattcct gtggtgacgg
     1201 tggtccttac gctgggcgcg agttacctcg tgttcggcgg caagccgctg ctcgatccga
     1261 agaacgtcac gctgatgggt tttggcatcg gctgtatcgc cgcgctgggc gtggcctgcg
     1321 tgatgacgcg cgatactgtc gggcaatcga tgaaagaaac gcgccgtctg gtcgacgcgc
     1381 tttcatgggc cgcggtcctt ccgcaaatgt tgggcatgct gggcctggtg ttttccgatg
     1441 cgggcgtggg caaggcggtc gcgcacgtga cgacggcgta tgtgaacctc gattaccgtc
     1501 tggtcgcggt cgccgtgtat tgcgtcggca tggcgctctt cacgatggtc atgggcaacg
     1561 gattcgcggc gttcccggtg atgaccggcg gcgtaggcgt gccgatcctg gtcggcgtat
     1621 tccacggcaa tccggccacg atggtcgcga tcggcatgtt ctccggctac tgcggcacgc
     1681 tcatgacgcc gatggccgcg aacttcaaca tggtgccggc agcgctgctg gaattacccg
     1741 ataaaaacgc ggtgatcaaa gtgcaagtgc caaccgcgct gtcgatgctg gtggtgaata
     1801 tcttcttgct gaactggctg atgttcctgt gatgcaaagg cgtgggttca cgccggatcc
     1861 accacgaacc cacgctttct aagcaacgcc agcacgcccc ggttaccccc aagatgcaac
     1921 gcgccgatag ccatgaacac tggcttgttc ggcgcggcga tcgccaccac gcgcgccgcg
     1981 aatcgataat tccggtcgac caccacgcga ttatcgatct gcgtggcaag ctgcctcgat
     2041 cgcgccagtt tctccgtctt ggcgtcgtcc cacgccttca gcgcatcggc atcgccaatc
     2101 cgccatagcc gatgcagctc cttcacatcg gcaacgttct cggccggcgt ctggaccaga
     2161 tcctgcgcga gcatttcccg ctgctgcgcc tgcgtgagcc gcgtgaacgc ggagatctgc
     2221 tcgttgagtg tctccagccc gatcactcgc ccgcgcggcc gcaaatacac gttctgcaat
     2281 tgcgtttccg taccgaactc ggtctggaac ccggccttca aggtatcaac ggtttcaacc
     2341 agcatcgatg ccagccatgg cctcgaccgg ctgatatcgt cgagcatggc ggggttgccg
     2401 tgcatgcgtg tttccagctt tttccacagc gcgtcgggca gatatcgcga caggcacggc
     2461 gtccggcacg cgccatactt gctgacttca tccgccgaca cgagcaagtc gtcgggcgag
     2521 atttcaagcg cgagaatggg cgatgcatcg agcgcgccga gaatcggctt gcggaacggc
     2581 tggctggcag gatagtcgtc ggcaaaaccg acatgcaacg tgccaagcac gtagatagtg
     2641 acctggcctt tggtggcaac gtagaacggc atatgcgccg gctgcgcctg caccggtcca
     2701 ctggcggtgg tcccgtcgga acggtctaca tcgggcggag ccggacgcgc aggcggcacc
     2761 cttagaccgg gcaacgcgcc cggcaacgaa gcaacggaag taggcggcac tccggcgccc
     2821 ggcggcgagc gcgcgccggt gaccgcgaaa gctaaacgcg gcgcaaggca aaaaacggcc
     2881 agggtggccg ccaccgtcac agcgaaaccc acaacaaaac ggcgcgcaac ctgccgcgcc
     2941 gtttgcggtt caggcatcga tctccccgac ttcctcagcg cgatgacacg agacgtgccg
     3001 cccatcgacg aaacgcagcg ccggttcttc cacgcggcat ttatcgattg catacgggca
     3061 gcgctgatga aatgtgcaac ctgatggagg gttaagcggc gaaggcattt cgccctgcag
     3121 ccggatcttg atgcgccgat cttcttcgaa caaggccggc gtcgcggaca tcagcgcgcg
     3181 cgtgtacgga tgacgcggcc gtgcgtagat cgttgccttg tcgccaagtt cggccacacc
     3241 gccaaaatac atcaccatga cgtcatcggc gatatgttcc accaccgaca agttgtgcga
     3301 gatgaacaca tagcttgtac cgaactgctg ctgcagatcc atgaacaggt tcaaaatctg
     3361 cgcctgaatg gatacatcca gcgcggacac gggttcatcg gccaccagga tctgcggatc
     3421 gagaatcatc gcacgcgcga tagcaacccg ctggcgctgc ccgcccgaaa acatgtgcgg
     3481 gtaccgcgcc gcgtgttcgg gccgaaggcc aaccgtgcgc atcatgtgcg cgatacgctc
     3541 ggcgcgctcg gcggacgaca gcttcgtgtt gatcgcgagc ggttcgccca aggtctgctc
     3601 gacagttttg cgcgggttca gcgaagcaaa cggattctgg aacaccatct gcacgcgttg
     3661 ccgcaagtcg gccaccttcg cgcgactggc gttcgccacg tcttcgccgt cgatcagcaa
     3721 acgcccggac gtaggcgctt cgatcatcgt caactggcgc gccagcgtcg atttaccgca
     3781 accggattcg cccaccacgg cgagcgtctt gccgcgttcg agcgagaacg acacgccgtt
     3841 caacgccttc acggtgccct gctggaacat gctgcgcttg acggtgtagt gcctggtcag
     3901 tttatcggcg acgaggacgg tgtctttagt gaaagtctca ggaacggcat tcatcgcgcg
     3961 cctccatggt ctgccacgag ttccatgttc agcggcttga tgcagcgtgc gcgcactgcc
     4021 ggatcattcg gggcgagttg aaagagcgcc ggccgcgcct tgcggcaatc gtcgacggcg
     4081 tagctgcagc ggggggcgaa caagcatccc gttggacggt catcgcggcc cggcaccatg
     4141 cccggcaagg ccgcgagacg ctcggcgccg cggctatgct cgggaatagc ggcgagcagc
     4201 gcttccgtgt acggatgatg cggctcgctg aagatagtcg gcacgtgatt cgtttcgata
     4261 atctcgcccg cgtacatcac ggccacgcgc tgcgcaacct cggacacgac cgcgagatcg
     4321 tgcgagatca gcacgagcgc catgccgcgc tccttctgca gcttgaccag caactccatg
     4381 atctgcgcct ggatggtgac gtcgagcgcg gtggtcggtt cgtcggcaat cagcagcttc
     4441 ggattgcacg cgaccgccat cgcgatcatc acgcgctggt tcatgccgcc ggacatttgg
     4501 tgcgggaagg catcaatgcg gctcttcgcg tcaggaatcc ccacttgatc gagcaattcc
     4561 agcgcgcgtt gttgcagctt cgcgcctctc aggccttcgt gaagcttgag gacttccttg
     4621 atctgatagc cgacggtgta gctcgggttc aggctcgaca acgcgtcctg aaagaccatg
     4681 gcaatgtcct tgccgataat cttcctgcgt tgccgcgccg acgccttcag caagtcgacg
     4741 ccgttgaacg tgacctgatc ggcggtgaca atgccgggtg catcgatcaa gcccatgagc
     4801 gccatcatcg tgacgctttt accggaaccc gattcgccga caacgccaac cacttcgccg
     4861 ggtttgacgg acatatcgat tcgatcaacc gccgggagtc cattgaaact cacagcgaga
     4921 ttgcggatgg ttagaagatc gttcatgtca cgccatccgc tttagtttgg gatcgagcgc
     4981 atcgcgcagc ccgtcgccga gcaggttgat caccaggacc gaaatcagga tggaaagccc
     5041 aggcatggtc acgatccacc acgcactttc gatgtaatca cgcgccgacg ccagcatcgc
     5101 gccccactcc gccgctggcg gttgcacgcc gaggccgaga aagccgagcg cggcggcatc
     5161 cagaatggcg gacgaaaaac cgagcgttgc ctgcacgatc agcggcgcag cgcagttcgg
     5221 cagcacttgc gagaacatca gccgcacggt gccggcaccg gccacgcgcg acgccgtcac
     5281 gtattcgcgc tgcagttctc ccagcgcggc ggcacgggtc agacgcacgt aacccggcaa
     5341 cgcgacaatc gcgatggcga gcatggtgtt aatcagcccc ggcccgataa tcgcgaccac
     5401 cgcgaccgcc agcagcagcg aaggcagcgc gagcagcacg
//
LOCUS       DATGBK010001129         1531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_13275, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001129 DATGBK010000000
VERSION     DATGBK010001129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13275"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1143)
                     /locus_tag="VKJ77_15765"
     CDS             complement(<1..1143)
                     /locus_tag="VKJ77_15765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HMC46776.1"
                     /translation="MKPDTAGSASGVRTSSRLSGLLGDLTGGAVSTLVMLCYAMSLGT
                     MIFSADLARYAELGVPTALVSCVVTALVIALMSSMRLNIAGPDSNATAFLAGVAAGVA
                     SSVRADGGSTQTVLLTVLMAIALCSVVTGTILYAIGSSRRSRSLQFLPYPVVGGFLAG
                     TGYLLLSGAFRVLTGEPLHWRTLVFLTHLHWLAWMPAVLVGVLITVLMRSWKHAAALP
                     LVLVFGVALFYFLLHVDGLSIDDARKMGLLLPHARLHLSQIPELHLPGPLLHGNVDWA
                     AIGAHLPETLVVTSASAITILMNSTAIGAATGEDIDLNREMRAAGIANLASGMLGGMV
                     GYQSFNRSMLNSRAGATSRMAGVFASLACLVVLVVSPDFVALFPVPV"
BASE COUNT          328 a          474 c          483 g          246 t
ORIGIN      
        1 caccggcacg gggaacaggg caacgaagtc tggcgagacg accagcacaa caaggcacgc
       61 gagggacgcg aacacgccgg ccatccggct tgtcgcgccc gcgcgcgagt tgagcatcga
      121 ccggttgaac gattgatagc cgaccattcc acccagcatc ccgctcgcca ggttggctat
      181 acccgccgcc cgcatctcgc gattcaggtc gatatcctcg cctgtcgccg cgccgatcgc
      241 agtcgagttc atcaggatcg tgatcgccga cgccgacgtg accacgagcg tctccggcag
      301 gtgcgcaccg atggccgccc aatcaacgtt gccgtgcaag agcggtcccg gcagatgcaa
      361 ttcgggaatc tggctcaaat gcaatcgggc atggggaagc aacagaccca tcttgcgcgc
      421 gtcatcaatc gacaggccgt cgacgtgcag caggaagtag aaaagcgcga caccgaacac
      481 caggacgagc ggcagcgcgg cagcgtgttt ccagctgcgc atcagcaccg tgatgagtac
      541 cccaaccagc acggcaggca tccaggcgag ccagtgcaga tgcgtcagga acaccagcgt
      601 gcgccagtgc agcggctcgc cggtcagtac gcgaaacgct cccgacagca acaggtagcc
      661 cgtgccggcc aggaatccgc ctacaaccgg atagggcagg aactgcagtg agcggctgcg
      721 cctcgacgaa ccaatcgcgt aaaggatcgt acccgtcacc actgaacaca gcgcgatggc
      781 cattagcacg gtcaacagga cggtctgcgt cgatccgccg tccgctcgca cgctgctggc
      841 gacgcctgcc gcgacgcctg cgagaaaagc tgtcgcattg ctgtcgggcc ccgcgatgtt
      901 cagccgcatc gaactcatga gcgcgatgac cagcgcggtc acaacgcaac tgacgagcgc
      961 ggtgggcacg cccagttcgg cataacgggc aagatcggca ctgaagatca tcgtgccgag
     1021 actcattgca tagcagagca tgacgagcgt cgatactgcg ccaccagtca ggtcgccgag
     1081 caggccggag aggcgggagc ttgttcgaac gccggaggct gaaccggccg tgtctggctt
     1141 cacggtgctc cccgacgaat gcaggtggtc gtgcttcgga cgtcgctgga agagggattt
     1201 agtatccgcc gcgggtttcg ttcgtgtcaa attgcctaca tctggtcgcg tgacgcctac
     1261 actgtgtatt cacgggcaaa cgtcggaaca gggaacagcc cgtgtgggtt cgatgctgca
     1321 aatcgtgcag cgtcaattcg tctgatttct ggtcaggcgg acagatacgt gttgagcagc
     1381 gagggaaacc gagccgcgtt gctgcccaac gagggccgct gcttcgggaa acggcgttcg
     1441 gtgacggtca tggatattga acgatggctg agcctgttgg cgctcgagca atacgcgcgc
     1501 acatttgccg acaacgatgt cgacttcgcg a
//
LOCUS       DATGBK010001130         4816 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_337235, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001130 DATGBK010000000
VERSION     DATGBK010001130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4816
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337235"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1505)
                     /locus_tag="VKJ77_15770"
     CDS             complement(<1..1505)
                     /locus_tag="VKJ77_15770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011353392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HMC46777.1"
                     /translation="MNARVPFSDSPPLASYQLTDNLNAAHGRIFLTGTQALVRLVLMQ
                     RQLDRAAGLNTAGFVSGYRGSPLGMVDQQLWKAKKLLASHDVRFLPAINEELGGTAVL
                     GTQRVESDPERTVEGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGC
                     VSSSMPHQSDQALIAWHMPVVNPSNIADMLEFGLYGWALSRFSGAWVGYKAISETVES
                     GSTVDLDAFQTVWPAPKGFVAPESGLHNRWPDLPSLTIEARLAAKLDAVRYFSKTHSI
                     DKWIAPSQHANVGIVTCGKAHLDLMETLRRLDLTVDDLDAAGVRIYKVGLSFPLETTR
                     LDTFVEGLSEVLVIEEKGPVIEQQIKDHLYNRTHGARPIVVGKTAQDGAMLLSALGEL
                     RPSRVLPVFADWLARHKPALDRRDKVVDLVAPQILSNAADAVKRTPYFCSGCPHNTST
                     KVPEGSIAQAGIGCHFMASWMERDTTGLIQMGGEGVDWASHSMFTKTPHVF"
     gene            1757..2407
                     /locus_tag="VKJ77_15775"
     CDS             1757..2407
                     /locus_tag="VKJ77_15775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006484065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HMC46778.1"
                     /translation="MKLYYWPKTRAFRALWMLEELRVPYEFAYVNIRAGEQNGPAFCS
                     VNPMSKLPALDDDGVCVAESGAVLLYLADKYPQAGLGVPVDDPLRGRFLQWMFFTGAC
                     LEPAMAEKMTGAPGNSVSFGWGDLGRVEKAIESALAHGPWLLGERFTAADILVSSTLQ
                     IAYMAKLIEPGGVLSDYVARATSREAHERAALIDKQEAQKVPSTASQQTGTASLKP"
     gene            complement(2427..2672)
                     /locus_tag="VKJ77_15780"
     CDS             complement(2427..2672)
                     /locus_tag="VKJ77_15780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013337813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46779.1"
                     /translation="MAEQLFLYGVYSIHVRPIELQGTRWDAEYEIRHHDKTVQSWKTV
                     GGDNGLSNPTDAIDAAHVQAVADIEAGAGIPKPKTFP"
     gene            complement(2738..2968)
                     /locus_tag="VKJ77_15785"
     CDS             complement(2738..2968)
                     /locus_tag="VKJ77_15785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46780.1"
                     /translation="MEDTIYTKGIYTATIGAHAVDGGEFRGVVTLVRDDGEDGEDSEP
                     KQYDVAATSLSEEEALEEARALAHRILGELEL"
     gene            complement(3084..3995)
                     /locus_tag="VKJ77_15790"
     CDS             complement(3084..3995)
                     /locus_tag="VKJ77_15790"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HMC46781.1"
                     /translation="MTSNSTFPQFVSAGDILTDLIRTGPSDWLSRPGGAGWNVARAVA
                     HLGLPTACVGSLGTDNFSDELWDASVAAGLDMRFMQRVERPPLLAIVHKTQPPTYYFM
                     GENGADLAFDPSLLPSGWMDSVKWAHFGCISLVRQPLGDTLARLAAQLREHGVKISFD
                     PNYRNLMEHGYEPTLRKMAALADLIKVSDEDLQKLFPSIPNEADAIAEIRAMNPQATV
                     LVTRGSAEASLHVGNESWQARPPKVDVADTVGAGDASIAGLLYSLMARAGGWPDHLRF
                     ALAAGAAACRMSGAHSPSLEEVEDLLA"
     gene            complement(4008..>4816)
                     /locus_tag="VKJ77_15795"
     CDS             complement(4008..>4816)
                     /locus_tag="VKJ77_15795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HMC46782.1"
                     /translation="TFQLMDRHFWDASAGLYADEATPDWQLSPYRGQNANMHATEALL
                     AAYEATGHVLYLDRAEKIAGNITLRQARLSNGLVWEHYHPDWSIDWNYNKSDSSNIFR
                     PWGFQPGHQTEWAKLLLILERHRALPWLAPRAIELFDAGFNRAWDDQHGGLYYGFGPD
                     NSICDHDKYFWVQAETFATAALLGKRIGLERFWDCYDELWRYSWAHFVDHEYGAWFRI
                     LTCDNRKYGDEKSPAGKTDYHTMGACYEVLNAIGAAVAPQQSRETAKETS"
BASE COUNT          916 a         1444 c         1501 g          955 t
ORIGIN      
        1 tggaacacgt gcggcgtttt cgtgaacatg gagtgcgacg cccaatccac gccttctccg
       61 cccatttgaa tcaggcccgt cgtatcgcgc tccatccacg acgccatgaa gtggcagcca
      121 atcccggcct gcgcgatcga gccttcaggc actttcgtcg atgtattgtg cggacagccc
      181 gagcaaaaat atggcgtgcg tttgacggca tcggcggcat tcgacaggat ttgcggcgcg
      241 acaagatcca cgactttatc gcgacgatcc aacgcgggtt tgtgccgtgc aagccagtcc
      301 gcgaacacag gcaacacacg cgatgggcgc aattcaccga gcgcgctcag cagcatggcc
      361 ccgtcctgcg cggtcttgcc gaccacgatc ggccgcgcgc cgtgtgtccg gttatacaga
      421 tggtccttga tctgctgctc gatcaccggc cctttttctt cgatgaccaa gacctcagaa
      481 agaccctcca cgaaggtatc gaggcgcgtg gtttccagcg gaaacgacag gcccacttta
      541 tagatgcgca cgccggcggc atcgaggtca tcgacggtga gatccaggcg gcgcaacgtt
      601 tccatcaggt ccagatgcgc cttgccgcac gtgacgatgc cgacgttcgc gtgttgactc
      661 ggagcgatcc atttatcgat ggaatgggtc ttggaaaaat accgcacggc gtcgagtttc
      721 gcggcaagac gcgcttcaat cgtcaagctc ggcaagtcgg gccagcgatt gtgcagaccg
      781 ctttcgggcg cgacgaaacc cttcggcgcg ggccacacgg tctggaacgc gtcgaggtcc
      841 acagtcgacc cggactccac cgtctccgat atcgccttgt accccaccca cgcgcccgaa
      901 aaacgcgaca acgcccagcc gtagagaccg aactcgagca tatcggcgat attcgacggg
      961 ttcaccaccg gcatgtgcca ggcgatcagc gcctgatccg actgatgcgg catggacgac
     1021 gacacgcagc cgtgatcgtc gcccgccacg accagcacgc cgccgtgcgg cgacgaaccg
     1081 tacgcattgc cgtgcttgag ggcatcgccg gcgcggtcga cacccgggcc cttgccgtac
     1141 cacatcgcaa agacgccttc cacagtccgc tcgggatccg attccacccg ctgcgtgcca
     1201 agcacagccg tgccgccaag ctcctcgttg atcgcgggca gaaaacgcac gtcatgcgac
     1261 gcgagaagtt ttttcgcctt ccacaattgc tgatcgacca tacccagcgg cgagcctcga
     1321 tagccgctga caaaacccgc ggtattcagc ccggcagcgc gatcgagctg gcgttgcatc
     1381 agcaccagcc gaaccaatgc ctgcgtcccg gtgaggaaga tccggccgtg cgcggcgttg
     1441 aggttatcgg tgagttggta gcttgctagc ggaggactat ctgaaaaagg cacacgcgcg
     1501 ttcatggatg agtctccggc gttttatcgt tgaattgaga ggatgtcgcc attcttcctc
     1561 gacataaccg gaaggttttt gcgttcttgg cgatcgaacg ctcgtaccag aaacgaaatc
     1621 gatctttatt gggatggatg agcggaaatc acctgccgaa tggctaacgt gtggttaacc
     1681 cgcgtctcga aacgctcagg agcgggtaat ctggacgctc cctgacaatg ccgcgccaca
     1741 aaaaaggaat ccgcccatga agctctacta ctggccgaag acgcgtgcgt ttcgtgcgtt
     1801 atggatgctc gaggaattgc gcgtgccgta cgagttcgcc tacgtgaaca ttcgggcggg
     1861 cgagcagaat gggccggcgt tttgctcggt gaatccaatg tcgaagttgc ccgcgctgga
     1921 tgacgacggt gtgtgcgtcg cggagtcggg tgcggtgctg ctctatctcg ccgataaata
     1981 cccgcaagcc gggctcggcg ttccggttga cgatccgttg cgaggccgtt tcctccaatg
     2041 gatgtttttc acgggcgctt gtcttgagcc cgccatggcc gaaaaaatga cgggcgcacc
     2101 gggcaatagc gtgagcttcg gctggggcga tctgggtcgc gtggaaaagg cgatcgaatc
     2161 ggcgttggcc cacggtccgt ggctgctcgg cgaacgcttt acagcagccg atatcctcgt
     2221 ctcgagcaca ctgcagatcg cctacatggc gaagctgatc gagccgggag gtgtgttgtc
     2281 ggattatgtc gcgcgggcga cgtcgcggga ggcacacgaa cgagcggcac tgattgataa
     2341 acaggaggcg cagaaggtgc cgtcaaccgc ttcgcagcag acgggcaccg cgagtctgaa
     2401 gccctgaggt cgcacttgct catgcgtcaa gggaaggtct tgggcttggg aatgcccgcg
     2461 cctgcttcaa tgtcggcgac ggcttgcaca tgggcggcat caatggcgtc ggtgggattc
     2521 gacaagccgt tatcgccgcc aacggttttc cacgactgca cggttttatc gtggtggcgg
     2581 atttcgtatt cggcgtccca gcgcgtccct tgtagttcga tgggccgcac gtggatggaa
     2641 tagacgccgt agaggaagag ttgttcagcc atggtggttc tcccgttcaa gcgaagtgac
     2701 gacgacggcg gtgagcaatc tccgcgtcgc cggcttctca gagttcgagt tcgccgagga
     2761 tccggtgagc gagcgcgcgg gcttcttcca gcgcctcttc ttcggacagc gacgtggcgg
     2821 cgacgtcgta ctgtttcggc tcggaatcct cgccgtcttc accgtcgtcc cgcaccagcg
     2881 tgacaacgcc tcgaaactcg ccaccgtcta cggcgtgggc gccgatggtc gcggtgtaga
     2941 tgcctttcgt gtagatcgtg tcttccatga tgcacctccg gcaaaggttg aaacgatgct
     3001 agcacgcgca tttatcgcgc gtatgaccgt ctctcattgt cgggccgttg aggcggacca
     3061 aacctgaatt tcagacccgg acgtcaggcc agcaaatcct cgacttcttc cagcgacggt
     3121 gagtgcgctc ccgacatccg gcacgccgcc gcgcccgccg cgagcgcaaa acgcagatga
     3181 tcaggccagc cgccggcgcg tgccatcaag ctgtagagca agccggcaat ggacgcatcg
     3241 ccggcgccga ccgtatcggc gacatcgact ttcggcgggc gagcctgcca gctttcgttg
     3301 ccgacatgca gcgaggcttc ggccgatcct cgtgtgacaa gcacggtggc ttgcgggttc
     3361 atcgcacgga tttcggcgat ggcgtcggct tcattcggta ttgagggaaa aagcttctgc
     3421 aggtcttcgt cggagacttt gatcagatcg gcaagcgcgg ccatcttgcg caaggtcggc
     3481 tcgtagccgt gctccatcag gtttcgataa ttcggatcga agctgatctt cacgccgtgc
     3541 tcgcgcaatt gcgcggcgag acgcgcgagg gtgtcgccga gcggctggcg cacgaggctg
     3601 atgcagccga agtgcgccca tttcaccgag tccatccagc cggacggcag gagtgaggga
     3661 tcaaaggcga gatctgcgcc gttttcaccc atgaagtaat aggtcggcgg ctgcgtcttg
     3721 tggacaattg ccagcagcgg tggccgctcg acgcgctgca tgaagcgcat gtcgaggccg
     3781 gccgcgacgc tggcgtccca gagttcatcg gagaaattgt cggtgccgag cgaaccgaca
     3841 catgccgtcg gcaaaccgag atgcgcgacg gcgcgtgcga cgttccagcc ggcaccaccc
     3901 ggtcgcgaca gccagtctga cggtccggtg cggatcaggt cggtcaggat gtcgccggcc
     3961 gagacgaatt gggggaaggt tgaattggag gtcatcgtgc tcaccgttta gcttgtctct
     4021 ttcgctgtct cgcggctttg ttggggcgcg actgctgcgc ctatcgcatt caggacttcg
     4081 tagcacgcgc ccatcgtgtg gtaatcggtc ttgccggcgg ggcttttttc atcgccgtac
     4141 ttgcggttgt cgcaggtcag gatgcggaac cacgcgccat attcgtgatc gacgaaatgt
     4201 gcccagctat aacgccagag ttcgtcgtag caatcccaga atcgctccag accaatgcgc
     4261 ttgccgagca atgccgcggt ggcgaaggtc tcggcctgca cccagaagta tttatcgtgg
     4321 tcgcagatcg agttgtcggg gccaaagccg taatacaggc cgccgtgctg gtcgtcccac
     4381 gcgcggttga aaccggcgtc gaataattcg atggcacgcg gcgcaagcca tggcaacgcg
     4441 cgatgccgct ccagaatcag cagcagcttg gcccattcgg tctgatggcc cggctggaaa
     4501 ccccacgggc ggaagatgtt ggaactgtcg gatttgttgt aattccagtc gatcgaccag
     4561 tcagggtggt aatgctccca gaccaggccg ttgctcaagc gcgcctggcg caacgtgatg
     4621 ttgccggcaa ttttctccgc acgatccagg tacagcacgt ggccggttgc ctcgtacgcg
     4681 gccagcagcg cttcagtcgc gtgcatgttg gcgttctgcc cgcgatacgg cgacaactgc
     4741 cagtcgggcg tggcttcgtc ggcgtaaaga ccggcgctcg catcccagaa atgcctgtcc
     4801 atcagctgga aggttt
//
LOCUS       DATGBK010001131         2665 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_37213, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001131 DATGBK010000000
VERSION     DATGBK010001131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37213"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1155
                     /gene="gatA"
                     /locus_tag="VKJ77_15800"
     CDS             <1..1155
                     /gene="gatA"
                     /locus_tag="VKJ77_15800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006494379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HMC46783.1"
                     /translation="TLGKTNMDEFAMGSSNENSYFDPVKNPWDLKAVPGGSSGGSAAA
                     VAARLAPAATGTDTGGSIRQPASFTGITGIKPTYGRVSRYGMIAFASSLDQGGPMARS
                     AADCALLLNAIASFDPRDSTSLQREDEDYTRYLGQQWSGTDAAKPLAGLRIGLPKEFF
                     GEGLSAEVRSAIDTALKQYEALGATLVDVTLPKTELSIPVYYIIAPAEASSNLSRFDG
                     VRYGHRAAEYTDLLDMYKKSRAEGFGPEVKRRILVGAYVLSHGYYDAYYLQAQKIRRI
                     IAQDFQEAFNHCDVIMGPVAPSVAWNLGEKADDPVQMYLADIYTLSISLAGLPGMSVP
                     CGFGAAGSAHSTRPVGLQIIGNYFNEARLLQVADAFQRATDWHVQSPAGV"
     gene            1152..2630
                     /gene="gatB"
                     /locus_tag="VKJ77_15805"
     CDS             1152..2630
                     /gene="gatB"
                     /locus_tag="VKJ77_15805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HMC46784.1"
                     /translation="MSMQWEVVIGLETHAQLSTVSKIFSGASTQFGAEPNTQACPVDL
                     ALPGSLPVMNRGAVERAIRLGLALGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVV
                     QGGSVTIHVPANERTGAAAYEKTVNLTRAHLEEDAGKSLHEDFAGMTGIDLNRAGTPL
                     LEIVTEPEMRSAAEAVAYAKSLHSLVQWLGICDGNMQEGSFRCDANVSVRPVGQAEFG
                     TRAEIKNLNSFRFLEEAIQYEVRRQIELIEDGGKVVQETRLYDPDKRETRSMRSKEDA
                     HDYRYFPDPDLMPLVIDEAWIARVRSELPELPEAMQTRFVEQYGLTAYDAAGLTSSKG
                     MSAYFESVVGVVGPTHAKLVANWLMGEVSSQLNRDSLDIANSPVSPAQLGLVIQRVAD
                     GTISNKIAKDIFQAIWEEKATDDTAADRIIEAKGLKQISDTGELEAIIDEVMAANQKS
                     VDEYRSGKEKAFNALIGQAMKATKGKANPQQVNELLKKKLSS"
BASE COUNT          547 a          764 c          833 g          521 t
ORIGIN      
        1 acgctcggca agaccaatat ggacgaattc gcgatgggtt cgtccaatga gaattcgtat
       61 ttcgacccgg tcaagaaccc ttgggatctg aaagccgtgc cgggtggatc gtcgggcggc
      121 tcggctgccg cggtcgccgc acgcctcgcg cccgctgcga ccggcacgga cacgggcggc
      181 tcgattcgcc agcccgcatc gttcaccggc attaccggaa tcaagccaac gtacggccgc
      241 gtttcgcgtt acggcatgat cgcgttcgcg tcgtcgctgg atcagggtgg accgatggct
      301 cgcagcgccg cggattgcgc actgttgctc aacgctattg cctcgttcga tccgcgcgac
      361 tcgaccagcc tccagcgcga ggacgaggat tacacacgct atctcggcca gcaatggtcc
      421 ggcacggacg cggccaaacc gctcgccggc ttgcgcatcg gtttgccgaa agagtttttc
      481 ggcgaaggct tgagcgccga agtgcgcagc gcgatcgaca ccgccctgaa acaatatgaa
      541 gcgctcggcg caacgctggt cgacgtcacg ctgccgaaga ccgagttgtc gattcccgtc
      601 tactacatca tcgcgccggc tgaagcttcg tcgaacctgt cgcggttcga tggcgtgcgc
      661 tacgggcacc gcgcggctga gtacaccgac cttctcgata tgtacaagaa gtcgcgtgcc
      721 gaaggtttcg ggccggaagt gaagcgccgc atactcgtgg gcgcgtacgt gttgtcgcac
      781 ggttattacg acgcgtatta cctgcaggca cagaaaatcc gccgcatcat cgcgcaggat
      841 ttccaggaag cattcaatca ctgcgatgtg atcatgggac cggtcgcgcc atcggtggca
      901 tggaatctcg gcgaaaaagc cgacgatccc gtccagatgt atctcgccga tatctacacg
      961 ttgtcgatca gcctcgccgg tttgccgggc atgagcgtgc catgcggttt cggcgctgct
     1021 ggcagcgcgc attccacgcg gccggtcggc ttgcagatca ttggcaacta tttcaacgaa
     1081 gcccggttgc tccaggtcgc cgacgcgttt cagcgcgcga cagactggca tgtgcaatca
     1141 ccggcgggag tatgagtatg caatgggaag tcgttattgg tcttgagacg cacgcgcagt
     1201 tatccaccgt ctccaagatt ttttcgggcg cgtccacgca gttcggcgct gagccgaaca
     1261 cgcaagcctg tcccgtcgat ctggcgttgc cgggttcgtt gcccgtgatg aaccgcggcg
     1321 ctgtcgagcg cgcgattcgt cttggcctgg cacttggcgc gaccattgcg ccgcgcagca
     1381 tttttgcgcg caagaattat ttctatcccg atctgccgaa gggttatcag atcagccagt
     1441 tcgagattcc ggtcgtgcag ggtggcagcg tcacgattca cgttccggcc aatgaaagaa
     1501 ccggcgcggc cgcttacgaa aagaccgtca acctgacgcg cgcgcatctg gaagaagatg
     1561 cgggcaagtc gctgcatgaa gacttcgcgg gcatgaccgg tatcgatttg aatcgtgccg
     1621 gcacgccgtt gctcgagatt gtgacggaac ctgaaatgcg cagcgccgcc gaagcggtgg
     1681 cctacgcgaa aagcctgcac agtctcgtgc aatggctcgg tatctgcgac ggcaacatgc
     1741 aggaaggctc gttccgatgc gacgcgaatg tctccgtgcg cccggtcggt caggccgagt
     1801 ttggcacgcg cgccgagatc aagaacctga actcgttccg tttccttgaa gaagccattc
     1861 agtacgaagt gcggcggcag atcgagttga tcgaagacgg cgggaaagtc gtgcaggaaa
     1921 cgcgtctcta cgatcccgac aagcgcgaaa cgcgttccat gcgcagcaag gaagacgcgc
     1981 acgattaccg ctatttcccc gatcccgacc tgatgccttt agtcatcgat gaagcgtgga
     2041 ttgcgcgggt tcgcagcgaa ttgccggaat tgcccgaagc catgcaaacg cgttttgtcg
     2101 agcaatatgg tttgacggcg tatgacgcgg cggggctgac gtcgtcgaag ggaatgtcgg
     2161 cgtatttcga aagcgtcgtt ggcgtagtcg ggccgacgca tgcgaagctc gtggccaact
     2221 ggctgatggg cgaagtatcg tcgcaactga accgagattc gctggatatt gcgaactcgc
     2281 cagtttctcc cgcgcagctc ggactcgtga ttcagcgcgt ggccgacggc acgatctcga
     2341 acaagatcgc gaaggatatt ttccaggcga tctgggaaga aaaagccacc gacgacaccg
     2401 ccgccgaccg gattatcgaa gcgaaggggt tgaagcaaat ctcggatacg ggcgagctgg
     2461 aagcgatcat cgacgaggtg atggccgcta atcagaagtc tgtcgatgag taccgttcgg
     2521 gcaaggagaa ggcgtttaac gcgctgatcg gccaggcgat gaaagcgacc aagggcaagg
     2581 cgaatccgca gcaggtcaac gagcttttga agaagaaact atcctcttga gctgacggct
     2641 ggactattcg cgggttgctg tcggg
//
LOCUS       DATGBK010001132         3233 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_152037, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001132 DATGBK010000000
VERSION     DATGBK010001132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3233
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152037"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..567)
                     /locus_tag="VKJ77_15810"
     CDS             complement(<1..567)
                     /locus_tag="VKJ77_15810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylhydrolase"
                     /protein_id="HMC46785.1"
                     /translation="MKPALTKPAARQTRWLLAVQTATACAAFAMLAACGGGSDNNNNN
                     TPAGGVKLQVVSFGDSLSDVGTYAPVAAANFGGGRFTTNPGQIWTQNVAQYYGGTLTA
                     ANTGGFGIPLSPASGLGYAQGGSRVTLQPGIGHATPGTANADFSQATTIPINDQVTQY
                     IGTSGSFNANQLVLVNGGANDIFYNLAVE"
     gene            complement(814..2319)
                     /gene="dacB"
                     /locus_tag="VKJ77_15815"
     CDS             complement(814..2319)
                     /gene="dacB"
                     /locus_tag="VKJ77_15815"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HMC46786.1"
                     /translation="MNTPVEARGGNGGGSKAETQKPAPKHATAKKSKFQRVAVPAGPL
                     PATVMAALARAHVPISSMSVVVERIGSDGVPLVAINANQPMMPASTMKLVTTYSGLSL
                     LGPDYRWKTTAYADGEVDASGVLHGNLYIQGTGDPKLVPEELIDLVDQIRRNGITGID
                     GALVLDKRYFDTSTRDLPAFDADENAPYNVGPDPLLYAFKSLSFTLTPSPDGQVAIDV
                     LPQLAQLQIDNELKVTRGACAGSLPAASPSVAQTTGGFVQASFIGDYPLRCGPRTINV
                     AALDHSAFFAGGFLALWKQAGGTFNGTTREGPTPVSARLVGTHRSPVLSDIVRDINKF
                     SNNVMARNLFLTIGAAMGKPPATTQKSAAAIEAFLHRSALPMTGLYLDNGSGLSREEH
                     ITAQSLADLLVAANSSPVAQVFVESLPIAGVDGTMRNRLTNAGAGGNAHIKTGTLRDV
                     RAIAGYVGAQNGESYVVVSFINDPRAEAARAAHDALLEWVYEGARRTGSVE"
     gene            complement(2586..>3233)
                     /locus_tag="VKJ77_15820"
     CDS             complement(2586..>3233)
                     /locus_tag="VKJ77_15820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013696357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator
                     substrate-binding protein"
                     /protein_id="HMC46787.1"
                     /translation="IRLLTVSRIDSGVYDEFLGEFHRTYPRIDLHIEVMRSSDIISSL
                     LQKTATAGLSLCRTPIDKLEQRCFLRQRYAIFCGRYHRLFGRHGLSMEDLLAENFVSF
                     TSDQIGDSLSPLTVFRDQRGFTGRIVAASPSLDEVRRLIFAGYGIGCLPEHIVRDDLT
                     QQRLWRLPPEEGLVDVDVDLLWHRGRKMNAAEQAFLDGMERTMQRYSLPERLAPR"
BASE COUNT          548 a          996 c         1053 g          636 t
ORIGIN      
        1 ctccacggcc aaattgtaga agatgtcgtt ggcgccgccg ttcaccagca cgagctggtt
       61 ggcgttgaac gagccagacg tcccgatgta ctgggtcacc tggtcgttaa tcgggatggt
      121 cgtggcctgc gagaagtcgg cgttcgcggt gcccggcgtg gcatggccaa tccccggctg
      181 cagcgtcacg cgtgagccgc cctgcgcata gcccaaaccg ctggccggtg aaagcgggat
      241 gccgaagcca ccggtgttcg ccgccgtcag cgtgccgccg taatattgcg ccacgttctg
      301 ggtccagatc tggccgggat tcgtcgtgaa gcggccgccg ccgaagttcg ccgccgcgac
      361 cggcgcatag gtgccgacgt ccgagagact gtcgccaaac gacaccacct gcagtttcac
      421 gccgcccgcg ggcgtgttgt tattgttgtt atcgctgccg ccgccgcacg cggccagcat
      481 ggcgaacgcg gcgcacgcag tggccgtctg gacagcgagc aaccagcgcg tttgacgcgc
      541 ggcgggtttc gtcagggcgg gtttcatcga cttcatctcc tcgttcctcg tttatctggt
      601 catgtggtct gcacgccgct tcgaggttgc tgtcggctgg ctttccgctt ggtcgctggc
      661 ttcaaacgac acgcactgcg gacaatgcgc gtcgtcggcc tggcgtggcg atagcttacc
      721 gaatctttaa gaagatttga gatgtttcct acgagggttt gcctgtgctt gcagaccgcg
      781 cgtcctcggg ttccaagtcg gtcaggaact gattcactca accgatcccg tgcggcgtgc
      841 gccctcatac acccactcga gcagcgcgtc atgcgccgcc cgcgctgctt cggcacgcgg
      901 atcgttgata aaactcacca ccacatagct ctcgccgttc tgcgcgccca cgtagccggc
      961 gattgcccgc acgtcgcgca gcgtgcccgt cttgatatgg gcgttgccgc ccgcgcccgc
     1021 gttggtgagc cggttgcgca tggtgccgtc cacgcccgca atgggcagcg actccacgaa
     1081 gacctgtgcc accgggctcg aatttgccgc caccagcaag tcggcgagcg attgcgccgt
     1141 gatgtgttct tcgcgcgaca ggcccgagcc gttatccagg tagagaccgg tcatgggcag
     1201 cgcgctgcga tgcaggaacg cctcgatcgc cgccgctgat ttctgcgtcg ttgccggcgg
     1261 tttgcccatc gcggcgccga tggtcaggaa caggttgcgc gccatcacgt tgttgctgaa
     1321 cttgttgatg tcgcgaacga tatccgacag caccgggctg cggtgcgtgc cgaccagccg
     1381 cgcgctgacc ggcgtcgggc cttcgcgggt ggtgccgttg aacgtgccgc ccgcctgttt
     1441 ccacagcgcg aggaagccgc cggcaaagaa ggcggagtga tcgagcgcgg cgacgttgat
     1501 ggtgcgcggg ccgcagcgca gcggatagtc gccgataaac gacgcctgca caaaaccgcc
     1561 cgtggtttgc gccacgctcg gcgacgccgc cggcagcgag cccgcgcaag cgccgcgcgt
     1621 gaccttgagt tcgttgtcga tctgcaactg cgcgagttgc ggcagcacat cgattgcaac
     1681 ctggccgtcc gggctcggcg tcaacgtgaa cgacagcgac ttgaacgcgt acagcagagg
     1741 gtccgggccg acgttgtagg gggcgttttc gtcggcgtcg aaggcaggga gatcgcgtgt
     1801 ggaggtatcg aagtagcgtt tgtcgaggac tagcgcgccg tcaatgcctg taatgccgtt
     1861 gcggcggatc tggtccacca ggtcgatgag ttcttccggc acaagtttcg ggtcgcccgt
     1921 gccctggata tacaggttgc cgtgaaggac gccgcttgca tcgacttcac cgtcggcgta
     1981 ggccgtggtt ttccagcggt aatccggacc caataacgac aggcccgagt acgtggtgac
     2041 cagcttcatg gtggaggcgg gcatcatcgg ctggttggcg ttgatcgcga cgaggggcac
     2101 gccgtcgctg ccaatccgct cgaccaccac gctcatcgac gagatcggca cgtgagcgcg
     2161 tgcaagcgcc gccatgacag tggccggaag cggaccagcc gggacagcga cgcgctggaa
     2221 cttcgacttc ttcgccgttg cgtgcttcgg cgctggtttt tgcgtttccg ccttcgaccc
     2281 gccaccgtta ccgccgcggg cctcgacagg cgtgttcatt gcgaaggtga aagtggctgc
     2341 ggctataacc agggtcgcgg ctgtgcgcca acgtttggca agtggatttt tcctgttcag
     2401 aaaggctgct ctatacatgt ggtcggatcg tgatgtggtg atgtggtgcg gttttgcgga
     2461 ctgcagggcg agggtgcccc aagaggtgcg gctattgtat gggggttctg cttacggttt
     2521 aaggtttgcg ggctttcaac ctgcagcggg tgtgaagcct tggcgccacg cattccgctt
     2581 ggggctcagc gcggggcgag ccgttcgggc agcgaatagc gctgcatcgt gcgttccatg
     2641 ccatcgagga atgcctgctc cgccgcgttc atcttgcgtc cgcgatgcca cagcagatcg
     2701 acgtcgacat cgaccagacc ttcttccggc ggcaaacgcc agaggcgctg ctgcgtaagg
     2761 tcgtcgcgga caatgtgctc gggcaggcag ccgatgccat accccgcgaa gatcagccgc
     2821 cgcacttcgt ccagactcgg cgacgccgcc acgattcgtc ccgtgaaccc gcgctggtcg
     2881 cgaaacacgg tcagcggcga caagctgtcg ccaatttgat cacttgtgaa tgacacgaag
     2941 ttttccgcca gcaaatcttc catcgacaac ccgtgccgtc cgaacaagcg gtggtagcgt
     3001 ccacaaaaaa tggcatatcg ttggcgcaga aaacaacgct gctcgagttt atcgatgggc
     3061 gtccggcaca agctgagccc cgccgtcgcg gtcttttgca gcagcgacga gatgatgtcg
     3121 gacgaacgca ttacctcgat atgcaggtcg atgcgcggat aagtccggtg gaattcgccg
     3181 agaaactcgt cgtacacgcc tgaatcgatg cggctcaccg tgagcagccg gat
//
LOCUS       DATGBK010001133         2019 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_152038, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001133 DATGBK010000000
VERSION     DATGBK010001133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152038"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /locus_tag="VKJ77_15825"
     CDS             complement(<1..512)
                     /locus_tag="VKJ77_15825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HMC46788.1"
                     /translation="MSTLSFTPDIAVTENAHERASRVKLMIFDVDGVLTDGGLLFTAE
                     GDTMKGFHSMDGHGMKLLRQAGIDTAIITGRKSGIVAARAKEMNVTHVYQGIQDKPQA
                     FADLLQQTGLSADECGYMGDDWVDLAVMLKVGFAAAPANSHPEVIARAHWVSEARGGH
                     GAAREVVDTL"
     gene            complement(512..1495)
                     /gene="kdsD"
                     /locus_tag="VKJ77_15830"
     CDS             complement(512..1495)
                     /gene="kdsD"
                     /locus_tag="VKJ77_15830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose 5-phosphate isomerase KdsD"
                     /protein_id="HMC46789.1"
                     /translation="MIAKINGDRALALARTVLEIEADAVRGLSAQLDDNFTGAVEFLL
                     GCKGRVVVSGIGKSGHIARKFAATLASTGTPGFFVHPAEASHGDLGMVTADDVFIALS
                     NSGETSELIAILPIIKRLGAKLIAITGRPESSLAKLADVHLNAHVDKEACPMNLSPTA
                     STTAVLALSDALAVAVLDARGFGPDDFARSHPGGALGRRLLTYVRDVMRVGPEVPEVP
                     LNATVSDALFQITAKRMGMTAVVNEKRHVEGIFTDGDLRRILQRDGDFRALPLIDVMT
                     RNPRTIGPDHLAVEAVELMERYRINQMLVVDENAILIGALNMHDLFSKKVI"
     gene            1676..>2019
                     /locus_tag="VKJ77_15835"
     CDS             1676..>2019
                     /locus_tag="VKJ77_15835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0010468 - regulation of gene expression
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HMC46790.1"
                     /translation="MTSPLEMTLLLLLCSVAGVVVFRFFNLPPMLGYLAVGIIVGPHA
                     AGIAPDSERAQHLAEFGVVFLMFSIGLEFSLSKLRSMRRIVFGLGASQVAGTIALALL
                     FGWIANFWTDMS"
BASE COUNT          353 a          617 c          638 g          411 t
ORIGIN      
        1 aacagcgtgt cgacgacttc gcgcgccgcg ccatggccgc cgcgcgcctc gctgacccaa
       61 tgagcgcgcg cgattacttc aggatgcgag ttggcgggcg ctgcggcgaa gccgaccttc
      121 agcatcaccg cgagatcgac ccagtcgtcg cccatgtagc cgcattcgtc cgcgctcagt
      181 ccggtttgct gcaaaaggtc cgcaaacgcc tgaggtttgt cctgaatccc ctgataaacg
      241 tgcgtgacgt tcatctcctt cgcccgcgcc gcgacgatgc ccgacttgcg ccccgtgatg
      301 atcgcggtgt cgatgccggc ctggcgcagc agcttcatgc cgtggccgtc cattgagtgg
      361 aagcccttca tcgtgtcgcc ttccgccgtg aacagcagac cgccgtcggt cagcacgccg
      421 tcgacgtcga aaatcatcag cttcacgcgg cttgcgcgct cgtgcgcgtt ttccgtcaca
      481 gcaatatccg gcgtgaaaga caaggtcgac atcagattac cttcttggaa aagaggtcat
      541 gcatgttcag ggcgccgatc aggatcgcgt tttcatcgac gaccagcatc tgattgatgc
      601 gataacgctc catcagttcc accgcttcca ccgcgagatg gtccggaccg atcgtgcgcg
      661 gattacgcgt catgacatcg atcagcggca gcgcgcggaa atcgccgtcg cgctgaagaa
      721 tccggcgcag gtcgccgtct gtgaagatgc cttcaacatg acgcttttcg ttgaccacgg
      781 ccgtcatgcc catgcgcttg gcggtgatct ggaagagggc gtcggagacg gtggcgttca
      841 gcggcacttc cggcacttcc ggcccgacgc gcatcacgtc gcgcacgtaa gtgagcaggc
      901 gccggccgag tgcgccgccc ggatgcgagc gcgcgaaatc gtcggggccg aaaccgcggg
      961 cgtcgaggac ggcgactgcg agcgcgtcgc tcaatgcgag cacggccgtt gtactggcgg
     1021 tcggcgagag attcatcggg caggcttctt tatcgacgtg cgcattcaga tgcacgtcgg
     1081 cgagtttcgc gaggcttgat tccggccgcc cggtgatggc gatcaatttt gccccgaggc
     1141 gcttgatgat gggcagaatg gcaatgagtt ccgaggtttc gcccgagttc gacagagcga
     1201 tgaacacgtc gtcggcggtc accatgccga ggtcgccgtg gctcgcttcg gccggatgaa
     1261 cgaagaagcc gggcgtaccc gtgctcgcga gcgtagccgc gaatttgcgg gcgatatgcc
     1321 cggatttgcc gatacccgat accaccacgc ggcccttgca tccgagcagg aattcgacgg
     1381 cgccggtgaa gttgtcgtcg agttgtgcgg acaggccgcg cacagcgtcg gcttcaattt
     1441 cgagcacggt gcgagccagc gcgagtgccc ggtcgccatt gattttcgct atcatgcgcg
     1501 aagtataaca aaggcatctt tgcgccgcgc cggacccggg gcggccttca gccgctcatc
     1561 cgcccccgaa aggccgtgtg ttttgttgcg cgcaacgctc gcgcgcgtta aaaaacacaa
     1621 gatccggatg tgctccccga gccgccatcc gccgacaaac gaggacgcta gacggatgac
     1681 ttccccgctt gaaatgacgt tgctgttgct gctgtgttca gtggcagggg tcgtcgtatt
     1741 ccgctttttc aacctgccgc ccatgttggg ctacctggcg gtcgggatca ttgtcggacc
     1801 acacgctgcc ggcatcgcgc cggatagcga acgcgcgcag catctggcgg aattcggcgt
     1861 tgtgttcctg atgttttcga tcgggcttga attctcgtta tccaaattgc gttcaatgcg
     1921 acggattgtg ttcggtctcg gcgcgagtca ggtggccggg acgattgcgc tggcgctgtt
     1981 gttcggatgg attgcgaact tctggaccga catgtcgtg
//
LOCUS       DATGBK010001134         3214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_128993, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001134 DATGBK010000000
VERSION     DATGBK010001134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3214
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128993"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..2319
                     /locus_tag="VKJ77_15840"
     CDS             199..2319
                     /locus_tag="VKJ77_15840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HMC46791.1"
                     /translation="MTIGVTSTARAQTASPEATENVLPAVKVQAAKDPLPGDFAPAYD
                     GGQIARGAKFGVLGNQEMINVPFSMTSYTSKAIEDQQAHSVGELLSHDPGVRPAFGFG
                     NFSEVFVIRGFQLTGDDISLNGLYGITPRQLVATEVLERVDVFKGANAFLNGASPTGS
                     AVGGGINLELKRADDKPLTRVTVEGSGSGQLGTHVDVGRRFGSDGQFGIRVNSSILGG
                     ETSINDEFRHNTSTAVSLDYRGDKVRLYGDFLYQRRNIDQGRSTVSVSGDQVPTVPSA
                     ANNFAQPWTQSTLEDTVGIARAEYDFAPAWTAYVSGGIHRSHEDGTYSSPSFNADTGT
                     TATRGDILRTTDALSAEGGVRGHFSTGPVSHLVSAGFAITTLEDREAFAFSGSFPTSL
                     YGGGLVPEPAANGFVAGSFADPGLADQILTRSVAISDTLGFLNDRVLFTIGARHQQLH
                     QNNFTVGTDTISSSYDQSITTPIFGLVVKPTNNIALFANRSESLSAGQTAPFGAANVG
                     QTLSPNRTKQYEVGAKYDTSHFGATLSAFQIEQPSAYTDSTTNVFGANGTQRHRGLEF
                     SVYGQPMQGVRVLAGATLINAKQLDTNGGATDGLRPVGVPSYLFNVGAEYDLPMLPGV
                     TVNAAWIHTSNQYLDAQNKLSIPAWDRFDLGARYTTSVLKHVTTFRATVENVTNKAYW
                     ASTTGAYLTQGKPRTLLLSMTTDF"
     gene            complement(2704..>3214)
                     /locus_tag="VKJ77_15845"
     CDS             complement(2704..>3214)
                     /locus_tag="VKJ77_15845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HMC46792.1"
                     /translation="FLFYSGNLLWIESRRKLERGGDAPRQRPSTYFMAALTVGVTLGC
                     VAGISATLAAGKLLNGRVADLSAWHARIYYAVFLASIAWAFVRGGARGSVELLALTTG
                     ATLLVPLASVVGWLFPSTGLWFEPAVAGVDVCALIGAGCFAWMLQATAKRAATGRQDS
                     VWGYSARTR"
BASE COUNT          648 a         1054 c          922 g          590 t
ORIGIN      
        1 ttcctgatgg cgccacgagc gcgcgattcc cgtccgtccg ctgcttacgt ccgctactta
       61 cctggtcgca ctcaccccgc aaccgcttcg cgtgccaact acctaatcgc catgtctact
      121 tttaccggtt catcgtccgt ccgaccgtta tccaacgccg tccgcctcgc gtttgtctac
      181 gcggctctcc ccctgacaat gaccattggc gtaacgtcca ccgcccgggc acagaccgct
      241 tcgcccgaag cgacggaaaa cgtcttgccc gcggtgaagg ttcaggcagc caaggacccg
      301 ctgccgggcg atttcgcccc cgcctatgac ggcggccaga tcgctcgcgg tgcaaagttc
      361 ggagtgctcg gcaatcagga aatgatcaac gtgcccttca gcatgacgag ctatacgtcg
      421 aaggcaatcg aagatcaaca ggcgcattcg gtcggcgaac tcttgtctca cgatcccggc
      481 gttcgtccgg ccttcgggtt tggcaatttc tcagaagttt tcgtcattcg cggctttcag
      541 ctgactgggg atgacatctc gttgaatggt ctgtacggga ttacgccgcg ccagctggta
      601 gcaaccgaag tgctggaacg ggtggatgta ttcaaaggcg ccaacgcttt cctgaacggg
      661 gcgtcgccga ctggttccgc ggtgggtggc ggcatcaatc tggaactgaa acgcgcggac
      721 gacaaaccgc tcacgcgcgt gaccgtggaa ggcagcggtt caggacaact aggaacccac
      781 gtcgatgtcg gccggcgctt cggcagcgac ggacagttcg gcatccgtgt caacagttcg
      841 atcctcggag gcgaaacaag catcaacgat gaattccgcc acaacacctc aacggctgtc
      901 tcgcttgact atcgcggcga caaagtgcgt ttgtatggcg attttctcta tcaacgcaga
      961 aatatcgatc aagggcgttc gacggtttcc gtgagcggcg atcaggtgcc aaccgttccg
     1021 tccgcggcca acaactttgc ccaaccctgg acgcagagca cgctcgaaga cacagtcggt
     1081 atcgcgcggg ctgaatacga cttcgcgccc gcatggacgg cgtatgtgag cggcggcatc
     1141 catcgctcgc atgaggacgg cacgtactcg tcgccgagct tcaatgctga taccggcaca
     1201 accgcgacgc gcggcgacat cttgcgcacc accgatgcgt tgtctgccga aggcggcgta
     1261 cgggggcact tttccaccgg gccggtcagc catttggtca gcgcgggttt cgcgatcacg
     1321 acgctcgagg atcgtgaagc gttcgcgttc agcggctcgt tcccgacaag cctctacgga
     1381 ggaggcctcg tgcccgagcc tgcggccaac ggttttgttg cgggaagttt cgccgatccg
     1441 ggtcttgccg accagatcct gacgcgcagt gtggccatct ccgacacgct cggtttcctg
     1501 aacgatcgcg tcctgttcac gatcggcgcg cgccatcagc agttgcacca gaacaacttc
     1561 acggtcggca cggacaccat ctcgtcttcg tacgaccagt cgatcacgac ccccatcttc
     1621 ggcctcgtcg tgaagccgac gaacaatatc gcgctgttcg cgaaccgcag cgaatcgctg
     1681 agcgccgggc agactgcgcc ttttggcgcg gccaacgtgg gccagacgct ctccccgaac
     1741 cggacgaagc aatacgaagt gggcgcgaaa tacgacacca gccacttcgg tgcgacgttg
     1801 tcggcattcc agatcgagca gccgtcggcc tacaccgaca gcacgaccaa cgtgttcggc
     1861 gccaacggca cgcagcgaca ccgcggtctt gagttttcgg tgtatggcca gccgatgcaa
     1921 ggtgtgcgcg tgctcgcagg cgcgacactg atcaacgcca agcaactcga cacgaacggg
     1981 ggagccaccg acggcttgcg cccggtcggt gtgccgagct atctgttcaa cgtcggcgcg
     2041 gaatacgatc ttccgatgct gcccggcgtc acggtcaatg ccgcgtggat ccacacgagc
     2101 aaccagtacc tcgacgcgca gaacaagttg tcgattcccg cttgggaccg tttcgatctc
     2161 ggcgcgcgct acacgacgag cgtcctgaaa cacgtaacca cgttccgggc gaccgtggag
     2221 aacgtgacga acaaggctta ctgggcctcg acgaccggcg cgtacctgac tcaggggaag
     2281 ccgcgtacgc tgctgctttc gatgaccacg gacttctgaa aacggggttt gccgtgaacc
     2341 ggtttttgta gagacgtggc cggtagcaac gggtctgttc atcgaacgta tggcatggca
     2401 gccatgccag aaatcgtggt cggatgcttt gtaaatgcgg ggcatcatga cgtagctcac
     2461 gatgccccgc attctgttca gtaggacatg ttgccttaac caggttgatc gatagaaccg
     2521 cgcctttgca gcgcatgcga tggtcctccg tggcgacgca gcgctcgctt atgcccggct
     2581 ctgaagagac cgtaacgtcg gaaagttagc gccaaacttc aggcgagttg gcctagcagc
     2641 ggcaatctgc agtcgcctcc ttccggtatc agacggagcg ccgcggccgc cactcaaccg
     2701 ccatcaccgg gtgcgagcgg aatatcccca tacgctatcc tgccggcctg tcgcggcccg
     2761 cttcgcggtt gcctgcagca tccaggcaaa acaccctgcg cctatcagcg cacacacatc
     2821 caccccggcc accgcaggct caaaccacag ccccgttgag gggaaaagcc acccgacaac
     2881 tgaagccagc ggcaccagca aagtcgcgcc tgttgtcagc gccaacagct cgaccgatcc
     2941 acgcgctccg cctcgcacga acgcccacgc aatactcgcc aggaacaccg cgtaatagat
     3001 ccgtgcgtgc cacgccgaca aatccgccac gcggccattc agcaacttcc ccgctgcgag
     3061 cgtcgcggaa ataccggcca cgcaacccag cgttacgcca accgtcagcg ccgccatgaa
     3121 gtaggttgac ggccgttgcc tgggcgcatc gcccccccgt tcaagcttcc ggcgactctc
     3181 gatccaaagc agattgcccg aatagaacaa gaac
//
LOCUS       DATGBK010001135         1587 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_222215, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001135 DATGBK010000000
VERSION     DATGBK010001135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222215"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(299..>1587)
                     /locus_tag="VKJ77_15850"
     CDS             complement(299..>1587)
                     /locus_tag="VKJ77_15850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46793.1"
                     /translation="VDAYALAFAALMLSAGVLGDRFGARRLFVAGLMLFGVASAACGF
                     ATDATQLVAARALQGIGAAAMLPNSLVLLNQACGHDDGLRARAVGLWTAAGAVAIAAG
                     PIVGGLLIAGFGWRSIFWVNVPLCVAGIVATYLWIADKKPEQQARGIDLPGQILATVA
                     LTGFVGAMIELRPLGLTHPLVIGAIAIALLAVVGLVLVERRASAPMLPPELFRDRTFN
                     SATVFGMCVNLTYYGMVFVLSLYLQRVLGHTPLEAGLAFLPLTGGFLLSNLASGVVVA
                     RFGSRLPMIVGALIDAAGFAALLFVNASTPVVALLLPFLLIPTGMGLAVPAMTTAVLG
                     TVAPDRAGTASAVLNTARQAAGAIGVAAFGALASHSGMAESAQIVVGVKASAGVSVAL
                     LLFAAVLAWRAIESKRAKDDKAPEAVSVKCGTGTRR"
BASE COUNT          312 a          539 c          499 g          237 t
ORIGIN      
        1 aagacatggt gtcccgttgt tcggatctgc aggtaccagc ggcgtcgcgg aatccggacc
       61 gtcgggtaaa tcgggatcgt ccgggggcgg cggtaaatcg gggtcgagca gctcgtcggg
      121 atcgggttcg atcggcaagt aggttgggtc cggcggcggc gtggacatgt ccagttcctc
      181 attggcggcc tgcggaccgc gcgttgcacg agaagtgcat atttcacatc agacttcaca
      241 cctgacgcaa cgagcgttcc cgcgcggtcc cttcgccgtc atcctgcatg catcatgctc
      301 agcggcgggt ccccgtgccg catttaaccg acaccgcctc tggcgcttta tcgtcctttg
      361 cgcgcttgct ctcgatcgcc cgccacgcga ggactgcggc gaatagcaac aacgccacgg
      421 atacccccgc cgacgccttt acacctacta cgatctgcgc gctttccgcc atgcccgagt
      481 ggctcgccag cgcaccgaaa gcggcgacgc ctatcgcgcc ggccgcttgc cgcgcggtgt
      541 tcagcaccgc cgacgccgtg cctgcccgat ccggcgcaac cgtgcccaat acggcggttg
      601 tcatcgcggg gacggcgagt cccatgcccg tcggaatcag caagaagggc agcagcaatg
      661 caaccacggg cgtggacgca ttgacgaaaa gaagcgcggc gaaaccggct gcatcgatca
      721 aggcgccaac gatcatcggc aagcgcgagc cgaagcgcgc gacgactacg ccgcttgcaa
      781 gattcgataa caggaacccc ccggtgagcg gcaggaacgc cagcccggct tccaaaggtg
      841 tgtggccaag cacgcgctgg aggtacaggc tcagcacgaa caccatgccg taatacgtga
      901 ggttcacgca catgccgaac accgtggccg aattaaacgt gcggtcccga aacagctcgg
      961 gcggcagcat gggcgctgac gcgcgccgct cgaccagcac aagtcccacg accgcgagaa
     1021 gcgcgattgc aattgcgccg atcaccagcg ggtgcgtcag gcctaacggc cggagctcga
     1081 tcatcgcgcc gacaaagccg gtcagcgcaa cggtcgcgag gatttgtccg ggcaagtcga
     1141 taccgcgcgc ttgttgctcc ggctttttat cggcgatcca caggtaggtc gccacgatgc
     1201 ctgctacgca taacggcacg ttgacccaga aaatgctgcg ccagccgaac ccggcaatca
     1261 gcaggccgcc tacgatcggc cctgcagcaa tcgccactgc gcccgccgcg gtccacaagc
     1321 ctacggcacg cgcccgcagt ccgtcgtcgt gaccgcaagc ctggttgagc agcaccagcg
     1381 agttgggcag catcgcggcc gcgcctatgc cctgcaatgc gcgtgcagcg accagttggg
     1441 tcgcgtccgt tgcaaagccg caagcggcgg aagccacccc gaacagcatc aggcccgcga
     1501 cgaacaagcg ccgtgcgccg aaccggtctc cgagcacgcc tgccgagagc atcagcgcgg
     1561 cgaaggcaag cgcgtaggcg tcgacgg
//
LOCUS       DATGBK010001136         2930 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_129024, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001136 DATGBK010000000
VERSION     DATGBK010001136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129024"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..784
                     /locus_tag="VKJ77_15855"
     CDS             <1..784
                     /locus_tag="VKJ77_15855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HMC46794.1"
                     /translation="SVFVTALYSFRMYFLVFHGKERFRGPKHPESPMAIEAAAHAHDS
                     HGHDAHGHDDHGHGHGPHVPHETPWVITLPLILLAIPSVIIGAIAIGPMLFGDFFAHG
                     VVFDKVIFIGENHPALHEMAEEFHGWFAMGLSSVEGLPVWLALAGVVVSWFLYWKRTD
                     LPGVIKQRFLPIWTLLDNKYYLDKINEVVFAKGAVAIGRGLWKEGDVAVIDGIVNGLA
                     KFVGWFAGVIRFLQSGYIYHYAFAMIIGMLGLLTLFVTLGGK"
     gene            802..2292
                     /locus_tag="VKJ77_15860"
     CDS             802..2292
                     /locus_tag="VKJ77_15860"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006025113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HMC46795.1"
                     /translation="MHSLPILSLAIWLPIIVGILVLAIGNDSNPGPSRWLALIGSILG
                     LIVTIPLITGFDNASAALQFEEKAVWIDRFNISYHLGVDGLSMWFVVLTALITVITII
                     SAWEVITVRVAQYLAAFLILSGLMIGVFSTADGMLFYVFFEATLIPMYIIIGVWGGAN
                     RVYAAFKFFLYTLMGSLLMLIALLYLYTQTHTFDIATWHALKIGFTPQVLLFIAFFLA
                     FAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFIRFSLPIAPDASHFLAP
                     VVITVSLIAVIYIGFVALVQEDMKKLVAYSSIAHMGFVTLGFFIFSTLGMEGAIIQMI
                     SHGFVSGAMFLCIGVLYDRMHSRRIADYGGVVNVMPKFAAFAMLFAMANCGLPGTSGF
                     VGEFMVILAAVKFNFWIGFLATFTLVLGAAYTLWMYKRVHFGGIANDHVAKLKDINKR
                     EFFMLAVLAVFTLYMGLYPKPFTDVMHASVENLLSHVAQSKLPLAQ"
     gene            2317..>2930
                     /locus_tag="VKJ77_15865"
     CDS             2317..>2930
                     /locus_tag="VKJ77_15865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004201477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HMC46796.1"
                     /translation="MQNAPMSALLPDGLLMLMVVVAWLNDTIFGVKSRHTTYLISVVS
                     AIVVGVWFAFQALDPTPHYYFTRMYVVDPFASAMKAVVTLGFAVSIIYSRKYLEDRDL
                     FRGDFFLLGLFSLLGQCVMISGNNFLTLYLGLELMSLSLYAVIALRKDSPQANESAMK
                     YYVLGALASGFLLYGISMLYGATGSLELNEVAKAIATGRINDAVL"
BASE COUNT          492 a          828 c          869 g          741 t
ORIGIN      
        1 aagcgtgttc gtcacggcgc tgtattcgtt ccgcatgtat ttcctggtgt tccacggcaa
       61 ggagcgtttc cgcggtccga agcatccgga aagcccgatg gcgattgaag cggccgcgca
      121 tgcgcatgat tcacatggtc acgatgcaca cggccatgac gatcatgggc atggtcacgg
      181 cccgcacgtt ccgcacgaaa cgccttgggt cattacgctt ccgctgatcc tgctggctat
      241 tccgtcggtg atcatcggcg ctatcgcgat cggcccgatg ctgttcggcg atttcttcgc
      301 gcacggcgtg gtgttcgaca aggtgatctt catcggcgaa aaccatccgg cgctgcatga
      361 aatggccgag gaattccacg gctggtttgc gatgggcttg agttcggtcg agggcctgcc
      421 ggtgtggctg gcgctcgcgg gcgtggtcgt gtcgtggttc ctgtactgga agcgcacgga
      481 tctgccgggc gtgatcaagc aacgcttcct gccgatctgg accttgctcg acaacaagta
      541 ctacctcgac aagatcaatg aagtcgtatt tgcaaagggt gcggtcgcca ttggccgcgg
      601 actctggaaa gagggcgatg tcgcggttat cgacggtatc gtcaacggcc tcgccaagtt
      661 cgtcggctgg tttgccggtg tgattcgctt cctccaatcc ggttacatct atcactacgc
      721 gttcgccatg atcattggca tgttggggct cttgaccctg tttgtaacgc tcggcggcaa
      781 ataaggcggg gacacctatc tatgcactct ttacccattc ttagtctcgc tatctggttg
      841 ccgatcattg tcggcatcct tgtactggca ataggcaatg acagcaatcc gggcccgtcg
      901 cgctggcttg ctttgatcgg ctcgattctt gggctgatcg tcaccattcc gttgattacc
      961 ggcttcgaca acgcttcggc cgcgctgcag ttcgaagaga aggctgtctg gatcgaccgc
     1021 tttaacatct cgtatcacct gggtgtcgac ggcttgtcca tgtggttcgt cgtcttgacc
     1081 gcgttgatca cggtgatcac gatcatcagc gcgtgggaag tcatcacggt gcgcgtggcg
     1141 caatacctgg ccgcgttcct gatcttgtcg ggcctcatga tcggcgtgtt ctcgaccgcc
     1201 gacggcatgt tgttctacgt cttctttgaa gccacgctga tcccgatgta catcatcatc
     1261 ggtgtgtggg gtggcgcgaa ccgggtttat gccgcgttca agttcttcct gtacacgctg
     1321 atgggctcgc tgctgatgct gatcgcgttg ctgtacctgt acacgcagac gcacacgttc
     1381 gacatcgcta cgtggcacgc attgaagatc ggcttcacgc cgcaagtgct gcttttcatc
     1441 gccttcttcc tggctttcgc cgtgaaggtg ccgatgtggc cggtccacac gtggttgcct
     1501 gacgcccacg tggaagcgcc gacgggtggc tcggtcgtgc tggccgcgat catgctgaag
     1561 ctgggtgcgt acggtttcat ccgcttctcg ctacctatcg cgcccgatgc cagccatttc
     1621 ctggcgccgg tggtgattac ggtgtccctg atcgcggtga tctacattgg cttcgtggcg
     1681 ttggtgcagg aagacatgaa gaagctggtg gcgtattcgt cgattgcgca catgggcttc
     1741 gtcacgcttg gtttcttcat cttcagcacg ctcggcatgg aaggcgcgat catccagatg
     1801 atctcgcacg ggtttgtttc gggcgccatg ttcctgtgta tcggcgtgct gtatgaccgt
     1861 atgcattcgc gccggattgc cgactacggc ggtgtggtca acgtgatgcc gaagttcgcc
     1921 gcgttcgcca tgctgttcgc gatggccaac tgcggcttgc cgggcacctc gggtttcgtt
     1981 ggtgaattca tggtgattct ggctgccgtg aagttcaact tctggatcgg tttcctggct
     2041 accttcacgc tggttctcgg cgcggcttac acgctgtgga tgtacaagcg cgtgcacttc
     2101 ggcgggatag cgaacgatca cgtggcgaag ctgaaagaca tcaacaagcg cgaattcttc
     2161 atgctcgctg tgcttgccgt gttcacgctg tacatgggcc tgtatccgaa gccgttcacc
     2221 gacgtgatgc acgcatccgt agaaaatctc ctctcccacg tcgcgcagtc caaactgccg
     2281 ctggcccagt aacgcgtgcg gaggaaataa aagatcatgc aaaacgcccc catgagtgcc
     2341 ctgttacccg atggactgtt gatgttgatg gtcgtcgtgg cctggttgaa cgacacgatc
     2401 ttcggcgtga agagccgtca tacgacctac ctgatttcgg ttgtgtcggc cattgtggtc
     2461 ggtgtgtggt tcgccttcca ggcgctcgat cccacgccgc attactactt cacgcgcatg
     2521 tacgtggtcg acccgtttgc gagcgcgatg aaagcggtcg tgacgctcgg cttcgcggta
     2581 tcgatcatct attcgcgcaa gtatcttgaa gatcgcgacc tgttccgcgg tgacttcttc
     2641 ctgcttggtt tgttctcgct gctcggccag tgcgtgatga tttcgggcaa caacttcctg
     2701 acgctgtatc tcggcctgga actgatgtcg ctgtcgttgt acgcagtgat cgcgttgcgc
     2761 aaggactcgc cgcaagccaa cgaatccgcg atgaagtact acgtacttgg cgcgctcgct
     2821 tcgggtttcc tgctctacgg tatctcgatg ctgtacggcg cgaccggctc gctcgaactg
     2881 aacgaagtcg cgaaagcgat tgcaacgggc cgtatcaacg acgcggtcct
//
LOCUS       DATGBK010001137         4105 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_198993, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001137 DATGBK010000000
VERSION     DATGBK010001137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4105
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_198993"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1249)
                     /locus_tag="VKJ77_15870"
     CDS             complement(<1..1249)
                     /locus_tag="VKJ77_15870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HMC46797.1"
                     /translation="MTTTSNPDANALEALRLLGPDPDNWVPDRAGIDHNVLIVGGGQT
                     GAAFAFALRRAGIGKVSVIDAAADEAGAGVWLNRARMNKLRTPKTLTGPELSVAGLSF
                     QAWFEARWGAAAYADIDRIPRARWAEYLGWYRHFLKIPIRYATRLTRIEPVDSHFRLR
                     LVNATGDEHVETARKVILCNGVAGNGAAQIPAVLHENLPRSLYAHTSEAIDFNLLKGK
                     AVAVIGGAASAFDAAATALEAGAAQVHLFVRRAAIPAVPITRTRGYPGAYDNYPALPD
                     ALRWRQALRFRQAGSTPPVDAVERVTKHPNFHLHLGAAWSQASAEGGHIAAQVGNEHF
                     RFDFAIAGTGYLVDPAVRPELSAVSKDILFWRDRYVPEDHERDDYLGAHPYLGAAHEY
                     LEKIPGTAPHLANLHVYNPAGLVS"
     gene            complement(1382..2203)
                     /locus_tag="VKJ77_15875"
     CDS             complement(1382..2203)
                     /locus_tag="VKJ77_15875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46798.1"
                     /translation="MRFRFAAFLSFTLSALALSQTVHADATLDRIKSRGTLTVGVVLD
                     GTYGSLDPQTRKPVGYNVELAQDLARRLGVKFEAVEVTPPNRVQFLQQGKVDALIASM
                     QYTKERDEILSYVPTPFEEIGGSAMVHKGAGIHNWNDLRGKPVCVSQGSNYTRPLIEQ
                     YGAQVKGFKGMPEALLALRGGTCVASVHVTPGVQARLTGTSGEWQDYESPIADQLIPS
                     PSVIWVRKGETDTVAALDKIVKEWHRSGFLIDEGNKWHMPPSKQLLAWHREYSSK"
     gene            complement(2200..3822)
                     /locus_tag="VKJ77_15880"
     CDS             complement(2200..3822)
                     /locus_tag="VKJ77_15880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HMC46799.1"
                     /translation="MTSIRNDAAFVDASIVRAWLNDEAEIALLDVREAGQFGEGHPFF
                     AIPLPYSRLEIDAPRLVPRPDTRIVVLDDGEGIAVLAARRLGALGYADVSILRDGARG
                     WQAAGYTLFKGVNLPSKTFGELIEHAYGTPHLSPEELAVLIDEGRAHALFDGRTLDEH
                     RKMTIPGAIPVPNGELAYRIGTLVADPATPIVIHCAGRTRSIIGAQTLRNLGVPNPVI
                     ALENGTQGWALAGLKLEHGSQRRYPEGLNEAAVADAQTRAAKLAARFHVATLDASTAQ
                     EWLADPHRTTFLIDVRTPEEFARDGLPSAIHAPGGQLVQATDQTIGVRRARVLLVDYD
                     GVRAPVIATWLVQLGFEAALIDAAEATALHVGKRTTPVQSSLPLLDTAALREAATGDV
                     LLLDLRSSAAYRREHAAGAHWSIRPQLAKTLVALKATPGDTLLLFADEPAVADIAAAD
                     LRELGFTSLFLADNGIDTWKKAGLPLASTPDLPADEARIDYLFFVHDRHDGNLDAARQ
                     YLDWETGLIAQCAPDELAVFRIDAPATESASQ"
     gene            complement(3856..>4105)
                     /locus_tag="VKJ77_15885"
     CDS             complement(3856..>4105)
                     /locus_tag="VKJ77_15885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005792847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HMC46800.1"
                     /translation="VSFALRDADTSQAAAFIDALQLFGIGASWGGYESLALIAPPRRL
                     RSHSYWQGQEAVIRLHIGLEDADDLILDLAQAFRSVLS"
BASE COUNT          840 a         1269 c         1238 g          758 t
ORIGIN      
        1 agctgacgag gcccgcaggg ttgtacacgt gaaggttcgc aagatgaggc gccgttccgg
       61 ggattttctc cagatactcg tgcgcagcgc caaggtaagg atgggcgccg agatagtcgt
      121 cgcgctcgtg atcttcggga acatatcggt cgcgccaaaa aaggatgtcc ttcgataccg
      181 ccgaaagctc ggggcgcaca gccggatcga caagatagcc cgtacccgca attgcaaagt
      241 cgaaccggaa gtgctcgttg cccacctgcg ccgcaatatg ccccccctcc gcgcttgcct
      301 gactccaggc cgcgccaaga tgcagatgga agttcggatg cttcgtcacg cgctctacgg
      361 catcaaccgg aggtgtcgaa cctgcctgcc ggaagcgcaa ggcctgacgc cagcgcaagg
      421 cgtccggcaa cgcgggatag ttgtcgtacg cacccggata ccctcgagta cgggtaatag
      481 gcacggcggg aatcgcggcg cggcgcacga aaagatgcac ctgcgcggcg cctgcttcca
      541 gcgccgtagc ggccgcgtcg aaggcggatg ccgcaccccc gatcaccgct accgctttcc
      601 ccttaagcaa gttgaaatcg atagcctcgg aggtatgcgc gtagagcgaa cgcggcaagt
      661 tctcgtgcaa cacggccggt atctgtgcgg cgccgttgcc cgctacgccg ttgcacaaga
      721 tgaccttgcg tgccgtctcg acgtgctcgt cacccgtcgc gttcaccagg cgcaaccgga
      781 agtgcgagtc caccggttca atccgcgtga gacgcgtggc atagcgaatc ggaatcttca
      841 ggaagtgtcg ataccaccca agatattcgg cccagcgcgc gcgaggaatc cggtcgatat
      901 ctgcataagc cgccgcgccc caacgcgctt cgaaccaggc ctggaagctc aatcccgcca
      961 cgctgagttc cggcccggtc agcgtcttcg gtgtacgtag tttgttcatg cgcgcccgat
     1021 tgagccagac gcccgcgccc gcttcgtcgg ctgccgcatc gatcaccgac accttgccaa
     1081 taccggcacg ccgcagcgcg aacgcgaatg cggcaccggt ctgtccaccg ccgacgatca
     1141 agacgttgtg gtcgataccc gctcggtccg gcacccagtt atccggatcg gggcctagca
     1201 ggcgcagcgc ttcgagcgcg ttggcatcgg gattggaggt ggttgtcatt gcgcgggttc
     1261 aatcaggaaa ttggagggat gatcgagata ttgaaaaggg atacgcgcgc tggcaaccaa
     1321 gcaattcacc tttgcttaga cgctttttat ggaacccaat ggctatagcc agccctgcac
     1381 cttatttcga cgaatactcc cgatgccagg caagcaattg ctttgaggga ggcatgtgcc
     1441 acttgttgcc ttcatcgatg agaaaaccac tccgatgcca ctccttcacg atcttgtcga
     1501 gcgccgccac ggtgtctgtc tcgcccttgc gcacccagat caccgacggt gacggaatca
     1561 gttggtcagc gatcggtgac tcatagtcct gccactcgcc cgaggtaccg gtgagccggg
     1621 cctgaacgcc cggcgtcaca tgaaccgacg ccacgcaagt cccgccgcgc aaagcaagca
     1681 gcgcttcggg catgcctttg aagcccttga cctgtgcacc gtattgttca atcagcgggc
     1741 gcgtgtagtt gctgccttgc gaaacgcaaa caggcttgcc gcgcagatcg ttccagttat
     1801 ggatacccgc ccctttgtgc accatggccg agccaccgat ctcctcgaac ggcgtgggca
     1861 cataactcag tatttcgtcg cgctctttcg tgtactgcat gctcgcgatc agcgcgtcga
     1921 ccttgccctg ctgaaggaat tgcacgcgat tcggaggcgt gacttcgacc gcttcaaatt
     1981 tcacgccgag gcgtctggcg aggtcttgcg caagttcgac gttgtagccg acgggcttgc
     2041 gagtctgcgg gtcgagtgag ccgtaggtac cgtcgagcac gaccccaacg gtgagcgtac
     2101 cgcgtgactt gatccggtcg agggtggcat cggcgtgaac ggtttgcgaa agtgcaagcg
     2161 cggacaaggt aaagcttaag aaggcggcga agcgaaatct cattggctgg cactttctgt
     2221 ggcgggtgca tcgatacgga aaacagcgag ttcgtcaggc gcgcactgcg cgatcagacc
     2281 ggtctcccag tcgagatact gacgagcggc gtcaaggttg ccatcgtggc gatcgtggac
     2341 aaagaacagg tagtcgatac gtgcttcatc ggccggaaga tcgggtgtcg atgccagcgg
     2401 caagcccgct tttttccagg tatcgattcc attgtcggcg agaaaaagcg aagtgaagcc
     2461 caactcgcgg agatcggctg ctgcaatgtc tgctaccgca ggttcgtccg cgaataacag
     2521 cagcgtgtcg cccggtgtcg ccttaagcgc aacgagcgtt ttcgcaagtt gcggacgaat
     2581 cgaccagtgc gcaccagcag catgttcccg ccggtaggcc gcactcgatc gcagatcgag
     2641 cagcaaaaca tcgcccgttg cggcttcacg caacgcggcc gtgtcgagta acggcaagga
     2701 cgattgcacc ggtgtagttc gcttgccaac gtgcagcgca gttgcttcgg ccgcatcgat
     2761 caacgcggcc tcaaagccta actgcacgag ccatgtagca attacgggtg cgcgcacgcc
     2821 gtcatagtca accagcaaca cgcgggcacg ccgcacgcca atggtctggt cagtcgcctg
     2881 caccagttgc ccgcccggcg cgtggatggc gctcggcaga ccgtcgcgcg cgaactcttc
     2941 cggcgtacgg acatcgatca ggaaggtcgt ccggtgcgga tcagcaagcc attcttgcgc
     3001 ggtcgaagca tcgagcgttg caacgtggaa gcgcgcagca agcttagccg cgcgagtctg
     3061 cgcatcagca accgctgctt cgttcaaacc ctccggatag cggcgctggc taccatgttc
     3121 gagcttgagc ccggcaagcg cccaaccttg cgtgccattc tccagcgcga tcaccggatt
     3181 cggcacgcca aggttgcgca aagtctgcgc accgataatg ctgcgcgtgc gcccggcaca
     3241 atgaatcacg atcggcgtgg cagggtcggc tacaagcgtt ccgatccggt acgccagctc
     3301 gccgttcggc acgggaatcg cgcctgggat ggtcatcttc cgatgttcat cgagcgtacg
     3361 tccgtcgaac aacgcatgag ctcgtccttc atcgatcaga accgccagct cttcgggcga
     3421 cagatgcggt gttccatacg catgttcgat gagttcgcca aaggtcttcg atggcagatt
     3481 aacgccctta aacagcgtat aaccggccgc ctgccagccg cgggcgccgt cgcgcaggat
     3541 cgatacgtcc gcgtagccga gcgcgcccag acggcgtgct gcgagtaccg cgataccctc
     3601 gccgtcatca agcacgacga tccgcgtgtc gggtctcggc accagtcgcg gcgcatctat
     3661 ttccagccgg ctatagggca acgggatcgc gaagaacgga tgcccttcac cgaactgccc
     3721 ggcttcgcgg acatcgagca aggcgatttc ggcttcgtcg ttgagccatg cgcggacaat
     3781 ggatgcatcg acgaaagccg cgtcgtttcg aattgaggtc atgggagaaa ggccggaatg
     3841 agagatggac agcgttcagg acagcacgct gcgaaaggct tgtgcaaggt cgaggatcag
     3901 atcgtccgca tcctccagcc caatgtgcaa ccggatcacg gcttcctgcc cctgccaata
     3961 gctatgggaa cgcaaacgcc gtggcggtgc gatcagcgca aggctttcat aaccgcccca
     4021 tgaggcgcca atgccgaata gctgcaacgc atcgataaaa gcagcagcct ggctggtatc
     4081 ggcgtcacgc aaggcgaacg agaca
//
LOCUS       DATGBK010001138         2885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_222239, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001138 DATGBK010000000
VERSION     DATGBK010001138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222239"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..863
                     /locus_tag="VKJ77_15890"
     CDS             <1..863
                     /locus_tag="VKJ77_15890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46801.1"
                     /translation="NLVVEEGEFFGLLGPNGAGKTTLISILAGLARADSGAISVLGHD
                     VVTDFRQARRALGVVPQELVFDPFFTVRESLRIQSGYFGLRKNDDWIDEIMANLDLTE
                     KADVNTRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFISRLNREG
                     HTIVLTTHYLEEAEALCDRLAMLRRGEVVALERTSTLLQRFAGMQLSLRFSQGVLPAE
                     LRMLEVDPRATSGTNHLLRLASYDEVEPILAKCRAAGCTFDEIDVRKADLEDVFVQVM
                     NEPEVIEGLS"
     gene            860..1615
                     /locus_tag="VKJ77_15895"
     CDS             860..1615
                     /locus_tag="VKJ77_15895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46802.1"
                     /translation="MSGFRTLFYKELLRFYKVGFQTVLAPVITALLYLMIFGHALTNH
                     VEVYPGVAYTSFLVPGLVMMSVLQNAFANSSSSLIQSKITGNLVFVLLPPLSHWEMYF
                     AYVLASVVRGIAVGFGVFIVTVWFIPMSFAAPFYILGFAILGSAILGTLGLIAGVWAD
                     KFDQLAAFQNFLIMPLTFLSGVFYSTHTLPPIWREVSRLNPFFYMIDGFRYGFFGMSD
                     VNPLASLGIVGGFFIVLAGIAIRLLASGYKLRH"
     gene            1707..1946
                     /locus_tag="VKJ77_15900"
     CDS             1707..1946
                     /locus_tag="VKJ77_15900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020747334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990229 - iron-sulfur cluster assembly
                     complex [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HMC46803.1"
                     /translation="MLPTPEQVKEYIAGGLACQHVEVEGDGQHFFATIVSDAFEGKRP
                     IARHQLVYAALGDRMRAEIHALSMKTLTPAEWKPV"
     gene            2077..>2885
                     /locus_tag="VKJ77_15905"
     CDS             2077..>2885
                     /locus_tag="VKJ77_15905"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HMC46804.1"
                     /translation="MDKLVIVGGAKLSGEIVVSGAKNAALPILCASLLTADDVHLENV
                     PNLQDVRTMLKLLNQMGVRSESADGKVWLNASKVDNLVAPYEMVKTMRASILVLGPLL
                     ARFGEAKVSLPGGCAIGARPVDQHIKGLQVMGAEITIEHGFIEARAKRLKGARIVTDM
                     ITVTGTENLLMAAVLAEGETVIENAAREPEVSDLANLLVAMGAKIDGIGSDRLVIQGV
                     DKLHGARHSVVPDRIEAGTFLCAVAATGGDVTLRNVNPSLLEAVIEKLHEAG"
BASE COUNT          559 a          824 c          868 g          634 t
ORIGIN      
        1 tgaacctcgt cgtagaagaa ggcgagtttt tcggcctgct cggccccaac ggcgccggta
       61 aaacgaccct catcagcatc ctcgcgggcc tcgctcgcgc cgatagcgga gcgatctccg
      121 tgctcggcca tgacgtggtc accgacttcc gccaggcgcg ccgcgcgctg ggcgtggtgc
      181 cgcaggaact cgtcttcgat ccgtttttca ccgtccgcga gtcactgcgc atccagtccg
      241 gctatttcgg cctgcgcaaa aacgacgact ggattgacga aatcatggct aatctcgatc
      301 tcaccgagaa agccgacgtc aacacgcgcg cactctctgg cggcatgaaa cgtcgtgtgc
      361 tggtcgccca ggctctggtc cacaagccgc cggtgatcgt gctcgacgag ccaaccgcag
      421 gcgtcgatgt cgaattgcgc cagacgctct ggaaattcat ttcccggttg aatcgcgaag
      481 gccacaccat tgtcctgacc acgcactatc ttgaagaggc cgaggcgttg tgcgaccggc
      541 tggccatgtt gcgtcgtggt gaagttgtcg cgcttgaacg aaccagcacg ctgttgcagc
      601 gcttcgccgg aatgcagctt tcgttgcgtt tttcgcaggg cgtattgccc gccgagttgc
      661 gtatgctgga agtcgatccg cgtgcaacct ccgggaccaa tcatttgttg cggctcgcaa
      721 gctatgacga agttgagccg atcctggcga aatgccgtgc agcgggctgc acgttcgatg
      781 aaatcgatgt gcgcaaagcc gatctggagg atgtgttcgt gcaggtgatg aacgagccgg
      841 aagttatcga gggcctttca tgagcggctt tcgtaccctg ttctacaagg aactcctgcg
      901 cttctacaaa gttgggtttc aaacggtgct cgcgccggtc atcacggcgc ttttgtacct
      961 gatgatcttc gggcacgcgc tcacgaatca cgtcgaggtt tatccgggcg tggcctacac
     1021 aagctttctc gtgccgggcc tcgtgatgat gagcgtgttg cagaacgcgt tcgcgaacag
     1081 ttcgtcgtcg ctgatccagt cgaagatcac cggcaacctc gttttcgtcc tgctgccgcc
     1141 gctgtcgcac tgggaaatgt attttgcgta cgtgctcgcg tccgtcgtgc gcgggattgc
     1201 ggtcggtttt ggcgtgttta tcgtcacggt gtggttcatt cccatgagtt tcgccgcgcc
     1261 gttctacatt ctcggtttcg cgatcctcgg ttctgcaatt ctaggaacgc tcggattgat
     1321 cgccggcgtc tgggccgata aattcgacca gctcgcggcg ttccaaaact ttttgatcat
     1381 gccgctgact ttcctgtcgg gcgtgtttta ctccactcat acgctgccgc cgatctggcg
     1441 cgaagtgtcg cgactgaatc cgttcttcta catgatcgac ggtttccgat acggcttctt
     1501 cggcatgtcc gacgtcaatc cgctcgcgag ccttggcatt gtcggtgggt ttttcatcgt
     1561 gctggcggga atcgcgatcc gcttgctggc aagtggatac aaattgcgtc attaattgcg
     1621 ttgttggtta cgtctttgag cgcgtcacta actaacgtca ctaagtcacg tcactaagca
     1681 gttcacttaa ttttcaggag acttccatgt tgccgactcc ggaacaagtg aaggaataca
     1741 ttgctggcgg cctcgcttgc cagcatgtcg aagtagaagg cgacggccag catttcttcg
     1801 cgaccatcgt gagcgacgca ttcgaaggca agcggcccat cgctcgccat caactcgtct
     1861 acgcggcgct cggcgaccga atgcgcgcgg aaatccacgc gctgagcatg aaaacgctga
     1921 ccccggccga gtggaaaccc gtctgagcgt tcttcacatt tattgttaaa gcatcacccg
     1981 taaccgactg gctgaaattt agtgcgattc actcaagaca accgcgacgc caataatggc
     2041 gccgcagcag gaagctccgt agaaggaacg ccaagcatgg acaaactcgt gattgtcggg
     2101 ggcgcgaagc tctcgggcga aatcgtcgta tcgggtgcaa agaacgcggc gctgcccatt
     2161 ctttgcgcca gtctgctcac ggctgacgac gtgcatctgg aaaacgtgcc caacctgcaa
     2221 gacgtgcgca cgatgctcaa attgctcaac cagatgggcg tgcgttcgga atcggcggac
     2281 ggaaaggtct ggctgaacgc atcgaaagtc gacaacctcg tcgcgccgta tgaaatggtc
     2341 aagaccatgc gcgcgtcgat tctcgtgctc ggaccgctgc tcgcacgttt cggcgaagcg
     2401 aaggtgtcgt tgccgggtgg ctgcgcaatc ggcgcgcgtc cggtcgacca gcacatcaag
     2461 ggcctgcagg tgatgggcgc cgagatcacg atcgagcatg gcttcattga agcgcgggcg
     2521 aagcggctga aaggcgcgcg cattgtcacc gacatgatca ccgtcaccgg cacggaaaac
     2581 ctgttgatgg cggcggtgct ggcggaaggc gaaacggtta tcgaaaacgc ggcgcgcgag
     2641 ccggaagtca gcgatctcgc gaatctgctc gtcgcgatgg gcgcaaagat cgatgggatc
     2701 gggtcggaca ggctggtgat ccagggtgtc gacaagttgc acggcgcccg tcattcggtg
     2761 gtgccggatc gcattgaagc gggcacattc ctgtgcgcgg tcgcggctac cggcggcgac
     2821 gtgacgttgc gcaacgtgaa tccttcgttg ctcgaagcag tgattgaaaa gctgcacgaa
     2881 gcggg
//
LOCUS       DATGBK010001139         1745 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_268537, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001139 DATGBK010000000
VERSION     DATGBK010001139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268537"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1594
                     /locus_tag="VKJ77_15910"
     CDS             <1..1594
                     /locus_tag="VKJ77_15910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HMC46805.1"
                     /translation="IGLLTKPDKNSIEYKALEAAAAARGISQARLMLEVGGIPSARAL
                     HEARFLSEFFPHGTGFAPVTVPPLPDDLPEADVQAFSIDDVTTTEIDDAFSVEHLADG
                     RVRVGIHIAAPALGIARGDMIDAIARTRLSTVYMPGDKITMLPDSVVEAFTLAEGGLR
                     PALSLYIIVNRETQEIVATETRAERVFVKSNLRHNHLDEHVTEESLAAGSGEYPHKDD
                     IAVLWPLAQALFEKRQEARAGYGLRREVQRNNDFNFYVEGEHITITPRRRGSPLDLIV
                     AELAILANSSWGAFLNDHSVPGIYRSQRGFGAPGPKRTRMQTTPAPHEGLGVAQYAWS
                     TSPLRRYVDLVNQWQLLACVRHGVTAALVAPFKPKDADLFAVVQGFDDQYSAYADYQR
                     RMEYFWCLRWLKQEGKKHVAASVVKDDLVRLDEIPLMLHVPGLGVHARGTKVMLDVMS
                     LDELTVEASCRLLHVIDAPAPASAQEAEAQQDEAEEELIEAEDLSAESEAEAQAEAAP
                     EGESATDEPAGESTPDTTEPTR"
     gene            1591..>1745
                     /gene="aroE"
                     /locus_tag="VKJ77_15915"
     CDS             1591..>1745
                     /gene="aroE"
                     /locus_tag="VKJ77_15915"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922761.1"
                     /note="AroE; catalyzes the conversion of shikimate to
                     3-dehydroshikimate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HMC46806.1"
                     /translation="MTSGVVTRDHYAVIGNPVAHSKSPWIHARFAEQTGEAIEYGRVL
                     GTIGAFAG"
BASE COUNT          333 a          500 c          593 g          319 t
ORIGIN      
        1 gatcggcttg ctgacgaagc cggacaagaa ctctattgaa tataaggcgc tcgaagcggc
       61 tgctgccgct cgcggaattt cgcaagcgcg gctgatgctg gaagtgggtg gcattccttc
      121 ggcgcgtgcg ctgcacgaag cccgtttcct gtcggaattt ttcccgcacg ggacgggctt
      181 cgcgcccgtc acggtgccgc cattgcccga cgatctgccg gaagcggatg tgcaggcgtt
      241 ttctatcgat gacgtcacca ccactgaaat cgacgacgca ttctccgtcg agcatctcgc
      301 cgatggccgt gtgcgtgttg gtattcacat cgcggcgccg gcgctgggga tcgcgcgcgg
      361 cgacatgatc gatgcaatcg cgcgcacgcg cttgtctacc gtctacatgc ccggcgacaa
      421 gatcacgatg ctgcccgaca gcgtcgttga agcgttcacg ctggccgaag gcggattgcg
      481 gccggcgttg tcgctgtaca tcatcgtgaa tcgggaaacg caggaaatcg tcgcgaccga
      541 aacacgcgcc gagcgtgtgt tcgtgaagag caatcttcga cacaaccatc tggatgaaca
      601 cgtcaccgag gaatcgctcg cggcgggtag cggcgagtat ccgcacaagg acgatatcgc
      661 ggtgctgtgg ccgctcgcgc aggcgctgtt cgaaaagcgt caggaagcgc gcgcgggata
      721 cggtctgcgg cgcgaagtgc agcgcaataa cgacttcaat ttctacgtgg aaggcgagca
      781 catcacgatc acgccgcgtc ggcgcggatc gccgctcgat ctgatcgtcg ccgagctggc
      841 gattctcgcg aattcatcgt ggggcgcgtt tctcaacgat cacagcgtgc cggggatcta
      901 ccggtcgcag cgcggatttg gcgcgccggg tccgaagcgc acgcgcatgc aaaccacgcc
      961 tgcgccgcac gaggggctgg gtgttgcgca atacgcttgg agcacgtcgc cgttgcgtcg
     1021 atacgtcgac ttggtcaacc aatggcaact gctcgcgtgc gtgcggcatg gcgtgacggc
     1081 tgcgctggtt gcgccgttca agccgaaaga cgccgatctg tttgccgtcg tgcagggctt
     1141 cgatgatcaa tattccgcgt acgccgacta tcaacggcgc atggagtact tctggtgctt
     1201 gcgatggttg aagcaggagg gcaagaagca cgtggcggcg tcggtagtga aggacgacct
     1261 cgtgcgcctg gatgaaatcc cgctgatgct gcatgtgccc ggccttggcg tgcacgcgcg
     1321 cgggacgaag gtgatgctcg acgtcatgag tctcgatgag ctcacggtcg aggcgtcgtg
     1381 ccgtttgctg catgtgatcg atgcacctgc tccggcgtca gcgcaagagg ccgaggcgca
     1441 gcaggacgag gcggaagaag agttgatcga agcggaagat ttgagcgccg agagcgaagc
     1501 cgaagcgcag gcggaagcgg cgccggaagg cgaatctgca acggatgaac cggctggcga
     1561 aagcacgccg gacacgacgg agcccacgcg atgacttcgg gcgtagtcac tcgggaccac
     1621 tatgccgtga tcggcaatcc ggttgcgcat agcaaatcgc cgtggattca cgcgcgtttt
     1681 gctgagcaga ctggtgaggc gatcgagtac gggcgcgtgc tcgggacaat cggcgcgttc
     1741 gccgg
//
LOCUS       DATGBK010001140         3938 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_337367, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001140 DATGBK010000000
VERSION     DATGBK010001140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3938
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337367"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /locus_tag="VKJ77_15920"
     CDS             <1..632
                     /locus_tag="VKJ77_15920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC46807.1"
                     /translation="EGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSS
                     AAKDIKDLISSSVQKIQTGSGLASEAGRTMSEVTNAVARVNDIMEEIAAASGEQSRGI
                     EQVNTAITQMDEVTQQNAALVEQATAASQSLEDQGRKLTQAVSSFRLGTEHSTGYATP
                     VTSAKALARTQVKPHPVPQETIAKGVRVLRASAKPATSGSKSNAEWEAF"
     gene            complement(734..1657)
                     /locus_tag="VKJ77_15925"
     CDS             complement(734..1657)
                     /locus_tag="VKJ77_15925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007589282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46808.1"
                     /translation="MQNRLEMLRIYCAAVEAQSFKEAATRLGTSPQAITRAVQEAEAL
                     VGEILFHRNTRRVRATEAGEAFAQRARKLVQQMDDLLRPKDSEIDAEIAGLVRLTTPK
                     SIGERFLMPALVRLAEKHPRITLDLRLSDAISDPIAEQIDIGVRIGFMRDSRFVVRPA
                     SHVGFSVIASPKLIARVGRPADLAELALLPSTGFIDRNTGRVWPWQFSNGQQMTPTNL
                     AFQTDDGECECRAVVAGLGFGQIVSYLALPLLRAGKVISVLDDIAPEPWPVYVYRPQR
                     GPVPARIRLVFDAVLAALEKSELQHGPYVSG"
     gene            1794..2549
                     /locus_tag="VKJ77_15930"
     CDS             1794..2549
                     /locus_tag="VKJ77_15930"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007589284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC46809.1"
                     /translation="MVNNVSNGIEGKVVVITGASSGIGESTARHLSAKGASLVLGARR
                     LDRLESIAAELREAGGKVEVLAADVTRRADVQALVDQAVSTYGRVDVVINNAGFMAIA
                     PMSEMKVDEWERMIDINIKGVLYGIAAALPVFQKQESGHFINISSVAGIKVFSPGGTV
                     YSGTKFAVRAISEGLRHEVGASIRTTIILPGAVDSELKLGSSHTESAKVVGQFYQQAI
                     PADSVARAIAYAIEQPGDVDINEIVLRPTMQEF"
     gene            complement(2606..3871)
                     /locus_tag="VKJ77_15935"
     CDS             complement(2606..3871)
                     /locus_tag="VKJ77_15935"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC46810.1"
                     /translation="MRSTLPAEIDVAIVGGGIIGISTALALARKGIRVAVFEKGTVAG
                     EQSSRNWGWIRTVGRDPKELPLSAIANDMWAEIQARINVGYRRTGLAYLAETNKEMAR
                     HQAWLNSAKDTGTEGSLLGRDELARLIPTSNRPWIGALYSAGDGVAEPTLATAAIARL
                     ATEAGAMVFERCAVRGLETTAGRTSAVVTELGVVKCASVVLAGGAWSRLFCGNNAVDF
                     PQLKVHASVLRTGPLETGLEMAINGSDFTCRKRADGGYTVSQLGASIADLTPDSIRLC
                     RQFLPAWMAERKYLKLRVGRRFVEELRIPRHFRLDAPTPFEACRTLDPPPTMKMVDGA
                     LGKLKHAFPAFKNATVAQAWAGFIDVTPDAVPVISEVAKIPGFFLAAGFSGHGFGIGP
                     AAGALMADLVTGDTPRVEPKAFRLDRFNA"
BASE COUNT          818 a         1194 c         1178 g          748 t
ORIGIN      
        1 tcgaagggat cgcgttccag accaatatcc tcgcgctgaa tgcagcagtc gaagccgctc
       61 gcgccggcga acagggcagg ggatttgcag ttgtggcgag cgaagtgcgc agcctcgcgc
      121 aacgttcctc aagcgccgcg aaggacatca aggacctgat ctcgtcatcg gtgcagaaga
      181 tccagaccgg ttccgggctc gcaagcgaag cgggccgtac catgtcggaa gtcacgaacg
      241 cagtcgctcg cgtgaacgac atcatggaag agatcgctgc ggcatcgggc gagcaaagtc
      301 gcggcattga gcaagtcaat accgcgatca cgcaaatgga tgaagtgacg cagcaaaacg
      361 ccgcgctcgt cgagcaggcc acagcggcgt cgcaatcgct cgaagatcag gggcgcaaac
      421 tcactcaggc agtgtcgtcg ttccggctgg gcaccgaaca ttcaacggga tatgcaacgc
      481 cggttacaag cgcgaaagcc ctggcgagga cgcaagtcaa accgcatccg gtgcctcagg
      541 agacgatcgc gaagggcgtg cgcgtattgc gagcttcggc caagcccgcg accagcggca
      601 gcaagtcgaa tgcggagtgg gaggcgtttt aacgcggccg gcaaataagt tgtggcagcg
      661 gtgggcggtc tttcgtcgtg ccggatcgac cgcccgcttg catgctgttg agaggatatc
      721 ccggagcgtg aagtcagccc gacacataag gcccatgctg cagttcggat ttctccagtg
      781 ctgccaacac ggcgtcgaac acgagccgga tgcgtgcggg caccggccct cgctgcggcc
      841 tatagacgta gaccggccac ggctcaggcg caatgtcgtc cagtacgctt atcaccttgc
      901 ccgcgcgcag caagggcagc gcgagataac tcacgatctg cccaaacccc agtcccgcaa
      961 caacggcgcg gcactcgcac tctccatcgt cggtctggaa cgcaaggttt gtcggcgtca
     1021 tttgctgccc gttggaaaac tgccagggcc acactcgccc ggtgtttcta tcgatgaatc
     1081 ccgtcgacgg cagcagcgca agctcagcca ggtccgcggg acggcccacg cgtgctatca
     1141 gcttcggact ggcaatgacg gagaagccca cgtgcgatgc agggcgcacc acgaaacgac
     1201 tgtctcgcat gaagccgatg cgcacgccaa tgtcgatctg ctccgcgatg gggtcgctga
     1261 ttgcatcgga taaacgcagg tcgagcgtga tgcgaggatg cttctcggcg agacgcacaa
     1321 gcgcgggcat tagaaaacgt tcgccgatgg acttgggtgt ggtcaaccgg accaggccgg
     1381 caatctcggc atcgatctcg ctatccttcg gtcttaagag atcatccatc tgctgcacga
     1441 gtttgcgtgc gcgctgcgcg aatgcttctc ccgcttccgt ggcgcgcacg cgccgggtgt
     1501 tgcggtggaa gaggatttcg cctaccagcg cctccgcttc ctgaacggct cgcgtgattg
     1561 cctgaggcga ggtgcccagc cgggtagccg cttctttaaa gctctgtgct tcaacggccg
     1621 cacaatagat gcgtaacatt tcaaggcgat tctgcatgac ggatctcgtt ttgcttccat
     1681 aaaatggaat tatgaaatcg tatcatttcc attgaatggt tggcttgcga ttcccatact
     1741 gtcttctgtc gcgggggcct tcgccctctc aggaacacag gagcctgtca acaatggtta
     1801 ataacgtcag caatggaatc gaaggcaagg tcgttgtcat caccggcgcg agcagcggga
     1861 ttggtgaatc cactgcgcgt catttgtcag cgaaaggcgc gtcgcttgta ttgggtgcgc
     1921 gtcgtctgga ccggctcgag agcatcgccg ccgagttgcg cgaagcgggt ggcaaggtcg
     1981 aggtactggc cgccgatgtc acccgccgcg cagacgtgca ggcgctggtc gatcaggccg
     2041 tgagcaccta cggacgcgtg gatgtagtga tcaataacgc agggttcatg gcgatagcgc
     2101 cgatgtcgga gatgaaggtc gacgagtggg aacgcatgat cgacatcaac atcaagggag
     2161 tgctgtacgg aatcgccgcc gcgttaccgg tattccagaa gcaggagagc ggccacttca
     2221 tcaatatttc gtcggtggcg ggcatcaagg ttttcagccc cggcggcacc gtctacagcg
     2281 gcaccaagtt tgccgtacgc gcgatctccg aagggctgcg ccacgaagtc ggcgcttcga
     2341 tacgcacgac gatcatcctg ccgggcgcgg tcgactccga actgaagctc ggcagctcgc
     2401 atacagagag cgcgaaggtg gtgggtcagt tttatcagca ggcgatcccg gcggattcgg
     2461 tggctcgcgc gattgcgtac gcgatcgagc agccaggcga cgtcgatatc aacgagatcg
     2521 tgcttcgtcc gaccatgcag gaattctgat cgacgggctc cggcgatgcc aggtcgtacc
     2581 ggcaggttgc atatccgggc aagtcttagg cattaaacct gtccagccgg aacgcctttg
     2641 gctccactct tggcgtgtct ccggtcacca ggtccgccat caacgcgccc gctgcggggc
     2701 caatgccaaa accatgccct gaaaatcccg ctgccagaaa gaaccctgga atcttggcga
     2761 cttcagagat gaccggcacc gcatctggag tcacatcgat aaagccggcc caggcttgtg
     2821 caaccgtcgc attcttgaat gccgggaacg catgcttcag cttgcctaaa gcgccgtcga
     2881 ccatcttcat ggtcggcggc ggatcgagcg tccggcatgc ttcaaacggt gtgggggcat
     2941 ccaggcgaaa gtggcgcggg attcttaatt cctcaacaaa acgcctgcct acgcgaagct
     3001 tcagatactt gcgctccgcc atccacgccg gcaggaattg ccggcacaag cggatgctgt
     3061 ccggcgtaag gtctgcaatt gaggcgccaa gttgcgatac cgtataaccc ccgtcagcgc
     3121 gcttacggca cgtaaaatcc gacccattaa tcgccatctc caagccggtc tctaatggcc
     3181 cggttcgcag caccgacgca tgtactttca actgcggaaa atcaacggcg ttattgccgc
     3241 aaaaaagccg tgaccatgcg ccgcctgcca ataccaccga cgcacacttc acaacaccaa
     3301 gctcagtgac gactgccgat gttctccctg cggtggtttc caacccgcga accgcgcacc
     3361 gttcgaacac catcgcaccg gcttcggtcg ccagtctggc gattgcggcg gtagcgagcg
     3421 tgggttcagc aacgccatca ccggcgctgt acaaagcgcc gatccacggc cggttcgagg
     3481 tgggaataag acgtgccagt tcgtcgcgtc ccagcaggct tccttctgtg cccgtgtctt
     3541 tggccgagtt gagccacgcc tgatgacggg ccatctcctt gttcgtttcc gccagatagg
     3601 cgaggccggt gcgccggtaa cccacgttga tgcgcgcctg gatttctgcc cacatatcgt
     3661 tcgctatcgc agatagcggc aactccttgg gatcacgccc gactgttcga atccatcccc
     3721 agttgcgcga cgactgttca cccgcgaccg tgcccttttc gaatacagct acacgtatgc
     3781 ccttgcgcgc caacgcgagt gccgtgctga tgccaataat gccgcccccg acgatcgcaa
     3841 cgtcgatctc cgcaggcaat gtcgaacgca tgttatgtcc ttgaagaaaa gcggtcgttc
     3901 atgtcagtga gcacggcttc ggctagccga caagccca
//
LOCUS       DATGBK010001141         2918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_222321, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001141 DATGBK010000000
VERSION     DATGBK010001141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222321"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..1399
                     /locus_tag="VKJ77_15940"
     CDS             65..1399
                     /locus_tag="VKJ77_15940"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC46811.1"
                     /translation="MSTRSQVFSSDFTDTPYWWKDWRPHDDLMSEVPRDVDVAIVGAG
                     YAGLSCALEFAKHGLSVTVLEADVPGIGASTLSGGQVSGGVNVGKAPSGKKLDNAVSE
                     QRQQALLREAAASYGVFESILRDNAIECAYVKAGRINATWTDAHLAAWKKRIVNLNAY
                     ASAGARILSRDELRSELASDIYAGGVLLERAGQVHPSMMFAGLLAAARGAGVTVCSKA
                     PVKSVARSGAGYRVETARGTLASRHVVICTNGYTGESMPDLKRRVVPVVSHQIATEEL
                     PADLQASLIPKRRGISETRRVVNYYRYSPDGKRFLFGGRARFYHLDRRQSGAVLHAQM
                     VERFPQMADIKVAHSWGGTVALTLDFLPHLGRTADGIHYALGCNGSGVVMMTYLGYKV
                     ARLIIEGQAPGSSAYGTPMLTHPLYRGKPWFMPALGSYYQIRDVIDKRRQHA"
     gene            1473..>2918
                     /locus_tag="VKJ77_15945"
     CDS             1473..>2918
                     /locus_tag="VKJ77_15945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003807471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HMC46812.1"
                     /translation="MGLRIGVDIGGSFTDFAVLDEATRTIRTLKVFSRPDSPGSEVLA
                     GMEGLRERYGIEPREVVYFTHGTTVGVNAVVQRKGLKLGLVTTRNFEDVLDIARLKIP
                     DMYHLMSSRPAPLIPRDRVFGVVGRLTAEGDEETPVDETSVLDAVRGMQVAGCEGVVV
                     SLLHSYRNPSHEQQVKTIIQRKMPGMFVSCSHEVWPIIREYERTVTATIGGYVQPRVS
                     NYLTKLQAALAESGIGADLKVTKSNGGVMSAENGKQNCVQMILSGTASGVIGAAYLAK
                     LCKVKDCMSLDIGGTTADIALIVDGKPQYATGEYIGEFQIHIPSVSVSSIGDGGGSIA
                     WVDEFGVLKVGPESAGSNPGPVCYGRGGTRPTITDAFAAIGVLGSAALGYNAVKVDVD
                     ASLRAIEPLAQRLGLDVYKTAAAIIEVSISGMYAGVSRLSSRFGIDPRTFSLMPFGGA
                     GPMLGCFLARALNVRNLLVPTTPGVLSALGGL"
BASE COUNT          534 a          843 c          985 g          556 t
ORIGIN      
        1 aagccagagg tttccagtgt gtcgtagtcc tgttattaac cgctgtccca tcaaggacct
       61 caccgtgtcg actcgcagcc aagtgttttc ctccgatttc accgataccc cgtactggtg
      121 gaaagactgg cgtccgcacg acgacctgat gtccgaggtg ccgcgcgacg tcgacgtggc
      181 gatcgtcggc gcgggttatg cagggttgtc gtgtgcgctc gaattcgcga aacatggctt
      241 gagcgtgact gtgctcgaag ccgatgtgcc cggcatcggc gcgagcacgc tcagtggtgg
      301 acaggtatcg ggaggcgtga acgtgggcaa ggcgccctcg ggcaagaagc tcgacaacgc
      361 cgtatccgaa caacgtcagc aagcgctgct gcgtgaagcc gcggcttcct acggcgtgtt
      421 cgaaagcatc ctcagggaca acgcaatcga atgcgcttat gtgaaggccg gccgcatcaa
      481 cgcaacgtgg accgacgcgc acctggccgc gtggaagaag cgcatcgtga acctgaacgc
      541 gtacgcgtcg gcgggcgcac ggatcctctc gcgcgacgaa ctgcgcagcg aactggcgag
      601 cgacatttac gcgggcggcg tattgcttga gcgcgcggga caagtgcacc cgtcgatgat
      661 gttcgccggg ctgctcgccg ccgctcgcgg cgcgggtgtc acggtgtgca gcaaggcccc
      721 ggttaaaagc gttgcgcgct caggggcggg gtatcgcgta gagaccgcgc ggggaacact
      781 cgcgagccgg cacgtggtga tctgcactaa tggttatacg ggcgaatcga tgccggacct
      841 gaaacgccgc gtggtgccgg tcgtgtcgca tcagatcgcg actgaagagc ttcccgccga
      901 cttgcaggcg tctctgatac cgaagcgtcg cggtatctcg gagacgcgcc gcgtggtcaa
      961 ttactaccgc tattcgcccg acggcaagcg tttcctgttc ggcggccgcg cgcgctttta
     1021 tcacctcgac cggcgccagt cgggtgcggt cctgcacgcg caaatggtcg agcgctttcc
     1081 gcagatggcc gacataaagg ttgcccatag ctggggcggt acggtggcgc tcacacttga
     1141 cttcctgccg catctgggcc ggaccgccga tggtatccac tacgcgctcg gttgcaacgg
     1201 cagcggcgtg gtgatgatga cctacctcgg ctacaaggtc gcacgcctga ttattgaagg
     1261 gcaagcgccc gggagcagcg cttatggcac gccgatgctc acgcacccgc tttatcgcgg
     1321 caagccgtgg ttcatgccgg cgctggggag ctattaccag atccgcgacg tcatcgacaa
     1381 gcgcaggcag cacgcctgag cggcacgctc ttagcgggac ctcccatgat ggcagcagtg
     1441 cttcatcatt ttcgacaggc aaggacaacg caatgggttt gagaatcgga gtggatattg
     1501 gcggttcgtt caccgacttc gcggtgctcg atgaagcgac gcgaacaata cggaccttga
     1561 aggtgttttc gcggccggac agtccgggga gcgaagtgct tgcgggaatg gaaggcctgc
     1621 gggagcgcta cggcattgag ccgcgcgagg tggtttattt cacgcacggc acgaccgtcg
     1681 gcgtgaacgc ggtagtgcaa cgcaaggggt tgaagctcgg tctcgtgacc acgcgcaact
     1741 tcgaagacgt gctggacatt gcgcgattga agattcccga tatgtaccac ctgatgtcca
     1801 gccgtcccgc gccattgatt ccacgcgacc gggtgtttgg cgtggtgggt aggctgacgg
     1861 cggagggtga cgaagaaacc ccggtcgatg agaccagtgt gctcgacgcg gtgcgcggta
     1921 tgcaggtagc ggggtgcgag ggcgtggtgg tgtcattgct gcattcgtat cgcaacccgt
     1981 cgcatgagca gcaggtgaag acgatcatcc agcggaaaat gccgggtatg ttcgtctcgt
     2041 gctcgcatga agtctggcca atcatccgtg aatacgaacg caccgtcacg gcgaccattg
     2101 gcggttatgt acaaccgcgc gtatcgaatt acctcacgaa gttgcaggcg gcgctggcgg
     2161 aaagcgggat tggtgcggac ctcaaggtca ccaagtcgaa tggcggcgtg atgagcgccg
     2221 agaacggcaa gcagaactgc gtgcagatga tcctgtccgg caccgcgtcc ggcgtcatcg
     2281 gtgcggcgta tctcgcgaag ctctgcaagg tgaaggactg catgagtctc gacatcggcg
     2341 ggacgacggc ggatattgcg ttgatcgtgg acggcaagcc gcagtacgcg acgggcgaat
     2401 atatcggcga attccagatc catattccgt cggtctccgt gtcgtcgatc ggcgatggcg
     2461 gcggctcgat cgcctgggtc gacgagttcg gcgtgctcaa ggtcggaccg gaaagcgcgg
     2521 ggtcgaatcc gggcccggtt tgctacgggc gcggcggcac gcgaccgact atcaccgacg
     2581 cattcgccgc gatcggcgtg ctcggcagcg cggcgcttgg ctataacgcg gtaaaggtgg
     2641 atgtcgacgc gtcgctgcgt gcaatcgaac cgcttgcgca gcggctcgga ctcgatgtgt
     2701 acaagacggc tgctgcgatc atcgaggtat ctatctccgg catgtacgct ggcgtgagcc
     2761 gcttgagttc gcgcttcggc atcgacccgc gtaccttctc tctcatgcct ttcggcggcg
     2821 cgggaccgat gctcggctgt ttccttgccc gcgcgctgaa tgtgcggaac ctgctggtcc
     2881 cgactacgcc gggcgtgctg agcgcgcttg gcggtttg
//
LOCUS       DATGBK010001142         1970 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_244993, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001142 DATGBK010000000
VERSION     DATGBK010001142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244993"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VKJ77_15950"
     CDS             complement(<1..584)
                     /locus_tag="VKJ77_15950"
                     /inference="COORDINATES: protein motif:HMM:NF012674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body protein"
                     /protein_id="HMC46813.1"
                     /translation="MSFFGLNIAGNALSAYQDAVNVTSDNIGNVNTPGASRQNAVLTE
                     APAISGSSAYPAHIGSPGTRGEGVVVNQIQRIHQDSFDALFRGATSSQNFFTTQQQQL
                     TTLQAAFGEPNNGVNTAFTGLQTAALNLASQPTSTPARASVIQSAQAFVAALNQSGNA
                     VALAKGTTLSQAATVVTKANTLIDQIAALNGQIRA"
     gene            complement(581..1063)
                     /locus_tag="VKJ77_15955"
     CDS             complement(581..1063)
                     /locus_tag="VKJ77_15955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46814.1"
                     /translation="MSTDSWQTFADAISEENRYLAELGSAALALTDSLVCGTPADIET
                     TERKVEAMRVLHGHAHGKRMTMQKRGFGDLTLQQVCAYAPAPLRRNVYTTLHELTTRA
                     IALQITVNNNKALIMAGMNRLTRTVEVLQRSMTEQPGTYKRRGTVPVAGGSVIMSRRA
                     "
     gene            complement(1086..1295)
                     /locus_tag="VKJ77_15960"
     CDS             complement(1086..1295)
                     /locus_tag="VKJ77_15960"
                     /inference="COORDINATES: protein motif:HMM:NF016223.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HMC46815.1"
                     /translation="MSNATDRTELCEGSTALASFFSEVMAEPFYRTSLVNELQHRISE
                     GKYYVPTDQIVEKMIGRMVVEALPV"
     gene            complement(1467..1820)
                     /locus_tag="VKJ77_15965"
     CDS             complement(1467..1820)
                     /locus_tag="VKJ77_15965"
                     /inference="COORDINATES: protein motif:HMM:NF021638.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod-binding protein"
                     /protein_id="HMC46816.1"
                     /translation="MEIDPTKAAAAAAKPELTGEQKEALKRLHVAAQQFEAVFVNMLF
                     KSMKAAAPTTSLTGKVSNAEKTFSDMLDEKRSENVASTGAFGIGKILEDQLKAQVLAN
                     PSQSAKARLPREGDL"
BASE COUNT          359 a          571 c          601 g          439 t
ORIGIN      
        1 gcacgaattt gaccgttgag cgcggcgatc tgatcgatca gcgtatttgc cttggtgaca
       61 accgtcgccg cttgcgaaag cgtcgttccc ttggccagcg cgaccgcatt gccggactga
      121 ttgagcgcgg caacaaaggc ctgagccgac tgaatcacgc tggcgcgggc cggcgtcgac
      181 gtcggttgcg aggcgaggtt cagcgcagcg gtttgcaggc cggtgaacgc cgtattcacg
      241 ccgttattcg gctcaccgaa cgccgcttgg agcgtggtga gttgctgctg ctgcgtcgtg
      301 aagaaattct gcgatgaggt ggcgccgcga aacagcgcgt caaagctatc ctggtggatg
      361 cgttggatct gattgacgac gacgccctcg ccgcgcgtgc cgggcgaacc gatgtgtgcc
      421 ggataggcag acgaaccgga aatggccgga gcctcggtga gaaccgcatt ttgacgcgac
      481 gcgccggggg tgttgacgtt gccgatatta tccgaggtaa cgttgaccgc atcctgatat
      541 gcagacagcg cgttaccggc aatgtttaag ccgaagaaac tcatgcgcgg cgactcatga
      601 tgacgctgcc gccggcgacg ggaaccgtgc cgcggcgctt gtaggttcca ggctgctcgg
      661 tcatcgaccg ttgcagcact tcaacggttc gcgtcaagcg attcataccg gccatgatga
      721 gtgccttatt gttgttgacg gtgatttgca gggcgatcgc gcgcgtcgtc agttcgtgca
      781 atgtcgtgta aacgttacgg cgcagcggag cgggcgcata cgcgcacact tgctgcaaag
      841 ttaaatcacc gaaaccgcgc ttttgcatcg tcatccgctt gccatgcgca tgtccgtgca
      901 gcacgcgcat cgcttcgact ttgcgctcgg tcgtttcgat gtcggccggc gttccgcaga
      961 ccagcgaatc cgtcagcgca agcgcggcgg aacccagttc tgcaaggtac cgattttctt
     1021 cggagatcgc gtcggcgaag gtctgccagg agtcggtgct catgcccgcc ctccggccga
     1081 aagaattaga ccggcagcgc ctcgacgacc atccgcccga tcattttctc cacgatctgg
     1141 tcggttggta cgtagtactt gccctcggag atccgatgct gcaattcgtt gaccaagctc
     1201 gtgcgataga acggctccgc catgacttcc gaaaagaagc tcgcaagagc cgtgctgccc
     1261 tcgcaaagct ccgtccgatc cgtagcgttc gacaccgctc caacgcgcgt tttgcgcttg
     1321 ggggctgttc gataggcggc gaccgcggat tcgatctctg cccggctgat tatcattgcg
     1381 agcggacctt tccggtgctg cttccctgtt agagatagca tcggaatgag caccgagtga
     1441 ctttaggccg gtaggcatga cgcgcatcat agatctccct cgcgcggtag ccgcgccttc
     1501 gcagattgtg agggattcgc cagaacttgc gccttgagct gatcttcgag aatttttccg
     1561 atgccgaacg caccggtcga ggccacattt tccgagcgtt tttcgtccaa catgtcgctg
     1621 aacgtcttct cagcattcga gactttgccg gtaagcgatg tcgtcggcgc ggccgctttc
     1681 atcgacttga acagcatgtt gacgaagaca gcctcgaact gctgcgcggc aacatgaaga
     1741 cgctttaatg cttctttctg ttcgccggtc agttcgggct tggcggctgc tgccgcggcc
     1801 ttcgtcggat cgatttccat ttagattatc tcgatgtccg cttggagtgc gcctgattcg
     1861 cgcagtgctt gcacgatcga gataaggtcg cgcggcgaca cgccgatcgt attgagcgcg
     1921 cgcgtcactt gcgaaagcgt tgcagctccg ctgatgtaga tcagcttgcg
//
LOCUS       DATGBK010001143         2144 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_291646, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001143 DATGBK010000000
VERSION     DATGBK010001143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291646"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..672
                     /locus_tag="VKJ77_15970"
     CDS             <1..672
                     /locus_tag="VKJ77_15970"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HMC46817.1"
                     /translation="LVFLTALGVSLLAIVITVSYLRERRLHRGTRHLANQLQSANALL
                     SAEARHDALTGALSRRYFLDTLRREVDLARSGGVPLSVAIADLDHFKQVNDRFGHATG
                     DRALEHFVRMCEQQLRASDGVGRLGGEEFGLLLPHTARADAHTVLERLRKRFNQEHCA
                     YLPDDTMLSVSIGITELSDGDTAENLLKRADLALYAAKSGGRDRSEVRPADTRPPMPR
                     HPETA"
     gene            790..1053
                     /locus_tag="VKJ77_15975"
     CDS             790..1053
                     /locus_tag="VKJ77_15975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46818.1"
                     /translation="MKGNLVIVCRDQDAEAFDHLLAEYGAFQTRLSSTAWYLRLDVAP
                     EVIQEEILARFGKYTTHYIFEAATVTYNTVDSEAASALNTLFD"
     gene            complement(1178..>2144)
                     /locus_tag="VKJ77_15980"
     CDS             complement(1178..>2144)
                     /locus_tag="VKJ77_15980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC46819.1"
                     /translation="KDANWIVVPVQPLRPPRSRDRMLLWLAIIFSTAVMAALFAAWQL
                     QTPLRSLAQAVGRFGRGEPTPPVPERGPRELRQLTHGFNQMVREVEQTESDRAVMLAG
                     VAHDLKTPLARLRLRAEMMDEVKVRDGVVRDVESMAHIVDQFLVFAHDGADRSEPAEV
                     DQQCERIARSYRAVTVGAPSVQTRLTAGRDFALPAATLDRLLSNLLDNAHAYGAPPIV
                     IETLRGTNGWILRVMDSGSGIAAHDLVKASRPFVRLDPARGGSGHSGLGLAIVERLVR
                     RGGGECEIGNRPEGGLQVVMTFPFDVVARSAEMLHGDVMHEARVM"
BASE COUNT          408 a          705 c          648 g          383 t
ORIGIN      
        1 ctggttttcc tgacggcgct cggcgtgagc ctgctcgcca ttgtgatcac cgtgtcatac
       61 ctgcgcgagc ggcgcttgca ccggggcacg cgccatctgg ccaaccagtt gcagtcggct
      121 aatgcgctgt tgtccgccga agcccggcac gacgcgttga ccggggcgct gtcacgacgt
      181 tatttcctcg ataccttgcg tcgcgaagtc gatctggccc gctcgggggg cgtgccgctg
      241 tctgtggcaa tcgccgacct tgaccacttc aagcaggtga acgaccgctt cggccacgca
      301 accggcgacc gcgcgctcga acatttcgtg cggatgtgcg agcagcaact gcgcgcgagc
      361 gacggtgtcg ggcggttggg cggtgaggaa tttggtttgc tgctgccgca tacagcgcgc
      421 gccgatgccc acacggttct cgaacgcctg cgcaagcgct tcaaccagga gcattgcgcc
      481 tacctccccg acgacaccat gctgagcgtg agcattggca tcacggaact gagcgacggc
      541 gacaccgctg aaaacctgct caagcgcgcg gatctggcgt tgtatgcagc gaaatcggga
      601 gggcgcgacc gtagtgaagt gcgcccggcc gacacccggc cacccatgcc gcggcatcct
      661 gaaacagcct gacgcgaagt taaaacggca attagcgaga cgttggccga aaggcgtggt
      721 gcggcagcgg cacgacagca ggtattatcg accttcgagt tcgatatctg ccgttatcag
      781 gaggggtgca tgaagggaaa tctggtcatt gtctgccgag atcaggacgc tgaagcattc
      841 gatcacttgc tggccgagta tggtgcgttc cagacgcggc tctcttcgac tgcctggtat
      901 ttgcgtctcg atgtcgcgcc tgaagtgatc caggaggaaa tcctggcgcg gttcggcaaa
      961 tacaccacgc actatatttt cgaggccgcg accgtgacgt acaacacggt cgacagcgaa
     1021 gcggcttccg cactcaatac gttgttcgac tagcggtttc gcttgggcgc caggcttggg
     1081 ttcgctggcg ctgcggggtt ctggaggtgg gttttggcca cgtcctcgaa cccctgccgc
     1141 ccgaggacgc caagcccggg gttggccgat cacaccgtca catcacgcgc gcttcgtgca
     1201 tcacgtcgcc atgcaacatc tcggccgaac gtgccacgac gtcaaaagga aaggtcatca
     1261 cgacctgcag gccgccttcg gggcgattgc caatttcaca ttcaccgccc ccccgccgca
     1321 ccagccgctc aacaatggct aagcccagcc cgctgtggcc actgccgccg cgcgccggat
     1381 cgagcctgac gaacggccgg ctcgccttca ccagatcatg tgccgcgatc ccactaccgc
     1441 tgtccatgac acgcaaaatc cagccgttcg tcccgcgcaa cgtttcgatc acgatcggcg
     1501 gtgcgccgta cgcgtgggcg ttatcgagca ggttcgacaa caagcggtca agcgttgcag
     1561 cgggcaacgc gaaatcccgc cccgcggtga gccgggtctg aacagacggc gctcctacgg
     1621 taaccgcgcg ataactgcgc gcaatgcgct cgcactgctg atcaacttcg gctggctcgc
     1681 tacgatcggc gccatcgtgt gcgaacacca ggaactggtc gacgatatgc gccatggatt
     1741 ccacgtcgcg caccacgcca tcccgcactt tcacttcatc catcatttca gcacgcaggc
     1801 gcaaacgcgc aagcggcgtc ttcagatcat gggcgacgcc cgccagcatg accgctcgat
     1861 cgctttccgt ctgctccact tcgcgcacca tctggttgaa cccgtgggtc aactgccgca
     1921 gctcgcgagg accacgttcc ggtaccggcg gagtaggttc accccggccg aagcgtccga
     1981 ccgcctgcgc cagcgaacgc aacggcgtct gtaattgcca cgcggcaaac agcgcagcca
     2041 tcacggcggt agagaaaatg atcgcgagcc agagcagcat acggtcgcgc gaacgcggcg
     2101 gacgcaaggg ctgcaccggc acgacaatcc agttggcgtc cttc
//
LOCUS       DATGBK010001144         1940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_37476, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001144 DATGBK010000000
VERSION     DATGBK010001144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37476"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..440
                     /locus_tag="VKJ77_15985"
     CDS             <1..440
                     /locus_tag="VKJ77_15985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013696778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC46820.1"
                     /translation="DTNCKGLVTVTHALLPGMVERNRGHVFNLSSIAASYPYPGGNVY
                     GATKAFVRQFSLNLRADLTGTALRVTDIEPGLCGGTEFSNVRFKGDDTKAASVYKDVQ
                     PLTAEDIADSIYWIATRPAHVNINTIELMPVAQSFGSLTVHRG"
     gene            552..1067
                     /gene="ybgC"
                     /locus_tag="VKJ77_15990"
     CDS             552..1067
                     /gene="ybgC"
                     /locus_tag="VKJ77_15990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HMC46821.1"
                     /translation="MSTSEPQKANGLLTFDWPLRVYYEDTDAGGIVFYANYLKFFERA
                     RTEWLRACGIDQRVLAESDGVLFVVKRTALEYSAPARLDDVIHVVSRIERIGRASVDF
                     HQEAWRDGTLLASGDIKVASVSLGAIRPVGIPASVLDGLRRGPQQPVPGNASTMPMPA
                     PFKSSCSEKPM"
     gene            1260..1937
                     /gene="tolQ"
                     /locus_tag="VKJ77_15995"
     CDS             1260..1937
                     /gene="tolQ"
                     /locus_tag="VKJ77_15995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HMC46822.1"
                     /translation="MNTTQDLSIISLVIHASLLAQAVMALLLLLSLLSWTYIIRKWFA
                     IRRARNQTERFERDFWSGGDLQALYQSAANNRHTIGALERIFESGMREFLKGKERRMN
                     DPAAILDGSRRAMRAAFQREMDVLEVNLAFLASVGSVSPYIGLFGTVWGIMNSFRGLA
                     NVQQATLANVAPGIAEALVATAIGLFAAIPAVVAYNRYAHDIDRLAIRFETFIEEFSN
                     ILQRQAH"
BASE COUNT          386 a          582 c          573 g          399 t
ORIGIN      
        1 tcgacacgaa ctgcaagggc ctcgtcacgg tcacgcacgc gttattgcct ggcatggtcg
       61 aacgcaatcg cgggcacgtg ttcaatctaa gctcgatcgc agcgtcctac ccctatccgg
      121 gcggcaacgt gtacggcgcg actaaagcgt tcgtgcgcca gttcagcctg aatttgcggg
      181 cagacctgac cggcacggcg ttgcgcgtaa ccgacatcga acccgggttg tgtggcggca
      241 cggaattctc caacgtccga ttcaagggcg acgacacgaa agccgccagc gtctataagg
      301 acgtgcaacc gctgacggcc gaggacattg ccgattccat ttactggatc gccacgcgac
      361 cggcgcacgt gaatatcaac acgatcgagt tgatgccggt cgcgcagtcg ttcggctcgc
      421 tgaccgtgca tcgcggctga tccgaacgaa gtgaatacgc caggcgttca cctgatagtt
      481 gccggaaagc agcggccggc agcacgtttg tacggtcgct ttgcagcttc cggtaaaatg
      541 cgcggatgaa catgtccacc agcgagcctc agaaggcgaa cggcctcttg accttcgatt
      601 ggccgcttcg ggtctattac gaagacaccg acgccggcgg catcgtcttc tacgcgaact
      661 acctgaagtt tttcgaacgg gcacgcactg aatggttacg ggcgtgcggc atcgaccagc
      721 gtgtgctggc cgagtcggac ggcgtattgt tcgtcgtcaa gcgcacggcg ctggaatact
      781 cggcgcccgc gcgcctcgac gatgtcattc atgtggtaag ccggatcgag cgtattggcc
      841 gagcgtcggt cgatttccat caggaagcgt ggcgggacgg caccttgctg gcttcaggcg
      901 acatcaaggt ggcctcggtc agtctcggcg ccatccgccc ggtcgggatt cccgcatcgg
      961 tgctcgacgg attacgccgc ggaccgcagc aacctgtgcc aggcaatgcg tcaaccatgc
     1021 cgatgccagc accgtttaaa tcatcttgtt cagaaaaacc catgtagaca aagacccttt
     1081 gactccatca agacctgaac cgaactgaat cgagcctgcg tgccatcggg catgcaggca
     1141 cagaagtacc gagcatgtgc tcccaggacc ggtctacgct ttcagtcgtt tgtcgaaaac
     1201 ctgacagttc ccggctagtg cacttcggac gcccctttgg gacgtaacag cggactttta
     1261 tgaacactac acaagacctg tcgatcattt ctctcgtcat ccatgccagc ctgttggcgc
     1321 aggccgtcat ggcgctgttg ctgctgctgt cgttgctgtc gtggacttac atcatccgca
     1381 agtggtttgc cattcggcgc gcacggaatc agaccgagcg cttcgaacgc gatttctggt
     1441 cgggcggcga cctgcaggcg ctttatcaaa gcgctgccaa caaccgccac acaattggcg
     1501 cgctggaacg gatcttcgaa tcgggcatgc gtgagttcct gaaaggcaaa gaacgccgca
     1561 tgaacgatcc ggcggccatc ctcgacggtt cccgccgcgc gatgcgcgct gcgttccagc
     1621 gtgaaatgga tgtgctcgaa gtgaacctcg cgtttctcgc gtcggtgggt tcggtcagtc
     1681 cgtatatcgg tttgttcggc acggtctggg ggatcatgaa ttcgttccgc ggccttgcca
     1741 acgtacagca ggcaacgctt gcgaacgtgg cgccgggtat tgccgaagcg cttgtggcca
     1801 cggcaatcgg cctgttcgcc gcgattccgg cggtggtggc gtataaccgc tacgcacacg
     1861 atatcgaccg cctcgcgatc cgcttcgaaa cgtttatcga agagttctcg aacatcttgc
     1921 agcgtcaggc tcactaagga
//
LOCUS       DATGBK010001145         1783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_314545, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001145 DATGBK010000000
VERSION     DATGBK010001145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314545"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..810
                     /locus_tag="VKJ77_16000"
     CDS             <1..810
                     /locus_tag="VKJ77_16000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HMC46823.1"
                     /translation="GLHDVTSSAVGMGNTEPGILSITAGTFSINEILSDRPQLDPRWS
                     CRNGTRPGQWMNMSISPASSSNVDWFLREFFAHEAQQASQRGCSLFDLIGDELQAAFA
                     EPSSVMFHPFLFGSPFEQPASASFFGIRGWHRRAHLARAVLEGMVFNHRYHVEALTSA
                     LPARRAGLTGGGSSSPMLAQLFADTLGIPIDIPENQEASALGAALCAGVSAGAFASLA
                     EAGSRACRIQRTHQPDPERHAQLTEAYNLYMQLISGMNPLWPALNRAATAH"
     gene            826..>1783
                     /locus_tag="VKJ77_16005"
     CDS             826..>1783
                     /locus_tag="VKJ77_16005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC46824.1"
                     /translation="MTERSREFFLDRLAQQRRVSVLIVGGGINGAGLFRDLSLQQVDC
                     LLIDKADFASGASSAPSRLIHGGLKYLETGEFGLVAESTLERNLLLKNAPHFVLPLET
                     VLPIHSYFGGIVASTLRFFGVKSKLADRGAIISKLGLTIYDFLGRHHRTMPRHHVALR
                     KRSLQNLPLLDPAIKATATYFDAQVTQAERLNYELVADGLAACEEAAAANYVTVDHVE
                     GDTVWLRDLVSERLFPVTPTVIINAGGAWIDTVNHSLGIKRTYIGGAKGSHLIVTHPE
                     LHAQLRGRMVYFGSKDGRICLVYPFMDRLLIGSTDIRVRDPDQ"
BASE COUNT          342 a          543 c          523 g          375 t
ORIGIN      
        1 gggttgcacg acgtaacgtc cagtgccgtc ggcatgggca acacggagcc gggtatcttg
       61 tcgatcacgg ctgggacgtt cagcatcaac gagatcctgt cggaccgtcc gcaactggat
      121 ccgcgctggt cgtgccgcaa cggcacacgt cccggccaat ggatgaacat gtcgatttca
      181 ccggcctcgt cgagcaacgt cgactggttc ctgcgtgaat tttttgcgca cgaagcgcaa
      241 caggcttcgc aacgcggatg ctcattgttc gacctgatcg gagacgaatt gcaggctgca
      301 ttcgccgagc cgagttccgt gatgttccat ccgttcctgt tcggttcccc tttcgagcag
      361 cccgcgagcg cttcgttctt cggtatccgc ggctggcacc gccgcgccca tctggcgcgg
      421 gcggtgctcg aaggcatggt cttcaatcac cgataccatg ttgaagcact gaccagcgct
      481 cttcccgcgc ggcgggcggg tctgaccggt ggcggatcat cgagtcccat gcttgcgcag
      541 ttgttcgccg ataccctcgg gattcctatc gatatcccgg aaaatcagga agccagtgcg
      601 ctaggcgcag cgctctgcgc tggcgtgagc gcgggagcgt tcgcatcgct agcggaggcg
      661 gggtcgcgag catgccgtat tcagcggacg caccagccag acccggaacg tcacgcccag
      721 ctcaccgagg cgtacaactt gtacatgcaa ctcatttcag gcatgaaccc attgtggccg
      781 gcgctcaatc gcgcagccac tgcgcattga tgacgagaca aagcgatgac cgaacgatcc
      841 cgcgaattct ttctcgaccg gcttgcgcag cagcgccgtg tcagcgtgct aattgttggt
      901 ggcgggatta atggtgcagg gctattccgc gacctgtcgt tgcagcaggt cgactgcctg
      961 ctgatcgata aggcggactt cgcctcaggc gcaagctcgg cgccatcgag gctcattcac
     1021 ggcggcctga agtatcttga aaccggtgaa tttggcctcg ttgcagaatc cacgcttgaa
     1081 cgcaatcttt tgctgaaaaa cgcgccgcac ttcgtactgc cattagagac ggtactgccg
     1141 attcattcgt attttggcgg catcgtcgcg tctacgctgc gctttttcgg tgtcaagtcg
     1201 aagctcgccg accgcggtgc gatcatttca aaactcggtc tcacgatcta cgattttctc
     1261 ggccgccatc accggacgat gccgcgccat cacgtcgcgc tcagaaaacg ttcgcttcaa
     1321 aatctgccgt tgcttgatcc cgccatcaag gcaactgcca cctatttcga tgcacaagtc
     1381 actcaggccg aacgactgaa ctacgaactg gtagccgatg gactggccgc ttgcgaggaa
     1441 gcagcggctg caaactacgt gacggttgac cacgtggaag gggacacggt ctggctacgg
     1501 gatctcgtgt cagagcggct ctttcctgtc acaccgaccg tcatcatcaa cgcgggtggc
     1561 gcctggatcg acaccgtgaa ccactcgctc ggcatcaagc gaacgtacat cggtggagcg
     1621 aagggatcgc acctgatcgt gacgcatccg gagctccatg cgcaactgcg gggccgcatg
     1681 gtgtacttcg gctcgaagga tggccgcatc tgccttgtct atccgtttat ggatcggctg
     1741 ctgatcggtt cgaccgatat ccgcgtgaga gaccccgacc agg
//
LOCUS       DATGBK010001146         2240 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_199213, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001146 DATGBK010000000
VERSION     DATGBK010001146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199213"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..698)
                     /locus_tag="VKJ77_16010"
     CDS             complement(30..698)
                     /locus_tag="VKJ77_16010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008345394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RraA family protein"
                     /protein_id="HMC46825.1"
                     /translation="MNPPGWRRHASATQASPEILEILRGLAVSLLSDNMARVSGTIGL
                     VPYHRPKPMAGTAVTVRTRPGDNLAIHRAFDFCRPGDVLVIDGGGDITQALMGEIMAT
                     YAESLGVKGLVIDGAIRDVGAIRGHDFPVYARAATHRGPYKNGPGEVNVAVTVGGMVV
                     HPGDIIVGDEDGVLAIAPTDVATVIEGAKRQADKEAAALRSIAEGRFEREWIAPQETK
                     MMGG"
     gene            complement(713..1747)
                     /locus_tag="VKJ77_16015"
     CDS             complement(713..1747)
                     /locus_tag="VKJ77_16015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC46826.1"
                     /translation="MIIDCHGHYTTSPREHEAWRAAQIAALKDGTSPPPRPVITDEQI
                     RDSIEAGQLRIQRERGTDLTIFSPRAAGMGHHLAGADANAHWSQESNDLIHRVCQMFP
                     RNFVGVCQLPQAPGVSPENCIPELRRCVEQLGFIGCNLNPDPSGGYWTGPPLTDRSWY
                     PLYETMVELNVPAMIHVSSSCNPNFHATGAHYINGDTSAFMQLLTADLFADFPDLRFI
                     IPHGGGVVPYHWGRYRGLAQDMKRPLLKDYLLKNVFFDTCVYHQPGTELLAKVIPVEN
                     ILFASETIGAVQGIDPETGHYYDDTRRYIDAIPWLTPADRQRIYEDNARAVYGRLSNQ
                     LDIQLNHQRS"
     gene            complement(1769..>2240)
                     /locus_tag="VKJ77_16020"
     CDS             complement(1769..>2240)
                     /locus_tag="VKJ77_16020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008345397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46827.1"
                     /translation="PPLLGVLGTLVISRSSDRTGDRKKHLAFVYGMSALAIAGSAYAP
                     NPVIAYALLCVTGLFIYAGNPLFWSLASSFRTGAAGAATIALINTVAQFGGLVGPWSI
                     GLVRSATGNFKLALLTIAAFLVVATIIALVMRVTPPEDEIDALPAGESHAGHLH"
BASE COUNT          426 a          683 c          718 g          413 t
ORIGIN      
        1 ccgccgcagg cgccagaagc cgatcgcctc taacccccca tcatcttcgt ctcctgtgga
       61 gcgatccatt cgcgttcaaa gcgaccctcg gcaatggaac gcaacgcggc cgcttccttg
      121 tccgcctgcc gctttgcccc ttcgatgacc gttgccacgt ctgtgggcgc tatcgcgagg
      181 acaccgtctt cgtcgcctac gatgatatct ccgggatgca ctaccatgcc gccgacggtg
      241 accgccacat tgacctcgcc aggaccgttc ttataagggc cacgatgcgt cgcggcacgc
      301 gcatagaccg ggaagtcgtg tcctcgaatg gcgcccacgt cacggattgc gccgtcgatg
      361 accaacccct tcacgccgag gctttcggca taggtcgcca tgatttcgcc catcagcgct
      421 tgcgtgatat caccgccgcc gtcgatcacc agcacatcgc cgggccggca aaaatcgaat
      481 gcgcgatgaa tggcgaggtt gtcgccggga cgggtgcgca cggtcaccgc tgtcccggcc
      541 atgggcttgg gccggtgata cggcacgagt ccgatcgtgc cgctgacacg cgccatgttg
      601 tcgctgagca gcgagacagc gaggccgcgc agtatctcga gtatctcggg gctggcttgc
      661 gtggccgacg catgacggcg ccatccgggt ggattcatca cgatcatctc ctttaggaac
      721 gctgatgatt aagttggata tcaagttgat tggacaaacg cccgtacacg gcacgcgcgt
      781 tgtcttcata gatgcgctgg cgatcggccg gtgtgagcca ggggatcgca tcaatatagc
      841 gacgggtatc gtcgtagtag tgaccggtct cggggtcgat accctggacc gcgccgatcg
      901 tttccgacgc aaacaggatg ttctcaaccg ggatcacttt cgccagcagc tcggtgccgg
      961 gctggtggta cacgcaggta tcgaagaaca cgttcttgag caggtaatcc ttgagcagcg
     1021 ggcgcttcat gtcctgagcg agcccgcgat aacgccccca gtgataagga acgacgcccc
     1081 cgccgtgggg aatgatgaaa cgcaggtcgg gaaaatcggc gaacaaatcc gccgtgagca
     1141 attgcatgaa cgcggaggtg tcgccgttga tgtaatgcgc gccagtcgca tggaagttgg
     1201 gattgcacga cgacgacacg tggatcatgg ccggcacgtt cagctccacc atcgtttcgt
     1261 agagcggata ccacgagcga tccgtcagcg gtggcccggt ccagtaaccg cccgatgggt
     1321 ccgggttgag attgcagcct ataaaaccaa gctgctcgac acagcggcgc aactcgggaa
     1381 tgcagttctc gggcgatacc ccgggcgctt gcggcaactg gcagacaccc acgaagttgc
     1441 gcggaaacat ctggcacacg cgatgaatca ggtcattgct ttcctgcgac cagtgcgcgt
     1501 tggcatcggc cccggccagg tgatgtccca tgccggcagc ccgtggcgaa aagatcgtga
     1561 gatccgtgcc gcgctcccgt tgaatgcgta actgcccggc ttcaatgctg tcgcggatct
     1621 gctcgtccgt gatgacggga cgcggcgggg gggatgtacc gtctttgagc gctgctatct
     1681 gggcggcgcg ccaggcttca tgttcgcgcg gggaggtcgt gtagtgacca tgacagtcaa
     1741 tgatcattgc gggtttccgg atcaaggttc agtgaaggtg tccggcgtgg gactcgccgg
     1801 ccggcagtgc gtcgatctcg tcttccggcg gcgtgacccg catgaccagc gcgatgatgg
     1861 ttgccaccac caggaaggcc gcgatcgtca ggagcgccag cttgaagttg cccgtggcgc
     1921 tgcgcacgag cccgatgctc caggggccaa cgagcccacc gaactgggcg acggtattga
     1981 tgagcgcgat cgtcgcggcg ccggcagcgc cggttctgaa cgacgaggcg aggctccaga
     2041 acagcgggtt gcctgcatag atgaaaagcc cggtcacgca caggagcgca taggcgatca
     2101 ccggatttgg cgcgtaggca ctgcccgcaa tagcgagcgc gctcatgccg tacacgaacg
     2161 cgagatgctt cttccggtcg ccggtccggt cggagctgcg gctgatcacc agcgtgccga
     2221 ggacaccgag aagcggcgga
//
LOCUS       DATGBK010001147         4288 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_60471, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001147 DATGBK010000000
VERSION     DATGBK010001147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4288
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60471"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            86..1408
                     /locus_tag="VKJ77_16025"
     CDS             86..1408
                     /locus_tag="VKJ77_16025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011204962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46828.1"
                     /translation="MSDSIQTAYTGDEFSPSGTRPDAASARRNVVAVALGNAVEFFDF
                     GTYATFAVMIGHTFFPAKSPFISLLLSVSVFGLGFVVRPLGAVLIGAYADRAGRKPAM
                     MLTLVLMAVGTGAIAILPGYQTLGIAAPILLVVTRLVQGLAWGGEAGPATTYILESAP
                     LDRRGSYACWQVATQGFAAVAAGLTGYGLAVVLPEQALNSWGWRVPFVFGLLVLPVGI
                     YIRRRLADTIQEHDAPTSTREILHELNTSHRRPIVIGLLILLGSTITQYFLNYMTTFA
                     LTELHLPGRVAMLATLVTGAALAVFAVAGGQLCDRLGRRAVLIWPRVLLLALIFPALN
                     LIVSHPTPLVFLSTITVLSALHGMSGAALIVLIVESFPSRVRSTGFSIVYAVAVSVFG
                     GTAQLIITWLIGTTGNPMSPVAYLLAANAICIGAGFMAAETKPARAGQ"
     gene            1440..2504
                     /locus_tag="VKJ77_16030"
     CDS             1440..2504
                     /locus_tag="VKJ77_16030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010114567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC46829.1"
                     /translation="MKYTRKGKFNRLGQLAALVGGLGSGAAHAQSSVTLYGLLDAGLQ
                     YKTHADAAGDSVVTSSNAGTSYPSRFGLRGSEDLGGGWRAIFNLENGFSLSNGALASS
                     DTLFNRVALVGLSGRYGTFTAGRQYSVQYDKTVFYEPTLFNNYSIFSLNMIPSAMVRL
                     NNSVKYQSPDMSGLNVEAMYSFGQQLAGNSEAGRYWGAATEYVTGNFSARVGYEELRG
                     SVSGTVDQSNLVDRRASAVARYGFDKVVISGGAVAVRGSLEASPDGNIYWLAASYMPN
                     PALKLVLEGGRYYYQHDAGRPTLFNATALYWLSKRTTVYLTGGYTINGGGSDFGVNNY
                     TTTAPGQTQLALGTGLIVRF"
     gene            complement(2531..3466)
                     /locus_tag="VKJ77_16035"
     CDS             complement(2531..3466)
                     /locus_tag="VKJ77_16035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010102478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46830.1"
                     /translation="MQLRTLRYFQELAHSSSLRKASERLHVAPSAISRQIEQLEHYFG
                     VALLERGPRGISLTIEGEFLAERVDFMLREFDQVRTLIADRHKLEVGSVSVYASEGVV
                     SGLLAPVLAEFSRQYPKIRFNIVIASAQRTLEALCSGEADIGLGFYLPKRADVEVHAH
                     CELWHRVLVSPRHAFSQRESVTLADLVDQPLAIPDSAFGVRQALDRVAKASGITLNPS
                     FTTCSLETQKALARQGAALLILPQFDLDDSGCEDGLHAVTITDPDLRQIRVELCVYRY
                     RPTSIAVRKCMDMLQTAMARYASAVHPTAEAEPSP"
     gene            complement(3832..>4288)
                     /locus_tag="VKJ77_16040"
     CDS             complement(3832..>4288)
                     /locus_tag="VKJ77_16040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017330619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC46831.1"
                     /translation="AGELDLALVVRHGERAGGKPLARQELVWAAHRDFVLCADAPVPL
                     ALFDESCTYRQRGLQALTAISRDYQLVYTSQSPTGIRIAVNHGAAVTIIDRRTLPSCW
                     RTFGESDGLPALPPAELELHIAPTMRNEATRDLSALIEMLVSEHSGAMA"
BASE COUNT          761 a         1318 c         1337 g          872 t
ORIGIN      
        1 atttgccccg atgcgcccac tccggccgca gcgcttaccc gcgggcggcg ggctggtcat
       61 gtttgctctt aacgaaggac atgtcatgtc agattcaatc cagacagcct acaccggcga
      121 cgagttcagt cccagcggca cgcgtccgga cgccgcgagc gcacgccgaa acgtggtggc
      181 ggttgcgctg ggcaacgccg tcgagttctt cgacttcggc acgtatgcga ccttcgccgt
      241 aatgatcggc cacacgttct ttccggcgaa aagcccgttt atcagcttgc tgctttcggt
      301 gtccgtgttc gggctcgggt tcgtcgtgcg gccgctcggc gcggtgctga tcggtgctta
      361 tgcggaccgc gccggacgca agcccgccat gatgctcacg cttgtactga tggcggtagg
      421 caccggcgcg atcgcgatat tgccgggcta tcaaacgctc ggcattgcag cgcccatcct
      481 gctggtcgtg acgcggctgg tgcaagggct tgcctggggt ggcgaggcag gcccagcgac
      541 tacgtacatc cttgaatcgg cgccgctgga ccgccggggc tcgtatgcat gctggcaggt
      601 cgcgacgcaa ggtttcgcgg ccgtggctgc cgggctgacg ggctacgggc tcgctgttgt
      661 gctgcccgag caggcgctca attcatgggg ctggcgcgtg ccttttgtgt tcggcctgct
      721 ggtcctgccg gtcggcatct acattcgccg gcgtctcgcc gacacgattc aggaacacga
      781 cgcgccgacc tccacgcggg agattctcca cgaactcaat acgtcgcatc gccggccgat
      841 tgtcatcggc ttgctgatcc tgctcggcag cacgatcacg cagtacttcc tcaactacat
      901 gacgaccttc gcattgaccg agctgcattt gccgggccgc gtggcgatgc tcgcaacgct
      961 tgtcaccggg gccgcgcttg ctgtgtttgc agtcgcaggc ggacaactgt gtgaccgcct
     1021 cggccgccgc gccgtgctga tctggccgcg tgtcctgctg ctcgcactga tcttccccgc
     1081 gctgaatttg atcgtgtcgc atcccacgcc tctcgttttc ctcagcacca tcacggtcct
     1141 ctcggcgctg cacggcatga gcggcgcggc actgatcgtg ttgatcgtgg agagctttcc
     1201 ttcgcgcgtg cgctccacgg gattctcgat tgtctatgcg gtcgcggtgt cggtgttcgg
     1261 cggcaccgcg caactgatca tcacctggct tatcgggacc accgggaatc ccatgtcgcc
     1321 cgtcgcgtat ctgctcgcgg caaacgctat ctgcatcggc gcagggttca tggctgccga
     1381 gacgaaaccg gctcgcgccg gccaataacg gttacatcac cacacgttaa ggcatcgaca
     1441 tgaaatacac acgcaagggg aagttcaatc gcctgggtca actcgcggcg ctggtgggcg
     1501 gactgggcag cggggctgcg cacgcgcaga gttccgtgac gctatacgga ttgctcgacg
     1561 ctggcctgca gtacaaaacg cacgcggatg cggcgggcga ttcggtggtc acgtcgagca
     1621 atgcaggcac gtcttatccg tcgcgtttcg ggttgcgcgg tagcgaagac ctgggcggtg
     1681 gctggcgggc gatcttcaat ctggagaacg gtttttcgct gagcaacggg gcgctggctt
     1741 cgtcggatac gttgttcaac cgggtcgcgc tggtgggact gagcggacgc tacggtacgt
     1801 tcacggcggg gcgtcagtac agcgtgcaat acgacaagac ggtgttctac gagccgacgc
     1861 tctttaacaa ctactccatc ttttcgctga acatgattcc ctcggcgatg gtgcggctca
     1921 acaactcggt caagtatcag tcgccggaca tgagcgggct caatgtcgag gcgatgtaca
     1981 gcttcggtca gcagctcgcg ggtaactccg aagcgggacg ctactggggc gcggcaacgg
     2041 aatatgtgac gggcaatttt tcggcgcggg ttggctacga agagttgcgc ggctcggtga
     2101 gcggcaccgt cgaccagtcg aacctggttg atcgaagggc cagcgcggta gcgcgctatg
     2161 gctttgacaa ggtcgtcatt tcaggcggcg cggtggcggt gcgcggttcg ttggaggcat
     2221 cgccggatgg caatatctat tggctcgccg cctcttacat gccgaatccc gcgctcaagc
     2281 tcgtactcga aggcggtcgc tattattacc agcacgacgc aggacgtccg acgctcttca
     2341 acgccactgc actttactgg ctgtcgaaac gcactaccgt ctacctcacc ggcggttata
     2401 cgatcaacgg tgggggcagc gatttcggcg tcaacaacta cacgaccacc gcgcccggcc
     2461 agactcaact ggcgttggga acgggcctga tcgtgcgctt ttgagcgtgc cctcttgagt
     2521 ctcgtttcgc ttacggcgat ggttcggctt cggccgtggg atggaccgcg gacgcgtaac
     2581 gcgccatcgc cgtttgcagc atgtccatgc acttgcgaac ggcaatcgat gtggggcgat
     2641 agcggtacac gcagagttcc acgcggatct gacgcaagtc gggatcggtg attgtcacgg
     2701 catgcaggcc gtcctcgcag ccgctatcgt cgagatcgaa ttgcggcagg atcagcagcg
     2761 ccgcgccttg tcgtgcgagc gctttctgcg tctccagcga gcaggtggtg aacgatggat
     2821 tcaacgtgat gccactcgct ttggccacgc gatccagtgc ttgccggaca ccgaacgcgg
     2881 agtcgggaat agcgagcggc tggtcgacga gatcggcgag cgtgacactt tcgcgttggc
     2941 tgaacgcgtg acgcggcgac accagcacgc gatgccagag ctcgcagtgc gcgtgcactt
     3001 cgacgtcggc gcgcttgggc agatagaaac cgagtccgat gtcggcctcg ccgctgcata
     3061 gtgcttcgag cgtgcgttgc gcactcgcta tgacgatatt gaagcggatc ttcggatact
     3121 gccgcgagaa ctcggcaagc accggcgcga gcaaccctga caccacgccc tccgatgcat
     3181 acacagacac cgagccgacc tcgagcttgt gccggtcagc aatcagcgtg cgtacctgat
     3241 cgaactcccg cagcatgaag tcaacgcgtt ccgcgagaaa ctcgccttct atcgtcaggc
     3301 tgataccgcg tggtccgcgt tccagcagcg cgaccccgaa gtagtgttcg agctgctcga
     3361 tctgccggct gattgcgctc ggtgcgacgt gtagccgctc ggaggccttc cgcaacgacg
     3421 aactgtgggc gagttcctga aaataacgga gcgtgcgaag ttgcattgag ctgtcctttg
     3481 caacggtgat cgagtgggtt ctaatgcggc ggaaataggg gcgttaagag acgccacctc
     3541 gtagtgtcga ccgccaataa agcgcccgcg agtggtttta ttggattgat gctcgggcgt
     3601 gtttagtacg tatgccgaag tgccgtgcaa tgacttgcac gaaatgactc aacattccga
     3661 agtggctttt cgatgcgagg cgagtcagcc cttcatctgc acacgatgct cggcaactta
     3721 gattcaatac cgcccagtca cacgaggcgt gcactttcgc gatcaatcaa cgcgttgagt
     3781 gcttcacgga tcaacgccga cttttcctcg cggcatcttc tcctgacgcc atcacgccat
     3841 cgcgccgcta tgctccgaca ccagcatctc gatcaacgcg ctcaggtcgc gcgttgcttc
     3901 gttacgcatg gtcggcgcaa tatgaagctc cagttccgcg ggtggcagcg ccggcagacc
     3961 gtccgattcg ccgaacgtgc gccagcacga gggcagcgta cgacggtcga tgatcgtcac
     4021 cgccgcgcca tgattcaccg caatgcggat gccggtcgga ctctggctcg tgtacacgag
     4081 ttgataatcc cggctgattg cggtcagcgc ctgcaatcct cgctgccgat aagtacaact
     4141 ttcgtcgaag agagcgagcg gcaccggcgc gtccgcgcac aacacgaaat cgcgatgtgc
     4201 cgcccacacc agttcctgac gcgccaaggg ttttcccccg gcacgctcgc catgccgcac
     4261 gaccagcgcc agatcgagtt cacctgca
//
LOCUS       DATGBK010001148         1529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_337571, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001148 DATGBK010000000
VERSION     DATGBK010001148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337571"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..563)
                     /locus_tag="VKJ77_16045"
     CDS             complement(<1..563)
                     /locus_tag="VKJ77_16045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HMC46832.1"
                     /translation="MPTYTLAAAVSAEIDIRKSRFIARAIPVADRAAAMLELDALRVQ
                     HPGATHVCWALLAGGESGMSDDGEPSGTAGRPILEVLRHHEVDGVLAAVVRYYGGIKL
                     GAGGLVRAYTDAIATAMQLAERIERVALGLLQVEVDYADEARVRRWIEQEDHTLDEPG
                     YGMTVCLSIRMPLAVRDQAADVIRDLT"
     gene            complement(692..1237)
                     /locus_tag="VKJ77_16050"
     CDS             complement(692..1237)
                     /locus_tag="VKJ77_16050"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC46833.1"
                     /translation="MALHEASALTIRDANAADFDSITRIYAHYVLHALATFEETPPGA
                     DEMRARHASITGAGLPYLVAEMDGVVVGYTYATAYRPRSAYRHTIEDSVYIADGFGGR
                     GLGLALLTALIERCDAGPWRQLIAVIGNSGNAGSIALHARLGFEHVGVLRKVGYKHGQ
                     WVDTVLMQRSLGEEKALIPQK"
BASE COUNT          298 a          462 c          484 g          285 t
ORIGIN      
        1 tgggtcaggt cccggataac gtcggcggcc tggtcgcgta cggcaagcgg catccggatc
       61 gacaggcata cggtcatgcc gtagccgggt tcatcgagcg tatggtcttc ttgttcaatc
      121 cagcgccgca cccgcgcttc atcggcgtaa tccacttcca cttgcagcag gccaagcgcc
      181 acgcgttcta tgcgttctgc aagttgcatc gcggttgcaa tggcgtccgt gtacgcgcgg
      241 accaggcccc cggcgccgag cttgatgccg ccgtagtagc gcacgacggc ggccagcacg
      301 ccatccactt cgtgatgccg cagcacttcg agtatcggcc ggccggcggt gccggaaggc
      361 tcgccatcat ccgacatgcc ggattcaccg cccgccagca gcgcccagca gacatgcgtg
      421 gcgccgggat gctggacgcg cagcgcatcg agttcgagca tcgcggccgc gcgatcggcg
      481 acaggaatcg cgcgcgcgat aaagcggctt ttgcggatgt cgatttctgc actgacggcg
      541 gcggcgaggg tgtaagtggg caactaaagc tcagggtgtt gtgagagagg acagaggcga
      601 ccaaagggtc gcgatgctat gcaatggtat ggcgaatgcg ttgccactgc gaactatccg
      661 gagatgaatc gcgtgagccg gtttgcgtgg cttatttctg cggaatcaac gccttttcct
      721 cgccgaggga gcgttgcatg agcacggtat cgacccattg gccgtgtttg tagcccacct
      781 tgcgcaacac gccgacatgc tcgaatccaa ggcgcgcatg caacgcgatc gagccggcgt
      841 tgccactgtt gccgatcacc gcgatgagtt ggcgccacgg tcccgcgtcg caacgttcga
      901 tcagcgccgt cagcagtgcg agaccgagac cacgcccacc gaagccatcg gcgatataaa
      961 ccgaatcctc aatcgtgtgc ctgtacgccg atctgggccg atacgctgtc gcatacgtgt
     1021 aaccgaccac cacgccgtcc atttcagcta cgagataggg caggcctgca ccggtgatcg
     1081 atgcgtgccg ggcgcgcatt tcgtcggcac ccgggggcgt ttcctcgaag gtcgccaggg
     1141 catgcagcac gtaatgggcg taaatgcggg tgatcgaatc gaaatcggcg gcgttcgcgt
     1201 cgcggatcgt gagtgcgctg gcttcgtgca atgccatcga gtgcctccgt ggtttgggtg
     1261 ttgatcgtgt caatcggcca gtgagaaagg tcatcatcca gaggtccgat tttctcacga
     1321 ctatcgcact catccgccaa ttaccagacg tctgcgcact cacaccagaa aagcgtcgag
     1381 ccggcgtgcg ccagcccacc aaagcgggca tttcgtgggc agagaagcat tgaaacccgg
     1441 tgtacccggc cgctaaactg ggctgtttgc agggacgatg cgagaaaaca gggatacggt
     1501 tgtcagccaa gcggacacga cttacggcg
//
LOCUS       DATGBK010001149         1832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_129315, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001149 DATGBK010000000
VERSION     DATGBK010001149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129315"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VKJ77_16055"
     CDS             complement(<1..254)
                     /locus_tag="VKJ77_16055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46834.1"
                     /translation="MAKQPEDTSTTDLFDSALSESIGHTLQLGKADAGKTVWSVPESV
                     SRIRTFRARRKLFPSDGSSRDTAACELCGTRHHGPCARTRT"
     gene            complement(254..559)
                     /locus_tag="VKJ77_16060"
     CDS             complement(254..559)
                     /locus_tag="VKJ77_16060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46835.1"
                     /translation="MMDLFGTKAKRQLAAIQEVVAQSAHGIHKRIDENRELLETLQRD
                     FPHLLSSYWWIEGWVESQDQFLTDLAVATRVVRGRSNENFPRPWPGRLSERAKRGEK"
     gene            complement(556..>1832)
                     /locus_tag="VKJ77_16065"
     CDS             complement(556..>1832)
                     /locus_tag="VKJ77_16065"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HMC46836.1"
                     /translation="ITDYEKAERREGAPLPMSLNELTVAACTKFGCTGAEVLEAAQKL
                     YDRPLQLTTYPRTEVRHLSEAQHADAPEILAALRKNLPAMQGVIDRTDPSLKSSAFND
                     KKVDGTSHHGIVPTVATADLSGLTPLERNVYDMIVRSYLAQFYPPAVFMQTKIEAHVD
                     GERFLASGKTPVLPGWREVYAPVEDDAVAASADADGSEGKQQLPAMAQGDAATCAACT
                     LQSRETKAPERFDESSLLKAMIDLHKFTTDPAAKARLKEGKGIGTSATRAGIISELRE
                     RGFLEPVKGSKTKFMTSKSGRGLLDALPGPVKDPTMAGMFKIALDGVASGEISYEQFI
                     ERNVGFITKVVTGLRTASMNLPVAPGVPCPKCKSGQLRQIKSEKGPFWGCSNFNAEPK
                     CSASYPDQDGKPNFQMKAKPAKGFGIKKAEVA"
BASE COUNT          320 a          585 c          534 g          393 t
ORIGIN      
        1 gtgcgcgtgc gcgcgcacgg accgtgatgg cgcgtgccac acagctcgca agcggcggtg
       61 tcgcgggaac taccatcgct cgggaaaagc ttgcgacgcg cacggaacgt gcgaattcga
      121 gatacagact cgggaacgga ccacaccgtt ttgccggcgt cggccttgcc gagctgcagc
      181 gtgtgaccaa tgctttccga cagcgcgcta tcgaacaggt cggtcgttga cgtgtcttca
      241 ggttgcttgg ccatcatttc tccccgcgtt tcgcgcgctc actcagtcgg cccggccacg
      301 ggcgcgggaa gttttcgttc gaccggcccc gcaccaccct ggtggcgacc gccagatcag
      361 tcaggaactg atcctgtgac tcaacccatc cttcaatcca ccagtagctg ctcaacagat
      421 gcggaaagtc tctctgaagc gtttcgagta actctcggtt ttcgtcgatg cgcttatgaa
      481 ttccatgcgc actctgcgcg accacttcct gaatcgctgc gagctgacgc ttggcctttg
      541 ttccgaaaag atccatcacg cgacctccgc tttcttgatt ccgaagccct tagccggctt
      601 tgccttcatc tggaaattgg gtttgccgtc ctggtcggga taagacgccg aacacttggg
      661 ctcagcattg aaattcgagc agccccagaa gggtcccttc tcgctcttga tctggcgcaa
      721 ctggccgctc ttgcatttcg ggcacggcac accaggcgcc accggcaagt tcatcgacgc
      781 ggtacgcagg ccggtcacga ccttcgtgat aaacccgaca ttgcgttcga tgaactgctc
      841 atagctgatc tcgcccgaag ccacgccatc gagcgcgatc ttgaacatgc cggccatcgt
      901 tggatccttg acgggtccgg gcagcgcatc gagcaatcca cggccgctct tgctcgtcat
      961 gaacttggtc ttcgagccct tcaccggttc cagaaagccc cgctctcgta gctccgaaat
     1021 gatcccggcg cgcgtggcac tggtgccgat ccccttgcct tctttgaggc gtgccttcgc
     1081 ggccggatcg gtggtgaact tgtgcagatc gatcatcgcc ttgagcagcg aggattcatc
     1141 gaaccgctca ggcgcttttg tctcccggct ctgcagcgtg caagccgcac acgtggcagc
     1201 gtcgccctgg gccatcgctg gcaactgctg cttgccctcg ctaccatcgg cgtcagcgct
     1261 ggcggccacc gcgtcgtctt cgaccggcgc atagacctcg cgccagcccg gcaacaccgg
     1321 cgttttgcca ctggcaagaa atcgctcgcc atcgacatgg gcttcaatct tggtttgcat
     1381 gaagaccgct ggcggataga actgcgcgag atagctgcgc acgatcatgt cgtagacgtt
     1441 tcgttcaagc ggcgtgaggc cggaaagatc ggcggttgct accgttggca cgatgccgtg
     1501 gtggctcgtg ccatcgacct ttttgtcatt gaaggccgag gacttgagcg acggatccgt
     1561 acgatcgatc acgccttgca tggcgggcag gttcttgcga agtgcagcga ggatctccgg
     1621 tgcgtccgcg tgctgcgctt cggacaaatg ccgcacttca gtgcgcggat aggtcgtcag
     1681 ctgcaaggga cggtcgtaca gcttttgcgc ggcctccagg acctctgctc ccgtgcaacc
     1741 aaatttcgta caggcggcca ccgtcagctc gttgagcgac atcggcagcg gcgcaccctc
     1801 gcggcgctca gccttctcgt agtcggtgat gc
//
LOCUS       DATGBK010001150         1590 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_175688, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001150 DATGBK010000000
VERSION     DATGBK010001150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175688"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..1483)
                     /locus_tag="VKJ77_16070"
     CDS             complement(101..1483)
                     /locus_tag="VKJ77_16070"
                     /inference="COORDINATES: protein motif:HMM:NF033572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISKra4 family transposase"
                     /protein_id="HMC46837.1"
                     /translation="MKFELILAVDSGDGQITNVPLAQMTRPDVSELATLGLSLSESKQ
                     LLAQLQREIVTRQFEATTHRRRHCGQCGTKRAIKDFHGARFRSLFGDVELRVPRLRKC
                     QCAVDSPVQGSANATLRQRWIAPELECAQSELAAVLPYGRSAALLSKLLPIGAGNSAS
                     TVRARTLHVGQRLESELTAAPVKPPRSRTPQPHVTTVGLDGGYVRHCDRAAGHSFEII
                     AGRLLADDGAQSSVGFVRTVDQHSRTRVQRAVAEQGKTSDHLMVFTDGDSRLRDLQLS
                     VLPRATHVLDWYHLTRRLTVLSNVVCSKEAAEQLPSREHARLSEWVGSIKWRLWHGRP
                     VTAIARLESLLSLLARPSLAGKAVAARTHKLAAELLQYLKNNAESLPNYGRRYRAGER
                     ISTAFVESVVNQIIDKRMSKSQQMRWSPESAHLLLQVRIRVIDGRLRQDFERWYPGFT
                     ANDATLQLSA"
BASE COUNT          287 a          495 c          501 g          307 t
ORIGIN      
        1 ggtgacgggg aacggtgccg cgcgaatgat gaatcttatc caccgattca ttaacagctc
       61 tatgccacca attcagggga gagcgttcta tttggtgggg tcaggcgctg agttggaggg
      121 ttgcgtcgtt ggcggtaaag cctgggtacc accgttcgaa gtcctgacga agacggccgt
      181 cgatgactcg gattcgcacc tgaagcaaca ggtgtgcact ctccggcgac caacgcattt
      241 gctgcgactt cgacatgcgc ttgtcgatga tctggttgac gacggactcc acgaacgcgg
      301 tcgagatgcg ctcaccagct cgataccgcc ggccatagtt gggtaacgat tcggcgttgt
      361 tcttcaagta ttgaagcaac tcggcggcaa gcttgtgggt tcgagccgcc acggccttgc
      421 ccgccaaaga aggccgcgcg agcaggctca gcaaagattc gagccgggcg atggcggtga
      481 cgggtcggcc gtgccaaaga cgccacttga tcgagccgac ccactccgat agccgggcgt
      541 gctctcgtga gggcaactgt tctgcggctt ccttgctgca cacgacgttg ctcaacacgg
      601 tcaggcgccg cgtcaggtga taccagtcca gcacatgtgt cgccctgggc agtacggaca
      661 gctgcaagtc acgcaagcgg ctgtcgccat cggtgaagac catcaggtga tcgctggtct
      721 tgccctgttc ggcaacggct cgctgtactc gtgtacgcga gtgctgatcg acggtgcgca
      781 caaagcccac gctgctctgc gcgccgtcgt cggcgagtag ccgtccggca atgatctcga
      841 aggagtgccc tgcagcgcgg tcgcaatggc gaacatagcc accgtccagg cctactgtcg
      901 tgacgtgagg ctggggcgtg cgactacgtg gcggtttcac gggcgcagcc gtcagctccg
      961 attccaggcg ttgtccgacg tgcaaggtac gagcccgcac tgtgctggca ctgttgcccg
     1021 ccccaatggg caagagcttg ctcaggagcg ccgcgctgcg cccgtagggc aacactgcgg
     1081 cgagctcgct ctgggcgcat tcgagttccg gtgcgatcca gcgctgccgc agcgtggcat
     1141 tggcggagcc ttgtaccggc gagtccacgg cgcattggca tttgcgcaac cgcggcactc
     1201 ggagttcgac atcgccgaac agactccgga accgcgcccc atggaaatct ttgatggccc
     1261 gcttcgtgcc gcactgcccg cagtgccgac gccgatgcgt cgttgcctcg aactgccggg
     1321 tgacgatttc acgctgaagc tgcgccaaca gttgtttgct ctcggacagg ctgagcccca
     1381 acgtcgctag ttcgctgacg tcagggcgcg tcatctgcgc aagcggcacg ttggtgattt
     1441 ggccgtcgcc gctgtctacg gccaggatca gttcgaactt catgcgcaat ctccgtcgct
     1501 caactgggac gggattatcc agcaccgctc aaaacgctcc gctgttgcga ccggcgcgcg
     1561 ccaccccacc aaatagaacg ctctcggcca
//
LOCUS       DATGBK010001151         3907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_83325, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001151 DATGBK010000000
VERSION     DATGBK010001151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3907
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83325"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..366
                     /locus_tag="VKJ77_16075"
     CDS             <1..366
                     /locus_tag="VKJ77_16075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46838.1"
                     /translation="FSLLPFQPRFFCLNSHNRCLAACFGCSVNLRLSPCLVPGLSTPA
                     VSSRAAGLLLTALIPVSASVSVPVRRQTAGRCPATAASTASSCACANRPSSAVLILGV
                     QNWCVLSTKAFHPKKRDLG"
     gene            676..1374
                     /locus_tag="VKJ77_16080"
     CDS             676..1374
                     /locus_tag="VKJ77_16080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HMC46839.1"
                     /translation="MFEVRRANERGHANHGWLDSYHSFSFAGYDDPKHVHFGALRVIN
                     EDRVAGGQGFGTHGHRDMEIISYVLEGALSHKDSMGNGSTIRPGDVQRMSAGTGVRHS
                     EFNGSDTETAHFLQIWIIPDAAGNAPGYEEKRFDDAEKRGRLRVIASPEGRDGAVKLG
                     ADAEVYAGLFDGDERAEFDVPAGRRVYVHVARGAISVNGEALAAGDAAKLEGVSKVTL
                     DQGTGAEVILFDLA"
     gene            complement(1733..2314)
                     /locus_tag="VKJ77_16085"
     CDS             complement(1733..2314)
                     /locus_tag="VKJ77_16085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic heavy metal sensor"
                     /protein_id="HMC46840.1"
                     /translation="MLKQSRFLAITVAALALSIGAVNAASAATPDAPPPGGPGMMGGP
                     GGPGGHHGGMRMKKELDKLHGQLNLNADQEKAWQAALGTMKQNHEAMRESHKQMHAQM
                     ESMKQQPILDLNAMYAAHQKIEQQNAQLRDQTSAAWLNFYNTLNDQQKTTVSTALKQR
                     FARMEARREKMHERWGQHRGMPGAPAGASAANP"
     gene            2535..3257
                     /locus_tag="VKJ77_16090"
     CDS             2535..3257
                     /locus_tag="VKJ77_16090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC46841.1"
                     /translation="MATQILVVDDDAELRDLLRDYLVRQGIEVSVLHDAGTLERRLER
                     ERPDLIVLDLMMPGVDGLTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLG
                     KPFNPRELLARVQAVLRRRRTIPSAAPEQREPFSFGRFRLDFQSRTLHQDETPLTLSG
                     SEFALLKIFVNHPMRTLTRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRF
                     IQTVRGRGYVFVPDGEQNASAH"
     gene            3241..>3907
                     /locus_tag="VKJ77_16095"
     CDS             3241..>3907
                     /locus_tag="VKJ77_16095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HMC46842.1"
                     /translation="MRRPIDSLFGRLVVLVIGVLVLSHVAWFTVIRLERDQTQTRYAV
                     EEAAFLVDAVRQHIANSPDQPLPSSVRVVEPNSPDVPKPFTDADTSRVPPPFGRFIDD
                     LRDRLPDGTDVRIGEPGGPPRLWVRGVKDANWIVVPVQPLRPPRSRDRMLLWLAIIFS
                     TAVMAALFAAWQLQTPLRSLAQAVGRFGRGEPTPPVPERGPRELRQLTHGFNQMVREV
                     EQTE"
BASE COUNT          628 a         1182 c         1243 g          854 t
ORIGIN      
        1 ttttcgctgt tgccttttca gccgcgcttt ttttgcctga attcgcataa ccgctgtctg
       61 gcggcctgct ttgggtgttc ggtgaacctg cgcctctcgc cttgcttggt tcctggttta
      121 tctacacccg ccgtcagtag ccgcgctgcc ggtttacttt taactgcctt gatccctgtt
      181 tctgcttctg tttctgttcc agttcgtcga caaaccgctg gccgctgccc ggccaccgcc
      241 gcctcaaccg cgtccagctg cgcttgcgcc aaccgaccgt cctcggcggt gcttattcta
      301 ggtgtccaaa attggtgcgt tttgtcgaca aaggcctttc acccgaaaaa acgcgatctc
      361 ggctgaagcc cgcgtctgaa gtccgcggac gcaccgtgcg gctttcccgg cgcggcttgt
      421 ccggcggggc gtcgacatct ccggcgctcc ctgacccttg aaaaggccgg tattctaccc
      481 gaagctgatc ggtgcgcctg cagtcgggtc ccggctttcc attgccctga tgcttcgggc
      541 aaaggccacc ggccacgccc gtgcgttgtc gcgattgcat gcattttcag gacggtgtgg
      601 tgcccgcggg ggcgattgtt tagcgcggtg tgtgccctta cattctctcc atcgcaatat
      661 caccgggagt tcgatatgtt tgaagttcga cgcgccaatg aacgcggcca cgctaaccat
      721 ggctggcttg attcgtatca cagcttttct ttcgccggct acgacgaccc gaagcacgtg
      781 catttcggcg cgctgcgggt catcaacgag gatcgtgtgg cgggtggtca gggtttcggc
      841 acgcacggcc atcgcgacat ggaaatcatc agctacgtgc tcgaaggcgc actgtcgcac
      901 aaggacagca tgggcaacgg ctcgaccatc cgacccggcg atgtccagcg catgagcgcc
      961 ggaaccggcg tgcgccatag cgagttcaat ggttcggaca ctgaaaccgc gcatttcctg
     1021 cagatctgga tcatcccgga cgcagcgggc aatgcgcctg gctacgagga aaagcgtttt
     1081 gacgatgctg agaagcgtgg ccggttgcgg gtgatcgcgt cgccggaggg acgggacggc
     1141 gcggtaaagc tgggtgccga tgctgaagtg tacgcaggtc tgttcgacgg cgacgaacgt
     1201 gcggaattcg acgtgccggc tgggcgccgc gtgtatgttc atgtggcgcg gggcgcgatt
     1261 tcggtgaacg gcgaagcgct cgcggccggc gatgccgcga agctggaagg ggtatcgaaa
     1321 gtcacgctgg atcaaggcac cggcgctgaa gtgatcctgt tcgacctggc gtaaatgggc
     1381 gtaagcgtta ctggctggtt cttcccggct tcggccggga gaacgttaaa aggccgcggg
     1441 agcaattccg aggccttttg tattgttttt agtgcgcctc ggatttcccg ggagagcctg
     1501 gatgacatcg cgtcgcgtgt ccgctggatc attacggaac cgtctcgtat cgattggtcg
     1561 tatcagccgt tgtttcaacg ccaaacgcaa tgttgcatta agccaatgca aaaaaagccg
     1621 ttccaacgtt ggtcggaatg gcttggctgt ggccatgcga ttgaactggc ggggcgcgcc
     1681 ggttcaatcg ccggcctcgg gtgcccgcct caagcaatgc tcatgcaacg gctcaaggat
     1741 tggcggccga tgctccagca ggcgcacccg gcatgccgcg atgctgaccc cagcgctcat
     1801 gcatcttttc ccggcgcgct tccattctgg cgaagcgctg cttaagtgcc gtgctgaccg
     1861 tggtcttctg ctggtcgttc agcgtgttat agaagttcag ccacgcggcg ctcgtctggt
     1921 cgcgcaactg ggcattctgc tgctcgattt tctgatgcgc cgcgtacatg gcgttcagat
     1981 cgagaatggg ctgctgcttc attgattcca tttgtgcgtg catctgcttg tggctttcac
     2041 gcatggcctc atggttctgc ttcatggtgc caagcgcggc ctgccacgct ttttcctggt
     2101 ctgcgttgag attgagctgg ccatgcaatt tgtccaactc tttcttcatc cgcattccgc
     2161 catgatgccc tcccgggcct ccaggaccgc ccatcattcc cggaccgccg ggcggcggcg
     2221 cgtcgggcgt ggcggcgctg gcggcgttga ccgcgccgat cgacagggcg agcgcagcga
     2281 cggtgatggc gaggaatcgg gactgcttca acatggtcta ctcctttttt gatttccaga
     2341 gccgatctgg ctgcgccgtt tcggtggtcg cgccttcggt aagacacagc gtagacagtc
     2401 acagccaagc gcgtgttacg agcggggggc tcgttattac gccggtttac tttcgccttt
     2461 cgtggtaaca cccagtaaac gtttccgctg tgattgcaat gtggaggccc cgcgcaggcg
     2521 ttaaactgcg tcgcatggct actcaaatac ttgtcgtcga cgacgacgct gaactgcgcg
     2581 acctcctgcg cgactacctg gtccggcaag gcatcgaggt atcggtgctg catgacgcgg
     2641 gcacgctcga acggcgcctc gaacgcgagc gcccggacct gatcgtgctc gacctgatga
     2701 tgccgggtgt ggacggactg accgcgttgc gcaagctccg cgcgtcgggt gacgacatcc
     2761 cggtgatcat gctgacggcg cgcgcggacg acgtggatcg catcgtcgga ttggaactcg
     2821 gcgctgacga ctatctcggc aaaccgttca atccgcgcga actgctggcg cgcgtgcagg
     2881 cggtgttgcg ccggcgccgg acgattccgt cggcggcgcc cgagcagcgc gaaccgtttt
     2941 cattcgggcg tttccggctc gacttccagt cgcgcacgct tcatcaggac gaaacgccgc
     3001 tcacgctgtc gggcagcgag ttcgcattgc tgaaaatttt cgtcaatcac cccatgcgca
     3061 cgctgacgcg cgagcgcctg ctcgaactgc tgcacggtcc ggaatacgac ggcacggacc
     3121 ggggtatcga cgtgcaggtg tggcgtctgc gccggatcct cgaaaccgac ccgtctacgc
     3181 cgcgctttat ccagactgtg cgcggacggg gttatgtgtt cgtgccggat ggcgagcaaa
     3241 atgcgtcggc ccattgattc actgttcggc cggctggttg tcctggtcat tggcgtgctc
     3301 gtgttgtcgc acgtcgcctg gttcacggtc atccggctcg agcgggatca gacgcaaact
     3361 cgctacgcgg tagaagaggc cgcgttcctg gtcgacgccg tgcgccagca catcgcgaat
     3421 tcgccagatc agccgctgcc gtcgagcgtg cgcgtggtcg aacccaacag tcccgacgtt
     3481 cccaaaccct tcaccgacgc cgataccagc cgcgtgccgc cgccatttgg gcggtttatc
     3541 gacgacttgc gggatcgttt accggacggc accgacgttc gcatcggcga gccgggcggc
     3601 ccgccgcgcc tgtgggtgcg aggcgtgaag gacgcgaact ggattgtcgt gccggttcag
     3661 ccgttgcgtc cgccgcgttc gcgcgaccgg atgctgctct ggctcgcgat tattttttcc
     3721 acggcggtga tggcggcgct ctttgcggcg tggcaattac agacgccgtt gcgttcgctg
     3781 gcgcaggcgg tcggccgttt tggccggggt gaaccgactc cgccggtacc ggaacggggt
     3841 ccgcgcgagc tgcggcagtt gacccacggg ttcaaccaga tggtgcgcga agtggagcag
     3901 acggaaa
//
LOCUS       DATGBK010001152         2109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_268852, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001152 DATGBK010000000
VERSION     DATGBK010001152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268852"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..602)
                     /gene="tpiA"
                     /locus_tag="VKJ77_16100"
     CDS             complement(<1..602)
                     /gene="tpiA"
                     /locus_tag="VKJ77_16100"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006415555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HMC46843.1"
                     /translation="MPKEQAKRAKLVVGNWKMHGRLAENAVLMQAVAAGAATLQKGVR
                     TAVCVPAPYLAQAQALLGGSVVAWGVQDVSAHTQGAYTGEVAAGMAADFEATFAIVGH
                     SERRAYHGEHSDLVAVKAQRALEAGLTPIVCVGETLEQRDNGLTEQVVGTQLEAVLLV
                     LSEAQAVKIVVAYEPVWAIGTGKSATTAQAQQVHAFLRAQL"
     gene            complement(776..1792)
                     /locus_tag="VKJ77_16105"
     CDS             complement(776..1792)
                     /locus_tag="VKJ77_16105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HMC46844.1"
                     /translation="MKAIEITEFGSPEVLKLGERPMPEPKAGEVLIKVAASGVNRPDV
                     FQRKGGYAPPPGASDLPGLEVAGEIVRGDFDPKHNPFGLKAGDRVCALLAGGGYAEYA
                     CAPLDQCLPVPKGLTDIEAASLPETFFTVWSNVFERAHLGKGENGAEETLLIQGGSSG
                     IGVTAIQIAKALGHRVFVTAGNDEKCQACEKLGAERAINYNTEDFVDVVKSLTNDRGV
                     DVILDMVAGDYLPRELKALADGGRVVVIATLGGSKAEINLNEVLRRRLVITGSTLRPR
                     PVAFKGRVAVQLKAQVWPEIEAGRIKPVIHQVFPADQAAAAHALMEGSTHIGKIMLDW
                     SQVA"
BASE COUNT          407 a          748 c          537 g          417 t
ORIGIN      
        1 agttgcgcgc gcaggaatgc gtgaacctgt tgcgcctgcg ccgtcgtcgc gctttttccc
       61 gtgccgatcg cccagaccgg ctcgtacgcc acgacaatct tcaccgcttg ggcttcgctc
      121 agcaccagca acaccgcttc cagttgcgtg ccgaccactt gttctgtcaa accgttgtca
      181 cgctgttcca gcgtttcgcc cacacacacg ataggcgtca acccggcttc cagcgctcgc
      241 tgcgccttca ccgcgaccag gtccgaatgc tcgccatgat aggcgcgccg ctccgagtga
      301 ccaacgatcg cgaatgttgc ctcaaaatcc gccgccatgc ctgccgcgac ttcgccggta
      361 taagcgccct gcgtgtgggc tgacacgtcc tgaacacccc acgcgaccac cgatccaccc
      421 agcagcgcct gcgcctgcgc gagatacggt gcgggcacgc aaaccgctgt acgcacaccc
      481 ttctgcaagg tcgcggcgcc ggcggccact gcctgcatca agaccgcgtt ctcagccaga
      541 cggccatgca tcttccagtt accgaccacc agctttgcgc gtttggcttg ttctttcggc
      601 atttgtctcg tcgtagcagc gaggctgccg atcattgaaa tagaaaaaat ggaactttcg
      661 gacgcaacgc ttcagcacaa catgcgattt tactgtgccc ggcggaaatc ggtcaaacaa
      721 cgcggtcaaa ctacgaaacc tgatctgccg ctcatttcaa ctccgcgagc cggaatcagg
      781 cgacctgact ccagtccagc atgatcttgc caatgtgcgt actgccttcc atcaacgcgt
      841 gagcagcggc ggcctgatcg gcggggaaaa cctggtgaat gacaggcttg atccgtcccg
      901 cttcaatttc cggccacacc tgcgccttaa gttgcaccgc gaccctgccc ttgaacgcga
      961 ccgggcgcgg ccgcaatgtg gaaccggtga tgaccagacg gcggcgcagc acttcgttga
     1021 ggttgatctc ggccttcgaa ccacccagcg tcgcgatcac cacgacccgg ccaccgtcgg
     1081 ccagcgcctt gagctcgcgc ggaagataat cgccggcgac catgtcgagg atcacatcca
     1141 cgccacggtc gttcgtcagc gacttcacca cgtcaacgaa atcttccgtg ttgtagttga
     1201 tcgcgcgttc cgcgcccagc ttttcgcacg cctggcactt ctcgtcattc ccggccgtca
     1261 cgaacacgcg atgccccagc gcctttgcaa tctgaatagc cgtcacgccg ataccgctcg
     1321 atccgccctg gatcagcagc gtttcttcgg cgccgttctc gcccttgccc agatgcgcgc
     1381 gttcgaacac gttgctccag accgtaaaaa acgtttccgg cagcgacgcc gcctcgatgt
     1441 ccgtcaaccc cttcggcacc ggcaggcatt gatcgagcgg cgcgcacgcg tattcagcgt
     1501 aaccgccgcc cgcgagcagg gcgcacacgc ggtcccctgc tttcaagccg aacggattgt
     1561 gcttcgggtc aaagtcaccg cgcacgatct cacccgccac ttccagtcct ggcagatccg
     1621 atgcacccgg cggcggcgca taaccgccct tgcgctggaa cacgtccgga cgattcacgc
     1681 ccgatgccgc gaccttgatc agcacttcgc cggccttcgg ctccggcatc gggcgctcgc
     1741 ccagcttcaa tacctcgggc gagccgaact cggtgatttc gatggctttc atctgcttat
     1801 tcccctcaag tcacactcgc gtatcaccga tgcataaccc catggcattg cgggctcact
     1861 cggacgaaac ttcaaccgaa acccgcaata acatcgaatc acatttgaac cttcatcttc
     1921 caccgacaaa ttcaaaaact gccggcacgc aaacgtcacg cgccggccat cccgaactta
     1981 ccgcattact gctgtggcgg ctggatcggt tcgataggcg cgccgccttc gttcagcaaa
     2041 gcctttgctg acaaacgcac acgacccttt tcgtctgtct gaatgacctt gaccttcacg
     2101 atctggcct
//
LOCUS       DATGBK010001153         3441 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_314690, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001153 DATGBK010000000
VERSION     DATGBK010001153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3441
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314690"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..381)
                     /locus_tag="VKJ77_16110"
     CDS             complement(<1..381)
                     /locus_tag="VKJ77_16110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC46845.1"
                     /translation="MTTLLEINGLNAWYGASHVLHGVSLRIGEGEIVALAGRNGSGRS
                     TLAKALMGLVHAQGVANFRGVPILGKRPYAIARMGVGYVPEERDVFPTLSVRENLQLG
                     TKRGGSRFTINDAEQLFPVLQERAA"
     gene            complement(378..1118)
                     /locus_tag="VKJ77_16115"
     CDS             complement(378..1118)
                     /locus_tag="VKJ77_16115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46846.1"
                     /translation="MNTALELKQITKRFDATQILRGVDLSVRQGERHALIGPNGAGKS
                     TLFDLIAGRTQPTSGHIALNGVDVTGMPAHQLGRKGLARSFQTTSVFTGLTVHDNVRC
                     AVLGSRAAAWKNRWFRSTVIDEKAHRVMKAIGLADRSDALATSLSYAESRSLDLGLAL
                     ATGASVLLLDEPTAGMNRAEAARALALIRETTQGKTLLIVEHDMEAVFALADRISVLV
                     QGRIIATGTPAEIAAHPVVRAAYLGETP"
     gene            complement(1115..2290)
                     /locus_tag="VKJ77_16120"
     CDS             complement(1115..2290)
                     /locus_tag="VKJ77_16120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC46847.1"
                     /translation="MLNAPLSLRQALPWLLLVAGLALPPIFTSQSWLLAYLAQTATMI
                     VFALSFNLLLGETGLLSFGHAMYAGLGAFAAAQLFNRFAVPLPLLPLVGGLAAALVGV
                     VFGFFSTRRAGTTFAMITLGIGELVAAGVSLVPGWFGGEGGISIDRASGPVVFGLNFG
                     PSIQAYILIAGWCVLACIAMSVFSRTPFVRVANAVRDNPVRAAAIGFDPRRVRFAMVI
                     VAAFFAGVAGGLGLINVELASAEGVGLARSGSVLIAAVIGGTATFFGPVLGAVILTFF
                     SVVVASVSPAWVAYLGLFFVWVVVVAPKGLAGFIAARSRESYLAIAFASCAVGAWLLA
                     ITIAVELAYALQFDSHGDGLAHIAGFLLSARHAAPWCFAFFTALIAVLFTRQARSAR"
     gene            complement(2283..3236)
                     /locus_tag="VKJ77_16125"
     CDS             complement(2283..3236)
                     /locus_tag="VKJ77_16125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC46848.1"
                     /translation="MTSFVQWFAINLLNGVSVGLLLFMLSAGLTLIFSMMGVLNFAHA
                     SFYMLGAYVGYALAAHGGFWFALVVSPLLVGALGGLFERFLLRRIETRGALPELLLTF
                     GAAYLIAEVVKLVWGLVPINAVVPAGLDGPLFTLYGAAFPRYRAFMMSVSLAMLLALY
                     AVLRVSRIGLVVRAALTHAATVETLGHNVPRVFALVFATGTALAALAGVIGAPLFVIE
                     PSMAENIGPIVFVVVVIGGLGSVGGALVASLLIGCVQTFAVGTTLSLGGIAQLVGAVL
                     PPAWASLSVAQIAPLLPYVLLVAMLALRPRGLFGQRGDDDA"
     gene            complement(3248..>3441)
                     /locus_tag="VKJ77_16130"
     CDS             complement(3248..>3441)
                     /locus_tag="VKJ77_16130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HMC46849.1"
                     /translation="LRVARIGSTSVRYEVGIFSAGSEQPAAQGYFVHVYVDRDARRPV
                     ALPETLVAALKPLVNVVTG"
BASE COUNT          849 a         1129 c          962 g          501 t
ORIGIN      
        1 ggccgcgcgt tcctgtagca cgggaaaaag ttgctccgcg tcgttgatgg tgaaacgtga
       61 tcccccccgc ttcgtgccga gctgcagatt ttcgcgcacg cttagtgttg ggaaaacatc
      121 gcgttcttcg ggcacgtagc ccacgcccat ccgagcgatt gcataaggac gtttccccag
      181 gatcggtacc ccgcgaaagt tcgccacccc ttgcgcgtgc accagcccca tcagcgcttt
      241 ggcgagcgtc gaacgtcccg aaccgttgcg tcctgccaag gctacgatct ctccttcgcc
      301 gatacgcaaa ctcacgccgt gcagcacatg actcgcgccg taccatgcgt tcagaccatt
      361 aatttcaagt agtgtcgtca tggcgtttcg ccgagatacg cggcgcgaac caccgggtgc
      421 gctgcaattt cagcgggcgt tcccgtcgcg ataattcggc cttgcacaag cactgaaata
      481 cgatcggcga gtgcaaacac cgcttccata tcgtgctcca cgatcagcaa tgtcttgccc
      541 tgcgttgtct cgcgaatcaa cgcgagtgca cgagcggctt ccgcgcgatt catgcctgcg
      601 gtgggttcat cgagcaacag cacggacgcg cccgtggcaa gcgccaggcc cagatcgaga
      661 gaacgtgatt cggcgtagct gaggctggtg gcgagtgcat cgctacgatc ggcaagaccg
      721 atggccttca tgacccgatg cgctttttca tcgataacgg tcgaacggaa ccatcgattt
      781 ttccatgcgg ccgcacgaga accgagcacc gcgcaacgga cgttatcgtg gacagttaaa
      841 cccgtaaaca cgctggtggt ctggaagctg cgcgcgagac ccttgcgtcc caactgatga
      901 gccggcattc ccgtcacgtc gacgccgttc aacgcgatgt ggccgctcgt cggttgcgtg
      961 cgccccgcaa tcaggtcgaa caaagtggac ttgccggcgc cattgggacc gatcaacgca
     1021 tgacgctcgc cttggcgaac gctcagatcg acgccgcgaa ggatctgcgt cgcatcgaaa
     1081 cgcttcgtga tctgcttgag ttcgagcgcg gtgttcatcg tgcgctccgg gcttgtctgg
     1141 tgaagagaac agcaatcaaa gcggtgaaga acgcgaagca ccagggagcc gcatgccggg
     1201 cactgagaag gaaacccgcg atgtgcgcaa ggccgtcgcc atgactatcg aattgcagcg
     1261 cgtaggcgag ttccacagcg atggtgatcg ccagcagcca cgcgccaaca gcgcacgatg
     1321 caaacgcgat agccaagtaa ctttcacgtg atcgtgcggc tataaacccc gccaggccct
     1381 tgggtgccac caccacgacc cacacaaaaa acagcccaag ataggctacc cacgccggcg
     1441 atacactcgc caccaccacg ctgaagaacg tcagtatcac ggctcccaaa acgggcccga
     1501 agaacgttgc agtcccaccg atcaccgcag cgatcaacac gcttcccgag cgcgcgagcc
     1561 ctactccttc cgccgatgcc agctccacat tgatcagacc cagcccaccc gccacgcccg
     1621 caaaaaatgc cgctacgatc accattgcga agcgcacgcg acgcggatcg aagccgatgg
     1681 ccgcggcacg cacggggtta tcgcggaccg cattcgccac acgcacgaac ggcgtgcgcg
     1741 agaaaacgga catcgcgata cacgcgagca cgcaccatcc ggcgataagg atatacgctt
     1801 ggatcgaggg tccgaagttc aagccgaaga cgacaggacc actcgcacga tcgatggaaa
     1861 tgccgccttc tccgccaaac caaccgggca cgagcgatac acccgccgca accagttcgc
     1921 caatcccgag cgtgatcatc gcgaaagtcg tgccagcgcg acgcgttgaa aagaagccaa
     1981 acacgacacc cacgagcgct gcagcgagac caccgaccaa cggcaacaaa ggcagaggca
     2041 ctgcgaatcg attgaaaagt tgcgcagcgg cgaacgcgcc gagacccgcg tacatagcgt
     2101 gaccaaaaga cagcaaccct gtctcgccga gcagcagatt gaacgagagc gcgaacacga
     2161 tcatggtcgc agtttgcgcg agataggcga gcaaccagct ctgcgatgtg aagatgggtg
     2221 gtaacgcaag accggccacg agcagcagcc atggaagcgc ctgacgcaaa gagagaggtg
     2281 cgttaagcat cgtcgtcgcc tcgctggcca aacagtccgc gaggacgcag cgcgagcatc
     2341 gcgacaagca gtacatacgg cagcaacggc gcgatctgcg cgacgctcaa cgaagcccac
     2401 gcaggcggca atacagcgcc aacaagctgg gcaatgccac caagcgacaa cgtagtcccg
     2461 acggcaaacg tctgcacgca gccgatcaaa agcgatgcca ccagcgcgcc gcccaccgac
     2521 cccagcccac cgattacaac gacaacaaag acgatggggc cgatgttctc ggccatcgaa
     2581 ggttcgatca cgaacagcgg cgccccgatc acgccggcca gcgcagcgag cgcggtaccg
     2641 gtcgcgaaca ccagcgcaaa tacacgagga acgttatgac caagcgtctc gacagtcgcc
     2701 gcgtgcgtga gcgcagctct caccacaagc cctatccgcg agacccgcag cacggcatac
     2761 aaagccagca acatagccag cgatacactc atcatgaatg cgcgataccg cgggaaagcg
     2821 gcgccgtaga gcgtgaacaa cgggccatcg agacctgcag gaacaacggc gttgatgggc
     2881 accagacccc agacaagctt cacgacttca gcgatcaagt aagccgcacc gaacgtcagc
     2941 agaagctcgg gaagtgcgcc gcgtgtttca atccggcgca ataggaaacg ctcgaacaaa
     3001 ccgccgagcg cgccaaccag caaaggcgaa acaaccaacg caaaccagaa gcccccatgc
     3061 gccgcgagcg cgtaacccac atacgcgccg agcatataaa agctcgcgtg agcgaagttg
     3121 agcaccccca tcatgctgaa gatcagcgtc aatcctgccg acagcatgaa cagcagcaac
     3181 ccgacgctca ctccattcag aaggttgatc gcgaaccact gaacgaacga ggtcacgttg
     3241 cgcgaaccta cccggtgacg acgttaacaa gcggcttgag cgccgcgacg agcgtctcgg
     3301 gcaaagcaac cggacggcgc gcatcgcgat cgacatagac gtgcacaaaa tacccttgcg
     3361 ccgcgggttg ctccgaccct gcgctgaaga tacccacttc atatcgcacg ctcgtggagc
     3421 cgatccgcgc cacgcgcaga c
//
LOCUS       DATGBK010001154         1650 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_37649, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001154 DATGBK010000000
VERSION     DATGBK010001154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37649"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            478..1191
                     /gene="tolQ"
                     /locus_tag="VKJ77_16135"
     CDS             478..1191
                     /gene="tolQ"
                     /locus_tag="VKJ77_16135"
                     /inference="COORDINATES: protein motif:HMM:TIGR02796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HMC46850.1"
                     /translation="MNPADVAQTVLPLSSSDVSIFALFWQAHWIVKSVMLGLLGCSVW
                     VWAIAIDKTVLYTRSKRAMDRFEQAFWSGQSLEELYRSLSSKPTHSMAALFVAAMREW
                     KRSFEGQARSFAGLQMRIEKVMEVTIAREVERLERRLLVLATVGSAGPFIGLFGTVWG
                     IMTSFQSIAASKNTSLAVVAPGIAEALFATAIGLVAAIPATIFYNKFASEVNKQAQRL
                     EGFADEFAAILSRQIDERG"
     gene            1254..>1650
                     /locus_tag="VKJ77_16140"
     CDS             1254..>1650
                     /locus_tag="VKJ77_16140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HMC46851.1"
                     /translation="MAANAGTPVIGRRKRHRQKVMSEINVTPMVDVMLVLLIIFMVSA
                     PLLTVGVPIDLPQSQAKSLDQDKEPLTLSVNDKGQVFLQNAEISVDDLIPKLQAVAEA
                     RGGTEARVYVRGDKNVGYGTMMQVMGRLSA"
BASE COUNT          315 a          473 c          536 g          326 t
ORIGIN      
        1 cgcccgcacc acctgccgcg cattcatatc gacctgcatg gcgccgccag tcttgccctc
       61 gctcatccct cgcccccgac tcgtccgcgc agcgaatata atccaaaggc gttgtcgcat
      121 gaatcgtccg cgtttttggg gcctcgatcc catcgcaggc ggcctggccg gtaacgaagc
      181 cttaacctca atcagcgcca gttaatgact ggttagaccg gccctgcgcc ctagtttggc
      241 cagtttcgcg cgattttgtc ccgtccattg gtggacggtg cgaagtcatt gcgaaatctc
      301 gggttcgagt cggaacgcga aagcaaaact ggcgcgcaag accgccgcgt atgcgtggtg
      361 caacgacaaa attgcgtgag tgaattgtgt gacgcaagtt gcgtttatgc gacgaccatt
      421 tgccgcaccg gtgacgatcg gcgttgcgac caaaatacgg atcaaggaat taagcgcatg
      481 aatccagccg atgtggcgca gaccgtgttg ccgctcagtt cctcggacgt gtcgatcttc
      541 gctctgtttt ggcaggcgca ttggatcgtc aagtcggtga tgctcggatt gctcggctgc
      601 tcggtgtggg tgtgggcgat cgcgatcgac aagaccgtgc tctatacgcg cagcaagcgc
      661 gccatggacc gtttcgagca ggcattctgg tccggccagt cgctggagga gctctaccgc
      721 tcgctctcct cgaagccgac ccactcgatg gcggcgctgt tcgtagcggc gatgcgggaa
      781 tggaagcgca gcttcgaggg ccaggcgcgc tcgttcgcgg gcttgcagat gcggatcgag
      841 aaggtgatgg aggtgaccat cgcccgcgaa gtcgagcgtc tggaacgccg gctgctggtg
      901 ctggcgaccg tcggctcggc cggccccttt atcggcctgt tcggcacggt ctggggcatc
      961 atgaccagct tccagtcgat cgccgcctcg aagaatacgt cattggcagt ggtggcaccg
     1021 ggcattgcgg aagcgctatt tgcgaccgca atcggccttg tcgccgccat accggcgact
     1081 attttctata acaagttcgc ttccgaggtg aacaagcagg cgcagcgcct ggaagggttc
     1141 gccgacgaat ttgccgccat tctgtcgcgg cagatcgacg agcgcgggta gcgcatgatc
     1201 ccgaaaagtg ggaaccggtt ttcgggaagg atcatgcgca ggggaagata gtcatggcag
     1261 ccaatgccgg cacgccggtc atcggacgca ggaagcgtca tcgccaaaag gtgatgagcg
     1321 agatcaacgt cacgccgatg gtggacgtga tgctggtgct gctgatcatt ttcatggtgt
     1381 cggcgccgct gctcacggtc ggagtgccga tcgacctgcc gcaaagccag gccaagagcc
     1441 tcgaccagga caaggagccg ctcacgctgt cggtcaacga caagggccag gttttcctgc
     1501 aaaatgccga aattagcgtg gacgatctga tcccgaagct gcaggcggtg gccgaggcgc
     1561 gcggcggcac cgaagcgcgc gtctatgtgc gcggcgacaa gaatgtgggt tatgggacca
     1621 tgatgcaggt gatgggacgg ctgtcggcgg
//
LOCUS       DATGBK010001155         1535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_60575, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001155 DATGBK010000000
VERSION     DATGBK010001155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60575"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..649)
                     /locus_tag="VKJ77_16145"
     CDS             complement(65..649)
                     /locus_tag="VKJ77_16145"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HMC46852.1"
                     /translation="MNHDTYDDSYIREILNGVKTIAMVGASPVNVRPSYFAFKYLAQR
                     GYDMIPVNPGQVGKSLVGKPFVASLRDIDRPIDMVDIFRNSEAALPLVEEALALNPLP
                     KVIWMQLGVRNDEAAAKAEAAGLKVVMNRCPKIEYGRLSSEISWMGVNSRTLSSKRAP
                     VPTQGMRLSLNRVSVGGGGTNAADRAARNKNDPA"
     gene            complement(738..1514)
                     /locus_tag="VKJ77_16150"
     CDS             complement(738..1514)
                     /locus_tag="VKJ77_16150"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013744320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HMC46853.1"
                     /translation="MRETIDGIAVLTLNRPEARNSLSEALIAELHAAIDDIRNDAAVR
                     AVVIAASGKAFCSGHDLKELTARRADADGGRAFFAQMMTNCSAMMQSIVQLPKPVIAA
                     VQGVATAAGCQLVATCDLAVASEQAAFATPGVDIGLFCSTPMVALSRNIGRKQAMEML
                     LTGEMVPAQDAKQMGLINRVVPAGTERDAALALAQKVARKSAHTVKIGKEAFYRQAEM
                     NLADAYRFASQVMTENMMAHDAEEGICAFIEKREPTWQDR"
BASE COUNT          277 a          458 c          476 g          324 t
ORIGIN      
        1 ggttcaaaac gcctgtcgtt tgcgcgccga agcgtgtgaa atgaaattct gccggaaggc
       61 cgcttcaggc aggatcgttc ttgttgcggg cggcgcgatc cgcggcattg gtaccgccgc
      121 caccgacgct gacacggttc agcgacaaac gcatgccctg ggtcgggact ggtgcgcgct
      181 tggaactcag cgtgcgcgaa ttgacgccca tccatgaaat ttccgacgac aaccggccgt
      241 attcgatctt cgggcagcgg ttcatgacaa ccttgagacc ggcggcctcg gccttggcgg
      301 cggcctcgtc gttgcggacg ccgagttgca tccagatcac cttgggcagc ggattcagcg
      361 ccagcgcttc ttccaccagc ggcagcgcgg cctccgagtt gcggaagatg tcgaccatgt
      421 cgatcggacg atcgatatcg cgcagcgatg ccacgaacgg tttgccgacg agacttttgc
      481 cgacctgacc gggattgacc gggatcatgt cgtagccgcg ctgcgcaaga tacttgaaag
      541 caaaatagct gggcctgaca ttcacgggcg aggcgccgac catcgcgatg gttttcaccc
      601 cgttgagaat ttcgcggatg taactgtcgt cgtaggtgtc gtgattcatg ctgagatgcg
      661 accgttcggg taaggtgtcg ctgcacttac aacgacggag agtgtattgc tgcttatagc
      721 gcagcgttcg tcgtattcta gcgatcctgc caggtcggtt cgcgcttttc gatgaaggcg
      781 caaatgcctt cttctgcgtc gtgcgccatc atgttttcgg tcatcacctg agacgcaaag
      841 cgataggcat ccgcaaggtt catttcggcc tggcgataga acgcttcctt gccgatcttg
      901 acggtatgcg ccgatttgcg tgcgaccttt tgtgccagtg cgagagccgc gtcacgctcg
      961 gtaccggcag ggaccacgcg gttgatcagg cccatctgtt tcgcgtcctg tgccggcacc
     1021 atctcgccgg tcagcaacat ttccatcgct tgcttgcggc cgatgttgcg cgacagcgcc
     1081 accatcggcg tggagcagaa caagccgatg tcgacacccg gtgtggcgaa ggctgcttgc
     1141 tcggacgcca ccgcaagatc gcaggtcgcg accagctgac agccggcggc cgtcgcgacg
     1201 ccctgaactg cggcgatcac cggtttcggc aattgcacga tgctctgcat catggcgctg
     1261 cagttcgtca tcatctgcgc aaagaaagcg cggccgccgt cggcatccgc acggcgtgca
     1321 gtcagttctt tcaggtcgtg gcccgagcag aatgccttgc cgctggccgc gatcacgacc
     1381 gcgcgcaccg ccgcgtcgtt acgaatgtcg tcgatggcgg catggagttc tgcgatcaac
     1441 gcctcggaga gcgaattgcg tgcctccggc cggttcaacg tcagtactgc aatgccgtcg
     1501 atggtttcgc gcagaagtac gggaaattgc ggtgt
//
LOCUS       DATGBK010001156         2242 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_152512, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001156 DATGBK010000000
VERSION     DATGBK010001156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152512"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(53..>2242)
                     /locus_tag="VKJ77_16155"
     CDS             complement(53..>2242)
                     /locus_tag="VKJ77_16155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006401985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3418 domain-containing protein"
                     /protein_id="HMC46854.1"
                     /translation="DVHSQLLTVVREHGWRLNESEATFEQIHLALLTGLLGNVGLKAD
                     DEPYYLGARGIKFYLWPGSALLKKAGRWVVAGELVETSRLYARCIAKIEPEWLEQVGA
                     HLLRKSISEPHWEKKAAQVAAFERATLHGLTVYARRRVSFGKQDPERARELFIRGALV
                     DGEFETKLPFFAHNRKLLADIEQLEHKSRRQDVLVDDELIFGFYDSLVPKGIHSGAAF
                     ERWYRDEERKAGASRLLFLSRDDLMRHEAAGITTDLFPKRMTMAGIEMTLTYHFEPGS
                     PRDGVTLTVPLFGLNQVDARRSEWLVRGMLKEKIQLLLKSLPQKLRRHLVPLPEFSAG
                     VVERYSGKTFGAGGLLEALIADIREQTQIAMKPSDFKLETLPAHLFMNFKVIDEHGRQ
                     LAMGRNLAQLRTELGGQAQQHFQKLAAGATLDMGGDAAAPVTRNASVSESSSTALYEN
                     LTTWDFGKLPELLEIRRRGQTLFGYPALVDRGTHCDVEVFDSPEEAARIHRAGLRRLF
                     ALQLREPIRYLERNLGGLREMSLQYMALGSQEELGSQIIETALDRACLQDPLPDNDTD
                     FHARRDQGKSRLTLLAQEIARLAGQILTEYATVSKKLTQVKSFGAPYADMVGQLNALI
                     GKRFIIDTPYSQLSHFPRYLNAIALRIDKLKADAVRDARLSAEIAPLLQNYQRAIAQR
                     GGVADARLSEYRWLLEELRVSLFAQELRTPMPISVKRLYKVWESMQR"
BASE COUNT          478 a          721 c          581 g          462 t
ORIGIN      
        1 cgctgaagcg cgagccggtt attcaccgcg tctcgcgctt ttttcacatg cgttatcgtt
       61 gcatcgattc ccatactttg tacaaacgct tgaccgaaat tggcatgggt gtccgaagtt
      121 cttgcgcaaa tagcgacaca cgcaactctt ccagcaacca tctgtattcg ctcaatcgcg
      181 catccgccac cccgccgcgt tgcgcaatcg cccgctgata gttttgcagc agcggcgcaa
      241 tctccgccga caaccgcgcg tcccgcacag catccgcctt caacttgtcg atacgaagcg
      301 ctatcgcgtt cagatagcgc gggaagtggg acaactgcga gtaaggcgta tcgataataa
      361 agcgcttgcc aatcagcgcg tttaattgcc cgaccatatc cgcgtacggt gcgccgaacg
      421 atttgacctg cgtcagtttc ttcgagacgg ttgcgtactc cgtcaggatc tggccagcca
      481 gccgcgcaat ttcctgtgcc agcaacgtta gtcggctctt accctgatcg cgccgcgcat
      541 ggaaatccgt gtcgttatcg ggaagcggat cttgcaggca cgcacgatcc aatgcggttt
      601 cgatgatctg gctacccaac tcttcctgtg aacccagtgc catgtattgc agcgacatct
      661 cacgcagtcc gcccagattg cgctcgagat accggattgg ctcacgcagt tgcaatgcga
      721 acagccggcg caaaccggcc cgatgaattc gtgccgcttc ttccggcgaa tcgaatactt
      781 caacgtcgca atgcgttccc cgatcgacca acgccggata gccgaacagc gtctgaccgc
      841 gccgccgaat ttcaagcaat tcgggcaact ttccgaaatc ccaggtggtg aggttttcgt
      901 agagcgcggt gctcgaagac tcggacaccg atgcgtttcg cgtcaccggc gccgccgcgt
      961 caccacccat gtccagcgtc gcgcccgcgg cgagcttctg gaaatgctgc tgtgcctgac
     1021 cgcccagttc tgtccgcaac tgcgcaaggt tacggcccat cgccagttgc cggccatgtt
     1081 cgtcaatgac cttgaagttc atgaacaaat gcgccggcag cgtttcgagc ttgaagtccg
     1141 acggcttcat tgcgatttgc gtctgctcgc gaatatccgc aatcagcgct tcgagcaaac
     1201 cgcccgcgcc gaacgtctta ccgctgtacc gctcgaccac acccgcagaa aactcgggca
     1261 gcggcacaag atgccgccgc aatttctgcg gcaacgactt cagcagcaac tggatcttct
     1321 ccttcagcat gccgcgaacc agccattctg agcggcgggc atcgacttga ttcaggccga
     1381 acagcgggac ggtaagcgtc acgccatccc gcggagaacc gggctcgaaa tgataagtca
     1441 gcgtcatttc gatgccggcc atcgtcatcc gtttcgggaa cagatccgtc gtgatgccgg
     1501 ccgcttcgtg gcgcatcagg tcatcgcggg agaggaacaa caggcgcgac gcgcccgcct
     1561 tcctttcctc atcacgatac cagcgctcaa acgccgcgcc cgaatggatg cccttaggta
     1621 caagcgaatc gtagaaaccg aagatcaatt catcgtcgac gagcacatcc tgccgacgcg
     1681 acttgtgctc caactgctcg atatccgcga gcagcttgcg gttgtgcgcg aaaaacggca
     1741 gcttggtctc gaattcgccg tccacaagcg cgccacgaat aaacaactcg cgcgcccgct
     1801 ccggatcctg tttgccaaaa ctgacacgcc gacgtgcata gacagtcagg ccatgcagcg
     1861 ttgcgcgttc gaacgctgca acttgcgctg ctttcttttc ccaatgcggc tcagaaatcg
     1921 atttacgcag tagatgtgcg ccgacttgct caagccattc aggctcaatt ttcgcgatac
     1981 agcgtgcgta cagcctgctc gtttccacga gttcgccggc tacgacccag cgccccgctt
     2041 tctttaacag agccgaaccc ggccatagat aaaacttgat accgcgcgcg ccaaggtaat
     2101 acggctcgtc atcggccttg agacccacat tgccgagcag accggtcagc aatgcaagat
     2161 gaatctgctc aaacgtcgcc tcggattcgt tcagacgcca gccatgttcg cgcacgacgg
     2221 tcagcaattg cgaatgcaca tc
//
LOCUS       DATGBK010001157         1514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_13679, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001157 DATGBK010000000
VERSION     DATGBK010001157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13679"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VKJ77_16160"
     CDS             <1..392
                     /locus_tag="VKJ77_16160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012363082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HMC46855.1"
                     /translation="KMLNAVDSAKDATPAVLNETFGVLLRVLYPVVPHITFQLWQELG
                     YADLHGGLLDASWPKVDEAALEQAEIELVLQVNGKVRGTLTMAKDASREDIEKAAVAH
                     EMFEKFSEGRTPKKVVVVPGRLVNVVV"
     gene            485..1036
                     /gene="lptE"
                     /locus_tag="VKJ77_16165"
     CDS             485..1036
                     /gene="lptE"
                     /locus_tag="VKJ77_16165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004541250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HMC46856.1"
                     /translation="MSRRSILTLACSAVLLSACGFQLRGQQDYAFKRLAISGGTPEML
                     ARLQRVVEGGSDTVIVKVSEKPDAILSLAGGNGMKTLSLNAQGVVQEYELDYNLGYSM
                     VGADGTLLIPPSTISLNRAITYSDQFTLAKGIEAQTLYRDMQFDAVDQLTRRLAVVRS
                     LHPAPSEALPGIAPRAPLPVPPL"
     gene            1056..>1514
                     /gene="holA"
                     /locus_tag="VKJ77_16170"
     CDS             1056..>1514
                     /gene="holA"
                     /locus_tag="VKJ77_16170"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HMC46857.1"
                     /translation="MQLRLDALDAHLAKGLKGLYVVYGDEHLLAQEACDKIRASARAQ
                     GFTDRSVFVVDRYFDWSSLLGASQSMSLFGDRQLVELRIPTGKPGKEGGEALKTLAAS
                     DNPDTLTLITLPRLDAATQKSAWFTALSGPGVMMKIDPVERAQLPMWIGQR"
BASE COUNT          299 a          422 c          499 g          294 t
ORIGIN      
        1 tgaagatgct gaacgctgta gatagcgcga aggatgcaac gcccgctgtt ctcaacgaga
       61 ccttcggcgt gttgctgcgc gttctgtatc cggtcgtgcc gcacatcaca ttccagttgt
      121 ggcaggaact cggttacgcc gatctgcacg gcggtttgct cgatgcgtcc tggccgaaag
      181 tggacgaagc cgcgctcgaa caggctgaaa ttgagctcgt gctgcaggtc aacggcaagg
      241 tgcgcggaac gcttaccatg gcgaaagatg cgtcgcgcga agacatcgaa aaggcggcgg
      301 tcgcgcatga gatgttcgag aagttttcgg aagggcgcac gccgaagaaa gtcgtcgtgg
      361 tgccgggccg gttggtgaac gtggtcgtat gagccggaaa tcgcgcgcca tgaaaatcct
      421 ggaggacgtt gtgagcggga aagctgtcag cttgagttcg accaacacga agacgaagcg
      481 cgcgatcagc cggcgttcaa tcctgacgct ggcgtgcagc gcggtgctgc tgtcggcatg
      541 cggtttccag ttgcgcgggc agcaggacta cgcgttcaag cgcctcgcca ttagcggcgg
      601 cacgccggaa atgcttgcgc gcctccagcg tgtagtggaa ggcggcagcg acaccgtgat
      661 cgtcaaggtg tcggaaaaac ccgacgctat cctgtcactg gctggcggga atggcatgaa
      721 gaccttgagt ttgaatgcgc aaggtgttgt gcaggaatac gaactcgatt acaacctggg
      781 ttattccatg gtcggtgctg acggcacctt gctgattccg ccgagtacca tctcgctgaa
      841 ccgtgcgatc acgtatagcg atcagttcac gctggcgaag ggtattgaag cgcagacgct
      901 gtatcgcgac atgcagttcg acgcagtgga ccagttgacg cgtcggcttg cagtcgtacg
      961 ttcgctgcat ccggcgccga gtgaggcgtt accgggcatt gcgccgcgtg cgccgttgcc
     1021 tgtgcccccg ctgtaagcgc ggaacatatc aaaacatgca acttcgactc gacgcgctcg
     1081 acgcgcacct cgcgaaaggg ctgaaaggct tgtacgtcgt ctatggcgac gagcatctgc
     1141 tcgcgcagga agcgtgcgac aagattcgcg cgagtgcgcg ggcgcagggt ttcacggatc
     1201 gctcggtgtt cgtggtcgac cgttatttcg actggagttc gttgttgggc gcgagccagt
     1261 cgatgtcgct cttcggcgac cgccaactgg tggagttgcg cattcccacc ggcaagcccg
     1321 gcaaggaagg gggtgaggcg ctgaaaacgt tggccgcctc cgataacccc gacaccctta
     1381 cgctcatcac cttgccacgg ctcgacgccg ccacgcagaa gtccgcatgg ttcacggcgc
     1441 tgagcggccc gggcgtgatg atgaagatcg atccggtaga gcgcgcccaa ctgcctatgt
     1501 ggatcggcca gcgt
//
LOCUS       DATGBK010001158         2115 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_268923, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001158 DATGBK010000000
VERSION     DATGBK010001158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268923"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1713)
                     /locus_tag="VKJ77_16175"
     CDS             complement(<1..1713)
                     /locus_tag="VKJ77_16175"
                     /EC_number="2.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019140989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate
                     synthase (UDP-forming) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HMC46858.1"
                     /translation="MRTSLITNTIQEPLQGFVNEGSRVKVLRFLNRITQDERLFALGF
                     CDLNRKLLYKTLAFPDKVNCSDPVSDPGSDKDAGHGRLVQLGRGLIHVAVNPVETEGT
                     PYGYLIMVHDMSFVQRRSEDTKKYVFYLFVGIGAIISLITVVIAELSWRGWVAGLKLL
                     IRGKRFGPTSNEAHMPELRPVARDLQALIRELESERRSRDESQINWSAETLRAILRDD
                     LKGDEILIVSNREPYIHLRNNERVEVRRPASGLVTALEPVMRACSGTWIAHGSGDADR
                     DAVDAHDHVMVPPDKPAYRIRRVWLTQEEEAGYYYGFSNEGLWPLCHIAHTRPTFRSS
                     DWSAYVEVNGKFAEAVVAEAKAEDPIILVQDYHFALLPRMLRARLPHATIITFWHIPW
                     PNAEAFGICPWREELLDGLLGSSILGFHTQFHCNNFLETVDRYVEARTDRETFTISYG
                     GEQTAVRRYPISIDWPLASKVMEKPVEECRADIRRKNGFAPDALLGVGVDRLDYTKGI
                     LERFIAVERLLELEPQWIGKFVFVQIAAPSRSSIDEYQNFDARVRALARRINKRFARG
                     GYEPI"
BASE COUNT          412 a          673 c          633 g          397 t
ORIGIN      
        1 aatcggctcg tagccgccgc gcgcaaagcg cttgttgatg cggcgcgcca gcgcgcgcac
       61 cctggcatcg aaattctggt attcatctat gctcgagcgc gacggcgccg caatctgcac
      121 gaacacgaac ttcccgatcc attgaggctc gagttccagc aggcgctcga ccgcgatgaa
      181 gcgctcgagt attcccttgg tatagtcgag ccggtccacg ccgaccccga gcagtgcgtc
      241 gggcgcaaac ccgttttttc ggcggatatc cgcccggcac tcctccaccg gtttctccat
      301 caccttcgac gccagcggcc aatcgatcga gatcggatag cggcgcacgg cggtttgctc
      361 gccgccgtag gaaatggtga acgtttcgcg gtcggtgcgt gcttcgacat agcggtcgac
      421 ggtctcgaga aagttgttgc agtgaaattg ggtgtgaaaa cccaagatac tgctgccgag
      481 cagcccgtcg agcagctcct cgcgccaggg gcagatcccg aacgcttccg cattgggcca
      541 ggggatgtgc cagaaggtga tgatggtggc atgcggcagg cgcgcgcgca acatccgcgg
      601 cagcagcgcg aaatggtaat cctgaaccag gatgatgggg tcttcggcct ttgcctccgc
      661 gacgaccgcc tctgcgaact taccattgac ctcgacgtag gcggaccagt cgctcgagcg
      721 aaacgtcggc cgcgtatggg cgatatggca cagcggccaa agcccctcgt tggaaaagcc
      781 gtagtaatag ccggcctcct cctcctgcgt gagccatacg cgccggatgc ggtaagcggg
      841 cttgtcgggc ggcaccatga cgtggtcgtg cgcgtcgacc gcgtcccggt ccgcgtcgcc
      901 gctgccgtgt gctatccacg ttcccgagca tgccctcatc accggctcga gcgctgtcac
      961 cagtccgctt gcgggccgcc ggacctcgac gcgctcgtta ttgcgcaaat gaatgtaggg
     1021 ctcgcggttc gatacgatca ggatctcgtc acccttgaga tcgtcgcgca aaatggcgcg
     1081 cagcgtttcg gccgaccagt tgatctggct ctcgtcgcgg cttcgtcgct cggattcgag
     1141 ttccctgatc agcgcctgca agtcccttgc cacgggtcgc agctccggca tatgcgcttc
     1201 gttggaagtc gggccgaagc gcttgccgcg gatcagcaat tttagacctg ccacccatcc
     1261 gcgccagctc aactccgcga tgaccacagt gatgagcgag ataatcgcgc cgatgccgac
     1321 gaacagatag aagacgtact tcttcgtgtc ctcgctgcgg cgctgaacga aactcatgtc
     1381 atgcaccatg atgagatagc cgtacggcgt gccctcggtt tcaacaggat taaccgcgac
     1441 gtgaatcagc ccgcgcccga gttggaccag ccggccgtgc cctgcgtcct tgtcgctccc
     1501 gggatcggag acggggtcgc tgcaattgac cttatcggga aaggcgagcg tcttgtaaag
     1561 cagtttccgg ttcaggtcgc agaagccgag cgcgaacagg cgctcatcct gggtaatgcg
     1621 attgagaaag cgcaacacct ttacccgcga accctcattt acgaatccct gcaacggttc
     1681 ctggatggta ttggtgatca aagaggtgcg catttccaga tccctgacga accacttcag
     1741 ggtgaactga tcgaccagcg gaactaccgc atacgcaatc gcggcgagcg cgagggcaag
     1801 cggtacgata aagcgaaatg aaagcctcaa tgcgggatct ccgtctgccc cgacagccga
     1861 tcgtcgacga ctgcgcctgg accgccagtt cgcattctgt cactttctga tcgcggcgaa
     1921 caactatcgc ttcgcgccgg cgcgtcgcgc ccggcggacc gtcccggccg ccttgccggc
     1981 aacgctcaag gtcgcgcttg ctcagggtga gagaaatagc gccagacacc tatggcgtac
     2041 atcagcccga acaccaccaa cgctgccgca gtcactgcaa acaagctgcc aagttcgagg
     2101 ccgaaggcgc gcgtc
//
LOCUS       DATGBK010001159         2550 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245250, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001159 DATGBK010000000
VERSION     DATGBK010001159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245250"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..938)
                     /locus_tag="VKJ77_16180"
     CDS             complement(<1..938)
                     /locus_tag="VKJ77_16180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46859.1"
                     /translation="MRRVKTDFATDWPGARRMVRIRVIVTGLTALFLLAGRPQRAQAE
                     ALTVAPLTFAIASNVLDKPAGETALQHLLNAIGQERNTSFIVYDGDLKGETEPCRDSL
                     YDTRQQIFDSSRKPVVLLPGGNDWASCGLAQAGSYDPVERLDFIRQLFFGDSRSLGQT
                     PMNVIRESDVARFRPFRENVRWQTDGVAFIGLNAPAPNNHYLTAGGRNGEFEDRSVAN
                     AFWLEHAVETARRSEMRAVVVILQGDPDFARYERRDRFAWLHFSRGDTSRDGFLELKR
                     SLVKAAELFRGPVIVIHTSDTPIPRGFRIDQPLRND"
     gene            complement(925..>2550)
                     /gene="mutS"
                     /locus_tag="VKJ77_16185"
     CDS             complement(925..>2550)
                     /gene="mutS"
                     /locus_tag="VKJ77_16185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HMC46860.1"
                     /translation="TASLDGLRAALRQISDIERITGRLALLSARPRDLSSLRDTFAAL
                     PQLRERLAAVKMNAASLERIDISLEPPPECLALLSRAIAPEPAALIRDGGVIARGYDA
                     DLDELRDISENCDQFLIDLETRERTRTGIANLRVEYNKVHGFYIEVTRGQTDKVPDDY
                     RRRQTLKNAERYITPELKTFEDKALSAQDRALARERLLYDALLQTLLPHIGDCQRVAA
                     ALAELDLLGAFAERARALDWIAPAFADDAGIDIEQGRHPVVEAQVEQFIANDCSLNIE
                     RKLLLITGPNMGGKSTFMRQTALIALLAYVGSYVPAKRACFGPIDRIFTRIGAADDLA
                     GGRSTFMVEMTEAAAILNDATPSSLVLMDEIGRGTSTFDGLALAWAIARHLLSHNGCH
                     TLFATHYFELTQLPAEFAQAANVHLSAVEHDHGIVFLHAVSEGPANQSYGLQVAQLAG
                     VPPAVIKAARKHLAHLEQQSIGHPSPQFDLFAAPVVEIVDAHEHDEPVEAQPHPALDR
                     LRAIDPNELRPRDALDLLYELHELASNAPDASR"
BASE COUNT          481 a          758 c          808 g          503 t
ORIGIN      
        1 ttgtcgttgc gcagtggctg gtcgatgcga aagcccctgg gtatcggcgt atccgacgtg
       61 tggatcacga tcacgggtcc gcgaaacagt tccgcggctt tgaccaggct gcgcttcagt
      121 tcgagaaaac catcgcgcga cgtatcgccg cgagaaaaat gcagccatgc gaaacgatcg
      181 cgacgctcgt aacgcgcgaa gtcggggtca ccctgcagga tcacgacgac cgcacgcatc
      241 tccgaacgtc gcgcggtttc aaccgcatgt tccagccaga atgcattggc gacggaacgg
      301 tcttcgaatt ctccattgcg cccacccgcg gtcagatagt gattgttcgg cgcgggcgcg
      361 ttcaagccaa tgaacgcaac accgtcggtt tgccatcgga cgttttcgcg gaatgggcga
      421 aagcgcgcga catcgctttc acggatcacg ttcataggcg tctgaccgag cgaccttgag
      481 tcgccaaaga acaactggcg gatgaaatcc agccgctcga ccggatcgta actgcctgcc
      541 tgcgcgagac cgcaagatgc ccagtcgttg ccgccgggta gcaggacgac tggtttgcgg
      601 gagctatcga agatttgctg acgcgtgtcg tagagcgaat ccctgcacgg ttccgtttcg
      661 cctttgaggt cgccgtcgta gacgatgaac gacgtgttcc gttcttgtcc gatggcgttg
      721 agcagatgct ggagcgcagt ttcgccggcg ggcttgtcga gtacattcga agcaatcgcg
      781 aatgtcagcg gcgcgactgt cagcgcttca gcttgggcgc gctgcggtct tccggccagc
      841 aggaagaggg cggttaagcc agtaacgatg acgcggatgc gcaccatgcg tcgcgcgccc
      901 ggccagtcgg tggcaaagtc cgttttaacg cgacgcatcc ggagcgttcg acgccagctc
      961 atgtagttcg tagagcagat cgagtgcgtc gcgtgggcgc aattcgttcg gatcgattgc
     1021 gcgcagccgg tcgagcgcgg ggtgcggctg cgcttcgacc ggttcgtcat gttcgtgggc
     1081 gtcaactatt tccacaacag gtgctgcgaa cagatcgaat tgcggcgacg ggtgtccgat
     1141 tgactgctgc tccagatgcg ccaggtgttt tcttgcagcc ttgatgacag ccggtggcac
     1201 gcctgccagt tgcgcgacct gcaagccgta gctctgattc gccggacctt cgctcaccgc
     1261 gtgcaggaac acgatgccgt ggtcatgttc gaccgccgac aaatgcacgt ttgctgcttg
     1321 ggcgaactcg gccggcaact gcgtcaattc gaaataatgc gtggcgaaca acgtgtggca
     1381 gccgttatgg gagagcagat ggcgcgcgat ggcccacgcg agcgcgaggc cgtcgaaggt
     1441 ggacgtgccg cggccgattt cgtccatcag cacaagactc gacggcgtgg cgtcgttgag
     1501 aatagccgcc gcttccgtca tctcgaccat gaaggtggaa cggccgccgg cgaggtcatc
     1561 ggcggcgccg atgcgtgtga agatccggtc gattggtcca aagcatgcgc gtttcgcggg
     1621 cacatagctg cccacatacg ccagtagcgc gatcaacgcg gtctgtcgca tgaacgtcga
     1681 cttaccgccc atgtttggtc cagtgatcag cagcagcttg cgctcgatat tcagggagca
     1741 gtcattggcg atgaactgct cgacctgcgc ttccactacc ggatgccgcc cttgctcaat
     1801 atcgatacct gcatcgtccg cgaatgccgg ggcgatccag tcgagcgcgc gcgcccgttc
     1861 cgcgaacgcg ccaagcaggt cgagttcagc gagcgcagcc gctacgcgct ggcagtcgcc
     1921 gatgtgcggc aacagtgttt gcagcagtgc gtcgtaaagc aaacgctcgc gggccagtgc
     1981 ccggtcctgc gcggacagcg ccttgtcttc gaaggtcttc aactccggcg tgatgtaacg
     2041 ctcggcgttt ttcagtgtct ggcgacggcg gtagtcatct ggaaccttgt ccgtctgacc
     2101 gcgcgtgact tcgatataaa agccatgcac cttgttgtac tcaacccgca ggttcgcgat
     2161 gcccgttcgc gtgcgctcgc gcgtttccag atcgatcagg aactggtcgc agttctcgga
     2221 gatgtcgcga agctcatcga ggtcagcgtc gtaaccgcgc gcaatcacgc caccatcgcg
     2281 aatcagcgcc gcgggttcgg gcgcgattgc gcggctcagc aatgcgaggc attcaggcgg
     2341 cggctcaagc gatatgtcga tacgttcaag cgatgccgca ttcatcttca cggcagcaag
     2401 ccgttcgcgc agttggggga gtgccgcgaa ggtatcgcgc agactggaga ggtcgcgtgg
     2461 ccgtgcagac agcagcgcaa gccgccccgt aatccgttcg atatccgaaa tctgccgcaa
     2521 cgctgcgcgc aaaccatcga ggctcgcggt
//
LOCUS       DATGBK010001160         3523 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_222548, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001160 DATGBK010000000
VERSION     DATGBK010001160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222548"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1132
                     /locus_tag="VKJ77_16190"
     CDS             <1..1132
                     /locus_tag="VKJ77_16190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HMC46861.1"
                     /translation="VGELVITQAMLAETTSTFDPALHDRLFNGMAQLERNARDLQEAV
                     MSIRMMPMDYVFSRFPRLVRDLAGKLGKEVELVTFGQATELDKSLIERIVDPLTHLVR
                     NSLDHGIETVEARRAAGKATAGQLVLSAAHHGGNIVIEVSDDGAGLRRDKILAKALKQ
                     GMQVSEQMSDDEVWQLIFMPGFSTAEQVTDISGRGVGMDVVKRNIQAMGGHVEIQSRE
                     GRGTTTKIVLPLTLAILDGMSVKVGSEIFILPLNFVMESLQPVADDIYTVAGGERVVR
                     VRGEYLPLVALHQVFEVVDARTEPTQGIITIIQSEGRRFAMLIDELVGQQQVVVKNLE
                     TNYRKVHGISAATILGDGSVALIVDVAALNRENRSAHGALTH"
     gene            1188..1721
                     /gene="cheW"
                     /locus_tag="VKJ77_16195"
     CDS             1188..1721
                     /gene="cheW"
                     /locus_tag="VKJ77_16195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018432496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HMC46862.1"
                     /translation="MAADIQSITSAVQRRDVQRVSQAEAAGQEFLVFTLGAEEYGIDI
                     LKVQEIRGYDNVTRIANAPAFIKGVINLRGIIVPIVDMRIKFNLGRVEYDNQTVVIIL
                     NVAHRVVGMVVDGVSDVLTLQADQVMPAPEFGATLTTEYLTGLGTVDGRMLILMDIEK
                     LMTSKEMELIDSVAVPA"
     gene            1766..>3523
                     /locus_tag="VKJ77_16200"
     CDS             1766..>3523
                     /locus_tag="VKJ77_16200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018441491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC46863.1"
                     /translation="MLKNWSIRTTLTLVGLLFVGFAAVVSALSLNGLHSAGNSLSLLA
                     DSDMVSMRALSDASSNLLRSRVALDRVRGLTEANNADEAKKVLDRGQFLLDKSNESWK
                     LFLSTPKPMLPQATLDDIVAKRDALMHEGVEPEFAAMRTGDMAAYHAIADTKISPMFI
                     ALDAATAVTADLTQKHAEQLRADAAANIALLIEVIIGVMVLAVLTLIATRVAMGGMIV
                     QPINDAVEHFERIAKGDLTKSAHTDKTNEIGRLFAGIERMRTNLTAMVGSVHHGAESI
                     DVGAREIASGNTDLSQRTEEQAASLQETASSMEQLTSTVKQNAENARQASQLAVNASD
                     IASRGGQVVEQVVDTMSAISSSSSKVVDIIGVIEGIAFQTNILALNAAVEAARAGEEG
                     RGFAVVAGEVRSLAQRSAAAAKEIKSLIGDSTAKVESGSVLVARAGETMDEIVQAVRR
                     VTDIMGEISAASDEQSQGIEQVSRAVGQMDEVTQQNAALVEQAAAAAASLEEQTRKLK
                     DVVGHWQVSSDASSSDPRARLEPKVIARAHTNASPAIKVAARPNVAANRAVNKLSASP
                     APAASAPATPVAKAPAAKLA"
BASE COUNT          735 a         1049 c         1151 g          588 t
ORIGIN      
        1 tgtcggcgaa ctggtgatca cgcaggcaat gctcgccgaa accacgagca ccttcgatcc
       61 cgcattgcac gaccgcctgt tcaatggcat ggcgcagctc gaacgcaacg cgcgcgacct
      121 gcaggaagcg gtgatgtcca tccgcatgat gccgatggac tacgtattca gccgcttccc
      181 gcgcctcgtg cgcgatctcg cagggaagct cggcaaggaa gtggaactcg tcacgttcgg
      241 ccaggcgacc gagctggaca agagcctgat cgaacgcatc gtcgatccgc tgacgcacct
      301 cgtgcgcaac tcgctcgatc acggcattga aaccgtggaa gcgcggcgtg cggcaggcaa
      361 ggcgacggcg gggcagttgg tgctgtcggc agcgcatcac ggcggcaaca tcgtgatcga
      421 agtcagcgac gacggcgcgg gcctgcgccg cgacaagatt ctcgccaagg cgctgaagca
      481 aggcatgcag gtcagcgagc aaatgtccga cgacgaagtc tggcaactga tcttcatgcc
      541 gggcttttcc accgccgagc aggtcaccga catctccggc cgcggcgtgg gcatggacgt
      601 ggtgaaacgc aacatccagg cgatgggcgg ccatgtcgag atccagtcac gcgaaggccg
      661 cggcaccacc acgaagatcg tgttgccgct gacgctggcg attctcgacg gcatgtcggt
      721 gaaggtgggc agcgagattt tcatcctgcc gctgaacttc gtcatggagt cgctgcaacc
      781 cgttgccgac gatatctaca cggtcgccgg cggcgagcgc gtagtacgcg ttcgcggcga
      841 atatctgccg ctggtcgcgc tgcatcaggt cttcgaagtg gtcgatgcgc gcacggaacc
      901 cacgcaggga atcatcacga tcatccagtc ggaaggacgc cgctttgcca tgctgatcga
      961 tgaactggtc ggccagcagc aagtggtggt gaagaacctg gaaacgaatt accgcaaggt
     1021 gcacggcatt tccgccgcga ccatcctggg cgacggcagc gtcgcactga tcgtcgacgt
     1081 agcggcactg aaccgtgaaa accgctcggc gcatggcgcg ttgactcatt aatgcactga
     1141 tcagacagca gacagtcgga acacccaacc aatttttgga ggctaacgtg gcagcagaca
     1201 tccaatcgat tacttcggcg gtacaacgcc gtgacgttca acgtgtcagc caggctgaag
     1261 cggcaggaca ggaattcctc gtcttcacgc tgggcgcgga agagtacggc atcgacatcc
     1321 tgaaggtgca ggaaattcgc ggctacgaca acgtcacgcg catcgccaat gcgccggcgt
     1381 tcatcaaggg cgtgatcaac ttgcgcggca tcatcgtgcc gatcgtcgac atgcgcatca
     1441 agttcaatct cggtcgcgtg gagtatgaca accagaccgt cgtgatcatc ctgaacgtcg
     1501 cgcatcgcgt ggtcggcatg gtggtcgacg gcgtgtccga cgtgctcacg ctgcaagccg
     1561 accaggtcat gccggcgccg gaattcggcg ccacgctcac cacggaatac ctgacgggcc
     1621 tcggtaccgt cgatggccgg atgctgatcc tgatggacat cgaaaagttg atgacgagca
     1681 aggagatgga gttgatcgac tccgtcgccg tgcccgcctg agtcttcata tagttggtta
     1741 ccagcacgct ggtcgggaag aagacatgct taagaactgg tcgattcgta ccacgctgac
     1801 gctcgtgggc cttttgttcg tggggtttgc agcagtggtg agcgcgttgt cgctgaacgg
     1861 tttgcactcg gccggcaatt cgctttcctt gctggccgac agcgacatgg tgtccatgcg
     1921 tgcactcagc gacgcgtcgt cgaacctgct gcgctcacgc gtggcgctcg accgcgtgcg
     1981 cgggctgacg gaggcgaaca acgccgatga agcgaagaag gtgctcgatc gcgggcagtt
     2041 cctgctcgat aaatcgaacg agagctggaa gcttttcttg tcgacgccaa agccgatgtt
     2101 gccgcaagcc acgctcgacg acatcgtggc gaaacgggac gcgctgatgc atgagggtgt
     2161 cgaacccgag ttcgccgcga tgcgcactgg cgacatggcc gcgtatcacg ccattgcgga
     2221 caccaagatc agtccgatgt tcatcgccct cgacgcagca acggctgtca cggccgactt
     2281 gacgcagaag cacgccgagc agttgcgcgc ggacgcggcg gcgaatattg cgctgctgat
     2341 cgaggtgatc attggcgtga tggtgctggc cgtgctcacg ctcattgcca cccgcgtcgc
     2401 gatgggcggc atgatcgtgc agccgatcaa cgacgcagtc gagcacttcg agcgcatcgc
     2461 taaaggcgat ctgacgaagt ccgcgcacac ggacaagacc aatgagatcg gccgcttgtt
     2521 cgcgggtatc gagcggatgc gaacgaacct gaccgcgatg gtcggatcgg tgcatcacgg
     2581 tgcggaatcc atcgatgtcg gggcgcggga aatcgccagc ggcaacacgg atctctcgca
     2641 gcgtacggaa gaacaggcgg cgtcgctgca ggaaacggcg tcgagcatgg agcagctcac
     2701 cagcacagtg aagcagaacg ccgagaacgc gcgccaggct tcgcaactgg ccgtcaacgc
     2761 gtcggatatc gcgtcgcgcg gcggtcaggt ggtggagcag gtcgtggaca ccatgagcgc
     2821 gatttcatcg agttcgagca aggtggtcga catcatcggc gtgattgaag gcatcgcgtt
     2881 ccagaccaat attctcgcgc tgaacgcggc cgtggaagcg gcgcgggcag gagaggaagg
     2941 gcgcggtttc gcagtcgttg caggcgaagt gcgcagtctc gcgcaacgca gcgcggcagc
     3001 ggcgaaagag atcaagtcgc tgatcggcga ctccaccgcg aaggtggaaa gcggctccgt
     3061 gctggtcgcg cgcgccggcg agacgatgga cgaaatcgtg caggccgtgc gccgcgtcac
     3121 cgacatcatg ggcgagatca gcgccgcgtc ggacgagcag tcgcaaggca ttgaacaggt
     3181 gagccgcgcc gtcgggcaga tggacgaagt cacgcagcag aacgcggcgc tggttgaaca
     3241 ggctgcggca gcagcggcgt cgcttgaaga gcagacgcgc aagctgaagg acgtggtcgg
     3301 ccactggcaa gtcagcagcg acgcatcgtc cagcgacccg cgcgcgcgac tcgaaccgaa
     3361 ggtcatcgcc cgtgcgcata ccaacgcaag cccggcgatt aaagttgcag cacggcctaa
     3421 cgtcgcggcc aatcgcgccg ttaataagct tagtgcctca ccggctccgg ccgcttcggc
     3481 accggcaaca ccggtcgcga aagcgcccgc agcgaagctc gca
//
LOCUS       DATGBK010001161         1681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_222557, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001161 DATGBK010000000
VERSION     DATGBK010001161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222557"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..>1681
                     /locus_tag="VKJ77_16205"
     CDS             174..>1681
                     /locus_tag="VKJ77_16205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HMC46864.1"
                     /translation="MHPSDSPAATPALGTQRIVKIRRDYNAWVADETLEDYALRFTPR
                     SFRKWSEFRVANTALGAISFLALEAIGGSLALNYGFANTVWAIVVTSVLIFLTGLPIS
                     YYAANCGVDMDLLTRGAGFGYLGSTVTSLIYAGFTFIFFALEAAIMSLALEMYFHMPI
                     AVAYLISAFAIVPFVTFGITLINRLQSWTQPVWIVLLVAPYIAILIREPHLFSDWATF
                     AGYAQGGREFGLMPFGAACTVIFALVVQIGEQVDFLRFLPPRTAKNRVRWWCAMLAAG
                     PGWIVPGALKMLGGAFLMFIALQNQIDPSRATEPTQMYLVAFRYVFDSPGFALAATTL
                     FVIVSQVKINVTNAYAGSLAWSNFFARLTHSHPGRVVWLVFNVLIALMLVELGVFGAI
                     GKVLALYSNVAIAWIGALVGDLVINKPLGYSPKDVEFKRAHLYDVNPVGVGAMLVASI
                     AAALSQAGYLGEIAQALAPFIALAVAFICAPLIAFATRGRFYLARGSEDLEAG"
BASE COUNT          262 a          499 c          524 g          396 t
ORIGIN      
        1 aagttaagtg gccgatacgc gtaccgaaat acgtcttttg acgtacagcg cgggtattta
       61 tggatcgcta gactcatgac gcgacgcgtg caaagtgagg ttcaggactt catcgccgtg
      121 tcatcacgca ccgctttcct gttcattgcg cccaaccggc atcctcgaga gtcatgcatc
      181 catccgattc ccccgccgct acgcccgcgc tcggcaccca gcgcatcgtc aagatccggc
      241 gcgactacaa cgcctgggtc gccgacgaaa cgctagagga ctacgcgctg cgcttcacgc
      301 cccggtcgtt tcgaaagtgg agcgaattcc gggtcgcgaa cacggcgtta ggggcgatct
      361 cgttccttgc gctggaggcc attggtggat cgcttgcgct gaattacggc ttcgccaata
      421 cggtttgggc gatcgtggtg acgtccgtgc tgatcttcct gaccggcttg cccatcagct
      481 attacgcggc gaattgcggt gttgacatgg acctgctgac gcgcggcgcg gggttcggtt
      541 atctcggctc gacggtcacg tcgttgattt atgcgggctt tacctttatt ttcttcgcgc
      601 ttgaagcggc catcatgtcg ctcgcgctgg agatgtattt ccacatgccg atcgcggtcg
      661 cgtatctcat cagcgcgttc gcgatcgtgc cgttcgtgac gttcggcatc acgctgatca
      721 accgcttgca gagctggacg cagcccgtgt ggatcgtgct gctggtcgca ccatatattg
      781 ccatcctgat ccgcgagccc catctgttct ccgactgggc gaccttcgcg ggctacgcgc
      841 aaggcggccg cgaattcggc ctgatgccgt tcggcgcggc ctgcacggtg atttttgcgc
      901 tggtggtgca gatcggcgag caagtcgact tcctgcggtt cctgccgccg cgcacggcga
      961 agaaccgggt gcgctggtgg tgcgcgatgc ttgctgcagg tcccggatgg atcgtgccgg
     1021 gcgcgttgaa aatgcttggc ggcgccttcc tgatgttcat cgcgttgcag aatcagatcg
     1081 atccatcgcg ggccactgag ccgacgcaaa tgtacctggt cgcgttccgc tatgtcttcg
     1141 attcccctgg ctttgcgctg gccgccacca cgcttttcgt gatcgtctcc caggtcaaga
     1201 tcaacgtgac caacgcgtat gccggttcgc tcgcatggtc gaatttcttc gcgcgtctca
     1261 cacacagtca tccgggccgg gttgtctggc tggtgttcaa cgtgctgatc gcgttgatgc
     1321 tggtcgagct gggtgtattc ggtgcaatcg gtaaggtact ggcgctgtat tcgaacgtgg
     1381 cgatcgcgtg gattggcgca cttgtcggcg acctcgtgat caacaaaccg ctgggttaca
     1441 gcccgaagga cgtcgagttc aagcgcgctc atctctacga cgtcaatccg gtcggcgtcg
     1501 gtgcgatgct ggtggcatcg atcgcagcgg cgctttcgca agcgggttat ctcggcgaaa
     1561 ttgcgcaggc gctggcgccg ttcatcgcgt tggcggtggc gtttatctgc gcgccgttga
     1621 tcgcgtttgc tacccggggg cgcttctatc tcgcccgggg cagcgaggat ctcgaagcgg
     1681 g
//
LOCUS       DATGBK010001162         1891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_199365, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001162 DATGBK010000000
VERSION     DATGBK010001162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1891
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199365"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..817)
                     /locus_tag="VKJ77_16210"
     CDS             complement(<1..817)
                     /locus_tag="VKJ77_16210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching N-terminal
                     domain-containing protein"
                     /protein_id="HMC46865.1"
                     /translation="METKEQQQAKQALSDRQASDIAREAAHGRAHDDMPDPIRSTAGV
                     REVPPSTPVTNTDGAFIATEHTSYANERQFVLKAGNTFVVNDANGDIRGNDDGLFVND
                     TRVLSQLRLTFGGRSPSLLSGSVSSDNAVFTAHLTNRPLPPIGGATTPEGVIHVERRR
                     VLSRHVLHEAIVLTNYGTEPATVPLSINFAADFHDMFEVRGSTRPKRGAMREPCIENG
                     EVVLRYTGLDEVERTARIQFSPASHSLSVNRADYVLRIQSETAMSIYLSITAVT"
     gene            971..1789
                     /locus_tag="VKJ77_16215"
     CDS             971..1789
                     /locus_tag="VKJ77_16215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011544716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HMC46866.1"
                     /translation="MSFPHIDLLYSASGLAVGFLVGLTGVGGGSLMTPLLVLLFGIHP
                     ATAVGTDLLYAAATKATGTLVHGIKGSVDWRITGRLAAGSIPAAAITLVLLNRYGLNT
                     PAAARVIQLVLGYALLVTAVSLVFRPQLARLAYKTGMAREASGKPGAASRETRTVAWT
                     VLTGAILGVLVSITSVGAGAIGVTVLLLLYPRLPTARIVGSDIAHAVPLTLIAGTGHW
                     LLGSVNWDLLLSLLVGSLPGIVLGSMLSSRAPEVLLRNVLAATLVVVGVKLVLS"
BASE COUNT          302 a          599 c          603 g          387 t
ORIGIN      
        1 gcgtgacggc cgtgatcgac aagtagatcg acatcgccgt ttccgactgg atccgcagta
       61 cgtagtccgc ccgattgacc gagagcgaat gcgacgcagg cgaaaactgg atgcgcgcgg
      121 tccgctcgac ttcatcgagc cccgtatagc gcaacacgac ttcgccattt tcgatgcacg
      181 gctcgcgcat cgccccgcgt tttggacggg tagatccgcg cacttcgaac atgtcgtgga
      241 aatcggcggc gaagttgatc gaaagtggca ccgtggccgg ttccgtgccg taattggtca
      301 gcacaatggc ttcgtgcagc acgtgccgcg acaacacccg gcggcgctcg acgtggatca
      361 cgccctcggg cgtggtcgcc ccgccaatgg gcggtagcgg ccggttggtc agatgcgcgg
      421 taaagacagc gttgtcgctg gatacactgc cggacaggag cgacggcgag cgtccgccga
      481 aagtcaggcg caactgcgac aacacgcggg tgtcgttgac gaaaagaccg tcgtcattgc
      541 cgcggatgtc gccgttcgcg tcgttgacca cgaatgtatt gccggccttg agcacgaact
      601 ggcgctcgtt cgcgtagctc gtatgctcgg ttgcgataaa tgcgccgtcc gtatttgtga
      661 cgggcgtcga cggaggaacc tcgcgaacgc cggccgtgct gcggatcggg tcgggcatgt
      721 cgtcatgagc gcggccatgg gcagcttcgc gagcgatatc actggcctgt cggtcgctga
      781 gcgcctgctt tgcttgctgt tgttccttcg tttccattac accttcctga aagagttgcc
      841 tggacacccg ggcgattgta cggccggatc ctgcgaatca atttttgcgg accggaggca
      901 agcgcgccgc gcacccgcta tcatcgaccg tttttcgacc gacattcatc taaccggttc
      961 tcctcgccgc atgtcttttc cgcacatcga cttactgtat tcagcatccg gcttggccgt
     1021 cggcttcctc gtgggcctga ccggcgtggg cggcggctcg ctgatgacgc cgctgctcgt
     1081 gctcctgttc ggtatccacc cggccaccgc ggttggcacg gacctgctct acgcggccgc
     1141 gaccaaggcg accggcacgc tggtccacgg catcaagggg tccgtggact ggcggattac
     1201 cggccggctt gcggcgggaa gcattcctgc ggcggcaatc accctggtcc tgctcaaccg
     1261 gtacggtttg aacacgcccg ccgccgcccg ggtgatccag ctcgtgctgg gctacgcgct
     1321 gctggttacc gctgtctcgc tcgtgttccg tccacagctc gcgcgcctgg cctacaagac
     1381 cgggatggcc cgcgaagcca gcggaaaacc aggagcggcg agccgtgaaa cccgtacagt
     1441 ggcctggacc gtgctcaccg gcgcaatcct gggcgtgctc gtctcaatca cttcagttgg
     1501 cgcgggcgcc attggcgtga ccgtgctgtt gctgctctac ccgcgtttgc cgactgcgcg
     1561 gatagtcggg tccgatattg cgcacgcggt tccgcttacg ctaattgcag ggaccggcca
     1621 ctggctgctc ggttccgtca actgggacct gctgctgtcc ctgctcgtgg gttcgctgcc
     1681 ggggatcgtg ctgggcagca tgctttcctc ccgggcgccg gaggtactgc tgcgcaacgt
     1741 gctggccgcc acgctggtgg ttgtcggcgt gaaactggta ctcagttgat tcccgggcag
     1801 ttcgaacgat agtagtcgcc cagcgtgaag ctttccagtc gaccgaacgg catacgacgt
     1861 ccgggcagac acttttttca atgcacaggc c
//
LOCUS       DATGBK010001163         3947 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_106479, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001163 DATGBK010000000
VERSION     DATGBK010001163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3947
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106479"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VKJ77_16220"
     CDS             complement(<1..192)
                     /locus_tag="VKJ77_16220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC46867.1"
                     /translation="MKQIKVDVAVIGAGTAGMAAYRAARQAGKQVVLIEGAEFGTTCA
                     RVGCMPSKLLLAAANGLHDA"
     gene            complement(239..2098)
                     /locus_tag="VKJ77_16225"
     CDS             complement(239..2098)
                     /locus_tag="VKJ77_16225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019920760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HMC46868.1"
                     /translation="MVSPREDRPGAQHGIAIDAHGLIGNMHTTALVSTEGVIDFMCFP
                     RIDSPTVFGSLLHPERGGAFSITPAFEVSRAKQLYLPETNVLLTRFMSAQAVCEIVDF
                     MPVADADDDAKAMSNCVVRIVRAIYGNMTVQMRCAPRFDYARGSHETAQVDTHTLRFT
                     PADQIANQTEALTLDATVPLANDHDDAVASFDLKQDETACFIFGAESDAMRKTLPCEQ
                     ALSETIDFWREWSRQSTYRGRYREVVMRSALLLKLLSSRATGAIVAAPTFGLPETSDG
                     GRRWDYRYTWIRDAAFSVYALLRLGYTGEARNFKNWIAERNKQCDSDGSFSVMYAVDG
                     EESPEEEVISELYGSGAAPPLIGNAARDQTQLDVYGALLDAIYLYNKYGEAISYDGWR
                     HVTRTVNFVAENWQQADQGIWEFRNGGRPLLHSRLMCWVAMDRAIRLAQKRSLPAPFT
                     EWNAVRDAIHEDIYAHFWNDEIQSFVQTPDSKILDASTLMMPLVRFIGPKDPRWLSTL
                     DAIGDELGVDPLIFRYTRGDSLDGLPGEEGGFSACSFWYAEALVRAGRVDEGRLVFEK
                     MLAYANHVGLYSEEVAISGEALGNFPQALTHLALISTAFQLDRSLDGAHPQWS"
     gene            complement(2091..2891)
                     /locus_tag="VKJ77_16230"
     CDS             complement(2091..2891)
                     /locus_tag="VKJ77_16230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC46869.1"
                     /translation="MNPVLQGQVALVTGGSSGIGYGVAQALADAGASVAINYHSHGEA
                     AEALAASIEKAGGQAIALQADVSDEADIDAMFDTLIKRFGTVDIVVANSGLQKDAKFV
                     DMTLADWNAVMNVNLTGQFLTAQRAVREFLRRGPRPVSKALGKIICMSSVHEVIPWAG
                     HVNYASSKGGIQMMMKSLAQEVAPHRIRVNSIAPGAIRTPINKAAWDSPEALKALLEL
                     VPYGRIGESEDIGRAAVWLASDDSDYVVGTTLFVDGGMTLYPGFADNG"
     gene            complement(3056..3919)
                     /gene="pdxY"
                     /locus_tag="VKJ77_16235"
     CDS             complement(3056..3919)
                     /gene="pdxY"
                     /locus_tag="VKJ77_16235"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008478 - pyridoxal kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009443 - pyridoxal 5'-phosphate salvage
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HMC46870.1"
                     /translation="MQNVLSIQSHVVFGHAGNSAAVFPMRRMGVNVWPLNTVQFSNHT
                     QYGRWTGGVVDADELTRVIDGIGAIGVLSRCNAILSGYLGSPEQGAAVVEIVKMVKAV
                     NPKARYFCDPVMGTTSGCIVEPGIQEFLVNTMPEVADAMTPNHIELQKLTGRTIETVD
                     EAVAACREVIARGPTVVLVKHLIDKNSRADTFNMLAVTATEAWFTQRPLYPFARQPVG
                     VGDLTSAVFLARTLLGDSVRAALEHTLAAVNAVVRTTFQAGRYELEIVASQDEIAYPT
                     ERFPAIGVDSE"
BASE COUNT          723 a         1226 c         1229 g          769 t
ORIGIN      
        1 cgcgtcgtgc aggccattgg cggcagcgag taacagcttg gacggcatgc agcccacgcg
       61 cgcgcaggtc gtgccgaact cggcaccctc tatcagcacg acttgcttgc ccgcctgccg
      121 tgccgcacga tacgcggcca taccggccgt cccagcgcca atgacggcga cgtccacctt
      181 gatctgcttc atcgataccc ttgattggat gcgctcgagc ctgtgctcga gcatgtcttc
      241 acgaccactg cggatgcgcg ccgtccaggc tacggtcgag ctggaacgcg gtgctgatca
      301 gcgcaagatg ggtcagtgcc tgaggaaaat tgcccagcgc ttcgccactg atcgcaacct
      361 cttcggagta gagaccaacg tggttcgcat aagccagcat tttctcgaat acaagccgtc
      421 cttcgtccac gcgtcccgct cgcaccagtg cttctgcgta ccagaacgaa cacgcgctga
      481 atccaccttc ctcgccggga aggccgtcca gcgaatcacc gcgcgtatag cggaagatca
      541 gcggatcgac gcccagttcg tcgccgattg catcgagcgt ggaaagccag cgcgggtctt
      601 tcgggccgat gaaacgcacg agcggcatca tcagcgtcga tgcatcgagg atcttcgaat
      661 cgggtgtctg gacgaagctc tgtatctcgt cgttccagaa gtgcgcgtag atatcttcgt
      721 ggatggcgtc gcggaccgcg ttccactccg tgaacggcgc gggcagcgaa cgtttttgag
      781 cgagacgtat cgcgcggtcc atcgcgaccc agcacatcaa tcgcgaatgc agcaggggcc
      841 gcccgccgtt gcggaattcc cagatgccct ggtccgcttg ttgccagttc tccgcaacaa
      901 agtttacggt gcgcgtaacg tggcgccagc cgtcgtagga aatggcttcg ccgtatttgt
      961 tgtagagata gattgcgtcc agcagcgcgc cgtagacgtc gagctgcgtc tgatcgcgcg
     1021 cggcattgcc gatcagcggg ggcgccgcgc cgctgccgta cagttccgag atgacttctt
     1081 cttccggtga ctcttcgcca tctaccgcgt acatcacgct gaatgaaccg tccgagtcgc
     1141 actgcttgtt gcgctcggcg atccagttct tgaagttgcg cgcctcgccc gtataaccga
     1201 gccggagcag cgcgtagacg gagaatgcag cgtcgcgaat ccaggtgtat cggtaatccc
     1261 agcggcgtcc gccgtccgat gtctccggca ggccaaacgt gggcgcggcg acgatcgcgc
     1321 cggttgcgcg cgagctcagc aacttgagca gcagcgccga gcgcatcacg acttcgcgat
     1381 agcggccacg gtaagtggat tgccgcgacc attcgcgcca gaagtcgatg gtttcggaca
     1441 gcgcttgctc gcaaggaagc gtcttgcgca tcgcatcgga ttccgcgccg aagatgaagc
     1501 acgccgtctc gtcttgcttg agatcgaagc tggcgacggc gtcgtcatga tcgttcgcca
     1561 gcggcacggt tgcatcgagc gtgagtgctt ctgtctggtt tgcaatctgg tccgcaggcg
     1621 tgaaacgaag cgtatgggtg tcaacctgcg cggtttcatg actgccgcgg gcatagtcga
     1681 aacgcggcgc gcagcgcatt tgcacggtca tgttgccgta gatcgcacgc actattcgca
     1741 caacgcaatt ggacatcgcc ttcgcgtcgt catccgcgtc cgcgaccggc atgaagtcga
     1801 cgatctcgca cacggcctgc gccgacatga agcgcgtgag cagcacgttc gtttccggca
     1861 ggtacagctg cttcgcgcgc gacacctcga aggccggcgt gatgctgaac gcacccccac
     1921 gttcagggtg cagcagcgac ccgaacacgg tcggcgaatc gatgcgcgga aaacacatga
     1981 agtcgatcac gccttcggtc gacaccagcg cggtcgtgtg catattgccg atcaggccat
     2041 gcgcgtcaat agcgatgccg tgctgcgcgc cggggcggtc ctcgcggggg ctaaccattg
     2101 tccgcaaagc ccggatacag ggtcatgccg ccgtccacga acaaggttgt gccaaccaca
     2161 tagtcgctgt cgtcggaggc cagccagacc gctgcccgac cgatatcctc gctctcccca
     2221 atccggccgt agggcacgag ttcgagtaac gccttcagtg cctcggggct gtcccacgcc
     2281 gccttgttga tcggcgtgcg gattgccccc ggtgcgatcg aattcacgcg gatcctgtgc
     2341 ggcgcgactt cctgagcgag cgatttcatc atcatctgga tgccgccctt cgacgacgca
     2401 tagttgacat gccccgccca gggaatgact tcatgcaccg agctcatgca gatgatcttg
     2461 cccagcgctt tggacaccgg acgcgggccg cgccggagaa attcgcgcac ggcgcgttga
     2521 gcggtgagga actggcccgt gaggttcacg ttcatcacgg cgttccagtc ggcgagcgtc
     2581 atgtcgacga acttcgcgtc cttctgcaag ccggaattcg cgaccacgat gtccaccgtg
     2641 ccgaaacgct tgatcagcgt gtcgaacatg gcgtcgatat cggcttcgtc cgagacgtcg
     2701 gcctggagcg cgatggcctg gccaccggct ttttctatcg atgcggcgag cgcttcagcg
     2761 gcttcgccat gcgagtggta gttgatggcg acgctcgcgc cggcatcggc gagcgcttgg
     2821 gccacgccgt agcctatgcc tgaactgccg ccggtgacga gtgcgacctg accttggagt
     2881 actgggttca taacgttccc ggatgggatg cgaagcgcgc catgtgcgcc gctttcactg
     2941 cgtagcgctt gctcgcgatg catctgcttg ggggccggcc tgggccggag acgtcatggg
     3001 gccaagcaag cgccggtccc gaccgggaaa ggtttcatag tcgggagcag cggttctact
     3061 cggaatccac accaatcgcg gggaaacgtt ccgtgggata ggcgatttcg tcctgcgagg
     3121 cgacgatttc aagctcgtag cgcccggcct ggaaggtggt cctgaccacg gcgttcacgg
     3181 ccgccagcgt gtgttccagc gcggcacgca cggagtcgcc caatagcgtg cgagcgagaa
     3241 atacagcact ggtcaagtcg cctacgccga ccggttgccg cgcgaacgga tagagcggcc
     3301 gttgcgtgaa ccatgcttcg gtcgcggtca cggccagcat gttgaaggta tcggcacggc
     3361 tgtttttatc gatcaggtgt ttgacgagga ccactgtcgg accgcgggct atcacctcgc
     3421 ggcacgcggc gaccgcttcg tccaccgtct cgatggtgcg ccccgtcagc ttctgcaatt
     3481 cgatgtgatt cggcgtcatg gcatcggcga cttccggcat ggtattcacc aaaaattcct
     3541 ggataccggg ttcgacaatg cagccgctgg tggtgcccat gaccgggtcg cagaaatagc
     3601 gtgctttcgg attgacggct ttcaccatct tgacaatttc cacgaccgca gcgccttgct
     3661 cgggcgagcc gagatagcct gacaggatcg cattgcagcg cgacagcacg ccgatagcgc
     3721 caatcccgtc gatcacgcgc gtcagttcat cagcgtcgac aacaccaccg gtccagcggc
     3781 cgtattgcgt gtgattcgag aactgcacgg tgttgagcgg ccagacgttg acgcccatgc
     3841 ggcgcatggg gaagacagcc gcgctgttgc ctgcgtggcc gaagaccaca tgtgactgga
     3901 tactgaggac gttttgcatg atggttttta gcgaggtgca ggacagc
//
LOCUS       DATGBK010001164         2206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_152604, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001164 DATGBK010000000
VERSION     DATGBK010001164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152604"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VKJ77_16240"
     CDS             <1..364
                     /locus_tag="VKJ77_16240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HMC46871.1"
                     /translation="IAGGDPVLTLFSWLTNVATLCIIALMALASLAVVMFFRKRGDAS
                     ESKMRTVILPLVAAAALGSILVLAIANFSILTGASKTISYALTALLPLAALIGVALSQ
                     RLLRSDPRLFGQLGSSKN"
     gene            complement(698..1807)
                     /locus_tag="VKJ77_16245"
     CDS             complement(698..1807)
                     /locus_tag="VKJ77_16245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012328707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II histone deacetylase"
                     /protein_id="HMC46872.1"
                     /translation="MTQTAFFTDERTFWHTGGTHALFFPVGGWVQPPSSSSYAESPDS
                     KRRLLSLIQASGLGSKLDMQSAALATDEDLLRIHPRDYLTRFKALSDTTGGDLGDLAP
                     FGKGSYEIAALSAGLAIAAIDTVLDGGARNAFSLSRPPGHHCLRDKPMGFCLFANIPI
                     AIEAARARHGVERVAVLDWDVHHGNGTQSIYYDDPNTLTISLHQDGCFPPGYSGEDDR
                     GAGTGFGANINVPLLPGGGHDAYLYAIERIVIPALDKFRPDLIVIASGLDASAVDPLA
                     RMLLHSESYRAMTRLMLDAANRHCNGGLAIVHEGGYSEAYVPFCGHAIVETLADVRTE
                     VTDPMLDLAIAQQPNPRFAAFQRQLIDELAKSFEL"
     gene            complement(1852..>2206)
                     /locus_tag="VKJ77_16250"
     CDS             complement(1852..>2206)
                     /locus_tag="VKJ77_16250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46873.1"
                     /translation="GGRVARYAMLATGYAILAAALIALGAHPGAAAFTVAIFAFKFAW
                     TFVLPFILAAAAKNDTSGRLMASLNLVIGVGLATGPLIVGVLLDAGATLNTLFIGAAA
                     VCATSFLCLLGVERA"
BASE COUNT          423 a          676 c          690 g          417 t
ORIGIN      
        1 gatcgcgggc ggggatccgg tgctcaccct cttctcctgg ctgacgaacg tagcaacact
       61 ttgcatcatt gcgctcatgg cactggcttc gcttgcggtc gtcatgttct ttcgcaagcg
      121 cggcgacgca tcggaaagca agatgcgaac ggtcatcctg ccactcgtcg cggctgccgc
      181 actcggatcg atcctggtac ttgcgattgc aaacttcagc atcctgacgg gcgcgagcaa
      241 gacgatctcc tacgcgctca cggcgttgct gcctctggct gccttgattg gcgtcgctct
      301 gtcacagcgc ctgctgcgct cggacccgcg actttttggt caactcggaa gctcgaagaa
      361 ttaagcccaa ggcatatccg gataaatgcg aggcgtcagc ggcgacgcgt cggcggacag
      421 cgcgacgtcg cgtgctgccc atacgcctga atgtagtcag cgcgtcactc tcaccgtttg
      481 ctcaaatcgg caggtgttga accagtaggg gaaaacgtgg aacccagagt cacagctcgg
      541 ctcgtggttc cgtaaaagtg ggggaacgat ggcggcgcca agcgagcgcg cctcgctcgc
      601 ttgcgttctt gctgggtttg ccaggcccac ttttaaggac gctgccggca tctcggcatc
      661 gtcctaatga atgaaaccgc ggcactcgct tgcgcgacta caactcaaag ctcttcgcca
      721 gttcatcgat cagttgccgc tggaacgcgg cgaagcgagg gttcggttgc tgcgcgatgg
      781 cgagatcgag catcggatcg gtgacctccg tccgtacgtc ggcaagcgtt tcgacgatgg
      841 cgtggccgca gaatggcaca taggcctccg agtacccgcc ctcgtgaacg atcgcgagac
      901 ccccgttgca atgtcggttc gccgcgtcga gcatgaggcg cgtcatcgcc cggtagcttt
      961 cgctatgcag cagcatccgt gcgagcggat cgacggcgct cgcatccaga ccgcttgcga
     1021 taacgatcag atctggacgg aacttgtcga gcgcgggaat cacgatccgc tcaatcgcgt
     1081 acaggtaggc atcgtgtcca ccgccaggca agagcgggac gttgatgttc gccccgaacc
     1141 cggtgcccgc cccgcggtca tcctcgccgc tgtaccccgg agggaaacag ccatcctgat
     1201 gcagcgagat ggtcagcgtg ttcggatcgt cgtaatagat cgactgtgtg ccgttgccgt
     1261 gatgcacgtc ccagtcaagc acggccactc gttccacgcc gtgccgtgcg cgcgccgctt
     1321 cgatggcgat gggaatattc gcgaacaggc agaaacccat cggcttgtcg cgcaaacaat
     1381 ggtggcccgg cggtctcgac aacgaaaacg cgttgcgcgc gcccccatcg agcaccgtat
     1441 caatcgcggc gatcgcgagt ccagcggaga gtgcggcaat ttcgtagctg cctttcccaa
     1501 acggtgcgag gtctcccaag tcgccgcccg tcgtgtcgct cagagccttg aagcgggtga
     1561 ggtagtcgcg cgggtgaatg cgcaacaggt cctcgtcggt ggcgagtgca gcgctttgca
     1621 tgtcgagctt gctgccaagc cctgaggcct gaatcagcga gagcagtcgg cgcttcgaat
     1681 ccggcgattc ggcatagcta ctgctggaag gcggttgcac ccagccgccg accggaaaaa
     1741 acagtgcgtg agttccgccc gtatgccaga aggtgcgttc atcggtaaag aatgcggttt
     1801 gagtcatcgt ggttctcgaa ggtttggttc aaatgcagcg attcggtacc gtcaggcgcg
     1861 ctcgacgccg aggaggcaga ggaaggacgt cgcgcacact gctgctgcac ctataaagag
     1921 cgtgttcaag gttgcgccgg cgtcgagcag gacacctacg atcagcgggc ctgtcgcgag
     1981 gccgacgccg atcaccaggt tcagtgacgc catcaaccgt cccgaggtgt cgttcttcgc
     2041 tgcggctgcg agaatgaatg gcaaaacgaa cgtccaggcg aatttgaatg cgaagatcgc
     2101 caccgtgaat gccgcggccc ctgggtgagc ccccagcgca atcagggccg cggccagaat
     2161 cgcgtaaccc gtcgcgagca tcgcgtagcg cgcgacgcgc ccgcca
//
LOCUS       DATGBK010001165         6235 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_60707, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001165 DATGBK010000000
VERSION     DATGBK010001165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6235
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60707"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..970)
                     /locus_tag="VKJ77_16255"
     CDS             complement(<1..970)
                     /locus_tag="VKJ77_16255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004527298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC46874.1"
                     /translation="MRLTSIKLAGFKSFVDPTHFQVPGQLVGVVGPNGCGKSNIIDAV
                     RWVLGESRASELRGESMQDVIFNGSTARKPGSRASVELIFDNADGRAGGQWGTYAEIA
                     VKRVLTRDGTSSYYINNLPARRRDIQDIFLGTGLGPRAYAIIGQGMIARIIEAKPEEL
                     RVFLEEAAGVSKYKERRRETENRLHDTRENLTRVEDIVRELSANLEKLEAQAIVATKY
                     KTLQADGEEKQRLLWLLRKNEAGNESERQQRAISDAQIELEAQTAKLREVEAQLETLR
                     VAHYSASDAMQGAQGALYEANSEVAKLEAEIRFIVESRNRVQAQIAA"
     gene            1486..2712
                     /gene="dapC"
                     /locus_tag="VKJ77_16260"
     CDS             1486..2712
                     /gene="dapC"
                     /locus_tag="VKJ77_16260"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006498676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009016 - succinyldiaminopimelate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0019877 - diaminopimelate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyldiaminopimelate transaminase"
                     /protein_id="HMC46875.1"
                     /translation="MNPLLQKLQPYPFEKLRALFKGVTPRADLAPISFGIGEPKHATP
                     ALIREAVVNAMSGLASYPATAGSEPLRQAIADWTKERYGLPAVDAATEVLPVSGSREA
                     LFSLAQTVIDSRSTGEPPVVVCPNPFYQIYEGAALLAGAEPYFVNSNPARNFACDYAA
                     VPDAIWARTQLLYVCSPGNPTGAVLTLDDWRELFALSDRHGFVIASDECYSEIYFNEA
                     TPPLGGLEAAHKLGRGFERLVMLSSLSKRSNVPGMRSGFVAGDASILKQFLLYRTYHG
                     AALSPMFQAASVVAWKDEAHVRDNRALYLKKFTTVTPMLAEVLDVRLPDAAFYLWANV
                     AGTGLTDTEFAARLYADYNVTVLPGSYLARDAHGTNPGSGFIRIALVADVDECVEGAR
                     RIVEFCSTLTQRRPAQ"
     gene            2751..3578
                     /gene="dapD"
                     /locus_tag="VKJ77_16265"
     CDS             2751..3578
                     /gene="dapD"
                     /locus_tag="VKJ77_16265"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HMC46876.1"
                     /translation="MSQQLQQIIDTAWDNRAELSPKSAPADVRDAVAHAIEQLDKGLA
                     RVAEKQNGEWVVNQWLKKAVLLSFRLEDNAPMPAGGYSQFYDKVPSKFANYTAEDFAA
                     GGFRVVPPAIARRGAFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHL
                     SGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYD
                     RETGSVTYGRIPAGSVVVAGNLPSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD"
     gene            3582..3944
                     /locus_tag="VKJ77_16270"
     CDS             3582..3944
                     /locus_tag="VKJ77_16270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HMC46877.1"
                     /translation="MAAKKIVVYGIPNCDTVRKARVWLEEHDVPFEFYDFKKAGVSTF
                     LLQDWLKDVTLDELINRRGTTWRGLSDTYKDEAGSTAGAIALMIHKPSIIKRPVLVVN
                     GRVKSLGFDADKYETLFV"
     gene            4053..5192
                     /gene="dapE"
                     /locus_tag="VKJ77_16275"
     CDS             4053..5192
                     /gene="dapE"
                     /locus_tag="VKJ77_16275"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006493370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HMC46878.1"
                     /translation="MSGTLLLSEQLIARASVTPDDQHCQNLLIERLAALGFECETIAS
                     GGVTNLWAVKRGTDGTDGKLLAFAGHTDVVPTGPLEQWTSPPFVPTHRDGKLYGRGAA
                     DMKTSIAAFVVSSEEFIAAHPAHRGSLAFLITSDEEGPATDGTVKVIEALKARGERLD
                     YCIVGEPTSSTTLGDMVKNGRRGSMSGKLTVKGVQGHIAYPHLAKNPIHLLAPALAEL
                     VSTHWDDGNDYFPPTTWQVSNLHSGTGATNVIPGHIELMFNFRFSTASTVEGLQSRVH
                     AILDKHALEYDLAWSVSGLPFLTPRGTLSNALEQAILDETGVRTELSTTGGTSDGRFI
                     ARICEQVVEFGPPNGSIHKIDEHVAVAFIEPLKNVYSRVLETLLA"
     gene            5221..6105
                     /gene="prmB"
                     /locus_tag="VKJ77_16280"
     CDS             5221..6105
                     /gene="prmB"
                     /locus_tag="VKJ77_16280"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA];
                     GO_process: GO:0042273 - ribosomal large subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HMC46879.1"
                     /translation="MALPFTTVRDLLRFAVSRFTAADLSFGHGSSNAFDEAAYLVLHS
                     LHLPLDTLDPFLDARLLDTEIDAIMKVIERRATDRVPAAYITNEAWMHGHRFYVDERV
                     IVPRSFIGELLQDGLQPYVQDPDEVSRVLELCTGSGCLAILAAQAFQNADIDAVDISA
                     PALEVAHKNVDDYDLDSRVALYEGDLFAPLPVGRYEVIITNPPYVNALAMQTLPAEYR
                     HEPELALAGGTDGMDIVKRIVGEARKWLTEDGVLVVEIGNERANVEATLGGLDIVWLS
                     TSAGDDNVFLIQAADLPG"
BASE COUNT         1158 a         1938 c         1912 g         1227 t
ORIGIN      
        1 acgcagcgat ctgcgcctgc acccgattac gcgattccac gataaagcga atctccgcct
       61 cgagcttggc cacttccgag ttcgcctcgt acagcgcgcc ctgagcgccc tgcatggcgt
      121 cgctcgcgct gtagtgcgcc acgcgcaagg tttccagttg cgcttcgact tcgcgcagct
      181 tggcggtttg tgcttcgagt tcgatctgcg cgtcgctgat cgcgcgctgc tggcgctccg
      241 actcgttgcc cgcctcgttt ttgcgcaaca accacaggag ccgttgcttt tcttcaccgt
      301 cggcctgcag cgtcttgtat ttcgttgcga cgatcgcctg ggcctcaagc ttctccagat
      361 tcgcgctcaa ctcgcgcacg atgtcttcca cgcgcgtcag gttttcgcgg gtatcgtgca
      421 agcggttttc ggtctcgcgg cggcgttcct tgtacttgga cacgcccgcg gcttcttcca
      481 ggaacacgcg cagttcttcg ggcttcgctt cgatgatccg cgcgatcatg ccctgcccga
      541 tgatcgcgta ggcacgcggt ccgagacccg tacccaggaa gatgtcctgg atatcgcggc
      601 gccgggctgg caagttgttg atgtagtagc tcgacgtgcc gtcgcgcgtg aggacgcgct
      661 tgacggcgat ttcggcgtag gtgccccact ggcccccggc ccggccgtcg gcgttatcga
      721 agatgagttc gacgctggca cggctgccgg gcttgcgcgc cgtggagccg ttgaagatca
      781 cgtcctgcat cgactcgccg cgcagctcgg aagcgcgcga ttcgccgagc acccagcgca
      841 cggcgtcgat gatgttggat ttgccgcagc cattcgggcc caccacgccg acaagctggc
      901 ctgggacctg gaaatgggtg ggatcgacga aggacttgaa gccagcgagt tttatcgagg
      961 tcagacgcac ggcgatatcg ctgattgaaa agaattcggg agaacgggcc ggcgggcctc
     1021 cgagccatga tgcttgtgcg gcaggagata actactaacg ccggtcgaaa acgctcgggc
     1081 ggtgggtcga accccgtcga atcgaagcga tggagcgcaa cccgtggtgc tcttgctcga
     1141 cggcttatat ataactacaa gcaaccgcga gcccgcaacc cggcgaacgg tgacaatcat
     1201 accatcgcca gtcttgaatt cttttggttt gctgacacgg gtgtttctgc tcgcaacggc
     1261 ggcccgatcg gggttctgca ggggtcaatg acagtcgatt ttcggtctgc cagcggcggc
     1321 cgtgttccaa cgcccgcgca ctgtagaaac cggtcgtcat gcagccagca gaatcccctc
     1381 gaagcgccag caaacccaac cacgggcctg cggagggcta cgagggggct acgagggagc
     1441 tataatccga gccttgtcgt ttcattgtct gcagccgact tcgccgtgaa tccacttctc
     1501 cagaaacttc agccgtatcc attcgaaaag ctgcgcgcgc tattcaaggg cgtcacgccg
     1561 cgcgcggatc tggcgccgat cagctttggt atcggcgagc cgaaacatgc aacgccggcg
     1621 ctgatccgcg aggcagtcgt gaatgcgatg tccggcctcg cgtcctatcc cgccactgcg
     1681 ggcagcgagc cgttgcgcca ggccattgct gactggacca aagagcgcta cggcctgccc
     1741 gcggtcgatg ccgccacgga ggttctaccg gtttccggct cgcgcgaggc cttgttctcg
     1801 ctggcgcaga ccgtgatcga cagccgcagc accggtgaac cgcccgtggt cgtctgcccg
     1861 aatccgttct atcagatcta cgagggcgca gccttgctgg ccggcgccga gccgtacttc
     1921 gtgaacagca atccggcgcg caatttcgcc tgtgattacg cagccgtccc cgacgccatc
     1981 tgggcacgca cccaattgct ctacgtctgc tcgcccggca acccgaccgg cgccgtgctg
     2041 acgctcgacg actggcgcga gctattcgca ctctcggatc gccacggctt cgtgatcgcc
     2101 tccgatgaat gctattccga gatctatttc aacgaagcca cgcccccgct gggcggcctg
     2161 gaagccgcgc acaagcttgg ccgcggcttc gaacggctgg tgatgctgtc gagcttgtcc
     2221 aagcgctcga acgtgcccgg catgcgctcg ggttttgtcg ccggggatgc gtcgatactc
     2281 aagcaattcc tgctctaccg cacctatcat ggcgcagcac tctcgcccat gttccaggca
     2341 gcaagcgtcg ttgcgtggaa agacgaagcg catgtgcgcg acaaccgcgc gctgtatctg
     2401 aagaaattta cgaccgtcac gcccatgctc gccgaggtac tcgacgtccg tctgcccgac
     2461 gccgcgttct atctgtgggc gaacgtggcg ggcaccggcc tcaccgacac cgagttcgcc
     2521 gcccgccttt acgccgacta taatgtgacg gttttgccgg gctcgtacct ggcgcgcgac
     2581 gcccacggca cgaatcccgg cagcggcttc attcgcattg cgctggtcgc agatgtcgac
     2641 gaatgtgtgg aaggcgcacg gcggatcgtc gaattttgca gcacgctcac acagcgtcgg
     2701 ccagcacagt aacccctcct taaatcgcag cactcactta agtcacgacc atgtcgcaac
     2761 aacttcagca gatcatcgat accgcctggg acaaccgcgc cgagctgtcg ccgaaatcgg
     2821 cccccgccga cgtgcgcgac gccgtcgctc acgccatcga gcaactcgat aaagggctgg
     2881 cgcgcgttgc cgaaaagcag aacggcgaat gggtggtcaa tcaatggctg aagaaagcgg
     2941 tgttgctgtc gtttcgcctg gaagacaacg cgccgatgcc cgctggcgga tatagccagt
     3001 tctacgacaa agtgccgtcg aagttcgcca attacacggc tgaagatttt gctgcgggcg
     3061 gcttccgcgt cgtgccgccg gccatcgcgc gccggggtgc gtttatcgct aaaaacgttg
     3121 tgttgatgcc gtcgtacacg aacatcggcg cgtatgtcga tgaaggcacg atggtcgata
     3181 cctgggccac cgtcggttcg tgcgcgcaga tcggcaagaa cgtgcatttg tcgggcggcg
     3241 tgggcattgg cggcgtgctg gaaccgctgc aggcaaaccc ggtgatcatc gaagacaact
     3301 gctttatcgg cgcgcgttcg gaagtggtgg aaggcgtgat cgtggaagag aattcggtca
     3361 tctccatggg cgtgtatctc ggtcagagca ccaagattta cgaccgcgag acgggttcgg
     3421 tcacgtatgg ccgcattccg gcgggctcgg tggtggtcgc gggcaacctg ccttcgaagg
     3481 acggttcgca cagcctgtac tgcgcggtga tcgtgaagaa ggtggacgca aaaacgcgcg
     3541 ccaaggtcgg tttgaacgag ttgctgcgag gcgattgatc catggccgcg aaaaagatcg
     3601 tcgtgtatgg gattccgaat tgcgacaccg tgagaaaagc acgcgtgtgg ctggaagaac
     3661 atgacgtgcc gttcgagttc tacgacttca agaaagccgg ggtatcgacg ttcttgttgc
     3721 aggactggtt gaaggacgtc acgctcgacg aactgatcaa ccggcgcggc acgacctggc
     3781 gcggcctgtc ggacacctac aaggacgaag ccggctccac ggccggtgcg atcgcgttga
     3841 tgatccacaa gccgtcgatc atcaagcggc ccgtgctcgt ggtcaacggc cgcgtgaaat
     3901 cgctcggttt cgatgccgat aagtacgaaa cgctgttcgt ttagagtctg gaatttaagc
     3961 gcagcatcgc gacgccgact gatgacgacg gcgcgaatct tgatccctgc cggccgccgc
     4021 gccggcattt ttattgaaag tggctcgaat ccatgtccgg cacccttctc ctctcggaac
     4081 aactcatcgc acgcgcgtcc gtcacgcccg acgaccagca ttgccagaac ctgttgatcg
     4141 agcggttggc ggcactcggc tttgagtgcg aaacgatcgc gtccggcggc gtcaccaatc
     4201 tctgggccgt caaacgcggc acggatggca ctgacggcaa gctgctcgcg ttcgccggcc
     4261 ataccgacgt tgtgccgacg ggtccgctgg aacaatggac gtcgcccccg ttcgtgccga
     4321 cccaccgcga cggcaagctg tacggtcgcg gggcagcgga catgaaaacg tccatagcag
     4381 cgttcgttgt gtcgagcgaa gagttcatcg cggcgcaccc ggcgcatcgc ggctcgctcg
     4441 cattcctgat caccagcgac gaagaaggtc ctgccaccga tggcaccgtc aaagtgatcg
     4501 aggcgttgaa agcgcgtggc gagcggctgg actactgcat tgtcggtgag cccacgtcga
     4561 gcactacgct cggcgacatg gtcaagaacg gccggcgcgg ttcaatgtcg ggcaagctca
     4621 ccgtgaaagg cgtgcaaggt cacattgctt atccgcatct cgcgaagaat cccattcatt
     4681 tgctcgcgcc cgcgctggct gaactggtct cgacgcattg ggacgacggc aacgactatt
     4741 tcccgccgac cacgtggcag gtgtccaacc tgcatagcgg cacgggcgca acgaacgtga
     4801 tcccgggtca catcgagttg atgttcaatt tccgcttttc cacggcgagc acggtggaag
     4861 gactgcaaag ccgcgttcac gcgatcctcg ataaacacgc gctggaatac gatctcgcgt
     4921 ggagcgtcag cggcctgccg ttcctcacgc cgcgtggcac gttgtcgaac gcgctggaac
     4981 aagccatcct cgatgaaacc ggcgtgcgca ccgaactgtc cactacgggc ggcacctcgg
     5041 atgggcgctt tattgctcgc atctgcgaac aggtggtcga gttcggaccg ccgaacggca
     5101 gtattcacaa gatcgacgag cacgtggccg tcgcgtttat cgaaccgttg aaaaacgtct
     5161 atagtcgcgt gcttgaaacc ctgcttgcct gatccgaccc actcttataa ggagcctgcg
     5221 atggcgcttc ccttcaccac cgttcgcgat ctgctgcgtt tcgctgtctc gcgtttcact
     5281 gcggcagact tgtcgtttgg ccacggttca tcgaatgcat tcgatgaagc cgcgtacctt
     5341 gtgctgcata gcctgcactt gccgctcgac acactcgacc cgtttctcga cgcacgcctg
     5401 ctcgacaccg aaatcgacgc catcatgaaa gtgatcgagc gccgggcgac ggatcgcgtg
     5461 ccggcggcgt acatcacgaa cgaagcgtgg atgcacgggc accgtttcta cgtggatgag
     5521 cgcgtgatcg tgccgcgctc gtttattgga gagttgctgc aggatggact gcagccctat
     5581 gtgcaggatc ccgacgaagt gtcgcgcgtg ctggaactct gcacgggctc cggctgcctc
     5641 gcgattctcg cggcgcaggc gttccagaat gcggacattg atgctgtcga tatatccgcg
     5701 cccgcgctgg aagtcgcgca taagaacgtg gacgactacg acctggattc gcgcgtcgcg
     5761 ttgtacgagg gcgatctgtt cgcaccgctg cccgttggcc gttatgaggt catcatcacg
     5821 aatccgccgt acgtcaacgc gctcgccatg cagaccctgc ccgctgaata ccgccacgag
     5881 ccggaactcg cactggcggg cggcacggac ggcatggata tcgtgaagcg gattgtgggt
     5941 gaagcgcgca agtggctgac cgaagacggc gtgctcgtgg tcgaaatcgg caatgagcgg
     6001 gccaacgttg aagccacgct cggcggcctc gatattgtct ggctctcgac cagcgccggc
     6061 gacgacaacg tgttcctcat ccaggcagcc gacttgccgg gctgacggcg caactctcga
     6121 ctactcgtat taccaggcac cgcttacatg cacttcgagt ggcaggactg gcttcatctc
     6181 ggcacgtttg tgatgatcgc ccatttgctg ggcgcggcgg ccgcgtgcca cgcgg
//
LOCUS       DATGBK010001166         1931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_269007, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001166 DATGBK010000000
VERSION     DATGBK010001166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269007"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VKJ77_16285"
     CDS             complement(<1..276)
                     /locus_tag="VKJ77_16285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013341805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC46880.1"
                     /translation="MTEQITYRSFTGDDIAAAHALTVELKWPHRADDWRFVVQAGAGF
                     VAEAADGVIGTALYWTYGTERASLGMVIVSPAWQGRGIGKRLMELVLE"
     gene            626..>1931
                     /locus_tag="VKJ77_16290"
     CDS             626..>1931
                     /locus_tag="VKJ77_16290"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC46881.1"
                     /translation="MDSFDPAAVTVRSGHFIGGEYVDEGARRIEVARPSDGVVYASVP
                     LADAEMINRAVENAWQAFRTSGWRTMPPRERARILRRFADLIAADVDTLGPLEALGST
                     RPIRDATGWDVPFTAEGIRFYAEFADKIGGDVAATDHDHLGMTIAEPYGVIGAIAPWN
                     FPLVMASWKIAPALAAGNAVVLKPSEMTPFSVLRLAELAISAGIPAGIFNVVQGDGRT
                     TGDALVRHPKISKVTFTGSTRTGAAIMAACAETGTKPVTLELGGKSPQIVFADAPRLD
                     AVARRIAGAISGNAGQVCVAGSRLLVERSLAEPLAERIQAVFSELKAGATWTPGTTLS
                     PIISEPQAARIEAIVGRTLAGGATLHCGGARADGGGAGSFYAPTLLSGVTQQSEAVRE
                     EVFGPVLTLQTFDTEEEALALAQHPDYGLAAGVHTADLGRALR"
BASE COUNT          363 a          652 c          562 g          354 t
ORIGIN      
        1 ttcaagcacc agttccatca gccgcttacc aatcccccgg ccctgccacg ccggcgacac
       61 aatcaccatc cccagcgacg cgcgctcagt cccgtaagtc cagtacaacg ccgtgccgat
      121 caccccgtcc gctgcctcgg cgacaaaccc cgcgcctgcc tgcacgacga aacgccagtc
      181 gtccgcccga tgaggccact tcagttcaac ggtcaacgca tgcgccgcgg caatatcgtc
      241 gccggtaaag gatctatagg taatttgttc ggtaattcgt tcgttgactt gctcggacac
      301 gccgacctcc ctcgatggct ttcacttcag ccgctcagca acccctcacc aggccttaat
      361 caagctcaaa tcaagctcag gtttcacgcc gccactctcg catcccacaa acgacgtggc
      421 taggacgatc ttttcatgaa aggacgcgga agttgcgcca cacgaacttc aatgcaaaac
      481 ggcatgtcgg cgccctcata acgcgtgtga tctgctgagc cactgttttt gtcgacgata
      541 aattttgcac ggctagccct acgatttcat aaggtcgcgc agcatccgcg gccgctactg
      601 gtactgctac tcaaaggacc ttcatatgga tagcttcgat cccgccgccg tcaccgtgcg
      661 cagcggccat tttatcggcg gcgaatatgt ggatgaaggc gcacgccgca tcgaggtcgc
      721 gcgcccgtcg gacggcgtgg tgtatgcatc ggtgccgctc gcggacgcgg agatgatcaa
      781 ccgcgcggtc gagaacgcat ggcaggcgtt ccgtaccagc ggctggcgaa ccatgccgcc
      841 gcgcgaacgc gcccggatct tgcgccgttt tgccgatctc atcgcagccg atgttgacac
      901 tctaggccca ctggaagcac tcggttcaac ccgcccgatc cgcgatgcaa ccggctggga
      961 cgtgcctttc accgccgaag gcatccgctt ctacgcggag ttcgcagaca agataggcgg
     1021 cgacgtggct gcaactgatc acgatcacct cggcatgacg atcgcagaac cctatggcgt
     1081 gatcggtgct attgcaccgt ggaatttccc gctggtgatg gcctcgtgga agatcgcacc
     1141 ggcgctcgct gcaggcaatg ctgtcgtcct gaagccctcc gaaatgacgc cgttctcagt
     1201 gttgcggctc gccgaactcg ctatcagcgc cggcatccct gcgggcatct ttaacgtcgt
     1261 tcaaggcgat ggccgcacga ccggcgacgc actcgtgcgt catccgaaaa tctccaaggt
     1321 cacgttcacc ggttccacgc gcacaggcgc cgccatcatg gccgcatgcg ccgaaacggg
     1381 aaccaagccg gtcacgctgg aactgggcgg caaaagcccg caaatcgttt tcgccgatgc
     1441 accgcgcctc gatgctgtcg cacgccgtat cgccggggcc atttccggta acgcaggcca
     1501 ggtgtgcgtc gcgggttcgc ggctgctggt cgagcgctcg ctcgcggagc cgctggccga
     1561 acgcatccag gctgttttca gcgaactgaa agcgggtgcg acctggacgc ccggcacaac
     1621 gctttcgccg atcatctcgg aaccgcaggc ggcgcgcatt gaagcgattg tcggacgcac
     1681 gctcgccggc ggcgcgaccc tgcattgtgg cggcgcacgg gccgatggcg gcggtgccgg
     1741 ctcgttttat gcgccgacgc tactgagcgg cgtgacgcag caatccgaag cggttcgcga
     1801 ggaagtattc gggcccgtgc tgaccctgca aaccttcgac acggaagaag aagcgctcgc
     1861 gcttgcgcag caccccgact atggtctcgc cgccggcgtg catacggccg acctgggccg
     1921 tgcgctgcgg c
//
LOCUS       DATGBK010001167         1697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_152666, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001167 DATGBK010000000
VERSION     DATGBK010001167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152666"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1697
                     /locus_tag="VKJ77_16295"
     CDS             <1..>1697
                     /locus_tag="VKJ77_16295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HMC46882.1"
                     /translation="QRFAFDGATGSSDALALARYHLAFREKVPLLVVMCASAVDSQRL
                     AAEIPFFAPDARVRLLPDWETLPYDTFSPHQDLVSARLATLHDLGEGRCDILLVPATT
                     ALYRMPPASFLAAYTFSFTQGERLNEAKLKSQLTLAGYEHVSQVVRPGEYCVRGSLLD
                     LYPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEPARTAFR
                     SRWREVFEGDPSRSSIYKDIGNGVPAAGIEYYLPLFFDETATLFHYLPQDAQLAFVGD
                     MDAAIKRFTNDTRQRYNFLSHDRERPLLEPQRLFLSDDDFFSFAKPFAQIKFPATPEG
                     GWAVPLPGLAIDRHAEEPLLALRHYLEQTPNRVLFATESAGRRETIQQLLSDNGLRAS
                     LDDTFQEWLTGDAKFSLGVAPLANGFALPGEGISIITETELYGQLTRRAGRRRQEQAS
                     NVDSMVRDLSELKIGDPVVHTQHGIGRYMGLVSMDLGEGETEFLHLEYQNESKLYVPV
                     AQLHVISRYSGADPESAPLHALGSGQWDKAKRKAAQQIRDTAAELLNLYARRALREG"
BASE COUNT          300 a          556 c          515 g          326 t
ORIGIN      
        1 cagcgctttg ccttcgatgg cgccaccggt tcctccgacg ccctcgctct ggcacgctac
       61 cacctggctt ttcgcgaaaa agtcccgtta ttggtcgtca tgtgcgcgag cgcggtcgat
      121 tcgcaacgtc tcgcggccga aattccgttt ttcgcgccag acgcacgggt aaggcttctg
      181 cccgactggg aaacgctgcc ttacgacacg ttttcgcccc accaggacct ggtttcggca
      241 cggctggcga cgctgcacga cttgggcgaa ggccgctgcg acatcctgct cgtgcccgcg
      301 acgaccgcgc tgtatcgaat gccaccggca tcgtttttgg ctgcgtatac gttttcgttc
      361 acgcaaggcg agcggctgaa cgaggcgaaa ctgaagagcc agttgacgct ggccggctac
      421 gaacatgtga gccaggtcgt gcgccctggc gaatattgcg tgcgtggttc gctcctcgac
      481 ctgtatccga tgggctcgcc gctgccgtac cggatcgatt tattcgacga tcaggtcgat
      541 tccatccgcg ccttcgatcc cgacacgcag cgcagcctgt atcccgtgcg cgatgtgcgc
      601 ctgctgcccg gccgcgaatt tcccttcgat gaacccgcgc gcaccgcctt ccgcagccgc
      661 tggcgcgagg tgttcgaggg cgatccaagc cgctcatcga tttacaagga catcggcaat
      721 ggcgtgccgg cagcggggat cgagtattac ctgccgctgt tcttcgacga aaccgccacg
      781 ctgttccatt acttgccgca agacgcgcaa ctggcgttcg tcggcgacat ggacgcggcc
      841 atcaagcgct tcacgaacga tacgcggcag cgctacaact tcttgtcgca tgatcgcgag
      901 cggccgctgc tcgaaccgca gcgcctgttt ctcagcgacg acgacttttt ctcgttcgcc
      961 aaaccgttcg cgcagatcaa gtttccggcc acgcctgagg gcggctgggc ggtgccgcta
     1021 ccgggcctgg cgatcgatcg ccacgccgaa gaaccgttgc tcgcgctgcg tcattatctg
     1081 gagcagacgc cgaatcgcgt gttgttcgcg accgaatccg ccggacgccg cgagacgatc
     1141 cagcaactgc tctccgataa cggcctgcgc gcgtcgctcg acgatacgtt ccaggaatgg
     1201 ctcactggcg acgccaaatt ctcgctgggc gtggcaccgc ttgcgaacgg ctttgcgctg
     1261 cccggcgaag gcatctcgat catcacggag accgagctgt acggacagct cacgcggcgc
     1321 gccggacgcc gtcgccagga gcaggcaagc aacgtcgatt cgatggtgcg cgacctctcc
     1381 gagctgaaga tcggcgatcc ggtcgtgcat acgcagcatg gtattgggcg ctacatgggc
     1441 ctggtatcga tggatctggg tgaaggcgaa accgagttcc tgcatctcga ataccagaac
     1501 gaaagcaagc tgtacgtgcc ggtcgcccag ttgcacgtga tctcgcgcta cagcggcgcg
     1561 gatccggaaa gcgcgccgtt gcacgcgctt ggttccggtc agtgggataa agccaagcgc
     1621 aaggccgcac agcagatccg cgataccgcc gccgaactcc tcaatcttta cgctcggcgc
     1681 gcgctgcgcg agggcca
//
LOCUS       DATGBK010001168         1653 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_291945, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001168 DATGBK010000000
VERSION     DATGBK010001168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291945"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1018
                     /locus_tag="VKJ77_16300"
     CDS             <1..1018
                     /locus_tag="VKJ77_16300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46883.1"
                     /translation="YKTLSKRYANIMLEFSLACQITDRTRALVDGRVSVGGCRINFVH
                     GPAEELFQRAFRHEEFDISELSLGTHLLTTARGQSRYIGVPAFVSRSFRHSAIYVRAD
                     HGINSAEELRGRKVGVPDFQQTAGVWVRGFLDDEHGVRTRDVHWFTGGLEQAGRQVRM
                     PLDLPPDISIVPIDSDATLSKLLDSGDIDAIIAPRPPSCFGHNPNVRRLFPHFREAEE
                     AYFTKTRLFPLMHIIGIRRSLVERYPWLPVNVFAAFVKAKEAAMTELTITDTLRITHP
                     WINAEVERVKALMGDDYWRYGLDANRPELAALQRYARTDGLIGQEVPLEQLFAATTFD
                     GFKF"
     gene            1072..>1653
                     /locus_tag="VKJ77_16305"
     CDS             1072..>1653
                     /locus_tag="VKJ77_16305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter
                     substrate-binding protein"
                     /protein_id="HMC46884.1"
                     /translation="MGKTGSTRFDRRSAALFSCAVLLAVNSIAARAADAWQPHRPVEI
                     VVPSAPGGGLDLVGRTLQSVIQQDKLSSKPVTVINRPGGGGTVGIAYINSHPGDGHYV
                     SVQALPLITNRITGISTVGVDDVTPLAVFVTEPVVFSVAASGPIKTGKDLIAMLQKDP
                     SAVSMAVSSSPGGQSHDAAALVLKASGQDPKKLK"
BASE COUNT          322 a          485 c          513 g          333 t
ORIGIN      
        1 ctataagacg ttgtcaaaga ggtatgccaa tatcatgctt gagttttcgt tagcatgcca
       61 aattactgat cggacccggg cgttggtcga cggccgggtg agtgtcgggg gatgtcgaat
      121 taactttgtt cacggtcccg cggaggagct gtttcagcga gcgtttcgtc atgaggagtt
      181 cgacatctcg gagctgtcgc tcggcacaca cctgctcacc acggcgcgtg gccagagccg
      241 ctatatcggc gtgccggctt ttgtgtcgcg gtcgtttcgc cactcggcca tctatgtgcg
      301 cgccgatcac ggaatcaatt cggcagaaga gctgcgcgga cgcaaggtcg gcgtgccgga
      361 tttccagcag accgcggggg tgtgggtgcg cggttttctc gacgacgaac acggtgtgcg
      421 tacacgcgac gtgcactggt tcaccggggg tctcgaacag gcgggacgcc aagtgcgcat
      481 gccgctcgac ttgccgccgg acatcagcat cgtgccgatc gattcggacg cgacactttc
      541 aaaactcctc gattccggtg atatcgacgc gatcatcgcg cccaggccgc cgtcctgctt
      601 tggccacaat ccgaatgtcc ggcggctgtt cccgcatttt cgcgaagcgg aggaggcgta
      661 tttcacgaag acgcgtctgt ttccgctcat gcacatcatt ggcatccgcc gttcgctggt
      721 cgagaggtac ccctggttgc cagtgaacgt cttcgcggct ttcgtgaaag cgaaggaggc
      781 cgccatgacc gaactgacca tcacggacac gctgcgcatt acgcatccgt ggatcaacgc
      841 cgaggtggaa cgggtcaagg cgctgatggg agatgactat tggcgctacg gacttgacgc
      901 caatcgcccc gaattggccg cactgcagcg ctatgcgagg accgacgggc tcatcggtca
      961 ggaggtgccg ctcgagcagc tctttgctgc aaccacgttc gacggattca aattctgagc
     1021 cgcgatttga gccgtgaaac gtctatcaaa aaacaatcag gagacgatgt aatgggcaag
     1081 actggtagta cccgcttcga tcggcgcagc gcggcgctgt tctcatgtgc agtgcttctc
     1141 gccgtcaact cgatagctgc gcgcgccgcc gacgcatggc agcctcatcg gcccgttgag
     1201 atcgtggtgc cgagcgcgcc cggcggcggg ctggatctcg taggacgcac gctgcaaagc
     1261 gtcatccagc aagacaagct ctcaagcaag cccgtcaccg tcatcaaccg tccgggcggc
     1321 ggcggtacgg ttggcattgc gtacatcaac tcgcatcctg gagacggcca ttacgtcagc
     1381 gtgcaggcac taccgctcat cacgaaccgc atcaccggta tcagcacagt aggtgtagac
     1441 gacgtgacgc ctttggccgt cttcgtgacc gagccggttg tcttttctgt cgctgcgtca
     1501 gggccgatca agacgggcaa ggatcttatc gcgatgctgc aaaaggatcc ctcggcggta
     1561 agtatggcgg tgtccagctc gccgggtggc caaagccatg acgccgccgc cttggtactg
     1621 aaggcgtcgg gacaggaccc aaagaagctg aag
//
LOCUS       DATGBK010001169         4706 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_269067, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001169 DATGBK010000000
VERSION     DATGBK010001169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4706
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269067"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VKJ77_16310"
     CDS             complement(<1..551)
                     /locus_tag="VKJ77_16310"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC46885.1"
                     /translation="MTSTSPSPYLAFKQTALQYPDNDFLHIPASARKHYAPPEPLTLK
                     YSETLARIDEQIERYRDAGYRAGMRVALLLENRPEFFFHFFALNALGISVVPLNADSR
                     PHEIAYVAEHSEIVLAVGIDTTQPLLQAALQDKVAVADANTSALPRIESAGRIVTTPS
                     LDDECAILYTSGTTGKPKGCILD"
     gene            complement(655..1761)
                     /locus_tag="VKJ77_16315"
     CDS             complement(655..1761)
                     /locus_tag="VKJ77_16315"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC46886.1"
                     /translation="MTELTANPMRLAHAFKLGVFAANADRGLSFTTVPEQWRATWDDV
                     QRAAIAADEGGMDFFLPIARWRGFNGTTHVREWSFETFTFAAALAAVTRRIALFSTVH
                     VPLVHPLYAAKALATIDHISHGRVGLNIVCGWNPDEFDMFGVKLNPEAYKQAAEWSEI
                     LMKLYTSAEPFDFEGEFYHLKGAISRPVPLQAPRPVTMNAAFGAPGRDFAAKYCDYLF
                     TTFSELDAGREHVADIRGRGQAAGRDIGVYTVAHVVCRETAQEAQDYYHRYSVEYTDE
                     AALDYHMKQKKGFSNSHDDRAFTEYRQRFAAGTGSFPLVGTPVHIVDELIKIHESGFA
                     GAALTFVNYADELPFFCEQVMPLMREAGLRNDSD"
     gene            2401..3522
                     /locus_tag="VKJ77_16320"
     CDS             2401..3522
                     /locus_tag="VKJ77_16320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC46887.1"
                     /translation="MKTPFIAASLAALCASGSVCAQSSVTLYGIIDEGLTFSNNQLGE
                     KAYQMQSGISQGSRWGLQGAEDLGGGLSAIFRLENGFDINSGKLGQQGREFGRGAYVG
                     LSSKTLGTVTLGRQNEMMGDYVGLYTANGNWGILFPHPGDLDNTGIDFRINNAVRYTS
                     PIISGIQASALYGFGNVAGATNRDAVKSVGVKYAGGPIALAAAYTSIDHPAEAVPEGV
                     WTATNAVDGNYGLAASKYQSFGISGQYSFGNAKISADYTNTKFLGLDPTVGANISGHV
                     SFNIFEVVASYYVTPSLQLGTGYSYTEGEVSATSKKPKYHNVDAIVDYYLSKRTDTYL
                     QATYMHAAGDAQYADLAPVLQRSSTPNQIEVRLGLRHRF"
     gene            3619..>4706
                     /locus_tag="VKJ77_16325"
     CDS             3619..>4706
                     /locus_tag="VKJ77_16325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46888.1"
                     /translation="MDSFEIDAKRRQWLLGSLAAGAGLILPWDFARAQGSASDEVLNI
                     AYISDVPTWDPTAITVPQAQSIYETVFDSPLRYSPTLKLEARQITAWKWQDKTDQRLE
                     VTLRDDILFHDGSKLTTADLKYSLHDRPSADKKLAVGGMFQALKDVEIISPTRAVLVY
                     AKPTPAAPIYLAFLAGYILPKAYMEKVGIDGFLAKPIGAGPYKLVDYQRGSRIVLEAF
                     DKYWGGVPAIKNVTFQITTEPSARVAAVESGRAGVAVQIPLREAQRLAKTPGITTKIY
                     PYSEIYMLRMPNYVKPFDDENVRAAMHYSIDTAALSKAFYGGEAVPLSVTATPGSPAD
                     VPSFKIGFDPQRAIAALAKSGYGPNKPV"
BASE COUNT         1015 a         1373 c         1393 g          925 t
ORIGIN      
        1 ttgtcgagaa tgcagccttt gggcttgcca gtggttcctg acgtgtaaag aatggcgcat
       61 tcatcgtcca gggagggtgt cgtcactatg cggccagcgc tttcgatcct cggcagcgcg
      121 gaggtgtttg catcggctac ggcgactttg tcctgaagcg cggcctgcag aagcggctgc
      181 gttgtatcga tcccaaccgc cagcacgatc tcgctgtgtt cagccacata cgctatttca
      241 tgcgggcgcg agtcggcgtt gagcggcacc acactgatgc cgagggcatt gagcgcgaag
      301 aaatgaaaga aaaattctgg ccggttctca agcaataacg ccacgcgcat gcctgcgcga
      361 taacccgcgt cgcggtagcg ctcgatctgc tcatcgattc gcgccagcgt ttcgctgtac
      421 ttcaacgtga gcggttcggg cggcgcgtag tgcttgcgag cggaggcggg aatatgcaga
      481 aaatcattgt ccggatactg aagtgcggtt tgcttgaacg cgaggtaagg cgagggggat
      541 gtcgatgtca taaggcgaga gtgatgtaac gcattcggac gagcggtttc tgaacgagcg
      601 agtgacgccc gttcaggcaa gcgcagtatt caaataaatc ggataacgag agggtcagtc
      661 tgagtcgttg cgcaaacccg cttcgcgcat caggggcatg acttgctcgc agaaaaaagg
      721 cagttcatcg gcgtaattca cgaaggtcag cgcggcgccc gcgaacccgc tttcatggat
      781 cttgatgagt tcatccacta tatgaaccgg ggtaccaact agcggaaagc tcccggtccc
      841 ggctgcaaaa cgctgccgat actcggtgaa cgcgcggtcg tcatgactgt tgctgaagcc
      901 cttcttctgc ttcatgtgat agtcgagcgc ggcttcgtcg gtatattcca cggaataacg
      961 gtggtagtaa tcctgcgcct cttgcgccgt ctcgcgacac accacatgcg ccaccgtgta
     1021 cacgcctatg tcgcgtcccg ccgcttgtcc acggccacga atatccgcga catgttcgcg
     1081 gccggcgtcg agttccgaaa acgtggtgaa cagatagtcg caatactttg ccgcgaagtc
     1141 gcgtcccggc gcgccgaacg cggcgttcat cgtcaccgga cgtggcgcct gcaacggcac
     1201 gggtcgtgaa atagcacctt tcaaatgata gaactcgccc tcgaaatcaa agggctcggc
     1261 cgacgtgtag agcttcatca gaatctcgga ccattccgct gcctgtttat aggcctccgg
     1321 attcagcttc acaccgaaca tgtcgaactc atccggattc catccacaca cgatgttcag
     1381 gcccacgcgg ccatgactga tgtggtcgat ggtcgccagc gccttcgccg cataaagcgg
     1441 atgcacgagc ggcacgtgaa ccgtcgagaa caacgcaatg cgacgcgtca ccgctgcaag
     1501 cgctgcggca aacgtgaagg tctcgaacga ccactcgcga acatgcgtgg tgccattgaa
     1561 gccacgccat cgcgcgatgg gcaggaaaaa gtccatcccg ccttcatcgg cagcaatggc
     1621 ggcacgctgc acgtcgtccc acgtcgcgcg ccattgctcg ggcacggtcg tgaacgagag
     1681 gccacgatcc gcgttggctg caaagacgcc gagcttgaac gcgtgagcga gccgcattgg
     1741 attcgcggtg agttcggtca agacatgctc cttgagatcg agggcgttta ttgaagaata
     1801 ctgaattcag aaaaatcgca tgtcaaggct cacatgcaat acgttgcgct tgtgcgaaaa
     1861 ccgatcgtag tggggcacgc acgctgcaag gaaagttcgc cgcggtgcag cgatgttgct
     1921 tggcgtccct ccacgcatca aagccggtca tgtgattcag agtagcaagg acgcttgatc
     1981 tcacgcaagc gcggtttagg tgcaaaaaat gccttacacg cggtacttcc gttggatcga
     2041 tgccgcaatc acgtcgcctc ggcggctagc gaatgccgcg tctcgcatgt tctgtttcat
     2101 ccaaattgcc tcaccaggtg cgcacaaccc cgcgccatcg actgagcatc tcagcccttc
     2161 ctgcaccttt gcccgaaaaa caattttggc aagctcttga cgtccgaatt ttactgaaat
     2221 aatctgaatt cagaatgtta atgacagcac gaaacattct cgcgcattga cgctgccctc
     2281 caagggatct gcgtggcgcg gcgagttcta ccccgaagcc cgaagtctga cgtcacgaac
     2341 aaacgaaatc acgtcatcaa gaaatctcgt catccaccca tgatctttaa cggaacccaa
     2401 gtgaaaactc cttttattgc tgcatcgctc gccgcgttgt gcgcgagtgg ctctgtgtgc
     2461 gctcagagca gcgtgacgct gtacgggatc atcgacgaag gcctgacctt ctcgaacaat
     2521 cagcttggcg agaaggcata tcagatgcaa agcggcattt cgcagggcag ccgctggggg
     2581 cttcaaggtg cggaggatct ggggggaggg ttgtcggcga tcttccggct cgagaacggt
     2641 ttcgacatca actcaggcaa gctggggcaa caaggccgcg aattcggccg cggcgcttac
     2701 gtgggtttgt cgagcaagac gctgggaacg gtcacgctcg ggcgtcaaaa cgaaatgatg
     2761 ggcgactacg tgggcctcta caccgcgaac ggcaactggg gcatcctgtt cccgcatccg
     2821 ggtgatctgg acaacaccgg catcgacttt cgtatcaaca atgctgtccg atacacctcg
     2881 ccgatcatct cgggcatcca ggcctcggcg ttgtacggat tcgggaacgt agcgggcgcg
     2941 accaaccgcg acgcggtcaa gtcggtcggt gtcaaatacg caggtggtcc gatcgcactg
     3001 gcagcggcgt atacgtcgat cgatcatccg gctgaagcgg tgcccgaagg cgtgtggacg
     3061 gcgaccaacg cggtcgatgg caactatggg ctggctgcgt cgaagtacca gtcgttcggt
     3121 atcagcgggc agtattcgtt cggcaacgca aaaatcagtg ctgactatac gaacacgaaa
     3181 ttcctcgggt tggacccaac agtcggcgcc aatatcagcg gccatgtgtc gttcaacatt
     3241 ttcgaagtcg tggcgagcta ctacgtgacg ccgtccctgc aactcggcac cggatacagc
     3301 tacacggaag gtgaggtctc ggcgacgtcg aagaagccga agtatcacaa cgtcgatgcg
     3361 atcgtggact actacctgtc gaaacgtacc gatacctact tgcaggccac ttacatgcac
     3421 gccgcgggtg acgcccaata cgctgatctc gcgccggttt tgcagcggtc aagcacgccc
     3481 aatcagattg aagtgcgatt ggggctgcgc catcgtttct gaccgtcaat aattcatcct
     3541 cacgcgtgct gcgaatcaag gtcgcagcac gctttcgtgc atcttcatcc ggcgggatgc
     3601 cgggacacag gagtaccgat ggacagtttc gagatcgacg cgaagcgcag gcaatggttg
     3661 ctaggctcgc tggccgcagg ggctggcctg atattgccgt gggacttcgc gcgcgcacag
     3721 ggctcggcaa gcgatgaggt attaaacatt gcgtacatct ccgacgtgcc gacctgggac
     3781 ccgacggcga tcacggtgcc gcaggcgcaa tccatctacg agaccgtctt cgattcccca
     3841 ttgcgctact cgccgacgct gaaactggaa gcgcgccaga tcacagcatg gaagtggcag
     3901 gacaagaccg accagcggct cgaggtcacc ttgcgcgacg acatcctgtt ccatgacggc
     3961 tcgaagctga cgaccgccga cctgaaatac agccttcacg atcgtccgtc cgccgacaag
     4021 aagctggcag ttggcggcat gttccaggcg ctgaaggacg tcgagatcat ttcgcccacg
     4081 cgcgccgtgc tggtgtatgc caaaccgacg ccggccgcgc cgatctatct cgcgttcctg
     4141 gcgggttata tcctgccgaa ggcgtacatg gagaaggtcg gcatagacgg tttcctggcg
     4201 aagcccattg gcgccggacc ctacaagctg gtcgactatc agcgcggttc gcgcatcgtg
     4261 ctcgaagcct tcgataaata ctggggcggc gttccggcca tcaagaacgt cacgttccag
     4321 atcacgacgg aaccgtcggc gcgcgtggcg gcggtcgaat ccggccgcgc cggcgtggct
     4381 gtgcagattc cgctgcgcga ggcgcagcgc ctggcgaaga cgccgggcat cacgacgaag
     4441 atctatccgt acagcgagat ctacatgctg cgcatgccga actacgtcaa gccgttcgac
     4501 gacgaaaacg tgcgcgcagc catgcattac tcgatcgaca ccgccgcgct gtccaaagcg
     4561 ttttacggcg gcgaagccgt gccgttgtcg gtcacggcca cgcccggctc gcctgcggac
     4621 gtaccgagtt tcaagatcgg ctttgatccg caacgtgcga tcgcggcgct cgcaaagtcg
     4681 gggtacggtc cgaacaaacc ggtgaa
//
LOCUS       DATGBK010001170         2097 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_37882, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001170 DATGBK010000000
VERSION     DATGBK010001170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37882"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..194
                     /locus_tag="VKJ77_16330"
     CDS             <1..194
                     /locus_tag="VKJ77_16330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46889.1"
                     /translation="RRSDSASASPLVLSLATGVAVERAERAPRANAHDGPPVVMQYRD
                     IALPRYKTPALNCTYSPAS"
     gene            331..1296
                     /locus_tag="VKJ77_16335"
     CDS             331..1296
                     /locus_tag="VKJ77_16335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HMC46890.1"
                     /translation="MSDLDKKILPLEPLTEHGARRRTALTCMAWAGAGMLWTMNGGVP
                     GSKLIGGTAEAAEVNRHAFSFVQISDSHIGFSKDPNLDPASTLKEAVDKIRTSSEKPK
                     FIIHTGDISHLSKPDEFDTATQIIGSAGLDVHYVPGEHDVLVDDGGSYFERFAKPADP
                     KWYSFDQGGVHFIGLTNVLDLRGGGLGFLGDEQLAWLKQDLHARTSSTPIVVFAHIPL
                     WSLYPQWGWGTDDSAQALSLMKRFGSVTVLNGHVHQVAQKVEGEINFYSALSTAFPQP
                     APGTAAGPGPMKVPADTLRKMLGVRTVNYVPGKAELAIVDTRLSV"
     gene            1326..1697
                     /locus_tag="VKJ77_16340"
     CDS             1326..1697
                     /locus_tag="VKJ77_16340"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HMC46891.1"
                     /translation="MTMPDLRGVWVAKTVAKTMAALCFATALAAAPVFAVEAKPAAIV
                     VIDNFSFSPAQLSVAAGSTVTWENHDDMPHTIVNDATPREFKSAPLDSGEHFSQTFAK
                     PGTYKYFCSIHPHMTGTIVVK"
     gene            complement(1703..>2097)
                     /locus_tag="VKJ77_16345"
     CDS             complement(1703..>2097)
                     /locus_tag="VKJ77_16345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HMC46892.1"
                     /translation="GHAFDFRASAPLGARLDWPHDQLARAGGFDHCYVVGESGKTLKP
                     VVRLYDPGSGRELTMGTNAPGVQFYTGNHLDGIVGRHGQRYGKHAGLCLQAGAFPNQV
                     NMADAGSVIVRPGEPYRQVTWYRLGLQQ"
BASE COUNT          442 a          647 c          614 g          394 t
ORIGIN      
        1 cgcgtcgaag cgattcggcg agtgcttcgc cattggtact ctccctggca accggtgttg
       61 cagtggaacg tgctgaacgt gcgccacgcg ccaacgcgca tgacggaccg ccggttgtta
      121 tgcaataccg cgatattgca ctaccgcgct acaagacgcc ggctctcaac tgtacttact
      181 cgccggcctc ctgatttatt cccgattatg cgaggttatc gaaaaaattt accgggaata
      241 aagccgaggg cctctgagtt tggtggacat ggggaaatgc ttccccactt tgcacagctg
      301 ttttgcatac ccacccacca ggagccgatc atgtccgacc tcgacaaaaa aatcctacca
      361 ctcgaacccc tcacggaaca cggcgccaga cgccgcaccg cactgacgtg catggcatgg
      421 gccggcgccg gcatgctgtg gacaatgaac ggcggcgtgc ccggctccaa gctgatcggc
      481 ggcaccgcgg aggcggccga agtcaaccgt catgcgttca gcttcgtgca gatcagcgac
      541 agtcacatcg gcttcagcaa ggacccgaac cttgacccgg cgagcacctt gaaggaagcc
      601 gtcgacaaga tccgcacgag ctcggagaag ccgaagttca tcatccatac cggcgacatc
      661 agccacctgt ccaagcccga cgaattcgac accgccacgc agatcattgg gagcgccggg
      721 ctcgacgtgc actacgtacc gggcgaacac gacgtgctcg tcgatgacgg cggttcgtat
      781 ttcgagcgct tcgccaaacc cgcggacccc aagtggtaca gcttcgacca gggtggggtg
      841 cacttcatcg gcttgaccaa tgtgcttgat ctgcgtgggg gcggcctggg ttttctcggc
      901 gatgagcagc tagcgtggct gaagcaagac ctgcacgcgc gcacgagcag cacgccgata
      961 gtcgtgttcg cgcacatccc cctctggtct ttgtatccgc agtggggctg gggcaccgac
     1021 gacagcgcgc aggcgctgag cctgatgaag cgtttcggct cggtcacggt gcttaacggc
     1081 catgtgcatc aggttgcaca aaaagttgaa ggcgagatca acttttactc tgcgctatcg
     1141 accgcttttc cgcaaccggc accgggcacg gcggcaggtc ccggaccgat gaaagttccc
     1201 gccgacacac tacgcaagat gctcggcgtg cgcacggtca actatgtccc ggggaaggcc
     1261 gagctggcca ttgtcgacac gcggctcagc gtatgagcgc catcttgaac aagcggagaa
     1321 cgatgatgac aatgcctgat cttcggggcg tatgggtagc gaagaccgtc gctaaaacaa
     1381 tggccgcact atgctttgca acggcgctgg cagcggcacc cgtattcgcc gttgaggcga
     1441 aacctgccgc tatcgtagtg atcgacaact tctcgtttag tcctgctcag ttgtcggttg
     1501 cagcagggtc gaccgtgaca tgggagaacc acgacgacat gcctcatacc atcgtcaacg
     1561 atgcaacccc acgcgaattc aaatcggcgc cgctcgattc aggggagcac ttttcacaga
     1621 cgttcgcgaa gcccggcaca tacaagtatt tctgttcgat ccatccgcat atgacaggca
     1681 cgatcgttgt gaaataaagg ggctattgct gcaagcccaa ccgataccac gtgacttgcc
     1741 ggtacggttc accggggcgc acgatcacgc tgcccgcgtc tgccatgttg acctgattcg
     1801 ggaacgcgcc ggcctggagg cacaggccgg cgtgcttgcc gtaacgctgt ccatgccgtc
     1861 ccacgatgcc atcgagatga ttgccggtat agaactgaac gccgggcgcg ttggttccca
     1921 tcgtcaactc gcggccactg ccggggtcgt agagccgtac gacgggtttg agcgttttgc
     1981 cgctttcacc cacgacataa caatgatcga agccgcctgc acgcgcgagc tgatcatgcg
     2041 gccagtcgag tcgggcgccg agcggagcac tcgcgcggaa atcgaacgca tggcccg
//
LOCUS       DATGBK010001171         2214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_199492, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001171 DATGBK010000000
VERSION     DATGBK010001171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199492"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /gene="fabD"
                     /locus_tag="VKJ77_16350"
     CDS             complement(<1..710)
                     /gene="fabD"
                     /locus_tag="VKJ77_16350"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HMC46893.1"
                     /translation="MKFAFVFPGQGSQSVGMLNAFADHAVVRETVQQASDALGQDLGK
                     LIAEGPVEELGLTTNTQPVMLTAAYAIYRVWEKETGLKPAIVAGHSLGEYTALVVAGA
                     LPFSAAVPLVRFRAQAMQSAVPVGEGGMAAILGLDDDAVRAVCAEASAAGIVEAVNFN
                     APSQVVIAGAKAGVEKACEIAKAKGAKRALPLPVSAPFHSSLLKPASDQLREYLASVD
                     IGVPQIPLINNIDVASVA"
     gene            complement(777..1766)
                     /locus_tag="VKJ77_16355"
     CDS             complement(777..1766)
                     /locus_tag="VKJ77_16355"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010105339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HMC46894.1"
                     /translation="MAQSNLYSRVIGTGSYLPPDRVTNQELAERLAKQGVETSDEWIV
                     ARTGIHARHFAAPDQTTSELALQASRHAIEAADIDPQSIDLIIVATSTPDFVFPSTAC
                     LLQNKLGIKNSGAAFDIQAVCSDFAYAVAVADSLIRGGTHRTALVVGAETFSRILDFN
                     DRTTCVLFGDGAGAVILQASDEPGVLSSALHADGSHANILCTPGNVNKGVIEGSAFLH
                     MDGQAVFKLAVKVLEKVAVEALDKARLTAGDIDWLIPHQANIRIMESTARKLHVPLER
                     MVVTVGEHGNTSAASIPLAFDVAVRDGRIKRGQHVLIEGVGGGFTWGASVIRY"
     gene            complement(1766..>2214)
                     /locus_tag="VKJ77_16360"
     CDS             complement(1766..>2214)
                     /locus_tag="VKJ77_16360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HMC46895.1"
                     /translation="AQMLTDIIREEFSRSLLTKLMALVAMPVLKRFKRRVDPAQYNGA
                     ALLGLRGLVIKSHGSAQAYGFEWAIKRGYDAVKNGVLERLVRAMEENAAPVQQAALGA
                     CADTAGTVVPNQTDPAADPVAPGDNTVAARPLVQPGEPGAALSSKA"
BASE COUNT          417 a          691 c          682 g          424 t
ORIGIN      
        1 tcggcgacgc tcgcgacgtc gatgttattg atcagcggaa tctgcggcac gccgatatcg
       61 acgctcgcca gatactcgcg caactggtcc gacgccggct tgagcagcga cgaatggaac
      121 ggcgccgata ccggcagagg caatgcgcgt tttgcgccct tggccttcgc gatttcgcag
      181 gctttttcaa cgcctgcctt cgcaccggcg atcaccactt gtgacggcgc gttgaagttc
      241 accgcttcca caatccccgc cgccgatgct tcggcgcaga cggcgcgcac agcgtcgtcg
      301 tcgaggccaa gaatggcggc catgccgccc tcgcctaccg gcacggcgct ctgcatggct
      361 tgcgcgcgaa atcgcacgag cggcacagcg gcagaaaacg gcagcgcacc agcgacaacc
      421 agcgccgtat attcgcccag actatgaccc gcgacgatcg ccggcttaag ccccgtttcc
      481 ttttcccaca cgcgataaat cgcgtacgcg gccgtcagca tgacgggttg cgtgttcgtg
      541 gtgagaccca gttcttccac cgggccttcg gcaatcagct tgcccagatc ctggccaagt
      601 gcatcggatg cctgttgcac ggtttcgcgc accacggcgt ggtcagcgaa tgcattgagc
      661 atgccgaccg actgggaacc ttgtcccggg aaaacgaacg cgaatttcat gaggtccttg
      721 ctcgattgga ttgtcaaatg actgacgtgg cgtgacgacg ggggagccgt attcgcttaa
      781 tagcggataa ccgacgcgcc ccacgtgaag ccgccgccta ccccttcgat cagcacgtgc
      841 tggccgcgct tgatacggcc gtcgcgcacg gcgacgtcga atgcgagagg aattgatgcc
      901 gccgacgtat tgccgtgctc gccaacggtt acgaccatgc gctccagcgg cacatgcaac
      961 ttgcgcgcgg tgctctccat gatgcggata ttggcctgat gtggaatgag ccagtcgatg
     1021 tcgccagcgg tcagtcgcgc cttatcgagc gcctcgacgg ccactttttc caggaccttg
     1081 accgctagct tgaataccgc ctgaccatcc atgtgcaaga acgcgctgcc ttcgattacg
     1141 cccttgttca cgttgcccgg cgtgcacaag atgttcgcgt ggctgccgtc ggcgtgaagc
     1201 gcgctggaca gtacgccggg ttcatcggag gcttgcagga tcactgcgcc cgcgccgtcg
     1261 ccgaacaaca cgcacgtggt gcggtcgttg aaatcgagaa tgcgcgagaa ggtttcagca
     1321 ccgacgacca gcgccgtacg atgggtaccg ccgcggatca ggctgtcggc caccgcaacg
     1381 gcgtaggcga agtccgaaca aacagcctgg atatcgaacg cagcgccgct attcttgatg
     1441 ccgagcttgt tctgcaacag gcaagccgtg ctggggaaaa cgaagtcagg cgtggacgtg
     1501 gcgacgatga tcagatcgat cgattgcgga tcgatatccg ctgcctcgat cgcgtgacgc
     1561 gatgcctgca aggcgagttc gctggtcgtc tgatcaggtg cggcgaaatg acgtgcatgg
     1621 ataccggtcc gggcgacgat ccactcatcg ctcgtttcaa caccctgttt tgccagacgc
     1681 tcggccagtt cctggttcgt gacacgatcc ggcggcaagt aactgcccgt tccgatcacg
     1741 cgggaataga gattcgattg agccattatg ccttcgagga tagcgcggca cccggttcgc
     1801 ccggctgcac gagcgggcgg gcagcgaccg tattatcgcc tggggcgacg gggtcggccg
     1861 cggggtcggt ctgattcggg accacggtgc cagcagtgtc agcgcaagcg ccgagcgccg
     1921 cttgttgcac gggagcagcg ttttcttcca tggcgcgcac gaggcgctca agcacgccat
     1981 ttttgacggc atcatacccg cgtttgatag cccactcaaa cccgtaggct tgtgccgatc
     2041 cgtgactctt gataaccagt ccgcgcaagc cgagcagcgc agcgccgttg tactgggcgg
     2101 ggtcgacccg gcgtttaaag cgtttgagaa ccggcatggc gacgagcgcc atcagcttcg
     2161 tcagaagcga tcggctgaat tcctcgcgga tgatgtcggt cagcatctgc gcca
//
LOCUS       DATGBK010001172         1521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_13839, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001172 DATGBK010000000
VERSION     DATGBK010001172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13839"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..447
                     /locus_tag="VKJ77_16365"
     CDS             <1..447
                     /locus_tag="VKJ77_16365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46896.1"
                     /translation="TLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARDLRSQGRTTV
                     EAAMEAARQRLRPILMTSLAFILGVLPLAVSNGAGSSSQHAIGTGVIGGMLTATFLAI
                     FMIPMFFVVISKISHDKGTPQHGHDGDSNGGNGDHGGTATPAKEGH"
     gene            449..>1521
                     /locus_tag="VKJ77_16370"
     CDS             449..>1521
                     /locus_tag="VKJ77_16370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC46897.1"
                     /translation="MLKHSLMAAAVALFAAGCTMAPKYERPAAPVDQTFPTGGIYDKQ
                     PDGASSTSPNASAQAKPAVDIGWRDFFADARLQQIVAIALKNNRDLRVSMLNVAAARS
                     QYQITRAELLPTLDAVGSQTKSRTPRDLSLFNQTISNQYSVGVNASWEIDFFGRIQSL
                     KDQALEQYFALAETRKAAEISLVSQVADQYLTMLSDDDQLTVTRNTLKTADESYRITK
                     LQFDNGVGTELDVRQSEGIQQQAAANLQSQLRLRAQAENALVLLIGEPLPADLPPGLP
                     LDSQNLLTDIPAGLPSDLLTRRPDIVSAEHSLLAANANIGAARAAFFPKISLTGSFGT
                     LAPSLGTLFKPGSAAWSFAPQIS"
BASE COUNT          287 a          439 c          500 g          295 t
ORIGIN      
        1 accttgcgcg ggctggaaaa cgacgtgttc ttccaggtcg gcttgctgac tacggtgggg
       61 ttgtcggcga agaacgccat tttgatcgtg gaattcgcac gcgatttgcg cagtcagggc
      121 aggaccacgg tggaagcggc aatggaagcg gcgcgccagc ggttgcgccc gattctgatg
      181 acgtcgctgg catttattct cggcgtgttg ccgcttgcag tgagtaacgg cgcgggttca
      241 tcgagccagc acgccattgg tacgggcgtg atcggcggga tgttgacggc gactttcctg
      301 gcaattttca tgatcccgat gttctttgtg gtgatcagca aaatcagcca cgacaagggt
      361 acgccgcagc atggccacga cggcgatagc aacggcggca atggtgacca cggcggcacg
      421 gctaccccgg ccaaggaagg acattgagat gctaaaacac tccttgatgg cggcagcggt
      481 cgcgcttttc gcggctggct gcacgatggc gccgaagtat gagcgcccgg cggcgcccgt
      541 cgaccagacg ttcccgacgg gcggcattta cgacaagcaa ccggacggag catcgtcgac
      601 ctcgccaaac gcctcggcgc aagcgaagcc ggcggtggac atcggctggc gcgatttctt
      661 cgccgatgca cgcttgcagc agatcgttgc aatcgcgctg aagaacaacc gcgacctgcg
      721 cgtgtccatg ctcaacgtgg cagcagcgcg ctcgcagtat cagatcacgc gtgccgagtt
      781 gctgcccacg ctcgacgcag ttgggtcgca gaccaagtcg cgcacgccga gggatctgtc
      841 gttgtttaac cagacgatct cgaaccagta ttcggtcggg gtgaatgcgt cctgggaaat
      901 cgacttcttc gggcggatcc agagcttgaa ggatcaggcg ctcgagcagt atttcgcgtt
      961 ggcggaaaca cgcaaggcgg cggaaatctc gctggtgtcg caagttgccg accagtatct
     1021 gacgatgctc tcggacgacg accagctcac cgtcacgcgc aatacgttga agacggcgga
     1081 cgagtcgtat cggattacga agctgcaatt cgataacggc gtgggcaccg aactcgacgt
     1141 gcgtcagtca gagggcattc agcaacaggc cgccgctaac ctgcagtcgc aattgcgtct
     1201 gcgggcgcag gccgagaatg cgctggtgct gttgatcggc gagccgttgc cggcagattt
     1261 gccgccgggc ttgccgctcg acagccagaa cctgctcacc gatatccccg ctgggctgcc
     1321 ttcggacctg ctgacacggc gtccggatat tgtgtcggcg gagcattcgc tgctggcggc
     1381 gaacgcgaac ataggtgcgg cgcgtgcggc gttcttcccg aagatttcgc tgacgggtag
     1441 cttcgggacg ttggcgcctt cgcttggcac gttgttcaag ccgggttcgg cggcgtggtc
     1501 gttcgcaccg caaatctcga t
//
LOCUS       DATGBK010001173         1675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_292012, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001173 DATGBK010000000
VERSION     DATGBK010001173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292012"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..1010)
                     /locus_tag="VKJ77_16375"
     CDS             complement(90..1010)
                     /locus_tag="VKJ77_16375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46898.1"
                     /translation="MDLTLLRAFVTVAREGNLTRSAVLLHVSQPAVSLQIKNLQETLG
                     VTLFARTSHGLILTRDGETLLPHAERALTAASEVQRVAAALRHEVSGRLTIGTILDPE
                     FLRLGGFLRALVETYPRIETALRHGMSGWVLERIKARDLDVGFYIGDPAIDEPRDPGR
                     FHVVQLKPYLYRVLAPAGWKERVNRLDRSEAGENGWVALARLPWIWTPPESAHNRLLT
                     RIFDAHGVQPVKVAEVDQEPSMLDLVKSGVGLTLVRDSIALAEAHAHALTIVEGVTVP
                     TQLSFIVLAERREEPSIAAALRLIEAQWAT"
     gene            1139..>1675
                     /locus_tag="VKJ77_16380"
     CDS             1139..>1675
                     /locus_tag="VKJ77_16380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HMC46899.1"
                     /translation="MKQDARKLEGEFDYIIVGAGTAGCVLANRLTEDADVSVLLLEAG
                     GRDNYHWIHVPVGYLYCIGNPRTDWLYKTQAEAGLDGRSLSYPRGRVLGGCSSINGMI
                     YMRGQREDYDDWARITGDRDWSWDSVLPVFKRSEDHHSGGNQWHGAGGEWRVEKQRLK
                     WKVLETFAQAAQESGLPAT"
BASE COUNT          340 a          498 c          535 g          302 t
ORIGIN      
        1 agatgcgcga cccctcagac taacaaaatt aaatgaccgg aagattcatc ggcttcccgt
       61 catgacgttc aaaacggccg ttcgggcgac taggtcgccc attgagcttc aatcagacgt
      121 aacgccgccg cgatgctcgg ttcctcgcgg cgctccgcca acacgatgaa cgaaagctgc
      181 gtaggcaccg tgacgccttc cacgatagtc agcgcatgcg cgtgcgcttc ggccaacgcg
      241 atggaatcgc gcacgagggt caggcccacg cccgacttga ccagatcgag cattgacggc
      301 tcctggtcca cttccgcgac tttgaccggc tggaccccgt gtgcgtcgaa gatccgcgtg
      361 agcaagcggt tatgcgccga ttccggcggc gtccagatcc agggcagccg ggcaagcgcc
      421 acccagccat tctccccagc ctccgagcgg tccagccggt tcacgcgctc cttccagccc
      481 gccggcgcca gcacgcgata caaatacggc ttcaattgca cgacatgaaa gcggcctgga
      541 tcgcggggtt catcgattgc cggatcgccg atataaaacc ccacatcgag atcgcgcgcc
      601 ttgatgcgct cgagcaccca gcctgacatg ccatgccgca acgcggtttc aatgcgcgga
      661 tacgtctcta cgagcgcccg caagaagccg cccaggcgca ggaactcggg gtcgaggatc
      721 gtcccgatag tcagccggcc gctgacctcg tggcgaaggg cggcggccac acgctggacc
      781 tcgctcgcgg ccgtcagggc tcgctcggcg tgcggcagga gggtttctcc gtcgcgcgtg
      841 aggatcagtc catgcgatgt tcgcgcaaac aacgtgacgc ccagcgtctc ttgcaggttc
      901 ttgatctgca ggctgacggc gggctgcgac acgtgcaaca acacggccga gcgcgtgaga
      961 ttgccttcgc gggcgacggt gacaaaagcg cggagaagag tcaggtccat ccctgatatt
     1021 agcccagctt ataaagctgt tgaagatatc tgattggatt gctgcactgc gtccgcagta
     1081 gcttgtccat ttacgataga gcgaaagccg cctgaagcgg cttgggcagg agacacagat
     1141 gaaacaggac gcgcgcaagc ttgagggcga atttgactac atcattgtgg gtgcgggaac
     1201 ggcggggtgc gtgcttgcga accggctgac cgaagatgcc gatgtgagcg tgctgctgct
     1261 ggaagccggc ggcagggata actaccactg gattcacgtg ccggtcggat atttgtattg
     1321 cattggcaat cctcgcaccg actggcttta caagacgcag gctgaagccg gactcgacgg
     1381 gcgatcgctt tcgtatccgc gaggccgcgt gctgggcggt tgctcatcga tcaacggcat
     1441 gatctacatg cgcggtcagc gcgaggacta cgacgactgg gcgcgcatta ccggcgatcg
     1501 agactggtcg tgggattcgg tgctgccggt gttcaagcgc agtgaagatc accacagcgg
     1561 tgggaatcaa tggcatggcg ccgggggtga atggcgtgtc gagaaacagc ggctgaagtg
     1621 gaaggtgctg gaaacgttcg cgcaggcggc tcaggagagc ggtcttcctg ctact
//
LOCUS       DATGBK010001174         1872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_337953, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001174 DATGBK010000000
VERSION     DATGBK010001174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337953"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(119..484)
                     /locus_tag="VKJ77_16385"
     CDS             complement(119..484)
                     /locus_tag="VKJ77_16385"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HMC46900.1"
                     /translation="MFTRHQSKDSGTPLGASAFEILLALADGEHHGSSISSEVEQATK
                     GRIRLMPGALYRYLKQMAADGWIADTVKVGDDDARRRYYRLTALGRRVAQAEAERLEE
                     VVRVARLRRLLPALAKVKA"
     gene            936..>1872
                     /locus_tag="VKJ77_16390"
     CDS             936..>1872
                     /locus_tag="VKJ77_16390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005671524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005488 - binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0042918 - alkanesulfonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC46901.1"
                     /translation="MPTISRTQLLAGIGASAALFAAPRIARAAIPSELGIDYAFYNPV
                     SLILKQKGWLEEALSKTKPAAVKVNWVQSLGSNKANEFLAANAIQFGSTAGSAAFLAR
                     ANGRPIRTVFLFSQPEWTALVVGKDSTLKNVADLKGKRVAATRGTDPWFFLLRSLRDV
                     NLTQRDIELVDLQHPDGRTALERGQVDAWAGLDPHMAASQIEAGSRLLYRNVKYNTYG
                     ALNVREDFLAASPEIVAIVLQQYQRAREFAIANPGETSKILADAAKLEVKITDIEIRE
                     RTRYPDPTPGPAYHEALAAVAAIVKDEHLATPGADL"
BASE COUNT          354 a          574 c          546 g          398 t
ORIGIN      
        1 tctgcggcaa cggcggcaac gtgaaatcgg cccgattgta gatcctccgc gatttcctca
       61 cgatattcgc gcgcgtattc cggcgggcaa agccaaagcg cgaagcggat gagtggattc
      121 acgctttcac cttagcgagg gcgggtaaca ggcggcgcag gcgtgcgacg cgcacgactt
      181 cttccaaacg ttcggcttcg gcttgcgcca cgcgccggcc aagtgctgtg aggcgatagt
      241 agcggcggcg cgcgtcgtcg tcgccgactt tgacggtatc ggcgatccag ccgtcggctg
      301 ccatttgctt gaggtaccgg taaagcgcac cgggcatcaa acgaatgcgg cctttcgtcg
      361 cttgctcgac ctcgctgctg atgctcgagc cgtggtgctc cccgtcggca agcgccagca
      421 atatctcgaa tgcgctcgca ccaaggggcg tcccactgtc tttggactga tgacgcgtga
      481 acattcggcc tccgcaatcg tatctcgtat gagatatgtc tgtggtgcgt aaatatatct
      541 cagttgagag ctaatcctgc cgaacgcttc gtgaagcctt ggtaacccca gccgtttgcc
      601 aacaccaaac cggctccggg tccgttgctg tatcataccg tcgttcttgt ccggcccgcc
      661 ccggcgggcg cgcacaatgc cggtatactc gtcgcgatag ccgggagctt aaatcacccg
      721 ctcccggctt ttcgtccttg acgccggtcc cgaaaccgtg ttagagtcgg gacctcgtga
      781 atgtttgtct gatgatgtgc tgctgctgta tgtgctgccc aaccgggtcg gcgtaagcgt
      841 tgcattgagt taacgagcat cctcgttgcc ctttgagacc ttcgccgacg cgaaggtttt
      901 tttattgctt tcctctctca accaggaggc actccatgcc caccatttcc cgtacgcaac
      961 tgctcgccgg catcggcgca tccgccgctc tcttcgccgc cccgcgaatc gcgcgcgctg
     1021 caatcccaag cgagttggga atcgactacg cgttctacaa tccggtcagc ttgatcctca
     1081 agcaaaaggg ctggctcgaa gaggcgcttt ccaaaacgaa gcccgctgct gttaaagtaa
     1141 attgggtgca gtcgctcggc tcgaataagg caaacgaatt tttggccgca aacgcgatcc
     1201 agttcggatc gacggcgggc agcgcggcat tcttagcgcg cgccaatggc cggcccattc
     1261 gcacggtgtt tcttttttct cagccggaat ggacggcgct ggtcgtcggc aaggattcaa
     1321 cgctcaagaa cgtcgccgat ctcaagggca agcgtgttgc ggcaacacgc ggcaccgacc
     1381 cgtggttctt cttgctgcgt tcgctgcgcg atgttaacct gacgcagcgc gatatcgaac
     1441 ttgtggatct gcagcatccc gatgggcgca ccgcgctcga gcgcggacag gtcgatgcgt
     1501 gggcgggact cgatccgcac atggccgcat cgcaaatcga ggctgggtcg cggttgctct
     1561 atcgcaacgt taagtacaac acgtacggcg ccctcaacgt tcgcgaagat ttcctcgcgg
     1621 cttcgcctga gatcgttgca atcgtgctgc agcaatatca acgcgcacgc gagtttgcga
     1681 ttgccaatcc cggcgaaacc tcgaagattc tggccgatgc ggcgaagctc gaagtcaaga
     1741 ttaccgatat cgaaattcgc gagcgcacgc gctatcccga tccaacgccg ggaccggcgt
     1801 atcatgaggc gctcgccgcg gtcgccgcga tcgtgaaaga cgagcatctt gcaacgccgg
     1861 gggcggatct ca
//
LOCUS       DATGBK010001175         1509 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_337974, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001175 DATGBK010000000
VERSION     DATGBK010001175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337974"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..735
                     /locus_tag="VKJ77_16395"
     CDS             <1..735
                     /locus_tag="VKJ77_16395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46902.1"
                     /translation="VGGFLPTYVGIRGTFFVGGAIIAVAALLTIVVVREDFDRTTDVK
                     KRTDAGAVLPPTINRAVIIALLVTAMMVLLANMSIEPIITVYIGQLGVPGDHVARMAG
                     IVMAASAFGSMLTAARFGALADRIGSSKVIIGCLIATSVVMVPQAFVHQWWQLAILRG
                     LMGMTLAGLLPSIAKEIRHAVADHNSGKTLGYLQSAQFSGQVIGPLIGGQIGAHVGLR
                     AVFFVTASLLLVCAGLNRWARTRPVR"
     gene            complement(798..1430)
                     /locus_tag="VKJ77_16400"
     CDS             complement(798..1430)
                     /locus_tag="VKJ77_16400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017878529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HMC46903.1"
                     /translation="MSFHTWFLFATAYLVTTISPGPNVLLVIRNTVRFGGRGTAATIA
                     GNLLAQLVVVLLVALGVGAVLAAMPPLFLAMKVLGAVYLMVLGLKQLRSRKPKAAASA
                     NALPAQSLDRRKIFREALLVSGSNPKTLIFLSAFMPQFIVHDQPLPTQFIAMYLTVAC
                     IVALVHTIYSFGVRRIHSGLGTSRWIEALKRCSGLVFFGLGIKLLTAKRT"
BASE COUNT          307 a          423 c          478 g          301 t
ORIGIN      
        1 gtcggcggtt tcttgccgac gtacgtcggc atccgcggca ccttcttcgt aggcggggcg
       61 atcatcgccg tggctgcgct gctgaccatt gtggtcgtgc gcgaagactt cgatcgcacg
      121 accgacgtga agaagcggac cgacgccggc gcggttttgc ctcccaccat caatcgcgcg
      181 gtgatcatcg cgctgctggt gacggcaatg atggtgttac tcgccaacat gtcgatcgag
      241 ccgatcatca ccgtttatat cgggcaactc ggcgtgccgg gcgatcatgt cgcgcgcatg
      301 gccgggatcg tgatggcggc atcggcattc ggcagcatgt tgaccgccgc gcgtttcggc
      361 gcgcttgctg atcgaatcgg aagctcgaaa gtcatcatcg ggtgtctgat tgcgaccagc
      421 gtggtgatgg tgccgcaggc gttcgttcac caatggtggc agttggccat tcttcgtggc
      481 ttgatgggca tgacgctcgc gggactgctt ccatcgatag ccaaggagat ccggcacgcg
      541 gtcgccgatc acaattcggg caagacgctt gggtatctgc agtcggcgca gttcagcggg
      601 caggtgatag gcccgttgat cggcgggcag atcggtgcgc acgtcggctt gcgcgccgtg
      661 tttttcgtga cggcgtcctt gctgctcgta tgtgccgggt tgaatcgatg ggcgagaacc
      721 aggccggtga ggtgattgcc ctgtggccgc caggcaagct agccgtcgga accgcatttg
      781 atgcccgcac ccgatcgtca agtccgcttc gcggttaaaa gcttgatacc caggccgaag
      841 aagaccaggc cgctgcaccg ctttagggct tcgatccagc ggcttgtgcc aagcccgcta
      901 tgaatcctgc gaaccccgaa cgagtaaatg gtgtgaacca gcgccacgat gcaagccacg
      961 gtgaggtaca tcgcaatgaa ctgcgtcggc agcggctggt catgcacgat aaattgcggc
     1021 atgaaagcag aaagaaaaat caacgtcttg ggattgcttc ccgaaaccaa taacgcttcc
     1081 cgaaaaattt tacgcctgtc gagggactgc gcgggcaggg cgttggcgga tgctgctgcc
     1141 ttgggcttcc ggcttctcaa ttgcttcaga cccaagacca taagataaac cgctcccaag
     1201 accttcatgg cgaggaacaa cggtggcatg gctgcgagga ccgcgcccac ccccaatgcc
     1261 acaagcagca ccacgaccaa ctgggccagc agattccctg cgatggtcgc agccgtgccg
     1321 cggccgccga atcgaacggt attgcgaatg acgagcagga cgttaggtcc gggcgaaata
     1381 gtggtgacca gatacgctgt tgcgaagaga aaccaggtgt gaaaggacat tcgcaggctc
     1441 gctgaaccgt ttctgatggg gacaaccgta gacgaatgat gccatcgatt aattggtggg
     1501 atcaatggg
//
LOCUS       DATGBK010001176         2490 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_13899, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001176 DATGBK010000000
VERSION     DATGBK010001176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2490)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13899"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..552)
                     /locus_tag="VKJ77_16405"
     CDS             complement(109..552)
                     /locus_tag="VKJ77_16405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46904.1"
                     /translation="MSNDSGTAAATRREPMSAEMRDVAMAEVLGDVHLLHKSMKDLVA
                     IVRDSDERISGRIVELRQVAADFANSRDAALAHLATQASETAQRRFTDSMGDMLKQVG
                     GSLVAIERLVQDRLGRRLFDMAAVALMTGGITAAAALFGFWMFGR"
     gene            complement(563..1282)
                     /gene="stbB"
                     /locus_tag="VKJ77_16410"
     CDS             complement(563..1282)
                     /gene="stbB"
                     /locus_tag="VKJ77_16410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012406608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="StbB family protein"
                     /protein_id="HMC46905.1"
                     /translation="MNIAVINFSGNVGKSTIARHLLAPRISDAKVIAIESINADDGAQ
                     ESDEKLRGRQFGELQERLLSGDNLVVDVGASNVEAFVALMSEFDGSHDDFDLFVVPAV
                     RAEKQQRDTISTLVSLSEMGIPAKKIVVVFNQIDRVDGFSKEQFIAIFNFHENTGCFR
                     LHPQAYLHQSDVYKYSIDAGRSISEILADSRDYKQEIARTSSADEKKRLLSLLAFQRL
                     SGRVNTELDDVFEMVVGQYSA"
     gene            complement(1279..1707)
                     /locus_tag="VKJ77_16415"
     CDS             complement(1279..1707)
                     /locus_tag="VKJ77_16415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46906.1"
                     /translation="MNRKRSWTAIKGLPRAAQHAWHRGWLSRSAARTPHWCDVCQLGD
                     AMYQPFVAALQARFAHRAADIEARACVHTGKTLAELDAEAGTDARADTGLRVMGKPVW
                     RYQASGVCVCEAVAGDHIVLIYEPGVLTRRATRKPKEEQS"
     gene            complement(1719..>2490)
                     /locus_tag="VKJ77_16420"
     CDS             complement(1719..>2490)
                     /locus_tag="VKJ77_16420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46907.1"
                     /translation="GARVKTDVPAPTPAASPAATPPVMPIAPAAQAPTASATTEVATP
                     TVAASAPVAKPTPVVASVLVAHGPAPYQNDPENSRSYFVTVKDAAGAEQTSWGIDLER
                     AVGNSGVQIGDPVKLENLGNQPVVVQAPVKDDAGKVIGYEPKETRRNVWSVERDGPAA
                     PVRDVREELEKAIATLPENVRRVVIDRFAETMAAGLKVQDEHVRSESPAEALGRALDA
                     RLAQVTQERVVRETPPAAPSAPAPKRDNPGQGAPALAR"
BASE COUNT          474 a          793 c          706 g          517 t
ORIGIN      
        1 atcgccgctg ggcaggtgct taagctcagg gtccgcgcca agatagccgg tcagaatcac
       61 tttgtttgcc atttcgtact ccgttatttg acttacgtgt tagctcggct agcggccgaa
      121 catccagaaa ccgaaaagcg cggcggccgc tgtgataccg cccgtcatca acgcgaccgc
      181 agccatatcg aatagacgcc ggccaagtcg atcctggaca agccgctcga tcgcaaccag
      241 cgacccaccg acctgtttca acatgtcgcc catcgaatcg gtaaaccgac gctgcgcggt
      301 ctcgcttgcc tgagtagcca gatgcgccaa agcggcatcg cgcgagttgg cgaagtccgc
      361 cgcgacctga cgaagctcga cgattcgccc gctgatacgt tcatcggagt cccgcacaat
      421 cgcgacgagg tccttcatcg acttgtgaag gagatgaacg tcacccagaa cctcagccat
      481 cgccacatcg cgcatttctg cactcattgg ttcacgtcgg gttgccgcag cggtgccaga
      541 gtcattgctc acactgttct ccttaagcac tgtactgacc cactaccatt tcgaacacgt
      601 catcgagttc ggtatttacg cgccctgaaa gacgttggaa cgccagcaaa cttaaaaggc
      661 gcttcttttc atcggccgat gacgtacgtg cgatctcctg cttgtagtcc ctcgaatcag
      721 cgaggatctc gctgatactc cggccggcgt cgatcgaata tttgtagacg tcgctttgat
      781 ggagataggc ttggggatgc aaccgaaagc accctgtgtt ctcatggaaa ttgaagatcg
      841 cgatgaactg ctctttcgag aatccgtcaa cgcgatcgat ctggttgaac acgacaacga
      901 tcttcttcgc cggaatcccc atttcagaca ggctcacgag cgtcgaaatc gtgtcacgct
      961 gctgcttttc cgcacgcacg gccggcacca caaagaggtc gaaatcgtca tgtgaaccgt
     1021 cgaattcgct catcaaggca acgaacgctt caacgttgga cgcgcccaca tcgaccacca
     1081 agttgtcgcc tgacagcaga cgctcttgca gctcgccgaa ctggcggcca cgcagttttt
     1141 catcggactc ttgagcgccg tcgtccgcgt tgatcgattc gatcgcaatt accttcgcat
     1201 cactaatgcg tggtgcgagc aggtgccgtg cgatcgtgct cttacccacg tttccagaga
     1261 aattaataac agcgatattc atgattgttc ttcctttggt ttgcgggtcg cgcgacgcgt
     1321 gagcacgccc ggttcataaa tcaaaacgat gtgatctccc gcgactgctt cacacacgca
     1381 cacgccgctc gcctgatagc gccacacggg cttgcccatc acgcgcaggc cggtgtcggc
     1441 acgcgcgtct gtgccagcct cagcgtcaag ctctgcgagc gtcttaccgg tgtgcacgca
     1501 ggcacgcgcc tcgatatcgg ccgctcgatg cgcaaagcgc gcctgcaggg ccgcgacaaa
     1561 cggctggtac atggcgtcgc ctaactggca gacatcacac cagtgcggcg tgcgcgcggc
     1621 tgagcgcgag agccagccac ggtgccaggc gtgctgagcc gcacgcggca gacccttgat
     1681 cgcagtccat gaacgtttcc gattcatgat ttgccttgtc agcgcgcaag ggcgggcgca
     1741 ccctgccccg ggttgtcgcg cttgggcgca ggtgccgacg gtgcagcggg cggtgtctcg
     1801 cgaacgacgc gttcctgcgt gacttgcgca agacgcgcat cgagcgcccg tcccagtgcc
     1861 tcagcgggtg attcgctgcg cacgtgttcg tcctggacct tcaatcccgc agccatggtt
     1921 tcggcaaacc ggtcgatcac gacgcgccgt acgttttcag gcaacgtggc aatcgctttt
     1981 tcgagctctt cgcgcacgtc cctaacgggt gccgcagggc catcgcgctc gacgctccac
     2041 acattgcggc gcgtttcctt cggctcgtaa ccaatgacct taccggcatc gtccttgaca
     2101 ggcgcttgca ccaccaccgg ctgatttccg aggttttcga gcttcaccgg atccccaatc
     2161 tgcacacccg aattgccgac cgcccgttcg agatcgatgc cccatgaggt ctgctccgca
     2221 ccggccgcgt ccttgacggt gacgaagtac gagcggctgt tttcaggatc gttctggtac
     2281 ggcgccggac cgtgcgccac caggacgctg gcgaccacgg gcgtgggttt cgctacgggc
     2341 gccgacgcgg cgaccgttgg tgtcgcaacc tcagtcgtgg cacttgctgt cggggcctgc
     2401 gcagccggtg cgatcggcat gactggtggc gtggcggcag gacttgcagc cggggttggt
     2461 gccggtacat ctgttttgac acgagcgcca
//
LOCUS       DATGBK010001177         1733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245365, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001177 DATGBK010000000
VERSION     DATGBK010001177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245365"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            43..1557
                     /locus_tag="VKJ77_16425"
     CDS             43..1557
                     /locus_tag="VKJ77_16425"
                     /EC_number="1.2.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006490292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxymuconic semialdehyde dehydrogenase"
                     /protein_id="HMC46908.1"
                     /translation="MSTIVSSPSSEVSPASARPIPPLLPLYIDGEFVATEARFENRSP
                     VTGEVISMVCEAGPAEVERAVAAAKRALQGPWGKTSAEERAVVLNRIAAGIEARFDEF
                     VAAEVADTGRPVKQARTLDIARGVANFRSFADLIKTASSDLFESRAADGADLINYVSR
                     KPLGVIGIISPWNLPLLLLTWKVAPALAMGNCVVVKPSEETPSSATLLAEVMHDAGVP
                     HGVFNLVHGFGPGSAGEALTRQKDVAAITFTGESRTGSTIMKAVADGVKEVSFELGGK
                     NAAVVFADADFDAAVEGVRRSSFTNAGQVCLCSERVYVERPIFERFVAALKQKTEAMR
                     LDFPDAEGVDMGPVISQGHRDKVLSYYRLAVEEGATVVTGGGVPHFGDVRDAGAYVQP
                     TILTGLPDTARCVTEEIFGPVCHIAPFDTEDEVIGRVNDSAYGLAACVWTTNLSRAHR
                     VSRQFHTGLVWVNTWFTRDLRTPFGGAKLSGLGREGGRHSLDFYSEITTICIKL"
     gene            1565..>1733
                     /locus_tag="VKJ77_16430"
     CDS             1565..>1733
                     /locus_tag="VKJ77_16430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006385972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC46909.1"
                     /translation="MTTQTHLLKDRATPRGAYPHLKRAGDFLFVSGTSSRRPDNTIEG
                     AQADAMGTMQLD"
BASE COUNT          318 a          548 c          538 g          329 t
ORIGIN      
        1 cctttctaga ctcattgcat tccgtcacag caggaaccca gcatgagcac gatcgtttcg
       61 tcaccgtcca gcgaagtaag tcccgcttcg gcgcgcccca tcccgcctct tctaccgctt
      121 tacatcgacg gtgaatttgt cgccaccgag gcccgtttcg agaaccgcag ccccgtcacg
      181 ggcgaggtta tttcgatggt ttgcgaggcc ggtcccgctg aggtcgagcg tgccgtcgca
      241 gccgccaaac gcgccttgca aggcccctgg ggcaagacaa gcgcagagga gcgagctgtc
      301 gttctgaatc gaattgccgc cggcattgaa gcgcgtttcg acgagttcgt cgcggccgaa
      361 gttgccgaca ccggccgtcc tgtgaagcag gcaaggacac tcgacatcgc tcgcggtgtc
      421 gccaacttcc gcagctttgc ggatctcatc aagaccgcat cgagcgattt gttcgaaagc
      481 cgcgcggccg acggcgccga ccttatcaac tatgtcagcc gcaagccgct gggtgtgatc
      541 ggcatcattt caccgtggaa cctgcccttg ctgctgctga cgtggaaggt tgcgccagcc
      601 cttgcgatgg gcaattgcgt ggtggtgaaa ccgtcggagg agacgccttc gtcggcgacg
      661 ctgctcgccg aagtcatgca cgatgcaggg gttccgcacg gcgtctttaa tctcgtgcat
      721 ggcttcggcc cggggtccgc aggcgaagcg ctgacgcgcc agaaggacgt ggcggcgatc
      781 acgttcaccg gcgagtcgcg taccggcagc acgatcatga aagcggtggc cgacggcgta
      841 aaggaggtgt cgttcgaact gggcggcaag aacgcagcgg tcgtattcgc cgatgccgac
      901 ttcgacgccg ccgtggaagg cgtgcgccgt tcgagtttca caaatgccgg acaggtctgc
      961 ctatgctccg aacgcgtgta tgtggagcgg ccgattttcg agcggtttgt cgcggcgctc
     1021 aagcagaaga ctgaagccat gcgactggat tttccggatg ccgaaggcgt cgatatgggt
     1081 ccggtcatct cgcagggtca tcgcgacaag gtgctctcgt attaccggct tgcggtggaa
     1141 gaaggcgcga ctgtggtcac gggcggtggc gtgccgcatt tcggcgatgt gcgggacgca
     1201 ggcgcctacg tccagccgac catcctgacc ggtctgcctg acacggcacg ctgcgtgacc
     1261 gaagagatct tcggcccggt ttgccacatt gcgccgtttg ataccgaaga cgaagtcatt
     1321 gggcgcgtca acgacagcgc ctatggcctc gccgcgtgcg tatggacaac gaacctgtct
     1381 cgcgctcacc gtgtatcccg ccagttccac accgggctcg tgtgggtcaa cacgtggttc
     1441 acgcgcgacc tgagaacgcc cttcggcggc gccaagcttt caggcctcgg gcgcgaaggc
     1501 ggccgtcatt cgctcgactt ctactccgag atcacgacca tctgcatcaa gctgtgagcc
     1561 catcatgacg acccagacac acctgctcaa agaccgcgcg acaccacgcg gtgcttatcc
     1621 gcatctcaag cgcgcgggcg atttcctgtt cgtctccggc acgagttcac gccgcccgga
     1681 caacaccatt gaaggtgccc aggccgacgc catgggcacc atgcagctcg aca
//
LOCUS       DATGBK010001178         4719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245369, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001178 DATGBK010000000
VERSION     DATGBK010001178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4719
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245369"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /gene="opgC"
                     /locus_tag="VKJ77_16435"
     CDS             complement(<1..257)
                     /gene="opgC"
                     /locus_tag="VKJ77_16435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OpgC domain-containing protein"
                     /protein_id="HMC46910.1"
                     /translation="MNSPNRRSLEVDFFRGIVLLVIAVDHISGSVLSKFTLHSYAFCD
                     SAEVFVFLGGYASAAAYTTLAANRSHGAARLRFLKRTWEIYR"
     gene            465..644
                     /locus_tag="VKJ77_16440"
     CDS             465..644
                     /locus_tag="VKJ77_16440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46911.1"
                     /translation="MRIHLQSADVVAIIAIALFTALMLAVRFRTTSWRGIVLQALIAN
                     AGAIAAVVAFEVMTT"
     gene            955..2325
                     /locus_tag="VKJ77_16445"
     CDS             955..2325
                     /locus_tag="VKJ77_16445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HMC46912.1"
                     /translation="MIRALRSLPRFTLRRARSLWYRYGIFWVGAIAVGLVAVLYAKLI
                     DWGYNAFRAVQHEHVWLPLILTPAAAALSVWLTRKFFRGSEGSGIPQVIAVLHSPPGL
                     GTRLLSPAILIAKMGISFIAILGGFTIGREGPTVQVGAALMYNLRRLFPRSNARIERQ
                     LVLAGAAAGLSAAFNTPLAGIVFAIEELTRSFEARTSGVLITGIILAGIVALGLNGNY
                     TYFGTIEVSAHFPNLLAVAVVLTAIVTGIAGGGFCWLLLNTSKWIPARLREMHATRPV
                     VFATLCGLIIAVVGLVSGGTTFGSGYAEARGLLEGHEQLSPLYPLLKMVSMIGSYLPG
                     IPGGIFAPSLSIGAGFGNVLHMVFSHMQLSMLIALGMVGYLAAVTQSPIMSFVIVMEM
                     INGHALVISLMATALIASRVSRLFSPPLYEALAERYMTPLPLPVPRASPELPETPVEN
                     EEPVTK"
     gene            complement(2539..2844)
                     /locus_tag="VKJ77_16450"
     CDS             complement(2539..2844)
                     /locus_tag="VKJ77_16450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012366152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YXWGXW repeat-containing protein"
                     /protein_id="HMC46913.1"
                     /translation="MKIRLFIAQAAIVMAGVAAVAGSASAEVIIVAPNAPPPVRIESV
                     PPARVGYVWDNGHWRWEHGQYVWNPGHWQVERVGYHWVPGHWIARGGAWRWMPGHWA"
     gene            complement(3088..3342)
                     /gene="minE"
                     /locus_tag="VKJ77_16455"
     CDS             complement(3088..3342)
                     /gene="minE"
                     /locus_tag="VKJ77_16455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HMC46914.1"
                     /translation="MSILSFLLGEKKKSASVAKERLQLIIAHERAGGHAPADYLPALQ
                     RELVAVISKYVKISSDDIRVSLERQDDLEVLEVKIEIPSV"
     gene            complement(3352..4167)
                     /gene="minD"
                     /locus_tag="VKJ77_16460"
     CDS             complement(3352..4167)
                     /gene="minD"
                     /locus_tag="VKJ77_16460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006025606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HMC46915.1"
                     /translation="MAKIIVVTSGKGGVGKTTTSASFASALALRGHKTAVIDFDVGLR
                     NLDLIMGCERRVVYDLINVIQGEANLNQALIKDKKCENLFILPASQTRDKDALTQDGV
                     EKIINDLIAMDFEYIVCDSPAGIESGALLAMHFADEALIVTNPEVSSVRDSDRILGIL
                     SSKTKRAIEGKEPIKEHLLITRYNPKRVSEGEMLSLTDIQEILRIELIGVIPESEAVL
                     HASNQGLPAVHLDGTDVAEAYKDIVSRFLGEEKSLRFTDYQKPGLLQRIFGNK"
     gene            complement(4265..>4719)
                     /gene="minC"
                     /locus_tag="VKJ77_16465"
     CDS             complement(4265..>4719)
                     /gene="minC"
                     /locus_tag="VKJ77_16465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014722641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004857 - enzyme inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HMC46916.1"
                     /translation="ARDRRGAPKPSVDAGVENTEAAAVIEAAVAQTPAPTAPVPKTTI
                     IDRPLRSGQQVYAKGDLVVLGLVSYGAEVIAEGNIHIYAPLRGRALAGVHGNLDARIF
                     CTCLEPELISIAGIYRTMETPLGPDVLGKSVQIWLDEEKLMIEPLRLT"
BASE COUNT          935 a         1436 c         1313 g         1035 t
ORIGIN      
        1 cgataaatct cccaagtgcg cttcaggaag cggaggcgcg cggcgccgtg actccggttc
       61 gccgccagcg ttgtataagc ggctgccgat gcatatcccc ccaggaacac gaaaacctct
      121 gcggaatcgc agaatgcgta actatgaagt gtaaatttgg ataagacgct tcccgaaata
      181 tgatcgacgg caatcaccag cagcacgatt ccccggaaga aatccacttc gagagaacgg
      241 cgattcgggg aattcataaa tgcagctccg tcgataaggc ttgccctgca cgggaaaacg
      301 ccaattcggg ttagtacgga cagcgcccgg aaaattccca tcagatcatt agataaatgc
      361 aacgctcggg ccatcgccta tttttgtgca acttgcgtac cggctcgtgc tgcctatact
      421 caacaaatat tcaacaacgt ctgaacattc atgaggccag cgtcatgcgc attcatcttc
      481 aaagtgctga tgttgttgca ataatcgcta tcgctctatt caccgcactc atgctggccg
      541 tgcgtttccg cacgacgagc tggcgcggga tcgtgctgca ggcgctgatt gcaaatgccg
      601 gcgcgattgc cgccgtagtc gctttcgaag taatgacaac ctgatcttca gtaagcgctt
      661 cacgccccgt ctaatacagt aatcgataaa actttcaatc tccctgggtt atcgttgaaa
      721 cgtttgcgtg tcattcaaac acctgaataa aacattactt attaattacg ttcttctctc
      781 cactctcgcc accccgacga gagtgttttg gggcgccggc tcataggctt gcgccccgtt
      841 ttcttttcaa agcacgttag aaggtagcaa tcgcagggac caatcggctg gattattgag
      901 acagatcggt ataatcacca ctttgccgac agcctgtcgc atggctcact gcacatgatt
      961 cgcgcgctac gctcgctccc ccgatttaca cttcgacgtg cgcgcagcct ctggtaccgc
     1021 tacggcattt tctgggttgg cgctatcgcg gtcgggttgg tcgcggtgtt gtacgcgaag
     1081 ctcatcgact ggggctataa cgcgtttcgg gccgttcagc acgaacatgt ctggttgccg
     1141 ctgatcctga cgccggcagc ggccgcgcta tccgtctggc tcacgcgaaa gttctttcgc
     1201 ggctcggaag gcagcggcat tccacaggtc atcgccgtgt tgcacagtcc gccgggactg
     1261 ggaacccggc tgctgtcgcc agccatcctg atcgccaaga tggggatctc gtttattgcg
     1321 atcctcggcg gtttcaccat cggccgcgaa ggcccgactg tccaagtcgg tgcagcactg
     1381 atgtacaacc tgcgacgact ttttccccgc tcaaacgccc gcatcgaacg gcaactcgtg
     1441 cttgcgggcg cggcggcagg cttatcggcg gcgttcaaca cgccgcttgc cggcattgtg
     1501 ttcgcgatcg aagaactgac gcgcagcttc gaagcgcgta cgagcggcgt gctgatcacg
     1561 ggcatcatcc tcgcgggtat cgtcgcgctt ggcctgaacg gcaactacac ctatttcggc
     1621 accatcgaag tcagcgcgca tttccccaac ctgctggcgg tcgcagtggt gctcacggcc
     1681 atcgtgactg gcattgcagg cggcggattc tgctggttgc tgctcaatac gtccaaatgg
     1741 attccggcac gtctgcgcga gatgcacgcg acgcgcccgg ttgtgttcgc cacgctgtgc
     1801 gggttgatca tcgccgtggt cgggcttgtg tcaggcggca ctaccttcgg cagcggttac
     1861 gccgaggctc gtggcctgct ggaaggccac gagcagctct cgccgctgta tccgctgctc
     1921 aagatggtct cgatgatcgg ctcgtatctg cccggcattc cgggcggcat tttcgcgccg
     1981 tcgttatcga ttggcgcagg cttcggcaac gtgctccata tggtcttcag tcacatgcag
     2041 ctgtcgatgc tgattgcgct cggcatggtg ggttatctgg cggcggtcac gcagtcgccg
     2101 atcatgtcgt tcgtgatcgt gatggaaatg atcaacggtc atgcgctggt gatttcgctc
     2161 atggcaacgg cgctgattgc gagccgggtg tcgcgcctct tctcgccgcc gctttacgaa
     2221 gcgttggctg agcgctacat gaccccactg cccttgcccg tgccccgggc atcgcccgaa
     2281 ttgcctgaaa cacccgtcga gaacgaagag ccggtcacta aataaagctc gggcaaactc
     2341 aataaacgta gacgcgcggt accggatgat aagcatacgg atgcgccggc acgacaatac
     2401 aaccagccag caaggttgcg aggaagccaa taatcaatag tctggttttc atgtggaact
     2461 cctgaacggg ttcatcggat tcgggcggca tttaaagggc cgcccgtgaa gctagcgacg
     2521 tattgcagct atcaggcctc aggcccagtg tccgggcatc cagcgccatg caccgccacg
     2581 cgcgatccag tgtcccggca cccagtgata ccccacgcgc tcgacttgcc aatgccccgg
     2641 attccacacg tactggccgt gttcccagcg ccagtggccg ttgtcccaca cataacccac
     2701 gcgagccggc ggaacggatt caatgcgcac gggcggcggc gcattcggcg ccacgataat
     2761 cacttcagcc gacgcacttc ccgcgacagc cgcaacgccg gccataacaa tcgccgcctg
     2821 ggcaatgaac aaacgtattt tcatgatcgg cctcttgagt tggtcgcctt gtatcggcga
     2881 tacacactca atgcgcgagg acacggttta gccgacagcg cccgtgtaac ggcgatggct
     2941 aaactgcaac ggaatattga tgtaagtcgc gtatgcgact taaaggtgca ggcgcacttg
     3001 tgaaaaggcc ggaatcaagt gattccggcc tttggatgct gcgcgccaag gaaaaccttc
     3061 aacgctggtt caaaccgtca tccaccttca aaccgatgga atttcgatct tcacttcgag
     3121 tacttcgaga tcgtcctgac gttcgaggct tacccggata tcgtcgcttg aaatcttcac
     3181 gtacttggaa atcacggcaa cgagttctcg ttgcaacgcc ggcagataat cggcgggtgc
     3241 atgtccgccc gctcgctcgt gcgcgatgat caactgcaag cgttccttcg cgaccgaagc
     3301 ggacttcttt ttctcgccca gcaaaaacga aagaatcgac attgcgtccc cttacttgtt
     3361 gccgaagatg cgttgcaaca gacctggctt ctgatagtcg gtgaagcgca gggacttttc
     3421 ttcgccgaga aagcgcgaaa cgatgtcctt gtatgcttca gccacgtcag taccatcgag
     3481 gtgcacggcc ggcagaccct gattggacgc atgcagcacg gcttccgact ctggaatcac
     3541 gccgatcagt tcgatccgca ggatttcctg gatgtcggtc agcgagagca tctcgccttc
     3601 gctcacacgc ttcgggttgt agcgcgtgat cagcagatgt tccttgatcg gctctttgcc
     3661 ttcaatcgcg cgcttcgtct tcgacgagag aatgccgaga atacggtccg agtcacgcac
     3721 ggacgacact tccggattcg tcacgatcaa tgcttcatcg gcgaaatgca tggccagcaa
     3781 cgcgcccgat tcgatccccg ccggcgagtc gcagacgatg tattcgaagt ccatcgcgat
     3841 caggtcgttg atgatcttct ctacgccgtc ttgcgtcagc gcgtctttat cgcgggtctg
     3901 cgaggccggc aggatgaaca ggttctcgca cttcttgtcc ttgatcagcg cctggttgag
     3961 gttcgcttcg ccctggatca cgttgatgag gtcgtacacc acgcggcgtt cgcagcccat
     4021 gatgagatcg agattgcgca ggccgacatc gaagtcgata acagccgttt tgtgcccgcg
     4081 caacgcgagg gccgatgcga agctcgcgct ggtggtcgtc ttgccgacgc cgcccttgcc
     4141 cgaagtcacc acaatgattt ttgccattcc tgtaccttgt gttcgtcaat taaagccgct
     4201 cgcgtcctgt ccgaaaagcg cgccgtcccc atcaggcgcg cctggctgat tcgtctcagg
     4261 cctctcaggt cagccgcagc ggttcgatca tcagtttttc ttcgtcgagc cagatctgca
     4321 ccgacttgcc caggacatca gggccgagcg gtgtttccat cgtcctgtag atgccggcga
     4381 tagagatcag ttccggctcc agacacgtgc agaaaatgcg cgcgtcgagg ttgccgtgca
     4441 cgcccgcgag cgcccggcca cgcaacggcg catagatatg aatgttgcct tccgcgatca
     4501 cttccgcgcc gtagctcacg agccccagca cgacgagatc gcctttcgca taaacctgct
     4561 gccccgaacg caacggccgg tcgatgatgg tcgtcttcgg caccggcgcg gtgggcgcag
     4621 gcgtttgcgc cacggccgct tcgatcaccg cagccgcctc ggtgttctcg acgcccgcgt
     4681 ccaccgacgg cttcggcgca ccgcgccggt cgcgtgctt
//
LOCUS       DATGBK010001179         1784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_13926, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001179 DATGBK010000000
VERSION     DATGBK010001179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13926"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..741
                     /locus_tag="VKJ77_16470"
     CDS             <1..741
                     /locus_tag="VKJ77_16470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017450527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HMC46917.1"
                     /translation="SMGDEDTRTVVDLLVEQVEFCDVIVLNKVDLVGDADRRRLMTIL
                     KGLNPRARIEIAEFGELGLDKVLNTRLFDFDEASKAPGWLRELRGEHTPETEEYGITH
                     FVYRARRPFHPERFWQLITSNWPGVVRSKGFFWLASRPTYVGSWSQAGGVCRHSGMGL
                     WWAAVPKAYWPEDPESLKSIDDDWDPQVGDARQELVLIGIDMDELTLRARLDACLLNN
                     VEMAQGPQAWRQFTDPFPVWDHDAQNVE"
     gene            complement(783..1562)
                     /locus_tag="VKJ77_16475"
     CDS             complement(783..1562)
                     /locus_tag="VKJ77_16475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1223 domain-containing protein"
                     /protein_id="HMC46918.1"
                     /translation="MRASSTLSLAALLVSFSAATASAASANACSASSPEHRAALVELY
                     TSEGCNSCPPADNWLSELDHARKTSTIVPLALHVDYWDSWAWKDRFAQAAFTSRQQQL
                     TYTGGGHVVYTPEIFVGGRELRSWSSDASFESRIQQLNSETPLADIHIDGHPSAPGHV
                     AFDAAFTARKNLPDDAVAYAAVYENQLVSAVKGGENSGVTLHHDRVVRRWIGPVRIVD
                     GRALITGDYASADGHEGVVAFVERGATGEVLQVAELSSCGS"
BASE COUNT          357 a          505 c          580 g          342 t
ORIGIN      
        1 tcgatgggcg acgaagatac gcgtacggtc gtcgacctgc tggtcgagca ggtcgagttc
       61 tgcgatgtga tcgtcctgaa caaggtggac cttgtcggcg acgcggatcg caggcgcctg
      121 atgacaatcc tgaaggggct gaatccccgg gcaaggatcg agatcgcgga gttcggcgag
      181 ctcgggctgg acaaggtgct caatactcgt ctgttcgact tcgatgaagc gtccaaagcg
      241 cccggctggc ttagggagtt gcgtggcgag cacacgcccg agaccgagga atacggcatc
      301 acccatttcg tctatcgcgc gcgccggccg tttcatcccg agcgtttctg gcaactgatc
      361 acgagcaact ggccgggcgt ggtgcgctcc aaaggattct tctggctcgc cagccggccg
      421 acctatgtag ggtcctggtc gcaggcgggc ggcgtatgcc ggcacagtgg gatggggttg
      481 tggtgggcag ccgtaccgaa agcctactgg ccggaagatc ccgaatcgct caaatcgatt
      541 gatgacgact gggatccgca ggtcggagat gcccggcaag agttggtgct gatcggcatt
      601 gatatggacg agttgacctt acgcgcgcgc ctggatgcgt gtctgctcaa caacgtggag
      661 atggcgcagg gtccgcaagc atggcggcaa ttcacggacc cctttcctgt gtgggatcac
      721 gacgctcaga acgtggaata aactggcgcc tgggttgcta ttagcatgaa gtcgttacag
      781 cgttagctgc cgcatgagga cagttcggcc acttgcagca cttcccccgt ggctccgcgc
      841 tcgacgaacg ccaccacgcc ttcgtggcca tcggccgacg cgtagtctcc ggtgattaac
      901 gcgcgtccgt cgactatccg gaccggcccg atccagcgac gcaccacgcg gtcgtgatgc
      961 agcgtgacgc cgctgttttc gccgcctttc accgcactga cgagctggtt ttcatacacg
     1021 gcggcgtacg cgaccgcgtc gtcaggaagg ttcttgcggg cggtgaatgc agcatcgaag
     1081 gcgacatggc cgggcgcgga aggatgaccg tcaatgtgga tatcggcgag tggggtttcg
     1141 ctattcaact gttgaatgcg ggactcgaaa cttgcgtcgc tcgaccagct gcgcaactca
     1201 cggccgccta cgaaaatctc cggcgtgtac accacgtggc cgccacccgt gtaggtcagt
     1261 tgttgctgtc gcgaggtgaa cgcggcttgc gcaaaccgat ccttccacgc ccagctatcc
     1321 cagtagtcca catgcaacgc cagcggtacg atggtgctgg tcttgcgggc atgatcaagc
     1381 tcgctcaacc agttatcggc aggcgggcaa ctgttgcaac cctcgcttgt atagagctcg
     1441 acgagtgcgg cgcgatgctc ggggctcgat gcgctgcatg cgttagcgga ggctgcgctg
     1501 gcagtggcgg cagagaagga cacgagcagc gcggcaaggg acagggtcga tgaagcacgc
     1561 atgacggact ccgaaggtaa aaggagggat gctgttatca ggctggcgaa tgcctgatca
     1621 agaagtcgca tagcctgata gttatttcgg cgatccgtaa aaaccggtta cagctagcgt
     1681 gaaattgccc tagcgcagca tccgcacgct cgtatgaaac gtatatgaca ctgcggcgat
     1741 aagcagttcc gggaataagc caagcgccaa gcgcgccggg ccag
//
LOCUS       DATGBK010001180         1511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_338030, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001180 DATGBK010000000
VERSION     DATGBK010001180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338030"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1244
                     /locus_tag="VKJ77_16480"
     CDS             <1..1244
                     /locus_tag="VKJ77_16480"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HMC46919.1"
                     /translation="VRRWGELMLEHRDALAELLTREQGKPLAEAKGEVAYAASFLEWF
                     AEEAKRSYGDVIPSSKHGSKIIVTREPVGVVAAITPWNFPLAMITRKAGPALAVGCTM
                     VLKPSEETPLSALALAVLAAEAGIPAGVFNVVSGDAVAIGATLTASPVVRKLSFTGST
                     RVGKLLAAQSADTLKKLSLELGGNAPFIVFDDADLDAAVQGAMASKFRNTGQTCVCVN
                     RFFVQAGVYAAFTQRLTEAVRKLRVGDALEQEVDQGPLINEAAFRKVGDHVADALSKG
                     ASALIGGHPHALGGTFFEPTVLVHANRTMLIVQEETFGPVAACFRFETEAEAITLAND
                     TPFGLAAYFYTRDLGRAWRVADALETGMVGINEGIISTEVAPFGGVKQSGLGREGSKY
                     GLDEYMEMKYMMISGLMGIER"
     gene            1373..>1511
                     /locus_tag="VKJ77_16485"
     CDS             1373..>1511
                     /locus_tag="VKJ77_16485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46920.1"
                     /translation="MSSPPYAGATPVRAQAPQTPKPVLLDDIPLNRFHMKIAGLTFGA
                     HF"
BASE COUNT          317 a          427 c          487 g          280 t
ORIGIN      
        1 gggtcaggcg ctggggcgaa ctaatgcttg agcatcgcga tgcgctcgct gaactgctga
       61 cacgtgagca gggcaagccg ctcgcggaag caaaaggcga agtggcctat gccgcaagct
      121 tcctcgaatg gttcgccgaa gaagcgaaac gcagctatgg ggatgtgatc ccgagttcga
      181 agcacggttc gaagatcatc gtgacacgcg agccggtcgg agtagtcgca gccatcacgc
      241 cctggaactt cccgcttgcc atgatcacgc gcaaagccgg ccctgcattg gcggttggtt
      301 gcacgatggt gctgaagccg tccgaggaaa ccccgttgag cgcgttggca ctcgctgtgc
      361 tggccgcaga agcgggcatc ccggcgggcg tgttcaacgt ggtatccgga gatgctgttg
      421 cgattggcgc gacgttgacc gcatcgcccg tggtgcgcaa gttgtcgttc accggatcaa
      481 cgcgcgtggg caagctgctc gccgcgcaat ccgcggacac gttgaagaaa ctctcgctgg
      541 aacttggcgg taacgcgccg ttcattgtgt tcgacgacgc cgatcttgac gctgcggtgc
      601 aaggcgcgat ggcatcgaag tttcgcaaca cgggccagac ctgtgtatgc gtgaatcgat
      661 ttttcgtgca ggcgggcgtg tatgccgcat tcactcaacg cctgaccgag gcagtacgca
      721 aacttcgcgt aggggacgcg ctcgagcagg aagtcgatca ggggccgctc atcaacgagg
      781 ccgcgttcag gaaagttggc gatcacgtcg cggacgcact aagcaagggc gcgtccgcac
      841 taatcggcgg gcatccccat gcgctgggcg ggacgttctt cgaaccgacg gtcctcgttc
      901 acgcgaaccg caccatgttg atcgtgcagg aagaaacgtt cggaccggtg gcggcttgct
      961 tccgcttcga aacagaggcc gaagcgatca cgcttgccaa cgacaccccg ttcggactcg
     1021 ccgcgtattt ctatacgcgt gacctgggcc gcgcgtggcg ggtggccgac gcactcgaga
     1081 cgggcatggt gggtatcaac gaaggaatta tatcgacgga ggtggcgccg tttggcgggg
     1141 tcaagcaatc aggccttggc cgcgagggat cgaagtacgg cctcgatgaa tacatggaaa
     1201 tgaaatacat gatgatcagc ggcctgatgg gcattgagcg ctgaacgccg aaagacgctg
     1261 gcaatgcgca agcagcgctg ccgcccgcgc attgccagcg tcagcgcaat tgaagaacat
     1321 ataggaagga gacgcagtga gtcatcagga cacctcaagt agtgcattcc cgatcagttc
     1381 gccgccttat gcgggtgcaa cgcctgttcg tgcgcaagca ccgcagacgc cgaagccggt
     1441 tttactcgac gacatcccgt taaaccggtt tcacatgaaa attgcgggcc tgacatttgg
     1501 cgcgcacttt a
//
LOCUS       DATGBK010001181         2971 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_60887, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001181 DATGBK010000000
VERSION     DATGBK010001181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60887"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..712
                     /locus_tag="VKJ77_16490"
     CDS             <1..712
                     /locus_tag="VKJ77_16490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC46921.1"
                     /translation="RVDGLIATVADAESNPLLDELDRIGLPYVLAHNDTAYRAAVSVD
                     NRRAARDGVCALLQRGHRRILMLAGSFAESDRARLRYRGYEDAMLDAGLTPHAPLELD
                     FNAEDLPPSLLAHLSDPARRPTALFCSNDRLAMIVMRGLRHAGLSVPHDISVLGFDGI
                     PLGEWLSTALSSVATPNREIGRCAWLHLAKQLGLPGDTTSGPVPFKLPHSVRTGATIA
                     PLIDPAATTASLVSENPA"
     gene            709..1722
                     /locus_tag="VKJ77_16495"
     CDS             709..1722
                     /locus_tag="VKJ77_16495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC46922.1"
                     /translation="MKIRRVLATLLTVTATFCAAGAAYADSTAICYNCPPEWADWASQ
                     IAAIQKQTGIRVPFDNKNSGQAIAQMMAEQKSPIADVVYLGVSSAFQAKDKGLVQPYK
                     PAHWDDIPAGMKDPNGNWFAIHSGTLGFFVNKDALDGKPVPRSWADLLKPEYKGMVGY
                     LDPSSAFVGYAGAVAVNQALGGTLDNFKPGLDWFEKMKANAPIVPKQTAYARVMSGEI
                     PILLDYDFDAYRAKYKDHANVEFVIPKEGTIVVPYVMSLVKGAPHQANGEKVLDFVLS
                     DEGQRLWANAYLRPVRGGALPPDIAAKFLPASEYARAKDVDFAKMAAKQSAFGEEYLR
                     VMH"
     gene            1733..2557
                     /locus_tag="VKJ77_16500"
     CDS             1733..2557
                     /locus_tag="VKJ77_16500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46923.1"
                     /translation="MQDSTFSTRARVFLLAPALAVFCAFWLLPLVALLQASAVPDAFT
                     AYREVLTNARYLHSLLATIALSLAVTAATLVLSTIAGLFLARRELPAKRLLVALLTFP
                     LAFPGVVVGFMVIMLAGRQGLIGAISLRLTGDRWVFAYSLSGLFLGYLYFSIPRVIVT
                     VMAAATKLDASLEEAARSLGASPWRIFIDVVMPALMPALIAAGAVCFATAMGAFGTAF
                     TLATDLDVLPMTIYTEFTLNANLATAAALSIVLGLVTWAVLAVARSLTGATVAATA"
     gene            2566..>2971
                     /locus_tag="VKJ77_16505"
     CDS             2566..>2971
                     /locus_tag="VKJ77_16505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018439006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46924.1"
                     /translation="MPECLKPRRLLVVGQLLLTLALVAFMVVPVVMSVMAGLTVNYFR
                     GVSSGLTLKWLEQVWAMYQGSVWLSIEIALATLAITLAIGVPAAYALARSNTRWARFV
                     EELLVLPIALPGLATALALLSVYGGWSAFRSSM"
BASE COUNT          480 a          867 c          966 g          658 t
ORIGIN      
        1 gcgcgtggac ggtctgatcg cgacagtggc cgacgccgaa tccaacccct tgctcgacga
       61 gcttgatcgc atcggcttgc cttatgtgct ggcgcataac gacacggcgt atcgcgcggc
      121 ggtatcggtg gataaccggc gggcagcgcg tgacggcgtg tgtgcgttgt tgcagcgcgg
      181 gcatcggcgc atcctgatgc tggcgggttc gttcgcggaa tcggaccgcg cgcggttgcg
      241 gtatcgcggc tatgaagacg cgatgctcga cgccggtctc actccgcatg cgccgctcga
      301 actcgatttc aacgcggaag atctgccgcc ttcgctgctc gcccatctct ccgatcccgc
      361 tcgccggccc actgcgcttt tctgcagcaa tgaccgcctg gcgatgatcg tgatgcgcgg
      421 tttgcggcat gcgggcttgt ccgtgccgca cgatatttcg gtgcttggct tcgatggcat
      481 tccgcttggc gaatggttat cgacagcgct gtccagcgtt gccacgccga accgcgagat
      541 tggccggtgc gcatggcttc atctcgccaa gcagcttggt ctgcccggcg atacaaccag
      601 tggccccgtc ccgttcaagt tgcctcatag cgtaagaact ggcgcgacca tcgcgccatt
      661 gatcgatcct gcggccacaa cggcctccct cgtatcggag aatcctgcat gaaaatccgt
      721 cgtgtcctcg ccacgctgct cacagtcact gctaccttct gcgcggccgg cgcggcgtat
      781 gccgacagca ccgcgatttg ctacaactgc ccgccggaat gggcggactg ggcgagccag
      841 attgcggcca tccagaagca gaccggcatc cgcgtgccgt tcgacaacaa gaactccggt
      901 caggccatcg cgcagatgat ggccgagcaa aagagcccga ttgccgacgt ggtgtatctc
      961 ggcgtttcat cggcgttcca ggcgaaagac aagggcctcg tgcagccgta caaacccgcg
     1021 cattgggacg atattcccgc cggcatgaag gatcccaacg gcaactggtt tgcgattcat
     1081 tcgggcacgc tgggcttttt tgtgaacaaa gacgcgctcg atggcaagcc ggtaccgcgc
     1141 tcatgggcgg acttgttgaa gccggaatac aagggcatgg tgggttatct tgatccgtcg
     1201 tcggcgttcg tgggatacgc gggcgcagtg gcggtgaatc aggcgctggg tggcacgctc
     1261 gataacttca aacccggtct cgactggttc gagaagatga aggccaatgc gccgatcgta
     1321 ccgaagcaga ccgcgtatgc acgcgtgatg tcaggcgaga ttccgatcct gctcgactat
     1381 gacttcgacg cgtatcgcgc gaagtacaag gatcacgcga acgtggagtt cgtgattccg
     1441 aaggaaggca cgatcgtcgt gccttacgta atgagcctcg tgaagggcgc accgcatcag
     1501 gcgaacggtg agaaggtgct agatttcgtg ctgtccgatg aaggccagcg cctgtgggcg
     1561 aacgcgtatt tgcggccggt gcgcggcgga gcgttgccgc ctgacatagc tgcgaagttc
     1621 ttgccggcgt cggagtatgc gcgcgccaag gacgtcgact tcgcgaagat ggccgccaag
     1681 cagagcgcgt tcggcgaaga gtatttgcgc gtcatgcact gaccttccaa cgatgcaaga
     1741 ttccaccttc tccacccgcg cgcgggtctt cctgctggca cccgcgcttg ctgtgttctg
     1801 cgcgttctgg ctgctgccgc tggtcgcgtt gctgcaggcc agcgcggtgc cggatgcgtt
     1861 caccgcgtat cgcgaggtcc tgaccaacgc gcgttacctg catagcttgc tcgcgacgat
     1921 tgcgttgtcg ctcgcggtga cggcggcgac gttggtgttg tcgacaatcg cgggtttgtt
     1981 tctcgcgcgc cgcgagttgc cggccaagcg attgctggtg gcactgctga catttcccct
     2041 agcgtttccg ggtgtagtgg tgggattcat ggtgatcatg ctggcggggc gccaggggtt
     2101 gatcggcgct atttccttac gactgacggg cgaccgctgg gtgttcgcgt attcactcag
     2161 cggcttgttc ctgggctatc tgtacttttc gataccgcgt gtgatcgtta ccgtcatggc
     2221 ggctgcaacg aagctggatg cgtcacttga agaggcggcg cgttcgctgg gggcatcgcc
     2281 gtggcgcatc ttcattgatg tcgtcatgcc cgcgttgatg cccgcattga tcgcggcagg
     2341 cgcggtgtgt tttgctaccg cgatgggcgc tttcggcacg gcgttcacgc tcgccactga
     2401 cctcgatgta ttgccgatga ctatctatac cgagttcacg ctgaacgcga atcttgcgac
     2461 ggcagcggcg ttgtcgatcg tgctaggcct cgttacctgg gcagtgctgg cggtggctcg
     2521 cagccttacc ggcgcgactg tcgccgctac cgcgtgagga tgccgatgcc tgagtgcctc
     2581 aagccgcgtc gtctgctcgt tgtggggcaa ttgctgctga cgctcgcgct ggttgcgttc
     2641 atggtcgtgc cggtggtgat gtcggtgatg gctggattga ccgtcaacta ttttcgcggc
     2701 gtgtcgagtg gactgacgct caaatggctc gagcaagtgt gggcgatgta tcagggttcg
     2761 gtctggttat cgatcgagat cgcgctggca acacttgcga tcacgctcgc tattggcgtg
     2821 cccgcagcgt acgcgttggc acgtagcaat acacgctggg cgcgttttgt cgaagaactg
     2881 cttgtcctgc ctatcgcact gccgggactc gccacggcac tggcgttgtt gtccgtgtat
     2941 ggcggctgga gtgcttttcg ctcgagcatg t
//
LOCUS       DATGBK010001182         1762 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_38047, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001182 DATGBK010000000
VERSION     DATGBK010001182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38047"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..604)
                     /locus_tag="VKJ77_16510"
     CDS             complement(<1..604)
                     /locus_tag="VKJ77_16510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013900708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC46925.1"
                     /translation="MDKDLLDGVAMFLTVAEHKNFTTAAARLQVSPTAVSKSIRLLER
                     RHGVSLFQRTTRRVALTEAGESLFARLRPAVEDIGGAFEALNSFRDNASGTLRVTMTR
                     SACTLLIEPMIEQFRLAHPDVHLDLTLDEGTVDLVESGFDAGIRLGEALAKDMVALRL
                     TPDAVWSVVGSPAYFARAGRPRTPQDLMNHEGIQYRFVKSG"
     gene            738..1589
                     /locus_tag="VKJ77_16515"
     CDS             738..1589
                     /locus_tag="VKJ77_16515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006391282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HMC46926.1"
                     /translation="MTLQTSFKRVWMITGASRGMGAEITAAALAQGDAVVATARKSSA
                     VTNALGLQPGLLAVDLDVTSESAAQQAVKLAVEHFGRIDVLVNNAGYGLAGAVEETSA
                     EEVRRIFDTNVMGLLNVTRAVLPHMRSQRSGHVINMSSLGGYRVGAGFGVYGSTKFAV
                     EGLSEALHAELSPLGIHVTVVEPGYFRTDFLDSSSAMEAKNVIADYAETAGKVRVSAS
                     AFNHQQPGDPKRLAQALLTLVSAENPPLRLQLGTDALTRVREKHAFVELELQTWEALS
                     RSTDFAV"
BASE COUNT          342 a          514 c          556 g          350 t
ORIGIN      
        1 cgcccgattt cacgaagcga tactgaatgc cttcgtgatt catcaggtct tgcggtgttc
       61 ggggacgtcc cgcccttgcg aaatacgcgg ggctgccgac aaccgaccag acagcgtccg
      121 gtgtgagccg caaagccacc atgtctttcg cgagcgcttc gcccaggcga atgccggcgt
      181 cgaagccact ttccaccaga tccacggtgc cctcatcgag cgtcaggtcc aggtgcacgt
      241 cgggatgagc caggcgaaac tgttcgatca tcggttcgat cagcagcgtg cacgcagacc
      301 gggtcatcgt gacgcgtagc gtgccggagg cgttgtcgcg aaagctattg agcgcttcaa
      361 acgcaccgcc gatgtcttca acagccggac gcaagcgcgc gaatagcgat tcccctgcct
      421 cggtcaacgc gactctccgg gtggtgcgct gaaacagcga cacgccgtga cgccgctcca
      481 gcagccggat cgatttactg accgccgtgg gcgaaacctg caggcgagcg gccgcggtcg
      541 taaagttctt atgctcggcc accgtcagga acatggccac gccgtccaga agatccttgt
      601 ccatgcaccg ctccattatg aacttcaggt tcatagtgaa tgtacctcga tacgcttttt
      661 caagctgaat cgaatgcgta ggatttgcgt catggcgacc ggattcccgg cggccgaacc
      721 gacaagagag gttcgaaatg accctgcaaa caagcttcaa gcgcgtctgg atgatcactg
      781 gtgcatcgcg cggaatgggc gccgagatca ccgctgccgc gctcgctcaa ggtgacgccg
      841 tggttgccac ggcgcgaaaa tcgagcgccg tcaccaacgc actcggcttg cagcccggcc
      901 tgttggctgt cgacctcgat gtcaccagcg agtcggcggc tcagcaggcc gtcaagctgg
      961 cggtggagca tttcgggcgc atcgacgtgc ttgtcaacaa tgccggttat ggcttggcag
     1021 gcgcggttga agagaccagt gcggaagagg tccgccgtat tttcgacacc aacgtgatgg
     1081 gtttgctcaa cgtcacgcgc gccgtgctgc cgcacatgcg cagccagcgt tcggggcatg
     1141 tgatcaacat gtcgtcgctt ggcggttatc gggttggtgc gggtttcggt gtgtatggtt
     1201 cgaccaagtt tgcagtggaa gggctttcag aagcactcca cgcagaactt tcgccgctcg
     1261 gcattcatgt cacggtcgtc gagccaggtt atttccgaac ggactttctc gattcgtcgt
     1321 cggcgatgga agcgaagaat gtgatcgcgg attacgccga aactgccggc aaggttcgag
     1381 tgtcggcgag cgcattcaac catcaacagc ccggtgatcc caagaggctc gcgcaggcgc
     1441 tgctgacgct ggtgtccgcc gagaatccgc cgctgcggct tcagttgggc acggacgcct
     1501 tgacgcgggt tcgcgagaag catgcgtttg tcgagctgga gcttcagacg tgggaagcgc
     1561 tgtcgcgatc gaccgacttt gcggtctgag gaaggcgtgg tgctgagtgg tcaggcgtag
     1621 tctgccaagt ggcttatcat tgctgaaacc ctctcctgcg cagatgtgca gatggagtgc
     1681 agcctaacgg agcggggccg actgcttgcc tatgcgcgtc tcaccagcgc cggagaggac
     1741 ggaacatgac tgcatcgaac ga
//
LOCUS       DATGBK010001183         1811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_152910, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001183 DATGBK010000000
VERSION     DATGBK010001183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152910"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..749
                     /locus_tag="VKJ77_16520"
     CDS             <1..749
                     /locus_tag="VKJ77_16520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46927.1"
                     /translation="ATIKRGVGNAVVSHYNIEPLFDIYATTQGRDLGAVAAQINTIVH
                     QTAKEVPKGSQVTVRGQVQTMNSAFMGLGLGLIAAIVLIYLLIVVNFHSWSDAFVIVT
                     ALPAALAGIVWMLFITHTPLSVPALTGAILCMGVATANSILVVTFARERLAITGNALV
                     AAMEAGFTRFRPVLMTALAMIIGMLPMALGLGDGGEQNAPLGRAVIGGLMCATIATLL
                     FVPVVFSLVHRNEKAQEDHKLSGSGESHVH"
     gene            739..>1811
                     /locus_tag="VKJ77_16525"
     CDS             739..>1811
                     /locus_tag="VKJ77_16525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006478808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC46928.1"
                     /translation="MSTEIEINPPKRLRHLKLVSVIIALIAAGVVTNGIISRSHAEHE
                     LTTWTDAQAVPTVATVTPQSPAAEQSLELPGQLAAFVNAPIYARVSGYLQTWDADIGT
                     HVKAGQLLGLIDTPDLDQQLQQARADLANTVANENLAATTARRWTQMLKQDSVSQQDA
                     DEKTSDLIAKQATVDASRANVARLEALESFKRITAPFDGIVTARKTDIGALIDAGGGT
                     GPELFAVSDARRLRLYVNVPQSDAAAIKPGLTAKLTVPERPGMAFDAKLVDTDDAITP
                     ASGTLLVQLSVDNASGLLLPGEYTQVHFALPNTGSALLVPASTLIFRTDNMQVAVIDP
                     NNHVHLKDVKIATDLGTHVLIASG"
BASE COUNT          354 a          571 c          556 g          330 t
ORIGIN      
        1 ttgcgacgat caaacgcggc gtgggtaatg cagtggtctc gcactacaac atcgaacccc
       61 tgttcgatat ctatgcgacc acgcaaggcc gggatctcgg cgccgttgcc gcacagatca
      121 acacaatcgt gcaccagacc gcgaaggaag taccgaaggg ctcgcaagtg accgtgcgag
      181 gccaggttca aaccatgaac agcgcgttca tggggctggg cctcggcctg atcgcggcaa
      241 tcgtgctgat ctatttgctg atcgtggtga acttccattc gtggagtgat gcgttcgtga
      301 tcgtgaccgc gttgccggcg gcgctcgcgg gcatcgtgtg gatgctgttc attacgcaca
      361 cgccattgtc ggtcccggcg ctgacgggcg cgatcctctg catgggggtg gccacggcga
      421 actccattct ggtcgtcacc ttcgcccgcg agcggctggc cattaccggc aacgcgctgg
      481 tcgccgcgat ggaagcaggg ttcacgcggt ttcgcccggt gttgatgact gcgctcgcca
      541 tgatcatcgg gatgttgccg atggcgctgg gtctcggtga cggcggcgaa caaaacgccc
      601 cgctcggccg tgcggtgatc ggcggcctga tgtgcgccac catcgccacg ctgctgttcg
      661 tccctgtcgt gttcagcctc gtgcatcgca atgaaaaggc tcaagaggat cacaaacttt
      721 ccggatcagg agaatcgcat gtccactgaa attgaaatca atccccctaa gcgcttgcgt
      781 catctgaagc tggtcagcgt gatcatcgcg ttgattgccg caggcgtggt gaccaacggc
      841 atcatcagcc gctcgcacgc ggagcatgaa ctgacgacct ggaccgacgc gcaagccgtg
      901 ccgaccgtgg ctaccgtcac gccccagtcg cctgcggccg agcagtcgct ggaactgccg
      961 gggcagctcg cggccttcgt caatgcgccc atctatgccc gcgtgtccgg ctacctgcaa
     1021 acgtgggacg ccgacatcgg cacgcacgtg aaggcaggcc agttactcgg cctgatagat
     1081 acacccgatc tcgatcagca actgcaacag gcacgggccg acctcgccaa tacggtggcg
     1141 aacgaaaacc tcgcggcaac caccgcaaga cgctggacac agatgctgaa gcaagactca
     1201 gtctcgcaac aggacgccga tgaaaagacc agcgacctga tcgcgaagca ggccacggtc
     1261 gacgccagcc gtgccaacgt cgcgcgcctt gaagcgcttg aatcgttcaa gcgcatcact
     1321 gcgccgttcg acggtatcgt caccgcgcgc aaaaccgata tcggcgcgtt gatcgatgcg
     1381 ggcgggggca ccggcccgga gttgttcgcc gtctccgacg cgcgccgcct ccggctctat
     1441 gtgaacgtgc cgcaaagcga tgcagcggcg atcaagcctg gactcaccgc caagctgacg
     1501 gtgcctgagc ggccgggcat ggccttcgac gcgaaactcg tcgacacgga cgacgccatc
     1561 acgcctgcgt ccggcacgtt gttagtgcag ttgtcggtgg acaatgcatc gggcttgttg
     1621 ctgccggggg aatacacgca ggttcatttc gcgctgccga acaccggcag cgcgttgctg
     1681 gttccggcga gcacgctgat cttccgtact gacaacatgc aggtcgcggt cattgatccg
     1741 aataaccacg tgcacttgaa agacgtgaag atcgcgaccg acctcggcac ccatgtcctg
     1801 attgcatcgg g
//
LOCUS       DATGBK010001184         1654 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_222825, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001184 DATGBK010000000
VERSION     DATGBK010001184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222825"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1091
                     /locus_tag="VKJ77_16530"
     CDS             <1..1091
                     /locus_tag="VKJ77_16530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC46929.1"
                     /translation="ATALENYVVHMVDTGAIRLISNTSVVAPSRLFAQFPVPAFSATA
                     MPPNPNTARRSDESSNTANISNTSNTSNATFVERLRALPWTWLLAGVAGGLTLAAWLG
                     LFMVRRLSPLGQLSDAVRRHQFIVAYQPIVDLTTRRCIGAEALVRWKHQNRIVRPDHF
                     IPLAEHRGLIQAITDQVFDTVLFELGEFLQRYSELYVSINLSAPDLTSRRFLERLTPA
                     LAAANIAPRQIRIEATERCFLDADAAKEVIQAFRDAGHPVYIDDFGTGYSSLSHLQNF
                     QVDALKIDKSFVDTVDQDAASSSVASHIIDMALTLHVQVVAEGIEREEQACYLRTRGA
                     QFGQGWLFSAPLTAPDFIRYVGRGLVTV"
     gene            1125..1559
                     /locus_tag="VKJ77_16535"
     CDS             1125..1559
                     /locus_tag="VKJ77_16535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46930.1"
                     /translation="MTIIRMTDPVATTFLKDVRHPLLALHRSILDELRTRHEAEFGAV
                     SPGEFLQIVINGSAYKWLGPLSTLIAALDDVLDDADATPDGRIDMAHAVTGMFGAKDR
                     NAAFDAQYLPMLQTSPEIAIANGRVAQQVRAVTPPPAPDTKD"
BASE COUNT          297 a          539 c          501 g          317 t
ORIGIN      
        1 aagccactgc actcgagaat tacgttgtgc acatggttga taccggcgcg atccgactga
       61 tttccaacac gtcggtggtc gcaccttccc ggctgtttgc ccagtttccc gtgcccgcat
      121 tctctgcaac ggcgatgccc ccgaacccta acacggcccg ccgcagtgac gaatcatcaa
      181 acaccgcaaa catatcgaac acatcgaaca catcgaacgc gacgttcgtt gaacgcctgc
      241 gcgcgctgcc ctggacctgg ctgctcgcag gcgtcgcggg cggcctgacg ctcgccgcgt
      301 ggctcggcct cttcatggtg cgccgtctct cgccgctcgg gcagctgagt gacgccgtgc
      361 gccggcatca gttcatcgtg gcgtatcagc cgatcgtcga tctcacgacg cggcgctgta
      421 ttggcgctga agcgctggtg cgctggaagc accagaatcg catcgtgcgc cccgatcact
      481 tcattccgct cgcggaacat cgcggcctga tccaggccat cacggaccag gtattcgata
      541 cagtcctgtt cgaactaggc gagttcctgc agcgctacag cgaactctac gtgtcgatca
      601 acctgagcgc gccggacctg acttcgcggc ggttcctgga gcgcctgacg cccgcgctcg
      661 cggcggcgaa cattgcgccg cggcagatcc ggatcgaggc gaccgagcgc tgttttctcg
      721 acgctgacgc cgccaaggaa gtgatccagg cgttccgcga tgccgggcat ccggtgtata
      781 tcgacgactt cgggacgggt tattcgagcc tctcgcacct gcagaatttt caggtggatg
      841 cgttgaagat cgacaagtcg ttcgtcgata ccgtcgatca ggacgcggcg tccagcagcg
      901 tggcgtcgca cattatcgac atggcgctga ctctgcatgt ccaggtggtc gccgagggga
      961 tcgagcgcga ggagcaggcg tgttacctgc gcacgcgcgg cgctcaattc gggcaaggct
     1021 ggcttttttc cgcgccgctg acggcgccgg attttattcg ctatgtagga cgtggtctgg
     1081 tgacagtgta ggcttggctc attttccact tcggggcaat gaccatgacc atcatcagga
     1141 tgaccgaccc ggtcgcgacc acgtttctca aggacgtgcg ccatccgctg ctggcgctgc
     1201 accgtagcat cctcgacgaa ttacgtaccc gccacgaagc cgaattcggc gcggtgtcgc
     1261 ccggtgagtt cctgcagatc gtgatcaacg gcagcgctta caaatggctg ggcccactct
     1321 caacgctgat tgctgcactt gatgacgtgc tggacgacgc tgacgccacg ccggacggcc
     1381 gtatcgacat ggcgcacgcg gtgacgggca tgttcggcgc gaaggatcgc aacgccgctt
     1441 tcgacgccca atacctgccg atgctgcaaa ccagccccga gatcgcgatc gccaatggcc
     1501 gcgtggcgca gcaagtgcgg gcagtgacgc cgccgcctgc cccggacaca aaggattgac
     1561 ccgcgatcaa tgaccactgg ccgccgggcc agggcgtttg tccctatgcc tgcccgccgg
     1621 cggctttcgg tagaatccgc agccatgatc gaca
//
LOCUS       DATGBK010001185         2231 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_60942, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001185 DATGBK010000000
VERSION     DATGBK010001185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60942"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..582)
                     /locus_tag="VKJ77_16540"
     CDS             complement(<1..582)
                     /locus_tag="VKJ77_16540"
                     /inference="COORDINATES: protein motif:HMM:NF013703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HMC46931.1"
                     /translation="MTTNRHHDSARFVHGSTLRHVVVMAGTGAIGLMAIFAVDLANLF
                     YVSLLGDTSVAAAVGFAGTVNFFHTAISIGMTIGVSATVARLLGAGQRAKARQVASAS
                     LVLMILITLILSAATLLFLDPILNALGAAGETRVLTRSFLLITAPTFVFLAIGMCTAA
                     LMRSVGDAHRAMSVTLTAAVVTAILDPILIFGFH"
     gene            925..1335
                     /locus_tag="VKJ77_16545"
     CDS             925..1335
                     /locus_tag="VKJ77_16545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3597 domain-containing protein"
                     /protein_id="HMC46932.1"
                     /translation="MSIFGTILSKIFPSSHPAITAPAPVADPAAPPAADASAAPDAAA
                     APAAAAEPVDVEAVLTDMQANTSEQLNWRTSIVDLMKLLGLDSSLGARKELAGELHYS
                     GDTDDSASMNIWLHKAVMEQLAANGGKVPDSLKG"
     gene            complement(1498..>2231)
                     /locus_tag="VKJ77_16550"
     CDS             complement(1498..>2231)
                     /locus_tag="VKJ77_16550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carotenoid 1,2-hydratase"
                     /protein_id="HMC46933.1"
                     /translation="TDVKLDAWHLVRAADGHYIVTVNAADFTLNLSLTPTQAPLLQGD
                     NGYSRKGPLATQASYYYSEPQLRVSGKVTRASNASNANGKDGLSAAVSGSAWLDHEWS
                     STVLSSDATGWDWLGANLSDGSALMAFKVRGQKGGTVWSHAALRDANGHVSAFDGDEV
                     DFTPRRTWRSPRTGTYYPVSETVRTGALTWQLDPLMDDQELDSSQSTGAVYWEGAVLV
                     SRDGKTLGHAFLELTGYGKALKLER"
BASE COUNT          449 a          662 c          680 g          440 t
ORIGIN      
        1 atggaaaccg aagatcagga tagggtcaag gatcgcggtc acgacggctg cggtcagcgt
       61 gacgctcatt gcccggtggg catcgccgac agaacgcatc agggcggccg tgcacatgcc
      121 gatagcgagg aacacgaacg tgggcgcggt gatcaacagg aagctgcgcg tcagcacgcg
      181 cgtttcgccg gccgcgccga gcgcgttgag gatcgggtcg aggaagagca gcgtggcggc
      241 gctcaagatg agcgtgatga ggatcatcag cacgagactc gccgatgcta cctgcctcgc
      301 tttggcccgt tggcccgcac caagaagccg cgcaaccgtt gcgctgacgc ctatggtcat
      361 gccgatggaa atggcggtgt ggaagaagtt gacggtcccg gcgaatccga ccgccgcggc
      421 aaccgacgtg tcgccgagca gcgatacgta gaagagattc gccagatcga ccgcgaaaat
      481 ggccatcaat ccaatcgccc cggttcctgc catgaccacg acgtggcgca aggtcgagcc
      541 gtgtacgaag cgagcggagt catggtggcg gtttgttgtc atggtcgaac atgggtagtg
      601 gaaggcggac tggtggacaa atcatcgcat gaatgatctt tgtttccgcg gctgcaagga
      661 tgattgtccg acagtactca tttaggagaa acgaatgcag tgttatacgc gtgttgtggg
      721 aacagtatcc tgcgcgcgtt gcggcttctc catgtcaggg cattttcaag atgatcgatc
      781 gcctacaatg tttctggccg ccgtggccgg actcgcgaca tggcattcaa tgtgccggga
      841 acgtgtcttg cacggcggct ccatgaagca gtgaacgcgc tgcttcacaa cgttgttgac
      901 tacgtcgacc aagggacaaa catcatgagc atttttggca cgatcctgag caagatcttc
      961 ccttcaagcc atcctgctat tacagcgccc gcaccggttg ccgatccggc cgcgcccccc
     1021 gcggcagacg caagcgcagc acccgacgcc gctgcagcgc cggctgcggc cgctgaaccg
     1081 gtggatgtcg aagcggtcct caccgacatg caggctaata cgtcggagca attgaactgg
     1141 aggacatcga tcgtcgatct gatgaaattg ctcggtctcg acagcagcct cggcgctcgc
     1201 aaggaactgg ccggcgagct gcactactcg ggcgacaccg acgattccgc atcgatgaac
     1261 atctggctgc acaaagccgt gatggaacag ctcgcggcca atggcggcaa ggtgccggac
     1321 agcttgaagg gctaagcttc gcgtcgccct tgtggcgacg gctggcacgc gttggcgctt
     1381 gcgcgggtat ggcaagacgg caggcgtgcc agcatgattt cgcaactgtt aaatctgggt
     1441 ggcgtcatgc ccttgtcaca ttgttttgaa tgacactgcg ccatgaaata ggcgtggtta
     1501 tcgctcaagc ttcaacgcct tcccatatcc cgttagttcc agaaaagcgt ggcctagcgt
     1561 tttaccgtca cgactcacca ataccgctcc ctcccaatac actgcaccag tcgactggct
     1621 ggagtcgagc tcctgatcgt ccatcaatgg atcgagctgc cacgtaagcg cgccggtcct
     1681 gaccgtctcc gataccggat aatacgtgcc ggtgcgcggc gagcgccagg tcctgcgcgg
     1741 cgtgaagtcg acctcgtccc catcgaatgc gctcacatgc ccgtttgcat cgcgaagcgc
     1801 tgcgtgtgac cagacggtcc cgcctttttg acctcgcacc ttgaaagcca tcagcgccga
     1861 tccgtccgac aaattggcgc ctagccagtc ccatcccgtt gcatcgctgc taagcaccgt
     1921 gcttgaccat tcgtgatcca gccacgccga gccgctgact gccgcgctca agccgtcctt
     1981 gccgttcgcg ttagaagcgt tggacgcgcg cgtgaccttg ccgctcacac gcagttgcgg
     2041 ttcgctgtag tagtagctcg cttgcgtggc gagcggacct tttctcgagt aaccgttgtc
     2101 gccttgcagc agcggtgcct gagtcggcgt aagcgacagg ttcagcgtga aatccgcggc
     2161 atttactgtg acgatgtaat gaccatcggc ggcacgcacg agatgccagg cgtcgagctt
     2221 gacgtcggtg t
//
LOCUS       DATGBK010001186         1511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176125, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001186 DATGBK010000000
VERSION     DATGBK010001186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176125"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..1237)
                     /locus_tag="VKJ77_16555"
     CDS             complement(65..1237)
                     /locus_tag="VKJ77_16555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014898664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46934.1"
                     /translation="MRPSHSLFVLIGTLLAGAGYGATFFLSMRFRSLGGSDLDTGLAL
                     AEATAGTLLGVPLVGWFAQHIGAARTTALAALCIGLGVTGFALIDHVSPLTVFPGFLV
                     GLGWGAFYLAAPMSLAERTSDANRGFWFMRFGTVQMAGIGGCPALAAFAIRTLHWPLT
                     SVLYLVGGLCAIAALMLEVFGRISPHSPTATVPVRDRWLREFGAIFRTRAVFPIVMIS
                     LCACVFSGLMTFQMALVQGTHAQAGTFFSFYAIAVVMARWLLGRFVIRLHREGITKVL
                     LIFMLLGVVATIAVPYHGFFHPASAVLLGTGYGLVYPTIEAQAVNDSATMHRPAALTW
                     FVVAYFIGTFGFPAVGGWVLVHMGRGMLVALIAACGIAALMLAIARDKRGGVALEA"
BASE COUNT          359 a          474 c          459 g          219 t
ORIGIN      
        1 ggcaggctgt tcagcgcaca ggatggtgtc aacgcgatac ctgtgcagcc atcgggttcc
       61 gcgcctatgc ctcaagtgcg accccacccc gcttgtctcg cgcgatggca agcatgagtg
      121 cggcgatccc gcaagcggca atgagcgcga ccagcatgcc tcgccccatg tggacgagta
      181 cccagccacc taccgccggg aagccgaacg tgccgatgaa gtacgccacg acaaaccagg
      241 tcagcgcggc cgggcgatgc atggttgcgg aatcattgac ggcctgagcc tcgatagtcg
      301 gatagaccag cccgtaaccg gtaccgagca acactgcgct cgccgggtgg aagaacccgt
      361 gatacggcac cgcaatcgtc gccactacgc cgagcagcat gaagatgagc aacactttcg
      421 tgatgccctc gcgatgaagt ctgatcacaa accgccccag caaccagcgc gccatcacga
      481 ctgcgatcgc gtagaagctg aaaaaggtgc cggcttgcgc gtgggtccct tgcaccagag
      541 ccatctggaa ggtcatcaga ccggaaaaaa cgcaggcgca cagcgagatc atgacgattg
      601 ggaaaaccgc gcgtgtccgg aagatggcgc caaattcacg cagccaccga tctcgcaccg
      661 gcacggtcgc cgtcggcgaa tgcggcgaaa tccggccgaa gacttcaagc atcagcgccg
      721 cgattgcgca caggccgcca acgaggtaga gcacgcttgt gagcggccag tgcaacgtgc
      781 gaatggcaaa cgccgccagc gccgggcagc caccgatgcc ggccatctgg accgtgccga
      841 agcgcatgaa ccagaatccg cgatttgcat cgctagttcg ctctgcgagc gacatcggcg
      901 cagcaagata gaacgcgccc caaccgagac ccacgagaaa ccccggaaaa acggttagcg
      961 ggctcacatg gtcgattaac gcaaaccccg tcacacccag cccgatgcac aacgcggcaa
     1021 gcgccgtcgt tcgcgcggcg ccgatgtgct gcgcgaacca gccgacaagc ggcacgccaa
     1081 ggagggtacc ggctgtggct tctgcgagcg ccagccccgt gtcgagatca cttccgccga
     1141 gagagcggaa acgcatcgag agaaaaaacg tcgcaccata ccctgccccg gcgagcaagg
     1201 tgccgatcag cacgaaaaga gagtgggatg ggcgcatggc gtagcctgaa ttgccgacga
     1261 aaatcgtgcg gtcacgcata agcgtgaacc agttcgacgc gacgtgcaac ggttgcggtg
     1321 aggatcatct gatgccggtt gggcgtccgg gttaccagaa tggctcatcg actgacggca
     1381 agtgcgatgt gattaccccc tcgcctataa tgctaaaact gatagtgatt tcacggcggg
     1441 gagccccact ttatgagtca agcacacggg cgatactcgg gatctcgaga caagggccag
     1501 cgtcaatcgc g
//
LOCUS       DATGBK010001187         2004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_269305, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001187 DATGBK010000000
VERSION     DATGBK010001187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269305"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VKJ77_16560"
     CDS             complement(<1..228)
                     /locus_tag="VKJ77_16560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004555384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HMC46935.1"
                     /translation="MVRDSMKTGLKIAVSVLALAGLVATTAARADDEYKGYTLRVKLI
                     GGVQYEALYTRIPLWEKETGAKVEIVSRKSHF"
     gene            complement(298..1362)
                     /gene="ugpC"
                     /locus_tag="VKJ77_16565"
     CDS             complement(298..1362)
                     /gene="ugpC"
                     /locus_tag="VKJ77_16565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HMC46936.1"
                     /translation="MAEVAFKQVQKSFGAVQVLKQIDLTVADGEFLVLVGPSGCGKST
                     LLRALAGLEGVTHGRILIDGRMVNDLPPKDRDIAMVFQNYALYPHMSVLENLTFALKL
                     RDMKPDEIAARANQAATILGLQDLLGRYPRHLSGGQRQRVAMGRAIVRDPKVFLFDEP
                     LSNLDAKLRVQMRAEIKALHQRLRATTVYVTHDQIEAMTMADRIVVLNGGAIEQIGAP
                     LELYDDPDNLFVASFIGSPSMNLFAGRYELQNDGARVRIGDFSIQVSVVNARDGQEVT
                     VGVRPEHLVVTETGGIPFNVDVVEPTGASTELFGTVAGQRCCVIVNGRLLLRPEQGIR
                     LDAELENTLVFDASTSRRLR"
     gene            1645..>2004
                     /locus_tag="VKJ77_16570"
     CDS             1645..>2004
                     /locus_tag="VKJ77_16570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004523847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46937.1"
                     /translation="MDNTRYSAPALEKGLDIIELLASHPEGLSLADLGKTLGRTTAEI
                     FRMVVTLETRGYLLAIGDRYVLSLLLFQLAHRHQPVRSLVTTALPLMTQLANDVKQSF
                     HLCVYQDGRVLIVAGVES"
BASE COUNT          393 a          605 c          565 g          441 t
ORIGIN      
        1 gaagtgactc ttgcgcgaga caatctcaac cttcgcgccg gtctcctttt cccacagcgg
       61 aatgcgcgtg tacagcgctt catattgcac gccgccgatc agcttgacgc gcagcgtata
      121 acctttgtat tcgtcgtcgg cacgtgccgc ggtcgtagcg accagacccg ctaaagccag
      181 taccgacacc gcgatcttga ggccggtttt catcgaatcc ctaaccatga ttcatctcct
      241 ttgttatgcg ccgtgacgtc gggcgaaacg gcttgcgtgt ggttgtttct tagctttcta
      301 gcgcagccgg cggctggtgc tggcatcgaa gacaagcgtg ttctcaagct cggcgtcaag
      361 gcggatgccc tgctccgggc gcagcaacaa acggccgttc acaatgacgc aacagcgctg
      421 gcccgcgacc gtgccgaata actcggtcga cgcgcccgtt ggttcaacta catcaacgtt
      481 gaatggaatg ccgcccgtct ccgtcaccac aagatgctcg ggccgcacgc cgaccgttac
      541 ctcttgccca tcgcgagcgt tgaccacgga cacttgtatc gagaaatcgc caatgcgcac
      601 ccgcgcgcca tcgttttgca actcgtagcg gccggcaaag aggttcatgg aaggcgagcc
      661 gataaaactc gcgacaaaca ggttgtcggg gtcatcgtag agttccagcg gcgcaccaat
      721 ctgctcgatc gcgccaccgt ttaacacgac gatgcggtcc gccatcgtca tggcttcaat
      781 ctgatcgtgc gtcacgtaga ccgtggttgc acgcaagcgc tgatgcagcg ccttgatttc
      841 cgcgcgcatt tgaacgcgta gcttcgcgtc gaggttcgac aatggttcgt cgaagaggaa
      901 caccttcggg tcacgcacga tcgcgcgccc cattgccacg cgttgacgct ggccgccgga
      961 caagtggcgc ggatatcggc cgagcaagtc ctgaagccca agaatggtcg ccgcctgatt
     1021 tgcgcgagcc gcgatttcgt cgggcttcat gtcgcgcagc ttcagcgcga acgtgaggtt
     1081 ctcgagcacg ctcatatgcg gatacagcgc gtagttctgg aacaccatgg cgatgtcccg
     1141 gtccttcggc ggcaggtcgt tgaccatgcg gccgtcgatc agaatccgtc catgcgtcac
     1201 gccttcgagt cccgccagcg ctcgcagcaa tgtcgactta ccgcacccgc tcggccccac
     1261 gagcacgagg aactcgccat ccgccacagt caggtcgatc tgcttcaaca cctgtacggc
     1321 gccgaacgac ttctgcacct gtttgaatgc cacttcagcc atcagccttg ctcctcatgc
     1381 gaattattcc gcgttgcgga tctcgcgtct cgcacgtctt gcggaccact tttccatcga
     1441 tgcaagtcat tttaaatata aaacgctatt tcatacatga atttttattg gtgttttccc
     1501 gatgcccatt tgagttcgtt ttccttcagc aatgacgaca aacgcaacgg tttggcgatc
     1561 tacaatcacg ccatgcgatt gccggatctc attgcttcga gaccggttga agacggacat
     1621 ctggcttgag agcagggaga gattttggac aacacgcgat actcagcgcc ggcgctcgaa
     1681 aaggggctgg acatcatcga actgctggcg agtcatccgg agggcttgtc actggctgac
     1741 ttggggaaga cgctcgggcg cacgaccgcg gagatttttc gcatggtcgt cacgctggag
     1801 acgcgcggat atctgctggc gataggtgac cggtacgtgt tgtcgttgtt gctgttccag
     1861 cttgcccatc ggcatcagcc ggtgcgctcg ctagtgacca ccgcactgcc gttgatgacg
     1921 caactggcca acgacgtcaa gcagtcgttc cacctgtgcg tgtatcagga cgggcgcgtg
     1981 ttgattgtcg cgggggtgga aagt
//
LOCUS       DATGBK010001188         4771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_152977, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001188 DATGBK010000000
VERSION     DATGBK010001188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4771
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152977"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..137
                     /locus_tag="VKJ77_16575"
     CDS             <1..137
                     /locus_tag="VKJ77_16575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HMC46938.1"
                     /translation="IAFARVPASVKAGDKVHVVIRDKQLPASVVKLPFVRNGKVLAAL
                     "
     gene            205..585
                     /gene="gcvH"
                     /locus_tag="VKJ77_16580"
     CDS             205..585
                     /gene="gcvH"
                     /locus_tag="VKJ77_16580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HMC46939.1"
                     /translation="MSIPADLKYTESHEWVRTESDGTLTIGITDHAQEALGDVVFIEL
                     PPVGKTVAAGDAIAVIESVKAASDIYAPVSGEIVGANDALTGTPDQINGTPYESWLFK
                     IKPAADAKTDRLIDAAAYGTSIGE"
     gene            659..3586
                     /gene="gcvP"
                     /locus_tag="VKJ77_16585"
     CDS             659..3586
                     /gene="gcvP"
                     /locus_tag="VKJ77_16585"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HMC46940.1"
                     /translation="MKLEHPDRLMNRSSLSLAALECHDAFAQRHIGPDAADQHAMLEA
                     LGFASRAAFIDAVIPEAIRRKETLPLGAFTQPKSEAEALASLRKLADQNLVFRNYIGQ
                     GYYGTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMIIDLTGLAISNA
                     SLLDEATAAAEAMTLLQRAGKPKSNLFYVADDVLPQTIEVVRTRAKPAGIEVKVGPAA
                     DAATANAFGVLLQYPGANGAVHDYRALTEAVHAAGGFVIAAADLLALTLLTPPGEWGA
                     DVAIGNTQRFGVPVGFGGPHAAYMAVRDDFKRQMPGRLVGVTVDAQGKHALRLALQTR
                     EQHIRREKATSNVCTAQALLAIMASMYAVYHGPQGLKTIALRVNRVASIFAAGVQKLG
                     YTLANETFFDTVTIVSGTNTTALHQAASAVHVNLRHIDATHVGVSVDETTTRDDLLKL
                     FALFAEVVGKTETFDIDALDADAKVSLPKALERTSAYLTHPVFNRHHSEHEMLRYLRS
                     LADKDLALDRTMIPLGSCTMKLNATSEMLPVTWPEFAQIHPFAPAEQTVGYRTMIDQL
                     EQMLVACTGYAAVSLQPNAGSQGEYAGLLIIHAYHESRGEGHRNICLIPSSAHGTNPA
                     SAQMAGMQVVVVACDEQGNVDIADLKAKAEKHADKLAAIMITYPSTHGVFEANVREIC
                     EIVHAHGGQVYVDGANMNAMVGLTAPGQFGGDVSHLNLHKTFCIPHGGGGPGVGPVAV
                     GAHLAKFLPNQHSTGYQRDAAGIGAVSSAPYGSAAILPISWMYIAMMGAQGLTNATES
                     AILAANYVAKRLAPHYPVLYSGAGGLVAHECILDLRPLKETSGISVDDVAKRLIDYGF
                     HAPTMSFPVPGTLMVEPTESESKEELDRFIDAMTAIRDEIRAVEEGKSDREDNPLKNA
                     PHTAAVVVTDGWSHAYSREMAAYPLTSLIARKYWPPVGRADNAYGDRNLFCSCIPLSE
                     YGE"
     gene            3705..>4771
                     /locus_tag="VKJ77_16590"
     CDS             3705..>4771
                     /locus_tag="VKJ77_16590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HMC46941.1"
                     /translation="MARQVRVVSKTWRIPAMIAALAATALTTQSAFAAMNFCAAPAMQ
                     NSERTNADPGVKALVKMVQSRLNDQPKARATLHTEGTLPHQGIRDESEEAEKDLGLMR
                     DAALAWRATGNEAYLRLVDRFLFAWVTTYQPSFNPIDETNFESLILAYDLTASALPVK
                     TRNASSVFISKMVTGYIADIDKQKRPLTGTYRNNWQSHRIKLISMGAFTTDDRKLINA
                     AQRLYVEHIGDNIAPDGSTVDFGERDALHYVTYDLQPLVTAALAARRHNRNWLGERAP
                     SGATLAAALNWLTPYALGTRTHEEFVHSSVPFDATRREAGLPGYSGTWDPKHAAELFH
                     LSARLDGRYTPIALRLAPTPPA"
BASE COUNT          994 a         1460 c         1455 g          862 t
ORIGIN      
        1 ccatcgcgtt cgcccgggtg ccggcgagcg tgaaagcggg cgataaagtg cacgtcgtaa
       61 tccgcgacaa acaactgccg gcaagcgtgg taaaactgcc tttcgtgcgc aacggcaagg
      121 tgttggcggc gctttgaaac gccttcaatt gcctgctgaa ataaccgcgc acgtcccacc
      181 ctcaaagaca actggagcat ccgcatgagc atcccggccg acctcaaata caccgaatcg
      241 cacgaatggg tgcgcaccga atccgacggc accctgacca tcggtattac ggatcacgcg
      301 caggaagcac tgggcgatgt cgtgttcatc gaactgcctc ctgtgggtaa gacggttgcc
      361 gccggcgacg ccatcgcggt gatcgaatcg gtgaaagcag catccgatat ctacgcgccc
      421 gtgtccggcg aaatcgtcgg cgcgaacgat gcgttgacgg gcacgccaga ccagatcaac
      481 ggcacgccat atgaaagctg gctcttcaag atcaagcccg ctgccgacgc caagacggat
      541 cggttgatcg acgccgctgc atacggcacc tcgatcggcg agtaagtagg cgagtaaatc
      601 tatcaacgac cgtgcggcgc gctttccata aaaagccgcc gcaccagcag gaattctcat
      661 gaagctcgaa cacccggacc gtctgatgaa ccgctcatcc ttgtccctcg ccgcgctcga
      721 atgccacgat gcgttcgccc agcggcacat tggcccggat gcggccgacc agcacgccat
      781 gctcgaagcg ctcggtttcg cgtcgcgcgc ggcgttcatc gacgcggtga ttcccgaagc
      841 tatccgacgt aaggaaacgc tgccgctcgg cgcgttcacg cagccaaaaa gcgaagcgga
      901 agcgctggcg tcgctgcgga agctggcgga tcagaacctg gtgttcagaa actatattgg
      961 gcagggttat tacggcacgc acacgccggc cgtgatcctg cgcaacgtgc ttgaaaaccc
     1021 ggcctggtac acggcttaca cgccgtacca gccggagatt tcgcaaggcc gcctggaagc
     1081 gctgctcaac ttccagcaga tgatcatcga cctgacgggt ctcgcgattt cgaacgcatc
     1141 attgctcgat gaagccaccg ccgccgccga agccatgacg ctgcttcaac gcgcgggcaa
     1201 gccgaaatcg aacctgtttt atgtcgccga cgacgtgctg ccgcagacca tcgaagtcgt
     1261 gcgcacgcgt gcaaaaccgg cgggtattga agtgaaagtc ggtcctgccg ccgacgccgc
     1321 cacggccaac gcattcggcg tgctgctgca atacccaggc gcgaatggcg ctgtgcatga
     1381 ctatcgcgcg ctgactgaag cagtgcatgc cgccggtggt tttgtgatcg ccgcagccga
     1441 tctgctcgcg ctcacgctgc tgaccccgcc gggcgaatgg ggcgcggacg tggctatcgg
     1501 taatacgcag cgctttgggg tgccggttgg tttcggcggt ccgcacgcgg cgtacatggc
     1561 cgtgcgcgat gacttcaagc ggcaaatgcc aggccgcctg gtcggcgtga ccgtcgatgc
     1621 ccaaggcaag cacgcgctgc gtctcgcgct gcaaacgcgt gaacaacata tccgccgcga
     1681 aaaggcgaca tcgaatgtat gtacggcgca ggcgttgctc gcgatcatgg ccagcatgta
     1741 tgccgtgtat cacgggccgc agggcctgaa gaccatcgcg ttgcgcgtga atcgcgtggc
     1801 gtcgatcttc gccgccggtg tgcaaaagct cggctacacg ctcgcgaacg aaactttctt
     1861 cgataccgtc accatcgtta gcggcacgaa taccacggcg ctgcatcagg cggcgtccgc
     1921 ggtgcacgta aacctgcgcc acatcgatgc aacgcacgta ggcgtttccg tcgatgaaac
     1981 caccacgcgc gacgacttgc tcaagctctt cgcgttattc gcggaagtgg taggcaagac
     2041 ggaaacgttc gatatcgacg cactcgatgc cgacgcaaaa gtctccctgc cgaaagcact
     2101 ggaacgcacg agcgcatacc tcacgcatcc ggtgttcaac cgtcaccact ccgagcatga
     2161 aatgctgcgc tacctgcgca gtctggcgga taaggatctc gcgctcgacc gcacgatgat
     2221 cccgctcggt tcatgcacga tgaagctgaa cgcaacgtcc gaaatgctgc ccgtgacgtg
     2281 gcccgaattc gcgcagatcc atccgttcgc gccggctgag caaacggtgg gttatcgcac
     2341 gatgattgac cagctcgagc aaatgctggt tgcgtgtacc ggttacgcgg ctgtttcgct
     2401 gcaaccgaat gccggctcgc agggcgagta cgccggcttg ctgatcatcc acgcgtatca
     2461 cgagtcgcgt ggcgaagggc atcggaacat ctgcctgatt ccatcgtccg cgcacggtac
     2521 gaacccggca tcggcgcaaa tggccggcat gcaggtggtg gtcgttgcgt gcgatgaaca
     2581 aggcaacgtc gatatcgccg acttgaaagc gaaggccgaa aagcacgccg acaaactcgc
     2641 cgcgatcatg atcacgtatc cgtccacgca cggcgtgttc gaagcgaacg tgcgcgaaat
     2701 ctgcgagatc gtgcacgcgc atggcggtca ggtttatgtc gatggcgcga acatgaacgc
     2761 gatggtcggc ctcaccgcgc cgggccagtt cggcggcgat gtctcgcacc tgaatctcca
     2821 caagaccttc tgtattccgc acggcggcgg cggaccgggc gtgggtccgg tcgcggttgg
     2881 cgcgcatctc gccaagttcc tgccgaacca gcattcaact ggctaccagc gcgatgcggc
     2941 cgggattggc gcggtatcgt cagcgcctta tggctcggca gccatcctgc cgatttcgtg
     3001 gatgtatatc gcgatgatgg gcgcgcaagg tctcacgaac gcgaccgaaa gcgcgatcct
     3061 cgcggcgaac tatgtggcga agcgactcgc gccgcattac cccgtgctgt acagcggcgc
     3121 gggcggtctg gtcgcacacg aatgcattct cgatctgcgg ccgttgaaag agaccagcgg
     3181 catttcggtc gatgacgtgg cgaaacgcct gatcgattac ggttttcatg cgccgaccat
     3241 gagcttcccg gtgccaggca cgctgatggt cgagccgacg gaatcggaat cgaaagagga
     3301 actggatcgg tttatcgatg caatgaccgc cattcgcgac gaaattcgcg cggtggaaga
     3361 aggcaaatcg gatcgcgaag acaacccgct gaagaacgcg ccgcatacgg cagcggttgt
     3421 tgtcaccgat ggctggagcc acgcctactc gcgtgaaatg gcggcgtatc cgctgacttc
     3481 gctgatcgcg cgcaagtact ggccgccggt cggccgcgcc gacaacgcct acggcgaccg
     3541 caatctgttc tgctcgtgca ttccgttgtc ggaatacggc gaataaaggc caaattagcg
     3601 tcgcgtttca actgtccggc tttcaggagg gccggacagt tttgccggag tcacgcaaca
     3661 ccagatacca tctcacccga accaagccaa tcagggagtt ttgcatggcg cgacaggtgc
     3721 gagtggtgag taaaacgtgg cgtattccgg cgatgatcgc ggcccttgca gcaacggcat
     3781 tgaccacaca gagcgcgttc gccgcaatga atttttgcgc cgcgcccgcg atgcagaaca
     3841 gtgagcgcac gaacgccgat ccgggcgtga aagcgctggt aaaaatggtg cagtcgcggc
     3901 tgaacgacca gccaaaagcg cgggcgacgc ttcatacaga aggcacattg ccacatcagg
     3961 gcattcgcga cgaaagcgaa gaagcggaga aggatctcgg attgatgcgc gatgccgcgc
     4021 ttgcatggcg cgcgaccggc aacgaggcgt atttgcgtct cgtcgaccgg tttttattcg
     4081 cgtgggtcac gacgtaccag ccgagtttca atcctatcga tgaaacgaat ttcgaatcgc
     4141 taattctcgc ctacgacctg accgcgagcg cattgccggt aaaaacgcgc aatgcgtcga
     4201 gcgtgttcat ctcaaagatg gtgacggggt atatcgcgga tatcgataag cagaaacggc
     4261 cgctgaccgg tacgtatcga aacaactggc agagtcaccg gatcaagttg atttcgatgg
     4321 gcgcgttcac tactgatgac cgcaaactga ttaacgcggc gcagcgtctg tatgtggagc
     4381 atattggaga caacattgcg ccggacggct cgacggttga tttcggcgag cgtgacgcgc
     4441 tgcattacgt cacttacgac ctgcagccgc tggtcacggc cgcgctggct gcgcgccgtc
     4501 ataaccgcaa ttggttgggc gaacgcgcgc cgtcgggcgc gacgctcgcc gcggcgctga
     4561 actggctcac gccgtacgcg ctcggcacgc gcacgcacga ggaatttgtt cattcgagcg
     4621 tgcccttcga cgccacccgc cgcgaggctg gcctgcccgg ttattcgggc acgtgggatc
     4681 cgaaacacgc ggccgagttg ttccatctat cggcccggct cgatgggcgt tacacgccca
     4741 ttgcgctgcg cctggcgccc acgccgccgg c
//
LOCUS       DATGBK010001189         1614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_38161, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001189 DATGBK010000000
VERSION     DATGBK010001189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38161"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1477
                     /locus_tag="VKJ77_16595"
     CDS             <1..1477
                     /locus_tag="VKJ77_16595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HMC46942.1"
                     /translation="LAHTIVTEGLVKEDFVAERCEPRAFQQWRDFVTLEENSPEAMEA
                     VTGVPAQSVREAARIYANAGNGAIYYGLGVTEHAHGSTTVMGIANLAMATGNVGREGV
                     GVNPLRGQNNVQGSCDMGSFPHELPGYRHISDAAVRSLFEEAWNVKLQSEPGLRIPNM
                     FDAAVHGSFLGLYCQGEDIVQSDPNTQHVSKALSSMECIVVQDIFLNETAKYAHVFLP
                     GSSFLEKDGTFTNAERRISRVRKVMPPLPGLADWEVTIKLARALGYEMNYTHPSQIMD
                     EIASLTPTFTGVSYKRLDELGSIQWPCNAQAPDGTPTMHIDEFVRGKGRFVITKFIAT
                     PEKVTRKFPLLLTTGRILSQYNVGAQTRRTENSRWHDEDRLEIHPYDAEDRGIKADDW
                     VGIESRAGQTVLRAKITERMQPGVVYTTFHFPESGANVITTDSSDWATNCPEYKVTAV
                     QVMPVEQPSQWQKDYSRFNTQQLEFLELRDSTVAAVTSSGK"
     gene            1480..>1614
                     /locus_tag="VKJ77_16600"
     CDS             1480..>1614
                     /locus_tag="VKJ77_16600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit delta"
                     /protein_id="HMC46943.1"
                     /translation="MDVNSLVEMANQIGEFFDSMPDRAEAVDGVADHIHRFWAPRMRI
                     A"
BASE COUNT          330 a          464 c          522 g          298 t
ORIGIN      
        1 gctcgcgcat acgatcgtga ccgaaggcct ggtgaaggaa gatttcgtgg ccgagcgttg
       61 cgaaccgcgt gcgttccagc aatggcgcga cttcgtcacg ctcgaagaaa actcgccgga
      121 agccatggaa gccgtcaccg gggtgccggc gcagtcggta cgcgaagccg cgcgcatcta
      181 tgcgaatgcc ggcaacggtg cgatctacta cggcctgggc gtgacggaac acgcgcatgg
      241 ctcgacgacg gtcatgggta tcgcgaacct cgcgatggcc accggcaacg tcggccgtga
      301 aggcgtgggt gtgaatccgc tgcgtggtca gaacaacgtg cagggttcct gcgacatggg
      361 ttcgttcccg catgaattgc cgggttatcg gcatatcagc gatgcggcag tgcgttcgct
      421 gttcgaagaa gcatggaacg tgaagctgca atcggagccg ggcctgcgga ttccgaacat
      481 gttcgatgcc gccgttcatg gcagcttcct tggcctgtac tgccagggcg aggacatcgt
      541 tcaatccgat ccgaatacgc agcatgtatc gaaggcgttg tcgtcgatgg aatgcatcgt
      601 cgtgcaggac atcttcctga acgagacggc caagtacgcg cacgtgttcc tgccgggttc
      661 atcgttcctc gagaaagacg gcacgttcac caacgccgaa cgccgcattt ctcgcgtgcg
      721 caaggtcatg ccgccgctgc cgggtctggc cgactgggaa gtgacgatca agctcgcccg
      781 ggcactcggt tatgaaatga actacacgca tccgtcacaa atcatggacg agatcgcgag
      841 cctcacaccc acgttcaccg gcgtgtcgta caagcgtctc gacgaactcg gcagcatcca
      901 gtggccgtgc aacgcgcaag cgccggacgg cacgccgacc atgcacatcg acgaattcgt
      961 gcgcggcaag ggccgcttcg ttatcacgaa gttcatcgcg acgccggaga aggtcacgcg
     1021 caagttcccg ttgctgctca ccacgggccg catcctgtcg cagtacaacg tgggcgcgca
     1081 gacgcggcgc acggagaact cgcgctggca tgacgaggat cgcctggaga ttcatccgta
     1141 cgacgccgag gaccgcggta tcaaggcgga cgattgggtc gggattgaat cgcgtgccgg
     1201 gcagaccgtg ctgcgcgcga aaatcaccga gcggatgcag ccgggcgtgg tgtacacgac
     1261 gttccacttt ccggagtccg gcgcaaacgt gatcacgacc gactcctccg attgggccac
     1321 gaattgtcct gagtacaagg tgacggcagt gcaggtcatg ccggtggaac agccgtcgca
     1381 atggcagaag gattattcgc gcttcaatac gcagcagttg gagtttcttg agttgcgtga
     1441 ttcaacggtg gcggcggtga cgtcgtcggg gaaataatca tggatgtgaa cagcctggtc
     1501 gagatggcga accagatcgg tgaattcttc gattcgatgc cggatcgtgc ggaagccgtg
     1561 gatggcgtag ccgatcacat tcaccggttc tgggcgcccc gcatgcggat tgcg
//
LOCUS       DATGBK010001190         2250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_60986, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001190 DATGBK010000000
VERSION     DATGBK010001190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60986"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..945)
                     /gene="epsC"
                     /locus_tag="VKJ77_16605"
     CDS             complement(16..945)
                     /gene="epsC"
                     /locus_tag="VKJ77_16605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011694557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase EpsC"
                     /protein_id="HMC46944.1"
                     /translation="MAAFDIDDIVQSLQTVRQQWREVQKRSLEPGGRELPAREALANI
                     VETLKGVLFPMRLGPHDLRQESENFYVGHALDSALHALFAQAQLELQYRDRHLSRDDE
                     NIAARAGVAVRAFAARLPEIRTLLDSDVLAAYHGDPAAGSVDEVLLCYPGVLAMIHHR
                     LAHELYKLDLRLLARIVAELAHGATGIDIHPGARIGKGFFIDHGTGVVIGETTVIGDR
                     VRVYQAVTLGAKRFPRDAQGHLEKGLARHPIVEDEVVIYAGATILGRVTLGRGAVIGG
                     NVWLTHDVEPGANVTQAISRNDGVQPRVAASVS"
     gene            complement(984..1460)
                     /locus_tag="VKJ77_16610"
     CDS             complement(984..1460)
                     /locus_tag="VKJ77_16610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006495730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HMC46945.1"
                     /translation="MAVELEERVVDESHSALDAARAAAAANQLPYAGGVSPRDAFALL
                     ESGSAVLVDVRTAEERKFVGSVPGSIHVAWATGTSLTRNPRFVRELEAKTGKDAVVLL
                     LCRSGNRSALAAEAATKAGFTQVFNVLEGFEGRLDSQQRRGVQDGWRFQGLPWIQD"
     gene            complement(1700..>2250)
                     /locus_tag="VKJ77_16615"
     CDS             complement(1700..>2250)
                     /locus_tag="VKJ77_16615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC46946.1"
                     /translation="LLAGIGFFRAIPVLMLIFWTFFLLPVLLHINVPGLATVVAALSL
                     IGGAYLSHSVHAGIEAVGREQRQAALSLGLTRWQAMRHVLLPQAVRIMAPSFINQWVS
                     LVKDTSLAYIVGVPELAFLANQVNSRLMIYPVQIFLFVGLVYLILCTSLDALATRLLL
                     GRAQSAEPRVTAPAVAIVPSPD"
BASE COUNT          502 a          709 c          636 g          403 t
ORIGIN      
        1 tgcggacgac ttcggtcatg acacgctcgc cgcaacgcgc ggttgcacgc cgtcattgcg
       61 cgagatggcc tgagtaacgt tagcgcccgg ttcaacgtcg tgcgtcagcc atacgttgcc
      121 gccaatcacc gcaccccggc cgagcgtgac gcggccaaga atcgtggcgc ccgcatagat
      181 cacgacttca tcttccacga tcggatgccg cgccagccct ttctccagat gcccttgcgc
      241 atcgcgtggg aaacgtttcg cgccgagcgt gacggcctga tacacacgca cgcgatcgcc
      301 gatgaccgtg gtctcgccga tcaccacgcc cgtcccatga tcgataaaaa atccttttcc
      361 tatccgggcg cccggatgga tgtctatgcc ggttgcgccg tgcgccagtt cggccacaat
      421 gcgcgccagc aggcgaaggt cgagcttgta cagctcgtgc gccagccggt gatgaatcat
      481 ggcgagaacg ccggggtagc aaagcagcac ctcgtccaca ctgccggcgg ccggatcgcc
      541 gtgataggcg gcaagcacgt cgctatcaag gagcgtgcga atctcgggaa gcctggccgc
      601 gaacgcgcga accgcaacgc cggcacgcgc ggcgatgttt tcgtcgtcac gcgacagatg
      661 acgatcgcgg tattgcaact ccagttgcgc ctgggcgaat agagcatgca aggctgagtc
      721 cagtgcatgc cccacataga aattttcgct ttcctgacgc aggtcgtgcg gtccaagccg
      781 catcggaaag agcacgccct tcaaggtctc tacaatattt gccagcgcct cgcgcgcggg
      841 tagttcgcgc ccgcccggtt cgagcgaacg cttctgcact tcgcgccatt gctggcgcac
      901 cgtctggagc gattggacga tgtcgtcgat gtcaaatgcg gccacagtcg gagatccttc
      961 ggcatcaagc cattagagtt tgatcaatcc tgaatccacg gcaaaccctg aaagcgccag
     1021 ccatcctgca cgcctcgccg ctgttgcgaa tccagtcgcc cttcgaaacc ctcaaggacg
     1081 ttgaacactt gagtaaagcc tgctttcgtc gccgcttccg ctgcaagcgc tgaacgattg
     1141 ccgctgcggc agagcagcaa cacaactgcg tccttgcccg tctttgcttc cagctcccga
     1201 acaaagcgcg ggttgcgcgt aagcgacgtg cctgtcgccc aagccacgtg gatgctgcct
     1261 ggtacggaac ccacgaactt gcgctcttcg gccgttctga catccacaag caccgccgaa
     1321 cccgactcga gcagcgcaaa cgcgtcgcga ggtgaaacgc ctcccgcgta aggcagctgg
     1381 ttcgctgccg ctgcggcacg cgccgcgtcc aatgccgaat gagattcgtc aactacgcgt
     1441 tcttccaatt caactgccat gaactctcct tgtactgtca cttgaaaact catcgaggca
     1501 agatggttac caaaggaaat gcaaccgtct atagccatca attgacacta tgaaagaggc
     1561 cgatcagaag ctgaaccaat aaaaacgtat ttctaaagca ggcttcggca catcggcaat
     1621 cgttggacga gaaatgatcg tgcaacgtag ggacgacttt cgcgtaatta ttgaaaggaa
     1681 ttgaggccga ggtttggcct caatctggag acggaacgat cgccacggcg ggcgctgtca
     1741 cgcgtggctc ggcgctttgc gcgcgcccca gcagcaggcg agtcgccagc gcatcgagcg
     1801 atgtgcacag aatcaaatag acgaggccca cgaacaggaa tatctgcacc ggatagatca
     1861 tgagccggct atttacctgg ttggcgagaa acgcgagttc cggcacgccg acgatgtacg
     1921 ccagcgacgt atccttgacg agcgacaccc actggttaat aaacgacggc gccatgatgc
     1981 ggacagcctg cggcagcagt acatgacgca tcgcctgcca acgcgtcaac cccagcgaca
     2041 gcgccgcttg gcgctgctct ctccccactg cttcgatgcc cgcgtgaacc gaatgcgaca
     2101 ggtaggcacc accgatcagc gatagcgcgg ccacgaccgt cgccaagccg ggaacgttga
     2161 tgtgaagcaa aaccggcaac aggaagaagg tccagaaaat cagcatcagc acgggtatgg
     2221 cacgaaagaa tccgattccc gcgagcagga
//
LOCUS       DATGBK010001191         2214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_199720, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001191 DATGBK010000000
VERSION     DATGBK010001191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199720"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1164)
                     /gene="bamA"
                     /locus_tag="VKJ77_16620"
     CDS             complement(<1..1164)
                     /gene="bamA"
                     /locus_tag="VKJ77_16620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006758559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HMC46947.1"
                     /translation="MFKPHRFVPKSAVAAALAATGMAAHATTPFVVQDIRIDGLQRIE
                     PGSVFAYLPIKQGDTFTDDKASEAIRALYATGFFNDVQIATQGNVVVVQVQERPAISQ
                     IDFSGIHEFEKDNLAKALRAVGLSQGRSYDKALVDKAEQELKRQYLTRGFYAAEVTTT
                     VTPVDRNRVQILFSVAEGPSAKIRQINFIGNKVVSTSTLRDEMQLSTPNWFSWYTKND
                     LYAKDKLTGDLENVRSYYLNRGYLEFNIDSTQVSISPDKKDMYLTIALHEGEPYKISA
                     IKLSGNLLDRQAELTKLIKIKPGDRFSAEKLQATTKAIVDKLGEYGYAFAQVNAQPQI
                     NQADHTVDLTLNVDPSRRVYVRRVNIVGNTRTRDEVVRREMRQLESSWFDSSRL"
     gene            complement(1265..>2214)
                     /gene="rseP"
                     /locus_tag="VKJ77_16625"
     CDS             complement(1265..>2214)
                     /gene="rseP"
                     /locus_tag="VKJ77_16625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HMC46948.1"
                     /translation="FEGGETIVSMRDVQGSSDASGETHQVRSWSDLRWKLLDASFDHR
                     RVVLTAKTNEGTFDFPLSVGKIDDQDVDQDFMDKLGFEPGGGTLAVAGVEAGSAAAKA
                     GLQAGDVLRAIDGKKIDNAMGFIDYVQHRPGTPVSLTVERNGAQRAVQIVPELKQDAA
                     THRDVGRIGASLATRIPAVDVRYGPVESLQLGVKRTWDISIYSLRMFGRMITGEASLK
                     NLSGPVTIADYAGKSARLGLSAFLSFLALVSISLGVLNLLPIPVLDGGHLLYYLVEAA
                     TGKAVSDRWQLVLQRAGLVCIVALSMIALFNDLARLIRF"
BASE COUNT          446 a          692 c          630 g          446 t
ORIGIN      
        1 cagccggctc gaatcgaacc atgagctttc gagctggcgc atttcccggc gcaccacttc
       61 gtcgcgtgta cgcgtattgc cgacgatgtt cacgcgccgc acatacacac ggcgactcgg
      121 gtccacattc agcgtcaggt cgacggtgtg atcggcctga ttgatctgcg gctgtgcgtt
      181 gacctgtgcg aacgcgtagc catattcacc gagcttgtcg acgatggcct ttgtggtcgc
      241 ctgcagcttt tcagccgaga aacggtcacc cggtttgatc ttgatgagct tcgtcagctc
      301 ggcctggcgg tcgagcagat tgcccgagag cttgatcgca ctgatcttgt acggttcgcc
      361 ttcgtgcagc gcgatcgtca ggtacatgtc cttcttgtcg ggcgagatgg acacctgcgt
      421 cgagtcgatg ttgaactcga gataaccgcg attcaggtag tacgagcgta cgttttcaag
      481 gtcgcccgtg agcttgtcct tcgcgtacag gtcgttcttc gtgtaccacg agaaccagtt
      541 cggcgtggac aactgcatct cgtcgcgcag cgtgctcgtg ctgaccacct tgttgccgat
      601 gaagttgatc tggcgaatct tcgcgctcgg accttccgcc accgagaaca ggatctgcac
      661 gcggttgcgg tcgaccggcg tgactgtagt cgtgacttcg gccgcgtaga agccgcgcgt
      721 caggtattga cgcttgagct cctgctcggc tttgtcgacg agcgccttgt cgtacgagcg
      781 gccctgcgac aagcctaccg cgcgcaacgc cttcgccaga ttgtcctttt cgaactcgtg
      841 gatgcccgag aagtcgattt gcgaaatggc cggacgctcc tgcacctgca cgaccaccac
      901 gttgccctgt gtggcgatct ggacgtcgtt gaagaagccc gttgcataaa gcgcgcgaat
      961 cgcctcggag gctttgtcgt cggtgaacgt gtcgccctgc ttgataggca agtaggcgaa
     1021 taccgaaccg ggttcaatgc gctgaaggcc gtcaatccgg atgtcctgca cgacaaacgg
     1081 cgttgtcgcg tgcgccgcca ttccggttgc ggccaatgct gcggccacag ccgacttagg
     1141 aacaaagcga tgaggtttga acaacgtgct tccccagtgt gtatagctgc atcaagccgg
     1201 acggcgttcg ttcaagcgcc gccagacagg atgaaaaagg atcaaagtga aacggtaagc
     1261 ccgatcaaaa gcggatcagg cgggcaaggt cattaaagag cgcgatcatc gacaaggcga
     1321 cgatgcaaac aagacccgcc cgctgcaaaa ccagctgcca gcgatctgac acggccttgc
     1381 cggttgcggc ttcaaccaaa taatataaca gatgcccacc gtcaagaacc ggaatcggta
     1441 acaagttcaa cacgccgagg ctgatactca cgagcgcgag gaatgaaaga aacgccgaca
     1501 aaccaagccg cgcgctcttg cccgcgtagt cggcgatcgt caccggcccc gaaagatttt
     1561 tcagcgacgc ttcgcccgtg atcatccgcc cgaacatgcg cagcgaataa atgctgatgt
     1621 cccaggttcg tttgacgccc agctgcagac tttcgaccgg accgtaacgc acatccaccg
     1681 ccggaatccg agtcgcgagc gacgcgccga tccggccgac atcgcgatgc gtggcagcgt
     1741 cctgcttgag ctccggcacg atctgcaccg cacgctgtgc gccgttgcgc tcgacggtca
     1801 gcgagaccgg cgtacccgga cgatgctgca cgtaatcgat aaaacccatc gcgttatcga
     1861 tctttttgcc gtcgatagca cgcagcacgt cacccgcctg caagcccgct ttcgctgctg
     1921 cgctgcccgc ttccacaccg gctaccgcca gcgtgccgcc gcccggctcg aagccgagtt
     1981 tatccatgaa atcctggtcg acgtcctgat cgtcgatctt gcccacgctt aaggggaaat
     2041 cgaacgtacc ttcgttcgtc ttggccgtca gcaccacgcg gcgatgatca aacgacgcgt
     2101 cgagcagttt ccagcgcaga tcggaccacg agcgcacctg atgcgtctcg ccactcgcgt
     2161 cgctgctgcc ctgcacatcg cgcattgaaa cgatcgtctc gccaccctcg aagc
//
LOCUS       DATGBK010001192         2246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176180, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001192 DATGBK010000000
VERSION     DATGBK010001192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176180"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..1241
                     /locus_tag="VKJ77_16630"
     CDS             159..1241
                     /locus_tag="VKJ77_16630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC46949.1"
                     /translation="MARDNFSNDRRATITDVAREAGTGKTSISRYLNGETGVLSTELR
                     ERIEEAIAKLDYRPNQMARGLKRGRNRLVGMLVADLTNPYTVEVLQGVEAACHAYGYM
                     PLICHAANEVDLERRYLQLLSTYRVEGVIVNALGVKEETLETLARGGVPVVLVDRSVD
                     GLVTDMVGLDNTEAVRMAIHHLVSQGFDELLFVVQPYAQVSSRRVREAAFRDTIGALG
                     VSGVSSATIVLDLDNDETLAEIDARIDAAQGRNRRVALFAANAPVALRVALHLKELHG
                     ADWQRRVALMSIDDSEWAELAGMTTVRQPTYTIGERAVEFLHERIEGAVVAARECLLP
                     GELIVRTSTSTSKTASTSPPTNNGGT"
     gene            1262..2089
                     /locus_tag="VKJ77_16635"
     CDS             1262..2089
                     /locus_tag="VKJ77_16635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfC family intramembrane metalloprotease"
                     /protein_id="HMC46950.1"
                     /translation="MVSALTLVCLTIATLLIAALPIWLYRKTKPRFGFERRDVIVGIA
                     VFALFSMVIERGLHGLVLSNATTVGLLMNPAIFVIYGALATGICEEVGRYAGMKWLIK
                     RDPASLQRPGMALGYGIGHGGAEAWLVGVLVQLQWILYALLADRGMLDQYFTSVPAES
                     LLRLHAVLGGLAPETAALFLVERAAAFVFQVGLSVGMWHMLRERFRFTLPFMIIAHAL
                     IALPVALYQAQLIPLLAADAVYLVFGLIVMRALRRYFLGVAAAANRAARVAREKAGD"
     gene            2091..>2246
                     /locus_tag="VKJ77_16640"
     CDS             2091..>2246
                     /locus_tag="VKJ77_16640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010115177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3022 domain-containing protein"
                     /protein_id="HMC46951.1"
                     /translation="MDDEYQYDCPSADIELLARVVSDLFPEQTQFSERPGDDGQLSLV
                     IHYVAMRF"
BASE COUNT          407 a          625 c          750 g          464 t
ORIGIN      
        1 cgcggcggag aacctgatcg gcgcgttgaa tggcacgctg acgaacaaca tggtgaatcc
       61 ggaagcattg aagcgctgag cggcttgatt gcaagcttgc tgcaatgaac aaagcgcgcc
      121 ttggcgcgct ttgtttttat cgggtgtcga acgagaacat ggcaagagac aatttttcga
      181 atgaccggcg cgcgaccatc accgatgtcg cgcgcgaagc cggcaccggc aagaccagca
      241 tctcgcgtta tctgaacggc gagacaggcg ttttgtcgac ggaattgcgc gaacggatag
      301 aagaggcaat cgcgaagctc gattaccgcc cgaaccagat ggcgcgcggg ctgaaacgcg
      361 gccgcaaccg gcttgtcgga atgctggtcg cggacctgac gaatccttac accgtcgagg
      421 tgctgcaggg cgtggaagcg gcctgtcacg cgtatggata tatgccgctg atctgccacg
      481 cggcgaacga ggtcgatctg gagcggcgat acctgcaact gctgagcacg tatcgcgtgg
      541 agggcgtgat cgtgaatgcg ctcggcgtga aggaggagac gctggaaacg ctcgctcgag
      601 gcggtgtgcc tgtggtactg gtggaccgct cggtggacgg gcttgtcacc gatatggtcg
      661 ggcttgacaa caccgaagcg gtccggatgg cgatccatca tctggtgagc cagggcttcg
      721 atgaactgct gtttgtcgtc cagccgtacg cgcaggtcag ctcgcgacgc gtgcgcgaag
      781 cggcatttcg tgacactatc ggcgcgctcg gcgtttctgg agtgtcaagc gccacgatcg
      841 tgcttgatct ggataatgac gaaacccttg ctgaaattga tgcgcgcatt gacgccgcgc
      901 aagggcggaa tcgccgcgtc gcgctgttcg cggcgaacgc gccggtagcg ttgcgggtcg
      961 cgctgcatct gaaggagctt catggcgccg actggcagcg gcgggtggcg ttgatgagta
     1021 tcgatgactc cgagtgggcc gagctcgccg gcatgacgac cgtgcgccag ccgacctata
     1081 ccataggcga gcgcgccgtc gagttcctgc atgagcgcat tgaaggcgcg gtcgtggcgg
     1141 cgcgagagtg ccttctgccg ggcgaactga tcgtgcggac atcaacatcg acatcgaaga
     1201 ccgcatcgac atcgccacca acaaacaatg gcggcacata gtttttgagg aaatttaatt
     1261 aatggtaagt gccttgacgc tggtctgtct caccatcgcg acgttgctga ttgccgcgtt
     1321 gcccatctgg ctgtatcgca agacgaaacc ccggtttggc ttcgagcgtc gggacgtgat
     1381 tgtcgggatc gcggtctttg ctctgttttc gatggtgatc gaacgcggcc tgcacgggct
     1441 cgtgctgagc aacgcaacca cggtcggcct gctgatgaat ccggccattt tcgtgatcta
     1501 tggcgcgctt gccacgggca tctgcgagga agttgggcgc tatgccggca tgaaatggct
     1561 gatcaagcgc gatcctgctt cattgcaacg cccgggcatg gcgcttggct atggaatcgg
     1621 ccacggcggc gcggaagcgt ggctcgtcgg tgtgctggtg caactgcagt ggatcctgta
     1681 cgcgctgctc gccgatcgtg gcatgctcga ccaatatttc acgagcgtcc cggccgagtc
     1741 gctgctgcgg ctgcacgccg tgctcggcgg tctcgcaccg gaaaccgccg cgttgttcct
     1801 ggtcgagcgg gcagcggcat tcgtgttcca ggtgggattg tcggtgggaa tgtggcacat
     1861 gctgcgggag cgttttcgct tcacgctgcc gttcatgatc atcgcgcatg cgctgatcgc
     1921 gttgcccgtt gcgctgtatc aggctcagtt gattccgctg ctcgccgccg acgccgtgta
     1981 tctcgtgttc ggactgatcg tgatgcgtgc gcttcggcgc tatttcctgg gcgtggcggc
     2041 cgccgcgaat cgagcggcgc gtgtggctcg tgaaaaggca ggagactgag atggacgacg
     2101 aatatcaata cgactgcccg agcgccgata tcgaattgct ggcgcgcgtg gtcagcgacc
     2161 tgttcccgga gcagacgcaa ttctccgaac gcccgggcga cgacggccag ctttcgctcg
     2221 tgattcatta cgtggcaatg cgtttt
//
LOCUS       DATGBK010001193         1558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_222899, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001193 DATGBK010000000
VERSION     DATGBK010001193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222899"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..640)
                     /locus_tag="VKJ77_16645"
     CDS             complement(20..640)
                     /locus_tag="VKJ77_16645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HMC46952.1"
                     /translation="MKLIIGDKNVSSWSMRPWLVLKHFGIPFEEVMIRLGRPDSSANI
                     LAHSPSGKVPCLVTDAGDAVWESAAIMETLAELFPQHAMWPRDAAARAHARSISAEMH
                     AGFADLREQMSMNIQRQAFGQELTAGALANVKRIDLIWRNCLDAHGGPFLFGKEFGIA
                     DAMYAAVVMRFNSYAPKLSEAALAYAARITALPEVAEWIEGARNER"
     gene            complement(684..>1558)
                     /locus_tag="VKJ77_16650"
     CDS             complement(684..>1558)
                     /locus_tag="VKJ77_16650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="complex I NDUFA9 subunit family protein"
                     /protein_id="HMC46953.1"
                     /translation="KNVRIATRRRENAAHLTLLPVDVIETNVCDPVQLAAFVSQADSV
                     INLVGILQGKRGDPYGPQFAKAHVELPSKIVAACQAKGVRRLIHMSALGADPKGPSMY
                     LRSKGDGEKAVRESNLATTIFRPSVVFGPEDNFLNQFAFLERIFPVIPLACSQAQFQP
                     VFVGDVAKAFANVLDLDAASGRVYELAGPTVYTLEELVRFSGAAIGKNAKIIRLPDML
                     GRLQAMSLELAPGEPMMSRDNLDSMKTPNVASGPMAPELGIEPASIEDIAPMYLTGSS
                     SRSRFNTFRASAGR"
BASE COUNT          322 a          493 c          456 g          287 t
ORIGIN      
        1 ccgcccacgg cgtaaatgtt catcgctcgt tccgtgcgcc ttcaatccac tccgccacct
       61 ccggcaacgc ggtgatgcga gcggcgtaag caagcgccgc ctcgctcagc ttgggtgcgt
      121 aggaattgaa gcgcatgacg accgccgcgt acatcgcgtc ggcaataccg aactccttgc
      181 cgaacaagaa cgggccgccg tgcgcgtcga ggcaattgcg ccagatcagg tcgatccgtt
      241 tcacgttcgc caacgcaccc gccgtgagtt cctggccgaa cgcctggcgc tggatattca
      301 tcgacatctg ttcgcgcaga tcagcgaaac ccgcgtgcat ttccgcgctg atgctgcgag
      361 cgtgcgcccg cgcggcggca tcgcgcggcc acatggcgtg ctgcgggaac aactcggcca
      421 gcgtctccat gatcgcggcc gattcccata cggcgtcacc ggcatcggtc acgaggcaag
      481 gcactttccc cgatggcgaa tgcgcgagga tattcgcgga ggaatccggc cgcccgaggc
      541 gaatcatgac ctcctcgaaa ggaatgccga agtgcttgag cacgagccac ggccgcatgg
      601 accacgacga cacattcttg tcaccaataa tgagtttcat cgcaaatatc taagattaag
      661 gcactgctta aggaacacac cattcaacgc ccagcagacg cgcgaaacgt attgaagcgc
      721 gaacgcgacg atgaccccgt gaggtacatg ggtgcaatgt cttcaatgct cgccggttcg
      781 ataccgagtt ccggcgccat cggcccgctc gccacattcg gcgtcttcat ggaatcgaga
      841 ttatcgcgcg acatcatggg ttcgccgggc gcgagttcaa gcgacatcgc ctggaggcgg
      901 ccgagcatat cgggcaaacg gatgatcttt gcgtttttgc cgatcgccgc gccgctgaac
      961 cggaccagtt cttcgagcgt gtacaccgtt ggcccggcta gttcataaac ccggccgctg
     1021 gcggcatcga gatcgagcac gttcgcgaat gccttcgcaa catcgccgac aaaaaccggc
     1081 tgaaactgcg cttgcgaaca agccagagga atcaccggaa agatccgctc gaggaacgcg
     1141 aactgattca ggaagttgtc ttcgggaccg aacaccacgg atggacgaaa gatcgtggtc
     1201 gccagattcg attcgcgcac ggctttttcg ccgtcgccct tcgagcgcag atacatgctc
     1261 ggccctttcg gatccgcgcc aagcgcgctc atgtggatca agcgccgcac gcctttcgcc
     1321 tgacacgcgg ccacgatctt actgggcagc tcgacatgcg ccttggcaaa ttgcggaccg
     1381 taagggtcgc cgcgcttgcc ttgcagaatg ccgaccaggt tgatcactga gtccgcttgt
     1441 gagacgaagg cggcaagctg gacgggatcg cagacattgg tttcgatcac gtccacaggc
     1501 agcagcgtca gatgcgccgc attctcgcga cgccgcgtgg cgatgcgcac gttcttgc
//
LOCUS       DATGBK010001194         5403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176196, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001194 DATGBK010000000
VERSION     DATGBK010001194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5403
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176196"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /gene="araH"
                     /locus_tag="VKJ77_16655"
     CDS             complement(<1..641)
                     /gene="araH"
                     /locus_tag="VKJ77_16655"
                     /EC_number="7.5.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014898126.1"
                     /note="Part of the ABC transporter complex AraFGH involved
                     in the high affinity transport of arabinose; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose ABC transporter permease AraH"
                     /protein_id="HMC46954.1"
                     /translation="MEVRENITNTLVPAKNDKQRWWQQITEYSLVVIFILMFITMSLT
                     VDHFFSIENMLGLALSISQFGMVACTMMFCLASRDFDLSVGSTVAFAGVLCAMVLNAT
                     GNTFIAIIAAVAAGSAIGFVNGAVIAYLRINALITTLATMEVVRGLGFIVSHGQAVGV
                     SSDTFIALGGLTMFGVSLPIWVTLACFIVFGVLLNQTVYGRNTLAIGGNPEASR"
     gene            complement(669..2186)
                     /gene="araG"
                     /locus_tag="VKJ77_16660"
     CDS             complement(669..2186)
                     /gene="araG"
                     /locus_tag="VKJ77_16660"
                     /EC_number="7.5.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015612 - ABC-type L-arabinose transporter
                     activity [Evidence IEA];
                     GO_process: GO:0042882 - L-arabinose transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose ABC transporter ATP-binding protein
                     AraG"
                     /protein_id="HMC46955.1"
                     /translation="MSATLRFDNIGKVFPGVRALDGVSFDVNAGEVHGLMGENGAGKS
                     TLLKVLGGEYQPDSGRVLIDGNEVKFASAAASIAAGVAVIHQELQYVPDLTVAENLLL
                     GSLPNTFGWVHKREGKKHVRERLLQMGVDLDPNAKLKKLSIAQRQMVEICKALLRNAR
                     VIALDEPTSSLSHRETEVLFKLVRELKADNRALIYISHRMDEIYELCNTCTIFRDGRK
                     IASHANLAEVPRDTLVQEMVGREISDIYDYKPRELGDVRFSVKNVEGHALREPTSFEV
                     RRGEIVGFFGLVGAGRSELMHLVYGADHKKAGTIELDGKPIKVRSAGEAIRHGIVMCP
                     EDRKEEGIVAMASVSENINISCRRHYLRAGLFLDRKKEAETADRFIQLLKIKTPSRRQ
                     KIRFLSGGNQQKTILSRWLAEPELKVVILDEPTRGIDVGAKHEIYNVIYQLAERGCAI
                     VMISSELPEVLGVSDRIVVMRQGRIAGELPRGNATEKSVLNLALPVQSEPTAQAA"
     gene            complement(2285..3295)
                     /locus_tag="VKJ77_16665"
     CDS             complement(2285..3295)
                     /locus_tag="VKJ77_16665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006761975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC46956.1"
                     /translation="MKRRMFLTLVATATAASATLFTAPVAQAADDVKIGFLVKQPEEP
                     WFQDEWKFAEMAAKAKGFTLVKIGAPSGEKVMSAIDNLAAQKAQGFVICTPDVKLGPG
                     IVAKAKAAGLKMMTVDDRLVDGSGKPIESVPYMGISAFNIGKQVGDGIAAEIKKRGWK
                     LEETGAIDVTYEQLPTAHDRTAGAVEALVAAGFPKANIVMAPQAKTDTENAFNAANIA
                     LTKNTQFKHWVAFGLNDEAVLGAVRAAEGRGFKADNMIGVGIGGSDSALNEFKKPNPT
                     GFYGTVIISPKRHGEETSELMYTWIKDGKEPPLVTLTTGMLATRDNVADVREKMGLAS
                     AK"
     gene            complement(3419..4189)
                     /locus_tag="VKJ77_16670"
     CDS             complement(3419..4189)
                     /locus_tag="VKJ77_16670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004527760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC46957.1"
                     /translation="MNRLAGKVAVITGAGRGIGAAIASAFVREGAAVVLAELDIALAR
                     ETASRIGSADNVLAVQTDVTQSASVQNAVSEAEAKFGPVDVLVNNAGINVFCDPLTMT
                     DDDWRRCFAVDLDGVWNGCRAVLPGMVERGRGSIVNIASTHSFKIIPGCFPYPVAKHG
                     VIGLTRALGIEYAGRQVRVNAIAPGYIETQLTHDWWNEQADPAKAKQATLDLQPMKRI
                     GRPEEVAMTAVFLASDEAPFINASCITVDGGRSALYHD"
     gene            complement(4186..4863)
                     /locus_tag="VKJ77_16675"
     CDS             complement(4186..4863)
                     /locus_tag="VKJ77_16675"
                     /EC_number="4.1.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008674 -
                     2-dehydro-3-deoxy-6-phosphogalactonate aldolase activity
                     [Evidence IEA];
                     GO_process: GO:0034194 - D-galactonate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-6-phosphogalactonate aldolase"
                     /protein_id="HMC46958.1"
                     /translation="MQIDINLPAPYAPHAGLAAAFELCPLIAILRGVTPADAADHGLA
                     LYEAGFRIMEVPLNSPQPFDSIAAIRKALPADAIVGAGTVLHPDYVAQVKNAGGELIV
                     MPHSDGDVVRAAKAQGLACSPGVATPNEAFIALKNGADVLKMFPAEQLGAHVVKAWRA
                     VIAVQVPLVPVGGISPDNMGPFLTAGANGFGLGSALYKPGQNAATTASHAKAFINGLA
                     VARGQKK"
     gene            complement(4874..>5403)
                     /locus_tag="VKJ77_16680"
     CDS             complement(4874..>5403)
                     /locus_tag="VKJ77_16680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008671 - 2-dehydro-3-deoxygalactonokinase
                     activity [Evidence IEA];
                     GO_process: GO:0034194 - D-galactonate catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2-dehydro-3-deoxygalactonokinase"
                     /protein_id="HMC46959.1"
                     /translation="IGLPGTHAKWAVVSKGRIERFYTFMTGETFGALRDHTILGRTMR
                     ATDQHDLGAFIRGVDTAKDAGHAGLLATIFSTRTLGLTGQLKPEQQADYLSGLLIGHE
                     LRGLNEVLAREQADLAGKALRLIGNDALCERYRLALARFGCHDARTVAHATERGLHRI
                     ALQAGLIQSTASASN"
BASE COUNT         1007 a         1802 c         1477 g         1117 t
ORIGIN      
        1 cgtgacgctt ccgggttacc gccgatcgcg agcgtattac gcccgtacac ggtttgattc
       61 agcagcacgc cgaacacgat gaaacacgcc agcgtgaccc agatcggcag cgacacgccg
      121 aacatggtca agccgccgag cgcgataaac gtatccgacg acacgcccac cgcctgtcca
      181 tgcgacacga taaacccaag cccgcgcacc acttccatcg tagccagcgt agtaatcagc
      241 gcgttgatcc gcaagtacgc aatcaccgcg ccgttcacga agccaatggc cgaacccgcc
      301 gccaccgccg caataatcgc gataaacgtg ttgccagtgg cgttcaaaac cattgcgcag
      361 agcacgcctg cgaacgctac cgtagacccc accgacaagt cgaaatcccg cgaggcgaga
      421 cagaacatca tcgtgcaagc gaccatgccg aactgtgaaa tcgacagcgc caggccgagc
      481 atgttctcga tcgagaagaa gtgatcgacc gtgagcgaca tcgtgatgaa catcaagatg
      541 aagatcacga cgaggctgta ttcggtgatc tgttgccacc accgctgctt gtcgtttttc
      601 gctggcacca gcgtgttggt aatgttttcc ctgacttcca tgatgtcctc catctccact
      661 tttttacttc aggctgcctg cgcagtcggt tcggattgca caggcagcgc aagattcagc
      721 actgattttt cggtcgcgtt cccgcgcggc aattcgcccg cgatacgccc ttgccgcatc
      781 accacgatcc tgtccgatac gcccagcact tccggcaact cggacgaaat catcacgatc
      841 gcgcagccgc gttcggccag ttgatagatc acgttataga tctcgtgctt cgcgcccacg
      901 tcaatgccac gcgtgggttc atcgaggatc acaaccttca gttccggctc agcgagccag
      961 cgcgacagaa tggttttctg ctgattgccc cccgagagga agcgaatctt ctgcctgcgg
     1021 ctcggcgtct tgatcttcag caactggatg aaacggtcgg cggtttccgc ttctttctta
     1081 cgatccagga atagcccggc gcgcaagtaa tgccggcggc acgagatatt gatgttctcc
     1141 gacactgacg ccattgccac gatgccctct tctttccggt cctctggaca catcacgatg
     1201 ccgtgcctga tcgcttcacc cgcgctgcgg accttgatcg gcttgccatc gagctcgatc
     1261 gtgccggcct tcttatggtc cgcgccgtag acgaggtgca tcagttcgct gcggcctgcg
     1321 cccaccagcc cgaagaagcc gacaatctcg ccgcggcgca cttcgaaact cgtcggttca
     1381 cgcagcgcat gaccttccac attcttcacg gagaagcgca catcgccgag ctcgcgtggc
     1441 ttgtaatcgt agatatccga aatttcacgc ccgaccattt cctgcaccag cgtatcgcgc
     1501 ggaacctcgg ccagattcgc gtgcgacgcg atcttgcggc catcgcggaa aatcgtgcat
     1561 gtattgcaca gctcgtagat ctcgtccatg cggtgcgaga tgtagatcag cgcgcggttg
     1621 tccgctttca gctcgcgcac gagcttgaac agcacttccg tctcgcgatg cgacaacgac
     1681 gacgtgggtt catcgagcgc aatcacgcgc gcattgcgca gcagcgcctt gcagatttcc
     1741 accatctgcc gttgcgcgat ggaaagcttc ttgagcttcg cgttcgggtc gagatccaca
     1801 cccatttgca aaagccgctc gcgcacgtgc tttttccctt cgcgcttgtg cacccagccg
     1861 aacgtgttcg gcaaagaacc gagcagcagg ttctcggcga ccgtgagatc gggcacgtac
     1921 tgcaattcct ggtgaatcac cgcgacaccc gccgcaatcg atgcggccgc gctcgcgaac
     1981 ttcacctcgt tgccatcaat caggacacgc ccggaatccg gctgatattc accgcccagc
     2041 actttcagca aagtcgattt gcccgcgccg ttctcgccca tcaggccgtg cacttcgccg
     2101 gcgttgacgt cgaacgacac gccgtcgagc gcgcgcacgc ctggaaaaac cttaccgata
     2161 ttgtcaaaac gcagcgtcgc tgacacatcg cctccttata tttcatgcgg accgcgcagc
     2221 ctatgaagcg cgcggtccgt attgctctac cgatacctga tacgaaaaga gcttacaacc
     2281 gaccttactt agccgatgcc aggcccatct tctcgcgcac gtcagccaca ttgtcacgcg
     2341 tcgccagcat gcctgtggtc agggtcacga gcggcggttc cttgccgtcc ttgatccacg
     2401 tgtacatgag ttccgacgtt tcctcgccat gacgcttcgg gctgatgatc accgtgccgt
     2461 agaagccggt cgggttaggt ttcttgaact cgttcaacgc cgaatccgag ccgccgatgc
     2521 ccacgccaat catgttgtcc gccttgaagc cacggccttc tgcagcacgc actgcaccca
     2581 gcacggcttc gtcgttcagg ccgaacgcca cccaatgctt gaactgggtg tttttcgtca
     2641 acgcgatgtt ggctgcgttg aaggcgtttt cggtatcggt cttggcttgc ggcgccatca
     2701 cgatattggc cttcgggaag cccgcagcga ccagcgcttc cactgcgccc gccgtacggt
     2761 catgcgccgt cggaagctgt tcatacgtca cgtcgatagc gcccgtttct tccagcttcc
     2821 agccgcgttt cttgatctcg gccgcaattc catcgcccac ctgcttgccg atgttgaacg
     2881 ccgaaatgcc catgtaaggg accgattcga tcggcttgcc cgagccatcg accaagcggt
     2941 catccaccgt catcatcttc agcccggcag ctttcgcttt ggcgacaatg cccggtccga
     3001 gcttcacgtc cggcgtgcag atcacgaaac cctgtgcctt ttgcgcggcg aggttgtcga
     3061 ttgcgctcat cactttttca cccgacggcg cgccaatctt caccagcgtg aagcccttcg
     3121 ccttggctgc catttcggcg aacttccatt catcctggaa ccacggttct tcgggctgct
     3181 tcaccaggaa gccgatcttg acgtcatcgg cggcttgcgc caccggcgcc gtgaacaggg
     3241 tcgcgctggc tgctgtggcc gtggcaacca gtgtgaggaa cattctgcgt ttcatggtct
     3301 gtctcctgac ttgagctgtc tagttggtac gaaggtattg gccgcgtctt gttgtcatga
     3361 catcgcacca cggccagtgc gtcatccttt gctgcttatc ttgtgtatct gtccatgttc
     3421 agtcgtggta cagcgccgag cgcccgccat cgaccgtaat gcaactcgca ttgataaacg
     3481 gcgcttcgtc cgaggcgagg aacacggcag tcattgccac ctcctccggc cggccgatgc
     3541 gtttcatcgg ttgcagatcg agcgtcgctt gttttgcctt cgctggatcg gcctgttcgt
     3601 tccaccagtc gtgcgtgagt tgcgtctcga tgtaacctgg cgcgatcgcg ttcacgcgca
     3661 cctgccgccc cgcatattcg atccccagcg cccgcgtcaa tccgatcact ccgtgcttcg
     3721 ccaccgggta cggaaaacaa cccgggatga tcttgaacga gtgcgtagaa gcaatattca
     3781 cgatgctgcc gcgcccgcgt tcaaccatgc ccggcaagac ggcgcgacag ccgttccaga
     3841 cgccgtcgag atcgacggcg aagcaacggc gccagtcgtc gtcggtcatg gtcagcggat
     3901 cgcaaaacac gttgatgccc gcgttgttca ccagcacgtc gaccgggccg aacttcgctt
     3961 ctgcttcgct cacggcgttt tgcaccgacg cgctttgcgt cacgtccgtt tgtacagcga
     4021 gcacgttgtc cgccgatccg atccgcgatg ccgtttcacg cgctaacgca atatccagtt
     4081 ccgccagcac caccgccgcg ccctctcgaa cgaacgcgct ggcaatcgcc gcaccgatgc
     4141 cgcgcccggc gccggttatg accgcgacct tgcccgcgag ccggttcatt tcttctggcc
     4201 tcgcgccaca gctaatccat tgatgaacgc cttcgcgtgc gaggccgtcg ttgccgcgtt
     4261 ttgacccggc ttgtacagcg ccgagccgag accgaagcca tttgcgcccg ccgtcaggaa
     4321 cgggcccatg ttgtccggcg agattccgcc gaccggcacc agcggcactt gcaccgcgat
     4381 caccgcgcgc cacgccttca ccacatgcgc gccaagttgc tcggcgggaa acatcttcag
     4441 cacgtccgcc ccgttcttca acgcgataaa cgcttcgttc ggcgtcgcga cccccggtga
     4501 acacgcgaga ccttgagcct tcgcggcgcg cacgacatca ccgtcgctat gcggcatcac
     4561 gatcaactcg ccaccggcgt ttttcacttg cgcgacgtaa tccggatgca ggaccgtacc
     4621 cgctccgacg atggcatcgg cgggcaacgc tttgcgaatc gccgcgatgc tgtcgaacgg
     4681 ttgcggtgaa ttcaacggca cttccatgat ccggaagccc gcttcgtaca acgccaggcc
     4741 gtggtcggcg gcgtccgccg gcgtcacgcc gcgcaggatt gcaatcaacg gacaaagttc
     4801 gaacgcggca gcgaggccag cgtgcggcgc gtacggcgcg gggaggttga tatcgatttg
     4861 catggtcctg ctcctaatta gatgcgctcg ccgtcgactg gatcaggccg gcctgcagcg
     4921 cgatccgatg caacccgcgc tcggtcgcgt gcgcgacggt ccgcgcatcg tggcaaccga
     4981 agcgcgcgag cgcgaggcga taacgttcgc aaagcgcgtc gttaccgatc agccttaacg
     5041 ccttgcccgc gaggtccgct tgctcacgcg ccagcacttc attgagaccg cgtaattcgt
     5101 ggccgatcaa caggcccgac aggtaatccg cttgttgctc gggcttcagt tgcccggtca
     5161 gtcccagcgt gcgggtgctg aaaatcgtcg cgagcaaccc ggcgtggccc gcgtctttgg
     5221 cggtatcgac accgcgaatg aacgcgccca gatcgtgctg atcggtcgcg cgcatcgtgc
     5281 gcccgagaat ggtgtgatcg cgcagcgcgc caaaggtctc gccggtcatg aaggtgtaga
     5341 accgttcgat gcgtcccttc gacacaaccg cccacttcgc atgcgttccc ggcaagccga
     5401 tca
//
LOCUS       DATGBK010001195         2702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_338163, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001195 DATGBK010000000
VERSION     DATGBK010001195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2702
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338163"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VKJ77_16685"
     CDS             <1..180
                     /locus_tag="VKJ77_16685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46960.1"
                     /translation="SNAGKSWKQSASKPAFGTSVFFISKNLSETVKYVAFRAHGLEDK
                     DRRGYTVVTPFSETL"
     gene            348..2360
                     /locus_tag="VKJ77_16690"
     CDS             348..2360
                     /locus_tag="VKJ77_16690"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019254672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HMC46961.1"
                     /translation="MSTKKPSADSGKNSGYSEASIKVLKGLEPVKQRPGMYTRTENPL
                     HIIQEVIDNASDEALGGYGKQITVTLHADHSVSVEDDGRGIPFGMHPEEGVPVVEIVF
                     TRLHAGGKFDKAAGGAYTFSGGLHGVGVSVTNALSTRMDVTVWRDGKVADLGFSNGDV
                     VKALETRAMNRGEKKSGTRVTAWAYPKYFDSPNLPVGELQRLLRSKAVLLPGVEVVLI
                     NEKTGERQTWKYEDGLRGYLLEGMGGSDLLIPLFEGERFAGNAKSNEETFAEGEGATW
                     VVAWSEEGPLLRESYVNLIPTPAGGTHESGLRDGLFQAVKSFVELHNLQPKGVKLLAE
                     DVFARVSFVLSAKVLDPQFQGQIKERLNSRDAVKLVSSFTRPALELWLNQHVEYGKKL
                     AELVIRQAQARTRAGQKIEKRKSSGVAVLPGKLTDCESTDISRNELFLVEGDSAGGSA
                     KMGRDKEFQAILPLRGKVLNTWETERDRLFANNEVHDIAVAIGVDPHGPDSLGQKADL
                     SNLRYGKICILSDADVDGSHIQVLLLTLFFKHFPQLIEQGNVCIARPPLFRVDAPARG
                     KKPAQKLYALDEGELEAILDKLRKDGVRETQWSISRFKGLGEMSAEQLWDTTMNPDTR
                     RLLPVQVGDLGFDDTVTRMTMLMGKGEAASRRSWLEEKGNEVEADI"
     gene            2447..>2702
                     /locus_tag="VKJ77_16695"
     CDS             2447..>2702
                     /locus_tag="VKJ77_16695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009892382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HMC46962.1"
                     /translation="MDDLFADQEAAPEGEKLTLGDYAERAYLDYAVSVVKGRALPDVS
                     DGQKPVQRRILFAMNEMGLANTAKPVKSARVVGDVLGKYHP"
BASE COUNT          560 a          773 c          890 g          479 t
ORIGIN      
        1 tcgaacgctg ggaagagctg gaagcaaagc gcaagtaagc cggccttcgg gaccagcgtc
       61 ttcttcatat cgaaaaattt gtcggaaaca gtaaaatacg tcgcgtttcg ggcgcacggc
      121 cttgaggata aggatcgccg cggttacacc gtggtgacac cttttagtga aacgctatag
      181 gccaagcgag aggccgtcgc ggtttcgagt taataacgcg caatccggcg cggccgggtt
      241 ggcccgctat gttcacgcat tcgccggttg tccggcgtgg ccgctctctg aattccgcta
      301 ccgaattcga gccgcggcca cccggaccgc cggacccacg tccagacatg tccacgaaaa
      361 aacccagcgc cgacagcggc aagaacagcg gatacagcga agcatcgatc aaggtgctca
      421 agggtctcga gccggtcaag caacggcccg gcatgtacac ccgcaccgaa aatccgctgc
      481 acattattca ggaagtcatc gacaacgcct ccgacgaggc gctcggcggc tacggcaagc
      541 agatcacggt cacgctgcac gccgatcatt cggtgtctgt cgaagacgat ggacgcggta
      601 ttccgttcgg catgcatccg gaagaaggcg tgccggtcgt cgagatcgtg ttcacgcgcc
      661 tgcacgcggg tggcaagttc gacaaggccg cgggcggcgc gtataccttc tcgggcggcc
      721 tgcacggcgt gggtgtctcg gtcacgaacg cgttgtccac gcgaatggat gtgaccgtgt
      781 ggcgcgacgg caaggtcgcg gatctcggct tttcgaatgg cgacgtggtg aaggcgctcg
      841 aaacgcgtgc catgaatcgc ggtgagaaga agtcagggac ccgtgtcact gcttgggcct
      901 atccgaaata tttcgattcg ccgaacctgc cggtgggtga attgcagcgg ctcttgcgct
      961 cgaaggcggt gttgctgccg ggcgtggaag tcgtgctcat caacgaaaaa accggcgaac
     1021 gccaaacctg gaaatacgag gacggcttac gcggttacct gctcgaaggc atgggcggca
     1081 gcgacttgct tatccccttg ttcgaaggcg agcggttcgc gggcaatgcg aagtcgaatg
     1141 aggaaacctt cgccgaaggc gagggcgcaa cgtgggtcgt cgcgtggagc gaagaaggcc
     1201 cgttgctgcg cgagtcgtac gtcaacctga tcccgacgcc cgccggcggc acgcatgaat
     1261 ccggtctccg cgacggtttg ttccaggcgg tcaagagctt cgtcgaactg cacaaccttc
     1321 agcccaaggg cgtgaagctg ctggcggaag acgtgttcgc ccgggtgtcg tttgtgttgt
     1381 cggcgaaggt gctggatccg cagtttcaag ggcagatcaa ggagcgcctc aatagccggg
     1441 acgcggtgaa actcgtgtcg tcgttcacgc gccctgcgct cgaactgtgg ctgaaccagc
     1501 acgtggagta cggcaagaag ctggcggaac tggtgatccg gcaggcccag gcgcgtacgc
     1561 gcgccgggca gaagatcgaa aagcgcaaga gctcgggcgt ggcggtgctg cccggcaagc
     1621 tgaccgattg cgaatcgacg gatatctcgc gcaacgaact cttcctggtc gagggcgatt
     1681 cggcgggtgg ctcggcgaag atgggccgcg acaaagagtt ccaggccatt ctgccgctgc
     1741 gcggcaaggt gctgaacacg tgggaaaccg agcgcgaccg gctgttcgcg aacaacgaag
     1801 tgcacgacat cgcggtggcg atcggcgtgg acccgcacgg tccggacagc ctgggccaga
     1861 aagctgatct ctcgaatctg cgttacggca agatctgcat cctgtcggac gcggacgtgg
     1921 acggctcgca catccaggtc ctgctgctca cgctgttctt caagcacttc ccgcaattga
     1981 tcgagcaggg caatgtgtgc atcgcgcggc cgccgttgtt tcgcgtcgat gcccccgcgc
     2041 gtggcaagaa gcctgcgcaa aagctctacg cactcgacga aggtgagctc gaggcgattt
     2101 tggacaagct gaggaaggac ggtgttcgcg aaacgcaatg gtcgatcagc cgtttcaagg
     2161 ggctgggcga gatgagcgcg gagcaattgt gggacaccac gatgaacccg gacacgcgcc
     2221 gcctgctgcc ggttcaagtc ggcgatctcg gctttgacga cacggtcaca cgcatgacga
     2281 tgctgatggg caagggcgaa gcggcgtcgc ggcgcagttg gctcgaggag aagggcaacg
     2341 aagttgaagc cgatatttga cgctttcttg cttcggcgca cgtgacaccc ggcctgacgc
     2401 tgtatgcaca ctctgaacct cgtcaacgca taacactgga aatctgatgg acgatctctt
     2461 cgcggaccaa gaagccgcgc ccgaaggcga aaaattgacg ctcggcgact acgccgagcg
     2521 cgcgtatctc gactatgcgg tgagcgtggt caaaggccgg gcgctgcccg acgtttcaga
     2581 cggccagaag cccgtgcagc gccgcatcct gttcgcgatg aacgagatgg gtctcgcgaa
     2641 tactgccaag ccggtgaaat cggctcgtgt ggtcggcgat gtgctgggta aataccatcc
     2701 gc
//
LOCUS       DATGBK010001196         1927 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_199756, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001196 DATGBK010000000
VERSION     DATGBK010001196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199756"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..278
                     /locus_tag="VKJ77_16700"
     CDS             <1..278
                     /locus_tag="VKJ77_16700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015878092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46963.1"
                     /translation="LKNAMERVTALARGPLVTGDDLAFLMAAPAAPVGIADALLDLPL
                     PEAIERLERASIERALRATSGNRAETARRLGISRQSLYTKLAAYKLG"
     gene            425..1123
                     /locus_tag="VKJ77_16705"
     CDS             425..1123
                     /locus_tag="VKJ77_16705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46964.1"
                     /translation="MNTFYSATRFAFASMLMATAVACAAQPAAPPPAVPPMPPPPVGQ
                     QAGAVTMMRGSVGRFLINPEGEVDGLLLADNTLVAFPPHVGVQLAASIAPGDDVRITG
                     FAMPGGSIRAQQVEQTRTGQRFVDQPPEGPGSARPLRSSRGVGLVKLGASGRVLRVTT
                     APRGEPDGVLLTDGTVVKLTPPVAAQFANLLQPGTTVAAEGYGTRNRFGESLQATAFG
                     TPGNLTSLYNPLPQ"
     gene            1147..1710
                     /locus_tag="VKJ77_16710"
     CDS             1147..1710
                     /locus_tag="VKJ77_16710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46965.1"
                     /translation="MHWIDPACLPETRGKLTQFLLNPHGELDGFILDHARQVHFPPHL
                     AKQVAKHIAIGDRVRIRGVKPRDADIVAAVTLTSAQGKEIVDEGPQHAHHEHRAERDA
                     RQMDVEGEVVLSLYGPKGELRGALLEGGTSLRMPPHAAAELAAYLTPGVYVQAWGQGV
                     KNRFGSTIEVEEIAYLVDEKSPSPSQQ"
BASE COUNT          354 a          610 c          616 g          347 t
ORIGIN      
        1 aactgaagaa cgcgatggaa cgagtgacgg cgcttgcgcg cggcccgctt gtcaccgggg
       61 acgatctcgc tttcctgatg gccgctcccg cggcgccggt cggcatcgcc gacgccctgc
      121 tcgacctgcc gttgccggaa gcgatcgaac ggctggaacg tgcgtctatc gaacgggcat
      181 tgcgagcgac ctcgggcaac cgcgccgaaa ccgctcgcag gctcggcatc agccgccagt
      241 cgctctacac gaagctggcc gcctacaagc tcgggtaagt gtccagttgc ttgacgcgtg
      301 ctgtcagccg catggacaca tcggtttgtc tcgctcctga agaggcccgt ggaatggggt
      361 tctcccgccc ggcatggtgc ttgcaagaag acttgctcaa cactgtatgc cgggagtttc
      421 aacgatgaac acattttact cagcgacccg cttcgccttt gcgtcgatgc tgatggctac
      481 ggctgtcgcg tgcgctgcgc agccggctgc gccaccgccc gcggtgcccc cgatgccacc
      541 gccaccagtg ggacagcagg ctggcgccgt gacgatgatg cgcggttctg ttggccgctt
      601 cctgatcaac ccggaaggcg aggtcgatgg cttgctgctc gcggacaata cgctggtcgc
      661 atttcctccg cacgtgggag tgcaactggc ggcatcgatt gcgccgggcg acgacgttcg
      721 catcaccggt ttcgcgatgc cgggagggtc gatcagggcg cagcaggtcg agcaaacgcg
      781 aaccggtcaa cgtttcgtgg accagccgcc ggagggtccc ggctccgcac ggccgctacg
      841 ctcctcgcgc ggtgttggcc tcgtcaagct cggcgcgagc ggacgcgttt tgcgcgtgac
      901 tactgcgccg cgcggcgaac cagacggcgt gctgctcacc gatggcaccg tcgtcaagct
      961 gacgccaccg gtcgcagcgc aattcgcgaa cctcctgcaa ccgggcacga cggtagccgc
     1021 tgaaggctat ggaacccgca accgcttcgg cgaatcgttg caggctaccg ctttcggtac
     1081 gccgggcaat ctcacttccc tctacaaccc cttgcctcaa tagtgtcttt aaaaaggagc
     1141 ttcaaaatgc attggatcga tcccgcctgc ctgccggaaa cgcgcggcaa gctcacgcaa
     1201 ttcctgttga acccccacgg cgaactcgat ggcttcattc tcgaccacgc tcggcaggtc
     1261 cacttcccgc cacatctggc aaagcaggtg gcgaagcaca tcgccattgg ggacagggtt
     1321 cggatccgcg gcgtgaagcc acgcgacgca gatattgtcg cggcagtgac cctgacttcc
     1381 gcgcaaggca aagagatcgt ggatgaaggc ccgcagcatg cacaccatga gcaccgggca
     1441 gaacgtgatg cgcggcaaat ggatgtcgaa ggggaagtcg tgctgtcgct ctatgggcca
     1501 aaaggagaac tgcgcggcgc gctgctcgag ggcggcactt cgctgcgtat gccgccgcac
     1561 gcggcggcag agctggcggc ttatctcacc cccggcgttt atgtgcaagc gtgggggcaa
     1621 ggcgtgaaga accggttcgg ttcgacgatc gaggtagaag aaatcgctta tctcgtcgat
     1681 gaaaaatctc cgtctccttc gcagcaatga cgccatgacc tttccggccg cggttgcgtt
     1741 cggtgacccc aggcacgcgc ggcagtatct tttgtaggcg ctatcgcgtg cggatagatt
     1801 cgggcccggg cgcagcctat ttgcctgcgc ccgaagatcg gagcggaaaa atgatcatgg
     1861 cggcgaccag gccgagtgac ccgccgagaa gtgtttccca ggcgcgggct gcaagcaggg
     1921 ggactga
//
LOCUS       DATGBK010001197         1609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_292266, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001197 DATGBK010000000
VERSION     DATGBK010001197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292266"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            19..465
                     /gene="accB"
                     /locus_tag="VKJ77_16715"
     CDS             19..465
                     /gene="accB"
                     /locus_tag="VKJ77_16715"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009888964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HMC46966.1"
                     /translation="MDLRKLKTLIDLVSESGISELEVTEGEGKVRIVKNAAPVYMQAP
                     QYMQQPMQQAPQYGQPGEAGNAGAPAAPATPAAVVPQGHVVTSPMVGSFYRAPSPGAD
                     AFVQVGDTVKEGQTLCIIEAMKLLNEIESDKSGIVKEILVENGQAV"
     gene            674..>1609
                     /locus_tag="VKJ77_16720"
     CDS             674..>1609
                     /locus_tag="VKJ77_16720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HMC46967.1"
                     /translation="MFEKILIANRGEIALRIQRACRELGVKTVIVYSEADKEAKYVKL
                     ADEAVCIGPAPSNLSYLNMPALISAAEVTDAEAIHPGYGFLSENADFAERVEQSGFTF
                     IGPRPETIRLMGDKVSAKQTMIKTGVPCVPGSEGALPDDPKEIVKIARAVGYPVIIKA
                     AGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNPQVYMEKFLENPRHIEIQILADS
                     FRNAIWLGERDCSTQRRHQKVIEEAPAPGIARRLIERIGDRCADACKKMGYLGAGTFE
                     FLYENNEFYFIEMNTRVQVEHPVTELITGVDIVQEQ"
BASE COUNT          347 a          469 c          500 g          293 t
ORIGIN      
        1 ttgaaagggg aattttcgat ggaccttcgc aaacttaaaa cgcttatcga cctcgtctcg
       61 gaatccggca tctcggagct ggaagtcacc gaaggcgaag gcaaggttcg catcgtcaag
      121 aatgccgcgc cggtctacat gcaggccccg cagtacatgc agcaaccgat gcagcaagcg
      181 ccgcaatatg gccagccggg cgaagcaggc aatgcgggtg cccccgccgc gccggcgacg
      241 ccggcagccg tcgtgccgca aggtcacgtg gtgacctcac cgatggtcgg ctcgttctac
      301 cgcgcaccgt cgccgggcgc cgacgctttc gtgcaggtag gagacaccgt caaggaaggc
      361 cagacgcttt gcatcatcga agcaatgaag ctgctcaatg aaatcgagtc ggacaagtcg
      421 ggcatcgtga aggaaatcct cgttgagaac ggccaggccg tctagtacgg tcagccgctg
      481 ttcttgatcg gcgattgatt ttccgcgatg ctgccggacg aaagcgtatt cagttgtcgt
      541 gcgcccagcc ggtggccgca gcactcgggc gctcgcctga tttgtttgac taaccggcga
      601 gacgcgccgc cgatctccca ggaccgccgc gggcaaccgt cccggcgttc catcgatgag
      661 tcgaaacctt gctatgtttg aaaaaatcct cattgcgaac cgtggtgaaa ttgcgcttcg
      721 aatccagcgc gcgtgccgcg aactaggcgt caagacggtc atcgtctatt cggaagccga
      781 taaagaagcc aagtacgtga agttggccga tgaagccgtg tgtatcggac cggctccgtc
      841 caacctcagc tatctcaaca tgccggcgct gatcagcgca gccgaagtca ccgatgccga
      901 agcgatccac cccggctacg gtttcttgtc ggagaacgcg gactttgccg agcgtgtgga
      961 gcaatccggc ttcaccttca tcggaccgcg tccggaaacc atccgtttga tgggcgacaa
     1021 agtctccgcc aagcaaacga tgatcaagac gggcgtgccg tgcgtcccgg gttcggaagg
     1081 cgcattgccc gacgatccca aggaaatcgt gaagattgcc cgcgcggtcg ggtatccggt
     1141 gatcatcaag gcggcgggcg gcggcggtgg gcgcggcatg cgcgtcgtgc acaccgaagc
     1201 ggcgctggtg aacgcggtga acatgacccg cgaagaagcc ggccgtgcat tcggtaatcc
     1261 gcaggtctac atggagaaat tcctggagaa cccgcggcac attgaaatcc agattcttgc
     1321 agactcgttc cgtaacgcaa tctggctggg cgaacgcgat tgctccacgc agcgccgtca
     1381 ccagaaggtg attgaagaag cgccggcgcc gggtattgcg cgacgcctga tcgagcggat
     1441 tggcgatcgt tgcgccgacg cctgcaagaa aatgggttat ctcggcgcgg gcacgttcga
     1501 attcctgtac gagaacaacg agttctattt catcgaaatg aacacgcgcg tgcaggtcga
     1561 gcatccggtg acggagctga tcaccggcgt ggatatcgtg caggaacag
//
LOCUS       DATGBK010001198         2713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_153058, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001198 DATGBK010000000
VERSION     DATGBK010001198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153058"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /locus_tag="VKJ77_16725"
     CDS             <1..535
                     /locus_tag="VKJ77_16725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019937353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC46968.1"
                     /translation="MGAQFAHWRDYASHKRFGMLIKWHAIMPALTAALGYFPGGKLGW
                     MEDTPRGVVRDWIAPQPRFEDAFRNGPHALTEAERATLVEGFAALHGPMLALSVTDDE
                     FGTESAIERLLAYFRNSPITHLRIAPESMGYREIGHFAFFHSRFETSLWQIPLEWLKA
                     RSVRAELGGFVVKTNAR"
     gene            complement(541..1047)
                     /locus_tag="VKJ77_16730"
     CDS             complement(541..1047)
                     /locus_tag="VKJ77_16730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HMC46969.1"
                     /translation="MSFTVQQSTGSKAAQYDELIAQARSLLSDETDRIANAANFSALV
                     YHTLPDLNWSGFYFFDGAELVVGPFQGKPACVRIAMGKGVCGTAAQTRLTQVVQDVHE
                     FPGHIACDSASQSEVVVPLVAKDGSLAGVWDVDSPSVGRFDADDAKGMEALCQVFMEL
                     AWEPRTSA"
     gene            complement(1137..>2713)
                     /locus_tag="VKJ77_16735"
     CDS             complement(1137..>2713)
                     /locus_tag="VKJ77_16735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HMC46970.1"
                     /translation="IAWTHTVSSARRFGIFQLSLDPANPTRYIYDGVSEPMTPVPVTV
                     QTRNADGSLTPITRTLYRSRFGPLVDLSSMSPALAWNAQHAFALRDVNAGNTRSFENF
                     LEWDQARSLNDFIAIQQRLAATPWVNTLAIGRGDPRVWFADIGPVPDVPDALAAACTT
                     PLGRAFDAKAPGVPFLDGSKSACEWRVEASSVQAGALPVSDMPGMARGDYVGNFNDSY
                     WLTNAQAPTTGYPHVAGITGTEQSLRTRFGHMLAAELQVQKGGVTRLALETKVLDSRS
                     MSEQLFRKPILDAVCADASDSTVSVVSIAQGTPGGQPQTVDLAPACKVLREWDGTANT
                     QARGANLWDEFWRRLDGAGLAHFYRVPFDPAAPLATPRGLDTSNPALKPALQQALGGA
                     VLALQRYGFALDSTRGELLHADRNGERIPLFGGCDDAGYFTVMCSLRPVDAAGYAVDR
                     SGHGASYLQVVSFDANGVQADTMLAHSESDDPASPHFGDATRRFAGKQWLRFPFTEEA
                     ITADPGMTTIKLQAPR"
BASE COUNT          546 a          840 c          839 g          488 t
ORIGIN      
        1 catgggggcg caattcgcgc attggcgcga ctacgccagt cacaaacgat tcggcatgct
       61 aatcaaatgg catgcaatca tgccggcgct cacggcggca ctcggctatt ttcccggtgg
      121 caagctcggc tggatggaag acaccccacg cggggtggtg cgcgactgga tcgcaccgca
      181 gccccggttc gaggatgcgt tccggaacgg tccgcacgcg ctgacggagg cggaacgcgc
      241 aacgctggtc gagggttttg ccgcgctgca cgggccaatg ctcgcactca gcgtaaccga
      301 tgacgaattc ggcacggaat cagccattga acgtctgctt gcttacttca ggaacagccc
      361 gatcacccat ctgcgtattg cgccggaatc gatggggtat cgtgagatcg gccactttgc
      421 gtttttccat agccgcttcg aaacatcgct atggcagatc ccgctcgaat ggctgaaggc
      481 tcgctcagtg cgtgccgagc ttggcggttt tgtcgtcaag accaacgccc gatgaggggt
      541 tcaagccgac gtgcgcggct cccacgccag ctccatgaat acctggcaca gcgcctccat
      601 gcctttggca tcgtccgcgt cgaagcggcc gactgacggg ctgtccacat cccagacacc
      661 ggccaggctg ccgtctttgg cgaccagcgg cacaacaacc tcggattgcg atgccgagtc
      721 gcacgcaatg tgtccgggaa actcatgcac gtcctgcacc acctgcgtga gccgggtttg
      781 cgcggcagtg ccgcacacgc cttttcccat cgcgatgcga acgcacgccg gtttgccctg
      841 aaaaggaccg acgacaagtt cggcgccatc gaagaaataa aagccgctcc agttcaggtc
      901 cggcagcgtg tgatacacca gcgccgaaaa gttggcggcg ttggcgatgc gatcggtttc
      961 atcgctgaga agcgagcgcg cctgagcaat gagctcgtca tattgcgcgg cttttgaacc
     1021 agtggattgt tggacggtga aggacatgat ggcgatggtg tgcgccatga ccagctgggt
     1081 catggcggtt gaaagaatga agtctttcga ccatagcaca gcgcgccaaa tccggcttac
     1141 ctcggcgctt gcagctttat cgtcgtcatg cccggatcgg cagtgatggc ttcttcggtg
     1201 aagggaaagc gcagccattg cttgccggcg aagcgccggg ttgcatcgcc gaaatggggc
     1261 gaggccgggt cgtcggattc cgaatgagcg agcatggtgt ccgcctgcac accgttcgcg
     1321 tcaaacgaaa ccacttgcaa atagctcgcg ccgtgaccgc tgcgatcgac cgcgtagccg
     1381 gctgcatcga ccggacggag agaacacatt accgtgaaat aacccgcatc gtcgcaaccg
     1441 ccaaagagcg ggatacgctc cccgttccgg tcagcgtgca gcagttcgcc acgtgtcgag
     1501 tcaagcgcaa aaccgtatcg ctgcagggcg aggaccgcgc caccgagcgc ctgctgaaga
     1561 gcgggcttaa gcgcaggatt ggaggtgtcg agaccacgtg gcgttgcaag cggcgcagcc
     1621 ggatcgaacg gcacgcggta gaaatgcgcc aaccctgctc catccaggcg acgccagaac
     1681 tcgtcccaaa gatttgcgcc gcgcgcttgg gtattagcag taccgtccca ctcacgaagt
     1741 accttgcatg caggcgccaa gtccactgtt tgcggttgac cgccgggcgt gccttgcgcg
     1801 attgaaacca ctgaaaccgt cgaatccgat gcatcagcac agaccgcatc aaggataggc
     1861 ttgcggaaca attgctccga catcgaccgg ctatccaaca ccttcgtctc aagtgcaagc
     1921 cgcgtcacac cacccttctg cacctgtaac tcggccgcga gcatgtggcc aaaacgcgtg
     1981 cgcagcgatt gctccgtgcc ggttatgccg gccacgtgcg gataacctgt agttggcgcc
     2041 tgggcgttgg tcagccagta actgtcgttg aagttgccca cataatcacc gcgcgccatg
     2101 cccggcatgt cggagaccgg caatgctccc gcttgcacac tcgatgcttc cacacgccat
     2161 tcacaagcac ttttcgaacc gtcgagaaac ggcacgcctg gcgctttcgc atcgaacgcc
     2221 cggccgagcg gcgtcgtgca ggccgccgcc aacgcgtcag gcacgtccgg cacagggcca
     2281 atgtcggcga accacacacg cgggtcgccg cgaccgatcg ccagggtgtt gacccacggc
     2341 gtggccgcga ggcgttgctg gatcgcgatg aaatcgttga gggagcgcgc ctgatcccac
     2401 tccaggaaat tctcgaagga gcgcgtgttg ccggcattca cgtcgcgcag cgcgaacgcg
     2461 tgttgtgcgt tccatgcaag cgccggtgac atcgacgaga gatccacgag cggcccaaaa
     2521 cgcgagcggt acagcgtgcg cgtgatcggt gtcaggctgc cgtcggcgtt gcgggtctgg
     2581 accgtgacgg gcacgggtgt catcggttcg ctgacgccgt cgtagatata acgcgtggga
     2641 ttggccggat cgagcgacaa ctggaaaatg ccgaagcgcc gcgcgctcga cacggtatgc
     2701 gtccacgcga tgt
//
LOCUS       DATGBK010001199         1628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_153066, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001199 DATGBK010000000
VERSION     DATGBK010001199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153066"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VKJ77_16740"
     CDS             complement(<1..584)
                     /locus_tag="VKJ77_16740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018439025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46971.1"
                     /translation="MNLRGIAAIYIFEMARTGRTLMQSIVAPVLSTSLYFVVFGAAIG
                     SRITEIEGVSYGAFIVPGLIMLTLLTQSTMNASFGIYFPRFTGTIYEILSAPISGFEI
                     ALGYVGAAATKSIILGLIILATSWLFVPLHIAHPFWMVTYLLLTAVTFSLLGFIIGIW
                     AEGFEQLQIVPLLVITPLTFLGGTFYSISVLPPL"
     gene            complement(581..1507)
                     /locus_tag="VKJ77_16745"
     CDS             complement(581..1507)
                     /locus_tag="VKJ77_16745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC46972.1"
                     /translation="MQSIISVTNLSKTYKSGFRALKNINLDVQPGEIFALLGPNGAGK
                     TTLIGIICGILNASEGSVTVGGRDIVRDYRATRSMIGLVPQELFTEMFETVWATVTFS
                     RGLFGKAANLAHTEKVLRELSLWDKKDNQIRTLSGGMKRRVLIAKALAHEPQILFLDE
                     PTAGVDVELRKDMWEVVRQLRASGVTIILTTHYIDEAEDMADRIGVINKGEIILIENK
                     AELMRKLGQKQMTLNLQNKLDVVPKELSAYQLSLGAGGSDLIFTYDTQVDHTSIPALL
                     ADLGRAGINFRDLQTTQRSLEDIFVGLVSQKK"
BASE COUNT          353 a          452 c          488 g          335 t
ORIGIN      
        1 cacagcggcg gcaatacgct aatcgaatag aatgtgccgc cgaggaatgt cagcggcgtg
       61 atgaccagca gcggcacaat ttgcaactgt tcgaagccct cggcccagat gccgatgatg
      121 aatccgagca ggctgaaggt cactgctgtc agcaacaggt aggtcaccat ccagaacgga
      181 tgcgcgatat gcagcggcac gaacagccag gacgtcgcga gaatgatcag gccgaggatg
      241 atcgatttgg ttgccgcagc cccgacatag ccgagcgcga tttcgaaccc ggagataggc
      301 gccgacagta tctcgtagat cgtcccggta aagcgcggaa aatagatgcc gaatgaggcg
      361 ttcatcgtgc tctgcgtgag tagcgtcagc atgatcagtc ccggcacgat gaaggcgcca
      421 tagctcacgc cctcgatctc ggtgatgcgc gagccgatcg cagctccaaa caccacgaaa
      481 tagagtgacg tcgaaagcac cggcgccacg atgctttgca tcagcgtgcg gcccgtgcgc
      541 gccatttcaa aaatatagat cgcggcgatg cctcggaggt tcattttttc tggctcacca
      601 atccgacaaa aatatcctcc agcgagcgtt gcgtcgtctg cagatcgcga aaattaatcc
      661 ctgcgcggcc gaggtcagcg agcagggcgg ggatgctggt gtggtcgacc tgcgtatcgt
      721 aggtgaagat cagatcgcta ccaccggctc caagcgagag ctgataggcg ctgagttcct
      781 tcgggactac gtcgagttta ttttgcagat tgagtgtcat ttgcttctgg ccaagcttgc
      841 gcatgagctc ggccttgttt tcgatcagga tgatttcgcc cttgttgatt acgccgatcc
      901 ggtcggccat gtcctcggcc tcatcgatgt aatgcgtggt caggatgatg gtcacgcccg
      961 aggcgcgcaa ctgacgcacg acttcccaca tatccttgcg cagttcgacg tcgacgccgg
     1021 cggtcggctc gtcgaggaac aggatttgcg gttcgtgcgc gagcgccttt gcgatcagca
     1081 cgcgccgttt catgccgccc gacagcgttc tgatctggtt gtccttcttg tcccatagcg
     1141 acagctcgcg cagcaccttt tcggtatgcg cgagattggc cgctttgccg aacagtccgc
     1201 gactgaaggt gacggtggcc cagaccgtct cgaacatctc ggtgaacaat tcctgcggca
     1261 ccagcccgat cattgatcgg gtggcgcgat agtcgcgcac gatgtcgcgc ccgccgacgg
     1321 tcacggaacc ttccgatgcg ttcaaaattc cgcagatgat gccgatgagc gttgtcttgc
     1381 cggcgccatt ggggccgagc agcgcaaaaa tctctccggg ctggacatcg agattgatgt
     1441 tcttgagcgc ccggaaaccg gacttatagg tcttggagag atttgtgacg gaaatgatgg
     1501 actgcatcga taagcggtct aatagcgtcc gatggagaat gaatcaagaa agcggggctg
     1561 ccgagcaacc gcacatattc atccgccgcg cgaagcgcca gaggcggcat cggtaatata
     1621 tgaaggtg
//
LOCUS       DATGBK010001200         1945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_315202, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001200 DATGBK010000000
VERSION     DATGBK010001200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315202"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(212..1213)
                     /locus_tag="VKJ77_16750"
     CDS             complement(212..1213)
                     /locus_tag="VKJ77_16750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC46973.1"
                     /translation="MTVQTTTPKSQTEPPKSAKPIGTRLGFSTYLGLMGALIAMIALF
                     SVLSSHFLSYDTFSTIANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALGAAVTSVAA
                     LQWHWGALPAALLGMAGAALTGCVTGAVTVGWRIPSFIVSLGVLEAARGLAYQMTNSR
                     TAYIGDAFDFLSNPIAFGISPSFLIAIAVMIVAQLVLTRTVFGRYLIGIGTNEEAVRL
                     AGVNPRPYKVIVFALMGLLSGLAALFQISRLEAADPNAGSGIELQVIAAVVIGGTSLM
                     GGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGAVIVVAVVLDTYRSKRRIM"
     gene            complement(1210..>1945)
                     /locus_tag="VKJ77_16755"
     CDS             complement(1210..>1945)
                     /locus_tag="VKJ77_16755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC46974.1"
                     /translation="ISGLIGAGRTELMRLIYGADRADSGSISIAHRGAALKTVSIKSP
                     SDAVSQGIALITEDRKGEGLLLPQPIAANISLGNIGAVSKHGFIDARRETELAQKQID
                     AMRIRTSSAAQPVSELSGGNQQKVVIGRWLARDCTVLLFDEPTRGIDVGAKFDIYALM
                     GAQAREGRALVVVSSDLRELMLICDRIGVMSAGRMTGLFERDNWSQDALLAAAFAGYA
                     GRDKILSESIEPGAGTPDTPITEHQS"
BASE COUNT          397 a          615 c          586 g          347 t
ORIGIN      
        1 gaacgggtcg atcactgggc ttgagctttg gttaagaacg cgcaataagt acgcgcaata
       61 agtacgcgaa ataagcacac taagcccaag ccggatgtcg ccgataatag gaacgcgttt
      121 tcttaagcta ctcgtattcg cgcctgcctg gcgcgaatca actatccata gcgctgctgc
      181 acgagcgcta aggagcgggc gttgcctacg cttacatgat gcgccgtttg ctgcggtacg
      241 tatccagcac gacagccacc acaattaccg caccggtgat aatccgcttg gtcggctcgt
      301 tcgcgccgat ctgcgcgagg cctgctgcaa gcaccgaaat gatcaggacg ccgaagaacg
      361 tgctgataac agagccgcgt ccacccatca ggctcgtgcc cccgatcaca acggctgcaa
      421 tcacctggag ttcgatcccc gaacctgcgt tggggtctgc cgcttcgagc cgggatatct
      481 ggaacaaggc tgcgaggccc gagagcaagc ccatcagcgc aaacacgatg actttgtatg
      541 gccgtgggtt gaccccggcc agccgcacgg cttcctcgtt ggtaccgatg ccgatcagat
      601 agcggccaaa aaccgttcgg gtgagcacga gctgcgccac gatcatcacg gcgatagcaa
      661 tcaggaatga aggagaaatg ccgaatgcga tgggattcga gagaaagtcg aaggcgtcgc
      721 caatgtacgc cgtgcgcgag ttcgtcatct ggtaggcaag accgcgtgcc gcttccagca
      781 cacccagcga gacgatgaac gaagggatgc gccaacccac cgtcacggcc ccggtcacgc
      841 agccggtgag cgccgcaccg gccatgccga gcaacgctgc cggcagcgcc ccccaatgcc
      901 attgcaatgc ggcgacgctg gtcacggccg cccccaatgc cagcaccgaa cccaccgaca
      961 gatcgatacc cgcaataatc agcacgaatg tcatgcccac cgacatcacc accagatcgg
     1021 gaatctggtt cgcgatcgtg ctgaaggtgt cgtagctcag gaagtgcgag ctcagcacgg
     1081 agaacagcgc gatcatggcg atcagcgcgc ccatcagccc caggtaggtt gagaaaccca
     1141 gccgggtgcc gatcggcttc gcgcttttgg gcggctccgt ctgcgatttc ggtgttgttg
     1201 tttgtacagt catgactggt gctccgtgat gggggtgtct ggcgtcccgg cgcccggttc
     1261 aatggattcg ctgaggattt tatcgcggcc tgcataaccc gcgaacgccg cggccagcaa
     1321 cgcgtcctgt gaccagttat cgcgttcgaa gaggccggtc atgcgtcccg cggacatcac
     1381 gccgatccgg tcgcagatca gcatcagctc gcgcaggtcg ctggacacca ccaccagcgc
     1441 gcggccttcg cgagcctggg cgcccatcag cgcatagatg tcgaacttgg cgccgacgtc
     1501 gatgccgcgc gtgggttcgt cgaagagcag cacggtgcag tcgcgtgcga gccagcggcc
     1561 gatcaccacc ttctgctgat tgccgcccga gagttcggac accggttgcg cggcgctcga
     1621 cgtgcgaatc cgcatggcgt cgatctgttt ctgcgcaagt tcggtctcgc ggcgggcatc
     1681 gataaaaccg tgcttcgata ccgcgccgat attgcccagt gaaatgttcg cagcgatcgg
     1741 ctggggcagc aacaaacctt cgcccttgcg atcttcggta atgagcgcaa taccctggct
     1801 cacggcatcg gagggcgact tgatgctgac ggtcttgagc gcagcacccc ggtgcgcgat
     1861 cgagatgctg ccgctatccg cccgatccgc gccgtagatc agccgcatga gttcggtccg
     1921 gcccgcgccg atcagcccgc tgatg
//
LOCUS       DATGBK010001201         3592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245568, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001201 DATGBK010000000
VERSION     DATGBK010001201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245568"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..387
                     /locus_tag="VKJ77_16760"
                     /pseudo
     CDS             1..387
                     /locus_tag="VKJ77_16760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014725605.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
     gene            complement(450..1553)
                     /gene="aroC"
                     /locus_tag="VKJ77_16765"
     CDS             complement(450..1553)
                     /gene="aroC"
                     /locus_tag="VKJ77_16765"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HMC46975.1"
                     /translation="MSGNTLGTLFTVTNFGESHGPAIGCVIDGCPPGMELSEADIQIE
                     LDRRKPGTSRHVTQRQEADQVEILSGVFEGKTTGTPIALLIRNTDQRSKDYGNIVETF
                     RPGHADYTYWQKYGIRDYRGGGRSSARLTAPTVAAGAVAKKWLRERMGIETRGFMSAL
                     GEIPIPFVAWEHVRENPFFSPNAEIVPRLEEYMDALRKDGDSIGARIGVMATGVPAGL
                     GEPLYDRLDADIAKAMMGINAVKGVEIGAGFASVAQRGSVHGDEMTPEGFAANNSGGV
                     LGGISSGQDITVSIAIKPTSSIRTPRESIDKAGHSATVETFGRHDPCVGIRATPIAEA
                     LLALVLIDHALRHRAQNGDVVTTTPHIAAHIAK"
     gene            complement(1702..3567)
                     /locus_tag="VKJ77_16770"
     CDS             complement(1702..3567)
                     /locus_tag="VKJ77_16770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC46976.1"
                     /translation="MLRERRFAPFFWTQFLGALNDNVFKVGFTSLVTFQAARFSGVDP
                     KTAAFLISAIFIIPFVLFSATSGQVADKYDKATLTRFVKTFEIVVMLIGGAGFMLHSA
                     PLLYVCTFLMGVHSTVFGPVKYAYLPQHLQPSELVGGNGLVEMGTFVAILIGTIFGGA
                     AAGLTEHGAMLLAACCVTVALIGRVVSGFVPKTAALEPDLKINWNPFSETWRNLALAR
                     QDRTVFLSLLGISWLWFVGATFLTSFFNFAKDVLSANPDVVTVLLGTFSIGIGIGSLM
                     CEKLSKRRVEIGLVPLGSIGISVFAIDLFFASHGIAPAGHLMGVGEFLQIGVHWRILA
                     DLFLLAMFGGFYSVPLYALIQSRSQPTHRARIIAANNILNSFFMIVSALMAVGLTSAG
                     VGIPGLFLTTALLNIVVAAYIYSLVPEFLLRFLAWILVHTFYRIRLVNAERIPEHGGA
                     VLVCNHVSFIDAIVIMSESPRPIRFVMDHRIFRSPLVGWLFRHVKAIPIAPAHEDAKL
                     LEKAYDACGRALADGDLVCIFPEGKLTRTGDINPFRHGISEILKRHSAVVVPIALRGL
                     WGSVFSRHDDNRWPRPIQRGVMSRLTLAVGEPIDPADATPEHLQQIVATLRGARK"
BASE COUNT          804 a         1059 c         1077 g          652 t
ORIGIN      
        1 tagcacgccg ataacgaaac gcttaaaccc gcatcgcaat gcaagccgat cgtgtatccg
       61 aagccggatg ggaagctgac gttcgaccgg ttggcgtcgg tgtttatatc gaatacgaat
      121 cacgaagaaa accagccggc gcatttgacg ctgaaggatg catcggtgcc ggtggatgtg
      181 aatttaagaa cgtatgccgg accggaagga cggtattgcc cggcacaggt gtacgagttc
      241 gtgaagaacg atgacgggag cgagcgcttg cagatcaatg cgcagaactg cgtgcactgc
      301 aagacgtgcg atattaaaga cccgacgcag aatattgtgt gggtaccgcc ggagggtggc
      361 ggtgggccga attatccgaa tatgtgagtg ttcggatttg aggctttaag aaatagcgcc
      421 ggttctttat gttcagaacc ggcgctattt tatttggcga tatgcgcagc gatatggggc
      481 gttgtcgtca ccacatcgcc attctgcgca cgatgccgca acgcatgatc gatcagcacg
      541 agcgcgagca gcgcttcggc aatcggcgtc gcccggatgc caacgcacgg atcgtggcgc
      601 ccgaaggttt caaccgtcgc ggaatgaccg gctttatcga tggactcacg cggcgtgcgg
      661 atgctcgatg tcggtttgat cgcgatcgat acagtgatgt cctgcccgct cgaaatgccg
      721 ccgagcacgc cgccggagtt gttcgcggca aacccttccg gcgtcatttc gtcgccgtga
      781 accgagccgc gttgcgccac gctcgcgaaa cccgcgccaa tttcaacgcc tttcaccgcg
      841 ttgatgccca tcatcgcttt cgcgatatcg gcgtcgaggc ggtcataaag aggctcgccc
      901 agcccggccg gcacgcccgt cgccatcacg cctatgcgcg cgccgatcga atcgccgtct
      961 ttgcgcagcg cgtccatgta ctcctcgaga cgcggcacga tttccgcatt cggcgagaaa
     1021 aacgggtttt cgcgcacgtg ttcccacgca acgaacggaa tcgggatctc gccaagcgcg
     1081 ctcatgaacc cgcgtgtttc gatgcccatg cgctcacgca gccatttctt cgctacagcg
     1141 ccggccgcga cggtcggcgc cgtcagccgc gctgatgaac gtccgcctcc gcgatagtcg
     1201 cggatgccgt acttctgcca ataggtgtaa tcggcgtgcc cgggacgaaa cgtctcgacg
     1261 atattgccgt aatccttgct gcgctgatcc gtattccgga tcagcaacgc gataggcgta
     1321 ccggtcgttt taccttcgaa cacgcccgac agaatctcga cctgatcggc ttcctgacgc
     1381 tgcgtcacat gccgcgacgt acccggtttg cgccgatcca gttcgatctg gatatccgcc
     1441 tcggatagtt ccatgcccgg tgggcagccg tcgatcacgc agccgatcgc gggaccgtgc
     1501 gactcgccga agttcgtgac ggtgaaaagc gtgccgagtg tattgccgga catgagcgtc
     1561 gtcctgaaaa aagcgaaaga gccaatatta tgtcagcgga cggatgatgc gcccacgctc
     1621 gaaacctgtt gtgcataggc ctttcgttgg aaaaagcacc gcttgaggaa ggtcctggtt
     1681 gcgcgaggcc cctctcgcgc cctatttgcg ggcacctcgc agcgtcgcga ctatttgttg
     1741 cagatgctct ggcgtggcgt cggcgggatc gattggctca cctaccgcga gcgtcaggcg
     1801 gctcattacg ccgcgttgaa tcggacgcgg ccagcggttg tcgtcgtgac gcgaaaaaac
     1861 gctgccccac aagccgcgta aagcgatggg tacaaccact gccgaatggc gcttgagaat
     1921 ctcgctgatg ccatggcgga acgggttgat atcaccggtt cgggtgagct tgccttccgg
     1981 gaagatgcac accagatcgc catctgcgag cgcgcggccg caggcgtcgt aggctttttc
     2041 caggagtttt gcgtcctcgt gagcgggcgc gatcggaatg gccttgacgt gacggaacag
     2101 ccagccgacc agcggcgaac gaaaaatccg gtgatccatc acaaagcgga tcggccgcgg
     2161 actttccgac atgatcacga tggcatcgat gaagctcacg tgattacaca ccagcacggc
     2221 gcccccgtgc tcgggaatgc gctcggcgtt gacgagcctg atccggtaga acgtatgcac
     2281 gagaatccac gcgagaaagc gcagcagaaa ctcgggcacg agcgagtaga tataagcagc
     2341 cacgacgata ttcaacaacg ccgtggtgag aaacagcccg ggaatgccga cgcccgccga
     2401 cgtcaggccg accgccatca acgccgacac gatcatgaaa aacgagttga gaatgttgtt
     2461 cgcggcgatg atgcgcgccc ggtgcgtcgg ctggctgcgc gactgaatca gcgcgtagag
     2521 cggcacgctg tagaaaccgc cgaacatggc gagcaggaac aggtcagcga ggatgcgcca
     2581 gtgcacgccg atctgaagaa attcgccgac ccccatcaga tgcccggccg gtgcgatgcc
     2641 gtggctagcg aaaaacaggt cgatggcaaa aacactgatg ccgatcgacc cgagcggaac
     2701 cagtccgatc tcaacacggc gtttcgagag cttttcacac atcagcgaac cgatgccgat
     2761 accaatcgaa aatgtgccga gcagcaccgt cacgacatcg gggttagccg acaggacgtc
     2821 ctttgcgaag ttgaaaaacg acgtgagaaa cgtcgcgccg acgaaccaga gccacgaaat
     2881 cccgagcagg ctcaggaaca cggttcggtc ctgccgcgcg agcgcgagat tacgccacgt
     2941 ctcgctgaac gggttccaat tgatcttcag atcgggctcc agcgctgctg ttttcggcac
     3001 gaaacccgat acaacgcgcc cgatcagcgc aaccgttacg cagcacgccg cgagcaacat
     3061 ggcgccgtgc tcggtcaacc cggccgccgc gccgccaaag atcgtcccga tcaaaatggc
     3121 gacgaacgtc cccatttcga cgaggccatt gccgccaaca agttcggatg gctggagatg
     3181 ctgtggcaga tacgcgtatt tcaccggtcc gaacacggtc gaatgcacac ccatgaggaa
     3241 cgtgcagacg taaagcaggg gcgcgctgtg caacatgaaa cccgcgccgc cgatcagcat
     3301 cactactatt tcgaacgtct tcacgaagcg cgtaagcgtg gctttgtcgt atttatcggc
     3361 gacctggccc gatgtcgcgg aaaaaagcac aaaggggatg atgaagatgg cggaaatcag
     3421 gaaagcggcg gttttaggat cgacacccga aaagcgtgca gcctgaaacg tgaccagcga
     3481 cgtaaagccg accttgaaga cgttgtcgtt aagtgcgccg agaaactgcg tccagaagaa
     3541 cggcgcgaaa cgacgttcgc gcaacagccg gaactgaccg tcgccatgct gg
//
LOCUS       DATGBK010001202         1772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_222997, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001202 DATGBK010000000
VERSION     DATGBK010001202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222997"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..430)
                     /locus_tag="VKJ77_16775"
     CDS             complement(<1..430)
                     /locus_tag="VKJ77_16775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC46977.1"
                     /translation="MTPERFRRLTEAYGAMPEHWPAAERAEAKALLDQRDPAVLAALA
                     DARSLDLVLSRHSVAAPESDLVRRILASAPLTPPREEPVWKRPQWWLSGAGLVGVGVA
                     GIAAGVLAISLTGSFYITSANPPSLFDQTGESTVFSSTTAD"
     gene            complement(427..1002)
                     /locus_tag="VKJ77_16780"
     CDS             complement(427..1002)
                     /locus_tag="VKJ77_16780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007737581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HMC46978.1"
                     /translation="MNEEDPDAELLARIDGREPGAVREMVARKLPRLLALATRMLGDR
                     DEASDVAQEAFIRIWKQASRWQRGQARFDTWLHRVALNLCYDRLRRRQDVISDDDAPE
                     PVDQAPLPEDQLDESARSERIAAALAALPARQREALVLQYYQELPNVEAAALMGISVE
                     ALESLLSRARRTLRNRLAGERGEQVFGKERR"
     gene            complement(1247..1579)
                     /locus_tag="VKJ77_16785"
     CDS             complement(1247..1579)
                     /locus_tag="VKJ77_16785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YXWGXW repeat-containing protein"
                     /protein_id="HMC46979.1"
                     /translation="MKTLKKRASPTFAIKAVLAVVTALATLSSVSAFAQEVIIAPSAP
                     PPMRTEIVPAGRPGYVWDGGHWRWAGRGYEWVPGHWRPVRVGAHWVPGHWVQRGPNWR
                     WIEGHWAR"
BASE COUNT          314 a          571 c          560 g          327 t
ORIGIN      
        1 agtcggccgt cgtgctgctg aaaacggtgc tttcaccggt ttgatcgaag aggctcggcg
       61 ggttcgccga cgtgatgtag aaagatccgg tcaacgaaat ggccagcacg cccgcggcaa
      121 ttccagccac ccccaccccc acgagccccg cgcccgatag ccaccattgc ggccgtttcc
      181 atacgggttc ctcacgtggc ggcgtcaacg gtgcggatgc gaggatgcgc cggaccagat
      241 ccgattcggg cgcggcaacg ctgtgcctcg agagcacgag atcgagcgag cgggcgtcgg
      301 ccagcgcggc cagtacagcc gggtcccgtt ggtcgagaag cgctttggct tctgcgcgtt
      361 cggctgccgg ccagtgttcc ggcatggcgc cataagcctc ggtgaggcgg cgaaagcgtt
      421 cgggggtcat cggcgttcct ttccaaagac ttgctcgccg cgctcgccgg caagacggtt
      481 gcgcaacgtt cggcgggcgc gcgaaagcag gctttccagc gcttcgacgc tgatgcccat
      541 caaagccgct gcctcgacgt tcggcagttc ctggtagtac tgcaatacca gtgcttcgcg
      601 ctggcgtgcc ggcaacgcgg cgagcgcagc ggcaatgcgc tcgctgcgcg cggattcgtc
      661 gagttgatct tccggcagcg gcgcctggtc gacgggttcg ggggcgtcgt cgtcggagat
      721 gacatcctga cggcgccgca aacggtcata acacaggttg agcgccacgc ggtgcagcca
      781 ggtgtcaaag cgtgcctggc cgcgctgcca gcgcgacgcc tgcttccata tccgtatgaa
      841 tgcttcctgc gccacgtcgc tcgcttcgtc acggtctccc agcatccggg tcgcgagcgc
      901 gagcagccgc ggcagtttgc gcgcaaccat ctcgcgaacc gctccgggtt ccctgccatc
      961 gatacgggct agcaactccg cgtccgggtc ttcttcgttc aatgtggttg gtctcgcagc
     1021 acatgttcaa cagcctgcgc cgggttggtc tgcggcccgg cgcgccagcg tgggaaatgc
     1081 ttagtacacg acgaccgccg gccgataata agccggtcgc gccggataaa cgacacacgc
     1141 agaaagcgct gcggccgcaa atgcaatggc gactagagtt ctaagcatga ctgtctgcct
     1201 tttaccctgg aggtgacgga acgacagtga acgtaggcgg gccgattcag cgtgcccagt
     1261 gaccttcgat ccagcgccag ttcggtccgc gttgcaccca gtgccccggc acccaatgtg
     1321 cgccaaccct taccggccgc cagtggcccg gcacccattc atagccgcgg ccagcccagc
     1381 gccagtggcc accatcccac acataaccgg gacgccccgc gggaacgatt tccgtgcgca
     1441 tcggcggcgg tgccgacggg gcgatgatca cctcttgcgc gaatgccgac acgctggaca
     1501 gcgtggcgag ggcggtaacg acggccaaaa cggcctttat tgcgaacgtg ggcgaagccc
     1561 gtttttttag tgttttcata acggttccct ggagtagaaa agacgctcga tgcaggtgct
     1621 gtcgagtgct taaacgcggg ctccctggaa atccgtcgca cgatttcgat ttttttcacg
     1681 cggactgaaa cagggcgaga tgccgtgatg cgctcgccag taaaaaatgg ctacacgcgc
     1741 cgctttccct tatcccttgg cattcggttc cg
//
LOCUS       DATGBK010001203         2441 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_292316, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001203 DATGBK010000000
VERSION     DATGBK010001203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2441
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292316"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VKJ77_16790"
     CDS             complement(<1..305)
                     /locus_tag="VKJ77_16790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC46980.1"
                     /translation="MSETSANLSASEPPAILIVDDTPANLGLVVDSLSDQGFRVLVAL
                     DGEEALERAQFSRPDLILLDVKMPGIDGFETCRRLKMNEHTRDIPVIFMSSLTGIEDL
                     "
     gene            complement(302..2431)
                     /locus_tag="VKJ77_16795"
     CDS             complement(302..2431)
                     /locus_tag="VKJ77_16795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC46981.1"
                     /translation="MWSSLSRFRHSVVLRLLATVLLFSCVVTLLLTALQLYGDYERGI
                     TLIENRLSDIDRSYRDSISESLWRLDRQQLQLELDGMLRLADIRAAEVRETGSVASPL
                     VVQAGLRMNDAVISREFPISYRVHGTPRVLGTLYVEATLSGLYSELAQTALLILVSQA
                     ANTFLVALFIIYIFSRLVTRHLATIARLVGRYDFRESPQPFSLQRRQPRQPDELDRVV
                     AAFHAMGVRLHVAYLDERNAAKQREALRSAEAANRAKGEFLANMSHELRTPLNGILGY
                     AQILQRDSGLSERQHAGVAVIQRSGEHLLTLIDDTLDFARIEAGKLRLEIVDVALPGL
                     VDVIREIIGVKAEEKRLECVCAIAHDVPGGVRADARRLRQVLLNLLANAVKFTDRGKV
                     SLIVTQTIFGAVRFEVSDTGIGIPPDQLRTVFEPFEQVGNPERRSEGTGLGLAISREF
                     VLAMGSEIHVESGLGQGSTFWFELAPATTVRSGMSRESDARVATGYEGPRRKVLIIDD
                     VAVNRTVITELLSRLDFEIIEAASGAEGLAQAQSERPALIVTDIVMPGMDGLELTRRL
                     RQTPGLTDVPIIVVTASPSGRDQERSLAAGVSAFLAKPVDFGQLLAQIGALLNLQWTY
                     AVRAHSPQSSLPDVLAAVPPAQLDELHRLARIGNMRDIIAWADRVSLIDPQYEPFATN
                     LRGLAKGYQSKAILLLVEHYLEARRAP"
BASE COUNT          461 a          778 c          758 g          444 t
ORIGIN      
        1 agatcctcga tgccggtcag cgacgacatg aagatcaccg ggatatcccg tgtgtgctcg
       61 ttcatcttga gccggcggca agtttcaaag ccgtcgatgc caggcatctt cacgtcgagc
      121 aggatcagat ccggccgtga aaactgcgcg cgttcgagcg cctcctcgcc atcgagcgcc
      181 accaggacgc gaaagccctg gtcggagaga ctgtcaacca cgagcccgag attggccggc
      241 gtgtcatcga caatcaggat tgccggcggc tcgctggcgc tcaggttggc gcttgtctcg
      301 ctcatggcgc ccgcctcgct tcaagatagt gttctacgag caagaggatc gccttcgact
      361 gatagccttt cgccagccca cgcagatttg tagcaaatgg ttcgtactgc ggatcgatca
      421 atgacacccg gtccgcccac gcaatgatgt ctcgcatgtt gccaattcgc gcaagccgat
      481 gcagttcatc cagttgcgcc ggtggcacag cggccagcac atcgggcaat gaggactgcg
      541 gggaatgcgc cctcacggca taggtccact gaaggttcag caacgcgcct atctgagcca
      601 gcaactggcc gaagtcgacc ggcttggcga ggaatgcact cacaccggcc gcgagacttc
      661 tttcctggtc gcggccggaa gggctggcgg tcaccacgat gatcggcacg tcagtcagtc
      721 ccggtgtctg acgcaatcgg cgcgtgagct caaggccgtc catgccgggc atcacgatgt
      781 ccgtgacaat cagcgccggc cgctcgcttt gcgcctgggc caggccctcg gcgccgctcg
      841 ccgcctcgat gatttcaaaa tcgagccggc tcagcaattc cgtgatgacg gtgcgattga
      901 ccgccacgtc gtcgatgatc agcaccttcc tgcgcggccc ctcgtagccg gtcgcgacac
      961 gtgcgtccga ttcgcgggac atgcctgagc gcaccgtcgt ggcgggggcc agttcgaacc
     1021 agaaggtact gccttggccg agcccgctct cgacgtggat ctcgctgccc attgccagca
     1081 cgaactcccg gctgatggcg agcccgagcc cggtgccttc tgaacgacgc tcgggattgc
     1141 cgacctgttc gaacggctcg aagactgttc tcaactggtc tgggggaatg ccgatcccgg
     1201 tgtcgcttac ctcgaaccgt accgccccga aaatggtctg cgtgacaatc aggctcacct
     1261 tgccccgatc ggtgaattta acggcgttcg cgagcaggtt gagcagcacc tgccgcaacc
     1321 gccgcgcgtc ggcacgcacg ccgcccggca cgtcgtgcgc aatcgcgcag acacattcga
     1381 gccgtttctc ctccgccttc acgccgatga tttcacgaat cacatccacg agaccgggca
     1441 aggctacatc gacgatctca agccgcagct tgcccgcctc tatcctcgcg aagtcgagcg
     1501 tgtcgtcgat cagcgtcagc aggtgttcgc cgcttcgctg gatgacggcc acaccggcat
     1561 gttgccgttc gctcagcccg ctgtcgcgct gcaggatctg cgcgtaaccc aggatgccgt
     1621 tcagcggcgt gcgtagttca tggctcatat tggccaggaa ttctcccttg gcacggttcg
     1681 ccgcttcagc cgaacggagc gcctcgcgtt gcttggcggc gttacgttcg tcgaggtagg
     1741 caacgtgcag gcgtacaccc atcgcatgaa atgcggcgac cacgcgatcg agttcgtccg
     1801 gctggcgcgg ctggcggcgc tgcaggctga acggttgcgg cgactcgcga aagtcgtagc
     1861 gtccgacaag ccgtgcgatt gtcgcgaggt gtcgcgtaac gagccgcgag aaaatgtaaa
     1921 tgatgaaaag cgcaacgaga aacgtgttgg ccgcctggct caccaggatc aggagcgcgg
     1981 tctgcgccag ttcgctgtag agaccggaga gcgttgcctc gacgtacaag gtgccgagca
     2041 cgcgtggcgt gccgtggacg cggtacgaga tgggaaattc gcgcgatatg accgcgtcgt
     2101 tcatgcgcag gccagcctgc acgaccaggg gcgaggcgac cgagccagtc tcacggacct
     2161 cggcggcacg aatgtcggca agacggagca tgccgtccag ttcgagttga agctgctgcc
     2221 ggtcgagccg ccacagactc tcgctaatgc tgtcgcgata actcctgtcg atgtccgaca
     2281 gccggttttc gatgagcgtg atcccgcgct catagtcgcc gtagagttga agcgcggtca
     2341 gcagcagcgt aaccacgcaa ctgaacagga ggacggtcgc gagaagccgc aggaccacgc
     2401 tgtggcgaaa gcggctcagc gaactccaca gcgcgctgaa c
//
LOCUS       DATGBK010001204         2913 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245636, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001204 DATGBK010000000
VERSION     DATGBK010001204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2913
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245636"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..960)
                     /locus_tag="VKJ77_16800"
     CDS             complement(<1..960)
                     /locus_tag="VKJ77_16800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbiU family protein"
                     /protein_id="HMC46982.1"
                     /translation="MTALKIDDLPAAIRQAKRELREQLPNYREVFADVEQAIIAEAKL
                     ITEQRNRGEAVIPEIQFSDIAEQRVTATQVDLIKARGACVIRNVFDPALVESWDRDIA
                     NYVERNDLDTRLQNRAEDKYFGQLASSKPQIYGIYWSKPQVLARQSPSLTTARIFLNR
                     LWRSESEGRVHFDPEHVPAYADRLRRRPPASESLGLSAHCDGGSVERWIEANFRRVYR
                     HVFDGNWRQYDPFDAAFRPDVQEIASPAVCSMFRTFQGWTALTPQGPGDGTLQLVPIA
                     NSMVYILLRALQDDVADNDLCGAMPGRALSIKPEYHAPLFDALS"
     gene            1098..2066
                     /locus_tag="VKJ77_16805"
     CDS             1098..2066
                     /locus_tag="VKJ77_16805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008345370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC46983.1"
                     /translation="MKPAYEHVEFGGNCSVRVYHRRLPRIPFEWHHHPEYELTLTMNS
                     HGKRYIGDSVAAYGSDDLVLVPPDLPHTWASNRSIEPTSPQVAIVIWFDGEWARRLAD
                     CCPEYEPLRKLLRRAACGLAFAPEAGGAMRERIGELLSSAARERLAATLDILCTLADS
                     PGEPLASPSAFNDRDGGPSGHEPERINRVLSLIEARFAEPLRLSELCAAASLSERSLA
                     RYFAQHMGESVGQYMTRVRIGHACRMLSDTSLPVSVIAARSGFANVSNFNRQFKTVKE
                     TTPAAYRREFAEAGVPDDDDVARLTERSPSLQRKRERVGLEGDEPG"
     gene            complement(2253..>2913)
                     /locus_tag="VKJ77_16810"
     CDS             complement(2253..>2913)
                     /locus_tag="VKJ77_16810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012339645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HMC46984.1"
                     /translation="AGADPAARTPAGISAYRLATQVGLTEVVELLRAYGVAEDLSADD
                     DFVAACARADVIEARRIQTRHPDLPGSLPEDRLRLLPDAAAWGSSAAVKVMVELGWPI
                     SARGGDWDATALNHAVFRGDAELTAFLLSHGASWRETQGFGDDVLGTLSWASVNEPTG
                     PANPDWIGCARALMAHGLPKVERDPSSPERLLVEGRPKRFSEGVTEVLLEGGGTSAES
                     I"
BASE COUNT          553 a          895 c          891 g          574 t
ORIGIN      
        1 cgaaagcgca tcgaataagg gcgcgtgata ttccggcttg atcgacaacg ctcgtccggg
       61 catggcgccg cagaggtcgt tgtcggcaac gtcgtcctga agcgcacgca acaggatata
      121 caccattgag tttgcgatcg gcacgagttg cagtgtgccg tcgcccgggc cttgaggcgt
      181 gagcgcagtc cagccctgga acgtgcggaa catcgagcac actgccgggg atgcaatctc
      241 ttgaacgtcc ggcctgaacg cagcgtcgaa cggatcgtat tgacgccagt ttccatcgaa
      301 aacatgccgg tacaccctgc ggaaattagc ttctatccag cgttcgaccg agcctccatc
      361 gcaatgagca gagagaccga gtgactcgga cgccggtggt ctgcgacgca gacggtcggc
      421 ataggcagga acgtgttcag gatcgaaatg cacgcggcct tcgctctcgc tgcgccatag
      481 gcggttcagg aagatgcgtg cggttgtcag agagggcgac tgccgagcaa gcacctgcgg
      541 ttttgaccaa tagattccgt agatctgcgg cttgctggag gccaattgac caaagtattt
      601 atcttccgcg cggttttgca ggcgtgtgtc caggtcattg cgctcgacgt agttcgcaat
      661 gtcacggtcc cagctttcca ccagcgcggg gtcgaacaca ttgcgaatca cgcacgcgcc
      721 tcgtgccttg atgaggtcga cttgcgtagc cgtaacacgc tgttcggcaa tatcggaaaa
      781 ctgaatctcg gggatgacgg cttcgccgcg attgcgttgc tcagtaatga gctttgcctc
      841 agcgatgatc gcttgttcta cgtcggcgaa tacctctcga taattcggca attgctcgcg
      901 caactcccgt ttggcctggc gaatcgcggc ggggagatcg tcgattttca gtgcggtcat
      961 ggttgtctcc gtatgcgtgt tgatatgaac ggagcatagg ctgcgcacgt tcttcatggt
     1021 gatactatcc agacaactac tttgcttgtt cagccatgaa cccgcagcca tgaacccgca
     1081 gcaatgagcc cgcagccatg aagccagcat acgaacatgt cgagttcggc ggcaactgtt
     1141 ccgtccgggt ctaccaccgg cggcttcccc gcattccgtt cgagtggcat caccacccgg
     1201 aatacgaact gacgctgacg atgaacagtc acggaaagcg ctacattggc gattcagtgg
     1261 ctgcctacgg gtctgatgac ctcgtgctgg tcccgccgga ccttccgcat acttgggcgt
     1321 cgaatcgctc tatcgagccg acatcgccgc aggtggcgat cgtgatctgg ttcgacggcg
     1381 agtgggctcg gcggctagcg gattgttgcc cggaatatga accgctacgc aagctgctgc
     1441 gcagggcggc atgcggactg gcgttcgcac ccgaggcggg cggggcgatg cgcgagcgta
     1501 tcggcgaact gctatcgagc gcggcgcgcg aacgcctggc cgccacgctg gacatcctgt
     1561 gcacgcttgc cgactcgccg ggcgaaccgc ttgcgtcacc cagcgctttc aacgaccgtg
     1621 acggcggacc ttcgggccat gagcccgaac gcatcaaccg ggtgctctcg ctgatcgaag
     1681 cacgtttcgc cgaacctttg cgtttatcag aactttgtgc ggctgcgagc ctgtcggagc
     1741 gttcgctcgc gcgttacttc gctcaacaca tgggcgaaag cgtcggccag tacatgacgc
     1801 gcgtgaggat cggccatgcc tgccggatgc tgagcgacac atcattgcct gtctccgtca
     1861 ttgcggcacg gtctggattt gcgaatgttt ccaacttcaa ccggcagttc aagacggtga
     1921 aggaaacgac gcccgcggct tatcgccggg agtttgccga ggccggcgtt cctgatgacg
     1981 acgatgtcgc ccggctgact gaacgctcgc catcgcttca aagaaaacgg gaacgggttg
     2041 gtctggaggg tgatgagccc ggctagtttg cgcggccagg acatgggtga ttcggcgctc
     2101 tgccaggggg ctggcgacgg ggaaaaccac ctatgcttcg ccatttctct tcggccggca
     2161 ttggctgcgg tcaaccccgt cgtcccgtgc gccgctttgg tgtgagccga cattcaaaac
     2221 cattgcggag gcggacatag caatgacaca gatcagatcg attcagcgct cgtgcctccc
     2281 ccttccagca agacctccgt cactccctcg gaaaaccgtt tgggccggcc ttcgacgagc
     2341 agccgttccg ggcttgacgg atcccgctct accttgggaa gtccgtgagc catgagcgcg
     2401 cgggcacaac cgatccagtc ggggttcgcg ggccctgtcg gctcgttgac agaggcccag
     2461 gacagcgtgc cgagcacatc atctccgaag ccttgcgtct cacgccagct agctccgtga
     2521 gagagcagaa aggccgtcag ctccgcgtcg ccacgaaaga cagcgtggtt tagcgctgtc
     2581 gcgtcccaat ctcctccacg cgcggagata ggccagccaa gttcgaccat gaccttgacc
     2641 gcagcgctgg atccccacgc tgcggcgtcg gggagtagcc ttagccggtc ctccggcagc
     2701 gaacctggca ggtcagggtg tcgtgtctga atgcggcgcg cctcgatcac gtcagctcgg
     2761 gcacacgccg ccacgaaatc atcgtccgcg cttagatcct ccgccacccc gtaggcgcgc
     2821 aagagctcca cgacctccgt tagaccgacc tgcgtcgcca gccgataagc actgatgccg
     2881 gcaggcgtcc gcgccgcagg atcggcaccg gcc
//
LOCUS       DATGBK010001205         1618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_129865, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001205 DATGBK010000000
VERSION     DATGBK010001205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129865"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VKJ77_16815"
     CDS             complement(<1..319)
                     /locus_tag="VKJ77_16815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HMC46985.1"
                     /translation="MKVLLIGAHGRTGRHIARQLRAASLPFKVLLRKSAHRGEFAALG
                     AEIVLGDLTNDFSHAFDDVTHVIYAAGSAENEGVNEERAIDRDAVQRTADYAKRRRTK
                     QLVV"
     gene            complement(453..>1618)
                     /locus_tag="VKJ77_16820"
     CDS             complement(453..>1618)
                     /locus_tag="VKJ77_16820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46986.1"
                     /translation="SARLGIQPAQIDNTLYDAFGQRQVSTIYNELSQYHVVMEVAPKY
                     WQDPEMLKQIYVSTSGGTASGAASTNATTTTSTSTLTSSSASASSTGTTSSLALASIR
                     NAATNAIAASGKSSSSAGAAVSTSQETMIPLSAIAKFGPGNTPLSVNHQSQFVASTIS
                     FNLPPGKSLSDATAAIYETMATIGVPSTIHGSFAGTAQQFQDSTKDQPILILAALAAV
                     YIVLGILYESYIHPITILSTLPSAGIGALLALLLFRTEFSIIALIGVILLIGIVKKNA
                     IMMVDFAIQAQRHGAATSREAIEQACLLRFRPIMMTTAAALLGALPLAFGTGEGSEMR
                     APLGIAIVGGLIVSQLLTLYTTPVVYLYMDRIRIWSEERRARRGQTGPARVIE"
BASE COUNT          313 a          501 c          483 g          321 t
ORIGIN      
        1 tgaccaccag ttgtttggtc cggcggcgtt ttgcgtagtc ggcggtgcgt tggacagcgt
       61 cgcgatcgat tgcacgttcc tcgttcacgc cttcgttttc cgccgatcct gcggcataga
      121 ttacgtgcgt gacgtcgtcg aaggcgtggg aaaaatcgtt ggtcagatcg ccgagcacga
      181 tttcggcgcc gagtgcggcg aactcaccgc ggtgcgcgga tttgcgcagc aagactttga
      241 aggggaggga tgcggcgcgt agttgccggg caatgtggcg gccggtccgg ccgtgtgcgc
      301 cgatgagcag gactttcatt gctttttcgc tccttctgat tgtgggcagg agctaaaacg
      361 ttaagccttt tttgggattc atgcacgggg gtagtcacct accgccggct caaatctact
      421 cacaccaccc attccctcgc gggcaaaaac ggtcactcga tgacccgagc cggccctgtc
      481 tgacccctgc gcgcgcgccg ctcctccgac caaatccgga tccggtccat ataaagataa
      541 accaccggcg ttgtgtaaag cgtcagcaac tgactcacga tcaacccgcc cacgatcgcg
      601 attcccagcg gtgcgcgcat ctccgatccc tcgccagtcc cgaacgccaa cggcaacgca
      661 cccaacaacg ccgcagccgt cgtcatcatg atcggccgga aacgaagcaa acacgcctgc
      721 tcaatcgcct cgcgcgacgt cgcagcacca tgccgctgcg cctgtatcgc aaagtcgacc
      781 atcatgatcg cgttcttctt cacaatgccg atcagcaaga tcaccccgat caacgcgatg
      841 atgctgaact cggtcctgaa cagcagcagc gcaagcaacg caccaatccc cgccgagggt
      901 aatgtcgaga gaatcgtgat gggatggatg taactctcgt acaagatccc caggacgata
      961 tacaccgcag ccagcgcggc caggatcagg atcggctggt ctttagttga atcctggaac
     1021 tgctgcgcag tgcccgcgaa actgccgtga atcgtgctgg gcacgccaat ggtcgccatg
     1081 gtttcgtaga tggcagcggt ggcgtcggag agcgacttgc cgggcggcag gttgaacgag
     1141 atcgtcgacg ccacgaactg gctctggtga ttcactgata acggcgtgtt gcccggcccg
     1201 aacttggcaa tggccgacag cgggatcatg gtctcctgcg acgtcgacac agccgcgccc
     1261 gccgacgaac tggacttccc actcgcagca atggcgttgg tcgcggcatt gcggatggat
     1321 gccagcgcca gcgaactggt cgtgccggtg gacgaagcgc tagcgcttga actcgtcaac
     1381 gtggacgtgg aagtcgtcgt ggtcgcgttc gtcgatgccg caccgctcgc ggtccccccc
     1441 gacgtgctca catagatctg cttgagcatc tccgggtctt gccagtattt cggcgcgact
     1501 tccatcacca cgtggtactg gctcaactcg ttgtagatgg tcgatacctg gcgctggccg
     1561 aatgcgtcgt agagcgtatt gtcgatctgc gccggctgga tgcccaggcg cgcggacg
//
LOCUS       DATGBK010001206         1775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_129872, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001206 DATGBK010000000
VERSION     DATGBK010001206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129872"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..544
                     /gene="rplP"
                     /locus_tag="VKJ77_16825"
     CDS             119..544
                     /gene="rplP"
                     /locus_tag="VKJ77_16825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018574441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HMC46987.1"
                     /translation="MLTPKRVKWRKQHRGRMTGKALVGNTLTFGEFGLQASEPCWMTN
                     RQIEAARIAMTRHIKRGGKVWIKVFPDKSVTKKPAEVRMGSGKGNPEGWVAVIRPGRI
                     LFEIAGVPESVAKEALRLAAQKLPIGVKFVTRAIEEAVV"
     gene            541..762
                     /gene="rpmC"
                     /locus_tag="VKJ77_16830"
     CDS             541..762
                     /gene="rpmC"
                     /locus_tag="VKJ77_16830"
                     /inference="COORDINATES: protein motif:HMM:TIGR00012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HMC46988.1"
                     /translation="MKKTDLRALRDLSIAELETKAKETKEELFNLRFSLRTGHLSDFS
                     KVKAARRAYAQIQTAISEKKIVEARHGAA"
     gene            776..1033
                     /gene="rpsQ"
                     /locus_tag="VKJ77_16835"
     CDS             776..1033
                     /gene="rpsQ"
                     /locus_tag="VKJ77_16835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016660790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HMC46989.1"
                     /translation="MEPRNRRRIKQGRVASNKMDKTIVVVTETRVPHPVYKKIVRKSV
                     RFKAHDELNAAGIGDTVRIAECRPMSKDKRWRLVEIVEKAK"
     gene            1035..1412
                     /gene="rplN"
                     /locus_tag="VKJ77_16840"
     CDS             1035..1412
                     /gene="rplN"
                     /locus_tag="VKJ77_16840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HMC46990.1"
                     /translation="MIQQETRLKVADNSGARELLCIHVSGGSRHKYAFVGDIIVGTVK
                     SAIPGAAVKKGQVVKAVVVRCSHPMRRPDGSIIKFDDNACVIIKGEKENLDPRGTRVF
                     GPVCRELRDRGFLKIASLAPEVL"
     gene            1412..1765
                     /gene="rplX"
                     /locus_tag="VKJ77_16845"
     CDS             1412..1765
                     /gene="rplX"
                     /locus_tag="VKJ77_16845"
                     /inference="COORDINATES: protein motif:HMM:TIGR01079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HMC46991.1"
                     /translation="MGTAVAKPHIAKGDTVMIRRGKEKGKRGIVKAVFPKEGNATVEG
                     LNVIKRHTKPGQAGNQQSGGIFEKEAPLPLSVLQVIDPKTNLPTRIRRSVTSDGTRIR
                     VSVRSGEQLAIPVKG"
BASE COUNT          429 a          523 c          507 g          316 t
ORIGIN      
        1 tgaaccgcaa gcgcacgttg ccgaaccgca cgcgcccgta gccgaagctc cgcaagcgca
       61 agccgacgcg gctcccgaga cttcaaccac accaactccc gaggctggac agtaagacat
      121 gctgactccg aagcgcgtca aatggcgcaa acaacatcgc ggacgtatga ccggtaaagc
      181 gctcgtcggc aacacgctga cgttcggtga attcggtctg caagccagcg aaccgtgctg
      241 gatgaccaac cgccaaatcg aagcggcacg tattgccatg acccgtcaca tcaaacgtgg
      301 cggtaaagtg tggatcaaag tgttccccga taaatcggtc accaagaagc cggccgaagt
      361 ccgcatgggt tccggtaagg gaaatcccga gggctgggtc gccgtgattc gtccgggtcg
      421 cattctgttc gagatcgccg gcgtgccgga atcggtcgcg aaagaagcgc ttcgtttggc
      481 cgcacaaaaa ctgcctatcg gcgtgaaatt cgtgacgcgt gcgatcgagg aggctgtcgt
      541 atgaaaaaga cggacttgcg cgcactgcgc gatctgagca tcgctgagct cgagaccaaa
      601 gccaaagaaa ccaaagaaga actctttaac ttgcgctttt cgctgcgtac cggccatctt
      661 tcggatttct cgaaagtgaa agccgcccgc cgtgcatacg cgcaaatcca aacagcgatt
      721 tccgagaaga agatcgtcga ggcacgtcat ggagcagcct aataccgcag cggcaatcga
      781 gccgcgcaac cgccgccgta tcaagcaagg ccgcgttgcc tcgaacaaga tggataaaac
      841 gatcgtcgtc gttacggaga cgcgcgttcc ccatccggtg tacaaaaaaa tcgtccgcaa
      901 gtccgtgcgc ttcaaggccc acgacgagct taacgccgcc ggtatcggcg acacggttcg
      961 cattgcggaa tgccgtccta tgtccaaaga caagcgctgg cgcttagtcg aaatcgtcga
     1021 gaaagccaag taacgtgatt caacaagaaa cgcgattaaa agtcgcggac aactccggag
     1081 cgcgcgaact gctctgcatc cacgtcagtg gcggcagccg gcacaagtat gcctttgtcg
     1141 gcgatatcat cgtcggcacc gtgaagtccg cgatccccgg tgctgctgtg aaaaagggtc
     1201 aggtcgtgaa agcggtcgtg gtccgttgct cgcacccgat gcgccggccc gacggttcga
     1261 tcatcaagtt cgacgacaat gcgtgcgtca tcatcaaggg cgagaaagaa aacctggatc
     1321 cgcgcggcac gcgcgtgttc gggcctgttt gccgcgaact gcgcgaccgc ggtttcttga
     1381 agatcgcttc attggctccg gaggtgctct aatgggtacc gctgttgcaa aaccgcacat
     1441 cgctaaaggc gataccgtga tgattcgtcg cggcaaagaa aaaggcaagc gcggcatcgt
     1501 gaaagcggtc ttccctaaag aaggcaatgc gaccgtcgaa ggcctcaacg tgatcaagcg
     1561 tcacacgaag cccggccaag ccggcaatca gcagtccggc ggcatcttcg aaaaagaagc
     1621 gccgttaccg ctgtctgtcc ttcaagttat cgatccgaag acgaatcttc cgacgcgcat
     1681 tcggcgctcc gtcacgtccg atggcacacg cattcgcgtg tccgtccggt ctggcgaaca
     1741 gcttgcgatt ccggtcaaag ggtagcccgc acaat
//
LOCUS       DATGBK010001207         2550 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245662, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001207 DATGBK010000000
VERSION     DATGBK010001207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245662"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..403)
                     /locus_tag="VKJ77_16850"
     CDS             complement(<1..403)
                     /locus_tag="VKJ77_16850"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490740.1"
                     /note="catalyzes the interconversion of D-xylose to
                     D-xylulose; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HMC46992.1"
                     /translation="MSYFEHLPAVRYEGPESDNPFAYRHYDRDKLVLGKRMEDHLRLA
                     VCYWHTFVWPGVDMFGQGTFHRPWQQPGDAIERAHVKADSAFEFFSKLGAPYYTFHDT
                     DVSPEGDSIKHYVNNFKGVTDYLAAKQEETGI"
     gene            650..1858
                     /locus_tag="VKJ77_16855"
     CDS             650..1858
                     /locus_tag="VKJ77_16855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010092346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HMC46993.1"
                     /translation="MTRPQTAQASHRIALMFNANKVYDRGVITGIGNYLLSTRVAWDL
                     FLEEDFRCRLNGIERFEGDGIIADFDDPAVAEALGDSQLPVVAVGSSYSDPACYPARL
                     PYIATDNAKLISLAYTHLIGAGLQRFALYSLPESPENRWAQERELAFKALLAADGLEA
                     DIHRGLPTSAPVWSQASAQLTSWLESLPKPVGVIAVTDARARHLLQACLISGIPVPEQ
                     VAIIGIDNDPLTRSLTRIPLSSVIQGTEEMGRTAAHLLHQMLGGARFHGRRILVPPVG
                     INVLESTRHQPVSSPYVMRARHYIRQYGCQGIKTEQVADYVGVSRSSLEDHFRRELGY
                     TVHQEILNHKLDVAKQLLARHDLSSAEVAIRCGFTSLQYMYAVFRRELDCTPREYQER
                     LPVAPCEQPG"
     gene            1871..>2550
                     /locus_tag="VKJ77_16860"
     CDS             1871..>2550
                     /locus_tag="VKJ77_16860"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007589110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HMC46994.1"
                     /translation="MNLADIFADMPTPLRPGSARVSVERWGELPGGDSARLFTLRNVH
                     GMRVAISDLGATLVSWNTADRAGRVADVLLGHDTPAEYFAGHAYLGGVIGRWANRIEN
                     ARFALDNIAYSLDRNEGDNLLHGGTAGFHRALWDAQEVDGGLVLTHESPEGDAGFPGN
                     VSTTLRYTLDDDGTLTLAYEAVSDAPTPLNLTNHACFNLSGDETADIRGHVISIDADT
                     FFEVDAAL"
BASE COUNT          504 a          805 c          740 g          501 t
ORIGIN      
        1 tgatgccggt ttcctcctgc ttggcagcca gatagtccgt gacaccttta aagttgttga
       61 cgtagtgctt gatgctgtcg ccctcgggcg atacgtcggt gtcgtggaag gtgtaatacg
      121 gcgcgcccag cttcgagaag aattcgaacg ccgagtcggc tttcacgtga gcgcgttcta
      181 ttgcgtcgcc cggttgctgc cacggccggt gaaaagtgcc ctgcccgaac atgtccacgc
      241 cgggccagac gaacgtatgc cagtaacaga cggcgaggcg caagtgatcc tccatgcgct
      301 tgccgaggac cagcttgtcg cgatcgtagt gacgataggc aaaaggattg tcggactcag
      361 ggccttcata acgcacggcc ggcaaatgtt caaaatacga catggcgtct ccttcttttt
      421 aatgtgacac catgctgcca gcatcgttgc gcaacgagca attgcgaaat ccgccagtgc
      481 tcatggtgtt tcttcagcta agtcataatc aagctggcgg cttcccggtg tgcgggccta
      541 gaatcagcaa acgctaaaaa gactcgcatt aaaaaaacag gcgcatattg cgctgcaacg
      601 gagacgatgg gcatatcgcg gccagcggca tgcacccgtc cggagttcca tgacacgacc
      661 acagaccgct caggcctcac accggatcgc gctcatgttc aacgcgaaca aggtgtatga
      721 ccgcggagtc attaccggca tcggcaacta tttgctgtcc acgcgcgtcg catgggatct
      781 cttcctggag gaggattttc gctgccggct gaacggtatc gaacgcttcg aaggcgacgg
      841 catcatcgcg gatttcgacg atccggcagt ggccgaagca ctgggagatt cgcaactgcc
      901 tgtggtcgcg gtgggttctt cttattcgga cccggcatgt tatcccgcca ggctgcccta
      961 tatcgcgacc gacaacgcga agctgatctc gcttgcgtac acgcatctga tcggtgcggg
     1021 cttgcagcgc tttgcgcttt acagcctgcc tgaatcgccc gaaaaccgct gggcgcaaga
     1081 acgtgaactg gccttcaagg cactgctcgc cgccgatggg ctcgaagcag acatccatcg
     1141 cggcctgccg accagtgccc ccgtctggag ccaggcaagc gcgcaactga cctcgtggct
     1201 cgagagtttg ccgaagcctg tcggcgtgat cgccgtgacc gatgcccgcg cgcggcacct
     1261 tctgcaggcg tgcctcatct cgggtattcc cgtacccgag caagtggcca tcattggcat
     1321 agacaacgat ccgctgacac gctcgctcac ccgcattccg ctgtcttccg tcattcaggg
     1381 gaccgaggaa atgggccgaa cagctgccca tctgctgcac cagatgctgg ggggcgcacg
     1441 ctttcatggc aggcgaatcc ttgtgccgcc agtcggcatc aacgtactcg aatcaacacg
     1501 tcatcaaccg gtgtcgagcc cctatgtcat gcgtgcacgc cactacatcc ggcaatacgg
     1561 atgtcagggc atcaagaccg aacaagtggc cgattacgtg ggtgtatcgc gctcgtcact
     1621 ggaggatcac ttccgccgcg aactcggcta caccgtgcac caggagatac tgaatcacaa
     1681 actcgatgtc gcgaagcaac tcctcgcacg tcacgattta tccagcgccg aagtcgccat
     1741 ccgctgcggc ttcacttcgc tgcaatacat gtacgccgtg ttccgtcgcg agctggactg
     1801 tacgccgcgc gaatatcagg agcgcctgcc ggttgcgccc tgcgagcaac ccggctgatc
     1861 cccgcccgcc atgaatctcg ccgatatttt cgccgatatg cccactcctc tccgcccagg
     1921 ctccgcgcgc gtcagtgtcg aacgctgggg agagttgccc ggcggcgact cggcgcgcct
     1981 gttcacgctg cgcaatgtgc acggcatgcg cgtcgcaatc agcgatctcg gtgcgacgct
     2041 ggtctcgtgg aataccgccg atcgtgcggg acgcgtggca gatgtcctgc tgggtcacga
     2101 cacgcccgct gaatatttcg ccggccatgc ttatctgggc ggtgtgatcg gacgctgggc
     2161 aaaccggatc gagaacgcgc gcttcgcact cgacaatatc gcgtattcgc tcgaccgcaa
     2221 cgagggtgac aacttgctgc atggcggcac ggcaggcttt catcgcgcgc tatgggacgc
     2281 gcaagaggtg gacggcgggc tggtcctcac gcatgaatcg ccggagggcg acgcgggctt
     2341 ccccggcaat gtatcgacca cgttacgcta cacgctcgac gatgacggca cgctgacgct
     2401 cgcgtatgaa gccgtgtcgg atgcgccaac gccgctcaac ctgacgaacc acgcctgctt
     2461 caacctgtcg ggcgacgaaa ccgccgatat ccgcggccac gtcatctcca tcgacgccga
     2521 cacgttcttc gaagtcgacg ccgccctgat
//
LOCUS       DATGBK010001208         2244 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176377, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001208 DATGBK010000000
VERSION     DATGBK010001208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176377"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..602
                     /locus_tag="VKJ77_16865"
     CDS             <1..602
                     /locus_tag="VKJ77_16865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006161096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC46995.1"
                     /translation="ALAVIFIYMILASQFGSFLQPLAIMTSLPLTLVGVLLALLLFGS
                     TLNMFSIIGFIMLMGLVTKNAILLVDFANQARRGTLLDATGTGHPMTRTDALLEAARV
                     RLRPILMTTLAMIFGMLPLALGLGEGGEQRGPLGQTVIGGVITSSLLTLVVVPVAYTV
                     LDDFGAWVTRKWRRGAKERTLVAPPQRSRDIPAEVDRVP"
     gene            complement(697..1164)
                     /locus_tag="VKJ77_16870"
     CDS             complement(697..1164)
                     /locus_tag="VKJ77_16870"
                     /inference="COORDINATES: protein motif:HMM:NF021873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2442 domain-containing protein"
                     /protein_id="HMC46996.1"
                     /translation="MTAFVDITEHQMREAEERMSKHVAEHPVAVSASFNPVDGRVAIE
                     LSNGALFAIPARIIQGLENASDSDLKTIEITASGTGLYFPIVDADILVAPLLAGVLGS
                     RSFMARRLGKEGGASCSESKAAAARANGARGGRPRKVTVESEEREDGAALAKK"
     gene            complement(1148..1399)
                     /locus_tag="VKJ77_16875"
     CDS             complement(1148..1399)
                     /locus_tag="VKJ77_16875"
                     /inference="COORDINATES: protein motif:HMM:NF025088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4160 domain-containing protein"
                     /protein_id="HMC46997.1"
                     /translation="MPTIFRIGAARVVIYLNDHQPAHVHVLDGKQHAIFNLHCPAGPP
                     TLQKNHGFSLVDANTFARRMQNVVGSLCTEWKTLHDCFC"
     gene            1782..>2244
                     /locus_tag="VKJ77_16880"
     CDS             1782..>2244
                     /locus_tag="VKJ77_16880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HMC46998.1"
                     /translation="MPITSPQFAPLAQLAAALRDGKTTSRELVEQALARIADPSGQGA
                     VSFLHVDSERARAAADAHDALRRAGTVLSPLAGIPVSIKDLFDIEGQVTRAGSRVLAD
                     ALPAKADAIAVARLRRAGGVIVGRTNMSEFAFSGLGLNPHYGTPHSPYRSDV"
BASE COUNT          418 a          702 c          661 g          463 t
ORIGIN      
        1 tggcgctcgc cgtgatcttc atctacatga tcctcgcgtc acagttcggc agcttcctgc
       61 aaccgctcgc gatcatgacg tccttaccgt tgacgctcgt gggcgtgctg ctcgcattgc
      121 tgctgttcgg cagcacgctc aacatgttct cgatcatcgg cttcatcatg ctgatgggcc
      181 ttgtcacgaa gaacgcaatc ctgctcgtcg acttcgcgaa ccaggcacgg cgcggcaccc
      241 tgctcgacgc gacgggcaca ggccacccga tgacccgcac cgacgcgttg ctggaagcag
      301 cacgcgtcag gctgcgcccg atcctgatga ccacgctcgc gatgatcttc ggcatgctgc
      361 cgctcgcgct gggtctgggc gaaggtggag agcaacgggg gccgctcggc cagacggtca
      421 ttggcggcgt gatcacctcg tctttgttga cgctggtagt cgtgcccgtg gcttatacgg
      481 tccttgatga tttcggcgca tgggtgacga gaaaatggcg gcgcggcgca aaggaaagga
      541 cgctcgttgc acctccccaa cgttctcgcg atattcccgc cgaggtggac cgagtgcctt
      601 gacgcgattg caggccgcgt aaactcgctt tacgcgcgcg gttgggttcg aagttgcgct
      661 cgaagttgcg ctcgaagttg cactattaac cgcaggctat ttcttcgcga gcgcggcacc
      721 atcctcacgc tcctcgcttt ccaccgtgac ctttcggggc cggccaccac gcgcgccgtt
      781 cgcgcgggcc gcggccgcct tggattcact gcagctggcc ccgccctcct tgcctagccg
      841 cctggccatg aacgatcgcg accccagcac accggcaagt aacggcgcca cgagaatgtc
      901 ggcgtcgaca atggggaaat acagacccgt gccggacgct gtgatttcga tcgttttcag
      961 gtcgctgtcc gaagcatttt ccaaaccctg aataatccgc gcgggaattg cgaacaacgc
     1021 gccattcgac agttcgatag ccaccctgcc gtccaccgga ttaaacgagg cggacacggc
     1081 gaccggatgt tcagcaacgt gcttgctcat ccgctcttcg gcttcgcgca tctggtgttc
     1141 ggtgatatca acaaaagcag tcatgaagtg ttttccattc agtgcacagc gagccgacta
     1201 cgttttgcat gcggcgagcg aaggtatttg catcaacgag cgaaaagccg tgattctttt
     1261 gcaaggtcgg cggtccagca ggacagtgca ggttgaagat ggcgtgttgc ttgccatcaa
     1321 ggacatgcac gtgagcaggt tgatggtcgt ttaaataaat cacgacgcgg gcagcgccga
     1381 tgcggaaaat cgttggcatg tagtcactct atccgttagc tgcgcacaag taaacccaaa
     1441 cgcttgggtt tttacaaggc tgttgttttc caccgcagaa gaccgtctgc agggatcagc
     1501 caagcttagg caggaagcag taacggcgct atcagccgaa tggccgagga gcccggttta
     1561 tcaagcgcca cgcgctccgc gtcgagtatt tattactgag ctggcttaga atgacagcca
     1621 cttttgggca agttagatca ggcgtttcat tgcggctttc ggcatggcaa tgccgcaacg
     1681 ccacggtgcg aacggatcac tcgcgccgca ttcgcgctcc gtgtagcacg ctagtccttg
     1741 cccgttttgc agctcgccaa gccaccggtt tcttcgacac catgcccatc acctcgcctc
     1801 agttcgcgcc tctcgcacaa ctcgccgccg cgcttcgtga cggtaaaacc accagccgcg
     1861 agctggtgga gcaggcactc gcacgcattg cagacccttc ggggcaggga gcggtttcct
     1921 tcctgcacgt cgattcagag cgcgcccgcg ccgccgccga cgcgcacgac gcattgcgcc
     1981 gtgcgggtac agtcctctcg ccgcttgctg gcattcctgt gtcgatcaag gatctcttcg
     2041 atatcgaagg ccaagtgaca cgcgccggct cgcgtgtact ggccgacgcg ctgccagcca
     2101 aggccgacgc tatcgccgtt gccaggctgc ggcgggcggg cggcgtgatt gtcgggcgaa
     2161 ccaacatgag cgaattcgcg ttctccgggc tcgggctgaa cccgcactac ggaacgccgc
     2221 actcgccgta tcgaagcgat gtgg
//
LOCUS       DATGBK010001209         1614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_107041, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001209 DATGBK010000000
VERSION     DATGBK010001209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107041"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..704)
                     /locus_tag="VKJ77_16885"
     CDS             complement(<1..704)
                     /locus_tag="VKJ77_16885"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HMC46999.1"
                     /translation="MNGIELTERLRAGLPVYALGIRASRTTDVVRWAKATGYDTIWID
                     MEHSTLPVDTVAQLCSCAVDLGLTPWVRVPERDYGTINRVLDGGALGIIVARVETAAQ
                     ARDVVTATRFPPLGQRSQLATLPYVNFEKLHARELNQTLNDATAIKVLIESRAGVEAA
                     DAIAAVDGVDILAVGCNDLSADLGHTGESTHPEVVEACRSVIAAARRCGKVAIVGGMP
                     DSDALTSLRNEGAAPF"
     gene            803..>1614
                     /locus_tag="VKJ77_16890"
     CDS             803..>1614
                     /locus_tag="VKJ77_16890"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47000.1"
                     /translation="MHVRHLEYFVVLAEELHFRRSAERLGITQAPLSLAIQALETELG
                     ARLFHRTSRSVALTEAGFSLMNDAKHILARIDLAKENVWQTVSGQVGRLRLGFTNASS
                     LSPLFPRLIHAYRTQRPNVQIGLHELSSSQQIEQLDARELDVGLLRLPLATPPANLVF
                     TPLLQEPLLLAMHAGHPLAKAASIKIADLRNEPFIAYPRQAGVAVYEQTVALCAKRGF
                     EPYVVQEAQQASTLIGLTATGLGIALVPATLKAIAIPGVVFRELDDDDTRTTL"
BASE COUNT          299 a          503 c          467 g          345 t
ORIGIN      
        1 atgaagggcg cggccccttc gttcctgagg ctcgtcaatg cgtcgctatc cggcatgcct
       61 ccgacgatcg cgaccttgcc gcaacgccgg gcggcagcaa tcacactgcg gcacgcttcc
      121 actacctccg gatgcgtcga ctcgccggtg tgtcccagat cggcgctcaa gtcgttgcag
      181 cccactgcca gtatgtccac accgtcgacg gctgcaattg catcagccgc ttccacacct
      241 gcgcggctct cgatcaatac cttgatcgcg gtggcgtcat tgagcgtttg attgagttcg
      301 cgggcgtgca gtttttcgaa gttcacatag ggcagcgtcg cgagttgcga gcgctgcccg
      361 agcggcggga agcgcgttgc cgtgaccacg tctctcgctt gcgccgccgt ttccacccgc
      421 gcgacgatga taccgagtgc cccaccgtcg agcacgcgat tgatcgttcc gtagtcacgc
      481 tcaggaaccc ggacccacgg cgtcaaaccg agatcgaccg cgcatgagca caactgcgcg
      541 accgtatcga cgggcagcgt gctgtgctcc atgtcgatcc atatggtgtc gtagccggtc
      601 gctttagccc agcgaaccac gtcggtggtt cgtgacgcac ggataccgag cgcgtagacg
      661 ggaaggcctg cccgcaagcg ctcagtcaat tcgataccgt tcatgttgtc tccttctgtt
      721 atttggcttc ggaacaagta tcgcctcaga atccattctg atttattctt cagaaaatct
      781 tattgattca cagagacaat caatgcacgt caggcatctg gagtatttcg tcgtgctcgc
      841 cgaggaattg catttccggc gcagcgctga acggctaggt attacgcaag cccccttgag
      901 cctggcgatc caggcgctcg aaaccgaact tggcgcgcgc ctctttcatc ggacgagtcg
      961 ctcggtggca ttgactgagg ccgggttttc cctgatgaac gatgcgaagc acatcctcgc
     1021 gcgcatcgac ctcgctaagg aaaatgtctg gcaaacggtt agcggacagg tcgggcgttt
     1081 gcggttaggt tttacgaatg cgtcatcgct atcgcccctt tttccgcggt tgatccacgc
     1141 gtatcgtacg cagcggccga acgtgcagat cggcctgcat gagttgtctt cgtcgcaaca
     1201 gattgaacag ctcgacgccc gcgaactcga tgtcggactc ctgcgcttgc cgctcgctac
     1261 gccgccggcg aatctggtgt ttacgccctt gctccaagag ccgctgctgc tcgcgatgca
     1321 tgcgggccat ccgcttgcca aggccgcgtc catcaagatc gcagacttgc gcaacgagcc
     1381 gtttattgcc tatccacggc aagcgggtgt cgccgtatac gagcaaacgg tcgcgttatg
     1441 cgcgaagcgc ggcttcgagc cttatgttgt tcaggaagca cagcaggcgt ccacgctgat
     1501 cggtctgacc gcaaccggcc tggggatcgc gctagtgccg gccacgctga aggccattgc
     1561 cataccgggt gtcgtgttca gggaactcga cgacgacgat accaggacga cgct
//
LOCUS       DATGBK010001210         1861 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_61242, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001210 DATGBK010000000
VERSION     DATGBK010001210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61242"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(119..745)
                     /gene="pncA"
                     /locus_tag="VKJ77_16895"
     CDS             complement(119..745)
                     /gene="pncA"
                     /locus_tag="VKJ77_16895"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HMC47001.1"
                     /translation="MKGADEVLLVVDIQNDFMPRGALAVAHGDEVVPVINRLARAFSH
                     VVLTQDRHPAKHISFAENHAGRAPFDMTTLSYGQQVLWPTHCVQNTDGAALHRDLDVP
                     HARLVIRKGHHVDVDSYSAFMEADRITPTGLTGYLRDVGAKRVYCCGLATDYCVAWSA
                     LDARGAGFEVVVIDDACRAIDLDGSLARAWEQMTAAGVSRIGSTDLLR"
     gene            complement(780..>1861)
                     /locus_tag="VKJ77_16900"
     CDS             complement(780..>1861)
                     /locus_tag="VKJ77_16900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HMC47002.1"
                     /translation="IRKNYESAVKKGRLTAEKLEERMALITPTLAYEDLKDADLIIEA
                     VFEELGVKEQVFSKLDQVAKKGAILASNTSTLDVDKIAAFTKRPEDVVGMHFFSPANV
                     MKLLEVVRGAKTSKDVLATVMQLAKKIKKTAVVSGVCDGFIGNRMIEQYLRQALFMLE
                     EGALPAQVDRAIEKFGFAMGPFRMSDLAGNDIGWAIRKRRYQEKPDLKYSKIADRLCD
                     TGRFGQKTGAGWYDYKAGDRTAHPSKIVDEMIVAYSKEQGVTRRKISDDEIVERLVFA
                     LVNEGALILEEGIASKASDIDMVYLTGYGFPLYRGRPMLYADTVGLYNVERAMRKYGA
                     QANGEAWKPAVRVTELAAEGRGFNS"
BASE COUNT          347 a          601 c          517 g          396 t
ORIGIN      
        1 gatttggcga ggcccgtgcg tgccgtcgat acgattaccg cgtcagtcat gcttgtctcc
       61 acttcgaata cgaatagggt tggttcattg ggccgaaccc gcgagttcag cccgccgttc
      121 agcgcagcaa gtccgtcgat ccgatccgcg atacacccgc tgccgtcatc tgctcccagg
      181 cacgcgcaag cgagccgtcg agatcgattg cgcgacaggc atcgtcgatc acgaccactt
      241 cgaaacccgc gccgcgcgca tcgagcgccg accacgcgac gcaataatcc gtcgccagcc
      301 cgcagcaata gacccgcttc gcgccgacat cgcggagata acccgtgagg cctgtcggcg
      361 tgatgcgatc agcctccatg aaggccgaat aactatcgac atccacgtgg tgccccttgc
      421 ggatcaccag ccgcgcgtgc ggcacgtcca gatcacgatg cagggccgcg ccgtccgtgt
      481 tctgcacgca atgcgtcggc cataaaacct gctggccgta gctcagcgtg gtcatgtcga
      541 aaggcgcgcg gcccgcgtgg ttttccgcga aggaaatatg tttcgccgga tgccggtcct
      601 gcgtcaacac gacatgcgaa aacgcacgcg cgaggcggtt gatcacgggc acgacttcgt
      661 cgccgtgagc gaccgccaaa gcgccgcgtg gcatgaagtc attctggata tcgaccacaa
      721 gcaggacttc gtcagcgcct ttcatcgcga atctcacggg ttgtatccag ctcttggatc
      781 taactgttaa agccgcgccc ttctgcggcc agttcggtca cgcgcaccgc gggcttccat
      841 gcttcgccgt tggcttgggc tccgtacttg cgcatcgcgc gctcgacgtt gtacaggccg
      901 accgtatccg catacagcat cggtctaccg cgatacagcg ggaaaccgta gccggtcagg
      961 tagaccatgt cgatgtccga cgccttcgat gcaatccctt cttccaggat cagcgcgcct
     1021 tcgttgacga gcgcgaacac gagccgttcg acaatctcat cgtcggagat cttgcggcgc
     1081 gtgacgcctt gctccttcga atacgcaacg atcatctcgt cgacgatctt cgacggatgc
     1141 gccgtgcgat cgccggcctt gtagtcgtac cagcccgcgc cggtcttttg tccaaagcgc
     1201 ccggtgtcgc acaagcggtc cgcgatcttc gaatacttca gatccggctt ctcctgataa
     1261 cgacgcttgc gaatcgccca gccgatgtca ttgcccgcga ggtcgctcat gcggaacggt
     1321 cccatcgcaa agccgaattt ctcgattgca cggtccactt gcgccggcaa cgcgccttct
     1381 tcgagcatga aaagcgcttg gcgcaggtac tgctcgatca tccggttgcc gatgaaacca
     1441 tcgcagacgc ccgacaccac ggctgtcttc ttgatcttct tggcgagttg catgacggtg
     1501 gccagcacgt ctttcgatgt cttcgcgccg cgcacgactt ccagcagctt catcacgttg
     1561 gccgggctga agaagtgcat gccgacgacg tcttcgggac gtttggtgaa cgctgcaatc
     1621 ttgtcgacat cgagcgtaga cgtattcgat gccaggatcg cacccttctt cgcgacctga
     1681 tcgagtttcg aaaacacctg ctctttcaca ccgagttctt cgaacaccgc ctcgatgatc
     1741 aggtcggcgt ctttgaggtc ttcgtaagcg agcgtaggcg tgatcagcgc catgcgttct
     1801 tccagtttct cggcagtcag acggcccttt ttcactgcgc tttcgtaatt cttgcggata
     1861 g
//
LOCUS       DATGBK010001211         1748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_61257, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001211 DATGBK010000000
VERSION     DATGBK010001211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61257"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..575)
                     /locus_tag="VKJ77_16905"
     CDS             complement(<1..575)
                     /locus_tag="VKJ77_16905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016834422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC47003.1"
                     /translation="MTTSAPADAALYARFAEIFEQIGKGTIEREQGRELARDAVQSLK
                     DSGFTALRVPREYGGSGVSLPQYFRLLTRLGEADSNLPQIIRAHSGFIEQQLETGDEA
                     TRERWLGRIAKGETIGAATSERTGSTHNSVTVTPDADPGFVLLNGEKYYSTGTLYSEW
                     INVAGHDAQTDLHVLVRSDAPGVARTDDWDG"
     gene            832..>1748
                     /locus_tag="VKJ77_16910"
     CDS             832..>1748
                     /locus_tag="VKJ77_16910"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016834417.1"
                     /note="This protein belongs to a clade of FMN-dependent
                     monooxygenases, within a broader family of
                     flavin-dependent oxidoreductases, the luciferase-like
                     monooxygenase (LMM) family, some of whose members use
                     coenzyme F420 rather than FMN; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NtaA/DmoA family FMN-dependent monooxygenase"
                     /protein_id="HMC47004.1"
                     /translation="MTQLPNTPPRQLHLNVNILHSGFVPSAWRLADADPQAFIDVRHY
                     VRVAQIAEAAGFDAVFLADNASIADQIDFRPITALEPTILLASIAAATSHIGVIGTAS
                     TSYNEPYNIARRFATLDHVSGGRAGWNVVTTADLGSARNFGRDAVPDHAERYARAAEF
                     TSVVKALWDSWEDDAVIGDKTSGLFVDTAKVHPVSHRGTHFSVQGPLNVPRSPQGHPV
                     LVQAGASGDGRELAARHAEAVFSASQSFDESLAYGRDLKARAAAFGRGPDAVKVLAGL
                     TTIIGATEAEALRRRDELVDLIPWSYSLTR"
BASE COUNT          338 a          551 c          502 g          357 t
ORIGIN      
        1 aacccgtccc agtcgtcggt gcgcgccact cccggtgcat cgcttcgaac cagcacgtgg
       61 agatcagtct gcgcatcgtg cccggctaca ttgatccatt ccgaatagag cgtacccgtg
      121 ctgtagtact tctcgccgtt cagcagaaca aagccggggt ccgcgtcggg cgtgacggtc
      181 acgctgttgt gcgtggagcc ggtgcgctct gaggtagccg ctccaatcgt ctcgcctttc
      241 gcaatacgac ccagccagcg ctcgcgtgtt gcttcatcgc cggtttccag ttgctgctcg
      301 atgaaaccgg aatgcgcgcg aatgatttgc ggcaggttcg aatcggcttc gcccagacgc
      361 gtcaggagac ggaaatactg cggcaaagaa acaccactgc caccatattc gcgcgggact
      421 cgcaacgcgg taaagccgct gtctttcaaa ctctggacgg catcgcgagc gagttcacgg
      481 ccctgctcac gctctatggt ccctttgccg atctgctcga atatctccgc gaaacgcgcg
      541 taaagcgcag cgtccgccgg tgctgacgtc gtcatttact tctccacaat ttgaacaggt
      601 gcgaacgatg aggataagtg ccgcgccaag ccgccggcaa cgaacgatag gtgctaacca
      661 tatgcgcaag ccgggtttcc tgagccttgt tcctcatacc gcgaggcgaa tgcggtttag
      721 tgctttagtg ctctcacgta tatcgatcgg cggatttatt ggtcgctttg cgcggctgtc
      781 cgattaagaa tccaaagtca gctaatgtca gccaacaagc atttgagcaa gatgacccaa
      841 cttccgaaca cgccgccccg acaacttcac ctcaacgtca atatcctgca ttcgggtttc
      901 gttccatctg cctggcgtct ggccgatgca gatccgcaag cgttcatcga cgttcgtcat
      961 tacgtgcgag tcgcacagat cgcggaggca gccggcttcg acgccgtctt tctcgccgat
     1021 aacgcttcta tcgccgatca gatcgacttt cgtccgatca ctgcgctcga gccgaccatc
     1081 ttgctggcca gcatcgcggc agcgacctcg catatcggcg tgatcggtac tgcgtccacg
     1141 agttacaacg agccgtacaa catcgcgcgc cgtttcgcca cactcgacca cgtcagcggc
     1201 ggacgtgcag gctggaacgt cgtgaccact gccgacctgg gctcagcacg caatttcggg
     1261 cgcgatgcgg tgcccgatca cgccgagcgc tacgcacgcg ccgcggaatt caccagcgtc
     1321 gtcaaagcgc tctgggacag ttgggaagac gacgcggtta tcggtgataa aacgagcgga
     1381 ctattcgtcg atacggccaa ggttcatccc gtctcgcatc gaggcacgca tttctcggtg
     1441 cagggtccgt tgaatgtgcc gcgttccccg caaggacatc cggtgctggt gcaagccggc
     1501 gcttcgggcg atggccgcga gctcgccgcg cgccatgccg aggcggtgtt ctcggcctcc
     1561 caatcgttcg acgaatcttt agcctatggg cgcgatctga aggcgcgcgc agcggctttt
     1621 ggacgaggcc ccgacgccgt gaaagtcctg gcgggactga ccacgatcat cggtgcaacg
     1681 gaggccgaag ccttgcgccg ccgagacgaa ctggtggacc tgatcccatg gagttatagc
     1741 ctcacccg
//
LOCUS       DATGBK010001212         1671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_153213, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001212 DATGBK010000000
VERSION     DATGBK010001212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153213"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VKJ77_16915"
     CDS             <1..200
                     /locus_tag="VKJ77_16915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47005.1"
                     /translation="PDPKSQSILGKLFRAQVHAQPAPHASAPADSLESMFQRLRGPVA
                     PAPASVNSGAGSWLAKRDSSS"
     gene            197..985
                     /gene="bcsQ"
                     /locus_tag="VKJ77_16920"
     CDS             197..985
                     /gene="bcsQ"
                     /locus_tag="VKJ77_16920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090540 - bacterial cellulose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsQ"
                     /protein_id="HMC47006.1"
                     /translation="MKVITVVSAKGGVGKTTLAANLASVLAARGRRVIALDLDPQNAL
                     RLHFGIPLDSIDGLSRATLGGDPWQTVMFDGVDGVTVLPYGAVVEDDRRRFESHIDRD
                     PQWLAQSLERLGLDAADIVIVDTPPGSSVYTRTALCASNFALNVVLPDAASYAAIPQM
                     ERMIEAYATPRADFVGTGYVVNQVDQSRQLTKDVLKVLRNLLGDKLFPGVIHLDEGVS
                     ESLACDTTLIHYDPLSQAAADLRTCGEWLTNAVDSKQLSPRSVA"
     gene            982..>1671
                     /locus_tag="VKJ77_16925"
     CDS             982..>1671
                     /locus_tag="VKJ77_16925"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HMC47007.1"
                     /translation="MSKPRARALSEADEVASRLEHFVDSKIWSSRIFTTILTLFALSS
                     MYFVWTVPLEFTQQLVFACCCFALALAFRRLRGQYATLVMIMLSVAVTGRYMYWRLTE
                     TTYWERPLDAAWGLLLVAAEVYSAIVLMLGYFQTAWPLQRKPMPLPANRDEWPTVDVF
                     IPTYNEPLGVVKPTIYAALAIDYPADKISIHVLDDGRRPEFKAFCEEVGVNWTIRTHN
                     RHAKAGNINEAL"
BASE COUNT          292 a          544 c          514 g          321 t
ORIGIN      
        1 cgcctgatcc aaaaagccag tcgatcctcg gcaagctgtt ccgtgcgcaa gtgcacgcgc
       61 agcctgcgcc gcacgcaagc gcaccggcgg attcactgga gtcgatgttc cagcgcttac
      121 gcggacctgt agcgccagcg ccggcctccg tcaactcggg cgcgggttca tggctcgcca
      181 agcgcgactc atcgtcatga aagtcatcac cgtcgtctct gccaaaggcg gtgtcggtaa
      241 aaccacgctc gcggcgaacc tggcctcggt cctcgctgcg cgcgggcggc gcgtgatcgc
      301 gctcgacctg gatccccaga acgcgctgcg cctgcatttc ggcattccgc tcgacagcat
      361 tgacggactg tcgcgcgcca ccctcggcgg cgacccgtgg caaaccgtga tgttcgacgg
      421 tgtcgacggc gtcactgtgc tgccctacgg cgcggtggtg gaagacgatc gccgccgctt
      481 cgaatcgcac atcgaccgtg acccgcagtg gctcgcgcaa tcgctggaaa ggctgggact
      541 cgatgccgcg gacatcgtga tagtcgatac cccgccgggt tcctcggtct acacgcgcac
      601 ggcgctgtgc gcgtcgaatt tcgcgttaaa cgtcgtgctg cccgacgccg cttcatacgc
      661 cgccatcccg cagatggaac gcatgatcga ggcttacgcc acgccgcggg cggattttgt
      721 gggcacgggt tacgtggtga accaggtcga ccagtcgcgg caattgacga aggacgtgct
      781 caaggtgctg cgcaacctgc tcggcgacaa gctgttcccg ggcgttatcc accttgacga
      841 aggcgtgagc gagtcgctcg cctgcgacac cacgctgatc cattacgacc cgttgagcca
      901 ggccgccgcc gatctgcgta cctgcggcga atggctcacc aacgcggtcg attccaagca
      961 gctctcgccg aggagcgtcg catgagcaag ccacgcgcac gagcattgtc cgaagccgac
     1021 gaggttgcgt cgcggctgga acattttgtc gattcaaaga tctggagcag ccggatcttt
     1081 accacgatcc tcacgctgtt cgccctctcg tcgatgtatt tcgtctggac ggtaccgctc
     1141 gagttcacgc agcaactggt gttcgcgtgc tgctgttttg ctttggcact tgcgttccgg
     1201 cgcctgcgcg gccagtacgc cacgttagtg atgatcatgc tgtccgtggc ggtcacgggg
     1261 cgctacatgt actggcggct gaccgagacg acctattggg aacgtccgct cgatgccgcc
     1321 tggggtttgc tgctggtcgc ggccgaggtc tactcggcca ttgtgctgat gctcggctat
     1381 ttccagaccg cctggccgct gcagagaaag ccgatgccgt tgccggcaaa ccgcgatgaa
     1441 tggccgactg tcgacgtctt cattcccacg tataacgagc cgctcggcgt ggtcaagccg
     1501 actatctacg cggcgctcgc gatcgactat ccggcagaca agatctccat tcatgttctc
     1561 gatgacggcc gccgtcccga gttcaaggcg ttctgcgagg aagtcggcgt caactggacg
     1621 atccgcacgc acaatcgcca cgcgaaggcg ggcaacatca acgaagcgct g
//
LOCUS       DATGBK010001213         1880 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_61277, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001213 DATGBK010000000
VERSION     DATGBK010001213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61277"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..664
                     /locus_tag="VKJ77_16930"
     CDS             47..664
                     /locus_tag="VKJ77_16930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007735152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47008.1"
                     /translation="MLVAIAIFAVIAVLSWRGLDQIMRGRTTITNAMEDERVEAQLFD
                     QMRIDARQAATEDEAGQAAVAIGGNALQIVRGVYTAGVAPRLQVVRYRLTDNGRVVRF
                     ASPTLGNVGEVRRALSASDNSDGWTAIPLMGGVSTFATRAYVPQSGWTMRMADVAARI
                     TLNDNNLKVPQLGNEPLARAVTGIQIAVGAHNLAQPITRVFLIGE"
     gene            667..1806
                     /gene="gspK"
                     /locus_tag="VKJ77_16935"
     CDS             667..1806
                     /gene="gspK"
                     /locus_tag="VKJ77_16935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HMC47009.1"
                     /translation="MRSSSAQAKGVRSARPSRHVQQRGVAIISALLVVALSAIIVSGL
                     LWREQVQVRRIENQKLLAQAQWISRSALDWTRLILRSEADTSPTVTYLGGVWGVPIAK
                     TRLSDFLGQIGDVRAQQGASTYLSGSIEDAQAKFNLRNLVSTPTPGLLIIDAQEIASF
                     QRLLTLLGLDASLAKNVALQIRAGLAQSATRFQAQSTTAAANSTPSTVAAAIAQGGGT
                     GGGNFTDDPGLADADSDTPVAPLQMINVESLLDVPGFSPEAVEKLRPFVTVLPTTTSV
                     NMNTATAEVIAATVPGMSLSQAQAFVARRETVFFHDTGNVQLALTGAGANTANIDLNQ
                     MDVTTKYFLIHGRVQHERAEVDRTTLLYRDPATHSTRIVYVRDQL"
BASE COUNT          332 a          569 c          633 g          346 t
ORIGIN      
        1 cagcccacgg ggcgatcgtg gcgttcgtgg ctttacgctg atcgagatgc tggtcgccat
       61 cgcgatcttc gcggtgatcg cggtgctgtc gtggcgtggc cttgaccaga tcatgcgcgg
      121 ccgcacgacc atcaccaacg cgatggaaga tgaacgcgtg gaggcgcaat tgttcgacca
      181 gatgcgcatc gacgcccgtc aggccgccac cgaagacgaa gccggccagg ctgcggtggc
      241 tatcggcggg aatgcgctgc agatcgtgcg cggtgtctac acggccggcg tggcgccgcg
      301 cttgcaggtc gtgcgctacc gcttgacgga caatggccgg gtggtgcgat ttgcgtcgcc
      361 gacgctcggc aatgtgggtg aggtgcggcg ggcgttatcg gcgtcggaca actccgacgg
      421 ctggaccgcg ataccgctga tgggaggcgt ctcgaccttc gccacgcgcg cctacgtgcc
      481 ccaatccggc tggacgatgc gcatggccga cgtggcggcg cgaatcacgc tgaacgacaa
      541 caacctgaaa gtgccgcagc tcggcaatga gccgttggcg cgcgcggtga cgggcattca
      601 gatcgcggtc ggcgcgcaca atctggcgca gccgatcacg cgcgtgtttc tgatcggaga
      661 atgaccatgc gttcttcatc ggctcaggcg aaaggggtca ggtcagcgag gccttccagg
      721 catgtgcaac agcgcggcgt cgcgatcatc agtgcgctgc tggtcgtggc gttgtcggcc
      781 atcatcgtgt cgggattgtt gtggcgcgag caggtgcagg tccgccgtat cgagaaccag
      841 aagctgctcg cacaggcgca atggatctcg cgcagcgcgc tggactggac ccggttgatc
      901 ctgcgatccg aagcggatac ctcgccgacc gtcacgtatc tcggcggcgt atggggtgtg
      961 ccgatcgcga aaacgcggct gtcggatttc ctcggacaaa ttggcgatgt gcgggcgcag
     1021 cagggcgcat caacgtatct gtcgggatcg attgaagacg cgcaggccaa gttcaacctg
     1081 cgcaacctcg tctccacgcc tacgcccggc ttgctgatca tcgatgcgca ggagattgcg
     1141 tcgttccagc ggctgttgac gctgctcggg ctggacgcgt ctctggcgaa aaacgtcgcg
     1201 ctgcagattc gcgccggact ggcgcaatcg gcgacgcggt tccaggcgca atcgaccacc
     1261 gccgcagcga acagcacgcc gtccaccgtg gcggccgcga tcgcgcaggg cggcggaacg
     1321 ggcggcggca atttcaccga tgaccccggc ctcgccgatg cggacagcga tacgcccgtc
     1381 gcgccgctgc agatgatcaa cgtggagtcg ctgctcgatg tccccggttt ttcgccggaa
     1441 gccgtggaga aattgcggcc gttcgtgacg gtgctgccta ccacgacgtc ggtgaacatg
     1501 aataccgcga cggctgaagt gattgcggcg acggtgcctg gcatgtcgct ttcgcaggcg
     1561 caggcgtttg tcgcgcgccg cgagaccgtg tttttccacg acaccggcaa cgtgcagctc
     1621 gcgctgaccg gcgcgggcgc gaacaccgcc aacatcgatt tgaatcagat ggacgtgacc
     1681 accaagtatt tcctgatcca cggccgcgtg cagcacgagc gggcggaagt ggaccggaca
     1741 actttgcttt atcgcgatcc agcgacgcat agcacgcgta ttgtctatgt tcgtgaccag
     1801 ctttgatgcg ttggacggat ttcatcgcgg caattccatt gcggcaattt cattgcgacg
     1861 tcgcagtaca gtgaataact
//
LOCUS       DATGBK010001214         2039 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245760, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001214 DATGBK010000000
VERSION     DATGBK010001214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245760"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..608)
                     /locus_tag="VKJ77_16940"
     CDS             complement(<1..608)
                     /locus_tag="VKJ77_16940"
                     /inference="COORDINATES: protein motif:HMM:NF024772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47010.1"
                     /translation="MNVETNLTPATSRARFLALTASAAGALAVPSIALGATEPIRVGL
                     VQSDVSGLAFFAQQQRFFAKAGVDAQIQSFTNGGSIIAAIASKALDVGFANLTSIAAA
                     RQRGVPIKIVAPACLYTSKAPVTVLAKARGSKLHTGADLRGKTIAVSTLRGELQVAAA
                     EWIDKHGGDATKTSFLEIPFAAMAATLAAGRIDAAMVTEPAIT"
     gene            complement(598..1320)
                     /locus_tag="VKJ77_16945"
     CDS             complement(598..1320)
                     /locus_tag="VKJ77_16945"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HMC47011.1"
                     /translation="MSDALTADILTPDIAAGLDELAKAHRILAMLGHEDLTSGHLSWR
                     DPHGRGFWMKRSQIGMDEAFVADDFVLLDFDGRKLAGPGSCHVEWPIHAEIMRSRPEV
                     KAVGHTHAFYSQIFSTTDEPLRPVGKQGAWFDDVPKFKQTCNLIRTPELGRSLAATLG
                     GADAVFILAHGIAFAGTTIREMTLIGVFLEKAVRAHVTIASTGFAYSWPTDEDIRSKR
                     GETRTPRGIDNYFNYLERHLER"
     gene            complement(1317..>2039)
                     /locus_tag="VKJ77_16950"
     CDS             complement(1317..>2039)
                     /locus_tag="VKJ77_16950"
                     /inference="COORDINATES: protein motif:HMM:NF044751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HMC47012.1"
                     /translation="HLVIPTGGLGMNTGAGDAIDLGWKLAAVLHGIAGDGILDSYEAE
                     RRQIGLRNVRASGAAMRGRFNGWRMADDEAEMARRFDVEQRKVTEILGIEAGYRYTDS
                     PAICAEPGDGPDPDNYAYVPTTWPGARLPHVWLDDGTALADRLGMGFSILRLGSAPPS
                     VDALAQALRAGGTPVDIVTLPDVAARRILERDLILVRPDLHVVWRGDQPPLDPRAVAA
                     IASGRADAPAIYEPANASGAVR"
BASE COUNT          389 a          665 c          624 g          361 t
ORIGIN      
        1 gtaatcgcgg gctccgtcac cattgccgca tcgatgcgcc ccgctgcaag cgtagcagcc
       61 atcgccgcaa acggaatttc caggaacgac gtcttggtcg cgtcgccgcc gtgtttatcg
      121 atccactcgg ccgccgcaac ctgaagttct ccgcgcaggg tcgacacggc gatcgtcttg
      181 ccgcgcaagt cggcgccggt gtgcagcttg gacccgcgcg cttttgccaa gaccgtcacc
      241 ggcgctttgc tcgtatacaa acatgccggt gcaacaatct taatcggcac gccgcgctgg
      301 cgcgcagcgg caatcgaagt caagtttgca aaaccaacat cgagcgcttt tgaggcgatc
      361 gcggcgatga tcgagccacc gttggtaaat gattgaattt gcgcgtcaac gccggccttc
      421 gcgaagaaac gctgttgctg agcaaaaaaa gccagccccg aaacgtcgct ttgcaccaaa
      481 ccgacgcgga tgggttccgt ggcgccgagc gcgatactcg gcaccgccaa ggcgcccgca
      541 gcggatgcgg ttagcgcgag aaagcgcgcg cggctcgtgg ccggcgtcag gttcgtttca
      601 acgttcaagg tgacgctcca aataattgaa gtaattgtcg atcccgcgcg gcgtgcgcgt
      661 ctcaccgcgt ttgctgcgga tgtcttcgtc ggtcggccag ctgtaggcga aaccggtcga
      721 tgcgatggta acgtgggcgc gcacggcctt ttcgaggaac acaccgatca acgtcatctc
      781 acgaatcgtc gttccggcga acgcgatgcc gtgcgcaagg ataaagacgg cgtccgcgcc
      841 gccgagcgtc gcggccagcg accggccgag ctccggcgtg cggataaggt tgcacgtctg
      901 cttgaacttc ggcacatcat cgaaccatgc gccttgctta ccgacgggcc gcaacggttc
      961 gtcggtggtc gaaaaaatct gcgaataaaa cgcgtgcgtg tgacccacgg ccttgacctc
     1021 cgggcggctg cgcatgattt ctgcgtggat cggccactca acgtgacacg agcctggtcc
     1081 cgcaagcttt cggccgtcga aatcgagcag cacgaaatca tcggcgacaa acgcttcatc
     1141 cattccgatc tgactgcgct tcatccaaaa tccgcggccg tgcgggtcgc gccacgacag
     1201 atgacccgat gtcaaatcct cgtgcccgag catcgcaaga atccggtgcg ctttggcaag
     1261 ctcatcgagt ccggcggcga tgtccggcgt cagaatatcc gctgtcaatg cgtcgctcaa
     1321 cgtaccgctc cggatgcatt agccggttca tagatcgcag gcgcgtccgc gcgtccgctc
     1381 gcgatcgccg cgacggcgcg cggatcgagc ggaggctggt cgccgcgcca caccacgtga
     1441 aggtccggcc gtaccaggat gagatcgcgt tcgagaatgc ggcgcgcggc aacgtcgggc
     1501 agcgtgacga tatcgacggg tgtcccgccc gcgcgcagcg cctgcgcgag cgcatcgacc
     1561 gagggcggcg cacttcctaa acgcaaaatc gaaaatccca tgccgagccg atccgcgagc
     1621 gcggttccgt cgtcgagcca cacgtgcggc agccgcgcac cgggccacgt ggtcggtacg
     1681 tacgcgtaat tatcagggtc gggtccgtcc cccggctcgg cgcaaatcgc gggcgagtcg
     1741 gtataacgat aacccgcctc gatgcccaga atttcggtga ctttgcgctg ctcgacatcg
     1801 aaacgccgtg ccatttccgc ttcgtcatcc gccatgcgcc agccgttgaa gcggccgcgc
     1861 atcgccgcgc cggaagcgcg aacgttgcgc agaccgatct gccggcgttc ggcctcatat
     1921 gaatcgagga tgccgtcgcc cgcgatgccg tgcagcacgg cagcgagttt ccaacccagg
     1981 tcgatcgcat ctccggcacc cgtgttcatc cctaagccgc cggtgggaat caccagatg
//
LOCUS       DATGBK010001215         1651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_129971, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001215 DATGBK010000000
VERSION     DATGBK010001215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129971"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..633)
                     /locus_tag="VKJ77_16955"
     CDS             complement(<1..633)
                     /locus_tag="VKJ77_16955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HMC47013.1"
                     /translation="MSNSLSPDAAVPAVAVHTPVPPVPRARIAAARVLVVGDVMLDRY
                     WFGDVNRISPEAPVPVVHVQRQEDRLGGAANVARNAAALGAQAGLLCVVGHDEPGERI
                     VELLGESRVTAFLERDPALLTTIKLRVLSRQQQLLRVDFENSPTHEVLSACLARFETL
                     LPQHDVILMSDYAKGGLTHVTQMIADAKRAGKPVLVDPKGDDWDRYRGATL"
     gene            complement(611..>1651)
                     /locus_tag="VKJ77_16960"
     CDS             complement(611..>1651)
                     /locus_tag="VKJ77_16960"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010105519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HMC47014.1"
                     /translation="DKSTVPVGTAQHVRNVVEQELKARGIEPTGKNVFSVLSNPEFLK
                     EGAAVDDFMRPDRIVLGVDDDEAGQIAREKIKRLYAPFNRNHDRTLYMDVRSAEFTKY
                     AANAMLATRISFMNDLSNLADAVGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPK
                     DVQALAQTARENGHRLRILEAVEEVNDLQKEVLVGKITKRMGEDLRGRTFAVWGLAFK
                     PNTDDMREASSRRLIGALLERGATVRAYDPVALDESRRVFALDLADKPQQLERLHFVD
                     SQKDALPGADALVIVTEWKEFKSPDFAHLKSELKMPVIFDGRNLYEPEAMAELGIDYF
                     AIGRPHVELPVA"
BASE COUNT          314 a          547 c          479 g          311 t
ORIGIN      
        1 cagcgtggcg ccgcgatacc gatcccagtc gtcacccttc ggatcgacca gcaccggttt
       61 gccggcccgc ttcgcgtccg cgatcatttg cgtcacatgc gtcaggccgc ccttcgcgta
      121 atccgacatc aggatcacat cgtgttgcgg caaaagcgtt tcgaaccggg cgagacacgc
      181 gctgagaact tcatgcgtcg gcgaattctc gaagtcgact cgcaacaatt gttgctgccg
      241 cgacagcacg cgcaacttga tggtggtgag caatgcggga tcgcgttcaa ggaacgcagt
      301 gacccggctc tcgcccagca attccacaat gcgttcgccc ggctcatcgt gcccgaccac
      361 gcacagcaag cccgcttgag cacccagcgc ggccgcgttg cgcgccacgt tcgccgcacc
      421 gccaagccgg tcttcctggc gctgtacatg cacgaccggc acgggcgctt ccggggagat
      481 gcggttcaca tcgccgaacc agtagcggtc gagcatcacg tcaccgacca ccagcacacg
      541 ggccgccgca atgcgcgcac gcggaaccgg tggaacggga gtgtgtacag cgactgcggg
      601 caccgctgcg tcaggcgaca gggagttcga catgaggacg tcctattgca aaatagtcga
      661 tgccgagttc cgccatcgct tcgggttcat acaggttgcg gccatcgaaa atgaccggca
      721 ttttgagctc gctcttcaga tgcgcgaagt ccgggctctt gaattccttc cactcggtca
      781 cgatcacgag cgcgtccgca ccgggcaacg cgtccttttg tgaatcgacg aaatgcaggc
      841 gttcgagttg ctgcggttta tcggcgagat cgagcgcgaa tacgcggcgg ctttcatcca
      901 gcgccacggg gtcataagcg cgaaccgtcg cgccgcgctc gagcagcgca ccaatcagcc
      961 ggcggctcga cgcctcgcgc atgtcgtccg tattcggctt gaacgccagg ccccacacgg
     1021 caaacgtgcg gccgcgcaag tcttcgccca tgcgcttcgt gatcttgccg acgagcactt
     1081 ccttttgcag atcgttcact tcttccacgg cttcgagaat ccgcagccga tgcccgttct
     1141 cacgcgccgt ctgcgccaac gcctgcacgt ccttcgggaa acacgaaccg ccgtagccgc
     1201 aaccggcata caggaagtga tagccgatac gcgggtccga accaataccg cgacgcaccg
     1261 cttcgatatc cgcacccacg gcatcggcga gattcgacaa atcgttcatg aacgagatac
     1321 gcgtggcgag catggcgttc gccgcgtact tcgtgaactc tgccgaacgc acgtccatat
     1381 agagcgtgcg atcgtgattg cggttgaacg gcgcgtagag gcgcttgatc ttctcgcgcg
     1441 caatctggcc ggcttcgtcg tcgtcaacgc cgagcacgat gcggtcggga cgcatgaagt
     1501 cgtcgacagc cgccccttcc ttcaggaact cgggattcga tagaaccgaa aagacgttct
     1561 tccccgtcgg ctcaattccg cgcgccttca gttcctgctc gactacgttg cgcacgtgct
     1621 gggctgtgcc gactgggacc gtcgatttat c
//
LOCUS       DATGBK010001216         1864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_269588, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001216 DATGBK010000000
VERSION     DATGBK010001216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1864
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269588"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..881
                     /locus_tag="VKJ77_16965"
     CDS             <1..881
                     /locus_tag="VKJ77_16965"
                     /inference="COORDINATES: protein motif:HMM:NF024240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC47015.1"
                     /translation="SAGVALQQGDARGRVQPASLMFRLSHVDLNALSAYVRSHPDQMR
                     SSLKMHERTPAALTAVAGLYDIWNAARESGEVTIPRELVSFFISPYPDEVSVNMTRVT
                     DIDPLDPDDLTRAEVEARAQTMQLLTFFRKSVPGFANARIAATATQIGIRESRRIVGE
                     YTLTAADILEGRTFDDAVARSAYPIDIHNPSGSGTTTHRLPPGTSYEIPYRCMVPQYV
                     ERLLVAGRCISTTHEALASTRLTPTVMTLGQAAGTAAAMSVREAVPVRALSYDALRAR
                     LIADGVDLRRAEPVRA"
     gene            874..1224
                     /locus_tag="VKJ77_16970"
     CDS             874..1224
                     /locus_tag="VKJ77_16970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47016.1"
                     /translation="MPNIRRIAADSRVTVEFADLGDWDDATLVSEYKGGKEPVIRINS
                     RVVARYRRVAPAGVQALVDLAIAHELYHHYEAIGKTPRIRDRGAREAAADAFAREHVT
                     VDPQLDAFLESGCV"
     gene            1275..>1864
                     /locus_tag="VKJ77_16975"
     CDS             1275..>1864
                     /locus_tag="VKJ77_16975"
                     /inference="COORDINATES: protein motif:HMM:NF013986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BadF/BadG/BcrA/BcrD ATPase family protein"
                     /protein_id="HMC47017.1"
                     /translation="MNERGDILGTGLSGPSDYVDEPEDSRKCADACEAAVAQALVNSG
                     RDARAALDAVVVGLSGFEGELHGVAPQFNTRRCRFVHDAVIALAGAISVRPAVVVIAG
                     TGSIAYGEDGSGASVEVGGYGYLFGDEGSGFSIGRAALAQAMAHTDRGMKSRLGDAAL
                     PYFNVPDMRALVRGFYSRQISRADIAGFARVVFDAAR"
BASE COUNT          336 a          561 c          598 g          369 t
ORIGIN      
        1 cgagtgccgg cgttgcgctg cagcaaggtg atgcgcgcgg acgcgtgcag ccggccagcc
       61 tcatgtttcg tttgagtcat gtagacttga acgcactgtc cgcgtacgtg cgctcgcacc
      121 ccgatcagat gcgcagttcg cttaagatgc acgagcgtac gcccgccgca ttaacggccg
      181 tcgccggatt gtacgatata tggaacgccg cccgtgagag cggcgaagtc acgattccgc
      241 gcgaactcgt ctcgttcttc atctcgccgt atcccgacga agtaagcgtg aacatgacgc
      301 gcgtgaccga tatcgatccg ctcgatcccg acgatctcac gcgcgccgaa gtcgaagcgc
      361 gcgcacaaac gatgcaactg ctgacgttct ttcgcaagag cgtgccgggt tttgcaaacg
      421 cacgcattgc ggcgacggca acgcaaatcg gcattcgcga atcgcgccgc atcgtcggcg
      481 aatacacgct tacggctgcc gacatcttgg aaggacgcac gtttgacgat gcggtcgcgc
      541 gtagcgcgta tccgatcgac attcataatc catcgggttc cggaacgacg acgcatcggc
      601 tgccgcccgg cacaagttac gagatcccgt atcgctgcat ggtgccccaa tatgtcgagc
      661 gcctgctcgt cgcgggccgc tgcatttcca ccacgcacga agcgctggca tcaacgcgtt
      721 taacgcccac cgtcatgacg ctcgggcaag cggcgggaac tgcggctgca atgtccgtgc
      781 gcgaggccgt tcccgtgcgc gcgctttcgt acgatgcgct gcgcgcgcgc ctcattgccg
      841 acggtgtcga tctgcggcgt gcggagcccg tgcgtgccta atatacgccg aattgccgcc
      901 gattctcggg tgaccgttga attcgccgac ttaggcgatt gggatgatgc aacgcttgtc
      961 tccgaatata aaggcggcaa agagccggtc atccggatta actcgcgcgt cgtcgcgcgc
     1021 taccggagag tcgcgccggc gggcgttcaa gccttggtcg atctagcgat cgcgcacgag
     1081 ctctaccatc attacgaagc cattggaaaa acaccgcgaa tccgcgatcg cggagcgcgt
     1141 gaagcggcgg ccgatgcgtt cgcgcgcgaa cacgtgaccg tcgatccgca actcgatgca
     1201 tttctggaaa gcggctgcgt gtgatactcg ttgcgggcgt cgatggcggc caatcgtcaa
     1261 cgacggccgc catcatgaac gaacgcggcg atattctggg cacgggactt tccggcccga
     1321 gcgattacgt tgatgaaccg gaagattcgc ggaaatgtgc cgatgcctgt gaagccgctg
     1381 ttgcgcaggc gcttgtaaac tctggtcgtg acgcgcgggc cgcacttgat gccgtcgtgg
     1441 tcgggttaag cggttttgaa ggtgagctgc acggcgtggc gccgcagttt aatacgcgcc
     1501 gctgccgctt cgtgcacgat gccgtgatcg cactggcggg tgcgatttcg gtgcggcctg
     1561 cagtcgtcgt gatcgcgggg acgggttcga ttgcatacgg tgaagacggg tccggcgcat
     1621 ccgtcgaggt cggcggatac gggtatttat tcggcgacga agggagcgga ttttccatcg
     1681 gccgcgcggc gctcgcgcaa gcgatggcgc acaccgatcg cggaatgaaa tcccgcctcg
     1741 gtgatgctgc gttgccctat ttcaacgtgc ccgatatgcg cgcactcgtc cggggttttt
     1801 attcgcggca aatcagtcgc gcggacatcg cgggtttcgc gcgggtcgtt ttcgatgcgg
     1861 cgcg
//
LOCUS       DATGBK010001217         3493 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_14281, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001217 DATGBK010000000
VERSION     DATGBK010001217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3493
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14281"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..248
                     /locus_tag="VKJ77_16980"
     CDS             <1..248
                     /locus_tag="VKJ77_16980"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772574.1"
                     /note="lipoyl/octanoyltransferase; catalyzes the transfer
                     of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto
                     lipoate-dependent enzymes like pyruvate dehydrogenase and
                     the glycine cleavage system H protein; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase"
                     /protein_id="HMC47018.1"
                     /translation="LGLKIRNGCSYHGVSLNVKMDLQPFLSINPCGYAGLETVDMATL
                     GVTAEWNDVAQTLAENLTHHIGGHRATAAQPQNGVAV"
     gene            262..1284
                     /gene="lipA"
                     /locus_tag="VKJ77_16985"
     CDS             262..1284
                     /gene="lipA"
                     /locus_tag="VKJ77_16985"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HMC47019.1"
                     /translation="MTDVTGNLAGSTAASTPASAPATAPYDATAKQKAQAKTARIPIK
                     IIPIEKLKKPEWIRVKAATGSSRFTEIKQILREHNLHTVCEEASCPNIGECFGKGTAT
                     FMIMGDKCTRRCPFCDVGHGRPDPLDADEPLNLARTIGALKLKYVVITSVDRDDLRDG
                     GAAHFVECIRQVREHSPMTRIEILTPDFRGRLDRAIGILTAAPPDVMNHNLETVPRLY
                     KEARPGSDYAHSLKLLKDFKALHPEVATKSGLMVGLGETEEEILQVMRDLRAHNVDML
                     TIGQYLQPSEHHLPVRSYVHPDRFKMYEEEAYKMGFTHAAVGAMVRSSYHADQQAHDA
                     GLVGAM"
     gene            1758..3041
                     /locus_tag="VKJ77_16990"
     CDS             1758..3041
                     /locus_tag="VKJ77_16990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006835 - dicarboxylic acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HMC47020.1"
                     /translation="MKKPFYKVLYVQVLLAIAIGIALGHFYPALATEMKPLGDGFIKL
                     IKMVIGPIIFCTVVTGIAGMEDMKKVGRVGGKALLYFEVVSSFALVLGLAATHILKPG
                     VGFNIDPATLDAKAVASYAAKAHGQTTTDFLMHIIPDTISSAFAQGEILQILLVALLF
                     GAVLATAGEKGRVVTSFIEGLSHILFGIVRIITKLAPIGAFGAMAFTIGKYGIGSLVP
                     MLKLIGTFYLTSIVFVVVVLGAIAKMVGFNILRFVAYIKEEMLIVLGTSSSEAALPQL
                     MLKLEKLGCSRSVVGLVVPTGYSFNLDGTNIYMTMAVLFIAQATNTDLTWTQQLTLLA
                     VTMLTSKGASGVTGAGFITLAATLAVVPTIPLSGMVLILGIDRFMSECRALTNIVGNG
                     VATVVVSAWEKELDRDKLRDQLKHGAVDTEAETVS"
     gene            3111..>3493
                     /locus_tag="VKJ77_16995"
     CDS             3111..>3493
                     /locus_tag="VKJ77_16995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HMC47021.1"
                     /translation="MKAAKHSVADASPRPFTGVSAKASTEASFETAFEAAHATIGGPH
                     RLEPVQVTRRLVVFLLLLAALAGVCALTWSIAWQRGLDTLRQNAAARVDRTTAELKST
                     LDRYEYLPYLLSRHPFVQEVLADPNP"
BASE COUNT          732 a         1053 c         1025 g          683 t
ORIGIN      
        1 cgctcgggct gaaaatccgc aatggctgca gttatcacgg tgtgagcctc aacgtgaaaa
       61 tggacctgca accgtttctc tcgatcaacc cgtgtggcta cgccggactc gaaaccgtcg
      121 acatggcaac actcggcgtg acagcagaat ggaacgacgt ggctcaaacg ctggcagaaa
      181 acctcactca ccatatcggc ggccatcgcg cgaccgccgc ccaaccgcag aacggcgtgg
      241 ccgtctgaat ggaccgaccg aatgactgac gtaaccggaa atctggctgg cagtaccgcc
      301 gcatcaaccc ctgcttcagc gcccgctact gcgccctacg acgccaccgc caagcagaaa
      361 gcgcaggcga aaacggcgcg catcccgatc aagatcatcc cgatcgaaaa gctgaaaaag
      421 ccggaatgga tccgcgtgaa ggccgcaacg ggtagctcac gatttaccga gatcaagcag
      481 atcctgcgtg aacacaacct gcatacggtt tgcgaagaag cgagctgccc gaacatcggc
      541 gaatgtttcg gcaagggcac tgcgaccttc atgatcatgg gcgacaaatg cacgcgtcgt
      601 tgcccgttct gcgacgtggg ccacggtcgc cccgatcccc tcgacgccga cgaaccgctg
      661 aacctcgccc gcacgatcgg cgcgctgaag ttgaagtacg tggtgatcac gagcgtggat
      721 cgcgatgacc tgcgtgatgg cggcgctgcg cacttcgtgg aatgtatccg gcaagtccgc
      781 gagcattcgc ccatgacgcg catcgaaatc ctgacgccgg attttcgtgg ccgtctggat
      841 cgcgcaatcg gcatcctgac cgccgcgccg cctgacgtga tgaaccacaa tctcgaaacg
      901 gtgccgcgtc tgtacaagga agcgcgtccg ggttcggatt atgcgcattc gctgaagctg
      961 ctgaaggact tcaaggcgct gcatccggaa gtggcgacca agtccggcct gatggtcggc
     1021 ctgggcgaaa cggaagaaga aatccttcaa gtcatgcgcg acctgcgggc gcacaacgtc
     1081 gatatgctga cgatcgggca gtatttgcag ccttccgaac atcacctccc ggtgcgctcg
     1141 tacgttcatc cggataggtt caagatgtac gaagaagaag cgtacaagat gggcttcacg
     1201 cacgccgccg tgggcgccat ggtgcgttcg agctatcacg cggatcagca ggctcatgac
     1261 gcgggtctgg tcggcgcgat gtaagtcttc tggcttggct ggtacgaaaa aacccacgga
     1321 aacgtgggtt ttttcgtttt cagaccgctc cgattgcccg gaacgcgcgg ctttgccgga
     1381 gccccatcca gcgtccccaa aacctcggga aagcccgtag ataaagcgtc tcagggataa
     1441 cccgaatgcc gtccggatgg tcggacggtc caatccccga attccggaaa cacggattct
     1501 tgctgcttcc tgtcaacaaa aagcccttaa aaatcaacac tcaatgcatg tcaaaaactg
     1561 gcatcgacct tgcaatatga agggctggcc agacaggcca taaaacaaga cagggagacg
     1621 attcgatgca acccatccca ttcagcttga cctgattttg ccgacgccag acgcgcatcg
     1681 ccgcagccta gcgccggcgc gtttttgtct cacccctttg ctattcgccg accatgcccg
     1741 gaacaactgt gacaaccgtg aagaaacctt tttataaagt cctgtatgtg caggtgctgt
     1801 tggcaattgc catcggcatt gcacttgggc atttctatcc tgcgcttgcc accgagatga
     1861 aaccgctcgg cgatgggttc atcaagctca tcaagatggt tatcggccca atcatcttct
     1921 gtacggtcgt gaccgggatt gccggcatgg aagacatgaa gaaggtcgga cgcgtgggcg
     1981 gcaaggcgct tctgtacttc gaagtcgtct cctctttcgc actcgttctc ggtctcgccg
     2041 cgacgcacat tctgaaaccg ggcgtgggct tcaatatcga tccggctacg ctggacgcca
     2101 aggcggtcgc ctcgtacgcc gcgaaggcgc atggccaaac gaccaccgat ttcctgatgc
     2161 acatcatccc ggacacgatc tcgtccgcgt tcgcgcaagg cgaaatcctg cagatcctgt
     2221 tggtcgcgct gctgttcggc gcggtgctgg ctaccgcagg tgagaagggc cgcgtggtga
     2281 cgagctttat cgaaggcttg tcgcacatcc tgttcggcat cgtgcgcatc atcacgaagc
     2341 tggccccgat cggcgcgttc ggcgcaatgg cgttcaccat cggcaagtac ggcatcggct
     2401 cgctggtgcc catgctcaag ctgatcggca cgttctatct gacatcgatc gtgttcgtgg
     2461 tcgtcgtgct cggcgcaatt gccaagatgg tgggcttcaa catcctgcgt ttcgtcgcgt
     2521 acatcaagga agaaatgctg atcgtgctcg gcacgagctc gtcggaagct gcattgccgc
     2581 aactgatgct caagctcgaa aagcttggtt gctcgcgttc ggtcgttggc ctcgtggtac
     2641 cgacaggtta ttcgttcaac ctcgacggca cgaacatcta catgacgatg gccgtgctgt
     2701 tcatcgccca ggccacgaac acggacctga cgtggacgca gcaactgacg ctgctcgcgg
     2761 tgaccatgct gacgtcgaag ggcgcaagcg gcgtgaccgg cgcagggttc atcacgctgg
     2821 ctgcaacgct cgctgtcgtg ccgaccattc cgctctcggg catggtgctg attcttggca
     2881 tcgaccgctt catgagcgag tgccgcgcgt tgacgaacat cgtgggtaac ggcgtggcga
     2941 ctgtggttgt gtcggcatgg gagaaggaac tggaccgcga caagctgcgc gatcagctca
     3001 agcacggcgc ggtggatacc gaagccgaaa ccgtgtcctg atcggtcgaa gcagcggctc
     3061 atccaggcgc gctgcttacc cggcattcac gcgaaaggga atcaacagca atgaaagcgg
     3121 cgaagcattc ggtggcggat gcttcgccgc gtccgtttac gggggtatcg gcgaaggcgt
     3181 cgacggaagc ctcgttcgaa accgcgttcg aagcggcgca tgccacaatc gggggtcccc
     3241 accgtctgga acccgttcaa gtgacgcggc gtttggtcgt tttcctgctt ctcctcgcgg
     3301 cacttgccgg cgtgtgcgcg ctcacgtgga gcatcgcgtg gcaacgtggg ctcgacacgt
     3361 tgcgtcaaaa cgcggcggcg cgtgtcgacc gcacgacggc cgagctgaaa agcacgctag
     3421 accgttacga atatctgcct tatctgctct cgcgccatcc gttcgtgcag gaagtcctcg
     3481 ccgatccgaa ccc
//
LOCUS       DATGBK010001218         1992 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_338440, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001218 DATGBK010000000
VERSION     DATGBK010001218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338440"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VKJ77_17000"
     CDS             <1..454
                     /locus_tag="VKJ77_17000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017522941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="catechol 1,2-dioxygenase"
                     /protein_id="HMC47022.1"
                     /translation="QADMNLRGKLTTDAEGHIAFRSVKPAGYPIPLSGPVGELLSAQG
                     RHNMRPAHIHFMIYKPGFKTQFSQVYSSDDPNLDTDVQFGVTRALVGQYVLHDSHTEP
                     APSGDIEGAWYSLDHHFKIEAGEAKLPKPPITGKAEGARPTLTVLART"
     gene            496..711
                     /locus_tag="VKJ77_17005"
     CDS             496..711
                     /locus_tag="VKJ77_17005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HMC47023.1"
                     /translation="MPIVQISLVEGRDDATVKACIKAVARTIHETLGAPLASIRVIAT
                     VVPATHWAVGDQTKDETAAAAREQEEK"
     gene            708..1511
                     /locus_tag="VKJ77_17010"
     CDS             708..1511
                     /locus_tag="VKJ77_17010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HMC47024.1"
                     /translation="MTPGLIEQAANALFDAARTGQFIAPLRETYEQLSIESAYAVQRF
                     NTERRLKEGHRLVGCKIGLTSVAVQKQLGVDRPDFGMLFDDMAYGDGEPIPASILTQP
                     KIEAEVAFVIGRDITVPNPGPLDVLNAIEYALPALEIVGSRIAKWDIRITDTIADNAS
                     SSAFVIGNSPRKLSEFDLRLCGMVIERRGEPVSVGAGAACLGNPINAVVWLARTMAGL
                     GTPLKAGDLVLSGALGPMVSVTPGDIFETRINGLGSVRAVFENDSGEAR"
     gene            1511..>1992
                     /locus_tag="VKJ77_17015"
     CDS             1511..>1992
                     /locus_tag="VKJ77_17015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006404104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate decarboxylase"
                     /protein_id="HMC47025.1"
                     /translation="MSNILDYATLLDDAARNANEVPQFDAEGRLSLDDAYAIQAASIE
                     RRVTRGEHRVGVKMGFTSRAKMVQMGLSDVIWGRLTAGMQIEEGTAVDFSRFVHPRVE
                     PEIAFVLKHPLSGNVTAPEALAAVEAIAPALEIIDSRYKDFKFTLPEVIADNASSSGF
                     V"
BASE COUNT          417 a          599 c          615 g          361 t
ORIGIN      
        1 gcaagccgac atgaacctgc gcggaaaatt gaccactgat gccgaaggac acatcgcctt
       61 tcgcagcgtc aaaccggcgg gttatccgat cccgttgtcc gggccagtgg gggaattgct
      121 gagtgctcaa gggcgtcaca acatgcggcc ggcgcatatc catttcatga tctataagcc
      181 gggtttcaag acgcaattct cgcaagtcta ttcaagcgac gaccccaatc tcgataccga
      241 tgtccagttc ggcgtcacac gcgcactggt ggggcagtac gtgctgcacg acagccacac
      301 cgagcctgca ccatcaggcg atatagaagg cgcgtggtat tcgctcgatc accacttcaa
      361 gattgaagcg ggcgaagcga agctgccgaa accaccgatc accgggaaag ccgaaggcgc
      421 gcgcccgacg ctcacggtgc tggcgagaac ctgacgacga aacacgccgg atcgatttaa
      481 accaaaggaa gaaccatgcc aatcgtacag atatcactcg ttgaaggacg cgacgatgcc
      541 accgtgaaag cgtgcatcaa ggcagtcgca cgcacgatcc acgaaacgct cggcgcgcct
      601 ctcgcatcca ttagagtcat tgcgacggtc gtgcctgcaa cgcattgggc cgtcggcgac
      661 cagaccaagg acgagaccgc tgcggcggcc cgggaacagg aggaaaaatg acacctgggc
      721 tcattgagca ggctgcgaac gcgttattcg atgccgcgcg caccggtcaa tttatcgcgc
      781 cgttgagaga gacttacgag caactcagca tcgaatccgc ctacgccgtg caacgcttca
      841 acaccgagcg tcggttgaag gaagggcacc ggttggtggg ttgcaagatc gggctgacat
      901 cggtcgcggt gcagaagcaa ctcggtgtgg atcgtcccga tttcggcatg ctcttcgacg
      961 acatggctta tggcgacggc gaaccgatcc ctgcatcgat cctcacgcaa ccgaagattg
     1021 aagccgaggt ggcgttcgtg attggccgag atattactgt gccgaatccc ggtccgctcg
     1081 atgtgctgaa cgcgatcgag tacgcgctgc ccgcgctcga aatcgtggga agccggattg
     1141 ccaagtggga tattcgcatt accgacacca ttgccgacaa cgcatcgtcg tcggcattcg
     1201 tgatcggcaa cagcccgcgc aagctctctg agttcgactt gcgtttgtgc ggcatggtga
     1261 tcgagcggcg cggcgagccg gtctcggtcg gtgcgggcgc ggcctgcctg ggtaatccaa
     1321 tcaacgcggt cgtctggctc gcgcgcacga tggccggctt aggcacgccg ctcaaggcag
     1381 gcgacctcgt gttgtccggt gcactcggtc caatggtctc ggtcacgccc ggcgacatct
     1441 tcgaaacccg catcaacgga ctcggttccg tgcgggctgt gtttgaaaac gactcgggcg
     1501 aggcacgctg atgagcaaca ttctcgacta cgcaacgctc ctcgacgacg ccgcgcgcaa
     1561 cgccaacgaa gttccccagt tcgacgcgga aggccgcttg tcgctcgacg acgcgtacgc
     1621 aattcaagcg gcatccattg aacgccgggt gacgcgcggc gagcatcgcg tcggcgtgaa
     1681 gatgggcttc acgagccgcg cgaagatggt ccagatgggg ctgtcggatg tgatctgggg
     1741 tcgcctgacg gcgggcatgc agattgaaga ggggaccgct gtcgacttct cgcgcttcgt
     1801 gcatccgcgc gtcgagccgg agatcgcgtt cgttctcaag cacccgcttt ccggcaatgt
     1861 caccgctccc gaagcgctcg cggcagtgga ggccattgcg ccggcgctgg agatcatcga
     1921 ttcgcgctac aaggacttca agttcacgct gccggaagtg attgcggaca acgcttcgtc
     1981 gagcggcttc gt
//
LOCUS       DATGBK010001219         1637 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245830, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001219 DATGBK010000000
VERSION     DATGBK010001219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245830"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..855
                     /gene="dxr"
                     /locus_tag="VKJ77_17020"
     CDS             <1..855
                     /gene="dxr"
                     /locus_tag="VKJ77_17020"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HMC47026.1"
                     /translation="GKRILLANKEALVMSGKIFIDAVHDNGAVLLPVDSEHNAVFQCM
                     PREVALHGGVSKIILTASGGPFRTREPSTLRHVTPDEACKHPNWAMGRKISVDSATMM
                     NKGLEVIEAHWLFNVPGSRIEVLIHPQSVIHSLVSYADGSVLAQLGNPDMRTPIAYAL
                     AFPERVDSGVAQLDLAQIASLTFEKPDLKRFPCLALALKALEAGGTASAALNAANEVA
                     VEAFLARRIGFMAIGEVVERVLNALPNGSASTLDEVLAADAEARRLAGEFAALLTADA
                     PHSERVLH"
     gene            863..>1637
                     /gene="rseP"
                     /locus_tag="VKJ77_17025"
     CDS             863..>1637
                     /gene="rseP"
                     /locus_tag="VKJ77_17025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018417653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HMC47027.1"
                     /translation="MNFLIEIVAFVVAIGVLVVVHEFGHYSVARLCGVKVLRFSVGFG
                     KPLVKWVSKRTGTEWTIAALPLGGYVKMLDEREAEASIPEADLPRAFNRQPVLKRIAI
                     VIAGPVANFILAILLFAGVFAGGVSEPAAILSAPAPNTVAAKAGFEGGETIVSMRDVQ
                     GDSDASGETHRVRSWSDLRWKLLDASFDHRRVVLTASTNHGTFDFPVSVGKIDDQDAD
                     QDFMDKLGFEPGGGTLAVAGVEAGSAAAKAGLQAGDVLRA"
BASE COUNT          281 a          500 c          551 g          305 t
ORIGIN      
        1 ggcaagcgca tcctgctggc caacaaggaa gcgctggtca tgtcgggcaa gattttcatc
       61 gacgctgtgc acgacaacgg cgcggtgctg ttgccggtcg atagcgagca caacgcggtg
      121 ttccagtgca tgccgcgtga agtggcgctg cacggcgggg tgtcgaagat catcctgacg
      181 gcatccggcg gcccgttccg cacccgcgag ccgtcgacgc tgcgccacgt cacgcccgac
      241 gaagcctgca aacatccgaa ctgggcgatg ggccgcaaga tttccgtcga ttccgccacc
      301 atgatgaaca agggcctcga agtgatcgag gcgcattggc tcttcaacgt gccgggctcg
      361 cgcattgaag tgctgatcca tccgcaaagc gtgattcatt cgctcgtttc atacgcggac
      421 ggttccgtac tcgcgcaact cggcaacccc gacatgcgca cgccgatagc ctatgcgctg
      481 gcgtttccgg agcgcgtgga ttcgggcgtc gcgcaacttg acctcgcaca aattgcttcg
      541 ctcaccttcg agaagcctga cctgaagcgt ttcccgtgcc tggcactcgc gctgaaggcg
      601 ctggaagccg gtggcaccgc aagcgcggcg ctcaacgcgg ccaacgaggt cgcggtagag
      661 gcgttccttg ctcgccgtat cggcttcatg gcgatcgggg aagtggtcga gcgcgtgttg
      721 aatgcgttgc cgaacggcag tgcatcgacg ctcgatgaag tgctcgccgc cgacgccgaa
      781 gcgcgtcgcc tggcaggcga gttcgccgct ttgctgacag ccgacgcgcc gcactccgaa
      841 cgcgtcctgc actgaggtcg ccatgaactt cctgattgaa atcgttgcgt tcgtggtggc
      901 tatcggcgtg ctggtcgtcg tccacgagtt cggccattac agcgtcgcgc ggttgtgcgg
      961 cgtgaaggtc ctgcgatttt cggtcgggtt cggcaagccg cttgtgaaat gggtcagcaa
     1021 gcgcaccggc acggagtgga cgatcgccgc gctgccgctg ggcggctacg tgaagatgct
     1081 cgacgaacgg gaagcggaag cgagcattcc cgaagccgat ctgccgcgcg ccttcaaccg
     1141 gcagccggtg ctcaagcgga tcgcgattgt catagccggt ccggtggcta acttcattct
     1201 cgccatcttg ctgttcgccg gcgtgttcgc gggcggcgtc tccgaaccgg ctgcgattct
     1261 ctcggcgcct gcgcccaaca ccgttgccgc gaaggcgggc ttcgagggtg gcgagacgat
     1321 cgtttcaatg cgcgatgtgc agggcgacag cgatgcgagc ggcgagacgc atagggtgcg
     1381 ctcgtggtcc gacctgcgct ggaaactgct cgacgcatca ttcgatcatc gccgcgtggt
     1441 gctcaccgcc agcacgaacc acggtacgtt cgatttcccg gtgagcgtgg gcaagatcga
     1501 cgaccaggac gccgatcagg atttcatgga taaactcggc ttcgagccgg gtggcggcac
     1561 gctggcggtg gccggtgtgg aagcgggcag cgcagcagcg aaagcgggct tgcaggcggg
     1621 tgacgtgctg cgtgcta
//
LOCUS       DATGBK010001220         1538 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_292500, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001220 DATGBK010000000
VERSION     DATGBK010001220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292500"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1528)
                     /locus_tag="VKJ77_17030"
     CDS             complement(<1..1528)
                     /locus_tag="VKJ77_17030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HMC47028.1"
                     /translation="MAAKLSRLPRLTQDALGQLACLGNVAEVTALTWVQGGSEETMHA
                     NLWEAVRTGLVLRVANAYEFAHDRVQEAAYALIPADERVAVHLRIGRALVSRTPPEAL
                     EDAIFDIVNHLNRGSALIATATERGQVVALNLIAGTRAMNSTAYAAARSYLELGVALL
                     SPDAWTQRYDSTFDLYLAFSECEYLAGDFAKADALADMMLARACSNLDRAKVFSLRIE
                     LYQLAGRYDESFAVALTALRDFGIIFPETDQDVHAAVDVALREAHANQAGRPIGELVE
                     APVATDPAIRAIVNLLLQAMNCAFAARPAFYPLITLRAVNLSLQHGNTDNSSFAYGNY
                     ALMLVSLIGDIPTAVQFSEMSIKLNEKFGNRRLVGKLLHLYGAHVNFWRCHIATNLPV
                     LERATTACLEVGDLVFAGNIAFNAVWQTIEKGAVLEDVQTLAEKYAALARESHNDAVY
                     ELIRVERQFVVSLRGKTTETLQLNDDTFDEAACFDAIIKSNFGCAIGVYRIIKVMLAF
                     L"
BASE COUNT          321 a          456 c          467 g          294 t
ORIGIN      
        1 caaggaaggc aagcatgacc ttgatgatgc gatagacacc gatagcgcag ccgaaatttg
       61 atttgatgat tgcgtcgaag caggctgctt cgtcgaacgt atcgtcgttc agctgcaacg
      121 tttcggtcgt cttgccccgg agactgacga cgaattgccg ctcgacccgg atcaactcat
      181 aaaccgcgtc gttgtggctc tcccgtgcga gcgcagcgta cttttccgct agcgtctgca
      241 cgtcctctag gaccgcaccc ttctcgatcg tctgccaaac cgcgttgaat gcgatgttgc
      301 ctgcaaaaac gaggtcgccc acttccaggc acgcagtggt cgcccgttcg agcaccggca
      361 gattagtcgc aatgtggcag cgccagaaat tgacatgggc gccgtacaga tgaagcagtt
      421 ttccaaccag gcgccgattg ccgaactttt cgttcagctt tatcgacatc tctgagaatt
      481 gcacagcggt agggatatcg ccgataaggg agaccagcat taacgcgtaa ttgccgtaag
      541 caaaactgga gttgtcggta ttgccgtgct gcaaggagag gttgaccgcc ctcagggtga
      601 tgagcgggta aaacgcgggg cgcgcggcaa aggcgcagtt catcgcctga aggagaaggt
      661 tgacgatcgc acggatcgca ggatccgtcg ctaccggcgc ctcgaccagt tcgccgatgg
      721 ggcgcccggc ctgattggca tgagcctccc gcaatgcgac gtcgacggcc gcgtggacgt
      781 cctgatcggt ctcaggaaag ataatgccga aatcgcgaag cgcagtgagc gcgactgcga
      841 agctctcgtc atatcttccg gcgagctgat acaactctat gcgcaggctg aagaccttcg
      901 cacgatccag attggagcac gctcgggcga gcatcatgtc ggccagcgcg tcggctttcg
      961 caaaatcgcc ggccagatat tcgcattccg agaacgcaag atagaggtcg aacgtgctgt
     1021 cgtagcgctg cgtccaggcg tcgggcgaca gcagcgctac gcccagctcc agatagctgc
     1081 gagcggccgc gtaggccgtc gaattcatcg cgcgcgtgcc tgcgatgagg ttcagcgcaa
     1141 caacttgccc acgttctgtc gcagtcgcga tcagcgccga gccacgattg agatggttga
     1201 cgatatcgaa gatggcatct tcaagcgctt ctggcggagt ccgcgacacc agcgcccggc
     1261 cgatccgtag atgaacggcg acacgctcgt cggcgggaat cagcgcataa gcggcctcct
     1321 gcacgcgatc gtgtgcgaat tcgtaggcgt tggccacgcg aagaacgagg cccgtgcgca
     1381 cggcttccca caggttcgcg tgcatcgtct cttcagatcc gccctgaacc caagtcagtg
     1441 cagtgacttc ggcgacgttg ccgaggcatg ccagctgccc caacgcgtct tgcgtcagac
     1501 gcggcaagcg gctgagcttc gcggccatca gatcggcg
//
LOCUS       DATGBK010001221         3040 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_269663, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001221 DATGBK010000000
VERSION     DATGBK010001221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269663"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..656)
                     /locus_tag="VKJ77_17035"
     CDS             complement(<1..656)
                     /locus_tag="VKJ77_17035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PCRF domain-containing protein"
                     /protein_id="HMC47029.1"
                     /translation="MKTSMQNKLDQLTTRLAELNDLMSREDVTADMDQYRKITRENAE
                     IGPVVEQYALWRQASNDETTAMELLSDPSMRDFAEEEIGEARERMVAIERDLQAMLLP
                     KDPNDDRNIFIEIRAGTGGDESALFAGDLLRMYLRYAERNRWAVEMMSESGSDLGGYK
                     EVIVRIAGLNVYSKLKFESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVVIN
                     P"
     gene            complement(756..2069)
                     /gene="hemA"
                     /locus_tag="VKJ77_17040"
     CDS             complement(756..2069)
                     /gene="hemA"
                     /locus_tag="VKJ77_17040"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HMC47030.1"
                     /translation="MQLLAIGINHHTAPVALRERVAFPLEQIKPALGALKDLWLGSLG
                     KTAPEAAILSTCNRTELYCATDDKAARDAAIHWLSKYHNLPVSELAPHVYALPQSEAV
                     RHAFRVASGLDSMVLGETQIVGQMKDAVRTASEAGALGTYLNQLFQRTFAVAKEVRTT
                     TEIGAQSVSMAAAAVRLAQRIFENISGQRVLFIGAGEMIELCATHFAAQKPRELVVAN
                     RTAERGEKLAERFNGRSIPLSDLPARMHEFDIIVSCTASTLPIIGLGAVERAVKARRH
                     RPIFMVDLAVPRDIEPEVGKLQDVFLYTVDDLGAIVREGSASRQAAVAQAESIIDTRV
                     QNFMQWLDARSIVPVIRHMHTQADALRRAEVERARKMLARGDDPAAVLEALSQSLTNK
                     LIHGPTHALNRASRENRDQLIDLMGGLYKHGHPSGSNEPSDPSET"
     gene            complement(2120..2869)
                     /locus_tag="VKJ77_17045"
     CDS             complement(2120..2869)
                     /locus_tag="VKJ77_17045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC47031.1"
                     /translation="MRIAIIDADVQHAALIRRTLVLDGHFCHFFPTAPVLLDRMRYDT
                     FDLLIAANETRDMIGAEIIERVRQLAPQLPIVLIAASQSESDMVACLKAGADDCVAKP
                     VRCTELAARVEVLARRSAVRTPAAEHFGEYRFNASELSVSFVDQRVLLTPKEFRFARL
                     LFTNLSRAVSRAHIMEVVWPRGSDMASRTLDTHASRLRTKLHLRPDNGYRLTPLYGYG
                     YQLDRIEADYVPGGLPGIGFPAGTEEIRERL"
BASE COUNT          566 a          935 c          937 g          602 t
ORIGIN      
        1 ggattgatca ccacttcgcc aatttcatcg gcttcgggca tgaccgcgac cgtgcaagcc
       61 gacgtgtgaa tgcgcccctg cgtttcggtc gccggcaccc gctgcacgcg atgccccccc
      121 gattcgaact tcagcttcga atacacgttc aggcccgcga tccgcacgat cacttcttta
      181 taaccaccga gatcggatcc gctttccgac atcatttcga ccgcccagcg attacgctcg
      241 gcgtatcgaa gatacatgcg caacaagtcg cccgcgaaca gcgcggattc gtcgccgccc
      301 gtgcccgccc ggatttcgat gaagatattg cggtcgtcgt tgggatcttt gggcagcaac
      361 atggcttgca gatcacgttc gatggcaacc atccgctcgc gcgcctcgcc aatttcttct
      421 tcggcgaaat cgcgcatgga cgggtcggag agcaattcca tagcggtggt ttcgtcgttc
      481 gacgcctgcc gccacaatgc gtattgctct acgaccggcc cgatttcggc gttttcccgc
      541 gtgatcttcc ggtactgatc catatcggcg gtcacatctt cgcggctcat caggtcattg
      601 agttcggcca gccgggtagt cagctggtcg agcttgtttt gcatgctcgt tttcatggaa
      661 ggctggagcg aagctccgga gaagacagcg atcaggaacg cgaccgcaaa gatgctcaca
      721 tgcggcgcaa ccgaagagga gacgaaagag gggcgctaag tttccgacgg atcggacggt
      781 tcgttcgatc ccgacggatg gccgtgcttg taaagcccgc ccatcaggtc gataagctgg
      841 tcgcgattct cgcggctggc acggttgagc gcgtgcgttg ggccgtggat cagcttgttg
      901 gtcagcgact gcgagagcgc ttcgagcacc gccgccgggt cgtcgccgcg cgccagcatc
      961 ttgcgggcgc gttcgacttc ggcgcggcgc agggcgtcgg cttgcgtgtg catgtggcgg
     1021 atcaccggca cgatgctgcg tgcatcgagc cattgcatga agttctgcac ccgcgtgtcg
     1081 ataatcgatt ccgcctgcgc caccgccgct tgccgggacg cgctgccttc gcgaacgatg
     1141 gcgccgaggt cgtcgacggt atagaggaat acgtcctgca gcttgcccac ttcgggttcg
     1201 atgtcgcgcg gcacggcgag atcgaccatg aagatcggcc gatggcggcg cgccttgacg
     1261 gcccgttcca ccgcgccaag cccgatgatc ggcaaggtgg atgccgtgca cgacacgatg
     1321 atgtcgaact cgtgcatacg cgcgggcagg tcggagagcg gaatggagcg gccgttgaag
     1381 cgttcggcaa gcttctcgcc gcgttccgca gtgcggttcg cgaccacgag ctcgcgcggc
     1441 ttttgcgcag caaaatgcgt cgcgcacaac tcgatcattt cacccgcgcc aatgaacagc
     1501 acgcgctggc ctgaaatgtt ttcgaagatg cgctgcgcga gacgcacggc cgcagcagcc
     1561 atggaaacag attgcgcccc aatttcagtt gtcgtgcgga cttccttcgc gacggcgaag
     1621 gtgcgctgga acaactggtt caggtacgtg ccgagcgcgc cggcttcgga cgccgtgcgc
     1681 actgcatcct tcatctggcc gacgatctgt gtctcgccaa gcaccatgga atcaagtccg
     1741 gaggcgactc gaaacgcatg ccgcaccgct tcggactgcg gcagcgcata gacgtgcggc
     1801 gcgagttcgg agaccggaag gttgtgatac ttggacagcc aatggatagc agcgtcgcgg
     1861 gcggctttgt cgtcggtggc gcaatacagc tccgtgcggt tgcacgtcga caggatcgcg
     1921 gcttccggcg cagttttccc cagcgacccc agccacagat ctttcagcgc gccaagcgct
     1981 ggtttgatct gttcgagcgg aaacgccacg cgttcgcgca aggcgacagg cgcagtgtgg
     2041 tggttgattc cgatcgcgag gagctgcatg ttgtgggcct atccgatggc cttggggaac
     2101 cttggaattt agcccgatat tatagccttt cgcggatttc ttcagttcca gccgggaaac
     2161 ctatgccagg caagccgcct ggaacgtagt ccgcttcaat ccggtccagt tggtaaccgt
     2221 agccgtacag cggcgtcaac cggtaaccgt tgtccggccg gagatgcaat ttcgtgcgca
     2281 ggcgggacgc gtgggtatcg agtgtccgcg acgccatgtc gctcccgcgc ggccacacca
     2341 cttccatgat gtgcgcacga gacacggcgc gcgacaggtt cgtgaacagc aaccgggcga
     2401 agcggaattc cttcggcgtg agcaaaaccc gctgatccac gaaactgacg ctcagctccg
     2461 acgcattgaa ccggtactcg ccgaaatgct cggcagcggg cgtacgaacc gcgcttcggc
     2521 gcgccagcac ttctacacgg gcagccagtt cggtgcagcg gacgggtttg gcgacgcaat
     2581 cgtcggcgcc cgctttcagg cacgcgacca tgtcggactc gctctggctc gcggctatca
     2641 acacgatggg aagctgcggc gccagttgcc tcacacgttc gatgatttcc gcgccgatca
     2701 tgtcgcgcgt ttcattggcg gcgatcagca agtcgaatgt gtcgtacctc atccgatcca
     2761 gcaacacggg cgccgttggg aagaaatggc agaaatggcc gtccaggacg agcgtccggc
     2821 ggatgagtgc ggcgtgctga acgtccgcgt cgataatggc gattcgcatg atttccgacg
     2881 cctccaagcg cgctgagagc tggccgggcg gcgcggcact tgcttgccat cgccattgca
     2941 gccccctaaa ctcattcgct acgctacaag cgccttccag accttctagg tttacagaat
     3001 cgaaaatgct agttcaccaa tccgattcaa cccataggtt
//
LOCUS       DATGBK010001222         3761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_14309, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001222 DATGBK010000000
VERSION     DATGBK010001222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14309"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..768
                     /locus_tag="VKJ77_17050"
     CDS             <1..768
                     /locus_tag="VKJ77_17050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006496830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47032.1"
                     /translation="KLSFGPVQHLLALALAAAAIAAILSSGLWSGLSVMREYANHADT
                     FWLEAARHVELVTGSVAAAVLIGVPLGVACAKWSALRAVTLPVLNIVQTIPSIAMYGL
                     MMVPLGLLAARFPLLNALGIRGIGVAPAGIALFLYSLLPVAASVVVGFTQLPRESVEA
                     AVAIGMTPRQRLFAIELPLALPVILTGVRIVLVQNIGLATVAALIGGGGFGTFVFQGL
                     GQAATDLVLLGAVPTIALGLAAAIVFNAVTELVKGRH"
     gene            781..1719
                     /locus_tag="VKJ77_17055"
     CDS             781..1719
                     /locus_tag="VKJ77_17055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010115358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47033.1"
                     /translation="MIEIENVSRRFGDIVAVDDVSLTIERGTITAFVGTSGSGKSTLL
                     RMINRLIAPTSGTIRIDGSDTATVPAEALRRGIGYVIQGNGLFPHWTVARNIATVPRL
                     LGWSTARIDQRVRELLTLFNLDADAYLDKYPHQLSGGQQQRVGVARALAAEPAILLMD
                     EPFGALDPIIRAKAQEDLLALQRRLGITVVIVTHDMEEALHLGDRIVVMDGGRVLQAA
                     TPAEILQRPAPGFVERLVAGVDRPFRLLSLIPVSEIAEAGAAEGSPIAGTQSLRDALS
                     ELLWRGAQSLPVASADGAVQSRISLASIVARAERSA"
     gene            1716..2471
                     /locus_tag="VKJ77_17060"
     CDS             1716..2471
                     /locus_tag="VKJ77_17060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47034.1"
                     /translation="MKSAAWIARIFALAVLLTLLFKPQVFQPMLAPLAENGAPALYDR
                     ASLLDLTLAHLAIVAGASLVGAVIALLAGIFVTREAGAEFLPLARSVVNIGQTFPPVV
                     VLALAVPVVGFGVKPTLVALILYGLLPIFESTITGLKEIPSATIDAARGMGMSATRQL
                     FSVELPLALPVILAGLRLSVVINLGTATIGSTVAAKGLGDVIIAGLQTSNTAFILQGG
                     VIVGLLAVLIYDAMGIAGRFASRHVVDAAASGA"
     gene            complement(2619..2801)
                     /locus_tag="VKJ77_17065"
     CDS             complement(2619..2801)
                     /locus_tag="VKJ77_17065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012733518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HMC47035.1"
                     /translation="MDKNRVEGAAKQVTGSVKEAIGKITGNKTTQAEGAAERVAGKVQ
                     SKVGKAADAVRNIFKK"
     gene            3321..3557
                     /locus_tag="VKJ77_17070"
     CDS             3321..3557
                     /locus_tag="VKJ77_17070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47036.1"
                     /translation="MLAVALSAASFAAQVQAAGCLKGAAVGGVAGHYVGSGHAVLGAV
                     GGCIVGHHMASKKAKEDALAREHAQQAATGPSGT"
BASE COUNT          634 a         1092 c         1200 g          835 t
ORIGIN      
        1 aagctctcgt tcggacctgt gcaacatctc ctcgcgcttg cactggctgc ggccgctatt
       61 gcagccattc tgagcagcgg actgtggagc gggctgtcgg tcatgcggga gtatgcgaat
      121 cacgccgata ccttctggct cgaagccgct cgccatgtcg agctcgtcac ggggtcggta
      181 gcggcggcag tcctgattgg cgtgccgctc ggcgtggcgt gtgcaaagtg gtccgcgctg
      241 cgtgccgtca cgttaccggt actcaacatt gtccagacca tcccgagtat cgcgatgtac
      301 ggtttgatga tggttccgct agggcttctt gccgctcgat tcccgctgct caatgcgctt
      361 ggcattcgcg gtatcggcgt tgcgcctgcg ggaattgcgt tgttcctcta ttcgctgctg
      421 ccggtcgcgg caagcgttgt ggtggggttt acgcagcttc cgcgcgagag tgttgaagct
      481 gcggtggcga taggaatgac cccgcgccag cggctctttg cgattgaact gccgcttgcg
      541 ttgcctgtca tcctgacggg cgtgcggatc gtgctggtcc agaacatcgg gctagcgacc
      601 gtggctgcgc tgatcggcgg gggcggcttt ggcaccttcg tattccaggg cctcgggcaa
      661 gcagcgactg atctcgtgct gcttggtgcc gtgccaacca tcgcgcttgg tctcgccgcg
      721 gcaatcgtgt tcaacgccgt gactgagctt gtcaaaggac gccattaagg gacgccacgt
      781 atgatcgaaa tcgaaaatgt cagcaggcgt ttcggcgata ttgtcgctgt cgacgacgtc
      841 tcgctcacca tcgaacgcgg caccatcacc gcgtttgtcg gcacgtcggg cagcggcaaa
      901 tctacgctcc tgcgcatgat caaccgcctg atcgcgccca cgagcggcac gatccgtatc
      961 gacggaagcg acaccgcaac tgtgccggcc gaggccttgc ggcgcgggat tggttatgtg
     1021 atccagggta acggcctgtt tccgcattgg acggtggcgc gcaatatcgc gacggttcca
     1081 cgcttgcttg ggtggagcac ggccaggatc gaccagcgtg ttcgcgagtt gctgacactc
     1141 ttcaatctcg acgccgatgc ctacctcgac aagtatcctc atcagctttc cggcggccag
     1201 cagcagcgtg tgggcgtggc gcgggcgctg gcggcggagc ctgcaatctt gctgatggac
     1261 gagccgttcg gcgcactcga tcccatcatt cgcgccaagg cgcaggaaga cttgctcgcg
     1321 cttcagcggc gtctgggcat cacggtcgtg attgttacgc acgacatgga agaggcgttg
     1381 catctgggcg accgtattgt ggtgatggac ggtggccgtg tgcttcaggc cgctacgccc
     1441 gccgagatct tgcagcggcc tgcgccgggc tttgtcgagc ggttggtagc gggcgtcgac
     1501 cggccgtttc ggctgctgtc gctgattcct gttagcgaaa ttgctgaagc cggcgccgcg
     1561 gagggtagcc ccatcgccgg tacgcagagc cttcgcgatg ccctgtccga gctgctttgg
     1621 cgtggcgcgc agagcttgcc ggttgcatcg gccgacggtg cagtgcagag ccggatttcg
     1681 cttgcttcta tcgtggcgcg tgctgagagg tccgcatgaa atcagccgcc tggatagcgc
     1741 gtatttttgc gcttgccgtg ctgctcacgc tgctgttcaa gccgcaggtg ttccagccga
     1801 tgcttgcacc gctcgctgaa aacggcgcgc cggccctgta tgaccgggcg agccttctgg
     1861 acctcacgct tgcgcatctc gcgatcgtgg ccggtgccag tctggtgggt gcggtcattg
     1921 cattgcttgc cggcattttc gtcacgcgcg aggcgggggc ggaattcctg ccgctcgcgc
     1981 gtagcgtggt gaatatcggg cagacgtttc cgccggtggt cgtgctggcg cttgcggtgc
     2041 ccgtggtcgg atttggtgtg aagcccaccc tggtcgcgtt gattctttac ggtctcctgc
     2101 cgatcttcga gagcaccatc acgggtctga aagagattcc gtccgcgact atcgatgcgg
     2161 ctcgaggcat gggcatgagc gcgacgcggc agttgttctc ggtcgaactg ccgctcgcgc
     2221 tgccggtgat tctcgcaggc ctgcgccttt cggtggtgat caatttgggg accgcgacca
     2281 tcgggtcgac cgtggctgcg aaggggctgg gcgatgtcat cattgccggc ctgcagacct
     2341 ccaatacggc gtttattctg cagggcggtg tgattgtcgg cttgcttgcc gtgctgatct
     2401 atgacgcgat gggcattgcc ggccggttcg cttcaaggca tgtggtggac gcggctgcga
     2461 gcggcgctta gggactggga cggtcagttg tgtcactcct cgcgacgacc gttagagcct
     2521 aaaacccgac acgcttcctg gcgacgagac tcgacagcca gagcccaagc aaaaaaaacc
     2581 gaccggtgcc ggtcggctta agcgcgccaa tcttcccgtt acttcttgaa tatgttgcgc
     2641 acggcgtcgg ctgctttacc caccttcgac tggaccttcc ccgcgactct ttcggcggcg
     2701 ccttcagctt gcgttgtctt gttgccggtg atcttgccga tcgcttcctt gacggagccg
     2761 gtcacttgct tggccgcacc ttcaacccga ttcttatcca tgacgttgtt cctttagaga
     2821 gctagcgttc tcaacgtgcc aaacgtacgt cgagaaacgt acgtcgagag atgatttgct
     2881 ccgcgtacct gcaccccgac ggacgcttta attgtgctca ttcacttcaa ttgcggacag
     2941 tcgcaaatgg attggtctgc ctgatgcatt tgaaatgccg ctgagcttgg tatcgcgtgg
     3001 aaagccgaca aaacaaccaa aacctgccaa gcgtgtgaat caggacgcat aattcgttcc
     3061 caatacgggt tctgccacgc gtcgacgcgg ttggttgggc ttgaaatgcg tgtttgtcga
     3121 ccccattgat cagcgtggcg cagggatgga gcatttgcat cccacgtgtc atgcgcgtta
     3181 agtgttcgtc ctgatgcatg gcgctaacgg cgagcttaca aagttgcttg actaagaacc
     3241 cgggcgtccc ttaatggcct caaggacctt atggaccgcc ctgataaaga atgaggtatt
     3301 caatgaaagt gaaatttgca atgctcgccg tcgcgctctc agcagcgagc ttcgctgctc
     3361 aggttcaggc tgccggatgc ctgaagggcg ctgccgtggg cggcgtggct ggtcactatg
     3421 tcggcagcgg ccatgcagtg ttgggcgcag tcggagggtg catcgtgggt caccacatgg
     3481 cgagtaagaa agccaaggaa gacgcgttgg cacgcgagca cgctcagcaa gcggctaccg
     3541 gtccatcagg cacctaagca gcgctaaggc acgcaagggc atgcatcaag cgccctaagc
     3601 atcgttacgc ttgctccatc caaaagcgaa aatggtgctt agcggtgttg aactgcatac
     3661 cgacgcgcag agttgtccag gcataggcag gtcaaagaca taccagggct cgcccctgga
     3721 cacgctggcc aaagccgggg cgggttcgcc tggcgcaagg t
//
LOCUS       DATGBK010001223         3734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_130073, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001223 DATGBK010000000
VERSION     DATGBK010001223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130073"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1407)
                     /locus_tag="VKJ77_17075"
     CDS             complement(<1..1407)
                     /locus_tag="VKJ77_17075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014971815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional cobalt-precorrin 5A
                     hydrolase/precorrin-3B C(17)-methyltransferase"
                     /protein_id="HMC47037.1"
                     /translation="MASVTALNDPVPVAIVVLGMGAIDTARRIQARYPGSLVHGLASR
                     VQGDVAFTELGAHLRELYARNTPIVALCAAGIVIRCLASVLGGKTYEPPVLAVAEDGS
                     AVVPLLGGLGGVNVMAREIAAALDVAAAITTSGELRFGTCLLNPPAGYVLADIEHGKR
                     FVSDLLAGATTRVEGHAPWLDAANLPRAADAGLAIRITPHTSEVVGELMIHPRCAVVF
                     ITELASEDSIVERVRQTLREHRLSTMSLAAVLAPFSMMTSAPLAEAARTLDVPLRFGT
                     LPAGLETFESSDDGIVIALAPQPVDPSTLGQARGTVTVIGLGPGSADLMVPAARQALT
                     QADDVLGYETYVRMAGPFAPHQVLHCTDNREEMQRARHAFELASTGRNVVVVSSGDPG
                     VFAMAAAVLEALDQARDHEQWNAVELQVVPGVSAALATAARAGAPLGHDFCMLSLSDN
                     LKPWAVIETRLRHAAQADL"
     gene            complement(1395..2120)
                     /locus_tag="VKJ77_17080"
     CDS             complement(1395..2120)
                     /locus_tag="VKJ77_17080"
                     /EC_number="2.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030788 - precorrin-2
                     C20-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-2 C(20)-methyltransferase"
                     /protein_id="HMC47038.1"
                     /translation="MSGRLYGLGVGPGDPELITLKALRLLTSAQVVAYFVAKGKKGNA
                     FGIIEGHLKETQTRLPLVYPVTTEALEPPLCYETIIGEFYDESAIRIADHLEAGRDVA
                     VICEGDPFFYGSYMYLHDRLAERFEAHVVPGVCSMLGGVAVLGVPLVYRNQSLSVLSG
                     VLPEADLKQRLATADAAVIMKLGRNFDKVRRVLTELGLDKRALYVERATMANQRIVPL
                     EEVDPMASPYFSLLVVPGEKWQA"
     gene            complement(2121..2747)
                     /locus_tag="VKJ77_17085"
     CDS             complement(2121..2747)
                     /locus_tag="VKJ77_17085"
                     /EC_number="5.4.99.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017778279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016993 - precorrin-8X methylmutase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HMC47039.1"
                     /translation="MLDYIRDGQAIYRASFATIRAEADLSAVPADLEKLAVRVIHACG
                     MTDVIDDLVFSPGAGTAGRLALSRGAPILCDARMVAEGITRARLPADNRVICTLNDPS
                     VPERARALGNTRSAAALELWQPDLEGSIVVIGNAPTALFHLLDMLDAGAPKPALILGF
                     PVGFIGAAESKALLAANSRGVPFVALRGRRGGSAMAAAAVNALATETE"
     gene            complement(2740..>3734)
                     /gene="cobG"
                     /locus_tag="VKJ77_17090"
     CDS             complement(2740..>3734)
                     /gene="cobG"
                     /locus_tag="VKJ77_17090"
                     /EC_number="1.14.13.83"
                     /inference="COORDINATES: protein motif:HMM:TIGR02435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_process: GO:0019250 - aerobic cobalamin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="precorrin-3B synthase"
                     /protein_id="HMC47040.1"
                     /translation="RNVMSSPLAGLDSLALLDVAPLVSTLIWQMQRDARLHQLSPKFA
                     LMVDGGERLAMLDHPHDVWLSAISAERFVFGLAGCPPRFENDAPALAAVKTGHVPALV
                     DALLHTFLDLAQPWQTRMRDLLTTCSIEEILGRVQEKLGFALDRDVEDWRRPASDARL
                     RFGVHRQGTSDRVCVGAQVPLGRLDAATLSALADLAPRLRMTPWQSVMLLDVPSADAQ
                     AVMEQLASLGLATNPDEPFARLIACTGSQGCAKSFADTKADAHLLARSMPPTGDVHLS
                     GCARSCAAAHRVETTLIAVAPGHYDLYGEAPEPLARHLTIEQAARWLARSPSDA"
BASE COUNT          745 a         1177 c         1175 g          637 t
ORIGIN      
        1 gagatcggct tgagccgcgt gccgcaagcg cgtttctatc acagcccacg gcttgagatt
       61 gtccgaaagc gacagcatgc agaagtcgtg gccgagcggc gcgccggccc gggcagccgt
      121 ggcgagcgct gcggatacac ccggcacgac ctgcaattcc accgcgttcc actgctcgtg
      181 atcgcgggcc tgatcgagcg cttcgaggac agcagcggcc atcgcaaaga ccccgggatc
      241 tcccgacgat acgaccacta cgttgcgtcc cgtacttgcc agttcgaatg catggcgcgc
      301 acgctgcatc tcttcgcggt tgtcagtgca atgaagtact tgatgcggcg cgaacggacc
      361 ggccatacgc acataggtct cgtaaccgag cacatcgtcg gcttgcgtta aagcctgtct
      421 tgctgcgggc accatcagat ccgcgctgcc ggggccaaga ccaatcacgg tcactgtgcc
      481 gcgtgcttgc ccgagcgttg agggatcgac gggttgtggc gcgagggcaa tcacgatgcc
      541 gtcgtcgcta gactcaaacg tttccaagcc agcaggaagc gttccgaagc gcagcggcac
      601 atccaacgtc cgtgcggcct ctgcaagggg tgcagacgtc atcatgctga acggcgcgag
      661 cactgccgcc agcgacatcg ttgaaaggcg atgttcacgc aacgtttgac gcacacgttc
      721 gacgatcgag tcctccgaag ccaactccgt gatgaacacg accgcgcagc gcggatgaat
      781 catcaactcg cccacaacct cgctcgtatg cggcgtgatg cggatcgcca ggcccgcgtc
      841 ggcggctcgc ggcaggttag ctgcgtcgag ccacggcgca tgaccttcaa cgcgcgtcgt
      901 ggcgcccgcg agcaggtccg acacaaaacg cttgccgtgc tcgatatcgg caagcacata
      961 acccgctggc gggttcagca ggcaagtgcc gaaacgcaat tctccgctgg tggtgatcgc
     1021 cgctgcgacg tccagcgccg ccgcgatttc gcgggccatc acgttcactc cgcccagacc
     1081 gccaagcaaa ggcacgaccg cactgccgtc ctcggccacg gccagcacag gcggttcata
     1141 ggtcttaccg ccaagcacgg acgcgaggca acgaatcacg atacccgctg cgcataacgc
     1201 gacgatcggc gtgttgcgtg catagagttc gcgcagatgt gcaccaagtt cagtgaacgc
     1261 gacatcgccc tgcacgcggc tcgcgagacc atgaacaagc gatccgggat atcgcgcctg
     1321 aatgcggcgc gcggtgtcga ttgcccccat ccccagcacc acgattgcca cagggaccgg
     1381 atcgttcaac gctgtcacgc ttgccatttt tcccccggca cgacgagcag cgagaagtag
     1441 ggcgatgcca tggggtcgac ctcttccagc ggcacgatgc gctggttcgc catggtcgcg
     1501 cgctcgacgt aaagcgcacg tttgtcgagt ccgagttcgg tgagcacgcg ccgaaccttg
     1561 tcgaagttgc ggcctagttt catgatcacg gcggcgtcgg cggtggcgag acgttgcttg
     1621 agatctgctt ccggcagcac gcccgataac accgacaaac tctggttccg gtacacgagc
     1681 ggcacgccaa gcacggccac gccgccaagc atggaacaca cgcccgggac cacgtgtgct
     1741 tcgaagcgtt cggccagccg gtcatgcaga tacatgtagg agccgtagaa gaagggatcg
     1801 ccctcgcaga tcacggccac atcgcggccc gcttccagat gatccgcgat acggatggcg
     1861 gattcatcgt agaactcgcc gatgatcgtt tcatagcaga gcggcggctc gagcgcttca
     1921 gtcgtgactg gatacaccag cggtaaacgc gtttgcgttt cttttagatg cccttcgata
     1981 atgccgaacg cattgccttt cttgcccttg gcaacaaagt aagcgacgac ctgcgcggag
     2041 gtcagcaaac gcagcgcctt taacgttatc agctcggggt cgccaggacc gacaccgagg
     2101 ccatagaggc gtccgctcat ctattcggtc tccgttgcca gtgcgttcac ggcagccgcc
     2161 gccatcgcgc tgccgccgcg ccggccgcgc aacgcgacga atggcacgcc gcggctattg
     2221 gcggcaagca gcgccttcga ctccgccgcg ccgataaaac ccactggaaa gcccaggatc
     2281 aacgcaggtt tgggcgcgcc cgcgtcgagc atgtcgagca gatggaacag cgcggtgggc
     2341 gcattgccga tgaccactat gctgccttca agatccggtt gccacaattc gagcgccgcg
     2401 gccgagcgcg tattgccaag cgcacgagcg cgttcaggca cggatggatc gttgagcgtg
     2461 cagatcacgc ggttgtccgc cggcagcctc gcacgcgtga tgccctcggc gaccatgcgt
     2521 gcatcgcaga gaatgggggc gcctcggcta agcgccaggc ggcctgccgt gcccgcgccg
     2581 ggcgagaaca cgaggtcatc gattacgtcc gtcatgccgc atgcgtggat cacgcgcacg
     2641 gcaagtttct cgagatcggc gggaacggcc gagaggtcgg cctcggcgcg aatggtcgca
     2701 aacgacgcgc gatagatcgc ctggccgtcg cgaatgtagt caagcatcag aggggctccg
     2761 ggctagccat cgggctgcct gttctatggt gagatggcgg gcgaggggtt caggtgcctc
     2821 gccatagaga tcgtagtgac cgggagcgac agcaatcagt gtggtctcga cgcggtgtgc
     2881 cgccgcgcat gagcgcgcgc agccactaag gtggacgtcg cctgttggcg gcatcgaccg
     2941 ggcgagaagg tgcgcgtcgg ctttggtatc ggcgaaactt tttgcgcagc cttgtgaacc
     3001 tgtacacgcg atcaggcgcg cgaacggttc gtcggggttt gtcgcgaggc cgagtgaggc
     3061 gagttgttcc atgaccgctt gggcatcggc agacggcacg tcgagcagca tgacgctttg
     3121 ccagggcgtc atgcgtagcc gtggcgcgag atcggcgagc gcggacagtg tcgcggcatc
     3181 caggcgccca agcgggactt gcgcaccgac gcacacgcgg tcgctcgtgc cttgacgatg
     3241 cacgccgaaa cgtagccttg catcggatgc gggacgacgc cagtcttcaa cgtcacgatc
     3301 caaagcgaat ccaagcttct cctgaacacg gccaagaatt tcttcgatgg aacacgtcgt
     3361 cagcagatcg cgcattctgg tctgccaggg ctgcgcgaga tcgaggaagg tgtgcagcag
     3421 cgcatcgacc agcgcgggga cgtgcccggt tttcaccgca gccaacgcag gtgcatcgtt
     3481 ttcaaatcgc ggtggacacc cagcgagccc aaacacaaac cgttccgctg atatcgctga
     3541 aagccacaca tcgtgaggat gatcgagcat ggcgaggcgc tcgccaccat ccaccatcaa
     3601 cgcaaatttt ggcgataact gatgcaaacg tgcgtcgcgc tgcatctgcc agattaacgt
     3661 ggaaacgagc ggtgcgacat cgagcaaggc gagcgaatcg agacccgcca gcggactgga
     3721 catgacgtta cgct
//
LOCUS       DATGBK010001224         1818 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176508, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001224 DATGBK010000000
VERSION     DATGBK010001224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176508"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..90)
                     /locus_tag="VKJ77_17095"
     CDS             complement(<1..90)
                     /locus_tag="VKJ77_17095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019703295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase"
                     /protein_id="HMC47041.1"
                     /translation="MAFTLDDKLVVAISSRALFDFEEENEVYEA"
     gene            complement(98..1621)
                     /gene="ilvA"
                     /locus_tag="VKJ77_17100"
     CDS             complement(98..1621)
                     /gene="ilvA"
                     /locus_tag="VKJ77_17100"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - L-threonine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HMC47042.1"
                     /translation="MTHPDYLKKVLTARVYDVARESELEPARNLSARLHNSVYLKRED
                     NQPVFSFKIRGAYNKMVQLSADVLARGVITASAGNHAQGVAYSATRLGCKAVIVVPVT
                     TPQVKIDAMRAFGGPTVEIVQHGESYSDAYGHAVKLQEARGLTFVHPFDDPDVIAGQG
                     TVAMEILRQHQGPIYAIFVPIGGGGLAAGVAAYVKAVRPEIRVIGVQAIDSCAMKQSI
                     EAGERVTLTEVGLFADGTAVKLVGEETFRLCRELLDEVITVDTDALCAAIKDVFQDTR
                     SVLEPSGALAVAGAKLYAERDGLEAQTLVAVTSGANMNFDRMRFVAERAEVGEAREAV
                     FAVTIPEERGSFKRFCELVGTRSVTEFNYRIADAHAAHIFVGVQIKTRGEAVQMANAF
                     IEHGFATVDLSHDELSKQHIRYMVGGHSPLAQDERLLRFEFPERPGALMKFLSSMAPN
                     WNISLFHYRNQGADTSSILVGVQVPASENVEFGQFLATLGYQWWDEGANPVYKLFLA"
BASE COUNT          341 a          581 c          547 g          349 t
ORIGIN      
        1 cgcttcgtag acttcgtttt cttcttcgaa gtcaaagagc gcccgcgacg aaatcgcgac
       61 caccagcttg tcgtccagcg tgaacgccat gcgcgcgtca ggccaggaac agcttgtaga
      121 cggggttcgc gccttcgtcc caccactgat aacccaaggt ggcaaggaat tggccgaact
      181 caacgttctc cgatgccggc acttgaacgc caacgagaat cgagctggta tccgcaccct
      241 ggttccggta gtggaacagg ctgatattcc agttcggcgc catcgacgaa aggaatttca
      301 tcagcgcgcc cgggcgctcc ggaaactcga aacgcagcag ccgttcgtct tgcgcgagcg
      361 gcgaatggcc gcccaccatg tagcggatat gctgcttcga caactcgtcg tggctgagat
      421 cgaccgtagc aaatccgtgt tcgataaacg cgttcgccat ctgcaccgct tcgccgcgcg
      481 tcttgatctg cacgccgacg aagatatggg cggcatgggc atccgcaatc cggtagttga
      541 actcggtcac gctacgcgta ccgaccagtt cgcaaaaccg cttgaaacta ccgcgttctt
      601 ccggaatggt caccgcgaac accgcttcgc gcgcttcgcc gacttcagcg cgttcggcga
      661 caaagcgcat ccggtcgaag ttcatgttcg cgccggacgt cacggcgacc agcgtctgcg
      721 cttccagccc atcgcgctct gcgtatagct tcgcacccgc aaccgccagc gctcccgacg
      781 gttccagcac gctgcgcgtg tcctggaaga cgtccttgat cgcggcgcag agggcgtcgg
      841 tgtcgacggt aatgacttcg tcgagcaact cgcggcacag ccggaacgtt tcctcgccga
      901 cgagttttac cgccgtgcca tcggcgaaca gcccgacttc ggtcagcgtg acgcgctcgc
      961 ccgcttcgat ggattgcttc atcgcgcacg agtcgatggc ttgcacgcca atgacgcgga
     1021 tctccgggcg caccgctttg acgtacgccg cgacgcccgc cgcaagcccg ccaccgccga
     1081 tcggcacgaa gatggcgtag atcgggcctt gatgctggcg caggatttcc atcgcgacgg
     1141 tgccttggcc ggcgatgacg tcggggtcat cgaaaggatg aacgaaggtc aggccccgcg
     1201 cttcctgcaa cttgacggcg tggccgtacg cgtcgctata ggattcgccg tgctggacga
     1261 tctccacggt cgggccgccg aacgcgcgca tggcgtcgat cttgacctgg ggcgtagtga
     1321 ccggcacgac gatgacggct ttgcagccga gccgcgtggc tgaatacgcg acgccctgag
     1381 catgatttcc cgccgacgcc gtaatcacgc cgcgcgccag cacgtcagcg gaaagctgca
     1441 ccatcttgtt gtacgcgccg cgaatcttga acgagaacac cggctgattg tcttcgcgct
     1501 tcaggtagac cgagttgtgc agccgcgcgg acaaattgcg cgcgggttcg agctcgcttt
     1561 cgcgggcgac atcgtagacg cgcgcggtca ggactttctt gaggtaatcg gggtgtgtca
     1621 ttccggagcc gttcgcgcgc ggctgtgcgc gccatttttg agagcgaaaa catcaataat
     1681 agctcagggg atcgccgacg ctgcggttcg ggtcgctttg gtgcgcaatc gggcccagcc
     1741 cgactgtgtc aactaacggg ctccgcctgc atgaaatgcc gccaacaagt atcaaaaatt
     1801 gtctcgattg agcctgcc
//
LOCUS       DATGBK010001225         2118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_200058, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001225 DATGBK010000000
VERSION     DATGBK010001225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200058"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..960
                     /locus_tag="VKJ77_17105"
     CDS             <1..960
                     /locus_tag="VKJ77_17105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HMC47043.1"
                     /translation="APQLPGKIKAMQAAGRSDIDLVLTGTDALAAGIEQKLWMKLLPD
                     QAAAFPGVLDKYAPGPRKMQDLAQGYGIEVTYMPAGPLIEYNPAKVTDPPKTPAQLLA
                     WCKAHPDKLIYARPANSGPGRTFLMGLPYVLGDKNPQDPINGWDKTWAFLKQLNDCIP
                     YYPGGTSAVMKELGEGSRDMTVTVTGWDINPRALGLVPAEYKVQAFDNMTWVNDAHYM
                     VIPNGVPKEKLDVLYKMMNFMLEPAQQAMTFDDGYFYPGPAVKGVTIESAPAKSQEVI
                     QKYGRPEYAKLLAERPHVVPLSATAMVAAFQKWDREIGSQKSK"
     gene            1077..>2118
                     /locus_tag="VKJ77_17110"
     CDS             1077..>2118
                     /locus_tag="VKJ77_17110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47044.1"
                     /translation="MKHQFDELRLDSVSRSFMNAEGQAVAALRGLALNIQRGEFIALL
                     GPSGCGKSTALNCIAGLQPLTGGQIWLDDQRIDVLPPEKRGFGMVFQNYALFPHMSVL
                     DNVGFGLKMRGIAKSEAARRAYEALQMVQLIGQEKKLPGQLSGGQQQRVAIARAIVIE
                     PSLVLMDEPLSNLDTKLRIEMRAEIRRIHSQLGRATIYVTHDQDEALSMADRIVVMRE
                     GTVQQVASPKEIYERPGNLHVARFLGYRNVAQFTLEGMQGEGVAVSADGVRLIGMPMA
                     GFDSKRVSVAMRPEDLERAAPGSENAFDAEVLTVEYGGHDSLIRVKAAFGNLWARVTG
                     DVAVGERICLRVP"
BASE COUNT          432 a          615 c          679 g          392 t
ORIGIN      
        1 gcgccgcaat tgcccggcaa gatcaaggcg atgcaggctg ccggccgctc ggatatcgac
       61 ctcgtgctga ctggcacgga cgcgcttgcc gcgggtatcg aacaaaagct ctggatgaaa
      121 ctgctgccgg atcaggccgc ggcattcccc ggcgtactcg ataaatacgc gcccggtccg
      181 cgcaagatgc aggacctggc gcaaggctat ggcattgaag tgacgtacat gcccgcgggt
      241 ccgctgatcg aatacaaccc ggccaaggtg accgatccgc cgaagacgcc tgcccaactg
      301 ctcgcgtggt gcaaggcgca tccggacaag ctgatctatg cacgcccggc taattccggt
      361 cccggccgca ccttcctgat gggcttgccg tatgtgctcg gcgataaaaa tccgcaagac
      421 ccgatcaacg gctgggacaa gacctgggcg ttcctcaagc aactgaacga ttgcattccg
      481 tattacccgg gcggtacgtc ggcggtgatg aaggaactcg gcgaaggctc gcgcgacatg
      541 acagtgaccg tgaccggctg ggacatcaac ccgcgcgcgc tcggtttggt gccggccgaa
      601 tacaaggtcc aggccttcga caacatgaca tgggtcaacg acgcccatta catggtgatc
      661 ccgaacggcg tgccgaagga aaagctcgac gtgctctaca agatgatgaa cttcatgctt
      721 gaacccgcac agcaggcaat gaccttcgac gacggttatt tctatccggg tccggcagtg
      781 aagggcgtga ctatcgagtc ggccccggcg aagagccagg aagtcatcca gaagtatggc
      841 cggccggaat acgcgaagct gttggccgag cgtccgcatg tggtgccgct gagcgccacc
      901 gcaatggtcg ccgcgttcca gaagtgggac cgcgagatcg ggtcgcagaa gtcgaagtag
      961 ttttagcaat cgaagtaacg aatgtgtttt aacggccgtg cggcggcttg acgatcgctt
     1021 gaagcgatta agtcaagcgc gtcgcacggt gtcgttctta gcctcaggaa cctgccatga
     1081 agcatcagtt tgatgagttg cgtcttgatt cggtcagccg cagtttcatg aacgccgaag
     1141 gtcaggcggt cgcggccctc cgtggtcttg ccttgaacat ccagcgcggc gagttcatcg
     1201 cgttgctcgg gccgtccgga tgcggcaagt cgacggcgct caattgcatc gccggcttgc
     1261 aaccgctgac cggcggacag atctggctcg acgaccagcg tatcgacgtc ctgccgccgg
     1321 aaaaacgcgg cttcggcatg gtgttccaga actacgcgct gttcccgcat atgtccgtgc
     1381 tcgacaacgt cggtttcggc ctcaagatgc gcggcattgc aaagagcgaa gccgcccgtc
     1441 gcgcgtatga agcgctgcag atggtgcagc tcattggtca ggagaagaag ctgccggggc
     1501 aattgtccgg cggccagcag cagcgcgttg ctatcgcccg cgcgatcgtg atcgaaccgt
     1561 cgctcgtgct gatggacgaa ccgctgtcga atctcgatac caagctgcgc attgaaatgc
     1621 gtgccgagat ccggcgcatt cacagccagc tcggacgcgc gacgatctac gtgacgcacg
     1681 accaggacga agcgctctcg atggccgacc gcattgtcgt gatgcgggaa ggcaccgtgc
     1741 agcaggtcgc gtcgcctaag gaaatctatg aacggcccgg caacttgcat gtcgcgcgct
     1801 ttttggggta tcggaacgtg gctcaattta cgctcgaagg catgcagggc gaaggggtgg
     1861 ccgtgagcgc ggacggtgtg cggttgatcg gcatgccaat ggccggcttc gacagcaagc
     1921 gcgtgagtgt cgccatgcgt cccgaagacc tggaacgcgc tgcgcccggt tcagaaaatg
     1981 cgttcgatgc agaagtactg accgttgaat acggcggcca cgattcgctg atccgcgtga
     2041 aggccgcgtt cggcaatctg tgggcacgcg ttacgggtga cgtggcagtg ggtgaacgaa
     2101 tttgcctgcg ggtgccgc
//
LOCUS       DATGBK010001226         1774 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245867, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001226 DATGBK010000000
VERSION     DATGBK010001226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245867"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /gene="ribB"
                     /locus_tag="VKJ77_17115"
     CDS             <1..573
                     /gene="ribB"
                     /locus_tag="VKJ77_17115"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HMC47045.1"
                     /translation="DDDRENEADLIYAAEKLDVEGMALMIRECSGIVCLCLPDETVRA
                     LHLPPMVADNGSKYGTAFTVSIEAREGVTTGVSAVDRLTTIRAAIADNVKASDIVSPG
                     HVFPLRAQPGGVLTRRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMARGAQIDAFVK
                     ERNIPVLTIAELADFRMALAAARELAEETV"
     gene            complement(858..>1774)
                     /locus_tag="VKJ77_17120"
     CDS             complement(858..>1774)
                     /locus_tag="VKJ77_17120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47046.1"
                     /translation="ASAAYRFITLFDRGFMEDITLRQCLTGAWRDAASAVRHMPIVFL
                     VAFVAVLATGTAGYKAQFPGFEASGGSLTAMATSSAGHATGFAQGLISLGITFVQTLI
                     LAVLAVFVVRFAMKLSLEPAEASATSAPVLPATHLWDAGIRRYFLLCIVLVAGYVGAA
                     LAVMIVWIGLRLAGLSSGTSMAATATLAILVVCGVSYVSARLSLLFPHTATGGRIQWR
                     AAWEDTRGHFWFISTAAVLAILPIVGIATVLTVIAEMLATTGSIGSLTMGLMVVQSVG
                     TLLYTATGATCSVWLYRKFAAILTAEVK"
BASE COUNT          403 a          560 c          529 g          282 t
ORIGIN      
        1 gacgacgatc gcgagaacga agccgacctc atttacgccg ctgaaaagct cgacgtcgaa
       61 ggcatggcgc tgatgatccg cgagtgcagc ggcattgtgt gcctgtgcct tcctgacgag
      121 accgtccgcg cgctccactt gccgccgatg gtcgccgaca acggcagcaa atacggtacc
      181 gcgttcacgg tctctatcga agcacgcgag ggcgtgacga cgggggtatc ggcagttgat
      241 cggctgacca cgatccgcgc cgccattgcc gacaacgtca aagccagcga tatcgtgagt
      301 ccgggccatg tgttcccgct gcgcgcgcag ccgggcggtg tgctgacccg gcgcggtcat
      361 acggaaggaa ccgtcgatct ggcgatcctc gccgggttga agccggccgg cgtgctgtgc
      421 gaactgatga acccggatgg cacgatggca cgcggtgcgc agatcgatgc atttgttaag
      481 gagcgcaaca ttccggtgct cactatcgcc gaactcgccg atttccgcat ggcgctcgcc
      541 gctgcgcgcg aactggcaga agaaacggtt taacggcggt aggctccgtt atacggagta
      601 tcgagagcaa ttaaaaacgc ggccctgaac taacgggccg cgtttttcgt ttgggcatcg
      661 gaggaaagct gagaacagct gcatccggca aaagagcaat tcaaccaccg ccgccgcgcc
      721 ggttaacgcg tttcaaaccg ctcgaatgca agcgtggaag gggatatgac agccacgctc
      781 aatctcgcct tagccacgaa cagcaaaccg tgaacattct ccgctgccaa tgaaaaacaa
      841 acaccgccaa cacaaaatca cttaacttcc gccgtcaaaa tcgccgcgaa cttcctgtac
      901 agccagaccg agcaggttgc ccccgttgcc gtataaagca gcgtgcccac gctttgcacg
      961 accatcaaac ccatggtcag gctgccgatg gaccctgtcg tcgccagcat ttccgcgatc
     1021 accgtcagca ccgtcgcaat tcccacgata ggcaggatcg cgagcacggc ggccgtcgag
     1081 ataaaccaga aatgtccgcg cgtgtcctcc caggcggcgc gccattgaat ccggccgcca
     1141 gtcgcggtgt gcggaaacag caaggagagc cgcgccgaca cataactcac gccgcagacg
     1201 accagaatcg cgagcgtggc agtcgccgcc atagacgtgc cgctggacaa tcccgccagc
     1261 cgcaacccga tccacacgat catgaccgcg agggccgccc ccacgtaacc ggcaaccagc
     1321 acgatgcaga gcaagaaata gcgcctgata ccggcgtccc agaggtgcgt cgcaggaagt
     1381 accggcgcgg acgtggcgga agcttcggca ggctctaggc tgagtttcat cgcaaagcgg
     1441 accacgaaca cggccagtac cgcgagtatc aatgtctgta caaacgtgat gccaagagat
     1501 atcagcccct gagcgaatcc ggtcgcgtga ccggcgctgc tggtggccat cgcagtcagc
     1561 gaaccgcccg atgcctcgaa cccgggaaat tgcgccttgt agccagcggt tccggtcgcg
     1621 agcacggcga cgaacgccac tagaaatacg atcggcatgt gccgtacggc ggaggcggcg
     1681 tcgcgccatg cgcccgtcag gcattggcgc agcgtgatgt cttccataaa acctcggtcg
     1741 aaaagcgtga tgaagcgata agccgcggat gcgg
//
LOCUS       DATGBK010001227         2565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_38480, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001227 DATGBK010000000
VERSION     DATGBK010001227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38480"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VKJ77_17125"
     CDS             <1..331
                     /locus_tag="VKJ77_17125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47047.1"
                     /translation="RPSGFSSAWKKRSPTKSNPRVVTRGKGALSTAVVCNGYHAGHEP
                     CPAALLTLPFIVFIRVAADRAVHPVEMIFETLMRVANWDQLERIWEFVVGFFKFLWAL
                     LRFLGGG"
     gene            complement(454..1638)
                     /locus_tag="VKJ77_17130"
     CDS             complement(454..1638)
                     /locus_tag="VKJ77_17130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC47048.1"
                     /translation="MKKYVMAVVASLMLVSAAAFAAVPTASQIEQSMTQGNWSQADSQ
                     LNEVLQAHPNNAKAHYLYAQVLDREGRSSDALAQVQQARTLDPAIKFTDPSRFNAMEA
                     RIRSDANRVNSSTNTSNSTSTSVTRNPFNQGAMAAPEKHGPSMGMWVLLAVLFVGIAL
                     VLRWGLKRARSNDDGQADADRRTQLKRATELLNDVRSLKLDVRLSTQPGHEAMLQEVE
                     GIETQLRQMVEALSNSKNPVPPYAIEDLANQIESVRARSEGRPDPRAAAAAPANAEGQ
                     SVYAQEAERFGRNPQGQPPYSPYPQQQPPVIVQQGGGFGGGMGGLLTGVLLGEALSGG
                     NRERVIEREVPVDDDELRRRRGNDGNNGGGLDFGNGSNDWSDNGGGVDLGSNDSGNWD
                     NS"
     gene            complement(1904..>2565)
                     /locus_tag="VKJ77_17135"
     CDS             complement(1904..>2565)
                     /locus_tag="VKJ77_17135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HMC47049.1"
                     /translation="SRTVKGLLNDAADTVQDPSRDARQIVRELDDSIAKAENSLIEIE
                     AQVATQQSKRDVAAEKAKKYEDGAKRALQGGDEALAREALGAQANAETERDALAGELV
                     TLVPSVDHLKQQINDMRQRRNELNSRSNILQAKQQIATAKDVAATALGGIGGKNLSED
                     FQKLEDKVQLSNARSDARLNSADQKSGKALEDKLAALTSGPSVEDRLEALKKQINTPT
                     Q"
BASE COUNT          438 a          797 c          756 g          574 t
ORIGIN      
        1 gcgaccaagc ggattttcaa gcgcctggaa gaagcgctca ccgacgaaat cgaacccgag
       61 ggtggtaacg cggggtaagg gagcgttatc tacggcagtg gtttgtaacg gctatcatgc
      121 gggtcatgaa ccttgccccg ctgctttgct tacattgccc tttatcgttt tcatccgcgt
      181 cgcggcagat cgtgcagtgc acccagtcga aatgatcttc gagacgctta tgcgtgtcgc
      241 gaactgggat caactcgaac gcatctggga atttgtagtg ggattcttca aattcctctg
      301 ggcgctgctg cgctttctcg ggggcggatg aagactgcat cgggttgaac tgacgttgga
      361 tttgccgcac caataaaaaa agctccgaac gaatcaatca gattcgttcg gagcttttta
      421 acatccagcc ggcggtcaga tcaggagctc agatcaggag ttgtcccagt tgccggaatc
      481 gttgctgccc aggtcgacgc cgccgccgtt gtcgctccag tcgttcgagc cgttgccgaa
      541 gtcgagaccg ccgccgttgt tgccgtcgtt accacgacgg cggcgcaatt cgtcgtcgtc
      601 gaccggaact tcgcgttcga tcacacgctc acgattgccg ccggacagcg cctcgccgag
      661 cagcacgccc gtcagcaatc cgcccatgcc gccaccaaaa ccgccgcctt gttgcacgat
      721 gaccggcggc tgttgttgcg gataaggcga atagggcggc tggccttgcg gattacgccc
      781 aaaacgctcg gcttcctggg cataaaccga ctggccctcg gcatttgccg gtgcggctgc
      841 agcagcgcgt ggatcgggcc ggccttccga acgtgcccgc acgctctcga tctggttcgc
      901 cagatcttcg atcgcgtagg gcgggacggg attcttcgaa ttggacagcg cttccaccat
      961 ctggcgaagc tgcgtctcaa tgccttcgac ttcctgaagc atcgcttcgt gacccggttg
     1021 tgtcgataaa cgcacgtcga gcttcagcga ccggacgtcg ttgagcaact cggtggcgcg
     1081 cttgagttgc gtgcggcgat cggcgtcggc ctggccgtca tcgttcgaac gcgcgcgttt
     1141 cagaccccag cgcagcacga gcgcaatccc gacgaacagg actgcgagca acacccacat
     1201 gcccattgaa ggcccgtgtt tttcgggagc cgccatggcg ccttgattga acggattgcg
     1261 cgtgaccgag gtagacgtcg aattagacgt attagtcgat gaattcaccc ggttcgcgtc
     1321 cgagcggata cgcgcttcca tggcgttgaa gcgcgaggga tcggtgaatt taatggcggg
     1381 atcgagtgtg cgcgcttgtt gaacctgcgc gagcgcgtct gaagagcggc cttcgcggtc
     1441 gagcacctgc gcgtacagat agtgcgcctt ggcgttgttc ggatgcgcct gcagcacttc
     1501 gttcagctgc gagtcggcct ggctccagtt gccttgcgtc atcgactgct cgatctggct
     1561 ggcggttggc acagcggcaa aggccgctgc cgaaaccagc atcagcgatg caactacagc
     1621 catcacatat tttttcatct gcggaccggg gcgttcgcac ccgtctccat tcatgcgaca
     1681 tttcgatgca attccccaat gctgcccgcg ccgaactgcg ccattgcgcc gttcgccgcg
     1741 ccttcgaccg cgcgcagact tgaggttgcc ctcattgctg gttcacgctg tccggcgttc
     1801 gccccgaagg gcgcaagcct tgatcccgct cttgatcctg catcattcac cggccaacgc
     1861 gaaacctccg cgccggcttt aaaaccagga cctggccggc actttactgc gtcggcgtat
     1921 tgatctgctt cttgagcgct tccaggcggt cttcgacaga cgggccactc gtgagcgccg
     1981 cgagcttgtc ttcgagcgcc ttgccgctct tctgatcggc cgagttcagc cgagcatccg
     2041 agcgtgcatt cgatagctgg accttgtctt ccagcttctg aaagtcttcc gacaggttct
     2101 tgccgccaat accgcccagc gcggtcgccg cgacatcttt cgccgttgca atttgctgct
     2161 tggcctgaag aatgttcgaa cgcgagttga gctcgttgcg gcgctggcgc atgtcgttga
     2221 tctgctgctt caaatgatcc accgacggca ccagcgtcac cagttcgcca gccagtgcat
     2281 cgcgttccgt ttcggcgttt gcctgcgcac ccagcgcttc gcgggcaagc gcttcgtcgc
     2341 cgccctgcag cgcgcgcttg gcgccatctt cgtacttctt cgccttctcg gcagcaacgt
     2401 cgcgtttgct ttgttgcgtg gcgacttgcg cctcgatttc gatcagcgag ttctcggcct
     2461 ttgcaatgct gtcgtcaagt tcgcgcacaa tttggcgagc gtcccgcgac gggtcctgca
     2521 cggtatcggc ggcgtcgttc agcaagccct tgacggtgcg cgaga
//
LOCUS       DATGBK010001228         2456 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_61355, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001228 DATGBK010000000
VERSION     DATGBK010001228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61355"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(159..1610)
                     /locus_tag="VKJ77_17140"
     CDS             complement(159..1610)
                     /locus_tag="VKJ77_17140"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47050.1"
                     /translation="MTPSLRPRARAARQPGIRPRLEWALGAILACQLMVVLDGTVIYT
                     ALPHIRTELGLSRASLSWVQNAYMLTFGGLLLLGARTGDLVGHRRVFIVANGVFTIAS
                     IAGGFAQSADWLLAARAIQGAAGAFAAPAGLALLMLAFPEKAPRARAIRLYTAVSGIG
                     SAIGLVLGGILTDLISWRWVLFVNLPICIVLLIVSLRDLPRTSPSRGRLDIAGALTIT
                     LAMSLMVYGFIHATSANSGPVIAATLTVSAALLCAFVFIEKRAVQPVTPLALFSSPSR
                     SGAYAARMLLIGGMLGTFFFLTQYVQEVLGFDPLQAGLSFVPLSLAQFLMVIYGVPWL
                     TPRVGSLRLLVSGIAIALVGMLFLSGVGIDTAFMPGLLVPFVMLGLGTGAALVPLATA
                     GLAGVAPRDAGAAAGMMTVTHYIGGALGTALLVVIVNLARHPPELSDASGISSHDAQV
                     VLADALAVSAISSAAFFALALLIVLTTMRRQSS"
     gene            complement(1612..2097)
                     /locus_tag="VKJ77_17145"
     CDS             complement(1612..2097)
                     /locus_tag="VKJ77_17145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47051.1"
                     /translation="MDVKTFLPTELYDEVVLYFMRRTGAPRARIEYQVVECLRYLYLI
                     SRYPKQLGGLFLPVEQEIDEIWHYLILQTRPYRELCEERLPGGFFIEHRSLAFSLYQQ
                     EPSRTELIEEALRWLPLYHSTFGPFDENALPHWTMVRFLHDQLGLSLSDIASLEAEAQ
                     V"
     gene            complement(2200..>2456)
                     /locus_tag="VKJ77_17150"
     CDS             complement(2200..>2456)
                     /locus_tag="VKJ77_17150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47052.1"
                     /translation="DDLICATSPDVFVYQLRIELSGARLCYTTFDGVPLGTPTVANLQ
                     DALRASTGLDCAIEHQACLPVGRSGKYAWLATQARSTNAG"
BASE COUNT          565 a          715 c          765 g          411 t
ORIGIN      
        1 tacccgtatc catattggct cgtctggcag cagcgtgaag tgctgagtgt gaagcagacg
       61 catttcatgg aatggatcga cgccgaggtg aagcgctatc tgaatcgcgc cgcttgatga
      121 gaagccgcgc gctccaatat acagcggcgc tccagcactc aggatgattg acggcgcatc
      181 gtcgtcagta cgatcagcaa tgctaacgcg aagaatgccg ccgagctgat cgcggacacg
      241 gctaatgcat cggcaagtac gacctgggcg tcgtggctcg atatcccgct cgcatcggac
      301 agctcaggtg gatgacgtgc gagattgacg ataaccacca gtaaggccgt tcccagtgcc
      361 ccgccgatgt aatgggtgac agtcatcatg ccggcggccg cgccggcgtc acgcggcgcg
      421 acacccgcaa gaccggctgt tgccagtggc accagggcgg ccccggttcc cagtccaagc
      481 atgacgaagg ggacgagcaa gccaggcatg aatgccgtat cgatccccac accgctcagg
      541 aaaagcatac caacgagggc gatggcaatg cccgagacga gaagtcgcag actgcctacg
      601 cgcggcgtca gccacggcac gccatagatg accatcagga actgcgctaa tgacagcggc
      661 acgaacgaaa gccccgcttg gagcggatcg aatcccagca cctcctggac atattgtgtg
      721 agaaagaaaa aggtaccgag catgccacca atgagcagca ttctggctgc ataggcgcct
      781 gagcgcgacg gggagctgaa gagtgcaagt ggcgtgactg gttgcacggc ccgcttttcg
      841 atgaaaacga acgcgcagag taatgctgcg ctgaccgtga gggttgccgc aatcaccggg
      901 ccggaatttg ccgatgtcgc gtgaatgaaa ccgtacacca tgaggctcat cgcgagcgtg
      961 atcgtcaatg cacccgcgat gtcgagacgt ccgcggctag ggctggtgcg cggcaaatca
     1021 cgcaggctga caatcagtaa aacgatacag atcggcaggt tgacgaacag cacccatcgc
     1081 catgagatga ggtcggtcaa gatgccgccg agtacgagtc cgatcgcgct gccaattccc
     1141 gaaacggcgg tgtacaaacg gatcgcccgc gcgcgcggcg ccttctccgg aaaagcgagc
     1201 atcaacaatg cgagtcccgc cggcgcggca aacgctccgg cggcgccttg tatggcgcgc
     1261 gcggccagca accagtcggc ggactgggca aagccgcccg cgatcgaggc aatggtgaac
     1321 accccgttcg ccacgatgaa aacgcgccgg tgcccgacga ggtcacccgt gcgagcgccg
     1381 agcagcagca gcccgccaaa cgtcagcatg taggcattct gaacccagga caggcttgcg
     1441 cgcgagaggc cgagttccgt gcgaatgtgc ggtagcgccg tatagatcac ggttccgtcc
     1501 agaacgacca tcaactggca cgcgagaatc gcgcctagcg cccattcgag cctgggccgg
     1561 atgccgggtt ggcgcgccgc gcgtgcacgg ggccgcaacg atggcgtcat gtcatacctg
     1621 cgcttcggct tcaagcgacg cgatgtcaga cagggacagg cccaactgat cgtgcaggaa
     1681 gcgaaccatg gtccagtgag gaagcgcatt ttcgtcgaac gggccgaacg tgctgtgata
     1741 cagcggcaac cagcgaagcg cctcctcgat cagctccgtc cggctgggtt cctgctgata
     1801 taaggagaaa gcgaggctac gatgctcgat gaaaaagcca ccaggcaaac gctcctcgca
     1861 tagctcgcga tagggccgcg tctgcaggat caggtagtgc cagatttcat cgatttcctg
     1921 ttcgacagga aggaacagac cgcctagctg cttcgggtag cgagatatca ggtacagata
     1981 gcgcagacac tctacaacct gatattcgat gcgtgctcgg ggcgcgccgg tgcggcgcat
     2041 gaaataaagc acgacttcgt cgtaaagctc agtcggcaga aaggtcttta cgtccacgac
     2101 gcagacaggc gaatggctgg gaggcatagg atttagtttc ggtttgttta atttaggtaa
     2161 gtcgtacctc gacgcgcctc gatggcgagc gccgtctctt caaccggcgt tggtcgaacg
     2221 ggcctgcgtg gcgagccacg cgtactttcc tgaccggccg acgggaagac aggcttgatg
     2281 ttcaattgcg caatccaggc ctgttgacgc gcgcagcgca tcctgcagat tcgcgactgt
     2341 gggagtaccg agcggtacac cgtcaaatgt cgtgtagcaa agtcgagcgc ctgacagctc
     2401 gatccgcaac tgataaacaa atacgtcggg cgatgtagcg cagatcagat cgtcga
//
LOCUS       DATGBK010001229         2222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_14388, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001229 DATGBK010000000
VERSION     DATGBK010001229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14388"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(102..1511)
                     /locus_tag="VKJ77_17155"
     CDS             complement(102..1511)
                     /locus_tag="VKJ77_17155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013343065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47053.1"
                     /translation="MNTKSAALSDRSNSTPTDETSDAIDIAALIDSHPLSRFQKWVMV
                     LVGFSVVMDGFDVQAMGFVAPSIIHEWGVSRAAMGPVFATSLIGMMLGSLILGPVADR
                     IGRRPVLIGATLFLSVCMFATSFASTLPQLLVLRFITGLGLGGIMGNAIALVSEYSPT
                     RKRATLMMWVSCGFTGGAVLGGLASAALIPAAGWRSVFLFGGAVPLAIAIAMLAYLPE
                     SMQFLVLRQRGLARVSHWLSKISPLVESGTPHRYLVREQALTGMPVSALFASGRARVT
                     LLLWAVNFMNLLNLFFLANWLPTIAADAGYGVSRAALVGTTLQVGGVIGTIAMGPLID
                     RWGFFRVLSPGYLVAALAIAGIGQMSHVSFALMMAFVVVSGFGIVGAQPANNTLAATV
                     YPTALRATGVGWSLGIGRAGSIVGPIVAGNLMELHWSAGRLFVAAAIPAVLSCVIIAV
                     LSRDRLFASSSAAGEGEVV"
     gene            complement(1542..>2222)
                     /locus_tag="VKJ77_17160"
     CDS             complement(1542..>2222)
                     /locus_tag="VKJ77_17160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC47054.1"
                     /translation="FAALPMQDPEAAARELERCVTQLGFHGFLVNGFSQVGDEHTVAY
                     YDAPQFADFWNHAAALGKPFYMHPRDPLPSREPIYDDSPWLTGPTWAFAAETSVHALR
                     LMSSGLFDRHPALQMILGHFGEGIPFNVWRIDHILRKGRRGMPCAREIGDYLRENVYI
                     TTSGNFRTPTLLSTLLEVGSGRIMYSVDYPFEKHEHAARWFDNCEISENDRRKIGRDN
                     AQRLFGLK"
BASE COUNT          512 a          705 c          634 g          371 t
ORIGIN      
        1 tgactcagac cgctaacgct agaacgtggc aacccggcat cacctccgcc caccaatccc
       61 aaaacctcgc gcccaacggc actgtgcacg ccaagttccc ctcacacgac ttccccctcg
      121 ccagcagcag acgaagacgc aaacaacctg tcacgcgaaa gcacggcaat aatcacacac
      181 gacaacaccg cgggtatcgc agccgccaca aagaggcgcc ccgccgacca atgcaattcc
      241 atcaaattac ccgcgacaat aggaccgaca atcgatccgg cgcgaccgat acccagactc
      301 cagcccaccc ctgtagctcg cagcgcggtg ggataaacag ttgccgcaag cgtattgttc
      361 gccggttgcg cgccgacaat tccgaacccg ctcaccacga caaacgccat catcagcgcg
      421 aacgagacgt gcgacatttg accgatcccg gcgatcgcca gagccgcaac cagatagccg
      481 ggcgacagga cacggaagaa tccccaacgg tcaataagcg gccccatcgc gatcgttcct
      541 attaccccgc ctacttgaag cgtggtgccg acaagcgccg cgcgagacac gccgtatccg
      601 gcatcggcgg caatggtcgg caaccagttc gccaggaaga acaggttcag caagttcatg
      661 aagttcacgg cccacagcag cagcgtcaca cgtgcgcggc cggacgcaaa tagtgcgctc
      721 accggcatgc ctgtcagcgc ttgttcacgc acgaggtagc gatgcggcgt accgctttct
      781 acgagcgggg agatcttgct aagccagtga ctcacgcgag cgagaccgcg ctggcgcagt
      841 acgaggaact gcatcgattc aggcaggtag gcgagcatcg ctatcgcaat ggcaagggga
      901 accgcaccgc caaatagaaa tacggatcgc catcccgccg ccggaatcag cgccgctgac
      961 gctaaaccac cgagtactgc gccgcccgta aagccgcacg agacccacat catcagcgtt
     1021 gcccgtttgc gcgtcgggct gtattcactg accaatgcaa tcgcgttgcc cataatgccg
     1081 ccaagcccca gtccggtgat gaaacgtaac acgaggagtt gcggcagcgt cgaagcgaac
     1141 gaagtcgcga acatgcagac ggagagaaaa agcgtcgccc cgatcagcac gggccgtcgt
     1201 ccgatccggt cggcgactgg acccaggatt aacgacccaa gcatcatgcc gatcaggctc
     1261 gtggcgaata ccggtcccat cgccgcgcgg gaaacacccc attcgtgaat gatcgacggt
     1321 gcgacgaagc ccatcgcctg aacgtcaaat ccatccatca caaccgagaa gcccacgagc
     1381 accatcaccc atttctggaa gcggctgagg ggatgactgt cgatgagtgc ggcaatatcg
     1441 attgcgtcgc tcgtctcgtc ggttggcgtg ctattgctgc gatcggatag tgcggcggat
     1501 tttgtgttca tcgtggctcc ggacctctgc gacattgttt tctacttcag gccgaagaga
     1561 cgttgcgcat tgtcgcgtcc gatcttgcgg cggtcgttct cgctgatctc gcagttgtcg
     1621 aaccatcgcg cggcgtgttc atgcttttca aacgggtagt cgactgaata catgatgcgg
     1681 ccgctaccca cttcgagcag ggtcgacagc agcgtcggtg tgcggaaatt accactggtg
     1741 gtgatgtaga cgttctcgcg cagatagtcg ccgatctcac gggcgcatgg catgccgcga
     1801 cggcccttgc gcagaatgtg atcgatgcgc cagacgttga agggaatgcc ctcgccgaag
     1861 tgcccaagga tcatctgcaa tgcggggtgc cggtcgaaca ggccgctcga catcaggcgc
     1921 aacgcgtgca cgctcgtttc cgcagcgaat gcccaggtcg gtcccgtcaa ccagggactg
     1981 tcgtcgtaga taggttcacg gcttggcagc gggtcgcgcg gatgcatata aaagggcttg
     2041 ccaagagccg ccgcatgatt ccagaaatcg gcgaactggg gagcatcgta gtaagcaacg
     2101 gtgtgctcat cgccgacctg ggaaaaaccg ttcacgagga aaccgtggaa accaagttgt
     2161 gtcacgcagc gctccagttc gcgcgcggca gcttcgggat cctgcatcgg caacgcggcg
     2221 aa
//
LOCUS       DATGBK010001230         1801 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_14401, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001230 DATGBK010000000
VERSION     DATGBK010001230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14401"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..470
                     /locus_tag="VKJ77_17165"
                     /pseudo
     CDS             1..470
                     /locus_tag="VKJ77_17165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004525126.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
     gene            482..1204
                     /locus_tag="VKJ77_17170"
     CDS             482..1204
                     /locus_tag="VKJ77_17170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004190506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47055.1"
                     /translation="MTALTVRLRKHFITPERDFMLDIAFRSTSQRIVLFGPSGAGKSL
                     TLQTIAGLITPDDGEIVLNGTTLLDTANAIDLSPQARRIAYLFQDYALFPHLNVRQNI
                     AFGLKRGWWNPSKHVSHADVDYWLNAFDLIQVARQFPAQLSGGQKQRVALARALVPHP
                     QLLLLDEPFSALDMTLRQRMRQELADLQSRLDIPMVLITHDPDDVAMFGDQVVSLREG
                     IVQPDDALNALSPSRQESRSTP"
     gene            complement(1167..>1801)
                     /locus_tag="VKJ77_17175"
     CDS             complement(1167..>1801)
                     /locus_tag="VKJ77_17175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HMC47056.1"
                     /translation="AGTTLVVRATGGKGGGGTTLTAKALRLIDTYRVIEREHQAFLER
                     AGAAIEGFAQDWRLIGRIGMKTSARNQLFGTVSKVTRGSVNDEVELTLSGGQSIVAVV
                     THESTGSLGLKEGVEAFALVKASWVMLMVDDAEGSTGTMRISARNQLRGKVSSVTPGA
                     VNAEVSLALDDATTVTAIITNESVTTLGLVQGQAAIAAFKASSVILGVTD"
BASE COUNT          323 a          598 c          522 g          358 t
ORIGIN      
        1 ggcgtggcgt gatcggggca tggctcgaca agttcgacat tcagttggtg ttcacctggt
       61 aaggcgcggt gatcgcgtcc gccgtggtcg catttccact cgtgctgaag tcggcgcgca
      121 ccgcatttga gacggtcgat ccgcaattcg aacgcgcggc acgcacactc ggcgtcagtg
      181 aagccgccgt gttcttccgc gtgactctgc cgctcgccgc acgcggcatc ctggccggcg
      241 cgctgctcgc gtttgcgcgg gcgctggggg agttcggtgc cacgttgatg atcgccggga
      301 acttgccggg caggacacag acgctctcgg tcgccgtcta tgccgctgta caggccggcg
      361 acgacagcac cgcgaacatt ctcgtgatcg tgacctcggt cacgtgtgtg gtcatcctgc
      421 tcgcagccgg acgactgctg ccgcagcgct cgacagcatc agtgcgttaa acataaccgc
      481 catgaccgct cttaccgtcc gcctgcgcaa gcatttcatc acgcccgagc gcgatttcat
      541 gctcgatatc gcgtttcgtt caaccagtca gcgcatcgtg ctgttcgggc cgtcgggcgc
      601 gggcaaaagc ctgacgctgc aaaccatcgc cggtctgatc acgccggacg acggcgagat
      661 cgtcctgaat ggaaccacgc tgctggatac ggccaatgca atcgacctga gcccgcaagc
      721 gcgccggatc gcttatctgt ttcaggacta cgcgctgttc ccgcacctga acgtacgcca
      781 gaacattgcg ttcggcctga agcgcggctg gtggaatccg tcgaaacacg tttcgcacgc
      841 ggatgtggac tactggttga acgcgttcga tctgatccag gttgcgcggc agtttccggc
      901 gcaattatcc ggtggacaaa agcaacgtgt tgcgttggcg cgcgcgctgg ttccgcatcc
      961 gcaattgctg ttgctcgacg aacctttttc agcgctcgac atgaccttgc gccagcgcat
     1021 gcgccaggag ctggccgacc ttcaaagccg cctggatatt ccaatggtac tcatcacgca
     1081 cgatcccgac gacgtcgcca tgttcggcga tcaggtcgtg agtctgcgcg aaggcatcgt
     1141 gcaaccggac gatgcactca acgccctcag tccgtcacgc caagaatcac gctcgacgcc
     1201 ttgaacgccg cgatggcggc ctgaccttgc acaagcccga gcgtcgtcac gctctcgttg
     1261 gtgatgatgg ccgtgacggt agtagcgtcg tccagtgcca gagaaacctc cgcattcacc
     1321 gcacccggcg tgacgctcga caccttgccg cgcaactggt ttcgcgccga gatccgcatg
     1381 gttccggtag acccttcggc gtcatcgacc atcagcatca cccatgacgc cttcacgagc
     1441 gcaaacgcct caacgccctc cttgagaccg agcgacccgg tgctttcgtg cgtgaccacg
     1501 gcgacgatcg attggccacc ggacaatgtg agttcaacct cgtcgttcac agaaccgcgc
     1561 gtgactttac tcaccgtgcc aaacagttgg ttgcgtgcgc ttgtcttcat gccgattcgt
     1621 ccaataagcc gccagtcctg cgcgaaacct tcaatcgccg cgcccgcgcg ttccagaaaa
     1681 gcctgatgct cccgttcgat aacccgatag gtgtcaatca gtctcagcgc cttcgccgtc
     1741 agcgtggtcc cgccgccgcc cttgccaccc gtggcacgca cgacgagcgt ggtgccagcg
     1801 a
//
LOCUS       DATGBK010001231         3834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_14415, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001231 DATGBK010000000
VERSION     DATGBK010001231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3834
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14415"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1511)
                     /gene="iolC"
                     /locus_tag="VKJ77_17180"
     CDS             complement(<1..1511)
                     /gene="iolC"
                     /locus_tag="VKJ77_17180"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047590 - 5-dehydro-2-deoxygluconokinase
                     activity [Evidence IEA];
                     GO_process: GO:0019310 - inositol catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HMC47057.1"
                     /translation="MALQSSTGSRFATGRTRDIVCLGRLAVDLYAQQVGARLEDVSSF
                     AKYLGGSSANIAFGCARLGLKSAMLSRVGNDHMGRFLTETLEREGCDTSHVRIDHDRL
                     TGLVLLGIEDRDTFPLVFYRDDCADMAVDENDFDEAFIASSKALLITGTHFSTEQVNR
                     TSRRALEYARRNQVRTVLDIDYRPVLWGLTGKADGETRFIANESVTAHLQSILPLMDL
                     VIGTEEEFRIAGGKDTMIDALAAVRAVTNAMLVVKRGPMGCSIIDGDVPVSIDDAPVY
                     RGVEVEVLNVLGAGDAFASGFLAGWLRDEPLEACARTANACGGLVVSRHGCAPAMPTP
                     AELTYFLDAAQADPARMRRPDRDATLARLHRVTPARKTWDEVLGFAFDHRNQFFDLGQ
                     QTGADEARIAALKALFVEAVAQTEKERGLEGRIGVLIDDRYGQDALNAATGRGWWIGR
                     PVELPGSMPLIFDHGRSIGTTLIEWPREHVAKCLVHYHPDHPHDLRLEQEAQIR"
     gene            complement(1564..2382)
                     /locus_tag="VKJ77_17185"
     CDS             complement(1564..2382)
                     /locus_tag="VKJ77_17185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47058.1"
                     /translation="MSDPIQSAPPAPEDTILALENVSKFFGKVIALNGVTLRLKRGEV
                     HCLLGDNGAGKSTLIKTLAGVHTPSSGEYLVDGKPVRFGSPKEALDLGIATVYQDLAL
                     VPLLSVARNFFMGREPQKKRFGFINVMDLDLAAETSRARLSEMGINVRDAHQPIGTMS
                     GGEKQCLAIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHTARAKGISVIFITHNV
                     HHAYPIGDSFTLLNRGKSMGTFTKDTITKNEVLDMMAGGAEMQEMMNELEGAPA"
     gene            complement(2398..3579)
                     /locus_tag="VKJ77_17190"
     CDS             complement(2398..3579)
                     /locus_tag="VKJ77_17190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47059.1"
                     /translation="MGVAGKPILSGHRKASDDVATSSSSTVTAAASSDERIRRESRFG
                     HILNRPEFAAISGAVLVFVVFGITAGGSGMFNLDGIMNWSQVSAYLGILAVGACLLMI
                     AGEFDLSIGSMIGFAGMMVAIPTVYFHWPIWLAIIFAFAGCMLLGALNGYIVMRTRLP
                     SFIVTLAFLFILRGLTLALSIMFADRTIVSGVGDIAAKDWFANTLFHGVALRDLFVWL
                     GHIGILKMLDNGQPLVPGIPKVILWWVVLAAIGAFVLAKTRFGNWIFAAGGDAVAAKN
                     VGVPVRRVKISLFVLTAFCACLFAVLQVCDIGSAAADRGLEKEFEAIIAAVIGGTLLT
                     GGYGSVVGACFGALIFGVVQIGIGYTSVPSDWFRVFLGMMLLIAVLFNHYVRRRVSQA
                     Q"
BASE COUNT          775 a         1174 c         1177 g          708 t
ORIGIN      
        1 cgaatctgcg cttcctgttc caggcgaaga tcgtgcggat gatcgggatg atagtgaacc
       61 aggcacttcg ccacatgctc gcgcggccac tcgatcagcg tcgtaccgat cgaccggccg
      121 tgatcgaaga taagcggcat cgagcccggc aattccacgg gccgtccgat ccaccagcca
      181 cgtccggtcg ccgcgttcaa cgcgtcctga ccgtagcggt catcaatcag cacgccgatg
      241 cgtccttcca ggccgcgttc tttttccgtc tgtgccacgg cttccacgaa caaggctttg
      301 agggcagcaa tgcgagcctc atccgcgccg gtttgctgcc cgagatcgaa gaactggttg
      361 cggtgatcga aggcaaaacc gagcacttcg tcccatgttt tgcgagccgg cgtaacacga
      421 tgcaggcgcg cgagcgttgc atcacgatcg ggcctgcgca tgcgggcagg gtcggcctgc
      481 gccgcatcga ggaagtaggt gagttcggcg ggcgtcggca tggcgggcgc gcaaccatga
      541 cgcgatacga ccagcccacc gcatgcattc gccgtgcgcg cacaggcttc cagcggttcg
      601 tctctcaacc atccagcgag gaagcccgac gcgaaggcat cccccgcgcc gagcacgttc
      661 agaacctcca cttcaacgcc gcgataaacc ggcgcatcgt cgatcgaaac cggcacgtca
      721 ccgtcgatga tcgagcagcc catcggcccg cgcttgacca ccagcatggc gttcgtcacc
      781 gcgcgaacgg ccgcgagtgc gtcgatcatc gtgtccttgc cgcctgcaat ccgaaactct
      841 tcttccgtgc cgatcacaag atccatcaac ggcaagatgc tttgcagatg cgcggtcacg
      901 ctctcgttcg cgatgaaccg tgtttcgcca tcggccttgc cggtcagtcc ccaaagtacc
      961 ggccggtaat cgatatcgag cactgtgcgg acctggttgc ggcgcgcgta ttcgagcgca
     1021 cgacggctcg tgcggttgac ctgttcggta gagaaatgcg tacccgtaat cagcagcgcc
     1081 ttcgatgaag caatgaacgc ctcgtcgaag tcgttttcat cgacggccat gtcggcgcag
     1141 tcatcgcgat aaaacacgag cgggaacgta tcgcgatctt ctataccgag caggaccagg
     1201 ccagtcagcc ggtcatgatc gatgcgcacg tggctcgtat cgcagccctc tcgctccagt
     1261 gtctcggtga gaaagcggcc catgtggtcg ttgccgacgc gtgagagcat tgcggatttg
     1321 aggccgagcc gcgcgcaccc gaacgcgata ttcgccgacg agccgccgag atatttcgcg
     1381 aagctcgaca cgtcttcgag ccgggcgccg acttgttgcg cgtagagatc gaccgcgagc
     1441 cgcccgaggc acacgatgtc gcgggttcgc ccggttgcga agcgcgatcc ggttgatgat
     1501 tgcaatgcca tgttcgatcc tgttctgtag atgacgacga atgcagcggc cgcgcgtgcc
     1561 ggctcaagcc ggagcgccct cgagttcgtt catcatttcc tgcatttcgg cgccgcccgc
     1621 catcatgtcg agtacttcgt tcttggtgat cgtgtctttc gtgaacgtac ccatcgactt
     1681 gccgcgattg agcagcgtga acgaatcacc gatgggatac gcgtggtgta cgttgtgcgt
     1741 gatgaagatc acggagatgc cttttgcgcg cgccgtgtga atcaacttca gcacgttaaa
     1801 gctctgcttc acgccgagcg ccgcagtggg ttcgtcgaga atcagaacgc gcgcgccgaa
     1861 gtggatcgcc cgtgcaatgg cgaggcattg tttttcgccg ccggacatcg tgccaatagg
     1921 ctgatgcgcg tcccgcacgt tgatgcccat ttcggagagc cgcgcacgcg atgtttccgc
     1981 ggcgagatcc aggtccatca cgttgataaa gccgaagcgt tttttctgcg gctcacgtcc
     2041 catgaagaag ttacgcgcca ccgacagcag cggtacgagc gcgagatcct gataaaccgt
     2101 tgcaataccg agatcgagcg cttctttcgg cgagccgaag cggaccggtt tgccatcgac
     2161 gagatactcg ccggaggagg gcgtatggac gcccgccagc gtcttgatca gggtcgactt
     2221 gccggcaccg ttgtcgccga gcaggcagtg cacttcgccg cgtttgaggc gtagcgtgac
     2281 gccgttcagc gcgatcacct tgccgaaaaa cttgctgacg ttttccagcg caaggatggt
     2341 gtcttcgggc gcgggcggtg cgctctggat gggatctgac atgattttcc tccttgctta
     2401 ttgagcctgt gacacgcgac ggcgcacgta gtgattgaac agcacggcga tcagcagcat
     2461 catgccgagg aacacgcgga accagtcgga aggcacgctg gtgtagccaa tgccgatctg
     2521 gaccacgccg aagatgagcg cgccgaaaca tgcgccgacc accgagccgt agccgccggt
     2581 cagcaaggtc ccgccaatca ccgcggcgat gatcgcctcg aattcctttt cgaggccccg
     2641 gtctgccgca gccgaaccga tgtcgcacac ctgcagcaca gcaaacaggc acgcacagaa
     2701 ggcggtgagc acaaagagcg agatcttcac gcgccgcacc ggcacgccga cattcttggc
     2761 cgccaccgcg tcgccgccgg ccgcaaagat ccagttgccg aaacgggtct tcgcgaggac
     2821 gaacgcgcca atggctgcga gcacgaccca ccagaggatc actttcggaa tgcccggcac
     2881 gagcggctga ccgttgtcga gcatcttcag gattcctatg tgccccagcc acacgaataa
     2941 atcgcggagc gcgacgccat ggaaaagggt attggcaaac cagtctttcg cggcaatgtc
     3001 gcctacgccg gaaacgattg tccggtcggc gaacatgatc gacagggcga gcgtcaggcc
     3061 gcgcaggatg aacaggaagg ccagcgtgac gataaacgac ggcagccgcg tgcgcatgac
     3121 gatataaccg ttcaaggcgc cgagcagcat gcagcccgcg aaggcgaaaa tgatcgcgag
     3181 ccagatcggc cagtggaaat agacggtggg aatggcgacc atcatcccgg caaagccgat
     3241 catggagccg atcgagaggt cgaactcgcc ggcaatcatc aacaggcagg cgccgacggc
     3301 aaggatgccc aggtaagcgg acacctgcga ccagttcatg atgccgtcga gattgaacat
     3361 gcccgagccg ccggcggtga tcccgaacac gacgaagacc agtacggctc ccgagatcgc
     3421 ggcgaattcc ggacgattca ggatgtgccc gaatcgggat tcgcggcgga tacgctcgtc
     3481 ggaggaggcc gctgcggtga cagtggatga gctcgaggtc gcgacgtcgt cagacgcctt
     3541 gcgatgtccc gagagaatag gttttccggc tacgcccatg atgtttcctt cgtctttcat
     3601 tcgcgatgcg gcgttggttc acggggcgaa cgtgctgatg cgcgagcgat acggttcaat
     3661 agtgcggatg acgtgatgaa tgcattgcaa atgctgcaaa gacggcggcg cggcgcttac
     3721 gtcatgttgg ccgcgccgcc atcgggttca gcggtactgt cctgcgtact tgagcacctt
     3781 gtcgacattt tccttggtga taaagcccgg gcctgagccg atattgcgcg cccc
//
LOCUS       DATGBK010001232         1529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_338562, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001232 DATGBK010000000
VERSION     DATGBK010001232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338562"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..662
                     /gene="prmC"
                     /locus_tag="VKJ77_17195"
     CDS             <1..662
                     /gene="prmC"
                     /locus_tag="VKJ77_17195"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: protein motif:HMM:TIGR03534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HMC47060.1"
                     /translation="PVARILGIKEFWGLPLHLSAATLVPRPDTETVVEAALDIVRSDA
                     ATTQPLRIADIGTGSGAILLALLHELPNAWGVGIDISFDALQTARANAARLGLAQRAT
                     FVLSDYLAALTGPFDLIVSNPPYIRSADIAGLAPDVREHDPHRALDGGADGLDAYRTI
                     ARQANARLAPGGTLVLEVGQHQSADVEALLVAAGLRLPGRPRADLGGIPRAVAARKPP
                     L"
     gene            1151..>1529
                     /locus_tag="VKJ77_17200"
     CDS             1151..>1529
                     /locus_tag="VKJ77_17200"
                     /inference="COORDINATES: protein motif:HMM:NF025137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4167 domain-containing protein"
                     /protein_id="HMC47061.1"
                     /translation="MRNGQNNKRMRNRNNNNNNNNNRRGQNPMTRVFESNGPDIKIRG
                     TASHVAEKYVQLARDARSSGDPVAAENYYQHAEHYFRLIAAAQEQFRQNQPQPRTENE
                     MPAEDGDDESESFSNFGQEPGFVP"
BASE COUNT          335 a          491 c          453 g          250 t
ORIGIN      
        1 agccggtcgc gcgcattctc ggcatcaagg aattttgggg actgccgctg catctctcgg
       61 ccgcgacgct ggtgccgcgt cccgacaccg aaaccgtggt cgaagcggcg ttagatattg
      121 tccgcagcga tgccgcaacc acgcagcctt tgaggatcgc cgacatcggc accggaagcg
      181 gcgcaatcct gctggcattg ctccacgaac tgccgaatgc gtggggcgtc ggcatcgaca
      241 tcagcttcga cgcattacag accgcacgag ccaacgccgc ccggctcggc ctggcgcaac
      301 gcgcaacgtt cgtgctgagc gattacctcg ccgcgctgac cgggccgttc gacctgatcg
      361 tctccaaccc gccctatatc cgctcggccg atatcgcggg cctcgccccg gacgtgcgcg
      421 aacacgaccc gcaccgggcg ctggacggcg gcgccgacgg tctcgatgcc taccgcacta
      481 tcgcccggca ggcgaatgcc cgcctcgccc ccggcggcac cctggtcctc gaagtaggcc
      541 agcaccagag cgccgacgtc gaggctctgc tggtcgccgc aggcctgcgt ttgccgggtc
      601 gcccgagggc cgatctcgga ggtattcccc gggccgtggc tgcccgcaaa ccgccgctat
      661 aaagcccatc ttgaactcaa aaaaacctct tggaatatcg ccccggagcg actacgttcc
      721 ggcatcacat cgatttcggg gttgctgacc tcgtcgatcg tccgggccgt ggttgaagtt
      781 ctcggaacga gagcccgccc gagtgaaagg ttccaaaagg caggtcttat tgagcgcgat
      841 ggctgaaaga gctgcgccgc ttaccgaccg cgaagcgaac gaaagcctga taatacgctt
      901 ggaaaaatca cgcgagaaaa ccgggcttgt tttggcaagc tgaatgatct ggttcagcca
      961 gtgggcatat gagcccgcag gcggttgggg aacgcgtctt tgttgaacgc gatgtactgc
     1021 aaaatcgata ggacgcttta gacggctcgg cacgcatcca gcgagccgca tcgactacga
     1081 ctgcgcgaat attgactgcc aaagttcgaa ttgcgacggc gacaaaccag ggttggtaaa
     1141 aaggcaagac atgagaaacg gtcaaaacaa caagcggatg cgcaaccgga acaacaataa
     1201 caacaacaat aataaccggc gcggccagaa tccgatgacg cgggttttcg aatccaacgg
     1261 acccgacatc aagattcgcg gcaccgcatc ccacgtcgcg gagaaatatg tccagctcgc
     1321 gcgcgatgcc cgcagctccg gtgacccggt cgcagccgag aactactacc agcacgccga
     1381 gcattatttc cgcctgatcg ccgcggccca ggaacagttc cgtcagaacc agccgcagcc
     1441 gcgcaccgaa aatgaaatgc ccgcggaaga cggtgacgac gagagcgaga gcttctcgaa
     1501 tttcgggcag gagcccggct tcgttccgg
//
LOCUS       DATGBK010001233         1537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_245981, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001233 DATGBK010000000
VERSION     DATGBK010001233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245981"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VKJ77_17205"
     CDS             complement(<1..305)
                     /locus_tag="VKJ77_17205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017525638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47062.1"
                     /translation="MSVPAYSAVTRTQGANAALKDGTVRPHTFAFAFEEVPVLVDAFR
                     RMVRGREFDISELAMTTYIAGRRFNPGFTALPIFIVRGFHHGAILYNVNSGVKHPKD"
     gene            356..1195
                     /locus_tag="VKJ77_17210"
     CDS             356..1195
                     /locus_tag="VKJ77_17210"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017525639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HMC47063.1"
                     /translation="METKVTVPALHQMKRDGRKIVGVVAWDFQIAQIADRAGVDIISV
                     GDTVGINLWGQSTPLEVTMDQMVLVCSAVRRGTKRALVSVDFPFGPLQEGTDSAVRAA
                     IRLVKEAGADMIKLDGAADFPEAVRAIARAGIPVFAQFGITPQTSMQYGLDYAEIAKT
                     GAQIPAEMTGRLVDEAQMLEAAGAALLDFTNSGPVAGAAVTQAVTIPVIGGFGGGPWL
                     DGRMRMAHAAIGYAASAIDATTENYANVARITLDAFTAYAKDVREERHIKGSPGAKTA
                     ASP"
     gene            complement(1204..>1537)
                     /locus_tag="VKJ77_17215"
     CDS             complement(1204..>1537)
                     /locus_tag="VKJ77_17215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017525634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47064.1"
                     /translation="IMHVVVIRRELYERDRWIAMALFKAFTAAQRYAYDDYRQTAALK
                     SMLPWSWAESETTRALMGDEWWPYGVARNGAVLETFTRYHHRQGLSPQQLAVRDLFAP
                     ETLEAFKI"
BASE COUNT          305 a          478 c          483 g          271 t
ORIGIN      
        1 aaatccttgg gatgcttcac gcccgaattg acgttgtaca gaatagcccc gtgatgaaat
       61 ccgcgcacga taaagatcgg caaggcggta aagcccgggt tgaagcgtcg cccggcgatg
      121 tacgtcgtca tcgccagctc gctgatatcg aactcgcgcc cgcgcaccat gcggcggaac
      181 gcatcgacaa gcaccggcac ctcctcgaag gcaaaggcga acgtatgcgg acgaacggtg
      241 ccgtctttga gtgcggcgtt tgcgccttgc gtgcgggtga cggcggaata tgccggtacg
      301 ctcacgcggc gcactttcca ggaagaatcg gcatggtatt ggtacacgcg ctagcgtgga
      361 aacaaaagtg accgttccgg cgctgcacca aatgaagcgc gacggacgca aaattgtggg
      421 cgtcgttgcc tgggactttc aaatcgcgca gattgccgat cgcgccggtg tggatatcat
      481 ctccgtcggt gacacggtcg gcatcaacct gtggggccaa agcacgccgc tggaagttac
      541 gatggatcag atggtgctgg tgtgcagcgc cgttcggcgc ggcaccaagc gcgcgctggt
      601 gagtgtcgac ttcccgttcg gaccgttgca agaaggtacc gacagtgccg tgcgcgccgc
      661 gattcgcctg gtcaaagaag ccggcgcgga tatgattaaa ctcgacggcg ccgccgattt
      721 ccccgaggcc gtgcgcgcga tcgcgcgcgc gggcattccg gtgttcgcgc agttcggcat
      781 cacgccgcaa acgtcgatgc aatacggctt ggactacgcc gaaatcgcga agaccggcgc
      841 gcagattccg gccgaaatga ccggccggct cgtcgatgag gcccagatgc ttgaagccgc
      901 cggggccgcc ttgctcgact tcactaactc gggtccggtc gccggggccg ccgtgacgca
      961 agccgttacc attcccgtca tcggcggatt cggcggcgga ccgtggctcg acggccgcat
     1021 gcgcatggca catgcggcaa tcggctacgc tgcgagcgcc atcgatgcga cgaccgagaa
     1081 ttacgccaac gttgcgcgca ttacgctcga tgcgttcacc gcgtacgcca aagatgtccg
     1141 cgaagaacgg cacattaagg gatcgcccgg cgcgaaaacc gccgcaagtc cgtaacgtca
     1201 tcactatatc ttaaacgctt cgagcgtttc gggcgcgaac aaatctcgca cggccaactg
     1261 ctgcggcgat aatccctgac ggtgatggta gcgcgtgaac gtttcgagca ccgcaccatt
     1321 gcgcgccacg ccgtacggcc accattcgtc gcccatgagc gcgcgcgtgg tttcgctttc
     1381 ggcccacgac cacggcagca tcgacttgag cgccgcggtc tgccggtaat cgtcgtacgc
     1441 atagcgctgg gcggcggtaa acgccttgaa caatgccatc gcgatccagc ggtcgcgctc
     1501 gtagagttcg cgccggatca cgaccacgtg catgatc
//
LOCUS       DATGBK010001234         1920 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_130187, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001234 DATGBK010000000
VERSION     DATGBK010001234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130187"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1325
                     /locus_tag="VKJ77_17220"
     CDS             <1..1325
                     /locus_tag="VKJ77_17220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007745563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47065.1"
                     /translation="RSMWILVVLLSLGFFFELYDLLYSGYVAPGLVKSGILTSTTVGL
                     FGMTGVASFIASLFLGLFIGTIACGFLADRFGRRAIFTYSLLWYTVANVIMAFQDTAG
                     GLNFWRFMAGLGIGVELVTIGTYISELVPKHIRGRAFACEQAVGFAAVPVVAFLSYAL
                     VPNKPFGFDGWRWVVLIGAHGALFVWFIRRALPESPRWLAQKGRLAEADAVMTALEAK
                     VEKEYGRPLPLPAAPEPVSTRGSFRDMWIAPYGKRATMMIIFNIFQTVGFYGFANWVP
                     TLLIHQGITITTSLMYSTIIAIAAPVGPIIGLFIADKFERKSVIVVMAGAIVVCGLVF
                     SQVSGAALLVCMGVGLTLASNIMSYSFHAYQTELFPTSIRARAVGFVYSWSRFSAIFT
                     SFFIAGVLKAFGTTGVFMFIAGAMVVVMLAIGLMGPKTRDLALEQISH"
     gene            complement(1502..>1920)
                     /locus_tag="VKJ77_17225"
     CDS             complement(1502..>1920)
                     /locus_tag="VKJ77_17225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal domain-containing protein"
                     /protein_id="HMC47066.1"
                     /translation="HLRLMLVNGTGLCALVLSEGRTKHHDLSDTLTDLQRRYTAPLMN
                     VLAQGQTVGQVRADLPLRLMRSLVFGPMEHVLWDATLAKRHLSQAQIDTTADELIEVL
                     WTALQPPAASLTALAQFRQDVEEASRRFAETASREK"
BASE COUNT          322 a          560 c          596 g          442 t
ORIGIN      
        1 cgcgctcaat gtggatactc gtcgtcttgc tgagtctcgg gtttttcttc gaactctacg
       61 acctgttgta ctcaggctac gtcgcgccgg ggctggtcaa gagcggcatt ctcacgtcta
      121 ccaccgtcgg cctgttcggc atgacgggtg tcgcaagttt tatcgcgtcg ctgttccttg
      181 gcttgtttat cggcacgatt gcttgcggtt ttctcgccga tcgtttcgga cgccgcgcga
      241 tctttactta ctcgctgctc tggtacacgg tcgcgaacgt gatcatggct ttccaggaca
      301 cggccggcgg cctgaacttc tggcgcttca tggcagggtt gggtattggc gtggagttgg
      361 taacgatcgg cacgtacatc tccgagctgg tccccaaaca cattcgaggt cgcgccttcg
      421 cgtgcgagca agcggttggt ttcgcggccg tgccggtcgt cgcgttcctc tcttacgcgc
      481 tggtgccgaa caaacctttc ggtttcgatg gctggcgctg ggtcgtattg atcggtgcac
      541 atggggcgct gttcgtgtgg ttcatccggc gcgcgttgcc ggagagcccg cgctggctgg
      601 cgcaaaaagg gcggctcgcg gaagcggacg cggtgatgac ggcgctggaa gcgaaggtcg
      661 agaaagaata cggccggcca ttgccattgc ccgccgcgcc ggaaccagtc agcacgcggg
      721 gaagcttccg cgatatgtgg atcgcgccgt acgggaaacg cgcgaccatg atgatcatct
      781 tcaacatctt ccagacggta ggtttctacg gtttcgccaa ctgggtgccg acgctgctga
      841 ttcaccaagg catcacgatc acgaccagtc tgatgtactc gacgatcatt gcaattgcag
      901 cgccggtcgg gccgatcatc ggcttgttca tcgccgataa attcgagcgc aagagcgtga
      961 ttgtcgtgat ggcgggtgcg atcgtggtct gcgggctggt gttcagccag gtctcgggcg
     1021 cggcgctgct ggtttgcatg ggcgtggggc tgacgctcgc cagcaacatc atgtcgtata
     1081 gcttccacgc gtatcagacc gagcttttcc ccaccagcat ccgggcgcgc gcggtcggct
     1141 tcgtatattc gtggagccgc ttttccgcca ttttcacgtc gttcttcatc gcaggcgtgt
     1201 tgaaggcgtt cggcacgacc ggggtgttta tgtttatcgc cggcgcgatg gtggtggtga
     1261 tgctggctat cggactgatg ggaccgaaga cgcgtgacct ggctctggaa caaatctcgc
     1321 attgagattc cgatcacgcc gttgagcgtg atctcgtcgc tatagggcgc tatagggcgc
     1381 taaatagcaa ctaactgtcc gctgtgtttt gccccgggaa tcggcgaaac cagcggtttg
     1441 ctatataggt agatttgcaa ctaactgtct actcgacgcg cgaccgcgaa tttccgcaat
     1501 ctcatttctc ccggctcgcc gtttctgcga accgccgcga cgcctcctcc acgtcctgtc
     1561 tgaactgcgc aagcgcagtc aggctggcag cgggcggctg tagcgcggtc cacagcacct
     1621 cgatgagttc atcggcggtc gtgtcgatct gagcctgact cagatgccgc ttagcgagcg
     1681 tcgcgtccca cagcacgtgt tccatcggcc cgaagaccag cgagcgcatc agccgcaacg
     1741 gcaagtcggc ccgcacctgg cccactgtct ggccctgagc gaggacgttc atcagcggcg
     1801 cggtatagcg gcgttgaagg tcggtgaggg tgtcgctgag gtcatgatgt ttcgttcgcc
     1861 cttccgataa aaccagcgca cacaagcccg tcccgttcac cagcatcagc cgcaaatgcg
//
LOCUS       DATGBK010001235         2223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_38625, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001235 DATGBK010000000
VERSION     DATGBK010001235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38625"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1415)
                     /locus_tag="VKJ77_17230"
     CDS             complement(<1..1415)
                     /locus_tag="VKJ77_17230"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009330 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) complex [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HMC47067.1"
                     /translation="MDDLFADQEAAPEGEKLTLGDYAERAYLDYAVSVVKGRALPDVS
                     DGQKPVQRRILFAMNEMGLANTAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQAF
                     SMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDEIDMGTVDFMPNYDGSFQ
                     EPKLLPARLPFVLLNGASGIAVGMATEVPSHNLREVAAAAVAMIRDPKIDHARLVELI
                     PGPDFPGGGQIISSQAEIAAAYETGRGSLKVRARWKIEEMARGQWQLVITELPPSTSG
                     QRVLEEIEELTNPKIKLGKKALSPDQLQTKQTLLALLDTVRDESGRDAPVRLVFEPKS
                     SRIDQTEFVNSLLAHTSLESNASINLVMIGTDGRPRQKSIGEILHEWVGFRFTTVTRR
                     TQHRLGKVDDRIHILEGRMIVFLNIDEVIRVIREADDPKQALMDRFKLSERQADDILE
                     IRLRQLARLEAIKIEQELKELR"
     gene            complement(1508..>2223)
                     /locus_tag="VKJ77_17235"
     CDS             complement(1508..>2223)
                     /locus_tag="VKJ77_17235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019254672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HMC47068.1"
                     /translation="SRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERD
                     RLFANNEVHDIAVAIGVDPHGPDSLDQKADLSNLRYGKICILSDADVDGSHIQVLLLT
                     LFFKHFPQLIEQGNVCIARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGV
                     RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLLPVQVGDLGFDDTVTRMTMLMGKGE
                     AASRRSWLEEKGNEVEADI"
BASE COUNT          386 a          733 c          653 g          451 t
ORIGIN      
        1 cgcagttcct tcagttcctg ctcgatcttg attgcttcga gccgcgccag ttgccgcaaa
       61 cggatttcga ggatgtcgtc ggcctgacgc tcgctgagct tgaaccggtc catcagcgcc
      121 tgcttcggat cgtcggcttc gcggatgacg cggatcactt catcgatatt caggaagacg
      181 atcatccgcc cttcgagaat atgaatccgg tcgtccacct tccccagccg atgctgcgtg
      241 cgtcgcgtaa ccgtcgtgaa ccggaagccc acccactcgt gcaggatttc gccgatgctt
      301 ttctggcgcg gccggccgtc cgtgccgatc atcaccaggt tgatcgatgc gttcgactca
      361 aggctcgtgt gcgcgagcag cgaattcacg aactcggtct ggtcgatacg gctcgacttc
      421 ggctcgaaca caagccgcac cggcgcgtcg cggccggatt cgtcgcggac cgtgtcgagc
      481 agggcgagca gcgtctgctt ggtctgcaac tgatcgggac tcagcgcctt cttgccgagc
      541 ttgatcttcg gattcgtcag ttcctcgatc tcctcgagca ccctctggcc cgacgtgctc
      601 ggcggcaatt ccgtgataac cagttgccac tgaccgcgcg ccatctcttc gatcttccag
      661 cgcgcccgca ccttcaggct gccgcggccg gtttcatacg ccgccgcaat ctcggcctga
      721 ctcgaaataa tctgaccgcc gcctggaaaa tccggaccgg gaatcagttc gaccagccgc
      781 gcatgatcga tcttcggatc gcggatcatc gcaaccgcgg cggccgcgac ttcacgcagg
      841 ttgtgcgagg gaacctccgt cgccatcccc acggcaatac ccgacgcgcc gttcagcagc
      901 acgaacggca ggcgcgcggg taacagcttc ggctcctgga acgaaccgtc gtagttcggc
      961 atgaaatcga cggtacccat gtcgatttca tccagcagca atttcgcgat cggagtgaga
     1021 cgcgcttccg tgtaacgcat ggccgcggcg ccgtcaccgt cgcgcgagcc gaagttgccc
     1081 tgcccgtcga tcaacggata gcgcatcgaa aacgcctgtg cgagacgcac gagtgcgtcg
     1141 taggccgact ggtcgccgtg cggatggtat ttacccagca cgtcacccac cacgcgggcc
     1201 gacttcaccg gcttggcggt gttggcgagg cccatctcgt tcatcgcgaa caggatgcgg
     1261 cgctgcacgg gcttctggcc atcagaaacg tcgggcagcg cccggccttt gaccacgctc
     1321 accgcatagt cgagatacgc gcgctcggcg tagtcgccga gcgtcagttt ttcgccttcg
     1381 ggcgcggctt cttggtccgc gaagagatcg tccatcagat ttccagtgtt atgcgttgac
     1441 gaggttcaga gtgtgcatac ggcatcagca tcaggtcggg cgtcacatgc gccgaagcat
     1501 gggagcgtca aatatcggct tcaacttcgt tgcccttctc ctcgagccag ctgcgccgcg
     1561 aggccgcttc gcccttgccc atcagcatcg tcatgcgtgt gaccgtgtcg tcaaacccga
     1621 gatcgccgac ttgaaccggc agcagacggc gggtgtccgg attcatcgtg gtgtcccaca
     1681 actgctccgc gctcatctcg cccagcccct tgaagcggct gatcgaccat tgcgtctcgc
     1741 gcacgccgtc cttcctcagc ttgtccagaa tcgcctcgag ctcaccttca tcgagcgcgt
     1801 agagcttttg cgccggcttc ttgccgcgcg cgggggcatc gacgcgaaac aacggcggcc
     1861 gcgcgatgca tacattgccc tgctcgatca gctgcgggaa gtgcttgaag aacagcgtga
     1921 gcagcaggac ctggatgtgc gagccgtcca cgtcggcgtc cgacaggatg cagatcttgc
     1981 cgtaacgcag attcgagaga tcagctttct ggtcaaggct gtccggaccg tgcgggtcca
     2041 cgccgatggc caccgcgatg tcgtgcactt cgttgttcgc gaacagccgg tcgcgttcgg
     2101 tttcccacgt gttcagcacc ttgccacgca acggcagaat ggcctggaat tccttgtcgc
     2161 ggcccatctt cgcggagccg cctgccgaat cgccctcgac cagaaagagt tcgttgcgcg
     2221 aga
//
LOCUS       DATGBK010001236         2000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_84065, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001236 DATGBK010000000
VERSION     DATGBK010001236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84065"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1240)
                     /locus_tag="VKJ77_17240"
     CDS             complement(<1..1240)
                     /locus_tag="VKJ77_17240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006682202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HipA family
                     toxin"
                     /protein_id="HMC47069.1"
                     /translation="MSTPSSLKPAPPFDLENLFDKIRRLDVHTPQGIAGLLAKESTFV
                     FNYGEIEPDAAVSLTMPVRRKSYSSGALMNVFAMNRPEGYLRYIIEERLARFGTPSDM
                     FLLFLAGRNQIGRLTYALHGQTVPEGEGERLDELLSSPSGQLFERLVSKYALGSGISG
                     VQPKTVVPLAPEVPAGASTLDAHATLPLTTVIVKAEGDDYAGIARNEFLCMSVAREAG
                     FDVPDFWLSNDGLLFVMARFDRALDGTPLGFEDMSVLTGNDKYRGSYEMIGRAVEVYT
                     GADFRAQSLRLFERVALSCFLRDGDAHMKNIGIVYADPTGPRRLSPIYDVVCTGIYPL
                     LDGRMALNLNKSKVFPVPGQLIAYGERLGLKRAEAQAILLRIDQAFDTVAERLSQDDR
                     YKADDLIERIRDVIRRTGAIP"
     gene            complement(1237..1509)
                     /locus_tag="VKJ77_17245"
     CDS             complement(1237..1509)
                     /locus_tag="VKJ77_17245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018442756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HMC47070.1"
                     /translation="MTRKYTDPISNFERVAAELRSLRREQRISQQTLADRAGVARRTI
                     TNAEGAQNVGLHEFCRIANALGYDLTLRPKDTVVFEDLDFFFREDE"
     gene            complement(1724..>2000)
                     /locus_tag="VKJ77_17250"
     CDS             complement(1724..>2000)
                     /locus_tag="VKJ77_17250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HMC47071.1"
                     /translation="LIPLIAPSNNKPLPCTQMLADMRTAPSAPPPGQKQNAKGAPGYM
                     EPGVANPAAASSPSSSSNSAKAAKGASGGPARPAVSTPASAALYRGS"
BASE COUNT          388 a          602 c          604 g          406 t
ORIGIN      
        1 caggaatcgc gccagttcga cggatcacat ctcgaatccg ctcgatcagg tcgtccgctt
       61 tgtatcggtc gtcctggctg agccgctcgg caacagtgtc gaatgcctgg tcgatgcgca
      121 gcaggatcgc ttgcgcctcg gcgcgtttaa gacccaggcg ctcgccgtat gcaatgagct
      181 gcccgggcac gggaaaaacc ttcgatttat tcaggttcag cgccatccgg ccgtcgagca
      241 acggatagat gcccgtgcag acgacgtcgt agatgggcga gagccggcgc ggcccggtgg
      301 gatcggcata gacaatgccg atgttcttca tgtgcgcatc tccatcgcga agaaaacacg
      361 acagcgcgac gcgctcgaac agccgcaacg attgcgcgcg gaaatcggca ccggtgtaga
      421 cctccaccgc ccgcccgatc atttcgtaac tgccgcggta tttgtcgttg ccggtcagca
      481 cgctcatgtc ctcgaagccg agcggcgtgc cgtccagagc acgatcgaaa cgcgccatga
      541 cgaacagcag gccgtcgttg gagagccaga aatcaggtac gtcgaaaccc gcctcgcgcg
      601 ccaccgacat gcacaggaat tcgttgcggg cgatccccgc atagtcgtcg ccttcagcct
      661 tcacgatcac cgtggtcaat ggcaaggtcg cgtgtgcgtc gagggtggac gcgccggcgg
      721 gaacctcggg agcaagcggc accaccgtct tcggctgcac gcctgaaatg cccgagccaa
      781 gcgcatattt gctcaccagc cgctcgaaca attgtcccga tggcgacgac agcaactcgt
      841 caagccgctc gccctcgccc tcaggcactg tctggccgtg cagcgcgtag gtaagcctgc
      901 cgatctggtt tcgcccggcg aggaacagca ggaacatgtc gctgggagtg ccgaagcgcg
      961 cgagccgttc ttcgatgatg tatcgcaagt aaccttccgg gcgattcatc gcgaacacgt
     1021 tcatcagcgc gccgctgctg tagctcttgc gacgcacggg catggtcagc gacacggccg
     1081 cgtccggttc gatttctccg tagttgaaga cgaaggtgct ctccttcgcc agcagaccgg
     1141 ctatgccctg gggcgtgtga acgtcgagcc ggcggatttt gtcgaagaga ttttccaggt
     1201 cgaacggcgg cgcaggctta agcgacgacg gcgtgctcat tcgtcctccc tgaagaagaa
     1261 atccagatct tcgaagacca cagtgtcttt cggacgcagt gtgaggtcat agccgagcgc
     1321 gttggcgatc cggcaaaact catgaaggcc gacgttctgt gcaccttctg cattggtaat
     1381 tgtgcgccgg gcaacgcccg cgcgatcagc cagcgtctgc tgactgatgc gttgctcacg
     1441 ccgcagcgag cggagttccg ctgccacacg ctcgaaattg ctgatggggt cggtgtattt
     1501 gcgcgtcatg atgcgcaatt gtaggctttt tttgtgtttt gcgcagtatg atgcgcattt
     1561 ttgttgatct atttcttatc gatcgaatgc cgcatattgc gcatcattat gcgcaatatg
     1621 gcctgtggat aagaaaatgc gcgttaaaac gcgcaaattt tcattcgaga ttgagcgaca
     1681 ccgataattt atcgtacgaa gtaggcaatc ccgccgacgc cgatcagctc ccgcgataaa
     1741 gcgccgcact ggccggcgtg gacaccgccg gacgggccgg gccaccgctt gcacccttcg
     1801 ccgctttcgc actattggac gacgaagacg gagacgacgc agccgcgggg ttcgcgaccc
     1861 ccggttccat atacccgggt gcacccttcg cattttgctt ctgtcccggc ggcggtgcgg
     1921 atggcgcggt gcgcatgtcg gcaagcattt gcgtgcacgg cagcggtttg ttgttactcg
     1981 gtgcgatcaa cgggatcagc
//
LOCUS       DATGBK010001237         2054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_107429, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001237 DATGBK010000000
VERSION     DATGBK010001237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107429"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..>2054
                     /gene="phaC"
                     /locus_tag="VKJ77_17255"
     CDS             178..>2054
                     /gene="phaC"
                     /locus_tag="VKJ77_17255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I poly(R)-hydroxyalkanoic acid synthase"
                     /protein_id="HMC47072.1"
                     /translation="MAASRSSSSSSPGSSSSSAAKAKPDAPGAPAAPFGMPAADPAAV
                     QNMFEQWLNTWRAVADPAQWQKLAAQANRGHTESAGPASANPFAALGGFPSFPGFPGF
                     PGTTGGNSGSGGSGQLPFAMPAMPNIPTTAIAPQRLQELQSSFSRDATELIKQASEQS
                     IDLAALKDRRFSTPAWQSAPGFAFAAAWYVLNARYLQELAEAVEGDHKTRERIRFAVQ
                     QWAAAASPSNYIALNPDAQKALIESRGESLQKGMMNLLADMQRGKIQQSDESGFVVGK
                     NIATTQGSVVFENDLLQLIQYTPRTATVRERPLLIVPPCINKFYILDLQPEGSLVGHA
                     LDAGHQVFMISWRNADASIAHKTWDNYIDEGVLTPIDVVKQISGREQINTLGFCVGGT
                     MLANALAVLAARGEHPVASMTLLTAMLDFSDTGVLDVFIDEQHVKMREQTIGGKDGKA
                     PGLMRGVEFANTFSYLRPNDLVWNYVVDNYLKGRTPQAFDLLYWNSDSTNLPGPMFVW
                     YLRNTYLENRLRNPGELTTCGEQVDLSKIDVPTFLYGSREDHIVPWTAAYASAPLLSG
                     PQTFVLGASGHIAGVINPPSKNKRSFWLLDNADKTLPEDPDAWFEGATEHPGSWWPTW
                     T"
BASE COUNT          430 a          597 c          623 g          404 t
ORIGIN      
        1 cattgacacg ccttgcaccg tggagcaaga atgtttcaca aaagcgcacg gcgtagcaag
       61 gtcacatcat cgcggtcggg cgtttagcag cccggcacga caatcacgac gacgcggctc
      121 cacgtcacgc ctgcatcagc aactcagtct ctcgggacgc ttaggtaaaa cgcggatatg
      181 gctgcctcca gatcttcatc ttcatcgtca ccgggttcat caagttcatc cgcagccaag
      241 gcaaagcctg acgcaccggg tgctccggct gcgccttttg gaatgcccgc cgctgatcca
      301 gcggcagtgc aaaacatgtt cgagcaatgg ctcaacacat ggcgtgcggt agccgatccg
      361 gcccagtggc aaaagcttgc cgcccaggcg aatcggggac atacggaatc ggccggaccc
      421 gcatcggcga atccgtttgc agcgctgggt ggtttcccta gtttcccggg gtttcctggt
      481 tttccgggca ctactggcgg taacagcggg agtggaggta gtggccaatt gccgttcgcg
      541 atgcctgcga tgccgaacat tccgaccacc gctatcgcgc cgcagcgcct gcaggaactt
      601 cagtccagtt tctcgcgcga cgccacggaa ctcatcaagc aggccagtga gcaaagcatc
      661 gacctggcgg cgctgaaaga ccgccgcttc agtacgccgg cgtggcaatc cgcacccggt
      721 ttcgcatttg ccgctgcatg gtatgtgctt aacgcgcgtt atctgcagga gcttgcagaa
      781 gctgtcgagg gcgatcacaa gacccgcgaa cgaatcaggt tcgccgtaca gcagtgggca
      841 gcagcggcat cgccgagcaa ttacattgcg ttgaatccgg atgcgcagaa ggcgctgatc
      901 gagagccgtg gcgagagcct gcaaaaaggc atgatgaatc tgctcgccga catgcagcgc
      961 ggcaagatcc agcaaagcga tgaatcgggt tttgtggtcg gcaagaacat tgcgaccacg
     1021 caaggctcgg tcgtgttcga gaacgacctg ctgcaactga tccagtacac gccgcgcacc
     1081 gcgactgtga gagagcggcc gctgttgatc gtgccaccgt gcatcaacaa gttctacatc
     1141 ctcgacctgc agcctgaagg ctcgctcgtc ggccatgcgc ttgacgccgg ccatcaggtt
     1201 ttcatgatct cgtggcgcaa tgcggatgca tcgatcgcgc acaagacctg ggacaattac
     1261 atcgatgaag gcgtgcttac gcctatcgat gtagtcaagc agatcagcgg ccgcgagcag
     1321 atcaacacgc ttggcttctg cgtcggtggc acgatgctcg ccaacgctct ggctgttctg
     1381 gcggcgcgtg gggaacatcc cgttgcgtcc atgaccttgc tgaccgccat gctcgatttt
     1441 tcggacacgg gcgtgctcga tgtgtttatc gatgaacagc atgtgaagat gcgcgagcag
     1501 accattggcg gcaaggacgg caaagcgcct gggttgatgc gcggcgtcga gttcgccaac
     1561 acgttctcgt atctgcgccc gaatgatctg gtgtggaact acgtggtgga caactacctg
     1621 aagggacgca cgccacaggc gttcgacctg ctttactgga acagcgattc aaccaatctg
     1681 ccaggcccga tgttcgtctg gtatctgcgt aacacgtatc tggaaaatcg cctgcggaat
     1741 ccgggcgaac tgaccacgtg cggtgagcag gtggatttgt cgaagatcga tgtgccgacg
     1801 tttttgtatg ggtcgcgcga ggatcacatc gtgccgtgga cggcggccta tgcgtccgca
     1861 cctttgctga gcgggccgca gacgtttgtg ctcggggcat cgggacacat tgcgggcgtg
     1921 atcaatccgc catcgaagaa caagcgcagt ttctggttgc tcgacaacgc cgataaaacc
     1981 ctgcccgaag atcccgatgc atggttcgaa ggcgcgaccg aacatccggg tagctggtgg
     2041 ccgacgtgga cgaa
//
LOCUS       DATGBK010001238         2549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_153545, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001238 DATGBK010000000
VERSION     DATGBK010001238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153545"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..176
                     /locus_tag="VKJ77_17260"
     CDS             <1..176
                     /locus_tag="VKJ77_17260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008333452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC47073.1"
                     /translation="AKDGMTMLLVTHEMAIAKRMADRIIYMHQGKVWEVGSGDMLDSP
                     QTPELRTFLNNGL"
     gene            269..1042
                     /locus_tag="VKJ77_17265"
     CDS             269..1042
                     /locus_tag="VKJ77_17265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017232989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47074.1"
                     /translation="MRGCVAALLLAGVAHSAMADQLDDIKKAGKIRVAIAMGTPLFSY
                     ADANLQPAGSDVDTAAALAKDLGVKLELVQITNAARVPTLQAKRADLVIADLSITPER
                     AKVVDFSIPYAVITIIVGGTKNESVKNYDDLNGKTIGLTRATVNDSITTQLAKGAQIQ
                     RYEDDATLITSVVTGQVDIFSSTPSNLAEMVKRAPNRNLELKFPQKDFDLGIAMNKDE
                     PKLKEWVNNWVSTNQKNGTLNTIYKKYHGRDLPASVTKG"
     gene            complement(1124..2020)
                     /locus_tag="VKJ77_17270"
     CDS             complement(1124..2020)
                     /locus_tag="VKJ77_17270"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008679 - 2-hydroxy-3-oxopropionate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0019580 - galactarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HMC47075.1"
                     /translation="MQKAGFIGLGIMGKPMAENLIKNGVALAAFTRSGVPDTLTQAGA
                     VACDSPAALARQADVIFVMVPDTPDVERVLFGENGVVAALREGQVVVDMSSISPIATR
                     EFAAKVRERGADYLDAPVSGGEVGAKAASLTIMVGGSQATFDSVKPLFDMMGKNVSLI
                     GEVGAGQVCKLANQVIVAATIEAVGEALLLASKAGVDAEKVRTALMGGFASSRILEVH
                     GERMTKRTFNPGFRIELHQKDLNLALSTAQALGVSLPNTATCQALFNACAAHGGKAWD
                     HSGMVRALEYLANHEIGQTPAA"
     gene            complement(2076..>2549)
                     /locus_tag="VKJ77_17275"
     CDS             complement(2076..>2549)
                     /locus_tag="VKJ77_17275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HMC47076.1"
                     /translation="DSAADAARAVAATRYPPQGIRGVSVGHRGNRYGTVSDYLSTAND
                     NICVVVQIESRTAVDAIDEILAVEGVDAVFLGPSDLAASYGHIGNPNHPDVQQAIAHV
                     FERARAAGKASGTLAPVQADAERYLSMGCQVIAVCADMGLLRNAAQAVQKHFMQK"
BASE COUNT          507 a          781 c          774 g          487 t
ORIGIN      
        1 tggcgaagga cggcatgacg atgttgctgg tcacgcacga gatggccatc gccaagcgca
       61 tggctgaccg gatcatttac atgcatcagg ggaaggtgtg ggaggtgggt agcggcgaca
      121 tgctcgactc gccgcagacg cccgagttgc gtacattcct gaacaacggc ttatagcctg
      181 tggccgttgg cctgtagtcc aggcccgaag aagatctttt gaaccgacca taaaaatgga
      241 gactgatttg aagaccaatc gattcatcat gcgcggctgc gtggccgctt tgttgctcgc
      301 cggcgtagcg cacagcgcga tggccgacca gctcgacgac atcaagaagg caggcaagat
      361 ccgcgtggcg attgcgatgg gcacgccgct cttcagctac gccgatgcca acctccagcc
      421 tgcggggtct gatgtggaca cggctgcggc gcttgccaag gacctcggcg tgaagctcga
      481 acttgtgcag atcacgaatg cggcgcgtgt gccgaccttg caggccaagc gcgcggatct
      541 ggtgatagca gatctctcga tcacgcccga gcgtgcaaag gtggttgatt tctcgattcc
      601 ctatgcggtc atcaccatca tcgtaggcgg gacgaaaaat gagagcgtca agaattacga
      661 tgacctgaac ggcaagacaa tcggcctcac gcgtgcgacc gtcaatgact ccatcacgac
      721 gcaattggcg aagggggcgc agatccagcg ctatgaagac gacgccaccc tgatcacctc
      781 ggtggtgacg ggacaggtcg acatcttctc cagcacgccg tcgaacctgg ccgagatggt
      841 caagcgcgcg ccgaatcgca atctggaact gaagttcccg cagaaggatt tcgacctggg
      901 cattgcgatg aacaaggacg agccgaagct caaggagtgg gtcaataact gggtgagcac
      961 gaaccagaaa aacggcacgc tcaacacgat ctacaagaag tatcacggcc gcgatttgcc
     1021 cgcgagcgtg acgaagggtt aagcgaagcg ttaagcctgc atgatgtgaa aaagggcatc
     1081 gcgatgttga tcgcgatgcc cttttatttg gcgggccgga gaatcaggcc gccggcgtct
     1141 gaccgatctc gtggttggcc aggtactcca gtgcgcggac cattcccgag tgatcccatg
     1201 ccttgccgcc gtgcgccgcg caagcgttga acagtgcctg gcacgtcgcg gtgttgggca
     1261 gcgacacccc aagcgcttgc gccgtcgaga gcgcgagatt caaatccttc tgatgcagtt
     1321 caatgcgaaa gcccggattg aacgtgcgtt tggtcatgcg ttcgccgtgc acttccagaa
     1381 tgcgcgacga tgcgaaaccg cccatcaatg cggtacgcac tttctccgcg tcaacgccgg
     1441 ctttggacgc cagcaacaac gcttcgccga ccgcttcgat cgtcgccgcg actatcactt
     1501 ggttcgccag cttgcagacc tgtcccgcgc cgacttcgcc gatcagcgag acgtttttgc
     1561 ccatcatgtc gaacagcggt ttcacgctgt cgaaggtggc ttgcgagccg ccgaccatga
     1621 tcgtgagcga cgcggctttg gctccaactt cgccaccgga aacaggcgcg tccagatagt
     1681 ccgcgccgcg ttcgcgcacc ttcgctgcga actcgcgagt tgcgatgggc gagatcgagc
     1741 tcatgtccac cacgacctgg ccttcgcgca gcgcggcgac cacgccgttc tcgccgaaca
     1801 gcacacgttc cacgtccggc gtgtccggca ccatgacgaa gatcacatcg gcttggcgcg
     1861 cgagcgcggc cgggctgtcg cacgcgaccg cgccggcctg ggtcagcgtg tccggtacgc
     1921 cgctgcgcgt aaacgccgcc agcgccacgc cgttcttgat gaggttctct gccatgggct
     1981 tgcccatgat gccaagaccg atgaagcctg ctttttgcat gtcactctcc acaagttgtc
     2041 tgggtgcgtc cggctaccgt ccacgtttag tcctgctact tctgcatgaa gtgtttttgc
     2101 acggcttgcg ccgcgttcct gagaaggccc atgtcggcac agaccgcgat cacctggcag
     2161 cccatcgaaa gataccgttc cgcatcggct tgcacgggcg ccagcgtgcc gctcgctttg
     2221 ccagcggcac gggcgcgctc gaagacgtgt gcgatggcct gctgcacgtc cggatgattc
     2281 ggattaccga tatgtccata cgatgccgcc agatccgacg ggccgaggaa tacggcgtca
     2341 acgccttcga cggcgaggat ctcatcgata gcatcaaccg ccgtccggct ttcgatctgc
     2401 accacgacgc aaatgttgtc gttcgcggtg cttaagtagt cgcttacggt cccgtaacga
     2461 ttcccgcgat gacccaccga taccccgcga atcccttggg gcggatagcg ggtggctgcg
     2521 acggcgcgag cggcgtcggc agcgctgtc
//
LOCUS       DATGBK010001239         1649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_246153, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001239 DATGBK010000000
VERSION     DATGBK010001239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246153"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..205)
                     /locus_tag="VKJ77_17280"
     CDS             complement(<1..205)
                     /locus_tag="VKJ77_17280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47077.1"
                     /translation="MAAVGSAYPASPTVLQARTSWIGNTFGFGDGTLAQINITAIAVM
                     PDGRVYTDAPWDESGAEVSVYKDG"
     gene            complement(736..1161)
                     /locus_tag="VKJ77_17285"
     CDS             complement(736..1161)
                     /locus_tag="VKJ77_17285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47078.1"
                     /translation="MSFIALDICGGRFAKGCRIKGMILHALSGDASYLPISNIIAAER
                     WGSSRNGVTHEYVQFRSAPVLRGFPAFCASLFRIDLFLDFITRPFLQEGGTPGVTGAG
                     RDVSSINCGMPMRDRRTPAIPVSTPIAAWRSVSRGLRAA"
     gene            1151..>1649
                     /locus_tag="VKJ77_17290"
     CDS             1151..>1649
                     /locus_tag="VKJ77_17290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011658391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HMC47079.1"
                     /translation="MNDIKHPDGGERRRALITGLSGFTGRHMAARLLDEGYDVWGTTS
                     PASEPDVPGTTGVPVNLLDLDAVRACVSDAQPDVVVHLAGLAHVTGNPPTQSYLVNIM
                     GSRNLLDALSQLDKKPRAVLMASTSNVYGNTNVEIIDENVPLNPGNDYAVSKLAMENM
                     ARLWLD"
BASE COUNT          393 a          486 c          451 g          319 t
ORIGIN      
        1 tgccgtcctt gtagacgctc acttccgcgc cgctttcatc ccatggcgcg tcggtgtaca
       61 cgcggccgtc gggcatgacg gcaatcgcag taatgttgat ctgcgccaac gtgccatcgc
      121 cgaaaccgaa ggtgttgcca atccacgatg tacgcgcctg cagcaccgtg ggcgacgccg
      181 gatacgcgga tcccaccgca gccagaccga gcgctcccac aaccagaaaa cgtgatgcca
      241 gaaacgaaaa acacgaaaag cgcgaaaaac gatgcaagag gttttctccg tctgagagcg
      301 gcccgctctg ctctccatcg gtcgacggca cagtagaggc gtcacggccg ttactcgggt
      361 gagccaagac taccgttcaa atattgcaaa aaaatctgaa ataaatgcgg tgcagcgctg
      421 gaccaccagt ggcgaacaaa ccacaaaatg cgatcaatta ccgttagaaa cgacttttaa
      481 acgccttccc cgcgctgcat gaccagagga taagaagccg gagcctttgt cggcgcgccg
      541 ccagagcaac gattgacttt cacgctgact tatttcattc aaaaaaatgt ttcgaaaagt
      601 aatagatccg acgtctttcc ggcctcttcg cggacacttc cggaaatact ttttaacgtg
      661 tgaccttcga caatcgaata ttttccggtt tgttctttca tagaataagc aaagcgtaat
      721 gttcggctgt cggactcaag ccgcgcgcag tccgcgggat acgcttcgcc acgccgcgat
      781 cggggtcgag acaggaattg ctggtgtccg acgatcgcgc atgggcattc cgcaattaat
      841 tgacgatacg tcacgtccag cgccggtcac gccgggtgtt ccgccctctt gaaggaaggg
      901 ccgcgtgata aaatccagaa ataaatcaat gcggaaaagg ctggcgcaga acgctgggaa
      961 gccccgtagt acgggcgccg agcggaactg aacatactca tgcgtaacgc cgtttcgtga
     1021 tgaaccccat cgttcggcgg ctatgatgtt ggaaatcggc aggtaactgg cgtcaccgga
     1081 caaggcatgc agaatcattc ccttaatgcg gcaacccttt gcgaaacggc cgccgcagat
     1141 atcaagcgca atgaacgaca taaaacatcc tgacggcggc gaacgccgtc gcgctctcat
     1201 cacgggtctt tcgggcttta ccggacgcca catggccgcg cggctgctgg acgaaggtta
     1261 cgacgtatgg ggcacaactt cgcccgcgtc cgagcccgac gtgcccggca cgaccggcgt
     1321 tccggtcaac ttgcttgatc tcgacgcagt gcgcgcgtgc gtgagcgacg cccagcccga
     1381 tgtcgtcgtt catcttgccg gtctcgcgca cgtcacgggc aacccgccca cacaaagtta
     1441 tctagtcaac atcatgggct cgcgcaatct gctcgacgcg ttgtcgcagc tcgacaagaa
     1501 accgcgtgcc gtgttgatgg cgagtacatc gaatgtgtat ggcaatacga acgtggagat
     1561 catcgacgaa aacgtgccgc tgaatcccgg caacgactat gccgtcagca agctcgccat
     1621 ggagaacatg gcgcgcttgt ggctcgacc
//
LOCUS       DATGBK010001240         3326 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_292800, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001240 DATGBK010000000
VERSION     DATGBK010001240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3326
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_292800"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..456)
                     /locus_tag="VKJ77_17295"
     CDS             complement(<1..456)
                     /locus_tag="VKJ77_17295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009911299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HMC47080.1"
                     /translation="MTRDPRITLNARQQELLDWVQRDGFVTVEDLATHFDVTPQTIRR
                     DVNWLSDMNLLRRYHGGASLPTSSENVSYTARQRMFHDEKRRIAALVAQHIPDQASLF
                     INLGTTTEEVARALNRHRGLHVITNNLNVASMMSGYPECEVLITGGIVRP"
     gene            741..1031
                     /locus_tag="VKJ77_17300"
     CDS             741..1031
                     /locus_tag="VKJ77_17300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47081.1"
                     /translation="MSAPTVRIARFASCAATHQDGKIDGVELECGLAAWTLSRCMRIQ
                     YEKSVDENAIAESSFSGLPKCVCKRAGIKPDMRYRNVMRRGTIYADLCCIRN"
     gene            1209..2036
                     /locus_tag="VKJ77_17305"
     CDS             1209..2036
                     /locus_tag="VKJ77_17305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HMC47082.1"
                     /translation="MHTDSTHVMPWRIEDIDLARIDRRKAASNEHLLLLLCAASFIES
                     GTDLYTSNLSTYFNDDPEVSDWLNNEWEPEEMQHGRALKTYIHHVWPEFDWDTAFKNF
                     FAEYSLTCSVEDFEKTRALEMVARCVVETGTATLYRAINECSDEPVLKQLTDNIRTDE
                     VRHYKHFFRFFKKYNKIEGNGRFAVLGALLRRVMEIKNEDSEIALRHVFAIRYPERAN
                     DTAHNRELAARVNALVRRNLSADMCVKMLLKPLDLPARIQPSVHYPLAKFTQHVFFR"
     gene            2123..2656
                     /locus_tag="VKJ77_17310"
     CDS             2123..2656
                     /locus_tag="VKJ77_17310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47083.1"
                     /translation="MTDSTASGVSGSSAAPGLEHGTFDEWPAELRTLFDGTSIETKTG
                     FTASLLAADEGRVRTSLLSVGELFAPDPGTLCFSLWPQSRAARLVSKTGCATLTFVFD
                     EAFFQVQLQGRIAPLEGSSVTCFIATIESGEWQKVPYARLVQGIGFEFAQGQGDAVLA
                     RWREQIDVLKRAASAAA"
     gene            complement(2892..>3326)
                     /locus_tag="VKJ77_17315"
     CDS             complement(2892..>3326)
                     /locus_tag="VKJ77_17315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA helicase"
                     /protein_id="HMC47084.1"
                     /translation="LKDIERLIKRPIPQEVIAGFEPDLTQKPEPILRRGQGGGGARQG
                     QGSPRHGAPKQSNGGGRSSAKPAGNGNGGGGNGGNGGNGGGYGSRSPKPVAAKTGGNG
                     GAPRKPEGSRPGGAALLGGKPRSEGGGGAGRRDTPRTGQRGR"
BASE COUNT          637 a          941 c         1015 g          733 t
ORIGIN      
        1 aggacgcaca atgccacctg tgatcagcac ctcgcattcg gggtagccgc tcatcatgct
       61 cgccacgttg aggttgttcg tgatcacgtg caagccgcga tgccggttca gcgcacgggc
      121 gacttcctcg gtcgtcgtgc ccaagttgat gaagagcgac gcctgatcgg gaatgtgctg
      181 agcgaccagc gcggctatgc gacgcttttc gtcgtggaac atgcgctggc gcgccgtgta
      241 tgagacgttc tccgaactgg ttgggaggct cgcgccgccg tgatagcggc gcagcaggtt
      301 catgtcggag agccagttga cgtcgcggcg aatggtttgc ggcgtgacgt cgaaatgcgt
      361 ggccaggtcc tctaccgtca cgaagccatc gcgttgcacc cagtcgagca gctcttgctg
      421 tcgtgcgttc aaggtgatgc ggggatctcg tgtcatggcg tcgaagagtg cgctttattg
      481 tcttgaggtg gcccgtattg taagggaaag gcccggcagg cccgcaatgc ttgatcaccc
      541 gccttgcctt tggatttcgc tgtccaattg ggcacgatgc aggcgcgtca acgagcgtct
      601 tggcggggca gtttacggct cggatgccac attgagagcg acaagttagt tacgacgcgt
      661 tacgtcgtgc ggcaacggcg aacgagttgg gatgaagccg ctcccagatg attcacacgt
      721 atacatatcc gcatgtcccg atgtccgcac cgaccgtacg gattgcacgc ttcgcgtcct
      781 gcgcggcaac tcatcaggat ggcaaaattg atggtgtcga gcttgaatgc ggcttagcgg
      841 cctggactct atcgcgttgt atgcggattc aatatgaaaa atcggtcgac gaaaacgcca
      901 tcgccgaatc gtcttttagt ggcttgccga aatgtgtatg taagcgggcg ggaatcaagc
      961 ctgacatgcg ttatcgcaac gtgatgcggc gcggtacgat ttatgctgat ttgtgctgta
     1021 tccggaactg agatgtggtt ttgacggtct gtcttcgagt ctgcagcttc gttgcaaccc
     1081 ggctaagatg caggcaccaa gtctttaacc acatgaggac gccgcgacta tacggtcacg
     1141 gcgtcgcctg attttcggcc ggtttggctg acggcgcgtt cagtacagct tttgggagcg
     1201 cgatttttat gcacactgat agtacccatg tgatgccctg gcggatcgaa gatatcgacc
     1261 tggcccggat cgaccggcgt aaagcggcat cgaatgaaca ccttctcttg ttgctgtgcg
     1321 cggcttcgtt cattgagagc gggaccgatc tttatacaag caacttgagc acttatttca
     1381 acgacgaccc tgaagtttcc gactggctca acaatgagtg ggaaccggaa gaaatgcagc
     1441 acggccgcgc gttgaaaacg tatattcatc atgtgtggcc cgagttcgac tgggacacgg
     1501 cattcaagaa tttcttcgcc gaatactcgc tgacgtgttc agtcgaggac ttcgaaaaaa
     1561 cgcgtgcgct ggaaatggtc gcgcgctgcg tcgttgaaac cgggacggcc acgctgtatc
     1621 gggcaatcaa tgagtgctcg gacgaacccg tgctcaagca actcaccgac aacatccgca
     1681 ccgacgaagt ccggcattac aagcacttct tccgcttctt caagaagtac aacaagatcg
     1741 agggcaatgg ccgcttcgcc gttctcggcg cattgctgcg tcgtgtaatg gaaatcaaga
     1801 atgaagattc cgagatcgcg ctgcgccatg tatttgccat ccgctatccg gaacgtgcaa
     1861 atgacaccgc gcacaacagg gagttggcag cgcgggtgaa tgcgttggtc cggcggaatt
     1921 tgtcggctga tatgtgcgtg aaaatgctgc tcaagccact cgatctgccg gcccgaattc
     1981 agcctagcgt gcactatccg ctcgcgaagt tcacgcaaca cgtattcttc cgataggtca
     2041 gccgacgttt gcactgaacg gttcggtacg ctttaatcga tggcccgctt tcgcgggcca
     2101 tcgtcttttc acggagatcc gcatgaccga ttccactgcg tccggtgtgt ctggttcgtc
     2161 cgctgccccc ggtctcgagc acggcacgtt tgacgaatgg cctgccgaat tgcgaacctt
     2221 gttcgacggc acctcgatcg aaacgaaaac gggcttcacg gcgtcgttgc tcgcagccga
     2281 tgaaggccgt gtgcggacgt cgctgttgag cgttggcgag ttgttcgcgc cggatccggg
     2341 cacgttatgt ttttcgttat ggccgcagtc gcgggcggcg cggttggtat cgaagacggg
     2401 ttgcgccacg ctgactttcg tctttgatga agcgtttttc caggtgcagc ttcaggggcg
     2461 aatcgcgccg ttggagggtt cgtcggtcac gtgttttatc gcgacgatag aaagcgggga
     2521 atggcagaaa gtgccctatg cgcggctcgt gcagggcatt ggattcgagt ttgcgcaggg
     2581 acagggggat gcggtgctgg cgcgctggcg agaacagatc gatgtgctga agcgtgcggc
     2641 gagcgccgct gcgtgaaatg aaaaaagcgg agccgaggct ccgcttctta tcgggtgcag
     2701 tgtggggcgg ttacgctaca cagagaaggt tgccacctga ctttccgcca gcaaagcgag
     2761 gcttgacgca gcatcgcttc atgcagcaag gcttgaagca gcaaggcttg cgcaccttcc
     2821 cgcccaaagc ggccgctacg cgcagaagaa ggcgcaggcg agctttccac ccgcaccctc
     2881 aatcacgcta tttaacgccc gcgttgtccg gtgcggggcg tatcgcgtcg acctgcaccg
     2941 ccgccgcctt cgctgcgcgg cttgccgccg agcagcgcag cgccacctgg ccgtgagcct
     3001 tcgggtttgc gcggcgcgcc gccattgcca ccggttttcg ccgcaacagg cttcggcgag
     3061 cgcgaaccgt agccaccgcc attgccgcca ttgccgccgt ttccgccacc gccattaccg
     3121 ttaccagccg gcttggccga cgatcgaccg ccgccgttcg attgcttcgg cgcaccatga
     3181 cgcggcgaac cttgaccttg ccttgcaccg ccgccgcctt ggccgcgtcg gagaattggt
     3241 tccggcttct gcgtcagatc cggttcaaaa cccgcgatca cttcctgcgg aatcggccgc
     3301 ttgatcaggc gttcgatgtc tttcag
//
LOCUS       DATGBK010001241         2186 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_107446, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001241 DATGBK010000000
VERSION     DATGBK010001241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107446"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..721
                     /locus_tag="VKJ77_17320"
     CDS             <1..721
                     /locus_tag="VKJ77_17320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dienelactone hydrolase"
                     /protein_id="HMC47085.1"
                     /translation="HYDTALALAHAGFVVASVSHVGDTFNDQSRVLQLWRRPAQLHQL
                     VDYMLDEWPSHALLDPGRVGAFGFSNGGFTVLVAAGGTPDLSKIAPYCEAHPDHDLCE
                     TLKHAGVDPGAGTEIPDGAWIHDPRIKAVVIAAPAFGFAFGRAGLSHVRAPVQLWRAA
                     DDHHQPHPYYEEAVRADLPRAPDYHVVANAGHYDFLPPCSARLSRKMPEVCNSEPGFD
                     RAAFHEQFNAEVVRFFQARLR"
     gene            complement(942..>2186)
                     /locus_tag="VKJ77_17325"
     CDS             complement(942..>2186)
                     /locus_tag="VKJ77_17325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC47086.1"
                     /translation="CAVWRIAPNSFTIRSHNMIAQKNGTSRAARAMRQTTIAALAVLA
                     VLAGIVPGSAQSQTIKIGVPVPLSGSSANAGTDIVNGAKLAAARINAAGGVLGKQIEL
                     VPEDDACDAQTAVQAAQKLVDAGVVAVAGGYCSSAALPELSTFHRAGIPYVLDASSNP
                     KLTEMGYNDVFRAIGRDDEQGPFAADFIKNSLHAKRAAVIHDNTTYAKGLADNTVEAL
                     KKDGVDVVYSDAITPGQMDYSPILTHVASLNPDVIYYTGYFSEAGLIVKEARQLGLKM
                     TLMGGDGTNDPTLMKTAGPAADGLIITTEPLAQFLSGAHSFVDNYTKAYGQGPGAYSV
                     YEYDAVGVTAKAIADSKSATPAAIAAALHKITNYPGATGTIGFNPKGDRIEVGYITII
                     VKGDSFAPYQKQDAGGHWMAMK"
BASE COUNT          394 a          669 c          672 g          451 t
ORIGIN      
        1 ccattacgac acggcactcg ccttggctca cgcgggcttc gtggtggcgt cggttagtca
       61 cgtcggcgat acgttcaatg accagagccg ggtcttgcaa ttgtggcggc gtcctgcaca
      121 gcttcatcaa ctagtggact acatgcttga cgaatggcct tcgcatgcgc tgttggatcc
      181 gggccgcgtc ggcgcgtttg gtttttccaa cggcggattc acggtgctcg tggccgcagg
      241 tggaacgccg gacctttcga agatcgcccc gtattgcgag gcccacccgg atcatgacct
      301 gtgcgagacc ctgaagcatg ccggcgtgga tccaggcgcc ggcacggaga ttcctgacgg
      361 cgcgtggatc cacgatccgc gtatcaaggc cgtagtcatc gcggcaccag cgttcggctt
      421 cgcctttggc cgcgcgggat taagccacgt gcgcgctccg gtccagctat ggcgagcagc
      481 cgacgatcat catcagccgc atccctacta tgaggaggcg gtacgcgccg acctgcctcg
      541 agcacccgac tatcacgtgg tcgctaacgc cggtcactac gatttcctgc ctccctgtag
      601 cgcgcgcctg tcccggaaga tgccggaggt ctgcaacagc gaaccgggct tcgaccgcgc
      661 agcgttccat gaacaattca acgcggaagt ggtgcggttt tttcaggcaa ggctgcgata
      721 gatgctcact gactttcacc agagcagttt aaaggcaacg actattgcga gaaagcacag
      781 tagccagaga atgacgggac cggaggcacc attaaagctc actcctgcca ccttgaattc
      841 aattcttccg taactggcgg gaagcaacag aacaatgaga taagccaaac cggcggccaa
      901 cggtgaagtt gctcatggcg gcgcgcgggg cgctattcag cctatttcat cgccatccag
      961 tgtccgcctg catcttgctt ctggtagggc gcgaaactgt cgcccttcac gatgatggtg
     1021 atatacccca cctcgatgcg gtcacctttc gggttaaagc cgatcgtccc ggttgccccc
     1081 ggatagttcg tgatcttgtg cagggccgcg gcgatcgcgg cgggcgtcgc tgacttgctg
     1141 tcggcgatcg ctttcgccgt gacgccgaca gcgtcgtatt cgtaaaccga atacgctccc
     1201 ggcccttgcc cgtaggcctt cgtatagttg tcgacgaagc tgtgcgcgcc gctcaggaac
     1261 tgcgcgagcg gttccgtggt gataatcaag ccgtcggccg ccggaccggc ggtcttcatc
     1321 agcgtggggt cgttggtgcc gtcgccgccc atcaaggtca tcttcaggcc cagttggcgc
     1381 gcctccttca cgatcagacc ggcttcggag aagtaaccgg tgtagtagat cacgtctgga
     1441 ttcagcgagg cgacgtgggt caggattggt gagtagtcca tctgaccggg tgtgatcgca
     1501 tcgctataga caacgtcgac gccgtccttt ttcagggctt ccacggtgtt gtcggcgaga
     1561 cccttggcat aggtcgtgtt gtcgtggatc accgctgccc gcttcgcatg gagcgaattc
     1621 ttgatgaaat cggcggcgaa cggaccttgc tcgtcgtcac ggccaatcgc acggaacacg
     1681 tcgttgtagc ccatctcggt cagcttggga ttcgacgacg catccagcac atacggaatg
     1741 cccgcgcggt gaaaggtcga caattccggc agcgccgcgc tcgagcagta gccgccagct
     1801 accgcaacga cccccgcatc gacgagcttc tgtgccgctt gcacggcggt ctgcgcgtcg
     1861 caggcgtcgt cctccggcac cagttcgatc tgcttgccga gcacgccgcc agccgcattg
     1921 atgcgggcgg cggcaagctt ggcgccgttg acgatgtctg taccggcgtt agcactgcta
     1981 cccgatagcg gcacaggtac gccgattttg atggtctggc tttgcgccga accggggacg
     2041 atgccggcga gcacggccag aacggccagg gccgcgattg tcgtttgccg catggcgcgc
     2101 gcggcgcgcg atgtgccatt cttctgagca atcatgttgt gactccttat tgtgaaagag
     2161 ttcggagcga tccgccacac ggcgca
//
LOCUS       DATGBK010001242         1907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_338729, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001242 DATGBK010000000
VERSION     DATGBK010001242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338729"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..365)
                     /locus_tag="VKJ77_17330"
     CDS             complement(<1..365)
                     /locus_tag="VKJ77_17330"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004371 - glycerone kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HMC47087.1"
                     /translation="MKKIINQPENFVDEVIDALLLAHPGWIKAATADRRALVRADAPK
                     QGRVGIVTGGGSGHMPGFLGYVGEGLCAGVAVGNVFSSPSSEQIFEATKAVNGGAGVL
                     YVYGNYGGDVFNFDLASDMA"
     gene            complement(463..1464)
                     /locus_tag="VKJ77_17335"
     CDS             complement(463..1464)
                     /locus_tag="VKJ77_17335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47088.1"
                     /translation="MTSTAANQADSEARSRRIIRQLRTGLGPLLAALILICIGLSIAS
                     PEFLTTSTLTNIMVQVSVVGIAAVGGTFVIITSGIDLSVGSLVALSGMVAATVMAGSS
                     PDNVALGIAGLCVALVVGALVGALNGLSVAWLRLVPFIVTLAMMAMARGLTLAISDGR
                     TKFDFPNAFTAFGAKTLAGLPAPMIVMLVVFVIGHVLLRKTTFGHQVFAVGGNKEAAR
                     LAGIPVNRVIFLTYTLAGATAAVAGIVLAGRLNSALPSAANGLELQVIAGVVIGGTSL
                     AGGRGSIVGTFIGVVLIGVINVGLSLLGVNPFWTQFIQGGVIFAAVLLDAVSQRRKL"
     gene            complement(1461..>1907)
                     /locus_tag="VKJ77_17340"
     CDS             complement(1461..>1907)
                     /locus_tag="VKJ77_17340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47089.1"
                     /translation="ENVVLSSLLALATGGFVSNTKKRKLAQEASTRFGVRASSVMQIT
                     GNLSGGNQQKVILGRATATQPAVIMLDEPTRGIDVGAKTEIYAHMVSMARAGAAVIMV
                     SSELPELLGMSDRVLVMYRGNIVTEISRDKADSETVIQWATTGVGA"
BASE COUNT          389 a          647 c          536 g          335 t
ORIGIN      
        1 gccatgtcgg acgcaaggtc gaagttgaag acatcgccgc catagttgcc atacacatac
       61 agcacgcccg cgccgccgtt cacggccttg gtggcctcga agatctgctc ggacgacggc
      121 gatgaaaaca cattgccaac ggccacgcct gcgcacaagc cctcgcccac gtaccccagg
      181 aaacccggca tatgtccaga gccgcccccg gtcacaatgc cgacgcggcc ttgcttgggc
      241 gcgtcggcgc gcaccagcgc gcggcggtcc gcggtggccg ccttgatcca tccggggtgc
      301 gcgagcagca atgcgtcgat cacctcatcg acaaaattct caggctgatt gatgatcttt
      361 ttcacgggtc ttgtctcctt tatgcgcggt tttatccggt tgattccgca atgatttcgt
      421 ctggccgcgc agactttcag tcgtcatttc tacggaccgg attcagagct tgcgccgctg
      481 gctgacggcg tcgagcaaca ccgctgcgaa gatcacgccg ccctgaatga attgcgtcca
      541 gaacgggttc acgccaagca gtgacaagcc gacattgatc acgccgatca gcaccacgcc
      601 aatgaaggtc ccgacaatcg atccacgacc gccggcaagc gatgtgccgc caatcacaac
      661 cccggcaatc acctgcagtt ccaggccatt tgcagccgat ggcagcgccg agttgagccg
      721 ccccgccagc acgatccctg cgaccgccgc cgtcgctccg gcgagcgtat aggtgaggaa
      781 gatcacgcgg ttcacgggga tacccgcaag ccgggccgcc tccttgttgc cgccgaccgc
      841 gaacacctga tgcccgaagg tcgtcttgcg cagcagcacg tgaccaatca cgaataccac
      901 cagcatcacg atcatgggtg caggcaagcc ggccagcgtc ttggcgccga atgcagtgaa
      961 cgcgttaggg aaatcgaact tggtccggcc atcggagatc gcgagtgtta gtccccgcgc
     1021 catggccatc atcgccagcg tgacgatgaa cggcaccagc ctgagccacg cgacggacaa
     1081 accgttcagc gcgccaacca gggcgcccac caccaatgcc acgcacagcc ccgcgatacc
     1141 aagcgccacg ttatccgggc tcgatcccgc catcacggtc gccgcgacca tgccgctcaa
     1201 cgcgaccagc gagcccacgg acaggtcgat gcccgatgta atgatcacga aggtgccgcc
     1261 gaccgctgca atgccgacca cggacacttg caccatgatg ttggtgagcg tgctggtggt
     1321 caggaactcg ggtgacgcaa tcgacaagcc gatgcagatc aggatcaacg ctgccagcaa
     1381 cggcccgaga cccgtccgta attgccggat gatgcggcgg gagcgcgctt ccgaatccgc
     1441 ctgattcgct gccgtggaag tcatgcccct actcctgttg tagcccactg gataaccgtt
     1501 tctgaatctg ccttgtcgcg ggaaatttcg gtgacgatat tgccccggta catcacgagg
     1561 acccgatccg acatgcccag cagttccggc aattccgaac tgaccatgat gacggcagcc
     1621 cctgcacgcg ccatcgaaac catatgcgcg tagatctcgg tcttcgcgcc cacatcgata
     1681 ccgcgcgtgg gttcgtccag catgatcacc gccggctgcg tcgccgtcgc gcggccgaga
     1741 atgaccttct gctgattgcc gcccgacaaa ttgccggtga tctgcatgac cgacgacgcg
     1801 cgtacaccaa aacgcgtgct tgcttcctgc gcgagcttgc gctttttcgt gttgctgacg
     1861 aatccccccg tcgcgagcgc aagcaggctg gataacacga cgttttc
//
LOCUS       DATGBK010001243         1683 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176733, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001243 DATGBK010000000
VERSION     DATGBK010001243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176733"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..368)
                     /locus_tag="VKJ77_17345"
                     /pseudo
     CDS             complement(1..368)
                     /locus_tag="VKJ77_17345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611612.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            441..1507
                     /locus_tag="VKJ77_17350"
     CDS             join(441..930,930..1507)
                     /locus_tag="VKJ77_17350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611116.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HMC47090.1"
                     /translation="MGAAVSITRLDLTASELRRAASGEKDSSAARRILALALVLDGVD
                     RKTAAETCGMDRQTLRDWVHRYNAAGLAGLRNLKSPGPGSKLTARQQAELAELVEAGP
                     DPAVHGVVRWRRVDLRDELQRRFGVTLHERSVGKVLAKLGYRKLSVRPRHPKADEEAQ
                     ETFKKNFAATVTAQIPDRAKGKPIEIWFQDEARIGQQGTLTRVWAKRGTRPRAPHDQR
                     YDWAYLFGAACPQRRVAAGLVMPAANAETMSLHLTAIGNKVAAGSHAALVLDGAGYHI
                     AAALTIPENVTLVRLPPYAPELNPIENVWEYLRGNKLAITVFDDYDDIVDKTCDAWNF
                     FADDPMRIASITTRTWATVNK"
BASE COUNT          342 a          522 c          518 g          301 t
ORIGIN      
        1 tcgccgtcat accctttatc ggcgaggagc gcgctcatgg gcggcgcgac cgccagaaca
       61 tcggccgccg ccacgatatc ggcatcctgg cctggggtca gatgcaggac gacgggccgg
      121 cagagcggat cgctcagcgc atggattttt gtcgtgcggc ctccgcgcga gcggccaatt
      181 gcttgattgt gctcccccct tttccgccgg aggcacaccg gtgagctttg atcgatgtcg
      241 agtcgaggga aagcacgacg gcgtcttcgc caggcttggc cagcacttca aagattgcgc
      301 gccatcgccc gcgcttggcc caacggttga agcgattata gacggttgtg taataccaac
      361 ggcccgaaac tgtgactcat tagggattcc caaatcagtt aaactctgac tcgatgctgg
      421 ctttgagagg agcggcatcg atgggagcgg cggtatcgat cacccgactt gatctgacgg
      481 cttcggagct tcgcagggcg gcgagcggag agaaggatag ttcggcggcg cgccggatac
      541 ttgcgcttgc gctggtgctc gatggcgtgg accgcaagac ggcggccgaa acctgcggca
      601 tggaccgtca gaccttgcgg gactgggtgc atcgttacaa cgccgcggga cttgccgggc
      661 ttcgcaatct caaatcgccg ggtcctggat caaaactcac ggcgcggcag caagccgaat
      721 tggccgagct tgtcgaggcc ggccccgatc ccgcggtgca cggggtcgtg cgctggcggc
      781 gggtcgatct gcgcgacgaa ttgcagcggc gcttcggtgt cacgctccac gagcgttcgg
      841 tcgggaaggt tctggccaag ctcggttacc gcaaactgtc ggtcaggccc cgccacccaa
      901 aggctgacga agaagcccag gagacattta aaaaaacttc gccgctacag tcacggcgca
      961 aatccccgac cgcgccaaag gcaagccgat cgaaatctgg ttccaagatg aggcccggat
     1021 cggccagcag ggcacgctga cccgcgtctg ggccaagcgt ggaacgagac cccgcgcacc
     1081 gcacgaccaa cgctacgact gggcctacct gttcggcgcg gcctgtccgc aacgtcgcgt
     1141 cgcagcgggc ctggtcatgc cggcggcgaa cgccgagacc atgtcgctgc atctgactgc
     1201 tatcggcaac aaggtggcgg caggtagcca cgccgctctc gtcctcgacg gcgcaggcta
     1261 ccatattgct gccgcgctca cgatccccga aaacgtcacc cttgtgcgcc tgccacccta
     1321 tgctcccgaa ctcaacccga tcgaaaacgt ctgggaatat ctgcgcggaa acaaactcgc
     1381 gattaccgtc ttcgacgact acgacgacat cgttgataaa acctgcgacg cttggaactt
     1441 cttcgcagac gatccaatgc gcatcgcgtc aatcaccacg cgaacatggg caacagtcaa
     1501 taaatagggc cgttggtata agtgtccggc cacggctggc tggttcaagc ccgcgccata
     1561 cgcattactc ggcggcagtg aaaaatttcg ttccgtcgaa aaaacggttc ggacggttga
     1621 ataccgagat gaacatcgct ccgttgggag catgcgcgac atggatgttg ccgccgggtc
     1681 tcc
//
LOCUS       DATGBK010001244         5315 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_107485, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001244 DATGBK010000000
VERSION     DATGBK010001244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5315
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107485"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            144..1445
                     /locus_tag="VKJ77_17355"
     CDS             144..1445
                     /locus_tag="VKJ77_17355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47091.1"
                     /translation="MMFRRATTRVLLLLCAMYFITYVDRVNVSTAASQFGAELHLSHV
                     QIGFVFSAFAYPYLVFQIIGGWVGDRFGPRRTLAVCAVIWAGATIMTGLAGGFVSLIV
                     ARLLLGLGEGATFPTATRAMSNWMPADKRGFAQGTTHAASRIGNAVAPPLIVWLMIAT
                     SWRGAFIVTGIISFLWAIVWIFYFRDNPREHKSITADECATLSSFSGVKQRVPVPWRP
                     LLGRMAPVTAVYFCYGWVLWLFLGWIPQYFLHNYHMELGKSALFASGVFFAGVLGDWL
                     GGSVTDRILRRSGNLRMARNVMVGVCMFLTMLSLAPIMLVSNMSITLAAVCLSGGFFF
                     NEMTIGPMWAVPMDIAPKHAGTASGIMNSGSALAAIISPVVGGFLIDRTGNWNLPFTI
                     SMILMGVGIVLSFTMRPDRALDVVAEGAEGKEGAEPARKFV"
     gene            1493..2275
                     /locus_tag="VKJ77_17360"
     CDS             1493..2275
                     /locus_tag="VKJ77_17360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HMC47092.1"
                     /translation="MAEPSILIEREGFIATVVIDRPAKLNAMTKPLWQSLGETIDVLS
                     ADDSIRCIILRGAGEKAFSPGNDIAEFRTDRSNVEQARAYGAIMHRTLSSLGACRHPI
                     VAMIHGICVGGGLEIAAMCDLRICGESSRFGVPIKNLGLVMAHAELDALVQLAGPAIA
                     LEILLEGRIFGAQEALAKGLVTRVVADDQVTAETLATARRIAEGAPLVARWHKQFVKR
                     SMNPAPLTAEERDEGFACFGTEDFRTGYQAFLDKVKPEFKGR"
     gene            2319..3506
                     /locus_tag="VKJ77_17365"
     CDS             2319..3506
                     /locus_tag="VKJ77_17365"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC47093.1"
                     /translation="MRVIELAHIMSGPICGMMLADMGADVIKVEKIPGGDDCRRFAPI
                     LEGGESASFMIVNRNKRGVAINLKTDGGREVLRKMLATADVVTENYRRGTMEKLGMGY
                     EALKAENPGLIYCAISGFGRSGPMADKGGFDLIAQGMSGLMSMTGEPGQAPIKAGSPV
                     TDINAGILAALGICAAYAGKQKTGLGQMVDTSLFEAGLQQMYWAFANYFADGTVLPKA
                     GSANPTSAPYQAFRTRDGWVNIGAANQSNYERLVGALDIPGLDDDERFKTNAGRLTHR
                     GALVEILTARLVERTTNDWLAAFDAIGLPSGPVLGVPEAAAHEQALARGMIVETTHPV
                     AGRMRGLGLPIHFSDGLTQSPLPAPLLGQHTAEVLREYGFSDERIHALKEEGAILGSD
                     VTV"
     gene            3882..4778
                     /locus_tag="VKJ77_17370"
     CDS             3882..4778
                     /locus_tag="VKJ77_17370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HMC47094.1"
                     /translation="MPATIAQSRAVPLRSIAQILAAMFCFAVVDALAKSVSLKYPANE
                     ITFFRMIFGLLPAFAMCLQGKPLSERLRTLDFRAQTLRAITLLCALGLFFAGLPYVPL
                     SEAVAIVYSETIFVIVLAPLLLKETLRRRDASAAAIGFIGVLLVVRPSSDQTSWLGPV
                     LLVASAIFGALSILQIKRIRASNDSSVTVLYFTLIGALVSGLSLFFAWRTPTLDFLTV
                     MGLLGILAGTGQLLLTMAFRQADASALAPYNYTSIVWAAIFGYVVWGEIVGTLSLIGI
                     LLIVGSSILVAIRRKQADGPLV"
     gene            complement(4800..>5315)
                     /locus_tag="VKJ77_17375"
     CDS             complement(4800..>5315)
                     /locus_tag="VKJ77_17375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HMC47095.1"
                     /translation="GLSTAAGLAMARTLHVTLSALGVAALLRNAPWLYDGVRIAGALY
                     LAYVAIQIFRSPAFGLNNNNNMTSKTRPPLRAALSKGVLGNLLNPKALLFCSVLLPQF
                     VHPEAGAVWSQVFELGVVLVVMGALLDITLALSAVRLSGWLRSHPRAQIVQRWTFSIA
                     LLAFALRLSID"
BASE COUNT          999 a         1550 c         1626 g         1140 t
ORIGIN      
        1 accagcatgg cacgaccgcg caaacccagg attcgccccc tcgctttaac gcccattctg
       61 taaagcctta tcgaagttcc ggatgcagtt cgcttcgggc gcccgtgggc gccttgatga
      121 agcacgcact actcaaggag acgatgatgt tccgtcgagc tacgacgcgc gttctgttgc
      181 tgctgtgcgc aatgtatttc atcacctatg tcgaccgtgt caacgtcagt accgccgcct
      241 cgcagttcgg cgcggaactg catttgtcgc atgtccagat cggcttcgta ttttctgcgt
      301 ttgcctatcc gtatcttgtg ttccagatta ttggcggatg ggtgggggac cgtttcgggc
      361 cgcgtcggac gcttgccgtc tgcgccgtga tctgggcggg cgccacgatc atgaccggat
      421 tggccggcgg gtttgtatcg ctgatcgttg cgcgcttgtt gctcgggctg ggcgagggcg
      481 ccacgtttcc tactgctaca cgcgccatgt ccaactggat gccagctgac aaacgcggct
      541 tcgcgcaagg gaccacgcat gccgcgtcgc gtattggcaa tgcggtggcg ccgccgttga
      601 tcgtctggtt gatgatcgcg acgagctggc gcggtgcttt tattgtgacg gggatcatca
      661 gttttctgtg ggcgattgtc tggatcttct atttccgcga caacccccgc gagcacaaga
      721 gcattaccgc cgacgagtgc gccacgcttt cgtcgttctc cggagtcaag cagcgcgtgc
      781 cggtaccgtg gcgtccgctg cttggacgga tggcgccggt taccgccgtg tacttttgct
      841 acggctgggt gttgtggctc tttctcggct ggattccgca gtattttctc cacaactatc
      901 acatggagtt ggggaagtcg gcgctgtttg cttccggcgt tttcttcgct ggcgttcttg
      961 gtgattggct cggcggctcg gtcaccgatc gcatcctgcg acgcagcggc aacctccgca
     1021 tggctcgcaa tgtgatggtc ggtgtctgca tgttcctgac gatgctctcg cttgcgccca
     1081 tcatgctcgt ttccaacatg tcgatcacgt tggccgcggt gtgcctgagc ggcgggttct
     1141 tcttcaacga gatgacgatc ggacccatgt gggccgtgcc tatggacatc gcgccgaagc
     1201 acgccggtac cgccagcggc atcatgaatt cgggctccgc gcttgccgcg attattagtc
     1261 cagttgttgg cgggttcctg atcgacagga ccggcaactg gaacctgcct ttcacgattt
     1321 ccatgatcct gatgggcgtc ggcattgtgc tctcgttcac catgcggccg gatcgggcgc
     1381 tggacgtcgt tgctgagggc gctgaaggaa aggaaggcgc tgagccggcg aggaaatttg
     1441 tttaaaagcg tgctcgcgcc ggaagcggta atttctttct ccaggagacg atgtggctga
     1501 accatccatc ttgatcgaac gcgaggggtt tatcgcgact gttgtcatcg atcggcccgc
     1561 gaagctcaat gcgatgacca agccgctctg gcagtcgttg ggcgaaacca ttgatgtgct
     1621 ttccgccgat gactccatcc gctgcatcat cttgcgcggc gccggcgaga aagccttctc
     1681 gccgggtaac gacatagccg agttccggac cgatcgctcg aacgttgaac aagcccgtgc
     1741 ttatggggcg atcatgcatc gcacgctttc gtccctgggt gcatgcaggc atccgattgt
     1801 cgcgatgatt cacggcatct gcgtgggcgg tgggctcgag atcgcagcca tgtgcgatct
     1861 gcgcatctgc ggggaatcca gccgcttcgg cgtgccgatc aagaacctcg gcctggtgat
     1921 ggcgcacgcg gaactcgatg ccctcgtgca actcgcgggc cccgctatcg cgctcgaaat
     1981 cctgctggaa gggcgtattt tcggggcgca ggaggcacta gccaaggggc tcgtaacgcg
     2041 agtcgtagcc gacgatcagg tcaccgctga aacgctcgct accgcgcgcc ggattgccga
     2101 gggcgcgcct ttggtcgcgc gctggcacaa gcagttcgtg aagcgctcga tgaacccggc
     2161 gccactcaca gccgaggaac gtgacgaagg tttcgcgtgc ttcggcacgg aggactttcg
     2221 cacgggttat caagctttcc tcgacaaggt caaaccggaa ttcaaggggc gttgaaatgc
     2281 tcgaaacaga aacaggcagc aaaggcccgc ttagagggat gcgcgtcatc gaactggctc
     2341 acatcatgtc cggacccatc tgcggaatga tgctcgcaga catgggcgcc gatgtcatca
     2401 aggtcgaaaa gattcccggc ggtgacgact gccgtcgctt cgcccccatc ctggaaggcg
     2461 gggagtcggc gtcgttcatg atcgtgaacc ggaataaacg cggtgtcgcg atcaacctca
     2521 agactgacgg cggccgtgaa gtgctgcgca aaatgctcgc caccgccgac gtagtcaccg
     2581 agaactaccg tcgcggcacg atggaaaaac ttggcatggg ttatgaagcg ctcaaggcgg
     2641 aaaatcccgg tttgatctat tgcgcgatct cgggttttgg ccgcagcgga cccatggccg
     2701 acaagggagg tttcgacctg atcgcgcagg gtatgagcgg tctcatgagc atgaccggcg
     2761 aaccgggtca ggcgccaatc aaagcgggct cgccggttac cgatatcaac gcgggcattc
     2821 tcgccgcgct tggaatctgc gcggcctatg ccggcaagca aaagaccggg ctgggccaga
     2881 tggtggacac atcgctcttc gaagccggtc tgcagcagat gtactgggcc ttcgccaact
     2941 acttcgccga cggcacggtg ttgcccaagg caggctcggc gaatccgacc agcgcgccgt
     3001 atcaggcgtt ccggactcgc gacgggtggg tgaatatcgg cgcggcgaat cagagcaact
     3061 acgagcggct ggttggtgcg cttgatattc cggggcttga cgacgatgag cgtttcaaga
     3121 ccaatgcggg gcgattgacg catcgcggag cgctggtcga aatcctgaca gcccggctcg
     3181 tcgagcgaac gacgaacgat tggttagcgg ctttcgatgc gatcggcctg ccgtcagggc
     3241 cggtgctcgg cgtgcccgaa gcggcggcgc atgaacaggc gctggcgcgc ggaatgattg
     3301 tcgagacaac gcatccggtc gcggggcgca tgcgcggtct gggcctgccg atccatttct
     3361 ccgacgggct tacacagtcg cccttgcccg cgccgttgct cggtcaacat acggcagaag
     3421 tactgcggga atatggcttc tccgatgagc gtattcatgc gctaaaagag gaaggcgcga
     3481 ttctgggaag cgatgtaacg gtctgagtca acttctgaaa agacgtctgg cttgccggac
     3541 gtctcaaagc taaatcgccc tagactgaac ttcgcccata acgctaagca cattcccgtt
     3601 ggagaggaat accttaagcc gccagcaaga tgatttaatc cgtcatcgct cgaaaacacg
     3661 acgtcgtttt tgatcaatat ggtgagcaaa agcatcacct gatccccagt catccggtga
     3721 taagctacgc gatgtccaaa caccctggtt ctcgtatcgg actcgctcga ctcagcgctt
     3781 tcgctcgggc cttggcagct atcccttcgc ggctacgaca atcggtgtta tccaggacgc
     3841 ttacgcaggg acgccgcagt ttcttcggat catgaatctc tatgcctgca accattgccc
     3901 aaagcagagc ggtgccgctg cgcagcatcg cgcaaattct cgccgccatg ttttgctttg
     3961 cggtggtcga tgccctggca aaatcggtca gcctgaaata ccccgctaac gagatcacgt
     4021 tctttcggat gatcttcggc ttgttgcccg cgtttgcgat gtgccttcaa ggcaaacccc
     4081 taagcgagcg gctaaggaca ctggattttc gggcgcagac actccgcgcg attaccttgc
     4141 tttgcgcact cggactgttc ttcgcggggt tgccttacgt gccgttgagc gaagcggttg
     4201 ctatcgttta ttcggagaca atcttcgtga tcgtgctggc gcccttgctt ctcaaggaaa
     4261 cgctaagacg tcgtgacgcc agcgcggccg cgatcggttt tatcggcgtg cttttagtcg
     4321 tgcgtccaag cagcgatcag acaagttggc tcggtcccgt acttctggtg gccagcgcga
     4381 tctttggggc gttatcgatt ttgcaaatca aacgcatccg tgcatcgaac gattcgagtg
     4441 tgaccgtgct ttacttcacc ctgatcggcg cgctcgtcag cgggctttcg ctctttttcg
     4501 cgtggcgcac gccgacgctg gatttcctga ccgtcatggg cttgctcggc atcctggccg
     4561 gcactgggca attgctgttg accatggcgt tccgacaagc cgatgcgagc gcgctcgcgc
     4621 cgtataacta caccagcatt gtctgggcag cgatctttgg ttatgtggtc tggggcgaga
     4681 tagtcggcac gttgtcgttg atcggcatct tgctgattgt cggcagctcg atactggttg
     4741 ccatcaggcg caagcaagcc gacggcccgc tggtttaatc aagcgagccg tcggccgtct
     4801 tagtcaatcg acaacctcaa cgcaaacgcc agcaaggcaa tcgagaacgt ccagcgttgc
     4861 acgatctgag cgcgtggatg gctgcgcagc caacctgaca gtcgcaccgc agaaagcgcg
     4921 agcgttatgt cgagcagtgc gcccatcacg accagcacca cgccaagttc gaaaacctgc
     4981 gaccagaccg cgcccgcttc cggatgcacg aattgcggca gcaagaccga acagaacagc
     5041 agcgctttgg gattgagcag attgcccagc acgcccttcg acaacgcggc gcgcagcggc
     5101 ggacgcgtct tcgatgtcat gttgttgttg ttgttgagac cgaacgccgg cgagcgaaaa
     5161 atctggatcg ccacgtaggc gagatacagc gcgccggcga tacgtacgcc gtcgtagagc
     5221 cacggtgcgt tgcgcagcag cgccgcgacg ccaagcgccg acaacgtaac gtgcagagtg
     5281 cgcgccatcg ccagaccggc agcggtcgag agccc
//
LOCUS       DATGBK010001245         1566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_246222, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001245 DATGBK010000000
VERSION     DATGBK010001245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246222"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            380..1216
                     /locus_tag="VKJ77_17380"
     CDS             380..1216
                     /locus_tag="VKJ77_17380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HMC47096.1"
                     /translation="MQPFIVLLVLFSALLHATWNAFLHTSGDRVWQFGMMSFPYLVCS
                     AIVLLFVPAPARESWPYIAASAALQLGYCVALAKAYKAGDFGQIYPIARGLSPLLVFA
                     GAFVFAGEHLRPLALAGVTLVSVGIISLAFRKRRFATASVPAALATGAFVSAYTIVDG
                     IGVRVAGSGFGYIAWAYILFNVPLAAMAFYRYGGPRRLFLDDPRRSLQALSGGAIAMV
                     GYTIIIIAFRYLPIAMVSALRELSSIFAVLIGWLFMREKLTARRVLACVLVTAGAVLI
                     RI"
     gene            complement(1252..>1566)
                     /locus_tag="VKJ77_17385"
     CDS             complement(1252..>1566)
                     /locus_tag="VKJ77_17385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47097.1"
                     /translation="VRDALLIRATKASAKGDELRKRVDTDVYVPASGSQGFGAVHETE
                     IFATVQSVNSKNKTITLRGPWRTETYDLSSEIAAYKLKPGDSVHAVLISATAVEVTPT
                     PK"
BASE COUNT          252 a          482 c          448 g          384 t
ORIGIN      
        1 tcgaatgaat ctcctggcga ggtcgcgttg catgaggcgc gaaagcgctc cctaccgaat
       61 tcctgcttcg gtatcgcgcg acaagtcaaa gagtgaagag tggcgagccc accgggctgt
      121 gatgtaacag gttagatgca agacccatgc gcatgggttt cgcttcggtg ggggtaagtt
      181 tgaaatccgc catgcggtcg aacgcagcgc gtgcaagccg tggtgaagcg gtactgtcat
      241 gaccggcgac tcgcctgggt cagcggaacg tcccgttctc tgccataatg acgcttcgcc
      301 gtttgccact ttttgccatc aaacgcctta ccttgccacg cacgcggtcg cccatgccgt
      361 cacccttccc gcggtcctga tgcagccttt catcgtcttg ctcgtcctgt tctccgcgct
      421 gctgcatgcc acctggaacg ccttcctgca caccagcggc gaccgggtgt ggcaattcgg
      481 catgatgtct ttcccctacc tcgtatgttc ggcaatcgtg ctgctgttcg tgcccgcgcc
      541 ggcgcgcgaa agctggccgt acatcgcggc atcggcggct ttgcagctcg gttattgcgt
      601 ggccttggcg aaggcctaca aggcgggtga cttcgggcag atttatccca ttgcacgcgg
      661 cctctcgccg ctgctcgtgt tcgcgggcgc gttcgttttt gcgggcgagc acctgcggcc
      721 gctcgcgctg gcgggcgtca cgctcgtgtc agtcggcatc atttccctgg cattccgcaa
      781 gcgccgtttc gccaccgcaa gcgtgccggc cgcgctcgcg acaggcgcgt ttgtctcggc
      841 ttacacgatc gtggacggca tcggcgtgcg cgtagccggc agcggcttcg gatatatcgc
      901 gtgggcgtac atcctcttca acgtgccctt ggccgcaatg gctttttatc gatacggcgg
      961 cccgcgccgc ctgttcctcg acgacccgcg acgctcgctg caagccttaa gcggcggagc
     1021 gattgcaatg gtcgggtaca ccatcatcat cattgctttt cgttacctgc cgattgcgat
     1081 ggtttcagcg ttgcgcgaac tgagttcgat cttcgccgtt ttgatcggct ggctattcat
     1141 gcgcgaaaag ctgaccgcgc ggcgcgtgct ggcgtgtgtg ctcgtcacgg ccggcgcggt
     1201 tttgatccgc atttaagcgt tcttttgccg attttaaatc aagtccatgc attatttcgg
     1261 cgtgggcgtc acttccacgg ccgtggctga aatcaacacc gcgtgcacgc tatcgcctgg
     1321 cttcaattta tatgcggcta tttcagagct taagtcgtac gtctcggtac gccatgggcc
     1381 acgcagggta attgttttat tcttgctgtt gacactctgc accgttgcga aaatctcggt
     1441 ttcatgtaca gcgccaaaac cctgagaacc tgatgccggc acataaacat cggtatcaac
     1501 acgttttcgc aattcatctc ccttcgctga cgctttcgtt gccctgatca gcagcgcgtc
     1561 cctgac
//
LOCUS       DATGBK010001246         1575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176797, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001246 DATGBK010000000
VERSION     DATGBK010001246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176797"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..483)
                     /locus_tag="VKJ77_17390"
     CDS             complement(148..483)
                     /locus_tag="VKJ77_17390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47098.1"
                     /translation="MAGSLIYLLGSPLIANCESAASRMPSTPAVLIESTAPCRAQLKD
                     AVRELRGKVVTLTGDSFTRNDSVVLSTVGQSASGRMMPPTEILRLQLASQGCQLQLDG
                     LDRVVALPH"
     gene            complement(492..>1575)
                     /locus_tag="VKJ77_17395"
     CDS             complement(492..>1575)
                     /locus_tag="VKJ77_17395"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HMC47099.1"
                     /translation="NGGIIRIAYVDPNGPAATAGFARGMVLATVDGVATSSSIPQAQF
                     DKLFNSAAGTSSVVGVQDTVGGPVRTLTVATAIFGTSPLIVDRVLPGTTTGYLAYNSF
                     STPVGEVQLADAFDRFAAAGVTDLVVDLRYNGGGFINIAAELGYMVAGQAQSSGKVFE
                     ALVFNDKRSADNTSIGFANAITNLFGNSPRSLSALNLQRVFVLTSGSTCSASEAFISA
                     LSGIDIDVVLVGGTTCGKPFGFDQANNCTLAFFGLEFEGRNDKGVVTPVTGIPPTCAA
                     TDDLDHALGDPAEQMLATALGFRVAGSCPVPAIVLASDTLSLLGGNAMASASMNARLQ
                     NPNALNADMEFMTRPLETVKLYRKTK"
BASE COUNT          341 a          458 c          488 g          288 t
ORIGIN      
        1 tggcgctccg aatatggccg gcgccggatc gggtcgaagg ggcgggccat cgcgagcgcg
       61 tcgccgaaat ggcgaggcgc cgcaaaacgg ccggctcata ggggatcgcg cggggtcgaa
      121 ctatttgacg gcgacagcgc ggcaggttca gtgtggcaac gccaccaccc gatcgagacc
      181 gtcaagttgc aattggcagc cttgtgacgc aagttgcaag cgcaaaatct ccgtcggcgg
      241 catcattcgg ccactcgccg actgaccgac cgttgacagc acaacggaat cattccgcgt
      301 aaacgaatca ccagtcagcg tcacgacctt gccacgcagc tcgcgtactg cgtccttcag
      361 ttgcgcacga caaggtgccg tgctttcgat cagcacagcc ggcgtcgatg gcatgcgcga
      421 ggcggcgctc tcacaattcg caatcagcgg actgccaagc aggtaaatga gtgagccagc
      481 cacgaggcgc ttcacttggt tttacggtat agtttgacgg tttcgagtgg acgagtcatg
      541 aattccatgt cggcgttcag ggcgttggga ttctgtaaac gggcgttcat tgaagcggaa
      601 gccattgcgt tgcccccgag cagcgaaagc gtgtcggaag cgagcactat cgccggtacc
      661 ggacaactgc ccgcgacgcg gaaaccgagg gcggtggcga gcatttgttc ggcggggtcg
      721 cccagggcgt gatcgagatc atcagtggcg gcacaggtcg gcgggatgcc ggtaaccggg
      781 gtcaccacac ctttgtcatt gcggccttcg aactcgagac caaagaacgc cagagtgcaa
      841 ttgttggcct ggtcgaaacc gaatggcttg ccgcaagtcg taccacccac cagcacgaca
      901 tcgatatcaa tgccactcag cgcactgatg aatgcctcgc tcgccgagca ggtgctgcca
      961 ctcgtaagga caaaaactcg ctgcaggttc agcgcgctaa gagatcgagg gctattgccg
     1021 aaaagattgg tgatagcgtt ggcgaatccg atgctggtat tgtcggcgct gcgtttgtcg
     1081 ttgaagacaa gggcttcgaa taccttgccg ctgctctgtg cctggcctgc caccatatag
     1141 ccaagctccg cagcaatatt gataaatccg ccgccgttgt agcgcagatc gacaaccaga
     1201 tcggtgacgc ccgccgcggc aaagcgatcg aacgcatccg ccagttgtac ctcgcccacg
     1261 ggcgtggaga aactgttgta agccagatat ccggtggtgg tgcccggcaa aacgcgatcg
     1321 acgataagtg gcgaggtacc aaaaatcgcg gtggccacgg tcaatgtccg caccggtcca
     1381 ccgactgtgt cctgcacgcc gactactgac gaggtgccgg cggcactgtt gaacaacttg
     1441 tcgaactgtg cctgcgggat ggaagacgat gtggctacgc catcaaccgt ggcgaggacc
     1501 atgcctcgcg caaacccggc ggtcgccgcg gggccattcg gatctacata cgcaatacgg
     1561 atgatgccgc cattg
//
LOCUS       DATGBK010001247         1570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_153673, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001247 DATGBK010000000
VERSION     DATGBK010001247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153673"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..481)
                     /locus_tag="VKJ77_17400"
     CDS             complement(59..481)
                     /locus_tag="VKJ77_17400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017329259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HMC47100.1"
                     /translation="MHTHPPRHDDCFAVRQAARHISQLYERHLSAVQITPTQFSIVSA
                     LARMPDMTMAELAQTMVMERTTLVRVLQPLLRSNLVLAKLGGPCQRRLQLTLTEGGRN
                     KLADALRHWQAAQEEFEAKFGRPQAARLRRELFRLTSE"
     gene            complement(607..1494)
                     /locus_tag="VKJ77_17405"
     CDS             complement(607..1494)
                     /locus_tag="VKJ77_17405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47101.1"
                     /translation="MTSLKVFRAVVEAKSFTRAADLLGVSPPVVSRAIATLEQRLGNR
                     LFHRTTRHISLTETAEQFFAGCSRVLDELDALEAQASNRSSEPTGMLRLVAHTTATVN
                     RLVPLIATFRRRYPLIGLDVTLTERPVDLVADGYDLGVVLPFMLTSDTTVTRLLERIP
                     LVIVVTPGYLEGKPRPVHPCALAGLEFVAMHASIRKPMLTFRLDGGEQITVPLKADVT
                     SNNAVFNRELVLEGFGLGVLPAALVRDELASGKLVSLLDDFEIVDGAIEIRLAYSSRT
                     LLPAKVRAFIEHAAEFFEA"
BASE COUNT          303 a          490 c          490 g          287 t
ORIGIN      
        1 tgcatcgaat ggtttatgcg ggcgtgagcg gtgaacgctg agcggtgagg ccctcggttc
       61 attcgctggt caagcggaac agttcgcgcc tcagacgtgc cgcctgcggg cgcccgaact
      121 tcgcctcgaa ttcttcttgt gctgcctgcc agtgccgcaa cgcatcggcg agcttgttcc
      181 ggccaccttc ggtcagcgtt agctgcaaac gccgctggca aggtccaccc agcttcgcca
      241 ggacgaggtt gctgcgcagc aacggctgca gcacccggac cagcgtcgtg cgctccatca
      301 ccatggtctg cgcgagttcc gccatcgtca tgtccggcat gcgcgcaagc gcggagacga
      361 tactgaattg cgtcggcgtg atctgcaccg ccgacaaatg ccgctcgtat aactgcgaga
      421 tgtgccgcgc agcctggcga accgcaaaac agtcgtcgtg tctcggaggg tgtgtgtgca
      481 tgtgcacaga ttatgtgtgc atatgcacgt agtcaaccat catcgcgcgc atttaattaa
      541 tgacgaatcc gtcaacaatc ggaagagagt cgatgcgaaa tgaaaatgaa agcttgctcg
      601 cccggctcag gcttcgaaaa attccgcggc gtgttcgatg aacgcccgca ccttggccgg
      661 cagtaatgtg cggctgctat acgccagccg gatttcgatc gcgccgtcga cgatctcaaa
      721 gtcgtcaagc agcgacacca gcttgccgga cgccagttcg tcgcgtacca gcgccgccgg
      781 cagcacgccc aggccgaaac cctccaacac cagttcgcgg ttgaacaccg cgttgttcga
      841 tgtcacgtcg gccttcagcg gtaccgtgat ctgttcaccg ccatccagcc ggaacgtcag
      901 catgggcttg cgaatcgacg catgcatggc gacgaattca agtccggcga gcgcgcacgg
      961 atgcaccggc cgcggcttgc cttccagata cccaggcgtc accacaatga cgagcggaat
     1021 gcgctcgagc aggcgtgtga cggtcgtgtc gctggtgagc atgaagggca acacgacacc
     1081 gaggtcgtaa ccgtccgcca ccaggtccac gggccgctcg gtcagcgtga cgtcgagtcc
     1141 gatcagcggg taacggcggc gaaatgtggc aatcaacggg accagccggt tgaccgttgc
     1201 cgtcgtatgg gcgaccaggc gcagcatgcc ggtcggctca ctgctgcgat tggacgcctg
     1261 cgcctccagc gcgtcgagct catccagcac gcgtgagcag cccgcgaaga attgctcggc
     1321 agtctcggtc agcgagatat ggcgtgtggt ccgatgaaag agccggttgc ccagccgctg
     1381 ctcgagtgtg gcgatggcac gcgacacgac cggcggcgac acgcccagca gatcggcggc
     1441 gcgcgtgaaa ctttttgcct ccacgaccgc gcggaacact ttgaggctcg tcagctagtc
     1501 catgtctcgg tccttgaggg ggcggcgcgg atgcgttcaa tcggacttgc cgacaggcaa
     1561 ttccgtcgca
//
LOCUS       DATGBK010001248         6161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_315853, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001248 DATGBK010000000
VERSION     DATGBK010001248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6161
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315853"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..1394)
                     /locus_tag="VKJ77_17410"
                     /pseudo
     CDS             complement(1..1394)
                     /locus_tag="VKJ77_17410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018435100.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
     gene            complement(1463..1927)
                     /locus_tag="VKJ77_17415"
     CDS             complement(1463..1927)
                     /locus_tag="VKJ77_17415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HMC47102.1"
                     /translation="MNIKGYSIATIDDFVGRELGVSNWVVVDQARINAFAECTGDKQW
                     IHVNEELAKRESPFGCTIAHGYLTLSLLAALAIEIGLIPEDASAGLNYGLDKVRFMTA
                     VKAGARVRNRVTLMSVEKKGGGRILVKTMNELQIEGEEKPALIAETLAMLVL"
     gene            complement(1950..3593)
                     /locus_tag="VKJ77_17420"
                     /pseudo
     CDS             complement(1950..3593)
                     /locus_tag="VKJ77_17420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577400.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase"
     gene            complement(4077..5885)
                     /locus_tag="VKJ77_17425"
                     /pseudo
     CDS             complement(4077..5885)
                     /locus_tag="VKJ77_17425"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
BASE COUNT         1153 a         1938 c         1794 g         1276 t
ORIGIN      
        1 cacggcgtga tgtgatcggt catgccggct accacgtatt tgtcacacgt cacttcagac
       61 aggtcgatcg gcgtacccag gaccgtcagc gcgcgaggct tgctgaaaag attgcccgtg
      121 aagatgtcga gcaattgccc atgcatcgct gcgggcagcc gcgtcgcgtc gttgttccag
      181 tagagaatgt cgaaagcggg cggtgcttta ccgagcagat agttattgac ccagtagttc
      241 cagatgagat cgttgggtct catccacgcg aacacacggc ccatttattc gccggcgagc
      301 acgcccttcg atgcgctgtt ctgcttcgcg gccgcgatgg cttccggcgt tgcaaagaga
      361 ccaagctgcg agtcagccgt attgtccagc acggcgacca tcagcgtggc ggcattgacg
      421 ctcttgtcag cacggcttgc gaggtggccg aggagtgccg caatcgtcat cgcacccgag
      481 caggcgccat gcaggttgac gtcgtcgctg ccggtcaggt cgcgtactgc cgcgattgct
      541 tcgagaagcg cggcaacgta ggtatcgagg tcccagtgac gctgtgcggc ggtgggatta
      601 cgccagctca ccacgaacgt ctggaactcg ctcttcacca gatagtcgac gatgctcctg
      661 ccttcggaca aatcgaaaat gtagaacttg ttgatctggg gtggcacgat cagctgcggg
      721 cgggcgtaca catgctctgt cgccggcgcg tactggatca gctcgagcac gtcgtttcga
      781 aagaccaccg cgcccggcga cgtggcgaga ttttcgccca ccttgaacgc cgtcctgtcg
      841 acttgcgcgg gcatcccctg gttctccagc atatccgtca cgaggttcct catgccgcca
      901 agcaggctcg cgcctcccga atcgataacc ttcttgagtg cagccggatt gccgagcagc
      961 gtgtttgtcg gcgacagcgc atcggtgaac agcgacagca cgaactgcgc gcgttccttg
     1021 ctcttcgcgt cgagcgcgga gcgctcgaca aaccctgtca gcgcgttgcg ccacgccacg
     1081 taactttgca gtgccatgcg gtaaagcgaa ttgctctgcc acgcagggtc ggtgaagcgc
     1141 ttgtcgccct gaggcggcgt agagtccaca cttccgccaa gaaccgccat cagatcacgg
     1201 gcgagcgccg cctcctgctc catgagcaat gtgggttgtc gcagcgcctg ggcgccaatc
     1261 tgctgcgcgg ttgccagaat gtcgctcgag cgcagtccca cgaacggatt cggtccgagc
     1321 atgccttccg ctgcagacgc cgcgaggtcg ttcaacggct cgcctggtgc catgctttcg
     1381 tcatttgccg ccatcttgct gctcctcaaa catctttatc tgcttcgcca acacagttgc
     1441 ctgccgctta cgagatccgt gcttacaaga ccagcatcgc caatgtctcg gcgatgaggg
     1501 ctggcttctc ctcgccctcg atctgcagtt cgttcatcgt cttgacgagg attcggccgc
     1561 cgcccttctt ttccaccgac atcagcgtca cgcgatttct cacccgcgct cccgctttaa
     1621 ccgctgtcat gaagcgcacc ttgtccagcc catagttcag cccagccgat gcgtcttcgg
     1681 gaatgagtcc gatctcgatc gcgagcgccg ccagtaggga gagcgtcaga tagccgtgtg
     1741 cgatcgtgca gccgaacgga ctctcccgct tcgccagctc ctcgttcacg tgaatccatt
     1801 gcttgtcgcc cgtacactcg gcgaacgcgt tgatacgtgc ctggtcaacc acaacccagt
     1861 tcgacacgcc cagttcgcgg ccaacgaagt cgtcgatggt ggcgatgctg tatcccttga
     1921 tgttcatcgt gttcgctcct tggcgctggt caggcgaact gctcgcgcag ccccttcttg
     1981 ttgatcttcc caacactcgt tcttgcgagt gcatcgacga acttcacgac ctgcggcacc
     2041 gcgtatttcg atatcttccc ggttgcactg aacgacagta cgtattgctt gatgtcgtcc
     2101 tccgtgaccg ccgcgccctc cttgagcacg accagcgcca ccggtcgctc cccccactta
     2161 tcatccttga tgccgatgac ggccacttcg gaaacgccct cgtattgcga gatcagattt
     2221 tctatctcga gcgatgaaac ccactcgccg ccggacttga tcacgtcctt gagacggtcg
     2281 gtgatttgta tgttgcccgt cggatcgata ctggcaatgt cctgcgtatg gagataacca
     2341 ccggcccaaa gccgctcgga agcctcggga ttgttcagat agccctgcgt gagccacggt
     2401 gcgcgcgcga cgatctcgcc ggtggcttta ccgtcgtgtg cgagatcgtc catgttgtcg
     2461 tcgacgaccc gcaggtcaac gagaggaact ggccggccgg tcttgcagcg caggcgaagc
     2521 tgctcgtcgg cgccaagctt ttcggacccg ggcggaagtt gcgcgagact gagtacgggg
     2581 cacgtttccg acatcccgta accgacgaac acgtcgatgc cccggtccag cgccgcttgg
     2641 gcgaggcctt gcggcaacgc gccgccgccg atgatgatct tccacttgct caagtccgtg
     2701 gaccgcccct cctcacacga gagcagcatg tgcaggatcg tgccgacaca atgcgagaac
     2761 gtaaccccct catcgcgtac gagtcgtgcg agccggtccg gcacatagcg cccgggatag
     2821 acctgcttca cccccagaac cgtggcgata tacggcatac cccatgcgtg gacgtgaaac
     2881 atcggggtga gcggcatgta cacgtcacca cgatgaaaac gttgtcccga aaccgggctc
     2941 gccagtgccg ccatcagcgt gatggtatgc aagaccagct ggcggtgcga gaagtacaca
     3001 cccttgggca agccggtggt tcacgttgtg tagaacgtcg tggcgcgggt gttctcgtcg
     3061 aagtcaggga aatcgtagct cgtcgcgctc gccgagagca ttgcctcgta ttccgtggcg
     3121 aacgcaatgg tgtgcgggca cgcttcactg tccggctcgt cgatccacac gaatgtgcgg
     3181 accgtttcaa gctgatcctt gatcgcttcg accacgggca ggaagtcagt gtggacaaac
     3241 agcacctccg cgccggcgtg gttgatcgtg taggcgatct ccgcctccga caacctcacg
     3301 ttgaccgtct gaagcacggc gcccatcatt gggactgcaa agtatgattc cagatagcgg
     3361 tgactgtccc agtccatgac cgccacggtg ctgccgtgcc gcacgccgag cccgttgagg
     3421 ccattggcga gccgcgcgat gcgttccctc agcgtggtat aggtcatccg caattcgccg
     3481 cggtacacga tttcctgttc cggcgcctga atgaacggcg tatgcagcaa ttgcttgatc
     3541 agcagcggat aagcataggg ggattgcgtc gagccctgca cagcgtcctg catctacgtc
     3601 tcctgaagtc gagaaatgga tcgggctgca agtccgtcgg tgcatatcgc gcacggtggc
     3661 atcccggttg atgccatcat cgaattgttc gcaagaagga accatccccc gaacagggga
     3721 gcttcaaggg tgccaccaag tagtgagaat cgcggcgcgg gtccggccct tgacgtcagc
     3781 cgtacggggc gtggctcaat gcgggaagac aagggaagtt tcgatagctc ggcggccaag
     3841 ccgcggagcc atcggcgcga gcagggtctt ccctataggc cgatcgccag tgtttctcac
     3901 catccactga ggcggtagtc gtatagagag gaaatcgtgc ccgcccggat aacgtgacgt
     3961 acataccgtc acggtcggcg atcttgtacg gagttctact gatacaggcg agcggccgtt
     4021 gggctcgcgt tgccggttac ccccgctcgc ttccgccccg cttaaccggc caagccctat
     4081 aaattttcgc ggatcatggc gaacacgtcg gcagactgtc cctgcagcat ggctttcgct
     4141 gaatacaggg ccattccgta cgcagccccc cactcgatct tcggcggcat cacgagcgtc
     4201 atcgtgtcga ccttgacgtt cagcagcgcg gggccgggct ggttcaacca tgtaacgact
     4261 gcctcttcga gctcatcggc tttcgccacc gtgcgccccc ataatccgat cgcctcggcg
     4321 accttgccga agtccgggtt ttgcaggccc gtatagagcg ggagcatgcc ttcggacttc
     4381 tgctaaatgt cgataaatcc aagcttgccg ttgtcgaaca ccaccacctt gacgggcagc
     4441 ttctcctgca cgagcgtcat cagctcaccg aacagcatgg cgaggccacc atcgccggac
     4501 atggaaatca cctggcgtcc aggctggcac ttctgcagcc ccattgacat cggcagagcc
     4561 gccgccatcg tgccatgaag cagactcgaa aacgcccggc gttttccgtt cgtttcgaca
     4621 tgccgataca gccagacagt gggcgtccca tcgtccgcgc aaaagagtgc atcgctcgct
     4681 gcatgccggt tgatcagctc ggtcagatag atgggcggaa tcgttccgcg gttcgacgca
     4741 acggccttcg accggtgggt ttccgcagcg cgggcatgcc gttcgacgag cttgtcgcgg
     4801 aactcggttg acgtacgcgg tttaaggcgg ggcagcaaag cctccatcgt ggacttgata
     4861 tctccaacca gtcctagcgt gaccggatgc cgacgaccaa gatgatcggg tgcgatgtcg
     4921 atctgaacga tcttggcctt ctccgggtag aactgccgcc acgcgaagtc ggcgcccagc
     4981 atcaacaagg tctcgcattc ggataccgcc agatagcccg cttcgccgcc gataatgcct
     5041 gtcatgccga cgttgtacgg gttgtgatgt tccatcgcgt ctttggcacg ggacgagtgc
     5101 gcaatgggcg ccttgagccg ctcggctacc gccaggattt cggcgtgggc tccacgacat
     5161 cccgagcctc cataaatcgc aatcttgtcg ccgcccgaat tgaggatttc cgcggcacgg
     5221 tcgaggtctg cgtcactcgg ccggacaacg ggcacattcg tatggaccga atacgggacg
     5281 tcatcgctcg cattagcatg ggcgatgtcg accggaacga tcagcacagc gacgccacct
     5341 ttcgcaatgg cggtttgaca ggcaatcacg gtcttgcggc gcgcctgctc cggcgtaatg
     5401 atcatgtcgc agaacacgct gcacgatccg tagatcgcct tgaaatcgac ttcctgcgga
     5461 aagttgaagc cgagttcctc gctcgctacc tgggttgcga tcaggatgac cggagcccga
     5521 ttacggttgg cgtccaccag gccgttaatg aagtgaaggc tgcccgggcc gcagcttccc
     5581 gccacggccg tgaggttgcc ggtcaacatg gcttcggctt cggcggcgaa cgcgccagcc
     5641 tcctcatgtc gcacatggac ccactcgatg tcgctctcgt tgatgtgatg agcgatgaga
     5701 ttcagcgtgt cgcccacgat cccgtagcaa tgttttacgc ccgccgacgc gagcgtgtcc
     5761 acaatgattt cggcaacttt tttgctcatc ccggctctcc tgaaggtgct ccatgcataa
     5821 aatgatccgc cgccgttgtg aaccgcaggc ccggcgttcg tcactgccgg tcgcgctgat
     5881 tccatcggtg aagcgattca cttatcttgc atggactcct tattatctga tatcacccca
     5941 aagggggatc gatgccatga cggcccctcc atgtctcaag cttgacgcat gcttcagcta
     6001 gttgacagag cgagcagacg ccggccgatg tgatcgccac gtggcaagga attcgacagc
     6061 cgctcgagcg ttgaagtgaa acggcgctgt tgcacatccg cctgttcggc gtcaccgcgg
     6121 gcctcgtgaa tcgctgccgc cgtgcggtga agacgccagt c
//
LOCUS       DATGBK010001249         2053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_38815, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001249 DATGBK010000000
VERSION     DATGBK010001249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38815"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1283
                     /locus_tag="VKJ77_17430"
     CDS             <1..1283
                     /locus_tag="VKJ77_17430"
                     /inference="COORDINATES: protein motif:HMM:NF013703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HMC47103.1"
                     /translation="INFFHTAISIGMTIGVSATVARLLGAGQRTKARQVASASLVLMI
                     VITVILSAATLLFLDPILNALGATGETRVLTRGFLLITAPTYVFLAIGMCTAALMRSV
                     GDARRAMTVTLTAAVVTAILDPILIFGFHLGLTGAAISNDIARVALALVGLHGATRVN
                     DLIARVRFARLWSNSQPVMKVALPAVLTNLATPVASAYVTHAMARFGAAAVAGQATID
                     RITPVAFAVIYALTGAVGPIIAQNLGAGRADRIRETVRNSLVFVLLTVAVAWVVLALA
                     QGGLIRAFSARGDTAVIITAFCSWLVASYAFVGCQFVANATFNNLDRPLLSTVFNWGR
                     ATIGTVPFVAAGMRHGPVGVMIGQAAGNAIFGTMAMLVAYAVVKRLPMGDCAALARKG
                     SNRLEQSSVNVPAAAAGNTMAPGVELKELPVQGG"
     gene            1584..1859
                     /locus_tag="VKJ77_17435"
     CDS             1584..1859
                     /locus_tag="VKJ77_17435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47104.1"
                     /translation="MNKTLIASLLVAVSAAFAAPAFASSGYGPAPSYNPQVGAPSSQR
                     GQSAQTIAAENAVSNADASAYGGVRNTTTQSGDRVQANDTRSLNSRN"
     gene            complement(1860..>2053)
                     /locus_tag="VKJ77_17440"
     CDS             complement(1860..>2053)
                     /locus_tag="VKJ77_17440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47105.1"
                     /translation="TVAATLAKSTALNYASKCSGLCPQLECQEDQEDQTGRKIHKHRC
                     PANLSSPGIGFLLSAKLRL"
BASE COUNT          360 a          653 c          603 g          437 t
ORIGIN      
        1 ccatcaactt cttccacacc gccatatcca tcggcatgac cataggtgtc agcgcaaccg
       61 tcgcgcggct tctcggtgca ggccagcgga ccaaagcgcg gcaggtggca tcggcgagtc
      121 tggtgctgat gatcgtcatc acggtcatat tgagcgccgc cacgctgctc ttccttgacc
      181 cgatcctcaa cgcgctcggc gcgaccggcg aaacgcgtgt gctgacccgc ggcttcctgc
      241 tgatcaccgc gcccacgtac gtgttcctcg ctatcggcat gtgcacggcc gcgctgatgc
      301 gttctgtcgg cgatgcgcgg cgagccatga ccgtcacgct gaccgccgca gtcgtgaccg
      361 cgatcctcga tccgatcctg atcttcggtt ttcatctcgg gttgacgggt gcggccatat
      421 cgaacgacat tgcgcgtgtc gcgctcgcac ttgtcggtct ccatggcgca acccgggtca
      481 acgatctcat tgcccgtgtc cgctttgcac gcttgtggtc caacagccag ccggtcatga
      541 aggtcgccct gcccgccgtg ctgaccaacc tcgccacgcc cgttgccagc gcatacgtga
      601 cgcatgcaat ggcgcgattc ggcgctgcag cggtggcggg ccaagccacc atcgaccgca
      661 tcacgcccgt ggcgttcgcg gtgatctatg cgctgaccgg cgcggtcggt ccgatcatcg
      721 cccagaatct cggcgcgggc cgcgcggacc ggattcgcga aacggtacgc aacagcctgg
      781 tgttcgtgct gctgacggtc gcggttgcgt gggtcgtgct cgcgctggct cagggtggcc
      841 tgattcgcgc gttctcggcc cgcggcgaca cagccgtcat catcacggcg ttctgttcgt
      901 ggctggtggc aagttatgcg ttcgttggct gccagttcgt ggcgaacgcg accttcaaca
      961 atcttgatcg gccgttgttg tcgactgtgt tcaattgggg gcgcgcgacc atcggcacgg
     1021 tgccgttcgt tgcggccggg atgcggcatg ggcctgtggg cgtgatgatt ggacaggccg
     1081 ccggcaacgc gatcttcggc acgatggcca tgctggtggc atacgccgtg gtcaagcgct
     1141 tgccaatggg cgattgcgcc gcgctggcgc gcaagggcag caaccggctt gagcaatcat
     1201 ccgtcaatgt acctgccgct gccgccggaa ataccatggc gccgggcgtg gagttaaagg
     1261 aactgcctgt gcaaggtggt taggccacaa gtcgcttaag ccctctaagc cacctgagcc
     1321 acttagcgtt ttctctttgc gttcaagcct gattcagctt ctcaaattgg cgttatcacg
     1381 ccctattttc tcagcgaatt cagctaagcc gactgcctcc gattgttcgt tttgcgcgga
     1441 atcactattc ccctctatcg gtacaatatt tcgatagtgt gcgcatatac tccgttccat
     1501 cgacgcagca caccaaccag caggaccgct gcgtagccca cgaaatgaag tcactgagcc
     1561 actcatacgc atcggagcgc atcatgaaca agacccttat tgcatcgttg ttagtcgccg
     1621 tttccgccgc ctttgcagca cccgcatttg caagcagcgg ttatggtccg gcaccgtctt
     1681 ataacccgca agttggcgca ccctcttcgc aacgcggcca aagcgcgcaa accatcgcag
     1741 cggaaaatgc cgtgagtaat gccgacgcga gcgcttacgg cggcgtgcgg aacaccacca
     1801 cgcaatcggg tgaccgcgtt caagccaacg acacgcgttc gctgaactcg cgtaactgat
     1861 caaagccgaa gtttggcgct tagcaggaag ccgatgcccg gcgaactcag gttcgccggg
     1921 catcggtgtt tgtggatctt gcggcctgtc tgatcttcct gatcttcctg acattcaagc
     1981 tgtggacaca ggccggagca ctttgatgca tagttgagag cggtcgactt agccaacgtc
     2041 gccgctaccg tcc
//
LOCUS       DATGBK010001250         2816 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176827, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001250 DATGBK010000000
VERSION     DATGBK010001250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2816
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176827"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1408
                     /locus_tag="VKJ77_17445"
     CDS             <1..1408
                     /locus_tag="VKJ77_17445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sensor histidine kinase N-terminal
                     domain-containing protein"
                     /protein_id="HMC47106.1"
                     /translation="SLRRSLLRRLAAPLSLLALMSGLMAYWLAWQYTQHVVDRSLADL
                     ATAISKQIQLAGVDAPLTVPPLARAMFSDPIEQLIYRISDGDSEIAGEPDLPLTGTNV
                     RRIHYAYIFETTYQGTSVRAAQVRVDQPHGNPIVVEVAQRVGSRYRIAVEFMVAIMMP
                     LLLLLLAGWVIVWRVVNQQLNPLTDLADTLNRQTHTSLEPVDESFVPVEIRPLTSAMN
                     ALLDRLKTALDGQRKFIADAAHQLRTPLTAVKLHAEQAASAKDPAKVLAAVKELRASA
                     DRAVRLSNQLLSLARAEPGEQAARFTDFDYAALAFDTGAEWVPRALAVGIDMGFQRLD
                     DPDNEHPLIVRGNLVLVREVIGNLIDNALKYVPTSRAEGARVTVTVTQTIDETGRRMG
                     EIVVEDNGPGVPLEQQPDLFKRFFRGDGHGVEGGAGLGLAIVHDIMALHNGSVHYEDA
                     PAPEGGARFIVRMPLKTP"
     gene            complement(1470..1925)
                     /locus_tag="VKJ77_17450"
     CDS             complement(1470..1925)
                     /locus_tag="VKJ77_17450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HMC47107.1"
                     /translation="MSSRRVAVRRSGIHGKGVFAAMPLAKGERIIEYKGERISWKEAL
                     RRHPHNPDEPNHTFYFALENGKVIDGKVDGNSARYINHSCAPNCEAEEKEGRVFIHAL
                     RAIKEDEELYYDYGLVIDGRITKKLKKEYECRCGAKKCRGTMLALKKKK"
     gene            complement(2225..>2816)
                     /locus_tag="VKJ77_17455"
     CDS             complement(2225..>2816)
                     /locus_tag="VKJ77_17455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010107262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HMC47108.1"
                     /translation="EVHGAHGYLLHQFLSPLANQRTDEYGGSLENRMRFPLEVFDAVR
                     AAFPADKPVGLRVSASDWVEGGWDLEQTIVFVKELQKHKVDWIDVSSGGVSPLQKIPL
                     SPGYQLPFAKAIKEATGVNTMGVGLITDPQHAEEIIESGEADLVALARALLYNPRWPW
                     HAAAQLGATVEAPPQYWRSQPREQKALFGDISFGQR"
BASE COUNT          518 a          895 c          841 g          562 t
ORIGIN      
        1 cagcctgcgg cgctcgctgt tgcgccgcct tgccgcgccg ctgtcgctgc tcgcgttaat
       61 gagcggattg atggcgtact ggcttgcgtg gcagtacacg cagcacgtgg tcgaccgctc
      121 gctggccgat ctcgccacgg ctatctccaa gcaaatccag ctggcaggcg tcgacgcacc
      181 gctcacggtg ccgccgctcg cccgcgcgat gttctcggat cccatcgaac aactgatcta
      241 ccggatcagc gacggcgata gcgagatcgc cggcgaaccc gatctgccgc tgaccggcac
      301 aaacgtgcgc cggattcact acgcgtacat cttcgagacg acctaccagg gcacgagcgt
      361 gcgtgcggcg caggtgcgcg tcgaccagcc gcacggcaat ccgatcgttg tggaagtggc
      421 gcagcgcgtg ggctcgcggt atcggatagc cgtcgagttc atggtcgcga tcatgatgcc
      481 gctgctgctc ctgctgctgg ccggctgggt gatcgtatgg cgcgtggtga accagcagct
      541 caacccgctg accgatctcg ccgataccct caaccggcag acccacacgt cgctggaacc
      601 ggtcgacgaa tccttcgttc ccgtcgaaat tcgtcccctg acgagcgcga tgaacgccct
      661 gctcgaccgc ctgaaaacgg cgctggacgg ccagcgcaaa tttattgccg atgccgccca
      721 tcagcttcgt acgccgctca ccgccgtgaa gctgcacgcc gagcaggctg cgagcgccaa
      781 ggacccggcg aaggtcctgg ctgctgtaaa ggagctccgg gcatcggcgg atcgggctgt
      841 gcggctgtcg aatcagctgc tttcgctcgc tcgcgccgag ccgggcgaac aggccgcgcg
      901 tttcactgac ttcgattacg ccgcgcttgc gttcgacact ggcgccgaat gggtgccgcg
      961 cgcgctggcc gtcggtatcg acatgggctt ccagcgtctc gacgatcccg acaacgaaca
     1021 tccgctgatc gtgcgcggca atctcgtgct ggtgcgggag gtgatcggca atctcatcga
     1081 taacgcgctg aaatacgtgc ccacctcacg ggccgaaggc gcccgcgtga ccgtgacggt
     1141 gacgcagacc atcgatgaaa ccggccggag gatgggcgaa atcgtggtgg aagacaacgg
     1201 tccgggcgtg ccgctggaac agcagccgga tctcttcaag cgtttctttc gcggcgatgg
     1261 ccacggcgtg gaaggcggcg ccggactggg tctcgcgatc gtccacgaca tcatggccct
     1321 gcacaacggc agcgtgcatt acgaagacgc tccagcgccc gaaggtggcg cgcgtttcat
     1381 cgtgcgaatg cctttgaaaa cgccatagaa aaacgccacg gaggaaacct gccgtggcgt
     1441 ttttttagct gacaccctct aagagagccc tactttttct tcttcaacgc cagcatggtg
     1501 ccgcggcact ttttggcgcc gcagcggcac tcgtattcct tcttgagctt cttcgtgatg
     1561 cgaccgtcga tgacgagacc gtagtcgtag tacagctctt catcttcctt gatcgcacgc
     1621 agcgcgtgga tgaacacgcg cccttccttc tcttcggctt cgcaattcgg cgcgcacgaa
     1681 tggttgatgt agcgtgcgct gttgccgtcg accttgccgt cgatcacctt gccgttttcg
     1741 agcgcgaaat agaacgtatg gttcggctcg tccgggttgt gcggatgacg gcgcaacgcc
     1801 tctttccacg aaatgcgttc gcccttgtac tcgattatcc gttcgccttt ggcgagcggc
     1861 atcgcggcga acacgccctt gccgtgtatg cccgaacggc ggacggcgac cctccgtgaa
     1921 ctcatcgaat gaatccttta aaacgaatcg gcttggctta gcagacgctt gaacttcgcc
     1981 tcgtcccggt ttcacgcgaa cggtgacgaa ccggaacgtg gattaaaaaa acgcggcggc
     2041 ctgaatgcga ggcgccgccg cgttgctgtc cttctcattg cattggttgc ttcggttgct
     2101 tcatgtgctg caattcactg tccttctccg cccgcgtgag gttgaaacca tgcaggcgaa
     2161 caacggcatc gtacacgtta ggcgcgcacg agttcaaccg ctccataaat tcaagcctcg
     2221 agtttcagcg ctgaccgaac gagatatcgc cgaacaacgc tttttgttcg cgcggctgcg
     2281 agcgccagta ttgcggcggc gcttccacgg tcgcacccag ttgcgcggcc gcgtgccacg
     2341 gccagcgcgg attgtagagc agcgcacgcg ccaatgcgac gagatccgcc tcgcccgatt
     2401 caataatttc ttcggcatgc tgcgggtcgg tgataagacc cacgcccatg gtattcacgc
     2461 cggttgcttc cttgatggct tttgcgaacg gcaattgata acccggcgac agcggaattt
     2521 tttgcagcgg cgacacgcca cccgacgaca cgtcgatcca gtccaccttg tgtttctgca
     2581 actccttcac gaacacgatg gtctgctcga gatcccagcc gccttccacc caatccgatg
     2641 ccgacacacg caggccgacg ggtttatcgg cgggaaaagc ggcgcgcacg gcgtcgaaga
     2701 cttccagcgg aaaacgcatg cggttttcga gcgagccgcc gtattcatcg gtgcgctggt
     2761 tggcaagcgg tgagaggaac tgatgcagca gataaccgtg ggccccatgc acttca
//
LOCUS       DATGBK010001251         2073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_246300, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001251 DATGBK010000000
VERSION     DATGBK010001251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246300"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1521
                     /locus_tag="VKJ77_17460"
     CDS             <1..1521
                     /locus_tag="VKJ77_17460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012250260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47109.1"
                     /translation="ESWLAHDMAYRLLADLRIRLFRQLDRLAPGYLLRRRSGDLVTLA
                     TQDVETIEYFYAHTVAPAIVAVLVPAAVITVLALAAWPLALGLLPFLAYAMLSPVRGR
                     SRIDSLGSKARESLGLLGAHMTETIQGLSDLLAFQATGRRREAFMALAREYSVTRLAL
                     LADLARQTALLDVATGLGGLAIAVGGAFLVSAGQLSAAWLPMLILLAVAAFMPVAEIA
                     QVGRQLADTIASARRLRVVHDEPVLVLDGERDLHAAPGGSEVRFEDARFAYAERTQPV
                     LNGVSFCVRAGSTAALVGASGAGKSTIANLLLRFWDPDTGSVQVDGVDLRRLRLDSLR
                     SHVALVSQDTYLFNDTLEANIRLARPDASEKALRLALDQASLGDFVATLPEGLATRVG
                     ERGVQLSGGQRQRVAIARAFLKDAPVLVLDEATSHLDAISEAQVHTALKTLMANRTTL
                     IIAHRLATVREADLIIVLDHGSVIEAGPHAQLLANNSVYAQLVNRQQVGNGLQQSA"
     gene            complement(1591..1935)
                     /locus_tag="VKJ77_17465"
     CDS             complement(1591..1935)
                     /locus_tag="VKJ77_17465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006027474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3088 domain-containing protein"
                     /protein_id="HMC47110.1"
                     /translation="MSQDLLLLLEPGFTDPKYPGERFICPDGAPIEGLLASDPSKTSR
                     LDIHRLPFARPREAVVAALDEDHQSLPVLILGDEHPVPADAQRLGDRRFVTDTRRILD
                     LLAERHGFPKVH"
BASE COUNT          363 a          635 c          666 g          409 t
ORIGIN      
        1 gaatcctggc tcgcgcacga catggcgtac cggctgctgg cggatcttcg aatacgcttg
       61 ttcagacaac ttgatcgtct ggcgccgggc tacctgctcc gccgtcgctc tggtgacctc
      121 gtgacgctgg ctacgcaaga cgtagagacc atcgagtatt tctatgcgca tacggtcgcc
      181 ccggcgatcg tcgcggtgct cgtcccggct gcggtgatca ccgtgctcgc actggccgcg
      241 tggccgcttg cgctcgggct gctgccgttc ctcgcgtacg cgatgctctc gccggtgcgc
      301 gggcgcagcc gtatcgattc gctgggcagc aaggcacgcg aatccttggg cctgctcggc
      361 gcgcatatga ccgagaccat ccagggtttg tccgatctgc ttgcgttcca ggcgaccggg
      421 cgccggcgtg aagcgttcat ggcgctggcg cgcgaataca gcgtgacccg gctcgcgttg
      481 ctggcggatc tggctcgaca aactgcgcta ctggatgtcg cgaccggcct cggcggattg
      541 gcaatcgcgg taggcggtgc gtttctggtc tcggccgggc agctttctgc ggcctggcta
      601 ccgatgctga ttctgctcgc cgttgcagcc ttcatgcccg tggcggaaat cgcgcaggtg
      661 ggcaggcaac tggccgatac gatcgcgtcg gctcggcggt taagggtcgt gcatgacgag
      721 cccgttctag tgctcgacgg agaacgcgac ttgcatgcag cgccgggtgg ttcggaggtt
      781 cgcttcgaag acgcgcgttt cgcctacgcc gagcgcacgc aacccgtatt gaacggcgtg
      841 tctttctgcg tgcgcgccgg ctctaccgcg gcgcttgtgg gtgcctcagg cgccggcaag
      901 agcaccattg caaatctgct gctgcggttc tgggacccgg atacaggttc ggtgcaagtg
      961 gatggtgtcg acttgcggcg cttgcggctc gactcgctac gctctcacgt tgccctcgtg
     1021 tcacaggata cgtatctgtt caacgacacg cttgaggcca acatccggct cgcccggcct
     1081 gacgccagcg agaaagcact acggctcgcg ttggaccagg cgtcgctcgg cgacttcgtg
     1141 gccacgctgc cggaaggact cgccacacga gtcggtgaac gtggcgtgca gttgtcggga
     1201 ggccagcgtc agcgtgttgc cattgcgcgg gcttttctca aggatgcacc ggtactggtt
     1261 ctggatgaag caacgtcaca tctggacgcc atcagcgaag cacaggtaca taccgcgcta
     1321 aaaactctga tggccaaccg cacgactttg atcatcgcgc accgcctcgc gaccgtacgc
     1381 gaggccgatc tgatcatcgt gctggaccac ggctcggtga tcgaagcggg accccatgcg
     1441 caactgctcg ccaacaactc ggtctatgcg cagctggtca accggcaaca ggttggcaac
     1501 ggcttgcaac agtccgcgtg aggcgattgg tccttggcgc cacggatgct tacagcaata
     1561 tgccaacgct gccggctggt tcccggttca tcaatggacc ttggggaaac cgtggcgctc
     1621 ggcgagcaga tccagaatgc gacgcgtgtc ggttacaaag cgtctgtcgc cgagcctctg
     1681 tgcgtcggcg ggcaccggat gctcgtctcc gagaatcagc acgggcaagc tctggtggtc
     1741 ctcgtcgagc gcagcaacga ccgcctcgcg cggccgcgca aacggcagac gatgaatatc
     1801 gaggcgtgag gttttcgacg gatcgctggc cagcaggccc tcgataggtg cgccatccgg
     1861 gcagatgaaa cgctcaccag gatatttcgg atcggtgaaa cccggttcca gcagcaataa
     1921 aaggtcttgg ctcacgattt gataatcctc gaagaagaga tacgaatcga gcgactcaat
     1981 tccattggag cggggtcgct gtgaataaat cgacaactcg aaccactgca cgccgatctg
     2041 gccggatttc cgcgcatgcg aaacggctgc gtg
//
LOCUS       DATGBK010001252         3309 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_130498, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001252 DATGBK010000000
VERSION     DATGBK010001252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130498"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..409)
                     /locus_tag="VKJ77_17470"
     CDS             complement(<1..409)
                     /locus_tag="VKJ77_17470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011354246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HMC47111.1"
                     /translation="MIIDTSCYPTNLVDLAWRHDGEPFTGERLLKTLDGPYIINGKPR
                     RIDKAFIQPPQGNTIYTWTDGERSGRESIDDYMAYTVELVQRYPDRLLGCFVYNPRCG
                     PENGAKAIEFYAKEHGFKMVQLQANMHAYRPDRA"
     gene            641..1570
                     /locus_tag="VKJ77_17475"
     CDS             641..1570
                     /locus_tag="VKJ77_17475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47112.1"
                     /translation="MDIRLLRYFAVLADELHFGRAAARLHISQPPLSQQIRLLEEELG
                     TALFTRSQHRVELTEAGKTLKEQVPLVFAQFERAIDLARCAGRGEVGNLEIGIISSAM
                     VDAIPLALRAFDERYPAVRWTLHEMTPAAQIQALKEHRLDVCFFRLTHDDPEIQSEVV
                     VRECAMAVLPPGHRFAQRQEIALKELHAERFVSFGLTQSKLARFLRDCCIEAGFTPKI
                     EQEVVEVQTLLCLVRQGLGVALVPSSSQQLTTGGVVFKPLSGQPPEVSLYARFRTGDT
                     SPVLRLFLDTVRQCAEGSSTEVPLTQGSAQPAP"
     gene            complement(1539..2432)
                     /locus_tag="VKJ77_17480"
     CDS             complement(1539..2432)
                     /locus_tag="VKJ77_17480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012216505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47113.1"
                     /translation="MFKRYPSIQSMQAFLNAARGGSFSSAARQLDLTHSAISQQIRTL
                     EEFVGQPLFERKNGRVMLNDAGVLFANLLGDGFEQIDRALSSVQERLVAHSLTLDVDP
                     ELSQHWLSSRLAGLIDALDGRALTVLSTPRHERTAFERIDIALRYGYGEWEGYENKLM
                     CTDRLTVMASPALVKRFGLSLPLAPEAVLELPLLGYTKRSWIPWLEAAGLAALEPSNV
                     LAVFDNAASLIEAMTAGVGAGLARGLLAADALRAGQLVALTEVAIATHYNLYAVWPQG
                     KRERVADVVETLTALVAQSLE"
     gene            2548..3024
                     /locus_tag="VKJ77_17485"
     CDS             2548..3024
                     /locus_tag="VKJ77_17485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006578605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC47114.1"
                     /translation="MIEIIVNDERHTLDNVPEDMPLLWVLRDRLKLTGTKFGCGGGFC
                     GACTVHLDGNAMRSCVLPVGAVAGHRITTIEGLSKTGEHPLQRAWVEEDVPQCGYCQP
                     GQLMSAAAFLNGKPEVNDETITAAMSGNVCRCGTYVRIRRAIKRAAPELLSPKKEA"
     gene            3024..>3309
                     /locus_tag="VKJ77_17490"
     CDS             3024..>3309
                     /locus_tag="VKJ77_17490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HMC47115.1"
                     /translation="MRAASKPAVALAASRGVSRRRFLKQGSALLAAGVAVGFRLPDAR
                     ADEASGAAASTSATNEFEPNAWVRVLPDDTIKLVVHKHDSGTGTRTALAAI"
BASE COUNT          618 a          973 c         1061 g          657 t
ORIGIN      
        1 gtgcgcggtc cggccggtag gcgtgcatgt tggcctgcaa ctggaccatc ttgaagccgt
       61 gttccttcgc atagaactcg atagccttgg ccccgttctc aggaccgcaa cgcgggttgt
      121 agacgaagca gccgagcagt cggtcggggt agcgttgaac cagctcgacg gtgtaggcca
      181 tgtagtcgtc gatcgattca cggccggaac gctcgccgtc ggtccacgta tagatggtgt
      241 tgccctgggg cggctggata aaagccttgt cgatgcggcg cggtttgccg ttgatgatgt
      301 acggcccgtc gagcgtcttg aggaggcgtt cgcccgtgaa cggttcgccg tcgtggcgcc
      361 aggcgaggtc gaccaggttg gtcgggtaac agcttgtgtc gatgatcatg tactcgatct
      421 cccataacag aggaactggc attaaccagt tgccggatcg ctggcaggcg catctgcgga
      481 tgtgcattgc ggccctttgc aaagcgctat tttttttagc gctttcccct cgccggcatc
      541 gagtgtcaca ctgatgtgca ctgctgcttg attcgcagtc tcttcaaaca aaagcgctct
      601 gtacaatatt ttttaacgtg actcttgata cgtaggcgat atggacatcc ggctgttgcg
      661 ttacttcgcg gtgcttgccg acgagttgca tttcggccgc gcagccgcgc gcctgcacat
      721 ttcccagccc cctttgagcc agcagatcag gctgcttgaa gaggagctgg gcacggctct
      781 tttcacgcgc tcgcaacatc gtgtggaact cacggaggca gggaaaacac tgaaggaaca
      841 ggtgcccctg gtgttcgcgc agttcgaacg ggcgatcgat ctggcccgtt gcgcggggcg
      901 aggggaagta ggcaacctcg agataggcat catcagttcg gccatggtcg acgccattcc
      961 gcttgcgctg cgcgcgttcg acgagcgtta tccggccgta cgatggacgc tgcacgaaat
     1021 gacgcctgcc gcgcagatac aagcgctgaa ggagcaccgc ctggacgtgt gtttctttcg
     1081 tctgacgcat gacgaccccg agatccagag cgaggtggtc gtgagggaat gtgcaatggc
     1141 cgtgctgccg ccggggcacc ggtttgcaca gagacaggag atcgcgttga aggagttgca
     1201 cgcggagcgc ttcgtgtcgt ttggcctgac gcagtcgaag cttgcgaggt tcttacggga
     1261 ctgttgtatt gaagccgggt ttacgccgaa gatcgagcag gaggtggtcg aggtgcagac
     1321 gttgctgtgc ctggtgcggc aagggcttgg cgtggccctc gtgccttcct cgtcgcagca
     1381 gttgacgacc ggcggtgtgg tcttcaagcc gttgagcgga caaccgccgg aggtgtcgct
     1441 ctatgcgcgc ttccggaccg gagatacgtc gccggtgcta cggctgtttc tcgataccgt
     1501 acgccagtgt gccgaaggct cttctactga agtccctctc actcaaggct ctgcgcaacc
     1561 agcgccgtga gcgtctccac cacgtccgcc accctttcgc gtttgccttg cggccacacc
     1621 gcgtaaaggt tgtagtgggt ggcaatggcc acctcggtca atgccaccag ttgccccgca
     1681 cgaagcgcat ccgccgcgag caaaccccgt gcgagcccgg cgcctacccc ggccgtcatg
     1741 gcttcaatca ggctcgcggc gttgtcgaac acggctagca cgttcgaagg ttcgagcgcc
     1801 gccaggccgg ccgcttcgag ccacggaatc cacgatcgct tcgtataacc gagcagcggc
     1861 aactcgagca ccgcttcggg ggcgagcggc aagctcaggc cgaatctttt caccagcgcc
     1921 ggtgaggcca tgaccgtcag ccggtcggtg cacatcagct tattttcata gccctcccat
     1981 tcgccgtagc cgtatcgcaa cgctatatcg atgcgttcga acgcggtgcg ctcgtggcga
     2041 ggcgtggaca acacagtcag ggcacgtccg tccaacgcgt cgatcaaccc cgccaggcgg
     2101 gagctaagcc agtgttgcga caactccgga tcgacatcga gcgtcaggga gtgggcgacc
     2161 aggcgctcct gcaccgaaga caacgcgcgg tcgatctgct cgaagccgtc gccaagcagg
     2221 ttggcgaaca gcacgccggc gtcgttaagc atgacgcgcc cattcttgcg ttcgaacaac
     2281 ggctgcccga cgaattcctc cagcgtcctg atttgttgac tgattgcgct atgcgtgagg
     2341 tcgagctgcc ttgccgcgct cgagaaactg ccgccgcgcg ccgcgttgag aaaggcctgc
     2401 atcgactgga tggaagggta gcgtttgaac atacctgtta gccggactga cggccgttag
     2461 aagaaattgt cgctggcgcg ggatttaacg gctttcaata atcggcgcga cggctggaca
     2521 acaagcgaca agcgaaggga ggcacccatg atcgagatca tcgtcaatga cgagcggcat
     2581 acgctcgaca atgtaccgga agacatgccg ctgttgtggg tgttgcgcga ccgcctgaaa
     2641 ctcaccggca cgaagttcgg ttgcggcggc ggattttgcg gcgcatgcac ggtgcacctc
     2701 gacggtaacg cgatgcgctc ctgtgtgctg ccggtggggg cggtagcggg gcatcgcatt
     2761 acgaccatcg aaggtttgtc gaagaccggc gagcatccgt tgcagcgtgc atgggttgaa
     2821 gaggacgtgc cgcaatgcgg ttattgccag cccgggcagt tgatgtcagc agcggcgttc
     2881 ctcaacggaa aacctgaagt caacgacgaa acgatcacgg ctgccatgtc cgggaacgtt
     2941 tgtcgctgcg gcacttatgt gcgcattcga agggcgatca aacgcgccgc tcccgaactc
     3001 ctgtcgccaa agaaggaggc atgatgcgcg ccgcaagcaa accggcggtg gcgctcgccg
     3061 cgtctcgtgg ggtctcccgc cgacgcttcc tgaagcaggg ttcggcgttg ctcgccgcgg
     3121 gtgttgcagt cggctttcgt ttgccagacg cgcgggcgga cgaagcgtca ggcgccgctg
     3181 cttcaacgag cgcgaccaac gaattcgaac ccaacgcatg ggtccgtgta ttgcccgacg
     3241 acacgatcaa gctcgtggtc cacaagcatg actcgggcac cggaacgcgg accgcgctgg
     3301 cagcgatcg
//
LOCUS       DATGBK010001253         3046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_270055, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001253 DATGBK010000000
VERSION     DATGBK010001253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270055"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..80)
                     /locus_tag="VKJ77_17495"
     CDS             complement(<1..80)
                     /locus_tag="VKJ77_17495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014898328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HMC47116.1"
                     /translation="MARLARLYVPEQPQHVILRGLDQQPA"
     gene            348..1073
                     /locus_tag="VKJ77_17500"
     CDS             348..1073
                     /locus_tag="VKJ77_17500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011402559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpW family outer membrane protein"
                     /protein_id="HMC47117.1"
                     /translation="MKIKRVITGVAAFACVSGAAHAQSANTFFVTTGWFHFAPLSSSG
                     PLKETSVGGSPVGVDVPNSGASLSNGDTAGFTAGYFVTDHIAGEFVLGIPPSFDLKGE
                     KGYSQYGTVGSAKQWSPTLLLKYYFMQPQSKIRPYVGIGVTHVSFTDAKITNTDFETN
                     VLHGPTDVSTDSSWAPVFNAGLTYAFTDHWFAGFSISFIPLHATAKLTTQAQTPVGQL
                     TVNSEAKLKLNPIVTYLNVGYRF"
     gene            complement(1121..1384)
                     /locus_tag="VKJ77_17505"
     CDS             complement(1121..1384)
                     /locus_tag="VKJ77_17505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47118.1"
                     /translation="MDESWMGRESAEKQKVSKLDADSPAAFNIARWRLATQGVRRQAK
                     NQGKVESARVGSEKCLSRVIFTNAERQTPLRGILATAFVLGLL"
     gene            1400..1777
                     /locus_tag="VKJ77_17510"
     CDS             1400..1777
                     /locus_tag="VKJ77_17510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 family protein"
                     /protein_id="HMC47119.1"
                     /translation="MNAFPNTRDAIGDSWNSTSRRARRISRHSRDAAQDIGGELRTLI
                     SEIEETLSEGTSADVAALRAQLSKSVDSARERLNNTHDAVRARANTALADADTYIHDK
                     PWQTIALVGGLALVAGVLLARAR"
     gene            complement(1857..2600)
                     /gene="ugpQ"
                     /locus_tag="VKJ77_17515"
     CDS             complement(1857..2600)
                     /gene="ugpQ"
                     /locus_tag="VKJ77_17515"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HMC47120.1"
                     /translation="MKIWPYPRIVAHRGGGKVAPENTLDGIDTGARLGLKMIEFDAKL
                     SADNVVFLLHDDLVDRTSNGRGPAKNLRYEELEQLDAGSWFDPSFAGARMPTLVQVAE
                     RCFSHGLAANIEIKPCEGRDVETGVLVAQEAARLWSGAEPAPLLSSFSYAALEAAAGA
                     APDLPRGLLYHAIPGDWRAQTAALACVSLHADHETLDERLVAEIKDSGLRILAYTVNE
                     PERARELAAWGVDAICTDRIDVIGADFLD"
     gene            complement(2624..>3046)
                     /locus_tag="VKJ77_17520"
     CDS             complement(2624..>3046)
                     /locus_tag="VKJ77_17520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HMC47121.1"
                     /translation="EVYERPATVFVASFIGSPAMNLLEGRVSDDGSGFDVAGNGPRLP
                     LAGMQSLQEDLKGREWVLGIRPEHMLPEQQSAHVSLTVDSCELLGADNLAHGRWGKHD
                     VAVRLPHEHRPARGEALEVALPAHRLHIFDPATGLRVN"
BASE COUNT          614 a          939 c          847 g          646 t
ORIGIN      
        1 aaagcgggct gctgatcgag accgcgcaag atgacgtgct gcggctgttc gggaacgtag
       61 agtcgtgcta gccgtgccat gctggatttt ccgttggtcg agcgttggtc gggttcgggt
      121 attccggcgg tccgtcaaag ccacattctg ggccaccttg aaatttttcg ttcaagtcgt
      181 acggggagat gcatcaactc atgcatcagc cgggaaaatc aggagcccgg caccgcgcta
      241 atccaattgg agccagcatt cttcttaggg aaaacgctct gaggcgaagc atggtttgtt
      301 tcaaatgttc tgttcataat tagcgtgctt tttcggagga gcactcaatg aaaataaaac
      361 gggttattac gggggtcgcc gcattcgcgt gcgtgtctgg tgcagcacat gcacagtcgg
      421 cgaacacttt cttcgttacc accggctggt tccatttcgc gcctctttcc agtagcggcc
      481 cgctcaagga aacgagcgta ggtggatcgc cagtcggcgt tgacgtaccc aacagcggcg
      541 ccagcctctc taacggggac accgcaggct tcacagcagg ctactttgtc accgaccata
      601 ttgccggcga attcgttctc ggcattccgc cctcgttcga cttaaaaggt gaaaaggggt
      661 attcgcaata tggcacggtc ggctccgcca aacagtggag cccgacgctg ttgctgaagt
      721 actacttcat gcaaccgcag tcgaaaatcc gtccctacgt aggcattggc gtgacacacg
      781 tgtcgttcac cgatgcaaag atcacgaata ccgacttcga aactaacgtg ctgcatggtc
      841 cgaccgacgt atcgacggat agttcgtggg cacccgtgtt taatgcaggc cttacatacg
      901 ccttcaccga tcactggttt gccggtttct ccatctcgtt catacctctg cacgctaccg
      961 ccaagctgac aacccaggcg cagacgccgg ttggccagct caccgtaaat tcggaagcga
     1021 agctgaagct gaacccgatc gtgacgtatt tgaacgtcgg gtatcggttc taaacgcggt
     1081 tctagacgcc tccacccgaa gtgttgttcc tgctgttccg ttaaagcaag ccaagaacaa
     1141 acgccgttgc gaggattcct cgcaacggcg tttgtctttc agcgtttgta aatatgactc
     1201 gcgacaggca cttttccgag cccacccggg cagattctac ttttccctga ttttttgcct
     1261 gtcgccggac gccttgcgtg gcaagcctcc agcgtgcaat gttgaacgca gcgggtgaat
     1321 cggcatccaa cttgctcacc ttctgttttt ccgcactttc gcggcccatc cacgattcat
     1381 ccatcgacgg agcgatccta tgaacgcatt ccccaatacg cgagatgcca tcggagattc
     1441 atggaattcc accagccgcc gtgcacgccg catttcgcgt catagccgcg acgcggcgca
     1501 ggacattggc ggcgaattgc gcacgctgat ttcggagatt gaagaaacgc tgtcggaagg
     1561 gacgtcagcc gacgtcgccg cgctgcgggc tcaattgagc aagagcgtgg attcggcacg
     1621 cgagcgtttg aataatacgc acgacgcggt acgcgctcgt gcgaatacgg ccctggccga
     1681 tgcggacacc tatattcacg acaaaccgtg gcaaaccatt gccttggtgg gcggcttggc
     1741 gctggtggca ggcgttttgc tggcccgcgc ccgataagcc ttttgcttgt atcgatgaaa
     1801 aacgcgcgcc ggaattgctc ccggcacgcg ttttttactt cttcgctcgt ttcagatcag
     1861 tccagaaaat ccgcgccgat cacgtcgata cggtccgtgc agatcgcgtc cacgccccat
     1921 gctgcgagct cgcgcgcccg ctctggctcg ttgacggtgt aggccaggat ccgcaagccg
     1981 gaatccttga tctccgcgac caggcgctcg tccagcgtct cgtgatccgc gtgcagcgat
     2041 acgcacgcca acgccgcggt ctgggcgcgc cagtcgccgg gaatagcgtg gtagagcaga
     2101 ccgcgcggca gatcgggcgc agctccggca gcggcctcga gcgcagcgta cgaaaatgac
     2161 gacaacaacg gcgccggttc tgcgccggac cacagccgcg cagcttcttg cgccactaaa
     2221 acgcccgttt caacatcacg cccttcgcac ggcttgattt cgatattcgc cgccaatccg
     2281 tgcgaaaaac accgttccgc gacctgaact agcgtcggca tgcgcgcccc ggcaaaactc
     2341 ggatcgaacc agcttccggc atcgagttgc tcaagttctt cgtagcgaag gtttttcgcc
     2401 gggccgcgcc cgttcgaggt gcggtcgaca aggtcgtcgt gtagcaaaaa cacaacgtta
     2461 tccgccgata acttcgcatc gaattcgatc attttcagac cgagacgcgc accggtgtca
     2521 attccgtcga gcgtgttttc cggcgcgact ttcccgccgc cgcgatgcgc gacgatgcgc
     2581 ggataaggcc aaattttcat gttcttgtac cctcttgcac cctttagttg acgcgtaagc
     2641 ccgttgccgg atcgaaaatg tgaagacggt gagccggcag cgccacttcc agcgcttcgc
     2701 cgcgcgccgg acgatgttcg tgcggcaaac gcaccgcgac gtcgtgtttg ccccaacggc
     2761 catgcgcgag gttatcggcg ccgaggagtt cgcaagaatc cacagtcagc gagacatgtg
     2821 cgctctgctg ctccggcaac atgtgttccg gccgaatgcc caacacccac tcacgcccct
     2881 tcagatcctc ttgcagcgac tgcatgcccg cgagcggcag gcgcggcccg ttacccgcga
     2941 cgtcgaagcc cgatccgtcg tccgacacac ggccttccag caggttcatg gccggtgagc
     3001 cgataaaact cgccacgaac accgtcgccg gccgctcgta gacttc
//
LOCUS       DATGBK010001254         2730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_223602, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001254 DATGBK010000000
VERSION     DATGBK010001254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223602"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2175)
                     /locus_tag="VKJ77_17525"
     CDS             complement(<1..2175)
                     /locus_tag="VKJ77_17525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009973063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015473 - fimbrial usher porin activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
                     /protein_id="HMC47122.1"
                     /translation="MNAVLACVPVCAQAPSLPPPVSANLPHDVYLEVELNGQRTSVIA
                     QFRELNGHLAATGKDLGNIGLALDRLGIADTAEVQLDSIPGLHYTYDAARQTVSLQVP
                     DNIRKPYTFDTRAQVKTPPATSSRGLLINYDAYAQSNTDAQLAIWSEERYFDPTGVFS
                     NTGIMYLYRNDRRYTRYDTSWSMSDPVALNTTQFGDAISSSLAWSRSVRIGGFQWRSN
                     FALRPDLVTFPVPAFAGSAVVPSSVDLYINSVRQYSGNVPSGPFIVNNVPGITGGGQA
                     TVITRDALGRTVATSLPLYVDTRLLATGLSSYSFEAGFLRRSYGLDSFDYDPRPAVSG
                     SARYGVSDLLTVEAHTEATSGVYNAGGGALVRLGMAGVVNGSLSASAGRLAGTQASLG
                     YEIVEPHFSIDAQTIRAFGNYGDLAARDGTPVPTATDRVTLALPLFASQTFSVSYIGF
                     KFPQTQPSQIGSASYTVNFGNLASLNLSAYKDFKQHDSRGVFLSVSFGLGNNTSVNAN
                     VGRQDGQSNYNVNATRPPDYDGGWGWGVQAGDAGAAPYRQAQVQYLGKGGEVTVVGQD
                     INGQGTASLDVTGTVVLMDGSVQPSRRIYDGFALVSTDGVAGIPVLHENRVIGVTDRG
                     GHFLVPDLNAYQENQVGIDGMKLPADARIDATSLQLVPQAQSGVLARFGVTRYSAASV
                     ILQGPDGKLLPTGAAVHHEESGKDTIVGYDGLTFVEGLQPHNH"
     gene            complement(2330..>2730)
                     /locus_tag="VKJ77_17530"
     CDS             complement(2330..>2730)
                     /locus_tag="VKJ77_17530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006414572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HMC47123.1"
                     /translation="RILIDELPAPDAAATSGVMIRLRYSVPVFVEPAGKVAQPVLSWH
                     LVRDGQGWALRVDNAGQRRAQIAAVQLVDSAGKVYEINKGLLGYALAGRMRQWPVPLP
                     ADADMSGSVKVRAAVNSLPAEAVVTVGQPG"
BASE COUNT          509 a          890 c          856 g          475 t
ORIGIN      
        1 atgattgtgg ggctgcagac cctcgacgaa ggtcagcccg tcgtagccga cgatcgtatc
       61 cttgccgctt tcctcgtgat gaaccgccgc ccccgttggc aacaacttgc cgtcgggtcc
      121 ctgcaggatc accgaggcag cgctataacg cgtgaccccg aaacgcgcca gcacgcccga
      181 ttgcgcctgc ggcacgagct gcagcgaggt cgcgtcgatg cgcgcatcgg cgggcaactt
      241 catgccgtcg atacccacct ggttctcctg atacgcgttg aggtcgggca caagaaaatg
      301 gccgccgcga tcggtcacgc cgatcacgcg gttttcatgc agcacgggaa tcccggccac
      361 gccatcggtc gacaccagcg cgaagccgtc gtagatgcgt cgcgacggct gcacgctgcc
      421 gtccatgagc accacggtgc cggtgacatc gagcgacgcg gtgccctgtc cgttgatatc
      481 ctgcccgaca accgttacct cgccgccctt gccgaggtac tgcacctggg cctgacgata
      541 cggcgcggcg cccgcgtcgc cggcctgcac gccccagccc cagccgccgt cgtaatcggg
      601 cgggcgtgtc gcattgacgt tgtaattcga ctgcccgtcc tgcctgccaa cgtttgcgtt
      661 gacggacgtg ttgttgccca ggccgaagct cacgctcagg aacacgccgc gcgaatcgtg
      721 ctgcttgaag tccttgtagg cgctgagatt cagcgacgcc aggttgccga agttcaccgt
      781 gtacgacgcc gagccgatct gcgagggttg tgtctgcgga aacttgaagc cgatatagct
      841 caccgagaag gtctggctgg cgaagagcgg caacgccagc gtcacgcggt cggtcgcggt
      901 cggcacaggt gtaccgtctc gcgccgcgag atctccgtag ttgccgaacg cgcggatggt
      961 ctgtgcatcg atggaaaaat gcggctcgac aatctcatag cccaggcttg cctgcgtgcc
     1021 ggccagacgc cccgcactgg ccgacagcga gccattgacc acacctgcca tgccaagccg
     1081 caccagcgcc ccgccaccgg cgttataaac cccgctggtg gcctccgtgt gcgcctcgac
     1141 tgtcagcaag tcactaaccc cgtatcgcgc cgatccgctg accgccggcc gcgggtcgta
     1201 gtcgaaggaa tccaggccgt atgaacggcg caggaaaccc gcctcgaacg aatagctgga
     1261 tagtccggtg gcgagcagac gcgtatccac atacagcggc agcgacgtcg cgaccgtacg
     1321 gcccagcgcg tcgcgcgtga tcacggtggc ctggccgccc ccggtaatgc ccggcacgtt
     1381 gttgacgatg aacggtccgc tcggcacgtt gccgctgtac tgccggacgc tgttgatata
     1441 aagatccacc gacgaaggca ccaccgccga ccccgcgaac gcgggcacgg ggaacgtgac
     1501 aagatccggg cgcaacgcga aattgctgcg ccactggaat ccgccgatgc gtactgagcg
     1561 cgaccacgcg agcgacgaag agatggcgtc gccgaactgc gtcgtgttta acgcaacggg
     1621 gtcggacatg ctccacgatg tgtcgtaacg cgtataacga cgatcgttgc gatacagata
     1681 catgatgccg gtattgctga atacgccggt gggatcgaag tatcgctcct cgctccagat
     1741 cgcgagttgc gcatccgtgt tgctttgcgc gtacgcgtcg tagttgatca gcaacccgcg
     1801 cgacgaagtc gccggaggtg tcttgacctg cgcgcgggta tcgaaggtat agggcttgcg
     1861 gatgttgtcc ggaacctgca aggacaccgt ctggcgcgca gcgtcgtagg tgtagtgaag
     1921 tccgggaatg gaatccagtt gcacttcggc cgtatccgca atgccgagcc ggtccagtgc
     1981 gagtccgatg ttgcccaggt ccttgcccgt cgcggcaagg tgcccgttca actcacgaaa
     2041 ctgcgcgatc accgaggtac gctggccgtt gagttccact tcgaggtaca catcatgtgg
     2101 caggtttgcg ctcactggcg ggggaagcga cggtgcttgc gcgcagaccg gcacacaggc
     2161 aaggacggcg ttcatccccg tggcgactag cgcgatgcgg aggcagtaca aatgacgtgt
     2221 tggccgtcgt cggattctca tcgattgaat tgggacacat catgtcaacg tccagcaccg
     2281 tgcaggcatg aagcggcgta gtcacgaagc gatgaagtca tgccagcgcc tagcccggct
     2341 gcccaaccgt gacgaccgct tcagccggca gcgagttgac cgcggcccgc acctttacgg
     2401 agccgctcat gtcggcgtcg gccggcagcg gcaccggcca ctggcgcatt cgccccgcca
     2461 gtgcataacc gagcagtccc ttgttgatct catagacctt gcccgcgctg tccaccagtt
     2521 gaaccgcggc gatctgcgca cgcctctgac cagcgttgtc aactcgcagg gcccagccct
     2581 ggccgtcacg aacgaggtgc caggaaagca cgggttgagc caccttgccc gccggctcca
     2641 cgaacaccgg cacggagtag cgcaggcgga tcatcacgcc gctggtagcc gctgcatccg
     2701 gcgcaggcag ttcgtcgatg aggatccgat
//
LOCUS       DATGBK010001255         3437 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_246340, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001255 DATGBK010000000
VERSION     DATGBK010001255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3437
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246340"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..87)
                     /locus_tag="VKJ77_17535"
     CDS             complement(<1..87)
                     /locus_tag="VKJ77_17535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HMC47124.1"
                     /translation="MKIRVLSDLHLEHDEPLAIPYAEADLVVL"
     gene            complement(120..1595)
                     /locus_tag="VKJ77_17540"
     CDS             complement(120..1595)
                     /locus_tag="VKJ77_17540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC47125.1"
                     /translation="MTASDRSRNFVEACIEAIGAAHVLTDTHDTAPFLTDWRKRYHGQ
                     TCAVVLPGTTEQVAKVVQLAREYRVPIVPQGGNTGHSGGATPDASGAQVVVSLRRLNR
                     IRDVDPLNNTITVEAGVILADIQARAEQEQRLFALSLAAKGSCTIGGNLSTNAGGTAV
                     LRYGNTRELCLGLEVVTPQGEVWDGLRGLRKDNTGYDLRDLYIGAEGTLGIITAAVMK
                     LHPAPVARVTALAALASPQVALDFLATAQRYAGPLLTGFELMSDFSLHLVTTHFTQMR
                     YPFSKKHGQTVLLELSDSESEEHGRALFERLMEQAMEQGLVEDAVVAENLSQSRAFWN
                     LREHIPLAQAAEGLNIKHDIAVPISRIGHFIDATDALIAQAIPGVRMVTFGHLGDGNL
                     HYNVQAPEGIDPKSFLAEFQAPINALVYESVHAHRGSISAEHGLGQLKVAEAMHYKSP
                     VELRLMRALKTALDPENLMNPAKVLPDVRAPGASGASRLSS"
     gene            complement(1706..2140)
                     /locus_tag="VKJ77_17545"
     CDS             complement(1706..2140)
                     /locus_tag="VKJ77_17545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2069 domain-containing protein"
                     /protein_id="HMC47126.1"
                     /translation="MDATSTQPGFARGALFSLIALIALSIAWELWLAPLRPGGSALAL
                     KAIPLLFALRGTFRRDVYTLQWASMLVLLYFAEGIVRGMTDGGLSARLGWLEALLAFV
                     YFVCALGFVAPFKRAARAAKRAKAATAATASTPDSTPNGNHL"
     gene            complement(2162..2764)
                     /gene="wrbA"
                     /locus_tag="VKJ77_17550"
     CDS             complement(2162..2764)
                     /gene="wrbA"
                     /locus_tag="VKJ77_17550"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003955 - NAD(P)H dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HMC47127.1"
                     /translation="MNDILVLYYSRNGATRELAQAIAQGVDSVPGMQARVRTVPPVST
                     VCEATQPDIPTNGPPYAEVRDLEECAGIALGSPTRFGNMAAPLKYFLDGTSPQWLSGA
                     LAGKPASVFTSTGSLHGGQETTLLSMMLPLLHHGMLIVGIPYTEPKLTTTQTGGTPYG
                     ASHFARAETAESGISADEKVLAMALGARLATTALTLQRGA"
     gene            2887..>3437
                     /locus_tag="VKJ77_17555"
     CDS             2887..>3437
                     /locus_tag="VKJ77_17555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HMC47128.1"
                     /translation="MLKFPIDLDTTKRLAAFVARRTGEDRVPQVAGSLTFTTVLSLVP
                     LATVAFALFTAFPIFASFQMSLQDFLAAHLMPSQINSQIFKYLNQFASKAKGLTTVGM
                     IILFVTSVMTMMTVESAFNVIWRVRKSRPFAQRVLVYWAIITLGPILFGVSLSMSSYL
                     FAQSVAFAGSHNLLPPVVEWALA"
BASE COUNT          623 a         1003 c         1097 g          714 t
ORIGIN      
        1 cagcacgacg agatcagcct ccgcgtacgg gatggcgagc ggttcatcgt gctcgagatg
       61 caggtcggac agaacgcgaa tcttcacggc gcttatctcc tcaatacgat taattgaact
      121 tacgacgaca ggcgcgacgc accggacgca cccggcgccc gtacgtccgg caacaccttg
      181 gccggattca tcaggttctc ggggtcgagc gctgtcttga gcgcgcgcat gagccgcaat
      241 tccaccgggg atttgtagtg cattgcttcg gctactttca attgtcccag cccgtgctct
      301 gcgctgatgc tgccacgatg cgcgtgcacg ctttcataca cgagcgcatt gatcggggcc
      361 tggaattcag cgagaaagct tttgggatcg atcccttccg gcgcctgtac gttgtagtgc
      421 agattaccgt cgccgagatg gccgaacgtc accatgcgca cacctggaat ggcctgggcg
      481 atgagcgcgt cggttgcatc gatgaaatgc ccgatgcggg aaataggcac cgcgatatcg
      541 tgcttgatgt tgagcccttc cgcggcctgc gcgagcggaa tatgttcgcg caagttccag
      601 aacgctcgtg actgcgacaa attctccgct acgactgcgt cctcgacgag gccttgctcc
      661 atggcttgtt ccatcagccg ttcgaacagc gcgcggccgt gctcctcgct ctcgctatcc
      721 gacagttcga gcaatacggt ctggccgtgt ttcttactga acggataacg catctgcgtg
      781 aaatgcgtgg tgacgagatg aagcgaaaaa tccgacatca gttcgaagcc ggtcagcaac
      841 ggccctgcgt aacgctgcgc ggtagcaagg aaatcgagcg cgacctgtgg tgaggccagc
      901 gccgcaagcg ccgtgacacg tgcgaccggc gccggatgca gtttcattac tgcggcagtg
      961 atgatgccga gcgtcccttc cgcaccaatg tacaggtcgc gcaaatcgta gccggtgttg
     1021 tccttgcgta gcccgcgcaa accgtcccaa acttcacctt gcggcgtcac cacttcgagc
     1081 ccgaggcaca attcgcgcgt gttgccatag cgcagaacgg cggtgccccc ggcgttagtt
     1141 gaaagattgc cgccgatcgt gcaactgcct ttggcggcga ggctgagtgc aaagagccgc
     1201 tgttcctgct cggcgcgcgc ctggatatcg gcgaggatca cgccggcttc caccgtgatg
     1261 gtgttgttga gcggatcgac gtcgcgaatc cggttcagcc tgcgtaagct gacaaccacc
     1321 tgtgcgccgc tggcgtccgg cgttgccccg ccggagtgtc cggtgttgcc gccttgcggc
     1381 acgataggga cacgatattc acgcgcgagc tgcacaactt tagcgacctg ttcggtggtg
     1441 ccgggaagca ccacggcgca cgtctgaccg tgataacgct tgcgccagtc agtgagaaat
     1501 ggcgcggtat cgtgtgtgtc agtcagcaca tgggctgcgc caattgcttc gatgcaggct
     1561 tcaacaaagt tacgtgaacg gtcggatgcg gtcatgagtt tcggtagcgg tggcgtggac
     1621 gacaggtgac acagtatcgc gtaaggtcgg gccgggcgaa tcctggcctg atggcatagg
     1681 tctcgttcac gcggactatt ccgtgctaca aatgattgcc gttgggtgtc gagtctggtg
     1741 ttgatgccgt tgcagctgtc gcggcctttg ctcgcttcgc ggcgcgtgca gcgcgtttga
     1801 acggcgcgac aaagccaagt gcgcagacga agtacacgaa ggcgagcagc gcctcgagcc
     1861 agccaaggcg tgctgacaat ccgccgtccg tcataccgcg cacaatgcct tcagcgaagt
     1921 agagcagcac gagcatcgaa gcccattgca gcgtgtacac gtcgcgacgg aacgtgccgc
     1981 gcagcgcgaa cagcagcggg attgccttga gcgccagagc ggagccgccc gggcgcagcg
     2041 gcgcgagcca aagctcccac gcgatcgaca acgcaatcag tgcaatcagg ctgaacagcg
     2101 cgccgcgtgc aaagccgggt tgggtgctgg ttgcatccat gacgggcgta gtggtcatca
     2161 atcacgcgcc gcgttgaagc gtgagcgccg tggtggccag gcgcgcgccg agcgccatgg
     2221 ccaatacttt ctcgtccgcg gagatgccgc tttcggccgt ttcggcgcgg gcgaaatggg
     2281 atgcgccata aggcgtgccc ccggtttgcg tggtggtcag cttcggctcg gtgtacggaa
     2341 tacccacgat cagcatgccg tggtgaagca agggcagcat catggaaagc agggtggttt
     2401 cctgcccgcc atgcaggctg cctgtggagg tgaaaacgct ggcgggtttg ccagcgagcg
     2461 cgccggacaa ccattgaggc gaggtgccgt cgaggaaata ttttagcggg gccgccatgt
     2521 tgccgaaccg cgtgggcgac ccgagcgcga tcccggcgca ttcttccagg tcgcgcactt
     2581 cggcgtaggg cgggccgttg gtggggatat ccggctgcgt ggcttcgcaa acggttgaga
     2641 caggaggcac ggtacgcacg cgcgcctgca tgccgggcac gctgtcaacg ccttgagcga
     2701 tcgcctgggc gagttcgcgg gtggcgccgt tgcggctgta atagagcacg agaatgtcgt
     2761 tcatgagcct tttcggtgaa cgggtattat aaggatcggg tgcgtaggcg tggcgttttg
     2821 gcgtgttttc gcctgccatt caagccgcgt tgcggatctg ttgtagtgtt tcaaggagag
     2881 agattcttgc tgaagtttcc catcgatctc gacacaacga agcggcttgc cgcattcgtc
     2941 gcccgtcgta cgggtgaaga tcgcgtgccg caggtggccg gcagcctgac atttaccacc
     3001 gtcttgtcgc tcgtgccgct tgcgacggtt gcgttcgcgc tcttcacggc gtttcccatc
     3061 ttcgcttcgt tccagatgtc gctgcaggat tttcttgccg cgcacctgat gccgtcgcag
     3121 atcaacagcc agatcttcaa gtacctgaac cagtttgcat cgaaggcaaa ggggctgact
     3181 acggtcggca tgatcatctt gttcgtcacg tcggtgatga ccatgatgac ggtcgagtcc
     3241 gcgttcaatg tgatctggcg cgtgcgcaaa tcgcggccgt tcgctcaacg tgtcctggtg
     3301 tattgggcca tcatcacact cggccctatt ctgttcggcg tgagcttgtc gatgtcgtct
     3361 tacctgttcg cgcaatccgt cgcatttgcc ggctcccata atctcctgcc gccggtggtc
     3421 gagtgggcgc tcgccag
//
LOCUS       DATGBK010001256         1530 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176916, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001256 DATGBK010000000
VERSION     DATGBK010001256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176916"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1530
                     /locus_tag="VKJ77_17560"
     CDS             <1..>1530
                     /locus_tag="VKJ77_17560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006497231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC47129.1"
                     /translation="PGVGSAELWDAGEALRVWIDPMKLREFNLAAADVTQAIAAQNAT
                     VTAGTLGDVPFVTGQQLTASVTVRGQLISPAEFGEIVLKARTDGSAVRLKDVARVELG
                     RDSYASFSRLNGKSAATVGIRLSPQGNAMETSGAIRAKLAELSRSLPPGTAVEIPFDS
                     SKFVHVALHEVALTLFEAVLLVFLVMWLFLRDLRYALVPTVVIPVALTGALLALYVLG
                     MSINVFTMFAMVLAIGILVDDAIVVVENVDRVMREEGLAPRAATRRAMQQMGSAIVGI
                     TAVLTAVFVPMAFFPGSVGGIYRQFTVAMIASILVSAFTALSLTPALCANLLKAPPRS
                     ALRHGAHGSHGSHGSHEASSRSFGFTAAFDWTSRGYRGLVARVLRRAGPMLVVYLVLA
                     GACAVLYLHMPGGFLPQEDQSQLQVMVQLPAGATQARTLAVVEQAEAILKREPAVANV
                     TSVVGWSFQGSGQNVAMCFVDLKEWSARNTDAATLRDTLNRSFSKIMDGDVAAQMPPS
                     VP"
BASE COUNT          233 a          461 c          529 g          307 t
ORIGIN      
        1 gccgggcgtt ggctcggccg aattgtggga tgccggagag gcgttgcggg tctggattga
       61 tccgatgaaa ctgcgcgaat tcaacctggc cgctgccgat gtgacccaag ccatcgcggc
      121 gcaaaacgcg actgtcacgg ccggcacgct cggcgacgta cccttcgtca ccggtcagca
      181 attgacggca tcggtcacgg tcagggggca attgatctcg ccggccgaat tcggcgagat
      241 cgtgctgaaa gcgcgcacgg atggatcagc tgttcggctg aaggatgtcg cgcgggtcga
      301 actgggccgc gacagctacg cgtcgttttc gcggctgaac ggcaagtcgg cggcaacggt
      361 cggtatccgg ctctcgccgc aaggcaacgc gatggaaacc tccggtgcga tccgcgcgaa
      421 gcttgcggaa ctgtcgcgta gcctgccgcc gggcacggcc gtggagattc cgttcgacag
      481 ttccaagttc gtccacgtcg cgctgcacga agtggcgctg acgctgttcg aagccgtgct
      541 gctggtgttc ctggtcatgt ggctattcct gcgcgatttg cgttatgcac tggtgcccac
      601 cgtggtcatt ccggttgcat tgaccggcgc gctgcttgcg ctttatgtgc tcggcatgtc
      661 gatcaacgtg ttcaccatgt tcgcgatggt gctggcgatc gggatcctgg tcgacgatgc
      721 cattgtcgtg gtcgagaacg tcgatcgcgt gatgcgcgaa gagggtctcg cgccacgtgc
      781 ggccacgcgc cgggcgatgc agcagatggg cagcgcgatc gtcggtatta cggccgtgct
      841 gaccgccgtg ttcgtaccga tggcgttttt ccccggcagt gtcggcggaa tttaccggca
      901 gttcaccgtc gcgatgatcg cgtccattct cgtgtccgcg ttcacggccc tttcactgac
      961 gccggcgttg tgcgcgaacc tgctgaaagc gccgccacgg agcgccttgc ggcacggcgc
     1021 tcacggatcg cacggatcac atggttcaca cgaggccagt agccgttcgt tcggcttcac
     1081 ggcggccttc gactggacct cgcggggata tcgcggcctc gttgcgcgcg tgctgcgccg
     1141 cgcgggtccc atgctcgtgg tgtatctcgt gctggccggc gcgtgcgcgg tgctttatct
     1201 gcatatgccg ggcggctttt tgccccagga agaccagtcg cagcttcagg tgatggtgca
     1261 gttaccggcg ggcgccacgc aggcgcgcac gctcgcggtc gtcgagcagg cggaagcgat
     1321 cctgaaacgc gaaccggcgg tggcgaacgt gacgagcgtg gtcggctgga gtttccaggg
     1381 cagcggccag aacgtggcca tgtgtttcgt tgatttgaag gagtggtcgg cgcgcaatac
     1441 cgacgcggcc acgctgcgcg acacgctgaa ccgctcgttc tcgaagatca tggacggcga
     1501 cgtggctgcc cagatgccgc cgtcggtgcc
//
LOCUS       DATGBK010001257         3290 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_84230, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001257 DATGBK010000000
VERSION     DATGBK010001257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3290
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84230"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..339)
                     /locus_tag="VKJ77_17565"
     CDS             complement(139..339)
                     /locus_tag="VKJ77_17565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47130.1"
                     /translation="MIKLTPVLAVAVAVLFTSGSPAAFAQGGASSSTASSYSPPVVEH
                     KKKPRKPRAKKGASMPASGASQ"
     gene            complement(479..3196)
                     /gene="metH"
                     /locus_tag="VKJ77_17570"
     CDS             complement(479..3196)
                     /gene="metH"
                     /locus_tag="VKJ77_17570"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009918375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HMC47131.1"
                     /translation="MTDHTMRLSGLEPFNVTDGSLFINVGERTNVTGSKAFSRMILNN
                     QFDEALAVARQQVENGAQIIDINMDEAMLDSKAAMVRFLNLIASEPDISRVPIMIDSS
                     KWEVIEAGLKCVQGKAVVNSISLKEGEDAFRHHATLIRRYGAAAVVMAFDEDGQADTY
                     ERKTQICKRSYDFLVNEVGFPPEDIIFDPNIFAIATGIEEHNNYAVDFINATRWIKEN
                     LPYAKISGGVSNVSFSFRGNDPVREAIHTVFLYHAIQAGMDMGIVNAGQLGVYQDLDP
                     ELRERVEDVVLNRREDGTDRLLEIADKFKTGAAKKEENLEWRNQGVDQRLAHALVHGI
                     TNFIVEDTEEVRARIEAEGGRPINVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVM
                     KQAVAHLIPYIEEEKKRMADAGEDVRPKGKIVIATVKGDVHDIGKNIVSVVLQCNNFE
                     VVNMGVMVPCATILAMAKEQGADIIGLSGLITPSLEEMAYVASEMQRDDYFRGKQTPL
                     LIGGATTSRVHTAVKIAPHYDGPVVYVPDASRSVSVASSLLSDDGAKKYLADLKTDYE
                     RIRTQHANRKATPMVTYEEARANKTKIDWASYEPKKPTFIGRRIFKNYDLAELANYID
                     WAPFFQTWDLAGPYPAILNDEIVGESARRVFSDGKSMLSRIIQGRWLQANGVVMLLPA
                     NTVNDDDIEIYTDDTRTQVAMTWRNLRQQTVRPIVDGVQRSNRSLADFIAPKDSGVAD
                     YIGMFAVTAGLGIDKKEKQFEADNDDYSAIMLKALADRFAEAFAEALHARVRRELWGY
                     AAGETLDNAAMIEEKYRGIRPAPGYPACPDHLVKQDMFDVLQANEIGMTVTESLAMLP
                     AASVSGFYIAHPESTYFSVGKIADDQVESFAQRMAISKNDAERALAPLL"
BASE COUNT          586 a         1000 c          963 g          741 t
ORIGIN      
        1 ggcgtgtgag ccgcgggtga cgcggcggga tttgctcgct ggctgagcct gaagcgcacc
       61 agtgcgtcag cattaaaaaa acccgcctcg tcgccgatgc gggttttttt gttccgatga
      121 atacggagcg ttcagcgctt actgcgaggc tccggatgcc ggcatgctcg cgcctttctt
      181 tgcacgcggc ttgcggggct ttttcttgtg ctccacgacg gggggcgaat agctcgacgc
      241 ggtgctcgag cttgcgccgc cctgcgcgaa ggcagccgga cttcccgacg tgaacagcac
      301 agcaacagca acggcgagga caggcgtcag cttgatcatt ttcgactttc tccgtgacga
      361 ttgagggaat gcgtggccgc cgccatggcg ccctttgcac cccttcgagt gtaaggaaaa
      421 tcaaaataac cgtaatagac ttcgccaata ttgcgtcttt gtgattcccg gtatttgcct
      481 acagcaaggg cgccagcgcg cgttcggcgt cgttcttcga aatcgccatg cgttgcgcga
      541 aactttccac ctgatcgtcg gcgatcttgc cgactgaaaa gtacgtgctt tccggatgcg
      601 cgatgtaaaa gcccgacacg ctggctgccg gcaacatggc cagtgactcg gtcaccgtca
      661 tgccgatttc gttcgcttgc agcacatcga acatgtcctg cttcaccagg tgatccgggc
      721 acgccggata gccgggcgcc ggacgaatcc cccgatactt ttcttcgatc attgcggcgt
      781 tgtcgagtgt ttcgccagcc gcgtaacccc acagctcacg acgcacccgc gcgtgcagcg
      841 cttcagcaaa ggcctcagca aaacgatcgg ccagcgcctt cagcatgatt gcgctgtagt
      901 cgtcgttatc ggcttcgaac tgcttctctt tcttgtcgat gcccagcccc gccgtcaccg
      961 cgaacatgcc gatatagtcc gccacgcccg agtccttcgg cgcgatgaaa tccgctagcg
     1021 agcggttgga gcgctgcacg ccatccacga tcggacgcac ggtttgctgg cgcaagttac
     1081 gccatgtcat ggcgacttgc gtgcgggtat cgtcggtata gatctcgatg tcgtcgtcgt
     1141 tcaccgtgtt cgccggcagc agcatcacca cgccgttcgc ctgcaaccag cggccctgga
     1201 tgatgcgcga gagcatcgat ttgccatcgg agaaaacgcg ccgcgcggat tcacccacga
     1261 tttcgtcgtt gagaatggcc ggatacgggc cggcgagatc ccaggtctgg aagaacggcg
     1321 cccagtcgat gtagttcgcc agctccgcga gatcgtagtt cttgaagatg cgacgcccga
     1381 tgaaggtcgg cttcttcggt tcgtagctcg cccagtcgat tttcgtcttg ttcgcgcgcg
     1441 cttcctcata ggtgaccatc ggcgtcgcct tgcggttcgc gtgctgcgtg cgaatgcgtt
     1501 cgtagtccgt cttgaggtct gcgaggtatt tctttgcgcc gtcgtcggag agcaggctcg
     1561 acgccaccga taccgagcgc gacgcatccg gcacatagac caccgggcca tcgtaatgcg
     1621 gagcaatttt cacggccgta tgcacacgcg aggtcgttgc accgccaatt agcagcggcg
     1681 tttgcttgcc gcggaaatag tcgtcgcgtt gcatttcgga cgcaacgtag gccatctctt
     1741 cgaggctcgg cgtaatcaaa cccgacaagc cgatgatgtc cgcgccttgc tccttcgcca
     1801 tcgcgaggat ggtcgcgcag gggaccatca cgcccatgtt gaccacttcg aagttgttgc
     1861 actggagcac gactgaaacg atgttcttgc cgatatcgtg cacgtcgccc ttgacggtcg
     1921 cgatcacgat cttgcccttt ggccggacgt cttcgccggc atcggccatg cgcttctttt
     1981 cttcctcgat gtacggaatc aggtgcgcca cggcttgctt catcacgcgt gccgacttga
     2041 ccacttgcgg caggaacatc ttgcccgcgc cgaacaggtc gccaactatg ttcatgccgt
     2101 ccatcaacgg cccttcgatc acgttgatcg gccggccgcc ttcagcttca atgcgagccc
     2161 gcacttcctc ggtgtcttcc acgatgaagt tcgtgatgcc gtgaaccagt gcgtgggcga
     2221 ggcgttgatc gacgccctgg ttgcgccact cgaggttctc ttctttcttc gcggcgccgg
     2281 ttttgaattt atcggcgatt tcaagcaggc gatccgtgcc gtcctcgcga cggttaagca
     2341 ccacgtcttc cacgcgttcg cgcagttcgg gatcgagatc ctgatacacg ccgagctgac
     2401 ccgcgttcac gatacccatg tccatgcccg cctggatcgc gtggtagagg aacacggtgt
     2461 ggatggcttc acgcaccgga tcgttgccgc gaaacgagaa cgacacgttc gacacaccac
     2521 cgctgatctt cgcgtagggc aggttttcct taatccagcg cgtggcgttg atgaagtcga
     2581 cggcgtagtt gttgtgctct tcaatacctg ttgcgatcgc gaaaatattc gggtcgaaga
     2641 tgatgtcttc cggcgggaag cccacttcat tcacgaggaa atcgtacgag cgcttgcaga
     2701 tctgcgtctt gcgttcgtag gtatcggcct ggccgtcttc gtcaaaggcc atcacgactg
     2761 ctgccgcgcc gtagcggcgg atcagcgtgg cgtgatggcg gaacgcgtct tcgccttcct
     2821 tcagcgagat cgagttcacg accgccttgc cctgcacgca tttcagaccc gcttcgatca
     2881 cttcccactt cgacgagtcg atcatgatcg gcacgcgcga gatgtctggt tcggacgcga
     2941 tcaggttcag gaaccggacc atggccgcct tcgaatcgag catggcctcg tccatgttga
     3001 tgtcgatgat ctgcgcaccg ttctcaacct gttgccgcgc gacggccagc gcttcgtcga
     3061 actggttgtt gaggatcatg cgtgagaacg ccttcgatcc cgtcacgttg gtccgctcgc
     3121 ccacgttgat gaaaagcgaa ccgtcggtga cgttgaacgg ctcgaggccg gaaaggcgca
     3181 tggtgtgatc ggtcatgggc tgggctttag cttatgaatt ctgggagtcg ggcggccaat
     3241 ggctgcgcgc cgatttgcag cagtcgttca aaccactgcc ggaaatgcgg
//
LOCUS       DATGBK010001258         1883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_315958, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001258 DATGBK010000000
VERSION     DATGBK010001258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315958"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..1078
                     /locus_tag="VKJ77_17575"
     CDS             173..1078
                     /locus_tag="VKJ77_17575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47132.1"
                     /translation="MELRQLRYFIAVAEEMNITRAAGRLHMTQPPLSRQIQQIEESVG
                     LALFEHGSRPLRLTEAGRVFYTQAKRLIDESDELVPLTRRLAQLAERIVIGFVPSTLY
                     GALPQVIRAFREAAPQIELSLIEMFTLEQLGALKGGRIDVGFGRLRFDDVQLTREVLV
                     EERMIAALPEDHPLAGASVELTLADVARETLIVYPSSPRPSYADQQLSALRDHALEPA
                     AVHEVRELQTALGLVAAQVGVSLVPESVDGLRVHGVVYRHLPEPGPTSPIIMSRRLQD
                     EGQTTALFCSIARDLFRSSQAFTSR"
     gene            complement(1404..>1883)
                     /locus_tag="VKJ77_17580"
     CDS             complement(1404..>1883)
                     /locus_tag="VKJ77_17580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47133.1"
                     /translation="FCSANPDDGVCRPQRESSFTEQDYAELFKHPDIQAELARAADDH
                     SIGQVRAAFVMAPALVQALQPASLEHLHTPVDIMLGDLDTTAPPATNGLVAVRMIPNA
                     SLTELSGVGHLDFLSTCTKLGLAKVPICKTRVPQADTHARAIQAAQAFFDHQLGVTH"
BASE COUNT          370 a          549 c          580 g          384 t
ORIGIN      
        1 ccgaatccac tgcgcgcccg tcaatgattg catgccggca gacgccttgt ttgccggttc
       61 gcccattgcc cgtgccacaa tcacggcctg tgcgcctgtg aaacgcgggc gcccgacatc
      121 ttccattgca atcttcgcaa catcgctgga tctttaaccg tttgaggtct gcatggagct
      181 gcgacaactc cgctatttca ttgcggtagc cgaagaaatg aacatcacgc gcgcggccgg
      241 tcgtctgcac atgacgcagc cgccgcttag ccggcagatc cagcagatag aagaaagcgt
      301 cgggttggcg ctgttcgaac acggttcgcg gcccttgcga ctgaccgaag cgggccgtgt
      361 tttctacacg caggcaaagc gcctgatcga tgaaagcgac gagcttgtgc cgctcacgcg
      421 caggctcgcg caactcgcag aacgcattgt gatcggcttc gtgccgtcta ctctttatgg
      481 tgcactgcca caggtcatac gggcttttcg cgaggccgct ccgcagatcg aattgtcgct
      541 gatcgagatg ttcacgctcg aacaactcgg cgcgttaaag ggcggacgga ttgatgtcgg
      601 ctttggacga ctgcgtttcg acgacgtgca actgacgcgc gaagtgctgg tcgaggaacg
      661 gatgattgcc gcgctgccgg aggatcatcc gttagcgggc gcttcggtgg agttgacgct
      721 tgcggatgta gctcgcgaga cgctgatcgt gtatccgagc tcaccgcgcc cgagttatgc
      781 ggaccagcag ttatcggcgt tgcgcgatca tgcgcttgaa cctgccgccg tccacgaagt
      841 gcgggagttg cagacagcgc ttgggctcgt tgcggcgcaa gtgggcgtgt cgcttgtacc
      901 ggagagcgtc gacgggttaa gggtgcatgg cgtcgtctac cggcacctgc ccgaacccgg
      961 ccccacgtcg ccgatcatca tgagccgccg ccttcaggat gaagggcaga cgacggctct
     1021 tttctgttcg atcgcacgtg atctgtttcg cagtagccag gcttttacaa gccgctagtc
     1081 gacacactgt tcgctgtgga atgagtggca cgaaaaaaaa gtcccaccca ggcgggatgg
     1141 gacttaagcg cgacgaggat caccatcgtc gcgggacaca ccctcggaag ggtgaagcta
     1201 gtgtcttcgc attcgcgccg aaaggaaaca atgccggcct agatttgaca aaatttgacg
     1261 attcgggttg gatcgggtgc tcccccgcgc taaacgatga attcgcgcgc cggttaggtg
     1321 ctggattgct cgcgatgcca ggggtccaga gagcggactt cattcactgc caaccggtta
     1381 gcccctggcc gtctgaaacg tagtcaatgc gtcacgccaa gctgatgatc gaagaaagcc
     1441 tgagccgcct ggatcgccct cgcatgagta tcggcttgcg gaacgcgggt tttgcagatc
     1501 ggcaccttgg ctagtccaag cttcgtacac gtcgacagga aatccagatg acccacaccc
     1561 gaaagctccg tgagcgaagc attcgggatc attcggactg cgacaaggcc gttcgtcgcg
     1621 ggcggcgcgg ttgtatcgag atcgcccagc atgatgtcga ccggcgtgtg caaatgttcc
     1681 aggctggcag gttgcagcgc ctgcacgagt gccggcgcca tcacgaacgc ggcgcgcact
     1741 tgcccgatgc tgtggtcatc ggctgcacgg gccaattccg cctggatgtc aggatgttta
     1801 aacagctctg catagtcctg ttccgtgaag ctggactcgc gctgcggacg acacacgcca
     1861 tcgtcgggat tcgcactgca gaa
//
LOCUS       DATGBK010001259         4730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_338942, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001259 DATGBK010000000
VERSION     DATGBK010001259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4730
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338942"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..267
                     /locus_tag="VKJ77_17585"
     CDS             <1..267
                     /locus_tag="VKJ77_17585"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HMC47134.1"
                     /translation="QLLVIEAVPTLLASEVTQQLVIPTIGIGAGIECSGQVLVLHDML
                     GIFPGKRPRFVKDFMQGQPSILAAVEAYVRAVREKTFPGPEHTF"
     gene            complement(335..1151)
                     /locus_tag="VKJ77_17590"
     CDS             complement(join(335..803,802..1151))
                     /locus_tag="VKJ77_17590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611267.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HMC47135.1"
                     /translation="MGTPIIDDELWALIEPLLPPPKPRRKKYPGRRPVPDRAALNGIL
                     FVFKTGIRWCDLSIKLGFGSGPTCWRRLRDWQKAGVWDRLHQLLLTKLREAGKLDFSR
                     AAVDSSSVRAVGAGEKTGPNPTDRSRPGSKHHILVDANGVPISAILTGANRNDVTQLL
                     PLVDAIAPIRGARGRPLQKPKVIYADHGYDSEPHRRKLRKRGIKPVIAKRRTEHGSGL
                     GKYRWVVERTHAWLHNFRRLRIRFERRADIHEAFLKLGCSLVCWNIFKRTEQSF"
     gene            complement(1240..3033)
                     /gene="pabB"
                     /locus_tag="VKJ77_17595"
     CDS             complement(1240..3033)
                     /gene="pabB"
                     /locus_tag="VKJ77_17595"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008153 - para-aminobenzoic acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HMC47136.1"
                     /translation="MIMQQRSEVFALLDDCDSTAERRSSRLYASFLHERSCHDAAQLD
                     EVCASVEIDLRDGLHAVVLADYEFGRNLQLAQPGNAALRFLLFRECTLLSREEANQWL
                     VARDNGLADQPSVAGVANVEESVTGDAFEQAIAAVQDALQAGDSYQINYTFRLAFDVF
                     GSAVGLYRRLRERQPVQYGALIALPDGRDVLSCSPELFIQREGDVLQARPMKGTAPRS
                     ADPEWLRLDPKNRAENVMIVDLLRNDMSRVAVTGSVRVPRLFSVEAYNSVWQMTSTVG
                     ARLLPGATFAHILRALLPCGSITGAPKHKTMQLIDALESTPRGIYTGAIGWLDKSQNF
                     CLSVPIRTLEIQRGRGRMGVGAGIVLDSVAADEFEECELKSQFLTGSDPGFQLFETTF
                     ATREQGVRHGDRHLARLAASAQWCGFPFDRTLLQKRIEETCASFEAKAGYRLRIALSK
                     SGEITVTSAPLVPLAASTVDVLLASEYGFAPRSADDPLLRHKTTSREEYDRAWREAEA
                     LGAFDMLFFNERGELTEGGRSNVFVKLNGRWSTPPLDAGLLPGVMRGVMIEELDAEER
                     TLTLEDLERAESVMICNALRGAMAARLKRLS"
     gene            complement(3068..4210)
                     /gene="dnaJ"
                     /locus_tag="VKJ77_17600"
     CDS             complement(3068..4210)
                     /gene="dnaJ"
                     /locus_tag="VKJ77_17600"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006417099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HMC47137.1"
                     /translation="MAKRDYYEVMGVAKNASDDEIKKAYRKLAMKHHPDRNPDNKDSE
                     ARFKEVKEAYEMLSDPQKRAAYDQYGHAGVDPNMAGAGQQGFGGFADAFGDIFGDIFG
                     QAAGGGAGASRGRAGPQVYRGADLRYSMEISLEQAAHGYDTQIRVPSWVNCEICKGSG
                     AKPGTKPETCPTCQGQGTVRMSQGFFSIQQTCPKCHGTGSHIPEPCGHCHGAGKVKET
                     KTLEVKIPAGIDDGMRIRSSGNGEPGINGGPSGDLYVEIHIKQHSVFERDGDDLHCQM
                     PIPFTTAALGGEIEVPTLAGRASFTVPEGTQSGKTFRLRSKGIKGLRSSIAGDLYVHV
                     QVETPVKLTDQQRDLLKQFERSLTEGGARHSPQSKSWFDRVKSFFD"
     gene            complement(4545..>4730)
                     /locus_tag="VKJ77_17605"
     CDS             complement(4545..>4730)
                     /locus_tag="VKJ77_17605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47138.1"
                     /translation="ATASQKLGEKMYADMAAAQGAAGAAAGGANSAGAAGGPGAQAAP
                     EQHDDVVDADFKEEKKD"
BASE COUNT          911 a         1523 c         1316 g          980 t
ORIGIN      
        1 cagttgctgg taatcgaagc tgtgcctacg ctgttggcta gtgaggtgac gcagcagttg
       61 gtcatcccga caattggtat tggtgccggg atcgagtgtt cgggccaagt gctggtgctg
      121 cacgacatgc tcgggatttt ccccggcaaa cggccgcgct tcgtcaaaga cttcatgcaa
      181 gggcagccga gtattcttgc cgccgtcgaa gcgtatgttc gcgccgtcag ggagaagaca
      241 tttcccggac cggagcatac gttttaaggg ggttgttgtt ctgtctgggg cagcgttcgt
      301 gttcgacacg cttcgcttct acttagagac tgtttcaaaa agactgctcc gtacgcttaa
      361 agatgttcca gcagacgagg gagcaaccga gtttgaggaa tgcttcgtga atgtcggcgc
      421 gacgctcgaa gcgaatgcga agacgacgaa agttgtggag ccatgcgtga gtgcgctcga
      481 ccacccagcg atatttgccg agaccactgc cgtgctcggt acggcgcttc gcgatcaccg
      541 gcttaatgcc gcgtttgcga agtttccggc gatgtggttc ggagtcgtag ccgtgatcgg
      601 cgtaaatgac tttcggcttc tggagcggcc ggccacgtgc gccgcgaatc ggcgcaatgg
      661 catcgacgag cggcagcaat tgggtaacgt cgttgcggtt cgcgccggtc aggatggcac
      721 tgatggggac gccattcgca tcgacgagga tgtgatgttt ggaaccgggt cgcgagcgat
      781 ccgtggggtt cgggccagtt ttcgcccgcc ccaacggctc gcaccgacga tgaatcgacc
      841 gctgctcgtg agaaatcgag cttgccggct tcgcgtaact tcgtgagcag caactggtgc
      901 agccggtccc acacgccggc cttttgccag tcgcgcaagc gccgccagca ggtcgggccc
      961 gaaccaaatc ccaacttgat tgacaggtcg caccagcgta tcccggtctt gaacacgaac
     1021 aggatgccgt tcagtgcagc ccggtccgga accgggcggc ggcctggata tttcttgcgt
     1081 cgcggctttg gcggcggcag caaaggttcg attaatgccc acagctcgtc atcaatgatc
     1141 ggcgtgccca tccccttggt tcctgttgtt cagatggcca aggttaacag cttgccgaca
     1201 aggttaacag ccccctcggg atctttttga aatggtctct tagctcaacc gcttcaatct
     1261 cgccgccatc gcgccacgga gcgcgttgca gatcatcacc gattccgcac gctccagatc
     1321 ctcaagagtc agcgtgcgtt cctccgcatc cagttcttcg atcatcacgc cacgcatcac
     1381 gcccggcaac aatcctgcgt cgagcggtgg cgtgctccaa cgaccattga gtttcacgaa
     1441 cacgttcgat cgcccccctt ccgtcagctc tccgcgctcg ttgaaaaaca gcatgtcgaa
     1501 cgcgcctagc gcttcggcct cgcgccacgc acggtcatac tcttcacgcg acgtcgtctt
     1561 gtgccggagc aacggatcgt ccgccgatcg cggtgcgaag ccatattccg atgccagcaa
     1621 aacatcgacg gtcgaagccg ccaacggcac gagcggcgca ctcgtcaccg tgatctcacc
     1681 gcttttgctc aacgcaatcc gcaaccgata acccgccttc gcttcaaagc tcgcgcaggt
     1741 ctcttcaata cgcttctgta acagcgtccg atcaaacgga aacccgcacc actgcgcgct
     1801 ggcagccagc cgtgcaagat gccgatcgcc atgacgaacg ccttgttccc gcgtagcaaa
     1861 agttgtctcg aagagctgga aacccggatc cgagccggtc aggaattgag acttcaattc
     1921 gcactcctcg aattcatccg cggcaacgct gtccagcaca atgcccgcgc ccacgcccat
     1981 cctgcctctg ccgcgctgta tttccagcgt ccggatcggc accgataaac agaagttttg
     2041 gctcttgtcc aaccagccga ttgcgcccgt ataaataccg cgcggagtgc tttcaagcgc
     2101 gtcgatcagt tgcatcgtct tgtgcttcgg cgcgcctgtg atcgagccac atggcaaaag
     2161 cgcgcgaagg atatgcgcga aggtggcccc gggaagcaag cgcgctccca ccgtcgatgt
     2221 catctgccaa acggagttgt atgcctcaac cgaaaacaag cgcggcaccc gcacgcttcc
     2281 cgtgactgcg acacgcgaca tgtcgttacg cagcaagtcc acgatcatca cgttttcggc
     2341 gcgattcttt ggatcaagcc gcagccattc cgggtccgca ctgcggggcg ccgtaccttt
     2401 catcggccgc gcttgcagca cgtccccctc gcgctggatg aacaactcgg gcgagcaaga
     2461 aagcacatcg cggccatcgg gcagtgcaat cagcgcgccg tattgcaccg gctggcgctc
     2521 ccgcagccgt cgatataacc caactgccga gccaaagaca tcgaaggcga gacggaacgt
     2581 gtagttgatc tgataagaat caccggcctg caacgcgtcc tgaacggccg cgatggcctg
     2641 ctcgaatgca tcgcctgtca cgctctcttc aacattcgcg acacccgcca ccgatggctg
     2701 gtcggccagg ccgttatcac gcgcgacaag ccattgattc gcctcttcac gcgataacaa
     2761 cgtgcactcg cgaaacaaca aaaagcgcag cgcggcattg ccgggctgcg ctaactggag
     2821 gttacggcca aattcataat ccgcgagcac gacggcgtgc aatccgtcgc gcaggtctat
     2881 ttcaacactc gcacatactt cgtcgagttg cgcggcgtca tgacacgagc gttcgtgcaa
     2941 aaaactggcg taaaggcgac tcgaccgcct ttcggcggtc gagtcgcaat cgtcgagcag
     3001 cgcgaaaacc tcgctgcgtt gctgcatgat cattgccttg gtcgagggaa ccttagtcga
     3061 agaaacctca atcgaagaaa ctcttcacgc gatcgaacca gctcttgctt tgcgggctat
     3121 gacgcgcgcc gccttccgtc agtgaacgct cgaactgttt gagcagatcg cgttgctggt
     3181 cggtgagctt gaccggcgtt tcgacctgca catgcacata taggtccccg gcaatgctcg
     3241 agcgcaatcc cttgataccc ttgctgcgca gccggaacgt cttgcccgac tgcgtgcctt
     3301 ccggcacggt gaaactcgcg cggccggcca gcgtaggcac ttcgatctca ccgccaagcg
     3361 ccgccgtggt gaacggaatc ggcatctggc aatgcaggtc gtcgccgtcg cgttcgaaca
     3421 ccgaatgctg cttgatgtga atctcgacgt acaagtcacc gctcggaccg ccgttgatgc
     3481 ccggctcgcc attgcccgac gagcgaatcc gcatgccgtc gtcaataccg gccggaatct
     3541 tcacttccag cgtcttcgtt tccttcacct tgcctgcgcc gtggcaatga ccgcacggct
     3601 caggaatgtg gctgccggtg ccatgacact tcgggcaagt ctgctggatg ctgaaaaagc
     3661 cctgcgacat gcgcacggtg ccttgcccct gacacgtcgg acaggtttcc ggcttggtgc
     3721 cgggcttcgc gcccgagccc ttgcaaatct cgcaattcac ccagctcggc acgcgaattt
     3781 gcgtgtcgta gccgtgcgcc gcctgctcca gcgatatttc catgctgtag cgcaaatccg
     3841 cgccgcgata aacctgcgga cccgcgcgcc cacggctcgc tcccgcgcca ccgccggccg
     3901 cctggccgaa gatgtcgccg aaaatatcgc cgaatgcatc ggcgaatccg ccaaaacctt
     3961 gctgacctgc accggccatg ttcggatcga cgccggcgtg cccgtattga tcgtaggctg
     4021 cgcgcttttg cggatccgag agcatttcgt aggcctcttt gacctccttg aaacgcgctt
     4081 ccgaatcctt gttatccgga ttgcggtcgg ggtgatgctt catcgcaagc ttgcgataag
     4141 ccttcttgat ttcgtcgtcg ctcgcattct tcgcgacgcc cataacctcg tagtaatccc
     4201 gtttcgccat atcggttcag cgccaccgcg cctgatcgga gatcaggtcc ggcagctccc
     4261 tcttggatgc ctggagtctt gcgactcatg tggttcgtcg acgcctggcc ttcatgcatg
     4321 attcgcgcga tcaaaagatg atcagcgcgc ttgggtcttc ccgcacaaag cgcagcgccc
     4381 tctaaaaaaa caacgtgccc gggaagccat ttggctcgcc aggcgcgctc ttcgtctgta
     4441 cgctcagtcg cgcacaagac atttttcgtc gcggtcccgt gcaaagccga agctgcacga
     4501 gaccggttcc ttcatcgacg aatcgctgat gcggttcaat cgacttagtc cttcttctct
     4561 tccttgaagt cggcatcgac aacatcgtca tgctgctccg gcgccgcttg cgcaccgggg
     4621 ccacctgctg cgcccgccga attcgcccca cccgctgccg cgcccgccgc accttgcgcc
     4681 gcagccatgt cggcgtacat cttttcgccg agtttctgcg acgccgttgc
//
LOCUS       DATGBK010001260         3218 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_246400, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001260 DATGBK010000000
VERSION     DATGBK010001260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246400"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..435
                     /locus_tag="VKJ77_17610"
     CDS             <1..435
                     /locus_tag="VKJ77_17610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I poly(R)-hydroxyalkanoic acid synthase"
                     /protein_id="HMC47139.1"
                     /translation="CKPARLTMCGTPVDLGCIDMPSYVLATQEDHIVPWKGAYRTTQL
                     VGGGKTQFVLGASGHIAGVINPASKNKRSFWTDGKLGDDAQAWLSSAESKQGSWWTHW
                     MDWLKPHAGKPRAAPKRPGNAKYKPIEPAPGRYVRKTGADPV"
     gene            806..2713
                     /locus_tag="VKJ77_17615"
     CDS             806..2713
                     /locus_tag="VKJ77_17615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012349331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC47140.1"
                     /translation="MIDQPANQVQARQSHVRTSVRRTLAVCAALVLVAVAALIGHAVA
                     MQSELDNLRDAAQHRLDMVGAGLEGDLKRLDYLPSLLEMTPSVFALLDAPGNGTLRDE
                     VDRYLQGVNATAGATSLYVLNRAGVGIAASDWNQPGTPVGADLSFRPYVRDALAHGRG
                     SFYGMGFTSKRAGYYLSYALYHEGQLRGIATVKVNLEDAALEWRKLPGNVMLVDERDV
                     VILSSRDEWKFRPLAPLTQQALADIASTRPYGDATLAPLDWRVTKRLDAGASLVRLNG
                     SPYLATTRPLTQQAGWHLIVLDDVAPVGTSAWVLAITAALGTAVMLLLATVIAQRQRA
                     LRQRLAGQAALQAAHDSLEAKIVGRTAELRSAVAQLGEEVEVRKAVEADLRVTQGELV
                     HTGKMAALGQMSAGMVHELNQPLAALRTLSDNACVLLDKDRLGDVRGNLQRIAYLVDR
                     LGRLTYQLKAFAHKTSPTRVPVPVQQMIANAQFLVAERLRDNDVELVVQVMPAGLAAL
                     AEEARLEQVLVNLLGNAIDAMAASPQRRLRVEASVADTDGERCVIQVIDSGPGIRADI
                     LPRLFEPFITSKPAGAGLGLGLMISAHIVRELGGSLRAQNREGGAMEGGGACFVIELP
                     LAATLKVEANE"
     gene            2706..>3218
                     /locus_tag="VKJ77_17620"
     CDS             2706..>3218
                     /locus_tag="VKJ77_17620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019658319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HMC47141.1"
                     /translation="MSDQQAIRVIFVEDEPDVRMGSTQALELAGLEVDGFASVEEARS
                     HIKAGVPAVVLCDVKLPGMPGTQWLNEIRTIDPDLPVILVTGHGDIAMAVQAMRQGAY
                     DFIEKPFPSEHLVAVVRRAAEKRYLTLQVQALRDRIENAHGIQAMMLGRSAQMQHVRE
                     TVLTLAGTSAD"
BASE COUNT          604 a          987 c         1081 g          546 t
ORIGIN      
        1 tgcaagccgg cgcgcctcac gatgtgcggc acgccggtgg acttggggtg catcgatatg
       61 ccgagctatg tgctcgccac gcaggaggac cacatcgtgc cgtggaaagg cgcgtatcgc
      121 acgacgcaac tggtcggtgg cggaaaaact caatttgtac ttggcgcgag cggtcatatc
      181 gcgggcgtga tcaaccccgc gtcgaagaac aagcgcagct tctggaccga cggcaaactg
      241 ggtgacgacg cgcaagcgtg gctttcctcc gcagagtcga aacaaggcag ctggtggacg
      301 cactggatgg actggctgaa accgcacgcc ggcaagccga gagcggctcc caagcgaccc
      361 ggcaatgcga agtacaagcc gatcgagccc gcgccggggc ggtacgtcag gaagactggc
      421 gcagatccgg tgtgagtcca ccggtgagcc catcgatgag cccgcaggtg agcccacggc
      481 aaacctctgt ataaaagaac gaaggaatgg cgtgtttgac gggaattccc gggggtgttc
      541 cggcacgcgt gcgttggtat gatttaagca ctatggctgg aagcgtcata cgcgctcggc
      601 gacgagcaaa ctgataggcg cttcgaaccg cggccgggcg ccttccgggc atcaggaacc
      661 gcggtcaggc ctccattcca agggtcacgc gtcgtgttgc atgcggcgca aagcccaaga
      721 ggagacagaa catgacccgg tcgacgttca gggctgcgct gcggctcgtc cacgctatcg
      781 gacatgtgtt tcgggccagc cgcctgtgat tgatcagcct gccaatcagg ttcaggcacg
      841 gcaaagccat gtcaggacga gcgtccgacg cacgctcgcc gtatgcgcgg cgcttgtgct
      901 cgtcgcggtc gccgcgctga tcggacatgc agtggccatg caatccgagc tggacaacct
      961 gcgcgatgca gcccagcacc gtctcgacat ggtgggcgcg ggacttgagg gcgatctgaa
     1021 gcgtctggat tacctgccgt cgctgctgga gatgacgccc agcgtattcg cgctgctcga
     1081 tgcccccggc aacggtaccc tgcgcgacga agtagatcgt tatctgcagg gtgtcaacgc
     1141 aacggccggc gcgaccagcc tctatgttct caaccgggcg ggagtgggaa tcgcggcgtc
     1201 cgactggaac cagccgggta cgccggtcgg tgcggatctc tcgtttcggc cctacgtgag
     1261 ggacgcactg gcgcacggac gcggcagctt ctacggcatg ggtttcacca gcaagcgcgc
     1321 cggatattac ctgtcctatg ccctctacca cgaaggccag ttgcgcggca tcgccaccgt
     1381 caaggtcaac ctggaagacg ccgcgctcga atggagaaaa cttcccggca atgtcatgct
     1441 ggtcgacgaa cgcgacgtag tgatcctgtc ttctcgcgat gagtggaaat tccggccgct
     1501 ggcaccgctg acgcagcaag cgctcgcgga tatcgccagt acgcgcccct acggcgatgc
     1561 cacgctggcg ccgctcgact ggcgtgtgac aaagcgcctt gacgccggcg cctcactggt
     1621 tcgtttgaat ggcagccctt atctggctac aacgcggccg ttgactcagc aggctggttg
     1681 gcatctgatc gtgctcgacg acgtggcgcc cgtaggcacg agtgcatggg tgctcgccat
     1741 caccgccgcg ctggggacag cggtgatgct gttgctggcg acggtgatcg cgcaacgcca
     1801 gcgtgcgctg cgccaaaggc tcgccggcca ggcggccctg caggcggccc acgacagcct
     1861 cgaggcgaag attgtcggtc gcacggccga attgcgtagt gcggtcgctc aactcggcga
     1921 agaggtagag gtgcgcaagg ccgtcgaggc cgacctgcgg gtcacgcagg gtgaactggt
     1981 gcatacgggc aagatggcag cattgggcca gatgtcggcc ggcatggtgc acgagctgaa
     2041 tcagccactg gccgcgttgc gcacgctctc ggacaacgcg tgcgtgctgc tggacaagga
     2101 tcggctgggc gacgtgcgcg gcaatctgca gcgcattgcg tatcttgtgg atcgccttgg
     2161 acgcctgacc tatcagctca aggcttttgc gcacaagacc agtcccacac gcgtgcccgt
     2221 gcccgtgcag caaatgatcg ccaacgcgca gttcctggtc gcggaacgtc tgcgcgacaa
     2281 cgacgtggaa ctggtggtac aggtgatgcc cgccggcctc gctgcactgg ctgaggaggc
     2341 acggcttgaa caggtgctgg tcaacctgct gggcaacgcc attgacgcca tggcggcctc
     2401 gccgcagcgc cgcctgcgcg tagaagccag cgtggccgac acggacggcg agcgctgtgt
     2461 cattcaggtc atcgatagcg gccccggcat acgcgccgac atcctgccgc gcctgttcga
     2521 accgttcatc accagcaaac cggcaggcgc cggactgggg ttgggcctga tgatatcggc
     2581 ccacatcgtg cgcgaactgg gcggcagcct gcgcgcccag aatagggagg gaggcgcgat
     2641 ggagggaggc ggcgcctgtt tcgtgatcga attgccgctt gcggccacac tgaaggttga
     2701 agctaatgag tgaccaacaa gccatccggg tgatcttcgt cgaggacgag cccgatgtac
     2761 gcatgggcag tacgcaggct ttggagctgg ccggactcga ggtcgacggc tttgccagcg
     2821 tcgaggaggc gcgttcgcac atcaaggccg gcgtgccggc tgtcgtgcta tgcgatgtca
     2881 agctgcccgg catgccgggc acccaatggc tgaacgagat ccgcaccatc gaccccgatc
     2941 tgccggtgat cctggtcacg ggccatggcg acattgcgat ggccgtgcag gccatgcgcc
     3001 agggtgctta cgatttcatc gaaaaacctt tcccctcgga acacctggtc gcggtggttc
     3061 gtcgcgcggc cgagaaacgt tatctgacgc tacaagtgca ggcgctgcgc gaccggatcg
     3121 agaacgctca cggcatccag gcgatgatgc tcggacgctc ggcgcagatg cagcacgtgc
     3181 gcgaaacggt cctgacgttg gcgggcacct cggccgac
//
LOCUS       DATGBK010001261         5428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_270144, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001261 DATGBK010000000
VERSION     DATGBK010001261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5428
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270144"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VKJ77_17625"
     CDS             <1..489
                     /locus_tag="VKJ77_17625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HMC47142.1"
                     /translation="EILDVLGISRAQMAPLPIQNACTSRVKTLIPLTTTEDLDSLQPR
                     FEKIEALCERIGSTGLYPYATCDADRQIFDARQFPRASGYPEDAATGIAASALSFGLL
                     TNGMVEASERTITIRQGRAMKRPSQISVRFSFDAGLEPGRPDGCWLGGPVCFEAHAGA
                     PS"
     gene            486..1016
                     /locus_tag="VKJ77_17630"
     CDS             486..1016
                     /locus_tag="VKJ77_17630"
                     /inference="COORDINATES: protein motif:HMM:NF025939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC47143.1"
                     /translation="MTIDIPGRLAQLGMTLPFAPSPRGAYVSAVIHDGIAYISGQVSR
                     DGDEIITGPVDHDTPPDVIRHAARTCVLRALSVLVATLPAATAVERILFLRGFVNAVP
                     GFVNHSQVMDEASTLLHDIFGESGRHARSALGVASLPGNGLLEIELTVALNTVVPPVP
                     PPVPHDRPQEHVDTRQ"
     gene            1095..1847
                     /locus_tag="VKJ77_17635"
     CDS             1095..1847
                     /locus_tag="VKJ77_17635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010097614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47144.1"
                     /translation="MNRRQLLQLSLAAAPAMLLSRVVRAADAELIVGSNVGAPPFVFK
                     QGDTYSGFDVEVWNEIAKGMNRKWRLQPMEFGALIPALQTHNIDVIVSQLFIKPERQQ
                     VIDFSDPYYKSGLIALTRADNTTIHTPADLAGKHIGTETGTLAVGYIKDHIKDATVEQ
                     LPSINNALLALEAGRTDAVVYDKPQMLYYANNAGKNKVRVVQPALEGLDVGIGFQKGS
                     PLVAAVNLQLAAMKADGRLQALSRKWFGEASS"
     gene            1844..2500
                     /gene="glnP"
                     /locus_tag="VKJ77_17640"
     CDS             1844..2500
                     /gene="glnP"
                     /locus_tag="VKJ77_17640"
                     /EC_number="7.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006028339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter permease GlnP"
                     /protein_id="HMC47145.1"
                     /translation="MTFDWAAVIAALPDLLQGLQLTLLIALAGLAGGIVLGILAGVAL
                     TYGGRLTVLPAQLYVALIRGTPIVVQVMFVYFALPIMMDIRISGISAAIITLVVNSGA
                     YNAEIIRGALDGVPFGLREAGLAMGLPFRTVLLHVITPIAFRRALPAMGNQFVNLVKD
                     TSIFLVIGVGELTRRGQEIMAANFRAVEIWTAVAIIYLLVISLLALSLRVLERRVRLP
                     "
     gene            2497..3225
                     /gene="glnQ"
                     /locus_tag="VKJ77_17645"
     CDS             2497..3225
                     /gene="glnQ"
                     /locus_tag="VKJ77_17645"
                     /EC_number="7.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006388207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015424 - ABC-type amino acid transporter
                     activity [Evidence IEA];
                     GO_process: GO:0003333 - amino acid transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter ATP-binding protein
                     GlnQ"
                     /protein_id="HMC47146.1"
                     /translation="MSMIEFQQASKHFGANVVLHPLDLAIERGEVAVIVGPSGSGKST
                     MLRCINGLEKISGGDLRVDDLSVLGSARDVRRIRLEAGMVFQQFNLFPNLTAMQNVMF
                     GPIRARRQTRAEAREIATALLHKVGLSERMHHYPSQLSGGQQQRVAIARALAVQPKLM
                     LFDEPTSALDPELRQEVLKVMQTLASEGMTMVVVTHEMGFAKRVGSRLLFMEASRVVH
                     DGKPVEMLSSPPGERFREFLQHVH"
     gene            3273..4457
                     /locus_tag="VKJ77_17650"
     CDS             3273..4457
                     /locus_tag="VKJ77_17650"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HMC47147.1"
                     /translation="MISSHFEGDYGFRRDNVRHDNWREAPWNVWAFRHVHELIPTARI
                     PATSGLAEEPKVDATALTEHEFVLDGERRTVAAILRQTSTDAITVMRAGRFVADFHAP
                     NFSLQSRHILFSASKSVAGLLAGILVGDGLLDPEAPVAQYVPELAQSAFGDARVRHVL
                     DMRTSLAFNEDYLDPRGVYARYRRAGLWDPRRDGEEPETVIGFLASLPKGAGEHGGPF
                     HYCSPNSDVLGLVIERASGERYADFATTRLWQPLGLRQDGCVTVDFAGTARSGGGLCM
                     TARDLARIGELVRLGGVVGGRRLISADWVHDTLSGGSAEAWRQGTFAAWLPNGKYRNK
                     WYQIGNASGACFAIGIHGQWLYVDPLRETVIAKFSSQPEPTNNDLKRLNLALLEAIAA
                     MT"
     gene            4943..5293
                     /locus_tag="VKJ77_17655"
     CDS             4943..5293
                     /locus_tag="VKJ77_17655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC47148.1"
                     /translation="MLILFIDDHKDSADAFGEIASGLGHKVQVAYDGRSAMALTQTQS
                     FDVVFFDIELPDADGRELCRRVRNEGASRDACVIAVTGRTDLRDKDLEPFDGYLHKPI
                     SAAALEHALKFSEG"
BASE COUNT         1047 a         1736 c         1632 g         1013 t
ORIGIN      
        1 gagatcctcg acgtgctcgg catcagccgc gcgcagatgg cgcccctgcc gatccagaac
       61 gcctgcacaa gccgggtcaa gacgctgatt cctctcacca ccacagagga tcttgacagc
      121 cttcagccgc gcttcgagaa aatcgaggca ctgtgcgagc ggatcgggtc cacaggcctc
      181 tatccctacg ctacctgcga cgcagaccgg caaatcttcg acgcccgtca gtttccgcgt
      241 gcctcgggtt atccggaaga cgcagccacc ggcatcgcgg cgtctgcgct gtctttcggc
      301 ctcctgacca atggcatggt tgaagcgtct gaacggacca tcacgatccg tcagggacgc
      361 gcgatgaaac gcccgtcgca aatctcggtg cgcttcagtt tcgacgcagg cctcgagcct
      421 ggccgcccgg acggctgctg gctcggcggc ccggtttgct tcgaagcgca cgccggagca
      481 ccgtcatgac gatcgatatc cccggccggc tggcgcagct gggcatgacg ctaccgtttg
      541 cgccctcgcc gcgaggcgcc tacgtcagtg cggtgatcca cgatggcatc gcttatatca
      601 gcggccaggt cagccgcgac ggcgacgaga tcatcactgg cccggtcgat cacgataccc
      661 cgcccgatgt catccgacac gcggcacgga cttgcgtgtt acgcgccctg agcgtgcttg
      721 ttgcaacgct gccggccgcg accgcggtcg aacgcatcct gttcctgcgc ggttttgtca
      781 atgccgtgcc cggcttcgtg aaccacagcc aggtcatgga tgaggcctcg acgctgctcc
      841 acgacatctt cggtgaaagc ggccggcatg cgagatcggc gctcggcgtg gcaagtctgc
      901 cgggcaacgg cttgctcgaa atcgaactca cggtcgcgtt gaacaccgtg gttccacccg
      961 tgcctccgcc cgtacctcac gaccgtccgc aagaacacgt cgacacccgg caataagaca
     1021 caagccataa caaacaccgg accgtcctgg aaacggcagg cccggctcga ttcccttacc
     1081 gtaaaggaaa caccatgaat cgccgtcaac tgctgcaact cagcctggca gccgcgcccg
     1141 ccatgctgct gtcccgtgtc gtccgggctg ccgacgccga actgatcgtc ggctccaacg
     1201 tcggcgcgcc gcctttcgtg ttcaagcagg gcgacactta tagcggcttc gacgtcgaag
     1261 tctggaacga gatagcgaag ggcatgaacc gcaaatggcg cctgcaaccg atggagttcg
     1321 gcgcgctgat cccggcactt cagacccaca acatcgacgt catcgtgtcg caactcttca
     1381 tcaagccgga acgccagcag gtgatcgatt tttctgaccc ctactataaa agcggcctga
     1441 tcgcactgac ccgcgccgac aacaccacca tccacacccc ggccgatctt gccggcaaac
     1501 acatcggcac cgaaacgggc acgctcgcgg tcggatacat caaggaccac atcaaagatg
     1561 ccacggtcga gcagttgccc agcatcaaca acgcgctgct ggcgctggaa gccggccgca
     1621 ccgacgcggt cgtctacgac aaacctcaaa tgctttacta cgccaacaac gccggcaaga
     1681 acaaggtcag ggttgtgcag ccggctctgg agggcctcga tgtcggcatc ggcttccaga
     1741 agggcagccc actagtcgcc gcggtcaatc ttcaactcgc cgccatgaag gccgacgggc
     1801 ggctccaggc gctcagccgc aaatggttcg gcgaggcgtc gtcatgacct ttgactgggc
     1861 ggcagtcatt gccgcgctgc cggacctgct gcaaggcctt cagctcaccc tcctgatcgc
     1921 gttggctggc ctggccggag gcatcgtgct cggcatcctc gcgggcgtgg cgctgaccta
     1981 cggcggccgg ctcaccgtct tgccggccca gctctatgtt gcattgatcc gcggcacgcc
     2041 gatcgtggtt caggtgatgt tcgtctactt cgcattgcca atcatgatgg atatccgtat
     2101 cagcgggatc agcgccgcca tcatcacgct ggtcgtcaac tcaggggcct ataacgcgga
     2161 gatcatccgc ggcgcgctcg acggcgtgcc gttcggactg cgcgaggcgg gcctggcgat
     2221 ggggctgcct tttcgcaccg tgctgcttca cgtcatcaca cccatcgcct ttcggcgcgc
     2281 gctgccggca atgggaaacc agttcgtcaa cctggtcaag gacacctcga tttttctcgt
     2341 catcggcgtc ggcgaactga cccggcgggg ccaggaaatc atggccgcga actttcgggc
     2401 ggtggagatc tggactgcgg tggcgatcat ctacctgcta gtgatcagcc tgctcgcgct
     2461 gagtctgcga gtgcttgaac ggagagtacg cctgccatga gcatgatcga atttcagcaa
     2521 gcctctaagc atttcggcgc caacgtcgtg ctgcatcccc tcgacctcgc gatcgaacgg
     2581 ggagaggtcg cggtgatcgt tgggccatcc gggtccggta aatcgacgat gctacgctgc
     2641 atcaatgggc tcgaaaaaat cagcggcggc gacctgcgcg tcgacgatct cagcgtgctg
     2701 ggttccgcgc gcgacgtcag acgcatcagg ctcgaagccg gcatggtgtt ccagcagttc
     2761 aatctctttc cgaacctcac ggcgatgcag aacgtcatgt tcggaccgat ccgggcgcgg
     2821 cgccaaacgc gcgcggaagc gcgcgagatc gccaccgcac ttctgcataa agtcggcctg
     2881 tccgagcgga tgcatcacta tccgtcacag ctttccggcg gtcagcagca acgcgtcgcc
     2941 atcgcgcggg cgctcgcggt ccagccaaag ctgatgctgt tcgacgagcc gacttcggct
     3001 ctcgatccgg aactgcgcca ggaagtcctc aaggtcatgc agacgctcgc cagcgaaggt
     3061 atgacgatgg tcgtggtcac tcacgaaatg ggctttgcga aacgcgtggg ttcgcgcctc
     3121 ctcttcatgg aagccagccg cgtggtgcac gacggcaagc ccgtcgagat gctgtcgtcg
     3181 ccgccgggag aacgcttccg agaattcctg cagcacgttc attgatgtcc tcgctttttc
     3241 acgaccgcac gcaacaggag tctgcaggca agatgatctc ttcacatttc gaaggcgact
     3301 acggctttcg ccgggacaat gtccgccatg acaactggcg cgaagcgcct tggaatgtct
     3361 gggcttttcg tcatgtccac gagctgattc ccacggcgcg aatcccggcc acgtccggtc
     3421 tcgccgaaga acccaaggtc gatgccaccg cgctgaccga acacgaattc gtgctcgacg
     3481 gcgaacgccg cacggtcgcg gccattctgc ggcagacctc gaccgatgcg atcacggtga
     3541 tgcgagccgg gcgttttgtc gctgattttc acgcgccgaa ctttagcctg cagagtcgcc
     3601 acatcctgtt ttcggccagc aagtcagtcg ctggcctgct cgccggcata ctcgtcggcg
     3661 acggtcttct ggaccccgaa gctccggtag cgcagtacgt gccggagctc gctcagtcgg
     3721 cctttggcga cgcccgcgtc aggcacgtgc tggatatgcg cacgagcctc gcgttcaacg
     3781 aagactatct cgatccgagg ggcgtttatg cccgctatcg ccgggccggg ctatgggatc
     3841 cgcggcgaga cggcgaggaa ccggagacgg tgatcggctt ccttgcttcg ctgcccaaag
     3901 gcgccggaga gcacggcggt cctttccact actgctctcc caactcagac gtgcttggtc
     3961 tcgtgatcga gcgtgcctcg ggcgagcgct acgcggactt tgcgactacg cgtctatggc
     4021 agccgctcgg gttacgacag gatggctgcg taacggtgga cttcgccggc accgcgcgct
     4081 caggcggcgg cctgtgcatg acggcgcgtg atctggcgag gatcggcgag ttggtgcgcc
     4141 tcgggggcgt tgtgggcggt cgaaggttga tatcggcgga ctgggtacac gacacgctct
     4201 cgggcggaag cgccgaggca tggcgacaag ggaccttcgc agcctggttg ccgaacggca
     4261 agtaccgcaa caagtggtac cagatcggca atgccagcgg agcctgcttc gcgatcggca
     4321 tccatggtca gtggctatac gtcgacccgt tacgagagac ggtgatcgcc aaattctcgt
     4381 cacaaccgga accgaccaat aacgatctca agcgcctcaa tctcgcattg ctcgaagcga
     4441 tcgcggcgat gacgtgagga tagatgtccc tcaggattcg cgagcacgag ccacacgccc
     4501 ggcgaagtac gaaccgacaa atacggctag agcggttgta ataatcaccc atacgcccga
     4561 gccaaatcca aagtcgcgcc cgggatttgg ctgagacaca ggcgctaaaa gagacgcgtc
     4621 gatcgcggtc cccagcacgc tcatgatcag gtaagcgatc agcgacagaa tcacgccggc
     4681 tatgaccgcg ccccacgaga catggtgcag ccatcttgag tagtcagggg tcgcataggt
     4741 gctccctctg aacgggaaat cgattgtcga ccgggttgcc gaccaagccg cgccgcgcag
     4801 ctgctctgtg caatcgctgt tcccacacta tggagccgat taaagcttgc atcttcgttg
     4861 caaggcattc agaacgaacg cgcgatctcg ttcggttcat ctgcttccaa agcagcaaca
     4921 tccgcttaat accgagggaa tcgtgctcat cctgtttatc gatgaccata aagattcagc
     4981 cgacgcgttt ggcgaaatag cgtctggcct ggggcacaag gttcaagttg cgtacgacgg
     5041 ccgctcggca atggcgttga cccaaacgca gagtttcgat gtcgttttct tcgatatcga
     5101 attacccgac gccgatggcc gggagctatg ccggcgggta cgcaacgaag gcgcgtcgcg
     5161 cgatgcctgt gtgatcgcgg tgacgggcag gaccgatctt cgggacaagg accttgaacc
     5221 gttcgacggt tatctgcaca agccgatcag cgcggccgct ttggagcacg cgctgaaatt
     5281 ctcggaaggt tgaatcaccg catggcgttc ttgcgaccct cggcgttcgt cgcaacggcg
     5341 atcgcatcga gattctgcgg gtacgggaag ttcaagccga gcaactgccg catcgtcggg
     5401 ctggcgttct tgacgaacgt ttcgccga
//
LOCUS       DATGBK010001262         2413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_130629, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001262 DATGBK010000000
VERSION     DATGBK010001262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130629"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..503)
                     /locus_tag="VKJ77_17660"
     CDS             complement(<1..503)
                     /locus_tag="VKJ77_17660"
                     /inference="COORDINATES: protein motif:HMM:NF025123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter six-transmembrane
                     domain-containing protein"
                     /protein_id="HMC47149.1"
                     /translation="MSFVTPEIRMVESEKPAQRSATSTLKAIARAYPGKLFCTLSLVA
                     LENALLLAYPLFAGFAVDSIIRGDARNALFYAVIVLAFWAVGAARRAVDTRTFTRIYA
                     DLAVPVILNQRLQNQSTSTAAARVVLAREFVDFFEKHVPTMVTALVSIVGAVAMLLVI
                     EPWIGIA"
     gene            620..1216
                     /locus_tag="VKJ77_17665"
     CDS             620..1216
                     /locus_tag="VKJ77_17665"
                     /inference="COORDINATES: protein motif:HMM:NF025343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HMC47150.1"
                     /translation="MSRSSPERKGQIIAAALELFRQKGFADVSTRDLAEHAGLSRSHI
                     YHYFGDWNELRREAFVHFADEQLEEAGARLTDKPPVEALLGFIRDCLPASKDDGWGLW
                     LDAWDEAMHDAELARAYLSEIGRWQGLLRGIIEQGVEAKVFRCTSPERAARQIFALAM
                     GYADDLLLQPSVEAGEAALAEVVEVAEMVLGFRLNAGH"
     gene            complement(1287..1664)
                     /locus_tag="VKJ77_17670"
     CDS             complement(1287..1664)
                     /locus_tag="VKJ77_17670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47151.1"
                     /translation="MLTLKAGFTRALIGVALAGSLAACVVEPTRQVNVVQEAPARPDP
                     HMEAVHRMDQVNGRINSLWHHVDQRVSQGYYPPPQGDAFHHRLDVVRQEARDMASQHG
                     GGLSGDEQHTLNSELDGLQRAIQ"
     gene            complement(1819..2413)
                     /locus_tag="VKJ77_17675"
                     /pseudo
     CDS             complement(1819..2413)
                     /locus_tag="VKJ77_17675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346629.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
BASE COUNT          485 a          711 c          740 g          477 t
ORIGIN      
        1 ctggcgatgc cgatccatgg ctcgatcacc aataacatcg ccacggcgcc gactatggat
       61 accaacgcgg tgaccatcgt cggcacatgt ttttcgaaga aatcgacaaa ctcccgggcc
      121 aataccacgc gcgccgcagc cgtcgacgta ctttggttct gcagccgctg attaaggatc
      181 accggcaccg ccaggtcggc gtaaatccgc gtgaaagtgc gtgtatccac ggcccggcgc
      241 gcggcgccga ccgcccagaa cgccaatacg attaccgcgt agaacaacgc gttgcgggcg
      301 tcgccgcgaa tgatcgaatc gaccgcgaat ccggcgaaca gcggatacgc gagcaacagc
      361 gcgttctcca gcgcgacgag cgacaaagtg caaaacagct tgcccggata ggcccgggca
      421 atggctttga gcgtggacgt ggcggaccgc tgagcgggct tttcgctttc aaccatccgg
      481 atttcgggtg tgacgaatga catgaccgta ccttgggtaa aatcgccgct ataatttgag
      541 cgactgctca aattataatt gagcagtcgc tcaaagagca agctcaaccc atccgttcac
      601 gattgaaaag gaatcgaaca tgtcgcggtc gtcccccgaa cgcaaaggtc agatcattgc
      661 ggccgccctt gaattgtttc gccagaaagg cttcgccgac gtttccacgc gcgatctcgc
      721 cgagcacgcc gggttgtcgc gtagtcacat ctatcactac ttcggcgact ggaatgagtt
      781 gcgccgcgag gcgttcgtgc actttgccga cgagcaactc gaagaagccg gcgcgcgtct
      841 gaccgataaa ccgccggtcg aagcgttgct cggttttatc cgcgactgct tgccggctag
      901 caaggacgat ggttgggggc tgtggctgga tgcctgggac gaggccatgc acgacgctga
      961 actcgcgcgg gcttatttaa gcgagatcgg tcgctggcaa ggtttgcttc gcggaattat
     1021 cgaacagggt gtggaggcga aggtgtttcg ctgtacatcg ccggaacgtg ccgcccggca
     1081 aatcttcgcg ctggccatgg gttacgccga tgatctgctg ctgcagccct cggtcgaggc
     1141 tggcgaggca gcgcttgcgg aggtcgtgga agtagcggag atggtgttgg gttttcggct
     1201 caacgcgggg cattaacgag aatgtgcgcg ttgagctgaa caaccggccc cgcactacgg
     1261 gccagtcgtt cggcgcataa aagtgcttac tgaatcgcgc gctgcaagcc gtccagctcg
     1321 ctgttcagcg tgtgctgttc gtcacccgac aaaccgccac catgctggga agccatgtca
     1381 cgcgcttcct gccgcactac atccagccga tgatggaacg catcgccctg tggcggcggg
     1441 taatagccct ggctcacgcg ctgatcgacg tgatgccaaa gcgagttgat tcgtccatta
     1501 acctgatcca tccgatgaac cgcttccatg tgcggatcgg gacgtgcagg tgcttcctgg
     1561 acgacattga cttgccgcgt cggctcgacg acacacgccg ccagcgatcc cgcgagcgcc
     1621 acgccaatca gcgcacgggt gaaacctgct ttaagcgtca gcattggagt tctcctcgtt
     1681 tggtttgtaa ggttttttaa gttaagacga ctggagaaga acggcccacg cgccgccccg
     1741 gctgacgcca gagcggtcat caaatgtaac gctgtgtgtt tgaaagtctt gcgtgggccg
     1801 tttgttatcg ctgctctgtc acaacggcgc gaaatccagg cgacggcctt ctgcgttgct
     1861 gcgaatggcg atgtcgatga tggtcatgac atcgacggca tcttgcgacg tgactgggaa
     1921 cggttgccct cgagcaccga tgccgccagc gcacgataaa actctgcata agcgccgtcg
     1981 cgggtggcga attcctgacg caagtcatgg tcgccatcga cttctcgaag caggccggcc
     2041 gggttgtggc cgaactcggg attgccgggg cgcaaaccgg ctttgagctg gtcttcctgc
     2101 acatcgagac ctgttttcac gtagctgccg cgtgtgccgt gaatcgcgaa gcgcggcggt
     2161 tccagcgcgg ccagcgccgt ggcatgcagc acgatttcct tgtcttcgta gcccagcaac
     2221 agatgaacgt aatccggtgc gctcgcgtga tcgcggtgcg cgtggacgct cgcgaaaatg
     2281 gtttgcggac ggccgaagag cgtcaacgcc tgatcgatga gatgcggccc gagatcgaac
     2341 aacaagccgc cgccccgcga cgcttcctcg cgccagcgct gcggcacttt cggccggaag
     2401 cgatcgaaat gcg
//
LOCUS       DATGBK010001263         2959 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_84295, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001263 DATGBK010000000
VERSION     DATGBK010001263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84295"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..315
                     /locus_tag="VKJ77_17680"
     CDS             <1..315
                     /locus_tag="VKJ77_17680"
                     /inference="COORDINATES: protein motif:HMM:TIGR02913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAF repeat-containing protein"
                     /protein_id="HMC47152.1"
                     /translation="GVSSTANGFVHAFLYENGVMTDLGTLPGRSNSSAFGINNRGQIV
                     GESDIGNNSYSPHAFLFEHGMMTDLGTLPGDNFSEAVGITERGQIAGNSTSSAILWTR
                     EK"
     gene            complement(446..1141)
                     /locus_tag="VKJ77_17685"
     CDS             complement(446..1141)
                     /locus_tag="VKJ77_17685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006390981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family protein"
                     /protein_id="HMC47153.1"
                     /translation="MSRTTRLLTLLERLRAKRVPVTASELASDLAVSERTLYRDIATL
                     IEQGAPIHGEAGIGYVLRPGLFLPPLMLSEDEIDAVVLGLRYVDQRGDDVLRKAAAQA
                     LAKIDAVLNASGKDAMRAPTVHSGPPVPDFPVNAVPLTSLRAAIRGQCKLRIAYLDGQ
                     SEPTDRVVWPVVLGFLDNVRILGAWCEKRQDFRSFRTDRIVSADETGERYPGARAVLL
                     SRYRTHLAKSTPW"
     gene            complement(1232..2089)
                     /locus_tag="VKJ77_17690"
     CDS             complement(1232..2089)
                     /locus_tag="VKJ77_17690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007875476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47154.1"
                     /translation="MNKLNPIRAVSSLMALCLSTFLFASGAHAQALPDAIAKSKVIKV
                     AVNSIYPPMEYKDPESGDLVGFDIDLGNAIAKELGVKMDWQESAFEQLLPSLATGRVD
                     MILSGMSDVPGRRDTADFLDYLNSGAQFYILASRANEIKQATDLCGKSVGTSRSTSFP
                     ADTAAWSAKNCEAAGKPAITVSGTEDTSAARMQLKQGRIVAGVQGSETLPYAMKLESN
                     TYKPIGEPFATSPEGIAFAKSNPKLRDAVLGALNKLIANGTYAAIAAKWNLQSSAVKQ
                     VTLNAAALK"
     gene            complement(2147..>2959)
                     /locus_tag="VKJ77_17695"
     CDS             complement(2147..>2959)
                     /locus_tag="VKJ77_17695"
                     /inference="COORDINATES: protein motif:HMM:NF040249.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HMC47155.1"
                     /translation="GLWGFIHDASQTKRMHTGRAAEGGLLAALLAQQGVSGPTQVFED
                     VWGGFFNAFARDTQTPDALLADLGVVWKLMRCSIKPHAACRSTHAAVDATLELLHGRA
                     ADLDKLVGVHVRLSAFVNQMCGGRDIRTLASAQMSLPYAIATVLVNGHAGIGAYLDAQ
                     RHDPRIAAAMERVTLEIDPSMSDLDEPVITLALSDAEPRSQQIKVPLGDPRNPVSDAD
                     LADKYRVLAAMTIPQASVNALETAVLDLDNLADARTLAQWLRGDADTRPVVR"
BASE COUNT          589 a          913 c          871 g          586 t
ORIGIN      
        1 ggcgtgtctt ctaccgcaaa cgggttcgtg cacgcctttc tgtatgaaaa cggggtgatg
       61 actgacctgg gcacgcttcc cgggcgcagc aacagtagcg cttttgggat caacaatcgc
      121 ggccagatcg ttggcgagtc ggatatcgga aacaactcgt actccccgca cgcctttctg
      181 tttgaacacg ggatgatgac cgacctgggc acgctacccg gggacaattt cagcgaagcc
      241 gtcgggatca ccgagcgcgg ccagatcgcg ggtaactcca cgtcgagcgc tatcctttgg
      301 acacgagaaa aatgactgcc gatctctgat ggttcacaaa agtcaggttg tgcaaagcgc
      361 ggatgagctg gtgcaggtga tcaacgcgag gaacaggtaa gcgaaggcct acatactgac
      421 cacgcttaag cgaattacag tgcggctacc aaggcgtcga cttcgccaga tgcgtccggt
      481 accggctcaa tagcaccgct ctcgcccctg ggtaccgctc gcccgtttca tcggctgaca
      541 cgatcctgtc cgtgcgaaaa ctacggaaat cctggcgctt ttcgcaccac gcgccaagaa
      601 tccggacatt gtcgaggaag cccaacacga cgggccagac gacacgatcc gtcggctcgc
      661 tttgcccgtc cagatacgcg atccgcagtt tgcactggcc acgaatggcc gcgcgcaagc
      721 tagtgagcgg cacggcattg acgggaaagt ccggcaccgg agggccggaa tggacggtcg
      781 gggcacgcat ggcatccttg cccgacgcgt tcaatacagc atcaatcttc gctaatgcct
      841 gagcggcggc cttacgcaaa acgtcatcgc cgcgctggtc cacataccgc aggcccagca
      901 ccacggcgtc gatctcgtct tcgctcaaca tcagcggcgg caggaacaat cccggcctga
      961 gcacgtaccc tatgcctgct tcaccgtgta tcggcgcgcc ctgttcaatc agcgtcgcga
     1021 tgtcgcgata cagcgtgcgc tcggacacgg ccaggtccga cgcgagttcg gacgcggtca
     1081 ccggcacacg cttcgcgcga agcctctcca gcaaggtcaa taaacgagtg gttcgggaca
     1141 ccctgcctcc tgacaggttc tgacaggagc taaacgtacc atgaacttca cccagtgctt
     1201 cgatgccgcg cgcacttggt agggcagtta actacttgag tgctgctgcg ttcaacgtca
     1261 cctgcttgac cgcactcgat tgcagattcc acttggcagc aatcgccgcg tacgtcccgt
     1321 tcgcgatcaa tttattcagc gcacccagca ccgcatcgcg taacttcgga ttcgacttcg
     1381 caaacgcgat gccttcgggc gacgtcgcga acggctcgcc gatcggcttg taggtattcg
     1441 attcgagctt cattgcatat ggcaacgtct cactgccttg cacacctgcc acaattcgtc
     1501 cttgcttcaa ttgcatgcgt gcagcagaag tatcttctgt gccggacacc gtgatggcag
     1561 gcttgcccgc cgcctcgcag tttttcgcgc tccatgcggc cgtgtcagcc gggaaggacg
     1621 tgctgcggct cgtaccgacc gacttgccgc agagatccgt cgcttgcttg atctcgttcg
     1681 cacgcgacgc gaggatatag aactgcgcgc ccgaattcag atagtcgaga aaatcggcag
     1741 tgtcacgacg gccgggtaca tcgctcattc cgctcaggat catatcgaca cggcccgttg
     1801 ccagcgacgg caacagctgc tcgaacgccg actcctgcca gtccattttt acgccgagtt
     1861 ccttggcaat cgcattgccc agatcgatat cgaagccgac caggtcgccg ctttccggat
     1921 ccttgtattc catcggcgga tagatggaat tcaccgcgac cttgatcact ttcgacttcg
     1981 cgatagcatc aggcaaggcc tgcgcatgcg cgccgctcgc gaagagaaac gtcgacaggc
     2041 aaagtgccat caggctggaa acggcacgga tcgggttcag cttgttcatg gaagacacac
     2101 ctttatatag gtcttgttgc aggtcgaggt cgggttggga tagcgattaa cgcactacgg
     2161 gtcgggtgtc ggcgtcgcct cgcagccatt gcgccagcgt tcgtgcatcg gcgaggttgt
     2221 ccagatcgag cacggcggtt tcaagcgcat tcactgacgc ttgcgggatc gtcatggcgg
     2281 ccagcacgcg gtatttatcg gcgaggtccg catccgatac tggattgcgc gggtcgccga
     2341 gcggcacttt gatttgctgc gaacgcggtt cggcatcgga cagtgcgagc gtgatgacgg
     2401 gctcgtcgag gtcggacatc gacggatcaa tttcgagtgt gacgcgttcc attgcggctg
     2461 caatgcgcgg gtcgtgacgc tgcgcgtcaa gataggcgcc gattcctgca tggccgttca
     2521 ccagcaccgt ggcgatcgcg taaggcaaac tcatctgcgc ggaagcgagt gtgcggatgt
     2581 cacggccgcc gcacatctgg ttcacgaagg cgctgaggcg gacgtgtacg ccaacgagct
     2641 tgtccaggtc ggccgcgcgt ccgtgcagca gttcgagcgt ggcatctacg gccgcgtgcg
     2701 tgctgcggca cgccgcgtgc ggcttgatcg agcagcgcat gagcttccag acaacaccca
     2761 ggtccgccag cagcgcatct ggcgtttgcg tgtctcgtgc aaaggcattg aagaaaccac
     2821 cccacacgtc ttcgaacacc tgcgtcgggc cactaacgcc ctgctgggcg agcagcgctg
     2881 cgagcaagcc gccttcagcc gcgcgacccg tatgcatgcg cttggtctgc gaggcgtcgt
     2941 ggataaatcc ccataaccc
//
LOCUS       DATGBK010001264         2322 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_176990, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001264 DATGBK010000000
VERSION     DATGBK010001264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176990"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1021)
                     /locus_tag="VKJ77_17700"
     CDS             complement(<1..1021)
                     /locus_tag="VKJ77_17700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008447323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC47156.1"
                     /translation="MLTPSRAAMAPSAPARVRPGDPGWPSDAQWNELGQQVGDALVKV
                     QSPFATCLNSPDSADCQQLFKELKNPYFLGDEVGLTQSLGWVDAWTSTPSVYAVAARN
                     TNDVVAAINFACRNNLRLVVKGGGHSYQGTSNAPDSLLVWTRKMNDITLRDAFVGTGC
                     EGHASPVRAVTVGAGALWAHVYDAVTTQAGGYVQGGGCMTVGVAGLIQSGGFGSFSKA
                     YGLAAGSLLEAEVVTADGAVRIANACTNPDLFWGLKGGGGGSLGVVTRLTLRVHELPE
                     TFGAVNMTIKATSAAAFRRLIGLMVDFYHQDLMNPHWGEQIRFRPNNVLNISMVFQGL
                     SRSEAQ"
     gene            complement(1167..>2322)
                     /locus_tag="VKJ77_17705"
     CDS             complement(1167..>2322)
                     /locus_tag="VKJ77_17705"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HMC47157.1"
                     /translation="PPELFATFVATCARTPRHFNILTERLAELLSVRLDEESMGGGKS
                     VSRMTLRQVLMTGLEQHIHFDKTFTRYEQHANGSVTAFFDDGTQATADLLVGADGARS
                     KVRRQLLPEARLENTGIVSIAAKVPMSEASRALLPPKVLDGITLINAPKGFGAIVHVM
                     EFPWGADGLKEGPGGGDAELLTRWPGLLFDNTRDYLMWGVWGALRNLPANPKSLSQPA
                     LLALATEITDGWHPNLRALIRASDPDTAFAVDVRTSVPVDAWPTTNVTVLGDAVHLMT
                     PGRGVGANTALRDAALLAARLGAAQRGDMSGHDAIAGYEAQMREYGFHAVAESRKQFD
                     ASGAIHRPMVGRVALGAMRTGLRVVNNVPLLKRRMIDTENDFRGVEGTQP"
BASE COUNT          409 a          753 c          722 g          438 t
ORIGIN      
        1 cttgcgcttc gctgcggctg aggccctgga acaccatcga gatattgagg acgttgttag
       61 gacgaaacct gatctgttcg ccccagtgcg ggttcatcag gtcctgatga taaaagtcca
      121 ccatcaagcc aatcaaccgg cgaaatgccg ccgccgacgt ggccttgatc gtcatgttca
      181 ccgcgccgaa ggtctcgggt aactcgtgga cccgaagcgt cagccgtgtg accacgccca
      241 ggctaccacc gccgccgcct ttcagccccc agaacaagtc gggattcgtg caggcattgg
      301 cgatcctgac ggcgccgtcc gccgtcacga cttcggcttc gagcaggctt cctgccgcca
      361 gtccgtaggc tttggaaaag cttccgaacc cgccgctctg gatcaggccg gccacgccga
      421 ccgtcatgca gccgccaccc tggacgtaac cgccggcctg cgtggtgacc gcatcgtaga
      481 cgtgtgccca gagcgcgccg gcgccgaccg tgactgcccg caccggcgag gcgtgcccct
      541 cgcatcccgt accgacaaac gcgtctcgca gggtgatgtc gttcattttt cgcgtccaga
      601 ccagcaggga gtccggcgca ttggacgtgc cttgataact gtggccgcca cccttcacga
      661 caagccgcaa attatttcgg catgcgaagt tgatggcagc aactacatca ttcgtattgc
      721 gcgcggccac cgcatagacg ctgggtgtcg atgtccacgc gtcgacccaa ccgagggatt
      781 gcgtcaggcc gacttcatcg ccgagaaaat aggggttctt gagttccttg aacaactgct
      841 ggcagtcggc gctatcgggc gagttcaggc aagtcgcaaa gggcgattgc actttgacca
      901 atgcatcgcc gacttgctgg ccgagttcgt tccactgtgc atcggatggc cagcccgggt
      961 cgcccgggcg cactcgggct ggcgcactgg gcgccatggc cgcacgcgac ggcgtgagca
     1021 tcggtttcca tatgcctgac aaaaacggaa gtccggctgc gaattgcaaa agacgtcgtc
     1081 ttttccggga gagcgtttgg ttcgaaggtt tcatcggtta gcgtgaaatc ttgaagtggt
     1141 cgcaaccgtg aagttaaccc cgttagctac ggttgtgtac cctctacacc acgaaaatcg
     1201 ttttccgtgt cgatcatgcg gcgcttgagc agcggcacgt tgttcaccac gcgcaaaccg
     1261 gtgcgcatcg cgccgagcgc cacgcgcccg accatcgggc gatgtatcgc accgctggcg
     1321 tcgaactgct tgcgcgactc cgctaccgcg tggaagccgt attcgcgcat ttgcgcctcg
     1381 taaccggcga tcgcgtcgtg gcccgacatg tcgccgcgct gagccgcgcc caagcgggct
     1441 gccagcagcg cggcgtcgcg cagcgcggtg ttggcgccca cgcctcggcc cggcgtcatc
     1501 aggtgcactg cgtcgcccag gacggtcacg ttggtggtcg gccacgcgtc gacgggcact
     1561 gacgtgcgga catcgacggc aaaggcggta tccggatctg acgcgcgaat cagcgcgcgc
     1621 aggttcggat gccagccgtc ggtgatctcg gtcgccagcg cgagcagcgc gggttggctg
     1681 agcgatttgg gattggctgg caggttacgc aacgcgcccc atacgcccca catcagatag
     1741 tcgcgggtgt tgtcgaacag caggcctggc cagcgcgtga gcaattcggc atcgccgccg
     1801 ccggggccct ccttgagacc gtccgcgccc cacgggaact ccatgacatg cacgatggcg
     1861 ccaaagccct tcggcgcgtt gatcaacgtg atgccatcca gcactttcgg cggcagcagc
     1921 gcgcgcgatg cttcgctcat tggtaccttg gccgcgatgc tgacaatacc ggtgttctcc
     1981 agccgcgcct cgggcagaag ttgccggcgc actttggagc gcgcgccatc cgccccgacc
     2041 agcaggtccg ccgtggcttg cgtgccgtcg tcgaagaatg cggtcacgct gccattggcg
     2101 tgctgctcgt accgggtaaa cgttttgtcg aagtgaatgt gctgttccag tccggtcatc
     2161 agcacttgcc gtagcgtcat ccggctcacg gacttgccgc cgcccatgga ctcctcgtcg
     2221 agcctgactg ataacaactc ggctaaccgc tccgtcagga tgttgaagtg gcggggtgta
     2281 cgcgcgcagg ttgcaacgaa agtcgcgaac agctcgggcg gc
//
LOCUS       DATGBK010001265         1677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_107761, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001265 DATGBK010000000
VERSION     DATGBK010001265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107761"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..1193
                     /gene="bioB"
                     /locus_tag="VKJ77_17710"
     CDS             159..1193
                     /gene="bioB"
                     /locus_tag="VKJ77_17710"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020206779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HMC47158.1"
                     /translation="MSQSTPSNDRVSHTRGEPRRNWTRAEADALYNLPFADLMFEAQS
                     VHRANFDPNHVETASLLSIKTGGCPEDCGYCSQSAHYDTDVKATKLMDSKVVIETARR
                     ARDAGASRFCMAAAWRNPKDKDLDRVCEMVSAVKDLGLETCATLGMLTPQQAERLHDA
                     GLDFYNHNVDTSPEFYGNIITTRTLQDRIDTLAHAREAGLKVCCGGIIGMGEQVEDRL
                     GMLMLLANMPAHPESVPINMWNEVKGVPVNKTADRPDPIALVRMIAVARIMMPKSVVR
                     LSAGRQYMTDELQALCFVAGANSIFIGDVLLTTKNPQTDRDTDLLHRLGIKSQLDAAR
                     TLAQSVQAAE"
     gene            1338..>1677
                     /locus_tag="VKJ77_17715"
     CDS             1338..>1677
                     /locus_tag="VKJ77_17715"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC47159.1"
                     /translation="MHSKPEAPLSLAESLRYPWETPPGPGDVIEVTPGVLWVRLKLPF
                     QLNHVNIYLLADGDGWAMVDSGFGNEETIEAWTALFEGPLAHVKITRLIVTHSHPDHV
                     GLAGWIVERFN"
BASE COUNT          338 a          540 c          506 g          293 t
ORIGIN      
        1 atattcgcgc ggcctaaatc gcgcgagccg gaattacttc ctgattgcga cgattgacag
       61 cgccaaggac ccgtggtcct tggagctatc cgccagcgcg cgaccctgat ccagtagagg
      121 accggttttc gcgggcttgc aatgcgagga agtccgccat gagccaatcg acgccttcga
      181 acgacagagt ttcccatacg cgtggcgagc cgcgtcgcaa ctggacgcgg gcggaagccg
      241 acgcgctgta caacctgccg tttgcggacc tgatgttcga ggcccagagc gtgcaccgtg
      301 cgaacttcga ccccaatcac gtcgaaaccg cgagcctgct gagcatcaag actggcggct
      361 gcccggaaga ttgcggctac tgctcgcaga gcgcgcacta cgataccgac gtcaaggcga
      421 ccaagctgat ggacagcaag gtcgtgatcg aaaccgcgcg acgcgcccgc gacgccggtg
      481 ccagccgctt ctgcatggcc gctgcctggc gcaatcccaa ggacaaggat ctcgaccggg
      541 tgtgcgagat ggtcagcgcc gtcaaggatc tcggcctcga gacctgcgcc acgctcggca
      601 tgctgacgcc gcagcaggcg gagcgcctgc acgacgccgg cctcgatttc tacaaccaca
      661 acgtcgacac ctcgccggaa ttctacggca acatcatcac cacgcgcacc ttgcaggatc
      721 gtatcgacac gctagcgcat gcccgcgaag ccggactgaa agtctgctgc ggcgggatca
      781 tcggcatggg cgaacaggtc gaggatcgtc tcggcatgct gatgctgctc gccaacatgc
      841 cggcccatcc cgagagcgtt ccgatcaaca tgtggaacga ggtcaagggc gttccggtca
      901 acaagaccgc cgaccggccc gacccgatcg cgctggtgcg gatgattgcg gtcgcacgca
      961 tcatgatgcc gaagagcgtc gtacggttgt cggcgggccg gcaatacatg accgacgaat
     1021 tgcaggcctt gtgtttcgtc gccggcgcca attcgatctt catcggcgac gtgctgctga
     1081 ccaccaagaa cccgcagacg gatcgcgata ccgatctact gcaccgtctc ggcatcaagt
     1141 cgcagctcga cgcggcccgg actctggcgc agagcgtgca agctgcggaa taaccgcatt
     1201 tgcaacacga caacgccgtc gcgtccgcgc ggcggccggc ggctttgcat gaattcgcgg
     1261 gtctgcaaac cggtttttcg gctggcgcct ccggaattgt ttcgctaagc cgaatgaagc
     1321 aatcacggcg atgaaacatg cattccaaac ctgaagctcc actcagtctg gccgaatccc
     1381 tgcgttatcc gtgggaaacg ccacccggtc ccggcgacgt catcgaggtg acgcccggcg
     1441 tattgtgggt gcgattgaag ctgccgttcc agctcaacca cgtgaacatc tacctgctcg
     1501 ccgacggcga cggctgggcg atggtcgatt ccggtttcgg caatgaggaa accatcgaag
     1561 cctggacggc gctgttcgaa ggcccgcttg ctcacgtcaa gatcacgcgc ctgatcgtca
     1621 cgcattcgca tcccgatcac gtcgggctcg caggctggat cgtcgagcga ttcaatt
//
LOCUS       DATGBK010001266         3315 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_61860, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001266 DATGBK010000000
VERSION     DATGBK010001266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3315
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61860"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VKJ77_17720"
     CDS             <1..220
                     /locus_tag="VKJ77_17720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HMC47160.1"
                     /translation="KPPRTVILVHVESVYFHCSKAVVRSDLWNGEKYVDRSSLPSAGA
                     MLQNVSDASFDGSAYDRALPGRLKTDLY"
     gene            complement(217..1329)
                     /locus_tag="VKJ77_17725"
     CDS             complement(217..1329)
                     /locus_tag="VKJ77_17725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007880494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HMC47161.1"
                     /translation="MKAWMLDEPGTPLALRDVAQPAPRRNAVVVRMEAVPLLSYTRAH
                     VEGKLPYAYPPGPFSPGTNGVGRVEAVGEGVVSFHVGQRVAVNPYWIANETVREPAQV
                     LIALTGLGGDSGPMLAEFPHGTLREVAEFPASTLIPLDGLDDLPAERLAILGKFAVPF
                     GGLRRGRLAAGETVIVNGATGYFGSAAVLAALAMGASRVVALGRRAQPLQPLVELGRG
                     RVVPIVLSGDAAHDVTAIRAAAGAGADLAFDMVGNATDANATLATLRSLRRAGRLVLM
                     GSMLVDLPIPYSEMLLNNWELIGHFMYTPADYLALVALAASRQLPLASVELKTFPFAA
                     LEAAIDEAGRMSGLQCTVICGDSPQAWAEKEGDDAV"
     gene            1420..2331
                     /locus_tag="VKJ77_17730"
     CDS             1420..2331
                     /locus_tag="VKJ77_17730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014007272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47162.1"
                     /translation="MIDLRGIDLNLLVSLDALLAESNVTRAALRLHLTQPAVSTQLAR
                     LRQIFGDPLLIPAETGRGMTRSTRALELMEPLHLALKNLEAVVRHQPSFDPHTDHHSF
                     VIAANDNATAVLGQRLMEQLSTLAGPGVRIAFVVADQPSMATRLERGEIDLLLGSERM
                     VPASMKARKLFDEHFVVVQRKGHPRGTAPLDLDTYCALNHVLVSTSGGSFHGFMDEHL
                     EALGRERRVVLSVQHFTLVPELLARTDYVSTLPARFAERYRERLDIFDLPFEARGFTL
                     FAAWPPRSQGDPAHVWLRDTLAALASM"
     gene            2431..>3315
                     /locus_tag="VKJ77_17735"
     CDS             2431..>3315
                     /locus_tag="VKJ77_17735"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HMC47163.1"
                     /translation="MVEPTEIPRFDAETNFKLDRLWSEFEDASVEKEFQRHHRIANHT
                     SLMRTLVFCTLFYVTFAITDIAALGYSRTTFVLLLARCCVALTGVISLRVVSFPQVSL
                     ASVRAAASAFEVVGFTVFMLITWLRPTGMAAHCMSMCILLIVVYNFIQNKLLWALLIS
                     LAATIAFIAICAVSKTLDSSSLLTSSMLLAFTNVLGYVTARRHNRLVRDEFCQHALLR
                     NLSVRDYLTGCFNRRYLTDVLFDAELQRTRRYKLKLAVILCDIDYFKQINDTYGHPAG
                     DAVLRTFAAMLLAHTRHRV"
BASE COUNT          603 a         1068 c          962 g          682 t
ORIGIN      
        1 caaaccgccg cgcacggtga tcctcgtgca tgtggagtcc gtgtatttcc attgttcgaa
       61 ggcggtcgtg agatcggact tgtggaacgg cgagaaatac gtcgaccgct cgagcttgcc
      121 ctcggccggc gccatgctgc agaacgtaag cgatgccagt ttcgatggca gcgcctacga
      181 tcgtgcactg cccggacgtc tcaagaccga tctgtactaa acggcgtcat ccccctcttt
      241 ctcagcccac gcttgcggcg agtcaccgca gatcaccgtg cattgcaggc ccgacatgcg
      301 gccggcttca tcaatagccg cttccagtgc cgcgaatgga aacgtcttca gttcgacgga
      361 tgcgagcggc aactggcgcg atgcggccag cgcaaccagc gcgagataat cggcgggcgt
      421 gtacatgaag tggccgatca actcccagtt gttcagcagc atctcggaat agggaatcgg
      481 caagtccacc agcatgctgc ccatcagcac gaggcgcccg gcgcggcgca ggcttcttaa
      541 cgtagcgagc gtggcgttgg catcggttgc attgccgacc atatcgaaag ccaggtctgc
      601 gccggcaccc gccgccgcac gaatggccgt tacatcgtgc gccgcgtcgc ccgaaagcac
      661 gatcggcacc acgcggcctc gcccgagttc caccagcggt tgcagcggtt gcgcacgcct
      721 gccgagcgca accaccctgc tcgcgcccat cgccagtgcg gcgagtaccg cggccgagcc
      781 gaagtagccg gtcgcaccgt tcacgatcac ggtttcaccc gccgcaagcc ttccgcgccg
      841 taacccgccg aacggcaccg cgaacttgcc caggattgcg aggcgctcgg ccgggagatc
      901 gtcgagccca tcgagcggaa tcagcgtcga cgccgggaac tccgccactt cgcgaagggt
      961 gccatgcgga aattcggcaa gcatcggccc gctgtctccg ccaagaccgg tcagcgcgat
     1021 caggacttgt gccggttcgc gaaccgtttc gttcgcaatc cagtacgggt tcaccgcgac
     1081 gcgctgaccc acgtgaaacg acaccacgcc ctcaccgacc gcttccacgc ggccaacgcc
     1141 atttgtcccc ggcgaaaacg gtcccggcgg atacgcatac ggcaacttgc cttcaacgtg
     1201 agcgcgcgtg tagctgagca gcggcaccgc ttccatccgg acgaccaccg cgttgcggcg
     1261 cggcgccggt tgtgcaacgt cgcgcagcgc cagcggcgta ccgggttcat cgagcatcca
     1321 ggctttcatc tgtattcccc ttaaggtcgg ttggacagtt gaactctagg tgccgggtac
     1381 gtattcttga aatcaattaa tggaatgcga cctatcaaca tgattgatct tcgcggtatc
     1441 gacttgaatc tgcttgtgtc gctggatgcg ttgctggccg aatcgaatgt cacgcgcgca
     1501 gcgcttcggt tgcatctgac gcagccggct gtctcaaccc agcttgcgcg gctgcggcag
     1561 atcttcggcg atccactgct gattcccgcc gagaccggcc ggggcatgac acgcagcacg
     1621 cgggcgcttg aattgatgga gccgctgcac ctggcattga agaatctcga agcggtcgtg
     1681 cgccatcaac cctccttcga tccgcatacg gaccatcaca gctttgtgat tgccgcgaac
     1741 gataacgcca cggcggtgct cggccagcga ttgatggagc agctttcgac actggccggg
     1801 ccgggcgtgc ggatcgcgtt tgtcgttgcc gaccagccgt cgatggcgac ccggcttgag
     1861 cgcggcgaaa tcgatttgct gctgggttcg gagcggatgg tgccggcgtc gatgaaagct
     1921 cgcaaactct tcgatgagca ttttgtcgtt gtccagcgca aggggcatcc acgcggtacg
     1981 gccccgctcg atctcgatac atattgcgcg ttgaaccacg tgctggtgtc cacgagcggg
     2041 ggcagttttc atggcttcat ggacgaacac ctggaggcgc tgggacgcga gcgccgggtt
     2101 gtattgtcgg tgcagcattt cacgctcgtg cctgaattgc tggcacgcac ggactatgtt
     2161 tcgacgctgc ccgcccgctt tgccgagcgt tatcgggaac gcctcgatat cttcgatcta
     2221 ccgttcgagg cgcgcggttt tacgctgttc gccgcgtggc cgcctcgcag tcaaggtgat
     2281 ccggcgcacg tgtggttgcg tgacacgcta gcggcactag cctcgatgta aggtcgacat
     2341 tgcattttcg tcaggacgtc ggcgggccag gccccacaca caaaatgact tatcatgttg
     2401 ccccaaccgc gacatcggac atggcgagcg atggtagaac caaccgaaat tccacgcttc
     2461 gacgcagaga cgaatttcaa acttgaccgt ctatggtccg agttcgaaga cgcgtcagtg
     2521 gaaaaagagt ttcagcgcca tcaccggata gcaaaccata cctcgctgat gcgcacgctc
     2581 gtcttctgca ccctgtttta cgtcacgttc gcgattaccg acatagccgc cctcggttat
     2641 tcccgtacca ccttcgtgct tttgctggcg cgctgctgcg ttgcattgac gggtgtgatc
     2701 agcctgcgcg tcgtaagctt cccgcaggtt tccctcgcct ccgtgcgcgc ggccgcgagc
     2761 gcgttcgaag tggtcggctt cactgtcttc atgttgatca cctggcttcg tcccaccgga
     2821 atggcggcgc actgcatgtc catgtgcatt ctgctgatcg tggtgtacaa cttcattcag
     2881 aacaagctgc tctgggcttt gctcatatcg ctggccgcga ccatcgcgtt tatcgctatt
     2941 tgcgcggtat cgaagacgct cgattcgtcg tcgttgctga cctcgtccat gctgctggcc
     3001 ttcaccaacg tgctcggtta tgtcaccgct cgccgccaca atcgcctggt ccgcgatgaa
     3061 ttttgccagc acgccctgtt gcgcaacctc tctgttcgcg actatctcac cggctgcttc
     3121 aaccggcgat atctgaccga cgtgctgttc gacgccgaac tccagcgcac tcgccgatac
     3181 aagctcaagc tcgctgtcat cctgtgcgac atcgactact tcaagcagat caacgatacc
     3241 tacgggcacc ccgcaggcga cgcagtcttg cggactttcg ctgccatgct gcttgcgcac
     3301 acacggcacc gggtc
//
LOCUS       DATGBK010001267         1666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_223795, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001267 DATGBK010000000
VERSION     DATGBK010001267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223795"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..483)
                     /locus_tag="VKJ77_17740"
     CDS             complement(<1..483)
                     /locus_tag="VKJ77_17740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47164.1"
                     /translation="MITMLLPLIFALAGDPTPAPDTAPPTPLREIGRVRSLSACATIV
                     VHANSAIDDALSNDQDLAVAVNHLRTTDIDGANAAERRKRLADLMSFAVRIRTSSSAG
                     DAEVRRLRDMAAAEKDPDRKAELKAFADALGGALHRQKLAADDLAKAVTNMDGRQAAN
                     H"
     gene            606..983
                     /locus_tag="VKJ77_17745"
     CDS             606..983
                     /locus_tag="VKJ77_17745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47165.1"
                     /translation="MRVNTIQKGTTAVAGAHQLVIVRDARTMAQFAIKAPVNFTKEFG
                     VLLLMGPHRETGWEQVIESIRPNTDRVRIVAFERQNLAGGEPAPEYRTYTLWIVPNSV
                     YRRGSRVDAVTPSGELITSITLK"
     gene            1148..>1666
                     /locus_tag="VKJ77_17750"
     CDS             1148..>1666
                     /locus_tag="VKJ77_17750"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47166.1"
                     /translation="MTTEFIEQFDATITRLGVVMAPDGSPGEIEGVLNPACVRDRKGL
                     LLLYPRAVGAGNVSRIGLACDRGHGDVVDFKRLGYALEPQAEYELRPENNGGMGCEDP
                     RVTFVPVLNRFVMVYTAFGPRGPRITIALSDDGYTWERLGLVDFTAPDLPHGDDKDGM
                     FFPEPVRSPSGVL"
BASE COUNT          303 a          473 c          538 g          352 t
ORIGIN      
        1 atgattggcg gcttggcgtc cgtccatatt ggtgacggct tttgccaggt cgtcggctgc
       61 cagcttctgg cggtggagcg cgccgccaag cgcgtcggcg aatgctttga gttcagcctt
      121 gcgatcgggg tctttttcgg ccgcagccat atcgcgcagg cgcctgacct cggcgtctcc
      181 cgccgatgat gacgtgcgaa tgcgcaccgc aaacgacatg agatcggcca gacgcttgcg
      241 ccgctcggct gcattggcgc cgtcgatatc cgtcgttcgc aaatggttca cagcaaccgc
      301 gagatcctga tcgttgctga gagcgtcatc gatcgcacta ttggcatgga cgacgatcgt
      361 ggcgcaggcg ctcagcgacc gaacgcgacc gatttcgcga agcggcgtcg gcggtgcggt
      421 gtcgggggcc ggtgtcgggt cccccgccaa ggcaaaaata agtgggagca acatggtgat
      481 catgatgtcc cgtccgactt ccgtcgcagg tgcggggtat cctcgcaccc ggccgtcgaa
      541 acggcctgta gatgcgcgtt tttctggctg tagttttcat atttgcgctt acgggttgtc
      601 gagaagtgcg cgtcaacacg atacaaaagg gcacgaccgc cgtcgccggc gcacaccagc
      661 ttgtcatcgt gcgtgacgcc cggactatgg cgcagtttgc gatcaaggcg cccgtcaatt
      721 tcaccaaaga atttggcgtc ttgctgctga tggggccgca tcgggaaacc ggctgggagc
      781 aagtgattga aagcattcgg cccaacaccg accgcgtgcg catcgtcgcg ttcgagcgtc
      841 agaacctggc tggtggcgaa ccggcgccgg aatatcgcac gtacacgtta tggattgtgc
      901 cgaactccgt ctaccggcga ggctcccgcg ttgacgcggt aactccgtcc ggcgagctga
      961 ttacatcgat cacgctgaag tagaggccgc ctggctggtt ctgctaagaa agcgtgaggc
     1021 ggacgaaccg cggagcgatg gcattcgttg tattgacgta ttcctcaatt gctagccgat
     1081 gcggtcgata ctgttctcgg atgggtatgc acgagctacg tggactggta ggattgactc
     1141 aacgacgatg acgaccgaat tcatcgaaca gttcgatgcg acaatcacgc gcctgggggt
     1201 cgtgatggca ccggacggca gcccgggcga gatcgagggg gtcctcaatc cggcgtgcgt
     1261 gcgcgaccgc aaggggttgc ttttgctgta cccgcgcgcg gtcggcgcgg gcaacgtttc
     1321 gcggattgga cttgcatgcg atcggggcca cggcgatgtc gtcgatttca agcgtttggg
     1381 atatgcgctc gaaccgcagg ccgagtatga actccgccct gaaaacaatg gcggcatggg
     1441 ttgcgaagat ccgcgcgtta cgttcgtacc ggtactcaat cgtttcgtga tggtctacac
     1501 ggcgttcggg ccgcgtggcc cgcgcattac gatcgcgctt tccgatgacg gttacacatg
     1561 ggaacgttta gggctcgttg atttcaccgc ccccgattta ccgcacggcg atgataaaga
     1621 cggcatgttc tttcccgaac ccgtccgatc gccgagcggt gtgttg
//
LOCUS       DATGBK010001268         2156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_293135, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001268 DATGBK010000000
VERSION     DATGBK010001268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293135"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..509
                     /locus_tag="VKJ77_17755"
     CDS             <1..509
                     /locus_tag="VKJ77_17755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HMC47167.1"
                     /translation="DPRDRTRMAVVESASGKYARTHYRTIDRAMWNNQPVSAVHCDLD
                     TGRTHQIRVHCAHIRHPLLGDPIYGHARGKRSVQPLPDGFNRQALHAWRLGLIHPTTG
                     REISWRADVPEDIEALAAELGLGRDEATDLDPEDADFIDEDDDNVQARGGWDESQPIE
                     YDEDDDEE"
     gene            644..1408
                     /gene="pgeF"
                     /locus_tag="VKJ77_17760"
     CDS             644..1408
                     /gene="pgeF"
                     /locus_tag="VKJ77_17760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006026944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HMC47168.1"
                     /translation="MKAFATTRNGGVSAAPYGGANGRGGLNLGLHTGDVPEAVMENRR
                     RVVELTGAPVAWLEQVHGAQIEDAGEVIDRCAGSPSSVVKADAAVTDRAGVVCVVMIA
                     DCLPVLFCDAAGRAVGAAHAGWRGLAAGIVEKTAERVAHLAGAQASTLHAWLGPAIGP
                     AAFEVGEDVLDAFIAAADPACRDATIAAFARREDKHKYLANLYALARLRLKGAGVPPQ
                     NVHGGTFCTMTDAERFYSYRRDRTTGRMAAMIWLAD"
     gene            1931..>2156
                     /locus_tag="VKJ77_17765"
     CDS             1931..>2156
                     /locus_tag="VKJ77_17765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47169.1"
                     /translation="MQKMFEQWLNTWRAVADPAQWQKLAAQANPGHTESAGSSSVNPF
                     AALGGFPSFPGFPGFPGMNVMNGISGGNSGG"
BASE COUNT          414 a          650 c          696 g          396 t
ORIGIN      
        1 gcgatccgcg cgaccgcacg cgcatggcgg tggtggagag cgcatcgggg aaatacgccc
       61 gcacgcacta ccgcaccatc gaccgcgcga tgtggaacaa ccagcccgtg tccgcggttc
      121 actgcgatct cgataccggc cgcacacacc agatccgcgt gcattgcgcg catatccgcc
      181 atccgttgct gggggacccc atctacggcc acgcgcgtgg caagcgttcg gtgcagccgc
      241 tgccggatgg gttcaatcgc caggcgctgc atgcctggcg gctcgggctg atccatccga
      301 ccacgggtcg cgagatcagc tggcgcgcgg acgtgccgga ggatattgaa gcgttggcgg
      361 cagaattggg cctgggtcgc gacgaagcga cggatctcga tcccgaggac gcggatttca
      421 tcgatgaaga cgatgacaac gttcaggcgc gtggcggctg ggacgagtcg cagccaatcg
      481 aatatgacga agatgatgac gaggaatgac gccaatggtg acgccatccg aggcaggctt
      541 cgcggctgac ctcgccacta gatttgcagt ttacccgtcg cttcgcaacg acgattgcct
      601 ttggcccggc tggtcgagcg gtcccaatgc ggtttctaca cgcgtgaagg cattcgcgac
      661 tacgcgcaat gggggtgtca gcgccgcccc gtatggcggt gcgaacggcc gtggcggcct
      721 caacctcggc ctgcatacag gcgatgtacc cgaagcggtg atggaaaacc gccgccgcgt
      781 ggtggaactc actggggccc cggttgcgtg gcttgagcaa gtgcacggcg cacagatcga
      841 ggatgcaggt gaggtgatcg accgctgcgc tggttctccc tcgtcggtgg tcaaggccga
      901 cgcagcggtg accgaccgcg cgggagtcgt atgcgttgtg atgatcgcgg actgcctgcc
      961 ggtacttttc tgcgatgcag ccggccgtgc cgtcggcgca gcgcatgcag gctggcgcgg
     1021 gctcgcggct ggaatagtgg aaaagacggc ggagcgggtc gcgcatctcg ccggcgccca
     1081 ggcaagcacg ttgcacgcat ggctcggtcc ggcgattggt ccggcagcgt ttgaggtagg
     1141 tgaggatgtg ctcgacgcgt tcatcgctgc ggccgatcct gcctgtcgcg atgcgaccat
     1201 tgccgctttc gccaggcgtg aagataaaca caaatatctc gccaatctct atgcgctcgc
     1261 ccgtttgcgc ctcaaggggg ctggcgtacc gccccagaac gtccacggcg ggacgttttg
     1321 cacgatgact gacgcggagc ggttctattc gtatcgacgg gaccggacaa cggggcgcat
     1381 ggccgcgatg atctggctgg cagactagac ctcccggccc cgatcaacgc aaatccggct
     1441 caaaccgcat atgacccgat gttcgcgcat accgtagtgc acggtttttg ctgcgcaact
     1501 aagacgtggc tggccgcgac gggcgtggtt tatgttgcgc aacaattctt gacagtcatc
     1561 atcgcgtcac atcgggaaaa cgatgatgac taaaatatcg cactgcgtca aaatcaaggc
     1621 gacgcattga cacgccttgc accgtggagc aagaatgttt cacaaaagcg cacggcgtag
     1681 caaggtcaca tcatcgcggt cgggcgttta gcagcccggc acgacgttca cgacgacgcg
     1741 gctccacgtc acgcctgcat cagcaactca gtctctcggg acgcttaggt caaacgcgga
     1801 tatggctgcc tccagatctt catcttcatc atcaccgggt tcatcaaggc catccgctgc
     1861 caaggcaaca cctgacgcac cgggtgcgcc gggtgcgcct cttggcatgc ccgccacaga
     1921 tccagcggca gtgcaaaaga tgttcgagca atggctcaac acatggcgtg cggtagccga
     1981 cccggcccag tggcaaaagc ttgccgccca ggcgaatccg ggacatacgg aatccgcagg
     2041 atcgtcatcg gttaatccgt ttgcggcgct gggtggtttc ccgagttttc cagggtttcc
     2101 tggttttccg ggcatgaatg tcatgaatgg cattagcggc ggtaacagcg gcggcg
//
LOCUS       DATGBK010001269         2277 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_130725, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001269 DATGBK010000000
VERSION     DATGBK010001269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2277
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130725"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..1046
                     /locus_tag="VKJ77_17770"
     CDS             81..1046
                     /locus_tag="VKJ77_17770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HMC47170.1"
                     /translation="MTRKANPARRRVLAATAVFAAFSLLPVSSAFAQTAKKPVVALVM
                     KSLANEFFLTMETGAKDYQAHNASKFTLISNGIKDETDTANQIRIVEQMIVSKVDALV
                     IAPADSKALVPVIKKAVDAGIIVVNIDNQLDPEVLKSKDLNVPFVGPDNAKGAKLVGD
                     YLVKKLKSGDEVGIIEGVSTTTNAQQRTAGFKEAMQAGGMKVVALQSGDWEIDKGNAV
                     ASQILNANPNIKALLCGNDNMALGAVAAVRAAGKAGKVQVVGYDNINAIKPMLADGRV
                     LATADQYAAKQAVFGIDTALKALSAHQKQSQLSSVVETPVNLVTK"
     gene            1259..>2277
                     /locus_tag="VKJ77_17775"
     CDS             1259..>2277
                     /locus_tag="VKJ77_17775"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC47171.1"
                     /translation="MPSPIVPSADIAPVLTIHGIGKTYVEPVLADVSLHLLPGEVLAL
                     TGENGAGKSTLSKIVGGLVTPTTGSMQLGGVSYAPASRSDAEAHGVRMVMQELNLLPT
                     LSVAENLFLNRLPKRGLGWIDRTTLRENARQAMAQVGLDAIDPDTLVGELGIGHQQMV
                     EIARNLIGDCRVLILDEPTAMLTAREVDLLFEQGDRLKSRGVALVYISHRLEELARIA
                     ERAAVLRDGRLVHIDAMRNLTSDKLVTLMVGRDIGERIDLGERRIGATAFKVQGMTRG
                     HAVRDVSFEVKAGEIFGISGLIGAGRTELMRLIYGADRADSGSISIAHRGAALKTVSI
                     KSPSDA"
BASE COUNT          495 a          700 c          692 g          390 t
ORIGIN      
        1 cgaccaatcg actaactgcc tgaacgattc gacggctatc cctcagtaga ccgaagagcg
       61 aactaactaa cggagactct atgacccgca aagccaaccc agcacggcgc cgcgtactcg
      121 ctgcaaccgc agtatttgcc gcattttcac tcctgccggt ttcgtcggca ttcgctcaaa
      181 cggctaaaaa acccgtggtc gccctcgtga tgaagtcact cgccaacgag ttcttcctca
      241 ccatggaaac cggcgccaag gactatcagg cgcataacgc gagcaagttc acgctcatct
      301 cgaacggtat caaggacgaa accgataccg cgaaccagat ccgcattgtc gagcagatga
      361 tcgtctcgaa ggtcgatgcg ctcgtgatcg ctcccgctga ttccaaagcg ctcgttccgg
      421 tcatcaagaa ggccgtggat gcagggatca tcgtggtgaa catcgacaac cagcttgatc
      481 cggaagtcct caagtcgaag gatctgaacg tgccgttcgt cggcccggac aacgcgaaag
      541 gcgcgaagct ggtaggcgac tacctggtca agaaactgaa atccggcgat gaagtcggca
      601 ttatcgaagg cgtgtcgacc acgaccaacg cgcagcaacg cacggcgggc ttcaaggaag
      661 cgatgcaggc aggcggcatg aaggttgttg cactgcaatc cggcgattgg gaaatcgaca
      721 agggcaacgc ggtggcatcg cagatcctga acgcgaaccc gaacatcaag gcgctgctgt
      781 gcggcaacga caacatggcg ctcggcgcgg ttgctgcagt acgggcggcc ggcaaggcgg
      841 gcaaggtgca agtggtcggc tacgacaaca tcaacgccat caagccgatg ctcgccgacg
      901 gccgggtgct tgcgactgcg gatcaatacg ccgcgaaaca agcggtattt ggtattgaca
      961 cggctttgaa ggcgctctcc gcgcaccaga aacagtcgca attgtcgagc gtggtggaaa
     1021 cgccggtcaa cctcgtcacc aagtaagcct gctggccccg ggctaaccgg catgcgtcat
     1081 cgcggctagc cacaatgcgc cacggtgacg catgtatgcg tgaatactgc aagcggcgta
     1141 gagtattcca acgcgcactc agccttggct gcaagtgttc aaacgtgtag tgcgccccgg
     1201 ctctttatgg ctggggcggc actcacattc cagtacccgc cctagcctct cataagcgat
     1261 gccaagtcca atagtccctt ccgccgacat agcgccggtg ctgaccattc acgggatcgg
     1321 caagacctac gtcgaaccgg tgctcgcgga cgtctcgctc catttgcttc ccggcgaagt
     1381 gctcgcgctg acaggcgaaa acggcgccgg caagagcacg ctctcgaaga tcgtaggcgg
     1441 tcttgtgacg cccaccaccg gttcaatgca gctcggcggt gtctcgtacg cgccggcaag
     1501 ccgcagcgac gcagaagcgc acggcgtgcg catggtgatg caggaactga acctgttgcc
     1561 cacgctgtcg gtcgctgaaa acctctttct gaatcgcctg ccaaaacgcg ggctgggctg
     1621 gatcgaccgc acgacgctgc gcgaaaacgc gcgtcaggcg atggcccagg tcgggctcga
     1681 cgctatcgac ccggatacgc tcgtggggga actcggcatc ggccatcaac agatggtgga
     1741 gatcgcgcgc aacctgatcg gcgattgccg cgtgctgatc ctcgacgaac ccaccgccat
     1801 gctcacggca cgcgaagtcg acctgctgtt cgagcaaggc gaccgcctga agtcgcgcgg
     1861 cgtggcgctg gtgtatatct cgcatcggct ggaagaactg gcgcgaatcg ccgagcgcgc
     1921 tgctgtgttg cgtgacggca ggctcgtgca catcgatgcc atgcgcaacc tcaccagcga
     1981 caagctcgtc acgctgatgg tcggacgcga tattggcgaa cgtatcgacc tcggcgaacg
     2041 ccggatcggc gcgacagcgt tcaaggtgca aggcatgacg cgcggccacg ccgtgcgcga
     2101 cgtatcgttt gaagtaaaag ctggcgagat cttcggcatc agcgggctga tcggcgcggg
     2161 ccggaccgaa ctcatgcggc tgatctacgg cgcggatcgg gcggatagcg gcagcatctc
     2221 gatcgcgcac cggggtgctg cgctcaagac cgtcagcatc aagtcgccct ccgatgc
//
LOCUS       DATGBK010001270         1669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_339070, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001270 DATGBK010000000
VERSION     DATGBK010001270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339070"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VKJ77_17780"
     CDS             complement(<1..605)
                     /locus_tag="VKJ77_17780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019700 - organic phosphonate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate 5-phosphate
                     C-P-lyase PhnJ"
                     /protein_id="HMC47172.1"
                     /translation="MNARIEESAMAEGYNFAYLDEQTKRMIRRALLKAVAVPGHQVPF
                     ASREMPLPYGWGTGGLQVTSAIIGRSDTLKVIDQGSDETTNAVNIRRFFARTAGVATT
                     TRTVEASIIQTRHRIPETPLTEAQILVYQVPMPEPLFRLEPRVTESRKLHALADYGLI
                     NVKYYEDIVQHGSIATTYDYPVLVNDRYLTSPSPIPKFDNP"
     gene            complement(602..>1669)
                     /locus_tag="VKJ77_17785"
     CDS             complement(602..>1669)
                     /locus_tag="VKJ77_17785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007749644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-phosphorus lyase complex subunit PhnI"
                     /protein_id="HMC47173.1"
                     /translation="PELSVDQIREQLGFAVARVMTEGSVYDEELAALAIKQAAGDLVE
                     AIFLLRAYRTTLPRFGYTVPLDTEAMLAERRISAAFKDIPGGQMLGGTYDYTQRLLDF
                     SLLAEGGPRTADARVASRSAPLQEAMPRVLALLDKEGLIEQEKQHPDAAEPGDLSREP
                     LMFPVARPVRLQNLARADEGFLLAVGYATQRGYANSHPFAGEIRYGEVAVELELEELG
                     FAVEIGDIDITECQMINQFAGSGDVPPTFTQGYGLAFGHSERKAMAMALVDRALRAQE
                     LGETVSSPTQDAEFVLYHSDNVEASGFVQHLKLPHYVDFQSELELLRRLRAGIEKEAQ
                     RERGAQEAHEAQPEPSEENAA"
BASE COUNT          298 a          520 c          514 g          337 t
ORIGIN      
        1 ttcgggttat cgaacttggg gataggcgac ggtgacgtga gatagcggtc gttgacgagc
       61 accgggtaat cgtaggtggt cgcaatgctg ccgtgctgca cgatgtcctc gtaatacttc
      121 acgttgatca gcccgtagtc cgccagcgca tggagcttgc gggactcggt cacccgcggt
      181 tcgagccgga acagcggctc gggcatcggc acctggtaca caaggatctg cgcttcggtc
      241 agcggcgttt ccggaatccg gtggcgggtc tgaataatgg acgcttccac cgtgcgcgtg
      301 gttgttgcga cacccgccgt gcgcgcaaag aagcggcgga tgttcacggc gttagtggtt
      361 tcgtccgagc cctggtcgat cactttcagc gtgtcgctgc gtccgatgat cgcggacgtg
      421 acctgcaggc cgcccgttcc ccagccatac ggcaagggca tttcccgcga tgcaaacggc
      481 acttgatgac ccggtacggc cacggctttc agcagcgcgc gacggatcat gcgtttggtt
      541 tgttcatcga ggtaggcgaa gttatagcct tcagccatgg cactttcttc gatacgcgca
      601 ttcatgcggc gttctcctcg ctgggctcgg gttgcgcttc atgcgcctct tgggcgccac
      661 gttcgcgttg cgcttctttt tcgatgcccg cacgcaggcg tcgaagcaac tcgagttcgg
      721 actggaagtc aacgtagtgc ggcaatttca gatgctgcac gaagcccgat gcttcgacgt
      781 tgtcgctgtg gtagagcacg aattccgcgt cttgcgtcgg cgacgaaacg gtctcgccaa
      841 gttcttgtgc gcgcagggca cggtctacca gcgccatcgc catggcctta cgctccgagt
      901 ggccaaacgc gaggccgtac ccttgcgtga acgtgggcgg cacatcgccg ctgcccgcga
      961 actggttgat catctggcac tcggtgatgt cgatatcgcc gatctccacc gcgaatccca
     1021 actcttcaag ttccagttcg acggcgactt cgccataacg aatctcgccg gcgaacggat
     1081 gcgaattcgc atagccgcgc tgcgtggcat aaccgacagc aagcaggaaa ccctcatcgg
     1141 cacgagcgag gttctgcaaa cggaccgggc gcgcgaccgg gaacatcagg ggctcacgcg
     1201 agagatcacc gggttccgct gcgtccgggt gctgcttttc ctgctcgatc aaaccttcct
     1261 tgtcgagcag cgcgagcacg cgcggcatgg cttcctgcag cggcgcagaa cggctcgcga
     1321 ccctggcatc ggccgtgcgc gggccgcctt cggcgagcaa gctgaaatcg agcaaacgct
     1381 gggtgtaatc gtacgtgccg ccgagcatct gtccgcccgg aatgtccttg aacgcagccg
     1441 aaatgcgccg ctccgccagc atggcttccg tgtcgagcgg caccgtatat ccgaagcgag
     1501 gcagcgtcgt gcgatacgcc cgcagcagga aaatagcttc cactagatct cccgctgcct
     1561 gcttgatcgc gagcgcggcc agctcttcat cgtagaccga gccttcggtc atcacccgtg
     1621 cgaccgcaaa cccaagctgc tcgcgaatct ggtcgacact gagttccgg
//
LOCUS       DATGBK010001271         2131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_14985, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001271 DATGBK010000000
VERSION     DATGBK010001271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14985"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..133
                     /locus_tag="VKJ77_17790"
     CDS             <1..133
                     /locus_tag="VKJ77_17790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HMC47174.1"
                     /translation="RVTLMSVDKKSGGRIIVKTMNELQIEGEEKPALVAETLAMLVA"
     gene            187..1893
                     /locus_tag="VKJ77_17795"
     CDS             187..1893
                     /locus_tag="VKJ77_17795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012355315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC47175.1"
                     /translation="MAANDKSKARSEEQNDLAASAAEGMLGPNPFVGLRPRDILATAQ
                     QIGTQALRQPTLLMEQEAALVRDLMAVLAGSADCAPPQGDKRFTDPAWQDNSLYRMAM
                     QGYVAWRSALTGFVERSSLDAKSKERAQFVLSLYTDAMSPTNTLLGNPAALKKVIDSG
                     GASLLGGMKNLVTDMLQNQGMPAQVDKTAFKVGDNLATSPGSVVFRNDVLELIQYTPA
                     TEQVYARPQLIVPPQINKFYIFDLSDGKSIVDYLVKSEFQVFVVSWRNPTAAQRHWDL
                     DTYVAALLEAIGAVREITGSDDVNLHGACSGAMTISALLGHLASRGDKSVNAATLMVA
                     VLDNTADSQLGLFATPEAIAAAKQNSTSKGVLAGEEMGRVFAWMRPNDLIWNYWVNNY
                     LLGKSPPVFDILYWNNDATRLPAAMHGQLLDIFTGNLFSKPRALTVLGTPIDLSEVTC
                     DKYVVAGMTDHITPWKGVYNTARTFGGDTRFVLSSSGHIQSLINPPGNPKAKFFLNAD
                     LTTNADAWLANARAEKDTWWVDWRTWLADHSGERKPAPAKLGNKRHPAGVKAPGTYVM
                     QA"
BASE COUNT          459 a          628 c          677 g          367 t
ORIGIN      
        1 tcgcgtgacg ctgatgtcgg tggacaagaa gagcggcggc cggatcatcg tcaagacgat
       61 gaacgaactg cagatagaag gcgaggagaa gccggcgctc gtcgccgaga ccttggcgat
      121 gctggtcgcg taagcggcgg gtaacggtga tgacaaagcg gacagagacg tttgaggagc
      181 ggcaagatgg cggcaaatga taaaagcaag gcacgcagcg aggagcagaa cgacctcgcg
      241 gcgtctgccg cggaaggcat gctcggaccg aatccgttcg tgggattgcg cccgcgcgac
      301 attctggcaa ccgcgcagca gattggcacc caggcgttgc ggcaacccac cttgctcatg
      361 gagcaggagg cggcgctcgt ccgcgatctg atggcggtgc ttgccggcag cgcggactgt
      421 gcgccgcctc agggcgacaa gcgcttcacc gatcctgcgt ggcaggacaa ttcgctttac
      481 cgtatggcga tgcaaggtta cgtcgcgtgg cgcagtgcgt tgacagggtt tgtcgagcgc
      541 tcctcgctcg acgcgaagag caaggaacgc gcgcagttcg tgctgtcgct gtacaccgat
      601 gccatgtcgc cgacaaacac gctgctcggc aatccggcgg cgctcaagaa agtcatcgat
      661 tcgggcggtg cgagcctgct cggcggcatg aagaacctcg tgacggacat gctgcagaac
      721 caggggatgc ccgcgcaagt cgacaagacg gcgttcaagg taggcgacaa tctcgccacg
      781 tcgccgggct cggtggtctt tcgcaacgat gtgctcgagc tgatccagta cacgccggca
      841 acggaacagg tgtacgcccg cccgcagctg atcgtgccgc cgcagatcaa caagttctac
      901 attttcgacc tgtcggacgg caagagcatt gtcgactatc tggtgaagag cgagttccag
      961 gtgttcgtgg tgagctggcg caatcccacc gctgcccaga ggcactggga tctcgatacc
     1021 tatgttgccg cgctcctcga agcgatcggg gcggtgcgtg aaattaccgg cagcgacgac
     1081 gtcaacctgc acggcgcctg ttcgggtgcg atgacgatat cggcgctgct cggccacctt
     1141 gcaagccgtg gtgacaagag cgtcaatgcc gccacgctga tggtcgccgt gctggacaat
     1201 acggctgact cgcaactcgg tctctttgca acgccggaag ccatcgcggc cgcaaagcag
     1261 aacagcacat cgaagggcgt gctcgccggc gaagaaatgg gccgtgtgtt cgcgtggatg
     1321 agacccaacg atctcatctg gaactactgg gtcaataact atctgctcgg taaatcgccg
     1381 cccgttttcg acatcctcta ttggaacaac gacgcgaccc ggctaccggc ggcaatgcat
     1441 gggcaattgc tcgatatctt cacgggcaat ctgttcagca agcctcgcgc gctgacggtc
     1501 ctgggtacgc cgatcgacct gtctgaagtg acgtgtgaca aatacgtggt agccggcatg
     1561 accgatcaca tcacgccgtg gaagggcgtg tacaacacgg cgcgcacgtt cggcggcgac
     1621 acgcgcttcg tactgagttc aagcggccat atccagagcc tgatcaaccc gccgggcaat
     1681 ccgaaggcga agttcttcct caatgccgat ttgaccacca atgccgacgc atggctcgcc
     1741 aacgcgcggg ctgaaaagga cacgtggtgg gtcgactggc gcacgtggct cgccgaccat
     1801 tccggcgagc ggaagcccgc accggcaaag ctcggcaaca agcggcaccc ggccggcgtg
     1861 aaggcgccgg gaacgtatgt catgcaagca taaggcacac gcgctggcgc acccgttgac
     1921 cgcacggtgg tcgacatttt cttaacgtag tttcatagga gtattgatga tggattcaac
     1981 caacccgaac agcattttcg ccgagtacaa gaaagtcatt ggacagttca agctgcccgg
     2041 catggacgtc aacgcgatcc tcgagacgcg ccgcaaggac atcgaggcga tcgccgaagc
     2101 caacacgacc gcgcttgcag gcgtgcagtc g
//
LOCUS       DATGBK010001272         1552 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_200718, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001272 DATGBK010000000
VERSION     DATGBK010001272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200718"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            193..696
                     /locus_tag="VKJ77_17800"
     CDS             193..696
                     /locus_tag="VKJ77_17800"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HMC47176.1"
                     /translation="MIECHIAPSPLGHLAYRAEDDCLTGLFFVGQKHFPAGLIDTGAP
                     KSRAIVAAKEQIAEYFAGERTVFSVPLRLNGTEFQQRVWAALQEIPFGTSWTYGDLAR
                     RMGVAAGASRAVGGANGRNPVGIIVPCHRVIGADGELTGYAGGVERKQHLLTLEGGPG
                     RAQLTLF"
     gene            complement(802..1506)
                     /locus_tag="VKJ77_17805"
     CDS             complement(802..1506)
                     /locus_tag="VKJ77_17805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006767194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HMC47177.1"
                     /translation="MSNKLIAAGLLSIGALAGCSTASGPTFNGNEIQTANGAQVYRVE
                     CHGLFEGVAACVKQAQKICGDKPAYKLETMERLRAPSEDAADPRVLTFQCGAPAQPEV
                     APAPVPAPVPQAAPEMPRQIDLSGDANFATDSATLTPKATDTLDEFVSAGQGVTLRQV
                     AVAGYTDSTGSASHNRQLSQRRAESVMQYLKTHGLRSQSYTAQGFGASNPVASNSTVA
                     GRAKNRRVEIRVSTQQ"
BASE COUNT          312 a          453 c          479 g          308 t
ORIGIN      
        1 cctggaaatc acacgcgaca agactggttt gaccacggca cttgcgctgc aaaaggcgat
       61 aaacgctatc gtcgatgcct tgcagaatga cgcaaaccta cccgtgaaac tcgccgatga
      121 accgccgaaa ccagcaggca agacggataa tccgttcatc tgagcgttaa aaaaattggc
      181 cggagacgta ccttgatcga atgccacatt gcaccgagtc cgctgggcca cctcgcgtat
      241 cgcgcggagg acgactgcct gacgggattg ttcttcgtcg gccagaaaca ctttcccgct
      301 ggtctcatcg atacgggggc gccaaagtca cgtgcgatcg tcgcagcgaa ggaacagatc
      361 gcggaatact tcgccggtga gcgcacggtg ttttccgtgc cgttgcggct caatggcacc
      421 gagttccagc agcgtgtatg ggcggcgttg caagagatcc cgttcggcac atcctggacc
      481 tacggcgatc ttgcacgccg aatgggcgtg gccgcgggag cgtcgcgagc cgtgggcggc
      541 gcgaacgggc gcaatcccgt ggggatcatc gtgccgtgtc atcgcgtgat aggcgctgat
      601 ggagagctga ccggttatgc cggtggtgta gagcgcaagc agcatctgct gacgcttgaa
      661 ggtgggccag gacgcgcgca actcacgctg ttctgaacgt acgtgcataa aaaaaccccc
      721 gcaggcgcta cgcgcctgcg ggggttttac gcttctggac gcctggcaac agcgttcggt
      781 gcgttgaaac tgctacatcg attattgctg cgtgctgacg cgaatttcca ctcggcgatt
      841 cttggcgcgg ccagcgacgg tcgagttcga tgcgacggga ttcgacgcgc caaacccttg
      901 cgccgtgtag ctttgcgaac gcaggccatg ggtcttcaaa tattgcatca ccgattccgc
      961 acggcgttgc gacaactgac ggttgtgcga agccgaacct gtcgaatccg tgtagcccgc
     1021 aaccgcgacc tgacgcaacg tcacgccttg gccggcagac acgaactcgt cgagcgtgtc
     1081 agtcgctttc ggcgtcagcg tagcgctgtc ggtagcgaag ttagcgtcgc cgctcagatc
     1141 gatctggcgg ggcatttccg gcgcggcttg cggcacagga gccggcaccg gcgccggtgc
     1201 aacttccggc tgagcgggcg cgccgcattg gaacgtcagg acacgcggat cggccgcgtc
     1261 ttcagacggg gcgcgcaggc gttccatggt ttcgagcttg tacgctggct tgtcgccgca
     1321 aattttctgg gcttgcttca cgcatgccgc gacaccttcg aacaaaccat gacattccac
     1381 gcgataaacc tgcgcgccat tggccgtctg gatctcgttg ccgttgaaag tcgggcccga
     1441 cgcggtagag cagccagcga gcgcaccgat tgacaacaga cctgcagcga ttagtttatt
     1501 ggacatcttg tttaccattc ttaaattgac gtgtgactga gatatcgaga ca
//
LOCUS       DATGBK010001273         2365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_315994, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001273 DATGBK010000000
VERSION     DATGBK010001273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315994"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..564)
                     /locus_tag="VKJ77_17810"
     CDS             complement(<1..564)
                     /locus_tag="VKJ77_17810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HMC47178.1"
                     /translation="MSGLDAVGRHLAWPRPLAQLAAFLRSELSAFPGRANVTMRCVLG
                     CAIVIVVSMTLQVPELALSLIAVFFVTQSNIVLTRLVAVMAVIGTTCAIACIIGVYRL
                     TFDYPLLRIIVASAIFFCSAYLMRAVAKLGLVFFLVSLIVIYAQTFADQTDNAEALVR
                     DCLWVWVAVNYSVVLSLIINTLFLPAEP"
     gene            complement(561..1652)
                     /gene="mdtN"
                     /locus_tag="VKJ77_17815"
     CDS             complement(561..1652)
                     /gene="mdtN"
                     /locus_tag="VKJ77_17815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtN"
                     /protein_id="HMC47179.1"
                     /translation="MTAAQSTDAGKQRPRTWPAMLLIVLAVVALIVVIWRVDTVPRTD
                     DAYAYADTIGVSPEVSGKIVTLAVRNNQAVKQGDLLFEIDPRPYQFALQRAQAALAQL
                     DAQIPLTQRTVNAQGYSADAAKSAVVRAQTAAKQAGDTLARMEPLIGKGYISADELDR
                     AHTAQRAAQAELAAAQAQAREAQAAVSSVAALVAQRAVLVAEIATAQLNLEYATVRAP
                     FDGRVVELLTSVGQFVSAQKPVFTLIDTRHWYVIANFRENELGNIRPGTRTTVYLMSN
                     TNLRFSGSVDSIGFGVDPQDGGGTANGLPNIQRSINWVHVAQRFPVKIRVDHPDPQLF
                     RIGTSAVAVLQPERRDSHDSRTTPNGAPS"
     gene            complement(1705..1983)
                     /locus_tag="VKJ77_17820"
     CDS             complement(1705..1983)
                     /locus_tag="VKJ77_17820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtcA family lipoprotein"
                     /protein_id="HMC47180.1"
                     /translation="MSCGLRPQRHAWTILMSCTLLAGCSDAPSVGVLGAYFPDWLFCI
                     VGGVLLVACVHVLLSRSGRHDWLAPPAIVYPALTVLFSIAVWVVGFNL"
     gene            complement(2024..>2365)
                     /locus_tag="VKJ77_17825"
     CDS             complement(2024..>2365)
                     /locus_tag="VKJ77_17825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019924340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HMC47181.1"
                     /translation="NGTLGFVEIEMRASGFVDTGTELVNPNFARMAEAVGVKGIRVEK
                     PQELEGALAEALAHDGPALVDVVSARQELIMPPKTTIDEAWHFGVFMMKAVMDGRGSE
                     LIDLAKVNLTR"
BASE COUNT          453 a          765 c          755 g          392 t
ORIGIN      
        1 tggttcggct ggcagaaaca gcgtgttgat gatcagcgac aggacaactg agtagttgac
       61 cgccacccac acccacagac agtcacgcac cagcgcttcc gcgttatcgg tctgatcggc
      121 aaaggtctgc gcgtagatca cgatcagcga gacgagaaag aacaccagcc ccagtttcgc
      181 cacggcccgc atcagataag cgctgcagaa aaagatggcg cttgcgacga tgatgcgcag
      241 cagcgggtaa tcgaacgtca gcctgtagac gccgatgatg caggcgatcg cgcaggtcgt
      301 gccgatcacg gccatcaccg cgaccaggcg agtcagcacg atgttcgact gcgtgacgaa
      361 gaacaccgct atcagcgaca acgccaactc tggcacctgc aaggtcatcg acacgacaat
      421 cacgatcgcg cagccgagca cgcagcgcat ggtcacgttg gcgcgccccg gaaacgcgga
      481 gagctccgag cgcaggaagg ccgccagttg cgcgagtggc cgcggccacg cgagatgtcg
      541 cccgacggca tcgaggccgc tcatgacggc gctccattgg gcgtcgtgcg gctgtcgtgg
      601 ctgtcgcgcc gttcaggctg cagcacggcg acggcggacg tgccgatccg gaacagttgc
      661 ggatcgggat gatcaacccg gatcttcacc gggaagcgct gcgcgacgtg cacccagttg
      721 atgctgcgct ggatgttcgg cagaccattc gcggtgcccc cgccgtcctg cggatcgact
      781 ccgaagccga tcgagtcgac cgagccgctg aagcgaaggt tagtattgct catcaggtac
      841 acggtcgtgc gggtgccggg ccggatgttg ccgagctcgt tctcgcggaa gttggcgatc
      901 acgtaccagt gccgcgtatc gatcagcgtg aagacaggct tctgcgcgga cacgaattgc
      961 ccgacggacg tgagcaactc aacgacgcgg ccatcgaacg gcgcacgcac ggtcgcgtac
     1021 tcaaggttga gctgcgccgt cgcgatttcg gcgaccagca ccgcgcgctg cgcgacaagc
     1081 gcggcgacgc tgctgaccgc cgcttgcgcc tctcgcgcct gtgcttgcgc ggccgcgagc
     1141 tcggcctgtg cggcgcgttg cgcggtgtgc gcgcggtcca gttcgtcggc ggagatgtag
     1201 cctttcccga tcagcggctc cattctcgcc agcgtgtcgc ccgcctgctt cgcggcggtc
     1261 tgtgcgcgca cgaccgccga ctttgcagcg tcggcgctgt agccctgcgc attcacggtg
     1321 cgctgcgtca gcggaatctg cgcatcgagt tgcgcgagcg ccgcctgcgc gcgttgcaac
     1381 gcgaattgat acggccgcgg gtcgatctcg aacagcagat caccctgctt gaccgcctgg
     1441 ttgttgcgca ccgcgagcgt cacgatcttg ccgctgactt cgggcgagac accgatcgtg
     1501 tcggcgtatg catacgcatc gtcggtacgc ggcacggtat ccacgcgcca gatcacgacg
     1561 atgagagcga ccacggccag cacgatcagc agcatggcgg gccaggttcg cggacgctgc
     1621 tttccggcgt cggtgctttg ggcagcggtc atgtcagacg gtcgactaaa ggttaaagag
     1681 gttaaatggg tgaagggttg aaggctaaag gttgaaacct acgacccaga ccgcgatcga
     1741 aaacagcacc gttagcgccg ggtagacgat cgcgggcggc gcgagccaat cgtggcggcc
     1801 gctgcgcgac agcagcacgt gcacgcacgc gaccagcagc acgccgccca cgatgcagaa
     1861 cagccagtcc ggaaaatacg cgcccagcac gccgaccgac ggcgcgtcgc tacagccggc
     1921 aagcagcgtg cacgacatca ggatcgtcca cgcatggcgc tgagggcgca aaccacacga
     1981 catcaccgtc tccctctaat ggcagccaat gaagcaaacc gcttcatcgc gtcaggttca
     2041 ctttcgcgag atcaatcagc tcgctgccgc gtccatccat caccgccttc atcatgaaga
     2101 cgccgaaatg ccaagcttca tcgatggtgg tcttaggcgg catgatcagt tcctggcgcg
     2161 cgctgacaac gtcgacgagc gcgggcccgt cgtgtgcgag cgcctctgcg agcgcgcctt
     2221 cgagctcctg cggtttctcg acgcggatgc ccttcacgcc cactgcttcg gccatgcgcg
     2281 cgaagtttgg attgacgagt tcggtgccgg tatcgacgaa gcccgacgcg cgcatttcga
     2341 tctccacgaa gcccagcgtg ccgtt
//
LOCUS       DATGBK010001274         2006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_130768, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001274 DATGBK010000000
VERSION     DATGBK010001274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130768"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..422)
                     /locus_tag="VKJ77_17830"
     CDS             complement(<1..422)
                     /locus_tag="VKJ77_17830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004628293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HMC47182.1"
                     /translation="MFGFLRSYFSNDLAIDLGTANTLIYMRGKGIVLDEPSVVSIRQE
                     GGPNGKKTIQAVGREAKQMLGKVPGNIEAIRPMKDGVIADFTVTEQMIKQFIKTAHES
                     RMFSPSPRIIICVPCGSTQVERRAIKEAAHGAGASQVYL"
     gene            802..1101
                     /gene="gatC"
                     /locus_tag="VKJ77_17835"
     CDS             802..1101
                     /gene="gatC"
                     /locus_tag="VKJ77_17835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012399478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HMC47183.1"
                     /translation="MSLTLTDVKRIAHLARLELPEHEDEPTLARLNDFFGLVEQMQAV
                     DTTGIEPLAHPIEQIEKAELRLRNDVVTEHVNREEFQRPAPAVRDGLYLVPKVIE"
     gene            1225..>2006
                     /locus_tag="VKJ77_17840"
     CDS             1225..>2006
                     /locus_tag="VKJ77_17840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HMC47184.1"
                     /translation="MHQKSLTELRAALDAKTLSAVELAQLFLQRIDAAKDLNAFISVD
                     HELTLDQAKAADALIAKGEAGVLTGLPIAHKDVFVTRGWTSTAGSKMLANYASPFDAT
                     VVERLKNAGVVTLGKTNMDEFAMGSSNENSYFGPVKNPWDRKAVPGGSSGGSAAAVAA
                     RLAPAATGTDTGGSIRQPASFTGITGIKPTYGRVSRYGMIAFASSLDQGGPMARSAAD
                     CALLLNAIASFDPRDSTSLQREDEDYTRYIGQNWSGTDVAKPL"
BASE COUNT          436 a          582 c          587 g          401 t
ORIGIN      
        1 aggtacacct gcgacgcacc ggcgccgtgt gcagcttcct tgatcgcgcg gcgttcgacc
       61 tgggtcgaac cgcacggcac gcagatgatg atgcgcggcg aaggcgagaa catacgcgat
      121 tcgtgcgcag tcttgatgaa ctgcttgatc atctgttccg tgacggtgaa gtcggcaatc
      181 acgccgtcct tcatgggccg gatagcttca atgttgcccg gcaccttgcc gagcatctgc
      241 ttcgcttcgc ggccgacggc ctgaatggtt ttcttgccat tgggaccgcc ttcctggcga
      301 atggaaacca ccgatggctc gtcaaggacg atgcccttgc cccgcatgta gatcagcgtg
      361 ttggcggtgc cgagatcaat cgccagatcg tttgaaaagt agctgcgcaa aaaaccgaac
      421 attcaaaatc ctgtctcgct gggagccgtg cctcgcttcg agcgccaaag gacggcagcg
      481 gaaaaaaatg acagcctgca gcgggaccca tttttggcca cgcaaattgc aagactgcgg
      541 agaaatctac cggaggatgc aagcgaacca ggcatgcact tttcttaaaa atctgtaact
      601 aagaacaggc tgctggtaag tcgatccgga tttgggtcga acgcgtaatg ataccttata
      661 attttggggt gttcgaagga aaaggacggt acattttgcc accgtcaagc ctgcttttta
      721 gggctccttt atctcgaatt gcagtcgcgc tgtttgttgc actgtttctc agtgtgtaag
      781 tcgaaaaaac ccggtgatcg aatgtctctg accctgaccg atgtaaaacg cattgcgcac
      841 ctcgcgcggc tcgaattgcc cgagcacgag gacgaaccca cgcttgcgcg gctgaacgac
      901 ttcttcggtc tcgtcgagca aatgcaggcg gtggatacca cgggtatcga accgcttgct
      961 catccgatcg aacagatcga gaaagccgag ctgcgtttgc gaaacgatgt ggttacagag
     1021 catgtaaacc gcgaagagtt ccaaaggcct gcgcctgccg tgcgcgacgg gctgtatctc
     1081 gtgcccaagg tgatcgaatg aacgtcgtgc tctgagtcag cgcctctgag gctatgtaat
     1141 tgaggcgatg caacatacgc acgaaaacaa aaaggcgcgc ggtatctgct tagccggtac
     1201 ccggcgccca tcaggaagaa cgcaatgcat caaaaaagct tgaccgaact gcgcgcggct
     1261 ctcgacgcaa agaccctttc cgccgtcgaa ctcgcgcagc tctttttgca gcgcatcgac
     1321 gcagcgaagg atctcaacgc gttcatcagc gttgaccatg aactcacgct tgaccaggcg
     1381 aaagcagcgg atgcgctgat cgccaagggc gaggcaggcg tgctgaccgg cctgccgatc
     1441 gcgcataaag acgtgtttgt cacgcgcggc tggacctcca cggccggctc gaaaatgctc
     1501 gccaactacg cgagcccgtt cgacgccacc gttgtcgagc gcctcaagaa cgcaggcgtg
     1561 gtgacgctcg gcaagaccaa tatggacgaa ttcgcgatgg gttcgtccaa tgagaattcg
     1621 tatttcggcc cggtcaagaa cccctgggat cggaaagccg ttccgggtgg ctcatcgggc
     1681 ggctcggctg cggcggtcgc cgcacgcttg gcgccggctg ccaccggcac tgacaccggc
     1741 ggctcgattc gccaaccggc gtcgttcacc ggcattaccg gaatcaagcc gacgtacggg
     1801 cgcgtttcgc gttacggcat gatcgcgttc gcgtcgtcgc tcgatcaggg cggaccgatg
     1861 gctcgcagcg ccgcggattg cgcattgttg ctcaacgcca ttgcgtcgtt cgatccgcgc
     1921 gattcaacca gcctccagcg cgaggacgaa gattacacgc gctatatcgg ccagaactgg
     1981 tccggtacgg acgtggccaa accgct
//
LOCUS       DATGBK010001275         2320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_130770, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001275 DATGBK010000000
VERSION     DATGBK010001275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130770"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VKJ77_17845"
     CDS             <1..200
                     /locus_tag="VKJ77_17845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47185.1"
                     /translation="AGLAAVVSPVAFGLITDMTGSYRLPFVMSIALLLVGIALSFWIR
                     PDRPLQGSAPNLSTESLGVHS"
     gene            197..949
                     /locus_tag="VKJ77_17850"
     CDS             197..949
                     /locus_tag="VKJ77_17850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC47186.1"
                     /translation="MKAEISGVAVVTGSARNIGREIALELAAAGNAVIVNARSSAAEA
                     AEVMRAIEATGGRAAVHLADVSEPAGAQSLVEAAIRHFGQIDILINNAAVRREVPFEE
                     LDFARWREVMSVILDGAYLCAHAALPYLRQSNAGAIVNIGGMSAHAGSAGRAHVIAAK
                     AGLVGLTRALAHDLGPDGITVNCVVPGLIATVRGGSAGNSEPAHHAERTTLLGRRGQP
                     DEVASLVQFLCGPTARYVTGQTIHANGGAFLG"
     gene            1128..2297
                     /locus_tag="VKJ77_17855"
     CDS             1128..2297
                     /locus_tag="VKJ77_17855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC47187.1"
                     /translation="MRKSLFALSILSTVAGTVHAQSTMTLYGILDEGLMINTNAKNVV
                     NGKNVGGRQFSVDSNAGTQGSRWGMRGAEDLGGGTTAIFVLESGINVSTGAFGQGGTA
                     FGRQAYVGLASNSLGSVTLGRQYDSINDYVGNYGFAAAYGGSTTEHPGDLDNVNHTFR
                     ANSTIKYASTNFNGLTFGGTASLGGVAGEISQSSGYSLGANYGNGPVGIGVAFELFRN
                     PAALGSILNSNASVATFNSLNSGYLGTKPANSMQIITTGGSYQFGAAKIGAVYSNTKY
                     MNIGAFNGATATFNSYELNAFYRLTTALSLSGEYNYTKGNAVKGDIGDQKYNQFSLLL
                     DYALSKRTDVYLLGTFQTASGTSSTGAAAVADIGSLGDSSNNHQAVARIAIHHKF"
BASE COUNT          468 a          671 c          730 g          451 t
ORIGIN      
        1 cggccggtct cgcggcggtc gtgtcaccgg tcgcgttcgg cctgatcacc gacatgacgg
       61 gcagctatcg cttgccgttc gtgatgtcga ttgcgctgtt gctggtaggc attgcgctgt
      121 cattctggat tcgtcccgac cggccgctgc aaggcagcgc accgaattta tctacggaat
      181 cactgggagt gcattcatga aagcagaaat cagcggcgtc gcggtcgtca ccggatcggc
      241 gcgcaacatc ggccgcgaga ttgcgctgga actcgcggcg gcgggcaatg cggtgatcgt
      301 caatgcgcgc agttccgccg ccgaggcggc cgaagtcatg cgtgcgatcg aggcaacggg
      361 ggggcgcgcg gccgtgcatc tggccgacgt cagcgaaccg gcgggcgcgc aaagcctggt
      421 ggaagccgcg attcgccatt tcgggcagat cgatattctc atcaacaatg ccgccgtgcg
      481 tcgcgaagtg ccgtttgagg aactggattt cgcgcgctgg cgcgaagtga tgtcggtgat
      541 tctcgacggt gcgtatctct gcgcgcacgc agcattgccc tatctgcggc aatcgaacgc
      601 cggtgcgatc gtcaatatcg gcggtatgtc cgcgcatgcg ggttcggctg gacgcgcgca
      661 cgtaatcgcc gcgaaggcgg ggctcgtggg tttgacgcgc gcactggcgc acgatctggg
      721 tccggacggc attacggtca attgcgtggt gcccggtttg atcgcgaccg tgcgcggcgg
      781 ctcagcgggc aacagcgaac ctgcgcacca cgctgaacgc accaccttgc tcggccggcg
      841 cggccagccc gacgaagtcg cgagcctcgt gcagtttctg tgcggcccga cagcacgcta
      901 cgtgaccggc caaacgattc atgcgaacgg cggcgctttt ctaggctgac cgtctgactg
      961 cggtgccccc ggggcgtcat ccacgcgccg cagtcgaccc gcttcacgtc aaatccgatg
     1021 tcgccggttt cgtaggagga ctgcttatgc agtaacgata gtatattaag tattcctata
     1081 tataaaaatt acacataaat aaatcaagac ttggtggaga agacaaaatg aggaagtcgc
     1141 tttttgcatt gtcgatattg agtaccgtcg cgggaaccgt tcatgcgcaa agcacgatga
     1201 cgttgtacgg tatcctcgat gaaggcttga tgatcaacac gaacgcgaag aacgtggtga
     1261 atggcaagaa cgtcggcggc aggcaatttt cggtcgattc caacgctggg acgcagggca
     1321 gtcgctgggg catgcggggc gccgaagatc tgggcggcgg cacgacagcg atctttgtgc
     1381 tggagtcagg catcaacgtc agcacgggcg cgttcggaca aggtggcacc gcgttcggcc
     1441 ggcaagccta tgtgggcctc gcgagcaact ccttgggttc cgtgacgttg ggccgtcagt
     1501 acgacagcat caacgactac gtcggcaact acggctttgc cgcagcctac ggcggatcga
     1561 cgacagaaca tccgggcgac ctcgataacg tcaaccacac gttccgcgcg aacagcacga
     1621 tcaaatatgc gagcaccaat ttcaacggtc tgaccttcgg cggcaccgcg agtctgggcg
     1681 gcgtggcggg cgagatttcg caatcgagcg gatacagcct cggcgcgaac tacggaaacg
     1741 gcccggtcgg tattggggtt gcgttcgaac tgttcaggaa tccggccgcg ctgggctcga
     1801 tcctgaacag caacgcgagt gtcgcgacgt tcaactcgct gaattccggt tatctaggca
     1861 cgaaacccgc caactcgatg cagatcatca cgacgggcgg ctcgtatcaa ttcggcgcgg
     1921 caaagatcgg cgcggtgtac tcgaatacca agtacatgaa catcggcgcg ttcaacggcg
     1981 cgaccgcaac cttcaacagt tatgaactga acgcgtttta tcgcctcacg acggcgctgt
     2041 ctctttcggg cgaatacaac tatacgaagg gcaatgcagt gaagggcgac attggcgacc
     2101 agaagtacaa ccagttctcg ttgctgctcg actatgcgct gtccaagcgt actgacgtct
     2161 atctccttgg cacgttccag accgcaagcg gcacgagttc gacgggcgct gcggcggtcg
     2221 cggatattgg cagtctcggc gattcgtcga acaatcatca ggccgtggcg cgcatcgcga
     2281 ttcaccataa attctaggtg cgctgctttt ccccgcgcaa
//
LOCUS       DATGBK010001276         1803 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_130785, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001276 DATGBK010000000
VERSION     DATGBK010001276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130785"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /locus_tag="VKJ77_17860"
     CDS             <1..969
                     /locus_tag="VKJ77_17860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47188.1"
                     /translation="WQMIVVWGVLVGGATGVAAITLAATVVNRWFTSHRGLAMGILTA
                     SSATGQLVFLPMLAAITERFGWRPMVLVVAAAAAVVLPLVAWLLPERPADLVLRPFGE
                     GADSPPPIPVAQKNPIALAFGTLGMASKTRDFWLLSGSFFICGASTNGYIGTHLIAMC
                     ADHGMTEVQGAGLLAAMGIFDLFGTTLSGWLSDRFNARVLLFWYYGLRGLSLMFLPHA
                     FGIDFYGLPVFAVFYGLDWVATVPPTVRLATDVYGKESAPIVFGWVVAAHQFGAAFAA
                     LGGGMLRASLGTYTVATMISGSLCIVAAVMVLRINKAPRSMQAVAT"
     gene            1108..1704
                     /locus_tag="VKJ77_17865"
     CDS             1108..1704
                     /locus_tag="VKJ77_17865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HMC47189.1"
                     /translation="MTEKIAPTEVAIDALLAGRWSPRAISNKAVSREQLHSVLEAARW
                     APSSYNMQPWRFLTFDRNHDEAAFQKAFATLVPFNQGWNAHVPVLICVLAKTLTPKGD
                     VSRTAQYDAGAAAMSLVLQAHALGLIAHQMAGFDVNAFREAFSPPDDVEAIAMIALGH
                     HGDPASLDEVLLERENAPRSRSAIGEIAFDGAWGKAFK"
BASE COUNT          285 a          536 c          594 g          388 t
ORIGIN      
        1 tggcagatga tcgtggtgtg gggcgtgctg gtaggcggag ccaccggcgt tgccgccatc
       61 acactggcgg caacggtggt gaatcgctgg ttcacgtcgc atcgcggatt ggcgatgggg
      121 attctcaccg ccagttcggc cactggtcag ctcgtgttcc tgccgatgct cgcggcgatc
      181 accgagcgct tcggctggcg tcccatggtg cttgtcgtcg cagcggccgc ggcggtcgtg
      241 ttgcccctgg tggcgtggct gctgcccgag cgtcccgccg atctcgtgct gcgccctttc
      301 ggcgaaggcg ccgactcgcc gccgcctatt cccgtcgcgc agaagaatcc gatcgcgctt
      361 gctttcggca cgctgggcat ggcgagcaag acgcgcgatt tctggctgct gtccggcagc
      421 ttttttatct gcggcgcgag cacgaatgga tatatcggaa cgcatctgat cgcaatgtgc
      481 gccgatcacg gcatgaccga agtgcagggt gcgggccttc tcgccgccat gggtattttc
      541 gatctcttcg gcaccacact ctccggctgg ctgtccgacc gcttcaacgc ccgcgtgctg
      601 ctgttctggt actacggctt gcgcgggttg tcgctgatgt ttctgccgca cgcgtttggt
      661 atcgacttct atggtttgcc ggtcttcgcc gtgttctacg ggctggattg ggtggcaact
      721 gtaccgccga cagtccggct tgctaccgac gtctacggca aggagtcggc gcctatcgta
      781 tttggctggg tcgtggcggc gcatcagttc ggcgcggcgt ttgcggcact tggcggaggc
      841 atgctgcgcg cgagcctcgg cacctacacc gtcgcgacga tgatttccgg cagcctgtgt
      901 attgtcgccg cggtaatggt cttgcgaatc aacaaggcgc cgcgttcgat gcaggcggtg
      961 gcgacctgac agcgaccgct cgccggcgtg ccggcggagt ggcgaattca atgtcgcagc
     1021 gcgggtttgc cagcttggtt attcttacgg tcttgcagcg tgcatgtgag cgcacgctgt
     1081 ccggatcaac taaccaggga ctgctgcatg accgaaaaaa tcgcacctac tgaagtcgca
     1141 atcgatgcgc tgctggccgg ccgctggagc ccgcgggcga tctcgaacaa ggcggtgagc
     1201 cgcgagcaat tgcatagcgt gctggaggct gcgcgctggg cgccgtcttc gtacaacatg
     1261 cagccgtggc gtttcctgac cttcgatcgt aaccacgacg aagccgcttt ccagaaggct
     1321 ttcgccacgt tggtgccgtt caaccaaggc tggaacgccc atgtgcccgt gttgatttgc
     1381 gtgctggcga aaaccttgac gcctaagggc gatgtgagcc gcacggctca gtacgatgcg
     1441 ggcgcagctg cgatgtcgct cgtgctccag gcacacgcgc tcggtctgat cgcgcaccaa
     1501 atggccggtt tcgatgtcaa cgcgttccgc gaggcgttct cgccgccaga cgatgtagaa
     1561 gcgatcgcga tgattgcgct gggacatcac ggcgatcccg cttcgctcga cgaagtcctg
     1621 ctggagcgtg aaaacgcacc gcgctcgcgc tcggcgattg gcgaaatcgc gttcgatggc
     1681 gcttggggca aggcgttcaa ataagcgttt tgagtggctg cacatgcatg ctggaaaagc
     1741 gcggttgtcg gatagatgcc gcgcgatcgc gataagcgtg cgacgaagtc ataatcctga
     1801 atc
//
LOCUS       DATGBK010001277         3869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_177147, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001277 DATGBK010000000
VERSION     DATGBK010001277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3869
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177147"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            90..878
                     /locus_tag="VKJ77_17870"
     CDS             90..878
                     /locus_tag="VKJ77_17870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47190.1"
                     /translation="MQTDAATPRVRMENITKSYGAVQSLRGVDLHVMPGEVLGLVGDN
                     GAGKSTVSKVLSGAVIPDTGSIEIDGKRVSFSDPGDARAHHIEMVYQDLSLCNTVDVA
                     GNLFLGREPMRRICGVPVLDHRKMHHDAREMLNNLGIRIPSTKLDVENLSGGQRQAFA
                     ISRAVSFDRKVLIMDEPTAALAVAEVEAVLELVRTISERGVSVILISHRLQDLFLVCD
                     RISVMYEGQNVADRKIGETNLEEIVDLIVGHKFSARSARALAEN"
     gene            880..1884
                     /locus_tag="VKJ77_17875"
     CDS             880..1884
                     /locus_tag="VKJ77_17875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004954891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47191.1"
                     /translation="MELAMHDNKSKAPRLPLRHLLGRNAGVASIAAFFIVCALAFTLT
                     THTFLTAGNLLNVLRQSAPLLIVATTMTLVITTGGIDLSIGSTLALVGALSAIALRAG
                     APGIVVLLGGLSLGALIGAINGYFIAFAGMPAFIVTLGTLSVVRGIALLITQGFSVPI
                     ENDGWFVELGRGRLLGMPTPAVIAIVTLLAGWVTLRHTRFGRYVTGIGTNSEGVRRAG
                     VNVKGVTLKVYVLSGAAAGLAGLITTARLGSGSSNQGVGFELAVIAAVVLGSTDLFGG
                     RGTILGTLLGALTIAVLGNGLILINVSPFYTQIIQGAIMLLAIWLNTRIFSAQRRKKG
                     "
     gene            1888..2967
                     /locus_tag="VKJ77_17880"
     CDS             1888..2967
                     /locus_tag="VKJ77_17880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase-related protein"
                     /protein_id="HMC47192.1"
                     /translation="MSSIFRRDAPLPIGIGSGHVMTVLGPLPVAQMGVTLMHEHILLD
                     ASGKWVPPSCCSDRFIGEQKVHIGILGALRMNPLMNRDNCQLFDAEVAVEELMRFREL
                     GGNTVVDPTNLGIGRDPAALQRISRRTGLNIVMSTGFYLEPSHPDYVKHKSIDDLATQ
                     LIADVGGAAEKPDVVAGMIGEIGVSAEFTANEEKSLRAAARASAATHVPLSVHLPGWV
                     RHGHRVLDIVAEEGADLNHTVLCHMNPSHMDVEYQHSLAKRGAWLEYDMIGMEYFYAD
                     ENAQSPSDEENARAIKALIDAGFIDRILMSQDVFMKIMLTRFGGHGYGYILKYFVPRL
                     RRHGVTNEQIETMMIANPASVFSGR"
     gene            3056..3814
                     /locus_tag="VKJ77_17885"
     CDS             3056..3814
                     /locus_tag="VKJ77_17885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase"
                     /protein_id="HMC47193.1"
                     /translation="MTKSVLLAGESWTSMSTHIKGFDQFPTVTYQNGATIFLDIFKDS
                     DYAITHMPSHEAQEAFPSTLDGLLAYDAIILSDIGANTLLLHPDTWVRSQRTPNRLKL
                     LREYVEAGRGLMMIGGYLSFQGINGSARFRNTPVEDVLPVTCLPYDDRVEVPEGFTAN
                     VVASHPVVEGLGTQWPHLLGYNEVQLKAGATLIATVPETGHPLLVAGTHGRGRTLAWT
                     SDMSSHWLPPEFSAWEGNARLWTNCLDWLTSDEK"
BASE COUNT          767 a         1131 c         1200 g          771 t
ORIGIN      
        1 gaacgtcggt aaataccggg ccatcttcaa gtaagccctg caactaagcc ctttaagtga
       61 gcccgcttcg gcctttctcg gagaacgtta tgcaaaccga tgctgcaacg ccgcgcgtgc
      121 gcatggagaa catcaccaag agttatggcg ccgtgcagtc gctgcgcggc gtcgacctgc
      181 acgtgatgcc cggcgaagtg ctcgggctcg ttggtgacaa cggcgcgggc aagtcgaccg
      241 tctcgaaggt gctgtcgggt gcggtgatac cggacaccgg cagcatcgaa atcgacggca
      301 agcgggtcag tttctccgac ccgggcgatg ctcgcgcgca tcacatcgaa atggtttatc
      361 aggatttgtc gctgtgcaat acggtcgatg tggccggtaa cctgttcctt ggccgcgagc
      421 ccatgcgccg catctgcggt gtgccggtgc tcgatcatcg caagatgcat cacgacgctc
      481 gcgagatgct gaacaacctc ggcatccgca tcccgagcac gaagctggac gtggaaaacc
      541 tgtcgggcgg tcagcgccag gccttcgcga tttcgcgggc ggtatcgttc gatcgcaaag
      601 tgttgatcat ggacgaaccc acggccgcgc tggccgtggc cgaagtcgaa gcggtgctgg
      661 aactcgtgcg cacgatcagc gagcgcggtg tcagcgtgat cctgatcagt caccgcctgc
      721 aggacttgtt cctcgtgtgc gaccgcatca gcgtgatgta cgaaggacag aacgtcgcgg
      781 accggaagat cggcgagacg aatctggaag agatcgtcga tctgatcgtg ggccataagt
      841 tcagcgcgcg ctcggcacgt gcgctcgcgg agaattgaca tggaactcgc catgcacgac
      901 aacaagtcca aggcgccgcg cctgccgctg cggcacttgc tcggccgcaa tgcgggcgta
      961 gcgagcatcg cagcattctt cattgtctgc gccctcgcct ttacgctcac gacgcacacg
     1021 tttctcacgg ccggcaacct gctcaacgtg ctgcgtcaaa gcgcgccgct gctgatcgtc
     1081 gccacgacaa tgacgcttgt catcacgaca ggcggtatcg acctgtcgat cggctccacg
     1141 ctcgcgctcg tgggtgcgct ctcggccatc gcgttgcgag ccggtgcacc gggtatcgtc
     1201 gtgctgctcg gtggcctctc gcttggcgca ctgatcggtg cgatcaacgg ctacttcatc
     1261 gcgtttgcgg gaatgccggc gttcatcgtg acattgggga cactgtcggt cgtgcgcggc
     1321 atcgcgttgc tgatcacaca aggtttttca gtgccgatcg aaaacgacgg ctggttcgtc
     1381 gaactgggcc gcggccgttt gctcggcatg ccaacgcccg cggtcatcgc gatcgtcacg
     1441 ctgctcgccg gatgggtcac gctccggcat acacggttcg ggcgctatgt gaccggcata
     1501 ggtaccaact cggaaggtgt aaggcgcgcg ggcgttaacg tgaaaggcgt cacgctgaag
     1561 gtctatgtcc tcagcggcgc ggcggcaggt ctggccggac ttatcacaac ggcgaggctc
     1621 ggcagtgggt cgtcgaatca gggtgttggt tttgaactcg cggtgatcgc tgcggtcgtg
     1681 ctcggtagta ctgatctctt tggcggcagg ggaaccattc tcggcacttt gctgggtgcg
     1741 ctgaccatcg ccgtgctcgg caacgggctg atcctgatca acgtttcgcc gttctatacg
     1801 cagatcatcc agggcgcgat catgctgctt gcgatatggc tcaatacgcg catcttctcg
     1861 gcgcaacggc gcaagaaagg ctaagcgatg agttcgatct tccgccgcga tgcaccgttg
     1921 ccaataggca tcggcagcgg ccacgtgatg accgtcctag gaccgctccc cgtcgcgcag
     1981 atgggggtaa cgctgatgca cgagcacatc ctgctggatg catcgggaaa atgggtgccg
     2041 ccgagttgct gcagcgaccg gttcatcggc gagcagaagg ttcatatcgg cattcttggt
     2101 gcgctgcgga tgaatcccct gatgaaccgc gacaactgcc agttgttcga tgcggaagta
     2161 gccgttgaag aactgatgcg ttttcgcgaa ctgggcggta atacggtggt cgatccgacc
     2221 aatctcggca ttggacgaga ccctgccgcg ctgcaacgga tctcacgccg gacaggcctg
     2281 aacattgtga tgtcgacggg gttttatctc gaaccctcgc atccggacta tgtgaaacac
     2341 aagtcgatcg acgacctggc cactcaactg attgccgacg tcggaggcgc tgctgaaaag
     2401 cccgatgtgg tcgccggaat gatcggcgag ataggcgtct cggccgagtt cacggccaac
     2461 gaggaaaagt cgctacgcgc tgccgcgaga gcgagtgcgg caacccatgt gccactgtct
     2521 gtgcatctgc ccggctgggt ccggcacgga catcgcgtgc tcgacatcgt ggccgaagaa
     2581 ggtgccgacc tgaaccacac cgtgctgtgc cacatgaacc cgagccacat ggatgtggag
     2641 taccagcact cgctcgccaa acgcggcgcc tggctcgagt acgacatgat cggcatggag
     2701 tatttctacg ccgacgaaaa cgcacaatca ccgtctgatg aagagaacgc ccgcgcgatc
     2761 aaggcgctga tcgacgccgg atttattgac aggatcctca tgtcgcagga cgtgttcatg
     2821 aagatcatgc tgacgcgttt tggcggccac ggttacggct acatcctcaa gtatttcgtg
     2881 cctcgtctgc gacgtcatgg cgtgacgaac gaacagattg aaacaatgat gattgcgaac
     2941 ccggcgagcg ttttctcggg cagataaaag cagttcgcac cacactatgt gaaccggttc
     3001 caccttgcgc cgcgtgccgc cgacacggtc cgccgcgcgc ttaaggagca catgcatgac
     3061 caaatctgtt ttgctcgccg gagagagctg gacgagcatg tcgacgcaca tcaagggctt
     3121 cgaccagttt ccaaccgtca cctatcaaaa cggcgccacg atcttcctgg atatcttcaa
     3181 ggacagtgac tatgcgatca cgcacatgcc gagccacgaa gcgcaggaag ccttcccctc
     3241 cacgctcgac ggattgcttg cttatgacgc gatcattctc tcggacatcg gcgcgaatac
     3301 gttgctgctg catcctgata cgtgggtcag gagccagcgc acaccgaacc gtctcaagct
     3361 gctgagagag tatgtggagg ccggacgagg cctgatgatg atcggcggct atttgagttt
     3421 ccagggtatc aacggcagcg cgcggtttcg caatacgccg gtcgaggacg tgttgccggt
     3481 cacctgcctg ccttacgacg atcgggtaga agttccggaa gggttcaccg cgaacgtagt
     3541 cgcttcgcac ccggtcgtcg aggggcttgg aacgcagtgg cctcacttgc tgggttataa
     3601 cgaagtgcag ttgaaagcgg gggcgacact gatcgcgacg gtgcccgaaa cgggccaccc
     3661 tttgttagtc gccgggacac acggccgcgg acgcacgctt gcgtggacca gcgatatgtc
     3721 aagtcactgg ttaccaccgg agttctccgc ctgggaaggc aacgcgcggc tatggacgaa
     3781 ctgtctcgac tggttgacct cggatgaaaa atgaacgcga atgaagcgcg cgtttgcgtt
     3841 atcggcaatg cggcaatcga cctggtgtt
//
LOCUS       DATGBK010001278         1745 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_84481, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001278 DATGBK010000000
VERSION     DATGBK010001278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84481"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..777
                     /locus_tag="VKJ77_17890"
     CDS             <1..777
                     /locus_tag="VKJ77_17890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006157002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47194.1"
                     /translation="GVSLFVRHARGMEPTIFGEAVMRYARVVFEDLDELREELAAIEA
                     GDIGKVRIGAVMAPAPELLTQAIVSLKEAHPRLQISVQIDTSDVLVQALQQDQLDIVI
                     GRIPDGFPALDLSFETLSEEALSIVARPDHPAAKATARPKLAELAQYPWIVQPHPSPM
                     RQIIDQTFRESRVAPPISTVETSSILTTLSLLRDSDMLAVLPSSVAQYYVALKTMTAL
                     PTPLRGRLAPYGLILRKNRRIRPATQLVIDVIRSGGAVAQ"
     gene            complement(771..>1745)
                     /locus_tag="VKJ77_17895"
     CDS             complement(771..>1745)
                     /locus_tag="VKJ77_17895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47195.1"
                     /translation="AALPAQARALTNWFPAEKRGFVQGLTHSFSRLGNALTPPLIALL
                     VAFASWRASFILVGVLTAIWVSVYAWYFTDNPRKHRHMTAEEALGLPPEGKVVVEKTH
                     APVPWRRLLKRIGPTMIVYFCYGWTGWLFFTWLPTFFMHGRGLDLKSSALFSAGVFLS
                     GVVGNTAGGVLSDRILKRTGNVVAARRNVIIGAFLGALVFLAPVLFVKSLPVMAASMS
                     LSFFFLEMTIGPIWAVPMDITPKHVGIASGLVNAGSAIAGIFSPIVFGFVVDHTGSWT
                     LPFAGSVGLLAIGIVMTFFMRPDIALDQGADPDDETRHGLKLADRLGH"
BASE COUNT          362 a          537 c          530 g          316 t
ORIGIN      
        1 ggcgtgtcgc tgttcgtgcg gcacgcgcgc ggcatggagc cgaccatctt cggcgaagcg
       61 gtgatgcgct atgcgcgcgt ggtgtttgaa gacctcgatg aactgcgcga ggaactggcc
      121 gcgattgagg ccggtgatat cggcaaggtg cgcattggcg ccgtgatggc gcccgcgccc
      181 gagctgctga cgcaagctat tgtgtcgttg aaagaagcgc atccgcgctt gcagatctcc
      241 gtgcagatcg ataccagcga cgtgctcgtg caagcgttgc agcaagatca gctcgatatt
      301 gtgatcgggc ggattcccga tggttttccc gcgctcgatc tgagttttga gaccttgtcg
      361 gaagaggctt tatcgattgt cgctcggccg gatcatcctg ccgcgaaggc cacggcgcgg
      421 cccaagcttg cggagctggc gcagtatccg tggatcgtac agccgcatcc gagcccgatg
      481 cgccagatca tcgaccagac ctttcgcgag tcgcgcgtag caccacccat cagtactgtc
      541 gagacctcgt cgatcctcac cacgctatcg ctcttgcgcg actcggacat gctcgctgtg
      601 ttgccgagtt cggtcgcaca gtactacgtt gcgctgaaga ccatgaccgc actgcccacg
      661 ccactgcgtg gaaggctcgc accgtatggg ctgattcttc gaaagaaccg ccggatcagg
      721 ccggcgactc aacttgtgat cgatgtgatc cggagtggcg gagcggttgc tcagtgacca
      781 aggcggtccg ccagcttgag cccgtggcgt gtttcatcgt cgggatctgc accttgatcc
      841 agcgctatat ccgggcgcat gaagaacgtc atcactatgc cgatagcaag caggccgact
      901 gaaccggcga acggcaacgt ccagcttccc gtgtgatcca ctacgaagcc aaatacgatc
      961 ggcgagaaga tgcccgctat tgcggagccc gcattcacca ggccgctcgc aatgccgacg
     1021 tgcttgggcg taatgtccat cggcaccgcc cagatgggtc cgatcgtcat ctccaggaag
     1081 aagaacgaca ggctcatgga cgcagccatg accggcaacg acttcacgaa cagcaccggc
     1141 gcgaggaaca cgagcgcacc aagaaacgcg ccgatgatga cgttacgccg tgccgccacc
     1201 acgttgcccg tgcgcttcag gatgcggtcg ctcagcacgc cgcccgccgt attgccgacc
     1261 acgcccgaga ggaatacgcc cgccgaaaag agcgcggagc ttttcaggtc gaggccacgg
     1321 ccatgcatga aaaacgtcgg taaccatgtg aagaacaacc agccggtcca gccatagcag
     1381 aagtagacaa tcatcgtcgg gccgatgcgt ttgagcagcc gccgccacgg cactggcgca
     1441 tgagtctttt caaccacgac cttgccttca ggcggcaaac cgagtgcttc ttctgcagtc
     1501 atgtgccgat gcttgcgtgg gttatcggtg aaataccacg catagacgga tacccagatc
     1561 gcagtcagca caccgaccag gatgaacgac gcgcgccatg atgcgaatgc cacaagcaac
     1621 gcgatcagcg gcggcgtcag tgcgttgccg aggcgtgaga acgagtgcgt gagaccttgc
     1681 acgaagccgc gcttctcagc cgggaaccag ttcgtcaatg cacgcgcttg agccggcagc
     1741 gctgc
//
LOCUS       DATGBK010001279         2030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_316078, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001279 DATGBK010000000
VERSION     DATGBK010001279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316078"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..1117)
                     /locus_tag="VKJ77_17900"
     CDS             complement(77..1117)
                     /locus_tag="VKJ77_17900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47196.1"
                     /translation="MKRSTFAASLTVAALAAPAFVRTASAADDVTVGTSSSSSDVPFF
                     IADKLGYFREQGLNVKLEPFDSAAKMVAPLGAGQLDVAAGAPSAGLYNAILQNIDLRI
                     IADKGSTPKGYGYLQLLVRADLIKSGKFKSYADLKGLKVAEPAQGTSTSSALNEALKR
                     GKLPYNAVEHVYLGFPQHIPAFINGSIDASMTTELSASLAVKSGAAVKFAGSDVFYPN
                     QQVAVLLYGGNFIQKRRDIGVKFMIAYIKAARYYNDALKDGKLRGRNAASVLDILTEY
                     TPVKDKATYEESTPNGNDPDGRVNVKSLEIDLAFFKDQGLVKGDVSIEKIHDGSFVEA
                     ALKSVGKYRRNA"
     gene            1228..>2030
                     /gene="pcaD"
                     /locus_tag="VKJ77_17905"
     CDS             1228..>2030
                     /gene="pcaD"
                     /locus_tag="VKJ77_17905"
                     /EC_number="3.1.1.24"
                     /inference="COORDINATES: protein motif:HMM:TIGR02427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047570 - 3-oxoadipate enol-lactonase
                     activity [Evidence IEA];
                     GO_process: GO:0042952 - beta-ketoadipate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoadipate enol-lactonase"
                     /protein_id="HMC47197.1"
                     /translation="MPFVRADDVTVHYDLSGPAGAPVVLFANSLGTNMNVWDAQVPAF
                     IKTYRVLRYDKRGHGLTDETAPGTFTLDRLADDVRALLDALAIDRVSYVGLSIGGIIG
                     QRFAAKYPERLDALVLCATASHIGPRETWDTRIAAILRDGMSGLVDGVMARWFTPATH
                     AQHPDIIAGFGNMLRRTPAAAYAACCGVIRDADESADDARITAPTLIVSGADDVVTPP
                     ASATQMHETIARAQMIVLEKAAHILCVEQPAAFNAAVLAFLGAHINAEAT"
BASE COUNT          388 a          619 c          599 g          424 t
ORIGIN      
        1 tcaccgagcg ccgtaaagta gcggtcgcgt aagcgaaacg ttttctcgac gtgctcgaag
       61 cggatcttga ccggattcat gcgttgcggc ggtatttccc aaccgacttc agggcggcct
      121 cgacaaacga accatcgtga attttttcga tcgagacgtc gcccttcacc agaccctgat
      181 ctttgaagaa cgcgaggtcg atttccaagc tcttcacatt cacgcgaccg tcgggatcgt
      241 tgccgttggg cgtactctct tcatacgtcg ccttatcttt taccggcgtg tactcggtga
      301 gaatatctaa gacgctggcg gcatttcggc cacgcagctt tccatctttg agcgcgtcgt
      361 tgtagtaacg cgccgcctta atataggcga tcataaattt cacgccgata tcgcgtcgct
      421 tttggatgaa gttcccgccg tacaacaaca ccgcgacttg ctggttggga taaaacacgt
      481 cggagccggc gaacttcacc gccgccccgc tcttaacggc gagcgaggcg gatagctcgg
      541 tcgtcatgct cgcgtcgatg ctgccgttga taaaagccgg aatgtgctgc ggaaatccca
      601 ggtacacgtg ctcgacggcg ttgtagggca gtttgccgcg cttgagcgct tcgttcagcg
      661 ccgacgaagt cgaggtgcct tgtgccggct cggcaacttt gagacctttg agatcggcat
      721 acgatttgaa ttttccactc ttgattagat ccgcgcggac gagcagctgc aggtagccgt
      781 atccctttgg cgtcgagcct ttgtcggcga tgatgcgcag atcgatattc tgcaggatcg
      841 cattgtataa accggccgag ggcgcgcccg ccgcgacatc gagctgaccc gcgccgagcg
      901 gcgcgaccat ctttgccgcg gaatcgaacg gttcgagctt gacgttcagg ccttgttctc
      961 tgaagtagcc gagcttatcg gcaatgaaga acgggacgtc gctgctactg ctgctcgtgc
     1021 cgaccgtcac gtcgtccgcc gcgcttgcgg tgcgcacgaa cgcgggagcg gcgagggcgg
     1081 caacggtcag cgatgcggca aaggtgctac gtttcatgca tcgtcatccg cgtacaatgg
     1141 ggtcccatcc tcccgaaagc gcgcccgttc ggctcgcgca gggtttgggc gcctgtagcg
     1201 aacctcatga cggtcaggag gaagcatatg ccattcgttc gcgccgatga cgtgacggtt
     1261 cactacgatc tgagcggacc cgccggcgca cccgtcgtcc ttttcgccaa ttcgctgggc
     1321 acgaacatga acgtttggga tgcacaagtc ccggcattta taaagacgta ccgcgtgctg
     1381 cgctacgata agcgcggtca cggtcttacc gatgaaaccg cgcccggcac atttacactc
     1441 gaccggctcg cggacgatgt ccgcgccctg cttgatgcgc tcgcgatcga tcgcgttagc
     1501 tacgtcggcc tttccatcgg cgggatcatc ggccagcgct ttgccgcgaa atatcccgaa
     1561 cgcctggacg cgctcgtgct gtgcgcgacg gcaagtcaca tcggaccgcg tgagacatgg
     1621 gatacgcgca tcgccgcaat tctacgcgac ggtatgagcg gacttgtcga cggcgtgatg
     1681 gcgcgctggt ttacgcccgc gacgcacgcg cagcaccccg acatcattgc gggcttcggc
     1741 aacatgttgc gccgcacgcc ggccgccgca tacgccgcat gttgcggcgt cattcgggat
     1801 gcggacgaaa gcgcggacga cgcgcgcatt accgcgccga ccctcatcgt ttccggagcg
     1861 gatgacgtcg ttacgccgcc cgcatccgca acgcaaatgc acgagacaat cgcgagggcg
     1921 cagatgattg tgctcgaaaa agccgcacac attctttgcg tcgagcaacc ggcagcattc
     1981 aatgccgcgg tgctcgcgtt tctcggcgca catattaacg cagaagctac
//
LOCUS       DATGBK010001280         2681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_270413, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001280 DATGBK010000000
VERSION     DATGBK010001280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270413"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VKJ77_17910"
     CDS             complement(<1..183)
                     /locus_tag="VKJ77_17910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HMC47198.1"
                     /translation="MTPASPTDLALTAAAERDRRFMALAQAAAEQARELGEVPVGAVL
                     VRGDEVIATGFNHPIGA"
     gene            complement(180..590)
                     /locus_tag="VKJ77_17915"
     CDS             complement(180..590)
                     /locus_tag="VKJ77_17915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family domain-containing protein"
                     /protein_id="HMC47199.1"
                     /translation="MKLLDALVEQRISAAAARGEFDNLPGAGEPLALDDDALVPEEVR
                     VANRIMKNAGFVPPAVEHLRALRDLQNESGSSEDPATRRKLQAKMLALDMALESLRGS
                     STVVPLEYRRRIAERLCERLSENDRNAGSEATGK"
     gene            complement(854..1618)
                     /locus_tag="VKJ77_17920"
     CDS             complement(854..1618)
                     /locus_tag="VKJ77_17920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014899026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47200.1"
                     /translation="MIEANEVQVRFKTKTGFADAVRSATFHVGEGEVFGLVGESGSGK
                     STVLRALTGLVPIASGSMRIGRHTLGKHIDRAFRREVQMVFQDPYGSLYPRFTVDQTL
                     REPLTINGMDRHDARILDALREVGLGPAFRFRYAHQLSGGQRQRVAIARALIVEPRVL
                     LLDEPTSALDVSVQAEILNLLRRLHRERHLTMILVSHNMAVVGFLCQRVAVMRDGEIV
                     EQLPIEAIREQNVAHEYTRSLLLATEGYRRKAIDPA"
     gene            complement(1615..2475)
                     /locus_tag="VKJ77_17925"
     CDS             complement(1615..2475)
                     /locus_tag="VKJ77_17925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47201.1"
                     /translation="MQADTLCEIDNLRIAFEAHDGTLTEAVRGISLTLARGERLGIVG
                     ESGSGKSLTGRALLGLLPASAHWSADAMRLDNHNLLAMRPKERRRLCGTQMSMILQDP
                     KYSLNPVMTVAQQMREAFGRQSPKLNAKAMRERIVAALEAVHIRDPQRVADAYPHELS
                     GGMGQRVMIAMMVSSGPRLLIADEPTSALDVLVSMQVLSVLDEMIAKHDTGLIFISHD
                     LPLVMSFCDRVLVMVGGRVVETCAARDLAHAQHPYTRGLLAASPPLRNPPDELPVLQR
                     DPAWFAEVAP"
     gene            complement(2477..>2681)
                     /locus_tag="VKJ77_17930"
     CDS             complement(2477..>2681)
                     /locus_tag="VKJ77_17930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014899028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D,D-dipeptide ABC transporter permease"
                     /protein_id="HMC47202.1"
                     /translation="VAGLGFLGLGAQPPSPEWGFMVASGRGVLLDAWWVATIPGIAIL
                     LVSLAFNLLGDGLRDVFDPRQGS"
BASE COUNT          503 a          872 c          824 g          482 t
ORIGIN      
        1 agcgccgatc ggatgattga agccggtcgc aatgacttca tcgccgcgaa ccagaactgc
       61 gccgaccggt acttcgccca actcacgcgc ctgctccgcg gcggcttgcg cgagcgccat
      121 gaaacggcgg tcgcgttccg cggcagccgt caaggcgaga tcggttgggg atgcgggagt
      181 cactttccgg tggcctcgga ccctgcattc ctgtcgttct ccgagagccg ctcgcacaga
      241 cgctcagcaa tgcgccgccg gtattccagc ggcacgacgg tgctgctgcc gcgcaaggat
      301 tccagcgcca tgtcgagcgc cagcatcttc gcttgcagct tgcggcgggt tgccggatct
      361 tcgctgctgc cgctttcgtt ctgcagatcc cgaagcgcgc gcaaatgttc gacagcaggc
      421 ggcacgaaac cggcattttt cataatgcgg ttggcaacgc ggacttcttc ggggaccagg
      481 gcgtcgtcgt cgagcgcgag aggctcgccc gcgccgggca gattgtcgaa ctcgccgcgc
      541 gcggcggcgg ccgaaattcg ctgttcgacc agggcatcta gcagtttcat cggcgttttt
      601 aggtgccggc aaccggcgtg tcgaacgttt gacgacgaac gttatcgagc agcaggatca
      661 agccggactg tcacgttttg agggttgcgc ttcgcggctt cattcacgct caatgagccg
      721 ccggctgcgt gggaagccgg gtgagcgatc ccggcgcaac gcgcttcggg gatgcctact
      781 accaaattgg tattctatca ggcggcctgc gcaggggcgg ttcgcgctcg gccgcgcaca
      841 ttacgaagct gggctaggcc ggatcgatag ccttgcgtcg atacccttct gtggcaagca
      901 acaagcttcg cgtgtattca tgcgccacgt tttgctcgcg gatggcctcg atgggaagct
      961 gctccacaat ctcgccatcg cgcatcaccg cgacccgctg gcataaaaat ccgactaccg
     1021 ccatgttgtg actgacgagg atcattgtca ggtggcgttc acgatgcaaa cgacgcagca
     1081 ggttcaggat ctcagcctgc acggatacgt cgagcgcgga agtcggctcg tcgagcagca
     1141 gcacgcgcgg ctccacgatc aacgccctgg caatcgccac gcgctggcgt tgcccgcccg
     1201 atagttgatg cgcataccgg aaccggaacg cgggcccaag gccgacttcc cgcaatgcgt
     1261 cgagaatgcg ggcatcgtgg cggtccatgc cgttaatggt gagcggctcc cgcagcgtct
     1321 ggtccacggt gaagcgcgga tacagcgatc cgtacgggtc ctggaacacc atctgcactt
     1381 cgcgcctgaa cgcacgatcg atgtgtttgc cgagcgtatg gcgaccaatc cgcatcgacc
     1441 cgctggcgat gggtacgagc cccgtcagtg cgcgaagcac ggtggatttg ccagaacctg
     1501 attcgccgac aagcccgaac acctcccctt cgccgacatg aaacgtcgcc gagcgaactg
     1561 catcggcgaa accggttttc gttttgaagc gtacctgtac ctcgtttgct tcgatcatgg
     1621 cgcgacctcg gcgaaccatg cgggatcgcg ttgcagaacc ggcagttcgt ccggcggatt
     1681 gcgcagcggc ggactcgcgg ccagcaaacc gcgcgtgtac ggatgctgcg cgtgagcaag
     1741 atcgcgtgcc gcgcacgtct cgactacgcg tccgccaacc atcaccagca cgcggtcgca
     1801 aaacgacatc accagcggca ggtcgtggct gatgaagatc aacccggtgt cgtgcttcgc
     1861 gatcatctcg tccagcaccg acaacacctg catggagacg agcacatcga gcgcgctggt
     1921 cggttcatcg gcgatcagca accgggggcc cgacgacacc atcatggcaa tcatcacgcg
     1981 ctggcccatg ccgcccgaca actcgtgcgg ataggcgtcg gcgactcgtt gcggatcgcg
     2041 aatatgcact gcctccagcg cagcaacaat ccgttcccgc atggctttcg cattcagctt
     2101 cggcgactgc ctcccgaacg cctcgcgcat ctgctgcgcg actgtcatca ccgggttcag
     2161 tgaatacttc gggtcctgca ggatcatgct catctgcgtg ccgcaaaggc gccgccgctc
     2221 cttcgggcgc atggcgagaa ggttgtggtt atcgaggcgc atggcgtcgg ccgaccagtg
     2281 tgccgatgct ggcagcagcc cgagcaatgc gcgtccggtc agcgatttcc cagaccctga
     2341 ttcgccgacg atacccagcc gctcgcccct cgcaagcgtc agggaaatgc cgcgcaccgc
     2401 ttcggtcagc gtgccgtcgt gggcctcgaa cgcaatgcgc aggttatcga tctcacagag
     2461 ggtatcggct tgcatgtcag ctaccttgac ggggatcgaa gacatcgcgc agaccatcgc
     2521 cgagcaggtt gaacgcaaga ctgacgagca ggatggcgat gccgggaatg gttgcgaccc
     2581 accacgcgtc gagcaacacg ccccgccccg acgccaccat aaaaccccac tccggacttg
     2641 gcggctgcgc accgagcccg agaaaaccga gtcccgcaac t
//
LOCUS       DATGBK010001281         2011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_200824, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001281 DATGBK010000000
VERSION     DATGBK010001281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200824"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1015
                     /locus_tag="VKJ77_17935"
     CDS             <1..1015
                     /locus_tag="VKJ77_17935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006025034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47203.1"
                     /translation="SPTFVSVFAAEVLHGFASCMLVPAMAAISLALVSRADLGNRLGR
                     NARWASIGSALTAALMGLFGEYLSLRSVFFLTAALALPALFALNMIHHEMAPVVPRMK
                     KAAAKAGASIAQAVSAAGADRPESLRDLLRDPRLLTFAACVVLFHLSNAAMLNLAAGE
                     VTAHMGDNVQLVIAACIIVPQFIVAGLSPWVGRQAQSWGRRPVLIIGFSALPLRALLF
                     AAASSASSPYLLVPVQMLDGISAAVFGVMLPLIAADVAGGKGRYNLCIGFFGLAAGVG
                     ATLSTAIAGFVADKFGVNTSFFGLAAAGALAVALVWLAMPETRDAAANDEAAKAKEAT
                     PAA"
     gene            complement(1062..>2011)
                     /locus_tag="VKJ77_17940"
     CDS             complement(1062..>2011)
                     /locus_tag="VKJ77_17940"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HMC47204.1"
                     /translation="ADVVLENFKTGTMESMGLGYEALSALNPRLVYGNITGYGRTGPA
                     ALWPGFDQVAQGYAGIMSLTGMPDAGPTRVGIAIGDMTAGMWTAMGVLAALLSRQQTG
                     RGQRVESSLLSGLVAMLGVQGQRYLSAGEIPEPTGNHHPVIAPYGVFEAQDGALNLAP
                     GTPDMWVKLCELLGLEHIMSDPRFVTNEQRMQHREVLKEVIDTKLRTRTRAEWTADLR
                     RLGIPAGPINNLADVFADPQVVHCGLVEEVAHGTIGQLKQVASAIRMSEMTEGSVRMP
                     PPMLGEHTIDVLSEYGFSDEQIDGWLTSQVVLQHEYALG"
BASE COUNT          320 a          644 c          647 g          400 t
ORIGIN      
        1 gagcccgacc ttcgtctccg tgttcgcggc cgaagtgctg cacggctttg cgagctgcat
       61 gcttgtgccc gccatggccg cgatctcgct cgcgctggtc tcgcgcgccg atctcggcaa
      121 ccggctcggc cgcaatgcgc gctgggcgtc gatcggcagc gcgctcacgg cggcgttgat
      181 gggtctgttc ggcgagtacc tgtcgctgcg ctcggtgttc tttttgaccg cggcgctggc
      241 gttgcccgcg ctcttcgcgc tcaacatgat ccatcacgag atggcacccg tcgttccgcg
      301 catgaaaaag gctgcggcaa aagcgggggc aagcatcgcg caagcggtga gcgcggccgg
      361 ggccgatcgg cctgaaagcc tgcgtgatct gctgcgtgat ccgaggcttt tgaccttcgc
      421 ggcgtgcgtg gtgctgttcc acttgtcgaa tgcggccatg ctgaacctcg ccgccggtga
      481 agtcacggcg cacatgggcg acaacgttca actcgtgatc gcggcgtgca ttatcgtgcc
      541 gcagttcatc gtggcggggt tgtcgccatg ggtcgggcgg caggcgcaaa gctgggggcg
      601 ccggccggtg ctgatcatcg gcttctcggc gctgccgtta cgcgcgctgc tgttcgccgc
      661 cgcgagcagt gctagcagcc cttacctgct ggtgccggtg cagatgctcg acggtatcag
      721 cgctgccgtg ttcggcgtga tgctgccgct gattgccgcc gacgtggccg gcggcaaggg
      781 ccggtacaac ttgtgtatcg gattctttgg gctggcggcg ggtgttggtg cgacgctgag
      841 tacggcgatc gccgggttcg tggcggacaa gttcggcgtg aacacaagct tcttcggact
      901 tgccgcagcc ggtgcgctgg ccgtagcgct ggtatggctc gccatgccgg agacccgcga
      961 tgccgccgcc aacgacgaag ccgccaaggc gaaagaagcg accccggcgg cttgacgaag
     1021 gttcaatgag cacgcggaac gcgctgggct tgcggataga ttcagcccag cgcgtactca
     1081 tgctgcaata cgacttgcga tgtcagccag ccatcgattt gctcgtctga aaagccgtat
     1141 tcactcagca cgtcgatcgt gtgttcgccc aacatgggtg gtggcatgcg aacggaacct
     1201 tcagtcatct cgctcatcct gatcgcgctc gccacctgct tcaactgacc tattgtgccg
     1261 tgtgcaactt cctcgaccag cccgcagtgc accacctgtg gatcggcgaa cacgtcggcg
     1321 aggttgttga tgggaccagc cggaataccg agccgtctca gatcagcagt ccactcggcg
     1381 cgcgtgcgcg tgcgcagttt tgtatcgatg acttctttta gcacctcccg atgctgcatg
     1441 cgctgctcgt tggtgacaaa acgcgggtcc gacatgatgt gctccagccc gagcagttcg
     1501 cagagcttga cccacatgtc cggcgtgccc ggcgccaggt tcagtgcgcc gtcctgcgcc
     1561 tcgaagaccc catacggcgc aatcaccgga tgatgattgc cagtcggctc gggtatttct
     1621 cccgcgctca gataacgctg gccctgcacg cccaacatgg cgaccagccc cgacaacaac
     1681 gaactttcga cgcgctggcc acgtcccgtt tgctgcctgg aaagcaatgc ggcaaggacg
     1741 cccatcgcgg tccacatgcc agcggtcatg tcgccgatcg ctatgcccac gcgcgtgggg
     1801 ccggcgtcgg gcatgcccgt gagactcatg atgcccgcgt acccttgcgc gacctgatcg
     1861 aaacctggcc acaacgcggc cggacccgtg cggccatagc ccgtgatgtt gccgtagacg
     1921 agccttgggt ttagcgccga tagcgcctcg taaccgagcc ccatgctttc catcgtgccg
     1981 gtcttgaagt tttcgaggac gacatcggcg g
//
LOCUS       DATGBK010001282         1502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_270509, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001282 DATGBK010000000
VERSION     DATGBK010001282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270509"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1221
                     /locus_tag="VKJ77_17945"
     CDS             <1..1221
                     /locus_tag="VKJ77_17945"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC47205.1"
                     /translation="QKAERRGQNAAALFLDLDRFKYINDTFGHVVGDELLSRVAQRLA
                     RVLRAGDTVARPGGDEFVIVLEELEDAERASDLAQRILREFAKPFNLSVGAQFIGASI
                     GIALYPHDGLTPNDLLRAADSAMYRAKARGGNDFQFFTPELHASALLQLELGNALRVA
                     VERRDVYVVYQPIQNTTDGRIVSVEALARWNRGDAPPVGPAEFVLIAEETGLIRELGE
                     SILRQACQQMAAWVTAGVPLESIAVNISTRQLAERGFVSRVAEILVASQLAPHRLELE
                     ITETAFVDGNDEAFAAITQLRQLGVRFAIDDFGTGYSSLAYLKRIPADTVKIDRSFIV
                     DMEAKTDRAIVEAVIMVARHLGKRVVAEGVETAEQLALLKHLECECAQGYLFSRPTDA
                     MSAERLIRASAVIS"
     gene            complement(1211..1360)
                     /locus_tag="VKJ77_17950"
     CDS             complement(1211..1360)
                     /locus_tag="VKJ77_17950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47206.1"
                     /translation="MERKTLYEDDLTEERQITPGEREDVAETESLDPSDDGVDGPEEP
                     VKPKK"
BASE COUNT          286 a          473 c          438 g          305 t
ORIGIN      
        1 caaaaagccg agcgacgtgg gcaaaacgcg gccgcgctgt ttctggacct cgatcgcttc
       61 aagtacatca acgatacgtt cggtcacgtc gtcggcgatg aattgttgtc gcgggtcgca
      121 cagcgcttag cgcgcgtgtt gcgcgccggc gatacggtcg cgcggcccgg tggtgacgaa
      181 tttgtgatcg tgctcgaaga actcgaagat gccgaacgtg cctcggacct cgcgcagcgc
      241 attttgcgcg agttcgccaa gccgttcaat ctctcggttg gggcacaatt tatcggcgcg
      301 agcatcggca tcgcgctcta cccgcatgac ggtcttaccc ccaacgatct gttacgtgcc
      361 gcggactccg cgatgtatcg cgcgaaagca cgcggcggta acgacttcca attcttcact
      421 cctgaactcc atgcgtccgc gctcttacag cttgagctcg gcaacgcgtt gcgcgtggcc
      481 gtcgagcggc gcgacgtgta cgtcgtctat cagcccattc agaatacgac cgacggccga
      541 atcgtgagcg tcgaagcgct cgcgcgctgg aatcgcggcg atgcgccgcc ggttggcccc
      601 gccgaattcg tgctgatcgc ggaagaaacc ggactcatcc gcgaactcgg cgagtcgatc
      661 ctacgccaag catgtcagca aatggcagcc tgggttaccg cgggcgtgcc gttagaatcg
      721 attgccgtca atatttcaac gcgtcaactc gccgaacgcg gctttgtgtc gcgcgttgca
      781 gaaattctgg ttgcatcgca actcgcgccg caccgtctcg aattggaaat cacggaaacg
      841 gccttcgtcg acgggaatga cgaagcgttt gcagcgatca cgcaactgcg ccagctcggc
      901 gtgcgcttcg ccatcgacga ttttggcacg ggctactcgt cgctcgccta tctcaaacgc
      961 atcccggccg acacggtcaa gatcgaccgc tcgtttatcg tcgacatgga agcgaagacc
     1021 gatcgcgcga tcgttgaagc cgtcatcatg gtcgcccgcc atctcggcaa gcgcgtcgtc
     1081 gccgaaggtg tcgaaacggc cgaacagctc gcgctcttga aacacctcga atgcgaatgc
     1141 gcgcaaggct atctcttcag ccggcccacc gatgccatga gcgcggaacg cctgatccgc
     1201 gcgtcggcgg ttatttctta ggtttcaccg gctcttcggg accgtcgacg ccatcgtcgg
     1261 acggatccag cgattccgtt tcggccacgt cttcacgctc gccgggcgtg atctgacgct
     1321 cctcggtaag gtcatcttcg tatagcgttt tacgttccat gacgcgttgc gtacccatcg
     1381 aaaacgggga cgaaccgcct acgggcctag gccatcaggt tcgtgcgatc cagatcgagt
     1441 tgaccggccg gaatgatctg gacgtccggg tacgccgcgc gaatttcatc tccaaaaatc
     1501 gc
//
LOCUS       DATGBK010001283         2520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_154077, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001283 DATGBK010000000
VERSION     DATGBK010001283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154077"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..251
                     /locus_tag="VKJ77_17955"
     CDS             <1..251
                     /locus_tag="VKJ77_17955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47207.1"
                     /translation="PRASVDHAATKPNGMSSAQGSCQERSGPSSHAASAHASPTQDRD
                     LKTTPSKYAKECILKIDCIVNIILSNELRANAPPETMF"
     gene            298..555
                     /locus_tag="VKJ77_17960"
     CDS             298..555
                     /locus_tag="VKJ77_17960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47208.1"
                     /translation="MNRAAQTTRLLGRRFGHSISNALLHVLPPNLSSWKLALYVIVFL
                     LPGGSFVVLGAAWFENRRTRKPVDPAPAKTPLLCRPKHCDA"
     gene            802..2373
                     /locus_tag="VKJ77_17965"
     CDS             802..2373
                     /locus_tag="VKJ77_17965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC47209.1"
                     /translation="MPFTRIPVFPRKSAIVLVVALTMAGCAVGPNYKRPDTAIPASYK
                     EAPEGWKVAQPSDRVDRGNWWAIYNDPQLNDLETRLNTSNQTIAQYAAAYRQARALVS
                     EARAAYFPTLGLSATGSRARSSSRSSGSVSSGGSINNAYDLSLDASWEPDLWGTVSRT
                     VGAQRAGEQSAAADLANARLSAQGTLAQTYFQLRSLDAQQKLLDDTVAAYQRTLQLTQ
                     NQYAQGTAARSDVIQAQTQLQSAQASAIDNGVARAQYVHAIAVLVGEPASTFSIASSP
                     LDATPPDVPLQLPSAILERRPDIASAERKAAQANEQIGVAIAAFFPTLTLSASGGFQS
                     SIFSQLLSAPSRFWTLGPDLAATIFDGGLRAAQTEAARASYDSAVATYRQSVLTAFQD
                     VEDNLASQRILANEIGIQQQAVASAQQALAIVTNQYKSGTVGFINVLTAQTTAFTAEQ
                     KLASIAGERMVSSVGLIKALGGGWDTAQMDQETGSAAAPVPASAVAVKGSSAALNPAP
                     GSSTVAAANAGTAKE"
BASE COUNT          491 a          823 c          759 g          447 t
ORIGIN      
        1 ggccgcgcgc atccgtcgac cacgccgcga ccaagccgaa tgggatgtcc tcggcacaag
       61 gctcatgcca ggaacgaagc ggcccgtcct cccatgcagc gtccgcccat gcctctccga
      121 ctcaagatcg cgacttaaaa acaacaccgt caaaatatgc taaggaatgc atcttgaaaa
      181 tcgattgcat agtcaatatt attctaagca acgagttacg cgcgaatgcg ccacccgaga
      241 ccatgttctg accgactgaa agcatcgaac cattcgatgc gtaaatggat ttacccgatg
      301 aaccgcgctg cccaaaccac ccgcctcctc ggccgacgct tcggccattc gataagtaac
      361 gccttgctgc acgtcctgcc gcctaatttg agctcatgga agctggcgct gtatgtgatc
      421 gtgttcttgc tgccgggtgg atcgtttgtc gtgctgggtg ccgcgtggtt cgaaaaccgg
      481 cgcacgcgca agcccgtcga tccggcgccc gccaagaccc cgttactctg ccgcccgaaa
      541 cactgcgacg cttgagaccc tcggccccgt tgctggcgcg cgtcgttatg caacctgggc
      601 aatgcctgcg cgttgcgtaa cgacccgtaa ccgaatccgc acggcgagta acacccagct
      661 tcctttcaaa ccgttaccct aacgcctgcc cgacgcccgc cctacgcgtg cgttcagtta
      721 ccatttcgga ccggttgcgc gaaacgcttc gcgccgcatt gcgttgaagc gcgcgcaacc
      781 tccgacagga atccagagca gatgccgttc acccgaatac ccgtctttcc tcgcaagtcc
      841 gctatcgttc tcgtagtcgc actgacaatg gccggttgtg ccgtcggtcc gaactacaaa
      901 cgccccgaca ccgccattcc cgcatcgtat aaagaggcac cggaaggctg gaaagtcgcg
      961 cagccttcgg accgggtgga tcgtggaaac tggtgggcga tttataacga cccgcagttg
     1021 aatgacctcg aaacgcggct gaacacgtcg aatcaaacta tcgctcaata cgcggcggct
     1081 taccggcagg cccgggcgct cgtctcggag gcgcgcgcgg catatttccc gaccttgggg
     1141 ttatcggcga cgggctcgcg ggcgcgttcc tccagccgct cgagcgggtc ggtttccagc
     1201 ggtggttcga tcaacaatgc ctacgacctt tccctcgatg catcgtggga accggatctg
     1261 tggggcaccg tcagccggac agtgggcgca cagcgcgcag gtgagcaaag cgccgcggcc
     1321 gatctcgcca acgcacggct ctcggcgcag ggcacgctcg cgcaaactta cttccagttg
     1381 cgttcgctgg acgcgcagca aaagctcctc gacgacaccg tcgctgccta tcagcgcacg
     1441 ctgcaactca cgcagaacca gtacgcgcaa ggcacggccg cccgctcgga cgtgatccag
     1501 gcgcagacgc aattgcaatc ggcacaggcg tcggctatcg ataacggcgt cgcccgcgcg
     1561 caatacgtac acgcgatcgc cgtgctggtc ggcgagccgg cgtcgacgtt ctccatcgcc
     1621 tcgtcgccgc tcgacgccac gccgcccgac gtgccgctgc aactgccgtc tgccatcctc
     1681 gaacggcggc ctgacatcgc gtcggccgag cgcaaggcgg cgcaggcgaa cgaacagatc
     1741 ggcgtggcaa ttgcggcgtt tttccccacg ctgaccttgt cggcaagcgg cggttttcaa
     1801 agctcaatat tctcgcaatt gctgagcgcg ccatcgcgct tctggacgct cgggccggat
     1861 ctcgcggcga ccattttcga tggcggcttg cgggccgccc agaccgaagc ggctcgcgcg
     1921 tcgtatgact cggcggtggc gacgtatcgg caatcggtgc tgaccgcgtt ccaggacgtc
     1981 gaggacaacc tggcgtcgca gagaattctc gcgaacgaga tcgggatcca gcagcaagcg
     2041 gtggcgtcgg cgcagcaggc gctggctatt gtcaccaatc agtacaagtc gggcacggtc
     2101 ggattcatca acgtgctcac cgcgcagacc acggcgttca ccgccgagca gaagctggcg
     2161 agtatcgctg gcgagcggat ggtgtcgtcg gtgggattga tcaaggcgct tggcggcggc
     2221 tgggacacgg cgcaaatgga tcaggaaacc ggcagtgcag cggcgccggt tcctgcaagc
     2281 gcggttgcgg tgaaagggtc gagcgctgcg ttgaatcccg cgccgggttc gtcgacggtt
     2341 gcagcagcga acgccggtac ggctaaagag taggacacgc cggggccagg atgccccggg
     2401 attttcatgc ccgtacaaag cgctgatagc ggcagcgaag cgcccggttc tatcgaacga
     2461 aggtcagctc gacggtatcc ggtcccgtat gccgtccgag caggttcaac aatcccgcca
//
LOCUS       DATGBK010001284         1792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_270520, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001284 DATGBK010000000
VERSION     DATGBK010001284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270520"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(18..1190)
                     /gene="urtC"
                     /locus_tag="VKJ77_17970"
     CDS             complement(18..1190)
                     /gene="urtC"
                     /locus_tag="VKJ77_17970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0033221 - ATPase-coupled urea
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015840 - urea transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtC"
                     /protein_id="HMC47210.1"
                     /translation="MNRVTDSPPAAAPSRLAALRDWLAYRGFGSFVLLALILLVVMPL
                     MLDVFRLNLVGKYLTYAFVAIGLVMAWGYAGVLSLGQGVFFGLGGYCMAMFLKLEASD
                     PVSTKIQSTPGIPDFMDWNQLKALPWFWKPFEHLPFAIAAVLIIPTALAFVIGFAMFK
                     RRVGGVYFAIITQAIALILSVLIIGQQGYTGGVNGITDLKTMLGWDIRPDSAKIILYF
                     VNAVLLLVAILFCRLVQTSKLGTLLLAMRDKEDRVRFSGYDVAMFKVFAFCLAALLSA
                     IGGAMFTLQVGFMSPSFVGIVPSVEMVIYAAVGGRMSLVGAVYGTLLVNFGRTYFSES
                     FPNLWLLLMAALYIGVVMAFPDGLAGLYESHVKPRLGSLLRRLSRSNRSRSTLGSP"
     gene            complement(1227..>1792)
                     /locus_tag="VKJ77_17975"
     CDS             complement(1227..>1792)
                     /locus_tag="VKJ77_17975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011875582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="urea ABC transporter permease subunit UrtB"
                     /protein_id="HMC47211.1"
                     /translation="MQQMFRSTFGPKEVSPTLPDWLMGSWSPAPGLDIPINGLFVMCL
                     AIVLTGGVLIAMYRSRWGLRVRATVNNRTMANAAGIDTKRTDRLTFAIGCGMAGVAGA
                     AFTTIGSTGPTSGSLYIVDSFLVVTFGGAASLLGTVASAFGIAQTQSISEFFLSGSSA
                     RVVTLLTVVLILMARPQGLFASKVRRV"
BASE COUNT          419 a          547 c          559 g          267 t
ORIGIN      
        1 gaagtcggta ttgctcatca cgggctcccg agggtggaac ggctgcggtt gcttctactg
       61 agccggcgca acaagctgcc caggcgcggt ttcacatgcg actcgtacag acccgcgagg
      121 ccatcgggaa aagccatcac cacgccgatg taaagcgccg ccatcagcag cagccagagg
      181 ttcggaaagc tctcggaaaa gtaggtccgc ccgaagttca cgagcagcgt gccgtacacc
      241 gcgccgacca gcgacatgcg cccgccgacg gccgcataga tcaccatctc caccgacggc
      301 acgatgccga cgaacgacgg cgacatgaac ccgacctgca gcgtgaacat cgcgccgccg
      361 atagcggaga gcagcgcggc aagacagaac gcaaagacct tgaacatggc gacgtcgtag
      421 ccggagaacc gcacgcggtc ttccttgtcg cgcatcgcga gcagcagcgt gccgagtttg
      481 cttgtctgta caagtcggca gaacaggatg gcgaccagca gaagtactgc gttgacgaag
      541 tacaggatga tcttcgcgga gtcgggacgg atgtcccagc cgagcatcgt cttcaggtcg
      601 gtgatgccgt tcacgccacc cgtatacccc tgctggccga tgatcagcac cgagagaatc
      661 aaggcaatgg cctgcgtgat gatcgcgaaa tacacgccgc ccacgcgccg cttgaacatc
      721 gcgaaaccga tcacgaaagc gagcgcggtt gggatgatca gcacggctgc aatcgcgaaa
      781 ggtaaatgct cgaagggctt ccagaaccac ggcagcgcct tgagttggtt ccagtccatg
      841 aagtcgggaa tgccgggtgt cgactggatt ttcgtgctga ctgggtccga tgcttcgagc
      901 ttcaggaaca tcgccatgca gtagccgccg agcccgaaaa acacgccttg gccgagactc
      961 agcacaccgg cgtatcccca cgccatgaca aggccaatag cgacgaatgc ataggtcagg
     1021 tacttgccga ccaggttgag gcggaacaca tcgagcatca gcggcatgac caccagcaaa
     1081 ataagtgcta gcagcacgaa gctgccgaag cccctgtaag ccagccagtc gcgcagcgct
     1141 gcgagtcgcg acggagcggc agcgggtggc gaatcggtaa cgcggttcat ggcgaactcc
     1201 ggtgagaggg ggcaggttca gcgcgctcag acacgccgca cctttgaagc gaaaagtccc
     1261 tgcgggcgtg ccatcaggat cagcacgacg gtgagcaacg taaccacacg agccgacgaa
     1321 ccagagagga agaactcgct gatcgactgg gtctgcgcaa tgccgaaggc ggaagcaacg
     1381 gtgccgagca aactggccgc accgccaaac gtgacaacga ggaacgagtc gacgatatac
     1441 agcgacccgc tagtcggacc cgttgagccg atggtcgtga acgccgcgcc ggcaactccg
     1501 gccatgccgc agccgatcgc gaacgtgagc cggtcagtgc gttttgtatc gatgccggcg
     1561 gcgttggcca tcgtccggtt gttgacggta gcgcgcaccc gcaagcccca gcgtgagcga
     1621 tacatcgcta tcagcacacc gcccgtcagc acaatcgcga ggcacatcac gaacaggccg
     1681 ttgatcggga tgtcgagacc gggtgcgggc gaccaagatc ccatcagcca gtcgggcaga
     1741 gtagggctga cctccttcgg gccgaaggtt gagcggaaca tctgctgcat cg
//
LOCUS       DATGBK010001285         2436 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_246814, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001285 DATGBK010000000
VERSION     DATGBK010001285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246814"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..444)
                     /locus_tag="VKJ77_17980"
     CDS             complement(<1..444)
                     /locus_tag="VKJ77_17980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HMC47212.1"
                     /translation="MHSKTSPSTSAAPSQIQWEEKGENHSALWHSESGIAPPKRVVIG
                     DDQMTADSAYRLACEGTAILWRGDFQNARQLLQAVARRIETRPKKSAKAKAKERSAAP
                     DAPPAAPPAPAEAFNLHRLAQSQRARTLGMLLLPLDAEYAIPLRRA"
     gene            827..2104
                     /locus_tag="VKJ77_17985"
     CDS             827..2104
                     /locus_tag="VKJ77_17985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HMC47213.1"
                     /translation="MNLRALSAVAAATLFASLLPSTSALADDAPAEHWVSAWGTALQA
                     IPQRADLPALYRAPEIGGRTVRQIVYPAIDGRHVRLRFSNVYGTAPLVIEGVQVARSV
                     SGGTAAIRVGTSRPVTFAGKAGVTIAPGGQMDSDPIAFDVAAHQPLAVSTYIAAGQKM
                     AAWHRVANQTNYVSTPGNHSSDTDAAAFRTRFTQFVWLTSVSVDATPARALVAIGDSI
                     TDGMRSTPNANRRWPDALARRLTQKGIDGTAVVNAGISGNRLLSGSPCYGDALLNRFD
                     RDALRQPGVRAVILLIGINDINFPAMPPHAGLDCDDPHTPVTADSLLRGYQRLIAQAH
                     QRGVRIYGATLTPASLPPERESIRTAVNDSIRSSHAFDGVIDFDQALRDPTHPDRLQK
                     RYDSGDHIHPSDAGYTAMSEAVPIDEMGLAKGR"
     gene            complement(2182..>2436)
                     /locus_tag="VKJ77_17990"
     CDS             complement(2182..>2436)
                     /locus_tag="VKJ77_17990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47214.1"
                     /translation="TLLSKTPSAHTYRLLVFKEHSHKPHDPNPQNPAAFASLLLQHRN
                     EIMKNLFLLVNKFVSVCFQTYRLWRPPVSLAALVAKRGDE"
BASE COUNT          467 a          738 c          751 g          480 t
ORIGIN      
        1 cgcgcgccgc agcggaatgg cgtattcggc gtccagcggc aacagcagca tgccgagcgt
       61 gcgcgcccgc tgcgactggg cgagccgatg caagttgaac gcctctgcag gagcgggggg
      121 cgcggccggc ggtgcatcgg gagcggcgct gcgttccttt gctttcgctt tggcggactt
      181 tttcggccgc gtttcgatac gccgtgcaac cgcctgcagc aactggcgtg cattttggaa
      241 atcgccgcgc cagagaattg ccgtgccttc gcaagccagc cgataggcgg agtcagctgt
      301 catctggtca tcgccgatca ccacgcgttt gggcggcgcg attccgcttt ccgagtgcca
      361 gagcgccgaa tggttttcgc ctttttcctc ccattggatc tgggagggcg cggcgctggt
      421 gctgggagaa gttttggaat gcatgctgaa taagtaccgg acaaagtgag aaccgcgagg
      481 cggaatgccg acattctgag ggcttttcac aaaatggtcc gattttcgac gacaaaagac
      541 atccggtgga tgcgcttggg aatccggcca cgggatttcg acgggcgcga aagcatgctc
      601 gattgcacat ttagtgtcga tggacgcagg cgctaattcg attgcgttac ggtgagttcg
      661 acatctccgg gtctccgaac aacgtccgcg cgccgagtcc ggagtccctg ccacaagcct
      721 gggccaaacc gtacatacat cgcaggaaat catccgccga actgtaagcg cctggtttgc
      781 ctgttcaggc acaatcgttt tttcctccca aaacacccat tccccgatga accttcgcgc
      841 cctttctgcc gttgccgccg cgacgctgtt tgcttccctg ctgccatcca ccagcgctct
      901 cgccgacgac gcaccggccg aacactgggt cagcgcctgg ggcacggcgt tacaggcaat
      961 tccgcagcgg gcggatttgc cggcgctgta tcgcgcgccg gagattggcg gccggacggt
     1021 tcggcaaatt gtgtatccgg ccatcgatgg ccggcacgtt cggctgcgct ttagcaatgt
     1081 gtatggcact gcgccgctgg tgatcgaggg cgtgcaagtg gcgcgctccg tgtccggcgg
     1141 cacggccgcg atccgagtgg gcactagccg tcctgtgacg ttcgccggca aggcgggcgt
     1201 gaccatcgcg ccgggtggcc agatggacag cgacccgatc gccttcgacg tcgccgccca
     1261 ccagccgctc gccgtcagca cctatatagc agcgggccaa aaaatggccg cgtggcatag
     1321 ggtggcgaac cagacgaatt acgtatcgac gccaggcaac cattcctccg ataccgacgc
     1381 cgccgcgttt cgcacccgct tcacgcaatt cgtatggctg acaagcgttt ccgtcgacgc
     1441 aacaccggcg cgggcgctgg tagccatcgg agactccatc accgacggca tgcgctccac
     1501 gccgaacgcg aaccgacgct ggccggacgc attggcacgc cggctgacgc aaaagggcat
     1561 cgacggcacc gcggtcgtga atgccggaat cagcggcaat cgcttgctga gcgggtcacc
     1621 gtgttacggc gatgcacttt tgaaccggtt cgaccgcgac gcgctgcgcc aacccggggt
     1681 gcgcgcggtg atcctgctga tcggcatcaa cgacatcaat ttccccgcga tgcccccgca
     1741 cgccggcctg gattgcgacg atccccatac tcctgtgacc gccgattcgc tgttgcgcgg
     1801 gtatcaacgg ctgattgcgc aggcgcacca gcgaggggtc cggatctacg gcgcaacctt
     1861 gacgccggcc tcgctgcctc cggagcgcga gtcgatcagg acggcagtga acgattcgat
     1921 ccgctcaagc catgcattcg atggcgtgat cgatttcgac caggcgctcc gagacccgac
     1981 ccatcccgac cgtctccaga aacgttatga cagcggcgac catatccatc ctagcgacgc
     2041 gggttataca gccatgtcgg aagccgttcc catcgacgaa atggggctgg cgaagggccg
     2101 ttgaaggggc gttgaacggc cgttaggact ttcccgaaaa tagtttgaag atgttcttgc
     2161 cttagtgggt gccatcgcct attattcgtc tcctcgtttc gcaacgaggg ccgctaaaga
     2221 aacaggtggc ctccaaagtc ggtaagtttg aaagcaaacg ctcacaaact tgttgacaag
     2281 gagaaaaaga ttcttcataa tctcgtttct gtgctgcaga agcagcgacg cgaaagcggc
     2341 agggttctga gggttgggat catgcggttt atgcgaatgt tctttaaaaa ctaacagccg
     2401 ataagtgtgg gcgcttggtg ttttgctgag aagcgt
//
LOCUS       DATGBK010001286         2237 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_246818, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001286 DATGBK010000000
VERSION     DATGBK010001286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246818"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..576)
                     /locus_tag="VKJ77_17995"
     CDS             complement(<1..576)
                     /locus_tag="VKJ77_17995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC47215.1"
                     /translation="MKYSNLVERLQGKRTAAWEIHHAAQQALQNGEDVIILSVGDPDF
                     ATPEVIVDRAVAALRAGDTHYAEVVGREPLRSAIARDHSRQTGTSVDAGHVIVVAGAQ
                     NGLFATSLCLCEAGDEIIVPEPMYLTYEASVRASGATLVPVAVDPARAFHLDCAALEA
                     AITPRTKAIFFATPCNPTGVVMPREDLERIAE"
     gene            complement(668..1624)
                     /locus_tag="VKJ77_18000"
     CDS             complement(668..1624)
                     /locus_tag="VKJ77_18000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013540647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47216.1"
                     /translation="MELADLRLVTMLARSESLSAAARVLNVTPSALSMRLKKLEKSLG
                     VTLATRDARHMSLTADGARLAREAQGLLSAIEALPDTFREQTAQLAGHIRIAAPFGFG
                     RVHIAPLLARFARANPGIRLQLDLLETPWPHSHAADIVIQIGTVRDSSWSARPLLANE
                     RWLCASPGYIAARGYPREPREILEHDCICIRENDEDVTLWRVRRRKSDAGRKPSSPTT
                     LRVTPTFTTNDGSVARRWAEEGLGLVLRSQWDVADAVAAGKLVRLLSEWDFGSAPVIA
                     LVPTRKGRSLRIQALLSYLAANLGAETAGERTKGRRAADTGA"
     gene            1702..>2237
                     /locus_tag="VKJ77_18005"
     CDS             1702..>2237
                     /locus_tag="VKJ77_18005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020722951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HMC47217.1"
                     /translation="MPNQSTPTYPKAVLFDLLTALLDSWTLWNRAAGSETAGRAWRAE
                     YLALTYGCGAYVPYEELVRQAALQVGLRESAARVLEAQWLQLAPWSGAQEVLRKLAPH
                     CRLAIVTNCSKRLGEQAAGLFDIDWDVIVTAESAGFYKPDPRPYQMALDRLKVDARDA
                     AFVAGSSYDMFGTAATGLR"
BASE COUNT          415 a          725 c          680 g          417 t
ORIGIN      
        1 ttcggcgatg cgctcaagat cttcacgcgg catcacaaca ccggtcgggt tgcacggcgt
       61 agcgaagaaa attgccttgg tacgcggcgt gatggccgcc tcgagcgctg cgcagtccag
      121 atgaaatgcc ctcgccggat cgacggccac aggcaccagc gtggcgcccg atgcccggac
      181 gctggcctcg taggtcaggt acatcggctc gggcacgatg atctcgtcgc ccgcttcgca
      241 caggcacaag gacgtagcga agagcccgtt ctgcgcgccc gcgaccacga tcacatggcc
      301 cgcatccacg ctcgtgccag tctggcgcga gtgatcccgt gcgatggccg aacgcaacgg
      361 ctcgcggcct accacttctg cgtaatgcgt gtcgccggcc cgtagcgctg ctaccgcacg
      421 atcgacaatc acttcgggtg tagcgaagtc cggatcgcca acgctcagga tgatgacgtc
      481 ctcgccgttc tgcaaagcct gctgcgccgc gtgatggatt tcccaggcag ccgtgcgctt
      541 gccctgcagg cgctccacga ggtttgaata cttcatgcgc tcactccctg aagcgtgacg
      601 atcgagccgg cacgcgatga tttttaattc tatcgcttca aatataaagt ccgccggaac
      661 gcaaacgtca agcgcctgtg tcggcggccc ttcgcccttt cgtcctctca ccggcagtct
      721 ccgcgccaag atttgccgcg agataactca acaacgcctg gatgcgcagc gaacgcccct
      781 tgcgcgtagg gaccagtgcg atgaccggcg cgctaccgaa atcccattcg ctcaagagcc
      841 tcaccagctt gcccgccgcg accgcatccg ccacatccca ttgcgagcgc agcacgagcc
      901 caaggccttc ttccgcccaa cggcgcgcga cgctgccatc gttcgtggtg aaggtcggcg
      961 tgacgcgcag cgtggttggc gacgacggtt tcctgcccgc gtccgacttg cgccggcgca
     1021 cacgccaaag cgtcacgtcc tcatcgtttt cgcgaatgca gatgcagtcg tgttcaagaa
     1081 tctcgcgcgg ctcgcgcgga taaccacgtg ccgcgatata acccggactc gcacataacc
     1141 agcgctcgtt cgcgagcaat ggccgagcgc tccaggacga gtcgcgaacg gtgccgatct
     1201 ggatcacgat atcggcggca tggctgtggg gccagggcgt ttcgagcaga tcgagttgca
     1261 ggcgaatccc cggattcgcg cgggcaaacc gcgccagtag cggtgcaata tgcacgcgtc
     1321 caaaaccgaa gggcgcggca atccgaatgt gtccggcaag ttgcgcggtt tgttcgcgga
     1381 aagtgtcagg gagtgcctcg atagcgctaa gcaacccttg cgcttcgcgc gccagtcttg
     1441 ctccgtccgc agtcagcgac atatgtcgtg catcgcgggt agcaagcgtt acacccagcg
     1501 acttttccag tttcttgagc cgcatggaga gtgccgacgg cgtcacgttc agcacgcgcg
     1561 ccgccgcgct caaggattcc gagcgcgcga gcatggtgac aagccgcagg tcagcgagtt
     1621 ccatcgttca attttgctta gggatagatg tgcctgaatt taaccacagc ttagggtttc
     1681 gttagtaaag tcgcttccac catgccaaat caatctaccc caacttatcc gaaagcggtg
     1741 ctgttcgacc tgctgaccgc cctgctcgat tcatggaccc tgtggaaccg tgcagccggc
     1801 agtgaaaccg ctggccgcgc gtggcgcgcg gaatacttgg cgctgaccta cggttgcggc
     1861 gcttacgttc cctatgagga actcgtacgc caggccgcgt tgcaggtcgg cttgcgtgaa
     1921 tcggccgccc gcgtgctgga agcgcaatgg ctgcaactcg cgccctggag cggcgcgcaa
     1981 gaagtgctgc gcaagctcgc accgcattgc cggctggcga tcgtgaccaa ctgctcgaag
     2041 cgtctcggcg agcaggccgc cggtctgttc gatatcgact gggacgtgat cgtgaccgct
     2101 gaaagcgcgg gcttctacaa acccgacccg cggccgtatc agatggcgct cgaccgtctg
     2161 aaggtcgacg cgagggacgc ggcgttcgtc gccggttcga gctacgacat gttcggtacg
     2221 gccgcgactg gcttgcg
//
LOCUS       DATGBK010001287         4163 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108017, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001287 DATGBK010000000
VERSION     DATGBK010001287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4163
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108017"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..955
                     /gene="nuoH"
                     /locus_tag="VKJ77_18010"
     CDS             <1..955
                     /gene="nuoH"
                     /locus_tag="VKJ77_18010"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009892166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HMC47218.1"
                     /translation="CVAYLILWERKLIGWMHVRLGPNRVGPLGLLQPIADVLKLLLKE
                     VIQPTQANRWIYLIAPIMTVVPAFAVWAVIPFQAKAVLGDVNAGLLYVMAISSVGVYG
                     VILAGWASNSKYAFLGAMRAAAQMVSYEISMGFALVVVLMVTGSLNMSAIVVSQEHGI
                     FAGWGINFLSWNWLPLLPMFVVYFVSGIAETNRHPFDVVEGESEIVAGHMIDYSGMAF
                     ALFFLAEYINMIVISAIATTLFLGGWSAPFGFLSFIPGIFWFVLKIFFLLSVFIWARA
                     TFPRYRYDQIMRLGWKIFLPVSVVWVVVVGFWIMSPLNIWK"
     gene            974..1462
                     /gene="nuoI"
                     /locus_tag="VKJ77_18015"
     CDS             974..1462
                     /gene="nuoI"
                     /locus_tag="VKJ77_18015"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011885529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HMC47219.1"
                     /translation="MNALQNFFKTFFLTELLKGLALTGGYLFQRKITVQFPEEKTPIS
                     PRFRGLHALRRYENGEERCIACKLCEAVCPALAITIESETRADNTRRTTRYDIDLTKC
                     IFCGFCEESCPVDSIVETHILEYHGEKRGDLYFTKDMLLAVGDRYETEIAAAKAADAP
                     YR"
     gene            1636..2337
                     /locus_tag="VKJ77_18020"
     CDS             1636..2337
                     /locus_tag="VKJ77_18020"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HMC47220.1"
                     /translation="MEFTTVLFYIFALLLVVSALKVITSRNPVASVLFLVLAFFNAAA
                     IWMLLEAEFLAILLVLVYVGAVMVLFLFVVMMLDINLDALHGDFKKFVPIASIVGAII
                     IIETALILWHGYGATVTPVRDAMLVNGVGSGVGPNAVMSNTQLIGKVIYTDYIFAFEI
                     AGLILLVAIIAAVSLTVREKKDSKRQRISDQVKVRAQDRVRIVKMKSETEAPDAATQP
                     PVTGNAGAGTVDNKG"
     gene            2352..2657
                     /gene="nuoK"
                     /locus_tag="VKJ77_18025"
     CDS             2352..2657
                     /gene="nuoK"
                     /locus_tag="VKJ77_18025"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HMC47221.1"
                     /translation="MLSLAHYLVLGAILFAISIVGIFLNRRNIIIILMAIELMLLAVN
                     TNFVAFSHYLGDIHGQIFVFFVLTVAAAEAAIGLAILVTLFRSLDTINVEDLDQLKG"
     gene            2675..>4163
                     /gene="nuoL"
                     /locus_tag="VKJ77_18030"
     CDS             2675..>4163
                     /gene="nuoL"
                     /locus_tag="VKJ77_18030"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013339862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HMC47222.1"
                     /translation="MSTTLNENLLLTIALAPLAGSLIAGLFGWKIGRKASHRITILGV
                     MISFVLSCFVLVDVMQGASFNATIYEWMTVGPLKMEIGFLVDSLTAMMMVIVTFVSLM
                     VHIYTIGYMADEEVGYERFFSYISLFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIG
                     FYYTRPTAIYANMKAFIVNRVGDFGFLLGIGLLLAFAGSLNYGDVFAHRTALAGMTFP
                     GTDWGLLTVACICLFIGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMV
                     TRMSPLFELSDSALSFVTVIGAITALFMGFLGVVQNDIKRVVAYSTLSQLGYMPVALG
                     VSAYPVAVFHLATHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLIG
                     SLALIGTPFFSGFYSKDSIIDAVKASHIAGSGFAYFAVVASVFVTALYSFRMYFLVFH
                     GEERFRGPKHPESPMGIAAAEAALHAHDSHGHDAHGHDDHGHGHAH"
BASE COUNT          733 a         1191 c         1253 g          986 t
ORIGIN      
        1 gtgcgtggcg tacctgattc tgtgggaacg caagctcatc ggctggatgc acgtgcgtct
       61 cggcccgaat cgcgtgggtc cgctcgggct gttgcagccg atcgccgacg tgctgaagct
      121 tttgctgaag gaagtgattc agccgacgca agccaaccgc tggatctacc tgatcgcgcc
      181 gatcatgacc gtggtgcccg cgttcgcggt gtgggcggtg atcccgttcc aggcgaaagc
      241 ggtgctcggc gacgtcaacg ccggtttgct ttacgtgatg gcaatttcgt ctgtcggcgt
      301 gtacggcgtg attctcgccg gttgggcgtc gaactcgaag tacgcgttcc ttggcgcaat
      361 gcgcgcggca gcgcagatgg tgtcgtacga aatctcgatg ggcttcgcgc tcgtcgtcgt
      421 gctgatggtc acgggcagcc tgaatatgtc ggccatcgtg gtgtcgcagg aacatggcat
      481 cttcgcaggc tggggcatca acttcctctc gtggaactgg ttgccgctgc tgcccatgtt
      541 cgtcgtgtac ttcgtgtcgg gcattgctga aacgaaccgt cacccgttcg acgtggtgga
      601 aggcgagtcg gagattgtcg cgggccacat gatcgattat tcgggcatgg cgttcgcgct
      661 gttcttcctc gccgaataca tcaacatgat cgtgatctcg gcgatcgcca ccacgctgtt
      721 cctcggcggc tggagtgcac cgtttggttt cctgtccttc atcccgggca ttttctggtt
      781 cgtgctgaag atcttcttcc tgctgtcggt gttcatctgg gcccgtgcga cgttcccgcg
      841 ttatcgctac gaccagatca tgcgtctcgg ctggaaaatc tttctgccgg tgtcggtggt
      901 gtgggtggtc gtggtcgggt tctggatcat gtcgccgctg aacatctgga aataatgggc
      961 ggatgaaata accatgaacg cactacagaa tttctttaaa acgtttttcc tgaccgagtt
     1021 gctgaagggt ctggcgctga caggcggtta tctgttccag cgcaagatca cggttcagtt
     1081 cccggaagag aagacgccta tttctccgcg tttccgtggc ctgcacgcat tgcgccgata
     1141 cgaaaatggc gaggagcgct gcatcgcgtg caagctgtgc gaggctgtgt gccccgcgct
     1201 cgccatcacg atcgaatcgg aaacgcgtgc cgacaacaca cgccgtacca cgcgttacga
     1261 catcgacctg accaagtgca tcttctgcgg tttttgcgaa gagagctgcc cggttgattc
     1321 gatcgtcgaa acgcacatcc tcgagtatca cggcgagaag cgcggcgacc tgtatttcac
     1381 gaaggacatg ctgctcgcag tgggcgaccg ttatgaaacg gagattgctg ctgcgaaggc
     1441 agccgatgcg ccctatcggt aaaacgcggt aaagcgaagc ggggcgcagc acgttgccgt
     1501 gccccttgct gttcctgcat ttgaattgac ctgctgttcc ggcccgcgcg ccaaggttgg
     1561 tggttgtgtt cttgaaaaaa acgcaacccg gcgtgcttgt gtcaaaacac aaagcctaac
     1621 gatgaaccgg taatcatgga attcacgacc gtactgtttt acatcttcgc gctgctgctg
     1681 gttgtctcgg cgctgaaggt gatcacttcg cgcaatccgg tggcatccgt gctgttcctc
     1741 gtgctcgcgt tcttcaacgc ggccgcgatc tggatgctgc ttgaagccga attcctcgcc
     1801 attctgctgg ttctcgtcta cgtcggcgcg gtcatggtgc tgttcctgtt cgtggtgatg
     1861 atgctggaca tcaacctcga cgcgctgcat ggcgacttca agaagtttgt gcctatagcg
     1921 agcatcgtgg gcgcgatcat catcatagaa accgcgctga ttctttggca cggttacggc
     1981 gcgacggtta cgcccgtgcg cgacgcgatg ttggtcaacg gggtgggttc cggcgtgggc
     2041 ccgaacgcgg tgatgtcgaa cacgcagttg atcggcaagg ttatctacac cgactacatc
     2101 ttcgcgtttg aaatcgccgg cctgatcctg ctggtggcga tcatcgcggc cgtctcgctg
     2161 accgttcgcg agaagaagga cagcaagcgc cagcgcatca gcgaccaggt caaggtacgt
     2221 gcgcaagatc gcgtgcggat cgtgaagatg aagtccgaaa ctgaagcgcc ggatgccgcg
     2281 acccaaccgc ctgtgaccgg caacgccggc gccggcacgg tcgacaacaa aggctgagga
     2341 gaaaaacaac catgttgagt cttgcccatt acctcgtgct tggcgcgatc ctgttcgcga
     2401 tcagcatcgt cggcattttt ctgaatcgac gcaacatcat catcatcctg atggcaatcg
     2461 aactgatgct gttggcggtc aacacgaact tcgtcgcctt ctcgcattat ctcggcgaca
     2521 tccacggaca gatcttcgtg ttcttcgtgc tgacggtcgc ggcggcggaa gccgcaatcg
     2581 gcctcgctat cctggtcaca ttgttccgca gtctcgacac gatcaacgtc gaagacctcg
     2641 atcagctcaa aggttaattt caggcaagac agatatgtcc acgacactca atgaaaacct
     2701 tctgctcacg attgcgctgg cgccacttgc cggttcgctg atcgccggcc tgtttggctg
     2761 gaagatcggg cgcaaggctt cgcaccgcat cacgatcctc ggcgtgatga tctcgttcgt
     2821 gctctcctgc tttgtcctgg tggacgtgat gcagggcgcg agcttcaacg cgaccatcta
     2881 cgaatggatg acggtcggtc cgctgaagat ggagatcggc ttcctggtcg actcgctcac
     2941 cgcgatgatg atggtgatcg tcaccttcgt ctcgctgatg gtgcacatct acacgatcgg
     3001 ttacatggcc gatgaagagg tgggctacga gcgtttcttc tcgtacatct ccctcttcac
     3061 gttctccatg ctgatgctcg tgatgagcaa caacttcctg cagttgttct tcggctggga
     3121 agcggtgggt ctcgtgtcgt acctgctgat cggcttctac tacacccgtc cgacggccat
     3181 ctacgcgaac atgaaggcgt tcatcgtgaa ccgcgtgggc gacttcgggt tcctgctcgg
     3241 cattggcttg ttgctggcgt ttgcgggttc gctgaactac ggcgatgtgt tcgctcaccg
     3301 taccgcgctg gccggcatga cgttcccggg caccgactgg ggtctgctga ccgttgcctg
     3361 tatctgcctg ttcatcggcg cgatgggtaa gtcggcgcag ttcccgctgc acgtgtggct
     3421 accggactcc atggaaggcc cgacgcctat ctcggcgctg atccacgcgg caaccatggt
     3481 gacggccggt attttcatgg tcacgcggat gtcgccgctc ttcgaattgt cggattccgc
     3541 gttgtctttc gtgacggtga tcggcgcgat cacggcgctg ttcatgggct tcctgggtgt
     3601 ggtgcagaac gacatcaagc gcgtggtagc ttactcaacg ctctcgcagc tcggttacat
     3661 gccggtggcg ctgggcgtct ccgcttaccc ggtggccgtg tttcacctgg ctacgcatgc
     3721 attcttcaag gcactgctgt tcctcggcgc gggttcggtg atcatcggca tgcaccacga
     3781 ccaggacatg cgcaacatgg gcggcctgcg taagtacatg ccgatcacgt ggatcacgtc
     3841 gctgataggt tcgctggcgc tgattggtac gccgttcttc tcgggcttct actcgaagga
     3901 ttcgatcatc gatgccgtga aggcgtcgca catcgccggc tcaggtttcg cttatttcgc
     3961 ggtggtggca agcgtgttcg tcacggcgct gtactcgttc cgcatgtact tcctcgtgtt
     4021 ccacggcgag gagcgtttcc gcggcccgaa gcatccggaa agcccgatgg ggattgcagc
     4081 ggcggaagct gcactgcacg ctcacgattc gcacggacat gacgctcacg gtcacgacga
     4141 tcatggtcac ggccacgcgc acg
//
LOCUS       DATGBK010001288         3129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_200935, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001288 DATGBK010000000
VERSION     DATGBK010001288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200935"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..459)
                     /gene="narH"
                     /locus_tag="VKJ77_18035"
     CDS             complement(<1..459)
                     /gene="narH"
                     /locus_tag="VKJ77_18035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010810870.1"
                     /note="with NarGJI catalyzes the reduction of nitrate; the
                     beta subunit is an iron sulfur cluster containing electron
                     transfer subunit; one of 3 nitrate reductases in E. coli
                     and in E. coli is expressed when nitrate levels are high;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HMC47223.1"
                     /translation="MKIRAQVAMVLNLDKCIGCHTCSVTCKNVWTSRDGVEYAWFNNV
                     ETKPGIGYPKEWQNQKKWRGGWTRDASGKLHPRQGGKLKVLVNLFANPNLPAIDDYYE
                     PFTFDYEHLQKARLSETPPTARPVSVITGKKMEKIEWGPNWEDDLGGEFAS"
     gene            complement(456..3129)
                     /locus_tag="VKJ77_18040"
                     /pseudo
     CDS             complement(456..3129)
                     /locus_tag="VKJ77_18040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008643819.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0009325 - nitrate reductase complex
                     [Evidence IEA];
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
BASE COUNT          543 a          958 c          917 g          711 t
ORIGIN      
        1 cgaagcaaac tcgccgccca ggtcatcttc ccagttcggg ccccattcga tcttttccat
       61 cttcttgccc gtgatgacgg acaccggcct tgcggtcggc ggcgtctcgg acaggcgcgc
      121 cttttgcaga tgctcgtaat cgaacgtgaa aggctcgtag tagtcgtcga tagctggcag
      181 gttcgggttc gcgaacaggt tcacgaggac cttcagcttg ccgccctgac gcggatgcag
      241 cttgccactc gcgtcgcggg tccagccgcc tcgccacttc ttctggttct gccattcctt
      301 cggatagcca atgcccggtt tggtctccac gttgttgaac cacgcgtact ccaccccatc
      361 gcgcgaggtc cacacgttct tgcatgtcac ggagcaggta tggcaaccga tgcatttgtc
      421 caggttcaac accattgcaa cttgtgcacg gatcttcatg atgcggctcc ttcgccttca
      481 ttgagcgggc cttcgagcca cgctatcttt ttcatcttgc gcacgatcac atactcgtcg
      541 cgattcgagc ccacggtgcc gtagtagttg aagccgtagg cctgctgtgc ataacccccg
      601 atcatgtgcg tcggcttgag caccgtgcgc gtgaccgagt tgtggatacc gccgcgcatg
      661 ccgcttgtct cagcgcccgg cacgttgacg attttttcct gcgcgtgata catcaggcac
      721 atgccgcgcg gcacgcgctg gctgaccacc acgcgggcgg tcagcgtgcc attgatattg
      781 aacacttcca cccagtcgtt atcgacgaga ccggattcct ttgcttccgc ttccgatacc
      841 cacacatgag gtcctccgcg tgaaagcgtc agcatgcgca gattgtccga atacgtggag
      901 tggatgcccc atttctggtg cggcgtgacc cagttgagca cgagttcgtg ctcgccgttc
      961 gacttcgcgc cgagcatcgc ggtcacggtc ttcgtgtcga tagccgggcg atacacgcac
     1021 gacccctcac caaagtccag catccagcga tggtcttgat agaactgctg gcggccggtc
     1081 agcgtgcgcc atgggatcag ttcatgcacg ttggtgtaac cggcgttgta gctgacttcc
     1141 tccgactcaa gccctgacca cgttggggcg gagatgatct tgcgcggctg tgcctggaca
     1201 tcgcggaaac ggatcttgtc gtgctcgcgg ccctcggcga ggtgagcgtg ttcgcgtccc
     1261 gtgatcttcg ataacgcttg ccatgccttt actgcaacgt gaccgttcgt ctcgggcgca
     1321 aacgtgagga tcatttcagc ggcatcgata gcgctgtcaa gtcgcggtcg tccctggctc
     1381 acgcctgctt ccgtcacggt gcgcgtgatg tgcgcgagtt cgccgacttc gtgcgcgctg
     1441 ttccagttga tgcccttgcc gccgttgcct tgtgtatcca gaaggggacc gactgacgtg
     1501 aacttgcgat acacgtcctt gtagttccgc tcaacgaccg tcatcgacgg tgctgtcttg
     1561 ccggggatca ggtcgcactc accggcgcgc caatcctttg gttcgaatgg ctgaccaagc
     1621 tctccggggg tgtcgtgcat gagcggcgtg cagaccaggt cggtgcgcgt gcccagatgt
     1681 tcgccaccga tctccgcgaa tttttccgcg atgcccttat agatttccca atcgctcttg
     1741 ctttcccaca acggttgcac ggcttcggac aacggatgaa tgaacggatg catatccgac
     1801 gtattcaagt cgtccttctc gtaccacgtg gcggtcggca gcacgatgtc tccgtagagg
     1861 cacgtcgtgc tcatgcggaa atcaagtacg gtcagcaagt cgagcttgcc ttccgccgcg
     1921 tcgcgcacat gaacctggcc gggcatgatg gtgtcgtttt catcggagaa gagggcattc
     1981 tgcgtgccga gcaaatactt caggaagtat tcgtggccct tgcccgaact acccaggatg
     2041 ttcgaacgcc agacgaacat gttgcgcgga aagttcacgg ggttatccgg gtcatcgcag
     2101 gagaactgca acgcgcccga cttcaggcgg ccgacaacgt agtcaatcgg tttcataccg
     2161 gcacgcgctg cttcgtccgt caggtcgagc ggattcgcgc ccagttgcgg agcgctcggc
     2221 aaccagccca tgcgttcgga ctttgcgttc aggtcgagca tggcgaggtt cgagtaattc
     2281 gccttgttcg cagtcggcgc aagcacttca ttcagcgcga gtttttcgtg acgccactgg
     2341 ctcgtatggt tatagaagaa cgacgtgccg ttcatctggc gtggtggctt agaccagtcg
     2401 agcgcgaacg cgagcggcgc ccagccgaat tgcggccgga gtttttcctg accgacgtaa
     2461 tgcgcccagc caccgccgct cttacccacg caaccgcaca tcatcaggag gttgatgatg
     2521 ccgcgataga tcatgtcgtt gtggtaccag tgattgagcg cggcgcccac gatcaccatg
     2581 ctcttgccct gcgtctgatg ggcgttggta gcgaactcgc gcgctacctg aatcaccaga
     2641 ttgcgtggga ccgtggtgtg cttttcctgc acgcgggcgt gtagggaaca tcgtcgtcgt
     2701 agctgctggc aacgttcggg ccgccaagtc cctgatcgac accgtagttc gccatctgca
     2761 gatcgaacac tgttgcgacc agcgcgcttg tgccgtcagc gagcgtcacg cggcggacag
     2821 gaacgtgacg ttcgagcaac gcgttgtgtt cgctgccgaa gtaggggaag ccgacggcga
     2881 cgacttcatc gtgcgcgcct gcatcgatca aggagacgca cgggtcgatc gctcgtccgc
     2941 tgccgccgtc cttcatttca agattccagc ggccgacctt cagaccgtca ttgtgcgcgg
     3001 cttcgttcca gcgaaacccg atggtgccgt tcggcgcgac aatctcgccg ctttctgcat
     3061 cgatcatcag cgtcttccat tgcgcgttgt tggcttcgtc gaggttatcg gcgagatgcg
     3121 aggcgcgca
//
LOCUS       DATGBK010001289         3130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_62128, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001289 DATGBK010000000
VERSION     DATGBK010001289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3130
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62128"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..558)
                     /locus_tag="VKJ77_18045"
     CDS             complement(<1..558)
                     /locus_tag="VKJ77_18045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47224.1"
                     /translation="MMRVLAGTGMMAVTGGGLLSVSAAALAADTPKKGGSIRVAYDAG
                     SVSDTLDPAVGSTGSDYIRFFMFYSGLTQFDESLTPQMNIAESVSSFDAKTWIIKLRQ
                     GVTFHDGKPLAPADVVYSLLRHKNPQTASKVKTLADQFADIKASGPNEVTMVLDVPNA
                     DLPAILATPQLVIVKDGTTNFASAIG"
     gene            complement(821..2836)
                     /locus_tag="VKJ77_18050"
     CDS             complement(821..2836)
                     /locus_tag="VKJ77_18050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HMC47225.1"
                     /translation="MTFDKAVLQIFANYCVAAAESMAYTLVRTAHSAFVKETEDFSCT
                     LMNTRGLTFASPKTLGATWYPGLDFGAVIDMIDHYEPGDICMTNDAYSGYVATHTPDV
                     MMWKPVFFDGEIVCYVGGHIHNTDMGGAVPASLSRTLTEIYQEGIRFAPTKIVRAGVL
                     DEVLLEHMAINVRAPEQNRGDLKAQIAMLMTGERRVLEIIERFGIEQFRAGMDALLEY
                     SEEQARTIVRSMPDGEYFFAEYADEDSVNGKPLRVALTLTVADGSLVFDFTGSDPQLN
                     SSLNMPTGGKERHVLALVGLNYVLYSLNPDLLLNAGMLKVARCILPEGTIMNCVPPAA
                     VGMRSLTAKVAQYVSFGAFSMVCPERLPACPAGGMSILNVKTVDRRGRAVIASIGPVG
                     GGAGGMISGDGSDASGANVAFLRNTPVEINEAEVPIRITKYGVVPGSAGVGKYRGGLG
                     TVMEFRVFSPGTLVTARNRDRSRFASWGVLGGKAGAVSRFTRNPGREDEEDLGVTDLV
                     MCGPGDVIRLEGCGGGGYGHPHERDEQKVAEDVRRGYLRVDQARDLYGVVLVDGVIDA
                     ATTARLREEAKKIADQTAAAHFDYGAERNAYEAKWTRERYDVLTGILARAPVVWRHFL
                     KHKIFDALDAWEAAGTLTAGAGIIDELYADVLRRYPQLLDVEQAAVA"
     gene            complement(2860..>3130)
                     /locus_tag="VKJ77_18055"
     CDS             complement(2860..>3130)
                     /locus_tag="VKJ77_18055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HMC47226.1"
                     /translation="LRLVITAPTPKPELPKIAAGEGSPKTESEIDVYLDGAWRRVPLY
                     RRKALLAGHRFPGPAIVAQDDTTTCVLPGFNARVDDYGNLFLEAV"
BASE COUNT          603 a         1010 c          925 g          592 t
ORIGIN      
        1 tccaatcgcc gaggcgaagt tcgtcgtgcc gtccttgacg atcacaagtt gcggcgtggc
       61 aaggatcgcc ggcaagtcgg cgttcggcac atcgagcacc atggtcactt cgttcggacc
      121 gctcgccttg atatcggcga actgatcggc gagggtcttc accttcgacg ccgtctgcgg
      181 gttcttgtga cgcagcagtg aataaaccac atcggcaggc gcgagcggct tgccgtcgtg
      241 gaacgtcacc ccttggcgaa gcttgatgat ccacgttttt gcgtcgaaac ttgatacgga
      301 ctccgcaatg ttcatttgcg gcgtcaggct ctcgtcaaac tgagtcaggc cgctatagaa
      361 catgaagaac cggatgtagt cgctgcccgt cgaacccacg gcagggtcga gggtgtcaga
      421 gaccgaaccc gcgtcgtacg ccacccggat actgccgcct ttcttggggg tatcggcggc
      481 cagcgcagcg gcagacaccg acagcaggcc gccgccggtg accgccatca tgccggtgcc
      541 ggccaacacg cgcatcatgt cgcgacgact tagaccaccg ctttttgtat catctttcac
      601 ttgaatgact ccggacgggt aagggatctg aaagaacgtt caggaggcga cggcgttagg
      661 tttatcgcgt ctcttcagca gcatcgtatg cttgcagaat ccgcgtgaaa cgccgacaaa
      721 aaccgcaaaa cagcataaat cgcttgttat cgcatcgcta acgcggtgct ttgcatggcc
      781 gccaaccagc cgatgaaaat gtccgcgttt tccccatgct tcaggcaacg gctgcctgct
      841 ccacatcgag caattggggg tatcgacgca acacgtcggc atacagttcg tcaataattc
      901 cggcgccggc cgtcagcgtg cccgccgctt cccacgcgtc gagcgcatcg aagatcttgt
      961 gcttgaggaa atgacgccac accaccggcg cgcgcgccag gatgccggtt aatacgtcgt
     1021 aacgttcgcg tgtccacttc gcctcatagg cgttgcgctc cgcaccatag tcgaagtgag
     1081 cggctgcagt ctggtccgct atcttcttgg cctcttcgcg cagtcgagcc gtcgtcgctg
     1141 cgtcgatcac cccgtcgacc agcacgacgc catacaagtc acgcgcctga tcgacgcgaa
     1201 ggtaaccgcg ccgcacgtcc tcggccacct tctgctcgtc gcgctcgtga ggatggccgt
     1261 agccgccacc gccgcagcct tcgaggcgga tgacatcgcc aggaccgcac atcacgaggt
     1321 cggtcacgcc caggtcctcc tcgtcctcgc ggcccggatt gcgagtaaag cgcgagacgg
     1381 cgcccgcctt gcccccaagc acgccccagg acgcgaaacg cgaacggtcg cgattgcgcg
     1441 cggtgacgag cgtgcccgga gaaaaaaccc tgaactccat cacggttccc aagccgccgc
     1501 ggtacttgcc cacgcccgcg cttccgggca cgaccccata cttggtgatg cggatcggca
     1561 cttcggcttc gttgatctcg accggcgtat tgcgcaggaa cgccacgttc gcgccggacg
     1621 cgtccgaccc gtcgcccgag atcataccgc ccgcgccacc gcctaccgga ccaatggaag
     1681 cgatcaccgc acgtccccgg cggtccacgg tcttgacgtt gagaatcgac atgcccccgg
     1741 cgggacacgc cggcaaacgt tccgggcaca ccatcgagaa cgcaccgaag ctcacgtact
     1801 gcgcgacctt cgcggtcagg ctgcgcatcc cgaccgccgc gggcggaacg caattcatga
     1861 tcgtgccttc aggcaggatg cagcgcgcca ctttgagcat ccccgcgttg agcagcagat
     1921 cgggattaag cgagtacagg acgtagttga gacccacgag cgcgaggacg tggcgctcct
     1981 tgccgcctgt gggcatattc agcgacgaat tcagttgcgg atcgctaccg gtgaaatcga
     2041 agaccagcga accgtccgct acagtcagcg tcagcgcaac acgcagcggc ttgccgttga
     2101 ccgaatcttc gtcggcatat tcagcgaaga aatattcgcc atccggcatg ctcctcacaa
     2161 tcgtgcgcgc ctgctcttcc gagtactcga gcagcgcgtc cattccggcg cggaattgct
     2221 cgattccgaa gcgctcgatg atctccagca cccggcgctc gccggtcatc agcatcgcaa
     2281 tttgtgcctt caggtcgccg cgattctgct cgggcgcgcg cacgttgatc gccatgtgtt
     2341 cgagcaggac ctcgtccagc acgcccgccc gaacaatctt ggtcggcgcg aagcggatgc
     2401 cttcctggta gatctcggtt agcgtgcgcg acagcgacgc cggcaccgcg ccgcccatgt
     2461 cggtgttatg aatatgtccg ccgacatagc agacaatctc gccgtcgaaa aacaccggct
     2521 tccacatcat cacgtcgggc gtgtgggtcg ccacgtagcc gctgtacgcg tcgttggtca
     2581 tgcagatatc gcccggttcg tagtggtcga tcatgtcgat cacagcaccg aagtcgagac
     2641 ccggatacca cgtggcgccc agcgttttcg gcgaagcgaa cgtgaggccg cgggtgttca
     2701 tcagcgtgca ggagaagtct tccgtttcct tcacgaaagc ggaatgcgcg gtgcgcacga
     2761 gcgtataggc catgctttca gcggccgcga cgcagtagtt cgcgaaaatc tggaggacgg
     2821 ctttatcgaa tgtcatgttg cgtttccaag gtcagctatt caaacggctt cgagaaaaag
     2881 attgccgtag tcgtctacgc gggcgttgaa acccggcagc acgcaggtgg tggtgtcgtc
     2941 ctgggcaacg atcgcggggc cggggaatcg atgccccgcc agcagcgcct tacgccggta
     3001 gagcggaacg cgacgccacg caccgtcgag gtagacgtcg atttctgatt cggtttttgg
     3061 tgaaccctcg cccgccgcta tctttggcaa ctcgggcttg ggcgtgggcg cggtgatgac
     3121 cagcctgagc
//
LOCUS       DATGBK010001290         1957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_84627, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001290 DATGBK010000000
VERSION     DATGBK010001290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84627"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1205)
                     /gene="pyk"
                     /locus_tag="VKJ77_18060"
     CDS             complement(<1..1205)
                     /gene="pyk"
                     /locus_tag="VKJ77_18060"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HMC47227.1"
                     /translation="MHRATKIVATIGPASSTPEILLQMMQAGLDVVRFNFSHGTADDH
                     RQRAQYVRDAAKQCGREVALMADLQGPKIRVGKFENGKVTLIAGNSFILDARCELGND
                     ERVGLDYPDLPRDLRNGDVLLLNDGLIVLDVVRVIGEEIHTTVKVGGDLSNNKGINRQ
                     GGGLTAPALTEKDMEDIKTAMSLGADFVAVSFPKNATDMEMARQLANIAGAPYGIKPK
                     MIAKIERAEAIPALQGILDASDGIMVARGDLAVEVGNAAVPALQKRMIRMALEANKFV
                     ITATQMMESMIHAPVPTRAEVSDVANAVLDGTDAVMLSAETAAGKYPVTTIETMAAIC
                     LEAEKSEQSELDKDFLDRTFTRIDQSIAMGALFTAYHLGAKAIVALTESGATALWMSR
                     HWSHVPIFAL"
     gene            complement(1636..>1957)
                     /gene="pgk"
                     /locus_tag="VKJ77_18065"
     CDS             complement(1636..>1957)
                     /gene="pgk"
                     /locus_tag="VKJ77_18065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HMC47228.1"
                     /translation="DDLILDIGPDTAKALAAQLEKAGTIVWNGPVGVFEFDQFGNGTK
                     TLADAIANSSAFSIAGGGDTLAAIQKYGIHDKISYISTGGGAFLEFLEGKTLPAVEVL
                     ESRA"
BASE COUNT          382 a          657 c          519 g          399 t
ORIGIN      
        1 agcgcaaaaa tgggcacatg cgaccaatgc cgcgacatcc acaacgccgt tgccccggac
       61 tcggtcaaag ccacaattgc cttcgcgccc aagtgataag cggtaaacaa cgcacccatc
      121 gcaatggatt gatcgatccg cgtgaacgtg cgatcaagga aatccttgtc aagctcgctc
      181 tgctcagact tctcggcttc cagacaaatg gccgccatcg tctcgatggt cgtcaccgga
      241 tacttccccg ccgccgtttc cgccgacaac atcaccgcat ccgttccgtc cagcaccgca
      301 ttcgccacat cggatacttc agcacgtgta ggcacaggcg catggatcat cgactccatc
      361 atctgcgtcg ccgtaatcac gaacttgttc gcctcgagcg ccatccggat catgcgcttc
      421 tgcaaagccg gcacagccgc attacccact tccaccgcca gatcgccccg cgcaaccatg
      481 atgccgtccg acgcatcaag aatgccctgt aacgccggaa tggcttccgc acgctcgatc
      541 ttcgcgatca tcttcggctt gatgccatac ggcgcgcccg cgatgttcgc cagttgccgc
      601 gccatctcca tatccgtagc gttcttcgga aacgataccg ccacaaagtc cgcgccgagg
      661 gacatcgccg tcttgatgtc ctccatgtcc ttctcggtca gcgccggcgc cgtgaggccg
      721 ccgccctgcc ggttgatgcc cttgttgttc gagagatcac cgcccacttt caccgtggta
      781 tgaatctcct cgccaatcac gcggaccacg tcgagcacga tcaagccgtc gttcagcaac
      841 agcacgtcgc cattgcgcag gtcgcgcggc agatcggggt aatccaggcc aacacgttcg
      901 tcattgccta gttcacaacg agcatcgagg atgaacgaat tgcccgcgat caacgtgacc
      961 ttgccgtttt cgaacttgcc cacgcgaatc ttcgggcctt gcaaatcagc catcaacgcc
     1021 acttcacgcc cgcattgctt ggcggcgtcg cgaacgtatt gcgcgcgctg gcgatggtcg
     1081 tcggccgtgc cgtgcgagaa gttgaagcgg accacgtcga gaccggcctg catcatttgc
     1141 agcaggatct caggggtact ggaagcgggg ccgatagtgg cgacaatctt tgtagcgcga
     1201 tgcatggaat tcctcgtctg ggtggtatcg cctgaaacag cgctgcgagt acggtgtgcc
     1261 gacggggatg aagatgtctc cgcctgcgaa cgcgcgccgg ctcgggccgg cgtcgctttg
     1321 tgatgactat tcgatatctg tccggcgacc ggaatcagcg acgcactcgc gccaccaatc
     1381 atgaccgcgg tttccttgcg tatttccttc cttctttcct gctttatatc cgaaccacgc
     1441 cgggccggtg tcgcagcgga acgcttcgac ttggccggcg cgcgggcggg gctgggtttg
     1501 accccgaccg ccaccctcga tccaatttca gccgctaccg acaaacccgc gtcagcagcc
     1561 aactcttctt tatctgcaat aacctcaacg acggactcag gacgatcgct cttcgacgtg
     1621 gctcgtttca tcggctcagg cccgcgattc gagtacttcc accgcgggca acgtcttgcc
     1681 ttccaaaaac tccaggaacg cgccgccgcc agttgaaatg tacgagatct tgtcatggat
     1741 accgtacttc tggatggccg cgagcgtatc gccgccacct gcaatcgaaa acgccgatga
     1801 gttcgcaatc gcatccgcca gcgtcttcgt gccgttgccg aactggtcga attcgaacac
     1861 gccaaccggg ccgttccaca cgatcgtgcc cgccttctcc aactgcgcgg caagcgcctt
     1921 ggcggtgtca gggccgatat cgaggatcag gtcgtcg
//
LOCUS       DATGBK010001291         2288 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_246858, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001291 DATGBK010000000
VERSION     DATGBK010001291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2288
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246858"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1463)
                     /gene="leuS"
                     /locus_tag="VKJ77_18070"
     CDS             complement(<1..1463)
                     /gene="leuS"
                     /locus_tag="VKJ77_18070"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012363082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HMC47229.1"
                     /translation="MQDKYVPADVESAAQSDWRAKDVYRSTETSDKPKFYCVSMLPYP
                     SGKLHMGHVRNYTINDVMYRFLRMNGHNVLMPMGWDAFGMPAENAAMANNVPPAKWTY
                     DNIDYMKKQMQSMGLAIDWSREIASCKPEYYKWNQWLFLKMLEKGIAYKKTGTVNWDP
                     EDQTVLANEQVIDGRGWRSGALVEKREIPMYYMRITDYADQLLGDLEGLGWPERVKVM
                     QQNWIGKSFGVNFGFPYEIDGESKLLRVFTTRADTIMGVTFAAVAAEHPLATRLARDN
                     AALQAFIEECKRGGVAEADVATMEKKGMPTGFFVTHPLTQEKVEVWIGNYVLMSYGEG
                     AVMGVPSHDERDFAFAKKYALPIKQVVAVEGKTYSTDAWEEWYGEKGTGTLINSGKYD
                     GLNFEEATTAIAADLKAQNLGDKKITWRLRDWGISRQRYWGTPIPIIHCVTCGDVPVP
                     EADLPVVLPEDLVPDGTGNPLAKSEAFVNCTCPKCGAP"
     gene            complement(1828..2259)
                     /locus_tag="VKJ77_18075"
     CDS             complement(1828..2259)
                     /locus_tag="VKJ77_18075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HMC47230.1"
                     /translation="MAFGGLDKKSNGAPMAEINMTPLIDVMLVLLVIFIITAPLFTHA
                     IRLDLPKVASQVARETPETITLSIDDTGKIYWNDKPTTLEQMRTQFVAEGKRATPPEI
                     HLRASSATRYDVIAQVMGAAQGAGLNKIGFVTDQVKQPVHQ"
BASE COUNT          369 a          720 c          675 g          524 t
ORIGIN      
        1 ggcgcgccgc acttcgggca cgtgcaattc acgaacgctt cagacttcgc gagcgggttg
       61 cccgtgccgt ccggcaccag gtcttccggc aacacaacag gcagatccgc ttccggcacc
      121 ggcacgtcgc cgcaagtgac gcaatggatg atcgggatcg gcgtacccca gtagcgctgg
      181 cgggaaatgc cccagtcgcg cagacgccag gtgatttttt tatcgccgag attctgcgct
      241 ttcaggtcgg ccgcgattgc ggtagtcgct tcttcgaaat taaggccgtc gtacttgcca
      301 ctgttgatca gcgtgcccgt acccttctcg ccgtaccact cttcccacgc gtccgtgctg
      361 taggtcttgc cttcgaccgc aaccacttgc ttgatcggca gcgcgtattt cttcgcgaac
      421 gcgaagtcgc gttcgtcgtg agacggcacg cccatgaccg cgccttcgcc gtagctcatc
      481 agcacgtaat tgccgatcca cacttcgacc ttttcctgcg tcagcggatg cgtgacgaaa
      541 aagcccgtgg gcatgccctt cttttccatc gtcgcgacgt cggcttcagc cacgccgccg
      601 cgtttgcatt cttcgatgaa cgcttgcaga gcagcgttat cgcgagcgag gcgcgttgcc
      661 agcggatgtt ccgcagcaac cgcggcgaag gtcacgccca tgatggtgtc ggcgcgcgtg
      721 gtgaacacgc gcagcaattt gctttcgccg tcgatctcgt acgggaagcc gaaattcacg
      781 ccgaagctct tgccgatcca gttctgctgc atgaccttca cgcgctcggg ccagccgagg
      841 ccttccaggt cgccgagcaa ctgatccgcg tagtccgtga tgcgcatgta gtacatcggg
      901 atttcgcgct tttccaccag cgcgccggaa cgccaaccgc gtccgtcgat cacctgctcg
      961 ttggcaagca ccgtctgatc ttccgggtcc cagttcaccg tcccagtctt tttatacgcg
     1021 atgccctttt ccagcatctt caggaacagc cactggttcc acttgtagta ctcgggcttg
     1081 caagacgcaa tttcccgcga ccagtcgata gccagcccca tcgactgcat ctgcttcttc
     1141 atgtagtcga tgttgtcgta ggtccacttc gccggcggca cattgttcgc catcgcggcg
     1201 ttttccgcgg gcatgccgaa cgcgtcccaa cccatgggca tcagcacgtt gtggccgttc
     1261 atgcgcagga accggtacat cacgtcattg atggtgtagt tgcgcacgtg acccatgtgc
     1321 agcttgcccg acgggtacgg cagcatcgag acgcagtaga acttcggctt gtcgctggtt
     1381 tcggtcgacc ggtagacgtc tttcgcgcgc cagtcgcttt gcgctgcgga ttcgacgtcg
     1441 gcgggtacgt atttatcttg catggtgtgg ttttggcggt tttgcctttc ggcgttgcgg
     1501 cagtgctgcc tcggcggcac ggttaccttg cggcagtgct cggctggcgt cggtttgcgg
     1561 gttttgcccg ggttttacaa ggtcttacga gaatcgcggc tatcgggccg ctgcctcgcg
     1621 ccattccaac cccggtgggc gcgcccgcgc ggccaaagcg caattatacc gttgaggcag
     1681 aaggttctgg cgctacgcgt gtccgccgtg ctggactggc ttgacgctcg ccgcgctcga
     1741 tgcgagtgct tcgggcgagt cgcgggactt ttatcccggc gaagcggtgc gctcgccggt
     1801 gtggcttggg agcgttgccc gaacaggtta ctgatgcacc ggctgcttca cctggtcggt
     1861 gacgaagcca atcttgttca gccccgcgcc ctgcgccgcg cccatcacct gcgcaatcac
     1921 gtcataacgc gttgcactcg atgccctcag gtgaatctcc ggcggtgtcg cacgtttgcc
     1981 ttcagccacg aactgggtgc gcatctgctc gagcgtagtc ggcttgtcgt tccagtaaat
     2041 cttgcccgta tcgtcgatgg aaagcgtgat cgtctccggc gtttcgcgcg ccacttgcga
     2101 cgccaccttt ggcagatcga gccgtatcgc gtgcgtgaac aagggcgccg tgatgatgaa
     2161 aatcaccagc aagaccagca tgacgtcgat cagcggcgtc atgttgatct cggccatggg
     2221 agcgccgttc gatttcttgt ccagtccgcc gaatgccatg atgtactcgt ccgggtgcag
     2281 ggtattga
//
LOCUS       DATGBK010001292         2680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_316177, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001292 DATGBK010000000
VERSION     DATGBK010001292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316177"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1213)
                     /locus_tag="VKJ77_18080"
     CDS             complement(<1..1213)
                     /locus_tag="VKJ77_18080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006399040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47231.1"
                     /translation="MEAVTTHGAARAATEQSVDEKRRNAIKGAFFSEFIDMFDIYLPV
                     VVLAPVLFFFQPPHLAPGMEAILASLVFITTLLGRPIGALLFGMVADRVGRRRASILS
                     VSGFGVVTLLIALLPGYETLGIGSYWLLVILRFIDGIFLGGGYTGAMPLAIEYSKKEQ
                     RGFVGGLIIAGFPAAYVTINLVAMLMFAVFPLNGLHSPYVQWGWRIPFVIGSVLAGVL
                     ALYYVHKVSESEIWESETGEKKPEKLPLSDLLRGKSGRNLLQVLLMMSGFWLTQNIIT
                     IFMPTGLLVRTLHLSGFQMSLTLLLSYFVLFFSYIGSGMLGQKIGRRTFFVVVGPLIA
                     TVGAVILYVLSNVDGLSLPVIMLLVMLLSVLVTSPWGVIVTYINERFVTDVRATGFGV
                     GFSLSVIIPSFY"
     gene            complement(1288..1686)
                     /locus_tag="VKJ77_18085"
     CDS             complement(1288..1686)
                     /locus_tag="VKJ77_18085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012248581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HMC47232.1"
                     /translation="MEDNNSRFDKGFENRKEVLGASHVEKSWANADDFNRPMQKLVTE
                     YAWGEIWGDPTLTFKTRSMLNIGMLTAMSQHHELSVHVKGALKNGVTKEEIRAVLMQA
                     AVYCGAPLALAAFRVATDAIKAYEADAAKG"
     gene            complement(1728..>2680)
                     /locus_tag="VKJ77_18090"
     CDS             complement(1728..>2680)
                     /locus_tag="VKJ77_18090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC47233.1"
                     /translation="LAAGCTMVLKPSEYSALSALLFAEVAHEAGVPPGVLNVVNGDGP
                     GVGAAIASHPDIDMVSFTGSTRAGILVAKMAAETVKRVAQELGGKSANILLDDVNLDD
                     AVTRGVAACFTNSGQSCSIPTRMLVPHHMMNDAAQIAKAAASSYSVGATDSETTQLGP
                     LVNRNQFERVQVLIQKGIDEGARLVAGGTGRPDGLSKGYYVKPTIFADVTPDMTIARE
                     EIFGPVLSIMGYDSEEEAIRIANGTEYGLAAYVQSGDIERARNIGRQLRAGGVHLNYP
                     AADFTAPFGGYKRSGNGREWGEAGLREYLEIKAMVGYGNA"
BASE COUNT          572 a          842 c          766 g          500 t
ORIGIN      
        1 cataaaacga cgggatgatc accgagaggc tgaagcccac gccaaaacca gtggcgcgaa
       61 catcggtcac gaagcgctcg ttgatgtaag tcacgatcac gccccacggt gacgtgacca
      121 gcaccgagag cagcatgacc agcagcatga tgaccggcaa ggacagcccg tcaacattgg
      181 aaagcacata gagaatgacg gcgcccacag tcgcaatcaa cggacccacg accacgaaaa
      241 acgtgcgtcg tccgattttc tggccgagca tgcccgagcc gatatagctg aaaaacagca
      301 cgaaatagga cagcagcaaa gtcagtgaca tctggaaacc ggacaggtgc agcgtgcgca
      361 cgagcagacc tgtcggcatg aagatcgtga tgatgttctg cgtgagccag aagcccgaca
      421 tcatcaacag cacctggagc aggttgcgtc cgctcttgcc gcgaagcaga tcggaaagcg
      481 gcagtttctc cggcttcttt tcgccggtct cgctctccca gatctccgat tccgagactt
      541 tatgaacgta gtacaacgcg agcacacccg ccaataccga gccaatgacg aacggaatgc
      601 gccagcccca ctgcacatag ggtgaatgca gaccgttgag cggaaacacg gcgaacatca
      661 gcatggcaac caggttgatc gtcacatagg ccgccgggaa accagcaatg atcaatccgc
      721 cgacgaagcc gcgttgctcc ttcttcgaat attcgatggc aagcggcatc gcgcccgtgt
      781 agccaccgcc gaggaaaata ccgtcgataa accgcaggat cacgagcagc cagtaggaac
      841 cgatacccag cgtttcgtat ccggggagca gcgcgatcag tagcgtgaca acgccgaatc
      901 cggagaccga gagaattgac gcccggcgac gccccacccg gtccgccacc atgccgaaca
      961 gcagcgcgcc gataggccgg cccagcaagg tggtaatgaa aacgagggaa gcgaggatcg
     1021 cttccatgcc gggtgcgaga tgcggcggct ggaaaaagaa cagcaccggg gcaagcacga
     1081 cgaccggcag gtaaatatcg aacatgtcga tgaattcgga gaagaacgcg cccttgatcg
     1141 cgttccggcg tttctcatcg acggactgct cggtcgccgc ccttgcggca ccgtgtgtcg
     1201 tgactgcttc catgctcgtc tccattgatg tcgtgatgca tcgctcgcgg atgcttactg
     1261 aacgttggac cccgggaacg tcggacctca gcccttggcg gcatcggctt cgtaggcctt
     1321 gatcgcatcg gtcgcgaccc ggaaagccgc tagtgccagg ggagcgccgc agtacacggc
     1381 tgcctgcatc agcaccgcgc ggatctcctc cttcgtgacg ccgttcttga gcgcgccttt
     1441 cacgtgcaca gacagttcgt gatgctgact catggcggtc agcatgccga tgttgagcat
     1501 gctccgggtc ttgaacgtca aggtcggatc gccccagatc tcgccccatg cgtattcagt
     1561 gacgagcttc tgcatcggcc ggttgaagtc gtccgcgttc gcccaggact tctcgacatg
     1621 cgatgcaccg agcacttcct tacggttctc aaaacccttg tcaaaacgtg agttgttatc
     1681 ttccattgct tatgaccctc tcgtgttacg tcatttccag gtgagcgtca ggcgttgccg
     1741 tagccgacca ttgccttgat ttcaaggtat tcacgcagac cagcttcgcc ccattcgcgg
     1801 ccatttcccg agcgcttgta gccgccgaag ggcgcggtga aatcggccgc gggatagttc
     1861 aggtggacgc cacccgcgcg aagctggcgg ccgatgtttc gggcgcgctc aatatcgccg
     1921 gactgtacat acgcagccaa accgtattcg gttccattag caatcctgat agcctcttct
     1981 tcgctgtcat agcccatgat ggacaacacc ggcccgaaga tctcttcgcg cgcaatggtc
     2041 atgtcgggcg tgacgtccgc gaagatcgtc ggtttgacgt agtagccctt cgataacccg
     2101 tccggccgcc ccgttcctcc ggcgacgagc cgtgcgccct cgtcaatacc cttctggatc
     2161 agcacctgca cgcgctcgaa ctggttgcga ttgacaagcg gtccgagctg cgtggtttcg
     2221 ctgtccgttg cacccacgct atagctcgat gccgccgctt tcgcgatctg cgctgcgtcg
     2281 ttcatcatgt gatgcggcac gagcatgcgg gtggggatcg aacaggattg tccggaattg
     2341 gtgaagcacg ccgccacgcc gcgcgtcacg gcatcgtcca ggttcacgtc gtcgagcagg
     2401 atgttcgcgg acttgccacc gagttcctgc gccacgcgct tgaccgtttc ggctgccatc
     2461 tttgcaacca ggatgcccgc gcgcgtcgaa ccggtgaacg acaccatgtc gatatccgga
     2521 tgcgacgcga tcgccgcgcc cacgcccggt ccgtcgccat tcactacgtt caggacgccc
     2581 ggcggaacgc cggcttcatg cgcaacctcg gcgaacaaca gcgcactcag cgccgagtat
     2641 tcgctcggct taaggaccat cgtgcaaccc gcggccagtg
//
LOCUS       DATGBK010001293         2021 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_270598, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001293 DATGBK010000000
VERSION     DATGBK010001293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270598"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..770)
                     /locus_tag="VKJ77_18095"
     CDS             complement(<1..770)
                     /locus_tag="VKJ77_18095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HMC47234.1"
                     /translation="MNPSTSSAQNSALPLAGIRVVELSHMVMGPTCGMILGDLGAEVI
                     KVEPPRGDGTRRLLGTGAGFFRTFNRNKKSIALDLDTEAGLGALNKLIDTADVFIENF
                     KPGRMATLGLDYESLKARDPGLIYVSHKGFLKGPYEHRLALDEVVQMMAGLAYMTGPV
                     GRPLRAGSSVNDIMGGMFGAIGVLAALFERKSSGIGKEVQSALFENCVLLSAQHMQQF
                     AATGVAAAPMPERISAWAVYDVFTLAGGEQMFIAATGDT"
     gene            complement(875..1912)
                     /locus_tag="VKJ77_18100"
     CDS             complement(875..1912)
                     /locus_tag="VKJ77_18100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020201630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HMC47235.1"
                     /translation="MDVPVLGAGAVGPAAAPKARIVLIGTGGTIAGRGASPVNTSAYD
                     CSVLTVDEILGGLPAAASVADISAEQLFQCGSENFGSGQLLQLGKRISSLLKRDDVDG
                     VVVTHGTDTIDETSYFLHLTLKSTKPVVVVGAMRPPSALSSDGPLNLYNAIVVAASQL
                     AHGKGTLVVANDEIHTARDVVKTNTFKQEAFSSPYGPLGYIVEGKPVFYRLPARRHTV
                     QSEWSIDEIDALPEVGILYAHGGMNDAMVHAMLDSGVKALIYAATGNGNVATSVVASL
                     VDARVRGIHVVRGSRTGSGVVIRNAAQPDDRYDWLVTDDQVPHKARILMMLALTGEHC
                     TQKLQNAFLTY"
BASE COUNT          390 a          637 c          597 g          397 t
ORIGIN      
        1 gtgtctcccg tcgccgcaat gaacatctgc tcgcctccgg caagcgtgaa gacgtcgtac
       61 accgcccacg cgctgatgcg ctcaggcatc ggggcggcgg cgactccggt cgcggcgaac
      121 tgttgcatat gctgggcgga cagcagcacg caattctcga acaacgcgct ttgcacttcc
      181 ttgccgatgc cgctggactt gcgctcgaag agcgctgcaa gcacgccaat cgcgccgaac
      241 atcccgccca tgatgtcgtt cacggagctt cctgcgcgca gcggccggcc gaccggtccc
      301 gtcatgtaag cgagacccgc catcatttgc acgacttcat caagggcgag gcgatgttcg
      361 taagggccct tgagaaagcc cttgtgcgac acataaatca agccggggtc ccgcgctttc
      421 aaactctcat agtccagacc cagcgttgcc atgcggccag gtttgaagtt ttcgataaag
      481 acatcggccg tgtcgatcag cttgttgagc gcgccgagac ccgcttcggt gtcgaggtcg
      541 agggcgatgc tcttcttgtt gcgattaaag gtgcggaaga aaccagcgcc ggtgccgagc
      601 agacgtcgcg tgccgtcgcc gcgaggtggc tcgaccttga tgacttcagc accgaggtcc
      661 cccaggatca tgccgcaggt cggtcccatc accatgtgcg acagctcgac cacgcgaatg
      721 cctgccagtg gcagggcgct gttttgtgcg gaagacgtag aggggttcat ttgagcgcct
      781 ggagtcaagg cgctcagttt gcaccagcct gagcgtattg accgctggga cgtacccgac
      841 ctgccgggcc ccaggtcgta gcgcataggc ccggtcaata cgtcaaaaaa gcgttctgaa
      901 gtttttgtgt gcaatgctct ccagtgagcg ccagcatcat caggatgcgc gccttgtgcg
      961 ggacctgatc gtccgttacc agccagtcgt agcggtcatc gggctgcgcg gcattacgga
     1021 tgaccacgcc gcttcccgtg cgcgaacctc ggacgacgtg aatgccgcgc actctcgcgt
     1081 cgaccagcga cgccactacc gaggtcgcca cgttgccgtt gccggtcgcc gcatagatga
     1141 gcgccttcac ccctgagtcg agcatggcgt gcaccatcgc gtcgttcatg ccgccgtgcg
     1201 catagaggat accgacctcc ggcagcgcgt cgatctcgtc gatcgaccat tcgctttgca
     1261 ctgtatgccg acgcgccggc agtcgataaa agactggctt gccctcgacg atatatccca
     1321 agggaccata cggagagctg aacgcctctt gcttgaacgt attggtcttc acaacatcac
     1381 gcgcggtgtg aatctcatcg tttgcaacga ccagcgtgcc cttgccatgg gctaactgac
     1441 tcgccgccac aacgatcgcg ttgtaaaggt taagcggtcc gtctgaactg agcgcggagg
     1501 gtggacgcat cgcgcccacc acaactaccg gcttggtgct tttgagcgtc agatgcagga
     1561 aataagaggt ttcatcgatt gtatcggtgc cgtgcgtgac gacaacgcca tccacgtcgt
     1621 cccgcttcag cagcgatgaa atccgcttgc ccaactgcag cagttgcccg ctgccgaaat
     1681 tctccgagcc gcattgaaat agctgctcgg cgctgatgtc ggcaactgat gccgcagcgg
     1741 gcagaccgcc aagaatctcg tcgacggtca gcacggagca gtcatacgcc gacgtgttga
     1801 ccggcgatgc accgcggcct gcgatcgtac cgcctgtgcc aatcagtacg atccgcgctt
     1861 tcggcgcggc agcagggcca actgcgccag cgcccagaac aggaacgtcc atgcgcacta
     1921 catcttcacg acggtgagca gcgtctgctt gccgcttttg tagtcataca gggagatcgc
     1981 gccttgcttc aggtcaccat gtgcgtcgaa ctgcgtgcgg c
//
LOCUS       DATGBK010001294         1534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_154147, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001294 DATGBK010000000
VERSION     DATGBK010001294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154147"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..563)
                     /locus_tag="VKJ77_18105"
     CDS             complement(<1..563)
                     /locus_tag="VKJ77_18105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004202658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47236.1"
                     /translation="MRRLPPLNALQIFETVARHRSFTRAADHLCLTQGAVSRQILTLE
                     EYYGFPLFTRHSKGLALTNEGEQLLPTVKESFSRIEEISLRLTRQRTDLALKVPTCLM
                     RWILPKIMRFQAEYPEIQLQLTTTWQHDVDFQVEPFDAAIIYGSSPGVDVHSIALFEE
                     QLTPVCAPSLLEEKSLDNVADLARHTLL"
     gene            852..>1534
                     /locus_tag="VKJ77_18110"
     CDS             852..>1534
                     /locus_tag="VKJ77_18110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007590370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HMC47237.1"
                     /translation="MNSPENISLFGHASGHCPPRPVDTQTCGEVLVRLLEHYGVELVF
                     GIPGVHTVELYRGLATSTLRHVTPRHEQGAGFMADGYARVTGKPGVCFIITGPGMTNI
                     ATAMAQAYADSIPMLVISSVNNTRQLGGGTGRLHELPSQRDVFAGLTAFSHTLLDADE
                     LPQVLARAFAVFATARPRPVHIEIPLDVIVAPARDTTSRVVVLPAKPAGAPAALDEAT
                     ALLANARRPL"
BASE COUNT          313 a          500 c          437 g          284 t
ORIGIN      
        1 agcagcgtat gccgggcaag atcggccacg ttatcgagcg atttttcctc cagcaacgaa
       61 ggcgcacaca ccggcgtcag ttgctcctcg aaaagcgcaa tcgaatgaac gtccacgccc
      121 ggggacgagc cataaatgat cgcggcgtcg aacggctcga cctggaaatc gacgtcgtgt
      181 tgccaggtgg tcgtgagctg caactggatc tcagggtact ccgcctggaa gcgcatgatc
      241 ttcggcagga tccagcgcat cagacaggtg ggtaccttca gcgcgaggtc ggtacgctgc
      301 cgggtcagcc gcagtgaaat ctcctcgatc cgcgagaagc tctctttcac ggtcggcaat
      361 agctgctcgc cttcgttcgt cagcgcgagc cccttcgaat gccgcgtgaa cagcggaaaa
      421 ccgtagtact cctccagcgt caggatctgg cggctcacgg caccttgcgt caggcaaagg
      481 tgatcggctg cacgcgtgaa actgcggtgg cgcgcgaccg tttcaaagat ttgcagcgca
      541 ttcagcggcg gcaggcggcg cattttcgtt cccttcctgc atttgaaaaa atcatgactg
      601 ccggtgtgct ttccggccag agggttttaa atatacacgg gtgcaacgct gcatatatac
      661 accgaattca gctccccgcg tctgctgaaa gcactactcc tctggataag cccatgagcc
      721 aaaaacatgg cgcgcatgca aattcatcga ttgccgttca cgtgccatgc accaagaatg
      781 catcaacacg caacctccgg agaaaggcat gtaccggcaa cggatcaaac ggatcaatcc
      841 gcaggagccc catgaattcg cctgaaaata tctcgctctt cggacacgcg agcggtcact
      901 gcccgccccg gccagtcgac acacagacct gtggtgaagt gctcgtgagg ctactcgagc
      961 actacggcgt tgaactggtg ttcggcatcc ccggcgtcca taccgtcgag ctgtatcgtg
     1021 gactggcaac atcgacgctg cgccatgtca cccctcgcca cgagcagggc gcgggcttta
     1081 tggcggacgg gtatgcacgg gttacgggaa aacccggtgt gtgcttcatc atcaccggac
     1141 cgggcatgac gaatatcgcg accgcgatgg cgcaggctta cgccgattcg atccccatgc
     1201 tcgtcatctc aagcgtcaac aacacgcgcc aacttggcgg aggaaccggg cgtctgcacg
     1261 agttgccgtc gcagcgcgac gtattcgccg ggctcaccgc gttctcccac acgttgctcg
     1321 acgctgacga actaccgcaa gtcctggccc gcgcgttcgc ggtattcgcc accgcgcggc
     1381 cgcgccccgt tcacatcgag attccgctcg acgtgatcgt cgcacctgcc cgcgacacga
     1441 catcccgcgt ggtagtgctg cccgcgaaac ccgccggcgc accggctgcc ctcgatgagg
     1501 ccaccgccct gctcgccaac gcgcgccgcc cgct
//
LOCUS       DATGBK010001295         3236 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_246877, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001295 DATGBK010000000
VERSION     DATGBK010001295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3236
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246877"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..1206)
                     /locus_tag="VKJ77_18115"
     CDS             complement(139..1206)
                     /locus_tag="VKJ77_18115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC47238.1"
                     /translation="MRIAQIAPLTESVPPKLYGGTERVVSYITEALVELGHDVTLFAS
                     GDSQTKAKLEAVWPRALRLDPAIRDRIAPHMLLMEMVRRRADDFDVLHFHMDYYSFSL
                     FKRQDTPFVTTLHGRLDLPEQQPIFNTFDTAPVISISDAQRHPLPQAKWLTTVYHGLP
                     ETRYMPQPVEQTYLAFLGRISPEKRVDTAIRIAGRCGMKIKIAAKVDSADREYYEREI
                     APLMELPYVEFIGEIADDQKASFLSGAHALLFPIDWPEPFGLVMIESMACGTPVIAFN
                     RGSVPEVLDEGVTGFIVEDEIGAVAAVNRLHTVSRAGVRKRFEERFTSHRMAQQYVDA
                     YQAVMRAQKRSRFKLIDSATS"
     gene            complement(1480..2898)
                     /gene="otsA"
                     /locus_tag="VKJ77_18120"
     CDS             complement(1480..2898)
                     /gene="otsA"
                     /locus_tag="VKJ77_18120"
                     /EC_number="2.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate
                     synthase (UDP-forming) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalose-phosphate synthase
                     (UDP-forming)"
                     /protein_id="HMC47239.1"
                     /translation="MTRLVVVSNRVASPTETKGSAGGLAVGVFGALKDSGGVWFGWSG
                     DVVSDSVANQGPKLEQDGAVTFATVGLPKKDYDQYYRGFSNATLWPVFHYRNDLAVYD
                     RDEYAGYRRVNSWLAHRAIKLLQPDDVIWVHDYHLIPFGEALRSEGVTNRMGFFLHIP
                     FPSPQILLNIPPHEELVKSLCCYDVVGFQTPGDQAAFHDYIVRHAHGTATADGEVEAF
                     GRRLKTGVYRIGIFPDEIAEQATRGEARQDVMDLKQSLEGRKLIMSVDRLDYSKGLVE
                     RFKAFEHFLEKSPEWRGNVTLVQIAPPTRSDVDTYQQIRHNLEYEAGRINGRYSGLDY
                     TPIRYMNQRYDRWKLMSLFRESQIGLVTPLRDGMNLVAKEYVAAQNPDDPGVLVLSQF
                     AGAADEMKGALMVNPHDIVGMSEAIGRALSMPLAERRERYETNMVMLRKYDLGVWRDS
                     FLADLRGVKLNKQPNKRPASNK"
BASE COUNT          573 a          976 c          975 g          712 t
ORIGIN      
        1 cttcggctgg caagcgccgg cctgaattct cgatcaagcg cgcaagttaa aaccgccgcg
       61 cagcatgacc ggaaggtcgt gctgcgcggc ggtttttttg ctttgacgcg ctgacgaagc
      121 gcgtcttgga agcggttttc agctggtcgc gctgtcaatg agcttgaagc gcgaacgttt
      181 ctgcgcgcgc atgactgcct gataagcatc aacgtattgc tgcgccatgc gatgcgacgt
      241 gaagcgctct tcaaagcgct tgcgcacgcc cgcgcgcgac accgtatgca gccggttcac
      301 ggccgccact gcgccaatct cgtcctcgac gataaacccc gtcacgccct cgtccagcac
      361 ttccggcacc gagccgcggt tgaacgcgat caccggcgtg ccgcacgcca tcgactcgat
      421 catgaccagc ccgaacggct ccggccaatc gatcggaaac agcagcgcgt gggcgccgga
      481 gaggaagctg gccttctggt catcggcgat ttcaccgatg aattccacat acggcagctc
      541 catcagcggc gcgatttcgc gttcgtagta ctcacggtcc gctgagtcca ccttcgccgc
      601 gatcttgatt ttcatcccgc aacggccggc aatccggatg gcggtatcga cgcgtttttc
      661 cggcgatata cgcccaagga acgccaggta cgtctgctcg accggctgcg gcatgtagcg
      721 cgtttccggc aacccgtgat agacggtagt cagccatttg gcctgcggca acggatgacg
      781 ttgcgcgtcc gaaatggaga tgaccggggc ggtatcgaac gtgttgaaga tcggctgctg
      841 ttccggcaaa tcaagccggc cgtgcagcgt ggtaacgaac ggcgtgtcct ggcgtttgaa
      901 cagcgagaac gagtagtaat ccatgtggaa atgcagcacg tcgaaatcgt ccgcgcggcg
      961 ccgcaccatt tccatcagca gcatatgcgg ggcgatccgg tcgcggatag ccgggtccag
     1021 gcgcaacgcg cgcggccata cagcttccag cttcgctttg gtttgcgagt cacctgaagc
     1081 gaacagggtc acgtcgtggc caagttcaac cagcgcctcg gtgatatacg aaacaacccg
     1141 ttcagtgccg ccatacagct tgggcggcac tgattcggtc aacggggcta tttgtgcaat
     1201 tctcattgtt cgcgtctcca ctcggtctta cgtcgccgtg atgtttagtc ggtgatagtg
     1261 atcggcacgg gcgccggtcg acctcgcgcg cgatgttgaa aggcaaggcg cgcgagtacg
     1321 acaccgtatt attggccgtg gaagcccagt tgttggcaaa actttcactt tcacgaccct
     1381 gttacagtcg cgaaacactc gaatatcgtc gaattcttgc ggttttcagg ccgatatccg
     1441 gttggcgggc agcgttttaa atcggcgctg catgtgttgt tatttgttgc tcgccggtcg
     1501 tttgttgggc tgtttgttca atttcacgcc ccgcaggtcg gcgagaaacg agtcgcgcca
     1561 cacgcccagg tcgtatttgc ggagcattac catgttggtt tcgtagcgct cgcggcgttc
     1621 ggcgagcggc atggagagcg cgcgtccaat cgcctcgctc atgccaacta tgtcgtgcgg
     1681 attcaccatc agcgcgccct tcatttcgtc ggcggcgccc gcgaactggg acagcacgag
     1741 cacgccgggg tcgtcgggat tttgcgccgc gacatattcc ttggcgacca gattcatgcc
     1801 gtcgcgtaac ggcgtaacca gcccgatctg cgactcgcga aacagcgaca tcagcttcca
     1861 tcggtcgtaa cgctggttca tatagcgaat cggcgtgtag tcgaggcccg agtaacggcc
     1921 gttgatacgt cctgcttcgt attccaggtt atggcggatc tgctggtagg tatccacgtc
     1981 cgagcgcgtg ggcggcgcga tctgcaccag cgtgacattg ccccgccatt ccggcgattt
     2041 ttcgaggaaa tgctcgaacg ccttgaagcg ctcgaccaga ccctttgaat agtccagccg
     2101 gtccacgctc atgatgagct tgcggccttc caggctctgc ttcaggtcca tcacgtcctg
     2161 acgcgcttcg ccgcgggtgg cttgctcggc gatctcatcg gggaagatgc cgatgcggta
     2221 cacgccggtc ttaagccggc gtccgaacgc ttccacttcg ccatcggccg tggctgttcc
     2281 atgtgcgtga cgcacgatgt aatcgtggaa agcagcctgg tcgccgggag tctggaaacc
     2341 cactacgtca tagcagcaca gcgacttgac gagttcctcg tgcggcggaa tgttgagcag
     2401 gatctgcggt gacgggaaag ggatatgcag gaaaaagccc atccggttgg tcacgccttc
     2461 cgaacgcagc gcctcgccaa acgggatcag gtgatagtcg tggacccaga tgacgtcatc
     2521 gggttgcagc agcttgattg cgcgatgcgc cagccacgaa ttgacgcgtc tgtatcccgc
     2581 gtattcgtcg cggtcgtaga cggccaggtc gttgcgataa tggaagacag gccataaggt
     2641 cgcgttcgaa aaaccgcggt aatactggtc gtagtctttc ttcggcaaac ccacggtggc
     2701 gaatgtgact gcgccgtcct gttcgagttt cggtccctgg ttcgccacgc tgtcgctgac
     2761 tacgtcgccg ctccagccga accagacgcc gccgctgtcc ttcagcgcgc cgaagacgcc
     2821 cacggcgagc ccgccggccg agcctttggt ttccgtcgga gaggctactc ggttcgatac
     2881 gacgactagg cgggtcatta ctggcttcct tttttgcgat tctgttcagg gtgtgtgtat
     2941 tttttgcatg gccgcctacg tgcgtgggtc gcggccgttt attttttgtc gatgatcctc
     3001 gttcgtctcc gggcaacggc ctcagttcaa tttcattgtc atgttcttca atgcccggcc
     3061 gtgcttggtg gccccgccgc atggtctctc actgtcgctt aggctgagct tgtccgcaat
     3121 ctcaatgcca ccgtccggct cagcgccggt cagcgggttt cgccgcgccg ccgccgggcg
     3181 cgctcggggc ggtgctcgcc gctgaattca ccgatgcgtc cgggccgtgc cgctct
//
LOCUS       DATGBK010001296         2474 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_339391, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001296 DATGBK010000000
VERSION     DATGBK010001296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339391"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..908
                     /gene="groEL"
                     /locus_tag="VKJ77_18125"
     CDS             <1..908
                     /gene="groEL"
                     /locus_tag="VKJ77_18125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006760091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HMC47240.1"
                     /translation="PLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKALL
                     EDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTIVIDGAGDTKNIQARVK
                     QIRVQIEEASSDYDREKLQERVAKLAGGVAVIKVGGATEIEVKEKKDRVDDALHATRA
                     AVEEGIVPGGGVALIRVKQAISGLKGANADQDAGVKIVLRALEEPLRQIVTNAGEEAS
                     VVVARVAEGTGNFGYNAQTGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATV
                     TEAPKNAAPATSAGGPGAGGPGFDF"
     gene            1090..2037
                     /locus_tag="VKJ77_18130"
     CDS             1090..2037
                     /locus_tag="VKJ77_18130"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-isomer specific 2-hydroxyacid dehydrogenase
                     family protein"
                     /protein_id="HMC47241.1"
                     /translation="MVTIASQLAEPFNDAVRALLPDVRVVGIPRGVPAELPDEASILV
                     AAPILIRGAQAPEHAPAGWPFGLRWVQLGSSGIDFYPRWFFEGIPVTTARGTSSTAIA
                     EFALAAIFAHAKRLPDIWIHDAQQWALTPLATVQGSTVGIFGFGSIGQALAQKALALG
                     AQVIAVRRQSSTAPGLPGVTLVADIGDLVRGADHLVLAAPATSATRHIVNRELLAQAK
                     PGLHVINVARGSLIDNEALLEALGDGRIDAASLDVTEPEPLPAEHPFYTHPRIRLSPH
                     TSAIGPHNAAELAAKFARNFSAFTLGTSLEDLVDIHRGY"
     gene            2343..>2474
                     /locus_tag="VKJ77_18135"
     CDS             2343..>2474
                     /locus_tag="VKJ77_18135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC47242.1"
                     /translation="MKIFQILLLAGIVQLAAVSTAFAADDLASIKSAGVIKIGTEGTY
                     "
BASE COUNT          528 a          746 c          733 g          467 t
ORIGIN      
        1 ggccgctgct gatcatcgcg gaagacgttg agggcgaagc gctcgcgacg ctcgtcgtca
       61 acaacatccg tggcattctt aagacggtcg cagtcaaggc gccaggcttt ggcgaccgcc
      121 gcaaggcact cctcgaagac atcgccatcc tgaccggcgg ccaggtgatc gctgaagaaa
      181 ccggcctcac gctggaaaaa gcgacattgg cggaattggg ccaggccaag cgcattgaag
      241 tgggcaagga aaacaccatc gtgatcgacg gcgccggaga tacgaaaaat atccaggcac
      301 gcgtcaagca gatccgcgtg cagatcgaag aagcaagttc cgactacgac cgcgaaaagc
      361 tgcaggagcg tgtcgcgaaa ctggccggcg gcgtggcggt gatcaaggtg ggcggtgcga
      421 ccgagatcga ggtcaaggag aagaaggacc gcgttgacga tgcgttgcac gcgacgcgtg
      481 cggcagtcga agaaggtatc gtgccgggtg gcggcgtcgc gctgatccgc gtcaagcagg
      541 caatcagcgg cctgaagggc gccaatgcgg accaggacgc cggcgtgaag atcgtgctgc
      601 gagcattgga agaaccgctg cgccagatcg tcacgaatgc cggtgaggaa gcaagcgtgg
      661 ttgtcgcgag ggtcgccgag ggcacgggta actttggcta caacgcgcag accggtgaat
      721 atggcgatct ggtcgaatcg ggtgtgctcg atccgaccaa ggtcacgcgc accgcgctgc
      781 aaaacgcggc atcaatcgcg ggcttgctgc tcacgaccga tgcaacggta acggaagcgc
      841 cgaaaaacgc ggcccctgct acgtctgctg gcggaccggg tgcgggtgga ccgggattcg
      901 atttctgagg cttttccatc gatacgcacg tcggcgcttc ccgtttcaga cgctccgacg
      961 tgcgctccgg attcactaca caatgctttg cttcgttgta cgcttcctca atcttatctt
     1021 catgcagtcc ttaccaaccc tttcgctccc catgcgcgag catgccctcg cctcccgttc
     1081 taaaaaccca tggtcacaat agccagccag ctcgccgaac cgttcaatga tgcagtgcgt
     1141 gcactgctgc ctgatgttcg ggtagtaggt attccccgag gggtgccggc cgaactacct
     1201 gacgaagcgt cgatcctggt cgccgcgccg atcctcatac ggggcgcaca ggcaccggag
     1261 catgccccgg ccgggtggcc atttgggctg cgttgggtgc aactcggttc atcggggatc
     1321 gacttttatc cgcgctggtt cttcgaggga atacccgtta ccaccgcgcg cggcacctcc
     1381 tcaacagcga ttgccgaatt cgcattggca gcaatctttg cccacgcgaa acgcctgccg
     1441 gacatctgga ttcacgacgc acagcagtgg gcattgacgc cactcgcaac agtgcaaggc
     1501 agcaccgttg gcatattcgg cttcggttcg atcgggcagg cgcttgcgca gaaagcgctc
     1561 gcgctcggcg cccaggtcat tgcggtgcgg cgtcaaagtt ctaccgcgcc gggcctgccg
     1621 ggcgtcacgc tcgttgccga tatcggagac ctggtgcgag gagcagacca tctcgtactc
     1681 gcggcgccgg ctacttcagc aacccgccat atcgtcaatc gggaattgct tgctcaagcg
     1741 aagccgggac tacacgtgat caatgtcgca cgtggttcac taatcgacaa cgaggcattg
     1801 cttgaggcgc tcggcgatgg ccgtattgat gcagcatcgc tcgacgtcac cgagcccgag
     1861 ccgctgccgg ctgagcatcc gttctacaca catccgcgca tccgcctctc gccacacacg
     1921 tcggcgatcg gcccgcacaa tgcggccgaa ctggccgcca agttcgcgcg caatttcagc
     1981 gcctttactc tgggtacgtc gctggaagat ctcgtcgata tccaccgggg ctactagatg
     2041 ctgcgcttga cgatgccggc aagcgcagca atgagccccc ggagaatgcg ttgccaacgg
     2101 tctggacatg cacacacagg cctgctctgc ggtaaccaaa tatataaagc atcaaggcga
     2161 agagggaatt ccgtctccgc ttaacaaacg actcgcgccg ccgttattcg atccagacat
     2221 atccttcgac atcaatatgc tttgtgaaac taaaccccct tgttacagtc gcgccgaagc
     2281 gtttcgtcat cgctcgtcga agatgaaata gacaatagat aaatcctaag gagtcgcccg
     2341 tcatgaaaat tttccaaata ttgctgctgg ccggcatcgt acagttggct gctgtatcca
     2401 ctgccttcgc agccgacgat ctcgcaagca tcaagagcgc tggtgtcatc aagatcggca
     2461 ctgaaggtac ttac
//
LOCUS       DATGBK010001297         1715 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_177329, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001297 DATGBK010000000
VERSION     DATGBK010001297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177329"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VKJ77_18140"
     CDS             complement(<1..248)
                     /locus_tag="VKJ77_18140"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="catalyzes the formation of L-tryptophan from
                     L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Derived
                     by automated computational analysis using gene prediction
                     method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HMC47243.1"
                     /translation="MHKPDDRGYFGKFGGKFVPEVLIEALAQLERAMNEAFADASFWD
                     EYHTILRDFVGRPSPVYEATRLLDGSGAKIVFKREDLN"
     gene            complement(235..873)
                     /locus_tag="VKJ77_18145"
     CDS             complement(235..873)
                     /locus_tag="VKJ77_18145"
                     /inference="COORDINATES: protein motif:HMM:NF012900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HMC47244.1"
                     /translation="MRTRIKFCGCTSVRDAELAIDAGADAIGVIFAASSPRRASIEIA
                     REIAAAVPPYIQLVGVFVDPERELVAEARSAGYVAQFSGSEPASLTESVAGRPYLKVY
                     HVRPGDEPTPEAFEASARAYTHATWMFEPKVHGMDGGTGQTFRWDLARALAGGRRFVI
                     SGGLTPENVGDCVLSVRPYAVDVRSGIETNNAKDVEKMRAFVRAVREADAQA"
     gene            complement(870..1667)
                     /gene="trpC"
                     /locus_tag="VKJ77_18150"
     CDS             complement(870..1667)
                     /gene="trpC"
                     /locus_tag="VKJ77_18150"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: protein motif:HMM:NF001377.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HMC47245.1"
                     /translation="MDILDKLYAAKAVVREADEKREPLPVVRERAMDRVLERRHFGEA
                     LRGSRGSAIIAEIKRASPSAGMIVRQIDPAQIAKEYEAAGADAISVLTEADHFLGDLA
                     YIDVARNAARLPILRKDFLSTRYDVAQSAAYGADAVLAIVAGLTDEQIADMMDEASRY
                     ALDVLVEVHDEEELARAVLAGATLLGINNRDLRTFETNLAVTEELLPLVPAGIIAISE
                     SGVRTQEDTRWLSDAGARGFLVGETLMRSEDKAAMVRALKGPVPAKA"
BASE COUNT          338 a          572 c          473 g          332 t
ORIGIN      
        1 tgattgagat cttcgcgctt aaaaacaatc ttcgcgccgg acccatccaa taaccgggtc
       61 gcttcgtaca ccggcgatgg acggccgaca aagtcgcgca atatcgtatg atactcatcc
      121 cagaacgacg cgtcggcaaa cgcttcattc atcgcacgct cgagctgcgc gagcgcttca
      181 atcagcactt cgggaacgaa cttgccgcca aattttccga agtatccgcg atcgtcaggc
      241 ttgtgcatca gcttccctta cggcgcgcac gaacgcacgc attttttcca cgtctttggc
      301 gttgttcgtc tcgattcccg aacgaacatc aacggcgtag ggacggacgc tcagtacgca
      361 gtccccgacg ttctccggcg tcaaaccgcc actgatgaca aaacgccggc cacccgccag
      421 cgcgcgcgcc aaatcccacc gaaacgtctg gcccgtgccg ccgtccatac cgtgtacttt
      481 gggctcgaac atccaggtcg catgcgtata cgcacgggcg ctcgcctcaa acgcctcagg
      541 cgtcggttca tcgccgggcc gaacgtgata caccttgaga tacggcctgc ctgcaacgga
      601 ctcggttagg ctcgcgggct cgctgccgct gaactgcgcg acgtagccgg ccgatcgcgc
      661 ttctgccacg agctcccgtt cgggatcgac aaaaacaccg accagctgga tgtacggagg
      721 cacggccgca gcaatttccc gcgcgatctc gatcgaggct cggcgtggac tggatgctgc
      781 aaaaatgacg ccgatcgcat cggcgccggc gtcgatggcc agctccgcgt cgcgaacgct
      841 cgtgcatccg cagaacttga tccgcgttct cacgcctttg ccggcaccgg ccctttgagc
      901 gcgcgaacca tcgccgcttt gtcttccgag cgcatcaacg tttcaccaac gagaaatccg
      961 cgcgcgccgg catcggataa ccagcgcgta tcttcttgcg tacgcacgcc gctctcgctg
     1021 atggcgataa tcccggcggg aacgagcggc aataactctt cggtcactgc caggttcgtc
     1081 tcaaacgtgc gcaaatcgcg gttgttaatc ccgagcagtg tcgcgccggc gagcaccgct
     1141 cgcgcaagtt cttcttcgtc gtgcacctct acgagaacat cgagcgcgta gcgtgaggct
     1201 tcatccatca tatccgcgat ctgctcgtcg gtcaggccgg cgacgatcgc aagcacggca
     1261 tccgcaccgt aggcggcgga ctgcgcgaca tcgtagcgcg tcgaaagaaa atctttgcga
     1321 agaatcggca accgcgcggc gttgcgcgca acatcgatgt acgcaagatc tcctaagaaa
     1381 tgatcggctt cggtcagcac gctaattgca tcggccccgg cggcttcgta ttcttttgcg
     1441 atctgcgcgg gatcgatctg ccggacgatc atgccggccg acggcgacgc tcgcttgatc
     1501 tcggcaataa tggccgaacc gcgcgaaccg cgtaacgcct caccaaagtg gcggcgttcg
     1561 agcacgcgat ccatcgcgcg ttcgcggacg acgggcaacg gctcgcgttt ttcgtcggcc
     1621 tcgcgcacca cagcttttgc cgcgtacagc ttgtccagaa tatccatgct aggcatactc
     1681 catctcatgc tcggtacgta acgcctctag cgccg
//
LOCUS       DATGBK010001298         3156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_154159, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001298 DATGBK010000000
VERSION     DATGBK010001298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154159"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            263..1564
                     /locus_tag="VKJ77_18155"
     CDS             263..1564
                     /locus_tag="VKJ77_18155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HMC47246.1"
                     /translation="MTETIWFLVVGGVLILMGLANSTFKQLPISTAMVYLAIGFGLGP
                     FGIGLLKIDLLGDATLLRRITEVAMLVSLFAIGLRLRVPPTDRIWLLPVRLGIVAMVA
                     TVAIMTLAGVYLLHMNWGPALLIAAMLAPTDPVLAHDVQVQVPGDVDLLRFSLTGEGG
                     LNDGIALPFALLGIAVCNYEASPQQALSWHFASDALWGVAGALAVGWLLGDLAVRLIA
                     WLRSRHGLALGPEGFYALGLIALAYGVAELIHTYAFLAVFAAGLAMRRVEQKASGDKS
                     AHEAVGVIDTEDVGATASDPDRAHAFVAERILGFTIELERIAEVAIMLMVGSVLANVW
                     DRLFTWQGAAVVGLLFFVARPLSVQASLLGSSATRSQRLLTSWFGIRGVGSFYYLMYA
                     LEHAPRSVAEPLAPLVLGVIAASVILHGITSTPLMNRYGRS"
     gene            complement(1669..2778)
                     /locus_tag="VKJ77_18160"
     CDS             complement(1669..2778)
                     /locus_tag="VKJ77_18160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HMC47247.1"
                     /translation="MKIALIGAGLIGQSIAHLLRETGDYDVVVFDRDAHALELLEAQG
                     ISTRRVDSADANALRLALQGFDALLNAMPYYLAVTVATAAKAAGVHYFDLTEDVRATH
                     AIREIADNSSHAFMPQCGLAPGFIGIVAHDLAKRFAEVREVKMRVGALPEFPTNALKY
                     NLTWSIDGLINEYCQPCEAIRDGSTQWVQPLEGLEHFSLDGTEYEAFNTSGGLGTLCE
                     TLAGKVETLDYKSVRYPGHRELMKFLLDDLRMSSDRDGLKAMLRRAVPATVQDVVLVF
                     VTATGMRDGRLMQDVFTRKIFAKNICGVPMSAIQITTAGAICAELDLFREGVLPQSGF
                     IRQEQVPLEAFLANRFGQLYEGASTLGVVRQLQAA"
     gene            complement(2953..>3156)
                     /locus_tag="VKJ77_18165"
     CDS             complement(2953..>3156)
                     /locus_tag="VKJ77_18165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HMC47248.1"
                     /translation="VQKRFARMPEMQLLCAVSGEFDYVAWLRADSPDRLNDLLDEIGG
                     LEGVERTTTSIILARKVDRGGLG"
BASE COUNT          575 a          966 c          948 g          667 t
ORIGIN      
        1 ggtgccacgc tggcgcatca ttgtgcccga gccagcgtgc tgcgcggcgc gcgggtgcgc
       61 gcgagttgcc accaggttgg cgaacaaagc ccatgcattg cacgcggcga aactcgttcg
      121 ccaactggca tcgcacgcgg agcatctaac ccagccatcc acttcgctcc gcgccctctg
      181 ccgggctctt aaaacagcgc acgcggattg gtggcatgcc tcttgctgct gttcgggtaa
      241 gttgcattca tctcaggctc tcatgaccga aacgatatgg tttctcgtcg ttggcggtgt
      301 tctcattctc atggggcttg ccaattcgac gttcaaacaa ctgccgatca gcaccgccat
      361 ggtgtatctc gccattggtt tcgggctggg tccgtttggc atcggcctgc tgaagatcga
      421 tctgctgggc gacgccaccc tgctgcgccg gattaccgaa gtcgccatgc tcgtgtcgct
      481 gttcgcgatc gggctgcgcc tgcgcgtgcc gcccaccgac cgcatttggc tattgcccgt
      541 gcgcctcggg attgtcgcga tggtggcaac ggtcgccatc atgacgctgg caggagtcta
      601 tctcctgcat atgaactggg gacctgcgct actcatcgcc gcgatgctcg cccccaccga
      661 tccagtgctc gctcatgacg tgcaagtgca ggttcccggc gatgtcgact tgctgcgctt
      721 ttcgctcacc ggcgaaggcg gtttgaacga cggcattgcg ctgccgtttg cgttgctggg
      781 aatcgcggta tgcaactacg aggcatcgcc acagcaggcg ctgagctggc atttcgccag
      841 cgatgccctc tggggtgtcg ccggtgcgtt ggccgtgggc tggttgctgg gagacctcgc
      901 cgtgcggttg attgcgtggt tacgtagtcg ccatggcctg gcccttggcc ccgaaggatt
      961 ttatgcgctg ggcttgatcg cgctcgcgta tggcgtcgcc gaattgatcc acacgtacgc
     1021 gttcctggcc gtgttcgcag cgggcctcgc gatgcggcgc gtcgagcaaa aggccagcgg
     1081 ggacaagtcg gcacacgaag cggttggtgt catcgatacc gaggacgtcg gcgcgaccgc
     1141 ctccgatcct gaccgtgcgc acgcgtttgt cgcggaacgg atactcggct tcaccataga
     1201 actcgagcga atagcggaag tcgccatcat gctgatggtg ggcagcgtac tcgccaatgt
     1261 ttgggatcgg ctatttacgt ggcaaggcgc tgcggtggtc gggctattgt ttttcgtagc
     1321 gcgtccgctg tcggtgcagg cttcgctgct ggggtcatcg gcgacgcgct cgcaacgctt
     1381 gctcaccagt tggttcggga ttcgcggcgt tgggtcgttt tattacctga tgtacgcact
     1441 ggagcatgcg cctcgcagcg ttgctgaacc acttgcgccg ctggtgctgg gagtgatcgc
     1501 ggcgtcggtg atcctgcatg ggattacatc gacgccgctg atgaatcgat acgggagaag
     1561 ttgatctgcc gatccaatgg ggttggtcag gcaaaagaga tcgatgaccg ctcgcttcgc
     1621 cccgcgctca taaccagcag accgcggggc atcatcgcga gcgaagcctc aggcggcctg
     1681 gagttgccgg acaacgccca gcgtgctcgc gccctcgtac aactgtccga accggttcgc
     1741 caagaacgct tcaagcggca cctgttcctg ccgaatgaaa ccgctctgcg gcaacacacc
     1801 ttcgcgaaac agatcgagtt ccgcgcagat cgcgccggcg gtcgtgatct ggatcgcgct
     1861 cattggcacg ccgcatatgt tcttcgcgaa gatcttgcgc gtgaacacat cctgcatgag
     1921 gcgcccgtcg cgcattcccg tagcggtgac gaataccagc accacgtcct gcaccgtagc
     1981 cggtactgca cggcgcaaca tcgccttcaa tccgtcgcga tcactcgaca tgcgcaaatc
     2041 gtcgagcagg aacttcatca gctcgcgatg ccccggataa cgcaccgact tgtaatccag
     2101 cgtttccacc ttgccggcca gcgtttcgca tagcgtaccc agtccacccg atgtattgaa
     2161 cgcctcgtat tcggtgccat cgagtgaaaa atgctccagc ccttccagcg gctgcaccca
     2221 ttgcgtactg ccgtcgcgga tagcctcgca cggctggcaa tactcgttga tcaggccatc
     2281 gatgctccag gtcaggttgt atttcaatgc gttggtcgga aactcaggca atgcgccaac
     2341 ccgcatcttg acctcgcgca cctcggcgaa gcgcttcgcc aggtcgtgcg ccacgatgcc
     2401 gataaacccc ggcgccaaac cgcattgcgg catgaaggcg tggctggaat tgtcggcgat
     2461 ctcgcggatc gcgtgcgtcg cccgcacgtc ttcagtcagg tcgaagtaat gcacgccggc
     2521 cgctttcgcc gccgtagcga cggtcacggc gaggtaatac ggcatcgcgt tgaggagtgc
     2581 gtcgaagcct tgcagcgcaa gacgcagtgc atttgcatcg gcggaatcga cgcggcgagt
     2641 ggaaataccc tgcgcttcaa gcagttcgag cgcgtgggca tcgcggtcga aaacgaccac
     2701 gtcgtagtcg ccggtttcac gcagcaaatg agcaatgctc tggccaatca ggccggcgcc
     2761 gatgagggct attttcatgt ttatctcctg gataggcggt cgagaggcaa atctccgacc
     2821 cccagtttag gagcgcatga atattgataa aagacacaaa atgatgcgaa tcgactatcg
     2881 atttcgacgt tttgacgatc tcacacgaca gattgtacga aatcgttctg ctagccctgc
     2941 cgaatgggcc ttttaaccca agccgccgcg atccaccttg cgggcaagaa tgatcgaggt
     3001 cgtggtgcgt tcaacgcctt ccaggccacc gatttcatcg agtagatcgt tcagccggtc
     3061 cggggaatcc gcgcgcagcc acgcgacata atcgaactct ccgctcactg cgcaaaggag
     3121 ttgcatctcg ggcatcctgg cgaagcgctt ctgcac
//
LOCUS       DATGBK010001299         2003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_62217, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001299 DATGBK010000000
VERSION     DATGBK010001299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62217"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(325..1884)
                     /locus_tag="VKJ77_18170"
     CDS             complement(325..1884)
                     /locus_tag="VKJ77_18170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011660298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC47249.1"
                     /translation="MRKHMTIRGGLVATIAVYTVLLIAVIAVGILGLYGSNSALREMY
                     RDDTASVLHLKTSSERLLLLRAGFGEVEQLISAGKPAQSEIARQHALLDESNKELEAF
                     RKLHEPALAEKALIDAMQARREQLLAQVFQKALTELDQDNLVDFLTTQREAPPELFSD
                     YQNALTALENFQVERQKARFDTTDARFEAMLWTLGAAAVVALVIGFFAQRILTRAIVR
                     PIDMAVDYFGRISAGDLTSTVTVQRNNEMGYMLNALKGMQEGLAQTVRKVRSSAETIV
                     RDAHAISGGNLDLSARTEQQAASLQEAASSMEQLTATVRQNADNARNASELAAGASDI
                     ALRGGDVVNRVVATMDAISGSSDKIVGIVSVIEGIAFQTNILALNAAVEAARAGEQGR
                     GFAVVASEVRSLAQRSASAAKEIKELIGTSALSVKDGSQLVAHAGATMVEVVEAVRRV
                     SAIMAEISLASGEQTTGIEQVNVTVAQMEEMTQQNSALVEEASAAAVSLEEQSKQLND
                     AVALFRLKAIA"
BASE COUNT          390 a          632 c          552 g          429 t
ORIGIN      
        1 gtcgtcgcgc aaatgcgcct gcgcgacagc ccgaaacgcg atcgccgcca agcggaaatt
       61 cgcgattcag tgcgactgta tgggaaccga tatgtatata caagtccgct attatcgatg
      121 tttaccccta accgtaattg accaaaactc aggtgatatc ggtttaaacg tctttaaatc
      181 aacgcgttga tcttaatttt tgctgccggg catgtgcttc atatcagtgg ccatttttta
      241 tatatgtata gacaagatgt aagataacat tttgtctagc tggcgctccc tcatcgctta
      301 gcgagaacgc tgaaaaccgg attttcacgc aatagctttc agccggaaca gcgctactgc
      361 atcgttcaac tgcttactct gttcctccag cgaaaccgca gcagccgacg cctcttccac
      421 cagcgccgag ttctgctgcg tcatctcttc catttgcgcc accgtcacgt tgacctgttc
      481 gatgcccgta gtttgctcgc ccgaagccag gctgatctcc gccatgatcg cgctcacgcg
      541 cctgaccgct tccacaacct ccaccatggt cgcgcccgcg tgggccacga gctggctacc
      601 gtccttcaca ctcaacgctg acgtaccaat caattccttg atctccttcg ccgccgatgc
      661 cgaacgttgc gccaggcttc gcacttcgct cgcaacgacc gcgaaacccc ggccttgctc
      721 gccggcccgc gcggcttcca cggccgcatt caacgcgagg atgttggtct ggaacgcaat
      781 cccttcaatc acgctgacaa tgcccacgat cttgtcggag ctacccgaga ttgcgtccat
      841 ggtcgcgacc acgcggttca ccacatcccc gccgcgcaac gcgatgtcag atgcgcccgc
      901 agcaagttcg ctggcgttgc gcgcgttgtc ggcgttctgc ctgacggtag cggtcaactg
      961 ctccatgctc gatgcagctt cctgaagcga ggcagcctgt tgctccgtgc gcgccgacag
     1021 atcgagattg ccgcccgaga tggcgtgggc gtcacgcacg atagtctccg cgctcgaacg
     1081 cactttgcgc acggtctggg cgagtccctc ctgcatgccc ttcaacgcgt tgagcatgta
     1141 gcccatctcg ttgttgcgct ggaccgtcac ggtgctggtc aggtcgccgg ccgagatccg
     1201 gccgaaataa tcgacggcca tatcaatcgg ccgcacgatc gcccgggtca atatcctctg
     1261 cgcgaagaaa ccgatgacga gggcgacgac cgcggcggca ccgagcgtcc agagcatggc
     1321 ttcgaaacgt gcgtcggtgg tgtcgaagcg tgctttctgg cgttcgacct ggaagttttc
     1381 cagagcggtc agcgcattct gatagtcaga gaacagctcg ggcggcgctt cccgctgggt
     1441 ggtgaggaaa tccaccagat tgtcctgatc gagctcggtt agcgccttct ggaacacctg
     1501 ggccagcagt tgctcgcgcc gagcctgcat tgcgtcgata agcgccttct ccgccagcgc
     1561 cggctcgtga agcttccgaa aagcttccag ttccttgttg ctctcgtcga gaagcgcatg
     1621 ctgccgggcg atttcgctct gggcgggctt gccggcgctg atcagctgct cgacttcgcc
     1681 aaacccggca cgcagcaaca gcaagcgctc cgagctggtt ttaaggtgca gcacggaagc
     1741 ggtatcgtcg cgatacatct ctctgagcgc cgaattgctg ccgtacagac ccaggatacc
     1801 cacggcgatg accgcaatga gcaagacggt gtatacggcg atcgtcgcga ccaggccgcc
     1861 gcgaatggtc atgtgtttgc gcataagggc tagtccccac tgcgtcgctg tagtacgcgg
     1921 cgcaacaggt ctgtatcctc cggacatctg gggcgaaccg tgaagggaac cactggaatc
     1981 aagcgtcgat tgatcagata acg
//
LOCUS       DATGBK010001300         2498 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_84725, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001300 DATGBK010000000
VERSION     DATGBK010001300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2498
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84725"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1020
                     /locus_tag="VKJ77_18175"
     CDS             <1..1020
                     /locus_tag="VKJ77_18175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC47250.1"
                     /translation="VLPWRLMAWLALFAVVCYSLLTVSYVPLNMEDPLNLFEYFRIGL
                     WVNFMVSVGLIGWFVARMSRALRARDFALADAQERLLRDERAVALGVQAATVAHEIGT
                     PLSTIAMLSEELRDSARHDPHLAPYCADIELLEQQMTLCTSALARLRSRATEPAPRQP
                     LDDWLHGFVEQWRLRHPHVRFELIESEDEAEDKAEEHKRAGLFLSDPVAVGQILTILL
                     DNAARASSDSVTLMTSASRHLGEPVIQFDVRDQGPGIPAALRGSLGAMPVDSTQGGHG
                     VGLYLAFSAATRLGGSIELTPASPHGTHAILRLADSSAPESREKAARTGRGGVAASVT
                     TEKRA"
     gene            1017..1559
                     /locus_tag="VKJ77_18180"
     CDS             1017..1559
                     /locus_tag="VKJ77_18180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC47251.1"
                     /translation="MSDTNFLVIDDDEVFSGILARGLTRRGYTPHQAHDAATALRLAN
                     TQKFGQITVDLHLGNDSGLTLVAPLRDLQPDARILVLTGYASIATAVQAVKDGADNYL
                     AKPANVETILSALQEEASEQTAEEAIEHPALLSVARLEWEHIQRVLAENSGNISATAR
                     ALNMHRRTLQRKLAKKPVRQ"
     gene            complement(1643..>2498)
                     /gene="hslU"
                     /locus_tag="VKJ77_18185"
     CDS             complement(1643..>2498)
                     /gene="hslU"
                     /locus_tag="VKJ77_18185"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013586837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HMC47252.1"
                     /translation="RKRLREGLLDDKEVEIDIEASQPSMDIMGPPGMEEMTDQIRSMF
                     ANIGGGKKTQRKVKVKDALKLLTDEEAGKLLNDDEVKTKAIQNVEQNGIVFLDEIDKI
                     ASRSETGGAEVSRAGVQRDLLPLVEGTTINTKYGMIKTDHILFIASGAFHLAKPSDLI
                     PELQGRFPIRVELDSLSVEDFESILNTTDASLVKQYTALLATEDVELAFSADGIRRMA
                     EIAFSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHTGHPVNIDAAYVDKALNDVAED
                     EDLSRYVL"
BASE COUNT          463 a          754 c          767 g          514 t
ORIGIN      
        1 gtgctgccgt ggcggctgat ggcctggctc gcgttgttcg cggtcgtctg ttattcgttg
       61 ctgacggtca gctacgtgcc gctgaacatg gaagatccgc tgaatttgtt cgaatatttc
      121 cgcattgggc tgtgggtgaa tttcatggtc agcgtggggt tgatcggctg gttcgtggcg
      181 cggatgtcac gggcgctgcg cgcgcgggat tttgcgctgg ccgatgccca ggagcggctt
      241 ctgcgcgacg agcgcgccgt ggcgctgggt gtccaggcgg caacggtcgc acacgaaatc
      301 ggcacgccgc tgtcgaccat cgcgatgctg agcgaggagt tacgcgattc cgctcgtcac
      361 gacccgcatc tcgcccctta ttgcgccgat atcgaactcc tcgagcagca aatgacgttg
      421 tgcacgtccg cgctcgcgcg cctgcgcagt cgcgcgactg agcccgcgcc gcggcaaccg
      481 ctggatgact ggctgcatgg gtttgtcgaa caatggcggc tgcgccatcc gcacgtgcgt
      541 ttcgagttga ttgagtcgga agatgaagcg gaggataaag cggaggagca caagcgcgcg
      601 gggctgtttc tcagcgatcc cgtcgcggta gggcaaatac tgaccattct gctggataat
      661 gcggcgcggg ccagcagcga ttcggtgacg ctgatgacgt cggcgagccg gcatcttggc
      721 gagcccgtga ttcaattcga tgtccgagat cagggccccg gcattccggc ggcattgcgg
      781 ggttcgctcg gcgcgatgcc cgtcgatagt acgcagggcg gccacggtgt cggcttgtat
      841 ctggcattct cagcggcaac gcggcttggc gggtctatcg agctcacgcc agccagcccg
      901 cacggtacgc acgccatcct gcgtctcgcc gactcaagcg cccccgaatc gcgggaaaaa
      961 gcagcaagga cgggccgcgg cggcgtcgcc gcttccgtca ctacggagaa aagagcatga
     1021 gcgatacaaa ttttttggtc atcgacgacg atgaggtctt ctcgggcatc ctcgcgcgcg
     1081 gactgacgcg ccgcggctat acgccgcatc aggcgcacga cgccgccacg gcgttgcgat
     1141 tggcgaacac gcagaagttt ggccagatca ccgtcgacct gcacctcggc aacgattccg
     1201 ggttgacgct tgtcgccccc ttgcgcgatc ttcaacccga tgcgcgaatt ctcgtgctaa
     1261 cgggttatgc gagcatcgcg acggcggttc aggccgtgaa ggacggcgcc gataattatc
     1321 tggccaagcc ggcgaacgtc gagacaatcc tgtccgcgct gcaggaggag gccagcgagc
     1381 agacggccga agaggctatc gagcacccgg cgctgctgtc ggtcgcgcgg ctggagtggg
     1441 agcatatcca gcgcgtgctg gccgagaaca gcggcaatat ttcagccacg gcgcgagcgt
     1501 tgaacatgca tcggcggaca ctgcagcgaa agctggcgaa gaaacccgtg cggcaataaa
     1561 cgttatgtag aacgtaaaag ggcggcttcc gatttcagcg aatgactgaa atcggaagcc
     1621 gccctgttct gattgaacgc ttttacagca cgtagcgcga caaatcctcg tcttcggcta
     1681 catcgttcaa cgctttatca acgtaagcgg cgtcgatatt caccggatga cccgtgtgat
     1741 tgcccgccgc gaacgacact tcttcgagca acttttcgat cacggtataa agccgccgtg
     1801 caccgatatt ctcggtcttc tcgttcactg aaaacgcaat ctcggccatc cggcgaatac
     1861 cgtccgcgct gaaagcgagc tcgacgtctt ccgttgccag gagtgccgtg tactgcttca
     1921 caagactggc atcggtcgta ttcagaatgg attcaaaatc ctccacggac agcgaatcca
     1981 gctcgacgcg aatcggaaaa cgcccttgca gttcggggat cagatcgctc ggcttggcca
     2041 gatggaacgc accgctggcg ataaacagga tgtgatcggt cttgatcatc ccgtatttcg
     2101 tattgatggt agtgccttcc acaagcggca gcaggtcgcg ctgcacaccg gcccgcgaca
     2161 cttccgcgcc acccgtctca ctgcgcgacg cgatcttgtc gatctcgtcc aggaacacaa
     2221 tgccgttctg ctcgacgttc tgaatggcct tcgtcttgac ctcgtcgtcg ttcagcagct
     2281 tgccagcttc ttcgtcggtg agcagcttca gcgcgtcctt gaccttcacc ttgcgctgcg
     2341 tcttcttgcc gccgccgata ttcgcaaaca tggaacggat ctggtcggtc atttcctcca
     2401 tgcccggcgg acccatgatg tccatgctgg gctgcgacgc ttcgatatcg atctccactt
     2461 ccttgtcgtc gagcaggcct tcgcgcaggc gcttgcgg
//
LOCUS       DATGBK010001301         5055 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_339449, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001301 DATGBK010000000
VERSION     DATGBK010001301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5055
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339449"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1608)
                     /gene="carB"
                     /locus_tag="VKJ77_18190"
     CDS             complement(<1..1608)
                     /gene="carB"
                     /locus_tag="VKJ77_18190"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HMC47253.1"
                     /translation="MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGYKV
                     ILVNSNPATIMTDPNTADVTYIEPITWEVVERIIDKERPDAILPTMGGQTALNCALDL
                     FHHGVLEKYKVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGIAHSMEEALQVQA
                     EIAALTGSGGYPTVIRPSFTLGGSGGGIAYNKEEFEEICRRGLDLSPTRELLIEESLL
                     GWKEFEMEVVRDTKDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNASL
                     AVLREIGVDTGGSNVQFAINPKDGRMVVIEMNPRVSRSSALASKATGFPIAKVAAKLA
                     VGYTLDELKNEITGGQTPASFEPTIDYVVTKIPRFAFEKFREADARLTTQMKSVGEVM
                     AIGRTFQESFQKALRGLEVGVDGLDEKTTSRDEVIREIGEPGPDRIWFLGDAFRLGLT
                     AEEIFEETAIDPWFLAQIEQIISKEKALSGRTIESLTKEEMLYLKQSGFSDRRLAKLL
                     GSDQTAVRKHRHALKVRPVYKRVDTCAA"
     gene            complement(1665..2804)
                     /gene="carA"
                     /locus_tag="VKJ77_18195"
     CDS             complement(1665..2804)
                     /gene="carA"
                     /locus_tag="VKJ77_18195"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HMC47254.1"
                     /translation="MLPSFSPAILALADGTVFRGHSIGASGHTIGEVVFNTAITGYQE
                     ILTDPSYAQQIVTLTYPHIGNVGVNAEDVESTKVHAAGLIIRDLPVLASNFRSEQSLA
                     DYLKAENVVAISNIDTRKLTRILRDKGAQNGCILAGDDEAKALELARSFPGLSGMDLA
                     KVVSTKEKYEWTQSEWRLESGYGEQKAPQYRVVAFDYGVKYNILRMLAERGCHVTVLP
                     AEATAADALALNPDGIFLSNGPGDPEPCDYAIRATREFIERGIPTFGICLGHQIMGLA
                     VGAKTMKMKTGHHGANHPVKDLENGRVVITSQNHGFAVDAATLPANAKVTHTSLFDGT
                     LQGFALTDKPAFCFQGHPEASPGPNDIAYLFDRFVGLMEAQKVAA"
     gene            complement(3169..4404)
                     /locus_tag="VKJ77_18200"
     CDS             complement(3169..4404)
                     /locus_tag="VKJ77_18200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47255.1"
                     /translation="MTSSVRLRVFFLFSAGYFVSYVFRGVNLGFAPYITHDLGLSGAD
                     LGLLTSLYFLGFAAAQIPVGMLLDRFGPRRVTAGMLLFAALGIGVFGEAHGIGAMMLG
                     RLLIGVGVSVCMSAAFKALAQILPVAQLPMVNGLVMAVGGLGGVVVGSPLAILLGVTD
                     WRNVCYGLVVMTLAVAAAIFLFAPEHRDGVHRKADMLTQFKGTWHILGSSVFWKIASF
                     SVVTQGVFYAMQSLWIRPYLLDVMGLSVQYAAVLVSVLGIAMMIGCVGFGVAARGLQK
                     RGVTVYAFCGFGMGLFVLVQVLMLVRAPIAPALLIACYGVFGGTGILSYAVMAEYFPT
                     HMIGRAHSTLTLVLFILIFGLQVGIGAMLSRWPARSGHYPVAAHLSVWGVLIALQTAS
                     AIWYVLPSSVLEKRGGVVS"
     gene            complement(4509..>5055)
                     /locus_tag="VKJ77_18205"
     CDS             complement(4509..>5055)
                     /locus_tag="VKJ77_18205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HMC47256.1"
                     /translation="NRIPAGMRLKAGSTIVVPRSDDDDEDISADVAESAMLAVEPDVP
                     DTRKMLIRVRRAQSMSTFADRYNVSISQVKSWNRTHRDSVMAGQLIVLHVPVGRAVPA
                     EPGPVRVETVAASSRNRGGVTKIGTHVPESKSTARGGKASAPAKVTRVTEKFSAPSKA
                     VKPEAVSKTAKTKSTDKKKKQ"
BASE COUNT         1002 a         1568 c         1480 g         1005 t
ORIGIN      
        1 agccgcgcac gtatccacgc gcttgtagac cggacgcacc ttcaatgcat gacgatgttt
       61 gcgcacagcc gtttgatcgg agccgagcaa cttcgccaga cgacgatccg agaaaccgct
      121 ctgcttcaga tacagcattt cctctttggt caggctctcg atcgtgcggc cgctcagcgc
      181 cttttccttc gagatgatct gttcgatctg cgcaaggaac cacgggtcga tcgccgtttc
      241 ttcaaagatc tcttcggctg tcaggccaag acggaacgcg tcgcccagga accagatacg
      301 gtccggaccc ggctcgccaa tttcgcgaat cacttcgtcg cggctggtag tcttttcatc
      361 gaggccatcg acgcccactt ccagcccgcg cagcgccttc tggaacgatt cctggaacgt
      421 gcggccaatg gccatcactt cgccgaccga cttcatttgc gtcgtcagac gcgcatcggc
      481 ttcgcggaat ttttcgaacg caaaacgcgg aatcttcgtg accacatagt cgatggtggg
      541 ttcgaacgat gccggcgtct gaccgcccgt gatctcgttc ttcagctcgt cgagcgtgta
      601 gcccacggcc agcttcgccg cgaccttggc gatcgggaaa cccgtcgcct tcgatgccag
      661 cgccgacgac cgcgacacac gcggattcat ctcgatgacg accatgcggc cgtctttcgg
      721 gttgatcgcg aactgcacgt tcgagccgcc cgtatccaca ccgatctcgc gcagcaccgc
      781 gagcgatgcg ttacgcagga tctggtattc cttgtcagtg agcgtctggg ccggtgcgac
      841 cgtgatggag tcgccggtat gcacgcccat cgggtccagg ttttcgatcg agcacacgat
      901 aatgcagttg tccttggtat cgcggaccac ttccatctcg aactctttcc agcccagcag
      961 cgactcttcg atcagcaatt cgcgcgtcgg cgacaaatcc agtccgcggc ggcaaatttc
     1021 ttcgaattct tccttgttat aggcaatccc gccgcccgat ccgcccagcg tgaacgacgg
     1081 acgaatcacg gtcggataac cgccgctgcc cgtcagcgcg gcaatctccg cctgtacctg
     1141 cagcgcttct tccatggaat gcgcgatgcc tgacttggcc gaaccgaggc cgatcttcgt
     1201 catcgcttcc ttgaacttct gacggtcttc ggctttatcg atcgcttccg gcgacgcacc
     1261 aatcagctcg accttgtact tctccagcac gccgtggtgg aacaaatcca gcgcgcagtt
     1321 cagcgcagtt tgtccgccca tggtcggcag gatggcgtcg ggccgttctt tatcgatgat
     1381 gcgctcaacg acttcccacg tgatcggctc gatgtacgtg acgtcggccg tattcgggtc
     1441 ggtcatgatc gtcgcgggat tgctgttgac gagaatgacc ttgtagcctt cctcgcgcag
     1501 cgccttgcaa gcctgcgcgc ccgaataatc gaactcgcac gcctgaccga tgatgatcgg
     1561 tcccgcgccg atgatgagga tgctcttgat gtctgtccgc ttcggcataa ctgctctcaa
     1621 tgattgtgtt gcgtgttctg tctttgcgtg tctggcgtgt ctattcaggc cgcgactttt
     1681 tgcgcttcca tcaggccgac aaagcgatcg aacaagtacg caatatcgtt cggtcccggc
     1741 gacgcttcag ggtggccctg gaagcagaac gcgggtttgt cggtgagcgc gaagccttgc
     1801 agcgtgccgt cgaacagcga cgtatgcgtg acctttgcgt tggcgggcag cgtggcggca
     1861 tcgacagcga aaccgtgatt ctgcgacgtg atcaccacgc ggccgttctc aaggtccttc
     1921 accggatgat tcgcgccgtg atggcccgtt ttcatcttca tggtcttagc tcctacggcc
     1981 agacccatga tctggtgacc gaggcaaatc ccgaacgtag gaatgccgcg ttcgatgaac
     2041 tcgcgcgtgg cgcgaattgc gtagtcgcac ggttccggat cgccggggcc attcgagagg
     2101 aagatgccgt cggggttcag cgcgagggcg tcggcggcgg tggcctcagc cggcagcacg
     2161 gtgacgtggc aaccgcgctc ggccagcatg cgcaagatgt tgtacttcac gccgtagtcg
     2221 aatgcgacca cgcgatactg cggcgctttc tgctcgccgt agccgctttc cagacgccat
     2281 tcagattgcg tccattcgta cttttctttc gtcgatacga ccttggcgag atccatcccc
     2341 gacaaacccg ggaacgagcg cgcgagttcc aaagccttgg cctcgtcgtc cccggcaaga
     2401 atgcagccgt tttgcgcacc cttgtcgcgc aggattcgcg tgagcttgcg tgtatcgatg
     2461 ttcgaaatag cgacgacgtt ttccgctttc aaatagtcgg cgagggattg ttcggagcgg
     2521 aaattcgagg cgagcaccgg cagatctcga atgatcagcc cggcggcatg gactttggtg
     2581 gattcgacgt cttcagcgtt cacaccgaca ttgccgatgt gcggatacgt cagggtgacg
     2641 atttgctggg cgtagctcgg gtccgtcagg atttcctgat aaccggtgat agcggtgttg
     2701 aacaccactt cgccgatcgt gtgaccggac gcgccgatcg agtgaccacg aaagaccgtg
     2761 ccgtcggcga gtgcgaggat tgcgggagag aatgacggca acacgggagg ctcctttgga
     2821 acaccctgtt tgccgacctg tcatccgacc gtggagtcgc gcgcggcctt gaagtggcgc
     2881 gcgcagaccc gcatcgcgtt cgattgcgtc gggcgcaaga ctcgccggca tcctcaataa
     2941 ggctccaatg actggacgcg cgaatcaggc gtttggcggt atgcgcgcgt gttgcaaggc
     3001 gcggcggatg aacggtgagt gggaggtagg cgctagggtg taggttgatt tgctcaaacc
     3061 ttcgaattat agccggaaaa cgcccttctc tccaaatttg agacgcgcca cacgcaagac
     3121 gcattccagg ttatacgctg cgggccttat ccagcgggca tgcggcgatc atgacaccac
     3181 gccgccacgc ttttcgagaa cactgctcgg caggacatac cagatggcgc tggctgtctg
     3241 cagtgcgatt agcacgcccc acacgcttaa gtgcgccgcc actggatagt ggccgcttcg
     3301 agccggccag cgcgacagca ttgcgcctat gcccacttgc aagccgaaga tcaggatgaa
     3361 caggacaagc gtgagcgtgc tgtgcgcgcg gccgatcatg tgggtcggaa aatactcggc
     3421 catcaccgca tagctcagga tgccggttcc gccaaacacg ccataacacg caatcagcaa
     3481 cgccggcgca atgggcgcac gcacaagcat cagcacctgc acaagcacga acagccccat
     3541 gccaaagccg cagaacgcat acacggtgac gccgcgtttt tgcaggccgc gcgccgccac
     3601 gccgaaaccc acgcagccga tcatcatcgc aatgccgagt accgatacca gcacggcagc
     3661 gtattgaacg ctcaggccca tcacatctag aagatagggc cttatccata gcgactgcat
     3721 ggcgtagaaa acgccttgcg tgacgaccga aaacgacgcg atcttccaga acacgctgct
     3781 gccaaggatg tgccaagtac ccttgaactg agtgagcatg tcggcttttc gatgtacacc
     3841 gtcgcgatgt tccggcgcaa aaagaaaaat ggctgctgcg accgcgaggg tcatcaccac
     3901 gagaccgtag cagacgttac gccagtcggt cacgccgagc agaatagcga gtggcgagcc
     3961 gaccaccacg ccgccgaggc cacccaccgc catcacgagg ccgttgacca tcggaagttg
     4021 tgccacgggc aggatttgcg cgagcgcctt gaacgccgcg ctcatgcaga cggacacacc
     4081 cacaccgatc agcagccgcc ccagcatcat ggcgccaatg ccgtgggcct cgccgaacac
     4141 gccgatcccg agcgccgcga acaacagcat gcccgcggtg acccggcgcg ggccaaaacg
     4201 atcgagcaac atgcccacgg gaatttgtgc cgccgcgaag cccagaaagt acagcgacgt
     4261 gagcaaccca agatccgccc cagacaaacc caggtcgtgc gtgatatagg gcgcgaagcc
     4321 gagattcacc ccgcggaaca cgtacgagac gaaatacccg gcggaaaaca gaaaaaagac
     4381 gcgaagccga acggaagacg tcatgtgcgg cgcagggggt tttatatgaa gcggcagttt
     4441 aacgcgcacg cgccaatgaa aacgccgtca ccttggtgac ggcgtggatt cttgaccgcg
     4501 cagacaggtt attgcttctt ctttttatct gtcgacttgg tttttgcggt cttagatacc
     4561 gcctcaggtt tgaccgcttt ggacggcgcg ctgaattttt cagtgacgcg cgtcaccttg
     4621 gccggagcgc tggccttgcc gccacgcgcc gtgctcttcg attcgggcac gtgggtgccg
     4681 atcttagtca cgccacccct gttccggctc gacgcagcca ccgtttccac gcgcaccgga
     4741 ccgggttcgg ccgggacagc gcgtccgacc ggcacgtgca gcacgatcaa ctggccggcc
     4801 atgacggaat cgcggtgagt acggttccag cttttaacct gcgagatcga cacgttgtag
     4861 cgatctgcga aggtcgacat ggattgcgcg cggcgaacgc ggatcaacat cttgcgggta
     4921 tcggggacgt ccggttcaac ggccagcatg gcgctttcgg cgacgtcagc gctgatgtcc
     4981 tcgtcgtcgt catcgctgcg cggcaccacg atggtcgagc ccgctttcaa ccgcatgccc
     5041 gccggaatgc ggttc
//
LOCUS       DATGBK010001302         2486 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108167, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001302 DATGBK010000000
VERSION     DATGBK010001302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108167"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..773)
                     /locus_tag="VKJ77_18210"
     CDS             complement(<1..773)
                     /locus_tag="VKJ77_18210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HMC47257.1"
                     /translation="MPAFLAVGIVVILPLLFSFYTSFTAYRLTDPDTLSHWIGWRNYE
                     RAFANGDFWAAFGRTILFLTIALNLELLLGLGVALLLNQVTKGQRALRTVMMFPMMFS
                     PVLVGFQFKFMLNDSTGIVNNLMQTLFGAKSAFPFLVNANSALASLIAAEVWNSTPIF
                     AVILMAGLMALPKDPIEASKVDGCTSWQTFRYVTLPYLMPFIYISMTIRSLDVGRAYD
                     IVRIMTNGGPGGRTELLWTMVGRIAYDDSRMGYANAIAYV"
     gene            complement(873..2207)
                     /locus_tag="VKJ77_18215"
     CDS             complement(873..2207)
                     /locus_tag="VKJ77_18215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004555384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HMC47258.1"
                     /translation="MVRDSMKTGLKIAVSVLALAGLVATTAARADNEYKGYTLRVKLI
                     GGVQYEALYTRIPLWEKETGAKVEIVSRKSHFELDRELKQDIASQHIDYCVSSNHTNF
                     SAQYPIFRDLKGLFPASYLAAFAPALLKQSEVKGTLVQIPRSTDIEALYYNKTAYADP
                     ANRDAYKKKFGTDLTPPKTFAEFTQQATFFTKAPNFYGTQFPGKDEALTGTFYSLLVA
                     NGGQLLDAKMQPTFNSPVGVKTLDWFVNLYKAGVVPKGVPSYVWDDLGNNFASGKVAL
                     DLDWPGFASFYNDPKTSKLAGNVGVVRAPLGAANKRPGWSGSHSFSITKVCARPEVAA
                     SFIQFLTSKDSQMVEARLGSIPSRIDAQQAIVQEFKAKDDHFMADAVATFSQAAKEDS
                     FTPPRIAQWNEISNALWPELQKAIIGDETSQQALDNAAKKVADIMQDSADNQ"
     gene            complement(2276..>2486)
                     /locus_tag="VKJ77_18220"
     CDS             complement(2276..>2486)
                     /locus_tag="VKJ77_18220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004523848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HMC47259.1"
                     /translation="VAETGGIPFNVDVVEPTGASTELFGTVAGQRCCVIVNGRLLVRP
                     EQGIRLDAELENTLVFDTSTSRRLR"
BASE COUNT          520 a          750 c          708 g          508 t
ORIGIN      
        1 acataggcaa ttgcgttggc gtaacccatg cgcgagtcgt cgtacgcaat gcgtccgacc
       61 atcgtccaga gcaattccgt tcggccgcct ggaccgccgt tcgtcatgat ccgcacgatg
      121 tcgtaagcgc ggcccacatc gagcgaacgg atcgtcatgg agatatagat aaacggcatc
      181 aggtacggca acgtgacata acggaacgtc tgccatgagg tacagccatc caccttcgat
      241 gcttctatcg gatccttcgg caacgccatc aaacccgcca tcaggatcac cgcgaagatg
      301 ggcgtcgagt tccagacctc ggccgcgatc agcgacgcca gcgcggagtt ggcattgacg
      361 agaaacggga acgccgactt cgcgccgaat agcgtctgca tcaggttgtt cacaatgccc
      421 gtgctgtcgt tgagcatgaa cttgaactgg aagccgacga gcacgggcga gaacatcatg
      481 gggaacatca tcaccgtgcg taacgcgcgc tggcctttcg tcacctgatt gagcagcagc
      541 gccacgccaa gacccagcaa cagttcaaga ttcagcgcga tggttagaaa caggatcgtg
      601 cggccaaacg cggcccagaa atcgccattc gcaaacgcgc gttcgtagtt gcgccagccg
      661 atccagtgcg aaagggtgtc ggggtcggtc aagcggtacg ccgtgaagct cgtataaaac
      721 gagaacaaaa gcggcaggat caccacgatc cccaccgcca ggaacgcggg catcagcagc
      781 ttgatcggca gcggtatccg tctgcgcggt gtggcgagaa caggctcgcc gccgatcgag
      841 taaggcgtgt tggattgcat gttgatcgtc ggttactggt tgtccgccga gtcctgcatg
      901 atgtccgcga ccttctttgc cgcgttatcc agggcttgtt gcgaggtttc gtcgccgatg
      961 atcgccttct gcaattccgg ccacagcgca ttggaaatct cattccactg cgcgatgcgc
     1021 ggcggggtaa acgagtcttc cttcgcggcc tgactgaagg tcgctaccgc gtccgccatg
     1081 aagtgatcgt ccttcgcctt gaactcctgc acaatcgcct gctgcgcatc aatacgcgaa
     1141 ggaatcgagc cgaggcgcgc ttcgaccatc tgcgaatcct tgctcgtcag gaactggatg
     1201 aaactagccg ccacttcggg ccgtgcgcac actttcgtga tcgagaagct atgcgaaccc
     1261 gaccagcccg gccgcttgtt ggccgcgccc agcggcgcac gaaccacacc cacgttgccg
     1321 gcaagcttcg atgttttagg gtcgttatag aacgatgcaa aacccggcca atcgagatcg
     1381 agcgcgacct tacccgacgc gaagttgttg ccaagatcat cccagacata gctcggcaca
     1441 cccttcggca ccacacccgc tttgtacagg ttcacgaacc agtcgagcgt cttcacaccc
     1501 accggcgaat tgaacgtggg ctgcatcttg gcatcgagta actggccccc gttcgccacg
     1561 agcagcgagt agaacgtgcc cgtcagggct tcgtccttgc ccgggaattg cgtgccgtag
     1621 aagttcggcg ccttggtaaa gaacgtcgcc tgctgcgtga actcggcgaa ggtcttcggg
     1681 ggcgttaggt ccgtgccgaa tttcttcttg tacgcatcgc gattcgccgg atcggcgtaa
     1741 gcggtcttgt tgtaatagag cgcttcaata tctgttgatc gcgggatctg gacaagcgtc
     1801 cccttcacct cggactgctt cagcaacgca ggcgcgaacg cggcaagata gctcgcgggg
     1861 aacaaaccct tgaggtcgcg gaagatggga tattgcgcag aaaaattcgt atgattcgac
     1921 gacacgcaat agtcgatatg ctgcgaagca atgtcctgct tcaactcgcg atccagctca
     1981 aagtggctct tgcgcgagac aatctccacc ttcgcgccgg tctccttttc ccacagcgga
     2041 atgcgcgtgt acagcgcttc atattgcacg ccgccaatca gcttgacgcg cagcgtatag
     2101 cctttgtatt cgttgtcggc gcgtgccgcg gtcgtggcga ccagacccgc tagagccagt
     2161 acggacactg cgatcttgag gccggttttc atcgaatccc taaccatgat tcatctcctt
     2221 tgttatgtgc cgtgacgtcg ggcggtacgg ctttcgtgtg gttttttcta gctttctagc
     2281 gcaaccggcg gctggtgctg gtatcgaaga caagcgtgtt ctcaagctcg gcgtcaaggc
     2341 gaatgccctg ctccgggcgc accaacaaac ggccgttcac gatgacgcag cagcgctgcc
     2401 ccgcgaccgt gccgaacaac tcggtcgagg cacccgttgg ttcgactaca tcgacgttga
     2461 atggaatgcc gcccgtctcc gccacc
//
LOCUS       DATGBK010001303         2275 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108204, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001303 DATGBK010000000
VERSION     DATGBK010001303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108204"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..998
                     /locus_tag="VKJ77_18225"
     CDS             <1..998
                     /locus_tag="VKJ77_18225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC47260.1"
                     /translation="TADIEVSGKDETSQLLAAMRHMNERLVDVVGRVRNSSDSIATGS
                     AEIAAGNTDLSQRTEEQAASLEETAASMEQLTATVKQNAENALQGNSLAANASETAVR
                     GGEVVNRVVQTMSEISSSSEQVAQIITVIEGIAFQTNILALNAAVEAARAGEQGRGFA
                     VVAGEVRTLAQRSASAAKEIKDLISASVQRVLTGSQLVDEAGRTMGEVVQSVKRVTDL
                     MGEISAASGEQHTGIEQVNQAVMQMDEVTQQNAALVEEASAAAQSMAAQSGTLRELVS
                     VFRISASDPVAQTFTPAKATPAVSRPASKIKPAKRAVAAPRIAPVVGKDPEWQTF"
     gene            complement(1105..1614)
                     /locus_tag="VKJ77_18230"
     CDS             complement(1105..1614)
                     /locus_tag="VKJ77_18230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013801420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1993 domain-containing protein"
                     /protein_id="HMC47261.1"
                     /translation="MTISMYSTSVPVFKQMLTALSDVLKKAETYATEKNIDPNALLQA
                     RLFPDMFPLVRQVQIAADFSKGVTSRLAGVDVPSWADTEVTFADLQALVAKALAYIGT
                     LDAAQFEGSENKEIVLRPGTPKEKKLAGSAYLQHYGLPQFFFHVTTAYAILRHNGVEI
                     GKRDYMGAY"
     gene            complement(2078..>2275)
                     /locus_tag="VKJ77_18235"
     CDS             complement(2078..>2275)
                     /locus_tag="VKJ77_18235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47262.1"
                     /translation="AHRLANNTELPSRYLIICTPAGFDDFVDACADAQAGPVTPVPPL
                     PEDIGRMREAAPRFGITLLPG"
BASE COUNT          451 a          635 c          755 g          434 t
ORIGIN      
        1 tgaccgcgga tatcgaggta tcgggcaagg acgaaaccag tcaattgctg gccgcgatgc
       61 gtcacatgaa cgagcgcctg gtcgatgtag tgggccgggt gcgcaacagc agcgacagca
      121 ttgccaccgg ctccgcagag attgcggcag gcaataccga tctcagccag cgcactgaag
      181 agcaggcggc ttcgctggaa gaaaccgccg cgagcatgga gcaactgacc gcgaccgtga
      241 agcagaatgc ggagaatgcg ctgcaaggca attcgctggc tgccaacgcg tcggagacgg
      301 ccgtgcgagg cggtgaggtc gtcaatcgcg tcgtccagac gatgagcgaa atttccagca
      361 gctcggaaca agtggcccag atcatcacgg taattgaagg cattgcgttc cagacgaaca
      421 ttcttgcgct gaacgcggca gttgaagcgg cgcgggcggg tgagcagggc cgcgggtttg
      481 cggtggtggc gggcgaagtg cggacgctgg ctcagcgcag cgcgtcggcg gcgaaggaaa
      541 tcaaggacct gatcagcgct tccgtgcagc gggtgcttac cggctcgcaa ctggttgacg
      601 aagccgggcg cacgatgggc gaagtggttc agtcggtcaa gcgtgtcacg gacctgatgg
      661 gtgagatcag cgcggcgtcg ggtgaacagc acaccggcat cgagcaggtc aatcaggcgg
      721 tcatgcagat ggatgaggtg acgcagcaga acgcggcgct ggttgaagaa gcgtccgccg
      781 ccgcgcagtc gatggccgct cagtcgggca ccttgcgcga gctcgtgtcg gtcttccgga
      841 tcagtgcttc cgatccggtt gcacagacct tcacgccggc gaaagcgacc cctgcggtca
      901 gtcgtccggc gagcaagatc aaaccagcga aacgggcggt ggctgcgccc cggatcgcgc
      961 cggtcgtggg caaggatcct gaatggcaga ccttctgatc gcttgaactt tgaagcggga
     1021 agtttgaaat caagctggct gcaacggact gtgtcgagtc ctttgcagcc agcttgatgc
     1081 atatgggtta gatcagcggc tagatcaata agcgcccatg tagtcgcgct tgccgatctc
     1141 gacaccgttg tgccgcagga ttgcatacgc ggtcgtcacg tggaagaaga actggggcag
     1201 gccgtagtgt tgcaggtagg cgctgccggc cagcttcttc tctttcggcg tacccggacg
     1261 cagcacgatt tccttgtttt cgctgccttc gaattgcgcg gcatcgagcg tgccgatgta
     1321 agccagtgcc ttcgccacca gtgcttgcag atcggcgaac gtgacttcgg tatcggccca
     1381 cgacggcacg tccacgccgg ccaggcgcga ggtcacgcct ttgctgaagt cagcggcgat
     1441 ctgtacctgg cgaaccagcg gaaacatgtc cggaaacaag cgtgcctgca gcagcgcgtt
     1501 cgggtcgatg ttcttttcag tggcgtatgt ttccgctttc ttgagcacgt cggacagggc
     1561 agtcagcatc tgcttgaaaa ccgggacgga cgtgctgtac atggagatgg tcatggtcac
     1621 tctttcagtc gatgtggggt gccggcgcga gcaacgccgc gccggtttgt ctatcttgtt
     1681 taatctcgga acagttctgg acaggtgatt gaaccggcta gccgcgtgcc ggccaatgcg
     1741 gccagcccca ggcggcttgg atttgcgtca gggcaaaccc tgcagcggcc ggccgggtcc
     1801 tttcctttga tctggcatgc ctagtaccgc gcaagattat aagcgcgctg cggcatatgc
     1861 ctcgtgcgcg gggctttatc ctgtgtgggt aaggatttag gccccgaatc gtggtgcctg
     1921 tcgacaagcc atacgcgtct tgtcagtgtc tgcgcttctc agcgagcaat tgcactgcga
     1981 agaaagggac ttgtcatgca ggggacttgt catgcggcgg ccaatagtcc caatagccta
     2041 tagcgcaacg acgaaaaggg cagcgtttcg cgacgctcta gcccggcagc aacgtaatcc
     2101 caaagcgcgg cgcggcttcc cgcatgcgtc cgatatcttc cggcaacggc ggaacaggcg
     2161 tgaccgggcc cgcttgggcg tcggcgcaag cgtcgacgaa gtcatcaaat ccggcgggcg
     2221 tgcagatgat caaatacctt gagggcagct cggtgttatt agccagccga tgcgc
//
LOCUS       DATGBK010001304         2644 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_224232, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001304 DATGBK010000000
VERSION     DATGBK010001304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224232"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1230
                     /locus_tag="VKJ77_18240"
     CDS             <1..1230
                     /locus_tag="VKJ77_18240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014725022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC47263.1"
                     /translation="QWRTFFRDPRLQRLIEVALDNNRDLRVAALNVAEYEAQYRITRA
                     ALGPSISASGGVTRERTLGVTSVSNDLNIGTTSWEIDFFGRLRSLKQQALENYLSTEA
                     SRQSTRISLIATVATDYLTWLSDERLLGITHDTVAADQATYDVTKRIQELGNSSLLDV
                     RQAQNTLASAQASLASYRRAVAQDRNNLVAVLGAPIPDDLPSAPAFDQATDTSMFAEI
                     DAGLPSTLLTRRPDIEEAEHALKAANANVGAARAAFFPKIELTATAGSSSSTLSGLFK
                     AGTGAWAFAPTVSLPIFDYGSNKASLDVAKIEKNIEIADYESAIQTAFKEVSNALTAR
                     ATYIDQVNADHDYVSSAQSYYAIAQARYKAGTDSFLTFLDAQRTLYTAQQQLASDTLS
                     QQSNLVTLYKVLGGGVE"
     gene            complement(1284..1988)
                     /locus_tag="VKJ77_18245"
     CDS             complement(1284..1988)
                     /locus_tag="VKJ77_18245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004528683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceH family protein"
                     /protein_id="HMC47264.1"
                     /translation="MNSTPDAPSRPPIRTLTPLEARVLAVLVEKQHTVPDAYPLSVNA
                     LTSGCNQKTARSPVMNVTDADVLTTVDDLKRLSLVFEGSSSRVPRFEHNMNRVLGIPS
                     QAAALLTTLMLRGPQTGAELRLNAARLHGFADISSVEAFLDELAANEPPRVVKLPRTP
                     GERESRWAHLLCGEVSVSVSEASAGGAVDDSVSYTEFEILKADHKRLGEELVRLRTMV
                     EHMAVELGITIDKTGE"
     gene            complement(2145..2558)
                     /locus_tag="VKJ77_18250"
     CDS             complement(2145..2558)
                     /locus_tag="VKJ77_18250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HMC47265.1"
                     /translation="MRYTLFEQRKDELILVARVLLMILFVIFGWSKLTGFSGTVGYMA
                     TEGAPFPTLSAIIAVVMEFFVGIAILIGFYVRPLALLFALYTLGTALIGHHFWTMTGD
                     AHMANMINFYKNISIMGGLLLLCVTGAGKYSIDRR"
BASE COUNT          547 a          778 c          823 g          496 t
ORIGIN      
        1 caatggcgca cgttctttcg cgatcctcgt ctgcaaaggc tgatcgaggt tgctctcgac
       61 aacaaccgcg atctgcgcgt cgcggcgctg aacgtggcgg aatacgaggc gcaatatcgc
      121 atcacgcgtg cggcgcttgg cccgtcgata tccgcgagcg gcggtgtgac acgcgaacgc
      181 acgttaggcg taaccagcgt atcgaacgat ctcaacattg gcacgacttc ttgggagatc
      241 gacttcttcg ggcgtctgcg cagtctcaag cagcaagcgc tggaaaacta tctctcgacc
      301 gaggcgtcgc gtcagagcac gcgcatcagc ctgatcgcga cggtggcgac cgactacctg
      361 acgtggctct cagacgagcg gttgctcggg atcacgcatg acacggtggc cgccgaccag
      421 gcgacctacg acgtcacgaa gcgcatacag gaactgggca actcctcgct gctcgatgtt
      481 cggcaggcgc agaatacgct tgcgagcgcg caggcaagtc tggcgtcgta caggcgagcc
      541 gtggctcaag accgcaacaa cctggtcgcg gtgctcggcg cgccgatccc ggacgacctg
      601 ccgtccgcgc ccgccttcga ccaagccacc gacacgtcga tgttcgccga gatcgatgcg
      661 ggtttgcctt cgaccctgct cacgcgccgg ccggatattg aagaggcgga gcatgcgttg
      721 aaagccgcga acgcgaacgt tggcgcggcg cgtgcggcgt tcttcccgaa gatagaacta
      781 acggcgaccg cggggtcgtc gagttcgacg ttatccggtt tgttcaaggc tggaacgggc
      841 gcgtgggcat tcgcaccgac cgtgtccctg ccgatcttcg actacggcag caacaaggcg
      901 tctctggacg ttgcgaagat cgaaaagaac atcgagattg ccgactacga aagcgcgatc
      961 cagacggcct tcaaggaggt atcgaatgcg ctgacggcgc gcgcaacgta catcgatcag
     1021 gtgaacgcgg atcacgatta tgtgagctcc gcgcagagtt attacgcgat tgcgcaggct
     1081 cggtacaagg caggcacgga cagcttcctg acgttcctcg atgcacagcg cacgctctac
     1141 accgcgcagc aacagttggc gtccgacacg ctgtcgcagc agtccaatct cgtgaccttg
     1201 tataaggtgc tgggcggcgg ggtggagtga caacgggcag gtacccgatg ccgctatgca
     1261 cacgcatcgc gtaatactta cgactactcg cccgttttat cgatggtgat ccccagttcg
     1321 accgccatat gttcgaccat cgtccgcagg cggaccaact cctcgccgag ccgcttgtgg
     1381 tcagctttga gaatctcgaa ctcggtgtat gaaacggagt cgtcgacagc cccgcccgcc
     1441 gacgcttcac tcacacttac gctcacttcg ccgcataaca aatgcgccca gcggctttcg
     1501 cgctcgcccg gcgtgcgcgg cagcttcacg acgcgcggcg gctcgttggc agcgagctca
     1561 tcgaggaacg cctcgaccga cgagatatcg gcgaagccat gcaggcgcgc ggcattcagg
     1621 cgtagttcgg ctcctgtctg aggtccgcgc agcatgagcg tggtgagcaa cgcggcggcc
     1681 tggctgggga tgcccagcac gcggttcatg ttgtgctcga agcgcggtac gcggctgctg
     1741 ctgccctcaa aaaccaggct caggcgtttc aggtcgtcga cggtcgtgag gacatcggcg
     1801 tcagtgacgt tcatcaccgg ggagcgggcg gtcttctggt tgcaaccgga tgtcagtgca
     1861 ttgaccgaca gcggataagc atcaggaacc gtgtgctgtt tttcgacgag aacggccaat
     1921 acccgcgcct cgagtggcgt cagcgtgcgg atgggtgggc gtgagggagc atcgggagtg
     1981 gagttcatgc ttgacgtcgc tgaaggcaga tactggtatt cggaccaggc gttaagccgg
     2041 gcgggggatg tttataggcg tttaaccagc ccgttgaaga gcactatgat atccgccctg
     2101 ccctgtcccg agaatacgcg gtgattgatg cactcgggat gcgcttacct tcgatcgatc
     2161 gaatacttcc ctgccccggt cacgcacaac agcagcagac cgcccatgat gctgatgttc
     2221 ttgtagaagt tgatcatgtt ggccatatgc gcgtcgccgg tcatggtcca gaagtggtgt
     2281 cctatgagcg ccgtgccaag cgtgtacaac gcgaagagaa gcgccagagg ccggacgtag
     2341 aagccgatca gaattgcaat gccaacaaaa aactccatga caaccgcaat gatggcggag
     2401 agcgtgggga acggtgcgcc ttcggtggcc atgtaaccga ccgtgcccga gaaccccgtc
     2461 aacttgctcc agccgaagat cacgaagagg atcatgagca gtacgcgcgc aaccagaatc
     2521 aattcgtctt tacgttgctc gaacagggtg tatcgcatga tggcgttcct ttggaaagag
     2581 cacgaccgta cacgggatgg atgcgctcaa atggcgccag tcgaacagta gcatcgctat
     2641 gttg
//
LOCUS       DATGBK010001305         2579 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_15403, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001305 DATGBK010000000
VERSION     DATGBK010001305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15403"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..217)
                     /locus_tag="VKJ77_18255"
     CDS             complement(<1..217)
                     /locus_tag="VKJ77_18255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC47266.1"
                     /translation="MKKSTQRRPTMTDIAKLTGVSQSTVSLVLNNATSAKFSDATRNK
                     VLKAAQDLGYRMTAREPLDTAIAATEKN"
     gene            500..1300
                     /locus_tag="VKJ77_18260"
     CDS             500..1300
                     /locus_tag="VKJ77_18260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HMC47267.1"
                     /translation="MACYDERARDALAENFDRDGFVLLPSHFSRATLEAWRAAFAPLF
                     APHEAAAREQGGSGNRGPGRYYVTLPFEGEFADPAIFCDDDVLGIVERIAGPDPVMCQ
                     LATDTPVRGSDFQDWHRDTPPLFDGVPETPSFQLAVNFPLIDVNDENGSLETTRGTHR
                     ISREEALAGLESGRFSVERVPMQLGDVMIRDVRALHRGTPNLTDTPRPMVVIGYSRSW
                     YFRPEVQVQVPRDVFAALPARAKRLLRYSPQVDKTPRTFDESYQRFAY"
     gene            1399..2403
                     /locus_tag="VKJ77_18265"
     CDS             1399..2403
                     /locus_tag="VKJ77_18265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HMC47268.1"
                     /translation="MDDAALIELRFKDRRVLLAPHVGGAIAAFYDLPDVGNGGNGGGS
                     GRGALHWLRPASADALAACNPLGMASFPLLPYCNRLRDAHFAFDGREVDLSADGNAFD
                     HALHGHAWRRPWRVGLVSSNVVELHLNHEPSSEPAHHWPYRYEATQRFELDDSGLFVT
                     MSIRNLADQPMPFGMGHHPYYPRTPATRIHTNVRAMWHATPDLLPTSLAAHPCVDALA
                     SPEGLSADAYDLDNNFAGWSRSATIDWPDEHRSVTLCADAPFDHMVLFAPSAHPDQLC
                     VEPVTNTVDFLNLDAPREDIGGGVLMPGETMQARFGWMPRESAQSDAERNESTFPVSS
                     "
BASE COUNT          455 a          761 c          804 g          559 t
ORIGIN      
        1 ggttcttttc ggtcgccgcg atcgccgtgt ccagcggctc gcgagccgtc atccggtagc
       61 cgagatcctg tgcggccttc aataccttgt tgcgcgtagc gtcggagaat ttcgcgctgg
      121 tcgcgttgtt cagtacgagc gacacggtcg attgcgagac gccggtcagc ttcgcgatgt
      181 cggtcatcgt cggacggcgt tgcgtggatt ttttcattgt ctgaggccgc gaaaaggcgg
      241 cggcgttgtc gttgcgttgc gctgaaacgt tctgcggatg ccgaggacgg taccactaat
      301 attttctacc gacaacgctc gaaaaccatc gccaggattg gcttttcccg tccttgggct
      361 tgcctaagtg ttattactaa taatattgac tacttcgtgg cgatcgtgcg attctcgggg
      421 cgcacgcgga ctgtcggatc aatgaaagcc atgcgtgtcg gccgcgctcg actcgcgtgg
      481 cgcaaccaag gagatgacga tggcctgcta cgacgagcgc gctcgcgatg cgcttgcgga
      541 gaatttcgac cgtgacggtt ttgtgctgtt gcccagccat ttctcgcgtg cgacgcttga
      601 agcgtggcgc gcggctttcg caccgctttt cgcgccgcac gaagctgcgg cacgcgagca
      661 gggcggcagc ggcaatcgcg gaccgggacg ctattacgtc acgttgccgt ttgaaggcga
      721 gttcgccgat cccgccattt tttgcgatga cgacgtactg gggatcgtcg agcgaattgc
      781 cggaccggac cccgtgatgt gccaactcgc caccgatacc cccgtgcgcg gttccgactt
      841 tcaggactgg catcgcgaca cgccgccttt gttcgacggc gtgccggaaa cgccgtcatt
      901 ccagttggcg gtgaattttc cgcttatcga tgtgaatgac gaaaacgggt cgctggagac
      961 cacgcgtggg acgcatcgga tatcgcgtga ggaagcgctt gctggcttgg agagtggccg
     1021 attctcggtg gaacgcgtcc cgatgcaact cggcgacgtg atgatccgtg acgtgcgcgc
     1081 tttgcatcgc ggcacaccga atctcaccga taccccgcgt ccgatggtcg tgatcggtta
     1141 tagccgttcg tggtatttca ggccggaagt gcaggtgcaa gtgccgcgcg atgtgtttgc
     1201 cgcgttgcct gcccgcgcga aacggttgct gcgttatagc ccgcaagtcg acaagacgcc
     1261 gcggaccttc gatgaaagtt atcagcggtt tgcatattga acaccaatca acggacaagc
     1321 gcgggtgaaa gcgccgctgc tcaatccact caatccactc agcttacgcc ggccgctgac
     1381 gatgcgtttc gcatcgcgtt ggatgatgct gcgctgatcg aactgcgttt taaggatcgg
     1441 cgagtgttgc tggcgccgca cgtcggcggc gcgatcgcgg cgttctacga tctgccggat
     1501 gttggcaatg gcggcaatgg cggcggcagt ggtcgtggcg cattgcattg gctgcgccct
     1561 gcatcggccg acgcgctcgc tgcttgcaac cccctcggca tggcgagctt tcctctgctg
     1621 ccgtactgca accggctgcg cgacgcgcat tttgcattcg atggccgcga ggtcgaccta
     1681 tccgccgatg gcaacgcgtt cgatcatgcg ctgcatgggc acgcgtggcg gcggccgtgg
     1741 cgcgtgggtt tagtgtcgtc gaacgtggtg gaattgcatc tgaaccacga acctagcagt
     1801 gaaccggcgc atcactggcc gtatcgatac gaagcgacac agcgtttcga actcgatgat
     1861 tcaggcttgt tcgtgacgat gtcgattcgc aatctcgccg atcagcctat gccgttcggc
     1921 atgggtcatc atccgtatta ccctcggacg ccggctacgc gtatccacac gaacgtccgc
     1981 gcaatgtggc acgccacgcc ggatctcctg ccgacgtcgc ttgccgcgca tccttgtgtt
     2041 gatgcgttgg cgtcgccgga aggcttgtcc gctgatgctt acgacctgga caacaacttc
     2101 gctggctggt cgaggtcggc gaccatcgac tggcctgatg aacaccgcag cgtgacgctt
     2161 tgcgccgatg cgccgttcga tcacatggtc ctgttcgcgc cctcggcgca tccggaccag
     2221 ctgtgcgtgg aacctgtaac aaacacggtg gatttcttga atctcgacgc gccgcgagag
     2281 gacatcggcg gcggggtgtt gatgcccgga gaaacgatgc aagcgcgctt cggctggatg
     2341 ccgcgcgagt cggctcagtc tgacgccgaa cggaacgaat ccactttccc ggtatcatcc
     2401 tgaaattatt cgcgcgcctg attcactgag tgcgcgagca ccttcagaat tctcaaaatc
     2461 caggaaagca catgacgacg atcgatggcg cgccaggcga atcgacccaa ccgcgccggg
     2521 tcttgctcgt cgatgacagc gtcgatgcag ccgaagccat gtcgatgctg ctcgaaacg
//
LOCUS       DATGBK010001306         1549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_154259, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001306 DATGBK010000000
VERSION     DATGBK010001306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154259"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VKJ77_18270"
     CDS             complement(<1..251)
                     /locus_tag="VKJ77_18270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012338746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47269.1"
                     /translation="MKHSVLDADEALRPASVDISTGVDAQVSHLVEVWGDTVDIRHLA
                     WSVALGIGISLGAFSAANYFLALYVHEVAMTRAYAMLVGL"
     gene            complement(324..1547)
                     /locus_tag="VKJ77_18275"
     CDS             complement(324..1547)
                     /locus_tag="VKJ77_18275"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019936817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004420 - hydroxymethylglutaryl-CoA
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0016054 - organic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HMC47270.1"
                     /translation="MAQAANLSDAEHALLGNPGALALETANGMIENVIGTFQLPMAVA
                     GYFQINGRDVLVPMAVEEPSIVAAASFMAKMAREAGGFITSSTGPLMRAQVQIISVSD
                     PYGARLSILKHKEELIQLANSRDKVLIGLGGGCKDIEVHVFPETPRGAMVVAHLIVDV
                     RDAMGANTVNTMAESVAGRIEEITGGKVRLRILSNLADLRLARAQVRYSAETLTTKEY
                     SGEQVIEGVIDAYLFAAIDPYRAATHNKGIMNGIDPVIVATGNDWRAVEAGAHAYACR
                     NGRYTSLTTWEKAGNGDLVGTIEMPMPVGLVGGATKTHPLARLALKIMDVHSAQDLGE
                     IAVAVGLAQNMGALRALSTEGIQRGHMALHARNIAMSAGATGVDIDWVVGKMVAANDV
                     RTDYAMTLLAGPRDA"
BASE COUNT          291 a          513 c          439 g          306 t
ORIGIN      
        1 agtcccacca gcatggcgta ggcgcgggtc atcgcgactt cgtgtacgta cagcgcgagg
       61 aaataattgg ccgcggaaaa agcgcccagg ctgatgccta tgcccagagc aacagaccac
      121 gcgagatggc gaatgtcgac ggtgtctccc cacacttcga ccaggtggga aacctgcgcg
      181 tcgacgcccg tgcttatgtc cacggacgcg ggtctcaacg cctcgtcggc gtccaatact
      241 gaatgcttca ttgtctcctc cgtttgcgga agtttttgtt tcgttgccgc cgtcgtgcgt
      301 ctggaccaaa atcaggccgc caatcaggcg tcacgaggcc ctgcaagcag cgtcattgcg
      361 tagtcggtac gcacatcgtt tgctgcgacc atctttccaa ctacccaatc gatgtccacg
      421 ccggtcgcgc ccgcggacat cgcgatattg cgcgcgtgaa gcgccatatg cccccgctgg
      481 ataccttcgg tggagagcgc acgcaacgcg cccatgtttt gcgcaaggcc gacggcaacc
      541 gctatttcgc cgagatcctg agccgaatgc acgtccatga tcttgagggc gagccgggcg
      601 agcggatgcg tcttggtggc tccgccgaca agacccacag gcatcggcat ttcgatggtg
      661 cccaccagat caccattacc tgctttctcc cacgtggtca acgacgtata tcgaccgttc
      721 cggcacgcat acgcatgcgc gcccgcttcg accgcgcgcc agtcgttacc cgtcgcgacg
      781 atcaccgggt caatgccgtt catgatccct ttgttatgcg tcgcggcgcg gtacggatcg
      841 atggccgcga acagatacgc atcgatcacg ccttcgataa cttgctcacc cgaatactcc
      901 ttcgtcgtca gcgtctcggc ggagtaacga acttgcgcgc gggcgaggcg caaatccgcg
      961 agattcgaca agatgcgcag gcgaacttta ccgcccgtga tctcctcgat acgacccgcc
     1021 accgactccg ccatcgtatt gacggtgttc gcgcccatcg cgtcccgtac atcgacgatc
     1081 aagtgcgcga ccaccatcgc cccgcgcggc gtttcaggaa acacatgaac ctcgatatcc
     1141 ttgcagccgc cgccgagacc gatcagcacc ttgtcgcggc tattcgcgag ctggatcagt
     1201 tcctccttgt gcttgaggat cgacaaacgc gcgccgtagg gatcgctcac gctaatgatc
     1261 tgcacttgcg cgcgcatcag cggcccggtg ctcgacgtga tgaagccgcc ggcctcgcgc
     1321 gccatcttcg ccatgaacga ggccgcggcg acgatcgatg gttcctctac cgccatgggc
     1381 acgagcacat cgcgtccgtt gatctggaaa tagccggcca cggccatcgg caactggaac
     1441 gtcccgatta cgttctcgat catgccgttg gccgtttcca gcgcgagagc gccgggattg
     1501 ccgagtaacg cgtgctcggc gtcgcttaga ttcgctgcct gcgcgatgt
//
LOCUS       DATGBK010001307         1553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108231, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001307 DATGBK010000000
VERSION     DATGBK010001307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108231"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            237..>1553
                     /locus_tag="VKJ77_18280"
     CDS             237..>1553
                     /locus_tag="VKJ77_18280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47271.1"
                     /translation="MPDSAVNPARQVADAFDTAGSRRADGASASASKSASAGRPAESD
                     ADAKLARAARSAQRLALLSRAPYGAPTLDLFAEDAERATLQALNTDIRQSSLPGFELP
                     EVFMAAVPGEDGSFGAVRVLRSGALSVDGLVVSSVAGSRDDAATTQADSQTADAATLE
                     LMFDDVLAPHEVVAGPVEPEPLEERVQGVPVVAALGEGNAQGSNKRASAARARGAARN
                     VSTTGPSPAAAMSEVETMERKSGPSDAVTQVVNRSPDVPSMPNSSSTANASNAPNASN
                     APNVASAPSASNAATKPATSPSLRDAARAAATPHRGQPQSLAAALIDDDRRTRTSTSS
                     ASQAPSREASELDTARATAYADTIDALYAVIADQRGAAAALSRRVNTVLMIVICVLLV
                     TVAAGVAQSIALARLTRENMAQQQRIEQLLLDQQATLASFFDTDSAT"
BASE COUNT          272 a          492 c          511 g          278 t
ORIGIN      
        1 gcgcgcgctg gaaaccgtgc gggaattcaa ggaagagggc tcggcttgag actcggctcg
       61 agactcggct tgagaccgcg cgcgtccgtt gcgagggcgc gcaagcgtgc gacaatgcgg
      121 cctcgaaaac ccatgcagcc gttttttctg ttgcgaggcg ccaagccggg ccgcttcatc
      181 ggacgtgttt tttcccgcct gcggtcgcgt caggccgcgc tgtcaatcat cgacttatgc
      241 cagattccgc cgtcaatccc gctcgacaag ttgctgatgc ctttgatacc gctggttcgc
      301 gtcgtgccga tggtgcgtct gcgtccgctt ccaaatctgc gtctgctggc cgtccggctg
      361 aatcggatgc cgatgccaag ctcgcccgcg ccgcacgctc ggcacagcgt ctcgcgttgt
      421 tgagccgggc gccctacggc gcgcccacgc tcgatctgtt cgccgaagac gctgagcgcg
      481 ccacgctcca ggcgttgaat accgatatcc gacagtcatc gttgcccggc ttcgagttgc
      541 ccgaggtttt catggcggcc gtgccgggcg aggacggatc gttcggggcg gtgcgggtgt
      601 tgcgcagcgg ggcgttatcg gtggatgggt tggttgtgtc gagcgtcgct gggtcgcgtg
      661 atgatgcggc gacgacgcaa gcggacagcc agacggccga tgccgcgacg ctggaactca
      721 tgttcgacga tgttctcgcg ccccatgagg tggttgctgg gccggtagag cctgaaccgc
      781 tggaagagcg cgtgcaggga gttccggtcg tggcggcgtt gggtgaaggg aacgcgcagg
      841 gttcgaacaa gcgtgcatcc gcggcgcgag ctagaggcgc tgcccggaat gtatcgacga
      901 ccggaccgtc gccagccgct gcgatgtcag aagtcgagac gatggaacgt aaaagcgggc
      961 cgagcgatgc cgtcacgcaa gttgtgaacc gttcgccgga cgtaccgagt atgccgaact
     1021 catcaagcac cgcgaacgca tcgaacgcac cgaacgcatc gaacgcaccg aacgtagcaa
     1081 gcgcaccgag cgcatcgaac gccgccacaa agccggccac atctccgtcc cttcgcgacg
     1141 ctgcacgagc cgcagcaact ccccatcgcg ggcagccgca atccctggcg gccgcattaa
     1201 tcgacgatga ccgccggacg cgcacgagta cctcaagcgc ctctcaagcg ccttcccgcg
     1261 aagcgtcaga actcgatacc gcccgcgcga ccgcgtacgc tgacacgatc gacgcgttgt
     1321 atgccgttat cgccgaccag cgcggtgcag cggccgcctt gtcgcggcga gtaaatactg
     1381 tcctgatgat cgtgatctgc gtgttgctcg tgacggtcgc ggcgggtgtg gcgcagagca
     1441 tcgcgctggc tcggctgacg cgtgaaaaca tggcgcaaca gcagcgcatc gagcaattgt
     1501 tgctggatca gcaggccacg ctggcgtctt tcttcgatac cgattccgcc acc
//
LOCUS       DATGBK010001308         2381 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_62298, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001308 DATGBK010000000
VERSION     DATGBK010001308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62298"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1680)
                     /gene="aceK"
                     /locus_tag="VKJ77_18285"
     CDS             complement(<1..1680)
                     /gene="aceK"
                     /locus_tag="VKJ77_18285"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013586941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008772 - [isocitrate dehydrogenase
                     (NADP+)] kinase activity [Evidence IEA];
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HMC47272.1"
                     /translation="MNHFPKLLSSQIGFDVAETLLEGFDRHYRVFRDAAIGAKGLFEA
                     GDWHALQRLARERITSYDDRVEECVMRLEDEYDAENIDDEIWQQIKLHYIGLLTSHRQ
                     PECAETFFNSVCCKILHRSYFNNDFIFVRPAISTEYIENDEPAAKPTYRAYYPSKDGL
                     AATFERIVTNFQLEPPFEDLPRDVQCLMRAITEAFGEFKAAPNFQIHVLSSLFFRNKA
                     AYIVGRIINGDLVIPFVVPVRHASPGLLALDTVLLQREQVLIIFSFSHSYFLVDMEVP
                     SAYIQFLRSIMPGKPKAEIYTSVGLQKQGKNLFYRDLLHHLSHSSDKFVIAPGIKGLV
                     MLVFTLPSFPYVFKLIKDNFPPPKETTRKKIQDKYQLVKRHDRLGRMADTLEYSSVAL
                     PLSRLDDALLKELTKEVPSMIEYEGDNLVIRHLYIERRMTPLNLYLQNGTPSEIEHGI
                     KEYGDAIKELIQANIFPGDMLYKNFGVTRHGRVVFYDYDEIEYLTDCNVRRVPQARNE
                     EDEMSGEPWYTVGPHDIFPETYDTFLLGDPRVRNVFMKHHPDFFDPALWQKH"
     gene            complement(1846..2298)
                     /locus_tag="VKJ77_18290"
     CDS             complement(1846..2298)
                     /locus_tag="VKJ77_18290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC47273.1"
                     /translation="MTDTRYTITELAREFEITPRAIRFYENQGLLTPAREGTNGMRRI
                     YSARDRTRLKLTLRGKRLGFTLLEVSRLLDLYDSPTGTVAQLHAFLDTIAAHRAVLER
                     QLDDLNATLAELAGYEAQGRALLSANAEKRTRKVARAPAAQEKSAKVP"
BASE COUNT          463 a          668 c          713 g          537 t
ORIGIN      
        1 gtgcttttgc cagagagcgg ggtcgaagaa atcggggtga tgtttcatga acacgttgcg
       61 cacgcgcggg tcgccgagca ggaacgtgtc gtaggtttcg gggaagatgt catgcggccc
      121 gacggtgtac cacggctcgc cggacatctc gtcttcctcg ttgcgcgctt gcggcactcg
      181 gcgcacgttg cagtcggtca ggtactcgat ctcgtcgtag tcatagaaca ccacgcggcc
      241 gtggcgcgtg acgccgaaat tcttgtagag catgtcgccg gggaagatgt tcgcctggat
      301 cagctccttg atcgcgtcgc cgtattcctt gatgccatgc tcgatttcag atggcgtgcc
      361 gttctgcaaa tacaggttca gcggcgtcat gcggcgctcg atgtacaaat gcctgatcac
      421 caggttatcg ccttcgtatt cgatcattga agggacttct ttggtgagct ctttcagcag
      481 tgcatcgtcg aggcgcgaca gcggtaacgc gacgctggaa tattcgagcg tgtcggccat
      541 gcgcccgagc cggtcgtgcc gtttgacgag ctgatacttg tcctggatct tcttgcgcgt
      601 ggtttccttc ggcggcggga agttgtcctt gatcagcttg aacacatacg ggaacgacgg
      661 cagcgtgaac accagcatca cgagtccctt tatgcccggc gcgatgacga atttatcgct
      721 ggaatgcgac aggtgatgca gcaagtcgcg atagaacagg tttttgccct gcttctgcaa
      781 gcccaccgac gtatagattt ccgccttcgg tttgcccggc atgatcgagc gcaggaactg
      841 gatatacgcc gacggcactt ccatatccac gaggaagtac gagtgcgaga agctgaagat
      901 gatcagcact tgttcgcgct gcagcaagac cgtatcgagt gcaagcaggc cgggggacgc
      961 gtgacgcacg ggcacgacaa aaggtatcac cagatcaccg ttgatgatcc ggcccacgat
     1021 gtacgccgcc ttgttgcgaa agaatagcga cgacagcacg tgaatctgga aattaggcgc
     1081 tgccttgaac tcgccgaagg cttcggtaat ggcgcgcatc aggcactgga catcgcgtgg
     1141 caaatcttcg aacggcggct cgagctggaa gttcgtcacg atccgttcga acgtagcggc
     1201 gagcccgtct ttactcgggt aatacgcgcg ataggtcggc ttggccgcgg gttcgtcgtt
     1261 ctcgatgtac tccgtcgaaa tagccggccg cacgaaaatg aagtcgttgt tgaagtacga
     1321 gcgatgcagg atcttgcagc acacggagtt gaaaaacgtc tcagcgcact cgggctgccg
     1381 gtgcgacgtc agcaagccga tgtaatgcaa cttgatctgc tgccagattt catcgtctat
     1441 gttctcggcg tcgtactcgt cttccagacg catcacgcac tcttccaccc ggtcgtcgta
     1501 cgacgtgatg cgctcgcgcg caagccgctg cagcgcgtgc cagtccccgg cctcgaatag
     1561 ccccttcgcc ccgatggccg catcgcgaaa cacgcgatag tgacggtcga agccttcgag
     1621 cagcgtttcc gcgacatcga agccgatctg cgacgacagc aacttgggaa agtgattcat
     1681 atcgagtatg cacttcgtgt ggtgtcgttc aacgcgcgct aagtgcgctt cgtgattacg
     1741 tctttacgca atttataagt gtcaaatccg gctttgaatc cggccgatat tgtatcgccg
     1801 gatgttttgg ttcctgggcg gcagccgttc ttgcctgttg tgagttcaag gcactttcgc
     1861 gcttttctcc tgggcggccg gcgcgcgagc caccttgcgc gtgcgctttt cagcgttcgc
     1921 tgaaagcaac gcacgccctt gcgcttcgta tccggcaagc tcggcgagcg ttgcgttcag
     1981 gtcgtccagt tgccgctcca gcaccgcgcg atgcgccgcg atggtgtcga gaaacgcgtg
     2041 taactgggcg accgtcccgg tcggcgaatc gtagagatcg agcagcctgc ttacttccag
     2101 caacgtgaat ccaagccgtt tgccacgcag cgtcagcttg agccgcgtgc ggtcgcgcgc
     2161 cgaatatatg cgacgcatgc cgttcgtgcc ttcgcgcgcc ggcgtgagca gaccctggtt
     2221 ctcatagaac cggatcgcgc gcggcgtgat ctcgaattcc cgtgccagtt cagtgatggt
     2281 gtagcgcgtg tctgtcattg aaattacaag gttacgagcg cttttctgta gccgacgtta
     2341 aaatgcaggt taacgttagc gtcaacttgg cggcaatgca a
//
LOCUS       DATGBK010001309         4882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_247011, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001309 DATGBK010000000
VERSION     DATGBK010001309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4882
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247011"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..375)
                     /locus_tag="VKJ77_18295"
     CDS             complement(<1..375)
                     /locus_tag="VKJ77_18295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC47274.1"
                     /translation="MPNDKPTAYPADAQDEAPPAPVKRSRGGPKGLRITDVAAVAGVS
                     PITVSRVFNNPESVAPETLERVRQVVQKLGYVPNRLAGGLSSSKSRLIAAIVPTIAHS
                     LFSETIQVFSETMSKAGYQVLLA"
     gene            complement(451..1785)
                     /locus_tag="VKJ77_18300"
     CDS             complement(451..1785)
                     /locus_tag="VKJ77_18300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47275.1"
                     /translation="MNTVPQAIDEIPLINRLAFRLMPLLGLLYLIAYIDRSNISFAKL
                     QMLGSLGLSEVAYGLGASLFFIGYLIFEVPSNVLLHKYGAPRWIARIMLTWGIVTVLL
                     AFTRNATTFYVLRFLLGASEAGLYPGVIYYLTLWFPSRHRVRMLGYFTVGSSLGNMVG
                     APICGWLLDKGGLFGLQGWQLVFIVTGIPSILLTAVVLLYLPASPLKAKFMSDAEKKW
                     LADTLDNERSLAAQTEAGKTTFLSVLTEPRVIGMALYYMMLSMSVYGVSYWLPTLVKG
                     FGVSNTVNGLINIVPWLLATIVLAWLPSKLRAADRTMTAMLCASVLGVMFFLGSVFLP
                     TNTLRFIALSLGAPCMYLLLPCFWTLPSKFLTGARAAAGIAAINSLGNVGGFIAQNLV
                     PWVRQVSGSTKAPMLIPAACLFTFGVVTLILIRRNRHDGTQEAGTRRRVEAT"
     gene            complement(1846..2577)
                     /locus_tag="VKJ77_18305"
     CDS             complement(1846..2577)
                     /locus_tag="VKJ77_18305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease activity regulator RraA"
                     /protein_id="HMC47276.1"
                     /translation="MNPSDTPVSNAALELLRHVSTATLTTQLFKRGLRNVFLQGVAPL
                     VKPAPGAPNLVGPAFTLRNIPAREDLDHVGVFQDPDHPQRKAVESAPPGSVLVQDCRG
                     DRSVASVGSILALRLAKRGVAGMVSDGAVRDSGTISDLGLPLWCAGASAPLNLAKHHA
                     VDMNVPIACGGVAVYPGDIVVADVDGVVIVPREMAEDVARDATEQEQLEIFISQRIDE
                     GRPLRGTYPPNEETLAAYAQWRAQK"
     gene            complement(2603..4384)
                     /gene="araD"
                     /locus_tag="VKJ77_18310"
     CDS             complement(2603..4384)
                     /gene="araD"
                     /locus_tag="VKJ77_18310"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinonate dehydratase"
                     /protein_id="HMC47277.1"
                     /translation="MSSNPTAPRKTPEQLRSFRWYGVNDLRSFGHRSRTAQMGYHPSD
                     YMGKPVIAVVNTWSELNSCHTHFKQRVEEVKRGVWQAGGFPVEMPVMTLAEPFQKPTT
                     MLYRNFLAMETEELLKSYQFDGCVLMGGCDKTTPGLLMGAISMNLPTIFLPAGPMLRG
                     NWNGRTLGSGSDTWKYWAELRAGKITEEEWKGIESGIARSPGHCMTMGTASTMTTATE
                     SLGLTLPGFSSIPAVDSRHAQFASLTGQRIVEMVWTDQKPSDILTAKSFDNAVTTVLS
                     MSGSTNAIVHLVAVARRAGIDLTTARFDELARITPVLANLRPAGKYLMEDFFYAGGLR
                     ALLVELGGLIDGTQMTVSGSTLGENIAGAEIFDDDVIRKRGNPLVERDGLAVLTGNLA
                     PDGAVIKPAAMEQHLLKARGPAVVFKDYADMAARIDNEELDITAESVIVLQHAGPVGA
                     PGMPEWGQLPIPQKLLKQGVRDMVRISDARMSGTSYGACVLHVAPESFVGGPLALVKD
                     GDVIELDVPGRRLHLDVSDDELAIRRQAWKAPKRPFERGFGVMHQLHVTQANKGCDFD
                     FLEEPVAVSSETLAATTGANRDEPEIH"
     gene            4689..>4882
                     /locus_tag="VKJ77_18315"
     CDS             4689..>4882
                     /locus_tag="VKJ77_18315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47278.1"
                     /translation="MLRSFDQLCHPADKGLLVAADHGHATLTGGGTYAMPWHWHDCLM
                     FILPSHGAVELRHEDQRAGT"
BASE COUNT          960 a         1547 c         1451 g          924 t
ORIGIN      
        1 cgcaagcagt acctgataac cggccttcga catggtctcg ctgaacacct gaatagtctc
       61 ggagaacaac gagtgcgcga tggtcgggac aatcgccgcg atcagccgcg acttcgacga
      121 ggacaacccg cccgccagcc ggttgggcac ataacccagc ttttgcacga cctgacgcac
      181 gcgctcgagc gtttccggcg cgaccgattc cggattgttg aagacgcgcg aaaccgtgat
      241 gggcgagacg cccgcgacgg ctgctacatc ggtgatacgc agccctttcg gaccgccgcg
      301 cgagcgcttg acgggtgcgg gcggggcttc gtcctgagca tcggcgggat aggcggtcgg
      361 cttgtcgttc ggcatggttc gcttagttgc aggaaggctt gacgccggta ttgtagtcaa
      421 caccgaccgg acctcatcgc gggaatggtc ctacgtcgct tccaccctcc ttcgagtgcc
      481 agcctcctgc gtaccatcat ggcgattgcg ccgaatcaaa atcagcgtga cgacgccgaa
      541 cgtaaaaaga cacgccgcag gaatcagcat gggcgccttc gtgctgccgc tcacctgccg
      601 gacccatggc accagattct gcgcgataaa gccgcctaca ttaccgagcg aattgatcgc
      661 cgcgattcct gcggccgcgc gcgcgccggt caggaacttc gacggcagcg tccagaaaca
      721 cggcaggagc aaatacatgc agggcgcgcc aaggctcaac gcaatgaaac gcaacgtgtt
      781 ggtcggcagg aacacgctgc cgagaaagaa catcacgcct agtaccgacg cacagagcat
      841 tgcggtcatc gtgcggtcgg ctgcgcgcaa cttcgacggc aaccacgcga gcacgatagt
      901 cgcgagcagc cacggcacga tgttgatcag gccgttgacg gtattgctga caccgaaccc
      961 cttgaccagc gtcggcagcc agtagctcac tccatacacc gacatggaca gcatcatgta
     1021 atacagcgcc atgccaatca cacgcggttc cgtcaacacg ctcaggaacg ttgtcttgcc
     1081 cgcttcggtt tgcgccgcga gggaccgttc gttatcgagc gtatcggcca gccatttctt
     1141 ttcggcatcc gacatgaatt tcgctttgag cggagacgct ggcaaataca acagcacgac
     1201 agcggtcagc agaatggacg gtatgcccgt gacgatgaac acgagctgcc agccttgcag
     1261 accaaagagt ccacccttgt ccagcagcca gccgcagata ggcgcgccca ccatgttgcc
     1321 caggctgctg cccaccgtga aatatcccag catccgcacc cgatgccgcg atggaaacca
     1381 caaggtcagg taataaatca cgccgggata aagcccggct tccgaagcac cgagcaggaa
     1441 gcgcagcacg tagaacgtcg tggcgtttct cgtgaatgcg agcagtaccg tgacaatgcc
     1501 ccacgtcagc atgatgcgtg cgatccagcg cggcgcgccg tacttgtgca gcagcacgtt
     1561 gctcggcact tcgaagatca gatagccgat gaaaaacaag gacgcgccaa gcccatacgc
     1621 cacttcgctc aaaccgagac tgcccagcat ctgcagcttg gcgaagctga tattcgatcg
     1681 gtcgatatac gcgatcaggt acagcaggcc aagcagcggc attagcctga atgccagccg
     1741 gttgatcaac ggtatttcgt ctatcgcttg cggaacagta ttcaccgtgt ctcctgcgcc
     1801 cgctgcatgc cagcggggcg ttaactttca aaggtcgata cgatgttatt tttgcgcgcg
     1861 ccattgcgcg taggccgcca gcgtttcttc attcggcgga taggtcccac gcaatggcct
     1921 gccttcatca atacgctgcg agatgaagat ttccagttgt tcctgctcgg tcgcatcgcg
     1981 cgccacgtct tccgccattt cgcgtggcac gatcacgaca ccgtccacat cggcgacaac
     2041 aatatcgccc gggtacaccg ccacgccgcc gcatgctatc ggcacgttca tatccaccgc
     2101 gtgatgtttg gcgaggttca gcggcgcgct tgcgcccgcg caccacagcg gcaggccgag
     2161 gtcggaaatc gtgccgctgt cgcgcacggc gccgtcggag accatgccgg ccacgccacg
     2221 cttcgccagc cggagcgcga gaatcgatcc caccgatgcc accgatcggt ctccgcgaca
     2281 atcctgaacc agcacgctgc ccggcggcgc gctctccacc gccttgcgct gcggatgatc
     2341 ggggtcctgg aacacgccca cgtgatcgag gtcttcacgc gccggaatat tgcgcagcgt
     2401 aaatgccggt ccaacgaggt tcggtgcacc cggtgcgggt ttgacgagcg gcgcgacgcc
     2461 ttgcaaaaac acgttgcgca aaccgcgttt gaacaactgc gtggtgagcg tcgccgtgct
     2521 gacgtgacgc aacagttcca gcgcagcgtt gctgacgggg gtatcggatg ggttcataag
     2581 gagtgctctt ctctgaataa ggttagtgga tctcgggttc gtcgcggttc gcgcccgtcg
     2641 ttgctgccaa ggtctccgac gacaccgcca ccggttcttc caggaaatcg aagtcgcagc
     2701 ccttgttcgc ctgcgtgacg tgaagctgat gcatcacgcc aaagccgcgc tcgaacgggc
     2761 gtttcggcgc cttccacgct tgcctgcgaa tggcgagttc gtcgtcactg acatcgagat
     2821 ggaggcgtcg gccgggcaca tcgagttcga tcacgtcgcc gtctttcacc agcgcgagcg
     2881 gaccgccaac gaacgattcc ggcgccacat gcagcacgca cgcgccgtag ctcgtgccac
     2941 tcatgcgggc gtccgagatc cgcaccatgt ctcttacgcc ttgcttcagc agcttctgcg
     3001 ggatcggcaa ctggccccac tccggcatgc caggcgcgcc caccggaccc gcgtgttgca
     3061 gcacgatcac agactcggcg gtaatgtcga gttcttcgtt gtcgatgcgc gccgccatat
     3121 cggcgtaatc cttgaatacg acggccggac cgcgcgcctt cagcaggtgc tgctccatgg
     3181 cggccggctt gatgacggcg ccatccggcg caagattgcc ggtcagcacc gcaaggccat
     3241 cgcgttccac cagcgggttg ccccgcttgc ggatcacgtc gtcgtcgaag atttccgcgc
     3301 ctgcgatgtt ttcgccgagt gtcgacccgc tcactgtcat ctgcgtgccg tcgatcaggc
     3361 cacccagttc cacgagcaat gcgcgcaaac cgcctgcata gaagaagtct tccatcaggt
     3421 atttgccggc cggacgcagg ttggcgagca cgggcgtgat gcgcgcgagt tcatcgaagc
     3481 gcgcggtcgt caggtcgata cccgcccggc gcgcgaccgc caccagatgc acgattgcgt
     3541 tcgtagaacc ggacatggaa agaacggtgg tgacggcgtt atcgaaggat ttcgcggtca
     3601 ggatgtccga cggtttctgg tcggtccaga ccatctccac aatccgctgt ccggtcagcg
     3661 atgcgaactg cgcgtgacgc gaatcgactg cggggatcga tgaaaagccg ggtagcgtca
     3721 ggccgagtga ttcagtggcg gtggtcatgg tcgacgccgt gcccatggtc atacagtggc
     3781 ccggcgaacg tgcgatgccg ctttcgatgc ccttccattc ttcttccgtg atcttccctg
     3841 cgcgcagttc agcccagtat ttccaggtgt ccgagccgct gccgagcgtg cgaccgttcc
     3901 aattgccgcg cagcatcggg ccggccggca gaaagattgt tggcaggttc atgctgatcg
     3961 cgcccatcag caggccgggt gtggtcttgt cgcagccacc catcagcacg cagccgtcga
     4021 actgatacga cttcagcaat tcctcggttt ccatcgcgag gaagtttcga tacagcatgg
     4081 ttgtcggctt ctggaacggc tcggcgagcg tcatcacggg catttcgacc gggaacccgc
     4141 cggcctgcca gacgccgcgc ttgacctcct ccacgcgctg cttgaagtga gtgtggcacg
     4201 agttgagttc gctccacgta ttgacgacgg caatgacagg cttacccatg taatcggacg
     4261 ggtgataacc catttgcgcc gtgcgcgaac ggtgtccgaa cgagcgcagg tcgttcacgc
     4321 cataccagcg gaagctgcgt aattgttcag gggtcttgcg gggggccgtg ggatttgaag
     4381 acaagcttat tctccttggt agcgctacca acacgctctt gaatgggcga atggtaacgc
     4441 tatcattgcg gcgcgtccgt aagggatttc acgaataagg agagggttgt gtgcaaataa
     4501 cgctgggcgt tcaaccagca ttgatgacaa acggaatatc ccgccgcatt ttgcgctgct
     4561 atcctcgccg catcccgttc atgccgggcc ggtgccaccc tgaccgcgat gcgcgatgcg
     4621 cgttgcgcat tcgtctcaag gccggcaaga gggttgagac ccatttaaac tcgcatggga
     4681 ggttcgccat gctgcgatcg ttcgatcaac tctgtcaccc agccgacaag ggcctgctgg
     4741 tcgctgccga ccacggccac gcgacgctca ccggcggcgg cacctacgcc atgccgtggc
     4801 actggcacga ttgcctgatg ttcatcctgc cgagccacgg cgccgtcgag cttcggcacg
     4861 aagaccagcg cgcgggcacc tg
//
LOCUS       DATGBK010001310         2859 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_62304, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001310 DATGBK010000000
VERSION     DATGBK010001310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2859
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62304"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2505)
                     /locus_tag="VKJ77_18320"
     CDS             complement(<1..2505)
                     /locus_tag="VKJ77_18320"
                     /inference="COORDINATES: protein motif:HMM:NF013867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HMC47279.1"
                     /translation="MTTRAIADEESTRSFTVVGIGASAGGLEAISELLAGIAPSCGMA
                     FLVVQHLAPFRPSLLPEILSKQTSMPVIEAADGMAIEVDHVYVIPPNTSMSIAQRFIR
                     LQPRGETLGPPMPIDDLFDSLASDLGVNAIGVILSGNGSDGALGLQAIQGGGGITFAQ
                     DTASARHSSMPLAAMGLGCVDSVLAPREIAREIARVGDYSSRALDELESMRPATDPGD
                     QSLRPLFRLLRNACNIDFTYYKRGTVQRRLSRRMALREMSSLSDYVALLGSDAAETLA
                     LGRDLLIRVTEFFRDPATFDELLRTVFPRLISDHDAPPSIRVWVPGCASGEEVYSIAI
                     CLVEYLGERLAGTKIQFFGSDVSVDALETARAGRYIENIARNVSPERLERFFVRDGDY
                     YCVNKSVRSLCTFARHNVATDPPFSRIDLISCRNLLIYLDPMLQRKVMPLFHYALAPD
                     GVLMLGPSESVGASSELFSAIPSVSSKLYSKNPSPGRPRMGLPASTAMPHAFASARPS
                     ASGREVPTRAELLRDEVNRMTLERYTPPSVLCDEELNILEFRGDTSAYLANPNGPPSS
                     SLKRLARPEVFLAIDEAVRRARREGTVVRRASLRMSNAGSVANVTLEVHAVQIAGVPG
                     QWYLIFFEAAANGGSTSSKPGRASLTNFVAQALRQVKERPERGAPSEKDLEIARLDAE
                     LEGGHRHLLAILEEHERAREDLRASEEELLSSNEELQSTNEELETAKEELQSVNEELT
                     TTNDELRYRNHELKTANDEVARARDFSQAIVETMSEPLLVLEADLKITLANRAFYQTF
                     QTSPDETIGTKLYDLGNEQWNIPALRELLEELVPQRT"
BASE COUNT          543 a          877 c          886 g          553 t
ORIGIN      
        1 cgtcctttgc ggcaccagtt cctcgagcag ttcacgcagc gcgggaatat tccactgttc
       61 gttgcccagg tcatacagct tcgtgccgat ggtctcatcg ggcgatgtct ggaaggtctg
      121 gtaaaacgcg cggttggcca aggtgatctt gaggtccgcc tcgagcacga gcaaaggttc
      181 agacatggtc tcgacaatcg cttgcgagaa gtcgcgcgcg cgagccacct cgtcgttcgc
      241 ggtcttgagc tcatgattgc gataccgcag ctcgtcattg gtcgtcgtca actcttcgtt
      301 gaccgactgc agctcttcct tggcggtctc gagttcttcg ttggtgctct ggagttcctc
      361 attgctcgac agcaattcct cctcgcttgc ccgcaggtcc tcccgagctc gctcgtgttc
      421 ctcgagtatc gccagtaaat gccggtggcc gccctcgagt tcggcgtcca gcctcgcgat
      481 ttcaaggtcc ttctcgctgg gggctccgcg ctcgggccgc tccttgactt gccgcaaagc
      541 ctgcgcgacg aagtttgtca gcgatgcgcg ccctggcttg gacgacgtgc taccgccgtt
      601 agcggccgct tcgaagaaga tcagatacca ctggccgggc acgccggcga tctgtaccgc
      661 atgcacctcg agcgttacgt ttgcaacgct gcccgcgttg ctcatgcgca gactggctcg
      721 gcggacaacg gtgccttcgc ggcgcgcccg tctgactgcc tcatcgattg ccaggaaaac
      781 ctccggccgt gcgagtcgct tgagactgct gctgggcggt ccgttcggat tggccagata
      841 cgctgaagta tcgccgcgga actcgagaat attcagttcc tcgtcgcaca gcacgcttgg
      901 cggtgtgtac cgttccaagg tcatgcgatt gacctcgtca cgcagcaact ctgcacgcgt
      961 cggcacctcg cgaccgctag cggagggtct ggcggaggcg aacgcgtgcg gcatcgccgt
     1021 cgaagcaggc aggcccatcc gcggacgccc ggggctgggg ttcttgctat agagcttgct
     1081 cgacacgctg ggaatcgcgc tgaatagctc ggacgacgcg cccaccgatt ccgacggtcc
     1141 cagcatcagt acaccgtcgg gcgccagcgc gtaatgaaac agcggcatga ccttccgctg
     1201 cagcatggga tccaggtaga tcagcaggtt acggcagcta atcaggtcga tcctcgaaaa
     1261 cggcggatcg gtcgccacgt tgtggcgggc gaacgtgcag aggctcctga ccgacttgtt
     1321 gacacagtag taatcgccgt cgcgcacaaa gaaccgttca agccgctcgg gcgagacatt
     1381 gcgtgcaatg ttctcgatat agcggcccgc gcgtgccgtt tccagcgcat cgacgctgac
     1441 atcggagccg aagaactgaa tcttggtgcc ggcgagacgc tcgcccagat actcgacgag
     1501 gcagatggcg atggagtaaa cctcctctcc actcgcgcaa ccgggtaccc agacccggat
     1561 gcttggcgga gcatcatggt cgctgataag acgcgggaag acggttcgga gcagttcgtc
     1621 gaacgttgca gggtcgcgga aaaactcggt cactcgaatc agcaggtcac ggcccagtgc
     1681 cagcgtttca gcggcatcgg aaccgagcaa ggcgacatag tccgagagcg aagacatttc
     1741 gcgcaatgcc atccgacgcg ataacctgcg ttggaccgtg ccacgcttgt agtacgtgaa
     1801 gtcgatgttg caggcattgc gcaacaggcg aaacagaggg cgcaggctct ggtccccggg
     1861 gtccgttgcc ggcctcatag attcgagctc gtccagtgcg cggctggaat agtccccgac
     1921 gcgagcgatt tcgcgggcga tctcacgcgg tgcaagcacg ctgtcgacac aacccagccc
     1981 catggccgcg agcggcatgc tgctgtgacg cgccgacgcc gtgtcttgtg cgaaggtaat
     2041 gccgcccccg ccttgaatgg cctggagacc gagcgcgccg tccgagccgt taccggaaag
     2101 aatcacgccg atcgcattga cgcccaggtc gctcgcgagc gaatcgaaca ggtcgtcgat
     2161 cggcatcggc ggccccaggg tctctccgcg cggctgcagc ctgataaagc gctgtgcaat
     2221 cgacatgctc gtgttgggcg gaatcacgta gacatggtca acctcaatcg ccatgccgtc
     2281 ggccgcttca atgactggca tcgaagtttg tttcgacagg atctccggaa gcaggctggg
     2341 tcggaacggc gcgagatgct ggacgaccag gaaggccatt ccgcaggacg gcgcgattcc
     2401 agcgagcaac tccgagatgg cctcgagtcc gcctgctgaa gcgccaattc ccaccaccgt
     2461 gaaagatcga gtggattctt cgtctgctat ggcgcgggtt gtcacggttg ctcctgtgac
     2521 gaagtgcggt cgtcttacat tcgccggctc ttgtccggcg acaaggagcg aaaaacgaag
     2581 ctggccatcc aacgtaatta tttgaaaggc gaagaagctg atccggcgat tcacagggcg
     2641 tgaaccgccg caaagcaagg acaggctggc cgtgccccaa ttatgcacca gtcggcttaa
     2701 cctggcgctt atagcgccac tgtttatggc gcgggtacga tcgtgcgctg cgtgaagggc
     2761 cgggttggac tcatcgtcga gtcacctcaa tgcacggctt tcccgcaata gaagtcagac
     2821 cgtcgcgacc gggctgaccg gcgagccgac tgcacgcgg
//
LOCUS       DATGBK010001311         1798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_247018, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001311 DATGBK010000000
VERSION     DATGBK010001311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247018"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..501
                     /locus_tag="VKJ77_18325"
     CDS             <1..501
                     /locus_tag="VKJ77_18325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HMC47280.1"
                     /translation="AVQAGYAPYRVPMLKAGVELYEFKPVQAEGDGRPRAGLFGSQSR
                     ASLHAKAYMIDRSILVIGSMNLDPRSASLNTELALVIYNQQIASEAARLFDAGTAPAR
                     AYRVELASPAVLAGLKYTGSPMSPLVWTTEDDGLVRTYNFDPQAGLYRNVLTGLFMLL
                     PVDSQL"
     gene            614..>1798
                     /locus_tag="VKJ77_18330"
     CDS             614..>1798
                     /locus_tag="VKJ77_18330"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006764825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HMC47281.1"
                     /translation="MTDDVRLEKDTFGEIAVPNAKLWGAQTQRSLQNFKISSEKQSPE
                     LIDALAIVKRASAEVNAELKVLAADKAQAIIAAADEILAGIHPDEFPLAVWQTGSGTQ
                     TNMNLNEVIANRASELMGGERGEARKVHPNDDVNRGQSSNDVFPTAMHIAAAVAITKH
                     LVPSLKTLRETLDKKSKAFDRIVKIGRTHLQDATPLTLGQEFSGYVAQLDQGIRHVES
                     TLPHLYQLALGGTAVGTGLNAHPEFAVKVAGVIGKLTGLPFETAPNKFEVMAAADALV
                     FAHGALKTIAAGLMKIANDIRWLSSGPRCGLGELSIPENEPGSSIMPGKVNPTQSEAV
                     TMLCCQVFGNDVAVNIGGASGNFELNVFRPMIAHNVLQSVRLLADGAQSFNDNCAVGI
                     EPN"
BASE COUNT          384 a          529 c          558 g          327 t
ORIGIN      
        1 gcggtacagg cgggttacgc gccgtatcgc gtgccgatgc tcaaggccgg cgtagagtta
       61 tacgaattca agccggtgca ggccgagggc gacggccggc cgcgcgccgg gctgttcggc
      121 tcgcaatcgc gcgcaagcct gcatgccaag gcttatatga tcgatcgcag tatccttgtg
      181 attggatcga tgaacctgga cccgcgctcg gcgtcgctca atacggaact cgcgctggtg
      241 atctacaacc agcaaattgc gagcgaagcc gcacgattgt tcgatgccgg cacggcgccg
      301 gcgagggcgt atcgtgtgga acttgcttcg cctgcggtgc ttgcgggcct gaagtacacc
      361 ggctcgccga tgtccccgct cgtctggacc accgaggacg atggcctggt gcgtacttac
      421 aatttcgacc cgcaagcggg cctttaccgc aatgtattga cgggtctgtt catgctgctg
      481 cccgtcgact cgcagctttg aattttcaga ttctgaaacg tgcaggcaaa ccggattcag
      541 accgcgattg cgcggtccgt atccaaccca cattcaaccc cgaacctgaa gcaagccgaa
      601 ggagcatgaa gccatgacgg acgacgtaag actcgagaag gacactttcg gcgaaatcgc
      661 cgtgccaaac gcaaaactct ggggcgcaca aacgcagcgc tccttgcaga atttcaagat
      721 ttcgagcgag aaacaatcgc cggaactgat cgatgcgctc gcgatcgtga agcgggcatc
      781 ggcggaagtg aatgctgaac tgaaggtgct cgccgccgat aaagcgcagg cgatcatcgc
      841 agctgccgac gagatcctcg ccggcattca tcccgatgaa ttcccgctcg ccgtgtggca
      901 aacgggttcc ggcacgcaga ccaacatgaa cctcaacgag gtgattgcga accgggcgag
      961 cgagttgatg ggcggcgagc gcggcgaagc gcgcaaagtg catccgaacg acgacgtgaa
     1021 tcgcgggcaa tcgtcgaacg acgtgttccc gaccgcgatg cacattgccg ccgcggtcgc
     1081 gatcacaaaa catctcgtgc cttcgctcaa gaccttgcgc gagacgctcg ataaaaaatc
     1141 gaaggcattc gatcgaatcg tgaaaatcgg ccgtacgcat ttgcaggacg cgacgccact
     1201 cacgctcgga caagagtttt cagggtatgt cgcgcaactt gaccagggca tccggcacgt
     1261 tgaatcgacc ttgccgcatc tgtatcaact cgcgctcggc ggcaccgcgg tcggcacggg
     1321 gttgaacgcg catcccgagt ttgctgtgaa ggtggctggc gtgatcggca agctgaccgg
     1381 gttgccgttc gaaaccgcgc cgaacaagtt cgaagtcatg gctgccgccg acgcgctcgt
     1441 gttcgcgcac ggcgcattga agacgatcgc ggcgggcttg atgaagatcg ccaacgacat
     1501 ccgctggctt tcgagcggac cgcgttgcgg gcttggagag ttgtcgattc cggaaaacga
     1561 gccgggcagc tcgatcatgc cgggcaaggt caacccgacc caatccgaag ccgtcaccat
     1621 gctgtgctgc caggtgtttg ggaatgacgt ggcggtgaat atcggcgggg cgagcggcaa
     1681 tttcgagctc aacgtcttcc gcccgatgat cgcgcacaac gtgctgcaat ctgtgcgtct
     1741 gctggcggac ggcgcgcaaa gtttcaacga caactgcgca gtcgggatcg agccgaac
//
LOCUS       DATGBK010001312         2102 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_62306, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001312 DATGBK010000000
VERSION     DATGBK010001312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62306"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            620..1549
                     /gene="argF"
                     /locus_tag="VKJ77_18335"
     CDS             620..1549
                     /gene="argF"
                     /locus_tag="VKJ77_18335"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HMC47282.1"
                     /translation="MTEKKIRHYLQFKDFSLDDYDYVLERARILKRKFKSYETYHPLH
                     DRTLAMIFEKNSTRTRLSFEAGIFQLGGHAVFLSTRDTQLGRGEPIEDAAQVVSRMVD
                     IIMIRTFGQDILERFAENSRVPVINGLTNEYHPCQVLADVFTYYELRGPIAGKTVAWV
                     GDANNMLYTWIEAAQILGFKLRLSTPPGYTLDHSLVSPDSAPFYEEFADPNDACTGAD
                     LVTTDVWTSMGFEAENEVRKKAFADWCVDSDMMARAHPDALFMHCLPAHRGEEVSAEV
                     IDGPQSVVWDEAENRLHVQKALMEYLLLGKLNH"
     gene            complement(1809..>2102)
                     /locus_tag="VKJ77_18340"
     CDS             complement(1809..>2102)
                     /locus_tag="VKJ77_18340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006482213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylenolpyruvoylglucosamine reductase"
                     /protein_id="HMC47283.1"
                     /translation="NPVVSASAFDALKALEPDLVSYKQHDGQFKLAAGWLIDQCGWKG
                     RSIGAAAVHDRQALVLVNRGGASGAQILELAAAIKRDVHARFAVELEAEPVCL"
BASE COUNT          441 a          647 c          590 g          424 t
ORIGIN      
        1 tggttggcaa ggtgaaccgg aaagtcatcg gctgcaacct ccggcgctga actccgcctc
       61 gtctggcagc gtcgcggctg gtaagaccca gcctctttct tcggcccgca tctacccgct
      121 catcggccac ttatcggcca ctcattgacc agactacgac gtcgcccgaa tcgccttgag
      181 cgcgcaatca actcatgatc acgccgttcg cggctggccg ccatacggac tgccgggccg
      241 gtaggcaggt gccagcgaga cgaactcccg tgaccgcaaa ttgctctgac tcccgcaaat
      301 tcaacgttga aaaacaacga taaatctgcg tatttagtcc gcgggttgac gctgcttaag
      361 cccgcgaatg gatctgcttc gtaagcagtc gaaaggtgtc aggactgccg gagaaacctg
      421 gcggattata cagcagaggc cctttttccg cactgcacac aaagcctcta gaccgcgcca
      481 gacggtgtat ggcggcgcgc atcggctatt tgacgacctc gtcaaacgcc ggaaattcct
      541 ttatgctgaa attcgatacc accacgacgg cggcgccgtc cggcgcaatt gccggctgaa
      601 gccgccgtac gcatttttca tgaccgaaaa aaaaattcgc cactatttgc agttcaagga
      661 tttctctctc gacgactatg actacgtgct cgaacgcgca cgtattctca aacgcaagtt
      721 caagagctac gagacctacc atccgctgca cgaccgcacg ctggcgatga tcttcgagaa
      781 aaattcgacg cgtacgcggc tctcgttcga agcgggtatc ttccaacttg gcggccatgc
      841 ggtgtttctc agcacgcgag acacgcagct aggacgaggc gaaccgatcg aggacgcggc
      901 gcaagtcgtg tcgcgcatgg tcgacatcat catgatccgc acgttcggcc aggacattct
      961 tgagcgcttc gccgaaaatt cgcgcgtgcc ggtgatcaat ggtctgacga acgaatatca
     1021 tccgtgccag gtcctggctg acgtcttcac ctactacgaa ctgcgcggcc ccatcgcggg
     1081 gaaaaccgtg gcctgggtcg gcgacgcgaa caacatgctg tacacgtgga tcgaagctgc
     1141 acagattctc ggcttcaaat tgcgcctatc cacgccgccc ggttacacgc tcgaccattc
     1201 gctggtgtcg cccgacagcg cgccgttcta tgaagaattc gccgatccga acgacgcctg
     1261 caccggcgcc gacctggtca ccaccgatgt ctggaccagc atgggtttcg aagccgagaa
     1321 cgaagtgcgc aagaaagcgt tcgccgactg gtgcgtggac tcggacatga tggcgcgcgc
     1381 tcatccggac gccctcttca tgcactgcct cccggcccac cgcggcgagg aagtgagcgc
     1441 cgaagtgatc gacggcccgc agagcgtagt gtgggacgaa gccgaaaaca ggctgcacgt
     1501 ccagaaggcg ctcatggaat atctgctgct cggcaaactc aatcattgag cggcttgaat
     1561 gagctgatcg cgcgctggat gagcacgaag caagcatcac gcgtcaagcg tgcggcgttt
     1621 ccatcgagac gctgtgtcgt ccccaatgcg gaagggtcgc cattttttcg gcagtttttt
     1681 gtgtgatggg cggtgatgtg ttgcttcggc tgccagggtg acttgcctaa gcttcggccc
     1741 gatttgctgc tgccagttgc tgtcacaccc gacgttcgca atagctcttt tttcgcagca
     1801 gctttaaatc aaagacacac cggctctgct tcaagctcga ccgcgaaacg cgcgtgtacg
     1861 tcgcgtttaa tggcggcggc caattccagg atctgcgcgc ccgatgcgcc gccgcggttc
     1921 accagaacca gcgcctgtcg gtcgtgcaca gcggccgctc cgatcgagcg gcctttccag
     1981 ccgcattggt cgatcagcca gcctgcagcc agtttgaact gaccatcatg ctgcttgtaa
     2041 gacacgagat caggttcaag tgccttcaac gcgtcgaagg ccgaggcgct cactaccggg
     2101 tt
//
LOCUS       DATGBK010001313         1882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_84838, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001313 DATGBK010000000
VERSION     DATGBK010001313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84838"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VKJ77_18345"
     CDS             complement(<1..224)
                     /locus_tag="VKJ77_18345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HMC47284.1"
                     /translation="MTIDVAVFGAGRIGKIHAANLAKQPGVRLKYVVDVNKEAAGALA
                     ALHGAQVADVEGALGDASIGATVVCSSTDT"
     gene            complement(214..1110)
                     /locus_tag="VKJ77_18350"
     CDS             complement(214..1110)
                     /locus_tag="VKJ77_18350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HMC47285.1"
                     /translation="MQEDTQDPQETTEILTVDELMQRITEAYDALPRQLKSVATYIEQ
                     HRSNVMMDRTGDIASACGVHPSAVVRFAQRFGFSGFSDLQAIFKQAYTGQNGSAQSYQ
                     QRIRKLIDEKPGKLSGGSVAREFIAASQTGLAELEAGLDDVQFEAAVKMLEQAENIYV
                     VGVRRSFAVASYIVYALQHTAKRVHLVSGFGGMYREQIRSVKKGDVVVAISFAPYGKE
                     TQYCVRAAQHHGAKTLVITDGQLSPLARHASAHLFVKEGSAFAFRSLTSTICLCQALF
                     IALAYRLELNVEESRETGGYDD"
     gene            1322..>1882
                     /locus_tag="VKJ77_18355"
     CDS             1322..>1882
                     /locus_tag="VKJ77_18355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006026469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC47286.1"
                     /translation="MRLCNGRAALRALAAAAALCGAAALSSQAAHAAPDAHFVLISHA
                     PDSDSWWNTIKNAIKQADEDFNVQTDYRNPPNGDIADMARLIEQAAARNYDGVIVTIA
                     DFDVLKGSISKVTAKHIPLITINSGTEEQSAQLGAIMHVGQPEYTAGKAAGEKAKAAG
                     IKSFLCVNHYATNPASFERCRGFAEAL"
BASE COUNT          379 a          598 c          531 g          374 t
ORIGIN      
        1 tgcgtgtccg tgcttgaaca tacgacggtt gcgcctatcg atgcatcgcc gagtgcgcct
       61 tccacatcgg ccacttgcgc gccgtgaagc gcagccaatg ccccggcggc ttccttattt
      121 acgtcaacaa cgtacttcag acgcacaccc ggctgcttcg ccaggttcgc cgcatggatc
      181 ttgccgatcc gccctgctcc gaaaaccgcc acatcaatcg tcatagccgc ctgtctccct
      241 tgattcttct acgttcagtt caagccgata cgcaagcgcg ataaacagcg cctggcacag
      301 gcagatcgtg ctcgtgagcg aacggaacgc aaacgcgctg ccttccttca cgaacaaatg
      361 cgcactcgcg tgacgcgcga gcggcgaaag ctggccatcg gtaatcacca gcgtcttggc
      421 gccgtgatgc tgcgcggcgc gcacgcaata ctgcgtctcc ttgccgtacg gcgcgaagct
      481 gatcgcgacc accacgtcgc ccttcttcac gctgcggatc tgctcgcgat acatgccgcc
      541 gaaacccgac accagatgca cgcgtttggc cgtgtgctgc agcgcgtaga cgatataact
      601 cgcgaccgca aacgagcgcc gcacgccgac cacgtagatg ttctcggctt gttccagcat
      661 cttcacggcg gcttcgaact ggacgtcgtc gagacccgct tcgagttccg ccagcccggt
      721 ctggctcgcc gcgataaatt cgcgcgccac cgagccgccc gacaacttgc ccggcttttc
      781 atcgatcagt ttccggatgc gctgctgata gctctgcgcg gaaccgttct ggcccgtgta
      841 ggcctgcttg aagattgcct ggaggtcaga gaagcccgag aagccgaagc gctgcgcgaa
      901 gcgcacgaca gccgagggat gcacaccgca cgcgctggcg atgtcgccgg tgcgatccat
      961 catcacgttg ctgcgatgct gttcgatgta tgtcgccacg cttttaagct ggcgcggcaa
     1021 cgcgtcgtac gcctcggtga tccgctgcat cagttcgtcg actgtgagga tctcggtcgt
     1081 ttcttgaggg tcttgcgtgt cttcctgcat gccgcgctcg tggtttgttc tgcattcgat
     1141 gcaactgatt atagatatct cgccgaacaa atggaattaa ttttccaaac ttccgatagt
     1201 taaacttcct attgcagaac gatgcaactt gtcctaatct tggtcctgag caagggcgtc
     1261 acgcgcagta ggccaaacgc cggatgctcg ttcagaacaa caaccgagat aggtggagac
     1321 aatgagactt tgcaatggcc gagccgcgct gcgcgcgctc gcggctgccg ctgcgttgtg
     1381 cggcgcagca gcactgagca gtcaggcagc gcacgctgct cccgacgccc atttcgtttt
     1441 gatcagccac gcgcctgatt cggactcgtg gtggaacacg atcaagaacg ccatcaaaca
     1501 ggcggacgag gacttcaatg tccagacgga ctaccgcaat ccgccgaacg gtgacattgc
     1561 cgatatggca cggctgatcg aacaggcagc ggcacgcaac tatgacggcg tgatcgtcac
     1621 cattgccgac ttcgacgtgc tgaagggctc gatctccaag gtcaccgcga agcacattcc
     1681 gctcattacg atcaactccg gcactgagga gcaaagcgcc cagctcggcg cgatcatgca
     1741 cgtcggccag cctgaataca cggccggtaa agcggcgggc gagaaagcga aagcggccgg
     1801 catcaagtcg ttcctgtgcg tcaaccacta cgcaacgaat ccggcgtcgt tcgaacgctg
     1861 ccggggtttc gcggaggcgc tt
//
LOCUS       DATGBK010001314         2082 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_154306, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001314 DATGBK010000000
VERSION     DATGBK010001314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154306"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..1094)
                     /locus_tag="VKJ77_18360"
     CDS             complement(174..1094)
                     /locus_tag="VKJ77_18360"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HMC47287.1"
                     /translation="MNEPSFDTGEFRRALGAFVTGVTVVTTIQPDGSPRGFTANSFTS
                     VSLDPALILVCIAKTASSHPVFSETQRFAVSVLAEDQRPVSGVFASKSADKFAQVGWH
                     ARRTGSPVMDGAAASFDCETHQVVDAGDHIILIGRVVDFTHTSATPLGYCRGAYVDFS
                     LSQEALAATGQRAQVGAILEHPAGLVLIETASGALQLPIGTRLEPLADAASLRGVLSG
                     YRLNANLDFLFAVFEEKGVTHIYYRGRIVDDAPAGANVRYVPLGAIPWDRIRDPAVES
                     MLRRYVKERTEDAFGIYVGDVEKGMVQALG"
     gene            complement(1193..1987)
                     /locus_tag="VKJ77_18365"
     CDS             complement(1193..1987)
                     /locus_tag="VKJ77_18365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC47288.1"
                     /translation="MNGVFDGTAYSVAGEGPALVLIHGVGMNRSVWAPQVDALQLCFR
                     VVSYDMLGHGASRLPAASPTLDEYAGQLAALLDHLQIDAAHVVGHSMGSLIALEFALQ
                     YPQRVASVAALNAVYDRTPTQRAAVMQRAASLEDGGLEQPSIDATVARWFDDPVPGHL
                     AQVAELVRSLLETVNPEGYARTYRLFASSDQAHVGRLPQLAVPALFMTGERDPNSSPA
                     MSHSMAAAAPRGRAEIIANERHMMNVTAPAIVNQRLVQFIREASGT"
     gene            complement(2010..>2082)
                     /locus_tag="VKJ77_18370"
     CDS             complement(2010..>2082)
                     /locus_tag="VKJ77_18370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004531333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid synthesis family protein"
                     /protein_id="HMC47289.1"
                     /translation="GGRPHHRIGDRYQDLKELGSNEA"
BASE COUNT          461 a          733 c          546 g          342 t
ORIGIN      
        1 tatcgcggtc ggttcggcga gccctggcaa ttcggcaagg ttgactacgg tcccccagcc
       61 gaggcatcgg tttagatcgg gtcattgaca aacctcgatg cgcgccgctc gctcgggacg
      121 gccgtggatg aacgcgtcgg cgaggttatc ggccccagtc gagtgcgaac gaatcaccct
      181 aacgcctgca ccatcccctt ctccacatcg cctacataaa taccgaacgc atcctccgtt
      241 ctctccttca catagcgtcg cagcatagac tcgaccgcgg ggtcacgaat cctgtcccag
      301 ggaatcgcgc cgagcggcac ataccgtaca ttcgcgccgg caggtgcatc atcgacaatg
      361 cgcccccgat agtagatatg ggtaacgccc ttctcctcaa acaccgcaaa cagaaaatcc
      421 agattcgcat tcagccgata cccgctcagc acgccgcgca aactagccgc atcggcaagc
      481 ggttccaacc gcgttccaat gggtaattgc aacgcgcccg acgccgtctc gatcaataca
      541 agacccgcag gatgctcgag gatcgcccca acctgagccc gctgaccggt cgcggccagc
      601 gcctcctgcg acaaactgaa atccacataa gcaccacggc aataccctag cggtgtcgcg
      661 ctcgtgtgcg tgaaatccac cactcgccca atcaggatga tgtggtcccc cgcatccacc
      721 acctgatgcg tctcgcagtc gaaactcgcc gccgcgccat ccatgaccgg actgccggtg
      781 cggcgcgcat gccagccgac ctgcgcaaac ttgtccgcac tcttcgaagc aaacacgccc
      841 gatacaggcc gctgatcttc agcgagtacg ctgaccgcaa aacgctgcgt ttccgaaaac
      901 accggatggc tagaggccgt cttcgcgata cagaccagga tcaacgccgg atcaagcgac
      961 acggacgtaa acgaattcgc agtaaaacca cgcggcgaac catcgggctg aatggtcgtc
     1021 accacagtca cgcccgtcac gaatgcgccc aatgcacggc gaaactcgcc agtatcgaag
     1081 gaaggctcgt tcatgctttt gctccttaaa ttagccgctg atacataggt acacaggcac
     1141 acaggcacac aggcacacag acccaaagtg actcaaccac tcggtcaagc gctcaggtgc
     1201 cactcgcctc acgaataaac tgcaccaacc gctggttcac gatcgccggc gcggtgacgt
     1261 tcatcatatg ccgctcattc gcaatgatct cggcacgtcc tcgcggcgca gcagcggcca
     1321 tcgaatggga catggccgga ctcgaattcg gatcgcgctc gccggtcatg aacagcgcgg
     1381 gcacggcgag ctgcggcaaa cgcccgacgt gcgcctggtc cgaactcgca aacaaccggt
     1441 aggtccgcgc ataaccctcc ggattcacgg tctccagcaa cgaacgcaca agctccgcca
     1501 cctgcgcgag atgacccggc accggatcgt cgaaccagcg cgcaacggtt gcatcaatgc
     1561 tcggttgctc aagccccccg tcttccaacg acgccgcgcg ctgcatgacc gcggcccgct
     1621 gcgtcggcgt gcggtcgtac accgcgttca gcgcagccac gctcgccacc cgctgcggat
     1681 attgcagcgc aaactcaagc gcgatcagcg agcccatcga gtgaccgact acatgcgctg
     1741 catcaatctg caaatgatcc agcagcgcgg cgagctgtcc agcgtattca tcgagcgtcg
     1801 gcgacgccgc cggtaagcgg ctggcgccat gacccagcat gtcgtacgac acgacacgaa
     1861 aacataactg cagcgcgtcc acctgaggcg cccacacgct gcgattcatc cccacgccgt
     1921 ggatcaggac aagcgccggg ccctcgcccg ccacgctgta tgccgtgccg tcgaacacgc
     1981 cgttcatcga cgcacggcta gtcgtcgttt catgcttcat tggacccaag ctccttcaga
     2041 tcctgatagc ggtcgccaat ccgatgatgc ggcctcccgc ca
//
LOCUS       DATGBK010001315         2499 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_224311, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001315 DATGBK010000000
VERSION     DATGBK010001315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2499
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224311"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /locus_tag="VKJ77_18375"
     CDS             complement(<1..480)
                     /locus_tag="VKJ77_18375"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47290.1"
                     /translation="MVGPIDPKIPNSGATRRAAVGLILGAPLLGACAGVQSALTNPFA
                     SNGGDKPAGPAQQPQAVGTGQVKVGLILPLSASGNAGVAAQSMKNAAEMALAEFQNPN
                     IQLLIKDDNGTAQGAQQGTQQALDEGAEIILGPLFALSVPAAAQLTRTRGIPMIAFST
                     "
     gene            856..1812
                     /gene="rsmI"
                     /locus_tag="VKJ77_18380"
     CDS             856..1812
                     /gene="rsmI"
                     /locus_tag="VKJ77_18380"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: protein motif:HMM:TIGR00096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HMC47291.1"
                     /translation="MRAKPDLSRVATASANPTSRTFAVAGQTLTAPKADPGLYLVATP
                     IGNLGDITLRALETLAGVDIIACEDTRVSRRLTERFGISASLTPYHEHNAAVARPKIL
                     DRLAQGGSVALVSDAGTPLISDPGFKLVREACAAGHAVIALPGASSVLTALAVAALPT
                     DRFFFEGFLPSKQAARRARLGELSRIEATLVMFESGNRVQDTLADLATIMGERDGAIC
                     RELTKLHEEILRGPLKLLAQNAGDLETRGEFVLVVGPPAAHAQVMTPAELDAVLRSSL
                     DSGSVKDAVAHAVEISGRPRREVYARALELARQTHAGDHEED"
     gene            1799..2206
                     /locus_tag="VKJ77_18385"
     CDS             1799..2206
                     /locus_tag="VKJ77_18385"
                     /inference="COORDINATES: protein motif:HMM:NF009151.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HMC47292.1"
                     /translation="MKKIDRPTTDLPKAAAPERLAAFQTGLSAESRAAAWLVAKGYRI
                     LARRYRTPYGEIDIVARRRNLLAFVEVKARATLDDAAYAVTPRQQQRIIDAASAWLMA
                     HPEHASFDLRFDAMLIAPGRLPRHLTGAFDASV"
     gene            2252..>2499
                     /locus_tag="VKJ77_18390"
     CDS             2252..>2499
                     /locus_tag="VKJ77_18390"
                     /inference="COORDINATES: protein motif:HMM:NF014947.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47293.1"
                     /translation="MTLKVAVQMDPIARINVRGDSTFALLLEAQKRGHALSYYTPDKL
                     SLRGKDVVAPVQSLGVRDEVGNHFTLGDPVRTNLASFDV"
BASE COUNT          460 a          820 c          749 g          470 t
ORIGIN      
        1 ggtcgagaac gcgatcatcg gaatgccgcg cgttcgcgtc agttgcgctg ccgccggcac
       61 cgacaacgca aacagcggcc cgaggatgat ttccgcgccc tcgtccagcg cctgctgggt
      121 tccctgctgg gccccctgtg ccgtgccgtt gtcgtccttg attagcaact ggatgttcgg
      181 attctggaat tcggccaacg ccatttcggc ggcgttcttc atcgattgcg ccgcaacgcc
      241 ggcgttgccc gatgccgaca gcggcagaat caatccgacc ttgacctgac cggttcctac
      301 cgcctgcggc tgctgcgctg ggcccgcagg cttgtcgcct ccgttcgacg cgaacggatt
      361 ggtcagcgcc gactgcacgc cggcgcaggc gccgagcaga ggggcgccaa ggatcaagcc
      421 aacggcagcc cgccgcgtgg ctcccgagtt cgggattttc ggatcgatcg ggcccaccat
      481 ggtatttctt ccgttaaccg acccagaccg atccggcatt gcctgcgact gatctggagc
      541 ggggattaag gcatattgtc ggcgaatagt taaccggaac aaaagcttta gcctcgtctg
      601 cggacgccgt atgcggcttt tcaatcacag tcggcagggg agtgcaaaag cggtatccac
      661 gtcacctcat gatcctctag tggagcggat ttgacattcg ctacccacct tgccgcgagt
      721 ccgggaagcg aatgtcaaat ccaaagctcc actagaagtc tatgtttgct agtggtccta
      781 tagattctaa catttgcgca ggtacacgct gaaacgggac gcaaatgtta gaatcagacc
      841 actagattgc aggtcatgcg cgcaaaaccc gacctttctc gtgtcgcaac agcctctgcg
      901 aaccccacct cccgtacttt cgccgtcgcc gggcaaacgc tgacggcgcc aaaggcggat
      961 ccgggtctct atctggttgc gactccgatc gggaaccttg gcgatatcac cctgcgcgcg
     1021 ctggagaccc ttgccggcgt cgatatcatt gcctgcgaag atacccgggt gtcccgccga
     1081 ctgaccgaac gattcggcat ttcagcgagc ctcacgccct atcacgaaca caacgccgcg
     1141 gtggcacggc cgaaaattct cgaccgtctg gcacagggcg ggagcgttgc gctggtatcc
     1201 gatgccggca cgccgctgat ttccgatccc ggattcaagc tggtgcgcga agcctgcgct
     1261 gccggccatg cggtgatcgc gctgcccggc gcgtcttcgg tgctgaccgc gcttgcggtg
     1321 gcggcgctgc ctaccgaccg gtttttcttc gagggattcc tgccgtcgaa acaagcggcg
     1381 cggcgcgcac ggcttggcga actgtcccgc atcgaagcga cgctggtgat gttcgaatcc
     1441 ggcaatcgcg tgcaggacac gctcgccgat ctcgctacga tcatgggcga gcgcgacggc
     1501 gcgatctgtc gcgaattaac caaactgcat gaggaaatcc tgcgcggacc gctcaagctc
     1561 ctcgcgcaaa acgccggcga cctcgagacg cgcggcgaat tcgtgctggt ggtcgggccg
     1621 cctgcggcac acgcgcaggt catgactccg gccgaactgg acgcggtgct gcgatcgtcg
     1681 ctcgacagcg gcagcgtcaa ggatgccgtg gcccatgccg tcgaaatttc cggacggccg
     1741 cgccgcgagg tctatgcacg cgcgctcgaa ctcgccaggc aaacccatgc gggcgatcat
     1801 gaagaagatt gatcgtccca cgacagatct tccgaaggct gccgcgcccg aacgcctcgc
     1861 cgcattccag accgggcttt cggccgagag ccgcgctgca gcgtggctgg tagcgaaggg
     1921 ttatcggatt ctggcgcggc gctaccgcac gccttacggc gagatcgata tcgtggcacg
     1981 ccggcgcaat ctgctggcct ttgtcgaagt gaaagcccgc gcgacattgg acgatgcagc
     2041 ctatgccgtg acgccgcgcc agcagcagcg catcatcgat gcggcttcgg cctggttgat
     2101 ggcgcacccc gaacatgcca gtttcgacct gcgttttgat gcgatgctga ttgcgccggg
     2161 ccgtctgcca cgccatctca ccggagcgtt cgacgccagc gtctgaccga cctaccctca
     2221 agacatcaat ccccaagccg gacaatcaaa gatgaccctg aaagtcgccg tccagatgga
     2281 ccctatcgcg cgcatcaacg tgcgcggcga ttccaccttc gccctgctcc tggaggcaca
     2341 gaagcgcggc cacgccctct cctattacac gccggataaa ttatccctgc gcggcaagga
     2401 cgtcgtcgca ccggtgcagt cgctcggcgt gcgcgacgag gtgggcaatc atttcaccct
     2461 cggtgatccg gtgcgcacga acctcgcctc tttcgacgt
//
LOCUS       DATGBK010001316         2244 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_224344, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001316 DATGBK010000000
VERSION     DATGBK010001316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224344"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..123)
                     /locus_tag="VKJ77_18395"
     CDS             complement(<1..123)
                     /locus_tag="VKJ77_18395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012363463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HMC47294.1"
                     /translation="MNTSVKPRAVIVGGSLSGLFTATTLRHAGWDVDVFELSPNE"
     gene            complement(120..800)
                     /locus_tag="VKJ77_18400"
     CDS             complement(120..800)
                     /locus_tag="VKJ77_18400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HMC47295.1"
                     /translation="MRNLPQERAVQAIEISVNYDFICPWCWIGHLNLASGIRAANLPV
                     PVSIRYVPFELNPTMPADGMDRREYRTAKFGSWVRSQGMDAQVAATGVAAGAQFNYDK
                     VGRTPNTRLAHQLMQYALSIGDAHKTEALYQSIFAAYFSEGRDIGLPGTLVEIAAKNG
                     FDAAAAEDYLTHGRGLEKVLEAQRLAQQQGIRSVPTVFIAGEAISGAQPPAVFASALR
                     AALERSAA"
     gene            892..1815
                     /locus_tag="VKJ77_18405"
     CDS             892..1815
                     /locus_tag="VKJ77_18405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47296.1"
                     /translation="MDKLVALTTLLEVAEAGGFSKAAQRLGVATSSVTRLMDALEASL
                     GTALLTRTTRRVTLTDAGTAYVEQISKVLDDLAEADDSIFDSGAAPVGALRISVPTAY
                     SRLCLAPHLATFLSEYPRVVLDVVVADHYVDLAAERIDVAIRIGLPSRDENLVVRKLA
                     DNKRFVVASHEYLERHGTPAEPQALANHECLRFAYGGPHRATRQVWTFRHGATEERVE
                     VRGHLIANNPDVLFEAVLAGRGIALMPEWLVAPEIGAGHLLRLFENIEVNPHAGDSVI
                     YAAYLPNRRHSSKVRTFVQFLAVRVRTPTVE"
     gene            complement(1881..>2244)
                     /locus_tag="VKJ77_18410"
     CDS             complement(1881..>2244)
                     /locus_tag="VKJ77_18410"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HMC47297.1"
                     /translation="GHAAGDLALQTIGRLCSEIWRQPDIVARLGGEEFAVLTKVDDAS
                     EAIGTANELRRRLASTPLELDGVRFTVTLSFGISLASQTGRETLDALLLRADKLLYSA
                     KLGGRNCIVSDIENSTSH"
BASE COUNT          424 a          692 c          684 g          444 t
ORIGIN      
        1 ttcattcggc gacagttcga acacatcgac gtcccatccc gcgtggcgca acgtggtggc
       61 cgtgaacaat ccgctcaacg agccaccgac gatcactgcg cggggcttca ctgaggtgtt
      121 catgcagcgc tccgttcgag cgctgcccgc agcgcgctgg cgaataccgc cggtggttgc
      181 gcaccgctga tcgcttcgcc cgcgatgaag acggtcggca ccgaacgaat gccttgctgt
      241 tgagcaagcc gctgcgcttc gagtaccttt tcaaggcctc gaccgtgcgt caggtagtcc
      301 tccgcagcgg cagcgtcgaa gccgtttttc gcggcaatct caaccaaggt gccgggcagg
      361 ccaatatcac gtccctccga gaagtacgcg gcgaaaatcg actggtagag cgcttcggtc
      421 ttgtgcgcgt cgccaatact caacgcgtac tgcatcaact gatgagcgag gcgtgtgttc
      481 ggcgttctgc cgaccttgtc gtagttgaat tgcgcgccgg cagccacgcc cgtcgccgca
      541 acctgcgcgt ccataccttg cgagcgtacc caactgccga acttggccgt ccggtattcg
      601 cgccggtcca ttccgtccgc gggcatcgtg gggttcagtt cgaacggcac ataccggatt
      661 gaaacgggta ccggcaggtt ggctgcgcga attcccgacg caagattcag gtggccgatc
      721 cagcaccacg gacaaatgaa gtcgtagtta acagagattt cgatggcttg tacggcgcgc
      781 tcctgaggaa gattacgcac aggatatcga ttgcaattcg ttagtagaat acgttcgcag
      841 agcaatctcg cgttgcgtgc cacgcaacgc taagtcagcg gagccatcaa agtggacaaa
      901 ctggtcgcat tgacgacgtt actggaagtg gctgaggccg gaggcttttc caaggctgcg
      961 cagcgcctgg gtgtggccac ttcgtcggta acgcgcctga tggatgcgct cgaagcgtcg
     1021 cttggtacgg cgctgctgac gcgtaccacg cggcgcgtca ccctcaccga cgcaggcacc
     1081 gcgtacgtcg aacaaatcag caaggtgctg gacgaccttg ctgaagccga cgacagcatc
     1141 ttcgacagcg gcgcagcgcc cgttggtgcg ctgcgcatct ctgtacctac ggcatatagt
     1201 cggctgtgcc tggcgcccca ccttgccacc ttcctgagcg agtatccccg tgtggtcctc
     1261 gacgtggtgg ttgccgacca ctatgtcgat ctggccgcag agcgtatcga tgtcgcgatt
     1321 cgaatcggct tgccctcacg cgatgaaaac ctggtcgtca ggaagctggc cgacaacaag
     1381 cgttttgtcg tggcgagcca tgagtacctg gagcggcacg gcacgcctgc tgaaccgcag
     1441 gcgctggcta accacgaatg cctgcgcttc gcgtatggcg gacctcatcg cgctacaagg
     1501 caggtgtgga cgtttcgcca tggagccacg gaagaacggg tcgaagtgcg tggccacctg
     1561 attgccaata accctgacgt gctgttcgaa gccgttctcg cgggcagggg cattgcactg
     1621 atgccggagt ggctggtggc gccggagatc ggtgcgggcc acttgctgcg cctgtttgaa
     1681 aacattgagg tcaatccgca tgcgggcgat tcggtgatct acgccgctta tctgccgaat
     1741 cgccgccatt cgagcaaggt acgcaccttc gtgcagttcc tcgctgtacg cgtgcgaacg
     1801 cctacggtgg aatgatcggc ggcaggcact tctgcgctgc aagggcaacc gcgacggctg
     1861 cacgcgcctc acagtagata ctagtgactt gtcgagtttt cgatgtccga cacaatacag
     1921 ttacgcccgc ccagcttggc gctgtaaagc agcttgtcgg cacgtagcag aagggcgtcg
     1981 agtgtctcac gcccggtttg cgaagccagc gagatcccga agctcaacgt gaccgtaaag
     2041 cggacaccat ccagttccag cggcgtggac gctagccgcc gccgcagttc gttggcggtg
     2101 ccaatggcct cgctggcgtc atcgaccttt gtcagcacgg cgaactcctc gccgcctaag
     2161 cgtgccacga tgtccggctg acgccatatc tcgctgcata gtcttccaat cgtctgcagc
     2221 gccagatcac cggcggcgtg gccc
//
LOCUS       DATGBK010001317         1615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_270829, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001317 DATGBK010000000
VERSION     DATGBK010001317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270829"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VKJ77_18415"
     CDS             complement(<1..548)
                     /locus_tag="VKJ77_18415"
                     /inference="COORDINATES: protein motif:HMM:NF040248.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47298.1"
                     /translation="MIIYGILSEAPGGPLTPYLQNPHITEADIIRLKHNMGLDQPIPV
                     QYALWLTHIVRGDFGYSTSNSMDVLAAIYDRMGATLTLMGSAFGFSLIVGVSLGIYSA
                     LKPYTWQDYTITTFAFFGQSMPVFWLALMMQLAFSVMGITMFGYHFALPSAGLSSQDN
                     FDLGDRITHLILPTLVLSLLQIA"
     gene            complement(678..1496)
                     /locus_tag="VKJ77_18420"
     CDS             complement(678..1496)
                     /locus_tag="VKJ77_18420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-5-aminohexanoate cleavage protein"
                     /protein_id="HMC47299.1"
                     /translation="MEPLIITVAPVGAELTPDQTPHLAVTPAQLGDVARAIRAAGASM
                     IHVHCRNNDGTNTHDVARFRAAYDAIRASSDLIVQFSTGGAIGMTPAERSAPLELRPE
                     MATLSCGTVNFGDDIFENSFPIMRGILAEMKKYDVMPALEIFDRGHISNALALQKQGH
                     LTLPQHAEFVLGVPGGLDASVENLVDCVRALPPGSTWSVAGIGRMQLPLAVTAIAMGG
                     HVRVGLEDNIYYSKGRLASNEELVARVVRIATEMGRPVATPSQARKVLRLPKLG"
BASE COUNT          350 a          484 c          471 g          310 t
ORIGIN      
        1 gcgatttgta ataaggaaag cacgagcgtc ggcaagatca aatgcgtgat tcgatcgccc
       61 aaatcaaagt tatcttgcga cgataaaccg gccgacggca gcgcaaagtg atagccgaac
      121 atcgttatgc ccatcacgga gaacgccagc tgcatcatga gcgcgagcca aaacaccggc
      181 atcgattgac cgaaaaacgc gaaggtcgta atcgtgtaat cctgccatgt gtaaggtttc
      241 agagccgagt agataccgag cgagacgccg acgatcagcg aaaacccgaa tgcggaaccc
      301 atcagcgtga gcgtcgcacc catacgatcg tagattgcag ccagcacatc catcgagttg
      361 gacgtggaat atccaaaatc accgcgcaca atgtgcgtga gccacaacgc atactgcacg
      421 ggaatgggtt gatcgagtcc catgttgtgt ttgagccgaa tgatatcggc ttcagtaatg
      481 tgcgggttct gcagatacgg cgtgagcggg ccacccggcg cttcgctgag gattccgtag
      541 atgatcatcg agatgagcag taacagcgga atgttctgca gagtgcggcg gatgatgtac
      601 gtgagcaggg gctgacctcc ggcaatgaac cgacccccct tccggggtgt cggggcgcgc
      661 tcctggcgtg aggttgtcta gccgagcttc ggcagtctta atacttttcg cgcctgagac
      721 ggcgtggcaa ccgggcgccc catttctgtt gcaatgcgaa cgacgcgagc gaccagctct
      781 tcattggacg caagccgacc cttactgtaa tagatattgt cctcaagacc gacgcgcacg
      841 tgaccgccca tcgcaattgc ggttacggcc agcggcagtt gcatgcgccc gatgcccgcg
      901 acggaccacg tcgaaccggg cggcaaggcg cgcacgcagt cgacgagatt ctcgacactc
      961 gcgtcgagcc cgccgggcac gccgagaacg aactcggcat gttgcggcaa cgtcaggtgc
     1021 ccttgctttt gcaacgcaag ggcgttgctg atatgccccc ggtcgaagat ctcaagtgcc
     1081 ggcatcacgt cgtatttttt catttctgcc agtatgccgc gcatgatcgg aaaactgttc
     1141 tcaaaaatat catcgccgaa attcaccgtg ccgcaactga gcgtcgccat ttcggggcgc
     1201 agctccagcg gagcggaacg ctcggccggc gtcatcccga tcgcgccgcc ggtcgaaaat
     1261 tggacgatca gatcgctgct cgcgcgaatc gcatcgtacg cggcgcgaaa gcgcgcgacg
     1321 tcgtgtgtgt tcgttccatc attattgcga caatgcacgt gaatcatcga cgcgcccgcc
     1381 gctcgaatcg cgcgcgcaac atcgccgagt tgcgccggcg tcaccgccaa gtgcggcgtt
     1441 tgatcgggcg tcaattcggc ccccaccggt gcaacggtaa taatgagcgg ttccatcgtt
     1501 actcgccttc gccgtccatc ggacgcgccc gctcgctatt cgccagggcg tcgcgtacgc
     1561 tgccggcctg ccgaatgaga gcctcagcca atattcgccg cgcttgcgtc tcggc
//
LOCUS       DATGBK010001318         1562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_131183, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001318 DATGBK010000000
VERSION     DATGBK010001318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131183"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..741)
                     /gene="lptA"
                     /locus_tag="VKJ77_18425"
     CDS             complement(31..741)
                     /gene="lptA"
                     /locus_tag="VKJ77_18425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0001530 - lipopolysaccharide binding
                     [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HMC47300.1"
                     /translation="MNKPFLRPESGRLCAARAAFLRRAARIVQFGIAATCVALPLAAS
                     LLAFAPAAYAERADNDKPLNIEADNMTYDDLKQVNIFTGHVVATKGTIIIKADRVDVT
                     QDPQGYQYATGTSTGGALSYFRQKRDGLDEYIEGNAVRIDYDGKQDLTTLTTRAVVRR
                     LVGLTKIQDEVHGSVITYDGQKDFYTAKAGPDVAGPGNPTGRVRAMLAPRNGGAAPLT
                     GAPATLTPSTKMQGTQQP"
     gene            complement(790..1389)
                     /gene="lptC"
                     /locus_tag="VKJ77_18430"
     CDS             complement(790..1389)
                     /gene="lptC"
                     /locus_tag="VKJ77_18430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HMC47301.1"
                     /translation="MQRPKKLTSALPVVAMAALAGITYWLMQATMPKPQEPERPKEHA
                     PDYFATNFSVSELDTTGTTQYRLTAISMVHYEDDEVSDLTKPAMRMFQPLRPTVTATS
                     ERGTVNGDVSIVDLYENAHILRVAGYGDPQMTADSVHFRILVNDDVIETEKPVKLQRG
                     PSVMTGDGMNYNNATRVMKLFGTVRGQIAASDTLGTSSK"
     gene            complement(1395..>1562)
                     /locus_tag="VKJ77_18435"
     CDS             complement(1395..>1562)
                     /locus_tag="VKJ77_18435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011886052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonate 8-phosphate
                     phosphatase"
                     /protein_id="HMC47302.1"
                     /translation="CGFAAAPANAHEEVLNRVHFATAKRGGEGAVREVCDVILRAQNR
                     YDGLLAAALGV"
BASE COUNT          267 a          461 c          506 g          328 t
ORIGIN      
        1 ccggcttacg atgaggcatg gcgggcgaat tcacggctgc tgcgttcctt gcatcttggt
       61 ggacggcgtc agggtggccg gcgcaccggt cagcggcgcg gcgccaccgt tacgcggggc
      121 gagcatggcg cgcacgcggc cagtcgggtt gcctggaccg gcaacgtcag gtccggcttt
      181 cgccgtatag aagtctttct ggccgtcgta ggtaatcacg ctgccgtgca cttcgtcctg
      241 gatcttggtg agacccacaa gacggcgcac aacggcacgc gtggtcagcg tggtgagatc
      301 ctgcttgccg tcgtagtcga tccgcacggc attgccttca atgtattcat cgaggccgtc
      361 acgtttctgg cggaaatacg agagggcgcc gccggtagac gttccggttg cgtactgata
      421 cccctgcgga tcctgcgtca cgtcgacacg gtccgccttg atgatgatcg tgcctttggt
      481 cgcgacaacg tggcccgtga atatgttgac ctgcttcagg tcgtcatagg tcatgttgtc
      541 cgcttcaata ttcagcggct tgtcgttgtc ggcgcgttcg gcgtaggcgg ccggggcgaa
      601 agccaatagc gaggccgcca gaggcaacgc cacgcatgtc gccgcgatcc cgaattgcac
      661 gatacgtgcg gcgcggcgca aaaaagcagc gcgcgctgcg cacagacggc cggattcggg
      721 tcggagaaac ggtttgttca tgcagtcaca cttgaatgga ttaagcgcaa ttcgtcggaa
      781 ctgccggggt tatttggatg aggtgccgag ggtatcagag gcggcgatct ggccgcgtac
      841 cgtcccaaac agcttcatta cccgggtcgc gttgttgtag ttcatgccat cgcccgtcat
      901 cacagacgga ccgcgctgaa gtttaaccgg cttttctgtt tcgatgacat cgtcgttcac
      961 aaggatgcga aagtgcacgg aatccgccgt catctgcggg tcgccgtagc ctgccacgcg
     1021 caaaatgtgg gcgttctcgt acaagtcgac aatcgagacg tcgccgttca ccgtgccccg
     1081 ctcggacgtt gccgtcacgg tcggccgcag cggctggaac atgcgcatgg cgggtttcgt
     1141 gaggtcgctg acttcatcgt cctcgtaatg caccatcgaa atcgcagtca gccgatactg
     1201 cgtcgtgccg gtggtgtcca gttccgagac cgaaaagttc gtcgcgaaat agtcgggcgc
     1261 gtgttccttc gggcgctccg gttcctgggg cttgggcatc gtagcctgca tcagccagta
     1321 ggtgatccct gccagtgcgg ccatggcgac cacgggcagc gccgaggtca gtttcttggg
     1381 tcgttgcatg gtattcagac tccgagagcc gcggcaagca ggccgtcgta gcgattctgc
     1441 gcgcgcagga tgacgtcgca gacttcacgc accgcgcctt cgccgccgcg cttggctgtg
     1501 gcgaaatgta cgcggttcag cacttcctca tgcgcgttgg cgggcgccgc tgcgaaaccg
     1561 ca
//
LOCUS       DATGBK010001319         1803 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_62426, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001319 DATGBK010000000
VERSION     DATGBK010001319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62426"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /locus_tag="VKJ77_18440"
     CDS             <1..729
                     /locus_tag="VKJ77_18440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006024738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HMC47303.1"
                     /translation="LDNYEFLATDPAFLPSIVHTLTLIGSVLLITVVGGVLLAVLFDR
                     KFYGQGIARLLVIAPFFVMPTVSALIWKNMILHPVYGLIAQLMRALGLQPIDWFGDYP
                     LFAVIVIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGAFAMFFYITLPHLKRAI
                     AVVVMMETIFLLSIFAEIYTTTGGGPGTATTILSYLIYALGLQQFDVGLASAGGILAV
                     VLANVVAFFLVRMLAKNLKGEYES"
     gene            726..1574
                     /locus_tag="VKJ77_18445"
     CDS             726..1574
                     /locus_tag="VKJ77_18445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HMC47304.1"
                     /translation="MSHPVTATTSVPILDTLKRGVLGVIAWLFALLLFFPIFWMTITA
                     FKTEQQAYSSSLIFTPTLDSFREVFARSNYFAFAGNSIMISVGVTVICLLFAVPCAYA
                     MAFFPTKKTQKVLLWMLSTKMMPSVGVLVPIYLLWKNTGMLDTVWGLIIVYTLINLPI
                     AVWMSYTYFNEIPRDILEAGRIDGAATWQEIVYLLMPMSLPGLASTALLLVILSWNEA
                     FWSINLSSSNAAPLTVFIASYSSPEGLFWAKLSAASLLAVAPILIVGWLSQKQLVRGL
                     TFGAVK"
     gene            1645..>1803
                     /locus_tag="VKJ77_18450"
     CDS             1645..>1803
                     /locus_tag="VKJ77_18450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004552991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HMC47305.1"
                     /translation="MLAPADALDGHLLICDCDGVLIDSEAIAGRVLVQEMEALWPGVD
                     AEPIVTPLL"
BASE COUNT          297 a          526 c          558 g          422 t
ORIGIN      
        1 ctcgataact atgaattcct ggccactgat ccggccttcc tgccgtccat tgttcacacg
       61 ctgacgctga tcggatcggt gttgctgatc accgtagttg gcggcgtgct gcttgccgtg
      121 ttgttcgatc gcaagttcta cggtcagggc attgcgcggc tgctggtgat tgcgccgttc
      181 ttcgtcatgc cgacagtcag cgcgctgatc tggaagaaca tgatcctgca tccggtgtat
      241 ggcctgatag cgcagttgat gcgagcgttg gggctccagc cgatcgactg gtttggcgac
      301 tatccactct ttgcggtgat cgtgattgtt gcgtggcagt ggctgccgtt cgcgttcctg
      361 attctcttca cggcgatcca gtcgctggac caggagcaga aggaagcggc gcggatagat
      421 ggcgccggcg cgttcgccat gttcttctac atcacgttgc cgcacttgaa acgcgctatt
      481 gccgtggtgg tgatgatgga aaccattttc ctgctctcca tcttcgctga aatctatacg
      541 acaaccggcg gcggcccagg cactgcgacc accatcctgt cgtacttgat ctacgcgctc
      601 ggcctgcagc aattcgacgt cggcctggct tccgccggcg gcattctggc agtcgtgctg
      661 gcgaacgtcg ttgcgttctt cctggtgcgc atgctcgcga agaacctgaa aggggagtac
      721 gaatcatgag ccatcccgtt accgcaacaa cgtccgtgcc gatcctcgac acgctcaagc
      781 gtggcgtgct gggtgtgatc gcgtggctgt tcgcgctgct gctgtttttc ccgatcttct
      841 ggatgaccat cacggcattc aagaccgagc agcaagcgta ttcctcttcg ctgatcttca
      901 cgcccacgct ggacagtttc cgcgaggtgt tcgcgcgcag taactacttt gcgttcgcgg
      961 ggaactccat catgatctcg gtcggcgtca cggtgatctg cttgttgttc gccgtgccgt
     1021 gcgcctacgc gatggcgttt ttcccgacca agaaaacgca gaaagtactg ctgtggatgc
     1081 tctcgacgaa gatgatgccg tcggtgggtg tgctcgtgcc gatctacctg ctgtggaaaa
     1141 acaccggcat gctcgacacg gtgtgggggt tgatcatcgt ctacacgctg atcaacctgc
     1201 cgatcgccgt ctggatgtcc tacacgtact tcaacgaaat cccgcgcgac atcctggaag
     1261 cggggcggat agatggcgcg gcgacgtggc aggagatcgt ctacctgctt atgccgatgt
     1321 cgctgcccgg gctcgcgtcc accgcgttgc tgctcgtgat cctgtcgtgg aacgaggcgt
     1381 tctggagcat caacctgtcg agttcgaacg cggcgcccct gacggtgttc atcgcgtcgt
     1441 attcgagtcc ggaaggtttg ttctgggcca agctttcggc agcttcactg ctggccgtgg
     1501 cgccgatcct gattgtcggc tggttgtcgc agaagcagct ggtgcgcggc ctgaccttcg
     1561 gcgcggtgaa atgaggtgga acccgaggtg gaacccgagg ccgatccagt gaacctgaac
     1621 ttgtcccaag ccggcgtacc ggacgtgctc gctccagccg atgccctcga cgggcatctg
     1681 ctgatctgcg actgcgacgg cgtgttgatc gacagcgaag cgattgcggg acgcgtgctc
     1741 gtgcaggaga tggaggcgct ctggccaggc gtggatgccg agccgatcgt cacgccgctg
     1801 ctc
//
LOCUS       DATGBK010001320         3621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_224363, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001320 DATGBK010000000
VERSION     DATGBK010001320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224363"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..391
                     /locus_tag="VKJ77_18455"
     CDS             <1..391
                     /locus_tag="VKJ77_18455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1571 domain-containing protein"
                     /protein_id="HMC47306.1"
                     /translation="ALWTSLNGSLARSQSRHSVRELVTEYITQQFLAEGKKFAEAGVT
                     RANDIEVKTIDGARVVAFTYETPSGQPEFYAKKEILGLDLRRPYFRSAESFDNDGKIF
                     ESIVFQNIAPKTFDGATFNPKNPAYNF"
     gene            588..827
                     /locus_tag="VKJ77_18460"
     CDS             588..827
                     /locus_tag="VKJ77_18460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004551316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47307.1"
                     /translation="MNLRNASAPVRAIKRLLSHHEIATLLLLLHAPIDAMAAPPDVAS
                     LSEYGYVEMVSPMPGEAKFRLTDDGNAVLRGLGIK"
     gene            940..1743
                     /gene="surE"
                     /locus_tag="VKJ77_18465"
     CDS             940..1743
                     /gene="surE"
                     /locus_tag="VKJ77_18465"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HMC47308.1"
                     /translation="MPAAIPASTPGPRPRLARVLLTNDDGIDAPGLAVLEAVAAELAD
                     EVWIVAPEHDQSGTSHSISLHSPLRVSEHGKRRFGVLGTPGDCVVMAVRHLMQDAPPT
                     LILSGINRGGNLGVETMFSGTVGAAMTGLLLGLPSIALSQTFSDRDNVRWDTARELAP
                     GVIRSLVAIEHDAPTCFNVNFPDIDAALAGPLTPTRQGVGLVEGIDVLPQTDPRGLQY
                     HWLRFQRGPRENTADSETAVVASGRVSVTPLQFERTDERTFAALTKALA"
     gene            complement(1804..3195)
                     /locus_tag="VKJ77_18470"
     CDS             complement(1804..3195)
                     /locus_tag="VKJ77_18470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC47309.1"
                     /translation="MRPATKIDDLDIYVWEGKADIVEQVVRCMSSFEVDVIRADGMSI
                     AAGQDAQRQAIAIVSVSVIDTGAFALRDWEAHRGMPVIWVGAAPRERDTSVFPTDYSH
                     ILPLDFTGAELRRMVAKLAQQLRAHGEQAQESSALIANAECMQALLHEVQTFADCDTS
                     VLVHGETGVGKERIAQMLHEQHKRFSEGPFVPVNCGAIPDGLFESLFFGHAKGSFTGA
                     VIAHKGYFEQADGGTLFLDEIGDMPLYQQVKLLRVLEDSAVTRIGSAAPVKVDFRLVA
                     ATHKSLPQLVKDGEFRADLYYRLAVIELKIPSLEERGAIDKIALFKSFIAQVVGQEKL
                     ATLPELPYWLADAVADSYFPGNVRELRNLAERIGVTVRQVGSWDTARLQRLLALARTS
                     QPVPPELSAEVIVDRSKWDMNERNRVLAALEANGWRRQDTASHLGISRKVLWEKMRKF
                     QIFDEEPETRVVG"
     gene            complement(3309..>3621)
                     /locus_tag="VKJ77_18475"
     CDS             complement(3309..>3621)
                     /locus_tag="VKJ77_18475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47310.1"
                     /translation="GNADDYQTTNSNQVGGVLYNATSGFASQLSAGNGLTLNVLGVSL
                     PVSSPVGQALLSFVLPLLTPIFNALDTVLMPVLQLLGAQIGVSTVHDLSLTCGQSQLQ
                     Y"
BASE COUNT          737 a         1164 c         1013 g          707 t
ORIGIN      
        1 tgcgctctgg acttcactca acggctcgct cgcacgctcg caatcgcggc attctgtccg
       61 cgagctcgtt accgaataca tcacgcagca gttcctggcg gaaggcaaga aattcgccga
      121 agctggagtc acgcgcgcca acgacatcga agtaaaaacg attgatggtg cccgcgtggt
      181 tgccttcact tacgaaaccc cttctggaca gcccgagttc tatgcaaaga aagaaatact
      241 gggactggac ctgaggcggc cgtatttccg gagcgcagaa tccttcgaca acgacggcaa
      301 gatttttgaa agtatcgtgt tccagaacat cgcaccgaag acattcgacg gcgcaacgtt
      361 caacccgaag aaccccgctt acaattttta atttcatcaa tcacaatttt tagcctcgcc
      421 aatcgtctcc atagcagacg cacgcgtggc atttggtctg ttttaagttt cgcctaagag
      481 ttgaccgata cccttgccca actttatcga aacttcacgc gccgctgtag ggtgcaatcg
      541 acgcgctgca cgacacaaag acaaagcatt aacgaaagga gttcgtcatg aacctccgca
      601 acgcatcggc tcctgtgcgg gccatcaaac gattactcag ccaccacgaa atcgccacgc
      661 tgctgttgct gctgcatgcg ccgatcgacg cgatggccgc gccccccgac gttgcctcgc
      721 tgagcgaata cggctacgtg gagatggtgt cgcccatgcc gggcgaggcc aagttccgcc
      781 tgaccgacga cggcaacgca gtgctgcgcg ggctcggtat caagtagatc cggccaggac
      841 gctattcacg cgcgcaccag ttcacgcggc taccccgcat cgcgatctct ggaataatcg
      901 attgagtgac gctttccctc aatcgaaagg agatttgcaa tgccagctgc aataccggct
      961 tcaacgcctg gtccccggcc cagacttgca cgcgttctgc tgaccaacga cgatggtatc
     1021 gacgcacccg gccttgccgt gctcgaagcg gtggccgccg aacttgcgga cgaagtgtgg
     1081 atcgtcgccc cggagcacga tcaaagcggt acgtcgcact ccatcagtct gcattcgccg
     1141 ctgcgcgtaa gcgagcatgg caagcgccgc ttcggcgtac tcggcacccc gggtgattgc
     1201 gtggtgatgg ccgtgcggca tctgatgcag gacgcgccac ccacgctgat actgtcgggc
     1261 atcaaccgcg gcggcaacct gggcgtggaa accatgttct ccggcacggt cggcgcagcc
     1321 atgacgggct tgctgctcgg cttgccatcc attgcattga gccagacctt cagcgaccgc
     1381 gacaacgtgc gctgggatac cgcgcgcgaa ctcgcgcccg gtgtgatccg ctcactggtc
     1441 gccatcgagc acgatgcgcc gacctgcttc aacgtgaatt ttccggatat agacgccgcg
     1501 ttggccggcc cgctcacccc gactcgccag ggcgtggggc tggttgaagg tatcgacgtc
     1561 ttgccgcaaa ccgatccgcg tggcctgcaa tatcactggc tgcgtttcca gcgcggtccg
     1621 cgcgaaaaca cggccgacag tgagacggca gtggtcgcat cgggacgcgt gtcggtgacg
     1681 ccgctgcaat tcgagcgcac cgacgaacgc acgttcgctg cgttgacgaa ggcgctagcg
     1741 tagaaatcga accaagcgga cagcggcgag agcgttggag tcgacaccac cgcctgcaac
     1801 gtctcaaccc acgacgcgcg tttcaggttc ttcatcgaag atctggaact tgcgcatttt
     1861 ttcccacagc accttacggc tgatgcccag gtgactcgcc gtgtcctgac gccgccagcc
     1921 gttcgcctcg agcgcggcca gcacgcggtt gcgttcgttc atgtcccact tgctgcgatc
     1981 aacgatcact tcagcgctca gctcaggcgg caccggctgc gaggtgcgtg caagcgcgag
     2041 caggcgctgc agccgcgcgg tgtcccacga tcccacttgt cgcacggtca cgcctatgcg
     2101 ctccgccaga ttgcgcagct cgcggacgtt gccggggaaa taactatcgg cgacagcatc
     2161 ggccagccag tacggcagct cgggcaaggt cgcgagcttt tcctgcccca ccacctgcgc
     2221 gatgaacgac ttgaacaatg caatcttgtc gatcgccccg cgctcctcca gcgacggtat
     2281 ctttaactcg atcaccgcca gccgatagta aagatccgcg cggaattccc cgtccttcac
     2341 cagttgcggc aggctcttgt gcgtcgccgc gaccagccgg aaatccacct tgaccggtgc
     2401 ggccgaacca atccgcgtga ccgcactgtc ctccagcacg cgcaataact tgacctgctg
     2461 atacagcggc atatcgccga tttcatcgag gaacagcgtg ccgccgtcgg cttgctcgaa
     2521 gtaccctttg tgcgcgatca cggcgccggt gaacgagcct ttcgcgtgac caaagaacag
     2581 tgattcgaac aagccatcgg gaatcgcgcc gcaattgacc ggcacgaacg gtccctcgga
     2641 aaaacgcttg tgctgttcat gcagcatctg cgcaatgcgt tccttgccca caccggtttc
     2701 gccatgcacg agcacactgg tgtcgcaatc agcgaaggtc tgtacttcgt gcagcaatgc
     2761 ctgcatgcac tccgcgttcg caatcagcgc gctcgattcc tgcgcttgct ccccatgcgc
     2821 gcgcagttgc tgggcaagct tcgccaccat ccgacgcaac tcggcgccgg tgaaatcgag
     2881 cggcaggatg tgcgagtagt ccgtggggaa aacgctcgtg tcgcgctcac gcggcgccgc
     2941 gcccacccag ataaccggca tgccgcgatg cgcttcccaa tcgcgcaatg cgaaggcgcc
     3001 cgtgtcgatc acgctcacgc tcacgatcgc gattgcctgg cgctgggcgt cctggcccgc
     3061 ggcaatcgac atgccgtcgg cgcggatcac atcgacttcg aaactcgaca tgcagcgcac
     3121 cacctgctcg acgatatccg ccttgccttc ccacacgtaa atatcgaggt catcgatttt
     3181 tgtcgctggt ctcattgctc gagtctcatg gcttgcatct gttggcttcg cagcccgttg
     3241 cgtgtgttca ttggttgcgt tcgttacatt attaacggca ccggttgatc tccggttcag
     3301 tcatgcgttc aatattgaag ctgcgactga ccgcatgtca gcgacaggtc atgcacggtg
     3361 ctcacgccga tctgagcgcc gaggagttgc agcacgggca taaggaccgt atccagcgca
     3421 ttaaatatgg gcgtcaggag aggcaagacg aaactcagaa gcgcctgacc aacgggcgag
     3481 ctaacgggaa gcgatacccc aagtacattc aaggtcaatc cgttccccgc ggacagctgc
     3541 gaagcgaaac ccgacgtcgc gttgtatagc acgccaccca cctggttcga gttcgtcgtt
     3601 tggtaatcat cagcattgcc a
//
LOCUS       DATGBK010001321         2543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_201254, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001321 DATGBK010000000
VERSION     DATGBK010001321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201254"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            266..1390
                     /gene="ugpC"
                     /locus_tag="VKJ77_18480"
     CDS             266..1390
                     /gene="ugpC"
                     /locus_tag="VKJ77_18480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HMC47311.1"
                     /translation="MSAVQLHQIRKAFAGTEVLKSVDIAVTDREFMVFVGPSGCGKST
                     LLRTIAGLERSDSGQVLIGGEDVTDLEPSQRGVAMVFQSYALYPHMSVYENIAFGLRM
                     IKLPEAQIKERVQRAAQILQIEQLLERKPRALSGGQRQRVAIGRSIVREPKVFLFDEP
                     LSNLDAALRVQMRLELIKLHKQLNATMIYVTHDQTEAMTMADRIVVLNQGKVEQIGTP
                     LELYRTPVNHFVAGFIGSPKMNFLPITVQRADAAGVTIGLPGGAPITLPFSADGVKTG
                     DKLTFGIRPEHLSESPASGMQGKLTGKVAVVEHLGGETLLHVNLDNDTTIQVKGSGES
                     TTVDGQSIEAGFGVRHAHLFRENGEALKHLQTVEASATAA"
     gene            1749..>2543
                     /locus_tag="VKJ77_18485"
     CDS             1749..>2543
                     /locus_tag="VKJ77_18485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007749287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47312.1"
                     /translation="MHKSLRRFVLSMTGALALCASIPSHAQSGDLLARVKANKEITVG
                     TEARYAPFESVENGKIVGYDADLLQYVLKSLPDVKLKQLDLPFQGLLPGLDAKRFDMV
                     ITAVTVNKDRASHFAFTLPIADATAGVLVRSNEASIKSPTDLNGKIVGSQTGSAQLQA
                     LMTLDNNLKAAGGPGIKQIKQYVAFDEAYADLAVGRLDAVAQSVANLGPLLKSRPGVF
                     AVLPQSIGPKSYFAWVARKDADSATLLKLFSDAIARANHDGTMKALQ"
BASE COUNT          543 a          736 c          743 g          521 t
ORIGIN      
        1 aagcaacgcc tcacggccga cgctcatcac ctttcatgac gatcctgcaa ttcgctgcct
       61 ggtttccatc aactccgctt tcgcgttctg ctccgggttc cgtttcactt gtaatttcag
      121 ttttacaatt gtatatttgg acgcgaacag gttgtcaaga taaattagct aaggcgttgc
      181 atgctgcgcc gcaaggcaaa agcgcgcgcc aacgcccgtt ccattgctcg ccggcccacg
      241 gcacgagcat ctgaaggaga cacgcatgag tgcagtgcaa ttgcatcaga tccgcaaggc
      301 gtttgccggt acggaggtgt tgaagagcgt ggacatcgcc gtgaccgatc gcgaattcat
      361 ggtgtttgtc ggcccttctg gctgcggaaa gtccacgctg ctgcgcacca ttgccggcct
      421 ggaacgcagc gactcgggac aagtacttat cggcggtgaa gacgtcaccg acctggaacc
      481 gtcgcaacgc ggcgtagcca tggtgttcca gtcgtacgcg ctatatccgc acatgtcggt
      541 ctacgagaac attgctttcg gactacggat gatcaagctg cctgaagcgc agatcaagga
      601 acgcgtgcaa cgcgcggcac agatcctgca gatcgaacag ttgcttgagc gcaagcctcg
      661 cgcgttgtcc ggcggccagc gtcagcgggt ggcaatcggg cgctcgatcg tgcgtgaacc
      721 aaaggtgttt ctctttgacg aacctctgtc caatctcgac gcagcgttgc gcgtacaaat
      781 gcggctcgag ctcatcaagc tgcacaagca actcaacgca acgatgattt atgtcacgca
      841 cgaccagacc gaagccatga ccatggcgga tcgcattgtc gtgttgaatc aaggcaaagt
      901 cgaacagatc ggcacgccgt tggagcttta cagaacgccg gtgaatcact ttgtggcggg
      961 gttcatcggc tcgccgaaga tgaattttct gccgatcacg gtgcagcgcg cggacgcggc
     1021 gggtgtgacc attggcttgc ctggtggcgc gcccatcaca ctgccgttca gcgcagatgg
     1081 cgtgaaaacc ggcgacaagc tgacctttgg cattcgcccc gagcatctct cggaatcacc
     1141 ggcaagcggt atgcaaggga aactgacggg gaaggtcgcg gttgtcgagc atctcggcgg
     1201 cgagacgctg ctgcatgtga atctggacaa cgacacaaca atccaggtga aaggatcagg
     1261 cgaatcgact acggtcgacg ggcaatccat cgaagccggt ttcggcgtgc ggcatgcgca
     1321 tttgtttcgc gaaaatgggg aagcgctgaa gcatttgcag actgtggaag cgagcgccac
     1381 tgcagcttga gtcgcgttga gttgggcggg gcctgaggcc tcgtcactcc cttatgtttc
     1441 gataaacccg gggcggccag tctcggtgcg cgcgaattag cgcgcttcaa acagtgatcg
     1501 gcgagacctc gccgtaccgc tccccctctc gttcaaattc acggccgcgc tgccgttgtc
     1561 ttgtgcataa cggcacttta tcggtgcctg aacgcgttca aatcccactc cggtgcacgc
     1621 cggccagacc aaaacatctc gccacaagcc cttttcatgt ggcacacttc atgcatagtg
     1681 aattttattc aagttacttg aataaaattc actaacccct ctttgcggcg tggccgcacg
     1741 ggagcatcat gcataagtca cttcgtaggt ttgtcttgtc gatgaccggc gcgcttgcgc
     1801 tgtgcgcgtc gatcccgagt cacgcgcaaa gcggcgacct gcttgcacgc gtgaaagcga
     1861 acaaggaaat cacggtggga acggaggcgc gttatgcgcc gttcgaatcc gttgagaacg
     1921 gcaagatcgt gggctatgac gctgacctgc tgcaatacgt gctgaagtcg ctacccgatg
     1981 tcaagctcaa gcaactcgat ctgccgttcc agggcttgct gccgggcctt gacgcaaaac
     2041 gcttcgacat ggtgatcacc gctgtcaccg tcaacaagga tcgtgcgagc cacttcgcgt
     2101 tcacgctgcc catcgccgat gcaaccgcgg gcgtcctggt gcgttcgaac gaagcgtcca
     2161 tcaagtcgcc cactgacctg aacgggaaga tcgttggatc gcaaacaggc tcggcgcagt
     2221 tgcaagcgct gatgacgctc gacaacaacc tgaaagccgc tggcggcccg ggtatcaagc
     2281 agatcaagca atacgtcgca ttcgatgagg cttatgcgga cctcgcggtc ggccgcctgg
     2341 acgcggtcgc gcaatcggtc gcgaatctcg ggccgttgct gaaatcgcgt ccgggtgtgt
     2401 tcgccgtatt gccgcaaagc attggaccga agagctattt cgcgtgggtc gcacgcaagg
     2461 acgcggacag cgcaacgctg ctcaagctct ttagcgacgc cattgcccgc gcgaatcatg
     2521 acggcacgat gaaggcactg cag
//
LOCUS       DATGBK010001322         2275 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_177509, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001322 DATGBK010000000
VERSION     DATGBK010001322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177509"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1052
                     /locus_tag="VKJ77_18490"
     CDS             <1..1052
                     /locus_tag="VKJ77_18490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007000183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HMC47313.1"
                     /translation="DDGSPRVELLSPPADLEGEWTRRDFALPAASQSYVDSIDSERDD
                     TVLVHVEHFLTPPSLYYADFAQPDSEWQLLARLPAQFDASGLIAERRHAISTDGVAIP
                     YWLIGREANVKGHQSAPCLLYGYGGFEVALDPHYDATTGIAWLESGGLYAVANIRGGG
                     EFGPEWHQAAQREKRQVAFDDFIAVAQALVASGVTTSKQLAIRGGSNGGLLTGVMLVQ
                     RPELFGAVLSEVPLLDMARFHLLLQGASWIDEYGDPEEEDDLRFLLTYSPYQNVKADA
                     VYPPALFTSSATDDRVHPGHARKMAARMQKLGHERVWYLENRDGGHGAGVEAESIARV
                     EATAFTFLQQMVGGK"
     gene            complement(1145..>2275)
                     /locus_tag="VKJ77_18495"
     CDS             complement(1145..>2275)
                     /locus_tag="VKJ77_18495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010105737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HMC47314.1"
                     /translation="LPSLPALAASFGVTAAAAQITLTSFMLGFSLGMLMYGPLSDAYG
                     RRPVLLGGIVLYTLASVGCALSFSIHSLVLLRFLQALGAGSASVLARAIARDAHAPSD
                     AARVLSMLAIVTSIGPLLAPLIGGQLLLLGGWRAVFVTLTVFGTACAVTTYLRVPETW
                     PREKRATSALGRSFAAYGRLLTDPVTWGHTLCGGMAFASMFAYITATPFVYIDYFHVK
                     PQHYGFFFGLNIIGIIGWNVVNTRLVGSLGSLKLISIASFVSVIAALATAFVCITGFG
                     GLWSIVGCLFFVVGVVGLLSANCTTDLMHRYPHNAGAAAAVFGAVQLALGALASVAVG
                     MFHDGTPQGMGIVIGVTGVLTFVGRTLVLRWHGTPVRPARAG"
BASE COUNT          461 a          734 c          725 g          355 t
ORIGIN      
        1 tggacgatgg ttcgccgcgc gtggagttgc ttagtccccc ggccgatctc gaaggcgaat
       61 ggacccgccg agatttcgcg ctgccggccg ccagtcaatc gtacgtggat tccatcgaca
      121 gcgaacgcga cgacaccgtg ctcgttcacg tcgaacattt cctcacgccg ccgtcgctgt
      181 actacgccga tttcgcgcag ccggacagcg aatggcaact cctcgcacgc cttcccgctc
      241 agttcgatgc gagtggtctc attgctgagc gtcggcacgc gatatcaacc gatggcgtgg
      301 ccattcccta ctggctgatc ggtcgcgaag cgaacgtcaa gggtcatcaa tcagcgccct
      361 gcctgctcta cggctatggc ggcttcgaag tcgcgctcga tccgcattac gacgcgacca
      421 cgggcatcgc gtggctcgaa agcggtgggt tatacgcagt cgcgaacatt cgtggcggcg
      481 gcgagttcgg gccggagtgg catcaggcgg cgcagcgtga aaagcgccag gtcgccttcg
      541 atgacttcat cgcagttgcc caagcgctgg tggcatcggg cgtgacgaca tcgaaacaac
      601 tcgccattcg gggcggcagt aatggcggat tgctgaccgg cgtcatgctg gtccagcgtc
      661 cggaattgtt cggcgcggtg ttgtccgaag tgccattgct cgacatggcg cgttttcatt
      721 tgctgctgca aggcgcatct tggatcgatg aatacggtga ccccgaggag gaagacgacc
      781 tgcgtttcct gctgacctat tcgccgtatc aaaacgtgaa ggccgatgcg gtttatccgc
      841 cggcgctatt cacgtcgtcg gcgaccgatg accgtgtgca tcccggccac gcccgcaaga
      901 tggcggcacg gatgcagaag ctggggcatg agcgggtgtg gtatctggag aaccgcgacg
      961 gcggtcacgg ggcgggcgtg gaggcggaaa gcatcgcccg ggtggaagcg accgcgttca
     1021 cgttcttgca gcagatggtg ggcggcaagt gacgttgtgc cgagcgcgcg gctgacatgg
     1081 caacgcgctc ggtttctcgc tggcggcccg tgttcagact agcgctcgat agcgcgccga
     1141 acaatcatcc tgcgcgagcg ggccgcaccg gcgtgccgtg ccagcgcagc accagcgttc
     1201 ggccgacaaa cgtcagcacg cccgtcaccc cgatcacgat ccccatcccc tgcggcgtgc
     1261 cgtcgtggaa catcccgacc gccacgctcg ccagcgcgcc gagcgccaac tgcaccgcgc
     1321 cgaacactgc ggcggcggcg ccggcattgt gcgggtatcg atgcatcaaa tcggtcgtgc
     1381 agttggccga taacaaaccc acgaccccga ccacgaagaa caggcagccg acgatcgacc
     1441 acaagccgcc aaacccggtg atacacacga acgccgtcgc cagcgccgcg atcacgctga
     1501 caaacgacgc gatcgaaatc agtttcagcg atcccagcga cccgaccagc cgcgtgttca
     1561 ccacgttcca gccgatgatt ccgataatgt tcagaccgaa gaaaaacccg tagtgctgcg
     1621 gcttcacatg aaagtagtcg atatacacaa acggcgtcgc ggtgatgtac gcgaacatcg
     1681 aggcgaacgc catgccgccg catagcgtgt ggccccacgt gacgggatcg gtgagaagac
     1741 gaccgtaggc ggcgaacgag cgcccgagcg ctgaagtcgc acgtttctcg cgcggccagg
     1801 tttccggcac ccgcaaatac gtggtcaccg cgcatgccgt accaaacacc gtgagcgtga
     1861 cgaacaccgc gcgccagcct cccagcaaca gcaactggcc gcctatcagc ggtgcaagca
     1921 acggcccgat cgacgtgacg atggcaagca tcgacagcac gcgagccgcg tccgatggtg
     1981 cgtgggcatc gcgtgcaatc gcccgcgcca gcaccgacgc cgagcccgcg ccgagcgcct
     2041 gcaggaagcg caggagaacc agcgaatgga tggaaaacga cagcgcgcat cccacgctgg
     2101 caagcgtgta caacacgatg ccgccgagca gcaccggccg gcggccgtaa gcatcggaga
     2161 gcgggccgta catgagcatg ccgagcgaaa agcccagcat gaaactggtc agcgtaatct
     2221 gcgcggcggc ggcggtcaca ccgaatgagg cggcgagcgc cggcaggctc ggcag
//
LOCUS       DATGBK010001323         2223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_270856, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001323 DATGBK010000000
VERSION     DATGBK010001323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270856"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..627
                     /locus_tag="VKJ77_18500"
     CDS             <1..627
                     /locus_tag="VKJ77_18500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009895478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase C-terminal domain-containing
                     protein"
                     /protein_id="HMC47315.1"
                     /translation="RHGVDMQLDTTPLAINKTPTGAMVKTDRGEVTADVVVIGIGVVP
                     NAELAASAGLLVDNGIVVDQHCRTADPLIFAAGEVTSHFNALLGRHMRVESWQVAENQ
                     PAVAAANMLGGEEHYAEMPWLWSDQYDCNLQTLGVFAAHQSVFKRGNPEGDAFCMLAL
                     GADDRLEAVVTVNGGRDMAVCRRLMAAGKVLDHARLADPDTPLKALLK"
     gene            805..2049
                     /locus_tag="VKJ77_18505"
     CDS             805..2049
                     /locus_tag="VKJ77_18505"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC47316.1"
                     /translation="MKFDTVVLGAGIVGVSIAIHLQKRGRSVALVDRKHPGLETSFGN
                     AGLLQREGVYPYALPRDIGTLMHYACNSSIDVHYHREALPALAPFLWAYWRNSEPVRH
                     AAIARQYATLIEHCVTEHEILAQEAGVESLLRPTGWIKVFHSAASQDDELRDAERWHR
                     EFGVQYKLLDPAKLQLAEPHLDRSLVGGLHYTDAVSVTDPGALVAGYAAYFERLGGRF
                     LTGDATSLEAEGDGWRVMTQDGPVSASSAVIALGPWAKDVTSALGYKLPLAVKRGYHM
                     HYAPQPGTVLNHPVLDVDNGFLLAPMARGIRLTTGVELADRDAPKTPAQLTRAEPFAR
                     TLFPLGERVDDEPWMGRRPCTPDMMPIIGPAPRHKTMWFAFGHAHHGLTLGAVTGRLI
                     ASMMTGEEPFVDVTPFRADRFD"
BASE COUNT          417 a          637 c          729 g          440 t
ORIGIN      
        1 cgtcatggcg tggatatgca gctcgacacc acgccgctag ccattaacaa gacgcccact
       61 ggggcgatgg tcaaaaccga tcgcggagag gtgacggcgg acgtggtggt gatcggcata
      121 ggcgttgtgc ctaacgcgga gctggctgca tcggcgggat tgctggtcga taacggcata
      181 gtggtggatc aacactgccg caccgccgac ccgcttatct tcgcagcagg cgaggtgacg
      241 agtcacttca acgcactgct gggacgacat atgcgcgtgg agtcgtggca agtggcggag
      301 aaccagcctg ccgtggcagc cgcgaacatg cttggcggtg aggagcatta cgccgagatg
      361 ccgtggctat ggtctgatca atatgactgc aatttgcaga cactgggcgt ttttgctgcg
      421 catcaatcgg tctttaaacg aggtaacccg gagggcgatg cgttctgcat gcttgcgctt
      481 ggcgcggacg acagactcga ggcggtagtg acggtgaatg gcggtcggga catggccgtg
      541 tgccgccggt tgatggctgc aggaaaagtg cttgaccacg cccgtctcgc cgatccggat
      601 acgccgctta aggccctgct caaataaagc tggctttgac tgggtgcggt ggctaagccg
      661 atacgaaagc taattcggaa agcctgggga gcgcacgcgt atgatctacg tctggaagtt
      721 tctggggcgg tgaagggtga gcggtgaacc gcgctcactc ttcaccgccg cgaacaaact
      781 ggacgtagag gagagattca acgcatgaag ttcgacacag tcgtgctggg cgccggcatc
      841 gtgggtgtat cgatcgccat tcatttgcaa aagcgtggcc gctcggtcgc gctggtggac
      901 cgcaagcatc ccggactcga aacctcgttc ggcaacgcgg ggttgctgca gcgcgagggt
      961 gtctatcctt acgcgctgcc ccgcgatatc ggcacgctga tgcactacgc ctgcaattcg
     1021 tccatcgatg ttcattacca tcgggaagca ttgcccgcgc tcgcgccatt cctctgggcg
     1081 tactggcgca attccgaacc cgtgcgccat gccgccatcg cgcgccagta cgccaccctg
     1141 atcgaacatt gcgttaccga gcacgagatc ctcgcgcagg aagccggcgt ggagtcgttg
     1201 ctgcggccaa cggggtggat caaggtattc cacagtgccg cctctcagga tgacgagttg
     1261 cgcgacgccg agcggtggca tcgcgagttt ggcgtgcaat acaagctcct cgatccggcg
     1321 aagttgcagt tggcggaacc gcatctcgac cgctcgctag tgggcggctt gcattacacg
     1381 gatgcagtgt cggtcacgga tcctggcgcg ttggtcgcgg gttatgcggc gtatttcgag
     1441 cgtttgggcg gccgcttcct gacgggtgat gcaacctcgc tggaagccga gggcgacggc
     1501 tggcgcgtga tgacgcaaga cggtccggtc agtgcgtcgt cggctgtgat cgcgttgggg
     1561 ccgtgggcta aagacgtgac gtccgcgctg ggctacaagc tgccgcttgc ggtcaagcgt
     1621 ggttaccaca tgcattacgc gccgcaaccc gggacggtgc tcaatcaccc cgtcctggac
     1681 gtggataacg gtttcctgct cgcgccaatg gcacgtggca ttcggctgac aacgggtgtt
     1741 gaattggcgg atcgtgatgc gccgaagaca cctgcgcaac tgacgcgtgc cgagccgttc
     1801 gcgcgtacgc tgttcccgct cggcgagcgg gtagacgatg aaccgtggat gggccgccgt
     1861 ccgtgtacgc ctgacatgat gccgatcatt ggccccgcac cgcgtcacaa gaccatgtgg
     1921 tttgcgttcg gacacgcgca tcatggtttg acactcggcg cggtgaccgg gcggctgatc
     1981 gcgtccatga tgacggggga agaaccgttc gttgatgtca cgccgttcag ggctgaccgc
     2041 ttcgactagg tttgaaggtg gtcgcgttta gccgaacccg caagcgatcg gtcacttggc
     2101 aagcggggcc tgctctgaaa atttatcgat agccccgtag aatcggtcaa acgtcaaaca
     2161 tgccacgctc gtttcggccc cgagccgaac gccgaatcct gacccctatc ctgccaacgc
     2221 caa
//
LOCUS       DATGBK010001324         2314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_247133, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001324 DATGBK010000000
VERSION     DATGBK010001324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247133"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..825)
                     /gene="lolA"
                     /locus_tag="VKJ77_18510"
     CDS             complement(160..825)
                     /gene="lolA"
                     /locus_tag="VKJ77_18510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HMC47317.1"
                     /translation="MKYQSRTIKAVVFGASMLLASQAFASGTEQLKAFIAQVHSAHGS
                     FVQREVKAPSKAAASATQGMAARLGGTSSGTFTFARPGKFIWAYDKPYAQILQADGDK
                     LYVYDKDLNQVTIRPLGNALGASPAAILFGSNDLDKNFTSRDAGVKDGIDWLELTPKA
                     QDTQFQQVGIGFKDGNLEAMELHDVFGNVTLLTFSNIEKNPPLKADQFKFIVPKGADV
                     ING"
     gene            complement(883..>2314)
                     /locus_tag="VKJ77_18515"
     CDS             complement(883..>2314)
                     /locus_tag="VKJ77_18515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HMC47318.1"
                     /translation="ADTLEYTSRLIEKKLKDFGVEVSVVAAYPGPVVTRYEIEPATGV
                     KGSQIVGLAKDLARSLSLVSIRVVETIPGKNFMALELPNQRRQTVRLSEILGSQVYAD
                     AASPLTMGLGKDIGGKPICADLAKMPHLLVAGTTGSGKSVGINAMILSLLYKATADEV
                     RMILIDPKMLEMSVYEGIPHLLCPVVTDMRQAGNALNWAVAEMERRYKLMSKMGVRNL
                     AGFNNKIDEATKRDEKIPNPFSLTPDEPEPLNRLPTIVVVIDELADLMMVVGKKVEEL
                     IARIAQKARAAGIHLILATQRPSVDVITGLIKANVPTRMAFQVSSKIDSRTILDQQGA
                     ESLLGMGDMLYLPPGSGLPVRVHGAFVSDEEVHRVVAKLKEQGEPNYIEGVLEGGVLG
                     DGEDGAPGGAGAGGGEGEADPLYDQAVEIVIKNRRASISLVQRHLRIGYNRAARLLEQ
                     MENSGLVSSMSSNGNREILTPAREAE"
BASE COUNT          443 a          750 c          625 g          496 t
ORIGIN      
        1 ttcaggcgag aggaccgtca gatcccctcg cctgcctgct aagccttact gctaagcctt
       61 actgctaagc cttactgcta agccttactg ctaagcctta ctgctaagcc cgactgccaa
      121 gtctgattga gcagcctgta ctgagcagcc tctgctgggt cagccgttga tcacgtccgc
      181 gcccttcggc acgatgaact tgaactgatc ggctttgagc ggcggattct tctcgatatt
      241 cgagaacgtc agcaacgtga cattgccgaa cacgtcatgc aattccattg cttcgagatt
      301 gccgtccttg aagccgatac ccacctgctg gaattgcgta tcctgcgctt tcggcgtcag
      361 ttccagccag tcgatgccat ccttcacgcc cgcgtcgcgc gacgtgaaat tcttgtcaag
      421 gtcgttgctg ccaaagagga tcgcagccgg actcgcgccc agcgcgttgc ctaacggccg
      481 gatagtgacc tggttcaagt ctttgtcgta cacatagagc ttgtcgccgt cagcctgcag
      541 gatttgcgca tacggtttgt cgtacgccca gatgaacttg cccggccgcg cgaatgtaaa
      601 cgtgccgctc gacgtgcccc caagccgcgc cgccatgccc tgcgtagccg atgccgccgc
      661 tttgctcggc gccttcactt cacgctggac gaagctgcca tgcgccgagt gaacctgcgc
      721 aataaacgcc ttcaattgct cggtaccgct tgcgaaagcc tgcgacgcca gcagcatgga
      781 agcgccgaaa acgacggctt ttatcgtccg gctttgatat ttcatagccg atctcaaagc
      841 cgatctcaaa actgactgca tataaaaact ctccagataa ccttattcgg cttcacgcgc
      901 cggcgtgagg atttcgcgat tgccgttcga ggacatcgac gaaacgagcc ccgaattttc
      961 catttgttcg agcagccgtg ctgcgcggtt ataaccgatc cgcagatgcc gctgcacaag
     1021 cgagatcgat gcgcggcggt tcttgatcac gatttcgacg gcctgatcgt agagcggatc
     1081 ggcttcgcct tctccgccgc ccgcgcctgc accgcctggc gctccgtcct cgccatcgcc
     1141 cagcacaccg ccttcaagaa cgccttcaat gtagttcggc tcgccctgct ccttgagctt
     1201 cgcgaccacg cgatgcactt cttcatccga tacaaacgcg ccgtggacac gcacgggcaa
     1261 ccctgagccc ggcggcagat agagcatgtc gcccatgccg agcaaggatt ccgcgccctg
     1321 ttgatcgagg atggtccgcg aatcgatctt cgacgacacc tggaacgcca tccgcgtggg
     1381 cacattggcc ttgatcaacc cggtgatcac gtccaccgac ggccgctgtg tggcgagaat
     1441 caggtgaatg ccggccgcgc gcgctttctg cgcgatccga gcgatcaact cttccacctt
     1501 cttgccgacc accatcatca ggtcggcgag ttcgtcgatc acgaccacga tagtcggcag
     1561 gcggttgagc ggttccggtt cgtccggcgt caggctgaac ggattaggaa ttttctcgtc
     1621 gcgcttggtg gcttcgtcga tcttgttgtt gaagcccgca agatttcgca cgcccatctt
     1681 gctcatcagc ttgtaccggc gttccatttc ggccaccgcc cagttgagcg cgttgccggc
     1741 ctgccgcatg tcggtgacga ccggacagag cagatgcgga atgccttcgt agacactcat
     1801 ttcgagcatc ttcgggtcga tgaggatcat gcgtacttcg tcggcggtgg ctttgtacaa
     1861 cagcgacaag atcatcgcgt tgatccccac cgacttgccc gaacccgtag tacccgccac
     1921 cagcaggtgg ggcatcttcg cgaggtcggc gcatatcggc ttcccgccaa tatccttgcc
     1981 cagccccatg gtcaggggcg aagcggcatc ggcataaacc tgcgaaccga ggatctcgga
     2041 cagacgcacg gtctggcggc gctgattcgg caattccagc gccatgaaat tcttgcccgg
     2101 aatggtctcg accacgcgaa tggagaccag cgacaacgag cgcgccagat ccttcgccag
     2161 ccccacgatc tgcgagccct tcactccagt tgccggctcg atttcgtagc gcgtcacgac
     2221 cggacccggg tacgcggcaa ccacggacac ttccacgccg aaatccttca gctttttctc
     2281 gatcagccgc gacgtgtatt cgagggtatc ggcg
//
LOCUS       DATGBK010001325         1662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_177552, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001325 DATGBK010000000
VERSION     DATGBK010001325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177552"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /gene="narJ"
                     /locus_tag="VKJ77_18520"
     CDS             <1..547
                     /gene="narJ"
                     /locus_tag="VKJ77_18520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006386094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051131 - chaperone-mediated protein
                     complex assembly [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HMC47319.1"
                     /translation="GALQPLLALLSEHPLIELQENYVATFDRNPAHSLHLFEHVHGES
                     RDRGQAMVDLLDEYRRLGLEMATNELPDHVPLFLEVLGNVDPAQARALLDEAIHVLAA
                     LGDRLARDESPYAGVFTVLRSMTDVVPLAAETPPIRDMDEALERFGPGADGVEPLLAP
                     SMPTPLAQPMHFHPRSPATAN"
     gene            566..1243
                     /gene="narI"
                     /locus_tag="VKJ77_18525"
     CDS             566..1243
                     /gene="narI"
                     /locus_tag="VKJ77_18525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011301119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009325 - nitrate reductase complex
                     [Evidence IEA];
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0019645 - anaerobic electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HMC47320.1"
                     /translation="MLNQFLFGIYPYIAAAVFLFGSLARFEREQYTWKAESSQLLHRG
                     NLRLGSILFHVGILGLFFGHLAGLLTPVAVWDWLGIEHGTKQAVAMIAGGVMGSMCLV
                     GLIILIHRRVSNARISAVTRTGDKVLLLWILLTLLLGLSTIRESADHMDGHMMVQLMT
                     WAQHVVTFRGDAAQYVAAAPLVFRMHLFMGMSLFVIFPFTRLVHVWSGFASVTYLSRA
                     WQLVRPR"
     gene            1266..>1662
                     /locus_tag="VKJ77_18530"
     CDS             1266..>1662
                     /locus_tag="VKJ77_18530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HMC47321.1"
                     /translation="MAIIVNGVELTDTDLEREMPAHADTPDSQQAAMTAAVLRRVLLD
                     EAAQLHITSSHGDEAMIEALLDHQLAEAAAPTHEECERHYLADLERWRVNERARVSHI
                     LFQVTESVDLAALRQRAQRTLDELLHADDL"
BASE COUNT          294 a          529 c          498 g          341 t
ORIGIN      
        1 aggcgcgttg cagccattgc tcgcgctgct cagcgagcat ccgttgatcg agttgcagga
       61 gaactacgtc gccacgttcg accgcaatcc tgcgcactcg ctgcatctgt tcgaacacgt
      121 tcacggcgag agccgcgatc gcgggcaggc aatggtggat ctgctggatg aatatcgccg
      181 gctgggtctg gagatggcga ccaatgaatt gcccgaccat gtgccgctgt ttcttgaggt
      241 gctgggtaac gtcgatccag cgcaagcgcg cgcgctgctt gatgaagcca tccacgtcct
      301 cgcggcgctg ggtgaccgtc ttgcacgcga cgagagtccg tatgcgggcg tattcaccgt
      361 gctccggtca atgacggatg tcgtgccgct agccgcggaa actccgccga tccgcgacat
      421 ggacgaagca ctcgagcgtt tcggccccgg cgccgacggc gtcgagccgc tgctcgcgcc
      481 ctccatgccc acgccgcttg cccagccgat gcacttccat ccgcgatcgc ctgctacggc
      541 caactgaatt ccagggacta cgttcatgct caatcaattt ctgttcggta tttatccgta
      601 cattgcggcg gccgttttcc tgttcggcag cctcgcgcgt ttcgaacgcg aacagtacac
      661 atggaaagcc gaaagttcgc agttgcttca tcgcggcaat ctgcggctcg gcagcatcct
      721 gtttcacgtc ggtattctcg ggctcttctt cgggcatctt gccggcctgc tcacgccggt
      781 tgccgtttgg gactggctcg ggatcgagca cggcacgaaa caagccgtgg cgatgatcgc
      841 aggcggcgtg atgggctcaa tgtgtctcgt cggtctcatc atcctgattc accggcgcgt
      901 cagcaacgcg cgtatttccg ctgtgacccg caccggcgac aaggtgctgc tgttgtggat
      961 tctcttgacc ctgctgctcg gcttgtcgac gatcagggaa tcagcggatc acatggatgg
     1021 ccacatgatg gtccagctca tgacctgggc gcagcacgtc gtcaccttcc gcggcgacgc
     1081 agcgcagtac gtggcggccg caccgcttgt gttccggatg catttgttca tgggcatgtc
     1141 gctgttcgtc atcttccctt tcacccggct cgtgcacgtc tggagcggct tcgcttcggt
     1201 cacgtacctg agccgcgcat ggcagctcgt gcggcctcgc taacccgatc agagaagaca
     1261 acatcatggc aatcattgtc aacggcgtgg aactcaccga caccgacctg gagcgcgaaa
     1321 tgccggctca tgcagacacc ccggattcac aacaggcagc aatgaccgcg gccgtcctgc
     1381 gccgcgtcct gctcgatgaa gctgcacagt tgcacatcac ctcctctcac ggcgacgagg
     1441 cgatgatcga agcgttgctc gatcatcagc tcgctgaagc cgccgcgccc acgcatgaag
     1501 agtgcgagcg ccactacctg gcagatcttg agcgctggcg agtgaacgag cgcgcgcggg
     1561 tgagccatat cctgttccag gtgacggaaa gcgtggatct ggcggcgctg cgtcaacgcg
     1621 ctcaacggac actcgatgaa ctgctgcacg ccgacgacct gg
//
LOCUS       DATGBK010001326         3242 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108413, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001326 DATGBK010000000
VERSION     DATGBK010001326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3242
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108413"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1598
                     /locus_tag="VKJ77_18535"
     CDS             <1..1598
                     /locus_tag="VKJ77_18535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47322.1"
                     /translation="RRAFLHTSLALMSAGAVGIVPDKASATAATTPVEGGTLTYAIPQ
                     EPPSLVSLLDTNTSIRNISAKITEGLLRYDAQFKPQPLLATSWSVSANGLEYTFKLRP
                     AVTWHDGREFTSADVRYSVLTQQKLGPRGRITLANVARVDTPDPLTVVLALTKPTPYL
                     IKALSSAELPIVPQHRYGDGDPLASPNLSAPIGTGPFIFDKWVRGSYVSLRKNPNYWR
                     KGAPYLDRIIYRIVPDQAAISAALETGEADAAGNVGLADLGRLATLPQLRIDDTYDAY
                     LNNASFLEFNVENPILAKPEVRKAIAQALDRNFIRDNIYYKRSTVVNSPVPAALSNYY
                     DDSTFHYSYDLNATNRLLDEAGYPRQSDGQRFAIRLTYIPGADFRRTADYLHAALSRV
                     GIKLSILDGDLPTFLRRAYITREFDLNINGLGRLYDPTVGVQRIYWSDGVQHPLIWIN
                     ASHYQNPKVHELFRQAAVETDEQKRGAAFREIQRIVGRDLPVLPLVTVPSLQVYNARV
                     HNLSNSIDLAAGDFSDTWIEART"
     gene            1609..1854
                     /locus_tag="VKJ77_18540"
     CDS             1609..1854
                     /locus_tag="VKJ77_18540"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HMC47323.1"
                     /translation="MSVSIMTAHLLDDPRPTVLDALTFASARDQAKATVKELFDVAGL
                     VTSSGNPAYADNRASLDSLAVAALREAGAVIIGKTNR"
     gene            1851..3062
                     /locus_tag="VKJ77_18545"
     CDS             1851..3062
                     /locus_tag="VKJ77_18545"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003058880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC47324.1"
                     /translation="MSTPPALDNRATQNEELISKAVELGRQFALIAAAHDRTGETPSA
                     QFDALNAAGLLKLTIAQSDGGYGAGLAVARTVVGAIAHGDPSVALILAMHYAQHAAIA
                     RSARSRDADWPAHLVRRLTDESVTGRSLINAAQVEPALGSPSHGGLPDTVARRVGNQW
                     HLCGHKIYVTGVPLLSWINVLARTDEDEPRLGHFLVPRDAVGVQIVETWDPIGMRASA
                     SHDAIFSDVAIPLADVVALKPAHLGLQRDAHGIAWYFSLLGAVYDGAARAARDWLIDF
                     LNQRRPSSLGGASLASLPTVQEIVGRIEILLATNDWLMRSHAEAFDAGTAPDSLAGML
                     KHVVIDNATQSVELAIELTGNHGLARRNPLERHHRNVLCGRIHAPSNALLRGTAARAA
                     LSAVQRDSVSN"
BASE COUNT          651 a         1047 c          908 g          636 t
ORIGIN      
        1 atcgaagagc gttcctgcac acctcactcg cattgatgtc ggccggggcc gtggggattg
       61 tgccagacaa ggccagcgcc accgcagcaa ccacgccggt ggaaggcggc acgctgactt
      121 acgctatacc gcaagaaccg ccatcgcttg tgtcgctgct cgacaccaat acctctattc
      181 ggaacatcag cgcgaagatc accgagggat tactgcgcta cgacgctcag ttcaagcctc
      241 agcctctact ggcgacttcc tggagcgtca gcgctaacgg acttgaatat acgttcaagc
      301 tacggcctgc cgtgacgtgg cacgacggtc gcgaatttac ttccgctgac gtgcgatatt
      361 cggtgcttac gcaacagaaa cttggaccgc gcggacgcat tacgctagcg aatgtagcgc
      421 gcgtcgatac gccggatccg ctcacggtcg tgctggcact caccaaaccc acgccctatc
      481 tgatcaaggc gctgtcatcg gcggaactgc cgattgtgcc gcagcatcgt tatggcgatg
      541 gcgatccgct cgccagtccg aacctgagcg cccccatcgg caccggtccg ttcatcttcg
      601 acaaatgggt gcgaggcagc tacgtgagcc tgcgcaaaaa tccgaactat tggcgcaagg
      661 gtgcacctta tctggaccgc atcatctacc ggatcgttcc cgaccaggcc gccatttccg
      721 ccgcgctcga gacgggtgag gcagatgccg ccggcaatgt cgggctggct gatctggggc
      781 gtcttgccac gctcccgcaa cttcgcatag acgataccta cgacgcctat ctgaacaatg
      841 cgtcgtttct ggaattcaat gtcgagaacc cgatcctggc caaacccgaa gtgcgtaagg
      901 cgattgccca agcgctcgat cgcaacttca tcagggacaa tatctattac aagcgctcaa
      961 ccgtcgtcaa ctcgccagtc ccggccgcgt tgtcaaacta ttacgacgac agcacatttc
     1021 attattccta cgacctgaac gcaacgaacc ggctgctcga cgaggcaggc tatccacgac
     1081 agtccgacgg ccagcgcttc gctatcaggc tgacctatat tcccggtgct gacttcaggc
     1141 gtacggcgga ctatcttcac gcagcgctgt cccgtgtggg tatcaagctt tctattctcg
     1201 atggcgacct gccgaccttc ctgcgccgcg cttacatcac ccgcgaattc gacctgaata
     1261 tcaacgggct gggacgtctc tatgacccga ccgtcggcgt gcagcgcatc tactggtccg
     1321 acggcgtcca gcatcccctg atctggatca atgcttcgca ctaccaaaac ccgaaagtgc
     1381 acgagctgtt ccggcaggcc gcagtcgaga ccgatgaaca gaaacgtggc gccgcgttcc
     1441 gggagatcca gcgtattgtc ggccgcgatc ttccggttct tccactcgtg accgtgcctt
     1501 cgttgcaggt ctataacgcc cgtgtccata acttgagcaa cagcatcgac ctggcagcag
     1561 gcgatttctc cgacacctgg atcgaagcca ggacctgaca cccgcacctt gagcgtatcg
     1621 atcatgaccg cacacttatt ggatgatccc aggccgactg ttctcgacgc cctgactttc
     1681 gcgagcgccc gtgatcaggc gaaagctacg gtcaaggaac tattcgatgt cgccggactc
     1741 gtcaccagca gcggcaaccc cgcgtatgca gacaaccgcg cctccctcga ttctctcgcc
     1801 gttgcggcgt tgcgtgaggc cggcgctgtc atcatcggta aaaccaatcg atgagcacgc
     1861 ctccagcgct cgacaatcgc gcaacccaaa atgaagaatt gatcagtaaa gctgtcgaat
     1921 tgggccggca gttcgcgctc attgctgcgg ctcatgaccg taccggcgag acacccagcg
     1981 cacaattcga cgcgctgaac gcagccgggt tgctgaagct cacgatcgcg cagtcggatg
     2041 gtggttatgg cgcaggcctc gccgtagcgc gcaccgtggt gggcgcgatt gcccacggcg
     2101 atccatcggt cgcgctgatc cttgcaatgc actacgcaca acacgccgcg atcgcccgat
     2161 ccgcaagaag ccgcgatgcc gactggcccg ctcaccttgt acggcggctc acggatgaat
     2221 ccgtcacggg acgctcgctg atcaacgccg cgcaagtcga accggcgctc ggctcgccct
     2281 cacacggcgg gttgcccgat accgtcgctc gacgcgtggg caaccagtgg catctgtgtg
     2341 gacacaagat ctacgtgact ggcgtgccgc tgctgtcctg gatcaacgtg ttggcgcgga
     2401 ccgacgagga cgaaccgcga ctaggccatt tcctggtgcc tcgcgatgcg gtgggcgtac
     2461 aaatagtgga gacctgggat ccgatcggca tgcgcgcctc ggcgagccac gatgccatct
     2521 tttcggacgt cgccatcccg cttgcggacg tggtcgcgct taagcccgct catctcgggc
     2581 tacagcgcga cgcgcatggt attgcctggt attttagctt gcttggcgcg gtctacgatg
     2641 gcgccgcgcg cgccgcacgc gattggctca ttgacttcct gaaccagcga cgccccagct
     2701 cgcttggcgg tgcttcgctc gccagcctgc cgaccgtaca ggagatcgtg gggcgcatcg
     2761 aaatcctgct tgcgaccaac gactggttga tgcgcagtca tgctgaggct ttcgacgcgg
     2821 gcaccgcacc cgactcgctt gcaggcatgc tcaagcatgt ggtcatcgat aatgcgacgc
     2881 agtccgtaga actcgccatc gaactgacgg gcaaccatgg gctggcacgt cgtaacccac
     2941 tagagcgaca ccatcgcaat gtgctgtgcg gccggattca tgcgccgtcg aatgcactgt
     3001 tgcggggcac tgccgcgcgc gctgcgctaa gcgctgtgca acgtgattcc gtaagcaatt
     3061 agccccaacc tgcattgctg ccacgaccat cgcgtcgtgg cagcatgccg tgtggttctg
     3121 actggacctg gattgcttaa aaaggtacag cccattgtct tcccggccga taaacacgca
     3181 gacaattccg ggccgactgc gacgcatcac atcgctttcg tggaatacaa atgtcaattc
     3241 ga
//
LOCUS       DATGBK010001327         2560 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_270914, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001327 DATGBK010000000
VERSION     DATGBK010001327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2560
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270914"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1138
                     /locus_tag="VKJ77_18550"
     CDS             <1..1138
                     /locus_tag="VKJ77_18550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014905497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC47325.1"
                     /translation="LDRMHAIRSIDTIGNTLVAEAGCILGNLRRAAAEEHRLLPLSLA
                     AEDSCQLGGNLSTNAGGVNVVRYGMTRELVLGLEAVLPNGEIFHGLRTLRKDNTGYDL
                     KQLLIGAEGTLGVITAAALRLYPRNDVRVVVLAAVNSSQQALDLFELLFERGGPRMQA
                     FEFFTAECLDMVLEQVDGMRAPFAERHPAYVLIELADTVDEAALRELVETVIGEALER
                     ELCVDAAVSESIAQVNSMWRLREEISEAQRADGPHVKHDVSLPIASIPAFLASAGARI
                     DKHHAGVRLIVFGHFGDGNLHYNLSRPVGAPRDFFKLHGEGLTAQVLDEVARYGGSIS
                     AEHGIGQLKREYFSRYKDPLEIRLMREIRKVFDPHGIMNPGKIF"
     gene            complement(1161..2180)
                     /locus_tag="VKJ77_18555"
     CDS             complement(1161..2180)
                     /locus_tag="VKJ77_18555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006757173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HMC47326.1"
                     /translation="MKRIAPALVIAGLSVALLVSIVLATGLGPTSIAPRLISRIALAH
                     LSNGSGDWSTSTDTIVWLIRLPRVLLAGIVGASLAMVGVALQAVTANRLADPHLLGVS
                     SGATLGAVAATLFLGAIFGPFTLSLMAFLGALLATAMVIALAHRRGRLDSDRLLLSGV
                     AVSFVMLAGANLLLYLGDQRATSSILFWTLGGVGLARWGLLGVPASLALLGGIFLLGR
                     RRELNALMTGDLAAVSLGVPVSRMRWEIFLVSALVTGAMVAVSGAIGFVGLVTPHLCR
                     PLVGAEHGRLLPVSALGGAILLIWADVAARTLIAPEDLPIGVVTALLGGTFFIVLMRF
                     GGRSR"
     gene            complement(2177..>2560)
                     /locus_tag="VKJ77_18560"
     CDS             complement(2177..>2560)
                     /locus_tag="VKJ77_18560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004527622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47327.1"
                     /translation="ADVPRVLVYDSGEDTPFTAGALAMPTALIKAAGGRNVMDDVQES
                     WTRVSWESVVARNPQAIVIVDYGSITAAQKIQFLLDQPALRNLDVIRARRFIVVPYDG
                     ATPGIRNVAAVETIARGLHPEAFAK"
BASE COUNT          534 a          798 c          799 g          429 t
ORIGIN      
        1 cctggaccgg atgcacgcaa ttcgcagcat cgatacgatc ggcaacacgc tggtcgccga
       61 agccggctgc attctcggca acctgcgtcg ggcagcagcg gaagaacatc gcctgctgcc
      121 gcttagcctc gccgccgagg attcgtgcca gttgggcggc aatttgtcga cgaacgcggg
      181 cggcgtcaat gtcgtgcgtt atggcatgac gcgggaactg gtgctcggac ttgaagccgt
      241 cctgccgaat ggcgaaatct ttcacggcct gcgcacgctg cgcaaggaca acaccggcta
      301 cgacctgaag caattgctga tcggcgcgga agggacgctc ggcgtcatta ccgccgcggc
      361 gctgcggctc tatccgcgca acgacgtgcg tgtggtcgtg ctggctgccg tgaattcgtc
      421 gcagcaggcg ctcgatcttt tcgaactcct gttcgaacgc gggggcccgc gcatgcaggc
      481 gttcgaattc tttaccgccg aatgcctaga tatggtgctt gaacaagtcg acggcatgcg
      541 cgcgccgttc gccgaacgtc atcccgctta cgtgctgatc gaactcgcgg acacggttga
      601 tgaagctgcg ttgcgcgaac tcgtggagac ggtgattgga gaagcgcttg agcgtgagtt
      661 atgtgtagat gctgcggtat ccgaatcaat tgcgcaagtg aacagcatgt ggcggcttcg
      721 cgaggaaatc tccgaagcgc agcgcgccga tggtccgcat gtgaagcatg acgtctcgct
      781 gccgattgcc tccattcccg cgtttcttgc ctcggctggc gcgcgtatcg acaagcatca
      841 cgccggggta cgcctgatcg tgttcggtca tttcggcgac ggcaatcttc attacaatct
      901 ctcgcgcccg gtgggcgcac cgcgcgattt ctttaagctt cacggcgagg gattgacggc
      961 gcaagtgctg gacgaagtgg cacgttatgg cggcagcatc agcgcggaac atggtatcgg
     1021 acaactcaag cgcgagtatt tcagccgcta taaagacccg ctggaaatcc gcctcatgcg
     1081 cgagattcgc aaggtcttcg atcctcacgg catcatgaat ccgggcaaga ttttctgata
     1141 agaacacggg cgcccgccga tcaccgtgag cgcccgccga agcgcatcag cacgataaaa
     1201 aacgtcccgc ccagcaacgc ggtgactacg cctatcggca gatcttcggg tgcaatcagc
     1261 gtacgggctg ccacgtccgc ccagatcagc aggatcgcgc cgcccagcgc cgaaaccggc
     1321 aacaagcgcc catgttccgc gccaactaat ggccggcata agtgtggcgt aaccaacccg
     1381 acgaaaccta ttgcaccact cactgccacc attgcaccgg tgacgagtgc gctgacgagg
     1441 aaaatctccc agcgcatcct gctgaccggt acgccgagcg acaccgccgc cagatcgccg
     1501 gtcatcaatg cattgagttc ccggcggcgc ccaagcagaa aaattccgcc gagcaaggcg
     1561 agcgatgcgg gaacgccgag cagaccccaa cgcgcgaggc cgacgccgcc aagcgtccag
     1621 aacaggatgg acgacgtagc gcgctggtcg ccgagataaa gcagcaggtt ggcccccgcg
     1681 agcattacga acgacacagc aacgccggaa agcagtaacc ggtcagagtc gagccggccg
     1741 cggcgatgcg cgagcgcgat gaccattgcc gtcgccagca gcgcgccgag aaacgccatc
     1801 agcgaaagcg tgaacggacc gaagatcgcg ccaaggaata aggttgcagc cacggcgccg
     1861 agcgtggcgc ctgagctgac accgagcaga tgaggatcgg cgagacggtt ggccgtgacg
     1921 gcctgcaacg cgaccccgac catggcgagc gaagccccca cgattcccgc aagcagcacg
     1981 cgtggcaagc ggatcaacca tacgatagtg tccgtcgatg tgctccagtc accgctccca
     2041 ttcgacaagt gcgcgagcgc gatgcgggag ataaggcgag gtgcgatcga tgtcgggccg
     2101 agcccggtgg ccagcacgat tgaaacaagc aacgcgacac tgagacctgc gatgaccagc
     2161 gcgggagcga tacgcttcac ttcgcgaatg cctcgggatg cagtccgcga gcaatcgttt
     2221 cgaccgccgc gacgttgcga atgccgggcg ttgcgccgtc gtacggaacg acgatgaagc
     2281 gccgcgcgcg gatcacatcg agattacgca gcgccggttg atcgagcagg aactggatct
     2341 tctgcgcggc cgtgatcgaa ccgtagtcga cgatcacgat cgcttgcgga ttgcgcgcga
     2401 cgacgctctc ccagctcacg cgtgtccagc tttcctgcac gtcgtccatt acgttgcggc
     2461 cgccggctgc tttgatcagc gcggtcggca tggcgagcgc gcctgccgtg aaaggggtgt
     2521 cctcgccgct gtcatagacc aacacgcgag gcacatctgc
//
LOCUS       DATGBK010001328         4084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_177575, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001328 DATGBK010000000
VERSION     DATGBK010001328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4084
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177575"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..759
                     /locus_tag="VKJ77_18565"
     CDS             <1..759
                     /locus_tag="VKJ77_18565"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HMC47328.1"
                     /translation="FARVFIALHGGYGENGQLQGALDFYGIKYTGSGVLGSALGLDKF
                     RTKLVWQQTGVPTPPFEVVMRGDDYDAAAQKIVPKLGLPLFVKPASEGSSVAVIKVKS
                     AETLVPALIEAAKFDKIVLVEKSIEGGGEYTCCIAGDLDLPIIKIVPAGEFYDYNAKY
                     IADDTQYPIPCGLTPADETRMKQLSRRAFDVLGCTDWGRADFMMDGDGNPYFLEVNTA
                     PGMTDHSLPPKAARAVGISYKDLVVKVLSLTLQD"
     gene            772..1524
                     /locus_tag="VKJ77_18570"
     CDS             772..1524
                     /locus_tag="VKJ77_18570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004522020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HMC47329.1"
                     /translation="MWNNARQLNLTANALHVLLVFVLLGAAGYWAIQRPEFRLREIQI
                     DGDTLHINSPTVRASVVGHLKGNYFTVDLDAARTAFEQMPWVRHASVRRVWPNALAVT
                     LEEFKPLGTWGTDQLVSVDGDLFTANQGELDDDLPAFEGPDGSAKEVVARYHDFTKWF
                     APLDAHPEEVILSPRYAWTVKLSNGTQIELGRERNQDTLFDRSRRFVAAWSAVTGRWG
                     NDIEYADLRYPNGFAIKAAGMRFISDTDKAKK"
     gene            1552..2784
                     /gene="ftsA"
                     /locus_tag="VKJ77_18575"
     CDS             1552..2784
                     /gene="ftsA"
                     /locus_tag="VKJ77_18575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014898179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HMC47330.1"
                     /translation="MSKDYKDLLVALDIGTSKVVAIVAELKGEGHYEVIGLGQSDSKG
                     LKKGVVVNIEATVQSIQRALEEAELMADCKITNVFTGIAGSHIRSFNSSGMVAIKDKE
                     VTQTDVARVIETAKAINIPTDQQVLHILTQEFIIDGQEDVREPIGMSGIRLEVKVHIV
                     TGAVSAAQNIVKCVRRCGLEVNDLILQPLASSLAVLTEDEKELGVVLVDIGGGTTDIA
                     IFSEGAIRHTAVIPIAGDQITSDVAMALRTPTPDAEDIKVSYGIAKQALADPDEMIEV
                     PGLGERGPRTLSRQALAAVVEPRVEELFSLVQQVVRESGYEELLSSGVVLTGGASMMP
                     GMVELGEDIFLKPVRIGVPEYAGGLADVVRNPRYSTAMGLLVEGRSQRMRGRKVAVQS
                     GSMGQVFGRMKDWFLGNF"
     gene            2884..4077
                     /gene="ftsZ"
                     /locus_tag="VKJ77_18580"
     CDS             2884..4077
                     /gene="ftsZ"
                     /locus_tag="VKJ77_18580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HMC47331.1"
                     /translation="MDFEMLETETNGTIIKVVGVGGAGGNAVQHMINRGVQGVDFIVM
                     NTDAQALARSRATQVIQLGNTGLGAGAKPDMGKAAAEDARERIADALRGAHMVFITAG
                     MGGGTGTGAAPVVAQIAKEMGILTVGVVSKPFEFEGGRRMRVAEAGSQQLEDHVDSLI
                     VVLNDKLFEVMGDDAEMDKCFQCADDVLNNAVAGIAEIINVDGLVNVDFEDVKTVMGE
                     QGKAMMGTATVAGVDRARLAAEQAVASPLLEGVDLSGARGVLVNITSSRSLRLSETRE
                     VMNTIKSYAAEDATVIFGAVYDDAMGDALRVTVVATGLGRAAKKQQAAPMTLLRTGTD
                     NAPIAHAQHSYAPQQSSGTDYAHLDAPAVWRQTRETAASHVQALQEKGVDTYDIPAFL
                     RKQAD"
BASE COUNT          846 a         1072 c         1412 g          754 t
ORIGIN      
        1 tttgcgcgtg tgtttatcgc gttgcatggc gggtatggcg agaacggcca gttgcagggc
       61 gcgctcgatt tctacggcat caagtacacg ggcagcggtg tgctgggctc agcactcggc
      121 ctcgataaat tccgcacgaa gctcgtgtgg cagcaaacgg gcgtgcccac gccgccgttc
      181 gaagtcgtga tgcgcggcga cgactacgac gctgcggcgc agaagattgt tccgaagctc
      241 ggtttgccgc tgttcgtgaa gccggcgagc gaagggtcga gcgtcgcggt gatcaaggtg
      301 aagagcgcgg aaacgctggt gccggcgctg attgaagcag cgaagttcga caagatcgtg
      361 ctcgtcgaga agagcattga aggcggcggt gaatacacgt gctgtatcgc gggcgacctg
      421 gatttgccga tcatcaagat cgtgccggcc ggtgagtttt acgactacaa cgcgaagtac
      481 attgccgacg acacgcagta cccgattccc tgcggcctca cgcccgccga cgaaacgcgc
      541 atgaagcagc tgtcacgccg tgcattcgac gtgctcggct gcaccgattg gggccgtgcg
      601 gatttcatga tggacggtga cggcaatccg tacttcctgg aagtgaacac cgcgccgggc
      661 atgacggacc actcgctgcc gccgaaagcg gcgcgtgcgg tcgggatcag ctacaaggat
      721 ctggtggtga aggtgttgtc gttgacattg caggattgag acgtactgaa catgtggaat
      781 aacgctcgcc aactgaacct cacggccaac gcactgcacg tattgctcgt gttcgtgctg
      841 cttggggccg ccggttattg ggcgatccag cggccggagt ttcgcctgcg cgagatccag
      901 attgacggcg acacgttgca catcaattca ccgaccgtgc gcgcgagcgt cgtggggcat
      961 ttgaagggca actacttcac ggtcgatctc gacgcagcac gtaccgcgtt cgaacagatg
     1021 ccgtgggtgc gccacgcgag cgtgcggcgc gtgtggccga atgcgctggc ggtaacgctg
     1081 gaagaattca agccgcttgg cacatggggc acggatcaac tggtcagcgt tgacggcgat
     1141 ctgttcacgg cgaaccaggg cgagctcgat gacgacttgc ccgcgttcga aggcccggac
     1201 ggatcggcga aagaagtggt ggcgcgctat cacgatttca cgaagtggtt tgcgccgctc
     1261 gacgcgcatc cggaagaagt catcttgtcg ccgcgatatg cgtggacagt caagctttcg
     1321 aacgggacgc agatcgaatt ggggcgggag cgcaatcagg acacgttgtt tgatcgcagc
     1381 cgacggttcg tggcggcgtg gtcggcggtg acggggcggt ggggaaatga catcgagtac
     1441 gcggatttgc gctatccgaa cggctttgcg atcaaggccg ccggcatgcg cttcatcagc
     1501 gacaccgaca aagcgaagaa gtaagcagac atcacaggca atgagcaccc tatgagcaaa
     1561 gactacaaag acttgctggt cgccctcgac atcgggacgt cgaaggtggt ggctatcgtc
     1621 gccgagttga aaggcgaagg ccactacgag gtgatcgggc tcggacagag cgactcgaag
     1681 ggattgaaga agggcgtggt ggtcaacatc gaagccacgg tccagtcgat ccagcgcgcg
     1741 ctcgaagaag ccgaactgat ggccgattgc aagatcacga atgtgttcac cggcatcgcc
     1801 ggcagccaca ttcgaagctt caattcgagc ggcatggttg caatcaagga caaggaagtc
     1861 acgcagaccg atgtggcgcg tgtgattgaa acggccaagg cgatcaacat cccgaccgat
     1921 cagcaggtgc tgcatatcct gacgcaggaa ttcatcatcg acgggcagga agatgtgcgc
     1981 gagccgatcg gcatgagcgg catccggctg gaagtgaagg tgcacatcgt gacgggcgcg
     2041 gtgagcgcgg cgcagaacat cgtgaagtgc gtgcgccgtt gcggcctgga agtgaacgac
     2101 ctgattctcc agccgctggc ttcgtcgctg gcggtgctga cggaggacga gaaggaactg
     2161 ggcgtggtgc tggtggatat cggcggcggc acgaccgaca tcgcgatctt cagcgaaggc
     2221 gcgatccgtc atacggcggt gattcctatc gccggcgatc agatcacgag cgacgtcgcg
     2281 atggcgctgc ggacgccgac gcccgacgcg gaagatatca aggtgagcta cgggatcgcg
     2341 aaacaggcgc tggcggatcc ggatgaaatg atcgaagtgc cgggactcgg cgagcgcggt
     2401 ccgcgcacgt tgtcgcggca agcgctggcg gctgttgtcg agccgcgcgt tgaagaactg
     2461 ttctcgctgg tgcagcaggt cgtgcgcgag tcgggctacg aagaattgct gagcagcggc
     2521 gtggtgctga ccggcggcgc atcgatgatg cccggcatgg ttgaactcgg cgaagacatc
     2581 ttcctgaagc cggtgcgtat cggcgtgccc gaatacgcgg gcggtctggc agatgtcgtt
     2641 cgcaatccgc gttattccac agcgatgggt ttgctcgtcg aaggccgttc gcaacgcatg
     2701 cgcggccgca aggttgccgt gcagtctggc tcgatgggac aggtttttgg acgtatgaaa
     2761 gattggttcc tgggaaattt ctgaacacaa agaattcgcg ctggtgccgg cggctggcgc
     2821 gcgacaagag gttgcccgat ctcttgccga ataacgccga ttttcattct tgacggaggc
     2881 aatatggatt tcgaaatgct ggaaacggaa accaacggaa cgatcatcaa ggtcgttggt
     2941 gttggtggtg caggcggaaa cgcagtgcag cacatgatca accgcggggt ccagggcgtg
     3001 gacttcatcg tgatgaatac ggatgcgcag gcgctcgcgc gttcgcgtgc cacccaggtg
     3061 atccagttgg gcaacacggg tcttggagcg ggtgcgaagc cggacatggg caaggccgca
     3121 gcggaagatg cgcgtgagcg tattgccgat gcattgcgcg gcgcgcacat ggtgttcatc
     3181 accgcaggca tgggtggcgg cacgggtacg ggcgcggcgc cggtggtggc tcagatcgcc
     3241 aaggaaatgg gtattttgac cgtaggtgtg gtcagcaagc cgttcgagtt tgaaggcggc
     3301 cgccgcatgc gcgtggctga agcgggatcg cagcaactgg aggatcacgt cgactcgctg
     3361 atcgtcgttc tgaacgacaa gctgttcgag gtgatgggcg atgacgctga gatggacaag
     3421 tgcttccagt gcgctgatga cgtgttgaac aacgctgttg ccggcatcgc ggaaatcatc
     3481 aacgtcgacg ggctggtcaa cgtcgacttc gaagacgtga agacggtgat gggcgagcaa
     3541 ggcaaggcaa tgatgggcac ggcgacggta gcaggtgttg atcgtgcacg tctggcagct
     3601 gagcaagctg tggcaagtcc gttgctggaa ggcgtggatc tgtcgggtgc acgcggcgtg
     3661 ctggtgaaca tcacgtcgag ccgttcgctg cgcttgtcgg aaacgcgcga agtgatgaac
     3721 acgatcaagt cgtatgcagc agaagacgcg accgtgatct tcggtgccgt gtatgacgac
     3781 gccatgggcg acgcattgcg cgtgacggtt gtagcaacgg gcctcggccg tgcagcgaag
     3841 aagcaacaag ctgcgccgat gaccttgctg cgtaccggca cggacaacgc accgatcgcg
     3901 cacgcgcagc atagttacgc tccgcagcaa tcgagcggca cggattacgc tcatctggac
     3961 gcgccggctg tgtggcgtca gacgcgtgaa acggcggctt cgcacgtgca ggcgctgcag
     4021 gaaaagggcg tggatacgta cgacattccg gcgttcttgc gtaagcaagc cgactgatca
     4081 tttt
//
LOCUS       DATGBK010001329         2938 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_131252, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001329 DATGBK010000000
VERSION     DATGBK010001329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2938
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131252"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..518)
                     /locus_tag="VKJ77_18585"
     CDS             complement(15..518)
                     /locus_tag="VKJ77_18585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1178 family protein"
                     /protein_id="HMC47332.1"
                     /translation="MKVLDLKCSHDHRFEGWFASTDEFESQLSRKLVACPVCSTTEVS
                     RMPSAPRLNLSAARSSSSSDQGEKEAAGSNGSNRSNVTQAAPPPQDADQALQARALHF
                     MREILAKTENVGDRFAEEARRMHYDEAPARNIRGVATPEDAHALMEEGIDVMPLPVPA
                     ALKEPLQ"
     gene            complement(747..1349)
                     /locus_tag="VKJ77_18590"
     CDS             complement(747..1349)
                     /locus_tag="VKJ77_18590"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HMC47333.1"
                     /translation="MADQSLDFPDSDDGLLEKTVESKLLHQGKFLTLKIDTVELPDGK
                     HATREFVEHPGAVMILPLFDDGRVLLERQYRYPIAKVLLEYPAGKIDPNESELACAKR
                     ELLEETGYTAREWFLLTRIHPVISYSTEFIDLYLARGLTAGESKLDEGEFLETFIADR
                     SQIFEWIRSGHISDVKTIIGSFWLEKVMSGEWALGDPISD"
     gene            complement(1421..1717)
                     /locus_tag="VKJ77_18595"
     CDS             complement(1421..1717)
                     /locus_tag="VKJ77_18595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015601582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2818 family protein"
                     /protein_id="HMC47334.1"
                     /translation="MSAAGWFIVLLALVGANLPFANQRLFSVVSLKMTKKNGWIRIAE
                     LIVLYFVVGALGFMLEARAGNRFEQGWQFYAVTFSLFLVLAFPGFTFQYLVKRR"
     gene            complement(1717..>2938)
                     /gene="nuoN"
                     /locus_tag="VKJ77_18600"
     CDS             complement(1717..>2938)
                     /gene="nuoN"
                     /locus_tag="VKJ77_18600"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018442907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HMC47335.1"
                     /translation="AVSIIYSRKYLEDRDLFRGDFFLLGLFSLLGQCVMISGNNFLTL
                     YLGLELMSLSLYAVIALRKDSPQANESAMKYYVLGALASGFLLYGISMLYGATGSLEL
                     NEVAKAIATGRINDAVLLFGVIFVVAGVAFKMGAVPFHMWVPDVYQGAPTAMTLLTGG
                     GPKAAAFAWGLRFLVMALLPLAVDWQEMLVILAALSLIVGNVTGIVQKNIKRMLAYSA
                     ISNMGFVLLGMLAGVVDGKADGAANAYSSAMFYSIIYLMTTLGTFGMVMLLARKDFEA
                     ETLDDFKGLNQRSPVFAFVMMIMMFSLAGIPPMVGFYAKLAVLEATMNAGLTWLAVLA
                     VLSSLVGAFYYLRIVKLMYFDAPTDASPIVADNLKRALLAFNGLAVLVLGIVPGPLMN
                     ACLAAITHTLPFQL"
BASE COUNT          668 a          884 c          833 g          553 t
ORIGIN      
        1 tgaacatgct cagcttattg cagcggctct ttcagtgcgg ccggcacggg caacggcatc
       61 acgtcgatgc cttcttccat caatgcgtgc gcatcttccg gcgttgcgac gccgcgaata
      121 ttgcgcgccg gcgcttcgtc gtaatgcatg cgcctcgcct cttcagcaaa acggtcgccc
      181 acgttctcgg tcttcgcgag aatttcccgc atgaagtgca acgcacgcgc ctgaagcgct
      241 tgatcggcgt cttgcggcgg tggggccgcc tgcgtaacgt tggatcggtt ggatccgttc
      301 gatccagcgg cctctttttc gccctggtcg gaactgctgg acgagcgagc tgccgacaaa
      361 ttcaggcgcg gcgccgacgg catgcggctc acctccgttg tcgagcacac cgggcaagcc
      421 acgagcttgc gcgacaactg ggattcgaac tcatcggtcg aagcaaacca gccttcgaaa
      481 cgatggtcgt gtgagcactt caagtcgaga accttcatgc tgatcggggc ttgtcagaaa
      541 gtttaatcgc aaaaacgcgt tttgtgaacg atcgttcgca aaaaatgaca atgcgaccgt
      601 cggatgacgt gtagatacac agcttcgatt ttagcccggc gttggaacgc gtgccgaacg
      661 atgagtaacc ttgattgagc agacaaataa aaagcggcct tcacggccgc ttttttattg
      721 aatgcgtcgg gcatttcagt cgcagctcag tcgctgatcg gatcacccaa cgcccactca
      781 cccgacatga ccttctccag ccagaagctg ccgatgatcg tcttgacgtc gctaatatgg
      841 ccgctcctga tccactcgaa aatctgcgac cggtccgcga tgaaggtctc gaggaactca
      901 ccctcgtcga gcttgctttc gcctgcggtc aagccgcggg ccagatacag gtcaatgaat
      961 tcggtggagt atgaaatgac cggatgaatc cgcgtcagga gaaaccattc gcgtgccgta
     1021 taaccggttt cttcgaggag ctcccgtttt gcacacgcca gttcgctctc gttcgggtcg
     1081 atcttgccgg cgggatattc gagcaaaacc ttggcgatcg ggtatcgata ctgccgttcg
     1141 agcagcacgc ggccgtcgtc gaataacggc aggatcatca cggcacccgg atgttccacg
     1201 aactcgcgcg tggcgtgttt gccgtctggc agttcgaccg tatcgatctt gagcgtaaga
     1261 aacttgccct gatgcagcaa cttgctctcg accgtcttct cgagcaggcc atcgtcggaa
     1321 tcggggaaat cgagagattg gtcagccatc gtgcaccttg aaggaaacgc gttaagttaa
     1381 gtcactaagc gcgaagatca ggccacgacg gccgttgccg tcagcggcgc ttgacgagat
     1441 attggaatgt gaagccgggg aaagcgagca ccaggaacag gctgaaggtc acggcgtaaa
     1501 actgccagcc ctgctcgaag cggttgcccg cacgcgcctc aagcataaag ccgagcgcgc
     1561 ccacgacaaa atacaacacg atcaattccg cgatgcgaat ccagccattt ttcttcgtca
     1621 tcttgagtga gacgacagag aaaagacgct gattcgcaaa cgggaggttg gcgcctacca
     1681 gcgccaacaa cacgataaac cagcccgctg ccgacattac agctggaacg gcaaggtgtg
     1741 cgtgatcgca gcgagacagg cgttcatcag cggtccgggg acaatgccga gcaccagcac
     1801 agccaagccg ttgaacgcga gcagcgcgcg cttcaggttg tccgcgacga tcggcgatgc
     1861 atcggtcggt gcatcgaagt acatcagctt gacgatacgc aggtagtaga acgcacccac
     1921 cagtgacgac agtacggcca gcaccgcgag ccacgtcagg ccggcgttca tggtggcctc
     1981 gagtacggca agcttcgcgt agaagccgac catcggcgga atgccggcga gcgagaacat
     2041 catgatcatc atcacgaacg cgaacaccgg gctacgctgg ttcaggccct tgaagtcatc
     2101 gagcgtttcc gcttcgaagt ccttgcgtgc cagcagcatc accatgccga acgtgccgag
     2161 cgtggtcatc aaatagatga tgctgtagaa catcgccgag ctataggcgt tcgccgcgcc
     2221 gtcagccttg ccgtcgacca cgcctgccag catgccgagc agcacgaagc ccatgttcga
     2281 gatagccgag tacgccagca tccgcttgat gttcttctgc acgataccgg tcacgttacc
     2341 cacgatcagc gacaacgcag ccaggatcac cagcatctct tgccagtcca ccgccagcgg
     2401 cagcagcgcc atcaccagga aacgcagccc ccacgcaaat gccgcggcct tcgggccacc
     2461 gccggtgagc agcgtcatcg cggtcggggc accttggtac acgtcaggca cccacatatg
     2521 gaatggcacc gcgcccatct tgaacgccac gcctgctacc acgaagatca cgccgaacaa
     2581 caagactgcg tcgttgatgc ggccggtcgc gatcgccttc gctacttcgt tcagttcgag
     2641 cgagccggtc gcgccgtaaa gcatcgagat cccgtagagc aggaaacccg aagcaagcgc
     2701 gccgagtacg tagtacttca tcgcggattc gttggcttgc ggcgaatcct tgcgcaacgc
     2761 gatcactgcg tacaacgaca acgacatcag ttccaggccg agatacagcg tcaggaagtt
     2821 gttgccggag atcatcacgc actggccgag cagcgagaac aagccaagca agaagaagtc
     2881 gccgcggaac aggtcgcgat cttcaaggta cttgcgcgaa tagatgatcg aaaccgcg
//
LOCUS       DATGBK010001330         3235 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108452, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001330 DATGBK010000000
VERSION     DATGBK010001330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3235
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108452"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            341..1585
                     /locus_tag="VKJ77_18605"
     CDS             341..1585
                     /locus_tag="VKJ77_18605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HMC47336.1"
                     /translation="MIDDTRSTAAQTAPVHASRSRRHTLVLAAGLSFGSAIALGLTRF
                     SYALLLPAMKADLGWSFAQAGAMNTANALGYLLGALAFPFVSRRWPVGLCFIAGCVLT
                     AALMTIGGLVSDTHALLAQRVVTGISSALIFVGGGVLAARLASAHPRDAGLVLGLFYG
                     GAGSGIVVAALLVPMTTFNGPHGWQWAWFALAAACAFASIAAIAAARRIEHSEPAPAL
                     SAAHAASLLPPSPLPWRRVGFMLAGYALFGVGYIGYMTFLIALLRAAGMSAAVVTAFY
                     VLLGLATIVSARLWSGLLNRMSGGQALAVFNAVLAFATVMPALFTQPAVAFVSGALFG
                     ATFLSAVASTTAFVRHNLPAMQWTRGIGAFTIVFAVGQIVGPIVIGWISDGAGLARGL
                     VYSSILLAAGAVLAMLQKPLRV"
     gene            complement(1753..2091)
                     /locus_tag="VKJ77_18610"
     CDS             complement(1753..2091)
                     /locus_tag="VKJ77_18610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4148 domain-containing protein"
                     /protein_id="HMC47337.1"
                     /translation="MTKSAKLLLPALLLASALAAPSFAFAQDNNAPVTRAEVRAQLTQ
                     LEKAGYSPATNDNYYPQALQEAQQRVDASTGVAAQAYGPSTSGTSASGLRVTVAPDSG
                     NDQHSIYFGH"
     gene            complement(2376..3155)
                     /locus_tag="VKJ77_18615"
     CDS             complement(2376..3155)
                     /locus_tag="VKJ77_18615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013691053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HMC47338.1"
                     /translation="MTTARIAYVQWPEGLQPAGPAWDAIRRSVETARPDILITNEMPF
                     GPWLAEHASFDAQAAQRSIALHEHALDALSSLAAAAVISSRPVAFDGRLANEAFVLES
                     NTYRMIHHKKYFPQEPGFFEEAWYVRGAGGFDCVQVGQVKVGVLLCTELFFNDRARAY
                     GRDGADLIVTPRATGTSLSRWKTAGTMAAIVSGAWFVSSNRYGPGALGQQFGGAGFVV
                     SPQGVLLEETSEATPMRVVTIDLDAARAQKTQYPCYVKEMP"
BASE COUNT          585 a          926 c         1003 g          721 t
ORIGIN      
        1 aaacggcgcg ttggtggtga ccggtgtggc gctcgtgctc ggatgcgtgg cgacatgtac
       61 gagtgtcagg ccgtcgggtg tgcgcagcga gaaatagggt cgtgagcctg tgccgcgggt
      121 aacgggatag cgtgcttcgg cgcgctatct gcgttatgcg gccggtttta atcgagcaga
      181 agagggggct cggcatcaag gaatgcgagc aggcagcgaa gggcgcgagg gcgtaaggcg
      241 cgttaccata acgacaggtc gccagatacg atggccgcat ccggtaatgt tcatgtcctt
      301 caaattcctc tagcccgtca gcccacagcc gccttagccg atgatcgacg acacacgcag
      361 caccgcggca cagacagcac ctgttcatgc gtcacgctcc cgccggcaca cgctcgttct
      421 ggccgcgggt ttgtcattcg gcagcgcgat cgcgctgggc ctcacgcgct tctcctacgc
      481 actcctgctg cccgccatga aggccgatct cggctggagc ttcgcgcaag ccggggcgat
      541 gaacaccgcc aatgcgcttg gttacctgct tggcgcactc gcatttccat ttgtatcgcg
      601 tcgatggccc gtgggtctct gtttcatcgc cggatgtgtg ttgacggcgg cgttgatgac
      661 catcggtggc ctggtttccg atacccatgc gttgctcgct caacgggtcg tcaccggtat
      721 cagcagtgcg ttgatcttcg tcggcggcgg ggtgttggcg gcgcgtctcg catcggccca
      781 tccacgcgat gcaggcctgg tgctcgggct tttttacggc ggtgccggta gcgggatagt
      841 tgtcgcggcg ctgctggtgc ccatgaccac gttcaacggt ccgcacggtt ggcaatgggc
      901 ctggttcgcg ttggccgcgg cgtgcgcgtt cgcgtccata gcagcgattg ccgctgctcg
      961 caggatcgag cacagcgaac ctgcgccggc tctctctgct gcacacgcgg cttcgctact
     1021 gcccccaagc cctttgccct ggcgacgtgt cggtttcatg ttggctggtt acgcgctctt
     1081 cggcgtgggt tatatcggct acatgacctt tcttatcgcg ctgcttcgcg cggccggcat
     1141 gagtgcggcg gtggtgaccg cgttctacgt gctgctcggt ctggcgacaa ttgtctcggc
     1201 ccggctctgg tcagggttgc tcaaccgcat gagcggcggg caggcgctgg cagtgttcaa
     1261 cgcggttctc gcgttcgcta ccgtgatgcc cgcgctgttc acgcaaccgg cggtggcatt
     1321 cgtatcgggt gcgttatttg gcgcaacgtt tttatcggcg gtggcgtcga ctaccgcgtt
     1381 cgtccggcac aatcttccgg ccatgcaatg gacccgcgga atcggtgcat ttacgatcgt
     1441 gttcgctgtg gggcagattg tcgggccgat agtaattggc tggatctcgg atggtgccgg
     1501 cctcgctcgt ggactcgtgt attcgtcgat cctgcttgcc gcaggcgctg ttctcgcgat
     1561 gttgcagaag ccattgcgcg tttgagtgcg gtataaggac cttctgctga tccgaggttg
     1621 gacttagtta atattgagca tagcttagtt gtctgctgcg tataaaaaat cgctcagagc
     1681 ctacaaggca atgagcgatt tttaagtccc tacgctaagc ggtcaatccg aggccagcta
     1741 gtcaatctta tcttagtgac caaagtagat cgaatgctgg tcgttgccgg aatccggggc
     1801 gacggtaacc cgcaagcctg aagctgatgt accgctggtc gacgggccat aggcttgtgc
     1861 tgctaccccg gtcgatgcat caacgcgttg ctgcgcttcc tgcagcgctt ggggatagta
     1921 gttgtcgttg gtcgccgggc tgtagccggc cttctccagc tgggtcaact gcgcgcggac
     1981 ttccgcacgc gtcactggcg cgttgttgtc ctgagcgaat gcaaatgaag gagcggcgag
     2041 cgcagaggca agaagcaggg ccggcaaaag taacttggct gacttggtca tgatgaaacc
     2101 tccagaattt gttttcgatt tcggaagacg ttgagactaa gtgcctgtgt ctgcatgcgc
     2161 ttctgatgaa aacaagtcta ggtcgcctat caatggttta acacgatagt ttcggcgaaa
     2221 gatatttgcc gtttcagcaa caataagcgc atttccctag ggtggtgcat gcgtgttagc
     2281 tttcttcggt aataaatcga cgagttaaac ggtcgctaaa cgaatcagca attaatgccc
     2341 gctatagcgc gtttgccgtg ccctcactca tgcggtcagg gcatctcttt cacataacac
     2401 gggtattgcg ttttctgcgc gcgggcagca tcgaggtcga tcgtgacaac gcgcatcggc
     2461 gttgcctcgc tggtttcctc aagcagaaca ccctgaggtg acaccacaaa tccggcgcct
     2521 ccaaactgtt ggccgagcgc gccgggacca tacctgttcg aactgacgaa ccacgcaccc
     2581 gacacaatgg ccgccatcgt gcccgccgtt ttccatcgag acagcgacgt tccggtggcg
     2641 cgcggtgtca cgatgaggtc ggcgccatcg cgaccatacg ctcgtgcgcg gtcgttgaag
     2701 aacaactcgg tgcagagcag aacgcccacc ttgacctgtc cgacttgcac gcaatcgaat
     2761 ccgcccgcac cacgcacgta ccatgcttcc tcgaagaaac caggctcctg cgggaagtat
     2821 ttcttgtgat ggatcatgcg atacgtgttc gattccagca cgaacgcctc gttggcgaga
     2881 cggccgtcga aagcaaccgg acgcgatgaa atcaccgctg ccgcggcaag gctgctcaac
     2941 gcatcgaggg cgtgctcatg cagcgcgatg ctacgctgcg cggcttgcgc atcgaagctt
     3001 gcatgctccg caagccacgg gccgaacggc atttcattgg tgatgagaat gtcggggcgg
     3061 gcagtttcga cggagcggcg aatggcatcc catgccggcc cggccggttg caatccttcg
     3121 ggccactgta catacgcaat gcgggcagtt gtcatgatga agcagtcgat atcaccaagc
     3181 ggggttactg ggacgcgcga aagtgctcga ccaggaagtc gatgaacgca cgcat
//
LOCUS       DATGBK010001331         2536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_201327, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001331 DATGBK010000000
VERSION     DATGBK010001331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201327"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2452)
                     /locus_tag="VKJ77_18620"
     CDS             complement(<1..2452)
                     /locus_tag="VKJ77_18620"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HMC47339.1"
                     /translation="MAEDDLKITVLPQQFSIDVMLEKYAKGDETRIDDIYRRVARGVA
                     LAEPEARRKQVETEFFENFQRGALGAGRIMSAAGTGIQATLINCFVQPVGDAIQGVDE
                     DGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHSTGSSASGPCSYMDVFDASC
                     RTVESAGSRRGAQMGILDCSHPDLLEFIAAKHVKGRWNNFNVSVAVTDEFMQAVADDT
                     PWQLVHRAEPSPSFRASTDARQRDDGLWVYREVRAREVWDTIMRSTYDVAEPGVVFVS
                     RMNDDNNLRAVETIRATNPCGEQPLPAYGCCNLGPLNLTRFVREPFAQRHGGTPVFDW
                     DGLVKSTRTQVRFLDDVLDVTLWPLPEQDQEAQAKRRIGVGFTGLGDTLVMLGVRYNS
                     QEGRDFATRVARTMRDEAYRASVELARERGAFPLFDAKKYLETGTFASRLPDDIKAEI
                     HRDGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWSYQRTKRMADGSRQSFSVEDH
                     AYRLYRELGGDVKVLPEYFVSALDMSANDHLEMMAAVQPFVDTSISKTVNVPADYPFD
                     AFKDLYFDAWRRGLKGLATYRPNDTLGAVLSVTPETPAIAASDPSDAADAEVQLDPLR
                     IAIDHRPRGELPAIIEKVEYLTQAGKKSLYVAVSFMEITGRLSGEDVTIERPIEFFIP
                     TGQRDESQQWITATMRSLSLAARGGFVARNLQDMRKVSWDRGQVRLGDVERPGGHKAP
                     RWHDSEVAALAYAIQQILYRRGFLDIEGDQVPSRLLAQRRHESAQARLVSASPVSGDD
                     DITTVVEDNADAANPHALL"
BASE COUNT          500 a          821 c          727 g          488 t
ORIGIN      
        1 gcagtagcgc atgcgggttg gcagcgtccg cgttgtcctc cacaaccgtc gtgatgtcgt
       61 catcgccgga aacgggtgat gccgatacca gcctcgcctg ggcgctctca tggcgacgct
      121 gtgcaagcaa ccgcgacggc acttgatcgc cttcgatatc gagaaagccc cgtcgataca
      181 aaatctgctg aatcgcatat gcaagcgccg cgacttctga atcgtgccaa cggggagcct
      241 tatggccgcc gggacgctcg acgtcaccaa gacgcacttg cccacgatcc cacgatacct
      301 tgcgcatatc ctgcagattg cgcgcgacaa aaccaccccg cgccgccagc gacaacgacc
      361 gcatggtcgc cgtaatccac tgctgggatt cgtcgcgctg ccccgttggt atgaagaact
      421 cgatgggccg ctcgatggtg acatcctcgc cactcagccg cccggtaatc tccatgaacg
      481 acaccgctac gtaaagcgac ttcttgccgg cttgcgtgag gtactccacc ttctcgatga
      541 tggccggcaa ctcgccgcgc ggacgatgat cgatggcaat gcgcaacggg tccagttgaa
      601 cctcggcatc cgccgcgtcg gagggatcgg atgcagcgat cgcgggtgtt tcgggcgtta
      661 ccgacaacac cgcgcccagc gtgtcgttag gacggtaggt ggcaagcccc ttcagacccc
      721 ggcgccaggc atcgaagtaa aggtccttga acgcatcgaa cggataatcg gccggtacat
      781 tgaccgtctt cgagatggat gtatcgacga aaggctgcac cgccgccatc atttccagat
      841 gatcattcgc ggacatatcg agtgcgctca cgaaatactc cggcaacacc ttaacgtcgc
      901 cacccaattc gcgatacaag cggtacgcat ggtcttccac cgagaacgat tgccggctgc
      961 cgtcagccat gcgcttggta cgctgatagg accatgagaa cgccggctca atgccgttcg
     1021 atgcgttgtc agcgaaggcc aggctcaccg tgccggttgg cgcaatggaa agcaggtggc
     1081 tgttgcgaat gccgtcgcga tgaatctccg ccttgatgtc gtctggaagg cgcgacgcga
     1141 aagtgcctgt ttcaaggtac ttttttgcat cgaacagcgg gaatgcacca cgctcgcgcg
     1201 ccagttccac cgacgcgcga tacgcctcgt cgcgcatggt tcgcgccacg cgggtcgcaa
     1261 agtcgcgccc ttcctgcgag ttgtagcgca cgccgagcat cacgagcgtg tcgccgagcc
     1321 cggtaaaacc cacgcctatg cgccgcttcg cctgcgcttc ctggtcttgc tcgggtagcg
     1381 gccagagcgt tacgtcgagc acatcgtcga gaaaacgaac ctgcgtgcgg gtgctcttca
     1441 ccaagccatc ccagtcgaat accggcgttc ctccatgacg ctgcgcgaac ggttcacgca
     1501 cgaaacgtgt caggttcaac gggccgaggt tgcagcaccc gtaggcaggc aacggctgct
     1561 cgccgcaggg attggttgcg cgaatggtct ccaccgctcg caggttgttg tcgtcattca
     1621 tgcgcgatac gaacaccacc cccggctccg cgacgtcata ggtcgagcgc atgatcgtgt
     1681 cccacacctc ccgcgcccgc acttcgcgat aaacccacag accatcgtca cgctgccgag
     1741 catcggttga tgccctgaac gaaggtgacg gttcggcgcg atgcacgagt tgccacgggg
     1801 tatcgtcagc aacggcttgc atgaactcgt cggtcaccgc gaccgatacg ttgaagttgt
     1861 tccaacggcc cttcacatgc tttgccgcga taaattcaag caggtcagga tgtgagcaat
     1921 ccagaatgcc catctgcgcg ccgcgccgcg acccggcgct ttcaacggtt cggcatgacg
     1981 catcgaaaac atccatgtaa ctgcacggtc ccgacgccga cgatcccgtg gaatgcacgc
     2041 gtgcaccctt cggacggatc gcggaaaagt tgtaacccac gccgccgccg cgccgcatgg
     2101 tttcggctgc ttgcagcaaa gcaacgtaga taccgggcaa accgtcctcg tccacgccct
     2161 ggatggcgtc gcccaccggc tgcacgaagc agttgatgag cgttgcctgg atacccgttc
     2221 cggccgcgct catgatgcgg cctgccccta gggcgccacg ctggaaattc tcgaagaatt
     2281 cggtctcgac ctgcttgcgc cgcgcctcgg gctcggcgag cgccacgcct cgcgcgaccc
     2341 gacggtaaat gtcgtcaatg cgcgtttcgt cacccttcgc atatttttcc agcatcacgt
     2401 cgatggaaaa ctgctgcggt agaacggtga tcttcaagtc gtcttcagcc atattgggtc
     2461 ctcatatcct tttgttcgtg cagcaagcgg attgctgcat tgcatcgcag tgacgggaac
     2521 gcttcccgcc gggcgc
//
LOCUS       DATGBK010001332         3574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_247214, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001332 DATGBK010000000
VERSION     DATGBK010001332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3574
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247214"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VKJ77_18625"
     CDS             <1..228
                     /locus_tag="VKJ77_18625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HMC47340.1"
                     /translation="AITTLKDRTACLLAHHGVIAIGHDLARALWLANEVEVLAQQYLL
                     ACQLGTPPVLSDEAIDEVIEKFKGYGLRSKT"
     gene            449..1555
                     /locus_tag="VKJ77_18630"
     CDS             449..1555
                     /locus_tag="VKJ77_18630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HMC47341.1"
                     /translation="MAWNSERFDRWSTVGASTGALVLCAAAALSGCSKSETSTTASTD
                     AGASAAASAAPAAAASDAGGGKVKVGFSVSTLNNAFFVGLKSGVEKGAKAQGFDLVQT
                     NANGDAQQQVNDAINLLSQGVTALVLNPIDSKAIIPAVEKANAMGIPVFTLDRGSDGG
                     KVTSFVASDNVALGATGAKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDA
                     IAKYPDIKVVARQEGAFDQEKSLNAMTNILQKYPQIDAVFGANDDNTVGAEKAIDNAG
                     RYKPLGDKDHIMVIGADGTAQALSAIRAGKQDATISQNPIEMSAKALSFIADYSAKKS
                     VPANYAWPTLLIDKSNIDSDETKKYGLWSEQVSQ"
     gene            1652..3199
                     /locus_tag="VKJ77_18635"
     CDS             1652..3199
                     /locus_tag="VKJ77_18635"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC47342.1"
                     /translation="MNSERGSEASTANAGSTAAAAPLLRMEGIVKSFPGVKALRGVSL
                     ELQAGHVMAIVGENGAGKSSLIKTLSGAYEPDEGTIEINGQPLARGTHAAIDAGVAVI
                     YQELSLVNDMTVAENLFLGRMPSRSGLVLRKRANDMARTALAQVGLEGVSPSMRLGDL
                     PLNKRQLVEVAKALARDARILVMDEPTAALQREDIANLYAVVRRLRAAGMGIIFISHH
                     LEEVFELADSAVVMRDGATVGARPMAQWTEQDLVQAMVARNLDSFYPWEPRDYGPVML
                     EVRNLASPPVLRNASFSVRAGEIVGIAGIAGAGRTELLKAIFGALPLSGGEVLIRGQK
                     VSIGSPAQGVRNGLVYTSEDRKLEGLVLDASIEENVALSSLLALATGGFVSNTKKRKL
                     AQEASARFGVRASSVMQITGNLSGGNQQKVILGRATATQPAVIMLDEPTRGIDVGAKT
                     EIYAHMVSMARAGAAVIMVSSELPELLGMSDRVLVMYRGNIVTEIPRDQADSETVIQW
                     ATTGVGA"
     gene            3196..>3574
                     /locus_tag="VKJ77_18640"
     CDS             3196..>3574
                     /locus_tag="VKJ77_18640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HMC47343.1"
                     /translation="MTSTAANQADSEARSRRIIRQLRTGLGPLLAALILICIGLSIAS
                     PEFLTTSTLTNIMVQVSVVGIAAVGGTFVIITSGSDLSVGSLVALSGMVAATVMAGSS
                     PDNVALGIAGLCVALVVGALVGAL"
BASE COUNT          731 a          983 c         1176 g          684 t
ORIGIN      
        1 gccatcacca ccttgaagga ccgcactgcg tgtctgcttg cgcatcacgg tgtgattgcc
       61 atcggacacg atctcgctcg tgcgttgtgg ctggccaatg aagtggaggt cctcgcgcag
      121 cagtatctgc ttgcttgcca gctcgggacg ccgccggtct tgtcggacga agcaatcgac
      181 gaagtcatcg aaaaattcaa gggatatggt ttgcgcagca agacttgaag gacggatgtg
      241 ctccaatttt gcaacggaac ctttcgattt tggggatagc gtaccgtgag ttgcaaggat
      301 agcattcgac caagataggc tgtatttcgc tggactgaat atcgttgagt tctggctcat
      361 ctcatcagcc ggaagcttgt cgatcgaagt gaaagaagat gcaagggaat cacaacctgc
      421 ttttaaaact tacacaacgg agacggttat ggcgtggaat tcagaacggt ttgacagatg
      481 gtcgacggtc ggcgcatcga cgggagcgtt ggtgctttgc gcggctgccg cgctaagcgg
      541 ttgctcgaag agcgagacgt cgacaacggc atcgaccgat gcaggagcaa gcgccgcggc
      601 aagcgcggca ccggcggcag cggcatcgga tgcgggcggc ggcaaggtca aggtgggctt
      661 ttcggtttcc acgctgaaca acgcgttttt cgtcggcttg aaatccgggg tcgaaaaagg
      721 tgctaaagca caaggcttcg atctcgttca gaccaatgcc aatggcgacg cacagcaaca
      781 ggtcaatgac gccatcaact tgctaagcca gggcgtcacc gcacttgtgc tcaacccgat
      841 cgattcgaaa gcgatcatcc ccgctgtcga gaaagccaac gccatgggta tccccgtgtt
      901 cacgctggac cgtggatcgg acggcgggaa ggtgacgtcc ttcgtggcgt cagacaacgt
      961 ggcgcttggc gcaaccgggg cgaagtggat tgccgaccag ttgacgaagc gctacggttc
     1021 cgcgaagggc aacgtggtcg acctgatcgg attggtcggc acaacggcgg ctaccgatcg
     1081 cgaaaagggc ttcagcgatg caattgccaa gtatccggat atcaaggtgg tcgcccgcca
     1141 ggaaggtgcg ttcgaccagg agaagtcgct taacgcaatg acgaacatcc tgcagaagta
     1201 cccgcagatc gatgcagtgt tcggcgcgaa cgacgacaac acggtgggtg cagagaaggc
     1261 gatcgacaac gccgggcgtt acaagccgct cggtgacaag gaccacatca tggtcattgg
     1321 cgcggatggt acggcacaag cgctttccgc cattcgcgcg ggcaagcagg acgccaccat
     1381 ttcgcagaac ccgatcgaaa tgtcggccaa ggcgctgagt tttattgcgg attactccgc
     1441 caagaagtcg gtaccggcga actatgcatg gccgaccctg ctgatcgaca agagcaatat
     1501 cgactccgat gagaccaaga aatacggact ctggtccgag caggtcagtc agtaggttgc
     1561 tcatgtgcgc tcctgcacga cggggagcgc gcactcgcac ttgcatgtga atgtgcatct
     1621 gatatccagt gatattcagt gggaccggaa catgaacagt gagaggggtt cggaggcaag
     1681 caccgctaac gcgggcagca cggccgctgc agcgccgctg ttgcgcatgg aaggtatcgt
     1741 caagagcttc cccggcgtca aggcgctgcg aggtgtcagc ctcgaattgc aggcgggcca
     1801 tgtgatggcc atcgtcggtg agaacggtgc gggaaaatcg tcgttgatca agacgctttc
     1861 gggtgcctac gagccggacg aaggcacaat cgagatcaac ggacagccgc tcgcgcgcgg
     1921 tacacatgct gcgatagatg cgggtgtggc cgtgatctat caggagcttt cactcgtcaa
     1981 cgacatgacg gtggcggaga acctgtttct cggccgcatg ccgtcgcgca gcggcctggt
     2041 gttgcgcaaa cgggccaacg atatggcccg cacagcgctc gcccaagtgg gtctggaggg
     2101 cgtttcgccg tccatgcgcc tgggtgacct gcccttgaat aaacgccagc ttgtcgaggt
     2161 ggcaaaggcg ttggcgcggg acgcgcgcat tctcgtcatg gacgaaccga ccgctgcgct
     2221 gcagcgcgag gacatcgcca atctctatgc cgtggtccgg cgcttgcgtg ctgccggcat
     2281 gggcatcatc tttatctcgc atcatcttga agaggtgttt gagctcgcgg attcggccgt
     2341 cgtcatgcgc gacggtgcaa ccgtgggtgc acgtcccatg gcgcagtgga ccgagcagga
     2401 tctggtgcag gccatggtgg cccgcaacct ggattcgttt tacccgtggg agccgcgcga
     2461 ctatggtccg gtgatgctgg aagtccgcaa tctcgccagc ccgccggtgc tgcgtaacgc
     2521 cagttttagc gtacgcgcag gcgagatcgt ggggatagcg ggcattgccg gggcggggcg
     2581 caccgagttg ctcaaggcga ttttcggcgc actgccacta agtggcggag aagtgctgat
     2641 acgcggccag aaggtttcta tcggatcgcc tgcgcagggc gtgcgcaacg ggctcgtgta
     2701 cacgtccgag gatcgcaagc tcgaagggct tgtactcgat gcaagcatcg aagaaaacgt
     2761 cgcgttgtcc agcttgctcg cgctagcgac gggcggcttc gttagcaaca cgaaaaagcg
     2821 caagctcgcg caggaagcaa gcgcgcgttt tggcgtacgc gcgtcgtcgg tgatgcagat
     2881 cactggcaat ttgtcgggcg gcaatcagca gaaggtcatt ctcggccgcg cgacggcgac
     2941 gcagccggcg gtgatcatgc tggacgaacc cacacgcggt atcgatgtgg gcgcgaagac
     3001 cgagatctat gcgcatatgg tgtcgatggc gcgtgcaggc gccgccgtca tcatggtcag
     3061 ttccgagttg ccggaactgc tgggcatgtc ggaccgggtc ctggtcatgt accggggcaa
     3121 tatcgtcacc gaaattccgc gcgatcaggc agattcagaa acggtgattc agtgggctac
     3181 aacaggagta ggggcatgac ttccacggca gcgaaccagg cggattcgga agcgcgctcc
     3241 cgccgcatca tccggcaatt gcgcacgggt ctcgggccgc tgctggcagc gttgatcctg
     3301 atctgcatcg gcttgtcgat tgcgtcaccg gaattcctga ccaccagcac gctcaccaac
     3361 atcatggtgc aagtgtccgt ggtcggcatc gcggcggtcg gcggcacctt cgtgatcatc
     3421 acgtcgggca gcgacctgtc ggtcggctcg ctggtcgcgc tgagcggcat ggtcgcggcg
     3481 accgtgatgg ccggatcgag cccggacaac gtggcgcttg gtatcgcggg gctgtgcgtg
     3541 gcattggtgg tgggcgccct ggttggcgcg ctga
//
LOCUS       DATGBK010001333         2489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_85044, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001333 DATGBK010000000
VERSION     DATGBK010001333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85044"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VKJ77_18645"
     CDS             complement(<1..340)
                     /locus_tag="VKJ77_18645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011356167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47344.1"
                     /translation="MNTEARYASAQVEALPDEPASSGMFGWYKHTTPSEKRAFWSCKI
                     GYGLDAMDTQFLSFVIPTLIATWGLSKGEAGLIGTVTLLTSALGGWVAGILSDRIGRV
                     KTLQITILWFA"
     gene            complement(370..1140)
                     /locus_tag="VKJ77_18650"
     CDS             complement(370..1140)
                     /locus_tag="VKJ77_18650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydro-lyase"
                     /protein_id="HMC47345.1"
                     /translation="MPHLFRQQVRSKRFTGPTAGHCGEFAQANLAIIPSAYAEDFLRF
                     CVRNPKACPLLGVGEPGQWNVPALGRDLDIRTDVPGYNVYRDGVLCEQPDDIVELWRD
                     DLVVFAIGCSFSFEQMLARERIPLRHVDEGVNVPMYRTNIANQVAGPFGGKLVVSMRP
                     MSGAHAVRAIQITSRFPSVHGAPVHLGSPAVLGIEDLMQPDYGQPVSIHEHEIPVFWA
                     CGVTPQSAIESARLPFAIAHRPGHMLMTDIPNSSLAVL"
     gene            1712..2489
                     /locus_tag="VKJ77_18655"
                     /pseudo
     CDS             1712..2489
                     /locus_tag="VKJ77_18655"
                     /inference="COORDINATES: protein motif:HMM:NF019874.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
BASE COUNT          504 a          712 c          782 g          491 t
ORIGIN      
        1 acgcgaacca aaggatggtg atctgcagcg tcttcacgcg gccgatgcga tccgacagaa
       61 tgcccgctac ccagccgccg agtgccgagg tcaacagtgt caccgtgccg atcaaaccag
      121 cttcgccctt gctcaggccc cacgttgcaa tcagggtagg gatcacgaag ctcaggaact
      181 gcgtgtccat ggcgtcgagt ccatagccta tcttgcagct ccagaacgca cgcttctcgc
      241 ttggggtcgt gtgtttgtac cagccgaaca tgccgctgct ggcgggttcg tcaggtagcg
      301 cttcaacttg cgcgctcgca tagcgtgctt cggtattcat gggtttctcc ggggttcgtg
      361 agcgtgcgct cagagcacag cgagcgatga gttggggata tcggtcatga gcatgtggcc
      421 cggccgatgt gcaatggcaa acggcaggcg cgcgctctca atagcgcttt gcggcgtcac
      481 accgcaggcc cagaacacgg gtatttcgtg ctcgtgaatg gaaaccggtt gaccgtagtc
      541 gggctgcatc aggtcttcaa taccgagcac cgccgggctg ccaagatgca ctggcgcacc
      601 gtgcaccgaa gggaaccggc tcgtgatctg gatggcccgt accgcatgcg caccactcat
      661 gggacgcatg gaaacgacca gcttgccgcc aaacggccca gccacctgat ttgcgatatt
      721 cgtccgatac atgggcacgt tgacaccctc gtcaacgtgt cgcaacggga tgcgttcgcg
      781 ggccagcatc tgctcgaatg aaaacgagca gccgatggcg aacaccacca gatcgtcgcg
      841 ccagagttcg acgatatcgt cgggctgctc gcacagcacg ccgtcgcgat acacgttgta
      901 gccgggaacg tcggtgcgga tatcgaggtc gcggcccagc gccgggacgt tccactggcc
      961 cggttcaccc acgcccagca gcggacacgc cttcgggtta cgcacgcaaa aacgcaggaa
     1021 atcctctgcg taggcgcttg ggatgatggc gaggttggct tgcgcgaact cgccgcagtg
     1081 accggcggtc ggaccggtga aacgcttgct gcggacttgc tgacggaaaa gatgcggcat
     1141 ggttcgggtc cctcacgaat gcaatgaaat ggcgatgtag caggtgatgg gatgcaggtt
     1201 aggggcgaaa aaaaagcggc gccagcgagt tattccgctc gtaggtgtta aggttttctt
     1261 aacagtttcg tgcgggtttt cacgtagcag gcctggcgtt gatagccgga cgaatgggcg
     1321 ctgagtgaag ctacatgcct ttttacacgg tgttttaacg cgcagacgcc aacgcgcgga
     1381 agcgcatcgt ctgctcagaa acaccctgca gaagagatcg attacgcaag cgcatttttt
     1441 ttggcggagt taataattcc tccgggctgc cgttaaagcg aaacagcggg ctcgttctcc
     1501 gcgcctctcc tgaccgcagt tcctttcaac tggaaaacaa aaaatgaacc gtctgtcctt
     1561 gcgccagaag ttatggatgc cgctgattct ttcgtggttc ggccttctta cgctgactgt
     1621 ctggcacgca taccagacgc gtgacctgca gttgtcggag cgtcaccgcg atctgggcga
     1681 tattgtcgcg atgtcttttt caatcgccgc cggcctcgac aagctggcgc agagcggcaa
     1741 gatgtcggtc gacgccgcga agcaggaagc gatcgcgcgg atcggcgacc tgcggtatga
     1801 cggcggcggt tacgtgactg tcgtcggggc gaattcggtc atgatcatgc atcccatcat
     1861 cccgaagctg gacggcaagg acatgtcgga ctggaaggac gcaaagggca atgagctcta
     1921 caaggctatc gccgcggcag gcagttctgc ggagggcgca gggtttctcg aatactggtg
     1981 gccgaagccg ggcgagaccg aaccgagttc gaagctcggt tatacgaagc gttataagcc
     2041 gtgggactgg gacatgattg ccggtacgta tcaggacgat atccaggccg cgttctatcg
     2101 cacgctgctg cattcgttcc tgatgctgtt cgcactcggc gcggctattt cgctgtttgc
     2161 gtcgctggca atcaagagcg tgcgccgttc gcttggtggt gaacctgctg ccgctgcaca
     2221 actcgcgcgg cagattgcat cgggcgacct gacgggacgt atcgacgtga cggcgggcga
     2281 tacgcagagt gttatttcag cgattgccca tacccgcgac agcctggccg gcacggtatc
     2341 gcgcgtgaag gacgccgccg acgccatcaa gcttgctgca gccgaaattg ccagcggcaa
     2401 cgcagacctg tcgagccgta ctgagcaaca ggcggcgtcg ctgcaggaga ccgcggcagc
     2461 catggacgag atcacgtcca cggtcaggg
//
LOCUS       DATGBK010001334         1806 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_131300, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001334 DATGBK010000000
VERSION     DATGBK010001334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131300"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..670
                     /locus_tag="VKJ77_18660"
     CDS             <1..670
                     /locus_tag="VKJ77_18660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cation/H(+) antiporter"
                     /protein_id="HMC47346.1"
                     /translation="AVSALTTLFTPYLIKAADPITRRIARSMPVPVANTFGLYSQWLA
                     SLSPDTGGPTLFSMTRRIVVQIAVNLALVAAIFLTASYAAPFATEYLSRWLPTNDAQR
                     VALWSVALLVSMPFLVAVYRKLGSLALMLAEVSVQPAKAGRFTRALRSAISGLIPILA
                     MFGVFLLVTVLSGGILPPFGLMIAVLVCAALLLTVLWRWCVKIHATMQIALRETFEEP
                     RDHP"
     gene            790..>1806
                     /locus_tag="VKJ77_18665"
     CDS             790..>1806
                     /locus_tag="VKJ77_18665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180855.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HMC47347.1"
                     /translation="MSENKSNESNGSIAPGTPGTGSPAADSSGSIPGSHTPAVPPASP
                     SKSADIPPAAAQPGPKETAAERASTDSPDSASTVEPIDTAKAQRDDAAEARAAAAKAT
                     ATQEAAMSGSAANKTVDAKSSLAAQVETATQAEASLAAELESATEAQAAEAEAVNATE
                     SPTGSVAPKPASSLPPEFTAAPDFGTFRPPPMPPDSADKKAPPAYLRNSDSAWSVFGR
                     VIKARARQIFDRAGQRITQRTLRIGVSARIFHPEPGAKGLRGKTLQYLEESIAHWVMS
                     RDVLVFMIPTVGHQGMLHPSNIRLRDYAKQLDGLLLQGGADVSPQSYTEAATRHEWPG
                     DRVRD"
BASE COUNT          339 a          571 c          550 g          346 t
ORIGIN      
        1 agcggtttcc gcgttgacca cgctgttcac gccgtatctg atcaaggccg ctgatccaat
       61 cacgcgccgc atcgcccgct cgatgcccgt gcccgttgcg aataccttcg gcctgtattc
      121 gcaatggctc gcgagccttt cccccgacac cggtggcccg acgctattca gcatgacgcg
      181 ccggatcgtg gtgcagatcg cggtgaatct cgcgctggtg gcagccattt tcctcactgc
      241 ttcttacgcg gcgccgtttg ccaccgaata tctgtcgcgc tggttgccca ccaacgatgc
      301 ccagcgtgtc gcgctctgga gcgtggcgtt gctggtgtcc atgccgttcc tggttgcggt
      361 gtatcgcaaa ttggggtcgc tcgcgctgat gctcgccgaa gtgagcgtgc agcccgcgaa
      421 ggcgggacgt ttcacgcgtg cattacgatc ggccatttcc ggcctgatcc cgatcctcgc
      481 gatgttcggt gttttcctgc tggtgacggt gctctcgggc ggcatcctgc cgccgttcgg
      541 cttgatgatc gcagtgctcg tctgcgcggc gttgttgctc acggtattgt ggcgctggtg
      601 cgtcaaaatc cacgcaacca tgcagattgc gcttcgagaa acattcgaag agccgagaga
      661 tcatccttga gcatgaaacc tttgttttcc ccgataatgt gagcaattgt ttgatggttt
      721 gccgcccccg gaccagaggc ggataattaa actctgacca ttctcacagc gcctcgcgcc
      781 tatattggaa tgagcgaaaa caagtcaaac gagtcaaatg gatcgatagc gccgggtacg
      841 cccggcactg gttctcccgc agccgattct tcgggttcca tcccgggcag tcatacgccg
      901 gcggtccctc ccgcgtcacc ctcaaagagc gctgatattc cccctgccgc cgcgcagcct
      961 ggtccgaaag agacggcggc cgaacgggcg tcgacggatt cgcccgacag cgcgtcgacg
     1021 gtagaaccca tcgataccgc caaagcgcaa cgcgacgatg cagccgaggc ccgcgcagcg
     1081 gcggcgaagg ccacggccac gcaggaagct gccatgtccg gatccgctgc gaacaaaacg
     1141 gtcgatgcaa agtcaagcct tgcagcgcag gtcgagaccg caacacaagc ggaggccagt
     1201 ctcgcggcag agcttgaaag tgccactgag gcgcaagccg cagaagccga agccgtgaac
     1261 gcaacagaaa gcccgacagg aagcgtcgcg cctaagccgg cttccagcct gccgccggaa
     1321 tttacggcgg caccggattt cggcacattc cgtccgccgc ccatgccacc cgactcagcg
     1381 gataagaagg cgccgccagc gtatctgcgt aacagcgatt ccgcctggtc ggtgttcggc
     1441 cgcgtgatca aggcgcgtgc gcgtcaaatc ttcgaccgtg ccggccagcg gatcacgcag
     1501 cggacattga ggattggcgt gtcggcgcgg atttttcatc ctgaaccggg tgcgaaagga
     1561 ctgcgcggca agacgttgca gtatctggag gaatcgattg cgcattgggt gatgtcgcgc
     1621 gacgtgctgg tcttcatgat tcccaccgtc ggccatcagg gcatgctgca tccgagcaac
     1681 atccggttgc gcgactacgc gaagcagcta gatggcctgc tgctgcaagg tggcgctgac
     1741 gtatcgccgc aatcctatac ggaagcggcc acgcgccacg aatggcccgg cgaccgcgtg
     1801 cgggac
//
LOCUS       DATGBK010001335         2668 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_224489, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001335 DATGBK010000000
VERSION     DATGBK010001335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224489"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2668
                     /locus_tag="VKJ77_18670"
     CDS             <1..>2668
                     /locus_tag="VKJ77_18670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HMC47348.1"
                     /translation="TRDRYRRALEQLARGSAHSENEVARAAVLNAQRADAGPSVETAD
                     PDPRRREPGYYLIGQGRRAFERKLGFRAPMKDWLVRGNAAVGVSGYLATVALTAVVLL
                     ATALLAVHLAGASGWTFLPLTFFGIFISTDGAISLVNRAVTDEFGPAVLPGLELRDGV
                     PAEFRTIVVVPTLLTSSAAVDELIERLEIHHLASPDGDIRFALLSDWTDSLTESANDD
                     EALLGEAIAGIDRLNEQYESAVDGPRFILLHRRRVWNEGEGKWIGWERKRGKLHELNR
                     LLRGASDTTFLPIGGKLPQVPPGVRFVITLDTDTRLPIGSAKRLIGKMAHPLNRPKLD
                     PVSRRVVDGYGVLQPRVTPSLPTMRDGSIYQRVFTSPTGIDPYAAAVSDVYQDLFQEG
                     SYSGKGIYEVDAFETALAGRIAENSVLSHDLLEGIFARAGLVSDVEVFEDFPSRYDVA
                     ASRQHRWARGDWQLLPWIVGSGVATIPLLGRWKLLDNLRRTMSAPASFLALLTGWLLL
                     PIRADLLWCGFVFLPLLMNAFLPLVAEIVPRRSGISTDSHLRAFRIDLRIAVLQFGLH
                     VILLAHQTWLMADAIVRTLSRLYRRQGLLEWMTAAAAGSDRVPGFAGFYRRMAGAVAL
                     AALGILVLAYSDNDAWLIATPLIGAWVLSPGIALWVSRAPLSDQPSLLEGEQDSLRLT
                     ARRTWHFFETFVTAEDHMLPPDNFQEDPRPVLAHRTSPTNLGLYLLAVLAARDFGWLG
                     LTSAVDRLEETLRTMSRMERFRGHFFNWYDTRDLRPLDPKYVSSVDSGNLAGHLIVLR
                     SACREMAAASVLGPEMFTGITDTVKLAQLAVAASDAGRSEQLERALNALAASLKASFG
                     SAADYAARLGEARRQAELLPDLARALAVDAEGR"
BASE COUNT          456 a          790 c          843 g          579 t
ORIGIN      
        1 caacccgtga tcgctatcgc agagcgctcg aacagctggc gcgcggctcg gcgcactcgg
       61 aaaacgaagt agcccgagcg gcagtcctca acgcgcagcg cgccgacgcc ggcccgtcgg
      121 ttgaaacggc ggatccggac ccacgacgtc gagagcccgg ttactatctg attggacagg
      181 ggcggcgggc gttcgaacga aaactcggct ttcgagcgcc gatgaaggac tggcttgtcc
      241 gagggaatgc agcagtgggc gtttccggct atttggcgac ggtagcactt accgcggtgg
      301 ttcttcttgc gacggcgttg ctcgcggtcc acctggccgg tgcaagtggt tggacttttc
      361 tgccgctgac gttctttgga atatttattt ccaccgatgg cgccatctcg ctggtgaacc
      421 gagccgtgac cgatgagttc gggcccgctg tgctcccagg gcttgaactt cgcgacggtg
      481 ttccagctga attccgcact attgtcgtgg tgccgacact gctgacgtcc agcgctgctg
      541 tcgatgaact tatcgagcga ttggaaatcc atcatctcgc gagcccggac ggagacatcc
      601 gttttgccct gttatcggac tggacggact cgctcaccga aagcgccaat gatgatgagg
      661 cgcttttggg cgaggcgatc gccggtattg atcgtctcaa cgaacaatat gagtcggcgg
      721 tggacggacc gcgttttatc ctcctgcatc gtcggcgggt ttggaacgaa ggcgagggca
      781 agtggatcgg atgggaacgc aagcgcggga aactgcatga actgaaccgg ctgcttcgag
      841 gcgccagcga cacgactttt ctgccgatcg gtgggaagct tccgcaggtg cccccgggcg
      901 tccgcttcgt tattacgcta gacaccgata cccggcttcc cattggatcg gcaaagcgcc
      961 tgatcgggaa aatggcgcat cctctcaatc ggccaaagct cgacccggta tcgcgccggg
     1021 tggtcgacgg ctacggggtg ctgcaaccgc gagtgacacc atcccttccg accatgcgag
     1081 atgggtcgat ttatcagcgc gttttcacga gtccgaccgg catcgacccc tacgctgcag
     1141 cggtttccga tgtctaccag gacctgttcc aggaaggctc ctacagcggc aaaggcatct
     1201 acgaggtgga tgccttcgaa acggcgttag ccggtcgcat tgcggaaaat agtgtgctca
     1261 gtcacgactt gttggagggc atttttgctc gggcggggct tgtttccgat gtcgaggtgt
     1321 tcgaagattt tccttcgcgc tacgatgttg ctgcgtcgcg ccagcaccga tgggcgcgcg
     1381 gcgactggca attgcttcct tggatcgtcg gcagcggtgt ggcgactatt ccactgctgg
     1441 ggcgctggaa actactcgat aatcttcgcc gtactatgtc ggcgccggca agttttctcg
     1501 cgctcttgac cggctggctt ctgctgccca tccgtgccga cttgctctgg tgcggctttg
     1561 tttttcttcc cttactgatg aacgctttcc tgccgctggt cgcggaaatc gttccgcggc
     1621 gatccggaat atcgaccgac agtcacctcc gcgcatttcg catagatctg cgcattgccg
     1681 tgttgcagtt cggcctgcac gtgatcctgc tggcgcacca gacctggctg atggccgacg
     1741 ccatcgtgcg gaccttgtcg agactttatc ggcgccaggg gttgctggaa tggatgaccg
     1801 cagcagcggc gggctccgat cgggtgcccg gctttgccgg cttttaccgg cgtatggccg
     1861 gcgcggtcgc actggccgcg ctcggtatac ttgtgctggc ttatagcgat aacgacgcgt
     1921 ggctaatcgc gacgcccttg atcggcgcct gggtgctgtc accgggcatc gctttgtggg
     1981 tgagccgggc gccgctctcc gaccagccgt cgctattgga gggagagcag gacagcctgc
     2041 gtctcacggc gcggcgtacc tggcatttct ttgaaacatt cgtgacagcg gaggaccata
     2101 tgcttcctcc ggacaatttt caggaggacc cgcggccggt cctggcccat cggacctcgc
     2161 cgacgaacct cggcctctac cttctcgcgg tgcttgcggc gcgagatttt ggctggctcg
     2221 gcctcacgtc ggcggtcgac cgactggaag agacactacg caccatgagc agaatggagc
     2281 gcttccgggg ccatttcttc aattggtacg atacgcgtga ccttcgcccg ctcgatccca
     2341 aatacgtctc gtcagtcgac agtgggaatc ttgccggcca tctgatcgtc cttcgaagtg
     2401 cctgccggga gatggcggca gcatccgtgc tcggtccgga aatgttcacc ggaatcacag
     2461 atacggtgaa acttgcgcaa cttgctgttg cagcttcaga tgcgggccgc agcgaacaac
     2521 tcgaacgggc gctcaatgcg cttgcggcgt cgttgaaagc ttcgtttggc tcagcggcgg
     2581 attacgccgc gcgcttgggg gaagcacgac gccaggctga actgctgccc gacctggcgc
     2641 gagcgctcgc tgtggatgcg gaaggccg
//
LOCUS       DATGBK010001336         2056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_15620, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001336 DATGBK010000000
VERSION     DATGBK010001336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15620"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..238
                     /locus_tag="VKJ77_18675"
                     /pseudo
     CDS             1..238
                     /locus_tag="VKJ77_18675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492931.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
     gene            354..1646
                     /locus_tag="VKJ77_18680"
     CDS             354..1646
                     /locus_tag="VKJ77_18680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47349.1"
                     /translation="MSSHAMSANESKFKSVFRVVSGNFLEMYDFMVYGYYASAIAKTY
                     FPSGDEFASLMLALSVFGAGFLMRPIGAIVLGAYIDHHGRRKGLILTLAMMAVGTLLV
                     AVIPGYATIGVLAPIIVLLGRLLQGFSAGVELGGVSVYLSEIATKGNKGFYCSWQSGS
                     QQVAVVFAALIGVGMSQILPPDQMTAWGWRVPFIIGCLIVPFLFIIRRSLQETEEFLA
                     RKHRPEMREIMKSMISNWGIVLAGMGMVIMTTVSFYMITAYTPTFGKEVLKLSSIDAL
                     VVTVFIGLSNLVWLPLSGAISDRIGRRPVLLFFTILTILTAYPAVQWLVADPSFLRLL
                     GVEMWLSFLYGSYNGAMVVALTEVMPVEVRTTGFSLAYSLATTIGGFTPAISTYLIHT
                     TGNKAAPGAWMSVAAVCGLIATLVLYRSTQARSQYKTA"
     gene            complement(1728..>2056)
                     /locus_tag="VKJ77_18685"
     CDS             complement(1728..>2056)
                     /locus_tag="VKJ77_18685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HMC47350.1"
                     /translation="TDEERALLDTHPRARFIQRLEGKLEDFADTAAIVDRLDGVVSVD
                     TAVAHLTGALGKPLWLMLPFAADWRWGIDTATTPWYPKARLFRQPTPGAWDDVVGRVA
                     TEISAS"
BASE COUNT          360 a          602 c          618 g          476 t
ORIGIN      
        1 tcgatcccat tgaactcggc gaaagcggct cgttgttcct gacgcgtccg cggttggccg
       61 acatctcgcc gatgcgcaaa ccgtgcagcg ccgcgcagac gacgtgttcg ccgcgttagc
      121 cgacggctcg ctcagcatag ccatcagcgc tcgctacacg ttcgatcagg ttgaggaggc
      181 gcacgccgag cttgaggcgc ggcgccaggt gggcaagtcg gtatttatga ttggataggt
      241 accatcaatg cgtccgtcgc agtcgcgccg gtcgttgtta attgttgtcg aatgcagtga
      301 ttgttgtcgc catcgcgcgc cggcacaccg catcctttga gaaggtcaag ttcatgtcct
      361 cacacgctat gtccgcaaac gagtcgaaat tcaagtcggt atttcgggtt gtcagcggca
      421 atttcctcga aatgtacgac ttcatggtct acggctatta cgcctcggcc attgccaaga
      481 cctacttccc aagcggtgac gaattcgcgt cgctgatgct cgcgttgtcc gtgttcggcg
      541 cagggttcct gatgcgtccg atcggcgcaa tcgtgctagg tgcgtacatc gatcatcacg
      601 gacgacgcaa gggcctgatc cttacgctgg cgatgatggc cgtcggcacg ttgctggtcg
      661 cggtgattcc ggggtacgcg accatcggcg tgttggctcc gatcatcgta ttgcttgggc
      721 gtctgctgca gggcttctcg gccggcgtgg aactgggtgg tgtgtcggtg tatctgtccg
      781 aaatcgcgac caagggcaac aagggctttt attgctcttg gcagtccggc agccagcaag
      841 tagcggtggt gttcgctgcg ctcatcggcg ttggtatgag ccagattttg ccgcctgacc
      901 agatgaccgc gtggggatgg cgcgtgccgt ttatcatcgg ctgcctgatc gtgccgttcc
      961 tgttcatcat tcgccgttcg ttgcaggaaa ccgaggaatt cctcgcgcgc aaacatcgtc
     1021 cggaaatgcg cgagatcatg aagtcgatga tctccaactg gggcatcgtg ctcgccggca
     1081 tgggcatggt catcatgacc acggtgtcgt tctacatgat caccgcctac acgccgacct
     1141 tcggcaagga agtgctcaag ctttcgtcca tcgatgcact ggtggtgacg gtgttcatcg
     1201 gcttgtcgaa tcttgtgtgg ctgccacttt ccggtgcgat ttccgaccgc atcggacgcc
     1261 gcccggtgct gctgttcttc accatcctga ccatcctgac ggcgtatccg gccgtgcagt
     1321 ggctcgtcgc ggatccgtcg ttcctgcgct tgctcggcgt ggagatgtgg ctttcgttcc
     1381 tctacggcag ctataacggc gcgatggtcg tggcgctcac cgaagtcatg ccggttgaag
     1441 tccgcacgac aggtttctcg ctggcatata gcttggcgac gaccatcggt gggttcacgc
     1501 ctgccatctc cacgtacttg attcacacga ccggcaacaa ggcggcaccg ggcgcgtgga
     1561 tgtccgtagc cgcggtctgc ggtttgatcg cgacgctggt cctgtatcga tccacacaag
     1621 cgcggagtca atacaagacg gcgtgatatt tgccggcttt gaaactaaaa atccctcgct
     1681 aatggcgagg gatttttgtt tgtgcgttca acgcttctga acctgtacta cgaagcgctt
     1741 atctcggtcg caacgcgtcc gaccacatcg tcccatgcgc cgggtgtcgg ttgccggaac
     1801 aagcgtgctt tcgggtacca cggagtcgtc gcggtatcga taccccagcg ccagtcagcc
     1861 gcgaacggca gcatcagcca taacggtttt cctaacgcgc cggtcaggtg agcgacggcg
     1921 gtatcgacgg ataccacgcc gtccagccga tccacgattg cagccgtatc cgcgaaatct
     1981 tcgagcttgc cttccagccg ctggataaag cgggcgcgcg gatgagtgtc cagcaacgcg
     2041 cgctcttcgt cagtca
//
LOCUS       DATGBK010001337         2282 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_15645, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001337 DATGBK010000000
VERSION     DATGBK010001337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15645"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..393
                     /locus_tag="VKJ77_18690"
     CDS             <1..393
                     /locus_tag="VKJ77_18690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017776990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HMC47351.1"
                     /translation="PGILVANPPYGERIEVRGRGPRGELREPKNRGHDEDEDAFIRAQ
                     PDPADQEFFISFGNAMKQRFPGWRAYVLTSDRKLPGMLRLRESTKTPLFNGALECRLF
                     RFDMIAGSVRNRPAAVEPAADQAPDATE"
     gene            424..1830
                     /locus_tag="VKJ77_18695"
     CDS             424..1830
                     /locus_tag="VKJ77_18695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P N-terminal domain-containing
                     protein"
                     /protein_id="HMC47352.1"
                     /translation="MNSSTEAQSLLAIDVYRSRRDRVLAALRESGGGVAIIPTAREVM
                     RNRDADYPFRHDSYFYYLTGFTEPEATLVLNASADAADPAAILFCREKNVERETWEGF
                     RYGPEGARLAFGFDAAFPIDQLDTEMPRLLADNPALHYALGASAEFDAQVRSWLAAVR
                     AQSRIGVKAPTKAIDLLPVLDEMRLIKDAHELAIMRRAGTISAEAHRRAMQTCRPGMH
                     EYEIEAELLYTFRRRGAQAPAYGTIIAAGANACTLHYPAGNTIVREGDLILIDAACEL
                     DGYASDITRTFPASGRFTSAQREIYDIVLAAQYAAVDATREGVSFDAPHEAAVRVLAQ
                     GLLDTGIIDRNKFATVDDVIAERAYQRFYMHRTSHWLGMDVHDAGDYRDAHAQLDDQG
                     ARPWRTLKAGMTLTIEPGLYIRAAEDVPERYANIGIRIEDDAIVTADGCELTTREVPV
                     DADESEALMRDAQTPDAN"
     gene            1820..>2282
                     /locus_tag="VKJ77_18700"
     CDS             1820..>2282
                     /locus_tag="VKJ77_18700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HMC47353.1"
                     /translation="MQIETAETIGHAPPADYHFDIAIVGAGPVGLALAGWLAKRSATS
                     RFSVALIDAREPGAASADPRAIAVSHGSRAMLESSLGFPADATPIKRIHVSQRGQFGR
                     TLIDHDEHGLPALGYVVRYGSLVTTLAQAVSKTGVHWFTETTASTPLHDHEG"
BASE COUNT          449 a          745 c          703 g          385 t
ORIGIN      
        1 cccgggatcc tggtcgcgaa tccgccgtac ggtgaacgga tcgaggtgcg cggacgcggc
       61 ccgcgcggcg aacttcgcga accgaagaac cgtggtcacg atgaggacga ggacgcgttc
      121 atccgcgcgc aacccgatcc cgccgaccag gagtttttta tctcgttcgg caacgcgatg
      181 aaacagcggt ttcctggctg gcgcgcgtat gtgctgacat cggatcgaaa actgccgggc
      241 atgctgcgac tgcgtgaatc gacgaaaacg ccgcttttta acggcgcgct cgaatgccgg
      301 ttgttccgct tcgacatgat cgccggcagc gtgcgcaatc ggccggcagc agtggaaccc
      361 gccgccgatc aagcgcctga cgcgacggag taaaggatcc taaaccggcg ctacaatcgc
      421 tgaatgaact catcgactga agcccaatcc ttattagcca tcgacgtcta tcgcagccgc
      481 cgtgaccgcg tcctcgcggc gctgcgggaa tcgggcggcg gcgtggcaat cattccgact
      541 gcgcgtgaag tcatgcgcaa ccgcgacgct gactatccgt tccgccacga cagctacttc
      601 tattacctga ctggcttcac ggaaccggaa gcaacgttgg tcctcaacgc cagcgccgac
      661 gccgccgatc ccgccgccat cctgttctgc cgcgagaaaa acgtcgagcg cgaaacctgg
      721 gaaggtttcc gctacggccc tgaaggcgca cgcctcgcgt ttggtttcga cgcggcgttc
      781 cccatcgatc aactcgacac ggaaatgccg cgcctgctag ccgacaaccc cgcgctgcac
      841 tacgcgctcg gcgcctccgc tgagttcgac gcgcaggttc gcagttggct cgcggcggtt
      901 cgggcacaga gcaggatcgg cgtgaaagcg ccaacgaaag cgatcgattt gctgcctgtg
      961 ctcgacgaaa tgcgcctcat caaggacgcg cacgaactcg cgatcatgcg gcgcgcaggc
     1021 acgatctcgg ccgaagcgca ccggcgcgcg atgcaaacct gccgccccgg catgcacgaa
     1081 tacgagatcg aagccgagct gctctacacg ttccgccgac gcggcgctca agcgcccgca
     1141 tacggcacga tcatcgcggc cggcgcgaat gcctgcacgc tgcactaccc cgcaggcaac
     1201 acgatcgtgc gcgagggcga cctgatcctg atcgatgccg cgtgcgagct cgacggttac
     1261 gcgtccgaca tcacgcgcac gtttccggcg agcgggcggt tcacatcggc gcaaagggaa
     1321 atctacgaca tcgtgctggc cgcgcaatat gccgccgtcg atgcaacccg tgagggcgtc
     1381 agtttcgacg cgccgcacga agctgccgtc cgtgtattgg cgcagggttt gctggacacg
     1441 gggatcatcg accgcaacaa gtttgcaacc gtggacgatg tcatcgccga gcgggcttat
     1501 cagcgtttct acatgcatcg gacaagccac tggctcggca tggacgtgca cgatgcaggc
     1561 gattatcgcg acgcccatgc gcaactcgac gaccagggcg cacgcccgtg gcgcacgttg
     1621 aaggcgggca tgacgctgac catcgagccg ggtttgtaca ttcgcgcggc cgaagacgtg
     1681 cccgaacggt atgcgaacat cggtatccgg attgaggatg acgccatcgt cacagccgat
     1741 ggctgcgaat tgacgacgcg cgaagtgccg gtggatgccg acgaaagcga agccttgatg
     1801 cgcgacgcgc aaacgccaga tgcaaattga aaccgcggaa actatcggcc atgcaccgcc
     1861 tgccgattat cacttcgata tcgccatcgt cggtgcgggt ccggttgggc tcgcgctcgc
     1921 cggctggctg gccaaacgaa gcgcaacatc gcgcttctcg gtcgcgttga ttgatgcacg
     1981 cgagcccggg gcggcgtcgg ctgatccgcg tgccatcgcg gtgtcgcacg gcagccgcgc
     2041 gatgctcgaa tcgtcgctcg gttttcccgc cgatgccacg ccaatcaaac gcattcacgt
     2101 ttcgcaacgt gggcagttcg gccgcacgct gatcgaccac gatgaacacg gtttgcccgc
     2161 gctaggctac gtcgtgcgct atggctcgct ggttacaacg ctcgcgcaag ctgtcagcaa
     2221 aaccggcgtg cactggttca cggaaaccac ggcatcgaca cctctacacg atcacgaggg
     2281 cg
//
LOCUS       DATGBK010001338         1525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_85101, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001338 DATGBK010000000
VERSION     DATGBK010001338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85101"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VKJ77_18705"
     CDS             complement(<1..212)
                     /locus_tag="VKJ77_18705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkanesulfonate monooxygenase"
                     /protein_id="HMC47354.1"
                     /translation="MSVEFIGYVSHQESSEIHLPQGPAVNPPYIAAVAQAHEYGGFDR
                     VLIAHSSASPDGFQIASFVAQQTKRLG"
     gene            complement(225..1442)
                     /locus_tag="VKJ77_18710"
     CDS             complement(225..1442)
                     /locus_tag="VKJ77_18710"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018422539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC47355.1"
                     /translation="MTVRHPPAAVQDPIALDALADLDSTTADQWLAALTQDFSASAGA
                     LDRDAIFPHDNLACLRSAGLLALTVPQTLGGRQATLPQVLKVVRAVARGEPSTALILV
                     MQCLYHLRLQANPNWPQALKEQVARDAVENGALINSLRVEPELGSPSRGGLPGTIGRL
                     TDSGDAWILNGSKIYSTGSPGLTWFAVWGRTDETSPRVGTFLVHRDTPGIRFGEPWNH
                     LGMRATGSHEVIFENVRVPAAHAVDLNPPEIAASGMDPLTTLWMNVLLSSIYDAVARS
                     ARDWFASWATDRKPANLGAPLSSLGSFQQTLGRIDALLLNNRVLLDAGSHGNIPLHEA
                     PAIKYLVTQNAITAVELAVEASGNPGLSRNNALERHHRDVLCSRIHTPQNDALLSAFG
                     RTGFASHQANSSN"
BASE COUNT          290 a          449 c          497 g          289 t
ORIGIN      
        1 cccaaacgct tggtctgttg cgcgacgaac gacgcgatct ggaagccgtc cggcgacgcg
       61 cttgaatgag cgatcagcac acgatcgaaa ccgccatatt catgcgcctg cgcgacagcg
      121 gcaatgtacg gcggattgac cgcgggacct tgcggcaagt ggatttcgct tgattcctga
      181 tggctcacat agccgatgaa ttcaacgctc atagtggtgc tccctcaatt agaagagttg
      241 gcttggtgcg aggcgaatcc ggtgcgtccg aatgcgctga gcagcgcgtc gttttgcggc
      301 gtatgaatgc gcgagcacag cacgtcgcga tgatggcgtt cgagcgcatt gttgcggctc
      361 agccccggat tgccgcttgc ttcgaccgcg agttcaacgg cggtgatcgc gttctgcgtc
      421 acgaggtatt tgatggccgg tgcttcatgc agcggaatgt tgccgtgcga accggcgtcc
      481 agcagcacac ggttgttgag cagcaatgca tcgatacggc caagcgtctg ctggaaactg
      541 cccaggctcg acagcggcgc acccaggttg gcgggtttgc gatccgtagc ccatgatgca
      601 aaccagtcgc gcgcagaccg ggcgacggcg tcgtagatcg acgaaagcag cacgttcatc
      661 cacagggtgg taagcgggtc catgccactc gcagcgatct cgggaggatt caggtcgact
      721 gcatgagcgg cagggacacg cacgttctcg aatatcactt cgtgactgcc ggttgcacgc
      781 atgccgaggt ggttccacgg ctcgccgaac cgaatgccgg gtgtgtcgcg gtgcacgagg
      841 aacgtcccga cccgcggcga ggtctcgtcc gtacggcccc acaccgcgaa ccatgtcagg
      901 cccggactgc cggtcgaata gatcttgctg ccgttgagaa tccacgcgtc gccgctatcg
      961 gtcagacgac cgatcgtgcc gggcaaaccg ccgcgcgagg gcgaacccaa ctcgggctca
     1021 acacgcagcg agttgatgag cgcgccgttt tccacggcat cgcgcgctac ctgttctttc
     1081 aacgcttgcg gccagtttgg attggcctgc aggcgcagat gataaagaca ctgcatcacg
     1141 aggatcagtg ccgtcgacgg ttcgccgcgt gcaaccgcgc gtaccacctt caggacttgc
     1201 gggagcgtcg cttgccggcc gccgagcgtc tgcggtaccg tcaacgcgag caagccggcg
     1261 cttctcaaac aggcgagatt atcgtgggga aagatcgcat cacgatccag cgctccggcg
     1321 ctcgccgaga aatcctgagt gagcgcggcg agccattgat cggcggtggt gctgtcgaga
     1381 tcggcgaggg cgtcgagcgc aatcgggtcc tgcacggcag cgggtggatg ccgtacggtc
     1441 atcggaaggt ccgttatcta cgagtgttaa tgcgcggtga actgggcgtc gaaactcggt
     1501 gttacgtcga gcgtcgtctt gatca
//
LOCUS       DATGBK010001339         4813 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_154591, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001339 DATGBK010000000
VERSION     DATGBK010001339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4813
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154591"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..946
                     /locus_tag="VKJ77_18715"
     CDS             2..946
                     /locus_tag="VKJ77_18715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HMC47356.1"
                     /translation="MPTGDNWERAALERIALAAIDEQRAARRWRIFFRFVFLAILAIA
                     VWSAFDFTSDKVAKTQRHTALVELEGEIAANSDASSDNVNAALDSAFEDDGTAAVILR
                     CNSPGGSPVQAGIINREITRLRAKYPSKPLYVVVGDMCASGGYYAAAAADKIYVDKAS
                     IVGSIGVLMDGFGFTGLMDKLGVQRRLHTSGANKGAFDPFSPETPGMDAHAQEMLDQI
                     HQQFIDAVKQGRGNRLKESPDVFSGMFWTGQKSVELGLADGFGDADYVAREIVKQPDL
                     VDYTQKESIGERVARKFGAAVGNASMHALMMGGKMQLK"
     gene            complement(1050..1769)
                     /locus_tag="VKJ77_18720"
     CDS             complement(1050..1769)
                     /locus_tag="VKJ77_18720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007741744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HMC47357.1"
                     /translation="MSGILYLIPNTLGDGDSAALADVLPEPVRARAAALQYYIGENAK
                     TTRVFLKKVGTERPIQEIEIRELNVNTPPGEVDKLLKPILAGTDAGLVSEAGCPAVAD
                     PGALLVRRAHERGVKVVPFVGPSSILLALMASGMNGQSFAFNGYLPVDAAERGKRLRE
                     LEALSRKANQTQIFIETPYRNRALLDTLLATCAPSTLVCVAVDLTLPAETIVTRTVSE
                     WKKKAAPELHKRPAIFLLLGA"
     gene            complement(1766..2380)
                     /locus_tag="VKJ77_18725"
     CDS             complement(1766..2380)
                     /locus_tag="VKJ77_18725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf-like protein"
                     /protein_id="HMC47358.1"
                     /translation="MSDVSTKPRLILASSSRYRRELLERLRIPFDVITPDIDETPLGG
                     ETPEATAVRLSIAKARAAAARVSDASGALVIGSDQVATCDGRQIGKPGTHDNARAQLQ
                     SMRGKSVEFHSALCLFDSRSDQIQSADIVTRVQFRELSDAEIEAYLLAETPYDVAGSA
                     KSEGLGITLVDAIHSDDPTALVGLPLIALSQMLRTAGFPLMGAA"
     gene            2807..3460
                     /locus_tag="VKJ77_18730"
     CDS             2807..3460
                     /locus_tag="VKJ77_18730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HMC47359.1"
                     /translation="MTQNPGKPACPADLRALDLFEFAQSRRQAAGGVRVSQLPRMLNE
                     IPADAPDRDTVFSWQAEGSMQPELQDDGTEAPQPYLRLAVHGSVWIECQRCLSPYSQH
                     LDVDATYRIVTTEDEADEFPLDNDEVEVIVGSRQFDLVDLIEEELLLTLPLVPKHEVC
                     PEVHESLVTGLAGAEGELDDGGLNGDAGTQQDGGTGRPNPFAALGKLKQGGSDDNKH"
     gene            3660..3839
                     /gene="rpmF"
                     /locus_tag="VKJ77_18735"
     CDS             3660..3839
                     /gene="rpmF"
                     /locus_tag="VKJ77_18735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009889986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HMC47360.1"
                     /translation="MAVQQNKKSPSKRGMHRSHDFLTAPALAVEPGTGEVHLRHHVSP
                     NGYYRGKKVIKTKND"
     gene            3981..>4813
                     /gene="plsX"
                     /locus_tag="VKJ77_18740"
     CDS             3981..>4813
                     /gene="plsX"
                     /locus_tag="VKJ77_18740"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006764798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HMC47361.1"
                     /translation="MTVKITIDCMGGDHGPAVTVPAAVSFVRSHPDAQLLLVGIESAI
                     RAQLKKCKATDETRLTVVPATEVVEMDDSVEIALRRKKDSSMRVALNLVKEGQAQTCI
                     SAGNTGALMAVSRYVLKTLPGIERPAIAFAMPSQKGFTTVLDLGANVDCEPQHLLQFA
                     EMGHALVAAIGDKERPTIGLLNIGEEVIKGNDVIKRAGELLRASTLNFYGNVEGNDIY
                     KGTTDVVVCDGFVGNVALKTSEGLAQMLTDIIREEFSRSLLTKLMALVAMPVLKRFKR
                     RV"
BASE COUNT          994 a         1367 c         1518 g          934 t
ORIGIN      
        1 agtgccaact ggcgacaact gggagcgcgc cgcgctcgaa cgcatcgcgc tggcggcaat
       61 cgatgaacag cgggccgcgc gccgctggcg gatctttttc cgcttcgtgt tcctggctat
      121 cctggcgatt gcggtctgga gcgcattcga tttcaccagc gataaagtcg cgaaaaccca
      181 acgccatacg gcgctggtcg aactggaagg cgagattgcc gccaatagcg acgccagttc
      241 ggacaacgtg aacgcagcgc tcgacagcgc ttttgaagac gacggcaccg cagcggtgat
      301 ccttcgctgc aacagcccgg gcggcagtcc ggtgcaggcg ggcatcatta atcgcgagat
      361 cacgcgcttg cgggcgaaat atccatcgaa accgctgtat gttgttgtgg gcgacatgtg
      421 tgcctcgggc ggttattacg ccgccgccgc cgccgataag atctacgtcg acaaggcgag
      481 catcgtcgga tcgattggtg tgctgatgga cggtttcggc tttacgggct tgatggacaa
      541 gcttggcgtg caacgccggc tgcacacgtc gggcgcaaat aaaggcgcat tcgatccgtt
      601 ctcgccggaa acgccgggta tggatgccca cgcgcaggaa atgctcgacc agattcacca
      661 gcaattcatc gatgccgtca aacaaggccg gggcaatcgg ctgaaagagt cgcccgatgt
      721 gttctcgggc atgttctgga cgggtcagaa gagcgtggaa ctgggtctcg ccgatggttt
      781 cggcgacgcc gattacgtcg cacgcgagat cgtcaagcag ccggatctcg tcgattacac
      841 ccagaaggag agcattggtg agcgtgtggc gcgcaagttt ggcgcggcgg tcggcaatgc
      901 atcgatgcac gcgctgatga tgggcgggaa gatgcagttg aagtaagttt ccaggcgttc
      961 ttcagataaa aaccgctcgc cttgagtctt caggcgagcg gtttttttgt gcgtagtcgg
     1021 gaatgcgtgg ctaagggatg cgccccggcc tatgcgccta gtagcaggaa aatcgccggt
     1081 cgcttatgta actccggcgc agctttcttt ttccactccg acacggttcg cgtgacgatc
     1141 gtctcggccg gcaacgtcag gtcgaccgcg acgcacacca gcgtggacgg cgcgcaggtt
     1201 gcaagcagcg tgtccagcag cgcgcgattc ctgtacggcg tctcgataaa tatctgcgtc
     1261 tggttcgcct tgcgggacag cgcttccagt tcacgcaggc gtttgccccg ttcggcggca
     1321 tcgacgggaa gatatccgtt gaacgcgaaa ctctggccgt tcatgcccga cgccatcagc
     1381 gccagcaaaa tcgaactggg accaacgaac ggcaccactt tgacgccgcg ctcgtgggcg
     1441 cggcgcacga gcagggcgcc cggatcggcg accgccgggc atcccgcttc ggagacgaga
     1501 cccgcatcgg tgccggccaa aatcggtttg agcagcttgt cgacttcacc cggcggcgtg
     1561 ttgacgttga gttcgcggat ctcgatttcc tggatcggcc gttcggttcc gacctttttc
     1621 aggaagacgc gcgttgtttt cgcgttctca ccaatgtagt actgcagcgc cgcggcgcgt
     1681 gcacgcacgg gttcgggaag aacgtcggcg agcgcggcgc tgtcgccgtc gccgagcgtg
     1741 ttcggaatca agtacaaaat gccgctcatg ctgcccccat taacggaaac ccggccgtac
     1801 gcaacatctg cgacaacgcg atcagcggca aaccgaccag cgcggtggga tcgtcggaat
     1861 gaattgcgtc gacgagcgtt atgcccaaac cctccgattt cgcgctaccg gccacgtcgt
     1921 aaggtgtttc ggcaagcaaa tacgcttcga tttccgcatc cgacagctcg cggaattgca
     1981 cgcgggtgac gatatcggcg gattggatct ggtccgagcg gctgtcgaag agacaaagcg
     2041 cgctatggaa ttcgacactt ttaccgcgca tcgactgaag ctgggcgcga gcgttgtcgt
     2101 gcgtgccggg cttgccgatc tgacggccgt cgcaagtcgc gacctggtct gagccgatca
     2161 cgagtgcgcc cgaagcatcg ctcacgcggg ccgcggccgc acgggccttg gcgatcgaca
     2221 gccggacagc cgtggcttcc ggcgtttcgc cgccgagcgg cgtttcgtcg atatcgggcg
     2281 tgattacatc gaagggaatg cgcaggcgct cgagcaactc ccgccggtaa cgcgaactcg
     2341 atgcaaggat gaggcgcggc ttagttgaga cgtcggacat gaaaaggatt ggctatgaac
     2401 aatgaggtta gggactgaaa tcgggctggg accgaactaa aatggcggtg ccgcacgccg
     2461 aagcataagt gtttgactcg aaaagacaaa gccgctatga ttttgggctt ttcatcggta
     2521 tgcgaaggcc tttttacgca taccgagatg gcgacggtgg ccggaagtgt accgagtgtt
     2581 tggcggtcca agaggcggcc cagaggcagg gtagagctag cagagccgtt ttggagggcc
     2641 ggatgtggtg ctctcaggta cgcggcaagg cgctcaagct ggaaaatcgg gataaaccac
     2701 accagccgga cgggtccggt gcggtgcata ctgcagcttc acccccggtc gtcctccgcg
     2761 gacttgctat ctagccgtcg cggcaacgac cactgcagga gcgcacatga cacagaatcc
     2821 tggcaaacct gcatgtcccg ccgacttgcg cgcactcgac ctgttcgaat tcgcccaaag
     2881 ccgtcgtcag gcagcaggtg gtgtacgggt ctcgcaattg ccgcgtatgt tgaacgaaat
     2941 accggcagat gccccagacc gcgacacggt attttcatgg caggccgaag gctccatgca
     3001 gcccgagttg caggacgacg gtaccgaggc gccgcagcct tatttgcggc tcgcggtgca
     3061 cggatcggtc tggatcgaat gccagcgttg tctttcgccg tattcgcaac acctggatgt
     3121 cgatgcaacg tatcgcattg tcacgacgga agacgaagca gacgagtttc cgctagacaa
     3181 cgatgaagtg gaagtgatcg ttggctcacg ccagttcgat ctcgtcgact tgatcgaaga
     3241 ggagttgttg ttgaccttgc cgctcgtgcc gaagcacgaa gtgtgtcctg aagtgcatga
     3301 gagcctggta acgggcctcg cgggcgccga gggtgagctg gacgatggtg gtctgaatgg
     3361 cgatgcaggc acgcagcagg atggcggcac aggcagaccc aatccgttcg ccgcgctcgg
     3421 taagctcaag cagggcggtt ccgacgacaa caagcattag gtaacgttaa gcggtcattg
     3481 aagcgcgcgc attgagtgtg cttcaaacgc tcgcattaaa agagtattga tgtccggcat
     3541 caggccgggc gtcgaatcat caggcggcgc gatgcgtccc gaaagactcg ctggccaaag
     3601 gtcggggtct cgggcgtgtc gagctgtgtt agaattcgca aaatttttct ggagtcatca
     3661 tggcagttca gcaaaacaag aaatcaccgt ccaagcgcgg catgcatcgt tcgcacgact
     3721 tcctgaccgc gccggcgctg gctgttgagc cgggcacggg tgaagtccat ctgcgtcacc
     3781 acgtgagccc gaacggctac tatcgtggca agaaagtcat caagacgaag aacgactaag
     3841 cgtacgacgc ttgttgcgtc tggcgtcacc gtcttgactc gtggtctgag tcgcggttgt
     3901 tcgcgcttga catgttcccg gtacaacaag aaggcggcat ttcactgccg cttttttgtg
     3961 cctgaaattc gtcgcactcc atgaccgtaa agatcactat cgactgcatg ggaggcgacc
     4021 acggcccggc cgtgactgtt cccgccgcgg tcagtttcgt gcgttcgcat cctgatgcgc
     4081 agttgctgct tgtcggcatc gagtcggcca tccgcgcgca actgaagaag tgcaaagcca
     4141 ctgacgaaac ccgactgacg gtcgtcccgg cgaccgaagt ggtcgagatg gacgattcgg
     4201 tagagattgc actgcgccgg aagaaagatt cgtccatgcg ggtggcgctc aatctcgtca
     4261 aggaaggcca ggcccagacg tgcatctcgg cgggcaacac cggcgcattg atggccgtgt
     4321 cccgctacgt gctgaaaacg ctgccaggca ttgagcgacc ggctatcgca ttcgcgatgc
     4381 caagccagaa gggcttcacc accgtgctcg acctgggcgc gaacgtggac tgcgagccgc
     4441 aacacttact gcaattcgcc gaaatgggcc acgcgctggt cgccgctatc ggggacaagg
     4501 agcggccgac tattggtctg ctcaacatcg gcgaagaagt catcaagggc aacgacgtca
     4561 tcaaacgcgc cggcgaattg ctgcgcgcaa gcacgctcaa tttctacggc aacgtggaag
     4621 gcaacgacat ctataaaggc acgaccgacg tggtcgtatg cgacggtttt gtcggcaatg
     4681 tggcgctgaa gacctcagaa ggtttggcgc agatgctgac cgacatcatc cgcgaggaat
     4741 tcagccgatc gcttctgacg aagctgatgg cgctcgtcgc catgccggtt ctcaaacgct
     4801 ttaaacgccg ggt
//
LOCUS       DATGBK010001340         1752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_316610, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001340 DATGBK010000000
VERSION     DATGBK010001340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316610"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..491)
                     /locus_tag="VKJ77_18745"
     CDS             complement(<1..491)
                     /locus_tag="VKJ77_18745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47362.1"
                     /translation="MKNDVTSDLEFFVQLARLGSLSAAARALDLTPPAATRRLALMEQ
                     RLGVRLVNRTTRSASLTDEGDTYLRHATRILAAVSEMEDAVSRSREAPRGILRVNASL
                     GFGRTTIAPLVSAFVQRYPQVEVQLDVTDRPVDIVEQGFDLAMRFGALPDTRLNARRI
                     MSNR"
     gene            608..>1752
                     /locus_tag="VKJ77_18750"
     CDS             608..>1752
                     /locus_tag="VKJ77_18750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011660310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HMC47363.1"
                     /translation="MKIVEIREQTIPISSSIRNAYIDFSKMTLSLVAVITDVIRDGKP
                     VVGYGFNSNGRYGQGKLMRERFIPRVLEAEPDSLVDASGNNLDPHKIWATMFTNEKPG
                     GHGERSVAIGTIDMAVWDAVAKIEGKPLFQLLAERYGNGTPDREIFVYAAGGYYYPGQ
                     DFGKLKDEMRSYIDRGYTVVKKKIGGGSLDDDLRRIDAVLSVLQDGQKLAVDANGRFD
                     LDTAIQYAKALSQYDLFWYEEPGDPLDFELQATLRNYYDKPMATGENLFSMQDARNLI
                     RYGGMRADRDYLQFDCALSYGLVEYLRTLDMLHQHGWSRSRCIPHGGHQMSLNIAAGL
                     GLGGNESYPDLFQPFGGFPDGVKVHNGYVTLPDLPGIGFEGKSDLYV"
BASE COUNT          373 a          494 c          537 g          348 t
ORIGIN      
        1 cggttcgaca tgatgcggcg cgcgttgagc cgcgtatcgg gtaacgcacc gaagcgcatg
       61 gcgagatcga aaccttgctc gacaatatcc actggccggt ccgtcacatc cagttgaacc
      121 tcgacctgcg gatagcgctg cacgaacgcg gagacgagcg gcgcgatggt cgtgcggcca
      181 aagccgagcg aggcattcac gcgcaatatg ccgcgcggcg cttcacggct gcgtgatacg
      241 gcatcttcca tctcactcac ggcggcaaga atacgcgtcg cgtgccgcag atacgtgtcg
      301 ccctcgtcgg tgaggctcgc gctgcgcgtg gtgcggttga ccagcctgac gcctagccgc
      361 tgttccatca gcgcgagcct ccgggtggcg gcaggcggcg tcagatcgag cgcacgcgcg
      421 gcagccgaca agctgccgag gcgcgccagc tggacaaaaa actcgagatc ggaggtgacg
      481 tcgttcttca cttaaactga ataatcatat gtgtacggtt gaagtgtaac gcggctgcgc
      541 gcgcgtaagc ttcgttatca gctgacgcgc ccccaaacgc gttccctggc acacaggaga
      601 cagtcacatg aaaatcgtgg aaatccgcga gcaaaccatt ccgatcagtt catccattcg
      661 gaatgcgtat atcgacttca gcaagatgac gctcagtctc gttgccgtca tcaccgacgt
      721 cattcgcgac ggcaagccag tggtcggcta cggcttcaat tcaaacggac gatacggtca
      781 aggcaagctg atgcgcgaac gttttattcc gcgcgtgctg gaagccgagc cggattcatt
      841 agtggatgcg tcgggcaata accttgatcc gcacaagatc tgggctacga tgtttacgaa
      901 tgaaaagccc ggcggtcatg gcgagcgctc ggtggcgatc ggcactatcg acatggcggt
      961 gtgggatgcg gtcgcgaaga tcgaaggcaa gccgctgttc cagctgctgg cagaacgcta
     1021 tggcaacggc acgccggacc gcgagatatt cgtttatgcg gcgggcggtt actactatcc
     1081 cgggcaagat ttcggcaagc tgaaagacga gatgcgcagc tatattgacc ggggttatac
     1141 ggtggtcaag aagaagatag gcggcggttc gctcgatgac gacctgcgcc ggatcgacgc
     1201 ggtgctgtcc gtgctgcaag acggtcaaaa gcttgccgtc gatgcaaacg gccgcttcga
     1261 cctggacacg gccattcagt atgcaaaggc cctctcgcaa tacgacctgt tctggtacga
     1321 agagccgggc gatccactcg atttcgaact gcaggccacg ctgagaaatt actacgacaa
     1381 gccaatggca accggcgaga atttgttctc gatgcaggat gcgcgtaacc tgattcgcta
     1441 tggcggtatg cgggccgacc gcgattacct gcaattcgac tgcgcgctga gctatgggct
     1501 ggtcgaatat ctgcgtacgc tggacatgtt gcatcagcac ggctggtcgc gttcacgctg
     1561 cattcctcac ggtggccacc agatgtcatt gaacattgca gcgggtctcg gcctgggcgg
     1621 caacgagtct tacccggatc tgttccagcc atttggcggc tttccggacg gcgtgaaagt
     1681 gcataacggc tatgtgacct tgccggatct tcccggcatc ggctttgaag gcaagagcga
     1741 tttgtatgtc ca
//
LOCUS       DATGBK010001341         2104 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_271025, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001341 DATGBK010000000
VERSION     DATGBK010001341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271025"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..789)
                     /locus_tag="VKJ77_18755"
     CDS             complement(<1..789)
                     /locus_tag="VKJ77_18755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase subunit epsilon"
                     /protein_id="HMC47364.1"
                     /translation="MIAFLFPGQGSQFPGFLNTLGGATPHARFAETIEEASDVLHIDV
                     LSLDHADALSSTVAVQLSLLVAGVATVRALQDEGIEPDAVAGLSVGAYGAAVACNALS
                     FDDALRLLHLRAQLMERAYPSGYGMLAVSGLSERELGAVIANAHTQAAYIANLNAPRQ
                     IVVAGADTDLDQVRERALEAGARKAERLAVSVPSHCVLLDDAARELTEAASKITFRAP
                     TIPYISNRGARPLRQADAIRIDLATNLRYPVRWHDSTIVLGELGA"
     gene            complement(786..1427)
                     /locus_tag="VKJ77_18760"
     CDS             complement(786..1427)
                     /locus_tag="VKJ77_18760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase holo-ACP synthase"
                     /protein_id="HMC47365.1"
                     /translation="MGRVVNPHDLLHLAPGTPDFPDAPAWVAASLKRAPFVVVRRAVP
                     VNGLIAVGIRGAMRSERFGSWLDSRYVERVLEPEALLANLKPSVTRAQLPAFALLQAV
                     APLCDATGYVWGPTGSSGFELASGCPTVTQTSDLDLLMRAPDPLGRTSAKTLFDAVSQ
                     AALHHGTRIDVQIQTPDGAFSLAEYAHPGARVMLRCADGPKLVADPWQTSQAA"
     gene            complement(1412..>2104)
                     /gene="mdcE"
                     /locus_tag="VKJ77_18765"
     CDS             complement(1412..>2104)
                     /gene="mdcE"
                     /locus_tag="VKJ77_18765"
                     /EC_number="4.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-independent malonate decarboxylase
                     subunit gamma"
                     /protein_id="HMC47366.1"
                     /translation="TIVPDPHNRFPRATDNVVGLEQGWLLARAVRDATDADRDASVKR
                     PIVAIVDVKSQAYGRREELLGVHLACAAGVDAYASARLAGHPVIALIVGPAMSGAFLA
                     HGYQANRIIALDADGIAVHAMGKEAAARVTRRSVEGLDELGDRVLPMSYKMSAYAKLG
                     LLHELIAGINADAPGHEDIDRVQSSLIAAIDDARKGPRDLSSRLQSADAKRIRAASIE
                     VRKRMAEQWDAS"
BASE COUNT          424 a          672 c          644 g          364 t
ORIGIN      
        1 tgcgccgagt tcgcccagca cgatagtcga gtcatgccag cgaacgggat agcgcaggtt
       61 tgtcgcgagg tcgatacgga tagcgtcagc ctggcgcaaa ggccgtgcgc cgcgattgct
      121 gatatacgga atcgtcggcg cacggaaggt gatcttgctc gcggcttcag tgagctcgcg
      181 agcggcatcg tcgagaagca cgcagtggga cggcacactg accgccaacc gctcggcctt
      241 gcgtgcgcct gcctcaagcg cgcgttcgcg tacctggtcg agatcagtgt cggcgcctgc
      301 caccacgatc tgtcgcggag cattcaaatt cgcaatgtaa gcggcctgcg tatgggcatt
      361 cgcgatgacg gcgcccagct cacgctcgct caaacccgac accgccagca tcccgtaccc
      421 gctcggataa gcccgctcca tcaattgcgc gcgaaggtgt agcagcctca aagcatcgtc
      481 gaaagatagc gcattgcacg caaccgcagc gccatacgcg cccaccgata aacccgccac
      541 cgcatccggc tcgatgcctt catcctgcaa tgctcgcacg gtcgcgacgc ccgcaacaag
      601 caagctgagc tgcacggcga cggtcgaact caaagcgtcg gcgtgatcga gcgagagtac
      661 gtcgatatgc agtacatcgg acgcttcttc aatggtttca gcaaaacgcg cgtgcggcgt
      721 cgcgcctccc agcgtgttca aaaagcccgg aaattgcgag ccttgaccgg ggaagagaaa
      781 cgcgatcatg ctgcttgact cgtctgccat gggtcggcga cgagtttcgg gccgtcggcg
      841 caacgcagca tcacgcgtgc gccaggatgc gcgtattcgg ctagcgagaa cgcgccgtcg
      901 ggcgtctgga tttgcacatc aatgcgtgtg ccgtggtgga gcgcggcttg ggagacggca
      961 tcgaatagtg tcttcgctga ggtgcggccg agaggatcag gcgcacgcat caggaggtcg
     1021 agatcgcttg tttgcgtgac cgttggacag ccgcttgcga gttcaaagcc gctgctaccg
     1081 gtgggtcccc aaacgtagcc ggttgcatcg cagagtgggg cgactgcttg cagcaatgca
     1141 aacgcgggca actgtgcgcg cgtcactgag ggctttaagt tcgcaagaag cgcttccggc
     1201 tcaaggaccc gctcaacata acgcgaatca agccacgagc cgaaacgctc gctgcgcatc
     1261 gcgccacgaa tgccaaccgc gatcaacccg ttcaccggca ccgcgcgtcg aaccaccacg
     1321 aacggtgcac gtttcagtga tgctgcgacc cacgccgggg catcggggaa atcaggcgta
     1381 cccggcgcga ggtgcaacag gtcgtgcgga ttcacgacgc gtcccattgc tccgccatgc
     1441 gcttgcggac ttctatcgat gcggcgcgaa tccgcttggc atccgccgat tgcaaccgcg
     1501 acgagagatc gcgcggacct ttccgtgcat cgtcaatggc agcgattaac gaggactgca
     1561 cacggtcgat atcttcgtgc ccgggcgcat ccgcattgat accggcgatc agctcatgca
     1621 gcagcccaag cttggcgtaa gcgctcatct tgtacgacat cggcaacacg cggtcgccga
     1681 gttcatcgag cccttcgacg ctacggcgcg tgacccgcgc ggcggcttcc ttgcccattg
     1741 catgcacagc gattccgtcc gcatccagcg cgatgatccg gttcgcctgg taaccatgcg
     1801 cgaggaacgc gccggacatc gccgggccga caatcaacgc gatcacagga tgaccggcga
     1861 gccgcgcgct tgcatatgca tcgacaccgg ccgcgcacgc gagatgaacg ccaagcagtt
     1921 cttcgcgacg gccgtacgcc tgacttttca catcgacgat agccacgatc ggacgcttga
     1981 ccgaagcatc acggtccgca tccgtcgcgt cgcgtacagc gcgtgcgagc aaccatcctt
     2041 gttcgagacc gaccacgttg tcggtcgcac gcggaaagcg gttatgcgga tcgggaacga
     2101 tggt
//
LOCUS       DATGBK010001342         3622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108536, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001342 DATGBK010000000
VERSION     DATGBK010001342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3622
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108536"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            5..790
                     /locus_tag="VKJ77_18770"
     CDS             5..790
                     /locus_tag="VKJ77_18770"
                     /inference="COORDINATES: protein motif:HMM:NF017946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 family transporter protein"
                     /protein_id="HMC47367.1"
                     /translation="MYREYWRINILTTLAYRENFLLWFGFTFVYHGSAIAALWVILHE
                     FPSMNGWDFKDMAFLYGLWMMGHALHNTFFSAINDIPEHVQDGEFDRMLVRPHDTLFQ
                     TITQPGQIFPDELVLALTFFIFATWLCGVHVGVLFVVMVPLIILGGALIDLAISLAIA
                     TLAFWFVRVDALRWLVLQLEQEFTRYPISIYSRGVRLMLAFVFPFAFMNYFPAAFFLN
                     KTDNGLALPAAVGLLTPLIGIIAAGLAYMFWRFGLNRYQGVGH"
     gene            complement(887..3388)
                     /locus_tag="VKJ77_18775"
     CDS             complement(887..3388)
                     /locus_tag="VKJ77_18775"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HMC47368.1"
                     /translation="MSMWEPFTERARRSIVLAQEEAQRLGNNYIGTEHILLGIISEGE
                     SLAAKVLETLGVNLAKVRQEVEAIVGRGGQTVQQEMVFTPRAKRVIELAFEEARQLNH
                     NYIGTEHLLLGLIREGEGVAARVLTNLGVDPAKVRVQTTSLLGAEGQPPPAKGKSKTP
                     TLDAYGRDLTTLARENKLDPVIGRANEIERVIQILARRTKNNPALIGEPGVGKTAIAE
                     GLAQRVIKGEVPEPLRDRRVITLDLAGLVAGTKYRGEFEERMKRVMDEIRGAAGEIIL
                     FIDELHTLVGAGAAEGAIDASNIIKPALARGELQCIGATTLNEFRKHIEKDSALERRF
                     QPVLVGEPSVDETVEILKGLRDRYEAHHKVTITDEALVAAAKLSDRYISDRFLPDKAV
                     DLIDEASSRVRLQATLPPQEIRDIETEIRKVKTEKESVVKSQEFEKAASIRDREEKLR
                     LEKQRLDAEWADKKAAADKTLKVTEADIAYIVSSWTRIPVAKLAQAETLKLLGMQEEL
                     HKRVVGQNQAIEVITRAIRRSRAGLKNPKRPIGSFIFLGPTGVGKTEVARSVAEFLFD
                     DAESMIRIDMSEYMEKYAVSRLVGAPPGYVGYEEGGQLTEAVRRRPYCVILLDEIEKA
                     HPDVFNLLLQVLEDGRLTDSQGRVVDFKNSVIIMTSNVGATGMTMSTDIGFRPQKDGG
                     NSDEANYERMKNKVLEEIKHTFRPEFINRVDEIVVFHQLSRPQIEEIVGLELDKVLRE
                     VRAQEMELEVTDDAKKLLAKKGWDPQFGARPLRRAIQREVEDELAEEMLRGMFGAGDR
                     ILAEVNPDNPEKLKFSKIPNVEPPAALPPSEVQSV"
BASE COUNT          661 a         1100 c          995 g          866 t
ORIGIN      
        1 tggcgtgtat cgcgagtact ggcgcatcaa tattctcacc acgctggcat accgcgagaa
       61 ctttctccta tggttcggct ttacgttcgt ctaccacggt tccgcgattg cggcgctctg
      121 ggtgattctg cacgaattcc catccatgaa cggttgggat tttaaggaca tggcgtttct
      181 ctacgggctg tggatgatgg gccacgccct acataacacg ttcttttccg cgatcaacga
      241 tattcccgag cacgtgcaag acggcgagtt tgaccggatg ctcgtgcgcc cgcacgatac
      301 gctattccaa acgatcacgc agcccggcca gatattcccc gacgagctcg ttctcgcgct
      361 cacattcttt attttcgcaa cctggctttg cggcgtgcat gtgggcgtat tgtttgtggt
      421 gatggtgccg cttattattt tgggcggcgc gctgatcgat ctcgcgatca gcctggcaat
      481 cgcaacgttg gcgttctggt tcgtacgcgt tgacgcgttg cgctggctcg tgcttcagct
      541 cgaacaagaa ttcacgcgct acccgatcag catctactcg cgcggcgtcc ggctgatgct
      601 cgccttcgtc ttcccgtttg cgttcatgaa ctatttcccg gccgcattct ttctcaataa
      661 aaccgataac ggtcttgccc ttccggccgc cgtcggctta ctcacaccgc tcatcgggat
      721 catcgccgcc ggcctcgcct acatgttctg gcgcttcggc ctaaaccgct accaaggcgt
      781 cggccattaa aaaacgataa tctcgcccct tccgataacg ccgcggcttg cggccgcagg
      841 ccgcaaacgc catggattgg gagttcgtca agaactccca atcctgctag accgattgaa
      901 cctcggaggg cggcaaagcc gccggtggtt cgacattcgg tatcttcgag aatttgagct
      961 tctcgggatt atccggattg acttcggcga gaatccgatc gcccgccccg aacatgccgc
     1021 gcagcatctc ttcggccagt tcgtcctcga cttcgcgctg aattgcgcga cgcagcggac
     1081 gcgcaccgaa ctgcggatcc cagcccttct tggcgagcag tttcttcgcg tcgtcggtaa
     1141 cttcgagttc catctcttgc gctctgactt cgcgtaagac tttgtcgagt tccagaccga
     1201 cgatttcttc gatctgcggg cgcgaaagtt gatggaagac cacgatctcg tcgacgcggt
     1261 tgataaattc cggccggaac gtgtgcttga tttcctcgag cactttgttc ttcatccgct
     1321 cgtagttggc ttcatcggaa ttgccgccgt ccttttgcgg acggaagccg atgtcggtcg
     1381 acatcgtcat gccggttgca ccgacattcg aggtcataat gatcaccgag ttcttgaagt
     1441 cgacaacgcg gccctgagaa tccgtcaacc gtccgtcttc gagcacttgc aagagcaagt
     1501 tgaagacgtc cggatgcgct ttctcgattt cgtcgagtaa gatcacgcag tacggacggc
     1561 gacgcacggc ttcggtaagc tgtccgccct cttcgtaacc gacgtatccc ggaggtgcac
     1621 cgacaagccg cgagaccgcg tacttctcca tgtactccga catatcgatg cggatcatgg
     1681 attcggcatc atcgaataag aactcggcca cgctgcgcgc gacttcggtc ttaccaacac
     1741 cggtcggtcc gaggaaaatg aacgagccga tcggacgttt gggattcttg aggccggcac
     1801 gcgagcgacg gatcgcacgg gtgatgactt caatggcctg attctggccg acaacgcgtt
     1861 tgtgcagttc ctcttgcatg cccagcagct tgagggtttc cgcttgcgcg agtttggcga
     1921 ccggaatacg cgtccacgaa ctaacgatgt acgcgatgtc cgcttcagtg actttgagcg
     1981 tcttatccgc ggcggctttc ttatcggccc attccgcatc gaggcgctgt ttctcaagac
     2041 gcagcttctc ttcgcgatcg cgaatggagg cagctttctc gaattcttgc gacttcacga
     2101 ccgattcttt ttcggttttc accttacgaa tttcggtttc aatatcgcgg atttcttgcg
     2161 gcggcaacgt cgcctgcaaa cgcacgcgcg acgaggcttc gtcgatcaga tcgacggcct
     2221 tatcgggcaa gaaacggtcg ctgatgtagc ggtcgctcag cttcgcggca gccaccagcg
     2281 cttcatcggt aatcgttacc ttatgatgcg cttcgtagcg atcgcgcaga cccttgagaa
     2341 tttcgaccgt ttcgtcgact gaaggttcgc cgacaagcac cggctggaag cggcgttcga
     2401 gcgccgagtc cttttcgatg tgtttgcgga attcgttgag cgtcgtcgcg ccgatgcact
     2461 ggagctcgcc gcgcgcgagc gcgggtttga tgatgttcga cgcatcgatc gcgccttcgg
     2521 ccgcaccggc gccgacgagt gtatgcaatt cgtcgatgaa cagaatgatc tcgccggctg
     2581 cgccgcggat ttcatccatc acgcgtttca tacgctcttc gaattcacca cgatatttcg
     2641 tgccggctac caagcccgcg agatctagcg ttatcacgcg ccggtcgcgc agcggctcgg
     2701 gcacttcgcc cttgatgacg cgttgtgcca ggccttcggc gatcgccgtc ttaccaacgc
     2761 ccggttcgcc gatgagggcc gggttatttt tcgtgcgacg cgcgagaatc tgaatcacgc
     2821 gctcgatttc gttcgcgcga ccgatcaccg gatcgagttt gttttcgcgt gcaagcgtcg
     2881 ttaaatcgcg accgtacgca tcgagcgtcg gcgtcttcga tttgccctta gccggcggcg
     2941 gttggccttc ggcgccaagc agcgacgtgg tctgcacgcg aactttagcc ggatcgacgc
     3001 ccaggttcgt gagaacgcgc gcggcgacgc cttcaccctc gcggatgaga cccagcaaca
     3061 gatgttcggt gccgatgtaa ttatgattga gctggcgcgc ttcttcgaag gcaagctcga
     3121 tcacgcgctt ggcgcgcggc gtaaacacca tctcctgttg aacggtctgg ccgccgcgac
     3181 cgacgatggc ctcgacttcc tgacggacct tggccaagtt gacgccgagc gtctccagca
     3241 ctttggccgc caggctctcg ccctcggaaa tgatgccgag taaaatatgc tcggtaccaa
     3301 tataattgtt gcccaggcgc tgtgcttctt cttgcgctag gacgatcgaa cgacgcgctc
     3361 gctcggtaaa cggttcccac attgacatga cggttttaga ctccccaagc gaccgtgtcg
     3421 ctctctaccg ccgaccccac cgtctactgt tagaaccgat ggtttcggtt gctgttataa
     3481 ccttcggccg tttcgtacag tttcaaaccc gacttgcctt gaaagcacgc gcctcctgcg
     3541 ctacgagagg gagcgaccgc cgaatgtgct aaacgagtcg actcttcccc gaaacgcctt
     3601 ttcgggctgt aaccgcacgc ag
//
LOCUS       DATGBK010001343         1911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_154619, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001343 DATGBK010000000
VERSION     DATGBK010001343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154619"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..1219
                     /locus_tag="VKJ77_18780"
     CDS             41..1219
                     /locus_tag="VKJ77_18780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019573965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC47369.1"
                     /translation="MRFVREEAIPRENEIEQADQVPADLVERMRGLGYFGWSIPRDFG
                     GAGLSTEQLVRGAFALSQASVAFRARVGTNTGIGSEALVADGTDDQKQRYLPLLASGV
                     MTGAFALTEPDAGSDATALQTTARRDGDHYVLDGSKCFITNAPIADLFTVMARTDPSI
                     PGASGISAFLVERGTPGLSTSEPYQKMGQAGSPVGDVHFDGCRVPAANLIGEVEGQGF
                     RTTMKVLNKQRIHLAALCTGPAIRMLDEAVAYTSTREQFGKPVSDFQLVQALIAECQT
                     EIYAARSMILDTARKRDAGEDVALEASMCKMFASEMCGRVADRAVQMLGGRGYLAGNA
                     VERFYRDVRAFRIYEGTTQIHQLNIAKITLRRAAQAKEARAEEAQAKDSVGTTAARAA
                     "
     gene            1228..>1911
                     /locus_tag="VKJ77_18785"
     CDS             1228..>1911
                     /locus_tag="VKJ77_18785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HMC47370.1"
                     /translation="MKSPRGLDIEQLVSPRSIAIIGASNDPKSISGQPMRFLMQHGYQ
                     GALYPVNPKYAEIAGLACYVSIESLPTTPDLALILVAARRVPDMLRQCGEKGIRYAIV
                     YSSGFAEAGVAGAALQRECTAIAKAFGLRIIGPNCQGLVSTDTGVYAGFGAPFGVSYR
                     PGGLSLISQSGGFGCALLLMADELGIGLRHFITTGNEADVSLLDLVDACIDDAQTLLI
                     ATYIEGLKDA"
BASE COUNT          353 a          577 c          620 g          361 t
ORIGIN      
        1 tgaattcgac gcggaattcg acacactact cgccgatgta atgcgtttcg tgcgtgaaga
       61 ggcgatccca cgcgagaacg agattgagca ggcggatcag gtccccgcgg atctcgtcga
      121 acggatgcgc ggactcggct actttggctg gagcatcccg cgcgatttcg gcggtgcggg
      181 cctttccact gaacaactcg ttcgcggtgc attcgcgctt tcacaagcgt cggtggcgtt
      241 tcgagcgcgt gtcggaacga acacgggcat cggctccgag gcactcgttg cggacggtac
      301 ggacgaccag aagcagcgtt acctgccgct cctcgcatcg ggcgtgatga ccggcgcgtt
      361 cgcgctgacc gagccggatg ccgggtccga cgcaaccgcg ctacagacaa ccgctcggcg
      421 cgacggcgac cactatgtgc tcgacgggag taagtgtttc atcacgaatg cgcccattgc
      481 cgacctcttc acggtcatgg cccgcaccga tccatcaatc ccgggggcca gcggcatctc
      541 tgcgttcctg gtcgagcgcg gcacgcccgg cctctcgacg agcgagccgt atcagaagat
      601 ggggcaggcc ggttctcctg ttggcgacgt gcatttcgac gggtgccggg tgccggcggc
      661 gaacctgatc ggcgaagtgg aagggcaggg atttcgcacg acgatgaaag tgctgaacaa
      721 gcagcgcatc cacttggccg cgctatgcac gggtcccgct atccgcatgc tcgacgaagc
      781 ggtcgcttat acgtccactc gcgagcagtt cggcaagcca gtctcggact tccagctcgt
      841 gcaggcgctg atcgccgaat gtcagacgga gatctacgcc gcccgctcga tgattctcga
      901 caccgcgcgc aaacgcgatg ccggcgagga cgtcgcgctg gaagcgtcga tgtgcaagat
      961 gtttgcctcc gagatgtgcg ggcgggtcgc ggaccgggcc gtgcagatgc tcggtggacg
     1021 cggctatctc gcgggcaatg cggtggaacg gttctatcgt gatgtccgcg catttcgcat
     1081 ctacgaaggc accacgcaga tccatcagtt gaacatcgcg aagattacat tgcggcgcgc
     1141 ggcacaggcg aaagaagctc gggctgaaga agcgcaggcg aaggacagcg tcggtacgac
     1201 cgctgcgcgt gccgcatgag cgccgccatg aagtcgccac gcgggctcga catcgaacag
     1261 ttggttagtc cgcgttcgat cgcgatcatc ggtgcatcga acgaccctaa atcgattagc
     1321 ggccagccga tgcgctttct catgcagcac ggctatcaag gcgcgctgta tccggtgaac
     1381 cccaaatacg cggaaatcgc agggcttgcg tgttacgtga gcattgaaag cctccccacg
     1441 acgccggatc tcgccctgat cctcgtcgcc gcgcgacgcg tgccggatat gctgcgccag
     1501 tgcggcgaga aaggcattcg ctacgcgatc gtctacagct cgggcttcgc cgaagcgggc
     1561 gttgccgggg ccgcgctgca gcgtgagtgc acggcgattg cgaaggcttt tggccttcgc
     1621 attatcggac cgaattgtca gggtcttgtt agcacggaca ccggcgtcta cgcaggcttc
     1681 ggcgcaccgt ttggcgttag ttaccggccc ggtggcctct cgctgatctc gcaaagcggc
     1741 gggttcggct gcgcgctgtt gctgatggcc gacgaactcg gcatcggctt gcggcatttc
     1801 attacgactg gcaatgaagc cgatgtgagc ctgctcgacc tcgtcgacgc ttgtatcgac
     1861 gatgcgcaaa cgttgctgat tgctacgtac atcgaaggat tgaaggatgc g
//
LOCUS       DATGBK010001344         2251 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_62597, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001344 DATGBK010000000
VERSION     DATGBK010001344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62597"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..479)
                     /locus_tag="VKJ77_18790"
     CDS             complement(<1..479)
                     /locus_tag="VKJ77_18790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HMC47371.1"
                     /translation="MVRRTKEEAAETRNSILDAAERVFFEKGVSRTTLADIALEAGVT
                     RGAIYWHFANKGDLFTAMFDRSLLPLDELVEATLDTKEADPLGRIRDIFIWCMRNIAL
                     DEQRRRVFDILFLKCEFVEDMGPVRERHQTNMREGKEKIERGLRNAVDKGQLPAMLDT
                     "
     gene            928..2202
                     /locus_tag="VKJ77_18795"
     CDS             928..2202
                     /locus_tag="VKJ77_18795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012329143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC47372.1"
                     /translation="MRVERVPFRLISAATAAVILAACGQKPSAPPPQTPEVGIVTIQP
                     TTVPVVSELPGRTSAFLVAQVRARVDGIVLRREFTEGADVKVGQRLYKIDPAPYIAAL
                     NTAKATLAKAQANVITQNALAARYKILVAANAVSKQDYDNAVATQGQAVADVASGKAA
                     VDTAQINLGYTDVVSPITGRTGLSQVTPGAYVQASAATLLATVQQLDPVYVDLTQSSV
                     DGLKLRRDIQEGRLQTSGVNAAKVTLILEDGREYSEAGKLQFSDVSVDQGTGSVTVRA
                     IFPNKDRVLLPGMFVRARIDEGVNDKALVVPQVGVTHDQKGQPTALVVGPDNKVALRQ
                     LVTSGTYGDKWVVDSGLNPGDRVIVQGTEKARPGTTVKPVDAQLPAQAAQPASGAAAG
                     AASGAAPAAADAGASGVAASSNPAPASAASGA"
BASE COUNT          422 a          708 c          682 g          439 t
ORIGIN      
        1 gtgtcgagca tggccggcaa ctggcctttg tcaaccgcat tgcgcaatcc gcgctcgatc
       61 ttctctttcc cctcgcgcat gttcgtctga tgccgctcgc gcaccgggcc catgtcttcc
      121 acgaactcac atttcaggaa caagatgtcg aatacgcgcc ggcgctgctc gtcgagcgcg
      181 atattgcgca tgcaccagat gaagatgtcc cggatccggc cgagcggatc ggcctctttg
      241 gtgtcgagcg ttgcttcgac cagttcatca agcggtaaca ggctgcggtc gaacatggcg
      301 gtgaacaggt cgcccttgtt cgcaaagtgc caatagattg cgccgcgcgt gacgccggct
      361 tccagcgcga tgtcggccag tgtggtgcgc gaaacgcctt tctcgaagaa cacccgttct
      421 gctgcatcga gaatactatt gcgcgtctcc gccgcttctt ccttggttcg tctgaccatt
      481 atttcgtggg ttcctgcttg cctgcccgca gccagtttac tgcggtctta cattgcactg
      541 cagcgacgtc atacatttgt tcatcgcccg ccagcccttc gagacgattc ccctcgcact
      601 gctcttgttc acgtacgatc gtctctttta cgttcgttcg tgaatgtata tacaatacca
      661 tccgtccaac gatagcccaa gcagcactga ccggttaata tccgacacag ctttcattcc
      721 gccgtccgtc cgcgtgcccg tccaagggcg ttgtcagcgg cagccgtaca cagaaacggc
      781 tccaggcgct gcggacgaat gatagtcggg gcactggttt ttgcgcccac tggctactgg
      841 taagcgtctc cagacgctcg tagcggcccg cccgtagaag gcggccgcgc acttatttca
      901 atctcagtct ttgacagagg tcgctccatg cgcgtcgaac gggttccatt ccgcttaatc
      961 agtgccgcga cggctgccgt gattcttgca gcctgcggac aaaaaccatc agcaccgccg
     1021 ccccagacac ccgaagtcgg gatcgtcacc atccagccca ccactgttcc tgtcgtgagc
     1081 gaactgcctg gccgcacgag cgcattcctc gtcgctcagg ttcgtgcacg ggtcgacggc
     1141 atcgtgttgc gtcgcgaatt cacggaaggc gcagacgtaa aggtgggcca gcggctctac
     1201 aagatcgatc cggcaccgta tatcgcggcc ttgaataccg ccaaggcaac gctcgccaag
     1261 gcgcaggcca acgtgatcac gcagaacgcc ctggcggcgc gctacaagat cctcgtcgcg
     1321 gcaaacgcgg tcagcaagca ggactacgac aacgccgtgg cgacgcaagg ccaggccgta
     1381 gccgacgtcg cgtcgggcaa agcggctgtc gacaccgcac agatcaacct cggttatacg
     1441 gacgtagtgt cacctatcac gggccgcacg ggtttgtcgc aggtcacgcc gggcgcttac
     1501 gtgcaggcta gcgccgccac gttgctcgca acggttcaac agctcgatcc ggtttatgtc
     1561 gacctgacgc aatcgagcgt ggacggtctg aagctgcgcc gtgacatcca ggaaggtcgc
     1621 ttgcagacca gcggcgtcaa tgccgccaag gtcacgctga tcctggaaga tggccgcgag
     1681 tattcggaag cgggcaagct gcagttctcc gacgtgagcg tggaccaggg caccggctcg
     1741 gtcacggtgc gcgcgatttt cccgaacaag gaccgcgtgc tgctgccggg catgttcgtg
     1801 cgcgcccgta ttgacgaagg cgtgaacgac aaggcgctgg tggtcccgca agtcggcgta
     1861 acgcatgacc agaagggcca gccgacggcg ctggtggtcg gtccggacaa taaggtggcg
     1921 ttgcgccagc tggtgacctc gggtacctac ggcgacaagt gggtagtgga tagcggcctg
     1981 aacccgggcg atcgcgtgat cgtgcagggg acggaaaagg cgcggccggg tacaaccgtg
     2041 aagcctgtcg acgcacagct tccggctcag gcggctcaac cggcatctgg tgctgctgcg
     2101 ggcgcggcat ccggtgcggc tcccgcggca gcggacgctg gcgcaagcgg cgtggcggct
     2161 tcgagcaatc cggcacccgc atccgcggca tcaggcgcgt agtcaggcgc actaaaaggg
     2221 agcctgtttc atggcaaagt tctttatcga t
//
LOCUS       DATGBK010001345         2686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_293786, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001345 DATGBK010000000
VERSION     DATGBK010001345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293786"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VKJ77_18800"
     CDS             <1..316
                     /locus_tag="VKJ77_18800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006221603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47373.1"
                     /translation="GQLAHGQRQWVEIATVLAQEPELILLDEPAAGMNHEEVLRTAEL
                     IREINKTQAIVVVEHDMQFIRMIARTVTVFSQGEVLVEGSVEKVLSDQRVKDVYLGRR
                     AA"
     gene            313..1026
                     /locus_tag="VKJ77_18805"
     CDS             313..1026
                     /locus_tag="VKJ77_18805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017522753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47374.1"
                     /translation="MSEALFEVSHLSSGYGRIPILNQVSFSVKAGERVGILGHNGMGK
                     TTLLRTLTGHLPTTSGHVRFDGKDITGFSPTARAKAGIGYVPQGREIFPALSVMENLR
                     VGCLLSTRSEAETIAEILDLFPRLKAYLDRPGGALSGGEQQLLALARCLCGGPRIILL
                     DEPTEGIQPSIIDEIADTLKAVAQTRSLTVLLVEQNLNFIASLSDRILILQKGAVTRE
                     IPPEVVRDPAMLDEFAGIA"
     gene            1034..2626
                     /locus_tag="VKJ77_18810"
     CDS             1034..2626
                     /locus_tag="VKJ77_18810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019657228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HMC47375.1"
                     /translation="MIKNRPVLSTLSDSTAMNPTSANIDVLELTVAQIQAAFDSGTMT
                     SEALTSAYLERIAQVNPRYNAIIFLNPEALDDARAIDRRRAEGAMLGPLGGIPVVVKD
                     TMDMVGFPTTGGWSLLYSQAGGVDLLPGTDSPVVARIRAAGCVILGKTNVPVLSATGS
                     HANDSWAGPTLNAVDPAFMPGGSSAGTATAVAASLAVLGLAEETGGSIQNPASAQALV
                     GIKPTFALVPNAGVMPLAGSTRDVVGPIARCVRDAALVLDVLAGYSEEDPKTVAGVGM
                     KPRGGYAAGLKTDALQGRRLGLYGPGWRNRALSPETELLYQRAQSELEARGAVVVPDP
                     FAGTDFASLGRPAPGSDHFDARGMESLPHDMQKYLERLGPAAALKTWGQFVAATRAED
                     PFSPTGVLTYMSSLPNFEASLRDPSAPPVTAAFFALRETYLAIFEDVMEQHALDGLVF
                     PQLRDALPPREGTETLHETTVCEINIAGLPGVTVPAGYYESGSPFNLIFVGRRWSEPA
                     LLAMAYDYETATGHRRSPTLRL"
BASE COUNT          487 a          846 c          848 g          505 t
ORIGIN      
        1 cggtcaactc gcacatggtc agcggcaatg ggtggagatt gccaccgtgc ttgcacagga
       61 acccgaactg attctcctcg atgaacccgc tgccggcatg aaccacgaag aggtgttgcg
      121 caccgccgag ctgatccgcg aaatcaacaa gacccaggca attgtggtgg tcgagcacga
      181 catgcaattc atccggatga tcgcgcgtac cgtgacggtt ttttctcaag gcgaagtgct
      241 ggtggaaggg tccgttgaaa aggttctctc cgaccagcgt gtgaaggacg tctatctggg
      301 caggagggcg gcatgagcga ggcgttgttt gaagtcagcc acctgtcgtc aggttatggc
      361 cgaatcccta tcctcaatca ggtcagtttt tccgtgaagg cgggtgagcg agtgggcatc
      421 ctcggtcaca acgggatggg caagacgacc ttgctgcgta ccctgacggg tcatctgccc
      481 actacgtcag gccacgttcg tttcgacggc aaggacatta ccggtttctc gccgaccgct
      541 cgcgcgaagg cgggcattgg ttatgtgccg caaggccggg agatttttcc ggcgctgagc
      601 gtgatggaaa acctgcgcgt cggctgtctt ctgtcgaccc gcagcgaggc tgagaccatc
      661 gcggaaatac tcgacttgtt cccgcgcctg aaagcgtatc tcgaccggcc gggcggcgcc
      721 ttgtccggcg gcgaacaaca gttgctcgcg ctcgcgcgct gcctgtgcgg cggcccgcgc
      781 atcatcctgc tcgacgagcc gaccgaaggc atccagcctt ccatcatcga cgaaatcgcg
      841 gacacgctca aagccgtcgc gcaaacgcgc agcctgactg tgctgcttgt cgagcagaac
      901 ctgaatttca tcgcgtcgct gtccgaccgg atcctcatct tgcagaaggg cgccgtgacg
      961 cgcgagattc caccggaggt tgttcgcgat ccagcgatgc tcgatgaatt cgcgggtatc
     1021 gcttgaagtt gccgtgatca agaaccgccc ggtcctttcc actctgtccg actcgaccgc
     1081 catgaacccg accagcgcaa acatcgacgt cctcgaactg accgtggccc agatccaggc
     1141 cgcgttcgac agcggaacaa tgacctcgga ggcgctgacc agcgcttacc ttgagcgcat
     1201 tgcacaggtt aacccgcgct ataacgcgat catttttctg aacccggagg cgctcgacga
     1261 cgcacgtgcg atcgatcgcc ggcgagctga gggcgctatg ctcgggccgc ttggcgggat
     1321 tccggttgtc gtcaaggaca ccatggacat ggtgggtttc ccgacgaccg gcggctggtc
     1381 gctgctctac agccaagcgg gaggcgtcga tcttttaccc ggcaccgatt caccggtcgt
     1441 cgccaggata cgggcggcgg gctgcgtgat tctcggcaag accaatgtgc ctgtcctcag
     1501 cgctacgggt tcgcatgcca acgatagctg ggccggcccg accctgaacg cggtcgatcc
     1561 ggctttcatg cccggcggca gcagcgccgg aacggcaacg gcggtggccg cgagcctggc
     1621 cgtcctcggc ctggcggaag agaccggcgg gtcgatccag aaccctgcat cggcccaggc
     1681 gctagtgggc atcaagccga ccttcgcgct ggtaccgaac gcgggcgtga tgccgcttgc
     1741 cggaagcacg cgcgatgtgg tcggcccgat cgcacgctgc gtgcgcgatg ctgcactggt
     1801 cctcgatgtc ctcgccggtt attccgaaga agaccccaag acggtggccg gtgtcggcat
     1861 gaagccgcgc ggcggttatg cagcgggcct caaaaccgac gcgttgcagg gacgacggct
     1921 cggcctttac ggtccgggct ggcgtaatcg cgcactgtcg ccggagaccg aactgctgta
     1981 ccaacgcgca cagtccgagc tggaagcgcg tggcgccgtg gtggtgccgg acccgtttgc
     2041 gggcaccgac tttgcgtcgc tcggccgccc cgcacccggt tccgatcact tcgatgctcg
     2101 cggcatggaa agcttgccgc acgacatgca gaaatatctc gaacgtcttg gaccggctgc
     2161 tgcgctaaag acttggggac agttcgtggc ggccacgcgt gccgaagatc cgttttcgcc
     2221 gacgggcgtg ctgacctaca tgtcgagctt gcccaacttc gaagcgagtt tgagagaccc
     2281 gtctgcaccg ccggtcaccg cagcgttttt tgcactgcgc gaaacctatc tcgccatctt
     2341 cgaagacgta atggagcaac atgcactcga tggtctcgtg ttcccgcaac tgagggatgc
     2401 gctgccccct cgggaaggga ccgaaacgct gcacgaaacc acggtctgcg agatcaacat
     2461 cgccggattg ccgggtgtca cggtgcctgc cggttattac gaatcgggct cgccgttcaa
     2521 cctgatcttc gtcggccggc gctggagcga acccgctttg ctggcgatgg cttacgatta
     2581 cgagactgcc accggtcacc ggcgttcgcc cacgttgcgg ctctgagccg gcttgagtgc
     2641 gcagcaatcg accggacacg gccgccctca acggcggtcg gcccgg
//
LOCUS       DATGBK010001346         2095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_339846, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001346 DATGBK010000000
VERSION     DATGBK010001346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339846"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1062)
                     /locus_tag="VKJ77_18815"
     CDS             complement(<1..1062)
                     /locus_tag="VKJ77_18815"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HMC47376.1"
                     /translation="MELAKEAQALERAGRNIIHMGIGEPDFTAPEPVIAAATDALRRG
                     VTQYTNALGLASLREAISGHYRDTFGLDIDPTRIVVTAGASAALLLACTALVDRDDEV
                     LMPDPCYPCNRHFVAATEGRPVLIPSGPAERFQLTAAQVEAHWTPATRGVLLASPSNP
                     TGTSIEPDELAKIVDVVRAHGGFTIVDEIYQGLSYDAKPVSALSLGDDVVTVNSFSKY
                     FNMTGWRLGWLVVPPAMVATMEKLSQNLFICASALAQHAALACFEPATLAIYESRRLE
                     FGRRRDFIVPALRSLGFEVPVVPDGAFYVYADTRHVAHPAAGDSNALTRSMLHDAGVV
                     LVPGTDFGFHAPQDYVRVSY"
     gene            complement(1176..1613)
                     /gene="nusB"
                     /locus_tag="VKJ77_18820"
     CDS             complement(1176..1613)
                     /gene="nusB"
                     /locus_tag="VKJ77_18820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HMC47377.1"
                     /translation="MKSARRRSRELATQGLYQWLLSGAPGGEIDAQLRGAQGFDKADQ
                     EHLDAILHGVIKEADTISAELQPCLDRPLEQLSPVERAVLMVAAFEFKHHLDIPYRVV
                     INEAIELTKTFGGSDGHKYVNGVLDKLAIQLRPTEAQGRGQRS"
     gene            complement(1610..>2095)
                     /gene="ribH"
                     /locus_tag="VKJ77_18825"
     CDS             complement(1610..>2095)
                     /gene="ribH"
                     /locus_tag="VKJ77_18825"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HMC47378.1"
                     /translation="QPNLDGDGLRIGIVQSRFNEPVCNGLVDACTEELERLGVIGEDV
                     LLVTVPGALEIPLALQKLAESGQFDALIALGAVIRGETYHFELVSNESGAGISRIALD
                     FGTPVANAILTTENDEQAVARMTEKGRDAARVAVEMANLSVALEQLGGDDEDEDDEDR
                     A"
BASE COUNT          385 a          656 c          651 g          403 t
ORIGIN      
        1 ataagacacg cgaacatagt cctgcggcgc atggaagcca aaatcggtgc cgggtaccaa
       61 gacgacaccg gcgtcatgca gcatggaacg cgtcaacgcg ttgctgtcgc cggcggccgg
      121 atgcgcgacg tgccgcgtat cggcataaac gtagaacgcg ccgtccggga caacaggcac
      181 ttcgaaacca agcgaacgca gtgccggcac gatgaaatcc cgtctgcgcc cgaattccag
      241 gcgccgcgac tcgtaaatcg cgagcgtggc cggctcgaaa cacgccagcg ccgcgtgttg
      301 cgcgagcgcg gacgcgcaga tgaacaggtt ctgcgagagc ttttccatgg tggcgaccat
      361 cgctggcggc accacgagcc agccgagccg ccagccggtc atgttgaagt acttcgaaaa
      421 actgttcacc gtgaccacgt cgtcgcccag agaaagggca gacacgggct tcgcgtcata
      481 gctcaggccc tgatagatct catcgacgat cgtgaaaccg ccgtgtgcac gcaccacgtc
      541 gacaattttc gcgagttcgt ccggttcaat ggacgtaccg gtcggattgg acggcgatgc
      601 gagcaggacg ccgcgtgtgg cgggtgtcca atgtgcttcg acctgagcgg ccgtcaactg
      661 gaaacgctcg gccggaccgc tcgggatcag gaccggacgc ccttcggtgg cggccacgaa
      721 atggcgattg catgggtagc acgggtcagg catcagcact tcgtcgtcgc gatcgaccag
      781 cgcggtgcac gccagcagca acgcggcgga cgcgcccgct gtcaccacga tgcgcgtcgg
      841 atcgatatcg agcccgaacg tgtcgcgata gtgaccggaa atagcctcgc gcaatgacgc
      901 cagtccgagc gcattcgtgt attgcgtgac gccgcgacgc aaggcgtcag tggcggccgc
      961 gatcaccggt tccggcgccg tgaaatccgg ttcgccgatg cccatatgaa tgatgttgcg
     1021 gcctgcccgt tcgagcgcct gcgcttcttt ggccagttcc attacataga acggctcgat
     1081 ggcgtcaacg cgggcggcgt accggatggc gtcgcgcggg atagctgcgt tcaacggttc
     1141 ttttgcgaag ttcatgaatt ggacaggccg ttcgctcagc tgcgttgccc gcggccttgc
     1201 gcttccgtcg gccgtaactg gatggcaagt ttatccagca cgccgttcac gtatttgtgg
     1261 ccgtcggagc cgccgaacgt cttcgtcaat tcgatcgctt cgttgatcac cacgcggtac
     1321 ggaatgtcca ggtgatgctt gaactcgaac gcggcgacca tcaacaccgc acgttcgacc
     1381 ggcgaaagct gttcgagcgg acggtcgagg cacggctgca attcggcgga aatggtgtcc
     1441 gcttccttga tcacgccgtg caggatggcg tccagatgtt cctggtcggc tttatcgaag
     1501 ccttgcgcgc cgcgcaactg cgcgtcgatc tcgccgccgg gcgcgcccga cagcaaccat
     1561 tggtaaagcc cttgtgtcgc gagttcgcgc gagcgtcgtc gagcgctttt catgcacggt
     1621 cctcgtcgtc ttcgtcttca tcgtcgccgc cgagttgttc cagcgcgacc gacaaattcg
     1681 ccatttccac tgccacgcgt gctgcgtcgc ggcctttttc cgtcatgcgg gcaacggctt
     1741 gctcgtcgtt ttccgtcgtc aggattgcat ttgcgaccgg cgtgccgaaa tcgagcgcaa
     1801 tccgggaaat gcccgcgccg ctttcattcg ataccagctc gaagtggtac gtttcgccac
     1861 ggattaccgc gccgagcgcg atcaaggcat cgaactgacc cgattcagcc agcttttgca
     1921 gcgccagcgg aatttccagt gcgcccggca cggtgacgag cagcacgtct tcgccaatca
     1981 cgccgagccg ttcgagttct tccgtgcagg cgtccacgag gccgttgcag accggttcgt
     2041 tgaaacgcga ttgcacgatg ccgatgcgca gtccgtcgcc gtcgaggttc ggttg
//
LOCUS       DATGBK010001347         2929 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_15682, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001347 DATGBK010000000
VERSION     DATGBK010001347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2929
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15682"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..604
                     /locus_tag="VKJ77_18830"
     CDS             <1..604
                     /locus_tag="VKJ77_18830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011880871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC47379.1"
                     /translation="VDQLLPRLEKAFGSVKVGSPVDSDTLVGPLIDRAAFDGMQKALG
                     DAREQGGNVKGGERVEVGGHADAYYVRPAFVRMPAQTAVVERETFAPILYVMTYNDFA
                     EALQLQNGVPQGLSSAIFTNDIREAEQFMSAAGSDCGIVNVNIGTSGAEIGGAFGGEK
                     ETGGGRESGSDAWKGYMRRATNTINYSRELPLAQGVKFDV"
     gene            915..1991
                     /locus_tag="VKJ77_18835"
     CDS             915..1991
                     /locus_tag="VKJ77_18835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47380.1"
                     /translation="MSFLVLDKLTKAYGDLNAVSDVSLSVEKGEFVSLLGPSGCGKTT
                     TLQMIAGFIDVTRGRISLDGKDITHVRPNKRGLGVVFQSYALFPHMTVAQNVGFGLEM
                     RGVGKAECAERIRETLALVRLDALAARYPRELSGGQRQRVAIARALVIKPPVLLLDEP
                     MSNLDAKLREEMQFELRGIQRKVGTTTVMVTHDQSEALSISDRVVVMEAGRVTQVDSP
                     YRAYERPENRFVSQFIGKANMLAGKVTEARHNEVHVDLGHDLTGIACIDAGTVWREGD
                     TVTLCIRPEKLHLCEVGTGRLTATVTSRFFLGSQWLYRVDTAIGEVMVCSQNEGTEPV
                     AEGAMVGIDWHRDAVRVIQEASHG"
     gene            1984..2898
                     /locus_tag="VKJ77_18840"
     CDS             1984..2898
                     /locus_tag="VKJ77_18840"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47381.1"
                     /translation="MASTIDSTGSDNSSALKNDRAPWHAFVPPWLMSLPAFILFAVLV
                     LTPLAMTVVLTFYRFDPASGPIAAFQFGNYIEVLTDSYYQTIFARTFGIAILTTLLCV
                     AIGAPEAYVLYRMRDPWRSMFLLVILAPLLVSVVVRAFGWSMLLNTGGIVNQLFGLFG
                     LGPYKLEYTTFAIVIALVHVMLPFMVIPVWTSLQKLDPQVENAALSLMASPATTLRRI
                     VLPQIAPGILSGSLMVFGLSASAFAIPGLLGGRRLKVAATAVYDEFLGSLNWPLGATI
                     AILLLVANLVIMITYYRLLERRYSRSLG"
BASE COUNT          526 a          831 c          932 g          640 t
ORIGIN      
        1 agtcgaccaa ttgttgccgc gtctggaaaa agcgtttgga tcggtgaaag tgggcagccc
       61 ggttgattca gatacgcttg tcggtccgct gatcgaccgt gctgcgttcg acggtatgca
      121 gaaggcattg ggcgatgccc gcgagcaagg cggcaatgtg aagggcggtg agcgtgtgga
      181 agtaggcggc cacgccgatg cgtattacgt gcgtccggca ttcgtacgca tgcctgcaca
      241 aacggctgtg gtcgaacgcg agaccttcgc gccgatcctc tacgtgatga cctacaacga
      301 cttcgctgaa gcgttgcaac tgcaaaacgg cgtgccgcag ggtttgtcgt cggcgatctt
      361 cacgaacgac attcgcgaag ccgagcagtt catgtcggcg gccggcagcg attgcggcat
      421 tgttaacgtg aacattggca cgagcggcgc tgagattggc ggcgcgttcg gcggtgaaaa
      481 agaaaccggc ggtggccgcg aatcgggttc cgatgcatgg aagggttata tgcgccgcgc
      541 gaccaacacg atcaactaca gccgtgaatt gccgcttgcg cagggcgtga agttcgacgt
      601 ttgatccgaa cttgaagtag atgtaaaacg aggtctaaat ccgacgtccc accccgacgt
      661 cgactccttt cgcccgatac gcacgccaac cgcggtgtgt gccaagcggg cgaaaggctt
      721 ccgcggtcat ccccggttgt tgcgctgcaa tctgtcctgc tcgaatctgt ccttgtccta
      781 ttaggcgcct ctgaatcagc ggtgcgttcc gcctgttccg cctgttccgc ctgtttacgt
      841 gctgcttttg cgttgctgtt gcgtcaatac cccacgtccg ttcaactgtt tttcgctaga
      901 ccctggaggc caccgtgtcg tttctcgtgc tggacaaact gacaaaagcc tacggcgacc
      961 tgaacgccgt gagcgacgtg agcctctcgg ttgaaaaagg tgaattcgtc tcgctgctgg
     1021 ggccttcggg ctgcggcaag acgacgacgc tgcaaatgat cgcgggtttt atcgatgtaa
     1081 cccgcgggcg gatttcgctc gacggcaagg acatcacgca tgtgcggccg aacaagcgcg
     1141 gcctgggcgt ggtgttccag agctacgcgc tgtttccgca catgacggtc gcgcagaacg
     1201 ttggcttcgg gctcgaaatg cgcggtgtcg gcaaagccga atgcgcggag cggattcgcg
     1261 agacgttggc gctcgtgcgg ctcgatgcgc tcgcggcgcg ttatccgcgt gaactgtcgg
     1321 gcggccagcg gcaacgcgtt gcgattgcac gtgcgttggt gatcaagccg ccggtattgc
     1381 tgctcgatga gcccatgtct aatctcgacg ccaaactgcg cgaagagatg cagttcgaat
     1441 tgcgcgggat tcagcgcaag gtcggcacca ccacggtgat ggtcacgcac gatcaatcgg
     1501 aggcgctgtc catcagtgac cgcgtggtcg tgatggaagc ggggcgcgtg acgcaggtcg
     1561 actcgccgta tcgcgcgtat gagcggccgg agaatcgttt tgtgtcgcag ttcatcggca
     1621 aggcgaacat gctggcgggt aaggtgaccg aggcgcgtca caacgaagtg catgtggatc
     1681 tcggacacga tctgaccggc attgcctgca ttgacgcggg cactgtgtgg cgcgaaggcg
     1741 atacggtgac cttgtgcatc cgtccggaaa aactgcactt gtgcgaggtg ggaacggggc
     1801 gcctcacggc cactgtcacc agccgctttt tcctgggtag ccaatggctt tatcgcgtcg
     1861 atactgctat tggcgaagtg atggtctgta gccagaacga aggtacggag ccggtagccg
     1921 aaggcgcgat ggtcggcatc gactggcatc gcgatgccgt gcgtgtgatc caggaagcga
     1981 gccatggcta gtaccatcga ctcgacgggt tccgacaata gcagcgcgct gaagaacgac
     2041 cgcgcgccgt ggcacgcatt cgtgccaccc tggctgatga gcttgcctgc gttcatcctg
     2101 ttcgcggtcc tggtgctgac gccgctcgca atgaccgttg tgctgacgtt ttatcgcttc
     2161 gatccggcga gtggtccgat cgccgcgttc cagttcggca actatattga agtgctgacg
     2221 gacagctact accagaccat ttttgcgcgc accttcggca tcgctatcct gacgaccttg
     2281 ttgtgcgttg cgatcggtgc gcctgaagct tacgtgctgt accgcatgcg tgatccgtgg
     2341 cgctcgatgt tcctgcttgt gatcctcgca ccgttgctcg tgtcagtcgt ggtgcgcgcg
     2401 ttcggctgga gcatgttgct caacacgggc ggtatcgtga atcagctctt cggcctcttc
     2461 gggctgggtc cgtacaagct ggagtacacc accttcgcga ttgtgatcgc gctcgttcac
     2521 gtcatgctgc cgttcatggt gatcccggtc tggacctcgc tgcagaagct tgatccgcag
     2581 gttgaaaacg cggcgctttc gctgatggcc tcgccggcga ccacgttgcg acgcatcgtg
     2641 ttgccgcaga tcgcaccggg cattttgtcg ggcagcttga tggtattcgg cttgtcggcg
     2701 agtgcgtttg cgattcccgg cctgctcggc ggccgtcgcc tgaaagtagc ggccaccgct
     2761 gtctacgatg aattcctcgg ctcgctcaac tggccgctcg gcgcgaccat cgcgatcctg
     2821 ttgctggtcg cgaacctcgt gatcatgatc acgtactacc ggcttctgga gcgtcgttac
     2881 tccagaagcc tcggttaagc aaaggagacc gctgcaatgc gaaagaacg
//
LOCUS       DATGBK010001348         3035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_247319, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001348 DATGBK010000000
VERSION     DATGBK010001348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247319"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(301..984)
                     /locus_tag="VKJ77_18845"
     CDS             complement(301..984)
                     /locus_tag="VKJ77_18845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009665167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HMC47382.1"
                     /translation="MKPYIVCHMMSSVDGRSLTDGWHLDFASDLYENTAGTFEADGWI
                     CGRVTMQEIAHGEGYPRGLAKQPVPRTNHFAQRDADQYAISIDPKGLVEWKSNTALKS
                     HVIEVVTEQVSDDFLAYLQSIGVSYVFGGRTDIDLAEVVNTLERELGVKKLIVEGGSH
                     VSGAFVNAGLVDEVSVLILPLVDGRSEHPSSFEVAMDAWKQPAYLALTSVEQMAHDAV
                     WLRYTRKTS"
     gene            1155..2066
                     /locus_tag="VKJ77_18850"
     CDS             1155..2066
                     /locus_tag="VKJ77_18850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47383.1"
                     /translation="MDLKQIHYFIALFEDGSVTRAAKRLNIVQPALSMQISKLEAELH
                     QPLFERGPHGMTPTEAARLMYRLYVPIIRDIEHAREQLSRSDVIVTGRVALGMVSSEA
                     ESVLPESLATFNALFPQVEVSVADGFSAQLIDAVEAGRLDAAVINKPRGRLSLDTRSL
                     LDEEMVLVTSVIHGRPMPEAIDLAELGDLELVLPTRRNGLRGVLDAALLNADIVIQPK
                     FEIDLLNTIVQFVEQSKVATILPRVVVQRKVDDGLLRAYRIASPVIVRHIVCVSHPKR
                     PLGAATNALIEIITDNIRRVTTTAPPA"
     gene            complement(2091..>3035)
                     /locus_tag="VKJ77_18855"
     CDS             complement(2091..>3035)
                     /locus_tag="VKJ77_18855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014971886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47384.1"
                     /translation="THTIGTESVAPKYRGAVSGLIGGGGAGLGALLASIVFLTMSSIF
                     PGALFDVWGWRCMFFTGIISSVLGLFVFNSLEESPLWKKLAAEKAAKAAARDISAPVE
                     VIRSPIKTLFSRDYRGILFVNLLLTIGGGSGYYLTSGYLPTFLKVVSRVPNGAAAAIL
                     MIASVGVLVASVAAGHLSTFIGRKTAFIWIGLVRLIALPALFLLLPTAQSITMIGVYA
                     VVLSALGSAGYAPILIFLNERFPTAIRATGTGLSWNIGFAIGGMMPTAVSLVAKDPSE
                     LPMTLAIFVGVISVIFLVGAFIVPETLGKLENRSPQVA"
BASE COUNT          638 a          952 c          882 g          563 t
ORIGIN      
        1 atcgcttgcg gcggctgcgc gagcagtaac ggcggattcc ccctccaata caccgacagc
       61 ctcatcgatt cgtggttgtt gaaaataggc gtggaggtgg ttctggttct ttgcgcgata
      121 gtcgcttatc gtcgattgag ccgccgttat tactgactcg acgggcgcct tacacgatga
      181 aacgcgcagt cgatcgcgca cctgctcgta gtagaccggc ctcacttcac tgtcgatata
      241 caagcaatcc gctagggccg acaagggcta tccaggatct caccgcgtgg ccgttcctct
      301 ttagctcgtt ttgcgcgtat agcgcagcca gaccgcgtcg tgagccatct gctcgactga
      361 tgtaagagcc agatacgcgg gctgtttcca tgcgtccatc gccacctcga atgaggacgg
      421 atgttcgctg cggccatcca cgagcggaag gatcagcaca ctcacctcat ccaccagacc
      481 ggcattcacg aatgcgccgc tcacgtgcga gcccccttcc acgatcagct tcttcacacc
      541 cagctcgcgc tcaagcgtat tgactacctc agccaggtcg atatccgtcc tgccgccgaa
      601 aacgtatgaa acgccaatcg actgaagata ggcgaggaag tcgtcggaga cctgctccgt
      661 caccacttcg atcacgtgcg acttcaacgc ggtattcgac ttccattcaa ccagtccctt
      721 cggatcgata gaaatggcgt actgatccgc gtcgcgttgg gcgaagtggt tcgtgcgagg
      781 aaccggctgc ttcgcgaggc ccctcggata accttctccg tgcgcgattt cctgcatcgt
      841 gacgcggccg caaatccagc cgtcagcttc aaaggtgcca gccgtgtttt cgtagagatc
      901 agacgcgaag tcgagatgcc agccgtcggt gagactgcgg ccatcgacgg aagacatcat
      961 gtggcaaaca atatagggct tcatgggcgt ggtcttggca ttgggggaaa ccgagcaatg
     1021 cagcaagtag cgttccgcgc cgccctctaa gaaggggggg cgaaatcctt gtgaaatcca
     1081 gaacgcgcta gcatcggggc gatgcttgtg gtctcattcg tcctttggat cgcacggata
     1141 acgcgctgcc gttcatggac ctgaagcaga ttcactattt catcgcgctg ttcgaagacg
     1201 gctcggtcac gcgtgcggcg aagcggctca acattgtgca gccggcgctg agcatgcaga
     1261 tatcgaagct tgaagcagag cttcaccaac cgctgttcga gcgcggaccg cacggcatga
     1321 cgccgaccga agccgcacgg ctgatgtatc ggctatacgt acccatcatt cgcgatatcg
     1381 aacacgcccg cgagcaactc agccgcagcg acgtgatcgt cactgggcgc gtggcgctcg
     1441 gcatggtgtc gtcggaagcg gagagcgtgc tgcccgaatc gctcgccacc ttcaacgcgc
     1501 tgtttccgca agtggaagtg tcggtggcgg acggcttcag tgcgcagttg attgatgcgg
     1561 tcgaggccgg ccgactggat gccgcggtca tcaacaagcc gcgcggccgt ctctcgctcg
     1621 acacgcgttc cttgctcgac gaggagatgg tattggtcac cagcgtcatt cacggacggc
     1681 cgatgcccga ggccatcgac ctggctgaac tcggcgatct ggaactcgta ctgcccaccc
     1741 gccgcaacgg cctgcgcggc gtgctggatg cggcgcttct caacgcggat atagtaatcc
     1801 agccgaagtt tgaaatcgat ctactgaaca caattgtgca gttcgtcgaa caaagcaagg
     1861 tggcgaccat cctgcctcgt gtcgttgtcc agcggaaagt ggacgacggc ctgctgcgcg
     1921 cttaccgcat tgcctctccg gtaatcgtgc ggcatatcgt gtgcgtgagt cacccgaagc
     1981 ggccgcttgg cgccgcgacg aacgcgctca ttgaaatcat caccgacaac atccgtcgcg
     2041 tcaccacgac ggccccgccc gcctgaatcg agggttcacg ctcaaaaacc ttaggccacc
     2101 tgcggcgaac gattttcgag cttgcccagc gtctccggca cgatgaacgc acccacaaga
     2161 aagatcacgc tgatcacgcc gacgaagatc gccagcgtca tcggcaactc gctcgggtcc
     2221 ttcgccacca gcgagacggc ggttggcatc atgccgccga tcgcaaagcc gatattccac
     2281 gacaaccccg ttccggtcgc acgaatcgcg gtcgggaagc gctcgttcag gaagatcagg
     2341 attggcgcat aacccgcgct gccaagtgcg ctcagcacga ctgcatagac accgatcatc
     2401 gtgatgcttt gcgcggtggg caacagcagg aacaacgcag gcagcgcgat caggcgcacc
     2461 agtccgatcc agatgaacgc cgtcttgcgg ccgatgaacg tgctcaggtg ccccgctgcc
     2521 accgacgcaa cgagtacgcc cacgctcgcg atcatcagga tggcagcggc cgcgccgtta
     2581 ggcacgcggc tgaccacctt gaggaaggtc ggcaggtaac ccgaggtcag gtaataaccg
     2641 ctgccgccac cgatcgtgag cagcaggttg acgaacagaa tgccgcgata gtcccgcgaa
     2701 aacagcgtct tgatcgggga tcggatgact tccaccggtg cggagatatc gcgtgctgcg
     2761 gcctttgcgg ccttctccgc cgccagcttt ttccacagcg gcgactcctc aaggctattg
     2821 aacacgaaca gcccaagcac cgaactgatg atcccggtga agaacatgca acgccagccc
     2881 catacgtcga agagcgcgcc cggaaagatc gacgacatgg tcaggaatac gatggaagcg
     2941 agcaaggcgc ccaggcccgc accgccgccg ccgatcaggc cggacaccgc gccgcgatac
     3001 ttcggcgcaa ccgattccgt accgatggta tgcgt
//
LOCUS       DATGBK010001349         1536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_271074, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001349 DATGBK010000000
VERSION     DATGBK010001349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271074"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..436
                     /locus_tag="VKJ77_18860"
     CDS             <1..436
                     /locus_tag="VKJ77_18860"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HMC47385.1"
                     /translation="KSRELQQKDDKYGGYVAYATPAVDYIDALRQRTIMVAAMREAFG
                     KYDAIVTPTLPTVAYPVGVAFDKAYPKFPGGPDLIAPGNLAGLPALTVPNGIADKELP
                     SSIAFLGTAFGEAQLTLIGKKYQQITAHHHLRPSLRAQKPTG"
     gene            complement(426..926)
                     /locus_tag="VKJ77_18865"
     CDS             complement(426..926)
                     /locus_tag="VKJ77_18865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47386.1"
                     /translation="MKSSVSAAAALSILVAVASPAAAQKVADSICPRANAAISALVAL
                     KDQTDPVKNADVLLPVVNAYKSCRQLALADGAIEPAAHYDEVRASQYLISLGRQYYAM
                     QKYDEAHAAWTEARQVSQDIVDWLPTSRHNTGMSHSQYHDAAVDIVKAADLELARLAP
                     ATKPSP"
     gene            complement(1011..>1536)
                     /locus_tag="VKJ77_18870"
     CDS             complement(1011..>1536)
                     /locus_tag="VKJ77_18870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47387.1"
                     /translation="VFAAAVYASESAAFAQAVVNSVSDAICPAAIAQIKTLSALGPTG
                     DPGKISDAARSVVQTYNACTVTARAGGALEPYMHYDEVRAAQYGILLGRALFAQKDYD
                     GAHAAFVEARRLSTEVAQWVPPSMGYTMNNESGSSVIRNGSGIKSRFYDTAVDIRKAA
                     DVELAKLVPATPAQ"
BASE COUNT          288 a          465 c          461 g          322 t
ORIGIN      
        1 caagtcgcgc gaactccagc agaaggatga caagtacggc ggctacgttg cgtatgcaac
       61 gccggctgtc gattatattg acgcgctgcg tcaacgtacg atcatggttg cagcgatgcg
      121 cgaagcgttc ggcaaatacg acgccatcgt gacgccgacc ctgcccaccg ttgcgtatcc
      181 agtgggcgtt gcgttcgata aagcctaccc gaagtttccg ggcggacccg atttgattgc
      241 gccgggcaac cttgccggtt tgcccgcgtt aaccgttccc aacggcatcg cggataagga
      301 gctgccctcc tcgatcgcgt tcctcggcac ggcttttggt gaggcgcagc tcacgctcat
      361 cggcaagaag tatcagcaga taacggcaca ccatcatctg cgaccatcgc tacgggcgca
      421 aaaacctacg ggctaggttt cgttgctggg gcgagtctcg cgagctcaag gtctgccgct
      481 ttgacgatat caaccgcggc gtcgtgatat tgcgagtggc tcattcccgt attgtgacgc
      541 gaggtcggca gccagtccac gatgtcttgg ctgacttgcc gggcttcggt ccacgccgca
      601 tgcgcttcgt cgtatttctg catggcatag tattgccggc ccagcgatat gagatactgc
      661 gacgcgcgaa cctcgtcgta gtgcgcggcc ggctcgatcg cgccgtccgc caaggccagt
      721 tgccggcacg acttataggc attgacgacg ggcagcagca cgtcggcgtt tttgaccggg
      781 tcggtttgat ctttgagggc aacaagtgcg gaaatagcgg cattcgcacg cggacaaatc
      841 gagtcggcca ccttttgtgc cgccgccggc gacgccacgg cgacgagaat actcagcgcg
      901 gccgcagcag atacggagct tttcatgggc gatctccgag aagatgaagt gcccgaggct
      961 tcgcgccaag tcccaggttt cccagtcttc cgcccttgtg cagccgctaa ctactgcgcc
     1021 ggcgtagccg gtacgagttt tgccaattct acgtcggccg ccttacggat gtcgacggcg
     1081 gtatcgtaga atcttgactt aatccctgat ccatttctta tcactgagga acctgactcg
     1141 ttgttcatcg tgtaacccat cgagggcggg acccactggg caacttcagt gctgagccgg
     1201 cgggcttcga caaatgcggc gtgggcgccg tcgtagtcct tttgcgcgaa gagcgcccgg
     1261 cccaagagaa tgccgtattg tgcggcgcgc acttcgtcgt aatgcatgta cggttcaagc
     1321 gcgccacccg cccgcgccgt caccgtgcac gcgttgtacg tttggacaac gctgcgtgcg
     1381 gcgtcgctaa ttttccccgg atcgccggtg ggaccgagcg cagagagcgt ttttatttgc
     1441 gcaattgcag ccgggcagat cgcatcgctc acgctattta ccacggcctg cgcgaacgcc
     1501 gcggactcgc tagcgtaaac ggcagctgca aaaacg
//
LOCUS       DATGBK010001350         1921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_339868, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001350 DATGBK010000000
VERSION     DATGBK010001350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339868"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VKJ77_18875"
     CDS             complement(<1..279)
                     /locus_tag="VKJ77_18875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HMC47388.1"
                     /translation="MIIDCHGHYTTSPREHEAWRAAQIAALKDGTSPPPRPVITDEQI
                     RDSIEAGQLRIQRERGTDLTIFSPRAAGMGHHLAGADANAHWSQESNNL"
     gene            complement(300..1628)
                     /locus_tag="VKJ77_18880"
     CDS             complement(300..1628)
                     /locus_tag="VKJ77_18880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47389.1"
                     /translation="MIDPIESATMRRVYGRLMPLLFAMMFFNYLDRINIGFAALDMNK
                     QLGLSPAVFGFAGSIFFFGYMLLEVPSNLLLHRVGARRWIARILLTWGAVAAATAFVF
                     NEYSFYVLRFLLGVMEAGFLPGVAVYLTKWFPQRYRARAVGGYIIAGSFSAVLGGPIS
                     TALMTYANGPLGLQGWQWMFIMEGVPAMLLGLLTLRLMTERPADAAWLTDAQKQWLES
                     TLTKEREVLGADKHFSMLRVASDIRVWSLACLFGCALVGVYGLFLWLPQIVKSLGNLS
                     NLEVGFLSAAPPLLGVLGTLVISRSSDRTGDRKKHLAFVYGMSALAIAGSAYAPNPVI
                     AYALLCVTGLFIYAGNPLFWSLASSFRTGAAGAATIALINTVAQFGGLVGPWSIGFVR
                     SATGNFKLALLTIAAFLVVATIIALVMRVTPSEDEIDALPAGESRAGHLH"
BASE COUNT          397 a          576 c          623 g          325 t
ORIGIN      
        1 caggttattg ctttcctgtg accagtgcgc gttggcgtcg gcgccggcca ggtgatgacc
       61 catgcccgca gcccgtggcg aaaagatggt cagatcagtg ccgcgctccc gctgaatgcg
      121 caactgacct gcttcgatgc tgtcgcgaat ctgctcgtcc gtaatgacgg gacgcggcgg
      181 cggggaggta ccgtctttga gcgccgctat ctgggcggcg cgccaggctt catgctcgcg
      241 cggggaggtc gtgtagtgac cgtgacagtc gatgatcatt gcgggtttcc agatcaggtt
      301 cagtgaaggt gtccggcgcg ggactcgccg gccggcagtg cgtcgatctc gtcttccgaa
      361 ggcgtgaccc gcatgaccag cgcgatgatg gttgccacca cgaggaaggc cgcgatcgtc
      421 aggagcgcca gcttgaagtt gcccgtggcg ctgcgcacga acccgatgct ccaggggccg
      481 acgagcccgc cgaactgggc gacggtgttg atgagcgcga tcgtcgcggc accggcagcg
      541 ccggtcctga acgacgaggc gaggctccag aagagcgggt tgccggcata gatgaaaagc
      601 ccggtcacgc acaggagtgc ataggcgatc accgggttcg gcgcataggc gctgcccgca
      661 atagcgagcg cgctcatccc gtacacgaac gcgagatgct tcttccggtc gccggtccgg
      721 tcggagctgc ggctgatcac cagcgtgccg aggacaccga gaagcggcgg ggcggcggac
      781 aagaaaccca cctccaggtt gctcaggttg ccgaggctct tgacgatctg cggcaaccac
      841 aggaacaggc cataaacacc cacgagcgca cagccgaaca aacacgcgag gctccatacg
      901 cggatgtcgc tggctacgcg cagcatcgaa aaatgcttgt cggcgcccag gacctcgcgt
      961 tctttcgtca gcgttgactc gagccactgc ttttgcgcgt cggtcagcca tgcggcgtca
     1021 gcagggcgct cggtcatcag acgcagcgtc aggagaccaa ggagcatggc cgggacaccc
     1081 tccatgatga acatccactg ccatccctgc agaccgagcg gtccattcgc ataagtcatg
     1141 agcgctgttg aaatcgggcc gccgagcacc gccgagaacg agccggcaat gatgtatccc
     1201 ccgaccgcac gcgcgcggta acgctgcggg aaccacttcg tcaggtagac ggccacgccg
     1261 ggaagaaacc cggcctccat gacgcccagc aggaagcgca gtacatagaa gctgtattcg
     1321 ttgaacacga aggcagtcgc ggcggcgacc gctccccacg tcagcaggat gcgggcgatc
     1381 cagcggcggg caccaacgcg atggagcagc aggttgctgg gcacttcaag aagcatgtag
     1441 ccgaagaaga aaatacttcc ggcgaagccg aacacggccg ggcttaagcc gagctgcttg
     1501 ttcatgtcga gcgccgcaaa gccgatattt attcggtcaa gatagttgaa gaacatcatg
     1561 gcgaagagca acggcatgag gcgcccgtag actcggcgca tggtcgcgct ttcgatcgga
     1621 tcgatcatca atgtctcctg ctgtagagcg cccgtaggat cgggcgtcgt tgtggtttgt
     1681 tgttgctacg gtgatgcaac gaagatccga gtgcccgatc agcggccagt gcttacgtgt
     1741 tcgcccagcc gtgaatcgct ctcaggcggc agcttatgca actggtacaa cgacccaatg
     1801 ccggttgaac agctacggca ttactcgatg gtcgttgagc attgctaacg gcctcggccg
     1861 gtaccgatca aagagcgaca ggaatccgta agcaaaggtg ccaggcagcg atgtcccggc
     1921 g
//
LOCUS       DATGBK010001351         3170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_177743, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001351 DATGBK010000000
VERSION     DATGBK010001351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177743"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..768)
                     /locus_tag="VKJ77_18885"
     CDS             complement(<1..768)
                     /locus_tag="VKJ77_18885"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403679.1"
                     /note="catalyzes the transfer of a segment of a
                     1,4-alpha-D-glucan chain to a primary hydroxy group in a
                     similar glucan chain; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching enzyme"
                     /protein_id="HMC47390.1"
                     /translation="MNKRTDDRLLTEGLHPLDIDALVEARHPDPFSKLGLHQTDAGPV
                     VRVLLPGATDVQVLERDSSKPLGTLTQVHPAGLCIGFIDEMQAYRLNIDWHGTPQEVA
                     DTYSFGPVLSDEALNRVSGGDPYAVMECLGSRPVMHGGVAGARFAVWAPNARRVSVVG
                     DFNSWDGRRHPMRLRHSAGVWELFVPGLGAGTRYKYEIVTRDGQTLPLKADPCAMQSE
                     RPPATASVVADAEAIDGYAWTDSEWMNTRGPRQTVNAP"
     gene            complement(761..>3170)
                     /locus_tag="VKJ77_18890"
     CDS             complement(761..>3170)
                     /locus_tag="VKJ77_18890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_process: GO:0000023 - maltose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0005991 - trehalose metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="putative maltokinase"
                     /protein_id="HMC47391.1"
                     /translation="DSERDYLWNTYASDRRARLNLGIRRRLAPLMERDRRRIELINSL
                     LLSMPGTPVIYYGDELGMGDNIHLGDRDGVRTPMQWSSDRNGGFSRADPEQLVLPPVM
                     GSLYGYDAVNVESQSRDPHSLLNWTRKMLTVRRGKQAFGRGAIRFLRPNNRKILAYLR
                     EVEGEPPILCVANLSRAPQAVELDLSEYAGSVPLEMTADSAFPPIGQLTYLLTFPPYG
                     FLWFQLCPGNQRPAWSQAPSEQLPEFVTMVIRAGQTGPTPENVRLLESEVLPSYLSKR
                     RWFASKDKKLLGVRLAALTTIPEAGFAFTEIEADLGDHFERYVLPLTIAWGTETTSPL
                     YMQLALARVRQVRNIGHITDAFAVPNFTYGVLKKLLQRAVVPTVQKSEIRFIPTERLD
                     ALAANFRPGEPPPEIRWLAAEQSNSSLVIGDQIVLKLVRRLVGGIHPEAEMSRHLTKL
                     GYQNTGPLFGEVVRVDPEGVPHTLCILQGFIDNQGDAWNYALDYLRRTVDELALAVDT
                     DDHSMDREKELQGVEGYRKVTGIIGQRLGELHVALALPSDDPAFAPEKASKKDVRGWN
                     DGTHTLLVTALDILAAKLLEFSEHDRAMAQSLLDRRDLLLAAVQKLVPENAAALRIRI
                     HGDFHLGQVLMAQGDAFLIDFEGEPARALEERRKKSSPLRDVAGLLRSLSYASAAAQP
                     TTGNAPQATADRRRALFERLRGHGEEAFLLEYQAAVAASPQPVAGDEATFAALLDLFL
                     IEKAAYEIRYEAANRPTWIGLPLRGLASLASRLLGDTGAPPAPGSRPVDAALKDTSDG
                     NEHE"
BASE COUNT          600 a         1031 c          961 g          578 t
ORIGIN      
        1 aggcgcgttc accgtctgcc tcggtccacg cgtattcatc cactcgctgt cggtccaggc
       61 gtatccatcg atagcctcag catccgccac caccgaagcc gtcgcgggcg gccgctcgct
      121 ctgcatcgcg cacggatccg ccttcaacgg caacgtttgg ccgtcgcgcg tgacaatctc
      181 gtatttgtag cgcgtgcccg caccaagtcc cggcacgaac agttcccaga cgccggcgct
      241 gtggcgcagg cgcatgggat gccggcggcc gtcccacgaa ttgaagtcgc ccaccaccga
      301 gacgcgccgc gcattcggtg cccataccgc aaagcgcgca ccagccacgc cgccatgcat
      361 gaccggccgc gagcccaggc actccatcac cgcatacgga tcgccgccgg aaacgcggtt
      421 caacgcttca tcgcttaaga cggggccgaa cgagtaggtg tcggcgactt cctgcggcgt
      481 gccgtgccaa tcgatattca gccggtacgc ctgcatctcg tcgataaacc caatacacaa
      541 ccccgccgga tgcacctgcg taagcgtgcc aagcggcttg ctgctgtcgc gctcgagcac
      601 ctggacgtcg gttgcgccgg gcaacagcac gcggaccaca gggccggcgt cggtctgatg
      661 cagcccaagc ttcgaaaacg gatcgggatg gcgagcttcg acgagcgcgt cgatatcgag
      721 cggatgcaga ccttcggtca gcagcctgtc gtctgtgcgc ttattcatgt tcgtttccat
      781 cagaggtgtc cttgagtgcg gcgtccacgg gtcgcgagcc gggggcgggc ggtgcgcccg
      841 tatcgccaag caggcggctc gcaagcgacg cgaggccacg caacggcaaa ccgatccagg
      901 tcggacgatt cgccgcttca tagcggattt cgtaggcggc cttttcgatc aggaaaagat
      961 cgagcaaggc ggcaaatgtg gcttcatcgc cggcaacagg ttgcggtgaa gcagccaccg
     1021 ccgcctgata ttcaagcaag aacgcttcct cgccatgacc gcgcaggcgc tcgaacaacg
     1081 cgcgcctgcg atcggccgtt gcctgcggtg cgtttccggt agtcggctgc gcggcggcgc
     1141 tggcatacga caaggaacgc aataagccgg ccacgtcccg caacggactc gattttttgc
     1201 gtcgttcctc cagcgctcgc gcgggttcgc cctcgaagtc gatcaagaaa gcgtcgccct
     1261 gcgccatcag cacctgtccg aggtggaagt cgccgtgaat acggatacgc aatgcagcgg
     1321 cgttttccgg cacgagcttt tgcacggccg caagcagcag gtcgcggcga tcgagcaggc
     1381 tctgcgccat ggcccggtca tgctcgctga actccagcag tttggccgcc aggatgtcga
     1441 gcgccgtcac gagcagcgtg tgcgtgccgt cgttccagcc gcgcacgtcc ttcttcgacg
     1501 ccttttcggg cgcaaacgca ggatcatcgg agggcagggc gagtgcgacg tgcagttcgc
     1561 ccagccgttg cccgatgatc cccgtgacct tcctgtagcc ttcaacgccc tgcaattcct
     1621 tctcgcggtc catcgaatgg tcgtccgtat ccacggccag cgcgagttcg tcgacggtac
     1681 gacgcaggta atcgagcgcg tagttccacg catcgccctg gttgtcgatg aagccttgca
     1741 aaatgcacaa cgtatgcgga acgccttccg ggtccacccg caccacttcc ccgaacaacg
     1801 gccccgtatt ctgataaccg agcttcgtca ggtgccggct catttcggct tccggatgaa
     1861 tcccgccaac aagccgacgc accagtttca gcacaatctg atcgccgatc acgagcgagc
     1921 tgttgctctg ctccgccgcc agccagcgaa tttccggtgg tggttcccca ggcctgaaat
     1981 tggccgcaag tgcgtcgagc cgttcggtcg gaataaagcg aatctcgctc ttctgcaccg
     2041 tgggaacgac cgctcgctgc aagagcttct tcagcacgcc ataggtaaag ttcgggacgg
     2101 cgaaggcgtc ggtgatatgg ccgatattac gaacctggcg cacacgtgcg agcgcgagct
     2161 gcatgtaaag cggcgaggtc gtttcagtgc cccatgcaat cgtgagcggc agcacgtagc
     2221 gttcgaagtg atcgccgaga tcggcttcga tttccgtgaa cgcgaacccc gcttccggaa
     2281 tggtcgtcaa cgcagcgaga cgcacgccga gcagcttctt gtccttcgat gcaaaccagc
     2341 gccgcttgct caggtaagac ggcagcactt ccgattcgag caagcgcacg ttttccggtg
     2401 tcgggccggt ctggccggcg cgaatcacca tcgtcacgaa ttcgggcaat tgctcggacg
     2461 gcgcctggct ccatgccgga cgctgattgc ccggacacaa ctggaaccac aggaaaccgt
     2521 acggcgggaa agtcagcaaa tacgtaagct gcccgatcgg cgggaacgcg gaatcggcgg
     2581 tcatttccag cggcaccgaa ccggcatact cggacaaatc gagctccacg gcctgcggtg
     2641 cgcgcgacag gttcgccacg catagaattg gcggttcgcc ctcgacctcg cgcagatacg
     2701 caaggatttt gcggttgttt gggcgcagga agcggattgc gcctcgtccg aaagcttgct
     2761 tcccgcgacg cacagtgagc atcttgcggg tccagttgag cagcgagtgc ggatcgcggc
     2821 tctgcgattc cacgttcacc gcgtcatacc cgtaaagcga acccatgact ggcggcagca
     2881 cgagttgctc cggatcggcg cgcgagaacc cgccgtttct atccgatgac cattgcatcg
     2941 gcgtacgtac gccgtcgcga tcgcccaagt gaatgttgtc gcccatgccg agttcatcgc
     3001 cgtaatagat cacgggcgtt ccgggcatgg agagcagcag cgaattgatc agttcaatcc
     3061 ggcgccggtc gcgttccatc aagggtgcaa gacgccgccg gattccgaga ttcagccgcg
     3121 cgcggcggtc gctggcgtac gtgttccaca gataatcgcg ctcggaatcc
//
LOCUS       DATGBK010001352         3085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_62645, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001352 DATGBK010000000
VERSION     DATGBK010001352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62645"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>3085
                     /locus_tag="VKJ77_18895"
     CDS             <1..>3085
                     /locus_tag="VKJ77_18895"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HMC47392.1"
                     /translation="LLLDELARRYEGQTATPHPLSWFDYCSWEPQLRASPLFTEARDY
                     WTRKLAPATLRTELPFDSLRRTDNANRSLAVHVRPVQVARLKRIAELHGMTLPPVLFA
                     LYLVWIWRVSGQAQIACAYPNAGRNVAGSEDIYGMFVSMAVLVQGIEPRQTFSELARA
                     VQSQMLDDQDHLLATPYDTDNVQLGSLNTIFSLQNGIDLEGRIGDASYQAEELPSLTS
                     KADLSAIFYVRKDGGLDGRIEYDGSLLHATSIERMAEVFHTLFDSAGQNPSTQVGELG
                     YLSERQRAQCLTFACGDPLPGAPMSIPARFAASVARFPMQEAVRFGDETLTYRELDLL
                     SDRIAHSLAATLVPGARVGLSMRKGTLLVATVIGVLKAGCAYVPLDPDYPPERLRYFV
                     GNCAIETVLADAPSRLALDAAGLAGLRQIDPAELARQVLSDALALAPVAPNALAYVIH
                     TSGSTGKPKGVLVEHHSVVRMVEGAGLALDYTPGSVSTLAASTNFDASVLDIFLALLH
                     GGTLVVLSDEVRRDPIKLHRLLKDERVTFALLAPVVVQSLPREVLPDLRLLAFGGDTI
                     DEPTAAWWAAHTRLFSLYGPTEITVMASCGQVMPDGPNRIIGKPLPGYRLYLLNAHRQ
                     LVPPGTVGEIYIGGENLARGYINQSSMTMERFVVDPFNQAPYALMYRTGDLGRFLPDG
                     TIEYFGRNDAQIKLRGFRIELGEIESCIAAATGVAQAACAVWGEGEQRYLAAYYVAET
                     EAALDEDVLRQHVANALPEYMVPAWFMQLDAIPASSSGKVDRKALPAMRRSTSGSPPH
                     DGVERRIADIWERLLQLHDIGRDDNFFRLGGNSILAVRMQAEAREKLGIDFAMSAFYR
                     SSSIASLAAGQHENMIELAIADAGAQLLINDPAPPLSGETRAARVRSMLLTGATGFLG
                     IYLLDDLVKQVDKVVCLQRCDSATTGKEALRQKAREAGLVIDFSRVEVISADLASPDL
                     GLDSVQWHRLAGEVDAILHCGAFVHHLHGYAEMKRANVGGTESLLRLALTQRQKPL"
BASE COUNT          581 a          930 c          970 g          604 t
ORIGIN      
        1 agctactgct ggacgaactt gcacggcgct acgaaggcca gacggctacg ccgcacccgc
       61 tgtcgtggtt cgactactgc agctgggaac ctcagctcag ggcgtcgccg ttatttacgg
      121 aggcacgcga ttattggacc cgcaagctgg caccggccac gctacgtaca gaattgccct
      181 tcgattcgct gcggcgcacg gataacgcga accgatcgtt agcggtgcat gtcaggccgg
      241 tgcaggtggc gcgcctcaag cggatcgcgg agctgcacgg catgacgtta ccaccggtat
      301 tgtttgccct gtacctggtc tggatctggc gcgtcagcgg gcaagcacag atcgcgtgcg
      361 cgtatccgaa cgccggccgc aacgtcgccg gcagcgaaga tatctatggg atgttcgtgt
      421 cgatggcggt gctcgtgcaa ggcatcgagc cgcgtcaaac gttctccgaa ctcgccaggg
      481 cggtccagag ccagatgctc gatgaccagg atcatctatt ggcgacgcct tatgatacgg
      541 acaacgtgca acttggctct ctcaatacaa ttttcagcct gcagaacggc attgatctgg
      601 agggccggat aggcgacgcc tcgtaccaag ccgaagagtt gccatcgctg acttcgaaag
      661 cggatctctc ggcgattttc tatgtgcgaa aagacggcgg actggatggc aggatcgaat
      721 atgacggctc cctgctgcac gcaacctcta tagaacgcat ggccgaggtg ttccatacgc
      781 tattcgattc tgccggtcaa aaccccagta cccaggttgg cgagttgggt tatctgagcg
      841 agcgtcaacg cgcgcaatgc ctgacgttcg catgcggcga tccgctgccg ggcgcgccga
      901 tgtcaattcc ggcgcgcttt gctgcaagcg ttgcaagatt cccgatgcag gaggcagtcc
      961 gcttcggcga cgagacgctc acctaccggg aactcgacct gctgagcgac cgtattgccc
     1021 acagcctggc ggcgaccctg gtaccgggcg cgcgtgttgg cctgagtatg cgtaagggca
     1081 cgctgctggt ggctacagtg ataggcgtgc tgaaggcggg ctgcgcgtat gtgccgctcg
     1141 acccggacta cccgccagag cgactgcgct attttgtcgg gaactgcgcg atcgaaaccg
     1201 tcctcgccga tgcaccaagc cggctcgcgc ttgacgccgc cggactcgcg ggattgcgtc
     1261 agatcgatcc ggcggagctg gcgagacagg tgctttccga tgcgctcgcg cttgcaccgg
     1321 tcgcgccgaa cgcccttgca tacgtgatcc atacatccgg ttcgaccggc aagccgaaag
     1381 gcgttttggt agaacatcac agtgtggtca ggatggtgga gggcgcaggc ctcgcgctcg
     1441 actacacgcc gggtagcgtc agcacgctgg ccgcttcgac caacttcgac gcgagcgtgc
     1501 tcgatatttt cctcgcgctg ttgcacggcg gcacactagt cgtgctgtcg gacgaggtgc
     1561 gtcgcgatcc gataaaactg caccgcttgc tgaaagatga gcgcgtcacg tttgcgttgc
     1621 tcgcgccggt ggtcgtgcaa agccttcctc gcgaagtgct gcccgatttg cggctgctcg
     1681 cgttcggcgg cgatacgatc gacgaaccga ccgccgcttg gtgggccgcg cacacccggc
     1741 tgttcagtct ctacgggccg accgaaatca ccgtcatggc atcatgcggc caggtgatgc
     1801 cggacggtcc caaccggatc atcggcaagc cgttgccagg atatcgcctc tacttgctga
     1861 acgcgcaccg gcaactggtg cctccaggaa cggtcggcga gatctatatt ggtggcgaaa
     1921 atctcgcgcg cggctacatc aaccagtcgt ctatgacgat ggaacgcttc gtcgtcgacc
     1981 cgtttaatca ggcaccgtat gccttgatgt accggaccgg cgatctcggc cgtttcctgc
     2041 ccgacggcac gatcgaatac ttcggccgca acgatgcgca aatcaagctg cgcgggtttc
     2101 gcatcgagct tggggaaatc gagagctgca tcgcggccgc aactggcgtg gcgcaggcgg
     2161 cctgcgcggt atggggtgaa ggcgaacagc gttaccttgc ggcgtactac gtcgctgaaa
     2221 cagaggcggc tctcgacgaa gacgtcttgc gtcaacacgt ggcaaacgcg ttgccggaat
     2281 acatggtgcc ggcgtggttc atgcagcttg acgcgattcc ggcatcttcc agcggtaagg
     2341 tcgaccggaa ggcgcttccc gcgatgcggc ggtccaccag cggctcgccg ccgcatgatg
     2401 gcgtcgaacg gcggatcgcc gacatttggg agagactgct gcaactgcac gacatcggtc
     2461 gggacgacaa tttcttccgc ctgggcggca attcaattct cgctgttcgg atgcaggcag
     2521 aagcgcgcga gaagctgggt atcgatttcg cgatgtcagc gttctatcga tcgtcgagca
     2581 ttgcttcgct cgcggccggt caacacgaaa acatgattga actcgcgata gccgatgcgg
     2641 gggcgcagct actcatcaac gatccagcgc cgcccctttc cggggagact cgtgcagccc
     2701 gcgtccgttc gatgttgctg accggtgcca ccgggttcct cggcatctat ctgctcgatg
     2761 acctggtcaa acaggtcgac aaggtggtct gcctgcaacg ctgcgatagc gccaccacag
     2821 gtaaggaggc cctgcgccaa aaggcccgag aggcaggcct cgtgatcgac ttttcgcgcg
     2881 ttgaagtgat ctctgccgat cttgcatcgc cggatctggg ccttgattcc gtgcaatggc
     2941 atcggctcgc tggagaggta gacgctattc tgcattgcgg cgcgttcgtc catcacctgc
     3001 acggctatgc ggaaatgaaa cgggcgaatg tcgggggcac cgagagcttg ctgcgcctcg
     3061 cactgacgca acggcaaaag ccgct
//
LOCUS       DATGBK010001353         2503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_271097, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001353 DATGBK010000000
VERSION     DATGBK010001353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2503
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271097"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1313
                     /locus_tag="VKJ77_18900"
     CDS             <1..1313
                     /locus_tag="VKJ77_18900"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HMC47393.1"
                     /translation="SCVDYLGQLMPGLSGTNHPWNHFLLAFSLIAALCILNVIGVRES
                     TTLNGFVSALDVVSETSILFFGFLFAFSPDLLIHSMAFYWPGWDNLLLGTSLAIISFV
                     GLESISQAAQETQRPASIIPRTSIGLILTILVYELAYSNLALGMIPAHPIPLDANHHA
                     QTFFQYLGNSENNGSAVAVLAANVPYFGVVAGFYVPILGAILLLISSNSGVFGASRIA
                     YAMSKSQILPSIFERVQAKYRTPAVSIISFCALAVLVLLFAALPSLDPGVAGFYNRFF
                     HNEAGIAVLADLYAFGAATSYSFVFIALIALRLNDPLSPRKFTIPLNIPMRFRGEAVK
                     FPVVAVVGFIGIFSILIFTMITHEIGRIAGPGWLLGGFIGYLFYRRHKGLPIFRSRKH
                     DWPQQQITILRDAGELELMDELMVNLKKRAGTVPAAEPAEGTPP"
     gene            1310..1525
                     /locus_tag="VKJ77_18905"
     CDS             1310..1525
                     /locus_tag="VKJ77_18905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47394.1"
                     /translation="MMRQPRTLAHYRVRAISGMVFGACAVVVAVELAVKPAPANLKLF
                     AFALPVVMLLLAFVRVRDYLRAKAASK"
     gene            1522..2133
                     /locus_tag="VKJ77_18910"
     CDS             1522..2133
                     /locus_tag="VKJ77_18910"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HMC47395.1"
                     /translation="MTISVHPAGALIALFVAVAIAATIYWMLHPPSSTAEVAAELAEA
                     ALEQMVGSIIVVFAEDIHSEHMMVLAARLARRERADLLAVYIIEVPLILPENASTPEE
                     DRTGLGVLATAEVIAQNNGVHMRSEIIHARLISQAVLDLAKREGAHLIVMGSYREGKY
                     SGAPLGRAIEAIATHAKCDVLIGVPGQHGTVLQTAEEAAAARR"
     gene            2130..>2503
                     /locus_tag="VKJ77_18915"
     CDS             2130..>2503
                     /locus_tag="VKJ77_18915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47396.1"
                     /translation="MKRAIVLAATLAFAASASAAHAGAILDEANAAFAKVNDYTAMIA
                     VHETDGKNADDHVYAYAFKKPTSAKIDVVSGSNKGGGIVWNGGDKVKGHRGGMLSGIH
                     LTLDLHDKQVVSLRGDSIDTGT"
BASE COUNT          498 a          742 c          688 g          575 t
ORIGIN      
        1 ggtcatgcgt cgattatctc ggccaattga tgcccgggct ctccggtacg aaccatcctt
       61 ggaatcattt tcttctggcc ttttcgctta tcgccgcttt gtgcatactc aacgtcatcg
      121 gggttcgtga atccaccacg ctcaacgggt tcgtttccgc acttgacgtg gtgagcgaaa
      181 cgtcgatcct gttcttcggg tttttgtttg cgttcagtcc cgatctgctc atccactcga
      241 tggcatttta ttggcccggc tgggacaact tactcttagg cacctcgctt gcgatcattt
      301 cgttcgtagg gctggagtcg atttcgcagg cagcacaaga aacgcagcgc cccgcttcca
      361 tcataccgcg cacctcaatt ggtctgatcc tcacgattct cgtctatgaa ctcgcctact
      421 cgaatcttgc attaggcatg attccggcgc accccattcc gcttgatgca aaccatcacg
      481 ctcaaacgtt ctttcaatat ttgggcaaca gtgaaaacaa cggcagcgcg gtcgccgtgc
      541 tggcggcgaa cgtgccgtac ttcggtgtcg tcgccggctt ctacgtcccg atcttgggag
      601 cgattttgct gttgatctca agcaactccg gcgttttcgg ggcatcgcgc atcgcctacg
      661 cgatgagcaa gtcgcagata cttccgtcga ttttcgaacg cgttcaggcg aaatatcgca
      721 caccggccgt gtcaatcatc tcgttttgcg cactcgcagt tttagtgttg ctgttcgccg
      781 cgctgccgag cctggacccc ggagtagcgg gcttctacaa tcgctttttt cacaacgaag
      841 ccggtattgc cgtgttggcc gacctctacg catttggcgc cgcgacaagc tactcgtttg
      901 tgttcatcgc gctcatagca ttgcgtctta acgacccgtt gtcgccccgc aaatttacta
      961 ttccactgaa catcccgatg cgtttccgcg gcgaagccgt gaagtttccg gttgtcgcag
     1021 tcgtcggatt catcggcatt ttttcgattc tcatttttac gatgatcacg cacgagatcg
     1081 ggcgaatcgc cggcccgggc tggctgctcg gtggcttcat cgggtatctg ttctatcgcc
     1141 ggcataaggg cttgcccata ttccggtcgc gcaagcacga ttggccgcaa cagcaaataa
     1201 cgattctgcg cgacgcaggc gagcttgaac ttatggacga gctcatggta aatttgaaga
     1261 aacgagccgg caccgttccc gcggcggagc cggctgaggg tactccgcca tgatgcgaca
     1321 gccgcgcacg ctcgcgcatt atcgggtccg cgcaatctcc ggcatggtct tcggcgcgtg
     1381 cgccgttgtg gttgccgtcg agctcgccgt caaaccggct ccggcgaacc tgaagttgtt
     1441 tgcctttgct ctgccggtcg ttatgttgct gctcgcattc gtgcgcgtcc gcgattatct
     1501 gcgcgccaag gctgcatcca aatgaccata agcgttcatc ccgccggagc acttatcgct
     1561 ctttttgtcg ccgtggcgat cgccgcgacg atttattgga tgcttcatcc gcccagttca
     1621 acggcggaag tcgccgccga gctagccgag gctgcgctcg aacaaatggt gggcagcatc
     1681 atcgtcgtat tcgccgagga tatccactcc gagcatatga tggtgcttgc agcacgcctg
     1741 gcaagacgag agcgcgcaga ccttctcgcc gtatatatca tcgaggttcc gctcattctg
     1801 cccgagaatg cctcgacacc tgaagaagat cgtaccggac ttggcgttct tgccacagca
     1861 gaggttatcg cgcaaaacaa cggcgtgcat atgcgcagcg aaataatcca cgcgcgactg
     1921 attagccaag cggttctcga ccttgctaaa cgcgaaggag ctcacttgat cgtgatgggt
     1981 tcatacagag aaggcaaata tagcggcgct ccgctcggac gtgcgattga agctatcgcg
     2041 acgcacgcca aatgcgacgt gctgatcggc gttcccggac agcacggcac cgtgctgcag
     2101 acggccgaag aagctgcggc ggcgcgcaga tgaagcgggc catcgttttg gccgcgacgc
     2161 ttgcatttgc ggcaagcgca agcgcagctc acgcgggcgc gatcctcgat gaagcaaacg
     2221 ccgcgtttgc gaaagttaac gattacacgg cgatgattgc cgtgcacgaa accgacggca
     2281 agaatgccga cgatcacgtg tacgcatacg cgttcaagaa gccgacatcg gcaaaaatcg
     2341 atgtcgtgtc cggcagcaac aaaggcggcg gcatcgtctg gaacggcggc gataaagtga
     2401 agggccaccg cggcggcatg ctcagcggca ttcacctcac actggaccta cacgataaac
     2461 aagtcgtctc gctacgcggg gacagcatcg acacaggcac tat
//
LOCUS       DATGBK010001354         3008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_201481, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001354 DATGBK010000000
VERSION     DATGBK010001354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201481"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1037
                     /locus_tag="VKJ77_18920"
     CDS             <1..1037
                     /locus_tag="VKJ77_18920"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HMC47397.1"
                     /translation="EKSIVNGIVALLATGGSTNHTLHLVAIARAAGIVIDWNDFDELS
                     QAVPLVARIYPNGKADVNHFHAAGGVAYLVRDLLAAGLLHEDVKTVAGEGLKHYTREP
                     KLIDGKLQWVDGTETSHDTKVLRSHKEPFAPDGGLRLMQGKLGRGVIKISAVADAHRH
                     VKAPAIVFESQEDVQAAFDNGELKRDFVAIVRFQGARANGMPELHRLTPLLGVLQDQG
                     FHVALVTDGRMSGASGKVPAVIHISPEALLHGPIGKVRTGDMIVIDANNGVLDVEIDE
                     HEWAAREVEQPKHQAGNEVGFGRELFGVFRAAAMPAELGASVFGPMVGENASCDITEH
                     ASQTTGVAVK"
     gene            1034..1669
                     /gene="eda"
                     /locus_tag="VKJ77_18925"
     CDS             1034..1669
                     /gene="eda"
                     /locus_tag="VKJ77_18925"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008675 -
                     2-dehydro-3-deoxy-phosphogluconate aldolase activity
                     [Evidence IEA];
                     GO_function: GO:0008700 - 4-hydroxy-2-oxoglutarate
                     aldolase activity [Evidence IEA];
                     GO_process: GO:0009084 - glutamine family amino acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HMC47398.1"
                     /translation="MKTVSEIVRLGPVIPVLAFESVEQGENVSRALHAGGVKVLEITL
                     RTAAGLEAIERASHLADDIVVGVGTITKPEHCAQAKKAGAQFGVSPGLTKEIHQAALD
                     CGLPLLPGVMTPTDIIQAMEFGYEIVKLFPAQQAGGVSMLQALNGPFPGLKFCPTGGI
                     TAETAPNFLTLPNVVCVGGSWLTPKAALAAHNWEEVTRLARAASLLAPVKA"
     gene            1923..>3008
                     /locus_tag="VKJ77_18930"
     CDS             1923..>3008
                     /locus_tag="VKJ77_18930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015600646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015295 - solute:proton symporter activity
                     [Evidence IEA];
                     GO_process: GO:0015718 - monocarboxylic acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate:H+ symporter"
                     /protein_id="HMC47399.1"
                     /translation="MEPVHGSMLLVYAVIAIALLILLITRYKVYPFLVLIIVSLLLGL
                     VVGMPMDKIVKAFETGNGNTLGHIAIVVGLGTMLGKMMAESGGAERIANTLIGWFGEK
                     YIHWAMMCVAIIVGLPVFFEVGFVLLIPIAFNVAKRTKKSLLLIGLPMVAGLSVVHGL
                     IPPHPAALLAVQAYHADIGRTIMYGLIVGIPTAIVAGPLFALLIHKYIKLPENNPLAS
                     QFVDTRKEGETRELPGFGITLFTILLPVILMLIGSWADLISTPKTLPNDLLHFFGNSD
                     VALLVAVLFSFWSFGASRGFDRAQIQKFCGDCLAPIAGITLIVGAGGGFGNVLRESGI
                     SQQLVATASAAHLSPLLLGWFVAALIRL"
BASE COUNT          583 a          829 c          961 g          635 t
ORIGIN      
        1 atgaaaaatc gatcgtcaac ggtatcgtcg cgttgctggc gacgggcggg tcgaccaatc
       61 acacgctcca tttagtggcg atcgcgcgtg cggcggggat tgtgatcgac tggaatgatt
      121 tcgatgaact ctcgcaagcc gtgccgctcg tcgcgcggat ctacccgaac ggcaaggccg
      181 acgtgaatca tttccacgcg gcgggcggcg ttgcttatct ggtccgcgat ttgctcgcag
      241 ccggtttgct ccacgaagac gtaaagaccg tcgcaggcga gggcctgaag cattacaccc
      301 gcgagccgaa actcatcgat ggcaaattgc aatgggtcga cggcaccgaa acaagtcacg
      361 acacaaaagt gttgcgcagc cacaaggaac cgtttgcacc ggacggcggc ttgcgcctga
      421 tgcagggtaa gctcggccgc ggcgtgatca agatctcggc ggtggcagac gcacacaggc
      481 acgtaaaagc gccggcgatt gttttcgagt cgcaggagga cgttcaggcc gcgttcgata
      541 acggcgagct caagcgcgat tttgtggcta tcgtgcggtt ccagggcgcg cgggcgaacg
      601 ggatgccgga gttgcaccgg ttgacgccgc ttctcggcgt gttgcaggat cagggcttcc
      661 acgtcgcgct ggtgacggac gggcggatgt cgggcgcatc gggcaaggtg ccggcggtca
      721 tccacatttc gccggaggca ttgctgcatg gtcctattgg caaggtgcgc acgggcgaca
      781 tgattgtcat cgatgcaaat aatggtgtgc tcgacgtcga gatcgacgag cacgaatggg
      841 ctgcgcgcga ggtcgagcag ccgaagcatc aggctggcaa cgaggtcggt tttgggcgcg
      901 aactgttcgg cgtattccgc gcggcggcca tgccggcgga actgggcgca tcggtattcg
      961 gtcccatggt cggcgagaac gcgtcgtgcg acatcacaga acacgcctca caaacaacag
     1021 gagtggcagt caaatgaaaa cggtaagcga aatcgtgcgt ctgggtccgg tgattccggt
     1081 cctcgcattc gagtcggtgg agcagggcga aaacgtgtcg cgcgcgttgc atgcgggcgg
     1141 cgtgaaagtg ctggagatca cgctgcgcac ggcggcgggg ttagaggcta ttgagcgggc
     1201 aagtcatctt gctgacgata tcgtggtcgg cgtcggcacg attaccaagc ccgagcattg
     1261 cgctcaggcg aagaaagcgg gcgcgcaatt tggggtatcg ccgggattga cgaaggagat
     1321 tcaccaggcc gcgctcgatt gcggacttcc gctgctgccg ggcgtgatga cgccgaccga
     1381 catcatccag gcgatggaat tcggctatga aatcgtgaag cttttcccgg cgcaacaggc
     1441 gggcggtgtg tcgatgttgc aggcgctcaa cggtccgttc ccgggcctca aattctgtcc
     1501 gacaggcggc atcaccgccg aaaccgcgcc gaactttctg acgctgccga acgtggtgtg
     1561 cgtgggcgga tcgtggttaa cgccaaaagc ggcgctggct gcgcacaact gggaagaagt
     1621 cacgcgcctc gcacgtgcag caagccttct ggcgcccgtc aaagcgtaag cctgggcttc
     1681 acctgaagtc aggaaacgaa caaaagcctt tgcgtcgcac gtgtcaaacg tgcagcaaag
     1741 gctttttcgc attcgggaac gcttactgcg caggtttcga gcgctgcaag taaaatccca
     1801 tctcaatcac tcgccgtcta cgtgtgcgct tggccgacag catgacccgt tgttcgtcgc
     1861 tcagccgatg gcaaacgcac tcgcagccca aaaaatacgc taacaattga aggaggcgcg
     1921 tcatggagcc agtccacggc agcatgctgc tggtgtacgc cgtcattgcc attgctctgc
     1981 tgattctgct aatcacgcga tacaaggttt acccgtttct cgtactgatc attgtttcat
     2041 tgttattagg tctggtcgtc ggcatgccga tggacaagat cgtcaaggct ttcgaaaccg
     2101 gcaatggcaa cacgctcgga cacattgcca tagtcgtggg cttgggcacc atgctcggca
     2161 agatgatggc ggaatccggc ggcgcggaac gcatagcgaa tacgctgatt ggctggttcg
     2221 gcgagaaata cattcactgg gccatgatgt gcgtggcgat tatcgtcggc ttgccggtgt
     2281 tctttgaagt cggtttcgtg ctgctgattc cgattgcgtt caacgtcgcc aaacgcacga
     2341 agaagtcgct gctgctgatc ggcttgccga tggtcgcggg actgtccgtt gtccacggcc
     2401 tgatcccgcc acaccccgcc gcgttgctcg cggtgcaggc gtatcacgcg gatatcggcc
     2461 ggacgatcat gtacgggttg atagtcggca ttccgaccgc catcgttgcc ggtccgctat
     2521 tcgcgttgtt gatccacaag tacatcaagc tcccggagaa caatccgctg gcgtctcaat
     2581 tcgtcgatac acgcaaggaa ggtgaaacgc gcgaactgcc gggcttcggt attacgttgt
     2641 tcaccatcct gctgccggtg atcctgatgc tgatcggtag ctgggctgat ctgatctcca
     2701 cgccgaagac gcttcctaac gacttgctgc atttctttgg caattccgat gtcgcgttgt
     2761 tggtcgctgt gttgttcagc ttctggagct ttggggcatc gcgcggattc gatcgtgcgc
     2821 agatccagaa attctgcggc gattgcctcg cgccaattgc ggggatcacg ttgatcgtgg
     2881 gcgcgggtgg cggcttcggc aacgtgttgc gcgaaagcgg tatttcccag caacttgtgg
     2941 ctacggcatc ggctgcgcat ttgtcgccgt tgctgctcgg ctggttcgtg gctgcgctga
     3001 tccggctt
//
LOCUS       DATGBK010001355         1624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_201483, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001355 DATGBK010000000
VERSION     DATGBK010001355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201483"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..139
                     /locus_tag="VKJ77_18935"
     CDS             <1..139
                     /locus_tag="VKJ77_18935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutaredoxin domain-containing protein"
                     /protein_id="HMC47400.1"
                     /translation="REEMMTRTGRRTVPQVFIGETHVGGYDDLSALDRKGGLVPLLAT
                     V"
     gene            275..748
                     /gene="secB"
                     /locus_tag="VKJ77_18940"
     CDS             275..748
                     /gene="secB"
                     /locus_tag="VKJ77_18940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HMC47401.1"
                     /translation="MSDDNNQPFFNIQRIYLKDMSLEQPNSPGIFLEQEMPSVEVEVD
                     VKAERLAESVFEVLVTGTVTAKVTDKVAFLIEAKQAGIFDIRNIPADQIDPLVGIACP
                     TILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRISQLSAAQEGVANGATLN"
     gene            773..>1624
                     /locus_tag="VKJ77_18945"
     CDS             773..>1624
                     /locus_tag="VKJ77_18945"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011546282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HMC47402.1"
                     /translation="MQVAVLGAGAWGTALAGHLATRHSTVLWARDRALIESLSQTHKN
                     EHYLRGITLPAALQYDRDLASALAHGAAEDSLCVVAAPVAGLRALCRNMRELGIVPVH
                     IVWLCKGFEADTQCLPNEVVAAELPQHASNGTLSGPSFAREVAQGLPVALTIASASVT
                     LGERTVAAFHHGAMRIYTGDDVIGVEVGGAVKNVLAIATGIADGLGLGLNARAALITR
                     GLAEMSRLGVALGGRAETFTGLTGLGDLILTATGDLSRNRTVGMQLATGRSLTDILAA
                     LGHVAEGV"
BASE COUNT          309 a          492 c          510 g          313 t
ORIGIN      
        1 gcgtgaagaa atgatgacac gtaccgggcg ccgtacggtg ccgcaagtgt ttatcggcga
       61 aacgcatgtt ggcggttatg acgatctgtc cgcgctggat cgcaaaggtg gcctggtgcc
      121 actgctcgca accgtctgaa tatatgttgt ggaccgtcgg gccgggcgcg ttggtctgaa
      181 tatgttcgct gcgcaattaa gcagcccgct gttttcagcc ggaaaaaacc ggaaaaaccg
      241 cgggcagcac attaaataaa caagggaaac aaccatgtct gacgacaaca accagccgtt
      301 cttcaacatc cagcgcatct acttgaagga catgtcgctc gagcagccca attcgccggg
      361 catcttcctc gagcaggaaa tgccgtcggt ggaagtggaa gtggacgtga aggccgagcg
      421 cctggcggag agcgtgttcg aagtgctggt aacgggcacc gtgaccgcga aggtgaccga
      481 caaggtcgcg ttcctgatcg aagccaagca agctggtatt ttcgatatcc gcaacattcc
      541 cgccgatcaa atcgatccgc tggtcggcat tgcgtgtccg accatcctgt tcccatatct
      601 gcgctcgaac attgccgacg ccatcacccg cgccggtttc ccgccgatcc acctcgccga
      661 gatcaatttc caggcgctgt acgaacaacg tatttcacag ttgtcggcag ctcaggaagg
      721 cgtggctaac ggcgcgacgc tcaactaaat cccgcatatt ccggagccgg gcatgcaagt
      781 agccgttctc ggcgccggtg cgtggggcac cgcactggct ggccatctgg ccactcgcca
      841 ctctacggtg ctctgggcgc gcgatcgcgc gctcatcgag tccctgtccc aaacgcacaa
      901 aaacgagcat tatctgcgcg gcatcacgct gcccgcagcg cttcagtacg atcgtgatct
      961 cgcttcagcg ctggcccacg gcgcggccga agactccctc tgcgtggttg cagcaccggt
     1021 cgcgggcttg cgcgcgttat gccgcaacat gcgtgaactg ggtattgttc cggtgcatat
     1081 cgtctggttg tgtaaaggct tcgaagccga cacgcaatgc ctgccgaacg aggtggtggc
     1141 ggccgaactg ccgcagcacg cgagcaacgg cacgctttcc ggaccgagct tcgcgcgcga
     1201 agtcgcgcag ggtttgccag tggcgctgac gatcgcgagc gcgtcggtga cgcttggcga
     1261 gcggacggtc gccgcgtttc atcacggcgc catgcgcatt tataccggcg atgacgtgat
     1321 tggcgtggaa gtgggcggcg cggtgaagaa cgtgctggcc attgcaaccg gcattgccga
     1381 cggccttggc ctgggcctga acgcccgggc cgcgctgatt acccgcggac tggccgagat
     1441 gtcacgcctc ggcgtcgctt taggcggccg cgcggaaacc ttcaccggtc tgaccgggct
     1501 cggcgacctg attctgacgg cgacgggcga tttgtcgcgt aatcgcacgg tcggcatgca
     1561 gttggcgaca ggccgttcgc tcaccgacat tctcgcggct ctaggtcatg tggccgaggg
     1621 cgtg
//
LOCUS       DATGBK010001356         3391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_271106, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001356 DATGBK010000000
VERSION     DATGBK010001356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271106"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1101)
                     /locus_tag="VKJ77_18950"
     CDS             complement(<1..1101)
                     /locus_tag="VKJ77_18950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017233208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HMC47403.1"
                     /translation="MNLNAPIIEAQDLTKHFGGTRNLFTRTPTVYAVNGVSFSVQKGE
                     TFAIVGESGCGKSTLGRLLLRLIDSTEGRVIYDGKDITHLGTEPMRRLRREMQIIFQD
                     PFASLNPGMTVGQIIGEPIALHGLAKGSALNERVADLLRTVGLQPGYAERYLHEFSGG
                     QRQRIGIARALAGEPKLIVGDEPVSALDVSVQAQVINLLESLKQELGLTLIMIAHDLA
                     VIRHMSDRVAVMYLGEIVEMADVNVLFDQPLHPYTQALLQAIPASSPRQRRSKPSLTG
                     DLPSPTAPPSGCRFHPRCPHAKARCADEQPVSETLEGGHRVACHFWREIQNAGGGAPL
                     VSIVSPKLTERLAVYRQRQALVDGAIKEQSNKQ"
     gene            complement(1098..2060)
                     /locus_tag="VKJ77_18955"
     CDS             complement(1098..2060)
                     /locus_tag="VKJ77_18955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47404.1"
                     /translation="MKFSRAAHVPNLVEDVSFSVNAGETLCIVGESGCGKSVTSLALM
                     GLLPSPPANIVAGKAIFDGRDLFTLSERELADIRGNRMSMIFQEPMTSLNPAFTVGHQ
                     IAECVQRHRGLSGAAARKEALDMLRLVRIPAPESRLDAYPHELSGGMRQRVMIAMALA
                     NRPQLVIADEPTTALDVTIQAQVLLLVRSLQAETGTAMVLITHDLGVVAEVADYVAVM
                     YAGRIVEYGSVNEIFDDPQHPYTIGLMGAIPSVGKREGALATIRGSVPSPEQMPRGCR
                     FAPRCPFVEQRCIDAVPGDKRLDGTHRVACWVAPVDLALGGAAA"
     gene            2334..3197
                     /locus_tag="VKJ77_18960"
     CDS             2334..3197
                     /locus_tag="VKJ77_18960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017233206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47405.1"
                     /translation="MPTIRMLKTFRAVARTGSFAAAADRVALTQAAVSLQMRGLEQAL
                     GRQLFDRSARQITLSRQGHEIRPKVEQILDLLDELEATPAGSMQGPVAIGAVVSVIQA
                     LSLGVARLKTAHPGLDVRLLSARSDELTVMVEQGEVDIAAVVARPDQTLPETLKWTPL
                     YTEPLMLIVSREITDTDPRRILASHGFLRFDRRVRTGVVVDQALTTLGLEVTEYLELN
                     SIETIVALVRKNVGVTVLPQLHRAGWQTDPSLRLISIAQPAIMRTVGMVERASYGRTG
                     ITAAIIETLHD"
BASE COUNT          681 a         1028 c         1025 g          657 t
ORIGIN      
        1 ctgtttgttc gattgttctt tgatagcgcc gtcgaccagt gcctgacgtt gccgatacac
       61 cgccagccgc tcggtaagct tcgggctgac gatggaaacg agcggcgcac cgccgcccgc
      121 gttctgtatc tcgcgccaga aatgacacgc gacccggtga ccgccctcaa gcgtttcgct
      181 gaccggttgt tcgtcggcgc agcgcgcttt tgcatgcggg catcgcggat gaaaacggca
      241 tcccgaaggc ggtgcggtcg ggctcggcag atcgcctgtc aacgaaggct tgctacgacg
      301 ctgacgcgga ctgcttgccg gaatcgcttg cagcaacgct tgcgtatagg gatgaagcgg
      361 ctggtcgaac aacacgttca catccgccat ttccacgatc tcaccgaggt acatcaccgc
      421 tacgcgatcg ctcatatggc ggatcaccgc gaggtcatgc gcgatcatga tcagcgtcag
      481 gccaagctcc tgcttcagcg actcgagcag gttgatgact tgggcctgca cggagacatc
      541 gagcgcagag acgggttcat cgccgactat cagtttgggc tcacccgcca acgcccgtgc
      601 gattccaata cgctggcgtt ggccgcctga aaactcatgc aggtaacgtt cggcataacc
      661 gggttgtagt ccgaccgtgc gcagcaagtc ggccacgcgc tcgttgagcg cagagccctt
      721 cgctagtcca tgcagcgcga tcggctcgcc aatgatctga cctaccgtca tgcccggatt
      781 cagcgacgca aacggatcct gaaagatgat ctgcatctcg cggcgcaggc ggcgcatggg
      841 ctcggtgcca agatgcgtga tgtccttgcc gtcatagatc acgcggcctt cggtgctatc
      901 gataagacgc agcaacaggc ggccgagcgt cgacttgccg caacccgatt ccccgacgat
      961 ggcaaacgtc tcgcccttct gcacggagaa cgaaacaccg ttcaccgcgt agaccgtcgg
     1021 cgtccgcgtg aacaggttgc gcgtcccgcc aaagtgcttg gtcaggtcct gcgcttcaat
     1081 gatgggagcg ttcaggttca tgccgccgcc ccgccaagag caagatcaac cggcgcgacc
     1141 cagcacgcca cccgatgcgt tccatccagc cgtttatctc ccggtaccgc gtcgatgcac
     1201 cgctgctcca cgaacggaca gcgcggcgca aacctgcaac ctctaggcat ctgctccggc
     1261 gacggcacgg aaccacgaat ggtggcaagc gcgccctcgc gttttcccac cgatggaatc
     1321 gcgcccatca aaccgatggt gtacggatgc tgcggatcat cgaagatttc attcaccgag
     1381 ccatattcca cgatccgtcc cgcgtacatc accgcgacgt aatcggccac ttcggctacg
     1441 acgcccaggt cgtgcgtgat caataccatc gccgtaccgg tttcggcctg caggctgcgc
     1501 acgagcaaca agacctgtgc ctggatggtg acatcgagtg cggtcgtggg ttcgtcggca
     1561 atcaccaact gcggacgatt ggccagcgcc atcgcgatca tcacgcgctg gcgcatgccg
     1621 ccggacagct cgtgcggata cgcgtctagc cggctttccg gcgcgggaat gcgcacgagg
     1681 cgcagcatat ccagcgcctc cttgcgcgcc gccgcgccgc tcaacccacg atgccgctgc
     1741 acgcattccg cgatctgatg cccgacggtg aacgcgggat tgagcgaggt catcggctcc
     1801 tggaagatca tcgacatccg gttgccgcgg atatccgcga gttcgcgttc gctcagcgtg
     1861 aagagatcgc ggccgtcgaa gattgccttc cccgcgacaa tattggccgg cggactgggc
     1921 agcaaaccca tcaacgcgag cgacgtcacg cttttgccac agcccgattc cccgacgatg
     1981 cacagcgttt cgcccgcatt cacggagaac gagacgtcct cgaccagatt cggaacatgc
     2041 gcggcgcgcg agaatttcag cgagaaaccg ctgacttcga ggacgggatg cctggcaggc
     2101 ggattgacct gatcgtggcg atcaggttga ttcacgggca gcttgcttaa cgtcgacaaa
     2161 ttcaatactc cgctgcgggg tactacaggc ggcgagccgg gaatcactgt tctctctcgg
     2221 cgataaagcg accacccgtc gccaaaactt tcaatgaagt aattatgtcg gcctagatgc
     2281 atcaggaaat attaaacttt ctttttgacg cttaactttt ccttgaatta gccatgccga
     2341 ctattcgaat gctgaagacg ttccgggcgg ttgcgcggac gggctcgttc gccgccgcag
     2401 cagatagggt cgcgctcacc caggctgcgg tcagcttgca gatgcgtggc ctggagcagg
     2461 cgctggggcg gcagcttttt gaccgcagtg caaggcagat cacgctgagc cgtcaggggc
     2521 acgagattcg gccaaaggtt gagcagatcc tggatttgct cgatgaactc gaagctacgc
     2581 ccgctgggtc gatgcaaggg cccgtggcga ttggcgcggt tgtctcggtg attcaggcgc
     2641 tgtcgttggg ggttgcgcgg ctaaagactg ctcatcctgg attggatgtg aggttgttgt
     2701 cggcccgttc ggacgaactg acggtcatgg tggagcaggg agaggtcgac attgcggcgg
     2761 tcgtggcgcg ccccgaccag accctgcctg agacgctcaa atggacgccg ctatacacgg
     2821 agccgctgat gctcatcgtc agccgcgaga tcaccgatac ggacccgcgc cggattctgg
     2881 cgtcacacgg attcttacgt ttcgaccggc gcgtgcgcac gggcgtggtc gtcgatcagg
     2941 cgctgacgac gctcgggctg gaggtgaccg agtatctgga gctgaactcc atcgagacga
     3001 tcgtggcgct ggtgaggaag aacgtggggg tgacggtact gccacaactg catagggccg
     3061 gatggcagac ggacccttcg ctgcggctga tttcgattgc gcagccggca atcatgcgca
     3121 cggtcgggat ggtggagagg gcttcgtacg ggcgtacggg gattacggcg gcgattatcg
     3181 agaccttgca cgactagatt ttgcgcgctc gacggccccg aacccgtatc tcattattgg
     3241 cagattccga aaagtcaatt gcatgctatc gatacaatac ttcgatagta agggtataca
     3301 ctgcatttca tcgacgcagt gagcagaaaa aaccaagccg ctgcgcccct taaaactcat
     3361 gcaaatcgga gcacatcatg aacaagaatc t
//
LOCUS       DATGBK010001357         3598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_271113, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001357 DATGBK010000000
VERSION     DATGBK010001357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271113"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /locus_tag="VKJ77_18965"
     CDS             complement(<1..316)
                     /locus_tag="VKJ77_18965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004531654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC47406.1"
                     /translation="MKLLKLAPLAVLGAFTASSYAQSSVTLYGLISGGVGFATNQGGH
                     NAYEALSGTNQNPRWGLKGREDLGGGTSAVFQLENGFNIMSGTASQNGREFGRLAYVG
                     LAD"
     gene            complement(520..1467)
                     /locus_tag="VKJ77_18970"
     CDS             complement(520..1467)
                     /locus_tag="VKJ77_18970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003812185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC47407.1"
                     /translation="MRAVLAVCAFAAYRGKMDPLAELRTLITRHARADMMVEALPGVA
                     IMASDTTTEPIHHVYEPTLAVIAQGTKRTVLNDKVFEYRAGQYLVVSVDLPITGHVVE
                     ASEREPFLAMGLVLKPPNIATLLLETAAGDRNAAEPLGLAISHASPELLDPIVRLLRL
                     LDHPEDILVLAPMIEREILWRLLAGEQGAMVRQIGLADSRLSQISHAIRWIRSRYAET
                     LATEALAGLAGMSVSSFHRHFRAVTSMSPLQYQKRIRLQEARARLLAESGDVAAVGFE
                     VGYDSPSQFSREYSRLFGAPPGRDVARLRTVPMLEQGIA"
     gene            1586..2668
                     /locus_tag="VKJ77_18975"
     CDS             1586..2668
                     /locus_tag="VKJ77_18975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC47408.1"
                     /translation="MSLDSYVTLGRSGLRVSPFCLGTMTFGEDWGWGSSPAEAETILA
                     EYLDRGGNFIDTANIYTVGHSEKIIGDFFARQKGRRDRTVIATKFFGNLHRGDPNGGG
                     AGRKAIVEQCEESLRRLQTDYIDLYWMHNWDRTAPIEETMRAMDDLVSAGKVRYLGFS
                     DAPAWKVAQAQIIAQFRGWTPLIAMQVEYSLLRRTVEGELTPMAQELGIGVMPWSPLK
                     NGWLSGKYSRENVSTVASDRGSLVGLPGEKDFLVIDALTAVAKEANATPAAVALAWVQ
                     NRPGVTSTILGARRIDQLRANLVALDLKLTDAQIATLDEVSKPVLNFPADLNRDLSPS
                     LAFAGATVDGQRTMVLPLLSENAHRY"
     gene            complement(2719..3483)
                     /locus_tag="VKJ77_18980"
     CDS             complement(2719..3483)
                     /locus_tag="VKJ77_18980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC47409.1"
                     /translation="MQNDYLQNSQIAQISQIAATLPKVERQRLHDTVVEHLRNFIVEG
                     LLAPGVKLNERTLCETLGISRTPLREALKVLASEGLIDILPNRGASVSQMSEAEIRET
                     FELMSGLEAFSGELACERITPAELSEIKALHYAMLACREQNDLSGYYSRNQAIHDKIN
                     DAARNSALRQTYISVNRRLQALRFRSNFQTVKWDSAIRDHEAMIEALEARDGKRMASI
                     LRGHLLSKRDAVLAERTMTTLRTRSEGGTLPDAPPG"
BASE COUNT          685 a         1092 c         1094 g          727 t
ORIGIN      
        1 tatcggcgag accgacatac gccagccggc cgaattcgcg gccgttttgc gacgccgtgc
       61 cactcatgat gttgaaaccg ttctcaagct ggaacaccgc gctcgtgccg ccgcccaggt
      121 cttcgcgtcc tttcaggccc caacgcggat tctggttcgt gccgctgagc gcctcataag
      181 cgttgtggcc gccctggttg gtagcgaagc cgacaccgcc cgaaatcagg ccgtagaggg
      241 tgacactgct ctgtgcatac gacgacgccg tgaaggcgcc cagcaccgcg agaggggcaa
      301 gcttgagtag tttcatgatg gtccggtggc gagtggatgt tcttgtcgcg ctcgattttt
      361 gttgcatggc gcgttgtgac tgcaccggac tgtacaaagc cgaaaaccat aaaaataatt
      421 gtgttttctt ataaacccat caattgggtt tatacaaggg gcatcagatg tggggaatgt
      481 gtgcgggttg aggacgtgct gatgggagcg tgcaaaggtt caggcgatgc cttgctccag
      541 catcggcacg gtgcgtaagc gtgccacgtc ccggcccggc ggcgcgccga acaggcggct
      601 gtattcgcgg ctgaactgcg acgggctgtc gtagcccacc tcgaatccca ccgcagcgac
      661 atctcccgat tccgccaaaa gccgcgcacg cgcctcctgc agacgtatgc gcttctgata
      721 ttgaagcggg ctcatcgaag taactgcgcg gaagtgccga tgaaatgacg aaacgctcat
      781 gccagccagc ccggcgagcg cttcggtcgc gagcgtctcg gcgtagcggc tgcggatcca
      841 gcggatcgca tggctgattt gcgataagcg actgtcggcg agaccaatct gccgcaccat
      901 cgcaccctgt tcgcccgcga gcaagcgcca gagaatctcg cgctcgatca tgggcgcgag
      961 caccaggata tcctcagggt gatccagcag gcgaagcaag cgcacgatcg gatcgagcaa
     1021 ctccggcgat gcatggctga tggccaggcc caagggctcg gcggcattcc tgtcgccggc
     1081 cgcagtctcc agcagcaggg tggcaatgtt cggcggcttt agcaccagtc ccatcgcgag
     1141 aaagggttcg cgctcgcttg cctcgactac gtgcccggtg atcggcaaat cgacggacac
     1201 aaccaggtac tgccccgcgc gatattcgaa caccttgtcg ttcagcaccg tgcgtttggt
     1261 gccttgggcg attacggcaa gcgtgggttc gtacacatgg tggatcggct cggtggttgt
     1321 gtcggacgcc atgatcgcga cgcccggcag cgcttcgacc atcatgtcgg cgcgggcatg
     1381 gcgggtgatc agtgtgcgaa gttcggcgag agggtccatc tttccacggt aagcggcgaa
     1441 cgcacaaacc gcaagcactg cacgcatgat tcgctcaatg ttggcaggat tgtgcaagag
     1501 cttgcgagca ttggtctatc gccgggaagg cgcgcggtgg ttttattgac gtcaggccaa
     1561 cccgtcaatt ttcaggagaa acatcatgtc gctggattcc tacgtcacgc tcggccgctc
     1621 cggccttcgc gtcagcccgt tctgtctcgg caccatgacc ttcggcgaag actggggctg
     1681 gggctcgagc cccgctgagg cagaaaccat ccttgcggag tatctcgacc ggggcggcaa
     1741 tttcatcgat accgccaaca tctacaccgt cggccattcc gaaaagatca tcggcgactt
     1801 ctttgcgcgg caaaaaggcc gccgggatcg cactgtcatt gccacgaagt tctttggcaa
     1861 cctgcatcgc ggagatccga acggcggcgg ggccgggcgc aaggcgatcg tcgaacaatg
     1921 cgaggaatcg ctgcgccggt tgcagacgga ctacattgac ctgtactgga tgcacaactg
     1981 ggaccgcacc gcgcccattg aggagacgat gcgcgcgatg gacgatctcg tgagcgccgg
     2041 caaggtgcgt tatctggggt tctccgacgc gcccgcctgg aaggtcgcgc aggcgcagat
     2101 cattgcgcag ttccgcggct ggacgccgtt gatcgcgatg caggtcgaat actcccttct
     2161 gcggcggact gtggaaggcg aactgacacc gatggcgcag gagcttggca tcggcgtaat
     2221 gccgtggagt cctctcaaga acggctggct gtcggggaaa tacagccgtg agaatgtgag
     2281 taccgttgcg tcggatcgcg ggtctctggt tggcttgccg ggcgagaagg attttctggt
     2341 tatcgatgcg ctgacggccg ttgccaagga ggcgaacgcc actccggcag cggttgcgct
     2401 tgcatgggta caaaaccgtc cgggcgtgac gtcgacgatc cttggtgcac gccggattga
     2461 ccagcttcgg gcgaatcttg tcgcgctcga cctcaagctg actgacgcgc agatcgcgac
     2521 cctcgacgag gtatcgaagc ccgttctcaa cttccccgcc gatctcaacc gcgacctttc
     2581 gccgagcttg gcttttgcag gcgcaactgt cgacggtcag cggacgatgg tcttgccctt
     2641 gctgtccgaa aacgcacatc gatattgacc gcgtgtgagt aacggcgccg ggaatttgtg
     2701 gtttcgaacc ccggcgtttc aacccggcgg cgcgtccggc agcgtgccgc cctccgagcg
     2761 cgtgcgcaac gtcgtcatgg tcctttcggc aagaaccgcg tcgcgcttgg acagcaagtg
     2821 gccacgcagg atcgacgcca tgcgcttgcc gtcgcgtgct tccagcgcct cgatcattgc
     2881 ttcgtgatcg cggatcgcgc tgtcccactt caccgtctgg aagttggacc ggaaccgtaa
     2941 tgcctgcagc cgccggttca ccgatatata ggtctgccgc aacgccgaat tacgcgcggc
     3001 gtcgttgatc ttgtcgtgaa tagcttgatt gcggctgtaa taccccgaca ggtcgttctg
     3061 ctcccggcac gccagcatgg cgtaatgcag cgccttgatt tcactcagct cggcaggcgt
     3121 tatccgctcg cacgcgagtt cgcccgagaa cgcttccagc ccgctcatca gttcgaacgt
     3181 ctcgcgaatc tccgcctcgc tcatctgcga caccgacgcg ccccggttcg gcaggatgtc
     3241 gatcaagccc tccgacgcca gcaccttcag cgcctcacgc aacggcgtgc gcgaaatgcc
     3301 caacgtctcg cacaacgtgc gttcgttgag cttcacgccc ggcgcgagca agccctcgac
     3361 gatgaaattg cgcaggtgct caaccaccgt gtcatgcaac cgctgccgct caacttttgg
     3421 aagcgtggcc gcgatttgcg aaatctgcgc gatctgtgaa ttctgcagat aatcattttg
     3481 cattcaatac ctctacccat tctgttgaca cgattttacc gtacgacgcc ggtaaatttg
     3541 tagggacggg tttctaccta acaaaaacaa gcatttatcg cttccggtca ccgcgatg
//
LOCUS       DATGBK010001358         1812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108621, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001358 DATGBK010000000
VERSION     DATGBK010001358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108621"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VKJ77_18985"
     CDS             <1..198
                     /locus_tag="VKJ77_18985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HMC47410.1"
                     /translation="FGELGMSEVATMLGESGRTYPAFSPALALDKMFVRGMKPVEWIT
                     PTQDTAWLSDHLPYMAKLRVE"
     gene            complement(220..633)
                     /locus_tag="VKJ77_18990"
     CDS             complement(220..633)
                     /locus_tag="VKJ77_18990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC47411.1"
                     /translation="MTTIDSAPGESTQPRRVLLVDDSVDAAEAMSMLLETLGHEVRVM
                     HDGPSALAMVDDFAPDVVILDIGLPGMDGFEVARELRIRAVTKTALLIALTGYGAESD
                     KKAARDAGFDHHLVKPVSFTAIETVIAASFASSSK"
     gene            complement(749..1507)
                     /locus_tag="VKJ77_18995"
                     /pseudo
     CDS             complement(749..1507)
                     /locus_tag="VKJ77_18995"
                     /inference="COORDINATES: protein motif:HMM:NF013431.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
BASE COUNT          362 a          545 c          558 g          347 t
ORIGIN      
        1 ttcggcgaac ttgggatgag cgaagtggcg accatgctcg gtgaatccgg gcggacttat
       61 ccggcgtttt cacccgcgct cgcgctcgac aagatgtttg tgcgcggaat gaaaccggtt
      121 gagtggatta caccgacgca ggacaccgca tggttgtccg atcatctgcc gtatatggcg
      181 aagctgcggg tggagtaagc gggcttttta cttcgcgttc tacttcgagc tgctggcgaa
      241 tgaagcggcg atcacggttt ctatcgcggt gaaagacacg ggtttgacca gatgatggtc
      301 gaagccggcg tcccgcgctg ctttcttgtc actctccgcg ccataacccg tcaacgcgat
      361 cagcaaggcg gttttagtca ccgcgcgtat gcgcaactcc cgcgcgacct caaagccatc
      421 catacccggc aagccgatat ccaggatcac gacatcgggc gcgaagtcat cgaccatggc
      481 aagcgcgctc gggccgtcat gcatcacacg cacttcgtgg ccgagcgttt cgagcagcat
      541 cgacatggct tcggctgcat cgacgctgtc atcgacgagc aagacgcggc gcggttgggt
      601 ggattcgccg ggcgcgctgt ctatcgtcgt catggtgctt tcctggattt ttgagaattc
      661 tgaaggtgct cacgcgctca gcgaatcagg cgcgcggata atttcaggat gataccggga
      721 aagtggattt gctcccttta gcgtcggatt aagcggactc gcgcggcatc cagccgaatc
      781 gcgcttgctt cagttcgccc ggcatcaaca ccccaccgcc gatgtcctct cgcggcgcat
      841 cgagattcaa gaaatccacg gtgttcgtta caggctccac gcacagcagg tccggatgtg
      901 ccgagggcgc gaacaggacc atgtgatcga acggcgcatc ggcagaaagc gtcacgctgc
      961 gatgttcatc cggccagtcg atggtcgccg acctcgacca gccggcgaaa ttgttgtcca
     1021 gatcgaaggc attggcggac aggccttccg gcgaggccaa cgcatccacg cacggatgcg
     1081 cgccgagaaa cgtcggcagg agatcctgtg tggcgtgcca cattgcgcgc acgttcgtgt
     1141 ggatacgcgt cgccggcgtg cgagggtaat aagggtgatg acccatgccg aacggcatag
     1201 gctgatcggc gagattgcgt atcgacatcg tgacgaacag gccggaatca tcgagttcga
     1261 aacgctgcgt cgcttcatat cgatacggcc agtgatgcgc cggttcgctg ccgggctcgt
     1321 ggttcaaatg caattacacc acgttcgacg acaccagacc tacgcgccat ggccgccgcc
     1381 acgcgtgccc atgcagcgca tgatcgaacg cgttgccatc ggcggataga tcgacctcgc
     1441 ggccgtcgaa agcaaaccgc gcgtcacgca gccggttgca gtacggcagc agcggaaagc
     1501 tcgccatgcc gagcgggttg cccgcggcga gctcgtcggc cgtagcggga cgcagccaat
     1561 gcaatgcgcc gcgaccgcta ttgccattgc caacgccttt gccaacatcc ggcagatcgt
     1621 agaacgccgc gatcgcgccg ccgacgtgcg gcgccagcaa cactcgccgg tcctcgaagc
     1681 acagttcgat cagcgcagca tcattcaacg cgatgcgaaa cgcatcgtca gcggccggcg
     1741 taagctgagt ggattgagtg gattgagcag cggcgctttc acccgcgctt gtccgttgat
     1801 tggtgttcaa ta
//
LOCUS       DATGBK010001359         2620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_316754, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001359 DATGBK010000000
VERSION     DATGBK010001359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316754"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..464
                     /locus_tag="VKJ77_19000"
     CDS             <1..464
                     /locus_tag="VKJ77_19000"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HMC47412.1"
                     /translation="GMVAAVRHLSGTQPHAYNPDHSNPAAPRIRTLQEEISRVIRSRV
                     VNPKWIDGVKRHGYKGASELAATVDYLFGYDATARVVSDHQYALVADAYVNDADTREF
                     MQQHNPHALHSICERLTEAIQRGLWQSPGAYQDQIERHLLDAEQQLEGQRT"
     gene            461..1453
                     /locus_tag="VKJ77_19005"
     CDS             461..1453
                     /locus_tag="VKJ77_19005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC47413.1"
                     /translation="MNEIIFPFAALVAQEPLQQALLLAAVDPALGGVLVSGPRGTAKS
                     TTARALAELLPEGQFVTLPLGASEEQLIGSLDIEAALRDGGVRFSPGLLAKADQGVLY
                     VDEVNLLPNQLVDQLLDVAASGVNVIERDGISHRHEARFVLIGTMNPEEGELRPQLLD
                     RFGLAVELQNCFDAEKRREIVKARLAFDMDPEAFRSQFAGQQEALALRLRQARATLPT
                     FELDDAVHARVSELCIQAHVDGLRADLVMLRAARALAAFEEASAVSVEHVERVAESVL
                     LHRRKAGNASSDQGAAEPREQKKDTDEASFGYMPPEPVDITAVKNVRPLAAKKS"
     gene            1615..2127
                     /locus_tag="VKJ77_19010"
     CDS             1615..2127
                     /locus_tag="VKJ77_19010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HMC47414.1"
                     /translation="MKFHREQGDSSALHCFVLDCSGSMLSGKRLALAKGLVVALFDRA
                     YRERAEVALVCFGGTTAQVRREPGAAHWWNDRWLAPIGGGGGTPLALGVRTGANVLLR
                     AARHRPSQRRFLWLLTDGRSPETPLRPDAADQIVIVDFESEAVRLGRCVTLAESWQAD
                     YRTAASMTSA"
     gene            complement(2129..>2620)
                     /locus_tag="VKJ77_19015"
     CDS             complement(2129..>2620)
                     /locus_tag="VKJ77_19015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HMC47415.1"
                     /translation="AVLEALDQARDNEQWNAVELSVIPGVSAALATAARAGAPLGHDF
                     CMLSLSDNLKPWTVIETRLRHAAQADLVMAFYNPVSRARPWQLDRALDIVRERRSGAT
                     LIVLGRNIGRPGETLTTTTLDKLHSSQVDMRTMVIVGSSTTRSFPRTNGDGDWVYTPR
                     WYE"
BASE COUNT          532 a          756 c          820 g          512 t
ORIGIN      
        1 gcggcatggt ggcggccgtg cgacatcttt ccggcaccca gccgcatgcg tacaaccctg
       61 accacagtaa tcccgccgcg ccacgcatcc gcacgctgca ggaagaaatc tcacgcgtga
      121 tccgctcacg ggtagtcaat ccgaaatgga tcgacggtgt gaaacgacat ggttacaagg
      181 gtgcgtcgga actcgcggca acagtagatt atctgttcgg ttacgacgcc accgcgcggg
      241 tcgtatcgga tcatcagtac gcgctggttg ccgatgccta cgtgaacgac gcagacacgc
      301 gcgagttcat gcaacagcat aatccgcacg cactgcattc gatctgcgag cgtttgaccg
      361 aagcgataca gcgtggccta tggcagagtc caggcgcgta tcaggaccag atcgaacgcc
      421 atctgctgga cgccgaacag caactcgaag ggcaacgaac gtgaacgaaa tcatcttccc
      481 gtttgccgca ttggtcgcac aagaaccctt gcagcaagca cttttactcg ccgcggtcga
      541 tccggcactc ggcggcgtgc tggtcagcgg tccacgtggc accgcgaaat cgacaaccgc
      601 gcgtgcgctc gccgaactgc tgcccgaagg ccagttcgtg accttgcctt tgggggcaag
      661 cgaagaacag ttgatcggct cgctggatat cgaagctgcg ttgcgcgatg gcggcgtgcg
      721 tttttcgccg ggtttgctcg cgaaggcgga ccaaggcgtg ttgtacgtcg atgaagtcaa
      781 tctgctgccc aatcaactcg ttgatcagtt actcgatgta gccgcgagcg gtgtgaacgt
      841 gattgaacgc gacgggattt cgcatcgaca tgaagcgcgc tttgtgttga tcggaaccat
      901 gaatccggag gagggcgaac tcaggccgca actgctggat cgcttcgggc tggcagttga
      961 attgcagaat tgcttcgatg ccgaaaaacg ccgtgagatc gtcaaggcgc gtctcgcatt
     1021 cgatatggat ccagaagctt ttcgctcgca atttgcggga caacaagaag ccttggcctt
     1081 gaggcttcgc caagccagag cgacgcttcc gactttcgaa ctcgatgacg cggttcacgc
     1141 acgcgtcagt gagctatgta ttcaagcgca cgtggacggc ttgcgcgctg atctcgtcat
     1201 gctgcgcgca gcgcgagcgc tggcggcttt tgaagaagcc tcagcggtga gcgtggaaca
     1261 cgttgagcgc gtggcggaat cggtgttgtt gcatcggcgc aaagcgggca atgcgtctag
     1321 cgatcagggc gcggctgagc cccgtgagca aaagaaagac actgacgaag caagcttcgg
     1381 ttacatgccg cctgagcccg tcgacatcac agcagtcaag aacgtcaggc cgcttgccgc
     1441 aaaaaaatcc tgagccatcg aaggccggat ccacaggccg aacccggccg ccttcgatgg
     1501 cttgatgctt cagcaccggg tcgaacacga tcacgcgcgg gcgaagcgag cacgcgcatc
     1561 gactggttgc aaacgctgct ggcgaagcgc aatcagccgt tagacaaatc gcacgtgaag
     1621 ttccatcgcg agcaaggcga cagcagcgcg ttgcattgct tcgtgcttga ttgctccgga
     1681 tcgatgctaa gcggcaagcg gcttgcgctg gcgaaagggc tcgtcgtggc gttgttcgac
     1741 cgggcgtacc gcgagcgtgc cgaggttgcg ttggtctgct ttggtggtac gacggcgcaa
     1801 gtgcgacgcg aacccggggc tgcgcattgg tggaacgatc gctggcttgc acccataggt
     1861 gggggcggag gaacgccgct cgcgctgggc gtacgcacag gtgccaatgt gcttctaagg
     1921 gctgcgcgtc atcgcccttc acagcggcgt ttcctgtggt tgctgactga cggccgcagt
     1981 ccggaaacac cattgcgccc ggatgcagcc gatcagattg tcatcgtcga tttcgagagt
     2041 gaggcggtgc gtttagggcg ttgcgtgacg ctcgccgagt cctggcaggc ggactatcgt
     2101 acggccgctt ccatgactag cgcttagttc attcgtacca gcgtggggtg tatacccaat
     2161 ctccgtcgcc gttggtccgg ggaaaactac gcgtggtgga tgaacctacg atcaccatcg
     2221 tgcgcatatc gacctgactg gaatgcagtt tgtccagcgt cgtagtggtc agtgtttcac
     2281 ccggcctgcc gatgtttcga cccagcacaa tcagggtcgc gccactccga cgctcacgca
     2341 cgatatccag tgcacgatcg agttgccacg gccgcgcgcg agagacgggg ttataaaacg
     2401 ccatcacaag atcggcttga gccgcgtgcc gcaagcgcgt ttctatcacg gtccacggct
     2461 tgaggttgtc cgaaagcgac aacatgcaga agtcgtgacc aagcggcgcg ccagcgcgag
     2521 cggctgtggc cagcgctgcg gatacgcccg gtattacgct gagttccacg gcgttccact
     2581 gctcgttatc gcgtgcttga tcgagcgctt cgagcacagc
//
LOCUS       DATGBK010001360         3529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_316757, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001360 DATGBK010000000
VERSION     DATGBK010001360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3529
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316757"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            400..828
                     /locus_tag="VKJ77_19020"
     CDS             400..828
                     /locus_tag="VKJ77_19020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47416.1"
                     /translation="MFVAASAGLAWACLITPGFALADDTPNPCDALKRIVAAAPDGFT
                     SLRPDDGKAVAQPYGSDAQCAAKAGTYSCTWTKGANAGSAADALQGVAADIAACLPDA
                     THDQNSPGRQHFYIGARGQRTQITATTAGAGKLTLAVSGK"
     gene            839..1204
                     /locus_tag="VKJ77_19025"
     CDS             839..1204
                     /locus_tag="VKJ77_19025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC47417.1"
                     /translation="MTKRVLIADDDDDALSCLANLLTGLGHQVAQASCGVQALDVARQ
                     FAPEVVILDLGMSPMDGLSAARALRALPDGPAMLLVALTGWGQPQHHAMTQEAGFDIH
                     LVKPVSIDQLGFILSMTQP"
     gene            complement(1360..2196)
                     /locus_tag="VKJ77_19030"
     CDS             complement(1360..2196)
                     /locus_tag="VKJ77_19030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007730801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpW family outer membrane protein"
                     /protein_id="HMC47418.1"
                     /translation="MKKLLAAGKPLAVAVATCASLSAHAQSAGDNVVGLGWFHVMPQD
                     SSDALTTHVAPTPINTPLRLPSQFTSAGTSLSTKSADTFGLVFTHFFTDHIATTFVGG
                     VPPEFELDGHGTIQPPGPAGALGNQNLDQTNPIVKSVRQWSPALIFQYYFNAPTAAFR
                     PFAGLGVSYNFFTNIKLTNGFETSTQNNLGAVLAAGAGKPGPTSVEAKASSSWQPVFN
                     LGATYNFDKHWGLIASLTYIPLKTTSSLIIKAADGTELATTKTRLKADPLITFLAVSY
                     RF"
     gene            complement(2301..3518)
                     /locus_tag="VKJ77_19035"
     CDS             complement(2301..3518)
                     /locus_tag="VKJ77_19035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013696331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2957 domain-containing protein"
                     /protein_id="HMC47419.1"
                     /translation="MGAAVASVTPFLGGCGGGSDAPQAPVVRLCPASLDYTTTFTGGG
                     GSGELVQLQLDTTKLTWQVTYVESPIPVVTGTVSPTRAGTSQNGTLTMETGLPTQKLN
                     QCAYQLNGATLDPTRPARIFVGEGVAGGTIPGKELQFGGILGQGVVPDRTFPYYPFIG
                     FSTLETNLANVAGTYNQLGYHEIPSQNYARLSVDSKITINADGTWQECDNTGVNAGKC
                     QQAGSNFAQSPDGSGAFVTNNFLGQGNPTLAAGPLGKGYMIVGKLRGQNVPILVRTGT
                     ANATITTGIPPFADDESGISMMSPQISVASGSVNGEYVGVDNAFDYRTTALSGAQATL
                     IDPFQPSQVALSRALNLDYTETIPGLVTSTVVGASTGATPTGKFIFSGGVFGYLDQSD
                     PTTPYFTIGSFVQ"
BASE COUNT          687 a         1020 c         1100 g          722 t
ORIGIN      
        1 gcggcgcggc gcgcggggaa gaaggtgtga tcaatacggt ttgatttttg ctcgcgcata
       61 aaagtaaagc ccagatgcgg cggcgttgta tcgacgataa atagaggcaa tggacgggaa
      121 cgttccctat acttgtcgcg ctgttcgcct caggtccggg atcgtttcaa atttgacaga
      181 ttctggacag cattcggtgg cgcacatacg gacacacgcc gccggtgcag gcttttcaaa
      241 aggtctcgtc ggcgacgaaa ccggcttgga agctggtttg gaaacgactt ggaagctggc
      301 ttaaaagctg gatttccgcg ttagcttccg ggccagctta taaaaagacg aagcggagac
      361 aggacagcgc ccactatgaa aagcactctt cggggtctca tgttcgtggc ggcatcggcg
      421 ggccttgcat gggcttgcct gattacgccg gggttcgctc tcgccgacga cacccccaat
      481 ccctgcgatg cactcaaacg cattgtggcg gccgcacctg atggcttcac ctccttgcga
      541 cccgacgatg gcaaagctgt cgcgcagcct tatggcagcg atgcgcagtg cgcggcgaaa
      601 gccggcactt atagctgtac gtggacgaag ggcgcgaatg ctggatccgc ggcagatgct
      661 ttacagggcg tggcggcgga cattgccgcg tgcttgccgg acgctacaca cgatcaaaac
      721 tcgccgggtc ggcagcattt ttatattggg gcgcgggggc agcgcacgca gatcaccgcc
      781 acgaccgctg gtgcaggaaa gttgacgctc gcggtgtcgg gcaaatgagg gggcagttgt
      841 gaccaagcgt gttctcatag ccgatgatga cgacgatgcc ctgagttgcc tggcaaactt
      901 gttgacgggg ttagggcatc aagtggcgca ggcatcgtgc ggcgttcagg cgctcgatgt
      961 cgcgcggcaa ttcgcaccgg aagtggtgat tctggatctg ggcatgtcgc cgatggacgg
     1021 tctttccgct gcacgtgctt tgcgagcgtt gcccgacggc ccggcgatgc tgttggttgc
     1081 gctaactggc tggggacagc cgcagcatca cgcgatgacg caggaagcgg gtttcgatat
     1141 ccatctggtg aaaccggttt ctatcgatca gttgggcttt attctgtcga tgactcagcc
     1201 ttgatgttgt acgttcgcaa caaattgacg tggatcggca gagggatgtt gcgctgcacc
     1261 aatggttttg gtacagtggg gttgtctcct ccatgtctcc actgatatgg attcagcccg
     1321 cccatcttag gcgggctttt ttttgcccga aaaagcccct cagaacctgt acgaaaccgc
     1381 caagaacgta atcagcggat cggctttcag ccgtgtcttc gtcgtagcaa gttcggtccc
     1441 atccgctgcc ttgataatca acgacgatgt cgtcttcaac ggaatgtagg ttagcgaagc
     1501 aatcaaaccc cagtgcttgt cgaagttata agtcgcgcca agattgaaca ccggctgcca
     1561 cgacgatgaa gccttcgcct ccaccgacgt cggtcccggc ttgcccgcgc ccgcagccag
     1621 cactgcgcca agattattct gcgtcgatgt ctcgaaaccg ttggtgagct tgatgttcgt
     1681 gaagaagtta tacgacacgc caaggcccgc aaacggcctg aacgcagcag tcggcgcatt
     1741 gaagtaatac tggaaaatca gcgccgggct ccattgccgc acgcttttca cgatcggatt
     1801 ggtctgatcg agattctggt tgcccagcgc gcccgccggc cccggtggct ggatcgtgcc
     1861 gtgaccatcg agttcgaact cgggcggcac accgccgaca aacgtggtcg caatgtgatc
     1921 ggtgaaaaag tgcgtgaaga cgaggccgaa cgtatcggca ctcttcgtcg acaaactcgt
     1981 ccccgccgat gtgaattgcg atggcagccg cagcggcgta ttgatgggcg tcggtgctac
     2041 atgtgtggtc aacgcatcgc tcgaatcctg cggcatgacg tggaaccagc caagtcccac
     2101 gacgttatcg ccggcactct gtgcatgggc cgacagcgac gcacatgtag ctaccgctac
     2161 cgccaacggt tttcccgcag ccaaaagctt tttcatttcg tctctcttcg gttacaggcc
     2221 gtcatgcgaa cgccgcgcga gaaaacccgg gcgttgttcg catgcagccg ttcttgatgg
     2281 gctgccagac ggtcactggg tcactgcaca aatgagccga tggtgaagta cggtgtcgtt
     2341 gggtcgctct ggtcgagata gccgaacacg ccgccggaga agatgaactt gccggtcgga
     2401 gtagcaccgg tcgacgcacc gaccaccgtc gatgtcacca gacccggaat cgtctcggtg
     2461 tagtcgagat tcagcgcgcg ggacaacgca acctgcgacg gctggaacgg atcgatcaag
     2521 gtggcctgcg cgccgctgag cgcggtcgtg cggtaatcga aggcgttatc cacgccgacg
     2581 tattccccgt tcaccgaccc cgacgccacg ctgatttgcg gcgacatcat cgaaatgccg
     2641 gattcgtcgt cggcgaaggg cggaatgccc gtggtgatcg tggcgttcgc cgtgccggta
     2701 cgcacgagga tcggcacgtt ctggccacgc agcttgccca cgatcatgta gcccttgccc
     2761 agcggaccgg cggcgagtgt cgggttacct tgcccgagga agttgttcgt gacgaacgcg
     2821 ccgctgccat ccggcgattg cgcgaagttc gatccagctt gctggcactt gccggcgttc
     2881 acgccagtgt tgtcgcactc ttgccaggtg ccatcggcgt tgatcgtgat cttcgagtcg
     2941 acagagagac gcgcgtagtt ttgcgacgga atctcgtgat agcccagttg gttatacgtc
     3001 ccggctacat tggcgagatt cgtttccagc gtcgagaaac cgatgaacgg gtaatacggg
     3061 aaggtccggt caggcaccac gccctggccg agaatcccgc cgaactgcaa ctccttgccg
     3121 ggaatcgtgc cgcccgccac gccttcgccc acgaagatgc gcgcgggacg cgtcggatcg
     3181 agcgtcgcgc cgttcaactg gtacgcgcac tgattgagct tttgcgtggg caagccggtt
     3241 tccatcgtca gcgtgccgtt ctgcgacgtg ccggcgcggg tgggggagac cgtgccggtg
     3301 acgacaggga tcggagattc cacgtatgtc acttgccacg tgagtttcgt cgtgtcgagt
     3361 tgcaattgga cgagttcacc gctgccgccg ccaccggtga acgtggtcgt gtagtcaagc
     3421 gacgccgggc acagccggac gaccggcgcc tgaggcgcat cgctgccacc gccgcagccg
     3481 ccaaggaacg gcgtgacgct ggcgactgcc gcacccatcg cacccaacg
//
LOCUS       DATGBK010001361         2139 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_39878, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001361 DATGBK010000000
VERSION     DATGBK010001361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39878"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..875)
                     /locus_tag="VKJ77_19040"
     CDS             complement(<1..875)
                     /locus_tag="VKJ77_19040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009915355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1338 family protein"
                     /protein_id="HMC47420.1"
                     /translation="MNSNLAALLAIALPESDVNGLVRLMNLPSVLSNTTRGTVSRAEL
                     AQAMNMVLFAGLLERVPTGRAYTDDLQHTQTSVQFDHGALRTVRWAESGALPPGEAAF
                     TRILRPLGFVLNGTYPLDRIKMTGRSYMHADAPDEIAQYFVSELHPERFSPEFQQAVT
                     NVIGTSVDPLTPQAVASLAELERDRSLPLAAALDLLPVLVRCFERQHPVPRLTDYETL
                     RAESAEMAWIATEGNAFNHATDRVDDVFAVADAQRALGRPIKDSVEISKSGRVRQTAF
                     RADPVRRAFIGADGA"
     gene            1070..1999
                     /locus_tag="VKJ77_19045"
     CDS             1070..1999
                     /locus_tag="VKJ77_19045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004198543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47421.1"
                     /translation="MRKGIPNLVALQIFEAAARHESFTRAANELSLTQSAVCRQVAGL
                     ESRLGIALFLRVKKRIVLTTHGRDYAALVRKNLDRIERDTLELMAQRGVGRILEIAVV
                     PTLASQWLIPRLPLFRALRPDITVNLSIRTEPFLFSDSPFDAALYFGDSVWPGTQGKL
                     LFREGKVVPVCSPSLLAGSAPGASISLEQLADLPLLHLSTRPDAWRTWFRLNGLEHDV
                     RAVRGARYELFTMLTSAAQAGLGVALLPEILLADELSSGRLAVPLNKPMSGKSGYYLV
                     APDEIAHDEPFVALSDWLSSIVPQAQREAEAVA"
     gene            complement(2001..>2139)
                     /locus_tag="VKJ77_19050"
     CDS             complement(2001..>2139)
                     /locus_tag="VKJ77_19050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007747585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47422.1"
                     /translation="PILEPWWPSFSGPFLYYPGRRHLPAPLRAFVDFLKSGGASDRSG
                     L"
BASE COUNT          414 a          662 c          669 g          394 t
ORIGIN      
        1 ctcgcaccgt cggcgccgat gaacgcgcgg cgcaccgggt cagcgcgaaa cgctgtctgg
       61 cgcacccggc ccgatttaga aatttcaaca ctgtccttga tcggacggcc gagcgcgcgc
      121 tgggcatcag cgacggcgaa gacatcatcc acacggtccg tcgcgtgatt aaacgcgttg
      181 ccttcggtcg caatccacgc catttccgcc gattcggcgc gcagcgtttc atagtccgtc
      241 agacgcggca ccgggtgctg gcgctcaaaa cagcgcacga gcacgggcag caggtcgagg
      301 gcagcagcca gcggcagtga gcgatcgcgc tccagctcgg ccagcgacgc gaccgcttgc
      361 ggcgtcagcg gatcgacact cgtgccgatc acgttcgtta ccgcttgctg gaactcggga
      421 ctgaagcgct cgggatgcag ttcgctgacg aaatactgcg cgatttcatc gggggcatcg
      481 gcgtgcatgt acgagcgccc cgtcatcttg atgcgatcga gcgggtacgt accgttcagc
      541 acaaaaccca gcggcctcag aattcgcgtg aacgcggctt cgcccggcgg caaggcgccg
      601 gattcagccc agcgcacggt gcgcaacgcg ccgtggtcga actgaacgct ggtttgcgtg
      661 tgctgaaggt cgtcggtata agcgcggcct gttggcacgc gttcgagcag gccggcgaat
      721 agcaccatgt tcatcgcctg cgccagttca gcacggctga ccgtgccccg cgtggtattg
      781 gaaagcacgg atggcaagtt catcaatcgc actaacccgt ttacatcaga ttccggaagg
      841 gcaatagcaa gcagtgcggc gagattcgag ttcatttatc cagttccggc tgatccagcg
      901 tggtgcgagc ccagggcccg gttcgacgat tcactggaag gcaattctgg acggcggcaa
      961 aaagccgcgc aattgatata aactcatcac ttcattcgca aaaagaacta agtcgccaaa
     1021 gcagtcgccc aattccctcg atgcgactcg caaacggtac cggtaaaaca tgagaaaagg
     1081 tattcccaat ctggtcgcct tgcagatctt cgaggccgcc gcgcgccacg agagcttcac
     1141 ccgggccgcc aatgaactct cgctcacgca aagcgcggta tgccgccagg ttgcgggact
     1201 ggaaagccgc ctgggcatcg ctttgttcct gcgcgtcaag aagcggattg tgctgaccac
     1261 gcatggacgt gattacgcgg cgctcgtgcg caagaatctc gaccggattg agcgcgatac
     1321 gctcgaactg atggcgcagc gcggcgtggg gcggattctg gagatagcgg tcgtccctac
     1381 gctcgccagc cagtggctga tcccgcgcct gccgctattt cgcgcgctgc ggccggacat
     1441 caccgtgaat ctgtcgatac gcaccgagcc tttcctgttc agcgattcgc ccttcgacgc
     1501 cgcgctgtat ttcggcgatt cggtatggcc cggcacacaa gggaagctgc tgttccgcga
     1561 gggcaaggtc gtgccggtgt gcagcccctc gctgctcgcg gggagtgcgc ccggcgcgtc
     1621 gatttcgctt gagcagcttg ctgatttgcc gctgctgcat ttatcgacac ggcccgacgc
     1681 ctggcgcacc tggtttcgcc tgaacgggct tgagcacgat gtgcgagcgg tacgcggcgc
     1741 gcgctatgaa ttgttcacga tgctcaccag cgcggctcag gcgggcctgg gtgttgcgct
     1801 gctgccggag atcttgctcg cagacgaatt gtcgtccggc cggctggccg tgccgctgaa
     1861 taaaccgatg tccggcaagt caggttatta cctcgtcgcg cccgatgaaa ttgcccacga
     1921 cgagccgttc gtcgcgctct cggactggtt gagttcgatc gtgccgcaag cgcaacgcga
     1981 ggcggaggcg gttgcgtaaa tcaaaggcct gaacgatccg atgccccacc actcttgagg
     2041 aaatccacaa aagcgcgcaa cggcgcgggc aggtgccgac gccccggata gtaaagaaat
     2101 ggccccgaaa aggacggcca ccacggttcc aggatcggc
//
LOCUS       DATGBK010001362         2055 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_39887, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001362 DATGBK010000000
VERSION     DATGBK010001362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39887"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..673
                     /locus_tag="VKJ77_19055"
     CDS             <1..673
                     /locus_tag="VKJ77_19055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004189890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HMC47423.1"
                     /translation="APATPYGKNIAPRIAAHLDVAQISDITAVDSPDTFERPIYAGNA
                     IATVQSSDAIKVITVRTTGFDPVAAEGGNASVEKIEASADAGISKFVSRELTKLDRPE
                     LTSAKIIVSGGRGLGSGENYTKVLEPLADKLGAALGASRAAVDAGFVPNDYQVGQTGK
                     IVAPNLYVAVGISGAIQHLAGMKDSKVIVAINKDAEAPIFGVADYGLVGDLFTVVPDL
                     VKELG"
     gene            768..>2055
                     /locus_tag="VKJ77_19060"
     CDS             768..>2055
                     /locus_tag="VKJ77_19060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009904408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC47424.1"
                     /translation="MSYRAPVKDMLFVMKELADIESIAALPGFEDANLDTAQAVLEEA
                     ARFNNEVVAPLNFEGDKNPSFWKNGEVTTTPGFKEAFRQFGEGGWQGVLHPVEYEGQG
                     LPKLIATPCIEMLNAANLSFALCPLLTDGAIEALLTAGTEEQKQLFVPKLISGEWTGT
                     MNLTEPQAGSDLALVRTRAEPQDDGTFKIFGTKIFITYGEHDMAKNIVHLVLARTPNA
                     PDGVKGISLFLVPKFITDENGTLGARNDVHCVSIEHKLGIKASPTAVLQFGDHGGAIG
                     QLIGEENRGLEYMFIMMNAARFAVGMQGVGVSERAYQKAVAFAKDRVQSRPVDGSAKQ
                     PVSIIHHPDVRRMLSAMRALTEASRALAYVAAAHCDLAHHLPDETARASHQAIYEFLV
                     PIVKGWSTQLSIDVASLGVQVHGGMGFIEDTGAAQYY"
BASE COUNT          433 a          583 c          661 g          378 t
ORIGIN      
        1 ggctccggcg acaccgtacg gtaagaacat cgcaccgcgt attgcggcgc atctggacgt
       61 ggcgcagatc agcgacatca cggcagtgga ttcgcctgac acgttcgaac gccccatcta
      121 cgcaggcaac gcaatcgcta ccgttcaatc gagcgatgcg atcaaggtca tcacggttcg
      181 caccacgggt ttcgatccgg tggcggcaga aggtggcaat gcatcggtag agaaaatcga
      241 agcatcggcc gacgcgggta tctccaagtt cgtgagccgc gagttgacga agctggaccg
      301 gccggagctg acgtcggcga agatcatcgt gtcgggtgga cggggtttag gcagcggcga
      361 gaactacacg aaagtgctcg agccgctggc ggacaaactc ggtgcagcgc tgggtgcatc
      421 gcgtgcagcg gtcgatgccg ggttcgttcc gaacgactat caagtaggtc agacgggcaa
      481 gatcgtggcg cctaacttgt atgtcgccgt cggtatctcg ggcgcgatcc agcacttggc
      541 cgggatgaag gattcgaagg tcatcgtcgc gataaacaag gacgcggaag cgccgatctt
      601 cggcgtggcg gactatggcc tcgtgggtga cttgttcacg gtcgtgccgg acctcgtgaa
      661 agagttgggc tgatcgttct taaagccatc ggctagaaag aaagcaagac cgaaaaaagg
      721 ggcgacatac gtgcgcccct tttcacatct gttgggggag acaagacatg agctatagag
      781 cgcccgtcaa ggacatgctg ttcgtgatga aggaactagc cgatatagaa agcatcgcgg
      841 cgctgccggg tttcgaggac gccaatctcg ataccgcgca ggccgtactc gaagaagccg
      901 cgcgctttaa caacgaagtc gtcgcgccgt tgaacttcga gggtgacaag aacccgagct
      961 tttggaagaa cggcgaggtc acgaccacgc ccggtttcaa agaggctttc cgccagttcg
     1021 gcgaaggtgg ctggcagggc gtgctgcatc cggtcgagta cgaaggccag gggttgccca
     1081 agctgatcgc gaccccctgc attgaaatgc tgaacgctgc gaacctgtcg ttcgcgttgt
     1141 gtccgctgct caccgatggc gctatcgaag cgttgcttac cgccgggacc gaggagcaaa
     1201 agcagctctt cgtgcctaag ctgatctcgg gcgaatggac cggcacgatg aacctcaccg
     1261 agccgcaagc cggttccgat ctcgccctgg tccgcactcg cgccgagccg caggacgacg
     1321 gtacgttcaa gatcttcggc acgaagattt tcatcaccta tggcgagcac gacatggcga
     1381 agaacatcgt ccatctcgtg ctggcgcgaa cgcccaacgc gcccgatggc gtgaagggaa
     1441 tctcgctctt cctggtgccg aaattcatca ccgatgaaaa cggcacgctc ggcgctcgca
     1501 acgacgtgca ttgcgtatcg atcgaacaca agcttggaat caaggcgagt ccgaccgccg
     1561 tgctgcaatt cggcgatcac ggcggtgcca tcggccagtt gatcggcgag gaaaatcgcg
     1621 ggctggaata tatgttcatc atgatgaacg cggcgcggtt cgcggtcgga atgcagggcg
     1681 tgggcgtgtc ggagcgggcg tatcagaagg ccgttgcgtt cgcgaaggat cgcgtgcaaa
     1741 gccggccggt cgatggctcc gccaaacagc cggtgtcgat cattcatcac cccgacgtgc
     1801 gccgcatgct ctccgccatg cgtgcgctga ccgaagcatc gcgcgcgctg gcttatgtag
     1861 cggcggcgca ctgcgacctc gcacatcatc ttcctgatga gaccgcgcgc gccagccatc
     1921 aggcgatcta cgagtttctc gtaccgattg tgaagggctg gagtacgcag ctgtccatcg
     1981 atgtcgcgag cctcggtgtg caggttcacg gcggcatggg gttcatcgag gacacgggcg
     2041 cggcgcagta ttacc
//
LOCUS       DATGBK010001363         1836 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_293904, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001363 DATGBK010000000
VERSION     DATGBK010001363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293904"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..666)
                     /locus_tag="VKJ77_19065"
     CDS             complement(154..666)
                     /locus_tag="VKJ77_19065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HMC47425.1"
                     /translation="MHDDDRGIRRERRLLVLLAVISLGLVGGALYLQFVKGEDPCPLC
                     IIQRYFFVLIAVFALLGASFRGWRGIALLETLVALSALGGVVAAGRHVYVQAHPGFSC
                     GFDALQPVVDSLPPAQWLPQVFKVAGLCETPYPPIFGLSLPQWGLIAFAVIFLLVAGS
                     LRGKRKLRAG"
     gene            complement(799..>1836)
                     /locus_tag="VKJ77_19070"
     CDS             complement(799..>1836)
                     /locus_tag="VKJ77_19070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006756770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HMC47426.1"
                     /translation="ARLRRAGGVIVGRTNMSEFAFSGLGLNPHYGTPHSPYRSNVAGD
                     ERIAGGSSSGAAASVADGMAAIALGTDTGGSIRIPAALCGLTGFKPTAARVPTQGGVP
                     LSTTLDSFGPIGLSVACCSLVDRILAGRDAGVPATRPLDGVRLGVLTNYVMDGVDETV
                     ASAYAAAIGHLSAAGALVEDVRFAPLERLAEVNRFSFASIEAYAWHRPLLQAHADEYD
                     PRVRVRILKGQPASAADYIDLLQARAAMIEQARALWQRFDAIVCPTVPVVPPRVADLE
                     HDDEAFGRTNALILRNPSVFNFLDSCALSLPCHPRGEAPVGLMLAGARFGDDALLSIG
                     RAVEAVLETTR"
BASE COUNT          379 a          590 c          599 g          268 t
ORIGIN      
        1 atattggtgc gcggtggcgc tgccaaaaag ctgggctggg taacagccgt cttgggcaag
       61 gctgaggccc gccacgcgcc gtggctccgg cttttgcgga aagcgagagc agttcggcca
      121 aggtctaagg tccgaaccgc acgccatccg cattcaacca gcgcgcaact tgcgcttgcc
      181 cctcaaactg ccggcgacca acaggaagat caccgcaaac gcgataagac cccattgtgg
      241 gagcgagagt ccgaaaatgg gcggataggg cgtctcgcaa agtcccgcga ccttgaagac
      301 ctgaggcagc cactgtgcag gcggaagaga atccacgaca ggctggaggg catcgaaccc
      361 gcagctaaat cccggatggg cctgcacata aacgtgccgt ccggcggcta ccacgccccc
      421 gagagcggac agcgcaacca gcgtttcaag caacgcgatt ccgcgccatc cccggaacga
      481 agcgccgagc aaggcaaaga ctgcgatcag cacgaaaaag tagcgttgaa tgatgcaaag
      541 cgggcaagga tcttcacctt tgacgaactg aagatagagc gctccgccaa cgagcccgag
      601 agagatcacc gcgagcaaga ccagcaatcg tcgttcgcgg cgaatcccgc ggtcgtcgtc
      661 gtgcatggtg aaatgattca aggagttgtt catattttcc gaattgttcg agaaaaaaac
      721 acctgaaagg gcacatccgg cgacagaatt ctatcgcgat cgcgatcgcc aggcggtttc
      781 aggcgcggca tgggcggatc agcgcgtggt ttcgagtacg gcttccacgg cacggccgat
      841 ggagagcagc gcgtcgtcgc cgaaccgcgc cccggccagc atgaggccga cgggcgcttc
      901 gccccgcgga tggcacggca gcgacaatgc gcaactatcg aggaaattga aaacggaggg
      961 gttgcgcagg atcagcgcgt tggtccggcc aaacgcttcg tcgtcgtgtt cgaggtcggc
     1021 cacacgcggc ggcacgaccg gcacggtcgg acacacgatg gcgtcgaacc gctgccacag
     1081 cgcgcgcgcc tgctcgatca tcgcggcgcg cgcctgcaac aagtcgatgt agtcagccgc
     1141 gctggcgggc tggcctttca ggatccgcac gcgcacgcgg ggatcgtatt catcggcgtg
     1201 tgcctgcaat agcggccgat gccatgcgta agcctcgatt gaagcgaagc tgaatcgatt
     1261 gacctcagcg agtcgctcga gcggcgcgaa ccgcacgtct tccaccagcg cacccgctgc
     1321 cgacagatgc ccgattgccg cggcgtaggc actggcgacc gtttcgtcga cgccgtccat
     1381 gacgtagttc gtcagcacgc caaggcgcac gccgtccagt ggccgggttg cgggcacgcc
     1441 ggcgtcccgg ccggcaagaa tgcggtcgac aagcgagcag cacgccaccg acaacccgat
     1501 cggcccgaac gagtcgagcg tggtggacag cggcacgccg ccctgcgtag gcacgcgggc
     1561 ggcggtcggc ttgaagccgg tgagcccgca gagcgcggcc gggatgcgaa tggagccgcc
     1621 ggtgtcggtg ccgagcgcga tggccgccat gccgtcggcc accgacgccg cagcgcccga
     1681 tgacgagccc ccggcaatcc gctcatcgcc cgcaacattg cttcgatacg gcgagtgcgg
     1741 tgttccgtag tgcgggttca gcccgagccc ggagaacgcg aattcgctca tgttggttcg
     1801 cccgacaatc acgccgcccg cccgccgcag cctggc
//
LOCUS       DATGBK010001364         3085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_85273, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001364 DATGBK010000000
VERSION     DATGBK010001364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85273"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..351
                     /locus_tag="VKJ77_19075"
     CDS             <1..351
                     /locus_tag="VKJ77_19075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011353408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC47427.1"
                     /translation="LLPHTPDTEGILNRRTFARLAPGAYLVNLARGGHLVDDDLLHAM
                     QTGQIAAATLDVFHTEPLPDNHPFWRTPRVTITPHIAAETLREESTEQIANKIMALTR
                     GEPISGIVDVKRGY"
     gene            397..1320
                     /locus_tag="VKJ77_19080"
     CDS             397..1320
                     /locus_tag="VKJ77_19080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HMC47428.1"
                     /translation="MLPAKVKIVEVGPRDGLQNEKEFVATDVKIELVNRLANAGLQNV
                     ESASFVSPKWVPQMADGAAVMAGIERRAGTIYSALTPNLRGFESALEAKVDEIVIFGA
                     ASEAFSQKNINCSIAESIARFEPVAKAAKEAGLRVRGSISCALGCPYQGDVPIDAVVD
                     VVQRMKALGCDEIDIADTIGVGTAGRTREVMAAVSKVFPRERLSGHFHDTYGQAVANI
                     YASLQEGIEIFHASVAGLGGCPYAKGATGNVATEDVIFLLNGLGIDTGVDLDQLVEIG
                     DFISQAIGKPSASRVGRALLAKKRDGVAPCV"
     gene            1343..1852
                     /locus_tag="VKJ77_19085"
     CDS             1343..1852
                     /locus_tag="VKJ77_19085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HMC47429.1"
                     /translation="MNTMNETLDALPESARRVALLLQERGHTSPVVMLAETGKTSAEA
                     AAGLGCAVAQIAKSILFRRKKDDAPVLVIASGVNRVDEKKVAERVGELARADAKFVRE
                     KTGYAIGGVCPIGHATPPLTLIDEDLLALDSLWAAAGHPHAVFNLTPQELVALTGAPV
                     ADVALRETV"
     gene            1894..2451
                     /locus_tag="VKJ77_19090"
     CDS             1894..2451
                     /locus_tag="VKJ77_19090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HMC47430.1"
                     /translation="MNPSTGLCDGCFRTIDEIAGWSSFDDPQKTAVLTQVQARKKGPR
                     VVQIGERFTATLALPPDSIKSFATLVNDHNPLHHDDAYAEASRFGSLIASGTQPTAHL
                     MAMLATHFSVYAQPLGLEFGIKLVRAVKANDVLAMSWQVTVAHWKPSLNGDLVNLEGQ
                     ALNQLGEIVVKASATIVVMPKAPNT"
     gene            2448..>3085
                     /locus_tag="VKJ77_19095"
     CDS             2448..>3085
                     /locus_tag="VKJ77_19095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC47431.1"
                     /translation="MITLPASMRVFERGWLSSNNVLFMDDAHETRTALVDTGYATHAP
                     QTLALVRQALASERNERTLDLIVNTHLHSDHCGGNALLQSNFVCETLIPQTEADAVRE
                     WDEDRLTFRGTGQSCERFGFTGTIAPGATLQLGGLDWSVLGAPGHDPHSLMLYCAEER
                     LLISADALWENGFGVIFPELEGESGFAEQRAVLDLIATLDVRAVIPGHGAPFT"
BASE COUNT          620 a          925 c          978 g          562 t
ORIGIN      
        1 ctgctgccgc atacgccgga taccgaaggc atcctgaaca ggcgcacgtt cgcacggctt
       61 gcaccgggcg catatctcgt caacctggcg cgcggcgggc atcttgtcga cgacgacctg
      121 cttcacgcca tgcagaccgg ccagatcgcc gccgcaacac tcgatgtatt ccacaccgaa
      181 ccgttgccgg acaatcatcc gttctggcgc acgccgcgcg ttacgatcac gccgcatata
      241 gccgccgaaa cgctgcgcga agaaagcacg gagcagatcg cgaacaagat catggcgctc
      301 acgcgcggcg agccgatatc cggcatagtc gatgtgaaac gcggctattg agcttaccga
      361 actgcaggga tttatacgta ttcaaaggag acaggcatgc tacccgccaa agtaaaaatc
      421 gtcgaagtgg ggccgcgtga cggcctgcag aacgagaagg aattcgttgc aaccgacgtc
      481 aagatcgaac tggtaaaccg gctggcaaac gcgggtttgc agaacgtcga atcggcgtcg
      541 ttcgtctcgc caaaatgggt gccgcaaatg gcggacggcg cggctgtgat ggccggcatc
      601 gagcggcgtg cgggcacgat ttactcggcg ctcacgccga atctgcgcgg cttcgaatca
      661 gcgctggaag cgaaagtcga tgagatcgtc attttcggtg cagccagcga agcgttctcg
      721 cagaagaaca tcaactgcag cattgcggaa agcatcgcgc gcttcgaacc cgtcgcgaag
      781 gcggcgaaag aagcgggctt gcgcgtgcgg ggcagcattt cgtgcgcgct gggatgtccc
      841 taccagggcg acgtgccgat cgatgctgtc gtcgatgtcg tgcagcgcat gaaggcgctc
      901 ggctgcgatg aaatcgatat tgccgacacc atcggcgtgg gcaccgcggg ccgcacgcgc
      961 gaggtgatgg cggcggtatc gaaggtattt ccacgcgaac ggctctccgg ccatttccac
     1021 gatacctatg gtcaggcggt cgcgaatatc tacgcgtcgt tgcaggaagg cattgagatt
     1081 tttcacgcct cggtggcggg actcggtggt tgtccgtacg cgaaaggcgc gaccggcaac
     1141 gtagcgaccg aggacgtgat cttcctgctg aacgggctcg gcattgatac cggcgtcgat
     1201 cttgatcagc tcgtggaaat cggtgatttc atttcgcagg cgatcggcaa gccgagcgcg
     1261 tcgcgagtgg gacgcgcgtt gctcgcaaaa aaacgcgacg gcgtggcacc ctgcgtttga
     1321 tgaccagctt ataacttcgg aaatgaacac gatgaacgaa acactcgacg ccctgcccga
     1381 atccgctcgc cgcgtggcgc tcttgctgca ggagcgcgga cacaccagtc ccgtcgtgat
     1441 gctcgccgaa accggcaaga catcggctga agcggcggcc ggccttggct gcgcggtcgc
     1501 gcaaatcgcc aaatcgattc tgtttcgccg caagaaagac gacgcgccgg tgctcgtgat
     1561 tgccagcggc gtgaatcgcg tggacgagaa gaaagtggcc gaacgggtcg gcgaactcgc
     1621 ccgcgccgac gccaagttcg tccgcgagaa aaccggctac gcaatcggcg gcgtgtgccc
     1681 gatcgggcat gccacgccgc cgctgacgct gatcgatgaa gacctgctcg cgcttgacag
     1741 cctttgggcc gccgccggtc atccgcacgc agtgttcaac ctgacgccac aggaattggt
     1801 cgcgctgacg ggtgcgccgg tcgccgatgt cgcgttgcgc gagacggtgt gatgactgag
     1861 gccgttgcat cgccgtgtat cgatgtatgc aggatgaatc catcgaccgg gctttgcgac
     1921 ggctgttttc gtacgatcga tgaaatagca ggctggtctt cgttcgatga cccgcaaaaa
     1981 acggcggtcc tgacgcaagt gcaagcgcgc aagaaagggc cgcgcgtggt gcagattggc
     2041 gagcgcttca cggccacgct ggcgttgccg cccgattcca tcaagtcatt cgccacgctg
     2101 gtcaacgatc acaatccgct gcatcacgac gatgcctacg ccgaagccag ccgctttggt
     2161 tccctgatcg catccggcac gcaacccacg gcgcatttga tggcaatgct cgcgacgcat
     2221 ttttccgtct acgcccagcc gctcggcctt gaattcggca tcaagctcgt gcgcgcggtc
     2281 aaggcgaacg acgtgctcgc gatgagctgg caagttaccg ttgcgcactg gaagccgagc
     2341 ttgaacggcg atctcgtgaa cctggaaggc caggcgctga accagcttgg cgagatcgtg
     2401 gtcaaggcga gcgcgactat cgtcgtgatg ccgaaggcgc caaacacatg atcacgttac
     2461 cggcgtccat gcgggtgttt gagcgcggct ggctgtcgtc gaacaacgtg ctttttatgg
     2521 acgacgcaca tgaaacccgc accgcgctgg tcgataccgg ctacgccact cacgcgccac
     2581 agacgctggc actcgtgcgg caagcgcttg ctagtgaacg taatgaacgc acgctcgatc
     2641 tgattgtgaa cacgcatctg cattcggacc attgcggcgg caatgcgctg ctgcaatcca
     2701 acttcgtctg tgagacgctc attccgcaaa cagaggccga cgccgtgcgt gaatgggacg
     2761 aagaccgact cacgttccgt gggaccgggc agtcctgcga gcgcttcggt ttcaccggca
     2821 cgattgcgcc gggggcgacg ctccaactgg gtggcctcga ctggtcggtg ctcggcgcac
     2881 ccggtcacga tccgcattcg ctgatgttgt actgcgctga agaacggctg ttgatcagcg
     2941 ccgacgcgct gtgggaaaac ggcttcggcg tgatctttcc cgaactggaa ggcgagagtg
     3001 gtttcgcgga acaacgcgcg gtgctcgacc tgatcgccac gctggacgtg cgggcggtga
     3061 ttcccggcca tggcgcgccg ttcac
//
LOCUS       DATGBK010001365         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_177840, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001365 DATGBK010000000
VERSION     DATGBK010001365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177840"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..183
                     /locus_tag="VKJ77_19100"
     CDS             <1..183
                     /locus_tag="VKJ77_19100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006160869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HMC47432.1"
                     /translation="VPFPTADATEIRRAATECLKRVPLDRRLRLLGVRVTALLPAGSD
                     VAEPQSVQGELPFAAD"
     gene            221..817
                     /locus_tag="VKJ77_19105"
     CDS             221..817
                     /locus_tag="VKJ77_19105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HMC47433.1"
                     /translation="MFQSDLFDAVPLDLVEDAESGIRYLPDVVPQATAHAWFEQTLGQ
                     VTWGNQRRLMYEREVDVPRLMAHFSLDGPDLPEPLMEAAVQVRAIAGAQFNSVGLNLY
                     RDGNDSVAPHNDKTQGLVQKAPIAILSLGATRRMTIRAKSGKGRTLNVDLHAGSVIVM
                     SYASQFTHNHGIPKMSGVDGPRISLAFRCFDAAALKQR"
     gene            1040..1672
                     /locus_tag="VKJ77_19110"
     CDS             1040..1672
                     /locus_tag="VKJ77_19110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VC0807 family protein"
                     /protein_id="HMC47434.1"
                     /translation="MNNRARYLSAICINVLFPWLAYHLAYPQWGHLGALAASTLPLIA
                     WMTWDLLRLRHFDALSAIVLVGTLFSLAVSSYIDNPRTRLFEEPVISGLIGIAFLISL
                     AFPRPLVFYLGRSTVAREQDEGTAQFEQWWRDNPGLVAVVRKMTLVWGLGLTAENAVR
                     LLLNIEWGDAAWIVSVSTVLRYATYGGLTLWTFLERRRMKRMDPSALPAK"
BASE COUNT          389 a          585 c          597 g          430 t
ORIGIN      
        1 gtcccgtttc caacggccga tgcaacggag atccggcgcg ccgcgaccga gtgcctgaag
       61 cgcgtgccgc tggaccggcg actgcgtttg ctcggcgtac gcgtgacggc gttgctgccg
      121 gcgggatcgg atgtcgccga gccgcaatcg gttcagggtg aattgccgtt cgcggcggat
      181 tgactagcaa aatcccggaa aagtcaggaa aggaatcgtc gtgtttcaaa gcgatttgtt
      241 cgatgccgtg ccgctcgacc ttgtagaaga cgccgaaagc gggattcgtt acctgcccga
      301 cgtggtcccg caagccactg cgcacgcgtg gtttgagcag acgcttggcc aagtgacgtg
      361 gggcaatcag cgccgcctga tgtacgaacg cgaggtcgat gtgccacgct tgatggcgca
      421 tttctcgctg gacgggccag acctgccgga gcctcttatg gaggcagcgg tacaagtgcg
      481 cgcgattgcc ggcgcgcagt tcaacagcgt cggcttgaat ctgtatcgtg atggcaacga
      541 cagcgtcgca ccccataacg acaagacgca agggttagtg cagaaagcgc caatagcaat
      601 cctttcgctg ggcgcgaccc gtcgcatgac aattcgcgcg aagtcgggca agggccgcac
      661 gctcaatgtg gacctgcatg cgggcagtgt gatcgtgatg agctacgcat cgcaatttac
      721 gcacaatcac ggcataccga agatgagcgg tgttgacggg ccgcgcatta gccttgcgtt
      781 tcgatgcttt gatgctgcag cgcttaagca gcgctaggaa ctcagcagtg ttgcttgctt
      841 gaaactcgaa cgaggcgcgc cgaagtttta aggcattctt atcgttttgt tgatgactgc
      901 cgccgtgttc gcggcgcgag ccatctgatg catgaaaacg cctgagacaa cctgaaacac
      961 ttagaacgca ccgtggtatt tttgtttgtc ccgcgccggc aactcggcag ctttgaacct
     1021 cggcactcag gcgattccta tgaacaaccg ggcccggtat ttatcggcga tctgcatcaa
     1081 cgtgctcttc ccatggctcg cctaccacct tgcgtatccg cagtggggcc acctcggagc
     1141 actggctgcc tccacgctac cgttaatagc atggatgacc tgggacctct tacgcttgcg
     1201 ccactttgat gcgctaagcg cgatcgtact ggtcggcacg ctattctcac tggcggtttc
     1261 atcctatatc gacaacccgc gtacgcgcct ttttgaagag cccgtcatct ccggtttgat
     1321 cggcatcgcg tttttgattt cactcgcttt tccgcggccc ctcgtgtttt atctcgggcg
     1381 gtccaccgtc gcccgcgagc aggacgaagg aaccgctcag ttcgagcaat ggtggcgcga
     1441 caatcccggt ctcgtagcgg tcgttcgaaa gatgacgctt gtatggggac tgggtctgac
     1501 ggccgagaat gccgtgcggc tgttgcttaa tatcgaatgg ggagatgcag cgtggattgt
     1561 cagcgtctct actgttctgc gatacgcaac gtatggcggg ttgacgctat ggaccttcct
     1621 cgagagaagg cgcatgaaac gaatggatcc gtcggcattg cccgcgaagt gagcgtgatg
     1681 tagcggttgc aaagcgacga taaaggctcg acccgtcccc ggcatcggcg tgcctggcgg
     1741 atcgaaacgt gaacctgtcg cggcaggaag gcgctgactt tcaactctca ccgcctccct
     1801 gtgatcccta gccaaaacac accgctagtt aaaacgcctc ccaatcagca gtgccggccg
     1861 atgcaacggg cttcgacttc tctttgttca gcgccggtgt cttgagctgt gcggccattg
     1921 caaccggcct cgaactcgaa ctcacagcgg tcgcgcgttt cttcggtacc gccagcgcac
     1981 gatgcgccac gccacgcgcc g
//
LOCUS       DATGBK010001366         1614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_131551, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001366 DATGBK010000000
VERSION     DATGBK010001366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131551"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1002)
                     /locus_tag="VKJ77_19115"
     CDS             complement(<1..1002)
                     /locus_tag="VKJ77_19115"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_function: GO:0050568 - protein-glutamine glutaminase
                     activity [Evidence IEA];
                     GO_process: GO:0006482 - protein demethylation [Evidence
                     IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0018277 - protein deamination [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HMC47435.1"
                     /translation="MTTARSTEPKISVLCVDDSALVRSLMTEIINSQPDMHVCATAPD
                     PLVARDLIKQHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGSEITLR
                     ALELGAVDFVTKPRVGIRDGMLEYSEKLADKIRAAARARVRQTPHVVHAAPGASGAAA
                     ATKPTPNLNNPLVSTEKLIIVGASTGGTEAIRELLVPLPPDAPGVMIAQHMPPGFTKS
                     FAQRLNGLCRIAVKEAEHGERVLPGHAYIAPGDAHLVLVRSGANYVAHLSDAPPVNRH
                     RPSVDVLFRSAAQNAGKNALGVILTGMGRDGAQGMLEMQQAGAYTFAQDEASCVVFGM
                     "
     gene            complement(999..>1614)
                     /gene="cheD"
                     /locus_tag="VKJ77_19120"
     CDS             complement(999..>1614)
                     /gene="cheD"
                     /locus_tag="VKJ77_19120"
                     /EC_number="3.5.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chemoreceptor glutamine deamidase CheD"
                     /protein_id="HMC47436.1"
                     /translation="VLVTVLGSCVAACIHDRSAGIGGMNHFMLPDDGSDASQSSSDSM
                     RYGAYAMEVLINEMIKRGGRRERFEAKVFGGGAVLAGMTTINIGDRNSEFVRRYLALE
                     KIRIVAEDLQGMYPRKVAFMPRTGQAMVKKLITQQDPSVVEREQALARQTPEARSERL
                     AKARARVEMFSRPKATTPDKPRIELFGAAAGLQRTVRTKTAEEA"
BASE COUNT          265 a          525 c          505 g          319 t
ORIGIN      
        1 catgccgaac accacgcagc tcgcttcgtc ctgcgcgaag gtgtacgcgc cggcttgctg
       61 catctccagc atgccctgcg cgccgtcgcg gcccatgccg gtcaggatca cgccgagcgc
      121 gttcttgccg gcgttctgcg cagcggacct gaacagcacg tcaacggaag gacggtggcg
      181 gttgaccggc ggggcatcgg agagatgcgc cacatagttc gcaccgctgc gcacgagcac
      241 cagatgggcg tcgcccggtg cgatgtacgc gtgacccggc agtacacgct cgccgtgctc
      301 ggcttccttt accgcgatcc ggcacaggcc gttcaggcgc tgtgcgaacg acttcgtgaa
      361 gcccggcggc atatgctgcg cgatcatcac gccgggcgcg tcgggaggca gcggcaccag
      421 cagttcgcgg atcgcttcgg tgccgcctgt cgatgccccg acaatgatca gcttctccgt
      481 actcaccagc ggattgttca ggttcggcgt gggtttcgtg gccgctgccg cgccgctggc
      541 gccaggcgcc gcatgcacga cgtgaggcgt ctgccgcacc cgtgcgcggg cggccgcgcg
      601 gattttatcg gcgagctttt cggaatactc gagcatgccg tcgcgaatgc ccacgcgcgg
      661 tttcgtcacg aaatccaccg cgccgagttc cagcgcgcgc agcgtgattt ccgagccgcg
      721 ctccgtcagc gacgacacca tcactaccgg catcggacga agccgcatca gcttttcgag
      781 gaaatcgagg ccgtccatgc gcggcatttc gacatcgagc gtcaggacgt cggggttgtg
      841 ctgcttgatg agatcacgcg cgaccagcgg atcaggcgcg gttgcgcaca cgtgcatgtc
      901 gggttgcgag ttgatgatct cggtcatcag gctgcgcacc agcgccgagt catcgacgca
      961 cagcacgcta attttcggtt ccgtgctccg ggccgttgtc atgcttcctc cgccgtcttt
     1021 gtgcggacgg ttcgctgcag gccggctgcg gcaccgaata attcgatgcg gggtttatcg
     1081 ggtgttgtag ctttgggtcg actgaacatc tcgacacgcg cacgcgcttt tgcaagccgt
     1141 tcgctgcgtg cttcgggtgt ttgccgcgcg agtgcctgct cgcgttcgac cacgctcggg
     1201 tcttgctgcg tgatgagttt cttgaccatg gcctggccgg tgcgcggcat gaacgcgacc
     1261 ttgcgcggat acatgccttg caggtcctca gccacaatgc gaattttttc cagcgcgaga
     1321 tatcggcgca cgaattccga attacgatcg ccgatattaa tcgtcgtcat gcccgccagc
     1381 acagcgccgc cgccgaacac tttcgcttcg aagcgctcgc gccggccgcc gcgcttgatc
     1441 atctcgttga tcagcacttc cattgcatag gcgccgtaac gcatggaatc cgagctcgat
     1501 tgcgacgcgt cggaaccgtc atcgggaagc atgaaatggt tcattccgcc aatgcccgcc
     1561 gagcgatcgt gaatgcatgc cgccacgcat gaaccgagca ccgtgacgag cacc
//
LOCUS       DATGBK010001367         2349 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108736, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001367 DATGBK010000000
VERSION     DATGBK010001367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108736"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..>2349
                     /gene="hrpA"
                     /locus_tag="VKJ77_19125"
     CDS             28..>2349
                     /gene="hrpA"
                     /locus_tag="VKJ77_19125"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HMC47437.1"
                     /translation="MNQQLGSGRPQVKGDSSAAQHAARTSEHAESANQQRGSGRPQDR
                     TESPTVKHLARNPGRGPSARERTRNGPQDVETGASNSPVAQHAAPKPEHAESSAEQQR
                     ARRGPPDAESGAASAASRPAPQGARPPKEARASQNAQQRSNAQTDAVSQQRRDTPRPR
                     RVVEPNPIPPIRFPETLPVSARRDEIAAAIQANQVVIVSGETGSGKTTQLPKICLALG
                     RGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLSPGASVKL
                     MTDGILLAETQTDPLLAAYDTIIIDEAHERSLNIDFLLGYLREILPRRPDLKVIVTSA
                     TIDADRFARHFGSDEKPAPVIEVSGRLYPVEVRYRPVEEDSPAIKAAQGTTPGTQQKD
                     RPDRPDRPRSQRENDRDLMEAIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHH
                     PPHTEILPLFARLSAAEQERVFKTSNARRIVLSTNVAETSLTVPGIRYVVDTGLARVK
                     RYSYRNKVEQLQIEPISQSSANQRAGRCGRVADGVCIRLYEEDDYNLRVRFTDPEILR
                     SSLAAVILRMKSLHLTAIETFPFLEPPPGRAIADGYQLLNELGAVDDDNDLTPLGREL
                     ARLPLDPRVGRMILAARDHQSLREVLIIASALSVQDPRDRPIEAQEQADLAHKKFADE
                     RSEFLQWTKIWAWFEDAIAHKKSNKQLTDACRANFLNHVRLREWRDVHSQLLTVVREH
                     GWRLNESEATFEQIHLALLTGLLGNVGLKADDEP"
BASE COUNT          487 a          731 c          739 g          392 t
ORIGIN      
        1 gcgcgaacgt ccgaacacgc agagtcggtg aaccagcagc tcgggtccgg ccggccgcag
       61 gtcaagggcg attcgtcggc agcacaacat gcagcgcgaa cgtccgaaca cgcagagtcg
      121 gcgaaccagc agcgcgggtc cggtcggccg caggacagga ctgaatcgcc gacggtaaaa
      181 catttagcgc gaaatcccgg gcgtgggccg agtgcgcgag aacgcacgcg caacggcccg
      241 caggatgtag agaccggcgc gtccaattcg ccggtggcgc aacacgcagc gccgaagcct
      301 gaacatgcgg agtcgagcgc cgagcagcag cgggcacgtc gcggcccgcc cgatgccgag
      361 agcggcgctg ccagcgccgc ttcccgcccc gcgcctcagg gcgcccggcc gcccaaagaa
      421 gcgcgtgcgt cccaaaacgc tcaacagcgg tcgaacgcgc aaaccgacgc ggtgagtcag
      481 caacgccgcg acaccccacg tccacgccga gtagtcgagc cgaaccccat tccgccaatt
      541 cgtttcccgg aaacgctgcc cgtctccgct cgacgcgatg agatcgccgc cgcgatccag
      601 gcaaatcagg tcgtgattgt cagcggcgag acgggttccg gaaaaacaac gcagttaccc
      661 aaaatctgtc tggcgctcgg ccgaggtctt ggcgcaggcg gttcggggct gatcggtcac
      721 acgcagccgc gacgcatcgc ggcatcggcg acgggacggc ggatcgctga agaactcggc
      781 acaccgttcg gcgaagtggt cgggtacaag gtgcgcttca cggacaactt gtcgccgggt
      841 gcgtcggtga aactgatgac cgacggcatt ttgctggctg aaacgcagac tgatccgctg
      901 ctcgccgcct acgacacgat catcatcgat gaagcgcatg agcgcagcct gaacatcgac
      961 ttcctgctcg gctatttgcg tgaaatcctg ccgcgacgtc cggatttgaa ggtgatcgtg
     1021 acatcggcaa cgattgatgc cgaccggttc gcccgccatt tcggcagtga cgaaaaaccc
     1081 gcgccggtca ttgaggtgag tggtcggctg tatccggtcg aggtgcggta tcgcccggtc
     1141 gaagaggaca gcccggcgat aaaagccgcg cagggaacca cgcccggcac gcagcaaaaa
     1201 gatcgtccgg atcgtccgga tcgtccgaga agtcagcggg aaaacgaccg cgatttgatg
     1261 gaagcgatcg ttgacgctgt cgatgaactc tgccgcgaag gccccggcga tgtcctcgtc
     1321 tttctccccg gcgaacgcga aatccgcgac gccgccgaag cgttgcgcaa gcaccatccg
     1381 ccgcacacgg aaatcctgcc gctgttcgcg cgcctttccg cggccgagca ggagcgtgtg
     1441 ttcaagacgt cgaacgcacg gcgcatcgtg ctgtcgacga acgtcgcgga aacctcgctg
     1501 acggtgccgg ggattcgcta cgttgtcgat accgggcttg ctcgcgtaaa gcgctattcg
     1561 tatcgcaaca aagtggagca gttgcagatc gaaccgatct cgcaaagctc ggcaaaccag
     1621 cgcgcgggcc gttgcgggcg cgtggccgac ggcgtgtgca ttcgtctcta cgaagaagac
     1681 gattacaacc ttcgcgtgcg gttcaccgat ccggaaatct tgcggtcatc actggccgcg
     1741 gtgatcttgc gaatgaaatc gctgcacctg acggccatcg aaacgtttcc gtttctcgag
     1801 ccgccgccgg gtcgtgcaat cgccgatggt tatcaactgc tgaacgaact cggcgccgtc
     1861 gatgacgaca acgaccttac gccactaggc cgcgaactcg cgcgtttgcc gctcgatccg
     1921 cgcgtcggcc ggatgattct tgccgcgcgc gatcatcagt cattgcgcga agtgttgatc
     1981 atcgccagcg cgttgtccgt tcaggatccg cgcgataggc cgatcgaggc gcaagaacaa
     2041 gcggatctgg cgcacaagaa attcgccgat gagcgttccg aattcctgca gtggacaaaa
     2101 atctgggcgt ggtttgagga tgcaatcgcg cacaaaaaat cgaacaagca gctcaccgac
     2161 gcgtgccgcg cgaacttttt gaatcacgta cgtctgcgtg aatggcgcga tgtgcattcg
     2221 caattgctga ccgtcgtgcg cgaacatggc tggcgtctga acgaatccga ggcgacgttt
     2281 gagcagattc atcttgcatt gctgaccggt ctgctcggca atgtgggtct caaggccgat
     2341 gacgagccg
//
LOCUS       DATGBK010001368         2130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108747, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001368 DATGBK010000000
VERSION     DATGBK010001368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108747"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..644)
                     /locus_tag="VKJ77_19130"
     CDS             complement(<1..644)
                     /locus_tag="VKJ77_19130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007581946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC47438.1"
                     /translation="MKIAILDDYQDAVRKLDCFSLLADHEVKVFNNTVRGLGQLASRL
                     SEVEALVLIRERTRISSQLLDKLPRLRMISQTGKAGGHIELDACTERGIAVLEGTGSP
                     IAPAELTWALIMAAQRRIPQYVANLKQGAWQQSGLKTSALPPNFGLGQVLRGQTLGIW
                     GYGKIGQLLAGYGKAFGMKVVVWGREHSQAAARADGVNVAESREALFEQSDVLS"
     gene            1141..>2130
                     /locus_tag="VKJ77_19135"
     CDS             1141..>2130
                     /locus_tag="VKJ77_19135"
                     /EC_number="4.1.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004611 - phosphoenolpyruvate
                     carboxykinase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0017076 - purine nucleotide binding
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (GTP)"
                     /protein_id="HMC47439.1"
                     /translation="MNQPAVVDQNVVADNDVPAYVKNRKLIDWVQQVAALTKPDRIEW
                     CDGSEEEYDRLSQQMVDAGTLKRLNPAKRPNSYLACSDPSDVARVEDRTFICSARPEQ
                     AGPTNNWIDPAEMRLTLDGLFDGCMSGRTMFVVPFSMGPLGSPIAHIGVELTDSPYVV
                     TNMRIMTRMGRAVYDVLGASGEFVPCVHSVGAPLRQGQKDVPWPCNDTKYIVHFPESR
                     EIWSFGSGYGGNALLGKKCFALRIASTMGRDEGWLAEHMLILGVTSPEGRKYHVAAAF
                     PSACGKTNFAMLIPPQDMAGWKISTIGDDIAWSKPGRDGRLYAINPEAGYFGVA"
BASE COUNT          428 a          628 c          649 g          425 t
ORIGIN      
        1 aacgagagca catcgctctg ctcgaacagc gcttcgcggc tctctgcgac attcacgccg
       61 tccgcacgcg cggcagcctg cgagtgctcc cggccccata ccaccacttt catgccaaac
      121 gccttgccgt aaccggcgag caactggcca atttttccgt atccccagat cccgagcgtc
      181 tggccgcgaa gcacttggcc caggccgaaa ttcggcggta gtgcggaggt cttcagaccg
      241 gactgctgcc acgcaccctg cttcaggttc gcgacgtact gcggaatccg gcgttgggcg
      301 gccatgatca gcgcccaggt cagctcggcc ggcgcgattg gcgaaccggt gccttccagc
      361 acggcaattc ctcgctcggt acaggcgtcg agttctatat ggccgcccgc tttgccggtc
      421 tggctgatca tgcgcagccg tggcagtttg tcgagcagtt gcgagctgat ccgagtgcgc
      481 tcgcggatca aaacgagcgc ttctacttcc gaaagtctgc tagccaactg tccgagcccg
      541 cgcaccgtgt tattgaatac tttcacctcg tgatcggcga gcagactgaa gcaatcgagc
      601 ttgcgaacgg cgtcttggta gtcgtccagg atggcaattt tgattggcat ggattggctt
      661 ttgataggca tcaaacgtgc tgcagaaatt cgaggatgga caggaatcaa cgcggtaagt
      721 tcgggtaatt acggagaaat cgggtaatta cgtataaatt cgccgaaata cgggcttcgc
      781 gtcgcgttaa gctgctggtg taacccgacg aatttaccgg tcgccggatg ggtgttgaaa
      841 gaattcgaat gcggaatacg gcagtttagc cattcacgcg tcgctagcgc cggaaaaccg
      901 gcaacgatgg agacagtccc tatccctttt taacagtttg ttccgtgccg acgcaagccg
      961 cgattcagac ggcagtcgcc accagactag acaactcccc gacgcatgcc ttgtttttgt
     1021 gtcgccgtct gccacgtgaa gttcctccgt gcaggtaaat cggtgactca aaatgcgcct
     1081 ctcgcgagca gcgccggcgg gttgcaaacc gttttctcat ctaagaacgg agtgtgctcg
     1141 atgaaccagc ccgcagtagt agatcaaaac gtggtcgccg acaacgacgt accggcgtac
     1201 gtgaagaacc ggaaactcat cgactgggtg cagcaggtcg ctgcgctgac gaagccggac
     1261 cggatcgaat ggtgtgacgg gtcggaggag gagtacgacc gcctgtcaca gcaaatggtc
     1321 gatgccggca cgcttaagcg cctcaatccc gccaaacggc ctaattccta ccttgcatgc
     1381 tcggacccat ccgacgtcgc gcgggtggaa gaccggacgt tcatctgctc ggcgcgcccg
     1441 gaacaggccg gtccgacgaa caactggatc gatccagccg aaatgcgtct cacgctggac
     1501 ggtctcttcg acggctgcat gagcggccgt acgatgttcg tcgtcccatt ttcgatgggc
     1561 ccgctcggct cgccgatcgc ccatattggc gtggaactga cggacagtcc gtacgtggtg
     1621 acgaatatgc gcatcatgac gcgcatgggc cgcgcagtgt acgacgtgct gggcgccagc
     1681 ggcgagttcg tgccctgtgt gcattcggtt ggcgcgcctt tgcggcaggg acagaaggac
     1741 gttccctggc cgtgcaacga cacgaaatac atcgttcatt ttccggaaag ccgcgagatc
     1801 tggagtttcg gatcgggtta cggcggcaac gcgctgctcg gcaagaaatg tttcgcgctg
     1861 cggattgcat cgacgatggg acgcgacgaa ggctggctcg ccgaacacat gctgattctc
     1921 ggcgtgacgt cgccggaagg gcgcaagtat cacgtcgccg cggcgtttcc gtcggcgtgc
     1981 ggcaagacca acttcgccat gctgattccg ccgcaggaca tggcgggctg gaagatctcg
     2041 acgatcggcg atgacatcgc ctggagcaag ccgggccgcg acggccggct gtacgcgatc
     2101 aaccccgaag cgggttattt cggcgtggca
//
LOCUS       DATGBK010001369         3225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_85361, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001369 DATGBK010000000
VERSION     DATGBK010001369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3225
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85361"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..329
                     /locus_tag="VKJ77_19140"
     CDS             <1..329
                     /locus_tag="VKJ77_19140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DOPA 4,5-dioxygenase family protein"
                     /protein_id="HMC47440.1"
                     /translation="QTWHAHIYFDAATRDAAWQFREEIATHFGDALQLGRFHEKPVGP
                     HPKWSYQLAFERAQFADIVEWLTLNHGALDVFLHPNTGDSLRDHRDAAVWIGHSHELL
                     LDNFMS"
     gene            complement(356..1273)
                     /locus_tag="VKJ77_19145"
     CDS             complement(356..1273)
                     /locus_tag="VKJ77_19145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC47441.1"
                     /translation="MDALDRLIQLSRLQGALDMRCLLSGQWELDHPPAPPSEAIYHVV
                     LAGSCFLKFRGKADLLLETGDIVMLPRGDAHVLQGLEPASGSERGEMESRHNGVVTVR
                     SNCGPNAASLDLLCGRFNYAANALLIDVLPDLVKMSFARADVPDLTRLVGMMRKEASD
                     AAPGAYSIVSALSTALFTLLLRAHLEQQPSTTDVLALLAHPRLGTSVIAMLERPAERW
                     TIEMLAQQSAMSRATYMRTFSALTEDSPMTLLTRIRMQLAGTLLMRTSKSIAEIADNV
                     GYQSESAFSKKFKDTYGVGPGGFRQVRGA"
     gene            1596..2981
                     /locus_tag="VKJ77_19150"
     CDS             1596..2981
                     /locus_tag="VKJ77_19150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC47442.1"
                     /translation="MSTIEQFEYVFLGGGKGGKTLAMELAKSGKRVAVVEEGMIGGSC
                     INVACIPSKALIQTARIMHAVQSADILKGGAHDVKVDMTQVHRRVREVVDGMVDINAK
                     AFEASGFDLILGTGNFVGPRRIQVVLNDGRERVVEGVHVFINTGTYAAIPDIPGLRDA
                     APMTHVDALELDSLPEHLIVIGGGYIGLEMAQAFRRLGSKVTVVQEAPRVAMREDSDV
                     TDAIESILAGEGIDIRVSVKPLQVSGRSGQSVTVELSDNTRVTGTHLLVATGRVPRTA
                     GIGLDVAGVALDERGFIKVDERLATSAPNTWAIGEVAGTPMFTHASFDDYRVLKSQLA
                     GGNLTTRDRVIPYAMFIEPELARIGINESDAQRQGIAVRVAKLPMASIPRARTTGDTH
                     GFMKVIVDAQSDRILGFTMVGSNAGEVVATVQMAMLGNLPYTTVRDAILSHPTIAEGL
                     NMLLAKIPERA"
     gene            complement(3002..>3225)
                     /locus_tag="VKJ77_19155"
     CDS             complement(3002..>3225)
                     /locus_tag="VKJ77_19155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006404683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC47443.1"
                     /translation="PEDLSVIGITDIQLARESRPGLSTVAAPTDAAATMAVELLEALI
                     ESGGRCDTPMRVAPPPVLVQRASTGRVRS"
BASE COUNT          681 a          951 c          971 g          622 t
ORIGIN      
        1 tccaaacctg gcacgcccac atctacttcg acgccgccac ccgcgatgcc gcctggcaat
       61 ttcgcgagga gatcgcaacc catttcggcg atgccttaca actcggccgg ttccatgaga
      121 agcctgtcgg cccgcatccc aaatggtcgt atcagcttgc tttcgagcgt gcgcaatttg
      181 ccgatattgt cgaatggctg acgcttaacc acggagcgct ggacgttttc ctccatccca
      241 ataccggcga ttcgttgcga gaccaccgcg acgcggccgt gtggatcggc cactcgcacg
      301 aactgttgct cgacaacttc atgtcctgac taaagcgtaa agcgatccgc ccaactcaag
      361 ccccccgcac ttgcctgaac ccgcccggcc caaccccata cgtgtcctta aacttcttac
      421 tgaacgccga ttccgactga taacccacat tgtccgcaat ctcggcaatg cttttcgatg
      481 tacgcatcag caaggtcccc gcaagctgca tgcgaatgcg ggtgagcagg gtcatcggcg
      541 agtcttcggt gagtgcgctg aacgttcgca tgtaggtagc gcgtgacatc gccgattgct
      601 gcgccagcat ctcgatcgtc catcgttcag ccggccgttc cagcatggca atcaccgatg
      661 tcccaagccg cggatgcgcg agcagcgcga gcacatcggt ggtggatggc tgctgttcaa
      721 gatgcgccct caacaacaag gtaaacagcg cggtggaaag agccgacaca atggaatacg
      781 cgccgggcgc tgcgtcgctc gcctccttgc gcatcatgcc gaccaggcgc gtgaggtcgg
      841 ggacatcagc acgggcaaag gacattttca cgagatccgg caacacgtcg atgagtaatg
      901 cattcgccgc gtagttaaag cgaccgcata acaaatcgag gcttgcggca ttcggcccgc
      961 aattcgagcg gaccgtcacc acgccgttat ggcgactctc catctcccca cgctcgctgc
     1021 cgctagccgg ttcaagtccc tgcagcacgt gggcatcgcc gcgcggcaac atgacaatat
     1081 cgccggtttc cagcagcagg tccgctttcc cgcggaattt gaggaaacag cttcccgcga
     1141 gtaccacgtg atatatcgct tcgctcggcg gagcgggcgg atggtccagt tcccactgcc
     1201 cgcttagaag gcaacgcatg tcgagcgcgc cttgaaggcg ggataactgg atcagtcggt
     1261 cgagtgcatc catggttggg cggagaggcg caagtagcaa ggcattaacg gcggcttagc
     1321 gatcttaccg gagaacaaag ccatcgatta ttggcggaaa cttgcgcgaa cgccgcctgc
     1381 ctcacgcaat tcgtccgcaa tgaagcgcgg gcaatgagac gaacgagcat ccattcgagc
     1441 cggtttggca tggagatttg gcgctccgaa gtctacattt atgtcatggc gggggcaggg
     1501 ttgtctcgaa acgaacccgc tctctcggca tagtgcgaat cctcccatac cggctcggtt
     1561 cagctatgcg caaacctctg aaagggagct gaaaaatgtc aacgatcgag caattcgaat
     1621 atgtgtttct aggcggtgga aagggcggca agacgctggc aatggaactc gccaaatcag
     1681 gaaagcgtgt ggcggtagtc gaggaaggaa tgatcggcgg ctcgtgtatc aacgtggcat
     1741 gtattccgag caaggcgctg attcaaaccg cgcggatcat gcacgccgtg caatccgcag
     1801 acatattgaa ggggggcgct cacgacgtga aggtagacat gacgcaggtt caccgccgcg
     1861 tgcgtgaagt cgtggacggc atggtcgata tcaacgcaaa agcgttcgaa gcatcgggct
     1921 tcgacctgat cctcggcacg gggaattttg tcggaccacg ccgcattcag gtcgtgctga
     1981 acgacgggcg ggaacgcgtg gtcgagggcg tgcatgtatt catcaacaca gggacatacg
     2041 ccgcgattcc ggatattccc ggcctgcgcg atgccgcccc catgacgcac gtcgacgctc
     2101 tcgaactcga ctcgctgccg gagcatctga tcgtgatcgg cggtggttat atcggtctgg
     2161 aaatggcgca ggcattccgt cggctcggca gtaaggtaac tgtcgtgcaa gaggcgccac
     2221 gggttgccat gcgcgaagat agcgacgtca cggatgccat cgaatcgatc ctggcaggcg
     2281 aagggatcga catcagggtg tcggtcaagc ccttgcaagt cagcggccgc tcggggcaat
     2341 cggtgaccgt tgaacttagc gataacacgc gggtaacagg cacgcatttg ctggtggcga
     2401 caggcagggt gccgcgcacg gcaggcattg gattggacgt ggcgggtgta gcgctcgatg
     2461 aacgtggatt tatcaaagtc gatgagcgct tggcgacgtc ggcaccgaac acgtgggcaa
     2521 ttggtgaagt agcaggaacg cccatgttca cccatgcttc attcgatgac tatcgggtgc
     2581 tcaaatcaca actcgccggc ggcaatctga ctacgcgtga tcgcgtcatt ccgtacgcca
     2641 tgttcatcga accggagctt gcgcggattg gtatcaacga aagcgatgcg caacggcaag
     2701 gcatcgctgt gcgcgtggcc aagctgccga tggcatccat cccccgtgct cgcaccactg
     2761 gcgacacgca cggcttcatg aaggtgatcg ttgatgcgca gtcggatcgc attctcggtt
     2821 tcacgatggt cggttcgaat gcgggcgaag tggtggcgac cgtgcagatg gccatgctcg
     2881 gcaatcttcc gtacaccacg gtccgggatg cgatcctctc gcacccgact atcgcggaag
     2941 ggctgaacat gttgctcgcg aagatccctg aaagggctta atagcgcttc atgtcagggc
     3001 ttcaactgcg cacccgtccc gtcgatgctc tttgcaccag cacgggcggg ggtgccactc
     3061 gcatgggcgt gtcgcagcgg ccgccgcttt cgatcaacgc ctccagcaat tcgacggcca
     3121 tggtagcggc ggcgtcggtc ggagcggcaa ccgtcgacaa ccccggccgc gactcgcgcg
     3181 ccagttgaat gtcggtgatc ccgatcacgg acaggtcctc cggaa
//
LOCUS       DATGBK010001370         1658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_131593, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001370 DATGBK010000000
VERSION     DATGBK010001370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131593"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1658)
                     /locus_tag="VKJ77_19160"
     CDS             complement(<1..>1658)
                     /locus_tag="VKJ77_19160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HMC47444.1"
                     /translation="RSVGALIDVYLVCRGIVIASGFFIAPRAPGLRLIQMQDDAARFA
                     HDWLVRIVCVAGAGSALAEAAAPLGLTDTAHDSILKAVALVVHVLVAIVILRCRVPVA
                     AWIRESVKGRRSFVLLGNWVADVWAGLAVFFVLALWFVWALDVRNGYRTLFHLFGISV
                     LVLVAARVVAIVAFGALGRIFHTAGGDDDLSNKSIAHRHAYRYYPLLRRTVQTVIIVI
                     TLLTLLQVWGLHALTLFSSGGVGHRLASALITIGVAAAFAVIVWEGANVMVEQRLETW
                     TTSGDRLRAARLTTLLPMMRSALFIVIAMVVVLTGLSEIGVNTAPLLASASIFGVALG
                     FGSQKLVQDLITGIFLLMENAMQVGDSVTLAGVSGTVEYLSIRTVRLRGSDGSLFTVP
                     FSSVSTVNNTNRGIGNAAVRVSIALGQDVNLAADTLKEIGASLREDDAFKDGILSDFS
                     LWGVDAVDGSSVTLAGQIQCRDSARWGVQREFNRRIVDRFTERGIEIANPQRNFVIVK
                     GGDAGELAAAFEGDQRGDSSTDANVNVNARADANADQRGERTIT"
BASE COUNT          351 a          578 c          475 g          254 t
ORIGIN      
        1 ggtgatggtg cgctcgccgc gttgatcggc attggcatcg gcgcgggcat tcacgttcac
       61 attcgcatcg gttgaggaat cgccacgctg atctccctcg aaggctgcag ccaactcacc
      121 cgcgtctccg cccttcacga tcacgaaatt tcgctgcgga ttcgctatct cgatgccgcg
      181 ttccgtgaag cggtccacaa tgcgccggtt gaattcgcgc tgcactcccc agcgcgcgct
      241 atcgcggcac tggatctggc cggcgagcgt gacgctcgac ccatcgaccg catccacgcc
      301 ccacaggctg aagtcggaga ggatgccgtc cttgaacgca tcgtcctcac gcagcgacgc
      361 gccgatctcc ttgagcgtat ccgccgccag gttcacgtcc tgtccaagcg caatgctcac
      421 gcgtaccgcg gcattgccaa tgccgcgatt cgtgttgttc accgtcgata ccgaactgaa
      481 cggcaccgtg aacagcgagc cgtcgctgcc ccgcaaacgc accgtacgga tcgacagata
      541 ttcgaccgtc cccgacaccc ccgcgagcgt gaccgagtcg cccacttgca tcgcgttctc
      601 catcaacagg aagatgccgg tgatcaaatc ctgcacgagc ttttgcgagc cgaaacccag
      661 cgccacgccg aagatgctcg cgctcgcgag cagcggcgcg gtgttgacac cgatctcgct
      721 taaccccgtc aacacgacga ccatcgcgat cacgataaag agcgcactgc gcatcatcgg
      781 cagcagggtc gtgagacgcg cggcccgcaa acggtcgccg ctcgtggtcc atgtttccag
      841 tcgttgctcg accatcacgt tcgcgccttc ccacacgatc acggcgaacg cggcagcaac
      901 cccgatggtg atgagcgcgg acgcaagccg atgacccact ccgcccgacg aaaacagtgt
      961 cagggcgtga agcccccaga cctgcagcag ggtcagcaac gtaatcacga tgatcaccgt
     1021 ctgcacggtg cgccgcagca gcgggtaata gcggtaggcg tgccgatgcg cgatcgactt
     1081 gttcgacagg tcgtcatcgc cgccggccgt atgaaaaatg cggccgagcg cgccgaacgc
     1141 gacaatagca actacgcgcg ctgccaccag cacgagcact gagatgccaa acagatgaaa
     1201 cagcgtgcga tacccgttgc gtacatcgag cgcccagacg aaccacagcg ccagcacgaa
     1261 aaacaccgcg agcccggccc agacatcagc gacccaattg cctagcagta cgaatgaccg
     1321 acgtcccttg acactctcgc gaatccaggc agcgaccggc acgcggcatc tgaggattac
     1381 gatggcgacc agcacatgca cgaccagcgc gaccgccttg aggatcgagt cgtgggcggt
     1441 gtcggtcaga cccagcggcg ccgcggcttc cgcgagcgcc gagcctgctc ccgccacgca
     1501 cacgatgcgc accagccagt catgcgcgaa gcgcgcggca tcgtcttgca tctggatcag
     1561 gcgcaaaccc ggcgcgcggg gcgcgatgaa gaaaccactt gcgatcacaa tgccgcggca
     1621 caccaggtac acgtcgatca acgcgccgac agaacggc
//
LOCUS       DATGBK010001371         1713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_39952, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001371 DATGBK010000000
VERSION     DATGBK010001371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39952"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1713)
                     /gene="mprF"
                     /locus_tag="VKJ77_19165"
     CDS             complement(<1..>1713)
                     /gene="mprF"
                     /locus_tag="VKJ77_19165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional lysylphosphatidylglycerol
                     flippase/synthetase MprF"
                     /protein_id="HMC47445.1"
                     /translation="PEMLAALLAYRAIYFGLPLIAAAFVLAAFEGRALKGRFAFLNPS
                     NVSQLAPVFLSVVTFVVGGMLVISGATPAFGKRIAVLQAVLPLWVLESSQLLGSVLGV
                     VLLFVARGLLRRLDAAWWLAITLAVANLALSMAKGLAFVETGVLAVLIVLLLATRDRF
                     SRRSSLLAERFTASWLVSVAIVIGLAVWIMLFAFRDVNYSRDLWWQFAFDERAPRALR
                     ATLAAGLFAALFAVWQLLRPAAGRFEKPAPQDLLDAARIFRAQERSDAGLAMMGDKSF
                     LFSTSREAFLMYAKHGRTWAALHDPVGPRREWAELIRRFVEMAHAHNGRAAFYQVRAD
                     ALPLYLDAGLTLMKLGEEAHVVLEDFDLKGSHRAHLRYALKRGERDGFDVEIIDSPRV
                     PECMPILREISDAWLGSREAREKSFSVAAFTDDYLAAQSVLLVRQEGKPVAFVTFMTT
                     DLNTEATVGVMRHQPDASPYAMEYLFTKLALHLKQAGFQTLSLGIAPLSGMQPTPLAS
                     PWHRLAGLVWRFGGRFYNFRGLRGFKSKFQPRWEPRYLAASGSVGVFFTLADLSLLAG
                     GWRS"
BASE COUNT          389 a          580 c          512 g          232 t
ORIGIN      
        1 atgaacgcca gcctcccgcc agcaacgaga gatctgcaag cgtgaaaaac acaccgaccg
       61 agccggatgc cgccagatag cgcggctccc aacgcggctg gaacttgctc ttgaaaccgc
      121 gcaagccccg gaaattatag aaacgcccgc cgaaccgcca gaccaaccca gccagccgat
      181 gccacggcga agcaagcggt gtcggctgca tgccggacaa aggcgcaatg cccaggctca
      241 aggtctggaa cccggcctgc ttcaaatgca gcgcgagctt cgtgaagaga tattccattg
      301 catacggcga cgcgtcaggc tgatgccgca tcacgccgac cgtagcctca gtgttcagat
      361 cggtcgtcat gaacgtgacg aacgccaccg gcttgccttc ctgacgcacc agcaacacgg
      421 actgcgcggc gaggtaatcg tcggtgaagg ccgcgaccga gaagctcttt tcgcgcgcct
      481 cgcggcttcc gagccatgca tcggaaatct cgcgcaggat gggcatgcat tcaggaacgc
      541 gtggggaatc gatgatttcc acgtcgaaac cgtcgcgttc gccgcgcttc agcgcgtagc
      601 gcaaatgggc gcgatgcgat cccttcaggt caaaatcttc cagcaccaca tgcgcctcct
      661 cgccgagttt catcagcgtg agaccggcat cgaggtaaag cggcagtgcg tcggcgcgaa
      721 cctgataaaa cgcggcgcga ccattgtgcg catgcgccat ttccacgaac cggcggatca
      781 gttccgccca ttcgcggcgc ggcccgaccg gatcgtgcag cgccgcccag gtccggccgt
      841 gtttcgcgta catcaggaac gcctcgcgcg aggtcgagaa caggaaactc ttgtcgccca
      901 tcatcgcgag gccggcgtcg ctgcgttcct gcgcgcggaa aatgcgcgcg gcatcgagca
      961 gatcctgagg cgcgggtttc tcgaaccggc cggcagccgg acgcagcaac tgccacacgg
     1021 cgaaaagcgc agcgaacaag cccgccgcga gcgtcgcgcg caacgcgcgc ggcgcgcgtt
     1081 cgtcgaaggc gaattgccac cagagatcgc ggctgtaatt gacatcacga aaagcgaaca
     1141 acatgatcca gaccgccagc ccgatcacga tcgcgaccga caccagccag ctcgccgtga
     1201 accgttcagc cagcagcgac gagcgccggc taaagcggtc gcgggtggcg agcaacaaca
     1261 cgatcagcac tgcgagcaca cccgtttcga caaacgccag ccccttcgcc atcgacagcg
     1321 ccaggttggc caccgcgagc gtaatggcga gccaccaggc agcatcgaga cggcgcagca
     1381 aaccgcgcgc aacaaacagc agaactacgc ccagcacgct tccgagcagt tgcgagcttt
     1441 cgagcaccca cagcggcaat acggcttgca gcaccgcgat acgcttgccg aacgcgggcg
     1501 tggcgcctga aatcacgagc atgccgccga ccacgaaggt caccacgctc aagaacacgg
     1561 gcgcgagctg cgacacattc gatggattca gaaacgcgaa acgtcccttg agcgcacggc
     1621 cttcgaacgc tgccagcacg aacgcggcgg cgatcagcgg caggccgaaa tagatcgcgc
     1681 gatacgccag cagcgccgcc agcatctcgg gcg
//
LOCUS       DATGBK010001372         3855 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_131614, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001372 DATGBK010000000
VERSION     DATGBK010001372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3855
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131614"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            123..719
                     /locus_tag="VKJ77_19170"
     CDS             123..719
                     /locus_tag="VKJ77_19170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HMC47446.1"
                     /translation="MTIDKNRRMVVGISGASGFIYGVRLLELLRGLDVETHLIISRAA
                     LLTMTHETHYKFADVSALAATTHRCDDLAAGIASGSFRTMGMIVAPCSMKTLAEIANG
                     MSLGLISRAADVTLKERRPLVLLARETPLTLAHLRNMTAVTEMGAIVAPPVPAFYTRP
                     QSLEQVIDHTLGRVLDLFGLETGTVTRWREAVEEPLTA"
     gene            778..1851
                     /locus_tag="VKJ77_19175"
     CDS             778..1851
                     /locus_tag="VKJ77_19175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006396422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HMC47447.1"
                     /translation="MNTIHMTHHEAEKIPVTILAGFLGAGKTTLLNYILRENHGRKIA
                     VIENEFGEIGIDGGLVLESTEEIYEMTNGCVCCVGAVREDLVRIVRTLIDRPERLDHI
                     IVETSGLADPYPVAQTFFLDDPIAKQVTLDAVVTMVDAKHIAAHLDDILLDGSDNQAV
                     DQIVCADRIVINKVDLVSEQEVATLTTRIRALNATADIVPSSYALIDLGKILGVGASE
                     FSQQLVETGGLSGHEHEHEDHDHHEHADEHEHEHEHDASVSSVGIEVSAEVDLDALQD
                     WLAQLRVSDASKLFRTKGILAVQGQPCRYVLQGVHNVIELRAAQAWGSEPRTSRIVFI
                     GRDLDRAELTDRFHACLGAPITA"
     gene            1973..3310
                     /locus_tag="VKJ77_19180"
     CDS             1973..3310
                     /locus_tag="VKJ77_19180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleobase:cation symporter-2 family protein"
                     /protein_id="HMC47448.1"
                     /translation="MNTAPHPVDQRLPKRQVITLGLQHMLVAYIGAIAVPLIVASALK
                     MSSADTTILISTALFCSGISTLLQTIGFWKFGVRLPILQGVAFSSVGPVIAIGSNPNV
                     GFAGVCGAVIGAGLFTLFAAPLIGRLRRFFPPVVTGCIVTVIGLQLFPVAYEWAAGGR
                     QNPQFGASPFLLVALFVALVILAVNRFGSPFLRNLSVLIGLIAGGIVACLLGMGNYSG
                     VRSAPWFTVPYPFHFGTPVFAVVPVLTMIVVMVVQMVESMGLFIAIGGIVDKQVTEED
                     VVRGLRANGLASAIAGMFAAFPFIAFMENVGLVILTGVRSRWVVATSGALMCIVALVP
                     KIGSVVAATPAAALGGAGIAMFGVVVAAGVQTLSKVDFESNRYNVLIVGFTIATALIP
                     VMAPEVFKQMPEWTQPFLHSGVVLACLVSVALNAVLNGTHDEVVAETHQLVRE"
     gene            3379..>3855
                     /locus_tag="VKJ77_19185"
     CDS             3379..>3855
                     /locus_tag="VKJ77_19185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006411325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC47449.1"
                     /translation="MSTQSEALLIKNPIAVMSGLRGERARLGQVDVRVRAGRIEEIGP
                     QLVARENERVIDASSCVVYPGWVNTHHHLFQNLLKAVPAGINADLQEWLAAVPYPRLA
                     RFTTDLARIAARLGLAELLLSGVTTCADHHYLYHAKGTTETGDLLFEEAAAFGMRFV"
BASE COUNT          724 a         1174 c         1191 g          766 t
ORIGIN      
        1 tcgcgcatgg gtattgatgc gactcgcggg tccacgttcg acggcattcg cgcacgcatc
       61 ggcgaacgtg cgatcgagca tgcgcgttca ttgcttgcgg gtcttgagcg cggagtgccg
      121 gcatgacgat cgataaaaac cgccgcatgg tggtcggcat cagcggtgca tcgggattca
      181 tctacggcgt gcgcttgctt gaactgcttc gaggactgga tgtggaaacg cacctgatca
      241 tctcgcgggc ggcccttctt acgatgacgc acgagaccca ttacaaattc gccgatgtca
      301 gcgcgctcgc tgccacgaca catcggtgcg acgacctcgc agccggcatc gcaagcggct
      361 cgttccgcac gatggggatg attgtcgcgc cctgctcgat gaagacactt gccgaaattg
      421 ctaacggcat gtcgctcggc ctgatttcaa gagcagccga cgtaacgctg aaagaacgcc
      481 ggccgcttgt cctgctcgcg cgcgagacac cgctcacgct ggcgcatctg cgcaacatga
      541 ccgccgtgac cgagatgggc gccatcgtgg cgccgcccgt tcccgcgttc tatacccggc
      601 cgcaatcgct cgaacaagtg atagatcaca cgctcggccg tgtgctcgac ttgttcggac
      661 tcgagacagg caccgttacg cggtggcggg aagccgtcga agaaccgctt actgcgtgaa
      721 gttcgcatga agcttggcca cgcatcagca gtcagtatga ccaccaggag acgatcgatg
      781 aacaccatcc acatgaccca tcatgaagcc gagaaaattc cagtcaccat tttggccggc
      841 ttccttggcg cgggcaaaac aacgctgctg aactacatcc tgcgcgaaaa ccacggccgc
      901 aagattgccg tgatcgaaaa cgagttcggc gaaataggta ttgacggcgg tctcgtgctt
      961 gaatcgaccg aggaaatcta cgagatgacg aacggctgtg tctgctgtgt cggcgcggtg
     1021 cgcgaggatc tggtgcgcat cgtccgcaca ctgatcgaca ggcccgagcg gctcgatcac
     1081 atcattgtgg agacgagcgg tcttgccgat ccgtatccgg tcgcgcaaac cttcttcctc
     1141 gacgatccaa tcgcgaaaca ggtcacgctc gacgccgtcg tgacgatggt ggacgcgaag
     1201 catatcgcgg cacatctgga cgacatcctc ctcgacggtt ctgacaatca ggcagtagac
     1261 cagatcgtgt gcgcggaccg cattgtgatc aacaaggtag accttgtgag cgagcaggaa
     1321 gtggccaccc tgaccacacg gattcgcgca ttgaacgcca ccgccgacat tgtcccgtcg
     1381 agctacgcac tgatcgacct gggaaagatc cttggcgtcg gcgcctccga gttctcacag
     1441 cagctggtcg aaacgggcgg actctccggg catgagcatg agcatgagga tcacgatcac
     1501 cacgagcacg cagatgagca cgaacacgaa cacgaacacg acgccagtgt ctcgtcggta
     1561 ggtatcgagg tatccgccga ggtcgacctc gacgcattgc aggactggct cgcccaacta
     1621 cgcgtatcgg atgcgagcaa gctgtttcgc acgaagggca ttcttgccgt gcaagggcaa
     1681 ccctgccgct acgtgctgca aggcgtgcac aacgtgatcg agctgcgcgc ggcgcaggcc
     1741 tggggtagcg agcctcggac cagccgcatt gtttttatcg gccgcgatct cgatcgtgcc
     1801 gagctgaccg accgcttcca tgcctgtctc ggcgcaccta taacggcctg acgggttgaa
     1861 cagccggccc gcggatgact cgtggcgcga ctgctgccaa aacgacgcgt gcaaacgcgc
     1921 acttgtgccg cggaccgcgg gctggtcaat aacgaaatcc aggagacatt cgatgaacac
     1981 cgccccacac cctgtcgatc agcgcctgcc gaagcgccag gtgattacgc tcggactgca
     2041 gcacatgctg gttgcttata tcggcgcgat tgccgtgccg ctcatcgttg cgtcggcgct
     2101 caagatgtcg tccgccgata cgaccatcct gatcagcacc gcgctttttt gctcgggtat
     2161 ctcgaccctg ctgcagacca ttggtttctg gaaattcggc gtgcgcttgc cgatcctgca
     2221 aggcgttgcg ttcagcagtg tcggaccggt gatcgccatt ggctcgaatc cgaatgtcgg
     2281 cttcgcgggc gtgtgcggcg ccgtgatcgg ggcgggtttg ttcacgctgt tcgccgcccc
     2341 cctgatcggc cggctgcgac gcttctttcc tccagtcgtg accggttgca tcgtgacagt
     2401 gatcggcttg cagttgtttc cggtggccta tgagtgggca gcgggcggac ggcagaaccc
     2461 ccaattcggc gcatcgccat tcctgctggt cgcgctgttc gtcgccctcg tgatactcgc
     2521 ggtcaatcgc ttcggctcgc cgttcctgcg caacttgtca gtgttgatcg ggctcattgc
     2581 cggcgggatt gtcgcgtgtc tgctcgggat ggggaactac agcggtgtca ggagcgcgcc
     2641 gtggttcacc gtcccttatc cgttccactt cggcacgccg gtattcgccg tcgtgccggt
     2701 gctgaccatg atcgttgtca tggtcgtgca gatggtcgag tcaatgggac tcttcatcgc
     2761 gatcggcggg attgtcgaca agcaggtcac cgaggaagac gtcgtgcgcg gcctgcgcgc
     2821 taacgggctt gccagcgcca ttgcaggcat gttcgcggcg tttccgttta tcgcgttcat
     2881 ggagaacgtc gggctcgtga tcctcacggg cgtgcgaagc cgctgggtgg ttgccaccag
     2941 cggagcgctg atgtgcatcg tggccttggt gccgaagatt ggctcggtcg tcgcagcaac
     3001 gcctgccgcc gcgctcggcg gagcggggat cgccatgttc ggcgtggtcg tggcagcggg
     3061 cgtgcagacg ctctcgaagg tcgacttcga aagcaatcga tacaacgtgc tgatcgtggg
     3121 cttcacgatc gcgacagcgc tgattcccgt gatggcaccc gaggtattca agcagatgcc
     3181 cgagtggacc cagccgttcc tgcatagcgg cgtcgtgctc gcctgtctcg tctccgtggc
     3241 gctcaatgca gtgcttaacg gcacgcacga cgaggtcgtg gccgagacac atcaactggt
     3301 ccgggaataa gtcaaatcga atcgtgcggc ggccgtctct gcgccgctgc aggaaatgcg
     3361 ttgcaaggag aaacgaacgt gagcacccag agcgaagccc tgttgatcaa gaatccgatt
     3421 gctgtcatga gcggcctgcg cggcgaacgc gcccggctcg gtcaagtcga cgtgcgcgtt
     3481 cgcgcgggac ggatcgagga aatcggtccg caactcgtgg cgagagaaaa tgaaagagtc
     3541 atcgacgcca gttcctgcgt cgtctatccg gggtgggtca acacgcatca tcacctgttc
     3601 cagaacttgc tgaaggcggt ccccgccggt ataaacgccg atcttcagga atggctcgct
     3661 gcggtgccgt accctcggct cgcgcgcttt acaacggacc tcgctcgcat cgccgcccgg
     3721 ctggggctgg cggaactcct gctttcgggt gtgaccacct gcgccgatca tcattatctt
     3781 taccacgcaa aaggcacgac agaaaccggc gaccttctgt tcgaggaagc cgctgcgttc
     3841 ggcatgcgct tcgtg
//
LOCUS       DATGBK010001373         1562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_39993, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001373 DATGBK010000000
VERSION     DATGBK010001373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39993"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..440
                     /gene="cobO"
                     /locus_tag="VKJ77_19190"
     CDS             <1..440
                     /gene="cobO"
                     /locus_tag="VKJ77_19190"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018442736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HMC47450.1"
                     /translation="GHGMRVGVVQFIKGALHTSERDFLGAIANCDFITMGDGYTWDTQ
                     NRDADIATARKGWDAARKMIESGEYQMVVLDELCTVLKYEYLPLDEVLAVLTARPEML
                     HVVVTGRHAPEALIEVADLVTEMRPIKHPYREQGVKAQRGVEF"
     gene            442..>1562
                     /locus_tag="VKJ77_19195"
     CDS             442..>1562
                     /locus_tag="VKJ77_19195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042242 - cobyrinic acid a,c-diamide
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyrinate a,c-diamide synthase"
                     /protein_id="HMC47451.1"
                     /translation="MRACPALFISAPASNQGKTTVTAGLARYHARQGLRVRVFKTGPD
                     FLDPMILERASGAPVYSLHLWMVGESGCRALLAQTAQEADLILIEGVMGLFDGTPSSA
                     DLATTFGVPVLAVIGAHGMAQTFGAMAFGLARYRADLPFYGVLANRVASARHAQMLSE
                     AIPEGIRYCGHLSSTDDIALPGRHLGLTQAAEVEDIDARLDRAADAIGETTLCELPPA
                     VMFNHETLNQPPRLLEGMHIAIARDAAFSFIYPANLDLLEAMGATLAVFSPLADEPVP
                     AHANALYLPGGYPELHAARLAANAVSAASICAHVEAGKAVVAECGGMLYLLDSLTDID
                     GSQHAMLALLPGQAKMQKRLARLAMQRVESRHGTHTGHT"
BASE COUNT          278 a          499 c          496 g          289 t
ORIGIN      
        1 tgggccacgg catgcgggtc ggcgtggtgc agttcatcaa gggtgcgctg catacgtccg
       61 aacgcgattt ccttggcgca attgcgaact gcgatttcat caccatgggc gacggctaca
      121 cgtgggacac gcagaatcgc gatgccgata tcgcgacggc tcgtaaaggc tgggatgctg
      181 cgcgcaagat gattgaaagc ggcgagtatc agatggtcgt gctcgacgaa ctctgcacgg
      241 tgctcaaata cgaatacctg ccgctcgacg aagtgctcgc ggtgctcacc gcgcggcccg
      301 agatgctgca cgtggtcgtg acgggccgcc atgcgcccga ggcgctgatc gaagtggccg
      361 atctcgtgac ggagatgcgc ccgatcaagc atccgtatcg cgagcaaggg gtgaaggcgc
      421 aacgcggcgt cgagttctga cgtgcgcgcc tgccccgctt tattcatcag cgcgcccgca
      481 tcgaaccagg gcaagaccac cgtcaccgcc gggctcgcgc gctatcacgc gcggcaaggc
      541 ttgcgggtgc gggtcttcaa gaccggcccc gacttcctcg atccgatgat cctggaacgc
      601 gcgtccggcg cgcccgtcta ttcgctgcat ttgtggatgg tcggcgaaag cggctgccgc
      661 gcgctgctcg cacaaacggc gcaggaagcc gatttgatcc tgatcgaagg cgtgatgggc
      721 ctcttcgacg gcacgcccag cagcgccgat ctcgccacca cgttcggcgt gccggtactc
      781 gccgtgatcg gcgcgcacgg catggcgcag accttcggcg caatggcgtt cgggctcgcg
      841 cgctatcgcg cggatctgcc cttctacggt gtgctcgcca atcgcgtggc gtcggcacgg
      901 catgcgcaaa tgctgagcga agccattcct gaaggcattc gatattgcgg gcatctgtcg
      961 agcaccgacg acattgcgct acccggacgg cacctgggtc ttacccaagc ggcggaggtt
     1021 gaggacatcg atgcccgtct ggatcgcgca gcggacgcta tcggcgagac gacgttgtgc
     1081 gagctgccgc ctgcggtcat gttcaatcac gaaaccctca accagccgcc gcgtttgctg
     1141 gaaggcatgc atatcgccat cgcccgcgat gctgcgtttt cgttcatcta ccctgcgaat
     1201 ctcgatctgc tggaagcgat gggcgcaacg ctcgcggttt tctcacccct cgccgatgaa
     1261 cccgtccccg cgcatgccaa tgcgctttat ctgccaggcg gatatccgga actccacgct
     1321 gcccggcttg ccgcgaacgc agtgagcgct gcctcgattt gcgcgcatgt ggaggcgggc
     1381 aaagcggtag tcgcggaatg cggcgggatg ctgtatctgc tcgattcgct gacggatatc
     1441 gacggttcgc agcatgcgat gcttgccctt ctgccgggcc aagcgaaaat gcagaaacgc
     1501 ctggcccggc tagccatgca acgtgttgaa agccgccacg gcacccacac cggtcacacc
     1561 tt
//
LOCUS       DATGBK010001374         2202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_201665, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001374 DATGBK010000000
VERSION     DATGBK010001374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201665"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..515
                     /locus_tag="VKJ77_19200"
     CDS             <1..515
                     /locus_tag="VKJ77_19200"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HMC47452.1"
                     /translation="QHITEILLCYPGIWAMTHHRLAHALHRLGVPLLARFINEIAHSA
                     TGIDIHPGATIGPSFFIDHGTGVVIGETAVIGQHVRVYQAVTLGAKSFPAGNDGVLVK
                     GNARHPVVEDEVVIYAGATILGRVTIGRGSVIGGNVWLTHSVPPGSNVSQGKIREGGA
                     GDAPDDGQGA"
     gene            complement(541..1197)
                     /gene="folE"
                     /locus_tag="VKJ77_19205"
     CDS             complement(541..1197)
                     /gene="folE"
                     /locus_tag="VKJ77_19205"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HMC47453.1"
                     /translation="MSATRNSPNASSDIHDHTDHADRPSREEAEAAVRVLIRWAGDDP
                     AREGLVDTPSRVIRSYEEFFAGYAQNPRDILARTFSEVQGYDEMIVLKDIRFESYCEH
                     HMVPIIGRAHVAYLPRERVVGISKLARLVDAFAKRLQIQEKMTAQIADTLEEVLQPLG
                     VGVILEATHQCMSTRGVHKAGASMVTSRMLGTFRDDPSTRREFLSIVGHSSAFSVSNN
                     "
     gene            complement(1310..1531)
                     /locus_tag="VKJ77_19210"
     CDS             complement(1310..1531)
                     /locus_tag="VKJ77_19210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47454.1"
                     /translation="MTDKQTDTNYAGRSQEERRAQRKGEKQRAQEQPGGHLAQEGTEP
                     DKHHSSGKLSEEGKKVWQTGSGIDGGGKT"
     gene            complement(1719..>2202)
                     /locus_tag="VKJ77_19215"
     CDS             complement(1719..>2202)
                     /locus_tag="VKJ77_19215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC47455.1"
                     /translation="GEMGPTTSVSVEGFNNALAINLTSAFLGAKHQIPAMLGHGGGSI
                     IFTSTFVGYSFAFPGTASYAASKAGLIGLTQALAAEYGAQGIRVNAVLPGAVDTPMYR
                     DMNDTAESQTFITNLHALKRVATPEELARSVLYLASDDSSFVTGTASLVDGGASITRT
                     "
BASE COUNT          396 a          642 c          701 g          463 t
ORIGIN      
        1 cgcagcacat cacggaaatc ctgctttgct atcccggcat ctgggccatg acgcatcatc
       61 gtctggcaca tgcgttgcat aggctcggcg taccgttgct cgcgcgcttc atcaacgaga
      121 tcgcgcactc ggctacgggg atcgacatcc atccgggcgc gacgatcggg ccaagttttt
      181 tcatcgatca cgggacgggc gtggtgatcg gcgagaccgc ggtgatcggc cagcacgtgc
      241 gcgtgtatca ggccgtgacg ctgggcgcga agagctttcc ggcgggcaac gacggcgtgc
      301 tggtgaaggg caacgcgcgc catccggtgg tggaagacga ggtggtgatc tatgccggcg
      361 cgaccattct cggacgcgtg accattggac gcggttcggt gatcggcggc aacgtgtggc
      421 tcacgcatag cgtgccgccg ggtagcaacg tctcgcaagg caagatccgc gaaggcggtg
      481 caggcgacgc gccggacgat ggtcaaggcg cgtgaacttc aatgagcctc agcgagcttg
      541 ttaattgttc gacacgctga acgcgctcga atgtccgacg atggaaagga attcgcggcg
      601 cgtggacggg tcgtcgcgga acgtgcccag catccgcgat gtcaccatcg acgcacctgc
      661 tttatgcacg ccgcgcgtgg acatgcattg atgcgtggct tccaggatta cgccaacgcc
      721 tagcggttgc aggacttctt ccagcgtgtc ggcgatttgc gcagtcatct tttcctggat
      781 ctgcagacgc ttcgcgaagg catcgaccag acgcgccagc ttcgaaatgc ccaccacgcg
      841 ctcacgcggc aaatacgcca cgtgcgcccg gccgatgatt ggcaccatgt gatgttcgca
      901 gtaactttcg aagcggatgt ccttgagcac gatcatctcg tcgtagccct gcacctctga
      961 aaaggtgcgt gccaggatgt cgcgcggatt ctgcgcataa cccgcgaaga actcttcgta
     1021 agaccggatg acgcgtgaag gggtgtcgac cagtccctcg cgggcaggat cgtccccggc
     1081 ccagcggatc agaacgcgga cggcggcttc agcttcttcg cggctcggac gatcggcgtg
     1141 atcagtatga tcgtggatgt ccgaagacgc gttgggggag ttgcgcgtgg cgctcatcga
     1201 gggctccaga tgcagggtgc aaagtcatga agctctcatt gttccacgtt ttacccgttg
     1261 gaagaccctg gtggaatgtc aggtatgtca gggtcaatca ggcggctaat caagttttac
     1321 ctccgccatc gattcccgag cccgtctgcc agaccttttt tccttcctcc gatagcttgc
     1381 ccgagctgtg atgcttgtcc ggttcagtgc cttcctgcgc cagatgaccg ccgggttgtt
     1441 cctgcgcgcg ctgcttttcg cccttgcgtt gcgcccggcg ttcttcttgc gatctgcctg
     1501 catagttggt gtccgtctgc ttgtccgtca tgtcgcgctc cttgagtgag tgacatgcaa
     1561 agcggcgcaa gagccgttcc atccgcgatg actgcccgat gcacgggtat tcgcgatacc
     1621 ggataaacgc ccaactggtt gtcgtgcgtg ggcttatatg gagtggcccg acgctcaatc
     1681 accgggctca tccatgaaac gtttctacat tagtgaattt acgtgcgggt gatggacgcg
     1741 ccgccgtcca cgagcgacgc cgtgccggtg acgaacgagg agtcatcgga ggccagataa
     1801 agcacggagc gcgcgagttc ttccggtgtt gcaacgcgct ttaacgcgtg caggttggtg
     1861 atgaaggttt gcgattcagc ggtgtcgttc atgtcacggt acatcggggt atcgacggcg
     1921 ccgggcagca cggcgttcac gcggatacct tgcgcgccgt actcggccgc cagcgcttgc
     1981 gtgagtccga tcaggccggc cttgctcgcc gcatacgaag ccgtgccggg gaatgcaaac
     2041 gaataaccca cgaaggtcga tgtgaagatg atcgacccgc cgccgtgtcc gagcatggcg
     2101 ggaatctggt gtttcgcgcc gaggaatgcg ctggtcaggt tgatcgcgag cgcgttgttg
     2161 aacccttcca ccgagacgga cgtggtcggt cccatttcgc ct
//
LOCUS       DATGBK010001375         1767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_154910, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001375 DATGBK010000000
VERSION     DATGBK010001375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154910"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..166
                     /locus_tag="VKJ77_19220"
     CDS             <1..166
                     /locus_tag="VKJ77_19220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HMC47456.1"
                     /translation="EFAIDPTGRWLIVGNQDSDSVYFFRRNPDTGELASDPKRLEVGS
                     PVDFKFVSPS"
     gene            326..1387
                     /locus_tag="VKJ77_19225"
     CDS             326..1387
                     /locus_tag="VKJ77_19225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HMC47457.1"
                     /translation="MNITSAVSRESGLTAGNTPHDAPTPPGFICAFRFAGAEALRLSW
                     DEARREIAGEGPTWLHLSANDDTVESWLTGVTAMPDVAREFLNGEDKRPRVHMGGTFM
                     YGVVADLERVAETPDADPNAQATRRATGALRFYVDRNRMITVRAQPLQSTDRLRHAVL
                     EGAIFRDTVDLFAGLIRALNETFADRIDEIGDRLDDVEEGVLDGRHSNWRAELGSVRR
                     RLVEVKRFVDPERNALTQLVMRRLEWAEPRSMETLIQAIQVLNGLAAGLEAQYERAKL
                     LQEEIAALLSEDINRKLLWLAIMSALLMPATLVSGIFGMNVAGLPGTHNNYAFLIVMS
                     VMGVCAVFTLYLLRRLRLW"
     gene            complement(1456..>1767)
                     /locus_tag="VKJ77_19230"
     CDS             complement(1456..>1767)
                     /locus_tag="VKJ77_19230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HMC47458.1"
                     /translation="VVEYLKQFGEPEYEEGILSGPTPEGGTPDLFGDTPDAEADPLYD
                     EAVSFVLRTRRASISSVQRQLRIGYNRAARLVEQMETAGLVSPMGTNGNREVLAPGPS
                     E"
BASE COUNT          310 a          508 c          571 g          378 t
ORIGIN      
        1 cgaatttgcg atcgatccga ccgggcgctg gctgatcgtc ggcaatcagg acagcgacag
       61 cgtctacttt ttccggcgca atccggacac gggtgaactt gcgtccgatc cgaagcgcct
      121 ggaggtcggc tcaccggtcg atttcaagtt cgtttcgcca tcctgaagat tattttttca
      181 agtgtgcggg tcgcgggtcg tcagtgattc gcggctcaca cagttttctc gggttctcaa
      241 gtaacgtggt tttgatttaa ccagtaaggc cgggttgtcc cgcgagtcgt cccgcgggtt
      301 gtcccagtat ggaaggaatt taaagttgaa cattacgtca gcagtaagca gggagtccgg
      361 tctcaccgcc ggaaatacgc cgcacgacgc gcccacgccg ccgggtttca tctgtgcgtt
      421 ccgctttgca ggcgcggagg ctttgcggct gtcctgggat gaagcgcggc gcgagatagc
      481 gggcgaaggc cccacgtggc tgcatttgag cgcaaacgac gacaccgtcg aaagctggct
      541 gaccggcgtc accgcaatgc ccgatgtcgc ccgcgaattc ctgaacggtg aggacaagcg
      601 cccgcgcgtg cacatgggcg gcacgttcat gtacggcgtc gtggcggatc tggagcgcgt
      661 cgcggaaacg cccgacgccg atccgaacgc gcaggccacg cgccgggcga cgggtgcgct
      721 gcgcttttac gtcgatagga accgcatgat cacggttcgc gcgcagccgc tgcaatcgac
      781 cgaccggttg cgtcatgccg tgcttgaggg cgctattttc cgcgataccg tcgatctttt
      841 cgccggcctg attcgcgcgt tgaacgagac gtttgcggat cgtattgatg aaattggcga
      901 ccggctcgac gacgtggagg agggcgtgct cgacggccgt cattcaaact ggcgcgcgga
      961 gttggggtcg gtgcgcaggc ggctggtgga ggtgaagcgg ttcgtggatc ctgagcgcaa
     1021 cgcgctcacg caactggtca tgcgacggct ggagtgggca gagccccggt cgatggaaac
     1081 gttgatccag gctattcaag tgctcaacgg actggcggcc gggcttgagg cgcaatacga
     1141 acgggcgaag ctgctgcagg aagagatcgc tgcgttgctc tcggaggaca tcaaccgcaa
     1201 gcttctgtgg ctcgcgatca tgtccgcgtt gctgatgccc gcaacgcttg tgtccggtat
     1261 cttcggcatg aacgtggccg ggttgcccgg cacgcacaac aattatgcgt tcttgatcgt
     1321 gatgagcgtg atgggcgttt gcgctgtctt cacgctgtat ttgttgcggc gcttgcggtt
     1381 gtggtgaatt gatgaagccg atgcccaggc tatggtttcg caacttcgcc tgggcaccgg
     1441 tcatctgata atggcttatt ccgacggtcc cggtgcgagc acttcgcggt tcccatttgt
     1501 gcccatcggt gaaacaaggc ccgctgtttc catctgttcg accagccgcg ccgcgcggtt
     1561 atagccaatg cgcaattgcc gctgcactga tgaaatcgat gcccggcgcg tgcgcaatac
     1621 gaacgacacg gcttcgtcat agagcgggtc ggcttcggca tccggcgtat cgccgaacag
     1681 gtccggcgtg ccgccttcgg gcgtcggtcc cgacaagatc ccttcctcgt actccggttc
     1741 gccgaactgc ttcagatact ccacgac
//
LOCUS       DATGBK010001376         1897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_131676, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001376 DATGBK010000000
VERSION     DATGBK010001376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131676"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..109)
                     /locus_tag="VKJ77_19235"
     CDS             complement(<1..109)
                     /locus_tag="VKJ77_19235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HMC47459.1"
                     /translation="MAMTTEFALTAPSRAEIDALAGPTVIEFGTSWCGYC"
     gene            complement(373..903)
                     /locus_tag="VKJ77_19240"
     CDS             complement(373..903)
                     /locus_tag="VKJ77_19240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HMC47460.1"
                     /translation="MNHDLVSLAAIFSQLSLLAFGGGNTILPEMQRQVVDIHQWMSKA
                     DFSALFALAQAAPGPNMMIVTLIGWHVAGWPGVLVTSIAKFGPSSIVTVVAMHAWERF
                     KNHPWRRYVQLGLVPMTAGLVAASASLIAEASDTRWILTAITAVIAFLSFKTKLHPLW
                     LLALGSLIGLTGFGQF"
     gene            complement(900..1508)
                     /locus_tag="VKJ77_19245"
     CDS             complement(900..1508)
                     /locus_tag="VKJ77_19245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HMC47461.1"
                     /translation="MHDHALQEPFAPPNVAEIFIGFLTLGLTAFGGALPLARREIVER
                     RKWLTSDEFVDLLGLCQFLPGGNVINLSVAVGMKFRGVAGALAGLLGLIVGPSLIVIG
                     LGVLYQRTHQDPHIRHLFAGLAAAAAGLLVSMAIKVAWPLRHKLSMAAVAAAAFIAIA
                     LLRLPLLPVMLVLTPVSIFVASRVSREVKPEVKPEVKRGESQ"
     gene            complement(1673..>1897)
                     /locus_tag="VKJ77_19250"
     CDS             complement(1673..>1897)
                     /locus_tag="VKJ77_19250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008114455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketopantoate reductase C-terminal
                     domain-containing protein"
                     /protein_id="HMC47462.1"
                     /translation="RARAMFTEAGSTITASMLRDLENGARIEADHVVGDLIARAKGAQ
                     GAISTPVFSTGYTHLKAYESRRERGDVKAS"
BASE COUNT          397 a          621 c          537 g          342 t
ORIGIN      
        1 ggcaatagcc gcaccaggag gtgccgaatt cgatcaccgt cggcccggcg agcgcgtcga
       61 tctcagcgcg cgatggcgcg gtaagtgcga attcagtggt catcgccatc agttctttct
      121 cctcgaaacg aaactccagc cattctattg ggcaaccacc tgacgcgctc gacccggctc
      181 ttttgcccga tcacagcgag gcggcaaagt gcttgctgtc ttctccacac tgccatttgt
      241 gcactgcaaa ttcactttcc gcgatgttcc tgacatagcc gagcctggcg acgccgcgta
      301 acccacgccc ccttgtcccc aagaccaatc ccgcaacgaa ctcggccttt tgccttcaat
      361 gcgaacaccg ttctaaaact gcccgaagcc ggtcagcccg atcaggctcc ccaaggccag
      421 caaccacagt ggatgcagct ttgtcttgaa cgacaggaac gcaatgaccg ccgtgatggc
      481 cgtgagtatc cagcgggtgt ccgacgcttc ggcaatcaac gacgcactcg ccgcgaccag
      541 gccggctgtc atcggtacga ggccgagttg aacgtatcgc cgccatggat gattcttgaa
      601 gcgttcccag gcgtgcatgg ccacgaccgt cacgattgac gacgggccga actttgcaat
      661 cgatgtcacc agcacgcccg gccagccggc cacatgccag ccgatcagcg tcacgatcat
      721 catgttcggt ccgggcgccg cctgtgcgag cgcgaacagc gcggaaaaat ccgccttcga
      781 catccactga tggatgtcca ctacctgccg ctgcatctcg ggcaggatgg tattgccgcc
      841 gccgaaagcg agcagtgaaa gctggctgaa aatggccgca agcgaaacga gatcgtggtt
      901 cattggctct ccccgcgctt cacttccggc ttcacttccg gctttacttc gcgactcacc
      961 ctcgatgcga cgaaaatcga aaccggtgtg agcacaagca tcaccggcaa caacggcaag
     1021 cgcagcaacg cgatcgcgat gaacgctgcg gctgcgaccg ccgccatgga tagtttgtgc
     1081 cgcagcggcc acgctacctt gatcgccatc gacaccagca ggcccgcggc cgccgcagca
     1141 agtcccgcga acaaatggcg gatgtgcggg tcttgatgcg tgcgttgata cagcacgccg
     1201 agtccgatca cgatcagcga aggcccgacg atcagcccga gcaggcccgc cagtgcgccc
     1261 gccacgccac gaaatttcat gccgaccgca accgagaggt tgatcacgtt gccgcccggc
     1321 aaaaactggc aaaggcccag cagatcgacg aattcgtcgg aggtgagcca cttgcgccgc
     1381 tcgacgattt cgcgccgtgc aagcggcagc gcgccgccga acgcggtcag cccgagcgtc
     1441 aggaagccga taaaaatttc cgcgacattc ggcggggcga acggctcttg caaggcatga
     1501 tcgtgcatgg ttcggccagc gttacttttg agaagcgcaa agcgtaacgc tttatgcccg
     1561 ttgcttcaaa gtacgaaatg gctgtttaaa gcgcgatgcg gattttcggg cagcgagatg
     1621 caatgccgct acaaccaccg gcatccaccc cgctctcatc gctcggttcg gcttacgaag
     1681 ccttgacgtc gccacgttcg cggcgagatt cgtaagcttt caaatgggtg taacccgtcg
     1741 agaaaaccgg cgtgctgatc gcgccttgcg cccctttggc ccgggcaatc agatcgccta
     1801 cgacgtggtc cgcttcgatc cgcgcgccgt tctccagatc gcgcagcatg gaggcggtga
     1861 tggtggaacc ggcctccgtg aacatcgccc gagcacg
//
LOCUS       DATGBK010001377         2049 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_108843, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001377 DATGBK010000000
VERSION     DATGBK010001377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108843"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1083)
                     /locus_tag="VKJ77_19255"
     CDS             complement(<1..1083)
                     /locus_tag="VKJ77_19255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HMC47463.1"
                     /translation="MAKATYSASAQALPHRMSRLFTEIRWILQVALGVFLLMALVSYS
                     RHDPSWTHAAQVDQIANWAGRVGAWTADILLLLFGLSAYWWVVLLVRRIIANYRRITN
                     HEAADEAPAKDRTWLAEAFAFVLVLASSDGIEALRMWSLKVQMPRQYASGGVVGEAIA
                     HGVSHALGFTGATLFLLIALAIGLSLYFNFSWLSVCEKTGDGIMATITGARMRREAGR
                     DRKLGEVAAVKREGKVVRGRVKIEEQEPVMIVPPVAPAKSARVEKEKQVPLFTDLPGD
                     STLPPLALLDAAPEVKETISADTLEYTSRLIEKKLKDFGVEVAVVAAYPGPVVTRYEI
                     EPATGVKGSQIVGLAKDLARSLSLVSI"
     gene            1473..>2049
                     /locus_tag="VKJ77_19260"
     CDS             1473..>2049
                     /locus_tag="VKJ77_19260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC47464.1"
                     /translation="MSSPKHAKVLILGSGPAGYTAAVYAARANLSPLLITGLAQGGQL
                     MTTTDVENWPGDAMGVQGPELMQRLLDHAERFNTEVVFDHIHTAKLTERPIRLIGDSG
                     EYTCDSLIIATGASAQYLGVPSEEAFMGKGVSACATCDGFFYKNGEVAVIGGGNTAVE
                     EALYLAGIAKKVTVVHRRDKFRAEPILIDRLL"
BASE COUNT          421 a          669 c          581 g          378 t
ORIGIN      
        1 aattgaaacg agcgacagcg aacgcgccag atccttcgcc agcccgacga tctgtgagcc
       61 cttcacaccc gttgccggct cgatctcgta gcgcgtcacg acaggacccg ggtatgcggc
      121 caccacggcc acttccacac cgaaatcctt cagctttttc tcgatcagcc gcgacgtgta
      181 ttcgagggta tcggcggaaa tggtttcctt cacttccggc gcggcatcga gcaaggccag
      241 cggcggcaag gtggagtcgc cgggcagatc ggtgaaaagc ggcacctgct tttccttttc
      301 cacacgcgcc gatttggccg gcgcgaccgg cggcacgatc atcaccggct cctgctcttc
      361 gatcttcacg cgcccgcgca ccaccttgcc ttcgcgcttc acagccgcaa cctcacccag
      421 cttgcgatcg cggcccgcct cgcggcgcat cctcgcgccg gtgatggtcg ccatgatgcc
      481 gtcgccggtt ttttcgcaaa cggacagcca ggagaagttg aaatacagcg acaaaccgat
      541 cgccagcgcg atcagcagga acaacgtagc gccagtgaaa cccaatgcgt gcgaaacccc
      601 atgcgcaatc gcttcgccga ccacgccgcc cgatgcatat tgacgcggca tctgcacctt
      661 gagcgaccac atccgcaacg cttcaatccc gtcgctggaa gccagcacca gcacgaacgc
      721 gaacgcctcg gccagccagg tgcgatcttt cgctggcgct tcgtcagccg cttcgtgatt
      781 cgtaatccgc cgataattcg cgatgatccg ccgcaccagc agcacgaccc accaataggc
      841 cgacagcccg aacaaaagca gcaggatatc tgctgtccac gcacccacgc gacccgccca
      901 gttggcgatc tggtcgactt gggcggcgtg ggtccagctt ggatcgtggc ggctgtagct
      961 caccagcgcc atgagcagga acacgccgag cgcgacctgc aggatccatc gaatctcggt
     1021 gaaaaggcgc gacatgcggt gcggcaatgc ctgcgcgctt gcagaatagg tagcttttgc
     1081 cattgatccg taaggctttc tgacccgctg cacggggcgc gtcgggtcaa caggtttaat
     1141 gacgcattgt aaacgctgcg ttgcgatgat cgagcaaaaa tggtctgtag tttcaccctg
     1201 taacacccgt gttacacgct acaagccctg gaacgtgcta tggccgcgat tgaaaggatc
     1261 actcggcgag cgttctttac gccctttata atggcgaatt cgcacctaac tacaggtcac
     1321 cggcagcagt gcgtggcatg cggttcgccg ccacgagcga ctttccaccg tccgcgccct
     1381 caagccgata tgaaccgtca aacggaatca acgcggaaca tcgcggatca ccgggaccaa
     1441 cggttcggcc ctaaccacaa cggattgctc tcatgtcttc gcccaaacac gcaaaagtgc
     1501 tgattctcgg ttccggcccc gccggctaca ccgccgctgt ctacgcggcg cgtgccaacc
     1561 tgtcgccgtt gcttatcacg ggcctggcgc agggcggtca actcatgacc accacggacg
     1621 tcgaaaactg gcccggcgac gcaatgggcg tgcaaggccc ggagctgatg cagcgtttgc
     1681 tggatcacgc ggagcgcttc aacactgaag ttgtcttcga tcacatccat accgccaagc
     1741 tgaccgaacg gcctatccgc ctgatcggcg actcgggcga gtacacctgc gactcgctga
     1801 tcattgcgac aggggcatcg gcgcaatatc ttggcgtgcc ttcggaagaa gcgttcatgg
     1861 gcaaaggcgt gtccgcttgc gcaacctgcg acggtttctt ctacaagaac ggcgaagtgg
     1921 cagtgatcgg cggcggcaac acggctgtgg aagaggcgct gtacctggcg ggtatcgcca
     1981 agaaggtgac cgtggttcat cggcgcgaca agttccgcgc tgagccaatc ctgatcgatc
     2041 gcttgctcg
//
LOCUS       DATGBK010001378         1624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_340118, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001378 DATGBK010000000
VERSION     DATGBK010001378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340118"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..>1624
                     /locus_tag="VKJ77_19265"
     CDS             106..>1624
                     /locus_tag="VKJ77_19265"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HMC47465.1"
                     /translation="MAWSGHGESVFRNIPESAIATGAAFSQLIEPSHAIRTDAVMAST
                     ATDLGEGVPYCIEYGVRAETSAAVIWIEESGRWFADANGRPTRVQGVVRVNNERHAHE
                     EQLLRLAQHDPLTGELNRSHLVASLAETFEDAKRFRSTFAFMVVGIDHLTRVNDAFGF
                     DVADEVIREVAQRIRARLRSGDVLGRFSGNKFGLILKDCSVEDLHVVAERFLAGVRDE
                     VVPTKSGPVAVTVSIGAVSVPRYARNVDEAMNRAQEAFELTKNRRLGSFSIWQPNVER
                     ETQRRLNIRVTDEIVTALNERRITMAFEPVVATNDRDHAVFYEALVRMKQNDGRVLLA
                     PDIVPVAEKLGLIRLVDHRVLELVIAELAIAPDVQLSLNISPGTTMDPDWWASIDSLL
                     RANPGAAERLIVEITETVAIQDLDDVRGFVTRLKNFGCRIAIDDFGAGYTSFRNLRKL
                     GVDIVKIDGAFVQNIVRSADDRAFVQTLIDLARRLEIKTVAEWVQDDESAALLRDW"
BASE COUNT          297 a          498 c          520 g          309 t
ORIGIN      
        1 tacggcgaca gcgtgaacgt gcctcaatcg atcgatcttc gtgcctcggc aatcctggcg
       61 tcgctcgatc aggcggcgtt cgtctgggat ctggcgaccg atgccatggc gtggagcggc
      121 catggtgaat cggtatttcg caacattccc gaaagcgcga tcgcaaccgg cgccgctttt
      181 tcgcaactga tcgagccgtc gcacgcgata cgtaccgatg ccgtgatggc ctcgaccgcg
      241 accgatctcg gcgagggggt gccgtattgc atcgaatacg gcgtccgcgc ggagacgtcc
      301 gcagcggtga tctggatcga ggaatccggg cgctggttcg ccgacgccaa cggcaggccg
      361 actcgggttc agggggtcgt ccgggtcaac aacgaacgcc acgcgcacga agagcagctt
      421 ctccggctgg cgcagcacga cccgttgacc ggcgagctca atcgcagcca tctggtagcg
      481 tcgctggccg agacgttcga agacgctaag cgtttccgct cgacttttgc cttcatggtg
      541 gtcggcatcg atcacctgac gcgggtcaac gatgccttcg ggttcgatgt cgccgatgaa
      601 gtcatccggg aagtcgccca gcgcatccgc gcgcggttgc gcagcggcga tgtgctcggg
      661 cgtttctccg gcaacaagtt cggcctgatc ctgaaggatt gcagcgtcga ggacctacat
      721 gtcgttgccg agcggtttct tgccggcgta cgcgacgagg tggtaccgac caaatcggga
      781 ccggtggccg ttacagtatc gatcggcgcc gtcagcgtcc cgcgatatgc gcgaaatgtc
      841 gacgaggcca tgaaccgagc gcaggaagcc ttcgaactga ccaagaaccg ccgtctcggc
      901 tcgttctcga tctggcagcc gaacgtcgag cgcgaaacgc agcgtcgtct caatatccgc
      961 gtgaccgacg agatcgtgac cgcgctcaac gagcggcgga tcacgatggc attcgagccg
     1021 gtcgtcgcaa ccaacgatcg ggaccatgct gtgttctacg aggcgctggt ccgcatgaag
     1081 cagaacgacg gccgcgttct gctcgcgccc gatatcgtgc cggtcgccga gaaactcggc
     1141 ctgatcaggc tggtcgatca tcgcgtgctc gaactggtga tcgcagaact cgccattgct
     1201 ccggatgtgc agctcagcct caatatctct cccggcacca cgatggatcc ggattggtgg
     1261 gccagcatcg attcgttgct gcgtgcgaat cccggcgcgg cggagcggtt gatcgtcgag
     1321 atcaccgaaa ccgtcgcgat tcaggatctg gacgacgtcc gcggcttcgt cacgcgcttg
     1381 aagaactttg gctgccgtat cgccatcgat gatttcggtg cgggatacac ctcgttccgt
     1441 aacctgcgta aactgggggt cgatatcgtc aagatcgacg gcgcgttcgt gcagaacatc
     1501 gtccgctcgg ccgatgaccg cgccttcgtg cagacgctga tcgacctggc gcgccggctg
     1561 gaaatcaaga ccgtcgcgga atgggttcag gatgacgaat ccgccgcact gctgcgcgac
     1621 tggg
//
LOCUS       DATGBK010001379         3446 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_201709, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001379 DATGBK010000000
VERSION     DATGBK010001379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3446
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201709"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..532
                     /locus_tag="VKJ77_19270"
     CDS             41..532
                     /locus_tag="VKJ77_19270"
                     /inference="COORDINATES: protein motif:HMM:NF022834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HMC47466.1"
                     /translation="MEREVRSSLQLLPGWPPGGRNPRLNLGDAKAELESGVSELIGYG
                     AGLTPDGDDYLLGYLASLWPWQRLGAISAHLKLLRPAIKSQLHRTTTISRHYLELALQ
                     GHYSQSIDHLTTVLIHGSTPADVKRSAIDVMKFGSSSGADCLGGFLHGIRALGKMEQK
                     EMN"
     gene            670..2226
                     /gene="fdrA"
                     /locus_tag="VKJ77_19275"
     CDS             670..2226
                     /gene="fdrA"
                     /locus_tag="VKJ77_19275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
                     /protein_id="HMC47467.1"
                     /translation="MSIRTKVFKNMYQDSVSLMQISAHISKLAGIEQASVVMGTSTNL
                     AQLRDAALDDGCTAGPNDLVIAVRGEIAACDGALVIAEERLNSKPEESSGDGVRPPPL
                     ASLEMAVEQQAASNLALISVPGDYAAAEAIKALRLGMSVMLFSDNVSLAHERAIKTLA
                     AEKNLLVMGPDCGTAIINGLPLGFANVVRRGAIGVVAASGTGLQEVTCRIDQLGAGIS
                     QALGTGGHDLHESIGGISMLYGLDALSADPDTQVIVLISKPPAPAVAEKILARARAAG
                     KPVVVNFLGARAEDMNVPGITPAYTLADAAGFAVALLSGAGLPPSVAEVSTPDAGRLH
                     DYSRTLRPMRRFIRGVFAGGTFCYESQLLLRQRGFAASSNTPVASNSKLEDIWHSTGH
                     TLVDMGDDDFTRGRPHPMIDPTLRNQRILAELNDPQTAVVLFDLVLGYGASTEPAREL
                     LELIEHARLQAAGKDLPVLISHVCGTEADPQVRSRQVDTLREAGVLVAGCNAQAALWA
                     SHVAHLQAQK"
     gene            2237..>3446
                     /locus_tag="VKJ77_19280"
     CDS             2237..>3446
                     /locus_tag="VKJ77_19280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HMC47468.1"
                     /translation="MNTLFNQPLNVVNAGLSSFADNLALAGGDVIDLRWQPPALGDVD
                     AGLALASLIRHPLVEHANGQAFQQYLAAQPVLVDVMSASHAISAMAHRKLILHAGPPI
                     EWTDMCGPVKGAIVGAILFEGWATTHEAAERLAADGAIDFEPCHHYQAVGPMAGIISP
                     SMPLWVIENKTNGRRAFSNFNEGLGKVLRFGANNHEVLERLHWMTQELAPALKAALKV
                     LGEVELKPLMAQALHMGDEVHNRNAAATGLLIKRLIPALLSTGLPIERIQRVTEFIVG
                     NDHFFLNLSMAACKSMMDAAHNVPFSSMITVMARNGVNFGIRMSGTGDRWFQAPANPV
                     EGLFFPGYGVEDAAADLGDSAITETAGVGGFAMASSPAIVKFVGGTPADATSNSRRMQ
                     AITLGGNPAFT"
BASE COUNT          670 a         1031 c         1101 g          644 t
ORIGIN      
        1 ggcttatccg ttgctggcga cccagttgtt ggagtactgc atggagcgcg aggtgcgcag
       61 cagcctgcaa ttgttgccgg gctggccgcc gggtgggcgc aaccctcgct tgaacttagg
      121 cgatgcaaag gcggagttgg aaagcggtgt ctcggaactg attgggtacg gcgcagggct
      181 gacgccggac ggcgacgact acctgctggg ttatctggcg tcgttatggc cgtggcaacg
      241 tctcggcgcc atatccgccc atttgaaact attgcgcccg gcaataaaga gtcagcttca
      301 ccgcacaacc actatcagtc ggcattatct ggagcttgcg ttgcagggac actattcaca
      361 gtcgatcgat catttgacga cagtcctgat tcacggaagc acgccggcgg acgtgaaacg
      421 ttcggcaatc gatgtcatga aattcggttc gtcatctggc gcagattgtc tcggaggttt
      481 tctgcacgga ataagagcgc ttggaaagat ggagcagaaa gaaatgaact gatcctttat
      541 acggattagc tgaaaacaat tatcgagtta atcagattga tggcacccgg cgcgaccaac
      601 gccgggttcg ccaggcgggc actcggccga atctggatca ggcaagtgta acgattaccg
      661 gaagctgaaa tgagcataag aaccaaggtc ttcaagaaca tgtatcagga ctccgtctcc
      721 ttgatgcaga tatccgcgca catctccaag ctcgccggca tcgagcaggc ctcggtggtg
      781 atgggaacga gcaccaatct cgcgcaactg cgggatgcgg cgctggacga cggctgcaca
      841 gccggtccga acgatctcgt gatcgcggta cgtggcgaga tcgccgcgtg cgacggcgcg
      901 ctcgttattg cggaagagcg tttgaatagc aagccggagg agtcaagcgg cgacggggtg
      961 cgtccgcctc cgcttgccag cctcgagatg gcggtggaac agcaggcggc atcgaatctc
     1021 gccctgatct cggtccccgg cgattacgcc gccgccgagg cgatcaaggc gcttcgcctc
     1081 ggcatgtcgg tcatgctttt cagcgataac gtcagcctcg cccacgagcg cgccatcaag
     1141 acactcgcgg ctgagaagaa cctgctggtg atgggacccg attgcgggac ggccatcatc
     1201 aatgggttgc cgttggggtt cgccaatgtg gtgaggcgcg gggcgattgg cgtagtggcg
     1261 gcatcgggca ccggcttgca ggaagtgaca tgccgcatcg accagttggg cgccgggatt
     1321 tcgcaggcgc tcggcacggg cgggcatgac ctgcacgaat cgatcggcgg gatctccatg
     1381 ttgtacggtc tcgatgcgct gagcgccgat cccgacactc aagtgatcgt gctgatctcc
     1441 aaaccgcccg ctccggcagt cgcggagaaa atcctggcgc gggcgcgcgc agcgggcaag
     1501 cccgtggttg tcaacttcct gggcgcacgg gccgaagaca tgaacgtgcc ggggatcact
     1561 ccggcgtaca ccttggcaga tgccgccggc ttcgccgtcg cgttgttatc gggcgctggg
     1621 ctaccgcctt cagttgccga ggtcagtacg ccggacgccg gccgtctcca cgattacagc
     1681 cgtaccttgc ggcccatgcg gcgcttcatc cgcggtgtgt tcgcgggtgg caccttttgc
     1741 tacgagagcc aactgttatt gcggcaacgc ggcttcgccg cgtcgtcgaa tacgccggtt
     1801 gcgtccaaca gcaagctcga ggatatctgg cacagcaccg gtcacacact cgtcgacatg
     1861 ggcgatgacg atttcacgcg cggccgtccg catcccatga tcgatcccac gctgcgcaac
     1921 cagcgaatac tcgcggaact gaacgacccg caaaccgctg tcgtgctgtt cgacctcgtg
     1981 ctgggttatg gcgcatcgac ggaacctgcc cgcgagttgt tagagctgat cgaacacgcg
     2041 cggctgcaag cggccggcaa agacttgccg gtcctgatct cccacgtctg cggcacggaa
     2101 gccgatccac aagtcagaag ccgtcaggtc gataccttgc gcgaagccgg cgtactcgtc
     2161 gccggttgca acgcgcaggc ggcgctctgg gcgagccacg ttgcccatct tcaggcgcaa
     2221 aaataacggg accatgatga acacgctatt taaccagcca ctgaacgtgg tgaacgcggg
     2281 cttgagcagt tttgccgata acctggctct ggccggcggt gacgtcatcg atctacgctg
     2341 gcagccaccc gcgctcggcg atgtagacgc gggactggcg ctggcatcgc tgattcgcca
     2401 tccgctggtc gagcacgcca acggccaggc gttccagcag tatctcgcgg cccagcccgt
     2461 gctcgtcgat gtcatgagcg catcgcacgc aatcagcgca atggcgcatc gcaagctgat
     2521 cctgcacgcg ggtccgccca tcgaatggac cgatatgtgc gggccggtga agggtgcgat
     2581 tgtcggcgcg atcctgttcg aaggatgggc gacgacccac gaagccgccg agcggctggc
     2641 ggcggacggc gcgattgact tcgagccgtg tcaccactat caggcggttg gccccatggc
     2701 gggcatcatc agcccgtcca tgccgttgtg ggtgatcgag aacaagacaa acggccggcg
     2761 ggctttcagc aacttcaacg aaggactcgg caaggtgctg cgtttcggcg ccaataacca
     2821 cgaagtgctg gagcgcctgc actggatgac gcaagaactc gcgccggcgt taaaggctgc
     2881 attgaaggtg ctgggcgaag tggagttgaa gccgctgatg gcacaggcgc tgcacatggg
     2941 cgacgaagtc cataaccgca acgcggctgc caccggcctc ttgatcaagc gcctgattcc
     3001 cgcgttgcta tcgaccggat tgccgatcga gcggattcag cgcgtgacgg aattcattgt
     3061 cggcaacgac catttcttcc tcaatctatc gatggccgct tgcaaatcca tgatggatgc
     3121 ggcccacaac gtgcccttca gttcaatgat cacggtcatg gcgcgcaacg gcgtgaactt
     3181 cggcatccgc atgtccggca cgggcgaccg ctggttccag gcgcccgcga atccggtgga
     3241 aggtttgttc tttccgggtt atggcgtgga agatgccgcc gcggaccttg gcgacagcgc
     3301 gatcaccgag acagccggcg tgggcggttt cgccatggcg tcgtcgccgg ctatcgtcaa
     3361 gttcgtgggc ggcacgccgg cggacgccac cagcaacagc cgtcgcatgc aggccatcac
     3421 gctgggcggc aatcccgcgt tcacgc
//
LOCUS       DATGBK010001380         1627 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_224844, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001380 DATGBK010000000
VERSION     DATGBK010001380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224844"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..534
                     /locus_tag="VKJ77_19285"
     CDS             <1..534
                     /locus_tag="VKJ77_19285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC47469.1"
                     /translation="QICERHGWHKPINMQLQLNLAYREEEREMIPYCADQGLGVSVFS
                     PLARGLLTCDPASTRNQTDFFTSQMYGDTASREIAASVARVAKRRGVSAAQVAQAWVL
                     QRDGVASMLVGADSPAQFDSALSALGTHLDGDELYELERNYTPCDVINDYTAGSRTAR
                     ESRSPQGDFVQPMKDAA"
     gene            531..>1627
                     /locus_tag="VKJ77_19290"
     CDS             531..>1627
                     /locus_tag="VKJ77_19290"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HMC47470.1"
                     /translation="MNLLRKEHYINGAWHQSAETYAVRNPATGEVIADVAKAGAAETH
                     QAIRAAEIAFPVWRSLTAKERGARVRRWGELMLEHSDALAELLTREQGKPLAEANGEV
                     AYAASFLEWFAEEAKRSYGDVIPSSKPGSKIIVTREPVGVVAAITPWNFPLAMITRKA
                     GPALAAGCTMVLKPSEETPLSALALAVLAAQAGIPAGVFNVVSGDAVAIGATLTASPV
                     VRKLSFTGSTRVGKLLAAQAADTLKKLSLELGGNAPFIVFDDADLNAAVQGAMASKFR
                     NTGQTCVCVNRFFVQAGVYAEFTQRLTEAVRKLRVGDALEREVDQGPLINEAAFSKVG
                     DHVADALSKGATVLTGGRAHPLGGTFYEPTVL"
BASE COUNT          316 a          487 c          537 g          287 t
ORIGIN      
        1 cagatctgcg agcgacatgg ctggcacaag cccatcaata tgcagttgca gttgaatctt
       61 gcgtaccgcg aggaagagcg cgaaatgatc ccgtattgcg ctgaccaggg gctgggcgtg
      121 tccgtcttca gcccgctcgc gcgcggtctg ctgacgtgcg acccggcgtc cacacgtaac
      181 cagaccgact tcttcacgtc gcaaatgtac ggcgacacgg cgtcgcggga gattgcggca
      241 tcggtggcgc gcgtggcgaa gcggcgtggc gtgagcgcgg cgcaggtcgc gcaggcctgg
      301 gtgctccagc gcgatggcgt cgccagcatg ctggtcggtg cggattcacc tgcccagttc
      361 gatagcgcgc tcagcgcgct cggcactcac ctagacgggg acgaactgta cgaactcgag
      421 cgcaactaca cgccgtgcga tgtcatcaat gactacacgg ccgggagtcg taccgcacgc
      481 gaatctcgct caccgcaagg tgactttgtt caaccgatga aggacgccgc atgaatctgc
      541 ttcgcaaaga gcattacatc aatggcgcct ggcaccaaag cgccgagact tacgctgtcc
      601 gcaatccggc tacgggcgaa gtgatcgcag atgtcgcgaa ggccggcgca gcggaaacgc
      661 accaggccat ccgcgctgcg gagatcgcgt ttcccgtttg gcgctcactc accgcgaaag
      721 agcgtggggc gcgggtcagg cgctggggcg aattgatgct tgagcatagt gatgcgctcg
      781 ctgaactgtt gacgcgtgag caaggcaagc cgctcgcgga agcaaatggc gaagtggcct
      841 atgccgcaag cttcctcgag tggtttgccg aagaagcgaa acgtagctat ggcgatgtga
      901 tcccgagttc aaagcccggc tcgaagatca tcgtgacgcg cgagccggtc ggcgtggtcg
      961 ccgccatcac gccctggaac ttcccgctgg ccatgatcac gcgcaaagcc ggccctgcgt
     1021 tggcggctgg ttgcacgatg gtgctgaagc cgtccgagga aacgccgttg agcgcgctgg
     1081 cactcgccgt gctcgcggcg caagccggca tcccggcggg cgtgttcaac gtcgtatccg
     1141 gagacgctgt tgctatcggc gcgacgttga ccgcatcacc cgtggtacgc aaattgtcgt
     1201 tcaccggatc aacgcgcgtg ggcaagctgc tcgccgcgca agccgcggac acgttgaaga
     1261 aactctcgct ggaacttggc ggtaacgcgc cgttcattgt gttcgacgac gctgatctca
     1321 acgctgcggt gcaaggcgcg atggcatcga agtttcgcaa caccggccag acctgcgtat
     1381 gcgtgaatcg atttttcgtg caggcggggg tgtatgccga attcacacaa cgcttgaccg
     1441 aggcagtacg caagcttcgc gtaggggatg cgctcgagcg ggaagtcgat caggggccgc
     1501 ttatcaacga ggccgcattc agtaaagtcg gcgatcacgt cgcggacgca ctgagcaagg
     1561 gagcgaccgt tctaaccggc gggcgtgccc atccgctggg cgggacgttc tacgaaccga
     1621 cggtgct
//
LOCUS       DATGBK010001381         2201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_340130, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001381 DATGBK010000000
VERSION     DATGBK010001381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340130"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1880)
                     /locus_tag="VKJ77_19295"
     CDS             complement(<1..1880)
                     /locus_tag="VKJ77_19295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase"
                     /protein_id="HMC47471.1"
                     /translation="MTIKPFSRRNASLRLAAFAAWPVFCALHLTASAAPVSPSAPAVA
                     TAAAPTGVAAAFAQLGNGRMVIRNVSLANLGMHDPVVLHAPDARQELYLPVPVDVPIS
                     NATFQFDGTYLHADGGRTTMLLSLDGAPVLARALTQQQGDAAATIGVDGTARPSGFVR
                     VGLGWSSVINDNVCADQTAIGNVLRIGPTSRLTYSFDPAAIKDLRTAWSALPQTPVVM
                     TSARGVTAPAFDAGWRAEAQLQREGKTPVTRAWPVAGDTVDLSAVTVPDALRAIPAFA
                     ALAAGGLHKLANPAEAGALVALAPHAGFAPDVIVADDRLRDSLKAELDALRTQVDAAA
                     GATNSSATAAAFDAWRTRSIGPIAEPLAAGEVRLAHLAGQVAIVVGDNDGVAVLARAW
                     RAIDVSDRLVVHQIDRTHNADVDAISLSALGGQPRTLNVLGRATWDANFDLAAVSGNG
                     KLPSAIVLDVSAMPTLNGAAQTAAIYINDVLIGAQLLNTNGKPQRITAHVPHYALAPG
                     NLLHVVFERQPEGGCQARSEGQPIAVLPTSNLQLDKADLDDNFTGMAARFATNATLIV
                     PSAYLGDTTLSLARVARLANAAGIVPSRTMLSVAPNGEAVAPKDPFLAADVALKGETS
                     HA"
BASE COUNT          405 a          690 c          750 g          356 t
ORIGIN      
        1 atcgcgtgcg acgtttcgcc tttcagcgcg acatcggcgg caaggaacgg atccttcggc
       61 gcaacggctt cgccgttcgg cgcaaccgac aacatcgtac gcgacggcac aatgccggcc
      121 gcattcgcca gccgggcgac gcgtgcgagc gacagggttg tgtcgccgag atacgcagac
      181 ggcacgatca acgtggcgtt ggttgcgaac cgcgcggcca tgccggtgaa attgtcgtcg
      241 agatctgcct tgtcgagttg caggttgctg gtcggtagca cagcaatggg ctggccttcc
      301 gagcgagcct ggcaaccgcc ttccggctgg cgttcaaaca ccacgtgcaa caggttgccc
      361 ggtgccagcg cgtagtgcgg cacgtgcgcg gtaatccgtt gcggcttgcc gttggtattg
      421 agcaactgcg cgccgatcag cacgtcgttg atatagatcg cagcagtttg cgcagcgcca
      481 ttgagcgtgg gcatagccga tacatcgagc acgatcgcgg acgggagttt gccgttgcct
      541 gacaccgcgg cgaggtcgaa attcgcatcc cacgtcgcgc ggccaagcac attgagcgtg
      601 cgcggctgac cgccgagcgc cgacaacgag atcgcatcga cgtccgcatt gtgcgtacga
      661 tcgatctgat gcacgaccag gcggtccgac acatcgattg cacgccaggc acgcgcgagc
      721 actgcgacgc cgtcgttatc gcccacgacg atcgcaacct gaccagccag atgcgcgagg
      781 cgcacttcgc cggccgcaag cggctcggcg atcgggccga tggaacgggt gcgccatgcg
      841 tcgaacgcgg cggcagtcgc ggatgagttt gtggcgcccg cggcggcatc gacttgcgtg
      901 cgcagcgcgt cgagttcggc tttgagcgag tcgcgcaaac ggtcgtcggc gacgatcaca
      961 tcgggcgcga agcccgcatg aggtgcgagc gccaccaatg cgcccgcttc cgccggattc
     1021 gcgagtttgt gcaagccgcc cgcagcaagc gcggcgaatg cgggaatggc ccggagcgcg
     1081 tccggcacag tgacggcgct caggtcgacg gtgtcacctg cgaccggcca tgcgcgcgta
     1141 accggcgtct tgccttcgcg ctgcagctgc gcttcggcgc gccagcctgc gtcgaacgcc
     1201 ggcgccgtta cgccgcgcgc gctggtcatc acgacgggcg tctgcggcag cgcgctccac
     1261 gcagtgcgca agtctttgat cgcggcggga tcgaagctgt atgtcaaacg agaagtcggt
     1321 ccgatacgca gcacattgcc aatcgcagtc tgatcggcac agacgttatc gttgatcact
     1381 gacgaccagc caagaccgac gcgaacgaag ccgctcggcc gcgccgtgcc atcaacgccg
     1441 atcgtcgccg ccgcgtcacc ttgttgctgt gtcagcgcgc gggcgaggac aggcgcgccg
     1501 tcgagcgaca gcagcatggt cgtacggccg ccatccgcgt gcagataggt accgtcgaac
     1561 tggaacgtcg cattggagat cggcacgtcg accggcacag gcagatagag ctcctggcga
     1621 gcgtccggcg cgtgcaggac gaccggatcg tgcatcccga ggttggccag cgacacgttg
     1681 cgtatcacca tgcgcccgtt gccgagttgc gcgaaagcag cggccacacc ggtgggcgcg
     1741 gccgcggtgg caacggcggg agcactcggg gatacgggcg cggcagaggc tgtcagatgc
     1801 agcgcacaaa agacgggcca cgctgcgaag gcggctaatc gaagggatgc attacggcga
     1861 gaaaacggtt tgatggtcaa gagtgttatc tcagaattag catgcagcgc gttcagaaca
     1921 tcgggcaatg cacggccggc agacgcagtg gccgcgtgct ggtttcacgc ggcattgcga
     1981 gggtgttatt gctaaaacgg cgtacagcac cggttgcgca ccgccgctta aagcgcggcg
     2041 acagccagcg caggttttac acgaattggt tcgaacggat cttgctggca gcgtggaacg
     2101 gcaggctctg cacgaccgct ccctgcgtga attcctcgaa gggccggccg gccagcgcag
     2161 cgacaatgcg ccccgatgca tggccgtcgc cgtacgggtt g
//
LOCUS       DATGBK010001382         1996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_271359, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001382 DATGBK010000000
VERSION     DATGBK010001382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271359"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..390)
                     /locus_tag="VKJ77_19300"
     CDS             complement(<1..390)
                     /locus_tag="VKJ77_19300"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004188073.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane; the beta chain is a
                     regulatory subunit; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HMC47472.1"
                     /translation="MRGAIVDVAFDNAALPLIEESLSIFTDRGPPIIAEVQAHLDERT
                     VRALALQSTNGLNRGTAVRASGGPILVPVGEAMLGRLIDVTGTPGDRGAPFADDVPRR
                     PIHRAPPPFASQSAATEIFWTGIKVIDL"
     gene            complement(892..1503)
                     /locus_tag="VKJ77_19305"
     CDS             complement(892..1503)
                     /locus_tag="VKJ77_19305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HMC47473.1"
                     /translation="MNFKTPNPASLGLAGFALTTWLLSMINAGWFTGDSMGMVLAVAF
                     AYGGTAQALAGLMEIPRGNTFGATAFLSYGAFWWSLALFVLFLHDKVPAAFIGWYLFL
                     WGVFTLYMWVATWRSARALQLVFFVLWITFFVLAASEWTGLVWLHHAGGYCGLVTAAL
                     AFYLSAAEIINETHGRSVLPVGTAGAAIVGSVSVDPAGNLQRS"
     gene            complement(1629..>1996)
                     /locus_tag="VKJ77_19310"
     CDS             complement(1629..>1996)
                     /locus_tag="VKJ77_19310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase"
                     /protein_id="HMC47474.1"
                     /translation="MGTMEIESALAACPLVAEAAVVGRPDETFGEAIVAFVVLKGPRP
                     TGADVKRTADELRAWVGKEIGPIAKPKEIRFGDAMPKTRSGKVVRRMLRSVAKGEAIA
                     QDTSTVENPQVIAQFAEPA"
BASE COUNT          407 a          619 c          609 g          361 t
ORIGIN      
        1 taagtcgatg accttgatcc cggtccagaa gatctcggtg gccgcgctct gcgatgcaaa
       61 cggcggcggg gcgcgatgaa tcgggcggcg cgggacgtcg tctgcgaagg gtgcaccgcg
      121 atctcccggc gtgccggtga catcgatcag acgtccgagc atggcttcac ctaccggcac
      181 gaggatcggc ccacccgatg cacgcacggc cgtgccgcga ttcagcccgt tggtcgactg
      241 caatgccagc gcgcgcaccg tgcgctcatc cagatgagcc tgcacttccg cgatgatcgg
      301 cggtccgcga tcggtgaaga tggacagcga ctcttcgatg agcggcaacg cggcgttatc
      361 gaaagcaaca tccacgatcg cgccccgcac cgcgactacc cggccctgtg ctccgtcgac
      421 cggacccgcg ttttctactc cgtccgtcga gggatggttt tcggtggggg cgaccggggg
      481 gcgagtgttc aatttgactc cttcagacag actgcatttc cgccgacgaa acggaggcgt
      541 ccggtgacgt gtcgtgaaag tgaagtgcac gttagggacc gcaaatgaac ggcgcgtgct
      601 cgagtcaact ttatcgtctg aggggtggga acccttgatc tttatcaatc gttgatgagg
      661 cgcattcgcg gtaattccgg gcgttcgaac cagcccgcta ttcgacagga cagcgcaatc
      721 gaacagcgcc acgactgcga cgcgctcgca gcagtcgtgg ccggcggtga aggccgcacg
      781 acgaatcaac cttgcgacga atatatgcgt tggtggagcg gcatgtctgg cgctgaaccg
      841 ctccgttgca acgacggcgc acaagacttt ggcggcgccg tcacctgtcg atcagcttcg
      901 ttgaaggttc ccggctggat caaccgatac cgacccgaca atcgctgcgc cggctgtccc
      961 cacaggcagt acgctgcgcc cgtgcgtctc gttgatgatt tcggctgcgg acagatagaa
     1021 cgccagcgcg gccgtgacga gaccgcaata gccgcccgcg tgatgcagcc acacgagtcc
     1081 ggtccattcg cttgcggcca gcacgaagaa ggtgatccaa aggacaaaga acaccaactg
     1141 cagcgcacgc gccgagcgcc atgtcgcgac ccacatatac agcgtgaata cgccccacag
     1201 gaacaagtac cagccaataa aggcggccgg caccttgtcg tgcaggaaca gcacaaaaag
     1261 cgcgagcgac caccagaatg ctccgtagct gaggaaagcg gtggcgccga acgtgttgcc
     1321 gcgcggtatt tccatgagcc cggctaatgc ctgtgccgtg ccgccgtaag cgaaggcgac
     1381 ggcgagcacc atgcccattg aatcgcctgt gaaccagccg gcgttgatca tgctgagcag
     1441 ccaggttgtc agagcaaatc cggcgagccc gagcgacgcg gggttgggtg tcttgaagtt
     1501 catgatgaag tctccttgag gaaacaaaat ctgtcgcgca gcagtccgga cgaatcaacg
     1561 gccgcgcaac gcaagcttag ggttgaacgt tctcgatatg cggtctttaa gcggtcttta
     1621 agcgatcgtt aagccggctc ggcgaactgc gcgatcacct gcggattttc aacggtcgac
     1681 gtatcttgcg cgattgcttc acccttcgcc accgagcgca acatgcggcg cacgaccttt
     1741 ccagaacgcg tttttggcat ggcgtcgccg aaacgaatct ccttcggttt cgcaatcgga
     1801 ccgatctcct tgccaaccca tgctcgcagc tcgtcggcgg tgcgtttcac gtcagcaccg
     1861 gtaggacgcg ggcctttcaa cacgacgaat gcgacgatgg cttccccgaa ggtttcatcg
     1921 gggcgaccaa cgaccgccgc ttcggcgacc agcgggcatg ccgccagggc cgactcgatt
     1981 tccatcgtgc ccatac
//
LOCUS       DATGBK010001383         7110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_294064, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001383 DATGBK010000000
VERSION     DATGBK010001383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 7110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7110
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294064"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>7110
                     /locus_tag="VKJ77_19315"
     CDS             <1..>7110
                     /locus_tag="VKJ77_19315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013104353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HMC47475.1"
                     /translation="ETISHGDGRVNVESLTRFITAYQTVTPLTLGELWAIPIMLRLAL
                     IENLRRVASRVTTDLDDRNLAGHWADRMTETAGHDPKSVVLTVADMARSNPPMASSFV
                     AELARRLQGQSATLALPLTWIEQLLSESGLSIDRMVQLEAQQQAADQVSISNSISSLR
                     LLSATDWRDFVESTSIVEQILSEDPANIYRAMDFATRDRYRHSVERLARASRRPEETV
                     ARAAIDLAHGAVESATGRGVEHHVGFYLLRDGVGGLERRVEAKVNALEVWRRVLRRAP
                     LAIYLALAALITFLFAWPFLDAARHHGWQGGLLAVLAVPVLLMTSRVAIDFVNWFVTL
                     TVQPDWLPRLDFSKGIPAQMRTLVVIPSLIGSAQDVEDLAEGLEVRFLANRDPHLHFS
                     LLTDFMDSASESCDEDAGLMVRARLSIEALNEKYPDTQGDRFFLFHRPRRWNAIEKVW
                     MGHERKRGKIAELDALLRGTAGTAGTGRDRFSLIVGDIAALPRVRYVITLDTDTQLPR
                     DAASQFIGAIAHPLNAAVYDADKQRVSSGHAILQPRVGISLPSTARSAYARLFGGDAG
                     IDPYTRAASDVYQDLFHEGSFIGKGIYELDAFEQAVEGRFPDNRILSHDLIEGCYARA
                     GLLSDVYLYEEYPARYSADVNRRHRWIRGDWQLLPWIFPWAPTEHGGLARNPLSLLSR
                     WKLFDNLRRSAAPVASLAMVLMGWISGWQPVAWTIGVIALTFSMPLVASLIELLQKPH
                     DMPLRRHVALTAQSAGRHLARTMLALAWLPHEAHYSLDAIVRTLWRIGFSKHKLLQWN
                     ASREVERVATNDPKSLYRLMWIGPLLGVGLVLSFIRTPGTLVVAAPFALLWILSPLLA
                     WWISHPPVQNRGALAASEARFLRGLARKTWAFFDDYVGPQDHWLPPDNIQEVPTTGAM
                     IVARRTSPTNMGMGLLAHLAAFDFGYLSAGRMLARIGETLATMDSLERYRNHFFNWYD
                     TSTLQTLAPRYVSTVDSGNLAGHLMTLSRGLLEVADEPAFSPRMFAGLADTLDAYRAA
                     ADVAEFDLDTFAPIETHLSTASARPPRTSAEAVAVMQKVSALAATLAHEIKGPADSDL
                     FFWSQALSAQCRDIVDELGRFDLPTAVDTPPGLPTFRQLAQLDVNLWPDSAAARAIEV
                     RSAAIDRIAQVNRLAELSGDMAMMDFRFLYDINRELLSIGYNVDERRLDTGFYDLLAS
                     EARLTNFVAIAQGQLPQESWFTLGRLLTSTGGVPVLLSWTGSMFEYLMPMLVMPSYEG
                     TLLDQTCRAAVARQIEYGHQLGVPWGVSESGYNVLDAQLNYQYRAFGVPGLGLKRGLG
                     DDVVIAPYATALALMVAPDAACRNLQRLATTGAAGRYGLYEAIDHTQARVPRGQTSVV
                     IQSYMAHHQGMSLLSMASCLLGQPMQRRFESDPQFKATTLLLQERIPKTATEYLPTPG
                     LPDVDAAALIAETKLRIFTDPDRPRPSVQLLSNGRYHVMVSSAGGGYSLCGDLSVTRW
                     REDITSDNWGMFCYLRDVASGEFWSSAHQPTLKRPDLYEAIFSDARAEFRVRERDFDS
                     HTEIVVSPEDDIELRRLRITNRARVRRTIELTSYGEVVLAPAAADAAHRAFSNLFVQT
                     ELLEPLQAILCTRRARSSKEAVPWMCHLLAAHGVDIDAISYETDRARFIGRGRTVVHP
                     TAMDDGSDTQGRLSNSAGSVLDPIVSIRCRITLNPGQSATIDFVTGISDSRDGCLHLI
                     NKYRDRQLADRVFDLAWTHSQVSLRQMNATVSDARLYEQMAASIIYANASLRAEAGVL
                     VANRRNQSGLWGQSISGDLPIVLLQITDMANIELVRQMVQAHAYWRQKGLAVDLVIWN
                     EDHAGYRQNLQDLIMGLIASGTEANLIDRPGGIFVRPAQQLSREDRDLMQAVARIIVA
                     DTRGSLAEQVERRRPDSIAAPFEPVSAYVANRLPEVHARPRADALILQNPYGGFSADG
                     TEYVIKLEPGHKTPAPWANVLANPGFGTVVSESGGAYTWSENAHEFRLTPWANDPVGD
                     TSGEALYLRDEESGHYWSPTPLPRRGSGTYTTRHGFGYSVFEHEEDGIRSELWVYVAL
                     HAPVKFSVLKIRNVSGRARRLSATGYVEWTLGDLREKSAMHIVTEADPLSGALFARND
                     YSMEFGGRVAFFAVDDTVAGFTCDRREFIGRNGGLRAPAAMRQARLSGHAGAGLDPCA
                     ALKTDFDLADGDSREIVFRMGAAHDALSVRGIAKEFRGAVAAANALDAVRKHWQATLG
                     RVQVRTPEPAVDVLVNGWLMYQVIACRFWARSGYYQSGGAFGFRDQLQDSMAMLHATP
                     HLAREHLLLCAAHQFPEGDVQHWWHPPLGRGVRTDCSDDYLWLAVATSRYVSITGDTG
                     VLDERV"
BASE COUNT         1241 a         2203 c         2290 g         1376 t
ORIGIN      
        1 gagacaatct cgcacggtga cggccgcgtc aatgtcgaaa gcctgactcg cttcatcact
       61 gcgtatcaga cggttacgcc gctcacgctg ggtgagcttt gggcaattcc catcatgctg
      121 cggctcgcgt tgatcgagaa cctgcggcgt gttgcaagcc gcgtgacgac tgatctcgac
      181 gatcgtaacc tcgcggggca ttgggccgac cggatgaccg agacggcggg gcacgatccg
      241 aaaagcgtcg tgctgacggt cgccgacatg gcgcgctcga acccgccgat ggccagttcc
      301 ttcgtggccg agctggctcg acgcctgcaa ggccagagcg caacgctggc actgccgctg
      361 acgtggatcg aacaattgtt gtcggagtcg ggcctgagca tcgaccggat ggtgcaactg
      421 gaggcgcagc agcaggcagc agaccaggtg tcgatcagca acagcatcag cagcctgcgc
      481 ttgctctcgg ctaccgactg gcgcgatttc gtcgaaagca cgagcatcgt tgaacagatc
      541 ctgagcgaag atccggccaa tatctaccgg gcgatggatt ttgccacgcg cgaccgttac
      601 cgccacagcg ttgaacggct tgcgcgcgcg agccggcgcc cggaagagac ggtggcgcgc
      661 gccgcgatcg atctcgccca cggagcggtt gagtcggcca cgggccgcgg tgttgaacat
      721 cacgtcgggt tctacctctt gcgcgatggg gttggcgggc ttgaacggcg cgtcgaggcg
      781 aaggtgaatg cgctcgaagt atggcggcgt gtcctgcgcc gggcgccgtt ggccatctat
      841 ctggcactcg cggcgctgat cacgttcctg ttcgcatggc ccttcctgga cgctgcgcgt
      901 caccacggat ggcagggcgg tttgctcgcc gtgctcgcgg taccggtgct gctgatgacc
      961 agccgcgttg ctatcgattt cgtcaactgg ttcgttacgc tgacggtgca acccgactgg
     1021 ctgccgcgcc tcgacttcag caaggggatc ccggcgcaaa tgcgcacgct cgttgtgatt
     1081 ccgtcgttga tcggcagcgc acaagacgtg gaggatctgg cggaggggct ggaagtacgc
     1141 ttcctcgcga atcgcgatcc gcatctgcat ttcagcttgc tgaccgactt catggattcg
     1201 gcctccgaaa gctgcgacga agacgccgga ctgatggtgc gcgcgcggct gagcattgaa
     1261 gccttgaatg aaaaatatcc tgatacccag ggtgaccgct tcttcctgtt tcatcgcccg
     1321 cgacgctgga acgctatcga aaaagtctgg atggggcatg agcgaaagcg cggcaagatc
     1381 gctgaactcg atgcgctgct acgtggtact gcaggcacgg ctggcaccgg acgggatcgt
     1441 ttctcgttga tcgtggggga cattgcggcg ttgccacgcg tgcggtacgt catcacgctc
     1501 gatacggaca cccagctccc gcgcgacgca gccagccagt tcattggcgc aatcgcgcat
     1561 ccgctgaatg cagccgtcta tgacgcggac aagcagcgcg tgagttcggg ccatgcgatt
     1621 ctccagccgc gcgtggggat cagtcttccg agcacggcgc gctcggcgta tgcgcgcctc
     1681 ttcggtggcg acgccggtat tgatccctac acccgcgccg cttcggatgt ctaccaggac
     1741 ctgttccacg aagggtcgtt catcggcaag ggaatctacg aactcgatgc attcgagcag
     1801 gcagtggagg ggcgttttcc tgataatcgt atcctgagcc atgacctcat agaaggctgc
     1861 tacgcacgcg cgggccttct gagtgatgtg tacctgtacg aagagtatcc ggcccgctat
     1921 agcgccgatg tcaaccgccg gcatcgatgg atccgcggcg actggcaact gctgccgtgg
     1981 atcttcccgt gggcgccgac tgaacatggc ggtctggcgc gcaatcctct ttccttgctg
     2041 tcgcgctgga aactgttcga caacctgcgc cgcagcgccg cgcctgtcgc tagcctggcc
     2101 atggtattga tgggctggat aagcggatgg cagcctgttg cctggaccat cggcgtgatt
     2161 gcgttgacgt ttagcatgcc gctggtcgca agcctgatcg agctgcttca gaagccgcac
     2221 gacatgccgc tgcgccgcca tgtggcgttg accgcgcaat cggccggccg tcatctggcg
     2281 cgcaccatgc tcgctcttgc atggctgcct cacgaggcgc actacagcct ggacgccatc
     2341 gtgcgcacac tctggcgcat cgggttcagc aagcacaagt tgctgcaatg gaacgcttcc
     2401 cgcgaagtgg agcgggtcgc aaccaacgat ccgaagtcgc tgtaccggct tatgtggatc
     2461 ggcccgttgc tgggtgtcgg tctggtcctg tcgttcatca ggacaccggg aacgctggtg
     2521 gtggccgcgc cgttcgcgtt gctgtggatt ctgtctccgc tgcttgcctg gtggatcagc
     2581 catcctcccg tccagaaccg gggcgccctg gctgcgagtg aggcgcgttt cctgcgcgga
     2641 ctagcccgca agacatgggc ctttttcgac gactatgtcg gaccacaaga ccactggctg
     2701 ccgcccgaca atatccagga agtccccact acgggcgcaa tgatcgtggc gcgccgtacg
     2761 tctcctacga acatgggcat gggcctgctc gcgcacctgg ccgcttttga ttttggttat
     2821 ctgagtgccg ggcgaatgct cgcgcgcatc ggcgagacgc tcgcgaccat ggatagcctc
     2881 gagcgttatc gcaatcactt cttcaactgg tacgacacga gcacattgca gacgcttgcg
     2941 ccgcgttacg tatcgaccgt cgatagcggc aatctcgctg gccatctgat gaccttgagc
     3001 cgtgggctgc tggaagtggc ggacgaaccc gcgttcagtc cgcgcatgtt cgccggtctc
     3061 gccgataccc tcgacgctta tcgcgcggcg gcagacgtag cagagtttga cctcgataca
     3121 tttgcaccga tcgagactca cttgagcaca gcgtcggcaa ggccgccgcg cacgtcggcc
     3181 gaagcagttg cagtcatgca gaaggtatcg gccttggccg caacgctcgc gcacgagatc
     3241 aaaggtcccg cggatagcga tcttttcttc tggtcacagg cactgtcggc gcaatgccgt
     3301 gacatcgtcg atgagctcgg ccgcttcgac ctgccgacag ccgttgatac gcctccaggt
     3361 ttgccgacgt tccgccaact tgcgcagctc gacgtgaacc tgtggcccga ctcggccgcg
     3421 gcgcgcgcca tcgaagtacg cagcgcggcg atcgatcgca tcgcgcaagt caaccggctg
     3481 gcagaactct ccggtgatat ggcgatgatg gatttcaggt tcctctacga catcaaccgc
     3541 gagttgttga gcattggcta caacgtggac gagcggcgtc tggacactgg tttctatgac
     3601 ctgctcgcat ccgaggcgcg cttgaccaac ttcgtggcga tcgcgcaggg ccagttgccg
     3661 caagagagct ggttcactct gggacgtttg ctcacgagta cggggggtgt tccggtcctg
     3721 ctctcatgga ccggttcaat gttcgagtac ctgatgccga tgctggtcat gccgagctac
     3781 gaaggtacct tgctcgacca gacctgtcgc gcggcggtcg cccggcagat cgagtacggt
     3841 catcaactgg gcgtgccatg gggcgtgtcc gagtcgggct acaacgtgct cgacgcccag
     3901 ttgaattacc agtaccgcgc gttcggcgtt ccaggtctcg ggctgaagcg cggactgggt
     3961 gacgacgttg tcatcgcgcc gtacgccact gcgcttgcgt tgatggtggc gccggacgcc
     4021 gcttgccgta acttgcagcg tctggcaaca acgggggcag ccggtcgcta cggtctgtac
     4081 gaggctatcg atcacactca ggcacgcgtg ccgcgcggcc agacctcggt ggtgatccag
     4141 tcgtacatgg cgcatcacca gggcatgagc ctgttgtcca tggcgagctg cctgctcggg
     4201 caacccatgc aacgccgctt cgaatccgac ccgcagttca aggccacgac cctgctgctt
     4261 caggagcgca ttccgaagac cgcaaccgaa tatctgccga cgccgggcct gcctgacgtc
     4321 gatgcagccg cgctgatagc ggagaccaag ctgcggatct tcaccgaccc cgaccgcccg
     4381 aggccttcgg tgcaactgct gtcgaacggg cggtaccacg tgatggtcag tagcgcaggc
     4441 ggcggctaca gcctttgcgg tgatttatcg gttacacgct ggcgcgagga catcacatcc
     4501 gacaactggg gcatgttctg ttacttgcgc gatgtggcaa gtggcgagtt ctggtcgagc
     4561 gcacatcagc cgacactcaa gcgtcccgat ctatacgaag ccattttctc cgacgcgcgc
     4621 gccgagttcc gcgtgcgtga acgcgacttc gactcgcata ccgagatcgt ggtgtcgccg
     4681 gaagacgata tcgaattgcg gcgcctgcgc atcacgaatc gcgcacgggt gcgtcgcacg
     4741 attgaactga ccagctatgg cgaggtggtg ctggcgcctg cagcggctga cgccgcgcat
     4801 cgcgccttca gcaacctgtt cgtgcagacc gaattgctgg agccgctgca agccatcctg
     4861 tgcacgcgac gggctcgttc gagcaaggaa gcggtgccgt ggatgtgtca tctgctcgcg
     4921 gcgcacggtg tggatatcga cgcgatttcc tacgagaccg accgggcgcg ttttatcggc
     4981 cgggggcgga ctgtggttca tccgaccgcg atggacgacg gctccgatac ccagggccgg
     5041 ctctcgaaca gcgccgggtc ggtgctggac cccatcgttt caattcgctg ccggattacg
     5101 ctcaacccgg gtcagtcggc gacaatcgat tttgtcacag gcataagcga cagccgcgac
     5161 ggctgcctgc acctgatcaa caaataccgc gaccggcaac tcgccgatcg tgtcttcgac
     5221 ctcgcctgga cgcatagcca ggtgtcgttg cggcagatga acgccacggt gtccgatgcg
     5281 cggctctacg agcagatggc ggcatcgatc atctacgcca acgcgtcgtt gcgggccgag
     5341 gctggcgtgc tggtcgccaa ccggcgcaac cagtccggct tgtggggcca gtcgatctcg
     5401 ggtgacctgc ctatcgtgct gctgcagatc accgacatgg ccaacatcga gctggtccgg
     5461 cagatggtgc aggcgcatgc ctactggcgc cagaaagggc tcgctgtcga tctggtcatc
     5521 tggaacgagg accatgccgg ctaccggcag aacctgcagg acctgatcat gggcctgatc
     5581 gcctccggca cggaagcgaa cctgatagat cgccctggcg gaattttcgt tcggccagcg
     5641 cagcaattgt cgcgcgagga tcgtgacctg atgcaagcgg tggcgcgcat tattgtggcc
     5701 gacacgcggg gtagcctggc cgaacaagtc gagcgccggc gccccgattc aatcgccgct
     5761 ccgttcgagc cggtgagcgc ctatgtcgcc aaccggttgc ccgaggtgca cgcacggccg
     5821 cgggccgacg cgttgattct gcagaacccg tacggcggtt tttcggcaga cggcaccgag
     5881 tacgtcatca agctggagcc gggtcacaag accccggcgc catgggccaa cgtgcttgcg
     5941 aacccgggct tcggcacggt cgtctcggag agcggagggg cctacacatg gagcgagaac
     6001 gcacacgagt tcagactgac tccgtgggcg aacgacccgg tcggtgacac gagcggcgaa
     6061 gccttatatc tgcgcgacga ggagagcgga cattactggt cgcccactcc gttgccccgg
     6121 cgcggcagcg gcacgtacac cacccgccac ggcttcggct acagcgtgtt cgagcacgag
     6181 gaagatggca tccgttccga gctgtgggtg tacgtcgcgc tacacgcccc tgtcaaattt
     6241 tcggtgctca agatccgcaa cgtgtcggga cgtgcacgac gcctttcagc caccggttac
     6301 gtcgagtgga cgcttggcga tctgcgcgag aaatctgcca tgcatatcgt caccgaggcc
     6361 gatccgctta gcggggcgct gttcgctcgc aacgactact cgatggagtt cggtggccgc
     6421 gtcgcgttct tcgcggtcga cgacacagtg gcgggcttca cttgcgatcg ccgagaattt
     6481 attggtcgca atggcggcct gcgtgcgccc gctgccatgc gacaggcgcg cctgtcggga
     6541 cacgcgggtg ccggactaga cccgtgtgcg gcgctcaaga cggattttga cctggccgat
     6601 ggcgacagtc gtgagatcgt tttccgaatg ggtgcggcgc acgacgcgct gtccgtgcgt
     6661 ggcattgcga aagagtttcg cggcgcggtt gcggcggcca acgcgctcga tgcggtgcgc
     6721 aagcactggc aggcaacgct tggccgcgtg caggtcagga cgcccgagcc ggcggttgac
     6781 gtgctggtga acggctggct gatgtatcag gtcatagcct gccggttctg ggcacgcagc
     6841 ggttattacc agtctggcgg cgcgtttggt ttccgggacc agttgcagga ttccatggcg
     6901 atgctccacg ccacgccgca tcttgcccgc gagcatctct tgctgtgcgc ggcgcatcag
     6961 tttccagagg gcgacgtaca gcactggtgg catccgccgc tcggccgcgg cgtacgtacc
     7021 gattgctccg acgactacct gtggctcgcc gtggcaacca gccgctacgt gagcatcacc
     7081 ggcgacaccg gtgtgcttga cgagcgcgtc
//
LOCUS       DATGBK010001384         1552 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_201743, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001384 DATGBK010000000
VERSION     DATGBK010001384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201743"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VKJ77_19320"
     CDS             <1..253
                     /locus_tag="VKJ77_19320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HMC47476.1"
                     /translation="FPFDGFGPLYEHHFSVGHTGSPEDVILNRLRSISFIAALGADER
                     EKIDSEVKALIASEPLLASKDVVTVPYETAAFYVEKLAR"
     gene            386..1093
                     /locus_tag="VKJ77_19325"
     CDS             386..1093
                     /locus_tag="VKJ77_19325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47477.1"
                     /translation="MTFRNNGVSPALECRGLSKAYGAGRVLLASLDFTLDPGEFVAIM
                     GDSGVGKSTLLNLIAGLDQADSGEVLIDGTAISSLDDNAATRLRRQKLGFVFQAFHVL
                     PHLTLVQNVALPLLLNDTPPARALDLLEAVGLGGRGDDFPRQLSGGELQRVAIARALV
                     HRPTLILADEPTGNLDPETAHEVLSLFRAEIKANGAAAIMVTHSMAAAASADRILILS
                     EHGLHATQPSQSAGEHQ"
     gene            1090..>1552
                     /locus_tag="VKJ77_19330"
     CDS             1090..>1552
                     /locus_tag="VKJ77_19330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47478.1"
                     /translation="MSGRATAPSRRIAGGRLLARWLLGAEWRSHPARAIVAIATIALG
                     VALGYAVQLINSAAFNEFSAAAKSLSGEADLQVRGAQPTFDENWYPRLATTPGVALAS
                     PVLDLDVTVPGQTAALKVLGIDVFRASRITPELIGVPSGQRPLDTLSDDAIF"
BASE COUNT          282 a          492 c          478 g          300 t
ORIGIN      
        1 gttcccgttc gacgggttcg gcccgctcta tgaacaccat ttcagcgtcg gtcataccgg
       61 ctcgccagaa gacgtgatcc tgaacagact gcgctccatc agcttcattg cggcgctggg
      121 cgccgacgag cgcgagaaga tcgatagcga ggtcaaggcg ttgatcgcaa gtgaaccgtt
      181 gctcgcgagc aaggacgtgg tgacggttcc gtacgagacg gcggcgtttt atgtcgagaa
      241 actcgcccgc taaaaggcgg tcagggttga ggaaactgga cgcgtgagga gtggtgcatt
      301 gtagccgtgc cttgcacgcg tttggcactt ctctgtcaca gtggaggagt acaagccagt
      361 tccactcact gacgacccga tcttcatgac ctttcgcaac aacggcgttt cccccgcact
      421 cgaatgtcgc ggcttgagca aagcctacgg cgctggccgc gtgctgctgg caagcctcga
      481 cttcacgctt gacccgggag agttcgtcgc gatcatgggt gattcaggcg tcggcaagtc
      541 gacgcttttg aacctgatcg cgggcctcga tcaagccgac agcggtgaag tgctgatcga
      601 cggcacggca atttccagtc tcgacgataa cgccgccact cgccttcggc gacaaaagct
      661 cggcttcgtg ttccaggcat ttcacgtgct gccgcacctg acgctggttc aaaatgtcgc
      721 gcttccgcta ttgctcaacg acacgccacc ggctcgcgcg ctcgatttgc tggaagccgt
      781 cggcctgggt ggccgtggcg acgacttccc acggcagcta tcgggcggag agctgcagcg
      841 tgtagccatc gctcgcgcgc tggtgcatcg gcccacgctg atcctggccg acgaacccac
      901 cggcaacctg gaccccgaga ccgcgcacga agtgctctcg ttgttccgag cggagatcaa
      961 ggcgaacggc gccgctgcca tcatggtcac gcactccatg gctgcggcag cgagcgcgga
     1021 ccggatactt attctgagcg agcatggcct gcatgctacg cagccttccc agtccgctgg
     1081 tgagcatcag tgagcggccg cgcgaccgca ccctcgcggc ggattgcagg cggccggcta
     1141 ctcgcgcgct ggttactcgg tgcggagtgg cgcagtcatc cggctcgagc gattgtggct
     1201 atcgcaacga ttgcgctggg cgtggcgctc ggatatgccg tgcagctcat caacagtgcc
     1261 gcattcaacg agttttccgc agccgccaaa agtctttccg gcgaggccga cttgcaggtc
     1321 cgcggcgcac agccgacctt cgatgaaaac tggtacccgc gtctcgcaac aacaccaggc
     1381 gtagctttag ccagccccgt tctggatctg gacgtgaccg tgcccggaca gaccgctgcg
     1441 ttgaaagtgc ttggcatcga cgtattcagg gcgagccgca tcacgccgga actgatcggc
     1501 gtgccgtctg ggcagcgtcc gctcgatacc ctttccgacg acgccatctt cc
//
LOCUS       DATGBK010001385         6502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_271368, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001385 DATGBK010000000
VERSION     DATGBK010001385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6502
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271368"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VKJ77_19335"
     CDS             <1..219
                     /locus_tag="VKJ77_19335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HMC47479.1"
                     /translation="RAELEPIAAEFGVDIEWIDIDTDPALEALYDELVPVLVLDGVEL
                     CHYRLDETRVRSALLGTLPSMPGTRISP"
     gene            351..2141
                     /gene="lepA"
                     /locus_tag="VKJ77_19340"
     CDS             351..2141
                     /gene="lepA"
                     /locus_tag="VKJ77_19340"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HMC47480.1"
                     /translation="MNHIRNFSIIAHIDHGKSTLADRIIQLCGGLSDREMDAQVLDSM
                     DLERERGITIKAQTAALSYKALDGQVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVV
                     DASQGVEAQTVANCYMAIELGVEVVPVLNKIDLPAADPENAISEIEDVIGIDATDAAR
                     CSAKTGLGVTDVLEALIAKVPPPKGDPDAPLQALIIDSWFDNYVGVVMLVRIKNGTLR
                     PKEKIKMMASGAIYPVESLGVFAPKATNLASLSAGQVGFIIAGIKELQAAKVGDTVTT
                     VARPAEAPLPGFKEVKPQVFAGLYPIEANQYDALRESLEKLKLNDSSLQYEPEVSQAL
                     GFGFRCGFLGLLHMEIVQERLEREFDMDLITTAPTVVYEVVKRDGTLIQVENPAKMPE
                     PSYIEEVREPIVTVNLYMPQEYVGAVITLCTNKRGSQINMLYHGRQVQLTYEIPMAEI
                     VLDFFDRLKSTSRGYASMDYEFKEYRASDVVKVDMLINGDKVDALSVIVHRSQSQHRG
                     REVASKMRELIPRQMYDVAIQATIGANIIARENIKALRKNVLAKCYGGDISRKKKLLE
                     KQKAGKKRMKQVGSVEIPQEAFLAILRVED"
     gene            2163..3056
                     /gene="lepB"
                     /locus_tag="VKJ77_19345"
     CDS             2163..3056
                     /gene="lepB"
                     /locus_tag="VKJ77_19345"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009890017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HMC47481.1"
                     /translation="MNFALILLVLVIVTGIAWVFDKLVFEPKRRRAADAAVAEFDQQQ
                     ARVEARFADENAPQTRARLRDEKLRQPWYLEYSASFFPVILVVFVVRSFIVEPFKIPS
                     GSMVPTLLVGDFILVNKFEYGLRLPISNTKLTGGTPLTRGDVVVFRYPKDESVDYIKR
                     VIGLPGDTVAYQDKKLTINGKAVPETPLPDFFDDERIGYAKQFEEDLDGRKNAILNNA
                     QVPPFVIGADDFPFRDNCNYNAQGVICKVPAGNYFMMGDNRDNSADSRYWGFVPDANI
                     VGRAFFIWMNFSSLKRIGVFH"
     gene            3281..4657
                     /gene="rnc"
                     /locus_tag="VKJ77_19350"
     CDS             3281..4657
                     /gene="rnc"
                     /locus_tag="VKJ77_19350"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HMC47482.1"
                     /translation="MPSTPLESRLQYEFRNAELLRQAMTHRSHSATHNERLEFLGDSV
                     LNCVVAALLFQRFAKLDEGDLSRVRANLVKQQSLYEIAQALNVSEALRLGEGELRSGG
                     FRRPSILADTLEAIFGAVFLDGGFDAALQVIKRLYTPILDHIDPRTIGKDAKTLLQEY
                     LQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALD
                     ELASAAPAMTAKPKRKGSRAAKQAELEIVPGVTGVQAALDLRAPDRRERARASASSSN
                     SASHGSNTHNDPERPATAPFAVIRASHVEPSAGAFASAEKTERATIHRTEKAEKAEKA
                     AAEAPAVRSESADKPSVAHVESAVDNAVHNPVEKSATKADSAGEKAAAKQADKQAEKQ
                     AEKPAAKNAEAPAVEKPAAPARQREDVSAAHSATASKGAESVEPKVEAHLEESVDETV
                     VRAADTGH"
     gene            4764..5663
                     /gene="era"
                     /locus_tag="VKJ77_19355"
     CDS             4764..5663
                     /gene="era"
                     /locus_tag="VKJ77_19355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009913163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HMC47483.1"
                     /translation="MNAPTPSGFRCGMVAIVGRPNVGKSTLMNALVGQKVSITSRKAQ
                     TTRHRITGIHTLEDAQYIFVDTPGFQTKHSGALNRSLNRAVTSTLTSVDAILFVIEAG
                     RFGPDDQKVLDLIPNDTPCLLIANKLDHVSDKETLFPFMQKMSALHDFKEIVPMTAKH
                     PDDITRLMTVVKPYLPEGSPIYGEDDLTDRSERFLAAEILREKVFRWTGDELPYTSTV
                     LIDKWETEGRLRRIFATILVERDTHKAMIIGQKGAKLKQISTEARLDMEKLFDGPVYL
                     ETFIKVKSGWADNEAGLRAYGYE"
     gene            5650..>6502
                     /gene="recO"
                     /locus_tag="VKJ77_19360"
     CDS             5650..>6502
                     /gene="recO"
                     /locus_tag="VKJ77_19360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HMC47484.1"
                     /translation="MGTNDAWMTQSSNAESDPLADDNFSADEPSTPAPKRRRTASAST
                     SAKSSAPKESKEPKAPRPPRAAPRSDFRIAEQPSFVLHSYPYRETSLVLDVFSRDHGR
                     VALVAKGAKRPHSALRGVLQTFQPLGLSWTGKGEVRTLTQAEWVGGMLPLAGDALLCG
                     FYVNELLVKFCAREDAHPALFNHYVLTLSRLAHGEPALHALRSFERVLLRETGYAMAL
                     NKTIARQPVLADQKYVFDPERGVRDASDDVPSQWPVIAGQTLLDMEKDDYSRPQTAAQ
                     SKTLMRFL"
BASE COUNT         1403 a         1914 c         1943 g         1242 t
ORIGIN      
        1 cgcgccgagc ttgagccgat tgcggctgag ttcggcgtcg atatcgagtg gatcgatatc
       61 gataccgatc ctgctctcga agcgttatac gacgaactcg tgcctgttct ggtgctggat
      121 ggcgtggagt tatgccacta ccggctggat gaaacgcgtg tgcggagtgc gctcctcggc
      181 acgcttccaa gcatgcccgg cacgcgcata agtccctgag caatcggacc tttcccgtaa
      241 aatccgccgt cagcccgcct tttcggctaa aatagacaag tttttcaccc ccattttcaa
      301 ggcgtgctcc gcgtttgtct gggcgcgcct ttttgcttga tcggcactga atgaatcata
      361 ttcgtaactt ctcgatcatt gcgcacatcg accacggtaa gtcgacgctc gccgatcgca
      421 tcatccagtt gtgcggcggc ttgtccgacc gcgagatgga cgcgcaggtg ctcgactcca
      481 tggatctcga gcgcgaacgc ggcattacca tcaaggcgca aaccgcggca ctgagctaca
      541 aagccctcga cggtcaggtc tacaacctga atctcatcga caccccgggt cacgtcgact
      601 tctcgtacga agtcagccgc tcgctgtccg cttgcgaagg cgcgctgctc gtggtcgacg
      661 ccagccaggg cgtggaagcg cagacggtcg ccaattgcta catggcgatc gaactgggcg
      721 tggaagtcgt gccggtcctg aacaagatcg acctgcccgc agcagacccc gaaaacgcaa
      781 tttcggaaat cgaagatgtg atcggtattg atgcaaccga tgccgctcgc tgcagcgcca
      841 agacgggcct cggcgtgacc gacgtgctcg aggcgctgat cgccaaggtg ccgcccccga
      901 agggcgatcc ggacgcaccg ctgcaggcgc tgatcatcga ttcatggttc gataattacg
      961 tcggcgtggt catgctcgtg cgcatcaaga acggcacgct gcgtccgaag gaaaagatca
     1021 agatgatggc gtccggcgca atttatccgg tcgaaagtct cggcgtgttc gcgccgaaag
     1081 ccacgaatct cgcgtcgctg tcggcggggc aggtgggctt catcatcgcg ggcatcaagg
     1141 aattgcaggc ggcgaaagtc ggcgatacgg tcaccaccgt cgcgcgcccg gccgaagcgc
     1201 cgctgcccgg tttcaaggaa gtgaagccgc aagtgttcgc gggtttgtat ccgatcgaag
     1261 cgaatcagta cgacgcactg cgtgaatcgc tggaaaagct gaagctgaac gactcctcgc
     1321 tgcaatacga gccggaagtg tcgcaagcgc ttggtttcgg tttccgatgc ggctttctcg
     1381 gtctcctgca catggagatc gtgcaggagc ggctcgagcg cgagttcgac atggacctca
     1441 tcaccacggc gccgaccgtg gtgtacgaag tcgtgaagcg cgacggcacg ctgattcagg
     1501 tcgagaaccc ggccaagatg ccggagcctt cttacattga agaagtgcgc gagccgattg
     1561 tgaccgtgaa cctgtacatg ccgcaggagt atgtgggcgc ggtgatcacg ctctgtacga
     1621 acaagcgcgg ttcgcagatc aacatgctgt atcacggtcg tcaggttcag ctcacctacg
     1681 aaatcccgat ggcggaaatc gtgctggatt tctttgaccg gctgaagtcg acgtcgcgcg
     1741 gttacgcatc gatggattac gagttcaagg agtatcgcgc gtcggatgtg gtgaaggtcg
     1801 acatgctgat caatggcgac aaggtcgacg cattgtcagt gatcgtgcac cgttcgcaga
     1861 gccagcatcg cggacgcgaa gtggcgtcga agatgcgcga actgattccg cggcaaatgt
     1921 acgacgtcgc aatccaggcg accattggcg cgaacattat cgcgcgcgag aacattaaag
     1981 cattgcgtaa gaacgttctg gcaaagtgct acggcggcga tatctcgcga aagaaaaagc
     2041 ttctggaaaa gcagaaggcc ggcaagaagc gcatgaaaca agtcggttcg gtcgagattc
     2101 cgcaagaagc tttcctcgcg attcttcgcg tcgaagatta ataaaacaac cggaaacgat
     2161 tgatgaattt tgcgttgatt cttttggtgc tcgtcatcgt gacggggatt gcgtgggtgt
     2221 tcgacaaact ggtgttcgag ccgaaacggc gccgggcagc cgatgcagcg gtagcggaat
     2281 tcgaccagca gcaggcccgc gtcgaggctc gtttcgccga cgaaaacgcg ccgcaaacgc
     2341 gcgctcgcct gcgcgatgaa aagctccgcc agccgtggta cctggaatat tccgcgagct
     2401 tctttccggt gatcctggtg gtgttcgtgg tgcgctcgtt catagtcgaa ccgttcaaga
     2461 ttccgtcggg atccatggtg ccgacactgc tggtgggcga tttcatcctc gtcaataaat
     2521 tcgaatatgg cctgcgtctg ccgatcagca ataccaagct gaccggcggc acgccgctca
     2581 cgcgcggtga cgtagtcgtg ttccgttatc cgaaagacga gtcggtggat tacatcaagc
     2641 gtgtgatcgg tcttcccggc gacaccgttg cgtaccagga caagaagctg accatcaacg
     2701 gcaaggctgt tccggaaacg ccgctgcctg atttcttcga cgacgaacgc attggttatg
     2761 caaagcaatt cgaagaagat ctcgacggcc gcaagaacgc gatcctgaat aacgcgcaag
     2821 tgccgccgtt cgtgattggc gccgacgact tcccgttccg cgacaactgc aactacaacg
     2881 ctcaaggcgt catctgcaaa gtgccggcgg gtaactattt catgatgggc gacaaccgcg
     2941 ataacagtgc agacagtcgt tattggggtt tcgtgcctga tgcgaatatc gtcggccgcg
     3001 cattctttat ctggatgaac ttcagcagtt tgaagcgcat tggggtgttc cattgaagcg
     3061 cggttttgag cgcgggtttg atcaggatca ccagcagtaa tttcgttcga caactacgcc
     3121 gcttcatcgc ggcgtagttg ttattgcaag tcacctttga gccgcctaga aacagcacga
     3181 agaaccgcgg ctaacgtgtg cttgctgtgt cattttcctt gcggttttcc ggcctttcag
     3241 ccggattcgc ccctcccggc gcccgcgtta tactctgccc atgccctcaa ccccgttgga
     3301 aagccggctc cagtacgaat ttcgcaatgc ggaattgctg cgccaggcga tgacccaccg
     3361 cagtcacagt gccacgcaca atgaacgact cgaatttctc ggagattccg ttctaaattg
     3421 cgtggtggct gcgcttttgt tccagcgatt cgcaaaactc gacgaaggcg atctttctcg
     3481 cgtccgggca aatctcgtca agcagcagtc gctttatgag attgcgcagg cgctgaatgt
     3541 ctccgaggcg ctgcggctgg gcgagggcga gttgcgcagc ggcggctttc gccgcccgtc
     3601 catattggct gacacgctcg aagccatctt tggcgcggtc tttctggacg gtggttttga
     3661 cgccgcgctt caggtcataa agcggcttta cacgccaatc ctcgatcaca tcgatccacg
     3721 cacgatcggt aaagacgcga agacgctgct gcaggaatat ctgcagggcc acaagatcgc
     3781 attgccgacc tatacggtcg tggccacgca cggcgcggcg cataaccagc aattcgaagt
     3841 ggaatgcacg gtgccgaagc tcgatgtaaa ggtatcgggt tccggtgcga gccggcgcgc
     3901 ggccgaacag gcggcggcaa agaaggcgct cgatgaactg gcttccgccg caccggccat
     3961 gacggcgaag ccgaagcgca agggctcgcg cgcagccaag caggcggaac ttgaaatcgt
     4021 gccgggcgtg acgggcgtgc aggcggcgct cgacctgcgc gcgccggacc gacgcgaacg
     4081 tgcacgcgca agcgccagca gcagtaatag cgccagccat ggcagcaaca cgcataacga
     4141 tcccgagcgt cctgccactg cgccattcgc tgtgattcgc gcatcgcacg tggaaccgtc
     4201 ggccggtgca ttcgccagcg cggagaaaac cgagcgagcg acgattcatc ggacagagaa
     4261 ggcggagaag gccgagaaag cagcggccga ggcgccggcg gtccgaagcg aaagcgcgga
     4321 caagccatcg gttgcgcacg tcgaatccgc agtggataac gctgtgcata acccggtgga
     4381 aaaaagcgcc acgaaggcag atagtgcagg tgaaaaggct gccgcgaagc aggctgacaa
     4441 gcaagccgaa aagcaggccg aaaagcctgc tgcgaaaaat gccgaggcgc ccgctgtcga
     4501 gaagcccgca gctcctgcgc ggcagcgcga agacgtgtcc gccgcgcatt ctgcaacggc
     4561 ctcgaagggc gcagagagcg ttgaaccaaa ggtcgaagca catctggaag aaagcgtcga
     4621 tgaaaccgtc gtacgcgccg ccgataccgg ccattgacgt gagctttgaa gctcgccgct
     4681 aaagctcgca cgctaccgat cacaagcata atcccgacgc cacgcgtccc cacgaattta
     4741 ccgaatccgc agccgcacac attatgaacg cacccactcc ctctggtttc cgttgcggca
     4801 tggtcgcgat cgtcggtcgg ccaaacgtcg gcaaatcgac cttgatgaac gcgctggtcg
     4861 ggcagaaagt cagcatcacg tcgcgcaagg cgcagaccac gcgccatcgc atcaccggca
     4921 ttcatacgct ggaagacgcg cagtacattt tcgtcgatac cccgggtttt cagaccaagc
     4981 acagtggcgc gctgaaccgt tcgctgaacc gcgcggtgac gtcgacgctc acgtccgtcg
     5041 atgcgattct gttcgtgatc gaagcgggcc gtttcggtcc cgacgaccag aaggtgctcg
     5101 acctgattcc gaacgacacg ccgtgcctgt tgatcgcgaa caagctcgat cacgtgagcg
     5161 acaaagaaac gctgttcccg tttatgcaga aaatgagcgc gctgcacgac ttcaaggaaa
     5221 tcgtgccgat gaccgcgaag catcccgacg acatcacgcg tctgatgacg gtcgtgaaac
     5281 catatttgcc tgaaggctcg cctatttacg gtgaagacga tctcaccgat cgcagtgagc
     5341 gttttctcgc cgccgaaatc ctgcgcgaga aagtgttccg ctggaccggc gacgaactgc
     5401 cgtacacgag tacggtactt atcgataaat gggaaacgga aggccgcttg cgccgcattt
     5461 tcgcgacgat cctggtcgaa cgcgataccc acaaggcgat gatcatcggc cagaagggtg
     5521 cgaagctgaa gcagatcagc accgaagcgc gtctcgacat ggaaaagctc ttcgacggcc
     5581 ccgtgtatct cgagaccttc atcaaggtga agagcggctg ggcggacaac gaagcgggac
     5641 tgcgcgccta tgggtacgaa tgacgcgtgg atgacccagt cctccaacgc agaatcagat
     5701 ccgctcgccg acgataattt cagcgctgac gagccctcaa cgcccgcgcc gaaaaggcgc
     5761 cggacggcgt cggcgtccac gtctgcaaaa tcctccgcgc ctaaagaatc caaagagccc
     5821 aaagccccaa gaccgccgcg cgccgcgccg cgctcggact ttcgtatcgc tgagcagcca
     5881 tcgttcgtgc tgcacagcta tccgtatcgc gagacgagcc tcgtgctcga cgtattttca
     5941 cgcgatcacg gccgcgtcgc gctggttgcc aagggcgcca agcgcccgca ttccgcgttg
     6001 cgcggcgtgc tccaaacttt ccagccgctg gggttatcgt ggacggggaa gggtgaagtc
     6061 cgcaccctga cgcaggcgga atgggtcggc ggcatgttgc ccctcgctgg cgatgcgctg
     6121 ttgtgcggct tctacgtcaa cgaactgctc gtcaagttct gcgctcgcga agacgcgcat
     6181 cccgcgttgt tcaatcatta cgtgctgacg ctctcgcgtc tcgcacacgg cgagcccgcc
     6241 ttgcacgcgc tgcgctcctt cgagcgcgtg ctgctgcgtg aaaccggtta cgcgatggcg
     6301 ttgaataaaa ccatcgcgcg ccaaccggtt ctcgccgatc agaaatacgt cttcgatccg
     6361 gaacgcggtg tgcgcgacgc gtccgatgat gtaccgtcgc aatggccggt gatcgctggt
     6421 caaactcttc tcgacatgga gaaggacgat tacagccgcc cgcagacggc cgcgcaaagc
     6481 aagacgctga tgcgctttct gc
//
LOCUS       DATGBK010001386         2083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_85512, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001386 DATGBK010000000
VERSION     DATGBK010001386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85512"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            123..269
                     /locus_tag="VKJ77_19365"
     CDS             123..269
                     /locus_tag="VKJ77_19365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47485.1"
                     /translation="MAVHPDEVFIHEVAHDRYTTDMDTPGNHAGILARLAQMPTTVAD
                     AVQK"
     gene            complement(312..752)
                     /locus_tag="VKJ77_19370"
     CDS             complement(312..752)
                     /locus_tag="VKJ77_19370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HMC47486.1"
                     /translation="MTSVAQILKSKPNQSVYTITASESVYDAIKLMAEKQIGALVVTD
                     GDSIAGIITERDYARKVVLMDRSSKATPVRGIMTQAVRFVRPDQSSDECMALMTTHRM
                     RHLPVLDQERLVGMISIGDLVKNIIEEQEFTIKQLEHYITGEHA"
     gene            1031..1324
                     /locus_tag="VKJ77_19375"
     CDS             1031..1324
                     /locus_tag="VKJ77_19375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020830892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GYD domain-containing protein"
                     /protein_id="HMC47487.1"
                     /translation="MATYVVLANYTDQGIRSVKNSPQRASQTAEMAKGFGCEMKEIYW
                     TLGQYDIVAIVEAPDDQSLAAFGLALGSGGNIRTQALRAFTRDEAGPIFSRLP"
     gene            complement(1353..>2083)
                     /locus_tag="VKJ77_19380"
     CDS             complement(1353..>2083)
                     /locus_tag="VKJ77_19380"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018312451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HMC47488.1"
                     /translation="AVKCAFVDRDRLVSDPEFNRVPVGDMLSTDTLDAHARSINLHKA
                     RAWPHVFRPGDTVFIGASDGQGRSVSLLQTVYFDWGSGVVAGDTGILWHNRGASFSVD
                     PAHHNAVQPGKRPFHTLNPGMYLKDGRPHLLFGTQGADGQPQTLAAVLTRLIDYEMDP
                     LSALARPRFLLGKTFSDTRDALKLEQDAGAEVFAALAARGHEVSAIAAQSPLAGHPGV
                     IRIESDGALSGAHDPRSDGQAMGL"
BASE COUNT          412 a          637 c          631 g          403 t
ORIGIN      
        1 caccatgcgc gcggcagggg tgcgcataga cagcggcgcg tgatccgggc ggcaagcgtg
       61 gcgcccagtg cgataacgcc gaggccatcg gcggatacgg caacccaggg tgccgaacgc
      121 tgatggctgt gcatccggac gaggtattca tccatgaagt cgcgcatgat cgctacacga
      181 ccgacatgga cacgccgggg aaccatgcgg gcattctggc gcgcctggcg cagatgccca
      241 ccacggttgc ggacgccgtg caaaaatgaa accgaggccg tggcgttttg attcccagcg
      301 atgccaccgg ttcaagcatg ctcgcccgta atgtagtgtt cgagttgctt gatcgtgaac
      361 tcctgttcct caatgatgtt cttcaccagg tcgccgatcg agatcatgcc gaccagtcgc
      421 tcctgatcga gcaccggcag atggcgcatg cggtgggtgg tcatcagcgc catgcattcg
      481 tcgcttgact gatccggccg cacgaaacgc accgcttggg tcatgatgcc gcgcactggc
      541 gtcgccttcg acgagcggtc catcagcacc acttttcgcg catagtcacg ctccgtgatg
      601 atcccggcaa tgctgtcgcc gtcggtgacg accagcgcac cgatctgttt ctccgccatg
      661 agtttgatcg cgtcgtagac gctttccgat gccgtgatcg tgtagacgct ttggttcggt
      721 ttcgatttga ggatttgcgc aacgcttgtc atggagtggc tccatttttc actcgcagcc
      781 cgatggcaac gcgagacgcg ctgtcgtgaa ggactaacag tttcagtata ggtggcgttg
      841 tcggcgccga aggacgagaa cgcgttttct cgttgcgact cgcgactcgc gcagccgcga
      901 tgccatgcag gcagaccctg ggaaaacggc cgatcgtgct tgatttcatt gcctagaatc
      961 aagttacgcg caaacggttc ccgctagcgc ggatggttcc cgatacgtat caatcgtagg
     1021 gagaattgtc atggcgacat atgtggttct tgcaaactac actgaccaag gaatccgctc
     1081 cgtcaagaac agcccgcaac gggcgagtca gacggcggaa atggccaagg gttttggctg
     1141 cgaaatgaaa gagatctact ggacgttggg ccagtacgat attgtcgcga tcgttgaggc
     1201 accggacgat caaagcctcg ctgcattcgg tctcgcgctt ggctcaggcg gcaatatccg
     1261 tacgcaggcg ctgcgtgctt tcacgaggga tgaagccggc ccgattttca gcaggctgcc
     1321 ataaagcggc gaccgcttcc aggaactgaa ccttaaaggc ccatggcctg gccgtcgcta
     1381 cgcggatcat gagccccgga cagtgcgccg tccgattcaa tgcgaatcac ccccggatga
     1441 cccgcaagcg gactctgcgc tgcaatagcg ctcacttcat gcccgcgcgc cgctagcgcg
     1501 gcgaacacct cggcacccgc gtcttgctcc agcttcaacg catcgcgggt atccgagaag
     1561 gtcttgccga gcaggaaacg cggacgggcc agcgcgctca acgggtccat ctcgtagtcg
     1621 atcagccgcg tcaacaccgc tgccaacgtc tgcggctgac cgtccgcacc ctgcgtgccg
     1681 aacagcagat gtggccggcc atccttcagg tacatgccgg gattgagcgt atgaaaaggc
     1741 cgcttgcccg gctgcaccgc attgtggtgc gccggatcaa cgctgaacga cgcgccgcgg
     1801 ttgtgccaga gaataccggt gtctcctgcc acaacaccgc tgccccaatc gaagtagacc
     1861 gtctgcagca gactgacgct gcgtccttgc ccgtccgatg caccgatgaa caccgtatcg
     1921 cccgggcgga atacgtgcgg ccaggcccgc gctttgtgca ggttgatcga gcgcgcgtgg
     1981 gcatcgagcg tgtcggtcga gagcatgtcg ccgacgggaa cgcggttgaa ctctggatca
     2041 gagaccaaac gatcccgatc cacgaacgcg catttcacgg cct
//
LOCUS       DATGBK010001387         3465 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_317045, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001387 DATGBK010000000
VERSION     DATGBK010001387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3465
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317045"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..805
                     /gene="ssuC"
                     /locus_tag="VKJ77_19385"
     CDS             11..805
                     /gene="ssuC"
                     /locus_tag="VKJ77_19385"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007737335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter permease
                     SsuC"
                     /protein_id="HMC47489.1"
                     /translation="MNVVPFFRRAGVQAAPWLVPILILIAWELAARTGGLSSRVLPEP
                     LAVVKAAWELIQSGDMWANVKVSAWRALTGFAIGGGIGFVLGLGTGLFKPAEIALDST
                     VQMIRNIPALAMIPLVILWFGIGEEAKLFLVALGVFFPVYTNTYHGIRSVDADLIEMA
                     RSYGLSGFALYRDVILPGALPSILVGVRFAFGLMWVMLIVAETISAQSGIGYMTMNAR
                     EFLQTDVVVVGILLYALLGKLADMLAKSIERATLRWHPAYQKGAKP"
     gene            802..1641
                     /locus_tag="VKJ77_19390"
     CDS             802..1641
                     /locus_tag="VKJ77_19390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47490.1"
                     /translation="MTSSYASYASGNAVLEGNEPEVATRGRSPAAVPPRTPPADMAVA
                     LQGVDKHFGEREVLSNFDFAIERGSFVSIVGRSGCGKSTLLRLIAGLEKATGGVVQRN
                     AAAGASVLETRIMFQDARLLPWKSVLQNVMLGLPSSSREDARATLAEVGLSAREGDWP
                     AQLSGGQRQRVALARALVHRPDLLLLDEPLGALDALTRIEMHALIERLWREHRFTALL
                     VTHDVQEAVALGERIVLIEAGKISFDAAITLQRPRSRAAEGFAELEDQVLSRVLRNGA
                     QPG"
     gene            1714..1929
                     /locus_tag="VKJ77_19395"
     CDS             1714..1929
                     /locus_tag="VKJ77_19395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HMC47491.1"
                     /translation="MGITAINVRNQFKGHIKEIIRGSVVSEVDVETPYGIVTSVITTR
                     SIDELELKVGSEVIAFVKSTEVSIARL"
     gene            complement(1957..2703)
                     /locus_tag="VKJ77_19400"
     CDS             complement(1957..2703)
                     /locus_tag="VKJ77_19400"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007743011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47492.1"
                     /translation="MSAPLLDLRVSAKHYDTRTILERMTLTIQRGEIVSLVGPSGCGK
                     STLLRILAGLDRDFNGEILIDGKPQQGPSSRIGVIFQEPRLLPWLSVADNVAFPAGPR
                     RGRDPRVGELLAEVGLAEARAYLPKQLSGGMAQRVAIARGLFSEPDLLLLDEPFSAVD
                     AMTRMRLQDLLLSLVRSHGTAALLVTHDLDEALYLSDRVLLMTPSGKTGAGRIVREIE
                     VSVERPRDRRDVLLASLRGELLEGLGAVVA"
     gene            complement(2700..>3465)
                     /locus_tag="VKJ77_19405"
     CDS             complement(2700..>3465)
                     /locus_tag="VKJ77_19405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006396830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47493.1"
                     /translation="LQPWRIAGLLLPFAFLGLMELLVRTHVVPEHLVPAPSSIVETLW
                     QLGGDRLARHIGASSLRVFAGFAIGAVVAIFFGAAMGLSRRMDTLLDPSFQALRAIPS
                     LAWVPVLLLWMGIDEAPKITLIAIGAFFPVHLSVVAGIRGVDRKLIELGEVNRLSQRA
                     LFTRILLPASLPHIFTGLRTGLSLAWMFMVAAELIAATRGLGYLLSDGRETGRPDLVF
                     GAILLLALLGKLSDSVLKAIETHVLSWRDTSTGNSR"
BASE COUNT          676 a         1033 c         1070 g          686 t
ORIGIN      
        1 cggaggtccg atgaacgtgg tcccgttttt tcgtcgcgcc ggcgtacaag ccgcgccttg
       61 gcttgtgccc atcctgatcc tgattgcatg ggaactggcc gcgcgcacgg gcggtttgtc
      121 gtcgcgggta ttgcccgagc cgcttgccgt ggtcaaagcc gcgtgggagc tgatccagtc
      181 gggcgacatg tgggcgaacg tgaaggtcag cgcatggcgc gcactgacgg gctttgcgat
      241 cggcggtggc atcggcttcg tgcttgggct gggaaccggg ctcttcaagc cggccgagat
      301 cgcgctcgac tcgacagtgc agatgatccg caatatcccc gcgctcgcga tgatcccgct
      361 ggtgatcctg tggttcggca tcggcgagga agcgaagttg ttcctggtcg cgctcggcgt
      421 gtttttcccc gtctatacga atacgtacca cggcattcgg tccgttgatg cagacctgat
      481 cgagatggct cgcagctacg gactctcggg ctttgcgctg tatcgcgacg tgatcctgcc
      541 gggggcattg ccttccattc tggtgggcgt gcggtttgca ttcgggttga tgtgggtgat
      601 gctgattgtc gcggagacca tctcggcgca atcagggatc ggctatatga cgatgaacgc
      661 gcgtgagttc ctgcagaccg atgtggtggt ggtcggcatc ctgctttacg cgctgctcgg
      721 caaactcgcc gacatgctcg cgaagtcgat cgagcgcgcc acgctgcgtt ggcatcctgc
      781 gtatcagaag ggagcaaaac cgtgacatca agctatgcat cgtacgcatc gggtaatgcc
      841 gtgctggaag gcaacgaacc ggaagttgcc acacgcgggc gttcaccggc agcggttccc
      901 cctcgtacgc cccccgcgga catggccgtc gcgctgcaag gcgtcgacaa acatttcggc
      961 gagcgcgagg tgttgtcgaa tttcgatttc gctatcgagc gcggcagttt tgtatcgata
     1021 gtcggccgca gcggctgtgg caagtccacg ttgctgcgcc tgatcgcggg ccttgaaaaa
     1081 gcgaccggcg gcgtagtgca gcgcaatgcg gcggcgggag ccagcgtcct ggagacgcgc
     1141 atcatgttcc aggatgcgcg cttgctgccg tggaaaagcg tgctgcaaaa cgtcatgctc
     1201 ggcttgccga gttcgtctcg tgaagacgct cgcgcgacgc tggctgaagt gggcttgagt
     1261 gcccgggagg gcgattggcc cgcgcaattg tcgggtggtc agcggcaacg ggtggcgctt
     1321 gcgcgcgcgc tcgtgcaccg gccagacctg ctgttgctgg atgaaccgct gggcgcgctc
     1381 gatgcgctga cgcgtattga aatgcacgcg ctgatcgagc gcttgtggcg tgagcatcgc
     1441 ttcaccgcac tgctcgtcac gcacgatgtg caggaagcgg tagcgctggg cgagcggatc
     1501 gtgttgatcg aagcggggaa gatttccttc gatgccgcca tcaccctgca acgcccgcgt
     1561 tcgcgcgcgg cagaaggttt cgccgagttg gaagaccagg tgttgtcgcg tgttctcagg
     1621 aacggtgcac agccgggcta gatttggtta tcgattcact tattgccgtt gtcgaccggc
     1681 cccggcacta ttcaatcaat acggagcatc accatgggca tcacggcaat caatgtacgc
     1741 aaccagttca aagggcacat caaggagatc attcgcggtt cggtcgtctc ggaagtcgat
     1801 gtggaaacgc cttatggcat tgtcacgtcg gtgatcacca cgcgttcgat cgatgagctc
     1861 gaactgaagg tagggagtga agtcattgcg tttgtgaagt cgaccgaagt ctcgattgca
     1921 cggctttgac cctgtcctga aggggcagga gcgcgctcag gccactaccg cccccagacc
     1981 ttccagcaat tcgccgcgca ggctcgcaag caagacatcg cgacgatcac gcggccgctc
     2041 gacgctcacc tcgatctcac gcacgatccg ccccgcgccg gttttacccg acggtgtcat
     2101 caggagcacg cggtccgaga gataaagcgc ctcgtccaga tcgtgtgtga ccaggagcgc
     2161 tgccgtccca tgcgagcgca cgagcgataa caacagatcc tgcaaccgca tccgcgtcat
     2221 tgcatcgacc gcgctgaagg gctcgtctag cagcagcaaa tccggctcgg aaaacagccc
     2281 tcttgcgatt gccacccgct gcgccatgcc gccggacaac tgcttgggaa gataagcgcg
     2341 cgcctcggca agacccactt cagccagcaa ttcccccaca cgcgggtcac gtccacgacg
     2401 cggacctgcc ggaaacgcga cgttgtccgc cacgcttagc catggcaata agcgcggctc
     2461 ctgaaagatc actccgatcc tgcttgacgg cccttgttgt ggttttccat cgatcaagat
     2521 ctcgccgttg aagtcacggt ctagacccgc aagaatccgc aatagcgtgc tcttgccgca
     2581 accgctcgga ccgaccagac tcacgatctc gccgcgttga atcgtgagcg tcatacgttc
     2641 gagtatggtg cgtgtgtcgt aatgttttgc cgaaacacgc aggtcgagaa gaggagcgct
     2701 catcggctgt ttccggtact tgtgtcgcgc catgaaagca cgtgggtttc gattgccttg
     2761 agcacgctat cgctcagttt tccgagcaac gcgagtaaca ggattgcacc gaacacaagg
     2821 tctggacgcc ctgtctcacg gccgtcgctc agcagataac ccagaccacg cgtggctgcg
     2881 atcagctcgg cggcgaccat gaacatccat gcaaggctca ggccggttcg taggccggta
     2941 aagatgtgcg gtagcgatgc cgggagcaga atgcgcgtaa atagcgctcg ctgactcagg
     3001 cgatttacct cgcccagttc gatcagctta cggtctacgc cacgaatgcc ggcgaccacg
     3061 ctcaagtgca ccggaaagaa tgctccgata gcaatcagcg taattttggg cgcttcgtcg
     3121 atacccatcc acagcaggag aacaggaacc catgccagcg atggaatggc tcttagcgcc
     3181 tggaaacttg gatcgagcag cgtgtccatt cttcggctca ggcccatcgc cgcaccaaaa
     3241 aaaattgcca caaccgcgcc aatagcaaag cctgcaaaca cgcgcaagct actggcgccg
     3301 atatgccgcg ccagacggtc gccgccgagt tgccagagcg tttctactat gctgcttggc
     3361 gcgggaacca gatgctcggg caccacatgg gttctcacca gaagctccat aagcccgaga
     3421 aacgcgaagg gcagcagaag tccggcgatg cgccatggtt gcagc
//
LOCUS       DATGBK010001388         2619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_247668, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001388 DATGBK010000000
VERSION     DATGBK010001388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2619
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247668"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..444)
                     /locus_tag="VKJ77_19410"
     CDS             complement(<1..444)
                     /locus_tag="VKJ77_19410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007743530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47494.1"
                     /translation="MAAISTGLKHRERRPASFYWLALVFGLFVLFLYGPVITIFILSF
                     QGPEGGLTFPMRGVSLHWFAVLRQGVGDIDIWAAFGRSVRLAAVVTVLTVLFSVAAGL
                     AFRKRFRGDTAVFYVSVASLIMPSIIVSLGIGLTFRLLDNCVKYLA"
     gene            complement(446..1360)
                     /locus_tag="VKJ77_19415"
     CDS             complement(446..1360)
                     /locus_tag="VKJ77_19415"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47495.1"
                     /translation="MASIELPIQPLEATVKHRRAAAWLQATPLALTFVMFFLVPLVIT
                     LIVSFWDFNEYQIIPAFTFKNYAAIFDGCSSMTDVCVTFKTYWSTIKFCAIVWAVTLV
                     IGFTIAYFLSFHVRSSGMQTVLFLVCTIPFWTSNVIRMISWIPLLGRNGLVNQALLSS
                     HMIDKPLDWLLYSNFSVVLAFVHLYTFFMIVPIFNAMMRIDRSLLEAARDAGASGWQV
                     IREVVLPLSKTGIVIGSIFVITIVMGDFLTVGVMGGQQIASVGKIIQVQTGYLQFPAA
                     AANAIILLAVVLMIVWALTRVVDIRKEL"
     gene            complement(1433..>2619)
                     /locus_tag="VKJ77_19420"
     CDS             complement(1433..>2619)
                     /locus_tag="VKJ77_19420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PotD/PotF family extracellular solute-binding
                     protein"
                     /protein_id="HMC47496.1"
                     /translation="FPYVHAQEKITLRYLGTAVNQSSDIAKKFQEDTGIQIQYIPVTT
                     DDVAKRIITQPNSFDIVDTEYFSLKKLIPAGTLAGMDARKIKLADKITPVLTRGEVDG
                     KKIGDQGTAPKKVMFLTGPRSTEFSATPTEWMTLIPTTYNADTLGIRPDLIKRPINSW
                     AELLNPEFKGRAALLNIPAIGIMDSAMAIEAMGHVKYGDKGNMTKAEIDQTIKILIEA
                     KRAGQFRAFWKDFNESVNLMASGEVVIQSMWSPAVTKVRTMGIACKFQPLKEGYRSWA
                     SGFGLPRSLQGRKLDAAYEFINWFQDGWAGAYLMRQGYYAGVLETAKTHMQPYEWDYW
                     IEGKPAAQDIKAPDGQLLEKVGTVRDGGSYNQRMGAIACWNAVMDENIYMVQKWNEFI
                     AA"
BASE COUNT          585 a          789 c          755 g          490 t
ORIGIN      
        1 ggcaagatac ttcacgcagt tatcgagcag ccggaacgtc agcccaattc ccagcgacac
       61 gatgatcgac ggcatgatca ggctcgcgac ggacacatag aacacggccg tgtcgccgcg
      121 aaagcgcttg cgaaacgcga gccctgcagc gaccgagaac agcaccgtca acaccgtgac
      181 gacggcggcg agacgtaccg accgtccgaa cgcagcccag atgtcgatgt cacccacgcc
      241 ttgacgcaac accgcgaacc agtgcagcga aacaccgcgc atggggaacg tgaggccgcc
      301 ttccggcccc tggaacgaca ggataaagat ggtgataacc ggtccgtaga ggaacagcac
      361 gaataacccg aataccagcg caagccagta gaaactggcg ggacgccgct cgcggtgctt
      421 cagacccgta gaaatcgcgg ccatgtcaaa gctccttgcg gatatcgact acacgcgtga
      481 gagcccagac aatcatcagc acgacggcca gcaggatgat cgcgttggcc gcggcagcgg
      541 ggaactgaag atagcctgtt tgcacctgga tgatctttcc gaccgacgcg atctgctgcc
      601 cacccatgac acccaccgtc aggaaatcgc ccatgacgat ggtgatcacg aaaatcgagc
      661 cgatcacaat ccccgtcttc gataacggca acaccacttc gcggatcact tgccagccgc
      721 tcgcgcccgc gtcgcgcgcg gcttcgagca acgaccggtc gatgcgcatc atggcgttga
      781 agatcggcac gatcatgaag aacgtataga gatgcacgaa ggcgagcacg accgagaagt
      841 tcgaataaag cagccagtca agcggcttgt cgatcatatg cgatgacagc agcgcctggt
      901 tcacgagccc gttgcggccg agcagcggta tccacgagat catccggatc acgttcgacg
      961 tccagaacgg aatcgtgcag acgaggaaca agaccgtctg catacctgat gatcgaacgt
     1021 gaaacgacag gaagtaggcg atcgtaaaac cgatcaccaa cgtcactgcc cagacgatgg
     1081 cgcagaattt aatcgtcgac cagtaggtct tgaaggtcac gcaaacatcg gtcatcgaag
     1141 agcagccgtc gaagatcgcc gcgtagttct tgaacgtaaa cgccgggatg atctggtatt
     1201 cgttaaagtc ccagaaactc acgatcaacg tgataaccag cggcacgaga aagaacatga
     1261 cgaaggtcag cgcaagcggc gttgcctgta gccatgcggc cgcacgccgg tgcttgacgg
     1321 tcgcctcaag cggttggatg ggaagctcga tcgatgccat cgcggattac ctattggata
     1381 aacagaggcg gccggcgtgc atccacgcac gccggccttg cgccaaatca cactaagccg
     1441 cgatgaactc gttccatttc tggaccatat agatgttctc gtccatcacc gcgttccagc
     1501 acgcgatcgc ccccatgcgc tggttgtacg aaccgccgtc gcgcaccgtg ccgacttttt
     1561 cgagcaactg gccgtcgggc gccttgatgt cctgcgcggc cggcttgcct tcgatccagt
     1621 agtcccattc atacggctgc atatgggtct tggcggtctc gagcacaccc gcgtaatagc
     1681 cctggcgcat gaggtaagca ccggcccaac cgtcctggaa ccagttgatg aactcatagg
     1741 ccgcgtcgag cttacgaccc tgcaacgaac ggggcagccc gaagcccgac gcccacgagc
     1801 gataaccctc cttcagcggc tgaaacttgc acgcaatgcc catcgtgcgg accttcgtga
     1861 cggcgggtga ccacatcgac tggatcacca cctcgccgga cgccatcagg ttcacgcttt
     1921 cgttaaagtc cttccagaac gcgcggaact ggcccgcacg cttcgcttcg atcaggatct
     1981 tgatggtctg gtcgatctcg gccttggtca tgttgccctt gtcgccgtac ttgacatggc
     2041 ccattgcctc gatcgccatg gccgaatcca tgatgccgat ggcaggaatg ttcaggagtg
     2101 cggcacgccc cttgaattca gggttaagca actctgccca gctgttgatc gggcgtttga
     2161 tcaggtcggg acggatgccg agcgtatcgg cgttataggt ggtcgggatc agcgtcatcc
     2221 attcggtggg cgtagccgag aattcggtcg agcgcgggcc cgtcaggaac atcaccttct
     2281 tgggagccgt gccctggtcg ccgatcttct tgccatcgac ctcaccgcgg gtgagcaccg
     2341 gcgtgatctt gtcggcgagc ttgatctttc ttgcgtccat accggcgagc gtgccggcgg
     2401 ggatcagctt cttcagcgag aagtactcgg tatcgacaat atcgaatgaa ttcggctgcg
     2461 tgatgatgcg cttggcgacg tcgtcggtgg tgaccgggat gtactggatc tggatgccgg
     2521 tatcttcctg gaatttcttg gcgatatccg aactctggtt cactgccgtg cccaggtagc
     2581 gaagcgtgat cttttcctgc gcgtgcacgt acggaaacc
//
LOCUS       DATGBK010001389         3128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_317061, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001389 DATGBK010000000
VERSION     DATGBK010001389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317061"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            145..2523
                     /locus_tag="VKJ77_19425"
     CDS             145..2523
                     /locus_tag="VKJ77_19425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HMC47497.1"
                     /translation="MPPRQFSKPVLLREARPRRRRLFAALLAVPGLMPALAHAQLSGA
                     AADTQPLGDPWSLRLAPQLEERPLKQGDQPATFVLGDHTTGTADQDMAAKGSAELRRN
                     VSVIKSDALHYDQDTDMADAYGHVRIFSNGNSFIGPEAHLKVEANEGYMTNPKYRFNL
                     SNGSGSAQRADLIDDEQTRVDHGTYTACSCETDPAWYIKGTSFDFDTGANEGVAHNGV
                     LFFQGVPVFASPWLSFPLTSERRSGILPPTVSVNSTTGFEVEVPYYFNIAPNRDLVVT
                     PRLMTRRGIQIQSTFRYLSPTYSGTITGEFLPQDLQTHTNRYAIYIQHQQNFGGGFGA
                     YINYNKVSDNQYPEDLGNASNQIINGTQVLYQQEVGVTYNNGPWSILAHEQRWQVLPP
                     ATSPYAREPQLNVLYNKYNVGGFDYGAEADYTRFTTTIADSTEGQRVVFNPYLSYSVT
                     GPGYFVTPKIQYHFASYDLNEIGSAANGTPAGQPKNLSESIPTVSFDTGLVFDRSVRI
                     FGEDYIQTLEPRLYYVYTPYRNQEFAPIFDTGQADFSLAEIYTPNTYAGNDRIADANR
                     LTVGLTSRFINPATGDERARFVIAQQYYFQPQRVTITEGQPLDQAKHSDLILGASFKL
                     GAGFSQETAFQYNADNNQLVRSSVGFGFSPAAREVINIGYRYTRANETTLSTSPINQI
                     LVSAQWPLSRHIYSVARVNYDLAGHRLVDGLLGFQYDADCWTLGVGLQRYANGITSTG
                     SNTAGTRILAQMTFKGLSNVDNGLTAAFRAGVNGYTPPPPPPAPLARYTNYE"
     gene            2636..>3128
                     /locus_tag="VKJ77_19430"
     CDS             2636..>3128
                     /locus_tag="VKJ77_19430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HMC47498.1"
                     /translation="MSNMNKLKCAMFAAGVFAAALLAGPVAHAQALAPTTTAGGAQVA
                     DSVAAVVNSDVITERELADRTGLIVRRLQQQNAPVPPADQLQRQVLDQMVIERIQLQK
                     AKEDNITIDDATVQRTLERLAQQNNMTFDVYRARIESQGVPWTTFQRDARTELTLSKL
                     REKE"
BASE COUNT          641 a          966 c          946 g          575 t
ORIGIN      
        1 ccgagatcac cgcccgtacc atccatcgat cgatttattt tcgttcgcag cgaaccgtca
       61 actccggtgg cgcgagttcc ggtggctgtg cccgggtgct ctcgtcgagc gcggggcgcg
      121 ggcgcgattg aacagcactc aaacatgccg ccacgacagt tttccaaacc agttctcttg
      181 cgcgaagcgc ggccacgcag gcggcggctg ttcgcggcat tgttagccgt gccgggtctc
      241 atgcccgcgc tcgcgcacgc gcagctatcg ggtgcggcag cggacacgca gcccctcggc
      301 gacccgtgga gcctccggct cgcgccgcag cttgaagagc ggccgctgaa gcagggcgac
      361 cagccggcta cgttcgtcct cggcgaccac accacgggca cggccgacca ggacatggcc
      421 gcgaagggtt cggccgaatt gcgccgcaat gtctcggtga tcaagtcgga tgcgctgcat
      481 tacgaccagg acaccgacat ggccgacgct tacggacatg tcaggatctt cagcaacggt
      541 aattcgttca ttggcccgga agcgcacttg aaggtggagg cgaacgaggg ttacatgacg
      601 aacccgaagt accgcttcaa tctctcgaac ggctcgggca gcgcgcagcg cgcggacctg
      661 attgatgacg aacaaacgcg cgtggatcac ggcacgtaca cggcgtgttc gtgcgagacg
      721 gatccggcct ggtacatcaa gggtacgtcg ttcgacttcg ataccggcgc gaacgaaggc
      781 gtcgcgcaca acggcgtgct gtttttccag ggcgtaccgg tgttcgcgag cccgtggctc
      841 tcgttcccgc tgaccagcga acggcgcagc ggcatcttgc cgcccacggt atcggtgaat
      901 tcgaccaccg gttttgaagt ggaggtgccg tattacttca atatcgcgcc gaatcgcgat
      961 ttggtggtca cgccacgcct gatgacgcgg cgcggtattc agatccagtc gacgttccgg
     1021 tatttgtcgc cgacttattc gggcacgatc accggcgagt tcctgccgca ggacctgcag
     1081 acgcatacga accgctatgc gatctacatc cagcaccagc agaactttgg tggcggtttc
     1141 ggcgcgtata tcaactacaa caaggtctcg gacaatcagt atccggaaga cctgggtaac
     1201 gcgtcgaacc agatcatcaa cggcacgcag gtcctgtatc agcaggaagt gggtgttacg
     1261 tacaacaacg gaccgtggtc gattctcgcg cacgagcagc gctggcaggt gttgccgccg
     1321 gcgacttcac cgtacgcccg tgaaccgcag ttgaacgtgc tgtacaacaa gtacaacgtc
     1381 ggcggtttcg attacggcgc ggaagcggac tacacgcgct ttacgacgac catcgcggac
     1441 tccacggaag gtcagcgcgt tgtttttaat ccgtacctga gctacagcgt taccggcccc
     1501 ggttatttcg ttacgccgaa gatccagtat cacttcgcgt cgtacgacct gaacgagatc
     1561 ggcagcgcgg ccaacggcac gcccgcgggc cagccgaaga acctgtcgga atccattccg
     1621 accgtcagct tcgacaccgg cctggtgttc gaccgctcgg tgcgaatctt cggggaggat
     1681 tacatccaga ccctggagcc gcgcctgtat tacgtgtaca cgccgtaccg caatcaggaa
     1741 ttcgcgccta ttttcgacac cggccaggcc gacttcagcc tcgctgaaat ctacacgccg
     1801 aacacgtacg cgggtaacga ccgtattgcg gatgcaaacc gtctgacggt aggcctgact
     1861 tcgcgtttca tcaacccggc aacgggcgac gaacgtgcgc gttttgtgat cgcgcagcag
     1921 tattatttcc agccgcagcg cgtcacgatc acggaaggcc agccgctcga ccaagcgaaa
     1981 cactcggacc tgatcctggg cgcgtccttc aagctgggcg ctggtttttc acaggaaact
     2041 gcgttccaat ataatgccga caacaaccag ttggtgcgct cgagcgtcgg tttcgggttc
     2101 agcccggcgg cgcgcgaagt catcaatatt ggatacaggt acacgcgggc gaacgagacc
     2161 acgctgtcca cctcgccgat caaccagatt ctggtttcgg cacaatggcc gctatcgcga
     2221 cacatttata gcgtcgcccg ggtgaactac gatctggcag gccatcgtct cgtcgacggg
     2281 ctgctgggct tccagtacga tgccgactgc tggactctgg gcgtgggctt gcagcgttac
     2341 gcaaacggta tcactagcac cggaagtaac actgccggga cgcgtattct cgcgcaaatg
     2401 acgttcaagg gcttgtcgaa cgtcgataat ggcctgaccg cagcgttccg cgccggcgtc
     2461 aacggttaca cgccgccacc gccgccgccc gcaccgctcg cgcgttacac gaattacgaa
     2521 tgagcgtgcc gagtgtgtac cgaaatggtt gaggtacgcc gtaggtaaca gtgcaatagg
     2581 gcatcagggc aacaggcaac agggtcggtc accggccgca atcgatggag tatctgtgtc
     2641 aaacatgaac aagttgaagt gcgcaatgtt cgcggcaggt gttttcgccg cagctttact
     2701 ggccggcccg gtcgcgcacg ctcaggcgtt ggcgcccacg accacggcgg gcggcgcgca
     2761 ggttgcggac tctgtcgctg cggtcgtgaa cagcgacgtc atcacggaac gtgaactcgc
     2821 cgaccgcacg ggtctgatcg tgcgccgcct gcaacagcag aacgcgccgg ttcccccggc
     2881 ggatcaattg caacgccagg tgctcgacca gatggtgatc gagcgcatcc agttgcagaa
     2941 ggcgaaggaa gacaacatca ccattgacga cgctaccgtg caacgcacgc tcgagcgtct
     3001 cgcgcagcaa aacaacatga cgttcgacgt gtaccgcgcg cgcatcgagt cgcaaggggt
     3061 gccctggacg accttccagc gcgatgcacg caccgagctg acgctgtcga aactgcgtga
     3121 gaaagagg
//
LOCUS       DATGBK010001390         1657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_40177, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001390 DATGBK010000000
VERSION     DATGBK010001390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40177"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1657)
                     /locus_tag="VKJ77_19435"
     CDS             complement(<1..>1657)
                     /locus_tag="VKJ77_19435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004187151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VC_2705 family sodium/solute symporter"
                     /protein_id="HMC47499.1"
                     /translation="SAFNGMATAADWLSAASFIGLAGSIYATGYDGLAYMMGWTGGYC
                     LVAFLLAPYVRKLARYTIPDFLGTRFSSNLVRGIAAFAAILCSFVYLVAQIQGIGLIA
                     SRFIGIDFAIGIFCGLAGILVCSFLGGMRAVTWTQVAQYIILISAMLIPVSMIAHREG
                     LGWLPQLSYGRLLERVEVLERAVDRSPEEARVRDDYRRQAQQIQMQIEELPESFHTGQ
                     ARLVEEIADLRRHNGPLRDIGERESELASFPKTPAEAKVQWNRARDAMIERAAPPVPM
                     AQAFPPSDDENARLHRRNFLSLLLCLSLGTASLPHILTRYNTTTSVASARRSVGWTLF
                     FVALFYVSVPVLAVLIKYEMLTGIVGHKFADLPNWVMQWRKVEPYLIRISDANGDGIV
                     RWSGIQMQPDMVVLAAPEIAGLPYVMSGLIAAGALAAALSTADGLLLTIANALSHDVY
                     YCMVDKTASSQRRVTISKILLLGVALFASYVASLNTGNILFLVGAAFSLAASSLFPVL
                     VLGVFWKRTTKLGAVAGMLAGLSVCVYYIVSTYQYFTQMTGFSG"
BASE COUNT          398 a          551 c          447 g          261 t
ORIGIN      
        1 cgcccgagaa ccccgtcatc tgtgtgaagt actgatacgt cgacacgatg taatagacgc
       61 acacgctcaa gccggccagc atccccgcga ccgctccaag cttcgttgtc cgcttccaga
      121 acacccccag caccaacacc ggaaacaaac tggacgccgc caacgaaaac gccgccccca
      181 ccaaaaacaa gatattcccg gtattgagcg acgccacata cgaagcaaac aacgccaccc
      241 ccaacaacaa tatcttcgat atggttaccc ttcgctgact gctcgcggtc ttgtcgacca
      301 tgcagtaata gacgtcgtgc gaaagcgcat tcgcgatcgt cagcaacaag ccatcggcgg
      361 tagaaagcgc cgctgccaac gcccccgccg caatcaagcc cgacatcaca tacggcagcc
      421 cggcaatctc cggcgcggcg agcacgacca tatccggttg catctgaata ccggaccagc
      481 gcacgatgcc gtcaccgttc gcatcgctga tacgaatcag atacggctcc accttgcgcc
      541 attgcatgac ccagttaggg agatcagcga acttgtgccc gacgattccc gtcagcatct
      601 cgtacttgat cagtaccgcg agcacgggca cgctcacata aaacagcgcg acgaaaaaca
      661 gcgtccatcc aaccgagcgc cgcgcggaag ctactgatgt ggtcgtgtta tagcgcgtca
      721 gaatatgcgg caagctcgcc gttcccagcg acaagcacag cagcaacgac aagaaattcc
      781 gcctgtgcag ccgggcgttt tcatcgtcgg aaggggggaa tgcttgagcc attggcaccg
      841 gcggcgcagc gcgctcgatc atcgcatcgc gggcgcggtt ccattgcacc ttcgcctcgg
      901 cgggtgtctt cgggaacgac gccagttcgc tttcccgctc gccaatatcg cgcaacggac
      961 cgttatgccg gcgcaagtcc gctatctcct caacaagccg cgcctgcccg gtatgaaacg
     1021 attccggcaa ctcctcgatc tgcatctgga tctgctgcgc ctgacgccgg taatcgtcgc
     1081 ggaccctggc ttcttcaggc gagcggtcaa ccgcccgttc aagcacttcc acacgctcca
     1141 gcaaccgtcc atatgaaagc tgcggcaacc agccgagccc ttcgcgatgc gcgatcatcg
     1201 agacgggaat cagcatggcg ctgatcagga tgatgtactg cgcgacctgc gtccacgtga
     1261 ccgcacgcat gccgccaaga aacgagcaca cgaggatacc ggcgagcccg cagaagatcc
     1321 cgatggcgaa atcgataccg ataaaccgtg acgcaatcag cccgataccc tggatctgcg
     1381 cgacgagata aacgaacgag cacaggatgg ccgcgaacgc cgcgatccca cgcacgaggt
     1441 tgctcgaaaa gcgcgtaccg aggaagtcag ggatggtgta gcgggcgagc ttgcgaacgt
     1501 agggcgcaag caggaacgcg acgaggcagt aaccaccggt ccagcccatc atgtaggcaa
     1561 gaccgtcgta accggttgcg tagatggacc cggccagccc gataaacgac gccgccgata
     1621 accagtccgc cgcggtggcc atgccattga acgcgga
//
LOCUS       DATGBK010001391         1857 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_247692, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001391 DATGBK010000000
VERSION     DATGBK010001391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247692"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..910
                     /gene="nodI"
                     /locus_tag="VKJ77_19440"
     CDS             11..910
                     /gene="nodI"
                     /locus_tag="VKJ77_19440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004538328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nodulation factor ABC transporter ATP-binding
                     protein NodI"
                     /protein_id="HMC47500.1"
                     /translation="MEFIDVEKHYGDKTVVNGLSFHVQPGECFGLLGPNGAGKTTTLK
                     MLLGLTAPDAGTIRLVDEPIPSRARYARRRVGVVPQFDNLDPDFTVRENLLVFGRYFG
                     MSGSEIEAVVPSLLEFARLESKANARVGELSGGMKRRLTLARALVNDPDVLVMDEPTT
                     GLDPQARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKVAEGKPDDL
                     IQRVIGCDVIEIYGPDPQALRDELLPFVGRMEISGETLFCYVDDPAPVHQRVKGRPGV
                     RYLHRPANLEDVFLRLTGREMVD"
     gene            971..1771
                     /locus_tag="VKJ77_19445"
     CDS             971..1771
                     /locus_tag="VKJ77_19445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47501.1"
                     /translation="MRKPHREPFLSAMPANASNWMSVWRRNYLVWKKLAIASMFGNLA
                     DPMIYLFGLGLGLGLMVGHVDGVSYIAFLAAGTVASSVMMSASFEAMYSGFSRMHVQR
                     TWEAIMHTPLTLGDIVLAEIVWAASKSVLSGVAIMLVAGVLGYASFPTMLYALPVIVL
                     TGLAFSSTAMIVTAVAPSYDFFMFYQTLALTPMLLLSGVFFPLTQLPAVAQNVSLLLP
                     LSHAVALIRPAMLDRPAEHVVLHVAVLAAYAIVPFFICAVLFRRRMMR"
BASE COUNT          318 a          531 c          597 g          411 t
ORIGIN      
        1 aaatccggcg atcgagttta tcgacgtcga aaaacactac ggtgacaaga cggtcgtgaa
       61 cggcctgtcg ttccacgtcc agcccggcga gtgtttcggc ctgcttgggc cgaacggcgc
      121 gggcaagacg accacgctca aaatgctgct cggcctgacc gcgccggatg cgggcacgat
      181 ccgtctcgtc gatgaaccga ttccctcgcg tgctcgttac gcccggcgcc gtgtaggcgt
      241 ggtgccgcaa ttcgacaacc tcgacccgga cttcaccgtc cgagaaaacc tgctcgtatt
      301 cggccggtat ttcggcatga gcggcagcga gattgaagcc gtggtgccat cgctgctcga
      361 atttgcgcgg ctggaaagca aggcgaacgc gcgggtcggt gagttatctg gcggcatgaa
      421 acggcggctg acgctggcgc gcgcactggt caacgatccc gacgtgctgg tcatggacga
      481 accgaccact gggcttgatc cgcaagcgcg gcacctgatt tgggaacggc tgcgctcgct
      541 gcttgcacgc ggcaagacga ttctgctcac cacgcatttc atggaggagg ccgaacggct
      601 ttgcgatcgg ctgtgcgtaa tcgaagaagg ccgcaaagtg gccgaaggca aacccgacga
      661 cctgatccag cgggtcatcg gctgcgatgt gatcgagatc tacggtcccg atccgcaggc
      721 ccttcgcgac gagcttttgc cgttcgtcgg tcgcatggag atcagcggcg agacgctgtt
      781 ttgttatgtc gatgaccccg cgcccgtgca tcagcgggtc aagggacggc ccggcgtgcg
      841 ttacctgcac cggccggcca atcttgaaga tgtgtttttg cgcctgaccg ggcgcgagat
      901 ggtggactga tcgatgtcga gcgaaccgaa tgtgaacgct gttgattcgc ctccgcgtgc
      961 tacgggtggg gtgcgcaagc ctcatcgcga accttttcta agtgcgatgc ccgcgaacgc
     1021 atcgaactgg atgtcggtct ggcggcgaaa ttatctcgtc tggaaaaagc tggcgattgc
     1081 gtcgatgttt ggcaacctcg ccgacccaat gatctatctt ttcggcctgg gcctcgggct
     1141 tggcctaatg gtcggccacg tggacggcgt ctcttacatc gcgtttctcg cagcgggtac
     1201 ggtggcgtcg agtgtgatga tgtcggcgag tttcgaggcc atgtactccg gcttctcgcg
     1261 catgcatgtg cagcgcacgt gggaagcgat catgcatacg ccgctcacgt tgggcgatat
     1321 cgtgctcgcg gaaattgtgt gggcggcgag caaatcggtg ctgtcgggcg tggcaatcat
     1381 gttggtggcg ggcgtgctcg gctatgcaag ttttccgacg atgctgtacg cgttgcccgt
     1441 gattgtcctg actggtttgg cgttttccag caccgcgatg atcgtgacgg ccgtggcgcc
     1501 gagttacgac ttcttcatgt tctaccagac gctcgcgctc acacccatgt tgctgctttc
     1561 cggcgtgttt ttcccgctca cgcagttgcc ggcggtggcg caaaacgtct cgctgttgtt
     1621 gccgttgtcg cacgccgtcg cgctgatccg gcccgcgatg ctcgaccggc cggcagaaca
     1681 tgtggtgctg catgtggccg tgctcgcggc gtatgccatc gtgccgtttt ttatctgcgc
     1741 ggtgctgttc cgtcgacgga tgatgcgttg agcggattga ctgagaatgt aagactcctc
     1801 gaagccgttg taccccaaaa aagcccgttc caacgtgagt tgagacgggc tttttaa
//
LOCUS       DATGBK010001392         1507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_224970, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001392 DATGBK010000000
VERSION     DATGBK010001392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224970"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..426
                     /locus_tag="VKJ77_19450"
     CDS             148..426
                     /locus_tag="VKJ77_19450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47502.1"
                     /translation="MNKNLIAALLVAASAALAAPAFASSGYGPAPSYNPSVGAPASQR
                     GQSVQTVAAEQAQANANATSSYGGVQDTQSQSGSRVNLSNERSLYSHN"
     gene            709..>1507
                     /locus_tag="VKJ77_19455"
     CDS             709..>1507
                     /locus_tag="VKJ77_19455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017425473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin reductase"
                     /protein_id="HMC47503.1"
                     /translation="MSSSVITVCVDAVRDEAPGIRSYAISRVDGAPLDAYEPGAHIDV
                     TSPSGVTRQYSLCGDPDLREQHLFAVKREDASRGGSSSLHDHVVAGARLTIGPPRSLF
                     RLDATATDHILIAAGIGITPLLSMAYRLVRQNASFKLHYFVRDRASAAFLPLLSQPPF
                     ADHVVLHCGVEPDRIDAEVTGCLVGVASSTHVYTCGPGAFMDRVVNVAERSVPAESIH
                     LERFAADPATTTAVASALDFFDVEIASTGSRVRVNKGMSIVEALASID"
BASE COUNT          328 a          485 c          398 g          296 t
ORIGIN      
        1 ctcattatta tcagattgcg aaaagtctat tgcatcctat cgacacaata aatcgatagt
       61 aggggtatac actgcatttc atcgacgcag tgagcagaaa aagcaagccg ctacgcccct
      121 taaaactcat gcaaatcgga gcacatcatg aacaagaatc ttatcgccgc attgttggtc
      181 gccgcttccg cagctttggc tgcccccgca ttcgccagca gcggctacgg cccggcaccg
      241 tcgtacaacc cgagcgtcgg cgcaccggca tcgcaacgcg gccaaagcgt tcaaaccgtg
      301 gcagctgaac aagcgcaagc caacgcgaac gcaacgtcgt cgtatggcgg cgtgcaagac
      361 acgcaatcgc aatcaggcag ccgtgtgaac ctgagcaatg aacgctcgct ctactcgcac
      421 aactaattcc aaggccgtac gaccggagcg atcgatcatt cgatcaacat ccgctccgtc
      481 gtaacgccga agagtgcaca agccgaagcc cgggagaacg caagttctcc cgggcttcgg
      541 ctttttgtac gtcttccgtg gcaagccaaa taagtggggc tgatagcttg atcaatttat
      601 tatcgatttg gcctatctgg aatctgcctg tatttttcca ctacagcgcg ctccggccaa
      661 atccttgatg ccactgcgca cgtcaatcgc aaaacaaccc cacacgccat gagttcttcc
      721 gttatcaccg tctgcgtcga tgctgtgcgc gacgaagccc ccggcatccg ctcctacgcc
      781 atctcccgcg tcgacggcgc gccgctcgac gcgtacgagc cgggcgctca catcgacgta
      841 accagtccct ccggcgtcac acggcaatat tcgctgtgtg gcgatccgga tctaagagag
      901 cagcatcttt tcgcggtcaa gcgcgaagac gcttcgcgag gaggatcgag ttcgttgcac
      961 gaccacgtag tggccggcgc acggctgacc atagggccgc cgcgcagcct gtttcgcctc
     1021 gacgcgacgg ctaccgacca tatcctgatc gcagcgggga ttggcattac gccgctactc
     1081 agcatggcgt accgcctggt tcgacagaac gcgtcgttca agctgcacta tttcgttcgc
     1141 gaccgggcca gcgcggcatt cctcccgtta ctctcacagc cgccattcgc cgatcacgtg
     1201 gtgcttcact gcggcgtcga accggatcga atcgatgccg aagtgacagg gtgtctcgtg
     1261 ggcgtcgctt ccagcaccca cgtctacaca tgcggcccgg gcgcgttcat ggatcgcgtg
     1321 gtgaacgtgg cagaacgatc cgtccccgct gaatcaatac atctcgaacg attcgccgcc
     1381 gatcccgcta caaccaccgc cgtagcgtcc gctctcgatt tcttcgacgt ggaaatcgcc
     1441 agcacggggt ccagagtacg cgtgaacaag ggcatgtcga tagtggaagc gctcgcgtcc
     1501 atcgaca
//
LOCUS       DATGBK010001393         2516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_201850, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001393 DATGBK010000000
VERSION     DATGBK010001393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201850"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..106)
                     /locus_tag="VKJ77_19460"
     CDS             complement(<1..106)
                     /locus_tag="VKJ77_19460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011795731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HMC47504.1"
                     /translation="MKEGIHPNYREVLFVDMSNDFKFITRSTINTRETG"
     gene            complement(311..1144)
                     /locus_tag="VKJ77_19465"
     CDS             complement(311..1144)
                     /locus_tag="VKJ77_19465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M90 family metallopeptidase"
                     /protein_id="HMC47505.1"
                     /translation="MANFLTRLISGNRRDRALRKHAIDDTLWQNTLDRLPFFGHLDDA
                     ERARLRECTTLFIAEKEFSTAHDLMLTDAMIVAIAAQACLPVLNLSLELYRGWVGVIV
                     YPGEFVIRKTVEDEAGVVHEIEQDASGEAWEGGPVVLSWEDAQMTDGEDAYNVVIHEF
                     AHKIDMLNGEADGHPPLFRRWHAPLDSNAWNDVFDHAYDHFCAQVDSVPARRWGRFER
                     ESLIDPYAADHPSEFFAVCSEALFVQPVAFEQEYPELYRLLARYYRQDPAGVGALAAP
                     G"
     gene            complement(1180..>2516)
                     /locus_tag="VKJ77_19470"
     CDS             complement(1180..>2516)
                     /locus_tag="VKJ77_19470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47506.1"
                     /translation="QQWWVDRLGHRRYVAGCMLLYACGAMLSALTETSLQLMFTRGLQ
                     GYFIGPMMGACRILIQVSFTPQKRAGATRAFLILIVGSSAVAPLLGGWLVSHFDWRAL
                     FACTAPAGLAFAVLAMLALPDSGNVVREERGATSFWPYLLFAFAQGALQIVMQQVRFV
                     HFSTSPALVLLTVAGIGALAWFAWHQWHHPAPLVRLHALRERSFQVGLLLYMFYYFES
                     TGFSYLISRFLEQGLGYPVENTGRLVGVTSLISGSALFLYFRYTKYVPRKKWIIVPGF
                     AIAALVGWLMTRMSPDVAQSDLILPMLLRGLLLLFIVLPVANLTFRIFEIEEFTHGYR
                     LKNIVRQLTLSFATAAVIIVEQHREALHQSRLAEAVNPYNPEFQNAANALANGFAAAG
                     HSTVDAHALAIATIARTVTQQASFLASLDGFYFLMGVAICGGVFALWQKQID"
BASE COUNT          529 a          771 c          748 g          468 t
ORIGIN      
        1 cgccggtttc gcgcgtgttg atggtcgaac gtgtgatgaa cttgaagtca ttcgacatgt
       61 cgacgaacag cacttcgcgg taattcgggt gaatgccttc tttcatggtc tttccttggt
      121 atctgttggt agccagccca cccggtttgc ggggtttgcg cgtgtttgca agcctatctt
      181 gcaagccgat gctgcgagcg cgagccactt gcctgaggtc gaaaaacgtg gattatgcca
      241 gaaaatcagc cgtttggcat gttttcaggg cgcccgggtt gaccggccgg gctcgttccg
      301 gagttcatct ttaccctggc gcggccagcg cccccacgcc cgccgggtcc tgccggtaat
      361 accgcgcgag caagcgatac aactccggat attcctgctc aaatgctact ggctgcacga
      421 acagcgcctc gctgcagacc gcgaaaaact ccgacggatg gtcggcggcg tagggatcga
      481 tcagcgattc gcgctcgaac cggccccatc ggcgcgcggg gaccgagtct acctgagcgc
      541 agaaatgatc gtaggcgtga tcgaatacgt cgttccaggc gttggaatcg agcggcgcgt
      601 gccaacggcg gaacaggggt ggatggccat ccgcctcgcc attcagcatg tcgatcttgt
      661 gcgcaaactc gtggatgacg acgttgtagg cgtcctcgcc gtcggtcatc tgcgcgtctt
      721 cccacgacag cacgaccggg ccgccttccc aagcctcgcc gctcgcatct tgttcaatct
      781 cgtgcaccac gccagcctcg tcttcgaccg tcttgcggat cacgaattct cccggataca
      841 caatcacgcc gacccagccg cggtacaact ccaggctcag attcagcacg ggcaagcagg
      901 cctgcgctgc gatggcgacg atcatcgcgt cggtgagcat caggtcgtgg gcggtcgaaa
      961 attccttttc cgcgataaaa agcgtcgtac attcgcgcag gcgggcgcgt tcggcatcat
     1021 ctagatggcc gaaaaacggc aggcgatcga gcgtgttttg ccagagcgtg tcgtcgatgg
     1081 cgtgtttgcg cagcgcccgg tcacgacggt tcccgctgat cagccgggtc aggaaattgg
     1141 ccatgaggtc tgtattgttc tcttgatgtt ttctcgcgct caatcgatct gtttttgcca
     1201 gagggcgaac acgccgccgc aaatcgccac gcccatcagg aaataaaaac cgtcaagcga
     1261 agcgaggaaa ctcgcctgtt gcgtgaccgt gcgggcgatg gttgcaatag cgagcgcgtg
     1321 ggcatcgacg gttgaatggc ctgccgccgc gaagccattc gccagcgcat tcgcagcgtt
     1381 ctgaaactcc ggattgtacg gattcacggc ttcggcgagg cgcgactgat gcagcgcttc
     1441 ccgatgctgt tcgacgatta tcactgcggc cgtcgcaaat gagagcgtca actgtcgcac
     1501 gatattcttc aaccggtagc cgtgcgtaaa ctcctcgatc tcgaaaatcc tgaacgtaag
     1561 gttcgcgacg ggcaacacga tgaaaagcaa caacaatcca cgcagcagca tgggcaggat
     1621 cagatcgctt tgggccacgt ccggcgacat tcgcgtcatc agccacccga ccagcgccgc
     1681 aatcgcaaaa cccggcacga tgatccactt ttttcgcggc acatacttcg tgtacctgaa
     1741 atacaggaac agggcggaac ccgagatcag cgatgtgaca ccgaccagcc ggcccgtgtt
     1801 ctcgaccgga taaccgagtc cctgttcgag gaatcgtgag atcaggtagc tgaaccccgt
     1861 cgactcgaag taatagaaca tgtacagcag gagaccgacc tgaaacgagc gttcgcgcag
     1921 cgcgtgaagg cgcacgagcg gtgcagggtg atgccattga tgccacgcaa accaggcgag
     1981 ggcgccaata cccgccaccg tcaggagtac gagcgcgggc gacgtgctga agtgcacgaa
     2041 gcgcacttgt tgcatcacga tctgcagcgc gccctgcgca aatgcaaaca atagatacgg
     2101 ccagaaactc gtcgcgccac gttcctcccg caccacgttg cccgaatcag gtagtgcgag
     2161 catggccagg acggcgaatg cgagccctgc gggcgcggtg caggcgaaca gcgcacgcca
     2221 gtcgaagtgc gacaccagcc agccgcccag caagggcgca accgcgctgc tgcccacaat
     2281 caggatcagg aacgcccgcg ttgcgccggc gcgtttttgc ggcgtaaagc tcacctggat
     2341 caggatgcgg caggcgccca tcatcggacc gatgaagtag ccttgcaaac cgcgcgtgaa
     2401 catcagttgc agcgaggttt cggtgagcgc cgacagcatc gcgccgcacg catacagcag
     2461 catgcagccg gccacataac gccggtgccc gaggcggtcc acccaccatt gctgct
//
LOCUS       DATGBK010001394         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_317146, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001394 DATGBK010000000
VERSION     DATGBK010001394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317146"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1631)
                     /gene="typA"
                     /locus_tag="VKJ77_19475"
     CDS             complement(<1..1631)
                     /gene="typA"
                     /locus_tag="VKJ77_19475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HMC47507.1"
                     /translation="MTRALRNIAIIAHVDHGKTTLVDQLLRQTATFRENQAVVERVMD
                     SNDIEKERGITILSKNCAVEYEGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAV
                     EGPMPQTRFVTKKALALGLKPIVVINKVDRPGARIDWVINQTFDLFDKLGATEEQLDF
                     PIVYASGLNGYAGLNPDVREGDMRPLFDAVLEHVPVRPADPEAPLQLQITSLDFSSYV
                     GRIGIGRITRGRIKPGMAVAVRTGPDGAILNRKINQVLSFKGLERVQVEEAEAGDIVL
                     INGIEEIGIGVTICAVDTPEALPMITVDEPTLTMNFLVNSSPLAGREGKFVTSRQIRD
                     RLFKELNHNVALRVNETGDETTFEVMGRGELHLTILVENMRREGYELAVSRPRVVMTE
                     VDGVKHEPYENLTVDMEDANQGGVMEELGRRKGEMLDMASDGRGRTRLEYRISARGLI
                     GFQSEFLTLTRGTGLMSHTFDSYQPVREGGVGERRNGVLISQDDGAAVAYALWKLQDR
                     GRMFVSPGDALYEGMIIGIHSRDNDLVVNPIKGKQ"
BASE COUNT          402 a          643 c          581 g          412 t
ORIGIN      
        1 aactgcttgc ccttgatcgg gttcacgacc aggtcgttgt cacggctgtg aatgccgatg
       61 atcatgcctt cgtacagtgc gtcacccggc gacacgaaca tgcggccgcg atcctgcaac
      121 ttccacaatg catacgcgac agccgcgccg tcgtcctgcg aaatcagcac gccgttacga
      181 cgttcgccga ctccgccttc ccgcaccggc tgatacgaat cgaacgtgtg gctcatcagt
      241 cccgtgccgc gcgtgagcgt caggaattcc gactggaagc cgatcaggcc acgtgccgaa
      301 atacgatact cgagacgcgt acggccgcgg ccgtccgacg ccatgtcgag catttcgccc
      361 ttgcggcgac ccagctcttc catcacgccg ccctggtttg catcttccat gtcgacggtc
      421 aggttttcgt acggctcgtg cttcacgccg tcgacttccg tcatcaccac acgcggacgc
      481 gacaccgcga gttcgtaacc ttcacgacgc atgttttcca cgagaatggt caggtgcagt
      541 tcgccacggc ccatcacttc gaacgtggtt tcgtcgccgg tttcattcac gcgcaacgcc
      601 acgttgtggt tcagttcctt gaacaggcgg tcacggatct gacgactcgt gacgaacttg
      661 ccttcacggc cggccagcgg cgacgagttc accaggaagt tcatggtcag cgtgggttcg
      721 tccacggtga tcatgggcag cgcttccggg gtgtcaaccg cgcaaatggt cacgccgatg
      781 ccaatttcct cgataccgtt gatcagcacg atgtcgccgg cttcggcctc ttcgacctgc
      841 acgcgctcca ggcccttgaa cgacagaacc tgattgatct tgcggttcag gatcgcgccg
      901 tcaggacccg tacgcacggc gacagccatg cccggcttga tgcggccgcg cgtgatccgg
      961 ccaatgccga tgcggccgac atacgacgaa aagtcgagcg acgtgatctg aagctgcaac
     1021 ggcgcttccg gatcggccgg gcgaaccgga acgtgttcca gcacggcgtc gaacagcgga
     1081 cgcatgtcgc cttcgcgcac gtccgggttc agtccggcat aaccgttcag gcccgatgcg
     1141 tagacgatcg ggaaatcgag ttgttcttcg gtggcgccca gcttgtcgaa caggtcgaac
     1201 gtctggttga tcacccagtc gatccgcgcg cccggccggt cgaccttgtt gatcaccaca
     1261 ataggcttga gtccgagcgc cagcgccttc ttcgtcacga agcgcgtttg cggcatcggg
     1321 ccttcaacgg cgtccaccag cagcaaaacg gagtcgacca tcgacagtac gcgctccact
     1381 tcgccgccga agtcggcgtg tccgggggtg tcgacgatgt tgatgtgcgt gccttcatac
     1441 tcgaccgcgc agttcttcga aaggatcgta atgccacgtt ccttttcgat gtcgttcgag
     1501 tccatcacgc gctcgaccac agcttggttc tctcggaacg tggccgtctg gcggagcaat
     1561 tggtcgacga gcgtagtctt gccgtggtcg acgtgggcga tgatggcgat attgcggagg
     1621 gcgcgagtca taggaggctg aggagcttgt acatacagtt gagcgccgtg ggtgggtgca
     1681 agcagcaggc catggaatca actcagaaag aaatctccac gccccccgca ctcggcgcga
     1741 tgggaacccc agagtgtaac acgccgacgt gtcctcttcc gccccatcgt gcaataggac
     1801 ataacccgga accggtttcc tatttcagga cagccgaaaa ccggcgtcaa cgcctgccgt
     1861 caggcctcac cgggcctcgc gcaaatctca aaataacaac accccgtggc agcgggtatc
     1921 gaattaagaa gattcttaac atgtcggccg aagtacttgc cgcgtcaact atgtgattct
     1981 ataatgttgc atagtcaatt attgcaagcg cacgagaatc catgagcgac gcccccca
//
LOCUS       DATGBK010001395         1557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_271523, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001395 DATGBK010000000
VERSION     DATGBK010001395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271523"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..576)
                     /locus_tag="VKJ77_19480"
     CDS             complement(<1..576)
                     /locus_tag="VKJ77_19480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HMC47508.1"
                     /translation="MLLTIRHHTSYRYAVPVQYSIQQLRMTPANGSAQMVRRWNIDTV
                     GKLDVTRDAYANTLHTLVLTKPHMEIHLSVTGQVETTLLDGGRLNDGPGRIPLQHYTC
                     ATALTEPDAVIRELANSVPKLDSPSALIALAENIEARVQFKAGVTEVTSTAAQALQLG
                     NGVCQDHAHIMLACCRARGLPARYVSGYIDPG"
     gene            complement(611..>1557)
                     /locus_tag="VKJ77_19485"
     CDS             complement(611..>1557)
                     /locus_tag="VKJ77_19485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-E domain-containing protein"
                     /protein_id="HMC47509.1"
                     /translation="RTADHLFWMARYMERAENTARMLDINLKGMLLPQTPDQAARAQR
                     SVLRISELESRFEERFPGSDSREDMLHFMVADTGNPSSIISCLHAARENARAVRGTLT
                     TEAWETINFTWLEFGEKLAADELEKSPDMLFEWVKYRSNLCRGVMVGTALQDDAFWFI
                     QLGMYLERADNTARILDVRFADAEPNSREAARQLEDFYYWTSILSSVSALEIYRKVYR
                     DVVTPSRVVELLILNSQMPRSLLASLDGVCATLDKLRTSGSNECERFAGKLRADVLYM
                     DIRQILETGVHAYLTQFLKRVDELGVRVMRTFLMLPLA"
BASE COUNT          299 a          467 c          494 g          297 t
ORIGIN      
        1 gccaggatcg atgtaaccgc tcacatagcg cgccggcaga ccgcgggcgc ggcagcacgc
       61 caacatgatg tgagcgtgat cctggcacac gccgttaccg agttgcagcg cctgagccgc
      121 cgtgctcgta acctcggtga cgcccgcctt gaactgcacc ctggcttcga tgttctccgc
      181 cagcgcaatc agcgccgacg gtgaatcgag cttgggcacc gagttcgcga gttcgcggat
      241 cactgcgtcc ggctcggtca gcgcggtcgc acaggtgtag tgctggagcg gaatccggcc
      301 gggaccgtcg ttgaggcggc cgccgtcgag caacgtggtt tccacctgac cggttacgga
      361 aagatggatc tccatatgag gtttcgtcag caccagcgta tgcagcgtgt tggcgtaggc
      421 gtcgcgggtg acgtcgagtt tgcccacggt atcgatattc cagcgccgca ccatctgcgc
      481 cgacccgttg gcgggcgtca tgcgcagctg ctggatggag tactgcacgg gcaccgcgta
      541 acggtagctt gtgtgatgac gaatggtcag aagcatgatg gtttccagga cggatgcggg
      601 acggacgcgt tcaggcgaga ggcaacatga ggaaggtgcg catcacgcga acaccgagct
      661 catcgacccg tttcaggaat tgcgtcagat aggcgtgcac tccggtttcg agaatctggc
      721 ggatatccat gtacagcacg tccgcgcgca acttgccggc gaaacgttca cactcgttcg
      781 agccgctggt gcgcagcttg tcgagcgtcg cgcagacccc atccagcgac gccagcagcg
      841 agcgcggcat ctgcgagttg aggataagca gctccactac ccgcgatggc gtcacgacat
      901 cgcgatacac cttccggtag atttccagcg cggacaccga actcaagatg gaggtccagt
      961 agtagaaatc ttccagttga cgcgcggctt cacgcgagtt cggttccgca tcggcgaaac
     1021 gcacatccag gattcgcgcc gtgttgtccg cgcgttccag atacatgccg agctggatga
     1081 accagaaggc gtcgtcctga agcgcggtac cgaccatcac gccgcgacac agattcgagc
     1141 ggtacttgac ccattcgaac agcatgtccg ggcttttttc gagctcgtcc gcggcgagtt
     1201 tttcgccgaa ttcaagccac gtgaaattga tggtctccca cgcttccgtg gtcagggtcc
     1261 cgcgcacggc acgcgcgttt tcgcgggccg cgtgcaggca ggaaatgatg ctcgacggat
     1321 tgccggtatc ggcgaccatg aagtgcagca tgtcctcgcg cgaatccgag cccgggaaac
     1381 gctcctcgaa cctggattcg agttccgaaa tacgcagtac cgagcgttgt gcgcgggcgg
     1441 cctgatccgg cgtctgaggc agcagcatgc ccttcaggtt gatgtcgagc atgcgggcgg
     1501 tattttccgc tcgctccatg tagcgagcca tccagaaaag gtgatcggct gtgcggc
//
LOCUS       DATGBK010001396         2489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_16102, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001396 DATGBK010000000
VERSION     DATGBK010001396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16102"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(232..1431)
                     /locus_tag="VKJ77_19490"
     CDS             complement(232..1431)
                     /locus_tag="VKJ77_19490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HMC47510.1"
                     /translation="MDIYSRFALRPVVNVSGTMTSLGASIVAAPVIEAMAAILPQFVE
                     IDDLQRKASAVIAQACGSESGYITASCSAAITLGVAATMTGDDPGLIERLPDTSGLRN
                     EVVVQTGHLVNYGAPIDQAIRLAGARVVPVGAATESHGYQLSAAISERTTAALYVVSH
                     HTVQFGLIHVEEFIAIAHAKGVPVIVDAASEYDLTRFIAAGADLVLYSAHKFLGGPTA
                     GIVAGKKTLVRAAYFQNGGIGRGMKVGKEGIAGAIAALEQWRQRDHEAVRARERTYLE
                     LWREALNVRPGVRAEIDADPTGNPLDRLKLSIDSREARISAWDLADALAHPAAGSVPV
                     IVRDHEAELNFFFIDPCNLHPGQEHSVLERLLDELERAQHAPHPLVTPFFQRDARRGA
                     GRRNWPD"
     gene            1546..2415
                     /locus_tag="VKJ77_19495"
     CDS             1546..2415
                     /locus_tag="VKJ77_19495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC47511.1"
                     /translation="MAAKPRQTTQEPPSHEQPVPDTADLPAAPPATRTRTSAIDRAVQ
                     ILDALQDTNRPITAYEIARLVGAPLSTVYSIINDLVEKNLLARTPEGAIWLGSRLYGY
                     GLTYASSLDYLAVAHEEMNRLSAQVGETVQVCGLEEGMMVVLQMAEGPGHFRVTSRVG
                     SRVPLNWTASGRLLVGHLPDAERIAYFERYAKSSPTARAETRPNVLARMAREALDARL
                     SIQIGESDASVACLAAPVLDQTGDCVFTISIVMPEAKALQSTERFGDELKVVAARIEA
                     RLGWQRRTPDAIG"
BASE COUNT          487 a          747 c          781 g          474 t
ORIGIN      
        1 acgctgcttt gggcgaaagc ggcttgcgca acgcttccgg tcacggcgac ggccacggcc
       61 gtgcgaagga tctgcttatg catctggttt cctctggtcg aaagaagggc gtccatcgat
      121 gaatttttgt tgtcttcgat ggattaagga ttactaaacg tgcaaggcaa agcgacgccg
      181 gaaaaatccg gcgtatcggt catacaagaa aatcagatcc agtcgcgccc gtcagtcggg
      241 ccaattccgc cggccggcgc cacgccgcgc atcgcgctgg aaaaacgggg tgaccagcgg
      301 atgcggcgcg tgctgcgcac gctctagttc atcgagcagg cgttcaagca cgctgtgctc
      361 ctggccggga tgcagattgc atgggtcgat gaagaagaaa ttcagttcgg cctcgtgatc
      421 gcggacgatc accggcacgc tgcccgccgc cggatgggcg agggcgtcgg ccaggtccca
      481 ggcgctgata cgcgcctcgc gggaatcgat ggacagcttc aggcgatcga gcggattgcc
      541 ggtcggatcg gcgtctatct ccgcgcgcac acccgggcgg acgttcaacg cttcacgcca
      601 caactcaaga taagtgcgct cacgggcacg caccgcttca tggtcgcgct gccgccattg
      661 ctcgagcgcg gcgatggcgc cggcaatgcc ttccttgccc actttcatgc cacggccaat
      721 gccgccattc tggaaatagg cggcacgtac cagcgttttc ttgccggcga caatacctgc
      781 ggtcggaccg ccgagaaact tgtgcgccga atacagcacg agatcggcgc ccgcggcaat
      841 gaagcgcgtg aggtcatatt cggacgccgc atccacgatt accggtacac ccttcgcatg
      901 cgcgatggcg atgaattctt cgacatggat cagtccgaac tgcaccgtgt gatgcgagac
      961 tacatagagc gccgcggtcg tgcgctcgct aatcgcagcg gatagctggt aaccatgcga
     1021 ctccgtggcc gctcccaccg gcacgacgcg agcgccggcg agtcggatgg cttggtcgat
     1081 gggtgcgcca taattgacga ggtggcccgt ttgcacgacg acttcgttgc gcagtccgct
     1141 tgtatcgggc aaacgctcga tcagcccagg atcgtcgccg gtcatggttg cagcaacgcc
     1201 gagcgtgatc gccgccgaac aggacgctgt gatatagccg ctttcgctgc cgcaagcctg
     1261 cgcgatcacg gccgatgcct tgcgttgcaa gtcgtcgatc tcgacgaact gaggaaggat
     1321 ggccgccatt gcttcaatga cgggcgctgc cacgatggac gcacccaggc tcgtcatcgt
     1381 gcccgacaca ttgacgaccg ggcgtagagc aaatcgggaa taaatatcca tcgtgcggct
     1441 cctggtattc ctttattatg gaatgtatgt tgtaattgtg tattagatta tcatacgatg
     1501 cgcttgcgtc aaactgtaca aaaacaatca gtctccagga gcgcgatggc cgccaagccc
     1561 cgtcaaacca cgcaggaacc gccgtcccac gagcagccgg tgccagacac ggccgatctt
     1621 cccgcggccc cgccagctac gcgcacgcgt acgagcgcga tcgatcgggc cgtgcagatc
     1681 cttgatgcgt tgcaggacac caaccgtccg atcaccgcgt acgagatcgc gcgtctggtc
     1741 ggtgcgccgc tgtcgacggt ctattcgatc atcaatgacc tggtggagaa gaacctgctg
     1801 gcccgcacgc ccgagggcgc aatctggctt ggctcgcggc tctacggcta tgggctgacg
     1861 tatgccagtt cgctcgacta tctcgcggtc gcgcacgagg agatgaaccg gttgtcggcc
     1921 caggtcggtg agacggtgca agtgtgcgga ctcgaagaag ggatgatggt cgtgttgcaa
     1981 atggcggagg ggcctggcca ttttcgcgtg acttcgcgtg tgggaagccg cgtgccgctc
     2041 aactggactg cgtccgggcg gttgctggtg ggacatttgc cggacgccga gcggatcgcc
     2101 tatttcgaac ggtacgcgaa gtcgtcgccc accgcgcgtg ccgaaacgcg tcccaatgtg
     2161 ctcgcacgaa tggcgcgtga agcgctggac gcacgcctgt caatccagat cggggaatcg
     2221 gatgcgtccg tggcgtgtct cgccgcaccg gtgctcgacc agactgggga ctgcgtcttc
     2281 actatttcaa tcgtgatgcc ggaagccaag gcgcttcaga gtactgaacg tttcggcgat
     2341 gaactgaaag tcgtcgccgc gcgcattgaa gcgcggctcg gctggcaacg gcgcacgcct
     2401 gacgccatcg gctaggcgaa gggcttgccg gccggtatga atcttgtcct caacacttga
     2461 aagagaacca acgcaacatg ggattttcg
//
LOCUS       DATGBK010001397         3746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_109090, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001397 DATGBK010000000
VERSION     DATGBK010001397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109090"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..295)
                     /locus_tag="VKJ77_19500"
     CDS             complement(<1..295)
                     /locus_tag="VKJ77_19500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013337937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HMC47512.1"
                     /translation="MDANLFARMQRLGRALMLPIAVLPVAGLLLRLGQPDVFNIKMIA
                     DAGDTIFSNLPLLFAIGVAVGFAKDNNGTAGLAGAIGYLIEIAVMKDINDKLNM"
     gene            complement(414..3005)
                     /gene="ptsP"
                     /locus_tag="VKJ77_19505"
     CDS             complement(414..3005)
                     /gene="ptsP"
                     /locus_tag="VKJ77_19505"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011546260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HMC47513.1"
                     /translation="MRRAEESLLNHSPENPNDFVLLAPFTGPMVPLADVPDPVFADGM
                     FGDGIGIDPLSGVLLSPCDGVITHLARTHHAVTLRTPQGAEILVHIGIDTVELGGKGF
                     TPKVEQGTSVRAGQVLIEFDADYVAQNAPSLVSVIAVANSDAFEVVDRAGRGMLKAGE
                     SQLLVLRSKGGAKADAARSDSNFTDEARRNVTLGHAGGLHARPAARAREAARGFDAKV
                     EVRFNGRKAPIESVVGLLGLGAGEGATIELLGVGAQAAAAVEAVAAELLREAHGEVEE
                     KPARTQSPAPVAVSREPGKPLDPNTIAGVCASPGIAVGKLVRWDNNDIEPPEQATGAT
                     AAESHLLDKAIATIDAELGETVRTASQRGAVGEAGIFAVHRVLLEDPTLLDAARDLIS
                     LGKSAGFAWREAIRAQIVLLSNVEDALLAERAADLRDIEKRVLRALGYTNTAARELPD
                     EAVLAADEFTPSDLSSLDRTRVTALLMARGGATSHAAIIARQSGIPAMVAVGDALYAI
                     PDGTQVVVDASAGRLEYAPTALDVERARLERQRLAGVREVNRRTSQEAATTHDGRTIE
                     VAANIATLDDAKTAVDNGADAVGLLRTELLFIHRQTAPTADEHKESYQSIVGALNGRT
                     AIIRTLDVGADKEVDYLTLPPETNPALGLRGIRLAQVRPDLLDDQLRGLLAVKPFGTV
                     RILLPMVTDSGELVRLRKRIDELAAEIGRTDPIQVGVMIEVPSAALLADQLAQHADFL
                     SIGTNDLTQYTLAMDRCQADLAAQADGLHPAVLRLIKQATDGAAKHGKWVGVCGALAG
                     DPVAVPLLVGLGVTELSVDPVSVPGIKALVRKLDYPLCRQRAEDALALESAQAVRAAS
                     REIWPLD"
     gene            complement(3020..>3746)
                     /locus_tag="VKJ77_19510"
     CDS             complement(3020..>3746)
                     /locus_tag="VKJ77_19510"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006024455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HMC47514.1"
                     /translation="SPDLVGTMQALRAAGALTVAAVNVPGSPLAEACEWSLPLLAGPE
                     LSVAATKSYIAMLSLSAIVIAHVQKDLELLNALKTLPDALRAAGKLDWSHAVDELKNV
                     DRMIVIGRGLGLAIAQEAALKLKETSGIQAEAFSSAEVRHGPMELIGADYPLLVFAPR
                     GPEQAGLIQLARDMRARGARVLLAAPADVPEATLPLVETAHFALDPIAAILSFYVMAD
                     ALAAARGRNPDAPRHLAKVTETR"
BASE COUNT          697 a         1207 c         1155 g          687 t
ORIGIN      
        1 ccatgttgag cttgtcgttg atgtccttca tcaccgcgat ttcgatcagg taaccgatcg
       61 cgccagccag accggccgtc ccgttgttgt ccttcgcaaa accaaccgcc acgccgatgg
      121 cgaacaagag tggcaggttt gaaaagatcg tatcgccagc gtcagcgatc atcttgatgt
      181 tgaagacatc cggctggccg aggcgcaata gcagcccggc caccggtaga acggcaatcg
      241 gcagcatcag cgcgcggccg agacgctgca ttcttgcaaa caggttagcg tccatcaggt
      301 tctccagaga taagtgtctt gtcgttgatc gtgttggtac aacatgttgt cgatcgaagc
      361 tttttttact aataaacgag ataaacgcga aggccggctg ccggacggac gtgttagtcc
      421 agcggccaga tttcgcggct tgctgctctt actgcctgtg ctgattcgag cgccaaggcg
      481 tcctcagcgc gctgacggca cagtgggtaa tcgagtttgc gcacgagcgc cttgatgccg
      541 ggaaccgaaa ccgggtccac cgataattcc gtcacgccaa gtcccacgag caagggcacg
      601 gcgaccgggt cgccggccag cgcgccgcag acaccgaccc atttgccgtg tttggccgcg
      661 ccgtctgtcg cttgcttgat gaggcgcagc acggcgggat gcaaaccgtc ggcctgggcc
      721 gcgagatcgg cctggcaacg gtccatcgcg agcgtgtatt gcgtgagatc gtttgtgccg
      781 atagacagga aatctgcgtg ttgagcaagc tgatcggcca gcagcgcagc cgacggcact
      841 tcgatcatca cacccacttg aataggatcg gtccggccaa tttccgccgc gagttcatcg
      901 atgcgctttc tcaagcgcac gagttcgccg gagtcggtga ccataggcag gagaatacgc
      961 accgtgccga acggcttcac cgcgagcaga ccacgcaact ggtcgtcgag gagatcgggg
     1021 cgcacctgcg ccaggcgaat gccgcgcaag cccagcgccg ggttcgtttc aggcggcagc
     1081 gtgaggtaat cgacttcctt gtccgcgccc acgtcgagcg tacggatgat cgccgtgcgc
     1141 ccgttcaacg cacccacgat cgattgatag ctttccttgt gttcgtccgc cgtaggggcc
     1201 gtctggcgat gaatgaacaa caactcggtg cgcaggagac caaccgcgtc cgcgccgtta
     1261 tcgacggcag tctttgcgtc gtcaagtgtc gcgatgttcg ccgcaacttc gatcgtgcgg
     1321 ccgtcgtgtg ttgttgccgc ttcctgtgac gtgcgccggt tcacctcacg cacgcccgcg
     1381 agacgctggc gctcgaggcg cgcgcgttct acgtcgagtg cggtcggtgc atattcaagg
     1441 cggcctgcgg aggcgtcgac cacgacttga gtgccgtcgg gaatcgcgta gagcgcgtcg
     1501 cccaccgcga ccatcgcagg gatgccgctc tgacgcgcga tgatcgccgc gtgagacgtc
     1561 gcgccgccgc gtgccatcaa cagcgcagtg acgcgcgtgc ggtcgagcga cgatagatcg
     1621 gagggcgtga attcatcggc ggcgagaacg gcttcatccg gcaattcgcg cgccgccgtg
     1681 ttcgtataac ccaacgcgcg caacacgcgc ttttcgatat cacgaagatc cgcggcgcgc
     1741 tcagcgagca acgcatcttc gacgttcgac agcaacacga tctgcgcgcg aatcgcttca
     1801 cgccacgcga agccggcgct cttgccgagg ctgatcagat cgcgcgcggc gtcgagcagg
     1861 gtcgggtctt caagcaatac gcgatgcacc gcgaaaattc ccgcctcgcc caccgcaccg
     1921 cgttgcgaag cagtccgcac ggtttcgccg agttccgcgt caatggtcgc aatggccttg
     1981 tccagcaagt ggctttccgc ggccgttgcg cccgttgcct gctcgggcgg ctcgatgtcg
     2041 ttattgtccc agcgcacgag cttgccgacc gcaattcccg gcgacgcaca cacgccggcg
     2101 atcgtattcg gatcgagtgg cttgccgggt tcacgtgaga cagcgaccgg cgcgggcgat
     2161 tgcgtgcgcg ccggtttctc ctccacttcg ccatgcgctt cacgcagcaa ttccgccgcg
     2221 accgcttcca ccgcggcggc cgcttgcgca cctacgccga gcaattcgat cgtcgcgcct
     2281 tcgcctgcgc cgagtccaag caaaccgacc acgctttcaa tcggcgcttt acggccgttg
     2341 aaacgcactt ccaccttggc gtcgaaaccg cgcgccgctt cgcgggcgcg ggccgcgggc
     2401 cgcgcatgca aaccgcctgc atgcccaagc gtcacgttgc ggcgcgcttc gtcggtgaaa
     2461 ttcgagtcgc tgcgggctgc gtccgctttc gcgccgccct tgctgcgcag taccagtaat
     2521 tggctttcgc ccgccttcag catgccgcgg ccggcccggt cgaccacctc gaacgcgtcg
     2581 ctatttgcga ccgcgatcac ggaaacgagg ctcggtgcat tctgcgcgac atagtccgca
     2641 tcgaattcga tcagcacctg gccggcgcgc acgctcgtgc cctgctcgac tttcggtgta
     2701 aaaccttttc cgccaagctc gaccgtatcg ataccgatat gcaccagaat ttccgcacct
     2761 tgtggcgtgc gcaaagtcac ggcgtgatga gtgcgagcaa gatgcgtgat gacgccatcg
     2821 cagggcgaaa gcagcacacc agacagcgga tcgatgccaa taccatcgcc gaacataccg
     2881 tccgcaaaca caggatcggg gacatcggcg agcggcacca tcgggccggt gaacggcgcg
     2941 agcaacacga aatcgttcgg gttttcaggg gaatgattca acagggactc ctcggcacgg
     3001 cgcatcggat gactctcgat taacgggttt cggtgacttt ggccagatgg cgcggcgcgt
     3061 cgggattacg cccgcgcgcg gcagccaggg cgtcggccat cacatagaag gacaggattg
     3121 cagcgatcgg atcgagcgcg aaatgggcag tctcgaccag cggcaacgta gcttcgggaa
     3181 cgtctgcggg cgcggcaagc aatacgcgtg cgccgcgcgc gcgcatatcg cgggcaagct
     3241 ggatcaaacc agcctgttcc ggaccgcgcg gtgcaaacac gagcagcgga tagtccgcgc
     3301 cgataagctc catgggtccg tgccgtactt ccgcgctgga gaacgcctcg gcctggatgc
     3361 ccgatgtttc cttcagcttg agcgccgctt cctgcgcaat cgcgaggccg agaccacggc
     3421 cgatcacgat catgcggtcg acatttttca gttcatcgac agcgtgcgac cagtcgagct
     3481 tacccgccgc gcgcaatgcg tcgggcagcg ttttcagcgc gttgagcaat tcaagatctt
     3541 tctgcacgtg cgcaatcacg atcgccgaaa gcgacaacat cgcgatatag cttttggtcg
     3601 cggccaccga caattccggc ccggccagca gcggcaggct ccattcacat gcttcggcga
     3661 gcggcgaacc gggcacgttg acagcggcaa cggtcagcgc gccggcggca cgcaaagcct
     3721 gcatggtgcc gaccaggtcg gggctc
//
LOCUS       DATGBK010001398         1793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_131937, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001398 DATGBK010000000
VERSION     DATGBK010001398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131937"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1107)
                     /locus_tag="VKJ77_19515"
     CDS             complement(<1..1107)
                     /locus_tag="VKJ77_19515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HMC47515.1"
                     /translation="MPIIKRPNSSNAPRDDRDQDGPNRYRQPTAKSSAGPSIAVRIVL
                     WFVGLFAVAAIIGALIIGYALVVMGPNLPSLDAITDYQPKVPLRIYTADHVLIGEFGE
                     ERRRIARFDEIPDQMKKAVLAIEDYRFYEHGCVDFIGIARAGLSDIMHGGASQGASTI
                     TMQVARNFFLSSEKTYTRKIYEMLLAYKIERALTKDQILELYMNQIYLGERAYGFASA
                     ARVYFGKDLKDLTLAECAMLAGLPKAPSAYNPVVNPKRAKIRQQYILKRMLDLNFISQ
                     AQFDQASAEEIHARVSGTEYSVHAEYVAEMVRQMMYAQYRDETYTRGFSVTTTIDSAD
                     QEAAYNAVRKGVMDYERRHGYRGPEGFVNLPTNED"
BASE COUNT          364 a          516 c          531 g          382 t
ORIGIN      
        1 atcctcgttg gtcggcagat tgacaaagcc ttccggcccg cgatacccgt ggcgccgctc
       61 gtaatccatc acgcccttgc gcacggcgtt ataggccgct tcctgatcgg cggaatcgat
      121 ggtcgtggtc actgaaaagc cacgcgtgta tgtctcatcg cggtattggg cgtacatcat
      181 ctgccggacc atttccgcga catattcggc gtgcacgctg tattccgtgc ccgacacacg
      241 cgcatgtatt tcttcggcgc tggcctggtc gaattgcgct tgcgagatga aattcaggtc
      301 gagcatgcgc ttcaggatgt attgctgacg aatctttgcg cgcttcggat tgacgacggg
      361 gttataagcc gacggtgcct tgggcaagcc cgcgagcatc gcgcattcgg cgagcgtcag
      421 gtccttgagg tctttgccga aatacacccg cgccgccgat gcaaacccat acgcccgctc
      481 gcccagataa atctggttca tgtacagctc gagaatctgg tccttcgtca gcgcgcgctc
      541 gatcttgtag gcgagcagca tttcgtagat cttgcgcgtg taggttttct cgctcgagag
      601 gaagaagtta cgcgcgacct gcatggtgat cgtgctggca ccttgcgacg cgccgccgtg
      661 catgatgtca ctcaaccctg cccgcgcaat accaatgaaa tcgacgcaac cgtgctcgta
      721 gaagcggtaa tcctcgatcg cgaggacggc cttcttcatc tggtcgggga tctcgtcgaa
      781 acgcgcgatg cgccgccgct cctcgccaaa ttcgccgatc agcacgtgat ctgccgtgta
      841 gatccgcaag ggcactttcg gctgatagtc cgtaattgcg tcgagcgagg gcaggttcgg
      901 ccccatcacg accagcgcat aaccaatgat cagcgcgccg atgattgccg cgacggcgaa
      961 cagcccaacg aaccacaaca cgatgcgcac tgcgatcgag ggtccggctg aagacttggc
     1021 ggtgggttga cggtaacgat tgggaccatc ttgatcccgg tcatcgcgtg gggcgttcga
     1081 ggaattcggt cgtttgatga ttggcatgac ttggattgaa cggcgcgccc ctaaggcgcc
     1141 cggtgcgcaa cgccatgaaa ccgcgtaacg ataaatgttg gggtgagcga aagccgtggc
     1201 cagctccgcc gtgtagccga tgtgtagcgc tgcaacctga ccgaaatatg gaagcgctca
     1261 aacaagcgct cgcatgcaaa tcgatccgga ctgccgcgtc gcgtgccatt gcccccggac
     1321 tggctgcgcg ttcccgcgaa tgggccgtta tcgcattgta agaaaaactg caacactggc
     1381 ggccccgcgc agaataacag cgcattttaa agaattcgag cgccgagcac cggcggtgac
     1441 aggatttttt tgtaagtaaa tcccgtgtaa tgggccgtcg tagcaagtat gtccgtcaag
     1501 gcggcctctc tcgacgctat cgcggaggtg gccgtagcac caccatctca atattgcaag
     1561 cagttgatgt gggtagcgtc cgaagcgcgg ttcggggagt gtgtccgcac gcacgagaag
     1621 ttggcaaacc gatatgatgg aaacgttggt tgcgtggttt gccgtaccgc cgagcacgtc
     1681 gaaagcgcat caaatggcgt tgcccgtgtc ggatatcggc cgttcggatt tgcccagccc
     1741 tgcttagcga ggcgctcatg actaccaaac ccagcgaacg catcgttgtt ttt
//
LOCUS       DATGBK010001399         2130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_63034, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001399 DATGBK010000000
VERSION     DATGBK010001399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63034"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            355..1410
                     /locus_tag="VKJ77_19520"
     CDS             355..1410
                     /locus_tag="VKJ77_19520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC47516.1"
                     /translation="MHSTIKDVAAHSGVSIATVSRALNAPQLLNAETLAKVRESIEAL
                     DFMPSARGRQLRGVRTRLVGVVVPTLANPVFAESLQGIDEAASASDYRLMLMTTAYDS
                     ARERRAIETLREQRVDGLIATVADAECNPLLDELDRIGLPYVLVHNDTAYRAAVSVDN
                     RLAARDGVCALLERGHRRILMLAGSFAESDRARLRYRGYEDAMLDAGLTPHAPLELDF
                     NADDLPPSLLAHFSDPARRPTALFCSNDRLAIIVMRGLRHAGLSVPHDISVLGFDGIP
                     LGEWLSTALSSVATPNREIGRCAWLHLAARLGLPGDTTSGPIPFKLPHSVRTGATIAP
                     LIDPAARTASLVSENPA"
     gene            1407..>2130
                     /locus_tag="VKJ77_19525"
     CDS             1407..>2130
                     /locus_tag="VKJ77_19525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014897524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HMC47517.1"
                     /translation="MKIRHVLATLLAATATFCAAGAAYAGNTADSTAICYNCPPEWAD
                     WASQIAAIQKQTGIRVPFDNKNSGQAIAQMMAEQKSPIADVVYLGVSSAFQAKDKGLV
                     QPYKPAHWNDIPAGMKDPNGYWFAIHSGTLGFFVNKDALDGKPVPRSWADLLKPEYKG
                     MVGYLDPSSAFVGYAGAVAVNQALGGTLDNFKPGLDWFAKMKANAPIVPKQTAYARVM
                     SGEIPILLDYDFDAYRAKYKDHA"
BASE COUNT          398 a          632 c          664 g          436 t
ORIGIN      
        1 cctttggggg acgggtgcgg actaggatgc ggactattcc aagacctttc tttcgatccg
       61 agcgcattgg aacttttgcg tatgaaccct aaaagacggt ctgctttcgg tggggttacg
      121 tggatataac aaacagaaag agtcggtaag gtagagcgtt gaagttcggt atgggctggt
      181 ctttcaatgc cgatagcctg agcaatggac cgactgtcgg gtggcaagtt tttttaccgc
      241 atggaaaggg ctgtgcggtt aacccgggat gagtcacgtg ctttcacgcg gacgtcacag
      301 agcgctttga taatcgctgc tgtaaacgtt ttcagtgaat tcttgctact gcccatgcac
      361 tccaccatca aggacgttgc cgcgcattca ggcgtttcta tcgccactgt gtcgcgtgcg
      421 ctcaacgcac cgcaattgct gaatgcggag acgctcgcca aggtgcgcga gtcgatcgaa
      481 gcgctcgact tcatgcccag tgcgcgaggc cgccagcttc gcggcgtacg cacgcggctg
      541 gtcggcgtgg tcgtgccgac actggccaat cccgtcttcg ccgagtcgct gcaaggcatt
      601 gatgaagcgg catccgcgag cgactaccgc ctgatgctga tgaccaccgc gtatgacagc
      661 gcgcgtgagc gccgcgcgat cgagacattg cgcgagcagc gcgtggacgg tctgatcgcg
      721 acggtggccg atgccgaatg caatcccttg ctggacgaac tcgatcgcat cggcttgcct
      781 tatgtgctgg tgcataacga cacggcgtat cgcgcggcgg tatcggtgga taaccggctg
      841 gcagcgcgtg acggcgtgtg tgcgttgttg gagcgcggac atcggcggat cctgatgctg
      901 gcaggttcgt tcgcggaatc ggatcgcgcg cgcttgcggt atcgcggtta cgaagacgcg
      961 atgctcgacg ccggcctcac tccgcatgcg ccgctcgaac tcgatttcaa cgcggacgat
     1021 ctgccgcctt cgctgctcgc tcatttctcg gatcccgctc gccggcccac tgcgcttttc
     1081 tgcagcaacg accgcctggc gatcatcgtg atgcgcggtt tgcggcatgc gggtttgtcc
     1141 gtgccgcacg atatttcagt gctcggtttc gacggcattc cgcttggcga atggttatcg
     1201 acggcgctgt ccagcgttgc cacgccgaac cgcgagattg gccggtgcgc atggcttcat
     1261 ctcgcggccc ggctgggtct gcccggagat acaaccagtg gccccattcc gttcaagttg
     1321 ccccatagcg taagaaccgg cgcgaccatc gcgccattga tcgatcctgc ggccagaacg
     1381 gcctccctcg tatcggagaa tcctgcatga aaatccgtca tgtcctcgcc acgctgctag
     1441 cagcaacggc cacgttttgc gcggccggcg cggcgtatgc tggcaacacc gccgacagca
     1501 ccgcgatctg ctacaactgt ccgccggaat gggccgactg ggcgagccag attgctgcca
     1561 tccagaagca gaccggcatc cgcgtgccgt tcgacaacaa gaactccggc caggctattg
     1621 cgcagatgat ggccgagcaa aagagcccga ttgccgacgt ggtctatctc ggcgtttcat
     1681 cggcgttcca ggcgaaagac aagggcctgg tgcagccgta caaacccgcg cactggaacg
     1741 atatccctgc cggcatgaag gatcccaacg gctactggtt cgcgattcac tcgggcacgc
     1801 tgggcttttt cgtcaacaag gacgcgctcg acggcaagcc ggtaccgcgc tcgtgggcgg
     1861 acttgctgaa gccggaatac aagggcatgg tcggttatct tgatccgtcg tcggcgttcg
     1921 tgggatacgc gggcgcagtg gccgtgaacc aggcgctggg cggcacgctc gataacttca
     1981 aacccggtct cgactggttc gcaaagatga aggccaacgc gccgatcgtg ccgaagcaga
     2041 ccgcgtatgc gcgtgtgatg tcgggcgaga ttccgatcct gctcgactat gacttcgacg
     2101 cgtatcgtgc gaaatacaag gatcacgcga
//
LOCUS       DATGBK010001400         1883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_317235, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001400 DATGBK010000000
VERSION     DATGBK010001400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317235"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..825)
                     /locus_tag="VKJ77_19530"
     CDS             complement(<1..825)
                     /locus_tag="VKJ77_19530"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008718 - D-amino-acid dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0055130 - D-alanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HMC47518.1"
                     /translation="MRVVILGSGVVGVTSAYYLARAGHEVTVIDREAGPALETSFANA
                     GQISPGYASPWAAPGVPLKAMKWMFEKHAPLAIRLDGTSFQLKWMWQMLQNCTQARYS
                     VNKGRMVRLAEYSRDCLQALRSDTGINYEGRTGGTLQVFRTQQQLDGAAKDIAVLRDA
                     NVPFELLTPAELQNAEPALAAVSHKLTGGLRLPNDETGDCQKFTTRLAAMAEQLGVKF
                     RYNTPIDALAVSGGRIAGVQCGGETIRGDSYVVALGSYSTKLLGSLVDIPVYPLKGY"
     gene            975..1463
                     /locus_tag="VKJ77_19535"
     CDS             975..1463
                     /locus_tag="VKJ77_19535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HMC47519.1"
                     /translation="MRTQRNSVRELDKIDRRILKILQQDGRMAMKDLAEQVGLSVTPC
                     IERVKRMERDQVIAGYYARVNPHQLGASLLVFVEITLDHKSGNMFEQFRREVQRIPEV
                     LECHLVSGDFDYLIKARIGEMADYRKLLGDILLQLPGAVQSKSYVVMEEIKETLTIAV
                     DA"
     gene            1532..>1883
                     /locus_tag="VKJ77_19540"
     CDS             1532..>1883
                     /locus_tag="VKJ77_19540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HMC47520.1"
                     /translation="MASHDHEYPVAPPAPLKGRGAVTNMQGRYEKDERERVDDGWTHV
                     SEEGEADEAPVVRTQVFEERAKSILTRNSSPDIPFGVSLNPYRGCEHGCIYCFARPTH
                     SYLGLSPGLDFESRI"
BASE COUNT          382 a          526 c          568 g          407 t
ORIGIN      
        1 ataaccctta agcggataaa cggggatatc gacgagactg cccagcagtt tcgtggagta
       61 agacccgagc gcgacaacgt atgaatcacc gcgaatggtc tctccaccgc actgaacgcc
      121 ggcgattcgg ccgccgctca ccgcgagcgc gtcgattggc gtgttgtagc ggaacttgac
      181 gccgagctgt tcggccatgg cggcgaggcg ggtcgtgaat ttctggcaat caccagtttc
      241 gtcgttcggc aaacgcagac cgccggtcag cttgtgcgac acggcggcaa gcgccggttc
      301 cgcgttttgc aactcagccg gcgtgagcaa ttcgaacggc acgttcgcat cgcgcaacac
      361 ggcgatgtcc tttgcggcgc catcgagttg ttgctgggtc cggaaaactt gcagcgtgcc
      421 gccggtgcgg ccttcgtaat tgatgcctgt gtccgagcgc agtgcctgca ggcaatcgcg
      481 gctgtattcg gccaggcgca ccatgcgacc cttgttgacg gaatagcgcg cctgcgtgca
      541 gttctgcagc atctgccaca tccacttcaa ttgaaacgat gttccgtcca gacggatagc
      601 gagaggcgcg tgtttctcga acatccattt cattgctttc agcggcacac caggcgcggc
      661 ccacggcgat gcgtaaccgg gcgagatctg ccctgcgttc gcgaaactcg tctcgagcgc
      721 cggtcccgcc tcacgatcga tcacggtcac ttcgtgcccc gcgcgcgcca gatagtaagc
      781 gctcgtgacg ccaacaacac cgcttcccag aattacgact cgcatgcctt gctccgtgca
      841 aagtgtgtcc gccggtcatt tgcttcgttt tgactgaagc cgtgtgagta gcgggttaca
      901 tagtggtatc gactatagta ttgataccaa ggcagttttt gttattgtat ttattcactt
      961 ttcagtggaa agcaatgaga acgcagcgaa attcagtacg agaactcgat aagatcgatc
     1021 gccgcatcct gaagatcctc cagcaggacg gtcgtatggc gatgaaagac ctggccgagc
     1081 aggttgggct ctcggtgacg ccgtgcatcg aacgcgtcaa acgcatggag cgtgaccagg
     1141 tgatcgcggg gtattacgcg agggtgaatc cgcatcagtt gggcgcgtcg ctgctggtat
     1201 tcgtcgagat caccctcgat cacaaaagcg gcaacatgtt cgagcagttc cggcgcgaag
     1261 tgcagcgcat tcccgaagtg ctggaatgcc atctcgtttc cggcgatttc gactatctga
     1321 tcaaggcgcg tattggtgaa atggccgatt accgcaagct gctcggcgac atcctgctgc
     1381 aactgccggg cgccgtgcag tcgaaaagtt acgtggtgat ggaggaaatc aaggaaacgc
     1441 tgactatcgc ggtcgacgcc tgaaatgagc ttgcggccgg ggtaatttac tgtatattta
     1501 tacagtactt tcctgctttc attccccggc catggcttct cacgaccacg aatatcctgt
     1561 tgctcctccc gcgccgctca agggccgagg ggcggtcacg aacatgcagg ggcgctacga
     1621 gaaggacgag cgcgagcgtg tagatgacgg ctggacgcat gtcagcgagg aaggggaggc
     1681 cgatgaggcg ccggtcgtgc gcacgcaagt tttcgaggag cgcgcgaaga gcattctgac
     1741 gcgcaattcg tcgccggata ttccgttcgg ggtgtcactg aacccttacc gtggctgcga
     1801 gcacggttgt atctattgtt tcgcgcggcc cacgcatagt tatttggggt tatcgccggg
     1861 gctcgatttc gaaagccgga tct
//
LOCUS       DATGBK010001401         3360 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_247859, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001401 DATGBK010000000
VERSION     DATGBK010001401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247859"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..522)
                     /locus_tag="VKJ77_19545"
     CDS             complement(<1..522)
                     /locus_tag="VKJ77_19545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47521.1"
                     /translation="MPTSRLSSALPTAPVDSFAATGPAASGGGVAIVRQVLPFARPVA
                     AILFALTCAGVGTAVMAQTPKPINPGTSVTQTPLDETGAQDNGNAAQAASGVPANRAD
                     GVVGASGAIDAGAAQATADTNPFTARQKALDVRSAENNYLYGVKQHDCYSTFFVNHCL
                     DKARDAKREVGQQI"
     gene            758..3118
                     /locus_tag="VKJ77_19550"
     CDS             758..3118
                     /locus_tag="VKJ77_19550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tex family protein"
                     /protein_id="HMC47522.1"
                     /translation="MTETVALKIVQRIATELNVQPRQVAATVQLLDEGATVPFIARYR
                     KEVTDNLDDTQLRNLEERLIYLRELEDRRATIVQSIDEQGKLTPELRAAVESADSKQV
                     LEDLYLPYKPKRRTRAQIAREAGLQPLADALLADPTLDPQTEAARYVDAEKGVADIKA
                     ALDGARDILSEQFGETAEILGKVRDYLFKQGSVISTVVEGKETEEGEKFRDYYDYSET
                     IRTVPSHRALALFRGRNAGVLMVKLGLGEELDAQVPHPGEALIARHVGIANQGRPADK
                     WLSDVCRWCWRVKVQPNIENDLLTNLREEAEAEAIRVFARNLKDLLLAAPAGPKAVIG
                     LDPGMRTGVKVAVVDRTGKLLATDVIYPHEPRRDWDGSLAKLARIAAQTQAELISIGN
                     GTASRETDKLASELIAKHPELKLQKIVVSEAGASIYSASELASKEFPDLDVTLRGAVS
                     IARRLQDPLAELVKIDPKAIGVGQYQHDVNQRDLARSLDAVVEDCVNAVGVDANTASV
                     ALLARVSGLNATLARNIVDFRDANGPFASRDQLKKVPRLGDKTFEQAAGFLRINNGVN
                     PLDRSSVHPEAYPVVERILAKIKKHAADVMGKREALAGLSPAEFVDERFGLPTVRDIL
                     AELEKPGRDPRPEFKTATFRDGVEKLSDLTPGMILEGVVTNVAAFGAFVDIGVHQDGL
                     VHVSAMSTKFIKDPHEVVKAGQVVKVKVLETDVKRQRIALTMRLDDDFAADGAAPAQQ
                     QPRGAQDRRGGSGGGGSARDVRGNSGGKREPEAASAMAAAFAKLKK"
BASE COUNT          726 a          990 c         1033 g          611 t
ORIGIN      
        1 aatctgctgg cctacttcac gcttggcgtc gcgcgctttg tccaggcagt gattgacgaa
       61 gaaagtgctg tagcaatcgt gctgcttgac cccatagaga tagttattct ccgcgctgcg
      121 gacgtccagc gccttctggc gcgcggtgaa aggatttgta tcggcagtgg cttgcgctgc
      181 gccagcatcg attgcgccac ttgcaccgac cacaccatcc gcccgatttg ccggcacgcc
      241 cgatgccgct tgcgcggcat tgccattgtc ttgtgcaccc gtttcgtcga gcggcgtttg
      301 ggtgaccgac gtacccgggt tgatgggctt cggtgtctgc gccatgaccg ccgtgccgac
      361 acccgcacag gttagcgcga acaatattgc cgcaacgggc cgggcgaacg gcaagacctg
      421 ccgcacgatg gcaacaccgc cacccgatgc ggctggaccg gtcgcggcga acgaatcgac
      481 tggagcagtc ggcaaagcgg acgaaaggcg ggaagtcggc aacgtgatag ccagcgtgat
      541 aggcaaggaa acgaacaagg agacggacaa tggtgtgaaa aagcagcttc tacgatcacg
      601 aaattctatc accgcgcgcc ggagccctcc ggcatttatg gcaaaatgcc ccgcttcacc
      661 aacccggcaa acgtgttcgc gcggcttaca gtgaaatgcg agtgaaatgc gcggtacgaa
      721 aagcccttga tgagccagca ggctgacgca gacccccatg acggaaaccg tagcactcaa
      781 gattgtccag cgcatcgcca ccgagttgaa tgtgcagccg cggcaggtcg ccgctaccgt
      841 gcagcttctc gatgaaggcg caacagttcc gttcatcgcc cgttatagaa aggaagtaac
      901 ggacaatctc gacgacacgc aattgcgcaa tctcgaggaa cggctcatct atcttcgcga
      961 gctggaagac cggcgcgcaa cgattgtcca gagcatcgac gaacagggca agctcacacc
     1021 cgagctgcgc gcagccgttg aaagcgccga cagcaagcag gtgctcgaag atctgtatct
     1081 gccctacaaa ccgaagcgcc gcacgcgtgc gcagattgcc cgtgaagccg gcctgcagcc
     1141 gctcgcggat gccctcctcg ccgacccgac gcttgatccg caaacagaag ccgcgcgtta
     1201 cgtggacgct gaaaaaggcg tcgccgatat caaggccgcg ctcgatggcg cccgcgacat
     1261 tctctcggaa cagttcggcg aaacggcgga aattctcggt aaggttcgcg attatctgtt
     1321 caagcaaggc agcgtgattt cgactgttgt ggaagggaaa gaaaccgagg aaggcgaaaa
     1381 attccgcgac tactacgact actcggaaac catccgcacc gtcccgtcgc accgcgcgct
     1441 cgcgcttttt cgcggacgca atgccggcgt attgatggtc aagctgggac tgggcgaaga
     1501 gctcgacgcg caagtgccgc atcccggcga agcgctgatc gcgcgtcacg tgggtatcgc
     1561 gaatcagggc cggccagccg ataaatggct ctcggacgtg tgccgctggt gctggcgcgt
     1621 gaaggttcag ccgaatatcg aaaatgatct gctgacgaat ttgcgcgaag aagccgaagc
     1681 cgaggccatt cgtgtgtttg cacgcaacct caaggatctt ttgcttgccg caccggcagg
     1741 tccgaaagcc gtgatcggcc tcgatcccgg tatgcgtacc ggcgtaaaag tggccgtggt
     1801 cgatcgcacc ggaaagctgc tcgccaccga cgtgatttat ccgcacgagc cacgccgcga
     1861 ctgggacggt tcgcttgcca agctcgcgcg gatcgccgcg cagacgcagg ctgagttgat
     1921 cagtattggc aatggcacgg cgtcgcgtga gaccgacaag ctcgcgagcg aattgatcgc
     1981 gaaacatccg gaactgaagc tgcaaaagat cgtggtgtcc gaagccggag catcgattta
     2041 ttcggcgtcg gaactggcat cgaaagagtt tcctgacctc gacgtcacgc tgcgcggcgc
     2101 ggtatccatc gcgcggcggc tgcaggatcc gctcgccgaa ctcgtcaaga ttgacccgaa
     2161 agcgatcggt gtcggtcagt atcagcacga cgtcaatcaa cgcgacctcg cccgctcgct
     2221 cgatgcggtg gtcgaggatt gcgtgaacgc ggtcggcgtg gatgccaata ccgcatcggt
     2281 tgcactgctt gcgcgcgtgt cgggattgaa tgcgacgctg gcgcgcaata tcgtcgattt
     2341 ccgcgatgcc aacggcccgt ttgcatcgcg tgatcaattg aagaaagtgc cgcgtctagg
     2401 cgacaaaacc ttcgagcaag ccgccggctt cctgcgcatc aacaatggtg tgaatccgct
     2461 ggaccgctcg tcggtgcacc cggaagcgta tccggtggtc gaacggatcc tggccaagat
     2521 caagaaacac gccgccgatg tcatgggcaa gcgtgaagcc ttggcgggct tgtcgccggc
     2581 cgaattcgtc gacgaacgat tcggtctgcc gaccgtgcgc gacatcctcg ctgagctgga
     2641 aaaaccgggc cgcgatccgc gtccagagtt caagactgcc acgttccgcg atggcgtcga
     2701 gaaactctcc gatctcacgc cgggaatgat cctggaaggc gtcgtcacga acgtcgcggc
     2761 gtttggtgca tttgtggata tcggcgtgca tcaggatgga ttggtgcacg tatcggcgat
     2821 gtcgaccaag ttcatcaagg acccgcacga ggtagtgaag gccggtcagg tggtgaaggt
     2881 taaagtgctg gagacggacg tgaagcgcca gcggattgcg ctgaccatgc gtctggacga
     2941 tgacttcgcc gctgatggtg cggcgccggc ccaacaacag ccacgcggtg cgcaagatcg
     3001 tcgtggtggc tcgggtggtg gtggcagtgc ccgcgatgtc cggggcaata gcggcggcaa
     3061 acgtgaaccg gaagcggcca gcgcgatggc tgccgcgttt gccaagttga agaagtaaat
     3121 gagcgacacg cctcgatgaa atagaaaacg gcccattggg ccgttttcta tttaacaaac
     3181 ttgacggatc aagtcgggca acgcgtgcgt catggtctca aacacccccc gcacgctccc
     3241 catcaaatct cgatcttcgt ccctagctcg accacccggt tcgcgggaat actgaagaag
     3301 tcagtcggct tggcggcatt ctgatgcatc catgcgaaca ctcgttcacg ccacaccgac
//
LOCUS       DATGBK010001402         2584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_131957, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001402 DATGBK010000000
VERSION     DATGBK010001402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131957"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..256
                     /locus_tag="VKJ77_19555"
     CDS             <1..256
                     /locus_tag="VKJ77_19555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47523.1"
                     /translation="TVTGAAEGGAYGAVLAAGVGSQWWSSLDEAVGSLRITGRVSPDT
                     TLGPLYQARFNTFRTLYDTLRPVFVQIAAETAAVAPQTTI"
     gene            269..982
                     /locus_tag="VKJ77_19560"
     CDS             269..982
                     /locus_tag="VKJ77_19560"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HMC47524.1"
                     /translation="MTLPDPGLHPGLPIEGIVFDLDGTLVDTAPDITSAVNRLLETHG
                     LPPQPVRFVEKYIGEGSFGLIDKLYKGLGLALEPARVTADVDTYLALYKRHPVEHSTV
                     YADALSAVPALHAAGIKLGVCTNKAQELAEAVLKHFGLAHYFSAIVGGDVLPQRKPDP
                     QHLLTTLEHMNVAPQHALYVGDTQIDADCAQGAHVRCRIVNWGTGPGVAVGTAKRLDS
                     FDELVVTCAAVKASRLPGI"
     gene            993..1838
                     /locus_tag="VKJ77_19565"
     CDS             993..1838
                     /locus_tag="VKJ77_19565"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HMC47525.1"
                     /translation="MRNDLLRRIAVVRPELTGAALRIADVLLSTPEAVLKMSMAELSE
                     AAGTSDPTVVRFFRRFDCADYQDFKVRLAQGLIPQAPFDYEAITLADTPDSVCSKIIN
                     NSLHAIQRFASDVDSASIEQAATRLIEAKGIFLFGLGISETIAFDAEHKFFRLGLHCR
                     VVLDSQKQLLLAPTLRSDEVAVFFSHSGSTKSLVMAAAMAKAKGAVTIAICAPGSRLA
                     QTCDLTIGVPAYENTELYTPLTARINHLLVVNMLVAMLGLRQGRELPDNLAALDPWFT
                     DKFMD"
     gene            1907..>2584
                     /gene="rpiA"
                     /locus_tag="VKJ77_19570"
     CDS             1907..>2584
                     /gene="rpiA"
                     /locus_tag="VKJ77_19570"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF001924.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HMC47526.1"
                     /translation="MSTHIEPGYAHLKPASLQDEAKLASGIKAVDHYLRPGMKVGLGS
                     GTTSHWFVRALAPCVAQGLDIVGVPTSNATRELALELGVPLTDLGQIDQLDVTIDGAD
                     EIDHQGSMIKGGGACLLWEKIVAAASKKMVAVVDDKKIFERLGRFPLPIEVIPFGWQS
                     TERLLRELFVSAGFDKNVRIVTRMRGTEPLLTDSGNWILDCHLEAIPDPLGLAPRFNA
                     IPGVVENG"
BASE COUNT          504 a          786 c          785 g          509 t
ORIGIN      
        1 cacggtgacc ggcgcggccg agggcggcgc gtatggcgcg gtgctcgcgg cgggcgtggg
       61 cagtcaatgg tggtcttcgc tcgatgaagc cgtcggcagc ctgcgtatta ccggacgcgt
      121 aagcccggac accacgcttg gccccttgta tcaggcgcgc ttcaatacct tccgcacgct
      181 gtacgacacg ctgcgtccgg tcttcgtgca gatcgccgcc gagactgcag ccgtcgcccc
      241 gcaaacgact atctgagagc gagcacccat gacactacct gaccccggtc tccatcccgg
      301 cctgcccata gaaggcattg tgttcgacct cgacggaaca ctggtcgata ccgcgccgga
      361 catcacgagc gcggtcaatc gtctgctgga gactcatggc ttgccgccgc aaccggtgcg
      421 tttcgtggaa aagtacattg gcgaagggtc gttcggtttg atcgacaagc tgtacaaagg
      481 gctgggtctt gcactcgaac cggcgcgcgt gacagcggat gtggacacct atctggcact
      541 ctacaaacgc catccggtcg agcattccac cgtctatgcc gacgcgttga gtgccgtgcc
      601 cgcgctgcac gcagcaggca tcaagcttgg cgtctgcacg aacaaggcgc aggaactcgc
      661 ggaggccgtg ctgaaacact tcggccttgc gcactatttc agcgcgatcg tgggcggcga
      721 tgtcctgccg cagagaaagc cggatccgca gcatttattg acgacgctcg agcacatgaa
      781 cgtggcgccc cagcatgcgc tgtacgtggg cgatacgcag atcgacgccg actgcgcaca
      841 aggcgcgcat gtgcgctgcc gtatcgtcaa ctggggaacg gggccgggcg tggccgtggg
      901 aacagcgaag cggctagact ccttcgacga actcgttgtc acctgcgccg ctgtgaaggc
      961 gtcgcgcttg cccggaattt gatgagaatt tgatgagaaa tgacctgtta cgccgcattg
     1021 cagttgtacg ccccgaattg acgggcgcgg cccttcgaat cgccgacgtg ttgctgagca
     1081 cgcccgaggc tgtgctcaag atgagcatgg ctgaattatc ggaggcggcg gggacaagcg
     1141 atcccaccgt cgtgcgcttc ttccggcgct ttgactgcgc agactatcag gacttcaagg
     1201 tgcggctcgc gcaagggctg atcccgcagg cgccgttcga ctacgaagcg atcacactcg
     1261 ccgatacgcc ggacagcgtc tgcagcaaga tcatcaacaa ctcgctgcac gcgatccagc
     1321 gctttgcatc ggatgtcgat tccgcttcta ttgagcaagc cgctacgcgc ctgatcgagg
     1381 ccaaggggat cttcctgttc ggactcggca tctccgagac gatcgctttc gacgccgaac
     1441 acaagttctt ccgcctggga ctgcattgcc gcgtggtgct cgattcgcag aagcaattgc
     1501 tgcttgcgcc cacactgcgc agtgacgaag tcgcggtgtt cttctcacac tcggggtcga
     1561 ccaagtcgct cgtgatggcc gcagccatgg cgaaagccaa gggcgccgtg acgatcgcca
     1621 tctgcgcgcc gggctcacgt ctcgcgcaga cgtgtgacct gaccattggc gtgccggcgt
     1681 acgaaaacac cgagctttac acaccactga ccgcgcgcat caaccatctt ctcgtggtga
     1741 acatgctggt cgccatgctt ggattgcggc aagggcgcga gctgccggac aacctggccg
     1801 cgctcgatcc ctggttcacc gataaattca tggattagcc aacggcttag cagagtcctg
     1861 agtcttgagt cctgacatcc attcatattg cttcaaggag acatctgtga gcacgcatat
     1921 cgaaccgggc tatgcccacc tgaaacctgc gtcgttgcaa gacgaagcca agcttgcatc
     1981 cggcatcaag gcggttgacc actatctgcg gccggggatg aaagtgggtc tcggctccgg
     2041 cacgacctcg cactggttcg tgcgcgcgct ggctccatgc gtggcgcaag gtctggacat
     2101 cgttggtgta ccaacctcca atgccacccg cgaacttgcg cttgagctcg gtgtcccgct
     2161 caccgacctg ggccagatcg accagctcga cgtgaccatc gacggcgccg atgaaatcga
     2221 tcatcagggc agcatgatca agggcggcgg tgcctgcctg ctatgggaaa agatcgttgc
     2281 agcggcatcg aaaaaaatgg ttgcggtcgt cgatgataaa aaaatcttcg aacgtctcgg
     2341 ccgctttccg ctgcctatag aagtgattcc gttcggctgg cagagcacgg aacgcctgtt
     2401 gcgcgaactg ttcgtttccg cgggcttcga taaaaacgtg cgcatcgtca cgcgcatgag
     2461 gggtacggaa ccgttgctga cggatagcgg gaactggatt ctcgactgtc atcttgaagc
     2521 cattcctgat ccgctcgggt tggcgccgcg cttcaatgca attcctggcg tggtggagaa
     2581 cggt
//
LOCUS       DATGBK010001403         4699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_16182, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001403 DATGBK010000000
VERSION     DATGBK010001403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4699
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16182"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1043
                     /gene="glnA"
                     /locus_tag="VKJ77_19575"
     CDS             <1..1043
                     /gene="glnA"
                     /locus_tag="VKJ77_19575"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HMC47527.1"
                     /translation="AAFFGPEPEFFIFDSVRWSADQSGCFVKIGSEEAPWSSSMEFEG
                     GNTGHRPGTKGGYFPVAPVDTFQDMRSEMCLLLEQIGIPVEVHHHEVAGQGQNEIGTK
                     FSTLVQRADWTQQLKYIIHNVAHTYGKTATFMPKPVVGDNGSGMHVHQSIWKDGKNLF
                     AGDGYAGLSEFALFYIGGIIKHARALNAITNPSTNSYKRLVPHFEAPVKLAYSAKNRS
                     ASIRIPHVSNPKGRRIETRFPDPMANPYLCFSALMMAGLDGVQNKIHPGEAADKNLYD
                     LPPEEDAKIPTVCAGLDEALDALNADREFLTVGGVFTDSMLDAYIELKTNELQRYRQA
                     VHPIEFEMYYSL"
     gene            1211..2356
                     /gene="glnL"
                     /locus_tag="VKJ77_19580"
     CDS             1211..2356
                     /gene="glnL"
                     /locus_tag="VKJ77_19580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HMC47528.1"
                     /translation="MVLKNLIKARKSPPDNSLSDDATLVATHLLPGMEALPTVVLVLD
                     KLSLKIAFANPSAEAMLERSRKQLAQTSWPELFANADELVTTIASIADHRFNATHLDA
                     VLERPGREPLHVHAIVAYLEVAPNYVLLELFENERHLKTDREERIHDLTAVNKQLIRN
                     LAHEIKNPLGGIRGAAQLLEFELGARERDELREYTQVIIKESDRLQTLVDRLLEPHRH
                     PHIVGDVNIHEVCERVRAVILAEFPRGLTLDRDYDVSVPDLRGDKEQLIQALLNIVRN
                     AAEALRERISQGDARIELRTRIARKVTIGKRLHKLALDLHITDNGPGIPEEIRDRIFY
                     PLVSGREDGSGLGLTLAQTFVQQHDGLIEVESKPGCTEFTILLPFEG"
     gene            2511..4016
                     /gene="ntrC"
                     /locus_tag="VKJ77_19585"
     CDS             2511..4016
                     /gene="ntrC"
                     /locus_tag="VKJ77_19585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HMC47529.1"
                     /translation="MKPIWIVDDDQSIRWVLEKALARENFATRSFSGVRDALTALEQE
                     SPQVLVSDIRMPGGSGLELLQTVRDKLPGLPVIIMTAFSDLDSAVAAFQGGAFEYLAK
                     PFDVDKAVELIRRAVDESMRGEAAYDNSVTETPEMLGQAPAMQDMFRAIGRLSHSAAT
                     VLITGESGTGKELVARALHRHSPRANGPFIALNTAAIPKDLLESELFGHERGAFTGAQ
                     AMRQGRFEQAENGTLFLDEIGDMPFDLQTRLLRVLSDGQFYRVGGHNPLKANVRVIAA
                     THQNLESRVRQGLFREDLYHRLNVIRLRLPALRERSEDIPLLTRHFLQKSARDLGVEP
                     KRVSEDALGFLASLPFPGNVRQLENLCNWLTVMAPAQTIEQKDLPPDLTPTQEYAGES
                     TALTASAMEAGGGSNAVLSGGVGGLPASHGTPPAGVPASVWENGLRTEVARLLRENTA
                     DVMDELARRFEAAVIREALDFTRGRKVEAAERLGIGRNTITRKIQELHLDA"
     gene            complement(4170..>4699)
                     /locus_tag="VKJ77_19590"
     CDS             complement(4170..>4699)
                     /locus_tag="VKJ77_19590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HMC47530.1"
                     /translation="DPQQRVIAMTVEGVRIISAYFPNGQAPGTEKFAYKMRWLEALRD
                     WIEGEMKTYPQLALLGDYNIAPEDRDVHDPKAWEGQNLVSPEERAHFVQLIELGLTDT
                     FRMFEQPEKLYTWWDYRMLGFRRNAGMRIDHILVTAELAARCTACEVDKVPRKWEQPS
                     DHAPVIATIRDVRNG"
BASE COUNT          947 a         1341 c         1437 g          974 t
ORIGIN      
        1 acgctgcttt cttcggtccg gaacctgaat tcttcatttt cgactcggtt cgctggagcg
       61 ctgatcagtc gggctgtttc gtcaagatcg gttcggaaga agcaccgtgg tcgtcgtcga
      121 tggaattcga aggcggtaac acaggtcacc gtccgggcac gaagggcggt tatttcccgg
      181 ttgcgccggt agacacgttc caggacatgc gttcggaaat gtgcctgttg ctcgaacaga
      241 tcggtattcc ggtcgaagtg caccaccacg aagtggcggg ccagggccag aacgaaatcg
      301 gcacgaaatt ctcgacgctg gttcaacgcg ccgactggac gcagcagctc aagtacatca
      361 ttcataacgt ggcgcacacg tatggcaaga cggctacgtt catgccgaag ccggtcgtgg
      421 gcgacaacgg ctcgggcatg cacgttcacc agtcgatctg gaaggacggc aagaacctgt
      481 ttgccggtga cggatatgca ggcctgtcgg aattcgcatt gttctacatc ggcggcatca
      541 tcaagcatgc tcgcgcgctg aacgcgatca cgaacccgtc gacgaactcg tacaagcgtc
      601 tcgtgccgca cttcgaggca ccggtcaagc tcgcttactc ggcgaagaat cgttcggctt
      661 cgatccgcat tccgcacgtg tcgaacccga agggccgccg tatcgaaacg cgtttcccgg
      721 atccgatggc gaacccgtac ctgtgcttct cggcactgat gatggccggt ctggatggcg
      781 tgcagaacaa gatccacccg ggcgaagccg ctgacaagaa cctgtacgac ctgccgccgg
      841 aagaggatgc aaagatcccg accgtgtgtg ccggcctcga cgaagcgctg gacgcgctca
      901 acgctgatcg tgagttcctg acggtcggcg gtgtgttcac cgattccatg ctcgacgcgt
      961 atatcgaact gaagacgaat gaactgcagc gctatcgtca ggctgtgcat ccgattgagt
     1021 tcgaaatgta ctactcgctg taaagcgcgt tgcatggcgc acgtgcttct tcgtttgctg
     1081 tcttacggag aagtgcgtcg cctgacgcga agcaggagtg tcgaatgatc gaaaagggac
     1141 ggcgtgccgt cccttttttt aatcgtccgc acttctcctg acaagtttca agacggggtc
     1201 tcactgcacg atggttctca agaatctcat caaggcgaga aagagtcctc ccgacaattc
     1261 gttgtccgac gacgccacgc tcgtcgctac gcatttgctg ccgggcatgg aagcgctgcc
     1321 cacggtcgtg cttgtgctcg acaagttgag cctcaagatc gcattcgcga atccgtcggc
     1381 ggaagccatg ctcgagcgct cgcgcaagca actggctcaa acctcatggc ccgaactgtt
     1441 cgccaatgcg gacgaactgg taacgaccat tgcgtcgatt gccgatcacc gtttcaatgc
     1501 aacgcatctc gacgccgtgc tcgagcgtcc cggccgcgag ccgctgcatg ttcacgcgat
     1561 cgtggcgtat ctggaagtcg caccgaatta tgtgctgctc gaactatttg agaacgagcg
     1621 gcatttgaag accgaccgcg aagagcgtat tcacgatctg acggcggtga acaagcaact
     1681 gattcgcaac ctcgcgcatg aaatcaagaa tccgcttggc ggtattcgag gcgctgcgca
     1741 actgctcgag ttcgagttgg gggcgcgcga acgcgacgag ttgcgcgaat acacgcaggt
     1801 gatcatcaag gaatcggatc ggctgcaaac cctggtagac aggttgctcg agccacaccg
     1861 gcatccgcac attgttggcg acgtgaatat tcacgaagta tgcgagcgcg tccgcgccgt
     1921 gattctcgcg gagtttccgc gtggcctcac gctcgatcgc gattacgacg tgagcgtgcc
     1981 cgacttgcgc ggcgataaag aacagcttat ccaggcattg ctcaacatcg tgcgtaacgc
     2041 ggcggaagcg ttgcgcgaac gcatttcgca aggcgatgcg cgtatcgagt tgcgtacgcg
     2101 tattgcgcgc aaagtgacga ttggcaagcg cctgcacaaa ctggcactgg acttgcatat
     2161 cactgacaac ggtcccggca tcccggaaga gatacgcgac cggattttct atccgcttgt
     2221 ttccgggcgg gaagatggga gtggactggg ccttacgctc gcgcagactt tcgtacagca
     2281 gcacgatggg ttgatcgaag tggaaagcaa gcccggttgc accgagttca ccatcttgtt
     2341 gccgttcgaa ggctgagcgg acaccgatga aggatcgaag catgaagcta acgaagcatg
     2401 aagctaagga tcgatcacga gggttcatcg atatttttga aaagcgctag tgcgcctgac
     2461 cgtttcgacg ggcttatacc gaaccacacg aagacatctc gccgaactat atgaagccga
     2521 tctggatagt agacgacgac caatccatcc gctgggtgct tgaaaaagcg ctcgcaagag
     2581 agaacttcgc cacgcgcagt ttttccggcg tccgcgacgc gctcacagcg ctcgaacagg
     2641 aaagcccgca agtgcttgtg tccgacatcc gcatgccggg aggttcggga ctcgaattgt
     2701 tgcaaacggt gcgcgataag ctgcccggtt tgccggtcat catcatgacg gcgttctccg
     2761 atctcgacag cgccgtcgct gcgttccagg gcggtgcgtt cgagtacctg gcgaagccgt
     2821 tcgatgtcga caaggcggtt gaactgatcc gccgcgctgt cgatgaaagc atgcgcggtg
     2881 aagcggccta cgacaatagc gtcaccgaaa cgcccgagat gctcggccag gcaccggcaa
     2941 tgcaggacat gtttcgcgcg atcggccgtt tgtcacattc cgccgccact gtgctcatca
     3001 cgggcgaatc aggcaccgga aaggagcttg tcgcgcgtgc gctgcaccgc catagcccgc
     3061 gcgcgaatgg gccgttcatt gcgttgaaca ccgccgcgat cccgaaggat ctgcttgagt
     3121 ccgagttgtt cggccacgag cgcggcgcgt tcacgggtgc gcaggcgatg cggcaggggc
     3181 ggttcgagca agctgaaaat ggtacgttgt ttctcgatga aatcggcgat atgccgtttg
     3241 atctgcagac gcgcctgttg cgtgtgttat ccgatgggca gttttatcgc gtgggcggcc
     3301 acaatccgtt gaaggcaaac gttcgggtga tcgcggcgac gcaccagaac cttgagtcac
     3361 gtgtgcggca agggttgttt cgggaggact tgtatcaccg gctgaacgtg attcgcttgc
     3421 gcttgcccgc gttgcgcgag cgcagtgaag acattccgtt gctcacgcgg catttcctgc
     3481 aaaaaagcgc gcgcgacctg ggtgtagagc cgaagcgcgt ctcggaagat gcgcttggat
     3541 ttttggcgtc gctgccgttt cctggcaatg tacggcaact cgaaaacctg tgtaactggc
     3601 tgaccgtgat ggcgccggcg cagacaatcg agcaaaagga tttgccgccg gatctcacgc
     3661 cgactcagga atacgcgggt gagagcactg cgttgacagc ctcggcgatg gaggctggcg
     3721 gtgggtcgaa tgcggttctc tccggcggtg tcggcggttt gcctgcatcg cacggtacgc
     3781 cgcctgccgg cgttcccgcg agcgtttggg aaaacggctt gcggaccgag gtcgcgagat
     3841 tgcttcgtga gaataccgcc gatgtcatgg acgagctcgc gcggcgcttt gaagctgcgg
     3901 tgattcgcga ggcgctcgac ttcacgcgcg gccggaaagt ggaagcggcc gagcggctgg
     3961 ggatcggccg caacacgatc acacgcaaga ttcaggagtt gcacctggac gcttgatggt
     4021 tgggtagtgg agggcgtctg gcggcgccct cgccggggtc ataaccgtat gacttgaccg
     4081 cgacctcaag tctcacgcct caagttccaa gtgagacata acgcggtcgc ctacgcgctt
     4141 ggcatagctt ccccgttaac gctccgctgc tagccattcc ttacatcgcg aatcgttgcg
     4201 attaccggcg cgtgatccga cggctgttcc cacttccttg gcactttgtc cacttcgcac
     4261 gcagtgcatc gtgcggcgag ttctgccgtg accagaatgt gatcgatgcg cattcccgca
     4321 ttacgacgga acccgagcat ccgatagtcc caccatgtgt aaagcttctc gggctgctcg
     4381 aacatgcgga aggtgtcggt gagtcccagt tcgatcagct gcacgaaatg cgcgcgttct
     4441 tcgggcgaga cgaggttctg gccttcccac gctttcgggt cgtggacgtc gcgatcttcc
     4501 ggggcgatgt tgtagtcgcc cagcagcgcg agttgtggat acgtcttcat ctcgccctcg
     4561 atccagtccc gcagtgcttc gagccagcgc atcttgtagg cgaacttttc cgtgcccggc
     4621 gcctggccgt tggggaaata cgccgagatg atccgcactc cttcgacggt catggcaatc
     4681 acgcgttgct gcgggtcct
//
LOCUS       DATGBK010001404         1598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_16192, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001404 DATGBK010000000
VERSION     DATGBK010001404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16192"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /gene="tnpA"
                     /locus_tag="VKJ77_19595"
     CDS             <1..379
                     /gene="tnpA"
                     /locus_tag="VKJ77_19595"
                     /inference="COORDINATES: protein motif:HMM:NF033573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HMC47531.1"
                     /translation="KTLSPDLLGYLETAFGEILSAWRCKLLEFGGEADHVHLLIDIHP
                     ALDISVLINNLKTASARRTRNRFADHLAPFYRKPLFWSRAYFVGSVGGATLETVRAYV
                     DAQGTEEHARKSAAKNPKTKPFA"
BASE COUNT          350 a          460 c          480 g          308 t
ORIGIN      
        1 caagacgttg tcgccggatc tgctcggata cctagaaacg gcgttcggcg agatcctatc
       61 ggcgtggcgt tgcaagttgc tggaatttgg cggcgaagcg gatcacgtgc acctgctgat
      121 cgacatccat ccggcgctag acatatcggt gctgattaac aacttgaaga cggcgagcgc
      181 gcggcgcacg cgaaaccggt ttgccgatca cctggcgccg ttctaccgaa agccgttgtt
      241 ttggagccga gcgtactttg tcgggagtgt cggcggcgcc acgctggaaa cggtgcgtgc
      301 ttacgtagat gcgcaaggca ctgaggagca cgcccggaag tcggccgcga agaatccaaa
      361 aacaaaaccg ttcgcttgac cccctcctga tccggtcggc ttcgcctatg ggttcgcaag
      421 cgaagcggcc ggactaggaa ggggaatgcg ctcatatatg ttcaacgctg acgcgggttg
      481 cgctgtcgct ggacgccgcc gcacttcgag gcaataccgc gattggacga catctgcctg
      541 ggtgacgctt caaaaacgga aaacaaagcg cggtagctgt atcgacagaa cgagcgtcgc
      601 gaatcggacc cgaagccgcc tctcgaaaac agccaccaac gatgtcactc cctacggcct
      661 cgcagtgaag gcgctcggcc gcacacaatg tttttcgaac ccttcaggac gcgagtctga
      721 taacaagtga ctatcgatta catcgaccac gcgcgccacg ctcacgtgtg gctgcgcgct
      781 tgaaaaaaat cgaatcgttc gcagcctcaa gtagtggtaa agctcagccg cctcaagtat
      841 cgactcaggc aaaagaggat gcagcgagca aggggatgcg gcggcgacgg caacactttc
      901 aacggggcat gcgtgccgga cgagtaatga gcgcaggcat cgaacaactg cggcctgtcg
      961 cctgaccggc gacgtgcgaa gcatcgcttc gccctcttgg tcgatgacgc tcacggtctc
     1021 tgcgtcaggg ccgggtgcaa cgagtccctt aaaacccatt tccatcacga cgaatacgcc
     1081 gaaaggcgtc accactataa cgtcgagttg tgtcgtggga agccgtgttc cgggcgcgtg
     1141 aatcaagatc gcgcgctcgc gtaggacgta gtcagcgatg ccgagacgat caagtgtttg
     1201 ccgaaacgca tcggatacgg aacacatcgc tgtgccctcg cccttcggga cgctgtgcat
     1261 cttttcgttt gccgtgttgc gcgcgctctc accgcgacct gtgcagtcgg ctttgtccac
     1321 agttgtgtgg gtcaaaatat ttacctcgct cagttaggtt gataccagcc taatgaagag
     1381 gttggaaagt caagcaacga cgacgtcgcg acagcctggg ccgcctcaag caatccgggc
     1441 caccactggc aacgatagaa agtagcgacg tctgcgacac attgcgcctt gcgtcagata
     1501 tctaattgtc gctgccgcca gcggtcgata cggggtcttc ggcgttggcc agtttcccga
     1561 gcacgcggta cagcgcttgg cgggagatgc cgagggct
//
LOCUS       DATGBK010001405         3887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_85698, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001405 DATGBK010000000
VERSION     DATGBK010001405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3887
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85698"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1180)
                     /locus_tag="VKJ77_19600"
     CDS             complement(<1..1180)
                     /locus_tag="VKJ77_19600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47532.1"
                     /translation="MNPVLRMSALRVVAPNGQVLVDNVSVTLAQGEVLGLIGESGAGK
                     STIGLAALGYARGRCRITGGEVWLAGENILGATPQRQRALRATKVAYVAQSAAAAFNP
                     ALTIGEQVCEGPLRHGLMGRDEARAWSRELFASLDLPDPDTFGRRYPHQVSGGQLQRA
                     MVAMAMSCKPSILVLDEPTTALDVTTQIEVLVVLRRIVREFGAAALYITHDLAVVAQV
                     ADRIMVLRGGRMVEEGTTDAVLNAPRDEYTQRLVAERSAADTLRASPPHVTEPLLSIE
                     GLNAGYHGKAIVRNIAVQVARGETLALVGESGSGKSTVARAIVGLIEQQTGTSRFDGK
                     PLPHRLAERSRELKRRIQLVYQSPDVALNPMHTVGEIIGRPVEFYFGIQKDKVHERVL
                     E"
     gene            complement(1177..2007)
                     /locus_tag="VKJ77_19605"
     CDS             complement(1177..2007)
                     /locus_tag="VKJ77_19605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47533.1"
                     /translation="MKVFGKEVPLSAAIGMLLVAVIAMASLCASLIAPHGETETVGDV
                     WMMPGAGHWLGTDSIGRDMLSRLLYGGRTTLGLALAITLLSFSFGIVTGFAAAVLGRK
                     VDQVLSRIVDTLMAMPVLIFALMILSVLGTSMPVLIGTIAILDSTRVFRLARLVAQGI
                     AVQEYVEAARLRGEGLAWIIRREILPNAVPPLLAEFGMRFGFTILFVAGLSFLGLGIQ
                     PPYADWGGMVRDNAQVINFGGIAPLVPAAAIALLTIGINLIVDWLLSVRAVGQAGVIA
                     "
     gene            complement(2014..2961)
                     /locus_tag="VKJ77_19610"
     CDS             complement(2014..2961)
                     /locus_tag="VKJ77_19610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47534.1"
                     /translation="MKRLVLQRVLAGVLTLWLVSVLIFVGTELLPGDVASAILGQSAT
                     PETVAALRASLGLDHPALQRYGLWLLHFLHGDLGTSLTNGRPVSEDLLPRLYNTLFLA
                     SYAALVAVPLSVLIGIASAIWQDSLFDRAASVLSLASVSMPEFFVGYVLLLLLAVKFP
                     VLPSLAAVSPDMAFSERIYATTLPTLTLLFVVAAHMLRTTRASVLAVMGSAYTETAIL
                     KGLPKSWIVVRHALPNALAPIINAVSFNLAYLIVGVIMVEVVFVYPGVGQLMVDAVSK
                     RDLPVVQACGMLFATAYVGLNTVSDVLAVWANPRLRHAR"
     gene            complement(2961..>3887)
                     /locus_tag="VKJ77_19615"
     CDS             complement(2961..>3887)
                     /locus_tag="VKJ77_19615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47535.1"
                     /translation="FKRNPHYWKSDGPYVDAVELIVINDATARTNALISGQVHAINRV
                     DFKTVDLLKRSPTVNIVRSSGGQHFTFLMDCAASPFADNNVRLAVKYGIDRQKQLTTI
                     LRGYGSIGNDHPIPKTDRFYAADLPQHAYDPDKSKFYLKKAGLSELKVELATSDAAFA
                     GAVDSAALFQGECAPAGIQLSIRRQPADSYWDKVWMQAPFCMGYWGGRPTADQMLSTA
                     YKSDAKWNDTHWRDPKFDALLLQARAMLDDTKRRELYREMQLMVSDDGGAMIPLFADY
                     IDATSSKLQGATPHPLFNFMGGRLAEHVWLES"
BASE COUNT          813 a         1285 c         1128 g          661 t
ORIGIN      
        1 actccagtac gcgctcatgc actttatctt tttggatacc gaagtaaaac tccaccggac
       61 gcccgatgat ctcgccaacg gtatgcatcg gattaagggc gacgtcaggc gactggtaga
      121 caagctggat acgccgcttc aactcacgcg aacgctcagc caggcgatgc ggcaagggct
      181 tgccgtcgaa ccgcgacgta ccggtctgct gttcgattaa accgactatc gctcgcgcga
      241 ccgtgctctt gccgctaccc gactcgccaa cgagcgccaa tgtttcaccg cgtgcaacct
      301 gcacggcgat attgcgaacg atcgccttgc cgtgataacc cgcgttcagt ccttcgatac
      361 taagcagtgg ttccgtcaca tgcggaggac tggctcgcaa ggtgtcagcc gcactgcgtt
      421 cagccaccag gcgctgggtg tattcgtcgc gcggcgcgtt cagcaccgcg tccgtcgtgc
      481 cctcttccac cattcggccg ccacgcaaca ccatgatccg gtcggcgacc tgtgcgacga
      541 ccgccagatc gtgcgtgatg tagagcgcgg ccgcgccgaa ctcacgcacg atcctgcgca
      601 gcacgaccag cacttcgatc tgcgtggtca catcaagcgc cgtagtcggc tcatcaagca
      661 caaggattga tggcttgcaa gacatcgcca tagccaccat cgcccgttgc aactgcccgc
      721 cggagacctg atgcggataa cgccgcccga acgtatccgg gtctggaagg tcgagtgacg
      781 cgaacaactc gcgcgaccag gcccgcgctt cgtcgcggcc catcaatcca tgtcgcaatg
      841 gcccttcgca gacctgctcg ccaatggtca acgccgggtt gaatgcagcg gctgcgctct
      901 gagccacata agccaccttg gtcgcgcgca gtgcacgttg ccgttgcggc gttgcgccca
      961 ggatgttctc gccggcgagc cacacttcgc cacctgtgat ccggcagcgg ccgcgcgcat
     1021 aaccgagcgc ggcgaggccg atcgtcgatt tacccgcgcc ggattcaccg atcagcccaa
     1081 gtacttctcc ttgagcgagc gttacactga cgttgtcgac cagtacctga ccgttgggcg
     1141 ccacgacccg caacgcgctc attctcaaga ctgggttcat gcgatcactc ccgcctgccc
     1201 gactgcccgc accgacaaca gccagtcgac gatcagattg ataccgatcg tcagcagcgc
     1261 aatcgccgcg gccggcacca gcggcgcgat gccgccgaaa ttgatcacct gcgcgttgtc
     1321 gcggaccatg ccgccccagt cggcataggg cggctggatg cccagcccga ggaagctcaa
     1381 gcccgccacg aacaggatcg tgaacccgaa gcgcatgccg aattcggcca gcaaaggtgg
     1441 caccgcattc ggcaggattt cgcggcggat gatccacgcg agcccttctc cgcgcagcct
     1501 cgccgcttcc acatattcct gtacagcgat accctgtgcg acgagccgcg cgagccggaa
     1561 cacgcgcgtt gaatcgagaa tcgcgatcgt gccgatcagc accggcatcg acgtacccag
     1621 caccgacagg atcatcagcg cgaagatcag gacgggcatc gccatgaggg tgtcgacgat
     1681 cctcgacagc acctggtcga ccttgcgtcc cagcaccgcg gccgcgaacc ccgtgacaat
     1741 gccaaaggaa aaggacagca gcgtgatcgc gagcgcgagg ccgagcgttg tacgcccgcc
     1801 gtacaacaga cgcgaaagca tgtcacgtcc gatgctgtcg gtgccgagcc agtggccagc
     1861 accgggcatc atccatacgt cgccgactgt ttcggtttcg ccgtgcggcg cgatcaacga
     1921 ggcgcacaac gaggccatcg caatgaccgc gacaagcaac atcccgatcg ccgcgcttaa
     1981 cggcacttcc ttgccgaaca ccttcattgg ctcttacctc gcatgccgca agcgcggatt
     2041 ggcccagacc gcgagcacat cggacacggt attcagcccg acataagccg tggcaaacag
     2101 cattccgcaa gcctgcacca ccggcagatc acgcttcgac accgcgtcca ccatcaactg
     2161 cccgacaccc ggatagacga acactacctc gaccatgatg acgccaacga tcaagtacgc
     2221 caggttgaac gacaccgcgt tgatgatcgg cgcgagcgca ttgggcagcg cgtggcgcac
     2281 cacgatccat gacttgggca agcccttgag aattgctgtt tcggtatagg cgctgcccat
     2341 cactgcaagc acggacgctc gcgtggtgcg cagcatgtgg gcggccacaa caaacagcag
     2401 ggtgagcgtt ggcaacgtgg tcgcgtagat gcgctcggaa aacgccatgt ccggcgacac
     2461 ggcggccagg ctcggcagca cgggaaactt gaccgcgagc aagagcagca gcacataacc
     2521 gacgaagaac tccggcatcg atacgcttgc aagcgacagc acgctggccg cgcgatcgaa
     2581 gagactgtcc tgccatattg cggacgcaat gccgatgagt accgacagcg gcaccgcgac
     2641 aagcgcagca tagcttgcga gaaacagcgt gttgtatagc cgcggcagca agtcctcgct
     2701 gaccggacgt ccgttcgtca gcgacgtccc gaggtctcca tgcaggaaat gcagcaacca
     2761 tagcccgtaa cgttgcagcg ccgggtggtc gagaccgagc gacgcccgta gcgccgcgac
     2821 cgtttccggc gtcgccgact gaccgaggat ggcagaagcc acgtcaccgg gaagcagttc
     2881 ggtgcccacg aagatcagca ccgaaaccag ccacagcgtc aacacacccg ccagcacccg
     2941 ctgcaacaca agccgcttca ttacgactcc agccagacgt gttccgcgag cctgccgccc
     3001 atgaagttaa acagcggatg cggcgtggcg ccctgaagct tgctgctggt tgcatcgata
     3061 tagtcggcga agagcgggat catcgcgccg ccgtcatcgc tcaccataag ctgcatctcg
     3121 cggtacaact cgcggcgctt ggtgtcgtcg agcatcgcgc gtgcttgcag gagcaatgcg
     3181 tcgaactttg ggtcgcgcca gtgcgtgtcg ttccatttcg cgtcggactt gtacgcggtc
     3241 gaaagcatct ggtccgccgt cggtcgaccg ccccaatagc ccatgcaaaa aggcgcctgc
     3301 atccacacct tgtcccagta gctgtcggcg ggctgacggc ggatagaaag ctgaatgccc
     3361 gcaggcgcgc actcgccctg gaacagcgca gccgaatcga ccgcaccggc gaaggctgcg
     3421 tcggacgtcg ccaactcgac cttcaattcc gacaagccag ccttcttcag atagaacttc
     3481 gacttgtccg ggtcgtatgc atgctgcggc agatctgcgg cataaaaacg gtcggtcttc
     3541 ggaatcggat ggtcgttgcc gatcgacccg taaccgcgca ggatggtcgt caattgcttc
     3601 tggcgatcaa tgccgtattt gaccgcaagc cgcacattgt tgtcggcgaa cggcgacgca
     3661 gcgcagtcca tcaagaacgt aaagtgctgg ccaccggatg aacgcacgat gttgacagtc
     3721 gggctgcgct tgagcaggtc gactgtcttg aagtcgaccc ggttgatcgc gtggacctga
     3781 cccgagatca gcgcgttcgt gcgcgccgtg gcgtcgttga tcacgatcag ttcgactgca
     3841 tccacataag ggccatcgct cttccagtag tgcggattgc gcttgaa
//
LOCUS       DATGBK010001406         1546 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_317284, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001406 DATGBK010000000
VERSION     DATGBK010001406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317284"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..499)
                     /locus_tag="VKJ77_19620"
     CDS             complement(<1..499)
                     /locus_tag="VKJ77_19620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47536.1"
                     /translation="MKRLLVSASLCVCVALGVLSTACSGPNGGQLLPASGTTKTISAG
                     GGAGVPSSIPQPPLPPGIGDCVKFTAGSVSNPIVTNVNNKLSAANVTFNFTAASCQAK
                     PELIGLQYTVSNGLGPNTPCGNVATPVPAGSVSLGGSGGKSVTIVVPVPNCPGNTRLY
                     TVTLSG"
     gene            complement(677..1543)
                     /locus_tag="VKJ77_19625"
     CDS             complement(677..1543)
                     /locus_tag="VKJ77_19625"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HMC47537.1"
                     /translation="MIILACIIFGKGGASGVSLAPFSIGHTPPLGLGVATVFALLSFA
                     GFEGAAVLGAESIDPKRTIPRALIASVVSAGLLYVFIMFAQSIGFGLDARGVAAFAAS
                     GSPLGDLAVRYAGVPFAAFIMGGAAISAFAATLASATAAARLTFSFARDGHFPQSLGT
                     VDARSGTPVRAFLTTVVIGTVIAIVFALCHVSGTDTFGACGTIATLGLIIIYATVQIA
                     ALRLFFTQWNIVARCIPIIAFVLLVFTFVATMFPIPSGWPALYPYTVAAWILAGVIVL
                     RKPSRIIHEDHS"
BASE COUNT          382 a          426 c          459 g          279 t
ORIGIN      
        1 acccgctgag agtaaccgta tatagacgcg tattaccggg gcaattgggt acggggacga
       61 cgatggtgac gctcttgccg ccgcttccgc cgagtgagac ggaacccgcc ggaacgggcg
      121 tggccacatt tccgcagggc gtattaggac cgaggccgtt gctgaccgtg tattgcaggc
      181 caatcaattc cggctttgcc tgacagctag cagccgtgaa gttaaatgtg acgttcgccg
      241 ctgacagttt attgttcaca ttggtgacga tggggtttga gaccgaaccg gcggtgaact
      301 tgacgcagtc gccgataccc ggtgggagcg gtggctgtgg aatgctcgaa gggacacctg
      361 caccgcctcc tgcgctgatg gtttttgtcg tcccggatgc aggcaagagt tgtccgccgt
      421 tcgggccgct gcatgcggtc gataaaacgc ctaaggcaac acaaacgcaa aggcttgctg
      481 ataccagcag tcttttcata gaggtggtgt tctcccgtgc gcccgtcccg agcgcttcat
      541 gaattagtga gcggtggttg ccatcccagc aagcaacctc tcgagcatcc tacgatacgg
      601 atatgaaaag atcatgaaaa gtttacatca cacaattcat gtatggcgcg tcacacaatt
      661 catgaaataa tgaaactcat gaatgatctt cgtgaatgat gcgtgatggt ttgcgtaaca
      721 cgatgacgcc ggccaaaatc caagcagcga cagtgtatgg atagagcgcc ggccatccgc
      781 tagggatcgg aaacatcgtg gcgacaaatg tgaaaaccaa gagcacgaag gcgattatcg
      841 gaatgcaccg tgcaacgata ttccactggg tgaagaacag tcgcagcgca gcgatttgta
      901 cggttgcgta aataataatg aggcccagcg tcgcgattgt accgcaagcc ccgaacgtat
      961 cggtgccgct gacgtgacaa agcgcgaaga cgattgcgat caccgttcca atgacgaccg
     1021 tcgtgagaaa tgcgcgcacc ggcgtaccgc tgcgggcatc gaccgtaccg agcgattgcg
     1081 ggaagtgccc atcgcgcgcg aacgagaacg ttagccgcgc ggccgccgtg gccgaggcca
     1141 gcgtggccgc aaacgccgaa atcgcagcgc cgcccatgat gaatgcagcg aacggaacgc
     1201 cggcgtaacg tacggcgaga tcgcccaacg gcgaacccga agcggcaaac gccgcgacgc
     1261 cgcgcgcatc gagtccgaat ccgatcgatt gggcgaacat tatgaaaacg tagagcagac
     1321 cggcgcttac gacgcttgca ataagtgcac gcggaatcgt tcgtttcgga tcgatcgact
     1381 cagcgccaag aacggcggca ccttcaaaac ccgcaaatga aagcagggca aagacggttg
     1441 caactccgag cccgagcggc ggcgtgtgcc cgatggaaaa aggcgcgagt gaaacgccgc
     1501 tcgctccccc ctttccaaaa ataatacacg ccaggatgat catggc
//
LOCUS       DATGBK010001407         2801 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_317318, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001407 DATGBK010000000
VERSION     DATGBK010001407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2801
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317318"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1368
                     /locus_tag="VKJ77_19630"
     CDS             88..1368
                     /locus_tag="VKJ77_19630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009453583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HMC47538.1"
                     /translation="MHDRHVSVIGLGYVGLPVAIAFGIQRRTIGFDTSPARLADLRAG
                     LDRNGETSREELAAARLELTDCIEVLRQANFHIVAVPTPISSGAQPDLMPVKQASETV
                     GRALKRGDVVVYESTVYPGVTEEICVPILERESGLKLGTDFSVGYSPERINPGDKQHT
                     FRNIVKIVSGSDAATLDLVAQVYSSVVTAGVYRAGSIKVAEAAKVIENTQRDLNIALM
                     NEAAIIFDYLDIDTREVLDAAGTKWNFLHFMPGLVGGHCIGVDPYYLTHKAQVSGYTP
                     QVILAGRRVNDGMGRFVADRAVKTLIRTGCAPLRAKATVLGLTFKENCPDLRNSKVID
                     IVHHLQDYGLEVQLHDPLADAVEAFDEYGVTLTGFDALEPADLIVLAVPHREFLVKTD
                     ALLALAKPGAVFVDVKSSLPLDAISAAGLVIWRL"
     gene            1429..2565
                     /locus_tag="VKJ77_19635"
     CDS             1429..2565
                     /locus_tag="VKJ77_19635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006497045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HMC47539.1"
                     /translation="MSRLSGRVRIFARALPRLALKPLRHKPQVLKRILIAHHLLLGDT
                     LLLTPLVAKLRAQYPDAQIVLTCPKPIVPLYAGRPFGIDVIPFDPRDFRSVNAVLRSG
                     PYDLGIVAGDNRHAWLALAAGCRWIIGHAADTPPWKNMPMNEAVPYPDAPAAWADLAT
                     ELVAGPPPRPYRLSDWPAPAAAAFSEPDARALRSPYVVLHPGASTAVKRWPDDRWKAL
                     AAFVEARGFTPVWSGGPSETALIDAIDPDARYPNFAGRIDLGQVWHLFSGARAIVCPD
                     TGVAHLGRLTGVPTVTLFGPGNALIHGAGNYWRDAPFMPVTIADMPCRDEPNIFRRHV
                     AWARRCDRNETTCVAWHGDHADCMGFISLEVVCNSLQAVLPGVQ"
     gene            2562..>2801
                     /locus_tag="VKJ77_19640"
     CDS             2562..>2801
                     /locus_tag="VKJ77_19640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HMC47540.1"
                     /translation="MTKTCKLVERVLWVACPVIMFVAMFAHMTALENMALVLVGVGTI
                     AAACSSARPSPLHWPLLWPIVVWSAWALASIAWSPY"
BASE COUNT          475 a          834 c          906 g          586 t
ORIGIN      
        1 tgctgacccg ccggaagctg ccttcgggct cgctcgtcat gaccattcca agcatttttc
       61 cgagcacttt ttcgagcact tattaacatg catgatcgcc acgtctccgt cattggcctg
      121 ggctatgtgg gtttgcccgt cgccattgca ttcggcatcc aacgccgcac gattggtttc
      181 gatacgagcc cggcccggct agccgatctt cgtgcgggcc tcgatcgcaa cggcgaaacc
      241 agccgtgagg aactggccgc tgctcgcctg gaactgaccg attgcatcga ggtgctccgg
      301 caggccaatt ttcatatagt cgcggtacct acgccaatca gctcgggcgc acagccggat
      361 ctgatgccgg tgaagcaggc ctccgagacg gtcggccggg cgctaaaacg cggtgacgtc
      421 gtggtgtacg aatcgacggt ctatcccggc gtcactgagg aaatctgcgt cccgatcctc
      481 gagcgtgaat cgggcctcaa gctgggcacg gatttctcgg tcggctacag tcccgagcgc
      541 attaatcccg gcgacaagca gcacacgttt cgcaatatcg tgaagatcgt gtccgggtcg
      601 gacgcagcaa cgctcgatct ggtggcgcag gtctatagct cggtggtgac agccggtgtg
      661 taccgtgccg gttcgatcaa ggtggcggag gccgcgaagg tcatcgagaa tacgcagcgc
      721 gacctgaata ttgcgctgat gaacgaggcg gcgatcatct tcgactacct cgacatcgac
      781 acacgcgaag tcctggacgc cgcgggcacc aagtggaact tcctgcattt catgccgggg
      841 ctggtgggcg gacattgcat tggcgtggat ccgtattatc tgacgcacaa ggcgcaggtc
      901 tccggttata cgccccaggt gatcctcgcc gggcggcgcg tgaacgacgg catgggccgt
      961 ttcgtggctg atcgggcagt gaagacgctg atccggaccg gctgcgcacc gctgcgtgcc
     1021 aaggcgacgg tgctcgggct gacgttcaag gaaaattgtc cggatttgcg caattcgaaa
     1081 gtgatcgata tcgtgcatca cctgcaagac tacggactcg aggttcagct tcacgatccg
     1141 ctcgcggacg cggtggaagc attcgatgaa tacggcgtga cgctgacggg tttcgacgcg
     1201 ttggaacctg ccgatctgat cgtgctggcg gtcccgcatc gcgagttttt ggtgaaaacg
     1261 gacgcgttgc tggcgctggc aaaaccaggc gccgtgttcg tcgatgtcaa gtccagcctg
     1321 ccgcttgatg ccatcagcgc ggccggtctt gtaatatggc ggctttgaaa gcccgggctc
     1381 actacgatca accggcataa tctggatttc acgtaggaac gccacccgat gagccgactt
     1441 tccggacgcg tgcgcatctt cgcccgcgcg ttgccccggc tggcgttgaa gccgctgcgt
     1501 cacaagcctc aagtcttgaa gcgcatcctg atcgcgcatc atttgctgct cggcgacacg
     1561 cttctgctca cgccgctcgt cgcgaaactt cgcgcacaat atcctgacgc gcagatcgtg
     1621 ctgacctgtc ccaagccgat cgtgccgctc tacgcgggca ggccgtttgg catcgacgtc
     1681 attccgtttg acccgcgcga tttccgctcg gtcaatgcgg tgctgcgttc ggggccgtac
     1741 gatcttggca tcgtggccgg ggacaatcgc cacgcgtggc ttgcattggc ggcgggatgc
     1801 cgctggatca tcggacatgc tgcggacacg ccgccctgga aaaacatgcc gatgaacgaa
     1861 gccgtgccgt atcccgacgc gcccgcggca tgggctgatc tcgcgaccga actggtggcc
     1921 gggccgccgc cgcggccgta tcggctgagc gactggcctg cgcctgcggc cgccgcgttt
     1981 tcagaacctg acgcgcgcgc gttgcgaagt ccttacgtgg tcttacatcc gggtgcgagc
     2041 acggcggtca aacgctggcc cgatgaccgc tggaaagcac tggcggcgtt tgtcgaagca
     2101 cggggtttca cgccggtgtg gagcggcggc ccgagcgaga cagcgctgat cgatgccatc
     2161 gatcccgatg cccgctatcc gaatttcgcg ggccggatcg atctgggaca ggtgtggcat
     2221 ctgttctccg gtgcgcgggc gatcgtctgt ccggacacgg gcgtagcgca cctcgggcgt
     2281 ctgaccggcg tgccgacggt tacattgttc ggccccggta atgcgttgat acatggcgca
     2341 ggaaattact ggcgcgatgc gccgttcatg ccggttacta tcgcggacat gccgtgccgc
     2401 gacgaaccga atattttcag acggcacgtg gcctgggctc gccgctgtga ccgcaatgag
     2461 acgacttgcg tcgcgtggca tggtgaccat gcggactgca tgggatttat ttcgcttgag
     2521 gtcgtctgca acagcttgca ggcggtcctt ccgggagtgc aatgacgaag acgtgcaagc
     2581 tggtggaacg cgttctgtgg gtggcgtgtc cagtgattat gtttgtcgcg atgtttgccc
     2641 atatgaccgc gctcgagaat atggcgctgg tgctggtggg cgtcggcacg attgccgcgg
     2701 cttgttcttc ggcgcggccg tcgccgctgc actggccgct gctgtggcct attgttgtct
     2761 ggagtgcgtg ggcgctggcg tcgatcgcgt ggtcgcccta t
//
LOCUS       DATGBK010001408         2022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_294357, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001408 DATGBK010000000
VERSION     DATGBK010001408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294357"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..792
                     /locus_tag="VKJ77_19645"
     CDS             <1..792
                     /locus_tag="VKJ77_19645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HMC47541.1"
                     /translation="KKCSIDLNSDMGEGFGPWTIGDGVDAEIMPLISSANIATGFHAG
                     DPNIMARTVQSAKEAGVGVGAHPGFRDLVGFGRRTMTESPQALVNDIVFQLGALREFA
                     RLANVGVQHVKPHGALYMLAARDEELSRCLIGTLQKIDPSLLLYCMESSVTYKVACEL
                     GQPVVREFYADRDYDASGSIVFTRRVGRLDPAQVAAKVLRACVQGRVTTVEGDEIDID
                     FDSVCIHSDTPGALELVQTTRDALIANDIRIAAPQLASPNSFRSA"
     gene            808..1050
                     /locus_tag="VKJ77_19650"
     CDS             808..1050
                     /locus_tag="VKJ77_19650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase"
                     /protein_id="HMC47542.1"
                     /translation="MALHDIVSPLPGTFYRRPSPDAAPLVEIGSEIDEGTTVGLVEVM
                     KQFSEIEATSKGRVTEILAEDGEPVDAGQVLMRIEG"
     gene            1055..>2022
                     /locus_tag="VKJ77_19655"
     CDS             1055..>2022
                     /locus_tag="VKJ77_19655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012329328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HMC47543.1"
                     /translation="MSSETFYKPQRIRTLLVANRGEIAVRVIRAAHELGMRAAVTVSD
                     ADRDSLAARMADQAVPIGSAHAAKSYLNPDAILEAARQCGADAIHPGYGFLSENAAFT
                     EKVENAGLIFVGPSSSIIAMMGDKARARATAQRAGVPTVPGSEGVLDSLEQARDVAGG
                     IGYPVMIKAAAGGGGRGIRVAHDAAQLDVELPLAQREALAAFGNAGVYLERFIGRARH
                     IEVQVLGDGKNVVHLFERECSLQRRRQKIMEEAPSPSLTPELRASLCESATRLAREVG
                     YRSAGTLEYLFDETRGEFYFIEMNTRIQVEHPVTEAITGIDLVRESL"
BASE COUNT          398 a          611 c          650 g          363 t
ORIGIN      
        1 aagaaatgca gcatcgacct gaattcagac atgggcgaag gtttcggccc gtggacgatc
       61 ggcgacggcg tggacgccga gatcatgccg ctgatcagct cagccaacat cgccacgggt
      121 ttccatgcgg gagacccgaa tatcatggcc cgcacggttc aatcagcgaa agaagcgggt
      181 gtgggcgtcg gtgctcatcc gggttttcgt gacctggtgg gattcggccg acgcacgatg
      241 accgagtcgc cgcaggcgct ggtgaacgac atcgtgttcc agcttggcgc gttgcgcgag
      301 ttcgcaaggc tggcgaatgt cggcgtgcag catgtgaagc cccatggcgc gctctacatg
      361 cttgcagcgc gggacgaaga gttgtcccgt tgcctgattg gaaccctgca gaaaatcgat
      421 ccgagcctgc tgctgtattg catggaatcg tcggtcacgt acaaagtggc ctgcgaactg
      481 ggccagcccg tggtccgcga gttctacgcc gatcgcgact acgacgcgag tggctcgatc
      541 gttttcactc gccgcgtcgg ccggctcgac ccggctcagg tggccgcaaa agttttgcgc
      601 gcctgcgtgc aaggacgcgt aacgaccgtc gagggcgatg agatagacat cgatttcgat
      661 tcggtctgca tccatagcga caccccgggc gcactcgaac tcgtccagac aacgcgcgac
      721 gcgctgatcg ccaacgacat ccgcattgcc gcgccgcaac tggcttcccc caatagcttc
      781 cgatccgcct gagacaggag tacggccatg gccctgcacg acattgtcag tcctttgccc
      841 gggacgttct acaggcgtcc atcccccgac gccgcgccgc tcgtcgagat cggaagcgag
      901 attgatgagg gcacgaccgt gggactagtc gaagtcatga agcaattcag cgaaatcgaa
      961 gcaacctcca agggtcgcgt gaccgagata cttgctgaag acggcgagcc ggtcgatgcg
     1021 ggtcaggtgc tgatgcggat cgaggggtaa gccgatgtcc tcagagacct tctacaagcc
     1081 tcagcgcatt cgcaccttac tggtcgccaa tcgcggtgag atcgcggtac gagtcatccg
     1141 cgcggcgcac gaactgggca tgcgtgcggc cgtcacggtt agcgacgctg accgtgacag
     1201 tctggccgcg cgcatggccg accaggccgt gcccatcggc tcggcgcacg ccgccaaaag
     1261 ctacctcaat cctgacgcca ttctcgaagc agccagacaa tgcggcgcgg atgcgattca
     1321 tcccggatac ggatttttat cggagaacgc agcgttcacg gagaaggtcg agaacgccgg
     1381 gctgatcttc gtcggcccgt cttcatccat catcgcgatg atgggcgata aagcccgggc
     1441 gcgtgccacc gcgcaacgcg caggcgtgcc gaccgtgccg ggcagcgagg gcgttctcga
     1501 ttcactcgag caggcgcgcg acgttgccgg cggcattggt tatccggtca tgatcaaggc
     1561 cgctgcgggc ggcggcggac gcggcattcg cgtggcgcac gatgcggcgc agctggatgt
     1621 cgaactaccg ctcgcgcaac gtgaggccct cgcggcattc ggtaacgccg gcgtctatct
     1681 ggagcgcttt atagggcgcg cgcgccatat cgaggtacag gtgctgggcg atggcaaaaa
     1741 cgtcgttcat ctgttcgagc gcgagtgctc cctgcaacgg cgtcggcaga aaatcatgga
     1801 ggaggcgccg tcgccctcac tgacgccgga actgcgcgca tcgttatgcg aatcggcgac
     1861 gcggctggcg cgtgaagtcg gataccgaag cgcgggcacg cttgaatacc tgttcgacga
     1921 aacacgcggc gagttttact tcattgaaat gaacacgcgc attcaggtcg agcatccggt
     1981 gaccgaagcg ataaccggca ttgacctcgt gcgagaatcg ct
//
LOCUS       DATGBK010001409         3226 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_63165, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001409 DATGBK010000000
VERSION     DATGBK010001409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63165"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1603)
                     /locus_tag="VKJ77_19660"
     CDS             complement(<1..1603)
                     /locus_tag="VKJ77_19660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4158 domain-containing protein"
                     /protein_id="HMC47544.1"
                     /translation="MKAAFTPSAAEIRFVRRQSRQEASAVLIMVQLKLLQRLGYFPML
                     VDVPPVIIDHIRSAMRARTLSRAAIARYDVSGTRIRHQKLLHRWLDIRAFDASETAWL
                     TELASSEVRTKIELPDLINVLIEELVRRRYELPSLATLQRIATQARNDFNEAIYGAIA
                     GALDATLIERIDTLLVVKAGKSGWDDLKQEPKRPAARAIASFLKHINGIRKLAEGLPA
                     PPAILSVSKGAQLVTEARALDVAELRSLKTAKRHALAVLFIQAQLQKALDDIAEIFIK
                     VVRKLESYAKVRLRKYQLEHTDVLEGLVGQFRDVLQILQDEEVSERERLPKIRGTLGD
                     PTEALAQCNEHIAYAGQFDLPFMLVPYRNQRSLLFQCLDGLPLRSSSQDRSVLVALAW
                     LQGFRNAHREYLLLTENDLANLPLDWLPEKWERAVFPHGRDSRMLHRRFFELGVFSQI
                     MRELNAGDLYVEGSDRFDDYRVHQVSDEEFRRELPRYCEIVGLPTDGKTFAKDLRDKL
                     NAALDETDANFPANDSIEFVDQELVI"
     gene            complement(1672..>3226)
                     /locus_tag="VKJ77_19665"
     CDS             complement(1672..>3226)
                     /locus_tag="VKJ77_19665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006413562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage integrase family protein"
                     /protein_id="HMC47545.1"
                     /translation="LEGGQSARGVIGRIRRQLASFALSRHRADLARLFQCAVGERTRY
                     RKAATRALDILPALAVPQPQVSDPIGAWLSPRVVPVLHQYGIRTLADLTVRIPRRRRW
                     WRTIPGLGVRSAHHIETFFAAHPALTESARALIVMTTPEFVVPWESIRVPHEVDGSRG
                     AFRAPKPMCALEADNDYQAISAWLERHEAAETQRAYRREAERLLLWAIVERGKALSSL
                     TSEDATAYRAFLRHPTPRVRWIAPSRPRSLPDWRPFTGALSPDSIAYALSVLGAMFRW
                     LIEQRYVLTNPFAGLKVRGAQRTGQLDISRAFTAGEWELIRTLADGLEWSHGWTVPAA
                     QRLRFLLDFGYATGLRAGELVGVVLGGIINGTHGEQWLHLTGKGAKAGKVALPPLARF
                     ALDQYLMQRGLPVSPARWALDTPLLGHLDEPGGITTPRLREVLRRFFRTAADAIQADH
                     PALADKLQRATPHWLRHTHATHALANGATLTTVRDNLRHASITTTSIYLDDDEVQRTR
                     QIERIFTRR"
BASE COUNT          583 a         1013 c         1035 g          595 t
ORIGIN      
        1 gaatgaccag ttcctgatcg acgaactcga tgctgtcgtt tgccgggaaa ttcgcatcgg
       61 tctcgtcgag cgccgcgtta agcttgtctc gcagatcctt cgcgaaggtt ttgccgtctg
      121 tgggcaagcc cacgatctcg cagtagcgcg gcagctcacg ccgaaattcc tcatcagaga
      181 cctgatgcac ccgataatcg tcgaagcgat cactaccctc gacgtaaaga tcgccggcat
      241 ttagctcccg catgatctgg ctgaagaccc ctagctcgaa gaaccgacgg tgcagcatcc
      301 ggctatcccg gccgtgcggg aacaccgcgc gctcccattt ttccggaagc cagtctagag
      361 gcaggttcgc gaggtcgttc tccgtcagca gcaggtattc gcggtgggcg ttccgaaagc
      421 cttgtagcca cgcgagtgcg accagtaccg aacggtcctg cgaactcgat cgcagcggca
      481 gcccgtccaa gcactggaac agcagcgagc gttggttgcg gtatggcacg agcatgaatg
      541 gcaggtcgaa ctgcccggca taggcgatgt gctcgttaca ctgcgcgagc gcctccgtcg
      601 ggtcgccgag cgtcccgcgg attttcggca accgttcgcg ttccgatacc tcttcatcct
      661 gaaggatctg caggacgtcc cgaaactggc cgaccagtcc ctccagtacg tcggtgtgtt
      721 cgagctgata ttttcgcagc cggaccttcg cgtaggactc caacttgcgc accaccttga
      781 tgaagatctc ggcaatatca tcaagcgcct tctgcaactg cgcctggatg aacaggacag
      841 cgagcgcatg acgcttcgcg gtcttgagtg agcgcagttc cgcgacgtcg agcgcccgcg
      901 cttcggtgac cagttgggcc cccttgctga cagacaggat cgcgggtggc gccggcaaac
      961 cttccgccag tttcctgatc ccgttgatat gtttgaggaa gctggcaatc gcccgcgcgg
     1021 ctggtcgctt cggctcctgt ttcagatcgt cccatccaga cttgccggcc ttgacgacga
     1081 gaagcgtgtc gatccgttcg atgagtgttg catcgagtgc gccggcgatg gccccataga
     1141 tcgcttcgtt gaaatcgttg cgcgcctgcg tggcgatgcg ctgcagcgtc gctagcgacg
     1201 gcagctcata ccggcgtcgg accaattcct cgatcagcac gttgatgaga tctggtagtt
     1261 cgatctttgt ccgaacttcc gacgacgcga gttcagtaag ccacgctgtc tcgctcgcgt
     1321 cgaacgcccg gatgtcgagc cagcggtgca gcagcttctg gtgacggatg cgggtgccgg
     1381 acacgtcgta ccgcgcgatc gccgctcggg acagcgtacg ggcgcgcatc gcacttcgga
     1441 tgtgatcgat aatgacgggc ggcacatcca cgagcatcgg aaagtaaccg agacgctgca
     1501 gcagcttcaa ctgcaccatg atcaggaccg cactggcttc ctgccgggat tgccggcgca
     1561 cgaagcggat ttccgcggca ctcggggtga acgctgcttt caactccgcc gcgccgggtt
     1621 ctgcaggcag caccggatag atggtctcgt ggacggtgct catactggcg gttatcgtcg
     1681 cgtaaaaatc cgctcgatct gccgggtacg ctggacttcg tcgtcgtcca aatagatcga
     1741 ggtggttgtg attgacgcgt gacgtaggtt gtcgcgcaca gtcgttagcg tcgcaccgtt
     1801 ggccagtgcg tgtgtcgcgt gcgtatgccg caaccagtgt ggcgtcgctc gctgcagctt
     1861 gtcggcgagc gcgggatggt cggcctggat ggcgtcggca gcggtccgga agaaccggcg
     1921 cagcacctcc ctaaggcgtg gtgtggtgat gccgccgggt tcatcgagat ggccgagcag
     1981 cggcgtatcc aatgcccatc gtgcgggact cacgggcaga ccgcgctgca tcaggtactg
     2041 gtccaacgca aagcgcgcga gcggcggtaa tgccaccttg ccggccttcg cacccttacc
     2101 ggtgaggtga agccactgct cgccgtgcgt gccgtttatg atgccgccga gcaccacgcc
     2161 gaccagctcg cctgcgcgca ggccggtcgc gtaaccaaag tcgagcagga agcgcaggcg
     2221 ctgcgcggca ggtaccgtcc agccatgcga ccactcgagc ccgtcggcaa gcgtccggat
     2281 cagttcccat tcgccggcgg tgaaggcgcg cgagatgtcc agttgaccag tgcgctgcgc
     2341 gccgcgtacc ttgaggcccg cgaacggatt cgtcagcacg tagcgttgtt cgatcagcca
     2401 gcggaacatc gcgccgagca ccgacagcgc gtaggcgatg gaatccggcg atagcgctcc
     2461 cgtgaaggga cgccaatctg gcaacgatcg cggccgagac ggggcgatcc agcggactct
     2521 cggtgtgggg tgacgcagga aagcacgata agcggtcgca tcctcgctgg tcagcgaaga
     2581 cagcgccttg ccgcgctcaa cgatcgccca gagcagcagg cgctcggctt cacgacgata
     2641 ggcgcgctgc gtttcggcgg cctcgtgtcg ttcgagccaa gcgctgatcg cctgatagtc
     2701 gttatcggct tcgagtgcac acatcggctt tggtgcgcgg aaggcgccgc gcgaaccgtc
     2761 aacttcgtgc ggcacgcgaa tgctttccca cggcaccacg aactccggcg tcgtcatcac
     2821 gatcagcgcg cgggcgcttt cggttagcgc cgggtgggct gcaaagaagg tttcaatatg
     2881 atgtgcactg cgcacaccga gtccgggaat cgtgcgccac cagcgccggc gtcgggggat
     2941 gcgcaccgtc aaatcggcca gcgttcggat gccatactga tgcagcacgg ggacaacgcg
     3001 aggcgacagc caggcaccga tcggatcgct cacctgcggt tgcgggaccg caagcgccgg
     3061 caggatgtcc agcgcccgag tcgcggcctt gcggtaacgg gtccgttcgc ccaccgcgca
     3121 ctgaaacagc cgggccaaat cggcgcgatg ccggctgagg gcgaaactgg cgagctgccg
     3181 acgaatccgg ccgatcacgc cgcgcgccga ctggccgcct tcgagc
//
LOCUS       DATGBK010001410         2853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_247948, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001410 DATGBK010000000
VERSION     DATGBK010001410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247948"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..256
                     /locus_tag="VKJ77_19670"
     CDS             <1..256
                     /locus_tag="VKJ77_19670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HMC47546.1"
                     /translation="ELVRESMLTSHRLVDYDNDVEANLLAQHQAIFDAILARDPQRAR
                     EAAGAHLDYVSTLYRDRLPRLPKPEATRHPAKNQNPETTP"
     gene            253..1314
                     /locus_tag="VKJ77_19675"
     CDS             253..1314
                     /locus_tag="VKJ77_19675"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HMC47547.1"
                     /translation="MIISSAHWGDLADGTPVDLHTLSHDNGLRVTVTNLGASLVSWFA
                     PDRNGHLADILLGHDTPAAYTTGPAYMGAIVGRWANRIADARFSLDGVEYQLEANQPP
                     NSLHGGFQGFSYKLWQAQHKEDALVLRLESPAGDSGFPGALTVQVTYAFNDAGELTIT
                     YDAFTDAPTPLNLTNHAYFNLSGVDSTTISDHEIELAADQFFAIDEHTIPTHLEDVAD
                     TPFDFRTAALLGPRLDTRDNEQVTLAGGGIDHCYVLRTTAPVTELPEVRRVAAVYHPG
                     SGRELIVSTTERGLVFYTSNSLEGVPGKRGVTYHKHGALCLEAGGFPNQINMDDAEDV
                     VLRPNERYRQITRYAMRVR"
     gene            1636..2118
                     /locus_tag="VKJ77_19680"
     CDS             1636..2118
                     /locus_tag="VKJ77_19680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011656324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CreA family protein"
                     /protein_id="HMC47548.1"
                     /translation="MKRAIFALTYLTSFAALLAAPALHAEEIASVNTNFRFTGSDRVS
                     VEAYDDPAVAGVTCYVSRARTGGVKGTLGIAEDPSEASIACRQVAAIKIDAPLKQKSD
                     VFSERMSFIFKTLHVVRIVDAKRNTLVYLTYSDRITTGSAKNSVTAVPMPAGTTIPVK
                     "
     gene            2287..>2853
                     /locus_tag="VKJ77_19685"
     CDS             2287..>2853
                     /locus_tag="VKJ77_19685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011351379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4088 family protein"
                     /protein_id="HMC47549.1"
                     /translation="MGQITLSFKDETIAALRRDFDTFIRLSLKFDPQFITPTFEDFLR
                     AKLLDNPTPLTELAVQRMLQNGQYAWAKRALDKEFPDVVEMMMRQAAEHGFGFAVRSD
                     WKPDDLVKASRAWATAIVTEANGDPTQIDTLASQIKEAASDIQELEMKMQTPAWRLAD
                     SLRQRVYETKIATEHSVGSTSREKLGELR"
BASE COUNT          615 a          910 c          798 g          530 t
ORIGIN      
        1 cgagctcgtg cgcgaatcga tgctgacatc gcacaggctg gtcgactacg acaacgacgt
       61 cgaagcgaac ctgctggcgc aacaccaagc catcttcgat gccatcctcg ctcgcgatcc
      121 gcaacgcgcc cgcgaagccg caggcgccca ccttgactac gtcagcacgc tttatcgcga
      181 ccgcttaccc cgcttaccca agccggaagc aacccgccat cctgcaaaaa atcagaatcc
      241 ggagaccaca ccatgattat ttccagcgcc cactggggcg atctcgcgga cggtacgccc
      301 gtcgatcttc acacgctcag ccatgacaac ggcttgcgag taacggtgac gaatctgggc
      361 gcgtccctcg tctcctggtt cgcgccggat cgcaacggcc atctggcgga tatcctgctc
      421 ggccacgaca cccccgccgc gtacaccacc ggtcctgcct acatgggcgc gatcgtcgga
      481 cgctgggcga accgcatcgc agacgcacgc ttttccctgg atggcgtgga gtaccagctc
      541 gaagccaatc agccgccgaa ctcactgcac ggcggcttcc agggcttcag ctacaaactc
      601 tggcaggcgc agcataagga agacgcgttg gtcctcaggc tggaatcgcc tgccggcgac
      661 agtggtttcc ccggcgccct caccgtccag gtgacgtacg cgttcaacga cgcgggcgaa
      721 ctgacgatca cctacgatgc cttcacggac gcacccacgc cgctcaatct cacgaatcac
      781 gcgtacttca acttgtcggg cgtggactcg acgactatca gcgaccacga gatcgagctc
      841 gccgccgacc agtttttcgc catcgacgaa catacgattc cgacccatct ggaagacgtc
      901 gccgataccc ccttcgactt ccgcacggcc gcgcttctcg gaccgcgtct cgatacgcgc
      961 gacaacgagc aagtcacgct cgcgggcggc ggtatcgacc attgttatgt tttgcgcacc
     1021 acagcgccgg tcaccgaact gccggaagtg cggcgtgtcg cggccgttta tcatccgggc
     1081 agcggacgcg agctgattgt ctcaaccacc gaacgcgggt tggtgttcta caccagcaac
     1141 agtcttgaag gcgtgccggg caagcgcggt gtgacctatc acaagcacgg cgcgctctgt
     1201 ctcgaagcgg gcgggtttcc gaaccagatc aatatggacg acgcggaaga cgtcgtgttg
     1261 cgccccaacg agcgatatcg gcaaatcacg cgctacgcca tgcgcgtgag gtaaaaacgt
     1321 gccacccgcc atgccgtcga taggaccccg cctacagtcg aataggacgc tcgcgggtat
     1381 cggcgggccg atctctcatc gatactggac tcatcgaatc agagatcgaa tggaggaaga
     1441 caatgcctta tctactgggg tggctgcttg gtgtgccggt gatcgtgttg gtgatcctgt
     1501 atctgatctt tcactgatga tctttcactg agcacggaac gcgaaagcgc gctggacgcg
     1561 gtttcacgtg aattgaacga aggcgtcgtt acaatacgac gcctttttta attcctcact
     1621 ccccgaagga ttccgatgaa acgcgctatc ttcgctttga cgtacctgac atcgttcgct
     1681 gcgttgctcg ctgcgcccgc cctgcatgcc gaggagatag ccagcgtcaa cacgaatttc
     1741 cgctttaccg gctcggatcg ggtctcggtc gaggcgtacg acgacccggc agtcgcgggc
     1801 gtcacgtgtt acgtctcccg cgcgcgcacg ggcggtgtta aaggaacgct tggaatagcc
     1861 gaagacccgt ctgaggcatc aatagcttgc cgccaggtcg cggcaatcaa gatcgacgcg
     1921 cccctcaagc aaaaatccga tgtattctcg gaacgcatgt cgtttatttt caagacgctg
     1981 catgtggtgc gtatagtcga tgccaagcgc aatacgctgg tttatctgac atacagcgat
     2041 cggattacga ccggcagtgc gaagaacagc gtgacagccg tgccgatgcc cgcaggtacg
     2101 accattccgg tcaaataaga cgggagcgcc gcctaatcgg cctctgattg cacgggtcga
     2161 accaagccta aagtttcccg tctccgcgcc gatataaaga cgaacggccg tcgccctcat
     2221 ggcgcgccga cttgtcttcc cgcgccggct caaccccgtc agcgggatcg ggaaccggga
     2281 aacatcatgg gtcagatcac cctttcattt aaagacgaaa caatcgcggc gctacgccgc
     2341 gacttcgata catttattcg tctgtcgctc aagttcgacc cgcaattcat cacgcccacg
     2401 ttcgaagatt tcctgcgcgc aaaactgctc gacaacccca cgccgctcac cgaactggca
     2461 gtccagcgaa tgctgcaaaa cggtcagtac gcgtgggcaa aacgtgctct cgacaaggaa
     2521 ttcccggacg tcgtggaaat gatgatgcgt caagccgcgg aacacggttt cggtttcgcc
     2581 gtgcgctcgg actggaaacc ggacgacctc gtgaaggcat cgcgcgcgtg ggccacggct
     2641 atcgtgaccg aagcgaacgg cgacccgacg cagatcgaca cgctagcgtc ccagatcaag
     2701 gaagcggcat cggacatcca ggagctggag atgaaaatgc agacgcccgc atggcgtctc
     2761 gccgattcac ttcgtcaacg cgtgtacgaa accaagattg cgaccgaaca cagtgtggga
     2821 tcgacgtcgc gcgagaagct cggtgaactg cgc
//
LOCUS       DATGBK010001411         3174 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_132110, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001411 DATGBK010000000
VERSION     DATGBK010001411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3174
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132110"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..526
                     /locus_tag="VKJ77_19690"
     CDS             <1..526
                     /locus_tag="VKJ77_19690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC47550.1"
                     /translation="PFVSLYWMVSGCTVGGMQMYAPQDRLDRMEALRRYTVGSSWFSG
                     EEERKGALVPGQFADFAALTDDYFTVDETRIKYLSSVLTVVNGKVVHADAEFSALGPP
                     PLPVSPSWSPVAEFGGYSRYQPGTIVQQACADGCANLCGIHAHGHMWAWRKQVPVSDT
                     NGFWGALGCSCFAF"
     gene            599..1240
                     /locus_tag="VKJ77_19695"
     CDS             599..1240
                     /locus_tag="VKJ77_19695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HMC47551.1"
                     /translation="MTKRIAGIAIPDSEMARAAAAATRAIEPDILYRHSSRVFLFAAL
                     IGVRRQLVFNAELLYVAALFHDMGLTTLYRESQLRFEVDSANAVKDFLGGYGVPDDDV
                     ADVWNAIALHTTFGICSHMSALTGLVAAGIETDLLGMHFDEVGRVERNAVLVEYPRGT
                     GFKEQIIDVFAQAMANRPATTFGTVNADVLECCDPNYRRMNFCGLILGSDWKE"
     gene            1290..1535
                     /locus_tag="VKJ77_19700"
     CDS             1290..1535
                     /locus_tag="VKJ77_19700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013339359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1427 family protein"
                     /protein_id="HMC47552.1"
                     /translation="MPYLISLAAGFVVGLLYCLVRVQSPAPPLIALAGLLGIVLGEHT
                     IPVVRAHLFPESVQVQQLETPATVKPGPSADPGSGTK"
     gene            1611..2546
                     /locus_tag="VKJ77_19705"
     CDS             1611..2546
                     /locus_tag="VKJ77_19705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase"
                     /protein_id="HMC47553.1"
                     /translation="MSRISVSRLAAAVAFACVLLGTASAPGVVQAAAELKPASASTNV
                     SVGPQYDTTHVYVSNEDIDAFVNSFLATFGGKASPRAVFTVTPTPSKTASQYVQTPVG
                     MLSVFAFQTPIPYPFGDERTGYLVTDMDQAVHAARAAGADVTVEPFDDPIGKDALIRW
                     PGGLNMQLYWHTKAPSYGPLESVPDNRVYMSRFAVDGFVRRFVRFSQGKVVSDDRHAD
                     AGVIGRPGETMRCIRIESGFGKMVVFVTDGKLPFPFGRETTGYQVTDLAATLAKAEAA
                     GAKVVFAPYQTGKGKTSIVEFPGGYIAEIHDTTAQ"
     gene            2543..>3174
                     /locus_tag="VKJ77_19710"
     CDS             2543..>3174
                     /locus_tag="VKJ77_19710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate export family protein"
                     /protein_id="HMC47554.1"
                     /translation="MTQTRRSGRSRRLLALSGFTLAVSASGAAMDARAASDAGDAQQP
                     APTPVATCDAKRPAVLFNRWQEDWSVLANPCVPREPLDGLKYMPLGSDPASYLSLGAN
                     LRERLEVNNAALFGVGANHGDTYLLQRAEVHADIRLGDHLQIFAQIEDAQPYGKDSVS
                     PVDKNPLDLEQAFITYVGALGGGTFKFRLGRQEMAFDLQRFISVRDGPNVR"
BASE COUNT          564 a          920 c         1030 g          660 t
ORIGIN      
        1 tccgttcgtg tcgctgtact ggatggtgtc gggctgcacg gtcggcggta tgcagatgta
       61 cgcaccgcag gaccgcctgg accggatgga agcgctgcgc cgctatacgg tgggcagcag
      121 ctggttctcg ggcgaagagg agcgcaaggg cgcgctggtg cccgggcagt tcgcggactt
      181 tgctgcgctc accgacgact atttcacggt cgatgaaacg cggatcaaat acctgtcgtc
      241 agtgctgacc gtagtcaatg gaaaggtggt gcatgcggac gccgagttca gcgcgctcgg
      301 accgccgccg ttgcccgtta gcccgtcgtg gtcgccggta gcggagttcg gcggttatag
      361 ccgataccag cccggcacga tcgtccagca ggcgtgcgcc gacggctgtg caaacctgtg
      421 cggcattcat gctcatggtc acatgtgggc gtggcgcaaa caggtgccgg tcagcgatac
      481 aaacgggttt tggggtgcgc ttggctgcag ttgttttgcg ttctgaaacg tcgatgaatt
      541 aaggacgatt caggttgctt gagcagaggt gatggcaggc cgaggcaagg agatggcgat
      601 gaccaagcgc atcgcgggaa tcgcgattcc agacagcgag atggcgcgtg cggctgctgc
      661 tgccacgcgc gctatcgagc cggatattct ctatcgccat tcatcgcggg tattcctgtt
      721 cgcggcgctg atcggcgttc gcaggcagct cgtcttcaac gccgagttgc tgtacgtggc
      781 tgcgcttttt cacgacatgg ggctgaccac gctttaccgc gagtcccagt tgcgcttcga
      841 agtggacagc gccaatgcgg taaaggactt tcttggcggt tatggcgtac ccgacgacga
      901 tgtcgccgat gtctggaatg cgatcgcgct gcacacgacg ttcggcatct gctcgcacat
      961 gtctgccttg acgggactgg ttgcagccgg gatcgaaacg gatctgctcg gcatgcattt
     1021 cgatgaggtc ggccgcgtgg agcgcaacgc ggtgctggtc gaatatccgc gtggcacagg
     1081 tttcaaggaa cagatcatcg acgtgttcgc gcaggcgatg gcgaaccgtc ctgcaaccac
     1141 attcggtaca gtcaacgccg acgtgctcga gtgctgcgat cccaactatc gacgcatgaa
     1201 tttctgtggc ctgatcttgg gctccgactg gaaagagtag ctttggatgc tttattggct
     1261 tcgatagatt ttagacaaga ggcttgacga tgccttatct tatttcgctt gcggcaggct
     1321 tcgtggtcgg cctgctgtat tgcctggtgc gcgtgcaatc gcccgcacca ccgctgattg
     1381 ctctcgcagg attgctgggt atcgtgcttg gggagcatac gatacccgtg gtgcgtgctc
     1441 atctgttccc ggagagcgtt caggtccagc aactggagac gcccgcaaca gtgaaacccg
     1501 ggccgtccgc cgacccggga agcggcacca agtaaatcaa acgcacgctg cttgttagcg
     1561 ctgtcttatc tccctttata ccgaatagaa actagaaaca ggagcttttc atgtcgcgca
     1621 tttccgtctc tcggctcgcc gccgcagtcg ccttcgcctg cgtgttgctt ggtacggcga
     1681 gcgcacccgg cgttgtccag gccgcggccg aactcaagcc cgcgtcggcg agcacgaacg
     1741 tatccgtcgg tcctcagtac gatacgaccc acgtgtatgt gtccaacgaa gatatcgacg
     1801 cattcgtcaa cagcttcctg gcgaccttcg gcggcaaggc ttcgccgcgt gcggtcttca
     1861 ccgtgacgcc gacgccgagc aagaccgcgt cgcaatacgt gcagacgccg gtcggcatgt
     1921 tgtccgtgtt tgctttccag acaccgatcc cgtatccatt cggcgatgag cgtaccggct
     1981 atctcgtgac cgacatggac caggccgtgc acgcggcccg cgccgcgggc gcggatgtga
     2041 ccgtcgagcc gttcgacgac ccgatcggca aggacgcgct gatccgctgg cctggcggct
     2101 tgaacatgca gttgtactgg catacgaaag cgccgtcgta cggaccgctt gaatcggtgc
     2161 cggacaatcg cgtgtacatg tcccgttttg ccgtcgatgg cttcgtgcgc cggttcgtgc
     2221 ggttttcgca aggcaaggtg gtctccgatg accggcatgc ggatgccggc gtgattggtc
     2281 gtccaggcga gaccatgcgc tgcatccgga ttgaatcggg cttcggcaag atggtggtgt
     2341 tcgtgaccga cggcaagctc ccgtttccgt tcgggcgcga gacgaccggc taccaagtga
     2401 ccgacctcgc ggcaacgctc gcgaaggccg aggcggcagg cgccaaggtg gtgtttgcgc
     2461 cgtatcagac gggcaagggc aagacgtcga tcgtcgagtt ccctggcggg tatatcgccg
     2521 agattcacga cacaaccgct caatgacgca gacgcgacgt tcgggacgtt cgcgacgatt
     2581 gttggcgctt tcgggcttca cgctggcggt gagtgcgagc ggcgcggcaa tggacgctcg
     2641 cgctgcatcg gatgcgggcg atgcacagca acctgcgccc acgccggtgg cgacttgcga
     2701 cgctaaacgc cccgcggtct tgttcaatcg atggcaagag gactggtcgg tgctcgcgaa
     2761 tccgtgcgtg ccgcgcgagc cgctggatgg cctcaagtac atgccgctgg gtagtgatcc
     2821 ggcgtcgtac ctgtcgctcg gtgcgaacct gcgcgagcgg ctggaagtca acaacgccgc
     2881 gttgttcggg gtcggtgcga accatggcga tacgtacctg ctgcaacgcg ccgaagtaca
     2941 cgccgatatc cgactcggtg accacctgca gatcttcgcg cagattgaag atgctcagcc
     3001 ttacggcaaa gactcggtgt cgccggtcga caagaacccg ctcgatctcg agcaggcgtt
     3061 catcacttac gtcggagcgc ttgggggtgg cacgttcaag ttcaggctgg gacgtcagga
     3121 gatggcgttc gacttgcagc gcttcatttc ggtccgtgat ggtccgaatg tccg
//
LOCUS       DATGBK010001412         1819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_340570, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001412 DATGBK010000000
VERSION     DATGBK010001412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340570"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..388
                     /locus_tag="VKJ77_19715"
     CDS             11..388
                     /locus_tag="VKJ77_19715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4399 domain-containing protein"
                     /protein_id="HMC47555.1"
                     /translation="MLSSVFLVAVAVHAQQARVFFVEPKDGATVTSPVHVVFGLEGMA
                     LAPAGDTDPQKGHHHLLIDAGPMQKGLVIPMNDKSLHFGKMQTEADVKLPPGDHTLTL
                     QFGDGAHQSFGPEMSQTIKIHVK"
     gene            589..>1819
                     /locus_tag="VKJ77_19720"
     CDS             589..>1819
                     /locus_tag="VKJ77_19720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012364399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47556.1"
                     /translation="MSLYSISNAQLAFGHVALLDHADFSLEAGERVGLIGRNGAGKSS
                     LLKIIAGLTKPDDGLITRQNELTTVYVPQEPEFDLDASVFDVVASGLSHERELLDEYD
                     VVAHKLADTPEGPEHDDLLHRMNALQSSLDLHDAWSWQTRVATTLQQIGLDGDVRSGA
                     LSGGMKKRVALARALVVQPDVLLLDEPTNHLDFDGIRWLEEMLVTLRTGLLFITHDRA
                     FLDKVATRIVDLDRGRLLSYPGNYSAYQTRKAQQLEIEQVEAAKFDKLLAQEEVWIRK
                     GVEARRTRSVGRIARLVEMRNERAERRNVLGNVKLDVGQGERSGKIVSELTDVTKKYG
                     DRTIVDNFSATVMRGDKFGFIGPNGAGKTTLLKMILGELAPDTGTVRTGTNTQVAYFD
                     QMRAQLDLDKTLADTISP"
BASE COUNT          358 a          565 c          572 g          324 t
ORIGIN      
        1 gtcgggagcg gtgttgtcga gcgttttcct tgtggccgtt gcggtgcacg cgcaacaagc
       61 ccgggtgttt ttcgtcgaac cgaaagacgg cgcaaccgtc acaagccctg tgcatgtggt
      121 cttcggcctg gaaggcatgg cgctcgcgcc ggccggcgat acggatccac aaaaaggcca
      181 ccaccatctg ctgatcgacg caggcccgat gcaaaagggt ctcgtgattc caatgaacga
      241 taaatcgctg catttcggca agatgcagac ggaagcggac gtgaaactgc ccccgggcga
      301 tcacacgctg acgctgcaat ttggcgacgg cgcacaccag tcttttggac cggaaatgag
      361 ccagacgatc aaaattcacg tgaaataacg gccctcgggc cgggattcat cggtcggcgc
      421 cgggccgctc tggctttggc gctcatctca aaaacgcggc gcggccgcgt tttttttgcg
      481 gcttatcggg cagcttgcct tgtcctgatg gcatagggcc tccaagcgcg ccggtcaaga
      541 ccggtacaat ggccgcttcc agtatttgca cttttccggc tgcctcccat gtcgctttat
      601 tccatttcga acgcgcaact cgcgttcggc cacgtcgcgt tgctcgatca cgctgacttt
      661 tcactcgaag cgggcgaacg cgttggcctc atcggccgaa acggcgcggg caagtcgtcg
      721 ctgctgaaga tcatcgccgg gctgaccaag ccggacgacg gcctcatcac gcgccaaaac
      781 gagctcacta ccgtctacgt gccgcaggaa cccgagttcg acctggatgc gtcggtgttc
      841 gacgtcgtcg cgtccggctt gtcccatgag cgggagctgc tcgacgaata tgacgtcgtg
      901 gcgcacaaac tcgccgatac ccccgaaggt cccgagcacg acgacctgct gcaccgcatg
      961 aacgcgctgc agtcctcgct cgacctgcac gacgcctgga gctggcaaac ccgcgtggcg
     1021 accacgctgc agcagatcgg gctggacggc gacgtgcgtt cgggcgcgct ctcgggcggc
     1081 atgaaaaagc gcgtggcgct ggcgcgtgcg ctggtcgtgc aaccggacgt gctgctcctg
     1141 gacgaaccga ccaaccacct cgacttcgac ggcattcgct ggctggaaga aatgctggtc
     1201 acgttgcgca cgggtttgct gttcatcacc catgaccggg ctttcctcga caaggtcgct
     1261 acccgcatcg tcgatctgga tcgcggacgc ttgctgtcgt atccgggtaa ttacagcgcg
     1321 taccagacgc gcaaggcgca gcagcttgag atcgaacagg tcgaagcggc caagttcgac
     1381 aagttgctgg cgcaggaaga agtgtggatt cgcaaaggcg tggaggcgcg acggacgcgc
     1441 agcgtcgggc gtattgcgcg cctggtggaa atgcgcaatg agcgcgccga acgccgcaac
     1501 gtgctgggca acgtgaagct ggatgtcggg caaggcgagc gctcgggcaa gatcgtctcg
     1561 gaactgaccg acgtgacgaa gaaatacggc gatcgaacga tcgtcgacaa cttctccgcg
     1621 accgtcatgc gcggcgacaa gttcgggttc atcggtccga acggcgccgg caagaccacg
     1681 ctgctcaaga tgatcctggg cgaactcgcg ccggacacgg gcacggtgcg caccggcacg
     1741 aacacgcagg tggcgtattt cgaccagatg cgcgcgcagc tcgacctcga caagacgctt
     1801 gccgacacca tcagccccg
//
LOCUS       DATGBK010001413         2078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_225304, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001413 DATGBK010000000
VERSION     DATGBK010001413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225304"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2078
                     /locus_tag="VKJ77_19725"
     CDS             <1..>2078
                     /locus_tag="VKJ77_19725"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HMC47557.1"
                     /translation="EDGALDYLGRLDHQVKIRGFRIEPGEIEAVLQTLPGVDEAVVVA
                     QDGPGGKRLVAYVTARAGHDLQRDALAASLHDVLPEYMVPSAWVELERLPLSPNGKVD
                     RRALPLPSETERVWEAPQGDIESVLARIWQDVLGVERVGRDDNFFELGGDSILSLLIV
                     ERVRLAGWKVTPRQLFERQTVVQLAAVAEPVVAPVVVANAVIQDTTKAFLPMQAWFLD
                     LPMKRRHHWNQAVLLTSREPLDAALLERALRELVQHHDALRLRVTQDAQGRWSLGSQP
                     QSASLLWVREADTPADIETLCDKAQRSLDLGDGPLLRALAINVADGSWRLLLAIHHLA
                     VDGVSWRILLADLRTAYAQLQAGEAVALPPKTTSCHEWATRLVRHARSPALRAQLDYW
                     LDIASTPAGLPCDFPGGANTVAHLLHATLKLDRTWTQRLLQEAPAAYRTHVNDLLLTA
                     LGRALCNWTGGERIRIDLEGHGREDLFDDVDLSRTVGWFTSLYPVSLEPQGDVGTALG
                     RVKETLRRVPDRGLGFGVLKYLGDDADQHALGSIEPSRVVFNYLGQFDQSFDATSVWQ
                     PATEAVGHSQDEGAPLPHDLSISGKVLDGALTLSVGYSGERYRANTVEGLIDAIRVEL
                     KRVIEHCTSGNTGATPSDFELISITQNELDRLPLTLNNVADIYPLSPMQSGMLFHTLY
                     APGSSVYLNQ"
BASE COUNT          378 a          595 c          696 g          409 t
ORIGIN      
        1 gtgaggatgg ggcactcgac tatctcggac ggctcgatca tcaggtcaag atccggggct
       61 ttcgcattga gccgggtgag atcgaagccg tgttgcagac cttgccgggc gtcgatgaag
      121 cggtggtcgt ggcgcaggat gggccgggtg ggaaacggct agtcgcgtat gtgacggcgc
      181 gtgcgggtca tgatctgcag cgcgatgcac tggctgcgtc cctgcacgac gtcctgcccg
      241 aatacatggt gccatccgcc tgggtcgaac tcgagcggct gccgctgtca ccgaatggca
      301 aagtggatcg tcgggcgctc cccctgcctt ctgagacgga acgggtttgg gaagcgccgc
      361 aaggcgacat cgaatctgtg ctcgcgcgga tctggcagga tgttttgggc gtcgaacgcg
      421 ttgggcgcga cgataacttc ttcgagctcg gcggtgattc gatcctgagc ttgctgattg
      481 tggagcgtgt acggctcgcc gggtggaagg taactccgcg gcaattgttc gagcgccaga
      541 ccgtggttca gcttgccgcc gtcgccgagc ccgttgttgc accggtagtc gtcgctaacg
      601 cggtaataca ggacaccact aaggcatttt tgccgatgca ggcatggttc ctcgacctgc
      661 cgatgaagcg gcggcatcac tggaaccagg cagtgctgct gacgagccgc gaaccgttgg
      721 acgctgcgtt gctggagcgt gcattgcgtg agttagtgca gcaccacgac gcgctgcggc
      781 tgcgcgttac gcaggacgcg caagggcggt ggtcccttgg gagtcagccg caatcggcta
      841 gcctgttatg ggtgcgcgaa gcggatacgc cggctgacat cgagacgctt tgcgacaaag
      901 cgcaacgcag ccttgatctt ggtgacggac cgctgctgag agcgctggcg ataaacgtcg
      961 cggacggcag ctggcggctc ttgctggcga tccatcatct ggctgtggac ggtgtgtcgt
     1021 ggcggatttt gcttgcggac ttgcgaacgg cgtatgcgca attgcaggcc ggcgaagcgg
     1081 tcgcattgcc gccgaagaca acttcatgcc atgagtgggc gactcgcctc gttcgccacg
     1141 cgaggagccc tgcgctacgt gcgcaacttg attactggct ggacatagct agcacgccgg
     1201 ctggcctgcc ctgcgacttc ccgggcggtg caaacaccgt tgctcatctg ctgcacgcga
     1261 cgctcaagct tgaccgaacc tggacgcaac ggttgctgca ggaagcgcct gctgcgtatc
     1321 gcacgcatgt caacgacctg ctgctgactg cgctgggccg cgcgctttgc aactggaccg
     1381 gaggggagcg aatccgcatc gaccttgaag gtcacggccg tgaagacttg ttcgatgatg
     1441 tcgacctgag ccgcacggtt ggctggttca cgagcctgta tcccgtctct ctcgagccgc
     1501 agggtgacgt gggaacggcg ctcggtcgcg tcaaggaaac gctgcgccgg gtaccggacc
     1561 gaggcctcgg gtttggcgtg ctcaagtacc tcggtgacga cgcggaccag cacgcgctag
     1621 gcagcatcga accgtcgcgg gtggtgttca actatctcgg ccagttcgac cagagctttg
     1681 atgcaacgtc agtctggcaa cccgcgactg aagcggtggg ccattcgcaa gacgaaggcg
     1741 cgccgttgcc gcatgacctg tccatcagcg gcaaggtgct ggacggtgcg ctcacattga
     1801 gcgtgggcta tagcggcgag cgttatcggg cgaacacggt tgaagggctg atcgatgcaa
     1861 tccgcgtaga actgaaacgg gtgatcgagc actgcacgag cggcaacact ggcgcgacac
     1921 cttcggactt cgaattaatt tcgataacgc agaatgaact cgaccggttg cccctgacgt
     1981 tgaacaacgt cgcggatatt tatccgctgt cgcccatgca gtcgggcatg ttgttccaca
     2041 ccctgtatgc acccggcagc agcgtgtacc tgaatcaa
//
LOCUS       DATGBK010001414         2065 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_202199, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001414 DATGBK010000000
VERSION     DATGBK010001414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202199"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..442
                     /locus_tag="VKJ77_19730"
     CDS             <1..442
                     /locus_tag="VKJ77_19730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013596610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HMC47558.1"
                     /translation="KDGAKLVTAVACAAVPKFTVILGGSFGAGNYGMCGRAYSPRQLW
                     MWPNARISVMGGAQAASVLLTVKMDADKSKNGAFDAAAQEAFKAPILAKYDAEGHPYY
                     STARMWDDGIIDPLDTRRVLAIGLRAARYAPVAPPQHNNGLFRM"
     gene            553..2055
                     /locus_tag="VKJ77_19735"
     CDS             553..2055
                     /locus_tag="VKJ77_19735"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47559.1"
                     /translation="MKFRLWAGLAAILIATAGPARGADTTIVISQGVDADTLDPIRVS
                     VTTSTNIHAQLYNMLARRDRSGKLVPDLATSWRLASPSVWEFKLRHDVQFSNGDPFTS
                     ADVKFTVEKILDPAYKSQQVPRVDTVARVETPDAYTVRMITKKPTPIPPAITRPIFIV
                     DAKYWQAHGDAYMSDHAMGTGPYTLREWKKDEVIALDANPKYFGGAPSIAHVLFKPVP
                     EGAARVAALKTGAADLITNVPFQYTLSLAGGQNTRMTSAKSDRVLFIAFNTLKPGPQN
                     NKLVRQALNYAIDVPAIIKAVLGGRAYELGQVVPPNFFGYDAKLAPYGHDDAKAKALL
                     ARAGFPDGKGLSLTINTPTARYNGDKEVALAVAGQLQKYGIAVDVKPQEWVSYVRQAN
                     QKTLTPMYLFAWGNITYDADNTLASLLASDGSSSAYNNPQLDKLIEAARYELDTGKRA
                     AIYYSIDELLKDDAPWLYLFQYEDLYATTKRLVWDARSDEFIFCADMKVR"
BASE COUNT          448 a          634 c          592 g          391 t
ORIGIN      
        1 aaaagacgga gcaaaactcg tcactgcggt tgcctgcgcg gcggttccca agttcaccgt
       61 gattttgggc ggcagcttcg gggccggcaa ctacggcatg tgcgggcgcg cgtattcacc
      121 gcgtcaatta tggatgtggc ccaacgcgcg catctccgtc atgggcggcg cgcaagccgc
      181 ctccgtgctg ctaacggtga agatggatgc ggataaaagc aagaacggcg cgtttgatgc
      241 cgcggcgcaa gaagcgttca aggcaccgat ccttgcgaag tatgacgccg agggtcatcc
      301 atattattcg accgcgcgaa tgtgggacga cggaatcatc gatccgctcg atacgcgtcg
      361 cgttctcgcg atcggattac gcgccgcgcg ctacgcgccg gtggcgccgc cgcagcacaa
      421 caacggccta ttccggatgt aggaatagcc aggctaaccc cgggctgccg gccgggccgg
      481 cccgggcccc gcatcctgca atttagttag gtggccaaag gcgacggctc gctgtacaag
      541 gtaggtccct gtatgaaatt ccgcctttgg gccggccttg ccgccattct gatcgcaacc
      601 gcgggaccgg cccgcggtgc cgatacgacg atcgtcatct cgcaaggcgt cgacgcggac
      661 acgctcgacc cgattcgcgt ctcggttacg acatccacga atattcacgc gcagctatac
      721 aatatgcttg cgcgacgcga tcgtagcggg aagctcgtgc ccgacctcgc gacgtcgtgg
      781 cgactcgcgt cgccgagcgt gtgggaattc aagctgcgtc atgacgtgca gttttctaac
      841 ggcgatccgt tcacgagcgc cgacgtgaaa ttcacggttg agaaaattct cgacccggcg
      901 tacaaatcgc aacaggtgcc gcgcgtcgat accgtcgccc gagtcgaaac gcccgatgcg
      961 tacaccgttc gcatgatcac aaaaaagccc accccgattc cgcccgcgat cacgcgaccg
     1021 atctttatcg ttgatgcgaa gtattggcag gcgcacggtg atgcgtacat gtcggatcac
     1081 gcgatgggaa ccggccccta tacgctgcgc gagtggaaaa aagacgaagt catcgcgctc
     1141 gatgccaatc ccaaatattt tggcggcgcg ccatcgattg cgcacgttct cttcaaaccg
     1201 gtgcccgaag gcgccgcgcg cgttgccgcg ctcaagaccg gtgcggccga tctaataaca
     1261 aacgttccgt ttcaatatac gctatcgctg gcgggcggac aaaatacgcg catgaccagc
     1321 gcaaaaagcg atcgcgtgtt gtttattgca tttaacaccc tcaagccggg accgcagaat
     1381 aacaagctcg tccgccaagc gctcaactat gccatcgacg tccctgcgat tatcaaagcc
     1441 gtccttggcg gccgcgcgta cgagctgggc caagtcgttc ccccgaactt cttcggttac
     1501 gacgcgaagc tcgcgccgta cgggcacgac gacgccaaag ccaaggcgtt gctggcgcgg
     1561 gccggcttcc ccgacggcaa gggactttcg cttaccatca acacgccgac cgcacgttat
     1621 aatggggaca aagaggtcgc gctcgccgtg gcgggccagt tgcagaagta cggcatcgcc
     1681 gtcgacgtga agccgcaaga atgggttagc tacgtccgac aagcaaatca gaaaacgctc
     1741 accccgatgt atctgttcgc ttggggcaac atcacatacg atgccgacaa tacgctcgcg
     1801 tcgctgcttg catcagacgg ctcgtcttct gcctacaaca atccgcaact cgataaattg
     1861 atcgaagccg ctcgctacga actcgatacg ggtaagcgcg ccgctattta ctattcgatc
     1921 gatgagttgc tcaaagacga tgcgccctgg ctgtatctct ttcagtacga agacctctac
     1981 gccacgacaa agcgtctggt ctgggatgct cgcagcgacg agttcatctt ctgcgcggac
     2041 atgaaagtac gataatgatc ggcga
//
LOCUS       DATGBK010001415         1549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_178376, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001415 DATGBK010000000
VERSION     DATGBK010001415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178376"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..115
                     /locus_tag="VKJ77_19740"
     CDS             <1..115
                     /locus_tag="VKJ77_19740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-dependent dehydratase"
                     /protein_id="HMC47560.1"
                     /translation="VTDMSKSRKAGFLAYQSTLDAFIDLFERLKVERIIPG"
     gene            complement(203..>1549)
                     /locus_tag="VKJ77_19745"
     CDS             complement(203..>1549)
                     /locus_tag="VKJ77_19745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HMC47561.1"
                     /translation="DRTGHALLHTLYQQNVAAKTHFFVEWMALDLIRDADGDVLGVIA
                     MEMETGDVHILEGKTTLFATGGAGRIFAASTNAFINTGDGLGMAARSDIALEDMEFWQ
                     FHPTGVAGAGVLITEGVRGEGGILRNSDGERFMERYAPTLKDLAPRDMVCRSMGQEIK
                     EGRGVGPNKDHLLLDLSHIGPETIMKRLPSIREIAMKFANVDCIKEPIPVVPTIHYQM
                     GGIPTNIHGQVIGTSRDHEEPVNGFYAVGECSCVSVHGANRLGTNSLLDLVVFGRAAG
                     NHIARHVKEIKEHKPLPADAADFALARLDKLDKSTSGEYSQTIANDIRSTMQAHAGVF
                     RTTSLIQEGREKIRELTERTNHVHLKDKSKVFNTARVEALELANLIDAARATVVSADS
                     RKESRGAHANADFPDRDDVDWLRHTLWFSRGDRIDYKPVHMNPLTVESIPPKARTF"
BASE COUNT          288 a          484 c          452 g          325 t
ORIGIN      
        1 ggtgaccgat atgtcgaaga gcaggaaggc aggctttttg gcgtaccaaa gcacgctgga
       61 tgcattcatt gacctgtttg aacggctaaa ggtcgagcgg atcatacccg gatagggcgc
      121 gccaggattc actgcgggag cgctgtgcgg gtcatggcgt tacccgcgtt cctagtccgc
      181 gttcaggcat cctggaccag gctcagaagg tacgcgcttt cggcggaatc gattcaaccg
      241 tcaacgggtt catgtgaacc ggcttgtagt caatgcgatc gccgcggctg aaccacaatg
      301 tatgccgaag ccagtcgacg tcgtcccggt ccggaaaatc agcgttggcg tgtgcaccac
      361 gactctcttt gcgcgagtcc gcggacacaa cggtggcccg tgccgcgtcg atcaggttcg
      421 ccagctccag cgcttcgacc cgcgctgtgt tgaacacctt cgacttgtcc ttcaaatgga
      481 cgtgattcgt gcgctcggtc agttccctga ttttctctcg accctcttga ataagacttg
      541 tagtgcgaaa cacccctgcg tgtgcctgca tcgtcgaacg gatgtcattg gcgatcgtct
      601 gcgaatattc gcccgaagtc gacttgtcta gcttgtcaag acgcgcgagc gcgaaatcgg
      661 cggcatcggc cggcagcggc ttatgctcct tgatttcctt cacgtgcctg gcgatgtggt
      721 tgcccgctgc gcggccgaac accacgaggt ccagcagcga gttcgtgccc aggcggttcg
      781 caccgtgcac cgacacgcac gaacactcgc cgaccgcgta gaagccattg acaggttctt
      841 catgatccct cgacgtgccg atgacctggc cgtgaatatt cgtcggaatg ccgcccatct
      901 ggtaatggat ggtcggcacg accgggatcg gttccttgat gcagtccacg ttcgcgaact
      961 tcatcgcgat ctcgcggatc gacggcagcc gcttcatgat cgtctcggga ccaatgtgcg
     1021 agaggtcaag cagcaggtgg tccttgttgg gtccaacgcc acgcccttcc ttgatctcct
     1081 gtcccatgga acgacagacc atgtcgcgtg gcgccagatc cttcagcgtc ggagcgtagc
     1141 gctccatgaa gcgctcgccg tccgaattgc gcaggatccc gccttcgcct cttacgccct
     1201 cggtaatcag cacacccgca cccgcgacgc cggtcgggtg gaactgccag aactccatgt
     1261 cctccagcgc aatgtccgag cgggccgcca tgccaagtcc gtcaccggta ttgatgaacg
     1321 cgttagtcga tgccgcgaag atccggcccg cgccgcccgt ggcgaacaac gtggtcttgc
     1381 cttcaagaat atggacgtca cccgtttcca tttccatggc gatcacgccg agcacgtcgc
     1441 cgtcggcgtc gcggatcaag tccagcgcca tccattcaac gaagaagtgc gtcttggcag
     1501 ccacgttctg ctgatacagc gtgtgcagca gcgcgtggcc ggtacggtc
//
LOCUS       DATGBK010001416         2520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_340631, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001416 DATGBK010000000
VERSION     DATGBK010001416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340631"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..2399
                     /gene="metG"
                     /locus_tag="VKJ77_19750"
     CDS             252..2399
                     /gene="metG"
                     /locus_tag="VKJ77_19750"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008924243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HMC47562.1"
                     /translation="MSAPTSALAVSAAASATPGHRRILVTSALPYANGQIHIGHMVEY
                     IQTDIWVRSLRMHGHEVYYVGADDTHGTPIMLRAEQEGITPKQLIERVGKEHKRDFDS
                     FGISFDNYYSTDAEENRVLCESIYGSLKAAGLIEARDIEQAYDPVKEMFLPDRFIKGE
                     CPKCGAKDQYGDNCEVCGSTYQPLDLINPYSVVSGATPVRKTSTHYFFRLSDPRCEDF
                     LRGWVSGLAQPEATNKMREWLGDKGDAKLADWDISRDSPYFGFEIPGAPGKYFYVWVD
                     APVGYYASFKNLADARGLDFEEWIRPGSKTEQYHFIGKDILYFHTLFWPAMLEFSGHR
                     TPTNVFAHGFLTVDGAKMSKSRGTFITAKSVIDTGINPEWLRYYFAAKLSHTMEDIDL
                     NFGDFQARVNSDLVGKYVNIASRAAGFLIKRFEGRVLDSAMDHPLLLQLRAALPQIAA
                     LYEAREYGRALRTTMELADAVNAFVDTAKPWDQAKDEANSAALHETCSVSLEAFRLLS
                     LALKPVLPLLAQSVEGFLGIAPLVWADVSVPLSSSQPINAYKHLMTRVDPKQVEALIA
                     ANRESVAPGQAVAAAPAAASTSSSKKAAKVKEPEAEGVISIDDFAKVDLRIAKIVNCT
                     AVEGSDKLLQLTLDVGEEKTRNVFSGIKSAYQPQDLIGKFTVMVANLAPRKMKFGLSE
                     GMVLAASSDDEKAEPGLYILEPHSGAKPGMRVK"
BASE COUNT          509 a          773 c          751 g          487 t
ORIGIN      
        1 ttaacggtag gtggctggct ttgccgccac gtgccattct cctcttgtcg ttgttgctcc
       61 ggggccgcta atcgccccgg ttttttttcg cctggatttt ggcaggggaa acgccggcca
      121 accccggccg cccttcccag cactccatcc ccgcccccgc ccgagtgcga acgaaagacc
      181 ccaggctgat agaatcgtga ttcgcttttt cacgcaatca ctgaattctt caaccgcagg
      241 gccagcgcct tatgtcagca cccacgtcag cactcgccgt ttccgcagcg gcatccgcca
      301 cccctggcca tcgccggatt ctcgtcacgt ccgcgctccc gtacgcgaac ggtcagattc
      361 atatcggcca tatggtcgaa tacatccaga ccgatatctg ggtgcgctcg ctgcgaatgc
      421 acggtcacga ggtctactac gtcggcgccg acgataccca cggcaccccc atcatgctgc
      481 gcgccgagca ggaaggcatc acgccgaagc agttgatcga gcgcgtgggg aaagaacaca
      541 aacgcgattt cgacagcttc ggcatctcgt tcgacaacta ctactccacc gacgccgaag
      601 aaaatcgcgt gttgtgcgaa tccatctacg gttcgctgaa ggcggccggg ctgatcgaag
      661 cgcgcgatat tgaacaagcc tacgatccgg tcaaggaaat gttcctgccc gaccgcttca
      721 tcaagggcga gtgcccgaaa tgcggcgcga aggaccagta cggcgacaac tgcgaagtct
      781 gcgggtccac gtaccagccg ctcgatctga tcaacccgta ttcagtggta tcgggcgcga
      841 cgccggtgcg caaaacgtcg acgcattatt tcttccgcct ctccgacccg cgttgcgaag
      901 acttcctgcg cggctgggtc agcgggctcg cgcagcccga agccactaac aagatgcgcg
      961 aatggctcgg cgacaagggc gacgccaaac tcgccgactg ggatatttcg cgcgactcgc
     1021 cgtatttcgg tttcgaaatc cccggcgcgc caggcaagta tttctacgtg tgggtggacg
     1081 cgcccgtggg ttattacgcc agcttcaaga atctggcgga tgcgcgcggc ctcgatttcg
     1141 aggaatggat ccggccggga tcgaagacag agcagtatca ctttatcggc aaggacatcc
     1201 tgtacttcca cacgctgttc tggcccgcga tgctggagtt ctccggccat cgcacgccga
     1261 cgaatgtgtt cgcgcacggt tttctcaccg tcgacggcgc aaagatgtcc aagtcgcgcg
     1321 gcacgttcat cacggcgaaa agcgtgatcg atacgggcat caaccccgag tggctgcgct
     1381 actacttcgc cgcgaagctg agccacacga tggaagacat cgacctgaat ttcggcgatt
     1441 tccaggcgcg cgtgaacagc gatctggtcg gcaaatacgt gaatatcgcg agccgggcgg
     1501 cagggttcct gatcaagcgt ttcgaaggcc gtgtgctgga cagcgcaatg gatcatccgc
     1561 tgctgttgca attgcgcgcc gccttgccgc agatcgcagc gctctacgaa gcgcgggaat
     1621 atgggcgggc gttgcgcacg accatggagc tcgccgatgc cgtcaacgca tttgtcgata
     1681 ccgcgaagcc ctgggatcag gccaaggacg aagccaactc cgctgcgctg cacgaaacgt
     1741 gcagcgtgag cctggaagca ttccgcttgc tgtcgctggc gttgaagcca gtgttgcctt
     1801 tgctggcgca atcggtggaa gggttcctcg gcatcgcgcc gctcgtctgg gcagatgtct
     1861 ccgtgccgct cagttcttcg cagccgatca acgcgtataa gcacttgatg acgcgcgtcg
     1921 atccgaagca ggttgaagcg ctgatcgcgg caaaccggga atcggtcgcg ccggggcaag
     1981 cggttgctgc cgcgcccgcg gctgcttcca cgtcctcgtc gaagaaggcc gcgaaggtga
     2041 aagagccgga agcggaaggc gtgatttcca tcgatgactt cgccaaggtc gatctgcgaa
     2101 tcgcgaagat cgtaaattgc acggcggtcg aagggtcgga caagctgctg caactgacgc
     2161 tggatgttgg cgaggaaaaa acccgtaacg tgttctccgg tatcaagtcg gcgtatcagc
     2221 cgcaggacct gatcgggaag ttcacggtga tggtcgccaa cctggcgccg cgcaagatga
     2281 agttcgggtt gtcggaaggc atggtgctgg ccgcttcctc cgacgacgag aaagccgaac
     2341 cgggcttgta cattctcgaa ccgcacagcg gcgcaaagcc gggcatgcgc gtgaagtaaa
     2401 gtctgggcga gcgattagtt gccgcgctcg cactgaagac caaaaggccg tttccaactc
     2461 acgttggaaa cggccttcta actttcatgc ggtccgcaat ctacttcccc tccgtcggcc
//
LOCUS       DATGBK010001417         3511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_109378, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001417 DATGBK010000000
VERSION     DATGBK010001417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109378"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            10..1020
                     /locus_tag="VKJ77_19755"
     CDS             10..1020
                     /locus_tag="VKJ77_19755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlxA family transcriptional regulator"
                     /protein_id="HMC47563.1"
                     /translation="MSPDRTASLAHFAFMPLPNFTMIAFTNAIEVLRMANYLTGQKLY
                     TWSIVSPDGGPVAASNGLSVDTGPVECVGLPDIVFVVGGIDVQRETTPAHLSALRRFA
                     RLGSVLGSLCTGTYALARAGLLAGYACAIHWENMSALKEEFPETRFLKELFVIDRDRV
                     TCTGGVAPLDMMLNLIATRVGSAKVTQIAEQFIVEHVRDTSAQQRMPLVARLGSANKS
                     LFEVISLMENNIEEPLSREELARLAGMSQRQLQRLFREHLGMTPTHYYLTLRLRRARE
                     LLLQTDMSIMHITMACGFQSACHFSKSYRDSFGTAPTRERRRQLPPLAVVAPMAIAQN
                     AA"
     gene            complement(1077..2276)
                     /gene="fdhA"
                     /locus_tag="VKJ77_19760"
     CDS             complement(1077..2276)
                     /gene="fdhA"
                     /locus_tag="VKJ77_19760"
                     /EC_number="1.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018467 - formaldehyde dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0046292 - formaldehyde metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formaldehyde dehydrogenase,
                     glutathione-independent"
                     /protein_id="HMC47564.1"
                     /translation="MSSNRGVVYLGQGKVEVQSIDYPKMVDPRGRQIGHGVILKVVTT
                     NICGSDQHMVRGRTTAQVGLVLGHEITGEVIEIGRDVETLKIGDLVSVPFNVACGRCP
                     TCKAQNTGVCLNVNPSRPGGAYGYVDMGGWIGGQAEYVMVPYADFNLLKFPDRDQAMA
                     KIRDLTCLSDILPTGYHGAVMAGVKPGSTVYIAGAGPVGMAAAASARLLGAACTIVGD
                     MNEERLAHARKVGFETVDLSKDASLADQIAAILGTPEVDCAVDCVGFEAHGHGSSGSH
                     QEAPATVLNSLMEITRVAGAIGIPGLYVTDDPGAADAAAKKGALSIRFGLGWAKSHSF
                     FTGQTPVVKYNQNLMQAILWDRLPIADIVNVSVVTLDQAPDGYRQFDGGAPRKFVIDP
                     HGMLKAA"
     gene            2490..3089
                     /gene="betI"
                     /locus_tag="VKJ77_19765"
     CDS             2490..3089
                     /gene="betI"
                     /locus_tag="VKJ77_19765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator BetI"
                     /protein_id="HMC47565.1"
                     /translation="MPKLGMREIRRAQLIDATLLTIDHAGLAGTTLASVAQRASISTG
                     IVSHYFGDKDSLLEATMRHVLRDLWNATSRRRRAAKDEPRARLRAVVAANFDVAQVSN
                     PVMKTWLAFWSESMHKPQLRRLQNVNTRRLYSNLCADFSKALPRAAARRAASGLAALI
                     DGLWLRGALSGVPFDTKAAMRLANDYIDLVLDTRGRTLT"
     gene            3101..>3511
                     /locus_tag="VKJ77_19770"
     CDS             3101..>3511
                     /locus_tag="VKJ77_19770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004533333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC47566.1"
                     /translation="MPVFELQRLYIGGAYVDATSGETFDTLDPATGETLASVQQASAA
                     DIDRAVRSAREGQREWAAMTAMQRSRILRRAVDILRERNDELAALETRDTGKPIAETR
                     AVDIVTGADVIEYYAGLATAIEGQQIPLRASSFVY"
BASE COUNT          678 a         1149 c         1028 g          656 t
ORIGIN      
        1 ccctcctcca tgtcccccga ccgaaccgcg tcgctcgcgc atttcgcgtt catgccgctg
       61 cctaatttca cgatgatcgc gttcaccaac gccatcgaag tgctgcgcat ggcgaactac
      121 ctgaccgggc agaagctgta tacgtggtcg atcgtgagcc cggacggcgg gcccgtggcg
      181 gcaagcaatg gcctctccgt ggataccgga ccggtcgagt gcgtcgggct gccggacatc
      241 gtgttcgtgg tcggcggcat cgacgtccag cgcgaaacca cgcccgcgca tctgtcagcg
      301 ctgcgccgtt ttgctcggct gggcagtgtg ctcggcagtc tctgcaccgg cacctatgcc
      361 ctcgcgcgcg ccggtttgct cgccggttat gcatgcgcga ttcattggga aaacatgtcg
      421 gcgctgaaag aggaattccc ggaaacacgc tttctcaaag agctattcgt gatcgaccgg
      481 gaccgcgtga cgtgcacggg cggcgtcgcg ccgctcgaca tgatgttgaa cttgatcgcc
      541 acgcgcgtgg gatcggcgaa ggtcacgcag attgcggaac agttcatcgt ggagcacgtt
      601 cgcgatacca gcgcgcagca acgcatgccg ctggtcgcgc ggctgggctc ggcgaacaag
      661 tcgctgttcg aagtgatttc gctaatggag aacaacatcg aggagccgtt atcgcgcgaa
      721 gaactcgcgc ggctggcggg gatgtcccag cggcaattac agcggctgtt tcgcgagcac
      781 ctcggcatga cacccacgca ttactacctg acgctgcggc tgcgccgcgc gcgcgaattg
      841 ctgctgcaga ccgacatgtc gatcatgcac atcacgatgg cttgcggctt tcagtcggcc
      901 tgccacttca gcaagagcta tcgcgattca tttggcacgg cgcccacgcg ggaacgacgg
      961 cgccagttgc cgccgctcgc cgtcgttgcc ccgatggcaa tcgcccaaaa cgccgcttga
     1021 gctttccgct tcaattcaag caaaaaacgg cgccttgagc acggcccctt acacggttaa
     1081 gcggccttca acatcccgtg cgggtcgatt acaaacttgc gcggcgcacc accgtcgaat
     1141 tgccggtatc cgtccggcgc ctgatcgagc gtcaccaccg acacattcac gatatccgca
     1201 atcggcaagc gatcccacaa gatggcttgc atcaggttct ggttgtactt cacgaccggc
     1261 gtctgcccgg tgaagaacga atgcgacttc gcccagccca ggccgaagcg aatgctcagc
     1321 gcacccttct tcgcggctgc gtccgcggcg cccggatcgt cggtgacata gaggcccgga
     1381 atgccgatcg cgcccgctac ccgcgtgatt tccatcagcg aattcagcac cgtggcaggc
     1441 gcttcctgat ggcttccgct gctgccgtga ccatgcgcct cgaagccgac gcaatcgacc
     1501 gcgcagtcca cttccggcgt gccgagaatg gctgcgatct ggtcggcgag cgatgcgtcc
     1561 ttcgatagat ccacggtttc gaatcccacc ttgcgcgcgt gcgcgaggcg ctcttcgttc
     1621 atgtcgccga cgatcgtgca agccgcgccc agcaaacgag cggacgccgc cgcggccatt
     1681 ccgaccggac ccgcgcctgc gatatacacc gtcgaacccg gtttcacgcc cgccatcacg
     1741 gcgccgtgat agcccgtcgg caggatgtcg gagaggcatg tgagatcgcg gatcttcgcc
     1801 atcgcctgat cgcggtcggg aaacttcaga agattgaagt cggcgtacgg gaccatcacg
     1861 tattcagcct ggccgccaat ccagcccccc atgtccacgt aaccgtaggc gccgcccggg
     1921 cgtgacggat tgacgttcag gcatacgccc gtgttctgcg ccttgcaggt cggacagcgg
     1981 ccgcacgcca cgttgaacgg cacggaaacc agatcgccaa tcttaagcgt ctccacatcg
     2041 cgcccaatct caatcacctc gccggtaatc tcatgcccca gtacaaggcc gacctgcgcc
     2101 gtcgtgcggc ctcgcaccat atgctggtcc gacccgcaaa tattcgttgt caccacttta
     2161 agaatcacgc catggccgat ctgccggccg cgtggatcga ccatcttcgg atagtcgatg
     2221 gattgcactt caaccttgcc ctgccccaga tatacgacgc cgcgattact gctcattgcc
     2281 tgtctccttg tctcgtggac gatttgcacg gcaaaacaca gccatgcacc gtctaacgag
     2341 cgtagtcctg tgccgcacca cagacgcgcg tcgaacgcga catgggtttg gcagaaaccg
     2401 acatggcgat tttatattga ttgaccaatc aatataaaat acctaggatt caaccttgat
     2461 ttccctgaag cgctacttgg atagaaccca tgcccaagct tggaatgcgc gaaatccgcc
     2521 gggcgcagtt gatcgacgcc acgctgctga ccatcgacca tgccggtctt gccggcacga
     2581 cgctggcgtc ggttgcgcag cgcgcaagca tttcgacggg tatcgtcagt cattatttcg
     2641 gcgacaagga cagcctgctc gaagccacca tgcgccatgt gctgcgcgac ctgtggaatg
     2701 caacatcgcg caggcgccgg gccgcgaaag acgaaccgcg agcacgcttg cgtgcggtgg
     2761 tggcggcgaa cttcgatgtc gcgcaggtca gcaatccggt gatgaagacg tggctcgcgt
     2821 tctggtcgga gagcatgcac aaaccgcaat tgcggcggct gcaaaacgtc aacacccggc
     2881 gcctgtattc gaatttgtgc gccgattttt cgaaggcgct gccccgtgcc gccgcccgtc
     2941 gcgcagcaag cggactggcg gcgttgatcg acggcttgtg gttgcgcggt gcactgtcag
     3001 gcgttccgtt tgacacgaaa gcggccatgc gtctggccaa cgattacatc gacctcgtgc
     3061 tcgacacacg cggtcgaacc ctcacttaaa ggacttcgcc atgcccgtat tcgaattgca
     3121 gcgcttgtac atcggcggcg cttacgtcga cgccaccagc ggcgaaacct ttgacacgct
     3181 cgatcccgcc acaggcgaaa cgctcgcgag cgtgcagcag gcgagcgcag cggatattga
     3241 tcgcgccgtg cgctcggcgc gcgaaggcca gcgcgaatgg gccgccatga ccgcaatgca
     3301 acgctcgcgc atcctgcgtc gcgcggtgga tatcctgcgc gagcgcaacg acgaactcgc
     3361 cgcgctcgaa acccgcgata cgggcaagcc gattgccgaa acacgcgccg tggacattgt
     3421 caccggcgca gatgtaatcg agtactacgc cgggcttgca acggccatag aaggtcagca
     3481 gatcccgcta cgcgcgagct cgttcgtcta t
//
LOCUS       DATGBK010001418         1862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_271851, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001418 DATGBK010000000
VERSION     DATGBK010001418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271851"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..1494
                     /locus_tag="VKJ77_19775"
     CDS             199..1494
                     /locus_tag="VKJ77_19775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014005703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HMC47567.1"
                     /translation="MKRVNARKRTTASVNKQSLWARLGPGLITGAADDDPSGIATYSQ
                     VGAGFGYAILWTAFFTFPLMVGIQTVSARIGRVTGKGLAANIRRHYPPWLLYGIVVLL
                     LIANTINIAADIGAMGAALKLLIGGPAHWYAIAFGLVSLVLQVFVPFPRYAPILKVLT
                     LALLAYVATVFVVEVPWTEVFYRTIMPSLSLKADYVVAVVAVFGTTISPYLFFWQASQ
                     EVEDQRAAAGEEPLITAPKQARAQLQRIKIDTYIGMGFSNLVAFFIMLTAVVTLHLHG
                     TTDIQTSAQAAQALRPLAGDFAFALFSAGIVGTGLLAVPILAGAAAYAVAETFNWRTG
                     LGLRLLQARGFYTIVIIATILGVALNFTPIDPIKALFWSAVINGVVAVPIMAVMMLMA
                     VRVDIMGSFVITRRLTIVGWLATATMAIVVLAMLATWGQ"
     gene            complement(1634..>1862)
                     /locus_tag="VKJ77_19780"
     CDS             complement(1634..>1862)
                     /locus_tag="VKJ77_19780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="short chain dehydrogenase"
                     /protein_id="HMC47568.1"
                     /translation="KGALNMIAKGVSNELRPRGVIAVALHPGWVRTRMGGEGAPVSVD
                     ECVAGQQRLLDSLTPNDSGRFFNYDGTELPW"
BASE COUNT          336 a          585 c          548 g          393 t
ORIGIN      
        1 atcacccgtg accttgctca ccgcggcaat tgcttgccgt cgtaattgaa gaagagaaaa
       61 gcaataatcg cattgacgcg cgtggcaaat tcctttcaat atgacgccaa caggtaatcg
      121 ccggacgcct gcgtccggat attcctcggc aatacggata cccgtgatgc catcgcaata
      181 ggtttggtgt ctcctgaaat gaaacgagta aacgcgcgca agcgtacaac cgcctcggtc
      241 aataagcagt cgctgtgggc ccggctagga ccgggtctta tcaccggagc ggcggacgat
      301 gacccgagcg gcatcgccac ctattcccag gtcggcgccg ggttcggcta cgcgatcctg
      361 tggacggcat tcttcacatt cccgctgatg gtcggcatcc agacggtgag cgcccgcatt
      421 ggccgagtga cgggtaaggg actcgccgcc aacatccgac ggcactatcc tccctggctg
      481 ctgtacggca tcgtcgtgct gctgctgatc gcgaacacca tcaacatcgc cgccgatatc
      541 ggcgcgatgg gggcggcgct gaaacttctt attggcgggc cggcccactg gtacgcgatc
      601 gcgttcggtc tggtatcgct ggtgctgcag gtcttcgtcc cctttccccg ctatgcgcca
      661 atattgaaag tgctgacctt ggcgctcctc gcttacgtgg ctaccgtatt cgtcgtcgaa
      721 gttccgtgga ccgaagtgtt ctaccggacg atcatgccgt cactatcgct caaagcggat
      781 tacgtggtcg cggtcgtagc cgtgttcggg acaaccatca gcccgtatct ctttttctgg
      841 caggcctcgc aagaagtcga ggaccagcgg gcggcggcag gtgaggagcc gctgataaca
      901 gcgccgaaac aggcgcgcgc acaattgcag cgcatcaaga tcgatactta cattggcatg
      961 ggattttcca acctcgtcgc cttcttcatc atgctgacgg cggtcgtgac cctgcacttg
     1021 cacggcacta ccgacattca gacttccgcg caggcggcgc aggcgctgcg tccccttgcg
     1081 ggagatttcg cgttcgcgtt gttttccgcc ggcatcgttg gcaccgggct gctcgccgtg
     1141 ccgattctcg ccggcgcggc agcctacgcc gtcgccgaga cgttcaattg gcgcacaggc
     1201 ctcggcctcc ggctgttgca ggcgagaggg ttttacacga tcgttatcat tgcgactatc
     1261 ctcggagtag cgcttaattt cacccccatc gatccgatca aggccctctt ctggagcgcg
     1321 gtcatcaacg gtgtcgtcgc cgtgcccatc atggctgtga tgatgctgat ggcggtacga
     1381 gtggacatca tgggctcatt cgtcatcacg cgccggctca cgattgtcgg ctggcttgcg
     1441 accgcaacca tggcaatcgt ggtgctcgcc atgctcgcaa catgggggca atgaacgcgt
     1501 ctccttgccg tgaacgtgcc ggtggtcgcc cttgcccgtc tcgttgtcgt agcgcgccag
     1561 gcactttccg caaaacgcaa tagtgacgcg ggtttccggc ttgttgcaag aaccgggtaa
     1621 cagccgacct tgctcaccac ggcaattccg tgccgtcgta attgaagaag cggccgctat
     1681 cattaggcgt cagcgaatca agcaggcgtt gctggccggc aacgcattcg tccaccgaaa
     1741 ccggcgcgcc ctctccgccc atgcgcgtgc gcacccagcc cggatgcagc gccacggcga
     1801 tcacgccgcg cggccggagc tcgttggaga cgcccttggc gatcatgttg agcgcgcctt
     1861 tg
//
LOCUS       DATGBK010001419         1643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_16503, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001419 DATGBK010000000
VERSION     DATGBK010001419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16503"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /gene="lpxK"
                     /locus_tag="VKJ77_19785"
     CDS             complement(<1..600)
                     /gene="lpxK"
                     /locus_tag="VKJ77_19785"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HMC47569.1"
                     /translation="MSDFKPPIENFLAREWRKRGWVAWSLTPFACVFGLIAALRRGFF
                     ALGWIKQVNVGVPVVVVGNVTVGGTGKTPTVIALVEALRAAGFQPGVVSRGYGAKIHE
                     ATRVTPDSQPSEVGDEPLLIARRTRAPVMVSPDRVAAAQALLKENPSVDVIVSDDGLQ
                     HYRMARAFELVVFDDRLGGNGFLLPAGPLRESMSRHRDAT"
     gene            1284..>1643
                     /locus_tag="VKJ77_19790"
     CDS             1284..>1643
                     /locus_tag="VKJ77_19790"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012399955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HMC47570.1"
                     /translation="MSSDPFASSGSAGASGSADAVIPVSALNRAIGSMLERSFPLVWV
                     SGEVSNFTKAASGHWYFSIKDAQAQMRCVMFRGRAQYAEFTPREGDRIEVRGLVTMYE
                     PRGELQLGVEAVRRTGQG"
BASE COUNT          309 a          500 c          526 g          308 t
ORIGIN      
        1 cgtggcgtcg cggtgccgcg acatcgattc acgcagcggt cccgccggca gcaggaaacc
       61 gttgccgccc agacggtcgt cgaagaccac gagttcgaac gcccgcgcca tgcggtagtg
      121 ctgcaggccg tcgtcgctga cgatcacatc caccgatgga ttctccttca gcaacgcctg
      181 cgccgccgcg acgcgatccg gcgacaccat cacgggcgct cgggtgcggc gggcgatcag
      241 caggggttca tcgccgactt cggagggttg gctgtcgggc gtcacccgcg tggcttcatg
      301 gatcttcgcg ccgtaaccgc gcgagacgac gcccggctga aagccggcgg cgcgcaatgc
      361 ttcgacgagc gcgatgaccg tcggcgtctt gccggtgccg cccacggtca cgttgccgac
      421 cacgacaacc ggcacgccca cgttcacctg cttgatccag ccgagcgcga agaacccgcg
      481 gcggagggct gcgatcaggc cgaacacgca cgcgaacggc gtcagcgacc aagcgaccca
      541 gccgcgcttg cgccactcac gggcgaggaa gttttcgatc ggcggcttga agtcagacat
      601 ggcgcgcctt gagcccagaa gcttcaggag cgaacgatgc acgcgcttgg gacgacaacc
      661 acgcaaggcg gtgtagcggc gagcggaagg gcaatgttcg tgataacggc cggcaccttt
      721 gcatcggggc ggatctccag aatgagcgaa tggtaagcag ttggtaagta gtcgataagc
      781 ggtcgctgga cgacgcaggg caattgtcgc gctggccctt gaacccggca ctctagcgcg
      841 gcattgccgg gggcgccagt cgaagggcga tccggacctc gccggccggt gtcgaaacgg
      901 gctcaggcgt ggtccgaaaa cgggtagatt cgatgctcca tttttcacac aaagcgcctg
      961 tggataactc tgtgaacaac ttggacttcc gcggcctgaa atcgacgcca ggaaggagct
     1021 gcatcggctt tgcaatgatt tggagatgga aaacattgtt aaaacaatga cttaaagtgc
     1081 gttcatcatt gtttcacgaa cgtgcccgtc agctttcggt aacttgtgca ttgtggacac
     1141 ttgctacact tcggacgctg atcggtctat cgtccgtgcc ttgttgaccg ggggcgcggc
     1201 attcacaaga cagcgattcg tccgctacca ggccagcggt ttttccagcc ttgtttttaa
     1261 ccttcaccaa cgccttttct tcgatgagct ccgatccttt cgcttcatcc ggttcagccg
     1321 gtgcatccgg cagcgccgat gccgttatcc ccgtttccgc gctgaaccgg gcgatcgggt
     1381 cgatgctcga acgctcgttc ccgctggtct gggtatcggg tgaagtatcg aattttacga
     1441 aagcggccag cggtcactgg tacttttcga tcaaggacgc gcaggcgcag atgcgctgcg
     1501 tgatgttccg cggccgtgcg cagtacgccg agttcacgcc gcgcgaaggc gaccggatcg
     1561 aggttcgcgg actggtcacc atgtacgaac cgcgcggcga gttgcaactc ggcgtggaag
     1621 cggtgcgccg gactgggcaa ggc
//
LOCUS       DATGBK010001420         4571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_109454, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001420 DATGBK010000000
VERSION     DATGBK010001420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4571
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109454"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..872)
                     /gene="lysA"
                     /locus_tag="VKJ77_19795"
     CDS             complement(<1..872)
                     /gene="lysA"
                     /locus_tag="VKJ77_19795"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HMC47571.1"
                     /translation="MTQSAFSRADGVLQVEGVSAASLADQFGTPLYVYSRSALTDAYK
                     AYADACNGRRATIHVAVKANSNLAVLNVFARLGAGFDIVSSGELARVLAAGGKAENTV
                     FSGVGKTAAEMREALDAGVKCFNVESIPELHVLNEVAKAAGKQAPVSLRVNPDVDAKT
                     HPYISTGLKSNKFGVAFAEARATYAQAAAMSNLDVIGIDCHIGSQITEVSPYLDAVDK
                     LLDLVEQIEADGTNIHHVDVGGGLGITYDDETPPAIGEFVRAVLAHIDDRGHGHREVY
                     FEPGRSLVGNAGVLL"
     gene            871..1164
                     /locus_tag="VKJ77_19800"
     CDS             871..1164
                     /locus_tag="VKJ77_19800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47572.1"
                     /translation="MSFLVLLTRLAGWPQARYGNVYSPEEAALGADADSGDFMLSSGE
                     SESAVPDVSGTSPVLSTEEAADAAAGTLALFALLAGNGGMLAGRAGIGGATGI"
     gene            1292..1609
                     /gene="cyaY"
                     /locus_tag="VKJ77_19805"
     CDS             1292..1609
                     /gene="cyaY"
                     /locus_tag="VKJ77_19805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HMC47573.1"
                     /translation="MTDNEYLTLAEAALAAIERDVDGLEADVEFERSGNVLTLEFENR
                     TKLIVNLQPPLHELWLAAKAGGFHYKYVDGAWRNTRDGSEFFEALSQYATEQAGEPIR
                     FSA"
     gene            complement(1684..4092)
                     /locus_tag="VKJ77_19810"
     CDS             complement(1684..4092)
                     /locus_tag="VKJ77_19810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HMC47574.1"
                     /translation="MQSQSPSSPPSRHPESPKRVRPLWIRLLLGLLICIVGLIISAGL
                     VLGYALVVAQPNLPSLEALTDYRPKVPLRVYTADHVLIGEFGEERRSVVRIQDVPDYL
                     KKAVLAIEDARFYDHGGVDLTGILRAGTVALTNGHASQGASTITMQVARNFFLSSEKT
                     YTRKIYEMLLAYKIERALTKDQILEVYMNQIYLGQRAYGFASAARVYFGKDLKDITLA
                     EAAMLAGLPKAPSAYNPVVNPKRAKVRQQYILERMLELHYITQQQYDDAAKQPLVVKG
                     AGREFSVHAEYVAEMVRQMMYTQYREEAYTLGLNVVTTIDSADQDAAYRAVRKGLMDY
                     EHRHGYRGPEAYIDLPTDPDDREQAIDDALVDHPDNGEIVAAVVTEASPKQVKASFID
                     GNVAVVQGNDLRFVASALSTRAQPNQRIRPGAIVRLMKNDDDTWVITQLPQVEGAFVS
                     IVPQDGAIRALVGGFDFNKNKFNHVTQAWRQPGSSFKPFIYSASLEKGLSPATIINDA
                     PLYFSAAETGGQAWEPKNYGGGFDGPMAMRTALMKSKNLVSIRILNNIGPKYAQGYVT
                     KFGFDASRQPAYLPMALGAGQVTPLQMATGYSVFANGGYRVNPYLIADITDPRGAVVS
                     HPQPLIAADTAPLAITPRNAYVMNSLLQSVAQRGTGARTNQLKRTDLAGKTGTTNDSH
                     DAWFAGYQHSLVAIAWIGYDSPRSLGDKETGGGLALPVWMDYMSRALRDVPEYKSTMP
                     PDVVSLGGELYFDDMTPGHGFVATIGVSQAVPEDVSGGTPSAPAPQVGEQEKQDIMNL
                     FKGQ"
BASE COUNT          841 a         1378 c         1409 g          943 t
ORIGIN      
        1 agcaacacgc ccgcattgcc gaccagcgag cggcccggct cgaaatacac ttcgcgatga
       61 ccgtgcccgc ggtcatcgat atgggcgagc accgcacgca cgaattctcc gatagccggt
      121 ggcgtttcgt cgtcgtatgt aatcccgagt ccaccaccga catcgacgtg atgaatgttc
      181 gtaccgtccg cttcgatctg ctcgaccagg tccagcaatt tgtcgacggc gtcgagatac
      241 gggctcactt cggtgatctg cgaaccaata tggcagtcga tgccgatcac gtcgagattc
      301 gacatggccg ctgcttgcgc gtaggtcgcg cgggcctcgg cgaacgccac gccgaacttg
      361 ttcgatttca ggcccgttga aatatacgga tgtgtcttgg cgtcgacgtc gggattcacg
      421 cgcagcgaca ccggcgcttg cttgcccgcc gccttggcga cttcgttcag cacatgcagt
      481 tcgggaatgg attcgacgtt aaagcacttc acgccggcat cgagtgcttc gcgcatttcc
      541 gccgccgtct tgcccacgcc ggagaacacc gtgttttcgg ctttgccgcc cgcagccagg
      601 acgcgcgcca gttcacccga cgagacgatg tcgaagcctg cgccgagtcg cgcgaatacg
      661 ttcagcaccg cgaggttgct gttggctttc acagccacat ggatagtagc gcggcggcca
      721 ttgcaggcat cggcgtaagc tttgtacgcg tcggtcaacg cactgcgcga atacacgtag
      781 agtggtgtgc cgaactgatc ggccagcgac gcggccgaaa cgccttcgac ctgcagcacg
      841 ccgtcggcgc gcgagaatgc ggattgagtc atgagttttc tggttctgct gacgcgcttg
      901 gccggatggc cccaagcgcg gtatggcaac gtttattcgc ccgaggaagc ggctttggga
      961 gccgatgccg actcgggtga tttcatgttg tcgtcagggg agagcgaaag tgccgtgccg
     1021 gatgtgtcgg gaacgtcgcc ggtactatca acagaagagg cggccgatgc cgctgcaggc
     1081 acactcgcgc ttttcgcact gctcgccggc aacggcggca tgctggcggg acgagccggg
     1141 atcggcgggg cgacgggcat atagagcggt ccacgctgac cacaggcggc gagcagcgtg
     1201 ccggcggaaa tggccaaagt cgctacaatc gcgctcatcc ggaagacgac ttgcattact
     1261 gtccctgact aattaatcga tggagtttag catgaccgac aacgaatacc tgaccctcgc
     1321 cgaggctgca ctggcggcca tcgagcggga cgtggacggc ctcgaagccg atgtcgaatt
     1381 cgaacgcagc ggtaatgtct tgacactcga attcgagaac cgcacgaagc tgatcgtgaa
     1441 cttgcagccg ccgctgcacg agctctggct cgcggccaag gcgggcggtt ttcactataa
     1501 atatgtggac ggcgcatggc gtaacacgcg cgacggcagc gagtttttcg aagcgctcag
     1561 ccagtacgcc accgaacaag ccggggagcc gatccgcttt tcagcttgat ctgcagcgtg
     1621 agcttcagct tgatttgctg ctcaggcccc ggactagccg gggcttgagt tcaagcatgc
     1681 tgcttactgt cctttgaaca gattcatgat gtcctgcttt tcctgctcgc cgacctgcgg
     1741 cgcgggcgca gaaggcgtcc cgccgctgac gtcttccggc acggcctgac tcacaccgat
     1801 agttgccacg aatccgtgac ccggcgtcat gtcgtcgaaa tagagttcac cgcccagcga
     1861 gaccacatcg ggcggcatgg tcgacttgta ttccggtacg tcgcgcaacg cccggctcat
     1921 gtagtccatc cacaccggca gtgcgagtcc gccgcccgtt tccttgtcgc cgagactgcg
     1981 cggcgagtcg tacccaatcc atgcgatggc caccagcgaa tgctgatagc cggcgaacca
     2041 cgcgtcgtgc gagtcgttcg tcgtgccggt cttgcctgca agatcggtcc gctttaactg
     2101 gttcgtgcgg gcgcccgttc cgcgttgcgc cacgctttga agcaggctgt tcatcacgta
     2161 ggcgttgcgc ggcgtaatgg cgagcggcgc ggtgtcggcg gcgatcagcg gctgcggatg
     2221 cgagaccacg gcgccacgcg gatcggtgat atcggcgatg agatagggat tcacgcggta
     2281 tccgccattc gcgaacaccg aataccccgt cgccatttgc agcggcgtaa cctggcctgc
     2341 accgagcgcc atcggcagat acgcgggctg acgcgacgca tcgaagccga acttcgtcac
     2401 atagccttgc gcatatttcg gaccgatgtt gttcaggatc cggatggaga ccaggttctt
     2461 cgatttcatc agcgctgtac gcatggccat cgggccgtca aaaccgccgc cgtagttctt
     2521 cggctcccat gcctggccgc cggtctcagc agcgctgaag tacagcggcg cgtcgttgat
     2581 gatggtcgcc ggcgacaagc ctttttccag cgatgccgaa tagatgaacg gcttgaagct
     2641 cgaacccggt tggcgccacg cctgagtgac gtggttgaac ttgttcttgt tgaagtcgaa
     2701 gccgcccacc agcgcgcgga ttgcgccgtc ctgcggcacg atggaaacaa acgcgccttc
     2761 cacttgcggc agttgcgtga tgacccaggt gtcgtcgtcg tttttcatca ggcgcacgat
     2821 cgcgcccggc cggatgcgct ggttcggctg cgcccgcgtg ctgagcgcgc tggcgacaaa
     2881 acgcagatcg ttgccttgaa cgaccgccac gttgccatcg ataaaactcg ccttcacctg
     2941 cttggggctc gcctcggtga cgaccgccgc gacgatctcg ccgttgtcgg ggtggtcgac
     3001 gagagcgtcg tcgatagcct gctcgcgatc gtcggggtcc gtaggcagat cgatatacgc
     3061 ttccggcccg cgatacccgt gccggtgttc atagtccatc aaacctttgc gcacggcgcg
     3121 atacgctgcg tcctgatcgg cggaatcgat ggtcgtcacc acgttcaggc ccagcgtata
     3181 agcctcttcg cgatattgcg tgtacatcat ctggcgcacc atttccgcca cgtattcggc
     3241 gtgcacgctg aactcgcgcc cggcgccctt cacgacgagc ggttgtttcg ccgcgtcgtc
     3301 atattgctgc tgcgtgatgt aatgcagttc gagcatccgt tccagaatat attgctggcg
     3361 cacttttgct cgtttcggat tgacgaccgg gttgtacgcg gagggcgctt tcggcaagcc
     3421 ggcgagcatg gcggcttcgg cgagcgtgat gtccttcagg tccttgccga aatagactcg
     3481 cgcggcgctc gcgaagccat aggcgcgctg tcccagataa atctggttca tatagacctc
     3541 gagaatctgg tctttcgtca acgcgcgctc gatcttgtag gcgagcagca tctcgtagat
     3601 cttgcgggtg taggtctttt cactcgacaa gaagaaattt cgcgcgactt gcatggtgat
     3661 cgtgcttgcg ccctgggacg cgtggccgtt cgtcaacgct acggtgccgg cgcggaggat
     3721 accggtcagg tcgacaccgc cgtgatcgta gaaacgcgcg tcttcaatgg cgagcaccgc
     3781 cttcttgagg taatccggca cgtcctggat acgcacgacg ctgcgccgtt cttcgccgaa
     3841 ttcgccaatc aacacgtgat ctgccgtgta gacccgcagc ggtactttcg ggcggtagtc
     3901 ggtgagcgct tcgagcgacg gcaggttggg ctgggccacc accagcgcgt aacctagcac
     3961 gagccccgcg ctgataatca gcccgacaat acaaattaac aatccgagca gaagcctgat
     4021 ccagagcggg cgaacacgct tcggggattc gggatgacgg gacggagggg acgacggaga
     4081 ctgagattgc atggcaccac caaaaaacgg tcccgcgatt atagctgccc aactttacgg
     4141 ctttcgtctg gcttacttga ggtgttgcgc gcagggtgcg gcgacacctt tttcgtcacg
     4201 ataagcgttg acggactgcg accgctaacg tttgcatcgc atcgtttcga tgctgttcac
     4261 gctcgtttca tgcccgccgc cggccggcgt tttaagtccc ttccttcctt tacgttagcc
     4321 acttggacga atggtggcaa ccacctccgc tggccacaat cgtttcattg ccagcgccca
     4381 acagttcggt gcgcggcgtg gaaagagagg atgagcatgg gtacgcaaac actattgcgc
     4441 ggatcggtct tgaccgttac gcgtcggttc gcggcgggta tcgatattac cgaaggggcc
     4501 gtgaggctcg ctgttgtgag caagcggttg caggcaaacc ggccagtttg cgtcgagcgg
     4561 ctggaggagg t
//
LOCUS       DATGBK010001421         2528 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_294601, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001421 DATGBK010000000
VERSION     DATGBK010001421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294601"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1289)
                     /locus_tag="VKJ77_19815"
     CDS             complement(<1..1289)
                     /locus_tag="VKJ77_19815"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HMC47575.1"
                     /translation="MNNCTLKTVTPAELNAAAADLLDHGGCMQVAYAWFPRPDAPELR
                     YISTTPGQREFMSWRVDASKEPVASLAAKSPLLGWHEREIMEMSGIAFAGHPEPERLV
                     SAFLPQTERGPLEPSGTVHASAAGSLAAPTLPQVSGKHVQLLPFGPVRADVVESAQFI
                     FYYVGEGILHYHPNLFLKHRGMEKQFEGIDIERGVLLAERVSGVDTVAHALAYAQAVE
                     DASGCIVPPRARWLRVIAAELERTYNHLHYLGHLCHTTTLKVGEAQGKLLEERAKQMN
                     ALASGSRLLRNIVWPGGVRRDLDVVAISQGVAPLQRELERYVDLIERTTSHLDRLIST
                     APLSQQLAFDQGATGPIERASGIDRDLRRDHPYAAYGELQPAVATRSEGDAYARMKVR
                     IAELRASLGLLDDAITRGVPTGPLLEPCRRVPNAEGLG"
     gene            complement(1286..>2528)
                     /locus_tag="VKJ77_19820"
     CDS             complement(1286..>2528)
                     /locus_tag="VKJ77_19820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013106081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HMC47576.1"
                     /translation="YCLASIYAVGYMRLLAEERERLPNFYALFALFAATMICGPIMNN
                     IGVYWIAIELTTLVSTFLVGFERGREAIEAAWKYIIVVSAGISLALLGTVLFYWAGSL
                     VIGPTYDMTWDALRHAAPQMNPALTQMAFLLVLVGYGTKAGLAPMHTWLPDAHSEGPA
                     PVSAMLSGALLNTAMLGIARFLTITDAASSSLLPRTVLVAFGAFSLFVAALFIVKQQG
                     IKRLMAYSSVEHMGVLALGFGFGGPLAIAAVLYHMLNHSLNKSLMFFGAGNVMRVFGT
                     KDMGEIRNVWTRFPVTGALWLAGAVAITGAPPFGLFLSELTLMRAGMASSNAWAVIVM
                     LLLLIVIFIGFLNHFRAMYFEATPAGEAHEIIRKVSVSAWMTVPMWLALAPVLILGVW
                     WPQDLWRFFEMVAADLGGVAR"
BASE COUNT          520 a          815 c          774 g          419 t
ORIGIN      
        1 ccgagcccct cggcgttcgg cacgcgccgg caaggctcga gcagcggccc ggtagggact
       61 ccgcgcgtga tggcgtcgtc gagcagtccc aggctcgccc ggagttccgc gatacgcacc
      121 ttcatccggg catacgcatc cccctcgctg cgggtcgcga cagcgggctg cagttcaccg
      181 tacgctgcgt acggatgatc ccgcctgaga tcacgatcga tgcctgacgc ccgctcgata
      241 ggcccggtag cgccttgatc aaaggcgagc tgctgactga gcggcgcggt ggaaatgaga
      301 cggtcgagat gactggtggt ccgctcgatg agatcgacgt accgttccag ttcacgttga
      361 agtggcgcga cgccctggga aatcgcaacc acgtccagat cccggcgtac gccgcccggc
      421 cagacaatgt tgcgcaacag ccggctaccc gatgcaagcg cattcatttg cttcgctcgc
      481 tcctccagca gcttgccctg ggcctcgcca accttcagcg tagtcgtgtg gcacaagtgc
      541 ccgaggtagt gcaagtggtt gtaggtgcgt tcgagttccg ccgcgatgac acgaagccac
      601 cgcgcacgcg gaggtacgat gcaccccgag gcgtcctcga cggcctgcgc atacgcaagc
      661 gcgtgcgcga cggtgtccac gcccgagaca cgttcggcca gcagaacgcc tcgttcgatg
      721 tcgatcccct caaactgttt ctccataccg cgatgcttga ggaacaggtt ggggtgatag
      781 tggagaatgc cttcgccgac gtaatagaaa atgaactggg ccgactcgac gacgtcagct
      841 cgcactgggc cgaagggcaa tagctgaacg tgcttgccgg acacttgcgg cagcgttggt
      901 gccgcaagtg agcccgcagc gctcgcatgc accgtcccgc tcggctctag cgggccacgc
      961 tccgtctgag gcagaaatgc gctcaccaag cgctccggct ctggatggcc ggcgaacgcg
     1021 atgccgctca tttccatgat ctcgcgctcg tgccagccaa gcagtggaga cttcgccgca
     1081 aggcttgcga ctggctcttt gctcgcgtcg acacgccagc tcataaactc ccgctggccg
     1141 ggcgtggtcg agatgtaccg caattccggc gcgtccggtc gcggaaacca cgcatacgca
     1201 acctgcatgc aacctccatg atcaagaaga tcggcagcgg ccgcgttgag ttcggcaggc
     1261 gttacggtct tgagcgtgca gttgttcatc gcgcaactcc tcccagatca gcggcaacca
     1321 tttcaaagaa gcgccacagg tcttgcggcc accatacgcc gaggatcaac accggcgcca
     1381 gggcgagcca catcgggacg gtcatccagg cgctgacgct caccttacga ataatctcgt
     1441 gtgcctcgcc cgctggcgtg gcttcaaagt acatggccct gaagtgattg agaaagccga
     1501 tgaagataac gatcagcagc agcaacatca cgatcacggc ccaggcgttc gaactcgcca
     1561 tgccagcgcg catcaatgtc agttcgctca gaaagagccc gaacggaggt gcacccgtga
     1621 tcgccacggc gccagccagc cacagcgccc ccgtgaccgg aaaacgagtc cacacgttgc
     1681 gtatctcgcc catgtccttg gtgccgaata cgcgcatgac gttgccggcg ccaaagaaca
     1741 tgagcgactt gtttagcgaa tggttgagca tgtgataaag cacggcggcg atcgcgagcg
     1801 ggccgccgaa tccgaatccg agcgccagca cgcccatgtg ctcgacgctg gaataggcca
     1861 tcagccgctt gatgccctgc tgcttcacga tgaagagcgc ggcgacaaac agcgaaaatg
     1921 cgccgaacgc gacgagcacc gtgcgcggca gcagagagga actcgcggca tcggtgatgg
     1981 tcaggaaccg cgcgatgcca agcatcgccg tattcaaaag cgcaccggag agcatggcgg
     2041 acaccggcgc cggaccctcg ctgtgtgcgt cgggcagcca cgtatgcatc ggcgcgaggc
     2101 ccgctttcgt gccatagccc accagcacga gcaggaacgc catctgggtg agggccggat
     2161 tcatctgcgg ggccgcatgg cgcagcgcat cccaggtcat gtcgtaagtc gggccaatga
     2221 cgagacttcc cgcccagtag aacagcacgg tcccgagcag cgcgaggctg atgcccgcgg
     2281 acaccacgat gatgtatttc cacgccgctt cgatcgcttc ccggccacgc tcgaagccga
     2341 cgaggaacgt gctgacaagc gtggtcagct cgatcgcaat ccagtacacg ccgatattgt
     2401 tcatgatcgg tccgcagatc atcgttgccg cgaacagggc gaagagcgca tagaagttcg
     2461 gcagccgttc gcgctcctcg gccagcaagc gcatgtagcc aacggcatag atggaagcga
     2521 ggcaatac
//
LOCUS       DATGBK010001422         1567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_294603, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001422 DATGBK010000000
VERSION     DATGBK010001422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294603"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..>1567
                     /gene="atzF"
                     /locus_tag="VKJ77_19825"
     CDS             65..>1567
                     /gene="atzF"
                     /locus_tag="VKJ77_19825"
                     /EC_number="3.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004039 - allophanate hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allophanate hydrolase"
                     /protein_id="HMC47577.1"
                     /translation="MLNSTDLFERPRVTALLAAYAARRCSPLTVVDAVFKRISAVDRP
                     EIWIALLPEDAARAQARALEDALAEEGDAVFERLPLFGVPFAVKDNIDVAGLPTTAAC
                     EPFSFTPDVSAFAVQRLLDAGAILIGKTNLDQFATGLVGTRSPFGAVRQVEFAAYVSG
                     GSSSGSAVAVAAGCVAFSLGTDTAGSGRVPAGFNGLVGLKPSLGLVSKSGVVPACRSL
                     DTLSIFAHDVADAWHVLTQMAAFDALDAYSRKLPALGASASSPRIGVPAALEFFGDAN
                     SENAFLATLDTLSTRLGLTPGKVDFTPFKRVSALLYDGPWVAERRAALGAFFETNFAD
                     IDATVASVIGKADRFSAVDAFNGQYTLAELKREADRCFDQFDILIVPTTPTHPLIADV
                     RANPIERNSELGYYTNFVNLLDLCALAVPCLHRSDGLPAGVTLIAPSGADHRLAVMGA
                     RIQALFDEQSGPSPDLQPLPFQEPAVALAVVGAHLRGQPLNRQLLEAGARF"
BASE COUNT          256 a          471 c          492 g          348 t
ORIGIN      
        1 ttgaaaaaga gcctggcata gcttctgcat taatgaattc catcttgtat gcaagacgga
       61 attcatgctc aattcaaccg acctgttcga gcgtccacgc gtcacggctc ttttagccgc
      121 gtatgcggcg cggcgttgct cgccgctgac cgtggtcgat gcggtgttca agcggatcag
      181 cgctgtggac cgcccggaaa tttggatcgc cctgctgccg gaggacgccg cgcgcgctca
      241 ggcacgtgcg cttgaagacg cgcttgccga agaaggcgac gcggtgttcg aacgtttgcc
      301 gctgttcggc gtgccatttg cagtcaagga caacatcgac gtagcgggtt tgccgactac
      361 cgccgcgtgc gaacctttta gcttcacgcc cgatgtatcg gcgttcgccg ttcagcggct
      421 gctcgatgcc ggcgcgattc tcatcggcaa gaccaatctg gatcagtttg ctacgggtct
      481 cgtcggcaca cgctcgccgt ttggcgcggt gcgtcaggtt gagtttgccg cgtatgtatc
      541 gggcggctcg agttccgggt cggcagtcgc cgttgccgcc gggtgcgttg ctttttcgtt
      601 gggcacggac acggccgggt ccggccgcgt gccggcggga ttcaatggac tggtcgggct
      661 aaagccatcg ctgggtctgg tgagcaaaag tggcgtggtg cctgcttgtc gtagtctcga
      721 tacgctttca atcttcgcgc acgatgtggc ggacgcctgg catgtgctca cgcagatggc
      781 cgcgttcgac gcgctcgatg cgtactcgcg caagctgccg gccttgggtg cgagtgcttc
      841 ttccccacgt ataggcgtgc ccgctgcgct tgaatttttc ggtgacgcta actcggaaaa
      901 cgcgttcctc gcgaccctcg atacgctctc gacccggctg ggcctaacgc ctggcaaggt
      961 tgatttcaca ccgttcaaac gtgtatcggc gttgctttac gacggcccgt gggtcgccga
     1021 gcgccgcgct gcgctgggtg cattcttcga gacaaacttc gcggatatcg acgcaacggt
     1081 ggcgtcggtg atcggcaagg ccgaccgctt cagcgcagtc gatgctttca acggccaata
     1141 cacgctcgcg gaactcaagc gcgaagccga tcgatgtttt gatcagttcg atatcctgat
     1201 tgttccgacc acgccgactc atcccttgat cgccgacgtg cgggcaaacc ccatcgaacg
     1261 taatagtgaa ctgggctatt acaccaactt cgtcaacctg ctggatctgt gcgcgctggc
     1321 tgttccatgc ctgcatcgca gcgacggttt gccggccggc gtgaccctga tcgcgccgag
     1381 cggcgcggac catcggctgg cggtgatggg cgcgcgaatc caggcgcttt tcgacgaaca
     1441 atccggtccg tctcctgatc tacagccgtt gccattccag gagccggctg tcgcgctggc
     1501 agtagtgggt gcgcatttga gagggcagcc gctcaaccgg caattgctgg aagcgggcgc
     1561 tcgcttc
//
LOCUS       DATGBK010001423         1751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_155582, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001423 DATGBK010000000
VERSION     DATGBK010001423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155582"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1751
                     /locus_tag="VKJ77_19830"
     CDS             <1..>1751
                     /locus_tag="VKJ77_19830"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HMC47578.1"
                     /translation="RASALLALTVWICFLWYDFSFGRESAVLAPVFMQIMVLRLAGIV
                     LLAFVGSLTLRASFATHATSQRVILTGVYGCNVLLVLMVALAPGPYNYTWYFVGLYLV
                     FFFQSGFFYLKSRVALTAAVVTFSAIILLQLTIRILSPEDFYMGLFYLFNVVVIGHGV
                     CVHAERVSRERFAAERALGVLNKELLTANVQLERKNLDLLASKKDQDTKTNALLALKE
                     QQMLAAETASREKSNFLAAATHDLRQPMHALNLFLQAAAEALHHDDVTEAARLIDESG
                     RSSVILARFLNAVLDLSRLESGRVVPRYHVFDLKIAVLEAAEQLRPLAAMHGVELRLR
                     MPQAPVYVRSDAHWLGRAIVNLVSNGIRYADASKKAEPVVIVGVVRSATRTRIDVVDN
                     GIGIASEHWDSIFQPFFQVGNAEQDNDRGLGLGLSIVNAVVSILEEHRIELKSTEGRG
                     SRFSLEMPICGSPLGEAAPRARGETADMQTVPLDGLYVLLVEDDSLVRASTEALLVQW
                     GMLFDSASSFEEFEETLDTIERYPDLIITDFRLRDSKTARDVAMLSAVKIGRRCPCLV
                     VTGEPAATIVPLACDHDV"
BASE COUNT          304 a          519 c          545 g          383 t
ORIGIN      
        1 cgtgcatcgg cgcttctcgc gctgactgtg tggatctgct tcctctggta cgacttcagt
       61 ttcggccgtg aaagcgcggt gcttgcccct gtcttcatgc agatcatggt gctgcggctg
      121 gccggcatcg tgttgctggc attcgtcggc agcctcacct tgagggcgtc gttcgcgacg
      181 catgccacgt cgcagcgcgt gattctgacc ggcgtctacg gctgtaacgt gctgctggtt
      241 ctgatggtgg ccctggcgcc aggaccgtac aactacacgt ggtatttcgt cgggctctac
      301 cttgtatttt tcttccagtc cggcttcttc tatttgaagt ccagggtggc gctgacggcc
      361 gccgtggtca cgttttcagc gatcatcctg ctgcagctca ccatcaggat tctctcgccc
      421 gaagacttct acatgggcct gttctatctc ttcaacgtgg tcgtgatcgg tcatggcgta
      481 tgcgtgcatg cggagcgggt atcgcgtgag cgcttcgcgg cagagcgtgc actcggcgtg
      541 ctcaataagg agcttctcac cgcaaacgtt caactggaac gaaagaacct ggacctgctg
      601 gcatcgaaga aagatcagga caccaagacc aacgcattgc ttgcgcttaa agagcagcag
      661 atgctggccg cggaaactgc gagccgagag aagtcgaatt tcctcgccgc cgccacgcac
      721 gatttgcggc agcccatgca cgcgctcaat ctcttcctgc aagctgccgc cgaagcgctg
      781 catcacgatg atgtaaccga agccgcccgg ctgatcgatg aatccggccg ttcatcggtg
      841 atccttgcgc gcttcctgaa cgcagtgctc gatctctcgc ggctcgagtc gggccgggtc
      901 gtgccgcgct atcacgtgtt cgacctcaag atcgccgtgc tggaagcggc cgaacaactg
      961 cgcccgctcg cggccatgca cggtgtcgaa ttgcggctgc gcatgcctca ggcgcccgtg
     1021 tatgtacgca gcgacgcgca ttggcttggg cgggctatcg tgaacctggt gtcgaacggc
     1081 attcgttacg ccgatgccag caagaaagcc gagcccgtgg ttattgtggg cgtggtgcgt
     1141 tcggccacgc gaacgcgcat tgatgtggtg gacaacggca ttggcattgc atcggaacat
     1201 tgggattcga tcttccagcc gttcttccag gtgggcaacg ccgaacagga caacgatcgg
     1261 ggactgggtc tcggtctgtc gatcgtgaac gccgtcgtgt ccatcctgga ggagcatcgg
     1321 atcgagttga aatcgaccga aggacgcggt tcgcgcttct cgctcgaaat gcccatttgc
     1381 ggttcgcctc tcggcgaagc cgcgccgcgt gcgcggggtg agaccgccga tatgcagacc
     1441 gtgccgctgg acgggctcta tgtgttgctg gtggaggacg acagcctcgt gcgtgcatcg
     1501 acggaagcgt tgctcgtgca gtggggcatg ctattcgact ccgcgagcag cttcgaagag
     1561 ttcgaggaga cgctggacac catcgaacgt tatccggatc tcatcatcac ggatttccgt
     1621 ctgcgcgatt cgaaaacagc acgcgacgtg gccatgctca gtgcggtgaa aattgggcgg
     1681 cgctgcccgt gcctggtcgt caccggcgag ccggctgcga ccattgtccc gctcgcatgc
     1741 gatcacgacg t
//
LOCUS       DATGBK010001424         1939 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_248225, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001424 DATGBK010000000
VERSION     DATGBK010001424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248225"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..863
                     /locus_tag="VKJ77_19835"
     CDS             <1..863
                     /locus_tag="VKJ77_19835"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HMC47579.1"
                     /translation="DYAAWQREQLTPVRVRDEQQFWRMYLANAPHFLALPADRPRPPI
                     ASHDGGTAHLTLSPETGARVRALASARGMTPFAVLLASFQLFLHRLTGQTDLLIGTDV
                     AGRDRTELEGLVGFFINVLPVRSRITADGANTASFNAWLDTAKHSAWEALEHRVFPFD
                     RIVDALGVSRRRDSNPLLQLLFVLRDLPRKNTSVPGLSIELLRAQTTQSKFDMALFVE
                     PVDGGYEVEWVYASSLFEQSTVERWFGLWRDLLDQVSADPDARLDLVRPLPDYSPDAM
                     LHRVAEAISQ"
     gene            881..1888
                     /locus_tag="VKJ77_19840"
     CDS             881..1888
                     /locus_tag="VKJ77_19840"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HMC47580.1"
                     /translation="MNATPITDACVETSFFNSGTRLPIVLTPTAPISDLPGWIDAHRD
                     KLETWLTRHGAILFRDFGLSGPAAFEAFAEAISPALYGEYGDLPKKEGGRNTYRSTPY
                     PERQMILYHNESSHLSRWPRRQFFFCELASVSGGATPIVDCREMLRQLPAQLVDTFER
                     KQLMYVRTFTRGLDVPWREFFDTDDRSAVEARCDAAGVQYEWLPNDELQTRTVCPAVI
                     VHPLTGERSFFNQVQLHHIACLAPDVRMDLLDMVGLERMPRHAYFGDGSTISDDDIAL
                     IGAAYERCAVRFDWHAGDVLMLDNMLVAHARDPYQGPRKIVVAMSELVERSHFARSGA
                     V"
BASE COUNT          348 a          615 c          580 g          396 t
ORIGIN      
        1 ctgactacgc tgcgtggcag cgcgaacaac tgacccctgt gagggtacgt gacgaacagc
       61 agttctggcg catgtatctg gcgaatgcac cgcacttcct ggccttgccg gctgaccggc
      121 cgcgtccgcc gatcgcttcc cacgatggcg gcacggcgca cctgacgtta tctcccgaga
      181 ctggcgcgcg ggtcagggcg ctcgcaagcg cacgcggcat gacgccgttc gcggtgctgc
      241 tcgccagttt ccagttgttc ttgcatcgcc tgacgggcca gaccgacctt ctgattggaa
      301 ctgacgtagc agggcgcgac cggaccgaac tcgaagggct cgtcggtttt ttcatcaacg
      361 tgttgccggt ccgctcgcgc ataaccgccg atggcgccaa cacagcgagc ttcaacgcat
      421 ggctcgacac cgcgaagcat tcagcttggg aagcgctaga acatcgggtg ttcccattcg
      481 accggatcgt cgatgcgctt ggcgtgtcgc gccgccgtga ctcgaacccg ctgctgcaat
      541 tgttgttcgt actgcgcgac ctgccgcgca aaaacacgag cgtgcccggt ctttcgatcg
      601 aactgctgcg agcgcagaca actcaatcga aattcgacat ggcgctgttc gtggagccag
      661 tcgatggtgg ttacgaagtc gaatgggtct acgcatcgtc gctattcgag cagtccacgg
      721 tggagcgctg gttcgggttg tggcgtgact tgctcgacca ggtatcggcc gatccggatg
      781 cgcggctcga tctcgtccga ccgcttcccg actactcgcc cgacgccatg cttcatcgcg
      841 tagctgaagc catttcgcaa tgaacgagag ccactcatct atgaacgcga ccccgatcac
      901 cgacgcttgc gtcgagactt cctttttcaa ctccggcacg cgcttgccca tcgtcctgac
      961 accgactgct ccgatcagcg atttgcccgg ctggatcgac gcacatcgcg acaaactgga
     1021 gacatggctc acccgccacg gcgctatcct gtttcgcgat tttggcctat cggggcctgc
     1081 cgctttcgaa gccttcgccg aagccatatc accggcgctg tatggcgaat acggcgacct
     1141 gccaaagaag gagggcggcc gcaatacgta tcgctcaacg ccgtaccccg agcggcagat
     1201 gatcctctac cacaacgaaa gttcgcacct gtcgcgctgg ccgcgtcgac agtttttctt
     1261 ctgcgaactg gcgtctgtgt cgggcggtgc tacaccgatt gtcgattgcc gcgagatgct
     1321 gcggcagttg ccggcgcaac tggtcgatac cttcgagcgc aagcagttga tgtacgtgcg
     1381 cacctttact cgcggtcttg atgtgccgtg gcgcgagttc ttcgataccg acgaccgaag
     1441 cgcagtcgaa gcacgctgcg atgcggcggg tgtccagtac gaatggctgc cgaacgacga
     1501 gttgcagaca cgcaccgtgt gtccggcggt gatcgtgcat ccgctgaccg gcgagcggtc
     1561 gtttttcaac caggtgcagt tgcatcacat tgcgtgcctc gcgccggacg tccggatgga
     1621 tctgctcgat atggtcggac tcgagcgcat gccgcgacac gcgtatttcg gcgacggcag
     1681 cacgatcagc gacgacgaca tcgcgttgat cggcgccgcg tacgagcgct gtgcggtgcg
     1741 tttcgactgg cacgccggcg acgtgctgat gctcgacaac atgctcgtcg cgcacgctcg
     1801 cgatccgtat caggggcctc gcaagattgt cgtggcgatg agcgagctgg tcgaacgctc
     1861 gcacttcgca cgttccggcg ccgtctgacg tacgcgctta ttcccccatt ccccataaag
     1921 aaagcaggct acatatcat
//
LOCUS       DATGBK010001425         2409 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_340765, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001425 DATGBK010000000
VERSION     DATGBK010001425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2409
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340765"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..597)
                     /gene="hda"
                     /locus_tag="VKJ77_19845"
     CDS             complement(<1..597)
                     /gene="hda"
                     /locus_tag="VKJ77_19845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0032297 - negative regulation of
                     DNA-templated DNA replication initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HMC47581.1"
                     /translation="MPVQRQLTLDLGTPPLATFDNFFAAGNHELVTRLRELDGALAAG
                     PVADRTFYVWGEAGSGRSHLLQALVHEANGRARFLSPQAPLAAFTFDPTASIYAIDDC
                     ERLSGAQQIALFNLFNEVRAHPASSLVATGNVAPLGLSVREDLRTRLGWGLVFQLTPL
                     SDESKASALKHAARERGIALADDVPAYLLTHFRRDMPSL"
     gene            832..1887
                     /gene="purM"
                     /locus_tag="VKJ77_19850"
     CDS             832..1887
                     /gene="purM"
                     /locus_tag="VKJ77_19850"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010116949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HMC47582.1"
                     /translation="MNQPKSAPDAQGLSYRDAGVDIDAGDALVDRIKPFAKKTMRDGV
                     LGGIGGFGALFEVPKRYKEPVLVSGTDGVGTKLRLAFQLNKHDTVGQDLVAMSVNDIL
                     VQGAEPLFFLDYFACGKLDVDTAATVVQGIAQGCELAGCALIGGETAEMPGMYPDGEY
                     DLAGFAVGAVEKSKIIDGSTIQPGDVVLGLASSGIHSNGYSLVRKIIERAQPDLNADF
                     DGRSLADALMAPTHIYVKPLLSLMSQMAVKGMAHITGGGLVENIPRVLRDGLTVELDH
                     RAWPLPPLFSWLQKHGGVADAEMHRVFNCGIGMVVVVAAGDAEAATGLLSAAGEQVWS
                     IGVVRDSLPGEAQTVVV"
     gene            complement(1935..>2409)
                     /locus_tag="VKJ77_19855"
     CDS             complement(1935..>2409)
                     /locus_tag="VKJ77_19855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="C-terminal helicase domain-containing protein"
                     /protein_id="HMC47583.1"
                     /translation="EEGRRVLLFSQFTGMLAIIAAALDKAGLPYVTLTGDTTDRITPV
                     TRFQDGEVPLFLISLKAGGVGLNLTAADTVIHYDPWWNPAAENQATDRAHRIGQLKPV
                     FVYKLIVAGSIEERIVAMQGRKAALADSILREDAAGAAKFSAEDIEALLAPMPAV"
BASE COUNT          441 a          694 c          785 g          489 t
ORIGIN      
        1 caggctgggc atgtcgcgtc gaaaatgcgt gagcagataa gcagggacgt cgtcggcgag
       61 cgcgatgccg cgctcgcgcg ccgcgtgttt cagcgcgctg gccttgcttt cgtcggagag
      121 gggcgtgagc tggaaaacca gtccccagcc gaggcgcgtg cgcaaatctt ctctcaccga
      181 taaccccagc ggcgccacat tgcccgttgc caccagcgag ctggccgggt gcgcgcgcac
      241 ctcgttgaac aggttgaaga gcgcgatttg ctgcgcgcct gagagccgct cgcagtcgtc
      301 aatggcgtag atgctcgccg tggggtcgaa cgtgaaggcg gccagcggcg cttgcgggct
      361 cagaaagcgc gcccggccgt tcgcttcgtg caccagcgct tgcagcagat ggctgcggcc
      421 actgcctgct tccccccaga cgtagaaggt ccggtcggct actgggccgg ctgcgagcgc
      481 accgtcgagt tcgcgcagac gggtcaccag ttcgtggttg ccggcggcga aaaaattatc
      541 gaaggtggcg agcggcggcg tgccgagatc gagcgtcagt tggcgttgca cgggcaatcg
      601 gttccgtcag gggcgtatct tgaaaagcgg cgcgctcagc ttggccgatg cccggtttat
      661 gccgtggcga aaggcgttga gcgcagggtc gagtttccag ccggatgggc gcgagtctcg
      721 aaaagggttt ggtgcggtct ttcggagtca gggccgcgaa ctgcgagaaa tccggccggg
      781 cggctggcat cggttaaaat ctcattttac cgaccttctc gccgatcccc catgaatcaa
      841 ccgaaatccg ccccagacgc ccaaggtttg tcctatcgcg acgcgggcgt ggacatcgat
      901 gccggcgacg cgcttgtcga ccggatcaag ccgtttgcca agaaaaccat gcgcgacggc
      961 gtgttggggg gaattggcgg attcggcgcg ctgtttgaag tacctaaacg atacaaagag
     1021 cccgtgctgg tatccggcac ggacggcgtg ggtacgaagc tgcggctggc tttccaactg
     1081 aacaagcatg acacggttgg ccaggatttg gtcgccatga gcgtcaacga tatcctggtg
     1141 cagggtgccg agccgttgtt tttcctcgat tatttcgctt gcggcaagtt ggacgtggat
     1201 acggctgcga cggtggtgca ggggattgcg caaggttgcg agctggccgg gtgcgcgttg
     1261 attggcggtg aaaccgctga aatgccgggc atgtatccgg acggtgagta cgatctggcc
     1321 gggtttgcgg tgggcgcggt tgagaagagc aagattatcg atggctcgac cattcagccg
     1381 ggtgacgtcg tgttgggcct tgcttcttcc ggcatccatt caaatgggta ttcgctggtg
     1441 cgcaagatca ttgagcgtgc gcagcctgac ctgaatgccg atttcgatgg ccgttcgctc
     1501 gccgacgcct tgatggcgcc tacgcatatt tacgtgaagc cgttgttgtc gctgatgtcg
     1561 cagatggccg tcaagggtat ggcgcatatc accggcggcg ggctggttga gaatattccg
     1621 cgagttctgc gcgatggcct gacggttgag ctggatcacc gggcgtggcc gttgccgccg
     1681 ttgttctcgt ggctgcagaa gcatggcggc gtggctgacg cggaaatgca tcgggtgttt
     1741 aactgcggga tcgggatggt cgtggtggtg gccgctggcg acgctgaagc cgcgacgggc
     1801 cttttgtccg ctgctggcga gcaggtttgg tcgatcggcg tggtgcggga ttcgctgccg
     1861 ggtgaagctc agacagtagt agtttaaatt ttcattagcg ccggtgggat tcaccggcgc
     1921 caatgaacaa cgactcaaac cgctggcatt ggcgccagca acgcctcaat atcctcggca
     1981 gaaaacttcg ctgctccggc cgcgtcctca cgcaaaatac tatcggcgag cgcggcttta
     2041 cggccctgca ttgccacaat ccgttcttca atactccccg ccacaatcag cttatagacg
     2101 aacaccggtt tcaattgccc aatccgatgc gcccgatccg tcgcctgatt ctccgccgcc
     2161 ggattccacc acggatcgta atgaatcacc gtgtccgcag cggtcagatt caaccccaca
     2221 ccgcccgcct tcaagctgat caggaacaac ggcacctcgc cgtcctgaaa acgcgtcacc
     2281 ggcgtaatcc gatcagtcgt atctcccgtc aatgtgacgt acggaagccc ggctttatcg
     2341 agcgcggcag caataatcgc cagcatcccg gtgaactgcg aaaacagcag cacccgacgc
     2401 ccttcctcg
//
LOCUS       DATGBK010001426         1604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_86014, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001426 DATGBK010000000
VERSION     DATGBK010001426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86014"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            285..605
                     /locus_tag="VKJ77_19860"
     CDS             285..605
                     /locus_tag="VKJ77_19860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009905783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mpo1-like protein"
                     /protein_id="HMC47584.1"
                     /translation="MAQTAHSDHFASFAEFYPYYLGEHLNVVSRRLHFIGSLGVIGCL
                     AMAVATGDWLWLPAAVICGYGFAWVGHFFFEKNRPATFRHPLYSLMGDWVMFKDICIG
                     RISL"
     gene            complement(629..>1604)
                     /locus_tag="VKJ77_19865"
     CDS             complement(629..>1604)
                     /locus_tag="VKJ77_19865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YhjD/YihY/BrkB family envelope integrity
                     protein"
                     /protein_id="HMC47585.1"
                     /translation="TMMTVESAFNVIWRVRKSRPFAQRVLVYWAIITLGPILFGVSLS
                     MSSYLFAQSIAFAGSHNLLPPVVEWALASATLPFTMLAFSMLYVFLPNCKVEWRDALV
                     GGLVAAIAFELAKRGFGYYVRRIPTYTAVYGAFAALPVFLLWVYLCWMITLIGAMLTS
                     ALPAIRIGQFHRNDFPGSDLLDALELLARLAEAREAGLPGYTGLELARMLRCDMDTSM
                     RLVRKLDALEWIARLENLRVPRYVLIANPQQITVASLFDLFVIEREELDYQLRLDSSH
                     IDRAVLMNALSNEKLEVTLATLLAARAASRQEGARAAQEVTSMPQQAA"
BASE COUNT          351 a          494 c          459 g          300 t
ORIGIN      
        1 acgccgggca cgcactgatg agcgaacaac ccgatacgac cctcaccgcg ttattcggtt
       61 ttgcaacgca agccgtttag gtgacagatc gctttgcggc tcaggcttac ggacttcgcg
      121 catgaaccca gcttaaccgc cctctccccg ctccgtcatc agccgaatgg gaggggcctc
      181 caactgtttc cagatcggta ggaatcgtgg ttgcgcagtg gactcaatcg ccggagaatg
      241 aatcttgctg agccaatgct gcaacctgct cgaaggagac tgtcatggcc caaaccgcgc
      301 attccgatca cttcgcgagt ttcgccgagt tctatccgta ctaccttgga gagcacctta
      361 acgtggtgtc gcgccggctg cacttcatcg ggtcgctggg cgtgatcggc tgccttgcaa
      421 tggctgttgc cacgggcgac tggctctggc ttcccgctgc cgtgatttgc ggctacggct
      481 ttgcctgggt cggccatttc ttctttgaga aaaaccgtcc ggcgacgttt cgccatccgc
      541 tctacagcct gatgggtgac tgggtcatgt tcaaggacat ctgcatcggc aggatttcgc
      601 tttagcgcgc ctcgggacgc ggggcgcttc aggcggcttg ctgcggcatg gacgttacct
      661 cttgcgccgc acgagcgcct tcttgacgag acgcggcgcg cgccgccagc agcgtggcca
      721 acgtgacctc aagcttctcg ttgctcagtg cgttcatcaa tacggcgcgg tcaatgtgcg
      781 aggaatcgag gcgcaactga taatccagct cttcgcgctc gatcacgaac aaatcaaaca
      841 gactcgccac cgtgatctgt tgcggattgg cgatcagcac atagcgcggc acccgaaggt
      901 tctccagcct cgcaatccat tccagagcgt cgagcttgcg aaccaggcgc atggaggtat
      961 ccatgtcaca gcggagcatt cgtgcaagct cgaggccggt ataacccggc aggccagctt
     1021 cacgtgcctc cgcaaggcga gcgagcaact cgagggcatc gagcagatcg ctccccggaa
     1081 aatcatttcg atgaaactgg ccaatccgga ttgccggcaa cgcggacgta agcatcgcgc
     1141 cgatcagcgt gatcatccag cacaaataga cccataacaa gaacacgggc aacgccgcga
     1201 acgcgccgta cacggcggta taagttggaa tacggcgcac gtaataaccg aaaccgcgct
     1261 tcgccaattc gaacgcgata gccgcgacaa gtccaccaac cagcgcatcg cgccactcca
     1321 ctttgcaatt cggcaggaac acatagagca tggagaacgc cagcatcgtg aacggcagcg
     1381 tcgcgctggc gagcgcccac tcgaccaccg gcggcagcag attatgggag ccggcgaatg
     1441 cgatggattg cgcgaacagg taggacgaca tcgacagact cacgccgaac agaataggcc
     1501 cgagcgtgat gatggcccaa tacaccagga cacgttgagc gaacggacgc gattttcgca
     1561 cgcgccagat cacgttgaac gcggactcga cagtcatcat ggtc
//
LOCUS       DATGBK010001427         2915 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_155656, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001427 DATGBK010000000
VERSION     DATGBK010001427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155656"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..770
                     /locus_tag="VKJ77_19870"
     CDS             <1..770
                     /locus_tag="VKJ77_19870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lysophospholipase"
                     /protein_id="HMC47586.1"
                     /translation="HGLAEHARRYDAFALRLNAVGIELIAADLRGHGKSPGERVWINS
                     FDDYLLDTDALLNAADTTAPLKIPLFLMGHSMGGAIAALYAAERLPDSGRKLAGLILS
                     SAALKPPADAPRWKLKLGGLISRLVPHFPALTIDPATLSRAHGVVEANRRDPLVHHRP
                     IPARTAAQIVAAMRRIAARRTSIDLPLFVFHGTKDALTNPDGSREFEANTGSTDTTLL
                     ILEGSYHETLNDLDRDRVIKALIDWTLVRAELKPSRM"
     gene            complement(813..1736)
                     /locus_tag="VKJ77_19875"
     CDS             complement(813..1736)
                     /locus_tag="VKJ77_19875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006750743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HMC47587.1"
                     /translation="MATGFYTHPDCLLHDMGPWHPECPARLQAIEDQLIASRIDTLIE
                     REEAPLASEEDLARVHTQAHIDFVKETAPSVGRAEIDPDTLMSPGSYHAALRAAGAAV
                     AATDAVIAGTYDNAFCSVRPPGHHAEPARAMGFCFFNNIAIAARHALEVHGLERVAII
                     DFDVHHGNGTEAAFSGDPRVLMCSFFQHPFYPYSGADNHASNMVNLPMPARTKGMAVR
                     EAVDMMWLPRLDEFKPQMIFVSAGFDAHREDDLGNMGLVEDDYTWLTQQIRAVAKRHA
                     KGRIVSSLEGGYNLSALGRSVVAHVRALADI"
     gene            2044..>2915
                     /gene="mltB"
                     /locus_tag="VKJ77_19880"
     CDS             2044..>2915
                     /gene="mltB"
                     /locus_tag="VKJ77_19880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HMC47588.1"
                     /translation="MNFKFASTVLPLSVRTARLASVAGLVCALGTLSIGQAVAQSQPQ
                     SAPAQGQMFEEEIVPQRYANNPNVDAFINDLVARYDFDSASLHDLFNRVSYSATAVKL
                     VLPSPTPATKNWRAYQGRFVEPIRIAAGEKFWRANQAALQRASDQYGVPPEAIVGIIG
                     VETIYGKYMGNFRALDALTTLTFDYPNTPNRAERQATFRKNLEDLLVWTHDQQIDPTT
                     VLGSYTGAIGIPQFLPSSIVQYAVDFDGNGHIDLRTSPADAIGSVANYLKQHGWESGR
                     PVVWKIAGDTGSQG"
BASE COUNT          542 a          946 c          873 g          554 t
ORIGIN      
        1 tgcacgggct ggccgaacat gcgcgccgct acgacgcctt cgcgctgcgc ctgaacgcgg
       61 tgggcatcga gttgattgcc gcggatctgc gtggccacgg taaatcgcca ggcgagcgcg
      121 tgtggatcaa ctcattcgac gactatctgc tcgacaccga cgcgctcctc aacgctgcgg
      181 acactaccgc gccgctcaag atcccgctgt tcctgatggg acatagcatg ggtggcgcca
      241 tagcagcgct ctatgctgcc gagcgcctcc cggacagcgg ccggaaactg gccgggctga
      301 tcctgtcgag cgctgcgctc aaaccgccgg ccgacgcgcc gcgctggaag ctcaagctgg
      361 gcggcctgat cagccgcctg gtgccgcatt tccccgccct gaccattgat ccggccacgt
      421 tgtcccgtgc gcacggcgtg gtcgaggcga accggcgcga tccgctggtg catcatcggc
      481 caataccggc caggacggcg gcgcagatcg tggcagcgat gcgccgcatc gctgcacgac
      541 gcacgtccat cgacttgccg ctgttcgtgt ttcacggcac gaaagacgcg ctcaccaacc
      601 ccgacggcag ccgcgaattc gaagccaaca cgggttccac ggataccacc ctgctgatac
      661 tggaaggcag ctatcacgag acgctcaatg acctcgaccg cgatcgtgtg atcaaggcgc
      721 tgatcgactg gacgctcgtg cgtgccgaac ttaagccttc gcgcatgtag ggttctcggg
      781 gctcgccgtg aggcttgcct tgaatcagcg gcttagatgt cggcgagcgc acgcacatgt
      841 gcgaccacgc tgcgcccaag cgccgacagg ttgtacccgc cctccagact actcactatc
      901 cggcccttcg catgccgctt cgccaccgcc cggatctgct gggtcagcca cgtgtagtcg
      961 tcctcgacaa gacccatgtt gccgagatcg tcctcgcgat gcgcgtcgaa acctgcggag
     1021 acgaagatca tctgcggctt gaattcatcg agtctcggca gccacatcat gtcgacggct
     1081 tcgcgcacag ccatgccttt cgtacgcgcg ggcatcggca gattgaccat gttcgatgcg
     1141 tgattgtccg cgccgctgta cggatagaac gggtgctgga aaaagctgca catcagcacg
     1201 cgtggatcgc ccgagaacgc ggcctccgtg ccgttgccgt gatgcacgtc gaaatcgatg
     1261 atagccacgc gctcgagccc gtgcacttca agcgcgtgac gcgccgcgat cgcgatgttg
     1321 ttgaagaagc agaagcccat cgcgcgcgcc ggttccgcgt gatgtccggg cggccgcacg
     1381 ctacaaaacg cgttgtcgta ggtgccggca atcacagcgt cggtggcagc gaccgccgcg
     1441 cccgcagcgc gcaacgccgc gtggtaagaa cccggcgaca tcagcgtgtc cggatcaatc
     1501 tccgcgcggc ccactgaggg agccgtctcc ttcacgaaat cgatatgcgc ctgcgtatga
     1561 acccgcgcca ggtcctcttc gctcgcgagc ggtgcttctt cacgctcgat cagggtgtcg
     1621 atacggcttg caatcaactg atcctcgatc gcctgaaggc gcgcggggca ctcgggatgc
     1681 cacgggccca tatcgtgaag aaggcaatct ggatgggtat aaaagccggt agccatgatg
     1741 ggttgcgcag ccggacgtgc cgtaccgcgt gtctcgtatc gttcagatgt ttttgtcggt
     1801 cgcggtgcac gcccttcctg ccgcgcgcca gctagcggcc gaacgccgca ccgcgcgggt
     1861 tcttgttaag ttaccacact ggaaatgacg cgcccgatca gcaccgcttt tgcagcgtcc
     1921 gcgcccgctc gcagggcttt cgggatagcg tcgaaaacgc gtcggttata ctgatctgac
     1981 tctcgtatgc cctgcgcgtt tttccagcgc gcctcgcgtt acaccgccac aattacgcac
     2041 actatgaact tcaagtttgc ttcgaccgtc ttgcctcttt cggtgcgaac cgcgcgcctc
     2101 gcctcagtcg ccggccttgt ttgcgcactt ggcacactca gtatcggcca ggcagttgca
     2161 caatcgcagc cgcaatccgc accagcgcaa gggcagatgt tcgaagagga gatcgtgccg
     2221 cagcgttacg cgaacaatcc caatgtggat gcgttcatta acgatcttgt tgcgcgttac
     2281 gacttcgatt ccgcctcctt gcacgacctg ttcaatcgcg tgagttattc ggcaacggcc
     2341 gtgaaactgg tgctgccctc gcctacgcca gccaccaaga actggcgcgc gtatcagggg
     2401 cgtttcgtag agcccatacg cattgccgcc ggtgagaaat tctggcgcgc gaaccaggcc
     2461 gctttgcagc gtgcgtctga tcagtacggc gtgccgcctg aagcgattgt cgggatcatt
     2521 ggcgtggaaa ctatctatgg caagtacatg ggtaacttcc gggcgctcga tgcgctgacc
     2581 acgctcacct ttgattatcc caacacgccg aaccgcgcag aacggcaagc gacgttccgc
     2641 aagaatctcg aggacctgct cgtgtggacg cacgaccagc aaatcgatcc gaccaccgtg
     2701 ctcggttcgt acacgggcgc aatcggcatt ccgcaattcc tgccgagcag catcgtgcag
     2761 tacgcggttg atttcgacgg taacgggcac atcgatttgc ggaccagtcc cgccgatgcc
     2821 atcggcagtg tcgcgaacta tctgaagcag cacggctggg aatcgggacg gccggtggtc
     2881 tggaagattg ccggcgacac gggcagccaa ggcat
//
LOCUS       DATGBK010001428         2222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_178597, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001428 DATGBK010000000
VERSION     DATGBK010001428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178597"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1057)
                     /locus_tag="VKJ77_19885"
     CDS             complement(<1..1057)
                     /locus_tag="VKJ77_19885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012416013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00366 family protein"
                     /protein_id="HMC47589.1"
                     /translation="MQKITGFFTELMRKYLPDPFVFAIGLTLLTMILAVLVQGQGIVA
                     LTTSWGKGFWTLLAFTTQMAVILAMGYVLATAPLTERFLDRIVMRVHDPRMAIIVATL
                     VGGIGSYLNWGFGLVIGGIVARKLALSVKGVHYPLIIASAYSGFTLYGLGLSASIPVL
                     ISTKGHPMEAQMGVIPLSETIFSPTMLVTSLVVLITLPLLNAWLHPKPGQPVTEIDRA
                     LEERTRAAQAAVPVDAGDEHTFASRLNNSRLLSGLIGLIGVVYVVLYFHGGGTMDLNL
                     INFIILFLGIILLGTPIRYVEKLNEGIRTISGIILQYPFYAGIMAIMASSGLVNTFSE
                     FFVKIATPHTLPFWGLIS"
     gene            complement(1137..2096)
                     /locus_tag="VKJ77_19890"
     CDS             complement(1137..2096)
                     /locus_tag="VKJ77_19890"
                     /EC_number="1.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HMC47590.1"
                     /translation="MSTADMRRVAIVGAGSIGVAFAVVFARAGWPVRLFDPDVSRRDA
                     APGEIKQRLNELARFGLLDEAADAVAARVQMAASIETAVADADFVQECAPERVDIKRA
                     LFAQLDAAAPETAIFASASSALTASSFVGDLAGRHRCLIAHPGNPPYLIPVIEIVPAP
                     FTAPDVTKRTLQLFRDAGLQPVLVSKEVEGFVFNRLQGAVLREAYCLVRDGVATVEDI
                     DTVMRDGLGLRWSVIGPFETVDLNTRGGISSHAQKMGPAYERMGAERGQHDPWTPELV
                     EMVAAARRAAVPLEQWEERVAWRDRALMALARHRRLATSGNDS"
     gene            complement(2098..>2222)
                     /locus_tag="VKJ77_19895"
     CDS             complement(2098..>2222)
                     /locus_tag="VKJ77_19895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003062025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC47591.1"
                     /translation="VGTPEDIAHAVSYFLDARSGFVTGQVLYVCGGMTVGVAGV"
BASE COUNT          468 a          708 c          637 g          409 t
ORIGIN      
        1 aactgatgag accccagaac ggcaacgtat gcggcgtcgc aatcttgacg aagaattcgg
       61 aaaacgtgtt gaccagtccc gacgacgcca tgatcgccat gatgcccgcg taaaacggat
      121 attgcaggat gatgccgctg atcgtacgga tgccttcgtt gagtttctcc acgtaacgga
      181 tcggcgtgcc cagcaagatg atgccgagaa acaggatgat gaagttgatc agattcaggt
      241 ccatcgtgcc cccgccgtgg aaatacagca ccacgtagac cacgccgatc aatccgatca
      301 agccgctcag caaccggctg ttgttcaggc ggctggcgaa cgtgtgttcg tcgccggcgt
      361 cgacgggaac ggccgcttga gctgcccgcg tgcgttcctc aagcgcacgg tcgatctcgg
      421 tcaccggctg gcccggcttc ggatgcagcc acgcattgag caagggcagc gtgatcagca
      481 cgaccaggct ggtaacgagc atagtcggcg aaaagatggt ttccgagagc ggaatcacgc
      541 ccatttgcgc ttccatcggg tgacctttgg ttgagatgag cacgggaatg ctcgccgaca
      601 aaccgagacc gtaaagcgtg aaaccgctat aggccgacgc aatgatcaac gggtaatgca
      661 cacccttcac gctgagcgcc agcttgcgcg cgacaatgcc gccgatcacc agcccgaagc
      721 cccagttgag gtaactgccg atgccgccca ccagcgtcgc gactatgatc gccatgcgcg
      781 gatcgtgcac ccgcatcacg atgcgatcga ggaatcgctc ggttagcggt gctgtcgcga
      841 gcacgtaacc catcgcgagg atcacagcca tttgcgtggt gaatgcgagg agcgtccaaa
      901 agcccttgcc ccagcttgtt gtcagcgcca cgatgccctg gccctgcacc aatacggcaa
      961 ggatcatggt gaggagggtt agcccgatgg caaatacaaa cggatcgggc aaatacttgc
     1021 gcatcagttc ggtgaagaat cccgttattt tctgcattgc catgtctctg aagttttatt
     1081 tagtttagcg aattgttcag tcatgtccgg ctgggaagag gctggtggct cggcgctcag
     1141 gaatcgttgc ctgaagtcgc caaccgccgg tggcgagcca gcgccatcaa tgcgcgatcg
     1201 cgccatgcca cgcgttcttc ccattgttca agcggcaccg ccgcgcgcct tgccgcggcc
     1261 accatctcga ccaactccgg tgtccacgga tcgtgctgtc cgcgttccgc acccatccgt
     1321 tcgtatgcag gccccatctt ctgcgcgtgc gaactgatgc cgccgcgcgt attcagatcc
     1381 accgtttcga atggtccgat cacggaccac cgcaagccga ggccgtcacg catgaccgtg
     1441 tctatgtcct cgaccgttgc aacgccgtcg cgcacgaggc aatacgcttc gcgcagcacg
     1501 gcgccctgca atctgttgaa gacgaacccc tcgacttctt tcgataccag cacgggttgc
     1561 aggccagcat cgcggaaaag ctgtagcgtg cgtttcgtga cgtcaggcgc ggtaaaaggc
     1621 gcgggcacaa tttcgatcac gggaatcaag tacggtggat tgcccggatg cgcaatcagg
     1681 caacgatgcc ttccggccaa gtcgccaaca aagcttgagg ccgtcaaagc cgatgaagcg
     1741 ctggcgaaga tcgccgtctc gggcgccgca gcgtcgagtt gcgcaaacag tgcacgcttg
     1801 atgtccaccc gctcgggtgc gcactcctgc acgaaatccg cgtcggcaac tgctgtttct
     1861 atggacgctg ccatctggac ccgcgccgcc accgcgtcag ccgcttcgtc gagcaatcca
     1921 aagcgcgcta gttcattcag gcgctgcttg atctctcccg gtgcagcgtc gcggcgcgac
     1981 acgtctggat cgaagagacg cacgggccat cccgcgcgcg caaacaccac agcgaacgcg
     2041 acgccgatac ttcccgcccc cacgatcgcc acacgccgca tatcagccgt gctcatctca
     2101 aactcccgct acgccgaccg tcatcccgcc gcagacatag agcacctggc cggtgacgaa
     2161 gccgctgcgg gcatcgagga aataggacac tgcatgcgcg atatcttccg gcgtacccac
     2221 gc
//
LOCUS       DATGBK010001429         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_202303, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001429 DATGBK010000000
VERSION     DATGBK010001429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202303"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..550
                     /locus_tag="VKJ77_19900"
     CDS             <1..550
                     /locus_tag="VKJ77_19900"
                     /inference="COORDINATES: protein motif:HMM:NF014907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HMC47592.1"
                     /translation="GAQVLVQGKAAGRSAAALALSRSDEAVNLVAHEQWRAVQARIKA
                     PFERPDGIAPFDMKRRLGQLVDGALGAVRDGAGLAKALDEVRAISRDDLSRFACRNRD
                     AGWNRDWSDALECMSALPVIESALLSALARTESLGAHRRHDRKKQAATAALEHGLISR
                     QAGSHALLHRAEPVGFPFLAPA"
     gene            568..948
                     /locus_tag="VKJ77_19905"
     CDS             568..948
                     /locus_tag="VKJ77_19905"
                     /inference="COORDINATES: protein motif:HMM:NF024485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HMC47593.1"
                     /translation="MTMVIHLHRTPGDDTASTYILPSPEEAGIGASDWSGVSVSSALQ
                     YLQRAVDPALAFSLSCRRGLCNVCAMRIDGVVTTACTTPMRDGILIEPARSTLLLRDT
                     VIELSLVRRARMDAVTPLAGERDG"
     gene            941..>1689
                     /locus_tag="VKJ77_19910"
     CDS             941..>1689
                     /locus_tag="VKJ77_19910"
                     /inference="COORDINATES: protein motif:HMM:NF019619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HMC47594.1"
                     /translation="MADAVVIRHLERLLSPRLVEDFRRGVVPDKAAATHDTLERLPEV
                     LRQPQLASFAALSRAYRGPVAFGRGLRFPQVFDAGANAANLRQLGLTVYLRDIAPYAA
                     GGHTFLRELETELGIAQGSARLTAFSSPHDDGVACHYDAEEVISVQMEGSKTFYVAPM
                     AEIPQPYGSQFGPRMAASEDMYAQTREAFPDASRATFDAIRMTPGSVLFLPRGTWHRT
                     EATEDSYSISIVLRPPTLLETLQQQLQGLLL"
BASE COUNT          293 a          524 c          562 g          310 t
ORIGIN      
        1 gggagcgcaa gtgctggtgc agggtaaggc cgcaggacgt tcagccgcgg cgcttgcgct
       61 cagccggtct gacgaggcgg tgaatcttgt cgcacatgaa caatggcgtg cggtgcaggc
      121 ccggatcaaa gccccgttcg agcgccctga cggaatcgcc cccttcgata tgaaacggcg
      181 tctcggtcaa ctggttgacg gcgcgctcgg ggctgtgcgc gatggagcgg ggcttgcaaa
      241 ggcattggat gaagtacgcg ccatttcgcg cgacgacctc tcacggttcg cttgccgcaa
      301 tcgcgatgcg ggttggaacc gcgactggag cgatgcgctc gaatgcatgt cggcgctgcc
      361 tgtgattgaa agcgcgctgt tgtctgcgct tgcgcgcaca gagtcgctcg gcgcacatcg
      421 ccggcacgac cggaaaaagc aagccgcaac ggctgcactg gaacatggcc tgatctcgcg
      481 gcaagcgggc tcgcatgcgc tgcttcatcg cgccgagcca gtcgggtttc cctttctcgc
      541 gccggcatga aagcgaacag tgcatcgatg acaatggtca tccatctcca ccggacgccc
      601 ggcgacgaca ccgcgagcac gtatatcctc ccgagtcccg aggaagccgg cattggcgcg
      661 agcgactggt caggtgtgag cgtatcgagc gcgttgcagt atttgcagcg tgccgttgat
      721 ccggcgctcg cattctcatt gtcgtgccga cgcggcttgt gcaacgtgtg cgcgatgcga
      781 atcgacggtg tggtgaccac tgcgtgcaca acgccgatgc gcgacggcat cctgatcgag
      841 ccggcgcgaa gcaccttgct gctgcgcgac actgttatag aactgagcct cgtgcggcgc
      901 gcgcgcatgg acgccgtcac accgctggcg ggcgagcgcg atggctgatg cggtcgtcat
      961 acggcatctc gagcgccttc tttcgccacg gctggtggag gactttcgaa ggggtgtagt
     1021 gcccgacaag gccgccgcta cgcacgacac gctcgagcgc ttgccagagg tactgaggca
     1081 gccccaactc gcaagcttcg ctgcgctgtc gcgcgcttat cgcggcccgg tggcgttcgg
     1141 gcgcggtctg cgcttcccgc aggtcttcga cgcaggcgcg aacgccgcca atctgcgcca
     1201 gctgggcctg acggtttatt tgcgcgacat cgcgccgtac gcggcgggcg gccatacctt
     1261 cctgcgcgag ctggaaacgg aattgggtat cgcacaagga agcgctcgcc tgacggcgtt
     1321 ctcgtcgccc catgatgacg gtgtcgcctg ccactacgac gcagaagaag tgatctcggt
     1381 gcagatggaa ggcagcaaga cgttctacgt cgcaccgatg gccgaaattc cccagccgta
     1441 cggctcgcaa tttggccccc ggatggcggc ctcagaggac atgtacgcgc aaacgcgcga
     1501 ggcgtttccg gacgcgtcgc gggcgacctt tgacgcgatc aggatgacgc ccggctccgt
     1561 gctgtttttg ccgcgcggta cgtggcaccg caccgaagcg acggaagact cgtattcgat
     1621 cagtatcgtg ctccggccgc ctactttgct ggagacgttg cagcagcagt tgcaaggact
     1681 gttgctgca
//
LOCUS       DATGBK010001430         1805 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_202306, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001430 DATGBK010000000
VERSION     DATGBK010001430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202306"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..767)
                     /locus_tag="VKJ77_19915"
     CDS             complement(<1..767)
                     /locus_tag="VKJ77_19915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC47595.1"
                     /translation="MKHVVAYRPLPPAVLDVLRQHCSVDVVDVSSGGDLAPFRRALAS
                     AQGIIGNNLKITPDLLDAAPLLEATSTISAGFDAFDVPELSRRGILLTNTPDEVTETT
                     ADLVFSLILATARRISELADWTRRGQWTRSVGEAQFGVDVHHKTLGIVGLGRIGSAVA
                     KRAALGFGMDVIYSNRSRNPEAEKRYGAKWQPLPDLLSSADFVCLLVPLSYATERLIG
                     SAELGLMKPSAILINCSRGQVVDEAALIEHLRERRILG"
     gene            911..>1805
                     /locus_tag="VKJ77_19920"
     CDS             911..>1805
                     /locus_tag="VKJ77_19920"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HMC47596.1"
                     /translation="MNEKKSGLRQGLTNYGDEGFSLFLRKAFIKGAGYTDDALSRPIV
                     AIANTGSAYNPCHGNAPQLIEAVKRGVMLAGGLPVEFPTISIAESFSHPTSMYLRNLM
                     SMDTEEMIRAQPMDAVVLIGGCDKTVPAQLMGAAAAGVPAIQLVTGAMLTGSHRGERV
                     GACTDCRRFWASFRGDQIDEAEIEAVNNQLVATVGTCSVMGTASTMACIAEALGMMLP
                     GGASAPAVTADRIRIAERTGAQAVAMIGRDLSPATILTPKAFENALRVLLAIGGSTNG
                     IIHLTAIAGRLGIRIDLARLDQ"
BASE COUNT          382 a          502 c          605 g          316 t
ORIGIN      
        1 ccgagaatgc gtcgttcacg caagtgctca ataagggcag cttcgtcgac gacctgtcca
       61 cgggaacagt tgatgagaat ggcggacggc ttcatgagcc cgagttcggc gctgccgata
      121 agacgctcgg ttgcgtacga aagcggaacg agcaggcaga cgaagtcggc gctcgacagc
      181 agatccggga gtggctgcca tttcgcgcca taacgcttct ctgcttcggg attgcgagag
      241 cggttggaat agataacgtc catgccgaaa ccgagggcag cgcgctttgc gaccgcgctg
      301 ccgatgcgcc caagcccgac gatcccgagc gttttgtgat gcacgtcgac accaaattgc
      361 gcctcgccga cagaacgggt ccactgaccg cgccgggtcc agtccgcgag ctcggaaatg
      421 cggcgcgcgg tggcgaggat gagactgaag acgagatcgg cggtggtttc ggtgacttcg
      481 tctggcgtat tggtgaggag gatgccccgg cgcgagagtt cggggacgtc gaaagcgtcg
      541 aagccggccg agatcgtgga ggtggcctca agcaagggcg ctgcatcgag gagatcgggg
      601 gttatcttga gattgttgcc gatgattccc tgagccgagg caagcgcgcg ccgaaatggc
      661 gcgaggtcgc cgccggaaga aacgtcgacc acgtcgacgg agcagtgctg gcgaaggacg
      721 tccagcacgg caggaggaag cggacgatag gccacgacat gcttcatgaa atcctcggac
      781 gtatgctgtg caaataaagt ggaagggcgg cagatgacag acgaaaagaa ccgcttgcag
      841 aagcactata gatatcgtta agattgtcgt caagattatc aataatttta tcgaagagtt
      901 aggagcagcg atgaacgaga agaaaagtgg cttgcggcag ggcctgacga actacggcga
      961 cgagggcttc tcgctgtttt tgcgcaaggc attcatcaag ggtgcgggct atacggacga
     1021 cgccctgtcg cgcccgatcg tggccatagc gaacacgggc agcgcctaca acccctgcca
     1081 cggcaacgca ccgcaactga ttgaagcggt aaagcgcggc gtgatgctgg ctggcggctt
     1141 gccagtcgaa tttccaacga tctcgatcgc tgaaagtttt tcgcatccca ccagcatgta
     1201 tctccgcaac ctgatgtcga tggacacgga ggagatgatc cgggcccagc ccatggatgc
     1261 ggtggtgctg atcggcggct gcgataaaac cgtcccggcc caactgatgg gcgcggccgc
     1321 ggctggcgtt cccgccattc aacttgttac gggcgcgatg ctcacgggtt cgcatcgggg
     1381 cgaacgggtc ggggcatgca cggactgccg ccgcttctgg gcgagctttc gtggcgacca
     1441 gattgacgag gccgagatcg aagccgtcaa caatcaactc gtcgcaacgg ttgggacctg
     1501 ctccgtaatg ggcacggcaa gcacgatggc ctgcattgcg gaagccttgg ggatgatgtt
     1561 gccgggcggc gcgtcggcgc ccgccgtgac ggccgatcgc attcgcatcg ccgagcgcac
     1621 cggtgcgcag gccgtggcaa tgatcgggcg ggacttgagc cccgcgacaa tcctgacgcc
     1681 gaaagcgttc gaaaacgcgt tgcgggtgct gctcgcgatc ggcgggtcga ccaacggcat
     1741 cattcacctc acggcgattg ccgggcggct cggcattcgc atcgatcttg cacggctcga
     1801 tcaaa
//
LOCUS       DATGBK010001431         3365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_272005, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001431 DATGBK010000000
VERSION     DATGBK010001431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272005"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1163)
                     /locus_tag="VKJ77_19925"
     CDS             complement(<1..1163)
                     /locus_tag="VKJ77_19925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007749277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallo-hydrolase"
                     /protein_id="HMC47597.1"
                     /translation="MILNAPLKAASCIDASRLLESIETLARFGAREDGGVDRPALSPI
                     DLEARRFLIDRAIALGCTVRTDACANLFFRRPGLEDLPPVMTGSHVDTQPTGGKLDGS
                     YGVLAGFECVAALNDAGIRTRRPLEVVVWTNEEGTRFQPGAMGSSAFVDPALIERYGQ
                     AKDADGISLDSALAAHREAFPSLETRITERAAHAFVELHIEQGPLLELANVPLGVVKG
                     IQGVRWYAVRCKGVAAHAGTTPMHARHDAMTLAVCIRAEISAFAHQLGGDDTRITFGR
                     WTVLPNSINTIASDVTFSVDFRHPNPAVLHAFDRQLAACVAHHAVTSEALFMHPPVDF
                     APAVIQRVADACHALGASSLSITSGAFHDAMYLAKHCPSAMLFVPSRGGISHNP"
     gene            complement(1160..1963)
                     /locus_tag="VKJ77_19930"
     CDS             complement(1160..1963)
                     /locus_tag="VKJ77_19930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC47598.1"
                     /translation="MSSLPILELRAVGKSYGANRVLKAIDLSVTRGEIVSLIGPSGSG
                     KTTALRCMNFLEAYDEGEVWIKGQLLGYRSTGRSERDRDSEKSIAEVRRPVSMVFQQF
                     NLWPHMSVLGNVAAPLVLSKKTGKADAHKQALAALTRVGLAEKADAYPASLSGGQQQR
                     VGIARALAIEPEVMLLDEPTSALDPELVEEVLSVIRSLAQDGMTMVMVTHEMSFAAKI
                     SDHVVFMEAGQIVEAGPPEQIFGNTRTPRLQQFLKPWFDRSLTSVTGVA"
     gene            complement(1960..2613)
                     /locus_tag="VKJ77_19935"
     CDS             complement(1960..2613)
                     /locus_tag="VKJ77_19935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006028110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC47599.1"
                     /translation="MNSFLSLIPRFAEAILVTLEVSLLAALIGALVGFVLNALRLRFP
                     RWLAAPYRFYVWLVRGTPYLSQLVIVYFGLPVIGITMTAVQATIVSLAFYSAAYFAEI
                     FRAGWASIPRGHGEAARAFGISRWSAFRSIEMPQAIAFAIPLLANQTILVIKESAVAS
                     IITVPELTMTASDIVSSTYTYIAPYAMLIVCYWLLTQCIALAARWAQALIAPSRKTS"
     gene            complement(2621..3283)
                     /locus_tag="VKJ77_19940"
     CDS             complement(2621..3283)
                     /locus_tag="VKJ77_19940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC47600.1"
                     /translation="MNPPDLLARCLGYLPQLLDGAITTLWLSAIAVACGFFAGIFIYM
                     MSASKSRTLAIAARVYVSVFRGTPVLAQLLVFYYVPSGLGWAIPGVIAAAVGLSMNTA
                     AYQSQILGTGFRAIPRGQIEAAQTFNLTRRQTLWHVEIPQVVALTLPALVSEMIDIVK
                     ASAVVSVIAVTDLMRVGQQLSSVSYRPLEVYTLAACFYLAITSLLSLAGRGIERRMAR
                     RT"
BASE COUNT          711 a         1002 c         1061 g          591 t
ORIGIN      
        1 gggttgtgac tgatgccgcc gcgactcgga acaaacagca tcgcgctcgg gcaatgtttc
       61 gcgagataca tggcgtcgtg gaatgcgccc gatgtgatgc ttagcgaaga cgcaccgagc
      121 gcgtggcatg catcggctac acgctggatc acggcgggtg cgaagtccac tggcggatgc
      181 atgaacagcg cttccgatgt cacggcgtga tgtgcgacgc aagccgcaag ttgccgatcg
      241 aacgcgtgga gcaccgccgg gttcgggtgg cggaagtcga cggagaacgt gacgtccgat
      301 gcaatcgtgt tgatagagtt cggcagcacg gtccagcggc cgaaggtgat gcgggtatcg
      361 tcaccgccta gctggtgcgc gaaggccgag atctcggcac gaatgcatac ggcgagcgtc
      421 atggcgtcgt ggcgggcgtg cattggtgtg gtgccggcgt gtgccgcgac gcctttgcaa
      481 cgcaccgcat accaacgcac gccttgaatt cccttcacca cacccaatgg aacattggcg
      541 agttccaata ggggcccttg ttcgatatgc aattcgacga acgcgtgcgc agccctctcc
      601 gtaatgcgtg tctcgagcga tggaaacgct tcgcgatgcg cggccagtgc gctgtcgagc
      661 gagattccat cggcgtcttt cgcttggccg tagcgctcga tcaatgccgg atcgacaaac
      721 gcgctcgatc ccatggcgcc cggctggaag cgcgtgcctt cttcgttggt ccataccacc
      781 acttcgagcg ggcggcgcgt gcggataccg gcgtcgttga gcgcggccac gcattcgaag
      841 cctgcgagga cgccatagct gccatcgagt ttgccgcctg tcggctgggt atcgacgtga
      901 ctgcccgtca tcaccggcgg aaggtcttca agaccaggcc gacggaaaaa caggttcgcg
      961 cacgcgtcgg tacggaccgt acaaccgagc gcgatggccc ggtcgatcag aaaacgccgc
     1021 gcttccagat cgatgggaga cagcgcgggg cgatccactc caccgtcttc acgcgcgccg
     1081 aatcgagcga gcgtctcgat cgattcgagc agacgtgatg catcgatgca agaggcagcc
     1141 ttgagtgggg cattcaagat catgcgaccc ccgtgacaga ggtgaggctc cggtcgaacc
     1201 acggcttcag gaactgctgc aagcgcggcg tgcgggtgtt gccgaagatt tgctcgggcg
     1261 gtcccgcttc aacgatctgt ccggcctcca tgaacaccac gtgatccgag atcttcgcgg
     1321 cgaagctcat ctcgtgcgtg accatgacca tggtcatgcc gtcttgcgcg agcgaacgga
     1381 tcacgctcaa cacttcttcc acgagttctg gatcgagggc ggaagtcggc tcgtcgagca
     1441 gcatgacttc gggttcgatc gccagcgcgc gtgcaatgcc cacgcgttgc tgctgaccgc
     1501 cgctcaggga tgcggggtag gcatcggctt tttcggcgag gccaacacgc gtcagcgcgg
     1561 ccagcgcctg tttgtgagca tcggccttgc ccgttttctt cgacaacacc agcggcgcag
     1621 ccacgttacc gagcacgctc atgtgcggcc agagattgaa ttgctggaac accatggaca
     1681 caggccgacg cacttccgcg atgctctttt cactatcgcg atcacgttcc gaacgacctg
     1741 tggagcgata accgagcaac tggcctttga tccacacttc gccttcatcg taggcttcga
     1801 gaaagttcat gcagcgcaac gcggttgtct tgccggaacc ggatggtccg atcagcgaga
     1861 cgatttcacc gcgcgtgact gagagatcga tggctttgag cacgcggtta gcgccgtacg
     1921 atttacccac ggcacgcaat tccagaatgg gcaatgaact catgaggttt tccgcgaggg
     1981 agcaatcagc gcctgcgccc aacgggcggc aagggcgata cattgcgtaa ggagccagta
     2041 gcacacgatc aacatcgcgt acggagcgat gtacgtataa gtcgacgaga cgatgtcgct
     2101 tgccgtcatc gtcaactcgg gcacggtgat gatcgacgca accgcacttt ccttgatgac
     2161 gagaatggtt tgattggcga gcaatggaat ggcgaaggca atagcctgag gcatttcgat
     2221 gctgcgaaaa gcagaccatc ggctaatgcc aaatgcgcgg gccgcttccc cgtgtccgcg
     2281 cggaatgctg gcccagccgg cgcgaaaaat ctccgcgaag tacgcggctg aatagaacgc
     2341 gagcgacacg atggtggcct gcacggcggt catggtgatg ccgattaccg gcaagccgaa
     2401 atagacgatc accagttgcg atagataggg cgtaccgcgc acgagccaca cataaaatcg
     2461 ataaggtgcc gcaagccagc gcggaaaccg cagccgcaga gcgttcagca cgaaaccgac
     2521 gagcgcgccg atcaatgccg cgagcaagct gacctcgagc gtaaccagga tagcttcggc
     2581 gaagcgcggt atgagggaaa ggaaactgtt catggttggc tcaggtccgc cgcgccatgc
     2641 gccgttcgat accccggccc gccagggaca gcagcgaagt gatcgcgaga taaaagcagg
     2701 cagcgagcgt atagacctcg agcggccggt aactgaccga agacagttgc tgcccgacgc
     2761 gcatgaggtc cgtgaccgca atgactgaga ccaccgccga cgccttcaca atatcgatca
     2821 tctccgacac cagcgcgggc agcgtcaacg cgacgacctg cggaatctcc acatgccaca
     2881 aggtctggcg gcgcgtgaga ttgaaggtct gcgccgcttc gatctgcccg cgcggaatcg
     2941 cgcgaaagcc ggttcccagg atctgcgact gatacgccgc cgtattcatc gacagaccca
     3001 cggccgctgc gatcacgccg ggaatggccc acccaagtcc cgagggcacg tagtagaaca
     3061 ccagcaattg cgcgagcacg ggcgtaccgc gaaagacgct cacgtagacg cgtgcggcga
     3121 tggccagcgt gcggctcttg cttgcggaca tcatgtagat gaagatgccc gcgaagaagc
     3181 cgcatgccac cgcgatagcc gagagccaca gtgtcgtaat ggcgccgtcc agcagttgcg
     3241 gcagatagcc gagacagcgc gcgagaagat cgggtggatt catggggttt gatgctgctt
     3301 acatcgacgg ctcgggcacg gcgtcggcgg gaacgtccat ggtcgtgccg aaccacttca
     3361 tctgc
//
LOCUS       DATGBK010001432         2201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_202313, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001432 DATGBK010000000
VERSION     DATGBK010001432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202313"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2201)
                     /locus_tag="VKJ77_19945"
     CDS             complement(<1..>2201)
                     /locus_tag="VKJ77_19945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HMC47601.1"
                     /translation="SNRHETLSQALLDDVAAFALNGGDPFASQTIIVPSAAVRRRLEL
                     DMAGRFGICANVELCYLAQWLWARIGDVLPVPEHSPFAPDRLVWRCFRLLGVMTEAAP
                     ESSSRLRAYLDAADDSMRYELARRIATVFDHYLTYRPEWLLHWQAGGSILASAGGVID
                     ANGPRLPNATAIQREDERWQASLWRVLLADLAQNADAHDPTPPAYRFLTESPKLDLDA
                     VMKAEWPERVSVFALPTMPPLHIALLRELSRWIDVRIYAIDPCREFWFDIVSEARVEQ
                     LELAGKLDFQEVGHPLLAEWGRQTQAQLHMLRELTESAASREASHFEENPAPTWLARV
                     QNAILNLSEVAELAEADEVEEALAPGIEIHVCHSLSRQLEVLHDRLLGWFDEIDGLQP
                     SDVLVAFPDLAAAGPLIDGVFGTAPAGVAGERRRIPYRITGLPPSQANPVARVLLDWL
                     ALPERSVGAPELIEWLRVDAVAARYGVDAVALETAQTWLAAAGARRGLTPSAVTAADV
                     PSARHTFSDALMRLFLGYALPDGGAPVDEWLPVGGAQGSDAELLGRLTRFIDDIDAFG
                     ERIATARTPRAWTQLLLDALTQFFDAGLPFADSIADVRSTLDALMLSMSEGAVDTEIA
                     ADVLRTALTDALDDAARGGVPWGGVTFSSLTSLRGLPYRVVCLLGMDDGMLPSLTRAD
                     EFDLMASFGKLGDRQRRDDERNPFLDLLLSARDRLMIAYTGRSIRDNAALPP"
BASE COUNT          432 a          744 c          681 g          344 t
ORIGIN      
        1 ggcggcaacg cggcgttgtc gcgaatgctg cgtcccgtgt acgcgatcat caaacggtcc
       61 cgcgccgaca acagcaagtc gaggaacgga ttgcgttcgt cgtcacggcg ttgccggtca
      121 ccaagcttgc cgaaactcgc catcaggtcg aattcgtcgg cgcgcgtaag gctcggcaac
      181 atgccgtcgt ccatgccgag caggcagacc acgcgatacg gcaacccgcg caagctcgtc
      241 agcgacgaaa acgtcacgcc gccccatggg acaccgccac gcgcagcgtc gtcgagcgcg
      301 tcagtgagtg ccgttcgcag aacgtcggcg gcgatttcgg tgtcgacagc gccttcgctc
      361 atggaaagca tcagtgcatc gagtgtcgaa cggacgtctg cgattgagtc cgcgaatggc
      421 agaccggcat cgaagaactg cgtgagcgcg tcgagcaaca attgcgtcca ggcccgcggc
      481 gtacgcgcgg tggctatacg ttcgccaaac gcgtcaatgt cgtcgataaa ccgcgtcagc
      541 cggccgagca attccgcatc cgacccttgc gcgccgccaa ccggcagcca ttcatcgacc
      601 ggcgcgccgc cgtcgggcag cgcgtagccg aggaagagcc gcatgagggc atcggagaat
      661 gtgtgacggg cagaaggcac gtcggcagca gtgacggccg acggcgtgag cccgcgccgt
      721 gcaccggcgg ccgcaagcca cgtctgcgcg gtttccagcg cgacggcatc tacgccataa
      781 cgcgccgcga ccgcgtcgac ccgcagccac tcaatcaact cgggcgcacc gacactacgt
      841 tcaggcaacg ccagccagtc gagcaacacg cgtgcgaccg ggtttgcctg cgaaggcggc
      901 agacctgtaa tccgatacgg aatccgccgg cgctcgccgg ccacgccagc gggcgcggtg
      961 ccgaacaccc catcgatcag cggccccgcc gcagcgagat caggaaacgc cacgagcacg
     1021 tccgatggct gcagcccgtc gatctcgtcg aaccagccga gcaaacggtc gtgcaacact
     1081 tcaagctgcc gcgacaagct atggcacaca tgaatttcga taccgggcgc aagcgcttcc
     1141 tccacttcgt ccgcttccgc cagttctgca acctcgctca aattgaggat cgcgttctgc
     1201 acgcgggcga gccacgtggg cgcgggattc tcctcgaaat ggctcgcttc ccgcgacgcc
     1261 gcgctctccg tcagctcacg cagcatgtgc aattgcgcct gcgtctggcg accccattcg
     1321 gcgagcagcg gatggcctac ctcctggaag tccagcttcc cagcgagttc gagctgttcc
     1381 acccgtgcct cgctcacgat gtcgaaccag aactcgcggc atgggtcaat ggcatagata
     1441 cgtacgtcga tccatcgcga caactcgcgc agcaacgcaa tatgcaacgg cggcatagtc
     1501 ggcaacgcga acacgcttac gcgctccggc cactcggcct tcattacggc gtcgagatcg
     1561 agtttcggcg attcggtcag gaaccggtac gcgggcggcg tgggatcgtg agcgtcggca
     1621 ttctgtgcga ggtcggcgag aagtacacgc catagcgagg cctgccagcg ttcgtcctcg
     1681 cgctggatgg ccgtggcgtt cgggagacgt ggaccgtttg cgtcgattac cccgccggcc
     1741 gacgcgagga ttgacccgcc ggcctgccag tgcagcagcc attccggccg atacgtcaga
     1801 tagtgatcga acaccgtagc gatacggcgc gcgagttcgt aacgcatgga gtcgtcagca
     1861 gcgtcgagat aggcgcgcag tcgcgacgag ctctccggtg cagcctccgt cattacaccg
     1921 agcagccgga agcatcgcca caccagccgg tcgggtgcaa acggcgaatg ctcgggtacg
     1981 ggcaatacgt ccccgatcct ggcccacaac cactgcgcga gataacacag ctccacattt
     2041 gcacaaatgc caaagcgtcc cgccatgtcc agttcgagcc gacggcgcac tgccgcgctc
     2101 ggcacgatga tcgtctggct cgcgaacgga tcgccgccat tcagcgcgaa cgcggcgacg
     2161 tcgtcgagca gcgcctgcga cagcgtttca tggcgattcg a
//
LOCUS       DATGBK010001433         2281 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_294722, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001433 DATGBK010000000
VERSION     DATGBK010001433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2281
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294722"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VKJ77_19950"
     CDS             complement(<1..219)
                     /locus_tag="VKJ77_19950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47602.1"
                     /translation="MSVILEAHGLTAFYGDFQALFGIDVTVERGEVIALIGSNGAGKS
                     TFLKALAGLLPAPAEQIIYKGEAVGGAAA"
     gene            complement(222..917)
                     /locus_tag="VKJ77_19955"
     CDS             complement(222..917)
                     /locus_tag="VKJ77_19955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47603.1"
                     /translation="MSKSYGALKVTDNISFAIEQGETYGILGPNGAGKTTLFNLISGD
                     ARPDAGLIEFDGADIGKLAPYRRCMAGIGRSYQVPRPFGGMTVFENLLVGATFGGGLK
                     EREAADLCIDVLERTGLKRRADQLAGTLTLLDRKRLELARALATRPKLLLLDEIAGGL
                     TERETHELVDEIRGVKEQGVTIVWIEHVVHALLAVADRLLVIHFGKYLAQGSPAAVMD
                     DPEVRRVYLGLES"
     gene            complement(957..2246)
                     /locus_tag="VKJ77_19960"
     CDS             complement(957..2246)
                     /locus_tag="VKJ77_19960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47604.1"
                     /translation="MDDHSIDGARRHFVKLAAGGTLIAASPLFARIANAASQRTLKIG
                     YVSPQTGPLAPFGEADRFVIGQMQAALKDGIAINGKQYPVTILVKDSQSNPNRAGEVA
                     NDLILKDKVDIMLVSGTPETANPVSDACEINEMPCVSTVVPWQPWFFGRKGDPKKGFR
                     FTYHFFWGLEDVIAVYTGMWQSVQTNKSVGGLFPNDGDGNAWGDGKLGFPPVLAQKGF
                     TLKDPGRFQSMTQDFTAQIAAFKQGGAQIVTGVVIPPDAKNFLVQARQQGFRPKVISI
                     GKALLFPTSIEALGDLGDGLSTEVWWSPSHPFKSSLTGQSARQLADAYEKAASKQWTQ
                     PIGFAHALFEIAVDALKRSKDVDSNEAIRDAVASTKLDTVVGHVAWGSGPVKNVAKTP
                     LVGGQWIKGQTHRFDLAIVNNQLAPNVPLSGPLKLIG"
BASE COUNT          428 a          748 c          650 g          455 t
ORIGIN      
        1 ggccgccgcg ccgccgaccg cctcgccctt gtagataatt tgctccgcgg gcgcaggcaa
       61 cagtccggcc agcgccttca ggaaggtcga cttccccgcg ccgttcgaac caatcagcgc
      121 aatcacttcg ccgcgctcga ccgtgacatc aatgccaaaa agcgcctgga aatcgccata
      181 aaaagcggtc aagccgtgag cttcaagaat gacagacatg atcaactctc caggccaaga
      241 tagacacgcc tgacttcggg gtcgtccatc acggcggccg ggctgccctg tgcaaggtac
      301 ttgccgaagt ggatgaccag caaccggtcg gcgacggcga gcaacgcgtg caccacatgc
      361 tcgatccata cgatcgtcac tccctgctcc ttgacgccgc gaatttcatc gacgagttca
      421 tgtgtctccc gctccgtcag accacccgct atttcatcaa gcagcagcag tttcggccgg
      481 gtcgccagcg cgcgggcaag ttcgagacgc ttgcggtcca gcagcgtaag cgtgccggcc
      541 aactggtccg cgcggcgctt gagaccggta cgctctagta catcaatgca caggtcggcc
      601 gcttcacgtt ctttcagccc gccgccaaag gtcgcaccaa ccagcaggtt ctcgaacacc
      661 gtcatgccgc cgaagggccg cggcacctga tacgaccgtc cgatgcccgc catgcatcga
      721 cgatacggcg ccagcttgcc aatatctgcc ccgtcgaatt cgatcagacc ggcgtccggc
      781 cgcgcgtcgc cgctgatgag gttaaagagt gtggtctttc ccgcgccgtt cggtccgaga
      841 atcccgtagg tctcgccttg ctcgatcgca aagctgatgt tgtcggtgac cttcagcgca
      901 ccgtagctct tcgacacatc tgtcaacctc agaacgcaac tcatgctcgc ctccctctag
      961 ccgatcaact tgagcgggcc agacagcggc acattcggtg cgagctggtt gttcacgatc
     1021 gcgagatcga agcgatgcgt ctgccccttg atccactgac cgccaaccag gggcgtcttc
     1081 gcgacgttct tcaccggccc gctcccccat gcgacgtgac cgacgaccgt gtcgagcttc
     1141 gtcgatgcca ccgcgtcacg aatcgcttcg ttcgagtcaa cgtccttgct acgcttgagc
     1201 gcgtcgacgg cgatctcgaa cagcgcgtgc gcgaagccga tgggttgggt ccattgtttc
     1261 gatgccgcct tctcgtacgc gtcggctagc tggcgggccg actgccccgt cagcgacgac
     1321 ttgaacgggt gcgaggggga ccaccacact tctgtggaga gaccgtcgcc aagatcgccc
     1381 agcgcttcta tcgaagtcgg aaacagcagc gccttgccga tcgaaatgac ctttggcctg
     1441 aacccttgct ggcgcgcctg caccaggaaa ttcttcgcgt cgggcggaat cacgacgccc
     1501 gtcacgatct gcgcgccgcc ttgcttgaac gctgcgattt gtgccgtgaa gtcctgcgtc
     1561 atggactgaa agcggccggg gtccttcagc gtaaagccct tttgcgcgag tacgggcgga
     1621 aagccgagct tgccgtcacc ccatgcgttg ccgtcgccgt cgtttggaaa aagtccgccc
     1681 accgacttgt tggtctgcac cgattgccac atgccggtgt acacagcgat cacgtcttca
     1741 aggccccaga agaagtgata tgtaaaacga aatcccttct tgggatcgcc cttcctgccg
     1801 aagaaccacg gttgccacgg gacgaccgtg gagacgcacg gcatctcgtt gatctcgcac
     1861 gcgtcgctca cgggattggc cgtctcaggc gtccccgaaa ccagcatgat gtcgaccttg
     1921 tccttcagga tcaggtcgtt cgccacctca ccggcgcggt tcggattcga ctggctgtcc
     1981 ttgaccagga tcgtgaccgg atattgtttg ccattgatcg cgatgccgtc tttaagcgcg
     2041 gcctgcatct gtccgatgac aaaacggtcg gcttcaccga acggtgcgag cggcccggtt
     2101 tgcggcgaca cgtagccgat cttcagcgtt cgctgactgg cagcgttcgc gatgcgcgca
     2161 aacaggggtg aagccgcgat aagcgtaccg cccgctgcga gctttacgaa atgacggcga
     2221 gcgccgtcga tggaatgatc gtccatgctt gtctccttca gtcttttatc gtgctgtgcc
     2281 g
//
LOCUS       DATGBK010001434         2657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_109582, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001434 DATGBK010000000
VERSION     DATGBK010001434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109582"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(671..1531)
                     /locus_tag="VKJ77_19965"
     CDS             complement(671..1531)
                     /locus_tag="VKJ77_19965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47605.1"
                     /translation="MVDSIHAPGPAARPIDANCLPYPPKTGVGGIPRILTALIDKLDA
                     YLEDPADCLPSLNVANGKPRQQRRDRRVACVQLLRAHIKYLDLPSLRVGIPQGDGNFM
                     SVTLRFLARQAGIGLRRAERAMRDLHSAGLVRSQSRCELDEAGQYRGLASLRQLPPAL
                     FGAFGLAKWLKHERSKAILRRYRAAAAAAKEGRREREAAQGALFLESMRHQLERGRKA
                     TPRSGHANAGHLDLTCSTDPQLDDQVRRRIGALKLQHPDWDREACYEHAYRELAPSAR
                     HTPFTTPPLA"
     gene            complement(1534..>2657)
                     /locus_tag="VKJ77_19970"
     CDS             complement(1534..>2657)
                     /locus_tag="VKJ77_19970"
                     /inference="COORDINATES: protein motif:HMM:NF037421.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LPD7 domain-containing protein"
                     /protein_id="HMC47606.1"
                     /translation="ARRLLAELSHSHGVRPEKYPVTVAKDGSARIRAGTRHLNVSDFL
                     TKELHLPWANASQILRDSYRRQVDGAVPAPVRELPRATLWREFTTERDTLRLDRQAAM
                     KSQKASESARRDEIKRTFAAARDLARNDLTLRPSARRAGVSVARMTRVAAEQSLRAQS
                     QVERDHLIAKHGPAVGPSFGDFLQAKVQGGDTRALAELRRLRPSPSESPKEGENWILP
                     AGNTPGQIERNEIVYRAPRLTFEVHASGDVTYRHDGRSVVRDQGPSVKVLKTDREAIE
                     SGLRLAQAKFGNVLKLEGPVEFQREAAKVAAEAGLYVEFADDKLNQLMQARRAELVTE
                     RANAVTARSRTEPHPVGVDPKVTRVSPVMPAPAVVSPKR"
BASE COUNT          451 a          843 c          894 g          469 t
ORIGIN      
        1 atatggtgcc caaaggggga gcccctttgg aaaccccggc ggcgaagccg ccaggtcgcc
       61 gctacgcggc gagtcagcag agcggtggat ggccacggtc gcggaatcac ccactgggtg
      121 ttcgccgtct cgctctgaac agcgcgaacc acgcacgtcg ttacaggcct gggcgcatac
      181 cgcccacttc ctgcaagccg cttttagcgt ggcacgccga tcacgctgcg cgcgcgccgt
      241 cgcccggatc gagccgcgct gggctccacg ctagtagcgt ggggagagcg gcgacccgaa
      301 gcgcagcgta ggggcgatcc ggcatgccct gcgctatgcg atcgggggcc gtccagccgc
      361 cggaggcggc ggttcaggcc ctcacttggg gcgtggaatc aatgctgcaa aggtactgat
      421 agaggcggtg attaagaacc gacacataag tcggggtgtt cccgacatta agcgttccgc
      481 gagcgcgaaa cgtggggatt tggcgtacgt acccggggcg catcgggatg caatcggcac
      541 tcgaaatcgg gttcagcaag ataggggcgg ttcgggacgg ggatttggac aaaccgacag
      601 acagataccg ttttgcgggc gtaggcgagc ctcgcgcggc gatcagggtt acagggtgaa
      661 gcgggagggg ttaagcgagt ggcggggtcg tgaagggcgt atgtcgcgct gatggagcca
      721 gctcacgata ggcgtgctcg tagcacgcct cgcggtccca gtcgggatgt tgcagcttga
      781 gcgcaccgat gcgtcgacgc acctggtcat cgagctgcgg atccgtactg caagtgaggt
      841 cgaggtggcc agcgttggcg tgaccagatc tcggcgttgc cttgcggccg cgttcaagct
      901 ggtgccgcat gctttccagg aacaaggcac cttgcgcagc ttcgcgctcg cgacggccct
      961 ctttcgcggc ggcggccgcc gcgcgatagc gccgaagaat ggccttgctg cgttcgtgct
     1021 tgagccactt cgccaggccg aacgcgccga ataacgccgg cggcaactgg cgcagcgacg
     1081 caagcccgcg gtactggcca gcttcgtcca gctcgcaacg tgactggctg cgcacaagtc
     1141 ccgccgaatg cagatctcgc atcgcccgct ccgctcggcg cagaccgatg ccggcctggc
     1201 gcgcgagaaa gcgcagcgtg acgctcatga agtttccgtc accttgcggg ataccgacgc
     1261 gcaggctcgg cagatcaagg tatttgatgt gggcgcgcag caactgcacg catgcgacac
     1321 ggcgatcgcg gcgctgctgg cgaggtttgc cattggccac gttcaggcta ggcagacagt
     1381 ctgccggatc ttccagatac gcatcgagct tatcgatcag cgccgtgaga atgcgcggaa
     1441 tgcccccgac gcccgtttta ggcggatacg gcaagcagtt cgcgtcgata ggacgcgctg
     1501 caggaccggg agcgtggatt gagtcgacca tccctagcgc ttggggctga cgacggccgg
     1561 cgcgggcatg actggcgaaa cccgcgtcac ctttggatcg accccgacag gatgcggctc
     1621 ggtgcgcgag cgtgctgtca ccgcgttcgc gcgctcggtg acgagctcgg cgcggcgcgc
     1681 ctgcatcaac tggttcagct tgtcgtcggc gaactcgaca tacaaacctg cctcggccgc
     1741 gaccttcgca gcttcgcgct gaaattccac cggcccttcg agcttgagca cgttgccgaa
     1801 tttggcttgt gccaggcgca acccggattc aattgcctcg cgatcggtct tcaggacctt
     1861 caccgacgga ccctgatcac gtacgacgct gcgcccgtca tgccggtacg tgacatcgcc
     1921 acttgcgtgg acttcgaagg tcaggcgtgg cgcacggtag acaatctcgt tgcgctcgat
     1981 ctgtcccggc gtattgccgg ccggcaggat ccagttctcc ccttctttcg gcgactcgga
     2041 cgggctgggc cgcaagcggc gcagctcggc cagcgcacgg gtgtcgccac cctggacctt
     2101 cgcctgcagg aagtcgccga acgaaggacc gaccgccggg ccgtgtttcg cgatcaggtg
     2161 gtcgcgttcg acctggctct gtgcgcgcaa tgactgttcg gcggccacgc gcgtcatgcg
     2221 agcaaccgat actcccgcgc gtcgagcgga cggccgcaag gtcaagtcgt tgcgcgccag
     2281 gtcgcgagcg gccgcgaagg ttcgtttgat ctcgtcgcgg cgtgcgctct cgctcgcctt
     2341 ctgcgacttc atggccgctt gccggtctaa cctcaacgta tcacgctcgg tcgtgaactc
     2401 gcgccacagc gttgcgcgcg gtaattcacg caccggtgca ggcacggcgc catcgacctg
     2461 acggcggtac gaatcgcgca ggatctgcga ggcgttcgcc cacggcaggt gcagttcctt
     2521 ggtcaggaag tcagagacgt tcaggtgacg ggttccggca cggatccgcg cactaccatc
     2581 cttggccacc gttaccggat atttctccgg ccgcacgcca tgcgaatgcg acagttcggc
     2641 gagcagacgc cgcgcgt
//
LOCUS       DATGBK010001435         2491 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_317725, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001435 DATGBK010000000
VERSION     DATGBK010001435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2491
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317725"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            353..1240
                     /locus_tag="VKJ77_19975"
     CDS             353..1240
                     /locus_tag="VKJ77_19975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47607.1"
                     /translation="MPQKDDVGLAVRFRNDSDVALRSIMWRAKYGKGTVDFIDDGIFT
                     HDVRIDNRVLAEQGSSHFDWGGLALDALFVAARALPGASLTTTNLVLPPYVSTSDPEN
                     CSIVRATYENGETWRNPQVAQDPSPFLTPRSPIPVPSAMLGQAQTQTPEPMQFTHCTL
                     LFAFKQQLDVTFRSVGSRAADRIVVRTAYGKGAIDFVDEGTFAPDTVFKHRLTKPLTD
                     ETRGISYWSLDDPRDCAVVSAHFTDGSTWQNPSIEAAPGPLPTRVPDVMRWRSGDWAP
                     RHNVPAPSPMPSVSPTTAS"
     gene            1397..1963
                     /locus_tag="VKJ77_19980"
     CDS             1397..1963
                     /locus_tag="VKJ77_19980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47608.1"
                     /translation="MIAVLGGPHVRAIRTNIVGRYAAVLTRGGIIEGADVTWAILAEH
                     FSFGWQPLDALNFSCNLNDRPISARDKRALMLGMPKMKEEGPCHGYSGDAGPRADVES
                     IRQMMISVFIPSVRVSGQFALGHWYGGGGGERLFQRVGGKWQSIAGGGGAMDAEDLGR
                     YGVPRMTQCFFIVDDPKCPKKAVKVTVH"
     gene            2014..>2491
                     /locus_tag="VKJ77_19985"
     CDS             2014..>2491
                     /locus_tag="VKJ77_19985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47609.1"
                     /translation="MKKTVRILGVIALVLGLQAAPLGAADVQYPAEALNMTLVGHVDL
                     ISGGEGLAMKVTSGGRRLLYFAHETAPHCFSIIDVTDAAHPALLRTVDTVSADLRCNS
                     LDVFGNVLVVAGEVKTQGLPGAGIRVYALDDPGNPKMLSYFDTSGPHSRGVHHVWLS"
BASE COUNT          494 a          691 c          750 g          556 t
ORIGIN      
        1 gggagatacg gcgggacgat tcgcacgaac ggatcgggct gaacgagatg cagcagacca
       61 gccccgacaa ataccaagac aagcagcacg cgtgcggcta tctggatcat tggacgttca
      121 tcggcacgat gcgttgcacg agtagcattt gccgcaccta gccggactag tcctcgcgcg
      181 ctaataaagt ctctgtttcc tgacgacacc actactgatg cgtagtttcg ttcggtgggt
      241 tgtgccggcg tttgcccttg tcgttgccct ggcgcctgtt gctcctttgc gtgcttcgcc
      301 tgaggcaccg aaaattcacg ttttctcgtg tcaggcgatg tccggctctt ttatgccgca
      361 aaaagatgac gttggactcg ccgttcgctt tcgcaacgat tccgacgtcg cgcttcgctc
      421 gatcatgtgg cgtgcgaagt acggaaaggg cacagtcgat tttatcgatg acggcatatt
      481 tacgcatgac gttcgcatcg ataatcgcgt gctggccgaa caaggatcgt cgcattttga
      541 ttggggcggc ctcgcactcg atgcgctgtt tgttgcagct cgtgccctgc ccggcgcgtc
      601 gctgacaacg acgaacctcg ttttgccgcc atacgtcagc acctccgatc cggaaaattg
      661 ttcgatcgtg cgcgcgacgt atgaaaatgg cgagacctgg cggaatccgc aagtcgcaca
      721 agatccatca ccgtttctca cgccgcgatc gccgatcccc gttccgagtg cgatgctcgg
      781 gcaagcgcaa acccaaacgc ccgagccgat gcagtttacg cattgtacgc tgctgttcgc
      841 tttcaagcag caactcgacg tcacgttccg aagcgtgggg tcgcgcgccg ccgatcgtat
      901 tgtcgttcgt acggcgtacg gcaagggcgc aatagacttt gtggacgagg gaacatttgc
      961 gccggacacg gtcttcaaac ataggcttac gaagccacta acggacgaga cgcgcggcat
     1021 atcgtactgg tcgctcgacg acccccggga ttgtgccgtg gtgagtgctc acttcacgga
     1081 cggctcgacg tggcagaatc cgtccatcga agctgccccc ggaccgttgc cgacccgtgt
     1141 tccggacgtc atgagatgga gatcagggga ctgggcaccg cgacacaatg tgccggcgcc
     1201 gtcaccaatg ccgagcgtat ctccaaccac ggcatcttga ggccaacgaa acgccgatcc
     1261 ccataaggga agcgcgaggt tcgtgcttta agcacgggct atggtgttaa tcggggcgct
     1321 gctattcact ctagcgaccg ggcattttgg ctacgcgctc ccacataagg attacgagcc
     1381 cacgcctcag cgggcggtga tcgccgtgct gggtggtccg catgtacgcg ccatacgcac
     1441 gaatattgtc ggtcgttatg cggccgtttt gacgcgtggc ggaatcattg aaggcgccga
     1501 cgtgacctgg gccattctcg ccgagcattt ttcgtttgga tggcagccgc tggatgcgct
     1561 gaatttcagt tgcaacctta acgatcgtcc gatttcggca cgcgacaaaa gagcgcttat
     1621 gctcggcatg cccaagatga aagaagaagg cccgtgtcat ggctattccg gcgatgccgg
     1681 gccgcgtgca gacgttgagt cgattcgtca gatgatgatt tccgtattta ttccgtcagt
     1741 acgtgtctcc ggtcaattcg cacttggtca ctggtatggc ggcggtggtg gcgaaagact
     1801 ctttcaacga gttggtggta agtggcagag tattgccggt ggcggcggcg cgatggatgc
     1861 cgaggatcta ggacgatacg gcgttccgcg aatgacacag tgctttttta tagttgatga
     1921 tccaaagtgc cccaaaaaag ccgtgaaggt aacggtccat tgatctatcg cccgcatgga
     1981 atcacccaaa cacatttcgc ataggagcgt tatatgaaga agacggtgcg catactcggg
     2041 gtcatcgctt tggtacttgg attgcaggcc gcgccactag gtgctgcgga tgtgcagtat
     2101 ccggctgagg cgctgaatat gacgctggtg gggcatgtcg accttattag tggcggcgag
     2161 ggcctcgcga tgaaggtcac gagcggcgga cggcgtctct tgtactttgc gcatgagact
     2221 gcgccgcatt gcttcagcat catcgacgtg accgatgccg cgcatcccgc gctgttgcgt
     2281 accgttgaca cggtaagtgc cgacttgcgc tgcaattcgc tcgacgtgtt cgggaacgtg
     2341 ctcgtcgtcg ccggtgaagt gaaaacacaa ggcttgccgg gtgcgggaat tcgcgtgtac
     2401 gcgcttgacg atcccggcaa tccgaagatg ctcagctatt ttgatacgtc gggaccgcat
     2461 tcgcgcggcg tacatcacgt gtggctctcg a
//
LOCUS       DATGBK010001436         2014 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_340877, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001436 DATGBK010000000
VERSION     DATGBK010001436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340877"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..690)
                     /gene="uvrC"
                     /locus_tag="VKJ77_19990"
     CDS             complement(<1..690)
                     /gene="uvrC"
                     /locus_tag="VKJ77_19990"
                     /inference="COORDINATES: protein motif:HMM:TIGR00194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HMC47610.1"
                     /translation="MNDNRLERTLAQLPDAPGVYMMIGEDGRILYIGKAVSLRNRVRS
                     YFQDSAALAPRTRAMVERVADVRTIVVSNEIESLILEANLIKRHQPPFNVRLRDDKRF
                     PYLKVTNERFPRVVFTRTIKDDGARYFGPYTNAHGLRELIDLIRIVFPLRTCREPIDG
                     KRRRPCLQYHIKRCLAPCVGYQSEEDYDSLVDEVVLFLEGRQEALLARLQADMAEAAE
                     HFNFEAAAHLRD"
     gene            730..>2014
                     /gene="treS"
                     /locus_tag="VKJ77_19995"
     CDS             730..>2014
                     /gene="treS"
                     /locus_tag="VKJ77_19995"
                     /EC_number="5.4.99.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013595528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047471 - maltose
                     alpha-D-glucosyltransferase activity [Evidence IEA];
                     GO_process: GO:0005991 - trehalose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maltose alpha-D-glucosyltransferase"
                     /protein_id="HMC47611.1"
                     /translation="MTDIQPHAEPVKPRSLLWYKDAVIYQLHIKAFADANADGIGDFP
                     GLIAKLPYLKELGASAVWLLPFYPSPLRDDGYDIADYKEIHSSYGTMADFHAFVKAAH
                     ELELRVITELVINHTSDSHPWFERARNAPSGSEFRDWYVWSDTPEKYGDTRIIFTDTE
                     KSNWTWDPVAKQYYWHRFFSHQPDLNFDNPHVFDAIVDVMRFWFDAGVDGVRLDAVPY
                     LCEREGTNNENLPETHAVLKRLRAVLDAEYPDRFLLAEANQWPEDVAQYFGNGDECHM
                     AFHFPLMPRMFMSIAEEDRYPIYDIMRQTPAIPDNCQWAMFLRNHDELTLEMVTDRER
                     AFMYRVYATEARARVNVGIRRRLAPLMENDRRRIELMTSLLLSMPGTPILYYGDEIGM
                     GDNIYLGDRDGVRTPMQWSGDRNGGFSTADAQRLFL"
BASE COUNT          419 a          598 c          582 g          415 t
ORIGIN      
        1 atcgcgcaaa tgcgcggccg cctcgaagtt aaagtgctcg gcagcttcgg ccatgtcggc
       61 ttgcagccgg gcgagcaacg cttcttggcg gccctcgaga aagagcacga cttcgtcgac
      121 gagcgaatcg tagtcttctt cggattgata gccgacgcac ggtgccaaac agcgcttaat
      181 atgatactgc aaacacggcc ggcgacgctt gccgtcgatc ggctcgcgac acgtgcgcag
      241 gggaaacacg atgcgaatga gatcgatcag ttcgcgtaaa ccgtgcgcgt tggtgtacgg
      301 cccaaaatag cgcgcgccgt cgtctttaat cgttcgcgtg aacacgacgc gcggaaagcg
      361 ttcgttcgtc actttcaggt atgggaaacg tttatcgtcg cgcagccgga cgttgaacgg
      421 cggttgatgc cgcttgatga ggttcgcctc gaggatgaga gactcgatct cgttcgagac
      481 gacgatcgtg cgaacgtcgg cgacgcgctc gaccatcgca cgcgtccgcg gcgcgagtgc
      541 cgccgaatcc tgaaaatacg agcgcacccg attgcgtaac gacacggcct tcccgatata
      601 aagaatccgg ccgtcctcgc ctatcatcat gtagacgccg ggggcatcgg ggagctgcgc
      661 gagcgtgcgt tcgagccggt tgtcgttcac tgtcgcataa cttcgctatt tcgggtatag
      721 aaccccgaag tgaccgatat ccagccgcac gccgagcccg tcaagccccg atcgctcctt
      781 tggtataagg atgcggtcat ttaccagttg cacatcaagg cgtttgccga tgcgaacgcc
      841 gatggaatcg gcgattttcc ggggctgatt gccaagttgc cctacctcaa agagctaggc
      901 gcatcggcgg tgtggctgct gccgttctat ccgtcgccac tgcgcgacga cggctacgac
      961 attgccgact ataaggaaat tcattcctcg tacggcacga tggccgattt tcacgccttc
     1021 gtgaaagccg cccacgaact cgaactgcgt gtgatcaccg agctcgtgat caaccacacg
     1081 tccgattcgc acccctggtt cgagcgcgca cgcaatgcgc cgtcgggttc ggagtttcga
     1141 gattggtacg tctggagcga tacgcccgaa aaatacggcg atacgcgcat catcttcacc
     1201 gatacggaaa agtcgaattg gacctgggac cccgttgcca aacaatatta ttggcatcgc
     1261 ttttttagcc atcagcccga cctgaacttc gataacccgc atgtgttcga tgcaatcgtc
     1321 gatgtgatgc gcttctggtt cgacgccggt gtcgatggcg tccgactcga tgcggtgccg
     1381 tatctatgcg aacgcgaagg aacgaacaac gaaaatctgc ccgagacgca cgcggttctc
     1441 aagcgcttgc gcgccgtgct cgatgcggaa taccccgacc ggtttttgct tgccgaggcg
     1501 aaccagtggc ccgaagatgt tgcgcaatat tttggcaacg gcgacgaatg ccatatggcg
     1561 tttcacttcc cgctcatgcc gcgcatgttc atgtcgattg ccgaagagga ccggtatccg
     1621 atttacgaca tcatgcgaca aacgccggcg attcccgaca actgtcagtg ggcgatgttc
     1681 ttgcgcaacc acgatgagct gacgctcgaa atggtgaccg accgcgaacg cgcgttcatg
     1741 tatcgcgtat acgcgacgga agcgcgcgca cgcgttaacg tcggcattcg ccggcgcctt
     1801 gcgccgttga tggaaaacga tcgtcgccgt atcgagctca tgacatcgct gctgctttca
     1861 atgcccggca cgccgatctt gtactacggc gacgaaatcg gcatgggtga taacatctat
     1921 ctcggcgacc gcgatggcgt acgaacgccg atgcagtggt cgggcgaccg caacggcggc
     1981 ttctcaaccg cggacgcaca gcgcctcttc ctcc
//
LOCUS       DATGBK010001437         5672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_40558, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001437 DATGBK010000000
VERSION     DATGBK010001437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5672
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40558"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..1439
                     /locus_tag="VKJ77_20000"
     CDS             150..1439
                     /locus_tag="VKJ77_20000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HMC47612.1"
                     /translation="MLADEAIAGDAEIAHLRSALAGAVAQSSHEIVALARALVAVPSA
                     YPPGDTHAVADAIEAMFEGFDVSVERYGTLPHVMNLVVRVRGAAPGRRLVFNGHLDTF
                     PLVSAKQWSVDFNGEERDGKLFGLGVSDMKGGLAAIIFALRHLARLRDSFAGEVVATF
                     AGDEESMGTEGSGYLLDHVPHAAGDAMISADTGSPHVLRFGEKGMVWLRLDATGKSAH
                     AAHVHKGDSAIEKLLDAIQELKSVRDYPVAAPPGVLAAIARSAAVSEAISGVGESDVL
                     RNPTITFGTISGGRLSNLIADHATATADIRLPVGVSVAQMKARISAIVARHPGVSLDI
                     VREYEPSWTDPDHEVIRTLKRHCAAKLGTEPVVNMRVGASDARLYRQHGVPTVVCGLT
                     SYNMGAADEYVHVDELRALGEIFALTAFDYLNAPAGA"
     gene            1526..2836
                     /locus_tag="VKJ77_20005"
     CDS             1526..2836
                     /locus_tag="VKJ77_20005"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47613.1"
                     /translation="MSTDNALTPEQRSKFRRILASALVGNMLEFYDLFVYGFLAVVIA
                     KAFFPTGDAYTSMLAAAATFGVSYFIRPLGAMVLGAYSDKRGRKAGMMLTIWLMGAGT
                     LVIACAPTYAMFGVAGTLILVFGKVLQGFSAGGEFGSTVSFVTEHAPARMKGYFASYQ
                     VVGIGLATGLASIVGLGTNKLMTPDTLLSWGWRIPFLIGLAIVPFGYWIRRRVDETPE
                     FKASNHERNPIRNTFATAKMRITAAIGLYSLAASTNYLLGVFIPLYAQKVLGMSAADS
                     MWGAIGYSVAQIVLPPVFGALSDRVGRLPLIATGTSLTAILTIPAFHLMVASPTVGTY
                     VFCVTGLTACVMVFQGAMPAFVAELFPHDTRTTSIAIVHNLTFAVFGGLSLMICTWIA
                     NATGSKFIPAYYVMVTTVLALLCILYFRKRAVPVVASASVLTNA"
     gene            2901..3788
                     /locus_tag="VKJ77_20010"
     CDS             2901..3788
                     /locus_tag="VKJ77_20010"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47614.1"
                     /translation="MRLRHIEVVNAIRVTGTLKAAAALLSLTQPAITQILQSAERQLG
                     YPLFDRVRGKLIPTREAQLLFPEILRLDEQLQAVQRLAQNLRGGTGDSSIRVLAAPAL
                     AQTVVADAALAFQAKHPGVKLSIRADYSATAVASIALMEADVGILYHSVSHPAIKEIE
                     LAVSRLVCVGHPSMLPDAPSIELNALEGREIVGPDPADPLGRLLAERLEELSVTVDVT
                     ITAQSYHSLVALAARSKLITIVDEVAALSARAQGLRVVPLAPVIAIPIVASVAINGER
                     SALVEQFVETCRETLRSLK"
     gene            complement(3902..5242)
                     /locus_tag="VKJ77_20015"
     CDS             complement(3902..5242)
                     /locus_tag="VKJ77_20015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HMC47615.1"
                     /translation="MQDSSVAAQSHLKRTLGLPSVLLFGLAYMAPLIVYGTYGVLAKA
                     SDDTAALAYLLALVAIAFTALSYGKLARLYPVAGSAYTYTRKTFNAHLGFLVGWATLL
                     DYFFLPMVIWLIGAAYLNAAFPTVPTWIWIVAFIVLTSALNIVGIELAARFNIVLMVV
                     QLAIVGLFVVLCWHYASAAAGPGGIALAEPFFKGHVPFASTMAGAAIAAYSYLGFDAV
                     STLTEETIDPKKNMPRAILWIALIGGAIFVLAAYTMQLAHPGVEFKDTDSAAFEVAKM
                     IGGDVFVTVFLAGLILAQFASGISAQASVGRLLYAMGRDEILPKRVFGFIHPKFKTPA
                     INIAIAGIVGLIALKLDVATSTSFINFGAFLAFTAVNLCVVRIYLSGDHGDKKIGVIG
                     GLVFPLIGAIADIWLLASLEKTALVLGAIWFVIGLVYLCWITRLFRQAPPEVAV"
     gene            complement(5338..>5672)
                     /locus_tag="VKJ77_20020"
     CDS             complement(5338..>5672)
                     /locus_tag="VKJ77_20020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HMC47616.1"
                     /translation="PFGPVHRRAITARAMENQMFALMVNRCGSGDDNLTFPGESALVD
                     PFGEIVAAAGAQETLLGVDIDFKRLEASREHYRYLNDARVPLGLTPIDNANGSRALVI
                     EERRRLIN"
BASE COUNT         1119 a         1705 c         1722 g         1126 t
ORIGIN      
        1 cgggccacag gccacaccgc ttaagtttta cttataccca acccattttg gttgattgga
       61 cctggctaat acggctaccg accatctagt caatgctggt tgtttcacat caggtgaagc
      121 gcgcgcattc aactagttgg aggcaagaca tgctagccga tgaggcaatt gcgggcgatg
      181 ctgaaatcgc tcacctgcgc agtgcccttg caggcgcagt cgcacaatcc agtcacgaga
      241 tcgttgcgct cgcacgcgcg ctggtggctg ttcccagcgc ctatccgccg ggcgacaccc
      301 atgccgtggc ggacgcgatc gaggcgatgt tcgaaggttt cgacgtcagc gtcgaacgct
      361 acggcacgct cccgcatgta atgaatctcg tggtccgcgt ccgcggcgcc gctccgggtc
      421 ggcgactcgt ttttaacgga cacctcgaca cgttcccctt agtcagtgca aagcaatggt
      481 ctgttgattt caacggcgag gagcgagacg gtaaattatt cgggctgggg gtatccgaca
      541 tgaaaggcgg tctcgccgcc atcatcttcg cattgcgcca tctcgccaga cttcgcgatt
      601 cgttcgcagg cgaggtggtg gcaacgtttg ccggcgacga agaaagcatg ggcacagagg
      661 gcagcgggta tctgctggac catgttccgc acgcagccgg cgacgcgatg atcagcgccg
      721 acaccggctc gccccatgtg ctgcgattcg gcgaaaaggg aatggtctgg ctgcgcctcg
      781 atgcaaccgg caagtcggcc cacgctgcac acgtccacaa gggcgacagc gctatcgaaa
      841 aattgctgga tgccattcag gagctcaaga gcgtacgaga ttatccggtt gccgctcccc
      901 cgggggtgct tgctgctatc gcgcgctcag ccgccgtgtc agaagcaatc tcgggcgttg
      961 gcgaaagcga tgtgcttcgt aatccgacca tcacattcgg cacgatcagc ggcggccggt
     1021 tatcgaatct gattgcggat cacgcgactg caacggccga tatccggctt ccggtcggtg
     1081 tatcggtggc gcaaatgaag gccaggataa gcgcgatcgt cgctcgccat cccggtgtct
     1141 cgctggacat tgttcgcgaa tacgaaccga gctggaccga tcccgatcac gaggtcatcc
     1201 ggacactcaa acgccattgc gccgcgaagc tcggcaccga gccggtcgtc aacatgcgcg
     1261 tgggtgcgtc cgatgcacgg ctgtatcgcc agcacggtgt gccgacggtc gtatgcggcc
     1321 tgacctctta caacatgggt gcggcggatg aatacgtgca cgtcgacgaa ctgcgggcgc
     1381 tgggggaaat cttcgcgctt accgcattcg attacctgaa tgcgccagcc ggtgcttaaa
     1441 cgccgacttc ccttaagaaa tcgtcagggt gcttgctgtc acgcggtgtt tgctgacgcc
     1501 tctcgcatcg gaaaaggaaa actccatgtc caccgataac gctctaaccc ccgagcagcg
     1561 cagcaagttc cggcgcatcc tggcgtcggc gctggtcggc aatatgctcg agttctacga
     1621 cctgtttgtg tatggttttt tagcggtcgt cattgccaag gccttctttc cgaccggcga
     1681 cgcctatacg tcgatgctgg ccgccgcagc gaccttcggc gtcagctatt tcatccggcc
     1741 tctgggggcg atggtcctgg gtgcctatag tgacaagcgc ggccgcaagg cgggcatgat
     1801 gctcacgatc tggctcatgg gcgcaggtac gctggtgatc gcgtgcgcgc cgacctacgc
     1861 catgttcggg gttgccggca cgttaatcct ggtgtttggc aaggtcttgc aggggttctc
     1921 ggcaggcggt gagttcgggt ccacggtatc cttcgtgacc gaacacgcgc ccgcgcgcat
     1981 gaagggctat ttcgcgagct accaggtggt tgggattggt cttgcgactg gtctggcaag
     2041 catcgtggga ctcggcacca acaagctgat gacgcccgat accttgttgt catggggttg
     2101 gcgcataccg ttcctgatcg gtctggcgat cgtaccgttc ggttactgga ttcgccgccg
     2161 tgtcgacgaa acccctgaat tcaaggcctc caaccacgaa cgcaatccga ttcggaacac
     2221 cttcgcaacg gcgaagatgc gtatcacggc ggcgatcggc ttgtactcgc tcgctgcatc
     2281 gacgaattat ctgctcggtg tgttcatccc cctctatgcg cagaaagtgc tgggcatgag
     2341 tgcggcggat tcgatgtggg gcgccattgg atattcggtc gcgcagattg tcttgccgcc
     2401 ggtcttcggc gcgctctcgg acagagtggg ccgtctcccg ctgatcgcga caggcacctc
     2461 cctgacggca atcctgacta tccctgcatt ccatctgatg gtcgcgtcgc cgacggtggg
     2521 aacgtatgtg ttctgcgtta ccggactgac cgcatgcgtg atggtgtttc agggcgcgat
     2581 gccggcgttc gtggccgaac tctttccgca tgacacgcgt acgaccagca tcgcgatcgt
     2641 tcacaacctg acctttgcgg tgttcggcgg cttgtcgctg atgatctgca cgtggatcgc
     2701 caacgcgacc ggcagcaagt tcatccccgc ttattacgtg atggtcacga cggtgctcgc
     2761 gctgttgtgt atcctgtact ttcgcaagcg ggcagtgccc gttgtggcga gcgcgagcgt
     2821 cttgacgaac gcatgagcag accggctggc cgctcgcctg ggccgactgc gaagttgaat
     2881 ccaacaggac ttcatattcg atgcggctca ggcatataga ggtagtgaac gctatccgcg
     2941 tgacaggaac gcttaaagcg gctgccgcgc tgctgtccct gacgcagccg gcgatcacgc
     3001 aaatcctgca aagcgccgag cgccagttgg gttacccgct cttcgaccgg gttcgcggca
     3061 agctgattcc gacccgggag gcgcagttgc tgttccccga gatacttcgg ctcgacgaac
     3121 agcttcaggc cgttcagcgg ctcgcccaga atctgcgcgg cggcacgggc gattcgtcca
     3181 tacgcgtgct cgccgcgccc gctctcgcac agaccgtggt ggccgatgca gcgctggcgt
     3241 ttcaagcgaa gcatccaggc gtgaagctgt cgattcgcgc cgattactcg gcgaccgccg
     3301 ttgcgagcat tgcgctcatg gaggcggacg tcggcattct gtatcacagc gtgtcccacc
     3361 ctgccatcaa ggagatcgaa ctggcggtca gccggcttgt ttgcgtggga catccttcca
     3421 tgttgccgga cgcgccgtcc attgaactca atgcgctgga gggccgcgag attgttgggc
     3481 cggatcccgc ggacccgctg ggaaggctgc tcgccgagcg tctggaagag ctgtcagtga
     3541 ccgtcgatgt caccatcacc gcgcagtcgt atcactcgct agttgcactg gcggcgcgtt
     3601 cgaagctgat caccatagtc gatgaagtcg cggcgctttc ggctcgcgcg caagggcttc
     3661 gggtcgtgcc gctggcgccg gttatcgcaa ttccgattgt agccagcgtc gcgatcaatg
     3721 gcgagagatc ggctctcgtc gaacaatttg tcgagacgtg ccgggagacc ctgcgttcgc
     3781 tgaagtgact ttctcgcagc gagacgtgcc ttgcttcaaa gcacgttcga tggaaaccgg
     3841 acgctgacct agcccgcaga cgcggtcgcc aaccatcatt cgcgaccgcg tcgactcccc
     3901 cttaaaccgc cacttccggc ggggcttgcc ggaacaagcg cgtgatccag cacaggtaca
     3961 cgagcccgat tacgaaccag attgcgccca gcacaagcgc tgtcttctca aggctcgcca
     4021 gcaaccagat atccgcgatc gcgccgatca gcggaaacac caacccgccg atcacgccaa
     4081 tcttcttgtc gccatgatcc cccgacaaat aaatcctgac cacgcaaaga ttgacggcgg
     4141 tgaacgcgag gaatgcgccg aagttgatga acgatgttga cgtcgccacg tccagcttca
     4201 gcgcgatcaa acccacaatg cccgcaatcg cgatgttgat cgctggcgtc ttgaacttcg
     4261 gatggataaa accaaacacg cgcttgggca ggatttcatc gcggcccatg gcgtaaagca
     4321 gacggcccac gctggcctgt gccgatatac ccgatgcaaa ctgcgcgaga atcaggccgg
     4381 ctaaaaagac ggtcacgaag acatccccgc caatcatctt ggccacttcg aacgcggccg
     4441 aatcggtgtc cttgaattcc acgcccgggt gcgcaagctg catcgtataa gcggccagaa
     4501 cgaaaatcgc gccaccgatc aacgcgatcc acaagatggc gcgcggcatg ttcttcttcg
     4561 gatcgattgt ctcttcggtg agcgtggata ccgcgtcgaa tccgaggtac gaatacgcgg
     4621 caatggcggc gccggccatg gtcgaggcga acggcacgtg tcctttgaag aacggttccg
     4681 ccaacgcgat cccgccggga cctgccgccg ccgatgcata gtgccagcac aacacgacaa
     4741 acaaaccgac aatggccagt tgcacaacca tcaacacaat gttgaagcgc gcggccagtt
     4801 caatccccac aatattcagc gcgctcgtca agacgatgaa cgcgacgatc cagatccagg
     4861 tgggcacggt cgggaatgcg gcgttcagat aagccgcgcc gatcaaccag atcaccatgg
     4921 gcaggaagaa atagtcgagc agcgttgccc agccgaccag gaagcccaga tgcgcattga
     4981 aggtcttgcg tgtgtaggta taagcggagc cggcgacagg gtagagccgt gcaagcttgc
     5041 cgtagctcag cgccgtgaag gcgatagcaa cgagggccaa aagataagcg agggcagcgg
     5101 tgtcatcgct tgctttggcg agcacgccat aggtgccata tacgatcaac ggcgccatat
     5161 aggccaggcc gaacagcaat acggacggca agccgagtgt acgtttcaga tgcgactgcg
     5221 cggctacgga cgagtcttgc atgatatctc cgggactttc gacaggcgtg ggcgggcgcg
     5281 tccgaagcac gggctccgga cgattcatgt gctacggaac tgctgaagct tcagtcttca
     5341 gttgataagg cgacggcgct cttcgatcac aagcgcacgt gatccgttcg cgttgtcgat
     5401 cggcgtgagg ccgaggggca cgcgtgcgtc gttcaaataa cgatagtgct cacggctggc
     5461 ctccagccgc ttgaagtcga tatccacgcc tagcagcgtt tcttgcgcac ccgccgcagc
     5521 gacgatctcg ccgaagggat cgacgagtgc ggattcaccg gggaaggtga ggttgtcgtc
     5581 gcctgagcca cagcggttca ccatgagcgc gaacatctgg ttttccatcg cgcgtgctgt
     5641 gatggctcgc cgatgcaccg ggccgaacgg at
//
LOCUS       DATGBK010001438         1734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_294757, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001438 DATGBK010000000
VERSION     DATGBK010001438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294757"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1668)
                     /locus_tag="VKJ77_20025"
     CDS             complement(<1..1668)
                     /locus_tag="VKJ77_20025"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="HMC47617.1"
                     /translation="MTPCCAGLSRQPAFDAPHIGDPLDVAFDAGVNLAFAIAAPTVPP
                     RLTQHSQRMAQRIYRVAERVYCAVGYAIANIIFVVGDDGIVVIDTTEAVSAAKRIYED
                     FCAIDPRHARLPVKAVVYTHNHTDHTGGVRAFADEAQLAAGSVEIIAHSSLMETVINN
                     ANLVAPILAARSAYSFGTLLPAGPTGKVNAGIGPVLIAEPARFLAPTRVFDDTLDIVL
                     AGVRFEFRYAPSEADDEIVMWLPDLGVLLSAEVIQGECLANVHTLRGTRYRDPVRWYR
                     TIDMMRDFRAVHMVPAHGRPVSGEAAVADVLSVYRDAIQFIHDQAIRHMNRGLTQDEL
                     ADAIPSLPPHLAQHAWLGEYYGTVKHSVRQVYTGQLGWFDGDPASLDPLSRGERARRT
                     VDMMNGTEAVRAAARVALGDGDWRWAAELATLLVRLDITDTDARTIKAEALRELGYRT
                     ENTNWRNWYLSAARELEHAYDELPFAGGGGLASMDVMRAQPLGNVLQRLCVSVDPVLS
                     ADVHMILALWLTDRDATFALELRKGVLQVHERPWPNADLQLALDTTAL"
BASE COUNT          337 a          560 c          533 g          304 t
ORIGIN      
        1 caaagcggtg gtatcgagtg caagctggag gtcagcattt ggccacgggc gctcgtgaac
       61 ctgaagcacc cccttgcgca attccagcgc gaacgtggcg tcccgatccg tcagccatag
      121 cgcgaggatc atgtgtacat cggcagacag cacaggatcg acagacacgc agaggcgctg
      181 caatacgttg ccaagcggtt gcgcgcgcat cacgtccatt gacgccagtc cgccgccgcc
      241 cgcgaacggc agttcgtcat aagcatgttc cagctcgcgc gccgcgctca agtaccagtt
      301 gcgccaattt gtgttctcgg tgcgataccc caactcgcgc aacgcctccg ccttgatcgt
      361 gcgcgcgtcg gtatccgtta tatcgagtcg cacgagcaac gtggcaagct cggccgccca
      421 gcgccagtca ccgtccccga gcgccacccg ggcggccgcg cgcacggcct cggtgccgtt
      481 catcatgtcg acggtgcgac gcgcccgctc tccacgtgat aacggatcga gagaagcggg
      541 gtcgccgtcg aaccacccca gttgtccggt gtacacctgc cgcacggaat gcttgacggt
      601 gccgtagtac tcgcctagcc acgcatgctg ggccagatga ggcggcagcg acggaatggc
      661 gtcggcgagt tcgtcctgcg tgaggccgcg attcatatgg cggatcgcct gatcgtggat
      721 gaactggatc gcgtcgcgat acacggacaa tacatccgcc acggccgctt cgcccgacac
      781 cggacggcca tgcgccggca ccatatgcac cgcacggaag tcgcgcatca tgtcgatcgt
      841 gcgataccag cgcaccggat cgcgatagcg cgtgccgcgc agcgtatgca cgttcgcaag
      901 acactcgccc tggatcacct ccgccgacag caggacgcca aggtcgggca gccacatcac
      961 gatctcgtca tcggcttccg atggcgcata gcggaactcg aaacgcaccc cggcgagcac
     1021 gatatccagg gtatcgtcga acacacgcgt gggcgcgaga aatctcgccg gttcggcaat
     1081 caacaccggt ccgatccctg cattgacctt gccggtcggg cccgcgggca gcagtgtgcc
     1141 gaagctgtac gccgagcgcg cggcaaggat aggcgcgacc aggttcgcgt tgttgatgac
     1201 cgtttccatc agcgagctat gcgcgatgat ctcgacactt cccgccgcga gttgcgcctc
     1261 gtcggcaaac gcacgcacac cgcccgtgtg gtccgtatgg ttgtgcgtgt agaccaccgc
     1321 cttcacgggc aatcgcgcgt ggcgcggatc gattgcacag aagtcctcat agattcgttt
     1381 agccgccgat acggcttcgg ttgtatcgat caccacaata ccgtcgtcgc caaccacgaa
     1441 gatgatgttc gcaatcgcat agccgacagc gcaatacacg cgctccgcca cgcggtagat
     1501 gcgctgagcc atgcgctgcg aatgttgcgt caggcgcggc gggacggtcg gtgcggcgat
     1561 cgcgaaggcg aggttcacgc cggcgtcgaa cgcgacatcg agcggatcgc caatgtgtgg
     1621 cgcgtcaaaa gctggttggc gcgataggcc ggcgcaacat ggggtcatgg atgtctcctt
     1681 gcggtagtct aaaatacaat cggaaccgga attcgcgttc cgttttttct gaaa
//
LOCUS       DATGBK010001439         1718 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_86145, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001439 DATGBK010000000
VERSION     DATGBK010001439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86145"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..496
                     /locus_tag="VKJ77_20030"
     CDS             <1..496
                     /locus_tag="VKJ77_20030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione binding-like protein"
                     /protein_id="HMC47618.1"
                     /translation="NKPEDLAVMNPYNQVPVLVERDLILYESNIINEYIDERFPHPQL
                     MPPDPVMRARARLLLFNFEVELFSRIEILEHGNAKQQEKARSHVADRLTELAPIFVKQ
                     KYMLGDEFSMLDVAIAPLLWRLDHYGISLGKPAAPLMKYAERLFSRPAFIEALTPSEK
                     VMRK"
     gene            593..1012
                     /locus_tag="VKJ77_20035"
     CDS             593..1012
                     /locus_tag="VKJ77_20035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017453791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HMC47619.1"
                     /translation="MHDPSTKPYLMRAIYDWCVDSGYTPYLSVTVDSVTRVPMEYVKD
                     GQIVLNIGPVAVERFKIGNDLIEFSARFNGAGREISIPVGAVSAIYARENGQGLSFEV
                     PAADAPASVHLADADGSDETHPEPPRPSGKPSLRRVK"
     gene            1173..1245
                     /locus_tag="VKJ77_20040"
     tRNA            1173..1245
                     /locus_tag="VKJ77_20040"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1206..1208,aa:Thr,seq:tgt)
     gene            1399..>1718
                     /locus_tag="VKJ77_20045"
     CDS             1399..>1718
                     /locus_tag="VKJ77_20045"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HMC47620.1"
                     /translation="MEVGVIDNLIEWAKTEEALRASQSELRRRATQHLTIQETERRRI
                     AADLHDGLGQSLSLLKLGIQEALRQMGAGVPRKAVESVKKLLPKVASALDELRRVSMD
                     LRPST"
BASE COUNT          351 a          495 c          534 g          338 t
ORIGIN      
        1 caacaagccc gaagacctcg cggtgatgaa cccgtacaac caggtgccgg tgctggtcga
       61 gcgcgacctg attctgtatg agtcgaacat catcaacgaa tacatcgatg agcgcttccc
      121 gcacccgcag ctgatgccgc ctgacccggt gatgcgcgcg cgcgctcggt tgttgctgtt
      181 caatttcgag gtggagctgt tcagccgcat cgagatcctc gagcacggca acgccaagca
      241 gcaggaaaag gcgcgctcgc acgtggccga ccggctgacc gagcttgcgc cgattttcgt
      301 caaacagaag tatatgctgg gcgatgaatt ctccatgctc gacgtggcga tcgcgcccct
      361 cttgtggcgc ctggaccact acggcatctc tctgggcaag ccggccgcgc cgctgatgaa
      421 atacgccgag cgtctattct cgcgcccggc cttcatcgag gcgctgacgc cttctgaaaa
      481 agtaatgcgt aagtgaattg cgaggagtca tcccgaggaa gggtggcgaa gtggaaactg
      541 ctctagcggc aataatggat tcctcgctac ccttggaacc acgaattcac ctatgcacga
      601 tccgtcgacc aagccctacc tgatgcgcgc catttacgac tggtgcgtgg acagcggcta
      661 cacgccctat ctctcggtaa cggtggattc ggtcacgcgc gtgccgatgg agtacgtcaa
      721 ggacggccag atcgtgctca acatcggccc ggtcgctgtg gagcgcttca agatcggcaa
      781 tgatctgatc gagttttctg cccgcttcaa cggtgcgggg cgcgaaatct cgattccggt
      841 cggcgcggtg tccgcaatct atgcgcgcga gaatggccag ggcctgtcgt tcgaggtccc
      901 ggcggcggat gcgccggcgt cggtccacct cgccgacgcc gacgggagcg atgaaacgca
      961 ccccgaacca ccgcgcccat caggcaaacc ttcactgcgg cgggtaaagt gacgctgaag
     1021 ctgttgcggg atgatcgcaa cagttttccg atctggggta caaaaaaagg aggacgtgcg
     1081 ctctcgttac aacaagttcc tatcgcgctc cgccgcgaga cgcgcacggg ggccagatgc
     1141 ctgtgatctc ccgcgtataa tacgttgcgt atgccgggtt agctcagttg gtagagcagc
     1201 gcatttgtaa tgcgacggtc gagggttcaa atcctttacc cggcacccat cttgctgagc
     1261 catcgtttgt gcgagccacg ctatgtaacg ggcatttgcg ctgaagcccc cctttgggcg
     1321 ggcgtctaac cgggctgcaa ttgatctggg tcaagttttc gcggtgcgta agaaatacaa
     1381 taggaaaggc atttgatttt ggaggttggt gtgattgata acttgattga gtgggcaaag
     1441 acggaagaag ccttgcgcgc ctcccaaagt gagttgcggc ggcgcgcgac acagcacctt
     1501 acgatccagg agacggagcg gcggcgcatt gccgccgacc tgcacgacgg tctggggcaa
     1561 tcgctgagcc tgctcaagct cgggattcag gaagcgctgc gccagatggg tgccggcgtg
     1621 ccgcggaaag cggtcgaatc ggtgaaaaaa ctgttgccca aagtcgcgag tgcgctggac
     1681 gaactgcgcc gggtcagcat ggatctgcgc ccgtcgac
//
LOCUS       DATGBK010001440         2933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_272096, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001440 DATGBK010000000
VERSION     DATGBK010001440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272096"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VKJ77_20050"
     CDS             <1..227
                     /locus_tag="VKJ77_20050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013689736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4337 family protein"
                     /protein_id="HMC47621.1"
                     /translation="AKAHDMEKQVEEANLQSERKEHPQHMFGQALALIGVAISLAAIT
                     SLTGSRKLFVVAGLAGIAGIGVSILGFLNI"
     gene            complement(253..885)
                     /locus_tag="VKJ77_20055"
     CDS             complement(253..885)
                     /locus_tag="VKJ77_20055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014426783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HMC47622.1"
                     /translation="MKNYRCPPSGVLSLVFAIAALGSVPACAASDQVETIVMVRHGEK
                     PAAGLGQLSCEGLNRALALPRVIESKYGKPDFIFAPDPAKEKNDSGTKYDYVRPLATI
                     EPTAIYFGLPVNASIGFSRTDDLHAALLAPQYKSSLVVVAWEHKIIEALARKIVSDAG
                     GDAASVPHWASADYDSIYVLRITQSADKVNAAFSVEHEGLNHRSVTCPGT"
     gene            complement(1042..1884)
                     /locus_tag="VKJ77_20060"
     CDS             complement(1042..1884)
                     /locus_tag="VKJ77_20060"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HMC47623.1"
                     /translation="MSRQGKAQAHAVPVLMYHHISTSPGMITVAPDRFAAQMAYLAQA
                     GYQTVGAGQLSAYLAGGSLPAKSVVLTFDDGYLDNWVHAHPVLQRHGFTALCFLVTSW
                     PGDGAPRVHAHSGGELPELLSHHEGDLAIGKGEADRAILRWSEIDAMRRAGTFEFHSH
                     THSHVRWDKVARNREEKCAALRRDLLAARAELETRMGEASDHLCWPQGFYDDDYRQVA
                     RETGFRHFYTCEMGPNIRGAKEADERSIYRLEVRDRPPSWLASRLWVHSRPTLSRAYL
                     AVKR"
     gene            complement(1881..>2933)
                     /locus_tag="VKJ77_20065"
     CDS             complement(1881..>2933)
                     /locus_tag="VKJ77_20065"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003818328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HMC47624.1"
                     /translation="WGGQEHRTLKEMIVLRSRGHAVEVVCPVDARLGVRAKEEGFIVH
                     HARMKGGADVSSMLTIKALLARSNFDVLNTHSGHDSIVAGTAGRLAGTPLVVRTRHLA
                     LPISSLATYTWIPHRVIAVSRHVREYLISAGVSKSRVETIYDGIVKPPALSHSTLRGE
                     LGLGADAIIAGMVAIVRDKKGHEDLIDAVRPMLAERPNLHVVMAGDGPWFDKIKNIVD
                     GLGISDRIHLLGFRTDIPNVLRGCDFFVLPTHQEALGQSYIEAMAAGLPVIGTDVDGV
                     PELITHGVNGLLVPPHDIEALRAAIARLIDHPRLRVQLGVAGRLLTDASFTVDGMADE
                     TIDFYERGISERRLNA"
BASE COUNT          590 a          898 c          863 g          582 t
ORIGIN      
        1 aggccaaggc gcacgacatg gaaaagcagg tggaagaagc caacctgcaa tccgagcgca
       61 aggaacatcc gcaacacatg ttcggtcagg cgctcgcgtt gatcggtgtc gccatttcgc
      121 ttgcggcaat tacgtcgctc acaggcagtc gcaagctgtt tgttgtcgcc gggctggcgg
      181 gtatcgcagg gatcggcgtg tcgattctcg ggttcctgaa tatctgagca gcatgtctga
      241 acagttattt ggctaggtgc ccggacacgt cacggagcga tggttcaggc cttcatgttc
      301 aacgctaaag gccgcgttga ccttgtcagc gctttgcgta atacgcagga cgtaaatgct
      361 gtcgtaatcc gcgctcgccc aatggggcac gctcgccgcg tcgccgccgg catcgctgac
      421 aatcttgcgg gcaagcgcct ctataatctt atgttcccaa gcgactacca ccaggctgct
      481 tttgtattgg ggagccagca gagctgcatg caagtcgtcg gtcctggaaa atccaatcga
      541 tgcgttcacc ggcagaccaa aatagattgc agtgggttcg atcgttgcta gcggacggac
      601 atagtcgtac ttggtgccgc tatcgttctt ttccttcgct ggatcgggcg caaaaatgaa
      661 gtccggcttg ccgtatttgc tttcgatgac ccgaggcaac gcgagcgcgc gattcaggcc
      721 ctcgcaactt agctgaccga ggccggcggc gggtttctca ccgtgccgaa ccatgactat
      781 cgtttcaact tgatcgctag cggcgcaggc cggtaccgac ccaagcgccg cgatagcgaa
      841 caccagcgat aaaacgcctg acggcgggca gcggtaattt ttcatgaggg ggcggccacg
      901 ttgcgtgtga gccgcgattc tagcaatttc cggcttgcag ccatcaagcg atgagggacg
      961 tgcttcaagg agaaacatgg tacgaaattg cgtggtcact cacttgaagc aaaccgtcgc
     1021 acgaagcaag ggatcaatcc atcaccgctt caccgcaaga taagcgcggc tcagggtcgg
     1081 ccggctatgc acccacaacc ttgatgcaag ccaagacggc ggccggtccc gcacctccag
     1141 ccggtaaatc gatcgttcgt cggcttcttt agccccgcga atgttggggc ccatctcgca
     1201 cgtgtagaag tgtctaaaac ccgtctctcg ggcgacttgc cggtaatcgt cgtcgtagaa
     1261 gccttgaggc cagcacaggt ggtcagaggc ttcgcccatg cgcgtttcga gttctgcacg
     1321 cgccgcaagg agatcgcgcc tcaacgccgc acacttctct tcgcggttgc gcgcaacctt
     1381 gtcccagcgc acgtggctgt gcgtgtggct atgaaattcg aacgtccccg cgcgacgcat
     1441 tgcatcgatc tcggaccatc gcaggatggc gcgatcagct tcacccttcc cgatagcaag
     1501 gtccccttcg tggtgactga gcaactcggg caattcgccg cccgagtggg cgtgaacgcg
     1561 tggggcgcca tcgccgggcc aactggtgac cagaaagcac agggcggtaa aaccatgccg
     1621 ctgcagcaca ggatgggcgt gcacccagtt gtcgagataa ccgtcgtcga aagtcagcac
     1681 gaccgacttt gccggcaacg atccgccggc caggtatgca ctcaactgcc cggcccccac
     1741 tgtctgataa cccgcttgcg cgagataggc catttgagcc gcaaagcgat cgggcgcgac
     1801 tgtaatcatt cccggtgacg tactgatgtg gtgatacatc agtacgggca ccgcatgcgc
     1861 ttgcgctttc ccttgcctgc tcacgcgtta agccgccgtt cgctgatacc gcgctcgtag
     1921 aagtcgatgg tttcgtcagc catgccgtcg accgtaaagc tggcatcggt caggagccgt
     1981 ccggcaacgc cgagttgcac gcgcagcctc gggtgatcga tcaggcgggc aatggccgct
     2041 cgcagcgctt caatgtcatg cggtggcaca agcaggccat tcacgccgtg cgtgatcagc
     2101 tccggcacgc cgtcgacgtc cgtgccgatg accggcaacc ctgctgccat agcttctata
     2161 taggactgcc ccaatgcttc ctgatgcgtt ggcagcacga agaagtcgca gccccgcagc
     2221 acattcggaa tgtccgtgcg aaagcctagt agatggatac gatcgctaat ccccagaccg
     2281 tcgacgatat tcttgatctt gtcgaaccac ggcccgtcgc cggccatcac gacgtgcagg
     2341 ttcggacgtt ccgcaagcat gggtcgaacc gcatcgatca aatcctcatg gcccttctta
     2401 tcgcgcacga tcgcaaccat gcccgcgatg atcgcgtccg cgccgagccc gagttcaccg
     2461 cgtaacgtgg aatgcgaaag ggctggcggc ttgacgatgc cgtcgtagat ggtttcaacg
     2521 cggctcttcg atacgcccgc cgaaatcagg tactcgcgca catgccggct cactgcaatg
     2581 acgcgatgcg gaatccacgt gtaggtagca agcgaactga tgggcagagc gaggtggcgc
     2641 gtgcggacca cgagcggtgt gccggcaagc cgtcccgccg tgcccgcaac aatactgtca
     2701 tggccgctat gcgtgttgag aacgtcgaag ttgctgcgcg ccagcagtgc cttgatcgtc
     2761 agcatggacg agacgtccgc gccgcctttc atcctcgcat ggtggacgat gaaaccttcc
     2821 tccttcgcgc gtaccccgag gcgggcatcg acagggcaga cgacttccac agcgtggccc
     2881 cgggagcgca atacgatcat ttccttgagc gtcctgtgtt cctggccgcc cca
//
LOCUS       DATGBK010001441         2015 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_109629, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001441 DATGBK010000000
VERSION     DATGBK010001441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109629"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..629
                     /locus_tag="VKJ77_20070"
     CDS             <1..629
                     /locus_tag="VKJ77_20070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HMC47625.1"
                     /translation="DSMIKAVKFDDISAVKKLLSQCVDPNLVDDTGTPLLVIAAREKS
                     DKVGKLLADNPNIDLEKLDPAGENAMMLAALNDDLNFVNILIAKDAEVNKKGWTPLHY
                     AATNGHDDVVKVLLDHSAYIDSGSPNGTTPLMMAARGGHLSTVKLLLDEGADLRVKNQ
                     IGLTAVDFAKQYHEKDVAEGLAARLASMQNQGAAGASGTPQTGANSAK"
     gene            854..1210
                     /locus_tag="VKJ77_20075"
     CDS             854..1210
                     /locus_tag="VKJ77_20075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rap1a/Tai family immunity protein"
                     /protein_id="HMC47626.1"
                     /translation="MQRVFVMASVLAFPLSAAAFTGNDLNMLCTKTDTASRSACAAYI
                     EGAADGIYNTIEAIGGTSGPQIGQYFCLPVDVKPQELTDAVRKFIADNPTRGNFNATT
                     MVSLGLGKAFPCKAEK"
     gene            1455..>2015
                     /locus_tag="VKJ77_20080"
     CDS             1455..>2015
                     /locus_tag="VKJ77_20080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HMC47627.1"
                     /translation="MISFASFDFDSFERIASAPLNTWPGTLVVAALSVLFAIGVHRVG
                     ARILMRIARPYPLMSVVLRFIDKPALALLIILGLGFVLVETPDALPFAAALRDLLTVM
                     LIVALTWLAVRSVGAVAEALVQAHPLDSRDNLQARRIHTQARVLARSVMVVIVIIGFG
                     GALMTFPAVRQVGASLLASAGVAGLVA"
BASE COUNT          406 a          612 c          612 g          385 t
ORIGIN      
        1 ccgactccat gatcaaggca gtaaagttcg acgacatatc tgccgttaaa aagttgttgt
       61 cacagtgcgt ggatccgaat ctggtcgatg acaccggcac gccgctgctc gttatcgcgg
      121 cgagagaaaa gtcggacaag gtaggcaagc tgctcgccga taacccgaac atcgaccttg
      181 agaagctcga tcccgccggt gaaaacgcga tgatgctggc cgcgctcaac gacgacctca
      241 acttcgtgaa catactgatc gcgaaggacg cggaagtgaa caagaagggc tggacgccgc
      301 tgcactacgc ggccaccaat ggtcatgacg acgtggtgaa ggtgctgctc gaccattcgg
      361 cttacatcga ctcgggttcg cccaacggca cgaccccgct gatgatggcg gcgcgcggcg
      421 gccatttgtc gacggtcaag ctgctgctcg atgaaggcgc cgatttgcgg gtgaagaacc
      481 agattggcct gacggcggtg gacttcgcga agcagtatca cgagaaagac gtggcggaag
      541 ggctggcggc acggctggca tcgatgcaaa accagggcgc agcgggcgcg tccgggacac
      601 cgcaaaccgg cgcaaacagt gcaaaatgac gctcgcgcgg cgaggaactg actcaggttt
      661 gactttggtc tgactgacaa caggtcccga ccgcgcggta cgaggaacag cgggtgtgat
      721 ccgggaatga tgagccgagt aatggcgcgt ccgggtgtgc tcgctgaaaa gacgggcttt
      781 ggccgaaaag acaggacgtt ttcacctgca catccaggcc ggcccgcaac cgccaacata
      841 aaaaaggacc atcatgcagc gggtttttgt catggccagt gtgctcgcgt ttccgcttag
      901 cgcggccgcg ttcacaggca acgatctgaa catgctttgt accaagacgg acacagcctc
      961 acgcagcgca tgcgcggctt atatagaagg tgccgctgac ggcatctaca acaccatcga
     1021 agcaattggc ggcacgtcgg gaccgcagat tggccagtat ttttgcctgc cagtcgatgt
     1081 caaaccgcag gaactgacgg acgcggtacg caagttcatc gccgacaatc ccacgcgcgg
     1141 caacttcaac gccacgacca tggtgtcgct cgggctcggc aaggctttcc cctgcaaagc
     1201 agaaaagtaa accgccattc ggcgtgacac gtttcattca ggctgcccgt caggtcaccg
     1261 gtcgacgcag catatgctgc aatgcaatgc aatagaatag tcatctcatc acgcagccgg
     1321 ccggccaacc cggccggctg ctgatttcat cgctgacgcc actgcgctcc atgcgcacgc
     1381 agacgcaatc gggtttcgca caatcccgtc gtatccctcc gatatcacct tccaaagctg
     1441 atcccacgac gacgatgatc tctttcgctt ccttcgattt cgactccttc gagcgaatcg
     1501 cttccgctcc gctcaatacc tggcccggca cgcttgtggt ggcggcgctc tccgtgctgt
     1561 tcgccatcgg cgtgcaccgc gtgggcgccc gcatcctgat gcgcatcgcg cggccctacc
     1621 cgttgatgag cgtggtattg cgctttatcg acaaacccgc gctcgcactg ttgatcatcc
     1681 tcggcctggg tttcgtgctg gttgaaaccc ccgatgcact gccgttcgcc gccgcgctgc
     1741 gcgacctgct caccgtgatg ctgattgtcg cgctgacgtg gcttgccgtg cgctctgtgg
     1801 gcgcggtggc cgaagcgctg gtgcaggccc atccgctcga cagccgagac aacctgcaag
     1861 cgcgccggat tcacacgcag gcgcgcgtgc tggcgcgttc ggtgatggtg gtgatcgtaa
     1921 tcatcggatt tggcggcgcg ttgatgacgt ttcccgccgt gcgtcaggtc ggtgcgagtt
     1981 tgctggcgtc ggcgggcgtg gcgggactcg tggca
//
LOCUS       DATGBK010001442         1990 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_248348, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001442 DATGBK010000000
VERSION     DATGBK010001442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248348"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1224)
                     /locus_tag="VKJ77_20085"
     CDS             complement(<1..1224)
                     /locus_tag="VKJ77_20085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HMC47628.1"
                     /translation="MGKATGFLEFERQHETYEAPLARVKHYKEFVHALSDENAKIQGA
                     RCMDCGIPFCNNGCPVNNIIPDFNDLVFQQNWKTAIDVLYSTNNFPEFTGRICPAPCE
                     TACTLGINDDPVGIKSIEHAIIDKAWAEGWVAPLPSKHKTGKKVAVVGSGPAGLAAAQ
                     QLARAGHDVTVFEKNDRIGGLLRYGIPDFKLEKWLIDRRVRQMEAEGVAFRTNVFIGK
                     DPLPGHIANSSRETISPDELREQFDAVVIAGGSETPRDLPVPGREMQGIHYAMEFLPL
                     QNRVNAGDSVVDQLIAKGKHVVVIGGGDTGSDCVGTSNRHGAKSVTQFELLSQPPETE
                     NKPLVWPYWPIKLRTSSSHEEGCERDWSVATKRFEGKNGKVEKLIAVRVEWKDGKMQE
                     VAGSEFEMKADLVLLA"
     gene            complement(1324..>1990)
                     /locus_tag="VKJ77_20090"
     CDS             complement(1324..>1990)
                     /locus_tag="VKJ77_20090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006416612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate synthase subunit alpha"
                     /protein_id="HMC47629.1"
                     /translation="FGAFLAKGITLDLVGDGNDYVGKGLSGGRIIIRPTNDFRGKSEE
                     NIICGNTVLYGAIEGDAYFRGVAGERFAVRNSGATAVVEGTGDHGCEYMTGGTVVVLG
                     ETGRNFAAGMSGGVAFVFDADGTFGGKCNKAMVALDPVLQQAEQERTVDRALWHTGKT
                     DEALLKDLIEQHFQSTGSTRAKALLENWDASRRQFVKVFPTEYKRALGEMGAKKSKDA
                     IAA"
BASE COUNT          385 a          669 c          518 g          418 t
ORIGIN      
        1 cgcgagcagc accagatcgg ctttcatttc gaactccgat cccgccactt cctgcatctt
       61 cccgtccttc cattccacgc gcaccgcgat cagcttttca accttgccgt tcttgccttc
      121 gaagcgcttg gtagccaccg accaatcacg ctcgcaacct tcctcatgcg acgacgacgt
      181 acgcaacttg atcggccagt acggccacac cagcggtttg ttttccgtct caggcggctg
      241 cgaaagcaac tcgaactgcg tcacgctttt cgcaccatgc cgattcgatg tcccgacaca
      301 atccgaaccc gtatcgccgc caccgatcac cacaacgtgc ttgcccttgg caatcaactg
      361 atcgacgacc gagtcgcccg cattgaccct gttctgcagc ggcaggaatt ccatcgcgta
      421 atggatgcct tgcatctcac gcccaggcac cggtaaatca cgcggtgttt ccgagccacc
      481 tgcaatgaca acagcatcga attgctcacg caactcatcg ggggaaatgg tttcgcgcga
      541 tgaattcgcg atatgccccg gcagcggatc cttaccgata aacacattgg tccggaacgc
      601 cacgccttcg gcttccatct gccgcacgcg gcgatcgatc agccattttt cgagcttgaa
      661 atcggggatg ccataccgca gcagtccacc aatccgatcg ttcttctcga acaccgtcac
      721 gtcatgtccc gcacgcgcca gttgctgcgc agcggccaat ccggcagggc ccgatccgac
      781 caccgcaacc ttcttgccgg tcttgtgctt cgacggcaag ggtgcgaccc aaccttcggc
      841 ccaggcttta tcgatgatcg cgtgttcgat cgacttgatg ccgaccggat cgtcgttgat
      901 accgagcgtg caagcggtct cacacggcgc cggacaaatg cgcccggtga actccgggaa
      961 gttattcgtg gaatacagca cgtcaatggc cgtcttccag ttctgctgga aaaccaggtc
     1021 gttgaagtcc ggaatgatgt tgttcaccgg acagccgttg ttgcagaacg gaatgccgca
     1081 atccatgcag cgcgcgccct ggatcttcgc gttctcgtcc gacagcgcgt gaacgaattc
     1141 cttgtaatgc ttgacgcgag cgagcggcgc ttcgtacgtc tcatgctggc gctcgaactc
     1201 gagaaaaccg gttgccttgc ccatgtggtt ctctttctct gtattggggg ttaatccacc
     1261 cttcggcgtc tgacgccgaa gggccgtact agtcgttaga tctcagcaga atcagcggaa
     1321 aactcaggcc gcgatcgcat ccttcgattt cttcgcgccc atctcgccaa gcgcacgctt
     1381 gtattccgtc gggaatacct tcacgaactg acgacgcgac gcatcccagt tctcgagcag
     1441 cgctttcgca cgcgtcgaac ccgtggactg gaagtgctgc tcgatcaggt ccttgagcaa
     1501 cgcttcgtcg gtcttgccgg tgtgccacaa agcccggtcc accgtgcgtt cctgttctgc
     1561 ctgctgcagg acaggatcga gggcgaccat cgccttgttg cacttgccgc cgaaggtgcc
     1621 gtctgcatcg aagacaaacg ccacgccgcc cgacatgccc gccgcgaagt tgcgcccggt
     1681 ttcaccgagc acgaccaccg tgccgccggt catgtattcg caaccgtgat cgccggtgcc
     1741 ctccacaacc gccgtcgcgc ccgagttacg cacggcgaaa cgctcgcccg cgacgccccg
     1801 gaaatacgca tcgccttcaa ttgcgccgta taacaccgtg ttgccgcaga tgatgttttc
     1861 ctccgacttg ccgcggaagt cgttagtcgg gcgaatgatg atgcgcccgc ccgacagacc
     1921 cttgccgacg tagtcgttgc catcgccgac gagatccagc gtgatgccct tcgccaggaa
     1981 cgcgccgaaa
//
LOCUS       DATGBK010001443         1677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_86176, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001443 DATGBK010000000
VERSION     DATGBK010001443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86176"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..1374)
                     /locus_tag="VKJ77_20095"
     CDS             complement(100..1374)
                     /locus_tag="VKJ77_20095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC47630.1"
                     /translation="MSMVDLDPPRFQPPRPVAEDDGSRRTVLYGEYTVFSVFQPVFSV
                     SHRRAIGYHASLRARDDSGRQVPSHEVFTQAARRGDLLELGRLAESLHLGNFFSFDSD
                     DEWLFLSLHPAALMDTSYGDALLASLKNIGLPPQRVVLEVPEQAGGETTRFAEIIDSL
                     RKSGFLIALDGFGVKHSNIDRVWHLRPDIVTLDRCILQQASEHSHIERVLPGLVSLLH
                     ESGQLVLMGGLSTERDALIALECNVDFVQGAYFAGPSVEAVKPQAAQGVLDALSAASR
                     ERVAARERTQSARLAPYVGALETAAARLIEGETLANATRTLLQLHETARCFLLDASGR
                     QIGDNVLPVTRASQRAKRFRPLLHSEGASWERRPYFIEALRTPDRVHLTAPYLSINEA
                     HLCVTASIAAHTPRGLQVLCVDINWDVTSQRR"
BASE COUNT          342 a          501 c          537 g          297 t
ORIGIN      
        1 caggaagccg tttcagatag gagatcttgc tcgcaccgtg aaggctgcgc tgacgcgctc
       61 gcatgtgtga tgcagagggt ctgcttcgat acacaacgtt caacgccgtt gtgacgtcac
      121 gtcccagttg atatcgacac acaggacctg caagccgcgc ggcgtatgcg ctgcgatgga
      181 cgccgtcacg cacaggtgcg cctcattgat cgacagatac ggcgcggtca gatgaacccg
      241 gtccggcgtg cgcaacgctt cgatgaaata cggccggcgt tcccagctcg cgccttccga
      301 atgcaacaag ggccggaaac gcttggcgcg ctgcgatgcg cgcgtgacgg gcaagacgtt
      361 gtcgccgatc tgccggccgg aggcatcgag caggaagcag cgcgccgttt cgtgaagctg
      421 caatagcgtg cgggtcgcat tggcgagcgt ttcgccttcg atcaggcgcg ccgccgctgt
      481 ttccagcgca cccacatacg gcgctagccg cgctgactgc gtgcgttcac gcgcggccac
      541 gcgctcgcgc gacgcggcag acaacgcgtc cagcacgcct tgtgcagctt gcggtttcac
      601 ggcttccacg ctgggtccgg cgaaatacgc gccctgcacg aaatcgacgt tgcattcgag
      661 cgcgatcagc gcgtcgcgtt cggtgctcag gccgcccatc aacaccaact gaccggactc
      721 gtgcagcagg gaaacaagcc ccggtaacac gcgctcgata tgcgaatgtt cgctcgcctg
      781 ctgcaggatg cagcgatcaa gcgtcacaat atccggccgc agatgccaca cgcggtcgat
      841 attcgaatgc ttcacgccga agccatccag cgcgatcaga aagccggact tgcgcaatga
      901 atcgatgatt tcagcaaagc gcgtggtctc gccgccagct tgctcgggca cttccagcac
      961 cacgcgctgc ggcggcagtc cgatgttttt cagcgatgcc agcagcgcgt cgccgtagct
     1021 cgtgtccatc aatgcggccg ggtggaggct gaggaacagc cattcgtcgt cgctatcgaa
     1081 ggaaaagaaa ttgcccagat gcagtgattc agccagccgg cccaattcga gcagatcgcc
     1141 gcgccgcgct gcctgcgtga agacttcatg cgatgggact tgccggccgg aatcgtcgcg
     1201 ggctcgcagc gacgcgtgat aaccgatcgc gcgccgatgg gacacggaga acacgggctg
     1261 gaaaacgctg aacaccgtgt attcgccgta caggacagtg cgccgcgaac cgtcgtcttc
     1321 cgcaacggga cgaggtggct gaaagcgggg agggtcgaga tcaaccatgc tcatggtggt
     1381 tttggcaggc gtcgaacgcg gctcgtgtgg gagtaaacat cgggaagaac tagtttacag
     1441 gatagggcca ctccctgaag agcaagaaat atgcgcattt gccggacaat tgagatattc
     1501 ccgccgaaac cgcgcccggc tggggcaggg ctgcggtccg ggttttcaag gcaaggaagc
     1561 ggtgaggctg cgtgcacttt tgtagtgcag cgcgcacggg aagatgattc gcgatggcgc
     1621 gttgctggca gtcatcaatg ccaggcaacg tgccttgagt ggtacatgac tagcgca
//
LOCUS       DATGBK010001444         2467 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_155783, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001444 DATGBK010000000
VERSION     DATGBK010001444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2467
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155783"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..876
                     /locus_tag="VKJ77_20100"
     CDS             <1..876
                     /locus_tag="VKJ77_20100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006399040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47631.1"
                     /translation="KTEQRGFVGGLIIAGFPAAYVTINLVAMLMFAVFPLSGLHSPYV
                     QWGWRIPFVMGAILAGILAMYYVHKVSESETWESESGEKKPEKLPLSDLLRGKSGRNL
                     LQVLLMMSGFWLTQNIITIFMPTGLLVHTLHLSGFQMSLTLLLSYFVLFFSYIGSGML
                     GQKIGRRTFFVVVGPLIATVGAVIFYVLSNVDGLSLPVIMLLVMLLSVLVTSPWGVIV
                     TYINERFVTDVRATGFGVGFSLSVIIPSFYAFYMNWLGAFMPLRLTPVVLLCIGGVIG
                     TVGALMGPETKHVDF"
     gene            894..1814
                     /locus_tag="VKJ77_20105"
     CDS             894..1814
                     /locus_tag="VKJ77_20105"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012248582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC47632.1"
                     /translation="MNTQRIGFIGLGNMGGRMTRRLVGAGIEVLGYDAAPERALAAGA
                     RAATSIAEVIQFADVVLLSLPDSKVVEAVVEGTDGILASCREGQTVIDLSTAAASSTI
                     RLNALFKQRGVQYIDAGISGGAAAAEKGTLTLMVGGDAAAIEAIQWVFKPIATKAITM
                     GESGAGHTTKLLNNFLNAVSLSASAEVMVAGKKAGLDLHRLLDVLNSSSGVNFATQNR
                     FPKIVDGDYLEGGLTSKLMTKDVVLYIDRVRELGVSSLNSSGPLASFGLATALGYGDL
                     ISNRVVDAIGDVSGGVRLKDAKNSSTGEQQ"
     gene            1811..2200
                     /locus_tag="VKJ77_20110"
     CDS             1811..2200
                     /locus_tag="VKJ77_20110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011810699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HMC47633.1"
                     /translation="MKVFRGRAEGAVSEQRSATFSGVVWADSIMPTTDKITIANVFFS
                     PGARTFWHTHEQGQILQVTSGSGFVCVDGGEPQAIRTGDVVWIRANERHWHGAGRNSY
                     MVHTATSLGKTLWEEEVAEAVYQNAVG"
     gene            2205..>2467
                     /locus_tag="VKJ77_20115"
     CDS             2205..>2467
                     /locus_tag="VKJ77_20115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007732626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-carboxymuconolactone decarboxylase"
                     /protein_id="HMC47634.1"
                     /translation="MTAPLTQRQQQAKDAFTLVHGTWSDGWDSLLRLDASFFEAYVAF
                     SAVPSKKNHLDDKVKAFVAITACAAATHLYAPGVAQHIRAALRA"
BASE COUNT          441 a          664 c          824 g          538 t
ORIGIN      
        1 aagacggagc agcgcgggtt cgtcggtggt ctgatcatcg ctggtttccc ggcggcctac
       61 gtgacgatca acctggtcgc catgctgatg ttcgccgtgt ttccgctcag cggcctgcat
      121 tcgccgtatg tgcagtgggg ctggcgtatt ccgttcgtca tgggcgcgat cctggcgggc
      181 attctcgcga tgtactacgt tcataaagta tccgagtcgg agacctggga aagcgagtcc
      241 ggcgaaaaga aaccggagaa actgccgctg tctgatctgc tgcgcggcaa gagcggacgc
      301 aacctgctgc aggtcctgct gatgatgtcg ggcttctggc ttacgcagaa catcatcacg
      361 atcttcatgc cgacgggcct gcttgtgcat acgctgcacc tgtccggttt tcagatgtcg
      421 cttactttgc tgctgtccta tttcgtgctg tttttcagct atatcggctc gggcatgctc
      481 ggccagaaga ttgggcggcg aacgttcttc gtagtcgtgg gtccattgat cgcgacggtc
      541 ggcgccgtca ttttctacgt gctttccaat gtggatggct tgtcgttgcc ggtcatcatg
      601 ctgctggtca tgctgctctc ggtgctggtc acttcgccgt ggggcgtgat cgtgacttac
      661 atcaacgagc gtttcgtgac cgatgttcgt gctaccggct ttggcgtggg cttcagcctg
      721 tcggtgatca ttccgtcgtt ttatgcgttc tatatgaact ggctgggggc gttcatgccg
      781 ttgcggctta cgccggtcgt cctgctatgt atcggcggtg tgattggtac ggtcggcgcg
      841 ctgatgggac cggaaacgaa gcacgtcgat ttttgaactt acggtagaga ctcatgaata
      901 cgcaacgcat tggcttcatc ggtttgggca acatgggcgg tcgcatgact cgtcgcctgg
      961 tcggggcggg cattgaagtg ctgggctatg atgccgcgcc cgaacgcgcg ctcgcagctg
     1021 gtgcacgggc ggcgacgtcg atcgcggagg tgatccagtt cgccgacgtc gtgctgctgt
     1081 cgttgccgga cagcaaggtg gttgaagcgg tggtggaggg gacggacgga attctcgcct
     1141 cgtgccgtga aggacagacg gtgatcgacc tgagcacggc cgctgcaagt tccactatcc
     1201 gactcaacgc gctgttcaag cagcgcggcg tgcagtacat cgatgccggc atttccggcg
     1261 gcgctgcagc agctgaaaag ggcacgctca cgctgatggt cggcggggat gccgctgcga
     1321 ttgaagcaat ccagtgggtc ttcaagccga tcgccacgaa ggcaatcacg atgggcgaga
     1381 gcggcgcggg tcatacgacc aagctgctca acaacttcct gaacgcggtg agtttgtcgg
     1441 cgagcgccga ggtgatggtc gcgggcaaga aggccgggct cgatctccac cggctgcttg
     1501 acgtgctcaa cagcagcagc ggcgtgaact tcgccacgca gaatcgcttt ccgaagattg
     1561 tcgatggtga ctacctggag ggcggcttga ccagcaagct aatgacgaag gacgtcgtgc
     1621 tttatatcga ccgcgtgcgc gagctcggag tgtcctcgct gaattcatcg ggtcccctcg
     1681 cgagtttcgg tttggcaacg gcgctgggtt acggtgacct gatcagtaac cgggtagtgg
     1741 atgcgatcgg cgatgtgtcg ggcggcgtac gtctcaagga tgcgaaaaat tcttcaacgg
     1801 gagagcagca atgaaagtgt ttcgcggcag ggccgaaggt gcagtatcgg agcagcgctc
     1861 ggctacattc agcggtgtcg tgtgggcaga ctcgatcatg ccgacgaccg acaaaatcac
     1921 tatcgcgaac gtgtttttct cgccgggcgc gcgaactttc tggcacaccc atgagcaggg
     1981 gcagatcctg caggtgacgt cgggcagcgg ttttgtgtgt gtagatggcg gcgagccgca
     2041 ggcgatccgc accggcgacg tggtatggat tcgcgctaat gagcgtcact ggcacggggc
     2101 aggacgcaac agctacatgg ttcatacggc gacttcgctc gggaagacgc tgtgggaaga
     2161 agaggtcgcc gaagcggtgt accagaacgc ggtgggctga agccatgacg gctcccctga
     2221 cgcagcggca gcagcaggcg aaggacgcgt tcacgcttgt gcacggcaca tggagcgatg
     2281 gctgggatag cctgttacgg ctcgacgcca gcttcttcga ggcgtacgtg gcgttttcgg
     2341 cggtgccgtc gaagaagaat catctcgatg acaaggtaaa ggcgttcgtc gcgatcaccg
     2401 cctgcgcggc cgcaactcat ctttacgcgc cgggcgtggc gcagcacatt cgcgccgcgc
     2461 ttcgcgc
//
LOCUS       DATGBK010001445         1853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_63563, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001445 DATGBK010000000
VERSION     DATGBK010001445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63563"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..403
                     /locus_tag="VKJ77_20120"
     CDS             <1..403
                     /locus_tag="VKJ77_20120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004553747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4390 domain-containing protein"
                     /protein_id="HMC47635.1"
                     /translation="DAVNKGVPLYFTTDFDLSRPRWYWFDEDPVSVSQSIRLSFQPLT
                     REYRVSTGGLQLGFATLEEALAVIKHVTSWHVIDRNQVKPGETYNASVRMQLDIALMP
                     KPFQIDAVNNRDWNLSSDWKRFTFTAATSAK"
     gene            393..>1853
                     /locus_tag="VKJ77_20125"
     CDS             393..>1853
                     /locus_tag="VKJ77_20125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HMC47636.1"
                     /translation="MLNKLRRRPLRRTNMTGIVVRVLVATVALTAILLLVMLALASAN
                     TEFFDRYYQWLYAANLAVAVVLILIVIGLVAIIITRVRQGKFGTRLLAKLAFIFALVG
                     VVPGGIIYVVSYQFVSRSIESWFDVNVETALTSGLNLGRGMLDASLSDLQNKGRLMSD
                     QLASADPTSLTLTLLRLRDQFNVQDATIVEPARSGSGTAPDVRVVAQASSNFAALVPD
                     DLPTPLQLNQARGRPYGAIEGEVDGDSSQTGAKGALRLRVIVKIPDSSTTELQPAERF
                     LQIEQPVSTGLARNADAVQRAYREYQEKALGRTGLRKMYIGTLTLALFLATFIAMMLA
                     LALGNQLARPLFLLAQGTKEVAEGDYTPKREVKSRDELGFLTQSFNAMTRQLSEARAA
                     VENNRIALEHSKAYLESILANLTAGVFVFDRQFRLTTANRGAERIFRQPFNASLNLPL
                     EQIGVLSEFGAMVRKAFADRDAAASGSGRPIGDRGHW"
BASE COUNT          340 a          552 c          588 g          373 t
ORIGIN      
        1 agacgccgtg aacaagggcg tgcctttgta tttcacaacc gatttcgatt tgtcgcggcc
       61 gcgctggtat tggttcgacg aagacccggt gagcgtgtcg caaagcatcc ggctttcgtt
      121 tcagcccctg acacgcgaat atcgagtctc cacaggaggc ttgcagctgg gtttcgccac
      181 gctcgaggag gcgcttgctg tcatcaagca cgtgacgtcg tggcatgtga tcgatcgtaa
      241 tcaggtcaag cccggtgaga cgtataacgc gtcggtgcgc atgcagctcg atattgcgct
      301 gatgcccaag ccgttccaga tcgacgcggt caacaaccgc gactggaatc tctcttccga
      361 ttggaagcgc tttactttta cggcggcgac cagtgctaaa taaactacgc cgccggccgc
      421 tgcgccgcac gaacatgaca ggcatcgtgg ttcgcgtgct cgtggcaacg gtcgcgctca
      481 cggccattct gctgctggtc atgttggcac tggccagcgc gaacaccgag tttttcgacc
      541 gctattatca gtggctctat gccgcgaatc ttgcggtcgc ggtcgtgctc atcctgattg
      601 tcatcgggct ggtggcgatc atcattacca gggtacggca gggcaagttc ggtacgcggc
      661 tgctcgcgaa actcgcgttt atctttgcgc tcgtgggggt tgtgccgggc gggatcatct
      721 acgtggtgtc gtatcagttc gtgtcgcgca gtatcgaatc atggttcgac gtgaacgtgg
      781 aaaccgcact cacgtccggg ctgaatctcg ggcgcggcat gctcgatgca tcgctgtccg
      841 atctgcagaa caaaggccgc ctgatgagcg atcagctcgc cagtgccgat ccaaccagcc
      901 tcacgctcac gctgttgcga ctgcgcgatc agttcaacgt gcaggatgcg actatcgtcg
      961 agccggcgag aagcggctcc ggtaccgcgc ccgatgtgcg cgtggtggcg caggcatcga
     1021 gtaatttcgc cgcgctcgtg cccgacgacc tgcccacccc gctgcaactg aatcaggcac
     1081 gcggcaggcc gtatggggcg attgaaggcg aggtcgatgg cgattcgagt cagacgggcg
     1141 caaagggcgc cttgaggctg cgggtgatcg tgaagatccc cgacagttcg accaccgaac
     1201 tgcaaccggc cgagcggttc ctgcagatcg aacagccggt tagtaccgga ctcgcccgca
     1261 atgccgacgc cgtgcagcgc gcgtatcgcg agtatcagga aaaagcgctc gggcgcactg
     1321 gcttgcgcaa gatgtatatc ggcacgctga cgctggcgtt gttcctcgcg accttcatcg
     1381 cgatgatgct cgcgctcgcg ctcggaaatc aactcgcgcg gccgttgttc ctgctcgcgc
     1441 aaggcacgaa ggaagtcgcc gagggcgatt acacgcctaa gcgcgaggtg aagtcgcgtg
     1501 acgaactcgg tttcctcacg cagtcgttca acgcgatgac gcggcaattg tccgaggcgc
     1561 gtgccgcggt cgagaacaac cggatcgcac tcgaacattc gaaggcgtat ctcgagagca
     1621 ttctcgcgaa cctgaccgcg ggcgtgttcg tgttcgaccg gcagttccgc ctgaccacgg
     1681 cgaatcgcgg cgccgagcgc atcttccggc agccgttcaa tgcgtcgctg aatctgccgc
     1741 ttgagcagat cggcgtgctg tccgagttcg gcgcgatggt gcgcaaggca tttgcggatc
     1801 gcgatgcagc ggcaagcggc agcggccggc ctattggcga ccgtggtcac tgg
//
LOCUS       DATGBK010001446         3345 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_178735, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001446 DATGBK010000000
VERSION     DATGBK010001446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3345
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178735"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..301
                     /locus_tag="VKJ77_20130"
     CDS             <1..301
                     /locus_tag="VKJ77_20130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HMC47637.1"
                     /translation="RSGGQVADISAVNPHLIHYAQFCDASAIAPVTTAAISDEARFDR
                     RLPGAGGLPLQAFVGALPQGVPLSLEVPNRQLASTVDLDERLRRTLAAARKVVHG"
     gene            629..1840
                     /locus_tag="VKJ77_20135"
     CDS             629..1840
                     /locus_tag="VKJ77_20135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC47638.1"
                     /translation="MKQSRQAGAAVVITVAMATSAHAQNSVTLYGIVDNSLTYQSSQT
                     TLGSTKGGSSNIKMSSGVWAGSRFGLKGAEDLGGGTKAIFQLESGFNSASGAQQYTNA
                     EFGRQAWVGATNPTYGTFTAGRQYTSYYSLLSSYSPTNWLTGFYGAHPGDLDELDTIY
                     RANNSLVYTSPKLYGFTFSGSYSFAGVPGSVNQGSTWSGAVQYVNGPFGIAAGITRIN
                     NSTPGGGAFGTDSTTNSAGQSGVSAVTNGYQTAQAQQRFAVGTGYAFNSAWDVSATYS
                     NVQYIPGIHSLFRDTAIFNTAGAVLHWHASTALDLATGYSYTRATKANGIDSVAQYHQ
                     FNLSQYYALSKRTGLYALQAYQRAKGKTLGTPGESSIINATATLGDGFQSAPSSSQSQ
                     FAAGVGIIHRF"
     gene            2010..3329
                     /locus_tag="VKJ77_20140"
     CDS             2010..3329
                     /locus_tag="VKJ77_20140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47639.1"
                     /translation="MQDVHNSPAVHAGAAVRTRSRTRFVILALLAVGTMINYLDRTVL
                     GIAAPTMTKELGIDAAVMGIVFSAFSWTYALAQIPGGVFLDRFGSKVTYFLALTFWSF
                     FTLLQGFAVGLKSLLLFRFGLGISEAPCFPVNSRVVATWFPQHERARATGIYTVGEYL
                     GLACFAPALFWIMGSFGWRALFVVVGVLGITFGIVWWLFYREPHDSKTVNQAELDYIA
                     AGGGLEPPGGQQTLAFSWSNVGRLLKRRQIAGACLGQFAGNTTLVFFLTWFPTYLATE
                     RHMGWLKVGFFAVMPFLAAAVGVMFGGWVSDLLLKRTGSANIARKLPIIVGLLGASTI
                     ISANFVSSDAMVITILSIAFFGQGMVGLGWTLISDIAPRNYMGLTGGVFNLMANLAGI
                     VTPLVIGFIVSSTGSFVDALLFVGGVALVGALSYIFILGDVKRIEMA"
BASE COUNT          611 a          993 c         1025 g          716 t
ORIGIN      
        1 tcgcagcggc ggccaggtcg ccgacatcag cgcggtgaat cctcatctga ttcactatgc
       61 gcagttttgc gatgcctcgg cgattgcacc cgtgacgacg gcggcaatct cggacgaagc
      121 ccgtttcgat cgtcgtctgc ccggcgcggg tggcctgccg ttgcaggcgt tcgtgggagc
      181 tctgccgcag ggcgtgcccc tgagtcttga agtgcctaac cgccagcttg cttcaaccgt
      241 cgacctggac gagcgtttgc gcaggacttt ggcggccgcg aggaaggtcg ttcacggcta
      301 gggaaaaagg tagttccagc ctaagtgcaa accccaataa tgcgcgatta tcgaacgcat
      361 gcgttcgata atcgatttct ttcaaccgca aaacattgcc ctgaatcgca catgacttta
      421 ttgtgtgaac gtgctgatgc aagacttcaa gtgcggcaca ttcagtcagt acgaagcctt
      481 gtttcaagcc ttattttttg ctgaacacat ccctttagta ccagaacttt ccagccgcca
      541 tcgccaagta gagttatagg ttaggaaagc ttaataagaa agcctgcagc attgaaccca
      601 accgcaagaa ttgaaggagg agacgtagat gaagcaatcc agacaggcag gagccgcggt
      661 cgtcatcacg gtggcaatgg cgacgtccgc gcatgcgcaa aatagtgtga cactgtacgg
      721 tattgtcgat aactcgctga cttatcaaag cagccagacg acacttggtt caaccaaggg
      781 cggaagctcc aacatcaaga tgtcgtcggg cgtatgggcg ggcagccgct tcggcctgaa
      841 gggcgccgag gacctcggcg gcggcaccaa ggcgatcttc cagctcgagt cgggtttcaa
      901 cagtgcgagc ggcgcacagc agtacaccaa cgccgaattc ggccggcagg catgggtggg
      961 tgcgacgaac cccacgtacg gtacgttcac ggccggacgc cagtacacgt cctactattc
     1021 gttgctttcg tcgtatagcc cgaccaactg gctgaccggt ttctacggcg ctcatccggg
     1081 cgacctcgac gaactggaca ccatctatcg tgcgaacaac tcgctggtct atacgtcacc
     1141 caagctgtac gggtttacgt tcagcggctc gtattcgttc gcgggcgtgc cgggcagcgt
     1201 gaaccagggt tcgacatgga gcggcgcggt ccagtacgtc aacggtccgt tcgggatcgc
     1261 ggcgggcatc acgcgcatca ataactcgac cccaggcggc ggcgcgttcg gcacggattc
     1321 gaccacgaat tcggccgggc agtcgggcgt gtctgcggtg accaacggct accagacggc
     1381 gcaggcgcaa cagcggttcg ccgtcggcac aggttatgcg ttcaacagcg cgtgggacgt
     1441 gtcggcgacc tactcgaatg tgcagtacat ccccggtatc cactcgctgt tccgcgatac
     1501 cgcgatcttc aacacggccg gcgccgtgct tcactggcat gcatcgactg cgctcgatct
     1561 ggcgaccggg tacagctaca cgcgtgcgac gaaagcgaat ggcatagaca gcgtcgctca
     1621 ataccaccag ttcaacttgt cacagtatta cgctttgtcg aaacgaaccg gcctgtatgc
     1681 gttgcaggcg taccagcgcg cgaagggcaa gacgctgggg acgccgggcg aatccagcat
     1741 catcaatgca acggctacgt tgggcgatgg cttccagtcg gcgccttcct cgtcgcaaag
     1801 ccagttcgcg gcaggcgtgg gtatcatcca tcgcttctga tacggggctt gctacacgca
     1861 tcggcggcct gggtgaatac ccgggccagc cgcggcggaa ttcagtgttg tgcctggtta
     1921 tccgctagga tcgccactat cgaataacat cgctcgcgaa ccacgatcgc agggcgggaa
     1981 tatcattact ttgagtcagg agacgcctca tgcaagacgt tcataattcc ccggcggtgc
     2041 atgccggcgc cgcggtccgc acgcgctcgc gcacccgctt cgtgatcctc gcgctgctcg
     2101 cggtgggcac catgatcaac tatctggatc ggacggtcct gggtatcgcg gcaccgacga
     2161 tgaccaagga actcggtata gacgcggccg tgatggggat tgtcttctcg gcgttttcat
     2221 ggacctacgc gcttgcccag ataccgggcg gggtcttcct cgatcgcttc ggcagcaagg
     2281 tcacgtactt ccttgcattg accttctggt cgttctttac gttgttgcaa gggttcgctg
     2341 tcggccttaa gtcattgctg ctgtttcgct ttggcctggg catcagcgag gcgccctgtt
     2401 ttccggtgaa tagccgcgtg gtcgccacgt ggtttccgca acacgagcgt gcgcgtgcca
     2461 cggggatcta tacggtgggc gaatacctcg gccttgcatg ttttgcgccg gcgttgttct
     2521 ggatcatggg gagcttcggc tggcgtgcgt tgttcgtggt ggtcggcgtt ctcggcatta
     2581 cgttcgggat tgtgtggtgg ctcttttatc gcgaaccgca cgactcgaag accgttaatc
     2641 aagccgagct cgactacatt gctgcaggcg gcggacttga gccgcccggc ggccagcaga
     2701 cgctggcgtt ctcgtggagc aacgtcggcc ggttgctcaa gcgccgccag atcgcgggcg
     2761 catgcctcgg ccagtttgcg ggcaacacca cgctggtctt tttcctgacc tggttcccga
     2821 cctatcttgc aaccgagcgc cacatgggct ggctcaaggt gggtttcttc gccgtgatgc
     2881 cgttcctcgc ggcagccgtc ggcgtgatgt tcggcggctg ggtgtccgac ctgctgctca
     2941 agcggaccgg ctcggccaac atagcgcgca agctgccgat catcgtcggc ttgctggggg
     3001 cgtccaccat catctcggcg aacttcgtca gcagcgacgc gatggtcatc accatcctct
     3061 cgatcgcgtt cttcgggcag ggcatggtcg ggctcggctg gacgctgatc tcggacatcg
     3121 cgccgcgcaa ctacatgggc ctgaccggcg gtgtgtttaa tctgatggcc aacctggccg
     3181 gcatcgtcac gcctctggtc atcggcttca tcgtcagttc gaccgggtcg ttcgtcgatg
     3241 cgctgctgtt cgtcggcggc gtggctctgg tcggcgcgct gtcctacatc ttcatcctgg
     3301 gcgacgtgaa gcggatcgag atggcctgac ttggccgctt gatga
//
LOCUS       DATGBK010001447         3817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_40683, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001447 DATGBK010000000
VERSION     DATGBK010001447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3817
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40683"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..773)
                     /locus_tag="VKJ77_20145"
     CDS             complement(<1..773)
                     /locus_tag="VKJ77_20145"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HMC47640.1"
                     /translation="MKRYQELACQIEGLIESGVLKPRMRLPSVRQASRSYGISPSTVF
                     QAYYSLERRGLIVARPRSGYFVNCRQPSDLRTAPILAHCAATQTSSLTHRFMQALQDC
                     DNVALASPWPNPELFPLGRLARSLNRTARSMDCGENTAPVPIGEECLRRQIARRYLNM
                     GMVVPIDEIIITSGALDALTLSLQTLTRPGDIVAIGHPTFYGALSAIERLHLKVVEIP
                     VDSHDGLDLDVLAEALGRHPIRVCWFMTSLQNPTGVTLP"
     gene            complement(1199..2785)
                     /locus_tag="VKJ77_20150"
     CDS             complement(1199..2785)
                     /locus_tag="VKJ77_20150"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC47641.1"
                     /translation="MSLGLVGKHSKRRAVEPRRFDFIRGTVILLLAAARLSLAHADTG
                     AGSYTDTNAEHSYSGIIGQLPKTFGEPAPAAETSVRFGAACALPISLPLIPASLAGPD
                     ASPVFPLTRVCDSLLDAFDEGSENTVGSVGEPSLATLEWSAPSQTFLFTLEPRLVSSD
                     AGWSPGDNENAVAHVEDRPQNRTVELAENTSTADDSTCSTSPPCNAHPSPTVSQNKAP
                     TAERIGFATPSVTAGSNALARVWSRLLWPLLLALVAAVGWLLFKRWARYDKALIRAAR
                     TGLRRREFHLEYQPVVSLRQGRCVGVEALLRWDNSAFGSLGPDHYMPFIEKSSLIGRL
                     AQFVLSTATREISAIPDARSLYVSINMSAAHLLSAEFMEDLRATIRASEPMVILELDK
                     DDVMETGPQLARVMTSARALGVQFALAGIGAPFSDLRSYSQMNFEMVKVSRDIFELTP
                     YERSRHFESIIGMAHRLDVMVVVEGVETAAQHAAVRTTQAEYGQGFFYGRALKIARLA
                     AFLADGGGAAILAWRIRKYS"
     gene            3060..>3817
                     /locus_tag="VKJ77_20155"
     CDS             3060..>3817
                     /locus_tag="VKJ77_20155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012406074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC47642.1"
                     /translation="MKRYERLASQIGDLIKRGDLPPGTRIPAVRAACDAYGVSPSTVF
                     RAYYLLESQGLIVARPRSGYFVSAAASGAPLHGEGSPPAEPSKSVDISELVFEVLHSI
                     KDTHTVALGSAFMSPTVFPMQRLGRSCASVNRSTDLAKMVAALPPGDDALRRQIALRF
                     LMAGMVVHVDEIIITSGALDALTLSLQVAQCYMTTQCVIARRQRGHHFFEISRTIDQC
                     ERLSKTLHRKDHGTHECRAECHGMRVLDRVEYFE"
BASE COUNT          763 a         1100 c         1175 g          779 t
ORIGIN      
        1 tccggcaaag tcacaccggt tgggttttga agcgacgtca tgaaccagca gacgcggata
       61 ggatgccgcc caagcgcctc agccagtacg tcgaggtcga gcccatcgtg cgagtcgaca
      121 ggtatctcca cgaccttcag gtgaaggcgc tcgatcgcgc taagcgcgcc gtaaaaggtc
      181 gggtgtccta tagcgacgat atcgccgggg cgggtgagtg tttgcaggct tagcgtcaat
      241 gcatcgagcg cgccgctcgt gatgatgatt tcgtcgatcg gtaccaccat gcccatgttg
      301 agatagcgcc gtgcgatctg gcggcgcagg cattcttcac caatcggcac gggtgcggta
      361 ttttcgccgc aatccatgct tcgggccgtc ctgttcagcg agcgggccaa ccggcccaac
      421 ggaaagagct ccgggttcgg ccaaggggag gcaagggcaa cattgtcgca atcttgcagt
      481 gcctgcatga agcgatgcgt caggctggag gtttgtgtgg ctgcgcagtg cgcgaggatg
      541 ggcgccgtgc ggaggtctga tggctgccga caattgacga aatagcctga gcggggccgc
      601 gccacgatca ggccgcgtcg ctccagtgag taatacgcct ggaataccgt tgacggactg
      661 atgccgtatg aacggcttgc ctgacgcacg gacggcagcc gcatgcgtgg cttcagtact
      721 ccgctttcta tcagtccttc gatctgacac gccagttctt gatagcgctt catgcccgaa
      781 gcggtccttg tattgcttgc gtacctatca tgctgcgcct tcgtgagtca tgctatttgc
      841 gcgcttgcca ccgtcgcgtg agcgacgggt gtgccgtacg ctgcaggtgc ggtacgcgga
      901 ttcttttgcg ccgcgtttgt tgtgagacgc cgtgcgagca gccgaccggt tgtcggcgtc
      961 tgattttgaa cgttccctcg aatgcctaaa ttgtcccttt ggtaaacaaa acccagacaa
     1021 tgcccgtgca tgcggaaatt tagaaggatc agttgagcca agaatcggcg gatcagatta
     1081 tttgtgccga gcgccgggct tgtttcatca agatccccgg cccgggaatg gcgtggttga
     1141 aagcctgcca cgacaacgcg ctgcaactga caccgggctc acgcgccgag cgctcgctct
     1201 acgaatattt cctgatgcgc catgcaagga tggcggcgcc acccccgtca gcaagaaatg
     1261 ccgcaagacg ggcaattttg agcgctcggc cataaaagaa tccctgaccg tattccgctt
     1321 gtgtcgtgcg cacggcggca tgctgcgcgg ccgtttccac gccctccacc acgaccatca
     1381 catcaagacg gtgcgccatg ccgataatcg attcaaagtg acgcgatcgc tcgtagggag
     1441 tgagctcgaa gatgtcccgg cttaccttga ccatctcgaa gttcatttgt gaatacgagc
     1501 gaagatcgga gaaaggcgca ccgattcccg cgagtgcgaa ctgcacacct agtgcgcgag
     1561 cacttgtcat gactcgcgcc agttgcggtc ccgtttccat gacgtcgtct ttatcgagtt
     1621 cgagtattac catgggctcg ctggcacgaa tcgtagcgcg gagatcttcc atgaactccg
     1681 cgcttagcag gtgcgccgcg gacatgttga tgctcacata aagcgacctc gcgtccggga
     1741 tcgcgcttat ctcacgcgta gcagtcgaca gtacgaattg cgccaaccgc ccgatcagac
     1801 tgcttttctc gatgaatggc atgtagtggt cggggcccag cgagccgaat gccgagttgt
     1861 cccatcgcag caacgcctcg acgcccacgc atctgccttg tctcaagctc accacgggtt
     1921 gatattcgag atgaaactcg cgacgcctga gtccagttcg cgctgcgcgt atcagcgctt
     1981 tgtcgtagcg ggcccagcgt ttgaacagca gccatcccac ggcagcaacg agcgccagca
     2041 gaagcggcca gagcagacga ctccagacac gcgccaacgc attggacccg gctgttacgg
     2101 aaggcgtggc gaacccgatg cgctcagctg tcggggcttt gttctggcta accgtcgggg
     2161 aaggatgggc attgcatggc ggactggtcg agcaagtgct gtcatccgct gtcgacgtgt
     2221 tttcggcgag ctcgaccgtc cggttctgtg gccggtcctc tacatgggcg acagcgttct
     2281 cattgtcgcc gggcgaccat ccggcgtcgg aagagacgag gcggggctct agcgtgaaga
     2341 gaaaggtctg cgacggcgcg ctccattcga gcgttgcaag cgacggttcg ccaacgctgc
     2401 ctaccgtgtt ttcgctgccc tcgtcgaacg catcaagcag cgagtcgcac acacgggtga
     2461 ggggaaatac cggactcgcg tcaggacccg cgagcgaggc cggaatcagg ggaagcgaga
     2521 ttggaagtgc gcacgccgcg ccaaaccgga cggacgtctc ggctgccggc gcgggttcgc
     2581 cgaacgtttt cggcagctgg ccaatgatgc cggaatagct gtgttcggca ttcgtgtcgg
     2641 tgtaagagcc cgcgccggtg tccgcgtgtg cgagcgatag ccttgcggcg gccagtagaa
     2701 gtatgacggt cccgcgaatg aaatcgaaac gccgcggctc gacagcgcga cgcttcgaat
     2761 gtttccctac aagacccaac gacatgaatg tctcttcttc gcaaattacg tgggcctgga
     2821 acggtcgaag cgcgactgcg cttgataagg cgctggcgac tcctccggta aaattcggtg
     2881 attggaatgg aagcgcactt tgccagtgaa cggcgtacag cgaaaggggc agattcgtcc
     2941 aaaaaagacg tatcagacgc cttctggaaa gcgcccccgg cgagcgttga caacgggtcg
     3001 catcaggtag agcctatcga ttaagtcatg gtgcagcccg tcttgcatgg gagccgaaga
     3061 tgaaacgtta tgagcggctg gcctcgcaaa ttggcgacct gataaagcgc ggcgacctgc
     3121 cgccgggcac gcgcatcccc gcggttcgcg ctgcgtgcga cgcttatggt gtcagtccat
     3181 ctacggtgtt tcgcgcgtat tacttgctcg aaagccaggg gttgatcgtg gcgcggccac
     3241 gctcgggcta tttcgtttca gcggccgctt ctggcgcgcc cctgcatgga gaaggctcgc
     3301 cgccggcgga accgtcgaaa tccgtcgaca tcagtgagct cgtgttcgaa gtactccact
     3361 cgatcaagga cacgcatact gtggcactcg gctcggcatt catgagtccc acggtctttc
     3421 cgatgcaacg tcttggaagg tcatgcgcat cggtcaatcg ttcgactgat ctcgcaaaaa
     3481 tggtggccgc actgccgcct ggcgatgacg cattgcgtcg tcagatagcg ctgcgcttcc
     3541 tgatggccgg gatggtggtt catgtcgatg aaatcatcat cacgagtggc gcactcgatg
     3601 cgttgacgct gagccttcag gtagcgcagt gctatatgac gacgcaatgc gtcatcgcca
     3661 ggcggcagcg cggccaccat tttttcgaga tcagtcgaac gattgaccaa tgcgaacgac
     3721 tttccaagac gttgcatcgg aaagaccacg ggactcatga atgccgagcc gagtgccacg
     3781 gtatgcgtgt ccttgatcga gtggagtact tcgaaca
//
LOCUS       DATGBK010001448         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_294875, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001448 DATGBK010000000
VERSION     DATGBK010001448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294875"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(161..541)
                     /locus_tag="VKJ77_20160"
     CDS             complement(161..541)
                     /locus_tag="VKJ77_20160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC47643.1"
                     /translation="MIKNILAIDDSAAMRQILSATFVAAGYRVVVAMDGAEAYEAALA
                     EQFDLVITDQNMPAMSGLELIGKLRGHRAYANTPILVLTTESSEPFKASARAVGATGW
                     LEKPFDPDMLTELVATLSGAEHPN"
     gene            complement(622..1611)
                     /gene="motB"
                     /locus_tag="VKJ77_20165"
     CDS             complement(622..1611)
                     /gene="motB"
                     /locus_tag="VKJ77_20165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010107083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HMC47644.1"
                     /translation="MPTNKDRPIFIKRVISNKKSHHGGAWKLAYADFMTAMMAFFLLM
                     WLLSAVSPVQRQGIAEYFNMPLKNAIMGGQGSGMDSSIINGGGRDISSPEPGTTRMSD
                     GTRHVNRLDEQTLREAQGELERRDQARLHDLQVKLMAAIEANPVLRQFRQQIRIDSTQ
                     QGLRIEIVDTQKRPMFALSSNNVEPYMRDILREIGKALNDVPNRIVVQGHTDATQYAG
                     GEKGYSNWELSADRANASRRELISGGMDESKVLRVLGLASTQNLNKKDAFDPENRRIS
                     ILVLNHKSEESMTREDMPATTITSDAGSHGAPGELKPNFGSLAPGLPAKPAVP"
     gene            complement(1645..>2043)
                     /locus_tag="VKJ77_20170"
     CDS             complement(1645..>2043)
                     /locus_tag="VKJ77_20170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018059339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HMC47645.1"
                     /translation="HAEGEGPAQALHKVGDAMPAFGIVAAVMGVVHTMASADQPPAIL
                     GEMIAQALVGTFLGILLSYGLIGPLASVAEQRVAESTKMFQCIKVTILASLNGYAPAI
                     AVEFGRKVLFSTERPSFSELEEHVRRVKAK"
BASE COUNT          342 a          651 c          595 g          455 t
ORIGIN      
        1 aagaatgttt gatagaactg cgtaatgtcg agtgtcatgc ctgggtcacc accggatgcc
       61 ttgtctgtcg tcgctatgcg cgtcgtagaa gctaatgttt tcttcgtgcc tgatgcttaa
      121 tgcttaactc ttcgtgcttc atgcaaaaaa gcggtttact tcaattcggg tgttccgcac
      181 cggacaacgt cgccaccagt tcggtcagca tgtcggggtc gaacggtttt tcgagccagc
      241 ccgtcgcgcc tactgcgcgc gccgatgcct tgaacggctc gctcgactcg gtcgtcagca
      301 cgaggatcgg ggtattcgca tacgcacgat gtccgcgcaa tttcccgatc agctccaggc
      361 cgctcattgc cggcatgttc tggtcggtga tcacgagatc gaactgttcg gcgagcgccg
      421 cttcgtaggc ttctgcgcca tccatggcca ccaccacgcg ataccccgcc gcgacaaacg
      481 tcgccgagag gatttgccgc atggcagccg agtcgtcgat agccagaatg ttcttgatca
      541 tgatgtgtgc agccctctgt ccgatgttcc tgtcgtgctc tcgtgagcgt gtcttatggt
      601 gtcgccgtca tggtgttgcc gtcacggcac cgccggcttg gccggcaatc ccggtgccag
      661 cgagccaaag ttgggtttga gctcgcccgg ggcgccgtgg ctgcccgcat cgctggtaat
      721 cgtggtcgcc ggcatgtcct cgcgcgtcat ggactcttcc gacttgtggt tcaacacaag
      781 aatgctgatg cgccggttct cgggatcgaa agcatccttc ttgttcaggt tctgcgtcga
      841 tgccagtcca agcacccgca acaccttcga ctcgtccatg ccgcccgaga tcagctcgcg
      901 ccgcgaagcg ttcgcgcggt ccgccgacag ctcccagttg ctgtaaccct tttctccgcc
      961 cgcgtattgc gtggcgtcgg tgtgcccctg caccacgatc cggttcggca cgtcgttcag
     1021 cgccttgccg atctcgcgca ggatgtcgcg catgtagggc tccacgttat tgctggagag
     1081 cgcgaacatc gggcgcttct gtgtatcgac gatctcgatg cgcaaaccct gttgcgtcga
     1141 atcaatccgg atctgctgcc tgaactggcg caacaccggg ttcgcttcga ttgcagccat
     1201 caacttgacc tgcaggtcgt gcagacgggc ctggtcgcgc cgttcgagtt caccttgcgc
     1261 ttctctcaac gtctgttcat cgagccgatt cacgtgccgt gtaccgtcgc tcatgcgggt
     1321 ggtgcccggc tcggggctcg aaatgtcgcg cccgccgccg ttgatgatgc tggagtccat
     1381 gccgctaccc tgcccgccca tgatcgcgtt cttgagcggc atgttgaaat actcggcaat
     1441 cccctggcgc tgcactggcg acaccgcgct cagcagccac atcaacagga aaaacgccat
     1501 catcgccgtc atgaagtcgg cgtaagccag cttccaggca ccgccgtgat gcgacttctt
     1561 gttcgatatg acgcgcttga tgaaaatcgg acgatctttg tttgtcggca tggcgggctc
     1621 gatgcgctcg gtctctgaag gcggttactt cgccttcacg cggcgcacgt gttcttccag
     1681 ttcggagaac gacggacgct cggtggagaa gagcactttg cggccgaact ccaccgcgat
     1741 agccggtgcg tagccgttca ggctcgccag gatcgtcacc ttgatgcact ggaacatctt
     1801 cgtcgactcc gccacgcgct gttccgcgac gctcgcgagc gggccgatca acccatagga
     1861 aagcaagatg ccgaggaacg tcccgaccag cgcctgcgcg atcatttcgc ccaggatggc
     1921 aggcggctgg tcggcggaag ccattgtgtg gacgacgccc atcacggccg cgacaatacc
     1981 gaacgccggc atcgcgtcgc ctaccttgtg cagcgcctgc gccgggcctt caccttccgc
     2041 gtg
//
LOCUS       DATGBK010001449         1768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_86273, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001449 DATGBK010000000
VERSION     DATGBK010001449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86273"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..724
                     /gene="holA"
                     /locus_tag="VKJ77_20175"
     CDS             <1..724
                     /gene="holA"
                     /locus_tag="VKJ77_20175"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HMC47646.1"
                     /translation="IDPVERAQLPMWIGQRLQLQNQRVAPGEHGRRALVFIAERVEGN
                     LLAAHQEILKLGLLYPAGVLTFEQIHEAVLNVARYDVFKLNEAMLTGDVGRLTRMLDG
                     LKGEGEAGTLVIWALVEEIRTLLRMKRGMTAGKPLATLLRENRVWGPRERLIGPALTR
                     VTEAALEKALSLAAKLDRQVKGLSGGGGPRGSANPGDPPPNPWDGMFELAMTVASSGS
                     PLQGNVPPPKSSPTPTPARRPS"
     gene            823..>1768
                     /locus_tag="VKJ77_20180"
     CDS             823..>1768
                     /locus_tag="VKJ77_20180"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HMC47647.1"
                     /translation="MTHIDEYMTDLGRRARRASRAMARASTAAKNAALEAIADAIERE
                     RAALKDANARDLARARDKGHDAAFIDRLTLSDKALNTMIEGLRQVAALADPIGEISGL
                     KYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNAAILRGGSEALECNAA
                     LAKLIGEGLEAAGLPQDAVQVVSTADRAAVGKLITMTEYVDVIVPRGGKGLIARLMEE
                     ARVPMIKHLDGICHVYVDDRADMAKALNVCDNAKTHRYGTCNTMETLLVARSIAAEAL
                     PVLAKAFREKEVELRVDAAARAVLEKANFGGPLTDATEA"
BASE COUNT          354 a          538 c          591 g          285 t
ORIGIN      
        1 gatcgatccg gtcgaacgcg cacagttgcc catgtggatt gggcagcggc tgcagctgca
       61 aaaccaacgg gtagcgccgg gcgaacacgg gcggcgggcg ctggtgttta tcgcggaaag
      121 ggtggagggc aacctgctcg ccgcgcatca ggaaatcctc aagctgggtt tgctttatcc
      181 ggcgggcgtg ctcaccttcg aacagatcca cgaagccgtg ctcaacgtcg cgcgctacga
      241 tgtcttcaag ctcaatgaag ccatgctcac cggcgatgtc ggccgtctga cacgcatgct
      301 cgacggcctg aagggcgagg gcgaagccgg cacgctcgtg atttgggcgc tggtcgaaga
      361 aatacgcacg ctgctgcgaa tgaaacgtgg catgacggcc ggcaagccgc tcgccacgct
      421 gctgcgcgag aaccgcgtct gggggcctcg cgaacggctg atcggccctg ccctcacgcg
      481 agtgacggaa gcggcgctgg agaaggcgct gtcgctggcg gcgaaactgg accggcaggt
      541 gaagggctta tccggcggcg gtggtccgcg aggcagcgcg aaccccggcg atcctccgcc
      601 gaatccgtgg gatggcatgt tcgaactcgc gatgaccgtc gcgtcgtcgg gcagtccgct
      661 gcaaggcaat gtgccgccgc caaagtcgtc cccaacgccg acgccggcgc ggcgcccaag
      721 ctgacatcag cataaaatcg ggcttatcga cgtcttttcg actttttacg taacgagaag
      781 acggccgaat accaagcgtc gaacgaaccc tagagaatga cgatgactca catcgacgaa
      841 tacatgaccg acctcggccg ccgtgcgcgc cgggcttcgc gcgcgatggc gcgtgcatcg
      901 acggcggcga agaacgccgc gctagaagcg atagccgatg caatcgaacg cgagcgcgct
      961 gcgttgaagg acgcgaacgc gcgagatctc gcccgcgccc gcgataaagg ccacgacgcc
     1021 gcgtttattg accgcctgac actctccgat aaagccctga acacgatgat cgaaggcctg
     1081 cggcaagtgg ccgcgctggc tgatcctatc ggtgaaatca gcgggttgaa atatcgtccg
     1141 agcggcatcc aggtcggcca gatgcgcgtg ccgctcggcg tgatcgggat catttatgag
     1201 tcgcggccga acgtgactat cgatgccgca gcgctttgcc tgaagtccgg caacgccgct
     1261 atcttgcgcg gcggttccga ggcgctcgag tgcaatgccg cgctggcgaa attgatcggt
     1321 gagggattgg aggcggccgg cttgccgcag gacgcggtgc aagttgtctc cacggccgat
     1381 cgcgcggcgg tgggcaagct gatcaccatg actgaatacg tcgatgtcat cgtgccgcgc
     1441 ggcggcaagg gcctgatcgc acggctcatg gaagaggccc gcgtgccgat gatcaagcac
     1501 ctcgacggca tctgccacgt ctacgtggac gatcgcgcgg atatggcgaa ggcgctcaac
     1561 gtttgcgata acgccaaaac gcacagatac ggcacctgca acaccatgga aacgctgctg
     1621 gtcgcccgaa gcattgcggc agaggcgctg cccgtgttgg cgaaggcgtt ccgggagaag
     1681 gaggtagagt tgcgcgttga cgccgcagcg cgtgccgtcc ttgaaaaggc aaacttcggc
     1741 ggccctctca ccgacgcaac cgaagccg
//
LOCUS       DATGBK010001450         3808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_272194, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001450 DATGBK010000000
VERSION     DATGBK010001450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3808
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272194"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(207..674)
                     /locus_tag="VKJ77_20185"
     CDS             complement(207..674)
                     /locus_tag="VKJ77_20185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HMC47648.1"
                     /translation="MATVAQLLSSKTDQSFHTIEASASVFDAIKLMAHKQIGALVVTS
                     GEHITGIVTERDYARKIVLHDRLSKETPVGDVMSKAIRYVRLNQTTDECMTIMTENRI
                     RHLPVIDGGLLIGMVSIGDLVRNLIVEQQFTIHQLEHYIRGNSHAAELDVETR"
     gene            complement(751..1071)
                     /locus_tag="VKJ77_20190"
     CDS             complement(751..1071)
                     /locus_tag="VKJ77_20190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004524899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HMC47649.1"
                     /translation="MKCPVCKTPDLLMADRQGIEVDYCPTCRGVWLDRGELDKLIERA
                     ADESLSQAQAAAASTPVARRHDEGRHYNDHDRRNGYGDDEYRDRRYPYKKKKSLLGDL
                     FDFG"
     gene            1213..2106
                     /gene="nhaR"
                     /locus_tag="VKJ77_20195"
     CDS             1213..2106
                     /gene="nhaR"
                     /locus_tag="VKJ77_20195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator NhaR"
                     /protein_id="HMC47650.1"
                     /translation="MNFKHLYYFWAAAHAGGIARAGTQLHITPQTLSGQIKLLEDALN
                     KKLFKKSGRNLELTDAGRLALDYADEIFSLGAELESAVRQEKEAARAQLRVGVADSVP
                     KTVAYRLLEPALNLSDSLRLICHEGQLHALLSQLAVHRLDLIIADAPIPPDVNVKAFN
                     HSLGRSTLSCFASKALAVRAAKAFPASLSDMPVLLPGTDSAIRRKLDHWLKSRTISPR
                     VVGEFDDSALTLAFGREGRGVLFAPTVLAAQLKREHGLIAVGHIDTIVEEFFAISIER
                     RISHPAISSIMSTARSELFNE"
     gene            complement(2266..2532)
                     /locus_tag="VKJ77_20200"
     CDS             complement(2266..2532)
                     /locus_tag="VKJ77_20200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HMC47651.1"
                     /translation="MERDDFIEMLAREGFQTTVLVEREAGAFLDDHAHAFEAKALILE
                     GELTLRVGNKDTRYQPGDMFHLRANETHSERYGPEGVCYLVGRK"
     gene            complement(2613..3581)
                     /locus_tag="VKJ77_20205"
     CDS             complement(2613..3581)
                     /locus_tag="VKJ77_20205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HMC47652.1"
                     /translation="MLSRVTRLFPLWAVLISVVAYFSPATFTGIAPHVTLLLTIIMFA
                     MGVTLSFADFRRVFTRPAPVIAGIGLHYLVMPLAAWAIAKLLRMPPDLTAGMVLVGSV
                     ASGTASNVMIYLARGDVALSVTISALSTLVGVFATPLLTRLYVDASIAVDVHGMLMSI
                     LQIVALPIVAGLIINQLFNKTVRAVEPALPIISMLAILLIISAVVAGTQKSIASVGLL
                     VMLGVILHNGIGLLGGYWGGRLLGFDEAVCRTLAIEVGMQNSGLAATLGKLYFTPIAA
                     LPGALFSVWHNLSGSLLAGYWAGRPAKGSTRDLEAIGLAEGSRLDR"
BASE COUNT          805 a         1118 c         1097 g          788 t
ORIGIN      
        1 ccgaaaccca tgcgcatggg tcttgccgca aactgatcac atcacagccc ctgggctcgc
       61 cactcttcac ttttaggatg gttgcgccct accgaagcag gaattcggta gggcgcgctt
      121 tcgcgcctca tgcaacgtga cctcgccacg agattcattc gacctggctt gagtccgcca
      181 gggttcccaa caaccgcagc gcatgtctag cgcgtttcga catccaactc tgctgcatgg
      241 ctgttgccgc gaatgtagtg ttccaactgg tggatcgtga attgttgctc gacgatcagg
      301 ttcctgacga gatcgccgat cgataccatg ccgatcagaa ggccgccgtc gattaccgga
      361 agatgacgta tccggttttc ggtcatgatc gtcatgcact cgtctgtcgt ttgattgaga
      421 cgcacgtatc ggatggcttt cgacatgaca tcgcccacgg gtgtctcttt tgacaacctg
      481 tcgtgcagca cgattttccg ggcatagtcg cgctctgtaa cgatgccggt aatatgctct
      541 ccggacgtga ccacgagcgc gccgatttgt ttatgtgcca tcagcttgat cgcgtcgaag
      601 acactcgccg acgcctcgat cgtgtgaaat gactgatctg ttttcgaact cagcagttgt
      661 gcgacggttg ccatcatgtg cctcagttaa gaaataggtt tgagctgctg cccgtgttgc
      721 gcggctatct gcgcttttca gccgaagtcg tcagccgaag tcgaacaggt cgccgagaag
      781 cgacttcttc tttttgtacg gataacgccg gtcgcgatac tcgtcatcgc cgtaaccgtt
      841 gcggcgatca tggtcgttgt aatgacggcc ttcgtcatgc cgacgcgcga ccggcgtact
      901 tgccgctgcc gcctgcgctt ggctgagaga ttcgtcagcg gcgcgctcga tcagtttgtc
      961 gagctccccg cgatccagcc acacgccgcg acatgtcggg caataatcga cttcgattcc
     1021 ctggcggtcc gccatcagca gatccggcgt cttgcacact ggacatttca ttaccttgcc
     1081 tccttcgtca aacaccctag cgaagcctca atgtagcgga tgtagggata atgtaaaatt
     1141 cgtattttcg gcgtcaatac ttcgagaaaa tcgatgtatc ccgacaccgc gagcatcgct
     1201 atggaggcgt gaatgaactt caagcatttg tattatttct gggccgcggc gcatgcgggc
     1261 ggcattgcgc gtgccggcac gcagttgcac atcacgcctc aaacgctgag tggccagatc
     1321 aaactgcttg aggacgcgct caataaaaag ctcttcaaaa agagcggccg caaccttgaa
     1381 ctgacggatg cgggccggct tgcactcgat tacgccgatg aaatcttttc gctcggtgcc
     1441 gagctggaga gcgcggtcag gcaggagaag gaagccgcgc gggcgcaact gcgcgtgggc
     1501 gtggccgatt cggttccgaa gacggtggcc tatcgactgc tcgagccggc actgaacctg
     1561 tcggactcac tgcggctgat ctgtcatgag ggccagctgc atgctttgct ttcacagtta
     1621 gccgtacata ggctggacct gatcattgcc gacgcaccca tcccgcccga tgtgaacgtc
     1681 aaggcgttca accattcgct tggccgctcg acgctcagtt gtttcgcatc gaaagccttg
     1741 gcggtacgcg ccgccaaagc tttccccgca tcactgagcg acatgccggt actgttaccc
     1801 ggcactgatt cagcaatccg aaggaaactc gatcactggc tgaagtcgcg cacgatctcg
     1861 ccgcgcgttg taggagagtt cgacgacagc gcgctgacgc tcgcttttgg ccgcgaggga
     1921 aggggagtgc tatttgcacc gacggtcctg gccgcacaac tcaaacgaga gcacggtttg
     1981 attgcggttg gacacatcga cacgattgtt gaggaattct tcgccatctc cattgaacgg
     2041 cgcatcagcc atcccgctat atcgtcgatc atgagcacgg cgcgcagcga actgttcaat
     2101 gagtaggtaa cgcccaagtt gcatgacttt gtacgccgcc gacatgccga ttggttcggt
     2161 cctgaaggag tgaccatgcg atgcagcgaa gccgatgtgt tctccggctt cgctctctaa
     2221 tgatggaatg gccggtgttc atctgccgtc atgctggccg tcatgctatt tcctgcctac
     2281 gagatagcag acgccttcgg gaccgtaacg ctcgctatgc gtttcgtttg ccctcaaatg
     2341 gaacatgtcg cctggttgat agcgggtgtc tttgttgccg acgcgcagcg tcagctcacc
     2401 ttcgagaatc agcgccttgg cttcgaacgc atgcgcatgg tcgtcaagaa acgcgccggc
     2461 ttcgcgctcc actagcacgg tggtttgaaa accctcgcgc gcgagcattt cgatgaaatc
     2521 gtcgcgttcc atgatcgttc cccttctagt gggtctttat ccacccacta atataagttg
     2581 aaacgacacg gcgcaggcga ggatgcttag cgtcagcggt ccagccgcga accttccgcc
     2641 aaccctatcg cttcaagatc acgcgtcgag cccttggcag gccgtccagc ccagtaccct
     2701 gccagcaacg atcccgacaa gttgtgccac accgaaaaca gcgcacctgg gagcgctgcg
     2761 atcggcgtga aatacagctt gcccagcgtg gcagcgagtc ctgaattctg catgccgact
     2821 tcgatcgcca gcgtgcggca gacggcttca tcgaaaccaa gcaggcggcc gccccaatat
     2881 ccgccaagca agccgattcc gttatgcagg atcacgccaa gcatcaccag caagccgacc
     2941 gacgcaatac ttttctgcgt tcccgccacc acggccgaga taatcagcag gatcgcaagc
     3001 atcgaaataa tcggcaacgc gggctcgacc gcacgcacgg tcttgttaaa caactgattg
     3061 atgatcagcc cggccacgat aggcagcgcg acgatctgga gaatgctcat gagcatgccg
     3121 tggacatcga cggcaatcga cgcgtccacg taaaggcgcg tcagcaacgg tgtggcgaac
     3181 acgccgacca gcgtggaaag tgcactgatg gtgacggaca gcgccacgtc gccgcgcgcg
     3241 agatagatca tcacgttcga cgccgtgccg ctggcaacgc tgccgaccag caccattcca
     3301 gcggtcaggt cgggtggcat gcgcagtaat tttgctatcg cccaggccgc gagcggcatc
     3361 accaggtaat gcagaccgat gcccgcgata accggcgccg gccgggtgaa aacacgccgg
     3421 aagtcggcga acgaaagcgt cacgcccatc gcgaacatga tgatggtgag tagcagggtg
     3481 acgtgcggcg cgatgccggt gaacgttgcc ggcgagaagt acgcgacgac agaaatgaga
     3541 acggcccaaa gagggaacaa gcgggtgacg cgcgaaagca tggagagacg atcctggctg
     3601 atggataagg gcgtcgccca gagcgtccgg gtgcagaggg cacacggtgc cgggcaaata
     3661 acgataaagc gaagggtgtt ccagactcgg ctgaccatgc catcgatata tgcggccagt
     3721 gacgcaagcc gtcgcgggtt cttgtgggac cggcaggcgg cgaatgtgcg tcgacgcgaa
     3781 ttgtaccgtt tcgtcggacg agatctgc
//
LOCUS       DATGBK010001451         3243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_294896, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001451 DATGBK010000000
VERSION     DATGBK010001451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3243
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294896"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..851
                     /locus_tag="VKJ77_20210"
     CDS             3..851
                     /locus_tag="VKJ77_20210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018439296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47653.1"
                     /translation="MQNLSLILQQTMVVAVIAIGQTLIVLTGGIDLSCGMLMAFGSIV
                     MTKFAVTLGVPPVLAIICGVAASTLFGLLNGTLITKIKLPAFIVTLGTLNIAFALTQV
                     YSNAESISNLPDAMMFFGNTFHLGGAEVTYGTVLTLLMYLVVWFVLRDTVPGRHLYAL
                     GNNAEAARLMGLSSQKILITVYTLAGFFYGIAALLSVARTGVGDPQAGQTENLDSITA
                     VVLGGTSLFGGRGTIVGTLLGALIVGVFRNGLTLIGVSSVYQILITGILVILAVAADK
                     LARPRA"
     gene            864..1646
                     /locus_tag="VKJ77_20215"
     CDS             864..1646
                     /locus_tag="VKJ77_20215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018423406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47654.1"
                     /translation="MNDTIKPVLEARGVIKRYGSVTALDGVDFELMPGEIMAVIGDNG
                     AGKSSLIKALSGALVPDEGEILLDGNPVHFRSPLDARSQGIETVYQDLAVAPAMSIAE
                     NLFLGRELRRPGILGSVFMMIDKRRMLQEAIAHMEGLQIGIRSMKQAVETLSGGQRQG
                     VAVARSAAFARHVVILDEPTAALGVKESNMVLELIRRVRDRGLPVILISHNMPHVFEI
                     ADRIHIQRLGRRAALVKTKDIHMSEAVAIMTGAKQADVQAIA"
     gene            1665..2864
                     /locus_tag="VKJ77_20220"
     CDS             1665..2864
                     /locus_tag="VKJ77_20220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HMC47655.1"
                     /translation="MSASTAMPKPAGMRQMNERIVLQAVRVHGPCPKSEIARLTHLST
                     QTTSLIVDRLIDDGLLAREARTRVQGRMGQPSVPISLRADGAFSIGVKVGRRSLDVLT
                     MDFAGQVHARDVIEYAYPDPRTVFALLSKKIDQMMVALGNDAAKVVGIGVAAPLWLGG
                     WRNFFDTPPDVFAAWNEIDISARVQALTTLPVEFAKDTTAACAAELLMGQGRGLNDFL
                     YVFIGTFIGGGLVIDGRLHAGPKGNAGAIGSFPLMSEGTPQLPQLLNVASVYVLEKRF
                     TDAGFPAAAAHDQRALSAQLWPLCEAWLDAACPALATAIATAAALVDVDAIVIDGELD
                     RQLLREVLSRTNTALDAFDWQGMLRPRLVEGEIGADARAMGGAILPLYAHFAPRHVLF
                     LKSGMSA"
     gene            complement(2993..3235)
                     /locus_tag="VKJ77_20225"
     CDS             complement(2993..3235)
                     /locus_tag="VKJ77_20225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HMC47656.1"
                     /translation="MGTIIIGGIIGLIARAIKPGNNSIGWIMTILLGIAGSLVAGYVG
                     RALGWYHEGQAAGWIASVVGAIVLLFVWGLVVRRRA"
BASE COUNT          588 a          931 c         1049 g          675 t
ORIGIN      
        1 cgatacaaaa tctctcgctg attcttcagc agaccatggt cgtggcggta atcgcgatcg
       61 gccagacgct gatcgtgctg accggcggaa ttgatttgtc gtgcggcatg ttgatggcat
      121 tcggctctat tgtgatgacg aagttcgccg tcacgttggg cgtgcctcca gtgcttgcca
      181 tcatctgtgg cgtggcggca agcacattat tcggattgct gaacggtacg ctcatcacga
      241 agatcaagtt gcccgcgttc attgtcacgc tggggacgct gaacatagcg ttcgcgctga
      301 cgcaggtgta ctcgaatgcc gagagcatct cgaacctgcc ggacgccatg atgttcttcg
      361 gcaacacctt ccatctcggc ggcgcggagg tcacgtatgg caccgtgctg accctgttga
      421 tgtacctcgt ggtgtggttc gtgttgcgcg atacggtgcc cggccgccat ctctacgcgc
      481 tcggtaacaa tgccgaagcg gcgcggctga tgggactttc gtcgcagaag atcctgatca
      541 ccgtgtacac gctcgcggga tttttctatg gcatcgcggc gctgttgtcg gtggcgcgaa
      601 ccggtgtggg cgatccacag gcgggccaga ccgagaacct cgacagcatc acggccgtcg
      661 tgctcggcgg caccagtctg ttcggcggac gcggcacgat tgtcgggacc ttgctgggcg
      721 cgttgattgt cggcgtgttc cgcaatggtt tgacgctgat tggcgtgtcg tcggtttatc
      781 agattctgat aacaggcatc ctggtgatcc tcgcggtcgc cgccgataaa ctcgcgcgtc
      841 ctcgcgcctg aggagccaag ctcatgaacg acacaatcaa acccgttctg gaagcacgcg
      901 gcgtcatcaa gcgctacggt tccgtgactg cactcgacgg cgtcgatttc gaactgatgc
      961 ccggcgagat catggcggtg atcggcgata acggggccgg taaatcgtcg ctgatcaagg
     1021 cgctttccgg cgcgctcgtg cccgacgaag gcgagatcct gctggacgga aatcccgtgc
     1081 attttcgcag tccgctcgat gcgcgctcgc aaggtattga aaccgtctac caggaccttg
     1141 cagtcgcgcc ggcaatgagc attgcggaga acctttttct cgggcgcgag ctaagacgtc
     1201 ccggcatcct cggctccgtg ttcatgatga tcgacaagcg gcgcatgttg caggaagcca
     1261 tcgcgcatat ggagggattg cagatcggca tccgttcgat gaagcaggct gtcgaaacac
     1321 tttccggcgg tcagcgccag ggcgttgcgg tggcgcgcag cgcggcgttc gcgcggcatg
     1381 tggtgatcct cgatgaaccc accgcagcgc ttggcgtaaa ggaatcgaac atggtgctgg
     1441 agttgatccg gcgggtgcgt gatcgcgggc tgcctgtcat tcttatcagc cacaacatgc
     1501 cgcatgtgtt cgagattgcc gaccgcattc acatccagcg gctcgggcgg cgtgcggcgc
     1561 tggtcaagac gaaagacatt catatgtcgg aagcggtggc catcatgacc ggtgcgaagc
     1621 aggccgacgt gcaggcaatc gcctgattcc ctatgacgcc ttcaatgtcc gcgagcacgg
     1681 caatgccgaa gccggccggc atgcggcaga tgaacgagcg tatcgtgctt caggcggtgc
     1741 gtgtccacgg tccatgcccc aagtccgaga tcgcgcgctt gactcatcta agcacgcaga
     1801 ccacgtcgct gatcgtggat cgactgatcg acgatggtct gctcgcccgg gaagccagga
     1861 cgcgcgtgca ggggcgcatg gggcagccgt cggtgccgat ctcgcttcgc gcggatgggg
     1921 cgttttctat cggcgtgaaa gtggggcgcc gaagtctcga tgtgctgacc atggatttcg
     1981 cgggccaggt gcatgcgcgg gatgtgatcg agtatgcgta tcccgatccg cgtacggtgt
     2041 tcgctttgct cagcaagaag atcgatcaga tgatggtcgc gctcggcaat gacgcagcca
     2101 aggtagttgg aataggcgtg gcagcgccgt tatggcttgg cggctggcgc aatttcttcg
     2161 ataccccgcc ggacgtcttc gccgcgtgga acgagatcga tatcagcgcg cgagtccagg
     2221 cgttgaccac gttgccggtg gagttcgcga aggacaccac cgctgcctgc gccgctgaat
     2281 tgctgatggg gcaagggcgc ggattgaacg actttctcta tgtgtttatc ggcacgttca
     2341 ttggcggcgg cctggtcatt gatggacggc tgcatgccgg gcccaagggg aacgcgggtg
     2401 cgatcgggtc gttcccactg atgagcgaag gcacgccgca gttgccgcag ttactcaacg
     2461 tggcgtcggt gtatgtactg gaaaagcgct tcaccgatgc cggttttcct gccgctgccg
     2521 ctcacgatca acgtgcgctg tcggcgcagt tgtggcctct gtgcgaggct tggctcgatg
     2581 ccgcttgccc ggcgctcgcc acggccattg caacggcggc ggcgctggtc gacgtcgacg
     2641 cgatcgtgat cgacggggaa ctggatcgcc agttgttgcg ggaagtatta agccggacca
     2701 ataccgcgct cgatgccttc gactggcagg ggatgttgcg gcctcgactg gttgaagggg
     2761 agattggcgc cgatgcccgc gcgatgggtg gtgccatcct gccgttgtac gcgcactttg
     2821 cgccccggca tgtgttgttc ctgaagtcgg ggatgagcgc atgatgggcg cgatgtcctt
     2881 aggtccctag tggtggcccg gacaaaatga aaaaggcagt tccaaccttc gttggaactg
     2941 cctttttcat tcgacccgaa agctcacacg cgcaaatcgg gtctcgcgtg tttcaggccc
     3001 ggcggcgcac gaccagcccc cagacgaaca acaagacaat tgcgccgacc acggaggcga
     3061 tccaccccgc agcttgtcct tcgtgatacc agccgagcgc gcggccgacg tagccggcca
     3121 ccagcgaccc ggcaatgccc agcaggatgg tcatgatcca gccgatgctg ttgttgcccg
     3181 gtttgatcgc cctcgcgatc aaaccaataa tgccgccgat gataatggtg ccgataagtg
     3241 aaa
//
LOCUS       DATGBK010001452         2122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_40744, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001452 DATGBK010000000
VERSION     DATGBK010001452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40744"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2122)
                     /locus_tag="VKJ77_20230"
     CDS             complement(<1..>2122)
                     /locus_tag="VKJ77_20230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC47657.1"
                     /translation="HEYGLAPLLDSSWAAQPLALYRRREPPMLVLDDDGGEPLHRSLG
                     RPLELTRCLRIAANLARVVGHVHRCGLVHKDIKPANVLVDGNGNVRLTGFGIASQLPH
                     EHQPPSPPEIVAGTFAYMAPEQTGRMNRSIDTRSDLYSLGVTLYEMLTGSLPFTASDA
                     MEWIHCHIARRPTPPGERVDGIPATVEGIVLKLLAKAAEDRYQTAAGVEADLRSCLVA
                     WEARHRIEPFPLGAHDASDRLLIPEKLYGRGAQIEALVTAFDRVVANGAVELVLISGY
                     PGIGKSSVVSELHRVLVPPRGLFASGKFDQYKRDIPYVPFAQAFQTLVRNLLSKSDAE
                     VETWRHALMEALGPNGQLIVNLIPELALIIGEQPGAPTLPPQDAQNRFQIVFRRFLGV
                     FAQPEHPLALFIDDLQWVDTATLDLLAHLVTHPDVKHVLLVGAYRDNEVDASHPFART
                     LESINHAEGRLRQIELAPLTPDSVTQLVADSLHCDSATAGPLAQLVHEKTGGNPFFTI
                     QFLTTLTDEDLLTFDQRAAMWCWYLPRIRAKGFTENVADLMAAKLSRLPPLTQDALGQ
                     LACLGNVAEVTALTWVQGGSEETMHANLWEAVRTGLVFRDANAYEFAHDRVQEAAYAL
                     IPADERAAAHLRIGRALVSRTAPEALEDAIFDIVNHLNRGATLIVTESEREQAVALNL
                     IAGIRAMSSTAYAAALSYLAQGVGL"
BASE COUNT          410 a          661 c          675 g          376 t
ORIGIN      
        1 agcccgacgc cctgggcgag atagctgaga gcggccgcgt aggccgtcga actcatcgcg
       61 cgaattcctg caatgaggtt cagcgcaacg gcctgctcgc gctccgactc ggtcacgatc
      121 agcgttgcac cgcgattgag atggttgacg atgtcgaaga tggcatcttc aagcgcttct
      181 ggcgcggtcc gcgacaccag cgcccggcca atccgcagat gagcggcggc gcgctcgtcg
      241 gcggggatca gcgcataagc ggcctcctgc acgcgatcat gtgcgaattc ataggcgttg
      301 gcatcgcgaa aaacgaggcc cgtccgcacg gcttcccaca ggttcgcgtg catcgtttcc
      361 tcagatccgc cctgaaccca agtaagagcg gtgacttcgg cgacgttgcc caggcacgcc
      421 aactgcccca atgcgtcttg cgtcaaagga ggcaaccggc tcagcttcgc cgccatcaga
      481 tccgcgacat tctcggtaaa acccttcgca cgaatgcgcg gcagatacca gcaccacatc
      541 gcggcgcgtt ggtcgaatgt aagcaggtct tcatcggtga gcgtcgtcag gaactggatc
      601 gtgaagaatg gattgccacc tgtcttctcg tgcaccagtt gcgcgagcgg cccggccgtc
      661 gcgctgtcgc aatgaagcga atcagccacg agttgcgtga cgctatccgg tgtgagcggc
      721 gcgagctcga tctgccgcag ccgcccttca gcgtggttga tcgactcgag cgtgcgcgca
      781 aacgggtgcg acgcatccac ctcgttgtcc cggtaggcac cgacgagcag gacgtgcttc
      841 acgtcaggat gcgtgacgag atgtgcgagc aggtcgagcg tcgcggtatc gacccattgc
      901 agatcgtcga taaacagcgc gagcggatgc tcaggttgcg caaacacgcc gagaaaacgc
      961 cgaaatacaa tctggaagcg gttttgcgca tcttgcggcg gcagagtagg cgcgcccggc
     1021 tgctcgccga tgatgagcgc caactcaggg atcagattca caatcagctg accattgggc
     1081 ccgagcgcct ccatcagtgc gtgccgccac gtctcgacct ctgcatcgct cttgctcagc
     1141 aggttgcgta cgagcgtctg gaaggcttgc gcaaatggca cataagggat gtcacgtttg
     1201 tattggtcga acttgccgga cgcgaacaga ccccggggcg gcaccagcac gcggtgcaac
     1261 tcgctgacga ctgacgactt gccaatgccc ggatagcccg agatcagcac cagttcgacc
     1321 gccccgttcg cgacgacacg atcgaacgct gtaacaagcg cttcgatctg tgccccgcgt
     1381 ccgtacaatt tctcagggat cagcagccgg tctgacgcgt cgtgcgcgcc cagcgggaac
     1441 ggctcgatcc ggtggcgcgc ctcccatgcc acaaggcacg accggaggtc agcctcgaca
     1501 cccgccgcgg tctgataacg gtcttcagcg gccttggcga gcagcttaag gacgatgccc
     1561 tcgaccgtcg caggaatacc gtcgacgcgc tcgcctggcg gtgtcggcct gcgagcgatg
     1621 tggcaatgaa tccattccat cgcgtccgat gcagtgaacg gcagcgaccc ggtgagcatc
     1681 tcgtacagtg tgacgccaag cgagtagaga tcgctgcgcg tgtcgatcga gcggttcatg
     1741 cgccccgtct gttcaggcgc catatacgcg aaggtgccgg caacgatctc cggtggcgag
     1801 ggcggttgat gttcgtgcgg cagttgcgag gcgatgccga agccggtgag ccgcacgttg
     1861 ccgttcccgt cgacgagcac atttgccggc ttgatgtctt tgtgaacgag accgcatcga
     1921 tgaacgtggc cgaccaccct cgccagattc gcggcgatgc gcaaacaacg cgtgagctcc
     1981 agcgggcggc cgagcgagcg atgcaggggt tcgccaccgt cgtcgtcgag aacgagcatg
     2041 ggcggctccc tgcggcggta cagcgcgaga ggttgagctg cccagctgga atcgagcaac
     2101 ggggctaagc cgtattcgtg tt
//
LOCUS       DATGBK010001453         5282 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_63688, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001453 DATGBK010000000
VERSION     DATGBK010001453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5282
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63688"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..889)
                     /gene="ugpC"
                     /locus_tag="VKJ77_20235"
     CDS             complement(<1..889)
                     /gene="ugpC"
                     /locus_tag="VKJ77_20235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HMC47658.1"
                     /translation="MAALSLQGVKKTYDSKQFVLHGIDVEVTDGEFVVMVGPSGCGKS
                     TLLRMVAGLESVSEGTISIGEKVVNTLEPKDRDIAMVFQNYALYPHMSVAQNMAYALK
                     IAGVSKSEIDRRVQNAAKILELEPLLARKPRELSGGQRQRVAMGRSIVREPAVFLFDE
                     PLSNLDAKLRVQMRLEIQRLHARLATTSLYVTHDQIEAMTLAQRVIVMNRGRAEQIGP
                     PTEVYERPATVFVASFIGSPAMNLLEGRVSDDGLGFDVAGNGPRLPLAGMQSLQQDLK
                     GREWVLGIRPEHMLPEQQSA"
     gene            complement(900..1208)
                     /locus_tag="VKJ77_20240"
     CDS             complement(900..1208)
                     /locus_tag="VKJ77_20240"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HMC47659.1"
                     /translation="MILEVAQLPVKAGEEAAFETAFAEAEKIISAQPGYLSHELVRGA
                     DADNGSHYVLLVRWETVAAHQEGFRNSADYQTWRALLHKFYEPGIAVAHFATVAGALK
                     "
     gene            complement(1223..2068)
                     /gene="ugpE"
                     /locus_tag="VKJ77_20245"
     CDS             complement(1223..2068)
                     /gene="ugpE"
                     /locus_tag="VKJ77_20245"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015794 - glycerol-3-phosphate
                     transmembrane transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HMC47660.1"
                     /translation="MIENRRGFDLFCHAVLIVGVVLVVFPVYIAFCAATMSEAEVFSV
                     PLSLVPSTHLFENVVHIWTHGSGNAAAPFGHMLLNSLVMALVISIGKIAISMLSAYAI
                     VFFRFPFKNLAFWLIFITLMLPVEVRIFPTVQVVSSMHLSNTYAGLTLPLIASATATF
                     LFRQFFMTLPDELMEAARIDGAGALRFLWDVVLPLSKTNIAALFVITFIYGWNQYLWP
                     ILITSDQSLQTAVVGIKSMIATGDTATEWHLVMTATLLAMLPPLAVVLTMQRWFVRGL
                     VDSEK"
     gene            complement(2065..2949)
                     /gene="ugpA"
                     /locus_tag="VKJ77_20250"
     CDS             complement(2065..2949)
                     /gene="ugpA"
                     /locus_tag="VKJ77_20250"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011350698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpA"
                     /protein_id="HMC47661.1"
                     /translation="MEKRSRFNTSLLPYLLVAPQLAITALFFLWPAGEALWQATQTQD
                     AFGTSSEFVGLANFKQIFTDPLYLSSFNTTIIFCTLVTVSGLVISLLLAACADRVTRG
                     RKIYQTLLIWPYAVAPAIAAVLWSFLFNPSIGLVTYALAKYGIVWNHALNGSQAMFLV
                     VLASVWKQVSYNFLFFYAGLQAIPRSLIEAAAIDGAGPVRRFFGIALPLLSPTSFFLL
                     TVNVVYAFFDTFPVIDAATGGGPAQSTKTLIYKIFAEGFQGLDIGSSGAQSVVLMVIV
                     VALTVVQFRFIERRVQYS"
     gene            complement(2957..4279)
                     /gene="ugpB"
                     /locus_tag="VKJ77_20255"
     CDS             complement(2957..4279)
                     /gene="ugpB"
                     /locus_tag="VKJ77_20255"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     substrate-binding protein UgpB"
                     /protein_id="HMC47662.1"
                     /translation="MSRRKLLVSAFSIAAVFAFGASQAQAATEIQFWHAMESALGERV
                     NDIANDFNASQSDYKIVPVFKGSYDQTLAAGIAAYRSGNAPAILQVYEVGTATMIQAK
                     KAVIPVSDVFKQAGVPLDEKAFVPTIASYYTDSKTGHLISMPFNSSTPVLYYNKDAFK
                     KAGIDPTQPPKTWDELEADAKKLKAAGMCGYSSGWQSWIQLENYSAWHGLPFASENNG
                     FDGTNAVLEFNKPLQIAHIQRLQNMAKDGTFTYVGRKDEAVSKFYSGDCGIVTNSSGS
                     LANIKKYAKFNFGTGMMPYDQSVKGAPQNAIIGGASLWVLSGKDPATYKGVAKFLAYL
                     TSPAVAAKWHQDTGYLPVTTAAYELTQKQGFYDKNPGADTAIKQMLNKPPLPFTKGLR
                     LGNMPQIRTIVDEELEQVWAEKKTPKDALDSAASRGDDLLRRFEKAGN"
     gene            complement(4355..>5282)
                     /locus_tag="VKJ77_20260"
     CDS             complement(4355..>5282)
                     /locus_tag="VKJ77_20260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016793 - triphosphoric monoester
                     hydrolase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HMC47663.1"
                     /translation="RVNEDLVEAISLAHDLGHTPFGHAGQDALNECMRDHGGFEHNLQ
                     SLVVVDELEEHYGAFDGLNLCYETREGILKHCSHENALKLGALGERFLNRKQPSIEAQ
                     IANVADEIAYNNHDVDDGLRSGLITLDQLADVALWQTHYEAARGEYPNIEGRRLIHET
                     IRRIINTLIVDLIESTSESLARLNPQSVDDVRDAPALVTHSETVAAQATELKRFLYKN
                     LYRHYQVMRMANKAGRVVSGLFKAFNDDPRLLPPAYQARGPIAEESANDPRGSETASG
                     STQARLIAHYIAGMTDRYALKEYGRLFVIDDN"
BASE COUNT         1054 a         1617 c         1551 g         1060 t
ORIGIN      
        1 gcgcgctctg ctgctccggc agcatgtgtt ccggccgaat gcccaacacc cactcgcggc
       61 ccttcagatc ctgctgcagc gactgcatgc ccgcgagcgg caggcgtggc ccgttacccg
      121 cgacatcgaa gcccaaaccg tcgtccgaga cacggccttc cagcaggttc atggccggtg
      181 agccgataaa actcgccacg aacaccgtcg ccggccgctc gtagacttcg gtcggcggcc
      241 cgatctgctc ggcccggccg cgattcatca cgatcacgcg ctgcgcgagc gtcattgcct
      301 cgatctggtc gtgcgtgacg tacaggctcg tggttgcaag acgcgcgtgc agccgctgga
      361 tttccaggcg catttggacg cgcagcttgg cgtcgaggtt ggacagcggt tcgtcgaaca
      421 ggaacacggc cggttcgcgc acgatcgaac ggcccattgc cacgcgttgc cgctggccgc
      481 cggacaactc gcgcggcttg cgtgcgagca acggttcgag ttcgaggatc ttcgcggcat
      541 tctgcacgcg ccggtcgatt tccgatttgc tgacaccggc gatcttcagc gcgtacgcca
      601 tgttctgcgc gacgctcatg tgcggataca gcgcgtagtt ctggaatacc atcgcgatgt
      661 cccggtcctt cggctcgagc gtattcacca ctttctcgcc gatggaaatc gtcccttcgg
      721 atacgctttc cagccccgcg accatccgca gcaatgtcga tttcccgcaa ccggacgggc
      781 cgaccatcac gacaaattcg ccgtcggtca cctccacgtc aatgccgtgc aggacgaact
      841 gcttgctgtc gtaggttttc ttgacgcctt gaaggctcag tgcagccatc gacccgcctt
      901 cacttaaggg cgcccgcgac cgtcgcgaag tgcgcgaccg cgatgcccgg ttcatagaat
      961 ttatgcaaca acgcgcgcca cgtctggtag tcagcggagt tgcggaaacc ttcctgatgc
     1021 gccgcgaccg tttcccagcg cacgagcagc acgtaatgcg aaccgttgtc cgcgtcagcg
     1081 ccacgcacca gttcgtgcga gagatagccc ggttgcgccg agatgatttt ttcggcttca
     1141 gcgaacgccg tttcgaacgc ggcctcttcg cccgccttca ccggcaattg agcaacttca
     1201 aggatcattg aacgaacctc cgttattttt cggaatcgac gagaccacgc acgaaccagc
     1261 gctgcatcgt caacacaacc gcgagcggcg gcaacatggc cagcagcgtt gcggtcatga
     1321 ccagatgcca ttcggtggcg gtgtcgccgg tcgcgatcat gctcttgatg ccgaccaccg
     1381 cggtttgcag cgactggtcg ctggtgatca ggatcggcca caaatactgg ttccagccat
     1441 agatgaacgt gatcacgaac agcgcggcaa tgttcgtctt cgacagcggc agcaccacgt
     1501 cccacaagaa ccgcaatgcc ccggcgccgt cgatgcgcgc cgcctccatc agctcatcgg
     1561 gcagcgtcat gaagaactgg cggaacagga acgtcgccgt cgccgatgca atcagcggca
     1621 acgtcaagcc ggcgtacgtg ttgctgagat gcatcgatga aacgacctgg accgtcggaa
     1681 aaatgcgcac ttccaccggc agcatcagcg tgatgaagat tagccagaag gccaggtttt
     1741 taaacgggaa gcggaagaac acaatggcgt aggccgacaa catggagata gcgatcttgc
     1801 cgatcgaaat cacgagcgcc atgaccaggc tgttcagcag catgtggccg aacggcgccg
     1861 ccgcgttgcc gctgccgtgc gtccagatat gcactacgtt ctcgaacaag tgcgtgctcg
     1921 gaaccagcga aagcggcacg ctgaatactt ccgcctcgct catggtggcg gcgcaaaaag
     1981 cgatgtacac cggaaacacg accagcacca cgcccacgat cagcaccgcg tggcaaaaca
     2041 ggtcaaaacc gcgacggttc tcgatcatga gtactgcacc cgacgttcaa taaagcggaa
     2101 ttgcacgaca gtcagcgcca ccacgatcac catcagcacg accgactgcg cgccggaact
     2161 gccaatatcg agaccctgga agccttcggc gaagatcttg tagatgagcg tctttgtgga
     2221 ctgcgcagga ccgccgccgg tggctgcatc gatgaccggg aaggtatcga agaaggcgta
     2281 gaccacgttc acggtcagca ggaagaaact cgtcggcgag agcaacggca gcgcgatccc
     2341 gaagaaccgc cgcacgggcc cggcgccgtc aatggccgcc gcctcgatca acgaccgcgg
     2401 gattgcctgc agcccggcgt agaagaacag gaagttatag ctgacctgct tccacaccga
     2461 tgccagcacc accaggaaca tggcctgtga accgttcagc gcgtggttcc agacaatgcc
     2521 gtatttcgcg agcgcatagg tcacgaggcc gatgctcgga ttgaacagga acgaccacag
     2581 cacagcggca atagccggcg cgaccgcgta cggccagatc aaaagcgtct gataaatctt
     2641 cctgcctcta gtcacccgat cggcgcacgc ggccagcagc agcgagatca ccaggcccga
     2701 caccgtgaca agcgtgcaga agataatggt cgtgttgaat gacgagaggt aaagcggatc
     2761 ggtgaagatc tgcttgaaat tcgccagtcc gacaaactcg ctcgatgtac cgaacgcgtc
     2821 ctgggtctgc gtggcctgcc acagcgcctc gccggccggc cacagaaaaa agagcgcggt
     2881 gatggcgagt tgcggcgcga ccagcagata aggcagcagg ctcgtattga accgcgatcg
     2941 tttttccatg gcgagtttag ttcccagcct tttcgaagcg gcgcagcagg tcgtcgccac
     3001 gcgatgccgc cgaatcaagt gcgtccttcg gcgttttctt ctccgcccag acctgctcga
     3061 gttcttcgtc gacaatcgtt cggatctgcg gcatgttgcc cagacgcaag cccttcgtga
     3121 acggcagcgg cggcttgttc agcatctgtt tgatcgcggt atcggcgccg ggattcttgt
     3181 cgtagaaacc ctgcttttgc gtcagctcgt aagcggcggt cgtgactggc agataacccg
     3241 tgtcctgatg ccatttagcc gcaactgccg gcgaagtcag gtacgccagg aacttggcga
     3301 cacccttgta cgtggccgga tccttcccgg acagcaccca aagactcgcg ccgccgataa
     3361 tcgcgttttg cggtgcgccc ttcacgctct ggtcgtacgg catcatgccc gtgccaaaat
     3421 tgaatttcgc gtacttcttg atgttggcaa gcgaccccga cgagttggtc acgatgccgc
     3481 aatcgccgct atagaacttc gataccgctt cgtccttccg gccgacatac gtgaacgtgc
     3541 cgtccttcgc catattctgc aggcgctgaa tgtgcgcgat ctgcagcggc ttgttgaatt
     3601 cgagcacagc gttggtgccg tcgaaaccat tattctccga tgcgaacggc aggccgtgcc
     3661 atgcgctgta gttctccaac tgaatccagc tctgccagcc cgacgaatag ccgcacatgc
     3721 cggccgcctt cagctttttt gcatcggctt cgagttcgtc ccaggttttc ggcggttggg
     3781 tcggatcgat accggctttc ttgaacgcgt ccttgttgta atagaggacg ggcgtcgagc
     3841 tgttgaacgg catcgagatc aggtggccgg tcttcgagtc ggtgtaataa cttgcgatgg
     3901 tcggaacgaa tgccttttcg tcgagcggaa cgccggcttg cttgaagaca tcagaaacgg
     3961 ggatgacggc cttcttggcc tggatcatcg tggcggtgcc cacttcatac acttgcagga
     4021 tggccggcgc gttgccgctg cgatacgccg caatacccgc ggccagcgtc tggtcgtagc
     4081 tgcccttgaa gaccggcacg atcttgtaat cgctttgcga cgcgttgaag tcgtttgcga
     4141 tgtcgttcac gcgctcgccg agcgcggatt ccatggcgtg ccagaattga atttccgtgg
     4201 cggcctgtgc ctgactggcg ccaaaggcaa atacagcggc aatggaaaag gcgctgacca
     4261 acaacttgcg acgactcatg agtaacctct ccttgaaccc cggtggagtt tttttgattg
     4321 ggacaaacgc ggaacgcgtc tggaacgcgg cattctaatt gtcgtctatg acgaatagac
     4381 gtccatattc ttttaatgcg tatcgatccg tcatgcccgc gatgtaatgc gcgatcaggc
     4441 gagcctgagt gcttccggaa gcggtctcgc tgccgcgggg gtcgttggca gactcctccg
     4501 cgatcggtcc gcgcgcctga taggccggcg gcagcaggcg cgggtcgtcg ttgaacgcct
     4561 tgaaaaggcc gctcaccacg cgcccggctt tgttagccat ccgcatgacc tggtaatggc
     4621 ggtataggtt cttgtaaaga aagcgcttga gttcggtagc ctgggcggca actgtctcgc
     4681 tgtgcgtgac cagcgccggg gcgtcgcgca cgtcatcgac cgattgcgga ttcaaccgcg
     4741 cgaggctctc gctcgtcgac tcgatcagat ccacgatcaa cgtattgatg atccggcgga
     4801 tggtctcgtg aatcagcctt cgtccttcaa tattcggata ttcgccgcgc gccgcttcgt
     4861 agtgcgtctg ccacagcgcg acatcggcca gttggtcgag cgtgatcagg cccgagcgca
     4921 ggccgtcgtc gacgtcatga ttgttgtagg cgatttcgtc ggctacgttc gcgatctggg
     4981 cttctatcga cggctgcttg cgattcagaa agcgctcgcc gagcgcgccg agcttcagcg
     5041 cgttttcgtg cgagcagtgt ttaagaatgc cctcgcgggt ttcgtagcag agattaaggc
     5101 cgtcgaacgc gccgtagtgt tcttcgagtt catcgaccac cacaagactc tgcaggttgt
     5161 gctcgaagcc gccgtgatcg cgcatgcatt cattcagcgc atcctgtccg gcatggccga
     5221 acggcgtatg gccaagatcg tgcgccagcg aaattgcttc gaccaggtct tcgttcacgc
     5281 gc
//
LOCUS       DATGBK010001454         3551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_225807, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001454 DATGBK010000000
VERSION     DATGBK010001454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3551
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225807"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            123..1415
                     /locus_tag="VKJ77_20265"
     CDS             123..1415
                     /locus_tag="VKJ77_20265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006483596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HMC47664.1"
                     /translation="MSDSPPTAYQAIDTSALYKRAEADRVSPSLYNDPAIFEAELERI
                     FYKTWIWVAHESELPKPGDFRTTTIGRQPVIVVRDKTGEINVLENRCRHRGATVCEQH
                     KGNARGFTCPYHSWTYGLDGALRALPYGDGYEGIVDKAELPLKSLRVGIYQGLIFASF
                     DQSIEPLEDFLGGAKPWIDLFMKQGAGFPVKANGEHKFKFKGNWKIQLENTTDLYHFP
                     VVHKSWMKTIDDETAAAITSFMTSDKAFCRSLGNGHSLAVLVPEIVDLDEDNGAPIPV
                     RYEALAESLAKDYPPDQVRRIVRSLMGVGFNLNLFPNLALSMAFFRVLRPISAEETEI
                     RHVALGMDGGPEEANRARLRVHEHFQGPFGFGSPDDAEAWERVQRGSHAGPDVPILVN
                     RGLNRETTAANGEKTAHATDETGMRAAYAKWRELMEQQ"
     gene            1417..1914
                     /locus_tag="VKJ77_20270"
     CDS             1417..1914
                     /locus_tag="VKJ77_20270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012338648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic-ring-hydroxylating dioxygenase subunit
                     beta"
                     /protein_id="HMC47665.1"
                     /translation="MDDTNALLMQPVFAKAVQFIWREAEILDRKDYRAWLELWSPNGF
                     YVVPIDPLATDFAATLNYAYDDHHMRELRVQRLSSGYSPSVTDAARTVRTVSRFTMSS
                     DSADRVDVRSAQVVVAYKRGVTTLFAADVEHRIDLSDGEPRIVQKVVRLIDSTDALNA
                     IGFLL"
     gene            1921..2307
                     /locus_tag="VKJ77_20275"
     CDS             1921..2307
                     /locus_tag="VKJ77_20275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011694648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HMC47666.1"
                     /translation="MPTLEVFLPEGHTPVIKAGLIAALTTATVDSIGAPAESVRLLIN
                     ELPGTNFGIGGKTAADGAPSSLPVILAILIAGRTEQQKVALIAALSRTCAEILDAPLA
                     AIRVMIKDIPNTDFGIAGTTAKALGR"
     gene            2357..2722
                     /locus_tag="VKJ77_20280"
     CDS             2357..2722
                     /locus_tag="VKJ77_20280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47667.1"
                     /translation="MVDNVWLPLRVLFCCGVTQNFFDLPREQIGTVWQAYGVMLKSIE
                     AMEGVKVLGIMDDDRLVVGQADGAPWTFYIMADVDTFDTAAAVCNLYRTTPVGEYNLW
                     RYGKIEARIGRALTVPNPT"
     gene            2719..3276
                     /locus_tag="VKJ77_20285"
     CDS             2719..3276
                     /locus_tag="VKJ77_20285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012732987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HMC47668.1"
                     /translation="MNKPSNELMNETLADLTARLAVLEAERAVRRTMMRYMALCDVPS
                     GGQPSETLADLFSKDAIWQGIGPEYAAKFGALAGREAIVAMLARYLPPTPHFSVNTHF
                     MASETIDVDAAATHATGRWIMLQASGYVEGGAELVSARLEVDFVPTADGRRWLIGHFR
                     TQRLFDAPWQVHPSSTGSFGAVGRS"
     gene            3280..>3551
                     /locus_tag="VKJ77_20290"
     CDS             3280..>3551
                     /locus_tag="VKJ77_20290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HMC47669.1"
                     /translation="MNEFISEFTLGDADGPSIALKDTIDVAGYPTTAASRALRDAPPA
                     QSHAEVVDRLLVQGWRVVGKTNMHELAFGMTGINDHTGTPENPQDET"
BASE COUNT          722 a         1070 c         1094 g          665 t
ORIGIN      
        1 catgatattt gccgaattga tggacctacc gattttagat gaatttgacc tatggacgcc
       61 agcggccgac acttcaatcc ataactagcg gcatggtcct tcccacttta ctcaggtcat
      121 cgatgagcga ttccccccca acggcctatc aggccatcga cacgagcgcg ctctacaagc
      181 gtgcggaagc tgaccgcgtt tcgccgtcgc tttataacga tccggcgatt ttcgaagcgg
      241 aactcgaacg catcttctac aagacgtgga tctgggttgc gcatgaaagc gagctgccga
      301 aaccgggcga ctttcgtacc acgacaatcg ggcgccaacc ggtgatcgtg gtccgcgaca
      361 agactggcga aatcaatgtg ctcgagaacc gttgccgcca tcgcggcgcg accgtctgcg
      421 agcagcacaa aggcaacgcg cgcggcttta cctgccctta tcacagctgg acgtacggac
      481 tcgacggcgc actgcgcgcg ttgccgtatg gcgatggtta cgaaggtatt gtcgataagg
      541 ccgaactccc gctgaagagc ctgcgcgtcg gcatctatca ggggctgatt ttcgcgagct
      601 tcgatcagtc gattgaaccg ctggaggatt ttctcggcgg agcgaaaccg tggatcgacc
      661 tgttcatgaa acagggcgcg ggatttccgg tcaaggccaa cggcgaacac aagttcaagt
      721 tcaagggcaa ctggaaaatc cagctcgaaa acacgaccga cctgtatcac ttcccggttg
      781 tccacaagtc gtggatgaag accatcgacg acgaaaccgc tgccgcgatc accagcttca
      841 tgaccagcga caaagcgttt tgccgctcgt tgggcaacgg ccatagcctt gccgttctgg
      901 tccctgagat cgttgacctg gacgaagaca acggtgcccc gatcccggtg cgctacgagg
      961 ccttggcaga gtctttggcg aaggactatc cgccggatca ggtgaggcga atcgttcgct
     1021 cgctgatggg cgtgggcttc aacctgaacc tgttccccaa cctggcgcta tcgatggcat
     1081 ttttccgcgt gctgcggccg atttccgccg aagaaaccga gatccgtcat gtggcgctcg
     1141 gcatggacgg cggtcccgag gaagcgaacc gcgcccgctt gcgcgtgcat gaacatttcc
     1201 agggtccatt cggatttggc agccccgacg acgccgaagc gtgggagcgt gtgcagcgcg
     1261 gctctcatgc cggacccgac gtaccgattc tcgtcaatcg cggattgaac cgggaaacta
     1321 cggcggcgaa cggcgagaaa acggcgcatg ccaccgatga aaccggcatg cgcgccgcgt
     1381 acgcgaaatg gcgcgagctg atggagcagc aataacatgg acgataccaa cgccctcctc
     1441 atgcaacccg tgtttgcgaa agcagtgcag ttcatctggc gcgaagccga gattctggat
     1501 cgaaaggatt atcgtgcgtg gcttgagctg tggtcgccca acggattcta cgtggtgccc
     1561 atcgatccgc ttgcaaccga cttcgcggca acgctgaact acgcctatga cgatcaccac
     1621 atgcgcgagt tgcgcgtgca gcggctgagt tcaggttatt caccaagcgt caccgacgcc
     1681 gcgcgcacgg tacgcaccgt gtcgcgcttc acgatgtcga gcgactcggc ggacagggtt
     1741 gacgtacgca gcgcgcaggt cgtcgtcgcg tacaagcgcg gtgtcactac gctgttcgcg
     1801 gcggacgtgg agcatcgcat cgatctgtcc gacggtgaac cgcgcattgt gcaaaaggtc
     1861 gtgaggctga ttgattccac cgacgcgctc aacgcgatcg gcttcctgct ctagttcgcc
     1921 atgccaacgc tcgaagtatt tcttcccgaa ggtcacacgc cggtcatcaa ggctgggttg
     1981 atcgctgcgc tgacgaccgc gaccgtcgac tcgatcggtg cgccggctga atcggttcgc
     2041 ctgctgatca acgagttgcc cggcacgaac ttcggcatag gaggcaagac cgcggcggac
     2101 ggtgcgccat cttcgctgcc cgtgatcctc gccattctga ttgcggggcg cacggagcag
     2161 cagaaggtgg cgttgatcgc cgcattgagc cgcacgtgtg ccgagatact ggatgcgccg
     2221 ctcgcggcga tccgcgtgat gatcaaggac ataccgaata ccgacttcgg cattgcgggc
     2281 acgacagcga aggcacttgg gcgctgaccg cgctcgctac actgacggtc cgataaaatt
     2341 tcaggagaga tccaccatgg tggacaacgt atggttgcct ctgcgcgtat tgttttgctg
     2401 cggcgtgacc cagaatttct tcgaccttcc gcgtgagcag atcggcacgg tctggcaggc
     2461 gtacggcgtg atgctgaaga gcatcgaggc tatggaaggg gtcaaggtcc tcggcatcat
     2521 ggatgacgac cggctggtcg tgggtcaggc cgacggcgcg ccgtggacct tctacatcat
     2581 ggccgacgtc gacaccttcg acacggcggc cgccgtctgc aacctgtacc ggaccacccc
     2641 ggtgggcgaa tacaacctgt ggcgctacgg caagatcgaa gcccgcatag gccgggcact
     2701 gaccgtgccg aacccgacat gaacaaaccg tcgaacgagc taatgaacga gacgctggcc
     2761 gatctaacag cccggctcgc cgtgctcgaa gccgagcgcg cggtacgccg gaccatgatg
     2821 cgatacatgg cgctctgcga cgttccatcg ggtggccagc cgtccgagac gctcgcggat
     2881 ctatttagca aagatgccat atggcaaggc atcggcccgg agtacgcagc gaagttcggc
     2941 gcgcttgccg gccgggaagc gattgtcgcg atgcttgcgc gctacctgcc gcccacgccg
     3001 catttcagtg tgaacacgca cttcatggcg tcggagacta tcgatgtcga cgccgccgcg
     3061 acgcatgcca cagggcgctg gatcatgctg caggcatcgg gttatgtgga aggcggggcc
     3121 gagctggtat cggcgagact tgaagttgat ttcgtaccga ccgccgatgg ccggcgctgg
     3181 ctcatcgggc attttcgtac gcagcgcctg ttcgatgcgc cctggcaggt tcatccctct
     3241 tccaccggca gcttcggcgc cgtcgggcgc tcttaggcaa tgaacgaatt catcagcgaa
     3301 tttacgcttg gcgacgccga cggtccgagc attgcgctca aggacacgat cgacgtcgcg
     3361 ggttacccga ccacggcggc aagccgcgcg ttgcgggatg caccgccggc gcaaagtcat
     3421 gcggaagtgg tggaccgcct actcgtgcaa ggatggcgtg tggtcggcaa gaccaacatg
     3481 cacgagctgg cgttcggcat gaccgggatc aacgaccaca ccggaacgcc cgagaatccg
     3541 caggacgaga c
//
LOCUS       DATGBK010001455         1886 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_109778, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001455 DATGBK010000000
VERSION     DATGBK010001455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109778"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1886
                     /locus_tag="VKJ77_20295"
     CDS             <1..>1886
                     /locus_tag="VKJ77_20295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015866522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HMC47670.1"
                     /translation="PPERLAYTIGDSGISLLLTQHAERERLNRHLPPGDACTVLELDE
                     LDTSGESQLRPDVKIHPENLAYVIYTSGSTGRPKGAANRHNALFNRLAWMQAAYHLDA
                     TDTVLQKTPFSFDVSVWEFFWPLMFGARLAVAGPGDHRDPAKLVELIDRFKVTTLHFV
                     PPMLQAFIASLDGDSAVCGSLRQIICSGEALPATLQDRALQRLSHIQLHNLYGPTEAA
                     IDVTHWTCQAGDPVVPIGRPIANVSTHVLDQSMNRLPMGVAGELYLGSAGLARGYLNR
                     PGLTAERFVPDPFTDGGRLYRTGDLARWREDGALDYLGRLDHQVKIRGFRIEPGEIEA
                     VLQTLPGVDEAVVIAQDGPGGKRLVAYVTARPGHALQRDVLAASLHSVLPEYMVPSAW
                     VELARLPLSPNGKVDRRALPLPDQQERAWEAPQGDVEPMLARIWQEVLRVERVGRDDN
                     FFELGGDSILSLLIVERVRLAGWKVTPRQLFERQTVVQLAAVAEPVVATAVATDAVMQ
                     DTTKAFLPMQTWFLDLPMESRHHWNQAVLLTSSEPLDTALLERALHALVQHHDALRMR
                     LTQDAAGGWSLGSEQLSTDLLWVREAATSADITALCNQAQRSLDLGHGPLLRALAINF
                     ADGS"
BASE COUNT          337 a          543 c          615 g          391 t
ORIGIN      
        1 ccgcccgagc ggctcgccta cacgattggc gatagcggca taagtctgtt gcttacgcag
       61 cacgctgagc gtgaacgcct gaaccggcat ctgcctccgg gcgatgcatg cacggtgctc
      121 gaactcgacg agctggatac atcgggtgaa tcgcagcttc gtccggacgt caagatccac
      181 ccggaaaacc tggcctacgt gatttatacg tcgggttcga caggacgtcc gaaaggcgcg
      241 gcgaaccgac acaacgcatt gtttaaccgg ctagcctgga tgcaggctgc ataccatctc
      301 gacgccaccg ataccgttct gcagaagacc ccgttcagct tcgatgtgtc ggtttgggag
      361 ttcttctggc cactcatgtt cggcgcgcgt ctggcggtgg cggggccggg tgaccatcgg
      421 gaccctgcga agctggttga attgatcgac cgcttcaagg tgaccacgct gcatttcgtg
      481 ccaccgatgt tgcaagcctt catcgcttca ctcgatggcg atagcgccgt ttgtgggagc
      541 ctgcgccaga tcatttgcag cggcgaagcg ttgccggcga cattgcagga tcgtgcgctg
      601 caacgtctgt cgcatatcca attgcataac ctgtacggcc cgaccgaagc agccatcgac
      661 gtcacgcact ggacttgcca ggcaggcgat ccggtcgtgc caatcggccg gccgattgcg
      721 aacgtcagca cgcatgtgct cgatcagtcg atgaatcgtt tgcctatggg tgtcgcgggc
      781 gaactctatc tgggcagtgc gggactcgcg cgtggttacc tcaatcgacc tgggctgacg
      841 gccgagcgtt ttgtgcctga tccgttcacg gatggtgggc ggctttatcg cacgggcgac
      901 cttgcgcgct ggcgcgagga tggagcactc gactatctcg gacggctcga tcatcaggtc
      961 aagatccgcg gctttcgcat tgagccgggt gagatcgaag cggtattgca gaccttgccg
     1021 ggcgtcgatg aagcggtagt cattgcgcag gatgggccgg gaggtaaacg gctggtagcg
     1081 tacgtgacgg cgcgtccggg tcatgcgttg cagcgtgacg tgctggctgc gagccttcac
     1141 agcgtcctgc ccgaatacat ggtgccgtcc gcctgggtcg agctcgcgcg cctgccgctg
     1201 tcgccgaatg gcaaggtgga tcgccgggcg ctgcctttgc ctgatcagca ggaacgggca
     1261 tgggaagcgc cgcaaggcga tgtcgaaccg atgctggcgc gtatctggca ggaggtgttg
     1321 cgcgtcgaac gcgttggccg cgacgataac ttcttcgaac tgggcggcga ttcaattctg
     1381 agtctgctga ttgtggagcg cgtacggctg gccgggtgga aggtaactcc gcggcagttg
     1441 ttcgagcgtc agaccgtggt ccagcttgct gctgtagctg agccggttgt tgcaaccgct
     1501 gtcgccactg acgcggtcat gcaggacacc accaaggcat ttttgccgat gcagacatgg
     1561 ttccttgacc tgccgatgga gtcgcggcat cactggaatc aggcagtgct tctgacgagc
     1621 agcgaaccgt tggacacggc gctgctcgag cgcgcattgc atgcgttggt gcagcaccac
     1681 gacgcgctgc gcatgcgcct aacgcaagac gctgccggtg gatggtccct gggtagtgag
     1741 caattgtcga ctgacttgct atgggtacgc gaggcggcta catccgctga catcaccgcg
     1801 ctttgtaatc aagctcaacg cagtcttgat ctcggccacg gcccgctgct gagagcgctg
     1861 gcgataaatt tcgctgacgg cagctg
//
LOCUS       DATGBK010001456         2966 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_317940, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001456 DATGBK010000000
VERSION     DATGBK010001456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317940"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VKJ77_20300"
     CDS             <1..392
                     /locus_tag="VKJ77_20300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HMC47671.1"
                     /translation="LRAGVEQVTALQRDLVALLPDYLGSNVEPGFIKDGVLALFAGHN
                     ALAARLRHIEPRLLVDLQQRGWAVNALKIRVRPQAMKDVVPPKQARMSAAGADALQTL
                     AETLEPSPLQEALAKMAARHHAKAQKK"
     gene            complement(452..1369)
                     /gene="lpxC"
                     /locus_tag="VKJ77_20305"
     CDS             complement(452..1369)
                     /gene="lpxC"
                     /locus_tag="VKJ77_20305"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HMC47672.1"
                     /translation="MLKQRTIKTIVKTVGIGLHSGRKVDLTLRPAPANTGIVFARIDL
                     AVPVDIPVSALAIGDTRLASVLQKDGARVSTIEHLMSACAGLGIDNLYVDVTAEEIPI
                     MDGSAASFVFLIQSAGIEEQNAAKKFIKVTKPVEIRDGDKFARLDPYFGFKLKFTIDF
                     RHPAVDKTGQALEVDFANTSYVRDIARARTFGFAHEVEMMRELGLARGGSMDNAIVLD
                     EYRILNNDGLRYEDEFVKHKMLDAIGDLYVVGHPLLASYAAYKGGHAMNNMLLRELLA
                     HEDAYEIVTFEDKQAAPRGFAFDTQTAFA"
     gene            complement(1737..2240)
                     /locus_tag="VKJ77_20310"
     CDS             complement(1737..2240)
                     /locus_tag="VKJ77_20310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HMC47673.1"
                     /translation="MIKTGETLPDERLFEYIDVATEGCAVGPNGFSVRERTAGKRVVI
                     FGLPGAFTPTCSARHVPGFIDNAEKLAAAGIDEIWCVSVNDAFVMSAWGRDLQTSGKV
                     KMIADGSARFTRALGLEQDLSERGMGIRSQRYAMVVEDGVVKTLNLEAPGKFEVSSAE
                     SVLATLG"
     gene            complement(2518..>2966)
                     /locus_tag="VKJ77_20315"
     CDS             complement(2518..>2966)
                     /locus_tag="VKJ77_20315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HMC47674.1"
                     /translation="GVDLSGARGVLVNITSSRSLRLSETREVMNTIKSYAAEDATVIF
                     GAVYDDAMGDALRVTVVATGLGRAAKKQQAAPMTLLRTGTDNAPIAHAQHSYAPQQSN
                     GTDYGALDTPAVWRSSRETAASHVQALQEKGVDTYDIPAFLRKQAD"
BASE COUNT          657 a          914 c          764 g          631 t
ORIGIN      
        1 cactgcgtgc gggcgtcgag caagtgacgg cgctgcaacg cgacctggtg gcgctgctgc
       61 ctgattatct tggatccaac gtagaaccgg gttttattaa agacggcgta ttggcccttt
      121 tcgccggcca taacgcgctc gccgcccgcc ttcggcacat cgaaccgcgt cttttagtgg
      181 atttgcaaca acgcggctgg gcggtgaatg ctctgaagat tcgcgtacgg ccgcaagcga
      241 tgaaagatgt ggtgccgcct aaacaagcgc gcatgtctgc cgccggagcc gacgcgctgc
      301 aaacgctcgc tgaaactctc gagccgtcac cgcttcagga agcgctcgct aaaatggccg
      361 cgcgccatca cgcgaaagca caaaaaaaat gagcggcgct tgaaagcagc cgctcatttc
      421 attcaaaaca gattcctgct tatgcgacta cttacgcaaa cgccgtctga gtgtcgaaag
      481 cgaaaccgcg cggtgccgct tgtttatcct cgaacgtgac gatttcgtac gcgtcttcat
      541 gcgccagtaa ttcacgcagc aacatgttat tcattgcgtg accgcccttg taggcggcgt
      601 acgacgccag caacggatga ccgaccacat acaggtcgcc aatggcatcc agcatcttgt
      661 gcttcacaaa ctcatcttcg taacgcaaac cgtcgttatt cagaatccgg tattcgtcca
      721 gcacgatggc gttatccata ctgccgccgc gtgccaagcc gagttcacgc atcatttcca
      781 cttcatgcgc aaaaccgaac gtccgtgcgc gggcaatatc ccggacatag gacgtattcg
      841 caaaatccac ttcaagcgcc tgtccggttt tatcgacagc cggatggcgg aaatcaatgg
      901 tgaacttcag tttgaagccg aaatacggat cgagacgcgc gaatttatcg ccgtcgcgga
      961 tttcaaccgg cttcgtcacc ttgataaatt tctttgccgc gttctgctct tcaatgcccg
     1021 ccgattgaat cagaaacacg aacgaagcag cgctgccatc cataatcggg atttcttcag
     1081 ccgtgacatc gacatacaaa ttgtcgatac ccagtccagc acatgccgac atcaaatgtt
     1141 cgatggtcga cacgcgcgcg ccgtctttct gcaaaaccga agccagacgc gtgtcgccga
     1201 tagccaaggc cgacaccgga atgtccaccg gcacggccag gtcaatacgc gcaaagacga
     1261 taccggtatt ggccggcgcg gggcgaagcg tcaaatccac cttacggccc gaatgcaggc
     1321 cgattccgac ggttttgacg atggttttaa tggttcgctg cttcagcatg atttttttcg
     1381 cttcgattgt gactctcgat tgagagaatc aatcgtgaat ttgtattcaa tagcgacgag
     1441 tatactctaa tcgcctcacg tcgtccgagg aggagcgttt caacttgttt ctccaagtta
     1501 ccgggtaatt tcggcacgcc tgatgctgtg ccagcgggaa gcgaggaggg tcgggccgat
     1561 gaccggaatg gaggcattcc cggacatcgg caccgcgtta cggctttgtt aagactttgt
     1621 tgcagcgcat ttcaagagag cgggcgaacg tcattttatg tggcacggat gcaacacaac
     1681 gctcgcctta tcggcctgaa acaagcccga acatcaactc aacatcgctt gaaacatcag
     1741 cctaacgtcg ccagtacgct ctcagcgctg ctgacttcaa acttgccggg tgcttcgaga
     1801 ttcagcgtct tgaccacgcc gtcctcgacc accattgcgt aacgctggga gcgaattccc
     1861 atgccacgct ccgacaaatc ctgctccagg ccaagtgctc gggtaaaacg tgcgctgccg
     1921 tcggcgatca tcttcacctt gcccgaggtt tgaagatcgc ggccccacgc gctcatcacg
     1981 aacgcatcgt tgacggagac acaccagatt tcatcgatac ccgcagcagc cagcttctcc
     2041 gcgttgtcga taaaacctgg cacgtgccgg gcggaacaag tgggcgtgaa cgcgcccggc
     2101 aatccgaaga tcaccacgcg cttgcccgcc gtccgctccc gcaccgagaa accgtttggt
     2161 cccacggcgc aaccctccgt cgccacgtcg atatattcga agaggcgttc gtcgggcagc
     2221 gtttcacctg tcttgatcat ggatcggcct ttcactgagt cagtgctggt cacgccagcg
     2281 atctaccact tgattcatca cacatcacac gttcaacgtc gtcgcgccgc gtccgctgcc
     2341 acggttcgac agttcgatct catcccaata tagacgatga tgaacgcaat cgaagcggtc
     2401 agtcagccac agtccagcgt ccagaagacg cggcctgaaa cttgagacag cacaaccttc
     2461 gcctgaagct tttgccaacg ggcgcttaaa taataccaac cgccccggca ataatcatca
     2521 gtctgcctgc ttacgcaaga acgccggaat gtcgtacgta tccacgccct tttcttgcag
     2581 cgcctgtacg tgcgaagccg ccgtttcacg cgacgaacgc cacacagccg gcgtgtccaa
     2641 cgcgccgtaa tccgtgccgt tcgattgctg cggcgcgtag ctatgctgcg cgtgcgcgat
     2701 cggtgcattg tccgtgccgg tgcgcagcag ggtcatcggt gcagcttgtt gcttcttcgc
     2761 tgcacggccg aggcccgttg cgacaactgt cacgcgcaac gcatcgccca tcgcgtcgtc
     2821 atacacagcg ccgaagatca cagtcgcgtc ttctgctgcg tacgacttga tcgtgttcat
     2881 cacttcacgc gtttccgaca agcgcagcga acggctcgac gtaatgttca ccagcacgcc
     2941 gcgtgcaccc gacagatcca cacctt
//
LOCUS       DATGBK010001457         1686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_248534, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001457 DATGBK010000000
VERSION     DATGBK010001457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248534"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1686)
                     /gene="aceE"
                     /locus_tag="VKJ77_20320"
     CDS             complement(<1..>1686)
                     /gene="aceE"
                     /locus_tag="VKJ77_20320"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006478378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HMC47675.1"
                     /translation="KYVANAKDDEDPQETGEWLEALDGVISAVGPDRAHYLIEKQIEF
                     ARVHGEHLPFSANTPYINTIPVAAQAKIPGDQDIEHKIRSYTRWNAIAMVLRAGKETN
                     VGGHIASFASAATLYDVGFNHFWHAPSPEHGGDLVFVQGHSSPGVYSRAFLLGRLKAS
                     QLDNFRQEVGGEGISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFMKYLNARGIIK
                     AGSRKVWAFLGDGETDEPESLGAIGMAGRERLDNLVFVINCNLQRLDGPVRGNGKIIQ
                     ELESEFRGAGWNVIKVVWGSRWDSLFARDKTGALMRRMMEVVDGEYQTYKSESGAYVR
                     EHFFNTPELKAMVAEWSDEDIWNLNRGGHDPHKIYAAYTEASKTKSQPTVILAKTIKG
                     YGMGEAGQAMNITHQQKKLHTDQLMKFRDQFKLPIPDDKIADVPYLTFEEGSKELEYM
                     RARRQELGGYLPARRQKAESLPVPDLSAFEPVLKGTGPGREISTTMAFVRILNILLKD
                     KALGKRIVPIVPDESRTFGMEGLFRQIGIWNQDGQKYVPEDSDQLMFYRESETG"
BASE COUNT          302 a          526 c          493 g          365 t
ORIGIN      
        1 ccggtttccg attcgcgata gaacatcaac tggtcggaat cttccggcac gtacttctgg
       61 ccgtcctgat tccagatacc gatctggcgg aacaaacctt ccataccgaa ggtacgtgat
      121 tcatccggca cgatcggcac gatgcgtttg ccgagcgcct tgtccttcag caggatgttc
      181 aggatccgca cgaacgccat ggtcgtggag atctcgcggc ccggacccgt gcccttcagc
      241 accggctcga atgccgacag atccggcacc ggcaacgatt cggctttctg acggcgcgcc
      301 ggcagataac caccgagttc ctggcggcgt gcgcgcatgt actcgagttc cttcgagcct
      361 tcttcgaacg tcaggtacgg cacgtcggcg atcttgtcgt cgggaatcgg cagcttgaac
      421 tgatcgcgga atttcatcag ctgatcggtg tgcaacttct tctgctgatg ggtgatgttc
      481 attgcctgac cggcttcgcc catgccataa cccttgatgg tcttggcgag gatgacggtc
      541 ggctgacttt tcgtcttcga tgcttccgtg tacgccgcgt agatcttgtg cggatcatgg
      601 ccgccgcgat tcaggttcca gatgtcttcg tcggaccatt ccgccaccat cgccttgagt
      661 tccggcgtgt tgaagaaatg ctcgcgcacg taggcgcccg actccgactt gtaggtctga
      721 tattcgccgt cgacgacttc catcatccgg cgcatcagcg caccggtttt atcgcgggcg
      781 aagagcgagt cccagcggct gccccacacc accttgatca cgttccagcc ggcgccgcgg
      841 aattcgcttt ccagttcctg gatgatcttg ccgttgccgc gaaccgggcc gtcgagacgc
      901 tgcaggttgc agttgatcac gaagacgagg ttgtcgagcc gttcacggcc ggccatgccg
      961 atcgcgccga gcgactccgg ttcgtccgtt tcaccgtcgc caagaaatgc ccagaccttg
     1021 cggcttcctg ccttgatgat gccgcgcgcg ttcaagtact tcatgaaacg cgcctgatag
     1081 atcgccatga tcgggccgag gcccatggac acggtcggga actgccagaa gtccggcatc
     1141 agccacggat gcggatacga cgaaatgcct tcgccgccca cttcctggcg gaagttatcg
     1201 agctgactcg ctttcaggcg gcccagcaag aacgcgcgcg agtacacacc cggcgacgaa
     1261 tggccctgca cgaacaccag gtcgccgcca tgttccgggg acggcgcgtg ccagaaatga
     1321 ttgaaaccga cgtcatacag cgtggccgcc gacgcgaacg aagcaatgtg cccgcccacg
     1381 tttgtttcct tgccggcgcg cagcaccatg gcaatcgcgt tccagcgcgt gtacgagcgg
     1441 atcttgtgtt cgatgtcctg gtcgccggga atcttcgcct gggcggcgac cggaatcgtg
     1501 ttgatgtacg gggtgttcgc ggaaaacggc agatgttcgc catgcacgcg cgcgaattca
     1561 atctgcttct cgatcaggta gtgggcacga tccgggccta ctgccgaaat cacgccgtcg
     1621 agggcttcca gccactcgcc tgtttcctgg ggatcttcgt cgtccttggc gttggcgaca
     1681 tatttc
//
LOCUS       DATGBK010001458         8216 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_248544, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001458 DATGBK010000000
VERSION     DATGBK010001458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 8216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8216
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248544"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1537)
                     /locus_tag="VKJ77_20325"
     CDS             complement(<1..1537)
                     /locus_tag="VKJ77_20325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic peptide export ABC transporter"
                     /protein_id="HMC47676.1"
                     /translation="MSLFWYLVRNSRWVLAVAVVASLVSGFGNAALIALINQALGASN
                     TKLVELGWQFLIVGVVVLGTRTLSQTLFMQLGQRAKATLRMRTIRRIAEASYQHLEKQ
                     GASKALTVLTQDLDTIVVLFLSLPALAMHGAVIAGCLAYLGYLSWQILLFAVLTIFIG
                     SLGFHIANTKALFHLRGSRRKEDDLVKHFRALFDGAKELKLHRERKNAFVTETLETNV
                     EAVRVQRTRGYILYSAAASWGSFILFAFIGITLFVLARTFPVSTHVMSGYAMIFLYMI
                     MPIEGLLSAIPNVSSAKVALERIEQVNAELPLEDTLHETPAKSFDSIVFDKVTHRYFR
                     EKENEVFTLGPIDLTFKPGELIYLIGGNGSGKTTLAKMLVGLYAPEGGQILLNGKPVD
                     EAHRDIYRQHFSVVFNDFYLFDTLFGMKIEGLDAQAKLLLEHLQLDHKVTIKDGVFST
                     TDLSQGQRKRLALLVTYLEDRPFYVFDEWAADQDPTFKEVFYKQLLPELQVKGETIVV
                     ITHD"
     gene            complement(1735..3765)
                     /gene="fhuB"
                     /locus_tag="VKJ77_20330"
     CDS             complement(1735..3765)
                     /gene="fhuB"
                     /locus_tag="VKJ77_20330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HMC47677.1"
                     /translation="MKSVATVPVVPSRRWPLLPVCLVIVLAALLSLHRLEGRLPASLW
                     WQALTAPSPTDLRQLLVHYGDLPRIAVAWLCGAALGLAGVATQQVLRNPLAEPMTLGL
                     FSGSYLALSIATVYAPGLLVSGRDGVALAGGAVALAIVFALAARRGISPLALILGGMI
                     VNLCCGALSFALAISHYDLLSALMIWGGGSLGQHDWSVALALLVRLAPCVVLLLLCMR
                     PMAVFDLGDTVASSLGVSLRMTRGAALFLTLLVTAFVVSAVGVIGFIGLAAPTLARLA
                     GARRLRDRMLWSPLFGAALLWLADQIAQEFARRYGTTIPTGAITTLLGAPLLLVMLRR
                     LRGRPDLNHAPAIQSDPLSSRALAFTTCICVLLLLVVTGLSLGVGRGLAGWHISRPDE
                     ISALLFLRLPHVVAAMGVGVLLALAGGMVQRMTGNPMASPDLLGITAGGALGLTGALF
                     LTASPGLPTFLVWCACGSLITLGALLLFARKSSYAPDTLILAGVTISAVFQAVSTIAV
                     ASDDPRVIVLYNLLAGSTYNVSAGAAGVVAVAALAALCAVPFCRRWLEILPLGAAVSR
                     GLGVNITVARFALLLLSALLTAAATLVIGPLSFIGLMAPHMTRMLGIRRAVPLLFVSA
                     ALGAALMVASDWLGRWVLFPQEMPAGVMATLLGGVYLIVTMFKRNPRDASGS"
     gene            complement(3762..4700)
                     /locus_tag="VKJ77_20335"
     CDS             complement(3762..4700)
                     /locus_tag="VKJ77_20335"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-siderophore ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC47678.1"
                     /translation="MNRRAMLSALLGAGALAATALSDVALAGDAPVAPPRRVVVLDWG
                     LTEMVLSIGVVPVGIANTRDFRRNFTACEVPASVVDLGLMFQPNMELLFALKPDLIVI
                     SPAHVRLQAALERVAPTVTLGRYRGSEAPYSAARAETLQLARLLGCEARAKALLAQAD
                     MALDHARTALDALPGVSDVGGAKGRPLYMVNFIDEAHVRVFGPNSFYGELMTTLGLQN
                     AVHSGAYSTTGFEVLGSVPNATLLYMKPLASSVVNMMKTSPLWHAMPFTNEGRMIGLP
                     RVPPDGCVLSAMLFARVLVDAFEQTSEQTRAAKEHA"
     gene            complement(4697..8182)
                     /locus_tag="VKJ77_20340"
     CDS             complement(4697..8182)
                     /locus_tag="VKJ77_20340"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HMC47679.1"
                     /translation="MGRSQDERAPLPHDLSVSGKVLDGTLTLSVGFSGERYRANTVEG
                     LIDAIRVELERVIEHCTSGNTGVTPSDFELISITQNELDRLPLTLNNVADIYPLSPMQ
                     SGMLFHTLYAPGSSVYLNQLRADIDGLDVARFSAAWAAVTARHDILRTGFVPQGEGWL
                     QWVARSVELPLKHHDLRGRHDLAAALDDMASADLKQGFDVTQAPLQRLALVRVDTHRY
                     HFMWTHHHVLMDGWSVAQLLGEVLRHYSGQSLPAHGGRYRDYIGWLQKHDAQASAVHW
                     REQIKQIGEPTRLATAVASRYERTGTGTVTAGGYGQHTFELDPAATARLVAFARQERV
                     TVNTLVQAAWALLLHRYTNQPTVTFGATLAGRPAGLTGASQLLGLFINTLPVIAQPRA
                     GKRLGDWLRELQLLGMTAQEHAHTPLYEIQRWAGATTQGLFDTVVVFENYPVDTALKD
                     ASPGGLTIDNVRACDETSYALTLGVMLSDTLKLDYRFAHEAFTDRDMAGIAQQTGGLL
                     NAFAGAADRLLADFDVLDGVQRQALLTLGHTDVWGASAEDALPVHTLIEAREKQQTDA
                     LALVAGNLSLSYGEVNERANRLAHRLMREGVGPEVRVGFAVARSVEMIVGLLAVLKAG
                     GAYVPLDPAYPVERLAHMIADSGITLLITQSNLHGRLPAEAGVTRLDLDTLDVSAEPA
                     SNPSVKLAGGNLAYVIYTSGSTGKPKGVAVAHDALSMHCRAIAARYGITPEDRQLHFA
                     SISFDAAAEQWLAPLLSGAAIVLRDDTVWPAQRLAAEIKANKISILDLPPAYINAFAQ
                     EIEPGTVSVRTCIVGGEGWSQSGFEAVKKHLRPERIFNAYGPSETVITSTVWSADGAS
                     EFDSAYAPIGIPVGERTSYVLDAASNLVPQGMAGELYVGGAGLARGYLNRAALTAERF
                     VPDPFDETNRGGRLYRTGDLVRWNSSGQLEFLGRIDHQVKLRGFRIELGEIEAALLAQ
                     PGVRDAVATLHDTIGSARLVAYVSAQTGTVIDGSTLKTALHSVMPDYMVPASIVVLDT
                     LPLTPNGKVDRHALPSPELAVPGHYEPPQGEVETVIARIWSDVLGIESIEQVSRRDNF
                     FELGGDSIFSLQVQRRISRQLSVEVELAALFAAPTLEAFAAVVATARESAAAAGEGQD
                     RLTDDMQSILSELMQ"
BASE COUNT         1685 a         2630 c         2466 g         1435 t
ORIGIN      
        1 catcgtgcgt gatgacaacg atggtctcgc ccttcacctg gagctccggc agcaactgct
       61 tgtagaacac ttccttgaag gtcgggtcct gatcggcggc ccattcgtcg aagacataga
      121 acggccggtc ttccagatac gtgactagca aagccaggcg cttgcgctga ccttgcgaca
      181 ggtcggtcgt ggaaaacacg ccgtccttga tcgtgacctt gtgatcgagt tgcaggtgtt
      241 caagcagcaa cttcgcttgg gcgtcgagcc cttcaatctt catgccgaac agcgtgtcga
      301 acaggtagaa gtcgttgaag accacagaga aatgctggcg ataaatatcg cggtgcgctt
      361 catcgaccgg cttgccgttg agcaggatct gcccgccttc gggtgcgtaa agtcccacca
      421 gcattttcgc gagcgtcgtc ttgccgctgc cgttaccgcc gatcaggtag atcagttcgc
      481 ccggcttgaa cgtcaggtca atggggccca gcgtgaagac ttcgttctct ttttcgcgga
      541 agtatcgatg cgtgaccttg tcgaacacga tgctgtcgaa ggacttggcc ggtgtttcgt
      601 gcaaggtatc ttcgagcggc aattcagcat tgacctgttc aatgcgctca agcgccacct
      661 tcgccgaact gacgttcggg atggcggaca gcaggccttc gatcggcatg atcatgtaca
      721 ggaagatcat ggcgtagccg gacatcacgt gcgtgctcac cggaaatgta cgcgcgagca
      781 cgaacagcgt aatgccgata aacgcaaaca gaatgaagct gccccagctc gcggccgccg
      841 agtacaggat ataaccgcgc gtgcgctgga cgcgtactgc ttccacgttg gtttccagcg
      901 tttctgtcac gaatgcattc ttgcgctcgc gatgcagctt gagctccttg gcgccgtcga
      961 agagcgcgcg gaaatgcttg acgagatcgt cctccttgcg ccgtgacccg cgcagatgaa
     1021 acagcgcttt cgtgttggca atatgaaaac cgagcgagcc gatgaagatc gtcaagacgg
     1081 cgaagagcag gatctgccat gacaaataac cgagatacgc gaggcaacct gcgatcaccg
     1141 cgccgtgcat cgcaagcgcg ggcaggctta agaacagcac gacgatcgta tccagatctt
     1201 gcgtcagcac ggtgagcgcc ttggacgcgc cctgcttttc cagatgctga tacgacgctt
     1261 cggcaatgcg ccggatggtg cgcatgcgca gcgtcgcctt ggcgcgctgg ccgagctgca
     1321 tgaatagcgt ttgcgacaat gttcgtgtgc cgagcacaac tacgcccacg atcaggaatt
     1381 gccagccgag ttcgacgagc ttcgtattcg acgctccgag cgcctggtta atcagtgcta
     1441 tgagcgccgc gttgccgaac ccgctcacga ggctcgccac caccgcgaca gccagcaccc
     1501 agcgtgagtt gcggacaaga taccagaaca gcgacatgaa actccttgtg gtgcaacgag
     1561 tgaaaaccga acgtaatccc tcgaataaaa ggactaaagg gacggtccga ccgcgtcaca
     1621 gaataattaa tttgacaaat gaagtcaatt aaatgcgaat catttgcatt tgtttgtctt
     1681 cacggataga gcggccgtgc ggaggcttcg aaaggatgcc caacgcttga agcatcacga
     1741 accggacgca tcacgcgggt tgcgtttgaa catcgtgaca atgaggtaca cgccacccag
     1801 cagcgtcgcc atcacgcctg ccggcatttc ctgcgggaac aggacccagc ggccaagcca
     1861 gtcggacgcg accatcagcg ccgcacccag agccgccgaa acgaacagca acggcacagc
     1921 ccgccggata ccgagcatgc gtgtcatgtg cggcgccatg aggccgataa atgacagcgg
     1981 gccgatcacc agtgtcgctg ctgccgtcag cagcgcgctc agcagcagca gcgcaaaacg
     2041 cgcgacggta atgtttactc ccaagcctcg cgagacagcc gcgcccaacg gcaggatctc
     2101 cagccagcgc cggcaaaacg gcaccgcgca aagtgcagcc agcgcggcca cggcgacgac
     2161 gcctgccgca cccgcgctga cgttataagt cgacccggcg agcaggttgt agaggacgat
     2221 cacgcgggga tcgtcgctgg caacggcaat ggtcgacacc gcctggaaca cggcgctgat
     2281 tgtcacgccg gcgagtatca gcgtgtcggg tgcataggac gatttgcgtg caaagagcaa
     2341 cagcgcgccc aatgtaatca gcgatccgca tgcacaccag acaaggaacg tcggcagccc
     2401 cggactggcc gtcaggaaaa gcgcgccggt gagtcccagc gcgccgccgg ccgtgatgcc
     2461 gagcaggtcg ggactcgcca tcggattgcc cgtcatgcgc tggaccattc cgcccgcgag
     2521 cgcgagcagc acgcctacgc ccatcgctgc gactacatgc ggcaaacgca ggaacagcaa
     2581 cgcagagatc tcatcggggc ggctgatatg ccagcctgca agaccccgcc ccacgccaag
     2641 cgacaagccg gtgaccacca gcaaaagcag tacgcagatg cacgtcgtga aagccagcgc
     2701 gcgcgatgac agcgggtctg actggatcgc gggcgcgtgg ttcaggtcgg gccgtccacg
     2761 caagcgtcgc aacatgacca gaagcagggg tgcacccagc aacgtggtga tcgcgcccgt
     2821 cggaatggtg gttccgtaac gtcgcgcgaa ttcctgcgcg atctgatccg ctagccacag
     2881 caaggccgcg ccgaacaacg gcgaccacaa catccggtcc cgcaagcggc gtgcgccagc
     2941 aagacgcgcg agcgtcggtg cggcaagtcc gataaagccg atcacaccca ctgcgctcac
     3001 cacgaatgcg gtcacgagca aggtcaggaa gagcgcggcg ccgcgcgtca tacgcaacga
     3061 gacgcccagg ctgctggcga cggtgtcgcc gagatcgaag acggccatgg gccgcatgca
     3121 cagcagcagc aagaccacgc acggcgcgag tcgcacgagc agcgccagcg cgacgctcca
     3181 gtcgtgttgg cccagcgaac cgccgcccca gatcatcagc gcgcttaaca ggtcgtagtg
     3241 ggagatcgcg agcgcgaaac tcagcgcgcc gcagcacagg ttgacgatca tgccgccgag
     3301 gatcagcgcc agcggcgaga tgccgcgtcg cgccgccagc gcaaaaacaa tcgccaatgc
     3361 caccgcgcca ccggccagcg caacgccgtc acggccggat accagcaagc ctggtgcgta
     3421 gaccgttgct atcgagagcg caagatagga gcctgagaag agcccgagcg tcatcggttc
     3481 agcgagcgga ttgcgcagca cctgctgggt cgccacgccg gcaagcccga gtgccgcgcc
     3541 gcacagccac gcgaccgcga tgcgcggcag gtcgccgtag tggacaagta gttgccgcag
     3601 gtccgtcggc gatggagcgg tcagcgcttg ccaccacaac gacgccggca accggccctc
     3661 caacctgtgc agcgacaaca gcgcggccag cacgatcaca agacaaaccg gcaggagtgg
     3721 ccagcgtcgt gagggaacca cagggacggt cgcgacgctt ttcatgcgtg ctccttcgcg
     3781 gcacgggtct gttcactggt ctgctcgaag gcatcgacga gtacacgggc gaagagcatc
     3841 gcggaaagaa cgcagccgtc gggaggaaca cgcggcaggc ctatcatgcg gccctcgttc
     3901 gtgaacggca tggcgtgcca caaggggctg gttttcatca tgttcacaac ggaagacgca
     3961 agtggcttca tgtagagcag ggtcgcgttg ggcacgctgc ccagcacctc gaaaccggtg
     4021 gtggagtagg ctcccgagtg gaccgcattt tgtagtccga gcgtcgtcat cagttcgcca
     4081 tagaagctgt tcggaccgaa cacacgcacg tgcgcttcat cgataaaatt caccatgtaa
     4141 agcggcctgc cttttgcacc gcctacatcg cttacacctg gcagcgcgtc aagcgccgtg
     4201 cgcgcgtggt cgagcgccat gtccgcttgc gcgagaagtg ctttggcgcg cgcttcgcag
     4261 cccagcaaac gcgcgagctg cagcgtttcg gcacgtgccg cggaataagg ggcttcactc
     4321 ccccggtaac gcccgagcgt gacggtaggc gcaacccgtt cgagcgccgc ctgaagtctc
     4381 acatgagccg gcgagatgac gatcaggtca ggctttaagg cgaacagcag ttccatgttc
     4441 ggctggaaca tcaggccgag atcgaccacc gacgccggca cttcgcatgc cgtgaaattc
     4501 ctgcggaagt cccgggtgtt cgcgatcccg accggcacca cgccgatgga caacaccatc
     4561 tccgtcagtc cccagtcgag cacgacaaca cggcgcggcg gagctacagg agcgtcacca
     4621 gccagtgcaa catcggacag tgcggttgcg gcaagtgcgc cggcgcccag cagcgcggaa
     4681 agcatggcgc gtcggttcat tgcatcagtt cggaaaggat ggattgcatg tcgtcggtca
     4741 agcggtcttg tccttctccg gccgccgccg cgctttcgcg cgcagtcgcg acgacggcgg
     4801 cgaacgcctc gagcgtcggc gcagcgaaca gtgccgcgag ttcgacttcg actgataact
     4861 gccgcgaaat tcggcgctgg acctggaggc tgaaaataga gtcgccgccg agttcgaaga
     4921 agttatcccg gcggctcacc tgttcaatcg attctattcc aagcacgtcg gaccagatcc
     4981 gcgcgatgac cgtttccact tcgccttgcg gtggttcgta gtgccccggg acagccagtt
     5041 cgggcgacgg tagcgcgtgc cggtccacct tgccattggg cgtcagtggc aaggtgtcaa
     5101 gcacgactat cgacgcgggc accatgtagt cgggcatgac gctgtgcaga gctgttttta
     5161 acgttgaccc gtcgatcacc gtgcccgtct gcgcgctcac gtatgcaaca agacgagcgc
     5221 tgccaatggt gtcgtgaagg gttgccaccg cgtcccgtac gccgggttgt gcaagcagcg
     5281 ccgcctcgat ctcgcccagt tcgatgcgga aaccgcgcag cttcacctga tgatcgatgc
     5341 gcccgagaaa ttcgagttgc cctgagctgt tccagcgcac caggtcaccg gtccggtaca
     5401 agcgcccgcc tctattggtc tcgtcgaacg gatccggtac gaaccgttcc gccgtcagcg
     5461 ctgcgcggtt cagataaccc cgcgccagcc ccgcgccgcc cacgtacagt tcgcccgcca
     5521 tgccctgcgg cacaagattc gacgccgcgt ccagcacata cgatgtgcgc tctcctacag
     5581 gaatgccgat cggtgcatac gcgctatcga attccgacgc tccatccgcg ctccacacgg
     5641 tcgacgtgat caccgtttcc gacggtccat acgcgttgaa aatccgctcg gggcgcaggt
     5701 gtttctttac cgcttcgaag ccgctttgcg accagccttc cccacccaca atgcacgtcc
     5761 tgaccgatac cgtacccggt tcgatttcct gagcaaacgc attgatataa gcaggcggca
     5821 aatccagtat cgatatcttg ttcgccttta tctcggccgc gaggcgttgc gccggccaga
     5881 cggtgtcgtc gcgcaatacg atcgccgcgc cgctgagcaa aggagccagc cactgctcgg
     5941 ccgcggcgtc gaaactgata gaagcgaagt gcagttgccg gtcttccgga gtgatgccgt
     6001 agcgagctgc aatggcccga caatgcatcg acaacgcgtc gtgcgccact gccacgccct
     6061 taggcttgcc ggtggaaccc gatgtgtaga tcacatacgc caggttgccg ccagcgagct
     6121 tcaccgacgg attgcttgcc ggttccgccg atacatcgag cgtgtccaga tccaggcgcg
     6181 tgactcccgc ttctgcaggc agccggccat gaagattcga ctgagtaatc agcaacgtga
     6241 tgccgctatc cgcgatcatg tgagcgagac gttcgacggg gtacgccggg tccagcggta
     6301 cgtatgcgcc acccgccttg aggacggcca gcaggcccac gatcatctcg accgaacgtg
     6361 ccactgcaaa cccgacccgc acttccggcc ccacgccttc tcgcatcaaa cgatgcgcaa
     6421 ggcggtttgc ccgctcgttc acttcgccgt agctcaagct gagattaccg gccacgagcg
     6481 cgagcgcgtc ggtctgctgc ttttcgcgcg cttcgatcag cgtatgtacc ggtagcgcgt
     6541 cttctgctga tgctccccat acgtcggtat ggcccaacgt caacagagct tgtcgctgca
     6601 ccccatcaag cacgtcaaag tcggcaagca gccggtccgc tgcgcccgca aacgcgttca
     6661 gcaggccgcc tgtttgctgc gcaatgcctg ccatgtcccg atcggtaaac gcctcgtgcg
     6721 caaaccggta gtccagcttc agggtgtcgc tcagcatcac gcccaaggtc agtgcgtagc
     6781 tggtttcatc gcaggcacgc acgttgtcga tcgtcaggcc accgggcgat gcatctttca
     6841 aggcggtatc gacgggatag ttctcgaaga ccacgacggt atcgaacaga ccctgggtag
     6901 ttgcaccggc ccagcgctgg atctcataca acggcgtgtg agcgtgttcc tgtgctgtca
     6961 tgcctagcag ctgtaattcg cgcagccagt cgcccagccg cttgccggca cgcggctgag
     7021 cgatcaccgg cagcgtgttg atgaagagcc cgagcaactg cgatgcaccg gtgaggccgg
     7081 caggccggcc agccagtgtt gcgccgaagg tcactgtcgg ctggttcgtg tagcgatgca
     7141 acagcagcgc ccacgcggcc tgaaccagcg tgttcaccgt cactcgttcc tgacgggcaa
     7201 acgcaacgag gcgcgcggtc gctgccggat ccagttcaaa cgtatgttgg ccgtaaccgc
     7261 cggccgtcac ggtgccggtc ccggttcgct cgtagcggct cgcgactgct gtagcaagcc
     7321 gcgttggctc cccgatctgc tttatctgct cgcgccagtg cacggcgctc gcctgcgcgt
     7381 cgtgcttctg cagccagccg atatagtcgc gataccgccc accgtgcgcg ggcaggctct
     7441 gtccgctgta atggcgcagc acctcgccga gcaattgcgc gacactccag ccgtccatca
     7501 gcacatgatg gtgcgtccac atgaagtggt aacgatgtgt atcgacgcgc accagcgcca
     7561 gcctttgcaa aggcgcctgc gtgacgtcga aaccctgctt gagatcggct gaggccatat
     7621 cgtccagcgc ggcggcaagg tcgtgccggc cacgcaagtc gtggtgctta agcggcagtt
     7681 ccacggaccg cgccacccac tgcagccagc cctcgccctg cggcacaaag cccgttcgca
     7741 ggatgtcgtg tcgcgccgtt accgcggccc acgccgcact gaaacgcgcg acatccagtc
     7801 catcgatatc cgcccgcagt tgattcaggt acacgctgct gccgggtgca tacagggtgt
     7861 ggaacaacat gcccgactgc atgggcgaca gcggataaat atccgcgacg ttgttcaacg
     7921 tcagtggcaa tcggtcgagt tcattctgcg ttatcgaaat taattcgaag tccgaaggtg
     7981 tcacaccggt gttgccgctc gtgcagtgct cgatcacgcg ttccagttct acgcggattg
     8041 catcgatcag cccttcaacc gtgttcgccc gataacgctc gccgctaaaa cccacgctca
     8101 acgtaagcgt gccgtccaac accttgccgc tgacagacag gtcatgcggc aacggcgccc
     8161 tttcatcttg cgatcggccc acggattcag acgcgggttg ccaggcagac gtttcg
//
LOCUS       DATGBK010001459         1504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_202555, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001459 DATGBK010000000
VERSION     DATGBK010001459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202555"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1019
                     /gene="flgL"
                     /locus_tag="VKJ77_20345"
     CDS             <1..1019
                     /gene="flgL"
                     /locus_tag="VKJ77_20345"
                     /inference="COORDINATES: protein motif:HMM:TIGR02550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HMC47680.1"
                     /translation="MQSIQSLVVNAGNGTLNDTDRSALATQLQGYRSTLTTLANTTDS
                     NGNYIFAGFQGGSKPFSDNASGVGATYDGGPGQRQVQISDTRTINVADAGSAIFQSVS
                     SNESSPVSSGSAANTGSGTISPVSVSNSSDPANSLIYTITFGTTTSGTPPTSVSSYSV
                     TSTDPSTTPPTTTAPTTPTPYTAGGNITVGSQTVAISGTPASGDTFTVAPANTGNVSD
                     TDIFTTLDSLVNALKQPADTPAAQATLQNALTMAGAKISNTYNNVLTTQTAVGGREQE
                     VTATQTAMQTTATQTANNLSDLVSVNLPSAISQYEMTQTSLQAAQQAFAQIQKMSLFN
                     YLSS"
     gene            1227..>1504
                     /locus_tag="VKJ77_20350"
     CDS             1227..>1504
                     /locus_tag="VKJ77_20350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012493668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4172 domain-containing protein"
                     /protein_id="HMC47681.1"
                     /translation="MIRGEWTYIWEYPDWPAWRYDLSLIAAPLAAVSRAQGLLLGRLA
                     DVGLTLRNQASLAALTEDVLKTSEIEGERLNADSVRSSIARRLGVDIGA"
BASE COUNT          317 a          465 c          459 g          263 t
ORIGIN      
        1 tgatgcagag catccagtcg ctggtcgtga acgccggcaa cggcacgctc aacgacaccg
       61 accgcagcgc gcttgcgacc cagctccagg gttatcgcag cacgctgacg acacttgcca
      121 acaccaccga ctccaacggc aactacatct ttgccggttt ccagggcggc tcgaagccat
      181 tcagcgacaa cgcctcgggc gttggtgcga cctacgacgg cggtcccggc caacggcagg
      241 tgcagatttc cgacacccgc acgatcaacg tagccgacgc aggttcggcg atattccaaa
      301 gcgtttcgtc gaacgaaagt tcgccggttt cgtcgggatc ggccgccaat acgggttcgg
      361 gcacgatcag tccggtcagc gtgagcaaca gcagcgaccc cgccaactcg ctgatataca
      421 ccatcacgtt cgggaccacg accagcggca cgccgcccac gagcgtcagt tcgtactcgg
      481 tcacgtccac ggatccgtcg acgacgccgc ccaccacaac cgcgccgacc acgccgacgc
      541 cttatacggc cggcggcaac atcacggtgg gttcgcagac cgtcgctatt tccggcacgc
      601 cggcatcggg cgatacgttc actgtggcgc cggcgaacac cggcaacgtc agcgatacgg
      661 acatcttcac gacgctcgat tcgttggtga atgcgttgaa acagcctgcc gatacgccgg
      721 ccgcgcaggc gacgttacaa aacgcgctga ccatggcggg agcgaaaatc agcaacacgt
      781 acaacaacgt gctgacaaca cagacggcgg tgggtggccg cgagcaggaa gtcacggcga
      841 cgcagaccgc gatgcagacg accgcgacgc agaccgccaa caatctgtcg gacctggtaa
      901 gcgtcaatct gcccagtgcg atcagccagt acgagatgac gcagacttcg ctgcaggccg
      961 cacagcaggc gtttgcgcag atccagaaaa tgtcgctgtt caactatctg agcagttaag
     1021 cgccgggggc gagtcgggaa ggaattgatg tgggttgtag gatgtgtttt gggccgccgg
     1081 tttgaagggc ggcccttttt attgggtcat gccggcgcgc tggagccctt tctgcaaaag
     1141 gcgtgcggag aatagcgagc ctattctccg cattttatgc ggagaataaa tcaccatttg
     1201 cggtgattgc acctcataat caccgcatga tacgcggaga atggacttat atctgggaat
     1261 atcctgattg gccggcctgg cgctacgatc tgtcgctgat cgccgcgccg ctggccgcgg
     1321 tcagtcgcgc ccagggtttg ctgctcggac ggctcgccga tgtcggtttg accctgcgca
     1381 atcaggcaag cctggccgcg ctcaccgagg acgtgctaaa gaccagcgag atcgaagggg
     1441 aaaggctgaa tgcggattcg gtccgatcgt ctatcgcgcg ccggcttggg gtggatatcg
     1501 gcgc
//
LOCUS       DATGBK010001460         1986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_202572, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001460 DATGBK010000000
VERSION     DATGBK010001460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202572"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1107
                     /locus_tag="VKJ77_20355"
     CDS             <1..1107
                     /locus_tag="VKJ77_20355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47682.1"
                     /translation="DDMTVEFHLDAPNGNFPYYVSSDTYNAVILPANFSGTYEKSFPG
                     TGPFKFDSYTPKVGAAFVRNPDYWGEKALPERVTFAFYADQQSQLLALQGRQADVMSD
                     FTVQGGVSMMTNPEFKVLGVKSSAHRQMHMRTDTGPFKDKRVRQALALALNRDVMVKG
                     LFKGRAALGNDSPFSPVFPSSDLSVPQRKLDIAKAKQLLAAAGVPNGFDVTLTTEKYM
                     EIPDLAVVIQNAAKAAGIRITLKVESQELYYGAGTFGKSDWLDSPLGITDFGHRGVPN
                     VFLNAPLTSEGTWNAAHFKNPQYDKLVADFEAALDVASQKKLSGQIQTLLLDETPVVI
                     PYFYDQLIVTRANVKGVRFNAISQLYFERATIGA"
     gene            1177..>1986
                     /locus_tag="VKJ77_20360"
     CDS             1177..>1986
                     /locus_tag="VKJ77_20360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008919578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47683.1"
                     /translation="MNTVSPPAAPGAPKVSLRSNAGSAARIARFIGVRLLLAIITLWL
                     LSVIVFAGGQLLPGDVGRAILGPLADARAVAALNHQLGVDRPLFTQYASWISHFVRGD
                     MGQSYSYRAPVAPFIGDALLNSAKLGALAFIVVVPLGIAGGVYSALHEGRWIDRTISI
                     AGLSATVVPEFVSSIVLILVFGIWLQWLPIEATFPPGSNVFIQLQHLILPVLPLVLVF
                     FGYIARMARAGTVEALDADYTRTAILKGLPRRVVIMRHVLRNALLPTVTVAA"
BASE COUNT          348 a          596 c          629 g          413 t
ORIGIN      
        1 gacgacatga cggtcgagtt tcatctcgac gcgccgaacg gcaatttccc gtattacgtg
       61 tcgtcggata cgtacaacgc cgtgatcctg ccggcgaatt tcagcggcac gtatgagaag
      121 tcgttccccg gtacgggacc gttcaagttt gactcgtaca cgccgaaagt gggcgcggcg
      181 ttcgtgcgca atccggacta ctggggcgaa aaggcacttc ctgagcgcgt aacgttcgcg
      241 ttctacgccg accagcagtc gcaactgctc gcgctgcagg gccggcaagc cgacgtgatg
      301 agcgacttca ccgtgcaggg tggcgtcagc atgatgacga accccgagtt caaggtgctg
      361 ggcgtgaagt cgagcgcgca tcggcaaatg catatgcgta ccgacaccgg tccgttcaag
      421 gacaagcgcg tgcgccaggc gctggcgctg gcgttgaatc gcgacgtgat ggtgaagggg
      481 ctgttcaagg gccgcgccgc gctgggaaat gacagtccgt tctcgccggt gtttccgtcc
      541 agcgacctgt cggtgccgca acgcaagctc gatatcgcga aggcgaagca attgctcgcg
      601 gctgcgggcg tgccgaacgg tttcgacgtc acgctcacga ccgagaagta catggagatt
      661 cccgatctcg cggtcgtgat ccagaacgca gcgaaggcgg ccggcatccg catcacgctg
      721 aaggtggaaa gccaggagct gtactacggc gcgggcacgt tcggcaaatc ggactggctc
      781 gattcaccgc tcggcatcac ggatttcgga catcgcggcg tgccgaacgt tttcctcaat
      841 gcaccgctca ccagtgaagg cacgtggaac gcggcacatt tcaaaaatcc gcaatacgac
      901 aagctggtgg cggatttcga ggcggccctc gacgtggcat cgcagaagaa actctcgggc
      961 cagatccaga ccttgctgct cgatgaaacc ccggtcgtga tcccctattt ctacgatcag
     1021 ttgatcgtca cgcgggcgaa cgtgaaaggt gtgcgcttca atgccatttc gcagttgtat
     1081 ttcgaacgcg cgactattgg cgcgtagccg gttctttttg aatctcgcgc tcgttgaagc
     1141 tggctcaatg aagcctgacc cgaggatgct ccgatcatga acacggtctc tcctcccgcc
     1201 gcgccgggcg cgccgaaagt aagcttacgc agcaacgccg gaagcgccgc gcgcattgcg
     1261 cggtttatcg gcgtgcggct gctgctcgcg atcatcacgt tgtggctgtt gtcggtgatc
     1321 gtgttcgcgg gcggccagtt gctgcccggc gatgtcggcc gcgcaatcct cgggccgctg
     1381 gccgacgccc gggcagtcgc cgcgctcaat catcaactgg gtgtcgaccg gcctttgttc
     1441 acgcaatacg ccagctggat ttcgcacttt gtgcgcggtg acatgggtca gtcgtattcg
     1501 tatcgcgcgc cggtggcacc tttcataggc gacgcgttgt tgaactcggc caagctcggc
     1561 gcgctggcgt ttatcgtcgt cgtgccgctc ggcattgccg gcggtgttta ttccgcgctg
     1621 cacgaagggc gctggatcga ccggaccatc agcattgcgg ggttatcggc gacggtggtg
     1681 ccggagttcg tctcgtccat tgtgctgatt ctcgtgttcg gcatctggct gcaatggctg
     1741 ccgattgaag cgacgtttcc gcccgggtcg aacgtgttca ttcagttgca gcatctgatc
     1801 ctgcccgtct tgccgctggt gctggtgttc tttggttaca ttgcacgaat ggcacgcgcc
     1861 ggcaccgtcg aagcgctcga tgccgactac acgcgcacgg cgatcctcaa gggcctgccg
     1921 cgccgcgtgg tgatcatgcg ccacgtgctg cgcaatgcgc tgctgccgac cgtcactgtt
     1981 gccgcg
//
LOCUS       DATGBK010001461         5175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_225893, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001461 DATGBK010000000
VERSION     DATGBK010001461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5175
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225893"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..1913)
                     /locus_tag="VKJ77_20365"
     CDS             complement(27..1913)
                     /locus_tag="VKJ77_20365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HMC47684.1"
                     /translation="MWGNLWLAVLLGALAFSSGAAEQNGDAHPRRLALVIGNASYEDQ
                     PLANATRDAAATGEMLSQLGFEVMAYSNLDRAHMNEAVHEFNKRLSAGGVGLLYFAGH
                     AMQVGKATLLLPVDAQGSPAAPITKGIELESILAGMSAPRSDQLNLVVLDTCLNNPYD
                     PANVSTVQPPSRTIVAYATAPGEYAADGSQHGTYTSALLRAITQPGRNVADVFDDVSR
                     SVSHSTQGRQVPWMAEGPAAATDTFQFAPPSLQASNSDSISGRLTMASETVLAFQSRG
                     ILPKDSNEQYELTFWESIKDSSYPSDYEAYLKAYPNGRFATLAHARIDRLRASAAAPK
                     AQSQAQAQADHAHAATSPASAPLAPSAPAPAEKSVAISAPPPTPAPKPAIKTAVSTAG
                     EIRDCATCPALVALPGGTFEMGSNSDDPAERPVHRVSVGQPFAIGKYEVTVEQWNACA
                     DASGCPRIDIEGSPSKSTPVHNLSWDDAQVYVKWLSKTTGKTYRLPTEAEWEYAARGG
                     TTTTYWWGNEMRKGYADCKDCGEPWRKDGPVNVGSFTPNPFGLFDMNGSVWEWVGDCW
                     HSSYKGAPADGRVWDEAGCPMRVIRGGSWPDGGAYMQSSTRFKYSASVRQSQNGMRVA
                     RDMK"
     gene            2358..2753
                     /locus_tag="VKJ77_20370"
     CDS             2358..2753
                     /locus_tag="VKJ77_20370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4399 domain-containing protein"
                     /protein_id="HMC47685.1"
                     /translation="MTVLMPSRSFSAARTPSPPGAEAFIIWPADGTVITGGKLWVRMG
                     LRNMGVCPKGVNIPNVGHHHLLIDTELPPFDEAIPSDRQHLHFGAGETDARIELPPGK
                     HTLQLLMGDYNHVPHDPPIYSKKITITVR"
     gene            2815..3267
                     /locus_tag="VKJ77_20375"
     CDS             2815..3267
                     /locus_tag="VKJ77_20375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012353422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4399 domain-containing protein"
                     /protein_id="HMC47686.1"
                     /translation="MKKFCAAGAIAISIAVSLISVSVSGSALAGPTPAPANAYAYIGY
                     PNNGQTLPAGKPFRVWFGLRYMGVAPRGVKYPNTGHHHLLIDTDLPSSFDEEIPSDRQ
                     HLHFGAGETETTLELPPGKHTLQLLMGDYMHVPHNPPVYSKKITIYVK"
     gene            3542..3808
                     /locus_tag="VKJ77_20380"
     CDS             3542..3808
                     /locus_tag="VKJ77_20380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47687.1"
                     /translation="MKSLTIKDLSITEELDSRAMSAVRGGNLPGFWPSYSSSTTNLSF
                     GAEQLISQSQNTISNNGNNVAFASGISSTVKPTQTANNYNTVNF"
     gene            4002..>5175
                     /locus_tag="VKJ77_20385"
     CDS             4002..>5175
                     /locus_tag="VKJ77_20385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC47688.1"
                     /translation="MVLPVLACTTLLSGCIDVNVPDYKRPDTPAKATWSQTAKALVSP
                     ADTITLDWWKQFHDPYLDSLVSKAIAGNFDIKILAARVSVAGGQINEARAGALPTADL
                     GAGAEFDKTTRQDFSKQYNVATQVNWDIDIWGAVEKGVQAQKAEYRASEADWRAGYLT
                     LVSDVSTTYFQILQFDDQIDQQQKTLRTNQQILTIYEGMAKNGLVPNTQVLTQRAEIN
                     RLTKDLLELHRARDLANNALATLIGVPAGEFTVPVGQLEKRVQIPVVPAGLPSQLMAR
                     RPDVVAAEYRVLEAYDVVGQAKLAQLPTISLTGRGGSASFALTDLLKSFTFSFMPSIN
                     IPLLDPSVRAHVKATEAQTIVVEQQYRRTVMGAFEEVENSLVNLDAHTKQRTELQEE"
BASE COUNT         1044 a         1597 c         1528 g         1006 t
ORIGIN      
        1 acaatagcgc tcgctacaag acctcgttat ttcatgtcgc gtgccacgcg catgccgttt
       61 tgcgattgcc gcacgctggc gctgtatttg aagcgcgtgg acgactgcat gtaggcgcca
      121 ccatcgggcc atgaaccgcc gcggatcacg cgcatcgggc agcccgcctc gtcccacacg
      181 cggccatccg ccggcgcgcc tttatacgag ctgtgccagc agtcgcctac ccattcccag
      241 acgctgccgt tcatgtcgaa gagtccgaag gggttgggcg tgaaggagcc cacgttcacc
      301 ggaccatcct tgcgccacgg ctcgccgcag tccttgcagt ccgcgtaacc cttgcgcatc
      361 tcgttgcccc accagtatgt cgtggtggtc ccgcctcgcg cggcatattc ccactcggct
      421 tcagtcggca gccgatacgt cttgccggtc gtcttgctga gccatttaac gtagacctgt
      481 gcgtcgtccc agcttagatt gtgcacgggc gtggatttcg aggggctgcc ttcgatatcg
      541 atgcgcgggc acccggatgc atccgcgcac gcgttccact gctcgacggt cacttcgtat
      601 ttgccgatcg cgaatggctg gccaacgctg acccgatgca cgggacgttc ggcgggatcg
      661 tcggaattgc tgcccatctc gaacgtaccg cccggtagtg caaccagcgc cggacaggtg
      721 gcgcagtccc tgatctcgcc agcggtggaa acggctgtct tgatggccgg cttgggagca
      781 ggcgtgggcg gcggcgcaga aatggccacc gatttttcgg caggcgccgg cgcagaggga
      841 gccagtggag cggatgcagg tgatgttgcc gcgtgcgcat ggtcggcttg cgcctgcgct
      901 tgcgattggg ccttcggagc ggcagcagaa gcacgaagcc ggtcgatacg ggcgtgagcg
      961 agcgtggcaa agcgcccgtt aggataggcc ttcaaatagg cttcgtagtc gctcgggtag
     1021 gagctgtcct tgatcgactc ccagaaggtg agttcgtatt gttcgttgct atccttagga
     1081 agaatccccc ggctttgaaa cgcaaggacg gtttcggatg ccatcgtgag tcggccgctg
     1141 atgctgtcgc tgttgctcgc ttgcagagag ggcggtgcga actggaacgt gtctgtcgcc
     1201 gcggcaggtc cttctgccat ccacggtacc tgccgtccct gcgtcgaatg actgacggat
     1261 cgcgacacgt cgtcaaacac gtccgccaca tttcgccccg gctgggtaat cgcccgcaac
     1321 aacgccgagg tatacgtgcc atgttgcgag ccgtcggccg cgtattcgcc gggtgcggtc
     1381 gcatacgcga cgatcgtcct cgagggcggc tggacggtgc tgacgttggc cgggtcgtat
     1441 ggattgttca gacaggtatc gagcacgacc agattgagtt gatcgctgcg cggcgccgac
     1501 atgcccgcaa ggatgctctc caattcgatg cccttagtga tcggagcagc gggtgacccc
     1561 tgcgcgtcga ctggcagcag cagcgtggcc ttgccgacct gcatcgcatg tccggcgaaa
     1621 taaagcaggc ccacgccgcc cgcactcagg cgcttgttga attcgtgaac cgcttcgttc
     1681 atgtgtgcgc gatccaggtt cgagtacgcc atgacctcga agccaagctg gcttagcatc
     1741 tcgccggtgg ccgccgcgtc gcgcgtggcg ttggcaagcg gctgatcctc gtagctcgca
     1801 ttgccgatga ccagcgccag gcggcgcgga tgcgcgtcac cattttgctc agcagcgccg
     1861 ctgctgaatg cgagcgctcc cagcaggacc gcgagccaca gatttcccca catgagtctt
     1921 cgccgcatga tcacaccccg tgccggtatt cgacggcgct tcaggagccg cgccagagcc
     1981 gcatgatccg caagagcgca acaagcactc acgcagaatc cgatcgtccg atgggcgagc
     2041 atcacaacca accatagcac gcaactactt catatcaacg tggtcaaggc gccgtaacca
     2101 tgcaacgtgt cgtgaatcgc ccgggaattg gccttttatg acgaattcgt cttgcaataa
     2161 agatggatac ctaaattatt cagacaatac agaatgacta ttcgattgga ccacaccagg
     2221 acaacggtca aatagcgctc cttcaaggca tgtcttttta acggattccg tcctaagcta
     2281 acaaatagaa aaccatgcat aaggttcggg agaatacgaa aatgctaaga agaaccgccc
     2341 tcggcgtgct cgctttcatg acggtgctca tgccgtcgcg ttcattctcg gctgcgcgca
     2401 cgccgtctcc cccgggcgcg gaggcattca tcatctggcc ggccgacggc acggtgatca
     2461 cgggcgggaa actctgggtc cgcatgggcc tgcgcaatat gggcgtgtgc ccgaagggcg
     2521 tcaacatccc caatgtagga caccatcacc tgctgatcga tacggagttg cctccgttcg
     2581 atgaggcaat cccctcggac cgccagcatc tgcatttcgg cgctggtgaa accgatgcgc
     2641 gaatcgagtt gccgccgggc aagcacacgc tgcagttgct catgggggac tacaaccacg
     2701 tgccgcacga tcccccgatc tattcgaaga agatcacgat caccgtgcga tgaagtatat
     2761 gcatggcggt gtgggtattc aggcgggctg cagactaagg ggagggcgtg tgccatgaag
     2821 aaattttgcg ctgcgggggc gatcgcgatc tcgatcgcgg tctcgctgat atccgtgtct
     2881 gtatccgggt ctgcgctggc cggcccgact ccggcgccag ccaatgcata cgcgtatatc
     2941 ggctatccga acaatggtca gacgctcccc gctggcaagc catttcgcgt gtggttcggg
     3001 ttgcgctaca tgggcgttgc cccgcgcggc gtgaaatatc cgaatacggg tcaccatcat
     3061 ttgttgatcg acacggatct gccctcgtcg ttcgacgagg agattccctc tgaccgccag
     3121 cacttgcatt tcggcgcagg cgaaacggag accacactag agttgccccc cggcaaacac
     3181 acgctgcaac tgctgatggg cgactacatg catgtcccgc acaacccccc tgtctattcg
     3241 aagaaaatca ctatctacgt taaatgatcg gccggttcac gcgcagcgag tgtcgcgcgt
     3301 gaaccaacag ttcatcgaat aagcgttggt cgtcgcccat cacgcgagtc ctgcgcgact
     3361 cgccggcagt cgccgtccgt agtgcggtgt cattgcgcaa accctttccc agtaaccctc
     3421 agaacgcctt aggtcggttc atcggtcacg cctggcacgg gccatgcatt agtgtccagc
     3481 gagcagacat gatgctcacc aacctctaaa gccacctggc ttaaccctta ggagaactgc
     3541 catgaaatca ctcaccatca aagacctgtc catcaccgaa gaactcgaca gccgtgccat
     3601 gtcagccgtg cgtggcggta acctgccggg cttctggccg agctacagca gctcgacgac
     3661 caacctctcg ttcggtgcgg agcagttgat cagccagtcg caaaacacga tcagcaacaa
     3721 cggcaacaac gttgcctttg caagcggtat ctcgtcgacg gtcaagccga cccaaaccgc
     3781 caacaactac aacacggtca acttttgatc gtcaggcgca ggcagcgaag gtcatccgac
     3841 cttcgctgcc gcaccggcct caacgcccag ccggcaagtc ttccagccgc attcaatcta
     3901 cccggagtga gatcgtgcaa gtcatgtcgc catcgcgcgg gttgcagggc cgcgctaccg
     3961 agttttcagc accgggtgtc gcacacgtcc tgtttgcacg catggtgctt ccggtacttg
     4021 cctgcacgac gcttctcagt ggttgcatcg atgtgaacgt gccggactac aagcgtcctg
     4081 atacgcccgc caaggccacc tggtcgcaaa cggccaaggc gctggtctca ccggccgaca
     4141 ccattaccct cgactggtgg aagcaattcc acgaccccta tctcgactcg ctcgtcagca
     4201 aggctatagc aggcaacttc gatatcaaga ttctcgcggc gcgcgtgtcg gtcgccggcg
     4261 gacagatcaa cgaggcgcgt gccggagcgc ttcccaccgc cgatctcggc gcgggggcgg
     4321 agtttgacaa aaccacgcgg caggattttt cgaagcaata caacgtcgcc acgcaggtga
     4381 actgggacat cgacatctgg ggtgcggtcg agaagggcgt gcaggcgcag aaggccgaat
     4441 atcgcgcgtc ggaagcggac tggcgcgcag gctatctcac gctcgtatcc gatgtttcaa
     4501 cgacctactt tcagattctt cagttcgatg accagatcga ccagcagcaa aaaacgctgc
     4561 gcaccaacca gcagatcctg actatctacg aaggcatggc gaagaacggc ctcgtgccga
     4621 acacgcaggt cctgacgcag cgcgccgaaa tcaatcgttt gacgaaagac ctgctcgaac
     4681 tgcatcgcgc ccgcgatctg gcgaacaacg cgctggccac attaatcggt gtcccggctg
     4741 gcgaattcac cgtgccggtg gggcaactcg aaaagcgcgt gcagattccc gtcgtgccag
     4801 cggggttgcc gtcgcaattg atggcgcggc gaccggacgt agtggcggcc gaataccgcg
     4861 tgctggaagc gtatgacgtc gtggggcagg cgaagctcgc ccagttgccg actatcagcc
     4921 tcacgggccg gggcggtagc gcgagtttcg cgctgaccga tttattgaag tccttcacgt
     4981 tcagcttcat gcccagcatc aacattcctc tgctggatcc aagcgtcagg gcgcatgtca
     5041 aggcgaccga ggctcagacg attgtggtcg agcaacagta tcgacgcacc gtgatggggg
     5101 cgttcgagga agtggagaat tcgctggtca accttgacgc acatacgaag cagcgcaccg
     5161 aactgcagga agaag
//
LOCUS       DATGBK010001462         1874 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_178889, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001462 DATGBK010000000
VERSION     DATGBK010001462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1874
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178889"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..698)
                     /locus_tag="VKJ77_20390"
     CDS             complement(<1..698)
                     /locus_tag="VKJ77_20390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HMC47689.1"
                     /translation="MSRTIKFAKAGGPEVLEFVETEVPAPGPAEVRITVKAIGINRAE
                     AMWRADAYIEPVKFPAGLGYEAAGIVDAVGSDVTGFAPGDKVNLIPSFSMNQYHAYGE
                     VIVAPEHAVVKHPESLSYAEAASVWMMFVTAYGALVEDAKVSKGDFVIIPAASSSVGL
                     AAIQIANYAGATSIATTRTADKKQQLLDAGAAHVIVTDETDLVEEVTRITGGQGARVA
                     FDPVGGPNFPKLISA"
     gene            complement(773..>1874)
                     /locus_tag="VKJ77_20395"
     CDS             complement(773..>1874)
                     /locus_tag="VKJ77_20395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HMC47690.1"
                     /translation="TPKKVGAYTLSHRVALAPMTRLRTIQPGDIPSPMMADFYGQRAS
                     NGGLEIIEGVSISIPARSYLGAASFYHDGQVEGWKAIAKAVHAKGGRVFMQLIHGGRQ
                     SHVEMTGGVDPVAPSVVPFDGVALTKDGFVPASPHRALGIEEIPGIVEEFRVAAHRAL
                     DAGFDGVELHGANGYLVDQFIQDGTNKRTDAYGGSIENRVRFLRETVEALISVWGADR
                     VGVRISPSGEWGGISDSNPEATFSYVAKVLDEYKIAYLHVIEPRIKGDETLHEGQAPV
                     ATKYLRPHFSGPIIAAGGFDGDSAEAIVASGDADLVAFGRHFSSNPDLPYRLKHRLPL
                     TPYVRAAFWGGDEKHYSDFPAYLPTLEVAEAV"
BASE COUNT          355 a          564 c          581 g          374 t
ORIGIN      
        1 gcggaaatca gcttcgggaa gttcggaccg ccgaccgggt cgaacgcgac gcgcgcaccc
       61 tggccgcccg tgattcgcgt gacctcttcg accaggtcgg tctcgtccgt gacaatgacg
      121 tgcgccgcgc ccgcatcgag caactgctgt ttcttgtcgg ccgtgcgcgt tgttgcgatg
      181 gacgttgcac cggcatagtt ggcgatctgg atcgctgcga gtccgacgct gctggacgca
      241 gccgggatga tcacaaaatc gcccttgctc acctttgcat cttcgacaag cgcgccgtaa
      301 gccgtcacga acatcatcca gaccgatgca gcctcggcat acgaaagcga ttccgggtgc
      361 ttaaccaccg catgttccgg cgcaacgatg acttcgccgt acgcgtggta ttggttcatc
      421 gagaacgacg gaatcaggtt gaccttatcg ccgggcgcga agccggtaac gtcgctgccc
      481 actgcatcga caatacccgc tgcttcgtac ccgagtccgg ctgggaattt gaccggttca
      541 atgtaggcat ctgcgcgcca catcgcctcg gcgcggttga tgcctattgc cttgactgtg
      601 atgcgaactt cggccggacc gggtgcgggc acctctgtct cgacgaattc gaggacttcg
      661 ggaccgccag ctttggcaaa tttgatcgtg cgtgacatga gactctccag agtaattggg
      721 ttcaagcggg gttcaagctg ggttctagca aagcgccgaa gcgccgttcg gttcacacgg
      781 cttctgcgac ttctaaagta ggcaaataag ccgggaaatc cgagtaatgc ttttcatcgc
      841 cgccccagaa tgcggcgcgg acatacggtg tgagcggcag cctgtgcttc agacgatacg
      901 gcaaatccgg attcgacgag aagtgccggc cgaacgcgac caggtctgca tcgccggatg
      961 ccacgatcgc ttcggcgctg tcgccgtcga aaccgccggc tgcgatgatc ggaccggaga
     1021 agtgcggacg aaggtacttc gttgcaacag gcgcttgccc ttcatgcagc gtttcgtcgc
     1081 ccttgatgcg cggctcgatc acgtgcagat acgcgatctt gtattcgtcg agcaccttcg
     1141 cgacgtagct gaaggttgct tcgggattgc tgtcggagat gccgccccat tcgcctgacg
     1201 gcgagatgcg tacgccgacc cgatccgcgc cccacacgga gatgagggct tcaacggttt
     1261 cgcgcaggaa gcggacacgg ttttcgatcg agccgccata cgcgtcggtg cgcttgttgg
     1321 tgccgtcctg gatgaactgg tccaccaggt agccattcgc accgtggagc tcgacgccat
     1381 cgaaacctgc atccagcgca cggtgtgccg cgacgcgaaa ctcttcaaca atgcccggaa
     1441 tctcttcaat gccgagtgcc cgatgcggcg aggccggaac aaaaccgtcc ttggtcagcg
     1501 cgacgccatc gaacgggacg accgaaggtg cgaccgggtc aacaccgccg gtcatctcga
     1561 cgtggctttg acggccgccg tggataagct gcatgaagac gcggccaccc ttggcatgaa
     1621 cagctttggc gatcgccttc cagccttcta cctgcccgtc gtgatagaag ctcgcggctc
     1681 ccaggtagga gcgggcggga atcgagatgc tgacgccttc aatgatttcg agcccgccat
     1741 tcgatgcgcg ctggccgtag aagtcggcca tcatcggact gggaatgtcg ccgggctgga
     1801 tggtgcgcag tcgggtcatt ggcgcaaggg cgacacgatg cgagagggtg taggcgccaa
     1861 ctttctttgg tgtg
//
LOCUS       DATGBK010001463         2822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_294987, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001463 DATGBK010000000
VERSION     DATGBK010001463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2822
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294987"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VKJ77_20400"
     CDS             complement(<1..519)
                     /locus_tag="VKJ77_20400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47691.1"
                     /translation="MIFSTHLKVLGVSLAASILVLGACAPLPTDGSAGSALPASSAVP
                     VAVAKPQLPTRRSAQVDSTGAPAPQRIEVGGPSGYRTEVSITPPKQVCDLDAFADGVQ
                     YGYAYTWNRLEMEQAREGGKTAGAPQPQFDPSAIRLQDEQYKIVWNGAQRVNACASDG
                     YLIGRIVGTHRAY"
     gene            complement(744..1811)
                     /locus_tag="VKJ77_20405"
     CDS             complement(744..1811)
                     /locus_tag="VKJ77_20405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47692.1"
                     /translation="MALLEIENLSKTFGTNTVLHQFDMQIERGEFITFLGPSGCGKTT
                     VLRMIAGFETPTRGTIKLAGRDVTHVRTRQRKVGMVFQSYALFPNMTVADNIGFGLKV
                     LGRPQAEIKARVKEMLELIKLPHLADRYPWQMSGGQQQRVALARALANKPQVLLLDEP
                     LSALDAKIRVSLREDIRTLQRELGITSIFVTHDQEEALSISDRIVVMNEGRVEQIGTP
                     SEIYNFPRTRFVASFVGTLNLLSGQVVDPASGKIVVGGQELRTSHALNSADAGKQRML
                     AVRPEAIVLEAPANGRNTLAATVEEVNFLGAVVRIRTRVDQSVISLDIFNDPNRRLPE
                     RGQPVALGFSHENLLVLEEGA"
     gene            complement(1826..2659)
                     /locus_tag="VKJ77_20410"
     CDS             complement(1826..2659)
                     /locus_tag="VKJ77_20410"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47693.1"
                     /translation="MSTVTTVTPTPDNKVRAQTRAGAWIAMVIGALYFLLPLAATVEF
                     SLKMRRGEYSFDAYRVVLTDPHFQASFGYSIMMGVFAIVLGVLLVVPTAYWVQLRLPK
                     LRPLIEFITLLPLVIPAIVIVFGYLHIYNSSSFLPLTGNERATDFLLICGYVTLCLPY
                     MYRSVDAGLRAVDVRSLTEAAECLGANWPTILFKIIFPNVRSGILSGAFLTFAVVIGE
                     FTLASLLNRPAFGPYLQLIGANRAYEPSALAIIAFAITWASMGLIQVFGSARALAGQK
                     I"
     gene            complement(2656..>2822)
                     /locus_tag="VKJ77_20415"
     CDS             complement(2656..>2822)
                     /locus_tag="VKJ77_20415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acriflavin resistance protein"
                     /protein_id="HMC47694.1"
                     /translation="SLNIVPIVLYAQIRGDVLHNENLGYALALGMVLVTGLSNGGYIW
                     LRSRAERGRR"
BASE COUNT          612 a          892 c          827 g          491 t
ORIGIN      
        1 gtaagcccgg tgcgtaccca cgatgcgccc gatcagataa ccatccgacg cacacgcatt
       61 cacacgctgg gcgccgttcc acacgatttt gtactgctcg tcctgcaaac ggatagctga
      121 cggatcgaac tggggttgcg gcgccccggc ggtcttgccg ccttcacgtg cctgttccat
      181 ctcgaggcga ttccaggtgt aggcataacc gtactggaca ccgtcggcga aggcgtcgag
      241 atcgcacacc tgcttgggcg gcgtaatgga gacttcggtc cggtagccac tgggaccgcc
      301 gacttcaatg cgttgtgggg cgggagcgcc ggtggaatcg acctgcgcgg aacgtctcgt
      361 gggaagttgc ggtttggcga cggccaccgg aacggcgctc gacgctggca gcgcgctgcc
      421 ggcgctgccg tcagtaggca gcggcgcgca ggcgccaaga actagaatcg atgcggcgag
      481 ggaaacgcct aaaaccttca aatgggtgct gaaaatcacg cttttgctgt ccgtctcaaa
      541 ataaaccgag cactacctta acattttgag acggacgtgt agattgtgcc gctttttgga
      601 aacgggactc ggacggaaaa aacgggggcg tgccggcgct gaaatacgtc gcggccacgg
      661 tttcgcacaa gaaaaaggcc gcttgcgcaa tgcaaagcgg ccttctttga aacaacccgg
      721 tcatcgctac ccaactccga cgatcaagcc ccctcctcca gcaccagcaa attctcatgc
      781 gagaacccga gcgccacggg ttgcccgcgc tccggcaagc gccgattcgg gtcgttgaat
      841 atatcgaggg aaatcacgga ctgatccacg cgtgtcctga tccgcaccac ggcaccgagg
      901 aaattgacct cctcgaccgt cgccgccagc gtattgcgcc cgttcgccgg tgcttccagc
      961 acgattgcct cgggccggac cgcgagcatc cgctgcttgc cggcatcggc ggaattgagc
     1021 gcgtgcgagg tccgcaactc ctggccaccg accacgatct tcccgctcgc cggatccacc
     1081 acctgccccg acaacaagtt caacgtgccg acaaacgacg ccacgaaacg cgtacgcgga
     1141 aagttataaa tctccgacgg cgtgccgatc tgctctaccc gcccttcgtt catcaccacg
     1201 atccgatccg aaatcgacag tgcctcttcc tgatcgtgcg ttacgaaaat cgaggtaatg
     1261 ccgagctcgc gctgcagggt ccgaatgtcc tcacgcaacg agacgcgaat cttcgcatcg
     1321 agagccgaca ggggttcgtc gagcagcagt acctgcggtt tgttcgccaa cgcgcgcgca
     1381 agcgccaccc gttgttgctg accgccggac atctgccacg gataccggtc ggccaagtga
     1441 ggcagcttga tcagctcgag catttccttc acccgcgcct tgatctcggc ctgcggccgc
     1501 cccaacacct tcagcccgaa gccgatgttg tccgccaccg tcatgttcgg aaacagcgcg
     1561 tacgactgga acaccatgcc gaccttgcgt tggcgcgtgc gcacatgggt gacgtcgcgc
     1621 ccggcgagct tgatcgtgcc gcgcgtgggc gtttcaaagc cggcaatcat tcgcagcacc
     1681 gtcgtcttgc cgcaacccga gggcccaagg aaggtgatga attcgccacg ctcgatttgc
     1741 atatcgaact gatgcagcac ggtgttcgtg ccgaacgtct tggaaaggtt ttcgatctcg
     1801 agaagtgcca tgacaagcct gccctttaaa ttttttgtcc ggcgagagcg cgcgccgagc
     1861 cgaagacctg aataagcccc atcgaggccc acgtaatagc aaacgcaatg atcgcgagcg
     1921 ccgaaggttc atacgcccgg ttcgcgccga tcaactgcag atacggtccg aacgccggac
     1981 ggttgagcaa gctcgccagc gtgaattcgc cgatcaccac cgcgaacgtc aggaacgcgc
     2041 ccgacaggat cccggaacgc acgttcggaa agatgatctt gaagaggatg gtcggccagt
     2101 tcgcgcccag gcattcggcg gcttcggtca gcgagcggac atcgacggcg cgcaagcccg
     2161 catccaccga gcggtacatg tagggcaaac acaacgtgac ataaccacag atcagcagga
     2221 aatcggtcgc ccgctcgttg ccggtgagcg gcaagaacga actgctgttg tagatatgca
     2281 gatagccaaa cacgatcacg atggccggta tcaccagcgg cagcagcgtg atgaactcga
     2341 tcagcggacg cagcttcggc aagcgcaact gcacccagta agcagtcggg acaaccagca
     2401 gcaccccaag cacgatggcg aacacgccca tcatgatgga gtagccgaac gacgcctgaa
     2461 aatgcggatc ggtgaggaca acgcggtaag cgtcgaagct gtattcaccg cgacgcatct
     2521 tcaggctgaa ctctaccgtt gccgcgagcg gcaacaggaa gtacagcgcg ccgatgacca
     2581 tcgcgatcca cgcgcccgcg cgcgtctggg cccggacctt gttgtccgga gtcggagtga
     2641 ctgtggtgac ggtgctcatc gacggcccct ttcagcgcgt gagcgcaacc agatataacc
     2701 gccgttggac aagccggtca cgaggaccat gccgagcgcc agcgcataac cgagattttc
     2761 gttgtgcagc acgtcgccgc gaatctgcgc gtacagcacg atcggcacga tgttcagtga
     2821 ac
//
LOCUS       DATGBK010001464         2063 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_178939, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001464 DATGBK010000000
VERSION     DATGBK010001464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178939"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..948
                     /locus_tag="VKJ77_20420"
     CDS             <1..948
                     /locus_tag="VKJ77_20420"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012406214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC47695.1"
                     /translation="YARWSRSSSRLWPGLAAALLEETGVDVSLKQPGGFHLCFSDEEM
                     AEREKRLSTLQAELGGEYPYQLLDAQELRERLPAVGPEVIGASYTPMDGHVNPLKLLR
                     ALHDAMQRRGVKFVNDQDIGRIVPETNGFAVHGKNAVWRAPKVVLSAGLGNRALSAQV
                     GLHAPVAPNRGQVLVSERVAPFLHYPTINVRQTDEGSVQFGDSMEEVGYNDFTTADVL
                     STIARRGVRAFPLLKNVRLVRTWAALRVYSPDGFPIYEQSLQYPGAFVVTCHSGVTLA
                     AAHAMRIAPWITGGPIPDELASFRGGRFLAADHTTNHAH"
     gene            1060..1437
                     /locus_tag="VKJ77_20425"
     CDS             1060..1437
                     /locus_tag="VKJ77_20425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC47696.1"
                     /translation="MTSKPLFRVLSPATGTDAQAEAEPTILQIWFNDQPLSVPGGRSV
                     AAALLAAGVQRFRATPVSGAPRAPYCMMGACFECLVEIDGMPSRQSCLVTVQDGMRIH
                     SQEGARDLPPLSDVNPMENAHGR"
     gene            1427..>2063
                     /locus_tag="VKJ77_20430"
     CDS             1427..>2063
                     /locus_tag="VKJ77_20430"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HMC47697.1"
                     /translation="MAANPVDVAVIGAGPAGLAAATQAARAGLSVVLLDEQDAVGGQI
                     YRAIECSDAQRRAILGPDYAAGAALASEFARSGARYVPNASVWQVTRERTVHYLKDGK
                     VSSFEARRVVLATGALERPFPIPGWTLPGVMTAGAAQILLKSAGEVPAEPPILVGCGP
                     LLYLLGWQYVRAGVPIRALVDTTRHEDRWRAKRHMLSALRAWPYLSKGLQLM"
BASE COUNT          338 a          645 c          680 g          400 t
ORIGIN      
        1 tacgcacgct ggtcgcgcag ttcgtcgcgg ctgtggccgg gactcgcggc ggcgttgctg
       61 gaagaaacgg gtgttgatgt atcgctgaag cagccgggcg gtttccacct gtgtttctcc
      121 gacgaagaaa tggccgagcg cgagaaacgt ctgtccacgc tgcaggcaga acttggcggc
      181 gagtatccct atcaactgct cgacgcgcag gagttgcgcg agcgcctgcc ggctgtcgga
      241 cctgaagtga tcggcgcaag ttatacgccc atggacggcc acgtgaatcc gctcaagctg
      301 ttgcgtgcac tgcacgacgc catgcagcgg cgcggcgtga agttcgtcaa cgaccaagat
      361 atcggccgca tcgttcccga gacgaacggc ttcgccgtgc acggcaagaa cgctgtgtgg
      421 cgtgcgccga aggttgtgct gtcagcgggt cttggcaacc gagcgctcag tgcccaggtg
      481 ggtttgcatg cgccggttgc gccgaatcgc ggacaggtgc tggtcagtga acgggtcgcg
      541 cccttcctgc attacccgac catcaatgtg cgccagaccg atgaaggctc ggtgcaattc
      601 ggcgattcaa tggaagaggt cggctacaac gacttcacca cggccgacgt gctctcgacc
      661 atcgcgcggc gcggcgtgcg tgcgtttccc ttgttgaaga acgtgcggct ggtacgcacg
      721 tgggcggcgc tgcgcgtcta cagccccgac ggcttcccga tctacgagca gtcgctgcag
      781 tatcccggcg cgttcgtcgt gacgtgtcac agcggcgtga cgctggcagc agcgcatgcg
      841 atgcgcatcg ctccatggat cacaggcggg ccgatccccg atgaacttgc ttcgttccgg
      901 ggcggccgtt ttctcgccgc tgatcacacg accaaccatg ctcattagcc gcttcaacgt
      961 ctcgattgca tcggctccgg caacaacggt tcgccgttgc ctgttccccg cgatgcatcc
     1021 tgaacgccga cattccgctt tgcttcgacc tgtccgacta tgacttcaaa accgctattc
     1081 agagtgctct cgccggccac cggcaccgat gcccaggccg aggccgagcc caccattctc
     1141 cagatctggt ttaacgacca gccgctcagc gtgccaggcg gacgctcggt tgccgccgca
     1201 ctgctggccg ccggagtcca gcggtttcgt gcgacgccgg tgtccggtgc gccacgtgcg
     1261 ccttattgca tgatgggcgc gtgtttcgaa tgcctcgtcg agatcgacgg catgccgagt
     1321 cgccagagtt gtctagtgac ggtgcaggac ggcatgcgta ttcattcgca agagggcgcg
     1381 cgcgatctgc cgccgctgtc ggatgtgaat ccgatggaga acgctcatgg ccgctaatcc
     1441 tgtcgatgtc gccgtgattg gtgccggacc tgccgggctc gccgccgcga ctcaagctgc
     1501 gagagcgggg ctgtccgtgg tcctgctgga tgaacaggac gcagttggcg gacagatcta
     1561 tcgcgcgatt gaatgcagcg acgcgcagcg ccgtgccatc ctcggcccgg actatgccgc
     1621 cggtgcggca ctggcgagcg agttcgcgcg ttcaggcgcg cgatatgtgc cgaacgcgtc
     1681 ggtctggcaa gtcacgcgcg agcgtacggt gcactatctc aaggacggca aggtgagcag
     1741 cttcgaggcc cggcgcgtgg tgctcgcgac cggtgcgctc gaacgtccct ttccgatccc
     1801 cggctggacc ctgcccggcg tgatgaccgc gggtgccgcg cagatcctgc tgaaaagcgc
     1861 gggtgaagtg ccggccgaac cgccgatact ggtcggttgc ggaccattgc tttacttgct
     1921 cggatggcag tatgtccgcg cgggtgtacc cattcgtgcg ctggtggata ctacgcgtca
     1981 cgaggaccgc tggcgcgcca agcggcacat gttgtccgct ttgcgagcgt ggccgtatct
     2041 gagcaagggc ctgcagttga tgc
//
LOCUS       DATGBK010001465         1682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_341218, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001465 DATGBK010000000
VERSION     DATGBK010001465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341218"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..825
                     /locus_tag="VKJ77_20435"
     CDS             <1..825
                     /locus_tag="VKJ77_20435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC47698.1"
                     /translation="VGKHFGALKVLDDVSLAVRKSEVTCIIGPSGSGKSTLLRSLAFL
                     EEYSEGEIFIEGELIGYVTDRNGRRVRAPQAEINRVRRNVGMVFQQFNLWPHMTAVEN
                     VAEALVRVRKLPKAEARKRALAMLDKVGLADRADNHPARLSGGQQQRVAIARALAMEP
                     HIMLFDEPTSALDPELVGEVLQVMKNLANDGMTMVIVTHEMGFAAQVADTVVFIDHGK
                     IEAQGSPEDVFHNAQQPRLKQFLQNYLDRNAFWARREEPSASAVHVSTEPAGYNET"
     gene            855..1616
                     /gene="hutC"
                     /locus_tag="VKJ77_20440"
     CDS             855..1616
                     /gene="hutC"
                     /locus_tag="VKJ77_20440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017778306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine utilization repressor"
                     /protein_id="HMC47699.1"
                     /translation="MNTTSLSNPASATAPLARYERVKEHIRTRIVSGEWRPGDRIPSE
                     MTLVGELGVSRMTINRALRELTEQGVLTRFSGVGTFIAEEKPQSTLLMIAHIGDEIRA
                     RGHEYGYAMVHAAREAAASDVSAALGLAPGASVFHVVCVHRENGVPVQLEDRYVNPDV
                     APHFLEQDFATVRPSEYLFNNVPAHEVEHVVDAVLPSRADAKLLEIGPDQPCLTLVRR
                     TWANNVAVTFARFVHPGTRYRLGCRFSADNMQRQS"
BASE COUNT          337 a          494 c          553 g          298 t
ORIGIN      
        1 gtcggcaagc atttcggcgc gctgaaagtg ctcgacgatg tctcgctcgc cgtgcgcaag
       61 tcggaggtga cctgcatcat cggaccatcg ggttcgggga aaagcacctt gctacgctcg
      121 ctcgcgttcc tcgaggaata cagcgagggc gagatattca tcgaagggga attgatcggc
      181 tatgtcaccg accgcaacgg ccggcgcgtg cgtgcgccgc aggccgagat caatcgcgtg
      241 cggcgcaacg tgggcatggt gttccagcag ttcaacctat ggcctcatat gacggctgtt
      301 gaaaacgtgg ccgaggcgct ggtgcgcgtg cggaagttgc ccaaggctga ggctcgcaag
      361 cgggcgctgg ccatgctcga caaggtcggt ctcgccgacc gcgcggacaa tcatccggcg
      421 cggctctccg gcgggcagca gcaacgtgtg gcgattgccc gcgcgctggc catggaaccg
      481 cacatcatgc tgttcgacga acccacctcc gcactcgatc ccgagctggt cggcgaagtg
      541 ctgcaagtga tgaagaacct cgccaacgat ggcatgacga tggtgatcgt cacgcatgaa
      601 atgggcttcg ccgcgcaggt cgcggatacg gtcgtcttca tcgatcatgg caaaatcgag
      661 gcgcaaggat cgcccgagga cgtgtttcac aacgcgcagc agccgaggct taaacagttc
      721 ctgcagaact atctcgaccg gaatgcgttc tgggcgcggc gcgaggaacc gtcggcgagt
      781 gcggtccacg tgagtacaga accagcggga tataacgaaa cctaagccat acctgcgcca
      841 tacctgagcg agacatgaat acaaccagcc tttcgaaccc tgcatccgcc accgcgccgc
      901 tcgcgcgcta cgagcgtgtg aaggaacata tccgcacgcg catcgtctcc ggcgaatggc
      961 ggcccggcga ccggattcca tcggagatga ccctggtggg cgagctgggc gtatcgcgca
     1021 tgacgatcaa ccgcgcgtta cgcgaactca cggagcaagg cgtgctgacg cgcttctcag
     1081 gcgtggggac gtttatagcg gaagaaaaac cgcagtcgac gctgctgatg atcgcgcaca
     1141 taggcgatga aattcgcgca cgcggacacg agtacggcta tgcgatggtg cacgctgcgc
     1201 gcgaggcggc ggccagtgat gtatcggcgg cactcggact cgcgccgggc gcgtcggtat
     1261 tccatgtggt gtgcgtgcat cgcgagaacg gcgtgccggt gcagctcgaa gaccgttacg
     1321 tgaatcccga tgtcgcgccg cattttcttg agcaggattt cgcgacggtg cggccttcgg
     1381 agtatctgtt caataacgtg ccggcacacg aggtcgagca tgtggtggac gcggtgctgc
     1441 cgtcacgcgc agatgcgaaa ctgcttgaga tcggtccgga ccagccgtgt ctcacgctcg
     1501 tgcggcgaac ctgggcgaat aacgtggcgg tgacgttcgc gcgcttcgtg catccgggaa
     1561 cgcggtatcg gctgggatgc cggttcagcg ccgacaacat gcagcggcaa agttaatcgc
     1621 cgctgcggtc atgcacattt aagtttaagc caccccttcc gatgcgaagt gcagcgggca
     1681 ga
//
LOCUS       DATGBK010001466         1828 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_156020, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001466 DATGBK010000000
VERSION     DATGBK010001466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156020"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..562)
                     /locus_tag="VKJ77_20445"
     CDS             complement(<1..562)
                     /locus_tag="VKJ77_20445"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47700.1"
                     /translation="MNIRHLALAAAGASAFIDMYATQPLLPEFRLQFHASEAAVSATV
                     SALIFATAIAALFVGPIADRIGRKRIIVGSIIGLGIATLATSTATSLSSLVAWRFVQG
                     LFMPGIFTVTLAYIAEEFPAGVGGAAVGAYVGGNVFGGFFGRYLAALVDSHSNWHVVF
                     VVLGCLNFVGATIVIFALPRSKNFKKA"
     gene            complement(559..909)
                     /locus_tag="VKJ77_20450"
     CDS             complement(559..909)
                     /locus_tag="VKJ77_20450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47701.1"
                     /translation="MKRQIAGAILAVVTGGYMLADGLHAFMTGAYYGARLGPWATVVR
                     AIDIDPYSDLMKTIFVCFGALWLCSAMFWLRRAAPRFRAVMAVCTLWYFPVGTLIAIL
                     ELAIQASVDRKTVA"
     gene            1011..>1828
                     /gene="tsaD"
                     /locus_tag="VKJ77_20455"
     CDS             1011..>1828
                     /gene="tsaD"
                     /locus_tag="VKJ77_20455"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR00329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HMC47702.1"
                     /translation="MLLLGIETSCDDTATAVVRDGRSVLSNVSTNQDAFHEKYGGIVP
                     EIASRRHVALLSAAVDDALGRANTTLKDIDGIAVTTGPGLIGSLVVGVAAAKALAFAT
                     GKPLYAVNHLHGHIFAAFLDSDREPEYPFLALLVSGGHSQLVEVESPTDMRVIGKTRD
                     DAAGEAFDKTARLLGLPFPGGPALERLARDGNPKTLNFPRHKPDPGTLDMSFSGVKTS
                     VRYFLENDAGQTSRADVAASFQSAVVDVLIDRVTRALDSREYTAIVLSGGVAANS"
BASE COUNT          420 a          579 c          498 g          331 t
ORIGIN      
        1 ttgccttctt gaaattcttc gagcgcggca acgcaaagat aacgatcgtc gcgcccacaa
       61 aattcagaca acccagcacg acgaagacga cgtgccaatt gctgtggcta tcgacgagcg
      121 ccgctaagta gcgcccgaaa aatccgccga agacattgcc gccgacatat gcacccacgg
      181 ccgcaccgcc cacaccggcc ggaaattcct cggcaatgta cgcaagtgtt accgtaaaga
      241 taccgggcat aaaaagcccc tggacgaagc gccaagcaac cagtgacgag agcgacgttg
      301 ccgtcgacgt ggcgagcgtt gcaattccca agccgataat cgatccaacg atgatgcgct
      361 tgcggccaat ccggtccgca atcggaccca cgaacagcgc cgcgatcgcc gtcgcaaata
      421 tcagtgcgga aaccgttgcg ctaacggccg cctcggacgc atgaaactgc aaacgaaatt
      481 caggcaacaa cggctgcgtc gcgtacatgt cgataaacgc actcgcacct gctgcggcaa
      541 gcgcaagatg tcggatgttc acgctacggt cttacggtcc acgctcgctt gaatggctag
      601 ctccaaaata gcgatcaacg taccgaccgg aaaataccac aacgtgcaaa ccgccatgac
      661 ggcccgaaaa cgcggtgctg cacgccgtaa ccaaaacatc gcgctacata accagagcgc
      721 gccaaaacaa acgaatatcg ttttcatcag gtcagagtac ggatcgatat cgatcgcccg
      781 tacgaccgtt gcccatgggc cgagccttgc gccgtagtac gcgccggtca taaacgcgtg
      841 caacccatca gccagcatgt agccgccggt tacgactgcg agtatcgccc cggcgatctg
      901 ccgtttcacc gaaatctcaa tggctgcatg tcgcgtgcag ttcggcagcc cgctcggccg
      961 aaccatcttt cgtgcaaccc gggcatggcc gcaggtggtc gcacagcgcg atgctgcttc
     1021 tcgggatcga gacctcctgc gatgatactg cgaccgccgt tgtgcgtgac gggcgcagcg
     1081 tgctttcgaa cgtctccacg aaccaagatg cgtttcacga aaaatatggt ggcatcgtgc
     1141 ccgagatcgc aagtcgccgg catgtcgcgt tactatcagc ggcagtcgac gatgcattgg
     1201 gtcgtgcaaa cacgaccctc aaagacattg acggaatcgc cgttacgaca ggtcccggat
     1261 taatcggcag ccttgtcgtc ggcgtggcgg ctgccaaggc gctcgcgttc gcgacgggta
     1321 agccgctcta tgcggtcaac catttacacg gacatatctt cgcagcgttc ctcgatagcg
     1381 atcgcgagcc ggaatatccg ttcctcgcgc tactcgtgtc cggcggccat tcacaacttg
     1441 tcgaagtcga aagcccgacc gatatgcgcg ttatcggaaa aacgcgcgat gacgcagccg
     1501 gggaagcatt cgacaaaacg gctcggcttc tcggcttgcc gtttccgggc ggcccggcac
     1561 tcgagcgcct tgcgcgcgac ggcaatccga agacgctcaa ctttccgcgc cataaacccg
     1621 atcccggaac gctcgatatg tcgttctccg gcgtaaagac gtcggtccgg tattttctgg
     1681 aaaacgacgc gggccaaacc agccgcgccg acgttgccgc ctcgtttcag tcggccgtcg
     1741 tcgatgtgct catcgatcgc gtaacgcgcg cacttgattc acgcgagtat acggcaatcg
     1801 ttctaagcgg cggcgttgcc gcaaactc
//
LOCUS       DATGBK010001467         5102 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_178966, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001467 DATGBK010000000
VERSION     DATGBK010001467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5102
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178966"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..288)
                     /locus_tag="VKJ77_20460"
     CDS             complement(<1..288)
                     /locus_tag="VKJ77_20460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbY family RNA-binding protein"
                     /protein_id="HMC47703.1"
                     /translation="MPALKLSPAQRADLRSLAHALKPVVLVGGEGLTEAVLAEIEVHL
                     AAHQLIKIRVFGDDREARVAAYAEICDRLNAAPIQQIGKLLVVWRPESDEAA"
     gene            696..1358
                     /locus_tag="VKJ77_20465"
     CDS             696..1358
                     /locus_tag="VKJ77_20465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HMC47704.1"
                     /translation="MAKNRFNYSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDK
                     LIKPGQIIVDLGSTPGSWSQYARNQLAKGSKRGETREGGIDGKIIALDLLPMEPIADV
                     IFIQGDFREDSVLDQLKEIVGDHQVDLVISDMAPNLSGVASADAARMEHLCDLALDFS
                     QNHLKPEGALLVKCFHGSGYSQIVEKFKQQFKIVAPRKPKASRDKSSETFILGRQLKR
                     RD"
     gene            1556..3451
                     /gene="ftsH"
                     /locus_tag="VKJ77_20470"
     CDS             1556..3451
                     /gene="ftsH"
                     /locus_tag="VKJ77_20470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020202885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HMC47705.1"
                     /translation="MNNNMFSKAAVWLVIALVLFTVFKQFDKPRVQEGVSYSQFMDDA
                     KTGKVKTVTVQGRNLTVTPADGQKYQIVSPGDIWMVGDLMKYGVQVSGKADDEPNALV
                     SALYYLGPTILIIGFWFFMMRQMQGGGKGGAFSFGKSRARLIDENNNAINFTDVAGCD
                     EAKEEVSELVDFLRDPQKFQKLGGRIPRGVLLVGPPGTGKTLLARAIAGEAKVPFFSI
                     SGSDFVEMFVGVGAARVRDMFEQAKKHAPCIVFIDEIDAVGRHRGAGMGGGNDEREQT
                     LNQMLVEMDGFEANSGVIVIAATNRSDVLDKALLRPGRFDRQVYVGLPDIRGREHIMK
                     VHLRKVPISNDVDASVIARGTPGFSGADLANLVNEAALFAARRGKRIVEMADFEDAKD
                     KIFMGPERKSAVMREEERRNTAYHESGHAVVAKLLPHADPVHKVSIMPRGWALGITWQ
                     LPEHDRVNLYRDKMLEEIAILFGGRAAEEVFLNSMSTGASNDFERATKMARDMVTRYG
                     MSDVLGTMVYVDTEQDGMFGKMASKTVSEATQQKVDAEIRRILDDQYGLARKLLEDNR
                     DKVEAMTKALLEWETIDAEQISDIMGGRPPRPPKNLPPPSSDPSSGGGNTGAEVKPGN
                     ATAPASA"
     gene            3657..4550
                     /gene="folP"
                     /locus_tag="VKJ77_20475"
     CDS             3657..4550
                     /gene="folP"
                     /locus_tag="VKJ77_20475"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010092666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HMC47706.1"
                     /translation="MLFSPLPNSFRAVAEPLQCGRFALTFERPLVMGILNVTPDSFSD
                     GGRFVARDAALAQAAEMIRDGADMIDIGGESTRPGAPPVPLDEELERVIPVIEALRSA
                     GVPLSIDTYKPAVMRAALNAGADMVNDIWGLRREGALDAVRDSTCGVCVMHMLGEPQT
                     MQMHEPVYRDVVAEVREFFEERLRTLAAGGIRSERICLDPGFGFGKSVIDHNYALLAH
                     FAKTRPANSRVPLLAGMSRKSMLGAVTGRTQPVERVAASVAAVVCAAERGAAIVRVHD
                     VAATVDALKVWQAVRAAANPT"
     gene            4688..5083
                     /gene="glmM"
                     /locus_tag="VKJ77_20480"
                     /pseudo
     CDS             4688..5083
                     /gene="glmM"
                     /locus_tag="VKJ77_20480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181021.1"
                     /note="catalyzes the conversion of glucosamine-6-phosphate
                     to glucosamine-1-phosphate; incomplete; partial in the
                     middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
BASE COUNT         1059 a         1372 c         1649 g         1022 t
ORIGIN      
        1 ggcagcttcg tcgctttccg gccgccacac gacaagcagc ttgccgattt gctggatcgg
       61 cgccgcgttc aaccggtcgc agatttcggc gtaagctgcg acgcgggctt cgcggtcatc
      121 gccgaaaacg cggatcttga tgagctggtg tgcagcaagg tgcacctcga tctcggccag
      181 cacggcctcg gtcagccctt cgccgccaac gagtacaacg ggcttgagcg cgtgagccag
      241 ggagcgcagg tcggcgcgtt gggcgggaga aagtttgaga gctggcatga gaagtaacgg
      301 actcgactaa aatgagaggc gccgtagcgt aaaagcggct aaacggtcgc gattgcaaaa
      361 caaagacggg cagggcggga cgccttgctc aagaaaatga cggacggcgc gaggcggtgc
      421 ggcgagcaac ggacttgatt ttaacgaatc tttaatcgcc ggagctcgga cgccgcccct
      481 tgccagataa gcctgaagca cattatcagc atcgggcctc cggcaaacgt cgctggcaaa
      541 cacagggcgc aacggcgccg gtatcggcta gctactttgg ctgtccacat cgacgaaggc
      601 tgcttcgtaa gttgcccagc aaatgagcag cagcccgaat tagacgcgta ttatccgcta
      661 aaagcacagc ttcacgcagc aagagttcat tcttaatggc aaaaaaccgc ttcaattact
      721 cgtggctgca cgaccacatc aacgacccgt acgtgaagct cgcgcagcgc gagggctacc
      781 gggcgcgcgc ggcatacaag ctgaaggaga tcgacgagca ggacaagttg atcaaaccgg
      841 gccagatcat tgtcgacctg ggctcgaccc ccgggagctg gagccagtac gcgcgcaacc
      901 agttggctaa agggtccaag cgtggtgaaa cgcgcgaagg cgggattgat ggcaagatca
      961 tcgcactcga cttgctgccc atggagccga ttgccgacgt gatcttcatc cagggcgact
     1021 tccgcgaaga ctcggtactg gaccaactga aggaaatcgt cggagaccat caagttgatc
     1081 ttgtaatttc cgacatggcc cccaacctct caggggttgc cagcgcggat gcagcgcgaa
     1141 tggaacatct gtgcgatctg gcgctggact tctcgcagaa tcatctgaag ccggaaggcg
     1201 ccttattggt caaatgtttt catggcagcg gctatagtca aatagtggag aagttcaagc
     1261 agcaatttaa aatcgtcgcg ccgcgcaagc cgaaggcgtc gcgcgataaa tcgtccgaaa
     1321 cgtttatttt gggcaggcaa ctcaagcgtc gggattgaga gttgcgggtg gaatcgccgc
     1381 cggggaccgg gtgtctcggc aggctttttg ccggatatgt ccaaacaatc gggtcctgac
     1441 cgctatcttc acgctagtta aaggctatag caggggtttg cggtctggat tagaatgctt
     1501 tggtggtgcc gcaaggcgaa tgtaggcgcc cgtctatgag tgaaggagtg gtgctttgaa
     1561 caacaatatg ttctctaagg cagcggtgtg gctggttatc gcactggtgc tgttcacggt
     1621 gttcaagcag ttcgacaagc cccgcgtcca ggaaggtgtt tcgtattcgc aattcatgga
     1681 cgacgcgaag accggtaagg tcaagacagt taccgttcag ggtcgtaatc tcaccgttac
     1741 tcccgcagac ggtcagaaat atcaaatcgt gtcgcctggc gatatctgga tggtcggcga
     1801 cttgatgaag tacggcgtcc aggttagcgg caaggccgac gatgaaccga acgcgcttgt
     1861 ttccgcgctg tattacctcg gaccgacgat cctgatcatc ggtttctggt tcttcatgat
     1921 gcggcaaatg cagggcggcg ggaaaggcgg agcattttcg ttcggcaagt cgcgagcgcg
     1981 gctgatcgac gagaacaaca acgcgatcaa ttttaccgat gtcgcaggct gtgacgaagc
     2041 gaaggaggag gtctccgagc tagtcgactt cctgcgtgat ccgcagaaat tccagaagct
     2101 gggtggacgc attccccgcg gcgtgctgct ggtaggccct ccgggtacgg gtaagacgtt
     2161 gctggcgcgc gccattgccg gcgaagcgaa agtaccgttc ttcagcatct cgggttcgga
     2221 cttcgttgaa atgttcgtgg gtgtgggtgc ggctcgagtg cgcgacatgt tcgagcaggc
     2281 caagaagcac gcaccgtgta tcgtgtttat cgacgaaatc gatgctgtgg gccgtcatcg
     2341 cggcgccggc atgggcggcg gtaacgacga acgcgaacag acgttgaatc agatgctcgt
     2401 ggaaatggac ggcttcgagg cgaactccgg cgtgatcgtg atcgccgcga ccaaccgctc
     2461 cgacgtgctg gacaaagcgt tgctgcgtcc gggccgtttc gaccgccagg tgtatgttgg
     2521 actgccggat atccgcggtc gcgaacacat catgaaggtc cacctgcgta aggtgcctat
     2581 ttcgaacgac gtcgacgctt cggtgatcgc acgtggcacg ccgggcttct cgggcgccga
     2641 tctggcgaac cttgtgaacg aagctgcgct gttcgcagcg cgtcgtggca agcggattgt
     2701 cgaaatggcg gactttgaag acgcgaaaga caagatcttc atgggtccgg aacggaagtc
     2761 ggctgtgatg cgcgaagaag agcgtcgcaa tacggcttat cacgagtcgg gtcacgcggt
     2821 ggtggcgaag ctgctgcctc acgcagatcc ggttcacaag gtctccatca tgccgcgtgg
     2881 ctgggcgctg ggcatcacgt ggcagttgcc ggagcatgat cgcgtgaatc tgtatcgcga
     2941 caaaatgctt gaggaaatag ccatcctgtt tggcggccgc gcagcggagg aagtgttcct
     3001 gaactccatg tcaacgggtg cttcgaacga cttcgagcgt gcgacaaaga tggcacgtga
     3061 catggtgacg cgttacggta tgtcggatgt gctcggcacg atggtgtatg tcgataccga
     3121 gcaggacggc atgtttggca agatggcgtc aaaaacggta tccgaagcca cgcagcaaaa
     3181 ggtcgatgct gaaattcgcc ggattctcga cgatcaatat ggcctcgccc gcaagctgct
     3241 ggaagataac cgcgacaagg tcgaagccat gacgaaggcg ttgctggagt gggaaaccat
     3301 cgacgcagag cagatcagcg acatcatggg cggtcgcccg ccgcgtccgc cgaagaatct
     3361 gccgccgccg tcaagtgatc cgtcgtcggg tggtggaaac accggcgcgg aagtcaaacc
     3421 gggtaacgcc acggctcctg cttcagcctg acgcgatcct gaggcaatac agaaggggct
     3481 ggtgtgtttt cacaccagcc cttttccgtt ggggctcgct tttttgagac cacacggagc
     3541 aggttcaccg gtttggctgg cgattgcttg agctccgccg tatgcaatcc gaatggcgga
     3601 ccgatcggcg ccaccaatct aaaaacgtaa cttcttcatc gcgtcgctgg accactatgc
     3661 tgttttcacc tctcccgaac agctttcgag ctgttgctga accgcttcaa tgcggccggt
     3721 tcgcgttgac cttcgagcgc ccgttggtca tgggcattct caatgtcacg ccggattcgt
     3781 tttcagatgg tggtcgtttc gtcgcgcgtg acgcggcgct cgcacaggcc gccgagatga
     3841 ttcgcgacgg tgccgacatg atcgatattg gcggtgagtc aacccgcccg ggtgcgccgc
     3901 ccgtcccgct ggacgaagag ctcgaacgcg tgatcccggt aatcgaagcg ttgcgctcgg
     3961 cgggtgtgcc gctttccatc gacacctaca aacccgcggt catgcgcgcc gcgctgaacg
     4021 ccggcgcgga tatggtcaac gacatctggg gcttgcgtcg tgaaggcgcg ctcgatgcag
     4081 tcagggacag cacgtgcggg gtctgcgtca tgcatatgct tggcgagccg caaaccatgc
     4141 agatgcatga gcctgtgtat cgcgatgttg tggcggaggt gcgggaattt ttcgaggaac
     4201 ggctgcgtac gctggcggcg gggggaatcc gttcggagcg gatctgcctc gatcccgggt
     4261 ttgggttcgg caagtccgtg atcgatcata attacgcttt gctggcgcat ttcgccaaga
     4321 cacggcccgc gaattcgcgg gtccccttac tggctggaat gtcgcgcaag tcgatgcttg
     4381 gcgcggtgac ggggcgaaca caaccggtcg agcgcgtggc ggcaagcgtg gcggcggtgg
     4441 tgtgcgcggc cgagcgaggc gcggccattg tgcgcgtgca cgacgtcgcg gcgactgtcg
     4501 atgcattgaa ggtatggcag gcggtgcgtg ctgccgccaa tccgacttga cgcacgaccc
     4561 aacgcgcgac ttaacgcacg actcaatgag cgacgttttg acggcatagg cattgctgcg
     4621 agcgcctcga gagtattgga attcacagtt cgcgcttaat tttttgcgca aggataaaaa
     4681 cgaaacaatg gcacgtcgat attttggaac agatggtatt cgcggcaagg tcggcgaggc
     4741 tccgatcacg cctgatttcg tgttgcggct gggttatgca gccgggaaag tactggcggg
     4801 agcggatcga tgggcgcagc gcggcagccg cccgacggtg ctgatcggca aggacacgcg
     4861 ggtctcgggg tacatgctgg aagcggcatt ggagtcgggt ttttcggcgg cgggcgttga
     4921 cgtcatgctg gccgggccga ttccgacgcc gggcgtcgcc tacctgacgc gggctctgcg
     4981 cctggcggcg ggtgtggtga tcagcgcatc gcataacccg tactacgaca acggcatcaa
     5041 gtttttctcc gccgatggca acaagctccc ggacgaagtc gagctgtaga ttgaggcgca
     5101 ac
//
LOCUS       DATGBK010001468         2809 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_132786, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001468 DATGBK010000000
VERSION     DATGBK010001468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132786"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(147..935)
                     /gene="icmH"
                     /locus_tag="VKJ77_20485"
     CDS             complement(147..935)
                     /gene="icmH"
                     /locus_tag="VKJ77_20485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein IcmH/DotU"
                     /protein_id="HMC47707.1"
                     /translation="MSYAPSLFGDAPSQQSNRNPVPPTASTYQIHSLLDLLYDGFFML
                     FLLKNGREPADSASFLARIQDFLGDFDRGAKKLNASADDTFAAKFAFCAAVDESVLAS
                     GFKIRSEWERKPLQLTLFGEQLAGEKFFQHLEEARAQGASRLQSLEVFHMCLLLGFQG
                     KYMMEGPEKLAYLTARVGDEIAQMKGKRAPFAPHWPLPDQIAHRLKSEVPLWVIASVF
                     ALIGVLAFVGLNSYLKDSTLKAVAPYSEIVKVGPKSANLTISLP"
     gene            complement(932..2278)
                     /gene="tssK"
                     /locus_tag="VKJ77_20490"
     CDS             complement(932..2278)
                     /gene="tssK"
                     /locus_tag="VKJ77_20490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006409507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HMC47708.1"
                     /translation="MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESVRAIQPYNWG
                     VRSVRFDRDALASNVLRLSDLALVFPDGELYSAPQANDLPPAIALETLPDGVNEFTFY
                     LAMHPLREAGANYVQDPAAGFVSRYVSEQNSVGDHFTDAAQADITFLKASVKLVANSE
                     PRDQYMSVPLVRIRRTATSGFEIDESFVPPSLAIEASPLLHQRLRQLIEALQAKVSAL
                     YGFHREPTKNIIEFRSGDVASFWLLHTASAAFAALTHLYQHPALHPERLFQELLRLAG
                     QLMTFSKGYALADLPVYRHDDPGPAFDQLDGILRDLLDTVISTRYFAIALDEVRPSFH
                     LGRIDSGKIDDKTTFFLSVTAGMPTVELVEAVPARFKVGAPEDVDKLVLSAMPGVRLT
                     YTPQVPPAIPVRPGACYFALETRGALYDRMLQAQSAMIYAPSGIDDLKLDLIAVTS"
     gene            complement(2474..>2809)
                     /gene="tssJ"
                     /locus_tag="VKJ77_20495"
     CDS             complement(2474..>2809)
                     /gene="tssJ"
                     /locus_tag="VKJ77_20495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009910489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system lipoprotein TssJ"
                     /protein_id="HMC47709.1"
                     /translation="PFDTFTDPNREKATLGEDLIRVREVTLIPGQRYTVKEKVTREAG
                     ALGIVALFRDPAQQRWKFAFDPAKSEKSGIMIGLHNCAMTVTGGTVIPADQGLPAQQL
                     NLLSSVSCG"
BASE COUNT          597 a          837 c          829 g          546 t
ORIGIN      
        1 accgttcgac atcccgtttg ccgagagggg gccgcttccg ttcgatgcaa aactcataga
       61 ccttctcctg tgtcgtcagg cacgtcgctt atcgcgctac gcttacgcgc tacgacaccc
      121 aaaggcaccc aatcaaccac acccgactaa ggcaacgaga tcgtcaagtt cgccgacttc
      181 ggccccacct tgacgatctc cgaatagggc gcgacagcct tcagcgtcga gtccttcaga
      241 tacgagttca acccgacgaa cgccagcacg ccgatcaacg caaacaccga cgcgatgacc
      301 cacaacggca cttcgctttt caaccggtga gcgatctgat ccggcagcgg ccaatgcggc
      361 gcgaacggtg cgcgcttgcc tttcatctgc gcgatttcat cgccaactcg cgcggtaagg
      421 tacgcgagtt tttccggtcc ttccatcatg tacttgccct ggaagcccag cagcaggcac
      481 atatggaaca cctctaaaga ctgcagacgt gacgcccctt gcgcacgtgc ttcctcgaga
      541 tgctgaaaaa acttctcgcc tgccagttgt tcgccgaaca acgttagttg cagcggcttg
      601 cgttcccact ccgagcggat cttgaaaccc gacgcgagca cggactcatc gactgccgca
      661 caaaacgcga acttggcggc gaacgtatcg tcggccgatg cgttgagctt cttcgcaccg
      721 cgatcaaagt cgcccaggaa atcctggatg cgcgcaagaa agctggccga gtcggcaggc
      781 tcgcgcccgt tcttgagcag gaacaacatg aaaaagccgt cgtatagcag atcaagcagg
      841 gaatggatct gatacgtcga tgccgtgggc ggaacggggt ttcgattgct ttgttgcgaa
      901 ggggcatcgc cgaaaagaga gggcgcatag ctcatgaagt caccgcaatc aagtcgagtt
      961 tgaggtcgtc gataccggac ggggcgtaga tcatggccga ttgcgcctgc agcatgcggt
     1021 catacagggc gccacgcgtt tcaagggcga agtagcaggc gccgggccgc acgggaatgg
     1081 ccggcggcac ctggggcgtg tacgtaagcc gcacgccggg catggccgag agcacgagct
     1141 tgtcgacgtc ttcgggcgct ccgaccttga accgcgccgg cacggcttcg acaagttcca
     1201 ccgtcggcat gccggccgtg accgagagga agaacgtggt cttgtcgtcg atcttgccgg
     1261 agtcaatgcg cccgagatgg aacgacggac gcacctcgtc cagcgcgatc gcgaagtagc
     1321 gcgtggagat cacggtatcg agcaggtcgc gcaagatgcc gtcgagctgg tcgaaggcgg
     1381 ggccgggatc atcatggcga tagaccggca ggtccgcgag ggcgtaaccc ttcgagaacg
     1441 tcatcaactg gcccgcgagc cgcagcagct cctggaacag gcgctcggga tgcaatgccg
     1501 gatgctggta aagatgcgtg agcgcggcga aggcggcgct tgcggtgtgc agcagccaga
     1561 acgaagcgac atcgccggag cggaactcga taatgttctt cgttggctcg cgatgaaaac
     1621 cgtatagcgc actgactttc gcctgcaatg cctcgatcag ctggcgcagg cgctgatgca
     1681 gcagcggcga cgcttcgata gcgaggctcg gcggcacgaa cgattcgtcg atctcaaagc
     1741 ctgaagtcgc cgtgcgccgg atgcgtacga gcgggaccga catgtactga tcgcgcggct
     1801 cgctgttcgc caccagcttg acgctggcct tgaggaaggt gatgtcggcc tgggccgcgt
     1861 cagtgaaatg atcgcctacg gagttctgct cgctcacata tcgcgagaca aaaccggcgg
     1921 ccggatcctg aacgtaattc gcccctgcct cgcgcaacgg atgcatggcg agatagaagg
     1981 tgaactcgtt gacgccgtca ggcaaagtct cgagcgcgat ggctggcggc aggtcgttcg
     2041 cttgcggcgc ggaatacaat tcgccgtctg gaaataccag cgccaggtca ctcaggcgca
     2101 gcacgttgct cgcgagcgcg tcccggtcga accggactga gcgtacgccc cagttgtagg
     2161 gctgaatggc tcgaacggac tcgaaaagac gtgcctcgtg atacgcgtcc tgacgctgaa
     2221 aatgctgtgg acgcagaaag aggccttctc cccacagcac tttggcggaa taactcatat
     2281 tcaacctgta taggtttcgc tacagcgatt gcgcattatg aaaaatttcc ctctgcacac
     2341 tcgctttcgc tcgggtctta aagacaaccg ctcactgagg ttctgctacg gatatccgct
     2401 tcaaattgcc cgtaccgccg ccacacgtgg cgggttcaat aatattcttt gtaagttcat
     2461 catttaacag ggtctagccg cagctcaccg atgacagcag attcagttgc tgcgccggta
     2521 atccctggtc tgcgggtatc accgttccgc cggtcacggt catcgcgcaa ttatgcaggc
     2581 cgatcattat gccggatttc tccgacttgg caggatcgaa tgcgaacttc cagcgctgtt
     2641 gcgctgggtc gcggaataaa gcaacgatac cgagcgcgcc cgcttcacgc gtcacctttt
     2701 cctttactgt ataacgctgt cccgggatca gcgtcacttc tcgcacgcgg atcaaatctt
     2761 cgcccagagt cgctttttcg cgattcgggt ctgtgaatgt atcaaacgg
//
LOCUS       DATGBK010001469         4620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_86509, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001469 DATGBK010000000
VERSION     DATGBK010001469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4620
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86509"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1223
                     /locus_tag="VKJ77_20500"
     CDS             <1..1223
                     /locus_tag="VKJ77_20500"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HMC47710.1"
                     /translation="NDMWSFKQSYRFLHNSQTIQYVADDAGYTNNGTELARDVYLNTG
                     RLNSHTLDNQATARFNTGPVSHTATVGLDYQYTQFDHAFYGAFDNVPSLSVTNPQYGQ
                     AVPYPDFMFGTSNKQTVKQLGTYAQDQIDIDRWSFLLGVREDWTNENSQSYVTGAESK
                     QFNRAFTWRAGGVYKFDNGFAPYVSYTTSFQPQVGATASGTAFSPTTAQQYEIGVKYQ
                     PKNYNSFVTVSAFHLTQQNVLTTDPNNINFQVQTGEVRSQGFEVEAHASLTNNLALIF
                     SYTYTNLLNTKSNTSNLDKVPVGIPRNTASLWADYTVTSGPLNGVQAGAGVRYIGGSY
                     GDTANSLLLSSATLVDLALRYDLGRALPSMHGWTASLNASNLLNRTYMASCSNGSCYW
                     GQGRLVLAGLKYQW"
     gene            1273..>4620
                     /locus_tag="VKJ77_20505"
     CDS             1273..>4620
                     /locus_tag="VKJ77_20505"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HMC47711.1"
                     /translation="MTSLSTPGEQAGPLPLSPAQEGLWFMQRVAPLSTAYHLARVFHL
                     RGQADISALEQALNVVRARQAVLRTRFAERDGKPVQIVDAPVDVPLPLTDLSSLHADA
                     RDEALAEALAQEARQPFDLSAEGAIRVRVFVMSAQWNVLSVVAHHLVTDGSSNAVFAR
                     ELAHAYGRIVRDEAAPELPDLTWQYTDFAAWQRDMLASEKARADVAWWTGYIGSPHAG
                     FELPVDFTRAPAKERQARTHAFTLTEATANALRSRCKAERCTLFAVLMAAWQLVLSRH
                     SGSDDFCIGVPTSGRTREESEDLIGLFVDTQVYRARVQPAMTGRSLLQAVRNDTRAAL
                     DHGSVTLAVLVDALGVQREADRHPLFQTLFNVQGATASGKLQLAGLDVDIVDTESQVA
                     RFDLSLDIRASANAVTCTARYDGALYRVETIARLGRHYEAMLTGLCQDPDRPVAEIAF
                     IDEEELSRLSAWSTQAAEFGEPEPVHRLFERHAVKTPDAPALLFGDEVLTYRELDQRA
                     NQLAHRLVKLGVGPEVKVGISLERSVEMVVGLLAILKAGGAYVPLDPDYPPDRLAYMI
                     GDSGVGLLLTQRAVHERLNQHFPPDDACTVLELDALDTSGEPLHRPDIQIHAENLAYV
                     IYTSGSTGRPKGAANRHGALFNRLVWMQAAYGLDATDTVLQKTPFSFDVSVWEFFWPL
                     MFGSRLAVAGPGDHRDPARLVELIDRFKVTTLHFVPPMLQAFIASLDGDCAVCASLRQ
                     IICSGEALPATLQDRALQRLPHVQLHNLYGPTEAAIDVTHWTCQAGDPVVPIGRPIAN
                     VSTHVLDQSMNRLPVGVAGELYLGGAGLARGYLNRPGLTAERFVPDPSMEGGRLYRTG
                     DLARWRDDGALDYLGRLDHQVKIRGFRIEPGEIEAVLQTLPGVDEAVVVAQDGPGGKR
                     LVAYVTARAGHELQRDALAASLHDVLPEYMVPSAWVQLDRLPLSPNGKVDRRALPVPS
                     QTERVWEAPQGDIEPVLARVWQEVLGVERVGRDDNFFELGGDSILSLLIVERVRLAGW
                     KVTPRQLFERQTVVQLAAVAEPVVATAVVANAATQDTTKAFLPMQAWFLDLPMEPRHH
                     WNQAVLLTSREPLDTALLERALHALVQH"
BASE COUNT          867 a         1363 c         1457 g          933 t
ORIGIN      
        1 tgaacgacat gtggtcgttc aagcagagtt atcgtttcct gcataacagc cagaccatcc
       61 agtatgtggc tgacgacgcg ggctacacca acaacggcac ggaactggcg cgcgatgtgt
      121 acctgaacac gggccgcttg aactcgcaca cgctcgacaa ccaggcgact gcgcgcttta
      181 acacggggcc ggtgtcgcat acggcgaccg tgggtctcga ctatcagtac acccagttcg
      241 accacgcctt ctacggagcg ttcgacaatg tgccgtcgct cagcgtcacg aatccgcaat
      301 atggccaagc cgtgccgtat ccggacttca tgttcggcac gtcgaacaag cagacggtca
      361 agcagctcgg cacctatgct caggaccaga tcgacattga ccggtggtcg ttcctgctgg
      421 gcgtgcgtga agactggacg aacgaaaata gccagtcgta tgtgacgggt gcggagtcta
      481 agcagttcaa ccgcgcgttc acctggcgtg cgggcggtgt gtacaagttc gacaacggct
      541 ttgcgccata cgtcagctac acgacgtcgt tccagccgca ggtcggcgcg actgcttcag
      601 ggacggcgtt ctcaccgacg accgctcaac agtatgagat cggcgtgaag tatcagccga
      661 agaactacaa cagtttcgtc acggtatcgg cgtttcacct gacgcagcaa aacgtgctga
      721 ccacggaccc gaataacatc aacttccagg tgcagaccgg cgaagtgcgg tcccagggtt
      781 tcgaggttga agcccatgcg agcctgacca ataacctcgc gctgatcttc agctacacat
      841 acacgaacct gcttaacacg aagagcaata cgtcgaacct cgacaaggtg ccggtcggta
      901 tcccgcgcaa taccgcgtcg ctgtgggcgg actacacggt gaccagcggg ccgcttaacg
      961 gtgtgcaagc gggcgcgggc gtgcgttata tcggcggttc atacggcgat acggcgaact
     1021 cgctcctgct ctcgtcggct acgctggttg accttgcgtt gcgttacgac ctcggccgcg
     1081 cgttgccctc catgcacggc tggacggctt cgcttaatgc aagcaacctg ctcaatcgca
     1141 cttacatggc gtcgtgcagc aacggttctt gctactgggg ccaaggccga ctcgtactcg
     1201 cgggattgaa atatcagtgg taactcaaca ggaggcgggg cgccgatgcg gtctattgca
     1261 gcaagagctt tattgacgtc cttatcgacg cccggcgaac aagccggacc actgccgctg
     1321 tctcctgcgc aggaagggct ctggttcatg cagcgggttg cgccgctgtc tactgcctac
     1381 catctggcgc gcgttttcca cttgcgcgga caagccgata tcagcgcgct tgaacaggcg
     1441 ctgaatgttg tgcgtgcacg gcaggctgta ttgcgtacgc gttttgcgga acgagacggc
     1501 aagcctgttc agatcgtcga tgcaccggtc gatgtgccat tgccattaac cgatctttct
     1561 tcgcttcatg ccgatgcacg cgatgaagcg ctggcggaag cacttgctca ggaggcgcgg
     1621 cagccgttcg acctgagcgc tgaaggtgca atccgcgtgc gggttttcgt gatgtcggcg
     1681 cagtggaacg tgttgtcggt ggtggctcat catctcgtca ccgatggctc gtcgaatgcg
     1741 gtcttcgcgc gtgaactcgc ccacgcgtac ggccggatcg tacgcgacga agcggctcca
     1801 gaactaccag acctgacgtg gcagtacacc gatttcgccg cgtggcaacg cgatatgctg
     1861 gcaagcgaaa aggcccgcgc cgacgtagcg tggtggaccg ggtacatcgg ctcgccccat
     1921 gcgggtttcg aactgcctgt cgatttcaca cgagcaccgg ctaaggaacg tcaggcgcgt
     1981 acccacgcct tcacgctgac tgaggccacc gctaatgcgc tccgctcgcg ctgcaaagcg
     2041 gagcgatgca cgctgtttgc cgtcttaatg gcggcgtggc agttggtgtt gtcgcgccat
     2101 tccggcagcg acgacttctg catcggcgtg ccaaccagcg gacgaacccg cgaggaaagc
     2161 gaagacctga tcggtctttt tgtcgatacg caggtgtatc gcgcacgcgt tcaaccggcc
     2221 atgactggac gctcgctgct gcaggcggta cgcaacgaca ctcgggccgc actcgatcat
     2281 ggcagcgtca cgttggccgt gctcgtcgat gcgttaggtg tgcagcgcga agccgatcgc
     2341 cacccgctgt tccagacgct cttcaacgtg cagggcgcta ccgcatcggg aaagttgcaa
     2401 ctggccggtc tcgatgtcga tatcgtcgac accgaaagtc aggttgcccg gtttgacctg
     2461 agcctggata tccgtgcgag cgccaacgcg gtcacgtgta ccgcacgcta cgacggcgcg
     2521 ttatatcgtg ttgaaaccat cgcccggctt ggacgtcact acgaagccat gctgaccggc
     2581 ttatgccagg accctgatcg gccggtcgcg gagattgcgt ttatcgatga agaggaactg
     2641 tcgcgcctct cggcctggag cacgcaagct gcagagtttg gcgaaccgga gcccgttcac
     2701 cgtttattcg aacgacacgc agtaaagaca ccggatgccc ccgcgctctt gttcggcgac
     2761 gaggtactga cgtatcgcga actcgatcag cgcgccaatc agcttgcgca tcggctggtg
     2821 aagcttggcg tggggccgga ggtgaaggtc ggtatcagcc tcgaacggtc ggtggagatg
     2881 gtggtcggct tgctggccat attgaaggca ggcggcgctt acgtcccact cgatcccgac
     2941 tatccgccgg atcggttggc ctacatgatc ggcgatagcg gcgtggggct gctgcttacg
     3001 cagcgcgctg tgcatgaacg cctgaaccag catttcccac cggacgacgc atgcacggtg
     3061 ctcgaactcg acgcgctgga tacatcgggt gaaccgctgc atcgtccgga tattcagatt
     3121 cacgcggaaa atctggctta cgtcatctac acgtcgggtt cgacaggacg tccgaagggc
     3181 gctgcgaacc gtcacggcgc attgttcaat cggctggtct ggatgcaggc cgcttacggg
     3241 ctcgacgcca ctgataccgt tttacaaaag acaccattca gcttcgatgt gtcggtctgg
     3301 gagttcttct ggccactcat gtttggctcg cgtctggcgg tggcggggcc gggcgatcac
     3361 cgggaccctg caaggctggt tgaattgatc gaccgcttca aggtgaccac gctgcatttc
     3421 gtgccgccaa tgttgcaggc tttcattgct tcactcgatg gcgactgcgc tgtttgcgcc
     3481 agcctgcggc agatcatctg cagcggcgaa gcgttgccgg cgaccttgca ggatcgtgcg
     3541 ctgcaacgtc tgccgcatgt ccaattgcat aacctgtacg gcccgaccga agcagccatc
     3601 gacgtcacgc actggacttg ccaagcgggc gatccggtcg tgccgatcgg ccggccgatt
     3661 gcaaacgtaa gcacgcatgt gcttgatcaa tcgatgaatc gtttgccggt gggtgtagca
     3721 ggagaactct atttgggtgg cgcgggactc gcgcgcggtt atctcaaccg gccggggctg
     3781 acggcagagc gtttcgtacc cgatccgtcc atggagggtg gtcggctgta tcgcacgggc
     3841 gaccttgcgc gctggcgtga cgatggcgcg ctcgactatc tcgggcggct cgatcatcag
     3901 gtcaagatcc ggggctttcg cattgagccg ggtgagatcg aggccgtgtt gcagaccttg
     3961 ccgggcgtcg atgaagcggt ggtcgtggcg caagatggac cgggggggaa acggctggtc
     4021 gcgtatgtga cggcgcgtgc cggtcatgag ctgcagcgcg atgcgctggc tgcgtccctg
     4081 catgacgtcc tgcctgaata catggtgccg tctgcctggg tccaactcga tcggctgccg
     4141 ttgtcgccta acggcaaggt ggatcgccgt gcgctgcccg tgccttccca gacggaacga
     4201 gtttgggaag cgccgcaagg cgacatcgaa ccagtattgg cacgcgtctg gcaagaggtg
     4261 ttgggtgtcg aacgcgttgg ccgcgacgat aacttcttcg agctgggcgg cgattcgatt
     4321 cttagcctgc tgatcgtgga gcgtgtacgg ctggccgggt ggaaggtgac gccgcggcaa
     4381 ttgttcgagc gccaaaccgt ggttcagctt gctgccgtcg ccgagccggt tgttgcaaca
     4441 gccgtcgtcg ctaacgcggc aacacaggac accactaagg catttttgcc catgcaggca
     4501 tggttcctcg acctgccgat ggagccgcgg catcattgga accaggcggt gctgctgacg
     4561 agccgcgagc cattggacac tgcgctgctg gagcgcgcgt tgcatgcact ggtgcagcac
//
LOCUS       DATGBK010001470         2239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_318101, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001470 DATGBK010000000
VERSION     DATGBK010001470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318101"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..1960)
                     /locus_tag="VKJ77_20510"
     CDS             complement(20..1960)
                     /locus_tag="VKJ77_20510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC47712.1"
                     /translation="MQPLHLLLVEDNALDAELTLTQLERADYKVDVQIVYTEQGFVAA
                     LEASDFDVILADFVMPVFSGVEALAIARERVPHTPFIFVSGVLGEEHAVDMLKRGATD
                     YVLKQRMQRLPAVVRRALTESAERQQRISVERALRETETHFRLLVDALKDYAVITLDQ
                     EGRIRTWNAASERILGFAALDVVGQSAEVFYGQEDRDTRVFAQELETAQVHGSASDDR
                     WLWRKDGRSFFASGVTTAIRADNGDLIGYSKIIRDVTEEHMAADALRVAKEQAETANR
                     AKDHFLAVLSHELRTPLTPIVAAVRLLEIRHALPADAQATLELIRRNVELEARLIDDL
                     LDLTSIARGKLSLNFANVVLETLMSSALDMSESDLRGKGLMLETTLGATSTLVFGDAA
                     RLQQIVWNLMKNAVKFTPAGGRIAVRMWNPDTSTIAISVTDSGIGISAEALPRIFSAF
                     EQADDSITRAFGGLGLGLAIASTLALKHGGTLTAQSDGRDKGARFTLTLPLVKAGAED
                     ETSPLAAQDPDEIVRSLKVLLVEDNEYTSSAMAQVLEVLGHQVGVATTVAEALALARG
                     EVFDLLVSDIGLPDGSGLEVARAWTDLQPGKPSVAITGYGMDEDIRRCRDAGFMDHLT
                     KPVDFARLESLIHALARRPGGT"
     gene            complement(2097..>2239)
                     /locus_tag="VKJ77_20515"
     CDS             complement(2097..>2239)
                     /locus_tag="VKJ77_20515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013901876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC47713.1"
                     /translation="GANAYVVKPVEFNEFVQAIADLGVFWAVLNEPPPGSTRLRRQFA
                     PE"
BASE COUNT          441 a          745 c          660 g          393 t
ORIGIN      
        1 gtaagcctgc gaaccatgac tatgtaccgc cgggccgcct ggccaaagcg tgaatcagcg
       61 actccagccg cgcgaagtcg accggttttg tcaggtggtc cataaacccg gcatcgcggc
      121 atcggcggat atcttcgtcc atgccataac cggtgatggc aaccgacggt ttaccgggtt
      181 gcaagtcggt ccacgcgcgg gcgacctcga gcccgctgcc atctggcagg ccgatatcgc
      241 tgaccagcag atcgaacact tcgcctcggg ctaaagcaag cgcctcggcg actgtggtgg
      301 caacgccgac ctgatgtccg agcacctcca gcacctgcgc catggcggac gacgtgtatt
      361 cgttgtcctc gacgagcagc accttcagcg accgcacgat ctcatccgga tcctgcgcgg
      421 cgagcggcga agtttcatct tccgccccag ccttcacgag cggcaacgtc agcgtgaacc
      481 gggcaccctt gtcgcgccca tcgctctggg ccgtcagcgt tccgccatgc ttcaacgcga
      541 gcgtgctggc gatagccaag cccagcccca acccgccgaa cgcccgggtg atggaatcat
      601 cggcttgttc gaaggctgaa aagatccgcg gcaacgcttc ggcgctgatc ccgataccgc
      661 tatcggtgac cgaaatcgcg atggtcgatg tatccggatt ccacatccgc acagcaatac
      721 gcccgcccgc cggcgtgaac ttcaccgcgt ttttcatcag gttccacacg atctgctgca
      781 agcgcgcggc atcgccgaaa accagcgtcg atgtagcgcc caaggttgtt tccagcatca
      841 agcccttgcc gcgcagatcg gactccgaca tatcgagcgc gctcgacatc agcgtctcca
      901 gcaccacatt cgcaaagttc agcgaaagct tgccgcgcgc gatactggtc aggtcgagca
      961 gatcgtcgat caagcgcgcc tccagctcca cattgcgccg gatcagttcg agtgttgcct
     1021 gggcgtcggc gggtaacgcg tggcgtatct ccagcaaacg cacggcggcg acgatcggcg
     1081 tcagcggcgt gcgcaattcg tgcgacagca ccgccaggaa gtgatctttc gcccgattcg
     1141 cggtctcggc ctgctccttc gccacgcgca aggcgtcggc ggccatgtgc tcttcggtga
     1201 cgtcgcggat gatcttcgaa taaccaatca ggtcgccgtt atcggcgcga atcgctgtcg
     1261 ttacgcctga tgcgaagaac gagcgcccgt ctttacgcca gagccagcgg tcgtcgctcg
     1321 cactgccatg gacttgcgcc gtctccagtt cctgcgcaaa cacacgggtg tcgcgatctt
     1381 cctggccgta gaaaacttcg gcggactggc cgaccacatc cagcgcggcg aacccgagaa
     1441 tccgctccga cgccgcgttc cacgtccgaa tcctgccctc ctgatcaagc gtgatgaccg
     1501 cgtaatcctt cagcgcatcg accagcaagc ggaagtgcgt ttctgtctcc cgcaacgcgc
     1561 gttcgaccga aatacgctgc tggcgctcgg cgctttccgt caaggcgcgc cgcacgacgg
     1621 caggcagccg ttgcatacgc tgcttgagca catagtcggt ggcgccgcgc ttgagcatgt
     1681 cgacggcatg ctcctcgccg agcacgccgg agacgaagat gaacggcgta tgcggcacgc
     1741 gctcgcgggc gattgccaat gcttcgacgc cggagaacac cggcatcacg aagtccgcga
     1801 ggatcacatc gaagtcggac gcctcgagcg ccgctacgaa accctgttcc gtatagacaa
     1861 tttgcacgtc gaccttatag tcggcgcgtt ccagctgggt cagggtcaat tccgcgtcga
     1921 gcgcgttgtc ttctacgaga agcagatgca aaggctgcat ggtcagggca ctcaggcgaa
     1981 ccggcacacg cgatactgcc gggcaggtcg catcgggcaa aacaacgaaa ggaccagcgg
     2041 gcccaggccg ctacgccgag cactgtgcag gaggaagacg ccagtgtgca ccagattcat
     2101 tccggcgcga actgacggcg aaggcgcgtt gaccccggcg gcggctcatt gagcacggcc
     2161 cagaacacgc cgagatcggc aattgcctgc acgaattcgt tgaactcgac cggcttcacc
     2221 acgtaagcat tcgcgccga
//
LOCUS       DATGBK010001471         1569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_132831, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001471 DATGBK010000000
VERSION     DATGBK010001471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132831"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..787)
                     /locus_tag="VKJ77_20520"
     CDS             complement(<1..787)
                     /locus_tag="VKJ77_20520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009908754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HMC47714.1"
                     /translation="MSDTRPDTLFALTALSPLDGRYAAKTEALRDWLSESAFMKHRVK
                     VEIHWLIALSQAGFDEIPRFSDAAEDFLLQLAERFTAHDAARIKDIEKVTNHDVKAVE
                     YWLKESVKGNAELERASEFIHFACTSEDINNTSHGMMLDGAREHVILPALRSVHERLV
                     KLAHAHAAQPMLSRTHGQPASPTTLGKEMANVAARLQQAIERIAEVPVLAKMNGAVGN
                     YNAHLSAYPEFDWEAFSEAVVEDRLKLTFNPYTIQIEPHDYMAE"
     gene            939..1184
                     /locus_tag="VKJ77_20525"
     CDS             939..1184
                     /locus_tag="VKJ77_20525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018315532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid stabilization protein"
                     /protein_id="HMC47715.1"
                     /translation="MATLTIRNLDDHVKALLRVEAARHGRSMEEEVRVILQNALAGTA
                     NVTGFGSRVHQRFASLADKGLTIPDRTEQPRAAEFPE"
     gene            1181..>1569
                     /locus_tag="VKJ77_20530"
     CDS             1181..>1569
                     /locus_tag="VKJ77_20530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018004414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HMC47716.1"
                     /translation="MIILDTNVLSELMRANPDENVLAWLDVQNMQDLQTTAVTVAELF
                     YGVARLPHGRRKSELRGAIESMFEGELAGRVLPFDDHCARQYALLVAEREAKGRPISS
                     ADAQIAAICLSRDAALATRNGKDFEGTG"
BASE COUNT          329 a          443 c          475 g          322 t
ORIGIN      
        1 gttcggccat gtaatcgtgc ggttcaatct ggatggtgta gggattgaac gtcaacttca
       61 gccggtcttc cacgaccgct tcggagaacg cttcccaatc gaattccgga tacgccgata
      121 aatgcgcgtt gtagttcccc acggcgccat tcatctttgc cagaaccggc acttcggcaa
      181 tccgttcaat cgcctgctga agcctcgccg ccacgttcgc catttccttg ccgagcgtgg
      241 tcggacttgc cggctggcca tgagtgcgcg acagcatggg ttgcgccgcg tgcgcgtgag
      301 cgagcttcac caggcgctca tgcaccgagc gcagtgccgg gaggatcacg tgttcgcgcg
      361 cgccgtcgag catcatgccg tgcgacgtgt tgttgatgtc ttctgaggtg caagcaaagt
      421 ggatgaactc gctcgcgcgt tcaagttccg cattgccctt cacggattcc ttgagccagt
      481 attcgacggc tttcacatcg tgatttgtga ctttctcaat gtccttgatc cgggcggcgt
      541 cgtgagcggt gaagcgttcg gcgagctgga gcaagaagtc ttcggcggcg tcggagaagc
      601 gcgggatttc atcgaaaccg gcttgcgaaa gcgcgatcag ccaatgaatt tccaccttca
      661 cgcgatgctt catgaacgcg gattcggaca gccagtcccg cagcgcttcg gttttagcgg
      721 cataacggcc gtcgagagga gacagcgcgg tgagcgcgaa gagggtatcg ggacgggtat
      781 cggacatggg caaccgcgaa gaaaaggcga aagggaaggc actattttaa catttgcaaa
      841 ccgcgtgctg atcgacaccg gcttcatcct gctgacaagc gaccatcctc cgcattatgt
      901 gctagcattg cagtcaatga cagcaaacgg ggtattcaat ggccacgctg acaattcgca
      961 atctggacga tcacgtaaag gctttgcttc gtgttgaagc ggcgcggcat ggccggtcga
     1021 tggaagaaga ggtacgagtg atcctgcaaa atgcgttggc tggaactgca aacgtgacgg
     1081 gtttcggcag ccgtgtgcac caacgctttg cgagcctcgc agacaagggc ctgacaatac
     1141 cggatcgcac ggaacagcca cgggccgctg agtttccgga atgatcattc tggatacgaa
     1201 cgtcttgtcg gagctcatgc gcgccaaccc cgacgaaaac gtgctggctt ggctggacgt
     1261 ccagaacatg caggacctgc aaaccacggc tgtcactgtc gccgaactgt tttacggcgt
     1321 tgcacggctt ccgcatggcc gacgcaaatc cgagctgcgt ggcgcaatcg aatcaatgtt
     1381 cgagggtgaa ctcgccggcc gggtactgcc tttcgatgat cattgcgccc gtcaatacgc
     1441 cttgctcgta gctgaacgcg aggcaaaagg ccggccgatc agttccgccg atgcgcagat
     1501 cgccgcaatc tgtctcagcc gcgacgcggc gctcgcgacg cgaaacggca aggacttcga
     1561 aggaacggg
//
LOCUS       DATGBK010001472         1858 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_16977, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001472 DATGBK010000000
VERSION     DATGBK010001472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16977"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..448)
                     /locus_tag="VKJ77_20535"
     CDS             complement(<1..448)
                     /locus_tag="VKJ77_20535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010105519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase N-terminal
                     domain-containing protein"
                     /protein_id="HMC47717.1"
                     /translation="MKITIIGTGYVGLVTGACLAEIGNDVLCLDVDARKIDILNNGGV
                     PIHEPGLHEILKRTRAAGRIRFSTNIQESVEHGEIQFIAVGTPPDEDGSADLQYVLEA
                     ARNIGRYANGFKVIVDKSTVPVGTAQHVRNVVEQELKARGIEPTGKN"
     gene            complement(602..1777)
                     /gene="lapB"
                     /locus_tag="VKJ77_20540"
     CDS             complement(602..1777)
                     /gene="lapB"
                     /locus_tag="VKJ77_20540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008653 - lipopolysaccharide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HMC47718.1"
                     /translation="MDLDFWWLLVIPVAFALGWMASRYDLKTLLSENANLPRSYFRGL
                     NFLLNEQHDKAIDAFIEVAKLDPETIELHFALGNLFRRRGETDRAIRVHQNLLSRADL
                     PVAERDHALFELGQDFLKAGLLDRAEETFRSLEAGEYALGAQRALLTIYEIEKDWNKS
                     IATAGRIQEMGAATLEKEVAQFHCELAQEALQRKNPADARAELKLALAANPENVRATI
                     LVGDVDAAGGDLEAAIACWRRVEEQNAAYLPLVAEKLVQAYEQLGRTAEGVDLLVDYV
                     NRYPSNDLLDVAFKHVSQLRGMDAAHALARHQMQTSPNVAGMTRLLEAQVATAEEPRR
                     SELELMRTLVKQRTKNLPRYTCQNCGFRARLFYWQCPGCSGWETYAPRRVEPITASV"
BASE COUNT          339 a          571 c          571 g          377 t
ORIGIN      
        1 cgttcttccc cgtcggctca attccgcgcg ccttcagttc ctgctcgact acgttgcgca
       61 cgtgctgggc tgtgccgact gggaccgtcg atttatcgac gatcaccttg aagccgtttg
      121 cataacgccc gatgttgcgc gcggcctcga gcacgtactg caagtcggcg gagccgtctt
      181 cgtccggcgg cgttcccacc gcgatgaact ggatctcgcc gtgctcgacg ctttcctgga
      241 tattcgtgga aaaacggatg cggcccgcag cacgcgtacg tttcagtatc tcgtgcaggc
      301 ccggttcgtg gatcggcaca ccgccgttat tgaggatgtc gatcttgcgc gcatcgacgt
      361 ccaggcacag cacgtcgttg ccaatttcag cgaggcacgc gccggtcact agtccgacgt
      421 agcccgtccc gatgatggtt attttcataa gcgttccgga gagaccggta attgtcgaag
      481 gatcaggcca aaacggccgc ggagtccgat cgtgtcaaac gttgcgtgtc ccggagcggg
      541 ccaggccaga gcagccaggc cacgcgggcc gcgcatcagt ccgtgctcac gcaatccgcg
      601 ttcagacgga tgcggtgatc ggctcgacgc ggcgtggcgc ataggtttcc cagccgctgc
      661 agccaggaca ttgccagtaa aaaagacgcg cgcggaaacc gcaattctgg cacgtgtagc
      721 gcggcaggtt cttggtccgc tgcttgacga gcgtgcgcat cagttcaagt tcgctgcgac
      781 gcggttcctc ggccgtcgcc acttgcgctt ccagcaaccg cgtcatgccg gcgacattcg
      841 gcgatgtctg catctggtgc cgggcaagcg cgtgggctgc gtccatcccg cgcaattgcg
      901 agacgtgctt gaacgccacg tcgagcagat cgtttgacgg atagcgattc acatagtcga
      961 ccagcagatc gacgccttca gccgtacggc cgagttgttc gtaagcctga acgagttttt
     1021 ctgccaccag cggcaaataa gctgcattct gctcttccac gcgacgccag catgcaatgg
     1081 ccgcctcaag atcgccaccg gcggcatcca cgtcgccaac caggattgtc gctcgtacgt
     1141 tctcgggatt ggccgcgagc gcgagcttca gttccgcgcg agcgtctgcc gggttcttgc
     1201 gctgcagcgc ttcttgcgcg agttcgcaat ggaactgggc gacttccttc tcaagcgtcg
     1261 ccgcgcccat ttcctggatc cggccggcgg ttgcaatcga cttgttccag tctttctcga
     1321 tctcgtagat ggtcagcaac gcgcgttgcg cgccgagcgc atattcgccc gcttcgagcg
     1381 atcggaacgt ttcctcggcg cgatccagca gacccgcctt caggaaatcc tggccgagtt
     1441 cgaacagcgc gtgatcgcgt tcggcgactg gcagatcagc gcggctcagc aggttttgat
     1501 gcacgcgaat cgcccggtcc gtctcaccgc ggcggcgaaa caggttaccg agcgcaaagt
     1561 gcaattcaat ggtttcaggg tcgagctttg caacttcgat aaaggcgtcg atggccttgt
     1621 cgtgttgttc gttcagcagg aaattgaggc cgcgaaaata cgagcgcggc agattcgcgt
     1681 tttcggacag cagcgttttc aggtcatagc gggatgccat ccagccgaga gcgaacgcga
     1741 ccggaatgac aagcagccac cagaagtcta gatccatgcg aattcttgga aagggttaag
     1801 ggccggcgaa gggccagcgc ggcgtgccgg gagcgggcac ccggccgcac tggcacgg
//
LOCUS       DATGBK010001473         2675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_156081, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001473 DATGBK010000000
VERSION     DATGBK010001473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156081"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..785)
                     /locus_tag="VKJ77_20545"
     CDS             complement(<1..785)
                     /locus_tag="VKJ77_20545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HMC47719.1"
                     /translation="MNSTATFVFVLFFIGVTILGFVAAHWRKADLGQLDEWGLGGRRF
                     GTIVTWFLLGGDLYTAYTFVAVPALVFGAGATGFFALPYTILIYPFAFVVFPKLWAIS
                     KKFGYVTAADFVHARYNSRMLALAIAVTGIVATMPYIALQLVGIEVVIGALGFDTTGF
                     VGDLPLIIAFAILAAYTYTSGLRAPAMIAVVKDVLIYITIIAAMIIIPAQLGGFGAIF
                     AHVDPAKILLKAPDASSLNGYSAYATLAVGSALALFLYPHSVTA"
     gene            complement(785..1039)
                     /locus_tag="VKJ77_20550"
     CDS             complement(785..1039)
                     /locus_tag="VKJ77_20550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HMC47720.1"
                     /translation="MAQEAVTASGQVRNKRWLWLLVLPWIGVVWVPFYNKIEPVLMGF
                     PFFYWYQLLWVLISAVITAVVYLKTKPIHDVPKLTPGSPR"
     gene            complement(1326..2249)
                     /locus_tag="VKJ77_20555"
     CDS             complement(1326..2249)
                     /locus_tag="VKJ77_20555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine synthase"
                     /protein_id="HMC47721.1"
                     /translation="MTQLIKRASAEARAFGSKREDKHDKKHGKRSQRERGDDLDRDLD
                     DAPRIDVPRKPRFAPVTFSEEGGVRFLHFGTEWVQGAMRLKKPNHIELEYAQQMMAWL
                     LFIETPKRIVQLGLGSAALTKFAHAFLKRAKVEAVELNPSVVIAARTMFELPNDDARL
                     TVHEQDAWDFVNDRANHGTIGALQIDVYDATARGPVLDSTSFYRACRACLTAPAGVVT
                     VNLFGDHPSFVLNMKRLNEAFDGRVIALPEVHDGNRIAIAFAGPELDVPYAQLETRAK
                     LIEKELKLPARQWVKGLAISAGADDATSFSI"
     gene            complement(2246..2674)
                     /locus_tag="VKJ77_20560"
     CDS             complement(2246..2674)
                     /locus_tag="VKJ77_20560"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033958 - DNA-deoxyinosine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HMC47722.1"
                     /translation="MILGSFPGVASLDAAQYYAHPRNQFWRLVGTVIDEPLNELPYND
                     RVLKLLKHGLGLWDVLAACEREGSLDTAIRNANPNDFASFRLHAPRLKKLCFNGKTSG
                     RFEPVIRAAGYETLVLPSSSPANAILSFDQKLRFWRDILK"
BASE COUNT          562 a          799 c          811 g          503 t
ORIGIN      
        1 gccgtcaccg agtgcggata caggaacagc gcaagcgccg acccgactgc taacgtggca
       61 tacgcgctgt aaccgttcag gctcgatgcg tccggtgcct tcagcaggat cttcgccgga
      121 tcgacatggg caaagatcgc gccgaatccg ccaagctgcg ccgggatgat gatcatggcc
      181 gcgatgatcg tgatgtagat cagcacgtcc ttcacgaccg cgatcatggc cggcgcgcgc
      241 aggcctgacg tgtacgtgta ggccgcgaga atcgcgaacg caatgatcag cggcagatcg
      301 ccgacgaagc ccgtcgtatc gaaaccgagc gcgccgatca ccacttcaat acccacgagc
      361 tgcagcgcga tgtacggcat cgtcgcgaca atccccgtca cggcaatggc caacgccagc
      421 atgcggctgt tgtagcgagc gtgcacgaag tcggcagcgg tgacgtagcc gaacttcttc
      481 gagatcgccc agagcttcgg gaacacgacg aacgcgaacg gatagatcag gatggtgtac
      541 ggcaacgcga agaagccggt ggcgcccgcg ccgaacacaa gcgccggaac cgcgacaaac
      601 gtgtaggccg tataaaggtc accgccgagc aggaaccacg tgacgatcgt gccgaagcga
      661 cggccgccga gaccccattc atcgagttgt ccgagatcgg ccttgcgcca gtgagcagcg
      721 acaaaaccca ggatcgtcac gccgataaaa aacaggacga agacgaaggt tgctgtggag
      781 ttcatcatcg cgggctcccc ggcgtgagct tgggaacatc gtggatgggc ttggtcttca
      841 aatagaccac agccgtaatc accgcgctga tcaacaccca gagcaactgg taccagtaga
      901 aaaacggaaa gcccatgagc acaggctcga tcttgttgta gaacggcacc cagaccacgc
      961 cgatccacgg aagaaccagc agccaaagcc accgcttgtt gcgaacttga ccactggcgg
     1021 tcaccgcttc ttgagccatg acgctctcct ctttcttttg aaatatgctg cttgactagg
     1081 ctttgcgcgg gtctcgcggc aaaacttcag tctaatagcg ccccgaaata acacgtggag
     1141 tatatggacg cagaaaagcg ggtcaagcag ggcgaacccg aaccgtaatg atggagaaaa
     1201 gccagttgta atgtcctggt ttcttcggct gcgctttgtc cgcgctttgt ctgcgcttct
     1261 tccattcagg cagcgggtcc gttgtcggac ctcgccttgg gtgctttagc ttgctacctt
     1321 aacgatcaga tggagaagct tgttgcgtcg tccgcgccgg cgctgatcgc caggcccttc
     1381 acccattgac gggccggcag cttcaactcc ttctcaatca gcttcgcgcg cgtttcgagc
     1441 tgtgcatacg gcacgtcgag ttctggaccg gcaaacgcga tggcaatgcg attgccgtcg
     1501 tggacttcgg gcagcgcgat cacgcggcca tcgaaggctt cgttcaggcg cttcatattg
     1561 agcacgaagc tcggatgatc gccgaacagg ttgaccgtca ccacgcccgc cggcgccgtc
     1621 aggcaagccc ggcacgcacg atagaacgag gtgctgtcca gcacggggcc gcgcgcggtg
     1681 gcgtcgtaga catcgatctg caatgcgccg atggtcccgt gattcgcacg gtcgttgacg
     1741 aagtcccacg cgtcctgctc gtggacagtc agccgtgcgt cgtcgttcgg cagttcgaac
     1801 atcgtgcgcg ctgctatcac gacggacggg ttcagttcga ccgcttccac cttcgcgcgc
     1861 ttcaggaacg catgcgcgaa cttggtcagc gcggcagagc cgagtccgag ttgcacgatg
     1921 cgcttcggcg tttcgatgaa caacagccac gccatcatct gctgagcgta ttcaagctcg
     1981 atgtgattcg gcttcttcag gcgcatcgcg ccctgcaccc attcggtgcc gaaatgcagg
     2041 aaacgcacgc cgccctcttc cgagaacgtc acgggcgcga aacgcggttt acgggggaca
     2101 tcgatacgtg gggcatcgtc gagatcgcgg tcgagatcat cgccgcgctc gcgctgcgag
     2161 cgcttgccgt gcttcttgtc gtgcttgtct tcgcgcttgc tgccgaacgc gcgagcttcc
     2221 gctgacgcgc gtttgattaa ttgggtcatt tcaggatgtc gcgccagaag cgcaattttt
     2281 gatcgaacga gaggatagca ttcgccggac tcgacgacgg caggacgagg gtttcatagc
     2341 ctgccgcacg gatcacaggc tcgaaacgcc cggaggtctt gccgttgaag cagagctttt
     2401 tgagtcgcgg cgcatgaagg cggaacgatg cgaaatcgtt ggggttggcg ttgcggattg
     2461 cggtgtcgag actgccttcg cgctcgcagg cagcaagcac gtcccatagg ccgaggccgt
     2521 gcttgagcag cttgagcacg cggtcattgt agggaagctc gtttagaggc tcatcgatca
     2581 ccgtacccac cagccgccag aactggttac gtggatgcgc gtaatactgc gcggcatcaa
     2641 gcgacgccac gccgggaaaa ctgccgagaa tcagc
//
LOCUS       DATGBK010001474         1808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_40973, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001474 DATGBK010000000
VERSION     DATGBK010001474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40973"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1258
                     /locus_tag="VKJ77_20565"
     CDS             <1..1258
                     /locus_tag="VKJ77_20565"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC47723.1"
                     /translation="PPETSRVALPPSVDLVIVGSGYCGLSAAAEAARQGASVAVLDAA
                     EIGAGGSTRSGGMVSSGQKLALTDAIRGVSAERLGRLMAESTASFDYLKHLIASESLD
                     ADLQITGRFFGAFTPGHFERLRQQGELLREKTGVTVHVVARAEQRAVVGSDYYYGGIL
                     VDEYGGVHTAKYHRALRELARRCGASLHSHAAVERIERTGARFAVHTARGKIDAKQVL
                     VATNGYTGPLLPFLSRRVLPVASYQIATEPLPPGLMDVLNPGRRMISDSKRNLFYTRP
                     SPDGTRMLFGSRPSFREVGEREAARILHRKMVQLWPALRDVRITHAWKGYVAMTGDKL
                     AHIGERDGVFYALGCNGNGVALMSYLGQRIARTLSSLDAAPGAFGEGPFPLSPGGMAR
                     SLRVPMGTVLYQLDDCWNGRVRGALS"
     gene            1341..>1808
                     /locus_tag="VKJ77_20570"
     CDS             1341..>1808
                     /locus_tag="VKJ77_20570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47724.1"
                     /translation="MRFRHFLSLVSLVASFSLMAATSAHADDLGTLAPGKLMAGVDAN
                     NKPYSYIDNGKMTGFDVELLRAVGAKLGLSVDFRAQDFSGLLPSVSNQQIDLAAGSIS
                     ITTDRLKMVDFSEGYLTGLLSVATLPDSAITSDKASVKDKRIGVVQGTIEDTYS"
BASE COUNT          327 a          538 c          588 g          355 t
ORIGIN      
        1 gccaccggaa acttcgcgcg ttgcgttgcc gccgagcgtg gatctggtga tcgtggggag
       61 cggctattgc gggttatcgg cggcggcgga agcggcgcgg caaggggcat cggttgccgt
      121 gctcgatgcc gccgaaatcg gtgcgggcgg cagcacgcgc agcggcggca tggtatcgag
      181 cgggcaaaaa ctggcgctga ccgacgccat ccgcggggta tcggcggaac ggctgggccg
      241 tttgatggcg gaatccacgg cgagtttcga ctatctcaag cacctgatag ccagtgaatc
      301 gctcgacgcc gatctgcaga taaccggccg cttttttggt gcgttcactc ccgggcattt
      361 cgagcggctg cgccagcaag gcgagctgct gcgcgagaaa accggcgtga ccgtgcatgt
      421 ggtggcgcgg gcggagcaac gcgccgtggt ggggtcggac tactactacg gcggcattct
      481 cgtggatgaa tacggcggcg tgcatacggc gaaatatcac cgcgcgctac gcgagcttgc
      541 acggcggtgc ggcgcaagcc tgcattcgca cgcggcggtg gaacggatag aacggacggg
      601 cgcgcgcttc gctgtccata cggcgcgcgg caagatcgat gcaaagcaag tgctggtcgc
      661 gactaacggt tatacaggcc ccttactgcc atttctctcg cgtcgcgtgc tgccggtggc
      721 gagctatcaa atcgccaccg aaccgcttcc acccggactc atggatgtac tgaatccggg
      781 ccgccgcatg atcagcgact ccaagcgcaa cctgttttat acccgtcctt cccccgacgg
      841 aacgcgcatg ctgttcggct cgcggccatc gtttcgcgaa gtcggtgaac gcgaggcggc
      901 gcgaatcctg cacaggaaga tggtgcagct ctggcccgct ttacgcgacg tgcgtatcac
      961 gcatgcatgg aagggatacg tcgcgatgac cggcgacaag ctcgcgcata ttggcgagcg
     1021 cgacggcgtt ttttacgcgc tcggctgcaa cggcaacggc gtcgcgttga tgagttacct
     1081 cgggcagcgc attgcaagaa cactatcaag cctcgatgcc gcgcccggcg cattcggcga
     1141 aggtccgttt ccgctgagtc cgggcggcat ggcgcgcagc ttgcgcgtgc cgatgggcac
     1201 cgtgctgtat cagctcgacg attgctggaa cggacgcgtg cgcggcgcgc tgtcctgacg
     1261 cctggttttc aagcctgtta gtgactctgc atcgactcgt tgtattttca attcatcgct
     1321 ggtttccatg gagcaacatc atgcggtttc gacactttct cagcctggtt tctctcgtcg
     1381 cttccttctc gttgatggcc gctaccagcg cccatgccga cgacctcggc acgcttgcgc
     1441 cgggcaaact gatggcaggc gtggacgcca ataacaagcc ctattcctac atcgataacg
     1501 gcaagatgac cggcttcgac gtggagttgc tgcgcgcggt tggcgcgaag ctgggattga
     1561 gcgtcgattt ccgcgcgcaa gacttcagcg gcttgctgcc gagtgtgtcg aaccagcaga
     1621 tcgacctcgc cgccggatcg atctcgatca caaccgaccg tcttaagatg gtcgatttct
     1681 ccgagggtta cctgaccggg ctgcttagcg tggcgaccct gcccgatagc gcgatcacaa
     1741 gcgacaaggc atcggtcaag gacaagcgca ttggcgtggt gcaaggtacg attgaagaca
     1801 cgtattcg
//
LOCUS       DATGBK010001475         2897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_179047, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001475 DATGBK010000000
VERSION     DATGBK010001475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179047"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..154)
                     /locus_tag="VKJ77_20575"
     CDS             complement(<1..154)
                     /locus_tag="VKJ77_20575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC47725.1"
                     /translation="MHSPHSRASGRDDFAVVGGGLCGRLVAWLLAGAGHRVALYDRGD
                     AAGTQSA"
     regulatory      complement(391..521)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            898..2649
                     /locus_tag="VKJ77_20580"
     CDS             898..2649
                     /locus_tag="VKJ77_20580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HMC47726.1"
                     /translation="MTTTPPGNTEQNADKVSAWSLIKPYWVSEERGIAWLLLIAIIAI
                     NMANVYISVRLNTWSASFYNALQSKNVHDFLPLLMVFTGLAFASILLAVYGRYLRQML
                     GFRWRQWLTHRYLEQWLGDKAFSRIERDRLADNPDQRISDDLQSFAATTLALSLDLLS
                     TIVTLVSFITILWTLAGALTFSLSGTQITIPGYMVWAAALYAVFGSLVIQRFGHPLVS
                     INYQAQKVEANFRFGLIRIRENAEQIALYDGIATETDSAKGIFQTIRQNYWQIMKYTR
                     RMTFVLSFYGQIAIIFPILVAAPRYFAGAFTFGVLMQISSAFGTVSDSFSWFINSYST
                     LVEWRATVNRLREFKRVMRSTHIKEAISPATVHGGINLHYTSTDALTTTGLKLALPNG
                     TPLANVADVVVKPGSRWLVQGPSGSGKSTLMRALAGLWPFGDGTIDAPVDAKLMFIPQ
                     QSYLPIGTLKAALSYPSTPEVFSDEACREALRACNLNAYGTRLEESGHWAKMMSPGEQ
                     QRLAAARVLLHKPDFMFLDEATSALDAENEMLIYTAIIDALPNAAIVSVAHRESVTGF
                     HESRIEIERAGAESAVV"
BASE COUNT          590 a          900 c          855 g          552 t
ORIGIN      
        1 cggccgattg cgtgccggcg gcgtcgccgc gatcgtacag cgccacacgg tgccccgcac
       61 ccgccaacag ccacgcgacc agccgcccgc acaagccgcc gcccacgacg gcaaagtcat
      121 ctcgcccgga cgcgcgggaa tgaggggagt gcatagtgga ttgggaatgc acaacggtgt
      181 tcacgatgac gatgcctcct cagcagacgc tgcagaacgc acgggagcac agcacggaaa
      241 tcgagatcgg gaggaatgcc cgtttcgaac cctggttgca cgcgcggcgc acaaaacata
      301 ttcagggacg aaaccacggc gagaaagcgg ctcgggagcg cattgcctgc ggctcctgtg
      361 ccagccaaat actggaagaa actggaaacg ctgcggtttc cggaaacttc cctcgccggt
      421 attacccgga tcgggtgcaa agggactctc tcagcctcgc cacgcgtttc tccgatcttt
      481 caaggaggca gacgcgcgcc gaagcacccc tgtttcgtcg tcgatcatta aaacataaaa
      541 gcgaaacgac ccgcaaaccg ggtggcccgc attagggaaa agccgggggc ccggcgcgga
      601 ccaaaccgga cagccttccc tttcgttcgc ggcgcgcgca ctctggcaca atgccgcgaa
      661 cgccgattcg tcttggttgg tctgctgcac acgcgtacgg caagcgcctc gctgttgcat
      721 tgcaccggca gcgcagtcgg gcaaggatta aggaacaatt aagccgcgcc cgaaacaata
      781 ctccgacgcg cgccgtcttt aatggcttct tacgatcatt gagacggagc aggaccatcc
      841 gcatcgatac cgccaagtca caacctgccg ccgagccggc acgtcttcag gaagctcatg
      901 accaccacac ctcccggcaa cacagaacaa aacgccgaca aagtgtcggc gtggagtctt
      961 atcaagcctt actgggtatc ggaagaacgc ggcattgcat ggcttttgct gatcgcgatc
     1021 atcgcgatca acatggcgaa cgtgtacatc agcgtccgcc tgaacacatg gagcgcgagt
     1081 ttctacaacg cgctgcagag caagaatgtc cacgactttc taccattgct gatggtgttc
     1141 accgggctcg cgttcgcgtc catcctgctc gccgtgtatg gccgatatct gcgccagatg
     1201 ctcggcttcc ggtggcgcca gtggctcacg caccgatacc tggagcaatg gctcggcgat
     1261 aaagccttct cccgtataga acgcgatcgt ctcgccgaca accccgacca gcggatcagc
     1321 gacgacctgc agtctttcgc cgcgaccacg ctggcgctgt cgctggattt gttatctacg
     1381 attgtcacgc tcgtgagctt catcacgatc ctgtggacgc tagcgggcgc actaaccttc
     1441 tcattgtccg gcacgcagat caccattccg ggctacatgg tttgggccgc cgcgctatac
     1501 gcggtgttcg gctcgcttgt gatccagcgc tttgggcatc cgttggtatc gatcaactat
     1561 caggcgcaga aagtggaagc gaacttccgt ttcggcttga tccgcatccg tgaaaacgcc
     1621 gagcaaatcg cgctctatga tggcatcgcg acggaaactg acagcgccaa gggcatcttc
     1681 cagacaatcc gccagaacta ttggcagatc atgaagtaca cgaggcggat gaccttcgtg
     1741 ctgtccttct acggccagat cgcaatcatt ttccctatcc tggtcgcagc tccccgctac
     1801 ttcgcaggcg cattcacgtt cggcgtgctg atgcagatca gttcggcgtt cggcacggtc
     1861 agcgactcgt tttcctggtt catcaatagt tattcgacct tggtcgaatg gcgcgccacc
     1921 gtgaaccggt tgcgcgaatt caagcgtgtg atgcgctcca cgcacatcaa ggaagcgatc
     1981 tcgccggcga ccgtccacgg cggcatcaac ctgcactaca cgagcaccga cgcgttgacc
     2041 acgaccgggt tgaagcttgc gttgccaaac ggtacgccgc tcgcgaacgt cgcggatgtg
     2101 gtggtgaagc cgggctcgcg ctggctggtg caaggtccgt caggttcggg caagagtacg
     2161 ttgatgcgcg cgctggccgg cctgtggccg ttcggtgacg gcacgatcga cgcccccgtc
     2221 gacgcgaagc tgatgttcat tccgcagcaa agctacttgc cgatcggcac gctgaaggcg
     2281 gcgctgagtt atccgtcgac accggaagtc ttctccgatg aagcctgccg cgaagccttg
     2341 cgcgcctgca acctgaacgc atacggcacg cgtctggagg agtcaggaca ctgggccaag
     2401 atgatgtcgc cgggtgagca gcagcggctc gcggctgccc gcgtgttgct gcacaagccg
     2461 gacttcatgt tcctcgatga agccaccagc gcgctcgatg ccgagaacga gatgctgatc
     2521 tatacggcca tcatcgatgc gttgccgaac gccgcgattg tcagcgtggc gcatcgcgag
     2581 tcggtgaccg gcttccacga gagccggatc gagatcgagc gggcgggggc tgaaagcgcg
     2641 gtggtttgag atcgaaccac gtgctccatg tccggtgagc acggccctga acgcgatgtg
     2701 aatccacaag caggttcttt ttgacctgct tttcccgttg aacgacgcac cgtagaatgc
     2761 tcctgcgcct gcacggcagg ctttgaacgg gagaccggat ttgcgagcgt tcgagtggtt
     2821 caccgagctg acgacgcgcg agcgccgcac gctttacgcg ggtttcggcg gttacgccgt
     2881 cgatgccttc gacttca
//
LOCUS       DATGBK010001476         2349 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_40999, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001476 DATGBK010000000
VERSION     DATGBK010001476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40999"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..551
                     /gene="glcE"
                     /locus_tag="VKJ77_20585"
     CDS             <1..551
                     /gene="glcE"
                     /locus_tag="VKJ77_20585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycolate oxidase subunit GlcE"
                     /protein_id="HMC47727.1"
                     /translation="FEMNDTDAVRKLNEWSGHPLPLTGSAWRDHTLALRLGGAEAAVK
                     AARTSLGGEVVDAVEAERFWCGLREQSDPFFAVIPPKSALWRLSLPSIAEPMHLPGPH
                     LMEWGGAQRWWITDADPQTVRISAKQAGGHATIFRSSAAYDRNAGVFTPLAAPLMKIH
                     RGLKAAFDPASIFNRGRLYPDF"
     gene            568..1794
                     /gene="glcF"
                     /locus_tag="VKJ77_20590"
     CDS             568..1794
                     /gene="glcF"
                     /locus_tag="VKJ77_20590"
                     /EC_number="1.1.99.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycolate oxidase subunit GlcF"
                     /protein_id="HMC47728.1"
                     /translation="MQTNLADFMRDTADGEEAEAILRKCVHCGFCTATCPTYQILGDE
                     LDGPRGRIYLIKQMLEGAPVTRSTQLHLDRCLTCRNCETTCPSGVQYGRLVEIGRKVV
                     EEKVERPFGQRVQRKLLANFLPNSKLFTPAMKLGQQFRPLLPKALRTKIPVAQKPLVP
                     PIGTHERTMLMLAGCVQPAMMPNVNIATARVFDALGIQILTAPDAGCCGAIRLHLGYN
                     DEALDDVRNNIDAWWPYVENGVEAIVMNASGCGATVKEYAHLLRNDPVYAEKAARIVD
                     LTRDLSEILPQYEDELTAMTRRRAVHTVAFHPPCTLQHGQQIRGHVENLLTALGIEVH
                     LPADSHLCCGSAGTYSVLQPKLSYALRDQKLDALEKLEPQMIVSANVGCIAHLQSGTS
                     TPVVHWIQLVEHLLYG"
     gene            1876..>2349
                     /locus_tag="VKJ77_20595"
     CDS             1876..>2349
                     /locus_tag="VKJ77_20595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018431892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HMC47729.1"
                     /translation="MSSSHVARHLEEVRQRIAKAAADASRDASTVMLLAVSKTFPAED
                     VRAAFDAGQRAFGENYVQEAVAKITELADLRSEIEWHFIGPLQSNKTKVVAENFDWVH
                     SVDRLKIAERLSDQRGGNMAALNVCLQVNVSGEASKSGVTPDEALALARAVAALPH"
BASE COUNT          468 a          725 c          740 g          416 t
ORIGIN      
        1 agttcgaaat gaacgacacc gacgccgtgc gcaagctcaa tgagtggagc ggccatccgt
       61 tgccgctgac cggcagcgcg tggcgcgacc acacgctcgc gttgcgcctg gggggcgccg
      121 aagccgcggt gaaagcggcg cggacatcgc tgggcggcga agtggtcgac gcggtcgaag
      181 ccgagcgttt ctggtgcggt ttgcgcgagc aatccgatcc attcttcgcg gtaataccgc
      241 cgaagtccgc tttgtggcgg ctgtcgctgc catcgattgc cgagccgatg catcttcccg
      301 gcccgcatct gatggaatgg ggcggcgcgc aacgctggtg gatcaccgac gccgatccgc
      361 aaaccgtgcg catcagcgcc aagcaggccg gtggccacgc gaccatcttc cgatcgagcg
      421 cggcgtatga ccgcaatgcg ggcgtcttca cgccgttggc cgccccgctg atgaagattc
      481 atcgtggcct gaaagccgca ttcgatcccg cgagcatttt caatcgcggc cgcctctacc
      541 ccgacttctg aactgaagaa acacgcaatg caaaccaacc tcgccgactt catgcgcgac
      601 acggccgacg gcgaagaagc cgaggccatc ctgcgcaagt gcgtgcattg cggattctgc
      661 acggcgacgt gcccgaccta ccagatactg ggcgatgaac tcgacggccc gcgtggccgg
      721 atctacctga tcaagcagat gctggaaggc gcgcccgtca cgcgcagcac gcaactgcat
      781 ctggaccgct gcctcacgtg ccgcaattgc gaaaccacgt gcccatcggg cgtgcagtat
      841 gggcggctgg tggagattgg ccggaaagtg gtggaagaaa aagtggagcg gccgttcggc
      901 cagcgcgtcc aacgcaaact gctcgccaac ttcctgccga acagcaagct tttcacgcct
      961 gcgatgaaac tcggccagca gttccggcct ctgctaccca aagcattgcg tacgaaaatt
     1021 ccggtcgcgc aaaagccact cgtaccgccg atcggcacgc atgagcgcac gatgctgatg
     1081 ctcgccggct gcgtccagcc ggccatgatg ccgaacgtca acatcgcgac tgcaagagtg
     1141 ttcgatgcct tgggcatcca gatcctgacc gcgccggatg ccggctgttg cggcgcgatc
     1201 cgcctgcatc ttggctacaa cgacgaagcg ctggacgacg tgcgcaacaa catcgacgcg
     1261 tggtggccgt atgtggaaaa tggcgtcgag gcgatcgtga tgaacgcatc cggttgcggc
     1321 gcaacggtga aggaatacgc gcatttgctg cgcaatgacc cggtctacgc ggagaaggcc
     1381 gcgcggatcg tcgatctgac ccgtgacctg tcggaaatcc tgccgcaata cgaagacgaa
     1441 ctgaccgcga tgacaaggcg gcgcgcggtc cacaccgtcg cgttccatcc gccatgtacg
     1501 ctgcagcacg gccagcagat ccgcggtcac gtggagaact tgctgacggc gctgggcata
     1561 gaagtgcatc ttcccgccga cagccatctg tgttgcggct cggccggaac gtactcggtg
     1621 ctgcagccaa agctctcgta cgcattgcgc gaccagaaac tcgacgcgct cgagaagctc
     1681 gagccgcaga tgatcgtatc ggcgaatgtg ggttgtatcg cgcatttgca gagcggaacg
     1741 tccacgcccg tggtgcactg gattcaactg gtcgaacatc tgctgtatgg ctaacgctga
     1801 cgggcgccgg ctgggtcggg gcgccgcatc cgtataatcg gagctctgct tactcgatat
     1861 gcggcgtccg attccatgtc ctcctctcat gtagcccgtc acctcgaaga agtccgccag
     1921 cgcattgcca aagcggcggc ggatgcttcg cgcgacgcat ccacggtaat gttgctcgca
     1981 gtatcgaaga catttcctgc ggaggacgtc cgcgcggcct tcgacgccgg acaacgcgcg
     2041 ttcggcgaaa actacgtgca ggaagctgtc gcgaagataa ccgagctggc ggatttgcgc
     2101 agcgagatcg agtggcattt cattggaccg ttgcagtcga acaagacgaa agtggtcgcc
     2161 gagaattttg actgggtgca ttcggtcgat cggctcaaga ttgccgagcg tctgtctgac
     2221 caacgcggtg gcaatatggc cgcgcttaac gtctgcctgc aagtgaatgt gagcggagag
     2281 gcgtcgaaaa gcggtgtgac gccagacgaa gcgctggcgc tcgcgcgcgc cgttgccgcg
     2341 cttcctcat
//
LOCUS       DATGBK010001477         1604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_248741, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001477 DATGBK010000000
VERSION     DATGBK010001477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1604
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248741"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1264)
                     /locus_tag="VKJ77_20600"
     CDS             complement(<1..1264)
                     /locus_tag="VKJ77_20600"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HMC47730.1"
                     /translation="MALGNLDFLFNKHPRPMWVFELKTLRFLAVNEAAMSLYGYDRAT
                     FLQMSLHEVRSDDEFGGDLNVAIEAIRDTTADHQSGPHKHVSADGSELTVRVESTYVV
                     FDGRPARLVMLVDLTEELTTQRTLHEREAQIRLFIDQLPAIMWTTDAELRFSSAAGNA
                     LTKIDVDPHSGIGVHVDAMFRTIDGKPGKVVPAHVAALLGNRVRFAGWWRDRYFDSVV
                     EPLYNEEHEIIGTIGVALDVTERHLGGRELERRTEELHAAQAIAHFGSWSMDLRSGDV
                     SWTPELYRIVGESPDDPSVDRTLFRYDHPDDTERVREAMATAEARHEPYDIEHRILRK
                     DGTTRVVREQGEFNFDDAGRAVRCVGTVLDITARKTAEDRLAYLAHHDPLTDLPNRTL
                     LQERLNAAVQKAERRGQNAAALFLDLDRF"
     gene            complement(1399..>1604)
                     /locus_tag="VKJ77_20605"
     CDS             complement(1399..>1604)
                     /locus_tag="VKJ77_20605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47731.1"
                     /translation="YLFHDDSAAAAGRTTRAQDRTMGIASDESRSGVLEPRSTSVATA
                     TGGPPDDPGVPRVPGTSREIDTL"
BASE COUNT          295 a          489 c          497 g          323 t
ORIGIN      
        1 tgaaacggtc gaggtccaga aacagtgcgg ccgcattttg tccacgccgc tcggcttttt
       61 gaaccgccgc attgaggcgt tcttgcaaaa gcgtccgatt cggcaggtcc gtcagcggat
      121 cgtgatgcgc cagataggcg agccggtctt cggcggtttt gcgggcggtg atgtcgagga
      181 cggtgccgac gcagcgcacg gcgcggcccg catcgtcaaa gttaaattcg ccctgctcgc
      241 gtacgacgcg cgtcgtgccg tctttgcgca gaatgcgatg ttcgatatcg tagggttcgt
      301 ggcgcgcttc ggccgtcgcc atcgcttcgc gcacgcgttc ggtatcatcg ggatgatcgt
      361 aacggaacag cgtgcggtcg acacttggat cgtccggcga ttcaccaacg atgcgataca
      421 attccggcgt ccacgacacg tctcccgaac gtaaatccat cgaccagctg ccgaaatgtg
      481 cgatcgcttg tgccgcgtgt aattcttcgg ttcggcgttc gagctcgcgc ccgccaagat
      541 gtcgctcggt aacgtcgagc gcgacgccga tcgtgccgat gatctcgtgc tcttcgttgt
      601 agagcggctc gacgacggaa tcgaaatagc ggtcgcgcca ccagcccgca aatcgtacgc
      661 gattgccgag cagtgccgcg acgtgtgcgg gaacgacttt gcccggcttg ccgtcgatcg
      721 tgcggaacat cgcatccacg tgcacaccga tgccgctgtg cgggtcgacg tcgatcttcg
      781 tgagcgcatt accggcagcc gacgaaaacc gcagttcggc atcggtcgtc cacatgatgg
      841 cgggcaactg atcgatgaac aggcgaatct gtgcttcgcg ctcgtgcagc gttcgctgcg
      901 tcgtcagctc ttcggtaagg tcgacgagca tgacaagccg cgccggccgg ccgtcgaaca
      961 cgacgtaggt tgattcgacg cgaaccgtaa gctcggaccc gtccgcgctt acgtgtttgt
     1021 gcgggccgct ttgatggtcg gcggtcgtgt cgcggatcgc ttcgattgcg acgttcaaat
     1081 cgccgccgaa ctcgtcgtcc gagcgcacct cgtgcaacga catctgcaag aacgttgccc
     1141 ggtcgtaacc gtagagcgac atagctgctt cattaaccgc aagaaagcgc agggttttca
     1201 attcgaaaac ccacatcggc cgcggatgct tgttgaacag gaaatcaaga tttcccaacg
     1261 ccatgtcaag catcaggggc gggtcgctac cgggctgtgg gaagtcggtc ttaagcagat
     1321 cgcaccaggg tggcaacaga gtatgaaagt aggcgaccgt tctaagcggc caccttacta
     1381 tcatcgaccg tttcggtcct aaagcgtatc gatttcgcgc gaagttcccg gcacacgcgg
     1441 cacgccgggg tcgtccggcg ggccacccgt ggccgtggcc acgctcgtgc tgcgcggctc
     1501 aagcacgccc gaacgcgatt cgtcgctggc gatccccatc gtccggtcct gtgcccgggt
     1561 cgttctaccg gccgccgcgg cactatcgtc gtggaagaga tacg
//
LOCUS       DATGBK010001478         1928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_41000, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001478 DATGBK010000000
VERSION     DATGBK010001478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41000"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VKJ77_20610"
     CDS             complement(<1..280)
                     /locus_tag="VKJ77_20610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013958625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RraA family protein"
                     /protein_id="HMC47732.1"
                     /translation="MTSINGEQDLLDRLDAVSFPTLGHFLENGFAESAIRALVSSVKI
                     VGRAVTLKLVNADAFAVNRALAELAAGDVLVIDMSGDHTHAPVGAVTGC"
     gene            complement(288..1640)
                     /locus_tag="VKJ77_20615"
     CDS             complement(288..1640)
                     /locus_tag="VKJ77_20615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007735945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47733.1"
                     /translation="MPQDRSAVQAAPLDSASPSMKKIAAASVIGTTVEWYDLFVFATA
                     SALVFNKVFFPGFVPLIGTLLAFGTFASAYLARIVGAALFGHFGDRLGRKSMLLVSLV
                     TMGIATFAIGLLPNYSSIGIWAPILLLGLRIVQGLALGGEWGGAVLMAVEHAPENKRG
                     LYGSWVQIGVPAGTLIANLAFLSCNAVMSNEALLSWGWRIPFLASALLVAVGLYIRMN
                     TSETPSFNQVKEAAAQVKLPLAEVLTRNWKQVLLGGVATMSTGTSFNLIVAFGLTYGT
                     QTLGFSRNAMLAIALISCAVCIVLLPLFGRLSDIVGRKPVIIGGIIAEALFAFPLFWL
                     LDMREFPFALLGYLLMMTAFAANYGPIATFLAELFGTKVRYSGLSISYMLSGLLGSAA
                     TPIITTALLSATGKGSSVAWYMIGSAVVSAGALLLLAETLKKEVPSNAQARSATVTLS
                     "
BASE COUNT          445 a          563 c          581 g          339 t
ORIGIN      
        1 cgcaacccgt cacggcaccc accggcgcgt gcgtgtgatc gccgctcatg tcgatcacga
       61 gcacgtcgcc ggcggcgagt tcggcgagcg cccggttcac cgcgaaagca tcggcgttga
      121 cgagcttcag cgtaactgca cgaccgacga tcttgacgct cgaaaccagc gcccggatcg
      181 cggattccgc gaaaccgttc tccaggaagt ggcctaaggt cggaaagctg acggcatcga
      241 ggcggtcaag caggtcctgt tctccattga tcgatgtcat ggcgagccta ggaaagggtg
      301 accgtcgcgc tgcgtgcctg cgcatttgaa gggacttcct tcttgagtgt ttcggccagt
      361 agcagtagtg cgccggcgga caccaccgcc gagccgatca tgtaccacgc aactgacgaa
      421 cctttacccg tcgccgagag taaggccgtc gtgatgatgg gcgtcgcggc gctgccgagc
      481 aggccggaca gcatgtagct gatcgacagt cccgaatagc gcaccttcgt gccgaacagt
      541 tcggcgagga aggttgcaat cgggccatag ttcgcggcga acgcggtcat catcagcaga
      601 taaccgagca atgcaaacgg gaactcgcgc atgtcgagga gccagaacag cgggaaggcg
      661 aacaacgctt cagcaatgat tccgccaatg atcaccggct tgcgtccgac gatatcggaa
      721 agacgtccaa acaagggcag caacacgata caaacggcgc atgagatcaa cgcgatggcg
      781 agcatcgcgt tgcgggagaa gccaagcgtc tgcgtaccgt aagtgaggcc gaaagccacg
      841 atcaggttga acgacgtgcc ggtcgacatg gttgcaacgc cacccagcag cacctgcttc
      901 cagttgcggg tgagcacctc ggcgagtggt agtttgactt gcgcggcggc ttccttgacc
      961 tggttgaacg atggtgtctc cgatgtattc atccggatat aaagcccgac tgcgaccagc
     1021 agcgcgctcg ccaggaaggg aatacgccat ccccacgaca gcagcgcttc attcgacatg
     1081 accgcgttgc agctcagaaa tgccaggttg gcgatcagcg tgccggccgg gacaccgatc
     1141 tgcacccacg aaccgtagag gccgcgcttg ttctccggcg cgtgttctac ggccatcaac
     1201 acggctccgc cccattcgcc gccgagcgca agaccttgca cgatgcgcag gcctagcagg
     1261 aggattggcg cccagatgcc tatcgacgaa tagttgggca acaatccgat cgcgaaggtc
     1321 gcgatgccca tggtgacgag cgagacaagc agcatcgact tgcgtccgag ccggtcgccg
     1381 aaatgaccaa acagcgccgc gccgactatc cgcgcaagat acgccgatgc aaacgtcccg
     1441 aacgcgagca acgttccgat caaggggacg aagccgggga agaacacttt gttgaagacc
     1501 agcgcggagg cggtggcgaa gacgaacagg tcataccatt cgaccgtcgt gccaatgaca
     1561 ctggctgccg cgattttctt catgctgggt gaagcggaat ccagaggagc ggcttggact
     1621 gcgctgcgat cttgaggcat tgcggttctc cataaagacg aacggttcag ggtggggtcg
     1681 tgcgctttag gcaccgcctg acgtctttat cgaaagccaa aaagaataag taaaacgctc
     1741 tttcctaatg cttggtataa gccccgcgaa tagtctgatc gcccccacgc cgattaacgg
     1801 atcattcttc tatgagcgtt tgagtaacgg aacgacctga cgacgctgtt gaagcgatgc
     1861 aaacgatagg tctctggccg aggcgtgaaa agtcggcagc tcaaacgacg cgccaaacta
     1921 cattttgt
//
LOCUS       DATGBK010001479         1580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_17023, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001479 DATGBK010000000
VERSION     DATGBK010001479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17023"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..500
                     /locus_tag="VKJ77_20620"
     CDS             <1..500
                     /locus_tag="VKJ77_20620"
                     /inference="COORDINATES: protein motif:HMM:NF026018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HMC47734.1"
                     /translation="AAAGAALAAYTVGLIPVVMIRSAVAPFYARKDTATPVRAALTGI
                     AVNVILKILLMGPLAQVGLALATAIGAWVNLLLVIGFAVRAGFLVLDRALMGSLARFV
                     MAGVATGIALWCTARFASPYFTQLGRFHDEASFGLLIVVGAIVYGAAILLMFGRAWLR
                     SLVRA"
     gene            568..>1580
                     /locus_tag="VKJ77_20625"
     CDS             568..>1580
                     /locus_tag="VKJ77_20625"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC47735.1"
                     /translation="MAPVKFGVGQSVRRKEDDALIRGRGRYTDDHAPSPAMHGLMLRS
                     PHAHAKFTIDASQARKLPGVGIIITAADIKDLGGLPCLFNLPDEPFTAPPYPILASDV
                     VRHVGDAVAFVVADTIAQARDAVEAIEINWTPLPAVVGAANAVKEGAPQVWAEHPGNV
                     LFDTSLGDKKATEAAFSKAHAIAEVSIVNPRVVTNYMETRAAVCEYDAKRDHLTLTVG
                     SQGSHRLRDILCQNILNIPVEKMRVICPDVGGGFGTKLFPYREYALVAVASRQLRKTV
                     KWTADRTDHFMGDAQGRDNVTTARMALAEDGKFLGMDVDLMGDMGAYLSTFGPYIPHG
                     GAS"
BASE COUNT          294 a          462 c          488 g          336 t
ORIGIN      
        1 ccgctgctgc tggcgcagcg cttgccgcat ataccgtggg gctcattccg gttgtcatga
       61 tccgcagcgc ggtcgcgccg ttctatgccc ggaaggatac agcaactccg gtgagagcgg
      121 cgcttacggg catcgctgtc aatgtcattc ttaagatatt gctgatggga ccgttggcgc
      181 aggtgggcct cgcattggcg accgcaatcg gggcgtgggt caatttgctg ttagtgatcg
      241 gcttcgcggt gagagctgga tttctcgttc tggatcgtgc cctgatggga tcgctcgcgc
      301 gatttgtgat ggctggcgtc gcgaccggca tcgcgctgtg gtgcaccgcg agattcgcga
      361 gcccgtattt cactcagctt ggccgatttc atgatgaggc ttcgttcggc cttctgatcg
      421 tggtcggggc gatcgtttat ggtgcggcaa ttctactcat gttcggccgt gcatggctgc
      481 gatccctggt acgtgcctga cgcagaattg aacttgccac tgatccgctg caatatagat
      541 tgaatctaga tttcagcagg agataccatg gctccagtca aatttggcgt tggacaaagc
      601 gttcgacgaa aagaagacga cgcactcatc cgcggccgcg gccgttatac cgacgatcac
      661 gcgccatcac cggccatgca cgggttgatg cttcgctcgc ctcatgctca tgcgaaattc
      721 accatcgatg catcgcaggc ccgcaagctt cccggcgtag ggatcatcat caccgccgcc
      781 gacatcaagg acctcggcgg attgccatgc ctgttcaact tgccggatga gccgttcacg
      841 gcgcccccgt atccgatcct cgcgagcgat gtcgtgcggc acgttggcga cgcggttgca
      901 tttgtcgtgg ccgataccat tgcccaggct cgcgatgcgg tcgaggcgat cgaaatcaat
      961 tggacgccgc tgccggccgt cgtaggcgct gccaatgcgg tcaaggaagg tgcgccacag
     1021 gtgtgggcgg agcatcccgg gaatgttctg ttcgatacat cgctgggcga caagaaggcc
     1081 acagaggccg cattttccaa ggctcacgca attgcggaag tgtcgatcgt caatccgcgc
     1141 gtcgtcacca actacatgga gacccgcgcc gccgtttgcg aatacgacgc caagcgcgat
     1201 caccttacgc tgacggtcgg aagccagggg agccatcggc tgcgcgatat cctgtgccag
     1261 aatattctca acatcccggt cgagaagatg cgcgtgatct gtccggatgt gggaggaggc
     1321 ttcggcacaa agctgttccc ctatcgggaa tacgcactgg tcgcagttgc gtcgcgtcaa
     1381 ttgcgcaaga ccgtgaaatg gaccgccgac cgcaccgatc atttcatggg cgacgcccag
     1441 ggccgcgaca acgtcaccac tgcgcgcatg gcgctggccg aagacggcaa gtttctcggc
     1501 atggacgtcg acctgatggg cgacatgggg gcgtatctgt cgacgttcgg tccctatatc
     1561 ccgcatggcg gcgccagcat
//
LOCUS       DATGBK010001480         3098 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_41016, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001480 DATGBK010000000
VERSION     DATGBK010001480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3098
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41016"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1505
                     /locus_tag="VKJ77_20630"
     CDS             <1..1505
                     /locus_tag="VKJ77_20630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004537186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HMC47736.1"
                     /translation="TAGDTNTPATVVHYLFDTLQQNTDCGTAEYNADGCAQGFSRVGR
                     FPQNSWVSGWPYWQGTQMDEQAMPILLAWRLGPGVYNALWPKILLTADYILSTGPWTF
                     QDRWEEDSGYSPSTIAAEVAGLVAAARIAVDNGDNARAASYLAAADYWQQNVTRWTYT
                     NTGFYGSGKYYVRINPASKSQAGSSGISSQIYEPTSYPDSGQSFLVKNGGGMQDERAV
                     VDGGFLELVRMGVKRANDPTIVGTLAAYDAVLAMNVTGSNPAWFRYNFDGYGEHNDGS
                     NYDGTGVGRAWPIFTAERGMYSIASSGVGSSGASYLNAIKTYATPEGFIPEQIWTNNM
                     TLPGNWQVVTPPGFTAGAPTKSMAPLNWAMGEYISLLASIHAGRVVDIPSIVCARYSN
                     CVIAPVSGQAGVSISVQAATQPGQYMYVTGSTAALGNWSTDLGLPVDPANYPVWSNTV
                     NLPAGSSVQYKYYRKNADGSVTWENLPGGGNRTLNVPATGGTALNDTVGW"
     gene            2070..2804
                     /locus_tag="VKJ77_20635"
     CDS             2070..2804
                     /locus_tag="VKJ77_20635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HMC47737.1"
                     /translation="MLNLQSDLHGNHLLGALPAHEWQALTPHLELVQLRTGQLLCDSG
                     QRIHHVYFPTTAIISLLHSMEDGSSAEIAAIGREGMTGVPILTGGDTMPTRVQVQCPG
                     FAYRMSASALREQFNRSDFLRRLMLLHMQALLTQIAQTAACNRHHSLSKQLCRWLLIE
                     IDRTPSNEFHATQQMIADMLGVRREGVTEAAGKLHDAGLIHHSRGCIKVLDRAGLEAR
                     ACECYGIVKREFDRMLPRVRQTEEVC"
BASE COUNT          672 a          902 c          948 g          576 t
ORIGIN      
        1 tcacggctgg cgatacgaac acacctgcca cggtcgtcca ttacctcttc gataccctgc
       61 aacagaacac cgactgcggc acagccgaat acaatgccga cggttgcgcg caagggttca
      121 gccgcgtcgg ccgcttcccg cagaattcgt gggtgagcgg ctggccgtat tggcagggga
      181 cgcagatgga cgagcaggcg atgccgatcc tgctcgcgtg gcgtctcggc ccgggcgtct
      241 ataacgcgct gtggccgaag atccttctga ctgcagacta cattcttagc acgggtccat
      301 ggacctttca ggatcgatgg gaggaggact cgggctattc gccatcgacg atcgccgctg
      361 aagtggcggg ccttgttgcc gctgcgcgca tagccgttga caacggcgat aacgcacgcg
      421 cagccagcta ccttgccgcc gccgactatt ggcaacagaa cgtgacgcgc tggacctaca
      481 ccaacaccgg cttttacggc agcggcaagt actacgtgcg catcaatccg gcgagcaaga
      541 gccaggcggg gagctcgggt atcagttcgc aaatctacga gccaaccagc tatcccgact
      601 cggggcaaag cttcctcgtg aagaacggtg gcggcatgca ggatgaacgc gcggtcgtcg
      661 atggtggttt cctcgagctg gtacgcatgg gtgtgaagcg tgccaacgat cccaccattg
      721 ttggtacgct cgccgcctat gacgccgtgc tcgcgatgaa cgtaacgggc tcgaacccgg
      781 cgtggttccg ctacaacttc gacggctacg gtgaacacaa cgacggcagc aattacgacg
      841 gcaccggcgt cggccgcgca tggcccatct ttacggccga gcggggtatg tacagcatcg
      901 cgagcagtgg agtgggtagc agcggtgcct cgtaccttaa cgcgatcaag acctacgcga
      961 cgccggaagg cttcatcccc gagcagatct ggaccaacaa catgacgctg cccggcaact
     1021 ggcaagtcgt tacaccgccg ggattcacgg ccggtgcgcc gaccaaatca atggcgccgc
     1081 ttaactgggc gatgggcgag tacatcagcc tgctggcgtc gattcacgcg ggcagggtcg
     1141 tcgatattcc atccatcgtg tgcgcgcgtt atagcaattg cgtgatcgcg ccggtaagcg
     1201 ggcaggccgg cgtctcgatc agcgtccagg ccgcgacgca gccggggcag tacatgtatg
     1261 taaccggaag cacggccgcg ctcggcaact ggagcaccga cctcggactg ccggtggacc
     1321 cggccaacta tccggtatgg agcaacacgg tgaatctccc ggcggggagc agcgtgcaat
     1381 acaagtacta ccgcaagaac gccgacggaa gcgtgacatg ggagaacctg cctggcggcg
     1441 gcaatcgcac gctgaacgtg ccggcgacgg gcggcactgc attgaacgat acggtcggct
     1501 ggtgagcctg gagcggtggt atgtgccttg agcagggatc gctcctctgc cggttccagg
     1561 cgatgcaaga agcgaacatc gtccggggca cgtcaaatcg gacaaccatt tctgtatcac
     1621 ttttaaaacg gccgacaaat gcttatgcga tcgcggtttg aaggtcgcaa aggcgcggtt
     1681 tcaaatgacg ttgcaaaaac cggatgcgcc tccagtaagg gattgagcgc acggaagcgt
     1741 ttgcgcgatt aatcggacgg attgcgccgg tttgaccgtg caccgttcaa gagtgaatca
     1801 aaaacgtttc cagccccact gtgcgctgct gcatatcccg gggggcacta tgctggtact
     1861 gggtttgcgc ctgctggcac ggtcctcgct aaatgtgtgg tgcagcacta gccaatgtcg
     1921 aaacttgaaa atgaacaaac gactttgaca gagctgctac ggggccggtc gctacatgtc
     1981 ttagatagat gccatcagat gcatcacgag acgcgcagcg gaccggaata aaaaagtaag
     2041 gcgcacagcg caatcgaggg aacaaaatca tgttgaatct tcaatccgac ctgcacggca
     2101 atcatctgtt gggcgcgctt ccggcgcacg aatggcaagc gcttacgccc catctcgaac
     2161 tcgtccagct tcgtacgggc caactgcttt gcgattcggg acagcgcatc catcacgtgt
     2221 atttcccgac gacggccatc atctctttgc ttcactcgat ggaagacggc agctcagcgg
     2281 aaattgcagc catcggacgt gaaggcatga ccggcgttcc tatcctcacc ggcggcgata
     2341 ccatgccgac gcgcgtccag gttcaatgcc cgggcttcgc ttatcgcatg agtgccagcg
     2401 cgttgcgtga acagttcaat cgctcggatt tcctgcgccg cctgatgctg ctgcacatgc
     2461 aagcgctgct gacgcaaatt gcgcagaccg ctgcgtgcaa ccgtcaccac tcgctgagca
     2521 agcagttgtg ccgctggttg ctgatcgaga ttgaccgtac gccgtccaac gaattccacg
     2581 cgacgcagca gatgatcgcc gacatgctgg gcgtgcgtcg cgaaggggtc acggaagcgg
     2641 ctggaaagct ccatgacgcc ggtttgatcc atcacagccg tggttgcatc aaggtgctcg
     2701 atcgcgccgg tctggaagcg cgtgcgtgtg aatgctatgg catcgtcaag cgcgagttcg
     2761 accgtatgct gccgcgtgtg cgccagaccg aggaagtctg ctgaggaatg cccaaaagaa
     2821 gagcgctccc atcgcgggca gatcatccac cgttacattg cgcaggttgg acgatcgcgc
     2881 ccctcggctt ggattggccg acaaggaccg tctccagagt cgggcgtcgc gacgatgctt
     2941 cttttacaag tcatgctgca ggcgaggcat tatcaagcgc gggtcttcgg cgcatgagaa
     3001 gcaacagcag aaggaatgct gttgcggaag acaaaatggc aacctctagc aaaatgtcga
     3061 taccgaatcg agtcaacaac gcgatgaaaa gcggtggt
//
LOCUS       DATGBK010001481         1982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_17060, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001481 DATGBK010000000
VERSION     DATGBK010001481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1982
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17060"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VKJ77_20640"
     CDS             <1..249
                     /locus_tag="VKJ77_20640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47738.1"
                     /translation="AVDKLQNAETATHVNRGLVGRWADRFAPLGKIKSVKEVTPAGAA
                     ARRHEFTVTFEKGVYHEDLGLDPEDKIVHFNATQNPKK"
     gene            246..1217
                     /locus_tag="VKJ77_20645"
     CDS             246..1217
                     /locus_tag="VKJ77_20645"
                     /EC_number="4.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014618755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threo-3-hydroxy-L-aspartate ammonia-lyase"
                     /protein_id="HMC47739.1"
                     /translation="MTATTLSVTIDDVRAAAARLRGVAHRTPVVTSRTLDERTGATVF
                     LKCENLQRMGAFKFRGAYNRIVQLTPDERKRGVVAFSSGNHAQGVALSAQLLGVPATI
                     VMPDDAPAAKVAATKGYGAEVVMYDRATMNRSEIAEKIASERGATVVPPYDDPHIIAG
                     QGTAVLELIEETGPLDILLVCLGGGGFLSGSAIAATALSPGIAIYGVEPEAGDDWLQS
                     WQKGERVTIPVPKTIADGQQTQAPGELTWPIARALCAGIVTVTDDEIRATMRFAFERL
                     KLVMEPSGASALAALMFGKIDARGARVGVTISGGNVDPTVFSDALKA"
     gene            1279..>1982
                     /locus_tag="VKJ77_20650"
     CDS             1279..>1982
                     /locus_tag="VKJ77_20650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008642547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47740.1"
                     /translation="MPFSRKKFLAANALAGVGTLAAASPAAAFAAPAKATDTPTLSFD
                     PRDPNISYDLVVRGGTVIDPGNKLHAPRDIVVKNGQIAGVLAPGTTVKAAQTIDATGN
                     IVTPGLVDLHCHYYHQVSGIGLPADEMMPMTATTTGVDAGDAGYSTFSGFRHFVIGQA
                     RTRHFAFIHIASIGLAGDPINVGELFNIDFADVPKCAKAVAENRDVVLGVKVRLSKNV
                     VANNGIEPLRRAIAAAT"
BASE COUNT          387 a          591 c          638 g          366 t
ORIGIN      
        1 gcggtcgata aattgcagaa cgccgaaaca gcaacgcatg ttaatcgcgg tttggtcggc
       61 cgctgggccg atcgcttcgc gccgctcgga aaaattaagt cggtgaagga agtgacgccg
      121 gcgggggccg cagcgcgccg ccacgagttc accgtgacct ttgagaaagg cgtttaccac
      181 gaagacctgg ggctcgatcc cgaagacaag atcgtgcact tcaacgcaac gcaaaatccg
      241 aagaagtgac cgcaacgacg ctgtcggtca cgatcgacga cgttcgcgcc gccgcggctc
      301 ggctgcgcgg cgttgcgcat cgcacgccgg tcgtcacctc acgaacgctc gacgagcgaa
      361 ccggtgcaac ggtttttctc aaatgcgaaa acctgcagcg catgggcgcg ttcaaattcc
      421 gcggtgcata taatcgcatc gtgcagctga cacccgacga acgtaaacgc ggcgtcgtcg
      481 cattttcaag cggaaaccat gcgcagggtg ttgcgttgtc ggcccaactg ctcggcgttc
      541 ccgcaacgat cgtcatgccc gacgatgcgc ccgcggcaaa agtcgcggcg accaaaggct
      601 acggcgccga ggtcgtgatg tacgatcgcg cgacgatgaa ccgctcggag atcgccgaga
      661 agatcgcttc ggagcgcggc gcaacggtcg tgccgccgta tgacgatccg cacattattg
      721 cgggtcaggg tacggccgtg ctcgagctta tagaagagac cggtccgctg gatatcttgc
      781 tcgtgtgttt aggcggcggc ggattcttgt cgggctcggc catcgccgcg accgcgcttt
      841 cgccggggat tgcgatctac ggcgtcgagc ctgaggcggg cgacgactgg ctgcagtcgt
      901 ggcagaaagg cgagcgtgtc acgatccccg ttcccaagac gatcgccgac gggcaacaaa
      961 cgcaagctcc gggcgaactt acctggccga ttgcgcgcgc gctttgcgcc ggcatcgtta
     1021 cggtgaccga cgatgaaatc cgcgcgacga tgcgttttgc attcgaacgt ctcaagctgg
     1081 tgatggagcc cagcggcgcg agcgccctgg ccgcgctcat gttcggtaaa atcgacgccc
     1141 gcggggcgcg cgtgggcgtg acgataagcg gcggaaacgt cgatcccacg gtcttttccg
     1201 acgctctaaa agcttagagg agccggcggg cgagcctgca atcaatcgcg ctaccccttt
     1261 gtgcaggtga ggtgtacttt gccgttttca cggaagaaat ttcttgctgc gaacgcgctc
     1321 gcgggtgttg ggactttggc tgcggcttca ccggcagcgg ccttcgccgc gcccgcgaag
     1381 gcgacggata cgccgacgct gagtttcgat ccgcgcgacc cgaatatcag ctacgatctg
     1441 gtcgtccgtg gcggcaccgt gatcgatccc ggcaacaagc tccacgcacc gcgtgatatc
     1501 gtcgtcaaaa acggccagat tgcgggcgtg cttgcgccgg gaacgacggt gaaagcggcg
     1561 cagacgatcg atgcgaccgg caacatcgtg acgccgggct tggtggattt acactgccat
     1621 tactaccatc aagtgtccgg tatcggtttg cccgccgacg agatgatgcc gatgacggca
     1681 acgacgaccg gtgtcgatgc cggagatgcg ggctactcga cgttctcggg cttccggcat
     1741 ttcgtgatcg gtcaagcgcg cacgcgtcac ttcgcgttca tccacattgc gtcgatcggc
     1801 ctggccggcg atccgatcaa tgtaggcgag ctgtttaaca tcgatttcgc cgacgtgccg
     1861 aagtgtgcga aggccgttgc ggaaaaccgc gatgtcgtgc tcggcgtgaa agttcgcttg
     1921 tcgaaaaacg tcgttgcgaa caacgggatc gaaccgttgc gacgcgcaat tgcggcggcg
     1981 ac
//
LOCUS       DATGBK010001482         1627 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_132905, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001482 DATGBK010000000
VERSION     DATGBK010001482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132905"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(235..1236)
                     /locus_tag="VKJ77_20655"
     CDS             complement(235..1236)
                     /locus_tag="VKJ77_20655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007740348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HMC47741.1"
                     /translation="MKINEGFLQSMQGAMKLLRSRGPKEATAALQRALGAHAQATPQT
                     NPDAPAVTYPGAFTTHTFTNAAGHRSYKLYVPKQHSGRPLPLVVMLHGCTQDADDFAA
                     GTQMNALAEREGCIVVYPVQPQGANASKCWNWFKPADQRRDSGEPALIAGITREVISK
                     HAVDPARVYVAGLSAGGAMAAIMIQAYPDLYAAACVHSGLAVGAAHDLQSALAAMRGG
                     KSPGAPRAAAPKRPLIVFHGDADATVHPSNAAELLRGFGAQAIVFDETSHGEAGKRKS
                     TVERLKSAEGVDAELWLIHGAPHAWAGGSGNGSYTDATGPDASATMMRFFLDHPLRG"
     gene            complement(1281..>1627)
                     /locus_tag="VKJ77_20660"
     CDS             complement(1281..>1627)
                     /locus_tag="VKJ77_20660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HMC47742.1"
                     /translation="DLGQIDLLVEEGFYSNRTDLIRTAIRNQLATHSQVVNETVTRRA
                     LVLGMQHFSKGDLEAARAAGERFDIQVLGLASIAADVSAELALDTIASIVVLGAFHAS
                     PAVKAALAGRIA"
BASE COUNT          311 a          525 c          464 g          327 t
ORIGIN      
        1 ccgcgcagtg ggcgaaatgg atcaggtgac gcagcagaac gcggcgctgg tggaagaagc
       61 ggcagcggcg gcccattcgc tgaaggatca ggtcgatgtt ctgcgtgaag cgatcgggag
      121 tttttcgctg ccggcttgag agggtgtagt cagcttcaag ataaacgaaa gggccattcg
      181 catggccctt tcgtcttgaa tccgaagaca ctatgttttc gaaggcgtta ctggtcaacc
      241 tcgcaacgga tgatcgagga aaaatcgcat catggtggcg ctcgcatccg gacctgttgc
      301 atcggtgtac gaaccattcc cactaccccc tgcccacgcg tggggagcgc catggatgag
      361 ccacaactcg gcatcgactc cctctgctga tttcagtcgt tccaccgtgc tcttacgctt
      421 acccgcttct ccatgggaag tctcgtcgaa gacgatggcc tgagcgccga aaccgcgcaa
      481 caactcagcc gcgtttgatg gatgcacggt tgcgtcggca tcgccatgaa aaacaatcag
      541 cggtcgcttc ggtgccgccg cgcggggagc gccgggtgac tttccacctc gcatggccgc
      601 cagcgccgat tgcaaatcat gggccgcccc cactgccaat cctgaatgca cacacgccgc
      661 ggcatacaaa tccggatacg cctggatcat gatggcggcc atcgccccgc ccgccgacaa
      721 tccggccacg tatacgcgcg ccgggtcaac tgcgtgcttc gatatcactt ctcgtgtaat
      781 gcctgcgatc agagccggct cgccgctgtc acgtcgctga tcggcgggct tgaaccagtt
      841 ccagcacttc gatgcgttcg ccccctgcgg ctgaaccgga tacaccacga tgcatccttc
      901 ccgctccgcc agcgcgttca tttgcgtgcc tgcggcgaag tcgtcggcgt cctgcgtgca
      961 gccatgcagc atcaccacca gcggcagcgg ccggccgctg tgctgcttcg gcacgtagag
     1021 cttgtagctc cgatgaccgg cggcattagt gaacgtatga gtcgtgaagg cgcccggata
     1081 cgtgacagcc ggggcatccg gattcgtttg aggcgtggct tgagcgtgcg ccccaagcgc
     1141 acgctgcagc gccgccgtcg cttccttcgg gccgcgtgag cgcagcagct tcattgcacc
     1201 ctgcatcgat tgcaggaatc cttcgttgat tttcattatc tttcccgttg ttccctgcta
     1261 ttgcttgtct gccagtacca ctaggcaatc cggccagcca gcgccgcttt caccgcaggc
     1321 gaggcatgaa aagcgccgag cacgacgatc gatgcgatcg tgtccagcgc caattcggca
     1381 gacacgtcgg cagcaatgct cgcgagtcca agcacctgaa tgtcgaaccg ttcacccgcc
     1441 gcacgcgccg cttcaagatc acctttggaa aagtgctgca tgcccagcac cagcgcccgc
     1501 cgcgtcaccg tttcattcac gacctgagag tgtgtcgcca gttgattcct gatagccgtg
     1561 cgaatcaggt ccgtgcggtt ggaataaaaa ccctcttcca ccagcaggtc gatctgcccc
     1621 aagtcca
//
LOCUS       DATGBK010001483         2928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_272468, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001483 DATGBK010000000
VERSION     DATGBK010001483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272468"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            24..1073
                     /locus_tag="VKJ77_20665"
     CDS             24..1073
                     /locus_tag="VKJ77_20665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006296589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47743.1"
                     /translation="MTDDRDIGGPAQPLLSVKNVVRHFPLGNKGLPFLKDARNVVRAV
                     DNISFDVLKGETLGVVGESGCGKSTMARLMMQLLLQDSGELIFDGEMVGSRALPLREF
                     RRQVQMVFQDSFSSLNPRMTIEDSVAFGATVHGVSPKDAIARGRDLLARVGLDPVRFA
                     GRYPHELSGGQRQRVNIARALALGPRLVILDEAVSALDKSVEAQVLNLLADLKAEFAL
                     TYVFISHDLNVVRYISDRLVVMYLGEIVEIGTAEDVFAHALHPYTRALLNSMPSVDPT
                     RRTTVAPLFGDPPNPIDPPSGCRFHTRCPQAQDVCSKRVPAVSTVGGGQVMCLEYEPD
                     SGYVPISITAAREVA"
     gene            1073..2095
                     /locus_tag="VKJ77_20670"
     CDS             1073..2095
                     /locus_tag="VKJ77_20670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006225743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47744.1"
                     /translation="MNTKPEVSISLRDLKVRFITPARTIHAVNGVDLEVGRGEVVALL
                     GESGSGKSVTLRAIMRLHSEKTTQMEGGLDVEGQDVLKLSRRQLSDLRGKVVSMIFQE
                     PLLALDPVYTLGAQIAEMVRRHQGVSKAEARKRALALFEKVRIPSPERRLDAYPHEMS
                     GGMRQRAMIALALSCEPRVLLADEPTTALDATVQIQILLLLRDLQQELGLSIVFVTHD
                     IGAATEVADRIAVMYAGRIVEQGPALALLTEPRHPYTIALLKGRTQGAMKKGVRLETI
                     GGAPPDLSALPPGCAFAPRCVHAIDRCLQTQPEERLVGSAHSARCIRVDEIAALESKT
                     ESVPTH"
     gene            2103..>2928
                     /locus_tag="VKJ77_20675"
     CDS             2103..>2928
                     /locus_tag="VKJ77_20675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017452821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HMC47745.1"
                     /translation="MTPDLASYRAFVPYPDQPVPHAASGRLTGLTFGVKDIFDVAGYP
                     TGCGNPHMLAMSGIKTANAPVVTALLAAGAAFAGKTYTEELAFSMTGKNAHFGAPRNG
                     AAPDRVTGGSSSGSASVVSNGLCDFALGTDTGGSVRAPASHCGLIGLRPTHARVSLDG
                     CMPLSPGFDTCGWFTRDIETFARVGNVLLGEDTATLPSTPQVCLPREVLAGLPEPVVK
                     VFFATLDRVKTCFGSIESVDIMTPSTDALYWAFRYAQGFQAWQSQGKSIERFDFQLG"
BASE COUNT          530 a          939 c          916 g          543 t
ORIGIN      
        1 gagatcaaat gatgccctcg ctcatgacag acgatcgtga catcggcggc ccggcccagc
       61 cgttgctgag cgtaaagaat gtggtccggc attttccgct cggcaacaaa gggctgccgt
      121 ttctaaaaga cgcgcgcaac gtggtgcgcg ccgtcgacaa catctcgttc gatgtattga
      181 agggtgagac ccttggcgtg gtcggcgaat caggctgcgg caaatccacc atggcgcggc
      241 tgatgatgca actgctgctg caggatagcg gcgaacttat cttcgacggc gagatggtcg
      301 gttcccgcgc cctgcccttg cgcgagtttc gccgtcaggt gcagatggtg ttccaggaca
      361 gcttctcgtc gctcaatcca cgcatgacga tcgaggactc agtcgcgttc ggcgcaacgg
      421 ttcacggcgt ctcgccgaaa gacgcaatcg cacgcggacg cgacctgctc gcgcgcgtcg
      481 ggctcgatcc cgtacggttc gcgggacgtt acccgcacga actctcgggc ggtcagcgac
      541 aacgcgtgaa tattgcacgg gcgttggcgc tcggtccgcg cctcgtgatt cttgatgagg
      601 ctgtgtcggc tctcgataag tcagtggaag cccaagtgct gaacctcctc gccgacctca
      661 aggcggaatt cgcactgacc tatgtcttca tcagccacga cctgaacgtg gtgcgataca
      721 tctcggaccg gctggtggtg atgtaccttg gcgagatcgt ggaaatcggc acagcagagg
      781 atgtgttcgc gcatgcgctg catccgtata cgcgggcctt gctcaactcc atgccgagcg
      841 tcgatccaac gcgccgcacg accgtcgccc cgctctttgg cgatccgccc aatccgatcg
      901 acccacccag tggctgccgc tttcacacgc gttgtccgca ggcgcaggac gtctgcagca
      961 aacgcgtacc ggccgtctcc acagtcggcg gaggacaagt gatgtgcctt gaatacgagc
     1021 cggacagcgg ctacgttcca atctcgatta cagctgcgcg ggaggtcgcg tgatgaacac
     1081 gaagccggag gtcagcatca gcctgcgcga cctgaaggtc cgctttatca cgcccgcccg
     1141 gacgatccac gctgtcaacg gcgtcgacct ggaagtggga cgcggcgagg tggtcgccct
     1201 gcttggcgaa tccggctcgg gcaagagtgt cacgctgcgc gcgatcatgc ggctgcattc
     1261 ggagaagact acgcaaatgg agggcggact tgacgtcgaa ggccaggacg tcctgaagct
     1321 ctcacgccgg cagctttcgg atctgcgcgg gaaggttgta tcgatgatct tccaggagcc
     1381 cttgctcgcc cttgatccgg tctacacgct cggtgcgcag attgccgaga tggtgcggcg
     1441 gcatcaggga gtatcgaagg ccgaagcgcg caagcgagca ctagcgttat tcgaaaaggt
     1501 ccgcattcca agccccgaac gtcggctgga tgcgtatccg cacgagatgt cgggcggcat
     1561 gcgccagcgc gcgatgatcg cgctcgcgtt gtcgtgcgaa ccgcgtgtcc tgctcgccga
     1621 cgagccgacc accgcgctcg acgcgaccgt gcagatccag atcctgctgc ttctgcgcga
     1681 cctgcaacag gaactgggcc tgtcgattgt gttcgtcacg cacgacatag gcgctgcgac
     1741 cgaggtcgcg gatcgcattg cggtgatgta cgcgggccgg attgtcgagc aggggccggc
     1801 gctcgcgctg ctgaccgaac cgcggcaccc ctacaccatc gctctgctca aaggccgcac
     1861 gcaaggcgcc atgaaaaaag gcgttcgact ggaaacgatt ggtggtgcgc cgcccgacct
     1921 ttccgcgttg cccccgggct gcgcgttcgc gccgcgttgc gtgcatgcga tcgaccgctg
     1981 cttgcagact cagcctgaag aacgtctggt cggtagcgcg cattcggccc gctgcatccg
     2041 ggtcgacgaa atcgccgcgc tggaatcgaa gaccgaatcc gtccctactc actaacaacg
     2101 aaatgacacc agatctcgcc tcctatcgcg ctttcgtacc gtaccccgat cagcctgtac
     2161 cccatgccgc gagcggccgg ctcacaggcc tgacgttcgg cgtaaaggac atcttcgatg
     2221 tggccggtta ccccaccggc tgcggcaacc cgcacatgct ggccatgtcc ggtatcaaga
     2281 cggccaacgc gccggttgtc acggccttgc tcgcggccgg cgccgccttc gctggcaaaa
     2341 cctatacgga ggaactcgcg ttctcgatga ccggcaagaa cgcgcacttc ggcgcgccgc
     2401 gcaatggcgc cgcgccggac cgtgtgaccg gcggatcgag ttcaggttcg gcgtcggtgg
     2461 tatcgaatgg gctgtgcgat ttcgcgctcg gcaccgacac cggcggctcg gtccgcgcgc
     2521 cggcaagcca ctgcggcctg attggcttgc ggccgaccca cgcgcgcgtg tcgctcgacg
     2581 gctgcatgcc gttgtcaccg ggattcgaca cctgtggctg gttcacgcgc gacatcgaaa
     2641 catttgcacg cgtgggcaac gtattgctcg gcgaagacac cgcgacgctc ccatcaacgc
     2701 cgcaagtctg cttgccgcgc gaggtgctgg ccggactgcc ggaacctgtg gtgaaggttt
     2761 tcttcgcgac actcgaccgc gtcaagacat gcttcggatc gatcgaaagc gtcgacatca
     2821 tgacgccctc caccgacgcg ctctactggg cgtttcgcta cgctcaggga tttcaggcgt
     2881 ggcaaagcca gggtaaatcg atcgagcgtt tcgacttcca gctcggcc
//
LOCUS       DATGBK010001484         2379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_110092, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001484 DATGBK010000000
VERSION     DATGBK010001484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110092"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..942)
                     /locus_tag="VKJ77_20680"
     CDS             complement(<1..942)
                     /locus_tag="VKJ77_20680"
                     /EC_number="3.6.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004203737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0019700 - organic phosphonate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate diphosphatase"
                     /protein_id="HMC47746.1"
                     /translation="MLIKNARIVTRDEEFTGVVRVADGCITEVAPGTTSVAEAEDWGG
                     DYLLPGLVELHTDNIEKHIAPRPGVLWNHDAAILVHDAQVATAGITTVFDALGIGSRG
                     GVGVRGKEIQTNCARSIERLAETGMLRVDHFLHLRCEVAAADVLEVFDGLVSHPLLRL
                     VSVMDHTPGQRQWHDPVQWRKYQERHGKWTDEHASTVLNELTDDQHRYARVHRSEIVA
                     RCKTLGVPLASHDDTSIEHVLEAVDDGIVLAEFPTTLAAAQAARDHGIATIMGAPNVV
                     RGGSHSGNVSALEMARAGLLDILSSDYVPSSLLTATFE"
     gene            complement(936..1730)
                     /gene="phnL"
                     /locus_tag="VKJ77_20685"
     CDS             complement(936..1730)
                     /gene="phnL"
                     /locus_tag="VKJ77_20685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018835 - carbon phosphorus lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019634 - organic phosphonate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnL"
                     /protein_id="HMC47747.1"
                     /translation="MNANADLSNELAFAERAALMLRARGVEKTFTLHQQGGVRIAALS
                     GVSLDVERGECVVLSGPSGAGKSTLLRCMYGNYLLTRGSVAIRDDSRSSQYLSLSDAL
                     PHDVIRLRRTTMGYVSQFLRAIPRVSALDLVSEPLISRGTDEEEARVRAGALLERLNV
                     ARRLWTLAPATFSGGEQQRINIARGLIAEQPLLLLDEPTASLDAENRQVVADLIVEAR
                     ERGAAIVGIFHDEDTRERVATRVIQLNAPAGQAATASTITETLQTC"
     gene            complement(1740..>2379)
                     /locus_tag="VKJ77_20690"
     CDS             complement(1740..>2379)
                     /locus_tag="VKJ77_20690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC47748.1"
                     /translation="TLLNALALRTPVNDGALHYRSVEHELLDLFALPMPRRRMLARTD
                     WGFVHQNARDGLRHGVSAGANIGEPLMANGARHYGRLRETASDWMNQVELDATRIDEL
                     PSAFSGGMQQRLQIARNLVTKPRLVFMDEPTAGLDVSVQARLLDLLRTLTAKLHLAAL
                     IVTHDIGVARLLAHRLMVMKDGRVVESGLTDQVLDDPQHPYTQTLVASVLPV"
BASE COUNT          475 a          777 c          685 g          442 t
ORIGIN      
        1 ttcgaacgtg gcggtcagca aactcgacgg cacataatct gacgacaaga tgtcgagcag
       61 ccccgcgcgc gccatctcga gcgcggacac gttgcccgaa tgcgagccgc cccggacgac
      121 gttcggcgca cccatgatcg tcgcaatacc atgatccctc gctgcctgcg ccgcggccag
      181 cgtcgtggga aattcagcga ggacaatacc gtcatccacc gcttccagaa cgtgctcgat
      241 ggatgtgtcg tcgtgactcg cgagcggcac acccagcgtt ttgcaacgcg caacgatctc
      301 gctgcgatga acccgcgcgt accgatgctg gtcgtcagtc agttcattga gcaccgtgct
      361 cgcgtgttcg tcggtccatt tgccgtgacg ctcctgatac ttgcgccact gcaccggatc
      421 gtgccattga cgctggccgg gcgtatggtc catcacggag acgaggcgca acagcggatg
      481 cgaaaccagc ccgtcgaata cctcaagcac gtccgctgcc gccacttcgc atcgcagatg
      541 caggaagtga tcgacgcgca gcatgccggt ctccgcgagc cgctcgatcg agcgcgcgca
      601 gttggtctgt atctccttgc ctcgtacgcc tacgccgcca cgcgagccga tgccgagtgc
      661 atcgaagacc gtagtgatgc ccgccgttgc cacctgggca tcgtgcacga ggatggctgc
      721 gtcgtgattc cacaatacgc ctggacgcgg cgcgatatgc ttttcgatgt tgtcggtatg
      781 cagctcgaca agtccaggca acagataatc cccgccccag tcctcggctt cagcaactga
      841 cgttgtgccg ggcgctactt cggtgatgca gccgtcggct actcgtacta cgcctgtgaa
      901 ctcttcatcg cgagtgacga tgcgcgcgtt tttgatcaac atgtctgcaa ggtttccgta
      961 atcgttgaag ccgttgccgc ctgtccggcg ggagcgttga gttggatcac gcgagtggca
     1021 acacgttcac gcgtgtcctc gtcatgaaaa ataccgacaa ttgccgcgcc ccgctcgcgt
     1081 gcttccacga tgagatccgc caccacctgc cggttctcgg catcgagcga cgccgtgggt
     1141 tcgtcgagca gcagcagcgg ctgttcagca atcagcccgc gcgcgatatt gatgcgttgt
     1201 tgttcaccgc cggagaacgt ggccggtgca agcgtccaca gacgccgcgc cacgttgagg
     1261 cgttcaagca gcgcaccggc gcgtacccgt gcttcctctt cgtccgtgcc tcgcgagatc
     1321 aagggttcgc tgacaagatc aagcgccgac acgcgcggaa tagcgcgcaa gaactggctt
     1381 acataaccca tggtagtgcg gcgcaagcga atcacatcgt gcggcagcgc atccgaaagc
     1441 gacaggtatt gcgatgatcg gctgtcatcg cggatagcaa ccgagccacg cgtgagcaga
     1501 tagttaccgt acatgcaacg cagcaacgtg ctcttgccgg cacccgaagg ccccgacaac
     1561 acaacacact cgcctcgttc tacatcgagc gacacaccgc tcagcgcagc aatgcgcacg
     1621 ccaccctgct gatgcagcgt aaaggtcttc tctactcctc gcgcgcgcag catcagcgcc
     1681 gcgcgttcgg caaacgcaag ctcattggaa agatcagcat tggcattcat tctcgtacct
     1741 caaactggca gcacggacgc aaccaacgtc tgtgtatagg gatgttgcgg gtcatcgagc
     1801 acttggtcgg tcagtccgct ctccaccact cgcccgtcct tcatcaccat cagacgatgc
     1861 gcaagcaaac gcgcaacacc aatatcatgc gtgacaatca gggcagcgag atgaagcttg
     1921 gcggtcagcg tgcgcagcag gtccagcagc cgcgcctgca ccgagacatc cagtcccgcg
     1981 gtgggctcgt ccatgaacac gaggcgtggc ttcgtcacaa gattgcgggc aatctgaagc
     2041 cgctgctgca tgccgcctga aaacgcggaa ggcagctcgt cgatacgcgt ggcgtccagt
     2101 tcgacctgat tcatccagtc cgaggctgtt tcgcgcaggc gtccgtagtg gcgcgccccg
     2161 ttcgccatta acggctcgcc gatattcgcc cctgcggaca cgccatgacg cagtccgtca
     2221 cgcgcattct ggtgcacaaa accccagtcg gtacgcgcga gcattctgcg gcgcggcatg
     2281 ggcagcgcga acagatcgag cagctcatgc tccacgctgc gatagtgcaa cgcgccatcg
     2341 ttcacgggcg ttcgcagagc cagcgcattc agcaacgtg
//
LOCUS       DATGBK010001485         1577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_132930, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001485 DATGBK010000000
VERSION     DATGBK010001485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132930"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..658)
                     /locus_tag="VKJ77_20695"
     CDS             complement(<1..658)
                     /locus_tag="VKJ77_20695"
                     /inference="COORDINATES: protein motif:HMM:TIGR01428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018784 - (S)-2-haloacid dehalogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006805 - xenobiotic metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase type II"
                     /protein_id="HMC47749.1"
                     /translation="MRPTAIVFDLYGTLLHIHALRERVRAAGISDADAFVEAWRNKQI
                     EFSWCCTLMGEYRDFDSLTKKALAYVLASFGHELKPAAAEALAAGWLELQPHDDVQPY
                     LEELRKRKIPLAVLTNGVKASAERALRAAGIRDAFDALLSVESVRVYKPHANVYKLAT
                     THFKCDPERLMFVSSNGWDASGASAFGFRVVYCNRAGKPAETLGYPPFATIGALAEIS
                     S"
     gene            complement(655..1140)
                     /locus_tag="VKJ77_20700"
     CDS             complement(655..1140)
                     /locus_tag="VKJ77_20700"
                     /inference="COORDINATES: protein motif:HMM:TIGR01668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008962 - phosphatidylglycerophosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HMC47750.1"
                     /translation="MFRPDHEALRITDVSLDALWDRGLRGIIVDLDNTVCAFGQSELA
                     PGVREWVLAAKARGFVLAMVSNNFSERVALISAHLDVPAVPNALKPLPGAFLRALRLL
                     GTPRSTTVVIGDQLFTDVLGAKLLGMHAVLTQPIVEKDFPLTRVLRLMERVFFARAPR
                     P"
BASE COUNT          321 a          481 c          455 g          320 t
ORIGIN      
        1 gcgagctaat ttcggctaac gctccgatag ttgcgaacgg cggatatccg agggtttcgg
       61 ccggcttccc tgcgcggtta cagtagacga cgcgaaagcc gaatgccgag gcgccgctgg
      121 cgtcccaacc gtttgagctc acgaacatga gccgttcggg atcgcatttg aagtgggttg
      181 ttgccagttt gtagacgttc gcgtgcggtt tgtagacacg cacgctttca acgctcagta
      241 aagcatcgaa cgcatcgcga atgccggcgg cgcgcaacgc acgctcggcc gatgccttca
      301 cgccgttcgt gagcaccgcg agcggtatct tacgtttgcg caattcctcg agatacggtt
      361 gtacgtcgtc gtggggctgc agttccagcc agcctgctgc taacgcttcc gccgctgccg
      421 gtttaagctc gtgtccgaat gaggcgagaa cgtacgcgag ggccttcttc gtgagtgaat
      481 cgaagtcgcg atattcaccc atcagcgtgc aacaccacga gaactctatc tgcttgttgc
      541 gccacgcttc aacgaacgca tcggcatcgc taatgcccgc ggcgcgcacg cgttcacgca
      601 gcgcgtggat gtgcagtagc gttccgtata aatcgaagac gatcgccgtc ggtctcatgg
      661 gcgtggcgct cgcgcgaaaa acacacgttc cattaggcgc agcacacgcg taagagggaa
      721 gtctttttcc acgatcggtt gggtgagtac ggcatgcatt ccgagcaatt ttgcccccag
      781 gacatcggtg aaaagttggt cgccgatcac aacggtcgtc gagcgcggcg tacccagcag
      841 ccgtagcgcg cgcaagaacg cgcccggcag cggtttgagt gcgttgggca cggccggcac
      901 atcgaggtgc gcgctaatca gtgcgacgcg ctcgctaaaa ttgttcgata ccatcgctaa
      961 aacgaagccc cgcgctttgg ccgcgagcac ccattcgcgt acgccgggcg caagctcgct
     1021 ctgcccaaag gcgcagacgg tgttatcgag gtcgacgatg atcccgcgca ggccgcggtc
     1081 ccaaagggcg tcgagcgata cgtcggtgat ccgaagcgcc tcatgatcgg gccgaaacat
     1141 cgttgggcct tttgcggggc gatttccacg ctttcctcgg tttcatgcac agctcgctca
     1201 cctcgctcgc aggccatcca ccggagggcg ccggctatgc accggaatgt cggctttcac
     1261 acaccccatc cccaaggttc gtaaccacga catcttgtat cccaagcctc ccagcggtac
     1321 aatatctagt acacctcgcg aatttgctat cgctacttgt atcgaacagg tgttcgattt
     1381 ccctcgtaaa atacactctt taatggaggt gccgatgtca accgaactgc ccagcggact
     1441 agccgaaccg agcttcgatc cgaacgcgat gcgcgtgctt aaagagcgtt atttcgcgcg
     1501 caacgatgac ggcacaaccg agacgccaaa agaattcctc tggcgcgtcg cttccgcgat
     1561 ttcgcagccg gaacggc
//
LOCUS       DATGBK010001486         1796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_17089, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001486 DATGBK010000000
VERSION     DATGBK010001486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17089"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..393)
                     /locus_tag="VKJ77_20705"
     CDS             complement(<1..393)
                     /locus_tag="VKJ77_20705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47751.1"
                     /translation="MRARTYRLWAFVALSALLAPLASSAAPAPLRIDEIFAPEPLLGR
                     LPAGINWAPDGSRFLYTLPGGTPAPLDTHVYDVRTNQDAIFFVAKAEGKGARPVAEIV
                     WSPDSKHIAYLNAGDLWTVGADGAGKKKL"
     gene            414..917
                     /locus_tag="VKJ77_20710"
     CDS             414..917
                     /locus_tag="VKJ77_20710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47752.1"
                     /translation="MNDDHEQNPIVAMAMKIRARRDLGAAIDSATHDAPQADARDADA
                     SFAALAEVLATGSKRLNSILGKNGVTFIRIEKPLRLRLRFRDKRIALDLDRERQLVII
                     TGEGLDGEYQFDTSAAVPSLINLSKLSTEAGYGEGLTGNAFLKVLAQDAELPRPAHLD
                     GAGPLQL"
     gene            complement(826..1584)
                     /gene="nth"
                     /locus_tag="VKJ77_20715"
     CDS             complement(826..1584)
                     /gene="nth"
                     /locus_tag="VKJ77_20715"
                     /inference="COORDINATES: protein motif:HMM:TIGR01083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HMC47753.1"
                     /translation="MSIPFPSRKVTRAVAHAELAILEQTYPAAVTALTYNSPFELLIA
                     VILSAQCTDARVNLTTPHLFANYPDPAALARAEQEDVERIVKSCGFFRMKAKNIISAA
                     RALVDEHAGQVPRERAQLEALPGVGRKTANVVMSVAFEQAAFAVDTHVFRVSHRLGLT
                     LGKTPRDVEDDVTRLVPPEQWRHAHHWLILHGRAICKAPTPLCGMCPVTMCPSRAIVA
                     RAFSAKAAAGPRRPSAPGAATRRPAPTPSKRRSR"
BASE COUNT          343 a          546 c          577 g          330 t
ORIGIN      
        1 gagcttcttc tttcccgcgc cgtccgcgcc aacggtccaa agatcgcccg cgttgaggta
       61 cgcgatgtgc ttgctgtccg gggaccaaac gatctcggca acgggccgag cgcctttgcc
      121 ttcggccttt gcgacaaaga aaatcgcgtc ctgattggtg cgcacatcgt acacgtgcgt
      181 atcgagcgga gcgggggtgc cgccgggcag ggtgtagaga aagcggctcc cgtccggcgc
      241 ccaattgatt cccgccggca gacgtcccag taacggttcg ggcgcaaaga tttcatcgat
      301 ccgcagcggt gcgggtgcgg cgcttgaagc aagcggcgcg agcagcgcgg atagtgcgac
      361 gaatgcccat aggcggtagg tgcgagctct caaacgaatc cccttagacg acgatgaacg
      421 acgaccacga acaaaatccg atcgttgcga tggcgatgaa aattcgcgcc cggcgcgacc
      481 ttggagcggc gatcgactcc gcaacgcacg acgcgccgca ggccgacgcg agggatgccg
      541 atgcgtcctt cgcagcgctt gccgaggtac tagccaccgg cagcaagcgc ctcaattcca
      601 tcctcggaaa aaacggcgtt accttcattc ggatagagaa gccgctgcgt ttgcggctgc
      661 gctttcgtga taaacgcatc gcgctggact tggaccgcga gcgccaactt gtgataatca
      721 ccggcgaagg cctcgacggc gagtaccagt ttgatacgag cgcggccgtg ccgtcgctca
      781 tcaacctctc aaaactgtca accgaggcgg gctacggcga gggcctcacc gggaacgcct
      841 ttttgaaggt gttggcgcag gacgccgagt tgccgcgccc ggcgcacttg gacggcgcgg
      901 gcccgctgca gctttagcgc taaacgcccg cgcgacgatt gcgcgcgagg ggcacatcgt
      961 caccgggcac atcccgcata gcggcgtcgg tgccttgcag atcgcacggc catgcaagat
     1021 cagccagtgg tgggcgtggc gccactgctc gggcggcacg aggcgcgtga catcgtcttc
     1081 cacatcacgt ggtgtcttgc caagcgtcaa tccaaggcga tgcgataccc gaaagacgtg
     1141 cgtgtccacg gcgaaagccg cttgttcgaa tgcgaccgac atcacgacat tcgcggtttt
     1201 ccgtcccacg ccgggtaacg cttcgagctg ggcacgttcg cgcggaactt gtccggcatg
     1261 ctcgtcgacg agcgcgcgtg cggcgctgat aatattcttg gctttcattc gaaaaaagcc
     1321 gcacgattta acgatgcgct cgacatcctc ttgctccgcc cgcgcaagcg cggccgggtc
     1381 gggatagttc gcgaacaggt gcggcgttgt gaggttgacg cgtgcgtcgg tgcactgggc
     1441 tgaaagaatg accgcgatca gcagctcgaa cgggctgtta taggtaagcg cggtgaccgc
     1501 ggccggatac gtctgttcga ggatcgcaag ttcggcgtgc gcgaccgctc gcgtcacttt
     1561 gcgcgatgga aatgggatgc tcatcgggat gagcgccttc gggtgtcgaa tgggcggccc
     1621 atgccgctct tcaaacaaaa agacgcatcg gtgccgccgg ggcaaaccgt cacgaccggt
     1681 tttccggtcc tccacgtcgg cgacgttccg gcgttcgatc caataacgtg gcgcttgcga
     1741 ctgcgcggaa tggtggccaa tccattcgag ttgacatttg acgaattgcg cgcctt
//
LOCUS       DATGBK010001487         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_132956, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001487 DATGBK010000000
VERSION     DATGBK010001487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132956"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..1386
                     /locus_tag="VKJ77_20720"
     CDS             169..1386
                     /locus_tag="VKJ77_20720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC47754.1"
                     /translation="MTDLFPLSARALDLRERVSRFQRETIEPAEADYLAYVEQDGQRW
                     AIPPVMENLKRLAQAAGLWNLFLPDRVHGAGLSNLDYAPLAEVMGRSLIAPEVYNCNA
                     PDTGNMEVLAQYGSEAQEARWLKPLLAGEIRSAFAMTEPDVASSDATNIDTRIVRDGD
                     DYVIDGRKWWTSGAMDPHCALFIVMGVTSPDAEPHRRHAMILVPRTAAGVSVLRPLHV
                     FGFDDAPHGHAEVLFERVRVSAENLILGEGRGFEIAQGRLGPGRIHHCMRLIGLAQRA
                     LEAMIERARTRVAFGKPLAAQGIVQNVIARSRCEIEQARLLTLAAAAALDRDGIKGAK
                     DAIGMIKIVAPRMACAVIDRAIQVHGGLGVCQDSFLAHAYAAARALRLADGPDEVHIA
                     ALAKSMLKPARHA"
     gene            1383..>2032
                     /locus_tag="VKJ77_20725"
     CDS             1383..>2032
                     /locus_tag="VKJ77_20725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011296148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HMC47755.1"
                     /translation="MNDALFLPEAALASYLETHIAGFSGPLNATKFKGGQSNPTYLLE
                     AASGKYVLRRKPPGKLLASAHAVDREYRVLGALQNTDVPIARPLYLCTDEAIIGSVFY
                     LMEYVPGRIFWDPALPELSPEARGAHYSAALAALVALAQIDVAAAGLSDYGKPGNYFS
                     RQVSRWTEQYRAAETERLEAMETLIGWLPGALPPDDRRVALVHGDFRIDNLIWDAN"
BASE COUNT          376 a          639 c          652 g          365 t
ORIGIN      
        1 gcgcgcagtg caattgaacc tggcgctgcg taataccgcc atcagcgaat tccgcggcgg
       61 tgacggtgac tggcagatgc atatctggaa tatgctgccg cacctgtccg cgccatccga
      121 acgcgagtgg gtaacgtact attgaagctg tctgcgagaa tcgctccgat gactgacctg
      181 ttccctctgt ccgcgcgtgc actcgacctg cgcgagcgcg tgagccgctt ccagcgcgag
      241 accatcgaac cggccgaggc cgattacctc gcctacgtcg aacaagacgg tcaacgctgg
      301 gcgatcccgc ctgtgatgga aaatctcaag aggctggcgc aagccgccgg tctgtggaac
      361 ttgttcctgc ccgatcgggt tcacggtgcg ggcttgagca acctcgacta cgcaccactg
      421 gcggaagtca tgggccgttc actgattgcg ccggaagtat acaattgcaa tgcgcccgac
      481 accggcaata tggaagtgct ggcgcagtac ggctcggaag cgcaggaggc gcgctggctg
      541 aaacctctgc tcgccggaga aatccgttcg gcgtttgcga tgacggagcc cgatgtcgcc
      601 agctccgacg cgaccaatat cgacacacgc atcgttcgcg acggcgacga ttacgtgatc
      661 gacggccgca agtggtggac gtccggcgcg atggatccgc actgtgcgct gttcattgtc
      721 atgggtgtga ccagtcccga cgcggagccg caccgacggc acgcgatgat tctggtacca
      781 cgcactgcgg caggtgtgag cgtgctgcga ccgctgcacg tatttggctt cgacgatgca
      841 ccgcacgggc acgccgaggt gctatttgag cgcgtgcgcg tgtctgcgga aaacctgatt
      901 ctcggcgaag gccgcggttt cgagatcgca cagggccggc tcggacccgg ccgcatccat
      961 cactgcatgc gcctgatcgg tctcgcgcaa cgtgcgctgg aagcaatgat cgaacgcgcg
     1021 cggacgcgcg tcgccttcgg caaaccgctc gcggcgcagg gcatcgtcca gaatgtgatc
     1081 gcgcggtcac gctgcgagat cgagcaggcg cgactgctca ccctggccgc ggccgcggcg
     1141 ctggatcgcg acggcatcaa gggcgcgaaa gacgcgatcg gcatgatcaa gatcgtcgcc
     1201 ccacgcatgg cctgcgcggt gatcgatcgt gcgatccagg tccacggggg cctgggcgtc
     1261 tgccaggaca gcttcctcgc ccatgcctat gcggcggcgc gcgcgctgcg tctggccgac
     1321 ggcccggatg aagtacacat tgccgcattg gcaaaatcca tgctcaagcc ggcgcgacac
     1381 gcgtgaacga tgcactattc ctgccggaag ccgcgctggc aagttatctg gaaacccaca
     1441 tcgcgggatt tagcggcccg ctgaatgcga caaagttcaa aggcggacaa tccaacccga
     1501 cttacctgct cgaagctgca tcgggcaagt acgtgctgcg gcgcaagccg cctggcaagc
     1561 tgctcgcatc ggcacacgcg gtcgatcgcg aataccgagt tttgggcgcg ctgcagaaca
     1621 ctgatgtgcc gattgcgcgg cccctgtacc tgtgcacgga cgaagccatc atcggcagcg
     1681 tgttctactt gatggagtat gtgcccgggc gcatcttctg ggatccggcg ttgccagagt
     1741 tgtcgccgga agcgcgcggc gcacattact ctgccgcgct tgctgcgctg gttgcgcttg
     1801 cgcagattga tgtcgctgcg gcaggcctca gcgactacgg caagcccggc aactattttt
     1861 cgcgccaggt ttcacgctgg accgaacaat accgcgccgc cgaaaccgag cgactcgaag
     1921 cgatggagac gctgattggc tggctgcccg gggccttgcc gccggatgat cgccgcgttg
     1981 ccctggtgca tggcgatttt cgcatcgaca acctgatctg ggacgccaac ga
//
LOCUS       DATGBK010001488         2569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_86672, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001488 DATGBK010000000
VERSION     DATGBK010001488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86672"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..551
                     /locus_tag="VKJ77_20730"
     CDS             <1..551
                     /locus_tag="VKJ77_20730"
                     /inference="COORDINATES: protein motif:HMM:NF044283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47756.1"
                     /translation="QKIPMAATIFRRLKDVGGGANLHNVMVLPGIFGVVVQMTQRYYG
                     EAKNLLLAALASEYHHPKLVIAVDADVDIFNHSELMWALTTRVNPEKDVVIIPGTHNH
                     GMDASLPELGAAGTPLWQRFGSKMLIDATIPPPADAEARAMFERIRPHNPQLKLEDFA
                     AAASLPVIRALPPRFFGSKLLR"
     gene            complement(689..1324)
                     /locus_tag="VKJ77_20735"
     CDS             complement(689..1324)
                     /locus_tag="VKJ77_20735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012081108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HMC47757.1"
                     /translation="MLENEERSESMSLPLVVAITGASGVIYGVEMLRVLKTLGQETHL
                     ILSEAAGLNLAIETDCELDHVKGLANVVYNNKDVGAAVASGSFRTRGMIVAPCSVKTL
                     SAIANSFTYNLIVRAADVTLKERRPLVLMVRETPLHKGHLDLMARAADCGAVILPPMP
                     AFYHKPESIMDIIHQSIGKALDQVGIEHSLFKRWAGHGSNEQGKESLRVAK"
     gene            complement(1357..2316)
                     /locus_tag="VKJ77_20740"
     CDS             complement(1357..2316)
                     /locus_tag="VKJ77_20740"
                     /inference="COORDINATES: protein motif:HMM:NF015366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HMC47758.1"
                     /translation="MKSLLLCAVALLVGAASAAQAQGYPKGPINLVIPYAPGDATDLA
                     GRTMAEGLSKLLKVPVLVINRSGAGGAMGTEYVAKAAKDGYTILFTTNATLTFRRVFD
                     PATAPYDPLRDFVSLGLATRVPNVLALRGDLPYKNLAGMVAFAKKNPGQVRIGTAGTG
                     TAGDFTVATVNALTGADLTMVPFKGASPAVTDVLGGHIEGVTVALGVVSSHMKSGALK
                     AIAISSRVPEFPDVPTLAEQGYGQNIFGLWLAFFAPAGVPAEVATVLVPAIEKVVKDP
                     GITARLLPRGLLQEYASPELLLNEMREEFKRIEELAKKSKIVK"
BASE COUNT          481 a          801 c          777 g          510 t
ORIGIN      
        1 tccaaaagat cccgatggcc gccacgattt ttcgccggct caaggacgtg ggcgggggag
       61 cgaatctgca caacgtgatg gtgctcccgg gaatcttcgg cgtggtggtg cagatgacgc
      121 agcgctacta cggcgaggcg aagaaccttc tgctcgcggc gctcgcttcc gaataccacc
      181 acccgaagct tgtcatcgcg gtggatgccg acgtcgacat cttcaaccac tcggagttga
      241 tgtgggcgct gacaacgcgg gtcaatccgg agaaagacgt cgtcatcatc ccgggcacac
      301 acaaccacgg tatggacgcg agtctgccgg agttgggcgc agcgggtacg cccctgtggc
      361 aacggttcgg atccaaaatg ctgatcgacg ccacgatccc gccgcccgcc gacgcggagg
      421 cacgcgcgat gttcgagcgc atccggccgc acaatccgca actaaagctg gaggatttcg
      481 ccgcggcagc ctctctgccc gtgattcgcg ccctcccgcc gcgcttcttc ggctcgaagc
      541 tcctgcgcta agtaaccgtc cggggaaacc ataaacactt tccgccccgc gcggcgcgcg
      601 aaggcggaca ggcttcctgc cgcttgtcgt cggcgcacag cctttgcata taaactggac
      661 gcaggagtgg gagatgcctg gtgccgactc atttggcgac gcgcagcgac tccttgcctt
      721 gctcgttgct gccgtgtccg gcccagcgtt tgaacagact gtgctcgatc ccaacctggt
      781 cgagcgcttt gccgatgctc tggtggatga tatccatgat cgattcgggc ttgtgataga
      841 aagccggcat cggcggcagg atcaccgcac cgcagtcggc tgcccgcgcc atgagatcga
      901 ggtggccctt gtgcaaaggc gtctcgcgca ccataagcac aagcggcctg cgctccttga
      961 gcgtcacgtc ggcagcccgc acgatcagat tataggtgaa tgaattggcg atggccgaca
     1021 gtgttttcac agagcacggc gcgacgatca tcccgcgtgt gcggaacgaa ccgctggcga
     1081 cggccgcgcc gacgtccttg ttgttgtaga ccacattcgc caggcctttg acgtggtcga
     1141 gttcgcaatc ggtctcgatg gcgaggttca ggccggcggc ttcactcagg atcaggtgcg
     1201 tttcctgtcc cagtgtcttc agtacacgca gcatttcgac gccgtagatc actcctgacg
     1261 cgccggtgat cgccaccact aatggcaggc tcattgattc gctcctctct tcgttttcca
     1321 gcatgtcctc ggcgtcggct tggtgaaagt ggcgccttat ttgacgatct tcgatttctt
     1381 cgcgagctct tcgatcctct tgaattcctc ccgcatttca ttgagcagca gctcggggga
     1441 cgcgtactcc tgcagcagtc cgcggggaag cagccgggcg gtaatgccgg ggtccttcac
     1501 tactttttca attgcgggca cgagcacggt cgccacttca gccggcacgc cggccggcgc
     1561 aaagaacgcg agccatagtc cgaatatgtt ctgaccgtag ccctgctcgg ccagcgtagg
     1621 cacgtccgga aactcgggca cccggctcga gatcgcaatt gccttcagcg cgccgctttt
     1681 catgtggctg ctgacgacgc ccaatgcgac cgtgacgccc tcgatgtgcc cgccaagaac
     1741 gtcagtcaca gccggggaag cgcctttgaa gggcaccatg gtaaggtctg cgccagtgag
     1801 cgcgttcacg gtcgcgacgg tgaaatcgcc ggcggtgccc gtgccggcag tgccaatgcg
     1861 cacctgaccc ggatttttct ttgcaaacgc caccatcccg gcgaggtttt tgtagggcag
     1921 gtcgccgcgc aacgcgagaa cgttgggaac tcgcgtggcg agtcccagcg aaacgaaatc
     1981 gcgcagggga tcgtagggcg cagtcgcggg gtcgaagacg cgcctgaagg tcagtgtcgc
     2041 attggtcgta aatagaatcg tgtagccatc cttggcggcc ttcgccacgt actcggtacc
     2101 catggctccg cccgcacccg accggttgat caccaggacg ggtaccttca gcagcttcga
     2161 cagtccctcg gccatcgtac gtcccgcaag atccgtggca tcgccgggcg cgtaaggaat
     2221 caccagattg atcggccctt tgggatagcc ttgtgcctgg gcagcggatg ccgccccgac
     2281 gagcagcgcg acggcgcaca gtagcaggct cttcatcatg atctccgccg ctcggttatg
     2341 cgcgagcgat gctcattatc ttgtatcggc ggattatgta caatagaatg aaattcgaaa
     2401 agggtcgatt cagattgcgg caataacgcg gccacgcagg aagactgttg gtctttttcc
     2461 cacaatgtaa tgtccccctt cacaggagcg caaccatgac atcagcctct cgttcaggcc
     2521 agcagcccag ggacatgcgg tcgtggatcg ccgagctgga ggccgccgg
//
LOCUS       DATGBK010001489         2104 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_17124, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001489 DATGBK010000000
VERSION     DATGBK010001489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17124"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..1635)
                     /locus_tag="VKJ77_20745"
     CDS             complement(34..1635)
                     /locus_tag="VKJ77_20745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004198666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HMC47759.1"
                     /translation="MANSNSADVVVVGSGVAGGLVAHQLATAGASVILLEAGPRIPRW
                     QIVENFRNSPAKSDFATPYPSTPYAPHPEYSPENNYLIQKGEYPYASQYLRLVGGTTW
                     HWAAAAWRLLPADFKLKTLYGVGRDWPIPYETLEPWYFAAEVELGVSGPGNNVDLGSP
                     RSKPYPMDMLPLSYMDQRFADVLNAQSFHVVPEPVARNSRPYDARPTCCGNNNCMPIC
                     PIAAMYNGITHAEKAERAGAKLIAQAVVYKIESDDKGLITAVHYKDPNGNSTRVTGKL
                     FVLAANGIETPKLMLQSVSDRFKSGIGNSSDQVGRNLMDHPGTGVSFLANEPVWPGRG
                     PMEMTSVVNFRDGAFRSEYSAKKLHLSNGVPTMSVTADLIAKGVTGAELDRQIRDRAA
                     RTMSINSFHEHLAEPQNRVIPSSDHKDSLGIPQPEIYYSINDYVKKSAADTRAQYARI
                     AELFGGTEISFDDKFAPNNHIMGTTIMGADPKDSVVDSECRTHDHPNLFIAGSAVMPT
                     AASVNCTLTLSALSLRLADKLKKEL"
     gene            complement(1727..>2104)
                     /locus_tag="VKJ77_20750"
     CDS             complement(1727..>2104)
                     /locus_tag="VKJ77_20750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar dehydrogenase complex small subunit"
                     /protein_id="HMC47760.1"
                     /translation="LLSRKLTGRAAFDPALAQRVYDALSKSDSEFAGNVGALNVWLAA
                     HGGVPSDTVTQALKADTPKLAGTVTAIMRAWYLGLVGDAPRVSVVAYERALMFDPVND
                     VLTIPSYCRDVPFYWTQKPPGAA"
BASE COUNT          392 a          631 c          653 g          428 t
ORIGIN      
        1 ggttcttcat cgtggatctc cgtcggcgcg caatcaaagt tctttcttca gcttgtcggc
       61 gagacgcagc gacaacgcgg acaacgtcag cgtgcaattc accgatgccg ccgtcggcat
      121 caccgcactg ccggcaatga agaggttcgg gtggtcgtgc gtgcggcatt cggaatccac
      181 gacggaatcc ttagggtccg cgcccatgat ggtcgtcccc atgatgtggt tgtttggcgc
      241 gaatttatcg tcgaagctaa tctccgtgcc gccgaacaat tccgcgatcc gcgcatactg
      301 cgcgcgtgtg tcggccgcgc ttttcttcac gtagtcgttg atcgagtaat agatctcagg
      361 ctgcggaatg ccgagcgaat ccttgtgatc cgacgatgga atcacacggt tctgcggctc
      421 ggccagatgc tcgtggaaac tgttgatgct catcgtgcgc gcggcgcgat cgcggatctg
      481 ccggtcgagt tccgccccgg tcacgccctt ggcgatcagg tccgccgtga ccgacatggt
      541 gggtacgcca ttcgacaaat gcagcttctt cgccgagtat tcagagcgga aagcgccgtc
      601 acggaaattc acgacggagg tcatctccat cggcccgcgt ccgggccaca cgggttcgtt
      661 ggcgaggaag ctcacgccgg tgccggggtg atccatcagg ttgcggccga cctgatccga
      721 actgttgcca atgccgctct tgaacctgtc agacaccgac tgcaacatca gcttcggcgt
      781 ttcaattcca ttagccgcga gcacgaagag cttgcccgtg acacgcgtgc tgttgccatt
      841 cgggtccttg taatggacgg cggtgatcag gcctttatcg tcgctttcga tcttgtagac
      901 gaccgcttgc gcaatcagct tcgcaccggc acgctcggct ttctccgcgt gcgtgatgcc
      961 gttgtacatg gcggcgatcg ggcagatcgg catgcagttg ttattgccgc agcaagtcgg
     1021 gcgcgcatcg taagggcggc tgttacgcgc gaccggttcc ggcaccacgt gaaaagactg
     1081 cgcgttgagg acatcggcga aacgctggtc catgtaggac agcggcagca tgtccatcgg
     1141 gtacggtttg gagcgcggcg aaccaagatc gacgttgttg cccggacccg atacaccaag
     1201 ctctacttca gcggcgaagt accaaggctc gagggtctca taagggatcg gccagtcgcg
     1261 acctacgcca tagagcgtct tcagtttgaa atcggcaggt agcaagcgcc atgcagccgc
     1321 tgcccagtgc caggtcgtcc cgcccacgag ccgcaagtat tgcgacgcgt agggatactc
     1381 gcccttctgg atcagatagt tgttctcggg tgaatactcg ggatgcggcg cgtaaggtgt
     1441 cgacggatac ggtgtggcga aatcggactt cgccggcgag ttacgaaagt tctcgacgat
     1501 ctgccagcgc ggaatacgcg gcccggcttc gagcaggatc acggaggcgc ccgcggtcgc
     1561 gagctgatgc gcgacgagtc cgcccgcaac ccccgatccg acgaccacca catcggccga
     1621 attcgaattt gccatttgtt gttgtcctgt gagggtaggt ttttatttgc ttcggtcgcg
     1681 ctgtcgagca gcgcgccggc ttgatgctgt tcttgatgcg ttgggttcaa gccgcgccag
     1741 gtggcttctg cgtccagtag aacggcacgt cgcggcaata cgacgggatg gtcagcacgt
     1801 cattgacggg atcgaacatc agtgcgcgct cgtaggcgac cacgctcacg cgcggagcat
     1861 cgccgacaag accgagatac cacgcccgca tgattgcggt gaccgtgccg gcgagcttgg
     1921 gcgtatccgc cttgagcgcc tgcgtcaccg tatccgacgg cacgccgcca tgcgccgcga
     1981 gccaaacatt cagggcgccc acgttgccgg caaactcgct atccgacttc gacagcgcgt
     2041 catacacacg ttgcgccagc gcaggatcga aagcagcgcg gccagtcagt ttgcgcgaga
     2101 gcag
//
LOCUS       DATGBK010001490         3169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_226136, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001490 DATGBK010000000
VERSION     DATGBK010001490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3169
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226136"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VKJ77_20755"
     CDS             <1..255
                     /locus_tag="VKJ77_20755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47761.1"
                     /translation="DDNHAEILENRGSELPKHAIIAAKRSLNKHLRRLIKMERGLRHV
                     IRPAIARPEAAQSGFFKTSWSGRGVSFWGDRIELAHDFHR"
     gene            386..1465
                     /locus_tag="VKJ77_20760"
     CDS             386..1465
                     /locus_tag="VKJ77_20760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HMC47762.1"
                     /translation="MVAAGAFIASGAHAALPVDEIKLPAGFSIAVLSDDLPSARAMAL
                     SPKGVLYAGSLDGHVYALELKDGRVTAKHVIASGLDEPAGVAFHNGALYVSAISRILR
                     FDDIDDHLEAPPKPVLVTDKLPSDRHHGWKFIAFGPDGKLYVPTGAPCNVCNPDRKRY
                     ALIASMNPDGTDYEVFANGVRNTVGFDWDPRTKELWFTDNGRDMLGDDIPDDKLNHAP
                     KGGMDFGFPYCHGGDVADPEFGAGHPCSGFTPPVVKLGAHVASLGMRFYTGTMFPADY
                     KNNIFIAEHGSWNRSTKVGYRVVRIVVGANGEKPRMEPFAQGWLRPKEQVWGRPADVL
                     PMPDGSLLVSDDYAGAIYRITYAQP"
     gene            1638..2132
                     /locus_tag="VKJ77_20765"
     CDS             1638..2132
                     /locus_tag="VKJ77_20765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NINE protein"
                     /protein_id="HMC47763.1"
                     /translation="MTNSPSTATHPSKPTSNGRFRSKTLTAALAFFFGSIGAHRFYLY
                     GLRDKFGWAHIVGILLGVAGYMLLAATDRASLLGWVLVVPGAISLLAAFLSAIVYGLR
                     PDEKWDAQFNAQTGQHSESGWTVIFVVIFSLLFGAFLLMAGLAVTFQTYFEGQVQAAK
                     ELSQ"
     gene            complement(2193..>3169)
                     /locus_tag="VKJ77_20770"
     CDS             complement(2193..>3169)
                     /locus_tag="VKJ77_20770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PA0069 family radical SAM protein"
                     /protein_id="HMC47764.1"
                     /translation="TQVFEERAKSILTRNSSPDIPFGVSLNPYRGCEHGCIYCFARPT
                     HSYLGLSPGLDFESRIYAKINAGELLERELDKPSYQPEPIALGVITDAYQPVERNLRI
                     TRRVIEILSERGHPFAAITKSSLIERDIDLLAPMAQKGQVMAAITITTLDADIARTLE
                     PRAATPSRRLRTIRTLTEAGIPVGVSVAPMIPFVTEPDMERVLEACAEAGATSASYIV
                     LRLPWEVAPLFRDWLAAHFPDRAERVMGRVRDMRGGKDYDSDFSKRMKGEGLWADMLK
                     QRFHNATKRLGLNQRRRGILDMSEFRHVEKAVGRHPRAVVDSAQMKLF"
BASE COUNT          607 a          989 c          909 g          664 t
ORIGIN      
        1 gatgataacc atgctgaaat ccttgaaaac cggggttcgg aactaccaaa acacgcgatt
       61 atagcggcaa aacggagcct taacaaacac ttgcgtcgat taatcaagat ggaacgtggc
      121 ctgcggcatg tcattcgacc ggccatcgcc cgccctgagg cggcgcaaag cgggtttttc
      181 aagacttcgt ggagcgggcg cggagtgtca ttttggggag acagaattga actcgctcat
      241 gactttcacc ggtaaaggtt tctctgaaga cgattcgcgg aggcctagcg gtgtcgccct
      301 ccgtgtcgtc cgctgtgtca tccgatctct ggtgcattcg gcctgttccg cctttttagc
      361 ggcgaatgtg ctgacgaatg tactaatggt cgcggctggc gcgttcatcg caagcggcgc
      421 ccatgcggcg ctgccggttg acgaaatcaa gctgccggcg ggcttcagca tcgctgttct
      481 ctccgacgac ctcccgagcg cccgcgccat ggctttgtcg cctaaaggcg tgctttacgc
      541 cggcagcctc gacgggcacg tctacgcgct cgagttgaag gacggacgcg tgacggcaaa
      601 acacgtaatc gcgtcaggtc tggacgagcc tgcgggcgtg gcgttccaca acggagcgct
      661 gtatgtctcg gcgatctccc ggatcctgcg gttcgacgac atagacgatc acctcgaggc
      721 gccccccaag cctgtattgg tcactgacaa actaccttcc gaccggcatc acggctggaa
      781 attcattgcg ttcggcccgg acggcaagct gtatgtgccg accggcgcgc cgtgcaatgt
      841 ctgcaatccg gatcgcaaac ggtacgcgct catcgccagc atgaacccgg acggcaccga
      901 ctacgaagtg tttgcgaacg gcgtacgcaa cacggtgggc ttcgactggg atccgcggac
      961 gaaagaactc tggttcaccg acaacggccg cgacatgctc ggtgacgata tccccgacga
     1021 caaactcaat catgcgccga agggcggcat ggacttcggt ttcccttact gccacggcgg
     1081 cgacgttgca gaccccgaat tcggtgccgg ccatccgtgc tccgggttca caccgcccgt
     1141 ggtcaagctg ggcgcacacg tggcgtcgct cggcatgcgc ttctatacag gcacgatgtt
     1201 cccggccgac tataagaaca acatattcat cgcggaacat gggtcttgga accgcagcac
     1261 gaaggtgggg tatcgcgtag taaggatcgt ggtgggggcg aatggcgaga aaccgcgcat
     1321 ggagccgttc gcccaaggct ggctccgtcc aaaagagcaa gtgtggggtc gtcccgccga
     1381 tgtcctgcca atgcccgacg gctcgcttct cgtcagcgac gactacgcgg gtgcaatcta
     1441 ccggattacg tacgcgcaac cttgacgttg ctgtgatctt gcagtgacat tgccgcgacc
     1501 cggtcgccgc gcgctgagcc gttcagccgc gtgagcgccc aaccctgcgg gcgtagaatg
     1561 ccgcgtcggc ggcgaaagtg ttgccgtttg cgccaatccg cctccattgc tcactgcatt
     1621 ttccttttcg tttcccgatg accaactcgc cgtccactgc aacgcaccca tccaaaccaa
     1681 cgtcaaacgg gcgtttccgc tcgaaaacgc tgaccgctgc gctcgccttc tttttcggca
     1741 gtatcggcgc gcatcgcttt tatctgtacg gtttgcgtga caagttcggc tgggcgcaca
     1801 ttgtcggtat cttgctgggc gtggccggtt acatgctgct cgcggcaacg gatcgggctt
     1861 cacttctcgg ctgggtcctg gtcgtgcctg gcgccatttc gctgctggcg gctttcttgt
     1921 cggcgatcgt ctacggcttg cgccccgacg aaaaatggga cgctcagttc aatgcgcaaa
     1981 ccggccaaca tagcgaatcc ggctggacag tcattttcgt cgtgatcttt tctttgttgt
     2041 ttggcgcgtt cctgctgatg gcaggtcttg ccgtcacctt ccagacttac ttcgaaggcc
     2101 aggttcaagc agccaaagag ttgtcgcaat aagtgccgca gtaacgcgca agggccgtag
     2161 cgactccgcc cgacagtcgc tacggccacg catcaaaaca atttcatctg cgcactgtcc
     2221 acgactgcac gcggatgtcg acccaccgcc ttctcaacat gccgaaattc cgacatatcc
     2281 agaattccgc gccgccgttg attcaggccg agccgcttcg tggcgttatg aaagcgctgc
     2341 ttgagcatgt cggcccataa accttcgcct ttcatccgct tcgagaaatc cgagtcgtag
     2401 tccttgccgc cgcgcatatc gcgcacacgc cccatcacac gctccgcccg atccgggaaa
     2461 tgtgctgcga gccagtccct gaacagcggc gccacctccc acggcaagcg caaaacgatg
     2521 taactcgcac ttgtcgcacc cgcttctgcg caggcttcca gcactcgttc catgtccggt
     2581 tccgtgacga aaggaatcat gggagcgacg ctgaccccga ccggaatgcc cgcctcggtc
     2641 agcgtccgga tagtgcgcag ccttcttgaa ggcgtggctg cgcgcggttc gagcgtgcgg
     2701 gctatgtccg catccagcgt agttatggtg atggcggcca tgacctgacc tttctgcgcc
     2761 atgggtgcga gcaggtcgat atcccgctcg atcagtgacg acttcgtgat tgccgcgaac
     2821 ggatgccccc gctcgctcag gatctcgatc acccgcctcg tgattcgcaa attccgttcg
     2881 acgggctgat acgcgtcagt aatcacgccc agcgcgattg gctccggctg ataggacggt
     2941 ttatccaatt cccgttcgag cagttcgccg gcgttgatct tggcgtagat ccggctttcg
     3001 aaatccagtc ccggcgacag ccccaaataa ctatgcgtag gccgcgcgaa gcaatagata
     3061 caaccgtgct cgcaaccacg gtacgggtta agcgataccc cgaacggaat atccggcgat
     3121 gaattgcgcg tcaggatgct cttcgcgcgt tcctcgaata cctgcgtgc
//
LOCUS       DATGBK010001491         2359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_110162, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001491 DATGBK010000000
VERSION     DATGBK010001491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110162"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1108)
                     /locus_tag="VKJ77_20775"
     CDS             complement(<1..1108)
                     /locus_tag="VKJ77_20775"
                     /inference="COORDINATES: protein motif:HMM:NF015413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HMC47765.1"
                     /translation="MAFRDGFLSELVGRPAVVEIDGKRTTIGTVADFVVEHPEDTFPR
                     VDAVVLKMRGGDKLAPIGDVLDIQSEDRALVLAVMPHIACPHEDEALYLVEDLLDKQI
                     VDVDGRKVVRINDLELAQTAGALRVVAADIGAGGLLRRLGAGGIFPGLIAKVPRTLIA
                     WDNVAPLHDLSPSEIKLSVSDNRLARLHPSDLAEIISDLSAQDAARVVGSLDDETAAD
                     AFEHLDAETQKSIIEDLGAERAADIIEEMDSDDAADLLGELPEEQQIELLAKMDAETA
                     DDLRELSQYAEDTAGGLMTTDYFWIYPHRTAEATITKIRELAPETEFIYYLYVTDRSE
                     KLLGVLSLRTLLLADPETTIDSVMDTDIVSVAPDA"
     gene            1366..1725
                     /locus_tag="VKJ77_20780"
     CDS             1366..1725
                     /locus_tag="VKJ77_20780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47766.1"
                     /translation="MIAQIGQPGAPALDAAQQAEVKKAVTGAPPDALKRIRYALAPDE
                     TGKVRLVVYDGQGLPADGKRPGKKFDYIVFHLLNVADGSTYDPQQNAIQAPVPPAKER
                     GEAATDTAPITTTTTEK"
     gene            complement(1733..>2359)
                     /locus_tag="VKJ77_20785"
     CDS             complement(1733..>2359)
                     /locus_tag="VKJ77_20785"
                     /inference="COORDINATES: protein motif:HMM:NF012903.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HMC47767.1"
                     /translation="NGPLGVTAGTNYPTIVGSPPTVGNPALSIATQGGIGTQVIGFNI
                     GTLNASDVGQQAVVIVLPAETKAPGQAAEVNSGDGEGTTVSIDIPAVNTINLAINGLA
                     VGNSDTNMVSEYEVDYAIQGLANIRAQVGAQTVSLQETANNAAIDSVNTQASESLIRD
                     TDIGKETTAFTKDQILVNLQTAVLSKLFGQAPQVLALVQGSRVGSSGI"
BASE COUNT          444 a          699 c          725 g          491 t
ORIGIN      
        1 ttgcgtcggg ggcgacgctg acgatgtcgg tgtccatcac gctgtcgatt gtggtttcgg
       61 ggtcggcgag cagcagcgtg cgtagcgata ggacgccgag taatttctcg ctgcggtccg
      121 ttacgtataa ataataaatg aattcggttt ctggggcgag ttcgcgaatt tttgtgatcg
      181 tggcttcggc cgtgcggtgc gggtagatcc agaagtagtc ggtcgtcatt aggccgccgg
      241 cggtgtcttc ggcgtactgt gaaagctcgc gcagatcgtc ggcggtttcc gcgtccatct
      301 tcgcgagcag ttcgatctgc tgttcttcgg ggagttcgcc gagcaaatcg gcggcatcgt
      361 ccgaatccat ctcttcgatg atgtcggcgg cgcgctcggc gccgagatct tcgatgatcg
      421 acttttgcgt ttccgcatcc agatgttcga atgcatcggc ggcggtttcg tcgtcgagcg
      481 agccgacgac gcgggccgcg tcctgggccg agagatcgct gatgatttcg gcaagatcgg
      541 acggatgcag ccgcgcgagg cgattgtcgc tgacggagag tttgatttcg ctggggctca
      601 aatcgtgcag cggcgcgacg ttatcccacg cgatcaacgt acgcggtact ttggcgatca
      661 ggcccgggaa gattccgccc gcgcctaagc ggcgcagcag tccgcccgcg ccgatgtcgg
      721 cggcaacaac gcgtagcgcg cccgcggttt gtgcgagctc gaggtcgttg atccgcacga
      781 ccttacggcc gtcgacatcc acgatttgtt tgtcgagcag gtcctcgacg aggtacagcg
      841 cctcgtcctc gtgcgggcac gcgatatgcg gcatcacggc caggaccagc gcgcggtctt
      901 ccgattggat gtcgagcacg tcgccgatcg gagccagctt atcgccgccg cgcatcttga
      961 gaacgacggc atcgacgcgt gggaacgtat cctcggggtg ttccacgaca aagtcggcga
     1021 ccgtgccgat cgtggtacgt ttgccgtcga tttcgacgac cgcgggccgg ccgacgagct
     1081 cggaaagaaa tccgtcacga aacgccattg gcttgcaccc cctttctcgc gcacacgaaa
     1141 atgccggaag cagctgctgc tccggcgttt catcaccatc agtataccgg cccgcggaaa
     1201 cacgggtcaa ccgcagaaag ggctcgcgcc gaaaatgccg atgcttaaag ggtgacgtct
     1261 ttgttcttac gcgcagcggc gctcctctcg gtcacggcac tcgcggcggg ctgcgcgaaa
     1321 cctggtgcac caccggcctc ggcccccaac gttccgcaac gtgccttgat cgcccaaatc
     1381 ggtcagcccg gcgccccggc tctcgacgcg gcgcagcagg ctgaagtgaa gaaggccgtc
     1441 acgggagcac caccggacgc cttgaagcgc atccgatacg cactcgctcc ggacgagacg
     1501 ggcaaagtac ggctcgtcgt atacgacggg cagggtctgc ctgccgacgg gaagcggccg
     1561 ggcaagaagt tcgactacat cgtcttccat ctactcaacg tggcggacgg ttcaacatac
     1621 gacccgcaac agaacgcgat tcaagccccg gttccgccgg ccaaagaacg cggcgaagcg
     1681 gcgacggaca cggcccctat tacgacgacg acgaccgaaa agtaaaagag ttctagatcc
     1741 cgctagagcc gacgcgcgag ccttggacga gtgcgagcac ttgcggcgct tgaccgaaca
     1801 gtttcgataa caccgcagtt tgcaaattga ccaaaatttg atcttttgta aacgcggtcg
     1861 tttcttttcc gatatccgta tcgcgaatca aactttccga tgcttgcgtg ttaacggaat
     1921 cgatcgcggc attattcgcc gtttcttgaa gcgacacggt ttgtgcgccg acttgcgcgc
     1981 gaatatttgc aagaccctga atcgcgtagt caacttcgta ttccgaaacc atattcgtat
     2041 cggagttacc cactgccagg ccattaatcg cgaggttaat cgtgttgacc gccgggatat
     2101 cgatgctgac cgtggtgcct tcgccatcgc ccgagtttac ttccgcggct tggcccggcg
     2161 cttttgtttc ggcgggcaac acgatgacga ccgcctgctg accgacatca cttgcgttta
     2221 gcgtcccgat gttgaagcca atgacttgcg tgccaattcc gccttgggtt gcgatactga
     2281 gtgccggatt gccgacggtc ggtggagagc cgacgatcgt tgggtaattc gttccggcgg
     2341 taacgccgag cggtccgtt
//
LOCUS       DATGBK010001492         2623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_226141, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001492 DATGBK010000000
VERSION     DATGBK010001492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226141"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(198..434)
                     /locus_tag="VKJ77_20790"
     CDS             complement(198..434)
                     /locus_tag="VKJ77_20790"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HMC47768.1"
                     /translation="MPSLPDDLREDAYQAVAIARFDIHADGTIEVELSMPTQNPRLNA
                     LLLETLSRWRFFPAMQGGHPVESHQDVRVHFNVS"
     gene            complement(916..1314)
                     /locus_tag="VKJ77_20795"
     CDS             complement(916..1314)
                     /locus_tag="VKJ77_20795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HMC47769.1"
                     /translation="MKFQRSRASKRGRIEIIPMIDVMFFLLATFMLASLAMQRLDAVK
                     VDLPSGQAQQMSEDQPLTMTVDRTNAIFLDRQPVRLDQVEAGVRRLLKPDRNVVIAAD
                     DAAAQGAVVQAMLAARRAGAEHFLMAIHRE"
     gene            complement(1311..1916)
                     /locus_tag="VKJ77_20800"
     CDS             complement(1311..1916)
                     /locus_tag="VKJ77_20800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HMC47770.1"
                     /translation="MQDWAGITAAAQVGGWVVYPLTLLAVLAIAIAIDRAYVFVRFAS
                     QPGAGTHTLPAQHAFSRLDATVTAPAGTPLWLVEARAQSVATRIERDMSRGFWVLETI
                     VTAAPLLGLLGTIVGMMRSFQLFGGNGLVNAGGVTGGVAQSLVATAIGLVVALFALFA
                     FNYFSRRLERLIDDLEVHANERLSEIRLQAESAGAIAGGTQ"
     gene            complement(1950..>2623)
                     /locus_tag="VKJ77_20805"
     CDS             complement(1950..>2623)
                     /locus_tag="VKJ77_20805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HMC47771.1"
                     /translation="SSQNDPVQPERSHYFDLGITQRLSSTITVGVDAYYKKSTNLLDE
                     GQFGTALIFTPFNYKYGRVYGVEFTSNYKQGDVSAYMNVAFSRAQGKDIDSAQFNFDA
                     SELAYISNHWVYLDHDQRVTASFGGAYQLGKTTFTFDGIVGSGLRSGFANTDHLPFYT
                     QVNLGVIHHFNFNEPLIGKFDARLLLINAFNRVYELRDGSGIGVGAPQYGPHIAMYAG
                     ITKNF"
BASE COUNT          547 a          767 c          786 g          523 t
ORIGIN      
        1 ggtcggagcg atctacgatc tcgcctcggg gaaggtccgg gtggttgatt gaagcaatcg
       61 cccgggttgg catgagataa ggcatggtcg tcaacctctg gagcgtaatg ggccgcctac
      121 caatccagag tgccgccgct aagataaaag gcaatgaacg accgttgcct ctgctgctcg
      181 tgctaaaggc aaacggttta actcacattg aaatgcacac gcacgtcctg atgactctcc
      241 acgggatgtc cgccttgcat cgccgggaaa aaacgccatc tgctcagcgt ttcaagcagt
      301 aacgcgttta ggcgagggtt ctgcgtcggc atcgaaagtt ctacttcaat cgttccatca
      361 gcgtggatat cgaagcgcgc gatggcgacc gcctgatagg cgtcttcgcg aagatcgtcg
      421 gggagagaag gcatgggttg actgatgacg cgtgcggcag aacctgctga cggggtcgcc
      481 gtattgcttg acgatgcaga agatgacgac gttgtcacag ccgcagtatg tgtcgctgag
      541 gggcttgcct ccggcgacgc tggcagtgcc ggctggtccg tttttgcaat cacgcgttcc
      601 ggggacggat gctgattttc gtgcggtttc gccacgcggg ccggcattag atctcgtcgc
      661 gtgagcactt gcggcgtgag cgccgcagcg ggcgccgaag gggcgacagc acgggtattt
      721 gcggggggcg cggccaattc cacaagacgc atttccatag tcgtttgcac cggaacggcg
      781 tcgctcggca gaggctgcaa gagcgggttc acgaactggg tcagcagaac ggcccaaagc
      841 acaaacgcaa tgagaagggc cacgctaaat ctcattcggg gcgtgcccat caaacctgcc
      901 cgtctacccg acccgctact cacgatgtat tgccatcagg aaatgctccg cgcccgcgcg
      961 gcgcgcggcc aacattgcct gaaccacggc tccctgtgcc gcagcgtcgt ccgcggcgat
     1021 gaccacgttc cggtccggct tgagaagccg cctgacgccg gcttcaacct gatcgagacg
     1081 cacgggctga cggtccagga agatcgcgtt cgtgcgatcg accgtcattg tcaacggttg
     1141 atcttcggac atctgctgcg cctgtcccga tggcaaatcg accttgacgg catccagccg
     1201 ttgcatagcc agcgatgcca gcatgaaggt ggcgagcaga aagaacatca cgtcgatcat
     1261 cggaatgatc tcgatgcgcc cacgcttgga cgcccgcgag cgctggaact tcattgcgtg
     1321 cctccggcta tcgctccggc gctttcggcc tggagccgaa tctcgctgag gcgctcgttg
     1381 gcgtgcactt cgaggtcatc gatcaagcgt tcaaggcgtc gcgagaaata attgaacgca
     1441 aaaagcgcga acaacgcgac gaccaatccg atagccgtgg ccaccagcga ttgcgccacg
     1501 ccaccggtaa caccgccagc attaaccagg ccgttgccgc cgaatagctg gaacgaacgc
     1561 atcattccga caatggtccc cagcaacccg agcaagggcg cggccgtcac gatagtctcc
     1621 aacacccaga agccgcggct catgtcccgt tcgatacgcg ttgcgaccga ttgagcacgg
     1681 gcttcgacta gccataatgg tgttccagct ggcgctgtca ccgttgcatc gaggcggctg
     1741 aacgcatgct gtgccggcag cgtatgggtg ccagctccag gttggcttgc aaatcgcacg
     1801 aacacatacg cgcgatcgat tgctatagcg atcgccagca cggcgagcag cgtgagcggg
     1861 tacaccaccc agccgcccac ctgtgccgcg gcagtaatac ctgcccaatc ctgcatgatg
     1921 aaaacctttt cgttaagtta tccgattgat tagaaattct tcgtgatgcc tgcgtacatc
     1981 gcaatgtgcg ggccatactg cggtgctcct acgccaatgc ccgatccgtc gcgcaactcg
     2041 tagacgcggt tgaacgcgtt gatgagcagc aggcgcgcgt cgaacttgcc gatgagcggt
     2101 tcgttgaagt tgaagtgatg gatcacaccc agattcacct gcgtgtagaa aggcaggtgg
     2161 tccgtgttcg cgaagccact gcgcagcccg ctccccacaa tgccgtcgaa ggtgaaggtg
     2221 gtcttgccca actggtacgc gccgccgaac gaagcggtca cccgctggtc gtgatcgagg
     2281 tatacccagt gattgctgat gtaagcgagt tcgctggcat cgaaattaaa ctgcgctgaa
     2341 tcgatgtcct tgccctgcgc gcggctgaac gcgacgttca tgtaggccga aacatcgccc
     2401 tgtttatagt tgctggtaaa ttcgacaccg tagacacggc catatttata gttgaacggc
     2461 gtgaaaatca gcgcggtgcc gaactggccc tcgtcgagca agttcgtcga tttcttgtag
     2521 tacgcgtcga cgccgaccgt gatggtcgag ctcagtcgtt gcgtgatgcc cagatcgaaa
     2581 taatggctgc gttctggctg caccggatcg ttctggctcg atg
//
LOCUS       DATGBK010001493         2721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_133014, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001493 DATGBK010000000
VERSION     DATGBK010001493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2721
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133014"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            312..1559
                     /locus_tag="VKJ77_20810"
     CDS             312..1559
                     /locus_tag="VKJ77_20810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47772.1"
                     /translation="MFSWYRQVSKGERYTFWACFGGWALDALDVQMFSLVIPAIIAEW
                     GISKTQAGLVSGVTLVASALGGWICGAAADRYGRVKTLQVTVVFFSVFTLLSAFAQNY
                     PQFIVLKALQGFGFGGEWAAGAVLMAETIRNEHRGKAMGAVQSAWAVGWAAAVLLYAT
                     VFSFMSPDIGWRVMFGIGIVPALLIIYIRRNVKEPVAPTRKEAGLKDGKERTPLLSIF
                     APDVIRMTLIGGLLGVGAHGGYSALTTWLPTYLKTERHLSVLSTGGYLAVIIAAFFFG
                     CLAASQLLDRIGRRQTILLFSVCCVGTVIVYLFVPLSNHAMLALGFPLGFFAAGIPAS
                     MGALFNELYPRGTRGTGVGFCYNFGRVVSAGFPVMVGHLAAQYSLGFAIGVDAVFAYA
                     IVAVSVMMLPETRGRTLAEDIPA"
     gene            1566..2399
                     /locus_tag="VKJ77_20815"
     CDS             1566..2399
                     /locus_tag="VKJ77_20815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006220409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC47773.1"
                     /translation="MNDSLVTGIDSHAHVFTQDLPLALGRRYAPAYDAPLERYRAMLT
                     SIGMSHGVLIQPSFLGFDNSYLLACLDAYPQQLRGVVMADPVNALGYIDDWHARGVVG
                     IRANLIGTQLPDFTDQQWTALLSRMTALDWHLEIQIDAGRLHHVAPALLASGVRIVID
                     HFGRFDPALGTGDPGFAYLTLLGQTRRVWVKVSAAYRVSAKPGDPEATFATSANAWSE
                     LLPAFGADRLLWGTDWPHTQFEQVCNPRHALHDLYRLVTSESHRQAVLIDTPAELFHF
                     R"
     gene            2485..>2721
                     /locus_tag="VKJ77_20820"
     CDS             2485..>2721
                     /locus_tag="VKJ77_20820"
                     /inference="COORDINATES: protein motif:HMM:NF014281.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tar ligand binding domain-containing protein"
                     /protein_id="HMC47774.1"
                     /translation="MFKNLSIKTGLTLATSVFVLLVLVVGTCAFVSLGRANHALNGMY
                     EHDLAGSTALTRSSELLLRCRSAKNRYESLIEDDK"
BASE COUNT          510 a          814 c          803 g          594 t
ORIGIN      
        1 aggataagat cgtactggca ccattcatag atccaataag cccagtaaac ctagagccac
       61 ggccggactt ccgcgtagac cacgggccgt cgacaagctg gccgagatcg cacgctccat
      121 gctgagctca acaggcaaac cgccaaaaac accctctaaa gtccgagcat cgcctgccga
      181 taacgggtaa acacctatcc cacgaagaag ccattcatat aaacatatat atgttttaac
      241 gattggttga ccattcgtta atctcggctc gcctcattca ttcaagcaag acaaagacgc
      301 acggagactc gatgttttcc tggtaccggc aggtttctaa aggtgagcga tacacgttct
      361 gggcgtgttt cggcggttgg gcgctcgacg ccctcgatgt ccagatgttc agtctcgtca
      421 tccccgcgat cattgcggaa tggggcatca gcaaaacgca ggcgggtctg gtgagcggtg
      481 tcacgctggt ggcgtcggcg ctgggcgggt ggatttgcgg tgcagcagcg gaccgttacg
      541 gccgcgtgaa aaccttgcag gtcaccgtcg tctttttctc ggtcttcaca ctgctgtctg
      601 cgttcgcgca gaactatccg cagttcatcg tgctgaaggc actgcagggc tttggcttcg
      661 gcggcgaatg ggcagcgggt gcggtgctga tggctgagac catacgcaac gaacatcgcg
      721 gcaaggcaat gggcgccgta caaagcgcgt gggccgtcgg ctgggccgca gccgtgctgc
      781 tttacgcgac cgtgttttcg ttcatgtcgc ccgatatcgg ctggcgggtg atgttcggaa
      841 tcggcatcgt gcctgcgctc ctgatcatct atatccgccg caatgtgaag gaacccgttg
      901 cgcccacgcg caaggaggcg ggactgaagg acgggaagga acgcacgccg cttctgtcga
      961 tcttcgcacc cgacgtaata cgtatgacgc tgattggtgg cctgctgggc gtgggcgcac
     1021 atggcggcta ttcagccctc accacctggt tgccgaccta cctgaagacc gagcgtcatc
     1081 tttcggtgct gagtaccggc ggttatctgg cggtgatcat cgcggcattt ttcttcggct
     1141 gtttggccgc gtcgcagttg ctggaccgga tcgggcgtcg tcagaccatc ctgctgttct
     1201 ccgtgtgctg cgtgggcacg gtcatcgttt acctgttcgt gccactctct aatcacgcga
     1261 tgctggcgct cggcttccca ctcggctttt tcgccgccgg cattccggcc agcatgggcg
     1321 cgctgttcaa cgaactctat ccacgcggca cgcgcggtac gggggtgggg ttttgctaca
     1381 acttcgggcg ggtcgtatcc gccggatttc ccgtgatggt cggacatctg gccgcgcagt
     1441 attcgctcgg attcgcgatc ggcgtggatg cggttttcgc ttatgcaatc gtcgctgtca
     1501 gcgtgatgat gctgcccgaa acgcgcgggc gcaccctagc cgaagacatc ccggcataga
     1561 tcgctatgaa cgatagccta gtcaccggta tagattcgca cgcccacgtc ttcacgcagg
     1621 atctgccgct cgccctcggt cggcgttatg caccggccta cgacgccccg ctcgagcgct
     1681 accgggccat gctcacgagc atcggaatgt cgcatggcgt cttgatccag cccagcttcc
     1741 ttggcttcga caacagctat ctgctcgcct gtctcgacgc gtacccgcag cagttgcgcg
     1801 gcgtcgtcat ggccgatccg gtgaatgctc ttggttatat cgacgactgg catgcgcggg
     1861 gtgtcgtggg aattcgcgcg aacctgattg gcacccaact ccccgatttc accgatcaac
     1921 agtggaccgc gttgctgtcg cgcatgaccg cgctcgactg gcacctcgaa atacagatcg
     1981 acgcaggccg tctacatcac gtggcgcccg cgttgctggc aagcggcgtg cggatcgtga
     2041 tcgatcattt cgggcgtttc gatcccgcgc tcggcaccgg cgaccccggc ttcgcttacc
     2101 tgaccctgct gggccagaca cggcgcgtgt gggtcaaggt atcggcggcg tatcgggtga
     2161 gcgcgaaacc gggggatcca gaagcgacct tcgccacgag cgcgaacgca tggtccgaat
     2221 tgctgcccgc tttcggcgcc gaccgcttgc tctggggcac cgactggccg catacccagt
     2281 tcgaacaggt ctgcaatcca cgacacgcgc tgcacgacct atatcgcctt gtcaccagtg
     2341 agtcacatcg gcaggcggtg ttgatcgaca cacccgcaga gttgttccac tttcgctaat
     2401 catcggaaat agaaagaacc ctcaagtctt ccgcttcggg tccgttaaac atatatatgt
     2461 tcatatcaat gaggccgacg gacagtgttc aaaaatcttt caatcaagac aggcttgacc
     2521 cttgcgacaa gcgtgtttgt cctgttggta ctcgttgtcg gaacatgtgc gtttgtctcg
     2581 ctgggccgcg ccaaccacgc gttaaacggc atgtacgagc acgatctggc gggaagcacc
     2641 gcgctgacgc gcagttccga attgctgttg cgttgccgct ctgcgaagaa ccggtatgaa
     2701 tcgctgattg aagacgacaa g
//
LOCUS       DATGBK010001494         3851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_156315, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001494 DATGBK010000000
VERSION     DATGBK010001494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156315"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..799
                     /locus_tag="VKJ77_20825"
     CDS             <1..799
                     /locus_tag="VKJ77_20825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006490494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HMC47775.1"
                     /translation="GGSVRGPAACCGVIGMKPTFGRVSRRGVAPARSTLDCVGPFARE
                     MQTLIDVMAAITPGFDEGVANTLPSSLRIGVVSADATREISDAVTNAPSLAGFASQGI
                     ELLNLRAAFDAGLTVINAETWAAFGHLLETGKLGADLDARLRVASKTTAADLAAAESV
                     RARFTAEVDHALQSVDVIVLPTLPALPITLEAARNGTSVIAMSSLIRPFNLSGHPALS
                     LPMPIAGSPLRAGLQIVGRKGADEFVCAIATCFEACFEACFEDAFAQ"
     gene            811..1554
                     /locus_tag="VKJ77_20830"
     CDS             811..1554
                     /locus_tag="VKJ77_20830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC47776.1"
                     /translation="MTERVVLVTGAARGLGAVIARRFHAAGYRVAIGDIAFNAAQELA
                     SELSADHSTALALNLDVTSKADFSAARDAILNKWQRVDALVNNAGASKVVPVMEITAE
                     QFDQVIHVNLRSVLFGCQVFGQYFADAGAGRIVNIASLAGQNGGSATGAHYAASKGGV
                     ITLTKVFARDLASRGVTVNAISPGPMDLAIVHESVPADKLNAVIASIPGGRLGSADYV
                     ADVAVMLAAENAYFANGACWDVNGGLFMR"
     gene            complement(1607..2845)
                     /locus_tag="VKJ77_20835"
     CDS             complement(1607..2845)
                     /locus_tag="VKJ77_20835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006404108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HMC47777.1"
                     /translation="MSGQTIQVTAYDGGKFAAYLAKPAQGSGPGLVLLQEIFGINGYM
                     KSMADRYAEEGYVVLVPDLFWRMKPGVELGYGEADFKEALGYNEKLDEENAVNDIAAT
                     IAAIRTLPEQAGKVGAIGYCLGGRLAMLAAARTDVDCAVSYYGVGLDAYLSKIPAIHC
                     PMIFHFAENDVMTPTASREKIIAALKEKPSIETYVYPGCDHAFATPEREHFDKPAAMM
                     AYSRTMTLLRKVLGPVYDLNQLWEMHCYYEFGTRDVNAVMPTMVAQPYVNHVPTMTGG
                     VGHDQLKRFYKYHFVDSNPADTRLIPVSRTIGSDRVVDEFVFCATHDREIDWLLPGLK
                     PTGKYFEVPMLAVICFRGDKLYNEHIYWDQASVLVQIGALDPTGLPVAGIQTAKKMVD
                     ETLPTNTLMPNWASSEGKPV"
     gene            complement(2866..3582)
                     /locus_tag="VKJ77_20840"
     CDS             complement(2866..3582)
                     /locus_tag="VKJ77_20840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007732732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC47778.1"
                     /translation="MQIEDSVAFVSGANRGVGARFVTSLLEGGARKVYAAARDCSALA
                     TGDSRIVPITLDITNPVQVAQAAATAGDVTLLINNAGINRLERAILPRDDTAARAEME
                     VNYFGTLGMCRAFTPALIANRGAVVNMLSILARVGLPMMGSLCASKAAALRMTECLRA
                     ELAEHHVRVLGVLPGAIDTDMSRDFPPPKLSVTEVVDAVFAALANGPDEVYVGAMAQG
                     VSAGLAADRDAVQKQFAGYL"
     gene            complement(3642..>3851)
                     /locus_tag="VKJ77_20845"
     CDS             complement(3642..>3851)
                     /locus_tag="VKJ77_20845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47779.1"
                     /translation="ALAPRVEALMTEVDDDKRMAGYRALSQEASEKSWVVPLLQAVTT
                     IAYRSNIDVKTFDSGYILPVEYKRK"
BASE COUNT          717 a         1186 c         1176 g          772 t
ORIGIN      
        1 cggcggctcg gtgcgcggtc ctgctgcctg ctgcggcgtg atcggcatga agccaacgtt
       61 cggacgcgtg tcgcgacgcg gtgtggcgcc ggcacggagc acgctcgatt gcgttggacc
      121 gttcgcgcgc gagatgcaga cactgatcga cgtgatggcg gctatcacac ccggcttcga
      181 tgaaggcgtg gcgaacacgt tgccgtcttc gctcaggatt ggcgtagtgt ccgccgatgc
      241 aacccgcgag atcagcgacg ccgtgacgaa cgcgccctcg cttgcgggct tcgcatcgca
      301 ggggatcgag ttgctcaacc tgcgcgccgc attcgatgca ggcctgaccg tgatcaacgc
      361 cgaaacgtgg gccgcgttcg ggcatctgct cgagaccggc aaactcggtg ccgatctgga
      421 tgcacgcctg cgggtggcat cgaagacgac agcggctgat cttgccgcgg cggaatcggt
      481 gcgcgcacgc tttaccgccg aagtcgatca tgcattgcag agtgtcgatg tcatcgtgct
      541 gccgacactc ccggctctac cgatcacgct cgaggcggcg aggaacggta cgtcggtgat
      601 cgccatgtcg tcgttgatcc ggccgtttaa tctcagcggt catcccgcgc tcagcctgcc
      661 catgccgatt gccggttcgc ctctgcgggc aggtttgcag atcgtcgggc gcaagggcgc
      721 ggacgaattc gtttgcgcta tcgctacgtg ctttgaagct tgttttgaag cctgttttga
      781 ggacgcattc gctcaatgac cggagacagc atgacggaaa gggtggtcct ggtgactggc
      841 gcggcacggg gtctcggcgc agtgattgca cggcgctttc acgctgcggg atatcgcgtg
      901 gcgatcggcg atattgcgtt caacgccgcg caggaactgg caagcgaact cagtgccgat
      961 cattcgacgg cgttggcgtt gaacctcgac gtgacatcga aggccgattt cagcgccgcg
     1021 cgcgatgcga tcctcaacaa atggcaacgc gtcgatgcat tggtcaacaa cgcgggcgcg
     1081 tcgaaggtcg tgccggtaat ggaaatcacg gcggagcaat tcgatcaggt catccacgtg
     1141 aatctgcgca gcgtgttgtt cggctgtcag gttttcggcc agtatttcgc cgatgcaggc
     1201 gccgggcgca tcgtaaatat tgcatcgctc gcggggcaga atggcggctc tgcgacgggt
     1261 gcgcactacg cggcatcgaa gggcggcgtc atcaccctca ccaaggtttt cgcgcgggat
     1321 ctcgcctcgc gtggcgtgac ggtcaacgcc atttcgcccg gcccgatgga cttggccatc
     1381 gttcacgaaa gcgtgcccgc cgacaagttg aacgcagtca tcgcgagcat tccaggcgga
     1441 cgtcttggct cggccgatta cgtcgccgat gtagccgtca tgctcgccgc ggagaacgcc
     1501 tactttgcga acggagcgtg ctgggatgtg aacggcggct tgttcatgcg ctgaggtttg
     1561 tgcgtttcag gcgacgggtc gcttggttcc ggtcgccttt ctcgcattaa accggcttgc
     1621 cttcactcga cgcccagttc ggcatcaacg tatttgtcgg caaggtttca tcgaccattt
     1681 tcttggcggt ctgaatgccc gcgacgggca agccggtcgg atccagcgcg ccgatctgca
     1741 ccagcaccga cgcctggtcc caatagatat gctcgttgta cagcttgtcg ccccgaaaac
     1801 agatgaccgc gagcatgggc acttcgaagt atttcccggt cggcttgagc cccggcaaca
     1861 accagtcgat ttcccgatca tgcgtcgcac agaacacgaa ctcgtcgacc acgcggtccg
     1921 agccaatggt gcgtgacacc ggaatcaggc gcgtgtctgc cggattcgaa tcgacgaaat
     1981 ggtacttgta gaaacgcttg agctggtcat ggccgacacc gccggtcatg gtgggaacgt
     2041 ggttgacgta gggctgcgcc accatcgtcg gcatgacggc attcacgtcg cgcgtgccga
     2101 attcgtaata gcaatgcatc tcccaaagct ggttcaggtc gtacacggga ccgagcactt
     2161 tacgcagcaa cgtcatggtc cgcgagtacg ccatcatggc cgcgggcttg tcgaagtgct
     2221 cgcgctcggg cgtggcgaat gcgtgatcgc aacccgggta cacgtaggtt tcaatcgatg
     2281 gtttttcctt cagcgccgcg atgatctttt cacgcgatgc ggtcggcgtc atcacgtcgt
     2341 tctcggcgaa gtggaagatc atcggacagt gaatcgccgg gatcttgctt aagtaggcat
     2401 cgagtcccac gccgtagtaa ctcaccgcgc aatccacgtc ggtgcgtgcg gctgcgagca
     2461 tcgcgagacg gccaccgagg caatagccaa tggccccgac cttccccgcc tgctcaggca
     2521 aggtgcgaat cgcggcgatg gtcgcggcaa tatcgttgac cgcgttctct tcgtcgagct
     2581 tctcgttgta accgagcgct tccttgaaat ctgcttcgcc gtagccgagt tcgacacccg
     2641 gcttcatgcg ccagaataaa tccggaacga gcaccacgta gccttcctcg gcatagcggt
     2701 cggccatcga tttcatatac ccgttgatgc cgaaaatctc ctgcagcaac actaggccgg
     2761 gacctgaccc ttgcgccggc ttcgcaagat acgccgcgaa cttgccgccg tcgtacgctg
     2821 tcacctggat tgtctgaccg ctcatcatct ctcctccgtc gatgttcaaa gataacccgc
     2881 gaactgcttc tggaccgcat cgcgatcggc cgcgagaccc gcactgacgc cttgcgccat
     2941 cgcgccaaca tacacctcgt cgggaccatt cgcgagcgcg gcgaacacgg cgtcgaccac
     3001 ttcggttacc gaaagcttgg gcggcggaaa gtcacggctc atgtcggtat cgatcgcgcc
     3061 gggcagcacg ccaagcacac gcacatgatg ttccgcgagt tcggcacgca ggcattcagt
     3121 catgcgcaac gccgccgcct tcgacgcaca caaggagccc atcatgggta acccgacgcg
     3181 cgcgagaatt gacagcatgt tcacaaccgc gccgcgattg gcgatcaacg caggcgtgaa
     3241 cgcacggcac atgccaagcg taccgaagta gttcacctcc atttcggcgc gcgcggcggt
     3301 gtcatcgcgg ggaagaatcg ctcgctcgag ccggttgatg ccggcgttgt tgatcagcag
     3361 cgtgacatcg cctgcggttg ctgcggcttg cgccacctga acggggttcg tgatgtcgag
     3421 cgtgatcggg acgatccgcg aatcgcccgt cgcaagggcg ctgcaatcgc gcgcggcggc
     3481 gtacaccttg cgcgcgcccc cttcgagcag gctcgtgaca aagcgcgcgc ctacgccgcg
     3541 attggcgcct gacacgaagg cgacggaatc ttcaatctgc atcgcatgct ccttggtttg
     3601 atagggactt aaatcgaggg actcgaatcg agggacccca atcacttgcg cttgtattcg
     3661 accggcagga tatagccgct atcgaaagtc ttcacatcaa tattcgatcg atacgcaatc
     3721 gtcgtcaccg cctgcagcaa gggcacgacc cacgatttct ccgatgcttc ctgactcagc
     3781 gcacgatacc cggccatgcg cttgtcgtca tcgacttcag tcatcagggc ttccacgcgc
     3841 ggcgcgagtg c
//
LOCUS       DATGBK010001495         2737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_17181, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001495 DATGBK010000000
VERSION     DATGBK010001495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17181"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..174
                     /locus_tag="VKJ77_20850"
     CDS             <1..174
                     /locus_tag="VKJ77_20850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009241406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HMC47780.1"
                     /translation="FESMDFTRQSPRAQNAHQRFLGTGEKTCIDCHKGIAHELPDMTQ
                     AMRDQQLREARSH"
     gene            185..880
                     /gene="ccmA"
                     /locus_tag="VKJ77_20855"
     CDS             185..880
                     /gene="ccmA"
                     /locus_tag="VKJ77_20855"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF010061.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HMC47781.1"
                     /translation="MKQNTFIPSEFSSARSGNALLSVDKLAFDRGGERLFSNVGFDVD
                     AGQVLQIHGPNGSGKTTLLRVLAGLLQPSAGTVRWRGRDAQARPEVWRQSLAYLGHLN
                     GISDDLTAAENLTFSSVLGEVAEERVEVQEKALESVGLDRYRHAIVRGLSAGQKRRLA
                     ISRLLLEHKPLWLLDEPAAALDEESSGVLERCIAGHLERGGIVLMTTHKLITTAPSAT
                     RNLYFEPCGRCSD"
     gene            868..1536
                     /gene="ccmB"
                     /locus_tag="VKJ77_20860"
     CDS             868..1536
                     /gene="ccmB"
                     /locus_tag="VKJ77_20860"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HMC47782.1"
                     /translation="MFRLTARIVQRELALTWRRRTAALGCLLFFVIAGSLFPLAVGAD
                     AALLQAIAPGVLWVTALFAAMLSLARLFGPDFADGALDQMLLSPRSLLTSVMAKIGAH
                     WLTSGFALVLLAPVLALQYGLPFDSVCRLTAALLLGTPALSLIGSMGAALTLGVRGGG
                     MLLAVLVLPLETPVLIFGANAADPSRAGAWSTANFSLLGASLLAALALCPVATVAALR
                     ISAE"
     gene            1576..2295
                     /gene="ccmC"
                     /locus_tag="VKJ77_20865"
     CDS             1576..2295
                     /gene="ccmC"
                     /locus_tag="VKJ77_20865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008446142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease CcmC"
                     /protein_id="HMC47783.1"
                     /translation="MNSSIALTGWLRYASPRPFHRLAGRMIPGFAIAALLLVMPGVQI
                     ALFIAPTDAVQGDVYRIMFVHVPAAWMSMLLYVVMAAYAALGLILNARLSAMMAGAIA
                     PTGALFTALALVTGALWGRPTWGAWWVWDARLTSELILLFLYLGFMSLHGAIDDTRRA
                     DRACAVLALAGVVNVPVIYFSVQWWYTLHQGASLSFGSGVSMDSSMLAGLVVMTLAFW
                     CYAIAMVLVRVRRIIDEREAA"
     gene            2295..2483
                     /locus_tag="VKJ77_20870"
     CDS             2295..2483
                     /locus_tag="VKJ77_20870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HMC47784.1"
                     /translation="MNLVNSLTGDDGDLWYLWVAFDITFLVLAIEIAITVGSNRRQRR
                     RGHVVQPHTRGSTLTEKP"
     gene            2480..>2737
                     /locus_tag="VKJ77_20875"
     CDS             2480..>2737
                     /locus_tag="VKJ77_20875"
                     /inference="COORDINATES: protein motif:HMM:NF015085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017003 - protein-heme linkage [Evidence
                     IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HMC47785.1"
                     /translation="MKGRARRACIVAAGLVALGGDTALVLNALNANVMFFVTPSQLAS
                     GSVKHAARLRIGGLVERGSVERDASGLTVRFMITDTAREIPV"
BASE COUNT          432 a          813 c          913 g          579 t
ORIGIN      
        1 ttcgagtcga tggatttcac gcgtcaaagc ccacgggcgc agaacgcgca tcagcgcttt
       61 ctcggcacgg gtgagaagac gtgtatcgat tgtcacaagg gtattgcaca cgaattgccg
      121 gacatgactc aggcaatgcg agatcaacag ctgcgcgaag cgcgttcaca ttgagaggtc
      181 tacgatgaag cagaacacgt ttatcccgtc ggaattctct tcggcaagat caggcaatgc
      241 acttttgtct gtcgacaaac tcgccttcga ccgcggtgga gaaagactct ttagtaacgt
      301 tgggttcgac gtcgacgctg gccaggtgct gcagatccac ggcccgaacg gcagcggcaa
      361 gaccacgttg ctgcgcgtgc tggcggggct gttgcaaccg agcgcgggca cggtgcgatg
      421 gcgcggcagg gatgcgcagg cacgtccgga agtgtggcgg caatcgctcg cctatctcgg
      481 gcatctgaac ggcatcagcg acgatctgac cgctgccgag aacctgacct tcagctcggt
      541 gctgggagaa gttgccgaag agcgggtcga ggtccaggag aaggcgctcg agagcgtggg
      601 gctcgaccgg taccggcacg cgattgtgcg cggcctgtct gcggggcaaa agcgccggct
      661 cgctatctcg cgcctgttgc tggaacacaa gccgctgtgg ttgctcgacg aaccggcggc
      721 agctttggat gaagagtcat ccggcgtgct cgagcgctgc attgcgggac acctggagcg
      781 aggtggcatc gtattgatga ccacgcataa gctcatcacc accgcgcctt cggccacccg
      841 taatctctac ttcgaaccgt gcggccgatg ttccgactga cggcgcgcat cgtgcagcgc
      901 gaactcgccc tgacgtggcg gcgacgcaca gccgccctcg gctgcctgct gttcttcgtg
      961 atagcgggga gcctgtttcc gctcgcggtt ggcgcggacg cggcgttgtt gcaggctatc
     1021 gcgcccggcg tgttgtgggt gaccgcgctg ttcgccgcga tgctgtcgct cgcgcgttta
     1081 ttcggccccg attttgccga tggcgcactc gaccagatgc tgctttcgcc gcgttcgctg
     1141 ctcacgagcg tcatggcgaa gattggcgcg cactggctca cgagcgggtt cgcgctcgtg
     1201 ttgcttgcgc cagttctggc gcttcaatac ggtttgccct tcgatagcgt ctgccgcctc
     1261 accgcagcgt tgttgctcgg aacgcctgct ctgagcctca tcggttcgat gggcgcggcg
     1321 ctgacgctcg gcgtgcgagg cggcggcatg ctgctcgcgg tattggtgct tccactcgaa
     1381 acaccggtgc tgatcttcgg tgccaacgcg gccgatccat cacgcgccgg cgcatggtca
     1441 acggccaatt tttcgctgct cggcgcaagc ctgctggccg cgctcgcgct gtgcccggtg
     1501 gcgaccgtcg cggcactacg tatttcggcg gaatgagtcg gcgcagtgag tcggcgcaat
     1561 gaggacacat cgatcatgaa ctcgtctatc gcgctgaccg gatggttgcg ctacgcatcg
     1621 ccgagaccgt ttcaccggct ggcgggaagg atgattcccg gcttcgctat tgcagcgcta
     1681 ttgctcgtga tgccgggcgt tcagatcgcg ttgttcatcg cgcctacgga tgccgtgcag
     1741 ggcgacgttt atcgcatcat gttcgtgcat gtgccggcgg cgtggatgtc gatgctgctc
     1801 tatgtcgtga tggccgctta cgcagcgctt ggcttgatac tcaacgcacg cctgtccgcg
     1861 atgatggccg gcgcaatcgc cccgaccggt gcgttgttca cagccctcgc gctcgtgacg
     1921 ggtgcactgt ggggccgtcc gacgtggggg gcgtggtggg tctgggacgc ccggctaacg
     1981 tccgaactga ttctgctgtt cttgtacctg ggtttcatgt cgctgcatgg cgctatcgac
     2041 gacacccgcc gtgccgatcg tgcctgcgcc gtgctcgcac tcgccggcgt ggtcaacgtg
     2101 cccgtcatct atttctcggt gcagtggtgg tacacgctgc atcagggtgc atcgctttcg
     2161 ttcggcagcg gcgtatcgat ggacagctca atgctcgccg gccttgttgt gatgacgctg
     2221 gcgttctggt gttacgcgat tgccatggtg ctggtgcggg tgcggcggat tatcgatgaa
     2281 cgggaggcgg cgtgatgaat ctcgtgaaca gcttgactgg tgacgatggc gatctctggt
     2341 acctgtgggt cgcgttcgac atcaccttcc tcgtgctcgc catcgagatc gcaatcactg
     2401 tcggttcgaa ccggcggcag cgcaggcgag gacatgttgt ccagccgcac acgcgcggca
     2461 gcacgttgac ggagaaaccg tgaaagggcg cgcgcggcgc gcgtgcattg tcgccgccgg
     2521 gcttgtggcg ctcggcggcg acaccgcgct cgtgttgaat gcgttgaacg ccaacgtgat
     2581 gtttttcgtc acgccctcgc aactcgcttc gggcagcgtg aaacacgcag cacgattgcg
     2641 cataggcggc ctggtggagc gcggatcggt cgaacgcgat gccagcggct tgaccgtgcg
     2701 tttcatgatc accgatacgg ctcgggagat tccggtg
//
LOCUS       DATGBK010001496         1617 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_41196, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001496 DATGBK010000000
VERSION     DATGBK010001496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41196"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VKJ77_20880"
     CDS             <1..273
                     /locus_tag="VKJ77_20880"
                     /inference="COORDINATES: protein motif:HMM:NF014860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47786.1"
                     /translation="RTMNETDGLIKLIGDAKTDLLLGMHIVAPQAESLIGEGLIAIEM
                     GATIEDIGLSIHPHPTLTESIQDAAEVIHGKAIHIPNPKPKAPAAV"
     gene            complement(275..1255)
                     /locus_tag="VKJ77_20885"
     CDS             complement(275..1255)
                     /locus_tag="VKJ77_20885"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HMC47787.1"
                     /translation="MADSSASELRGKRVMVTGGAGFLGQSVVEALRARGVTEIVVPRS
                     REYDLTKSDAIEALFTKHRPEIVFHLAAVVGGIGANRENPGKFFYENAIMGIQMIEYA
                     RRFEVAKTIVAGTVCAYPKFAPIPFREESLWDGYPEETNAPYGIAKKVLLVQCQAYRE
                     QYGMNAIYLLPVNLYGPRDNFDLQSSHVIPALIRKAVEAQESGAEELVVWGDGSATRE
                     FLYVDDAARGLIEAAERYNGQEPVNLGADDEVPIRTLVETVADLCGFSGRIVWDTTKP
                     NGQPRRRLDTSRAKREFGFTANTTLRDGLLKTIDWFKSTRSVREEAGAAR"
BASE COUNT          347 a          511 c          443 g          316 t
ORIGIN      
        1 cgcacgatga atgaaaccga cggcctcatc aagctaatcg gtgacgccaa gaccgatctt
       61 ttgctcggca tgcacatcgt tgcaccgcaa gccgaatcat tgatcggtga ggggttaatc
      121 gcgatcgaaa tgggcgcgac gatcgaggat atcggcttgt cgatccaccc gcatccgacg
      181 ctgacggaat cgattcaaga cgcggccgaa gtcattcacg gcaaggcgat tcacattccg
      241 aatcccaagc ccaaagcgcc ggccgcggtc taaattatcg cgcggcgcct gcttcttcac
      301 gaaccgagcg cgtcgattta aaccaatcga tcgtttttag cagcccatca cgcagcgtcg
      361 tgttcgcggt aaaaccgaac tcacgcttcg cacgcgacgt gtccaaacgc cggcgtggct
      421 gaccgttggg cttggtcgtg tcccaaacga tacgaccgga gaaaccacac aggtcggcaa
      481 ccgtctcaac gagggtccga ataggcactt catcatcagc gcccaaattg acgggctctt
      541 gtccgttgta gcgttcagcg gcctcgatca agccacgcgc ggcatcgtcg acatacagaa
      601 actcgcgcgt tgcgctgccg tcgccccaaa ccacaagttc ttcggcgccg ctttcttgcg
      661 cttcgaccgc cttgcgaata agagccggga taacatgcga cgactgcagg tcgaaattat
      721 cgcgcggacc gtacaaattt accggcagca agtagatggc gttcatgccg tactgctcgc
      781 gatacgcctg gcattgcacg agcagtacct tcttagcgat accgtatggt gcgttcgttt
      841 cttcgggata tccatcccaa agggattctt ctcgaaacgg aatcggcgcg aatttcggat
      901 acgcgcagac ggtcccggcg acgatcgtct tggcaacctc aaagcgccgc gcgtactcga
      961 tcatttggat gcccatgatc gcgttctcgt aaaagaactt cccggggttc tcgcgattgg
     1021 cgccgatgcc gcccacgacg gcggcaagat gaaagacgat ttcggggcga tgtttcgtga
     1081 agagcgcctc gatcgcatca ctttttgtaa ggtcgtattc gcggctgcgt gggacaacga
     1141 tctcggtgac gccgcgggcg cgcagagctt caaccacgga ttggcctaag aaaccggcgc
     1201 ctcccgtgac catgacgcgc ttaccgcgta actcgctcgc ggaactgtcc gccatgaagt
     1261 cctccaaaaa ccgccggctc tccaccgtgc accgctaaat agaccttccg ttatacggta
     1321 tttccccgac gcactccgct tgagcgcggc gcccgcagca cgtcccgaga gtgtttgacg
     1381 aggcctacga gaactgtcta acgatgaaac cgcccgccct gcgtttggtt gcttcgctcc
     1441 gaaccggact ccggtcgtga gcgccacgcc cggccgcccg gcccgcgccg aatccgacta
     1501 ttccgtcgcc gaattgctgc aagcatgcaa agatcgccag gccgtcatca acgagctttc
     1561 ggagcagctc gatcgcgcac aagccacggc ggccgaacga ggcagactca ttgcgag
//
LOCUS       DATGBK010001497         1521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_64142, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001497 DATGBK010000000
VERSION     DATGBK010001497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64142"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      <1..190
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            362..1450
                     /gene="cobW"
                     /locus_tag="VKJ77_20890"
     CDS             362..1450
                     /gene="cobW"
                     /locus_tag="VKJ77_20890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein CobW"
                     /protein_id="HMC47788.1"
                     /translation="MQMRKIPVTVVTGFLGSGKTTLMRHILQNAKGLRIAVIVNEFGE
                     LGIDGEILKGCNIGCEDESVTDQPNLYELSNGCLCCTVQEEFYPVMEQLVERRDQIDH
                     VLIETSGLALPKPLVQAFNWPSIKNAFTVDAVVTVVDGPAAASGQFAANPQAVDAQRR
                     ADPNLDHESPLHELFEDQLASADLVILNKTDLIDETQQRAVETLIRGEIPAGVKIVPA
                     QMGQLDLHALLGLEAASETTIHLRVDHHGSVDDEGHADHHHDDFDSVVVEARVESREA
                     VVAALRSLVDANTIYRVKGFAALPGTPMRLVVQGVGQRFDTYFDRRWTAAEAAIETSR
                     FVLIGEDLDQPRLQQALVAALANAPVQA"
BASE COUNT          318 a          450 c          464 g          289 t
ORIGIN      
        1 aacccggccg tgccaacctg cgctgccccc gcaacggtaa agcgaaaatc gcgcgacgtg
       61 gtttcaccct gattcacgcc acctcgcacg gtaaagccgg cttcgaaaac cactgcatgg
      121 ctatgtcatg tgggaaggtg aagcggcatt ttcgccagcc cggataccgg ccggagcgag
      181 tcaacacctg aagcggacgt ttgtcgcggg gatgcggcat acggtcgaca cttttcacca
      241 tgcttttccg gattgccatc ctgcatcgcg acatccgtgc gcgcatttta ttgtgcacat
      301 gagtcagcaa agggcgacgc attccggcag caagcagcca atcgatacta cggagcaacg
      361 gatgcaaatg cgcaaaatcc cggtcacggt cgtaacgggt ttcctcggca gcggcaagac
      421 cacattgatg cggcacatcc tgcaaaacgc gaaagggctg cggatcgcgg tgatcgtgaa
      481 cgaattcggc gaactgggca tcgacggcga aatcttgaag ggctgcaaca tcggttgcga
      541 ggatgaaagc gtcacggatc aaccgaatct gtatgaactg tcgaacggct gtctctgctg
      601 caccgtacag gaagagtttt atccggtgat ggagcaactc gtcgagcggc gtgatcagat
      661 cgatcacgtg ctgatcgaga cctccggcct ggcgttgccc aagccgctcg tgcaggcttt
      721 caactggccg tccatcaaga atgcgttcac cgtggacgcc gtcgtgacgg tggtcgacgg
      781 ccctgccgca gcaagcggcc agttcgcggc gaacccgcag gcggtcgacg cacaacgccg
      841 cgccgatcca aacctcgatc acgaatcgcc gctgcatgag ttgtttgaag atcaactcgc
      901 ttcagcggat ctggtgattc tcaacaagac cgatctgatc gatgaaacgc agcagcgcgc
      961 ggtggaaacg ctgattcgcg gcgagattcc ggcaggcgtg aagatcgtgc cggcgcaaat
     1021 ggggcagctc gatctgcatg cgctgctcgg gctcgaggcg gcatcggaaa cgactattca
     1081 tctgcgtgtc gatcatcatg gctccgtcga cgacgaaggc cacgccgatc atcatcacga
     1141 cgatttcgat tcagtcgtgg tggaagcacg ggtcgagtcg cgcgaggctg tggtcgccgc
     1201 actgcgctcg ctggtcgatg ccaacacgat ctatcgcgtg aagggtttcg cagcgttgcc
     1261 ggggacgccc atgcggcttg tcgtgcaagg ggtaggccag cgtttcgata cctacttcga
     1321 ccgccgctgg actgctgcgg aagcggccat cgagaccagc cggttcgtgc tgattggtga
     1381 agatcttgat cagccacgtc tgcaacaagc gctggtcgcc gcgcttgcca acgcacccgt
     1441 gcaggcctga tccatgcatc tgctacgcac gacgcccggc ggttttgtcg acgacgcagc
     1501 gggcgtcatg cgtatcgacc a
//
LOCUS       DATGBK010001498         3867 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_202960, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001498 DATGBK010000000
VERSION     DATGBK010001498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3867
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202960"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..553)
                     /locus_tag="VKJ77_20895"
     CDS             complement(<1..553)
                     /locus_tag="VKJ77_20895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47789.1"
                     /translation="MKTSSPDRSVRSAVPLVQADVVGLLGFLGIVIVAMSFASDRFLT
                     TGTFVSVAFQLPELGLFTLAMLMPLISGGFNLAVTFTANIAGLAMAWVLHSQGGADAG
                     AGAIVLGICAALATGAAAGWIMGAIIAHTGASPILVSLSMMIFLRGLGEFLPHGGDIS
                     GFPPFVLTLGNGLMLGVPVPLWIF"
     gene            complement(550..1563)
                     /locus_tag="VKJ77_20900"
     CDS             complement(550..1563)
                     /locus_tag="VKJ77_20900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47790.1"
                     /translation="MPDLRKWGIGSIEALLILVIAAMVVGLGATTSTFLTLPNLFDLL
                     NQSAVNIIFAAGLLVVLIAGGIDISFAVGASVVQYLTALTVMRLGGGDWALGFLVAAG
                     FGCLLGAINATIIYHFRIVSIVVTIATFNVFFGGLMFLTGGVSIYDLPDWWMNRVSLV
                     SFKTSSGVAELALPVAVMAVMVAATWFLLRRTTIGRQLYAMGDNPEAARRVGVNMGAM
                     HYVAFGWLGMMAGIAGLMQAHYVQEVVPNALYGRELDVLAAVVLGGARLGGGRGTILG
                     AILGVLLTAITANGLNLLGISPYAFKMIIGAIILIAITLSSDGLAKLVGSRFTLPRAK
                     VSS"
     gene            complement(1556..3085)
                     /locus_tag="VKJ77_20905"
     CDS             complement(1556..3085)
                     /locus_tag="VKJ77_20905"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017405893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC47791.1"
                     /translation="MPVAVDAGGVGGASGTALLKLENITKIFGGVKALQAVKFDVMPG
                     EVVCLAGENGCGKSTLIKVISGVYQPEAEAVMLMDGQSIGGLEPSKARDLGIQVIWQD
                     LALFPEMTVAENIAFERNLGPRPRLVNYGQMKIAARRILERLGVAIDLGRSVRSLSIA
                     QRQIVAIARALVADARLVFMDEPTASLSHAETKALLTIVRRLSADGIAVVFVSHRLAE
                     VLDVCTRVTVLRDGQYVGTFPTAGMTQTRLTELMTGRTFDYTVRTTDLSAAPVVLNVE
                     SLSRRNEYDAVSFCVKKGEILGVTGRLGAGRTELALSLFGMTRPDAGAVSLDGKKLSL
                     GSNRDAIRAGIAYVSEDRLQLGLVQQQSIGDNTVAAVLDDLLDATRLIAPKKRDALIR
                     DWIGQLAVKIGKTEDAVSTLSGGNQQRIVLAKWLATNPKLLILDSPTVGVDVGARAGI
                     FAIIHKLAEQGMAILLISDEIPEVYFNADRILHMRNGRMVAEYVPGTTTIDQIERDVH
                     A"
     gene            complement(3238..>3867)
                     /locus_tag="VKJ77_20910"
     CDS             complement(3238..>3867)
                     /locus_tag="VKJ77_20910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012216468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC47792.1"
                     /translation="QKNADWDFELASVKGFGEAYAKRMATALGGKGEYAVFVGSLTVP
                     LHNAWADAAIAYLKANDPGMTLVGDRYGVAEDVDASRKTALDLMRAHPNLKAILAFGS
                     QGPIGAARAVAEKHEAGNILVLGPFSPGQGKRLVHDGVLTGGYMWNPEIAGEVFVTLG
                     VMVAKGEPIKDGTKIEGLGVVHPDGHNLIVDQLVDLNAKTVDDLAKMGL"
BASE COUNT          835 a         1236 c         1127 g          669 t
ORIGIN      
        1 cgaagatcca aagcgggacc ggaacgccga gcatgaggcc gttgcccagc gtcaacacga
       61 aaggcggaaa cccggaaatg tctccgccgt ggggcaggaa ttctccaagc ccgcgcagga
      121 agatcatcat tgaaagggat accaggatcg ggcttgcccc ggtatgcgcg atgatggccc
      181 ccatgatcca tccagccgcg gcgcccgtag caagtgcagc gcagatccca agcacgatcg
      241 cgccggcgcc ggcatccgcg ccgccctgcg aatgcagcac ccatgccatc gcgagcccgg
      301 ctatgttcgc cgtgaacgtg actgccagat tgaagccgcc ggaaatcaac ggcatcagca
      361 tggccagcgt aaagagcccg agttcgggca actggaacgc aaccgaaaca aaggtgccgg
      421 tggtaaggaa gcgatccgag gcgaagctca tggccacgat cacaatgccg aggaaaccta
      481 atagaccgac aacatcggct tgcactagcg gtacagccga acgaaccgaa cgatcgggcg
      541 aggaggtttt catgacgaga cctttgcgcg tggaagcgtg aatcgcgatc cgaccagctt
      601 ggccaagccg tcgctcgaca aggtgatggc gatcaaaatg atggcgccga tgatcatctt
      661 gaacgcgtac ggcgaaatcc caagcagatt caagccgttc gcggtgatgg ccgtcagcag
      721 aacgcccaag atggcgccca ggatcgttcc gcgcccgcca cccagccggg caccgccgag
      781 taccacagct gccagtacat cgagttcgcg gccgtacagc gcgttgggca ccacctcttg
      841 cacatagtgc gcctgcatca ggcctgcgat accggccatc atgccgagcc agccaaaggc
      901 tacgtaatgc atcgcaccca tgttgacacc cacacgccgc gccgcttcgg ggttgtcgcc
      961 catggcgtag agttgccggc cgatagtcgt gcgccggagc aggaaccagg tggctgcgac
     1021 catgactgcc atgaccgcga cgggcagcgc gagctccgcg accccgcttg acgtcttgaa
     1081 cgagaccagc gaaacgcggt tcatccacca gtccggcagg tcatagatgg acacgccgcc
     1141 cgtcaggaac atcaagccgc cgaagaacac gttgaaggtc gctatggtca cgacgatcga
     1201 tacgatgcga aagtggtaaa tgatggtggc attgatggcg cccagcagac agccgaaccc
     1261 ggcggccacc agaaagccta atgcccagtc gccgccaccc agccgcatga cggtgagcgc
     1321 ggtcagatac tggaccaccg acgcgcccac ggcgaacgag atgtcgatcc caccggcaat
     1381 gagcacgacc agcaatcccg ccgcgaagat gatgttgacc gcactttggt taagcaggtc
     1441 gaacaggttg ggcagggtga gaaacgtcga agtcgtagcg ccgagcccga ccaccatggc
     1501 cgcgatgaca agaatcagca gggcctcgat cgaaccgatc ccccatttgc gcaggtcagg
     1561 catggacgtc tcgctcgatt tggtcgatgg tcgtggttcc gggcacgtat tcagcgacca
     1621 tgcgcccatt gcgcatatgc agaatacggt cggcgttgaa atagacctca gggatttcgt
     1681 cggagatcag caagatagcc atgccctgct cggcgagctt gtggatgatg gcaaaaatgc
     1741 cggctcgcgc acccacgtcg acccctaccg tgggcgaatc caggatcaac agtttcggat
     1801 tggtcgccag ccatttggca agcacgatgc gctgctgatt gccccctgaa agtgtcgata
     1861 ccgcgtcttc cgtcttcccg atcttgaccg ccagttgccc aatccaatcg cgaatcagtg
     1921 catcacgctt cttgggtgcg atcagacgcg tggcatcgag taaatcgtcc agcacggcgg
     1981 ccacggtgtt gtcgccgata gactgctgct gcaccaggcc tagctgaaga cgatcttcgg
     2041 agacataggc aatgcccgcc cggatagcgt cccggttcga gccgagcgat aacttctttc
     2101 catcgaggct gaccgcgccg gcatccggcc gcgtcatgcc gaacagcgac aacgccagtt
     2161 ctgttcgccc tgcgccaagg cggccggtaa cgccaagaat ctcgcctttc ttcacacaga
     2221 aggaaactgc atcgtattca ttgcggcgtg acagactctc gacgttcagc acgacgggcg
     2281 cagcggacag gtccgtggtc cgcaccgtgt agtcgaatgt gcggccggtc atgagttccg
     2341 tgagacgggt ttgcgtcatg cctgcggtgg gaaacgtgcc gacatactgt ccatcacgca
     2401 acaccgtcac gcgcgtgcat acgtcgagca cttcggcaag ccggtgactg acaaacacaa
     2461 ctgcgatccc gtctgccgac aggcgccgca cgatcgtcag cagtgctttg gtttcggcgt
     2521 gactgagcga cgcagtcggt tcgtccatga acacaagccg ggcatcggcg acgagtgcgc
     2581 gggcaatcgc cacgatctgc cgctgcgcga tcgacagcga gcgcacggag cgaccgaggt
     2641 caatcgcaac gcccaaacgc tccaaaatgc ggcgagcggc gattttcatc tggccgtagt
     2701 tgaccaggcg cggacgagga ccgaggttgc gttcgaaggc aatgttctcc gcaacggtca
     2761 tctcgggaaa gagcgcgagg tcctgccaga tcacctgaat gccgaggtcg cgggcctttg
     2821 acggctccag cccgccgatt gattgcccgt ccatcagcat gacggcttcg gcttcgggct
     2881 gatagacgcc gctgatcacc ttgatcagcg tgctcttgcc gcagccgttt tcaccggcga
     2941 ggcacaccac ctcgcccggc atcacgtcga acttcacggc ctgcagcgcc tttacgccac
     3001 caaatatctt ggtgatattt tcaagcttga gcagcgccgt gccactggcg ccaccaacgc
     3061 cgccggcgtc gacagccacc ggcatctcgc tcgcgttgcc tcgcgagggt gcgaggcgat
     3121 ccttcgaagc cgctggaacc atgaaaacac tccgatgcta ctcatacctt gcctgaccgc
     3181 tcgagtgaaa gacagccttg gccgcccctc acccgtctag agaaacgaga cgatcgttca
     3241 gagccccatc ttcgcgagat cgtcgacggt tttcgcgttg agatccacca attgatccac
     3301 gatcaggtta tggccgtcag gatgaacgac acccaggcct tcgatcttcg taccgtcctt
     3361 gatcggttca cccttcgcaa ccatcacacc caaggtcacg aacacttcgc ctgcaatctc
     3421 gggattccac atatagccgc cagtcaggac accgtcgtgc acgagacgct tgccctgccc
     3481 cggcgagaac ggcccgagca cgaggatatt tcccgcttca tgcttctcgg caaccgcgcg
     3541 agctgccccg atcgggccct ggctgccgaa ggcaagaatg gccttgaggt tgggatgcgc
     3601 acgcatcagg tcgagcgcgg tcttgcgcga cgcgtcgaca tcttcagcaa caccataacg
     3661 gtcgcccacc agcgtcatgc cggggtcatt cgccttgaga tatgcgatgg cggcatcggc
     3721 ccatgcgttg tgcaaaggca cggtcagcga gccgacaaag acggcgtatt cgcccttgcc
     3781 gcccaacgcg gtcgccatgc gctttgcgta cgcttcgccg aagcccttga ccgaagcaag
     3841 ttcgaagtcc caatcagcat tcttttg
//
LOCUS       DATGBK010001499         3087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_179274, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001499 DATGBK010000000
VERSION     DATGBK010001499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3087
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179274"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            330..1256
                     /locus_tag="VKJ77_20915"
     CDS             330..1256
                     /locus_tag="VKJ77_20915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase A"
                     /protein_id="HMC47793.1"
                     /translation="MSFLYKGSPERGAQWARLFAQKAPDMPFHVWPETGDPAKVRYLA
                     AWQPPEDPARTLPNLEVVFSVGAGVDQFDLSGVPEHIPVVRMIEPGIVEGMVEYVTHA
                     VLTIHRDLVDYQLQQQQKTWNPLSVRAASSRRIGVLGLGVLGTAVLERLTLFGFACAG
                     WSRSGRDIEGVECYAGASTLDSFLARTDILICLLPLTDATRGMLNTALFNKLPRGASL
                     IQTGRGPHLNQDDLLAALASGQLQNAILDVTDPEPLPETHPLWTHPRVRITPHIASET
                     RPDSAVEVVLENLRRHREGLPMIGQIDRSRGY"
     gene            1446..2885
                     /locus_tag="VKJ77_20920"
     CDS             1446..2885
                     /locus_tag="VKJ77_20920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008346959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HMC47794.1"
                     /translation="MSIQSLIEADRKHLIHPVINYRAHEARGVTVLDSASGAFLRDAE
                     GNELLDAFSGLWCVNVGYGQPSIVKVAAEQMARLPYATSYFHFGNAPAIELAEKLVEL
                     SPASLQHVYFTLGGSDAVDSAVRFITHYFNATGRSSKKHIIALERGYHGSSSVGAGLT
                     ALPAFHRNFDLPLPNQHHIPSPYAYRNKFADDAALIAASVAALETKVAALGADNVAAF
                     FCEPIQGSGGVIVPPFGWLKAMSEACRKLDILFVADEVITGFGRTGPLFACQAEDVEP
                     DLMTVAKGLTAGYAPMGAVLMSDAVYQGIANGDDAAIVGHGHTYSAHPVSAAIGLEVL
                     RLYHEGGLLENGVRHAERFARGLDALLAHPLVGDSRHRGLLGALELVSDKETRQGFDA
                     SLHLSDRITAAAYRNRLVFRAFGDNILGFAPALSYTEAEFDLMFERLEKTLDDVLAEP
                     EVRAALKLNKASGGAKTGVKVEMKAHVAA"
     gene            2956..>3087
                     /locus_tag="VKJ77_20925"
     CDS             2956..>3087
                     /locus_tag="VKJ77_20925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HMC47795.1"
                     /translation="MSSEGKLDRIDLRILSQLQKKGRITNVELADAVGLSPSPCLIRV
                     "
BASE COUNT          640 a         1072 c          835 g          540 t
ORIGIN      
        1 cacacatccg tggctcttgc gagtaccgtg cttttggggt acccatgtat aaaaaccgca
       61 cgctgtggac acttacgagc ccgcgttttg aaagcgtttt ctttgcttcg tttctttgtc
      121 gctttggaca aagaaatgac gtgccgccac gcacagtggc taatagtgat gaagagaaaa
      181 tccgactcat gcagaccgct aacgctgaaa gcagcaaccc ggcactgact cagaccgcta
      241 actccggagc ctggcaaccc ggcatcaact ccgaccgcta cccctccaaa accccacccc
      301 cccaaacccc gtccaccggc gcgagcgaaa tgagctttct ctataaaggc agtcccgaac
      361 gcggagccca atgggcaagg ctctttgccc aaaaagcccc tgacatgccc ttccacgtat
      421 ggccagaaac cggcgatccc gcgaaggtcc gctacctcgc cgcctggcaa ccacccgaag
      481 accccgcccg caccctgccg aacctcgaag tcgtcttctc ggtcggtgca ggcgtcgatc
      541 aattcgacct ctccggcgta cccgaacaca tcccggttgt acgcatgatc gaacccggca
      601 tcgtcgaagg aatggtcgaa tacgtcaccc acgccgtgct caccattcac cgcgacctcg
      661 tcgactacca actgcagcag caacaaaaaa cctggaaccc cctgtcagta cgcgcagcgt
      721 catcccgacg catcggcgtg ctcggcctcg gcgtactggg cactgccgtg ctggaacggc
      781 tgacactatt cggcttcgcc tgcgccggct ggagccgctc aggccgggac atcgaaggcg
      841 tcgaatgcta cgccggcgcc agcacactcg actcgttcct cgcccgcacc gacatcctga
      901 tctgcctgct ccccctcacc gacgccaccc gcggcatgct gaacaccgca ctattcaaca
      961 agctgccacg cggcgcatcg ctgattcaaa ccggccgcgg cccgcatctc aatcaggacg
     1021 acctgctcgc agcgcttgcg agcggccaac tacaaaacgc catcctcgac gtcaccgacc
     1081 ccgaaccgct cccggaaacg catccgctat ggacgcaccc gcgcgttcgg atcacgccgc
     1141 atatcgccag cgaaacccgg ccggacagcg ccgtggaagt cgtgcttgag aatttgcggc
     1201 gccatcgcga aggcctgccg atgatcggcc agatcgatcg cagccgcggc tactgaattt
     1261 gccccctcac cacggcaaat cacgacaaat gaccgttttt acgcgcccgc ggcagaaaat
     1321 gctgcgggcg cgctgcaaaa cgcggcatcc gcgctatttc acgaattgtt tagggcgtcg
     1381 ggcgccaccc gccttctcta gtatggaacg gtcatcagcc cctttccgcg acgagaaaat
     1441 tccccatgtc gattcaatcg ctcatcgaag ccgaccgtaa gcatctgatt catccggtca
     1501 tcaactaccg cgcgcacgaa gcccgcggcg tcaccgtcct cgactccgcc agcggcgcat
     1561 tcctgcgcga cgccgaaggc aacgaactcc tcgacgcctt ctccggcctc tggtgcgtca
     1621 atgtaggcta cggccagccg agcatcgtga aagtagccgc cgaacaaatg gcccgcctgc
     1681 cctacgccac cagctatttc cacttcggca acgcacccgc gatcgaactg gccgagaaac
     1741 tggtcgagct gtcgcccgcc tcgttgcagc acgtgtattt cacgctgggc gggtccgacg
     1801 cggtcgactc agcagtgcgt ttcatcacgc actacttcaa cgcgaccggc cgctcgtcga
     1861 agaaacacat catcgcgctc gaacgcggtt accacggctc atcgtcggtc ggcgcaggac
     1921 tgaccgcact gccggcgttc catcgcaact tcgacctgcc gctgccgaac cagcatcaca
     1981 tcccctcgcc gtatgcgtat cgcaacaagt tcgccgacga tgcagcgctg atcgccgcgt
     2041 ccgtcgccgc actggaaacg aaggtcgcag cactcggggc agataacgtc gcggcgttct
     2101 tctgcgagcc gatccagggc tcgggcggcg tgatcgtgcc gccgttcggc tggctgaaag
     2161 ccatgagcga agcgtgccgc aagctcgaca tcctgttcgt cgccgatgaa gtcatcaccg
     2221 gtttcggccg taccggcccg ctgttcgcct gccaggccga agacgtcgaa ccggacctga
     2281 tgaccgtcgc caagggcctg acggccggtt acgcaccgat gggcgcagta ttaatgtcgg
     2341 acgccgtgta ccagggcatc gcaaacggcg acgacgccgc gatcgtcggc catggtcata
     2401 cgtattcggc gcacccggtc agtgcggcca tcggcctcga agtgctgcgc ctttatcacg
     2461 aaggcggcct gctcgagaac ggcgttcgtc acgccgagcg tttcgcgcgc ggcctcgacg
     2521 cgttgctcgc gcatccgcta gtcggcgatt cacgtcatcg cggattgctg ggcgcgctcg
     2581 aacttgtctc cgataaagaa acccgccaag gcttcgacgc atcgcttcat ttgtccgacc
     2641 ggatcacggc agccgcctat cggaaccgcc tggtgttccg cgctttcggc gacaacatcc
     2701 tgggttttgc gcccgccctc agctatacgg aagccgagtt cgacctgatg ttcgagcgcc
     2761 ttgagaagac actcgacgac gtgctcgccg aacccgaagt ccgtgcagcg ctgaagctga
     2821 acaaggcctc gggcggagcc aaaaccggcg tcaaagtcga gatgaaagcc cacgtagctg
     2881 cgtgataaga tcaaatcagc aaggtcgaat gacaatgttg aaacgattcc acgcaactgg
     2941 agagacaacc tgacgatgag cagcgaaggc aagcttgacc gcatagatct gcgcatcctt
     3001 tcgcaattgc agaagaaagg ccgcatcacg aatgtcgagc tggccgacgc ggtcgggctc
     3061 tcgccgagcc catgcctgat ccgcgta
//
LOCUS       DATGBK010001500         1773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_41247, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001500 DATGBK010000000
VERSION     DATGBK010001500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41247"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..543
                     /locus_tag="VKJ77_20930"
     CDS             <1..543
                     /locus_tag="VKJ77_20930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011548950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HMC47796.1"
                     /translation="MEELTALWPMKRFPVLVDAGRTVVEASIIIEHLGLYHPGPVSLL
                     PEDARSAMEVRSMDRFFDNYISTPQQKIVGDCLRPQTERDPRGVADARTMLDTAYGWL
                     DGIMAEREWAAGDHFSLADCGAAPFLFYADWTHRIDASFPHVIAYRQRLLARPSFARA
                     VDEARPYRPFFPLGAPVDRD"
     gene            730..>1773
                     /locus_tag="VKJ77_20935"
     CDS             730..>1773
                     /locus_tag="VKJ77_20935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012339489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC47797.1"
                     /translation="MTGFGFGQRGRTLAAVGKIAEHAGKLGIEICDVSGHVEEVAARA
                     TRQADLCHGLQRSAMSTMEGNQRIAAAARQMRLVADQAASDVGQSQETVRVSLADIHS
                     LVDSVSVMAAEIETLRGSLSDVSKISEEISIIARQTNLLALNAAIEAARAGEFGKSFA
                     VVAAEVKALSAKTAQATSEIGTTLTRLSGQADLLMAEGSASAIRAQRVKEGTHAIGEV
                     VAATGKAITELSVEAEQIASQTEAIDQQCSGLASQVSEMVGGVEQSSGSFTKARDQLS
                     KLLGVSETLIELTAEAGIETPDTRFIDAVMTAAQKIGRAFEHAISRGEISAADLFDHA
                     YNPIAGTNPEQFTT"
BASE COUNT          351 a          506 c          587 g          329 t
ORIGIN      
        1 atggaggaac tgaccgcgct ctggccaatg aagcgcttcc ccgtgctcgt ggatgccggt
       61 cgcaccgtgg tcgaggccag cattatcatc gagcacctgg ggctgtatca tccgggcccc
      121 gtgtcgctgc tgcctgaaga tgcccgcagc gcgatggaag tgcgcagcat ggatcgtttc
      181 ttcgacaact acatctcgac tccgcagcag aagatcgtag gtgactgcct gcggccgcaa
      241 acggaacggg acccaagagg cgttgccgat gcacgcacga tgctggacac cgcttacggc
      301 tggctcgatg gaatcatggc cgagcgcgaa tgggccgctg gcgatcactt cagcctggcc
      361 gattgcggcg ccgcgccgtt cctgttttat gccgactgga cgcatcgcat tgacgcgtca
      421 ttccctcacg tgattgcgta ccggcaacga ctgctggcgc gtccgtcatt cgcgcgcgcg
      481 gttgatgagg cgcggccata tcggccgttt tttccgttgg gagcgcctgt cgatcgcgat
      541 tgaatcgcgc ctgccacatg ccgcccttga cgcagggcaa acccgatgta tcgcatccat
      601 tgcctcgcgc ccctttagtt tttcctgcaa tcggacgtta tacgggagga cgtcacgcgg
      661 aattcgatga acccggcatg tcgagacgca aggggaattc cgcaaaaatt aaagcaccgg
      721 gggcaaggga tgacgggttt cggattcggg caacgcgggc gcacgctggc ggcggtcggc
      781 aagatcgccg aacatgctgg caagctgggt atcgagattt gcgatgtatc ggggcacgtc
      841 gaggaagtgg cggcccgcgc gacgcgtcag gcagatctgt gccatggctt gcagcgctcc
      901 gccatgtcga ccatggaagg caaccagcgg attgccgcgg cggcgcgtca gatgcgtctt
      961 gtggcagatc aggccgcgtc cgacgtcggc cagtcccagg agacggtcag ggtgtcactg
     1021 gcagacatcc atagtctggt ggacagcgtc tcggtgatgg cggcagagat tgagaccttg
     1081 cgagggtcat tgagcgacgt cagcaagatc tccgaagaaa tttcgatcat cgcgcgccag
     1141 actaatctat tggccttgaa tgccgcgata gaagcggccc gcgcggggga gttcggcaag
     1201 agctttgccg tggtcgctgc tgaagtgaag gcgttgtccg ccaagaccgc gcaggccacg
     1261 tcggagatcg ggacaacact caccaggctg tcgggtcagg ccgacctgct gatggccgaa
     1321 gggtccgcca gcgccatacg tgcgcaacga gtcaaagagg gcacgcacgc gatcggcgag
     1381 gtcgtggcgg cgacggggaa ggcgatcacc gagttgagtg ttgaagcaga gcaaattgct
     1441 tcgcaaaccg aagcgatcga tcaacaatgc agcgggcttg cgtctcaggt ctccgagatg
     1501 gtcggaggcg tcgagcagtc gagcggcagc ttcacgaagg cgcgcgacca gctgagcaag
     1561 ttgttgggcg tgtctgaaac cttgattgag ctgacggcgg aagcggggat agagacaccc
     1621 gacacgcggt ttatagacgc ggtcatgacc gccgcgcaga agatcggccg ggcattcgag
     1681 catgccattt cgcgtggtga gatttcggct gcggaccttt tcgatcatgc ctataacccg
     1741 attgccggta ccaatcccga gcagttcacg acc
//
LOCUS       DATGBK010001501         1619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_86855, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001501 DATGBK010000000
VERSION     DATGBK010001501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86855"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1619)
                     /gene="thrS"
                     /locus_tag="VKJ77_20940"
     CDS             complement(<1..>1619)
                     /gene="thrS"
                     /locus_tag="VKJ77_20940"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010092560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HMC47798.1"
                     /translation="LDGELVDTSTLIDHDASLAIVTEKDADGLDIIRHSTAHLLAYAV
                     KDLYPDAQVTIGPVIENGFYYDFAYSRPFTPEDLEKIEKRMAEIAKKDEPVSRRVVTR
                     GEAVDYFKSIGEKYKAEIIESIPSTDDIKLYSHGSFTDLCRGPHVPSTGKLKVFKLMK
                     VAGAYWRGDSKNEQLQRIYGTAWTKKEDQEAYLHMLEEAEKRDHRKLAKQLDLFHLQE
                     EAPGMVFWHPKGWAIWQQVEQYIRHRLNEVGYLEIKTPMIMDRSLWEASGHWQNYREN
                     MFTTESEKRDYAIKPMNCPGHVQVFNHGLRSYRDLPLRYAEFGSCHRNEASGALHGLM
                     RVRGFVQDDAHIFCTEDQFIEESIAFNTLAMSIYKDFGFDHIDIKLSLRPDARAGNDE
                     TWDRSEQGLRDALTACGLTWEELPGEGAFYGPKIEYHIKDALGRSWQCGTLQLDMVLP
                     ERLGAEYVAEDNSRKRPVMLHRAIVGSMERFLGILIEHHAGAMPSWLAPVQAVVLNIA
                     ESQAEYALQVTQSLQKQGLRVESDLRNEKIS"
BASE COUNT          310 a          491 c          451 g          367 t
ORIGIN      
        1 tagctaatct tctcgttgcg caaatcgctc tctactctaa gcccttgttt ttgcaacgat
       61 tgggtcactt gcagtgcata ttcagcttgg ctttcagcga tattcaggac cacagcctgc
      121 accggcgcga gccaggacgg cattgcacca gcgtggtgct cgatcagaat accgagaaaa
      181 cgttccatgg aaccgacgat tgcacggtgc aacatcaccg ggcgcttgcg gctgttatct
      241 tccgctacgt attcggcgcc caggcgctcc ggcaggacca tgtcgagctg cagcgtaccg
      301 cattgccatg accggccgag cgcgtccttg atgtggtatt cgatcttcgg accatagaac
      361 gcaccctcgc ccggcaattc ttcccacgtg aggccgcatg ccgtcagcgc gtcgcgaaga
      421 ccttgctccg agcgatccca ggtttcgtcg ttgccggcac gggcgtcggg acgcagcgac
      481 agcttgatgt cgatgtgatc gaagccgaaa tccttgtaga tgctcatcgc gagcgtattg
      541 aacgcaatcg actcttcgat gaactggtct tccgtgcaga aaatgtgggc gtcgtcctgg
      601 acgaaaccac gcacgcgcat caacccgtgc aacgcgcccg acgcttcatt ccgatgacac
      661 gagccaaatt ccgcgtaacg cagcggcaga tcgcgatatg aacgcaaacc atggttgaac
      721 acctgcacgt ggccggggca gttcatcggc ttgatcgcgt aatcgcgctt ctccgactcc
      781 gtcgtgaaca tgttttcacg atagttctgc cagtgacccg acgcctccca cagcgagcgg
      841 tccatgatca tcggcgtctt gatttcaaga taaccaactt cgttcagccg atggcggatg
      901 tattgctcga cctgctgcca gatcgcccag cccttcgggt gccagaacac catgcccggc
      961 gcctcttcct gcagatggaa caggtcgagt tgcttggcga gcttgcggtg atcacgcttc
     1021 tccgcttcct ctagcatgtg cagatacgct tcctggtctt ccttcttcgt ccaggccgtg
     1081 ccgtagatac gctgcaactg ttcgttcttc gagtcgccgc gccagtaagc gcccgcaacc
     1141 ttcatcagct tgaagacctt cagcttgccc gtagacggca cgtgcgggcc gcggcaaaga
     1201 tccgtgaagc tgccgtgcga gtacagcttg atgtcgtcgg tagacgggat cgattcgatg
     1261 atctcggcct tgtacttttc gccgatgctc ttgaagtagt cgaccgcttc gccgcgcgtc
     1321 acaacgcggc gcgacaccgg ctcgtccttc ttcgcaattt cggccatgcg cttttcgatc
     1381 ttctcgagat cttccggcgt gaagggacgg ctgtacgcga aatcgtagta gaagccgttc
     1441 tcgatcacag gaccgattgt cacttgtgcg tccgggtaca gatccttgac ggcgtaggcg
     1501 agcaaatgcg ccgtggagtg gcgaataatg tcgagaccgt ctgcgtcctt ttcagtgacg
     1561 atggcgagcg acgcgtcgtg atcgatcagc gtggacgtat cgacgagctc gccgtcgag
//
LOCUS       DATGBK010001502         1684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_341579, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001502 DATGBK010000000
VERSION     DATGBK010001502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341579"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..299
                     /locus_tag="VKJ77_20945"
     CDS             <1..299
                     /locus_tag="VKJ77_20945"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC47799.1"
                     /translation="GASEHFYRDVLGFSAQRKGDNVVVVFGDVTLILEPAPPVERAKL
                     ALGFRIAAASLDELAARVRAGGGHILAGPAPREHAGTALLLMDPDHYQLEIFSE"
     gene            complement(289..822)
                     /locus_tag="VKJ77_20950"
     CDS             complement(289..822)
                     /locus_tag="VKJ77_20950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HMC47800.1"
                     /translation="MLIEYRGKRPKIAASAFIAPTAVLIGDVEIGEESSVWFGVVIRA
                     DNGPIRVGARTSIQDNSVLHVSEDHTTIVGDDCTVGHCAILEDCTIENGALVGSNAVV
                     LNGAVVGAQALIGAGAVVGANATIPSRVVAAGQPAVVKKQLVGEAVGWVEGAAKEYVH
                     LSRSYLEQGIGKPETTR"
     gene            879..1133
                     /locus_tag="VKJ77_20955"
     CDS             879..1133
                     /locus_tag="VKJ77_20955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47801.1"
                     /translation="MSEHRHKTPLRGTKVIPRPAPDNPEYRAVNYTYAGVEGHVHEVV
                     HIGGRDLAKVGFNDKKIVYYFLDDLEMDETARKRTFHDDP"
     gene            1196..1552
                     /locus_tag="VKJ77_20960"
     CDS             1196..1552
                     /locus_tag="VKJ77_20960"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin family copper-binding protein"
                     /protein_id="HMC47802.1"
                     /translation="MNTLRGALGALSILALAAGLGPSVARAAAPANAAVTVHIVNFSF
                     KPDHLTIPAGTTVTFVNDDNEPHTASAVNKSFDSEGLDLHQSFKHTFTKPGTIAYFCE
                     MHPNMRGWLIVTGDKK"
BASE COUNT          329 a          535 c          474 g          346 t
ORIGIN      
        1 ttggtgcctc cgaacacttc tatcgtgatg tgctgggttt ttcggcgcag cgtaaaggcg
       61 acaacgtcgt cgtggtattt ggtgatgtca cgctgatcct cgaaccggcg ccgccggtcg
      121 agcgcgccaa actggcactg ggctttcgta ttgcggccgc ctcgctcgat gagctagccg
      181 cgcgcgtaag agccggtggc ggacatattc tcgccggtcc agcgccgcgc gaacatgccg
      241 gcacggcgct gctgttaatg gatcccgatc attaccagct cgagattttt agcgagtagt
      301 ttcgggcttc ccgatcccct gttcgaggta cgaacgcgag aggtgaacgt actctttcgc
      361 ggcgccttcg acccacccga cggcttcgcc gactaactgc tttttcacca cagccggttg
      421 accggctgcg acaacgcgcg acggaatcgt cgcgttcgcg ccaaccacgg cgcccgcgcc
      481 gatgagtgct tgcgcaccga cgaccgcgcc gttgagcacg acggcattgc tgccgacgag
      541 cgcgccgttt tcgatcgtgc aatcttcaag aatcgcgcag tggccgaccg tgcaatcgtc
      601 gcccacaatc gtcgtgtgat cttcactgac atgcagcacc gaattgtctt gaattgacgt
      661 gcgcgcgcca acccgaatcg gtccgttatc cgcgcggata accacgccga accaaacgct
      721 ggattcttcg ccgatctcga catcaccgat cagcaccgcc gtcggcgcga taaaggcaga
      781 tgctgcgatt ttcggtcgtt ttccgcgata ttcgatgagc atgggtctcc ctcggcgaag
      841 tcgttgtgtc ccaaattgtc gctttaaacg gaggtccctt gagcgaacat cgacacaaga
      901 ccccgctacg cggcacgaaa gtgattccgc gcccggcacc cgataatccg gaatatcgcg
      961 ccgtgaacta cacctatgcc ggcgttgaag gccacgtgca cgaggtcgtt catatcggcg
     1021 gccgagatct ggcgaaggtc ggctttaacg acaagaagat cgtctattat tttctcgacg
     1081 atctggagat ggacgaaacc gcgcgaaaac gcacgtttca tgacgacccc tagcgggtcg
     1141 tctaccaagt tgtcccggcc ctcatccgat ccgcggagtt gggcgtacca gaggtatgaa
     1201 caccttacgc ggcgccctcg gcgccctttc gatcctggcg ttggcagcag gactcggtcc
     1261 gtccgtggct cgcgctgcgg ccccggccaa cgccgccgtg accgttcaca ttgtgaactt
     1321 ctcatttaag cccgaccacc tgacgatccc ggccggtacc accgtgacct tcgtgaacga
     1381 cgacaacgag ccgcatacgg cgtccgctgt caacaagtcg ttcgattccg aaggcctcga
     1441 cctgcaccaa tcgtttaagc ataccttcac gaagcccgga acgatcgcat acttttgcga
     1501 aatgcacccg aatatgcggg gctggctcat cgtcactgga gacaagaaat gaagcgtcaa
     1561 agctttctcg agcacgtcgg ttggaccggc gccggtcttg cattcacgat cggcagcatg
     1621 ggcgtcctcg agcccgttgc cgccggcgcg caaacgaacg ggttctcgtt cgttcaaatc
     1681 agcg
//
LOCUS       DATGBK010001503         2166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_64205, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001503 DATGBK010000000
VERSION     DATGBK010001503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64205"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..922
                     /locus_tag="VKJ77_20965"
     CDS             92..922
                     /locus_tag="VKJ77_20965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011301150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-5-aminohexanoate cleavage protein"
                     /protein_id="HMC47803.1"
                     /translation="MTDPCIISVAITGSVPRKKDNPAVPISITEQVESTHAAYEAGAS
                     LVHLHVRDEQENSSSDRSRFEALQDGIRQHCPDIIIQFSTGGRGRSFEERGAMLDLRP
                     DMASLATGSVNFPTTVYENPPDFVRSLAKSMLDNGVKPEIEIFDLAMLYSTVDLVGQG
                     LLASPVHVQFVMGVKNALPAKREILEFEVERLRAELPDATWTAAGIGRHQLEVNHWTL
                     ELGGHCRTGLEDNIRWDKDTLATSNAQLVGRVAALCGEYGRPVATAAQARELLHLPAL
                     "
     gene            1009..>2166
                     /locus_tag="VKJ77_20970"
     CDS             1009..>2166
                     /locus_tag="VKJ77_20970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HMC47804.1"
                     /translation="MLRSIATVSVSGTLVEKLKAISRAGFDGVEIFENDLLYFDGSPA
                     DVRRICADLGLQIMLFQPFRDFEGVSPERLVRNLERARRKFELMHELGTDRVLVCSNA
                     SADSIGGDALLVDQLGQFADLARSEGVMAGYEALAWGRHVNSYKHAWRLVDTLDHPNL
                     GLILDSFHTLSIGDSVDEIARIPADRITFVQIADAPKMAMDVLEWSRHYRCFPGQGDL
                     DVAGFTRQVLASGYSGPLSLEIFNDGFRAAPNAATAVDGYRSLLFLEEQCAGALNATS
                     HETLFHPPAAPAHTGFQFLEFAVDPAGGPTLAQWLERLGFRAAGRHRSKDVTLYAQGD
                     ACILLNGETDSFASAFHQAHGLSVCASAYRVDNAAQAFERAAAFGYAPFSGK"
BASE COUNT          392 a          645 c          677 g          452 t
ORIGIN      
        1 gtgcttgttg cgggcggcat gaaacggact tgagagcagg gctgcccggt tagcggcatg
       61 gactcacacc tcattcaatg gaaggtaaat catgactgac ccctgcatca tctcggttgc
      121 gatcacgggc tccgtgccgc gcaagaagga caatccggcg gtacccatct cgatcactga
      181 gcaggttgag agcacccacg ccgcgtacga agcgggcgcg tcgctcgtgc atctgcatgt
      241 gcgcgatgag caggagaatt ccagctcgga ccgctcacgt ttcgaggcgc ttcaggacgg
      301 catccggcag cattgcccgg acatcatcat ccagttctcc acaggtgggc gcggacgttc
      361 tttcgaagag cgcggcgcga tgctcgacct gcgcccggac atggcttcgc tcgccacggg
      421 gtcggtcaac ttcccgacga cagtctacga aaacccgcct gacttcgtgc gctcgctcgc
      481 gaagtcgatg ctcgataacg gcgtcaaacc cgagatagaa atcttcgatc tggccatgct
      541 ttacagcacc gtcgatctgg tcgggcaggg gctgctggcg tctccggttc atgtccagtt
      601 cgtgatgggc gtaaagaacg cgttgccggc caagcgcgaa atcctcgagt tcgaagtcga
      661 gcggctgcgt gcagagttac ccgatgcaac ctggacggct gcgggcatcg gccggcatca
      721 gcttgaggtg aatcactgga cgcttgaact aggcggtcat tgccgcacgg gtcttgaaga
      781 caacattcgc tgggacaagg acacccttgc cacgagcaac gcgcaactgg tgggccgcgt
      841 ggctgcgttg tgtggcgagt atgggcggcc ggttgcaacc gcggcgcagg cccgggaact
      901 gctgcatttg cctgcgcttt agtctttcgc cggcgaccga tatagctaca ggaatacggc
      961 ggtgccccgc ataccggcgg tggcctgcct gttgaaagag aacttacgat gctacgttca
     1021 attgccaccg tctcagtcag cggcacgctg gtcgagaagc tcaaggctat cagccgcgcc
     1081 gggttcgatg gcgtcgagat tttcgaaaat gacttgctgt acttcgatgg ctcacccgcc
     1141 gacgtcaggc gcatctgcgc cgacctcggg ctccagatca tgctgttcca gcccttccgc
     1201 gatttcgagg gcgtctcacc ggaacggctg gttcgcaacc ttgaacgcgc gcggcgcaag
     1261 ttcgaactga tgcatgaact cggcacggat cgcgtgctgg tgtgcagcaa tgcatcggcg
     1321 gattcaatcg gcggcgatgc attgctcgtc gatcagctcg gtcagttcgc cgacctcgcg
     1381 cgttcggaag gcgtgatggc gggttatgaa gcgctcgcct gggggcggca cgtcaattcg
     1441 tacaaacatg catggcggct ggtcgacacg cttgatcatc cgaaccttgg cttgatcctc
     1501 gatagcttcc atacgctttc catcggcgat tcagtcgatg aaatcgctcg cattccagcg
     1561 gaccggatca cattcgtgca gatcgcggac gcgccgaaga tggcaatgga tgtgcttgaa
     1621 tggagccggc attaccgttg tttcccgggg caaggcgacc tcgacgtggc tggctttacg
     1681 cgtcaggtgc tggcgtcggg atactccgga cccttgtcgc tggagatatt caacgatggc
     1741 tttcgcgcag cgcccaacgc ggcgacggcg gtcgacggtt atcgctcgct gctgtttttg
     1801 gaggagcaat gcgcgggcgc tttaaatgcg acctcgcatg agacgttgtt ccatccgccc
     1861 gccgcgcccg cgcacaccgg ctttcagttc ctcgaattcg ccgtcgatcc tgccggtggt
     1921 ccaacgcttg cgcaatggct cgaacgcctg ggctttcgcg cggctggccg gcatcgttcc
     1981 aaggatgtca cgctgtacgc acagggcgac gcatgcattc tcctgaacgg tgaaacagat
     2041 tccttcgcga gcgcgtttca tcaggcgcat ggcttgtcgg tgtgcgcctc ggcgtatcgc
     2101 gtcgataatg ctgcgcaagc gttcgagcgt gcagccgcgt tcggctatgc gcctttttcg
     2161 ggcaag
//
LOCUS       DATGBK010001504         1544 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_272713, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001504 DATGBK010000000
VERSION     DATGBK010001504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272713"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..393
                     /locus_tag="VKJ77_20975"
                     /pseudo
     CDS             1..393
                     /locus_tag="VKJ77_20975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069133.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(454..>1544)
                     /locus_tag="VKJ77_20980"
     CDS             complement(454..>1544)
                     /locus_tag="VKJ77_20980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017332549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA-guided endonuclease TnpB family protein"
                     /protein_id="HMC47805.1"
                     /translation="EQKVILARTFGCARFAYNHMLRQRTEAWFERQERMGYHETSAAL
                     TALKKTEEYAWLNEVSSVPVQQALRHLQTAFTHFFAKRAKYPNFRRKDGPQSAEYTTS
                     AFRWDGAALKLAKMHEPLAIRWSRAIPKGAKPTTVTVSRDTAGRHHVSMLCDDVVTAR
                     PVAAGKIGIDLGLTHFAILSNGEKIDAPNVFRKNEAKLAKLSRRLAKKQKGSANRKKA
                     KLKVARMHARTADSRRDFLHKLSTRLINENQVIAIESLSVKNMQKNRSLSKSISDAGW
                     SEFTRQLEYKARWYGRAVIGIDRWYPSSKRCSDCGHTVAKMALKVRAWTCPECGSIHD
                     RDINAARNVLAAGLAVSAHGESISPMSL"
BASE COUNT          272 a          475 c          448 g          349 t
ORIGIN      
        1 gatcggcatc actttcacgc cgatcaccgc gcgcaccgtg cgcgcggccg tgttcgccga
       61 gcgcaatctg gactacgtgc tggcggcgca attgcgcggc gaaaacgcgt tttacatcat
      121 gttcgcggag atcctgccga acgtgctgca gccgatcatc gtggaagcaa cggtgcgact
      181 cggttacgcc attttcgcgg tcgccacgct gtcgttcctg gcttcggcat tcagccgccg
      241 tcggctgact ggggcctcgc tctctctgag tgctacacgc tgatggcggg cggcgcatgg
      301 tggaccgtcg tgttcgacgc cgccgcaatc gcttcgctgg tagtgggggt gaacctcgtc
      361 gccgatggta tccagggagt gctcgatcgt tgacattctc ccgtacctga aggaagggaa
      421 ttcccacttc aaagaatgca acccaacatc atctcaaaga gacatgggac ttatgctttc
      481 tccatgggct gacaccgcca gcccggcggc caaaacatta cgcgcagcgt tgatgtcgcg
      541 atcgtggatc gacccgcatt ccgggcatgt ccatgcacgt accttcaacg ccattttggc
      601 gacggtatgc ccgcagtcac tgcatcgctt gctggatgga taccagcggt cgataccgat
      661 caccgcgcgt ccataccacc gcgctttgta ctccagttgc cgcgtaaact cggaccagcc
      721 tgcatcgctg atcgacttcg acaggctacg gttcttctgc atgttcttga cggacaagct
      781 ttcgatggcg atcacttggt tttcgttgat caaccgggtc gaaagtttgt gcaggaagtc
      841 ccttcgggag tctgccgtcc tggcatgcat gcgtgcgact ttgagctttg ccttcttacg
      901 gttggcggag cccttttgct tcttcgcgag gcgccgcgac aactttgcga gcttcgcctc
      961 gttcttgcgg aacacatttg gcgcgtcaat cttctcgccg ttcgaaagaa tggcgaaatg
     1021 ggtaagcccc aagtcgatgc cgatctttcc agcagcgacc gggcgcgcgg tcaccacgtc
     1081 gtcgcagagc attgacacat ggtgccggcc cgccgtgtcc cttgacacgg tgaccgtcgt
     1141 gggcttcgcg cctttgggga tcgcgcgtga ccagcggatc gcgagcggct catgcatctt
     1201 cgccagcttg agcgccgcac cgtcccacct gaaagcactc gtggtgtatt cggccgactg
     1261 cgggccatcc ttgcgcctga aatttgggta cttcgcccgc ttggcgaaaa agtgggtgaa
     1321 cgcagtttgc aaatgccgaa gcgcctgctg tacgggaacc gaactcactt cgttcagcca
     1381 ggcgtactct tcggtctttt tgagcgccgt cagcgcagcg gaggtctcgt gataacccat
     1441 gcgctcctgc cgctcaaacc acgcctctgt gcgttgccgg agcatgtggt tataagcgaa
     1501 gcgcgcgcat ccaaacgtgc gcgcaagaat cactttctgc tcgg
//
LOCUS       DATGBK010001505         1655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_203046, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001505 DATGBK010000000
VERSION     DATGBK010001505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203046"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..1181
                     /locus_tag="VKJ77_20985"
     CDS             159..1181
                     /locus_tag="VKJ77_20985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC47806.1"
                     /translation="MEYRNLGSSGLRISRLCLGAMTFGAGTGIWGEIAGLERAEATRL
                     VAMAVERGINLIDTADAYSQGQSEAVVGQVLADLGLDESRMLVATKVRLRTGVGHNDV
                     GLGRSHIMRSVETSLRRIGRDHIDLFQLHDRDELVPLEETLRALDDLVSQGKVRHIGV
                     CNFSAGDLERAQGITARTHWARVVSNQVHYALTSRDVEHEIAPVAKANDVALLVWSPL
                     AGGYLSGKYTQGSSGETGRRSKLNFPPIDPAKADPIVRVLQDIATELNASPAQVALAW
                     ILARREVCSVIVGARTPDQLSANLDAQKIALNAAQTERLNQVSQPHLPYPYWMQQFHD
                     KDRVVV"
     gene            complement(1332..>1655)
                     /locus_tag="VKJ77_20990"
     CDS             complement(1332..>1655)
                     /locus_tag="VKJ77_20990"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HMC47807.1"
                     /translation="IDQRVSKAMSAMHAEPGRDWNVTELAKLSNLSRSAFADRYQRIV
                     GQAPMAYLAAWRLDCAAELLRYGRAPISEVARRVGYTSEAAFSRAFKSRFAMSPLQWR
                     RADAV"
BASE COUNT          342 a          481 c          510 g          322 t
ORIGIN      
        1 ggcgaagtgg aactggaaac cgttctgcga gacctcatct tgcaggcaag caggcacgcg
       61 gactagcgcg agtgcacccg gcgacgcgtg cagaaagtcg cttcaccgag tgctttccgt
      121 tcatcgttca tcaatagatt catatcaagg agttcgctat ggaatacagg aacctcggca
      181 gctcagggct gcgcatttcc cgtctttgtc ttggcgccat gacctttggt gccggtaccg
      241 gaatctgggg cgaaattgct ggcctcgagc gtgcggaggc cacacggctt gtcgcgatgg
      301 ccgtcgagcg cgggatcaac ctgatcgata cggctgacgc ctattcgcaa gggcagtctg
      361 aagcggtcgt cggtcaggtg ctggccgacc ttggactcga cgagtcgcgc atgctggtcg
      421 cgaccaaagt tcggctgcgc acaggtgtcg gtcacaacga tgtcgggctc ggccgttcgc
      481 acatcatgcg gtcggtggaa acgagtcttc ggcgtatcgg ccgggatcat atcgacctgt
      541 ttcagttgca cgaccgcgat gaacttgttc cgctggaaga aacgcttcgt gcgctcgacg
      601 acctcgtgag ccagggcaag gtgcggcaca tcggtgtctg caacttcagc gcgggtgacc
      661 tggagcgtgc acagggaatt accgcccgca cgcactgggc tcgcgttgtc agcaatcagg
      721 ttcactatgc gctgacgagc cgcgacgtcg agcatgagat cgcgcccgtg gcaaaggcga
      781 atgatgttgc gcttctggtg tggagcccac tcgcgggcgg gtacctgagc ggtaagtaca
      841 cgcagggaag cagcggtgaa accgggcgtc gatccaagct gaattttccg ccgatcgatc
      901 ccgcgaaggc ggatcccatc gtgcgcgtat tgcaggacat tgctacggaa ttgaacgcgt
      961 cgccggctca ggttgcattg gcctggatcc tggcgcgccg tgaggtctgt tccgtcatcg
     1021 taggcgcgcg cacgcccgac caactgagcg ctaacctcga cgctcagaaa atcgcgttga
     1081 acgcggcgca gaccgaacgt ctgaatcagg tctcgcagcc gcacctgccc tatccttact
     1141 ggatgcagca gttccacgac aaggatcggg tagtggtctg atcgcttgag cggcggcaat
     1201 ccctctactc gatcgggacg acgcatcccc gctggcgatc cgccagcggg gatgcatccg
     1261 attagaacgt aatcctatgt attgaaaatg cctatctaac tcagacctgc cctgacgcga
     1321 ttgaagccca atcagacggc gtcagcccga cgccattgaa gaggcgacat ggcgaaccga
     1381 cttttaaaag cgcgactgaa cgcagcctca gatgtgtacc cgacccgccg cgcgacttca
     1441 gagatcggag cgcgtccgta gcgcaatagc tctgcggcgc aatcaaggcg ccaggcggcc
     1501 aaataagcca tgggagcttg accgacgata cgttgataac gatctgcaaa cgcagaacga
     1561 gacagatttg acagtttggc gagttccgtg acgttccagt cgcggccagg ttcggcgtgc
     1621 attgccgaca tcgccttgct gacacgctga tcaat
//
LOCUS       DATGBK010001506         1539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_17278, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001506 DATGBK010000000
VERSION     DATGBK010001506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17278"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..>1539
                     /locus_tag="VKJ77_20995"
     CDS             99..>1539
                     /locus_tag="VKJ77_20995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HMC47808.1"
                     /translation="MSSESMPASAVPAAPLNRPMLTISIMLATLIQTLDSTIANVALP
                     HMQGTLSASQDEITWVLTSYIVAAAIATPLTGWLSDRLSTKRLLIISIGGFTVASALC
                     GLSESLAQIVASRLLQGIFGASLVPLSQSILLDINPREKQGQAMAVWGMGVMVGPILG
                     PTLGGWLTDSYNWRWVFFINVPIGAFALFGVVTFLPARAAKLGVKFDAFGFATLGLAI
                     GALQAMLDRGEQLDWFGSLEIRIEAILAVLGFIFFLAHTATAGKRSFFKYELLKDRNF
                     ATGVFFIFMIGAVMYATRALLPPMLQNLMNYPVATTGLVTAPSGAGTMVAMLVAGRLL
                     RRIDARLLLLAGFLISAFALWQMMQYTLVLSVSDIVWPGVIQGFGLGFVFVPLSALTF
                     STLTPELRADGTATYSLMRNIGSSIGISIVQTMMTRGTQVAHADLAANVNVFNPSMQP
                     MLESGSQISLALMDQSINQQAQMIAYLNDF"
BASE COUNT          265 a          450 c          470 g          354 t
ORIGIN      
        1 tttttgacac cttgttccaa tcatcagcct gtttataata agcatgctta ttaattgagt
       61 aagagagtaa gcaatctgct aaccgaatcg ccgcctgaat gtcctctgaa tcaatgccgg
      121 caagcgcggt gccggccgcg ccgctcaatc ggcccatgct cacgatctcg atcatgctcg
      181 caacgctgat ccagacactc gacagcacga tcgccaatgt cgcgctgccg cacatgcagg
      241 gcacgctgtc ggcgtcgcag gacgagatca cgtgggtgct gacgtcgtac attgtcgcgg
      301 ctgcgatcgc cacgccgctt acgggctggt tatctgaccg gctgagcacg aagcgtctgc
      361 tgatcatttc tattggcggc ttcacggttg cgtcggcgct atgcgggcta tcggagagcc
      421 tcgcgcagat tgtcgcgtca cgattgctgc aggggatttt cggagcctcg ctcgtgccgc
      481 tctcgcaatc gatcctcctc gacatcaatc cgcgcgaaaa gcagggccag gcgatggccg
      541 tctggggcat gggcgtgatg gtcgggccga ttctcgggcc gacactcggc ggctggctca
      601 ctgacagcta caactggcgc tgggtatttt tcatcaacgt gccgatcggc gcgtttgcgc
      661 tttttggcgt ggtgacattc ctgccggcgc gagcggcgaa gctcggggtg aaattcgacg
      721 cgttcggctt cgccacgctg ggtctggcga tcggcgcgtt gcaggccatg ctcgatcgcg
      781 gcgagcagct cgactggttc ggctcgctcg aaatccgcat cgaagccatt ctggcggtgc
      841 tgggctttat cttttttctc gcccacaccg cgaccgccgg caagcgctca ttcttcaagt
      901 acgaactgtt gaaggaccgc aatttcgcga ccggcgtgtt ttttatcttc atgattggcg
      961 cggtgatgta cgcgacccgt gcgttgttgc cgccgatgct gcagaacctg atgaactatc
     1021 ccgttgcgac gaccggtctg gtcacggcgc ctagcggcgc ggggacgatg gtcgccatgc
     1081 tggttgccgg gcggctgtta cgacgcatcg acgcgcgtct gttgttgctc gcgggctttt
     1141 tgatttcggc gttcgcgctc tggcagatga tgcaatacac gctcgtgctg tcggtgtcgg
     1201 acattgtgtg gcccggcgtg atccagggtt ttggcctggg tttcgtattt gtgccgctca
     1261 gtgcgctgac gttttccacg ctgacgcccg aactacgcgc cgacggcacc gcgacctaca
     1321 gcctgatgcg caacattgga agcagtatcg gcatctcgat cgtgcagacc atgatgacgc
     1381 gcggcacgca ggtcgcgcac gccgatcttg cggcgaatgt gaacgtgttc aatccgtcga
     1441 tgcaacccat gctcgagagt ggatcgcaga taagtctcgc gctgatggat cagtcgatca
     1501 atcagcaggc gcagatgatc gcgtacctga acgacttca
//
LOCUS       DATGBK010001507         2677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_295362, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001507 DATGBK010000000
VERSION     DATGBK010001507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2677
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295362"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1210
                     /gene="purH"
                     /locus_tag="VKJ77_21000"
     CDS             <1..1210
                     /gene="purH"
                     /locus_tag="VKJ77_21000"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011869829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HMC47809.1"
                     /translation="IENIDIGGPTMLRSAAKNHRDVTVIVDPSDYAIVLDEMRSAKNT
                     VSYATNFKLATKVFAHTAQYDGAITNYLTSLTDELQHKSRNTYPSTFNLAFTKVQDLR
                     YGENPHQSAAFYRDLTTPAGALANYEQLQGKELSYNNIADSDAAWECVKTFDAPTCVI
                     IKHANPCGVAIGADAHEAYSKALKTDPTSAFGGIIAFNREVDETTAQAVAKQFVEVLM
                     APSFSDAAKQIFAAKQNVRLLKLDLGDGHNAFDLKRVGGGLLVQSLDSKNVQPHELRV
                     VTKRHPTPKEMDDLLFAWRVAKYVKSNAIVFCGGGMTIGVGAGQMSRVDSARIASIKA
                     QNAGLSLAGSAVASDAFFPFRDGLDVVVNAGATAVIQPGGSMRDDEVIAAADEHNIAM
                     VLTGTRHFRH"
     gene            1328..1870
                     /gene="ruvC"
                     /locus_tag="VKJ77_21005"
     CDS             1328..1870
                     /gene="ruvC"
                     /locus_tag="VKJ77_21005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HMC47810.1"
                     /translation="MRILGIDPGLRVTGFGVIDKTGQTLTYVTSGVIKTADADLPSRL
                     QTIFEGISTLVRQHAPDQSAIEKVFVNVNPQSTLLLGQARGAAICGLVASGVPVAEYT
                     ALQLKQAVVGYGRATKEQMQQMVVRLLALTGVPGTDAADALGMAICHAHAGGAMTALG
                     EIAPSLAKKGLRVRRGRLVG"
     gene            1892..2473
                     /gene="ruvA"
                     /locus_tag="VKJ77_21010"
     CDS             1892..2473
                     /gene="ruvA"
                     /locus_tag="VKJ77_21010"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HMC47811.1"
                     /translation="MIGRIAGVLLEKNPPYLLVDCGGVGYEIAVPMSTFYNLPNSGEK
                     IVLLTQLIVREDAHLLYGFGTQQERTTFRELLKISGIGARMALAVLSGMSVQELALAV
                     TMQDAARLTRTPGIGKKTAERLLLELKGKLGADLGTAAGTVSGPDHASDILNALLALG
                     YSEKEALMSVKNVPAGTGVSEGIKLALKALSKS"
     gene            2562..>2677
                     /locus_tag="VKJ77_21015"
     CDS             2562..>2677
                     /locus_tag="VKJ77_21015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HMC47812.1"
                     /translation="MIETDKLAAERIISATPVSPNEEVFERALRPRDLEEYVG"
BASE COUNT          550 a          802 c          824 g          501 t
ORIGIN      
        1 gatcgaaaat atcgatattg gcggcccgac catgctgcgt tcggcggcga agaatcatcg
       61 cgacgtaacg gtgatcgttg atccctcgga ttacgcgatc gtcctcgacg aaatgcgctc
      121 ggctaaaaac accgtcagct acgcgacgaa cttcaagctc gccactaaag tgtttgcgca
      181 taccgctcaa tacgacggtg cgatcacaaa ttacctgaca agcctgaccg acgagttgca
      241 gcacaagagc cgcaacacct atccgtcgac gttcaacctc gcgtttacga aggtgcagga
      301 tctgcgttac ggcgagaacc cgcatcaaag cgctgcgttc tatcgtgatc tcaccacgcc
      361 ggccggcgcg ctcgctaact acgagcaatt gcagggcaag gaactgtcgt acaacaacat
      421 tgcggactcc gacgctgcgt gggaatgcgt aaagaccttc gacgcaccga cctgtgtgat
      481 catcaagcac gcgaatccgt gcggcgtggc gatcggcgcg gacgcgcacg aagcgtattc
      541 gaaggcgctc aagaccgatc ccacttccgc gttcggcggc atcatcgcgt tcaatcgtga
      601 agtggatgag acaacggcgc aggctgttgc gaaacaattc gtggaagtgc tgatggcgcc
      661 ttcgttcagc gatgcggcca agcagatctt cgcggcgaag cagaacgttc gcctgctgaa
      721 gctcgatctc ggcgacggtc acaacgcgtt cgacctgaag cgcgtgggcg gcgggttgct
      781 cgtccaatcg ctggattcga agaacgtcca gccgcatgaa ttgcgcgtgg tcacgaagcg
      841 tcacccgacg ccgaaggaaa tggacgacct gctgttcgcg tggcgcgtcg cgaagtacgt
      901 gaagtcgaac gccattgtgt tctgcggcgg cggcatgact atcggtgtag gcgcgggcca
      961 gatgagccgc gtggattcgg cgcgcattgc cagcatcaag gcgcagaacg cgggcttgtc
     1021 gctggccgga tcggctgtgg cgtcggacgc gtttttcccg ttccgcgatg gcctcgacgt
     1081 cgtggtcaac gctggcgcga ccgccgtcat ccagccaggt ggttccatgc gcgatgacga
     1141 agtgatcgcc gcggcagacg agcacaacat tgcgatggtg ttgaccggaa cgcgtcactt
     1201 ccgccactaa gcacgtcact gagcacgctt cacctttaga aagcccggtg gccggcaggc
     1261 gcaccgggct ttttactttt tgcgccgcgc tgttagtatc gcaagcacta cgttccaacg
     1321 gcactccatg agaattctcg gtattgatcc gggcctgcgc gtgacggggt tcggcgtcat
     1381 cgacaagacc ggtcaaacgc tgacctatgt gaccagtggc gtcatcaaga ccgccgacgc
     1441 agatttgccg tcgcgtctcc agacgatctt cgaaggtatc tcgacgcttg tccggcaaca
     1501 tgcgcccgac cagtccgcga tcgaaaaagt gttcgtcaac gttaatccgc agtcgacgct
     1561 gctgcttggc caggcgcgcg gcgcagcaat ttgtggcctg gtcgcgagcg gcgtgccggt
     1621 cgccgaatac acggcgttgc agttgaagca ggccgttgtg ggctatggcc gcgcaacgaa
     1681 agaacaaatg cagcagatgg tggttcgatt gctcgcgctc accggagtgc cgggcaccga
     1741 cgccgcggat gcgctcggca tggccatctg ccacgcgcac gccggtggcg cgatgacggc
     1801 actcggcgag atcgcgccat cgctggctaa aaagggcctg cgcgtacggc gcggccgtct
     1861 tgtcggctaa ctccactaca agttcctcac catgattggt cgtattgcag gcgttttgct
     1921 ggaaaaaaat ccgccgtact tgctcgttga ttgcggcggc gtaggctacg aaatcgccgt
     1981 acccatgagc accttctaca acctgccgaa cagcggtgaa aagatcgtgt tgctgaccca
     2041 gttgatcgtt cgtgaagacg cgcatttgct gtacggcttc ggcacgcaac aggagcgtac
     2101 gaccttccgc gaactgctca agatcagcgg gatcggggcg cgcatggcgc tcgccgtgct
     2161 gtccggcatg agcgtccagg aactcgccct ggctgtgacg atgcaggacg ccgcgcgcct
     2221 gacacgcacg cccggtatcg gcaagaagac ggccgagcgc ctgttgctcg aactgaaggg
     2281 caagcttggc gcggatcttg gcacggcagc aggcacggtg agcggccccg accacgcgag
     2341 cgatatcctg aatgcattgc tggcattggg ttactccgaa aaagaagcgc ttatgtcggt
     2401 caagaatgtt ccggccggca cgggcgtttc ggaaggcatc aagctggccc tgaaagcgct
     2461 atccaagagc tagtcaggcc agtctcccac gcagttgatc cggccaacag tcggccgatc
     2521 ggccagcttt cggcgtgcga gccacgcggt acaatcgacg catgatagaa accgacaaac
     2581 tcgccgccga acgcatcatt tcggctactc ccgtctcgcc gaacgaggaa gtgttcgagc
     2641 gcgcgctgcg gccgcgcgat ctcgaggaat acgtcgg
//
LOCUS       DATGBK010001508         2829 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_64237, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001508 DATGBK010000000
VERSION     DATGBK010001508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2829
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64237"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..169)
                     /locus_tag="VKJ77_21020"
     CDS             complement(<1..169)
                     /locus_tag="VKJ77_21020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004531983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HMC47813.1"
                     /translation="MGKVYLIGAGPGAADLITVRGARLLSQANVVLHDALIEPAMLDY
                     APEARKIAVGKR"
     gene            complement(179..1504)
                     /locus_tag="VKJ77_21025"
     CDS             complement(179..1504)
                     /locus_tag="VKJ77_21025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HMC47814.1"
                     /translation="MMSIHQPEDLGVLRFITAGSVDDGKSTLIGRLLFDSKAVLSDQL
                     SALSRAKNKRTVGDEIDLSLLTDGLEAEREQGITIDVAYRYFATAKRKFIIADTPGHE
                     QYTRNMVTGASTAHAAIILVDATRVTLQDGVAQLLPQTVRHSAIVKLLGLQHVIVAIN
                     KMDLIEFSETRFNEIRDAYVELARRLGIADVRFVPVSALKGDNIVTASERMPWYAGEP
                     LLDLLEALPVAQPVDQALRFPVQWVARQDGSQADDFRGYMGRVESGEVKLGDTITVLP
                     ANRDATVAEIIAPVPGGVAQVDRAFAGQTVTIRLTEDVDVSRGDTFVPRNTSGAKIEP
                     AKKLDADLCWFDEEPLSPQRKYLLKQTTNTVFARIGAIKEVLDVHTLLHSVDRHNLTM
                     NDIGRVALTLQKPIACDAYDTHRGTGAFVLIDEATHHTVAAGMIRAYSA"
     gene            complement(1536..2498)
                     /gene="cysD"
                     /locus_tag="VKJ77_21030"
     CDS             complement(1536..2498)
                     /gene="cysD"
                     /locus_tag="VKJ77_21030"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0019419 - sulfate reduction [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HMC47815.1"
                     /translation="MSSTLDSTVNAPIANRGDRMDHLDWLEAESIHILRELVAECSKP
                     ALLFSGGKDSVVVLHLALKAFGLGSGRKTVLPFPLVHIDTGHNFSEVIDFRDRRAAEI
                     GAELVVGHVEDSIKKGTVRLRRETDSRNAAQAVTLLETIEEYGYTALIGGARRDEEKA
                     RAKERIFSFRDEFGQWDPKAQRPELWSIYNARLHNGEHLRVFPISNWTELDIWQYIGR
                     EKLELPSIYYAHDREIIRRNGLLVPLTPITPLQEGEVSEVAQVRFRTVGDISCTCPVA
                     SDADDVEKIIAETAVTEITERGATRMDDQASEAAMETRKKQGYF"
     gene            complement(2566..>2829)
                     /locus_tag="VKJ77_21035"
     CDS             complement(2566..>2829)
                     /locus_tag="VKJ77_21035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase family
                     protein"
                     /protein_id="HMC47816.1"
                     /translation="AKFNPLADWTEADVWAYLKAFDVPVNPLHARGYPSIGCEPCTRA
                     IRPGEDSRAGRWWWESRDTKECGLHVTNIRLVEDRSAAPSSAL"
BASE COUNT          533 a          899 c          808 g          589 t
ORIGIN      
        1 aacgcttgcc gaccgcgatc ttgcgcgctt cgggcgcgta atcgagcatg gccggctcga
       61 tcaacgcgtc atgcaaaacc acattcgcct ggctcaacaa ccgggcgcca cgaaccgtaa
      121 tcaggtcggc agcccccggc cccgcgccga tcaaatacac cttacccata gtcaattctc
      181 aggctgaata cgcgcgaatc atcccggccg caaccgtgtg atgcgtcgct tcatcgataa
      241 gaacaaacgc gcccgtgccc cgatgcgtgt cgtaggcatc gcaggcgatc ggcttttgca
      301 gcgtcagcgc cacgcgaccg atgtcgttca tcgtcaggtt atggcggtcc accgaatgca
      361 gcagcgtatg cacgtcgagg acttccttga tcgcgccaat ccgcgcgaac accgtgttcg
      421 tggtctgctt cagcaagtac ttgcgctgcg gcgagagcgg ctcttcatcg aaccagcaga
      481 ggtccgcgtc cagcttcttc gccggctcga tcttcgcgcc gctcgtgttg cgcggcacga
      541 acgtatcgcc gcgggagacg tcgacgtctt ccgtcaggcg aatggtcacc gtctggcccg
      601 cgaacgcacg atccacttgc gccacgccgc ccggaaccgg agcgatgatc tcggcaacgg
      661 ttgcatcgcg gttggccggc aacacggtta ttgtgtcgcc cagctttact tcgcccgatt
      721 ccacccggcc catgtagccg cggaaatcgt cggcctggct accgtcctgg cgtgcgaccc
      781 attgcaccgg gaaacgcagc gcctgatcta caggctgcgc aaccggcagc gcttcgagca
      841 gatcgagcag cggttcaccc gcgtaccagg gcatacgctc gctggcggtc acgatgttat
      901 cgcccttgag cgccgatacc ggcacgaaac gcacatcggc aatccccagc cggcgcgcaa
      961 gttcaacgta cgcatcacgg atctcgttga agcgcgtctc gctgaactcg atcaggtcca
     1021 tcttgttgat cgcgacgatc acatgctgca gcccaagcaa cttgacgatc gcgctatggc
     1081 gcacggtctg cggcaacaat tgcgcaacgc catcctgcaa tgtcacgcgc gtggcatcca
     1141 cgaggatgat cgcggcatgc gcggttgatg cacccgtcac catgttgcgc gtgtactgct
     1201 cgtggccggg ggtatcggcg atgatgaact tgcgcttcgc cgttgcaaaa taacggtaag
     1261 ccacgtcgat cgtgatgccc tgctcgcgct cggcttcaag gccatcggtc agcagcgaca
     1321 gatcgatttc gtcgccaacg gtgcgcttgt tcttcgcccg cgacaacgcc gacaactgat
     1381 ccgacaacac tgccttgcta tcgaacagca ggcggccgat cagcgtgctc ttgccgtcgt
     1441 cgacactgcc tgcggtaatg aagcgcaaca cgccgaggtc ttcgggttga tgaatgctca
     1501 tgatgtttcc ctgttccttg tttgcggcgt gatgcttaga aataaccttg tttcttgcgg
     1561 gtttccatcg cggcttcgga ggcttggtcg tccatgcgcg tggcgccgcg ttccgtgatt
     1621 tccgtcacgg ccgtttccgc gatgatcttc tcgacgtcgt cggcatcgct ggcgaccggg
     1681 cacgtgcagc tgatgtcacc gacggtccgg aaacgcactt gtgcgacttc cgatacttcg
     1741 ccttcctgca gcggcgtgat tggcgtcagc ggcacgagca agccattgcg gcgaataatt
     1801 tcgcgatcgt gcgcgtagta aatggacggc aattcaagct tctcgcgccc gatgtattgc
     1861 cagatatcca gttcggtcca gttcgaaatc gggaacacgc gcaagtgttc gccgttatgc
     1921 aggcgcgcgt tatagatgct ccacaattcc gggcgttgcg ctttcggatc ccactggccg
     1981 aactcatcgc ggaaagagaa gatgcgctct ttcgcgcggg ccttttcttc atcgcgacgc
     2041 gcgccgccga tcaacgccgt ataaccgtat tcttcgatgg tttcgagcaa cgtcactgct
     2101 tgcgcagcat tacgcgaatc ggtttcgcga cgcaggcgca cggtgccttt cttgatcgaa
     2161 tcttcgacat gaccgaccac gagttccgca ccaatttcag cagcacgacg atcgcggaag
     2221 tcgatcactt cgctaaagtt atgaccggta tcgatatgaa ccagcgggaa cggcagcacg
     2281 gtcttgcgac ccgagcccag gccaaatgcc ttcaacgcga gatgcagcac gacgaccgaa
     2341 tccttgccgc cggagaacag caaagcaggc ttgctgcact cggccacgag ttcgcgcagg
     2401 atgtgaatcg actcggcttc gagccagtcg aggtggtcca tccggtcacc gcgattcgcg
     2461 atcggggcgt tgactgttga atcgagcgtg ctgctcatat gcgtcgttcc ttggttgctt
     2521 tgcatgacac ctagcttgcg gcgacatgcg tcaatatcac tgcgttcaga gcgccgaact
     2581 tggcgctgcg ctgcggtctt ccacgagtct gatattcgtc acgtgcaagc cgcattcctt
     2641 cgtgtcccgt gattcccacc accagcgtcc tgcccggctg tcttcgcccg gacggatggc
     2701 gcgcgtgcac ggctcacagc caatgctcgg ataaccgcgc gcatgcagcg ggttgacggg
     2761 gacatcgaag gccttcaaat aagcccagac atccgcttcg gtccagtccg cgagcggatt
     2821 gaacttggc
//
LOCUS       DATGBK010001509         1724 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_110364, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001509 DATGBK010000000
VERSION     DATGBK010001509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110364"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1724
                     /locus_tag="VKJ77_21040"
     CDS             <1..>1724
                     /locus_tag="VKJ77_21040"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HMC47817.1"
                     /translation="STAVAPQLPPVREGAPGPRQSQQAAQLAQQAAAVEESPDWAVTL
                     ERIASSVVSIEVDAVRAFDTEWNTSSQATGFVVDAEHGLILTNRHVVTPGPVTAEATF
                     LNREEVQLYPIYRDPVHDFGLYRYDPSKLHFIKPKALPLFPEGAQIGREIRVVGNNAG
                     EQLSILAGTLARLDRDAPDYGMGKYNDFNTFYLQAASGTSGGSSGSPVVDIRGRVVGL
                     NAGGANGAASSFYLPLGRVRRALELIQAGKPVTRGTLATVFSYVPYDELKRLGLSPST
                     EAAVRKAFPIYTGMLVVNEVLPGSPSAGVLQAGDVLVRLNGRFVTQFEPFEELLDSSV
                     GATVNLEFERGGKPLSAKLQVMDLNNITPSAFVEVGEAVVNTLTYQQARHFNVPVRGV
                     YVANPGYVFAAAGIPRGAVITTLDSKKIDNIDDFEAAVATLGDGDRAVARFFTIDDPN
                     GSQLRSFRMDRKWFPAHRCTRDDTQGLWPCKDLAGGSAPQPPKVGSTAYPHFEDSLLA
                     KIAPSLVQVSFDMPYSISGITERNYHGTGLVLDTELGLVVVDRNTVPVAEGDVSITFA
                     GTLQVPGR"
BASE COUNT          309 a          538 c          538 g          339 t
ORIGIN      
        1 cctcaacagc cgttgcaccg cagcttccgc cagtacgcga aggcgcgccg ggtccgcggc
       61 aaagccaaca agccgcacag ctcgcgcagc aggccgcggc ggttgaggaa agccccgatt
      121 gggcggtgac gctcgagcgt atcgcaagca gcgtcgtgtc gattgaagtc gacgcggtgc
      181 gcgccttcga taccgagtgg aacacctctt cacaggccac gggctttgtg gtcgatgccg
      241 agcacggcct cattctcacc aatcgccatg tcgtaacccc gggaccggtg accgcggagg
      301 cgacttttct caatcgcgag gaggtgcagc tgtatccgat ctatcgcgat ccggtgcacg
      361 attttggcct ctaccgctac gatccgtcga aactgcattt catcaagccg aaggcgctgc
      421 ctttgttccc ggaaggtgcg cagatcggac gcgagatccg tgtagtcggc aacaatgcag
      481 gcgaacagct gtcaattctt gccggcacgc ttgcgcgtct cgaccgcgat gcgcccgact
      541 acggcatggg caagtacaac gacttcaaca ccttctatct gcaggctgcg tccggaacat
      601 ccggcggctc ctccggatcg ccggtcgtcg acatccgcgg gcgggttgtc ggtttgaatg
      661 ccggtggcgc gaatggcgcg gcgtcgagtt tctatctgcc gctcgggcgc gtgcggcgcg
      721 cattggagtt gattcaagcc ggcaaacccg tgacccgcgg cacactcgcc acggtattca
      781 gctatgtgcc gtatgacgag ctcaagcgtc ttggcttgag cccctcgact gaagcggcgg
      841 tgcgcaaggc gttcccaatt tacacaggca tgctggtcgt caatgaagtg ctgccgggat
      901 cgccgagcgc gggcgtactg caggcgggtg atgtgctcgt gcgtttgaac ggccgcttcg
      961 tgacccagtt cgagccgttc gaggagctgc tcgattcctc agtcggcgcg actgtcaatc
     1021 tcgagttcga gcgcggcggc aagccgctgt ccgcgaagct gcaggtcatg gatttgaaca
     1081 atattacgcc aagcgccttc gtggaggtcg gtgaggcggt cgtcaacacg ctcacctatc
     1141 agcaggcgcg ccatttcaat gtgccggtgc gcggcgtgta tgtcgcgaac cctggctatg
     1201 tgttcgccgc agctggcatt ccgcgcggcg ctgtgattac gacgctcgac tcgaaaaaga
     1261 tcgacaatat cgatgacttc gaggcggcgg tcgcaacctt aggcgacggc gatcgggcgg
     1321 tcgcgcgctt tttcacgatt gatgatccga acggcagtca attgcgttcc ttccgtatgg
     1381 accgcaagtg gttcccggcg catcgctgca cccgcgacga cacccagggg ctctggccct
     1441 gcaaggatct tgccggaggt tccgccccgc aaccgccgaa ggttggcagc accgcttacc
     1501 cgcactttga ggattcgctg ctcgcaaaga ttgcgccatc cttggtgcag gtcagcttcg
     1561 acatgccgta ttcgatctcc ggcatcaccg agcgcaacta ccacggcacc gggctcgtgc
     1621 tcgataccga gctcggtctc gtcgtagtgg atcgcaacac ggtaccggtc gcagaaggcg
     1681 acgtcagcat tacattcgcc ggcacgctgc aggttccggg gcgc
//
LOCUS       DATGBK010001510         1645 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_295396, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001510 DATGBK010000000
VERSION     DATGBK010001510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295396"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1645
                     /locus_tag="VKJ77_21045"
     CDS             <1..>1645
                     /locus_tag="VKJ77_21045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004543744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC47818.1"
                     /translation="IEKRRKADLSQHQDDAGRDRAARVEILISAACRAVEDFKKEFEQ
                     TYDLRKKASKVFSKVTEKDNIKFDGLSRVSHVTDATDWRVEYPFVVLTPDTEAEIAGL
                     IKACFELGLTVIPRGGGTGYTGGAIPLTPFAAVINTEKLEQLGPVEMTDLPGVDHKVA
                     TIFSGAGVVTRRVTEAAEHAGFVFAVDPTSLDASCVGGNVAMNAGGKKAVLWGTALDN
                     LAWWRMVDPQGNWLEVTRLEHNCGKIHDIPVARFRLDWFDGSRAPGEKLLRTESLDIA
                     GSKFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITSARWILHKMPAHTRTVCLEFFGQA
                     RDAIPSIVEIKDYLFETSKKGGAILAGLEHLDERYLRAVGYATKSKRNAFPKMVLIGD
                     IVGDDPDAVAQATSEVVRMANGKSGEGFVAVNAEARKRFWLDRSRTAAIAKHTNAFKI
                     NEDVVIPLNRMGEYTDGIERINIELSIKNKLQLVDALETLFKTGKLPLGKSDDANEIP
                     SAELLEDRVQQALDLLKRVRERWTFVGEKLDLPLREAQHY"
BASE COUNT          360 a          469 c          519 g          297 t
ORIGIN      
        1 tatcgaaaag cgtcgtaaag cggatctgtc gcaacatcag gacgacgccg gccgcgaccg
       61 cgcggcgcgt gtggaaatac tgatcagcgc cgcgtgccgg gcggttgaag atttcaagaa
      121 agagttcgag caaacctacg atctgcgcaa aaaagcgtcg aaggtcttca gcaaggtcac
      181 cgagaaagac aacatcaagt tcgacggcct gtcgcgcgta tcgcacgtga cggatgccac
      241 ggactggcgc gtcgaatacc cgttcgtcgt gctgacgccg gataccgagg cggaaatcgc
      301 cggcttgatc aaggcgtgct tcgaactcgg tctcaccgtg attccgcgtg gaggcggcac
      361 cggctacacc ggcggcgcga ttcccttgac accgttcgcg gccgtcatca ataccgaaaa
      421 actcgaacag ctcggacccg tcgaaatgac ggatctgccg ggcgtcgacc ataaagtcgc
      481 gaccattttc tcgggcgcgg gcgtggtcac tcgccgagta acggaagcgg cggaacacgc
      541 cggtttcgtg ttcgccgtcg atccgacgtc gctggatgca tcgtgcgtgg gcggcaatgt
      601 cgcgatgaac gccggcggta aaaaggccgt gctgtggggc acggcgctcg acaatctggc
      661 ctggtggcgc atggtcgatc cgcaaggcaa ctggctcgaa gtcactcgcc tggagcacaa
      721 ctgcggcaag attcacgaca ttcccgtggc gcgtttccgg ctcgactggt tcgacggttc
      781 gcgcgcgcca ggcgagaaat tgctgcgcac tgaatcgctc gatattgccg gcagcaagtt
      841 ccgcaaggaa gggcttggca aggacgtgac ggataaattc ctgtcgggtc tgccgggcgt
      901 gcagaaggaa ggttgcgacg gcctgattac atctgcgcgc tggatcctgc acaagatgcc
      961 cgcgcacacg cgtaccgtct gcctcgaatt cttcggtcag gcacgcgacg cgattccgag
     1021 catcgttgaa attaaagact atttgttcga gacatcgaag aagggcggcg cgattctcgc
     1081 cggtctcgaa catctcgacg aacgttatct gcgcgctgtc ggttacgcga ccaagagcaa
     1141 gcgcaacgcg tttccgaaga tggtgctgat tggcgatatc gtcggtgacg atccggatgc
     1201 tgtggctcag gctacgtctg aagtcgtccg catggcgaac ggcaagagcg gcgaagggtt
     1261 tgtcgcggtg aacgctgaag cgcgcaaacg cttctggctc gatcgctcgc gcacggccgc
     1321 tatcgcgaag catacgaacg cgttcaagat caatgaagac gtcgtgatcc cgctgaaccg
     1381 catgggcgag tacacggacg ggatcgagcg gatcaacatc gagttgtcga tcaagaacaa
     1441 gctccaactc gtcgatgccc tcgaaacact cttcaagacg ggcaagctgc cgctcggaaa
     1501 gagcgacgac gcgaacgaga tcccgagcgc cgagttgctc gaagaccggg tacagcaggc
     1561 gcttgatctg ctcaagcgcg tgcgtgaacg ctggacattc gtcggcgaaa aactggatct
     1621 gccgttgcgc gaagcgcagc actat
//
LOCUS       DATGBK010001511         2869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_226380, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001511 DATGBK010000000
VERSION     DATGBK010001511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226380"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..1418
                     /locus_tag="VKJ77_21050"
     CDS             72..1418
                     /locus_tag="VKJ77_21050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HMC47819.1"
                     /translation="MNELTLLTEADDRARRYTESIPGRRVFPDQAALQALAVFNEPLP
                     ARGYAPEDVLRMLDDIGSPGTVVSNGPHYFGFVIGAALPAAAAAERLMLAWDQCASSF
                     DNSPVAATLERVAAGWVLEVLDLPRESAVGFGTSATACTLSCLAAARRVLLARKGWDF
                     DNEGLAGAPEVKVVVSELVHITVKKALRLLGFGMNKIVFAPVNRHGQVDPDRLPPLDD
                     MTILCLQAGEVNTGEFDPFDVIIPRAKAAGAWVHVDAAFGMWARASSHAELTKGIEGA
                     DSWTTDAHKWLNTPYDCAMAICRDSEALAAAMNSDAVYLSGARDAQKNLTLEFSRRAR
                     GIPVWAALRSLGREGVASMVSKHCALARRVAQGLEQAGFEILNRVTLNQILVRAHTDE
                     LTIAAREAVQESGEAWFGATVWEGRPAFRISVSSWRTTEHEADALVELLTGIAKRR"
     gene            complement(1725..>2869)
                     /locus_tag="VKJ77_21055"
     CDS             complement(1725..>2869)
                     /locus_tag="VKJ77_21055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020204451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HMC47820.1"
                     /translation="HRVQTQCNSNKKTITMSDTENTALKEIFNERRFRDMALDVKAVY
                     PPFDTRRFLKVSLAGLDDLTLMQRLRRMTQALHATLPADYRQALEVLRALALRIENGF
                     ATLVLPDYVGQYGQDDFDVSMDALKFFTAFGSSEFAVREFLRKDLKRALAIMKVWSRD
                     DSDAVRRLASEGSRPRLPWSFRLDAIVADPSLAAPILENLRSDASLYVRKSVANHLND
                     VTKSHPEWVLDRLATWPIENAHTAWIAKRALRSLIKAGNGRALAVIGAGGVPEVKVSK
                     FAVTPRQVALGERVTLSFDLASKCPESQRLVIDYRMHYVKKSGVTAAKVFKLKELTLD
                     GGQKVAIERTQNIKDFTTRVHYAGRHDVEILVNGVCLAKGYFDLSC"
BASE COUNT          576 a          823 c          905 g          565 t
ORIGIN      
        1 tggcattgcg gtccatgcca gacaggaacc gaagccactg cctactgctt tgtacctgat
       61 cggaaaaagc catgaacgaa ctaacactgc tgaccgaagc cgatgatcgg gcacgccgct
      121 acaccgagtc catccccgga cgacgagtat ttcccgatca agcggcgctg caggcgctag
      181 ccgtattcaa cgagccgcta ccggcgcgcg ggtatgcgcc agaagacgtg ctgcggatgt
      241 tggacgatat cggttcgcct ggcacggtgg tctcgaacgg acctcattac ttcggctttg
      301 tgattggcgc ggcgttgccg gctgctgctg ccgcagaacg gctgatgctg gcatgggacc
      361 aatgcgcatc gtcattcgac aactcaccgg tcgcggccac gcttgaacgc gttgcggcgg
      421 gctgggtgct tgaagtgctg gatctgcctc gcgaaagcgc cgtggggttc ggaaccagtg
      481 cgacggcgtg cacgctaagc tgtcttgccg ccgcgcgtcg cgtgctgctt gcacgcaagg
      541 gctgggattt cgacaacgag ggactggcag gtgctcccga ggtcaaggtc gtggtgtccg
      601 aacttgtgca tatcaccgtg aaaaaggcgc tccgtttgct gggtttcggc atgaacaaga
      661 tagtgttcgc accggtcaac cgccatggcc aggtagaccc ggaccgactg cctccgctgg
      721 atgacatgac aatcctttgt ttgcaggcgg gtgaagtcaa cacgggcgaa ttcgatccct
      781 tcgacgtgat cattccccgg gccaaggcgg cgggcgcgtg ggttcatgtc gatgcggcgt
      841 tcggcatgtg ggcgcgtgcg tcctcgcacg cggaactgac gaaaggcata gaaggggccg
      901 atagctggac taccgacgcc cataagtggc tgaacacacc ctacgactgc gcgatggcaa
      961 tctgtcgcga cagcgaagcg ctcgccgccg caatgaacag cgatgcggtc tatttaagtg
     1021 gggcgagaga cgcccagaaa aacctgaccc tcgaattttc gcgcagggct cgcggtatac
     1081 cggtgtgggc ggcgttgcgg tcgctagggc gtgaaggggt ggcttcaatg gtgagcaaac
     1141 attgtgcgct ggcgcgtcgc gttgcgcagg ggctggagca agcaggattc gaaattctga
     1201 accgcgtcac actcaaccag atcctcgtgc gcgcgcatac cgatgaactc accattgctg
     1261 cccgtgaggc agtccaggag tccggcgagg catggtttgg cgcaaccgtc tgggaagggc
     1321 ggccggcatt ccggatcagc gtgtcgtcgt ggcggacaac ggaacacgaa gcagacgcgc
     1381 tcgttgaatt gttgaccggg attgcaaagc ggcgttaaac aaggcggcat tcaacgcgct
     1441 attgggtgag gttcccccag gctagcggtg tcggccgaga agcgcgcgaa ggtggatcgc
     1501 aaggctgacc aatatcgcca gcgcgcccag cgtttcgagt attggcgaga gcatcgcgtc
     1561 agatctccca gagggtcgac gccggtggca tggtcccggc gcaaggctca aatgaaatgc
     1621 cgtaacagca gttgaagacc gagcgccagc atgcagataa agaaccatcg gcggaaggtc
     1681 gcagggctga tgtggccacg tgccaggaga gcaacccatg aacgtcagca actcagatcg
     1741 aaatatccct tggcgaggca tacgccgttc acaaggatct cgacgtcgtg ccgcccggca
     1801 taatgcacgc gtgtagtgaa gtccttgatg ttctgcgtgc gttctatcgc taccttttga
     1861 ccgccgtcga gtgtcaactc cttgagcttg aatactttcg cggccgtcac gcccgatttc
     1921 ttcacgtaat gcatcctgta gtcgatcact agccgctggc tttccgggca ctttgacgcc
     1981 agatcgaatg acaaggtcac acgctcgccc aatgcaacct gacgtggcgt caccgcgaac
     2041 ttgctgacct tcacttcggg cacgccgccc gcgccgatca cggccaatgc gcggccgttg
     2101 ccggccttga tcagcgagcg caaggcgcgc tttgcgatcc aggctgtgtg agcgttttcg
     2161 atcggccacg tcgccagccg atccagcacc cactccggat gcgatttggt cacatcgttc
     2221 agatgattgg cgactgactt gcggacatag aggctcgcgt ccgagcgcaa gttctccaga
     2281 atcggcgcag ccagcgaagg atctgccacg attgcgtcga gccggaaaga ccatggcaag
     2341 cgcggacggc tgccttcact cgcgaggcgc cgcacggcgt cgctgtcatc gcgtgaccat
     2401 actttcatga tggcaagcgc tcgcttcaga tccttgcgca ggaattcgcg taccgcaaac
     2461 tcggatgagc cgaaggccgt gaaaaacttg agcgcgtcca tcgatacatc gaagtcgtcc
     2521 tggccgtatt gtccgacgta gtcgggaagg actagcgttg caaatccgtt ctcgatgcgc
     2581 agtgccagcg cacgaagaac ctcgagcgct tggcgatagt ccgcaggaag ggttgcatgc
     2641 agcgcctggg tcatgcggcg caggcgctgc atcaacgtca ggtcgtcgag cccggctagc
     2701 gagaccttga ggaaacgccg cgtgtcgaat gggggataaa ccgctttgac gtcgagtgcc
     2761 atatcgcgga atcggcgctc gttgaagatc tctttcaatg cagtgttttc ggtgtccgac
     2821 atcgttatcg ttttcttgtt ggaattgcac tgggtttgca cgcggtgct
//
LOCUS       DATGBK010001512         1754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_17411, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001512 DATGBK010000000
VERSION     DATGBK010001512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17411"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            195..383
                     /locus_tag="VKJ77_21060"
     CDS             195..383
                     /locus_tag="VKJ77_21060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017333879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3460 family protein"
                     /protein_id="HMC47821.1"
                     /translation="MMYLSDITQFINQMKEQKPSLEAEQRQGRALLWDKQPIDLDERS
                     EAKTSRVDQTPYVYYQNF"
     gene            425..1303
                     /locus_tag="VKJ77_21065"
     CDS             425..1303
                     /locus_tag="VKJ77_21065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007738241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HMC47822.1"
                     /translation="MGHPSGHPGHSGKDDRAAALAAPATDSTPNTIDGVAFAHLYGEP
                     LWKLPTDLYIPPDALEIFLEAFEGPLDLLLYLIRKQNFNVLDIPMADVTRQYLGYVDQ
                     IRESNLELAAEYLLMAAMLIEIKSRMLLPVKKADTGEEAEDPRAELVRRLLEYEQMKL
                     AAQRLDHLPQLGRDFLRAEVYVEQSSAQRFPDVDANDLRAAWADVIKRARLVEHHKIS
                     REELSVREHMSVILRRLQNARFMEFGDLFDSSRGVPVVVVNFIAMLELSREALIEITQ
                     AEPYAPIYVRLAYSPA"
     gene            1409..>1754
                     /locus_tag="VKJ77_21070"
     CDS             1409..>1754
                     /locus_tag="VKJ77_21070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HMC47823.1"
                     /translation="MKVISSIHELRDQLRGQNRTAFVPTMGNLHEGHLSLMRLARQHG
                     DPVVASIFVNRLQFGPKEDFDKYPRTLQDDIEKLQAENVYVLFAPTEADLYPEPQQYR
                     VHPPTNLGDILEG"
BASE COUNT          358 a          555 c          515 g          326 t
ORIGIN      
        1 cacacttgcg gccgtgccgg tagtccgaat agctgatgtc cccgcttgtc cgcgaccttc
       61 gagcgggtta accgctccgc tccctgatgc ttgcggtaaa attgcgagga atcacggcgg
      121 caaatcatgg cggcaacgca cttgagcctc cgccgcgccc gttttcgaat cggtctgagc
      181 caaacggaag tcgaatcatg tacctgtcgg acatcaccca gttcatcaac cagatgaaag
      241 agcagaaacc gtcgctcgaa gcagagcagc gccagggccg tgcactgctg tgggacaagc
      301 agcctattga cctggacgag cgctcggaag ccaagacatc acgggtcgat caaactccct
      361 acgtttatta ccagaatttc tgaacgtgag tgccgcccgc gaggcgccgc aagctccgga
      421 gcgcttggga cacccttcgg gacacccagg acactcgggc aaggatgatc gcgccgcggc
      481 gcttgccgcg cccgcgaccg actccacgcc gaacaccatt gacggcgtgg cgtttgcgca
      541 tctgtacggc gagccgctct ggaagctgcc aacggacctg tatatcccgc cggacgcact
      601 tgagattttt ctcgaagcgt tcgaaggtcc gctcgacttg ctgctgtacc tgatccgcaa
      661 gcagaatttc aacgtcctcg acatcccgat ggccgacgtc acgcgccagt acctgggcta
      721 cgtcgaccag attcgcgaat ccaacctgga actcgcggcg gaatatctgt tgatggcggc
      781 catgctgatc gagatcaagt cgcgcatgct gctgccggtg aaaaaggcgg ataccggcga
      841 ggaagcggaa gatccgcgcg ccgaactcgt gcggcgcttg ctggaatacg agcagatgaa
      901 gctcgctgcg cagcgcctgg accacctgcc gcaactgggc cgcgacttcc tccgggcaga
      961 ggtgtacgtc gagcagagct ccgcgcaacg cttccccgac gtcgatgcaa acgacctgcg
     1021 cgctgcctgg gccgacgtca tcaagcgcgc ccgactggtc gagcatcaca agatctcgcg
     1081 cgaggaattg tcggtgcgag agcatatgag cgtgatcctg cggcgcctgc agaatgcccg
     1141 tttcatggaa ttcggcgatc tcttcgactc gtcgcgcggc gtacccgtcg tggtggtgaa
     1201 tttcatcgcc atgctcgagc tgtcgcgcga agcgctgatt gaaatcaccc aagccgagcc
     1261 gtatgcgcct atctacgtga gactcgcgta ttcgccggct taagccttcc gtggtgcaca
     1321 ggtggcgcat atgcagcgcg gcgcccctcc cctttctttc cccttggagc agtgttttca
     1381 aagctgcccg ccaggagaca cctgctagat gaaagtcatc agctcgatcc atgaactgcg
     1441 cgaccagttg cgcggccaga accgaaccgc ctttgtcccg accatgggca acctgcacga
     1501 aggccacctg tcgctcatgc ggctggcgcg ccagcatggg gacccggtgg ttgccagcat
     1561 tttcgtgaac cggttgcagt tcgggccgaa agaagatttc gataaatatc cgcgcacgct
     1621 ccaagacgac atcgaaaagc tgcaggccga gaacgtgtac gtgctgttcg cgccgaccga
     1681 agccgatctt tatccggagc cgcagcaata ccgggttcat ccgccgacca atctgggcga
     1741 catcctggag ggcg
//
LOCUS       DATGBK010001513         1925 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_318571, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001513 DATGBK010000000
VERSION     DATGBK010001513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318571"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..381)
                     /locus_tag="VKJ77_21075"
     CDS             complement(<1..381)
                     /locus_tag="VKJ77_21075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HMC47824.1"
                     /translation="MPQSPSKSSSDLDTLAINTIRTLSMDAVQKANSGHPGTPMALAP
                     VGFHLWQNHLRYDPAEPLWPNRDRFVLSVGHASMLLYSLLHLTGVKAVDHAGKPTGGP
                     AVSLDDIKQFRQLDSKTPGHPEYRM"
     gene            complement(677..1729)
                     /locus_tag="VKJ77_21080"
     CDS             complement(677..1729)
                     /locus_tag="VKJ77_21080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015601897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047834 - D-threo-aldose 1-dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(H)-dependent aldo-keto reductase"
                     /protein_id="HMC47825.1"
                     /translation="MEFRKLGGTDVNVSLIGLGTMTWGEQNTEADAHAQLNAALDAGI
                     NLIDAAEMYPVPPRPETQGRTEAYIGTWLAANPGVREKIVLATKIAGPARQPHNPRHI
                     RGAGNQFDRQNLTEAVDTSLARLQTDYVDLYQLHWPDRSTMTFGRTNYPWIKDEYTVP
                     IEETLTVLGDLVKAGKIRYVGVSNETPWGVAQFLQAADKLGLPRIVSIQNPYSLVNRT
                     FETGLSEFTHKEDVGLLAYSPLAFGWLSGKYEGGARPAGARITLFERFARYSKPHTIK
                     AVSGYVELARRHGLSPAQLALAFVNSRPFTTSTLIGATSLAQLHENIGSLDVKLSDEI
                     LAEIDALHEAQPNPAP"
BASE COUNT          363 a          564 c          604 g          394 t
ORIGIN      
        1 catacggtat tcggggtgac ctggcgtctt gctgtcgagc tgccgaaact gcttgatgtc
       61 atccagcgac accgccggac cacccgttgg cttaccggcg tgatcgacgg ctttcacacc
      121 ggtcaggtgc aacagggaat acagcagcat ggacgcatgg ccgaccgata gcacgaagcg
      181 gtcgcgattc ggccacagcg gctcagccgg gtcatagcgc aagtggtttt gccacagatg
      241 gaagccgacc ggtgcgagcg ccatcggcgt acccgggtga ccggaattgg ctttttgcac
      301 ggcgtccatg gacagcgtgc ggatggtgtt gatggcgagg gtgtcgagat cggaagagga
      361 cttcgagggg gattgcggca tgagcgacga ctcctttgcg tagggcgcgc tgaggcacga
      421 gaggcaccac agcggcaacc gggaccttcg agcaagtgta gtgccatgac aactggcgcg
      481 tcaccaaaga gcagcgaagc gcgcgccaac caagcacggc gcggcttatg acagacgatt
      541 acgacatcaa cgagacaaca actttacgct tgaaaccaag caaaaacgaa cgcgatgggt
      601 aaaaaatcgt gcccggttaa tcgggcccgt tttcaatcag cgtacgacaa gcgtatgaca
      661 gttttcagcg aaacgatcag ggcgcaggat tcggctgggc ttcgtgaagc gcatcgattt
      721 cggccaggat ctcatcggac aatttcacgt ccaggctgcc gatgttctcg tgcaattgcg
      781 cgagcgacgt tgcgccgatc agcgtgctgg tcgtgaatgg ccggctgttc acgaacgcga
      841 gcgcgagttg cgccgggctc aggccgtgac gccgcgccag ttccacgtag ccgctgacgg
      901 ccttgatcgt gtgcggcttg ctgtagcggg caaatcgctc gaacagcgtg atgcgggcgc
      961 cggccggacg cgcaccgccc tcatacttgc cggatagcca gccgaacgcc agaggcgaat
     1021 acgccaacag gccgacgtct tccttgtgcg tgaattccga gagtccggtt tcgaacgtgc
     1081 ggttcaccag gctgtacgga ttctggatgc tcacgatccg cggcaggccg agtttgtcgg
     1141 cagcctgcaa gaattgcgcg acaccccagg gcgtttcgtt cgataccccg acgtagcgga
     1201 tcttgcccgc tttcacgaga tcgccgagca ccgtcagcgt ctcttcaata ggcaccgtat
     1261 attcgtcctt gatccacgga taattcgtgc gtccgaacgt catcgtgctg cggtcgggcc
     1321 agtggagctg gtacaaatcg acgtaatccg tctgcagccg tgcgaggctg gtatcgacgg
     1381 cttcagtcag gttttgacgg tcaaactggt tgcctgcgcc gcgaatgtgc cgcggattgt
     1441 gcggctggcg tgcgggtccg gcgatcttgg tggcgagcac gatcttttcg cgtacgcccg
     1501 gattcgctgc cagccacgtg ccgatgtatg cctccgtgcg cccttgcgtc tcggggcgcg
     1561 gcggcaccgg gtacatctcg gcggcgtcga tcaggttgat gccggcatcg agcgcggcgt
     1621 tgagttgcgc gtgtgcatcg gcttccgtgt tctgttcgcc ccaggtcatc gtgcccagtc
     1681 cgatcaggct gacattgaca tccgttccac cgagtttccg aaactccatc gcttgcttcc
     1741 ccatgttcgt gttcaggttt taaaggcgct cgccgaatgc cgaagctacc atagcgcggg
     1801 ccttgctgca gcgatgcgca tcgccacagc cttcgccttg cccggtaagc tgtcggcatg
     1861 cggcgagccg tggctttcat tagcttttca atctcgctgc gctcattcag atccatataa
     1921 gagag
//
LOCUS       DATGBK010001514         2281 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_295536, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001514 DATGBK010000000
VERSION     DATGBK010001514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2281
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295536"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2229)
                     /locus_tag="VKJ77_21085"
     CDS             complement(<1..2229)
                     /locus_tag="VKJ77_21085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HMC47826.1"
                     /translation="MAFQSTLPFEAITNRASVSSHLRAVPAREGHWDELRDAAGQLRA
                     PWQQFFDSLGEDGIADLDRATASIAQQVRDNDISYNVYADKGEPRPWALDLLPFLIDE
                     GEWSVIERAVTQRAKLLNAIVADIYGPQTLLHDGLLPPALVFGHPGYLRSVKGFVPPG
                     AQYLQLVAVDLTRAPNGRWTVMAHRTEAPSGLGYALENRLIVSDVFAEPFRSMKVQRL
                     APFYSQLIAALVQGGRALMSGEGSPHIALLTPGPFSETFFEHAFLARYLGVTLVEGKD
                     LTVRDDMLFLKTFAGLERVHVLVRRLDDAFCDPVELRADSTIGVPGLLQVMRAGNVMV
                     SNVPGSGFVESPALHGFLPAISRALLNEPLELASVPTWWCGEEAAREAVLERLDKAFV
                     IPTWPGLPLNGGSPRGFGDGLQPLAGWRARIDAMPDAFTIQNLFPSSHAPRYEDNTLT
                     GRPSVLRVYAIANIDGGWSVMPGGFTRLGAERQPSVSMQYGSSSVDTWVLSSKPGSSL
                     SLLPTPIKPADLARKHRTVSSRAAENLFWAGRYGERAENNVRLLRVILSSIDNNDSES
                     MLETMVDLAWQCGLLPPGTALQGHTARGLERLLVANIGENGTAASIGQNLASQVRASS
                     EIRGRLSTDHWRTILAARNDFRDAIQHFKPGPDVERYDRVKLTRTLETLSTQLLAISG
                     AQGDRMTRDEAWKLVFAGRHIERVWTMTTFLRVTAEHGQMTTPAGFDLLLQLFDSTLT
                     YRS"
BASE COUNT          423 a          739 c          723 g          396 t
ORIGIN      
        1 cgatcggtac gtgagcgtgc tgtcgaacaa ttgcagcagc aaatcgaacc cggccggcgt
       61 cgtcatctgg ccatgctcgg cggtcacgcg caggaaggtg gtcatcgtcc atacccgttc
      121 gatgtgccgt cccgcgaaca ccagcttcca cgcttcgtcg cgcgtcatgc ggtcgccctg
      181 cgcgccgctg atcgcgagca gttgcgtcga cagcgtttca agcgttcgcg tgagcttcac
      241 gcggtcataa cgctccacgt ccggtcccgg cttgaagtgc tggatggcat cgcggaaatc
      301 gtttcgcgcg gccaggatcg tgcgccagtg atcggtcgaa agacgtccgc ggatctcgct
      361 gctcgcgcgc acctggctcg ccaggttctg gccaatactt gctgccgtgc cgttctcgcc
      421 aatattggcg accagcaaac gttcgagccc gcgcgccgtg tgcccctgga gcgccgtgcc
      481 cggcggcagc aggccgcatt gccacgcgag gtccaccatc gtctccagca tgctctcgga
      541 gtcgttgttg tcgatcgacg agaggatcac gcgcagcagc cgcacgttgt tctcggcgcg
      601 ttctccatat cgtccggccc agaagaggtt ttctgccgcg cggctcgata ccgttcgatg
      661 cttgcgcgca aggtcagccg gtttgatcgg cgtggggagc agcgagaggc tcgaaccggg
      721 cttgctcgac agcacccagg tgtcaacgct gctgctgccg tattgcatcg ataccgacgg
      781 ttggcgctct gccccaagcc gcgtgaatcc gcccggcatc acggaccagc cgccatcgat
      841 gttcgcgatt gcataaacac gcagcaccga cggccgtccc gtcagcgtgt tgtcttcata
      901 acgcggcgcg tgcgaactcg ggaacaggtt ctggatggtg aatgcgtccg gcatggcatc
      961 gatccgggcg cgccagccgg cgaggggttg caagccgtca ccgaaaccgc gcgggctgcc
     1021 gccgttgagc ggcaagccag gccaggtggg aatcacgaac gccttgtcca ggcgctcgag
     1081 taccgcttcg cgcgccgctt cttcaccgca ccaccaggtg ggcacgctgg cgagttccag
     1141 cggctcattc agcagcgccc gcgagatggc cggcaagaaa ccatgcagcg caggtgattc
     1201 gacaaaacct gagcccggca cgttggacac catcacgttg ccggcccgca tcacctgcaa
     1261 caggcccggc acgccgatgg tggaatcggc gcgcaattcg accggatcgc agaaagcatc
     1321 gtccaggcgg cgcaccagta cgtggacccg ttccagtccg gcgaatgtct tgaggaacag
     1381 catgtcgtcg cgcacggtca ggtccttgcc ttcgaccagc gtgacgccaa ggtagcgagc
     1441 aaggaacgca tgctcgaaga aggtttcgct aaaaggcccc ggcgtcagca gcgcgatatg
     1501 aggcgaacct tcgcctgaca tcagcgcccg gccgccctgc accagcgcgg cgatcagttg
     1561 cgagtagaac ggggcgagcc gctggacctt catggagcgg aacggctcgg caaatacgtc
     1621 agagacaatg aggcggtttt ccagcgcata accgagtccg gacggcgctt cggtccggtg
     1681 cgccatcacg gtccatctac cgttgggagc acgcgtcagg tccacggcaa caagctgcag
     1741 atactgcgcc cctggcggca cgaaaccctt caccgagcgc agatacccgg gatgcccgaa
     1801 caccagcgcg ggcggtagca ggccgtcatg cagcagcgtc tgcggcccgt agatatcggc
     1861 gactatggcg ttgagcaact tcgcgcgctg cgtcaccgcg cgctcgatca ccgaccactc
     1921 gccttcgtcg ataagaaacg gcagcaagtc cagcgcccac ggacgaggct cgcccttgtc
     1981 ggcgtagacg ttgtaactga tgtcgttatc gcggacctgc tgtgcgatgg aagcggtcgc
     2041 ccggtcgagg tcggctatgc cgtcctcgcc gagagaatcg aagaattgct gccagggagc
     2101 gcgcaactgg cccgccgcat cgcgcagttc atcccaatga ccctcccggg ccggtaccgc
     2161 gcgaaggtgt gacgacacac tcgcgcggtt ggtgattgct tcaaacggaa gcgtggattg
     2221 gaaggccaaa ttgagcagtt ttcgttgatg aggctaccgt cggcgcaaat cgagcgtgaa
     2281 c
//
LOCUS       DATGBK010001515         1981 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_318588, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001515 DATGBK010000000
VERSION     DATGBK010001515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318588"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..420)
                     /locus_tag="VKJ77_21090"
     CDS             complement(<1..420)
                     /locus_tag="VKJ77_21090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004527775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HMC47827.1"
                     /translation="MSSTAISSPNAANVLEPIAEDMQQVNRVIRQRLASEVMLINQIS
                     EYIIGAGGKRLRPALLLLVAGALGDTTGHRHELAAVVEFIHTATLLHDDVVDESDLRR
                     GRKTANALFGNAASVLVGDFLYSRSFEMMVGVGKMRVM"
     gene            701..1015
                     /gene="rplU"
                     /locus_tag="VKJ77_21095"
     CDS             701..1015
                     /gene="rplU"
                     /locus_tag="VKJ77_21095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011902040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HMC47828.1"
                     /translation="MYAVIKTGGKQYKVAVGEKLKVEQIPADIDAEITLDQVLAVGEG
                     ESIQFGAPLVSGASVIATVVSQGRHKKVTIFKMRRRKHYQKHAGHRQNYTELRIDAIN
                     AA"
     gene            1055..1315
                     /gene="rpmA"
                     /locus_tag="VKJ77_21100"
     CDS             1055..1315
                     /gene="rpmA"
                     /locus_tag="VKJ77_21100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006576524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HMC47829.1"
                     /translation="MAHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTR
                     MHPGDNVGMGKDHTLFALTDGHVTFSTKGAAKKHLVNVVPAA"
     gene            1536..>1981
                     /gene="obgE"
                     /locus_tag="VKJ77_21105"
                     /gene_synonym="cgtA"
                     /gene_synonym="obg"
                     /gene_synonym="yhbZ"
     CDS             1536..>1981
                     /gene="obgE"
                     /locus_tag="VKJ77_21105"
                     /gene_synonym="cgtA"
                     /gene_synonym="obg"
                     /gene_synonym="yhbZ"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007747165.1"
                     /note="ObgE; essential GTPase; exhibits high exchange rate
                     for GTP/GDP; associates with 50S ribosomal subunit;
                     involved in regulation of chromosomal replication; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HMC47830.1"
                     /translation="MKFIDEARIEVIAGDGGDGSASMRREKFVPFGGPDGGDGGRGGS
                     VYAVADRNINTLIDYRYAKKHQARNGENGRGADCYGKGGDDIILRMPVGTIIADTETG
                     ELIADLTEHNQSVLIAHGGAGGLGNLHFKSSTNRAPRQKTEGKPGDR"
BASE COUNT          444 a          548 c          638 g          351 t
ORIGIN      
        1 catcacgcgc atcttgccca cgccgaccat catttcgaag gagcgcgagt acaaaaagtc
       61 gccgacgagc acgctcgccg cgttgccgaa tagcgcgttc gcggtcttgc ggccgcgccg
      121 gagatcggat tcatcgacta cgtcatcgtg cagcagagtg gccgtatgaa tgaactcgac
      181 gaccgcggcc agttcgtgcc ggtggccggt ggtgtcgccg agcgcgccgg ctaccagaag
      241 cagcagcgcg gggcgaagcc gtttgccgcc agccccgatg atgtactcgg aaatctggtt
      301 gatcagcatc acttcggatg ccaggcgctg ccggatgacg cgattgacct gctgcatgtc
      361 ctcggcgata ggctcgagta cgttggcggc gtttggggag gaaatggcag tggacgacat
      421 gatcggcaat tagggtagtg ccgcgaatta taaggcgaat cggccgatag ccgcctctaa
      481 agacgcctcg gacgaaccgc acgggccgcc gcgacaagcc tgacgcgcgg cgtcgggcgg
      541 tgaaatcgca ataatggtgc gtgcgccgtg ctcgatccgg accgcggccg ctctcatttt
      601 tcgcgatgaa caagggtttt gacggagcgc ctaactctct gtataatcac gcgttttcgc
      661 gcacggtgtg cggaaaaatg aattcagagt gaggttctca atgtacgcgg tcataaaaac
      721 cggtggcaag cagtataagg ttgctgtcgg cgaaaaattg aaagtagaac agataccggc
      781 agacattgac gctgaaatca cgctcgacca ggttctcgca gtaggcgaag gtgaatcgat
      841 tcagttcggt gcaccgctgg tcagtggggc ttccgtcata gctaccgtcg tgtcccaggg
      901 tcgtcataag aaggttacga tcttcaagat gcgtcgccgg aagcactacc aaaagcacgc
      961 tggccatcgc cagaactaca ccgaattgcg tatcgacgct atcaacgctg cataagcgtt
     1021 gagtcgataa gctaaacggt caaggagcta ttaaatggca cacaaaaaag caggcgggtc
     1081 atcccgcaat ggtcgcgact ctgaatcaaa gcgcctcggc gtgaaggttt acggcggcca
     1141 ggcaatcaac gcaggcggca tcatcgtgcg tcagcgcggt acgcgcatgc acccgggcga
     1201 taacgtcggc atgggcaagg atcacacctt gttcgcgctg accgacggcc acgtcacgtt
     1261 ttcgacgaag ggcgcagcaa agaagcatct ggtcaacgta gtcccggctg cctaaggttt
     1321 atcaaggcac gggcttcagg accggaaaag gccccgcgaa gttcgcgggg ccttttttta
     1381 ttggccggtc ttcttgacgc ggccaagcag tgacatatat cgaatggcct agtggctggc
     1441 atcggccggt cgcggcagaa tagggcgtcg gctggagttg gctttttcaa ggcttgctcc
     1501 agtcgcccgc aaagtaaaac gggacggagc aactcatgaa gttcattgac gaagcgagaa
     1561 ttgaagtcat cgccggcgac ggaggggatg gcagcgcgtc gatgcggcgc gagaagtttg
     1621 tcccgttcgg cggaccggac ggcggtgacg gcggccgggg cggcagcgtg tacgcggtcg
     1681 cggaccgcaa tatcaacacg ctgatcgact accggtacgc gaagaaacat caggcgcgca
     1741 acggcgaaaa cggccgcggc gccgactgct acggcaaggg cggcgacgac atcattttgc
     1801 gcatgccggt cggcacgatc atcgcggaca cggaaacggg cgagttgatc gcggacctga
     1861 ccgagcacaa ccagagcgtg ttgatcgcgc acggcggtgc gggcggtctc ggcaacctgc
     1921 acttcaagtc gagtacgaac cgcgcgccgc gtcagaagac ggaaggcaag ccgggcgacc
     1981 g
//
LOCUS       DATGBK010001516         1850 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_133349, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001516 DATGBK010000000
VERSION     DATGBK010001516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133349"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1579
                     /locus_tag="VKJ77_21110"
     CDS             <1..1579
                     /locus_tag="VKJ77_21110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014194002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC47831.1"
                     /translation="PFIVFDDADLDSAVEGVVDAIWFNQGQVCCAGSRLLVQEGVEKR
                     FIDKLKRRMDTLRVGPSLDKGIDLGAIVDAVQLERIRALIERGVQEGCEIHQPKGLRM
                     PEQGAFYPPTLVTNVAPASTLAQEEIFGPVLVTMSFRTPDEAVALANHSRYGLAASVW
                     SETIGRALDIAPRLQCGVVWINATNLFDAGVGFGGYRESGFGREGGREGIYEYLKPRA
                     WTKLAVRSKPSEHVAQPSAFEAGTNVSALDRTAKLFIGGKQVRPDSGYSRLVHAPSGA
                     IVGEVGEGNRKDVRNAVAAARNAEKWSQASTHNRAQVLYYLAENLSARADEFAKQLVA
                     RTGVSAADAEREVEASITRLFTYGAWADRFDGAVHSPPLRGVALAMHEPLGVIGVVCP
                     DEAPLLGLVSLIAPALALGNRVVAVPSESCPMMATDFYQVVETSDVPAGALNIVTGER
                     KALASTLAKHDDVDALWCFGGADLSTLTERESVGNLKRTFVDYGRVFDWFDASSEGLP
                     FLRQAVQVKNIWIPYGD"
     gene            1660..>1850
                     /locus_tag="VKJ77_21115"
     CDS             1660..>1850
                     /locus_tag="VKJ77_21115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_function: GO:0048029 - monosaccharide binding [Evidence
                     IEA];
                     GO_process: GO:0005996 - monosaccharide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RbsD/FucU domain-containing protein"
                     /protein_id="HMC47832.1"
                     /translation="MLKNLDPLLNADVLHALCAMGHGDEVVICDANFPADSVARQTVL
                     GHVLRLDGVNAPRAIRAVLS"
BASE COUNT          347 a          510 c          622 g          371 t
ORIGIN      
        1 gccgttcatc gtattcgacg atgccgatct cgacagcgcg gtggaaggtg tcgtcgatgc
       61 gatctggttc aaccagggcc aggtctgctg cgcagggtcg cggctgctgg tgcaggaagg
      121 cgtggagaag cgcttcatcg ataaattgaa acgccgtatg gacacgctgc gcgtcgggcc
      181 atcgctcgat aaaggcattg atctgggcgc gattgtggac gcggtacagc ttgaacgcat
      241 tcgtgcgctc attgagcgcg gtgtgcagga aggctgcgag attcaccagc ccaaagggct
      301 tcggatgccc gagcaaggcg cgttctatcc gcccacgttg gtgacgaacg tcgcacccgc
      361 atcgacgctt gcgcaagagg aaatcttcgg accggtgctg gtgacaatga gctttcgcac
      421 gcctgacgaa gcggtcgcgc tggcgaatca ttcacgttat ggactggccg cgagcgtgtg
      481 gagcgagacc atcggccgcg cgctggatat cgcgccgcgc ctgcaatgcg gcgtggtctg
      541 gatcaacgcg accaatctct tcgatgccgg tgtcggcttc ggcgggtatc gcgaatcggg
      601 ctttggccgt gaaggcggac gcgaggggat ttacgagtat ctgaagccgc gtgcgtggac
      661 taagctggcc gttcgttcca agccttccga gcatgtcgcg cagccttccg ctttcgaagc
      721 gggcactaac gtcagcgcgc tcgaccgtac cgcgaagctg tttatcggcg gcaagcaggt
      781 tcggccggac agcggttact cgcggcttgt gcatgcgccg tcgggggcaa tcgtcggaga
      841 agtcggcgag ggtaatcgca aagatgtgcg taacgccgta gccgctgcgc gcaacgctga
      901 aaaatggtcg caagcgagca cgcataaccg cgctcaggta ctgtattacc tcgcggaaaa
      961 cctgtcggcg cgtgcggacg aattcgcgaa gcaactcgtc gcgcggactg gcgtttctgc
     1021 agccgatgcc gagcgtgaag tcgaagcatc gatcacgcgc ttgttcactt acggcgcgtg
     1081 ggccgacagg ttcgatggcg cggtgcattc gccgccgcta agaggcgttg cgctggcgat
     1141 gcacgaaccg cttggcgtga tcggcgtggt gtgtccggat gaagcgccgc tgctgggtct
     1201 cgtctcgttg atcgcaccgg cgcttgcgtt gggcaatcgc gtggtcgccg tgccgagcga
     1261 atcgtgtccg atgatggcaa ctgactttta tcaggtcgtc gagacgtcgg atgtgccggc
     1321 gggcgcattg aacattgtta ccggcgagcg taaagcgctt gcatcgacgt tggcgaaaca
     1381 tgacgatgtc gacgcattgt ggtgcttcgg cggcgcggat ttatcgacgc tgacagagcg
     1441 tgaatcggtg ggcaacctga agcgcacgtt cgtcgattac ggccgggtgt ttgactggtt
     1501 cgacgcttca agcgaaggcc tgccgttcct gcgtcaagcc gtgcaagtaa agaacatctg
     1561 gatcccgtac ggagattgaa ggtgagtccg ggttcaaatt agaatcatga gcgatgacct
     1621 cgcaacacag cgaggcacgc tcaacatgaa ggagacgtaa tgctgaagaa cctcgatccg
     1681 ctgctgaacg ccgacgtcct gcacgcgctg tgcgcaatgg gacacggcga tgaagtcgtg
     1741 atctgcgacg ccaattttcc ggccgattcc gtcgcgcgcc aaacggtgct tggccatgtg
     1801 cttcggctcg acggcgtgaa tgcgccgcgt gcgatccgcg cggtgttgtc
//
LOCUS       DATGBK010001517         1800 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_110555, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001517 DATGBK010000000
VERSION     DATGBK010001517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110555"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..748
                     /locus_tag="VKJ77_21120"
     CDS             <1..748
                     /locus_tag="VKJ77_21120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009909842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47833.1"
                     /translation="LRIQKVEASAARRRVDELLEMTELTAHADKPITELSGGQRQRVA
                     LARALAPRPRVLLLDEPLTALDARLRETLRAEMNALLRELRVTSIYVTHDQSEAMALA
                     DRIVVMSAGRIEQCGTPREIYYQPASRAVAQFIGTLNRVEGECRNDAFVTLGGTISVT
                     GLVAQLRARDGARSEIFFRPEDAVLVDPQSAQLRGAVESALFLGERTRLKIRDAAPDA
                     LIVDVPGRVELAQGTAVGISVRDEGWVALH"
     gene            795..1628
                     /locus_tag="VKJ77_21125"
     CDS             795..1628
                     /locus_tag="VKJ77_21125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009892018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HMC47834.1"
                     /translation="MLLAQITDLHIKLPGVLAYKKVDTAACLRACVERLNALSPRPDA
                     VLVTGDLVDFGTVDEYRHLATCLKPLEMPVYLMVGNHDDRAALREVFDAGYLHESGTG
                     SDFVQYAFDLQDMRIIALDSQKPQESPGTLCDARLAWLEHQLEAADGRPVIVALHHPP
                     FATGIGHMDDMALDAQAASKLAALISRYPNVERVLCGHVHRPVFKRFAGTIASIAPST
                     AHQVVLDLHVDAPSAFVLEPGAFALHYWTHDVGLVSHHEYVEQFDGPYPFFDDDGALV
                     D"
BASE COUNT          324 a          502 c          584 g          390 t
ORIGIN      
        1 cttgcgaatc cagaaggtcg aggcctcggc ggcgcgtcgc cgggtggatg aattgctgga
       61 gatgaccgag ctgacggcac atgccgacaa gccgatcacc gaattgtccg gcggacagcg
      121 ccagcgcgtt gcgctggctc gcgcactggc gccgaggccg cgagtattgt tgctcgatga
      181 accgctgact gcactcgatg cccgtctgcg cgagaccttg cgtgccgaga tgaacgcgtt
      241 actgcgcgaa cttcgcgtga ccagcatcta tgtcacgcat gaccaatccg aagcgatggc
      301 gcttgccgac cggatcgtgg tgatgagcgc cgggcgcatt gagcaatgcg gaacgccgcg
      361 cgagatttat taccagccgg cgagtcgcgc ggtggcgcaa ttcatcggta cattaaatcg
      421 ggtggagggc gagtgtcgta atgacgcatt cgtcacactt ggcggtacga ttagcgtgac
      481 gggactcgtt gcgcaattgc gtgcgcggga tggtgcgcgg tcggaaattt tcttccggcc
      541 ggaagatgct gtccttgtcg atccgcaatc tgcgcagctg cgcggcgcgg tggagtcggc
      601 gctgtttttg ggtgaacgta cccgcttgaa aatcagggac gcggcgccgg atgcattgat
      661 tgtcgatgtg cccggccgcg ttgaactggc gcagggaacg gcggtgggga tatcggtgcg
      721 cgacgaaggc tgggtcgcgc tgcattgatt cttcacgttc tctcgttcgc ctgaagccaa
      781 accaaggaga tgccatgctg ctcgctcaaa tcaccgattt gcatatcaag cttcccggtg
      841 tgctcgcgta taagaaagtc gataccgccg cgtgtctgcg tgcttgtgtc gaacggttga
      901 acgcgctgag tccgcgaccg gatgccgtgc tggtgacggg cgacctggtg gatttcggta
      961 ccgttgatga ataccggcat ctggcgacgt gtctgaaacc gttggaaatg ccggtgtatc
     1021 tgatggtcgg aaaccacgac gatcgcgcgg cattgcgcga agttttcgat gccggttatc
     1081 tgcacgaaag cggtacaggt agcgactttg tgcaatatgc gttcgatctg caagatatgc
     1141 ggatcatcgc gctggattcg cagaagccgc aggaaagccc gggcacgtta tgcgatgcgc
     1201 gtcttgcgtg gcttgaacat cagttggaag ccgctgacgg tcgtccggtg attgtcgcgt
     1261 tgcatcatcc gccgtttgct accggcatcg ggcatatgga cgacatggcg cttgacgcgc
     1321 aggccgcgtc gaaactcgcg gcgctgattt cgcggtatcc gaatgtggag cgtgttttgt
     1381 gcgggcatgt gcatcggccg gtgtttaagc gcttcgcggg aacgatcgct tctattgcgc
     1441 catcgaccgc gcatcaggtg gtgcttgatc tgcatgtcga cgcaccgtcg gcgttcgtgc
     1501 tcgagccggg ggcgtttgcc ttgcactatt ggacgcacga cgtggggctc gtgtcgcatc
     1561 atgaatacgt cgagcagttt gacggcccgt atccgttctt cgatgacgat ggggcgttgg
     1621 tggactaagg aattagctgg tcacttttcc cgccgtcaac ccgcccactt tcaccatcaa
     1681 cccactcgcg tcctcgcgat tgcgcacatc gagcgtagcc ccatgccgcc ccgcaatgct
     1741 cgaggcaatc gcgagtccaa gcccgctgcc cgacccctgc gcaccggtag cgcgataaaa
//
LOCUS       DATGBK010001518         2801 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_249093, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001518 DATGBK010000000
VERSION     DATGBK010001518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2801
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249093"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(480..698)
                     /locus_tag="VKJ77_21130"
     CDS             complement(480..698)
                     /locus_tag="VKJ77_21130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003262721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3820 family protein"
                     /protein_id="HMC47835.1"
                     /translation="MDPEDLQRLVTQKMPYGKYKDRLIADLPGHYLAWFAREGFPAGQ
                     LGRLLALMHEIDHNNLRELLTPLRGKRG"
     gene            846..2243
                     /locus_tag="VKJ77_21135"
     CDS             846..2243
                     /locus_tag="VKJ77_21135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47836.1"
                     /translation="MSLAIKAFVAPLIVACAMFMESVDANVIVTAIPEMDKAFGRDPV
                     TLKIAVTSYVLGLGVFIPICGWVADRFGARTIFRLAIGIFVAGSLLCAASTSLIPFTL
                     ARFVQGVGGAMMVPVGRIIIFRSVRRSEFIRAMNYLSLPAMFGPAVGPLLGGFITTYL
                     HWRLIFFINIPIGILGIYLTNRYIGNAREPHPGPLDWFGFFLSASGGTLFLLGLSLIG
                     GELVSNSTAAGMALAGVAFFVVYLLHSRRVKLPLLDLSFLRVPTFQASVVGGSLFRIG
                     LGAVPFLLPLAMQEGLGMSAFKSGSITCASAFGGMFMRSLASRVLHRFGFRQTLMVNA
                     ALSGIAIAACGMFYPGTPTWVIWAVVLLGGFFPALQFTSLNSLTYAEIESRDVGRATS
                     LGSFIQQVSLGLGVTVGGIALQISHDLQGHPQIVWSDFWPAFVVVGLFSFLSIPITAK
                     LARNAGHEISRGTRG"
BASE COUNT          491 a          900 c          792 g          618 t
ORIGIN      
        1 tgattgcttc gatgaaaacg tggagcgtct ctcgcgcgtt tctcacgcat ctctcatctt
       61 cgcgctgagc gtgaccgtgt gcgatcgccc ggttaagtgc tgctcgcgac tcgttcaaaa
      121 tcggatgagt caggcttcgg atcatgagct tcgactgagc ctcaaccgcc ccgcttcaac
      181 ccacttttca agtgcttccc gactctggaa aacccgttgc gctgagctcg cgatcacatg
      241 tgtcttgctg cgaaaaacga cacgctggcg cgtctcgttt ccatgtcgaa agtgtagcac
      301 tcgacgtcgt catcgcaaag gcaaaaccac aaaatattgg gtgtttcgag cctgtgacga
      361 ctacctatag tacaaacgaa tgcgtcatgc aagagcagat ttcaagcatg aaaacgcggc
      421 tgcgaggtca ctggacgtgc gcatgaatca cccggcagcg cccgcttgcg cgcggctttt
      481 caacctcgct tgccgcgcag cggcgtgagt aattcacgca agttgttgtg atcgatttcg
      541 tgcatcagcg caagcagccg gccgagttgt cctgcaggaa aaccctcacg tgcgaaccac
      601 gcaagatagt gaccgggcag gtccgcgatc aagcgatcct tgtactttcc atagggcatc
      661 ttctgcgtga cgagacgctg caaatcttcc gggtccatcg tcgttctcct cgggttttat
      721 cgtcgctgaa tgtcgctcag gcgtcgctcg agcgtcgctc atcacggcac ttcgcgatgt
      781 cgctgtcatg atatcgatgc cataatccca gcttcccgcc gcgaagagat ccccttccgt
      841 tctccatgtc gctagccatc aaagctttcg ttgcccccct catcgtcgcc tgcgcgatgt
      901 tcatggaaag cgtcgatgcc aacgtcatcg tcaccgcgat ccccgaaatg gacaaagctt
      961 ttggtcgtga tcccgtcacg ctgaagatcg ccgtcaccag ttacgtgctc ggcctagggg
     1021 tcttcatccc gatctgcggc tgggtcgccg accgcttcgg cgcgcgcacg atcttccgtc
     1081 tcgctatcgg catcttcgtc gccggctccc tcctgtgcgc ggcgtccacc tcgctgatcc
     1141 cgttcacgct cgcgcgtttc gtccagggcg taggcggcgc gatgatggtg ccggtcggcc
     1201 ggatcatcat cttccgctcg gtacgccgct ccgaattcat ccgcgcgatg aactacctct
     1261 cgctgcccgc catgttcggc cccgccgtgg ggccgctgct cggcgggttc atcaccacct
     1321 atctgcactg gcgcctgatc ttcttcatca acatcccgat cggcatcctt ggcatctacc
     1381 tgaccaaccg ctacatcggt aacgcccgcg agccgcatcc cggaccgctc gactggttcg
     1441 gtttcttttt atcggcgagc ggcggcacat tgtttctgct cgggctctcg ctgatcggcg
     1501 gcgagttggt ctccaattcc acagccgcgg gcatggcgct cgccggcgta gccttcttcg
     1561 tcgtgtattt gctgcactcg cgacgcgtga aactgccact cctcgatctg agcttcctgc
     1621 gcgtgccgac ctttcaggcg agcgtcgtgg gcgggtcgct gtttcgcatc ggcttgggcg
     1681 cggtgccctt cctgctcccg ctcgcgatgc aggaaggcct cggcatgagc gccttcaagt
     1741 ccggctcgat cacctgtgcg tcggcgttcg gcggcatgtt catgcgctcg ctcgcgtcgc
     1801 gcgtgctgca ccggttcggc ttccggcaga cgctgatggt caacgcggcg ctgtcaggca
     1861 tcgcgatcgc cgcctgtggc atgttctatc cgggcacgcc gacttgggtc atctgggccg
     1921 tcgtgctgct cggcggcttt ttcccggcgt tgcaattcac gagtctcaac tcgctgacgt
     1981 atgccgagat cgaaagccgc gatgtgggcc gcgcgacgag tctcgggagt tttatccagc
     2041 aggtgtcgct ggggttgggc gtgacggtgg gcggaatcgc gctgcaaatt tcgcatgacc
     2101 tgcagggaca tccgcagatc gtctggtcgg atttctggcc ggcgttcgtc gtcgtcggat
     2161 tgttttcgtt tctttcgatt ccgattaccg cgaagttggc acggaacgcg gggcatgaga
     2221 tatcgagggg aacgcggggc taacgcggac gcacggcgtc tcggaacagc ggtgacgata
     2281 catagtggaa aaccagcgct ggattcgcca gcccggtctg ttatcgaaaa agccgatgcg
     2341 tcttcggtac ccgcatcgga tttcaaacgc tccgacgctt ctaaactcgg caagcgtaaa
     2401 tagaaacggc tcgctccgaa tctggccgct caagctgatt gtggaaaggg caaccgctcg
     2461 ggaccgcgac tcaaatttca aacgctgcag ctaccggaac tcagcgagcg caaataaaaa
     2521 aagaccggtt ccgaacctgc cgctccttcc gttgctgaag gaacagccgc ctcgtaccgg
     2581 cctcgactct caaacactag ctggggtgac aggccgattg caccggccag tcacccacca
     2641 tcctcttact ggcaagcctc gcactcgtcg aacccggcat cgcccggacg catcatgcag
     2701 accggaccat cggcctctgc ttcggccgca gcggcaattg ccggtgccgc aaccgcagcg
     2761 gcgttgaaac cacccgtcga cgacccatgc gaaccctgcg a
//
LOCUS       DATGBK010001519         1606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_110578, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001519 DATGBK010000000
VERSION     DATGBK010001519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110578"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..937
                     /locus_tag="VKJ77_21140"
     CDS             <1..937
                     /locus_tag="VKJ77_21140"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HMC47837.1"
                     /translation="TTGRGIGPAYEDKVGRRGLRVQDLYDREVFAERLRETLDFHNFV
                     LTGYLGAAAVDYQETLDTMFGYAERLAPMVTDVSRRLYDENHAGRNLLFEGAQGTLLD
                     VDHGTYPYVTSSNCVAGAATAGAGVGPQKLNYILGITKAYCTRVGAGPFPSELYDADN
                     ANRQEQVGLTLATVGKEFGSVTGRPRRTGWLDAAALRRSIQINGISGLCMTKLDVLDG
                     LEEVKLCVGYKLDGKDVDILPRGASEVARCEPVYETFGGWKESTIGITQWDSLPANAR
                     QYLSRIQEVAGVPIDMVSTGPDRDETILLRHPFKV"
     gene            1041..1601
                     /locus_tag="VKJ77_21145"
     CDS             1041..1601
                     /locus_tag="VKJ77_21145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HMC47838.1"
                     /translation="MIAMKDPRNDDRNLWVGWDEYHRLIELLALAVHDSGWKFDNILC
                     LARGGLRVGDQLSRIYDLPLAILATSSYREAAGTEQGTLDIGQYITMTRGELSGNVLL
                     VDDLVDSGVTLSRVQQHLKDRYPAVTSVRSAVLWYKGCSKVKPDYHVQFLETNPWIHQ
                     PFEEWDTVRPHNLGAWIKRGVQDERS"
BASE COUNT          313 a          488 c          504 g          301 t
ORIGIN      
        1 taccaccgga cgcggtatcg gcccggcgta tgaagacaag gtcggtcgcc gcggcttgcg
       61 cgtgcaggat ctgtacgacc gcgaagtgtt cgctgagcgt ctgcgcgaaa ccctcgattt
      121 ccacaatttc gtgctgaccg gttatctcgg cgccgctgcc gtggattatc aggaaacgct
      181 cgacaccatg ttcggctacg ccgagcgcct cgcgcccatg gtgaccgacg tctcgcgccg
      241 tctttatgac gaaaaccacg ctggccgcaa cctgctgttc gaaggtgcgc aaggcacgct
      301 gctcgacgtc gatcacggca cctacccgta cgtcacatcg agcaattgcg tggcgggtgc
      361 ggcgactgcc ggcgcgggcg tgggtccgca aaagctcaac tacatcctcg gcattacgaa
      421 agcgtattgc acgcgcgtgg gcgcaggccc gttcccgagc gagctgtacg acgccgacaa
      481 cgccaatcgc caggagcagg ttggcctgac gctcgcgacc gtcggcaagg aattcggctc
      541 ggtgaccggc cgtccgcgcc gtaccggctg gcttgacgcc gccgcgctgc gccgctcgat
      601 ccagatcaac ggcatctcgg gcttgtgcat gacgaagctc gacgtgctcg acggtctgga
      661 agaggtgaag ctgtgcgtgg gctacaagct cgatggcaag gatgtcgata tcctgccgcg
      721 cggtgcgtcg gaagtcgcgc gttgcgagcc ggtgtacgaa acgttcggcg gctggaagga
      781 aagcaccatc ggcatcacgc aatgggacag cttgccggcc aatgcgcgtc agtacctgtc
      841 gcgtatccag gaagtggcgg gcgtgcctat cgacatggtg tcgaccggtc cggaccgcga
      901 cgaaaccatc ctgctgcgtc atccgttcaa ggtttaagta gaccggacgt gtagcatcga
      961 ccaaagtggc cgcgaatcag cggccacttt tgcatattca acagacgtac agtgctgtac
     1021 atatttaaaa gagtttcacc atgatcgcga tgaaagatcc gcgcaacgac gaccggaacc
     1081 tgtgggtagg ctgggacgaa tatcaccggc tgatcgaact gctcgcgctc gccgtgcacg
     1141 actcgggctg gaagttcgac aatatcctgt gtctcgcacg cggcggcctg cgggtcggtg
     1201 accagctttc gcgcatttat gacctgccgc ttgccatcct ggcgacgagt tcgtatcgcg
     1261 aggcggccgg cacggagcag ggcacgctcg atatcgggca atacatcacc atgacgcgcg
     1321 gcgagctgtc cggcaacgtg ctgctcgtgg atgacctggt cgactccggc gtgacgcttt
     1381 cgcgcgtgca gcagcacctg aaagaccgtt atcctgcggt cacgtcggtg cgttccgccg
     1441 tgctttggta caagggctgc tccaaagtga agcccgacta ccatgtgcag tttctcgaaa
     1501 cgaacccgtg gattcatcaa ccattcgaag aatgggacac ggtccggccg cacaacctcg
     1561 gtgcgtggat caagcgcggt gtccaggacg agcgcagctg attcaa
//
LOCUS       DATGBK010001520         1631 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_133388, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001520 DATGBK010000000
VERSION     DATGBK010001520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133388"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..247
                     /locus_tag="VKJ77_21150"
     CDS             <1..247
                     /locus_tag="VKJ77_21150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HMC47839.1"
                     /translation="DSLLRPVLIRRGVNLSMLLILAGVLGGMFAFGIVGLFVGPVILA
                     VASTLLEAWMNEPPPVVVVDVAEANRVTTSENPKNFS"
     gene            complement(359..682)
                     /locus_tag="VKJ77_21155"
     CDS             complement(359..682)
                     /locus_tag="VKJ77_21155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014006339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone modulator CbpM"
                     /protein_id="HMC47840.1"
                     /translation="MSTPLSESVWLNDVDVCQVEYLAEVSGLSIEEIEDLIDTDVIKP
                     VDTGTPTRMFQLRYVVTVKTARRLRDDFELDQRGLALALSLLQRIDELQAEIHATKAR
                     LGHPR"
     gene            complement(694..>1631)
                     /locus_tag="VKJ77_21160"
     CDS             complement(694..>1631)
                     /locus_tag="VKJ77_21160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019140981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DnaJ C-terminal domain-containing protein"
                     /protein_id="HMC47841.1"
                     /translation="FKDYYEALGVDRTATLADIKKAYRKLAHKYHPDVSADPESEAKF
                     KDVAEAYATLKNPEKREAYDNLGKHPAGESFTPPPDWQQHFHTGEAGLDDVDLADLFS
                     AFGRSGGGSSGGGHRRQSFPMPGQDYEIAAPVTLEQIHRGDEIELSAELPEYDANGLA
                     HRVPRTFRITIPKSAANGQRLRLAGKGGPGFNGGRPGDLYVSLVLQQHPLYRPDGRDL
                     YLDLPLAPWEAVLGASVHVPTLAGTVELNVKPGTTAGQKLRLAKRGLASADGNVGALY
                     AVVRIEVPKTVSAHEHELLEQLAAASNFNPRKHFA"
BASE COUNT          276 a          490 c          495 g          370 t
ORIGIN      
        1 cgacagtttg ctgcggccgg tgctgatcag gcgtggggtg aatctctcga tgctgctgat
       61 cctggccggc gtgctgggcg gcatgttcgc gtttgggata gtcggtttgt tcgtcggccc
      121 ggtgattctg gcggtggcgt cgacgctgct ggaagcgtgg atgaacgaac ctccgcccgt
      181 ggtcgttgtc gacgttgcgg aagctaatcg agtgacgacg tcggaaaatc cgaagaactt
      241 ctcctaacgc agcagtcgca tgagggtcct tcccgctgcg atgtgccggt tcatggctag
      301 tagcgtccgc tatccgccgt gaacccgacc cacctcgtaa cagcgcgtct ctacgcgatc
      361 atcgcgggtg tccgagccgc gctttcgttg cgtgtatttc ggcttgcagt tcatctatgc
      421 gttgcaacaa cgacagcgcc agcgcaagac ctcgctggtc gagttcgaaa tcgtcgcgca
      481 gccgtcgtgc cgtcttcacg gtcacgacgt aacgcaactg gaacatgcgc gtgggtgtgc
      541 cagtgtccac cggcttgatg acgtcggtat caatgaggtc ttcaatttct tcaatcgata
      601 accccgagac ctccgccaga tattcaacct ggcaaacgtc cacgtcgtta agccagaccg
      661 actcgctcaa tggtgtgctc atggctttgc tccttacgcg aaatgtttgc gcgggttgaa
      721 gttcgatgcc gccgccagtt gttccagcaa ctcatgttca tgagcgctta ccgtcttcgg
      781 cacttctatc ctgaccacgg catacagcgc cccgacgttg ccatcggccg atgccagtcc
      841 gcgtttggcg agccgcaatt tttgcccggc ggtcgtacca ggtttcacgt tgagttccac
      901 tgtgccagca agtgtgggta cgtggacgct cgcccccaac acggcttccc agggcgcaag
      961 cggcaggtcc agatacaggt cgcggccatc gggccgatag aggggatgct gctgcaatac
     1021 aagcgacaca tacaggtcgc cgggccgtcc gccattgaac cccgggccgc ccttgccggc
     1081 taatcgcagg cgctgaccgt tcgccgccga tttgggaatg gtgattcgaa aggtccgcgg
     1141 cacgcgatgc gcgaggccat tcgcgtcgta ctcgggaagc tccgcgctca gctcgatctc
     1201 gtctccgcga tggatctgct caagcgttac cggcgcggcg atctcgtagt cctgcccggg
     1261 catcggaaag ctttgcctgc gatgaccacc cccgctgcta ccgccgccgc tgcggccaaa
     1321 agctgagaaa agatcggcga ggtcgacgtc gtcgagaccg gcttctcccg tatggaaatg
     1381 ctgctgccag tcgggtggcg gcgtgaacga ttcgccggcc ggatgtttgc cgaggttgtc
     1441 gtaagcttcg cgtttttccg ggttcttcag cgtcgcatac gcttcggcga cgtccttgaa
     1501 tttcgcttcg ctttccgggt cggccgagac atcgggatga tatttgtgcg cgagcttgcg
     1561 gtaggccttc ttgatatccg cgagtgtcgc ggtgcgatcg actcccaagg cttcgtaata
     1621 gtccttgaat t
//
LOCUS       DATGBK010001521         4374 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_295597, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001521 DATGBK010000000
VERSION     DATGBK010001521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4374
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295597"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..394
                     /locus_tag="VKJ77_21165"
     CDS             <1..394
                     /locus_tag="VKJ77_21165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase"
                     /protein_id="HMC47842.1"
                     /translation="FTLDTVREASVSLRIEGADDGFVLDGISHMREISRDPADLVAQT
                     HGAHHQYPDGFMLFLGTMFSPIKDRDTPGGGFTHHLGDVVTISTPSLGAIVNTVRLST
                     EITPWTFGVRALYGNLAARGMLGSTRTS"
     gene            complement(488..961)
                     /locus_tag="VKJ77_21170"
     CDS             complement(488..961)
                     /locus_tag="VKJ77_21170"
                     /inference="COORDINATES: protein motif:HMM:NF037081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HMC47843.1"
                     /translation="MTLRFIALYCGRLSEIADAGRTKPGTNPQQIRTKTDLPPACVSG
                     KVTLPPCNSHGQCVVPIFEKTEMNKQELVDAVASATGTSKAAAAEAIDAFISTVTQAV
                     VSGDSVQFVGFGTFSTGARAARTGRNPKTGDTIQIAAAKTVKFTAGKAFKDLVNQ"
     gene            1123..2501
                     /locus_tag="VKJ77_21175"
                     /pseudo
     CDS             1123..2501
                     /locus_tag="VKJ77_21175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009239866.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
     gene            2906..4336
                     /locus_tag="VKJ77_21180"
     CDS             2906..4336
                     /locus_tag="VKJ77_21180"
                     /inference="COORDINATES: protein motif:HMM:NF024846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HMC47844.1"
                     /translation="MSTLLNTPGHIPLNIVVIGGGFTGVAFVIHAIRACPAGVDLDFT
                     IVEPSAELGRGIAYGTSDPLHRINVPSDRMSLFAGDSTHATRWLKEHDAIDAGSSDGQ
                     GSYYVSRARYGEYVAATLNDVVAEAASHVRVRHRRATATGVRKIDSGFAVTLDDGSHL
                     DAHRVALCFGHTPSKPPGVIDEQAVHDPRLITHPWATDAVRAIPRDASVLLVGTGLTM
                     ADVAVTLIERGHTGRITAISRRGLRAQPHGLFSDAADFLGNTAPPASARELVRLLRQR
                     IARDGARIGWQPAADALRFDLPRIWNALPAREQGRVVKRLLPFWDVHRFRIAPQIHTA
                     IERAIESGQMSVATAGIVGISRVAEHLSASLRRPGGTHEEHDFDAVVFCTGPARDIDR
                     NPLVKSLLEGGLARLDAVRIGLDTDLRSQLRNADGEVSPGLLAFGPMTRGSFGEMTGA
                     PDIARHLERVLKDGSLLAYTSTSTSR"
BASE COUNT          848 a         1284 c         1327 g          915 t
ORIGIN      
        1 gttcacgctc gacacggtac gcgaggcaag cgtgtcgctg cgcattgaag gcgcggacga
       61 tgggtttgta ctggacggca tcagccacat gcgcgagatc agccgcgatc cggccgacct
      121 ggttgcgcag acgcatggcg cgcatcatca gtatccggac ggcttcatgt tgtttctcgg
      181 cacgatgttc tcgccgatca aggatcgtga cacgcccggc ggcggcttca cgcatcatct
      241 gggcgacgtg gtgaccatct ctacgccatc gctgggcgcg atcgtgaaca ccgtgcgttt
      301 atcgacggaa attacgccct ggacgttcgg ggtacgtgcg ctttatggca acctggcggc
      361 gcgcggcatg cttgggagca cgcgcacttc ctgaagctgg atcgatacgg cagattcgtc
      421 tgacaaaact aatcaccgct cgactgcgtc cttgcccgga aacgctgcaa ggacgcatcc
      481 gtcattctta ctgattgacg agatctttga acgctttgcc ggccgtgaac ttgaccgtct
      541 ttgcggcagc gatctggatg gtgtcgccgg tcttcggatt gcggcccgta cgcgcggcgc
      601 gtgcgccggt gctgaaggtg ccgaaaccga cgaactgaac gctgtcgccg ctgactacgg
      661 cttgcgtgac agtagaaata aatgcatcga tagcttcagc agccgcggct ttgctcgtgc
      721 cggtggcgga cgccacggcg tcaacgagtt cttgcttgtt catttctgtt ttctcaaaga
      781 tgggtacaac gcactgccca tgcgagttgc atggcggaag cgtcacctta ccggacacgc
      841 acgctggagg caaatccgtt ttcgttcgaa tttgttgcgg gtttgtccct ggtttcgttc
      901 tcccggcgtc tgcgatttcg ctcaaccggc cgcaatatag cgcgataaat cgcagtgtca
      961 tggaatgcaa atgcgaattc aatagttcgc aacgcactga agctgtgtaa gcattcttgc
     1021 tgccttcgtc gttgaaacgc ggccaaaaca gctttatata ggcagttttc gtagccttcg
     1081 ttcgctcccc ttcttccgcc ctgcccctcg cgtgccactc ccatgagcaa gaaaaagatc
     1141 ctcctgaacg cgttcaacat gaactgtgtc ggccatatca atcatggttt atggacacat
     1201 ccgcgtgacc agtccgaaga ttaccgaaag ctttcatact ggacggatct tgcgaaattg
     1261 cttgaacgcg ggttgttcga cggacttttt attgcggata tcgtgggggc gtatgacgtt
     1321 tatcaggcgt cggtcgacct gacgctgaag gaatccatac agttaccggt caacgatccg
     1381 ctgatgctgg tgtccgccat ggcggccgtc acgcaacatc ttggtttcgg cgtcacggtg
     1441 aacctgactt acgaagcacc ctatcttctg gcacgacgtt tttccacgct cgatcatctg
     1501 accgaggggc ggattggctg gaacatcgtg accggttatc tagatagcgc cgcgcgcgcg
     1561 atgggtctca ccgagcagat tgcccacgac gaacgttatg accgcgccga cgaatacctc
     1621 gacatcacgt acaagctctg ggaaggcagt tggaagacga cgctgtcgtg cgtgaccgca
     1681 gtacacgcgt gttcgcggat ccgcagaaga tccacaaggt caaccatcac ggccgctact
     1741 acgacgtaga gggttatcac ttgtccgagc cctcgccgca acgcacgccg gtgttgttcc
     1801 aggcgggttc gtcgggacgg gggcaggcgt ttgcgatccg tcatgccgag tgcgtgttcg
     1861 tatcgagcca gagcaaggaa ggtacacgca aactcgtcga tgcgctacgc aagcaagcag
     1921 ccgaggctgg ccgggaccct gccagtctca aggtgttcat gggtattacc gtcgtggtgg
     1981 ggcgcactac ggccgaagcc gaggagaagt tcgccgagta cgcgaaccat gcgagcgccg
     2041 aagcgggact ggcgcacttt gcggcaggca gtggtatcga ttattcgaag gtcggtctcg
     2101 acgacgaact tgaaccgccg ggcggtcaca agagccgcgg catagagtcg tcggtgcagc
     2161 gcgtgacgga cgggcaatcc ggttggaccg tgcggcgcct gctcgatcag ttgaaactcg
     2221 gcggccggtt taccacgatc gtcggcgatc cggtgcaagt ggctgacgcg ctggagtcgt
     2281 ggatggatga aaccggcgtc gacggtttta atctgacgcg taccgtgacg cccgaaagtt
     2341 acgaggactt catcgacctc gtgattcccg aattgcaggc acgcggtgtg tacaagactg
     2401 cttacgccga cggaaccctg cgcgagaagt tattcaaccg cggcgcgaag ttgccggacg
     2461 agcatacagg cgcttcgttt cgccgggacc gcgcgaagtg aggacggcaa tctggccttt
     2521 gcactgcgcc gacatgattg acgtcatatc gtgtcccagc agtctgggac ctgcgcgttc
     2581 gaaaacataa gggacgttct gttcaagtat ttgctttgtt catctttcat gaacgcacca
     2641 aaaaaattga acatactccg tcgtccgtca tcgatggtgg tagtgaacct ggtcctacgc
     2701 ttcggcctaa tccttagtca tccaatgcaa actgccaagc tgccctcagc ccgtcttccg
     2761 ctgagatggc agtgccgcca ggctcgcagc agatcaaatc cgccccggtt tcaatcccgc
     2821 caatcctcac aagcttagcg aatttcaagc tttacagagc gttcacccgg cgtattggct
     2881 gaggtatcct cgacgcttca gcatcatgag cactctcttg aatactcccg gacacatccc
     2941 gttgaacatc gtcgtgatcg gtggcggctt caccggcgtc gcattcgtta ttcatgccat
     3001 ccgtgcctgc ccggctggcg tcgatctcga cttcactatt gtagaaccat cggcggaact
     3061 cggccggggt atcgcctatg gaacgtcgga cccgctgcat cggatcaacg taccgagcga
     3121 ccggatgagc ctgttcgccg gcgactccac gcacgccacg cgctggctca aggagcacga
     3181 cgcaatagat gccggcagca gcgacggcca gggcagctac tacgtgtcac gtgcacgata
     3241 cggagagtat gttgccgcga ccttgaacga tgttgtggcc gaggccgcct cgcatgtgcg
     3301 cgtgaggcat cggcgagcca ccgcgaccgg cgtgcgtaag attgattcag gttttgcggt
     3361 cacgcttgac gacggttcgc atctggatgc gcatcgcgtt gcgttgtgct ttggccatac
     3421 gccttcgaaa ccaccgggcg tcatcgatga acaggcggtg cacgatcccc ggctgatcac
     3481 acatccatgg gcaacggacg cagtgcgcgc gatcccgcgg gacgcgtccg tgctgctggt
     3541 cggcactggc ctgacgatgg cggacgtggc cgtcacgttg atcgagcggg ggcatacggg
     3601 acgcatcacg gcaatttcgc gacggggttt gcgcgcccag ccgcatggac ttttctccga
     3661 tgccgccgat tttctcggca acaccgcgcc gcccgccagc gcccgtgaac tcgtgcgcct
     3721 gctcaggcaa aggatcgcgc gcgacggcgc ccggatcggc tggcaacccg ccgccgacgc
     3781 cttgcgtttc gatcttcccc ggatctggaa cgcgttgcct gcacgcgaac aaggtcgggt
     3841 ggtgaaaagg ctgttgccgt tctgggacgt gcatcgcttt cgcatcgcgc cgcaaattca
     3901 tactgctatc gagcgggcaa tcgagagcgg tcagatgagc gttgccacgg cgggcatcgt
     3961 agggatcagt cgcgtggcgg agcacttgag cgccagcctg cgacgtccgg gcggcacgca
     4021 tgaagagcac gatttcgacg cggtggtttt ctgcacggga ccagcacgcg atatcgaccg
     4081 gaatccgctt gtgaagtcgc tgttggaggg tgggctcgcg cggctggatg cggtgcggat
     4141 cggactcgac accgacctcc gaagccagct caggaatgcg gacggcgagg tgtcgccggg
     4201 attgctggcc ttcggcccga tgacacgcgg aagcttcggc gaaatgaccg gcgcacccga
     4261 catcgcccgt catctcgaac gggtgctcaa ggatggcagc ctgcttgcgt atacgtcgac
     4321 atcgacatcg cgttgacgtg tgcgcgtagc tacatgcatc aatccggctc cgat
//
LOCUS       DATGBK010001522         1954 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_41583, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001522 DATGBK010000000
VERSION     DATGBK010001522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41583"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1215
                     /locus_tag="VKJ77_21185"
     CDS             <1..1215
                     /locus_tag="VKJ77_21185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HMC47845.1"
                     /translation="NGSLTFVGRKPRPLLSGELVSNLLQFSDLAPIIGADSNASKAKR
                     GDTEKQPSSKALPTEEFKTDRWKAIDADVKFTGRKIIKDPELPITNLYTHVVMTDGVL
                     SFEPLSFGVAGGTLSSNIQLDGSTEPLQGRFSTSARHLKLKELLPTVKTMQSALGEVN
                     GDAALSATGNSPAALAGTMNGEVKTLITDGTVSRLYMEAAGLNVANAVYEKLFGKHDV
                     KINCAAADFVATNGVLESRVFALDTDDAVINMDGTINLKTEEMDLNIHPHTKGFRVFS
                     LRSPLYVKGTFKDPHVGVNAGALAVRGAAAVGLGLLNPFAALIPLIAPSNNKPLPCTQ
                     MLADMRTAPSAPPPGQKQSAKGAPGYMEPGVANPAAASAPSSSNRAKGASGVPARPAV
                     STPASAALYRGS"
     gene            1430..1702
                     /locus_tag="VKJ77_21190"
     CDS             1430..1702
                     /locus_tag="VKJ77_21190"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HMC47846.1"
                     /translation="MTRKYTDSISNFERVATELRALRRERRMSQQTLADRAGVSRRTI
                     TNAEGAQNVGLHELCRIANALGYDLTLRPKDTVVFEDLDFFFREDE"
     gene            1699..>1954
                     /locus_tag="VKJ77_21195"
     CDS             1699..>1954
                     /locus_tag="VKJ77_21195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006682202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA N-terminal domain-containing protein"
                     /protein_id="HMC47847.1"
                     /translation="MSTSSLKPAPPFDLEELFDKIRRLDVHTPQGMAGLLAKESTFVF
                     NYGEVEPDAAVSLTMPVRRKSYSSGALMNVFAMNRPEGYLR"
BASE COUNT          409 a          562 c          622 g          361 t
ORIGIN      
        1 aacggttcgc tgacgttcgt gggtcgcaag ccgcggccct tgctctcggg cgaactcgtg
       61 tcgaacctgc ttcagttctc cgatctcgcc ccgatcatcg gcgccgattc aaacgccagt
      121 aaggcgaaac gtggcgacac ggagaaacag ccgtcgtcga aggcgctgcc gaccgaggag
      181 ttcaagacgg atcgatggaa agcgatcgat gccgatgtga agttcaccgg ccgcaagatc
      241 atcaaggacc cggagctacc gatcaccaac ctctatacgc acgtggtgat gacggacggc
      301 gtgctgtcgt tcgaaccatt gtcgttcggc gtggcgggcg ggacgctatc gtcgaatatc
      361 cagctcgatg gcagtacgga gccgctccaa ggccgcttct cgacctcggc gcggcatcta
      421 aagctcaagg agttgctgcc gaccgtcaag acgatgcagt cggcgctggg tgaagtgaac
      481 ggggatgcgg cgttatcggc gacgggcaat tcgcccgccg cgctcgccgg aaccatgaac
      541 ggcgaggtca agacgctgat cacggacggc acggtcagcc ggctgtatat ggaagcggcg
      601 gggctgaacg tggcgaacgc ggtctatgaa aagctcttcg gcaaacacga tgtgaagatc
      661 aactgcgcgg cggcggattt tgtcgcgact aatggcgtgc tggagtcgcg cgtgtttgcc
      721 ctcgataccg acgacgccgt gatcaacatg gacggcacca tcaatctgaa gacggaggag
      781 atggacctga acattcatcc gcacacgaag ggtttccggg tgttctcgct gcgctcgccg
      841 ctgtacgtga aggggacgtt caaggacccg catgtaggcg tgaatgccgg tgcgctggcg
      901 gtacgcggcg cggcggcggt cgggctcggt ctgcttaacc cgtttgccgc gctgatcccg
      961 ttgatcgcgc cgagtaacaa caaaccgctg ccgtgcacgc agatgcttgc cgacatgcgc
     1021 accgcgccgt ccgcaccacc gccgggacag aagcaaagtg cgaagggggc acccgggtat
     1081 atggaaccgg gggtggcgaa tccggcggct gcgtcggctc cgtcgtcgtc caacagggcg
     1141 aagggtgcaa gtggtgttcc ggcccggccg gcggtgtcca cgccggccag tgcggcgctt
     1201 tatcgcggga gctgatagcc ggtgacggag ttgggcaggt ggcgcgatga attatggtgc
     1261 agccccattt tttaatgaaa atttgcgcgt ttaaacgcgc atttccttat gcatgagcga
     1321 aattgcgcat cataatgcgc aattcatcgc aatcaatcgg taggaaattg gtcgattaaa
     1381 atgcgcatca tgttgcgcaa aatacaaaaa aaacatacaa ttgcgcatca tgacgcgcaa
     1441 atatacggac tccatcagca atttcgagcg tgtggcaacg gagctccgcg cgctccgccg
     1501 tgagcggcgc atgagtcagc agacgctggc tgatcgcgcg ggcgtgtccc ggcgcacaat
     1561 cacgaatgcg gaaggcgcac agaacgtcgg ccttcatgag ctttgccgga tcgccaacgc
     1621 gctcggctac gacctcacac tgcgtccgaa agacactgtg gtcttcgaag atctggactt
     1681 cttcttcagg gaggacgaat gagcacgtcg tcgcttaagc ctgcgccgcc gttcgacctg
     1741 gaagagcttt tcgacaaaat ccgccggctc gacgttcaca ccccccaggg catggccggt
     1801 ctgctggcga aggagagcac cttcgtcttc aactacggcg aagtcgagcc ggacgcggcc
     1861 gtgtcgctga ccatgcctgt gcgccgcaag agctacagca gcggcgcgct gatgaacgtg
     1921 ttcgcaatga atcgcccgga aggttacttg cgat
//
LOCUS       DATGBK010001523         2197 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_295620, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001523 DATGBK010000000
VERSION     DATGBK010001523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295620"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /locus_tag="VKJ77_21200"
     CDS             complement(<1..383)
                     /locus_tag="VKJ77_21200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC47848.1"
                     /translation="MSTLNAGEVKAPRRARGHARVAALLEAASAEFAERGYEATTMTA
                     IAARAGASIGSLYQFFPTKEQVAATLMEQYVAEVEAVFDRLSEEAPSLDISDVAGRLT
                     TLFVAYRTTHPAFVVLADVQDVVLPG"
     gene            467..1048
                     /locus_tag="VKJ77_21205"
     CDS             467..1048
                     /locus_tag="VKJ77_21205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003269808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HMC47849.1"
                     /translation="MLQKLDPKTTALVLIDLQQGILGFGKAPRPAEAVLATAATLAKR
                     FREVDAPVVLVRVGWSADFGDALKQSVDQPIVLPAGGLPSNWWDFPAELAVEERDIKI
                     TKRQWSAFYGTELDLQLRRRGIETIVLGGISTNIGVESTARAAHEHGYSLVLVEDAMS
                     CAAPEHHDASLNYIFPRLGLVRQSVDVLEALAG"
     gene            1090..1626
                     /locus_tag="VKJ77_21210"
     CDS             1090..1626
                     /locus_tag="VKJ77_21210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47850.1"
                     /translation="MSIERHAGASSLRRRIETVFDARALGRAMFALVPLLLLTLVSGR
                     SEWLTAAIVPVAMLIALDHSQLAPLGVFAHALAISAGFVILMASLAHPLLFVVATVLL
                     GMGSVRERLTQRGLRDLPANSHKAIACHTGMSWRAVVFSASRNQFSYRFNMDTRNLKY
                     FLAVADAGSITHAADCLN"
     gene            1623..2129
                     /locus_tag="VKJ77_21215"
                     /pseudo
     CDS             1623..2129
                     /locus_tag="VKJ77_21215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004552604.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT          383 a          701 c          659 g          454 t
ORIGIN      
        1 ccgggcagca ccacatcctg cacatcggcc agcacgacga aagcaggatg cgtcgtgcgg
       61 tacgccacga acagcgtcgt cagccggccc gcaacatccg atatgtcaag cgacggcgcc
      121 tcctcgctca gccggtcgaa cacagcctcg acctcagcaa cgtattgctc catcagcgta
      181 gccgcgacct gctctttcgt cggaaagaac tggtaaagcg aaccgatcga cgcccccgcc
      241 cgcgcggcga tcgctgtcat cgttgttgct tcgtaccctc tttccgcgaa ttccgcgctt
      301 gccgcttcca gcaaagccgc aacccgcgca tgaccacgcg cgcgacgcgg cgccttcacc
      361 tcgcccgcat ttagtgttga catttgtgag tcaatcctca tatactgttt gtgagtatcc
      421 cctcataata caccaaccgg ctaaccactt tcaacggaag accatcatgt tgcagaaact
      481 tgaccccaag actaccgctc tcgttctgat cgatcttcag cagggcattc tcggattcgg
      541 gaaagcaccc cgccccgccg aagccgtgct ggctaccgcg gctacgctcg caaagcgctt
      601 ccgggaagtc gatgcgccgg ttgtcctggt ccgggtgggc tggagcgccg acttcggcga
      661 tgcactgaag cagtccgttg atcagcccat tgtgcttccc gccggcggac tgccctcgaa
      721 ctggtgggac ttccccgccg aactggcggt ggaggagcgt gacatcaaga tcacgaaacg
      781 ccaatggagc gccttctacg gcaccgagct cgacctgcaa ttgcggcgtc gcggcatcga
      841 aaccattgtg ctcggcggga tttcgacgaa catcggcgtc gagtcgacgg ctcgcgccgc
      901 gcacgagcat gggtactcgc tggtgctcgt cgaggacgca atgagctgcg ccgcgcccga
      961 gcatcatgat gcgtcgctga attacatctt cccgaggctc ggtcttgtgc ggcaatccgt
     1021 cgacgtactc gaggcgctcg caggctgatg acgaccgatg gacaagcaca gcgtggcggg
     1081 aaagcgacga tgagcatcga acgtcacgcc ggagcttcgt cgctccgtcg ccgcatcgaa
     1141 accgtgttcg acgcgcgggc gttgggtcgc gccatgtttg cgctcgtccc gctgctcttg
     1201 cttacactcg tatccggcag atccgagtgg ctcaccgctg caatcgtgcc ggtcgcgatg
     1261 ctcatcgcac tcgaccactc gcagcttgcg ccgcttggcg tcttcgcgca cgctctggcg
     1321 atcagcgcgg gcttcgtgat cctgatggcg tcgctcgcgc acccgctgct ctttgtcgta
     1381 gccacagtcc tgctggggat gggatccgtg cgtgagcgcc tgactcagcg cgggctgcgc
     1441 gatcttccgg ctaattcgca taaagcgatt gcctgccaca caggcatgtc ttggcgcgcc
     1501 gtggtttttt cggcgagtcg caatcaattt tcatatcgtt ttaatatgga cacgcgcaac
     1561 ctgaagtact tcctcgccgt cgccgatgcc ggcagtatta cgcacgccgc tgactgcctg
     1621 aactgatcgg cggcgtgacg ctcgtcgccg gtgcgttggg cggactgctc gcgggcatgt
     1681 tgtcagacag gtacggccgc gtgcgcgcac tacagatcac ggtggtctgg ttctcactct
     1741 tcaccttcct ctgcgccttc gcgcagaact tcgaacagtt gctcgcgttc aaggctttac
     1801 agggcgtggg ttttgggggc gaatggaccg cgggcgccat gctgttgagt tagaccatgc
     1861 gcgcggaaca tcgcggcaag gcgatgggca ttgtgcagag cgcgtggggt ttcggctggg
     1921 cgggcgcggt gctgctgtac acgctggtgt tttcgctcgt gtcgcccgat tgggcctggc
     1981 ggttgctgtt cgccatcggc gtgattccag ccggactcgt gctttatctg cgccgtaacg
     2041 tagctgaacc cccgcgagcc gtcacaacca tcgcgtcgtc caagcaggcg ctgcctgctg
     2101 caagaagcat cttcgaccga tcgatgatct tcttcgaggc agttgaaacg atcgagaaga
     2161 ttcaacggtt gagcgccgga gaaagcgggc gaactcg
//
LOCUS       DATGBK010001524         1900 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_87142, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001524 DATGBK010000000
VERSION     DATGBK010001524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1900
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87142"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..918
                     /gene="panB"
                     /locus_tag="VKJ77_21220"
     CDS             103..918
                     /gene="panB"
                     /locus_tag="VKJ77_21220"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HMC47851.1"
                     /translation="MAYLQETSRTAITVPKLRTMREAGEKITMLTCYDASFSALLDRA
                     GVDVLLIGDSLGNVLQGHGTTLPVTLADIAYHTAAVARGNKNALVVADMPFGTVGSRE
                     ETYANAVQLMRAGAQMVKIEGGEWVADTVKFLVDRSIPVCGHVGLTPQSVHAFGGFKV
                     QGKTDAGAEQMRRDALAFQNAGAQLLVIEAVPTLLASEVTQQLVIPTIGIGAGIECSG
                     QVLVLHDMLGIFPGKRPRFVKDFMQGQPSILAAVEAYVRAVRERTFPGPEHTF"
     gene            complement(976..>1900)
                     /locus_tag="VKJ77_21225"
     CDS             complement(976..>1900)
                     /locus_tag="VKJ77_21225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013696726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HMC47852.1"
                     /translation="ALLPCGSITGAPKHKTMQLIDALESTPRGIYTGAIGWMDKSHNF
                     CLSVPIRTLELQHGRGRMGVGAGIVLDSVAADEFEECELKAQFLTGSDPGFDLFETTF
                     ATKEEGIRHSDRHLSRLETSAQWCGFPFDRTQLQKRIEETCAGFEAKAGHRLRIALSK
                     SGEITVTSAPLVPLAASTVDVLLASEYGFAARFADDPLLRHKTTSREEYDRAWREAEA
                     QGAFDMLFFNERAELTEGGRSNVFVRLNGRWSTPPLDAGLLPGVMRGVLIEELDAEER
                     MLTREDLDRAESLMICNALRGAVPARLKRLS"
BASE COUNT          363 a          585 c          554 g          398 t
ORIGIN      
        1 tgcgtgggcg caaggaattc tttgtcaagg gcacgtcact ttaagtccgt ccggcttgcg
       61 cgcaggcgtg ccgtctctta tctagtcgat gtggaaattc tcatggcgta tttgcaggaa
      121 accagccgca ccgcgatcac cgtcccgaag ctcaggacca tgcgcgaagc cggcgaaaaa
      181 atcacgatgc tcacgtgcta cgacgcgagt ttttccgcgc tgctggatcg cgcgggcgtc
      241 gatgtattgc tgatcggtga ttcgcttgga aacgtgctgc aaggccatgg cacgacgctg
      301 cccgtgacgc tggccgatat tgcgtatcac actgcggccg tcgctcgcgg caacaagaac
      361 gcgctggtgg tcgccgatat gccgtttggt acggtgggct cgcgcgagga aacctatgcg
      421 aacgccgtgc agttgatgcg cgcgggtgcg cagatggtga agatcgaagg cggagaatgg
      481 gtcgccgata cggtcaagtt tctcgtcgat cggtcaattc cggtttgcgg gcatgtgggg
      541 ttaacgccgc aatcggtgca cgcgtttggc ggcttcaagg tgcaaggcaa aaccgacgcc
      601 ggtgccgagc aaatgcgtcg cgatgccctc gcgtttcaga atgccggcgc gcagttgctg
      661 gtgatcgaag cggtgcctac gctgttggct agtgaggtta cgcagcagtt ggtcatccct
      721 acgattggca ttggcgcagg catcgaatgt tcgggccaag tgctggtgct gcacgacatg
      781 ctcgggattt tccccggcaa acggccgcgc ttcgttaaag acttcatgca agggcagccg
      841 agtattcttg ccgccgtcga ggcgtatgtt cgcgccgtca gggagaggac atttcccggg
      901 ccggagcata cgttttaagg gggttttgtt gatctggcag aggcaacgtt cgtgttcgtc
      961 acgcttcacc tctgcttagc tcagccgctt caatcgcgca ggcaccgcgc cgcgcagcgc
     1021 gttgcaaatc atcaacgatt ccgcacggtc caggtcctcg cgcgtcagca tgcgttcctc
     1081 agcatccagt tcttcgatca acacgccacg catcacgccc ggcaacaacc ccgcgtcgag
     1141 cggcggcgtg ctccaacggc cattaagtct cacgaacacg ttcgaccgcc ccccctccgt
     1201 cagctctgcg cgctcgttga aaaacagcat gtcgaacgcg ccttgcgcct cggcctcgcg
     1261 ccacgcacgg tcgtattctt cacgcgacgt cgtcttgtgc ctgagcaacg gatcatccgc
     1321 gaatcgcgct gcgaagccat attccgatgc cagcaaaacg tcgaccgttg acgccgccaa
     1381 aggcacgagc ggcgcactcg tcacggtgat ctcgccactt ttgctcaacg caatccgcaa
     1441 ccgatgaccc gccttcgctt cgaagcccgc gcaggtctct tcaatacgct tctgtaactg
     1501 tgtccggtca aaaggaaatc cgcaccactg agcgctggtt tcaagccgcg aaagatggcg
     1561 atccgaatgg cgaatccctt cttctttagt cgcgaacgtg gtttcgaata ggtcgaaacc
     1621 cggatcggag ccggtcagga attgagcctt caattcgcac tcctcgaatt catcggcggc
     1681 aacgctgtcg agcacaatgc ccgcgcccac gcccatcctg cctctcccgt gctgtagctc
     1741 cagcgtccgg atcggcaccg acaaacagaa gttgtggctc ttatccatcc agccgatcgc
     1801 gcccgtataa atgccgcgcg gcgtgctttc caacgcgtcg atcagttgca tcgtcttgtg
     1861 cttcggcgcg cctgtgatcg agccacatgg caaaagcgcg
//
LOCUS       DATGBK010001525         5454 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_318689, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001525 DATGBK010000000
VERSION     DATGBK010001525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5454
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318689"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1017
                     /locus_tag="VKJ77_21230"
     CDS             <1..1017
                     /locus_tag="VKJ77_21230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative zinc-binding metallopeptidase"
                     /protein_id="HMC47853.1"
                     /translation="EISAFEDAGDGLWRSRHPEYRDTLFKRCHNYEVEKVCNWMVPAA
                     STDPLCHACRLTHTIPNLRVANRRYYWFRLEAAKRRLLYTLGALGLRVESRQVNPKTG
                     LQFKFLEDKRGKRVLTGHDRGLITMNIAEADDAQRERVRLSMGEPYRTLLGHFRHEIG
                     HYYFDRLVANTPWITGFRKLFGDERANYREALAKHYKDGAPPDWGKSFVSAYATTHPW
                     EDWAETWAHYLHIVDTVDTAMACGVALMPGNSLDPTLEAKPPPGEATFDHLMKQWFPL
                     TYALNSLNRSLGMPDAYPFALAPPVVEKLRFVDKVIAASGHAEPSPDEAIAAVIKSLA
                     PRSD"
     gene            complement(1014..2384)
                     /locus_tag="VKJ77_21235"
     CDS             complement(1014..2384)
                     /locus_tag="VKJ77_21235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008348555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47854.1"
                     /translation="MSRTLEASPPEVDLQTLRKVILAASIGNFVEWFDFAVYGFLATI
                     LTREFFPSGDPAVGLLKTFAVFAVAFAFRPLGGIVFGVIGDRIGRKRTLALTILMMAG
                     ATTLIGLLPTYAAVGALAPFLLTVIRCVQGFSAGGEYAGACAYVMEHAPQHKRASYGS
                     FVPVSTFSSFAVAAIVAYVLDASLSADAMSTWGWRVPFLAAAPIGLIGLYLRMNLSET
                     PAFRALEGEHNVAHAPLRDTLRTQAAGILKLGAFISVTALSFYMFTTYFATYLQVAGG
                     LNRATSLLITVIALFFAAALCPLAGLYSDWVGRRKTVLTACVILIAMVYPSFSLAGSG
                     HFLPSVIGVGMLAIGAVLANVVTAPLLSEVFPTRMRYTASAITYNLAYTVFGGTAPLV
                     ATWLITTTGNNMSPALYLIVIAVMGLIGGLMLPETSKVSLHGASAAHSDATAAAALKS
                     VPGSAA"
     gene            complement(2864..3268)
                     /locus_tag="VKJ77_21240"
     CDS             complement(2864..3268)
                     /locus_tag="VKJ77_21240"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HMC47855.1"
                     /translation="MSDFVLDNPFLEFLDARLVAWTRGYAEFRMPIQARNLNRQGVLQ
                     GGAVATLLDAACGYAGLYAEQGEPAIHGFTLSLTVNYLDTGLGESVTAKGFIERQGRS
                     IFFSRGEAWVDDKLLIASAQGTFKYAGTHGKK"
     gene            3470..4432
                     /locus_tag="VKJ77_21245"
     CDS             3470..4432
                     /locus_tag="VKJ77_21245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HMC47856.1"
                     /translation="MKRLYIQEVATRDGFQNEKQFVDTDAKIALVNDLSACGFAKIEV
                     TSFTSPKAIPALRDAEAVMHGIARREGVVYTVLVPNVRGAERALSCGVDEVNLVMSVS
                     ETHNRANLRMSREQSFAQLREVIGVVKATPVAINVSLSTSMGCPMEGDVAVAEVLRWT
                     EHFAELGVHGVTLCDTTGMAFPSQVKALCERVRETFPALELTLHFHNTRGMALANTLA
                     ALSAGIDRFDASLGGIGGCPYAPGASGNVCTEELVHMLELDGYDTGVDLTSVLNAAAL
                     LPGLIGHDVPSQILKAGRRLDLHDAPPVDAGGAPAQQAFANEGA"
     gene            4434..4817
                     /locus_tag="VKJ77_21250"
     CDS             4434..4817
                     /locus_tag="VKJ77_21250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017332064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC47857.1"
                     /translation="MAIIDHLDHLVLTCADEAATRHFYTEVLQMKLETFGAGRTAFKF
                     GNQKINLHVRGKEFEPKAHVPVPGALDLCFIAAVPLDDVIAHLKLCEWPIIEGPVERT
                     GATQKIRSVYVRDPDLNLIEISELI"
     gene            complement(4955..>5454)
                     /locus_tag="VKJ77_21255"
     CDS             complement(4955..>5454)
                     /locus_tag="VKJ77_21255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HMC47858.1"
                     /translation="ETVDGLPHVFAINTLAPYILTALIDKPQRLVYLSSGLHESGDTR
                     LDDLLWQQRSWQGTSADCDSKLHDVLLAFGVARRWPGVLSNAVHPGWVPTKMGGSGAP
                     DDLKAAPQTQAWLAVSDDPAARVTGEYFFHMKRREPSAAARDAGLQDRLIDACERLSG
                     IRLPE"
BASE COUNT         1205 a         1718 c         1588 g          943 t
ORIGIN      
        1 gaaatcagcg ctttcgaaga cgcgggcgac ggcctctggc gcagccggca ccctgaatac
       61 cgggacacac tgttcaaacg ctgtcataac tacgaagtcg aaaaagtctg caactggatg
      121 gttccggccg cctccaccga cccgctgtgt cacgcctgcc gcctgacgca caccattccc
      181 aatctgcgcg tggcgaaccg ccgctactac tggttcaggc tggaagcggc caaacgccgc
      241 ctgctctaca cgctcggtgc gctgggactg cgcgtggagt cacgtcaggt caacccgaaa
      301 accgggctgc agttcaagtt cctggaggac aaacgcggta aaagagtgct gaccggtcac
      361 gatcgcggcc tgatcaccat gaacatcgcg gaagccgatg acgcgcaacg cgaacgcgtc
      421 cggctgtcga tgggcgagcc gtaccggacc ttgctaggcc atttccggca cgagattggt
      481 cattactatt tcgatcgact ggtcgccaat acgccgtgga tcacgggctt tcgtaagcta
      541 ttcggcgacg aacgggcgaa ttatcgcgaa gcgctggcga agcattacaa ggatggagcg
      601 ccgccggact ggggcaaatc gtttgtcagc gcctacgcga ctacgcatcc gtgggaggat
      661 tgggcagaaa cctgggcgca ttacctgcac atcgtggaca ccgtcgatac cgccatggcc
      721 tgcggcgtcg cgctcatgcc gggaaactcg ctggacccta cgctggaggc taagccaccg
      781 ccaggtgaag ccaccttcga tcatctgatg aaacagtggt ttcccctcac ctacgcgtta
      841 aacagcctga atcgcagcct cggcatgccg gacgcctacc cgttcgcgct tgcgccgccc
      901 gtcgtcgaaa aactgcgatt cgtggataag gtgatcgcag catcaggtca cgccgagccg
      961 tcgccagacg aagccattgc agcggttatc aaatcattgg cgccccgcag cgactaagcc
     1021 gccgatcccg gtacgctttt cagcgcagcg gcggcggtcg catcggaatg agccgcactc
     1081 gcgccatgca gcgagacctt cgacgtttcc ggcaacatca atccaccgat caatcccatc
     1141 accgcgatca cgatcaagta caacgcaggc gacatgttgt tgcccgtcgt cgtgatcagc
     1201 cacgtggcga cgagcggcgc cgtgccgccg aacaccgtat aggccaggtt gtaggtgatg
     1261 gccgaagcgg tatagcgcat gcgcgtcgga aaaacctccg acaacaatgg cgccgtcacc
     1321 acgtttgcca acacagcgcc aatcgccagc atgcccacgc caatcaccga tggcaaaaag
     1381 tgccccgacc ctgccagcga gaacgatgga tagaccatgg caatcaggat gacgcacgcc
     1441 gtcaacacag tcttccggcg gcccacccag tccgaataca gaccggccag cggacacagc
     1501 gccgccgcaa aaaacagagc aatcaccgtg atcagcagcg acgtcgcgcg attcaacccg
     1561 cccgccactt gcagataagt cgcgaaataa gtggtgaaca tgtagaacga caacgccgtc
     1621 accgagataa acgctcccag tttcagaatg cccgcggcct gcgtgcgcag cgtgtcgcgc
     1681 aacggcgcat gcgccacatt gtgctcacct tcaagcgcgc gaaaagccgg ggtttcgctg
     1741 agattcatcc gcaggtaaag accgatcagg ccgataggcg cggcggccag gaacggtacg
     1801 cgccagcccc aggtgctcat ggcatcggcg gaaagcgacg cgtcgagcac atacgcaacg
     1861 atcgcggcca ctgcgaagga cgagaacgtc gataccggca caaagctgcc gtaactcgcc
     1921 cgcttgtgct gcggtgcatg ttccatcacg taagcgcacg cgcctgcata ttcgccgccc
     1981 gcggagaaac cctgcacgca gcggatgacc gtcagcaaga acggcgcgag cgcgccgacc
     2041 gcggcatacg tcggcaacaa accgatgagc gtggtcgccc cggccatcat caggatcgtc
     2101 aacgcgagcg tgcgcttgcg gccaatgcgg tcaccaatca cgccaaacac aatgcccccc
     2161 agcgggcgga atgcaaacgc cacggcgaaa acggcgaagg tcttgagcag cccgactgcc
     2221 gggtcgccgc tcgggaaaaa ctcccgcgtg aggatggtcg cgaggaaacc gtatacggca
     2281 aagtcgaacc attcgacgaa attgccgatc gatgccgcga ggatcacctt ccgcagcgtt
     2341 tgcagatcga cttcaggggg cgatgcttcc aacgttctcg acattcgatg actcccggga
     2401 aaaggaacgg tgatgcagga aggttttttt gcgagccggc acaccggaaa cgcgctggat
     2461 gggtcccttt gagtagatgc gaccataaac cccgttccta gaacgatcgc gtcatggtga
     2521 taggaccgaa gcgacatcgg tcccgccagc tacgcgtgcg gccgatccga gcacagcgct
     2581 cctaacgaat gcgagcacgg tctatcactt gcaaaatctg cgtgcaacag accttcgcaa
     2641 atcatcgtta ccggctcgtc gaacaggccg ccgggggaac gcgcactact gaatatgctg
     2701 gacgcgaaaa ttcaacgtcc gacggacgtg ctcgtcaaga tcacgaccac gaacatctgc
     2761 ggctccgagc acgcatgcat ggtggtcaag gccaaaggct gaggcaaagc gcccgggtca
     2821 gttcaaaacc gacgcttttc aactccgtgc agcgcaaaaa caatcacttc ttaccgtgcg
     2881 tgcccgcata tttgaatgtc ccttgcgcgc tcgcaatcag gagcttgtca tcgacccatg
     2941 cttcgccacg cgagaaaaag atactgcgcc cttgccgctc gataaaaccc ttcgccgtca
     3001 cgctttcacc caaccccgtg tcgagataat tcaccgtcag cgaaagcgtg aaaccgtgaa
     3061 tggccggttc accctgctcg gcatacagac ctgcataacc acatgcggca tcgagcaggg
     3121 ttgccaccgc gccgccttgc aacacgccct gccgattcag gttacgcgct tgaatcggca
     3181 tgcgaaactc ggcataaccg cgtgtccacg caaccaggcg tgcatcgagg aattcgagaa
     3241 acggattgtc gagaacgaaa tcagacatcg gaaagagctc cagccttgga agtggggttt
     3301 atgcaagact gtgccatgac gaagtgattt gcgtgcgaag gcacttgcat gagccttccg
     3361 cgagcctttc caatttggaa acggtcgtgg aaaatccacc gattttcaag gccccgacgc
     3421 gggtccatca tgtccctata acgcgccacc atccgacatg aggagtccca tgaaacgcct
     3481 gtatatccag gaagtcgcga cccgcgacgg ctttcagaac gaaaagcaat tcgtcgatac
     3541 cgacgcgaag atcgccttgg tcaacgacct gagcgcatgc ggattcgcga agatagaagt
     3601 gacatcgttt acatcgccga aagccattcc cgcgctgcgc gacgccgaag ccgtgatgca
     3661 tggcatcgcg cggcgcgaag gcgtggtcta caccgtgctc gtgccgaacg tgcgcggggc
     3721 ggaacgcgcg ttgtcgtgcg gtgtcgatga agtcaacctc gtgatgtcgg tgagcgagac
     3781 ccacaaccgc gcgaacctgc gcatgagccg cgaacagtcg ttcgcgcaat tgcgcgaagt
     3841 gattggcgtg gtgaaagcaa cgccggtagc catcaatgtg tcgttgtcca cgtcgatggg
     3901 ctgccccatg gagggtgacg tcgcagtggc ggaagtgctg cgctggaccg agcatttcgc
     3961 cgaacttggc gtgcacggcg tgacgctctg cgacaccacc ggcatggcgt ttccctcaca
     4021 ggtcaaggca ctctgcgaac gcgtacgcga gacattcccc gcactcgaac tcacgctgca
     4081 cttccacaat acgcgcggta tggcgctggc caatacgctg gcggcgctga gcgcgggcat
     4141 tgatcgtttc gatgcatcgc ttggcggcat tggaggttgt ccctatgcac ccggtgcatc
     4201 cggcaacgtg tgtacggagg aactggtaca tatgctggaa ctggacggct acgacaccgg
     4261 cgtcgatctc acctcggtgc tcaacgcagc ggcgttgctg ccgggcctga tcggccacga
     4321 cgtgccgagc cagatcctca aagcgggtcg acggctcgac ctgcacgacg cgccgcccgt
     4381 ggacgcaggc ggcgctcccg cgcaacaggc atttgccaac gaaggagcct gacatggcca
     4441 tcatcgatca cctggatcac ctcgttctga cttgcgccga tgaagcagcg actcgccatt
     4501 tctacaccga agtcctgcag atgaagctcg aaaccttcgg cgcgggaagg actgcgttca
     4561 agttcggcaa ccagaaaatc aacctacacg tgcgcggcaa ggagttcgag ccgaaggcgc
     4621 atgtgccggt gccgggcgca ctggacctgt gcttcatcgc ggccgtgccg ctggacgacg
     4681 tgatcgcgca cttgaagttg tgcgagtggc cgatcattga agggccggta gagcgtaccg
     4741 gcgccacgca gaaaattcgc tcggtctacg tccgcgatcc cgatctgaac ctgatcgaga
     4801 tttccgagtt gatttaaggg accccagggg ctcgtgatgc agacgcgttc ctcgcgtccg
     4861 aatacgcccc cataagcgtc aactcatagc gcccggcaca ttcacgcgtt tgtgccgggc
     4921 cgtacaactt ctcgttcccc acacaccggc tctctcactc cggcagccga atccccgaca
     4981 agcgctcaca cgcgtcgatc agccgatcct gcaaacccgc atcgcgggcg gccgcgctcg
     5041 gctcgcgccg tttcatatgg aagaaatatt ctccggtcac ccttgcggca ggatcgtcgc
     5101 tgacggcgag ccaggcctgt gtttgcggcg ctgctttcag gtcgtcgggc gcgcccgagc
     5161 cgcccatttt ggtcggtacc cagcccggat gcacggcatt ggacaacacg ccaggccagc
     5221 ggcgcgccac gccgaacgca agcaggacgt cgtgcaattt tgagtcgcaa tcggcgcttg
     5281 taccttgcca ggagcgctgt tgccaaagca gatcgtcgag acgggtgtcc ccgctttcat
     5341 gcagccccga gctgagataa accagacgtt ggggcttatc gatcaaggca gtcaggatgt
     5401 agggagcgag cgtgttgatc gcgaagacat gcggtaagcc atccacggtc tcga
//
LOCUS       DATGBK010001526         3139 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_87172, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001526 DATGBK010000000
VERSION     DATGBK010001526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3139
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87172"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..827)
                     /locus_tag="VKJ77_21260"
     CDS             complement(<1..827)
                     /locus_tag="VKJ77_21260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004192520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HMC47859.1"
                     /translation="MIKLTPGKLTLPQLRRIARERVQLTLDPASHAAIDACAKAVEDI
                     AAKGLPAYGINTGFGRLANTHIPADQLELLQRNLVLSHAVGVGEPMSPPVVRLLMALK
                     LSSLGRGHSGIRRVVMDAMITLFNADILPVIPVKGSVGASGDLAPLAHMSGVLLGIGE
                     VFIDGRQAPAVDGLKAAGLEPLTLQAKEGLALLNGTQASTALALYNMFAIEDLYRTGL
                     VSGALSVDAAEGSVKPFDARIHALRGHAGQIDAAAAYRTLLEGSGINISHAGCDKVQ"
     gene            complement(1111..2067)
                     /locus_tag="VKJ77_21265"
     CDS             complement(1111..2067)
                     /locus_tag="VKJ77_21265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC47860.1"
                     /translation="MQRHPMQPDIPLGRPVVLIVDDTPDNLAMLSSALVAAGYAVLVA
                     LDGASALERIARLTPDVILLDAIMPGMDGFETCEQIKSNDLYKHIPVIFMTALADTQH
                     VVQGFRVGGIDYVTKPIRPDEVVARIAAHVRRAASQRHADIVLELNSRAAVIATVQGE
                     VHWHSALAPQRLAHFYGGDSNVAIAAGPLTRLPGALTNWLLDYSAAPDEDRAQTVEIL
                     PGGERLVARIAGAANRGTWIVVFEEHADGRDTADLALRFGLTQREAEVLLWLSRGKTN
                     RDISEILGMKPRTVNKHLEHIFEKLGVETRTAAAATALSGGR"
     gene            complement(2042..>3139)
                     /locus_tag="VKJ77_21270"
     CDS             complement(2042..>3139)
                     /locus_tag="VKJ77_21270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC47861.1"
                     /translation="KGLAFHLETSGRIPDVVRADEKRVRQILINLLGNAVRFTSHGSV
                     RLRTSHAWGLATFEIEDTGSGIPDEQLEAIFLPFERGEAARHNDHGTGLGLTICRLLT
                     EMMGGRLDVQSRVGSGTRFVLQLFLPEVRDPRVLITRPRDVLGYPGPRRSILVADDLT
                     DQRRIVTSVLEPLGFTMIEANSGPQALQLLATHNVDLIVMDVAMPSMDGFEASKLIRE
                     HRLSEAPILILSANAFAGDLEKGAAAGCDDYLAKPLHLPLLLDKVAALLEIEWLTEAA
                     GPADDTAASSQAALPLPAALALELRRFLELGYMEGFVAQLDEAGQNHPELADTLAPLR
                     ESARRFMLDDLDRQLRAVDGALPDAATPDAA"
BASE COUNT          629 a          990 c          932 g          588 t
ORIGIN      
        1 tcctgaacct tgtcgcaacc tgcatgcgag atgttgatgc ctgagccttc cagcaaggtg
       61 cgatacgctg ctgcggcatc gatctgtccg gcgtgaccgc gcaaagcgtg gatgcgggca
      121 tcgaagggtt tcaccgaacc ttcggcggca tccaccgaca acgcacccga caccaatccc
      181 gtgcggtaca ggtcttcgat cgcgaacatg ttgtacaacg cgagcgcggt cgaagcctgc
      241 gtgccgttga gaagcgcgag accttcttta gcctgcaacg tgagcggttc gagaccggcg
      301 gctttcagtc catcgactgc aggagcctgc ctgccatcga taaacacctc gccaataccc
      361 agcaacacgc ccgacatatg cgcgagcggc gcgaggtcgc ccgatgcgcc gacagaccct
      421 ttcaccggga tgaccggcag gatatccgcg ttgaacaacg tgatcatggc gtccatcaca
      481 acacgtctga tccccgagtg gccacgccca aggctcgaca atttcaaggc cattagcaag
      541 cgaacgacgg gcggcgacat gggctcaccc acgcccactg catgcgacag cacgagattg
      601 cgttggagga gttcaagctg atccgcagga atgtgcgtat tcgccagccg cccgaaaccc
      661 gtattgatgc cgtatgccgg caggcccttc gcagcgatgt cctccaccgc tttcgcgcaa
      721 gcgtcgatgg cagcatggct tgccggatcc agtgtcagct ggacgcgttc ccgcgcgatg
      781 cggcgaagtt ggggcagtgt cagtttgccg ggggtgagct tgatcatcgg gtcgtccttt
      841 tggctttggc tgcctcttgt ctatacaaga gaatagcctc aagtctaggg caacaaaatc
      901 ggtatataca agaggttttt tagggtccgg atgaggaagg acgtttttag cagcgggtgg
      961 cagcgttgcc gcataacggc gaggaccgtt tggagaatct ggcttgtacc gaggcgtggt
     1021 ttgggttaac cccgaatttt taagacttca agcaggaata aaccggtaat aaatcacggc
     1081 ggtcgccgct gtctatacca caacaccaac ttaccgccct ccactcaacg ccgtagccgc
     1141 cgcggctgta cgagtttcaa cgcccagctt ctcgaagata tgctcgaggt gcttgttcac
     1201 agtccgcggt ttcatcccca gaatctcgct gatatcgcga ttcgtcttgc ctcgcgacaa
     1261 ccatagcaac acctctgcct cgcgctgcgt cagtccaaaa cgcagcgcca gatctgccgt
     1321 atcgcgcccg tcggcatgct cctcgaaaac cacgatccag gtgccgcgat tcgcggcacc
     1381 cgcgatgcgc gccaccagcc gctcgccgcc gggcaggatc tcgacggttt gtgcccggtc
     1441 ctcgtccgga gcagcggaat aatccagcag ccagttcgtc aacgctcccg gcagcctcgt
     1501 caacgggccg gccgcaatcg ccacgttgct gtcgccgccg taaaaatgcg cgagccgttg
     1561 tggcgcaagc gcgctatgcc agtggacttc gccctgaacc gtcgcaatta cagccgcccg
     1621 cgagttaagt tcaagcacga tatccgcgtg ccgctggctc gccgcccggc gcacatgcgc
     1681 ggcaatccgc gcgaccactt cgtcgggacg aatcggcttc gtcacatagt cgataccgcc
     1741 taccctgaag ccctgcacca catgctgggt gtcggccagc gcggtcatga agatcaccgg
     1801 aatgtgcttg tagagatcgt tgctcttgat ctgctcgcaa gtctcgaagc catccatgcc
     1861 gggcatgatg gcatcgagca ggatcacgtc aggtgtgaga cgcgcgatgc gttcaagcgc
     1921 cgaggcaccg tccagcgcca ccagcaccgc gtaaccggcc gccacgagcg cgctggacag
     1981 catggcgaga ttatccggcg tgtcatcgac aatcagcact actgggcgtc ctagcggaat
     2041 atcaggctgc atcgggtgtc gctgcatcgg gtagggctcc gtcgaccgcg cgcaattggc
     2101 ggtcaaggtc gtcaagcatg aaacggcgtg ccgattcgcg cagcggcgcg agggtatcgg
     2161 cgagttcagg atggttctgc cccgcttcat cgagctgcgc gacaaaaccc tccatgtatc
     2221 cgagttcgag gaagcggcga agctcgagcg ccagcgccgc aggcagcggc aatgcagctt
     2281 gcgaggacgc ggcggtatcg tcagccggtc cggccgcttc agtcaaccat tcaatctcga
     2341 gcaaggcggc gaccttgtcg agcagaagcg gtaagtgcag cggtttagca aggtaatcat
     2401 cacaaccggc cgccgcgccc ttctccagat cgccggcgaa tgcattcgcc gacaagatca
     2461 ggataggcgc ttcgctcagc cgatgctcgc gaatcagctt gctggcttcg aagccgtcca
     2521 tcgatggcat ggcgacatcc atcacgatca ggtcgacgtt gtgggttgcg agcagttgca
     2581 gcgcctgcgg gccgctgttc gcttcgatca tggtgaagcc gagcggttcg agcacgctgg
     2641 tgacaatacg gcgctggtct gtgaggtcgt cggctaccag aatggagcgg cgtggccccg
     2701 gatatcccag cacgtcgcga ggccgcgtaa taagcacgcg cgggtcgcgc acttcgggca
     2761 ggaacagttg caagacgaag cgcgtgccgg acccgacccg gctctgcacg tccagccgcc
     2821 cgcccatcat ttccgtcaac aagcggcaga tggtcaagcc caggccagtg ccatgatcgt
     2881 tgtgacgcgc cgcctcgccg cgctcgaagg gcaggaagat cgcctccagt tgctcgtcag
     2941 gaatacccga tccagtgtct tctatctcga aggtcgccag gccccacgca tgactggtac
     3001 gcaacctgac cgagccgtgc gacgtgaaac ggaccgcgtt gcccagcaaa ttgatcagaa
     3061 tctgacgcac gcgtttttcg tcggccctga ctacgtccgg tatgcggccg cttgtctcca
     3121 aatggaacgc aaggccctt
//
LOCUS       DATGBK010001527         3155 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_110660, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001527 DATGBK010000000
VERSION     DATGBK010001527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3155
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110660"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            221..763
                     /locus_tag="VKJ77_21275"
     CDS             221..763
                     /locus_tag="VKJ77_21275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017232314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HMC47862.1"
                     /translation="MYATPEQFTAANKASMDALFTVAQAQFAAFERLSALNFNTTKAA
                     FEDSVNQVKALLSVKDAQAFVNLSAASAQPALEKAIAYSRSVYEVATQTQAEVTKLAE
                     TQASEMNKVVVSLMDKLTKNAPAGSDVAVAAVKSAMAAANSAYDSFTKVVKQATDMAE
                     ANVTSATETVVKEAGKKKAA"
     gene            1099..1503
                     /locus_tag="VKJ77_21280"
     CDS             1099..1503
                     /locus_tag="VKJ77_21280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017525120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HMC47863.1"
                     /translation="MQSRDPRLWMWAEALELLQDAERLQRQFFQVGVLQGAPCWEPPV
                     DLYENGNELRLLVALPGVTPQQVEVVLAPTMIIVSGERSLPTNSRRAAIHRLEIPYGR
                     FERRVALPPGQFELFDRRLEHGCLMLELRRLT"
     gene            1515..>3155
                     /locus_tag="VKJ77_21285"
     CDS             1515..>3155
                     /locus_tag="VKJ77_21285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019140189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HMC47864.1"
                     /translation="MQLEQAHPQAQGEPAAVTAAIDGASGALAIPDDALIIVPVRNMV
                     LFPGMILPITIGRDSSIAGAQQAVKAERPIGIVLQRNPEIDRPGLEDLCPVGTLANVL
                     RYVTTPDGTHHVICQGQQRFRLVELLEGYPFLVARVDRIEEPDGSGKEIEARFMQLKE
                     RALEVLRLMPHAAQELVGAVQNIGSAAALADMIAGLMDIKAPEKQKLLEAVDLQRRLD
                     AVLELLAQRIEVLRLSREIDERTKASMDERQREYLLREQLKSIQKELGEGEEGNAAEI
                     AELRKAVADAQMPEEVEKQATKELKRLERMSDGSAEYSMVRTYLDWLIELPWKAPEAT
                     AIDIAAARRILGEDHFGLEMVKKRILEFLAVRKLNPDGHGPILCFVGPPGVGKTSLGQ
                     SIAKALGRKFVRVSLGGVHDEAEIRGHRRTYIGALPGNIVQALSKAGTRGCVMMLDEI
                     DKAGTGSHGDPSSALLEVLDPEQNATFRDNYLAVPFDLSRVLFITTANVLDTVPGPLR
                     DRMEIVHLPGYTQEEKLEIARRYLVSRQFADNGLAPGQL"
BASE COUNT          668 a          959 c          961 g          567 t
ORIGIN      
        1 cttgactgaa gtgcgttcta gccgtgagta atccaacacg ctgattttta tagaattggt
       61 gcaacacatc aaaccaatgg catgcgtcca agaaaaatac ttgacacgca gtcagttgag
      121 tgtagaattc aatttgttgc aatgcagcaa tttatcggtc ctagagtgat tgcacacaag
      181 attgcagttt ccgttcgata accttttttg gagattcaaa atgtacgcca cccctgaaca
      241 atttaccgcc gcgaacaaag ccagcatgga tgcgctgttt accgtcgccc aagcccagtt
      301 cgccgcgttc gagcgtctgt cggcactgaa cttcaacacc accaaagcgg catttgaaga
      361 cagcgtaaat caagtcaaag cgctgctgtc ggtcaaggat gcgcaagcgt tcgtcaacct
      421 gagcgccgca tcggctcagc cggccctgga aaaagcgatt gcctattcgc gcagtgtgta
      481 cgaagtggcg acccagaccc aggccgaagt caccaagctg gccgaaaccc aagcttccga
      541 aatgaacaag gtcgtcgtct cgctgatgga caagctgacg aagaacgcgc ccgccggttc
      601 ggacgtcgcc gtagccgcgg tcaagtccgc catggccgcc gccaactccg cctacgacag
      661 cttcaccaag gtggtgaagc aagcgaccga tatggccgaa gccaatgtta cttccgccac
      721 cgagaccgtg gtgaaagaag ccggcaaaaa gaaagctgcc taagctttct tcaaggaaac
      781 gctggcagct tctcctcctc ctttgctgtc agcggccccg agggcaacct cggggcaccc
      841 taaaccccgg gctcagaccc ggggtttttt tgcctggaac ccgacccgcg gtgcttccgg
      901 cgaaggtttc gccgcgaatt tcttcgccgc ctcggcgtgc gccatcatag aattccgaac
      961 aattcgcatc gacggttctt gctacggcgc ctcaaagctt gttttgagga caggccgccc
     1021 gcatataacc gtgatcggga tcagggggcg gcgacggcgc ggtccacact atccaaaata
     1081 gatctggaga tgtcgactat gcaatcgcgc gatccgagat tgtggatgtg ggcggaggca
     1141 ctggaactgt tgcaggacgc cgagcggctg cagcgccagt tcttccaggt cggcgtgctt
     1201 caaggcgcac cgtgctggga gccgcccgtc gatctgtacg agaacggcaa tgaactgagg
     1261 ctgctggtcg cattgcccgg cgtcaccccg cagcaagtcg aagttgtgct tgcgccgacc
     1321 atgatcatcg tcagtggcga gcggtctttg cccacgaatt cccggcgcgc cgccatccat
     1381 cgcctggaga tcccctacgg acgtttcgaa cgccgcgtgg ctctgccccc aggccagttc
     1441 gagctgttcg accggcggct ggagcatggc tgcctgatgc tggaattgcg ccgcctaacg
     1501 tgagcgagaa cactatgcaa cttgaacaag cacatccgca ggcccaaggc gaacccgctg
     1561 ccgtcaccgc agcaatcgat ggcgcgagcg gcgcgcttgc catacccgat gatgcgctta
     1621 tcatcgtgcc ggtgcgcaac atggtgctgt tcccgggcat gatcctgccg atcaccatcg
     1681 gccgcgacag ttcgatcgcc ggcgcgcagc aggcggtcaa ggccgagcgt ccgatcggca
     1741 tagtgctgca gcgcaatccg gagatcgacc gtcccgggct ggaggatctg tgcccggtag
     1801 ggacgctcgc caatgttttg cgctacgtca ctacgcccga cggcacacat cacgttatct
     1861 gccagggcca gcagcgattt cgcttggtcg agttgctgga gggctatcct ttcctcgtgg
     1921 cccgggtgga ccggatcgaa gaacccgacg ggagcggcaa ggaaatcgag gcgcgcttca
     1981 tgcagctgaa agaacgcgcg ctcgaagtgc tgcgactcat gccgcacgcg gcgcaggaac
     2041 tggtgggcgc ggtgcagaac ataggttccg ccgcggcgct cgccgacatg atcgccggcc
     2101 tcatggatat caaggcgccg gagaaacaga agctgctcga agccgtcgat ctgcagcggc
     2161 gtctggacgc cgtgttggaa ctgctcgcgc agcgcattga ggtgttgcgg ctttcgcgcg
     2221 agatcgacga gcgcaccaag gcgagcatgg acgagcgcca gcgcgagtat ctgctgcgag
     2281 agcaacttaa atcgatccag aaggaactgg gcgaaggcga agagggaaat gccgccgaaa
     2341 tcgcggagct aaggaaagcc gtcgcggatg cgcaaatgcc tgaagaagtg gaaaagcaag
     2401 cgaccaagga attgaaacgc ctggagcgga tgtcggacgg gtcggccgaa tactcgatgg
     2461 tgcgcaccta cctcgactgg ctgatcgagt tgccgtggaa agcgcccgag gcgaccgcca
     2521 tcgacatcgc cgcggcgaga cgcattctgg gcgaggacca ttttggcctg gagatggtaa
     2581 aaaagcgcat cctggaattc ctggcagtgc gcaagctcaa tccggacggt cacgggccga
     2641 tcctgtgctt tgtcggcccg ccgggcgtgg gcaagacttc gcttggccaa agtatagcca
     2701 aggcactcgg acgcaaattc gtacgcgtat cgctgggcgg agtgcacgac gaggccgaga
     2761 tccgcggcca ccgccgcacc tatatcggcg cgcttccggg caacatcgtc caggcgctca
     2821 gcaaggccgg tacgcgcggc tgcgtgatga tgctcgacga gatcgacaag gccggcaccg
     2881 gcagtcacgg cgacccctct tcggcgctgc tcgaagtgct cgaccccgag cagaacgcca
     2941 cgttccgcga caactacctc gcggtgccct tcgatctgtc gcgcgtgctg ttcatcacca
     3001 cggccaatgt gctcgacacg gttcccgggc cgctgcgcga ccggatggag atcgtgcacc
     3061 ttccgggcta cacgcaggag gagaaactcg agatcgcgcg ccgttacctg gtgagtcgcc
     3121 agttcgccga caatggcctc gcgcccgggc agctc
//
LOCUS       DATGBK010001528         1942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_318713, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001528 DATGBK010000000
VERSION     DATGBK010001528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318713"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..993)
                     /locus_tag="VKJ77_21290"
     CDS             complement(<1..993)
                     /locus_tag="VKJ77_21290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC47865.1"
                     /translation="MNDVPGLNFALGEDIDMLRDSLANFAAKEIAPRAAEIDKTDQFP
                     MDLWKKFGDLGVLGMTVSEEYGGANMGYTAHMVAMEEISRASASVGLSYGAHSNLCVN
                     QIHRNGTEAQKRKYLPGLVSGEHIGALAMSEPNAGSDVVSMKLRADEKGDHYVLNGTK
                     MWITNGPDCDTLVVYAKTDIEANAKGITAFIVEKGMKGFSVAQKLDKLGMRGSHTGEL
                     VFENVEVPKENILGALNGGVKVLMSGLDYERAVLAGGPTGIMVACMDAVVPYIHDRKQ
                     FGQAIGEFQLIQGKVADLYTTLQACRAYLYAVGRQLDTLGAGHGRRVRKDCAGVI"
     gene            1195..1920
                     /locus_tag="VKJ77_21295"
     CDS             1195..1920
                     /locus_tag="VKJ77_21295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC47866.1"
                     /translation="MSSTPVTGNRRTPAGVKSQQRVKDILQAGRDVFAEKGYDTATSA
                     EIAQRAGISEATVFSYFSGKRELCARVIADWYDEIIDAFESGLPRDSSVRQQFAFIVR
                     THLRLMLVNGTGLCALVLSEGRTKHHDLSDALTDLQRRYTAPLMNVLAYGQTVGQVRA
                     DLPLRLLRSLVFGPIEHVLWDATLAKRHLSQAQIDTTADELIEVLWTALQPPAASLTA
                     LAQFRQDVEEASRRFAETASREK"
BASE COUNT          388 a          610 c          545 g          399 t
ORIGIN      
        1 aatcacgccc gcgcaatcct tgcggacccg gcggccgtga cctgcgccga gcgtatcgag
       61 ttgacgaccc accgcgtaga gatacgcgcg gcacgcctgc aaggtcgtat aaagatcggc
      121 gaccttgcct tgaatcaact ggaattcgcc gatcgcctga ccgaactgct tgcggtcgtg
      181 gatgtacggc acgaccgcgt ccatgcacgc gaccatgatc cccgtcgggc cacctgccag
      241 gaccgcgcgt tcatagtcga ggccgctcat cagcaccttc acgccgccgt tcaatgcccc
      301 aaggatattt tccttgggca cttcaacgtt ctcgaacacg agttcgccgg tatgcgagcc
      361 gcgcatgccg agcttgtcga gtttctgcgc gacggaaaac cccttcatgc ccttctcgac
      421 gataaacgcc gtaataccct tcgcattggc ctcgatatcc gtcttcgcat agaccacgag
      481 cgtgtcgcaa tccggcccgt tggtgatcca catcttcgtg ccgttgagca cgtagtgatc
      541 gcctttttca tcggcgcgca gcttcatgct gaccacgtcc gatccggcat tcggctcgct
      601 cattgccagc gcaccaatgt gttcgcccga taccagcccc ggcagatatt tacgcttctg
      661 cgcttccgtg ccgttgcgat gaatctggtt cacgcacaag ttggaatgcg caccatacga
      721 caaccccacc gacgccgacg cccgcgaaat ctcctccatc gcgaccatgt gcgccgtata
      781 gcccatgttc gcgccgccgt actcttccga caccgtcatg ccgagcacgc ccaggtcgcc
      841 gaatttcttc cagagatcca tcgggaactg atcggtttta tcgatttcag ccgcgcgcgg
      901 cgcaatctcc ttcgcagcaa aattggcgag cgagtcgcgc aacatgtcga tgtcttcgcc
      961 cagggcgaaa ttcagaccag gtacgtcgtt catgcgggtc tccttgttcg gtgtatcggc
     1021 tcgaggtcag cagcgtggtg ttggtgacag gaccaaatga ttgatccaaa ttttgagtca
     1081 cactcacact cggtaatttc catgatggac ggcagtttca cgccaaatac cacttcccgt
     1141 caatagggat ttgagctacg ctcacatctg attccttttc gcgcacacct tcttatgtcc
     1201 tccaccccag tcaccggaaa tcgccgcacg cccgcgggcg tcaagtcgca gcagcgcgtg
     1261 aaggacattc ttcaggccgg ccgggacgtc ttcgccgaaa aaggctacga caccgcgacg
     1321 agcgccgaaa tcgctcagcg cgcgggaatt tcagaggcga ccgtattcag ctatttcagc
     1381 ggcaaaaggg agttgtgcgc gcgggtgatc gcggattggt atgacgagat catcgacgca
     1441 ttcgaatccg gactgccccg cgacagcagc gtgcgccagc agtttgcgtt catcgtcagg
     1501 acgcatttgc ggctgatgct ggtgaacgga acgggcttgt gcgcgctcgt gttatcggag
     1561 ggacggacga aacatcatga cctcagcgac gcgctcaccg acctgcaacg ccgctatacc
     1621 gcgccgctga tgaacgtgct cgcttatggc cagacagtag gtcaggtgcg ggcggacttg
     1681 ccgttgcggc tgctgcgctc gctggtcttc gggccaatag aacacgtgtt gtgggacgcg
     1741 acgctggcga aacggcatct gagtcaggct cagatcgata caaccgccga tgaactcatc
     1801 gaagtgctgt ggactgcgct gcagcccccc gctgccagcc tgactgcgct tgcgcagttc
     1861 agacaggacg tggaagaagc atcgcggcgg ttcgcagaaa cggcgagccg ggagaaatga
     1921 gattgcggaa attcgcggtc gc
//
LOCUS       DATGBK010001529         3649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_41643, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001529 DATGBK010000000
VERSION     DATGBK010001529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3649
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41643"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..941)
                     /locus_tag="VKJ77_21300"
     CDS             complement(<1..941)
                     /locus_tag="VKJ77_21300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HMC47867.1"
                     /translation="MEPQSKHQHEHADGHGHDHEHSHDHKHEPSHAHHHGAGGHHHHH
                     APQAGQGRTFAIAVGLNMLIVVVQAVYGFLAHSTALLADAGHNLSDVLGLLLAWGAVW
                     LGTRKPSERYTFGLGSSSILASLANAALLLFACGAIVLEAVQRLLNPAPVAGLDVFFV
                     ATLGMVVNGFSAWLFMRGSKEDLNVRGAFLHMAGDAGISAAVAISGLVILFTGASWLD
                     PVMSIIVVGVIVVGTWGLGRDAMCLAMGAVPPGVDKPGIERYLAGLPGVTDVHDLHVW
                     ALSTTENAMTAHLVMPEGHPGDVFVDGIVATLRRDHA"
     gene            complement(942..1271)
                     /locus_tag="VKJ77_21305"
     CDS             complement(942..1271)
                     /locus_tag="VKJ77_21305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007576505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HMC47868.1"
                     /translation="MSSPFVATDERVVPLADLFRLLGDPTRLRIVLTCVDRRCAVGAI
                     AESLGLSASLVSHHLRLLRAARIVRAEREGKQVFYLAADNHISAMLAELLEHVAEPQT
                     DFRPDNE"
     gene            1409..3289
                     /locus_tag="VKJ77_21310"
     CDS             1409..3289
                     /locus_tag="VKJ77_21310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC47869.1"
                     /translation="MDTVFARGFAAHRDGRLTEAERDYQAALAAEPSHVDALHLLGVL
                     RHQQGQHAEAAELVRRAVDLRPADAGLQLNLGNALKALGRIDDAIERFRNALHLEPGF
                     SLAQYNLGNAYAAAGRHEDAADAFEKALRLQPLDAATWNNFGNALLGMRRYEEGAKAF
                     RRALQIRPGHAGAHNNLGMALNSLGDTHGAIEQFRAAIAAEPNYVAAHFNLGNLLDAV
                     GRPHEAVPVLQKVLRMQAQFAPAHFGLGHALAAVGSHEAALPQFERAVGLDPKYGVAW
                     LGLGNAHLALGAHKPALRAFDQALRLDPGLVAANLNRALTLLALGDYTRGLPAYEWRL
                     RAPGSITLPSLPRWNGEPLPRRTLQIRAEQGFGDTLQFVRFVPFAAKLVGQIVLEVQP
                     ELVALLEPAAHAAGVLLKSTANGSSKSTANAAPLADADAFSPLLSLPLALGVSNADKV
                     PARTPYLVVPAAYRKKWRGSLGGQSKRKLGIAWSGRIQPGETRSAPLGMLEPLFRLEG
                     IDWIVLQPTLTDEERSLLDIHPRARFIQRLEGKLEDFADTAAIVDRLDGVVSVDTAVA
                     HLTGALGKPLWLMLPFAADWRWGIDTASTPWYPKARLFRQPKPGAWDDVVQRVAGEIS
                     AS"
     gene            complement(3378..>3649)
                     /locus_tag="VKJ77_21315"
     CDS             complement(3378..>3649)
                     /locus_tag="VKJ77_21315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47870.1"
                     /translation="FLYGSYNGAMVVALTEVKPVEVRTKGFSLAYSLATTIGGFTPAI
                     STYLIHSTGNKAAPGAWMAVAAVCGLIATLVLYRSTEARSQYKTA"
BASE COUNT          691 a         1160 c         1158 g          640 t
ORIGIN      
        1 atcgcgtgat cgcggcgcaa ggtcgccacg atgccgtcca cgaaaacatc gccgggatgg
       61 ccttccggca tcaccagatg cgcggtcatt gcgttctccg tagtggacag tgcccagacg
      121 tggagatcgt ggacgtcggt cacgcccggc agacccgcca gatatcgttc gatacccggc
      181 ttgtccacgc ccggcgggac cgcgcccatt gccaggcaca tcgcgtcgcg gccaaggccc
      241 cacgtgccca ccacgatcac gccgaccaca ataatgctca tcaccggatc aagccagcta
      301 gcgccggtga acaggatcac gagaccgctg atggcaaccg cggcggagat gccggcgtcg
      361 ccagccatgt gcaggaaggc gccgcgcacg ttcaggtcct ccttgctgcc gcgcatgaag
      421 agccatgccg agaaaccgtt cacgaccatg ccgagcgttg caacgaaaaa cacgtcgagg
      481 cccgcgacgg gcgccggatt gagcaggcgc tgcacagctt cgagcacgat cgcgccgcag
      541 gcaaagagca gcagcgcggc gttggcgagc gaagcgagta ttgaggaact gcctagtccg
      601 aacgtgtagc gctccgacgg tttgcgcgtg ccgagccaga cggcgcccca ggcgagtagc
      661 aggccgagga catcggagag attgtggccg gcgtcggcga gcagcgcggt ggaatgggcg
      721 agaaaaccgt aaacagcctg caccaccacg ataagcatgt tcagcccgac tgcgatcgca
      781 aatgtgcggc cctgccccgc ttgcggcgca tgatggtgat ggtgtccgcc cgcgccgtgg
      841 tgatgggcgt gactcggctc atgcttgtgg tcgtggctat gctcatggtc gtgcccatga
      901 ccgtccgcgt gctcgtgctg atgtttggat tgaggttcca tttattcgtt atccggtcgg
      961 aagtcggttt gcggctcggc aacgtgttcg agcaattcgg ccaacatggc gctgatgtgg
     1021 ttatcggcgg cgagatagaa aacctgcttg ccttcacgct cggcacggac aatccgcgcc
     1081 gcccgcagca accgcaggtg atgactgacg agcgaagccg acaatcccag cgattccgcg
     1141 attgccccca ctgcgcagcg ccggtcgacg cacgtcagca caatccgcag gcgcgtggga
     1201 tcgcccaaga ggcgaaacag gtcggcaagc ggaacaacgc gctcatcggt cgctacaaag
     1261 ggggaagaca aaatagatca gctaacaatt gaacaggtgt tcatatgtta cagatatgaa
     1321 tcccggtgcg tcaatgccaa attccgcaaa attcgggatc ggcggtgaac gtgtgtaaaa
     1381 atgaggcgtt tgcattcgat tttcctcaat ggatacagtt tttgcgcgtg gcttcgcggc
     1441 gcatcgcgat ggccgcctca ccgaagcgga acgcgactat caagccgcgc ttgccgcaga
     1501 gccctcccac gtcgacgcac ttcatctgct cggcgtgctg cgccatcaac aaggccagca
     1561 cgcggaagca gccgaactgg tgcgtcgcgc ggtggacctg cgccccgccg atgccggtct
     1621 gcagctcaat cttggcaacg cgctgaaagc gctgggccgg attgacgacg ccatcgagcg
     1681 attccgcaat gcgctgcatc tggaacccgg tttttcgctt gcgcagtaca acctcggcaa
     1741 tgcgtacgcg gcggcgggcc gtcacgaaga cgccgccgat gccttcgaaa aagcgctgcg
     1801 cctgcaaccg ctggacgccg cgacctggaa caacttcggc aacgcgctgc tcggcatgcg
     1861 tcgttacgaa gaaggcgcga aggcatttcg ccgcgcgctg cagattcgtc ccggccacgc
     1921 gggcgcgcac aacaatctcg gcatggcgct caattcgctt ggagacaccc acggcgcgat
     1981 cgagcaattc cgcgccgcca ttgccgccga gccgaactat gtcgcggcgc atttcaacct
     2041 gggcaatctc ctcgatgccg tcggccgtcc gcacgaagcc gtgccggtcc tccagaaggt
     2101 gctgcgtatg caggcgcaat tcgcaccggc gcacttcggc ctgggtcacg cgctcgcggc
     2161 tgtcggctcg cacgaggcgg cgttgccgca attcgagcgt gcggtcgggc tcgatccgaa
     2221 gtacggcgtt gcgtggcttg gcctcggcaa cgcccatttg gcgctcggtg cgcacaaacc
     2281 cgcgttgcgt gcgttcgatc aagccttgcg gctcgatccc ggcctcgtcg cggcaaatct
     2341 gaaccgggcg ctgacgctgc tggcactcgg cgactacacg cgcggcctgc ccgcctacga
     2401 atggcgcctg cgcgcgccgg gcagcattac gctgccgtcg ctgccgaggt ggaacggcga
     2461 gccgctgccg cgccgcacgc tgcagattcg cgcggaacaa ggtttcggcg ataccttgca
     2521 gttcgttcgt ttcgtcccct tcgcggcgaa gctcgtcgga cagatcgtgc tagaagtaca
     2581 gccggaactc gtcgcattgc tggagccggc ggcgcacgcg gccggcgtgt tgctgaagag
     2641 cacggccaat ggctcgtcca aaagcacggc caacgcagcc ccgctcgccg atgcagacgc
     2701 tttctcgccg ttgttgagct tgcccctggc gctgggtgta tcgaacgccg acaaggtgcc
     2761 cgcgcgcacg ccgtatctcg tggtgccggc ggcgtatagg aagaagtggc gcggctcgct
     2821 cggtggtcag tcgaaacgca agctgggcat tgcatggtcc gggcggattc agccgggcga
     2881 aacacgctcg gcgccgcttg gcatgctcga accgttgttc aggctggaag gcatcgactg
     2941 gatcgtcttg cagcccacct tgaccgacga agagcgctcg ctgctggata ttcatccgcg
     3001 cgcccgcttc atccagaggc tggaaggcaa gctcgaagat ttcgcggata cagccgcgat
     3061 cgtggatcgg ctggacggcg tggtatccgt cgataccgcc gtcgctcacc tgaccggcgc
     3121 gttaggcaag ccgttatggc tgatgctgcc gttcgctgcg gactggcgct ggggtatcga
     3181 taccgcgtcg actccgtggt accccaaagc acgcttgttc cggcagccga aacccggcgc
     3241 atgggacgat gtggtccaac gcgtggctgg agaaataagc gcgtcgtaaa acagcatggt
     3301 cgttgagcgc acaaacaaaa atcccctcgc caaagcaagg ggatttttag tttcagcgct
     3361 ggcgaatatc gcgccgatca cgccgtcttg tattgactcc gcgcttccgt ggatcgatac
     3421 aaaaccagcg tcgcgatcaa cccgcagacc gcggcaacag ccatccacgc gcccggcgcc
     3481 gccttgttgc cggtggagtg gatcaggtat gtagagatgg ccggcgtgaa cccgccgatg
     3541 gtcgtcgcca ggctatacgc cagcgagaag cctttcgtcc gtacttcgac cggcttgact
     3601 tcggtgagcg ctacgaccat cgcgccgttg tagctgccgt acaggaacg
//
LOCUS       DATGBK010001530         1690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_341871, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001530 DATGBK010000000
VERSION     DATGBK010001530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341871"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1690
                     /locus_tag="VKJ77_21320"
     CDS             <1..>1690
                     /locus_tag="VKJ77_21320"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HMC47871.1"
                     /translation="GLTPRHEYHLDDLLELVHPDDRDRVRAGHLDMPAGALDYLEYRI
                     RRPDNGEERWMARRGEAIEGSGGGLRYLGVTYDITGHKRFEERLRVSESQLRRLNNSL
                     AADVDARTRERNSIWRNSRDLFIVASSAGVLRAVNPAWTDVLGFREDELIGKSFAEIV
                     HPDDVEATEAALLSAARSGLVRFENRNRHKDGSYRWVSWVAAPEGDALYGNGRDVTSE
                     KETQRALQQTEEALRQAQKMEALGQLTGGIAHDFNNLLQGITGPLELIRRYTQLGRTN
                     DIDRFISMATGAANRAASLTHRLLAFSRRQPLDPKPVNADELLHSIDDLLKRTMGEAI
                     ETRVVRNPHLWLTRCDANQLENALLNFAINARDAMPEGGRLTLETGNVELGHDFAARH
                     PDVAPGSYVVVSVSDTGAGMPADVKARAFDPFYTTKPLGQGTGLGLSMAYGFAKQSGG
                     IATIDSAPDAGTTIRLYLPRFSGDPGTQEIATELNDAHRAAGRHAILVVEDDASVREL
                     VCEILRDLDYQVLEAFDGPSGLTILNSQARIDLLVTDVGLPGLNGRQLADAARAT"
BASE COUNT          311 a          534 c          563 g          282 t
ORIGIN      
        1 ggggtttgac gccccgtcat gaataccatc tcgacgacct gctggaactc gtgcatcccg
       61 acgaccgcga ccgcgtgcgc gccggccatc tcgacatgcc ggccggtgcg ctcgattacc
      121 tggagtaccg cattcgccgc ccggacaacg gcgaggagcg ctggatggcg cgccgtggcg
      181 aagcgatcga aggcagtggg ggcggcttgc gttatctcgg cgtgacgtac gacatcaccg
      241 ggcataagcg ctttgaagag cgcctgcgtg tcagcgaatc gcaattgcgg cgcctgaaca
      301 attcgctggc ggctgatgtc gatgcccgca ctcgcgagcg caacagcatc tggcgcaatt
      361 cgcgcgacct gttcatcgtc gcgagcagcg cgggcgtgtt gcgcgccgtc aatccggcct
      421 ggaccgacgt tctcggcttt cgcgaggacg agctgatcgg caagtcgttc gcggagatcg
      481 ttcatcccga cgacgtggaa gccaccgaag cggcgctgct gtcggcggcc cggtcggggc
      541 tggtgcgctt cgagaatcgc aaccgtcaca aggacggctc gtatcgatgg gtgtcgtggg
      601 tcgcagctcc agaaggcgac gcgctttacg gcaacggccg cgacgtcacc agcgaaaagg
      661 aaactcagcg agcgcttcaa caaaccgagg aagcgctgcg ccaggcgcag aaaatggagg
      721 cgctcggaca actgacgggc ggaattgcgc acgatttcaa caatctcctg caaggcatca
      781 cggggccgct cgaactgatc cgccgataca cccagctcgg ccggacaaac gacatcgacc
      841 ggttcatttc gatggcgacc ggcgcggcca accgggcggc atcgctcacg caccggctgc
      901 tggcgttttc gcggcgtcag ccgctcgatc caaagccggt gaacgcggac gagctgctgc
      961 attccatcga tgatctgctc aagcgcacga tgggcgaagc gatcgagacg cgcgtggtgc
     1021 gcaacccgca cctttggctc acgcgctgcg acgcgaacca gcttgaaaac gcgctgctga
     1081 atttcgcgat caacgcgcgc gacgccatgc cggaaggcgg ccgcctgacg cttgaaaccg
     1141 gcaacgtgga actcggccac gactttgccg cgcgccatcc cgatgtggcc ccggggtctt
     1201 acgtggtggt gtcggtgtcg gatacgggcg cgggcatgcc cgccgacgtc aaggcgcgcg
     1261 ccttcgaccc gttctatacg accaaaccgc tgggtcaggg cacggggctg ggtttatcga
     1321 tggcttacgg gtttgcgaag cagtcgggcg ggattgcgac aatcgacagc gcgcccgacg
     1381 ccggcaccac gatccggctg tatctgccgc gtttttcggg cgatccgggc acacaggaaa
     1441 tcgcgaccga acttaacgac gcgcatcgtg cggccggacg gcacgcgatc ctggtggtgg
     1501 aagacgacgc gtccgtgcgt gaactcgtgt gcgagatcct gcgcgacctg gattatcagg
     1561 tgctcgaagc gtttgacggc ccgtccggat tgaccattct caattcgcaa gcgcgtatcg
     1621 acttgctggt gactgacgtc gggcttcccg ggctgaacgg ccggcaactg gcggacgccg
     1681 cgcgagcgac
//
LOCUS       DATGBK010001531         1751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_179595, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001531 DATGBK010000000
VERSION     DATGBK010001531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179595"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1193
                     /locus_tag="VKJ77_21325"
     CDS             <1..1193
                     /locus_tag="VKJ77_21325"
                     /EC_number="2.7.7.65"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional diguanylate
                     cyclase/phosphodiesterase"
                     /protein_id="HMC47872.1"
                     /translation="DLDRFKVVNDSLGHHFGDMLLVQAAARLRSCLRENDLLARLGGD
                     EFAVLSPGAPLDTAVAIAERILAAFDLPFHIDDHVVFSSCSIGIVSPDSQFHNEPADL
                     LRDADTAMYRVKNGGRDSFVVFNHELRREVSDQVEREGALRNALKRDDELVPYFQPIV
                     CVNSGQLVALEALIRWRQPDGRIITPGDFLPAVEGLRLIGRLDLYMLTRVAVILAQPQ
                     HADWPPVHVNCSSYGMTRPEFADDVLALLARHGVAPSRICLELTEGALVAEPDLARRS
                     MQRLADHGMSVVLDDFGAGFSSLSYVHQYRFSGLKIDQSFIFELTTSPRSRAIVRAIV
                     RMAESLDLTLVAEGVEDAATLAVLREMGAAQAQGYYFAQPMPLEELLLTTLAPRLQAL
                     THEP"
     gene            complement(1321..>1751)
                     /locus_tag="VKJ77_21330"
     CDS             complement(1321..>1751)
                     /locus_tag="VKJ77_21330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47873.1"
                     /translation="HSAQPTFQELREWASFHEDSSADKTTNQQKMEPQKARGAVQIPW
                     KACLPESVRGEACACKNSREGGFHKSVVLASTVLLGCQKRGNCTLGQLMSPRFESAFF
                     ASFLCRFGQRNDVPPRAVANSDKENIRLMQTTKAESSNPA"
BASE COUNT          300 a          532 c          531 g          388 t
ORIGIN      
        1 tcgatctcga ccgcttcaag gtggtgaacg acagtctcgg ccatcatttt ggcgacatgc
       61 ttttggtgca agcagcggcg cgcctgcgta gctgcctgcg cgagaatgac ctgctcgcgc
      121 gcctcggtgg cgacgagttc gcagtgctgt cgccgggtgc accgctggac acggcagtgg
      181 cgatcgcgga acggatcctg gcggcgttcg acctgccgtt tcacatagac gaccacgtgg
      241 tgttctcgtc gtgcagcatt ggtattgtca gtcccgacag ccagtttcac aacgaaccgg
      301 ccgatctcct gcgcgatgcc gataccgcca tgtatcgcgt gaagaacggc ggccgcgaca
      361 gtttcgtcgt gttcaaccat gagctgcgcc gcgaggtatc cgatcaggtc gagcgcgaag
      421 gggcgttgcg caacgcgctc aagcgcgacg acgaactggt accgtatttt cagcctattg
      481 tttgcgtgaa cagcggccag ctcgtggcgc tggaagcatt gatccgatgg cgccaacccg
      541 atggccgcat catcacgccg ggcgatttcc tgccggcagt ggaaggcttg cgcctgatcg
      601 gacggctcga tctctacatg cttacgcgcg tcgcggtgat cctcgcgcag ccgcaacacg
      661 ctgactggcc gccagtgcat gtgaactgtt cgagctacgg catgacgcgc ccggagttcg
      721 ccgacgacgt cctcgccctg ctcgcgcgtc acggtgtcgc gccgtcgcgg atctgcctgg
      781 agctgacgga aggcgcgctg gttgccgagc ccgatctggc caggcgttca atgcaacgtc
      841 tcgccgatca cggcatgtcg gtggtgctcg atgacttcgg cgctggattt tcgtcgctga
      901 gttacgtgca tcagtaccgc ttcagcggcc tgaaaattga ccagtcgttt atcttcgagc
      961 tgactaccag tccgcgcagc cgcgcaatcg tacgggcaat cgtgcggatg gcggagtcgc
     1021 tggacctgac gctcgtggcg gaaggcgtgg aagatgcagc cacgctcgcc gtgctgcgcg
     1081 agatgggtgc tgcgcaggcg caggggtact actttgctca gcccatgccg ctggaagagc
     1141 tcttgctgac cacgctcgcg ccgcgcttgc aggcgctgac tcacgagcct tgagggtctg
     1201 atcgcggagt ggcgctcaac acgcgccttc gtgacttcgc ctatcctgtg aactgatctg
     1261 tcacggcgag actgcccatg cgccccgctt ccgccagttt ccagggttag cggtcggggt
     1321 ctatgccggg ttgctgcttt cggccttagt ggtctgcatg agtcggatat tttctttatc
     1381 actattagcc actgcgcgtg gcggcacgtc atttctttgt ccaaagcgac aaagaaacga
     1441 agcaaagaaa gcgctttcaa aacgcgggct cataagttga cccagcgtgc agtttccacg
     1501 tttttggcac cccaaaagca cggtgctcgc cagaaccacc gatttgtgaa accctccttc
     1561 tcgcgaattc ttacacgcac acgcttcgcc ccgtacgctc tcgggcaagc acgctttcca
     1621 aggaatttgc accgccccac gcgctttttg cggctccatt ttttgttggt tggttgtttt
     1681 gtcagcgctg ctatcttcgt ggaacgaagc ccactcccta agttcttgaa aggtgggttg
     1741 cgcgctgtgt g
//
LOCUS       DATGBK010001532         4693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_64533, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001532 DATGBK010000000
VERSION     DATGBK010001532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4693
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64533"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VKJ77_21335"
     CDS             complement(<1..276)
                     /locus_tag="VKJ77_21335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336745.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC47874.1"
                     /translation="MTLHFEPILQQWPYLLGGAWLSLQIAVLAFAFGMVIGLVCASVL
                     RYGPVFLRRAVTAYVIFATNTPQLVQIFFLFFALPEIGVTLSPFTAVL"
     gene            complement(372..1187)
                     /locus_tag="VKJ77_21340"
     CDS             complement(372..1187)
                     /locus_tag="VKJ77_21340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011549779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47875.1"
                     /translation="MKPLILMSRLLAVGLAACSLLGSFNASARTLDEIIASKKIVFGI
                     NPNLPPLGTYDAKNNIDGFDVSIAKKIADSLGVKLEIVPVGSNDRVPFLMTDKIDAVM
                     GGMTRNADRLKVIDFTDPVNTEVLGVLTTQATSYTDWTQLNDPAVRLVQVRGTTPIQL
                     IQEKLPKAQLLILDNYPDAVRAIAQGRADALIDVLDFMLSYTKNYPTKWRVVDAPIEV
                     DYDCIGVQKGNTALTQRLNKEVDALQKNGFVAASWKKWFGSAMLHDPTAAPAQ"
     gene            1346..1651
                     /locus_tag="VKJ77_21345"
     CDS             1346..1651
                     /locus_tag="VKJ77_21345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC47876.1"
                     /translation="MLNDETMRIDNSNRATTIRFFFDGQPASARVGESVAAALFASGT
                     KTLRASPRERSPRGMFCLMGSCQECLVMVDGCRVLACRTTVADGMRVEKTPEAGNDD"
     gene            1641..3095
                     /locus_tag="VKJ77_21350"
     CDS             1641..3095
                     /locus_tag="VKJ77_21350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HMC47877.1"
                     /translation="MTTDFDVIVLGGGPAGVNAALAAAAAGLKVALFDENTAAGGQVY
                     RAPVYATRSSAVDHQTEHQTDHPTEQPGDALRRELAQSAVITYFNHVVWAVTADYRVD
                     AAGPGGPMHCTGRALIVATGTTERVVPFDGWATPGVIGLAAATILLKSQGILPGRSTL
                     VAGCGPLLAAVAAKTIEGGGKVEAIADIAGLGDWGRTLPAMMSRPDLMREGFHWWREI
                     SRAGVPILSRHTIVKVEQVHDGLRATLAPCDTAGRPVSGKRRNVVADCIAVGHGLTPS
                     TEITRLLRAQHRYSRQAGGWIAVADQDGRTSRARLYVAGDGAGIAGAAAASLHGTLAG
                     LACAIDLGSSDTQRRSPVPAAREAHAKAARFGRSMAQLMALRPGHIDSIGPQTIVCRC
                     EDVTRGEIDAACDAGAHDVNQLKAWTRCGMGPCQGRTCGDIAAELLAARAHGGSRERA
                     GCFSARTPLRPMTVEALTGNFSYDDIPIPTAAPL"
     gene            3092..4237
                     /locus_tag="VKJ77_21355"
     CDS             3092..4237
                     /locus_tag="VKJ77_21355"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC47878.1"
                     /translation="MNQATPTAFDVAVVGGGVMGCTTALFLARAGMRVVVVERDALCR
                     GASGVNAGTLTLHMTRAALVPYAIRAWDMWMNTGTWLGQSVLATAAPGLSLAFTEHEK
                     TLLQQRAAARREYGAQIDLLDRHGALAVEPGLNPAVLQAAYCATDGFASAYLTGRAYH
                     AALREAGVQVFEQMPATRIDHIAGMYRVSGPDDAIRIDATRLVMAGGVWLEPLLAMLD
                     IDIPVKTLVNQLIVTERMPPIMQSVLSIANGLLSMKQFANGSVLIGGGWQGVGDRVRG
                     GVETLPDNLIGNLRLAQHVIPALAKARVARIWLGLESETADAMPMIGALPGLPDAWVI
                     GCVHSGYTSGPYMGKLLAQAMLGEEPELPLFDPARLMVPVEALAQPH"
     gene            4249..>4693
                     /locus_tag="VKJ77_21360"
     CDS             4249..>4693
                     /locus_tag="VKJ77_21360"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HMC47879.1"
                     /translation="MIPTHADPFNGVYAATLCPLDADGRHLDEAALARHIETVANVDG
                     IAGLLVNGHAGENFALSAADKRRVVDIAHAVCGDRLIIVAGVNSEDSYEAQADTNDAQ
                     QAGADAMLLFPPYSWALSTDIGTVLLHHRIANAEARLPMMLYQAGV"
BASE COUNT          853 a         1510 c         1497 g          833 t
ORIGIN      
        1 cagcaccgcc gtgaacggcg acagggtcac gccaatctcg ggcagcgcga agaacaggaa
       61 gaaaatctgc acgagttgcg gcgtgttggt cgcgaagatc acatacgccg tgacagccct
      121 gcgcagaaat accggcccgt agcgcaacac cgaagcgcat acgagtccga tgaccatgcc
      181 gaacgcaaac gcgagcacgg caatttgcag gctgagccat gcaccgccaa gcagataagg
      241 ccactgctgg agaatgggct cgaaatgtag agtcatcgaa tagtggctcc cgccggatgc
      301 gcagcgctcg ttcgtgcgtt tgcttgtgcc tttatttgtt catcacagcc gcagcgctgc
      361 tgcagtttca cttactgcgc gggtgcggcg gtcgggtcat gcagcatcgc actgccgaac
      421 catttcttcc agctcgcggc gacaaagccg tttttctgca gcgcatcaac ttccttgttc
      481 agccgctgcg tcagcgccgt attgcccttc tgcacgccga tacagtcata gtccacttcg
      541 atcggtgcgt ccaccacacg ccatttcgtc ggatagttct tcgtatagct cagcatgaag
      601 tcgagcacgt cgatcaatgc atcggcgcgg ccctgggcaa tcgcgcgcac cgcgtccggg
      661 taattatcga ggatcaggag ctgcgccttg ggcagcttct cctggatcaa ctgaataggc
      721 gtcgtgccgc gtacctgcac gagacgcacc gccggatcgt ttaactgcgt ccagtccgta
      781 taggacgtcg cctgtgtcgt caggacacca agcacttccg tgttcaccgg atcagtgaaa
      841 tcgatcacct tcagccggtc cgcgttacgc gtcatgccgc ccatcaccgc gtcgatcttg
      901 tcggtcatca ggaacggcac gcgatcgttg gacccgaccg gaacgatttc aagcttgacg
      961 ccaagcgagt ccgcgatctt cttcgcgatg ctgacatcga aaccgtcgat gttgttcttc
     1021 gcgtcgtagg tgccgagcgg cggcaggttc gggttgatgc cgaacacgat cttcttcgac
     1081 gcaatgattt cgtcgagtgt gcgggcgctg gcgttaaacg agccaagcaa cgagcaagcg
     1141 gcaaggccca cggcgagcag gcggctcatg aggatcaggg gtttcatgcg gtaactccgt
     1201 aaaaggttcg gggatgatga ctcacagttc tggcgcgcgg ttcgggtact cccggatcct
     1261 ctttattttg atcaatttac gtatacgaac cgtatacgat agtatggaaa catcgacgaa
     1321 attagttgtc aagggaggcc gtctcatgct gaatgacgag accatgcgca tcgacaattc
     1381 aaaccgcgcc accacgatcc ggtttttctt cgacggccag ccggcgtcgg cgcgcgtcgg
     1441 cgaaagcgtg gcggccgccc tgttcgcgtc gggtacgaag accttgcgtg cgagtccgcg
     1501 tgagcgctcg ccgcgcggca tgttctgcct gatggggtct tgccaggagt gcctggtcat
     1561 ggtcgacggc tgccgcgtac tcgcgtgccg gaccaccgtc gcggatggaa tgcgcgttga
     1621 gaaaacaccg gaggccggca atgacgactg acttcgacgt catcgtgctc ggcggcggac
     1681 cggctggcgt gaacgcagcg ctggcggcag cagcagcggg tctcaaggtc gctctgttcg
     1741 acgagaacac ggcggccggc ggccaggtct atcgcgcgcc ggtctacgcc acgcggtcct
     1801 cggccgtgga ccaccaaacg gagcaccaaa ccgaccaccc aacggagcaa cccggcgacg
     1861 ccctgcggcg tgaactcgcg caaagtgcgg tcattaccta cttcaatcac gtggtgtggg
     1921 ccgtcaccgc cgactatcgc gtcgatgccg ccggtccggg cggccctatg cattgcaccg
     1981 ggcgcgcgct gattgtcgcc acgggaacca cggaacgtgt cgtgcccttc gacgggtggg
     2041 ccacaccggg tgttatcgga ctcgccgccg cgaccattct gcttaaatcg cagggcatcc
     2101 tgccgggccg ctcgacgctc gtggccggct gtggaccgtt gctcgcggcc gtcgcggcga
     2161 agacgataga aggcggcggc aaggtcgagg cgattgcgga tatagcaggc cttggcgact
     2221 ggggacgcac gctgcccgcc atgatgtcgc gtcctgacct gatgcgcgaa gggttccact
     2281 ggtggcgcga aatcagccgc gcgggcgtgc ccattctttc gcgccacaca attgtcaaag
     2341 tcgagcaagt ccacgacggg ctgcgcgcaa cccttgcgcc ctgcgacacg gcgggtcgcc
     2401 ccgtctcagg aaaacgccgc aacgtggtcg ccgactgcat cgcggtcggt cacggcctta
     2461 cgccgtcaac agagatcacg cgcctcttac gggcgcaaca ccggtactcg cggcaagcgg
     2521 gcggctggat cgccgtcgcc gaccaggacg gccgtacgtc gcgcgcgaga ctctatgtgg
     2581 cgggcgatgg tgcaggcatc gccggcgcgg ctgcagcgag ccttcacggc acgctcgcgg
     2641 ggctcgcctg cgccatcgac ctcggcagct ctgacaccca gcgccggtcg cctgtgccgg
     2701 cggcacgcga ggcacacgca aaggctgcgc gtttcggccg ttcgatggcg cagttgatgg
     2761 cgctgcggcc tgggcacatc gacagcatcg ggccgcaaac catcgtctgc cgatgcgagg
     2821 acgtgacccg cggcgaaata gacgctgcct gcgacgccgg cgcacacgac gtgaatcagc
     2881 tcaaggcgtg gacccggtgc ggcatgggac cgtgccaggg ccgcacgtgt ggagacattg
     2941 cggcggaatt gctggccgcc cgcgcgcacg gcggctcgcg cgaacgcgct ggctgctttt
     3001 cggcccgcac gccgttgcgg ccaatgacgg tggaagcgct cacaggcaac ttcagctacg
     3061 acgacattcc gatcccgacg gcggcgcccc tatgaaccag gcgacaccaa ccgcattcga
     3121 tgtcgccgtg gtcggcggcg gcgtgatggg atgcaccacc gccctatttc tcgcgcgtgc
     3181 cggcatgcgg gtggtggtgg tcgaacgcga tgcgctgtgc cgtggcgcat cgggcgtgaa
     3241 cgccggcacg ttgacgctgc acatgacgcg cgccgcgctc gttccttacg cgatccgggc
     3301 gtgggacatg tggatgaata ccggtacgtg gctaggccag agcgtgcttg ccaccgccgc
     3361 gcccggcctc tcgctcgcct tcacagagca cgagaagacg ctgctgcagc aacgcgcggc
     3421 ggcaagacgc gagtacggcg cgcaaatcga tctgctcgac cgtcatggcg cgctcgccgt
     3481 cgagcccggt ctgaatccag cggtactgca agctgcgtac tgtgcgacgg acggcttcgc
     3541 cagcgcatac ctcacgggcc gcgcctacca tgcagcattg cgcgaagcgg gcgtgcaggt
     3601 gttcgagcag atgccggcaa cgcgcatcga tcacatcgcc gggatgtatc gcgtgagcgg
     3661 cccggatgac gcaatccgta ttgacgcaac gcggctcgtg atggcgggcg gcgtgtggct
     3721 ggaacccctg ctcgccatgc tcgatatcga catccccgtc aagacgctcg tcaatcagtt
     3781 gatcgtcacc gaacgcatgc cacccatcat gcagtcagta ctaagcattg cgaatggact
     3841 gctgtcgatg aagcagttcg ccaacggcag cgtgctgata ggcggcggct ggcaaggcgt
     3901 cggcgatcgc gtgcgtggcg gcgtggagac cttgccggac aacctgatcg gcaatctccg
     3961 gctcgcgcag catgtgatcc ccgcgctcgc caaggcgcgc gtggcccgca tctggctcgg
     4021 ccttgaatcc gaaaccgccg acgccatgcc gatgatcggc gcgcttcccg gacttccgga
     4081 tgcctgggtg atcggttgcg tgcactccgg ttacaccagt ggtccctaca tgggcaagct
     4141 gcttgcccaa gccatgctcg gcgaggaacc cgagttgccc ctgttcgatc cggcgcgcct
     4201 catggttcct gtcgaggcgc ttgcccaacc tcattgagaa aagacagaat gattccgacg
     4261 catgccgacc catttaacgg cgtttatgcc gccacgctgt gccctctcga cgcggacggc
     4321 cgacacctgg acgaagccgc gctcgcgcgg catatcgaaa cggtggcgaa cgtggacggc
     4381 attgcgggcc tgctcgtgaa cggccacgcc ggcgagaact tcgcgctctc ggcagcggac
     4441 aaacgacgcg tagtggacat tgcgcatgcc gtctgcggtg atcgtttgat catcgtagcg
     4501 ggcgtgaact ccgaggacag ctatgaagcg caggccgaca ccaacgacgc acagcaggcc
     4561 ggcgccgacg ccatgctgct gtttccaccg tactcgtggg cgctgtcgac cgatatcggc
     4621 accgttctcc tgcatcaccg gatcgccaac gccgaagcac gcctgcccat gatgctttac
     4681 caggccggcg tcg
//
LOCUS       DATGBK010001533         1657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_249287, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001533 DATGBK010000000
VERSION     DATGBK010001533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249287"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(18..893)
                     /locus_tag="VKJ77_21365"
     CDS             complement(18..893)
                     /locus_tag="VKJ77_21365"
                     /EC_number="4.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013343092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-independent malonate decarboxylase
                     subunit beta"
                     /protein_id="HMC47880.1"
                     /translation="MSSADTISAFVNRQSFIELDARERAQSLMDSGSWRELVGPFDRI
                     ESPWLPAQGIAPQSDDGCVVLKGTVAGEAVVVIALEGGFQAGSMGEVSGAKMSTALDL
                     AAQDSQNGTKTAAILLLETGGVRLQEANLGLAAVAEVMASMLALRRHAPIITVIAGTV
                     GCFGGMSLAAGLSSYLVMTREARLGLNGPEVIEQESGLEEFDSTDHALVWAIDGGEQR
                     VAMGVADELVLDDVQSIAAAVRRCVAAGLPPVHRSEQFEIYRKRTAALDTSSQIDPLT
                     LRDSWNGKTALGGAQ"
     gene            complement(890..1186)
                     /locus_tag="VKJ77_21370"
     CDS             complement(890..1186)
                     /locus_tag="VKJ77_21370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonate decarboxylase subunit delta"
                     /protein_id="HMC47881.1"
                     /translation="MEHLKFDYPSATRRVTNKAHVGVVGSGELEVLMQPDVTGTAHVS
                     ILTSVTGFSSSWKAVLDRFFSKFDGAVRIDINDAGATPGAVMLRLEQAVEVIEQ"
     gene            complement(1173..>1657)
                     /locus_tag="VKJ77_21375"
     CDS             complement(1173..>1657)
                     /locus_tag="VKJ77_21375"
                     /EC_number="2.4.2.52"
                     /inference="COORDINATES: protein motif:HMM:NF013991.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046917 - triphosphoribosyl-dephospho-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase"
                     /protein_id="HMC47882.1"
                     /translation="RLPDRPQPALITHGDMVRKRYDIVAGARTEAASGFPRVLESGLA
                     TLRIARAAKSAEEICRLDALLSLMSQVDDTCVLYRGGGDALSVVKSLAQSVLLAGGCA
                     TAEGRRRMRKLDQELIARHASPGGSADLLAATIFLDAVERQSEIRRDHSRWEEQDGAS
                     "
BASE COUNT          310 a          556 c          462 g          329 t
ORIGIN      
        1 caatcccact tgctcgctca ttgcgcaccc cctaacgctg tcttgccgtt ccagctgtct
       61 ctcaaagtca atggatcgat ctgcgaggat gtatcgagcg ctgcggttcg ctttcggtag
      121 atttcgaact gttcgctgcg atgtacaggc ggcaggccgg ccgcgacgca ccgccgcacg
      181 gctgccgcaa tgctttgcac atcgtccagg acgagctcat ccgcgactcc catggccacg
      241 cgctgctccc cgccgtcgat tgcccaaacg agcgcgtgat ccgtggaatc gaactcctcg
      301 agcccggact cctgctcgat cacctcgggg ccgttcaaac ccagccgtgc ttcgcgcgtc
      361 atgacgaggt agctcgacag acctgccgcg agcgacatgc ctccgaaaca tccgacggtg
      421 cccgcgatca cggtgatgat gggcgcgtgc cggcgcagcg caagcatcga tgccatcacc
      481 tcggcaaccg cggcgagtcc gaggttggct tcctgcaggc gcacgccgcc tgtttccagt
      541 aacaggattg cggccgtctt cgtgccattt tgcgaatcct gggccgccag atcgagagcc
      601 gtagacatct ttgcacccga cacctctccc atgctgccag cctggaagcc gccctcgagc
      661 gcgatgacga cgaccgcctc tcctgcgacg gtgcccttca agacgacgca gccatcatca
      721 gattgcggcg cgatgccttg cgcgggcaac caaggagatt cgatgcggtc aaacggaccc
      781 accagttccc gccatgagcc agaatccatc aggctttgcg ccctttctct ggcatcgagc
      841 tcaatgaaac tttgccgatt gacaaatgcc gaaatcgtgt ctgcgctgct cattgttcga
      901 tcacctctac ggcctgttcg agccttagca tcacggcgcc gggcgtcgcg cccgcatcat
      961 tgatatcgat gcgaacagcc ccgtcaaact tggagaagaa gcggtcgagc accgccttcc
     1021 agctgctact aaacccggtg acgctggtta gaatcgatac atgcgcggtg ccagtgacat
     1081 cgggctgcat cagaacttcc aattcgccgg atcccacgac accgacgtgc gccttgttgg
     1141 tgacgcgccg tgttgccgag ggataatcaa acttaagatg ctccatcttg ctcctcccat
     1201 ctgctgtggt ccctgcgtat ctcactttga cgctcgactg cgtccagaaa gattgtcgcg
     1261 gccaacaagt cagcgcttcc gccgggcgat gcatgtcttg cgatcagctc ctgatccagc
     1321 ttgcgcatgc gccgccgtcc ctcggctgtg gcgcagccac ccgccaggag caccgattgg
     1381 gccagcgact tcacgacact tagagcgtca ccgccgcctc gataaagaac acaggtgtcg
     1441 tcgacctgag acatcaggct caacaacgca tcgaggcgac aaatctcttc ggcggatttc
     1501 gccgcgcgtg caatacgcag cgtcgcgagg cctgattcga gcacgcgcgg gaacccactc
     1561 gcggcttctg tgcgggctcc cgcgacgatg tcgtagcgct ttcgtaccat gtcgccatgc
     1621 gtgatgagag cgggctgcgg cctatcgggg agtcttg
//
LOCUS       DATGBK010001534         3187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_133585, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001534 DATGBK010000000
VERSION     DATGBK010001534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3187
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133585"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..752
                     /locus_tag="VKJ77_21380"
     CDS             <1..752
                     /locus_tag="VKJ77_21380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c-type biogenesis CcmF C-terminal
                     domain-containing protein"
                     /protein_id="HMC47883.1"
                     /translation="ASAIALPWLAGGWKPMVALGILLAVWCATTMLTALAGRIAEQRG
                     PWLLRFFHVPRGFYGMLLAHFGIGIFIAGVTLVKGYETAGDARLDIGQSIETGGYTFR
                     FDGTKPVEGPNYRALRANMVVSREGHVVAVMHPEKRFFPVQKTTMTEAAVDRGVFRDL
                     YVALGDAAENSNTAWTVRVQIKPFVDWIWAGCLLMAFGGVLAASDRRYRLAVRDQRQA
                     ASGAPHVRIRTQAAIAAANVASVANVKETRS"
     gene            749..1288
                     /locus_tag="VKJ77_21385"
     CDS             749..1288
                     /locus_tag="VKJ77_21385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HMC47884.1"
                     /translation="MKRFLLPLILFAGLSVVLAASLSNDPRRLPSTFIGKQAPTFDLP
                     RLDAADRRLSPEALRGQVWVMNVWASWCESCRDEHSALVALASKNVVPIYGLDYKDEP
                     DAARQWLKQAGNPYIASMMDRSGQTGIDYGVYGVPETFVVDRRGVIRFKRSGPLTQAA
                     LDTEILPLVRSLQGEGSDE"
     gene            1281..1868
                     /locus_tag="VKJ77_21390"
     CDS             1281..1868
                     /locus_tag="VKJ77_21390"
                     /inference="COORDINATES: protein motif:HMM:NF015853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein"
                     /protein_id="HMC47885.1"
                     /translation="MNRILVALFCVSVIGVASAAANSGVLMIAEADVSAQGTASVAAG
                     VDAQVQSNVRTQADISTSAGIIATASAVPELAARIRHLESSFRCLVCQNETIADSTAD
                     LAADLRLIIHEQVQQGATDAQIRDYMVTRYGDFVLYDPPFKTLTWVLWLGPFVLLALC
                     LGVFAGIVLQRRKMTPPPLTDLQLQRARRLLDNRP"
     gene            1865..3103
                     /gene="ccmI"
                     /locus_tag="VKJ77_21395"
     CDS             1865..3103
                     /gene="ccmI"
                     /locus_tag="VKJ77_21395"
                     /inference="COORDINATES: protein motif:HMM:TIGR03142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HMC47886.1"
                     /translation="MTTFWIIAAVMLIAAVLCAVVPLMQRESAAGAPRARALSVSLYR
                     RELADADADLRTGALSPGQYASVRSDIEQRVLADTAGSTSLARRSTPRTATRAATCAV
                     LIALLPSAACLLYLKLGEPAALKLNNPLDDSLGVSHDMSSMSVEMMVSRLAFRLRDHA
                     PDPRDAAAWATLARSYTVLDRPTDAVAAYAKAVALDPGDPPLRADFADAIASADDGRL
                     AGRASEEIAAALAIDSADPKALALAASAAFDTRAYARAIGYWRRLIATLKVDSPEALQ
                     MQKNINAAEGLSAVTVDIRLADGAHVASDAAVIVTARTSDVPASTNLASAASTAGAVV
                     PPNTLLAERRLAAGELPATIVLDDSLAINTTDTLSAHQQVTVEARIVSAMGGSDLTGR
                     GDAKGLESRHASVVIAAPLP"
BASE COUNT          561 a          954 c         1047 g          625 t
ORIGIN      
        1 tggcgtcggc gattgcgttg ccgtggctcg cgggtggatg gaaaccgatg gttgcgctgg
       61 gcattctgct ggcagtgtgg tgtgcaacga ccatgctcac tgcgctggcc ggacgtatcg
      121 cggaacaacg aggaccctgg ctcctgcgat tctttcatgt gccgcgcggg ttctacggca
      181 tgctgcttgc gcacttcggc atcgggattt ttatcgccgg ggtgacactg gttaaaggct
      241 atgaaacggc cggcgatgcg cggctcgata tcgggcaatc gatcgagacc ggcggctaca
      301 cctttcgctt cgatggcacg aaaccggtcg agggtccgaa ctatcgcgca ctgcgggcga
      361 acatggtggt gagccgcgaa gggcacgtgg tcgcggtgat gcatccggag aaacgcttct
      421 tccccgtgca gaaaacgacg atgaccgaag ccgccgtcga ccgcggcgtg ttccgcgatc
      481 tctacgtcgc actcggcgat gcagctgaaa acagcaacac cgcgtggacc gtgcgcgtgc
      541 agatcaaacc gttcgtcgac tggatctggg cggggtgctt gttgatggcg ttcggcggtg
      601 tgttggcggc aagcgatcgg cggtatcggc tggccgtgcg tgatcagcgg caggcagcat
      661 cgggtgcacc gcatgtgcgt attcgaacgc aggcggcgat cgcagcggca aacgtggcga
      721 gcgtagccaa cgttaaggag acgagatcat gaaacgcttc ctgcttccgc tgattctctt
      781 cgccggcttg agtgtcgtat tggccgcgtc gctgtcgaac gatccgagac gcttgccgtc
      841 aacattcatc ggcaagcaag cgcccacgtt cgacttgccg cgtctcgatg ccgccgaccg
      901 gcgcctgtcg cccgaagcgt tgcgcggcca ggtatgggtg atgaacgttt gggcctcgtg
      961 gtgcgagtcg tgtcgcgatg aacattcggc actcgtggcg ctcgcgagca agaacgtcgt
     1021 gccgatctac gggctcgatt acaaggatga accggatgcc gcgcgacagt ggctcaagca
     1081 ggccggcaac ccgtatattg catcgatgat ggaccgatcg gggcagacgg ggatcgacta
     1141 tggcgtgtac ggcgtaccgg aaacgttcgt cgtcgaccgg cgtggtgtga tccgcttcaa
     1201 acgttcggga ccgctgacac aggccgcact cgacacggaa atcctgccgc tcgtacgaag
     1261 ccttcaaggc gagggcagcg atgaatagga tcctagtcgc gctgttttgc gtgtcggtga
     1321 ttggtgtggc gagcgcagcc gcaaattccg gtgtcttgat gattgccgag gccgatgtca
     1381 gcgctcaggg aaccgctagc gttgccgctg gcgttgacgc acaagttcaa agcaacgttc
     1441 gaacgcaagc tgatatcagc acaagcgccg gaatcattgc gacggcgagc gctgtcccgg
     1501 aacttgctgc gcgcatccgc caccttgaat cgagctttcg ctgtctcgta tgccagaacg
     1561 aaaccatcgc ggattccacg gccgatctcg ccgccgatct acgtttgatc attcacgagc
     1621 aagtccagca aggtgcaacc gatgcgcaga ttcgcgacta catggtgacg cgttacggcg
     1681 atttcgttct ctacgatccg ccgttcaaaa cgctgacgtg ggtcctctgg ctcggtccgt
     1741 tcgtgctcct cgcgctttgt ctcggggtgt tcgcaggcat cgtgctgcaa cgccggaaga
     1801 tgaccccgcc gccgctcacc gacctgcagc tgcaacgcgc aagacgtctg ctggacaacc
     1861 ggccatgact accttctgga tcatcgcggc cgtgatgttg atcgctgccg tcctgtgcgc
     1921 agtcgtgccg ttgatgcagc gggaaagtgc agccggtgca ccgagggctc gcgcgctgag
     1981 cgtgtcgctg tatcggcggg aattggctga tgcggacgcg gatctgcgca cgggcgcgtt
     2041 atcgccaggc caatatgcaa gcgtgcgcag cgatatagaa cagcgcgtac ttgccgatac
     2101 cgccggttcg acttcgcttg cacgcaggtc cacgccgcgg acggctactc gcgccgcaac
     2161 ctgtgccgtg ctgattgcgc tcctccctag cgctgcgtgc ctgctgtatc tgaagctcgg
     2221 cgaaccggct gcgcttaagc tgaacaaccc gctggacgac tcgctgggtg tctcgcacga
     2281 catgtcgtcg atgtcggtgg agatgatggt ttcccgtctc gcgtttcgtc tgcgcgatca
     2341 cgcgccagat cctcgcgatg ccgccgcctg ggccacgctc gcgcgctcgt acaccgtgct
     2401 cgatcggccg acggacgcgg tcgcggccta cgcgaaggcg gtagcgctcg atccgggcga
     2461 ccctccgctg cgggccgatt tcgccgatgc catcgcgagc gcggacgatg gccgtctcgc
     2521 cgggcgggca tcggaggaga tcgcggcggc gctcgccatc gattccgctg atccgaaagc
     2581 gctggcgttg gcggcatcgg cggcgttcga cacgcgggct tatgcccgcg cgatcgggta
     2641 ttggcgaagg ctgatcgcga cgctcaaggt ggattcgccc gaggccctcc agatgcaaaa
     2701 gaatattaat gcggcggagg gcttgagcgc ggttaccgtg gatattcgac tagccgatgg
     2761 cgcgcacgtc gcgtccgatg cagcggtaat cgtgacggct cgcacgagcg acgtgccagc
     2821 ttcgacgaac ttggcgagcg ctgcgagtac ggccggtgcg gtggtcccgc cgaacacgtt
     2881 gctcgccgag cgtcggctgg ctgcgggtga acttcctgct acgatcgttc tagatgactc
     2941 gctggccatc aacacaaccg acacgctgtc ggcgcaccag caggtgacgg tggaagcgcg
     3001 gattgtttcg gcaatgggag ggagcgacct gaccggacga ggcgacgcca agggattgga
     3061 gagtcgccat gccagcgtgg tgatcgcggc gccattgcca tagcgcctca tatcaaccgc
     3121 caacgttctc agcgttccga ttttcgaccc gctgcaaaaa cttgttaagc tcggcattcg
     3181 atcactt
//
LOCUS       DATGBK010001535         2776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_87276, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001535 DATGBK010000000
VERSION     DATGBK010001535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87276"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..222
                     /locus_tag="VKJ77_21400"
     CDS             61..222
                     /locus_tag="VKJ77_21400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004627381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HMC47887.1"
                     /translation="MSDFIKGFVKDERGVTAVEYALIAGLITAGLLLSVGGLVTKLTS
                     VFAAIVAAI"
     gene            453..1022
                     /locus_tag="VKJ77_21405"
     CDS             453..1022
                     /locus_tag="VKJ77_21405"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HMC47888.1"
                     /translation="MINAALFIGWALAVVLFDCRLRRIPNWLVIAGLAVACALVASGH
                     SPFHIDLSDAGLGLTVGLLALLPFYLIGLMGAADVKVFATLGAWCGFHALPALWIVAS
                     IAAGVHALYLLASAAIEGRRKSVAGSLESSSNSDAYLNGPHDVTGTGPERPSRYTFIV
                     GGRRATPYAALLAVSAIGSLTLHVFEAAR"
     gene            1133..1552
                     /locus_tag="VKJ77_21410"
     CDS             1133..1552
                     /locus_tag="VKJ77_21410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE family protein"
                     /protein_id="HMC47889.1"
                     /translation="MAVEFAMVFPVFFLVFYAIVTYSMVFVAQQSLTLAASEGARAAL
                     RYQPGATSAASALALRASAACTTATGLVNWLAGSAPCTATYAGCSFDATMQCVSVALN
                     YNYASRPLVPPLPLIGLPVPATLTASAMVQLNPENLF"
     gene            1586..2551
                     /gene="cpaB"
                     /locus_tag="VKJ77_21415"
     CDS             1586..2551
                     /gene="cpaB"
                     /locus_tag="VKJ77_21415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HMC47890.1"
                     /translation="MANITRILAISLIVLAVLLGIFAWSLSRRPPVPVPQVVQGQASF
                     PVVVAARDLPAGKSIDADALTLRMVPSRGAGEFADATGLVGRVPLVAITANMPLSEAN
                     LTTGLADAIAPGERAVAVRVDEGNAVGNRVRPGNFVDVFFMLKRDMSAGPGTDAEVDA
                     TQARLLLSRVRVLSFGDATLPGTSEGADPAANAANAPRSAGARTAVLAVRTADVDALT
                     LAEGAGRLVLALRNPAETDAAEPLAMAPLLASIRRSNDGASRATAGLSLEALAGTHGE
                     RSARPPAMPPLPATPSLPAARAPRVQAVANDLELIRGARREKVAY"
BASE COUNT          480 a          860 c          856 g          580 t
ORIGIN      
        1 cccaaaaaaa tgccggatca tttgccacat ggccattaaa aatatccgag gaaaagcatc
       61 atgtctgatt ttatcaaagg cttcgtcaaa gacgaacgcg gcgtcaccgc tgttgaatac
      121 gcacttattg caggccttat cacggctggt ctcctgttat ctgtgggcgg ccttgtgacc
      181 aagttgacaa gcgtgtttgc cgctatcgtg gctgctatct agcggaacgg gcttcgcact
      241 gccgtgcatc gggcgtcaca ttcttctcgc tagcaatcaa ctgactatgc cggcttattc
      301 gccggtatag cgcggtactg cctgttgttg cattaatgca aatcacacgc aggggatctg
      361 ctacgcgcaa gggtgacgcc gggcttttct aatcgactgc ttgaaagagc ggctgacggg
      421 attagtttgc ctggccgaag cgagtccata tcatgattaa cgccgcgtta ttcattggct
      481 gggcactcgc ggtcgtctta ttcgattgcc ggttgcgccg catacccaac tggctcgtta
      541 ttgcgggact ggcggtggct tgtgcgcttg tcgccagcgg ccattcgcca tttcacatcg
      601 acctgtccga tgccgggctc ggccttacag tcgggctgct agcgctcttg ccgttctatc
      661 tgattggctt gatgggcgcc gctgacgtca aggtgttcgc cacgctcggc gcatggtgcg
      721 gctttcacgc gttacccgcg ctgtggatcg tggccagtat tgccgcaggc gttcacgcgc
      781 tgtatttgct tgcgtcagcg gcgatcgagg gcagacgcaa gagcgttgca ggttcattgg
      841 agtcctcatc caattcagat gcttacctga acggtcctca tgacgtcacc gggaccggac
      901 ccgaacgacc atcccggtac acctttattg tcggaggccg tcgggcaaca ccatatgccg
      961 cgttgctcgc cgtgtccgca ataggaagcc tgacgctgca cgtcttcgag gccgcccgat
     1021 gacccctctc aaatccttgc gacccgtctc gcccgcaccc gggcgtgatc acgcacattc
     1081 ctacgcacat accaagccgc tcaacgcccg acgccgcgcg cagcgcggca ccatggcggt
     1141 ggagttcgcc atggtgtttc cggtgttctt cctcgtgttc tacgcgatcg tcacctacag
     1201 catggtcttc gtcgcgcagc aatcgctcac gttggctgca tcggaagggg cacgtgcggc
     1261 gctgcgttac cagccaggtg cgaccagcgc agccagcgcg ctcgcgctgc gcgcgagcgc
     1321 ggcttgcacg acggcgacgg gtctcgtgaa ctggctcgcg ggcagcgctc cgtgcaccgc
     1381 gacgtatgcg gggtgcagct tcgacgccac gatgcaatgc gtgagcgtcg ccctcaacta
     1441 caactacgca agccggccgc tggtgcctcc actgcctttg atcgggctgc cggtgccagc
     1501 aacgctcact gcaagtgcga tggtgcaact gaacccggag aacctgtttt aagcgttgtt
     1561 cacgtttgaa accaccaaga cgatcatggc taacatcacc cgcatccttg ctatttccct
     1621 gatcgtgctc gccgtgttgc ttggcatttt cgcgtggtcg ctctcgcgtc gtcctccggt
     1681 gccggtaccg caagtcgtgc agggtcaggc aagttttccg gtagtcgtgg cggcgcggga
     1741 tctgcctgcc ggcaagtcaa tcgacgcgga tgccttgacc ttgcggatgg tgccatcacg
     1801 tggagccggc gagttcgccg atgccaccgg gcttgtcgga cgcgtgccac tcgtcgcgat
     1861 taccgccaat atgccgctct ccgaggccaa cctcaccacc ggactcgccg atgccatcgc
     1921 acccggcgaa cgtgccgtcg cggtgcgggt cgacgagggc aatgcggtgg gcaaccgggt
     1981 gcggcctggc aatttcgtcg acgtgttttt catgctcaag cgcgatatgt ccgccggccc
     2041 gggcacggat gcggaagtgg atgcgacgca agcgcggctg ttgttgtcga gggtacgtgt
     2101 gctcagtttc ggcgatgcga cccttcccgg cacgtcggaa ggagccgacc ccgcagccaa
     2161 cgcggccaat gccccgcgca gtgcgggtgc gcgtacagcg gtgctggccg tgcgcaccgc
     2221 tgatgtcgac gcgctcacgc tcgccgaggg cgctggccgc ctggtgttgg cgctgcgcaa
     2281 tcccgccgag acagacgcag ccgaaccgct tgccatggcg ccacttcttg catcgataag
     2341 gagatcgaac gatggtgcgt cacgtgcgac cgcgggactg tcgctggagg cgctggccgg
     2401 tacccatggc gagcggtcgg cgcggccgcc cgccatgccc ccgttgcctg ccacgccctc
     2461 cctgcctgcg gcgcgcgcgc cgcgtgtcca ggcggtggcg aatgatctcg agttgattcg
     2521 tggtgcccgt agggaaaagg tggcgtactg aaaatgatga ccgtgccgta aacaaatgta
     2581 gaaggacgag tagcagcagc cagcatcaaa tgaaagttcg gggccatgcc gccgtatggc
     2641 gacaacgcag tacgcagtcg ataaaaaaat tatgaaagcc aagggtttct atcgaggacg
     2701 cagcgtctct gacgcgcgtc ggttattgct cgccgcgctg atatgcacgt gtgcggtggc
     2761 tccgctcgcc ggtgcg
//
LOCUS       DATGBK010001536         2000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_203426, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001536 DATGBK010000000
VERSION     DATGBK010001536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203426"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1054
                     /locus_tag="VKJ77_21420"
     CDS             <1..1054
                     /locus_tag="VKJ77_21420"
                     /inference="COORDINATES: protein motif:HMM:NF014769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47891.1"
                     /translation="MREGYYSDTYFNRARDILKADGHHPRVRMQVFQRRSAVLCGIDE
                     AIAILKLCAGYHDKNGMWVDGWHALNVHALYDGDKIGAYETIMTIEGDYATFAHLETC
                     YLGVLSRRTRIATNARAIIDAAAGKDVLYFPARFDHHLVQTGDGYAAYISGALGVSTD
                     ANAEWWGSKGMGTVPHALIAAYGGNTVLATQKFAEFIDPSVNVISLVDFENDCVGTSV
                     AVARALGDRLWGVRLDTSGTLVDASIVPQMGTFKPTGVIPELVRNVRAGLDNAGFPNV
                     RIVVSGGFNAEKIRLFETEKVPADAYAVGSAFFDNAGHYDFTADIVTMKVGSQWHECH
                     KVGRPERPNPRLEKVD"
     gene            complement(1051..1605)
                     /locus_tag="VKJ77_21425"
     CDS             complement(1051..1605)
                     /locus_tag="VKJ77_21425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012760933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HMC47892.1"
                     /translation="MDIEGKRVAALVGDGFEESELLEPRRALEEAGAIVTIVGMDEKS
                     LTKIRGKKGLDEGQSVKAEELVADVTADDFDALLIPGGWSPDHIRTNKDVQRFVKEFD
                     ASKKPMFVICHGPQVLISAQIVRGRTLTGYASIADDIRNAGGLYRDQPVVTDGNWVTS
                     RNPQDIPMFNRGIIEKLASVAAPV"
     gene            complement(1682..>2000)
                     /locus_tag="VKJ77_21430"
     CDS             complement(1682..>2000)
                     /locus_tag="VKJ77_21430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47893.1"
                     /translation="PDAVLVIGIPDVSKFPFFASGALTPVQLSALSSDTVFANAALQA
                     AAADAGLKFAYTDLIAASVNAPGQFSGAAAFSSDHFHYIDTGYSAIESTALGAFIAFY
                     PTF"
BASE COUNT          419 a          639 c          572 g          370 t
ORIGIN      
        1 gatgcgcgag ggatactact ccgacacata cttcaaccgg gcacgggata tcctcaaagc
       61 cgacggccac catccgcgcg tgcgcatgca agtcttccag cgccggagcg ccgtgctctg
      121 cggtatcgac gaagcaatcg ccattctcaa gctgtgtgcg ggctatcacg acaagaacgg
      181 catgtgggtc gacggctggc acgcactcaa cgttcacgcg ctttacgatg gcgataagat
      241 cggcgcatac gaaacgatca tgacgatcga aggcgactac gcaacgttcg cgcatctgga
      301 gacatgctat ctcggcgtgc tttcacgccg cacgcgcatc gcaaccaacg cgcgcgcaat
      361 catcgatgcc gcagcgggca aagacgtgct gtatttcccc gcgcgcttcg atcatcactt
      421 ggtgcaaacc ggcgacggct acgccgccta catcagcggc gcactcggcg tttcaaccga
      481 cgcaaacgcc gaatggtggg gcagcaaagg catgggaacc gttccgcatg cactgatcgc
      541 cgcctacggc ggcaacaccg ttctcgcaac ccaaaaattc gccgaattca tcgacccgtc
      601 ggtcaatgtc atctcgctcg tcgacttcga aaacgactgc gttggcacat cggtcgcggt
      661 cgcgcgggcg ctcggcgacc gtctctgggg cgtccgccta gacacgtccg gcacgctcgt
      721 cgatgcctcg atcgtcccgc aaatgggcac gttcaagccg accggcgtga tccccgaact
      781 cgtacgtaac gtgcgcgccg gcctcgacaa cgccggcttt ccgaacgtgc gaatcgttgt
      841 aagcggcgga ttcaacgccg aaaagatccg cctattcgaa acggaaaagg tgccggccga
      901 cgcctacgcc gtcggcagcg ccttcttcga caacgccggc cactacgatt ttacggccga
      961 catcgtcacc atgaaagtcg gctcgcagtg gcacgaatgc cacaaagtcg gccggcccga
     1021 acgccccaac ccccgcctag aaaaagtcga ctaaaccggg gcggcgacgc tcgcgagttt
     1081 ttcgatgatg ccgcgattaa acatcgggat gtcctgcggg ttacgcgagg tgacccagtt
     1141 gccgtcggtg acaacgggtt gatcgcgata cagcccgccc gcattgcgaa tgtcgtcggc
     1201 gattgacgcg tagccggtga gcgtacgtcc gcggacgatc tgcgccgaga tgagcacctg
     1261 cggcccgtgg cagatcacga acatcggctt cttggacgcg tcaaattctt tgacgaaacg
     1321 ttgcacgtct ttgttcgtgc ggatgtgatc cggcgaccag ccgccgggga tgagtaacgc
     1381 gtcgaagtcg tcggcggtta cgtcggcaac cagctcttcg gctttgacac tctggccctc
     1441 atcgaggccc tttttgccac gaattttcgt cagcgacttt tcgtccatgc cgacgatcgt
     1501 aacgatcgcg cccgcttctt caagcgcgcg acgcggttcg agtaactcgg attcttcgaa
     1561 tccgtcgccg accagcgcgg cgactcgctt cccttcgata tccatccccg tgccttccgt
     1621 gcggtgcgcc ccgggccctt atccttcgat taacggccca gaaaaggagc ctcccgcctg
     1681 cttagaaggt cgggtaaaag gcgatgaatg ctcccagcgc cgtcgactcg atcgccgaat
     1741 agccggtatc gatataatga aaatggtcgc tggaaaacgc cgctgccccg gaaaattgtc
     1801 cgggcgcatt aaccgaagca gcaatgagat ccgtatacgc gaatttcaat ccggcatcgg
     1861 ccgccgcagc ctgcaatgca gcgttagcga aaaccgtatc cgaactgagc gcgcttagct
     1921 gcaccggcgt caacgcacca ctggcgaaga acgggaattt gctaacgtcg gggataccga
     1981 taacgaggac ggcgtcgggt
//
LOCUS       DATGBK010001537         2074 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_318820, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001537 DATGBK010000000
VERSION     DATGBK010001537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318820"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..608)
                     /locus_tag="VKJ77_21435"
     CDS             complement(48..608)
                     /locus_tag="VKJ77_21435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HMC47894.1"
                     /translation="MSAPFFTIGHSTRSLAEFIGLLKESEIDMLVDVRSIPRSRTNPQ
                     FNLDTLPASLRAEGVAYVHMAALGGRRGKRNTDQASPNTYWTHPAFRNYADYALGDPF
                     REALEELLDLGRARRCAIMCSEAVWWRCHRRIVADYLLARGETVLHIMGPHQVRPATL
                     TPEALPRPDGTVIYAESSAKPGATPN"
     gene            complement(669..1088)
                     /locus_tag="VKJ77_21440"
     CDS             complement(669..1088)
                     /locus_tag="VKJ77_21440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HMC47895.1"
                     /translation="MNDMIQNTGQEVRHEGGCACGAWRFTATAGPDRVGLCHCMTCRR
                     VHGSAFGAYAVYAEEQVTMSGATRAWQSSADARRHFCPVCGSVAFMAYVNTDEIDLPI
                     GAFDETGFLDPSYELWCIRREPWLSGNGRHEYPEDRS"
     gene            1297..>2074
                     /locus_tag="VKJ77_21445"
     CDS             1297..>2074
                     /locus_tag="VKJ77_21445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HMC47896.1"
                     /translation="MKHVSLLALLPSGATVAPATGPYATPAAPDLAAYVLSHERYDAA
                     ENAPSARKDYKNVHVADVMTDEYVFPLGETGKSIVLSGYQIAAGFLAERAADEWLGLA
                     RQQHAANGGADNDGTRHVPDPAEADQLMDRALESAERILAPFEAAPVVSLFETHYRGA
                     REFLRLSWEGLPEDLVPKSRRPAVVSKAAADLAPASARQDYDPYGLEGTSDYDVDKPL
                     AYREKTGPFLLTMTYRHEYPQVDDERLGTAFAVFHEAGTDI"
BASE COUNT          406 a          655 c          624 g          389 t
ORIGIN      
        1 ataggcaaac gattgccttc tgcttatgca tcggcgccag gagactgtca attcggcgtc
       61 gcccccggtt tagcgcttga ttcggcgtag atcacggtgc cgtcgggccg cggtaaagcc
      121 tccggtgtaa gcgtcgcggg cctgacctga tgcgggccca tgatgtgcag cacggtctcg
      181 cctcgcgcga gcagataatc cgcgacaatc cgccgatgac accgccacca cactgcttcc
      241 gagcacatga tcgcgcagcg ccgcgcgcgg ccgaggtcta gcagttcttc cagggcttcg
      301 cggaaagggt cgcccagcgc gtagtcggcg tagttgcgga acgccggatg ggtccagtag
      361 gtgttcggtg acgcttggtc cgtgttgcgc ttgccgcgcc ggccgcccag cgccgccata
      421 tgtacatagg caacaccctc tgcacgcagc gaagccggca gtgtgtccaa gttgaattgc
      481 ggattggtcc gcgatctcgg aatgctgcgg acatcgacca gcatgtcgat ctcgctttct
      541 ttcagcaagc cgataaattc cgccagcgaa cgggtcgaat gcccaatggt gaaaaaaggc
      601 gcgctcatct aatgttcatc tggcgatcca ttggtcccgc aatccggtgc gctcgtcagg
      661 accggtgttc aggaccggtc ttcgggatat tcgtgacgcc cattgccgga cagccacggc
      721 tcgcggcgga tgcaccagag ttcataagat gggtcgagaa aaccggtttc gtcgaaggcg
      781 ccaatcggca agtcgatctc gtcggtgttg acatacgcca tgaacgcgac cgacccgcat
      841 accgggcaga agtggcggcg ggcatcggcg gagctttgcc aggctctggt cgcgcccgac
      901 atcgtcacct gctcctccgc ataaaccgcg tacgcgccaa acgccgaacc atgcacgcgg
      961 cggcatgtca tgcaatggca aagaccgacg cgatccggtc ccgccgtcgc cgtaaagcgc
     1021 cacgcaccgc atgcgcagcc tccttcatgt cgaacttcct gaccagtgtt ctgaatcatg
     1081 tcgttcatcg cagcctccct ataatctggt atctgttatc tactggcgtg caggatcctg
     1141 atcctgctac tcaggcagca ccaggcagca ccgaccatgg caacaatctt agtagcaatc
     1201 cgcgtggtag caacctgcgc gccgcatcgg ctttacgacg tgcaaaaaag tgcggttttg
     1261 ctacgatgac acccctacga gacggagatg gcactcatga agcacgtatc cctgctggct
     1321 ctgctcccct ccggcgcgac ggttgccccg gcgaccgggc cgtacgcgac accggccgct
     1381 cccgatctcg ctgcttacgt gctgtcgcac gaacgctatg acgctgctga gaacgcgccg
     1441 tctgcgcgca aggattacaa aaacgtgcac gtcgcggatg tcatgaccga cgagtacgtg
     1501 ttcccgcttg gagaaaccgg caagtcgatc gtgctctctg gttatcagat tgcggcggga
     1561 tttctcgctg aacgggccgc agacgaatgg ctcggactcg cgcgccagca gcacgcggcc
     1621 aatggcggcg cagacaacga tggcacgcgg cacgtacccg accccgctga agccgatcag
     1681 ttgatggatc gtgcgctcga gtccgcggaa cgcattcttg cgccgttcga ggccgcgccg
     1741 gtcgtatcgt tattcgaaac gcactatcgc ggcgctcgcg aatttcttcg cctgagctgg
     1801 gaaggtctgc cggaagacct ggtgcccaaa tcgcgacggc cggccgtggt atcgaaagcg
     1861 gctgcagatc tggcgccggc atcggccaga caggactacg acccctacgg gctggagggc
     1921 accagcgatt acgacgtcga caagccgttg gcatatcggg aaaagaccgg cccgttcctg
     1981 ctgaccatga cctatcgaca tgaatatccg caggtcgacg acgaacggct cggcaccgcg
     2041 ttcgcggtat ttcacgaggc gggcacggat atcg
//
LOCUS       DATGBK010001538         2118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_156903, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001538 DATGBK010000000
VERSION     DATGBK010001538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156903"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..790
                     /locus_tag="VKJ77_21450"
     CDS             137..790
                     /locus_tag="VKJ77_21450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR family protein"
                     /protein_id="HMC47897.1"
                     /translation="MLAKFFRVVVACIGLGLLMVAAPAAPGAAAEVATVTALVGSVAI
                     QSASGVQRVAAVGTEIDNGDTVETSAASEVVMIFTDHQRVYLKPGTVFRVDDFNYAAD
                     DASQSRSFLSLVKGGLRMLDGLVATQGKGENYRLKTPTSTIGIRGTEYSVTDCGDSVA
                     CEGDQVVVYSGQIVVSNAVEKRIVRAGEGVIVPSPRSQFRVLPAERVKPVVPSAACQ"
     gene            805..>2118
                     /locus_tag="VKJ77_21455"
     CDS             805..>2118
                     /locus_tag="VKJ77_21455"
                     /inference="COORDINATES: protein motif:HMM:NF013109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HMC47898.1"
                     /translation="MEAAKNVPRIPTSMQLSTLGVDTLASSLIAVLTLCYAVGYGAMI
                     FSGGLAPWAQNGLPTALISCVVVSLVVALTTSVPFMISGPDSNAAALLAGLAAGVAMD
                     VRDGGGGDRAALASVLVTLAVASISTGVVLYALGRWKHGNAIQYIPFPVVGGFLAGTG
                     FLIVEGAFRIITNEPITFATLPELVRLPWIEVVPALLVAVGLLVGTRLTRRIGLMPLV
                     IVLGIVVFYAGLRVSGQSVDGARQMGLLFHLESIRNLRLPFTQLHDAWFTPIFAHATE
                     ILAVAAVSAMTVLLSATGIGLSTARDIDFNRELRSAGFANVATGLVGGIVGYQSMSRT
                     LMIWRAGVTSRRAGVLSGLFCLIVIVGFPGLIELIPKPVLAGLQLYLGSAMLIEWLFN
                     SIKRLPWHEYLLIPLIMVIIASYGIVAGVALGVVAASLLFVVRYGR"
BASE COUNT          321 a          641 c          721 g          435 t
ORIGIN      
        1 attggcgcat cgatcagcac acccggcaat tatctgctga cggcgtccta tgcccatacg
       61 ctcggctacg tgccgtccac ttttggaacc ggccacgtga accgcgcgtg gctgaccctg
      121 gctaagtcct tctgacatgc tcgcaaaatt cttccgtgtg gtcgttgcgt gcatcggcct
      181 tggactattg atggttgccg caccggcggc gccgggcgcg gcggccgagg tcgcgaccgt
      241 cacggcgctg gtcggcagcg tggcgatcca gtccgccagc ggcgtccagc gggtagcggc
      301 cgtcggcacg gagatcgaca acggcgatac ggtcgagacc tcggccgcgt ctgaagtggt
      361 catgatcttt accgaccatc agcgcgtgta cctgaagccg ggcacggtgt ttcgcgtcga
      421 tgacttcaac tacgcggccg atgacgcatc gcaaagccgc agcttcctgt cgctcgtgaa
      481 gggcggcctg cgcatgttgg acggactcgt cgccacgcag ggcaagggtg agaactatcg
      541 gttgaagacg ccgacttcca ccatcgggat tcgggggacg gaatattcgg tgaccgattg
      601 cggcgacagc gttgcttgcg agggcgacca ggtcgtggtg tattccggcc agatcgtggt
      661 gagcaatgcc gtcgagaaac gaattgttcg cgccggcgag ggcgtgatcg tgccaagccc
      721 gaggtcgcag ttcagggtat tgccggcgga acgggtaaag ccggtggtgc cgtcggcggc
      781 ctgccagtaa gggaagaaac cggaatggaa gccgccaaga acgtcccgcg catcccgaca
      841 tccatgcaac tgtccacgtt gggtgtggac acgctcgcca gctcgctcat tgccgtgttg
      901 accttgtgct acgcggtggg ttacggagcg atgatcttca gcggcggcct cgcgccgtgg
      961 gcgcaaaacg ggttgccgac cgcgctgatc agctgcgtcg tcgtttcgct ggtggtggcc
     1021 ttgaccacgt cggtaccgtt catgatcagc ggccccgatt caaacgcggc cgcgctgctc
     1081 gcgggcctcg ccgcaggggt tgccatggat gtgcgcgacg gtggaggcgg cgaccgcgcg
     1141 gcgctcgcgt ccgtgctggt cacgctcgcg gtggcgtcca tcagcacggg tgtcgtgctg
     1201 tacgcgctgg gccgctggaa gcacggcaac gcgatccagt acatcccgtt tccggtcgtc
     1261 ggcgggtttc tcgccggcac gggtttcctg attgtcgaag gcgcattccg gatcattacc
     1321 aatgagccga tcacgttcgc cacgctgccg gagctggtcc gcctgccgtg gatcgaagtc
     1381 gtcccggcgc tgctggtggc ggtggggctt ctcgtcggca cgcggctgac aagacgcatc
     1441 ggactcatgc cgctggtcat cgtgctcggg atcgtggtgt tctacgcggg cttgcgcgtg
     1501 tcgggccaaa gcgttgacgg tgcgcgccag atgggcttgc tgtttcacct cgagtcgatc
     1561 cgcaacctgc gcctgccgtt cacgcagttg cacgacgcgt ggttcacccc gatcttcgcg
     1621 cacgcgactg aaatcctcgc ggtagccgcg gtgtctgcca tgacggtgtt gctgagcgcg
     1681 acgggtatcg gcctgtcgac tgcgcgtgac atcgacttca accgggagct gcgctcggcg
     1741 ggtttcgcca atgtggcgac cgggctggtt ggcggcattg tcggctatca gtcgatgagc
     1801 cgcacgctga tgatctggcg cgccggcgtg accagccgtc gtgccggcgt gctgagcggg
     1861 ctcttttgcc tgatcgtgat cgtcggattt ccgggtctga tcgagctgat tcccaagccc
     1921 gtgctggcgg gtctgcagtt gtacctaggc agcgcaatgt tgatcgaatg gctgttcaat
     1981 tcgatcaagc gcctaccttg gcacgaatac ctgctgattc cattgatcat ggtgatcatc
     2041 gccagctacg gcatcgtagc cggcgtcgcg ctcggcgtgg tcgccgcgag cctgctgttc
     2101 gtggtgcgtt atggccgc
//
LOCUS       DATGBK010001539         2537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_179756, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001539 DATGBK010000000
VERSION     DATGBK010001539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179756"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(11..1612)
                     /locus_tag="VKJ77_21460"
     CDS             complement(11..1612)
                     /locus_tag="VKJ77_21460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC47899.1"
                     /translation="MTPDTAAPAAPIEAGQLLPFRESVLAMLGVSFVAMLVALDQTIV
                     GTALPRIVADLKGFDLYAWVATAYMLTSVITIPIFGRLGDLFGRKPFLMAAIILFTIA
                     SVMCGMAGNMMFLVIARGLQGIGGGILVGTMFATVADLFPDPKLRLRWLVFVSSAFAL
                     ANIVGPTLGGVLTQYGGWRLVFFVNLPVGIVSLLFVHAFLPHLRRPRSAGPVKLDWVG
                     ALVLASTFGGLQLVIEWVPNEGITPLTCAVGFLTLTGAAVLLFWEKRMTYPIVPIDML
                     LDRKLAALFAMAVLGGFSLFSLVFYVPLLFQGGFAMSPHDSGMLITPLLLGTTVGSVL
                     NNRIVTRIRHANGVMYIGFALFACAALCLVAITGTVPHLVWMACMGFSGVGLGLVVSN
                     LTLFSQQLVARDHLGAATALLQSLRLFGGMLGTAMTGALLGHLYTSGVHRSLDTYQAT
                     QWFKSFASPELLIDRAEQAALIGRLIMAGHAGDAMMQSARGALIESIHVGLGLAAAAA
                     IVGLCLAWFVPPVRVDRLDTGTRTR"
     gene            2106..>2537
                     /locus_tag="VKJ77_21465"
     CDS             2106..>2537
                     /locus_tag="VKJ77_21465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1223 domain-containing protein"
                     /protein_id="HMC47900.1"
                     /translation="MRASSILSLAALLVAFSAATASAASANACSASSPDHRAALVELY
                     TSEGCNSCPPADNWLSELDHARKTSTIVPLALHVDYWDSWAWKDRFAQAAFTTRQQQL
                     TYTGGGHVVYTPEIFVGGRELRSWSSDASFESRIQQLNSETP"
BASE COUNT          575 a          805 c          717 g          440 t
ORIGIN      
        1 gatggcgctt ttaacgcgta cgggtccccg tatccagccg atcgacccgc actggcggca
       61 cgaaccaggc aaggcaaagc cctacgatcg ctgccgcagc cgctagccca agtcccacgt
      121 gtatcgattc gatcaacgca ccgcgcgccg actgcatcat cgcgtcgccg gcatgacccg
      181 ccatgatcag gcgaccaatc agcgccgcct gttccgcgcg atcgatcagc aattccggac
      241 tggcgaatga cttgaaccac tgcgtcgcct gatacgtatc cagcgaccga tgcacgccgc
      301 tcgtatagag gtggccgagc aacgcgcccg tcatggccgt gccaagcatg ccgccaaata
      361 atcgcagcga ttgcagcagt gccgtcgcgg cgccaagatg gtcgcgcgca acgagttgct
      421 gcgaaaagag cgtgaggttc gacacgacca gacccagccc gacgccgctg aatcccatgc
      481 acgccatcca cacaagatga ggcacggtcc ccgtgatcgc gacgagacaa agcgcggcgc
      541 acgcgaacag cgcaaagccg atatacatca caccattcgc atgcctgatg cgcgtaacga
      601 tccggttatt caacacgctg cccacggtcg tacccagcag caacggcgtg atcagcatgc
      661 ctgagtcatg cggcgacatc gcaaagccgc cttgaaatag caagggcacg tagaagacca
      721 gcgagaagag cgagaaacca ccgagcaccg ccatcgcgaa caacgccgcc aactttcgat
      781 ccagcagcat gtcgatggga acgatcgggt aagtcatgcg tttttcccag aacagcagca
      841 ccgctgcgcc agttagggtg aggaaaccca ctgcacaggt gaggggtgtg attccttcat
      901 tcgggaccca ttcgatcacc agttgcagcc cgccgaacgt ggacgccaac accagcgcgc
      961 caacccagtc cagctttacc gggccggctg aacgcggcct ccggagatgt ggcaggaaag
     1021 cgtgcacgaa cagcaacgag acgataccca ccggcaagtt gacgaaaaac acgagccgcc
     1081 agccaccgta ctgggtcagc acgccgccta gcgtcgggcc aacgatattc gccaaagcaa
     1141 acgccgaact gacaaacacc agccaacgca ggcgaagctt cgggtcggga aaaagatcgg
     1201 cgaccgtggc gaacatcgtg cccaccagga tgccgccgcc gatcccttgc aagccgcgcg
     1261 cgatcacgag gaacatcata ttgcccgcca tgccgcacat gaccgacgcg atcgtgaaga
     1321 gaataatcgc ggccatcaag aacggcttgc ggccaaacaa gtcgcctagc cgtccgaaga
     1381 tcgggatcgt gatgaccgat gtcagcatgt acgcggtcgc gacccatgca tacagatcga
     1441 atcccttgag atcggcgacg atacgcggca gcgctgttcc cacaatcgtc tgatcgagag
     1501 cgaccagcat cgctacaaac gaaacgccaa gcatcgccag taccgactcg cggaacggca
     1561 gcaactgtcc agcttcaata ggtgcagcgg gtgcagcggt gtccggggtc atggcgttct
     1621 cctgatgctg tcgggaactg cggtgctggc ggtctacgcc gggttagcgt gcctcaggcg
     1681 gcgtgcgtgc gcaagttaag tcgtgaggca cgccaagatg ggcagcaacc gtgatgttgg
     1741 tagttcggtt acctattcga cacggttaca cgtatcagat cacttcctgt gaatcttcca
     1801 tgcgctggcc ggcgcgcttg gtgtttggct tgccctcggg agtttttatt accgcagtgt
     1861 tatatacgtt tcacacgagc ttgcggatgc accaagccaa tttcgcgttg gctgtaaccg
     1921 gtttttacgg agcgacgaaa tacctatcag gcgacgcgac ttcttgatca ggcattcgcc
     1981 agccttattt gaactgcgaa taaataccga cgctcgtcaa tcttgacgac gatggaccgt
     2041 gaccgcggtt ctgccgaacc gcgtcacgtt ctacgacatc cttcctttta ccttcggagc
     2101 ccatcatgcg tgcttcatcg atactgtccc tcgcagcgct gctcgttgcc ttctccgccg
     2161 ccacggccag cgccgcgtcc gcaaacgcat gcagcgcgtc gagccccgat catcgcgccg
     2221 cgctcgtcga actctatacg agcgagggtt gcaacagttg cccgcctgcc gacaactggt
     2281 tgagcgaact cgatcatgcc cgcaagacca gcacgatcgt accgctggcg ctgcatgtgg
     2341 actactggga tagctgggcg tggaaggatc gttttgcgca agccgcattc accacgcgac
     2401 agcagcaact gacctacacg ggcggcggcc acgtggtgta cacgccggag attttcgtag
     2461 gcggccgcga gttgcgcagc tggtcgagcg acgcaagttt cgagtcccgc attcaacagt
     2521 tgaatagcga aacccca
//
LOCUS       DATGBK010001540         6546 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_133617, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001540 DATGBK010000000
VERSION     DATGBK010001540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6546
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133617"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..852
                     /locus_tag="VKJ77_21470"
     CDS             <1..852
                     /locus_tag="VKJ77_21470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006764816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HMC47901.1"
                     /translation="LGDPPLFLGFLNGVSFFWTTVHLAAPTLFICVVLLALFYALDRY
                     YFAKEQVVHRSEVKAPLSVDGKINFVLLAAVVALVLMSGLWKPGIEFDVFGTHVALQN
                     AVRDVLLVVVTLLSLLLTPKSARAGNAFNWAPIEEVAKLFAAIFITIAPVIMILRAGA
                     DGAFAGIVHLVTDASGKPIDIAYFWATGLLSSFLDNAPTYLVFFNLAGGDAPTLMTTG
                     ATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGIVMPGFFAYVGWSAVILLPLFL
                     LTGWLFF"
     gene            862..1842
                     /locus_tag="VKJ77_21475"
     CDS             862..1842
                     /locus_tag="VKJ77_21475"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HMC47902.1"
                     /translation="MKKVLVARPIFPDVIERLRQYFEVDANPGAPLAADEFARRMADR
                     DGALLAGDPVTAKVLEGAPNLKVVSNMAVGYNNFDMQALNAHGVLGTNTPDVLNESTA
                     DFGWALMMAAARRIAESEHFLRAGKWGTWSYDAFLGADVCGSTLGVLGMGRIGQALAR
                     RARGFNMRVIYHNRSRVAPEIEAELNAEYVSKADLLKRADHVVLVLPYTAENHHTIGA
                     AELAAMKPTATLTNIARGGIVDDAALIQALRNKTIAAAGLDVFEGEPNFNRDFLMVPN
                     VVLTPHIASATESTRRAMANLAADNLIAALGEGPRAGNPPNPINPEVLKK"
     gene            1845..3320
                     /gene="rmuC"
                     /locus_tag="VKJ77_21480"
     CDS             1845..3320
                     /gene="rmuC"
                     /locus_tag="VKJ77_21480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HMC47903.1"
                     /translation="MLLLLSVGVAVLAIALVITLMLLLRPKRETDVEEQFEALADRIV
                     DMGEAHARAQERLERNVRGEVTETSRASRTEAGTAFAQFQQTLATQLASMANVQNTQL
                     EAFSRQLVTLTESNALQSQHARDEQSQALKRFGDALTLQLAQMSESNDRRLSEVRATL
                     EARLKDIEANNATKLEEMRRTVDEKLHATLEQRLGESFRLVSDRLEQVHRGLGEMQTL
                     AAGVGDLKKVLTNVKTRGTWGEVQLESLLEQLLTPDQYAKNVATIPKSNDRVEFAIKL
                     PGRHDAPGQSGANAVATPVWLPIDAKFPREDYERLIDAQDRADVVAVEEASRALEGRI
                     RAEAKAIAQKYVAPPHTTDFALLFLPTEGLYAEILRRPGLTDFLQREYRVSVTGPTTL
                     TALLNSLQMGFRTLAIEQRSSEVWQVLGAVKTEFRKFGEVLSKTRSQLEAVTRSIESA
                     ETRTRQMSKKLRDVEALPGEQVANLLGDEREEPAERDEPGA"
     gene            complement(3317..3805)
                     /locus_tag="VKJ77_21485"
     CDS             complement(3317..3805)
                     /locus_tag="VKJ77_21485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC47904.1"
                     /translation="MSDQIRPAAPADVGAIFSLMLELAEFEKLMHMFIATEGGVHDAL
                     FGARPCAEAMVAEEDGRIVGYALFFQNYSTFLGKRGLYLEDLYVKPATRGSGLGTKML
                     RALAALAVERQCGRFEWTVLDWNQNAIGFYEKMGATVLPDWRIVRITGDALATLASPA
                     AD"
     gene            complement(3805..4080)
                     /locus_tag="VKJ77_21490"
     CDS             complement(3805..4080)
                     /locus_tag="VKJ77_21490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004192965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47905.1"
                     /translation="MKKQISFIAPGQTAKALILVYLTFSVPIVLLGVLVAFFRYGSVE
                     LSTVTSALLLNAILGFILLWIACHAYNWVASRFGGIEIVLSDAPEEA"
     gene            complement(4215..5548)
                     /gene="glp"
                     /locus_tag="VKJ77_21495"
                     /pseudo
     CDS             complement(4215..5548)
                     /gene="glp"
                     /locus_tag="VKJ77_21495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191976.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:1990586 - divisome complex [Evidence
                     IEA];
                     GO_function: GO:0061599 - molybdopterin molybdotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gephyrin-like molybdotransferase Glp"
     gene            complement(5721..6353)
                     /gene="mobA"
                     /locus_tag="VKJ77_21500"
     CDS             complement(5721..6353)
                     /gene="mobA"
                     /locus_tag="VKJ77_21500"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006053285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HMC47906.1"
                     /translation="MAGPTGSPVQKRDITGVVLAGGLGSRMGGIDKGLQPLDLEPLAL
                     HALRALKPQCGAMLISANRSLEIYAQLGMPFQAKVIVDAFPDFPGPLAGISAALHAAQ
                     TEFVLFVPCDAPFVDAHLAERLFEGLSAGQADIAVAVVVDAAGERHAHPVFALLRASL
                     VEDLDAFVLAGERKVRAWYARHKTVEVTFDNERAFYNVNDLQQLADLNRN"
     gene            complement(6379..>6546)
                     /locus_tag="VKJ77_21505"
     CDS             complement(6379..>6546)
                     /locus_tag="VKJ77_21505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HMC47907.1"
                     /translation="LRALIRSGASDATVATAIARIWEARTDRYSELRGSNALPAADPD
                     APRVEMSYIGG"
BASE COUNT         1298 a         1983 c         2063 g         1202 t
ORIGIN      
        1 ctcggggatc cgccgctgtt cctcggcttc ctgaatggcg tgagtttttt ctggaccacg
       61 gtgcatctcg ccgcgccaac gctcttcatc tgcgtggtcc tgctggcgct tttctacgcg
      121 ctcgaccgct attacttcgc caaggaacaa gtggtgcatc ggagtgaagt gaaagcacca
      181 ttgagcgtgg atggaaagat caatttcgtt ttgctcgccg cggtggtcgc cctggtgctg
      241 atgagcggct tgtggaaacc gggcatcgag ttcgatgtat tcggtacgca cgtcgcgttg
      301 cagaacgccg tgcgcgatgt gctgcttgtc gtggtgacgc tcttgtcact cttgcttacg
      361 ccgaaaagcg cgcgcgcggg caacgcgttc aactgggcgc ctattgaaga agtcgcgaag
      421 ttgttcgccg ccatctttat caccatcgcg cccgtgatca tgattctgcg cgcgggtgcg
      481 gacggcgcgt tcgccggcat cgtgcacttg gtgaccgatg caagcggcaa accaatcgac
      541 attgcgtact tctgggcgac gggactactg tcgtcgttcc tcgacaacgc gccgacttat
      601 ctcgtgttct tcaaccttgc cggcggcgat gccccaacgt tgatgacgac cggcgccacc
      661 acgctcgccg ccatctcggc cggtgctgtg ttcatgggcg cgaacagtta catcggcaac
      721 gcgcccaact tcatggtcaa ggcgatagcc gaatcacgcg gcattgtcat gccgggattc
      781 ttcgcgtatg tcggctggtc ggcagtcatt ttgctgcctt tgttcctgct tactggatgg
      841 ttgttctttt aggagaagtc gatgaagaaa gtgctggttg cccgccccat tttcccggac
      901 gtgatcgaac gtctccggca gtattttgaa gtcgatgcca atccgggcgc accgcttgcc
      961 gccgacgaat tcgcgcgccg catggccgat cgcgacggcg ctttgcttgc aggcgatccc
     1021 gtcacggcga aggtcctgga aggcgctccg aatctgaagg tcgtgtcgaa catggcggtc
     1081 ggctacaaca acttcgacat gcaggcgttg aacgcgcacg gcgtgctcgg caccaacacg
     1141 cctgacgtat tgaacgaaag cacggcggac ttcggctggg cactgatgat ggccgccgca
     1201 cggcgtatag cagagtcgga gcatttcttg cgcgcgggca agtggggcac atggtcctac
     1261 gacgcgttcc tcggtgccga cgtatgcggc tccacgctcg gggtgctcgg catggggcgc
     1321 atcggccagg cactcgcccg gcgcgcgcgc ggtttcaaca tgcgcgtgat ctatcacaac
     1381 cgttcgcgcg tcgcgccgga gatcgaagcg gagctgaacg cggagtacgt gtcgaaggct
     1441 gacttgctga aacgcgctga ccacgtcgtg ctggtgctgc cgtacaccgc ggagaatcac
     1501 cacactattg gcgcggctga actggcggcc atgaaaccta cggctacgct gacgaacatc
     1561 gcacgtggcg ggattgtgga cgacgccgcg ttgatccagg ccttgcgtaa caagaccatc
     1621 gcggcggcgg ggctcgacgt gttcgaaggc gagccgaatt tcaatcgcga tttcctgatg
     1681 gtgccgaacg tagtgctgac gccgcatatt gcgagcgcga ccgaatccac gcgtcgggcc
     1741 atggccaatc tcgcggctga caacctgatc gccgcgttgg gcgaaggtcc gcgcgcaggt
     1801 aatccgccga acccgatcaa tccggaagtc ctgaagaaat gaccatgttg ttgctgttga
     1861 gcgtgggtgt cgctgtcctc gcgatcgctc tggtgatcac gttgatgctg ttgttgcggc
     1921 cgaagcgcga aacagatgtc gaggagcagt tcgaggcgct ggccgatcgg attgtcgata
     1981 tgggcgaagc gcatgcgcgc gcccaggagc ggctcgaacg taacgtgcgt ggcgaagtaa
     2041 cagaaacctc ccgcgcgtcg cgtaccgagg cgggtacagc gttcgctcaa tttcagcaga
     2101 cgctcgcaac gcaactcgcg agtatggcga acgtccagaa cacgcagctt gaagcgttct
     2161 cccggcaact tgtcacgctg acggaaagca acgcgctgca aagccagcac gcacgcgacg
     2221 aacaaagcca ggcgctgaag cgtttcggcg atgcgctcac gctgcagctc gcgcagatgt
     2281 cggagtcgaa tgaccgtcgt ctgagcgagg tgcgcgcaac gctcgaagcg cggctgaagg
     2341 atatcgaagc gaacaacgcg accaagctcg aagaaatgcg ccgtaccgtc gatgaaaagc
     2401 tgcacgccac gctggagcag cggctgggcg aatcgttcag gctggtgtcg gaccggctgg
     2461 aacaggtgca tcgcggactg ggggaaatgc agacgctggc ggcgggtgtc ggcgacttga
     2521 agaaggtgct gaccaacgtc aagacgcgtg ggacgtgggg tgaagtgcag cttgaatcgt
     2581 tgctcgagca gttgttgaca ccggatcagt acgcgaagaa tgtcgcaacc atcccgaaga
     2641 gcaacgatcg cgtggagttc gcgatcaagc tgcccggtcg tcacgacgca cccggccaga
     2701 gcggcgcgaa tgcagtggct acgccggtgt ggctgcctat cgacgccaag tttccgcgcg
     2761 aggactacga acgtctgatc gatgcgcagg atcgcgccga tgtagtcgcg gtcgaggaag
     2821 cgtcacgtgc gctggaaggc cgcattcgtg cggaagcgaa ggctatcgcg cagaagtacg
     2881 tcgcgccgcc gcacactacg gatttcgcgt tgttgttcct gccgactgag gggctgtatg
     2941 cggaaatcct tcgccgtccc gggctgaccg attttctgca gcgggaatac cgggtgagcg
     3001 tgacaggtcc aaccacgttg accgcgctac tgaacagctt gcagatgggt ttcaggacgc
     3061 tggcaatcga gcagcgttcc agtgaagtct ggcaagtgct cggcgcggtg aaaacggagt
     3121 tcaggaagtt tggcgaagtg ctgtcgaaga cgcggtcgca gcttgaagcg gtgacgcggt
     3181 ccattgaatc ggcggaaacg cgtacgcggc agatgagcaa gaaactacga gacgtggaag
     3241 cgttgccggg cgagcaggtg gccaacctgc tcggggatga acgtgaagaa cccgcagaac
     3301 gcgacgagcc cggcgcttag tccgcagcag gcgaagccag cgtagccagt gcgtcgccag
     3361 tgatgcgcac gatgcgccag tcgggcagca cggttgcgcc catcttctcg tagaagccga
     3421 tggcgttctg attccagtcg agcacggtcc attcgaagcg gccgcattga cgttccaccg
     3481 caagcgccgc caaagcgcgc agcatcttcg tgccgagtcc gctgccacga gtggccggct
     3541 tcacgtacag gtcttccagg tacaacccgc gcttgccgag aaaggttgaa tagttctgga
     3601 agaacagcgc gtagcccact atgcgtccgt cctcttcggc caccatggct tcagcgcacg
     3661 gccgcgcacc gaacaacgcg tcgtgcacgc cgccctcggt cgcaatgaac atgtgcatga
     3721 gcttttcaaa ctcggccagc tcgagcatca agctaaagat cgcgccgaca tcggcgggtg
     3781 cggcgggtcg gatttgatcg ctcatcacgc ctcttctggt gcgtcggaca agacgatctc
     3841 aatgccgccg aaccgtgacg ccacccagtt gtatgcgtgg cacgcaatcc acagcaagat
     3901 gaagccgagg atggcattga gcagcagcgc gcttgtcacg gtgctcagct cgaccgagcc
     3961 gtatcggaag aacgcaacca gcacgccgag caacacaatg ggtacgctga aggtcaggta
     4021 cacgagaatc agcgctttgg ccgtttgtcc gggcgcgatg aacgaaatct gttttttcat
     4081 gaaggaaaag ccccgtcagt caaagtgcaa tgcattcgaa ccatccgttt tagccgctta
     4141 aggtcatgac ggcgcgacgg tccaggttct tgaggttcag gttattgaag caggttgtcg
     4201 aagcgccttt gaagctagat caggccatcg aatggcagga tatccacgct gtctcctgca
     4261 tcgatatttc ctgcgtcgtg cttcaggaca atgaagcaat tggcttcgct cattgaactc
     4321 agcacgcccg aaccttgcgg cccggttgtt accacatgcc agtgcccggc ggtgtcccgg
     4381 cgtgcaatac cgcgttgaaa ctccgaccgc ccggcgcgtt tgttgatcgg ttgcgaactc
     4441 gtcgccgata tcaacggcag cgaatagggt gtcgcgcccg acatggcgag cagcgcctcg
     4501 cgcacgatga aataaaacgt cgccatcacc gcaaccggat ttccgggcaa gccaaagaac
     4561 aaggccgatt cgccttcacc cggacgcttg cccgaccaca ggcggccgaa cgcgagcggg
     4621 cggccgggtc gcatcgcgat cttccagaac gccacgtcgc cgagcgcgtt catcaggtca
     4681 cgcgtgaagt cggcatcgcc tacagacacg ccgcccgaac tgatcactac gtcggcgtcc
     4741 tgcgtagcct gtcgcaacgc ccgttcaagt gatgcacgat cgtcacgcac aatccccaga
     4801 tccaccggtt ccacgttcat ccggcgcagc atcgcgaaga gggtatagcg gttgctgtcg
     4861 tagacgcaac ccggcgccag cgcatcgcca acggaacgca attcgtcgcc ggttgaaaaa
     4921 aacgcgacac gcacgcgccg ttgtaccgct acctcgccaa tacccagcga cgcaagcaaa
     4981 ccaagatccg acgcacggac aatccggccc ttgcgcaacg ccggctggcc ttgcgcgagg
     5041 tcttcccccg cgagccgccg attcgcgccg cgcacgatac gcgccgaggc gaacgtgatg
     5101 gcgtcgccgt tgcgctgtac gagctcttgc ggcacgacgg tgtcgcagcc gggcgggatg
     5161 agcgcaccgg tcatgatgcg cacgcattgc gcggctagcg gacgtccttc gaacggctgt
     5221 ccggcgagcg cggtacccgc gaccgtcaag cgaagcgatt catcgtccgg cgggcttgct
     5281 tcatccgatc cattcgcttc atccggcaac gtcgagccat cgaacgcata accgtccatg
     5341 gccgagttgt cgtgcaaagg aacattgatc ggcgagatga catcctctgc cagcacgcga
     5401 tcgagtgcgt cgaagaggcg cacgcgttcc acctcggtgc gaccgcgcgg caacgcccac
     5461 tggcgcacga tctcctgcgc cgcgctgacg gcagcgcgtt cggatcgtac tcggcgacgc
     5521 agctcgaaaa gtgcctgggt gtgttcatcg atgggtgtat cggagcggaa gtcgcgatgc
     5581 aaagctcgcg ggcggcccgg tgaaaaaggc tggcatgtcg tggatgctgg cgcagccgct
     5641 gccccagtcg ctgtgaagcg gggcgctgac caagccgggg cctcgccaca aacctgagca
     5701 aggaacgaaa cgaaccgatg ctagttgcga ttgagatcgg ctagctgctg caaatcgttg
     5761 acattgtaaa acgcacgctc gttgtcgaag gtcacttcga ccgtcttgtg gcgcgcgtac
     5821 cacgcgcgga ccttgcgctc gccggcaagg acgaacgcgt cgagatcctc caccagcgac
     5881 gcgcgcagca acgcgaaaac cgggtgcgcg tggcgttcgc ccgcggcatc gacaactacc
     5941 gccaccgcga tatccgcttg tccggcgctc aagccttcga atagccgttc ggccagatga
     6001 gcatcgacga aaggcgcgtc gcagggcacg aacagcacaa attccgtttg cgctgcatgc
     6061 aacgccgccg atatcccggc aagcgggcct gggaaatcgg gaaacgcatc gacaatcacc
     6121 tttgcctgaa acggcatgcc aagctgcgcg tagatctcga ggctgcgatt cgcgctgatc
     6181 agcatcgcgc cgcattgcgg cttgagcgct cgcagtgcat ggagcgcaag cggttcgagg
     6241 tcgagcggtt gcaggccttt atcgataccg cccatgcgtg atccgagtcc gcccgccagc
     6301 accacgccgg tgatgtcgcg cttctggaca ggactgccgg tcgggcctgc catatcgaca
     6361 tcggccaagt caaccatgtc agccgccgat gtaagacatt tcgacgcgcg gcgcgtccgg
     6421 gtcggcggcg ggcaacgcgt tgctgccgcg aagttccgag tagcggtcgg tgcgtgcttc
     6481 ccagatccgg gcgatggctg tcgcgaccgt agcgtcgctc gcgccgctgc ggatcagcgc
     6541 gcgcaa
//
LOCUS       DATGBK010001541         1577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_64670, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001541 DATGBK010000000
VERSION     DATGBK010001541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64670"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1053
                     /locus_tag="VKJ77_21510"
     CDS             <1..1053
                     /locus_tag="VKJ77_21510"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC47908.1"
                     /translation="SSLDEREVELLFSVVRRLRDDGRAVIFVSHRLDELYALCDRVTV
                     MRDGQTVAESPMAALDKLQLVTTMLGRTLAAVVHEDSAVKEANLAKRGATAISATNLG
                     AGAKVSDVSLDVHSGEAVGLAGLLGSGRTETMRLMFGADPTERGSLSIDGKPVTLKSP
                     QDAIARGIAYLTEDRKGEGIVPELSVRDNLTLVCLRTLTKRGVVDVAKQREIVDRFIE
                     SLGIKLRSADQPIRELSGGNQQKVLLARWLATNPGLLLLDEPTRGIDVGAKADVAKII
                     RELRDSGLAVLLSASELEELTAVADRAVVIRDGKTVAELDGARMSEASIMDAIAYGSG
                     EESALAEAVDAKEGQP"
     gene            1050..>1577
                     /locus_tag="VKJ77_21515"
     CDS             1050..>1577
                     /locus_tag="VKJ77_21515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47909.1"
                     /translation="MNQKTQPATAAPLVQAAQKKKHRITIQREIAVLLAMIVFNLLFT
                     QHFWSLQTFNVNLTQVVTIVIVGIGMTLVVATGGIDLSVGASMAIAGSLAPMIFMNVA
                     GPFGIALAFVLPVMAAALCGVFNGFLVTRLSVQPIVATLVLFIAGRGIAQVFTDGSLQ
                     AFDNPAFQWIALGRVA"
BASE COUNT          288 a          460 c          520 g          309 t
ORIGIN      
        1 tcctcgctcg atgaacgcga agtcgagttg ctgtttagcg tggtgcggcg tttgagggac
       61 gacggccgcg cggtgatttt cgtgtcgcat cggctggatg agttgtacgc gctgtgcgat
      121 cgcgtcacgg tcatgcgcga cgggcagacc gttgcggaaa gcccgatggc cgcgctcgac
      181 aagctgcagc ttgtcaccac catgcttggg cgcacgcttg cggccgtggt gcatgaggac
      241 agcgcggtca aggaagcgaa cctagccaaa cgcggcgcga cggcgatcag cgcgacgaac
      301 ctcggcgcgg gcgcgaaggt gtcggatgta tcgctcgatg tccactcagg cgaggccgtc
      361 ggtctcgccg ggctgcttgg ctcgggccgc acggaaacca tgcggctgat gttcggcgcg
      421 gatccgaccg agcgcgggtc gctttccatc gacggcaagc cggtcacgct caagtcgccg
      481 caagacgcca tcgcgcgcgg gatcgcgtat ctcaccgagg accgcaaagg cgaaggcatc
      541 gtgccggagc tgtcggtgcg cgataacctc acgctcgtct gcctgcggac gctgaccaaa
      601 cgcggcgtag ttgatgtcgc gaagcagcgc gagattgtgg accggtttat cgaatcgctg
      661 gggatcaaac tgcggtcggc cgatcaaccg atccgtgagt tatcgggcgg caatcagcag
      721 aaggttttgc tcgcacgctg gttggcgacg aatcctggct tgttgctact cgatgaaccc
      781 acaagaggga tcgatgtcgg cgcgaaagcc gatgtcgcca agatcatccg cgaactgcgc
      841 gactcggggt tggcggtgtt gttatcggcg tccgaactcg aagagcttac tgccgtggcc
      901 gatcgcgccg tcgtgatccg cgatggcaag accgtcgccg agctcgatgg tgcgcgcatg
      961 agcgaagcgt cgatcatgga tgcgatcgcg tatggatcgg gagaagaatc ggcgctcgcg
     1021 gaagcggtcg atgccaaaga aggtcagcca tgaatcagaa aacccagccg gcaaccgctg
     1081 cgccgcttgt gcaggccgcg cagaagaaaa aacatcgaat cacgattcag cgcgagatcg
     1141 ccgtgctgct cgcgatgatc gtgttcaacc tgctcttcac ccaacacttc tggtcactgc
     1201 aaaccttcaa cgtcaacctg acgcaagtgg tgacgatcgt gatcgttggc attggaatga
     1261 cgctggtcgt ggcaaccggc ggtatcgatt tatcggtggg cgcttcgatg gcgattgccg
     1321 gttcgctcgc gccgatgatc ttcatgaacg tggccggccc gttcggcatt gcattagcct
     1381 ttgtcttgcc cgtcatggct gccgccctct gcggcgtgtt caacggcttc ctcgtcacaa
     1441 ggctctctgt gcagccgatt gtcgcgacgc tggtgctgtt catcgcagga cgcggcattg
     1501 cgcaggtgtt caccgacggc agcttgcaag ccttcgataa ccccgcgttc cagtggatcg
     1561 cgctgggtcg cgtagcg
//
LOCUS       DATGBK010001542         6932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_295814, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001542 DATGBK010000000
VERSION     DATGBK010001542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6932
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295814"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VKJ77_21520"
     CDS             <1..292
                     /locus_tag="VKJ77_21520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007735946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RraA family protein"
                     /protein_id="HMC47910.1"
                     /translation="AMGMPVFARGTSLLTTKRLGAPGNVLNEPVTCGGVTVNPGDIVV
                     ADDNGVLFMSDATAAAVIDQALASDRAEPAVLARLHAGEAARNVLLLHHSPD"
     gene            389..1162
                     /locus_tag="VKJ77_21525"
     CDS             389..1162
                     /locus_tag="VKJ77_21525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007731924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HMC47911.1"
                     /translation="MHAIHDSYASSHEWQVRTELAALYRLAAHFRMTDMIDTHITARL
                     PGDTPTFLINRYGVLFHEMRASDLVKIDHRGHVIDARAADDPARFHVNAAGFTIHSAI
                     HMARHDLAFVIHTHTAAGTAVSAQEHGLLPISQHALKFYGKLGYHDYEGIALDLGERE
                     RLIRDLGPHKAMILRNHGLLAAGSTVAEAFHEIYFLERACQAQVQALAGGSALRIPPA
                     TVCELTASQFNRQESAEIMGMAWRAALRLIEDPNSDYRS"
     gene            1159..2085
                     /locus_tag="VKJ77_21530"
     CDS             1159..2085
                     /locus_tag="VKJ77_21530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018444270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase A"
                     /protein_id="HMC47912.1"
                     /translation="MTRLVLISRDYDMSHLAPLIRQAAPELDVMMHGNHDALEAEVAV
                     CWNPPQGAVAALPRLRLVHSIAAGVDNILTDPSLPRVPLCRVVDPQHARGMSEFVTWG
                     VLHFHRQLDRVMANQRNKVWLRHDQRAPSTCTVGVMGLGEIGTRVSVDLHRIGFGVRG
                     WAKRPKDLPGIHTFSGADSLPSFLQGTDILVCLLPLTDETRGILNARTFGLLKPGSKL
                     IHVGRGEHLVPGDLLGALQREQIGGAIVDVFPNEPLPASDPFWNAPNLIVTPHMASVA
                     SPETIGLQVAMNVRRMVNGEPLHNQVDVARGY"
     gene            complement(2104..3063)
                     /locus_tag="VKJ77_21535"
     CDS             complement(2104..3063)
                     /locus_tag="VKJ77_21535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007735954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47913.1"
                     /translation="MSKDRPDTYLNDRLDWNLLRTFLAIAREGSVSRAATRLHLTQPA
                     VSQALKRLEDALGMRLVDRHGPRIEVTQAGIEVQQIAEDVYGMMSRLSLAKSDGDHDI
                     SGMVRLSTVSGIDFPAYDAFLAGFHRSYPRIELESQEMRSADVVNSLQQKTATLGLSP
                     RRTLPKKVESRLFLRQRYALFCGRHHPLFGREGLCTADLVSEKFVSFTGDKVGDHMSP
                     LTFFRDEKGFTERVIGSSSSMSEVKRFIFAGFGIGCLPEHVVREDVALGRFQRLPPDE
                     GVADLDIHLLWSADRKFSAAETAFLDALNGFIDTQEALAEPPQ"
     gene            3160..4431
                     /locus_tag="VKJ77_21540"
     CDS             3160..4431
                     /locus_tag="VKJ77_21540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HMC47914.1"
                     /translation="MATSLRGERASMLKINGERLWSSLMEMAKIGGTAAGGVRRLALT
                     EEDAAGRALFARWCIEAGLTLTVDEVGNLFARRAGRDASASPVASGSHLDTQPEGGRF
                     DGVYGVLAALEVVRTLNDADIDTDKPIEIVVWTNEEGARFTPAMLGSAAFTGAMPREQ
                     ALAAQDSSGCSVRDALQAISYAGTRPVPGIVFDAYFEAHIEQGPVLEENGVPIGIVTG
                     GQAIRWLDVRVRGQAAHAGTTPMPFRRDALFGSAEMASALEGISAEFAPQGLVTIGEI
                     SIRNASRNTIAADLSFTVDLRHPEDSRIDAMETLLREKFEAVAARRGLTVEISRHWVS
                     PATPFDTDCVAAVTHAVEKLDYPHQRIVSGAGHDAIHLARHCPSAMIFIPCVNGLSHN
                     EAEDALPQDVTRGADVLLHAILARAGQKCSA"
     gene            4454..5239
                     /locus_tag="VKJ77_21545"
     CDS             4454..5239
                     /locus_tag="VKJ77_21545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC47915.1"
                     /translation="MKAVRPLQSRFAAFAVFLSVTGLFSSAHADTLDNITQTKVVKIG
                     VFQDYPPFGSIGADMKPRGLDVDLATVLAQQLGARVELVPVTGTNRLAYLADHKVDLL
                     MSAGQTPARDKVLDFTRAYAPYYIAVFGPKTLVVKQAADLGGKSVATAGGTNEDISLS
                     KVAPDTATIKRFDDQSGAISAFLSGQTQLISLGGDVATRVHAMHPQTSMDEKLRLLDS
                     PMHIAVNKGEGPLRDRLNTALDEAQKDGSIDQIEKKWLGAPSL"
     gene            5259..6143
                     /locus_tag="VKJ77_21550"
     CDS             5259..6143
                     /locus_tag="VKJ77_21550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005014019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HMC47916.1"
                     /translation="MKLIDAVRPPSLRRAWLFVPGNDMSRHAIAMKSGADAIVADLEE
                     MTAPEDRVQARQRIVAMLRETAALGLIGAVRINKLEHDGHADLQGIMAGAPRAVFLPH
                     SESATQMIALDAALSALETAHGISPGSTEIVPTIESAKGLVALAGILSATSRIRCCML
                     AVEDLAANLGAKRTPGATELLYARSRFLIECIAAECVAIDLPCTYRSEDVLTADLDLS
                     TQLGFTSKCVVFAEHVPAVNNALTPSPEAISEAVERVAAYAIQDMGMMNGKHWIDAPE
                     RNNAARLIARHKALAAYG"
     gene            complement(6358..>6932)
                     /locus_tag="VKJ77_21555"
     CDS             complement(6358..>6932)
                     /locus_tag="VKJ77_21555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HMC47917.1"
                     /translation="EQFDLFFLEDAIALEEGEWIRQLRSKTTTPLAQGELFNNPSEWR
                     FLITERLIDYIRVHLSQIGGITAARKLQIFAEQFGVRTAWHGPGDMSPLAHAANIHID
                     LASRNFGVQEWSGTEPPNFVIQELKGPRAALLDVFPGLPEFRNGHVYANDKPGLGVDI
                     DEVEAAKYPCENTVTTWTQTRLKDGALQTP"
BASE COUNT         1358 a         2181 c         2105 g         1288 t
ORIGIN      
        1 cgcgatgggc atgcccgttt ttgctcgcgg caccagtctg ctgaccacta aacgcctggg
       61 cgcacccggc aacgtgttga acgagccggt aacgtgcggc ggcgtaacgg taaatcccgg
      121 cgatatcgtc gttgccgacg acaacggcgt cctcttcatg agtgacgcca ctgccgctgc
      181 cgtcatcgat caagccctcg cgtcggaccg cgcggaacct gctgtcctcg cccggctgca
      241 cgcaggcgaa gcggcgcgca acgtcctgct acttcaccat tcgcctgatt gatgatcaaa
      301 atcagcacgc gtaatttgac gccgccgcgc gaaatcacga acactgacgt gatgacacat
      361 cgcccttcca gaacctgaga gcccgagcat gcatgcaatc cacgattcat acgcgtccag
      421 ccacgaatgg caggtccgca ccgagctggc cgccctgtac cggctcgccg cgcatttccg
      481 tatgacggac atgatcgaca cgcacatcac cgcccgcctc cccggcgata ctccgacgtt
      541 cctgatcaac cgctacggcg tcctgttcca cgaaatgcgc gcgtccgacc tggtgaaaat
      601 cgaccatcgg ggccacgtga tcgacgcgcg tgccgccgat gaccccgcgc gctttcacgt
      661 gaacgccgcc ggcttcacga tccattccgc gatccacatg gcgcgccacg acctggcgtt
      721 cgtgatccat acacacacgg cggcggggac ggcggtatcg gcacaagagc atggcctgtt
      781 gccgatcagc cagcacgcgc tgaagttcta cgggaagctg ggttaccacg actacgaggg
      841 catcgcgctt gatctcggcg agcgcgagcg cctgatccgt gatctcggcc cgcacaaggc
      901 gatgatcctg cgcaaccatg gcctcctcgc cgcgggcagc acggtggccg aagccttcca
      961 cgaaatctac tttctcgaac gcgcctgtca ggcgcaggtc caggcgctcg ccggcggctc
     1021 ggcgctgcgc attccgcccg caactgtgtg cgagctgacc gcgagccagt tcaaccgcca
     1081 ggaatcagcg gagatcatgg gcatggcatg gcgtgccgcg ttgcgcctga tcgaggaccc
     1141 gaactcggac tatcgctcat gacccggctt gtcctcatca gccgcgacta cgacatgtcg
     1201 catctcgcgc cgctgatccg ccaggctgcg cccgaactcg atgtcatgat gcacggcaac
     1261 cacgacgcgc tcgaggccga agtggccgtc tgctggaacc cgccccaggg tgcggtagcg
     1321 gccttgcccc ggttgcggct ggtgcacagc atcgctgcgg gcgtcgacaa tatcctgacc
     1381 gacccgagcc tgccgcgcgt gccgctgtgt cgcgtggtcg atccgcagca tgcgcgcggc
     1441 atgagcgaat tcgtcacgtg gggcgtgctg cattttcatc ggcaactgga tcgggtcatg
     1501 gcaaatcagc gcaataaagt atggctgcgt cacgaccagc gcgcaccttc aacatgcacc
     1561 gtcggtgtaa tgggacttgg tgaaatcggc acgcgggtca gtgtcgacct gcaccggatc
     1621 ggctttggcg tgcgaggctg ggcgaagcgg ccaaaagatc tgccgggcat acataccttt
     1681 agcggcgcgg acagtcttcc gtcattcctg caaggcaccg atattctcgt gtgcctgctg
     1741 ccactcaccg atgaaacccg cggcattctc aacgcccgca ctttcggcct gttgaaaccg
     1801 ggttcgaaac tgatccatgt cggacggggt gagcatctcg tgccgggcga cctgctcggt
     1861 gcgttgcagc gcgagcagat aggcggcgca atagtggatg tcttcccgaa cgaaccgctc
     1921 ccggcgagcg acccgttctg gaatgcgccg aacctgatcg tcacgccgca catggcatcg
     1981 gtggcaagcc ctgagaccat cggcttgcag gtcgcgatga acgtgcgccg gatggtcaac
     2041 ggcgaaccat tgcacaacca ggtcgacgta gcgcgcggtt attgaggttg tgaggttatg
     2101 aggttattga ggaggctcgg cgagcgcttc ctgcgtatcg ataaacccat tcagcgcgtc
     2161 gagaaacgcg gtctcggccg cgctgaactt gcggtcggcc gaccacagga ggtggatgtc
     2221 gagatcggcg acgccttcgt caggcggcag gcgctggaag cgcccgagcg ccacatcttc
     2281 gcgcaccaca tgttcaggca agcagccaat gccgaagccg gcaaagataa agcgcttcac
     2341 ctccgacatg ctcgacgatg atccgatcac gcgctcggtg aagccctttt catcgcggaa
     2401 gaaggtcagc ggggacatgt gatcgccgac tttatcgccg gtgaaagaca cgaatttctc
     2461 gctgacgaga tccgccgtgc acaagccttc tcgcccgaac agaggatgat gccggccgca
     2521 aaaaagcgcg tagcgctggc gcaggaacag cctgctttcc acttttttgg gcaatgtgcg
     2581 gcgcggcgag agaccgagcg tggcggtctt ttgctgaaga ctattcacga catcggcgct
     2641 gcgcatttcc tggctttcga gttcgatgcg cggatagcta cgatgaaacc ccgcgagaaa
     2701 cgcgtcgtac gccgggaagt cgataccgct cacggtcgaa agccgcacca tgccggaaat
     2761 atcgtgatcg ccgtcggatt tggcgagtga cagtcgcgac atcatgccgt acacgtcctc
     2821 ggcgatctgc tgcacttcga tacccgcctg cgtcacttca atacgcggcc cgtgccggtc
     2881 gaccaggcgc atgcccagtg cgtcttccag ccgcttgagc gcctgactga cggccggctg
     2941 cgtgaggtgc aggcgcgtcg ccgcacggct cacgctgcct tccctcgcaa tggcgaggaa
     3001 cgtacgcaac aggttccagt cgagccggtc gttcaagtac gtgtcgggcc tgtccttgct
     3061 catgtcgcgc ctcggcgaag tgtcatcatc catgaaaatt atactgaaca taaggattag
     3121 agattggacg aatgattttg gattcccgat aaaggaggca tggctacatc actacgcggg
     3181 gagcgcgcat caatgttgaa gatcaatggc gaacgactct ggtcgagcct gatggagatg
     3241 gcaaaaatcg gcggcacggc agcgggcggc gtgcgccggc ttgcactcac cgaagaagat
     3301 gcggcggggc gtgcgctgtt cgcgcgttgg tgcatcgagg cgggcctgac actcaccgtc
     3361 gatgaagtcg gcaacctgtt tgcgcgacgc gcggggcgcg atgcatctgc gagtccggtg
     3421 gcgagcggca gccatctcga cacgcaaccc gagggcggcc gcttcgatgg cgtctacggc
     3481 gtgctggccg cgctggaggt cgtgcgaacg ctgaacgacg cagacatcga cactgacaag
     3541 ccgatcgaga tcgtggtctg gaccaatgag gaaggcgcgc gcttcacgcc cgccatgctg
     3601 gggtccgccg cattcaccgg cgcgatgcca cgcgagcagg cgctcgcggc acaagactcg
     3661 tcgggctgct cggtgcgcga cgcgctccag gccatttcgt acgcgggcac gcggcccgtg
     3721 cccggcattg tcttcgatgc gtatttcgag gcgcacatag aacagggtcc ggtgctcgag
     3781 gaaaacggtg tgcccattgg catcgtgacg ggcggccagg cgattcgctg gctcgacgtg
     3841 cgcgtgcgcg gacaggcggc gcatgccggt acgacgccca tgccgtttcg ccgcgacgcg
     3901 ctgttcggca gcgcggaaat ggcgagcgcg ctggaaggca tttcggcgga atttgcgccg
     3961 caaggcctgg tgacgatcgg cgagatatca attcgcaatg cgtcgcgcaa caccatcgct
     4021 gccgatctgt cgttcacggt cgacctgcgt catcccgaag actcccgtat tgacgcgatg
     4081 gaaaccctgc tgcgcgagaa gttcgaggct gtcgccgcgc gccggggcct gacggttgag
     4141 atctcgcgtc actgggtcag ccccgccacg cctttcgata ccgattgcgt cgccgccgtg
     4201 acgcacgctg tagaaaagct cgactatccg catcagcgca ttgtcagcgg cgcaggtcac
     4261 gacgcgattc atctcgcacg ccattgcccg agcgcgatga tcttcattcc ctgcgtgaac
     4321 ggcctgagtc acaacgaagc cgaggacgcg ttaccgcaag acgtgacccg cggcgccgat
     4381 gtgttgttac acgcaatact cgcgcgcgcc ggtcaaaaat gttctgcctg aaacactctc
     4441 taaggatcgc gccatgaaag ccgttcgacc gttgcagtcc cgcttcgccg cattcgcggt
     4501 gttcctctcc gtcaccggcc tgttttcatc ggcccatgcc gatacgctcg ataacattac
     4561 gcagaccaaa gtggtcaaga tcggcgtatt ccaggactac ccgccgttcg gatcgattgg
     4621 cgccgacatg aagccgcggg gactcgatgt cgatctcgcc accgtcctcg ctcagcagct
     4681 cggcgcacgc gtggaactcg ttccggtgac cggcacgaac cggctcgcct atctcgcgga
     4741 tcacaaggtc gacttgctga tgtcggcggg ccagacaccc gcgcgcgaca aggtgcttga
     4801 tttcacccgg gcctatgcgc cctactacat cgcggtattc ggcccgaaga cgctcgtggt
     4861 taaacaagca gccgacctgg gcggcaagtc ggtggcgacc gcgggcggca cgaacgagga
     4921 catcagcctg agcaaggtcg cgccggacac ggccaccatc aagcgcttcg atgaccagag
     4981 cggcgcaatc tccgctttcc tcagcggcca gacacagctg atttccctgg gcggggatgt
     5041 cgcaacccgc gtgcacgcca tgcatcccca gacgtcgatg gatgaaaagc tgcgtctgct
     5101 cgattcgccg atgcacattg cggtgaacaa gggcgaaggg ccactgcggg accgcctgaa
     5161 taccgcgctt gatgaagcgc agaaggacgg cagtatcgac cagatcgaaa agaaatggct
     5221 gggcgcgcct tcgctctagt tacttaaagg atctcgtcat gaaattgatc gatgcagttc
     5281 ggccaccatc actcagacgc gcgtggctgt tcgttcccgg caacgatatg agccgccacg
     5341 cgatcgcgat gaagagcggc gccgatgcga tcgttgccga tctagaggaa atgaccgcgc
     5401 ccgaggaccg cgtgcaagcg cgccagcgga tcgtcgcaat gctgcgcgaa actgcagccc
     5461 tcgggctgat cggcgcggtg cgcatcaaca agctggaaca cgacggccac gccgatctgc
     5521 aaggcatcat ggccggcgcg cctcgcgcag tctttctgcc gcatagcgag agcgccacgc
     5581 agatgatcgc gctcgatgcc gccctgtctg cactcgagac tgcgcatggc atttcgccag
     5641 gatcaaccga aatcgttccg accatcgaat cggcgaaggg tcttgtcgca ctggccggca
     5701 tcttgtccgc aacgtcgcgt atccgatgct gcatgctcgc ggtcgaagac ctggccgcga
     5761 acctcggtgc gaaacgcacg ccgggtgcga cggaacttct ttatgcccgc agccggtttt
     5821 tgatcgagtg cattgccgca gagtgcgtgg ctatcgactt gccttgtact tatcggtcgg
     5881 aggacgtgtt gacggccgac ctcgacttat cgactcaact gggatttaca tcgaaatgcg
     5941 tggtgtttgc agagcatgtg cctgcggtca ataacgcgtt gacgccatct cctgaagcga
     6001 tctcagaggc tgtggaacgg gtggcagctt atgccattca ggacatgggg atgatgaacg
     6061 gcaagcactg gattgatgct cccgagcgca acaacgccgc caggctaatc gcgcgtcaca
     6121 aagcactcgc agcgtatgga taaaattatt ccgagttagt ccggaccgtc ctgcactccc
     6181 ggctcgattg gtcaggctcg accacagaca atccacgaca ctgttagtgg tcgagactca
     6241 aaaaaactaa caacccgagc gtacacgcac tctctttttc ctgtgctgtg tgacaccgca
     6301 cgcgaacagg agcacgggta gtctccaagg aggctgactg aaactcgctt tgctctccta
     6361 cggagtctgc agggctccat ccttcagccg ggtctgcgtc cacgtcgtca ccgtgttctc
     6421 acacggatat ttcgctgcct cgacctcgtc gatgtcgacg ccaagacccg gcttgtcgtt
     6481 ggcatagacg tgtccgttcc tgaattccgg aaggccgggg aacacgtcga gcaatgccgc
     6541 cctcgggcct ttaagctcct ggatcacgaa gttgggcggc tcggtgcccg accactcctg
     6601 cacgccgaag ttgcgtgagg caagatcaat gtggatgttc gccgcatgcg ccaacggcga
     6661 catgtcaccc ggaccgtgcc atgccgtcct tacgccgaat tgctcggcaa agatctgcag
     6721 cttgcgcgcg gccgtgatgc cgccgatctg actaaggtga acccggatgt agtcgatcaa
     6781 tcgctcggtg atcagaaatc gccactcgga aggattgttg aagagctcac cctgggccaa
     6841 aggcgtcgtg gttttcgagc gcaactgacg aatccattcg ccttcttcca aagcgatcgc
     6901 atcttcgaga aagaacaggt cgaactgttc ca
//
LOCUS       DATGBK010001543         3995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_318894, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001543 DATGBK010000000
VERSION     DATGBK010001543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3995
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318894"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1062)
                     /locus_tag="VKJ77_21560"
     CDS             complement(<1..1062)
                     /locus_tag="VKJ77_21560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretin N-terminal domain-containing protein"
                     /protein_id="HMC47918.1"
                     /translation="MALRRVATALLVAGLFTTQIAHAQVTLNFVNADIDQVAKAIGAA
                     TGKTIIVDPRVKGQLNLVSENPVPEDQALKTLQSALRMQGFALVQDHGVLKVVPEADA
                     KLQGVPTYVGNAPTARGDQVITQVFELHNESANNVLPVLRPLISPNNTIAAYPANNTL
                     VVTDYADNVRRIASIIAGIDTAAGRQVDVVPLKNANALDVAEQLNKLLDPGSIGSTDA
                     TLKVTVTADPRTNSLMLRASSGARLAAAKQLAHKLDAATTQPGNMHVVSLRNADATRL
                     AKTLRAMMGKGGSDSSSSSSGSGSSSGSGSFGQGGSGSSTGTSGLPPLPGGSGSSSSG
                     SNPMGGGGQSKDSGFSNNND"
     gene            1727..2167
                     /locus_tag="VKJ77_21565"
     CDS             1727..2167
                     /locus_tag="VKJ77_21565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HMC47919.1"
                     /translation="MFLRLFAIGFGASLAAAPAHADCFDEAAKYQKVNPLILRAIAWQ
                     ESHNQPDAMNKNANGSIDYGLMQINSVHLTQLAQYGISTTTLMQPCKSVYIAAWHLRQ
                     KMNKYGNTWQAVGAYHSETPSLRDQYSRQIINILGKWKLLTASR"
     gene            2367..3536
                     /locus_tag="VKJ77_21570"
     CDS             2367..3536
                     /locus_tag="VKJ77_21570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HMC47920.1"
                     /translation="MNQPLPVTVLAGLPGVGKTTLLDHLLAHHAGTSIAVVRGRIDDL
                     SSEISSAAAAGRFDAIVVEASGTDDPQVIAESLVFDNDIAHLDTIVTVVDAESFSREY
                     ASTDSLSERGMTSQDHDAHDDRTVVEALIAQIEFCDVIVINKTDLIDTAALARLRSIL
                     HALNPRAELIDAHQGAVAANELVNTDRFDFDATSSAPGWLAMLNADPDSAAELAADDL
                     GVGGFVYRARRPFHPERLWALVHQEWPGVLRCKGFFWLATRSDIGGSLSQAGGALRHG
                     PAGMWWAAQERSEWPTGDAELEAEIAADWYGDADDMTIGDRRQELAMIGTSLDESHWR
                     AAFDACLVNDEEWSQASKGLLADPFPSWEMDEDDHDHDHDHHDHGDDCDCGAHGH"
     gene            complement(3626..3904)
                     /locus_tag="VKJ77_21575"
     CDS             complement(3626..3904)
                     /locus_tag="VKJ77_21575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HMC47921.1"
                     /translation="MNKQELIDAVAAQTGASKAQTGETLDTLLEVVKKAVSKGDAVQL
                     IGFGSFGSGKRAARTGRNPKTGESIKIPAAKTVKFTAGKAFKDAVNKR"
BASE COUNT          784 a         1164 c         1182 g          865 t
ORIGIN      
        1 gtcgttgttg ttgctgaaac cggagtcctt gctctggcca ccgccgccca tcggattact
       61 gcccgacgac gaactgccgc tgccgcccgg cagcggcggc aaaccgctgg tgccggtgga
      121 cgaaccggaa ccgccctggc caaacgagcc cgaaccgctc gatgaccccg atcctgacga
      181 tgatgacgaa ctgtcgctgc cccccttgcc catcatcgcg cgcagggttt tggcgaggcg
      241 cgtggcatcg gcgttgcgca gcgagaccac gtgcatgttg ccaggctgag tggtggccgc
      301 gtcgagcttg tgcgcaagct gcttggccgc tgcgagccgt gcgccgctgg acgcgcgcag
      361 catcagtgag ttcgtgcgcg gatcagcggt gacggtaact ttcagcgtgg cgtcggtgct
      421 gcctatcgaa cccggatcga gcagcttgtt cagctgttcg gcaacgtcga gcgcattcgc
      481 gttcttcagc ggcaccacgt cgacctgccg gcccgccgct gtgtcaatgc ccgcgatgat
      541 gctcgcgata cgtcgcacgt tgtcggcata gtcggtgacg accagcgtgt tgttggccgg
      601 gtaggcggcg atcgtgttgt tcggcgagat cagcggacgc aggaccggca acacgttgtt
      661 ggccgattcg ttgtgcagct cgaacacctg agtgatgacc tgatcgcctc tcgcggtggg
      721 cgcattgccg acataggtcg gcacgccctg cagcttggcg tcggcttcgg gcacgacttt
      781 gagcacaccg tgatcttgca cgagtgcgaa gccctgcatt ctcaatgccg actgcagcgt
      841 tttcaaagcc tgatcctctg gcaccggatt ttccgataca agattcaatt gccctttgac
      901 ccgcgggtcg acgatgatcg tcttgcccgt agccgcgccg atcgctttcg cgacctgatc
      961 gatatccgca ttgacgaaat tcagtgttac ctgtgcgtgc gcaatttgcg tggtgaaaag
     1021 accagccacc agcaaagccg tcgcgacacg acgcaatgcc atacgttttc ttctcatgga
     1081 gtgtgatgtc tagacctgct gatcacgtcg ctgcaagcca gttgtgttgc gtctttcgac
     1141 gctattaaca tcacgacggc ttaaaacaga cgtttccaag gccgatgccc gggcaatgcc
     1201 atatcccaaa aacgtgaacc atagcagctt ttcgtgtcag gtttgtcaca aaagtactaa
     1261 tccttggcgg acgatcgtca aatattaaag cgccacaaat ctcaaaaaaa cttctgacaa
     1321 aatcctatgc gccttgaccc ttactcagcc ctttctacat aggaaaaagg tttaaattgt
     1381 catattagtt cgctttcgcc cgtacagtag agcgattcgg gtttcatgcg cctataaaga
     1441 caaacgtggt cgattagctt aactttcgaa cgcctttcag attaattggc gccacacggc
     1501 ttggctatgt cggatggtca aatttaaaat gccatagtct gccggtatga tacgagcgct
     1561 tcggcgcgct ggatgagcaa agtgcgggtg ggttttcccg cgtttacaga gtattaccaa
     1621 gtttttccgg gtgttacccg gttttgccga aaaaatgaag tcttcaccgc agcagtcagt
     1681 ggatgcaggg cgcacagtcg atcaggtggt acccaacatg atgaaaatgt ttttgcggct
     1741 ctttgcgatc ggtttcggcg cctcactggc agccgcgccc gcgcacgccg actgtttcga
     1801 tgaggccgcc aagtatcaaa aggtcaatcc gctgatcctg cgggcgatcg cgtggcaaga
     1861 gtcgcacaac cagccggacg caatgaacaa gaacgcgaac ggttccatcg actacggcct
     1921 gatgcagatc aattcggtgc acctgacgca gctcgcacag tacgggatct cgaccaccac
     1981 gctgatgcag ccgtgcaagt cggtctatat cgccgcgtgg catttgcgcc agaagatgaa
     2041 caagtatggc aacacgtggc aagcggtcgg cgcctaccat tcggaaacgc cgtcgctgcg
     2101 tgatcagtac tcaaggcaga tcatcaatat cctgggcaag tggaagctgt tgacggcatc
     2161 gcgctgatca acccggcttc acttcgcttc gttctgtttc gtcccgcttc ttctgttttt
     2221 catcgcatgg cgcggcgttc cagccgcgtt tgatgcacaa ttccgcgttc cagctcgccg
     2281 ctttccgagg cgggttttct tgaaagcacc accgttttca gtggccgctc gcgcggattt
     2341 cgcgccctct ttcgatgcca aacgcgatga atcagcccct gcccgttacc gtgcttgccg
     2401 gtttgccagg cgtaggcaag accacgctgc tcgaccatct gctcgcgcat catgccggca
     2461 cgtccatcgc ggttgttcgc ggcaggatcg acgatctgtc gagtgaaatc agcagcgctg
     2521 ctgctgcagg tcgcttcgac gcgatcgtgg tggaagcgtc cggtaccgac gacccgcagg
     2581 tgatcgccga aagcttggtc ttcgataacg acatcgcgca cctcgacacg atcgtgaccg
     2641 tcgtcgacgc ggaaagcttt tcgcgcgaat acgcgtcgac ggattcgctg agcgagcgcg
     2701 gtatgacaag ccaggaccac gatgcccacg acgaccgcac ggtcgtggaa gcgctgatcg
     2761 cgcagatcga gttctgcgat gtgatagtga tcaacaagac ggatctcatc gatacagccg
     2821 cgctcgccag gctccgcagc atcctccatg cgctcaatcc ccgcgccgag ctgatcgatg
     2881 cgcatcaagg cgcggtggca gcgaacgagt tggtgaacac ggaccgcttc gactttgacg
     2941 cgacgtcgag cgcgcccggc tggctggcca tgttgaacgc cgatccggat tcggcagcgg
     3001 aattggcggc ggatgacctg ggcgtgggtg gctttgttta tcgcgcgcgc cggccttttc
     3061 atcctgagcg gctgtgggcg ctggtgcatc aggaatggcc gggggtattg cgttgcaaag
     3121 gctttttctg gctggcgaca cgcagcgata ttggcggctc gttatcgcaa gccggtggcg
     3181 cgctgcggca tggtcccgcg ggcatgtggt gggcggctca ggagcgcagc gaatggccga
     3241 cgggcgatgc ggagctggaa gctgaaattg ccgcggactg gtacggcgat gcggacgata
     3301 tgactatcgg cgaccggcgg caggaactgg caatgattgg aaccagcctg gacgagtcgc
     3361 attggcgcgc ggctttcgac gcctgtcttg tcaacgatga ggaatggtcg caagcgtcga
     3421 aaggattgtt ggccgatccg tttccatctt gggagatgga tgaagatgac cacgaccatg
     3481 atcacgatca ccatgaccac ggcgacgatt gcgattgcgg cgcccacgga cattaggtcg
     3541 tcacaggcgc cccaagcgaa caacgccgac gcaccaataa aaaaacccgc cagaggcggg
     3601 ttccatactg acaatcggct acaacttacc gcttgttcac tgcgtccttg aatgccttgc
     3661 cagccgtgaa cttgacggtc ttggcggccg gaatcttaat ggattcgccg gtcttcgggt
     3721 tacggccggt gcgcgctgcg cgcttgcccg aaccgaagct tccgaagcca atcaactgca
     3781 cggcgtcacc cttcgagacg gccttcttga ccacttcgag caacgtgtcc agcgtttcgc
     3841 cggtttgagc cttgctggcg ccggtctgag cggccacggc gtcgatcagt tcctgtttat
     3901 tcattaaggt tcctttatca gtttaggttg acacgaacag cgcgaacgcg ccgattatac
     3961 gtgcgcgggc cttgcagtcg agtactggcg cgggt
//
LOCUS       DATGBK010001544         2292 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_133657, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001544 DATGBK010000000
VERSION     DATGBK010001544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133657"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VKJ77_21580"
     CDS             complement(<1..228)
                     /locus_tag="VKJ77_21580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018443392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47922.1"
                     /translation="MSFSPSSTAAVAEPAGLAPLAAPVDLLLASIETDRPDAFVSLGS
                     AFLTRLPAAPLPAPYLVGISADTAAQLGFNTA"
     gene            393..2051
                     /locus_tag="VKJ77_21585"
     CDS             393..2051
                     /locus_tag="VKJ77_21585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-(methylthio)propionyl-CoA ligase"
                     /protein_id="HMC47923.1"
                     /translation="MTSPLFGQMMDVPLLASSLLSHAARHFGDTEIVSRRIEGDIHRY
                     TWRDCEKRSKQLAQALIGLGVNPGERVGTLAWNGYRHLECYYGVSGMGAVCHTINPRL
                     FPDQVAFIVNHADDEYVAFDMTFATLVDIIAPQCPNVKGWIALGDETCISTHLADMAT
                     PALSYETLIGRFDGDYPWPVLDERSASFLCYTSGTTGNPKGALYTHRSTVLHAFAASL
                     PDAMGCSARDAILPVVPMFHVNAWGIPHAAPLVGAKLVLPGNCLDGKALYELMEAEGV
                     TFSAGVPTVWLGLLNYMKQAGVRFNTLKRTVIGGSACPPAMLRSFEDEYGVEVIHAWG
                     MTEMSPLGTLAKLTWKQQQRSPEERRHLREKQGHVMFGVDMKVVGDDGQELPWDGTSF
                     GDLHVRGPWVIDRYFRKEVSPLIDGWFPTGDVATIDADGFMHITDRSKDVIKSGGEWI
                     SSIDLENVMMSHPQVAEAACIACSHPKWTERPLVVVVLRPGATVTREELLAFYDGKVA
                     KWWKPDDVVFADELPHTATGKLQKLRLRELYREHVLPTVDEKVV"
BASE COUNT          444 a          662 c          716 g          470 t
ORIGIN      
        1 agcggtgttg aaacccagtt gcgcggcggt atcggcggaa atgcctacca gatagggggc
       61 cggcaaaggg gcggcgggca gccgggtcag gaaggcggat ccgagtgaaa cgaacgcatc
      121 gggccggtca gtttcgatcg atgcgagcag caaatccacg ggcgcagcca ggggcgcaag
      181 gcctgccggt tcggcaactg cagcggtgct gcttggggaa aacgacatat tgagcacctc
      241 aggattaacc gatattgtaa atccgccccc gcgccgctgc acgagcccgc gcgatcggct
      301 cccacattgg ctcaaggatc gattaaggta tccattccag tagtagatca ggcatcaaac
      361 cccgtgcatc cggacttgtg aggaactcgc ccatgacgtc gccgcttttc ggccagatga
      421 tggatgtacc gctgctcgct tcatcgttgt tatcccacgc tgcacgccat ttcggcgata
      481 ccgagattgt ctcgcgccgc attgaaggcg acattcatcg ctatacctgg cgcgattgcg
      541 aaaagcgctc gaaacaactg gcgcaggcgt tgatcgggct gggtgtgaat cccggtgaac
      601 gcgttggcac attggcgtgg aacgggtatc gccatctgga atgttattac ggcgtgagcg
      661 gcatgggcgc cgtctgccac acgatcaatc cgcggctctt tcccgatcag gttgcgttca
      721 tcgtcaatca cgcggacgac gaatacgtcg cgttcgacat gacgttcgcc acgctcgtcg
      781 atatcattgc gccgcagtgt ccgaacgtga agggctggat tgcgctcggc gacgagacgt
      841 gcatcagcac ccatctcgcc gatatggcca cgcccgcgct cagctacgaa acgctgatcg
      901 gcagattcga cggcgactac ccgtggccgg ttcttgacga acgctcggca tcgtttcttt
      961 gctacacatc cgggacgacc ggcaatccga agggcgcgct ctacacgcat cgatcgaccg
     1021 tgttgcatgc gtttgcggcg tcgctgcccg atgccatggg ctgttccgcc cgggatgcga
     1081 tcctgcccgt cgtgcccatg ttccacgtca acgcgtgggg tattccgcac gccgcgccgc
     1141 tggtcggcgc gaagctcgtg ctgcccggca attgtctcga tggcaaagcg ctctacgaac
     1201 tcatggaagc cgaaggcgtg acgttttcgg caggcgtgcc aacagtttgg ctcggtttgc
     1261 tgaactacat gaaacaggcg ggcgtgcgct tcaatacgct caaacgcacc gtgattggcg
     1321 gctcggcctg tccgccggcc atgttgcgca gcttcgagga cgaatacggc gtagaggtga
     1381 ttcacgcgtg gggcatgaca gagatgtcgc cactcggcac gctcgccaag ctcacctgga
     1441 agcagcagca acgctcgccg gaagagcggc ggcatctgcg tgaaaagcag ggtcacgtga
     1501 tgttcggcgt ggatatgaaa gtcgtcggcg atgacggcca ggaactcccc tgggacggca
     1561 cgtcgttcgg tgatctgcat gtgcgcgggc cgtgggtgat cgaccggtat ttccgcaagg
     1621 aggtttcgcc gctgatcgac ggctggtttc cgactggcga tgtcgcgact atcgatgccg
     1681 atggtttcat gcacatcacc gatcgcagca aggacgtgat caagtcgggc ggcgaatgga
     1741 tcagttcgat cgacctggag aacgtgatga tgtcgcatcc gcaggtggcg gaagcagcgt
     1801 gtattgcgtg ttcacatccg aagtggacgg agcgtccgct ggtggtggtc gtgctgcgtc
     1861 cgggcgcaac cgtcacgcgt gaggaactgc tcgcgttcta cgacggcaag gtggcgaaat
     1921 ggtggaagcc cgacgatgtt gttttcgccg atgaactccc gcatacggct accggcaagc
     1981 tgcagaagct tcgcctgcgc gagttgtatc gcgagcatgt gctgccgacg gttgatgaaa
     2041 aagtggtttg aatcctagtt tccgggcttt cccgtctcac cgggctgccg gcgtgcagcc
     2101 cggcagtctc ctcacgcttt cctctggctt ccaccccggg ccatccctca tctcaaaaat
     2161 aacagaattg aacgagcgtt cttttttgtg tattcttctc gggtaactca caatcccagc
     2221 gacacggtaa tcagcgcttt ccgggagttt cccggcgaat ctgactatcg caggcatcga
     2281 atggaggtag ac
//
LOCUS       DATGBK010001545         2010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_41852, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001545 DATGBK010000000
VERSION     DATGBK010001545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41852"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..693)
                     /locus_tag="VKJ77_21590"
     CDS             complement(43..693)
                     /locus_tag="VKJ77_21590"
                     /inference="COORDINATES: protein motif:HMM:NF040271.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5947 family protein"
                     /protein_id="HMC47924.1"
                     /translation="MNARGRGDQPGQRGWVAGLRTFARPPVTTLCELCGEPLDGTHPH
                     LLELDQHALRCCCRACALLFGNQQNARYKRVPQSVRWLSEFHLSDEQWDALAIPIGIA
                     FFYRDSAAQRVIAMYPGAAGAMQSSLDLSAWDRLVADNPILGTLEPDVEALLVNRVEG
                     AREHYRVPIDQCYALTGVIRARWRGLSGGVDAWRAIHACFAALKAGERLPEGVPNA"
     gene            complement(690..1229)
                     /locus_tag="VKJ77_21595"
     CDS             complement(690..1229)
                     /locus_tag="VKJ77_21595"
                     /inference="COORDINATES: protein motif:HMM:NF013286.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HMC47925.1"
                     /translation="MSDARVLEEQQRRIDELIAALATLDDTHARDIAQALLQVVLELH
                     ASGLARLAEIVTEADGADGPIVARLMQDKQVSALLLLHGLHPQDLASRVEHAVEGLRA
                     PLGAQGVRIELVDAREDLVRVRLAGVLTGKHVTPADVQNDIERAIFERAPDVARIEID
                     GMPDVNVHELRFVATLPTS"
     gene            complement(1226..>2010)
                     /locus_tag="VKJ77_21600"
     CDS             complement(1226..>2010)
                     /locus_tag="VKJ77_21600"
                     /inference="COORDINATES: protein motif:HMM:NF012592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HMC47926.1"
                     /translation="RKHPWNQTTLPRPQKRKFDGNYTWVMSPRWYDKRTGDYLALDTG
                     GGPIARLWATALAGLVDIGYVKSTGHSVKIYLPKTALKPEVEFEWKIPKWSNAIERDR
                     ARTYFQAYAAACALHFAEKALAELHAGHTRTFTPFQVPDEAIGCGFHEAVRGVLSHHL
                     VIKGGKIANYHPYPPTPWNANPRDIYGTPGPYEDAVQNTPIFEENGPDKFKGIDIMRA
                     VRSFDPCLPCGVHMYVGDGKTVDVAHSPTFGVPPGMKPGGHS"
BASE COUNT          380 a          682 c          568 g          380 t
ORIGIN      
        1 gaatgcagcg cgacctccgc accctcgacg acgaagtcaa gatcaggcat tcggcactcc
       61 ctcgggcaaa cgctcgcccg ctttcagcgc agcaaaacac gcgtggatcg cgcgccatgc
      121 atccacacca cccgacaatc cgcgccagcg cgcccggatc acgccggtca gcgcataaca
      181 ctggtcgata ggcacgcggt aatgctcgcg cgcgccttcc acgcgattca ccaatagcgc
      241 ttcgacatcg ggttcgagcg taccgaggat ggggttgtcg gcaaccaggc gatcccacgc
      301 gctcagatcg agcgacgact gcatggcgcc ggcagcaccc gggtacatcg cgatcacgcg
      361 ttgcgccgcc gagtccctat aaaaaaatgc aataccgatc gggattgcca acgcgtccca
      421 ttgttcgtcg ctcagatgaa actcgctgag ccagcgaacg ctttgcggca ctcgcttata
      481 gcgcgcgttc tgctggttcc cgaacaacaa cgcgcatgcg cggcaacagc accgcagcgc
      541 gtgctgatcc agttcgagca gatgaggatg agtgccgtcg agcggttcgc cgcacagttc
      601 acatagcgtc gtcaccggcg gccgggcgaa cgtacgtaac ccagctaccc agccgcgttg
      661 cccgggttga tccccccgcc cgcgtgcatt catgatgttg gcagcgtggc gacaaaccgc
      721 agctcgtgga cattgacgtc cggcatcccg tctatttcaa tgcgcgccac gtccggcgcc
      781 cgttcaaaaa tcgcccgctc gatatcgttc tgcacatcgg ccggcgtgac gtgcttgcca
      841 gtcagcacgc ccgccagacg aacgcgtacg aggtcctccc gtgcatcgac caattcgatc
      901 cttacgcctt gcgcaccaag cggcgcccgc agcccttcga ccgcatgctc gacgcggcta
      961 gccaggtctt gcggatgcag tccatgcagc aataacaatg cgcttacctg tttgtcctgc
     1021 atcagccggg cgacgatcgg accatcagcg ccatccgcct cggtcacgat ctcggccagc
     1081 cgcgcaagac cgcttgcatg cagctcgagc accacctgca acagtgcctg cgcaatatcg
     1141 cgcgcatgcg tgtcgtccag tgtcgccagt gctgcaatca gttcgtcgat gcgccgttgt
     1201 tgttcttcaa gcacgcgcgc gtcgctcatg agtgccctcc cggcttcatg cccggtggaa
     1261 cgccaaaggt tggcgaatgc gcgacatcga cggtcttgcc atccccgaca tacatatgga
     1321 cgccgcacgg caagcacgga tcgaagctgc gcacggcccg catgatgtcg atacccttga
     1381 acttgtccgg cccgttctct tcgaagatcg gcgtgttttg caccgcgtct tcatacggtc
     1441 cgggcgtgcc gtagatatcg cgcggattcg cattccacgg ggtcggcgga tacggatgat
     1501 agttcgcaat cttgccgccc ttgatcacca ggtggtgcga cagcaccccg cgcaccgctt
     1561 catgaaaacc gcagccgatg gcttcgtcag gtacctggaa cggcgtgaac gttcgtgtat
     1621 ggcccgcatg caattcggcc agcgccttct ctgcgaaatg cagcgcacac gctgccgcat
     1681 aggcctggaa ataggtccgc gcgcggtcac gttcaatcgc gttgctccac ttcgggatct
     1741 tccattcgaa ctcgacttcg ggcttcagtg ccgtcttcgg caaataaatc ttcacgctgt
     1801 gacccgtcga cttcacatag ccgatatcca ccagccccgc gagcgcggtc gcccacaacc
     1861 gtgcgatcgg accgccgccg gtatcgagcg cgaggtaatc gcccgtgcgc ttgtcgtacc
     1921 agcggggcga catgacccag gtgtagttac cgtcgaactt gcgtttctgc ggccgcggca
     1981 aggtggtctg gttccacgga tgcttgcgat
//
LOCUS       DATGBK010001546         2167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_133667, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001546 DATGBK010000000
VERSION     DATGBK010001546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133667"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..723)
                     /locus_tag="VKJ77_21605"
     CDS             complement(<1..723)
                     /locus_tag="VKJ77_21605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011850959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC47927.1"
                     /translation="MNKKLMTLAVIAAVALLASGYVAGTWHANTTMTTTTTSSTSEKE
                     PGRKVLYWHDPMMPNQHFDKPGKSPFMNMQLEPVFADEGASSGVKIDPGLQQNLGIRY
                     AAARRVDVASGFEAVGTTQFDESLADVVQSRVTGYIDRLYANAPMQRVSKGAPIASLF
                     VPDWLAPQEEYLALKRSGMDDAMLAASRERMRALSIPDAVVANLDRTGRVQTHVTLPA
                     PAAGVVTELNVRDGAMVAPGQTL"
     gene            complement(737..2032)
                     /locus_tag="VKJ77_21610"
     CDS             complement(737..2032)
                     /locus_tag="VKJ77_21610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012211077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC47928.1"
                     /translation="MHSSITAPVFRRGCARAPALALFLFLLSGGAAVKAQESALTLDA
                     ALLSATDRSASMQAAQSSVRASSQAAVRAGQLPDPTLKAGVDNLPINGSQRFTIGQDF
                     MTMRRIGIEQEWVSPEKRRLRTELANQEVDRERSGYLAQLVNVREQTATAWLNAAYAK
                     KALSLQQELADHMAHELSATQASYRGAKASATDVTQAQLMLAQTRDQLLKAQQSLQTA
                     LIGLSRWTAAPVPDVSGEPPAPESVVASLPPEELQRVEPALINASSDIGVADADTAVA
                     HSNRSPNWTWEVAYQQRGGQYSNMVSVGVSIPIPLNRRDRQDRDTAEKAELGTKARLM
                     YEDAQRQVDADIRNLSSTLASGRERIANLNASLLPAADQRLQLSTAAYRAGTGSLADT
                     FAARRAVLDARLQVLDLQRDVSLTWAQLEYQVVPPSMTY"
BASE COUNT          402 a          664 c          674 g          427 t
ORIGIN      
        1 gagcgtctgg ccgggcgcga ccatcgcgcc atcgcggaca ttcagttcag tgaccacgcc
       61 ggccgccggc gctggcaacg tgacgtgcgt ctgcacacgg ccagtgcgat caaggttggc
      121 cacgaccgca tccggtatcg acaaagcgcg catgcgttcg cgcgatgccg cgagcatggc
      181 gtcgtccatg ccgcttcgct tgagcgccag gtattcctct tgaggcgcca gccagtccgg
      241 tacaaacagc gacgcaatcg gagcgccttt ggacacacgt tgcatcggcg cattcgcata
      301 caaacggtcg atgtaacccg tcacgcgcga ctgaaccaca tcggccagcg actcatcgaa
      361 ctgcgttgta ccgacggcct cgaagccgga cgctacatcg actcgacgtg ctgcggcgta
      421 tctaatgccg aggttctgct gaagacccgg gtcgatcttc acgccgctcg acgcgccctc
      481 atccgcgaat acaggctcca gttgcatgtt catgaagggc gacttgccgg gtttatcgaa
      541 gtgctggttc ggcatcatgg gatcgtgcca atagagcact ttgcggccgg gctctttttc
      601 gctagttgat gacgtggtcg ttgtggtcat ggttgtattg gcgtgccagg ttccggccac
      661 ataccccgaa gcaagcaacg ccactgccgc aatgacagcg agcgtcataa gtttcttgtt
      721 catcgtgttc tcactgtcag taggtcatgg aaggcggcac gacctggtac tcgagttgag
      781 cccaggtgag cgatacgtcg cgctggagat cgagcacttg caggcgtgcg tcgagcacgg
      841 cgcgccgggc agcgaaggta tcggctagcg acccggtgcc ggctctataa gccgctgtcg
      901 atagctgcaa gcgctggtct gctgcaggca acagcgatgc gttcaggttg gcgatacgct
      961 cgcgcccact ggcgagcgtg gacgagaggt tgcggatatc ggcatcgact tgacgctgcg
     1021 cgtcttcgta catcaagcgc gccttcgtgc ccaactctgc cttctcggca gtatcgcgat
     1081 cttgcctatc cctcctgttc agcggaatgg gaatgctgac gccgaccgac accatgttcg
     1141 agtactggcc acccctttgc tggtacgcga cttcccaagt ccagttcggg ctgcggttgc
     1201 tatgggcgac ggcagtgtcg gcgtcagcga cccctatgtc cgacgacgca ttgatcagcg
     1261 caggctcaac acgctgaagc tcttctggcg gcagcgatgc aaccaccgac tccggcgcag
     1321 gcggctcgcc ggagacatcg gggacgggtg cggccgtcca tcgcgacaag ccaatgagcg
     1381 ccgtctgaag cgattgctgc gccttgagca actggtcccg ggtctgcgcg agcatgagct
     1441 gcgcctgggt cacatcggta gcactggctt tggcgccgcg ataagacgct tgcgtcgccg
     1501 acagctcatg cgccatgtga tccgccagct cctgctgcag cgagagcgct tttttcgcgt
     1561 atgccgcgtt gagccacgcg gttgccgtct gctcgcgcac gttgactagc tgtgcgagat
     1621 aacccgagcg ttcgcggtcg acttcctgat tagccagctc agtgcgcaga cggcgctttt
     1681 ccggcgacac ccattcctgt tcgatgccga tgcgccgcat cgtcatgaaa tcctggccga
     1741 tggtgaatcg ctgcgaccca ttgatgggta ggttatccac gccggctttg agcgtcgggt
     1801 cgggtaactg gccggctcta acagcggcct gcgagcttgc gcgaacggac gattgcgctg
     1861 cctgcatgga ggctgaacga tcagtcgcgg ataacagcgc agcgtccagc gtcaaggcgc
     1921 tttcctgcgc cttaaccgct gcgccgccgc taagaaggaa taaaaataga gctagtgcgg
     1981 gcgcacgcgc gcatccacgc cggaataccg gcgcggtaat agatgaatgc atttctcaac
     2041 cccaaacggt cgaatcccat agggaatcac gtcctggatg caggacgacc tcgccgctaa
     2101 agcggcgaac tggtgacgaa gggagttaga gcgcgcgagg aggtttccac aggccgtcag
     2161 gctcgcg
//
LOCUS       DATGBK010001547         2187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_87359, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001547 DATGBK010000000
VERSION     DATGBK010001547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87359"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..1232
                     /gene="pcaF"
                     /locus_tag="VKJ77_21615"
     CDS             30..1232
                     /gene="pcaF"
                     /locus_tag="VKJ77_21615"
                     /EC_number="2.3.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004197326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0019619 - 3,4-dihydroxybenzoate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoadipyl-CoA thiolase"
                     /protein_id="HMC47929.1"
                     /translation="MKEAFICDAIRTPVGRYGGALSSVRADDLGAVPLRALMERNKDV
                     DWNAVDDLIFGCANQAGEDNRNVARMSALLAGLPDSVPGSTINRLCGSGMDAIGVAAR
                     AIKSGEAALMVAGGVESMSRAPFVQGKATTAFSRQAEIFDTTIGWRFINPLMKKLHGV
                     DSMPETAENVATDYKVSREDQDAFAVRSQQKASRAQKDGTLAQEIVAVSIAQKKGDPV
                     LVSQDEHPRETSLEALARLKGVVRLDGTVTAGNASGVNDGAAALLLADEDSAKRFGLV
                     PRARVLGIATAGVPPRVMGIGPAPASQKLMKRLGMTIDQFDVIELNEAFASQGLAVLR
                     LLGIADDDPRVNPNGGAIALGHPLGMSGARLVTTATYQLHRTGGRFALCTMCIGVGQG
                     IAIAIERV"
     gene            1232..>2187
                     /gene="pcaB"
                     /locus_tag="VKJ77_21620"
     CDS             1232..>2187
                     /gene="pcaB"
                     /locus_tag="VKJ77_21620"
                     /EC_number="5.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047472 - 3-carboxy-cis,cis-muconate
                     cycloisomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-carboxy-cis,cis-muconate cycloisomerase"
                     /protein_id="HMC47930.1"
                     /translation="MSEPTFSATGRLTDLICGTREMNAVWSARQTVQSMLDVEAALAR
                     ASALHGVIPTGAVDAIVAVCNADLIDPDALMAGAASGGNLAIPLVKQLTAAVKFNDAD
                     AAKYVHWGATSQDIIDTGTVLQLRSTFDLLGAGLNDACRALALQAEKYRTTPAIGRTW
                     LQQALPITLGLKFAQWLDALTRHRERLAQCRSRVLALQFGGAAGTLASLRDKAPLVAQ
                     SLADDLGLQLPSLPWHTQRDRIAEAAACFGMLTGTLGKIARDISLQMQTEVGELAEPA
                     AAGKGGSSTMPHKRNPVGCAAVLTAAMRAPNLVATVFSGMVQ"
BASE COUNT          398 a          621 c          749 g          419 t
ORIGIN      
        1 gtaatcaggg agtattcaag gagatgggca tgaaagaagc tttcatttgc gacgcgattc
       61 gcacgccggt cggccgttac ggcggcgcgt tgtcctcagt tcgcgccgac gacctcggcg
      121 ccgtgccgtt gcgcgcattg atggaacgca acaaagacgt ggactggaac gccgtcgacg
      181 acctgatttt cggttgcgcg aaccaggcag gcgaagacaa tcgcaacgtc gcgcgcatgt
      241 cggcgttgtt ggcaggtttg cccgatagcg tccccggctc gacgatcaac cgcttgtgcg
      301 gatcgggcat ggacgcaatc ggcgtggccg cgcgagcgat caagtcgggc gaagcggcgt
      361 tgatggtcgc aggcggggtg gaaagcatga gccgcgcgcc gttcgtgcag ggcaaggcga
      421 ccacggcgtt ttcgcgtcag gcagagatct tcgatacgac catcggctgg cgcttcatca
      481 atccgttgat gaagaaactg catggcgtgg attcgatgcc ggaaacagcc gaaaacgtcg
      541 cgaccgacta taaggtgagc cgcgaagatc aggacgcgtt tgctgtgcgc agccagcaga
      601 aagcgtcgcg tgcgcagaag gacggcacgc ttgcgcaaga gatcgtggcg gtgtcgatcg
      661 cgcagaaaaa aggcgatccg gtgctggtct cgcaagacga acatccgcgt gaaacgagct
      721 tggaagcgct cgcgagactg aagggtgtcg tgcgtctgga cggcacggtg acggcgggca
      781 atgcgtcggg cgtgaacgat ggcgcggcgg ctttgcttct cgccgatgaa gacagcgcca
      841 agcgttttgg cctcgtgccg cgggcgcgtg tattgggcat tgcaaccgct ggcgtgccgc
      901 cgcgcgtgat gggcattggt ccggcgccgg cgtcacagaa gctgatgaag cgcctgggca
      961 tgaccatcga tcaattcgat gtgatcgaac tgaacgaagc gttcgcgtcg caaggtttgg
     1021 ctgtgctgcg tttgctcggt attgcggacg acgatcctcg cgtcaatccg aacggcggcg
     1081 caattgcgct cggccatccg ctcggcatga gcggcgcacg tttggtgacg accgcgacgt
     1141 atcagttgca tcggaccggc ggacgctttg cgctctgcac tatgtgtatc ggcgtggggc
     1201 agggtattgc gatcgccatc gagcgtgtgt gatgtctgag ccgacatttt cggcgacggg
     1261 acggctgacg gatctgatct gcggcacgcg cgagatgaac gccgtgtggt ccgcgcgcca
     1321 gaccgtccag tcgatgctgg atgtcgaggc ggcgctcgcg cgggcatcag ctttgcatgg
     1381 cgtgattccg acgggcgcgg tcgacgcgat cgtggctgtt tgcaacgctg atctgattga
     1441 tcccgacgca ttgatggccg gcgccgcgtc cggcggcaac ctcgcgattc cgctggtgaa
     1501 gcaactgacc gccgcggtca agtttaatga tgccgatgcc gctaagtacg tgcattgggg
     1561 tgcgacgagc caggacatca tcgataccgg tacggttttg caactgcgct cgacgttcga
     1621 tttattgggc gccggtttga atgacgcatg ccgggcgctc gcacttcagg cggagaaata
     1681 tcgtacaacg ccggcaatcg gccggacctg gcttcagcag gcgttgccga tcacgctcgg
     1741 ccttaaattc gctcaatggc tcgatgcgtt gacacggcac cgcgagcgtc ttgcgcagtg
     1801 ccgttcgcgt gtgctcgcgc tgcaattcgg cggcgcggcg ggcacgttgg cgagcttgag
     1861 ggacaaggcg ccgctagtcg cccaatcgct tgccgatgac ctcggcctgc aacttccttc
     1921 gttgccgtgg catacccaac gcgatcgcat cgcggaagca gcggcatgtt tcggcatgct
     1981 gaccggtacg ctcgggaaaa tcgcccgcga tatctcgctg caaatgcaga cggaagtcgg
     2041 cgaactggcg gaaccggctg ccgcgggcaa gggcggttca tcgacgatgc cgcacaagcg
     2101 caaccccgtg ggctgcgctg ctgttttaac cgccgccatg cgcgcgccga atctggtcgc
     2161 gactgttttc agcggcatgg ttcagga
//
LOCUS       DATGBK010001548         1697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_249390, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001548 DATGBK010000000
VERSION     DATGBK010001548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249390"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1697
                     /locus_tag="VKJ77_21625"
     CDS             <1..>1697
                     /locus_tag="VKJ77_21625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009895611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNVR domain-containing protein"
                     /protein_id="HMC47931.1"
                     /translation="GKTEEEDVVLGQLLQVVLDDIWWLIGTAAFIILAAAAYCYVAKP
                     VYSADAHVRVEQSDNTSQALTQTQTGAAIGNSSGALPTDAEIEIIKSRGVVAPVITQQ
                     KLNFSVSPMTIPVLGSIAERLATPGKPAKPWLGLTSYAWGGEQAAVDSIEVVQPLEGV
                     KLTMTALGDDRYSLATPEGVPLLQGRVGEMAKGNGVSIDVTKLVARPGTRFVVMRAND
                     LDAIAAFQSGITVVEQGKSTGVIQISLDNGDPARAAEIANALADSYLLQHIESKQADA
                     EKMLAFLKSEQPRLKGDLEHAEAALTEYQSKSGSINASDEAKVYLEGSITYEAQISAL
                     KLQMATLDQRFESSHPALIVAQQQLSQLEAERARFSERFKNLPASEVKAVSLQRDAKV
                     AEDIYVLLLNRVQELSVQKAGTGGNVHIVDAALRPGAPIKPKKILIMSAAVILGLILG
                     TGLVFLRRAMFKGIVDPDKVERLAGLPLVGLIPMSTEQVKLDAEAKRTERDRDRVSPI
                     LATMRPNDVCVEIMRSLRTSLQFTLMEARNHTVMLTGPASGVGKSFLAVNLAVLLAAS
                     "
BASE COUNT          346 a          503 c          549 g          299 t
ORIGIN      
        1 ggcaagaccg aagaagagga cgtcgtcctc gggcagttgc tacaggtggt cctcgacgac
       61 atctggtggc tgatcgggac cgcggcgttc atcattctcg ccgcggccgc gtactgctac
      121 gtcgcgaagc cggtctattc cgccgatgcg cacgtgcgtg tcgagcagtc cgacaacaca
      181 tcgcaagcgc tcacgcagac gcagacgggc gccgcgatcg gcaactcgtc gggtgcattg
      241 ccaaccgacg ccgagatcga gatcatcaag agccgtggcg tggtcgcgcc ggtcatcacg
      301 cagcaaaagc tcaacttctc ggtgagcccg atgaccatac cggtgctcgg cagcattgct
      361 gaacggctcg cgacgccggg caaaccggcg aagccttggc tcggcctgac gtcgtatgcg
      421 tggggtggcg aacaagccgc ggtcgattca attgaagtgg ttcagccgct ggaaggcgtg
      481 aagctgacca tgaccgcgct cggcgacgac cgctattcgc tggcgacgcc cgaaggtgtg
      541 ccgctgcttc aaggccgcgt gggtgaaatg gcgaagggca atggggtatc catcgatgtc
      601 acgaaactgg tggcccgtcc gggtacgcgc ttcgtagtga tgcgggccaa tgacctcgat
      661 gccatcgccg catttcagtc gggcatcacg gtcgtggagc agggcaagtc gacgggcgtg
      721 atccagatct cgctcgacaa cggcgacccg gcacgcgcgg ctgaaattgc gaatgcgctg
      781 gccgattcgt atctgcttca gcacattgaa agcaagcaag ccgatgctga aaaaatgctc
      841 gcattcctga agagcgaaca accgcggctg aagggtgatc tcgaacatgc cgaagctgcg
      901 ctgacggaat accaaagcaa gtccggttcg atcaacgcga gcgacgaagc gaaggtctac
      961 ctcgaaggca gcatcacgta cgaagcgcag atctccgcgt tgaagcttca gatggcgaca
     1021 ttggaccagc gcttcgaaag cagccatccg gcgcttatcg tcgcgcagca gcagctcagc
     1081 caactggaag ccgaacgtgc gcgcttcagc gagcgattca agaaccttcc ggcgtccgaa
     1141 gtcaaagcgg tatcgctgca acgcgatgcg aaggtggccg aagacatcta tgtgctgctg
     1201 ctgaatcgcg tgcaggaact gtcggtgcag aaagccggca cgggcggcaa cgtccatatt
     1261 gtcgatgccg cgctgcgccc gggtgcgccg atcaagccga agaaaatcct gatcatgtcg
     1321 gcggccgtga ttctcggcct gatccttggc actggcctcg tgttcctgcg ccgcgccatg
     1381 ttcaagggca tcgtggaccc ggacaaggtc gagcgcctgg cagggttgcc gctggtcggc
     1441 ctcattccga tgagcacgga gcaggtgaag ctcgatgccg aagcgaagcg cacggagcgt
     1501 gatcgcgatc gtgtctcgcc cattctcgcg accatgcgtc cgaacgatgt ctgcgtggaa
     1561 atcatgcgta gcctgcgcac gtcgctgcag ttcacgctga tggaagcgcg caatcatacg
     1621 gtgatgctga caggcccggc gtcgggtgtc ggcaagagct ttctcgcggt gaacctggcc
     1681 gtgctgctcg cggcgtc
//
LOCUS       DATGBK010001549         1676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_226852, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001549 DATGBK010000000
VERSION     DATGBK010001549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226852"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..403
                     /locus_tag="VKJ77_21630"
     CDS             <1..403
                     /locus_tag="VKJ77_21630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HMC47932.1"
                     /translation="FFNAEITQVLSDGVLVKYATGETQLTAVEPGNAKVGDSVTVGIR
                     PEHLHAATGATVEHGVSAKTMAVESLGDAAYLYSESSVAPEGIIARIPPLERHSRGEV
                     LKLGALPEHCHLFNADGIPYQRKIVEVLSAA"
     gene            complement(481..1428)
                     /locus_tag="VKJ77_21635"
     CDS             complement(481..1428)
                     /locus_tag="VKJ77_21635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HMC47933.1"
                     /translation="MPKSNEKLDLATRAAWLYYVAGNTQNEIAEKLQISRPVAQRLVA
                     FAVEKNLIRVRVDHRIADCLALAAKLSKRYGLSMCEVVPIDGDTPEQVDRKLAVAGAQ
                     VMERYLTDEKPLVISISTGRTLKAVVAQIGQLERPQHRLVSMVGAIAQDGSSNRYDVA
                     QHLSEKTGGKHFMLPAPLMADSRAEREQWCNHRLYRIVDALSGNADVAFIGIGNIGIN
                     CPLHEDGFITTAEVEEMMEAGAVAELLGLPIDALGVRVQSTTGERVTSLRLDAPPKRP
                     TIGFAGGLRKREAVIAALQGKWLSGLVTDELCAQAALDA"
BASE COUNT          308 a          516 c          505 g          347 t
ORIGIN      
        1 cttcttcaat gccgaaatca cgcaggtgct aagcgatggc gtgctggtga agtatgcgac
       61 gggtgagacc caactgacgg cggtcgaacc gggtaatgcg aaggtcggcg attcggtgac
      121 ggtcgggatt cgtccggagc atctgcatgc agcgaccggg gcgacggtgg agcacggggt
      181 gtcggcgaag acgatggccg tcgagtcgct cggggatgcc gcttatctgt actcggagtc
      241 gtcggtggcg ccggaaggga tcattgcccg gattccgccg ctcgagcgcc attcgcgtgg
      301 cgaagtgctg aagctgggcg cgttgcctga gcattgccat ctgtttaacg cggatggcat
      361 tccgtatcag cggaagattg tcgaggtgct gtcggcggct tgagttttac gttcttcgat
      421 gtgaaagcgc ccgggtcatc aatggcccgg gcgctttttt acactacgtt taaacctctc
      481 tcaagcgtcc agcgctgctt gcgcgcacaa ctcatccgtc accagccccg acagccattt
      541 accttgcaac gcggcgatca ccgcttcgcg ttttctcaag ccgccagcga accctatagt
      601 cggccgcttc gggggtgcat cgagccgcaa actcgtcaca cgctcgccgg tcgttgattg
      661 cacccgcaca cctagcgcgt cgatcggcag tccgagcaac tctgccaccg cgcccgcctc
      721 catcatctct tccacttcgg cggtcgtgat aaagccatcc tcatgcagcg gacaattgat
      781 cccgatattg ccgatcccga taaacgcgac atcggcgttc ccggacagcg catcgacaat
      841 ccggtacagc cggtgattgc accattgctc gcgctcggcg cggctatcgg ccatcaacgg
      901 cgcgggcaac atgaaatgct tgccgccggt cttttcggag agatgctgcg cgacgtcgta
      961 gcggttcgag gaaccgtcct gggcaatagc ccctaccatc gacaccaagc ggtgctgcgg
     1021 acgctccagt tgcccgattt gcgcgaccac ggcctttagc gtccggccgg tgctgatcga
     1081 gatcaccagc ggtttttcat cggtgagata acgctccatc acttgtgcgc ccgcgactgc
     1141 cagcttgcga tccacctgct cgggggtatc accgtcgatg ggcacgactt cgcacatcga
     1201 caagccgtat cgcttcgata acttcgcggc cagcgcgagg cagtcggcaa tccggtgatc
     1261 gacgcgcacg cggatcaggt tcttttccac cgcgaacgcg accagccgct gcgcgacggg
     1321 ccgcgagatc tgcagcttct ctgcaatttc attctgcgta ttgcccgcga cgtaatacag
     1381 ccacgcggcg cgggtggcga gatcgagttt ttcgttggac ttgggcacgg tggctcgatg
     1441 tctggtcgtt cgtgtcgaat acaaagagaa tcgcgcgcca taaaggcacg cgatagatcg
     1501 acattgtgca cgctcggcgc ctgagggcaa aaactctccg cgcgcttttt ttaagccatc
     1561 atgcgagccg cggacgcgcc ggatcgaaca atgggcgcac gtgctgatac aactcccgga
     1621 atcccttcag ccgttgccgc aggattgcgt ggcgttccgc gttcgggatg aactcg
//
LOCUS       DATGBK010001550         2666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_342119, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001550 DATGBK010000000
VERSION     DATGBK010001550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2666
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342119"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            246..1397
                     /locus_tag="VKJ77_21640"
     CDS             246..1397
                     /locus_tag="VKJ77_21640"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006476885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008746 - NAD(P)+ transhydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HMC47934.1"
                     /translation="MHIGVPAETRANEARVAATPETVKKLVSQGHRVTVQRGAGVPAS
                     YIDDAFAAAGAELVDANTAFAAALVLKVHSPNEAELLLLKSGAVIAGMLDPFNAENNA
                     RLAASGITAFALEAAPRTTRAQSLDVLSSQANIAGYKAVLVASNIYQRFMPMLMTAAG
                     TVKAARVLVLGAGVAGLQAIATAKRLGAVIEASDVRPAVKEQIESLGAKFLEVPYETD
                     EEREAAVGVGGYARPMPPSWLARQSVLVAERAKQADIVIATALIPGRPAPTLIAAETV
                     QQMKPGSVIVDLAAGRGPEYEGRRGGNCPLTEVDQVVMKHGVHLVGYTNLASMVATDA
                     SALYARNLLDFIKLIVTKEGTLNIDMADDIVAATLLCRDGQVTRGIKGD"
     gene            1399..1728
                     /locus_tag="VKJ77_21645"
     CDS             1399..1728
                     /locus_tag="VKJ77_21645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HMC47935.1"
                     /translation="MELVNHTVINLIIFVLAIYVGYHVVWNVTPALHTPLMAVTNAIS
                     AIVIVGAMLAAGLTIGGAGKFFGTLAVLLAAVNVFGGFLVTRRMLEMFKKKAPKQIAH
                     ASKGAAQ"
     gene            1725..>2666
                     /locus_tag="VKJ77_21650"
     CDS             1725..>2666
                     /locus_tag="VKJ77_21650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HMC47936.1"
                     /translation="MSMSVVTLLYLIASVCFIQALKGLSNPKTARIGNTFGMAGMAIA
                     ILTTIALIVKQASALGSDLSLGLGLLFGALVVGGAVGAYVAAKVEMTKMPELVAAMHS
                     LIGLAAVCIAYAVVSEPSAFGLAALGEPIPVGNRVELFIGTFVGAITFSGSVIAFGKL
                     SGKYQFRLFKGAPVVYPGQHMINLLLAIAMLGFGIIFMLTQSWLPFVIMTLIAFALGV
                     LIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNPMLIIAGSLVGSSGAILSYIMCR
                     AMNRSFFNVLLGGFGNEGGAAATGGAQEQRPVKSGSAD"
BASE COUNT          465 a          758 c          871 g          572 t
ORIGIN      
        1 tacgctaccc ggtttcattt aggcaaagct gtgatggctt gcagcggcgc tccgacagag
       61 cgttgcttcg acgttcccta gcgggctgag cgatagcgaa acggatttct agaccccgca
      121 ctgacatgcc gtggtgtgca acgaataccg tggacaactc actctgcgcg ccgtgctgtg
      181 tttgttggta gccgcataaa agcgtcggga ctgcggcgcg cataagaacg tgaggaggat
      241 tgaagatgca tatcggagtg cctgccgaaa cgcgggcgaa cgaggcgcgc gtcgccgcca
      301 cgccggagac ggtcaagaag ctcgtgtcgc aaggtcaccg ggtcacggtg cagcgaggcg
      361 cgggtgtgcc agcgagttat atcgacgacg ccttcgccgc tgcaggcgcc gagctagtcg
      421 atgcgaacac cgcgtttgcc gctgctctcg tcctcaaggt tcattcgccc aacgaagccg
      481 aattgctgct gctgaagtcc ggcgcggtga ttgctggcat gctggatcca ttcaacgccg
      541 aaaacaacgc gcgcctggcc gcgtccggca tcaccgcgtt tgctttggaa gccgcgccgc
      601 gaaccacgcg ggcacagagc ctggacgtgt tgtcgtcgca ggcgaacatc gccggataca
      661 aggctgtgct ggtcgcgagc aatatctatc agcgcttcat gccgatgctg atgaccgccg
      721 ccggtaccgt gaaagctgca cgcgtgctcg tgctgggcgc gggcgtggcg ggcctgcagg
      781 ccatcgcgac ggccaagcgg ctcggcgcgg tgatcgaagc atccgacgtg cgtcccgcgg
      841 tgaaggagca gatcgaatcg ctgggtgcga agttcctcga agtcccctac gaaaccgatg
      901 aagagcgcga agccgcggtc ggcgttggcg gttacgcgcg tcccatgccg ccaagctggc
      961 tcgcgcggca atcggtgctg gtggccgaac gtgcaaaaca agccgatatc gtcatcgcga
     1021 ccgcgctcat tcccgggcgc cccgcgccta cgctgatcgc ggcggaaacc gttcagcaga
     1081 tgaaaccggg ctcggtcatc gtcgatctgg ctgccggacg cggtcctgaa tacgaaggcc
     1141 ggcgcggcgg caattgtccg ctcactgaag tcgatcaggt cgtgatgaag cacggcgtgc
     1201 atctggttgg ctacaccaat ctcgcttcca tggtcgccac cgatgcctcc gccctctacg
     1261 cccgcaacct gcttgatttc atcaagctga ttgtgacgaa ggaagggacg ctgaacatcg
     1321 atatggccga cgatattgtc gccgcgacgc tcctgtgccg cgacggccag gtcacgcgcg
     1381 ggataaaagg agactgacat ggaactggta aatcacacgg tcatcaacct gatcatcttc
     1441 gtgctggcga tctacgttgg ctatcacgtg gtgtggaacg tcacgccggc gttgcacacg
     1501 cctttgatgg cggtgacgaa cgcgatttcc gcgattgtga ttgtcggcgc gatgctcgcg
     1561 gctggtctca cgattggcgg tgccggcaag ttcttcggca cgctcgcagt gttgttggca
     1621 gcggtcaatg tgttcggcgg cttcctggtt acgcggcgaa tgctcgagat gttcaagaag
     1681 aaagcgccca agcagatcgc ccacgcttcg aagggggccg cgcaatgagc atgagcgttg
     1741 tcactctcct gtatctcatc gcctcggtgt gttttatcca ggcgctcaaa gggctgtcga
     1801 atccgaagac ggcgcgcatc ggcaatacgt tcggcatggc cggcatggcc atcgcgattc
     1861 tgacgaccat cgcgttgatc gttaagcagg cttcggcgct gggatcggat ctgtcgttgg
     1921 gcttaggttt gctgttcggg gcgctcgtgg tcggcggtgc ggttggtgcg tatgtcgcgg
     1981 cgaaagtcga gatgacgaag atgccggaac tcgtcgccgc gatgcactcg ctgatcggtc
     2041 tggcggctgt gtgtattgcg tatgccgttg tttcggaacc ctcagcgttt ggtcttgctg
     2101 cgttaggtga accgattccc gtgggcaatc gcgtggagtt gtttatcggc acgttcgtag
     2161 gtgcgatcac gttttctggt tcggtgatcg cgttcggcaa gctgtcgggc aagtatcagt
     2221 tccgcttgtt caagggcgca ccggtcgtgt atcccggcca gcacatgatc aacctgctgc
     2281 tcgccatcgc gatgcttggg tttggcatca tcttcatgct gacgcagtct tggctgccct
     2341 tcgtgatcat gacgctgatc gcgttcgcgc tcggcgtgct gatcatcatc ccgatcggcg
     2401 gcgcggatat gccagtagtt gtgtcgatgc tcaactcgta ttcgggctgg gcggcggcgg
     2461 gtatcggctt ctcgttgaat aacccgatgc tgattatcgc cgggtcgctg gttggttcgt
     2521 cgggcgcgat tctgtcgtac atcatgtgcc gcgcgatgaa ccgttcgttc ttcaacgtgt
     2581 tgttgggcgg gttcggtaac gaaggcggtg cggcggcaac gggcggtgcg caagagcaac
     2641 gtccggtgaa atccggttcc gccgat
//
LOCUS       DATGBK010001551         1687 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_203526, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001551 DATGBK010000000
VERSION     DATGBK010001551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203526"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VKJ77_21655"
     CDS             complement(<1..281)
                     /locus_tag="VKJ77_21655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC47937.1"
                     /translation="MARTRAPDHDTQREQILELAAAKFAQTSYPSTSMADLAAASGTS
                     KARLYHYYASKEAILFDLLDRYTKRLMLIIAEVEGASQRRGLTEREAFA"
     gene            complement(317..1132)
                     /locus_tag="VKJ77_21660"
     CDS             complement(317..1132)
                     /locus_tag="VKJ77_21660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1835 domain-containing protein"
                     /protein_id="HMC47938.1"
                     /translation="MSTIHVTNGDHAAEILREALQIAAHDERVIPLKDDLAVGQLRGI
                     DDNPESRALFWQQVLNEQKFDFISKLKEQDALLRELAQDSGQVVIWHGQSASDQLTLR
                     RVAYTLRNTPQRLNEAKFTHEDQPFVTAGDGTQQRRGREDGATAVGMFTVAELGAKLP
                     TAVPISVLRIGRLALEWQEVKQINSETRRWRENTFISGTYSDVDETILQIASDGWQEA
                     RRLAGQVMGTSFGFLVSDSIAFWRCRELVAAGKLEIRGDLAKIAEAKLRRATH"
     gene            complement(1268..>1687)
                     /locus_tag="VKJ77_21665"
     CDS             complement(1268..>1687)
                     /locus_tag="VKJ77_21665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017423183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HMC47939.1"
                     /translation="PGPMMDAAEAALKSAGVPPKQVHVERFGTPLPQAGVPAIEITDD
                     TPAADLELIIDGKKRKLRLPYQGVSVLDVGLKAGLALPYACKGGVCCTCRAKVLEGEV
                     RMEKNYTLEQHEIDAGFVLTCQCHPISDRVVVSYDER"
BASE COUNT          276 a          519 c          533 g          359 t
ORIGIN      
        1 tcggcgaacg cctcgcgctc cgtcaatccg cgccgttggc ttgctccctc cacttccgcg
       61 atgatcagca tcaaccgctt cgtgtagcgg tcgagcaggt cgaaaaggat ggcttccttg
      121 ctggcgtagt agtgataaag ccgcgctttg gaggtgccgc tagccgcagc gagatcggcc
      181 atcgacgtgc tggggtagct ggtctgcgca aatttggcgg cggcgagttc gagaatctgc
      241 tcgcgttgcg tgtcgtggtc aggcgctctt gtacgggcca ttgagtctcg gagaattgct
      301 gggtcgatcg gggattctaa tgtgtggcgc gacgaagttt ggcctcggct atcttggcga
      361 gatcgcctcg aatctccagt ttgcccgcgg cgacgagttc gcgacagcgc cagaacgcga
      421 tggaatcgct gaccagaaag ccgaagctcg tgcccatcac ctggccggcg agccggcgcg
      481 cctcctgcca gccgtcgctg gctatctgga ggatggtttc atcgacatcg gaataggtgc
      541 cggaaatgaa cgtgttttca cgccatcggc gggtttcgct attgatctgc ttcacttcct
      601 gccattccag cgcaagacgg ccgatgcgca acaccgaaat gggcacggcc gtcggcagct
      661 tggcgcccag ttcggccaca gtgaacatgc cgaccgccgt cgcgccgtct tcacggccgc
      721 ggcgttgctg cgtgccgtcg ccagcggtga cgaagggctg gtcttcatgg gtgaacttgg
      781 cttcgttcaa gcgctgcggc gtgttgcgca acgtgtaggc gactcgtcgc agcgtaagct
      841 ggtcactggc gctctggcca tgccagatca cgacctgtcc gctgtcttgt gcgagttcgc
      901 gcaggagcgc gtcctgttcc ttgagcttcg atatgaagtc gaacttctgt tcgttcagca
      961 cctgctgcca gaacagcgcc cggctttccg ggttgtcgtc tatgcccctt agctggccga
     1021 ccgcaaggtc gtccttcagc gggatgacgc gttcgtcgtg ggcggctatt tgcaaggctt
     1081 cgcgcagaat ctcggcggcg tggtcgccgt tggtaacgtg gatggtgctc atcagtaacg
     1141 gtgaccgcaa acgtaagtag gctgcccgtg cgcggcgagt gcggcgacga ggcgcggcac
     1201 actgcattcg gaacgggcga cccctagtgt aagcgaatcg aatcagcgcg atccgccaac
     1261 ccggcgttca acgttcgtca tagctcacaa ccacgcgatc tgaaattggg tggcactggc
     1321 aggtcagtac gaaacccgcg tcaatctcat gctgctccag cgtgtagttc ttctccatgc
     1381 gcacttcgcc ttccagcacc ttcgcgcggc acgtgcagca cacgcctccc ttgcacgcat
     1441 agggcagcgc aagcccggct ttcaacccga cgtcgagcac gctcacgccc tgatacggca
     1501 ggcgcagctt gcgttttttg ccatcgatga tgagttccag atctgccgcc ggggtgtcgt
     1561 cggtgatctc gattgccggc acgcctgctt gcggcaacgg cgtgccgaag cgctcgacgt
     1621 gaacctgctt cggcggcacg cctgcgcttt tcagcgcggc ttcggcggcg tccatcatcg
     1681 ggccggg
//
LOCUS       DATGBK010001552         1886 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_342134, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001552 DATGBK010000000
VERSION     DATGBK010001552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342134"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..425)
                     /locus_tag="VKJ77_21670"
     CDS             complement(<1..425)
                     /locus_tag="VKJ77_21670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004528234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2837 family protein"
                     /protein_id="HMC47940.1"
                     /translation="MDTQLLIICALTFVIHVIATLAYAVRIAGVRTRRIAVSFALFGI
                     IALVSRTANSFQGPFLAKRVEEDLAHHVQQGMLADFRLFLLAATVATVIGALLIPTFQ
                     RYFSRAVIHFQIHRSLPRLALHVFSRGGISYIRGGARLPS"
     gene            708..1502
                     /locus_tag="VKJ77_21675"
     CDS             708..1502
                     /locus_tag="VKJ77_21675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 domain-containing protein"
                     /protein_id="HMC47941.1"
                     /translation="MTPSSENGRKGGQPAMHTPPVVSSQAWEAAREQLLVKEKAHTRA
                     GDALAAERRRMPWMAVETAYAFEGPAGKASLLDLFDGRRQLIVYRAFFEPGVFGWPEH
                     ACRGCSMVADQVAHVAHLNARDTTLVFVSRAPQADIARLKAQMGWEIPWFTLTDSFDA
                     DFGVDEWHGTNVFYRDDDRVFRTYFTNNRGDEQMGGTWNTLDFTPLGRQEMWEDSPEG
                     YPQTPTYKWWNWHDSYVADAVPDKKWVEVSDAGEAAFRNQDASTKP"
     gene            complement(1680..>1886)
                     /locus_tag="VKJ77_21680"
     CDS             complement(1680..>1886)
                     /locus_tag="VKJ77_21680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HMC47942.1"
                     /translation="DDVPGMRSSGTADWAGVFNSYYWIDRSKGIGGVLMTQLLPFFDM
                     PVIETLIGFETAVYQQVGAAVPAA"
BASE COUNT          406 a          578 c          599 g          303 t
ORIGIN      
        1 gacggaagac gagcgccccc gcgaatataa gaaatccccc ctcggctgaa gacgtgcaac
       61 gcgaggcgag gaagggatcg atgtatctga aagtgaatca ccgcgcggct gaagtagcgc
      121 tggaacgtgg gaatgaggag cgcccctatc accgtggcaa cggttgccgc gaggaggaaa
      181 agccggaaat cggcaagcat gccctgctgg acgtggtgag ccaggtcttc ttcaacgcgc
      241 tttgcgagga acgggccttg aaaggaattt gccgtgcgcg aaacgagcgc gatgataccg
      301 aaaagcgcga acgatacggc aattcgccga gtgcgaacgc ctgcgatccg aaccgcgtat
      361 gccagcgtcg cgatcacgtg gataacaaac gtgagcgcgc aaattatcaa cagttgagtg
      421 tccatggttc aggcagtagt cgcggccgga gcagtctaca cgccatagcg tctcagacga
      481 tcgcacggtt caacgcgccg acaatccccc gcttcgagcc cacgcgccgc ggctgtagtc
      541 agcatgtcga tcggaatagc gccgcacttg ttactcccaa ggttcgattt ccggtgccaa
      601 actcactcat agccaataac gaacaacgag cgatgagcag caaatggagt cgcgcttcac
      661 agccaagagg cgcgagaatt tgtcccaacc aggagattgc aaaagccatg acaccatcat
      721 ccgagaacgg acggaaaggc ggacagcctg ccatgcacac accaccggtc gtgtcgtcgc
      781 aggcgtggga agcggcccgc gagcaactgc tcgtgaaaga aaaggcccac acccgtgccg
      841 gcgacgcgtt ggccgcagag cgccggcgca tgccgtggat ggccgtggag acggcgtacg
      901 cgtttgaggg gcccgcgggc aaggccagcc tgctcgacct gttcgacggc cggcgtcaac
      961 tgatcgtcta ccgcgccttc ttcgagccgg gcgtgttcgg ctggcccgag cacgcctgcc
     1021 ggggctgctc catggtggcc gaccaggtcg cccacgtcgc tcacctgaac gcccgtgaca
     1081 ctacccttgt cttcgtctcg cgcgcacctc aggcggacat cgcgcgtctg aaggcacaga
     1141 tgggctggga gataccgtgg ttcaccctca cggacagctt cgacgccgac ttcggcgtgg
     1201 acgagtggca cggcacgaac gtgttttacc gcgatgacga ccgcgtgttc cgtacctact
     1261 tcaccaacaa tcgcggcgac gagcagatgg ggggcacctg gaacaccctc gacttcacgc
     1321 cgctgggccg tcaggaaatg tgggaggact cgcccgaggg ttatcctcaa accccgactt
     1381 acaagtggtg gaactggcat gacagttacg tcgcagacgc ggtgcccgac aagaagtggg
     1441 tcgaggtgtc ggacgccgga gaggcggcgt tccggaacca ggacgcaagc acgaagccat
     1501 gaccgtgagc cgggtctgtt cgggtggagc cgaagagcgg cgacggtcag tctgaggact
     1561 cggcgatcgg tcgtggcgcg tatgtccgca atcaagagcg ctcgctcagg accgactgcg
     1621 accgcacccg gctgagcacg caggcggtcg atcccgatct cagcgctcgc gctccggcgt
     1681 catgccgctg gtacggccgc tcccacttgt tggtacaccg cagtctcaaa gccaatgagt
     1741 gtttcgataa caggcatgtc gaagaagggc agcaactgcg tcatcagcac cccgccgatg
     1801 cccttggaac ggtcgatcca atagtaggaa ttgaagacgc ctgcccagtc ggcggtgccg
     1861 ctgctgcgca tgcccggcac gtcgtc
//
LOCUS       DATGBK010001553         1737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_249498, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001553 DATGBK010000000
VERSION     DATGBK010001553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249498"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VKJ77_21685"
     CDS             complement(<1..406)
                     /locus_tag="VKJ77_21685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HMC47943.1"
                     /translation="MTTKKTTLKSVFATGLLVLVPLAITLWVIGLVIGTMDQTLLLLP
                     ESWQPERLFGFHLPGLGAVLTLAFIFVVGLLTQNFVGQKLVEWWNVIVRHIPVVGPLY
                     TSVKQVSDTLLSSSGNAFRKALLIRYPHSGSYT"
     gene            complement(612..1031)
                     /locus_tag="VKJ77_21690"
     CDS             complement(612..1031)
                     /locus_tag="VKJ77_21690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HMC47944.1"
                     /translation="MPIYAYRCESCGFEKDALQKMSDAPLTHCPQCGKDTFAKQVTAA
                     GFQLKGSGWYVTDFRGGNNGAAAARKEEGGKKDEGAKAETKSEGASDSSNSSKESSKD
                     SGNQSSKSDSAAASAPAASSTTSAPAPSSKPASPASN"
     gene            complement(1268..>1737)
                     /locus_tag="VKJ77_21695"
     CDS             complement(1268..>1737)
                     /locus_tag="VKJ77_21695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004205161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HMC47945.1"
                     /translation="GCGSAYEALWLARENWPVRAIDFSPSAVAAAREQLGEYAGVLEQ
                     ADFFTYKPPFETNWIYERAFLCALPRDRWQDYAVRMAELLRPGALLAGFYFLGETPKG
                     PPFGIERSALDALLTPYFELVEEHEVTGSIDVFAGRERWLTWRRRAPKANPAA"
BASE COUNT          344 a          536 c          512 g          345 t
ORIGIN      
        1 tggtgtagga ccccgaatgc gggtaacgga tcagcagtgc cttgcgaaac gcgttgccgc
       61 tgctggagag caacgtgtcc gacacttgtt taacgctggt atacagcggt ccgaccacgg
      121 gaatgtgacg cacgatcaca ttccaccact cgaccagttt ctggccgacg aagttctgcg
      181 tgagcaagcc cacgacaaaa atgaaggcga gcgtcagcac agcgccgagg cccggcaaat
      241 gaaacccgaa cagccgctcg ggttgccagg attccggcag cagcagaagc gtctggtcca
      301 tggtcccgat cacgagcccg atcacccaca gcgtgatggc gagcggaacc agcaccagca
      361 agccggtcgc gaacacagat ttcaacgtag tctttttggt cgtcatttac acagccggaa
      421 ggccgccccg catgggcttc aacggtttgg ctggttcgcc gcccggtgca cattcatggc
      481 ttcgggcggt catcttcttg cgtgcgatcg gacagatcga gcagatcgtg caatagagcg
      541 cgctggaagc acggatcggg caagattgcg ctgcaggctt cgcgcttcgc tccagcaaca
      601 agcgcggagc gtcaattcga tgcaggcgac gccggtttgc tcgatggtgc cggagccgac
      661 gtcgtgctac tcgctgccgg cgcgcttgca gcggccgaat ctgacttcga cgactgattg
      721 cccgaatcct tgctcgactc tttgctcgaa ttactcgaat ccgatgcgcc ttcgctcttc
      781 gtttcggctt tggcgccctc gtccttctta ccgccctctt ccttcctggc agcggcggcg
      841 ccattgttgc cgccgcggaa gtcggtcacg taccagccgg aacccttcaa ttgaaagccc
      901 gcggccgtaa cctgttttgc aaatgtgtct ttcccgcact gcggacagtg ggtgagcggc
      961 gcatcgctca ttttctggag cgcgtctttt tcgaagccgc aggactcgca gcggtacgcg
     1021 tagatcggca tgtcactctt cctacgatta acgtttcggc gcttgcaaag ccttgaatta
     1081 tagcctcaaa ccatcggcca acccttaatt ttgggctcgc aggcccaggt ttcaagggga
     1141 tgcggcaggt ttgcgcagct ttcttttgtc gaaacacggc gtaagcaagc gcaggccgat
     1201 tgatgcaggt acggggtata tgaacgggat gtcagccgct gcaggagaca ccccggatac
     1261 gacggattca ggcggcggga ttagctttcg gcgcacgccg acgccaggta agccagcgtt
     1321 cgcgtcccgc gaagacgtcg atggatccgg tcacttcgtg ctcttccacg agctcgaaat
     1381 acggcgtcag caaggcatcg agtgcactcc gctcaatgcc gaacggcggg cccttgggcg
     1441 tctcgccgag gaaatagaaa cccgccagca gggcaccggg cctcagcagt tcagccatgc
     1501 gcacggcgta atcctgccac cggtctcgcg gcaaagcgca caggaacgcg cgctcataga
     1561 tccagttcgt ttcaaacggc ggcttgtacg tgaagaagtc ggcttgttcc agcacgccgg
     1621 cgtactcgcc cagctgttca cgcgccgccg caacggcgct tggagagaaa tcgatagccc
     1681 tgaccggcca gttttcgcgc gcaagccaca acgcttcgta tgcactgccg caaccgg
//
LOCUS       DATGBK010001554         2144 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_157087, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001554 DATGBK010000000
VERSION     DATGBK010001554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157087"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VKJ77_21700"
     CDS             complement(<1..233)
                     /locus_tag="VKJ77_21700"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018442736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HMC47946.1"
                     /translation="MKTDEESHLRMTQRRKEGHEKKQAAAALEKGLLIVNTGTGKGKT
                     TAAFGMAVRVLGHGMRLGVVQFIKGALHTSERD"
     gene            complement(233..640)
                     /locus_tag="VKJ77_21705"
     CDS             complement(233..640)
                     /locus_tag="VKJ77_21705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HMC47947.1"
                     /translation="MSTWVIGIGCRRGVSVEQIHAAVFAALGTRPLASTRALASIDSK
                     KDETALLEFAARHGLPLQFFSKQRVAQVETSTSERVQALLGIDGVCEPCALLASRNGR
                     IIVPKRVTGGVTVAIAEDDLGQQIKQQTDNQRT"
     gene            complement(637..1422)
                     /gene="cobA"
                     /locus_tag="VKJ77_21710"
     CDS             complement(637..1422)
                     /gene="cobA"
                     /locus_tag="VKJ77_21710"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HMC47948.1"
                     /translation="MSASAHVWLIGAGPGDVELMTLKAVRALSEADVVLVDDLVNPDV
                     LKFARANAVIRYVGKRGGHPSTPQAAIIEEMLAHVRAGHVVARLKGGDPFVFGRGGEE
                     VQALHAAGVQVEVVCGITAGIAAPAAVGIPVTHRDHTMGVVFVTGHGASREAGAGTEI
                     SAAEPDWSALVATKMTLVVYMGVRRLTDITHALVDAGLDPETPAAAIERATRPDQRHL
                     RAPLRHLAEAVERAGIGAPAIVVIGSVAGLGVASALDYVALQS"
     regulatory      complement(1592..1905)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
BASE COUNT          374 a          677 c          671 g          422 t
ORIGIN      
        1 aaatcgcgtt cggacgtatg cagtgcgccc ttgatgaact gcaccacgcc gagccgcatg
       61 ccatgtccga ggacgcgcac ggccatgccg aacgccgcag tggtcttacc cttgcccgtg
      121 cccgtattga cgatcaggag gcctttctcg agcgcggcag cggcctgctt tttctcgtgg
      181 ccttccttgc gccgctgggt catgcgcaga tgcgattctt cgtccgtttt catcatgttc
      241 tctggttgtc agtctgttgc ttgatttgtt gcccgaggtc gtcttcagcg atagcgacgg
      301 tcacgccacc ggtcactctt ttcggcacta tgattcgccc gttgcgcgac gccaacagcg
      361 cacagggttc gcagacgccg tcgatgccaa gcagcgcctg aacccgttcc gacgtgctgg
      421 tttcaacctg cgcgacgcgt tgcttggaaa aaaattgcag cggcaaaccg tggcgagcgg
      481 cgaattcgag cagggcggtt tcgtccttct tgctatcgat cgatgccagc gctcgagtgc
      541 tcgccagcgg ccgcgtcccc agcgccgcga acacggcggc atgaatctgt tcgacgctta
      601 caccgcgccg gcagcctata ccgatgaccc atgtgctcat gattgcagtg cgacgtaatc
      661 cagcgcgctc gcaacaccaa gcccggcgac cgagccgatc acgacgatcg ccggtgcacc
      721 gattcccgcg cgctccaccg cttccgcaag gtgcctgagc ggcgctcgca gatgccgttg
      781 atcgggacgg gtagcgcgtt ctatggcggc ggccggcgtc tctggatcga gcccggcatc
      841 gaccaatgcg tgtgtgatat ccgtgagccg ccgtacgccc atatacacga ccagtgtcat
      901 ctttgtcgcg accagcgcgc tccagtcggg ctcggctgcg cttatttctg tacccgcgcc
      961 cgcttcgcga ctggcgccgt ggccggtgac aaacacaacg cccatggtgt gatcgcgatg
     1021 cgtgaccgga atgccgacgg cggccggcgc ggcaatgccc gccgtgatgc cgcagacgac
     1081 ctccacttgc acgcctgccg catgcagcgc ctggacctct tcgccaccgc gcccgaagac
     1141 gaatggatcg ccgcctttca gcctcgctac aacgtgcccg gcgcgcacat gggcgagcat
     1201 ttcttcgatg atcgctgctt gcggggtaga cggatgtccg ccgcgcttgc cgacgtaacg
     1261 aatgaccgcg ttggcgcggg cgaacttcag cacatcggga ttcacgaggt cgtcgacgag
     1321 gacgacatcg gcttccgaca gcgcgcgcac ggctttgagc gtcatcagct cgacgtcgcc
     1381 ggggccggcg ccgatcagcc agacgtgggc ggacgcgctc atgattgtgc ctcgttcgcg
     1441 cgatcaggaa acacgctgcg tagtgagcag aacggtggga gcgagtgcgg gtgcaggtgt
     1501 tgcaaaattg gattcatgta agacgatatc aacattacgt ccttcatccg tccctcgcgg
     1561 atgtggcgtc cggtgtgcca taagagctaa agcgcaccac ttggcgactg gccggtatcc
     1621 gggcttggcg accgcattcc gctcgccttc ccgctcgtct gagcagtggc tgtggaggaa
     1681 atgggcgcgc ggttcgaatg agagtcatga gtgagagtca cgaatgcgag tcagtcgaag
     1741 cgggcgcggg tcgcttaccg ttgcggggac agcacaggtt tttgtcgaca cggcgcgtgt
     1801 agcctgaagc gtaagccttg aggatacgcg cgtgcacatc ctgtttcccg tttaactacg
     1861 cgcgcgggaa aagcgcgcgt gagcaccaga cgcgggccaa agatagcaca gcggatgtgg
     1921 attgcgctgg gcttttacag gctggaaccc gctggcagcg ccggtctttt gcgctcggaa
     1981 cggcaagatc tctcgtcagg aggccaggtc tgagtcccca cccgcacccg gcccaaacct
     2041 tgacgctaat cccccatcag cctagacttc gcggtagttt tctggtgctc gcgcgcggtc
     2101 tctgctgcgc gcagttaaac gggaagcagg gagcgttgcc ggaa
//
LOCUS       DATGBK010001555         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_319025, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001555 DATGBK010000000
VERSION     DATGBK010001555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319025"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            95..2032
                     /gene="tkt"
                     /locus_tag="VKJ77_21715"
                     /pseudo
     CDS             95..2032
                     /gene="tkt"
                     /locus_tag="VKJ77_21715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018425187.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
BASE COUNT          414 a          592 c          653 g          373 t
ORIGIN      
        1 agttgtcatg gcactacact tgctcgaagg acccggttgc ccgctgtggc gcctctcgtg
       61 cctcagcgcg ccctacgcaa aggagtcgtc gctcatgccg caaaccccct cgaagtcctc
      121 ttccgatctc gacaccctcg ccatcaacac catccgcacg ctgtccatgg acgccgtgca
      181 aaaggccaat tccggtcacc cgggtacgcc gatggcgctt gcaccggtgg ccttccatct
      241 atggcaaaac cacctgcgct atgacccggc cgagccgctg tggccgaatc gcgaccgctt
      301 cgtgctgtcg gtcggccatg catcgatgct gctgtattcc atgctgcacc tgaccggcgt
      361 gaaagccgtc gatcacgcgg gtaaggcaac gggtcgtccg gctgtgtcgc tcgatgacat
      421 caagcatttc cggcaactgg atagcaacac gccaggccat cccgaatacc gcatgacgac
      481 gggcgtcgaa accaccacag gtccgcttgg gcaggggctt ggaaacagtg tgggcatggc
      541 gatggccggg cgctggtacg agtcgcattt caacaagccg gatgcgaaga tctttgacta
      601 tcacgtgtac acgctgtgcg gcgacggcga catgatggaa ggcatctcgc atgaagctgc
      661 gtccatcgcg ggacatttga agctgtcgaa tctgacctgg atctatgaca gcaaccgcgt
      721 gaccattgaa ggccatacgg atctcgcgta cagcgacgac gtggaaacgc gtttcaaggg
      781 ctaccactgg aacacgctgc atgttgacga cgccaacgac ggcgccgcgt tcgaagccgc
      841 gctgaaacag gccaaggcca acaccgacgg acctacgctg atcgtggtga ggagcattat
      901 cggctggggt gcgccgcatg caggacagct ccgcggcgca tggcgagccg ctgggcgtag
      961 aggaaatcaa gctcgcgaag aagttttacg gctggccgga ggactcgagt ttcctcgtgc
     1021 cggacggcgt gtacgagcat ttcaacgagg gcatcggcgc acacggcaag gcggcgcgcg
     1081 aagcgtggca aaagagtttc gatgactacg cgacgaagta tccggacttg gcgaaggagt
     1141 ttgcgcagat cgaagcgcat gagttgccgg cgggttggga cgcggacatt cccacgttcg
     1201 acgccgatgc gaaaggcatg gcgtcgaggg agtcgtcggg caaggtgttg aacgccattg
     1261 cgaagaattt cccgtggatg atcggcggtt cggcggattt gtcgccatcg acgaaaaccg
     1321 atatgaagtt cgaaggcgcg ggcagtttcg agcacgacaa ctacgccggc cgcaacctgc
     1381 acttcggcat tcgcgagcac gtgatgggcg cgatatgcaa cgggcttgcg gtgtcgaacc
     1441 tgcggcccta cggctccacg ttcctgattt tcagcgacta catgaagccg cccatccggc
     1501 tttcggccgt catggaagtg cccgtgatct acgtgttcac gcacgattcc attggactgg
     1561 gcgaagacgg accgacgcat cagccggtcg aacaaatggt gtcgttgcgt ggtgttccgg
     1621 gactgagcac ttatcgtccg ggcgatgcga acgaagtcgc cgaaacgtgg cgtgccgcgc
     1681 tggccgagcc gcaacgtccg gcgtgcattg tggtgtcgcg ccagccgatg ccgactttcg
     1741 accggtcgaa atatgcatcg gcgaagggcg ttcacaaggg ggcgtatgtt ctcgccgatg
     1801 ccgaaggcgg caagaaaccg gaagtcatcc tgatggcaac gggcaccgaa gtgtcggtgt
     1861 gtgtcgacac ctacgagaag ctcaagagcg aaggcatcgc tgcgcgggtt gtctccatgc
     1921 cgtcatggga tctgttcgaa cggcaggacg acgcctataa ggattccgtg tttccgccgg
     1981 acgtcgacgc gcgcgtgtgc gtggagcagg caggcacgct tggctgggat cg
//
LOCUS       DATGBK010001556         3875 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_295995, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001556 DATGBK010000000
VERSION     DATGBK010001556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3875
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295995"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VKJ77_21720"
     CDS             complement(<1..272)
                     /locus_tag="VKJ77_21720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009913510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HMC47949.1"
                     /translation="MNASAELTPEVLAQRQREVVQALMAVLPTHCLLYREEDTAAYEC
                     DGLAAYRRLPLAVALPETEAQVQRVVQICARLDVPIVPRGAGTGLSG"
     gene            complement(465..1880)
                     /locus_tag="VKJ77_21725"
     CDS             complement(465..1880)
                     /locus_tag="VKJ77_21725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HMC47950.1"
                     /translation="MNHPVPPLAVRRTFPAALLDALKAAFAERVSTTTAVREHHGRDE
                     SPFDPQLPDAVVFVTSTEDVQTVVRLCAEHNVPVIPYGNGSSLEGHLLAVQGGVSIDM
                     SGLNQVLSINAEDLTVTVQPGISRKQLNEALKDTGLFFPIDPGADASIGGMSATRASG
                     TNAVRYGTMRENVLGLTVVLADGRVIKTGTRARKSSAGYDLTRLFVGSEGTLGVIVEI
                     TVRLYPQPEAVSAAVCAFPSMGDAVRATIETIQMGVPVARVEFLDSLAVRAINRHSNL
                     TFRESPMLFFEFHGTESSVKEQAETVQEIVAQNNGTDFEWATRPEDRSRLWNARHNAY
                     FAMLQLKPGSRAVTTDVCVPISRLAECVIETEQDLKASTLPCPIVGHVGDGNFHVAML
                     LDPAKPEEFEEAERINHRIVERALRMGGTCTGEHGVGLHKMGFMIEEHGEDAISVMRS
                     IKHALDPKNLMNPGKIFSYDA"
     gene            2085..2636
                     /locus_tag="VKJ77_21730"
     CDS             2085..2636
                     /locus_tag="VKJ77_21730"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HMC47951.1"
                     /translation="MGNRLSKISTRTGDDGTTGLGDGSRVQKDDARIAAIGDVDELNS
                     QLGVLLCEPLPEDVRAALSAIQHDLFDLGGELCIPGHSMIEKSHLARIDEWIAEYNAT
                     LPPLKEFILPGGSRAASLAHVGRTVCRRAERSIVALGRVDKINAAPRQYVNRLSDLLF
                     VLARVLNRVDGGSDVLWNHERKV"
     gene            2784..>3875
                     /gene="hmpA"
                     /locus_tag="VKJ77_21735"
     CDS             2784..>3875
                     /gene="hmpA"
                     /locus_tag="VKJ77_21735"
                     /EC_number="1.14.12.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010106227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008941 - nitric oxide dioxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0019825 - oxygen binding [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0051409 - response to nitrosative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NO-inducible flavohemoprotein"
                     /protein_id="HMC47952.1"
                     /translation="MTALTADQIARVKATAPVLAEHGVTITQHFYKRMFIHHPELKNV
                     FNQAHQQSSSQPEALARAVYAYAANIDNLGALGSAVTHIAHKHASLNIRPEQYPIVGE
                     NLLAAISEVLGDAVDGPTLDAWRAAYGQLAEILIGAEKGLYAQAAWSGFRPFVVFRRE
                     QESDEITSFYLKPSDGGPVCHFEPGQYVSVKRFVKEIGVDQPRQYTLSDAPNGQWLRI
                     SVKRERFQDLPPGYVSNLMHDGMEVGGIVEISAPMGEFTLDRSKTTPVVLISGGVGIT
                     PMVSMLASLAAQDSTRQISFVHACRNGRTHAFGRWLDAIVAQHPNVSRTVFYEKTHAD
                     DRPGTDFDFAGRLDFARIADKTLIPDADYY"
BASE COUNT          737 a         1152 c         1209 g          777 t
ORIGIN      
        1 cccgacaagc ccgtgcccgc gccacgcggg acgataggta cgtcgagccg cgcgcaaatc
       61 tgcacgacgc gctgaacctg cgcttcggtt tccggcagcg cgaccgcaag cggcagccgc
      121 ctgtacgcgg cgagcccgtc gcattcataa gcagccgtgt cttcctcccg atacagcagg
      181 caatgcgtcg gcagcacggc catcaacgcc tggaccactt cgcgctgacg ctgcgccagc
      241 acttccggcg ttagctcggc ggatgcgttc atgtctcctc ccggcggtgt ttgtgctctg
      301 gaccgtttcc aaaaagcaga gcgttgatct tgcacctgcg cgtggctgcc gtcgatcggg
      361 ctaattacgg ggacggagca tgtttttgcg ccggcacgtt gttcgcgccg gacgcttgct
      421 tgctcgctgc tcggctaacc ggaagtaacc aaccccatgt tcgatcaagc gtcgtacgag
      481 aagatcttgc ccgggttcat caggtttttc gggtcgaggg cgtgtttgat cgagcgcatc
      541 acgctgattg cgtcctcgcc gtgttcctcg atcatgaaac ccatcttgtg cagccccacg
      601 ccgtgctcgc cggtacacgt tccgcccatg cgcagtgcgc gctccacaat gcgatggttg
      661 atccgctcgg cttcttcgaa ttcttcgggc ttggccggat cgagcagcat ggcgacgtgg
      721 aaattaccgt cgccgacatg gccgacaatc gggcagggca gcgtgctggc cttcagatcc
      781 tgctccgttt cgatcacgca ttcggccagc cgcgagatcg gcacgcagac gtccgtggtc
      841 acggcgcggc tgcccggctt gagttgcagc atcgcgaaat aggcgttgtg acgtgcgttc
      901 cagaggcggc tgcggtcttc cggccgggtc gcccattcga aatcagtgcc gttgttttgc
      961 gcgacgattt cctgcaccgt ttccgcctgc tccttcacgc tgctttctgt gccgtggaat
     1021 tcgaagaaca acatgggcga ttcgcggaaa gtgaggttcg aatggcggtt gatcgcgcgc
     1081 acggccagcg aatccaggaa ctcgacacgg gccacgggca cgcccatctg gatagtttcg
     1141 atagtggcgc gcacggcgtc gcccatcgac ggaaatgcgc acaccgccgc cgacaccgct
     1201 tccggctgcg gataaaggcg cacggtgatt tcgacaatca cgccgagcgt gccttcggag
     1261 ccgacgaaca atcgtgtgag gtcatacccg gccgacgatt tgcgcgcgcg cgtgccggtc
     1321 ttgatgacgc ggccgtcggc taacacgacg gtgaggccga ggacgttctc gcgcatcgtg
     1381 ccgtaacgca cggcgttcgt tcccgacgca cgcgtcgccg acatcccgcc aatgctcgca
     1441 tccgcgccag gatcgatcgg gaaaaacagc ccggtgtcct tcagcgcttc gttcaactgc
     1501 ttgcgcgaaa tgcccggctg gacggtgacc gtcaggtctt cagcgttgat cgacaacacc
     1561 tggttcaagc ccgacatatc gatcgataca ccgccctgaa ccgccagcaa atgaccttcc
     1621 agcgacgacc cgttgccgta cggaatgacc gggacattgt gttcggcgca gagccggacc
     1681 acggtctgga catcttccgt gctggttacg aaaacgacgg catcgggaag ttgcggatcg
     1741 aacggtgatt cgtcgcggcc atggtgttcg cggactgcgg tggtggttga gacacgttcg
     1801 gcgaacgcgg ctttcagcgc gtcgagcaag gcggcaggga aagtgcggcg gacggcgagc
     1861 ggcgggacgg ggtggttcac ggcatgtctc cggacatcgg tgtgatggga tgttgggatg
     1921 cactgaatct cgcatcgaaa tgcgggaatc gtgcgtttta tggtgtcatt ttacgccgat
     1981 aggccagatc gagccttcct tgaccccgcc tccggccgat gccggcacgt tgcctataat
     2041 gagcgcggaa gctgaccggc gttctgcgcc aactggagaa catcatggga aatcgcctga
     2101 gcaagatatc gacgcgcacc ggcgacgacg gcacgaccgg cctcggcgac ggcagccgcg
     2161 tgcagaagga tgacgcgcgg atcgcggcga tcggcgatgt cgatgaactg aattcgcagc
     2221 tcggcgtgct gctctgcgaa ccgcttccgg aagatgtacg cgccgcgttg tcggcgatcc
     2281 agcacgatct cttcgatctc ggcggcgagc tctgcattcc tggccattcg atgatcgaga
     2341 agtcgcactt ggctcgtatc gatgaatgga tcgcggaata caacgcgacc ctgccgccgc
     2401 tcaaggagtt catcctgccg ggcggatcta gggcggcttc gctcgcgcac gtcgggcgga
     2461 cggtgtgccg gcgcgcggag cgatcgattg tggcgctagg ccgagtggac aagatcaacg
     2521 cggcgccgcg gcagtatgtg aatcggcttt ccgatttgct gttcgtgctg gcgcgcgtgt
     2581 tgaatcgtgt ggatggtgga agcgacgtgt tgtggaatca cgaacggaag gtctgaaagg
     2641 tctaatagcg tagagcgtgc tcggcgcgga ttgcgctggc gggcgccaaa ttcagcatcg
     2701 tcttatatcc cctgcgacaa atcgcgcgga tgtatggctc ctttaaagat gtattataaa
     2761 tgaatcttta aaggagccat acagtgaccg ccttgaccgc cgaccagatt gcccgtgtaa
     2821 aagccaccgc tcccgtgctc gccgaacatg gcgttaccat cacccaacac ttctacaagc
     2881 ggatgttcat ccaccatccc gagttgaaaa acgtcttcaa ccaggcgcat cagcaaagct
     2941 caagtcagcc ggaggcgttg gcgcgagcgg tgtatgccta tgccgcgaat atcgataacc
     3001 tcggtgcgct cggttcggcc gtcacgcata tcgcgcacaa gcacgcgagc ctgaatatcc
     3061 ggccggagca atatccgatc gtcggagaaa atctgctcgc tgctatatcc gaagtgctgg
     3121 gcgatgccgt cgatggaccc acgctcgatg catggcgagc cgcttatgga caactcgcgg
     3181 agattttgat cggggcggaa aaggggcttt atgcccaagc cgcgtggagc ggtttccggc
     3241 cattcgtggt gtttcggcgc gaacaggaaa gcgacgagat cacgtcgttt tatttgaagc
     3301 catccgatgg cggtccggtc tgccatttcg aaccaggcca gtacgtcagc gtgaagcggt
     3361 tcgtgaaaga aattggcgtt gaccaaccgc gtcaatacac gctctccgac gccccgaacg
     3421 gccagtggct acgcatttcg gtgaagcgcg agcggttcca ggacttgccg cctggatacg
     3481 tgtccaatct catgcacgac gggatggaag tcggcgggat tgttgaaatc agcgcgccga
     3541 tgggcgagtt cacgctcgac cggagcaaga ccacgcccgt tgtattgatc agcgggggcg
     3601 taggtattac gccgatggtg tcgatgctcg cgtcgctagc cgctcaggac agcacgcggc
     3661 agatatcgtt tgttcacgcg tgccggaatg gccgcacgca tgcattcggc cgatggctgg
     3721 acgcgattgt tgcgcaacat ccgaacgtgt cgcgtacggt cttctatgaa aagacccacg
     3781 ccgatgaccg cccgggaacg gatttcgact tcgcgggacg gctggatttt gcccgcatcg
     3841 ccgataaaac cctgattccc gacgccgatt attat
//
LOCUS       DATGBK010001557         1829 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_41977, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001557 DATGBK010000000
VERSION     DATGBK010001557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41977"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..1753)
                     /locus_tag="VKJ77_21740"
                     /pseudo
     CDS             complement(1..1753)
                     /locus_tag="VKJ77_21740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004530869.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
BASE COUNT          378 a          583 c          529 g          339 t
ORIGIN      
        1 cgttcctgcg tagaacccgc cggcgcctgg acgagcacga acatcgtgcc ctggtcttcg
       61 tcaggcaaga acgacttcgg cagacggacg aacaggaaac ccacccgacg atcaccacca
      121 gatagatgat gagccagcgc ccggagcgct tgatcacgtg ctccacgccg ctgtgatact
      181 tgtcctggct cttcgtgaac gtacggttga accagccgaa gaaacctttc ttctagacgt
      241 gatgatcctt gtcgatcggc ttcaggagcg tcgcgcacaa tgccggcgtc aagatcaacg
      301 cggtcagcac ggacaagatc atggccgcga cgatcgtcag cgaaaactgc cggtagatcg
      361 cgccgaccga gccgcccgag aacgccaccg gcacgaacac ggccgacagc acgagcgcca
      421 cgccaaccag cgcgccggta atctggtcca tcgccttgcg ggtggcgtcc cgtggagata
      481 aaccctcctc agccatcacc cgctcgacgt tttccaccac cacgattgca tcgtccacca
      541 gcaagccgat ggcgagcacc agcccgaaca tggagagcgt attgatggag aaacccacca
      601 accccatgac cgcgaaggta cccagcagca cgaccggcac ggcgatggtc gggatcaacg
      661 tggcccgcag gttctgcagg aacaggtaca tcacgaggaa caccagcacg atcccttcga
      721 tcagcgtctt gaccacttct tcaatagaca gcttcacgaa cggcgtggtg tcgtacggat
      781 acttcacgac caggcccggc gggaagtact tcgacagatc gtcgatcttc gcgcggaccg
      841 ccttcgccgt gttcagcgcg ttggcgcccg tggcgagctg gataccgaag ccggcggtcg
      901 gctgaccgtt gtacttcgtg tcgaagttgt agttctcacc gcccagctcg atgcgcgaca
      961 cgtccttcag ccgcacttgc gaaccatcct gattcacctt cagcaggatg ttgccgaact
     1021 gctcaggcgt ttgcagcagc gtggcttccg taatggttgc ctgcagcatc tggcccggca
     1081 ctgctggtgt gccgcccaag ccgccgcctg ccacctgcac gttttgtgcg gcgactgcgt
     1141 tcgtcacatc gagcggcgtc aacgcgtagt tgttcagctt ggttgcatcc agccagatcc
     1201 gcatggcgaa ttgcgagccg aacaacgtca ccgtgcccac cccgtcgata cggctgatcg
     1261 gatcttcgac cttcgacgcc acgtagttag cgaggtcgta acggcccatg gagccatctg
     1321 tggaaacgaa cgccatcacc atcaagaagc tgctgctcga cttcgtcacc ttggagccga
     1381 gctgctgaac ggcttgcggc aagagcggcg tcgcgagttg cagcttgttc tgcacctgca
     1441 cctgcgcgat gtccggattc gtgccggccg cgaatgtcag cgtaatggtg gccgtgccgg
     1501 agtcatcact ggtggaagac aggtagagca agtgatcgag gccgctcatc tgctgctcga
     1561 tcacctgcgt taccgtgttt tccaccgtgc tggcggacgc acccgggtac gtagcactga
     1621 tctgaatggc cggcggtgcg atcgtcggat actgcgcgac cggcaaggtg aagatcgaag
     1681 cgatccccgc cagcatcaga ataatggcga tcacccatgc aaaaatcggg cgatcgataa
     1741 agaactttgc catgaaacag gctccctttt agtgcgcctg actacgcgcc tgatgccgcg
     1801 gatgcgggtg ccggattgct cgaagccgc
//
LOCUS       DATGBK010001558         3169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_296004, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001558 DATGBK010000000
VERSION     DATGBK010001558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3169
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296004"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..432
                     /locus_tag="VKJ77_21745"
     CDS             <1..432
                     /locus_tag="VKJ77_21745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HMC47953.1"
                     /translation="DTRALHDEDDALAYPFAIIEADTSLLIDPKPMWIALLDDMLRAT
                     PVPLMAARFHKGLAIAIVQMTGRLLVSTQVRTVALSGGVMQNCVLFEQLTARLAACGF
                     NVLTHRQIPSNDGGIALGQAAITAARALASAFVEPRSTSCA"
     gene            423..752
                     /locus_tag="VKJ77_21750"
     CDS             423..752
                     /locus_tag="VKJ77_21750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013124505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HMC47954.1"
                     /translation="MCLGIPGQIVEISDADNNLALVDVGGVQRIINIAFIVDDERPPS
                     ACVGNWVLVHVGFAMSRLDEAEAMRTLALLRELGEAQMEMAAMMEGGGGPPKPDTLNH
                     HDGARHD"
     gene            745..1446
                     /locus_tag="VKJ77_21755"
     CDS             745..1446
                     /locus_tag="VKJ77_21755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013124506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HMC47955.1"
                     /translation="MTEHRALHGLYPFLHGEHQDAEKLDAALLESVAQKAQASIDAKR
                     AFFADNATAVVAVAHAIADVYRRDGRLFSMGNGGSSCDAAHIAVEFLHPVTAGRPALT
                     AVNLVADTAMMTAVGNDVGFAHIYVRQLVAQARRGDALIGVSTSGNSDNLLAAFAKAR
                     EMGVVTIGLAGHDGGKMAAPGALDHCLVVPSDSIHRIQETHVAIYHILWDLVHTLLAD
                     ERGSLRVPDAAERVS"
     gene            1443..2627
                     /gene="hypD"
                     /locus_tag="VKJ77_21760"
     CDS             1443..2627
                     /gene="hypD"
                     /locus_tag="VKJ77_21760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HMC47956.1"
                     /translation="MKYVDEFRDPEKARTLTHEIHRLVDRIVRDRGGLKRPLQIMEVC
                     GGHTHSIFRYGIHQMLPPEVEFVHGPGCPVCVLPMGRVDDCVALAERPEVIFTTFGDA
                     MRVPGSRKSLLKAKADGADVRMVYSPLDALAVARANPHREVIFFGLGFETTMPSTAMT
                     VLEAHAQRINNFSLFCNHITIIPTIKAILDSPDLHLDGFLGPGHVSMVIGTRPYRFIA
                     EHYRRPITVAGFEPLDVLQSVWMVLRQIAEGRCEVENQYGRIVPEDGNAQALSAIEQV
                     FELREFFEWRGLGSIDHSGVRIRERFAAYDAERKFPVANLKIADPKSCQCGEVLKGVI
                     KPQQCKVFGTACTPETPLGSLMVSSEGACAAHYRYARVDTSALFAHKAVTPGVVHPGA
                     GA"
     gene            2624..>3169
                     /locus_tag="VKJ77_21765"
     CDS             2624..>3169
                     /locus_tag="VKJ77_21765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HMC47957.1"
                     /translation="MNDRIGRLRDVTINLAHGGGGRAMRDLIEDVFVTAFDNPALAAL
                     EDQAVFPLADLARLGDRLAFTTDSYVVDPLFFPGGDIGTLAVSGTVNDLAMSGAKPLF
                     LSCGMVIEEGLAVDILRRVAASMQRVAIDAGVSIVTGDTKVVERGCADKLFINTAGVG
                     VVPPGVNISALRAQPGDVVIVN"
BASE COUNT          597 a          940 c         1008 g          624 t
ORIGIN      
        1 gatacacgcg cgcttcacga tgaagacgac gcgctggcgt atccgttcgc aatcatcgaa
       61 gctgatacat cgctgttgat cgacccgaag cccatgtgga ttgcgctgct tgacgacatg
      121 ctgcgcgcca cacccgtgcc gctcatggct gcgcgctttc acaagggtct tgcaatagcg
      181 atcgttcaga tgaccggtcg tttgctcgta tccacgcagg tccgtaccgt cgcgctctcc
      241 ggtggcgtca tgcagaactg cgtgctgttc gagcaactca ccgcacgcct tgcggcatgc
      301 ggctttaatg tactgacaca tcgccagata ccgtccaacg acggtggcat tgcgctgggg
      361 caagctgcca tcactgccgc gcgtgccctc gcatccgcgt ttgttgaacc acggagtacg
      421 tcatgtgctt aggcatcccg ggacagatcg tcgagatcag cgacgcggac aataacctcg
      481 cattagtcga tgtaggcggg gtgcagcgga tcatcaacat cgcgttcatc gtcgatgacg
      541 agcggccgcc gtccgcgtgt gtcggcaact gggtactggt gcatgtaggg ttcgcgatga
      601 gtcgtcttga cgaagccgaa gccatgcgca cgcttgccct gttgcgtgaa ctcggcgaag
      661 cgcagatgga gatggccgcg atgatggaag ggggcggtgg cccgccgaag cctgacacac
      721 tcaaccacca cgacggagcg cgccatgact gaacatcggg cgctacacgg cctgtatccg
      781 ttccttcacg gcgagcatca ggacgccgaa aaactcgacg ccgcgctact cgaatcagtc
      841 gcgcagaagg cgcaggcaag catcgacgcg aagcgcgcgt tcttcgcgga taacgccacc
      901 gccgtggtcg ctgttgcgca tgcgatcgca gatgtttatc gccgtgacgg aaggctcttt
      961 tcgatgggta acggcggctc gagttgtgac gccgcgcaca tcgcggtgga gttcctgcat
     1021 ccggtaacgg cggggcgtcc ggcgctcacc gcagtcaacc ttgttgccga taccgcgatg
     1081 atgacggctg ttggcaacga cgtaggcttc gcgcatatct acgtgcggca actagtggcg
     1141 caggcgcgcc gcggtgatgc actgatcggg gtatcgacca gtgggaactc cgacaacctg
     1201 ctcgccgcat tcgcgaaagc acgtgagatg ggcgtggtca ccattggcct ggccgggcat
     1261 gacggcggca agatggcagc gccgggtgcg ctcgatcatt gcctcgttgt accgagcgac
     1321 agcattcatc ggatccagga aacccacgtc gcgatttatc acatcctgtg ggacctggtc
     1381 cataccctgc tcgccgatga acgcggcagc ctgcgcgttc ccgacgcagc ggagcgcgtg
     1441 tcatgaaata cgtcgacgaa ttccgcgatc cggagaaagc ccgtacgctg acgcatgaga
     1501 tccatcggct agtcgatcga atcgtgcgcg accgtggtgg ccttaaacgg ccgttgcaga
     1561 tcatggaggt ctgcggcggt catacgcatt cgatcttcag gtacgggatt caccagatgc
     1621 tgccgcccga ggtcgaattc gtccacggcc ctggttgccc ggtctgcgtg ttgccgatgg
     1681 gccgcgtgga cgactgcgtg gcgctcgccg agcggcccga agtgatcttc acgaccttcg
     1741 gcgacgcgat gcgtgttccc ggttcgcgca agagcctgct aaaggcaaag gcggatggag
     1801 cagatgtgcg gatggtctat tcgccgctcg acgcgcttgc ggttgcccgc gcgaatccgc
     1861 atcgcgaggt gattttcttc gggctgggtt ttgaaaccac gatgccgagc acggcgatga
     1921 ctgtgctcga agctcatgcc caacgcatca ataacttctc gctgttttgc aaccacatca
     1981 ccatcatccc gacgatcaag gccattctcg attcccccga cctgcatctc gacggcttcc
     2041 ttggccccgg acacgtgagc atggtgatcg gaacgcgacc gtatcggttc atagccgagc
     2101 attatcggcg gccgattacc gtagccggat tcgaaccgct cgacgtgttg caatccgtgt
     2161 ggatggtgct acggcagatt gccgaaggcc gctgcgaagt ggagaaccag tacggcagga
     2221 tcgttccgga agacggcaat gcacaggcgc tgtcggcgat cgagcaagtg ttcgagttgc
     2281 gcgaattttt cgaatggcgc ggattgggat cgatcgatca ttcgggcgtc cggatacgcg
     2341 aacgcttcgc cgcttacgac gccgagcgca agttccccgt cgcgaacctg aagatcgccg
     2401 atccaaaatc ctgccagtgc ggcgaagtgc tcaaaggcgt gatcaagccg cagcagtgca
     2461 aggtattcgg caccgcgtgc acgccggaaa cgccgctcgg atcgttgatg gtatcgagcg
     2521 aaggcgcgtg cgcggcgcat tatcgttatg cacgcgttga tacatcggcg ttgttcgccc
     2581 ataaggcggt tacaccagga gtggttcacc cgggagcggg agcatgaacg accggatcgg
     2641 caggttacgc gatgtcacga tcaacctcgc gcatggcggt ggcggccggg cgatgcgcga
     2701 tctgatcgag gacgtctttg tcactgcctt cgataaccca gcgctcgccg cgctcgaaga
     2761 ccaggcggtt tttccactcg cggacctcgc gaggctcggc gaccggcttg cgttcactac
     2821 cgatagctac gtcgtcgacc cgttgttttt cccgggcgga gacataggca cgctggcggt
     2881 atcaggcacg gtcaacgatc tcgccatgtc gggtgcgaaa ccgctgtttc tatcgtgtgg
     2941 gatggtgatt gaagagggcc tagccgtcga tatcctgcgc cgcgtggcgg caagcatgca
     3001 gcgtgtcgcg atcgacgcgg gtgtgtcgat tgttacgggc gacaccaagg tggtcgagcg
     3061 cggttgcgcg gacaagctct tcatcaacac cgcaggcgtg ggcgtcgtgc cgcccggcgt
     3121 gaacatatcg gcactgcgtg cgcagccggg cgatgtggtg atcgtgaac
//
LOCUS       DATGBK010001559         1522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_111005, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001559 DATGBK010000000
VERSION     DATGBK010001559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111005"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VKJ77_21770"
     CDS             <1..234
                     /locus_tag="VKJ77_21770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA amidotransferase"
                     /protein_id="HMC47958.1"
                     /translation="RVATGGTSVALEIWELPLASFAALLLSEPAGLAIGKVTLRDGVQ
                     VLGVLAEPWLVENQKDITAHGSWRAYTGHTHTA"
     gene            264..1505
                     /locus_tag="VKJ77_21775"
     CDS             264..1505
                     /locus_tag="VKJ77_21775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HMC47959.1"
                     /translation="MRNTDEGPNTAPGYRIAMILLGIAITPVLLSSSSLGSQLSSLAL
                     IKVVVIGGIILTILSAITICVGEKARLPTYGIVKYPFGEKGAIAINILLAISLFGWIA
                     VTANMFGHSVHDLLAQQGFEIPVPLLVAVGCVIFVAATAFGFELLGKVAQFAIPVIAL
                     MLCYCVYVAAHGMVPVPAGFTDMNTGVAVSTVVGTIIVLVATLPDFGSFVHDRKHALI
                     GAVLTFLIAYPLLYWAGATPSGISGKASLLGAMAVFGAVLPAALLLIFATVTGNAGNM
                     FQGTLVVSTLFTRFPKWQITIALGVLAVIVGSMDIMAWFIPFLLFLGIATPPVAGIYI
                     ADFLLYRRGGYDERLLVSDPQVKVLTFVAWIIGSLVGFMTVKGVFSFTSIPSLDSIIV
                     ACACYAIFSRVTRLRSVASKI"
BASE COUNT          245 a          416 c          467 g          394 t
ORIGIN      
        1 cgcgtcgcga caggcggaac gtcggtcgcg ctcgagatct gggaactgcc gcttgcatca
       61 ttcgccgctt tgttgctgag cgaaccggcg ggtctcgcga tcggcaaggt gacgcttcgc
      121 gacggcgttc aggtgttggg cgtgctggcc gaaccgtggc tggttgaaaa ccagaaagac
      181 atcaccgcgc acggaagctg gcgtgcctat accggtcata cacacaccgc ctgatcgcct
      241 gaaaacctcc aaggaacatt tgtatgcgca acactgacga aggcccgaat acggcgcccg
      301 ggtatcgcat cgctatgatt ttattgggca ttgccattac gccggttttg ctctcgtcct
      361 ccagtcttgg gagccagtta tcgagcctgg cgctgatcaa ggtggtggtc atcggcggca
      421 tcatcctgac catcctttcg gcgatcacta tttgtgtcgg cgagaaggcg cggctgccga
      481 cctacggcat cgttaaatat ccgttcggcg aaaaaggggc gatcgcgatc aacatcctgc
      541 tcgcgatcag tttgttcggg tggattgccg tgactgccaa tatgttcggg cattcggttc
      601 acgatctgct cgcgcagcag ggcttcgaga ttcctgtacc tctgctggtt gcggtgggct
      661 gcgtgatctt tgtggccgcg acggcttttg gtttcgaact gctcgggaag gtcgctcagt
      721 tcgccatacc cgttatcgcg ttgatgctct gttattgcgt ctatgttgcg gctcacggca
      781 tggtgccggt gccagccggc ttcaccgata tgaataccgg cgtggccgtt tccaccgttg
      841 tcgggacgat cattgtgctg gtggccacgc tgcctgattt cggcagcttc gttcacgatc
      901 gcaagcacgc gttgattggc gcggtgctga cgttcctgat cgcttatccg ttgttgtatt
      961 gggcgggagc cacgccgagc ggcatatcag gtaaagcttc gttgctcggc gccatggccg
     1021 tgttcggcgc ggtgctgccg gccgctttgc tgctcatttt tgcgaccgta acggggaatg
     1081 ccgggaatat gtttcaaggc acgctggtcg tttccacctt gttcacgcga tttcccaagt
     1141 ggcagattac gattgcgctt ggcgtgctgg cggtgattgt cggcagcatg gacatcatgg
     1201 cgtggttcat cccgttcctg ctttttctgg gcatcgcgac gccgcccgtg gccgggattt
     1261 atatcgcaga ctttctgctg tatcggagag gcgggtatga cgagcggctg ctcgtgtccg
     1321 atccgcaggt gaaggtgctt acgttcgttg cgtggatcat tggatcgctg gtcgggttca
     1381 tgaccgtgaa gggcgtgttt tccttcacga gcatcccttc gctcgattcg attattgtcg
     1441 cgtgtgcttg ttacgccatt ttcagccggg tcacacgcct gcgcagcgtg gcttccaaga
     1501 tataaatcgg ctcattacta tc
//
LOCUS       DATGBK010001560         1974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_342255, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001560 DATGBK010000000
VERSION     DATGBK010001560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342255"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..951)
                     /locus_tag="VKJ77_21780"
     CDS             complement(<1..951)
                     /locus_tag="VKJ77_21780"
                     /inference="COORDINATES: protein motif:HMM:NF013260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HMC47960.1"
                     /translation="MATSRENPHVGRFRRKYGGDEGLRREISALFEILSGALGAEKVV
                     MRAGKLGTLKQMRSQAVPDRLLALQRLVFEDPTIEKPPAKPQYRKVIAEIEDALADLV
                     AQRNVEDTLERKINAKMVSRHQEYLRDLKMEALREDAGPETPATQRKLEDLQALDARN
                     LNTAALDVLRPRALSEIVGQESAIRALISKLASPYPQHVILYGPPGVGKTTVARLALE
                     LAKARPHAPFSANAPFVEASGTTLRWDHRETTNPLLGSVHDPIYQGSRRDFAEGGIPE
                     PKLGLVTRAHGGVLFIDEIGEMDPTMQTKLLKVLEDKRVMF"
     gene            complement(951..1400)
                     /gene="rplI"
                     /locus_tag="VKJ77_21785"
     CDS             complement(951..1400)
                     /gene="rplI"
                     /locus_tag="VKJ77_21785"
                     /inference="COORDINATES: protein motif:HMM:TIGR00158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HMC47961.1"
                     /translation="MKVILLSDVASLGKRGAVVNVADGYANNFLFPRKLATSASGGAL
                     KVLEEQNRAKARRQEEEVSGAKEIAEQLEQTVLTVTAKAGGNGRLFGTITNIQVAEAI
                     QSQLHVAIDRHKIEMKDGIKALGTYPVSVRRGNAIIAKTQVQVVSQS"
     gene            complement(1413..1673)
                     /gene="rpsR"
                     /locus_tag="VKJ77_21790"
     CDS             complement(1413..1673)
                     /gene="rpsR"
                     /locus_tag="VKJ77_21790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003452992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HMC47962.1"
                     /translation="MPPPKKRAAGGAAKKERRPKRKVCNFCADKLPDINYKDATRLRK
                     YISERGKILPRRISGNCARHQRGLTVAVKRARIIAFLPFTSE"
BASE COUNT          353 a          572 c          606 g          443 t
ORIGIN      
        1 gaacataacg cgcttatctt cgagcacctt gagcaacttg gtttgcatcg tcggatccat
       61 ttcgccgatc tcgtcgatga acagcacgcc gccgtgcgcg cgcgtgacga ggccaagctt
      121 cggttccgga attccgcctt cggcaaaatc gcgccggctg ccctgataga tcggatcgtg
      181 cacgctgccg agcagcgggt tcgtggtttc acgatggtcc cagcgcaacg tcgtgccgct
      241 ggcttcgacg aacggtgcgt ttgccgaaaa tggcgcatgc ggacgcgcct tcgcaagctc
      301 gagcgctaag cgcgcgaccg tcgtttttcc gacgccgggc ggtccgtaca aaatcacgtg
      361 ctgcggatag ggcgatgcga gttttgagat gagcgcgcga atggccgatt cttgtccgac
      421 aatttccgac aaggcgcgcg gacgcaggac gtcgagcgcg gcggtgttga ggttacgcgc
      481 atcgagcgcc tgcaggtctt caagcttgcg ctgcgtggcg ggcgtttcgg gcccggcgtc
      541 ttcgcgcaac gcttccatct tgagatcgcg cagatactcc tgatggcgcg acaccatctt
      601 tgcgttgatc ttacgttcga gcgtatcttc aacgttgcgc tgcgcaacga gatcggcgag
      661 cgcgtcctca atttccgcga taaccttgcg gtactgcggt ttggcgggtg gcttctcgat
      721 cgtgggatct tcgaatacca accgttgaag cgcgagcaaa cggtcgggga ccgcttgcga
      781 gcgcatctgt ttgagcgtgc cgagcttgcc ggcgcgcatc acgactttct cagccccgag
      841 cgcgcccgac agaatctcga acaacgcgga aatctcgcgg cgcaggcctt cgtcaccgcc
      901 gtacttgcgg cggaatcggc ctacgtgcgg gttttcacgc gaggtggcca ctaactttgg
      961 ctgacgacct gtacttgcgt tttcgcgatg atggcattgc cgcggcgaac ggacacggga
     1021 tacgtgccga gcgccttgat gccgtccttc atctcgatct tatgacgatc gatcgcgacg
     1081 tggagctgcg actggatggc ttcggcgact tggatgttcg tgatcgtccc gaacaaacgg
     1141 ccgttcccgc cggctttcgc cgttacggtt aacacggttt gctcgagttg ttcggcgatt
     1201 tctttcgcgc ccgaaacttc ttcttcttga cgacgtgcct tggcacggtt ttgttcttcg
     1261 agcactttga gcgcaccgcc ggatgccgac gttgcaagtt tgcgcgggaa caggaaatta
     1321 ttggcataac catcggcaac attgacgacg gctccgcgct taccgagcga agcgacgtcg
     1381 ctcagcaaaa tgactttcat tcgaagaacc tgctattcgg aagtgaacgg gaggaaagcg
     1441 atgatacggg cgcgctttac ggcgaccgtt aggccacgct gatggcgagc gcagtttccc
     1501 gaaatgcggc gcggcaaaat cttgcctcgt tcgctgatgt acttacgcag acgcgtcgca
     1561 tctttgtagt tgatgtcggg aagcttgtcg gcgcagaagt tacagacttt gcgcttggga
     1621 cgacgttctt ttttagcggc accgcctgcg gcgcgcttct ttggtggagg catggactca
     1681 ctttcatgta ggtgggtaac ggaccgccca acggcagccc ctacacacgt cccgttatgg
     1741 ggacgaccgc ccagtggcgg atttaggccc ggatacgaag agcgtcgcga ctaaagtcgc
     1801 ttacgatcgc gttccgggcc gcaagatagt ataccgcgcc cggatggcaa tggctacccc
     1861 ttacggctcg cttgtcacgg ttatgggctg accggcgaag cgctcgcgca gggttttctt
     1921 cgagattttg ccggtggccg tgtgcggcat ctcggtcacg aacaccacat cgtc
//
LOCUS       DATGBK010001561         1780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_157132, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001561 DATGBK010000000
VERSION     DATGBK010001561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157132"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..864)
                     /locus_tag="VKJ77_21795"
     CDS             complement(142..864)
                     /locus_tag="VKJ77_21795"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HMC47963.1"
                     /translation="MKLRSLRITRTRGLAVAAAAAALLSLTPSSAATADKQLSAVRGD
                     VAFRITEQGAPKRITGSQILPDDAFASTAFKAAAVLRMPDSSIIQIGDNTVVQIGAFR
                     PDAKSGTVINLKSGALRFTIVHPAGKQSNYTFATSTSQLAVRGTLAYLIAGPRGTQLY
                     CVECAPGDITMTTAVDTYSIVSGQTLNIRTVGGKAFDADIQSNARINNPAIDQFLNGY
                     SPFGEPMEKGTDFTGSGSGTSR"
     gene            complement(836..>1780)
                     /locus_tag="VKJ77_21800"
     CDS             complement(836..>1780)
                     /locus_tag="VKJ77_21800"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HMC47964.1"
                     /translation="PLFVGFVGTQLRATVGVVIAVAVVIIYSAVSVAVYGYTLHWLNL
                     IHVDVAVLLAALFVALYRTITEGADKRVIREMFGKHVSPALVDQMLNHDDPKAALGLQ
                     GKRVRVTIFYSDIRGFTAMSEKMTPEQIYGQLNEYFEEMCSIVFKYGGYVDKFIGDCL
                     MAVFSAPNPRPNDAYDATISALEQQEKILEMATAWAAEGRKVFTVGMGLNTGEVVMGN
                     LGSSDRLNYTVIGDNVNTAARLYNVAKGGQIIISESTYEEVKDRFIVNELQPVFVKGK
                     ELALRNFEIVARLEPGQENTSVLLDPNVIHEAAVAADH"
BASE COUNT          368 a          489 c          546 g          377 t
ORIGIN      
        1 ttccggcaac gacgctaggc gggacgccga agacgaggcg taagagcggg atgacgatga
       61 agccgccacc cattccaacg atcgagccaa aaatgctcgc gacgacgccc acgagaaaaa
      121 tctcgatgaa ttcgacagga ttcaacggct cgtgcctgat ccggatcctg tgaagtcggt
      181 tcctttttcc atcggctccc cgaacgggct gtagccgttc aaaaactggt cgatcgccgg
      241 attgtttatc cgggcattcg attgaatatc ggcatcaaac gctttaccgc cgacggttcg
      301 aatgttcagt gtttgtccgg aaacgatgga ataggtgtcg actgcggtcg tcatagtgat
      361 gtcgccgggt gcgcactcga cacagtagag ctgcgttccg cgcggtccgg cgatcaaata
      421 ggcgagcgtg ccgcgtacgg ctagctgcga ggtagatgtc gcgaacgtat agttcgattg
      481 tttgccggcg gggtgtacga tggtaaagcg cagagcgccg gacttcaggt tgatgacggt
      541 gccggatttt gcgtcgggac gaaacgcgcc gatttggacg accgtgttgt cgccgatttg
      601 gatgatggac gaatcgggca tgcgtagtac cgcggctgcc ttaaacgccg tcgacgcgaa
      661 cgcatcatcg ggtaagattt gcgatccggt aatgcgcttg ggtgcgccct gctcggttat
      721 gcggaacgcc acgtcaccac gaacggccga cagttgttta tcggccgttg cggcggacga
      781 tggcgtcaat gacaaaagcg cggctgccgc agcggcaacc gcgaggccgc gggtcctagt
      841 gatccgcagc gaccgcagct tcatggatga cgttgggatc gagcaggacc gatgtgtttt
      901 cctgacctgg ttctaaacgc gcgacgatct cgaagttgcg cagcgccagc tctttgcctt
      961 tgacgaacac gggctgcagt tcgttgacga tgaagcggtc tttgacttct tcgtacgtcg
     1021 actcgctgat gatgatctgg ccgccctttg cgacgttgta taaacgtgcc gcggtgttca
     1081 cgttgtcgcc gatgaccgtg tagttgaggc ggtcgctcga accgaggttg cccatgacga
     1141 cttcgcccgt gttcaggccc atgccgacgg tgaaaacctt acggccttcg gccgcccacg
     1201 cggtcgccat ctcgagaatc ttctcttgct gttcgagcgc ggagatcgtg gcatcgtatg
     1261 cgtcgttcgg acgcggattc ggggcggaga agacggccat caaacagtcg ccgatgaact
     1321 tgtcgacgta gccgccgtac ttgaagacaa tcgaacacat ctcttcgaag tactcgttga
     1381 gctgcccgta gatttgctcc ggcgtcatct tttccgacat cgccgtaaac ccgcgaatat
     1441 cggagtagaa gatcgttacg cgaacgcgtt tgccttgcag ccccagcgcc gctttcgggt
     1501 cgtcgtggtt gagcatctgg tcgacgagtg ccgggctaac gtgcttaccg aacatctcac
     1561 ggataacacg cttatctgcg ccttccgtaa tcgttcggta cagtgcgacg aacaaggcgg
     1621 cgagtagtac cgcaacgtca acatggatga ggttgagcca gtgcagcgtg tatccgtaca
     1681 ctgcgacgga cacggccgaa taaataatga cgaccgcgac ggcgataacg acgccgacgg
     1741 ttgcgcgcag ctgggtaccg acaaaaccca cgaaaagggg
//
LOCUS       DATGBK010001562         1612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_203629, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001562 DATGBK010000000
VERSION     DATGBK010001562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203629"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..517
                     /locus_tag="VKJ77_21805"
     CDS             <1..517
                     /locus_tag="VKJ77_21805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007875425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NmrA family transcriptional regulator"
                     /protein_id="HMC47965.1"
                     /translation="NLLNQLQILEQELGTLPMPVAFLRAAWFIENAAWDVAPARDSGV
                     VPSFLQPLDKLVPMVATADIGRVAAELLRESWTGRRVVELEGPQRISPDMIAESFARL
                     LGRDVSMTIVPRDTWEDLFRSQGMKNPTPRMQMIDGFNEEWIRFEGAENEVRKGRVPL
                     DTVLQSLIERA"
     gene            582..1334
                     /locus_tag="VKJ77_21810"
     CDS             582..1334
                     /locus_tag="VKJ77_21810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008450313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC47966.1"
                     /translation="MTRTGKNTAPEGRLDGKTVIVLGGSSGIGYAVAEYALAEGAHVV
                     IGSRHAGRIEAAVTALGSNAEGHALDLADEHAIEAFFNAIGTFDHLVFTAGDSLRLGE
                     VAATDLSLARRAFDIRYWGALAAVKYGAPHIVAGGSIVLTTGVAALRPRSGWAFGAGV
                     CGAMEALTRALAVELAPLRVNAVSPGLIATNLWQDMSEEDRQAMYEQAGKHFPVGRVG
                     EARDVAAAYLFLMESGFATGQTYVVDGGAVLV"
BASE COUNT          329 a          428 c          524 g          331 t
ORIGIN      
        1 gaatttgttg aatcagcttc aaatccttga gcaggaactg ggtacgctgc caatgcccgt
       61 ggctttcctg cgcgctgcat ggttcatcga aaatgcagct tgggatgtgg cgcctgcacg
      121 cgattcgggc gtcgtgccca gctttttgca gccgctcgat aaactcgtgc cgatggtcgc
      181 caccgccgat atcggccgcg tcgcagcaga actgctgcgc gaatcgtgga cggggcgccg
      241 cgttgtcgaa ctggaggggc cgcagcgtat ttcgcccgac atgattgccg agagctttgc
      301 gcgtttgcta ggtcgcgatg tcagcatgac catcgtgccg cgcgacactt gggaagactt
      361 gttccgctcg caaggaatga aaaacccgac gccgcgcatg cagatgatcg acggcttcaa
      421 tgaagaatgg atccgcttcg aaggcgctga aaacgaagtg cgcaaaggcc gtgtgccgct
      481 cgatacggtg ttgcaatcgc tgattgaaag ggcgtagaag aagggcgtcg atcctctgga
      541 acaggcttac gagcattcac atttattcag gagtacaacc aatgactcga acggggaaaa
      601 acacagcgcc tgaaggccgg ctcgatggca agacagtgat cgtgctcggc ggttcatcgg
      661 gtatcggcta tgcggtggcg gagtatgcgc tggccgaagg cgcgcacgtc gtgattggat
      721 cgagacatgc gggacgtatc gaggccgccg tcactgcgct tggatcgaat gctgagggcc
      781 acgcgctcga tctcgccgat gaacacgcta tcgaagcgtt ttttaacgcg atcggcacct
      841 tcgatcatct ggtgttcacc gcaggcgatt cgctgcggct tggtgaggtt gccgcgacgg
      901 atttatcgct ggcaagacgc gccttcgata tccgctattg gggcgcgctc gccgcggtca
      961 aatacggcgc gccgcacatc gtggcgggcg gttcgatcgt gctgacaacg ggtgtcgcgg
     1021 cgttgcgtcc acgcagcggc tgggcattcg gcgcaggcgt atgcggagca atggaagcgc
     1081 tcacgcgcgc gcttgctgtc gaattggcgc cgttgcgcgt gaatgcggtg tcgccaggat
     1141 tgatcgcgac gaacctatgg caggacatgt cagaagagga ccggcaagcc atgtacgaac
     1201 aagccggcaa gcattttccc gtcggacgag tgggcgaggc acgcgatgtc gcggcggcgt
     1261 atctgttcct gatggaaagt gggttcgcaa cgggacagac gtatgtggtg gacggcggag
     1321 cggtgctggt ttaggggact ggacgaagcg ctgtagatgc ttgaacgtca tcaaataccc
     1381 gctgccgtga cgtcacgaaa aagtagattg ggcgaaccct cccaatccat ttctttcact
     1441 tttaattgat taccttatca attcgttagc gacagatacg gcgacgccag cggcgtcggc
     1501 gggaaggaca gggcgccggt ttgtttcgtg aagctgtacc gcacgtacac ggcggccaga
     1561 tattcgcggt actgatacgc attgccaaga gacgctgtcg ccccgactgt aa
//
LOCUS       DATGBK010001563         2742 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_87525, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001563 DATGBK010000000
VERSION     DATGBK010001563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2742
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87525"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..840)
                     /locus_tag="VKJ77_21815"
     CDS             complement(<1..840)
                     /locus_tag="VKJ77_21815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC47967.1"
                     /translation="MELNDLAAFVSVARAGGFRDAARISGVSASSLSIAVRRLEAKLG
                     LRLLNRTTRSVAPTEPGLRLIEKLAPLFSEMEAALDVLNGFRDKPSGTLKLNVPSSTA
                     RIVLPTVIASFLKAYPDIRVEVVVEDGFVDVLSIGCDAGIRYDERLEQDMIAIPIGPR
                     VQRFATAAAPEYLDTHGRPEHPRELLSHACLRGQFAGGAKPTWDFERDGEVVRLDPTG
                     PLLVRPGAAMDLAISMAVAGVGVIHLFEGMLRPYLDSGALEPILESWWPSFSGPFLYY
                     PGHR"
     gene            942..1823
                     /locus_tag="VKJ77_21820"
     CDS             942..1823
                     /locus_tag="VKJ77_21820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HMC47968.1"
                     /translation="MSNFTPVSTFEFAGRPVRRLGYGAMQLAGPGVFGPPKDHDVAIA
                     VLREAVASGVNHIDTSDFYGPHITNQIIREALHPYQDDLVIVTKLGAVRGDDGAWLPA
                     MEPEDLRRGVHDNLRNLGLDVLDVVNVRIMGNIHSPAEGSIEKQVTALAELQREGLVR
                     HIGLSNVTAAQIVEAQGIATIVCVQNHYNLVHREDDTLVDELASQGIAYVPFFPLGGF
                     TPIQSSVLSTVAQTIGATPMQVALAWLLHRSPNILLIPGTSSLAHLRENLQAGQLSLS
                     DAVLAELDAIGQANGGH"
     gene            complement(1827..>2742)
                     /locus_tag="VKJ77_21825"
     CDS             complement(1827..>2742)
                     /locus_tag="VKJ77_21825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HMC47969.1"
                     /translation="AWLADAARKEISLVVFPEASLVGYGDTLNLRRRELVTLAESPDG
                     RSIDEVANAVERTGVAAGVGFIERAPDGRLFNSYVICMPGGVRCCHRKLHMVEHPGIE
                     RGEQYTVLDTTWGVRIGILIGADNYLIENVRMTALMGATLLVAPHRIYGSDSNGEAAL
                     QRLSPAQRVRPHAAHSAIAEENADAADWLRQSMIARASDNGMFVVFSNGSEQGSNQGG
                     MIIDPLGRVLAEHGSSSSPMVSAEVNPGLIAGSVGQQCLTARRSDSNGPFVRSMLPRD
                     NAFAERSGTPSRGAIALSFAQVSRIRQT"
BASE COUNT          563 a          878 c          792 g          509 t
ORIGIN      
        1 acgatgcccc ggatagtaga gaaatggccc ggaaaagctc ggccaccacg actcaagaat
       61 cggctccaac gcgccgctat cgaggtacgg gcgcagcatt ccctcgaaca ggtgaatcac
      121 gcccacgcct gccacggcca tactgattgc aagatccatt gccgcgcctg gcctgaccag
      181 cagcggcccc gtagggtcga gccgcaccac ctccccgtcc cgctcgaaat cccatgtagg
      241 cttcgcgccg ccggcaaact ggccgcgcaa gcacgcatgc gaaagcaact cgcgcgggtg
      301 ctcgggtctg ccgtgcgtat cgagatattc cggtgccgca gcggtcgcga aacgctgcac
      361 gcggggtccg atcggaatgg cgatcatgtc ctgctcaagc cgctcgtcat aacgaatgcc
      421 cgcgtcgcag ccgattgaca gcacatcgac gaaaccatcc tcgaccacga cctccacgcg
      481 gatgtcggga taagccttca ggaacgacgc gatgacagtt ggcaacacga tccgcgcggt
      541 gctcgacggc acgttgagtt tcagcgtgcc gcttggcttg tccctgaacc cgttcaagac
      601 atccaacgcg gcttccatct cgctgaacaa cggcgccagc ttttcgatga gacgcagccc
      661 cggttcagtg ggcgccacgc tacgcgtggt ccggttgagc aagcgcagcc cgagttttgc
      721 ctcgaggcgg cgcacagcga tgctcaggct cgaggcagag acgccactga ttcgggctgc
      781 gtcgcgaaaa ccgccggcgc gagcgactga cacgaacgcg gcaagatcgt ttaattccat
      841 ggtcactgtt cacattttta aacaacccgt gcaatttaga acggattatc gaacaacgca
      901 atcgcctcca tactggcgcc acattcacca aggagagcgc catgtcgaat ttcacccccg
      961 ttagcacctt cgaatttgca ggtcgtccgg tgcgtcgtct gggctacggc gccatgcaac
     1021 tggctggacc gggcgtgttc gggccgccga aggatcatga cgtagcgatt gccgttctgc
     1081 gcgaagcggt ggcctcgggc gtcaatcaca tcgataccag cgacttctac gggccacaca
     1141 tcaccaatca gatcattcgc gaagcgcttc acccgtacca ggatgatctc gtgatcgtca
     1201 ccaagcttgg cgccgttcgc ggtgacgacg gtgcgtggct gccggcgatg gaaccggaag
     1261 acctccggcg cggcgtccac gacaacctgc gcaatctggg tctggatgtg ctcgacgtgg
     1321 tcaacgtgcg gatcatgggg aacatccact cgcccgcgga aggatcgatc gaaaagcagg
     1381 tcacagcgct tgccgaactc cagcgcgagg ggcttgtccg ccacattgga ctgagcaacg
     1441 tgactgcggc ccagattgtc gaggcgcagg gcatcgcgac gattgtctgc gttcagaacc
     1501 attacaacct cgtccaccgg gaagatgaca cgctagtcga cgaactggcg agccagggca
     1561 ttgcgtatgt gccgttcttc ccgctaggcg ggttcacgcc gattcaatcg tcagtgctgt
     1621 ccacggtcgc ccaaacgatc ggcgcgacac cgatgcaggt ggcgcttgcc tggctcctgc
     1681 atcgctcgcc caacattctg ctgattccgg gcacgtcgtc gctcgcgcat ctgcgggaaa
     1741 atctgcaggc gggacagttg agcttatcgg acgcggtact cgctgaattg gacgcgatcg
     1801 ggcaagccaa cgggggacac tgaacgctag gtttggcgga tgcggctgac ctgagcgaaa
     1861 ctcagcgcta ttgcgcctct tgatggtgtc ccgctgcgct ccgcaaacgc gttatcgcgt
     1921 ggcagcatcg aacggacgaa cggcccgttg ctgtcagagc gacgggccgt taagcattgc
     1981 tggccaacgc tccccgctat caggccgggg ttcacttctg cagaaaccat cggactggat
     2041 gaggatccgt gttcggccag cactcgcccc aaaggatcga tgatcatccc gccttgattg
     2101 ctgccctgct ccgacccatt gctaaagact acgaacattc cgttgtcaga cgctcgcgcg
     2161 atcatcgact gtcgcaacca gtccgcggca tcggcgtttt cttcagcgat tgcgctatga
     2221 gcagcgtgcg gccgaactcg ttgcgccgga gaaagccgct gtaacgcagc ttccccattg
     2281 ctgtccgaac catagatccg atgcggcgca acgagtaacg tcgcgcccat caacgctgtc
     2341 atgcgaacgt tctcgatcag atagttatcg gcgccaatca gaatgccgat gcgcacgccc
     2401 cacgtcgtat cgaggacggt gtattgctcg ccgcgttcaa taccggggtg ttcgaccatg
     2461 tgcaattttc gatgacaaca acgcacgcct cccggcatgc aaatcacata gctgttgaac
     2521 aacctcccat ccggcgcacg ctcgatgaat ccgacacccg ccgctacgcc ggtgcgctcc
     2581 actgcattcg cgacttcatc gatcgagcga ccatcgggcg actcggcgag ggttacaagc
     2641 tcgcggcgac gaaggttcag ggtatcgccg tatccgacca ggctggcctc agggaaaaca
     2701 accagcgaga tctctttgcg tgcagcatcc gcaagccacg ct
//
LOCUS       DATGBK010001564         1779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_17966, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001564 DATGBK010000000
VERSION     DATGBK010001564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17966"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1779
                     /locus_tag="VKJ77_21830"
     CDS             <1..>1779
                     /locus_tag="VKJ77_21830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011658981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HMC47970.1"
                     /translation="FWYEGRQYEAPTPLVDLSKPAFRYGLGEIKVGTASHKLGVTVTT
                     DAKSYAVRSKAHVKVHVTLPDGKPAPAGTQIALAAVDEALLELMPNQSWNVLDAMLQR
                     RAYGVETSTAQMEIIGRRHFGRKAVPAGGGGGHSATRELFDTLLLWNPRVTLDANGEA
                     TVDVPLNDALTSFRIVAIGAVGASQFGTGSASIRSTQDLQLISGLPPLVRVGDQFRAL
                     FTLRNTTARTMQVVVTPRVPTLDLPAQNVTLAPDSSQEISWDVKTPDAIGMAATGALN
                     WEVSAAEQGGPKAADAVKLTQRVVAAIPVTVQQATITQVDGTFALPVAPPETAVASAD
                     GQIRGGIAVTLQPKLADGLPGVRRWFERYPYSCLEQQTSRALGLDDLTQWQTVIARMP
                     SYLDSDGLANYFPPSDDSRPYGSPALSAYLLAVSDEASKADPRFALPDDLRDKLAAAL
                     TNFVEGKIERKFWSPRQDLDYVKLSAIEALSHYGLAAPRMLSSITIAPNQWPTSALLD
                     YYSILSRVDGIAQRDDQRAQVEQILRARLTYSGTRLTFSTAADDDLYWLMTGPESNAA
                     RTALLFADNPAWKDEMPRLIGGLLAL"
BASE COUNT          330 a          572 c          559 g          318 t
ORIGIN      
        1 cgttctggta cgaagggcgg cagtatgaag cgcccactcc gctggtcgat ttgtcgaagc
       61 ctgcgttccg ctacgggctc ggcgagatca aggtgggtac ggcctcgcac aagctcggcg
      121 tgacggtcac gacggacgca aagtcgtatg ccgtgcgttc gaaggcgcat gtgaaggtcc
      181 acgtcacgct gccggatggc aagcccgcgc cggccggcac gcagatcgcg ctcgccgccg
      241 tcgacgaagc cctgctcgaa ctgatgccga atcaaagctg gaacgtactc gacgccatgc
      301 tgcaacggcg cgcatatggc gtcgagacat cgacggcgca aatggaaatc atcggacgcc
      361 gtcacttcgg gcgtaaagcc gtgcccgcgg gcggtggcgg cggacatagc gcgacacgcg
      421 aactgttcga tacgctcttg ctctggaacc cgcgcgtgac actcgatgcg aacggcgaag
      481 caacggtgga tgtgccgctc aacgacgcgt tgacgagctt ccgtattgtc gcaatcgggg
      541 ccgtgggtgc gagtcaattc ggtaccggca gtgcatcgat acgcagcacg caggatctgc
      601 aattgatctc gggcctgccg ccgctcgtgc gtgtgggcga tcagttccgc gcgctcttca
      661 cgctgcgcaa tacgaccgca cgtacgatgc aggttgttgt gacgccacgt gttcccacgc
      721 tcgatctccc cgcgcagaac gtgacgctcg ctccggattc atcgcaggaa atctcgtggg
      781 acgtgaagac gccggacgcc atcggtatgg ctgcaacggg cgcgttgaac tgggaagtga
      841 gcgcggcgga acaaggcggt ccgaaagccg ccgatgccgt caagctcacc cagcgtgtag
      901 tggccgcgat tcctgtgacc gtgcagcaag caacgatcac ccaggtcgac ggcacgttcg
      961 cgttaccggt cgcgccgccg gagaccgcgg tggcatcggc tgatggacag attcgcggtg
     1021 gcattgccgt cacgctgcag ccgaaactcg ccgatggcct gccgggtgtg cgacgctggt
     1081 tcgaacgtta tccgtatagc tgcctcgagc agcaaacgtc gcgcgcgctg ggtctcgatg
     1141 acctcacgca atggcagacg gtgatcgcgc gcatgccatc gtacctggac agcgacgggc
     1201 tcgccaacta cttcccgccc tcggacgact cgcggcctta cggcagtccg gcgttgtcgg
     1261 cctatctgct cgcggtcagc gatgaagcat cgaaagcgga tccccgcttc gcgctgcccg
     1321 acgacctccg cgacaaactc gctgctgcgc tgaccaactt cgtggaaggc aagatcgaga
     1381 ggaaattctg gtcaccgcgg caggacctgg actacgtgaa actctcggcg attgaagcgt
     1441 tgtcgcacta cggtctggcc gcgccgcgca tgctcagttc gatcaccatc gcgccgaatc
     1501 aatggccgac gtccgcgctg ctcgactact actcgattct ctcgcgtgtc gatggcatcg
     1561 cacaacgcga cgatcagcgc gctcaggtcg agcagatttt acgggcacgc ctgacgtatt
     1621 cgggcacgcg cctcaccttc tccaccgctg ccgacgacga tctctactgg ctcatgaccg
     1681 gtcccgaatc gaacgcggca cgcaccgcat tgctcttcgc cgataacccc gcgtggaagg
     1741 atgaaatgcc gcgcctgatc ggcggtttgc tcgcgttgc
//
LOCUS       DATGBK010001565         1657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_227013, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001565 DATGBK010000000
VERSION     DATGBK010001565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227013"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..568)
                     /locus_tag="VKJ77_21835"
     CDS             complement(<1..568)
                     /locus_tag="VKJ77_21835"
                     /inference="COORDINATES: protein motif:HMM:NF025637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HMC47971.1"
                     /translation="MNTALHQHVLVLNRLWQAVNVCTARRALTLLFQGQAQVVVGAED
                     GSFRTLNFHEWRDVSADAPHEESIHAISFRIRVPRVILLLMYDRMPKKEVKFTRHNIF
                     ERDKNTCQYCGDVFDRKDLNLDHVIPRDRGGPTTWENIVCSCIGCNTRKANRTPQEAG
                     MHLVRKPKRPKWRPFVQINFTLHRHDSWK"
     gene            complement(764..1264)
                     /locus_tag="VKJ77_21840"
     CDS             complement(764..1264)
                     /locus_tag="VKJ77_21840"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC47972.1"
                     /translation="MPETNTPIIAGTRIGHVHLKVADLDRALGFYCDVLGFEVTQRLS
                     SGAAFISAGGYHHHIGLNTWESAGGSPPPPRSTGLYHLAILYPTRALLADALRRLLAA
                     GVELDGASDHGVSEALYLRDPDGNGVELYWDRPKEKWPRSPDGGVAMFTRALDLDGLL
                     AEAPVN"
     gene            complement(1432..>1657)
                     /locus_tag="VKJ77_21845"
     CDS             complement(1432..>1657)
                     /locus_tag="VKJ77_21845"
                     /inference="COORDINATES: protein motif:HMM:TIGR01727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HMC47973.1"
                     /translation="GLLGSIPRLDRHAAYLATIEGMVPNMSTPPPGCRFAARCPFVSE
                     PCVAAPPPFAAVSPRHWSRCIKAPLERLVS"
BASE COUNT          292 a          524 c          549 g          292 t
ORIGIN      
        1 gcttccaact gtcatgccgg tgcagggtga agttgatctg cacgaacggc cgccatttcg
       61 gtcgcttcgg cttgcgcacg aggtgcattc ctgcttcctg gggtgtgcgg ttggccttgc
      121 gcgtgttgca cccgatgcac gagcacacga tgttctccca ggtcgtcggg ccgccgcggt
      181 cgcgcgggat gacgtggtcg aggttcaaat ccttgcggtc aaaaacgtcg ccgcagtatt
      241 ggcaggtgtt tttgtcgcgt tcaaaaatgt tatgccgcgt gaacttcact tcttttttcg
      301 gcatccggtc atacatgagc agcaggatga cgcgcgggac gcggatgcgg aacgaaatgg
      361 cgtggatgga ttcctcgtgc ggcgcgtcgg cggaaacgtc gcgccattcg tgaaagttca
      421 gcgtgcggaa cgagccgtcc tcggcgccga ctacgacctg cgcctgcccc tgaaaaagca
      481 gcgtgagggc gcggcgggcg gtgcagacgt tgaccgcctg ccagagccgg ttcaacacga
      541 ggacgtgctg gtgtagcgca gtgttcatgg cttcgacggg caggacgcta acagatgcga
      601 ctgcacaggt caattccgtg gtgtactgat ttggccggag cgcggctgtg tcgcagacca
      661 gccgcagcga ttgccacctt gctgcggctg atcccgccgg cgcgggacgc acagcggcgc
      721 tccgaaacac cgtaaatcag gacagcgcgc tgcccggcac ggtttaattg actggtgctt
      781 ccgcgagcag tccgtccaaa tccagcgcgc gcgtgaacat cgccacgccg ccgtcgggtg
      841 agcgcggcca tttttccttt ggacgatccc aatacagttc cacaccgttc ccgtccgggt
      901 cgcgcagata caacgcctcg ctgactccat gatccgacgc gccgtccagt tcgacgcccg
      961 ccgcgagcag tcggcgcaac gcatccgcca gcaacgcgcg cgtcggatac aaaatcgcca
     1021 gatgataaag tcccgtgctg cgcggcggcg gcggcgaacc gcccgcgctt tcccaggtgt
     1081 tcaatccgat gtgatgatga tagccgccgg ccgaaatgaa cgccgcaccc gaactcaggc
     1141 gctgcgtcac ctcaaatccc agcacgtcgc aataaaaccc gagcgcccgg tcgagatcgg
     1201 cgaccttgag atgaacatgc ccgatgcgcg tgccggcgat gatgggggtg ttggtttcgg
     1261 gcatagtttc tctccgcctg gaaggtatcc gcgccccgga tgctgcgcag cgcgtgagcg
     1321 gtgcgctgct aagccggggc ccatcttgcg tgccggtatg gtcccggacg cggtgcaccg
     1381 ctgaagaagc gctgcaccgc gtccgggaca cgtagcggag atggcgcgcc atcacgacac
     1441 cagcctctcc agcggcgcct tgatgcagcg cgaccagtgc ctggggctca ccgccgcaaa
     1501 cggcggcggt gcagcgacgc agggttcgct gacgaacggg cagcgcgcgg caaaccggca
     1561 gccgggcggc ggcgtgctca tgttcggaac catgccctcg atggtcgcca gatacgcggc
     1621 gtggcggtcg agccgcggga tcgagccgag caggccg
//
LOCUS       DATGBK010001566         2083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_42035, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001566 DATGBK010000000
VERSION     DATGBK010001566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42035"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VKJ77_21850"
     CDS             complement(<1..392)
                     /locus_tag="VKJ77_21850"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015856001.1"
                     /note="One of the components of the high-affinity
                     ATP-driven potassium transport (or KDP) system, which
                     catalyzes the hydrolysis of ATP coupled with the exchange
                     of hydrogen and potassium ions; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit B"
                     /protein_id="HMC47974.1"
                     /translation="MFDPAIVMPAIADSFRKLGPRTQLRNPVMFCVYIGSILTTVLWL
                     AALSGQAEAPAGFILAVSLWLWFTVLFANFAEALAEGRSKAQAASLRSAKRDVMAKKL
                     ESANPKSSLRITTATELRKGDIVLVETG"
     gene            complement(522..>2083)
                     /gene="kdpA"
                     /locus_tag="VKJ77_21855"
     CDS             complement(522..>2083)
                     /gene="kdpA"
                     /locus_tag="VKJ77_21855"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HMC47975.1"
                     /translation="FLRLQQWLPSNPQAFGPMTPDAAFNTAVSFVTNTNWQDYTPEST
                     ASYLSQMVGLTVQNFLSAATGIAVVVALIRGFARHTATTIGNFWVDLTRITLYILAPL
                     ATVIALVFVSQGAIQNFQSYQDVGTLQVTTYQTPKTDAQGNPVKDAKGNPVMVDNKAD
                     KQTIAMGPVASQEAIKMLGTNGGGFFNANSAHPYENPTPFSNFVQMIAMLVIPAALCV
                     VFGRMVGDKRQGYAILAAMTIAFTIACWGEISFEQAGNPLFTSLHVDQSASPMQAGGN
                     AEGKETRFGIAQSGIFTVATTAASCGAVNNAHDSLTPMGGFVPLLLIQLGEVIFGGVG
                     SGLYGMLVFAMLAVFVAGLMIGRTPEYIGKKIESYEMKMVAIVVLLTPFLVLLGASIG
                     VLTAAGQAGISNPGPHGFSEILYAYSSAANNNGSAFAGLTVSTPFYNISTGIAMWFGR
                     FGSIIPVLAIAGALAAKKRIATTAGSLPTHGPLFVVLLLGTVVLVGALTYVPALALGP
                     VVEHLMMLSGK"
BASE COUNT          427 a          647 c          626 g          383 t
ORIGIN      
        1 tcacccgttt ccacgaggac gatatcgccc ttgcgcagct ccgttgccgt cgtaatgcgc
       61 aacgacgact tcggattcgc cgactccagc ttcttcgcca tcacgtcgcg cttggcgctg
      121 cgcagtgaag ccgcctgcgc cttcgaacga ccctcggcca atgcctcggc aaagttcgcg
      181 aacagcaccg tgaaccacag ccacagtgag accgcgagaa taaatcccgc cggtgcttca
      241 gcctggcccg agagggccgc gagccacaac accgtggtca ggatactgcc gatgtagacg
      301 cagaacatca ccgggttacg cagttgcgta cgcgggccca gtttcctgaa cgagtccgca
      361 atcgccggca tgacgatggc ggggtcgaac atcgaacggg ctgccgaacg tgaatggccg
      421 cccgaaccac tcggctccgg tgttttctcc ggtgccttgt tcggcgtttt cactggcggt
      481 ttgacaattg tgttcatact ttcctctgta tcagtgaccg cttatttgcc cgagagcatc
      541 atcagatgct cgaccacggg acccagcgcg agcgcgggta catacgtcag ggcgccgacc
      601 agcacgacgg tgccgagcag caacacgacg aacagcggac cgtgggtcgg caagctgccg
      661 gccgtagtgg caatacgctt tttagcggca agcgcaccgg caatggccag caccgggatg
      721 atcgaaccga agcggccgaa ccacatggca atgccggtcg agatgttgta gaacggcgtg
      781 ctgaccgtga ggcccgcgaa ggcgctgccg ttgttgttgg cagcggagct ataggcgtag
      841 agaatctcgg agaatccgtg cggcccgggg ttcgatatac ccgcttggcc cgctgccgtc
      901 agcacgccaa tcgacgcacc aagcagcacc aggaacggcg tcagcaacac gacgatcgcc
      961 accatcttca tctcgtacga ctcgatcttc ttgccgatgt attcaggcgt gcggccaatc
     1021 atcaggccgg cgacgaacac cgcgagcatg gcaaagacca gcatcccgta taagcccgaa
     1081 cccacaccgc cgaagatcac ttcacccaac tggatcaaca ggagcggtac gaagccgccc
     1141 attggcgtca gcgagtcatg cgcgttgttc acagcaccgc acgatgcagc cgtggtggcg
     1201 accgtgaaga tgcccgactg cgcaataccg aagcgtgttt ccttgccttc agcgttaccg
     1261 cctgcctgca tcggggaagc gctttgatcc acatgcagcg acgtgaacag cggattgccg
     1321 gcctgctcga atgagatttc cccccaacac gcaatggtga acgcgatggt catcgccgcg
     1381 aggattgcgt agccctgccg cttgtcgccc accatgcgtc cgaacaccac gcacagtgcc
     1441 gccggaatga cgagcatggc gatcatctgg acgaagttgg agaacggcgt cgggttttcg
     1501 tacggatgcg cggagttggc gttaaagaac ccgccgccat tcgtgccgag catcttgatc
     1561 gcttcttgcg aggcaaccgg gcccatcgcg atcgtctgct tgtcggcctt gttgtccacc
     1621 atcaccggat tgcccttggc atccttgacc gggttcccct gagcgtccgt cttcggcgtc
     1681 tggtaagtcg tcacttgaag cgtgccgaca tcctggtacg actggaagtt ctggatcgcg
     1741 ccctggctca cgaacaccag cgcgataacc gttgccagcg gcgcaaggat atacagagtg
     1801 atacgcgtca ggtcgaccca gaagttgccg atggtcgtgg cggtatgacg tgcgaagccg
     1861 cgaatcagcg cgacgacaac ggcaatgccg gtagcagccg acaagaagtt ctgcacggtc
     1921 aggccgacca tctgcgagag atagctggcg gtcgactcag gcgtgtagtc ttgccagttc
     1981 gtgttggtca cgaagctgac ggccgtgttg aacgcggcgt ccggagtcat gggaccgaag
     2041 gcctgcggat tggacggcag ccattgttgc aagcgcagga acc
//
LOCUS       DATGBK010001567         2294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_157166, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001567 DATGBK010000000
VERSION     DATGBK010001567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157166"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1072)
                     /locus_tag="VKJ77_21860"
     CDS             complement(<1..1072)
                     /locus_tag="VKJ77_21860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC47976.1"
                     /translation="MDSFLTDDQRMIRDAARDFATEVLAPHAGQWDRDAALPDEVVRQ
                     LGELGLLGMIVPAEWGGTFSDYVAYALAIEEIAAGCASCSTLMAVHNSVGCGPILAFG
                     TEAQKAEYLPKLATGEMIGAFALTEPQAGSEANNLKTRAIERDGQWVLSGAKQFTTNG
                     ARAGMAIVFAITDPELGKKGLSAFIVPTNTPGFNVGRPEHKMGIRASDTCPISLEDCA
                     IPAANLLGARGEGLKIALANLEGGRIGIAAQAVGIARAAFDAARAYSHERVQFGKPIK
                     EHQSVANLLADMQTSLNAARLLVLHAARMRTEGLPCLSEASQAKLFASEMAERVCSQA
                     IQIHGGYGYLEDYPVERHYRDAR"
     gene            1298..>2294
                     /locus_tag="VKJ77_21865"
     CDS             1298..>2294
                     /locus_tag="VKJ77_21865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009276999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC47977.1"
                     /translation="MTAAPPAPRTPRGQGNERGTIAGDFVEEALRCAERRGVSRVALL
                     ERADINPATLARVSAAQYGRLWSAVADALDDEFFGQDSHPMRRGSFALLCHAALGSRD
                     GGQALTRIAGFLRLVLDDLRCEIDTGTTHVRIRLVDTAHLPTHSPRPMFAYATAFIMV
                     YGLLCWLVGRRIPVLAAHLRCPEPAAADEYRLMFCDAMFFDQPTSYVDLAPDCVMLPV
                     VQTAATLKVFLREAPANFIVKYRNPDSLAARIRRKLRQAPPVDWPASEAIAVALNMAE
                     ATLRRRLKQEGATYQSIRDALRRDLAIARLADTTQTIAEIAHALGFAEPSAFHRAF"
BASE COUNT          431 a          770 c          675 g          418 t
ORIGIN      
        1 tgcgggcatc gcgatagtga cgctcgaccg gatagtcttc cagataacca taaccgccgt
       61 gaatctggat ggcctgcgag catacccgct ccgccatttc cgacgcaaac agctttgcct
      121 gcgacgcctc gctcaggcac ggcaggcctt ctgtgcgcat gcgcgcagcg tgcaacacaa
      181 gcagacgcgc ggcgttcagg ctggtctgca tatcggcgag aaggttggct accgactgat
      241 gctccttgat cggcttgccg aactgcacgc gctcatgcga ataagcgcgt gcggcgtcga
      301 atgccgcgcg cgcaatgccc accgcctgcg ccgcgatgcc aatccgcccg ccctccagat
      361 tggccaacgc gatcttcaat ccttcgccgc gcgcacccag caagttggcc gcaggaatcg
      421 cacagtcctc gagtgaaatc ggacaggtat cggaggcgcg aatgcccatc ttgtgctcgg
      481 gccgcccgac gttgaagccc ggtgtattcg tcggtacgat gaacgccgac aagcccttct
      541 tcccaagctc cggatcggta atggcgaaca cgatcgccat gcccgcgcgc gcgccgttgg
      601 tcgtgaactg cttcgcgccg gaaagcaccc actggccgtc gcgttcaatg gcacgcgtct
      661 tcaaattatt ggcctccgat ccggcttgcg gctcggtcag ggcgaacgcg ccgatcatct
      721 cccccgttgc cagtttcggc aaatattcgg ctttttgcgc ttcagtgccg aacgcgagaa
      781 tcggtccgca gccgacagaa ttgtgcacgg ccatcagcgt ggaacatgag gcacaacccg
      841 cggcgatttc ttcgatagcc aacgcatacg ctacatagtc gctgaacgtg ccaccccatt
      901 ccgcaggcac gatcatgcca agcaagccga gctcgccgag ttgccgcacg acctcgtccg
      961 gcaaggcggc atcgcggtcc cattggccag cgtgcggcgc cagcacttcg gtggcgaaat
     1021 cgcgcgcggc gtcacggatc atgcgttggt catcggtcag gaagctgtcg atcatgatgg
     1081 tctggctcgt gtgaaataca gggaaacgca ctgggcttac actgctgcgc ttaagcggtg
     1141 gaacggtgaa atggatagca aatagcctca cgccagattc taggcgtgac tcatccgtct
     1201 gccgatgcct gaaacgatca agcttcctga gcgaatgcgc cacctagtga ctaccccaac
     1261 accgaaaagt ccacgcgatc agcggcccag gccggccgtg actgcggctc cgcccgctcc
     1321 caggacgcca cgcggccaag gcaacgaacg cgggaccata gcgggggatt tcgtcgaaga
     1381 agcgctgcgg tgcgccgagc gtcgcggcgt gtcacgcgtc gcgttactgg agcgagcgga
     1441 catcaatccc gccacgctcg cccgtgtatc ggctgcgcaa tacggccgct tatggagcgc
     1501 cgtcgcagac gcgctcgacg atgaattctt cggccaggac agccatccaa tgcgccgtgg
     1561 cagcttcgca ctgctttgtc atgccgcgct gggttcgcgc gacggaggcc aggcgctgac
     1621 ccgcatcgcg ggtttcctgc ggctcgtgct ggacgacctg cgatgcgaaa tcgacaccgg
     1681 cacaacacac gtaagaattc gcctcgtcga caccgcgcac ctccccaccc actcaccccg
     1741 cccgatgttc gcttacgcaa ccgcgttcat catggtctat ggtttgttgt gctggctggt
     1801 cggccgtcgc atcccggtgc tggccgcgca tctgcgctgc ccggaaccgg ccgcagccga
     1861 tgaataccgg ctgatgttct gcgacgcaat gttcttcgac caacccacgt cgtatgtcga
     1921 tctcgcgccg gactgcgtca tgttgccggt cgttcagacg gccgccacgc tgaaggtttt
     1981 cctgcgcgag gcgccggcca atttcatcgt gaaatatcgc aatcccgatt cgctcgccgc
     2041 gcggattcgc cgcaaattgc gtcaggcgcc gcccgtcgac tggcctgcta gcgaagccat
     2101 cgctgtggcg ctgaacatgg ccgaagccac actaagacgc cgcctgaaac aagagggcgc
     2161 gacctatcag tcgatccgcg atgcgctgcg gcgcgatctc gccatcgcgc ggcttgccga
     2221 cacgacgcag accatcgcgg agatcgcgca tgcgctcggg ttcgcagaac ccagcgcatt
     2281 tcatcgcgca ttca
//
LOCUS       DATGBK010001568         1598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_133868, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001568 DATGBK010000000
VERSION     DATGBK010001568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_133868"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1218
                     /locus_tag="VKJ77_21870"
     CDS             <1..1218
                     /locus_tag="VKJ77_21870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC47978.1"
                     /translation="LRAQLPRAFPDTTFSFPPADIVSQILNFGAPAPIDLQIRGANLE
                     ANFVYANQLLKAVRRVPGVADARIQQSNRSPVFAVDVDRSRAQELGLTARDVTNSMVV
                     NLAGSSQVAPTYFLSPDNGVSYSIVMQTPQYQIDSLNKLENMPISAAGVATPPILGGI
                     ANITRSTSNAVVSQYDIQSLVQIYATTQGRDLGAVASDIQKIIADTAKDVPRGSSVVL
                     LGQVDTMNKAFAGLLFGLLGAVVLIYLLIVVNFQSWSDPFVIVMALPAALAGIIWMLF
                     ATHTTLSVPALTGAIMCMGVATANSVLVISFAREVYEATGDPVRAALEAGFVRFRPVL
                     MTALAMIIGMAPMALGLGEGGEQNAPLGRAVVGGLIFATFATLMFVPVVFSMVHKKRS
                     AQPAGTAELAHDH"
     gene            1208..>1598
                     /locus_tag="VKJ77_21875"
     CDS             1208..>1598
                     /locus_tag="VKJ77_21875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018422859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HMC47979.1"
                     /translation="MTIDQTEPVSRKKLGLFGVIGICAAAIVVVTGIASREKSNADLR
                     TWTDEQAVPSVAVILPEARAQASTLELPGRLEAYSRAPIYARVNGYVKSWNVDIGASV
                     KSGQLLAEIEAPDLDQQLLQARADLTSA"
BASE COUNT          265 a          505 c          516 g          312 t
ORIGIN      
        1 ctgcgcgcgc agctgccgcg cgcttttccc gataccacgt tttcgtttcc gccggccgac
       61 atcgtcagcc agatcctcaa cttcggcgcg ccggcgccga tcgacctgca gatccgcggc
      121 gccaacctgg aggccaactt cgtctacgcc aaccagttgc tgaaggcggt ccggcgcgtg
      181 ccgggcgtgg ccgacgcgcg catccagcag tccaatcgca gcccggtgtt cgcggtcgat
      241 gtcgaccgct cccgcgccca ggagctgggc ctgaccgcgc gcgacgtgac caacagcatg
      301 gtcgtcaatc tggcgggcag ctcgcaggtt gcaccgactt acttcctcag ccctgataac
      361 ggggtgtctt attcgatcgt gatgcagacg ccgcagtacc agatcgattc actgaacaag
      421 ctggagaaca tgccgatctc cgcagccggc gtcgcgacgc cgccgatcct tggtggcatc
      481 gccaatatca cgcgctccac ctcgaacgcc gtggtctcgc aatacgatat ccagtcgctg
      541 gtgcagatct atgcaacgac gcaggggcgc gatctcggcg cggtggcgtc ggatatccag
      601 aagatcatcg ccgacaccgc caaggacgtg ccgcgcggca gttcggtggt tctgctcggg
      661 caggtcgata ccatgaacaa ggcgtttgcc ggcctgctgt tcggcctgct cggtgcggtc
      721 gtgctgatct atcttttgat cgtcgtgaac ttccagtcgt ggtcggaccc gttcgtgatc
      781 gtgatggcgt tgccggcggc gctggccggc atcatctgga tgctgttcgc aacgcatacg
      841 acgctctcgg tgccggcgtt gacgggcgcc atcatgtgca tgggcgtggc caccgcaaac
      901 agtgtgctgg tcatcagctt cgcgcgcgaa gtctatgaag caaccggcga tccggtccgt
      961 gctgcgctcg aggccggatt tgtgcgcttc cggccggtgc tgatgacggc gctcgccatg
     1021 atcatcggca tggcgccgat ggcgctgggc ctcggcgagg gcggcgaaca gaacgcaccg
     1081 ctcggccgcg ccgtggtcgg tggcttgatt tttgcaacct tcgcgacgct catgttcgtg
     1141 ccggtggtat tcagtatggt tcacaagaaa cgttccgcgc agcctgcggg gactgcggag
     1201 ttggcacatg accattgatc agaccgaacc cgtttcgcgc aagaaactgg ggctctttgg
     1261 cgtgattggc atctgtgccg cggccattgt cgtggtcacc ggaattgcct cgcgtgagaa
     1321 gagcaatgcc gacctgcgaa catggaccga tgaacaggcc gttccgtctg tcgccgtgat
     1381 attgccggaa gcgcgggcgc aggcctcgac gctggaactg cccgggcggc tcgaggccta
     1441 ttcgcgtgca ccgatctatg cgcgcgtcaa cggctacgtg aagagctgga acgtggacat
     1501 cggtgcgtcg gtcaagtccg ggcagttatt agccgagatc gaggcccccg acctcgacca
     1561 gcaactgctg caggcgcgtg ccgacctgac gagtgcgc
//
LOCUS       DATGBK010001569         3930 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_319099, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001569 DATGBK010000000
VERSION     DATGBK010001569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3930
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319099"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..569)
                     /locus_tag="VKJ77_21880"
     CDS             complement(<1..569)
                     /locus_tag="VKJ77_21880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acriflavin resistance protein"
                     /protein_id="HMC47980.1"
                     /translation="MKAARRVSPAWNYLGVLPFFAFAVLFLLLPTAWLMVGAFQDAQG
                     HFTLENFRQLLQPSVLDAYWISFKVSAASALGGGLLGLLLAWAAVQGKLPVWIRPTLM
                     TFSGVASNFAGVPLAFAFICTLGRVGLVTVLLKKYVGINLYSTGFSVLSFTGLTLTYL
                     YFQIPLMVLIITPALDGLKREWREACDCLG"
     gene            complement(789..1928)
                     /locus_tag="VKJ77_21885"
     CDS             complement(789..1928)
                     /locus_tag="VKJ77_21885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC47981.1"
                     /translation="MNQHGLRVTTTFRRLGGKASITAAIAALTAVAGQAVAAPPASLI
                     AAAKKEGQLTTIALPHDWCGYGALIEGFKAKYGITVNELNPDAGSGDEVEAIKANKGN
                     TGPQAPDVIDVGLSFGPTAQAAGLLQPYKVSTWASIPDSAKEKDGYWYGDYYGVLSFE
                     VNTDMIDKAPSDWPDLLKADYKNAIALAGDPRSANQAIQAVYAAGLSQSKGDASKAGA
                     AGLSFFSTLNKNGNFVPVIGKAASLAQGTTPIIVRWDYNALSDRDTLKGNPKVSVIVP
                     KTGVVAGVYVQGISAYAPHPNAAKLWMEYLYSDEGQIGWLTGYCHPIRFKDLEANKKI
                     PAALLAKLPPPSAYKNVVFPTLDEQNASKALITKQWDQVVGANVK"
     gene            2414..3184
                     /locus_tag="VKJ77_21890"
     CDS             2414..3184
                     /locus_tag="VKJ77_21890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HMC47982.1"
                     /translation="MWQEDRHQRIRALLATLERVSTERIMAELGVSRETVRRDLVDLE
                     ALGELRRVHGGVTRPADEAPIAERSHTHVKSKNAIARAATALVSSGQTLFIDAGTTTA
                     ILAEELAKLANLTIITNSIDVAQKMRATGEKTESSNEIILLGGSISDRAFATVGGTTV
                     SEILRYRADVALLSPVAIDHRHGATNFDHAETEVARAMVAHADRVVILADYSKIGQCS
                     RIAFCPINRVDTLITNKKGAEGPALLSLRKKLPQVILA"
     gene            complement(3189..>3930)
                     /locus_tag="VKJ77_21895"
     CDS             complement(3189..>3930)
                     /locus_tag="VKJ77_21895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PhoU domain-containing protein"
                     /protein_id="HMC47983.1"
                     /translation="NPELRPLYLDPVALSTPTLALANAAREALRIGDIIRTMLDNLLD
                     LMRANDPVKARSTIRMDDDVDQLYAAVKTYLARISREQLDEADSRRWTDIITLTINLE
                     HAGDILERVVTNILEKKITHRLAFSPEGLGELEDLHSRVILNLQLGLSVFLNSDLRSA
                     ERLLAEKERFRDLERSYSYAHLDRLAGQSARSIETSALHLDIISDLKRLNSLFCSTAY
                     PVLDAAGALRDTRLRRRVLDATYGNDSV"
BASE COUNT          801 a         1211 c         1166 g          752 t
ORIGIN      
        1 ccgagacaat cgcaggcttc gcgccattca cgcttcaggc cgtcgagcgc cggcgtgatg
       61 atgagaacca tcagcggaat ctggaagtac aggtaggtca gcgtcagccc cgtgaagctc
      121 aggacgctga aacccgtgga atacaggttg atgccgacat acttcttcag cagcaccgtg
      181 acgaggccga cgcgcccgag cgtgcagatg aacgcgaacg cgagcggcac gcccgcgaag
      241 ttcgacgcga cgcctgaaaa cgtcatcagg gtcgggcgaa tccacacagg caacttgccc
      301 tgcacggcgg cccaggccag cagcagtccg agcaagccgc cacccagcgc cgatgccgcg
      361 ctgaccttga agctgatcca gtacgcgtcg agcacgctgg gctgcagcaa ctggcggaaa
      421 ttttcaagcg tgaaatggcc ctgcgcgtcc tggaacgcgc cgaccatcag ccatgcggtg
      481 ggcagcagca ggaacaagac cgcaaacgcg aaaaacggta agacgccgag ataattccac
      541 gcgggcgaca cgcgtcgcgc cgccttcatg ccggggccga gcgaagggtt cgacttcccc
      601 tcgcgctcct catgtccgga catgggcgtg gcgatcttcg atgaagtgct catgatgtcg
      661 ctcttgactg acaggccgcg ctggggacca ggcacaaagc gcgagccgga agagtagccg
      721 gacatcgagt ccggctaccc gtgcactacg ttacttcgtg tgactactgc tttgactact
      781 tcaagcagtt acttcacgtt ggcgccgacc acctgatccc actgcttcgt aatgagcgcc
      841 ttcgaagcgt tttgctcgtc gagcgtcggg aacaccacgt tcttgtaggc cgacggcggc
      901 ggcaacttgg cgagcagcgc tgccgggatc ttcttgttcg cttcgaggtc cttgaagcgg
      961 atcggatggc agtagcccgt gagccagcca atctggcctt cgtccgaata caggtattcc
     1021 atccacagct tggcagcgtt cgggtgcgga gcgtaagcac tgatgccctg cacgtagacg
     1081 ccggccacaa cgcccgtctt cggcacgatc accgacacct tcgggttacc cttcagcgta
     1141 tcgcgatccg acagcgcgtt gtagtcccaa cgcacgatga tcggcgtggt gccctgcgcc
     1201 aacgaggccg ccttgccgat caccggcacg aagttgccgt tcttgttcag cgtactgaaa
     1261 aagctcaggc ccgcagcgcc ggccttcgat gcatcgccct tgctttgcga caacccggct
     1321 gcgtagacgg cctggatggc ctggttagcc gagcgcggat cgcccgcgag tgcaatggca
     1381 ttcttgtagt cggccttgag cagatcgggc cagtccgacg gggccttgtc gatcatgtca
     1441 gtgttcactt caaacgacag cacgccgtaa taatcaccgt accaatagcc gtccttctct
     1501 ttggccgaat caggaatcga cgcccaggtc gacaccttgt aaggctgcag caagccagcg
     1561 gcctgtgccg tcggtccaaa cgacaaaccg acgtcgatca cgtcgggcgc ctgcggcccc
     1621 gtgttgccct tgttcgcctt gatagcttcg acttcgtcac ccgaaccagc gtccggattc
     1681 agctcgttca ccgtgatgcc gtacttcgcc ttgaagccct cgatcaacgc gccataaccg
     1741 caccagtcgt gcggcaatgc gatcgtggtc aactggcctt ccttcttcgc agcagcgatg
     1801 agggacgccg gtggcgccgc cacggcctgc cccgccaccg cggtcagcgc ggcgatagct
     1861 gccgtaatgg atgccttgcc gcccaagcgg cgaaatgtgg tggtcactcg caacccgtgt
     1921 tgattcatgg tgattccatc ctctgcctgc gtgcttacgt ttttggaaag ttgcgtgctg
     1981 cgtgcatgct gcatagtccg aaacttgttt tttaatgcgc actcacatct ggcgcgcacg
     2041 cgactctggc ggccaaatgt ttaagaacaa tgacgacggt gaaaaagaca gcagttcagg
     2101 actattttca ggcactgcgg acggtccaag ggaactatct gcgagtgtga cgaagagact
     2161 aagttcaaat acccaaattc gcaagtatcc aaaaaaatac aacatcggca gcgccagttc
     2221 ttgttaatct ttcagctgga ttttcgagta actgaagtaa cgcgcggcgc tcggcagcta
     2281 attgatattg gcgacacacg ggcgacacat agtccgttca caagacttta agctgccgaa
     2341 gtggatcggc ggccatgccg cttctaatcg ttttcactag tacccgttcg acttcaacgc
     2401 tcaggaatac agcatgtggc aggaagatcg tcatcagaga attcgcgcgc tgcttgccac
     2461 gcttgaacgc gtgtcgaccg aacgcatcat ggccgaactc ggcgtgtcgc gcgagacggt
     2521 ccggcgcgat ctggtggatc tggaagcact gggtgaattg cggcgcgtgc atggcggcgt
     2581 gacgcgcccg gctgacgaag cgccgatcgc cgagcgcagc catacgcacg tcaagtcgaa
     2641 gaacgccatt gcacgcgcag ctaccgccct ggtcagcagt ggacaaaccc tgttcattga
     2701 tgccggcacg accaccgcca tcctggctga agaactcgcc aagctggcca acctgaccat
     2761 catcacgaac tcaatagatg ttgcccagaa gatgcgggcg accggcgaaa agaccgagtc
     2821 aagtaacgag atcatcctgc tcggcggctc gatcagcgac cgcgcattcg ccacagtggg
     2881 cggcacgacc gtctccgaga tcctcaggta ccgcgccgac gtagccttgc tctcgcctgt
     2941 cgccatcgac caccggcacg gcgcgaccaa cttcgatcac gccgaaaccg aggtggcccg
     3001 cgccatggtc gcgcatgctg accgggtggt gatcctggcc gactacagca agatcgggca
     3061 gtgcagcagg attgcgttct gcccgatcaa tcgcgtggat acgctgatta ccaacaagaa
     3121 aggcgccgaa ggtccggcgc tgttgtcatt gcgcaagaag ttgccgcaag tcattctcgc
     3181 ctagcgtttt agacgctgtc gttaccgtag gtggcatcga gcacacggcg gcgcagccgc
     3241 gtgtcgcgca atgcaccggc cgcgtcgagc accgggtagg ccgtcgagca aaacagcgag
     3301 ttgaggcgct tgaggtcgct gatgatgtcg aggtgcaacg cactggtctc gatgctgcgc
     3361 gcgctctgcc cggctagccg gtccaggtgc gcatacgaat aactgcgctc gagatcgcgg
     3421 aaccgctcct tctctgccag caagcgctcg gcgctacgca ggtcgctatt aagaaatacg
     3481 ctcaggccca gttgaagatt caggatcacg cgtgagtgca ggtcctccaa ctctcccagc
     3541 ccctccggcg aaaacgccag ccggtgcgta atcttcttct ccagaatgtt ggtcaccacc
     3601 cgttcgagga tgtcgcccgc atgctccagg ttgatcgtca acgtaatgat gtcggtccag
     3661 cggcggctat ccgcctcgtc gagttgctcg cgtgagatgc gcgccagata ggtctttaca
     3721 gcggcataga gctgatcgac atcgtcgtcc atgcggatgg tcgagcgtgc cttgaccggg
     3781 tcgttggccc gcatcaggtc gagcaggttg tcgagcatcg tgcggatgat gtcgccgatc
     3841 cgcagcgctt cgcgcgcggc gttcgccagc gcgagcgtgg gtgtggagag cgcgacgggg
     3901 tcaagataca gaggccgcag ttccgggttt
//
LOCUS       DATGBK010001570         5068 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_203736, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001570 DATGBK010000000
VERSION     DATGBK010001570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5068
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203736"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..781)
                     /locus_tag="VKJ77_21900"
     CDS             complement(<1..781)
                     /locus_tag="VKJ77_21900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008158933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HMC47984.1"
                     /translation="MNLNLDDLIDTVADTLQQHYPTHRWAQFALGMLTLVLAALFAQW
                     VVARIVLYVAHRLLVLTERQAWDKALARHRAYHQLWYAVPFAAVAIGIGDVPHIGHMA
                     DVIERLAHAGAWICVFFAMGGALSAWQDVYAASMQAQTRSIKGYIQIGKLALALICGV
                     LVLSIVIDRSPLWMLSGLGALSAVLLLVFKDTLLSLVASTQLTSNDMLRIGDWIEMPQ
                     SNADGFVKDIALHTVKVQNWDNTVTTVPTYKLFSESYRNYRQ"
     gene            955..1176
                     /locus_tag="VKJ77_21905"
     CDS             955..1176
                     /locus_tag="VKJ77_21905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47985.1"
                     /translation="MRTVKLEHNDDTVLDPADPQLVIRGSLLLDGHECGGWEQRRDGT
                     WIARLSRSGETVVATSRENLIERLTLVPL"
     gene            1193..1570
                     /gene="crcB"
                     /locus_tag="VKJ77_21910"
     CDS             1193..1570
                     /gene="crcB"
                     /locus_tag="VKJ77_21910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HMC47986.1"
                     /translation="MYLSILAVGIGGALGSLFRWVLGLRLNAVFPNLPLGTLAANVIA
                     GYVIGLAVAWFARFPGVSMEWRLFVITGLMGGLSTFSTFSAEVVAHLQQGRYGWAAGE
                     IAIHVTASVVMTILGIATVSLTR"
     gene            1638..2060
                     /locus_tag="VKJ77_21915"
     CDS             1638..2060
                     /locus_tag="VKJ77_21915"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC47987.1"
                     /translation="MSVFLRSVRGVASRDYDAGQIAAWAQVDRDVWSYRRLDRPTWVA
                     LIDDVIAGFIDLESSGHIDMLFVDPACQRRGVASALLDTVENAAHVQRLAVLDTDASI
                     TARPFFEKHGFRVVRSQDVALRGQRLTNFRMEKRFGAV"
     gene            2182..3741
                     /gene="hutH"
                     /locus_tag="VKJ77_21920"
     CDS             2182..3741
                     /gene="hutH"
                     /locus_tag="VKJ77_21920"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006410768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004397 - histidine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HMC47988.1"
                     /translation="MIELTPGHLTLAHLRRIARGSDALTLDPASFAAIDASAKTVADI
                     AAKGEPAYGINTGFGRLASTHIPADQLELLQRNLVLSHAVGVGEPMSRPVVRLLIALK
                     VSSLGRGHSGIRREVINALITLFNADVLPVIPVKGSVGASGDLAPLAHMSTALLGIGE
                     VTIRGERASALDGLRVAGLEPLTLQAKEGLALLNGTQASTALALYNMFAIEDLYRTGL
                     VSGALSVDAAMGSVVPFDARIHSLRGHAGQIDAAAAYRTLLEGSAINLSHQDCDKVQD
                     PYSLRCQPQVMGACLDQMRHAANVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAF
                     AADNLAIAAAEIGALAERRIALLIDATLSGLPPFLVRDGGVNSGFMIAHVTAAALASE
                     NKTYAHPASVDSLPTSANQEDHVSMATFAARKLGYIAENVAHILAIELLAAAQGVDLR
                     APHQTSPRLAEVMKTLRSEVAHYDLDHYFAPDIEAIAKQVVSGEIAKHCPLSFVSETQ
                     PHVQPDATRPA"
     gene            3738..4433
                     /gene="hutC"
                     /locus_tag="VKJ77_21925"
     CDS             3738..4433
                     /gene="hutC"
                     /locus_tag="VKJ77_21925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine utilization repressor"
                     /protein_id="HMC47989.1"
                     /translation="MNTPAYQEIKDHILTRIHAGEWKEGDQVPSENELARDFKVARMT
                     VNRALRELTAEQILTRVQGAGTFVAQPKYASTLVEIRSISDEITGRGHVHRAEVMHLG
                     ASVLDERLALEMQLTEGSPVFHSRVLHFENDLPIQLEERWVNPALAPEYARQDFTKIT
                     PNQYLMVAAPLQRVEYRIEAALPDESTGLALAMKAGEPCLMLHRRTWSRDAVASVANL
                     WHPGDRYQFTGHF"
     gene            4780..>5068
                     /locus_tag="VKJ77_21930"
     CDS             4780..>5068
                     /locus_tag="VKJ77_21930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4148 domain-containing protein"
                     /protein_id="HMC47990.1"
                     /translation="MFKSLIPAVVIVSALAAPTFAFAQSTDNNGPLTRAEVKAQLVQL
                     EKAGYNPTADQTDYPANIQAAQARVDAQNGQAATSYGPSTSGTSAMGVRSSA"
BASE COUNT          964 a         1529 c         1533 g         1042 t
ORIGIN      
        1 tctgccgata gtttctataa ctctccgaga acagcttgta cgtgggcacg gtcgtgacag
       61 tgttgtccca gttctgcacc ttcacggtat gcagcgcgat gtccttcacg aaaccatcgg
      121 cgttcgattg cggcatttcg atccagtcgc ctatgcgcag catgtcattc gaggtgagct
      181 gtgtgctcgc caccagcgac agcaacgtgt ccttgaacac gagcagcagg acggccgaca
      241 gcgcgccgag cccggacagc atccagagcg gcgagcggtc gatgacaata gacagcacca
      301 gcacgccgca tatcaacgcg agcgcgagct tgccgatctg gatgtagcct ttgattgagc
      361 gcgtctgcgc ttgcatgctg gccgcgtaga cgtcttgcca tgcgctgagc gcgccgccca
      421 tcgcgaagaa cacgcagatc catgcgccag cgtgcgcgag ccgctcgatc acgtccgcca
      481 tgtggccgat gtgcggcacg tcgccgatac caatcgccac cgccgcgaac ggtacggcgt
      541 accaaagctg gtgatacgcg cgatgccggg cgagcgcctt gtcccacgcc tggcgttcgg
      601 tcagcacgag cagacggtgg gcgacataca gcacgatgcg cgcgaccacc cactgcgcga
      661 acagcgcggc cagcacgagt gtcagcatgc cgagtgcgaa ttgcgcccag cggtgggtgg
      721 ggtagtgctg ctgcagggtg tctgcaacag tgtctatcag gtcgtccaga ttcaaattca
      781 tgcgggcagt gtgaaacata agaaggcgaa cttgactaca acaaacgaag cgacccgtat
      841 tgtgcatgaa aggcggcgct gtgctttctt gcattctcgt attctgtaca gggttcctgg
      901 tgcgctccat tatgattacg gcttcatgca ttcccgcgcg cgagcgcaaa gcccatgcga
      961 accgtcaagc tggaacacaa cgacgacacc gttctcgatc ccgccgatcc ccaactggtg
     1021 atacgcggct ccctgctgct ggacggtcat gaatgcggcg ggtgggagca gcggcgcgac
     1081 ggcacgtgga tcgcgcggct ttcgaggtcc ggcgagacgg tcgtcgccac cagccgtgaa
     1141 aatctcatcg agcgcctgac gctcgttcct ctctgacctt cattgttccc tcatgtatct
     1201 gtcgattctg gctgtaggta ttggtggcgc actcggttcc ctgtttcgat gggtgctcgg
     1261 gctgcgcctg aacgcggtgt tccccaatct cccgctcggg acgctggctg cgaacgttat
     1321 tgcgggctat gtgatcgggt tggcggtagc gtggttcgcg cgcttccccg gggtgtcgat
     1381 ggaatggcgg ctgttcgtca ttaccggctt gatgggcggc ctgtccacct tctcgacgtt
     1441 ctcggccgaa gtcgtcgcgc atttgcagca ggggcgctac ggttgggcgg cgggcgaaat
     1501 tgcgatccac gtgacggcat cggtcgtgat gaccatcctg ggcatcgcga cggtctcgct
     1561 cacgcgctaa agaatccgtg cattcgtcga tgcaacccgg catccggcgt tatgaagctg
     1621 ccgatctgga ggcggttatg agcgtgtttc tccgctcggt gcggggagtg gcgtcccgtg
     1681 attacgatgc gggccagatc gcggcatggg cgcaagtgga ccgcgatgtc tggtcgtatc
     1741 gccgacttga ccggcctacg tgggtcgcac tgatcgacga tgtcattgca ggtttcatcg
     1801 acctggaaag cagcggacac atcgacatgc tgttcgtcga tccggcctgc cagcgcaggg
     1861 gcgtggcgag cgcgctgctt gatacggtgg aaaacgcggc gcacgtgcaa cggctcgcgg
     1921 tcctcgatac cgacgccagc attaccgcgc ggccgttctt cgagaagcac ggctttcggg
     1981 tcgtgcgctc acaagatgtg gcgctgcgtg gccagcggtt gacgaacttc cgtatggaga
     2041 aacgatttgg cgctgtatag acaaccgatc taaaaaatag ctggtacgac ccctgaaaac
     2101 gccaattagg tgttttcagg ccttgttttg ggggatttgt ttgtttagac tgggccgcaa
     2161 cttgtataga caggacttgc gatgatcgaa ttgacccccg gccacctcac gctggcgcac
     2221 ctgcgccgga tcgcccgcgg ctccgacgcc ttaaccctcg atccggccag cttcgctgcc
     2281 atcgacgcct ccgcgaaaac cgttgccgac attgccgcca agggcgagcc ggcctacggc
     2341 atcaacacgg gtttcggccg tctggcgagc acccacattc ccgccgatca gctcgaactg
     2401 ttgcagcgca atctggtgtt gtcgcatgcg gtgggcgtag gcgaacccat gtcgcgcccg
     2461 gtcgtgcgtt tgctgatcgc gttgaaggtg tcgagcctgg gacgcgggca ttcgggcatc
     2521 cgccgcgagg tgatcaacgc tctgattacg ctttttaacg ccgatgtcct gccagttatc
     2581 ccggtcaagg ggtcggtggg cgcatcgggc gatctggcgc cgctcgcgca tatgtcgacg
     2641 gcgttgctcg gtattggcga agtcaccatt cgtggagagc gggcgagtgc gctggacggg
     2701 ctgcgcgttg ccggcctcga gccgctgacg ctccaggcta aagaaggcct cgcgctgctc
     2761 aatggcacgc aggcttccac ggcgctcgcg ttgtacaaca tgttcgcgat cgaagacctg
     2821 taccgcacgg ggctggtgtc gggcgcgttg tcggtggatg ccgcgatggg ttctgtcgtt
     2881 cccttcgacg cccgcattca ctcgctgcgc ggtcacgccg gacagatcga tgcggcggct
     2941 gcctatcgca ccttgctgga aggttccgcg atcaatttgt cgcatcagga ttgcgacaag
     3001 gttcaggacc cgtacagcct gcgttgccag ccgcaagtca tgggcgcgtg ccttgaccaa
     3061 atgcgccatg cggccaatgt cttgctgatc gaagcgaatg ccgtatcgga caacccgctg
     3121 atcttccctg acaccggcga agtactctcg ggcggtaact ttcacgcaga acccgttgcg
     3181 ttcgccgccg ataacctcgc gatcgctgcc gcggaaattg gtgcgctggc ggaacgccgg
     3241 atcgcattgc tgatcgatgc gacgctctcc ggtttgccac cgtttctcgt tcgcgatggc
     3301 ggcgtgaatt cgggcttcat gatcgcgcat gtgactgctg cggcgcttgc ctcggagaac
     3361 aagacctacg cgcatccggc atcggttgat tcgctgccga catcggcgaa tcaggaagat
     3421 cacgtctcca tggcgacgtt cgccgcccgc aaacttggct acatcgcgga gaacgtagcg
     3481 catattctcg ctatcgagtt gctcgcggcc gcacaaggcg tggaccttcg cgcaccgcat
     3541 caaaccagcc cgcgcctcgc cgaagtgatg aagacgctgc gctctgaagt cgcgcattac
     3601 gatctcgatc attatttcgc accggatatc gaggcgatcg cgaagcaggt ggtcagcggc
     3661 gaaatcgcga aacattgccc gctttcgttt gtttcggaaa ctcaacccca cgttcaaccg
     3721 gacgctaccc gcccagcatg aacacgcccg cgtatcagga aatcaaggat cacattctca
     3781 cgcgcattca tgcgggggaa tggaaggaag gcgaccaggt gccttccgaa aacgaactgg
     3841 cgcgcgattt caaggtggcg cgcatgacgg tcaatcgcgc gctgcgcgaa ctgaccgccg
     3901 aacagatcct gacacgcgtg cagggcgcgg gaacgttcgt ggcgcagccg aaatacgcat
     3961 ctacgctcgt tgaaattcgc agcatctccg acgaaatcac cgggcgtggt catgtgcatc
     4021 gggcagaagt gatgcacttg ggcgcgtccg tactggacga acgtctcgcg ctcgaaatgc
     4081 aactcaccga gggcagcccg gtgtttcatt cgcgggtgct gcacttcgaa aacgacctgc
     4141 cgatccagtt ggaagagcgc tgggtcaatc ccgcgcttgc gccggaatat gcgcgccagg
     4201 atttcaccaa gatcacgccg aatcagtacc tgatggtcgc cgcgcctttg cagcgcgttg
     4261 aatatcggat tgaagcggcg ctccccgatg agagcacggg cctcgcgctc gccatgaaag
     4321 ccggcgagcc gtgcctcatg ctgcatcggc ggacgtggtc gcgggacgcg gtggcgtcag
     4381 tggcgaacct ctggcatccc ggcgatcgat atcaattcac gggtcatttc taggcccatt
     4441 ctggtccgtt accctgcgcc gaaccctccc cgggttcgga tcgaattctt gtggaaactg
     4501 caatacagcc cactgcagcg cgggccattc cccgagttca aaagcgttcc tgcgccttcc
     4561 tcagtaacaa attccgaatt tcccggccca attccacttt gccggccatt tcggcgcgat
     4621 tgttgcgatc tcaacaatga tgtttcgcgt aaatcagggt tttccctcaa ggtttcgaag
     4681 catagacttc ttacatccga aacaaattca gaaaacgctt atttccctct gactctgaga
     4741 ttgtttcgag accacaaaca aaatactgga ggtatcacca tgttcaagtc acttattccc
     4801 gcagttgtta tcgtgtcggc attggcagct ccgacgttcg cgtttgcgca aagcactgac
     4861 aacaacggcc cgctgacgcg tgctgaagtg aaggcgcaac tggttcaact ggaaaaggca
     4921 gggtacaacc cgaccgccga ccagaccgac tacccggcga acatccaggc agctcaggcc
     4981 cgtgttgatg cacaaaatgg tcaggcagcg acgtcatatg gtccttcgac cagcggcacc
     5041 tcggcaatgg gcgttcgtag ctcggcgg
//
LOCUS       DATGBK010001571         5710 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_180069, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001571 DATGBK010000000
VERSION     DATGBK010001571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5710
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180069"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1040
                     /locus_tag="VKJ77_21935"
     CDS             <1..1040
                     /locus_tag="VKJ77_21935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010109321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminomethyltransferase family protein"
                     /protein_id="HMC47991.1"
                     /translation="TRTSVGILDASTLGKIDIQGPDAAKLLNWVYTNPWSKLEVGKCR
                     YGLMLDENGMIFDDGVTVRLADQHYMMTTTTGGAARVLTWLERWLQTEWPDMRVRLAS
                     VTDHWATFAVVGPNSRKVLQKVCRDIDFANAAFPFMSYREGTVAGAASRVMRISFSGE
                     LAYEVNVPANVGRAVWEALMAAGAEFDITPYGTETMHVLRAEKGYIIVGQDTDGSMTP
                     YDLGMGGLVAKSKDFLGKRSLTRSDTAKAGRKQLVGLLAEDASFVIPEGSQIVPGPFT
                     GDTAPMLGHVTSSYFSPILKRSIAMAVIKGGLDKIGESVMIPLAGGKQMPAKITSSVF
                     YDSEGARQHVE"
     gene            1030..1680
                     /locus_tag="VKJ77_21940"
     CDS             1030..1680
                     /locus_tag="VKJ77_21940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sarcosine oxidase subunit gamma"
                     /protein_id="HMC47992.1"
                     /translation="MWNENRSNQTVVDRAIGQGGWQESPLVGVDGLLKKHQASASKAF
                     RLVERPFLELVNLRGDLRDAAFVAAVESVIGCKPPEKPNTTATGNGYDLMWLGPDEWL
                     VRSAASHSATQAAPMEARLREAFKGLFAAAVDIGSGYTVLEISGTRTRDVLARGCPLD
                     LHPRLFGVGQCAQSHYFKASVTVLPTGDDSFDLVVRRSFADYFVKMMLDAAEPLMS"
     gene            1677..2135
                     /locus_tag="VKJ77_21945"
     CDS             1677..2135
                     /locus_tag="VKJ77_21945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HMC47993.1"
                     /translation="MKPYEPFETLSPGGRGWRIVVDELVVPTRIGLYAQEHLAPQPVA
                     IDASLHYRGVPAEENTHELIDYEAWCEGVSGYLESKPHTRLLETLAVEIAALSFTQWP
                     ALDALTLLLYKPKIREGTRRVGVELDWHRADFDAWRASAGLQTARTTVTR"
     gene            2143..2406
                     /locus_tag="VKJ77_21950"
     CDS             2143..2406
                     /locus_tag="VKJ77_21950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC47994.1"
                     /translation="MTSTRVQTAGLSQLACEQHDPEAALALLDRSVALGHRRIALIRY
                     LHAQYLGAPLEPHHHEYVHKVAERLSTETIARIAMAARARLEG"
     gene            complement(2503..4191)
                     /gene="betA"
                     /locus_tag="VKJ77_21955"
     CDS             complement(2503..4191)
                     /gene="betA"
                     /locus_tag="VKJ77_21955"
                     /EC_number="1.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008812 - choline dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0019285 - glycine betaine biosynthetic
                     process from choline [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="choline dehydrogenase"
                     /protein_id="HMC47995.1"
                     /translation="MSANEFDYIVVGAGSAGNVLASRLTEDPDVTVLLLEAGGPDYRF
                     DFRTQMPAALAFPLQGRRYNWAYETDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRG
                     NALDYDGWAERKGLENWTYSNCLPYFRKAETRDAGPNQYHGGDGPVHVTTSKPGNNPL
                     FAAMVEAGVQAGYPRTDDLNGYSQEGFGPMDRTVTPKGRRSSTARGYLDRAKGRPNLT
                     IVTHAVTDRVLFAGKKAIGVAYLHSGERVTAHVRREVLVCSGAIASPQLLQRSGVGRS
                     TWLRELDVPLVHDLPGVGENLQDHLEMYMQYECLEPVSLYPALQWWNQPQIGLEWMLN
                     GTGIGASNQFEAGGFIRTRDDDLWPNIQYHFLPVAINYNGSNPIKMHGFQAHVGSMRS
                     PSRGRIKLKSRDPNAHPSILFNYMSDPLDWREFRDAIRITREIMHQPALAKYRGRELH
                     PGADLTTDDQLDAFVKQRAETAFHPSCSCKMGYDDMAVVDTEGRVHGLESLRVVDASI
                     MPLIVTGNLNAPTIMLAEKIADKIRGREPLARVDTPYFVAHGAKARKAETLAAV"
     gene            complement(4203..5672)
                     /gene="betB"
                     /locus_tag="VKJ77_21960"
     CDS             complement(4203..5672)
                     /gene="betB"
                     /locus_tag="VKJ77_21960"
                     /EC_number="1.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004533333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008802 - betaine-aldehyde dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019285 - glycine betaine biosynthetic
                     process from choline [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="betaine-aldehyde dehydrogenase"
                     /protein_id="HMC47996.1"
                     /translation="MPVFELQRLYIGGAYVDATSGETFDTLDPATGETLASVQQASAA
                     DIDRAVRSAREGQREWASMTAMQRSRILRRAVDILRERNDELAALETRDTGKPIAETR
                     AVDIVTGADVIEYYAGLATAIEGQQIPLRPSSFVYTRREPLGVCAGIGAWNYPIQIAC
                     WKSAPALAAGNAMIFKPSEITPLSTLKLAEIYTEAGVPAGVFNVVQGDGRVGALLAAH
                     PDIAKISFTGGVETGKKVMSMAGGSSLKEVTMELGGKSPLVIFDDANLERAADIAMSA
                     NFFSSGQVCTNGTRVFVQRPVYERFEALLLERVKRIRVGSPTDANTNFGPLVSAAQLR
                     KVLGFIESGKQEGARLITGGSRIVHDAFAQGQYVEPTVFTDCRDDMRIVREEIFGPVM
                     SILVFDEESEVIERANATEYGLAAGVVTENLARAHRVIHALQAGICWINTWGESTAEM
                     PVGGYKQSGVGRENGITTLEHYTSIKSVQVELGPYQPVF"
BASE COUNT         1069 a         1689 c         1813 g         1139 t
ORIGIN      
        1 caacgcgcac gagcgttggc attctcgatg catcgacgct cggcaagatc gacattcagg
       61 gtcccgatgc cgcgaagctg ctcaactggg tctacacgaa cccgtggagc aagctggaag
      121 taggcaagtg ccgatacggc ctgatgctcg acgaaaacgg catgatcttc gatgacggcg
      181 tgaccgtgcg cctggccgac cagcactaca tgatgacgac cacgaccggc ggcgcggcac
      241 gcgtgctgac gtggctcgag cgctggctgc aaaccgagtg gcccgacatg cgggtgcggt
      301 tggcatcggt aacggatcac tgggctacgt ttgcggtcgt tggcccgaac agccggaagg
      361 tgctgcagaa ggtctgccgc gatatcgact tcgccaatgc tgctttcccg ttcatgagtt
      421 atcgcgaagg taccgtggcg ggcgcggcgt cgcgtgtgat gcggatcagc ttctcaggtg
      481 agctcgctta cgaggtcaac gtgccggcta acgtcggacg tgctgtgtgg gaggcgctga
      541 tggccgccgg tgccgaattc gacatcacgc cgtacggcac ggaaaccatg cacgtgctgc
      601 gggcagagaa gggttacatc atcgtcggtc aggataccga tggttcgatg acaccgtacg
      661 accttggcat gggcggactg gtcgcgaaat cgaaggactt cctcggcaag cgttcgctga
      721 cgcgctcgga tacggcaaag gcggggcgca agcaacttgt cggcttgctc gcggaagatg
      781 cgtcgttcgt gattccggaa ggctcgcaga tcgtgccggg tccgttcacg ggcgacacgg
      841 cgccgatgct cggccacgtc acatccagct atttcagccc tattttgaag cgctcgatcg
      901 cgatggccgt catcaagggc ggtctcgaca agatcggcga gtcggtgatg attccgctcg
      961 cgggcggcaa acagatgccg gcaaaaatca ccagctcggt gttctacgac agcgaaggag
     1021 cacgtcaaca tgtggaatga aaacagaagc aaccaaacgg tcgtggatcg cgcaatcggg
     1081 cagggcgggt ggcaggaatc gccgctggtg ggtgtggatg gcctgctgaa gaaacatcag
     1141 gcgagtgcat cgaaggcgtt tcgtcttgtc gagcggccgt tcctggaact ggtcaatctg
     1201 cgtggcgacc tgcgcgacgc cgcgttcgtt gcggcggtag aaagcgtgat tggctgcaag
     1261 ccgccggaga agccgaatac gacggcaacg ggcaacggct acgacctgat gtggctcggt
     1321 cccgacgagt ggctggtgcg ctcggccgcc tcgcattccg cgacacaggc tgcgccgatg
     1381 gaagccagat tgcgcgaggc gttcaaggga ttattcgcag ccgcggtcga tatcggcagc
     1441 ggttacaccg tgctcgaaat cagcggcacg cgtacgcgtg atgtactcgc gcgcggttgt
     1501 ccgctcgacc tgcatccgcg gttgttcggc gttggccagt gtgcgcagag ccattacttc
     1561 aaggcctccg tgacggtgct gccgactggc gacgatagct tcgacctcgt ggtccgccgt
     1621 agctttgcgg actacttcgt gaagatgatg ctcgatgcgg ccgagccgct gatgtcgtga
     1681 aaccgtacga accattcgaa acattaagcc cgggcggccg cgggtggcgc attgttgtcg
     1741 atgagctcgt ggtgcctacg cgcattggtt tgtatgctca ggagcatctg gcgccgcagc
     1801 ccgttgccat tgatgcgagc ctgcattatc gaggcgtgcc ggccgaggag aacacgcacg
     1861 agctgatcga ttacgaggct tggtgcgagg gggtgtctgg ctatctggag agcaagccgc
     1921 atacgcgctt gctcgaaacg ctggcggtgg agatagcggc gctgtcgttc acgcaatggc
     1981 ccgcgctcga tgcgctgacg ctgctgctgt ataagccgaa gattcgcgaa ggcacgcgac
     2041 gcgtgggcgt tgagctcgac tggcatcgtg cggatttcga tgcatggcgt gcgtcggctg
     2101 gattgcagac ggcgcgtacg acggtcactc gctgaaacgg ccatgacgtc gacgcgcgtt
     2161 caaaccgccg gcctttcgca gcttgcctgc gaacagcatg atcctgaggc ggcgctcgcg
     2221 ttgctcgatc gcagcgtggc gcttgggcat cggcgaattg cgttgatccg ctatctgcat
     2281 gcgcagtacc tcggtgcgcc actcgagccg caccatcacg agtatgttca caaggtggcg
     2341 gagcgcttaa gcaccgagac gattgcgcgc atagcgatgg ctgcgcgtgc ccggcttgag
     2401 gggtgacctg gcctccacgg tcacagtcga ttcagcagat tgaaacggaa aagggcatcg
     2461 cggccgctaa gccgggatgc ccgaacatgc ggtactaacc aattacacag ccgcgagtgt
     2521 ctccgcctta cgcgccttcg caccatgcgc gacgaaatac ggcgtatcaa cacgggccag
     2581 tggctcacgc ccccggatct tgtccgcgat cttttcggcc agcataatcg ttggcgcatt
     2641 caggttgccg gtcacgatca gcggcatgat cgacgcgtcc accacgcgaa gcgattcgag
     2701 cccgtgcacg cggccttcag tgtcgactac ggccatgtcg tcgtaaccca tcttgcacga
     2761 gcatgaggga tggaatgccg tctccgcacg ttgcttcacg aacgcgtcga gttgatcgtc
     2821 tgtagttagg tcggcgcccg gatgcaactc ccgtccacga tatttcgcga gcgccggctg
     2881 atgcatgatc tcgcgcgtga tgcggatcgc gtcgcggaat tcacgccagt cgagcgggtc
     2941 cgacatgtaa ttaaacagga tgctcgggtg cgcgttcgga tcgcgtgact tcagcttgat
     3001 gcgaccgcgg ctgggggacc gcatggaacc cacatgcgcc tggaagccgt gcatcttgat
     3061 cgggttagag ccgttgtagt tgatggcgac gggcaggaag tgatattgaa tgttgggcca
     3121 caggtcgtcg tcgcgcgtgc gtataaaacc gcccgcctcg aactgattgc tcgcaccaat
     3181 gcccgtaccg ttcaacatcc attcaagtcc gatctgcggc tggttccacc actgcagcgc
     3241 aggatagagc gacacgggct caaggcattc gtattgcatg tacatctcca gatggtcctg
     3301 gagattctca ccgacgcccg gcagatcgtg gactaaaggg acgtcgagtt cccgcagcca
     3361 tgtcgatcgg ccgacccccg aacgctgcag taattgcggc gatgcaatcg caccactgca
     3421 cacgagaacc tcgcgacgta catgagcggt gacacgttcg ccactgtgca aatacgccac
     3481 gccaatggct tttttcccgg cgaacaagac gcgatccgtg acggcatgcg tcacgatcgt
     3541 gagattcggc cggcctttcg cgcggtcgag atatccgcgt gcggtgctgg agcggcggcc
     3601 ctttggcgtc acggtccggt ccatcgggcc gaaaccttcc tggctgtaac cgttgaggtc
     3661 atccgtacgg ggataacctg cctgcacacc ggcttcgacc atcgcggcaa acaaaggatt
     3721 gttgccgggc ttggaagtcg tcacatgcac cggaccgtca ccgccgtgat actggttcgg
     3781 tccggcatcg cgcgtttcgg ccttgcgaaa atacggcagg caattggaat aggtccagtt
     3841 ttcaaggcct tttctctccg cccaaccgtc gtagtcaagc gcattgccgc ggatatagca
     3901 catgccgttg attagcgacg atccgccgag tcccttgccg cggccgcatt ccatgcggcg
     3961 attgttcatg tggggttcgg gatcggtttc gtaggcccag ttatagcgcc ttccttgcag
     4021 cggaaacgcc agcgcggccg gcatctgcgt gcggaagtcg aagcgatagt ccggaccgcc
     4081 cgcttcaagc agcagcacgg tcacgtcagg gtcttcggtg agacgggagg cgagcacgtt
     4141 gcctgccgaa cctgcgccca cgacgatgta gtcgaactcg ttcgcgctca tcgaatcgct
     4201 ccttagaata cgggttggta gggacccagc tcgacctgca cggacttgat gctcgtgtag
     4261 tgctcaagcg tggtgatgcc gttttcgcgg cctacgcccg attgcttgta tccgcccaca
     4321 ggcatttcag cggtcgattc gccccacgta ttgatccagc agatgccggc ttgcagcgca
     4381 tgaattacgc gatgcgcccg cgccagattc tccgtgacta cgcccgcggc gaggccgtat
     4441 tcggtggcgt tggcacgttc gatcacttcg ctttcctcat cgaatacgag gatgctcatg
     4501 acggggccaa aaatctcttc gcggacaatg cgcatgtcgt cgcggcaatc ggtgaagacg
     4561 gttggttcga cgtactgtcc ttgagcgaat gcgtcatgca cgatccgcga tccaccagtg
     4621 atcaaccgcg caccttcttg tttaccgctt tcgatgaagc caaggacctt ccgcaattgc
     4681 gcggcgctca cgagcgggcc gaagttggtg ttggcgtccg ttggcgagcc cacgcgaatg
     4741 cgcttgaccc gctccagcaa gagcgcttcg aagcgctcgt acaccggtcg ctggacgaac
     4801 acgcgcgtgc cgttcgtaca cacctggccg gagctgaaga agttggcgct cattgcaatg
     4861 tcggcggcgc gttcgagatt ggcatcgtcg aaaatgacga gcggggattt gccgcccagt
     4921 tccatcgtga cttctttcag cgatgaaccg ccagccatcg acatcacttt cttgcccgtc
     4981 tccacaccgc ccgtaaacga gatcttcgcg atgtccggat gcgcggcaag cagcgcgccc
     5041 acacgaccat cgccctgcac gacgttaaac acgccagcgg ggacgccggc ttcggtgtag
     5101 atttcagcga gtttcaacgt gctgagcggc gtgatttcgc tgggcttgaa gatcatcgcg
     5161 ttgccggcgg cgagggcggg ggccgacttc cagcaggcga tctggatcgg ataattccac
     5221 gcaccaattc ccgcgcacac gccaagcggt tcgcgccgcg tatagacaaa cgagcttggc
     5281 cgcaacggaa tctgctggcc ttctatggcc gttgcaagcc cggcgtagta ttcaatgaca
     5341 tcggcgccgg tgacaatatc gacggctcgg gtttcggcaa tcggcttgcc cgtgtcgcgg
     5401 gtttcgagcg ctgcgagttc gtcgttgcgt tcgcgcagga tatccaccgc gcgacgcagg
     5461 atgcgcgagc gttgcattgc ggtcatgctg gcccattcgc gctgcccttc gcgagccgag
     5521 cgcacggcgc gatcaatatc cgctgcgctc gcctgctgca cgctcgcgag cgtttcgccc
     5581 gtggcgggat cgagcgtgtc aaaggtttcg ccgctggtgg cgtcgacgta agcgccgccg
     5641 atgtacaagc gctgcaattc gaatacgggc atggcgaagt cctttaagtg agggttcgac
     5701 cgcgtgtgtc
//
LOCUS       DATGBK010001572         1964 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_18067, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001572 DATGBK010000000
VERSION     DATGBK010001572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18067"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..945)
                     /locus_tag="VKJ77_21965"
     CDS             complement(<1..945)
                     /locus_tag="VKJ77_21965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011829349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC47997.1"
                     /translation="MNYATGVGDGRDANGAGRDGDAVLSVAHLATELAGSAGVVHAVN
                     GVDFTIARGETFAIVGESGCGKSMTALSILRLLPETGQIVAGSVNVGGTELLSLPEAA
                     MRNVRGRRIAMIFQEPATSLNPVLTIERQIGEVLLRHTALRGVAVRTRAIELLDAVGI
                     PDPATRIDDYPFQLSGGMKQRVMIAIALAAEPDLLIADEPTTALDVTIQAQVLELLRE
                     LQRKNGMSILLITHDLGVVAQMAHRVAVMYCGEFVEFAPRDQFFGAPQHPYTRKLFEA
                     LPGAGKRGTELSVMRGQVPSLAEALVGCAFADRCDFVMP"
     gene            complement(942..>1964)
                     /locus_tag="VKJ77_21970"
     CDS             complement(942..>1964)
                     /locus_tag="VKJ77_21970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017525174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC47998.1"
                     /translation="GAHLASEDDNARDIALRLLLGGGLGGAMWLALALLVVAGQARRA
                     GSNLVAAWRAVWSGRTRVAWRGALGAAMPLLVLGFSAAALSAGYHVLGTDKVGLDVLY
                     LSLKSIRTGLMIGALTTLVMLPFAVMLGIMAGYFKGWVDDVIQYVYTTLNSIPGVLLI
                     AAAVLMMQVYIDTHPDLFPTSAQRADLRLLFLCIILGLTNWTGLARLLRGETLKLREL
                     DFIQAAQAFGVGHHRIITRHVLPNVMHLVIITLVMDFSGLVLAEAVLSYVGVGVDPSM
                     ISFGTMINAARLEIAREPMVWWVLVAAFIFMFVLVLAANLFADAVRDAFDPRVRVGSL
                     PAGAAA"
BASE COUNT          395 a          652 c          611 g          306 t
ORIGIN      
        1 tggcatgacg aaatcgcagc gatcggcaaa ggcgcagccc accagcgctt cggcgagcga
       61 gggcacctgc ccgcgcatta ccgatagttc ggtaccgcgc ttgccggcgc cgggaagcgc
      121 ttcgaacaac ttgcgcgtgt aggggtgctg tggcgcgccg aagaactgat cacgcggcgc
      181 aaattccacg aactcaccgc aatacatcac cgcgacccgg tgcgccattt gcgcaaccac
      241 gcccaggtcg tgcgtgatga gcaggatcga catgccgttc ttgcgctgca gctcgcgcag
      301 cagttctagc acctgcgcct gaatggttac atcgagcgcg gtcgtcggct cgtcggcgat
      361 gaggaggtcg ggttcggcgg cgagggcgat cgcgatcatt acccgctgct tcatgccgcc
      421 ggagagctgg aacggataat catcgatgcg cgttgccggg tccggaatgc cgacggcgtc
      481 cagcagttcg attgcgcgtg tgcgcacggc aacgccgcgc agcgccgtgt gacgcagcag
      541 cacttcccca atttgtcttt cgatggtaag cactgggttg aggctcgtcg ccggttcctg
      601 gaagatcatc gcaatgcgcc gcccgcgaac gttgcgcatc gccgcttccg ggagcgaaag
      661 caactcggtg ccaccgacgt tcacactgcc ggccacgatt tggcccgttt ccggcagcag
      721 ccgaaggatc gacagcgccg tcatcgactt tccgcatccc gactcgccga cgatcgcaaa
      781 tgtctcgcct cttgcgatcg tgaagtcaac gccgttcacc gcgtgcacga cccctgcgct
      841 tcccgccaac tcggtggcaa gatgcgcgac cgaaagcacg gcgtcaccgt cgcggccggc
      901 gccattcgcg tcgcggccgt cgccgacgcc tgtggcgtaa ttcatgccgc cgcgccggcg
      961 ggtaaacttc ccacccgaac gcgcgggtcg aatgcgtcgc gaacggcatc ggcgaacagg
     1021 ttcgccgcaa gcaccagcac gaacatgaag atgaaagcgg cgaccaacac ccaccacacc
     1081 atcggttcgc gcgcaatctc aaggcgcgcc gcattgatca tcgtgccgaa gctgatcatc
     1141 gacggatcga ccccgacccc gacgtaggag agcaccgcct ccgccaacac cagaccagag
     1201 aaatccatta ccagcgtgat aatcaccagg tgcatgacgt tgggcagcac atgtcgggtg
     1261 atgatacggt ggtggccgac gccgaacgcc tgcgccgcct ggatgaaatc gagttcgcgc
     1321 agtttaagcg tctcgccgcg cagcaaacgc gcgagcccgg tccagttggt caagccgagg
     1381 atgatgcaca gaaacagcag tcgcagatcg gcgcgctggg cggaggtcgg gaacaggtcc
     1441 gggtgagtat cgatgtagac ctgcatcatc agcacggccg cggcgatgag gagcacgccc
     1501 ggtatggaat tgagtgtggt gtacacgtac tggatcacgt catcgaccca ccctttgaag
     1561 tagccggcca tgatgccgag catcaccgca aacggcagca tcaccagcgt cgtcagcgcg
     1621 ccgatcatca gaccggtacg tatgcttttg agcgaaaggt agagcacgtc cagtccgacc
     1681 ttgtcggtgc cgagcacgtg atagcccgcg gaaagcgcgg ccgcggaaaa gccgagaacg
     1741 agaagcggca tggcagcgcc gagcgcgccg cgccaagcaa cccgcgtgcg tccgctccag
     1801 actgcgcgcc aagcggcgac caagttcgaa ccggcgcgcc ttgcctgccc ggccaccaca
     1861 agcagcgcaa gcgccagcca catcgcgccg ccgagcccgc cgcccaggag cagacgcagc
     1921 gcaatgtcgc gtgcgttgtc gtcttcgctt gcaagatgcg cccc
//
LOCUS       DATGBK010001573         3781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_18088, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001573 DATGBK010000000
VERSION     DATGBK010001573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3781
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18088"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..170)
                     /locus_tag="VKJ77_21975"
     CDS             complement(<1..170)
                     /locus_tag="VKJ77_21975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-interacting protein"
                     /protein_id="HMC47999.1"
                     /translation="MQNRPDLAVGRVRHQLKFRLAQVKRVQPLTPHLVRITLSGDDLH
                     DFESASFDDHIKV"
     gene            complement(194..904)
                     /locus_tag="VKJ77_21980"
     CDS             complement(194..904)
                     /locus_tag="VKJ77_21980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HMC48000.1"
                     /translation="MRHHRNREFARPEAGFESSDRFSMHALWHAIGRHHHRHDDDGRF
                     PGGPGGFGGRGDDGMPRGRKFTSDDLQLLLLALLAEAPRHGYELIKALEVRSNGFYSP
                     SPGMVYPALTYLEELGYATVEVEGNRKRYALAEPGRNYLTTNRERVDLMLAKLSHFAR
                     KMDSVRRAFAGEATDENADTNGDSNAWLPEFIQARRALKHALLIRTDAPASEQRRIAA
                     ILARATAEIEGKTAGDPA"
     gene            1181..2176
                     /locus_tag="VKJ77_21985"
     CDS             1181..2176
                     /locus_tag="VKJ77_21985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48001.1"
                     /translation="MDGSDVFAGRRRVLRLLGAAPAVAALGGFGSQEARAADAALGSV
                     TLVLGDQAGGTRALAEAAKVLDGTPYAFKWANFQGAAPLFEAQRAGAVDLAPAGDLPV
                     LAAAVGDPTLKIVATRVGSGSQLGILVPADSKLRSVAELKGRTVFVSSARGSISQFQL
                     YGALAEAGLSREDVSVRFVLPVDAFTAFESGSIDVWATFDPYFGTAVQRGARVLRDGT
                     GINSGLGFVTASGTAAADPLKRLAIADVLQRLQRAGDWAIANPDAYARVYSSLTRLPF
                     DAAKTITARSALKQRFVADNDIVALQRVADIAFRDTILPRRIDVRAISDTQIAKT"
     gene            complement(2261..3070)
                     /locus_tag="VKJ77_21990"
     CDS             complement(2261..3070)
                     /locus_tag="VKJ77_21990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007747621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HMC48002.1"
                     /translation="MSTLTDAPGLTLHATPVRKFWFDEVPAPATPAAERRHRLERLAG
                     AFRLFARHGFDQGLAGHITARDPEWPDHFWVNPLGRHFARMRVSDLLLVNSTGEIVVG
                     KGPVNQAAFAIHAAIHEARPDIVAAAHTHSLYGKAWSTLGRKLDPLTQDSCSFYEDHE
                     LFDDFQGVVLDTKEGARIAEALGSSKAVILKNHGILTAGPTVEAAAWWYLALDNACHT
                     QLLAEAAGTPQRIPHDVAALTHERVGRPGGALFSFESLYEGLVEAEPDLLD"
     gene            complement(3290..>3781)
                     /locus_tag="VKJ77_21995"
     CDS             complement(3290..>3781)
                     /locus_tag="VKJ77_21995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013689344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HMC48003.1"
                     /translation="LPEAQALIPTMGRLPGVDGKAKMSKSQNNSIALSSSPDVIREAV
                     KRMYTDPNHLRASDPGTVEGNMVFTYLDVFDDDRAEVERLKAAYRAGGLGDMALKHRL
                     EDKLQALIAPIRERREQFAQDPGYVFSVLREGTQRAKAVTQQTLDEVRMALGTFSFES
                     ISA"
BASE COUNT          682 a         1076 c         1207 g          816 t
ORIGIN      
        1 accttgatgt ggtcgtcgaa ggacgcggat tcaaagtcgt ggagatcgtc gccgcttaac
       61 gtgatgcgca ccaagtgggg cgtaagcggt tgaacgcgct tgacttgagc caggcggaat
      121 ttaagttgat ggcggacgcg gccgaccgcc agatcgggtc tgttttgcat agtgtgttct
      181 cttaagtatt gattcatgcc ggatcgccag cggttttccc ttcgatctcg gccgtcgcac
      241 gcgcaaggat ggcggcaatg cggcgttgct cgctagcggg cgcgtcggtt cggatcagca
      301 acgcgtgctt gagggcgcgg cgtgcctgaa tgaactcggg cagccatgcg ttgctgtcgc
      361 cgttagtgtc cgcgttttca tcggttgctt cgcctgcaaa tgcgcggcgc actgaatcca
      421 tcttgcgagc gaaatggctt agcttggcca gcatcaggtc gacgcgctcg cggttagtcg
      481 tcaggtaatt gcggccgggt tcggctaacg cataacgctt gcgattgcct tccacttcaa
      541 ccgttgcata gcccagttct tccaggtaag tcagcgccgg atagaccatg cccggactcg
      601 ggctgtaaaa accgttcgag cgaacttcga gcgccttgat cagctcgtag ccatggcgcg
      661 gtgcttcggc cagaagggcg agcaggagca actggaggtc gtcggaggtg aacttgcggc
      721 cgcgcggcat gccgtcgtca ccgcggccgc cgaatcctcc cgggccgcct ggaaagcggc
      781 cgtcgtcgtc atggcggtgg tggtggcgac cgattgcatg ccacagcgcg tgcatggaaa
      841 aacggtctga agattcaaat ccagcttcgg ggcgagcgaa ctcgcgattt cggtgatgtc
      901 tcattgtgaa actccgtgat tatcgtaaaa cagatcttaa gatatatatc ttaagatacg
      961 ttgtcaatat ttttcggagg gatgagtgga gggcggccgc ggcgtcgcgc tctagcggat
     1021 accccagacc cacatgcgtc gccacgggct cgacctgctg tgctgaaacc tgcaatgctt
     1081 aagtatccgg cggtcataac catatcggaa ttgaataatt ctcaaggggg cgcggcgtcg
     1141 ctactctggg cgctgatttc gcccgcgagg atttatgcag atggatggtt ctgatgtttt
     1201 cgctggacgg cggcgcgtat tgcgcttgct gggcgccgcg ccggctgttg ctgcgctagg
     1261 cggtttcggg tcgcaggagg cgagggcagc ggacgcggcc ctgggttccg tcacgctggt
     1321 gctgggtgat caggcgggcg gcacgcgcgc gctggccgag gcggccaagg tgctcgacgg
     1381 cacgccgtat gccttcaagt gggctaattt ccagggtgct gcgccgctct ttgaagcgca
     1441 gcgcgcgggt gccgtcgact tggcgcctgc tggcgatttg cctgtgctgg cggcagccgt
     1501 tggcgatccg acactcaaga tcgttgcgac acgcgttggc tcgggctcgc agttgggcat
     1561 cctcgtcccg gcagattcga agctgcgcag cgtggcggag ctcaagggac gtacggtgtt
     1621 tgtttcgtcg gcacgtggca gcatttcgca gttccagctc tatggcgcgc tggcagaagc
     1681 cggcctttcg cgcgaggacg tttcagtgcg gtttgtattg ccggtcgatg cgttcaccgc
     1741 gtttgaatcg ggaagtatcg atgtatgggc gaccttcgat ccgtacttcg ggaccgcagt
     1801 tcaacggggt gcgcgggtgc tgcgggatgg gaccgggatc aatagcggtc tgggctttgt
     1861 tacggcgtcc ggtaccgcag cggccgatcc actgaagcgc cttgctatag cagatgtgct
     1921 gcagcgtttg cagcgcgcgg gtgattgggc aatcgccaat cccgacgcgt atgcgcgtgt
     1981 ctactcgtca ttaacgcgcc ttcctttcga tgccgccaag accattaccg cgcgatcagc
     2041 gctgaagcaa cgctttgtcg ccgacaacga tattgtcgcg ttgcagcggg ttgcggatat
     2101 cgcttttcgc gatacgatcc tgccgagaag gatagatgtg cgcgccatct cggacacgca
     2161 gatcgccaag acttgacggc gatcaggtgg ttaaggcgat gtgtgatgca gcgccttaac
     2221 cattcagcac tcagcactca atgccgtttc acgtttcaaa tcaatcaagc agatcgggtt
     2281 cggcttcgac caggccttca tacaagctct cgaacgaaaa cagcgcgcct cccgggcggc
     2341 cgacccgctc gtgcgtcagc gctgccacgt catgcggaat gcgctgaggc gtaccggccg
     2401 cttcggcgag tagttgcgtg tggcacgcgt tatccagcgc gagataccac catgcagctg
     2461 cttctaccgt cggacccgcg gtcaggatgc catgattctt caggatcacc gctttgctcg
     2521 aacccagcgc ttcggcaatc cgcgcgcctt ccttggtgtc gagcaccacg ccctggaaat
     2581 catcgaatag ttcgtgatcc tcatagaatg agcaagaatc ctgcgtgagc ggatcaagct
     2641 tgcgtccaag ggtcgaccag gctttcccgt acagagaatg cgtatgcgca gccgcgacaa
     2701 tatccggacg agcttcgtga atggccgcgt gaatcgcaaa cgcggcctga ttgaccggcc
     2761 ccttgccgac gacgatctcg ccggtgctgt tcaccagcag caagtcggac acccgcatgc
     2821 gtgcgaagtg ccgcccaagc ggattgaccc agaaatgatc gggccattcg ggatcgcgcg
     2881 cagtgatatg tccggccagg ccttgatcga aaccgtgacg ggcgaacagc cgaaatgcgc
     2941 cggcaagccg ctccaggcga tgccggcgtt cggctgcggg cgttgccgga gccgggactt
     3001 cgtcgaacca gaatttgcgg acgggcgtgg cgtgcagggt gaggccgggc gcgtcggtga
     3061 gggtgctcat tgtcttgatg tcctttggcg ttcaaacggc gttctgactc gtcccgatga
     3121 gcttgtgccg ccagcggcca aggctagtcc ggcgagtatc cccggtgcga acgggttgag
     3181 ggttcaatcg atcgacaccg gtgaacagtc tcaaaggcta gcacccgggc cggcaaagct
     3241 taaatatcaa atgaagataa ccatatcgat cgtgcatggg tggtgcctcc taagcgctta
     3301 tcgattcaaa cgaaaacgtc cctagcgcca tccgtacttc atcaagcgtt tgctgcgtga
     3361 cagccttggc gcgttgcgtg ccctccctaa gcacactaaa gacgtatccc gggtcctggg
     3421 cgaattgttc ccgccgttcc cgtatagggg cgatcagcgc ctgcagcttg tcttccaacc
     3481 ggtgcttgag ggccatgtcg ccaagccctc ctgcgcgata cgccgccttc aggcgttcca
     3541 cttcggcgcg gtcgtcgtcg aatacgtcca ggtacgtaaa gaccatgttg ccctccacgg
     3601 ttcccgggtc agatgcacgc agatggtttg gatcggtgta catgcgtttc acggcttcgc
     3661 gtatgacgtc gggcgaggac gaaagcgcga tcgagttgtt ttgcgatttg ctcatcttgg
     3721 ctttgccgtc gacgccgggg aggcggccca ttgtcgggat caatgcctgg gcttccggca
     3781 g
//
LOCUS       DATGBK010001574         2679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_319180, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001574 DATGBK010000000
VERSION     DATGBK010001574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319180"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VKJ77_22000"
     CDS             complement(<1..516)
                     /locus_tag="VKJ77_22000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007590315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp/Glu racemase"
                     /protein_id="HMC48004.1"
                     /translation="MSTIPLQDDLYVKLDFALDDGICRRAAIGLVVLATDHTIEHEWR
                     RLLTQDGVAFYESRVLNSPDITPERLVEMEDRIAPAVALIRPGERIDVVAFGCTSASM
                     VIGEENVFARIHDARPGVACTTPITAALAALHALGVQRAGLLTPYVRSINDYMRDYIE
                     ARGVSITRMVSF"
     gene            complement(513..1757)
                     /locus_tag="VKJ77_22005"
     CDS             complement(513..1757)
                     /locus_tag="VKJ77_22005"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008718 - D-amino-acid dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0055130 - D-alanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HMC48005.1"
                     /translation="MKSVVLGGGIAGVTAAYYLAKEGREVTVIDRQPGVALETSFANA
                     GLVAPGHSYTWASPRAPKILLKSLFVDGQALRLKLNADPRMWIWCFQFLQNCTAERSR
                     QNTTRKVRLCRYAQSQLQQLTAAEHLEYDSISRGLLYLYRDEAAFARGTQNMSILADN
                     GLPLETLDAAQVAAREPALAPARDKIAGAIYCPTDESGDAHLFTRALKAVCESLGVRF
                     EFNAPISAIEASGDQVRGVRTPAGLVQGDEFVLALGSWSPIVARSLGYRLPVYPVKGY
                     SATFPIGPNHRPPTLGGVDENNLVAWARFGQRLRFTATAEFAGYDTRHTPADFTQMLQ
                     AARDLFPNGADYDSPSYWAGLRPMTPEGTPLIGRTRHRNLYLNTGHGHMGWTMSCGTA
                     KLLVDIMAGRQPELDMTGMTLK"
     gene            2196..>2679
                     /locus_tag="VKJ77_22010"
     CDS             2196..>2679
                     /locus_tag="VKJ77_22010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC48006.1"
                     /translation="MQGQTIKIGVPVPLSGSSANAGTDIVNGAKLAAAKINTAGGVLG
                     KQIEIVPEDDACDAQTAVQAAQKLVDAGVVAVAGGYCSSAALPELTTFHRAGIAYVLD
                     ASTNPKLTEMGYDNVFRTIGRDDEQGPFAASFMKNSLHAKRAAVINDNTTYSKGLADN
                     T"
BASE COUNT          547 a          824 c          799 g          509 t
ORIGIN      
        1 gaacgacacc atgcgcgtaa tgctgacgcc acgggcctcg atatagtcgc gcatatagtc
       61 gttgatcgag cgcacatagg gcgtcaacag tccggcgcgc tgaacaccta gtgcgtgtag
      121 cgcggcaagc gcggcggtaa tcggcgtggt gcacgcgacg cccggacgcg catcatggat
      181 gcgcgcgaat acgttttcct cgccgatcac catcgatgcc gacgtgcagc caaacgccac
      241 gacatcgatc cgctctccgg gacgaatcag tgcgaccgct ggtgcaatgc ggtcctccat
      301 ttccaccagc cgttcaggcg tgatgtcggg tgagttgagc acgcggcttt cgtagaacgc
      361 cacgccgtcc tgcgtcagca gacgccgcca ctcgtgttcg atcgtatgat cggtagcgag
      421 caccacgagg ccaatggcgg cacgccggca aataccgtcg tccagcgcga aatcgagctt
      481 tacgtacagg tcgtcctgca atggaatcgt gctcatttca gtgtcatccc tgtcatgtca
      541 agttcgggct gtcgaccagc catgatgtcg accagcagct tcgcagtgcc acaagacatc
      601 gtccatccca tgtgtccgtg gccggtgttc agatacaggt tcctgtgacg cgtgcggcca
      661 atcaacggcg tcccctcggg cgtcatcggg cgcagacccg cccagtacga cgggctgtca
      721 tagtcggcgc cattcgggaa caagtcgcgc gcggcctgca gcatctgcgt gaagtcagcg
      781 ggcgtgtggc gagtgtcata accagcgaac tcggcagtcg cggtgaagcg cagccgttgg
      841 ccaaaacgcg cccatgccac gagattgttt tcatcgacgc cacccagcgt cggcggacga
      901 tgattcggcc caatagggaa cgtggccgaa taacccttga ccggatacac cggaagccga
      961 tagcccaatg aacgcgccac gatgggcgac caggagccga gcgcgaggac gaactcgtcg
     1021 ccttgcacga gtcccgccgg agtgcgcact ccccttacct ggtcgccgga cgcctcgatc
     1081 gcgctgatcg gagcattgaa ttcgaaacgt acgccaaggg attcgcacac cgccttcaga
     1141 gcgcgggtga acaagtgcgc atcgccgctt tcgtcagtcg ggcaataaat cgcgccggcg
     1201 atcttgtcac gcgcgggcgc aagcgccggc tcccgcgcgg ccacttgcgc cgcatcgagc
     1261 gtttcgagcg gcaacccgtt gtccgcgagg atcgacatgt tctgcgtgcc tcgcgcgaaa
     1321 gcagcttcgt cgcgatagag atacaacaag ccgcggctga tgctgtcgta ttccaggtgt
     1381 tcggccgcgg tgagttgctg caattgactc tgtgcgtacc ggcaaagcct taccttgcgc
     1441 gtcgtattct gacgcgagcg ctccgccgtg cagttttgca ggaactggaa gcaccagatc
     1501 cacatgcgag ggtccgcgtt gagcttgagt cgcagcgcct gcccgtcaac gaagagtgac
     1561 ttcagcagaa ttttcggcgc acgcggagac gcccacgtat acgaatgccc cggagcgacc
     1621 agaccggcgt tggcaaagct ggtctcaagc gcaacgcctg gctgacgatc gattaccgtc
     1681 acttcgcggc cttccttcgc aaggtaatag gccgccgtga cgcccgcgat tccgcccccc
     1741 agcacgacgc ttttcatgcg cgactcccgt gtgtgtcgac cagagttagc gctttagcgc
     1801 ttactctggt cccatgcaaa gctgcttgtc tttcaaacat acgatgtcgt cgatattttt
     1861 gcatggtaat ttatacgcag ataccctata cggtccaaat gtgaggctag acctatcatg
     1921 aaaggagtgc tttcatgatt gcgcggcgat gagacccgag agtcaggcta cctgtctgcc
     1981 aagtgctgac gtgcatgcga acgtaagttt tcagttgtct tctgacgcca ccggcgaacc
     2041 cgtgtggcgg atcgttccga tccctttcac aataaggagt cactaacatg attgctcaga
     2101 acaatgacac gtccggcgct gatcgcgtct tgcggaaaac gacactggcg gcaatcgtcg
     2161 cgctggctgc gctcgcgggc atggcccccg gtttggtgca aggccagacc atcaagatcg
     2221 gcgtgccggt gccgctgtcg ggcagcagtg ccaacgccgg aaccgacatc gtcaatggcg
     2281 ccaagcttgc cgccgccaaa atcaatacgg ccggcggcgt tctcggcaag caaatcgaaa
     2341 tagtgccgga ggatgacgcc tgcgacgcgc agacggcggt gcaggcagcg cagaaactgg
     2401 ttgatgcggg ggtcgtcgcg gtggccggcg gttattgctc cagcgcggcg ctaccggaac
     2461 tgacgacgtt tcatcgcgcc gggattgcct acgtactgga tgcatcgacc aatcccaaac
     2521 tcaccgaaat gggctatgac aacgtgttcc gcacaatcgg ccgtgacgac gagcagggtc
     2581 cgtttgcagc cagtttcatg aagaattcgc tgcatgcaaa gcgggcggcc gtcatcaatg
     2641 acaacacgac ctattccaag ggcctggccg acaacaccg
//
LOCUS       DATGBK010001575         2090 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_273554, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001575 DATGBK010000000
VERSION     DATGBK010001575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273554"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VKJ77_22015"
     CDS             <1..639
                     /locus_tag="VKJ77_22015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HMC48007.1"
                     /translation="VLSTRLIRDFPEYYSIFSVKDFTYNKIKQPNRNRLLWIDSSVDG
                     LKTGHTKAAGYCLIATAKRPLDGVPDASRRLVAVMMGEPKEHNRVQDSLKMLNYGYTA
                     YDALRLYKAGQVIESPRVYKGTENLVKAGVETDQYITVPKGMGDKVKPTVTHNDTIVA
                     PIKKGQQVGTVKMMADGKEVAQFPLVALQDVPQAGFVGRTWDSLLMMWQKKK"
     gene            766..1038
                     /locus_tag="VKJ77_22020"
     CDS             766..1038
                     /locus_tag="VKJ77_22020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 family protein"
                     /protein_id="HMC48008.1"
                     /translation="MSSPDIDALFDFPCDFPIKVMGATHPEFRDAVVTVIREFDDEFD
                     IERIEVRPSSGGKYTGLTITVRAQSRAHLDDIYRALTGHPMVKVVL"
     gene            complement(1022..2002)
                     /locus_tag="VKJ77_22025"
     CDS             complement(1022..2002)
                     /locus_tag="VKJ77_22025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HMC48009.1"
                     /translation="MDLRQLPALNALRAFEAAARHESFSRAADELFVTHGAVSHQIRA
                     LEADLGVTLFVRDGKRVRLSDIGRQYATEVRTTLSALADATRRLRSGERDRRLVVSML
                     SSFSARWVTPRIGGFIEEHPEINLELLSTNTLTDFTRDDVDVAIRFSSLGKYAGLHAE
                     ELLDEVFFPACSPNFNGGKLPRTPADLADTPLLRSHDELWKPWFDAAGLVDLAEPKRG
                     VLYEDSSNLLQAAIQGQGIALVRRSLAMQEIVAGRLVRLFNIDGPSPWNYYFVCPPAL
                     LGTQRVQHFRSWLFDEIARFKQLYECTPAACDAPMRPPRSPPELRLKAPL"
BASE COUNT          435 a          579 c          674 g          402 t
ORIGIN      
        1 gtgttgtcca cgcgcctgat tcgcgatttt cccgagtact acagcatttt ctcggtgaag
       61 gatttcacct ataacaagat caagcagccg aaccgcaatc gcttgctgtg gattgattcg
      121 tccgtcgacg gcttgaagac cggccatacc aaagccgctg gatattgcct gatcgccacg
      181 gcgaagcgtc cgctggacgg tgtacccgac gccagccgcc gtctggtcgc ggtgatgatg
      241 ggcgagccga aagagcacaa ccgggtgcag gacagcctga aaatgctgaa ctacggctat
      301 acggcctatg acgcgctgcg cctgtacaag gcgggtcagg tgattgagtc gccgcgtgtc
      361 tacaagggca cggaaaacct ggtgaaggcg ggcgtggaga cggatcagta cattaccgtg
      421 ccgaagggca tgggcgacaa ggtcaagccc accgtcacgc ataacgacac tatcgttgcg
      481 ccgatcaaga agggtcagca ggtcgggacc gtgaagatga tggcggacgg caaggaagtt
      541 gcgcagtttc cgctggtcgc attgcaggac gtaccgcaag ccggttttgt cggccggacg
      601 tgggactcgc tgctgatgat gtggcaaaag aagaagtaag cggacgaagt tagctgaaga
      661 agtaagcggc aaggcagggc ggcggttgga attgtgtgat ccggctccat ctatgcctgc
      721 tgtacgacgc ccgggtggac cgggcgtcct gtgatggaga acaccatgag ctcacccgat
      781 atcgacgccc tgttcgattt cccctgcgat tttccgatca aggtgatggg cgcgacgcat
      841 ccggaattcc gcgatgccgt cgtgaccgtg atccgcgaat ttgacgacga gtttgacatc
      901 gagcgtattg aagtgcgtcc gtcgtcgggc ggcaaataca ctggcctgac cattactgtg
      961 cgggcgcaaa gccgcgcaca tctcgacgat atctatcgtg cgctgaccgg tcatccgatg
     1021 gtcaaagtgg tgctttgagc ctgagctcag gcgggctccg gggcggccgc atgggagcat
     1081 cgcatgcggc cggcgtgcac tcatagagct gcttgaagcg cgcaatttca tcgaagagcc
     1141 agctgcgaaa gtgttgcacg cgctgcgttc cgagcaacgc gggcgggcac acgaagtagt
     1201 aattccacgg gctcggtccg tcgatgttga acagccgcac gagccggccc gccacgattt
     1261 cctgcatggc aagcgaccgg cgcacgagcg cgatcccctg gccttgaatg gccgcctgca
     1321 gcaaattcga cgaatcctcg tataaaaccc cccgctttgg ctcagcaagg tcgacaagtc
     1381 cggcggcatc gaaccatggt ttccacagct cgtcgtgcga gcgaagcagc ggcgtgtcgg
     1441 ccaggtcggc gggcgtgcgc ggcagcttgc caccgttaaa gttcggcgaa cacgccggga
     1501 aaaacacttc atcgagcaat tcttccgcat gcaatccggc atatttgccc aggctgctga
     1561 aacggatggc gacgtccacg tcgtcgcgcg tgaaatcggt cagtgtgttg gtcgagagca
     1621 gttcgaggtt gatttccgga tgctcctcga taaaaccgcc aatccgcggt gtcacccaac
     1681 gcgctgaaaa cgacgacagc atcgacacta ccagccgcct gtcccgttcg ccggagcgca
     1741 ggcggcgcgt ggcgtcggcg agggcggaga gcgtggtgcg aacctcggtg gcgtattggc
     1801 ggccaatgtc cgagaggcgg acgcgtttgc cgtcgcgaac gaatagcgtg acgccgagat
     1861 cggcttcgag cgctcggatc tggtggctga cggcaccatg ggtgacgaag agttcgtcgg
     1921 cggcgcgtga aaagctttcg tgacgcgcag cggcttcgaa ggcgcgcaac gcgttgaggg
     1981 cggggagttg tcggaggtcc acgggcgttc actcgagttg tctatgtgaa tttatctcac
     2041 aaaccgaaga aaattgctcg ttttgcttaa acgtatgctg agcctatctt
//
LOCUS       DATGBK010001576         1872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_203814, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001576 DATGBK010000000
VERSION     DATGBK010001576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203814"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VKJ77_22030"
     CDS             complement(<1..225)
                     /locus_tag="VKJ77_22030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/substrate symporter small subunit"
                     /protein_id="HMC48010.1"
                     /translation="MSSIPPPASSPAEPPPVTAAMARAHRLYWRTNLVLISVLMLIGF
                     LVSFGIPLMATRLAHVRFAGFPLPFYFGAQG"
     gene            complement(352..>1872)
                     /gene="acs"
                     /locus_tag="VKJ77_22035"
     CDS             complement(352..>1872)
                     /gene="acs"
                     /locus_tag="VKJ77_22035"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HMC48011.1"
                     /translation="MQACARIGATHSVVFGGFSSKSLNERLVDVGAVALITADEQMRG
                     GKALPLKSIADEAIAAGGCDAVTSVIVYKRTGGKTQWHEGRDLWMHELVEHESDQCEP
                     EWVSAEHPLFILYTSGSTGKPKGVQHSTGGFLLWAAQTMKWTFDAKPDDIFWCTADIG
                     WITGHSYIAYGPTAIGATQIVFEGVPTYPNAGRFWDMIAKHKVTIFYTAPTAIRSLIK
                     MAEADAKVHPKSFDLSSLRILGTVGEPINPEAWMWYHENVGRGVCPIVDTWWQTETGG
                     HMITPLPGATPLVPGSCTLPLPGIMAAVVDETGQDVPNGQGGILVIKRPWPSALRNVW
                     GDPDRYKKSYFPEELGGKLYLAGDGAVRDKETGYFTIMGRIDDVLNVSGHRLGTMEIE
                     SALVSNPIVAEAAVVGRPDDTTGEAVCAFVVLKRSRPEGDEAKQIANDLRAWVAKEIG
                     PIAKPKDIRFGENLPKTRSGKIMRRLLRSLAKGEEITQDISTLENPAILDQLGEAR"
BASE COUNT          370 a          606 c          540 g          356 t
ORIGIN      
        1 gccctgagcg ccaaagtaaa acggcagagg aaaacccgcg aaacgcacgt gagcgagccg
       61 cgttgccatg agcggaatgc cgaacgacac taagaagccg atcagcatca gcaccgagat
      121 cagcacaaga ttcgttcgcc agtacaaccg atgcgcacgc gccatcgcgg ccgtgacggg
      181 cggtggttcg gcaggactcg aagcaggcgg tggaatcgag gacatgtgct tatctaccaa
      241 atgctttgag aagcggcaat cgggatcgac atcgtgcgcc gactcgctat ataaaaacgg
      301 ctccctgaaa cagggagccg ttctttcaag ccaaatgata ctagagcaaa ttcaacgcgc
      361 ttcgccgagt tgatccagga tcgcgggatt ctcgagcgtc gagatgtcct gcgtgatctc
      421 ctcgcccttt gccagtgagc gcagcaaccg cctcatgatc ttgcccgaac gggtcttggg
      481 gagattctcg ccgaaacgga tgtccttcgg tttcgcgatc ggaccgatct ccttggcgac
      541 ccacgcgcgc aggtcattgg cgatctgctt cgcttcgtcg ccttccggac gcgagcgctt
      601 cagcacgacg aatgcgcaca ccgcttcgcc ggtcgtatcg tcgggacgac caaccacggc
      661 cgcttccgcc acgatcggat tcgacaccag cgccgactcg atctccatgg tccccaaccg
      721 atgccccgag acgttcagca cgtcatcgat ccggcccatg atcgtgaagt aacccgtctc
      781 cttgtcgcgc acggcgccgt cgcctgcgag gtacaacttg ccgccgagtt cctcagggaa
      841 gtagctcttc ttgtagcggt ccggatcgcc ccaaacgttg cgcaacgccg aaggccacgg
      901 ccgcttgata accaggatcc cgccctgccc gttcggcacg tcctgaccgg tttcatcgac
      961 gacagccgcc atgatgcccg gcagcggcag cgtgcaggag cccggcacaa gcggcgttgc
     1021 gcccggcagc ggcgtgatca tgtggccgcc ggtttcggtc tgccaccacg tatcgacgat
     1081 aggacaaacg ccgcggccca cgttctcgtg ataccacatc cacgcttccg gattgatcgg
     1141 ctcgccgacc gtgccgagaa tgcgcagcga cgacagatcg aagctcttcg gatgcacttt
     1201 tgcatcggct tcggccatct tgatgagtga acggatagcg gtcggcgcgg tgtagaaaat
     1261 cgtgaccttg tgcttcgcga tcatgtccca gaagcgcccg gcgttcggat aggtcggcac
     1321 gccttcgaac acgatctggg tcgcaccaat agcggtcgga ccgtacgcga tatagctatg
     1381 ccccgtgatc cagccaatgt cggcggtaca ccagaatatg tcgtcaggct tggcgtcgaa
     1441 ggtccacttc atggtctgtg ctgcccacag caaaaagccg ccggtgctgt gctgcacgcc
     1501 cttcggtttg cccgtggaac cggacgtgta caggatgaac agcggatgtt cggcactgac
     1561 ccattccggc tcgcactgat cggactcatg ctcgaccagc tcgtgcatcc agaggtcgcg
     1621 gccttcatgc cattgcgtct tgccacccgt gcgcttgtac acgatcacgc tcgtgaccgc
     1681 gtcgcaacct ccggctgcaa tagcttcatc ggcgatgctt ttcagcggca gcgccttgcc
     1741 gccgcgcatt tgttcgtcgg cggtaatgag cgcgactgcg cccacgtcca cgagccgttc
     1801 gttgagcgac ttcgatgaaa acccgccgaa caccaccgaa tgcgtggcgc cgattcgcgc
     1861 gcaagcctgc at
//
LOCUS       DATGBK010001577         5252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_227185, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001577 DATGBK010000000
VERSION     DATGBK010001577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5252
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227185"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1087
                     /locus_tag="VKJ77_22040"
     CDS             <1..1087
                     /locus_tag="VKJ77_22040"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC48012.1"
                     /translation="SVLSHELKNPLNLIHVKAELLTRIPDVRDISSVQDAADAIRRAV
                     AGQAKIIDDLLDLSRVRAGKLALRFAPVEIASVLQGVVAASVADAQAGDIELSVAGAD
                     AAVMIHADAERVEQMIWNLVRNALKFTPHGGRVRIALSRQGGFVCVEVADTGQGIDPG
                     FLPRIFEMFSQADGGGRRDRGGLGIGLSLVKQLAELHGGRIEAESAGQGQGARFRLWL
                     PENAPSLPVETPREYVDPGILRGLRVLLVDDSIEALEAFRTLLEMEGALVRAESSAEQ
                     ALEAAAHQEFDVVLSDIGMPAMDGYEMIQQMRKTPRTARLPALALTGFGREQDVTRAL
                     AAGFNGHLSKPVSLKGLVAAIAQSLRG"
     gene            complement(1706..3175)
                     /gene="rng"
                     /locus_tag="VKJ77_22045"
     CDS             complement(1706..3175)
                     /gene="rng"
                     /locus_tag="VKJ77_22045"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HMC48013.1"
                     /translation="MNEEILINVTPQETRVALVQQGAVQELHVERTLSRGRVGNVYLG
                     KVVRVLPGMQSAFIDIGLERAAFLHVADIWHPRIAGETHSNAPHTPIEKIVFEGQALM
                     VQVVKDPIGTKGARLSTQVSIAGRTLVYLPQEPHIGISQKIASEAEREAIRARLTAVL
                     PVDEKGGYIVRTIAEDASSEELAADVAYLRKTWTTIVAQAQRVAPTSLLHQDLNLAQR
                     VLRDFVNDETSRIQVDSRETYQMLADFAIEFTPAVASRVHHYAGERPLYDLYNIEAEI
                     QKALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIFDTNLEAAHTIARQ
                     LRLRNLGGIIIIDFIDMENVEHRDQVLGELKKALSRDRTRVTVNGFSQLGLVEMTRKR
                     TRESLAHVLCEPCPTCDGKGQVKTPRTVCYDVLREIMRESRQFNPREFRVVASQQVID
                     LFLEEESQHLAMLMDFIGKPVSLQVESNLSQEQYDIVLM"
     gene            complement(3183..3803)
                     /locus_tag="VKJ77_22050"
     CDS             complement(3183..3803)
                     /locus_tag="VKJ77_22050"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HMC48014.1"
                     /translation="MPSSTFPFVYLASQSPRRQELLQQLDVRFELLLPRPDEDAEALE
                     AELPGEAADAYVLRVCAAKAQAAYARRLKGGHRAAPILVADTTVTLDGAIMGKPDNAD
                     HAVEMLERLSGRDHEVLTALAVVDADGVLLTPVLSCSLVRFAAVGRAALQRYAATGEP
                     LGKAGAYGVQGRAAAFIERIEGSYSGIMGLPLFETAALLRVARVDF"
     gene            complement(3873..4343)
                     /gene="rlmH"
                     /locus_tag="VKJ77_22055"
     CDS             complement(3873..4343)
                     /gene="rlmH"
                     /locus_tag="VKJ77_22055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HMC48015.1"
                     /translation="MKLHILAVGHKMPDWIATGFDEYAKRMPPELRIELREIKPEQRS
                     SGRNAESVMAAERLRIEAALPKNARLVALDERGRDWTTMQLAGALPDWQQEGRDVAFV
                     IGGADGLDPQVKARAEVLLRVSSLTLPHGMVRVLLAEQLYRAWSITQNHPYHRA"
     gene            complement(4437..4874)
                     /gene="rsfS"
                     /locus_tag="VKJ77_22060"
     CDS             complement(4437..4874)
                     /gene="rsfS"
                     /locus_tag="VKJ77_22060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HMC48016.1"
                     /translation="MEITKLQRAIIDGLEDVKAQDIKVFNTTHLTALFDRVIVASGTS
                     NRQTKALANSVRDKVKGLGGDVISTEGEEVGEWVLVDCGDAVVHILQPALRQYYNLEE
                     VWGDKPVRVKLQSSGGFSGAQVSVSDEEDDEPAAKPARKTTRR"
     gene            complement(4891..>5252)
                     /locus_tag="VKJ77_22065"
     CDS             complement(4891..>5252)
                     /locus_tag="VKJ77_22065"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069538.1"
                     /note="catalyzes the formation of deamido-NAD(+) from
                     nicotinate ribonucleotide and ATP; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HMC48017.1"
                     /translation="SLLIGADQLVHLDSWRDWKRLFEFAHVCVETRAGFDVSTVSPAV
                     AEEIATRSAPAEVLQATPHGHLLIDSALELEVSATEIREQLGERLRAHAAGEIDAESH
                     VPSAVWDYIVHHHLYHR"
BASE COUNT         1029 a         1550 c         1594 g         1079 t
ORIGIN      
        1 ttcggtgctg tcgcatgagc tcaagaaccc gctcaacttg attcacgtga aggccgaatt
       61 gctcacgcgc atacccgatg tgcgggacat ctcaagcgtg caggatgccg ccgatgccat
      121 ccggcgcgcc gtcgcggggc aagcgaagat catcgatgac ttgctcgacc tgtcgcgtgt
      181 gcgcgccggc aagctcgcgc tccggttcgc gccggtggag atcgcgtccg tgcttcaggg
      241 ggtcgtggcc gcgagcgtgg cggatgcgca ggcgggtgat atcgagttgt cggtagcggg
      301 cgccgatgcc gctgtgatga ttcatgccga tgccgagcgc gtcgaacaga tgatctggaa
      361 tctcgtgcgc aacgcgctga agttcacgcc gcatggcggg cgggtgcgga tcgcgttatc
      421 gaggcaaggc gggtttgtgt gtgtcgaggt ggcggacacg gggcagggca tcgatcccgg
      481 cttcctgccg cgtatcttcg agatgttcag ccaggccgat ggcggcggcc gtcgtgatcg
      541 aggtggactt gggatcgggc tgtcgcttgt gaagcaactc gcggagttgc acggcgggcg
      601 tattgaagcg gagtcggcgg ggcagggaca aggagcccgc tttcggctgt ggctgccgga
      661 gaacgcgccg tcgctgcccg tggaaacacc gcgtgaatat gtcgatccgg gcatcttgag
      721 gggcctgcgc gtgttgctcg ttgatgactc catcgaagcg ttagaggcgt ttcgaacact
      781 gcttgaaatg gagggggcgc tggtgcgtgc cgagtcgagc gccgagcagg cgcttgaagc
      841 ggcggcgcat caggagttcg atgtggtgct gtccgatatc ggcatgccgg ccatggacgg
      901 ctacgagatg atccagcaga tgcgaaagac accgcggacc gcgcggttgc cggcccttgc
      961 gctcaccggg tttggacgtg agcaggatgt cactcgggcg ctcgctgccg ggtttaacgg
     1021 tcatttgagc aagccggtgt ctcttaaagg gctggtcgct gcgattgccc agagtttgcg
     1081 agggtgagag gctcgcggag gctgcgggga ttgccatact tcactatttt taagtcgctc
     1141 catttacgcg ctgttcgatt gataaatcct ggagcgaatc tagtgacagg cgcgtgcgtg
     1201 gtcgcttact cttaaagtaa caagtcttat ctgatcttag cgtcgggtga accgttatca
     1261 cgctttcaac gggatatgcc cggtctaccg aggcggttca ctggcccagg aatagggcga
     1321 tgaagaattt ggattatcgg caaacgtgaa caggcgtaac aggaaaaatg tacgacaacc
     1381 atttgtaatt ttttgcaacg caacggcggt gaatatttgg tgtcaactat gcactaggca
     1441 cagcctgttc acttcggagc caaatcatgc aagaaatctc acagtcgagc gagtccaacc
     1501 agactgtttc aactgatcaa tctccttctg ccatgttgca ccagatcgaa tccgccctga
     1561 cgtacatgat tcgttgtgcg tacacagagc aggtgcctta tgtaagcgag gatgtgattc
     1621 agctacgaca aaagatccgc gggttgataa cggtcccgcg gagtgcatcg tagtttgagg
     1681 ttggggtgaa ggaattcgta atcggttaca tcaagacaat gtcgtattgc tcctgactca
     1741 gattcgactc aacctgcagc gaaaccggtt tgccgatgaa gtccatcaac atcgccagat
     1801 gctgcgactc ttcctcgaga aacaaatcga tcacctgctg cgacgccacc acgcgaaact
     1861 cgcgtggatt gaactgacgc gactcgcgca tgatctcgcg cagcacgtcg taacacacgg
     1921 tgcgcggtgt ctttacctgg cctttgccat cgcaggttgg gcacggctcg cacaacacat
     1981 gcgcgagaga ttcgcgcgtg cgtttgcgtg tcatctcaac cagccccaac tgcgagaaac
     2041 cgttcaccgt tacccgcgtc cgatcccgcg acaacgcctt cttcaattcg ccaagcacct
     2101 gatcgcgatg ctcgacgttc tccatatcga tgaaatcgat aatgatgatc ccgccaagat
     2161 tcctcaaccg caattgccgt gcaatggtgt gcgctgcttc gagattggta tcaaagatcg
     2221 tatcgtcgaa attacgggca cctacataac cgcccgtatt cacgtcgatg gtggtcattg
     2281 cttcggtctg gtcgatcatc agataaccac ccgacttcag atcgacccgg cgtgataacg
     2341 ccttctgtat ctcggcttca atgttgtaca ggtcatagag cggccgctcg cccgcatagt
     2401 gatgcacacg ggaagccacc gccggcgtga actcgatcgc gaagtcggcc agcatttgat
     2461 acgtctcgcg cgaatcgacc tgaatacgcg atgtctcgtc gttgacgaaa tcgcgtaaca
     2521 cgcgctgtgc aagattgaga tcctgatgca gcagcgaggt tggcgcgacc ctctgcgcct
     2581 gcgcgacaat ggttgtccag gtcttgcgca aataagcgac gtcggcggcg agctcttcac
     2641 tcgatgcatc ttccgcaatc gtccggacga tatacccgcc tttttcgtca acaggaagaa
     2701 cggccgtgag ccgcgcccgg atggcctcgc gttcggcctc gctggcaatc ttctgcgaga
     2761 tcccgatatg cggctcctgc ggcagataga ccagcgttcg cccggcgata ctcacctgcg
     2821 tggaaagccg cgcacccttg gtgccgatag gatccttgac cacctgcacc atcagcgcct
     2881 gaccttcgaa cacgatcttc tcgatcggcg tatgcggcgc gttcgaatgc gtttcgccgg
     2941 caatacgcgg atgccagata tccgccacgt gcaggaacgc tgcgcgctca agcccgatat
     3001 cgataaaagc cgactgcatg ccaggcagca cgcgcacgac cttgccgaga tacacattgc
     3061 ctacccgtcc gcgagacaac gtgcgctcga cgtgaagctc ttgcaccgcg ccttgctgaa
     3121 cgagggcaac gcgggtttcc tgcggtgtga cgttgatgag aatttcttcg ttcatggact
     3181 gtttagaagt cgacgcgcgc cacgcgcagg agtgctgctg tttcgaaaag aggcaggccc
     3241 atgatacccg aataggaccc ctcgatccgt tcgataaacg ccgccgcacg tccctgaacg
     3301 ccatatgcac cggcctttcc gagcggttct cccgtggccg cgtaacgctg cagtgcagca
     3361 cgcccgacgg cggcgaagcg cacgagcgaa catgacagaa caggcgtgag cagaacgccg
     3421 tcggcgtcga ccacggcgag cgctgtcagc acctcgtgat cgcgcccgga tagacgttcg
     3481 agcatctcga cggcatggtc ggcgttgtcg ggcttgccca tgatcgcgcc atccagggtg
     3541 acggtcgtat cggcgacgag aatgggcgcc gcgcgatgac cgcctttcaa gcggcgagcg
     3601 tatgccgctt gcgcctttgc cgcgcatacg cgcaacacgt acgcgtcagc cgcctcgccg
     3661 ggcaattcgg cttcgagcgc ttcggcgtct tcatcgggac gcggcagcag caactcgaag
     3721 cgaacatcga gttgctgcaa aagttcttgc cgccggggac tttgcgacgc gagataaaca
     3781 aaagggaagg tggacgatgg catgttcgcg gatattgaag gtcacgcgcc ggctagcccc
     3841 aagcgtggtt gttcaacgcc ccgatgccac gcctacgcgc gatgataggg atgattctgc
     3901 gtgatgctcc acgcgcgata aagctgttcg gccagcagca cgcggaccat gccgtgcggc
     3961 agcgtgagac ttgaaacacg cagcaggact tcggcacgcg ccttgacctg cgggtcgaga
     4021 ccgtcggcac cgccgatcac gaacgccaca tcccggcctt cctgctgcca gtccggcaat
     4081 gcgccggcaa gttgcatggt agtccagtca cggccgcgtt catcaagcgc gacaagccgc
     4141 gcattcttgg gcagcgccgc ctcgattcgc aggcgttcgg cggccatcac gctctcggcg
     4201 ttacgtcccg atgaacgctg ttcgggtttg atctcgcgta actcgatgcg cagctcgggc
     4261 ggcatgcgtt tcgcatactc gtcgaagccg gtcgcgatcc agtcgggcat cttgtggccg
     4321 accgcaagga tatgaagttt catggcgaca tggcaaagcg cttcacgcgc actacgtccg
     4381 cactaagccc gcgcttttac cacgacggac agtgcgacgt acgggtgcgg ccagcgtcag
     4441 cggcgcgtgg tcttgcgagc tggcttcgcg gccggctcgt cgtcttcttc gtccgacacg
     4501 ctcacctggg cgccgctgaa gccaccagag ctttgcagct ttacgcgcac gggtttatcg
     4561 ccccagactt cctcgaggtt gtagtactgg cgcagcgccg gttggaggat atggacgaca
     4621 gcgtcgccgc aatcgaccag cacccactcg ccgacctctt cgccttcggt gctgatgacg
     4681 tcgccgccca gccccttgac cttgtcgcgc acgctgttgg cgagcgcctt ggtctgacga
     4741 ttcgacgtgc cgctcgcgac gatgacacgg tcgaagaggg cggtcaggtg ggtggtgttg
     4801 aacaccttga tgtcctgcgc cttgacgtct tcgagaccgt cgatgatcgc gcgttgaagc
     4861 tttgtgattt ccatattttt accgatggtt ttaccgatga tacaagtggt gatgaacaat
     4921 atagtcccat acggcggacg gtacatgact ctcggcgtct atctcacccg ccgcgtgcgc
     4981 ccgtagccgt tcgcccaact gctcgcggat ttccgtagcg gacacttcaa gctccagcgc
     5041 cgaatcgatc agcagatgac cgtgcggcgt ggcctggagc acttcagccg gggcgctgcg
     5101 cgtggcaatt tcctcggcca ccgcgggaga aaccgttgag acgtcaaatc ctgcgcgggt
     5161 ttccacgcac acgtgcgcaa attcaaacag gcgtttccag tcgcgccatg aatccaggtg
     5221 cacgagctgg tcggcgccga tcaaaagcga ca
//
LOCUS       DATGBK010001578         1969 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_180204, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001578 DATGBK010000000
VERSION     DATGBK010001578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1969)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1969)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1969
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180204"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..126)
                     /locus_tag="VKJ77_22070"
     CDS             complement(<1..126)
                     /locus_tag="VKJ77_22070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006465585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48018.1"
                     /translation="MRRFDWDSLQAFLAVARAGRLTVAAQQMGVDHSTLSRRVASL"
     gene            288..1667
                     /locus_tag="VKJ77_22075"
     CDS             288..1667
                     /locus_tag="VKJ77_22075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAF domain-containing protein"
                     /protein_id="HMC48019.1"
                     /translation="MSLIAKLEARAQAGRPVRVGLIGAGKFGSMYLSQAPRTPGIHLV
                     GIADLSPARARSAVQRVGWEEARYSARSWAEALRSGSTFITDDADAMIASDHVDIVID
                     ATGSPIAGIHHALLCCKYKKHIVMVNVEADVLAGPLLARRAAEAGIIYSMASGDQPAL
                     IAELVDWARTIGFDVICAGKGTKYLPVYHQSTPDTVWSYYGFTEEQVASGDFNAQMFN
                     SFLDGTKSALEMAAVSNACDLRPPPDGLAFPACGVDDLPELLRPASEGGILPHRGSVE
                     VVSSLERDGRPVFRDLRWGVYAVFEAPSDYVRDCFSQYGLKTDKSGRFAAMYKPYHLI
                     GLELGVSIASIAVRGEATGATTGFHGDVAATAKRDLRAGERLDGEGGHTVYGKLMPAV
                     DSLLQGALPIGLAHNMVLQRPVAAGQPVRWSDVAFDSARESVRVRLEMEALFRKELGV
                     EVATEKIAS"
     gene            1741..>1969
                     /locus_tag="VKJ77_22080"
     CDS             1741..>1969
                     /locus_tag="VKJ77_22080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018312486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48020.1"
                     /translation="MSHISESLLVAPAARTDVYRKISWRIMPFIVLCYLCGYLDRVNV
                     GFAKLQMLNALHMSDAVYGLGAGIFFIGYFIF"
BASE COUNT          361 a          568 c          629 g          411 t
ORIGIN      
        1 aagcgaggca acgcgccggc ttagcgtgga atggtctacg cccatttgct gcgccgcgac
       61 agtgagacgc cccgcgcgtg cgacagcgag gaaggcttgc agggaatccc agtcaaatct
      121 tcgcatgggg atttttgcac agcgcggttg tggaattgcc cattctattg caaaaagttg
      181 gctgatatct ttggcttcat gtccttccct gatgaaggcg cgcggctcgt ttccggttga
      241 agaaccaagt cgaaccgcga ctcaaccgta tgaataaagg agacagcatg tcgcttatcg
      301 cgaagctcga agctcgtgcc caggcagggc gtcccgtcag agtagggctg attggcgccg
      361 gtaaatttgg ttcgatgtat ctgtcccaag caccgcgtac gcccggcatt catctggtcg
      421 gcattgcgga cctctcgcca gcacgggcac gcagtgccgt gcagcgcgtc ggctgggagg
      481 aagcgcgtta ctcggcgcgt tcgtgggctg aagctttgcg cagcggctcg accttcatca
      541 ccgacgacgc cgacgcgatg atcgcaagcg atcacgtgga tatcgtcata gatgcaacag
      601 ggagtcctat cgcgggcatt catcacgcgc tgttgtgctg caagtataag aaacatattg
      661 tgatggtcaa cgtggaagcc gacgtgcttg ccggcccgct gcttgcgcgg cgcgcggcgg
      721 aggcgggcat catctattca atggcctcgg gcgatcagcc ggcattgatt gcggaactgg
      781 tggactgggc ccgcacgatc ggcttcgacg tcatctgcgc cggcaagggc accaagtact
      841 tgccggtcta tcaccagtcg accccagaca ccgtctggag ctattacggc ttcacggaag
      901 agcaggtcgc ttccggagac ttcaacgcgc agatgttcaa ctccttcctc gacggcacga
      961 agtcggcgct ggaaatggcg gcggtatcga acgcatgcga tcttcgcccg ccccctgatg
     1021 gcctggcgtt tccggcctgc ggtgtcgatg acctgccgga gttgctgcgc cccgcctcgg
     1081 agggcggaat tcttccgcat cgcggcagcg tggaagtggt gtcgtcgctc gaacgcgatg
     1141 gccgccccgt gttccgcgac ttgcgctggg gcgtctatgc agtttttgaa gccccctccg
     1201 attacgtccg cgactgcttc tcacaatatg gtctcaagac ggacaagagt gggcgtttcg
     1261 ctgccatgta caaaccgtat cacctgatcg gtctcgaact tggggtatcg attgccagca
     1321 tcgcggtgcg tggtgaggct acgggcgcga ccacagggtt ccacggcgac gttgcggcca
     1381 ccgccaagcg tgacctgcga gcaggcgaac gactggacgg cgagggcggt cacaccgtct
     1441 acggcaagct gatgcccgcg gtggactcgc tgctgcaggg cgcgctgccc attgggcttg
     1501 cgcacaacat ggtgctgcag cgcccggtgg cggcggggca accggttcgc tggagcgacg
     1561 tggccttcga ttccgccagg gaatccgtgc gcgtgcgtct tgagatggag gccctgttcc
     1621 gcaaggaact cggcgtagag gttgcgactg aaaaaattgc atcgtaagca tgactgatcg
     1681 atggccgggc gtccgcccgg ccgtactcta taacgtccgg taaaggacga cggaggagac
     1741 atgagccata tcagcgaaag ccttttggtg gcgcctgcgg cgcgtaccga tgtgtaccgc
     1801 aagatcagct ggcgcatcat gccgttcatc gtgctgtgtt atttgtgcgg ctatctcgac
     1861 cgggtgaacg tcggttttgc caagttgcag atgctcaatg cgctgcacat gagcgatgcc
     1921 gtctatggcc tgggcgccgg catcttcttc atcggctatt ttattttcg
//
LOCUS       DATGBK010001579         3093 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_157365, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001579 DATGBK010000000
VERSION     DATGBK010001579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157365"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1375)
                     /locus_tag="VKJ77_22085"
     CDS             complement(<1..1375)
                     /locus_tag="VKJ77_22085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HMC48021.1"
                     /translation="MTYPTSREWIFSVKTFAASMLALYIGLKLELPRPYWAMATVYIV
                     SNPFVGATRSKALYRALGTMIGASAAVLFVPPFVESPYWFSAVVALWTGTLLLLAISD
                     RTARSYVFMLAAYTMPLIALPSVMNPAGVFDLAVSRTEEIVLGIVCASVVGGAILPSR
                     LAPTLIERTEAWFRDAAFYAKETLSGRTGGKGISACRQRLAVTVNALEFLLSQLAYDH
                     TRPDVLARTQALRGRMQLLLPIMSAISDPLAALFNGQKPPPPGLEPLLADIVAWFDAP
                     LSAPTDAASSINADNDPKADALRSRIASLQPDPDTLRTWEGALLSNTLWRLKQLVDVW
                     QDCRALRVIITNEQGSWRPRYRHWRLGGTQQYFDRGMLLFSAGSAVLAIFIASSLWIA
                     SGWNDGAGAVTLAAVACCFFAALDEPAPQVFAFFTYTCLAVVLAGLYLFVILPTVHDF
                     PMLVIMFA"
     gene            complement(1382..1912)
                     /locus_tag="VKJ77_22090"
     CDS             complement(1382..1912)
                     /locus_tag="VKJ77_22090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC48022.1"
                     /translation="MPTIDVLRQSVSSALVIASRQWRRTSHDVIAAYNVSEACATPLL
                     IAARLDAPIRQVALAELTGIEGPSLVRLLDQLCAANLVRRDEDPDDRRAKIISLTDEG
                     RSVTAKIEKELVGLRAGVLNDVSREDLEATLRVFAAFKLGASSQTQQASTHGSTHASH
                     QGPTIGPTDTDTEEGV"
     gene            complement(2015..>3093)
                     /locus_tag="VKJ77_22095"
     CDS             complement(2015..>3093)
                     /locus_tag="VKJ77_22095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011349907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cobalamin biosynthesis protein CobT"
                     /protein_id="HMC48023.1"
                     /translation="AEQVSGDPDAPDTASQEMSDAASSDAASMAQAPSDASAEASEAS
                     SPAPPMTFDIDMIDGRPRLSIPLTTEFDLITDLTGLGDAAAWRNLRALARAETAPLTA
                     RLERALKADEQTHWKREQERGEIDRPALAKLVVSPGYRTPFRVKRTTEGRDAAVTLLI
                     DRSGSMAGRKIALAKLCAAALCDALMQLSFKCEVLGYSSVESPEMRALYEQKLAEGVD
                     LNRFNRRVERLDLQIYKRFGSNNPMGLSEIDCGHENPDGEALAWAAERLAAQRAGRRI
                     LMVLSDGYPATGDGHPVILRTDLRARIDEITSSGMELIGIGLLDDAVEKFYAHNIVVR
                     KLDELPTMAFTVLSQLLLKRGYRR"
BASE COUNT          579 a          945 c         1007 g          562 t
ORIGIN      
        1 ccgcgaacat gatcacgagc atggggaagt cgtgcaccgt cggcaggatg acgaatagat
       61 acagcccggc gagcaccacg gcaagacagg tgtaggtaaa gaacgcaaac acttgcggcg
      121 cgggttcatc gagggcggcg aagaaacagc acgccaccgc cgccagcgtg accgcgcccg
      181 cgccgtcatt ccagccggac gcaatccaga ggctcgacgc gataaaaatg gccagcaccg
      241 cggagcccgc cgaaaacagc agcatgccgc gatcgaaata ctgctgcgtg ccgcccagcc
      301 gccagtgccg gtaacggggc cgccaactgc cttgttcgtt cgtgatgatc acgcgcagcg
      361 cgcggcaatc ctgccagaca tcgacgagtt gtttcaagcg ccacagtgtg ttcgacagca
      421 gcgcgccttc ccaggtccgc agcgtgtccg ggtctggttg caggctcgcg atccggctgc
      481 gcagagcgtc ggccttgggg tcgttatcgg cgttgatgga cgacgctgca tcggtgggcg
      541 cggacagcgg tgcgtcgaac catgcgacga tatcggcgag cagcggctcg agacccggtg
      601 gcggcggttt ctggccgttg aacaacgcgg cgagcgggtc gctgatcgcg gacatgatcg
      661 gcagcagcaa ttgcatccgg ccgcgcaacg cctgcgtccg cgcgagcacg tcgggccggg
      721 tgtggtcgta ggcaagctgg ctcagcagga actcaagggc gttgacggtg accgcgagcc
      781 gttgccggca cgcggagatg cccttgcctc ccgtgcgccc ggagagcgtt tctttcgcat
      841 agaaagcggc gtcgcggaac cacgcctcgg tccgttcgat gagcgtaggc gcgaggcggc
      901 tcggcaagat ggcgccgccg accacgctcg cacacacaat gccgagcacg atctcctcgg
      961 tccgcgatac cgcgagatcg aagacccccg cgggattcat cacggagggc agcgcgatca
     1021 gcggcatggt gtaggcggcc agcatgaaca catagctgcg tgcggtgcgg tcggagatgg
     1081 cgagaagcag cagcgtgccc gtccataacg cgaccacggc gctgaaccag tagggcgatt
     1141 ctacgaacgg cggcacgaac agcacggccg ccgatgcgcc gatcatggtg ccgagcgcac
     1201 gatacagcgc cttggaacgc gtcgccccca cgaacggatt cgacacgatg tacaccgttg
     1261 ccatcgccca gtaaggacgc ggcagctcca gcttgaggcc gatatacagc gccagcatgg
     1321 aagccgcgaa ggtcttgacc gagaatatcc attcgcgtga agtggggtac gtcatggtgc
     1381 gctagacgcc ttcttccgta tcggtgtcgg tcgggccgat ggtagggcct tggtgtgacg
     1441 cgtgtgttga cccgtgtgtt gacgcttgct gcgtttgact ggacgcgcca agtttaaacg
     1501 cagcaaatac ccgcagggtc gcttcaaggt cttcccggct cacatcattc agcacaccgg
     1561 cgcgcagtcc aaccagttcc ttctcgatct tggcggtcac cgaccggcct tcgtcggtga
     1621 gcgagatgat ttttgcgcgc cggtcgtcgg ggtcttcatc gcggcgtacg aggttggccg
     1681 cgcacaactg atcgagcaga cgcaccagcg aaggcccttc gattccggtc aattcggcga
     1741 gtgcaacttg ccggataggg gcgtcaagcc gcgccgcgat cagcagcggc gtcgcgcagg
     1801 cttccgagac gttataggct gcgattacgt catggctcgt gcgccgccac tggcgcgaag
     1861 caatgacgag cgcgctgctg acggattggc gaaggacatc gattgttggc atggcgcgca
     1921 ttgtatttcg acgacaattc gttagcaagc tattgaatta attttttggg gtgggatgat
     1981 cctgaagcga tgtgagggta gataacaacg cgactcaacg cctgtatccg cgcttgagca
     2041 ggagctggct cagtacggtg aacgccatcg tggggagttc atccaatttg cgcacaacga
     2101 tgttatgcgc ataaaacttt tctacggcgt cgtcgagaag cccgatacca atcagttcca
     2161 tccccgagct tgtgatttcg tcaatacgcg cccgcagatc ggtccgcagt atcaccggat
     2221 gaccatcgcc cgtggcggga tagccgtcgg acaggaccat caggatgcgc cggccggcac
     2281 gttgcgcggc caagcgctcg gcggcccacg ccagcgcctc gccgtccgga ttctcgtgac
     2341 cgcaatcgat ctcgcttaac cccattggat tgttcgaacc gaagcgcttg taaatctgca
     2401 gatccagccg ttcgacgcgc cggttgaaac ggttcaaatc tacgccttca gctagcttct
     2461 gctcgtaaag cgcgcgcatt tccggggatt cgaccgagct gtagccgagt acctcgcact
     2521 tgaacgaaag ctgcatcaat gcgtcgcaga gcgcggcggc gcagagcttg gctagcgcaa
     2581 tctttcggcc ggccatggag ccgctgcggt cgatcagcag cgtgacggcg gcatcccgtc
     2641 cttcggtcgt gcgcttcacg cgaaacggcg tccggtatcc cggcgataca accagcttcg
     2701 ccagcgcagg ccgatcgatc tccccgcgtt cctgttcgcg tttccagtgc gtctgttcat
     2761 cggctttcag cgcacgttca aggcgcgcgg tcagcggcgc ggtttccgcg cgcgcgagcg
     2821 cgcgcaggtt gcgccacgca gcggcgtcgc ccaggccggt gaggtcggtg atgagatcga
     2881 attcggtcgt gagcggaatg gacaggcgag gccggccatc gatcatgtcg atatcgaagg
     2941 tcattggtgg ggcgggcgag cttgcttccg atgcctctgc gctggcgtcc gacggtgctt
     3001 gggccatgct ggcggcatcg gaggacgctg cgtcggacat ttcttgcgat gccgtgtccg
     3061 gtgcatccgg atcgcccgac acctgctcgg cgt
//
LOCUS       DATGBK010001580         3399 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_249751, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001580 DATGBK010000000
VERSION     DATGBK010001580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3399
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249751"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1607)
                     /locus_tag="VKJ77_22100"
     CDS             complement(<1..1607)
                     /locus_tag="VKJ77_22100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HMC48024.1"
                     /translation="MTVRNLDALFNPKSIAVIGASLRAGSIGEMVWSRLSAANFAGPV
                     WAVNPKHRQLNGAAVFAGIDDLPDTPTVAVLCTPPPTWPKIVSQLGERGTRAVVIIGQ
                     AGEPEGKDWTHRTLAAARPFLLRVVGPASVGVMTPAVGAVLGAPSCAIAAGGVAWVSA
                     SNALTNGVMGWANARGLGFSRVVALGDEADVDVGDILDFLASDSRTRAILMAIESVRM
                     ARKFMSAARAAARNKPVLVLRTGHDDPFDALYSAAFRRAGLVRVDSLDDLLDEIETLG
                     VGRVAASDRATVITSDRGVAALAADAFAAAGDALALWPEAARASVAAVLPHARLENPL
                     QLGDTATAADFGAALEALAPHRETGTAFVVHAPTHTAPVAEVARVLIEQQSHAYRGLL
                     ACFFGCVDQATRDALHAHGIPVHTTPQRLARGFARLVDYRQGRELLMQTPDGPRPQTL
                     VALDSAQAQVMAALTAGVAELDGERASRVLAQFGVVVKAGSAGPRSVDAIEIDVRLLN
                     HRVFGPVFEFKAAGALGLPDAMHEFSFP"
     gene            1891..2760
                     /locus_tag="VKJ77_22105"
     CDS             1891..2760
                     /locus_tag="VKJ77_22105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48025.1"
                     /translation="MRHLPSLIALRFFEETARHLSFNRAARALCVTQGAVSRQIRLLE
                     ESLGVKLFERDHKGIRLTQAGVLLMPSVTEAFDVIERGTRHLTGTVERKRLIVSLPPT
                     FATQWFSSRLGGLAEQLPDVDLSIRTQESDECHCSVRFGRDAAAHGWSELLMVERHAL
                     VGSASFTGMPVETLLDRLPALHVLHEDVRLNLWPDWLAKAGLPPRYAENGIEFSNLQQ
                     AIHAARRGVGLAVVDLNMIADELIEGDLVRISDVEISGPFGYWLDVPEAYRDVSTVTG
                     FADWLRHEAALPV"
     gene            complement(2991..>3399)
                     /locus_tag="VKJ77_22110"
     CDS             complement(2991..>3399)
                     /locus_tag="VKJ77_22110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FimD/PapC C-terminal domain-containing protein"
                     /protein_id="HMC48026.1"
                     /translation="DVEFKSTSAQVAPRAGSIVMMKYETVSGRAALIQAPKLGGGALP
                     FGASVEDEQGKSVGVVGQDSRIFARGLEDQGALTVKWGSGPVEQCRIAYTLPKKDAKA
                     YNPGYLSLQSHCVPGSETVAGANNAATPATVAR"
BASE COUNT          654 a         1099 c         1014 g          632 t
ORIGIN      
        1 ggaaacgaga actcgtgcat cgcgtccggc aaaccgagcg cgccagcagc cttgaattcg
       61 aacacaggtc cgaacacgcg atggttcagc aagcggacat cgatttcaat ggcgtcgacg
      121 ctgcgcggac ctgccgaccc cgctttcacg acaacgccaa actgcgccag cacccgcgac
      181 gcccgctcgc cgtccagttc cgcgacgccc gccgtcaatg cggccatgac ctgagcctgt
      241 gcgctgtcca gcgcgaccag ggtctgagga cgcggcccgt cgggcgtctg catcaacagt
      301 tcgcggccct ggcgatagtc cactagccgt gcgaaacccc gcgccaggcg ttgaggcgtc
      361 gtatgaacgg gaatgccgtg ggcatgcaac gcgtcgcgcg tggcctggtc cacgcagccg
      421 aaaaagcaag ccagcaaacc gcgatacgcg tggctttgct gctcgatcag cacacgcgcg
      481 acttccgcga caggcgcggt gtgtgtgggc gcgtggacca cgaatgccgt gccggtttcg
      541 cgatgcggcg ccagcgcttc gagcgccgcg ccgaagtccg ccgcagtggc ggtgtctccg
      601 agttgtagcg ggttctccag acgcgcgtgg ggcagcacgg cggcgaccga cgcgcgcgcg
      661 gcctcgggcc agagcgcgag cgcgtcgccg gctgcggcga acgcgtcggc agcgagcgcg
      721 gccacgccgc gatcgctggt gatgacggtc gcccggtcgc ttgcggctac gcggcccacc
      781 ccgagggttt cgatttcgtc gagcaggtcg tcgagcgagt ccacccgtac caggccggca
      841 cgccggaaag cggcgctgta cagcgcatcg aaaggatcat catgacctgt gcgtaaaacc
      901 agcacgggct tgttgcgcgc cgccgcccgc gccgccgaca tgaatttgcg cgccatccgc
      961 accgattcga tggccatcag gatcgcgcgc gtccgtgagt cgcttgcgag gaaatccagg
     1021 atatccccca cgtcgacgtc agcctcatcg cccagcgcca ctacccgcga aaatcccagg
     1081 ccacgtgcgt tcgcccagcc catcacgccg ttggtcagcg cattcgacgc cgatacccac
     1141 gccaccccgc ccgccgcaat ggcgcatgac ggcgccccca gcaccgcgcc cacagccggg
     1201 gtcatcacgc cgacactcgc cgggccgacc acacgtagca aaaacggccg tgcagccgca
     1261 agcgtacggt gcgtccagtc cttaccctcc ggctccccgg cctgcccgat gatgacgacc
     1321 gcccgcgtcc cacgctctcc cagttggctg acaatcttcg gccacgtggg cggcggcgtg
     1381 cacaacacgg ctaccgtcgg cgtatcaggc aagtcgtcga taccggcaaa aacagcggcc
     1441 ccattcaact gacgatgctt cggattcacc gcccagaccg ggcccgcgaa gttggcggcg
     1501 ctcagccgcg accacaccat ttcgccaata ctgcccgcac gcagcgacgc cccgatcacg
     1561 gcaatcgact tcgggttaaa cagtgcgtcg agattacgta cggtcatgct gcctccatat
     1621 ccaggatgta tccagcatag gcgattcgag agcccccaac tactagccgg agggcctatg
     1681 tcccgccttt cccaacacgc gccctcacat ttactgatgc ccgatatgag aattcgtttt
     1741 gtttcagcgt caaccgaacg ggctattgtt tcgcaccggg aaccaaggta atttgatcga
     1801 acgcgggaca ggagccattc tgtttcgcgg aggaggcacg ttcactcggc cacacagaaa
     1861 accgagaagg ttgggcggtc aggaatcact atgcgacatc tcccatcgtt gattgcgttg
     1921 cgtttcttcg aagaaacggc gcgtcatttg agtttcaatc gcgcggcgcg agcgttgtgt
     1981 gtcacacaag gagctgtaag ccgacagatc aggctactgg aagagtcatt gggcgtgaag
     2041 cttttcgagc gcgatcacaa agggatccgc ttgacacagg caggtgtatt gctaatgcca
     2101 tcggtgaccg aggcatttga cgtgatcgag cgcggaacac gtcacctgac gggaaccgtc
     2161 gaacgcaagc gtttgattgt gtccctgccg cccaccttcg ccacgcagtg gttttcgtct
     2221 cggctaggcg ggctggcgga gcagttgccg gacgtcgacc tgtctattcg tacgcaggaa
     2281 agcgacgagt gtcattgcag cgtgcgcttc gggcgcgacg cggcggcgca tgggtggtcc
     2341 gaactgctga tggtggaacg gcacgcgctc gtgggatcgg cgtcgttcac cgggatgccg
     2401 gttgagacct tgctggatcg attgccggcg cttcacgtgc tgcatgagga cgtgcgtctt
     2461 aacctctggc cggactggct ggcgaaagcg ggactgccgc cgcgttacgc cgagaacggt
     2521 attgaatttt cgaatctgca acaggcaatc cacgcggcgc gacgcggcgt agggcttgcc
     2581 gttgtggatc tgaacatgat tgctgatgag ttgatcgagg gtgatttggt gaggatctcg
     2641 gacgtcgaaa tcagcggacc attcggatac tggctggacg tgccggaagc gtatcgcgac
     2701 gtcagcaccg tgaccggctt tgccgattgg ttgcgccatg aagctgccct gcccgtttga
     2761 atggcagtct cgactgaaga tggaagtgcg atgaggaggt taaccggaaa caacgtccga
     2821 gatgatgctt gccggtatga aatggtgaag cttgggtttg cattcaccga tccgctgcgg
     2881 gcgctgtctc acgcagatat gcgggacagc tgtgcgaatt caacagcttt gggaaatgat
     2941 tcgagtcaca ctatttcgct catttgttca aacgtcagcc cgaccaggct ctatcgtgca
     3001 acagtcgccg gcgtcgctgc gttgttcgca cccgccaccg tttcactccc cggcacgcaa
     3061 tgcgactgca gcgataaata cccggggtta taagccttcg catccttctt cggcagcgta
     3121 taagcaatcc ggcattgctc gaccggaccg ctgccccatt taaccgtcag cgcaccctgg
     3181 tcttccagtc cacgcgcaaa tattctgctg tcctgaccga ccacacccac gctcttgcct
     3241 tgttcgtctt ccacactcgc tccaaatggc aacgctccac cacccagttt cggcgcctga
     3301 atcaatgccg cccgaccact caccgtctcg tacttcatca tcactataga gcctgcacgc
     3361 ggcgccacct gcgctgatgt cgatttaaat tcgacatcg
//
LOCUS       DATGBK010001581         1921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_42157, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001581 DATGBK010000000
VERSION     DATGBK010001581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42157"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1019
                     /locus_tag="VKJ77_22115"
     CDS             <1..1019
                     /locus_tag="VKJ77_22115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC48027.1"
                     /translation="FLPASERGAGLSNLEYAPLCEIMGRVPWAPEVFNCGAPDTGNME
                     TIERYGSEQQKLQWLEQLLQGEIRSAFLMTEPDVASSDATNIQCSIVRDGDSYVINGH
                     KWWSSGAGDPRCKVYIVMGKTDPDAPKHQQQSMILVPADATGITVHRPLSVFGYDDAP
                     HGHMDITLEDVRVPVSSMLLGEGRGFEIAQGRLGPGRIHHCMRLIGMAERALELMSKR
                     ALQRVAFGKPIAAHGVTQERIAEARIMIEQARLLTLKAAYMMDTVGNKGARGEIAMIK
                     VVAPNIACQIIDWAIQAHGAAGVSDDFPLAYAYAHARTLRLADGPDEVHRNAIAKLEL
                     SRYA"
     gene            1134..1826
                     /locus_tag="VKJ77_22120"
     CDS             1134..1826
                     /locus_tag="VKJ77_22120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione binding-like protein"
                     /protein_id="HMC48028.1"
                     /translation="MIDVYSWATPNGHKIHIMLEELGLEYKAIPIDIGAGDQFTPEFL
                     AISPNNKIPAIVDSDGPGGKPLALFESGAILFYLAEKTGKFLPLDPVGRYTTMQWLMF
                     QMGGIGPMLGQAHHFRIYAPEKIEYAVNRYSNEAKRLYGVMDTQLGVTRYLAGNDYSI
                     ADIATFPWTRSWKNQGIELDEFPNVKRWFDEISARPAVIRGVEVLASARKELTGDKQR
                     EVLFGAQQYARR"
BASE COUNT          414 a          520 c          593 g          394 t
ORIGIN      
        1 tgttcctgcc cgcgtccgaa cgtggcgctg gattaagcaa tctggaatac gcgccgctct
       61 gcgagatcat gggccgcgtg ccatgggcgc cggaagtctt caattgcggc gcaccggaca
      121 cgggcaacat ggagaccatc gaacggtatg gcagcgagca gcaaaagctg caatggctcg
      181 aacagctgct gcaaggcgag atccgttccg cgttcctgat gaccgagccg gacgtggctt
      241 catcggatgc gaccaatatt cagtgcagca tcgtgcgcga cggcgatagc tacgtgatca
      301 acggccacaa gtggtggtcg tcgggtgcgg gcgatccgcg ctgcaaggtg tatatcgtga
      361 tgggcaagac cgatcccgac gcaccgaaac atcagcaaca atcgatgatt ctcgttcccg
      421 ccgacgcaac cggcatcacc gtacaccgcc cgctctcagt gttcggctac gacgacgcac
      481 cgcacggtca catggacatc acgctcgagg acgtacgcgt gccggtatcg agtatgttgc
      541 tcggcgaagg acgcggcttt gagatcgcgc agggacgtct tggaccgggc cgcattcatc
      601 actgcatgcg cctgatcgga atggctgaac gcgcgctcga actgatgtcg aaacgcgcgc
      661 tgcaacgagt ggctttcggt aaaccgatcg ccgcacacgg cgtgacgcag gagcgtattg
      721 ccgaggcacg catcatgatc gaacaggcgc gtctgcttac cctgaaagcg gcttacatga
      781 tggacaccgt cggcaacaag ggtgcacgcg gcgagatcgc gatgatcaag gtggtagcgc
      841 cgaacatcgc gtgccagatc atcgattggg cgatccaggc gcatggcgcg gccggtgtgt
      901 ctgatgattt tccactggct tacgcctacg cgcatgcacg gacactgcgg cttgcagatg
      961 ggcccgatga agtgcatcgg aacgcgatcg ccaagctgga gctttcacgg tacgcgtgaa
     1021 gcggtgctca gcgtctttct gcgaactatg gtctaatttt cggcagcgtt tttgagtggc
     1081 gacccctgat tgttcgggtc gccgctttcc ggtattcagg accaggagcg aaagtgatcg
     1141 acgtctatag ctgggccacg ccgaacggcc acaagattca tatcatgctg gaagaattgg
     1201 gactcgagta caaagcgatt cccatcgata ttggcgcggg cgatcagttc acgcccgagt
     1261 tcctggcgat cagcccgaat aacaagatcc ccgcgattgt cgatagcgat ggccccggcg
     1321 gtaagccgct cgcgctcttt gaatccggtg cgatcctgtt ttatctcgct gagaaaacgg
     1381 gcaagttctt gcctctggat cctgtgggcc gatacacgac catgcagtgg ttgatgttcc
     1441 agatgggcgg tattggaccc atgcttggcc aggcgcatca ttttcgaatt tacgcacccg
     1501 agaagatcga gtacgcggtc aatcgatatt cgaatgaagc caagcgctta tatggtgtga
     1561 tggacacgca attgggtgtg acgcggtatc tcgcgggaaa tgactattcg atcgcagata
     1621 tcgcgacgtt tccgtggacg cgatcctgga aaaatcaggg tattgagctc gacgaatttc
     1681 cgaacgtgaa gcggtggttt gacgagattt cggcgaggcc tgcggttatc cgcggcgttg
     1741 aagtacttgc ttctgcgcgc aaggaattga ccggtgacaa acaacgcgaa gtgctgtttg
     1801 gcgcgcagca gtacgcgagg cgttaagcat gcggaacgac aggttcctct tgggggaacc
     1861 tgcctgatga cggtacgaca tcgtccacgc acagactgtc agaagtaatg ccgtgtgatg
     1921 a
//
LOCUS       DATGBK010001582         3894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_342574, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001582 DATGBK010000000
VERSION     DATGBK010001582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3894
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342574"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..376)
                     /locus_tag="VKJ77_22125"
     CDS             complement(<1..376)
                     /locus_tag="VKJ77_22125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48029.1"
                     /translation="MADQLDDIKKAGKIRVAIAMGTPLFSYADANLQPAGSDVDTATA
                     LAKDLGVKLELVQITNAARVPTLQAKRADLVIADLSITPERAKVVDFSIPYAVITIIV
                     GGTKNESVKNYDDLNGKTIGLTR"
     gene            complement(513..1241)
                     /locus_tag="VKJ77_22130"
     CDS             complement(513..1241)
                     /locus_tag="VKJ77_22130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC48030.1"
                     /translation="MSAIVKLGDVYKSFGSNQVLKGVSLEVAKGEMIAVIGASGSGKS
                     TALRCIDRLETIDRGTIEVCGIRVDDPKVDLHQLRREVGIVFQSYNLFAHLTVEENIM
                     LALRHVKKLGRDEARRVAMGVLDQVGLAQKADAYPEQLSGGQQQRVAIARSLAMSPKV
                     MLFDEVTSALDPQLTGEVLRVMEDLAKDGMTMLLVTHEMAFAKRMADRIIYMHQGKVW
                     EVGSGDMLDAPQTPELRTFLNNGL"
     gene            complement(1225..1878)
                     /locus_tag="VKJ77_22135"
     CDS             complement(1225..1878)
                     /locus_tag="VKJ77_22135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008348026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC48031.1"
                     /translation="MTGGFTTAHLFYLVHSIWWTLVLSALAFVLGSIGGFGVMLARIS
                     PRRWLSRPAMVYIEAIQGIPLLILLFIVYFGLSVYGFQVPALVAAGLALMVYTSAYLG
                     DIWRGCIDAMPKPQWEAAECLSLTRWQTLRLVIIPQALRLALPPTVGFLVQVIKMTSL
                     ASVIGFVELTRAGQIINNSIFQPFLVFGLVGVFYFVLCYPLSRWSQSMEKKLNVGNR"
     gene            complement(1875..2624)
                     /locus_tag="VKJ77_22140"
     CDS             complement(1875..2624)
                     /locus_tag="VKJ77_22140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008348025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC48032.1"
                     /translation="MTFSLDFSPLLPYWPVFLKGAWLTLKMTTVAVFFGVILGTLVAF
                     AKRGRNRLLSRLCSIYIEAVRNTPFLVQIFLLYFGLASFGVRMPTFAAAALAMVINIG
                     AYAAEIIRAGLESVPRGQIEAAECLGLSRWRIGWHVMLQPSIEKVYPALTSQFLLMMQ
                     ASAIASQISAEELTATANTVQSDTFRSLETYIVVALLYLALSLLIKLIAWAVGEVAFK
                     RRRVMRQAAERAGKPAPDQGRIDTVIPGGAA"
     gene            complement(2734..3555)
                     /locus_tag="VKJ77_22145"
     CDS             complement(2734..3555)
                     /locus_tag="VKJ77_22145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017450038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC48033.1"
                     /translation="MANQEQTVPFKRLLLTGAAGGVGKVIRSRVAAFADKIRVSDLAA
                     ALPADAAPHEEVIPCDLSDKQAVDALVAGCDAVIHLGGVSVERPFEEVLEANIKGVYN
                     LYEGARRHGVKRVIFASSNHVTGFYRQDEKIDAHALRRPDGYYGLSKSFGEDVAQFYF
                     DRYGIETVSIRIGSAFPEPKDRRMMASWLSYDDLLELLQRSLFTPDVGHTVVYGMSDN
                     AVTWWDNRFASKLGFVPRDSSEPFRTKIDAQPAPEPGSAVAVLQGGAFTTAGPFE"
BASE COUNT          813 a         1240 c         1114 g          727 t
ORIGIN      
        1 cacgcgtgag gccgattgtc ttgccgttca ggtcatcgta attcttgacg ctctcatttt
       61 tcgtcccgcc tacgatgatg gtgatgaccg catagggaat cgagaagtcg acgaccttgg
      121 cgcgctcagg cgtaatcgag agatccgcta tcaccaggtc cgcgcgcttg gcctgcaagg
      181 tcggcacgcg cgcggcattc gtgatctgca caagctcgag tttcacgcca aggtccttgg
      241 caagcgccgt ggccgtgtcc acatcggacc cggccggctg aaggttggca tcggcgtagc
      301 tgaagagcgg cgtgcccatc gcgatcgcca cgcggatctt gcctgctttc ttgatgtcgt
      361 cgagctggtc agccatcgcg ctgtgcgcaa cgcccgcgag caacaaagcg gccacgcagc
      421 cgcgcgtgat gaatcgattg gtcttcaaat cagtctccat tcttatggtc ggttcaaaag
      481 atcttcttca cgcctgaact gcaacctaca ggctacaggc cgttgttcag gaacgtgcgc
      541 aactcgggcg tctgcggcgc atcgagcatg tcgccgctgc cgacctccca caccttcccc
      601 tggtgcatgt aaatgatccg gtccgccatg cgcttggcga aggccatctc gtgcgtgacc
      661 agcaacatcg tcatgccgtc cttcgccaga tcctccatca cgcgcagcac ttcgccggtc
      721 agttgcggat cgagcgcgga cgtcacttcg tcgaacagca tgaccttggg cgacatcgcg
      781 agcgaccgcg caatcgcgac acgctgctgc tgtccgcccg aaagctgctc cgggtaggca
      841 tccgccttct gcgcgaggcc gacctgatcg agcacgccca ttgccacgcg gcgcgcttca
      901 tcgcgtccga gtttttttac gtggcgcagc gccagcatga tgttttcttc cacggtcagg
      961 tgggcgaaca ggttgtagct ttgaaacacg atgccgactt cgcggcgcaa ctggtgcagg
     1021 tccaccttcg ggtcatcgac acgaatgccg catacctcga tcgtgccgcg gtcgatggtt
     1081 tccaaacgat cgatacaccg aagcgccgta ctttttcctg aaccgctcgc gccgatcacg
     1141 gcgatcattt cgcccttggc cacttccagc gacacgccct tgagcacctg gttcgagccg
     1201 aagctcttat agacgtcccc gagcttaacg attgccgaca ttgagctttt tctccatcga
     1261 ttggctccag cgcgagagcg gataacacag cacgaaatag aagaccccga ccagaccgaa
     1321 cacgaggaac ggctgaaaaa tcgagttgtt gatgatctgg ccggcgcggg tcaattcgac
     1381 gaaaccgatc accgaagcga gcgacgtcat cttgatgacc tgcaccagga aaccaaccgt
     1441 tggcggcagc gcgagacgca gcgcctgcgg gatgatcacg aggcgcaagg tctgccagcg
     1501 cgtcaatgac aggcattcag cggcttccca ttggggtttc ggcatggcgt ctatacaccc
     1561 gcgccagatg tcgccgagat acgcgctcgt gtagaccatc agcgcgaggc cggccgcgac
     1621 cagcgccggt acctggaagc catacacgga caaaccgaag tagacaatga acaacaggat
     1681 cagcagcgga atgccctgaa ttgcttcgat atacaccatc gccggacggc tgagccagcg
     1741 acgcggcgag atgcgcgcga gcatcacgcc gaagccgccg atgctgccca gcacaaaggc
     1801 gagcgcagaa agtacgagcg tccaccagat cgagtgcacg agataaaaca gatgtgccgt
     1861 ggtgaaaccg ccggtcatgc tgcacctccg ggaatcaccg tatcaatgcg cccctggtcc
     1921 ggtgccggct tgccggcccg ctccgcggcc tggcgcatga cccgccgccg cttgaacgcg
     1981 acctcgccca cggcccacgc aatcagcttg atcagcagcg ataacgcgag atacagcagc
     2041 gccacgacaa tgtacgtttc gagcgagcgg aaggtatcgg actgcacggt gttcgccgtt
     2101 gccgtgagct cttccgccga gatctgcgac gcgatggccg aggcctgcat catcagcagg
     2161 aactggctgg tcagcgccgg ataaaccttt tcgatggatg gctgaagcat cacatgccag
     2221 ccgatccgcc agcgcgacaa ccccaggcac tcggccgcct cgatctgccc gcgcggcacc
     2281 gattcaagac ctgcacgaat gatctcggcc gcgtaagcgc cgatgttgat caccatcgcg
     2341 agcgcggcgg cggcgaacgt cggcatgcgc acgccgaagc tggcaagccc gaagtacagc
     2401 aggaagatct gcacaagaaa aggcgtgttg cgcacggcct cgatatagat cgagcacagc
     2461 cgcgataaaa gccggttccg gccgcgcttc gcgaatgcga ccagcgtgcc caggatcaca
     2521 ccgaaaaaca ccgccacggt cgtcatcttc aacgtcagcc aggcgccttt caggaagacg
     2581 ggccagtacg gaagcagcgg actgaaatcg agagagaaag tcatcgcagc aatgtctagg
     2641 ttagtacgtg cacggcggcg cccgtcgcag ggctggcggg ctggcgggct taatccagcg
     2701 atattccaac gctattcgaa cctcatttga accttattcg aacggtccgg ccgtggtgaa
     2761 cgccccgccc tgcaacaccg ctacggcact gcctggctca ggcgccggct gcgcgtcgat
     2821 cttcgtccgg aacggctccg acgaatcacg cggcacgaat cccagcttcg atgcaaaccg
     2881 gttgtcccac catgtgactg cgttgtctga catcccgtag accacggtat gaccaacatc
     2941 tggagtaaac aggctgcgct gcaagagttc gagcaggtcg tcatagctga gccagctcgc
     3001 catcatgcgg cgatccttcg gctccggaaa cgcggagccg atacgaatgc tcactgtctc
     3061 gattccgtag cgatcgaaat agaactgcgc cacgtcttca ccgaacgatt tcgacaagcc
     3121 gtagtaaccg tcgggacgtc gcagcgcatg cgcgtcgatc ttctcgtcct gccgataaaa
     3181 cccggtcaca tgattggagc tggcgaagat gacacgcttg acgccatgcc ggcgggcgcc
     3241 ttcgtagagg ttgtaaaccc ccttgatatt ggcttccagc acttcttcga agggccgttc
     3301 caccgatacc ccgccgagat ggatgaccgc gtcgcagccg gcaaccagcg cgtcgaccgc
     3361 ctgcttgtcc gagagatcgc aagggatgac ttcttcgtgc ggcgccgcgt ccgccggcaa
     3421 tgcggctgcc agatccgaca ccctgatctt gtccgcgaat gcggccacgc gcgaacgaat
     3481 gaccttgcct acgccgccgg cggcgccggt cagcaacagc cgtttaaacg gaactgtctg
     3541 ttcttgattg gccatgtaag cctgtctcca ctaagcgcgg ctaccgggag cttgcacgct
     3601 cctttcgatt ggatcaccgc ttgatattgc ttttattgta cgttgtcata tgactacagc
     3661 gtgcatataa tcattcgcac atccgtttgt caactttggc gaaacattat cccaaccgag
     3721 gtagccgtgc agagaccgac tcgtgctgtc ttcgaaaccc cggcctaccc ccatgtacgg
     3781 cgtagcctga cagccgaact cgtcgatgcg ctgcgtcagc agatcgaaac tgctgaactc
     3841 aaagcgggcg cccggctcgc gaccgaagcg gagatggtcc agcgcttaag cgtg
//
LOCUS       DATGBK010001583         2274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_203939, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001583 DATGBK010000000
VERSION     DATGBK010001583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203939"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            309..1340
                     /locus_tag="VKJ77_22150"
     CDS             309..1340
                     /locus_tag="VKJ77_22150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48034.1"
                     /translation="MTDRVHAMRVFIRVVDTNSFSRAAESLGMPRASVSTTIQQLEAL
                     LGVQLLARTTRRLNLTAEGAECYERCVRILADIDDLEAGFHGRDERLRGRLRIELPDT
                     VATALVVPALPDFHARYPHIELSIGICNRAVDLVGEGVDCSVQLGELPDSGLIARRLG
                     TFEHVTCATPAYLEAHGTPKTLDELAQHVAVNCVSPRTGRPCDFDFEVDGEAVTVKMA
                     GFVQVTDEHAYLACGLQGLGLIQPPRIAALPYLRSGQLREVLPQWKSMPMNVSVAFVK
                     SRQAAPRVSAFVDWLAELFERSQEMDDTLTRLFRTARRPASTPAKAAASRPAAPRDED
                     AHEETTSES"
     gene            complement(1366..1668)
                     /locus_tag="VKJ77_22155"
     CDS             complement(1366..1668)
                     /locus_tag="VKJ77_22155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018431982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI-like protein"
                     /protein_id="HMC48035.1"
                     /translation="MHFLLMYELSADYLERRAAFRDRHLTVAWASAERGELLLGGALE
                     APVDRAMLLFEANSPAVVEAFARADPYVTEGLVTHWEVRKWNTVAGEGAAQPVRPA"
     gene            2081..>2274
                     /locus_tag="VKJ77_22160"
     CDS             2081..>2274
                     /locus_tag="VKJ77_22160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918358.1"
                     /note="Acylates the intermediate (KDO)2-lipid IVA to form
                     (KDO)2-(lauroyl)-lipid IVA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HMC48036.1"
                     /translation="MNNIGFSLVVALLRALARLPYGLVARFGSGLGALLYCIPSRRKH
                     IVQVNLQLCFPGKTAAEYELL"
BASE COUNT          407 a          731 c          683 g          453 t
ORIGIN      
        1 tgtctatcct gccggagatg ggcctgcggc tccatcaggc gccgtccggt gctgacatga
       61 gcggactggt gagcgggagg atcggcgggg gcgcaggcag cgcaagcgcc attggcggag
      121 cggaaagcgg ccgtttgcgc ggcgagttgc ctacgcttta gccggagaag caggcaagaa
      181 tccgcgactt ttgtgtattc acgcgaaccg tcctgatgcc taaagtgtga accttgccgg
      241 cattccttct gcatcacccg aaggtgcccg ccggtcatcg cactcatcgc ttctacagga
      301 aaactcccgt gaccgatcgc gttcatgcca tgcgtgtgtt catccgcgtc gtcgatacca
      361 acagcttctc gcgcgccgcc gaatctctcg gcatgccgcg tgcaagcgtc tcgacaacca
      421 ttcaacaact cgaggcgctg ctcggcgtgc aactgcttgc acgcaccacg cgacgtctca
      481 atctcacggc cgaaggggcc gagtgttacg agcgctgcgt gcgcattctc gcggatatcg
      541 acgatctgga agcgggcttt cacggccgcg acgagcgtct gcgcgggcgt ctgcgcatcg
      601 agttgcccga tacggtcgcc accgcactgg tcgtacccgc gctgcccgat ttccatgcgc
      661 gttatccgca tatcgagctg tcgatcggta tctgcaatcg cgccgtcgat ctggtcggcg
      721 aaggcgtgga ttgcagcgtg caactcggcg aattgcccga ttccgggttg atcgcacggc
      781 ggcttggcac ctttgagcat gtgacgtgtg cgacgcccgc gtatctggaa gcgcacggca
      841 cgccgaagac actcgacgag ctcgcacagc acgtcgcggt gaactgcgtg tcgccccgca
      901 ctggccggcc gtgtgatttc gacttcgaag tggacggcga agcggtaacc gtgaagatgg
      961 cgggttttgt tcaggtcacc gacgaacacg cgtatctcgc gtgcggcctg caggggctcg
     1021 ggttgattca gccgccgcgc attgccgcgt tgccgtacct gcgttccggg caactgcgcg
     1081 aggtgttgcc gcaatggaag tcgatgccaa tgaatgtgtc ggtggcattc gtcaagagcc
     1141 ggcaagccgc gccgagggtc agcgcgttcg tggactggct ggcggaattg ttcgagcgct
     1201 cgcaggaaat ggacgatacg ctcacgcgcc tgttccgtac ggcccgtcgc ccggcttcca
     1261 ctccagcgaa ggccgcggca tcaagacctg ctgcaccccg cgacgaggac gcgcacgagg
     1321 aaaccaccag cgaatcgtga tcctgcatgt cgctagcatg ggcgctcacg ccggcctgac
     1381 cggctgagca gccccctcgc cggccaccgt attccacttg cgcacttccc agtgcgtgac
     1441 cagcccctcg gtcacatacg gatcagcccg cgcgaacgcc tccaccacgg cgggcgagtt
     1501 cgcctcgaac agcagcatcg cccggtcgac gggtgcctcc agcgccccgc ccagcaacaa
     1561 ttctccgcgt tccgccgacg cccatgccac cgtcagatgg cggtcacgaa acgccgcccg
     1621 acgttcgaga taatcggcgc tcaattcgta catcaataga aagtgcataa gcttgtctcc
     1681 gttgcaggcg acgctgcgcg cgtcggaatc gaacgatcgt gccgtatgta ataagcgcat
     1741 agttgacacg catggcaagc atgtaagact cggtaggcaa gccaaaactg tatgccagag
     1801 tccgtgtgtg cgatcatgac gacactttcg acttttacct tggcgcaggt tcgcgaattg
     1861 cccgcgacgc tcaagattca ggcagcgtcg gacgctctcc ggaacaggcc tgttccgcgg
     1921 ctttcgcctc ttggttcccc ggctgaaggg ttaattactc tcgccgcgcc tgggtttcgc
     1981 cgttactcct cttcgacatc cggccacatg ccgatcgtcg aagtttaaat tcacccggcg
     2041 ctcgtcatac gcatttcgcc gcccgtttca aggggcaagt ttgaacaaca tcggtttctc
     2101 gctcgtcgta gcgctgctcc gcgcgctcgc tcgcctgcct tacggcctgg tcgcgcgatt
     2161 tggcagcggc ctcggtgcgc tgctttattg cattccgagc cgtcgaaaac acattgtgca
     2221 ggtcaatctg caattgtgct ttccgggaaa gaccgccgcc gaatacgaat tgct
//
LOCUS       DATGBK010001584         3028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_227316, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001584 DATGBK010000000
VERSION     DATGBK010001584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227316"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1105)
                     /locus_tag="VKJ77_22165"
     CDS             complement(<1..1105)
                     /locus_tag="VKJ77_22165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48037.1"
                     /translation="MNDTTIIRTVEGEKEAPGRIIETDLPGRLDRLPWGRFHTLIVLA
                     LGITWLLDGLEVTLAGAVASALKTSHVLKFSNADVGFAGSAYIAGAVIGALGFGWLTD
                     RLGRRKLFFITLFLYVAATAATAVSWNLASFVLFRFLTGAGIGGEYTAINSTIQEFTP
                     ARVRGWTDLAINGTFWVGAGLGAAGSIVLLDPGLLPPDYGWRACFLIGAILGLLILFM
                     RMWVPESPRWLITHDRVDEAKEIVEGIEAKFREHGVTLPADPVKPLRLHARDHTKLSE
                     VFHSLFHSHRRRSLVGLTLMTAQAFFYNAIFFTYALVLTDFYGVPGDHIGWYVLPFAA
                     GNFLGPIMLGKLFDVLGRRKMIAFTYAMSGVLLT"
     gene            1302..2552
                     /locus_tag="VKJ77_22170"
     CDS             1302..2552
                     /locus_tag="VKJ77_22170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HMC48038.1"
                     /translation="MTYCAIDFGTSNSAVALPDGASIRLAPVEGSATTLPTAVFFNTD
                     EDEQAYGRAALESYIDGFDGRLMRSMKSILGSPLAETSTDLGDGSAIRYVDVITLFLQ
                     HLKQKAQAVSSTPITRAVLGRPVFFVDDDPRADQLAQNQLQAAAQAIGLTDIHFQYEP
                     IAAAFDYEARLTKEGLVLVADIGGGTSDFSLVRVGPARAKLLSRKDDVLAHYGVHVAG
                     TDFDRRVELATILRELGYQSIAPEGREVPNRVYFDLATWHLINTVYGPKRVNELQLMR
                     HLYSDSKHHDRLMRVVERRLGHALASHSEAAKIEVAAGGETTIGMEEVEEALRIGFSE
                     QQLIDAGLEETRRIVAAARETVHRAGVTPQDVGAIYFTGGSTGLGFLSQSLSDAFPDA
                     EAVFGDRLASVATGLGIYARRLFG"
     gene            complement(2687..2890)
                     /locus_tag="VKJ77_22175"
     CDS             complement(2687..2890)
                     /locus_tag="VKJ77_22175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HMC48039.1"
                     /translation="METGTVKWFNDAKGFGFITPDGGGEDLFAHFSEVRVEGFKTLQE
                     NQKVTFEVKTGPKGKQAADIKPA"
BASE COUNT          640 a          907 c          892 g          589 t
ORIGIN      
        1 tggtcagcaa cacccccgac atagcgtagg tgaaggcgat catcttgcgc cggccaagga
       61 catcgaagag tttgccgagc atgatcggcc cgaggaaatt gcccgcggcg aacggcaaca
      121 cataccagcc gatgtgatcc cccggcacac cgtagaaatc ggtcagcacc agcgcgtagg
      181 tgaaaaagat cgcgttatag aaaaacgcct gggcggtcat caacgtcaat ccgaccagcg
      241 agcgccgccg atgcgaatga aacagggagt ggaacacttc actgagtttc gtgtgatctc
      301 gggcgtgcag gcgcagtggc ttgacgggat ctgcgggcaa tgtcacgcca tgttcgcgaa
      361 acttcgcctc gatgccctcc acaatttctt tcgcctcatc tacgcgatcg tgcgtgatca
      421 gccaacgcgg actttcgggc acccacatgc gcatgaaaag gatcagcaat ccgaggattg
      481 cgccgatcag aaaacacgcc cgccagccgt aatcgggcgg cagcaagcct ggatccagca
      541 gcacgatcga acccgctgcg cccagtcccg cgcccaccca gaacgtgccg ttaatcgcca
      601 agtccgtcca gccgcgcacg cgagcggggg tgaactcctg gatcgtggaa ttgatcgctg
      661 tgtattcgcc cccgatccct gcgccggtca ggaagcgaaa caacacaaaa ctcgcgagat
      721 tccatgaaac ggccgtggcc gccgtggccg ccacgtacaa aaacagggtg atgaaaaaga
      781 gtttgcggcg gcccagccgg tctgtaagcc agccgaaacc cagcgcgccg atcaccgcgc
      841 ccgcaatgta ggcgctgccg gcgaatccga catcggcgtt cgaaaacttc agcacgtgac
      901 tggttttcaa cgcgctggcc accgcgccgg cgagcgtcac ttctagcccg tcgagcagcc
      961 acgtgatccc gagcgccagc acaatcagcg tatgaaagcg gccccacggc agtcggtcga
     1021 gccttccggg cagatcggtt tcaatgatcc tccccggcgc ttccttttct ccttcaactg
     1081 tgcggatgat cgtggtgtcg ttcatacgtt tggccggtaa cgtgggaatg accggccacg
     1141 cgccaccggc agagagcatt aattaccggg ttttcgagca aaatccgttc ccccggccat
     1201 gtttttgatt ggctgttgat gtactgcgcg ttacgtgcta aaaacgcgct ccactttttg
     1261 tttgcgacgt cggcggcgtt gacgctgccg tcgctcacct catgacctat tgcgcgatcg
     1321 atttcggcac gtcgaattca gcggtcgcat tgcccgacgg ggcgtcgatc cggcttgcgc
     1381 cggtcgaagg cagcgccacc acgctgccga ccgctgtctt tttcaacacg gacgaggacg
     1441 agcaagccta cgggcgtgcc gcgctcgagt cttacatcga cggcttcgac ggccgcctga
     1501 tgcgctccat gaagagcatt ctcggctcgc cgctggcaga gacgagcaca gatctgggcg
     1561 acggctcagc gattcgctac gtcgacgtca tcacgctgtt tctgcagcat ctgaagcaga
     1621 aggcgcaagc cgtttccagc acgccgatca cgcgggcggt gctgggccgc ccggtatttt
     1681 tcgtcgatga cgatccgcgt gccgatcagc tcgcccagaa ccagcttcag gccgcggccc
     1741 aggccattgg tctgacagat attcatttcc aatacgaacc gatcgccgcc gctttcgatt
     1801 acgaagcacg tctgacgaaa gaggggctgg tgctcgtcgc ggatattggc ggcggcacgt
     1861 cggacttctc gctggtgcgg gtcgggccag cgcgcgccaa gctgttgtcg cgaaaagacg
     1921 atgtgctcgc gcattacggc gtccacgtgg ctggaacgga cttcgaccgg cgtgtggagc
     1981 tcgcgacaat cctgcgcgaa ctcggctacc agtcgatagc gccagaaggc cgcgaagtgc
     2041 ccaatcgcgt ctatttcgac ctggccacct ggcatctgat caacaccgtc tacgggccga
     2101 aacgtgtcaa cgaactccag ttgatgcggc acctctacag cgactcgaag caccacgatc
     2161 gactgatgcg agtggtcgaa cgccgtctcg gacacgcgct ggcgtcgcac tcggaggccg
     2221 cgaagatcga agtggcggcg ggcggtgaga cgactatcgg catggaggag gtggaagagg
     2281 cgctgcgtat cggcttcagc gaacaacagc tcatcgacgc agggctggaa gagacgcggc
     2341 ggatcgtggc ggctgcgcgg gaaacggtgc accgcgcggg tgttacgccg caggacgtgg
     2401 gcgcgatcta tttcacgggc ggatcgaccg gactcggttt tctgtcgcaa tcgctctccg
     2461 acgcgttccc cgatgctgaa gcggtgtttg gcgaccggct ggccagcgtg gcgaccgggc
     2521 tcggtattta tgcgcgccga ctattcggtt gaccggtatt aattgctact atcatccagt
     2581 cagtcattta aagtaatttc tcattaacta ctgataaatc cgtaacgcaa aaagaaaaac
     2641 cccgcgaatg cggggtttgg tctgctattc aaacgggcaa taaaacttag gccggcttga
     2701 tgtctgcagc ttgcttaccc ttcgggccgg tctttacttc gaaggtaact ttctggtttt
     2761 cctgaagcgt cttgaagcct tccacgcgaa cttcagagaa atgtgcgaac aggtcttcgc
     2821 caccgccgtc cggcgtgatg aagccaaagc cctttgcgtc attgaaccat ttgacggtac
     2881 cggtttccat gttacgtgtt cctaaagatg ttgaataagg ccgaagcccg gatgtgcatg
     2941 aaaatcaagg aaggggcaat gggaccaacc ggagtaccgt gatgggcgaa ctacgaaaga
     3001 ccaattcact cgccacttga aatcctgc
//
LOCUS       DATGBK010001585         1679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_296365, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001585 DATGBK010000000
VERSION     DATGBK010001585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1679
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296365"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..491)
                     /locus_tag="VKJ77_22180"
     CDS             complement(<1..491)
                     /locus_tag="VKJ77_22180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HMC48040.1"
                     /translation="MNREPTPLHPLLARLREARQITDAVFGIVKPEFLYERPISERHR
                     IVFYIGHLEAFDRNLFDQRLFDLSSPNPEFDQLFAFGIDPVDGGLPSDQPQDWPSLDT
                     IRAYVQRIRDDIDARFDSAEITKREDKHDNASAPEATPETLLEVAIEHRLMHAETLAY
                     MLH"
     gene            complement(595..1335)
                     /locus_tag="VKJ77_22185"
     CDS             complement(595..1335)
                     /locus_tag="VKJ77_22185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC48041.1"
                     /translation="MQTVHETPVPLPSASSRHAAHCSTCALRHYCLPQGLSSDDVNRL
                     QKVIVNARTIKRGETLFRVGDTFDTLYAIRSGSIKTVVSTPNGNGREQVMGLHLGGDA
                     LGLEGFDNGRHACHAVALEDSSVCLIPYVHFERACRETSALQRRLLQLLSREVVRKAT
                     QTLILGTLRADERVAALLLDLSARLTRRGYAGNEFNLRLTRDDMGSFLGITLETVSRT
                     LSRFQAKRLIEANGKLIHILDFDGLRAI"
     gene            complement(1463..>1679)
                     /locus_tag="VKJ77_22190"
     CDS             complement(1463..>1679)
                     /locus_tag="VKJ77_22190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018423612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HMC48042.1"
                     /translation="EGSSVDDVAELVLAAAVAFNADLLVMGTHGRKGFQRLILGSVAE
                     RCLRQATLPVLLIPAASGTGAVPASKE"
BASE COUNT          326 a          486 c          547 g          320 t
ORIGIN      
        1 tgatgcaaca tgtacgcgag cgtttccgcg tgcatcagcc tgtgctcgat cgcgacctcc
       61 agcagcgtct caggcgtggc ttccggagca ctggcattgt catgcttatc ttcacgtttt
      121 gtaatttcgg cggaatcaaa acgcgcatcg atgtcatcgc gaatccgctg cacataggcg
      181 cgaatcgtgt ccagcgacgg ccagtcttga ggctgatcgc tcggcaggcc accatcgacg
      241 ggatcaatgc cgaacgcaaa taactggtcg aactcgggat tcgggctgga caggtcgaag
      301 aggcgctgat cgaacagatt gcggtcgaag gcctccagat gcccgatgta gaacacgatc
      361 cgatgccgct cggaaatcgg gcgttcatac aggaattcgg gtttgacgat gccgaatacc
      421 gcgtcagtaa tctggcgcgc ttcgcgcagg cgggcgagca gcggatgtag cggggtaggt
      481 tcgcgattca tttcgctctt gtctccgggc acgggccgat gcaaaacgat aaatcgtagc
      541 agagggcatg ccaagcctgc ttggatcgca gcgggccaga aactggatcg cgcgctagat
      601 tgcgcgcagt ccgtcgaagt cgaggatgtg gatgagcttg ccgtttgctt cgatcaggcg
      661 ctttgcctga aaacgcgaca gcgtccggct gaccgtttcc agcgtaatgc cgagaaaact
      721 gcccatgtcg tcgcgcgtga ggcgcaggtt gaactcgttg cccgcgtaac cgcggcgggt
      781 caaccgggcg gaaagatcca gcagcagggc ggcgacccgc tcgtcggcgc gcaacgtgcc
      841 gaggatcagg gtttgtgtcg ccttccggac gacttcacgg ctcagcaact gcaggagccg
      901 acgctgcagg gcgctggttt cgcggcaggc gcgctcaaag tgcacatagg ggatcaggca
      961 gaccgaactg tcttcgaggg cgacggcgtg gcatgcgtgc cggccattat cgaatccttc
     1021 gaggccaagc gcatcgccac ctagatgaag acccatgacc tgttcgcggc cgttgccgtt
     1081 tggtgttgat acaacggttt tgatcgagcc ggagcggatg gcgtagaggg tgtcgaaggt
     1141 gtctcctacg cgaaacaggg tttcgccccg cttgatcgtg cgggcgttga cgatgacttt
     1201 ctggagcctg ttgacatcgt cggaggagag gccttgcggc aggcagtagt gcctcaaggc
     1261 gcaagtcgag caatgagcgg catggcgcga ggaggcgctg ggcagaggaa caggggtctc
     1321 gtggacggtt tgcatggctc gctcgctttt agttcgtgtt gatctggaac aaggaaattg
     1381 tcccatcgat gcgatccgcc cccgggtggc aaaacgtcgc gtgagaacac ggccgctgcc
     1441 ccacccgcac gccccggcgt ttttattcct ttgatgcagg cactgcgccg gtcccggagg
     1501 ccgccggaat cagcagcacc ggcagcgtcg cctggcgcag gcacctttcc gcgacactgc
     1561 cgagtatcaa ccgctggaag cccttgcgac cgtgcgtgcc catcacgagc aggtccgcgt
     1621 tgaacgcgac ggcggcggcg agcaccagct ccgcgacatc atccaccgac gaaccctcg
//
LOCUS       DATGBK010001586         1882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_157500, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001586 DATGBK010000000
VERSION     DATGBK010001586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157500"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..352)
                     /locus_tag="VKJ77_22195"
     CDS             complement(<1..352)
                     /locus_tag="VKJ77_22195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48043.1"
                     /translation="MVEITARIIHRSIHFRSQRTDNSGGASSGGCARVLSSSAERDAI
                     EQHSNMPPRQFSKPVPLREARPRRRRLFAALIAVPGLMPALAHAQLAGAAADTQPLGD
                     AWSLRLAPQLLERPL"
     gene            455..1480
                     /locus_tag="VKJ77_22200"
     CDS             455..1480
                     /locus_tag="VKJ77_22200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006398321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HMC48044.1"
                     /translation="MTPPNTDFRLTQLHDWLQTLAERYRLDLSTLAPASADASFRRYF
                     RLTADSDFGKTLIAVDAPPPEKCREFVQVAGLLRDAGVHVPQILETDFDAGFMLVTDL
                     GTTTYLSVLDEKNARPLMRSAIDALIKFQVTSREGVLPSFDEAFLRREMELMPEWFVA
                     KHLGHTLDAAERKVLDDTFNVLVESALAQPQLFMLRDFMPRNLMVSEPNPGVLDFQDA
                     VYGPLSYDIASLLRDAFISWEEEFELDCFVYYWEGARKAGLPVDADFGEFYRQIEWMG
                     LQRHIKVLGLFARIYHRDGKPQYLADLPRFIGYARKVSERYRPLRPFARLLDTLEGRA
                     VDVGYTF"
     gene            1507..>1882
                     /locus_tag="VKJ77_22205"
     CDS             1507..>1882
                     /locus_tag="VKJ77_22205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013699342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HMC48045.1"
                     /translation="MIFAAGRGERMRPMTDSCPKPLLKVNGKALIIWQIERLAAAGFK
                     VIVINHAWLGRMLVSNLGNGSRWGVEIRYSPEMHALETAGGIAKALPLLETDGEAAVF
                     LAVSGDVFCEFDYASLRARAPAM"
BASE COUNT          343 a          535 c          598 g          406 t
ORIGIN      
        1 gcagcggccg ctccaggagc tgcggcgcga gccgcaggct ccaggcgtcg ccgagcggct
       61 gcgtgtcggc tgccgcgccc gctagctgcg cgtgcgcgag cgccggcatg agaccgggca
      121 cggcgatcag tgccgcgaac agccgccgcc tgcgtggccg cgcttcgcgc aatggaactg
      181 gtttggaaaa ctgtcgtggc ggcatgtttg agtgctgttc aatcgcgtca cgctcggcgc
      241 tcgacgagag tacccgggca cagccaccgg aactcgcgcc accggagttg tcggttcgct
      301 gcgaacgaaa gtgaatcgat cgatggatga tacgggcggt gatctcgacc aacggcagcc
      361 tcatggcctg ccaaaggctt cgcgccgggc gcaaacggaa tgcttaaaaa agtcgtgggg
      421 tattatatgg caagacgttt cacccctcga atttatgacg cccccaaaca ccgattttcg
      481 ccttacccag cttcatgact ggctgcaaac cttggccgag cggtatcggc tggacctttc
      541 cacacttgcc cccgcttctg ccgatgccag tttccggcgt tatttccggt tgaccgccga
      601 cagcgatttc ggcaagacgc tgattgccgt cgatgccccg ccgcccgaga aatgccgcga
      661 gttcgtgcag gtcgccgggt tgctgcgcga cgccggcgtg catgtgccac agatcctgga
      721 aacggatttc gatgccggtt tcatgctggt gaccgatctt ggcacgacca cgtacctctc
      781 cgtcctcgat gaaaagaacg cccggccgct gatgcgctcg gcgattgatg cattgatcaa
      841 gtttcaggtg acgtcgcggg aaggcgtgct gccttcgttc gatgaagcgt ttctccgtcg
      901 cgaaatggag ctcatgccgg agtggttcgt cgcgaagcat ctcggccaca cgctggatgc
      961 ggccgaacgc aaagtactcg atgacacgtt caacgttctg gtggaaagcg cgttggccca
     1021 gcctcaactc ttcatgctgc gcgatttcat gcctcgcaac ctgatggtca gcgagccgaa
     1081 tcccggcgtg ctcgacttcc aggacgcggt gtatggaccg ttgagctatg acatcgcttc
     1141 gttgctgcga gacgcgttca tcagctggga agaagaattc gaactcgact gcttcgtcta
     1201 ctactgggaa ggcgcgcgca aggccggact gcctgtggat gccgatttcg gcgagtttta
     1261 ccggcagatc gaatggatgg gattgcagcg ccatatcaag gtgctggggc tgttcgcgcg
     1321 tatttatcat cgcgatggaa aaccgcagta tctggccgat ttgccgcggt ttattggtta
     1381 tgcgcggaag gtgtcggaac ggtacaggcc gttgcggccc tttgcgcggt tgctcgatac
     1441 gctcgaaggt cgcgctgtgg acgtgggtta cacattttga acgctttgaa tactttgacc
     1501 acagccatga tttttgccgc cgggcgcggc gagcgcatgc gtccgatgac ggattcatgc
     1561 ccgaagcctt tgcttaaagt taacggtaag gcgctgatca tctggcagat tgaacggctt
     1621 gcggcggcgg gttttaaggt catcgtgatc aatcacgcgt ggcttgggcg catgcttgta
     1681 tcgaatctcg gcaatggttc gcgctggggc gtcgaaattc gctactcgcc cgagatgcac
     1741 gcgctggaga cagcgggtgg aattgccaaa gcgttgccgc tgctcgaaac agacggtgaa
     1801 gcggcggttt tcctggcagt cagcggcgac gtgttctgcg aattcgacta tgcgagtttg
     1861 cgcgcgcgcg cgcctgcgat gg
//
LOCUS       DATGBK010001587         1747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_273777, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001587 DATGBK010000000
VERSION     DATGBK010001587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273777"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            565..1737
                     /locus_tag="VKJ77_22210"
     CDS             565..1737
                     /locus_tag="VKJ77_22210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007855337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monodechloroaminopyrrolnitrin synthase PrnB
                     family protein"
                     /protein_id="HMC48046.1"
                     /translation="MTVNTEKFDRWIRREFVEMNTALEEIYFAQSDRSAVENVGDSIK
                     KPLVEDGRSFILQLLKEGNTDEGFDSAFDLLGNVGLYMAACRRHDITEPSRESMSPLT
                     EASGLALHLGASIGVTPRFATSHLATHNLAKQGRYKSFTSLADESIFIDYNTRGIFAY
                     KRAADALVRILPLGISHPVAYDLLADAKNALLDVAKWNEVLFRDLDSERFFFSVRPYY
                     KPYRVGLHEYRGANAGDFSGINEVDLLLGLCNANNISYSQLLVDKFLFMMPEDQARLR
                     DCMRRQSLLDALLSELPESQRQPWYQRNAAMFLEVCKTHGAAALQHHNQLVKRFIEAP
                     SQTLPISRLTHITASGPPLGVLLRSLEKLRDLRVAAERDDIPSRYRDIQSLQRSLR"
BASE COUNT          348 a          520 c          516 g          363 t
ORIGIN      
        1 tgatcatcat gccgcaaagc gcgcgctcct tcgtccagca gctcgacttc gtgacctcgg
       61 tcgggtttct cgacggcggc gatgcgcgcg cgcgccggac taccgggcaa gggtcccgtg
      121 gcagtgatta cagatttgtg catcttcgag cccgatccgg tcagccgtga gctaacggtt
      181 gtctcaattc atccgggcgt cgagcgtgca acactcgaag cggcgactgg ctggccagta
      241 cgttattttc cgcgcgtcag cgcgacggac tcgccaaata cgcgtgagct cagcacgctg
      301 cgagatctta ttcagcgcac cgcaacggct cacggaccgg actgaggaag ccgcatccga
      361 ggcctgcgca gtagactccg gagcgttgcg gccggcaatc gcactgagca tggctgcggg
      421 atccggcgtc gcgatcattg cactgctgtt ggcgctgtcg atgtttcgta cccgtaaggt
      481 tgcggcgcgt tgaattggct gcactgaacc gccgctgatg aaacgggttc atacttccgg
      541 cgggacgggc ttgaggcgca gcagatgacc gtaaacacag aaaaattcga ccgatggatt
      601 cgtcgcgaat tcgtcgaaat gaacacagct ctggaagaga tttactttgc gcagagcgat
      661 cgatcggcag tcgagaacgt cggcgactcg atcaagaagc cgcttgttga agacggccgc
      721 agcttcattt tgcagttact gaaggaaggc aatacggatg aaggattcga ttcggccttc
      781 gatctgctgg gtaatgtggg cctgtatatg gcggcatgcc gccgccatga cattaccgag
      841 ccttcgcgcg agagcatgtc tcccctcact gaggcgtcgg ggctcgcctt gcatcttggt
      901 gcatcgattg gcgtcacgcc acgctttgcc acgagtcacc tggccacgca caacctcgcc
      961 aagcaaggca ggtacaagag ctttacgtcg cttgccgatg agtcgatatt tatcgactac
     1021 aacacccgtg gtattttcgc ctacaagcgc gcggcggatg cgctggtgcg gattctgcct
     1081 ttggggattt cgcacccggt tgcctacgac ctgctcgccg atgcgaaaaa tgcgctcctc
     1141 gatgtggcca agtggaacga ggtgctattc cgggacctcg acagcgagcg tttcttcttc
     1201 agcgtacggc cctactacaa gccctatcga gtcgggctgc acgaataccg cggcgccaac
     1261 gccggggact tctccgggat caacgaggtc gacctgctgc taggcttgtg caatgccaac
     1321 aacatctcct attcgcagct gctcgtcgat aaatttctct tcatgatgcc cgaagaccag
     1381 gcacggctgc gcgattgcat gcgccgccag agtctgctgg acgcgttgct aagtgagctt
     1441 cccgagtcac agcgacagcc ttggtatcaa cgcaacgcag cgatgtttct cgaggtgtgc
     1501 aagactcacg gggcggccgc gcttcaacac cataaccaac tcgtgaagcg ttttatcgag
     1561 gcgccttcgc aaacgctgcc gatctcacgc ctcacacaca tcactgcgag cggaccgccg
     1621 ctcggagtat tgctcagatc gcttgaaaag ctgcgtgacc tgcgcgtagc ggcggagcgc
     1681 gacgatattc cgagccgcta tcgcgatatc cagtcgctgc agcgcagttt gcgctgatcc
     1741 gggcgca
//
LOCUS       DATGBK010001588         3147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_204018, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001588 DATGBK010000000
VERSION     DATGBK010001588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3147
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204018"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..282)
                     /locus_tag="VKJ77_22215"
     CDS             complement(<1..282)
                     /locus_tag="VKJ77_22215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC48047.1"
                     /translation="MAYEAASERYSQMAYRTCGKSGLKLPALSLGLWHNFGDTTPIST
                     QRDILRTAFDLGITHFDLANNYGPPYGSAETNFGRLFKDDFRPYRDELLI"
     gene            530..1369
                     /locus_tag="VKJ77_22220"
     CDS             530..1369
                     /locus_tag="VKJ77_22220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HMC48048.1"
                     /translation="MDPLDKLRPVYNFLLTAGVTYGFDILMAILILLVGWWVSNRVAN
                     AVKRALGRTNADATFTPVMASLVQWAIRVVAIVAALGKFGVAAASILTVLGAAGLAIG
                     LALQGTLQNIAAGLMLLLLRPFKVGDYIEGAGATAGTVNEIGLFTTRLTKSDGVIMFV
                     PNSTIWANPVTNFTANDRRRVVLNVIIPEDQNIEESLASLRRIVETDPRIINDDKTKP
                     WIAVSDYTDTGVKLNVAVWTNRTDYATVQADLLRQIKPGIKPAAKPPAPGADAALDAP
                     AKA"
     gene            1403..1606
                     /locus_tag="VKJ77_22225"
     CDS             1403..1606
                     /locus_tag="VKJ77_22225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3185 family protein"
                     /protein_id="HMC48049.1"
                     /translation="MTKAISIALIVGGVVLLYFGGQSFHSLSNDVSRFFTGSPTNKTI
                     WLIAAGAVAMLAGLIGLAIPGKR"
     gene            complement(1625..2389)
                     /locus_tag="VKJ77_22230"
     CDS             complement(1625..2389)
                     /locus_tag="VKJ77_22230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HMC48050.1"
                     /translation="MPNQSKLEQVRALRENGYVVVPGLVTPERCEAMRTVARQQLVEA
                     AAPVEFEADLQYPGAPNSKDAPGGHTVRRLLDAYGRDPRFAAWATSPDVRGWMEVYFG
                     ETPTLSRAHHNCVMTKHPAYGSLTGWHRDVRYWNFERDDLVSAWVALGNETVENGALW
                     FVPMSHKLPFTSERFDKAKFFRSDLPENEVLIRSAVSPKLNAGDVVFFHCNTLHSAGK
                     NLTDQVKFSLVYTFRGASNLPLPGTRSASMEDVPLI"
     gene            2772..3131
                     /locus_tag="VKJ77_22235"
     CDS             2772..3131
                     /locus_tag="VKJ77_22235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48051.1"
                     /translation="MNIRFTNRLTRAAVRAARPAGRSVVRALRHHSARTQLLAGQFRN
                     THPVDGIRSWFHGFFSNLRLRAASRQAAFKALLRKPTQLRAPVAKLKLAPGVINTTSR
                     RPRRLSTSDGWFAFAVR"
BASE COUNT          664 a          935 c          901 g          647 t
ORIGIN      
        1 aatcagcaat tcgtcgcgat acggacggaa atcgtccttg aacagccgcc cgaaattcgt
       61 ctccgcgctg ccgtacggcg gcccgtagtt gttcgcgaga tcgaagtgcg taatgccgag
      121 atcgaacgcg gtgcgcagga tatcgcgctg cgtggagatc ggcgtggtgt cgccgaagtt
      181 gtgccaaaga cccagcgaca acgccggcaa cttcaggccg ctcttgccac aggtgcggta
      241 ggccatctgc gaatagcgtt cggaagctgc ttcgtaagcc atgacgaaat cctcgaattg
      301 gtgaagaaac aatggggtgt aagcacaggc tagcaacaat cgcgcgggac atgtcatctg
      361 acgtgcgccg agtccgtcat gttagcgaat cgcgcggact cgcgtcgggc ttgacccgaa
      421 agacttcaag gctatcccga tattcgggac atgaccaaat ggccagcaag gggaacgatt
      481 agggggcgga cccagcccaa ccctgttcat tcgaatgagg agaagtttca tggacccgct
      541 ggacaaacta cgccccgtct acaatttttt gctgacggcc ggcgtgacat atggcttcga
      601 catcctgatg gccatattga tattgctggt cggctggtgg gtttcgaatc gcgtggcgaa
      661 cgcggtgaaa cgcgcgctcg gccgcacgaa cgcggacgcc acgttcacgc ccgtgatggc
      721 aagcctggtg caatgggcga ttcgcgtggt cgccattgtt gcggcgctgg gcaaattcgg
      781 cgtcgcggcg gccagcatcc tgaccgtgct cggcgcggcc ggactggcta tcggcctcgc
      841 attgcaaggc acgttgcaga acattgcagc cggtttgatg ctgttgctgc tgcggccgtt
      901 caaggtcggc gattacattg aaggggctgg cgcgacggct ggaaccgtca acgaaatcgg
      961 cctgttcacc acccgtctga caaaaagcga cggcgtcatc atgttcgtgc cgaacagcac
     1021 aatctgggcg aacccggtca ccaacttcac cgcgaacgac cggcgccgcg tggtgctgaa
     1081 cgtgatcatc ccggaggatc aaaatatcga ggaatcgctg gcgtcgctgc gtcggattgt
     1141 ggaaacggat ccgcgcatca tcaacgacga caagaccaaa ccgtggattg ccgtctccga
     1201 ctacaccgat accggcgtga aactgaacgt cgccgtctgg acgaaccgga ccgattacgc
     1261 gaccgtgcag gccgatttgc tgcgccagat caaacccggc atcaagccag ccgcgaagcc
     1321 gcccgcgcct ggggctgatg cggcgctgga cgctccggcc aaggcctaat aagcttgccg
     1381 tccgcacatt gcagagattt tcatgaccaa ggcgatttcc attgcactga tcgtaggcgg
     1441 cgtcgtgctg ctgtatttcg gtggccagtc gttccattcg ctgagcaacg acgtctcgcg
     1501 tttcttcacc ggctcgccaa cgaacaagac aatctggctg atcgcagcag gcgcggtcgc
     1561 catgttggcc gggttaattg gactggcgat cccgggcaag cgctgacgcg ttcagacgta
     1621 cgcgttaaat aagcggcacg tcttccatcg acgccgaccg tgttcccggc aacggcaagt
     1681 tgctggcgcc acgaaaggtg tagaccagcg agaatttcac ctgatcggtg agattcttgc
     1741 ctgctgaatg cagcgtgttg cagtggaaaa acacgacgtc gccggcattc agtttcggcg
     1801 ataccgcgct gcgaatcagc acttcgttct cgggcaggtc ggaacggaag aacttggctt
     1861 tatcgaaacg ttcggacgtg aacggcaact tgtgcgacat cggcacgaac cacaacgcgc
     1921 cgttttcgac cgtctcgtta cccagcgcga cccacgccga caccaaatcg tcccgctcaa
     1981 agttccaata acgcacgtca cgatgccagc cggtcaggct gccgtaagca ggatgtttcg
     2041 tcatgacgca gttgtgatgc gcacgcgaaa gcgtcggtgt ctcgccgaaa tacacttcca
     2101 tccagccgcg cacatcgggc gacgtggccc aagcggcgaa tcgcggatcg cgcccgtatg
     2161 cgtcgagcaa gcgacgcacg gtatggccac cgggtgcgtc tttcgaattc ggcgcgccgg
     2221 ggtattgcag gtcggcttcg aactccaccg gcgccgccgc ttccaccaac tgctgccgcg
     2281 ccacggtgcg catggcttcg cagcgctccg gcgtgacgag gccgggcacc accacgtagc
     2341 cgttctcacg caacgcgcgg acttgttcca acttcgattg attcggcata tcgactcaca
     2401 gggaaagcat ctggccggct cgcttcatca ggcaaccatc ctgtaaggca gccggctaat
     2461 tagggcgaat acaccaattg taaatcgccc gagccgtcca gcgcttcgtc ctgcgggttt
     2521 ccagccgtcg aacacttgct cgaacacccg tgcgggaaaa tgcctacttc cggcagtaac
     2581 atttcttcta taacctgccg tcgtgcattg agagagccca tcgaaaatcc ctttcgatga
     2641 aaatctatta aataagtgcg cgcttcaggc tcgcaacttt tattgtgttc aatcgatcaa
     2701 actgttgaac gctttttttg atccgactaa tgtcgggttg cagccattgc gaacccgagc
     2761 ctgtgaaatc catgaatatc cgtttcacga atcgtcttac ccgtgccgcc gtccgcgctg
     2821 cacgtcctgc cggacgcagc gttgttcggg ccttacgcca tcattccgct cgcactcaat
     2881 tgctcgcagg acaattcagg aatacccacc ccgtcgatgg tattcgctcc tggtttcacg
     2941 gatttttttc gaatctgcga ttaagggcgg catcgcgaca ggccgcattt aaagcgctat
     3001 tgcgaaaacc aacgcaatta cgcgcgcccg tggctaaatt gaaattggcg cccggtgtaa
     3061 ttaatacgac aagccgtcgt ccgcgcaggc tttcgaccag cgacggatgg tttgcgtttg
     3121 ctgttcgctg attattcctg aagacgc
//
LOCUS       DATGBK010001589         2649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_249895, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001589 DATGBK010000000
VERSION     DATGBK010001589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2649
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249895"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..505
                     /locus_tag="VKJ77_22240"
     CDS             <1..505
                     /locus_tag="VKJ77_22240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC48052.1"
                     /translation="FGMDIIYSNRSRNREAEQRYRAQWRPLPELLSSADFVCVLVPLS
                     YATERLIGSAELGLMKPSAILINCSRGQVVDEAALIEHLRERRILGAGLDVFEREPLP
                     HDSPLLQLPNVVAVPHIGSATRQTRENMAMRAARNLIGALDGNLSSTCVNPEALEARS
                     SSRRLAG"
     gene            547..1476
                     /locus_tag="VKJ77_22245"
     CDS             547..1476
                     /locus_tag="VKJ77_22245"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006161377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HMC48053.1"
                     /translation="MTSVNRPRGVYSPVVTPFTKDLLPAYDRYVRHCRWLIEQDVGLA
                     VFGTNSEANSLGVSEKKKLLETLVGAQIPVDRLMPGTGCSALTDTVELTRHALSLGVN
                     HVLMLPPFYYKGVTDEGLFRSYAQIIERVGSAALRIYLYHIPPVSQVPLSLELIERLL
                     TEFPGVIAGVKDSSGDWSNTQAMLERFQPRGFDVFAGSETFLLATLRAGGAGCITATG
                     NVNPAAIVDLYRHWQSADADGRQTALDATRAVFAKFSMIPALKAAIGVYSNDPEWGVV
                     RPPLVDLTRAQCDALASALHEIGFSMPGIEVTA"
     gene            complement(1576..>2649)
                     /locus_tag="VKJ77_22250"
     CDS             complement(1576..>2649)
                     /locus_tag="VKJ77_22250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HMC48054.1"
                     /translation="DRHTAFSTRLVTARDYTVVRVTTADDQHGIGFCYSGSRAGMLVT
                     YAVRELFAPLLHGRSALDVEGLWRTMYEESLLQGRAGSVMRALSIIDIAMWDRNARAA
                     GLPLSRYLGGTSSATVPAYASGGYYIEGKTPEHLGEEMAGYVALGFRAVKMKVGRLDL
                     RGEEARIKAAREAIGDDVLLMLDANNAWSDVPTALEYMRRFEPFNPYWIEEPFSPDDI
                     ESHAQLSRRTPVTVATGEIEAGRWRHQELLDKRAAMILQSDAAVCGGISEWRRIAASA
                     AAVGVTMCPHWFHDLHVHLVASTSNARYVEFFPDDQVLNFRRLVDTQLEFADGRLTVP
                     TRPGLGFDFDEAALNEYALDDWA"
BASE COUNT          495 a          868 c          749 g          537 t
ORIGIN      
        1 tttcggcatg gacatcatct attccaatcg ctctcgcaat cgggaagccg agcaacgtta
       61 tcgcgcgcaa tggcggccgc tcccggaact gctgtcgagc gccgatttcg tctgcgtcct
      121 cgtcccgctt tcttacgcca cagagcgtct tatcgggagc gccgagctcg ggctcatgaa
      181 gccgtccgcc attctcatca actgttcgcg tggacaggtc gtcgacgaag ccgccctgat
      241 cgagcatttg cgtgaacgcc gcattctcgg cgcgggtctc gatgtattcg agcgcgagcc
      301 cttgccgcac gactcgccgc tgctgcaact acctaacgtg gtcgcggtgc cgcatatcgg
      361 ctctgctacg aggcaaacgc gcgagaacat ggccatgcgt gctgcgcgca atcttatcgg
      421 cgcactcgac ggcaatctct cctcgacctg tgtcaatccc gaagcgctcg aagcccgctc
      481 gtcttcccga cgtctcgctg gctgaatcgc gcgaaacacc cccgcttcaa tgaaaaggaa
      541 cacacgatga cttctgtcaa ccgaccccga ggcgtttatt cgcccgtggt cacgccgttc
      601 acaaaagacc ttcttcccgc ctacgatcgc tatgttcgtc attgccgatg gctcatcgaa
      661 caggatgtgg gactcgccgt gttcggcacc aattcggaag cgaattcgct tggggtcagc
      721 gagaaaaaga agctgctcga aacgctggtt ggcgcgcaaa ttccggtcga tcggctgatg
      781 ccgggcacgg gctgttcggc gctcacggac acggtggaac tgacgcgcca tgcgctgtcg
      841 cttggcgtca accatgtgct gatgctgccg ccgttctatt acaagggcgt caccgacgaa
      901 ggcctgtttc gcagctatgc gcagatcatc gagcgggtgg gttccgcagc actgcgcatt
      961 tatctgtatc acatcccgcc tgtgtcccag gtaccgctca gccttgagct gatcgaacga
     1021 ctgctgacgg agttcccggg tgtcatcgcc ggcgtgaagg acagttcagg cgactggagc
     1081 aacactcagg caatgctcga acgcttccaa ccgcgtggct tcgatgtttt cgccggcagc
     1141 gaaaccttcc tgctagccac attgcgcgcg ggcggcgctg gctgcatcac ggcaaccggc
     1201 aatgtcaatc cggcggctat cgtggatctt tatcgtcact ggcagtcggc tgacgccgat
     1261 ggccgccaga cagcactcga tgccacgcgt gcggtgttcg ccaagttttc gatgatccct
     1321 gcacttaaag ccgcgatcgg cgtttattcg aatgatcccg agtggggtgt cgtacgcccg
     1381 cccctcgttg atctgacaag agcccaatgc gacgcgctcg cctcggcact gcacgagatc
     1441 ggcttctcca tgcctgggat cgaagtaacg gcataaagca gaaaaaccgc cggctgcatg
     1501 cacaaccggc ggtaaaacgc ttagttttac ttacttattt attacgtcct atttacatcc
     1561 tatttacgcc ccctctcagg cccagtcgtc cagcgcgtat tcgtttagtg ctgcctcgtc
     1621 gaagtcgaag cccaggccgg gacgggtcgg caccgtcagc ctgccgtccg cgaattccag
     1681 ttgcgtatcc accagtcgac gaaaattcag cacctgatcg tcagggaaaa attcaacata
     1741 gcgcgcattg gacgtcgacg ccaccagatg cacgtgcaga tcgtgaaacc agtgcgggca
     1801 catcgtcaca cccacggccg cggccgacgc cgcgatccgt cgccattcac tgatcccccc
     1861 gcacactgct gcgtccgact gaaggatcat ggcggcgcgc ttgtcgagca gttcctgatg
     1921 acgccagcgt cccgcttcaa tctcgccggt cgcaaccgtc accggcgtgc gccggctcag
     1981 ttgcgcatgg ctctcgatgt cgtccggact gaacggctct tctatccagt aagggttgaa
     2041 cggctcaaac cgacgcatgt attccagcgc ggtcggaaca tcggaccagg cgttgttggc
     2101 atcgagcatc agtagcacgt cgtcgccaat cgcctcccgt gccgccttga tccgtgcttc
     2161 ctcaccgcgc aggtcaagcc gcccgacctt catcttcact gcgcgaaatc caagcgccac
     2221 gtagcccgcc atctcctcgc cgagatgctc cggcgtcttg ccctcgatgt agtagccgcc
     2281 gctggcgtag gccggcacgg ttgcgctcga cgttccgccg agatagcggc ttaacggcaa
     2341 gccggccgct cgcgcgttcc ggtcccacat ggcgatgtcg atgatcgaca gtgcccgcat
     2401 gaccgatccc gcgcgccctt gcagcagcga ctcctcgtac attgtgcgcc acaggccttc
     2461 gacatcgagg gcggatcgcc cgtgcaacag cggcgcaaac agttcgcgca cggcgtaggt
     2521 gaccagcatg cccgcgcgac tgccgctgta gcaaaatcct atgccgtgct ggtcatcggc
     2581 cgtggtgacg cgcacgaccg tgtagtcgcg ggcggtaacg agccgcgtcg aaaatgcagt
     2641 gtggcgatc
//
LOCUS       DATGBK010001590         1795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_18362, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001590 DATGBK010000000
VERSION     DATGBK010001590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18362"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..468
                     /locus_tag="VKJ77_22255"
     CDS             <1..468
                     /locus_tag="VKJ77_22255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC48055.1"
                     /translation="ALLKPLGVRVPLYPLKGYSLTTQVAPDSHAPHISITDFERKIVY
                     ARLGDRLRIAGMADVTGRQADVDPSRVATLRAESAAAFPDAGNFDEATVWCGLRPATP
                     HSTPIIDSTQYENLWLNLGQGALGFTLALASGRSIADLIARRRPAVPLDGFTL"
     gene            complement(481..>1795)
                     /locus_tag="VKJ77_22260"
     CDS             complement(481..>1795)
                     /locus_tag="VKJ77_22260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC48056.1"
                     /translation="GDRRVEDWSGLPSAVPLALIRPRDTSEVAAALEICARYAQPVVT
                     QGGLTGLVGGANLRGDEVALSLDRMNRIVEIDAVSGTMTVQAGTPLQVVQEAASSAGF
                     YFPLDLGARGSCSIGGNLATNAGGNRVIKYGMMRDQVLGIEAVLASGAVVGGLNKMIK
                     DNSGYDLRNLLIGSEGTLAVITRAVLRLRPKPTATATAWCGLPSFDAVTTLLRRAQAG
                     LAPGVSAFEVMWAGYHDTVLANLDNLRAPLDSPHPFYVLLESVGTDPVRHGEAFEEFL
                     AAMLEEGVVTDAALASNEAHAQAFWAIRDAPGEYQRFIPNHAAYDVSFSIAQVGDAAS
                     RCEAQLRARWPDATIMIYGHLGDGNIHIVVDVPGLPKHDHDAIDQVIYEVTRDFRGSI
                     SAEHGIGIKKKHFLHLTRSEADVASMRAIKQALDPARILNPGKIF"
BASE COUNT          332 a          611 c          532 g          320 t
ORIGIN      
        1 gcgctgctca agccactagg cgtgcgggtt ccgctttatc cattgaaggg ctatagcctg
       61 accacccagg tcgccccaga cagccacgcg ccgcacatca gcatcaccga cttcgaacgc
      121 aagattgtct atgcgcggct aggcgaccgg ctgaggatcg ccggcatggc agacgtcacc
      181 ggtcgtcaag ccgatgtcga tccgtctcgc gtcgccacgc tgcgcgccga atcggctgcg
      241 gcgtttccgg acgccggcaa tttcgatgaa gccactgtct ggtgcggcct gcgccctgcc
      301 acgccgcaca gcaccccgat catcgattcg acgcaatacg aaaacctctg gctcaacctc
      361 ggacaaggcg cacttggttt tacactcgcg ctggcaagcg gccgatcgat cgccgacctg
      421 atcgcacggc gccgtccggc agtgccactc gacggcttta cgctgtaagt aaaaccacac
      481 ctagaaaatc ttgccggggt tcaggatgcg cgcggggtcc agtgcttgct tgatcgcgcg
      541 catcgacgct acatccgcct ccgaacgcgt aaggtgcagg aagtgtttct tcttgatccc
      601 gatcccatgc tccgcggaga tcgatccccg gaagtctctc gtcacctcat agatgacctg
      661 gtcgatcgca tcgtgatcgt gcttcggcag accgggcacg tccaccacga tgtggatatt
      721 cccatcgcca agatgaccgt agatcatgat cgtggcgtcg ggccatcggg cccgcagttg
      781 cgcctcgcag cgtgacgcgg cgtcgcccac ttgtgcaatg gaaaagctta catcgtaagc
      841 cgcgtgattc gggatgaagc gttgatattc gccgggtgcg tcgcggattg cccagaacgc
      901 ctgcgcatgc gcctcgttcg aagccagcgc ggcgtcggtc actacgccct cctcaagcat
      961 cgcagccagg aactcctcga atgcctcgcc atgccggacg ggatcggttc ccacactctc
     1021 cagcaacaca tagaacggat gcggcgagtc aagcggagca cgcaaattgt cgaggttggc
     1081 aagcacggta tcgtgataac ccgcccacat gacctcgaac gccgacacgc ctggagccag
     1141 ccctgcctga gcgcgccgca gcagcgtggt gacggcgtcg aaactgggca atccacacca
     1201 agcggtggcc gttgccgtgg gcttagggcg cagacgcagc accgcgcggg tgatgaccgc
     1261 gagcgtgcct tcgctgccga tcagcaagtt gcgcagatcg tagccgctgt tgtccttgat
     1321 catcttgttg aggccgccca cgaccgcgcc gctcgccagt acggcctcga tgcccagcac
     1381 ctggtcgcgc atcatgccgt acttgatgac ccgattgccg cccgcgttgg tggcgagatt
     1441 gccgccgatg gaacaactgc cgcgcgcccc caggtctagc ggaaaataga atccggccga
     1501 gctggccgct tcctgtacca cttgcagcgg cgtgccggcc tgaaccgtca tggtgcccga
     1561 cacagcgtcg atctccacaa tccggttcat gcgatcaagg ctcagtgcga cctcgtcgcc
     1621 acgcagattg gcgccgccga ccagccctgt caggccgcct tgcgtgacaa ccggctgggc
     1681 gtagcgagcg caaatctcga gcgccgccgc gacctcgctg gtatcgcgtg gcctgatgag
     1741 cgccagcggc accgcgctcg gcagtccgct ccagtcctcg acacggcgat cgcca
//
LOCUS       DATGBK010001591         2785 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_249932, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001591 DATGBK010000000
VERSION     DATGBK010001591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2785
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249932"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..517
                     /locus_tag="VKJ77_22265"
     CDS             41..517
                     /locus_tag="VKJ77_22265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010101442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2244 domain-containing protein"
                     /protein_id="HMC48057.1"
                     /translation="MQATDLPKDAEPVVKDWLIKRNCSASPRQFVAFYVSLALFSLLI
                     ASLLMWAGAWLVLPFTGIELLAVGVAFVIYARHAVDYERILLFHDRLLIERMDAETLT
                     QMEFNPRWVRVEPGATPRDPVKLVSRGESVPIGIHLAQHRRKQFAVELRMWLRRCG"
     gene            701..2341
                     /gene="coxB"
                     /locus_tag="VKJ77_22270"
     CDS             701..2341
                     /gene="coxB"
                     /locus_tag="VKJ77_22270"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HMC48058.1"
                     /translation="MEILGKEAMKTIKRALSGVLALSGLLFAGAALAVSDVPGGPGVN
                     ELNFQTPVTKIAEELYSLHTFMLIICTVIFLGVFGVMFYSVLMHRKSKGHKASNFHES
                     TTVEIIWTIVPFVIVVLMALPATKTVVAMKDTTNADLTVKVTGYQWKWGYDYVKGPGE
                     GINFLSTLSTPRSQTNGQVPIGELYLQEVDNPLVVPVDKKIRIITTANDVVHSWYVPA
                     FGVKQDAIPGFVRDTWFKAEKVGTYRGYCTELCGKEHAFMPVVVEVLSADDYAAWVDG
                     QKKKMAASADDPNKTYTMDELKARGAQVYTSNCAVCHQPTGKGAGQFPALDGSKIANG
                     PIAGHVSIVLKGKGAMPNWGATLNDVEIASVITYERNTWGNHTGDILQPLQVADARNG
                     KMPAGGDHLAGAGAAAGSDAAASGSAAGSDAASAAPAASAAASDASAPAASLPASVYF
                     ETGKDALPADAASAIQTAADYAKAHPDAKLTLSGFTDATGSAAKNAELAKTRAQAVRD
                     ALKAAGVAEDHIILKKPETITGGADPREARRVEISPAA"
     gene            2432..>2785
                     /locus_tag="VKJ77_22275"
     CDS             2432..>2785
                     /locus_tag="VKJ77_22275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010090602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HMC48059.1"
                     /translation="MSSIGHDVTAGHEHGHAHDHGHDHDEHAHELPYGWRRWLFATNH
                     KDIGTLYLLFSFIMFLSGGVMALMIRAELFEPGLQIMRPEFFNQLTTMHGLIMVFGAI
                     MPAFVGFANWQIPLQI"
BASE COUNT          571 a          789 c          904 g          521 t
ORIGIN      
        1 acgcagcgcg ggtgagacaa atctgacgcg ggagacggcg atgcaagcaa ctgatctgcc
       61 gaaggacgcc gaaccggtcg taaaggactg gttgatcaag cgaaactgtt ctgcctcacc
      121 gcggcaattc gtggccttct acgtgtcgct tgcgctgttt tcgttgctga tcgcgagttt
      181 gctgatgtgg gcgggcgctt ggctggtgct gccttttacg ggtatcgagt tgctggcggt
      241 cggtgtcgcg ttcgtcattt atgcgcggca tgctgtcgac tacgagcgga ttctactgtt
      301 tcacgaccgg ctgctgatcg aacggatgga tgcagaaacg ctcacgcaga tggagttcaa
      361 tccgcgctgg gtgagagtcg aaccgggggc aacgccgaga gatccggtga agctggtgtc
      421 gcggggggag tcggtgccga tcgggataca tctggcgcag catcgtcgca agcagttcgc
      481 cgtcgagttg cggatgtggc tgaggcgctg cggctgacag tccgaaaatg cgccggctag
      541 gtgcactcag gatgtccgga gggcagcgct ccgcaaaaag gcaagaagca gggaagtacg
      601 tagcaagcgg cacacgcatc gacacgcgcc gccgagtaga tcgtttccag gggaggcgat
      661 gcatgagtcg gacgggtgca tacgggggtc gagggtctga atggaaattt tgggtaagga
      721 agctatgaaa acaatcaagc gagccctctc gggcgtgctg gcgttaagcg gactcctgtt
      781 cgccggcgca gccctggcgg tcagtgacgt tcccggcggt cctggagtga atgaactcaa
      841 cttccagacg ccggtgacca agatcgccga ggagctctac agcctccata cgttcatgct
      901 gatcatctgc acggtgattt tcctcggcgt gttcggtgtg atgttctatt cggtcctgat
      961 gcaccgcaag tcgaagggac acaaggcctc caacttccac gaaagcacca ccgtcgaaat
     1021 catctggacg atcgtcccgt ttgtgatcgt cgtgttgatg gcgctgccgg cgacgaagac
     1081 cgtggtcgcg atgaaagaca ccaccaacgc tgacctgacc gtgaaagtga ccggttatca
     1141 gtggaagtgg ggctacgact atgtgaaagg gccgggcgaa ggcatcaact tcttgtccac
     1201 gctgtccacg ccgcgtagcc agacgaacgg ccaggtacct attggcgagc tttatctgca
     1261 ggaagtcgac aacccgctcg tggttccggt cgacaagaaa atccgcatca tcaccacggc
     1321 caacgacgtc gtgcactcgt ggtacgtgcc ggcattcggc gtgaaacagg atgcaatccc
     1381 cggcttcgtg cgcgacacgt ggttcaaggc tgagaaggtc ggcacgtatc gcggctactg
     1441 caccgagttg tgcggcaagg aacacgcgtt catgccggtc gtggtcgaag ttttatcggc
     1501 tgacgactac gcggcatggg tcgatggcca gaagaagaaa atggccgcga gcgcggacga
     1561 tccgaacaag acctacacaa tggacgaact gaaggcacgc ggcgcccagg tctatacgtc
     1621 gaattgcgcg gtctgccacc agccgaccgg caagggcgca ggtcaattcc cggcgctcga
     1681 tggcagcaag atcgccaatg gcccgatcgc gggccacgtg agcattgtgc tgaagggcaa
     1741 gggcgcgatg ccgaattggg gcgcgacgct caatgacgtc gagattgctt cggtgatcac
     1801 gtacgaacgc aatacctggg gcaaccacac gggcgacatc ctgcaacctt tgcaagtcgc
     1861 ggacgcacgt aacggcaaga tgcccgcagg cggcgatcac ttggcgggcg caggcgctgc
     1921 ggccggttcg gacgcagcgg ccagcggttc ggcggctgga tcggacgcag caagcgcggc
     1981 tccggcggca tctgctgccg cgtcggacgc ctcggctccg gcggcttcgc tgccggcgag
     2041 cgtgtatttc gagacgggca aggatgcatt gcctgccgac gccgccagcg cgatccagac
     2101 tgctgccgac tatgcgaaag cgcatccgga cgcgaagctg acgctgtcag gtttcaccga
     2161 cgcaactggc tcggccgcca agaacgccga actcgcgaag acgcgagctc aggccgttcg
     2221 cgacgcgctg aaggccgcgg gcgtggcgga agaccacatc attttgaaga agccggaaac
     2281 gatcacgggc ggtgctgacc cgagagaagc acggcgcgta gagatcagtc cggctgcctg
     2341 acggtcgtac ccaaacggct agcttccttc tgaaaggaag ctagcgtagc gtatgcccca
     2401 agtgccgcag tattcgcttt aggagattgt catgtctagc atcggacacg atgtaaccgc
     2461 gggccacgaa catggccacg ctcatgatca cggtcatgac cacgacgagc acgcgcacga
     2521 actgccgtat ggctggcgtc gctggctgtt cgcgaccaac cacaaggaca ttggtacctt
     2581 gtacttgttg ttctcgttca tcatgttcct gtcagggggc gtgatggcgc tcatgatccg
     2641 cgccgagctc ttcgagccgg gcctgcagat catgcgtccc gagttcttca accagttgac
     2701 caccatgcac ggcctgatca tggtgttcgg cgcgatcatg ccggcgttcg tcggtttcgc
     2761 aaactggcag attccgctgc agatc
//
LOCUS       DATGBK010001592         2507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_296468, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001592 DATGBK010000000
VERSION     DATGBK010001592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296468"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1579)
                     /gene="ptsP"
                     /locus_tag="VKJ77_22280"
     CDS             complement(<1..1579)
                     /gene="ptsP"
                     /locus_tag="VKJ77_22280"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HMC48060.1"
                     /translation="MSFTLHGIPVSRGIAIGRAYLIAAAALDVDHYLVEPDRIDSEIE
                     RFHAAQAQVHAELDALRDDLAADAPSEMGAFINVHSMILNDAMLVHETIDLVRTRRYN
                     VEWALTEQLEILSRHFDDIEDEYLRERKADIQQVVERVLKALAGAPSTATLVVDGAAT
                     NGHNDMIVVAHDIAPADMLQFKTQAFKGFVTDLGGRTSHTAIVARSLGIPASVGVQQA
                     STLIRQNDLIIVDGDHGIVIVDPAPIVLEEYSYRQSEKVLEQRKLQRLKFSPTQTLDG
                     TKIDLCANIELPDDAKTALDAGAMGVGLFRSEFLFMNHKDELPEEEEQFEAYRRAIEL
                     MKGRPVTIRTIDVGADKPLESMSGGDGYESAQNPALGLRAIRWSLSEPQMFMTQLRAI
                     LRASAFGRAKTLIPMLAHAQEIDQTLDLIHEAKRQLDDAGIEYDRNIQVGAMIEIPAA
                     AIAVRLFLKRLDFLSIGTNDLIQYTLAIDRADNAVAHLYDPLHPAVLHLIAFTLREAK
                     VAGVPVSVCGEMAGDPSV"
     gene            complement(1837..2106)
                     /locus_tag="VKJ77_22285"
     CDS             complement(1837..2106)
                     /locus_tag="VKJ77_22285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010101417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HMC48061.1"
                     /translation="MLQQETTIVNKLGLHARASAKLTQLAGNFQCEIWMSRNGRRINA
                     KSIMGVMMLAAGIGSTVTIETEGSDEAEAMKGILALIADKFGEGQ"
     gene            complement(2218..>2507)
                     /locus_tag="VKJ77_22290"
     CDS             complement(2218..>2507)
                     /locus_tag="VKJ77_22290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HMC48062.1"
                     /translation="GATPANIAQSLASSSVRVLAGVNLPMLVRAVCYRTTPLDTLAEK
                     SLQGGSKGIQELDASTPANPCAMASAAAAAAASCAVGAAATSCMPAKAASH"
BASE COUNT          463 a          776 c          736 g          532 t
ORIGIN      
        1 tcacggaagg gtctccagcc atttcaccgc acacggacac cgggacgccc gcgaccttcg
       61 cttcacgcag cgtgaacgcg atcaggtgca acaccgccgg atgcagcggg tcgtaaagat
      121 gcgcgacggc gttatcggcg cgatcgattg ccagcgtgta ctggatcagg tcgttggtcc
      181 cgatcgacag gaaatccagc cgcttcagga acagccgcac ggcaatcgcg gccgctggaa
      241 tctcgatcat cgcgccgacc tgaatgttgc gatcgtactc aatacccgcg tcgtcaagct
      301 gacgcttcgc ttcgtggatc aggtcgagcg tctggtcaat ttcctgcgca tgcgcaagca
      361 tagggatcag ggtcttcgcc cggccaaacg ccgatgcccg caagattgcc cgcaattgcg
      421 tcatgaacat ctgcggctcg gacaggctcc agcggatcgc ccgcaaaccc agcgccgggt
      481 tttgcgcgct ctcgtaaccg tcgccgccgc tcatggattc gagcggtttg tccgcgccca
      541 cgtcgatcgt gcgaatggtg accggccggc ccttcatcaa ctcgatcgcg cgccgatagg
      601 cctcgaattg ttcttcctct tccggcaatt cgtccttgtg attcatgaac aggaactcgc
      661 tgcgaaacag gcccacaccc attgcgcccg cgtcgagcgc cgtcttggcg tcgtcgggta
      721 attcgatgtt cgcgcacaag tcgatcttgg tgccgtccaa cgtttgcgtc ggcgagaact
      781 tgaggcgctg cagcttgcgc tgctccaaca ccttttcgct ctgccgatac gaatactctt
      841 ccagcacgat cggcgccgga tcgacgatca caatgccgtg atccccatcg acaatgatca
      901 agtcgttctg ccggatcagc gtgctggcct gctgcacgcc gaccgatgcg ggaatgccga
      961 gactgcgggc aacgatcgcc gtgtgcgaag tccggccgcc gaggtccgtc acgaaaccct
     1021 tgaacgcttg agtcttgaac tgcagcatgt ccgcaggcgc tatgtcgtgg gcgaccacga
     1081 tcatgtcgtt gtggccgttg gtcgccgcgc catccactac gagcgtcgcc gtggagggtg
     1141 cgccggccag cgccttcagc acgcgctcga ccacttgttg aatatcggct ttgcgctcgc
     1201 gcaaatattc gtcttcgata tcgtcgaaat ggcggctcag gatttcaagc tgctcggtca
     1261 gcgcccattc cacgttgtag cggcgcgtac gcacgagatc gatggtttcg tgaacgagca
     1321 tggcgtcgtt caggatcatg gagtggacgt tgataaacgc acccatttcg ctgggggcgt
     1381 ccgcagcgag atcgtcgcgc agggcgtcca gctcagcgtg cacctgcgct tgcgctgcgt
     1441 gaaagcgttc aatttcactg tcgatgcgat ccggttcgac cagatagtga tcgacatcga
     1501 gtgcagccgc cgcgatcaga tacgcgcggc cgatggcgat accgcgcgaa acgggaattc
     1561 catgcagcgt gaacgacacg cgcacctctc tctagttatg ggtggctcac ggttttgtcg
     1621 accaccggct ggcgatgcga tccgcgcacc attataaatt cgaacgcgat ttgacactct
     1681 ttgcggtgca gcaagtttct gtcacaaaat gacgcagtta attgcgctat gtgtcagcgt
     1741 cacggatcag cgtcaaccat gtcaacgccc tgtccacgga cacaaaaaag ccgcgtcaat
     1801 gcgcggcttc ttctcagtgc tgcaggcagg acaacgtcat tgtccttcgc caaatttatc
     1861 ggcgatgagt gcaaggatgc ccttcatcgc ttcggcttcg tcagagcctt cggtttcgat
     1921 tgtcaccgtg ctgccgattc ccgccgcgag catcatcacg cccatgatgc ttttcgcgtt
     1981 gatccgacgg ccgttgcggc tcatccagat ctcgcattga aagtttcccg ccagttgtgt
     2041 gagcttggcc gaagcacgcg cgtgcagccc cagcttgttc acgatagttg tttcctgttg
     2101 cagcatgatg ctccgggcgc taggtgagag ggctgacgcg atgcagctgg gtcaatgctt
     2161 tttaacggtt tacttaacgt gtgccagcgg gacaactcaa ctccgctcag gcgcgactca
     2221 gtgacttgcc gccttggcgg gcatgcaact ggtcgcagcc gcgcccacag cgcagctagc
     2281 agcggccgca gctgcggcgc tggccatggc gcaagggttg gcgggcgtag acgcatccag
     2341 ttcctgaatg cccttcgatc ccccttgcag cgacttttca gccagcgtgt cgagcggcgt
     2401 ggtcctgtag cagactgcgc gcacgagcat gggcagattg acgccggcga gcacgcgaac
     2461 gctgctgctt gccaggcttt gcgcgatatt cgcaggcgtt gcgccga
//
LOCUS       DATGBK010001593         1965 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_88023, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001593 DATGBK010000000
VERSION     DATGBK010001593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88023"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..804)
                     /locus_tag="VKJ77_22295"
     CDS             complement(<1..804)
                     /locus_tag="VKJ77_22295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006298423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HMC48063.1"
                     /translation="MATAREYQLENTRNIGIAAHIDAGKTTATERILFYTGRTHKIGE
                     VHDGAATMDWMVQEQERGITITSAATACTWRDTRINIIDTPGHVDFTVEVERSLRVLD
                     GLVALFDSVAAVQPQSETVWRQANKYKVPRIIFVNKMDRMGADFFNCVAKIRERLGAR
                     AVPIQVPIGAEADFLGVVDLFTMKKIIYTDDAGSVMEIDESPTGELLETAKKWRQELI
                     EAIAEQDDELLEMFFDEKEIPIERLHKALRKATIAGEVLPMLCGSAFKNK"
     gene            complement(811..1281)
                     /gene="rpsG"
                     /locus_tag="VKJ77_22300"
     CDS             complement(811..1281)
                     /gene="rpsG"
                     /locus_tag="VKJ77_22300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013054923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HMC48064.1"
                     /translation="MPRKGPVPKRPILPDPKFNSKVLARFINKVMLAGKKSTAEKITY
                     EALTIIEAKMGRDPMDVFTQALGNAMPLVEVRPRRVGGATYQVPMEVRPDRRQAMAMR
                     WLINFARKRPGRSMEEKLAAELMDAANNLGNAIKKREDTHKMAEANKAFAHYRW"
     gene            complement(1297..1737)
                     /gene="rpsL"
                     /locus_tag="VKJ77_22305"
     CDS             complement(1297..1737)
                     /gene="rpsL"
                     /locus_tag="VKJ77_22305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003225781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HMC48065.1"
                     /translation="MPTISQLVRKGREKQQKKVKTPAFRVVQTGPKPGHPDLPLRAFE
                     VAGNPQRRGVCTQVKTITPKKPNSALRKVARVRLTNGEEVTAYIPGIGHNLQEHSVVL
                     IRGGRVKDLPGVRYHIIRGTLDTSGAANRKQGRSKYGAKRNAKK"
BASE COUNT          365 a          562 c          585 g          453 t
ORIGIN      
        1 cttgttcttg aatgccgaac cgcagagcat cggcagcact tcaccggcga tggtggcttt
       61 gcgaagcgcc ttatgcagcc gctcgatcgg aatttctttt tcgtcgaaga acatttcaag
      121 cagctcgtca tcttgttcgg cgatcgcttc gatcagttct tgacgccact ttttggccgt
      181 ttcgagcagt tcgcccgtcg gagactcatc gatctccatc acggagcccg catcatcggt
      241 atagatgatc ttcttcatcg tgaagagatc gaccacaccc aggaaatccg cttcagcgcc
      301 aatcggcacc tgaatcggaa cggcgcgcgc gcctaagcgc tcgcgaatct tcgcaacgca
      361 attaaagaaa tcggcgccca tgcgatccat cttgttaacg aagatgatgc gcggcacttt
      421 atatttgttg gcttggcgcc agacggtttc ggactgcggc tgcacggcgg caaccgagtc
      481 gaacaacgcg accaggccgt ccaggacacg cagcgagcgt tcgacctcaa cggtgaagtc
      541 cacgtggcct ggcgtatcga taatattaat acgcgtgtcg cgccacgtgc aggccgtagc
      601 agccgacgtg atcgtgatgc cgcgttcttg ttcttgaacc atccagtcca tcgtggctgc
      661 gccatcgtgg acttcgccga ttttatgcgt gcggccggtg taaaaaagaa tacgctccgt
      721 tgcggtcgtc ttgccggcat caatatgcgc ggcaatgccg atgttacgag tattctcgag
      781 ttggtattcg cgtgcggttg ccataaaaaa ttaccagcgg tagtgagcga aagccttatt
      841 tgcttcagcc attttgtgcg tgtcttcgcg ctttttgatt gcgttgccga ggttgttcgc
      901 ggcatccatc agctcggcgg cgagcttctc ttccatcgaa cgaccgggac gcttgcgcgc
      961 aaaattgatc agccagcgca tcgccatcgc ctgacggcga tcgggacgca cttccatcgg
     1021 aacctgatag gtcgcaccgc caacgcggcg cgggcgcact tcgacgagcg gcattgcatt
     1081 gccgagcgct tgggtgaaca catccatcgg gtcgcggccc atcttcgctt cgatgatcgt
     1141 cagggcttca taggtgatct tttcggcggt cgatttctta ccggcgagca tgaccttatt
     1201 gatgaagcgc gcgagcactt tcgaattgaa cttgggatcg ggcagaatcg ggcgtttcgg
     1261 aacggggcct ttgcgcggca taaaactacg gtgtccttac ttctttgcgt tgcgcttggc
     1321 gccgtatttc gagcggcctt gcttgcggtt tgcggcgccc gaagtgtcga gcgtgccgcg
     1381 gatgatgtga tagcgcacgc cggggagatc cttaacgcgt ccgccacgga tcaggacaac
     1441 ggaatgctct tgaagattgt ggccgatgcc ggggatgtag gccgtcactt cttcgccgtt
     1501 ggttaaacgg acgcgggcca ctttgcgcag cgccgagttc ggcttcttgg gggtaatcgt
     1561 cttgacttgc gtgcacacgc cgcgacgctg cggattgccc gcaacctcga atgcgcgaag
     1621 cggcaggtcg ggatgacccg gtttcggtcc ggtctggacg acacggaacg cgggggtttt
     1681 gacctttttc tgctgcttct cgcggccctt acggaccagc tggctaatcg tcggcactca
     1741 aatcctcaaa atccacacac aaatgcggcc tcaccgtcgg tgggccggaa cccaaggatt
     1801 atagcaagcc cgggctagag agtcaacgcg aggcgcagtg gacttgcgcc cgctcccttt
     1861 acgagggaat cgccttgggc gggcgggcgg ccgtcgggac ccgccggctg gctcacttgc
     1921 caggcgcgcc tactttgggc ggcattagtg gattggtttt cagga
//
LOCUS       DATGBK010001594         1917 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_157606, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001594 DATGBK010000000
VERSION     DATGBK010001594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157606"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..1121)
                     /locus_tag="VKJ77_22310"
     CDS             complement(51..1121)
                     /locus_tag="VKJ77_22310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC48066.1"
                     /translation="MASIDLDSPAVASGDTPSQKKRNAGEIAGLKSYGLLYGSSPVMM
                     ELYSQIERVAATDATALIIGESGTGKELIARTIHDQSARREAPFVAVNCGAIPDNLIE
                     PELFGHEKGSFTGAVQGRLGYFEHANGGTLFLDEVTEMSPVRQVKLLRALETGTFFRV
                     GGNDLIHSDVRVIAATNRDPIVAVKENGLREDLMYRLAVFPLRAPPLRERDTDREFLA
                     QHFLSEMNAQEGTNKSFSKRALDMLRTYSWPGNVRELKNTVYRAFILAEKTVEIAHPH
                     LASRVKKPVTQGDAMNVWVGTPLADAQKQIILGTLKHCGGDKRRAAKALGVSLKTLYN
                     RLGTYENEGGDGDSSTPTGADN"
     gene            1635..>1917
                     /locus_tag="VKJ77_22315"
     CDS             1635..>1917
                     /locus_tag="VKJ77_22315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48067.1"
                     /translation="MEDSLHFDIPVQSRVRPVRRARTPQRAAERPELLTAEPINLYHW
                     AAVALVTALMCVVMACAAGTPTLARAASVTSVVFAALGSVLVLGAMLRAM"
BASE COUNT          342 a          572 c          581 g          422 t
ORIGIN      
        1 gagtcgcatc agaactcatc gcctcatcga ttttatgagt agcggccggt ttagttatcc
       61 gcgcctgtcg gcgttgacga gtccccgtcg ccgccttcgt tctcgtaagt gccgaggcgg
      121 ttatacagcg tcttgaggct cacgccgagc gccttggcgg cgcggcgctt gtctcccccg
      181 caatgcttaa gggtgccgag gataatttgt ttctgcgcat cggcgagcgg cgtaccgacc
      241 cacacgttca tcgcatcgcc ctgcgtgacc ggctttttaa cccgcgatgc caggtgcgga
      301 tgcgcgatct ccacggtctt ctcagccaaa atgaacgcgc gatacaccgt gttctttaac
      361 tcgcgcacat tgcccggcca cgagtatgtg cgcagcatgt cgagcgcgcg tttgctgaag
      421 gacttgttcg tcccttcttg cgcgttcatc tcggagagga aatgctgcgc gagaaattca
      481 cggtcggtat cgcgttcacg cagaggcggc gcgcgcagcg gaaacacggc gagccgatac
      541 atcaggtcct ctcgcaagcc gttctccttc accgccacga tagggtcacg attggtcgcc
      601 gcgatcacgc ggacgtcgga gtgaatcagg tcattgccgc ccacgcgaaa gaacgtgcct
      661 gtttccagcg cacgcagcaa cttgacttgt cgaaccggcg acatctcggt cacttcgtcg
      721 aggaacagcg tgccgccgtt tgcatgctcg aagtaaccga ggcgtccctg cactgcgccg
      781 gtgaagctgc ctttctcgtg gccgaagagt tcgggttcga tgaggttatc ggggatcgcg
      841 ccgcaattca cggcgacgaa cggggcttcg cggcgggcac tctgatcgtg gatcgtgcgg
      901 gcaatcagtt ccttgccggt ccccgattcg ccgatgatca acgcggtggc atcggttgcg
      961 gccacgcgtt cgatctgcga gtacaactcc atcatcacgg gcgatgaacc gtacagaagt
     1021 ccgtacgatt tcagtccggc aatttcacct gcgttgcgtt tcttttgcga tggcgtgtcg
     1081 ccggaggcga cggccggcga gtccagatcg attgacgcca tgagtctctt gtcctgcaaa
     1141 tgttatttgg gcgacagctc ggccgctggg gaagacgagg cagcgccaca gggccgaggc
     1201 ggtcaccgcc agtcggatgg caggcccgtt gtgactaccg ctcgggtggg cgaagcatcg
     1261 ttcgacgggc accggttccg tcatttcggg aaccagcgct cgcatgcggc ttatctcata
     1321 aactgtattt aaccatccgt atcgacttag cgccaatgtg ctttgcatgg gctttgtcct
     1381 ttgcaacgta attaaacata ttaatctcca tacgaattgg aaacgctgcc cgcgagccgg
     1441 aaagcttcac cgatatcgcc agaaaattcc ccatgccgag cgtaattatt acgcgtttga
     1501 cgtggctgcg ggccgctgcc ttttgcacgc gatcgacggt gatcgcgttg acgggttgcg
     1561 ccttgaccgg ggtggcacga aacctgcgct aggggtggca tctgcaatga aaggccggat
     1621 tccggcatga agccatggaa gattcccttc acttcgacat tcccgtgcaa tcgcgtgtgc
     1681 gccccgtccg acgggctcgt acaccgcagc gcgcggccga gcgtccggaa ctactgacgg
     1741 ccgaaccgat caacctttat cactgggccg ctgtcgcgct ggtgactgcg ttgatgtgcg
     1801 tggtcatggc ttgcgctgcc ggcacaccga cgctcgcgcg ggcagcgagc gttaccagtg
     1861 ttgtgtttgc cgcactcggt agtgtgcttg tgctgggcgc catgctacgt gcgatgc
//
LOCUS       DATGBK010001595        10464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_65404, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001595 DATGBK010000000
VERSION     DATGBK010001595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 10464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10464
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65404"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1158
                     /locus_tag="VKJ77_22320"
     CDS             <1..1158
                     /locus_tag="VKJ77_22320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006494110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC48068.1"
                     /translation="RYDLSRLVERDEADIDIVRMEASGCYGRNCADDVAGDALLLSRA
                     MGQPVRVQLSRADEHQWEPKGTAQVVDVTGTVSRSGDTLGYTFATRYPSNDAPMLALL
                     LTGATPAEPRVFEMGDRTAVTPYTFAHRRFVCHDLAPLVRASWFRGVSALPNSFAHDV
                     FIDELAFETGADPLAFRLRHLKDERAVALLEAVAERAGWQARGGRGPARDTGERVLQG
                     RGVAYARYVHSRFPGFGAAWSAWIVDLEVDTVSGEIRIKRVTVGQDTGTVINPDGVRH
                     QIHGNVIQTLSRTMKERVRFTDGLVASKEWGSYPILTFPELPPVDVVLVDRQGEPPLG
                     AGESASLPGAPAISNALFDATGVRFRAPPFTPDAVRATLQAAATVAPAEHR"
     gene            complement(1202..1672)
                     /locus_tag="VKJ77_22325"
     CDS             complement(1202..1672)
                     /locus_tag="VKJ77_22325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011614798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HMC48069.1"
                     /translation="MSKKPSAPPEVPGSEEYHFSQQIGHLLRRAYQRHVAIFQTAIPD
                     SDLTAAQFVTLCAVKEQQSCSLNDIVKATAIDQATIRGVVERLKTRSLIVVSPDPLDG
                     RKLLVRTTPEGLALIDQTVPFAKQVSEQTFGGLNPAERVAIVYLLRAMTRAEDN"
     gene            1891..2235
                     /locus_tag="VKJ77_22330"
     CDS             1891..2235
                     /locus_tag="VKJ77_22330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013800422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HMC48070.1"
                     /translation="MTPEKEIRWVGSAYDDLLEFPEEPRRDAGFQLSKVQSGLDPENW
                     KPFGEVGAGAREIRIRDSSGIFRVMYVAKFEEAVYVLHCFQKKTQTTSKRDKEIAEAR
                     YRAVANARKINQ"
     gene            2232..2564
                     /locus_tag="VKJ77_22335"
     CDS             2232..2564
                     /locus_tag="VKJ77_22335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HMC48071.1"
                     /translation="MTIDTEIRHVTKPGANLFRELGFSAEEAKLLQAASRKQINDTQQ
                     LKEQLMSELAEWIEQHHLKQAEAAKILMVSRPRVSDVVNKKTAKFTIDTLVEMLSRVG
                     KSVRLAIG"
     gene            complement(2591..4087)
                     /locus_tag="VKJ77_22340"
     CDS             complement(2591..4087)
                     /locus_tag="VKJ77_22340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006750365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HMC48072.1"
                     /translation="MRASMLSDWLAQRIERTGGLPIYRQLYGLLQQAILSRELPAGTK
                     VPSSRLLASELGLGRNTVTQVYEQLALEGYVWSATGQGTFVSDSAPDEIVGAESAARD
                     AAPAEPRVLSARGARLLQGAGVSQRQGGAFMPGVPDVSRFPAAVWSRLQSKYWRRLPP
                     DLLTYAPGGGLPKLRQVLADYLRTSRSVRCTPEQIIVTTGIHQSIDLAVRLLSDSGDV
                     IWTEDPCYWGVRSVLQVSGLSLKAIPVDAEGINPSADDLADPPKLMLVTPSHQYPLGM
                     VMSLARRRMLLEFARQNGCWIIEDDYDSEFRYGSRPLASLQGLDTAGQVIYVGSFGKT
                     LFPGLRIGYIVVPEGLSTSFATASAELYREGQLLQQAVLAEFIAEGHFTSHIRRMRGI
                     YGQRRQILLDTIRKRYGDALQIVGGDAGLHLVLRLPDGVDDREVAKAALAVNIVVRPL
                     SGYFLRPDAGVSGLLIGYGCVAEEEIEPAFEKLAAVLDPALGDRVRGS"
     gene            4243..5526
                     /gene="gabT"
                     /locus_tag="VKJ77_22345"
     CDS             4243..5526
                     /gene="gabT"
                     /locus_tag="VKJ77_22345"
                     /EC_number="2.6.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014900984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003867 - 4-aminobutyrate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009450 - gamma-aminobutyric acid catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HMC48073.1"
                     /translation="MKNADLKARKDAATPRGVGVMCDFYAERAENAELWDVEGRRFID
                     FAAGIAVCNTGHRHPKIVAAMRAQLERFTHTAYQIVPYESYVSLAEKIIARAPGDYAK
                     KAAFFTTGAEAVENAIKIARAATGRPGVIAFTGGFHGRTFMGMALTGKVAPYKIGFGP
                     FPSDVFHAPYPNPLRGITTEDSLRAIEHLFAADIEAKRVAAIIFEPVQGEGGFYQAPV
                     EFVRALRKLCDTHGILLIADEVQTGFARTGKLFAMQHYDVSPDLTTIAKSLAGGMPLS
                     GVVGRADVMDSVAPGGLGGTYAGNPMAVASAHAVLDIIDEEKLCERAVRLGDKLKSRL
                     SSLKADVPQIADVRGPGGMIAVEFCKPGTTEADAAFAKRVQTLALERGLLLLICGVYS
                     NVIRFLFPLTIQDAVFDEALAILERVLTEEVGVAA"
     gene            5523..6992
                     /gene="gabD"
                     /locus_tag="VKJ77_22350"
     CDS             5523..6992
                     /gene="gabD"
                     /locus_tag="VKJ77_22350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009894094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009013 - succinate-semialdehyde
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_process: GO:0009450 - gamma-aminobutyric acid catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HMC48074.1"
                     /translation="MSTQRSPMQLKDPALLRFDAFIDGEWQGADDSSTFEVIDPANGQ
                     SLGHVPRMGAAETRRAIDAANTAWPLWRKKTAKERAAILRRWYELMLEHADDLAMILT
                     REQGKPLAEARGEIVYAASFIEWFAEEGKRVAGDTLASPAADKRIVVTKEPIGVCAAI
                     TPWNFPSAMITRKVGPALAAGCSIVVKPAEATPLSAFAMAVLAERAGLPKGVLNIVTG
                     DPKAIGAELTSNPIVRKLSFTGSTQVGRLLMAQSAPTVKKVSLELGGNAPFIVFDDAD
                     IDAAVEGAIASKYRNSGQTCVCTNRFYVHDRVYDEFAHKLGAAVAKLTVGNGLESGVL
                     LGPLINDAAVQKVESHIHDALDKGAKVVTGGKRHALGFGFFEPTVLSGVTSEMKIARE
                     ETFGPLAPLFRFSSDEEVIRMANDTEFGLAAYFYSRDIGRVWRVAEALEYGMVGINTG
                     LISNEVAPFGGVKQSGLGREGSRYGIDDYLVIKYLCIAS"
     gene            7171..7458
                     /locus_tag="VKJ77_22355"
     CDS             7171..7458
                     /locus_tag="VKJ77_22355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HMC48075.1"
                     /translation="MAIQTVKRWGNSLAVRIPSNLAAEASLIEGQEVDVEVQDGQLLV
                     RAHTAIPRFSRERLIQQFKEGKLQHHDEIDFGDPVGDEWGGPQDPTRDGIE"
     gene            7455..7793
                     /locus_tag="VKJ77_22360"
     CDS             7455..7793
                     /locus_tag="VKJ77_22360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HMC48076.1"
                     /translation="MKNGIPDAGDVIRLHVGPSKGNEQDGYRAVLVISDGVVNEITGR
                     FTGLPITSTVREWATEIPIKSLKRPGVALVDQIRSWSFTAREVNFRGETVTAEELDAA
                     KYAIKSFLQL"
     gene            complement(7771..8424)
                     /locus_tag="VKJ77_22365"
     CDS             complement(7771..8424)
                     /locus_tag="VKJ77_22365"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC48077.1"
                     /translation="MGQFSFISGGPENNSPDSVNPSLWRNAKLNMNHGLFEVVDGIWQ
                     VRGYDLSVMSIIRGDTGWIVIDPLMTADVSVVVWKQWVIPHLGDRPITHVIYTHSHAD
                     HYGGIRGIVDEADLKAGKVKIYAPAGFTEAAVGENVIAGNAMSRRAAYMYGNLLPRGV
                     DGVVDAGLGKTTSIGAITLLVPTDIATETGQKLTMDGVEMTVIMAPESEKLTVGGRI"
     gene            complement(8403..8603)
                     /locus_tag="VKJ77_22370"
     CDS             complement(8403..8603)
                     /locus_tag="VKJ77_22370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48078.1"
                     /translation="MPTGIGSKPPTKATLEANAVYARELAFNDTQDFQDASRGLIAAL
                     PSPGIIPSSKGDAAWIWGNFRL"
     gene            9330..10319
                     /locus_tag="VKJ77_22375"
     CDS             9330..10319
                     /locus_tag="VKJ77_22375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006395650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48079.1"
                     /translation="MEIRQLEAFAAVMSAGSVTAAGRLLGRSQPAVSRSIQELEAEIG
                     YPLFQRFGPRVAPTREASELYQDVERTLASLRQVKSRAEQIARQAPPPLTIAATSALA
                     AGLVPRALALLNEDHPLESVHLRSAAPEQVVDAVLSGIVDMGVSSLPLEHRGVLVHWI
                     GEAACVAAVHADDPLAQAPRIALSDFANRRLVTMQNPYRLRPRLDSAFAQAGVRTAGV
                     IETNSSLNALGAVRAGLGLAVLEPVTALGLPVDGVVIRPLDIRIAFLFGVITPEFRPP
                     SAATLAAAHALAQAAAEILPDFVLHDANQHSAILQALYGESDDTLNPTEEPAT"
BASE COUNT         2138 a         3217 c         3082 g         2027 t
ORIGIN      
        1 cgctacgact tatcgcgtct ggtagagcgt gacgaagccg atatcgatat cgtccgcatg
       61 gaggcctccg ggtgctatgg ccgcaattgc gccgacgacg ttgccggcga cgcgctcctg
      121 ctctcgcgtg cgatgggcca gccggtgcga gtccagctat cgcgcgctga tgaacatcag
      181 tgggagccca agggcacggc gcaagtcgtg gatgtgaccg gcacggtgtc ccgcagcggc
      241 gacacgctgg gctatacgtt cgccacgcgc tatccgtcaa acgacgcacc catgctcgcc
      301 ctgttgctca ccggcgcgac gccggccgag ccgcgcgtct ttgaaatggg cgaccggacc
      361 gcggttacgc cctacacctt cgcgcatcgc cgtttcgtct gccacgacct ggcgccgctg
      421 gtccgggcgt cgtggttccg aggggtgtcg gcactgccga actccttcgc ccatgatgta
      481 ttcatcgatg aactcgcgtt cgagaccggc gccgatcccc tggcattccg gctacgtcat
      541 ctcaaggacg agcgggccgt ggcgttgctt gaggcagtcg cggaacgcgc aggctggcaa
      601 gcccgtggcg gacgcggtcc agctcgcgat accggcgaac gcgtgcttca agggcgcggc
      661 gtggcgtatg cacggtatgt gcatagccgc tttcccggtt tcggcgcggc ctggtctgcg
      721 tggatcgtcg atctggaagt cgacacagtc agcggagaaa tccgcatcaa gcgagtgacg
      781 gtcggtcagg acacgggcac cgtgatcaat ccggacggcg tgcgccatca gatccacggc
      841 aacgtgatcc agaccctgag ccgcacgatg aaagagcgtg tgcgcttcac cgacggtctg
      901 gtcgcaagca aggaatgggg cagctatccg atcctgacat tccccgagct gccccccgtg
      961 gacgtggtgc tggtcgaccg gcaaggcgag ccgccgctcg gcgccggcga gtccgcttcg
     1021 ctccccggtg cgcccgctat ctccaatgcg ttattcgatg caaccggcgt gcggttccgc
     1081 gcgccgccat tcacgccaga tgcggtcaga gccacgttgc aggccgccgc aacggtggcg
     1141 cctgccgagc atcgatgatg cgcgtagcag cggcctgtac gtagccacag gcacgtacag
     1201 gtcagttgtc ttccgcccgc gtcatggcgc gcaacagata cacgatggca acgcgctccg
     1261 ccgggttcag ccctccaaac gtctgctcgc tcacctgctt cgcaaaaggc acggtctggt
     1321 cgatcaacgc caagccttcc ggtgtggtgc gtaccagcag cttgcggccg tcgagcgggt
     1381 cgggcgagac cacgatcagc gaacgcgttt tcaagcgctc gaccacgccg cggatggtgg
     1441 cctggtcgat tgctgtcgcc ttgacgatgt cgttgagcga gcaggattgc tgctccttga
     1501 ccgcacacag cgtgacgaac tgcgccgcgg tcaggtcgga atccggaatg gcggtttgaa
     1561 agatggcgac atggcgctgg tatgcgcgcc gcagcaggtg gccgatctgc tgggaaaagt
     1621 gatactcctc gctgccggga acttccggag gggctgatgg ttttttggac atgggaagaa
     1681 ttgtagggta cacgttctat tatgcttcga ttacggcgac gcaccgtttt cttcagtcct
     1741 accgtgctta cctttttatc atagtctgca gggcctttcg gcggtgttgt aaagccctgc
     1801 cttgggtatt ccgacctgcg tcagaacgcc acgatgacaa acccttgagt tctcgcgaaa
     1861 atggtataaa attttatacc taaggacgag atgacgccgg agaaagaaat tcgttgggta
     1921 ggatccgcct acgacgacct attggagttt ccagaggagc cacgccggga tgccggcttc
     1981 cagttgagca aggttcagtc tgggctagac ccagagaact ggaagccatt tggggaggtg
     2041 ggtgctggag ctcgggaaat ccgtatcagg gacagcagcg gcattttccg ggtgatgtac
     2101 gtagccaagt tcgaggaagc ggtatatgtc ctgcactgct tccagaaaaa gacccagaca
     2161 accagcaagc gggataagga aatcgccgaa gcgcgctatc gcgccgtggc caacgcaagg
     2221 aagatcaatc aatgacgatc gatactgaaa tccgccatgt gacgaaaccg ggcgcgaacc
     2281 tgttccgcga gcttgggttt tcggctgagg aagccaagct gcttcaggcc gcttcgcgca
     2341 agcaaatcaa cgacacacag cagctcaagg agcaattgat gtcggagctt gccgaatgga
     2401 tcgaacaaca tcatctcaag caggcagagg ccgcaaaaat cctgatggtg tcgcggccgc
     2461 gcgtatccga cgtggtgaac aagaagacgg ccaagttcac tatcgatacg ttggtcgaaa
     2521 tgctaagcag agtggggaaa tcggtcaggt tggcaatcgg ttaatagtcg aatctccgag
     2581 cgagggagac tcaagaacct ctcaccctgt cccccaacgc cgggtcaagc accgccgcca
     2641 gtttctcaaa cgccggctcg atttcctctt cggccacgca gccatacccg atcagcaagc
     2701 ccgacacgcc cgcgtccggc ctcaagaaat aacccgacag cggccgcacc acaatgttga
     2761 ccgcgagcgc cgctttcgcc acttcgcgat catccacgcc atcgggcaga cgcagcacga
     2821 gatgcaaccc ggcatcgccg ccgacaatct gcaacgcatc gccataccgc ttcctgatcg
     2881 tgtccagcaa gatctggcga cgctgcccat agattccccg catccgccgg atatgcgacg
     2941 tgaaatgccc ctccgcgatg aactcggcca gcaccgcctg ctgcaacaac tgcccctcgc
     3001 gatacaactc ggcggaagcc gtggcaaagc tcgtcgacaa cccctcgggc accacgatgt
     3061 agccaatccg cagcccgggg aaaagcgttt tgccgaagct gcccacgtag atcacctgac
     3121 ccgctgtatc gagtccttgc agcgacgcga gcggccgact gccgtatcga aactcgctgt
     3181 cgtagtcgtc ctcgatgatc cagcagccat tttgccgcgc gaattccagc agcatccgcc
     3241 gccgcgcgag gctcattacc atgccgagcg ggtattgatg cgacggcgtg accagcatca
     3301 gcttgggcgg gtctgcaaga tcatccgcgg aaggattgat gccttctgca tccaccggaa
     3361 tagccttgag cgataacccg gacacttgca acacgctacg cacgccccag tagcacgggt
     3421 cttcggtcca gatgacatcg ccggaatcgg acagcagccg cacggcaaga tcgatggact
     3481 ggtgaatccc cgtcgtcacg ataatttgct ccggcgtgca acgcaccgaa cgcgaggtcc
     3541 gcaaataatc ggcgagcacc tgacgcagct tgggcaaacc accgccgggc gcataggtca
     3601 gcagatcggg cggcaagcgg cgccagtatt tggattgcaa gcggctccag acggccgccg
     3661 gaaaccgcga cacatcgggt acgccgggca tgaacgcccc gccttgccgc tgcgacacac
     3721 ccgccccttg caacaaccgt gcgccgcgcg ccgacagcac acgcggttcc gcaggggccg
     3781 catcgcgcgc cgcggattcc gctcccacga tctcgtccgg cgcgctgtcc gagacaaacg
     3841 tgccctgtcc cgtcgccgac cacacatagc cttccagcgc gagttgctcg tacacctgcg
     3901 tgacggtatt gcggcccaga cccagctcgc tcgcgagcaa tcgggacgat ggcaccttgg
     3961 tccccgccgg caattcccgc gagaggatgg cctgctgcaa caagccatac aactgccgat
     4021 aaatcggcaa cccgcccgtt cgttcaatcc gctgagccag ccagtcggac aacatgcttg
     4081 cacgcatcgc gaaaatggct cctataaaaa cacggaaatg gctctgattg aaagagccaa
     4141 atcttactat agtcgaggta ccgcctgaga accgccaagt aacgaccaac ccgcgatcaa
     4201 cccgccgatc aaccgccaag gagcgatgcc gtgagccaga ccctgaagaa cgccgacctt
     4261 aaagcccgca aagacgccgc aacgccgcgc ggtgtcggcg tgatgtgcga tttctacgcc
     4321 gaacgtgccg aaaacgccga gctgtgggat gtggaaggcc gccgtttcat cgacttcgcg
     4381 gcaggtatcg cggtatgcaa cacgggacat cggcacccga aaattgtcgc ggcaatgcgc
     4441 gcgcaactcg agcgcttcac gcatacggcg tatcagatcg tcccttacga atcgtatgtt
     4501 tcgctcgccg agaagatcat cgcgcgcgca cccggcgact atgcaaagaa ggctgcgttc
     4561 tttacgaccg gcgcggaagc cgtcgaaaac gccatcaaga tcgcgcgcgc cgcgacgggc
     4621 cggccgggcg tgatcgcatt cacgggcggg ttccacggcc gcacgttcat gggcatggcg
     4681 ctcacgggca aggtagcacc ctataagatc ggcttcggac cgttcccgtc cgacgtattc
     4741 cacgcgccgt atccgaaccc tctgcgcggc atcacgaccg aagattcgct gcgcgccatc
     4801 gagcatcttt ttgccgcgga tattgaagcc aagcgggttg ccgcgatcat cttcgaaccg
     4861 gttcagggtg aaggcgggtt ctatcaggca cccgtggaat tcgtccgtgc gctgcgcaaa
     4921 ctctgcgaca cccacggcat cctgctgatc gccgatgaag tgcaaaccgg cttcgcgcgc
     4981 accggcaagt tgttcgccat gcagcactac gacgtctcgc cggacctgac gaccatcgcc
     5041 aaaagcctcg cgggcggcat gccgctgtcc ggcgtggtcg gccgtgccga tgtcatggac
     5101 tcggtcgcgc ccggcggtct tggcggcacg tatgccggca atccgatggc ggtggcgtcg
     5161 gcgcatgcgg tgctcgatat catcgatgaa gagaagctct gtgagcgtgc cgtgcggctg
     5221 ggcgacaagc tgaagtcacg gctgtcatcg ctcaaggcag atgtacccca gatcgccgat
     5281 gtgcgtggcc ctggcggcat gatcgccgtc gaattctgca agccgggtac caccgaagcc
     5341 gatgccgctt tcgccaagcg cgtgcaaacc ctggcgcttg aacgcggcct gcttttactg
     5401 atctgcggcg tgtacagcaa cgtgatccgg ttcctgtttc cgctgaccat ccaagacgct
     5461 gtgttcgacg aagcgcttgc cattctcgaa cgtgtcctga cagaagaagt gggtgtcgca
     5521 gcatgagcac gcaacgttca cccatgcaat tgaaagaccc ggcgctgctg cgtttcgacg
     5581 cgttcatcga cggcgagtgg caaggtgccg acgactcttc cacctttgaa gttatcgacc
     5641 cggcgaacgg tcagtcgctt ggtcatgtgc ccaggatggg cgcggcagaa acgcgtcgcg
     5701 cgatcgatgc ggccaatacc gcgtggccgc tctggcgcaa gaagaccgcg aaggaacgcg
     5761 cggccattct gcgccgctgg tacgaactga tgctggaaca tgccgacgat ctcgccatga
     5821 tcctcacccg cgagcaaggc aagccgctcg ccgaagcccg aggtgagatc gtctacgcgg
     5881 catcgtttat agagtggttc gcggaggaag gcaaacgcgt cgcgggtgac acgctggcgt
     5941 cgcctgccgc cgataaacgc atcgtggtga ccaaggaacc catcggcgtc tgtgcggcta
     6001 ttactccgtg gaattttccg agcgcgatga tcacgcgcaa ggtcggtccg gcgcttgcag
     6061 ccggttgttc gatcgtggtc aagcccgctg aggcaacgcc gctttccgcc ttcgccatgg
     6121 ccgtgctggc cgagcgcgcg gggttgccca agggcgtgct gaacatcgtc accggtgacc
     6181 cgaaggcgat cggcgccgag ctgaccagca atccgattgt caggaagctg tcgttcacgg
     6241 gatcgactca ggtcggccgt ctgctgatgg cgcaaagcgc gccgacggtc aagaaagtgt
     6301 cgctggaact gggcggcaat gcgccattta tcgttttcga cgatgccgat attgacgccg
     6361 cggtcgaagg cgctattgcg tcgaagtatc gcaacagcgg acagacttgc gtgtgtacga
     6421 accggtttta tgttcatgac cgggtgtacg acgaatttgc ccacaagctg ggcgcggccg
     6481 ttgcgaagct cacggtcggc aatggattgg agagcggcgt tttgctcggg ccgctgatta
     6541 acgacgctgc cgtgcagaag gtcgaatcgc atattcatga cgcgctggac aaaggcgcca
     6601 aggtcgttac cggcggcaag cggcacgcgc ttggtttcgg cttctttgaa ccgacagtgt
     6661 tgtcgggcgt gacttcagag atgaagatcg ccagggaaga aacgtttggg ccgctcgcac
     6721 cgttgttccg gttttcttcc gatgaagaag tgatacggat ggctaacgat accgagttcg
     6781 gtctggctgc gtatttttat agccgggata ttggcagagt ttggcgcgta gccgaggctc
     6841 tggaatatgg catggtcggg attaataccg ggctcatctc taatgaggtc gctccgtttg
     6901 ggggggttaa gcaatctggg ctcgggcggg aaggttcgcg gtatgggatc gatgactatc
     6961 tggtgatcaa gtatttgtgt atagccagtt gagggacgtt cgcacttgag ggggtgggcc
     7021 gaagcgtttg gtatgagcaa aaacatcagc gaggccggca acaacgagcc ggcgctcgat
     7081 gaaccgactg accctgtatc gacgcgttga cacttcaaac cataatctat aaaattaaac
     7141 gtagcaacgc gttgatacag gagagacaat atggcaattc agaccgtaaa gcggtggggt
     7201 aacagcctcg ctgtgcgcat tccgtccaat ctcgccgccg aagcctcgct tattgaaggc
     7261 caggaagtgg acgtcgaggt ccaggacggc caactgctcg tgcgcgccca caccgccatt
     7321 ccgcggttct cgcgtgagcg cctgattcag caatttaaag aaggcaagct ccaacaccat
     7381 gacgaaatcg acttcggcga tccggttggt gacgaatggg gtggcccgca agacccgaca
     7441 cgtgatggta tcgaatgaag aatggaatac cggacgcggg cgatgtgatc aggttgcacg
     7501 tcggcccctc caaaggcaac gaacaggacg gctatcgcgc ggtcctggtc atctccgatg
     7561 gagtcgtgaa cgagatcacc gggcgcttca ccggtctgcc catcacctcc accgtgagag
     7621 agtgggccac cgagattccg atcaagagcc tcaagcgccc aggcgtcgct ctcgtcgatc
     7681 agatcaggag ttggagcttc accgccagag aggtcaattt caggggtgaa acggtcacgg
     7741 cggaggagct cgacgccgcc aaatacgcaa tcaaatcctt cctccaactg tgagcttttc
     7801 ggattccggc gccatgatga ccgtcatttc gacgccatcc atggtcagct tctgacccgt
     7861 ctcggtcgcg atgtcggtcg gcaccagcaa cgtgatcgcg ccaatggacg tggtcttacc
     7921 caggccggcg tccactacac cgtcaacccc tcgaggcaac aaattgccgt acatgtacgc
     7981 cgctcgccgg ctcatcgcgt tcccggcaat gacgttttca cccaccgcag cctcagtgaa
     8041 tcccgccggc gcgtaaatct ttaccttgcc cgcctttaaa tcggcttcat cgacaatacc
     8101 cctaatgccg ccataatggt ccgcatggct gtgcgtataa atcacgtggg taatcggccg
     8161 atcaccaaga tgcggtatta cccattgctt ccacactaca acagagacat ccgctgtcat
     8221 cagtggatca ataacaatcc agccggtgtc tccgcggata atgctcatca ccgaaaggtc
     8281 ataaccccgg acctgccaga ttccatcaac cacttcgaac agaccgtgat tcatgttcag
     8341 cttggcattt cgccacaagc tgggattaac ggaatctggc gaattattct ccgggccgcc
     8401 gcttataaac gaaaattgcc ccaaatccag gccgcatcgc ccttcgagct cggaatgatt
     8461 ccggggctcg gcaacgcagc gatcagcccc cggctcgcat cctgaaaatc ctgcgtgtca
     8521 ttgaaggcta attcgcgcgc atacaccgca tttgcttcca gggtcgcctt ggtcggcggc
     8581 ttggaaccaa tgcccgtggg catggcgggc ggcgtgcctt gcgccaacgc gtccccggct
     8641 accgcgccaa gacccgatgc aacgcctaag gtgacagcac caactcccct caggaactct
     8701 ctgcgtttgg tcggggaagg cgggtttttt tcatcagacc taggtcaatt acctctaggg
     8761 tttccagttg ttctaaaagg cagaaggccg gataggaacg tatgatcaac gcgtccttca
     8821 gccgctgctt tcaatcacat tcaactgcga ttttcgcaat tagcacatcg tccaaagttt
     8881 tttcttgtca gcaggtttta tcaatcgttg agactttctc aatggaaaca gtcgtttgaa
     8941 taaattcaca cagacgactg acaaaatgct ttcgaatgtc attaagacat ctcaaccaat
     9001 atcggttttc atagtgtttg ggttgattgc cgaaaaattt ttctgcttga tatttatcgt
     9061 catttctcct atagcgcgaa gcgatctcta ataggcctga aatagtcgat tggtacgtgg
     9121 tttatcaatt gactctgcag ccattttatt ttttgcaacg ttgcagtccg acaccgccga
     9181 ttcgctgaac gtccatcgcc ccatcaaccg cccgcttccc agatcgagca ctatccaaag
     9241 catttttgat catttgcatt tcgcatgtta ggcgcgcaag aatgcgtttt atgcattcat
     9301 cgatctaacc ggtcggccgc cgtgtaccca tggaaatccg tcaactggaa gcgtttgccg
     9361 ctgtcatgtc ggccggaagc gtcactgccg ccgggcgttt gctcgggcgc tcgcaacccg
     9421 cggtatcgcg ctcgatccag gaactggaag ccgagatcgg ctatccgctg ttccagcgtt
     9481 tcgggccgcg tgtcgcgccc actcgcgagg catccgagct ttaccaggac gtcgagcgca
     9541 cgctggcaag cctgcgtcag gtgaaatcgc gcgccgagca aatcgcgcgg caagcgccgc
     9601 ctccgctcac cattgccgcc acatcggcgc ttgccgccgg actggtgcct cgcgcgctag
     9661 ccttgctcaa tgaggaccat ccgctcgagt ccgtgcattt gcgcagcgcc gctcccgaac
     9721 aggtagtcga tgccgtgctg agcggcatcg tcgatatggg tgtctcgagc ctgccgctcg
     9781 aacatcgcgg cgtgctcgtg cactggattg gcgaggctgc gtgcgttgcc gccgtgcacg
     9841 ccgacgatcc gctcgcgcaa gcgccacgca tcgcattgag cgattttgcg aaccgtcgtc
     9901 ttgtcacgat gcagaacccc taccgcctgc ggccacggct cgactcggca tttgcgcaag
     9961 cgggcgtgcg cacggccggt gtgatcgaaa ccaactcgtc gctgaacgcg ctcggcgcag
    10021 tgcgcgcggg actcgggctt gccgtgctgg agccggtgac cgcgctggga ttgcccgtcg
    10081 atggcgtggt gatccgtccg ctggatatcc gcatcgcgtt cctgtttggc gtcatcacac
    10141 cggaatttcg tccgcccagt gcggcgactc ttgccgcggc gcacgcgctt gcgcaagccg
    10201 ccgccgagat cctgcccgac ttcgtcctgc acgacgcgaa ccagcacagc gcgattcttc
    10261 aagcgctgta cggcgagtcc gacgacaccc tcaatccgac cgaagagccc gccacgtgag
    10321 cctcgacaaa aacatgtcat cgacaccccc tacgggcctt gcggcgctcg aagcgcgcct
    10381 cgcggaggac ctgtccctgc tcgaattgcc ggcacgcgaa tgggtgcccg gcaagacgca
    10441 taacggcagc gaagtgctgg acgt
//
LOCUS       DATGBK010001596         1515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_88061, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001596 DATGBK010000000
VERSION     DATGBK010001596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88061"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..440)
                     /locus_tag="VKJ77_22380"
     CDS             complement(<1..440)
                     /locus_tag="VKJ77_22380"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48080.1"
                     /translation="MEQGSFRAAARALDIAQSTLTQAIQSLEAELGVILLNRSHQGIS
                     LTALGENFLVRANAIIRDCERATQDMRPLTEEPEGHIALGVTSEPLAQFLLPVLKRYI
                     ERFPRVRVHVSTSYAKMLIEKIRDGALDFALCPLAPHVSDVDLS"
     gene            complement(473..>1515)
                     /locus_tag="VKJ77_22385"
     CDS             complement(473..>1515)
                     /locus_tag="VKJ77_22385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006218086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HMC48081.1"
                     /translation="LKLLEALPRRADNEDALSPADPSAPPVIEVKDVAIDYKVPGLWF
                     RKILARAVHPTSFSVQAGETVAIVGESGSGKTSIAKAILGLAPTAQGQILLNGLPFLN
                     AGHDAMQAARRSVQMVFQDPYSSLDPRMRVDALISEGLRLDKTLSRAQRAQRVADALD
                     DVGLSEFAGRLVHQLSGGQRQRVAIARALASRPAVIIADEPVSALDVTVQKQILDMLV
                     SLQQRYRFACLLISHDLGVVEQIADRVLVMFRGHIVEEGTRDAVFDNPVHPYTRRLLQ
                     AVPELRGNRDDGFKVITRTVPDDIDPSRKYFNAELAGRDMPVLVDVAAPTLRSTPTFV
                     DHRIALEAVQSS"
BASE COUNT          278 a          457 c          490 g          290 t
ORIGIN      
        1 atgctgagat cgacgtcgct tacatggggt gcgagcgggc acagcgcgaa gtcgagggcg
       61 ccatcgcgga tcttttcgat cagcatcttc gcgtagctgg tggacacatg cacccgcacg
      121 cgcggaaacc gttcgatgta acgcttgagt accggcagca ggaattgcgc gagcggctcg
      181 gaggtcacgc cgagcgcgat gtgtccttcc ggttcctctg tcaaaggcct catgtcctgc
      241 gtggcacgct cacagtcgcg gatgatcgca ttggcacgga ccaggaagtt ttcaccgagg
      301 gcggtcaggc tgatgccctg gtgcgaccgg ttcagcagaa tgacgcccag ctccgcctcg
      361 aggctttgga tggcttgggt cagcgtgctt tgggcaatgt ccagcgctct tgccgcggcg
      421 cgaaaactgc cttgctccac gaccgagcaa aatgcccgga gctggatcag agtcatgacg
      481 attgcactgc ttcaagcgcg atgcggtgat ccacaaaggt tggtgtggac ctgagcgtag
      541 gcgctgcaac atcgaccagt acaggcatgt cgcgacccgc cagctcagcg ttgaaatact
      601 tgcgggatgg atcgatgtcg tcaggcacgg tgcgcgtgat caccttgaag ccgtcatcgc
      661 ggttgcctcg cagttcgggc acggcttgca ggagtctgcg ggtgtaaggg tggaccgggt
      721 tgtcgaagac ggcatcgcgc gttccctctt caacaatatg gccccggaac atcaccagca
      781 cgcggtcggc aatctgctcg accacgccga gatcatgcga gatcagcaga cacgcaaacc
      841 ggtagcgctg ctgcagcgaa acgagcatgt cgaggatctg cttctgcacg gtgacatcga
      901 gtgcagatac cggctcgtcc gcgatgatca cggcaggtct gcttgccaac gcgcgtgcaa
      961 tcgcaacacg ctggcgctgg ccgccggaga gctgatggac gagccggccg gcgaactcgc
     1021 tcaagcccac gtcatccagc gcgtccgcga cccgctgggc gcgttgtgcg cggctaaggg
     1081 tcttgtcgag ccgcagtcct tcgctaatga gcgcgtcgac ccgcatgcgt ggatcgagtg
     1141 acgagtaggg gtcctggaac accatctgga ccgagcggcg cgcagcttgc attgcgtcat
     1201 ggccagcgtt gaggaagggc agcccgttga gcaggatttg cccttgcgcg gtcggcgcaa
     1261 gcccgaggat cgccttggca atacttgttt tcccgctgcc cgattcaccg acgatcgcga
     1321 ctgtctcgcc cgcctgcacg ctgaatgatg tcggatgcac ggcccgcgcg agaatcttcc
     1381 tgaaccacaa gccgggcact ttgtaatcga tggccacgtc cttgacttcg atgaccggcg
     1441 gcgcggatgg gtctgctggg ctcaacgcgt cctcgttatc ggcgcgcctt ggcagcgctt
     1501 cgagcagctt cagcg
//
LOCUS       DATGBK010001597         6618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_180534, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001597 DATGBK010000000
VERSION     DATGBK010001597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6618
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180534"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..532)
                     /locus_tag="VKJ77_22390"
     CDS             complement(<1..532)
                     /locus_tag="VKJ77_22390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014007507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HMC48082.1"
                     /translation="MSHISNVRPEPDRVLVDIVDYVLNYKIDSTLALDTARNCLIDTL
                     GCGLEALTYPACTKLMGPIVPGTIVPNGAKVPGTSFQLDPVQAAFNIGAMIRWLDFND
                     TWLAAEWGHPSDNLGGILATADWLSRNAVATGKKPLSMKDVLIAMIKAHEIQGCIALE
                     NSFNKVGLDHVLLVKLA"
     gene            complement(555..1727)
                     /gene="prpC"
                     /locus_tag="VKJ77_22395"
     CDS             complement(555..1727)
                     /gene="prpC"
                     /locus_tag="VKJ77_22395"
                     /EC_number="2.3.3.16"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050440 - 2-methylcitrate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HMC48083.1"
                     /translation="MSDTLAKEVPATGGFKPKKSVALSGVTAGNTALCTVGKTGNDLH
                     YRGYDILDIAGTSEFEEIAYLLVHGKLPTVAELKTYKAKLKGLRGLPANLKAALEWIP
                     ASAHPMDVMRTGVSVLGTVLPEKEDHSISGAKDIADRLMASLGSILLYWYHYSHNGRR
                     IETETDDDSIGGHFLHLLHGKEPSKSWVDAMHASLILYAEHEFNASTFTCRVIAGTGS
                     DMYSAITGGIGALRGPKHGGANEAAFDIQSRYQTPDEAEADIRRRVEAKEVVIGFGHP
                     VYTISDPRNKVIKEIAKKLSKEAGDTKLYDIAERLETTMWDAKKMFPNLDWFSAVSYH
                     AMGVPTAMFTPLFVISRTSGWSAHIIEQRIDNKIIRPSANYTGPEDLKFEPLNKRK"
     gene            complement(1758..2753)
                     /locus_tag="VKJ77_22400"
     CDS             complement(1758..2753)
                     /locus_tag="VKJ77_22400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HMC48084.1"
                     /translation="MRALTPAEVLFEGDVPPAVMPPCDHYAGSEKLIRKSLALQAQLG
                     PVFDVTLDCEDGAQVGQEASHAELVASFLGSADDRFGRVGVRIHDFQNRAWRDDVRII
                     LRAARKAPAYVTLPKIRSVFDAVEMVSFVEASRCEFGIKQAIPCHLLIETHGALAEVF
                     ELAALPGVEALSFGLMDFVSAHNGAIPDTAMRSPGQFDHPLVRRAKLEIAAACHAHGK
                     VASHNVSTEVRDMSVVAGDAQRARNEFGYTRMWSIHPDQIGPIVDAFLPRQDEIATAT
                     AILLAAQNAQWGPTRHQDTLHDRASYRYYWSVLRRAKASAQALPEGAETLFSQDK"
     gene            complement(2930..3916)
                     /locus_tag="VKJ77_22405"
     CDS             complement(2930..3916)
                     /locus_tag="VKJ77_22405"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016615 - malate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HMC48085.1"
                     /translation="MAKSAKRVVVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLDL
                     PQAQGAVKGVVMELEDCAFPLLAGVVVTDDPKVAFKDADVALLVGARPRSKGMERKDL
                     LSANAEIFTVQGKALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPQKNFTAMLRLD
                     HNRALSQLASKSGKPVASIEKLAVWGNHSPTMYPDFRFATVEGESLTKLINDDEWNRN
                     TFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGTNGKWVTMGIPSDGSYEIP
                     EDIIYGVPVTCENGEYKRVEGLEIDAFSREKMTGTLNELLEEREGVAHLLGK"
     gene            4505..5293
                     /locus_tag="VKJ77_22410"
     CDS             4505..5293
                     /locus_tag="VKJ77_22410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC48086.1"
                     /translation="MNSNPASTTNLPGPAGATEVVPASSPTFSPLYQQIKALITQGLE
                     SGEWKPGEMIPSEVELAARYKVSQGTVRKAIDELAADNLLVRRQGKGTFVATHNEDRV
                     QFRFLRLLPEDGDLHPHVSRLLECRRLRAPAEIARQLDLKPADPVVCIKRLLQFDGET
                     TVFDEIWLPGAVFRGLTAERLADYKGPLYAMFETEFGTRMIRASEKIRAVGADDAVAE
                     LLGVAVGSPLLSVERVSYTYGDRPVEVRRGWYVTNGYYYQNDLS"
     gene            5450..5860
                     /gene="sdhC"
                     /locus_tag="VKJ77_22415"
     CDS             5450..5860
                     /gene="sdhC"
                     /locus_tag="VKJ77_22415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HMC48087.1"
                     /translation="MAEAAKKPRPEYRNIGIAQLATYRLPLAGKVSILHRISGLLLFV
                     ALPFLLYLLDQSLTSEISFDAFKGFLANPLVKIVVLVLSWSFLFHFCAGIRFLLLDTH
                     RAVSKEGGKQTSIVVLAVSSLLTIVVALKLFGAF"
     gene            5863..6237
                     /gene="sdhD"
                     /locus_tag="VKJ77_22420"
     CDS             5863..6237
                     /gene="sdhD"
                     /locus_tag="VKJ77_22420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018439830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HMC48088.1"
                     /translation="MAANNNNRIGPKRLVVGAHYGLRDWLAQRITAVVMALYTLVLLF
                     WFFGARDFSYDGWASIFAMQWMKLATFVALLSLFYHAWVGIRDIWMDYVKPVGLRLFL
                     QVATILWLVGCIGYAAQILWRV"
     gene            6241..>6618
                     /locus_tag="VKJ77_22425"
     CDS             6241..>6618
                     /locus_tag="VKJ77_22425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC48089.1"
                     /translation="MAAIKTSLPRRRFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV
                     FPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIEFMCREAPGAVY
                     ELEHMGMPFDRNADGTIYQRPFGG"
BASE COUNT         1279 a         1969 c         1998 g         1372 t
ORIGIN      
        1 aagcgagctt cacgagcaaa acgtgatcaa gcccaacctt gttgaacgaa ttttccagcg
       61 cgatacagcc ttgaatttcg tgcgccttga tcatcgcgat caggacgtct ttcatcgaca
      121 gcggcttctt gccagtagcc accgcgttac gcgaaagcca gtcggcggtc gccagaatgc
      181 cgccgagatt gtccgacgga tggccccatt cagcagcgag ccacgtgtcg ttgaagtcga
      241 gccaacggat catcgcgccg atattgaacg cggcctgaac cgggtcgagc tggaaagagg
      301 tgccgggcac cttggcgccg ttggggacaa tcgtgccggg cacgatgggt cccatcagct
      361 tggtgcaggc agggtaagtc agtgcttcga gtccgcaacc gagcgtatcg atcaggcagt
      421 tacgtgccgt gtcgagcgcg agcgtgctgt cgatcttgta gttgagaacg tagtcgacga
      481 tatcgactaa tactcgatcc ggctcgggcc ggacatttga aatatggctc atgtgcttaa
      541 tgggtctctg tcaattattt gcgtttgttc agcggctcga acttcagatc ttcgggaccg
      601 gtgtagttcg cgctcggccg gatgatcttg ttatcgatac gttgttcaat gatgtgagcg
      661 ctccagcccg aggtccgcga gatcacaaac agtggcgtga acatggccgt gggcacgccc
      721 atcgcgtgat acgaaacggc gctgaaccag tccaggttcg ggaacatctt cttcgcgtcc
      781 cacatcgttg tttccaggcg ctcggcgatg tcgtaaagct tcgtgtcgcc ggcttccttg
      841 gaaagcttct tcgcgatttc cttgatcacc ttgttgcgcg gatcggagat cgtgtacacc
      901 ggatgtccga agccgatcac cacttccttc gcttccacac gtcgacggat atcggcttcc
      961 gcttcgtccg gcgtttgata gcgcgactgg atatcgaacg cggcttcatt ggcgccacca
     1021 tgcttcggac cgcgcaatgc gccgataccg ccggtgatgg ccgagtacat gtccgagccc
     1081 gtgccggcga ttacgcgaca cgtgaacgtc gatgcattga attcgtgctc ggcatacagg
     1141 atcagagacg cgtgcattgc atcgacccac gacttcgacg gttccttgcc atgcagcaaa
     1201 tgcaggaaat gcccgccgat ggaatcgtca tcggtctcgg tttcaatacg ccggccgtta
     1261 tgagaatagt ggtaccagta cagcagaatt gagccgagcg aggccatcag gcggtcggca
     1321 atatccttgg cgccggagat gctgtggtct tccttctcgg gcagcacggt gccgagcacg
     1381 gagacgccgg tgcgcatcac atccatcggg tgagccgaag caggaatcca ttccagcgcg
     1441 gctttcaggt tcgcgggaag gccacgcaaa cccttgagct tggctttgta ggtcttcagt
     1501 tcagcgaccg tgggcagctt gccatgcacg agcagatacg cgatctcctc gaactcggac
     1561 gtcccggcaa tatccaggat gtcatagcca cgatagtgca agtcattgcc cgtcttgccg
     1621 acggtgcaca gcgcggtatt accggccgtc acgcccgaca gcgcgaccga tttcttcggt
     1681 ttgaagccgc cggtggcggg tacttctttc gctaacgtat cgctcattcg acccagtctc
     1741 ctgatatgta gaaggcgtta cttgtcttgt gaaaaaagcg tctctgcgcc ttcgggcagt
     1801 gcctgggccg acgctttcgc gcggcgcagc accgaccagt aataccgata gcttgcgcga
     1861 tcgtgcagcg tgtcctgatg ccgcgtcggt ccccactgcg cgttttgcgc cgcgagcaaa
     1921 atcgcggtgg cggtcgcaat ctcgtcttgc cgcggcagga aggcatcgac gatcggcccg
     1981 atctgatccg ggtggatgct ccacatgcgc gtatagccga actcgttgcg cgcgcgctgg
     2041 gcatcgcccg cgaccacgct catgtcgcgc acttccgtgg agacgttatg cgacgccacc
     2101 ttgccatgcg cgtggcaggc cgccgcgatc tcgagtttcg cgcgccgcac gagcggatga
     2161 tcgaactggc cgggcgagcg catcgcggtg tcggggatcg cgccgttatg cgccgacaca
     2221 aaatccatca gcccgaagct cagcgcctcg acgcccggaa gtgccgcaag ttcgaagacc
     2281 tcggccagcg cgccatgcgt ttcgatcagc aggtggcacg ggatggcttg cttgatcccg
     2341 aactcgcacc gcgacgcttc gacgaatgag accatctcga cagcatcgaa gacgctgcga
     2401 atcttgggca gcgtgacgta cgcgggcgct ttcctggcgg cgcgcaggat gatgcgcaca
     2461 tcgtcgcgcc atgcacggtt ctggaaatcg tgaatacgca caccgacgcg gccaaagcgg
     2521 tcgtccgcgc tgccgagaaa cgatgccacc agttccgcgt gcgatgcttc ctgaccgact
     2581 tgcgccccgt cctcgcaatc gagcgtgacg tcgaacaccg ggccgagttg cgcctgcaac
     2641 gcgagcgatt tccggatcag cttttcgctt cctgcgtagt gatcgcaagg gggcatcaca
     2701 gcgggtggaa cgtcgccttc aaacaggact tcggcggggg tgagagcgcg catcgtcggc
     2761 gtcgggttgc ttgtaaagag ggtggaaacc gcggattcgg gagggttcgg acgttaagtc
     2821 aaacgccaaa caacgccaga catcaagcgc caaacgcact cgaatcagcc gcgagcgccg
     2881 gccttggttg ccaggcgctc gcgtgaaacg caaagactgc cagacccgct tacttgccca
     2941 gcagatgcgc aacgccttca cgctcttcga gcaattcgtt cagcgtgccg gtcatcttct
     3001 cgcgcgagaa cgcgtcgatt tccagacctt caacgcgctt gtattcgccg ttttcgcacg
     3061 tcacgggaac accgtagatg atgtcttccg ggatttcgta cgaaccatca gacggaatgc
     3121 ccatggtgac ccacttgccg ttcgtgccga gcacccagtc gcgcacgtgg tcgatagccg
     3181 cattggctgc cgacgctgcc gacgacaaac cacgcgcttc aataattgcc gcgccgcgct
     3241 tgccgaccgt cgggatgaac gtgttgcggt tccattcgtc gtcgttgatc agcttggtca
     3301 gcgactcgcc ttcgaccgtg gcgaaacgga aatccgggta catggtcggc gagtgattgc
     3361 cccacacggc cagcttttcg atcgatgcga ccggcttgcc cgacttcgac gccagttgtg
     3421 acagcgcgcg gttgtggtcc agacgcagca tggctgtgaa gttcttctgc ggcaggtccg
     3481 gcgccgactt cattgcaatg taagcgttcg tgttggccgg gttgccgacc acgagcacct
     3541 tcacgtcgcg gcttgccact tcattgagcg ccttgccttg caccgtgaaa atttcagcgt
     3601 tagcggacag caggtcctta cgctccatac ccttcgaacg gggacgggcg ccgaccagca
     3661 acgcgacgtc ggcgtccttg aacgcgacct tcgggtcgtc ggtgacgacc acgccggcca
     3721 gcagcgggaa cgcgcagtct tccagttcca tgactacacc cttgacggcg ccttgcgcct
     3781 gcggcaggtc gagcaactga aggatgaccg gttggtcctt gcctagcagg tcgccattgg
     3841 cgatgcggaa cagcagcgag taaccgattt gacctgcggc gccggtgacg acaacgcgct
     3901 ttgcggactt agccattgaa aacactcctg aacggtgcgt gaaacgctag gggaaaacgc
     3961 cattttaggc gcgttacgcg aagcgttgat gaagcatgtg aatcgaactg cgcgggctgc
     4021 cccgaaaacc caatggcgtc gcgcctgaag cgagattgtc attgtttttc cggtagcatg
     4081 ccggcaatcg cagcccaacc ctcgtgctgg aaatctggcg cggcgagcat gggtttttgc
     4141 gctggatcct gctggttcag cgccgcttat aacgccaata ccgcctcgtg cctcgtgcgt
     4201 cgcgttttcg agggcgcgcg ggcgttgcaa gagcggggca ctggcagcgg cagcgaacac
     4261 gaaagccgtt cggcttgaag cggagagcgg tagggcgttc tggggcgttt cagtggccag
     4321 cgcttggcta gtcgacgcac cgggcgcgct gcatgacacg cgcagcatcc cgcaaaccct
     4381 tgctcgccaa ggagtgtagg attcgatcag ggcaaagtca accgtatcat atgtcttata
     4441 taagacatag gaatgcccgg gaaaacgcta gacgcgactt ggcgctttat gatgaaatgc
     4501 gcgcatgaat tcgaacccag cgagcaccac gaaccttccc ggcccagccg gcgcgacgga
     4561 agtcgtgccc gcttcgtcgc cgacgttcag cccgctatac cagcagatca aggccctgat
     4621 tacccagggg cttgaatcgg gcgaatggaa gcccggcgaa atgatcccca gcgaagtcga
     4681 actggccgcc cgctacaagg tgagccaggg gacggtacgc aaagccatcg acgagctcgc
     4741 cgccgacaac ctgctcgtgc gccgccaggg caagggaacg tttgttgcaa cgcacaacga
     4801 agatcgcgta cagttccgct ttctccggtt actgccggag gacggcgacc ttcatcccca
     4861 cgtgagccga ttgctggagt gccgccgttt gcgcgcaccc gccgagatcg ctcgccaact
     4921 ggacctgaag ccggccgatc cggtcgtgtg catcaaacgc ttgctgcagt tcgacggcga
     4981 aaccaccgtc ttcgacgaaa tctggttgcc cggcgcggtt ttccgcgggc tgacggctga
     5041 gcgcctggcg gattacaaag gcccgcttta tgcaatgttc gaaacggagt tcggcacgcg
     5101 catgatccgg gcatcggaga aaatcagggc ggtgggggcg gacgacgcgg ttgccgaatt
     5161 gcttggcgtg gccgtcggtt cgccgctgct gtcggtcgag cgggtgtcgt acacgtatgg
     5221 cgaccggccg gtggaagtgc ggcgcgggtg gtatgtcacg aacggctatt actatcaaaa
     5281 cgatttgagt tgaaacggga cgtggacggc ttggcggcgc acccaagggg cgccgcaaaa
     5341 gcctttctca cgcgatcagc aatagcctct tgcgcggcat ttcgctgcag cgcgatataa
     5401 aaaggcgcta aaatcgcgga ctagtgtgat aacaaagttg gggtctagca tggctgaagc
     5461 cgcaaaaaaa ccaagacctg agtaccggaa tatcggaatt gctcagctag caacctaccg
     5521 cttgccacta gcgggaaagg tgtcaattct tcaccgcatc agtggtctgc tgctattcgt
     5581 agcgctgccg tttctgctct atctgctgga ccaaagcctg acgtcggaga tcagtttcga
     5641 cgccttcaag ggctttctcg ccaatcccct cgtcaagatc gtcgtcctcg tgctttcgtg
     5701 gtccttcctg ttccactttt gcgcaggcat ccgcttcctg ctgctcgaca cccatcgcgc
     5761 agtgagcaag gaaggcggca agcagacgtc catcgtcgtg ctcgcggtgt catctctgct
     5821 gacaatcgtc gttgcgctta aactcttcgg agccttctga gaatggcagc gaataacaac
     5881 aatcgaatcg gtcccaagcg cctcgtcgtt ggtgcgcact acggtttgcg cgactggctg
     5941 gcgcaacgca ttaccgccgt cgtgatggcc ctgtacacgc tggtgctgct gttctggttt
     6001 ttcggtgcac gtgatttttc gtacgacggc tgggcatcca ttttcgccat gcaatggatg
     6061 aagctcgcca ccttcgtagc cttgctctcg ctcttttatc acgcgtgggt cggcattcgc
     6121 gacatctgga tggactacgt gaagccggtt ggcttgcgcc tgttcctgca ggtggcgacg
     6181 atcctttggc tggtcggctg tatcggctac gcggcacaga ttctctggag agtgtaaaga
     6241 atggctgcaa ttaaaacgtc cctgccgcgt cgccgtttcg acgtagttat cgtaggcgca
     6301 ggtggttcgg gcatgcgcgc gtcgctgcaa cttgctcgcg ctggtctatc ggtcgcggtg
     6361 ctatcgaagg tgttcccgac gcgctcgcac accgtcgcgg cgcaaggcgg tattggcgca
     6421 tcgcttggca acatgagcga agacaactgg cattaccact tctacgacac catcaagggc
     6481 tccgactggc ttggcgacca ggatgcgatc gaattcatgt gccgtgaagc gcccggcgcc
     6541 gtctacgaac tcgaacacat gggcatgccg ttcgaccgta acgcagatgg cacgatctat
     6601 cagcgtccgt ttggcggg
//
LOCUS       DATGBK010001598         2207 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_227518, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001598 DATGBK010000000
VERSION     DATGBK010001598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227518"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..>2207)
                     /gene="valS"
                     /locus_tag="VKJ77_22430"
     CDS             complement(186..>2207)
                     /gene="valS"
                     /locus_tag="VKJ77_22430"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HMC48090.1"
                     /translation="QRASQRALLRNLQRGELYRQLAPCLWDVTFQTAVAQAELEDREI
                     GGAFHDLRFADDDGNGVVVSTTRPELLPACVALVAHPEDERFRQLIGRMVRCPLFGMD
                     VPVRTHALADPAKGTGLAMICTFGDLTDVIWWRELDLPTRAIIGKDGRVQHDVPDWIV
                     SQEARASYLQIAGCTVAEARRRIVEALKASNGLIGTPRPIKHTVKFFEKGDRPLEIIA
                     TRQWYLRNGGRDLTLREDLLERGNELRWSPSFMGSRYANWVGGLNGDWLISRQRVFGV
                     PIPLWYPLDSQGQPDFGAPICPDESSLPIDPRSHVPAGYSEHQRGEAGGFIGEADIMD
                     TWATSSLTPQIAAGWEEADGCFDQVFPMDLRPQAHDIIRTWLFSTVVRSHLESKRLPW
                     KQAMLSGWILDPDRKKMSKSKGNVVTPIALLDKYGSDGVRYWAAQGRLGMDTAFDETQ
                     MKNGRRLAMKLLNVSKFALGFAHQSDRSMTEPLDRAMIARLAKVVNLAATALASLDYS
                     KALEQTEAFFWWYCDDYVELVKGRAHGTGAGAASAHCALAESLSVIQRLFAPFLPFAA
                     EESWSWWQEASVHRALWPDAFLLDVLAGPDAITDTTNVVSDVLREIRRAKSEAKVSMK
                     AVVDHVIVSDSAERLAILRSAERDLCDAGQVKRFETALAESFGVSVTLA"
BASE COUNT          462 a          712 c          611 g          422 t
ORIGIN      
        1 aagcatgcgt ggtctcgttg gcggagcggt gtccgcacgg taggcgccgc ccagcgtggt
       61 gtgcggcgcg ctcaaaacaa tatcagaaag tcgcagcgcg tccgcaaaag cttcgagata
      121 gcttcgcaaa tgctcgtgtc acagcccggt caggaggcgc aaacgcgtcc cctgacccgt
      181 gctttctagg cgagcgtgac actgacacca aagctctccg ctaaggccgt ttcgaaccgc
      241 ttgacctgtc ccgcgtcaca caggtcacgt tccgctgacc gcaaaatcgc caaccgctct
      301 gccgagtcgc tgacgatgac atggtccacg accgctttca tcgacacctt cgcttccgat
      361 ttggcacgtc gaatctcgcg taatacgtca gagacgacgt tcgtggtgtc ggtgatcgcg
      421 tccggccctg cgaggacgtc gagcaaaaat gcatcgggcc acagagcgcg atgaactgac
      481 gcttcttgcc accacgacca gctctcctca gcggcgaacg gcaggaacgg cgcgaaaagg
      541 cgctggatca ctgacagaga ttcagccaac gcgcaatgag ctgacgccgc accagccccg
      601 gtaccgtgcg cacgaccttt cacgagttca acgtagtcgt cgcaatacca ccagaaaaaa
      661 gcttctgtct gttcgagagc tttgctgtag tcgagcgagg caagcgcagt cgcagcgagg
      721 ttcacgacct tcgcaagccg cgcaatcatc gcccggtcca acggttcggt catgctccgg
      781 tcggattgat gagcgaagcc gagcgcgaac ttcgacacgt tcaacagctt catcgccagc
      841 cgccgcccgt tcttcatttg tgtttcgtcg aacgcggtat ccatcccaag gcgtccctgt
      901 gcggcccagt aacgaacgcc atccgagccg tatttatcga gcagcgcgat cggcgtcacc
      961 acgttgcctt tcgactttga cattttcttt cgatcgggat cgagaatcca gcctgacagc
     1021 attgcttgct tccacggcaa ccgcttcgat tcaaggtgcg accggacgac cgttgaaaac
     1081 agccacgtcc ggatgatgtc gtgtgcttgt ggacgcaggt ccatcggaaa tacctggtcg
     1141 aagcacccgt ccgcttcttc ccaaccggct gcgatctgcg gcgtgaggga actcgtcgcc
     1201 cacgtatcca tgatgtcggc ttcaccaata aatccgccgg cttcccctct ttgatgttca
     1261 ctgtaaccgg ccggaacgtg cgaccgagga tcgatcggca atgacgactc gtccgggcag
     1321 atcggcgcgc cgaaatcagg ctgtccttgc gaatcgagcg gataccacaa cggaatcggc
     1381 acgccgaaaa ctctctggcg gctgatgagc cagtctccat tcaaaccgcc gacccagttc
     1441 gcgtagcggc tgcccatgaa gctgggagac cagcggagct cattgccacg ctccaagagg
     1501 tcctcacgaa gtgtcaaatc acgtccgcca ttgcgcagat accactgccg cgtcgcgatg
     1561 atttcgagtg gacggtcacc tttctcgaag aacttaacgg tgtgtttgat cggccgcggc
     1621 gttccgatca agccgttact cgccttcaac gcttcgacta tccgccgacg cgcttctgca
     1681 accgtacatc ccgcaatctg caggtacgac gcacgagctt cctgcgacac gatccagtcc
     1741 ggcacatcat gctgcacgcg accgtcctta ccgatgatcg cgcgtgttgg aagatcgagc
     1801 tcacgccacc aaatcacatc ggtaaggtcg ccgaaggtac aaatcatcgc gaggccggtg
     1861 cctttcgccg gatcggcgag cgcatgcgtt ctgaccggca cgtccatgcc aaacaacggg
     1921 cagcggacca tcctgccgat cagctggcga aagcgctcgt cctcggggtg tgcgaccagt
     1981 gcaacacaag ccggcagcaa ttccggccgc gtcgtggaca ccaccacgcc gttgccatcg
     2041 tcgtctgcaa aacgaagatc atgaaaagcg ccgccgatct cgcgatcctc cagctcagcc
     2101 tgggccacgg ccgtctggaa agtgacgtcc cagagacacg gcgccagttg acgatagagt
     2161 tcgccgcgtt gcaagtttcg cagcagcgcg cgctgacttg cgcgttg
//
LOCUS       DATGBK010001599         1739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_18497, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001599 DATGBK010000000
VERSION     DATGBK010001599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18497"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..350)
                     /locus_tag="VKJ77_22435"
     CDS             complement(<1..350)
                     /locus_tag="VKJ77_22435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HMC48091.1"
                     /translation="MHASVSEVLQRHRSVRRFARRDLPVELVQRVVTEAVAGTSSYGN
                     LNCASVVATAEAERLASLRALHFDQPATQSAPLMLTVCADTYRLGVWLAAREARPCFD
                     NLHGLAVGVVDACLL"
     gene            complement(431..1171)
                     /locus_tag="VKJ77_22440"
     CDS             complement(431..1171)
                     /locus_tag="VKJ77_22440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48092.1"
                     /translation="MSRQPYLIRITERRCQDPQEESAMLRIRAAALEYRAMRLEAQEL
                     GYSFCLRDRASSVQLAWAGSNQALDLLIKRDPLFPYSEIDVTPVIDTEWLIQEAQDYL
                     GEEIISGARASQLVHPQQEAREDRSYFLVWKEVRPFSPLLAEAIQDDIYRRTVRSQDA
                     HENNRLEFADHNPVGQQVGILIGCGSEAEVMAHVRNCEVFPDTVVTCEALLTLSAAFT
                     QCCNRLIELRRAPPVSTIFQQTLAEAAA"
     gene            complement(1168..>1739)
                     /locus_tag="VKJ77_22445"
     CDS             complement(1168..>1739)
                     /locus_tag="VKJ77_22445"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HMC48093.1"
                     /translation="FWRLSFRALLGRYPHFIRNRRQRRDVLIDDAGLAIWLTIVVACS
                     VKWPMTMVEVYWAPLLLFFPTVFIFSLPEHYGCEQSADWRRNTRSVRSNVVASYLYWN
                     GNFHADHHMFPRLPSRHLPRLNRLLEGNFAFGADSYTGFHLDLIRRLRSTRPESSFEA
                     GVTKVLSPSERIHFNELVAQESMEMESDR"
BASE COUNT          353 a          556 c          507 g          323 t
ORIGIN      
        1 agcaagcacg cgtcgaccac cccgaccgcc agtccatgta ggttgtcgaa gcaaggccgc
       61 gcttcgcgcg cagcgagcca cacgccaagc cgataagtat cggcgcatac cgtcaacatc
      121 agtggcgcgg actgcgtggc cggctgatcg aaatgcagcg cgcggagcga cgcgagccgt
      181 tcggcttcgg cggtcgccac caccgaggcg cagttcagat taccgtatga cgacgtgccc
      241 gccacggcct cggtcacgac gcgctgcacg agctccaccg gcaaatcgcg tcgcgcaaag
      301 cgcctgactg agcgatgccg ttgcagcact tcggatacgc tggcgtgcaa tagaaccccc
      361 gcttcgttgt gagcctggtt gcccgatccc atccgcctat gcagcttggc ggtcgtgcgg
      421 cgtcagacgc tcaggccgcg gcctcagcca gcgtctgctg gaaaattgtc gaaaccggcg
      481 gagcgcgccg tagttcgatc aaccggttgc agcactgcgt gaatgccgcc gacagcgtca
      541 gcaacgcttc acaggtgact acggtgtccg ggaacacctc gcagttgcgc acgtgcgcca
      601 ttacttcggc ctcgcttccg caaccgatca gaatgccgac ctgctgcccc actggattgt
      661 gatcggcgaa ttccaggcga ttgttttcat gggcgtcctg cgagcgcacg gtacgccgat
      721 agatgtcgtc ctgtattgcc tcggccagca gagggctgaa cggccgaact tccttccaca
      781 ccagaaagta gcttcgatct tcgcgagcct cctgctgcgg atgaaccagt tgcgacgccc
      841 gcgcccccga aatgatctcc tcgcccagat agtcctgcgc ttcctgaatc agccactcgg
      901 tatcgatcac cggtgtgacg tcgatttccg aatagggaaa cagcggatcg cgttttatca
      961 gcaggtcgag cgcctggttc gatcccgccc acgccaattg aacgctgctc gcgcggtcgc
     1021 gcagacaaaa cgaataaccg agctcctgcg cttcgagtcg cattgcacgg tattcgagtg
     1081 ccgcggcgcg aattctgagc atcgcgctct cctcctgcgg atcctgacac cggcgttcgg
     1141 tgatccggat cagatatggt tgacggctca tcgatcgctc tccatttcca tggattcttg
     1201 tgctaccagt tcgttaaagt gaatcctctc gctcggggag agcaccttcg ttacgccggc
     1261 ctcgaaggaa ctctccggcc gggtcgacct gagccggcgg atcaggtcca gatgaaagcc
     1321 cgtataggaa tccgccccga atgcgaagtt gccttcgagg aggcgattca ggcgaggcaa
     1381 atgtcgtgaa ggcagtcgcg gaaacatgtg gtggtccgca tggaagtttc cgttccagta
     1441 cagataagac gccacaacgt tagagcgcac cgaacgcgta tttctgcgcc agtctgcgct
     1501 ctgctcgcac ccgtaatgtt cgggtagact gaagatgaac accgtcggga agaacagcag
     1561 cagcggcgcc caatagacct cgaccatcgt catcggccac ttcaccgaac aggccacgac
     1621 gatcgtcagc cagatcgcca agccggcgtc atcgatcagc acatcgcgcc gctgtctgcg
     1681 attgcgaatg aagtgcggat aacggcccag gagcgccctg aacgacaggc gccagaacg
//
LOCUS       DATGBK010001600         3789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_273949, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001600 DATGBK010000000
VERSION     DATGBK010001600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3789
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273949"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..517)
                     /locus_tag="VKJ77_22450"
     CDS             complement(<1..517)
                     /locus_tag="VKJ77_22450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48094.1"
                     /translation="MKPLLRAVLVINALIFLAFGVLFLLTPWTALWASMHLVTVQPPF
                     VGQLFGVALIGIAWLAVHAAIDGALTATAAKVSGHVEWLSGLVMMVWLLGLHTPELTG
                     FGQVIAALVGVAMLVLGLGSVRLSGAVRRRERAALAGAAAAERAEKRAAKTKVEERVE
                     RVTPPPRPLSSD"
     gene            complement(547..1980)
                     /gene="guaB"
                     /locus_tag="VKJ77_22455"
     CDS             complement(547..1980)
                     /gene="guaB"
                     /locus_tag="VKJ77_22455"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HMC48095.1"
                     /translation="MRLIQKALTFDDVLLVPAFSNVLPRDTSLKTQVTRKISLNMPLL
                     SAAMDTVTEGRLAIAMAQLGGVGIIHKNLTAAEQAREVAKVKRFESGVVRDPITVPPQ
                     MKVRDVIALTQQHGISGFPVVEGPQLIGIVTNRDLRFEERLDDEVRKIMTPRERLVTV
                     KEGTPLAEAKALMHSHRLERVLVVNDAFELRGLMTVKDITKQTEHPDACKDEHGKLRA
                     GAAVGVGPENEERVELLSAAGVDIIVVDTAHGHSQGVLERVRWVKQNYPHIEVIGGNI
                     ATAAAAKALVEYGADGVKVGIGPGSICTTRIVAGVGVPQITAVANVSDALRGSGVPVI
                     SDGGVRFSGDVSKALAAGADAVMMGSMLAGTEESPGDVFLFQGRQFKAYRGMGSVGAM
                     KDGAADRYFQDNSANIDKLVPEGIEGQVAYKGSVNAILFQVVGGVRASMGYCGCRNIA
                     EMHDKAEFVQITGAGMRESHVHDVQIT"
     gene            complement(2204..2533)
                     /locus_tag="VKJ77_22460"
     CDS             complement(2204..2533)
                     /locus_tag="VKJ77_22460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013588778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HMC48096.1"
                     /translation="MTLSVEVCYALPEGKSAVCALSLAEGVTLRAAIEASGLLAQFPE
                     IDLNVQKVGVFGKIQALDAVLVDHDRVEIYRPLKVDPKVARQRRVEKTRRGGSIEGRR
                     WTRKEAR"
     gene            complement(2533..2967)
                     /locus_tag="VKJ77_22465"
     CDS             complement(2533..2967)
                     /locus_tag="VKJ77_22465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009904866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HMC48097.1"
                     /translation="MADVQKTVLIRHSAEQMFDLVTDVADYPNFLPWCGGVEVGRHDE
                     HSMEAKIHINFKGIKQHFATRNVHTRPTTIDMEFMDGPFKKFTGYWRFTPLRADACKI
                     EFALHYEFSNIILEKIIGPVFSHIAHTFVDSFVKRADQRYGK"
     gene            3067..3516
                     /gene="smpB"
                     /locus_tag="VKJ77_22470"
     CDS             3067..3516
                     /gene="smpB"
                     /locus_tag="VKJ77_22470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HMC48098.1"
                     /translation="MSIIDNRKAFFDYFIEDRYEAGLVLEGWEVKALRAGRGQIKEGY
                     VIIRDGELFLIGAHISPLPEASTHIHPDPVRTRKLLLHSEEISKLISKVEQKGHTLVP
                     LNFHYKGGRVKCEIGLAKGKKLHDKRETEKKRDWEREKAQIMRGAKH"
     gene            complement(3634..>3789)
                     /locus_tag="VKJ77_22475"
     CDS             complement(3634..>3789)
                     /locus_tag="VKJ77_22475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="band-7 C-terminal domain-containing protein"
                     /protein_id="HMC48099.1"
                     /translation="AEQYVTAFGNIAKQGNTLIVPGNLSEMSSMIASALSIIKGDGTS
                     GGVIRKS"
BASE COUNT          800 a         1224 c         1037 g          728 t
ORIGIN      
        1 gatcggacga caaaggcctc ggcggcggcg tcacgcgctc cacccgctct tccaccttgg
       61 tcttcgccgc acgtttctcg gcacgctcag ctgcagcagc cccggccagt gcggcgcgct
      121 cgcgccgccg caccgcacct gacagcctca cgctgccaag ccccagcacc agcatggcca
      181 cgccgaccaa cgccgcgatg acctgaccaa accccgtcaa ctcgggcgta tgcagcccga
      241 gcagccagac catcatcacc aggcccgaca accactccac atggcccgag accttggcgg
      301 cggtcgcagt cagcgcgcca tcgatagcgg catgaaccgc gagccacgca ataccgatca
      361 gcgcgacccc gaacaactgt ccgacaaacg gcggctgcac ggtcacgaga tgcatcgatg
      421 cccataaagc ggtccatggc gtcagcagga acaacacgcc aaacgcgagg aaaatcagtg
      481 cattgatgac aagaacggcg cgcagcagcg gtttcatggt cagtccacgt ggtagttggg
      541 cgcttcctac gtgatctgca cgtcatgcac gtgcgactcg cgcatgccgg cacccgtgat
      601 ctggacgaat tcggccttgt cgtgcatttc ggcgatattg cggcagccgc aatagcccat
      661 gctcgctcgg acgccgccga ccacctggaa caggatcgcg ttgacggaac ccttgtaagc
      721 cacctggcct tcgatgcctt caggcacgag cttgtcgata ttcgccgagt tgtcctggaa
      781 ataccggtcc gccgcgccgt ccttcatcgc gccgaccgaa cccatgccgc ggtacgcctt
      841 gaactggcgg ccctggaaca ggaagacgtc gccgggggac tcttccgtgc cggccaacat
      901 gctgcccatc atcacggcgt ccgcgccggc ggcaagcgcc ttgctgacat caccggaaaa
      961 acgcacgccg ccgtcggaga tcaccggcac gcccgaaccg cgcaatgcgt cggaaacatt
     1021 cgccaccgcc gtgatttgcg gcacgcccac acccgccacg atccgcgtcg tgcagatcga
     1081 acccgggccg ataccgacct tcacgccatc tgccccgtat tcgacgagcg ctttagcggc
     1141 tgcagccgta gcgatattgc cgccgatcac ttcaatatgc ggatagttct gcttcaccca
     1201 gcgcacccgt tcgagcacgc cctggctgtg tccgtgcgcc gtatccacga cgataatgtc
     1261 cacgcccgcc gccgacagca gctcaacgcg ctcttcgttt tccggaccca cgccaactgc
     1321 cgcgccagcg cgcagcttgc cgtgttcgtc cttgcaggcg tccgggtgtt cggtttgctt
     1381 ggtgatgtcc ttgacggtca tgaggccgcg caattcgaac gcgtcgttga cgaccagcac
     1441 ccgttccagc cgatggctat gcatcagcgc cttggcttcg gcgagcggcg tgccttcctt
     1501 gacggtcacg agacgttcac gcggcgtcat gatcttgcgc acttcgtcgt cgagacgctc
     1561 ttcaaagcgc agatcccggt tcgtgacgat accgatcagt tgcgggcctt ccaccaccgg
     1621 aaagccggaa atgccgtgct gttgcgtgag agcgatcacg tcgcgcactt tcatttgcgg
     1681 cggaacggta atcggatcgc gcaccacgcc cgattcaaag cgcttgactt tcgcgacttc
     1741 gcgggcctgt tcggcagcgg taaggttctt gtgaatgatg ccgacgccgc cgagctgggc
     1801 catcgcaata gcgagccggc cttcggtgac tgtgtccatg gcggcggaca acaggggcat
     1861 attcagggag atcttgcggg taacctgggt tttcaggctg gtgtcgcgcg ggagaacgtt
     1921 ggaaaacgcg ggcacgagga gcacgtcatc gaacgtgagt gctttctgga tcagacgcat
     1981 ggcaaatcct atgggcgcaa aaccgaatta taccgatagt tccccggatt ttcactgccc
     2041 gaacagcagg ttaggtggcg ctgctcgttt tccggcgcaa tttacgggcc taggccgggt
     2101 aggcgattta cccggccgtt tcggtttttc gctcgatttg cgttcgatat aagttcggtt
     2161 ttgcggatac cggcaaggat gcccgtaacc acgcggatcg cccttaccgc gcttccttgc
     2221 gcgtccaccg gcgtccttca atggacccgc cgcgccgcgt cttctcaacc cgcctttgcc
     2281 tcgctacctt cggatcaacc ttcagcggcc gataaatctc caccctgtcg tgatcgacga
     2341 gcaccgcatc cagcgcctgg atttttccaa aaacgcccac tttctgcaca ttcagatcga
     2401 tctcgggaaa ctgtgcgagc aatccactcg cctcaatagc cgcccgcaga gtcacaccct
     2461 ccgccaagga aagcgcacac accgcactct tcccctccgg caacgcataa caaacctcaa
     2521 cggaaagagt catcactttc cataccgctg gtcagcgcgc ttcacgaacg aatccacgaa
     2581 cgtgtgcgcg atatgactga acaccggccc gatgatcttc tcgagaatga tgttcgaaaa
     2641 ctcgtaatgc aacgcgaact cgatcttgca ggcatcggcc cgcaacggcg tgaaccgcca
     2701 gtacccggtg aacttcttga aaggaccgtc catgaactcc atatcaatgg tggtcggccg
     2761 cgtatgaaca ttacgcgtgg cgaaatgctg cttgatgccc ttgaaattga tgtggatctt
     2821 cgcttccatg ctgtgttcgt cgtggcggcc tacttccacg cctccacacc acggcaaaaa
     2881 attcgggtaa tcggcgacat cggtgacgag gtcgaacatc tgctctgcag aatgacgaat
     2941 caatacagtt ttctggacat ctgccataaa gggcgcaacg cgtggcaaga gtgggaagct
     3001 ttgcgggctt tacctcgccc gcgctgctaa aatcaggatt ttaaacgagt taggcacttt
     3061 tcattcatga gcatcatcga caacagaaaa gccttcttcg attacttcat cgaagatcgc
     3121 tacgaggccg ggctcgtgct ggaagggtgg gaagtcaagg cgctccgggc cggccgcggc
     3181 cagatcaagg aaggctacgt catcattcgc gacggagagt tgttcctgat cggcgcgcac
     3241 atcagtccat tgccggaagc atcgacccac attcacccgg acccggtccg cacacgcaag
     3301 ctgctgctgc acagcgaaga gatctcgaag ctcatcagca aggtggagca gaagggtcat
     3361 acgcttgtcc cgctgaactt ccactacaaa ggcggccgcg tgaaatgcga gatcggtctc
     3421 gcaaagggca agaagctcca cgacaaacgc gaaaccgaga aaaagcgcga ttgggaacgc
     3481 gaaaaagcgc aaatcatgcg cggtgccaag cattgagcac gaccagcatg atagtgagca
     3541 tatccaacgc aaaaagggcg tcgaccacgg agtcgacgcc cttttttcat gcggccaggt
     3601 gattcagcat gctgattcag ctagcgccaa gcttcagctc ttacggatca caccgccaga
     3661 tgttccatcg cccttgatga tgctcagcgc cgacgcgatc atcgaactca tctccgacaa
     3721 attccccggc acgatcagcg tattgccctg tttcgcgatg ttcccgaacg cggtgacata
     3781 ttgctcggc
//
LOCUS       DATGBK010001601         1997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_134335, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001601 DATGBK010000000
VERSION     DATGBK010001601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134335"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VKJ77_22480"
     CDS             <1..226
                     /locus_tag="VKJ77_22480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48100.1"
                     /translation="SVGITRLLHYQVAEAVEADALRIILDAFEPDPVPVNLVHASRGQ
                     MPLKMRRFLDFAAPRLRDVFKKVAASVGQV"
     gene            complement(545..1453)
                     /gene="argC"
                     /locus_tag="VKJ77_22485"
     CDS             complement(545..1453)
                     /gene="argC"
                     /locus_tag="VKJ77_22485"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006159539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HMC48101.1"
                     /translation="MDGDQGTTGLQIHERLRNRTDLRLVTLAAAERKDPRRRAEAINA
                     CDIAILCLPDAAAREAVDAIVNPAVRVIDASSAHRTQPDWTYGFPEMTLGQAERIANA
                     RRVTNPGCYPTGAIGLLRPLLHAGLIPGNYPVSIYAVSGYSGRGRAGVEEHEGHDAVN
                     APSYQVYGLELAHKHTPEIRQHAGLAQRPIFVPAYGAFRQGIVLTVPLELRLLAPGVD
                     GATLHTCLARHYAEAAHVHVLPLHESCVLKHLDPQVLNGTNDMRLSVFPNMEHGHVLL
                     SAVFDNLGKGASGAAVQNLNLMLTQQ"
     gene            1601..>1997
                     /locus_tag="VKJ77_22490"
     CDS             1601..>1997
                     /locus_tag="VKJ77_22490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009916068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48102.1"
                     /translation="MREISLDRLRTLVAIADRGSFADAARALHLAPPTVSLHIAELEE
                     RIGAPLLSRKRGHVRPSVIGEVLVERARRLLADAEQALDDIQRQVQGLEGRARLGAST
                     GAIAHLLPQALEVLRQHHPAIDIQIAVLTS"
BASE COUNT          388 a          594 c          630 g          385 t
ORIGIN      
        1 cagcgtcggg ataacgcggc tactgcacta tcaggtcgcc gaagcggtcg aggcggacgc
       61 gctgcgcatc atcctcgatg cgttcgaacc ggacccggtg cctgtgaacc tcgtccatgc
      121 ctcgcgcgga cagatgccgc tcaagatgcg ccgctttctt gactttgccg ccccgcgcct
      181 gcgcgacgtg tttaaaaagg ttgccgcatc ggtcgggcaa gtgtagccag ccccgggttt
      241 cgaccaaatg ggtgaggccg ccgacgttcc tccaacgcgg tcgcatgcgc cgatgcaaac
      301 tgacactccg gggaaccgct ccctttgccg acgatatgct ggacgaaccc aaaaacatcg
      361 gccgttgtac cgctcaaacg gccatttaag gtaagtggac ccgacgggct gttgagggtc
      421 gacttcggca gctcgtcatg gaacccggtg cgaccggctt aagacattcg atgaccgcga
      481 ccaggatggc aataatcgtg gatatagggg tgtgccgtcg aacgccagct taatccatcg
      541 gccactactg ctgcgtgagc atcaggttca ggttctgaac agcagcgccg gatgcgcctt
      601 tgccgagatt atcgaaaacc gcggatagca ggacgtgccc gtgttccatg ttaggaaata
      661 cgctcaagcg catatcgttc gtaccgttca gcacttgcgg atccaggtgc ttcaagacgc
      721 acgattcgtg cagcggcaag acatgtacgt gggccgcctc ggcatagtgg cgtgcgaggc
      781 atgtgtgtaa cgtggcgccg tccacgccgg gtgccagcag ccgcaactcc aagggtaccg
      841 tcaacacgat gccctggcgg aacgcaccat acgcagggac gaagatcgga cgctgcgcga
      901 gcccggcgtg ctgccggatc tccggggtgt gcttgtgcgc gagctccaga ccatatacct
      961 ggtatgacgg tgcgttgacg gcatcgtgcc cctcgtgttc ctccacgccg gcacgaccgc
     1021 gtccggagta gccggacacc gcgtaaatgc tgaccgggta gttgcctggt atgagcccgg
     1081 cgtgcagcag gggacgcagc aagccaattg caccggtcgg atagcaacct ggattggtga
     1141 cccgacgagc gttcgcaata cgctcagcct gtcccagagt catttccgga aagccgtatg
     1201 tccagtccgg ctgtgtgcgg tgggccgaac ttgcgtcgat tactctgacg gcaggattaa
     1261 caatggcgtc cactgcctcg cgcgcggcgg catcgggcag acagaggatg gcgatgtcgc
     1321 acgcgttgat ggcttcggca cgccgccgcg gatctttgcg ttctgcagcg gcaagcgtga
     1381 ccagtctaag gtcggtccgg ttgcgcagcc gttcgtgaat ttgcagcccg gtggtgcctt
     1441 ggtcgccgtc gatgaaacaa ggggagagct catgcgagga atactccggt catgggtaat
     1501 aacaagtaga acgagcccgc tatcttccgc gcaccgctag aatagagaaa gttgaatttc
     1561 ataacgtgaa cattcagttt ttctgaatct ggacgccgac atgcgagaga tcagcctgga
     1621 ccgcttgcgc accctggtcg ccattgccga ccgtggctca tttgccgatg cggcccgcgc
     1681 gttgcacctg gcgccgccaa cggtcagcct ccacattgct gaactcgaag agcgtattgg
     1741 ggctccgctc ctgtcacgca agcgcgggca tgtaaggccg tcggtaatag gagaggtgct
     1801 ggtggagcgc gcgcggcgat tgctggccga cgcggagcag gcgttagacg atattcaacg
     1861 ccaggtgcag ggcctcgaag ggcgcgcgcg gctcggtgcg tcgactggcg cgatcgcgca
     1921 cctgttgccg caagcgcttg aggtgctgcg ccaacaccat cctgctatcg atattcagat
     1981 tgcagtactc acttcgc
//
LOCUS       DATGBK010001602         2582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_274003, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001602 DATGBK010000000
VERSION     DATGBK010001602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2582
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274003"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..1227
                     /gene="hutI"
                     /locus_tag="VKJ77_22495"
     CDS             1..1227
                     /gene="hutI"
                     /locus_tag="VKJ77_22495"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003805202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050480 - imidazolonepropionase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HMC48103.1"
                     /translation="MTDNSVQIWRNARLAARADPADVLENAAIVVRDGRIEWFGAEAQ
                     LPSSFAEADRHDLEGRLVTPGLVDCHTHLVYAGNRAEEFAMRLEGASYEDIAKRGGGI
                     VSTVRNTRAASEDELFAQSLRRLDALLAEGVTALEIKSGYGLDLPTERKMLRVARRLA
                     AARPVTISTTFLGAHALPPEYAGRANDYIAYVCDEMLPTLAAEGLVDAVDVFCERIAF
                     TLEQAERVFDAASKLNLPVKMHAEQLSLMGGAALAAKHHALSADHLEFLDEAGAIAMR
                     EAGTVAVLLPGAFYFIREKQLPPIDLLRRHGVPIALATDSNPGTSPSTSLLLMLNMGC
                     TLFRLSVAEVLAGVTRHGAKALGHAEVNGEITVGAKADFVAWDIETLAELAYWTGLDR
                     CALVVRHGAVTVDKRK"
     gene            1250..>2582
                     /locus_tag="VKJ77_22500"
     CDS             1250..>2582
                     /locus_tag="VKJ77_22500"
                     /EC_number="3.5.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamate deiminase"
                     /protein_id="HMC48104.1"
                     /translation="MTRNSLFAEHARLQDGWRRDVLLEWDDHGTLVTVTADSAQPAGV
                     NKAKGPVLAGMPNLHSHAFQRAMAGLTEYRANPTDSFWSWRDLMYRFAARISPDSIGD
                     IARWLYIEMLKAGYTSVCEFHYVHHSPDGKPYANPAEMAARVVDAGAQTGIGMTMLPV
                     LYQYSGFGEREPTSGQARFVHTPESLLEALVSLRSTQPENGNLRYGVAPHSLRAVSKE
                     SLGRLLSGLDSAFPGAPVHIHIAEQTAEVDACLETLKARPVRWLLDNFDVNERWCLVH
                     ATHVDENEVRAMAASGAVAGLCLTTEANLGDGIFPAHAYLNDGGRFGLGSDSHIAVDW
                     RSELRLLEYGQRLTRRERNVLASTEQVHVADRLFDAAVQGGACATGRSTGALEAGRRA
                     DFIVLDPDHPAIAGHAPDAWLSGVVFCEHGETPVLDVSVGGKLVVEARRHRD"
BASE COUNT          486 a          764 c          831 g          501 t
ORIGIN      
        1 atgaccgata acagcgtgca gatctggcgc aatgcacgcc ttgcagcgcg tgcggatccc
       61 gcagatgtcc tggaaaacgc ggcgattgtc gtgcgcgatg ggcgcattga atggtttggc
      121 gctgaggctc aactaccgtc ctcgtttgcc gaagcggatc gccacgatct tgaagggcgt
      181 cttgtaacgc cgggtcttgt cgattgccac acgcatcttg tctacgcggg aaaccgcgca
      241 gaagaattcg cgatgcggct agaaggggcg agttacgaag acatcgcgaa acgcggtggt
      301 ggcattgtct cgacggtgcg caacacgcgc gccgcaagcg aagacgaatt gttcgcgcag
      361 tcgctgcgcc ggctcgacgc gttgctcgcc gaaggcgtca ccgcgctgga aatcaaatca
      421 ggctacgggt tggaccttcc gaccgaacgc aagatgctgc gcgtcgcacg gcggctcgca
      481 gcggcgcggc cggtgaccat ttccacgacg ttcctcggcg cgcacgcgtt gccgccggag
      541 tacgccggcc gcgccaatga ctacatcgcc tacgtttgcg acgagatgtt gccgacgctc
      601 gcggcagaag gcctggtcga tgccgtcgat gtgttctgcg agcgcattgc gttcacgctc
      661 gagcaagcgg agcgcgtgtt tgacgcggca tcgaaactga atctgcccgt gaaaatgcac
      721 gccgagcagt tgtcgttgat gggcggcgcg gcgctcgcgg cgaagcatca cgcgctatcc
      781 gccgatcacc tcgaattcct cgacgaagcc ggcgcaatcg caatgcgcga agccggcacc
      841 gtcgccgtgt tattgcccgg cgcgttctat ttcatccgcg aaaaacagtt gccgccgatc
      901 gacctgctgc gtcgtcacgg tgtgccaata gcgctcgcca ccgacagtaa tccgggcaca
      961 tcgccaagta catcgctgct gctgatgctc aacatgggct gcacgttgtt ccgtttgtcc
     1021 gtggcggaag tgctcgcggg cgtgacgcgt cacggcgcaa aagcgcttgg tcacgccgag
     1081 gtgaacggcg aaatcaccgt tggtgcgaag gcggattttg tggcgtggga tatcgaaacg
     1141 cttgcggagc tggcgtactg gaccggcctc gatcgttgcg cgctggtcgt gcgccacggc
     1201 gccgtaaccg tggataaacg aaaataagcg gaattgagcg gaacacgcca tgacacgaaa
     1261 tagtttgttt gccgaacacg cgcgtttgca agatggctgg cgtcgcgatg tgctgctgga
     1321 atgggacgat cacggtacct tggtcaccgt tacggcggac agcgcgcaac cggctggcgt
     1381 gaataaagcc aaaggtccag tgctcgccgg catgccgaat cttcactcgc atgcgttcca
     1441 gcgcgcgatg gcggggctca ccgaatatcg tgcgaatcct actgacagct tctggagctg
     1501 gcgcgacctg atgtaccggt ttgccgcgcg catttccccg gacagcattg gcgacattgc
     1561 tcgttggctt tatatcgaaa tgctgaaggc aggctacacg tcagtctgcg agtttcacta
     1621 cgtgcatcac tcgccagacg gcaaacccta cgcgaatcct gccgaaatgg ccgctcgcgt
     1681 ggtcgatgct ggagcacaaa ccggcatcgg catgaccatg ttgcccgtgc tttatcaata
     1741 cagcggtttt ggcgagcgcg agcctacatc cggtcaggcg cgttttgtcc acacgccgga
     1801 aagcttgctc gaagccctgg tttcattgcg ctcgacgcag ccagagaacg gcaacctgcg
     1861 atacggcgtc gcaccgcatt cgctgcgtgc tgtatcgaag gaatcgctgg gccgtttgct
     1921 cagcggactc gacagcgctt ttccaggcgc gccggtgcat atccacatag ccgagcagac
     1981 ggctgaagtc gatgcctgtc tcgagacgct gaaggcgcgg ccagtacgct ggctgctcga
     2041 caacttcgac gtgaacgagc gctggtgcct cgtgcacgcc acgcacgtcg atgaaaacga
     2101 agtccgcgcg atggccgcaa gtggcgccgt cgcgggcctg tgcctgacaa ccgaagccaa
     2161 tctcggcgat ggcattttcc ccgcgcatgc gtatctcaac gacggtggac gctttgggct
     2221 tggctcggac agccacatcg cagtcgattg gcgctcagag ttacgcttgc tggaatacgg
     2281 acaacggctg acgcgacgcg agcgcaatgt gctggcatcg actgaacaag tgcacgtcgc
     2341 ggatcgtctt ttcgatgctg ccgtacaagg tggcgcctgc gctactggcc gctcgaccgg
     2401 tgcgttggaa gcggggcgac gggcggattt catcgtgctc gatcccgatc atccggcgat
     2461 tgccgggcat gcgccggacg cgtggttatc gggcgtggtg ttttgcgaac acggcgagac
     2521 gcccgtgctg gatgtgagtg ttggcggcaa gctcgtggtc gaggcgcgcc ggcatcgcga
     2581 tg
//
LOCUS       DATGBK010001603         2574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_296618, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001603 DATGBK010000000
VERSION     DATGBK010001603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296618"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(184..741)
                     /locus_tag="VKJ77_22505"
     CDS             complement(184..741)
                     /locus_tag="VKJ77_22505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HMC48105.1"
                     /translation="MSDNIYAHDNGVAGDLFAGDGNMFQRVLRLRTTDENRPDDEQST
                     ALSSLNEGSMSLFKTVRSNIVQSIRAFRVQDLADEASKLGQHFLYAYCGQAQSKQEVL
                     ETIATSFLFPKHFGKNYDALYDSLTDLVHKAGSQPGFVIVLEALPVAQKFDKEGRETL
                     LDVFREASEFWAERRVAFRVFYSFA"
     gene            complement(747..1265)
                     /locus_tag="VKJ77_22510"
     CDS             complement(747..1265)
                     /locus_tag="VKJ77_22510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HMC48106.1"
                     /translation="MKRAWLCGFIVALSLVLSGCGKSGPDSQSPAANTSAGASQAEPP
                     HVLQDKDKLKSDPRAESWRDTASAGSEPSQTTVDAAQLPKQAIVTLRRIEAGGPFPYE
                     KDGIVFGNRERMLPPHPRGFYHEYTVPTPRARDRGARRIVCGGPRRQIDNCFYTDDHY
                     VSFKRIAGLTSG"
     gene            1305..1445
                     /locus_tag="VKJ77_22515"
     CDS             1305..1445
                     /locus_tag="VKJ77_22515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48107.1"
                     /translation="MKDVRVSLMAPGINVGSEDARFSGAFCVVSDRYMRLAGAFSLMI
                     EK"
     gene            complement(1914..>2574)
                     /locus_tag="VKJ77_22520"
     CDS             complement(1914..>2574)
                     /locus_tag="VKJ77_22520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HMC48108.1"
                     /translation="AMLVKKGEADGMICGTISTTHRHLHFVDQVIGKKEGCSVYAAMN
                     ALVLPGRHIFIVDTHVNVDPTPEQLCEITIMAAEEVRRFGIVPKIALLSHSNFGTSNA
                     PTAIKMRDTLALLRERAPDLDVDGEMHGDVALDANLRREVLPESTLVGDANLLVLPNI
                     DAANISYNLLKTAAGNNIAIGPMLLGAAQPVHVLTASATVRRIVNMTALLVADASAVA
                     R"
BASE COUNT          517 a          791 c          704 g          562 t
ORIGIN      
        1 gccctcgctg caatccaacc gcatatcaaa cgaaaaaaag ccagtcagcg cctgtattca
       61 acagacgacg agcggctttc taacttcttt gcgccaagaa gacgcagcgc cttgcgcgca
      121 aaactgggtc cggcactcgg gcgctcaccg cttacgttcg agcgaacggc tcgggcaaac
      181 ggttcatgcg aacgagtaaa acaccctgaa cgctacacgc cgttccgccc agaattctga
      241 ggcttcgcga aacacgtcga gcaaagtctc gcgcccttct ttgtcaaatt tctgcgcaac
      301 gggcagcgct tccagcacga tcacgaaacc cggttgcgaa ccggctttgt gtacgaggtc
      361 ggtcagactg tcgtacagtg cgtcgtagtt cttcccgaag tgcttgggaa acaaaaacga
      421 cgtcgcgatg gtttcgagca cttcttgctt gctctgggcc tggccgcaat acgcgtagag
      481 aaaatgctgg cccagcttgc tcgcttcgtc ggcgagatcc tggaccctga aagcgcggat
      541 cgactgcacg atattcgatc gtaccgtctt gaaaagactc atagacccct cgttcaatga
      601 tgacagcgcc gtgctctgtt cgtcgtcggg tcgattttcg tctgtcgtgc ggagtcgcaa
      661 aactcgctgg aacatgttgc catcgccggc gaaaagatca cccgcgacac cgttgtcgtg
      721 cgcgtagatg ttgtcgctca tgccgttcat cccgaagtta atcccgcaat gcgtttaaaa
      781 ctcacgtaat ggtcgtcggt atagaagcag ttgtcgatct gccgacgggg cccgccacat
      841 acaatccgac gtgcgccgcg atcgcgggcg cgcggcgtag gaacggtgta ttcgtggtaa
      901 aagccgcgcg ggtgcggcgg cagcatacgc tcgcggttgc caaacacgat gccgtctttc
      961 tcatacggaa acggcccgcc agcctcgatc cgccgcagcg tcacaatggc ctgcttcggc
     1021 aattgtgcgg cgtcaacggt agtctgcgac ggttccgaac ccgctgaggc ggtatcgcgc
     1081 cagctctctg cgcgcggatc gcttttcagc ttgtccttgt cttgcaacac atgcggtggt
     1141 tccgcctgcg acgctcctgc tgaggtgttc gcggccgggc tttgggagtc cggcccgctt
     1201 ttcccgcagc cgctcaacac caaagatagc gccacgataa acccacaaag ccacgcgcgc
     1261 ttcacgaaac ctgtccccgc tttgaaccca gaaatatgac gaccatgaaa gacgtaaggg
     1321 tatcgctaat ggcaccggga atcaatgttg gttcggaaga tgcccgtttt tcaggcgctt
     1381 tttgcgtcgt atctgaccgt tacatgcggc tcgccggcgc tttttcattg atgatcgaaa
     1441 aatagctctc caaccatatt taggataaat cctaggtatt tttatcttat ttagtttaat
     1501 aatgacttca tgcatggttt ggggagtgga gccagcgtcg cctctctcgc gaagctccca
     1561 cggcgcaaag tcggcaccat cgctgtttgg aggagaaagc aaaccccttg catgcctcgt
     1621 ggcgtgccgg atcgtccggc acgccgtttt ttcgttccgg tgcccgaagt gaccgtcagg
     1681 aatccgctca ttaagtcgat catcaagccg actaaacact gcaactatgc cgtgcaatcg
     1741 tcgcggaaat gaaaaagagg gattgcgaac acttgtcgca atccctcttt ctatttctac
     1801 aatccctctt cccggagttc cactcgaatc cgccagccct gcgcgggctc tggtcccgcg
     1861 ggttctggct ctgcgagctt tgagcccgcg ctttgagccc gcgattcgaa cccttaccgc
     1921 gccactgccg aggcgtccgc caccagcagc gccgtcatgt tgacgatccg gcgcactgtc
     1981 gccgacgccg tcagcacatg cacaggttga gccgcgccca gcagcattgg cccaatggcg
     2041 atgttgttgc cggccgccgt cttcagcagg ttgtacgaaa tattcgcggc gtcaatattc
     2101 ggcagtacga gcaaattcgc gtcgcctacc agcgtggatt ccggcaggac ttcgcggcgc
     2161 agattggcat ccagcgccac gtcgccgtgc atttcgccgt ccacatccag atccggcgca
     2221 cgctcgcgca gcaatgccag cgtgtcgcgc atcttgatgg ccgtcggcgc gttgctggtg
     2281 ccgaagttcg aatgcgacag cagagcgatc ttcggcacga taccgaaacg gcgcacttct
     2341 tccgccgcca tgatcgtgat ctcgcaaagc tgctcggggg tagggtccac gttcacgtgc
     2401 gtatcgacaa tgaagatgtg ccggcccggc agcaccagcg cattcattgc cgcatagacg
     2461 ctgcagcctt ccttcttgcc gatcacctga tcgacgaaat gcagatggcg gtgcgtcgtg
     2521 ctgatcgtgc cgcagatcat gccgtccgct tcgcccttct tgaccagcat cgcg
//
LOCUS       DATGBK010001604         2325 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_65538, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001604 DATGBK010000000
VERSION     DATGBK010001604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65538"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..991
                     /locus_tag="VKJ77_22525"
     CDS             <1..991
                     /locus_tag="VKJ77_22525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012732755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC48109.1"
                     /translation="PTELLEGSGLALTQLDDPNAELLAAQELRVISNLLKLTGAPDQL
                     GIELGLRHRFSAYGVWGYGLISSATMRDALTLALRFIPLTFAFTLISYHEEGNLGVLT
                     FGEPDLDRDLTRFLVEGDMAGAAVLLAEVAGPDFRIERLTFRAEPNRTNPRRGRARSV
                     FGATPYYGAKMNSLSFDLAYLDRRPPQANPITATMCEQMCAELIERRRARSGTSTIVR
                     QYLSVPGSSLPDLAAMARIINVSERTLKRRLKEEGTSFRTLLMESRRAVAEELLKDRQ
                     LSMADIALRLGFSDSSTFSQAFKRWHGVAPNVYRKAVRSAVPVRVLKTPGGRC"
     gene            1234..>2325
                     /locus_tag="VKJ77_22530"
     CDS             1234..>2325
                     /locus_tag="VKJ77_22530"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HMC48110.1"
                     /translation="MNDFARLPGHRFLHSPGPSRVPDEVLHAMSRQPMDLADPRLDRC
                     IAACEAGLKRVLQTEQSDVFLYAANGHGAWEAVIANLVAPGQAVLVPGTGHFSESWAV
                     QAEAMGGRVIRTPWVEGRPIDPADIEAVLREDVKREIVAVFIVHTDTASGITNDLPAM
                     RAAIDRADHPALLVVDVVASLAAAPFAMDTTRINVVLGASQKALMVPPGLAFVSVDAT
                     AMEVSRRNSTPRFYWDWERRRSPLSYRKFCGTPPQSLIAGLEASLRLIFREGLTEVLE
                     RHRRIAEAVHAAVECWSEAGAMRFFCEVPAARSVSVTTIEVSAGVDPEAIRSVARERF
                     EVAIAGGLGPLAGRAFRIGHLGDINPAMIL"
BASE COUNT          425 a          671 c          757 g          472 t
ORIGIN      
        1 gcccaccgag ctgcttgagg gcagtggcct tgcgctcacc caactcgatg atcccaacgc
       61 cgaactattg gccgcgcagg agcttcgtgt catcagcaac ctgttgaagc tgacgggcgc
      121 gccggatcaa ctcggcatcg aactaggact tcgccatcgc ttctcggctt acggcgtgtg
      181 gggctatgga ctgatcagca gcgcgaccat gagagatgcg ttgacgctcg cgcttcgttt
      241 cattccgctt acctttgcgt tcacgttgat ctcgtatcac gaggaaggca atcttggtgt
      301 gctgacattc ggcgagccgg acctggatcg tgacctgacg cggtttctcg tggaaggcga
      361 catggcgggc gcagcggtcc tgctcgccga agttgccgga ccggatttca ggatcgagcg
      421 gctgacgttc agggcggagc cgaaccggac gaatccccgg cgcgggaggg cacgcagtgt
      481 ttttggggcg accccgtatt acggggccaa gatgaacagt ttgtcgttcg atctggcgta
      541 tctggaccgg cggccgccgc aggccaatcc gatcaccgcg accatgtgcg agcagatgtg
      601 cgcggagctt atcgagcgcc ggcgagcgcg gtccgggaca tcgacgattg tgcggcaata
      661 cctcagcgtg cccggcagtt cattgcccga tctggctgcg atggccagga tcatcaatgt
      721 gagtgaacgc accttgaagc gccggctcaa ggaggagggt acgtcgttca ggacgctctt
      781 gatggagtcg cgtcgcgcgg tagcggaaga gctgctaaag gaccggcaac tcagcatggc
      841 ggacattgcg ttgcgcctcg gctttagcga ttcctcgaca ttttcccaag ccttcaaacg
      901 atggcatggc gtcgcgccga atgtttatcg gaaagcagtt cggagtgctg ttccggtacg
      961 cgtacttaaa acacccggtg ggcgatgctg atgctgcctg tttgtcttag ggcgttcgtg
     1021 gagcgggctt atggttcttt aagatcacgc agcgttcaac ggcttaaccg tcagccattc
     1081 acccgccaag cgaatcgaaa gtgcatgctc cgacgcagcc ctgtagaatc tttttgacca
     1141 acaattagcc agggttgcaa tgaaactgac tgacgacaaa gctcacgcgc gctcacactc
     1201 cagcggcaat cacccatttc gaatccttct cgcatgaacg acttcgcccg tttgcccggt
     1261 catcgctttc tgcattcgcc gggacctagc cgcgtaccgg atgaagtcct gcacgcaatg
     1321 agccgtcagc cgatggacct ggctgacccg cgactggatc gctgtattgc cgcctgcgaa
     1381 gcaggcctga agcgcgtgct gcagacggag cagtcggacg tcttcctcta tgccgcaaac
     1441 gggcacggcg cctgggaagc ggtcatcgcg aacctggttg cgccgggtca ggcggtgctg
     1501 gtgcctggca cgggccactt ctcggagtcg tgggcggtgc aggccgaggc aatgggcggc
     1561 cgtgtgatcc ggacaccgtg ggttgaagga cgtccaatcg atccggcgga tattgaagct
     1621 gtgctgcgag aggatgtgaa gcgcgagatt gtcgcggtct ttatcgttca cacggacacc
     1681 gccagcggca tcaccaacga tctgcctgct atgcgggcgg cgatcgaccg ggccgatcac
     1741 ccagcgctgc tcgtggtcga tgtagttgca tcgcttgcag ccgcgccgtt cgccatggat
     1801 acaacgcgca tcaacgtggt tctcggtgcc agccagaagg cgttgatggt gccgccggga
     1861 ctcgcgtttg tctcggtcga cgcaacggca atggaggtct cgcgccgtaa ttccacgccg
     1921 cgtttctact gggactggga gcggcggaga agcccgctgt cgtaccgcaa gttttgcggc
     1981 acaccgccgc aaagcctgat cgccggactg gaggcatcgc tcaggttgat ctttcgggaa
     2041 ggtctgaccg aggtgctgga acgccatcga agaatcgcgg aagcggtaca tgctgcggtg
     2101 gaatgctgga gcgaggcggg cgcaatgcgc tttttctgcg aggtgccggc ggcgcgctca
     2161 gtgtcggtga cgaccatcga ggtgagcgcg ggtgtcgatc cggaagcaat ccgcagcgtt
     2221 gcacgcgagc gctttgaagt cgcgattgcg ggtggtctag ggccgctcgc ggggcgcgca
     2281 ttccgtatcg ggcatcttgg cgacatcaac cctgcgatga tcctt
//
LOCUS       DATGBK010001605         1535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_319650, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001605 DATGBK010000000
VERSION     DATGBK010001605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319650"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1535
                     /locus_tag="VKJ77_22535"
     CDS             <1..>1535
                     /locus_tag="VKJ77_22535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014193792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008983 - protein-glutamate
                     O-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HMC48111.1"
                     /translation="VVEMPQRLLDIWNNAKRIALPELEPTTPGPDDHSENRSDIRADI
                     RADNRGEAELALQAILATLRTRTGHDFRFYKRATMLRRIERRLQVNGVPDLIAYRDLL
                     RDNPRETAALLKDMLIGVTSFFRDREAFESLERAVLPALFHSKADGDQVRAWVAGCSS
                     GEEAYSLAMLLCEQRDALHSSANIQVFATDIDESAVARARAGLYPESIMTDVRPSMLR
                     QFFIKTDSRYEVVKSVREKILFAMHNVLRDPPFSRLDLVSCRNLLIYLDRGVQNQVLE
                     MFHYALYPNGYLFLGTSESADSVEELFSVVDKKNRIYRAKAAKLPNRPSLGAPLLLTQ
                     GRFAHDEEAGSALLPGRRNFSFSALHQRVLEQYAPPRVIVNRDSKIVHMSDNAGRFLR
                     YVGGEPSSNMIAVVLPELRLDLRTALFQAAQTGNSVEARRVKLQRNGLSSYVNMTVRP
                     FHDAAADADFLLVLFDEVQEAMTEDKAAVAYQAGNDTVMQQLEQELHASKEQLQTTIE
                     QYET"
BASE COUNT          295 a          489 c          477 g          274 t
ORIGIN      
        1 gtggtggaga tgccgcaacg gctgctcgac atatggaaca acgccaagcg tatcgcgctg
       61 cccgaactgg aaccgacaac gcccggtccg gacgaccatt ccgaaaaccg ttccgacatc
      121 cgcgccgaca tccgcgctga caaccggggc gaggccgaac ttgcgttgca ggccattttg
      181 gcgacgttgc gcacccgcac cggccacgac ttccgcttct acaagcgtgc gaccatgctg
      241 cgccggatcg agcggcgcct gcaagtcaac ggcgtgccgg acctgatcgc ctaccgcgac
      301 ctgctgcggg acaacccgcg tgaaacggcg gccttgctca aggacatgct gatcggcgtg
      361 accagttttt tccgcgatag ggaagcgttc gagtcgctcg agcgcgctgt gctgccagcc
      421 ttgttccaca gcaaggccga cggcgatcag gttcgcgcgt gggtcgcggg atgctcgtcg
      481 ggcgaggaag cgtattcgct tgccatgctc ctgtgcgagc agcgcgacgc gttgcattcc
      541 tcggccaata tccaggtgtt cgccaccgac atcgacgaaa gcgccgtcgc gcgcgcacgg
      601 gccggactgt atcccgagtc gatcatgacc gacgttcgcc cctcaatgct gcggcaattt
      661 ttcatcaaga ccgactcgcg ctacgaggtg gtgaaaagcg tgcgcgagaa aatcctgttc
      721 gccatgcaca acgtgctgcg ggacccgccg ttctcgcggc tcgacctggt ttcctgccgc
      781 aatctcctga tctatctcga ccgaggtgtg cagaaccagg tgctggagat gttccactac
      841 gcgttgtacc ccaacgggta cctgttcctc ggcacgtccg agtcggcaga ctcggtcgaa
      901 gagctgttca gcgtggtcga caagaagaac cgcatatacc gggcgaaggc ggcgaagctg
      961 ccgaatcgcc cttcgctggg cgcgcctttg ctgctgaccc aggggcgctt tgcgcatgac
     1021 gaagaggcgg ggtccgcgct gctcccgggg cgccgcaatt tctcgttcag tgcgttacac
     1081 cagcgcgtgc tcgagcaata cgcgccgccc agagtgatcg tgaaccgcga ttcaaagatc
     1141 gtgcatatgt cggacaacgc aggacgtttc ctgcggtatg tcggcggcga accgtcgagc
     1201 aacatgattg ccgtcgtgct gcccgaactg cggctcgacc tgcgtaccgc gttgttccag
     1261 gccgcgcaga cgggcaatag cgtggaggcc cggcgcgtca agctgcagcg caacggtctt
     1321 tcttcatacg tcaacatgac tgtgcgcccg ttccatgacg ccgccgccga cgccgacttc
     1381 ctcctcgtgc tgttcgacga ggttcaggag gcaatgacgg aagacaaggc cgcggtggcg
     1441 tatcaggcgg gcaatgacac cgtgatgcag caactcgaac aggagctgca cgcgagcaag
     1501 gaacaactgc agaccacgat cgagcagtac gagac
//
LOCUS       DATGBK010001606         2117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_157748, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001606 DATGBK010000000
VERSION     DATGBK010001606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157748"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..668)
                     /locus_tag="VKJ77_22540"
     CDS             complement(<1..668)
                     /locus_tag="VKJ77_22540"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HMC48112.1"
                     /translation="MQAVPVRTTGRDPYALRTGIGLAAVHIGALGVLIPHTFSWSGVA
                     VAVALYYLTGAIGICLCFHRVLTHRSLKVVKPLEYAIAVLGTLALQGGPIEWIATHRA
                     HHAHTDRDGDPHDVHRGLRWAHMQWLYRYNDARLTKAEQVRLAPDLVGDKFYMFLENT
                     YLLWQIALGIVLFAFGGWSWVIYGIFVRCVATYHITWLVNSTAHHDGYQTYRTGDKST
                     NNWWV"
     gene            822..1124
                     /locus_tag="VKJ77_22545"
     CDS             822..1124
                     /locus_tag="VKJ77_22545"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009549402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HMC48113.1"
                     /translation="MRLTDIERDKLLLSYAAELAWRRRARGLRLNHPEAIAILSSFVL
                     EGARDGCTVADLMDRGRTVLSRADVMDGVPEMLDEVQMEATFPDGMKLVTNHEPIQ"
     gene            1121..1417
                     /locus_tag="VKJ77_22550"
     CDS             1121..1417
                     /locus_tag="VKJ77_22550"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018913504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HMC48114.1"
                     /translation="MRPGEVFPAEGTIELRAGRRRTTLQVSNTGDRPVQVGSHAHFFE
                     VNDALEFDRDAAYGMCLDVAAGTAIRFEPGIERPVDLVAVGGEARIAGLRNRAR"
     gene            1414..>2117
                     /locus_tag="VKJ77_22555"
     CDS             1414..>2117
                     /locus_tag="VKJ77_22555"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017234020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HMC48115.1"
                     /translation="MKMDRAAYARLYGPTTGDRLRLGDTNLIVEIEHDFATYGDEITF
                     GGGKVIRDGMGQHPTATRDEGVLDTVITNAVVIDASGIFKADIGLRDGRIAGIGKAGN
                     PWLQDGVTPGMTVGASTEVIAAEGAIVTAGGVDAHVHYISPQQVDVAIGSGVTTLIGG
                     GTGPASGTNATTCTPGAWHLSRMLAAVDALPVNIGFLGKGNASGEEALREQVAAGAMG
                     LKLHEDWGSTPSAIDTA"
BASE COUNT          436 a          595 c          687 g          399 t
ORIGIN      
        1 acccaccaat tgttggtgga cttgtcgccc gtgcgatagg tttggtagcc gtcatgatgc
       61 gctgtgctgt ttaccagcca cgtgatgtga taggttgcga cgcaccggac gaagatgccg
      121 tagatgaccc atgaccaacc gccgaacgcg aacagcacga tgcccagcgc aatttgccac
      181 agcaagtacg tgttttcgag aaacatgtag aatttgtcgc cgactaaatc cggcgcaaga
      241 cgaacctgtt cggcctttgt caggcgcgcg tcgttgtagc gatagagcca ctgcatgtgc
      301 gcccagcgta agccgcggtg cacgtcatgc ggatcgccgt cgcgatcggt gtgcgcgtga
      361 tgcgcgcgat gcgtcgcgat ccactcaatc ggtccgccct gaagtgcgag cgtgccgaga
      421 acggcaatcg catattcgag cggctttaca acttttagac tgcgatgcgt aagcacgcgg
      481 tggaagcata aacaaatgcc gatcgcgccg gtcaaataat acagcgcaac ggcaacggca
      541 acgccgctcc agctaaacgt gtgtggaatg agaacaccga gcgcgccgat atgaacggcg
      601 gctagaccga tgccagtacg cagcgcgtac ggatctcggc ccgtagtacg gacgggaaca
      661 gcttgcatag actatagcgt gcgactgtgc gggccgtatt cctggtcatt ttacctagaa
      721 ccgtgcaagg attgcgttcg gcatacctag gacccgtctg aacctacggc ttgctccatt
      781 tggcgaaagg cggaattggg cgtggatcgg caaccaagcg catgcggctg accgacatcg
      841 agcgcgacaa actcttgctg agctacgctg ctgagttagc gtggcggcga cgcgcgcgcg
      901 ggctgcgttt gaaccatccc gaagccatcg caattctttc atctttcgtt ttggagggcg
      961 cgcgcgacgg gtgcacggtt gccgatttaa tggatcgcgg tcgcacggtg ctatcccgcg
     1021 cggatgtgat ggacggcgtg ccggaaatgc tcgatgaggt gcagatggaa gcgacatttc
     1081 ccgacggcat gaaactcgtg acgaatcacg agccgatcca gtgaggcccg gcgaagtatt
     1141 tccggcagag ggcaccatcg aattgcgtgc cggccggcgc cggacgacgc tgcaggtttc
     1201 aaacaccggc gatcggcccg tgcaagtggg ctcacacgcg catttctttg aggtcaacga
     1261 tgcgttggaa ttcgatcgcg acgcggccta tggcatgtgt ctggatgtag cggcgggcac
     1321 ggcgattcgt tttgaacccg gtatcgaacg gccggtcgat ctggtcgcgg tcggcggcga
     1381 agcgcgcatc gccggcttgc gaaatcgggc gcgatgaaaa tggatcgcgc ggcgtacgcg
     1441 cgcctatacg ggccgacaac cggcgaccgc ctgcgcttag gcgataccaa cttaatcgtc
     1501 gagatcgaac acgacttcgc gacctacgga gatgaaatca cgttcggcgg cggcaaggtt
     1561 attcgcgacg ggatgggcca gcatccgacc gcgacgcgcg atgaaggcgt gctcgatacg
     1621 gtcatcacga acgctgtcgt gattgacgcg agcggcattt ttaaggccga cattggtctg
     1681 cgcgacggac gtatcgcggg catcggcaaa gcgggcaatc cgtggctgca ggacggtgta
     1741 acgcccggca tgaccgtcgg cgcgtcgacc gaagtgatcg ctgcagaagg cgcgatcgtt
     1801 accgcgggcg gcgttgatgc gcacgtgcat tatatctctc cgcagcaagt cgacgttgct
     1861 atcggcagcg gcgtcacgac gttaattggc ggcggcacgg gccccgcatc gggaacgaac
     1921 gcgacaacgt gtacgcccgg tgcatggcat ttgtcgcgca tgcttgccgc cgtcgacgca
     1981 ttacccgtga acatcgggtt tctcggtaaa ggcaatgcat cgggtgaaga agcgctgcgc
     2041 gagcaagtcg cggccggcgc gatgggcctg aagttgcacg aggattgggg atcgacgccg
     2101 tccgcaatcg atacggc
//
LOCUS       DATGBK010001607         2344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_296643, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001607 DATGBK010000000
VERSION     DATGBK010001607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296643"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..808)
                     /locus_tag="VKJ77_22560"
     CDS             complement(<1..808)
                     /locus_tag="VKJ77_22560"
                     /inference="COORDINATES: protein motif:HMM:NF015509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HMC48116.1"
                     /translation="MIGFFLLSLPVFGVIGVGWAATRAHLLASGALDALNVFSFRFAL
                     PALVLRLIAGQPLRQSFNPGFYAGYLASGAVVFMLVLGVSRLTAASTVAAAGAHATTA
                     TVSNLGFLGPPLMLAFFGERGAGPLAMAILAEIMVLLSVGGVLMGANGDARRGIGSQI
                     LRGTVFNPVVTAIVLGAVLAGTGRALPEPITRFLAFLGGAAGPTALFALGGALALQRL
                     DRGTAVAACLISLVKLLVYPLFTWLVLRHVMTLEPFWVQAGVLIACLPSAG"
     gene            complement(805..1731)
                     /locus_tag="VKJ77_22565"
     CDS             complement(805..1731)
                     /locus_tag="VKJ77_22565"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006478526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC48117.1"
                     /translation="MQCDSPKQFGGRIMTTQTVGFIGLGAMGEAMALNLAKAGTPLVI
                     WNRSPAKTATLVAAGAQLALDAAEVFARAPTVILMLVDGAAIDAVLDRGGPTFASRVH
                     GRTIVHMGTTSPSYSRGLEADIRSAGGHYVEAPVSGSRKPAEAGQLVAMLAGDADAVG
                     AFRPLLAPMCRETMVCGPVPNALLMKLSVNLFLIALVTGLAEAMHFAQRNGLDLSQFL
                     AVLNAGPMASDVSRVKAPKLIDRDFAVQAAISNVLENNRLIAEAARENGIASPLLDVC
                     HALYGEALGLGLGEADMVAVLRAIETRSGLQP"
     gene            1797..>2344
                     /locus_tag="VKJ77_22570"
     CDS             1797..>2344
                     /locus_tag="VKJ77_22570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004628401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48118.1"
                     /translation="MTQNLDINLVRTFVAVADHGSMTVAANSLHLTQGAVSQQIKRLE
                     ESFDCSLFEREGRRLELTQTGERFLGKAKRLLGMNDEIWADMATRPLQGPLRIGVPYD
                     LVGTCFPPIFKAFAEACPYVEISLMCATSPDLSKALASGSLDLAVIEAATEEAAGECL
                     RVERLVWVGARGGMAHLKRPLPV"
BASE COUNT          481 a          737 c          753 g          373 t
ORIGIN      
        1 tcccggctga gggtaagcac gcaatcaaaa cgcctgcctg cacccagaac ggttcaagcg
       61 tcatcacgtg tctgagaaca agccacgtga acagcggata cacgagaagt ttcacgagac
      121 tgatcaggca tgcagcgaca gcggtgccgc gatcaagacg ctgcaaggcg agggcgccgc
      181 ccagcgcaaa gagcgccgtt ggacccgccg cgccaccgag gaacgccagg aagcgcgtaa
      241 tcggctcagg cagcgcgcgt cccgtgcccg ccagcacggc gcccaacaca attgccgtga
      301 caactggatt gaacacggtg cctcgaagga tctgggaacc gataccgcgc ctggcgtcgc
      361 cgttcgcgcc catgagcacg ccgccgacgg agagcagcac catgatctcc gccaggatcg
      421 ccattgccag cgggcctgct ccacgctcgc cgaagaaggc gagcatcaat ggcggcccaa
      481 ggaaacccag gttgctcacc gtggccgtag tcgcgtgagc gccggccgcc gcgacagtgg
      541 acgcggcggt caagcgcgac acgcccagaa ccagcatgaa gacgaccgcg cccgatgcaa
      601 ggtagcccgc atagaagccg ggattgaacg attgacgcaa cggctgcccc gcgatgagcc
      661 gcaaaaccag cgctggaagc gcaaaacgaa acgagaatac gttgagcgca tccagcgcgc
      721 ccgaggccag gagatgcgcg cgcgttgctg cccatcccac cccgatgacg ccgaagaccg
      781 gcaggctgag caggaagaaa ccgatcacgg ttgcaagccg ctgcgcgttt cgattgccct
      841 gagcactgca accatgtcgg cttctccgag gccaagtcca agcgcttcgc catagagcgc
      901 gtggcagacg tccagcagcg gggaggcgat tccgttttca cgcgccgcct cggcgatcag
      961 gcggttgttc tccagcacgt tggagatcgc ggcttgcacc gcgaaatccc ggtcgatgag
     1021 tttcggcgcc ttcacgcgtg atacatcgct cgccatgggg ccggcgttca gcacggccag
     1081 gaactggctg agatcgaggc cgttgcgctg ggcgaaatgc atggcttcgg ccagccccgt
     1141 gacgagtgcg atcaggaaca agttgaccga tagtttcatc agaagggcgt tcggaacagg
     1201 accgcacacc atggtctcgc ggcacattgg ggcgagcagc gggcggaagg ctcctacggc
     1261 atccgcgtcg ccggcaagca tcgcgacgag ctggcctgct tcggcgggct tgcgcgagcc
     1321 cgagacgggc gcctcgacgt agtgcccgcc agccgagcgg atgtcggctt ccagaccgcg
     1381 cgagtaggac ggggaggtcg tgcccatgtg gacaatcgtg cggccgtgta cgcgggacgc
     1441 gaaggtgggg ccgccacggt cgaggacggc gtcaatggcg gcgccatcga ccagcatcag
     1501 gatgacggtc ggagcacgcg cgaatacctc ggccgcatct agtgccagct gtgcgccggc
     1561 tgcgacgagc gtcgccgttt tcgccggcga gcggttccag atcactaacg gcgtgccggc
     1621 tttcgcgagg ttcagcgcca ttgcttcccc catcgcgccg agtccgatga accccaccgt
     1681 ctgtgttgtc atgatccttc caccgaattg cttaggtgaa tcgcactgta ttccgccctg
     1741 tcacattagc aaatcgatac ttattgatgc agcgcattac gatacataat gtgtccatga
     1801 cccagaatct cgacatcaat ctcgtccgga ccttcgtcgc tgtggcggac catggcagca
     1861 tgaccgtggc cgcgaacagc cttcatctga cgcaaggggc ggtgagccag cagatcaagc
     1921 ggctcgaaga atcgttcgat tgcagcctgt tcgagcgaga gggacgccgc cttgaactga
     1981 cccagaccgg cgaacgtttt ctgggcaagg ccaaacgcct gcttggaatg aacgacgaaa
     2041 tctgggcgga tatggcaacg cgtccgctac agggaccgct gcggatcggc gtgccgtatg
     2101 acctcgtggg aacgtgcttt ccgcccatct tcaaggcgtt cgcggaagcc tgcccctacg
     2161 tggagatatc gctcatgtgc gcaacgtcgc cagatctctc caaagcgctc gcgagcggct
     2221 cgcttgacct ggcagtcata gaagccgcca cggaagaagc ggcaggcgaa tgcctgcggg
     2281 tcgaacgact tgtctgggtg ggtgcaagag ggggtatggc gcatctgaag cggccgttgc
     2341 ccgt
//
LOCUS       DATGBK010001608         2987 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_274078, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001608 DATGBK010000000
VERSION     DATGBK010001608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2987
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274078"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VKJ77_22575"
     CDS             <1..187
                     /locus_tag="VKJ77_22575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DctA"
                     /protein_id="HMC48119.1"
                     /translation="GIARAVTNLIGNCVATVVVAVWEKDIDRVRATRVLNQDAELLFV
                     PADHAGASHGHEPAHAV"
     gene            239..1249
                     /gene="alc"
                     /locus_tag="VKJ77_22580"
     CDS             239..1249
                     /gene="alc"
                     /locus_tag="VKJ77_22580"
                     /EC_number="3.5.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004037 - allantoicase activity [Evidence
                     IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allantoicase"
                     /protein_id="HMC48120.1"
                     /translation="MASPVLDPNAPAFTRRFMNLADPRLGATALFASDEFFAPKERML
                     DPQPAVFIPGKYDDNGKWMDGWETRRKRTTGYDFCIVKLARPGTIHGIDLDTSHFTGN
                     FPPAASIDACTSDSATPQDDADWREIVPATTLQGNQHHYLPITDARAYTHLRVNIYPD
                     GGIARLRVYGQPKVDWARVERGSRVDLAAIENGAYLVAANNQHFGPASQMLMPGRGVD
                     MGDGWETRRRREPGNDWAIVALAHPGVIHAIEVDTAHFKGNFPDGCSLQAARVAGGTD
                     ESLVTQAMFWPVLLPQQKLSADNIHRFESEVAALGPVTHVRFNMFPDGGVSRLRLFGA
                     IE"
     gene            1256..1774
                     /locus_tag="VKJ77_22585"
     CDS             1256..1774
                     /locus_tag="VKJ77_22585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate lyase"
                     /protein_id="HMC48121.1"
                     /translation="MNTLTLEPLTRAAFKPFGDVIELDGAQHFPINGGTTERFHDLAR
                     VDVGAEEGGRPLINVFRGQPRAQPVEIAMMERHPLGSQAFLPLGVVSYLVVVAPAGEF
                     DVSRLRAFLTRGWQGVNYARGVWHHPLIVLDAAADFIVIDRGGKEANCEETYLLESLR
                     LIEGDLVCSSAT"
     gene            complement(1880..>2987)
                     /locus_tag="VKJ77_22590"
     CDS             complement(1880..>2987)
                     /locus_tag="VKJ77_22590"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020068013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HMC48122.1"
                     /translation="LMRTLVFCTLFYVAFAITDIAALGYSRTTFVLFLGRCCVALTGA
                     LSLRVVSFPHVSLASVRAAASAFEVVGFTVFMLITWLRPTGMAAHCMSMCILLIVVYN
                     FIQNKLLWALLISLGATIAFIVICAVSRTLDSSSLLTSSMLLAFTNVLGYVTARRHNR
                     LVRDEFCQHALLRNLSVRDYLTGCFNRRYLTDVLFDAELQRTRRYKLKLAVILCDIDY
                     FKQINDTYGHPAGDAVLRTFAAMLLAHTRHRVDSVVRYGGEEFLLLLPQTDLAGATVL
                     AERMRQSFELTTTRAWDGREVRSTASFGVVAMNCAGESGLVTEESLVGAADAQLYRAK
                     NAGRNRVCASAAPGVWDAPDRDDGQVGVFAITQT"
BASE COUNT          590 a          914 c          953 g          530 t
ORIGIN      
        1 cggcattgcg cgcgccgtca ccaacctgat cggcaactgc gtcgcgacgg tggtcgtggc
       61 cgtgtgggag aaggatattg accgtgtccg cgccacgcgc gtgctgaacc aggatgccga
      121 actgcttttc gtcccggccg atcacgccgg cgcaagtcat ggccacgagc ccgcgcacgc
      181 tgtctgagcg cgcgctcttc gtcgccatcc cctgaatcgt tttaaaggaa ctctcttcat
      241 ggctagtccc gttctcgacc ccaacgctcc ggcttttacc cgccgcttca tgaatctcgc
      301 cgatccgcgt ctcggcgcca cggcgctctt cgccagcgat gaattcttcg cgcccaagga
      361 gcggatgctc gacccgcagc cggccgtgtt catcccgggc aagtacgatg acaacggcaa
      421 gtggatggac ggctgggaaa cgcgccgaaa gcgtactacc ggctacgatt tctgcatcgt
      481 caagctggcg cggccgggca ccattcacgg catcgacctg gacacgagcc acttcaccgg
      541 caacttcccg ccggcggcgt cgattgatgc ctgcacgagc gacagcgcca caccgcaaga
      601 cgacgccgac tggcgcgaga tcgtgccggc gaccacgctg cagggcaacc agcaccacta
      661 tttgccgatc actgatgccc gcgcctacac gcacctgcgc gtgaatatct acccggacgg
      721 cggcatcgcg cgtttgcggg tatatggcca gccgaaggtg gactgggcgc gtgttgaacg
      781 cgggtcgcga gtggatcttg cggcgatcga aaacggcgcc tatctggtgg cggcgaacaa
      841 ccagcatttc ggaccggcat cgcagatgct gatgcccggc cgcggtgtgg atatgggcga
      901 cggttgggag acgcggcgcc gccgtgagcc cggcaacgac tgggcgatcg tcgcgctggc
      961 gcaccccggc gtgatccacg cgatcgaagt cgataccgcc cacttcaagg gcaatttccc
     1021 cgatggctgt tcgctgcagg cagcacgtgt cgcgggcggc acggacgaat cgcttgttac
     1081 tcaggccatg ttctggccgg tgctgctgcc gcaacaaaag ctgtcggcgg acaatatcca
     1141 tcgattcgaa agcgaagtgg ccgcgctcgg gcccgtcacg cacgttcgct tcaacatgtt
     1201 cccggacggc ggcgtgtcgc gcttgcgcct gttcggtgcg atcgagtaag aagacatgaa
     1261 cacgcttacg ctcgaacctc tgacgcgcgc ggcgtttaaa ccgttcggcg atgtaatcga
     1321 actggacggc gcgcagcatt tcccgatcaa cggcggcacg acggagcgct tccacgacct
     1381 ggcgcgcgtg gatgttggcg cggaggaggg aggccggccg ctcatcaacg tgttccgggg
     1441 ccagccgcgc gcgcaacccg tcgagatcgc gatgatggag cgtcacccgc tgggcagtca
     1501 ggcgttcctg ccgctcggcg tggtgtcgta tctggtggtg gtcgcgccgg caggtgaatt
     1561 cgatgtgtca aggctgcgcg catttctcac acgcggctgg cagggcgtga attatgcgcg
     1621 gggcgtctgg catcatccgt tgatcgtgct ggatgctgct gcggacttta tcgtgatcga
     1681 tcgtggcggg aaagaggcaa attgtgagga aacctatcta ttggaaagtc tgcggctgat
     1741 agagggtgat ctcgtttgct cgtccgccac ttgaaggctg atagccgggc cttgctgctt
     1801 ttgttcgcgc agcatggccc ggcttcaaat ccatgatgtt gctggtgtcc gcgaaccgat
     1861 aatcgcagcg cctgtaaaac taggtctgtg tgatggcgaa tacgcccact tgcccgtcat
     1921 cccggtccgg cgcatcccaa acgcccggcg ccgcgctggc gcaaacccga ttgcgaccgg
     1981 cgttcttcgc gcgatacaac tgcgcatcag cggcacccac caggctttct tctgtcacga
     2041 gacccgattc gcccgcgcaa ttcatagcca ctacaccgaa actcgcggtg gagcgcactt
     2101 cgcggccgtc ccacgcacgc gtggttgtca gctcgaacga ttggcgcatg cgctcggcga
     2161 gcaccgtcgc gccggcgaga tccgtttgcg gaagcagcaa caggaattcc tcgccgccgt
     2221 agcgaaccac gctgtcgacc cggtgccgtg tgtgggcaag cagcatggca gcgaaggtcc
     2281 gcaagactgc gtcgcctgcg gggtgcccgt aggtatcgtt gatctgcttg aagtagtcga
     2341 tgtcgcacag gatgaccgcg agcttcaact tgtatcggcg ggtgcgctgg agttcggcgt
     2401 cgaacaacac gtcggtgaga taccgccggt tgaagcagcc ggtgagatag tcgcgcacag
     2461 agaggttgcg caacaaggcg tgctggcaga actcatcgcg gaccaggcga ttgtggcggc
     2521 gagccgtgac atagccgagc acgttggtga aggccagaag catcgacgac gtcagcaacg
     2581 atgacgaatc gagcgtccgc gataccgcgc aaatgacgat aaacgcgatt gtcgcgccca
     2641 gggatataag caaagcccag agcagcttgt tctgaatgaa gttgtacacc acgatcaaca
     2701 gaatgcacat agacatgcag tgcgccgcca ttccggtggg acgaagccag gtgatcaaca
     2761 tgaagacagt gaagccgacc acttcgaacg cactcgcggc cgcccgcacg gaggcgaggg
     2821 aaacatgcgg aaagcttaca acgcgcaggc tgagcgcacc cgtcaacgca acgcagcagc
     2881 gccccaggaa aagcacgaag gttgtacggg aataaccgag ggcggctatg tcggtaatcg
     2941 cgaaagcgac gtaaaacagg gtgcagaaga cgagcgtgcg catcagc
//
LOCUS       DATGBK010001609         4316 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_227641, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001609 DATGBK010000000
VERSION     DATGBK010001609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227641"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..832)
                     /locus_tag="VKJ77_22595"
     CDS             complement(<1..832)
                     /locus_tag="VKJ77_22595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC48123.1"
                     /translation="MEQTLQTSLLIGGEFVPGAGDVEDVLNPATGDVIARIAEASLDL
                     VQAAVAAASRAFPAWAKTVPKDRANLLLKLADAIEARATEFARLESLNCGKPYLGALN
                     DEIPAVADVFRFFAGACRTQHGQLAGEYLPGYTSMVRRDPLGVVASIAPWNYPLMMAA
                     WKIAPAVAAGNTVVLKPSEQTPLTTLKLAELVAAIFPPGVINVVTGRGDTVGAPLIAQ
                     PDVRMISITGDVSTGQKILEAASRTVKRTHLELGGKAPVIVFDDADLEQVVAGLRTFG
                     Y"
     gene            complement(1212..2129)
                     /locus_tag="VKJ77_22600"
     CDS             complement(1212..2129)
                     /locus_tag="VKJ77_22600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009916926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48124.1"
                     /translation="MSLSLRSVRYFIAVAEAESVTGATQSLNISQSVITDAIKGLETE
                     VGAQLFVRHARGMVLTHAGHQFLRHAHQILAAVRNAQQAMSSRPDTMTGRLNIGVTTM
                     MTGYFLPYLLDHFRRVFPKVEVNVIEDQRDYIEHLLVNGELDVAVLIVSNIENSQAIE
                     TESLITAAWRLWLPANHALRGLGSISLREIADEAMIMLKVDELEDNTNTYWRASGLKP
                     NVVMRTASVEAVRSLVATGAGLSILPDVLYRPWSLDGDRLEVRNIMEEMPKIDIGIAW
                     RRGLTQSETAQNFLVVAREHTRGHAKISI"
     gene            2459..2752
                     /locus_tag="VKJ77_22605"
     CDS             2459..2752
                     /locus_tag="VKJ77_22605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48125.1"
                     /translation="MLQKNKTLTLAAIMLGACASDVSPTELATLSVSLVVQESCVIQS
                     GGEPTVVAKPSVSCLHGQPYDIALAALDPAQPVSAVQYADRGGKQSTVWMVGF"
     gene            complement(2806..3756)
                     /locus_tag="VKJ77_22610"
     CDS             complement(2806..3756)
                     /locus_tag="VKJ77_22610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009892468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat U domain-containing protein"
                     /protein_id="HMC48126.1"
                     /translation="MFLVFVVALALGVPERASAQSCSAVASAISFGSVSPISGAAVAA
                     TGSVSVTCTWPAITLVPNAQVCLNLGGTSPRSMTNGTNLLQYDLYQDAGHSLAWGSIY
                     SGTTPISLTLVKPALTTSVTQAVTIYGQVSPNQPAVPTIGNASTLYSQTFGGSQTSIN
                     AGFYLLVAPTCASLTASGGTFPFSASATVVNNCNISATNLNFGATGLLSHALNATASI
                     TAQCTNGDAYQIALNGGATANVAARQMTRSGGGGAVNYQLYVDAGLTTTWGDGTAGTT
                     PATGTGTGNSQVLTVYGVVPAQTTPAPGTYSDTITATISF"
     gene            complement(3765..>4316)
                     /locus_tag="VKJ77_22615"
     CDS             complement(3765..>4316)
                     /locus_tag="VKJ77_22615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006484012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FimD/PapC C-terminal domain-containing protein"
                     /protein_id="HMC48127.1"
                     /translation="LMDGSVQPSRRIYDGFALVSTDGVAGIPVLHENRVIGVTDGGGH
                     FLVPDLNSYQDNQVGIDGMKLPADARIDTTEMHLVPQSQSGVLARFGVTRYSAASVIL
                     QGPDGKLLPPGAAVHHEESGKDTIVGYDGLTFVEGLQPDNHLVIESGSLHCGVEFAYE
                     RPGDGSLPTIGPLTCRPTAANAR"
BASE COUNT          863 a         1348 c         1288 g          817 t
ORIGIN      
        1 agtacccaaa ggtgcgcagg cccgcgacga cctgctccag atcggcgtcg tcgaatacga
       61 tcacgggcgc cttgccgccc agttccagat gcgtgcgctt gaccgtgcgc gacgccgcct
      121 cgagaatttt ttgccccgtc gatacatcgc cggtaattga aatcatgcgc acgtccggct
      181 gcgcgatcag cggtgcgcca accgtgtcgc cacgcccggt caccacgttg attaccccag
      241 gcgggaagat tgcggccacg agttcagcaa gcttgagcgt ggtgagcggc gtctgctcgg
      301 acggcttgag gacaaccgtg ttacccgccg ccacagctgg cgcgatcttc caggcggcca
      361 tcatcaacgg atagttccag ggcgcgatcg atgccaccac gcccagcgga tcacgccgga
      421 ccatgctcgt atagccaggt aaatactcgc ccgcaagctg cccgtgttgc gtgcggcaag
      481 cgcctgcaaa gaaacgaaat acgtccgcca ccgcggggat ctcgtcgttg agcgcaccga
      541 gatacggctt gccgcaattg agcgactcga gccgcgcgaa ctcggttgcc cgtgcctcga
      601 tggcatcggc gagtttaagc agcaggttcg cgcgatcctt cggcacggtc ttcgcccacg
      661 cgggaaacgc gcgactcgcc gcagcgacgg ccgcctgaac cagatccagc gatgcttcgg
      721 caatccgcgc gatgacgtcg cccgtcgcgg ggttcaggac atcttccaca tcccccgcgc
      781 cgggtacgaa ttcgccgcca ataagaaggc tggtttgcag ggtctgctcc atatgactgt
      841 ctctctcttg ttggaagaag aatgtgccgc ccgctgcgct ccgtccttaa agtgcgctct
      901 gcgcaagcta cgaggcatgc agggatttta gggttgtgat ttttttggcc gccagccagc
      961 atcacagata ggagctatcg ataattccga acgggagccg catttacgcg gttttacgac
     1021 gtacggttgc cggagcggct ggcggggaaa caagcaagtt gcagtggtct ttgggccagt
     1081 gccggctttg attactacgc gggaagccgc gccaaggagt ctctagcgct caaacggacc
     1141 atagaattac gctctccgcg taccacagag gcctccgcaa aacagaacga aaccttcgtg
     1201 atatcggaaa ttcagataga aattttggcg tgtccacgcg tatgttcgcg cgcgacgaca
     1261 agaaagttct gggccgtctc cgactgcgtg agcccgcgac gccacgcaat gccaatatcg
     1321 atcttcggca tctcttccat gatgttgcgc acctcgagcc ggtcaccatc gagcgaccat
     1381 gggcgataaa gcacatcggg gagaatcgac aggcccgcgc ccgtggcaac aagactgcgc
     1441 accgcttcca ccgacgccgt gcgcatcacc acgttcggtt tcaggccgga cgcgcgccag
     1501 taagtattgg tgttgtcctc gagctcatca accttgagca tgatcatcgc ttcgtcggca
     1561 atttcgcgca gggagatgct gccgagcccg cgcaatgcat ggttcgccgg cagccataaa
     1621 cgccacgcgg ccgtgatcag cgactcagtt tcaatcgcct gcgagttctc tatgttcgac
     1681 acgatcagca cggccacgtc gagttcacca ttcaccagca gatgttcgat gtaatcgcgc
     1741 tggtcctcga tcacgttgac ctccaccttc gggaacacgc ggcgaaaatg atcgagcaga
     1801 tacggcagga agtagcccgt catcatggtc gtgacgccaa tgttcaaccg cccggtcatg
     1861 gtgtcgggcc tcgacgacat ggcctgctgc gcattgcgca ccgcagcgag gatctggtgc
     1921 gcatgacgca ggaactggtg ccccgcatgc gtgaggacca tgccgcgggc gtggcgtacg
     1981 aagagctgcg cgccgacttc ggtctcaagc cccttgatgg cgtcggtgat gaccgattgc
     2041 gagatgttga gcgactgggt cgcgcccgtc accgattcag cttcagcgac agcgatgaaa
     2101 tagcgaacgc ttctgagtga caggctcatg gaactccggc gtcgggtcga taggttgaca
     2161 ggtagtcaag ccgcgactat agctgagccg ataaaaccac ggtcccccaa tgcttaccgc
     2221 tgcatgttgc aaattcggga acgagcgacg tctggttcga cagcctgaaa cgaacgggtc
     2281 gaccggtcgc cgtagccgct cgagaagctt attctgcgca atgtcgctaa agtctcgcac
     2341 ccatgtgccg atagaactag agagcggttt cggggagtga gggagtgaat tcggaccgct
     2401 ttgggagtgc cgcgaacagg acacttgcgc accaacggca tcatcattcc attttcatat
     2461 gctgcaaaaa aataaaactc tcacactcgc ggcaatcatg ctgggcgcgt gtgcatcgga
     2521 cgtctcaccc acggaacttg ctacgctgtc ggtcagcctg gttgtgcagg aaagctgtgt
     2581 gatccagtcg ggcggcgagc cgacggtcgt cgcgaagccc agcgtatcgt gcctgcatgg
     2641 ccagccttac gacatcgcac ttgccgctct cgatccagcc cagcccgtct ctgcggtgca
     2701 gtatgccgat cgcggcggca agcagtccac ggtgtggatg gtgggcttct aagtacccgt
     2761 tccagcaagc ttccgagccc cacgccgggc tgccgccatg cggcttcaaa agctgatcgt
     2821 ggcggtaatc gtgtccgaat acgtacccgg cgcgggcgtg gtttgcgcgg gcaccacgcc
     2881 atacacggtc agcacctgcg aattgccggt gcccgtgccg gtcgccggag tggtgcccgc
     2941 ggtgccgtcg ccccaagtgg tggtcaaccc tgcatcgacg tagagttggt agttgaccgc
     3001 accgcctcct cccgagcgtg tcatctgccg cgccgccaca ttggcggtcg caccgccgtt
     3061 caacgcaatc tggtacgcat cgccgttggt gcattgcgcc gtaatcgaag cagtcgcgtt
     3121 caacgcatgg cttaacaagc cggtcgcgcc gaagttgagg ttcgtcgcac tgatgttgca
     3181 gttgttcacg accgttgcgg aagcactgaa tggaaaggta cctcctgaag cggtcagcga
     3241 cgcgcaagtc ggcgctacca gcagataaaa gcccgcattg atcgatgtct ggctgccgcc
     3301 aaaagtctgg ctgtacagtg tgctggcgtt gccgatagtg ggtacggccg gctgattcgg
     3361 ggagacctgt ccgtagatgg tcacggcctg ggtcacactc gtggtaagcg cgggcttgac
     3421 cagcgtgagc gatatcggcg tggtgccgga atagatcgat ccccatgcca gcgagtgccc
     3481 cgcgtcctga tacaagtcgt actgcaacag gttggtgccg ttcgtcattg agcgcggact
     3541 ggttccgccc aggttcaggc acacctgcgc gttcggtacc agcgtgatgg cgggccacgt
     3601 acacgtcacg ctgacgctgc cggtcgcagc gactgccgcg ccgctgatcg gactcaccga
     3661 accaaaacta atcgccgacg caaccgccga gcaactctgc gcgctcgcgc gctccggcac
     3721 acccagcgcc agggccacga cgaacacaag aaacatgatc cgtctcatcg cgcgttcgcg
     3781 gcagttggac ggcaggtcaa cgggccgatt gtcggcagcg agccatcgcc cggtcgctcg
     3841 taggcaaact cgacgccgca atgcagtgaa ccactttcga tgactaaatg attatcgggc
     3901 tgcagaccct cgacaaaggt cagtccatcg tagccaacga tcgtatcctt gccgctttcc
     3961 tcgtgatgaa ctgccgcccc cggcggcaac aacttgccgt cgggtccctg cagaatcacc
     4021 gaagcagcgc tgtaacgcgt caccccgaaa cgcgccagca cgcccgactg cgactgcggc
     4081 acgagatgca tctcagtcgt atcgatacgc gcatcggcgg gcagcttcat gccgtcgata
     4141 cccacctggt tatcctggta cgagttgaga tccggcacaa gaaaatggcc gccgccatcg
     4201 gtcacgccga tcacgcgatt ttcgtgcagc acgggaatcc cggccacgcc atcggtcgac
     4261 accagcgcga agccgtcgta gatgcgtcgc gacggctgca cgctgccgtc catgag
//
LOCUS       DATGBK010001610         2006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_157816, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001610 DATGBK010000000
VERSION     DATGBK010001610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157816"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..573)
                     /locus_tag="VKJ77_22620"
     CDS             complement(<1..573)
                     /locus_tag="VKJ77_22620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease activity regulator RraA"
                     /protein_id="HMC48128.1"
                     /translation="MKIHHYADSLATVAPRDVVVSDETLAKLAKVSSGSLTTQLFKHG
                     YRQPALVGLRALNKHVEPFAGRAFTMRFIPAREGIDTYGTMTTKPNMDNLQWQGVEQV
                     KPGDVLVIDSQNDPRAASAGNILVTRLLARGARAIITDGALRDGSEIANLPLPAYARE
                     ITATTRISYHHVADLQVPIGCAGVAVYPGDI"
     gene            746..>2006
                     /locus_tag="VKJ77_22625"
     CDS             746..>2006
                     /locus_tag="VKJ77_22625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HMC48129.1"
                     /translation="MAIGEGTASLDKALGVLDLIGAAPHGMSNAELLDTAGLPKTTLY
                     RILATLVERGLVRRDQVRRVYRLGFRYLELVRNAYLMPDLVAAASAELRSLRDLTGET
                     SYLAVLDGGAVLSLERCDGAHSQRSAATLGQSKPLHCTGQGKAILSRLPKDECEALVR
                     SITLEPLTPHTITDRRRLQIELGITTARGYAIDDEEIVLGVRCVAAPIVDSAGQVRGA
                     LSVAGPAYRLSLARLELLGPELAEAARRVGSQLAVSKHQPGAEEVEPVSEAWAFHGAF
                     PVWSQPSGCLYWADTLAPAVHCFDGKTDRIVARLDAPITAMQLYGDGIIVVHGASHSR
                     LGANGELVRIADTSAWNDPAVKALCTAPDGGSWAAYWNEAATDCQLGVIGEDGRFKSH
                     WHFGERIEAMTWASDSVTAYAVAPDSGT"
BASE COUNT          352 a          628 c          668 g          358 t
ORIGIN      
        1 gatgtcgccc gggtacaccg ccacgccggc gcagcctatc ggcacctgca agtccgccac
       61 atggtgatac gagatgcggg tggtcgccgt gatctcgcgg gcataagccg gcagcggcag
      121 gttggcgatc tcgctgccgt cgcgcaatgc gccgtcggtg atgatggcgc gggcgccacg
      181 cgcaagcaaa cgggtgacca ggatgttccc cgcggaagcc gcgcgcggat cgttctggct
      241 gtcgatcacg agcacgtcgc cgggcttcac ctgctccacg ccctgccact gcaggttgtc
      301 catgttcggc ttggtggtca tcgtgccgta ggtatcaatg ccctcgcgcg ccgggatgaa
      361 gcgcatcgta aaagcgcgcc cggcgaacgg ttcgacatgc ttgttcagcg cacgcaaacc
      421 caccagcgcc ggttgccggt aaccgtgctt gaaaagctgc gtggtgagag agccgctgct
      481 gactttcgcc agcttcgcga gcgtttcgtc gctcaccacc acgtcgcgag gcgcgacggt
      541 ggcaagtgaa tctgcatagt gatggatctt cactggagtg tcctgttgta gaggccagag
      601 gcgtgaactc gaagtgccag ttccacactc tggaacctga ctcgatgttt cttcgttcac
      661 cgtggatcga atgctaatcc ggggatccgt gcgtgaaaac cggtgatatc ctcatttcgc
      721 cccttgagtt ccaacggatg ggaatatggc aataggagaa ggaaccgctt cactggataa
      781 ggcgctgggc gtgctcgacc tgatcggcgc ggcgcctcac ggcatgagca acgcggagtt
      841 gctggacaca gccggcctgc ccaagacaac gctgtaccgg attctcgcga cgctggtcga
      901 gcgtgggctc gtgcggcgcg atcaggtcag gcgggtgtat cggctcgggt tccgctatct
      961 cgaactcgtg cgcaacgcgt acctgatgcc cgatctcgtg gccgcagcaa gcgccgaatt
     1021 acgctcgctg cgggacctga cgggcgagac gtcgtatctg gccgtcctcg atggaggtgc
     1081 cgtgctgtcg ctggaacgtt gcgacggtgc gcactcgcag cgctccgccg cgacgctcgg
     1141 ccaaagcaag ccgctgcatt gcacgggtca gggaaaagcg atcctgtcgc gcttgcccaa
     1201 ggacgaatgc gaggcgctcg tgagaagcat cacgctcgag ccgttgactc cgcacaccat
     1261 tacggatcgc cgccgcctgc agatcgaact gggcatcacc acggcacgcg gctacgcgat
     1321 cgacgacgag gaaatcgtgc tgggcgtgcg ctgcgtggca gcgccgatcg tcgattcggc
     1381 gggacaggta cgcggcgcgc tgagtgtcgc cgggccggcg tatcgactca gccttgcacg
     1441 gctcgaactg ctcggcccgg aactcgccga agcggcgcgc cgcgtgggtt cgcaactcgc
     1501 cgtgagcaaa catcagccgg gcgcggagga agtcgagccc gtcagcgaag cctgggcgtt
     1561 ccacggtgcg tttcccgtgt ggtcgcagcc gtcgggctgc ctctactggg ccgatacact
     1621 cgcgcccgcg gtgcattgct tcgacggcaa gacggaccgc atcgtcgccc ggctcgatgc
     1681 accaatcacc gccatgcagc tctatggcga tggaatcatc gtggtgcatg gcgcctcgca
     1741 ctcccggcta ggcgcaaatg gagaactcgt gaggatcgcc gacacgtccg cgtggaacga
     1801 ccctgcggtg aaggcacttt gcacggctcc ggacgggggc tcctgggccg cgtactggaa
     1861 cgaagctgcc accgactgtc agttgggcgt gatcggcgag gatggccgtt tcaagtcgca
     1921 ttggcatttc ggcgagcgga ttgaagccat gacctgggcc agcgacagcg tgaccgccta
     1981 cgcagtcgcg cccgattcgg gaaccg
//
LOCUS       DATGBK010001611         2195 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_65612, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001611 DATGBK010000000
VERSION     DATGBK010001611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65612"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..694)
                     /locus_tag="VKJ77_22630"
     CDS             complement(<1..694)
                     /locus_tag="VKJ77_22630"
                     /inference="COORDINATES: protein motif:HMM:NF026177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HMC48130.1"
                     /translation="MSGELSKLGRQQVQSGATGLAGYWDEKKDQVRLLTQQVAIQDAI
                     RRDVGAKNTKLLSGSLTNIARQAGLSFLTVVDLQGKVIGRANGGASGVKLGSPFVTRA
                     LTGETVSTATRLSAAELTAEELEPQVAADVKSADGKTSHKAETGLGLVAAAPISDANE
                     RTIGAIYGGVVMNHYYEVVDQATRALGGKAAIILDNSIVASSISRPDGTRLVDTDVAA
                     PIDAIKSNKSFLG"
     gene            complement(910..>2195)
                     /locus_tag="VKJ77_22635"
     CDS             complement(910..>2195)
                     /locus_tag="VKJ77_22635"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HMC48131.1"
                     /translation="VWHAVLFGLTGVLLVAFLGMDAPAASEESDAAFLGSGRLALQPG
                     LNGTLGPSLANLTAGVRDVASGDLTKNLAVADGPLSELGVGLNKLIFGMRDFLGSMHE
                     NATHLGRSGAQLRDTAATSLAVIEGSAIAQQQLDDGIVEQSSIIASALQKVNVMSDAI
                     TSVAGSAEQQTRSLDETAMSVTAMSVSIEEVAAQVDSLLTISSETSLTADRGGSAIHT
                     IVEAMDTIRQTISELASDISQLGTNSSQIGDIVKVIDRIAEQTNLLALNAAIEAARAG
                     EHGRGFAVVASEIRKLADGSVAATKEIAGHIGSTQSVITEVTRAMKRLNERVEESVAS
                     TDNASTALREIVEAVLNSNNQISQISSVTRSMSDSSYAVIRSIQEITSSVAANLRSTQ
                     EMASHSGEVSSAFDSIATISSQNASSVEVLTYVNA"
BASE COUNT          465 a          717 c          546 g          467 t
ORIGIN      
        1 cgcccaaaaa cgatttgttc gattttatcg catcgatcgg tgcggccaca tccgtgtcga
       61 ccaaccgtgt tccgtcgggg cgagaaatcg agcttgcaac gatcgagttg tccaaaatga
      121 tcgctgcttt tccgcccagc gcgcgcgtcg cctgatcgac cacttcgtag taatggttca
      181 tgacgacgcc gccgtaaatt gcgccgatcg tccgttcgtt cgcatcgcta atcggcgccg
      241 cggcgaccag gcctaaaccg gtttcagcct tatgcgaggt tttgccgtcg gcacttttta
      301 catcagcagc aacttgtggt tcgagctctt ctgccgtcag ttccgccgca ctcaagcgcg
      361 tggccgtgct gaccgtttcg ccggtgagcg cgcgcgtcac aaacggtgaa cccaatttaa
      421 cgccactggc gccgccgttt gcccggccga tgactttgcc ttgaagatcg acaacggtca
      481 agaacgacaa accggcctgg cgcgcgatgt tggtcaacga cccgctcagc agcttcgtat
      541 tcttcgcgcc gacgtcgcgc cggattgcat cttgaatcgc aacttgctgc gtgagcagcc
      601 ggacttgatc tttcttctcg tcccaatagc cggccagacc agttgcgcca ctttgcactt
      661 gctgccgtcc gagcttactg agctcgcccg acatcgtcgt attggcggca aacgcgctaa
      721 tcgcaaagaa caccaggatg ccgaagacca gcgtgccgat gagtcgtacg cgcagtccta
      781 aattcatacg ttcgcttcct ttgtctggtg ttcggtgatc ttgtaccggt tgagctgacc
      841 gtcgatggat ttggcttgct gattcatctc ttcgaccgac gagagaatcg cttgcgcagc
      901 cgatgtgacc taggcattga cgtacgtcaa cacctcgacc gatgatgcat tttgacttga
      961 gatcgtcgca atagaatcaa acgccgacga cacctcaccc gagtgcgacg ccatttcttg
     1021 ggttgaccgc agattcgcgg cgacggaact cgtgatttct tgaatcgatc ggataacggc
     1081 atacgagctg tcgctcatcg aacgcgtaac cgacgatatc tgcgaaatct gattgttgct
     1141 gttcagaacc gcctcaacga tctcgcgcaa agcagttgat gcgttatccg tcgacgcaac
     1201 gctttcttca acccgttcgt tcagccgttt catcgcccgt gtaacttcgg taataaccga
     1261 ctgcgtcgaa ccgatatgac cggcaatctc tttggtcgcg gctacgctgc cgtcggccag
     1321 cttccgaatt tccgaagcaa caaccgcaaa cccgcgccca tgctcgcccg cccgtgccgc
     1381 ttcaatcgcc gcgttaagcg cgagcaaatt cgtctgctcc gcaatgcgat cgataacctt
     1441 aacgatatcg ccgatctggc tcgaattcgt gccgagctgc gaaatgtcgc tggccaactc
     1501 cgatatcgtc tgacgaatcg tatccatcgc ttcaacgatc gtgtgaatcg cagacccgcc
     1561 tcgatccgcc gtgagcgacg tctccgaaga aatcgtgagc aacgaatcaa cctgtgccgc
     1621 aacttcttca atagacacag acatcgcagt aaccgacatc gccgtctcat caagactacg
     1681 cgtctgctgc tccgccgaac cggcaacgct ggtgatcgca tccgacatca cgttgacctt
     1741 ctgcaacgcc gaagcgataa tacttgactg ctcgacgata ccatcatcga gctgctgctg
     1801 cgcaatcgcc gacccttcga taaccgccag cgacgtcgcc gccgtatcgc gcaattgcgc
     1861 cccggaccgc cccaggtgcg tcgcattctc atgcatcgac cccaagaaat cgcgcatccc
     1921 aaaaatcagc ttatttaagc ccacgcccaa ttcagatagg ggaccatccg cgacggcaag
     1981 attcttggtc aagtccccgc tagccacatc acgcacccca gccgtgaggt tagccagact
     2041 cggcccaagc gtcccattca agcccggctg cagcgcaagc cgccccgacc ccagaaacgc
     2101 cgcgtccgat tcctcagagg ccgccggcgc gtccattccc agaaacgcca cgagcagtac
     2161 cccggtcagc ccaaagagca ccgcatgcca cacgg
//
LOCUS       DATGBK010001612         1710 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_88308, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001612 DATGBK010000000
VERSION     DATGBK010001612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88308"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1710
                     /locus_tag="VKJ77_22640"
     CDS             <1..>1710
                     /locus_tag="VKJ77_22640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004553375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HMC48132.1"
                     /translation="DELPRRSRTALVEFGLPYAADPAITRHVAAFLKRLDAQSRDALG
                     ASDTLQTSMPDTLLLNGGVFRAKALSGRLASALGTWRQQPLHVLQNDHPDVAVARGAV
                     AYGLARAGHAPRIGGGSPRSYFLVLDDDAQASQGVCLLPRGTEEGHEVHLEDRVFALR
                     LGHPVRFHLVSTVADTAWQPGELVDLTAGDFVRLPPVATVVQQQDASGPRDRPVRLTT
                     SLTELGRLEMHCIATDDASQRWLLEFQLRRDDAEHDVSAASRNPSLDKAIELIDRTFG
                     ARSANVDPKEVKRLRAGLEQLLGPRQSWDSALLRELFGALWERAGRRRRSADHERLWL
                     NLAGYCVRPGFGYPLDEWRIEQLWSLFDDGIQYVNEGQVWSEWWTLWRRAAGGLHEDA
                     QLQVLDAMAWLQAAAGTKRHKLPFDPTKVGHADMLRLSASLERITVDRKIDIAEQLLV
                     RLQRPSENHQGWWAIGRIGARRPFYGSAHGVVPADVATRWLDAIVALDWKKVEPAVFA
                     AAQIARMTGDRSRDLQEPIRETVVRRLEAVNAPPAWADMVREVVTLDNADTGRVFGES
                     LPAG"
BASE COUNT          301 a          523 c          572 g          314 t
ORIGIN      
        1 ggacgaactg cctcgacgat cgcggaccgc gctcgtcgag ttcggcttgc cctacgcggc
       61 cgatccggca atcacgcggc acgtcgcagc gtttctgaaa agactagacg cgcagtcgcg
      121 cgatgcattg ggcgcgtcgg atactttgca aacgtcgatg cccgatacct tgctgctcaa
      181 cggtggcgtg ttccgggcca aagcactctc cgggcgtctg gcgagtgcgc tgggtacatg
      241 gcgccagcag cctctgcacg tgttgcaaaa cgaccatccg gacgttgctg tcgcgcgtgg
      301 cgcggtcgct tacggccttg cccgcgcggg ccacgcaccg cgcattggcg gtggctcgcc
      361 ccgcagctac ttcctcgtcc tcgacgatga cgcacaggca tcgcagggcg tgtgcctgtt
      421 gccacgcgga accgaagaag gccacgaggt acatctcgag gatcgcgtat ttgcgctgcg
      481 actcgggcat ccggtgcgct tccatctggt ctctaccgtc gccgacacgg cctggcagcc
      541 aggcgagctt gtcgacctca ctgcgggtga cttcgtccgc ttgccgccgg tcgcaacggt
      601 ggtacagcag caggacgcaa gcgggcctcg cgaccgaccg gtcagactca caacatcact
      661 gacggaactc ggccggctgg agatgcattg cattgcaacc gacgacgctt cgcaacgatg
      721 gctgctcgag ttccagttgc gacgtgacga cgctgagcac gacgtctccg cggctagtcg
      781 aaatccgtcg ctcgacaagg ccatcgaact catcgaccgc acgttcggcg cccgatcagc
      841 gaatgtcgat ccaaaggaag tgaagcgcct gcgcgcggga ctcgaacagc tactgggccc
      901 gcgtcagagt tgggatagcg cactgcttcg cgaactgttc ggggcgctct gggagcgcgc
      961 gggccggcgg cggcgttccg cagatcatga gcgcctatgg ttgaatctgg cgggatactg
     1021 tgtgcgcccg ggatttggtt atccgctcga cgaatggcgc attgaacagc tttggtcgct
     1081 gttcgacgat ggcattcagt acgtcaacga gggccaagtg tggtcggaat ggtggacctt
     1141 atggcgtcgc gcggcgggcg ggctgcatga ggatgcacag cttcaggtgc tcgatgcaat
     1201 ggcctggctg caggctgctg cgggcacgaa gcggcacaag ctgccattcg atcccacgaa
     1261 ggtgggccat gcggacatgc tgcgcctttc cgcgtcgctt gaacgcatca ctgtcgatcg
     1321 caagatcgat atcgcggaac agcttctggt ccggcttcag cggccctcgg aaaatcacca
     1381 gggctggtgg gcaattggac ggattggtgc acgtcggccg ttctatggca gcgcgcatgg
     1441 tgtcgtgccg gcggacgtgg cgacccgatg gctggacgcc atcgtcgcgc tggactggaa
     1501 aaaggttgag ccggccgtgt ttgccgcagc gcaaatcgct cgcatgacgg gcgaccgttc
     1561 aagggatttg caggagccga tccgcgaaac tgtcgtgcga cgactcgaag ccgtcaatgc
     1621 accgccggcg tgggccgaca tggttcgcga ggtcgtgacg ctcgataacg cagacaccgg
     1681 gcgcgtattc ggagagtcgc tgccagccgg
//
LOCUS       DATGBK010001613         4158 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_227756, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001613 DATGBK010000000
VERSION     DATGBK010001613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4158
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227756"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VKJ77_22645"
     CDS             <1..257
                     /locus_tag="VKJ77_22645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hemin uptake protein HemP"
                     /protein_id="HMC48133.1"
                     /translation="RSNTLRLRRPVERSAAATISRPRTAAVTTARPTPSSSVSESGER
                     SERSLRSDTLLQGHSHISIMHNGETYQLRATRLGKLILTK"
     gene            complement(556..969)
                     /locus_tag="VKJ77_22650"
     CDS             complement(556..969)
                     /locus_tag="VKJ77_22650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HMC48134.1"
                     /translation="MRTKSVLTDADVKTIAAAAEAHALANKWCVAIAVVDDGGHLLHL
                     HRLEGAGASTAEMSAGKARTAALGRRETKVYEDMIKQGRTAFLSAPMTAMLEGGVPIV
                     VGADIVGAVGVSGVKSDQDAAVARAGIAALGIESV"
     gene            complement(1041..2447)
                     /locus_tag="VKJ77_22655"
     CDS             complement(1041..2447)
                     /locus_tag="VKJ77_22655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HMC48135.1"
                     /translation="MSDVMNRPGRLQQAGQWMQQHGSMIRGIQWVVVAVYAFLILVPA
                     VLPLPDGTAHLWSNLTLAAQFVFWGIWWPFVLLSMVMLGRVWCGVLCPEGALTEFASK
                     FGRGWAIPRWLRWGGWPFVAFGITTIYGQMVSVYQYPKAVLLVLGGSTVGAMIVGVLY
                     GREKRVWCKYLCPVNGVFSLLARLAPFHYKVNEDAWRRSYKEGEHGHRVIPVNCAPLV
                     PLRAMKGASDCHMCGRCSGHRNAISLEWRSPSAEVVQLGDKQANPWDTALILYGLLGI
                     AIGAFHWTVSTWFVDLKQIFASWLIDRNILWPLDTNAPWFLFTHYPEQNDVFSWLDGG
                     MVVGYIVVTGLVYGTVLLALLAAGTRMLGRFSFTRLHHLTQALIPVAGCGVFLGLSAT
                     TVSLLRAEHLPLWWVTDVRLGLLGVANLWSAWLAWRVIGRYAIDRFVTQSVAMVWFIA
                     ALAVVDSAWYLMFWGFSR"
     gene            complement(2444..3289)
                     /locus_tag="VKJ77_22660"
     CDS             complement(2444..3289)
                     /locus_tag="VKJ77_22660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HMC48136.1"
                     /translation="MGQVLFIVWRESVEALLVVGILYAWLKNGDADARRGIPYLWAGV
                     AAGLLAAVALGAALVGFTEELSGDAQDYFQTGMVLVACVLIVQMVLWMKQHGRSMKRD
                     MEASLQKSKQDANWLGVTLLVALAIAREGSETVIFLYGLGFGQSGHVDPMQYLAVAIG
                     LALAFLTFYLLQLGGKIFSWRLFFRVTEIMLLFLAAGLFETGVDKLIDKEILPVVMNQ
                     VWDTSWLLDDSSTFGSLVATLTGYRAHPAGMNLIAYVVYWAVIFLLLRRSKNRMAQKS
                     VRRVA"
     gene            complement(3378..3725)
                     /locus_tag="VKJ77_22665"
     CDS             complement(3378..3725)
                     /locus_tag="VKJ77_22665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006763873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HMC48137.1"
                     /translation="MQRKNKLVAASLALAAGWFASAAAAQAADLPTFKLEMNDGKLNP
                     TRIEVPAGQRIKIEVHNIGKGAAEFESIQLRKEKVLAPGADSFVVIAPLDKGEYKFFD
                     DFHQSAQGVIVAK"
     gene            complement(3812..>4158)
                     /locus_tag="VKJ77_22670"
     CDS             complement(3812..>4158)
                     /locus_tag="VKJ77_22670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004266710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HMC48138.1"
                     /translation="DIHAVKNNPNGFAEGDWMPYLQVTYELTKVGTTQTIKGDMMGMV
                     ASDGPHYGDNVKLFGPGKYHLKLNIAPPMQTGHMAFGRHVDKETGVGAWFKPYTIEYD
                     FPFAGIGKKGGY"
BASE COUNT          908 a         1375 c         1114 g          761 t
ORIGIN      
        1 tgcgctccaa cacgcttcgg ctacgtcgcc cggtcgaacg gtccgcggca gccaccatct
       61 cgcgtccccg gacagccgcc gtaacgacgg cgcgtcctac gccgtctagc agcgtgtcgg
      121 agagcggcga gcgctccgag cgttcactac gcagcgacac gttgctgcaa ggtcatagcc
      181 acatcagcat catgcataac ggtgaaacgt atcagttgcg cgccacgcgc ctgggcaagc
      241 tgatcctcac caagtaacga gcaggacgcg ctccaggaac acgcaggaca gaattgcagt
      301 accgggtatt gtggggacca cctcttcgag aggtgtttgg cactagccag caatgacggc
      361 ttgcacgcga gactttagac cccttcgtgc aaacaccagc cagtcgtcga tagccagcga
      421 agccgctttt tttggttccc atcgtgtgct ttgaacagcg ccatcagtta agcaaaaagc
      481 acgttttctc gcgaaaacgt gctttttctt taggccgact ggcttcgaac ggccttgcgc
      541 aaactgcttt cagacctaaa cgctctcgat ccccaacgcc gcgatgcccg ctcgcgccac
      601 cgccgcatcc tgatccgact tcacgcccga tacccccacc gcgccgacga tatccgcgcc
      661 aaccacgatc ggcacaccac cttcaagcat ggcagtcatc ggtgcactca agaacgccgt
      721 gcggccttgc ttgatcatgt cttcatacac tttcgtttcg cgccggccga gcgcggcggt
      781 gcgcgccttg cccgccgaca tctcggccgt gcttgcgcct gcgccctcca gcctgtgcag
      841 gtgaagcaga tggccgccgt catcgacgac agcaatcgcc acgcaccact tgttcgccaa
      901 tgcatgcgct tcagccgctg ccgcgatggt ttttacgtcc gcgtcggtca atacggattt
      961 tgttctcatt tcgtcacctg tggggatagt cgttgcgttg ataaagagat tagctcgcga
     1021 ttggctcgat acccgcaacg ttaccgcgaa aagccccaga acatcagata ccaggcgcta
     1081 tcgaccacgg cgagtgcggc gatgaaccat accatcgcca cactttgcgt cacaaaacgg
     1141 tcaatcgcat acctgccgat gacgcgccag gcgagccatg cgctccacag gttcgcgaca
     1201 ccgagcaaac ccaggcgcac atcagtcacc caccaaagcg gcaagtgctc agcgcgcagc
     1261 aacgacacgg tggtcgccga taaacccagg aacacgccac atcccgccac gggaatcagc
     1321 gcctgcgtca ggtgatgcag gcgcgtgaaa ctgaaacgcc cgagcatgcg cgtgccggcg
     1381 gccagcaagg ccagaagcac cgtgccgtac accagccccg tgaccacgat ataacccacg
     1441 accatcccgc cgtcgagcca ggagaagaca tcgttttgtt cgggataatg cgtgaagagg
     1501 aaccaaggcg cgtttgtatc gagcggccag aggatgttgc gatcgatcag ccacgacgca
     1561 aagatctgct tcaggtcgac gaaccatgtg ctcacggtcc agtggaacgc gccaatggca
     1621 atgccgagca agccgtacag aatgagcgcg gtgtcccacg gattagcttg tttatcgccg
     1681 agttgcacga cttcggccga gggcgaacgc cactcgagcg aaatagcgtt ccgatgaccg
     1741 ctgcaacggc cgcacatatg gcagtccgac gcacctttca tcgcgcgcag cggtacgagc
     1801 ggtgcgcagt tgacagggat cacgcgatgc ccgtgctcgc cctctttgta cgagcggcgc
     1861 catgcgtcct cgttgacctt gtagtgaaac ggcgcaagcc gcgccagcag cgaaaatacg
     1921 ccattcactg ggcagagata cttgcaccac acgcgtttct cgcgcccata cagcacgcca
     1981 acaatcatgg ccccgaccgt cgagccgccg agcaccagca acacggcttt cggatactga
     2041 taaacgctga ccatctggcc atagatggtg gtgatgccga atgcgacgaa cggccagccg
     2101 ccccagcgca accagcgtgg aatcgcccag ccgcggccga acttgctcgc aaattcggtc
     2161 aatgcgcctt cggggcacag cacgccgcac cacacgcggc cgagcatcac catggagagc
     2221 aggacgaaag gccaccagat accccagaac acaaactgcg cggccagcgt caggttgctc
     2281 cagagatgcg cagtaccatc cggcagcggc aggacggctg gaaccagaat cagaaacgca
     2341 tacacggcaa ccacgaccca ttgaatgccg cgaatcatgc tgccgtgttg ttgcatccat
     2401 tgcccggctt gctgtagccg gccgggccga ttcatcacat cgctcatgcc acccttcgca
     2461 ccgatttttg cgccatccgg tttttcgacc gacgcagcag caggaagatc acggcccagt
     2521 acaccacgta cgcaatcagg ttcatgccgg ccgggtgcgc gcgataaccc gtgagcgtgg
     2581 cgaccagcga accaaaagtg ctggagtcat cgagcagcca ggacgtgtcc cacacctgat
     2641 tcatgacgac gggcaagatc tccttgtcga tgagtttatc gacacccgtt tcaaacaagc
     2701 ccgctgcgag gaacaacagc atgatttccg tcacgcggaa aaagagcctc cacgagaaaa
     2761 tcttgccgcc aagctgcagc agatagaacg tcaggaacgc cagcgccaga ccaatcgcga
     2821 ccgccagata ctgcatggga tcgacgtgcc ccgattggcc gaagccgagg ccgtacagga
     2881 aaatcacggt ctcgctgcct tcacgcgcga tagcaagcgc gaccagcaag gtcacaccca
     2941 accagttcgc gtcctgcttg ctcttttgca gcgatgcttc catgtcgcgt ttcatcgacc
     3001 gcccgtgctg cttcatccac agcaccattt gcacgatcag tacgcacgcc accaggacca
     3061 tgcccgtctg gaaataatcc tgtgcatcac cggataactc ttccgtgaaa ccgaccagcg
     3121 ccgcacccag cgccactgcc gccagcaaac ccgccgccac acccgcccac aaatacggta
     3181 tgccgcgacg cgcgtcggca tcgccatttt tcagccatgc atacaggatg ccgacgacca
     3241 gcagcgcctc gacactctcc cgccacacga tgaaaagaac ctgacccatc acttatctcc
     3301 cgctcttgca ggccgaagca gtttgcgcgt gacgctgaat ggatagcgaa cagcgcgcga
     3361 accggcccgg cgtgaaccta cttcgcgacg atgacaccct gcgccgactg atgaaaatcg
     3421 tcgaagaact tgtattcgcc cttatccagc ggagcaatta cgacgaagga atcggccccc
     3481 ggcgccagca ccttttcctt gcgcaactgg atgctttcga actcagccgc acccttgcca
     3541 atgttgtgaa cttcgatctt gatacgctgc cccgccggca cttcaatacg cgtgggattc
     3601 agcttgccgt cgttcatttc cagcttgaag gtcggcaggt cggcggcttg cgccgcggcg
     3661 gcactggcga accatccagc cgccaaggct aacgaggcgg cgaccaactt gtttttgcgt
     3721 tgcatgcatg cttcctggct gcgacgcccg gcgagacgtt tgacttcatt tcacggtatt
     3781 tcacgtcgtg ccggacgcct gactcgaata ctcagtaccc gcccttcttg ccgatgccag
     3841 cgaacggaaa gtcgtattcg atcgtgtaag gcttgaacca cgcacccacg ccggtttcct
     3901 tgtcgacgtg acggccgaac gccatatggc cggtttgcat cggcggcgca atgttgagtt
     3961 tcaagtggta tttgcccggg ccaaacagct tcacgttgtc gccgtaatgc gggccgtcgc
     4021 tcgcgaccat gcccatcatg tcgcccttga tggtttgcgt cgtgccaacc ttggtcaact
     4081 cgtaagtcac ttgcaggtaa ggcatccagt cgccttccgc aaagccgttc ggattgttct
     4141 tcacggcgtg gatgtcgg
//
LOCUS       DATGBK010001614         1693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_342977, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001614 DATGBK010000000
VERSION     DATGBK010001614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342977"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..>1693)
                     /locus_tag="VKJ77_22675"
     CDS             complement(160..>1693)
                     /locus_tag="VKJ77_22675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HMC48139.1"
                     /translation="TLTEKLLLFSGAIQIAGTVKGRKSSRYATSDWMEIEKQRGISVA
                     SSVMQFEYGDCVINLLDTPGHEDFSEDTYRVLTAVDAAVMVIDGANGVEAQTLKLLEV
                     CRSRRTPILTFINKLDREVRQPLDLLDEIEQHLGVAAVPFTWPIGMGKEFQGVYDIAH
                     DQVRVFRAGQDTAGGAVETVRALDDADGERRFGPSWARAKEEIDLITGATPAFDRAAF
                     LAGEQSPVLFGSAINNFGVKEILDALVELAPPPSMRMSVQRPVLPEEPRFTGVVFKVQ
                     ANMDLAHRDRVAFIRVCSGHFERGMALKVTRTNKTFRANNVVTFLSQRRETVSEAFPG
                     DIIGIPNHGTLSLGDTLTEGELLQFVGLPFFAPEIFQTVEVVDPIRAKQLGEALRQLG
                     DEGAIQVFRPVLGGSTILGAVGQLQFEVVSHRLSAEYKVDVRIMPARYRMSRWVTCDD
                     AAELRRFTDAYSARIALDASNAPTYLASHVSEIDVAKKAWPKIVFNELREHSGAPFQK
                     SI"
BASE COUNT          365 a          546 c          456 g          326 t
ORIGIN      
        1 atgggcattc ccgtggaaat cgacagcgtg tttcagctca agcgataacc gcgacggatt
       61 atttcgttcg cacttttggg ttggggcatc gggcgtttct ggtcgagcta acaacatcaa
      121 cccaagcaac tacgcccact cccgcgccag cgaacctcat caaatagact tctgaaacgg
      181 cgctccggaa tgctcgcgca gttcattaaa cacgatcttc ggccaagcct tcttcgcgac
      241 atcgatttcc gatacatgcg atgcgagata cgtcggcgca tttgacgcat cgagtgcaat
      301 gcgggccgaa tacgcatcgg taaagcggcg caattcagcg gcatcgtcgc acgtaaccca
      361 ccgcgacatg cgataccgcg ccggcatgat ccgcacatcg accttgtatt ccgccgataa
      421 ccggtgcgac accacttcaa actgaagctg cccgacagcg cccagaatag tcgacccgcc
      481 aagcacagga cggaagacct gaatcgcgcc ttcgtcaccg agttgccgca gcgcttcacc
      541 aagctgcttt gcccggatcg gatcgaccac ttccaccgtc tggaaaattt ccggcgcaaa
      601 gaacggcaag ccgacgaact gcaacagctc gccttcggtc aatgtatcgc cgaggctcag
      661 cgtgccatga ttcggaatgc cgatgatatc gcccgggaac gcttcactca ccgtctcgcg
      721 gcgttgcgac aggaacgtca ccacgttatt cgcgcggaaa gtcttgttgg tacgcgtcac
      781 tttaagcgcc atgccgcgct cgaagtgtcc cgagcacacg cgaataaacg ccacgcggtc
      841 acggtgcgcc agatccatgt tcgcctgcac cttgaacacc acgccggtaa agcgcggctc
      901 ttccggcaac accggacgct gtaccgacat gcgcatggac ggcggcggcg cgagctcgac
      961 gagcgcgtcg agaatctcct tcacgccgaa gttgttgatc gccgatccaa acaacaccgg
     1021 tgactgttcg cctgcaagaa acgcagcgcg atcaaacgcg ggtgtagcgc ccgtaatcaa
     1081 gtcgatttct tctttcgcgc gcgcccagct cgggccgaaa cgacgctcgc cgtcggcatc
     1141 gtcaagcgca cgcacggttt cgacagcgcc accggcagta tcttgcccag cacggaatac
     1201 ccgcacctga tcgtgagcaa tgtcgtacac gccctggaat tccttgccca tgccaatagg
     1261 ccaggtgaac ggcacagccg ccacacccag gtgctgttca atttcatcga gcaggtcgag
     1321 cggttggcgc acttcgcgat cgagcttgtt gatgaacgtg aggataggcg tgcggcggct
     1381 gcggcagact tcgagcagct tgagcgtctg cgcttcaacg ccgttggcgc cgtcgatcac
     1441 catcacggcg gcatccaccg ccgtcagcac gcgatacgta tcttcggaga agtcttcgtg
     1501 tcccggcgtg tcgagcaggt tgatgacaca atcgccatat tcgaactgca tgaccgagct
     1561 cgcaaccgaa atgccgcgct gcttttcaat ttccatccag tccgacgtcg catagcggct
     1621 gctcttgcgc cccttcacgg tgcctgcaat ctggatcgcg cccgaaaaca gcaacagctt
     1681 ttcggtcagc gtg
//
LOCUS       DATGBK010001615         1525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_42668, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001615 DATGBK010000000
VERSION     DATGBK010001615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42668"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VKJ77_22680"
     CDS             complement(<1..193)
                     /locus_tag="VKJ77_22680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006755271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent phenylacetaldehyde dehydrogenase"
                     /protein_id="HMC48140.1"
                     /translation="MSSDNTVVVSDAVKAFVRRDFGLFINGGPQPAHSPRRLDVFNPA
                     TGEPFASVPDADAIDVDNAV"
     gene            complement(362..814)
                     /locus_tag="VKJ77_22685"
     CDS             complement(362..814)
                     /locus_tag="VKJ77_22685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48141.1"
                     /translation="MMNASGMDCAGTEFTDDAGLPMLLYAVAALRVEPAGVDGWFRRR
                     PGALPAVISREEDVSDILLRLPDCWNIVDGARCVGLHDEIDILTGDPRFNRGVDEANC
                     AIVGHADGTSFALLLQINAAEAVLIPERPFRERGTFEGCLSLDDRAES"
     gene            complement(837..>1525)
                     /locus_tag="VKJ77_22690"
     CDS             complement(837..>1525)
                     /locus_tag="VKJ77_22690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004537354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HMC48142.1"
                     /translation="DDPVSSSAFGTALDAAVAALAGLVRPSATVFYSVGTDNEPSGFE
                     LFGLAETMHRTYMQRYCTLDPLHPSYCARQTLSVLTLTSALPEPARDRSIYWKRFLEP
                     HRVVDVMEVLLRDGARTVAAFSLLRMAPAEAFSADELSRAHAVQPLLEAALVPLLHRE
                     HPIRTHAGGAPLTHREQQIARRVRNGMSNKQIASDLALAQPTVKTHLLHMFRKLGVSS
                     RTELIGVLFL"
BASE COUNT          318 a          467 c          478 g          262 t
ORIGIN      
        1 tgacggcgtt gtcgacgtca atagcgtcgg catccggaac actggcaaac ggctcgccgg
       61 tcgcaggatt gaagacgtcg agccgccgag gcgaatgtgc gggctgtggg ccaccgttga
      121 taaacaggcc aaagtcgcgc cggacgaatg cctttaccgc atcgcttacg acgactgtat
      181 tgtcgctact catagcttcg atctctcgta gttgatcaga ggagtcaggt gccgctggat
      241 attgcggaca atcaggatgg gacgaatgta gccatgccga tctgcctgtc gtgagcgcaa
      301 atcggcaggc agccggcagt taagggaaaa catctagaag cagtacgagg tcgcttgcgg
      361 gtcaggactc ggcccggtca tcaagcgaga ggcagccttc gaaggtgccg cgctcccgga
      421 acggacgctc agggatcaac accgcctcag cggcgttaat ctgcaacagt agtgcgaagc
      481 ttgtgccatc ggcatggccg acgatcgcgc aatttgcctc gtcgacgccg cgattaaagc
      541 gcgggtcgcc ggtcagaatg tcgatctcgt catgcagacc cacgcagcgt gcgccgtcca
      601 cgatgttcca gcaatccggc aggcgcagca gaatgtccga gacatcctct tcgcgagaga
      661 ttaccgctgg aagtgcgccc ggacgacgcc tgaaccagcc gtccacgccg gccggctcga
      721 ctcgcaacgc ggcgaccgcg tagagcaaca tcggcaaccc ggcatcatcg gtgaattccg
      781 tgccggcgca gtccatgccc gaggcgttca tcatgggtgt gtaggctcca tctccatcac
      841 aggaacagca ccccgatcag ttcagtccgg ctcgacacac cgagcttgcg gaacatatgc
      901 agcagatgag ttttgaccgt cggctgcgcg agagcgagat cgctggcaat ctgcttgttc
      961 gacatcccgt tgcggacgcg ccgcgcaatc tgctgttcgc gatgcgtcaa gggagcgccg
     1021 ccggcgtgcg tacgtattgg atgttcgcga tgcaacagcg gcaccagcgc cgcttcgagc
     1081 agtggctgta ccgcgtgcgc gcggcttaac tcatcggcgc tgaacgcttc agcgggcgcc
     1141 atgcgcaaaa gcgaaaacgc tgcgaccgtg cgtgcgccgt cgcgcagcaa cacctccatc
     1201 acgtcgacca ctcggtgcgg ctcgaggaaa cgcttccagt aaatggaccg gtcacgcgcg
     1261 ggctccggca gtgcgctggt cagggtcaac acgctgagag tctggcgcgc acagtacgac
     1321 ggatgcaacg gatcgagcgt gcaatagcgc tgcatgtaag tgcgatgcat ggtttcggcg
     1381 agaccgaaca gctcgaagcc cgagggttcg ttgtccgtcc ctaccgaata gaaaaccgtg
     1441 gccgaaggcc gaaccagccc cgccaacgcc gcgaccgctg catcgagcgc ggtaccgaat
     1501 gcgctcgaag agacgggatc gtctc
//
LOCUS       DATGBK010001616         2025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_227775, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001616 DATGBK010000000
VERSION     DATGBK010001616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227775"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..482)
                     /locus_tag="VKJ77_22695"
     CDS             complement(99..482)
                     /locus_tag="VKJ77_22695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48143.1"
                     /translation="METTLSRPVWLFIDSMVIEGLLIRTCMGFEQIARLRTSFAAIRF
                     NKITVKNMMQHVSFRTGISTSDEESFRYLGQGVEGDAERTLIEQKGGLISGSAPLPPR
                     ASSQRRSTAAENYAGRLRGVSARGC"
     gene            481..1236
                     /locus_tag="VKJ77_22700"
     CDS             481..1236
                     /locus_tag="VKJ77_22700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019656079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HMC48144.1"
                     /translation="MSDAERQTREDLAACYRLVAYFGMDDSIYTHISARVPGEHNAFL
                     INPYGVLFNEITASSLVKVGFDGLPLSPTEHDVNPAGFTIHSAIHLACPDAACVLHTH
                     TVAGVAVASLNAGLQPVNQWALQFHNRVAYHEYEGIALDLDERERLVADLGDHKVMIL
                     RNHGLLTTGATIAEAFILMMNLDRACRVQVAIQSTGQPVRAVSEAVCEKTARQYSSGD
                     SNRLSGAADPNAREWRALLRRLAPPSSARSYRD"
     gene            1290..>2025
                     /locus_tag="VKJ77_22705"
     CDS             1290..>2025
                     /locus_tag="VKJ77_22705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48145.1"
                     /translation="MNRRDFLLASAATATWLGPGMQVSSWAAAASNGTLNIAVQPEPP
                     GLMIGLVQNAPTQLISGNIYEGLLRYDEKLQPLPNLATSWTVSPDSTVYTFTLKKGVL
                     WHDGKPFTANDVVFSVDKFLRKTHARLRASLQYVSSIKALDDHTVEFRLPKPFGPFMN
                     LFEVGTMPMIPQHIYDGTDYANNPANNTPIGTGPYQFTKWQRGSFIQLERFAQYHEPG
                     LASVENVYFHVIPDAASRSAAFESGKI"
BASE COUNT          411 a          635 c          560 g          419 t
ORIGIN      
        1 gatgagcttg gcaaataggc tcggcagata agccagcgcg aacccggtgc gtgtttttca
       61 aacgtccggg ttcgcgttgc ttggcgactc actgttcttc aacaaccgcg cgctgagacg
      121 ccgcgtagcc gtccagcgta attttcggca gctgttgatc gcctttgcga agaagccctt
      181 ggcggtagcg gcgctgagcc tgaaatcaac cctcctttct gctcgatcaa cgtgcgctca
      241 gcatctcctt ccactccctg acccagatac ctgaatgact cctcgtcgga agtagagatt
      301 ccggtccgga aagaaacatg ttgcatcata ttttttaccg tgatcttatt gaaccggatc
      361 gcggcaaacg atgtgcgcag cctggcgatc tgttcgaagc ccatacaggt gcggatcagg
      421 agcccttcga tgaccatgga gtcgatgaaa agccaaaccg gccgcgaaag cgtggtctcc
      481 atgagcgacg ccgaacgcca gactcgtgag gacctcgcgg cgtgttaccg gctggttgcg
      541 tatttcggca tggacgacag catctatacg catatttcgg cgcgtgttcc cggcgagcac
      601 aacgcatttc tgatcaaccc gtacggcgtg ttgttcaacg aaatcaccgc atcgtcgctg
      661 gtgaaagtcg gtttcgacgg cctgccgctc agtcctaccg agcacgacgt caacccagcc
      721 ggtttcacca tccacagcgc gattcatctg gcgtgcccgg atgccgcgtg cgtgctgcac
      781 acccatacgg tagccggtgt tgcagtcgcc tccctcaatg ccggcctgca accggtcaat
      841 caatgggcgc tgcaattcca caatcgcgtg gcctatcacg agtacgaggg catcgcgctc
      901 gatctcgatg aacgcgagcg tctggtcgcc gacctgggcg accacaaggt gatgatcctg
      961 cgcaaccacg gcttgctgac aacgggtgcg acgatcgccg aggcgtttat cctgatgatg
     1021 aatctcgatc gcgcgtgccg tgtccaggtc gccattcagt cgaccggaca accggtgcgt
     1081 gcggtaagcg aagccgtctg tgaaaaaacc gcgcggcaat attcgagcgg cgattcgaac
     1141 cgcttgtccg gcgccgccga tccgaatgcg cgtgagtggc gcgcactgct gcggcgcctg
     1201 gcacctccct catctgcgcg gtcttatcgg gattaactcc cggatccgta cggtactgct
     1261 tcgaacgcat cttctacacg cctatagcca tgaatcgacg cgactttcta ttagccagcg
     1321 ctgccaccgc cacttggttg ggaccaggaa tgcaggtctc gtcgtgggct gctgcagcct
     1381 ccaatggcac gctgaacatc gctgtgcagc ctgagccgcc ggggctgatg atcggtctgg
     1441 tccagaatgc accgacgcaa ctgatttcag gcaacatcta cgaaggcttg ttgcgctacg
     1501 acgaaaaact ccagccgttg cccaatctcg ccacgtcgtg gaccgtcagc ccggattcaa
     1561 ccgtgtacac gttcaccctg aagaagggcg tgttgtggca tgacggcaag ccgttcacgg
     1621 cgaacgacgt cgtcttcagc gtcgacaaat tcttgcgcaa gacgcatgcg cgactgcgtg
     1681 catcgctgca atacgtttcc agcatcaagg cgctcgacga ccacaccgtc gagttccgct
     1741 tgccgaagcc gttcggccca ttcatgaacc tgttcgaagt cggcaccatg ccgatgatcc
     1801 cgcagcacat ctacgacggc accgactacg ccaataatcc cgccaacaac acgccgattg
     1861 gaaccggtcc ctatcagttc acgaagtggc agcgagggtc gttcatccag ctcgaacgct
     1921 tcgcgcagta tcacgaaccg gggcttgcct ccgtcgaaaa cgtctatttt catgtgattc
     1981 cggacgccgc gtcgcgttcc gccgccttcg agtccggcaa gatcg
//
LOCUS       DATGBK010001617         1814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_42689, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001617 DATGBK010000000
VERSION     DATGBK010001617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42689"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /locus_tag="VKJ77_22710"
     CDS             <1..596
                     /locus_tag="VKJ77_22710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC48146.1"
                     /translation="GIWLVADEVYERLYYGDDVAVAPSFLDLATRDERVIAVNSFSKA
                     WLMTGWRLGWIVAPERLMEDLGKLVEYNTSCAPSFVQMAGIAAVKDGEQFTQALVADL
                     RTSRDYLVTALQRIPGIDVRAPAGSMYLFFRLPGANRSLELCKALVRESALGLAPGSA
                     FGPEGEGFVRWCYACDTTRLDAGVARLRAFMEAHPAA"
     gene            1020..>1814
                     /gene="scpB"
                     /locus_tag="VKJ77_22715"
     CDS             1020..>1814
                     /gene="scpB"
                     /locus_tag="VKJ77_22715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011851532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HMC48147.1"
                     /translation="MNTQEAKIVLETALICAQEPLKLAELRKLFADDISADTVRTLLD
                     ALKQDWSGRGVELVALASGWRFQSKPAMRAYLDRLHPEKPPKYSRAVLETLAIIGYRQ
                     PVTRGDIEEIRGVTVNTQVVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLSA
                     LDELPALDNPSAQLEASLLAQHAIHFPGDDAAAIGAALVQGLESKGEPALLPDAAGAA
                     THEATQSLHSQEPAADETVHPEGEPFLHSPVVADEPVNEENADAQTN"
BASE COUNT          328 a          536 c          600 g          350 t
ORIGIN      
        1 tgggcatctg gcttgtcgcc gacgaagtct acgagcgcct ctattacggc gatgacgtag
       61 cggtcgcccc ttcgttcctc gatctggcta cgcgtgacga acgggtaata gcggtgaatt
      121 cgttctcgaa ggcctggctg atgacgggct ggcggctcgg ctggatcgtg gcgcctgagc
      181 gcctgatgga ggatctcggc aagctggtcg agtacaacac ctcgtgcgcg ccgtcgttcg
      241 tccagatggc cgggatcgct gcggtgaagg acggcgagca atttacgcaa gcgctggtcg
      301 ccgacctgcg caccagccgc gattacctcg taacggcatt gcagcggatt ccgggtatcg
      361 atgtgcgggc gccagccggt tccatgtacc tgtttttcag gctgccgggc gcgaaccgca
      421 gccttgagtt gtgcaaggcg ctcgtgcgcg agagcgcgct aggacttgcg cccggcagcg
      481 cgttcggtcc cgaaggagag gggtttgtac gctggtgcta cgcctgcgac accacccgcc
      541 tggacgccgg ggtcgcgcgt ttgcgagcgt tcatggaggc gcacccggcc gcgtgagcgg
      601 cgagggggcg gttggcgagg agcgagggcg cggggtaaac cagggacagg ggccaaagtt
      661 tcggctccag gcggccgccg gaaggccgcc agacgtgagt ctggcggcga cccaatgttt
      721 cacctttacg caccgtttgt ttttgcgtaa tatgcgtcca gtcacgtgct tccgccttgg
      781 aaagcgctac ttcgtccggc tgggaaaagc tcggcgatca ggttctgatc ccgtgttttg
      841 cctccccccg gtgcgtgctc ccaatcaata tgaccgatca gaaatcgggc gagcgcgtcg
      901 tcagtatcct cgtccacggt tttccagtct gagcgttgcg aatggttcga gtagtcggcg
      961 tcattcgatt cggcctgact tgaccggttc atagaccata cagggtccta tctagctgca
     1021 tgaataccca agaggcgaag atcgtcctcg agactgcctt gatctgcgcg caggagccgc
     1081 tgaaactcgc cgagttgcgc aagcttttcg ccgacgatat ctcggcagac acggttcgca
     1141 ccttgctcga cgccctgaag caggattggt cgggacgcgg cgtggaactc gtggcgctgg
     1201 cgtcgggatg gcggtttcag agcaaacctg caatgcgggc ctatctcgat cgactacacc
     1261 cggaaaagcc gcccaaatac tcgcgagccg ttctcgaaac gctcgcgatc attggttacc
     1321 ggcagcctgt gacgcgtggc gacatcgaag aaattcgcgg cgtcacggtg aacacgcagg
     1381 tggtgaaaca actggaagat cgcggctgga tcgaggtgat cggtcatcgc gacgtgccgg
     1441 gccggccagc gctctatgcc accaccaagc agttcctgga tgacctcggc ttgagcgcgc
     1501 tggacgaact gcccgcactc gacaacccgt cggcgcagct ggaagcgtcg ttgctcgcgc
     1561 agcatgcgat ccatttcccc ggcgatgacg ccgcggcaat tggcgctgcg ctggtgcaag
     1621 ggctggaatc gaagggcgaa cccgctttgt tgccggatgc agcgggcgcg gccacgcatg
     1681 aggcgactca gtcgctgcat tcgcaggaac ccgcggcgga cgaaacagtc catccggaag
     1741 gtgaaccgtt tttgcattcg ccggttgtcg ctgacgagcc cgtgaatgag gagaacgccg
     1801 atgcgcaaac gaac
//
LOCUS       DATGBK010001618         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_134564, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001618 DATGBK010000000
VERSION     DATGBK010001618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134564"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..1172
                     /locus_tag="VKJ77_22720"
     CDS             159..1172
                     /locus_tag="VKJ77_22720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012353973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HMC48148.1"
                     /translation="MSEIKPHALIELRGVSQRFGERDENAATRWLRERNVLAAQAVTR
                     AVEHVDLAITPGEVVGLVGESGCGKSTLGRIVSGLISPTEGDVLVDGQDRAAMSPAAL
                     RAARLAIQMIFQDPYSSLNPRRRIRDIVGEAPLIHGMVERADLDDYVAAQLKRAGLDP
                     SLADRYPHEFSGGQRQRIGIARALAVNPSMLVCDEAVAALDVSIQAQILNLFMDLREQ
                     LNLTYLFISHDLGVVEQLSDRVVIMYLGRVVESAPVEEIFRHPNHPYTQTLLAEIPRI
                     DTRKKHFTAIRGEMPSPLAPPSGCHFHPRCPHAMPRCKTEVPRLRGIAIEHVSACHLN
                     DAH"
     gene            1227..>2032
                     /locus_tag="VKJ77_22725"
     CDS             1227..>2032
                     /locus_tag="VKJ77_22725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004634329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48149.1"
                     /translation="MKRLVLSTLTATLASAALFSSGASAQTLNIAFADPLSSLDPQLN
                     NYAGDRSVDLHFWDLLVENHNNVLAPGLATSWKSTGNDTWEFKLRHDVKWQDGTPFTA
                     DDVIYSYQRARNVPGTIATFAGYLRTIASVTAPDPYTLVIKTSSPTPDLPLNLTSVHI
                     VSKHIGEKATTEDYNSGRAMVGSGPYKFVSYTPGDRVVMTRNDAYWGAKPIWDKVNYR
                     YVSNAAARTAALLSGDVDMIDKVSVSDLPRLKQSPKVSVFAYPGLRVLIL"
BASE COUNT          394 a          649 c          605 g          384 t
ORIGIN      
        1 tgtgcgttcg ctgcgcgctg cacgcgggcc acgtcggtct gctcgacgcc cccggcgctt
       61 ggaccctcac ccgccgcgca agcgtctgag cacggcacgc atctagtacg ctgttttcat
      121 cccggccggc aagccaatgt ccgcacggag acaaccgcat gagcgagatc aaaccacacg
      181 cgctcattga actgcgcggg gtcagccagc gcttcggcga acgcgacgag aacgccgcga
      241 cacgctggtt acgcgagcgc aacgtgcttg ccgcgcaagc ggtgacgcga gcagtcgaac
      301 atgtcgatct cgcgatcacg ccgggcgaag tggtcgggct ggtcggcgaa tccggctgcg
      361 gaaagtcgac gctcgggcgc attgtttcgg ggctcatctc gccgaccgaa ggcgacgtgc
      421 tggtcgatgg acaggaccgc gcagccatgt caccggcggc gctgcgcgcc gcgcggctgg
      481 cgatccagat gatcttccag gacccgtatt cgagtctgaa tccgcgacgg cgcattcgcg
      541 atatcgtcgg ggaggcgccg ctcattcacg gcatggtcga acgcgccgat ctcgacgact
      601 acgtggcagc gcagttaaaa cgcgcgggcc tcgatccgtc gctcgccgac cgttatccgc
      661 atgagttcag cggcggtcag cggcagcgca tcgggattgc gagagcgctc gcggtcaacc
      721 cctccatgct cgtctgcgat gaagcggtcg ccgccctgga tgtatcaatt caggcgcaga
      781 tcctgaatct cttcatggat ctgcgagagc agctcaatct cacgtacctg ttcatcagcc
      841 acgacctggg cgtggtcgag caattgtcgg atcgcgtggt gatcatgtat ctcgggcggg
      901 tggtggaaag cgcccccgtt gaggagatct tccggcatcc gaatcatccg tatacgcaga
      961 ccctgctggc cgaaattccc cgtatagata cgcgcaagaa gcacttcacc gccattcgcg
     1021 gcgagatgcc gagtccgctt gcgccgccgt cgggttgcca ttttcatccg cgctgcccgc
     1081 acgccatgcc gcgttgcaag acggaagtgc cgcgcttgcg tgggatcgcc atcgaacatg
     1141 tcagcgcgtg tcatctgaac gacgctcact agaagacact ccctaagttt caatccagaa
     1201 cacactaaat aaaaaggaat tgcatcgtga aacgcctggt cctttccacg ctgaccgcca
     1261 cgctcgccag cgcggcgttg ttcagttccg gcgcatcagc gcagacgctc aacattgcgt
     1321 tcgccgatcc gctctcgtcg ctcgatccgc aactgaacaa ctacgcgggc gaccgttccg
     1381 tcgacctgca cttctgggat ctgctggtcg agaatcacaa caacgtcctt gcgcccggcc
     1441 tcgcgacaag ctggaagtcg accggcaacg acacgtggga attcaagctg cgccatgacg
     1501 tcaagtggca ggacggaacg ccgttcaccg cggacgacgt gatctattcg tatcagcgtg
     1561 cccgcaatgt tcccggaacg atcgccacct tcgcggggta tctgcggact atcgcgtctg
     1621 tcactgcgcc tgatccgtac acactggtca tcaagaccag ttcacctacg ccggacctgc
     1681 cgctcaacct gacgtccgtt catattgtca gcaaacatat aggcgagaag gcgacgacgg
     1741 aagactacaa ctccggtcgc gcgatggtcg gctcggggcc atacaagttc gtttcgtaca
     1801 cgccgggcga ccgcgtggtg atgacgcgta acgatgcgta ctggggcgcc aagccgatct
     1861 gggacaaggt gaactatcgc tacgtgagta acgcggccgc tcgcacggcg gcgttgttgt
     1921 cgggcgacgt agatatgatc gacaaggtct ccgtttccga cctgccacgt ctcaagcagt
     1981 cgccaaaggt atccgtattc gcctatccgg gcctgcgtgt gttgatactt ca
//
LOCUS       DATGBK010001619         1866 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_134567, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001619 DATGBK010000000
VERSION     DATGBK010001619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134567"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..886
                     /locus_tag="VKJ77_22730"
     CDS             <1..886
                     /locus_tag="VKJ77_22730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HMC48150.1"
                     /translation="IIIGRPAVVEMRLQKMGSKLKPGTDFEIVNPEDDPRYQKCWQEY
                     HNIAAREGVTPDNAKAALRKFNTLIGAILVRLGDADGMICGMIDTYHDHLKFIEQVLG
                     KAEGVENFAAMNLLMLQGRNLFISDTYVNEIPTPTQLADMTILAAREIEKFGIAPKVA
                     LLSNSNFGSVPTASSKRMAEARKLIAERAPDLEVDGEMHGDAALSEVVRKAAFPASKL
                     TGEANLLIMPNVEAANITYNLLKMVSGEGVTVGPFLLGADKPVHILTPAATVRRIINM
                     TAVASANARVGKAVSNEA"
     gene            1111..>1866
                     /locus_tag="VKJ77_22735"
     CDS             1111..>1866
                     /locus_tag="VKJ77_22735"
                     /inference="COORDINATES: protein motif:HMM:NF024418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ESPR-type extended signal peptide-containing
                     protein"
                     /protein_id="HMC48151.1"
                     /translation="MLSRVADRFIYLFVKTSRFEDLFRVRHISHNYLQVFSMNKVFKS
                     VWSEALGAWVAASELCRGRGKGGGKVARAVMLAVGLGAAGAAFAGGNGTSYTGNGAAT
                     ATNPTDIAIGSGASATSKTKDAIAIGDAAASTADGAISIGGSVSNAATNSILMGNAGV
                     PAGTTGQVAVASIDAGSTASVFFAPAGGSVQTSANSFSFNPYAGIKTSASPDSVNISG
                     TVSAAPSSVAIGSKSSVTNTQAAATAGVAIGSNA"
BASE COUNT          400 a          469 c          599 g          398 t
ORIGIN      
        1 gatcatcatc gggcggccgg cggtggtgga aatgcgtctg cagaagatgg gctcgaagct
       61 caagcccggc accgatttcg agatagtgaa tccggaagac gatccgcgtt accagaagtg
      121 ttggcaggag tatcacaaca tcgctgcacg cgagggcgtg acgccggaca acgccaaggc
      181 cgcgctgcgc aagttcaata cgttgattgg cgcaatcctg gttcgtctcg gcgatgccga
      241 cggcatgatc tgcggcatga tcgacacgta tcacgaccat ctcaaattca tcgagcaggt
      301 gttggggaaa gcggaaggcg tggagaactt tgccgcgatg aacctgctga tgctgcaggg
      361 acgcaatctc ttcatcagcg atacctacgt caacgagatc ccaacgccca cgcaactcgc
      421 cgatatgacc attttggcgg cgcgcgaaat cgagaagttc gggattgcgc cgaaggtcgc
      481 gttgttgtcg aactcgaact tcggcagcgt gccgacggct tcatcgaagc gcatggccga
      541 ggctcgcaag ctgatcgctg agcgcgcgcc ggatctggaa gtggacggtg aaatgcacgg
      601 cgatgcagcg ttgtcggaag tggtgcgcaa ggccgcgttt ccggcgtcaa agctgactgg
      661 tgaagcgaat ctgctgatca tgccgaacgt ggaagccgcg aacatcacgt acaacctgct
      721 caagatggtg agcggtgaag gcgtgacggt tgggccgttc ttgcttggtg ccgataagcc
      781 ggtgcatatt cttacgccgg ccgcgaccgt gcggcggatc atcaatatga cggcggtagc
      841 gtcggcgaac gcgcgagttg gaaaggcggt gagcaacgag gcgtaagccg gtgagtttgt
      901 ccgtcatcct gaccattgga tgacggtcga cttaggcgtg gacgaagcgg cgaccgagcg
      961 tatcggtcgc cgtttttttt gcgcttgtcg tcgcgacatc tagcgcaaat acgctaacga
     1021 cgcccaatga attattaaag agatagaaag ggtgtggtgc atacaacaac gcctttctta
     1081 ttcggataaa tctgattcga atgccaagtt gtgctgagta gagtcgcgga tcgtttcatt
     1141 tacctgttcg tcaagacaag tcgtttcgaa gatttgtttc gcgtcagaca tatttcgcac
     1201 aactatttgc aggtattcag catgaacaag gtctttaaat cagtttggag cgaagctctc
     1261 ggtgcttggg tcgcggcgtc ggaattgtgt cgggggcgcg gaaagggcgg ggggaaggtg
     1321 gcgcgggcgg tgatgttggc ggttggattg ggtgctgcgg gtgcggcgtt tgctggtggg
     1381 aacggaacgt cttataccgg caacggcgca gctactgcaa cgaatccaac tgacatcgcg
     1441 atcggttcag gcgcttcggc aacgagcaag accaaggatg cgattgctat cggcgacgct
     1501 gcagcgagca cggcggatgg tgcgatcagc attggcggaa gtgtttcgaa tgctgcgact
     1561 aactctattt tgatgggcaa cgcaggagtc ccggccggaa caaccggcca ggtggcagtt
     1621 gcttctattg acgctggttc gaccgcgtcg gtatttttcg caccggctgg cggatcggtt
     1681 cagacttcgg cgaactcgtt ttctttcaat ccatatgccg gaatcaaaac atcggcatcg
     1741 cccgattctg tgaatatctc ggggacggtg agcgccgcgc catcgtctgt cgccatcggt
     1801 agcaaatcca gcgtcaccaa cactcaggcc gcggccacag cgggtgtcgc gatcggatcg
     1861 aatgcg
//
LOCUS       DATGBK010001620         1580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_42707, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001620 DATGBK010000000
VERSION     DATGBK010001620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42707"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..728)
                     /locus_tag="VKJ77_22740"
     CDS             complement(<1..728)
                     /locus_tag="VKJ77_22740"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003960 - NADPH:quinone reductase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase family protein"
                     /protein_id="HMC48152.1"
                     /translation="MRAIRCNQYGPPESLVLETLPDLQPGPGQVVIDVRAASVNFPDV
                     LVIQNKYQMKPELPFTPGSEFAGVVRAVGPDVKRLKPGMRVAAYTAQGAFAEQARASE
                     AACMPLPDDIDFASAAAITLAYGTSHHAVVDRGALKAGETMLVLGAAGGVGLAAVEIG
                     KALGARVIAAASSPEKLALCVEHGADATIDYTSENLRERIKALTDGNGPDVIYDPVGG
                     EYAEPAFRSIGWRGRYLVVGFANG"
     gene            925..>1580
                     /gene="surE"
                     /locus_tag="VKJ77_22745"
     CDS             925..>1580
                     /gene="surE"
                     /locus_tag="VKJ77_22745"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HMC48153.1"
                     /translation="MRILLSNDDGYLARGLNVLHAAMQPLGEVTVMAPEQNCSGASNS
                     LTLSRPLTIHTAPNGFNYVNGTPTDSVHIALTGMLAEQPDLVVSGINNGLNMGEDTLY
                     SGTVAAATEGFMFGVPAIAFSLVGRDWLHLEDAARVAAEIVAHYLAHPMPGHPLLNVN
                     IPSLPYDEMGEWRITRLGKRHPSQPVVRQIDPRGNPIWWIGPSGDALDASEGTDFHAV
                     A"
BASE COUNT          272 a          508 c          495 g          305 t
ORIGIN      
        1 tcaccgttcg caaacccgac cacgagatac cggccgcgcc acccgatact gcgaaaagcc
       61 ggctcagcgt actcaccgcc gaccgggtcg tagatgacgt cgggcccgtt cccgtctgtc
      121 agcgccttga tccgttcgcg caggttttcg ctcgtgtagt cgatggtggc gtccgcgccg
      181 tgttccacgc acaacgcgag cttttccgga cttgacgccg ctgcaattac gcgagcaccg
      241 agcgccttgc caatttccac cgccgccagc ccgacgccgc ccgccgcgcc cagcacgagc
      301 atggtttcac cagcctttag tgcgccccgg tccaccacgg catggtgcga ggtgccatac
      361 gcaagcgtaa tggccgcagc gctggcgaag tcgatatcgt cgggcaatgg catacatgcc
      421 gcttcgcttg cccgcgcctg ctcggcgaag gcgccttgcg ccgtgtaggc ggcgacccgc
      481 atgccgggct tcaaccgttt gacatcaggg cctacggccc gcaccacacc cgcgaattcg
      541 gaaccgggag tgaacggtag ttcgggcttc atctggtact tgttctggat cacgaggacg
      601 tcagggaagt tcacgctggc ggcgcgtacg tcgatcacta cctggcccgg cccgggctgg
      661 agatcgggga gtgtttccag gacgagggac tccggtggtc cgtactggtt gcatcgaatg
      721 gcgcgcatgg tgtctccggg tgaaattatc gtgatctggc agtgtagatc agggccgcat
      781 gagcgtgctc ctgcccctgt cgcgttggcc gaaaggtcta taaatcgcat gcaacttgcc
      841 cactgtaaag cgctgtggca gaccgtttgg ccgagtgtcc cgccgccgat ccgcgggcct
      901 tccttcctcg gttacaatcg tcggatgcga atcctactca gcaacgacga cggttatctg
      961 gcccgcggcc ttaacgtgct gcacgcggcc atgcagccgc ttggcgaagt cactgtgatg
     1021 gcgcccgagc aaaactgcag cggcgcttcg aattcactga cgctgtcgcg acctctcact
     1081 attcacactg cgccgaatgg gttcaactac gtgaacggca cgccaacgga ttcggtgcac
     1141 atcgcgctga cgggcatgct ggccgagcag ccggatctgg ttgtatcagg gatcaacaac
     1201 ggtctgaaca tgggcgagga cacgctgtat tccggcacgg ttgccgcggc caccgaaggg
     1261 ttcatgttcg gcgtgccggc cattgccttc tcgctggtcg ggcgcgactg gctgcatctg
     1321 gaggacgcgg cgcgcgtagc ggctgagatt gtcgcgcact atctcgcgca ccccatgccc
     1381 ggtcatccgc tgctcaacgt gaacattccg agtctgccgt atgacgagat gggcgagtgg
     1441 cgcattacgc ggctgggcaa gcgccatcca tcgcagccgg tcgttcggca aatcgatccg
     1501 cgcggtaatc cgatctggtg gatcgggccg tccggtgacg cgctcgatgc aagcgaaggc
     1561 acggacttcc atgcggtggc
//
LOCUS       DATGBK010001621         3792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_296839, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001621 DATGBK010000000
VERSION     DATGBK010001621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296839"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1019)
                     /gene="dhaK"
                     /locus_tag="VKJ77_22750"
     CDS             complement(<1..1019)
                     /gene="dhaK"
                     /locus_tag="VKJ77_22750"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004371 - glycerone kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HMC48154.1"
                     /translation="MKKLINDVSAVVPDMLDGLAALNPGLSLLQGSTIIVRADAEAAA
                     ARGEVALISGGGSGHEPAHGGYVGPGMLSAAVAGEVFTSPSTDAVLDAIRAVAGSAGV
                     LLIVKNYTGDRFNFGLAAEIARAEGIAVEMVIVADDVALSAHGEHAGRRGLAGTVFVH
                     KIAGAAAAEGRPLGEVAQIARDTAASLGTMGVALTPCTVPAAGKPGFQLADDEIEWGL
                     GIHGEPGVERGALEPAGKIVGRLLAKIIDDLALKPDDRVALLVNNLGGTPSSELSIVA
                     GSALSYLREHRIQVERAWSGTFLSALEMAGISLTLLRVDEHRLAWLDAAAQTTAWPAL
                     SGRVA"
     gene            complement(1159..2052)
                     /locus_tag="VKJ77_22755"
     CDS             complement(1159..2052)
                     /locus_tag="VKJ77_22755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006028391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator ArgP"
                     /protein_id="HMC48155.1"
                     /translation="MLDYALLDALGAVVRLGSFDRAARELNVTPSAVSQRVKLLEERV
                     GSVLVKRGQPCIATPPGALLCRHIERVQRLETELGGQMPTLPGMLAGKWPTFRMAVND
                     DSVGTWFIDAISGFCAEREMLLDLVIEDQEYTAQQLRDGSVQGAVTTQAEPVQGCRST
                     KLGRMRYLPVCSPAYFDRHFGAGVTRDALRHAPRVDFSPKDQMQKRFMRRITRADLDP
                     PRHLIPHVAGYLRACLSGMAWGMCPTQMIGPALASGELVEMVPGAHIDVDLYWQSWRL
                     SIGWLDDFRAMLQQRATEFLD"
     gene            2229..3347
                     /locus_tag="VKJ77_22760"
     CDS             2229..3347
                     /locus_tag="VKJ77_22760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006757783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC48156.1"
                     /translation="MTPSPFQLERYFAVHEFTARYLLCSSDPESMSITDLLAFEPGSM
                     EGLGSLRLGYTEYPGAPELRRELATLYESIDIDNLIVHTGAQEAIFSFVHSMLKAGDH
                     MIVHMPGYQSHYSIAEAAGVAVSPWLARESENWALDPDELEKLVRPETKALLICAPHN
                     PTGYLPERERFEAIVDFCRRRGLWLFSDEVYRGLEHDPATRLPAACDLYEKAISLGAL
                     SKSHGLAGLRIGWVASRDRDVLAAMSTFKDYLTICNSAPSEYLAAIAVRNTSALIERN
                     TSIVRNNLAILDPFFERHQEILAWRRPAAGTVAFPRLKHGGAERFCAEVLERTGVLLL
                     PSTLLDHGNEHFRIGLGRRNLPEVLKIFENYLRERGTK"
     gene            3507..3761
                     /locus_tag="VKJ77_22765"
     CDS             3507..3761
                     /locus_tag="VKJ77_22765"
                     /inference="COORDINATES: protein motif:HMM:NF039785.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6440 family protein"
                     /protein_id="HMC48157.1"
                     /translation="MKWLLVSLAALVGYSAHAQNAEPKQATSVASPRFTRDTTEDINI
                     QMETDHETGCRYLIAQGQGITPLLKSNGTPDCNAPKLGQQ"
BASE COUNT          750 a         1189 c         1133 g          720 t
ORIGIN      
        1 tctgcgaccc gcccgctcaa cgcgggccat gcagtggtct gcgcggctgc atcgagccat
       61 gcgagccggt gctcgtctac gcgcaataac gtgagggaaa tgccagccat ctcgagcgcg
      121 ctcaggaacg tgcccgacca cgcgcgctcg acctgaatcc gatgttcgcg aagatagctc
      181 agcgccgatc ccgccacaat gctcagctcg ctcgacggcg tgccgcccag attgttcacg
      241 agcaacgcga cgcggtcatc gggcttcaat gcaagatcgt cgatgatctt cgcgagcagc
      301 cgcccgacaa tcttccccgc cggttcgagc gcgccgcgct ccacgcccgg ctcgccgtga
      361 atgccaagac cccattcgat ttcatcgtcg gcgagctgga agcccggctt gccagcggcg
      421 ggcaccgtgc acggcgtaag ggccacgccc atggtgccaa gcgatgccgc cgtgtcgcgc
      481 gcaatctgcg ctacttcacc gagcggccgg ccctcggcgg cggcggcgcc cgcgatcttg
      541 tgcacgaaca cggtccctgc aagaccacgc cggccggcgt gctcgccgtg tgccgacaga
      601 gcgacatcgt cggcgacgat caccatctcc accgcaatgc cctcagctcg cgcgatctcc
      661 gcggcaaggc cgaaattgaa gcggtcgccc gtgtagttct tgacgatgag aaggacgccc
      721 gcggagccgg caacggcacg gatggcatcg aggacggcat cggtcgaggg cgacgtgaag
      781 acctcgccgg cgaccgcagc gctaagcatg ccggggccca cgtaaccgcc gtgagcgggt
      841 tcatgccccg agcccccgcc cgagatcagg gccacttcac cgcgcgctgc tgccgcctcg
      901 gcatctgcgc gcacgatgat cgtgctgccc tgcagcaacg acaaacccgg gttgagcgcg
      961 gcgagtccat cgagcatgtc gggcacgacc gcggagacgt cgttgatgag cttcttcatg
     1021 tcagccatcc tccttggaag ccgctggctc ttcgctacga gccctgcgtg gttgggagac
     1081 atgatagatg gcctgactac atcgcgcttt tgcgttctta aatcgcgctg gtcagtcgag
     1141 aaactcagtc gaaaaaaatc agtcgagaaa ctcggtcgcg cgctgctgaa gcatggccct
     1201 gaagtcatcg agccaaccga tggacagtcg ccagctctgc caatacagat cgacgtcgat
     1261 atgcgcgccc ggcaccattt caaccagctc gcccgacgcg agcgcaggcc cgatcatctg
     1321 cgtgggacac atgccccacg ccatgccaga caggcacgcg cgcagatagc ccgcaacgtg
     1381 cggaatcagg tgccgcggcg gatcgagatc cgcccgcgtg atccgccgca tgaagcgctt
     1441 ttgcatctga tctttcggac tgaagtcgac gcgcggcgcg tgacgcagcg catcgcgcgt
     1501 gacccccgcg ccgaagtgcc ggtcgaagta cgccggtgag caaacgggca ggtagcgcat
     1561 gcgcccgagc ttggtcgagc ggcatccctg cacgggctcg gcctgcgtgg tgaccgcccc
     1621 ttgcacgctg ccgtcgcgga gttgttgcgc cgtgtattcc tgatcttcga taaccaggtc
     1681 cagcagcatt tcccgttcgg cgcagaaacc ggagatggcg tcgatgaacc aggtgccgac
     1741 gctgtcgtcg ttgaccgcca tgcgaaatgt cggccacttt ccggcgagca tgcccggtaa
     1801 ggtcggcatc tgcccgccca gttctgtttc gagacgttgc acgcgttcta tatgacggca
     1861 aagcagcgcg cccggaggcg tggcaataca cggttgaccg cgcttcacca gcacgcttcc
     1921 gactctttcc tccagcagct tcacccgctg tgaaacggcc gatggcgtca cgttcagttc
     1981 ccgcgcggcg cgatcgaacg agccgaggcg cacgactgcg ccgagtgcat cgagcaaggc
     2041 gtaatctaac attaggaaaa tttaactcgc attagaaaag ttagcttctt ttaagcgttg
     2101 acgaagggca gactacgccg gttggtagcg tccgtccacc ggcctttttg ccgggccaag
     2161 gctccggctg ccgcacgtgc gcgacttgct acccgctgca aagacagcac cttttcccgg
     2221 aaaaaaccat gactccatcg ccgtttcaac tcgagcgtta tttcgccgtt cacgaattca
     2281 ccgcacgcta tctgctgtgc agttctgatc cggagtccat gtcgattacg gatctgcttg
     2341 cgttcgaacc cggttctatg gaaggccttg gcagcttgcg cctgggatac actgaatatc
     2401 ccggtgcgcc tgaacttcgg cgagaacttg cgacgttgta cgaatcaatc gatattgata
     2461 acctgatcgt gcacacgggc gctcaggaag cgattttctc gttcgtccat tcgatgctca
     2521 aggcaggcga tcatatgatc gtccacatgc ccggttatca gtcgcattac tcgatcgccg
     2581 aggcggcggg tgttgccgtg tcgccgtggc ttgcacgcga atcggagaat tgggccctgg
     2641 atcccgacga gttggagaag ctcgtcaggc cggaaacgaa agcgttgctg atctgcgccc
     2701 cgcacaatcc gacaggttat ctgcctgagc gcgagcggtt tgaagcaatc gtcgatttct
     2761 gccggcgacg cggtctatgg ctattcagcg acgaggttta tcgagggctg gagcatgatc
     2821 ccgcaacgcg tttaccggcg gcctgcgatc tctatgagaa ggcgatatcg ctcggggctt
     2881 tgtcgaagtc gcatggcttg gcggggctgc gcattggctg ggtcgccagc cgggatcgcg
     2941 atgtgcttgc ggccatgagc acgttcaagg actacctgac catctgcaat agcgcgccca
     3001 gcgagtatct cgcggccatt gcggtgcgta acaccagtgc gttgatcgaa cgcaatacgt
     3061 cgattgtcag gaacaacctc gccatcctcg atccgttctt cgaacgtcat caagagatcc
     3121 tggcgtggcg ccggccggcc gcagggacgg tcgctttccc tagactgaag cacgggggag
     3181 cagagcgctt ctgtgccgaa gtcctcgagc gtaccggtgt gcttctgctt cccagcactc
     3241 tgctcgatca tggcaacgag catttccgta tcggcctggg acggagaaat ttgccggagg
     3301 tcctgaaaat atttgagaac tatttgcgcg agcgcggtac gaagtaaaac caccggggaa
     3361 gagccgaccg gcccaggttt gtcggcttat cccgttacgg ggccagtgcc agagcgcatt
     3421 ggcgctttac ccttgccgat tcactcgtac actaagaggt gcaatatcgc taagactcac
     3481 cgactgcaaa tcacggagta caaaatatga agtggctact tgtatcgctt gcagcgttgg
     3541 ttggatacag cgcacatgct cagaacgctg aaccgaagca ggccaccagt gtcgcctcac
     3601 cgcggttcac tcgcgatacc acggaggaca tcaacattca gatggaaacg gatcacgaaa
     3661 caggttgccg ttatctgatt gcacaaggcc agggcatcac gccgcttctg aagagtaacg
     3721 gcacgcccga ctgcaacgcg ccgaaactcg ggcagcaata gccaatgcgc agtgtagcga
     3781 ggtcttgatc ga
//
LOCUS       DATGBK010001622         1591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_42721, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001622 DATGBK010000000
VERSION     DATGBK010001622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42721"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..1023)
                     /locus_tag="VKJ77_22770"
     CDS             complement(19..1023)
                     /locus_tag="VKJ77_22770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48158.1"
                     /translation="MAKPDSALALTRRRHLSWETMLVVVLVLGLILGRVLSPVFLSSA
                     NLSNMLADFTEIALIALPMTLIIVAAEIDLSVASVLGASSALMGVLWHMGLPLPLVIA
                     IVLVAGTLAGLFNGLVIVRFNLPSLAVTIGTLALFRGLAYVLLGDQAVADFPASYTAF
                     GMDTVAAFLPMPFVLVIIGAVVFTVLLQATPFGRSLYAIGANPVAAQFSGIDVARTKL
                     KLFMLSGAMSALAGVVYTLRFTSARGDNGEGFELSVIAAVLFGGVSIFGGRGSMIGVL
                     LSLLIIGVLRNALTLSDVSSETLTIVTGGLLLSSVLIPNLVARWRVMREKRLMTQTLI
                     "
     gene            complement(1016..>1591)
                     /locus_tag="VKJ77_22775"
     CDS             complement(1016..>1591)
                     /locus_tag="VKJ77_22775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018425424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48159.1"
                     /translation="AWVHGGQINATSLPDAFSRIATGSLLGLPNLVLIAVVVLFAIGV
                     YLKQYRGGREHYAIGSNPEAARLAGIRVERRVMIGFLLSGAIAGLAGVLWLARFGTVE
                     ASTAKGIELQVVAAAVVGSVAITGGVGTILGATLGALVLGVINIALVVLRVSPFWQQA
                     IQGALIVAAITLDTLLARSVARRMMRKRDHG"
BASE COUNT          385 a          534 c          455 g          217 t
ORIGIN      
        1 gttttaaaaa gccaagcttc agataagcgt ctgcgtcatc aagcgctttt cgcgcatgac
       61 acgccaacgt gcaacaagat tcggaatcag caccgacgac aacaacaaac caccggtcac
      121 aatggtcagc gtctcgctcg acacatccga gagcgtcaac gcattgcgca acacgccgat
      181 gatcagcaac gacagcagca cgccgatcat ggacccgcgt ccaccgaaga tgctcacgcc
      241 gccgaacagc acagccgcaa tcaccgacag ttcgaagccc tcgccgttgt caccgcgagc
      301 gctggtgaag cgcaacgtgt agaccacgcc cgcgagcgca ctcatcgcgc cggacagcat
      361 gaaaagcttg agcttcgtac gcgccacgtc aatgccggaa aactgcgcgg caacgggatt
      421 cgcaccaatc gcgtaaaggc tgcgtccgaa cggcgtagct tgcagaagca cagtgaaaac
      481 aaccgcccca atgatgacaa ggacaaacgg catgggcagg aacgcggcga cggtatccat
      541 cccgaacgcc gtataagacg cgggaaaatc cgcgaccgcc tggtccccga gcaacacgta
      601 cgccaggcca cgaaacagcg ccagggtgcc gatggtgacg gccagcgacg ggagattgaa
      661 gcgcacgatc accagcccgt tgaacaggcc ggcaagcgtt cccgcgacca atacaatggc
      721 gatcacaagc ggcaggggca ggcccatgtg ccagagcacg cccatcagcg cactcgatgc
      781 gccgagcacg gacgccaccg acagatcgat ttcagcggcg acaatgatca atgtcatcgg
      841 caacgcgatc agcgcgatct cggtgaagtc ggcaagcatg ttcgagaggt tggcgctcga
      901 taggaacacc ggcgacaaca cgcgcccgag gatcagtccc agcacgagca ccaccaccag
      961 catggtttcc cacgagagat gccggcgccg ggtcaaagcg agtgcggaat cgggtttagc
     1021 catgatcgcg tttcctcatc atgcggcgcg caaccgagcg cgccagcagt gtgtcgagcg
     1081 tgatcgccgc gacgatcaac gctccctgaa tggcctgctg ccagaacggc gatacgcgca
     1141 acaccaccag cgcaatgttg atcacgccta gcacaagcgc accaagcgtt gcgccgagga
     1201 tggtgcccac gccgcccgtg atcgccacgc tgcccaccac ggctgcggcc accacctgca
     1261 gttcgatgcc cttcgcggtg ctcgcttcga ccgtgccgaa acgcgccagc cacagcacgc
     1321 ccgcgaggcc cgcaatcgcg ccggacaaca ggaagccgat catcacgcgg cgctctacgc
     1381 gaatacctgc aagccgtgcg gcttcggggt tcgacccgat cgcgtagtgc tcacgcccgc
     1441 cacgatattg cttgagatag acgcctatcg cgaacagcac gaccactgct atcagcacca
     1501 ggttcggcaa gccaagcagt gaacccgtag caatgcgcga gaacgcatcc gggaggctgg
     1561 tcgcgttgat ctggccgcca tggacccagg c
//
LOCUS       DATGBK010001623         1683 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_18846, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001623 DATGBK010000000
VERSION     DATGBK010001623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18846"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..426
                     /locus_tag="VKJ77_22780"
     CDS             <1..426
                     /locus_tag="VKJ77_22780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48160.1"
                     /translation="VAVNCMCAQTGRPEDFGFQVDGDTVNVPLGGFVQVSDEHAYLEC
                     GLRGLGLIQPPRTLAQPYLDSGRLREVLPRYRPAAVPVSVAYLRHRLVPPRVRAFVNW
                     LAELFETARHVSHELPLEIPHQLSGMRPILRGLEADEPV"
     gene            complement(450..740)
                     /locus_tag="VKJ77_22785"
     CDS             complement(450..740)
                     /locus_tag="VKJ77_22785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48161.1"
                     /translation="MPENQQKPESDTPSNPERISAAPQKRRRWQPSNALRSSLMVLAG
                     FIAFVIVSGIVLYKPIMYGDMIENFGIVMMLTVPVIAAVAFRVGLDSWLDAE"
     gene            1223..1666
                     /locus_tag="VKJ77_22790"
     CDS             1223..1666
                     /locus_tag="VKJ77_22790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007875456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HMC48162.1"
                     /translation="MNRLVGVTSLIEENVNSLLAGRCLCGAVHYAVKDEFVYALNCHC
                     SNCRRATGSAFKPFAGIERSKLSITQGHGDLLIFGDENAAHDVHCRICGSFLFSVVGE
                     GEFVHVTLGTLSDTPTIRPTAHIFVGSKAPWYSITDQLPQHDEFG"
BASE COUNT          335 a          477 c          507 g          364 t
ORIGIN      
        1 gtcgcggtga attgcatgtg cgcgcagacc gggcgtccgg aggacttcgg ttttcaagtc
       61 gatggcgaca cggtcaacgt gccgcttggc ggcttcgtgc aagtcagcga cgagcatgcc
      121 tatctggagt gcgggctgcg agggctaggg ctgatccagc cgccgcggac gctcgcgcag
      181 ccgtatcttg actccgggcg gctgcgtgaa gtgctgccgc gctaccggcc cgcagccgtg
      241 ccggtgtcgg ttgcctatct gcgtcatcgc ctcgttccgc cgcgcgtgcg tgcgttcgtc
      301 aactggctcg cagaactgtt cgaaaccgcg cggcacgtga gtcatgagtt gccactcgaa
      361 ataccacatc aactgtcagg catgcgcccg atcctgcgtg ggctggaggc ggatgaaccg
      421 gtctgagcga gcggagtctc cgacccgatt tactccgcgt ccagccagga atcgagaccc
      481 acgcggaacg cgacggctgc aatcaccgga accgtcagca tcatgacgat gccgaagttc
      541 tcgatcatgt cgccgtacat gatcggtttg tacagaacaa tgcccgagac gataacgaag
      601 gcgataaaac ccgcgagcac catcaggctg ctgcgcagcg cattggacgg ctgccagcgc
      661 cgccgctttt gcggggcggc actgatccgc tccgggttcg aaggcgtgtc ggattctggt
      721 ttctgttgat tttctggcat ggcgcagcga ggtgaggggc ggccgaatgc gtaaatgacg
      781 cgctgcactc gggtttttca attggaacat gtcatggcgc gtaatgccga tcgtaacaag
      841 gcgatgagca taccggcata caacaattgt ggcacaggca gagcgccctg agcagaacgc
      901 ctttagttca tgcccgtgga acgtaactgt ttgccatcgg tgagggttac gggcgacccg
      961 aattcgccca aagaacggcg ctttcattct ccattcatac cgcggcgctt atctagtcca
     1021 aattgcccgc tgccttggct gggcgttctt cgcgttgcgc gccttcatcg gatttttcgt
     1081 gccggcacgg ccgtgagctg cccggcaacg tggatcgaac cggtcagcaa aacacctcgc
     1141 taaaaacgca ctagaatgtc tgccgacgct aacattcttg agtgtcggcg agaggccgcg
     1201 cgattccacc gatcaaaact tgatgaaccg gttagtcggc gtaacttctt tgatagagga
     1261 aaacgtgaat tcattgcttg caggcagatg cctttgcggc gcagtccact acgcagtgaa
     1321 ggacgagttc gtttatgcat tgaactgcca ctgttcaaac tgccggcgcg cgacgggttc
     1381 tgcgttcaag ccattcgcgg gaatcgagcg cagcaagtta agcattactc aagggcacgg
     1441 cgaccttttg attttcggtg acgaaaacgc ggctcacgat gttcattgca ggatctgcgg
     1501 gagttttttg ttttccgtgg tgggtgaggg cgagttcgtt cacgtcactt taggaacgct
     1561 cagcgacacc ccaactattc gcccgaccgc acacattttt gtcgggtcca aggcgccgtg
     1621 gtattccatc accgaccaat tgccgcagca cgacgaattt ggctagcatg gtgaatcggc
     1681 gat
//
LOCUS       DATGBK010001624         1664 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_65824, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001624 DATGBK010000000
VERSION     DATGBK010001624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65824"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1007
                     /locus_tag="VKJ77_22795"
     CDS             <1..1007
                     /locus_tag="VKJ77_22795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007738743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48163.1"
                     /translation="GLSGSGKSTLARCINRLNEPSAGKILLDDQDICTLDEAGLRDVR
                     RNRISMVFQHFALLPNRRVIENVEFGLKLRGMSAPQRRKRAEEVLSVVGLARWAYHMP
                     HELSGGMRQRVGLARALATDADILIMDEAFSALDPLIRTEMQDELLRLQRTLSKTILF
                     ITHDFQEALKLGSRIAIMSEGRLVREGTPQSIVLEPGSDYVAAFTREVDRGRLFDAGS
                     VMTSLVTILRGPDGIVLGDASGEPGPGFMLDADERILGTVTASEIELARGGSMPRPDT
                     RFTCVPAHTKLVDVAGSYRAGGTIGVIDDTGRLIGRLEAGQILAGIGAPGATGVRHVN
                     "
     gene            997..>1664
                     /locus_tag="VKJ77_22800"
     CDS             997..>1664
                     /locus_tag="VKJ77_22800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC48164.1"
                     /translation="MLIKADDLAGLPVGDWIQHGVQWIALNLRPFFLLIKWPVERLLN
                     FNDSVLHAIPFPVMLLLMFLLAWRLASLGVAAFTLVGLIVIAMLGVWDQAITTLSLIA
                     TAIVFCAVIGIPIGIWCARSDRVWRIVRPVLDIMQTTPTFVYLVPVVMLFGVGTVPGE
                     VAVVITAMPPLIRFTHLGIRMVDHEIVEAGLAFGADKRQLLWEVQLPLAIPTILGGLN
                     QTVLT"
BASE COUNT          271 a          506 c          544 g          343 t
ORIGIN      
        1 tgggactgtc gggctcgggc aagtccacgc ttgcacgctg catcaatcgg ctcaacgaac
       61 cgagcgccgg aaagatcctg ctggacgacc aggacatctg cacgctcgat gaagccggtt
      121 tgcgcgacgt gcgacgtaat cgcatctcca tggtcttcca gcatttcgcg ttgctgccta
      181 atcggcgtgt gatcgaaaac gtcgagttcg ggttgaaact gcgcggcatg tcggccccgc
      241 agcggcgcaa gcgcgccgag gaagtgctga gtgttgtcgg cctcgcgcgc tgggcatatc
      301 acatgccgca tgaactgagc ggcgggatgc gtcagcgcgt gggcctggcg cgtgcgctcg
      361 cgaccgacgc cgacattctc atcatggacg aagcgttcag cgcgctggac ccgctgatcc
      421 gtaccgagat gcaggacgag ttgctgcgct tgcagcgcac gttgagcaag acgatattgt
      481 tcatcacgca cgacttccag gaggcgctca agctcggttc gcgcatcgcc atcatgtcgg
      541 aggggcggct cgtgcgcgaa ggcacgccgc agtccatcgt gcttgaaccc ggcagcgatt
      601 acgtcgccgc gttcacgcgt gaagtcgacc gtggacggct gttcgatgca gggtcggtga
      661 tgacctcgct cgtgaccatc ctgcgcggac cggacgggat cgtgctgggc gatgcttccg
      721 gcgaaccggg accgggcttc atgctcgacg ccgatgaacg catccttggc accgtgacgg
      781 cgtccgagat cgaactcgcg cgcggtggct cgatgccccg gccggacacg cgctttacgt
      841 gtgtgcccgc ccataccaag ctcgtcgatg tcgccggcag ttatcgcgcc ggcggaacga
      901 tcggcgtcat agacgacacc ggccggctga taggccgtct ggaagccggg cagattctgg
      961 ccggcattgg cgcgcctggc gccacgggag tacgccatgt taattaaagc cgatgatctc
     1021 gcaggcctgc cggtcggcga ttggatccag cacggtgtgc aatggatcgc actcaacttg
     1081 cggccgttct tcctgctcat caaatggccc gttgaacggc tgctgaactt caacgacagc
     1141 gtgcttcacg cgatcccgtt cccggtcatg ctgttgttga tgttcctgct cgcgtggcgc
     1201 ttggcgagcc tgggggtcgc tgcgttcacc ttggttgggc tgattgttat cgcgatgctg
     1261 ggcgtctggg atcaagccat cacaacgctc tcgctgatcg caacagccat tgtgttctgt
     1321 gcggtgatcg gcattccgat cggcatctgg tgtgcgcgca gcgaccgggt ctggcggatc
     1381 gtccggccgg tgctggacat catgcagacc acgccgacgt ttgtgtatct cgtgcccgtg
     1441 gtgatgctct ttggtgttgg tacggtaccg ggcgaggtcg cggtcgtcat cacggccatg
     1501 ccgccgctga tacgctttac ccacctcggg attcgcatgg tcgaccatga gatcgtggag
     1561 gcgggtctcg cgttcggcgc ggacaaacgc cagcttcttt gggaggttca gttgccgctg
     1621 gcaatcccga cgatccttgg cggtctcaac cagaccgtgc tcac
//
LOCUS       DATGBK010001625         1928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_180904, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001625 DATGBK010000000
VERSION     DATGBK010001625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180904"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..467
                     /locus_tag="VKJ77_22805"
     CDS             <1..467
                     /locus_tag="VKJ77_22805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucosidase"
                     /protein_id="HMC48165.1"
                     /translation="PAESDSRVFGGNSNWRGPIWMPVNYLLIESLYEFHRYYGDDFRV
                     EYPTGSGQKLSLSDIADELARRLTRLFLKDKNGVRPVMAAYPQLQADPRSEDLVLFHE
                     YFHGDTGRGVGASHQTGWSGLVALLLQPRVSTVAQNLPVGSEVQPEVELAAK"
     gene            complement(567..1628)
                     /locus_tag="VKJ77_22810"
     CDS             complement(567..1628)
                     /locus_tag="VKJ77_22810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HMC48166.1"
                     /translation="MLFALFGLAGLVAQAHAQADYKIVTGPERGTYIQIGQDLAKIVA
                     DPIGMNLDVLASKGSAENVQRMRYEPGVKFALVQSDVYQAYLDMAKAGNPEAGKIIQP
                     LRLIMPLYNEEIYFVVRSDSPLNYIHEIKDKNISVGLIGSGTAQSATTLYRLMFNEPI
                     PDQYAQHYSNEDALAKLIVRKLDVAVIVAGQPAKLFQDLNPELLSQIKLLKLDPSVPE
                     TARAEQTYFAATIRTSSYPNWIKEDSPTLTVKAFLVTYDYNLRGTVGALTQFADSLCT
                     HFDDLQANGHPKWKQVKMELPPLSSGWKYYPPIEKRLRACIRKMASTGGDAATPVTQH
                     APKRACTDAEKVLMLCHDE"
BASE COUNT          328 a          564 c          604 g          432 t
ORIGIN      
        1 tgccggcgga atcggattcg cgggtgttcg gcggtaactc aaactggcgc gggccgatct
       61 ggatgcccgt caactatttg ttgattgagt cgctatacga atttcatcgt tattacggcg
      121 atgatttccg cgtggaatat ccgaccggat cgggccagaa actttcgctg agcgacatag
      181 ccgacgaact cgcgcgacgc ctcacgcgcc tgttcctgaa ggacaagaac ggcgtgcgcc
      241 cggtcatggc cgcctatccg caactgcagg cggacccgcg ttcggaggac cttgtgctgt
      301 tccatgaata ctttcatggc gatacagggc gcggcgtggg cgcgtcgcat cagacgggct
      361 ggagcgggct ggtcgcgttg ctgttgcagc cgcgcgtgag caccgtggca cagaacctgc
      421 cggtcggcag cgaggttcag cccgaagtgg aactggcggc gaagtgatgg agtgacgaag
      481 tgacgaagtg atgaggcagg caggcgggcg gcggttcgct ccacctcggc ccgcccgcca
      541 ccgctagtcc tattgcgccg tccgcgtcat tcgtcgtgac acaacatcaa caccttctcc
      601 gcatcggtgc atgcgcgctt cggcgcgtgt tgcgtcacgg gcgttgccgc atcgccgcct
      661 gtagacgcca tcttgcggat gcacgcccgc aagcgctttt ctattggcgg atagtatttc
      721 cagccgctgc tgagcggcgg caattccatc ttcacctgct tccatttcgg atggccgttg
      781 gcctgcaagt cgtcgaaatg tgtgcaaagc gagtcggcga attgcgtcaa tgcgccgacg
      841 gtgccgcgca agttgtaatc gtaggtgacg agaaacgcct tcacggtcag cgtgggcgag
      901 tcttccttga tccagttcgg ataactcgac gtgcggatgg tggccgcgaa ataggtctgc
      961 tcagcacgcg cggtttcggg gactgaagga tcgagcttga gcagcttgat ctggctcagc
     1021 agttccgggt tcaggtcctg aaacagcttg gccggctgcc ccgccacgat gaccgccaca
     1081 tcgagtttgc gcacgatcag ttttgcgagc gcgtcctcgt tgctatagtg ctgcgcgtac
     1141 tggtcgggga tcggctcgtt gaacatcagc ctgtagagcg tggtcgccga ttgcgccgtg
     1201 ccgctgccga tcagcccgac gctgatgttc ttgtccttga tctcgtggat gtagttcagc
     1261 ggcgaatcgg accggacaac gaagtaaatt tcttcgttat acagcggcat gatgaggcgc
     1321 agcggctgga tgatcttgcc cgcttccggg ttgccggctt tcgccatatc gaggtaagcc
     1381 tggtacacgt ccgactgcac gagcgcgaat ttcacgcccg gctcgtaacg catgcgctgc
     1441 acgttttcgg cggagccttt tgatgcgagc acatcgaggt tcatgcctat cggatcggca
     1501 actatcttcg ccaggtcctg gcctatctgg atgtaagtgc cgcgttccgg tccggtgacg
     1561 atcttgtagt cggcttgcgc atgagcctgc gccacgaggc cggcgagccc gaagagggcg
     1621 aacagcatga ggaaagtctt gtgcatgatg tcgtttgagt cgttttaatg tgttggccaa
     1681 ctttcattac acggatagac cacggcggcc tgcgtctccc gacgcggcct tcaccctcct
     1741 caaaatctcc tgttccctgt ctcctgtctt gcttctactg cggcgtcgag cgttgcgccg
     1801 acgacgggct cttgctccag ccggactcca ggatcgcgcg ctcttcctcg tcgggattgt
     1861 ttgcgttgaa gaccggcgca tgcgatcccg tgcctatgcg agtcggttcg ggaacggcct
     1921 gcgccgcc
//
LOCUS       DATGBK010001626         5628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_158019, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001626 DATGBK010000000
VERSION     DATGBK010001626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5628
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158019"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /gene="fdx"
                     /locus_tag="VKJ77_22815"
     CDS             complement(<1..279)
                     /gene="fdx"
                     /locus_tag="VKJ77_22815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HMC48167.1"
                     /translation="MPQIVVLPHVELCPDGAVIDADTSKSICDNLLDNGIEIEHACEK
                     SCACTTCHVIIREGFNALVPSEEDEDDLLDKAWGLEPTSRLSCQAMVPA"
     gene            complement(323..2188)
                     /gene="hscA"
                     /locus_tag="VKJ77_22820"
     CDS             complement(323..2188)
                     /gene="hscA"
                     /locus_tag="VKJ77_22820"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015876413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HMC48168.1"
                     /translation="MALLQISEPGMAPAPHQRRVAVGIDLGTTNSLVAAVRNSVAEVL
                     PDEDGHYLLPSVVRYLEKGGRRIGRVAKEEAALDPRNTIVSVKRFMGRGKSEVEGAEN
                     APYDFVDAPGMVQIRTVDGVKSPVEVSAEILATLRYRAEDTLADELVGAVITVPAYFD
                     EAQRQATKDAAKLAGLNVLRLLNEPTAAAIAYGLDNASEGLYAVYDLGGGTFDLSILK
                     LTKGVFEVLAAGGDSALGGDDFDAVLYRHVLVKSKVTPASPEDVRLLLDRVRTAKEAL
                     SDTSEATIQATLSDDQQIDFTVTESDFATLTEALVARTLTPTRKALRDAKVAPAEVKG
                     VVLVGGATRMPVIRRAVETYFGQPPLTNLDPDQVVALGAAIQADLLAGNRRGEGDDWL
                     LLDVIPLSLGVETMGGLTEKIIPRNSTIPVARAQDFTTFKDGQTAMAIHVVQGERELV
                     SDCRSLARFELRGIPAMAAGAARIRVTYQVDADGLLSVFAREQLSGVEASVVVKPSYG
                     LADDDVARMLEESFTTAEVDMRARALREAQVDAQRLVEASQAALGVDGELLDEAERTN
                     IDALIVKLAAVTGGDSVDAIETATKELAAATDEFAARRMNKSIRRALAGRRLDEV"
     gene            complement(2231..2755)
                     /gene="hscB"
                     /locus_tag="VKJ77_22825"
     CDS             complement(2231..2755)
                     /gene="hscB"
                     /locus_tag="VKJ77_22825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0051259 - protein complex oligomerization
                     [Evidence IEA];
                     GO_process: GO:0097428 - protein maturation by iron-sulfur
                     cluster transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HMC48169.1"
                     /translation="MATLNDSHFDLFDLPPTYAIDAKQLDDAYRTVQAQVHPDRFAAA
                     GDAQKRVAMQWATRANEAYQTLRDPLKRAIYMLSLRGVHADAENNTAMEPAFLMQQME
                     WRENIEDAADAKNLGALEALLHELRDQERIRFEKLAALIDSHADQAASEAVRQLMFIE
                     RVASEIGVQIEKLD"
     gene            complement(2850..3173)
                     /gene="iscA"
                     /locus_tag="VKJ77_22830"
     CDS             complement(2850..3173)
                     /gene="iscA"
                     /locus_tag="VKJ77_22830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018417526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HMC48170.1"
                     /translation="MAITLTDKAAQHVQKYLVRRGKGVGLRVGVRTTGCSGLAYKLEY
                     VDELAPEDKVFESAGVKIIVDPKSLAYIDGTELDFAREGLNEGFKFNNPNVKDECGCG
                     ESFRV"
     gene            complement(3334..3762)
                     /gene="iscU"
                     /locus_tag="VKJ77_22835"
     CDS             complement(3334..3762)
                     /gene="iscU"
                     /locus_tag="VKJ77_22835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HMC48171.1"
                     /translation="MAYSDKVLDHYENPRNVGSFGKDDDTVGTGMVGAPACGDVMKLQ
                     IRVGADGVIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDQALTIKNTHIAEELALPPV
                     KIHCSILAEDAIKAAVADYKQRHGAGTAEAAPVEAKQHAA"
     gene            complement(3844..5067)
                     /locus_tag="VKJ77_22840"
     CDS             complement(3844..5067)
                     /locus_tag="VKJ77_22840"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HMC48172.1"
                     /translation="MNNDIPHLPIYMDYSATTPVDPRVVDKMIPYLREQFGNPASRSH
                     QYGWDAERAVEEARENVAKLVNCDPREIIWTSGATESDNLAIKGAAHFYKSKGKHIIT
                     VKTEHKAVLDTCRELEREGFEVTYLDVKDDGLLDLDKLQAAIRPDTILVSVMSVNNEI
                     GVIQDVAAIGEITRAKGIIFHVDAAQATGKIEIDLQKQKVDLMSFSAHKTYGPKGIGA
                     LFVRRKPRIRIEAQMHGGGHERGMRSGTLATHQIVGMGEAFRIAREEMAVENERVRML
                     RDRLLNGLKEMEEVYVNGDMDIRVPHNLNISFNFVEGESLIMAVKDVAVSSGSACTSA
                     SLEPSYVLRALGRNDELAHSSIRFTVGRFTTEQDVDYVINLLKGKIQKLRDLSPLWEM
                     HKDGIDISSIQWAAH"
     gene            complement(5144..>5628)
                     /locus_tag="VKJ77_22845"
     CDS             complement(5144..>5628)
                     /locus_tag="VKJ77_22845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HMC48173.1"
                     /translation="DLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVR
                     GPGGGYNLARRVENVTVADIIIAVDEPIDATQCGGKGACEGTKQHDGHCMTHELWSTL
                     NQKMVEYLDSVSLKDLVDQQRAREGSPAVLRDRRAESAGVEPVRVAPKGPNSVFNLAG
                     "
BASE COUNT         1054 a         1808 c         1572 g         1194 t
ORIGIN      
        1 tgcgggcacc atcgcctgac atgataaccg cgacgtcggc tcaagtcccc aggccttatc
       61 gagcaaatcg tcctcgtctt cttccgacgg cacaagcgcg ttaaaaccct cgcggatgat
      121 cacgtgacac gtcgtgcacg cgcaggactt ttcgcacgcg tgttcaatct cgataccgtt
      181 gtccaacagg ttgtcgcaaa tgctcttcga cgtatccgcg tcgatcaccg cgccatcagg
      241 acacaattcc acatggggta acactacgat ctgaggcatg aatttctttc cgttctttgt
      301 gcgtgagagg ctcggtgatt tatcagactt cgtcgagcct gcggccggcg agcgcacggc
      361 gaatgctctt gttcatgcgg cgggcagcga attcatcggt ggcggcggca agctccttcg
      421 tcgccgtttc gatggcatcg acgctgtcgc ctcccgtgac cgccgcaagc ttgacgatca
      481 gcgcgtcaat gttggttcgc tccgcttcat ccagcagttc gccgtccacg ccgagcgccg
      541 cctgcgacgc ttccaccaga cgttgcgcgt cgacctgcgc ctcacgcaac gcgcgggcgc
      601 gcatgtcgac ttcggcggtc gtgaagcttt cttccagcat gcgcgcgacg tcgtcatcgg
      661 cgagaccgta ggatggcttc accaccaccg acgcctccac gcccgacaat tgctcacgtg
      721 cgaacacgga caacaacccg tccgcgtcga cctggtacgt cactcgaatg cgcgcagcgc
      781 cagcggccat ggcgggaatg ccgcgcaact cgaagcgcgc gagcgaacgg cagtccgaga
      841 ccagctcgcg ctcgccttgc acgacgtgga ttgccatcgc cgtctggccg tctttgaagg
      901 tggtgaaatc ctgggcgcgt gcgaccggaa tggtcgagtt gcgcgggatg atcttctcgg
      961 tcagtccgcc catggtctca acgccgagcg acagcggaat gacatcgagc agcagccagt
     1021 catcgccttc accgcgacga tttcccgcca gcaagtccgc ctggatggcg gcgccgagcg
     1081 ccacgacctg atcagggtcg agattggtca acggcggctg gccgaagtac gtttccaccg
     1141 cgcgacggat caccggcatg cgcgtggcac cgccgacaag caccacgccc ttgacctcgg
     1201 cgggcgccac cttggcatcg cgcaaggcct tgcgcgtggg ggtcaaggtg cgggcgacca
     1261 gcgcttcagt cagcgtggcg aagtcgcttt cagtgaccgt gaaatctatt tgctggtcat
     1321 cggacaatgt ggcttgaatt gtggcctcag atgtatccga cagcgcttcc ttagccgttc
     1381 gcacgcggtc cagcagcaga cgcacgtctt ctggcgaagc gggcgttacc ttggatttca
     1441 ccagcacgtg ccgatacagc accgcatcga aatcgtcgcc gccgagcgct gaatcgccgc
     1501 ccgctgcgag cacttcgaac acacctttgg tgagcttgag aatcgacaga tcaaaggtgc
     1561 caccgccgag gtcatacacg gcgtacaagc cttccgatgc gttgtccagc ccgtacgcaa
     1621 tcgccgcagc ggtcggttcg ttcaagaggc gcagcacgtt caaaccggca agtttcgcgg
     1681 cgtctttcgt ggcttgccgc tgggcttcat cgaagtaagc gggcaccgtg atcaccgcgc
     1741 cgaccagctc gtcggccagc gtgtcttccg cgcggtatcg cagcgtcgcc aaaatttccg
     1801 ccgatacttc caccggactt ttcacgccat cgacggtgcg aatctgcacc atgcccggtg
     1861 catcgacgaa atcgtacggc gcgttttccg ccccttccac ttcgctcttg ccgcgaccca
     1921 tgaagcgctt caccgacaca atcgtgttgc gcggatcgag cgccgcttct tcctttgcga
     1981 cgcggccgat acgccggccg cccttctcca gataccggac caccgacggc agcaggtaat
     2041 gcccatcttc gtcgggcagc acttcggcca cgctgttgcg cacggcggca accagcgaat
     2101 tggtcgtacc gaggtcgatg cccacggcta cccgccgctg atgcggcgcc ggagccatgc
     2161 cgggttctga aatttgcagt aaagccatcg ttgatctatt gggggttggt gtcgtctggt
     2221 ttggtcgaac ttaatcgagc ttttcgatct gcacgccgat ctcgctcgcc acgcgttcaa
     2281 tgaacatcaa ctggcgcacg gcttcgctcg ccgcctggtc cgcatggctg tcgatcagcg
     2341 ccgccagttt ctcgaagcgg atgcgttcct gatcgcgcag ttcatgaagc aaggcttcga
     2401 gtgcgccaag atttttggcg tccgccgcgt cctctatgtt ttcgcgccat tccatttgct
     2461 gcatcaggaa ggcgggttcc atcgcggtgt tgttctctgc gtcggcatgc acgccacgca
     2521 gcgacaacat gtagatcgcc cgtttcagcg gatcgcgcag cgtctgatag gcctcgttcg
     2581 cgcgcgtggc ccactgcatc gcgacgcgtt tttgcgcgtc gccagcggcc gcaaaacgat
     2641 cgggatgaac ctgcgcctgc accgtgcgat acgcgtcatc gagctgtttt gcatcgatgg
     2701 cgtaggtcgg cgggaggtcg aacagatcga agtgactgtc gttgagcgtt gccatggtgg
     2761 aggaatgagc aggaacaaga aacgttgaaa agcggtagcg ctaaagaaaa aggcggcacg
     2821 cgccgcctct ttgctgttct tctacgaagc tatacgcgaa acgattcacc gcaaccgcac
     2881 tcgtctttca cattcgggtt gttgaacttg aacccttcgt tcagcccttc gcgcgcgaaa
     2941 tccagctcgg tgccgtcgat ataagcgagg ctcttcggat cgacgatgat cttcacgccg
     3001 gccgactcga acaccttgtc ttccggcgcg agttcgtcca catactcgag cttgtaagcg
     3061 aggcccgagc agccggttgt gcgcacgcca acgcgcaggc caacgccctt gccgcgtcga
     3121 accagatact tctgcacgtg ttgtgctgcc ttgtccgtca acgtgattgc catagtctct
     3181 catcagcagc cgctcgtccg gagtcaatcg tttctccgac cgccacgctg cagccttgct
     3241 ttgaatcgaa aaccagagtg cctgaagtca actgatcggc taactgatca cccaagcgcc
     3301 cttcccgaaa cctgattgcc gcttacctac cgcttaagcc gcgtgttgct tcgcttcaac
     3361 cggagcagct tctgccgtgc ccgcgccatg acgttgcttg tagtcagcaa cggcggcctt
     3421 gattgcgtct tcggccagga ttgaacagtg aatcttcacc ggcggcagtg ccagttcttc
     3481 agcgatgtgc gtattcttga tggtcagcgc ctgatccagc gtcttgccct tcacccactc
     3541 ggtcacgagc gagctggaag caatagccga accgcagccg tatgtcttga acttcgcatc
     3601 ttcgatcacg ccgtccgcgc ccacgcggat ctgcagcttc atcacgtcgc cgcatgccgg
     3661 tgcgccgacc atgccggtgc ccacggtgtc atcgtccttg ccgaacgaac cgacattgcg
     3721 cgggttttcg tagtggtcca gaaccttgtc gctataagcc atgatcaaac tccttgaatt
     3781 cgtatgcgtg tgcgttctaa cttgagcgca aatgagccgc cctcaaagcg gccagccggg
     3841 cgcttaatgc gcagcccact ggatcgacga aatgtcgata ccgtccttat gcatttccca
     3901 aagcggcgac agatcgcgca atttctgaat cttgcccttg agcaagttaa tcacgtaatc
     3961 cacgtcctgc tcggtcgtaa agcggccgac cgtaaaacgg atcgagctat gcgcgagttc
     4021 gtcgttgcgg ccaagcgccc gcagcacata agacggttcc aacgaagccg acgtacatgc
     4081 cgaacccgac gacaccgcca cgtccttcac cgccatgatc agcgattcgc cctcaacaaa
     4141 gttgaagctg atgttgaggt tatgcggcac acggatgtcc atgtcgccgt tcacatacac
     4201 ctcttccatc tccttcaagc cgttcagcaa gcggtcacgc aacatgcgca cgcgctcgtt
     4261 ttccaccgcc atttcttcac gcgcgatccg gaaagcctca cccataccga cgatctgatg
     4321 cgtggccagc gtgcccgaac gcatgccgcg ctcgtgaccg ccgccgtgca tttgcgcttc
     4381 aatgcggata cgcggcttgc gacgcacgaa caacgcgccg atacccttcg gaccgtacgt
     4441 cttgtgcgcc gaaaacgaca tcaggtcgac cttctgcttt tgcagatcga tctcaatctt
     4501 gcccgtcgct tgcgctgcat cgacatggaa tatgatgccc ttcgcacgag tgatctcgcc
     4561 gatcgcggcc acgtcctgaa tcacgccaat ttcgttgttc acgctcatca cggaaaccag
     4621 gatggtgtcc ggacggatgg ctgcctggag cttgtccaag tcgagcaaac cgtcgtcctt
     4681 cacatccagg tacgtgactt cgaaaccttc gcgttcgagt tcacggcagg tatcgagcac
     4741 ggccttgtgc tcggtcttca ccgtgatgat gtgcttgccc ttgctcttat aaaaatgcgc
     4801 cgcgcccttg atggcgaggt tgtccgattc ggtagcaccc gacgtccaga tgatctcgcg
     4861 cgggtcgcaa ttgaccagct tcgcgacgtt ctcgcgcgct tcctcgaccg cccgttccgc
     4921 atcccagcca tattggtggc tacgcgatgc cggattgccg aactgctcgc gcagatacgg
     4981 aatcatcttg tccaccacgc gcggatcgac cggggtcgtc gcgctgtagt ccatgtaaat
     5041 gggcaggtgg ggaatgtcgt tgttcatcag ttgctccggg gatttaactc aattggctcg
     5101 ttcaaggcga gacggccgcg tcattgaata aacgcggcag ccgtcagccg gccaggttga
     5161 aaacggaatt cggtcctttc ggcgccacgc gcactggttc cacgcccgcc gattcggcac
     5221 gccggtcgcg caataccgct ggcgatcctt cgcgtgcacg ctgctggtcg acgagatctt
     5281 tcagcgagac cgagtcgaga tattcgacca tcttctgatt gagcgtggac cagagttcgt
     5341 gggtcatgca gtgaccgtcg tgctgcttgg tgccttcgca ggcgcctttg ccaccacatt
     5401 gcgtggcgtc gataggctcg tccaccgcaa taatgatgtc cgcgaccgtc acgttctcaa
     5461 cacggcgcgc aagattgtag ccaccgcccg gaccgcgcac cgattcgaca atctcgtgcc
     5521 ggcgcaactt cccgaacaac tgttcgagat aggacaacga gatatgctgg cgctggctga
     5581 ttcctgccag cgtcaccggg ccctgctcct ggcgtaaagc caggtcga
//
LOCUS       DATGBK010001627         2583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_88351, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001627 DATGBK010000000
VERSION     DATGBK010001627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88351"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2583)
                     /locus_tag="VKJ77_22850"
     CDS             complement(<1..>2583)
                     /locus_tag="VKJ77_22850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015603170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MG2 domain-containing protein"
                     /protein_id="HMC48174.1"
                     /translation="TKLRVEADTEIRRWMKTVDRFDGFSMSVAQIKQEMPLALSNGIT
                     PVYAQGSTAKDPQIDIRSLSLLAKRPGVETLSVPQADPKSLRPFEVVGIPLPKPGFYV
                     VELASPALGASLLGKQQDMYVRTSVLVTNLGVHLKLGRENSIVWVTALDSGKPVPNAQ
                     VRVTDCNGDQVAVAKTDAQGIATIGKPLASARTCDENSIDDSGFFVSARVDDPKTGPD
                     MAFVRSDWNRGIESWRFNVPTDMSRDQTTRATTVFDRTLLRAGETVSMKHLMREETLK
                     GFAFPSHLPSRVTIRHEGSGQTYHLPLKWAADRSADSTFPIPAAAKLGEYSVTLDDGT
                     TNSDNDSDNSGDNQDSARHMSIETGNFRVEEFRLPVFKGSIGIRDQKTGALVAATTAP
                     LAVQIEYVSGGPASNLPVQVSALMKDTSPAFASQFESFSFAPYKKPTDDGASAPATEG
                     DDDNSNAQEDTSTAKLIADKTALTLDRNGTGTLTLKSLPAVEAPKQLALEATFADPNG
                     EIQTLRGSATLWPAAVAAGIKAGDWVSVGNAVPVQALAVDLQGKPRAGVALEIRGVAR
                     TMTSSRKRMVGGFYAYDNHTETKDLGTLCSGKSDDHGLLSCEAKLKEAGNVDLIAIVK
                     DGDGRVANATTSVWVTREDQLWFGGENTDRIDVLPEKTSYEPGETARFQVRMPFRFAT
                     ALVAVEREGIVETKVVELDGKNPTVELKVQESWGPNVYVSVLAIRGRIHEVPWYSFFT
                     WGWKAPLDWVHAFWYEGRQYEAPTPLVDLSKPAFRYGLGEIKVGTASHKLGVSVTPDA
                     KSYAVRSKAHVKVRVTLPGGKPAPAGTQVALAAVDEALLELMPNQSWNVLDAMLQRRA
                     YGVE"
BASE COUNT          452 a          821 c          763 g          547 t
ORIGIN      
        1 tctccacgcc atacgcccgc cgttgcagca tggcgtcgag cacgttccag ctttgattcg
       61 gcatcagttc gagcagggct tcatcaacgg cggcgagcgc gacttgcgtt ccggccggcg
      121 cgggcttgcc gcccggcagc gtcacgcgga ccttcacatg cgccttcgag cgcacggcat
      181 acgacttcgc atctggcgtg acgctcacgc cgagcttgtg cgaggccgtc cccaccttga
      241 tctcgccgag cccgtaacgg aacgcaggct tcgacaagtc gacaagcggg gtaggcgctt
      301 catattgccg cccttcgtac cagaacgcgt gcacccaatc gagcggcgct ttccagcccc
      361 acgtgaagaa cgaataccac ggcacttcgt gaatccgtcc gcggatcgcg agcacggaga
      421 catacacgtt cggcccccac gactcctgca ctttcagctc gacggtcggg ttcttgccat
      481 cgagttccac gaccttcgtt tccacgatgc cttcacgctc caccgccacc agcgcggtcg
      541 cgaagcggaa cggcatgcgt acctggaagc gggcagtttc gccgggttcg tagcttgttt
      601 tttcaggcag cacgtcgatc cggtccgtgt tttcgccccc gaaccagagt tgatcttcgc
      661 gcgtcaccca gaccgacgtg gttgcgttcg ccacacgacc atcgccatcc ttgacgatag
      721 caatcaggtc gacattgcct gcttctttca gttttgcctc gcaggaaagc aggccgtggt
      781 catcactttt gccgctgcat agcgtgccta ggtccttggt ttccgtgtgg ttatcgtagg
      841 cgtagaaacc gccgaccatg cgcttgcgcg agctggtcat ggtccgcgca acaccgcgga
      901 tttccagggc aacgcccgct cgcggcttgc cctgcaggtc gacagcgagc gcctgcaccg
      961 gcaccgcgtt gccgaccgac acccagtcac ccgccttgat gccggcagca acagccgcgg
     1021 gccagagcgt ggcgctgccg cgcagcgtct ggatctcgcc gttggggtcc gcgaaggtcg
     1081 cttccagcgc gagctgtttc ggcgcttcca ccgccggcag cgacttgagc gtgagggttc
     1141 ccgtgccatt gcggtcgagc gtcagcgcgg ttttatcggc gataagcttg gccgtggacg
     1201 tatcttcctg cgcgttgctg ttgtcgtcgt caccctcggt tgcgggcgcg ctggcgccgt
     1261 catcggtggg ctttttgtac ggcgcaaagc taaacgattc gaactgcgaa gcaaaagccg
     1321 gtgacgtgtc cttcatcaac gccgacactt gcaccggcag attcgatgct ggtccgcccg
     1381 acacatattc aatctgaact gccagcggcg ccgtggtcgc ggccaccagt gcgccggtct
     1441 tttgatcgcg aataccgatc gatcccttga acaccggcag gcggaattcc tccacgcgga
     1501 aattaccggt ttcgatgctc atgtgccgcg ccgaatcctg attgtcaccg ctgttatcgc
     1561 tgtcgttgtc tgagttcgtc gtgccgtcat ccagcgtcac gctgtattcg ccgagcttcg
     1621 cagcggccgg aatcgggaag gtggagtcgg cgctccggtc ggccgcccat ttgagcggca
     1681 gatgataggt ttggccgctg ccctcatgac ggatcgtcac gcgcgatggc aaatgcgagg
     1741 ggaacgcaaa acctttgagc gtttcttcgc gcatcaaatg tttcatcgat accgtttcac
     1801 ccgcgcgcaa caacgtccgg tcgaatacgg ttgtggcgcg cgtggtctgg tcgcggctca
     1861 tatcagtcgg gacattgaag cgccacgatt caatcccgcg attccagtcc gaccgcacga
     1921 acgccatgtc cggcccggtc ttcggatcgt cgacgcgcgc cgagacgaag aagccggaat
     1981 catcgatgct gttttcatcg caagtgcgtg ccgatgccag cggtttgcca atcgtcgcga
     2041 tgccttgtgc atcggttttg gcaacggcga cctgatcgcc gttgcaatcc gtgacacgca
     2101 cttgcgcatt cggcacgggt ttgccgctat cgagcgcggt cacccagacg atgctgtttt
     2161 cgcggccaag ctttaaatgc acgccaaggt tggtgacgag cactgaggtg cgcacataca
     2221 tgtcttgctg tttgccaagc aatgatgcac cgagcgccgg cgatgccagt tcaactacat
     2281 agaaaccggg tttcgggagc ggaatgccga ccacttcaaa aggccgcagt gacttgggat
     2341 cggcctgcgg cacactcagg gtttcaacgc ccggacgctt ggcgagcaac gacagcgagc
     2401 ggatatcgat ttgcggatct ttcgctgtgc tgccttgcgc atagaccggc gtgatgccgt
     2461 tactgagcgc cagcggcatc tcctgcttta tctgcgcgac ggacattgaa aagccgtcga
     2521 agcgatctac ggttttcatc catcgacgga tctcggtgtc ggcctcgacg cgcagtttcg
     2581 tca
//
LOCUS       DATGBK010001628         1729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_319954, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001628 DATGBK010000000
VERSION     DATGBK010001628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319954"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VKJ77_22855"
     CDS             <1..324
                     /locus_tag="VKJ77_22855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HMC48175.1"
                     /translation="ELWLADQAAADTNVRDAMRNEAWRTTLESTWHDEVLPVFDALGE
                     HDAARAYLVDVRDRFENPFLDHRLSDIARNHAEKKQRRFKQAVELAHQLGLNIEQRRL
                     VAALS"
     gene            337..>1729
                     /locus_tag="VKJ77_22860"
     CDS             337..>1729
                     /locus_tag="VKJ77_22860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase family protein"
                     /protein_id="HMC48176.1"
                     /translation="MPIDHTVIRLHPNDDVVIATRQLMSGARITSEVEPLVVSGLIPP
                     GHKIATRDIAKGEAVRRYNQIIGVALDAISRGQHVHVHNLGMADFEREHEFGVDMRET
                     HFVDKPATFMGIRRDDGRVATRNYIGILTSVNCSATVARAIADHFRRDVRPEALADYP
                     NVDGVIALTHGLGCGIDSLGDGIAILRRTLAGYAVHPNFHSVLFIGLGCETNQISGIL
                     GSAGLKDNGAKLRSFTIQDSGGTRKTIERGIAMVKELLADANRVKREPVPASHLVVGL
                     QCGGSDGYSGISANPALGAAVDRLVQHGGTAILSETPEVYGAEHLLTRRAVSREVGEK
                     LLTRIKWWEDYCARNGAAMDNNPSAGNKVGGLTTILEKSLGAVAKGGTTKLVEVYEYA
                     QPIDAKGFVFMDSPGYDPVSATGQVASGANLICFTTGRGSAYGCAPSPSLKLATNTAL
                     WERQEEDIDINCGG"
BASE COUNT          350 a          514 c          537 g          328 t
ORIGIN      
        1 gaactctggc tcgccgatca agccgccgcg gacaccaacg tccgggacgc catgcgcaac
       61 gaagcgtggc gtacgacttt ggaatcgaca tggcacgacg aagtgctgcc cgtcttcgat
      121 gccctcggcg agcacgacgc cgcacgcgcc tatctcgtcg atgtccggga ccgcttcgaa
      181 aatccgtttc tggatcaccg gctctccgac atcgcgcgaa atcacgcaga gaaaaaacaa
      241 cgccgcttca aacaggctgt cgagcttgct catcaactcg gcttgaatat tgaacagcgg
      301 cggcttgtcg ccgcgctgtc ctgaggaata ctgactatgc ctatcgatca caccgttatc
      361 cgcctccatc ccaacgacga tgtcgtgatc gcgacgcgtc aactcatgtc gggcgcgcgc
      421 attacgtctg aagtcgaacc gctggtggtg agcgggctga ttccaccggg ccacaagatc
      481 gccacgcgcg acatagccaa aggtgaagcc gtgcggcgct acaaccagat tatcggcgtg
      541 gcgctggatg ccatctcgcg tggccagcac gttcatgtgc acaacctcgg tatggcggat
      601 ttcgagcgcg aacatgagtt cggcgtcgat atgcgcgaaa cccattttgt cgataaaccc
      661 gctacattca tgggtattcg tcgcgatgac ggccgcgtgg ccacgcgcaa ttacatcggc
      721 atcctgacga gtgtgaactg ctcggccacg gtggcgcggg ctatcgccga tcactttcgg
      781 cgcgatgttc gccctgaagc gctcgccgat tatccgaacg tggatggcgt gatcgcgttg
      841 acgcatggac tcggctgcgg cattgattca ctcggcgacg gcatcgcgat cctgcgtcgc
      901 acccttgcag gttacgccgt ccatccgaac tttcattcgg tgctgttcat cggcctgggc
      961 tgcgagacga atcagatctc ggggatcctc ggctcggccg gtttgaaaga taacggcgcg
     1021 aaactccgca gcttcacgat ccaggacagc ggcggcacgc gcaagacgat cgaacgcggc
     1081 atcgcgatgg tgaaagaact gctcgccgat gccaaccgcg tgaaacgcga acccgtgccg
     1141 gcgtcgcatc tggtggttgg attgcaatgc gggggctcgg acggttattc agggatctcg
     1201 gcgaatccgg cgctgggcgc cgccgtcgac cgcctggtcc agcatggcgg tacggcgatt
     1261 ctctcagaga cgcccgaggt ctacggtgcg gaacatctgc ttacgcgacg cgcggtgagc
     1321 cgggaagtcg gcgaaaaact gctgacacgc atcaagtggt gggaagatta ttgcgcgcga
     1381 aacggtgcgg cgatggacaa caatccatcg gccggaaaca aggtcggtgg cctgacgacg
     1441 attctcgaaa agtcgctggg cgcggtggcg aaaggtggca cgacaaagct cgtggaggtc
     1501 tatgaatacg ctcaacctat cgatgcgaag ggctttgtgt tcatggattc gcccggctac
     1561 gatcccgtct cggcaacagg ccaggttgcg tcgggtgcga atttgatctg cttcacaacc
     1621 gggcgcggct cggcttacgg ctgcgcgccc tcgccttcgc taaagctcgc tacgaacaca
     1681 gcgttgtggg agcggcagga ggaagacatc gatatcaact gcggcgggg
//
LOCUS       DATGBK010001629         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_343151, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001629 DATGBK010000000
VERSION     DATGBK010001629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343151"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1905)
                     /locus_tag="VKJ77_22865"
     CDS             complement(<1..1905)
                     /locus_tag="VKJ77_22865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent exonuclease SbcCD, C subunit-like
                     protein"
                     /protein_id="HMC48177.1"
                     /translation="MLEPFEVAPRIAALIAHFDDLNRAHEAVLKAKRQMDRLTPLTDD
                     CERYAKLLLQVEGLRACREALRYYAAGLKLGLLDKRIAGLTADWERQDGQIRRLEALR
                     DNQRVEESELKRNIAENGGDRLERLDAEIRKKDLDCENRKRKAEHHAGLVRAVGEHPA
                     EDEAAFQTLRQRLSAMSESAQEADVRYQNDLTEHGVSLRQGKQEHDALSAEIDSLKSR
                     RSNIPAEQVAMRVALCKALDLPEAALSFAGELLQVREDERDWEGAAERLLRSFGLSLL
                     VPDTHYAAVVEWVDKTHLRGRLVFFRIRSGVRGELPALQAESLARKLAIKPDSPFYDW
                     LEREVAHRFNVVCCSTQEQFRRETRAITRAGQIKAPGERHEKDDRHRLDDRSRYVLGW
                     TNEAKIAALEVEARLLAAQLSELGSLVAKILADQKACKLRLTVLSKLEEHADFSDLDW
                     NSLAVEVARLRDEKQRLESASDMLAQLTARLGEISAALKSTEDQLDEHKDSRSRTGEK
                     QSIAEELRTQTRAILDDPGYESHTAYFEQLESTWHEVLGKHQLTVESCDNRESDLRGF
                     LQTSIDAEDKKVSRQRDKIIDAMSAYNLAFPLETQEVDVAIESAGEYRTMLDKLKGDD
                     LPRFESRFKDL"
BASE COUNT          337 a          613 c          592 g          459 t
ORIGIN      
        1 caaatccttg aagcgacttt cgaaccgggg caaatcatcg cccttcagct tatccagcat
       61 cgttcggtat tcacccgccg attcaatggc aacgtccact tcctgcgttt ccagcgggaa
      121 tgcgaggtta taggcgctca ttgcgtcgat gatcttgtct cgctggcgcg agactttctt
      181 gtcttcggcg tcgatgctgg tctgaagaaa tccgcgcagg tcgctttcgc ggttatcgca
      241 ggattccacc gtgagttgat gtttgccaag cacctcgtgc caagtcgatt ccagttgctc
      301 gaaataagcc gtgtggcttt cgtagccggg gtcatcgagg atggcgcggg tctgcgtacg
      361 caattcttcc gcgatgcttt gcttttcccc cgttcgggag cgcgaatcct tgtgctcgtc
      421 gagctgatct tccgtgctct tcagcgccgc gctgatttca cccaaccgcg cagtcagttg
      481 cgcgagcatg tctgaggccg actcgagccg ctgcttttca tcgcgtaatc gagccacttc
      541 caccgcgagc gaattccagt cgagatcact gaagtcggca tgctcctcca gcttggaaag
      601 tacagtcagc cgaagtttgc aagccttttg atcagccagg attttggcga caaggctgcc
      661 cagttcactc agttgagcgg ccaacagccg cgcttcgact tcaagtgccg cgatcttggc
      721 ttcgttggtc catccgagta catatcggct gcgatcatcc agacgatgac ggtcgtcctt
      781 ttcatgacgt tcacccggcg ccttgatctg gcccgcacgc gtgatcgccc gcgtttcacg
      841 gcgaaactgt tcctgggtgc tgcagcaaac cacgttgaag cggtgtgcga cctcgcgctc
      901 gagccagtcg tagaagggcg aatccggctt gatcgccagc ttccgggcga gggactcggc
      961 ctgcagagcg ggcaactcgc cccgaacgcc cgaccggatc cggaagaaca cgaggcgtcc
     1021 ccggaggtgt gttttgtcga cccattccac gaccgccgcg taatgcgtgt cagggaccag
     1081 caatgacagg ccgaagctgc gcaacagccg ttcggcggcg ccttcccaat cgcgctcgtc
     1141 ttcgcgtacc tgaagcagtt cgccagcgaa cgagagagcc gcctcaggca gatcgagcgc
     1201 cttgcacaat gccacgcgca tggcgacttg ttcggcggga atgttgcttc ggcggctttt
     1261 caggctgtcg atttccgccg acaacgcgtc gtgctcctgt tttccctggc gcaggctgac
     1321 gccgtgctcg gtcagatcgt tctgatagcg gacgtccgct tcctgagctg actcggacat
     1381 ggcggacagg cgttggcgca gcgtctggaa cgcagcttcg tcttcagcgg gatgttcgcc
     1441 gacggcacgc accagcccgg cgtgatgctc cgccttgcgt ttgcggtttt cgcaatcgag
     1501 gtctttcttg cgtatttcgg cgtcaagccg ctccaggcgg tcgccgccgt tctcggcgat
     1561 gttgcgcttg agttcgctct cttccacgcg ctggttgtca cgcaaggctt cgaggcgcct
     1621 gatctggccg tcttgccttt cccagtccgc ggtcagcccc gcgatgcgct tatcgagcaa
     1681 gccaagtttc aggcctgcgg cgtagtagcg gagcgcttca cggcatgcgc gaagtccttc
     1741 cacctgaagc agcagcttgg cgtatcgctc gcagtcgtcg gtgagtggcg tgaggcggtc
     1801 catttgccgc ttggctttga gcaccgcttc gtgcgcgcgg ttcaggtcgt cgaaatgggc
     1861 aatcaacgcg gcaatgcggg gcgcgacctc gaaaggctcg agcatatggc tgcgtacgaa
     1921 gtcagtgagg ttccccacgg atttcatcga tacggtctga tggaacagtt ccagcgcctg
     1981 ttcattttca atcccgaagc g
//
LOCUS       DATGBK010001630         1889 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_274359, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001630 DATGBK010000000
VERSION     DATGBK010001630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274359"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..861
                     /locus_tag="VKJ77_22870"
     CDS             <1..861
                     /locus_tag="VKJ77_22870"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HMC48178.1"
                     /translation="GEVANYVASQRGPSARQSNDLHLQHIMFKVPDNASQADIAAIQA
                     KAEGVLKDAQSGSDFTKLAKNNTQDTDAAKGGDLGFRTQASLPADIVSAVATLRPNEV
                     NPQLIRTAGGFEIIKLVDRRIGQGQAADAPKLVQTHVRHILLRVADGVSESAARQKLL
                     EIKGDVEKGGDFANFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLKDNQVSDP
                     VRSEYGYHLIQVLGRRDAEGSVQQQLDTARQAIGQRKAEQAYSDWLRELRDTAYVQYK
                     GVAAQQALNQ"
     gene            873..1862
                     /gene="pdxA"
                     /locus_tag="VKJ77_22875"
     CDS             873..1862
                     /gene="pdxA"
                     /locus_tag="VKJ77_22875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008342823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HMC48179.1"
                     /translation="MNAASPMSPLSIAITTGEPAGVGPELTVAALAEAAQRWPSVRFT
                     VLGDRELMAERAGSSPWLSTGADIEIEHHALGVPVIAGKLNAANGRYVLRLLDAAIDG
                     AVSGRFDAIVTAPLQKSTINDAGVPFTGHTEYLAERTHTPRVVMMLAGMGDRPLRVAL
                     ATTHLPLKDVSAALTVDGIVETLGIIDRDLKALFGLQKPRILVTGLNPHAGENGYLGR
                     EEIDVITPALLQARALGIDAPGPYPADTLFQPRYLKDADCVLAMFHDQGLPVLKFATF
                     GEGINITLGLPIIRTSVDHGTALDLAGTGLADPGSLIVAIDTAVAMARHRRAA"
BASE COUNT          356 a          587 c          604 g          342 t
ORIGIN      
        1 ggcgaagtag ccaactacgt cgccagccag cgtgggccga gcgcccgcca gtccaacgac
       61 ctgcatctcc agcacatcat gttcaaggtg ccggacaacg cgtcgcaggc tgacattgcc
      121 gccatccagg cgaaggccga aggcgtgtta aaagatgcgc aaagcggatc ggactttacc
      181 aagctggcaa agaacaatac gcaggatacc gacgcggcca agggcggcga tctcggtttc
      241 cgcacgcagg cttcgttgcc ggctgacatt gtgagcgcgg ttgcaacgct ccgtccgaat
      301 gaggtgaatc cgcaactgat tcgcaccgcc ggcggttttg agatcatcaa gcttgtggac
      361 cgccggatag gccaaggcca ggcggccgat gccccgaagc tcgtccaaac ccacgttcgg
      421 cacattttgc tgcgcgtagc tgacggcgtg tccgagtcgg ccgctcgtca gaagctgctg
      481 gaaatcaagg gcgacgttga gaagggcggc gatttcgcca acttcgcgcg gacctattcg
      541 caggacggtt cggcgtcgca aggcggggat ctcggctgga tcagcccggg cgaaaccgtg
      601 ccggaattcg agcgcgccat gaacaacctc aaggacaacc aggtcagcga cccggttcgc
      661 agcgagtacg gttatcactt gatccaggtg ctgggacgcc gcgatgcaga aggctcggtc
      721 cagcagcaac tggatacggc acgtcaggcg atcggtcagc gcaaggccga gcaagcatat
      781 tccgactggc tgcgtgaact gcgcgacacc gcctatgtgc agtacaaggg tgttgcggct
      841 cagcaagcgc tgaaccagta aggcttggcg agatgaacgc agcaagccct atgtcgccat
      901 tgtcgatcgc cattaccacc ggggagccgg cgggcgtggg gcctgagttg acggtggcgg
      961 cgctggctga agcggcgcag cgctggccgt cggtgcggtt taccgtgctc ggcgaccgtg
     1021 agctgatggc tgagcgggct ggttcatcgc cgtggctttc aaccggcgcg gacatcgaga
     1081 tcgagcatca cgcgctgggt gttcccgtca tcgcgggcaa gctgaatgcc gctaacgggc
     1141 gttacgtgct ccgcttgctc gatgcagcta tcgacggggc ggttagcggt cgtttcgacg
     1201 ctatcgtcac cgcgccgctg cagaaaagca ccatcaacga cgccggcgtt ccgttcaccg
     1261 gccacaccga atatctcgct gaacgcaccc atacgccgcg cgtcgtcatg atgctcgcgg
     1321 gcatgggcga ccggccgctg cgcgtcgcac tcgctaccac gcatctgccg ctgaaggacg
     1381 tgtcggcggc gttgacggtg gatggcattg tcgaaacgct gggcattatc gatcgcgatc
     1441 tgaaagcgct gttcggtctg cagaagccgc gcatcctggt gaccggactc aacccgcacg
     1501 cgggcgaaaa cggttacctg ggccgcgagg aaatcgatgt catcacaccc gcgctgctgc
     1561 aagcgcgcgc gctgggtatc gatgctcccg gtccctatcc ggcggatacg ttgttccagc
     1621 cgcgttatct caaggacgcc gactgcgtgc tcgccatgtt ccacgaccag ggtttgccgg
     1681 tcctgaaatt cgcgacgttc ggcgaaggca tcaacatcac gcttgggctg ccgatcatcc
     1741 gcacgtccgt cgatcatggc accgcgctcg atctggccgg caccggcctc gcggatccgg
     1801 gcagcctgat cgttgctatc gatacagccg ttgccatggc gcgccatcgt cgcgcagcct
     1861 gactcccttt cattgcggtt ttaatcggt
//
LOCUS       DATGBK010001631         2808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_111843, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001631 DATGBK010000000
VERSION     DATGBK010001631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111843"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..690)
                     /locus_tag="VKJ77_22880"
     CDS             complement(<1..690)
                     /locus_tag="VKJ77_22880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48180.1"
                     /translation="MLNPVWLNTFATVAASHSFTDAGRQLRLTQSSVSEHIRRLEEHV
                     GRRLLVRDTHSLALTADGEAMLVHARMILEAMTHAELQFRSPRLRGRVRLGSSDDVAL
                     GPLPSVLAAFRRTHPDVELEITIGMTGRLYEHLEAGTIDLMIGKRRIGDARGIPLFSG
                     QLEWLGLTGTEVDLEQPLPLILVAEPSVTRAVVLDSLAAVGARWQVVCTSSSYAGCIA
                     AARGGLGLTVRS"
     gene            816..2201
                     /locus_tag="VKJ77_22885"
     CDS             816..2201
                     /locus_tag="VKJ77_22885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HMC48181.1"
                     /translation="MTSKNSHTALLWIVAVGFFMQALDTTIVNTALPSIARSLHAQPL
                     AMQPIVVAYTLTMALLTPASGWLADRFGTRRVYFVAILLFVIGSMCCANAQSLNQLIV
                     ARVIQGIGGSMLLPIGRLAVLRSVTGEAYVSALAVISIAGQVGPILGPTLGGWFVESF
                     TWHWIFLINVPIGAVGLFAVHRFLPNDAITEATPFDFIGCALLSLCMVAFSMALDSPA
                     HTHKLLVSGGLFVLSAFAALAYIPYAKRRSNPLFKLSLFSEPNFSVGLIGNLLCRIGS
                     SAVPFLLPLLMQLQLGYTPLHSGLMMLPAAFAGTVAKGWISPLVKRYGYDNFLLWNTI
                     LVGASIVGFASFSVSTPLAIEIAILAVFGACNSMQFAAMNSVTLKGLSIKDAGSGNSL
                     FSMVQMLAIGLGVSIGGGLVSVFSANLGSAALAFRIAFVCVGLVTLASAIVFRFLDAE
                     PTRPAPQAAAT"
     gene            2289..>2808
                     /locus_tag="VKJ77_22890"
     CDS             2289..>2808
                     /locus_tag="VKJ77_22890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC48182.1"
                     /translation="MQYRKFGRTGLNVSRLCLGTMTFGLQTEEDVSRSIMDRAAEAGV
                     NFIDTADVYPLGGTEEVAGRTEEIVGRWLKDAPGRRSQFILATKAVGKMGPAAWDQGA
                     SRKHLLDAIDASLKRLNTDYVDLYQLHSDDLNTPLDETLEALDTIVRHGKARYVGVSN
                     FLAYRLATALGRS"
BASE COUNT          484 a          876 c          845 g          603 t
ORIGIN      
        1 tgaccgcacg gtgagcccca gtccaccgcg cgcagccgcg atgcaccctg catacgaact
       61 gctcgtgcag accacctgcc agcgcgcgcc caccgcggcc agcgaatcga gcaccacggc
      121 gcgcgtcacg ctcggctcgg cgacgaggat caacggcagc ggctgctcaa ggtccacctc
      181 ggtgcccgtc agcccaagcc attcgagctg tccggaaaac agcggaatgc cgcgtgcgtc
      241 cccgatgcgc cgtttgccga tcatcaaatc gatcgtcccc gcttccaggt gctcgtaaag
      301 ccgccccgtc atgccgatgg taatctccag ttcaacatcc ggatgagtcc tgcgaaatgc
      361 cgcaagtacg ctgggcaagg ggccgagcgc gacgtcgtcg gaggaaccca ggcgcacgcg
      421 gcccctgagg cgcggcgagc ggaactgcaa ctcggcgtgg gtcatcgctt ccagaatcat
      481 gcgagcatgg accagcatgg cttcgccatc ggcggtgagc gcgagcgaat gggtatcacg
      541 cacgagcaac cggcggccga catgttcctc cagccgccgg atatgctcgc tcacgctgga
      601 ttgcgtgagc cggagctggc ggccggcgtc ggtaaaacta tgcgacgcgg ccaccgtcgc
      661 gaacgtgttc agccagactg gattgagcat gattcattgt gatcggattt gtcgatgata
      721 gtcaatgtgg ctagcggggt tcccgattgc caatttgagt cttaaaatcg tcacatcgcg
      781 ttcaaacctg cgcgacattg ttcctgctgc aatcgatgac ttcaaagaac tcacacacgg
      841 cgcttttgtg gatcgtggct gtcggctttt tcatgcaagc cctcgacacg accatcgtca
      901 acaccgccct gccctccatt gcgcgcagcc tgcacgcgca accgctcgcg atgcaaccta
      961 ttgtcgtcgc ctacacgctg accatggcgc tcctcacgcc cgcatccggc tggctcgctg
     1021 accgcttcgg cacccggcgc gtctacttcg tcgccatcct gttgttcgtc attggctcga
     1081 tgtgctgcgc aaacgcgcaa tcgttgaatc aactgatcgt ggcgcgcgtg atccagggga
     1141 ttggcggctc gatgctgctg cccatcggcc ggctggccgt gctgcgcagc gtgacgggcg
     1201 aggcctatgt ctccgcgctg gcggtcattt caattgccgg ccaggtcggc ccgattctcg
     1261 gaccgacgct tggcggctgg ttcgtcgaat cgtttacgtg gcactggatt ttcctgatca
     1321 acgtgcctat tggcgcagtg ggcttgttcg ccgtgcatcg ttttcttccc aacgatgcca
     1381 ttacggaggc gactcccttt gactttatcg gctgcgcgtt gctgtcactc tgcatggtcg
     1441 cgttttcaat ggcgctcgac agtcccgcgc acacgcacaa actgctggtg tcgggcggac
     1501 tgttcgtgct gtccgcgttc gctgcgcttg cttacattcc gtatgcaaaa cgccgctcca
     1561 atccgctttt caagctgtcc ttgttcagcg agccgaactt cagcgtgggc ttgatcggca
     1621 acctgctgtg ccggatcgga tcgagcgctg tgccgtttct cctgccgctg ctgatgcaat
     1681 tgcaactcgg ttatacgccg ctgcactcgg gcttgatgat gttacccgcc gcgttcgccg
     1741 gcacagttgc aaagggctgg atctcaccgc tcgtgaagcg ctatggctac gataacttcc
     1801 tgctgtggaa caccattctt gtcggggcgt cgatagtcgg cttcgcttcg ttttcggtga
     1861 gcacgccgct cgcgatcgag atcgcgatcc tcgccgtatt cggcgcgtgc aattccatgc
     1921 agttcgccgc gatgaacagc gtcacgctca agggtttgtc gatcaaggac gcgggcagcg
     1981 gcaacagtct cttttcgatg gtccagatgc tggccattgg cctcggggtc tcgattggcg
     2041 gcggcctggt gtcggtgttc tcggcgaacc tcggctcggc ggcgcttgcg ttccggatcg
     2101 cgtttgtatg cgtgggcctg gtgacgctgg catcggccat tgtgttccgt ttcctcgatg
     2161 ccgagcccac gcgcccggcg ccgcaggctg cagcaaccta atagtacgca ccagcgcaaa
     2221 tgcaggctcc ggcctgaacg tttaagctgg ctggatattc aacacgctac acgcccaagg
     2281 agtttgccat gcagtatcgt aaatttggcc gtaccggcct gaacgtttcg cgtttgtgcc
     2341 tgggcacgat gaccttcggt ttgcagactg aagaggatgt gtcgcgcagc atcatggatc
     2401 gtgcggctga agccggtgtc aatttcatcg ataccgcaga cgtctatccg ctcggtggca
     2461 cggaagaggt ggccgggcgc acggaggaga ttgtcgggcg ctggttgaaa gatgcgcctg
     2521 ggcgccgcag ccagttcatc ctggcgacca aagcggtcgg caagatgggg ccggcggcgt
     2581 gggatcaggg cgcatcgcgc aagcatttgc tggacgctat cgatgcatcg cttaaacggc
     2641 tcaataccga ttacgtcgac ctgtaccaac tgcactccga cgatctcaac acgccgctcg
     2701 acgaaaccct ggaagcactc gatacgatcg tgcgccacgg caaggcgcgt tacgtggggg
     2761 tatcgaattt cctggcatac cggcttgcca ctgcgcttgg ccgctctg
//
LOCUS       DATGBK010001632         1863 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_250304, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001632 DATGBK010000000
VERSION     DATGBK010001632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250304"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /gene="msrB"
                     /locus_tag="VKJ77_22895"
     CDS             complement(<1..405)
                     /gene="msrB"
                     /locus_tag="VKJ77_22895"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HMC48183.1"
                     /translation="MNRDDLTKATIDPVAPLQKDDAEYRKELTDIQYQVTRHAATERP
                     FTGEYWDHTERGIYDCVCCGTPLFESATKFDAGCGWPSYFKPINGEVIKEKTDHAHGM
                     LRIEVQCKNCGAHLGHVFEDGPAPTGLRYCINS"
     gene            complement(482..>1863)
                     /locus_tag="VKJ77_22900"
     CDS             complement(482..>1863)
                     /locus_tag="VKJ77_22900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HMC48184.1"
                     /translation="QLGFNTADAQDPAFAELFAGNPTREWPTEKLPYASVYSGHQFGV
                     WAGQLGDGRAIGLGEIEHDGKRLELQLKGAGRTPYSRMGDGRAVLRSSIREYLCSEAM
                     HHLGIPTTRALCVIGSDQPVRRETMETAAVVTRVAPSFVRFGHFEHFYTNDRLDELKK
                     LTDHVIDRFYPQCREADDPALALLQEVMNRTADLMADWQAVGFCHGVMNTDNMSILGL
                     TIDYGPFGFIDGFNANHICNHSDSQGRYAYKMQQQIGYWNLFCLAQALVPLFGPQYDS
                     DTRNTKVIEDAQRVLEGFKDRFAPALERRMRAKLGLVETREGDDKLASRLFEVMNANR
                     ADFTLTFRNLAKMRKTDASGDAPVRDLFLDRAAFDVWANDYRLRLSEETQGDEARASA
                     MNGVNPKYVLRNHLAENVIRLAKEKDFSEVERLAKVLRHPFDEQPEFEAYAGLPPDWA
                     SDLEVSCSS"
BASE COUNT          349 a          566 c          549 g          399 t
ORIGIN      
        1 cgagttgatg cagtagcgca gaccggtcgg ggcgggaccg tcctcgaaaa cgtgacccag
       61 atgcgcgccg cagttcttgc actggacctc gatgcgcagc atgccgtgcg catgatccgt
      121 cttttccttg atgacttcgc cgttgatcgg cttgaagtaa ctcggccagc cgcaaccggc
      181 atcgaatttc gtagccgatt cgaacagcgg cgtgccgcag cacacgcagt catagatgcc
      241 gcgctccgtg tgatcccagt attcgccggt gaacggccgt tcggtggcgg cgtggcgcgt
      301 cacctggtac tggatatcgg tcaattcctt tcggtactcg gcgtcgtcct tctgcagcgg
      361 agcaacgggg tcgatggttg ctttcgtgag atcgtctcgg ttcatggttt tctatctcca
      421 gatctttggc ggagcctgac aaggaatgcg gctcgctcgg ctcatgtatt tgggggctat
      481 ttcaggaaga gcaactgact tccaggtcgc tcgcccagtc gggcggcaaa ccggcatacg
      541 cttcaaactc gggttgttca tcgaagggat ggcgcagcac tttcgccagc ctctcgacct
      601 cggaaaaatc cttctctttc gccagccgga tgacattttc ggccagatgg ttgcgcaaca
      661 catattttgg attcacgccg ttcatcgcgc ttgcccgcgc ttcgtcgccc tgtgtttcct
      721 ccgacaaacg cagccggtag tcgttcgccc agacatcgaa agcggcgcga tcgaggaata
      781 ggtcgcgcac cggcgcgtcg ccggaagcat cggtcttgcg cattttcgcg aggtttcgga
      841 acgtcagcgt gaaatcggcg cgattggcgt tcatcacttc gaagaggcga ctggcgagtt
      901 tatcgtcgcc ttcgcgagtc tcaaccagac cgagttttgc acgcatgcgg cgctcgagcg
      961 caggcgcaaa acggtccttg aaaccctcca gcacccgctg cgcgtcttca atcaccttgg
     1021 tgttgcgagt gtcgctgtcg tattgcggac cgaacagcgg caccagcgct tgagcgaggc
     1081 aaaacaggtt ccagtagcca atctgctgct gcattttata cgcgtaccga ccctgcgaat
     1141 ccgagtgatt gcagatgtga ttcgcattga atccatcgat aaagccaaac gggccgtaat
     1201 cgatcgtcag cccgagaatc gacatgttgt ccgtgttcat cacgccatgg caaaacccga
     1261 cggcctgcca gtccgccatc aggtcggcgg tacggttcat gacttcctgc aagagcgcca
     1321 acgcgggatc gtcggcttcg cggcactgcg ggtagaaccg gtcgatcacg tgatcggtga
     1381 gcttcttcaa ttcatcgagc cgatcgttcg tgtagaagtg ctcgaagtga ccaaagcgca
     1441 cgaaactcgg cgcgacccgt gtcacaacgg cggccgtttc catggtttcg cggcgcaccg
     1501 gctgatccga tccgatgacg cacaacgccc gcgtggtcgg aatgccgaga tggtgcatgg
     1561 cttcggagca caaatattcg cgtatcgatg accgcaacac cgcgcgtccg tcgcccatgc
     1621 gcgaatacgg cgtgcgtccc gcgcctttca gctgcagctc gagtcgcttg ccgtcgtgtt
     1681 caatctcacc caggccgatc gcgcggccgt cgccgagctg gccggcccac acgccgaact
     1741 ggtgccccga atacaccgat gcatacggca acttctccgt cggccattcg cgggtgggat
     1801 tgcccgcgaa gagttcggcg aacgcgggat cttgcgcgtc agcggtgttg aaacccagtt
     1861 gcg
//
LOCUS       DATGBK010001633         2237 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_134750, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001633 DATGBK010000000
VERSION     DATGBK010001633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134750"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..154)
                     /locus_tag="VKJ77_22905"
     CDS             complement(<1..154)
                     /locus_tag="VKJ77_22905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48185.1"
                     /translation="MTLLRVSHLAKSFGGVKAVDDVSFDLNAGQLLALIGPNGAGKST
                     CFNMLNG"
     gene            complement(151..2073)
                     /locus_tag="VKJ77_22910"
     CDS             complement(151..2073)
                     /locus_tag="VKJ77_22910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48186.1"
                     /translation="MLSNLAVQLINGLADACAMFLVASGLSLIFGVTRIVNFAHGSFY
                     MLGVYVAYSIASRFGSTVAGFWLSMLAAALVVAVLGALVEMVVLRRIYQAPELFHLLA
                     TFALVLIFRDAALYIWGPEDLFGPRAPLLGGAVNLLGHALPTYDIALIVIGPVVLGIL
                     WFGLNKTRWGTLVRAATGDREMLGALGINQAWLFTGVFFIGAFLAGLGGALQVPRMSA
                     NLSLDIDTIGNAFVVVVVGGMGSIPGAFVAALLIAEIKALCIGIGDVTIGGVVFSLSK
                     FTLVAEFVVMAIVLVVRPWGLLGRAQAAVRTMAAAETPLRPADTRLKIFAGVVLAVLV
                     LAPLLSGVFPYMPVLLVEILIAVLFATSLHFIMGPGGMHSFGHAAYFGLGAYGAALFL
                     KVLNLPMEVALVLGPLLAVVGALVFGWFCVRLSGVYLAMLTLAFAQIVWSIVFQWDAV
                     TGGSNGILNLWPSTWLSSTVAYYYVTLVFAVLGVWLLRRMLFSPLGYAMRASRDSTLR
                     AEAIGIDVKRVQWVAFIIASLFCGLAGSLYAFSKGSISPEVISVGRSVDGLVMVLLGG
                     LQTLTGPIVGAAVFTWLQDTVARQTDYWEALLGAAILVLVIAFPQGIVGFVRDKLGSH
                     KNSDNAVASQPAKEAL"
BASE COUNT          572 a          721 c          622 g          322 t
ORIGIN      
        1 gcccgttgag catgttgaag caggtcgact tgccggcacc gttcggacca atcagcgcga
       61 gcaactgccc cgcgttcaag tcgaaggaaa catcgtcgac agctttgaca ccgccgaacg
      121 acttcgcaag atgagaaacg cgaagaaggg tcacagggcc tccttggcgg gttgcgaggc
      181 cacggcgtta tcggaattct tgtgcgaccc gagcttgtcc cgcacgaacc ccacgatccc
      241 ctgcggaaac gcaatcacca gcaccaggat cgctgcgcct agcagcgcct cccagtagtc
      301 ggtctgacgc gctaccgtat cttgcagcca cgtgaacacc gccgctccga caatcgggcc
      361 ggtgagcgtc tgcaagccac ccagcagcac catgacgagg ccgtcgaccg agcgcccgac
      421 gctgatcacc tccggcgaga tcgacccctt ggagaacgca tacagcgatc ccgcgaggcc
      481 gcagaacaat gacgcgatga taaaagcgac ccactgcacg cgcttcacat cgataccaat
      541 ggcttcagca cgcagggtgg aatcgcgcga ggctcgcatg gcataaccga gcggcgagaa
      601 caacattcgc cgcaagagcc agacacccaa gaccgcgaac accaaggtca cgtagtagta
      661 cgccaccgtc gagctgagcc aggtcgacgg ccagaggtta agaatgccgt tgctgccgcc
      721 ggtcaccgca tcccactgga acacgatcga ccagacgatt tgcgcgaaag ccagtgtgag
      781 catcgcgaga tagacgcccg acaaacgcac gcagaaccat ccgaacacca atgccccgac
      841 aacggcaagc agcgggccga gcacgagcgc aacttccatc ggcaggttca ggaccttcag
      901 gaacaacgct gcgccatagg cgccgaggcc aaaatatgcg gcatgaccga acgaatgcat
      961 gccgcccgga cccatgatga aatgcaggct cgttgcaaac aaaaccgcga tcaggatctc
     1021 gacaagcagc acgggcatgt aggggaacac gcctgaaagc agcggtgcga gcacaagcac
     1081 ggcaaggacg acaccggcga atatcttcaa ccgggtatcg gcgggacgca gcggtgtttc
     1141 agcggcggcc atggtgcgaa cagcggcctg tgcgcgaccg agcagacccc acggccgcac
     1201 cacgagcacg atcgccatca ccacgaattc agccacgagc gtgaacttgc tcagcgaaaa
     1261 caccaccccg ccaatggtta cgtcgcctat gccaatgcat agcgccttga tctccgcaat
     1321 cagcaatgcg gctacaaacg cgccggggat cgagcccatt ccgccgacca ccaccacgac
     1381 gaacgcattg ccgatcgtat cgatatcaag cgacagattc gcggacatcc gcggcacctg
     1441 aagcgcaccg ccaagacccg cgagaaatgc gccgataaaa aacacgcccg taaataacca
     1501 ggcctggttg ataccgagcg caccgagcat ttcccggtca ccggtcgccg cgcgcacgag
     1561 ggtgccccag cgcgttttat tcagaccgaa ccaaaggata cccagcacca cgggaccgat
     1621 cacgatcaat gcaatgtcat aggtgggcag tgcgtggccg agcagattga ctgcgccgcc
     1681 gagcagcgga gcgcgcggcc cgaacaggtc ttccgggccc cagatgtaca gcgcggcgtc
     1741 ccgaaagatc agcaccagcg caaaggttgc caacaggtgg aataactcgg gcgcctgata
     1801 gatccgccgg agcacgacca tttccaccag cgcaccgagc acggcgacga cgagcgctgc
     1861 tgcaagcatc gaaagccaga aaccggcgac ggtcgaacca aagcggctgg cgatgctata
     1921 ggccacgtac accccaagca tgtagaacga gccgtgcgcg aagttgacga ttcgcgtcac
     1981 gccgaagatc aacgacaaac cggacgcgac aagaaacatg gcgcaggcgt ccgctagtcc
     2041 gttgatgagt tgcacagcca gattcgaaag catcgatgcc tctatagctc gggattcatc
     2101 aaggtgttca cgccggcaag gctgcttttt caagcaccga cttcgcctgc cgatacaaat
     2161 gtacacactc taattctagt cttctatgca atgaccatgc ccactttata actagagact
     2221 tgtactaggt atcatgg
//
LOCUS       DATGBK010001634         1572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_204622, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001634 DATGBK010000000
VERSION     DATGBK010001634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204622"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            9..176
                     /locus_tag="VKJ77_22915"
     CDS             9..176
                     /locus_tag="VKJ77_22915"
                     /inference="COORDINATES: protein motif:HMM:NF015823.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HMC48187.1"
                     /translation="MRSPKGGENVSGRSVVHETAGGPGYDALVKAHSRALASVASDIA
                     VAMHSMTGKQR"
     gene            317..1507
                     /locus_tag="VKJ77_22920"
     CDS             317..1507
                     /locus_tag="VKJ77_22920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019938214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HMC48188.1"
                     /translation="MNDFARLPGHRFLHSPGPSRVPDEVLHAMSRQPMELDDPRLDRC
                     IAACEAGLKRVLQTEQADVFLYAANGHGAWEAVIANLVAPGQAVLVAGTGHFSESWAV
                     QAEAMGGRVIRTPWVAGRPIDPADIEAVLREDVKREIVAVFIVHTDTASGITNDLPAM
                     RAAIDRADHPALLVVDVVASLAAAPFAMDATRINVVLGASQKALMVPPGLAFVAVDAA
                     AIEVSRRNATPRFYWDWERRKSPLSYRKFCGTPPQSLIAGLEASLGLIFREGLPQVLE
                     RHRRIAQAVQAAVQCWSEAGALRFFCEVPEARSVSVTTIAVSEGIDPEAIRSVARERF
                     EVAIAGGLGPLAGRAFRIGHLGDINPAMILGCLGGVEAAMTVQGVPFGRGGVERAIAR
                     LASD"
BASE COUNT          278 a          469 c          534 g          291 t
ORIGIN      
        1 tctggtcggt gcgttcgccg aagggcggtg agaacgtgag cggacgcagt gttgtacacg
       61 agaccgcagg cggccctggt tacgacgccc tggtcaaagc acacagccga gccctcgcat
      121 ccgtggcgag cgatatcgcc gtggcgatgc attcgatgac ggggaagcaa cgttaggtcc
      181 gaactggtgg tgaaatggca agccctgtag aatatttcgg ccaacaacta gccaggcttg
      241 caatgaaact gactgacgac aaagctcaag cgcgctcgaa ctccagtggc aatcacccat
      301 ttcgaatgct cctcgcatga acgacttcgc ccgtttgcct ggccatcgct ttctgcattc
      361 gccgggacct agccgcgtgc cggatgaagt cctgcacgca atgagccgtc agcccatgga
      421 gctcgatgac ccgcgactgg atcgctgtat tgccgcttgt gaagcgggac tgaagcgcgt
      481 gctgcagaca gagcaagcgg acgtcttcct ctatgccgcg aacggccatg gcgcgtggga
      541 ggcagtcatc gccaacctgg ttgcgccggg tcaggcggtg ctggtggcag gcaccggtca
      601 cttctcggag tcgtgggcgg tgcaggccga ggcaatgggc ggccgtgtga tccgtacccc
      661 ctgggtcgca ggccgtccaa tcgatccagc ggatatcgaa gccgtgctgc gggaggatgt
      721 gaaacgcgag atcgtcgcgg tctttatcgt tcatacggac accgccagcg gcatcaccaa
      781 cgatctgccc gccatgcggg cggcgatcga ccgggccgat cacccggcgc tgctcgtggt
      841 cgacgtggtt gcatcgcttg cagccgcgcc gttcgccatg gatgcaacgc gcatcaacgt
      901 ggttctcggg gccagtcaga aggcgttgat ggtgccgccg ggactcgcgt tcgtcgccgt
      961 cgacgcagcg gccatagaag tctcgcgccg caatgccacg ccgcgtttct actgggactg
     1021 ggagcggcgc aaaagtccgc tgtcgtaccg caagttttgc ggcacgccgc cgcaaagcct
     1081 gatcgccggg ctggaggcat cgctcgggct gattttccgc gaaggcctgc ctcaagtgct
     1141 ggaacgccat aggcgcatcg cgcaagcggt gcaagctgcg gtgcaatgct ggagcgaagc
     1201 gggggcgttg cgctttttct gcgaggtgcc tgaggcgcgg tcggtgtcgg tgacgaccat
     1261 cgcggtgagc gagggcatcg atccggaagc tatccgcagc gtcgcgcgcg agcgcttcga
     1321 agttgcgatt gccggcggtc tcgggccact tgcgggccgc gcatttcgca tcgggcatct
     1381 cggcgatatt aaccccgcaa tgatccttgg atgcctcggc ggcgtcgaag ccgcgatgac
     1441 cgtgcagggt gttccgttcg gacgcggtgg cgtggagcgt gcgatcgcac ggctggcgtc
     1501 ggactgaaga ccggggaggt cttcttccgg gtactcggaa tacgattagt gacccgaaga
     1561 agatcatcgc cc
//
LOCUS       DATGBK010001635         3402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_274415, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001635 DATGBK010000000
VERSION     DATGBK010001635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3402
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274415"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..974)
                     /locus_tag="VKJ77_22925"
     CDS             complement(<1..974)
                     /locus_tag="VKJ77_22925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341848.1"
                     /note="This protein performs the mismatch recognition step
                     during the DNA repair process; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HMC48189.1"
                     /translation="MMQQYLRIKGEHPGTLVFYRMGDFYELFFDDAVKASRLLDLTLT
                     QRGASGGNPIKMAGIPHHSCEQYLAKLVKLGESVAICEQIGDPATSKGPVERKVVRVV
                     TPGTLTDAALLSDKNDVFLLALCPAHNRRGVVTSVGLAWLNLASGALRLAEVAPDQLS
                     AALERIRPAETLVADSFSATNAPFEVPNVGATTRAPAWHFDIDSGTQRLREQLDVASL
                     DGFGAHSLTCACGAAGALLLYAAATQGQQLRHVRSLKVEYESEYIGLDPATRRNLELT
                     ETLRGTESPTLCSLLDTCCTTMGSRLLRHWLHHPPRDFTIAQSRQRAIG"
     gene            complement(1283..1651)
                     /locus_tag="VKJ77_22930"
     CDS             complement(1283..1651)
                     /locus_tag="VKJ77_22930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008341847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HMC48190.1"
                     /translation="MGLFTRSTLDSNINGAAKVGHRAVQGGSAAVDTASTQLRGLLDE
                     LDSSIRDAKDIDVDKLRKDLQAKLKTARAQFDGSSSAIAGRLNDAAGYADEFVHDKPW
                     HTLGAVAGLALLVGFLAGRS"
     gene            complement(1804..3102)
                     /gene="lplT"
                     /locus_tag="VKJ77_22935"
     CDS             complement(1804..3102)
                     /gene="lplT"
                     /locus_tag="VKJ77_22935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HMC48191.1"
                     /translation="MKKGFYTIIAAQFVSSLADNALLIAAIAMLSVMHSASWVTPLLQ
                     IFFTVSYVLLAPFVGAFADSIQKRYVMFVSNALKAGGCALMILGVHPMIAYGVVGLGA
                     AAYSPAKYGILTELLPPEKLIPANAWLESATVGSTILGTVIGGALVSQYVQHFVSGAH
                     LILIRSAADAAMFAVMVVYAAAAVINIGIPDTGARYPNRLKEPSKLVGDFIHAFKVLW
                     GDKLAQIALWVTTLLWGAAVTLQLLVLKWAAANLGLSLSKAAVLQGVTGLGIAIGASA
                     AAAWVPLRSSLKVLPIGVVTGAVAVGMAFYNKDLFPAGSGVHIGPLFAPLYILGAYPL
                     MILLGALSGFFIVPMNSILQHRGATLLSAGASIAVQNFNQNLAVLSMLGAYALLLTTN
                     LPVEWIIVVFGVFICVMMWLAMRRHARNERTVDLGALVEE"
BASE COUNT          711 a         1031 c         1040 g          620 t
ORIGIN      
        1 ccaattgcac gctgccggct ttgcgcgatg gtgaagtcgc gcggcggatg atgcagccag
       61 tgtcgcagca gtcggctgcc catggtcgtg cagcatgtgt ccagcagcga gcacaaggtg
      121 ggggattccg tgccacgcaa ggtctcggtc agttcaagat tgcgtcgcgt ggccgggtcg
      181 aggccgatgt actccgactc gtactctacc ttcaggcttc gcacgtgccg aagctgctgg
      241 ccctgggtag cggctgcgta cagcagcagc gcacctgcgg cgccgcacgc gcaggtcagc
      301 gagtgcgcac cgaagccgtc gaggctggcg acatcgagtt gctcacgcag acgttgcgtg
      361 cccgagtcga tatcgaaatg ccacgcgggc gcccgtgttg tcgcccctac gttcggtact
      421 tcgaacggcg cgttggtcgc ggaaaacgag tcggccacca gcgtttccgc cgggcgaatg
      481 cgctcgagcg ccgcgctcaa ttgatctggc gcgacttcgg cgaggcgcaa tgcgccgctc
      541 gccaggttca gccacgcgag gccgacgctc gtgaccacgc cgcggcggtt atgcgccggg
      601 cagagggcga gcaggaagac gtcgtttttg tccgagagaa gcgcggcatc agtcagcgtt
      661 ccgggcgtga ctacacgcac aactttgcgt tcgaccggtc ccttcgatgt cgccgggtcg
      721 ccgatctgct cgcaaatagc gacggattcg ccaagtttca caagcttcgc cagatattgc
      781 tcgcacgaat gatggggaat gccggccatc ttgatcgggt ttccgcctga cgccccgcgt
      841 tgtgtgagcg tgaggtcgag caggcgcgaa gctttgacgg cgtcgtcgaa gaatagctcg
      901 tagaaatcgc ccatccggta aaacacgagc gtgccagggt gctccccttt gatgcgcagg
      961 tactgctgca tcatgggagt atggtgcgac agatcgacag cggcgccggg ttcgtgcgcg
     1021 gccgggacca agtcttgagc ggtagacgaa acggagatat gcgtacccat cttgcgtgcg
     1081 tgaatgtgcg aaggttctaa gggcacgagt gtaccgcgtc ggctggtcgc gggaatgtcg
     1141 gccgaatggc taacgcggga ctgggcgcaa tttcccgctg tgcggccaac aagggtgacc
     1201 catcacaaaa tgacgtctag acaagcaaaa acgccggacg tgccggcgtt tttgctttac
     1261 ctctaatgtt acgtaagacc gatcaggatc gtcccgccag aaatccaacc agcagcgcga
     1321 gtcctgccac cgcgccgagc gtatgccacg gcttgtcgtg tacgaattca tcggcataac
     1381 cggcggcgtc gttcagccgt ccggcaatgg cggaagacga accgtcgaac tgggcgcgcg
     1441 ccgttttcaa cttggcttgc aagtctttgc gcagcttgtc gacgtcaatg tctttcgcat
     1501 cgcgaattga actgtcgagc tcgtcgagca ggccgcgcaa ctgcgtgctc gcggtatcga
     1561 ccgcggcgct tccgccctga accgcgcgat ggcccacttt ggccgcgcca ttgatgttgc
     1621 tatcgagtgt ggaacgtgtg aacagaccca tttgcagctc ctttgacgtg tcgtttgttt
     1681 gtttcaaacc acgcaatccg cgtttattca acccacgcac tcagcgaaga gcgcgactct
     1741 tttgccggcc gaacaaagca cgcagcagat tctgttcccg caccctgatc ccggttcatt
     1801 ctgtcactct tcaaccaacg cgcccaaatc caccgtccgc tcattgcgtg catggcgccg
     1861 catggcaagc cacatcatca cgcagataaa cacgccaaac accacgataa tccattccac
     1921 gggcaggttg gtcgtcagca gaagcgcgta cgcaccgagc atcgataaaa cggcgaggtt
     1981 ctggttgaaa ttctgaaccg cgatggaggc cccggcggac aagagcgttg cgccgcgatg
     2041 ctgcaggatg gagttcatcg gcacgatgaa aaaacccgac agcgcaccca gcagaatcat
     2101 cagcggatac gcgcccagga tatagagcgg cgcgaacagc gggccgatat gcacgccgga
     2161 acccgccgga aacagatcct tgttgtagaa ggccatgccg acagccacag cacccgttac
     2221 gacgccgatc ggcaggacct tgagcgaact gcgcaatggc acccacgcgg cggcggcact
     2281 ggcgccgatc gcaataccga gtcccgtcac gccctgcagc acagccgctt ttgatagcga
     2341 caaacccagg ttcgccgctg cccatttcag caccaacagt tgcagcgtga ccgccgcacc
     2401 ccacagcaag gtcgtgaccc acaacgcgat ctgcgccagc ttgtcgcccc ataacacctt
     2461 gaatgcatgg atgaaatcgc cgacgagctt cgacggctcc ttcaaccggt tagggtatcg
     2521 cgcgccggtg tccggaatgc cgatattgat taccgctgcc gctgcataga cgaccatcac
     2581 ggcgaacatg gcggcgtcgg cagccgagcg gatcagtatc agatgtgcgc cgctaacaaa
     2641 gtgctgaacg tactggctga ccagcgcacc gccgatcaca gtgccgagaa tcgtcgatcc
     2701 gactgttgcc gattcaagcc acgcgttggc cgggatcagc ttttcgggcg gcaaaagctc
     2761 ggtgaggatg ccgtatttcg ccggggaata cgctgcggcg ccaagaccga ccacgccgta
     2821 agcgatcatg gggtgcacgc caaggatcat cagtgcgcag ccaccggcct tcagcgcgtt
     2881 ggagacgaac atgacgtagc gtttctggat ggaatcggcg aacgcaccca cgaacggcgc
     2941 gagcagcacg tacgacaccg tgaagaaaat ctgcaacagc ggcgtgaccc acgacgcgga
     3001 atgcatcacc gaaagcatcg ctatggcagc gatcagcagc gcgttgtcgg cgagcgacga
     3061 aacgaactgc gcggcaatga tcgtatagaa gccttttttc attagacgga gaggaacggc
     3121 ggcagaaagg ggaggaatgc cgcggacggc gagcaggaca ctttagcgga gccggcgacg
     3181 acgcgcagaa ttgcgcgggg aacgttaggc tttcggacgc ttgcagcgcg tttcggcacg
     3241 cgtacgaaag ccagcctgaa gccgtcgcgt cgttgctgag tcgttgcttg cgtcgttgtg
     3301 catcgaacgg ggttcagggc actgcgcggc caaacaaaaa ggcggccgta gccgcctgtt
     3361 tcaaccctgt ttcaacccgt cttttcaacc gttacgtact tt
//
LOCUS       DATGBK010001636         1869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_65933, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001636 DATGBK010000000
VERSION     DATGBK010001636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65933"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(188..949)
                     /locus_tag="VKJ77_22940"
     CDS             complement(188..949)
                     /locus_tag="VKJ77_22940"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC48192.1"
                     /translation="MSLIDLTGTRVVVTGGSQGIGAAAVRMLHKAGATVVFTYRSRED
                     LARTLCAELGDRAMMVYADLADAASLPLLMETCVRGMGGIDVLVNNAGVFAENPFTGD
                     DFEQWRLGWQQTFAVNLFAAADLAWLAMREMRRAGTGGRIINIASRAGHRGELTFADY
                     GASKAALLNLTKSIARGCARDNIVAFSVAPGFIATEMAAEAISDAGVEIAAEIPSGRI
                     GMPDDVAGIIAFLASPLAQYATGTTIDVNGASYVR"
     gene            complement(946..>1869)
                     /locus_tag="VKJ77_22945"
     CDS             complement(946..>1869)
                     /locus_tag="VKJ77_22945"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HMC48193.1"
                     /translation="DPLLATELLGRRLASPIGLAAGFDKNARVFGRMFRQGFSFVEIG
                     GVTPLPQDGNSRPRVFRLPEDGGVINRMGFPNDGAAAVEARVRATPARGMLGINLASN
                     AVCDDPVEDFVQLVTRFAGLADYLTLDISCPNTANGQIFLQPERLRELLARLHTLTFP
                     AQQPALLAKLSPDVDAHRLEELVLVLLEGKIDGIVVSNTTTARPGLRSDRGAERGGLS
                     GAPLFAASTAMLAHVARIVQGRVPLIGVGGITNGADAYAKICAGANAVQLYTSLIYAG
                     TALVTTIKRDLSRLLARAGFASVAAAAVSRL"
BASE COUNT          388 a          604 c          560 g          317 t
ORIGIN      
        1 tgaacggacg cccgctcgcg caacacgagc ggcgttggtt ttggccgctc aaacgcggca
       61 attggcggtt tatcgcggcg cgcgcaaatc atcgtgcgga ggtcacgatt gcggttgtcg
      121 acgaaccgcc tcactccacc cgcggtttca gcattttgcg ctagaagaac gacaggcggg
      181 cgctcattta gcgaacgtac gatgcgccgt ttacgtcgat cgtggtgccg gttgcgtact
      241 gcgcgagcgg cgaggcgaga aaagcgatga tgccggcgac atcgtcgggc atgccgatgc
      301 ggcccgacgg aatttcggcg gcaatttcga cgcccgcatc ggagatcgct tcggcggcca
      361 tttcggtcgc gataaaaccg ggcgcgaccg aaaacgcgac gatgttatcg cgcgcgcagc
      421 cccgcgcgat cgacttcgtg agattcaata gcgcggcttt gctcgcacca taatcggcga
      481 atgtcagttc gccgcgatga ccggcacgcg aggcgatatt gatgatccgg ccgcccgttc
      541 cggcgcgccg catctcgcgc attgcaagcc acgcaaggtc ggctgcggca aacaggttaa
      601 cggcgaatgt ttgctgccag ccgaggcgcc actgctcgaa atcgtcaccg gtgaacggat
      661 tctcagcgaa gactcccgcg ttattaacga gcacatcgat gccgcccatc ccgcgcacac
      721 atgtttccat caacaaaggt aacgacgccg catcggccag atcggcgtag accatcatcg
      781 cgcgatcgcc caactccgcg cataacgttc tggcaagatc ttcgcgcgag cgataggtga
      841 ataccacggt tgctccggcc ttgtgcaaca tgcgcaccgc cgcagcaccg atgccttgcg
      901 acccgccggt gaccacgacg cgcgttccgg taagatcgat caagctcata agcgtgagac
      961 cgccgctgca gcaaccgatg caaacccggc ccgcgccaac agccggctca aatcacgctt
     1021 aattgtcgtt acaagtgccg tacccgcgta gatgagcgac gtatagagct gaacggcgtt
     1081 cgcgcccgca caaatcttcg cgtacgcgtc ggccccattc gtgatcccgc cgacgccaat
     1141 aagcggaaca cgcccttgga cgatacgcgc aacgtgcgcg agcatcgcgg tcgaggcggc
     1201 aaacaacggt gcgccgctga ggccgccgcg ctcggcgccg cgatcggagc gcagccccgg
     1261 gcgcgcggtg gtcgtattgc tcacgacgat gccgtcgatc ttgccctcga gcagcacgag
     1321 caccaactct tccagacggt gcgcgtcaac atcgggcgaa agtttcgcca atagcgccgg
     1381 ctgctgcgcg ggaaacgtca gcgtgtgtaa ccgggccagc aattcgcgca ggcgttccgg
     1441 ctgcagaaag atttggccgt tcgcggtatt aggacacgaa atatcgagcg tgagataatc
     1501 cgcgagtccg gcaaagcgcg tcaccagctg cacaaaatct tcgaccggat cgtcgcacac
     1561 cgcgttactc gcaagattga tcccgagcat tccgcgggca ggcgtcgcgc gcacgcgcgc
     1621 ttccaccgca gccgcaccat cgttcggaaa tcccatgcgg ttgataacgc cgccgtcttc
     1681 gggcaaccga aagacgcgcg ggcgtgaatt tccatcttgc ggcaacggcg tgacgccgcc
     1741 gatttcaaca aaactaaaac cttggcgaaa catccggccg aatacgcgag cgttcttatc
     1801 gaatccggcg gccagaccaa tcggacttgc gagccgccgg ccaagcagtt cggtggccag
     1861 cagcgggtc
//
LOCUS       DATGBK010001637         1847 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_134823, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001637 DATGBK010000000
VERSION     DATGBK010001637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134823"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1618
                     /locus_tag="VKJ77_22950"
     CDS             <1..1618
                     /locus_tag="VKJ77_22950"
                     /inference="COORDINATES: protein motif:HMM:NF017853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HMC48194.1"
                     /translation="GVAPEAAKRVVGMIAPALVGSLMNKAASPEGARSLFASIMSLDA
                     NANIVDMLPQLVHGDGLQSLLASGTRLASGVASEERVNALSNAVASKTGVSVGATHAL
                     GGIVTTALFGVLKHYFTKSGGNVGQLPTLLGHQLPMVKASMTEDVASALGLGGAGSFL
                     SGVAAQMKAVSSHLEHPSTAGASAAVNPSLDRIVVEEKARSKKWWWLAVAAALALLAL
                     LFGRSCGNQTTVAPAPAAAPVAASAAAPVVTSTPAVAAEAASDVASEVAPASAPAAAP
                     APTKDALLTFTVDKLGAPTIHATVGSEEEKAKLLAALTAKFGADHLNATIAVDPDTKP
                     ASWLDKLDGLLPLMQLPGAEAKLSGEKIELSGSAADVRNGWMDKLKTLFGAGFTIGTF
                     NVTQAVQSAKDSFMSAFSSLSDDCTAADVTKVLNLQVINFRTGSDVPPQDAQLALAKS
                     AEVLKACEAKGKTVKLNVGGYSDNVGQPNTNLSLSKKRAEAVRAFLVKHGVSADSLTA
                     QGFGDANPIADNATASGRFANRRIDFSVQE"
BASE COUNT          344 a          550 c          614 g          339 t
ORIGIN      
        1 gggcgtcgcg cctgaagcag cgaagcgcgt ggtcggcatg atcgccccgg cactcgtcgg
       61 gtcgctgatg aacaaggccg catcgcctga gggcgcgcgc agcttgttcg cgtcgatcat
      121 gtcactggat gcgaacgcca atatcgtcga tatgctgccg caactcgtcc acggcgacgg
      181 cctgcaatcg ttgctcgcgt cgggtacgcg gctcgcgagc ggcgtggcat ccgaagaacg
      241 tgtgaacgcg ctgagcaatg cggtggcatc gaagaccggc gtatcggttg gcgccacgca
      301 tgcactgggc ggcatcgtca cgaccgcatt gttcggcgtg ctaaagcatt acttcacgaa
      361 gtccggcggc aatgttggtc agttgcccac gctcctcggc catcagttgc cgatggtgaa
      421 ggcaagcatg acggaagacg ttgccagcgc gctgggtctg ggcggcgcgg gtagtttcct
      481 gtccggcgtc gcggcgcaga tgaaagcggt gtcgtcgcat cttgaacacc cgtcgacagc
      541 cggcgcatcg gcggcggtca acccttcgct cgaccggatc gtggtggaag aaaaggcccg
      601 ttcgaagaag tggtggtggc tggccgttgc cgctgctctc gcgttgctcg cattgctgtt
      661 cggccgtagc tgcggcaacc agacgacggt cgcaccggca cccgctgcgg ctcctgttgc
      721 agcgtccgcc gcagcgcccg tggttacatc gactccggcg gttgctgctg aagcagcgtc
      781 ggacgtagcg tcggaagtcg ctccggcttc ggcacctgct gccgcaccgg cacctaccaa
      841 ggacgcgctg ctgacgttca ccgtcgacaa gctcggcgca ccgaccattc acgcaacggt
      901 cggcagcgaa gaagagaaag ccaagctgct cgccgcattg acggcgaagt tcggcgcgga
      961 tcatctgaac gcgaccattg ccgttgaccc ggacaccaag ccggctagct ggctcgacaa
     1021 gctcgacggc ctgttgccgc tgatgcaatt gccgggcgcg gaagccaagt tgtcgggtga
     1081 gaagatcgag ttgagcgggt cggctgccga tgtgcgcaac ggctggatgg acaagctgaa
     1141 gacgttgttc ggcgcgggct ttaccatcgg caccttcaat gtcacgcaag ctgtccaaag
     1201 cgcgaaagac tcgttcatga gcgcgttctc gtcgttgagc gatgattgca cggcagccga
     1261 tgtcaccaag gtcctgaacc tgcaagtcat caatttccgc acgggttccg acgtgccgcc
     1321 gcaagacgcg caactggcgt tggcgaagtc agcagaagtg ctgaaggcgt gcgaggcgaa
     1381 gggcaagacg gttaagctga atgtgggtgg ttattccgac aatgtcggcc agccgaacac
     1441 gaatctgtcg ttgtcgaaga agcgggcgga agcagtgcgc gcgttcctcg tgaagcatgg
     1501 cgtttctgct gattcgctga cggcgcaagg tttcggcgac gctaatccga tcgctgacaa
     1561 cgcaacggcc agcggacgtt tcgcgaaccg ccggatcgac ttctccgtgc aggaataatc
     1621 gcctgaccgg acgctggaat ggtccggtac tgacgaagac gtagcaagca aaacaccctg
     1681 tcccgcgcga gcgagacagg gtgttttgct ttaggcgctt ggcgagtcgc tgcctgaagc
     1741 gctacctcgg cgctacctcg gcgcggcgtt gcgcacgcgc gccggaaatc gttcagccgg
     1801 gccttgcagg aagtcatcgc cgagattggc cggcagtgtt tgccgca
//
LOCUS       DATGBK010001638         1689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_158145, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001638 DATGBK010000000
VERSION     DATGBK010001638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158145"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1653
                     /locus_tag="VKJ77_22955"
     CDS             <1..1653
                     /locus_tag="VKJ77_22955"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HMC48195.1"
                     /translation="LGERLRVRASRIKPVVRVLIDLFDTLGTHPLRVSEQDVGRLEAL
                     SDTGRWEFHGDISIRELAQRLQEGPGLREVPVPIGLHAELRGYQREGLNWMQYLRERN
                     LSGVLADDMGLGKTVQALAHVLVEKESGRLDRPVLVVLPTTLVHNWREEAKKFAPDLR
                     VLDLHGPQRKERFDQIDEHDLVLTTYPLLWRDQAMLSLHEYHLLILDEAQIVKNVATK
                     AAKGIRDLRARHRLCLTGTPLENHLGELWAQFDFLLPGFLGTQKDFTKRWRTPIEKYD
                     DPVRRDLLVRRIRPFMLRRRKDEVAKELPQKTTIVRTVALEGAQRDLYETVRIAMQEK
                     VRMAVADQGLARSHIVVLEALLKLRQVCCDPALVKLARAGRVEESAKLDLLLDMLPEL
                     LEEGRRVLLFSQFTGMLAIIAAALDKAGLPYVTLTGDTTDRITPVTRFQDGEVPLFLI
                     SLKAGGVGLNLTAADTVIHYDPWWNPAAENQATDRAHRIGQLKPVFVYKLIVAGSIEE
                     RIVAMQGRKAALADSILREDAAGAAKFSAEDIEALLAPMPAV"
BASE COUNT          303 a          431 c          601 g          354 t
ORIGIN      
        1 cttggcgaac ggctgcgagt gcgggcgtcg cggatcaagc cggtggtgcg cgtgctgatc
       61 gatctcttcg ataccctcgg cacgcatccg ctgcgcgtct ccgaacagga cgtcgggcgg
      121 ctggaagcac tcagcgacac gggccgctgg gagtttcacg gcgatatttc cattcgcgag
      181 cttgcgcagc gtttgcagga agggccgggg ctgcgggaag tgcccgtgcc gattggcttg
      241 catgccgagc ttcgagggta tcagcgcgaa gggctcaact ggatgcagta tttgcgcgag
      301 cgcaatctgt cgggcgttct cgccgatgac atgggtctcg gcaaaaccgt gcaggcgctg
      361 gcgcacgtcc tggtcgagaa ggagtcggga cggctggacc ggccggtgct ggtggtattg
      421 ccgaccacgc tggttcacaa ctggcgtgag gaagcgaaaa agtttgcgcc ggatttgcgg
      481 gtgctggatc tgcatggccc gcagcgcaag gaacgtttcg atcagattga cgagcacgat
      541 cttgtgctga ccacttaccc gctcttgtgg cgcgatcagg cgatgttgtc gctgcacgag
      601 taccacctgc tgatcctcga tgaagcgcag attgtgaaga acgtcgcgac caaggccgcg
      661 aagggtattc gcgatttgcg cgcgcggcat cggctgtgtc tgactggcac gccgttggaa
      721 aaccacctgg gtgagttgtg ggcgcaattc gatttcttgc tgcccggctt ccttggcacg
      781 cagaaagatt tcacgaagcg ttggcgcacg ccgatcgaga aatacgacga tccggtgcgg
      841 cgtgatttgc tggtgcgccg gattcggccg ttcatgctgc gtcgaaggaa ggatgaggtc
      901 gcgaaggaat tgccgcagaa aacgaccatc gtgcggaccg tggcgctcga gggtgcgcaa
      961 cgtgatctgt acgagacggt gcggatcgcg atgcaggaaa aagtgcggat ggcggtggcg
     1021 gaccagggtt tggcgcgcag ccatattgtc gtgctcgaag cgttgctcaa gttgcggcaa
     1081 gtttgctgcg atccggcgtt ggtaaagctg gcgcgggcgg ggcgcgtgga ggaatcggcg
     1141 aagctcgatt tgttactcga tatgctgccg gagttgctcg aggaagggcg tcgggtgctg
     1201 ctgttttcgc agttcaccgg gatgctggcg attattgctg ccgcgctcga taaagccggg
     1261 cttccgtacg tcaccttgac gggagatacg actgatcgga ttacgccggt gacgcgtttt
     1321 caggacggcg aggtgccgtt gttcctgatc agtctgaagg cgggcggcgt ggggttgaat
     1381 ctgaccgctg cggacaccgt gattcattac gatccgtggt ggaatccggc ggccgagaat
     1441 caggcgacgg accgggcgca tcggatcggg caattgaagc cggtgtttgt ctacaagctg
     1501 attgtggctg ggagtattga agaacggatt gtggcaatgc agggccgcaa ggccgctctc
     1561 gccgatagta tcttgcgtga ggacgccgct ggagcagcga agttctctgc cgaggatatt
     1621 gaggcgctgc tggcgccaat gccagcggtt tgagttcgtt gttcgtcagc gccggtgaat
     1681 tccaccggc
//
LOCUS       DATGBK010001639         5177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_181096, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001639 DATGBK010000000
VERSION     DATGBK010001639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5177
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181096"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VKJ77_22960"
     CDS             complement(<1..516)
                     /locus_tag="VKJ77_22960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007732225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC48196.1"
                     /translation="MTHFTFTAGSVAVVTGGAAGIGLAAAKRFAQLGLRVCIADLGAD
                     RLARATQEVAILAAHGADDVMAVETDVSRVEDLRRLEAAVQKRFGGTDILMNNAGIQP
                     GSAMFGPADNWERVLDVNLWGVIRGTQAFVPGMIARGRPGLVINTGSKQGITTPPGDP
                     AYNVSKAGLKAF"
     gene            complement(945..1256)
                     /locus_tag="VKJ77_22965"
     CDS             complement(945..1256)
                     /locus_tag="VKJ77_22965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4148 domain-containing protein"
                     /protein_id="HMC48197.1"
                     /translation="MKSLICAVFAAAVLAAPTLSFAQVSNAPVTRAEVKADLVRVEQA
                     GYRPASKDLDYPADIQAAEASIHTPSTADTSYGGVPNGTAFGSNAPVAGLQSQALYTH
                     H"
     gene            1695..2621
                     /locus_tag="VKJ77_22970"
     CDS             1695..2621
                     /locus_tag="VKJ77_22970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48198.1"
                     /translation="MDLKQLECFIAVAEERHFTRAARRLNIVQSGLSQTIRMLEDELG
                     GPLLVRSTRRVDLTPAGKVLLKEAAHVLAAAREARLAVTQVHGLARGQLRIGSIQSLA
                     PFVDLPASLGRFRNRFPGIDVQLLLDGATPLLDEVNEGRLDLVFTQPGETGAGMETRM
                     LACEDVVVVCSPSHPLADGPATNMMGLLDETFVDLKPDWGMRRLLDRGFAALPGARTT
                     AFEVNDISTLLDLVAQGLGIALVPESIARARAKDARASPIAVAKLSDSAAPCWELVVA
                     FKGHNGQPSDRITKTFLDLLVSKSGIPVQYQN"
     gene            complement(2680..4920)
                     /locus_tag="VKJ77_22975"
     CDS             complement(2680..4920)
                     /locus_tag="VKJ77_22975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012426104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HMC48199.1"
                     /translation="MQSDVHDTRPLIGGDFSRIDGPLKVSGTATYTADVNPSGMLYAV
                     PLCATIASGRIAQLNSVAASQMPGVRAVFTRENIGKFYRAGFGSDARIDEKRPPLSDD
                     VIYYYGQYIGVVVADTFEQAVAAASAVEVTYTLKKPDVRTAMSAESTPAADTQRGNAD
                     AAFAATPDAMKLDQTYTTPVETHNPIELHATVVVFDGQNYTFYETTQSIVNQRRVMAQ
                     MLGVPEDRVRVIMKYLGSGFGGKLFPWSHSLLAAAAARNLRRPVKLVVSRAMMFHNVG
                     HRTSTQQRMRLSATSDGRLTSLQQDYVYQNARAENRKENCGEATGYLYSTPNLRVTAA
                     YARRDIAPSTSMRGPGAVPGLFAVESSMDELAIKLNIDPVTLRLANEPSIDESLNVPF
                     SSRHLKECMTVGADRFGWSRRTPQVGSMRRDGLIVGWGVAVGSWAARRLPAEVSVELL
                     GDGTVRVSTATQDIGTGTYTVLAQMVSNITGIALEKISVVIGDTRLPPGPLSGGSMVT
                     ASLVPAATQAAQAAIQQMLSTAAQADHSPFAGQAVQTLAFDGGMVYRKGTSSGAGVPF
                     ERILAVAQVSAVMGRGQSGSSLDDADASKVSIHSYCAHFVEVTWQPKTARLRVSRVVS
                     VIDGGKVINARTGRNQIEGAIVMGVGMALFEETLYDSRSGAPINRNLADYVMTTHADA
                     PAIDVVFLDHPDFALNALGARGIGEIGLAGLAPAITSAVYHATGVRVRNLPVRIEDLL
                     MSTVTA"
     gene            complement(4947..>5177)
                     /locus_tag="VKJ77_22980"
     CDS             complement(4947..>5177)
                     /locus_tag="VKJ77_22980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HMC48200.1"
                     /translation="GRIEYVRVALGGVGVKPWRSHEAEAILLGQAPGAAVFRMAAEAA
                     VQSARPQSMNGFKIELAKRCIEHTLELTTQAA"
BASE COUNT         1037 a         1600 c         1499 g         1041 t
ORIGIN      
        1 gaacgccttc aggccggctt tggatacgtt ataggctggg tcgccaggcg gcgtagtgat
       61 accttgcttg gagccggtgt tgatcaccag acccgggcgg ccgcgcgcga tcattccagg
      121 tacgaaagcc tgggtgccgc ggataacgcc ccacaggttg acgtcaagca cccgttccca
      181 gttatcggca ggaccgaaca tggcgctgcc aggctgaatc ccggcgttgt tcatgagaat
      241 atccgtgccg ccgaaacgtt tctgaaccgc cgcctccagt cgacgcaggt cctcgacccg
      301 gctgacgtcc gtctcgacag ccatgacatc gtccgctcca tgggccgcca gaatggcgac
      361 ttcctgcgtg gcgcgcgcga gccggtccgc gcccagatcc gcgatgcaga cgcgaagtcc
      421 caactgcgcg aaccgcttgg cagcggcgag gccgataccg gcggcaccgc ccgtgacaac
      481 ggcgacggat ccggcagtaa aagtaaagtg tgtcatcagt gatccttctt tattcgcgat
      541 ggaaacgtca ggccgttgac gtcatttctg cggctccgga aacggcttga gcacaattga
      601 gttgggccga cgcagcgtca agatcgcggt cgtccgaacg cattgtcttg atcgccaacg
      661 tgagtggccg tacgacttac acacgccgcg cggcgccgat gacattcacc acattcacgc
      721 agtgaaacgc accgacaacc aacgggtcgt cgctgaaatc gtaatactga ttgcacaggc
      781 acgtacccgg cgccctactc tgttaattat ctctgatcct ccaccttcgc aacagttctt
      841 gaaagcctgc accgaagtcg cctgccgact ccacaactca ctatcgagtg actcgtgttt
      901 ttagcgaggc gctaaaagcg tgcacctcgc tgcgacagca gtcatcaatg atgcgtgtac
      961 agcgcctggc tctgaagccc ggctaccggt gcatttgatc cgaatgctgt cccgttgggt
     1021 acgccgccgt aggatgtgtc ggcagtcgat ggcgtgtgga tactcgcttc agcggcttga
     1081 atatcggctg ggtaatccaa gtccttgctc gccgggcgat agcctgcctg ttcgactcgc
     1141 acgagatcag ctttgacctc cgcacgcgtg accggtgcgt tgctcacctg ggcaaacgag
     1201 agcgtgggag cggcgagaac agcggcggcg aataccgcgc agatgagtga tttcataatg
     1261 gttgcctttc aatgtcgatg agatggtgtt gctcaccatg agcagcacct gattcgcatt
     1321 gtgcgtatcc gaccatgacc tcatgccaac tttcccatta caaacctgtt atccaaactc
     1381 gtgcatgtgc tgtcatccgg cacgccgcgt acaatatata gatggcaccg atcctgcagt
     1441 tcggtcagca cgacattgcc cgagaagatc ggagcgccac cggtaccttt gccgttcggg
     1501 ggcaacatct accaatccga aagtcatgtt ttaagccttc aaaactacgt gcgtcagagc
     1561 tacgatgcgt cttcctcagt aaagaaagcg ccgatccaga cacgcgttcc tgacgcggtt
     1621 gagagcgtcg gccaactgga agttgaattg ctacggtcgc ccctgcacga actcggcaca
     1681 tctgggacaa gtaaatggat ctaaagcagc ttgagtgttt cattgccgta gccgaagaac
     1741 gtcacttcac cagggcggca cgacggctga acattgtgca gtccggtctt tcccaaacaa
     1801 tccgcatgct tgaagatgag ctcggcggtc cattgctcgt tcgcagcacg cgccgcgttg
     1861 atttgacgcc tgcgggaaag gttcttttga aggaagcggc gcacgtgctg gcagcggccc
     1921 gcgaagcgcg cctggcagtc acccaggtgc acggcctcgc ccgtggacag ctgcgcatcg
     1981 gctccattca gagcttggcg ccgttcgttg atttgccggc ctctctaggg cgatttcgca
     2041 accggtttcc cggaatcgat gtccagttgc tgctggatgg cgcaacgcca ttgcttgacg
     2101 aagtgaatga ggggaggctt gatctcgtct tcacccaacc cggagaaacc ggtgccggga
     2161 tggagacaag aatgctggcc tgcgaggacg tggtagtcgt ctgttcgccg agccatccat
     2221 tggctgatgg acctgcgacc aacatgatgg ggctgctgga cgaaaccttc gttgatctca
     2281 agcccgactg gggaatgaga cgtcttctgg accggggctt tgcggctctt ccgggcgctc
     2341 gtacgacggc ttttgaagtg aatgacatat cgacattgct ggatctggtc gcgcaaggcc
     2401 tgggcatagc gctcgtgccc gaatcaatcg cgcgcgcacg cgcaaaggac gcgcgcgcaa
     2461 gcccgatcgc agtggcaaaa ttatccgaca gtgccgcacc ttgctgggag ctcgtcgttg
     2521 cgttcaaggg acataacgga caaccgtccg atcgaatcac caagaccttc ctggacctgc
     2581 tggtttcaaa gagcggcatc ccggtgcagt atcaaaatta gatgatcgtt tcttgcaact
     2641 caggacacgc tgaacggtcc cgcatcccga gctgcaatct cacgccgtca cagtagacat
     2701 cagaaggtcc tcgattcgca ccggaagatt gcggacgcga acgcccgtcg catgataaac
     2761 agcgctcgtg atcgccggtg caagcccagc cagcccaatc tcgccgatcc cacgtgcccc
     2821 gagtgcattg agcgcgaaat cgggatgatc gaggaacacc acatcaatgg cgggagcatc
     2881 agcatgtgtc gtcatgacat agtccgccag attacgattg atcggcgcgc ccgagcgtga
     2941 gtcgtaaagc gtctcttcga acagggccat gccgacgccc atcacaattg caccctcgat
     3001 ctgattgcgg cccgtgcggg cgttgatcac cttgccaccg tctattacgc tcaccacgcg
     3061 gctaactcgc aatcgtgccg tcttcggttg ccaggtcact tcgacaaaat gcgcgcagta
     3121 cgaatggatc gataccttcg aagcatccgc gtcgtccagg ctcgaacccg actggccccg
     3181 gcccatcacc gcactgacct gcgccacggc gagaatgcgc tcgaagggaa cgccggcgcc
     3241 ggacgacgtg cccttgcgat agaccatgcc gccgtcgaag gccagcgtct gcaccgcttg
     3301 ccccgcgaat ggcgaatgat ctgcctgagc cgccgtgctc agcatctgtt gtatcgctgc
     3361 ctgcgcggct tgcgtcgcgg ccggaacgag cgatgccgtt accatcgacc cgcccgacaa
     3421 cgggccaggc ggcaaacgcg tgtcgccaat gaccaccgaa atcttttcca gcgcaatgcc
     3481 cgtgatattc gaaaccatct gggcaagcac cgtgtaagtc cctgttccga tatcctgggt
     3541 cgccgtcgac acgcgcaccg tgccatcacc aagcaactcc acggagacct ccgccggcaa
     3601 gcgccttgcg gcccacgaac ccactgcgac gccccatccg acgatcagac cgtcgcggcg
     3661 catggaaccc acctgcggcg tgcgtcgcga ccagccgaaa cgatccgcgc cgactgtcat
     3721 gcattccttg aggtggcggg acgaaaacgg cacgttgagg ctttcgtcga tcgatggctc
     3781 gttggctagc cgcagcgtta ccgggtcgat attgagcttg atggcaagct cgtccatgga
     3841 ggactccacc gcgaacagac cgggcacggc ccccggccct cgcatcgacg tgctcggcgc
     3901 gatgtcgcgg cgcgcgtagg cggccgtcac gcgcagattg ggtgtgctgt acaagtaacc
     3961 ggttgcctca ccgcagttct ccttgcgatt ctcggcgcgt gcgttctgat acacatagtc
     4021 ctgctgcaac gacgtgagac gtccatcgct cgtcgcagac aagcgcatgc gttgctgcgt
     4081 gctggttcga tgacccacgt tatggaacat catcgcccgg ctaaccacta atttgacagg
     4141 tcgtcgaaga ttacgcgcgg cagcggcagc aagtaacgaa tgagaccagg gaaagagctt
     4201 gccgccgaac cccgaaccca gatatttcat gatgacgcga acccgatcct ccggcacccc
     4261 gagcatctgc gccatcaccc ttcgctggtt gacgatcgat tgggtcgttt catagaacgt
     4321 gtagttctga ccgtcgaaca caacgaccgt ggcgtgcagt tcgatcgggt tgtgcgtctc
     4381 gaccggagtc gtgtatgtct gatcgagctt cattgcatct ggagtcgcgg caaacgcggc
     4441 gtctgcattg cctcgctgtg tatcggctgc gggcgtactc tcggcagaca tcgcggtgcg
     4501 tacgtcgggt tttttgagcg tgtaagtcac ttctactgcc gaggcggccg ctaccgcctg
     4561 ttcgaaggta tcggcgacca ccacgccgat atattgcccg tagtaataga tgacatcgtc
     4621 ggacaacggc ggacgcttct cgtcaattct cgcgtcggac ccgaaacctg cccgataaaa
     4681 tttgccgatg ttctcgcggg tgaacaccgc cctgacccca ggcatttgtg aggcggcaac
     4741 gctattcaac tgcgcgatgc gtccgctcgc gatggtcgcg caaagcggca cggcatagag
     4801 catgccgctt gggttgacgt cagcggtgta ggtcgccgtg ccgctgactt tcagtgggcc
     4861 gtcgatccgc gaaaaatctc cgccgatcaa cgggcgagtg tcgtgtacgt ccgattgcat
     4921 tttctctccg gtttcgtgac gccgcgtcag gcagcctggg tggtgagctc gagggtgtgc
     4981 tcgatgcagc gcttcgccaa ttcgatcttg aagccattca tgctttgcgg gcgggccgat
     5041 tgcaccgccg cctcggcggc catccggaac accgcagcgc ccggagcctg gccgagcaat
     5101 attgcttcag cctcatgcga gcgccagggt ttgacgccaa cgccaccgag cgctacacgg
     5161 acgtattcaa tcctgcc
//
LOCUS       DATGBK010001640         2042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_42990, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001640 DATGBK010000000
VERSION     DATGBK010001640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42990"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1006
                     /locus_tag="VKJ77_22985"
     CDS             <1..1006
                     /locus_tag="VKJ77_22985"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HMC48201.1"
                     /translation="VGADISRETFNDNGFFALADGTQQSNSVTTTGTLFGAYLEDRWA
                     LGQRFAINGGLRYDHSTGFVGGALLSPRFEINYAPERATIFHAYYGRIYAAPALEDTR
                     RDAVITQTVNGALPAYDLKPELDHYVEFGFAHTFAPGLTMYANAWQRNSYNVLDTTQL
                     ANTPLFAVFNNAIGHANGLELRVAGNNPKNTFFLSASLSSALAGGVSGSTFLFDPSSV
                     SDMTLNPEDHDQSVTIEGAFTHHFGSDRSIYATIAPQFGTGYPVTFQDGTGGRLPAHL
                     TVDASLGREPDRATHRIGVQLAGENIFNRQYLIKVNNGFNTTQWATGRRVVLRLSAAF
                     "
     gene            1103..1705
                     /locus_tag="VKJ77_22990"
     CDS             1103..1705
                     /locus_tag="VKJ77_22990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HMC48202.1"
                     /translation="MNRALLVIGGLVVVLIIIGMSISGTYNHLVTLDQAVQAQWAQVE
                     NTYQRRADLVPNLVETVKGAANFEKSTYLAVAEARAKVGQVNVSAANAPTDPAAFAKF
                     ASAQDGLSSALTHLLVVSENYPQLKATQNFSDLQAQLEGTENRISVERMRFNTAAQAF
                     NTTRDSFPTVLIAGFFGSRFIEKPYFTSTPGSEKPPAVKF"
     gene            1705..>2042
                     /locus_tag="VKJ77_22995"
     CDS             1705..>2042
                     /locus_tag="VKJ77_22995"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HMC48203.1"
                     /translation="MQLTRTVRTLVRFVAFALCVFALTATARAETPIPPAPTAWLTDT
                     AGLLSAQTVQEQNARLEAYERGSGHQILVYIAPTTGGTPIDDWAVRAFAKWKVGRKNL
                     DDGLVLFIFA"
BASE COUNT          428 a          607 c          572 g          435 t
ORIGIN      
        1 agtgggggcc gacatttcgc gtgagacgtt caacgataac ggtttcttcg cgctggccga
       61 cggtacgcaa caatcaaatt ccgtcactac gaccggtacg ctcttcggcg cgtacctcga
      121 agaccggtgg gcgctgggcc agcggtttgc catcaatggc ggattgcgtt acgaccactc
      181 gaccggcttt gtcggtggag cgctccttag tccccgtttt gagatcaatt acgcgccgga
      241 gcgggcaacg attttccacg cgtactatgg ccgtatttac gccgccccgg cgctggaaga
      301 tacgcgtcgc gacgccgtca tcacgcagac agttaacggt gctttaccgg cgtacgactt
      361 gaagcccgaa ctcgaccatt acgtcgaatt cggattcgcg cacacctttg ccccgggact
      421 tacgatgtac gcgaatgcct ggcagcgcaa ctcatacaac gtcctcgaca cgacgcagct
      481 cgcgaacacg ccgctattcg ccgtttttaa caatgcaatc ggacacgcaa acggacttga
      541 gttgcgtgtt gccggcaaca atcccaagaa tacgttcttt ctctcggcgt cgctttcatc
      601 ggctctcgcc ggcggtgtct cgggaagtac gttcttattc gatccttcca gtgtttcgga
      661 catgacgctc aatcccgagg accacgatca aagcgtgacg atcgagggcg catttaccca
      721 tcacttcggt agcgatcgga gcatatatgc caccatcgcg ccacaatttg gaaccggcta
      781 cccggtgacg tttcaagacg gcaccggcgg acgtttaccc gcacatctta ccgtcgatgc
      841 gtcgctcgga cgtgagcccg atcgtgcgac ccatcgtatc ggcgttcagc ttgccggcga
      901 aaacatcttc aaccgacagt atttgatcaa ggtcaacaac ggcttcaata cgacccaatg
      961 ggcaacgggg cggcgcgtcg tgttacgcct ttcggccgcg ttttaaggcg tggctgaccc
     1021 gtagtggcga aggtgcaacg cggctctcga caaagtgcat cgagcacgat agccggcgtt
     1081 ggctacgcaa aggatgtcat ctatgaatcg cgcgcttctc gttatcggtg gacttgtcgt
     1141 tgttctcatt attattggaa tgagtattag cggcacgtat aatcatctgg tcacgctgga
     1201 tcaggcggtt caggcgcagt gggcgcaagt agaaaatact taccagcgcc gcgccgatct
     1261 cgtcccgaac ttagtcgaga ccgttaaggg cgcggccaac tttgagaaga gcacctacct
     1321 tgccgtggca gaagcgcgcg caaaggttgg tcaggtcaac gtcagcgccg cgaatgcgcc
     1381 caccgacccg gcagcatttg cgaaattcgc gagtgcgcaa gacggcctct cgtcggcgct
     1441 tacgcatttg ctcgtcgttt ccgagaacta tccacaactg aaagcgactc agaatttttc
     1501 cgatctgcaa gcgcagcttg aggggacgga aaaccggatc tcggttgagc gcatgcgttt
     1561 caacacggcg gctcaagcgt ttaatacgac gcgcgactca tttccaaccg tgctgatcgc
     1621 cggtttcttc ggatcgcgtt ttatcgaaaa gccgtacttc acatcgacgc ccggatccga
     1681 aaagccacca gctgtaaaat tctagtgcaa ctgacgagga cggtaaggac gctcgttcgt
     1741 ttcgtcgcgt ttgcgctgtg cgtttttgca ttaacggcta ccgctcgggc cgaaacaccg
     1801 atcccgccag cgccgaccgc gtggctgacg gacaccgccg gcctgctctc cgcgcaaacc
     1861 gtgcaggagc agaatgcgcg gctcgaagcg tacgagcgcg gcagcggcca tcaaattctc
     1921 gtgtacatcg cgccgacgac cggcggcacg ccgatcgacg attgggccgt gcgcgcgttt
     1981 gcgaaatgga aagtcggccg caagaacctc gacgacggcc tcgtgctgtt tatctttgcg
     2041 aa
//
LOCUS       DATGBK010001641         2146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_88469, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001641 DATGBK010000000
VERSION     DATGBK010001641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88469"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VKJ77_23000"
     CDS             <1..207
                     /locus_tag="VKJ77_23000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48204.1"
                     /translation="LGAPAGMREELRAQRIYTPSYWPEVATIESMPDFGRNVPGSTLF
                     LPCDQRLSRAQLEMMVRSLLDRLA"
     gene            204..770
                     /locus_tag="VKJ77_23005"
     CDS             204..770
                     /locus_tag="VKJ77_23005"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HMC48205.1"
                     /translation="MINDEIFLRELERRDLCGVNAWRADRELVGLLGGSFRYVGSEID
                     EKWFDAYLASRAHNVRLAICLKSTGEALGVAYLLGIDWVNRSAEFSIQIGVESARGRG
                     IGEAATRLTLQHAFDDLNLHRISLTVLASNARAKALYEKVGFRAEGLFRQAVYKGGRY
                     LDVIPMASLATDRPIPSPTVHHPVHESD"
     gene            757..1542
                     /locus_tag="VKJ77_23010"
     CDS             757..1542
                     /locus_tag="VKJ77_23010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011519644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HMC48206.1"
                     /translation="MNPIDPHHEAALTTTGWTVLARLIRTDLIDALVEALAPSLSLRD
                     EIRRRNGVLENSAGTLHHLLMDSACYVELLAEFNVMEPLFRAFFGGNFILNSYGGVIN
                     ERGAHAYVQKVHRDIRFGSDSRRFMLNALVMLDDFTLENGATHILSHSQNQPEAPDDD
                     HFYTQASRATGERGSVLLFDSRMWHAAGCNSTSQPRRALTLTFTSPFFKPQLDYARLV
                     GYSDLARQDAWLRQVIGFNARVPESLEEFYVPVEQRSYQRGQD"
     gene            1544..>2146
                     /locus_tag="VKJ77_23015"
     CDS             1544..>2146
                     /locus_tag="VKJ77_23015"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011519645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HMC48207.1"
                     /translation="MTSRDYNAEARDHPEHRYAYEFDYLMHAYMLKTFAPFFVGNDVL
                     ELGCFEGHFTKLLQKQFATVEVVEASSDCIAIASANVGNEVRFHHSTFETFEPERRYD
                     NIFLIHTLEHLDRPVEVLNRIGGWLSERGRLFVAAPNARAASRQIAVNMGLIDHAAAV
                     THAEAEHGHRVTYSLDTLKADVRAAKLQPVTQGGIVFKGLA"
BASE COUNT          424 a          635 c          635 g          452 t
ORIGIN      
        1 ctcggtgcgc ctgctggtat gcgtgaggaa ctgcgagcgc aacgcatcta cacaccgagt
       61 tactggcccg aagtggccac gatagaatcg atgccggact tcgggaggaa tgtgccggga
      121 tcgacgctgt tcctgccctg cgatcagcgg ctttcgcgtg ctcaactcga aatgatggtg
      181 cgatctttgt tggaccgact ggcatgatca acgacgaaat attcctccgc gaactcgaac
      241 gtcgcgacct ttgcggcgtc aacgcatggc gtgccgaccg cgagctggtt ggactgctgg
      301 gcggcagctt tcgttacgtg ggtagcgaga tcgatgaaaa atggttcgac gcctatctgg
      361 cttcgcgcgc gcacaatgtt cgcctcgcga tctgtctcaa gtccacgggc gaagcgttgg
      421 gtgtcgccta tctgctgggt atcgactggg tcaaccgctc tgccgaattc tcgatccaga
      481 ttggcgtgga atcggcgcga ggccgcggaa tcggtgaagc agcgacacgc ttgacgctcc
      541 agcatgcatt cgacgacctg aatctacacc gcatttccct gacggtactg gcgtccaatg
      601 cgcgcgcgaa agcgctctac gagaaagtgg gctttcgtgc cgagggcctg ttccgacagg
      661 cggtctataa aggcggccgc tatctcgacg ttattccgat ggcctcgctc gctaccgacc
      721 ggccaattcc gtcgcccact gtgcaccacc ccgttcatga atccgattga tccacaccac
      781 gaagccgccc tgacaaccac cggctggacc gtgcttgcgc gcctgattcg taccgatctg
      841 atcgatgcgc tcgtcgaggc ccttgcgccg tcgctcagct tgcgcgacga gatccggcgt
      901 cgcaacggcg tgctggaaaa cagtgccggt accttgcacc acttgctgat ggatagcgcg
      961 tgctacgtcg agttgctcgc tgaattcaac gtaatggaac cgcttttcag ggcatttttc
     1021 ggcggcaact tcatcctgaa ttcgtatggc ggcgtgatca atgaacgcgg cgcgcacgcg
     1081 tatgtgcaga aggtgcatcg cgatatccgc tttggctccg attcgcggcg gttcatgcta
     1141 aacgcgctcg tgatgctcga cgatttcacg ctggaaaacg gtgcgacgca catcctgtcg
     1201 cattcgcaga accagccgga agcgcccgac gacgatcatt tctacacgca ggcatcgcgt
     1261 gcgaccggtg aacgcggctc cgtgctgcta ttcgattcac gcatgtggca tgctgccggc
     1321 tgcaactcga caagccagcc gagaagagcg ctgacactga cgttcaccag cccgtttttc
     1381 aaacctcaac tcgactacgc gcggctggtc ggctatagcg atcttgcgcg ccaggacgca
     1441 tggttgcggc aggtaatcgg cttcaatgcg cgggtgcctg aatctcttga ggagttttat
     1501 gtaccggtcg agcagcgcag ttatcagcgt ggacaggact gacatgacga gcagagacta
     1561 caacgcggaa gcccgcgatc atcccgaaca ccggtacgcg tacgaattcg actacctgat
     1621 gcatgcctat atgctgaaga cgttcgcacc gttttttgtg ggcaacgacg tgctcgaact
     1681 cggctgcttc gagggtcact tcacaaagct gctgcaaaag cagttcgcga ctgtcgaagt
     1741 ggtcgaggca tcatcggatt gcatagcgat cgcctcggcc aatgtgggta acgaggtcag
     1801 gttccatcat tcgaccttcg aaacgttcga gcccgaacgg cgttacgaca acatcttcct
     1861 gattcatacg cttgaacacc ttgaccgccc cgtcgaagtg cttaaccgta ttgggggatg
     1921 gctctcggag cgtggtcgtt tgtttgtcgc cgcgccgaat gcacgagccg cgtcgcgtca
     1981 gatcgccgtc aacatggggt tgatcgatca cgccgccgcc gtgacgcacg ccgaggccga
     2041 acacggccac cgtgtgacgt actcactgga tacgcttaag gccgacgtgc gggcggcgaa
     2101 gctgcagccg gttacgcaag gtggcatcgt gttcaaaggc ctggcg
//
LOCUS       DATGBK010001642         3116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_181101, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001642 DATGBK010000000
VERSION     DATGBK010001642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3116
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181101"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..237
                     /locus_tag="VKJ77_23020"
     CDS             <1..237
                     /locus_tag="VKJ77_23020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48208.1"
                     /translation="THQSLCDMPPMRPCSPGSIDIETREPTVAFAVNFTPGRLRRVAP
                     GKQAPLDLFAFVEAIYDLQHYFAIFQSHSGNARP"
     gene            234..692
                     /locus_tag="VKJ77_23025"
     CDS             234..692
                     /locus_tag="VKJ77_23025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012251571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC48209.1"
                     /translation="MTSTTPIEIKSVAVADFDAWLALWRGYQAFYKTDIPMDTTLRTW
                     VRMLDPAEPVFGALAVMDGRVVGMVHWIMHRSCWTAGDYCYLQDLYVEPDIRGAGIGR
                     KLIEHVYAKAAEAQCSRVCWLTHETNTDAMQLYDRIADRSGFVQYRKMLG"
     gene            complement(740..1744)
                     /locus_tag="VKJ77_23030"
     CDS             complement(740..1744)
                     /locus_tag="VKJ77_23030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HMC48210.1"
                     /translation="MNSSHTSLPRIAVLATGGTIAGEAGDASKTSGYKAGVVGVDKLL
                     GAVPSLSQVAQIQAEQVASIDSKDMTPALWATLCTRVNALLAQDDIEGIVITHGTDTL
                     EETAYLLHLTVKSEKPVVLTAAMRPATALSADGPLNLLNAVTVAASRASWKQGVLVAF
                     NNQIHCARDVTKTSTYAVDAFRSPEGGALGWVQDGQVEFQRSVVRPHTLHSPFQMPAE
                     LPAVEIVTSYAGASRAAIDALVATGVKGLVMAGTGNGSIHSTLQQAVADAVKQGVAVV
                     RSSRVGAGHVMRNGAAPDDALGSITAGALNPYKARVLLMLALGAGTASADLQRVFDTY
                     "
     gene            complement(1805..2731)
                     /locus_tag="VKJ77_23035"
     CDS             complement(1805..2731)
                     /locus_tag="VKJ77_23035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CysB family HTH-type transcriptional regulator"
                     /protein_id="HMC48211.1"
                     /translation="MNFQQLRFVREAVRQNMNLTEVANVLYTSQSGVSKQIKDLEDEL
                     GVDIFIRRGKRLTGLTEPGKEVHQVIERMLLDAENLRRVARQFADQDNGHLVVATTHT
                     QARYALPKVIRQFTEVFPKVHLALRQGSPQQIAQMIINGEADIGISTEALDRYPDIVT
                     FPCYTWHHTVVVPKGHPLVGRENITLDEIAEYPIITYDHDFTGRSHIDQAFAKAGALP
                     DVVLTAIDADVIKTYVELGMGIGIVAAMAFDEKRDTELVALDTQHLFEASTTRVGLRK
                     GAFLRAYAYRLIEMFAPQLDEAQIAAQLREAA"
     gene            complement(2768..>3116)
                     /locus_tag="VKJ77_23040"
     CDS             complement(2768..>3116)
                     /locus_tag="VKJ77_23040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014897109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TOBE-like domain-containing protein"
                     /protein_id="HMC48212.1"
                     /translation="GAANRLKGSVDANGFVAQGAAQPIATEANFAGPAFAYVRPHDLT
                     LFPIATGHRDGIVVDVRRVVTLGGSVRVDLEGAEGNVLEAELDRETWRGLNLNIGDGV
                     TAVPRVLRVFPAH"
BASE COUNT          592 a          973 c          903 g          648 t
ORIGIN      
        1 acccatcaat ccttgtgtga catgccgccc atgcgcccat gttctcctgg cagcatcgac
       61 atcgaaacgc gcgaacccac cgttgccttc gccgtcaatt tcactcccgg acgcctccgt
      121 cgcgtggctc ctggaaaaca agccccgctg gatctttttg cttttgttga agcgatctat
      181 gatctccaac actatttcgc aatattccaa tcacattcag gaaacgcacg accatgacat
      241 cgacaacccc tattgagatc aaatcggtgg ccgttgccga cttcgatgcg tggttggcgt
      301 tatggcgcgg ttatcaggcg ttctacaaaa ccgatatccc catggatacg accctgcgca
      361 catgggtacg catgctcgat cccgcggagc cggtattcgg cgcattggcg gtcatggatg
      421 gccgtgtagt cgggatggtg cactggatca tgcatcggtc gtgctggacc gcaggcgact
      481 attgttatct gcaggactta tacgtggaac cggatattcg cggagccggg attggacgca
      541 agctcatcga gcatgtctat gccaaggccg cggaagcgca gtgctcgcga gtctgttggc
      601 tgactcatga aaccaacacc gatgcgatgc agttgtatga ccgcatcgcg gatcggtcgg
      661 ggtttgtgca atatcggaag atgctggggt gaacgcatcg ttcgaaagct aacgccggag
      721 gcccggcgtt tatctggcgt caatacgtat cgaagacacg ttgcaagtct gccgacgcag
      781 tgcccgcccc taacgccaac atcagcagca cgcgcgcctt gtacgggttc aacgcgcctg
      841 ccgtgatcga gccaagtgca tcgtcgggtg ccgcgccatt gcgcatcacg tgcccggcgc
      901 caacccgcga cgaccgaacc accgccacgc cttgtttgac ggcatcggca acggcttgtt
      961 gcagcgtcga atgaatcgag ccgttgcccg tccctgccat cacgagccct ttgacaccag
     1021 tggcaacgag tgcatcgata gccgctcgcg acgcccccgc gtaactcgtc acgatctcga
     1081 ccgcgggcag ttcggcgggc atctggaacg ggctatgcag cgtgtgcggc ctgaccactg
     1141 aacgctggaa ttccacctgc ccgtcctgca cccagccgag cgcgccgcct tcgggcgaac
     1201 ggaaggcatc gacggcatag gtgcttgtct tggttacgtc gcgggcacag tggatctggt
     1261 tgttgaacgc gaccagtacg ccctgcttcc acgatgcccg gctcgccgct accgttaccg
     1321 cgttgaggag gttcagcggg ccatcggcgg ataaagccgt cgcgggccgc atggccgcgg
     1381 tcaacacgac cggcttctcg cttttaacgg tcagatgcag caggtaggcg gtttcctcga
     1441 gcgtatcggt gccgtgcgta atgacgatgc cttcgatatc gtcctgcgcc agcaacgcat
     1501 tcacccgcgt gcagagcgta gcccacagcg cgggtgtcat gtccttgctg tcaatgctcg
     1561 ctacttgctc ggcctgaatc tgcgcgactt gcgagagcga gggcacggcg ccgagcagtt
     1621 tatcgacgcc gactacgccg gccttgtaac ccgaggtttt cgaggcatcg ccggcctcgc
     1681 ccgcgatggt tccgccggtg gccagcaccg cgatccgcgg caatgaagtg tgtgatgagt
     1741 tcatggccgt aattgtagcg gagcggcggc tggctgattc ttacgccttt aagcttttca
     1801 agcgctaggc cgcttcccgc aattgcgccg cgatctgcgc ttcatccagt tgcggcgcga
     1861 acatctcgat cagcctgtac gcatacgccc gcaggaaagc gcccttgcgc aagcccacgc
     1921 gcgtggtgct ggcttcgaac agatgctgcg tgtcgagcgc gacgagttcg gtatcgcgtt
     1981 tttcgtcgaa ggccatcgcc gccacaatgc cgatgcccat gcccagttcc acatacgtct
     2041 tgatgacgtc ggcatcgata gcggtcagca ccacgtccgg cagcgcgccc gctttcgcaa
     2101 acgcctgatc gatgtgcgag cgaccggtga aatcatggtc ataggtgatg atcgggtatt
     2161 cggcgatctc atcgagcgtg atgttctcgc ggccgaccag cggatgcccc tttggcacga
     2221 ccaccgtgtg atgccacgtg tagcacggga acgtgacgat atccggatac cggtcaagcg
     2281 cttctgtcga aatgccgatg tccgcttcgc cattgatgat catctgcgcg atctgttgcg
     2341 gactgccctg acgcagcgcg agatggacct tcgggaatac ctcggtgaac tggcggatca
     2401 ccttgggcag cgcataacgc gcctgcgtgt gggtggttgc caccaccaga tggccgttgt
     2461 cctgatcggc aaattggcga gccacgcggc gcagattctc ggcatcgagc agcatgcgct
     2521 cgatcacctg atgcacctcc ttgcccggct cggtcaggcc cgtgagacgc ttgccgcgtc
     2581 gaatgaagat atcgacgccg agttcgtcct caagatcctt gatctgcttc gatacacccg
     2641 attgcgatgt ataaagcacg ttcgcgacct cggtcagatt catgttctgc cggacggctt
     2701 cacgtacgaa acgcaattgc tggaagttca tgtcagcctc tcttttcagt atgcttattc
     2761 aataagctca atgcgccggg aacacgcgca gaacacgcgg tacggcggtc acgccgtcgc
     2821 cgatattcag attcaatcca cgccaggttt cgcgatccag ttccgcttcg agcacgttgc
     2881 cttcagcgcc ttccagatcc acgcgcaccg aaccgcccag cgtcacgaca cggcggacat
     2941 cgactacgat gccatcgcga tgaccggtag caatcgggaa cagcgtcagg tcgtgcggcc
     3001 gtacgtaagc gaacgccgga cccgcgaaat ttgcttctgt agcgatcggc tgcgcagcgc
     3061 cttgcgccac aaaaccgttc gcatctacgc tgcccttgag ccggtttgcc gcgcca
//
LOCUS       DATGBK010001643         4552 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_134875, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001643 DATGBK010000000
VERSION     DATGBK010001643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4552
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134875"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(369..3743)
                     /locus_tag="VKJ77_23045"
     CDS             complement(369..3743)
                     /locus_tag="VKJ77_23045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC48213.1"
                     /translation="MPSFFINRPVFAWVIAILICLFGIISVHGMGIDSYPDIAPPEVT
                     VTAQYPGASAQTMESTVTQVIEQQLTGIDNLLYFSSNSSSNGQTQIILTFATGTNPDI
                     AQVQVQNKVTLAQPLLPTQVTQQGVVVAKASPDILMFVALQSDSPAIDAGRLSDILAS
                     QIQPNIGRVNGVGNTTLLGSEYAVRIWLDPDKLQSYGLSTTQVLNAVSSQNAQFAAGS
                     LGADPAVKGQVFTANVTGDSLFSSLKQFQDIIVVANSNGTTVKLSDVARISFGSQTYG
                     FAPVYNGKAAGGMAVFLLPGANALAVAKAVKAEMATLAKDLPEGVTWSVPYDTTPFIT
                     ASIVDVIRTLVEAIVLVFFVMLIFLQNLRATIIPTLVIPVALLGTFIGLSALHYTLNQ
                     LTLFGMVLAIGIVVDDAIVVIENVERIMTEEHLEPRAATRKAMGQITGAIIAITVVLS
                     AVFIPSALQPGATGIIYAQFALTIAVSMGFSAFLALSFTPSLCAAILKPEHAANKNAF
                     YRWFDRTFDWTTKKYIGHAGRAVTHAPRWMIGFVLVVVLTGFMYTKLPTSFVPDEDQG
                     FVLALINLPPGSTLQTTDHVMAEVRDKLGNSPFSKEIVGIFQPEGFSFVGTSENVGMS
                     FIKLADWNQRHDTAMTLIPKINQTLHGISDAQIFAVNLPTIRGLSQFGGIDMYLQARE
                     GQSRAELAQATGTLLAGATKSPVLFGIRPNSLPSAPQLDIAVDRTQAQAMGLSLSDVY
                     STLQMELAPFYIDQFTYAGRVKRVYIQADAPYRMGIDAFQHLYTPSLFTNNASTGTST
                     TASQSSSSSASASNGFTTPVDPSPANTLISPYNMVPLASVVNAKWSFGPTVLPRYNGY
                     SAIEIVGNSAPGYSTGQAIDVLQHIVDRQLPTGFAADWTGQSFQELLSGSSAITLLLL
                     SIVVVFLCLAALYESWSIPAAVLLVVPLGMLGMLAFCLSFGVPNDIYFKIGLVTVIGL
                     AAKNAILIVEFAVEGQQRGMTLRDAVLTAARLRLRPILMTSMAFILGVFPLVVSSGAG
                     AASRHEIGTGVIGGMLFATFFGLLLIPVFYVVVRRLLGDKLDEVSHKMPHHDPDGDDD
                     DGHGKHDGGTPGGGDGHGGGAGGASGQSPAGEGSPA"
     gene            complement(3754..>4552)
                     /locus_tag="VKJ77_23050"
     CDS             complement(3754..>4552)
                     /locus_tag="VKJ77_23050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC48214.1"
                     /translation="SVASARVSLNYTRVTAPIGGITGQQQVTAGAVVGNSTSDTGGSG
                     TLLTTVQQIDPMYVNFTISSADLATLQDSQSAGSVDLSQQNHTTVRIALPNRASYGTP
                     GTLDFSDVTVNAATGSVNLRALVANSQRRLLPGMYVTLTVNFGQQKNVFLIPQQGVQR
                     DTVGAYVLVVGADSKVERKDVVAIDSLGNNWIVTQGLADGDQIIVTGVQMAKEGAPVK
                     TVAWQPPAASGAVAVSAAPMTPAASAASSPVAVPVSTASAASAGLAR"
BASE COUNT          871 a         1443 c         1402 g          836 t
ORIGIN      
        1 cgcctcgcag agcgcgttgc cgtagcgtgt gaattcgcat gtgaagatgt gcacggcgac
       61 gcggacctgc tggatataaa acgcgtcgcc ggctgacgtt attccgcttg atggccccgg
      121 ttgaggcatc ggtttgttac gccgtgtttc ctttcagatc aggcaatgtt gtacggaatg
      181 ccgccgcgct gctgaagcca gatcaggcca tcggcgcgac gtcaatgcaa tccgtcgtcc
      241 gggtgttaag aacacgcagt gcggtgcgac gggggctcgc atttttctgc tcgaacggcc
      301 cagggccgac ctcttggcgc tcgactagat cgacagtagg gacacgggtg atgagcaatt
      361 gaggttcgct aggctggcga gccctcccca gcagggcttt ggccgctcgc gccccccgcg
      421 ccgccgccat gaccgtcccc accacccggt gtcccgccgt cgtgcttgcc gtggccgtca
      481 tcatcgtccc cgtcgggatc gtgatgaggc atcttgtgcg acacctcgtc gagcttgtcg
      541 cctagcagtc gccgtacgac cacatagaac accggaatca gcaacagacc gaagaacgtc
      601 gcgaacagca tgccaccgat cacgccggtc ccaatttcgt gacgtgaagc ggcgccggca
      661 cccgatgaga caacgagcgg gaacacgccg aggatgaacg ccatcgaggt catcaggatc
      721 ggacgcagtc tcagccgggc cgcggtcagg acggcgtcgc gcagtgtcat gccacgttgc
      781 tgcccctcca ccgcaaactc gacgatcaga atcgcgtttt ttgccgcgag gccgatcacg
      841 gtcacgaggc cgatcttgaa gtagatgtcg ttcggtactc cgaacgagag acagaacgcc
      901 agcatgccga gcatgccgag cggcacgacg agcagtacgg cagccggaat cgaccagctt
      961 tcatacaacg cggcgagaca caggaacacc accacgatcg acagcaacag cagcgtgatc
     1021 gccgacgagc ccgacagcag ttcctggaac gactgcccag tccagtccgc cgcgaaaccc
     1081 gtcggcaact gtcgatcgac gatatgctgc agcacatcga tcgcctgtcc ggtcgagtag
     1141 cccggggcgg agttgccgac gatctcgatc gcggagtagc cgttgtagcg cggcagcacc
     1201 gtcggcccga agctccattt ggcattcact acgcttgcga gcggcaccat gttgtaaggg
     1261 ctgatcaacg tattcgcggg ggacgggtcg acgggcgtgg tgaagccgtt cgacgcgctc
     1321 gcgctgctcg atgacgactg gctcgcggta gtgctggtgc cggtgctggc gttgtttgtg
     1381 aacaggctcg gcgtatacag gtgctggaaa gcgtcgatcc ccatccggta cggcgcatcc
     1441 gcctggatat agacgcgctt cacgcgcccg gcataggtga actggtcgat gtaaaacggc
     1501 gcgagctcca tctggagcgt ggagtagaca tcgctcagcg acaggcccat cgcctgggcc
     1561 tgggtacggt ccaccgcgat gtccagttgc ggtgcgctcg gcagtgagtt ggggcgaatc
     1621 ccgaacagca ccgggctctt cgttgcaccc gcgagcagcg tgcccgtggc ctgcgcaagc
     1681 tccgcgcgcg actggccttc acgtgcctgc agatacatat cgatcccgcc gaactggctg
     1741 agaccgcgga tggtcggcag gttcaccgcg aagatctgcg catcggaaat gccatgaagg
     1801 gtctggttga tcttcggaat cagcgtcatc gcggtgtcat ggcgctggtt ccagtctgcc
     1861 agcttgatga acgacatgcc gacgttctcg cttgtgccaa caaagctgaa gccttccggc
     1921 tggaaaatcc ccacgatttc cttgctgaac ggactgttcc cgagcttgtc gcgcacctcg
     1981 gccatcacgt gatccgtggt ctgtagcgtc gagccgggcg gcaggttgat cagtgcgagc
     2041 acgaagccct ggtcttcgtc aggcacgaag ctggtcggca gcttcgtata catgaaacct
     2101 gtcagcacca cgacgagcac gaatccgatc atccagcgcg gcgcatgggt cacggcccgg
     2161 ccggcatggc cgatatactt tttcgtcgtc cagtcgaaag tacggtcgaa ccagcggtag
     2221 aacgcgttct tgttcgccgc gtgttcgggc ttcaggatcg ccgcgcacag cgaaggcgta
     2281 aacgacagcg cgaggaacgc ggagaatccc atcgacacgg caatcgtcaa cgcgaactgc
     2341 gcgtagatga tgccggtcgc gcccggctgc agcgccgacg gtatgaacac ggcggacagc
     2401 accaccgtga tggcgatgat ggcgccggtg atctggccca tcgccttgcg ggtcgccgcc
     2461 cttggctcca aatgctcctc ggtcatgatg cgttcgacgt tttcgatcac gacgatcgca
     2521 tcgtcgacga caatgccgat cgcgagcacc atgccgaaca gcgtcaactg gttgagcgtg
     2581 tagtgcagcg ccgacagccc aatgaaagtc ccgagcagcg caaccggaat cacgagcgtc
     2641 ggaatgatcg tggcccgcag attctgcagg aagatcagca tcacgaaaaa caccagcacg
     2701 atcgcctcga cgagcgtgcg gatcacgtcg acgatcgagg cggtgatgaa aggcgtggtg
     2761 tcgtagggca cgctccatgt gacgccttcc ggcagatctt ttgccagcgt cgccatctcg
     2821 gctttgaccg ccttcgcgac cgcaagcgca ttggcgcccg gcagcaggaa cacggccatc
     2881 ccgcccgccg ccttgccgtt atagaccggc gcaaagccgt atgtctgcga gccgaacgaa
     2941 atacgcgcca cgtcgctcag cttgaccgtg gtgccgttgc tgttcgcgac gacaatgatg
     3001 tcctggaact gcttgagcga cgaaaagagg ctgtcgcccg tcacgttcgc cgtaaacacc
     3061 tgccctttca cggccggatc cgcgcctagc gagccggctg cgaactgcgc attctgcgag
     3121 ctcactgcat tgagcacctg ggtcgtcgat agcccataac tctgcagctt gtcggggtcg
     3181 agccagatgc gcacggcgta ctccgaaccg agcagcgtcg tattgccgac tccgttcaca
     3241 cggccgatgt taggctggat ctgtgatgcg agaatatcgg agagacgccc tgcatcgatt
     3301 gccggactat ctgattgcag cgcgacgaac atcaggatgt cggggctcgc cttcgccacc
     3361 acgacccctt gctgcgtgac ctgcgttggc agcagcggct gggcaagcgt gaccttgttc
     3421 tgcacctgca cctgggcgat gtccgggttg gtgccggtcg cgaacgtaag gatgatctgc
     3481 gtctggccat tcgagctcga gttcgaactg aaatacagca gattgtcgat gcccgtgagc
     3541 tgctgctcga tcacctgggt taccgtcgat tccatcgtct gggcgctcgc gcccggatac
     3601 tgcgcggtga cggtcacttc cggcggcgcg atgtccgggt acgaatcgat ccccatgccg
     3661 tgcaccgaga taatgccgaa caggcagatc aggatcgcaa tgacccaggc gaagacagga
     3721 cggttgatga aaaaactcgg catgatcggt ctcctacctc gccaagccgg ccgaagccgc
     3781 tgacgctgtg gaaaccggca cggccacggg gctcgacgcg gcggacgctg ccggcgtcat
     3841 gggtgcggcg gaaaccgcca ccgcgccaga cgccgcaggc ggctgccacg cgacggtctt
     3901 caccggtgct ccctccttcg ccatctgcac cccggtcacg atgatctggt cgccgtctgc
     3961 cagcccctgc gtcacgatcc agttgttgcc gagactatcg atcgccacga cgtccttgcg
     4021 ctccaccttg ctatccgcgc cgacaaccag cacgtacgca ccgaccgtgt cgcgctgcac
     4081 gccctgctgc gggatcagga acacattttt ctgctggccg aaattgaccg tcagcgtcac
     4141 atacatgccg ggcagcagac gtcgctgcga gttcgcaacg agcgcacgca gattgaccga
     4201 acctgtagcc gcattgaccg ttacgtcgga gaaatcgagc gtgcccggcg tgccatacga
     4261 cgcacgatta ggtagcgcga tccgcaccgt ggtgtgattc tgctgtgaca ggtcgaccga
     4321 accggcgctc tgggaatcct gcagcgtcgc cagatcagcc gaactgatcg tgaagttcac
     4381 gtacatcgga tcgatctgct ggaccgtcgt cagcagcgtg ccgcttccac ccgtgtcgga
     4441 cgtgctgtta ccgaccacgg cgcccgccgt cacctgttgt tgtccggtaa taccgccgat
     4501 cggcgccgtc acgcgcgtgt agttgagcga gacccgcgcg ctcgcgacgc tc
//
LOCUS       DATGBK010001644         3721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_43012, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001644 DATGBK010000000
VERSION     DATGBK010001644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3721
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43012"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..370
                     /locus_tag="VKJ77_23055"
     CDS             <1..370
                     /locus_tag="VKJ77_23055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011549402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fumarate hydratase C-terminal domain-containing
                     protein"
                     /protein_id="HMC48215.1"
                     /translation="VVGPAGPTTATRMDKFTDLMLSQTGLISMIGKAERGPVAIEAIK
                     KHKAAYMMAVGGAAYLVSKAIRGAEVIAFEDLGMEAIYEFDVQDMPVTVAVDSTGTSV
                     HQTGPKEWQAKIGKIPVATV"
     gene            608..1084
                     /gene="bfr"
                     /locus_tag="VKJ77_23060"
     CDS             608..1084
                     /gene="bfr"
                     /locus_tag="VKJ77_23060"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006028498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HMC48216.1"
                     /translation="MQGDIKALEYLNQQLKNELTAINQYFLHARMYKHWGLEKLGKHE
                     YDESIGEMKHADWLIQRIFMLDGLPNLQDLHKLLIGEETEEILKCDLKLEQISQSTCK
                     EAIAYCESVRDFISREIFVKILDDTEEHIDWLETQIDLVAKVGIQNYQQTMMGENE"
     gene            1098..2024
                     /gene="murI"
                     /locus_tag="VKJ77_23065"
     CDS             1098..2024
                     /gene="murI"
                     /locus_tag="VKJ77_23065"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HMC48217.1"
                     /translation="MPFDALHSAVSPAVSPSPEALGSSAPVAIFDSGLGGLSVLRAVR
                     AALPDERLIYVADSLYAPYGERDDDFIADRTLAIGEWLVSQGAKTLVVACNTATSQSI
                     AQTRERLPIPVIGVEPGIKPAALTSQTRVVGVLATAVTLRSARFQALAERHTSDCHFI
                     LQPGHGLVQAVERCDTNSPELVALLRSYVQPMLDANADTLVLGCTHYPFLDQAIRSIS
                     GDRLTLIDTSIAIARQLERQLESFGLRAAPAQAQGQAQNQAQAIELPRFYSTSDGQSL
                     RQLAASLLGLDVTVERVVIPSRRTLALESDPV"
     gene            2291..2527
                     /locus_tag="VKJ77_23070"
     CDS             2291..2527
                     /locus_tag="VKJ77_23070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011885486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HMC48218.1"
                     /translation="MIVCVCKSVSDRKIRASIADGVATFDELQFELGVAMCCGKCEET
                     VRDVMLQSGCASHCGSRGDQHQAVPLTFYERKAA"
     gene            2869..3645
                     /locus_tag="VKJ77_23075"
     CDS             2869..3645
                     /locus_tag="VKJ77_23075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HMC48219.1"
                     /translation="MPSPLISPGNSAAALNAHSSRSIESSGLNPSVIAASVAVVAIHV
                     GLLAVVLTLRNEPPPRPIESKTITAELISPAPPQPVAAPVAIQSTPVPPPPKPVPPKP
                     QPKAKPVVQPHVKAVPTPLPETTAPSPVAAAAPEPAPAPPSPPVAAAPAAAAPAIGRP
                     TMELNAPKDVAHLECNIAMPDYPALSRRRGESGTALVKFVVGLTGKIENIELKKSSGS
                     SRLDDAALDAMSSSACKPYKEDGVAIRAAYSQPFVFGLND"
BASE COUNT          789 a         1143 c         1047 g          742 t
ORIGIN      
        1 agtcgttggc ccggcagggc ccaccacggc cacacgcatg gacaagttca ccgacttgat
       61 gctgtcgcag accggcctga tttcgatgat cggcaaggca gagcgcggcc cggttgccat
      121 cgaggcgatc aagaagcaca aggccgcgta catgatggca gtgggcggcg cggcgtacct
      181 ggtgtcgaag gcgattcgcg gcgcggaggt cattgcgttc gaagacctgg gcatggaagc
      241 catctacgaa ttcgacgttc aggatatgcc ggtcaccgtt gctgttgatt cgaccgggac
      301 ctccgttcat cagaccgggc cgaaggaatg gcaagcaaag atcggcaaga ttccggtcgc
      361 aacggtttaa actatcagct tagcaataag ggctaaaaga gccgggccgt gtgaatgaac
      421 cacggcccgg ctctttcatt ttcgggcttt ttcgagctat tccgcagaga actgttttca
      481 ttctcattcc gctgcgtgga aatacgaaat ctccgctaaa tagcggggaa aacaccattt
      541 ttcatcttgg ctttttaaac ttgagcggtt atgtttgaaa gctgaaacgc ccacacaagg
      601 aaataacatg caaggcgata tcaaagccct cgaatacctc aatcagcagc tgaagaacga
      661 gctgactgcg atcaaccagt acttcctgca tgcacgcatg tacaagcact ggggcctgga
      721 aaagctcggc aagcatgaat acgacgaatc gatcggcgag atgaagcatg ccgactggct
      781 gatccagcgt attttcatgc tcgacggcct gccgaacctg caggacctgc acaagctgct
      841 gatcggtgaa gagaccgaag aaattctcaa gtgcgacttg aagctcgaac agatttcgca
      901 gagcacgtgc aaagaagcca tcgcgtattg cgagtcggtt cgcgatttca tctcgcgtga
      961 aatctttgtg aagattctcg acgatacgga agaacacatc gactggctgg aaacgcagat
     1021 cgatctggta gcgaaggtcg gcatccagaa ctatcagcaa accatgatgg gcgagaacga
     1081 gtaaactacc ggccacaatg cccttcgacg cccttcattc agcggttagc cccgctgtca
     1141 gtccctcccc cgaggcgctc ggttcgagcg cgcccgttgc tattttcgat tcgggcctcg
     1201 gcggtttgtc cgtgttgcgc gcagtgcgcg ccgccttgcc ggacgagcgg ttgatctacg
     1261 tggcggattc gctgtacgcg ccgtacggtg aacgcgatga cgactttatt gccgaccgga
     1321 cgctcgcgat cggcgaatgg ctggtgtcgc agggcgcgaa gacgctggta gttgcatgca
     1381 acacggcgac gtcgcagtcc atcgcacaaa ctcgcgaacg cttgcctatt cccgtgatcg
     1441 gcgtggagcc gggcatcaag cccgcagcgc ttacgtcgca aacgcgtgtg gtgggcgtac
     1501 tggcaacagc cgtcacgtta cgcagcgcgc gctttcaagc gctcgctgag cgccatacca
     1561 gtgattgcca cttcatcttg cagccggggc acggcctcgt ccaggcggtg gaacgctgcg
     1621 acacgaactc acctgaactc gttgcgctgc tgcgaagcta tgtgcaaccc atgctcgacg
     1681 ccaacgccga cacgctggtg ctcggctgca cgcactaccc cttccttgat caagccatcc
     1741 gctccatttc cggcgaccgg ctcacgctga tcgatacaag tatcgcgatt gcgcggcaac
     1801 tcgaacggca actggaatcg tttggactgc gcgcagcgcc cgcccaagct cagggtcaag
     1861 cgcagaatca agctcaggca atcgaattgc cgcgctttta ctccaccagc gacgggcagt
     1921 ctttacgaca actcgcagcg tcgctgctcg gactggacgt gaccgttgag cgcgtcgtaa
     1981 tcccttcgcg gcggacgctg gcactggaat ccgatccggt ctgagactgc ggatccgggc
     2041 tgctttcgaa cgatcacgag ctgcaccgcc cctctccaag ccataaaaac ccgctttagt
     2101 gactaaaaag ccccttccgc gcacgcggtt tcagtttttt acataagcgc ggcgccttgt
     2161 gcgacaagcc tctgcgcccc ggcccttttt cccgtccgtc gcacatcgaa aaaaaccgtt
     2221 cacccctatt gccaaccttc ccataaggaa tgataataat tcgcattaac gttagctatc
     2281 gcggttaatc atgatcgtct gtgtgtgcaa gtcagtgtcg gacagaaaga ttcgcgcctc
     2341 gattgcggat ggcgtcgcta ccttcgacga actgcaattc gaactgggtg ttgccatgtg
     2401 ctgcggcaaa tgcgaagaaa ccgtgcgcga cgtcatgttg caaagcggtt gcgcgtcgca
     2461 ttgcggcagt cgtggtgatc agcatcaggc ggtgccgctg acgttctacg aacgcaaggc
     2521 cgcttaagca cgctcccggt caacggggat tcgcctggtg ctgaacacca cgaatcgctg
     2581 ccgtgttatt gcaatgacta cgcaacaact ccgacgcgcg gttttcaagc cgatcgtcac
     2641 gcgtcgccag gtgtaaatcg cagtccccgc ttctccgccc gcaagccacg tcacattgag
     2701 ccagcccgcc aacccccgtc caaggaggga atgatggaat tgctgatcgg tttcgtggcc
     2761 acgctgttta tttctctgct catctttcga aaatgaagtc ctccagtctc atatgctgca
     2821 tgggctttcg ccgttcgtac ggcgtcgccg ccgtacaacc acgctgatat gccgtctccc
     2881 ctgatctcgc ccggcaattc ggctgcggcg cttaacgctc actcttcccg ttcgatcgaa
     2941 tcctcaggcc tcaatccgag cgtgattgcc gcaagcgtcg ccgtggtggc gattcacgtg
     3001 ggcctgctgg ccgtcgtgct gaccctgcgt aacgagccgc cgccgcgccc gatcgaatcg
     3061 aagacgatca ccgccgaact gatcagtccc gctccgccgc aaccggttgc agcgcctgtg
     3121 gcgattcagt cgacgcccgt tcctccgccg ccgaaaccgg ttccaccgaa gccgcaaccg
     3181 aaggctaagc ccgtcgttca gccgcacgtg aaggccgtcc ccacgccgtt gccggaaacc
     3241 acggcgccct cgcctgtggc ggcagccgcg cctgagcccg cgcccgctcc gccttcaccg
     3301 cctgtcgcgg cagcgccggc cgccgcggcg ccggctatcg ggcgtccaac catggagctc
     3361 aacgcgccga aggacgtcgc gcatctcgaa tgcaacatcg cgatgccgga ctatccggcg
     3421 ttgtcgcggc gtcgcgggga atcggggacg gcgctggtga agttcgtcgt cgggctgacg
     3481 gggaagatcg agaacatcga actgaagaag agcagcggtt catcacgtct ggatgacgcc
     3541 gcgctcgatg ccatgagctc aagcgcatgc aagccctaca aggaagacgg cgtggcgatc
     3601 cgcgctgcgt attcccagcc gttcgtattt ggattgaacg actagcgcca cagtcgggac
     3661 cgctccaagg aacactgaat aacacaaaaa aattcgacca aatttctaga tatctacagg
     3721 a
//
LOCUS       DATGBK010001645         1649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_43029, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001645 DATGBK010000000
VERSION     DATGBK010001645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43029"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1097
                     /gene="murC"
                     /locus_tag="VKJ77_23080"
     CDS             <1..1097
                     /gene="murC"
                     /locus_tag="VKJ77_23080"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013434076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HMC48220.1"
                     /translation="GIAIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLISAGANAR
                     LGTGDFIVAEADESDASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLP
                     FYGIAVLCVDDPNVREILPFVSKPIIRYGLSAEAQVRAVNVEARDGKMHFTTLREDAT
                     PLDIVLNLPGTHNVQNALAAIAIATELEVSDAGIQRALHEFTGVGRRFQRYGEVNVKA
                     SEGGAYTLIDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVRVL
                     STVDALVLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVESVDEMPDAIATLARN
                     GDVVITMGAGSIGGVCARLTTQVQDSKASK"
     gene            1094..>1649
                     /locus_tag="VKJ77_23085"
     CDS             1094..>1649
                     /locus_tag="VKJ77_23085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HMC48221.1"
                     /translation="MTSNATSNVSATAIDPKVFGKVAVLLGGETAEREVSLNSGRLVL
                     QGLRDAGIDAHPFDPAERPLAELKSEGFARVFIALHGGYGENGQLQGALDFYGIKYTG
                     SGVLGSALGLDKFRTKLVWQQTGVPTPPFEVVMRGDDYEAAAQKIIPKLGLPLFVKPA
                     SEGSSVAVIKVKSAKTLVPALIEAA"
BASE COUNT          322 a          448 c          558 g          321 t
ORIGIN      
        1 agggcatcgc gattgccggc acgcatggca agaccacgac tacgtcgctg gtggcaagcg
       61 tgctggctgc aggaggactc gatccgacct tcgtgatcgg cggccgcttg atcagcgcgg
      121 gcgcgaatgc gcggctgggg acgggcgatt tcatcgtggc ggaagccgac gaatcggatg
      181 cgtcgttcct gaatcttttc ccggtgatcg aagtcattac gaacatcgac gccgatcaca
      241 tggacaccta cggccacgac ttcgcgcggc tgaagcaggc gtttatcgaa ttcacgcatc
      301 ggctgccgtt ctatggcatt gcggtcctgt gcgtggacga tccgaacgtg cgtgaaatcc
      361 tgccgttcgt gtcgaagcca atcatccgat acggcctgag cgccgaagcg caagtgcgtg
      421 cggtgaacgt ggaagcgcgc gatggcaaga tgcatttcac gacgctgcgt gaagacgcga
      481 cgccgttgga catcgttttg aacctgccag gtacgcacaa cgtacagaac gctttggctg
      541 caatcgcaat tgcgactgaa cttgaagtct cagacgccgg tatccagagg gcactccatg
      601 aattcacagg cgtgggccgg cgttttcagc gctacggcga agtgaatgta aaagcgtccg
      661 aaggcggtgc gtacacgctg attgacgact acggccatca cccggtcgaa atggctgcga
      721 cggttgcggc ggcgcgcggt gcatttcctg gtcggcgtct cgtgctcgcg ttccagccgc
      781 atcgatacac gcgcacgcgc gattgcttcg aagacttcgt tcgagtgcta tccacggtcg
      841 acgcactcgt gctgaccgag gtctacgcgg caggcgaagc gccgatcgtc gccgccgatg
      901 gccgcgcgtt agctcgcgcg cttcgtgtgg cggggaaagt ggagccggtg tttgtcgaat
      961 cggtggatga gatgccggac gcgattgcca cgttggcacg caatggcgat gtagtgataa
     1021 cgatgggcgc cggttctatc ggcggcgtat gcgctcggtt gacgacgcaa gttcaggatt
     1081 caaaggcttc gaaatgacga gcaacgcgac gagtaatgtg agcgcaaccg caatcgaccc
     1141 gaaggtgttc ggcaaagtgg ccgtgctgct tggcggggaa accgctgagc gcgaggtatc
     1201 gctgaattcg ggacgtctcg tgctgcaggg attacgcgat gcgggcatcg acgcgcatcc
     1261 gttcgatccg gcggaacggc cgttggccga gttgaagtcc gaagggtttg cgcgtgtgtt
     1321 tatcgcgttg catggcgggt atggcgagaa cggccagttg cagggcgcgc tcgatttcta
     1381 cggcatcaag tacacgggca gcggtgtgct gggttcggcg ctcggcctcg ataaattccg
     1441 cacgaagctt gtttggcaac aaaccggcgt gcccacgccg ccgttcgaag tcgtgatgcg
     1501 cggcgatgac tacgaagccg cggcgcagaa gattattccc aagctcgggt tgccgctgtt
     1561 cgtaaagccg gcgagcgaag gatcgagcgt tgccgtgatc aaggtgaaga gcgcgaaaac
     1621 gctggtgccg gcgctgatag aagcggcga
//
LOCUS       DATGBK010001646         2700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_204719, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001646 DATGBK010000000
VERSION     DATGBK010001646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204719"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VKJ77_23090"
     CDS             <1..397
                     /locus_tag="VKJ77_23090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020206258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein MobB"
                     /protein_id="HMC48222.1"
                     /translation="PGKDSARYRAAGAGEVLIASPYRYAIVRELHDAPEPPLADLVAR
                     LTPSDLTLVEGFTREVLPRLEVVRPEAGRDPLYLTDTAILAIATNDAPRLHDAPAIPL
                     LPLADVGRIGEFICKTVGLSLLDASTPDN"
     gene            435..2393
                     /locus_tag="VKJ77_23095"
     CDS             435..2393
                     /locus_tag="VKJ77_23095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014631547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pili methyl-accepting chemotaxis
                     transducer N-terminal domain-containing protein"
                     /protein_id="HMC48223.1"
                     /translation="MSDHPLHPVPPPALLATPFRYRLSTRIVALSGVALALVLSMIAG
                     TLWLSWQLEGAGAAINDAGSLRMRAGNVAIQLNEARAGRRADVNTQSALLDLTLADLK
                     SGDPARPLFLPATAEIHAQLDAVSQAWNDSLKQAITHDSSSFIDTPSLYLARLPAFVA
                     EADALVRMIERENARKTAWLRRWQMALAALACVGTIAIAYLLYAWFVMPVRRLERGLS
                     RIEQREFSARLPIESRDELGHLAHGFNRMASELQSLYRDLALRVTNKTAQLATRNGEL
                     VALYEMTSFLHGAHDVEVLCRGFLARVMRQFNADAGTVRVLAQEGDNLHVVVSEGLPA
                     PLLSAERCMSASTCVCGAAATGGLAVVRDLRMRQAVDSGPATHCDKAGFDAVAAFGIV
                     SHDLALGSFSLHFRGDRLVLPSETRLLDTLGKHLGTALQNHRLATAARQLAVAQERHL
                     VAQGLHDSIAQSLNFLKLQLHLLDDAASRDDMNEVREIAPLLRGGLEESYEDVRELLV
                     NFRTKFATGNLRDAVDETVTRFERQTDALVRLDYDEAGGLPLPPDQQLQVLFILQEAL
                     SNVRKHALATQVHIALKNARDFELTIQDNGDGYDPANIASRGEAHVGFHIMRERAARL
                     GAQLRLDSEPGKGARVHLLLPVSERQAA"
     gene            2390..>2700
                     /locus_tag="VKJ77_23100"
     CDS             2390..>2700
                     /locus_tag="VKJ77_23100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004192421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC48224.1"
                     /translation="MTIRILLIDDHTLFRSGVRALLQRQPDFEVVDDAADGIEGIKRA
                     KQHRPDVVLLDLNMPGLSGIETLQLLQQDLPDTAVIMLTVSEDVDELTRALREGACGY
                     LL"
BASE COUNT          500 a          863 c          808 g          529 t
ORIGIN      
        1 gcccggcaag gacagcgcac gttatcgcgc ggccggcgcg ggcgaggtgc tgattgcctc
       61 accgtacagg tacgccatcg tgcgcgaact gcatgacgcg cccgaaccgc cgctggcgga
      121 tctggtcgcg cggctcactc cctccgacct gacgctggtg gaaggcttca cgcgcgaagt
      181 cttgccacgt ctggaggttg tgcgtcccga ggcgggccgg gacccgctgt atctgaccga
      241 tacggcaatc ctcgcgatcg ccaccaacga cgccccgcgt cttcatgacg cacccgcgat
      301 cccgcttctg cctctggcgg acgttggccg tattggtgag ttcatatgta aaacagtcgg
      361 actctcacta ttggacgcca gcacgccgga taattagcgc cctttgcatt ccggtcgcgc
      421 aagcacgcag ctccatgtcc gatcatccgc ttcatccggt ccctcccccg gccctgctcg
      481 ccacgccgtt ccgttaccgg ttatccacgc gcattgtcgc gttgtccggc gttgcgctgg
      541 cgctagtcct ttccatgatc gcgggcaccc tctggctttc gtggcaactc gaaggcgcgg
      601 gcgcggcgat caacgatgcc ggcagcctgc gtatgcgggc cgggaacgtc gccattcaac
      661 tcaacgaagc acgagccggt cgccgagccg acgtgaatac gcaaagcgcc ttgctcgatc
      721 tcacgctggc cgatctgaaa agcggagacc ccgcccggcc gctattcctt cctgccacag
      781 ccgagatcca cgctcagttg gatgccgtgt cgcaggcctg gaacgactcg ttgaagcagg
      841 caatcacgca cgactcgtca agtttcatcg ataccccctc gctgtatctc gcccggctgc
      901 ccgcattcgt tgccgaagcc gatgcactgg tccgcatgat cgaacgcgaa aacgcgcgca
      961 agacagcttg gctgcgacgc tggcaaatgg cccttgcggc actcgcatgc gtaggtacga
     1021 tcgcgatcgc gtatctgctc tacgcgtggt tcgtcatgcc cgtaagacgt ctggagcgcg
     1081 gtctgtcccg gatcgaacaa cgcgaattca gtgcacgttt gccgatcgag tcacgcgacg
     1141 agctcggtca tcttgcacat ggtttcaacc ggatggcgag cgaactgcaa agcttgtacc
     1201 gggacctggc gctacgcgtg acaaacaaaa ccgcgcaact tgccacacgg aacggcgagc
     1261 tggtcgcgct ctacgagatg acctcattcc tacatggtgc gcatgacgtt gaagtcctgt
     1321 gccgtggctt tctcgcacgt gtcatgcgcc agttcaatgc cgacgcaggc accgtccgcg
     1381 tcctcgcaca agagggggac aacctgcacg tggtcgtttc cgaaggttta cccgcgccac
     1441 ttctgagcgc ggagcgctgc atgtcggcaa gcacctgcgt gtgcggcgcg gcagccaccg
     1501 gcggcctcgc ggtcgtgcgc gatctacgca tgcggcaagc ggttgatagc ggtcctgcga
     1561 ctcattgcga caaggcgggt ttcgatgcgg tcgcggcctt cggtatcgtc tcgcatgatc
     1621 ttgcgctagg ttcgttctcg ctgcactttc gcggcgaccg cctagtgctg ccatcggaaa
     1681 cgcgcctgct tgacacgctc ggcaaacatc tgggcacggc tttgcaaaac catcgtcttg
     1741 ccacagccgc gcgtcagctt gcggtcgcgc aggaacgtca cctggtcgcg cagggactgc
     1801 atgacagcat cgcgcagagc ctgaatttcc tgaagctgca actgcattta ctcgatgacg
     1861 ccgcaagccg cgacgacatg aacgaagtgc gcgagatcgc gccgttgtta cgcggcggtc
     1921 ttgaggaaag ttatgaggat gtgcgtgaac tgctcgtcaa tttccgcacg aagttcgcta
     1981 ccggcaacct tcgcgacgct gtggacgaga cggtaacgcg cttcgaacgg caaacggacg
     2041 cactagtcag actcgactac gacgaagcgg gcgggctgcc cttgccgcct gaccagcagc
     2101 tacaggtgct gttcattctt caggaggcgt tgtcgaacgt tcgcaaacat gcgctggcta
     2161 cgcaggtcca tatcgcgctc aagaacgccc gcgattttga actgacgata caagacaacg
     2221 gcgacggtta tgatcccgcc aatatcgcca gtcgcggcga ggcccacgtc ggttttcaca
     2281 tcatgcgtga gcgtgcggcg cggctcggtg cacaattgcg actggacagc gaacctggca
     2341 agggcgcacg cgttcatctc ctgctgcccg tcagcgaacg gcaggcagca tgaccatccg
     2401 cattctttta atcgacgacc acacgctgtt tcgctccggt gtgcgcgcgt tattgcagcg
     2461 tcagcccgac ttcgaagtcg tagatgacgc tgccgacggt atcgaaggga tcaagcgcgc
     2521 gaagcaacat cgcccggacg tggtcctgct cgacctgaac atgccggggt tgtcgggtat
     2581 cgaaacgttg cagttgctcc agcaggattt gccggacacc gcagtcatca tgctgaccgt
     2641 gtcggaagat gtggatgaac tgacccgcgc gctgcgtgaa ggtgcgtgcg gctatctgct
//
LOCUS       DATGBK010001647         2984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_250511, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001647 DATGBK010000000
VERSION     DATGBK010001647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250511"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..1108)
                     /locus_tag="VKJ77_23105"
     CDS             complement(71..1108)
                     /locus_tag="VKJ77_23105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-idonate 5-dehydrogenase"
                     /protein_id="HMC48225.1"
                     /translation="MLAAVLHEPKRLRIDEVDAPQPQPGQVQIRVRAGGICGSDLSYY
                     FKGKSGDFAVREPFVLGHEVAGEIAALGEGVSGLRVGQRVAVNPGLNCGECRFCVKGM
                     TNHCLNMRFMGSASTFPHMQGMFRQYIAVAARQCVPVPDALDFAQASMAEPLAVAMHA
                     LRHAGSLVGAQVLVIGCGPIGCILLSVARRAGAHRLVALDLADKALQMAATLGADQTV
                     LATDQAQVEAWSQSRGTFDVVIEASGSPAGLDTALRAARAGATVIQVGNLPAGQSLVA
                     ANLVMAKELRYQGSFRFTDEYAVAAEEIATGKIDLSPLMTHVFPLADANHAFEVAHDR
                     NQSMKVHLQFD"
     gene            complement(1154..2524)
                     /locus_tag="VKJ77_23110"
     CDS             complement(1154..2524)
                     /locus_tag="VKJ77_23110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48226.1"
                     /translation="MADQNSSAMLRRVAFASTIGTAAEYYDFFVYGTAAVLVFGAKFF
                     PSSDPLIGTLAAFATYAVGFIARPLGGIVFGHFGDRIGRKKALIVTILIVGLGTFLIG
                     LLPDYSQIGIWAPAALILIRVLQGFGVGGEQAGAVLLTAEYAPPPKRGFFASLVQLGA
                     PAGFLIPAGIFAILTATLTHEQLLDWGWRLPFLGSIVLVVVGLYIRLRTEESPVFAEM
                     RKTQAVESRPVVEVVRQFGPTILKGVGAKLIEACTFAMYTMIVLAYGRVHGISESLLL
                     QTIIVAVTLELIAIPLAGALSDRIGRRATFIAGSLLQVLLVVPLFHALDSGSRLAIQT
                     VMILAITVGHSLCYAPQASLFPELFPARVRCSGIALIWQIGSLIGSGVLGLVAVKMLQ
                     MTGGSSVGLIVYVMALGIVSTLCIYLLPETAPLRRGGDLHDWGTPSLATSPRESHSSP
                     VFAARR"
     gene            complement(2587..>2984)
                     /locus_tag="VKJ77_23115"
     CDS             complement(2587..>2984)
                     /locus_tag="VKJ77_23115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007577226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HMC48227.1"
                     /translation="QLIEEQLIDYIRATLTHAGGITHLKRIADFASLYQVRTGCHGPS
                     DLSPVCMGAALHFDLWVPNFGVQEYMGFPKEALDVFPHAWTFDRGTMHPGEAPGHGVD
                     IDEELAARYPYDPAYLPVARLEDGTLWNW"
BASE COUNT          645 a          942 c          896 g          501 t
ORIGIN      
        1 tctgaacatg aatgtctcct ggaatacgct tctttatgat cgggcgctcg ggcaatgcgg
       61 tgatagggat tcagtcgaac tgcaaatgca ccttcatcga ctggttgcgg tcatgggcca
      121 cttcgaacgc atggttcgcg tctgcaagcg gaaagacatg cgtcatcaac ggactcaggt
      181 cgatcttccc tgtggcgatt tcttcggcgg cgaccgcgta ttcatcggtg aaacggaacg
      241 atccctggta acgcaattcc ttcgccatca cgagattcgc cgcgaccagc gactgccccg
      301 ccggcaggtt gcccacctgg atcacagtgg cccccgcacg cgcggcccga agcgcggtgt
      361 cgagcccggc agggctgcca gatgcctcga tcacgacgtc aaaggtaccg cgcgattgag
      421 accacgcttc gacctgcgcc tgatcggtgg cgagcacggt ctgatcggca cccagcgtag
      481 cggccatttg tagcgctttg tcggcgaggt caagtgcgac gagacgatgc gccccggcac
      541 gccgcgcgac cgatagcaag atgcagccga taggtccgca gccgatcacg agtacctgcg
      601 cgccgaccag cgatcccgca tgccgcagcg cgtgcattgc aacggcgaga ggctcggcca
      661 tcgacgcctg cgcgaagtcg agtgcatcag gcacaggcac gcattggcgg gcggcaaccg
      721 caatgtattg gcggaacatg ccctgcatgt gagggaacgt cgaggcgctg cccatgaagc
      781 gcatgttcag gcaatggttg gtcatgccct tcacgcaaaa ccggcactcg ccgcagttca
      841 gacccgggtt gacggcaaca cgctgtccaa cgcgcaaacc actcacaccc tcccccagcg
      901 cggcgatttc acccgctact tcatgaccga ggacgaacgg ttcccggacc gcgaaatcgc
      961 cgctcttgcc cttgaagtaa tacgacaggt ctgacccgca gataccgcct gcgcgtacgc
     1021 ggatctgaac ctgacccggc tgtggttgag gcgcatcgac ttcgtcgata cgcaggcgtt
     1081 tcggttcgtg aaggacggct gcaagcatga gaagctccgt tgaatagtgt gcgtatcgaa
     1141 gcacagcgcg tggctatcgg cgcgcggcga aaacagggga tgaatgcgat tcgcggggag
     1201 acgtcgcgag tgacggcgta ccccagtcgt gaagatcacc gccacgacgc aaaggcgcgg
     1261 tttcaggcaa aagataaata cacagcgtgg aaacaatgcc cagtgccatc acgtagacga
     1321 tcagtccgac ggagctgccg cccgtcatct gaagcatctt cacggcgaca agtccgagta
     1381 cgccgctgcc gatcagcgag ccgatctgcc agatcagcgc gatgccgcta caacgcacac
     1441 gcgccggaaa gagttcggga aagagcgacg cctgcggcgc atagcaaaga ctgtggccga
     1501 ccgtaatcgc gagaatcatt accgtctgga tcgccaggcg actgccgctg tcgagggcat
     1561 gaaacagcgg cacgaccagc agaacctgca gcaggctgcc tgcaataaac gtggcgcggc
     1621 ggcctatccg atccgacagt gcgccggcaa ggggaattgc tatcagttcg agcgtgaccg
     1681 cgacgatgat cgtctgcagc aacaggctct cactgatacc gtgcacgcgg ccataggcca
     1741 gcacaatcat cgtgtacata gcgaacgtgc aggcctcgat cagtttcgcg ccgacaccct
     1801 tcaggatcgt gggcccgaat tgccggacaa cttccaccac cggccgcgac tcgaccgcct
     1861 gcgtcttgcg catctccgcg aagaccggtg actcttccgt gcgcaaccgg atatacaggc
     1921 ccacgacgac cagcacaatg ctgccgagga acggcagccg ccagccccag tcgagcagtt
     1981 gctcgtgcgt gagcgttgcc gtgaggatgg cgaagatgcc cgccggaatc aggaacccgg
     2041 cgggtgcgcc gagctgcacc aggctcgcga agaaaccccg cttgggcggc ggcgcatact
     2101 cggctgtcag caacacagca cccgcttgct ctccgccaac accgaaacct tgcagcacac
     2161 gaatcaggat caatgcagcc ggcgcccaga tgccgatctg cgaatagtca ggcagcagac
     2221 caatcaggaa cgtaccaagg cccactatca gtatggtgac gatcagcgcc ttcttgcggc
     2281 ctatgcgatc gccgaaatgc ccgaacacga tgccgcccaa tggccgcgcg ataaagccaa
     2341 cggcgtaggt cgcgaacgca gcaagcgtcc cgatcaacgg gtcgctgctg gggaaaaatt
     2401 tcgcgccgaa cacgagcacc gccgcggtcc cgtagacgaa gaaatcgtag tactcggcag
     2461 cggtgcctat cgtcgatgca aaggcgacac ggcgtaacat agcgctgctg ttctggtctg
     2521 ccattgcctg tctccttgtt attctgccga gcggttctgc caagcggttc tagtcagcgt
     2581 ccccgctcac cagttccaga gcgtgccgtc ttcgagtcgc gcgaccggca ggtaagccgg
     2641 gtcgtaggga taacgcgccg cgagttcttc gtcgatatcc acgccgtgac cgggcgcctc
     2701 gccgggatgc atcgtgcccc gatcgaaggt ccacgcgtgc gggaaaacat cgagcgcttc
     2761 cttcgggaaa cccatgtact cctgcacgcc gaagttcggc acccacaggt cgaaatggag
     2821 cgctgcgccc atgcagaccg gcgacagatc tgaggggccg tggcaaccgg tacgaacctg
     2881 ataaagcgac gcaaaatctg caatgcgctt gaggtgagtg ataccgcccg catgcgtgag
     2941 cgtggcgcga atgtagtcga tcaactgctc ttcaatcagt tgct
//
LOCUS       DATGBK010001648         7483 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_250522, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001648 DATGBK010000000
VERSION     DATGBK010001648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 7483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7483
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250522"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VKJ77_23120"
     CDS             complement(<1..184)
                     /locus_tag="VKJ77_23120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC48228.1"
                     /translation="MSFFLEVLVGGLLAGVMYSLVAIGFVLIYKASGVFNFAQGSLVL
                     FGALTFVSLVERHVAPW"
     gene            complement(232..1032)
                     /locus_tag="VKJ77_23125"
     CDS             complement(232..1032)
                     /locus_tag="VKJ77_23125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020206309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC48229.1"
                     /translation="MTSQEQPLPFARQALLSLDRISLSFGGVKAITDISFDVHQGEIC
                     ALIGPNGAGKSSLLNVINGVYRPQQGTVRFDGTQGRRMSPHDAARRGIARTFQNIALF
                     RRMSVLDNVLTGRNLHRGSTWVEQTFRVGRAQRDEARQRRYAEIVIEALDLQRVRHSV
                     VGTLSYGVQKRVELARALAAEPRLLLLDEPMAGMNAEEKRAMAGFIVDANEQFGVTVV
                     LIEHDIGVVMDLSDHIVVLDYGKKIADGIPADVRADPAVLAAYLGTRH"
     gene            complement(1029..2162)
                     /locus_tag="VKJ77_23130"
     CDS             complement(1029..2162)
                     /locus_tag="VKJ77_23130"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC48230.1"
                     /translation="MAAPGAELPDTLPAWLAEQARHCPHATALRHKRLGRWEQLSWHA
                     LAEKVEALAAGLAARDFGAGDALLLVSQPREEALCLSLAAQWRGGVAVPVEPSVSDQA
                     LGRIVRHLAPLFTFADDDQQVDRLLALSQWVIDANPRGLRPHPNADVIEYTTLASPDK
                     GVKATARPDHDAFIFYRDDAGHGIEEQRITHTTLIREARLVAAKEHLHPADDAFAARA
                     FATAAQARYLVAPWLLTGFRLNFPESLETRDNDRRELAPTVVAGTRETYGRVARLVDA
                     RLPGANSVRRRLLDRLSDEQSSWLLRTAAWWLVARPLREVIGFRRTHAALVAGAALDG
                     DAARLFNALRIDVRTWPDDGQWQRLSEHVLTAQQAADVQGQPA"
     gene            complement(2164..3276)
                     /gene="sfnG"
                     /locus_tag="VKJ77_23135"
     CDS             complement(2164..3276)
                     /gene="sfnG"
                     /locus_tag="VKJ77_23135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfone monooxygenase SfnG"
                     /protein_id="HMC48231.1"
                     /translation="MSDRQDEKQDALKFAYWVPNVSGGLVVSTIEQRTDWSVEYNQKL
                     AQTAEKAGFDYALSQIRFTAGYGADNQHESVSFSQALLHATTKLKVLAAILPGPWSPA
                     VVAKQIATIDHISKGRIGINVVSGWFKGEFTAIGEPWLEHDERYRRSHEFIEALKGIW
                     TQDNFTFRGDFYRFNNYTLSPKPIQKPHPEIFQGGSSRAARDNAASVSDWYFTNGNTP
                     ENLKLQIDDIQAKAAVNNHKVRIGVNAFVIARDTEEEARAVLADIIKHAHVEAVHAFG
                     DAAKQAGSASPEGEGNWAKSTFEDLVQYNDGFRTNLIGTPRQIAERIVELKSVGVDLV
                     LAGFLHFIEEVEYFGQRVLPLVRELEEAAQLEAKAA"
     gene            3638..4873
                     /locus_tag="VKJ77_23140"
     CDS             3638..4873
                     /locus_tag="VKJ77_23140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC48232.1"
                     /translation="MTQLPPVALSVGADYESVASRFRPIFERIAEGAVERDQLRTLPY
                     DQIAELKQAGFGALRVPVSHGGAGVSVKQLFRLLIELGTADSNLPQALRGHFAFVEDV
                     VNAPASAERDEWFARFVRGDLFGNAWTEVGNVALGSVNTQVAKQGDRWVLNGEKYYST
                     GSIFADWIDVYAQRAEDGSDVIVAVAAKQPGVTLSDDWDGFGQRTTGSGTTVFKDAVV
                     EPGHIVDFARRFKYQTAFYQLFHLATLAGIARAAELDAAAEVRARKRIYSHGNAPHVS
                     QDVQIQQVVGEIAAWAYAAEAIALRATEPAQRAYEARFADDIDAEKHFNIEAEIESAK
                     GQIVATELALRASTHLFDALGASAIGGGKALDRHWRNARAVSSHNPIVYKAKLVGDWS
                     INQKEPIYVWQIGAGPGAV"
     gene            complement(4992..5903)
                     /locus_tag="VKJ77_23145"
     CDS             complement(4992..5903)
                     /locus_tag="VKJ77_23145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011356033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48233.1"
                     /translation="MTSLSAVNLNRLVVFAAVVEAGSLTAAADRLGIAKTMVSTHMQR
                     LEAEVGATLLMRTTRRVSVTEAGRTFYEASRQILSATEEAISALAQESGVLRGTLRIA
                     TPIDYGASVVAPMLVALQQRHPELKVELVSADRQVDLVAEAVDVAIRLGRLADSSHRA
                     VKIGGFVKWLVASPAFVARWGKPTTLEAVAKLPFVGMSALQKPLVAPLESTRGGKRTV
                     RFSSGFLADTAPTCRAATLAGGGVAYLTNFSIGEDVEAGRLVRLLPAWSSPPAGIHAI
                     FPSARYPVPKVRVFIDALKAHLETNGG"
     gene            6020..6670
                     /locus_tag="VKJ77_23150"
     CDS             6020..6670
                     /locus_tag="VKJ77_23150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012217558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HMC48234.1"
                     /translation="MPTQPKPLQPIRLHTTLLSGHGHRAKLFLTLLDLPFTTIELNMK
                     AGDNRKPAHLALNPFGEVPVIEDGDVVLTDSNAILVYLARKYGDPSWLPEDPVGAAAV
                     QRWLSLAAGKIAYGPCAARLVTVFGAPKDYATAKKMAEDLFAIIDPEFRDKPFAVGQT
                     PTIADIAAYSYIAHAPEGGISLEPFPHLRAWLKRVEALPRFLPMPATKAGLLAEAT"
     gene            6713..>7483
                     /locus_tag="VKJ77_23155"
     CDS             6713..>7483
                     /locus_tag="VKJ77_23155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006486151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HMC48235.1"
                     /translation="MSTLAPARVAAPPSGWRAVESPFHAGELAAQERAGVRERMDVDA
                     RRGIRDYMPEQHRRFFAEQPFMVLGGVDETGQPWATLRVGAPGFISTPDEHTLRISGR
                     SLAGDPLARTWQVGSVLGGLGIQPATRRRNRVNGVITSIDNQAITVAVSQSFGNCAKY
                     IQSRTPVEFDVEEGTQLPLISNRLNDADRALLARADTFFVASANTSSEAGMGRGADVS
                     HRGGKPGFIRIDDDNTLTTPDFSGNLFFNTIGNLMHDQI"
BASE COUNT         1520 a         2336 c         2174 g         1453 t
ORIGIN      
        1 gccagggcgc aacgtggcgt tcgaccaggc ttacgaatgt cagcgcgccg aacagcacga
       61 gcgagccctg cgcaaagttg aacacgcccg acgccttgta gatcaatacg aagcctatcg
      121 cgaccagcga atacattacg ccggccaaca gacctccgac cagcacttcg aggaagaaac
      181 tcatggatgc agcctttggg taaatcggag aagtaagcga acgcagcaag cctagtgacg
      241 cgtgcccaga taagccgcca gcacggcggg atctgcacgc acatcggcgg gtatcccatc
      301 tgcaatcttc ttgccgtagt cgagcacgac aatgtgatcg gagagatcca tcaccacgcc
      361 tatgtcatgc tcgatcagca cgaccgtcac gccgaattgc tcgttagcat cgacaatgaa
      421 accagccatc gcgcgtttct cttcggcgtt catgccggcc atcggttcat cgagtaacag
      481 caaacgcggc tcggctgcca acgcgcgggc aagttcaacg cgtttctgaa cgccatacga
      541 cagcgtgccg acaacgctat gacgcacgcg ctgcaggtcc agcgcttcga tcacgatctc
      601 cgcgtagcga cgttgtcttg cttcgtcgcg ttgagcccgg ccgactcgaa aggtttgctc
      661 gacccacgta ctgccgcgat gcagattgcg ccccgtcaat acgttatcga gcacgctcat
      721 gcgccggaac aacgcgatgt tttgaaacgt gcgtgcaatg cctcgacgcg ccgcgtcatg
      781 cggactcatg cggcggccct gagtgccgtc gaaacgcaca gtgccctgct gcggccggta
      841 gacgccgttg atcacgttga gcagcgaact cttgcctgca ccgttcgggc caatcaacgc
      901 gcagatctcg ccttgatgga cgtcgaagct gatgtcagtg atggccttga caccgccgaa
      961 cgataacgaa atccggtcga gtgaaagcag cgcttggcga gcgaatggta gaggctgttc
     1021 ttgagacgtc acgcaggttg tccttgtaca tcggcagctt gctgagccgt cagaacatgc
     1081 tcggacaaac gctgccattg accatcgtcc ggccacgtgc ggacatcgat tcgcaacgcg
     1141 ttgaacagac gcgctgcgtc gccgtccaga gcggcgccgg cgaccagtgc ggcatgggtt
     1201 cgcctgaagc cgatcacctc gcgcaacggc cgcgcgacca gccaccatgc agccgtgcgc
     1261 agcagccatg aagactgctc gtcgctcagg cgatcaagca agcggcgccg gaccgaattc
     1321 gcgccgggca gcctcgcatc gacgagccgc gcgacgcggc cataggtctc cctcgttcct
     1381 gcgaccactg taggcgcgag ttcacgccgg tcgttatcgc gagtctccag cgattcggga
     1441 aaattcaggc gaaagccggt caacagccac ggcgcaacga gataacgcgc ctgcgccgct
     1501 gtcgcaaatg cacgggccgc gaacgcatca tcggccggat gcagatgttc ctttgccgcg
     1561 accagccgag cctcgcgaat cagcgttgtg tgagtaatgc gctgctcttc gatgccgtgc
     1621 ccggcgtcat cacgataaaa gataaatgcg tcatgatcgg gtcgtgcggt ggctttgacg
     1681 cccttgtccg gagacgctaa cgtggtgtac tcgataacat cggcattcgg atgcggacgc
     1741 aggccgcgcg ggtttgcgtc gatcacccac tgcgacaacg caagcaagcg gtcgacctgc
     1801 tggtcatcgt cggcgaaggt aaaaagcggc gccagatgcc gcacgatccg gccaagcgct
     1861 tgatccgata cggaaggctc gaccggcacc gcaacgcctc cgcgccattg cgcggcgagc
     1921 gataaacaca gcgcctcttc gcgcggctgg ctaacgagca gcagcgcatc gcccgcaccg
     1981 aaatcacgcg ccgccaggcc tgccgcgagc gcctcgacct tctcggccag cgcgtgccag
     2041 cttagctgct cccatcggcc cagccgctta tgcctcaacg cggtcgcgtg agggcaatgc
     2101 ctcgcctgct ccgcaagcca tgcgggcaaa gtgtcaggga gttccgcacc tggagccgcc
     2161 atctcacgca gcctttgctt cgagttgcgc agcctcttca agctcccgca cgagcggcaa
     2221 gacacgctgc ccgaaatact cgacctcttc gatgaagtgc aggaagccgg ccagcaccag
     2281 atccacaccc accgacttaa gctccacgat ccgctcggca atttggcgtg gcgtgccgat
     2341 caggttggtg cggaagccat cgttgtattg caccaggtct tcgaatgtcg atttggccca
     2401 gtttccctcg ccttcaggcg atgcgctgcc ggcctgtttt gcggcgtcgc cgaatgcatg
     2461 aaccgcttcc acatgggcat gcttgatgat gtccgcgagc acggctcggg cttcttcctc
     2521 ggtatcgcgg gcgatcacaa acgcattcac gccaatgcgc accttgtggt tattgacggc
     2581 ggccttggcc tggatatcgt caatctgcag cttgagattc tcgggcgtat tgccgttcgt
     2641 gaaataccag tccgaaacgc ttgcggcatt gtcgcgggct gcccgcgagc ttccgccctg
     2701 gaaaatttca gggtgaggtt tttgtatcgg tttcgggctc agcgtgtaat tgttgaaccg
     2761 ataaaaatcg cctcggaacg tgaagttgtc ttgagtccag atgcccttga gcgcttcgat
     2821 gaattcgtgc gaccggcggt agcgttcgtc gtgttcgagc cacggttcgc caatcgccgt
     2881 gaattcacct ttgaaccaac cgcttactac gttgatccca atccgcccct tggagatatg
     2941 atcgattgtt gctatctgct tcgcgacaac cgccggactc cacggtcccg gcaagattgc
     3001 cgcgagcact ttcagcttgg tggttgcgtg cagcaacgcc tgactgaacg acaccgactc
     3061 gtgttggttg tccgcgccat agcccgccgt aaagcggatt tgactgagcg cgtagtcgaa
     3121 gcccgctttc tctgcggttt gcgcaagctt ctggttgtat tcaacgctcc agtcggtgcg
     3181 ctgctcaatc gtgctgacta ccaggccgcc gctgacattg ggcacccagt atgcaaactt
     3241 tagcgcgtcc tgcttctcgt cctgcctatc gctcatgaca atctccttat taattagcat
     3301 accgattcac tgatgtcctg catcatcatt gcgatttcga ctcacggatc cagaatctat
     3361 ttcagccagc cgcggccacc caagcaattt attcagctat ctatatgtgc agcggccggc
     3421 ttagataagc agcagcaacg gaacccgacg ctgaaacagt ggtatcggcg caatgctgtt
     3481 gggaggcagc cgcgatgcgc attgaggcga taaacattgc ggaaaacgat ctaacgcggg
     3541 cggagtcgat gggctagatt tacaaatctg cgccctcgcg ccagctcgcc ctcaactcgc
     3601 ctttcatcgc ctttaatagc actcaaggat tttcgacatg acacaactgc cgcctgtcgc
     3661 gctatcggtt ggagccgatt acgaaagtgt cgccagccgc ttcaggccta tcttcgaacg
     3721 cattgctgaa ggcgcggtcg agcgcgacca gctcaggacc ctgccctatg accagattgc
     3781 ggagctcaag caagcgggtt tcggtgcatt gcgcgtgccg gtatcgcatg gcggtgctgg
     3841 cgtctccgtc aaacaactgt tccgcttgct gatcgaactc ggtaccgccg attccaatct
     3901 cccacaggca ttgcgtggcc actttgcttt cgtcgaggac gtagtcaacg cacccgccag
     3961 cgccgaacgg gacgagtggt ttgcgcgctt cgtacgcggc gacctgtttg gcaatgcatg
     4021 gacagaagtt ggcaacgtcg cgctgggcag cgtcaacacc caagtagcga agcaaggcga
     4081 ccgctgggtc ttgaacggcg aaaagtacta cagcacgggc agcattttcg cggactggat
     4141 cgatgtctat gcgcagcgcg ctgaagacgg cagcgacgtg attgtcgcgg tagccgcgaa
     4201 gcagccgggc gtgacgttaa gcgacgactg ggatggtttc ggtcagcgca ccacgggcag
     4261 cggcaccacg gtgttcaagg acgcggtggt cgaaccgggt cacatcgtcg acttcgcgcg
     4321 gcgcttcaaa tatcagaccg cgttctatca actattccat ctggcgacgc tggccggcat
     4381 cgcccgggcg gctgaactcg atgcagcagc cgaagtgcgc gcacgcaagc gcatctatag
     4441 ccacggcaat gcgccgcatg tcagccagga cgttcagatt caacaagtgg tgggagaaat
     4501 tgcggcctgg gcgtatgccg cggaggcgat cgcgttgcgc gcgacggaac cggcacagcg
     4561 ggcatatgaa gcgcgttttg ccgatgacat cgacgccgaa aaacacttca atatcgaggc
     4621 cgaaatagaa tcagcgaaag gacagatcgt tgcgacggaa cttgcgttgc gcgcctcgac
     4681 tcatcttttc gatgcgctgg gtgcatcggc cattggcggc ggcaaggcgc ttgatcgcca
     4741 ttggcgcaat gcacgcgcgg tctcgtcgca taacccgatt gtgtacaagg ccaaactcgt
     4801 tggcgactgg tcgatcaacc agaaagaacc catctacgtc tggcagatcg gcgcaggacc
     4861 gggagcggtg taagcgctag aacacttacg aaaccgcgcg gccccgcttg caacagataa
     4921 atactcaagc acgggatcgc gctttctggt tcaacgtgcg agcgaacaca accaacacac
     4981 ggcacatcag cctacccgcc gttcgtctcc agatgagcct tcagcgcatc gataaacaca
     5041 cgcaccttcg gcaccggata tcgtgccgaa ggaaagatgg cgtgaatgcc cgcgggcggt
     5101 gatgaccacg ccggcaacaa acgcaccagc cgtcccgctt caacgtcctc tccgatcgag
     5161 aaattcgtca ggtaggccac gccgccgccg gccaatgttg ctgcgcgaca ggtaggcgcg
     5221 gtgtcggcga gaaatcctga actaaagcgc acggtccgct tcccaccgcg tgtgctttca
     5281 agcggtgcga ccagaggctt ctgtaaagcg gacatgccga caaacggtaa tttcgcgact
     5341 gcttcgagtg tagtcggctt gccccatcgg gcgacaaacg caggactcgc gacgagccat
     5401 ttgacgaagc cgccgatctt caccgcgcga tggctcgaat ccgccagcct cccgagccgg
     5461 atcgcgacat cgaccgcttc tgcaaccaga tccacctgac ggtcggctga cacgagctca
     5521 accttcagtt ccggatggcg ttgctgcagc gcgacgagca tgggcgccac cacgctcgcc
     5581 ccatagtcga taggcgtggc aatgcgcagc gttccccgca gcacgcccga ctcctgcgcc
     5641 agtgcagaaa ttgcctcttc ggtcgcgctc aggatctgcc ggctcgcttc gtagaacgtc
     5701 ctgcccgcct ccgtcacgct gacccggcgc gtggtgcgca tgagcagggt ggcccctacc
     5761 tcggcctcca gacgctgcat gtgcgtactg accatggtct tcgcgatccc aagacggtcg
     5821 gctgcggccg tcagcgaacc cgcctcgact accgccgcga aaaccaccag ccggttaagg
     5881 ttaacagcgc tcaggctagt catgggattg tccactttaa gaggattgtc taaccatcat
     5941 tatccgtctt ctcatgccca gtgctgcgct atatcctgac tctatcgaaa catcggttca
     6001 acccctttca gagtccatca tgcccacgca gcccaagccc ctccagccaa tacgcctcca
     6061 taccaccctg ctgtctggac acgggcatcg cgcgaagctt ttcctgacgc tgctcgatct
     6121 gcctttcaca acgatcgaac tcaacatgaa agcgggcgac aaccgcaagc cggcgcacct
     6181 ggcactcaat ccgttcggcg aagtaccggt gattgaagat ggtgacgttg tgctgaccga
     6241 ttccaatgcg atccttgtct atctcgcgcg caaatacggc gacccttcgt ggctgccgga
     6301 agatccggta ggcgcggcgg cggtgcaacg ctggctgtcg ctggcggcgg gaaagatagc
     6361 gtatggcccc tgtgccgcgc gtctggtcac ggtgttcggc gcgcccaagg actacgcgac
     6421 agcaaagaag atggcggagg atcttttcgc gatcatcgat cccgagtttc gcgacaagcc
     6481 gttcgcggtc ggacagacac cgaccatcgc ggacatcgcc gcctattcgt acattgcgca
     6541 tgcaccggaa ggcggcatct cgctcgaacc gttcccgcat ttgcgcgcgt ggctgaagcg
     6601 cgtcgaggcg ctgccgcgct tcctgccaat gcccgcgacg aaggctgggc tgctcgctga
     6661 agcgacgtaa cacatcaaac ggcatacact tctcttcgat accgagaaaa tcatgtccac
     6721 tcttgcaccc gctcgtgttg ccgcgccgcc ttcgggttgg cgtgccgtgg aatcgccgtt
     6781 ccatgccggt gaactcgccg cacaggaacg tgcgggggtg cgcgagcgca tggacgtcga
     6841 tgcgcgtcgc gggattcgcg actacatgcc cgagcagcat cgccggttct ttgcggaaca
     6901 accgttcatg gtgctcggtg gagtcgatga aaccgggcaa ccgtgggcca cgctgcgggt
     6961 cggcgcgccg ggttttatct cgacgccgga cgaacacacg ttgcgtatat ccgggcgaag
     7021 tctggcaggc gatccgcttg cccgtacgtg gcaggtcgga tcggttttgg gcggactcgg
     7081 tattcagccc gctactcgcc ggcgcaatcg tgtgaacggg gtcattacct cgatcgacaa
     7141 tcaggcgatc acggttgcgg tgagccagag cttcggcaat tgtgcgaagt acatccagag
     7201 ccgtacgcct gtcgaatttg atgtggaaga agggacacag ctgccgctca tttccaatcg
     7261 tctgaacgat gctgaccggg cgctgctcgc gcgggcggat acgttcttcg tcgccagcgc
     7321 gaatacatcg agtgaagcag gaatgggtcg tggagcggac gtgtcgcatc gcggcggcaa
     7381 gccgggattt atccgcatcg acgatgacaa cacgctgacc acgcctgatt tcagcggcaa
     7441 tctgttcttc aataccatcg gcaacctgat gcacgatcag atc
//
LOCUS       DATGBK010001649         2911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_343377, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001649 DATGBK010000000
VERSION     DATGBK010001649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343377"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            486..2471
                     /locus_tag="VKJ77_23160"
     CDS             486..2471
                     /locus_tag="VKJ77_23160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cache 3/Cache 2 fusion domain-containing
                     protein"
                     /protein_id="HMC48236.1"
                     /translation="MPLFNIRRASVGAKFAILACALVATVVAGFTIAVTHLAGQQIDA
                     QALERMDDDSRAIGTMIRLYDKAVSAEVERYMTLFSSFLPTDFTLDETQKVDIGGVAT
                     PIFKAGDKPMNLDFSIPDQFLDRSGAIATVFARTGDDFVRVTTSLKKQDGARAIGTLL
                     DRKSPAYAPMLGGKRFIGMATLFGKQYITEYKPVTDSSGRVIGALFVGVDVTPEVATL
                     QQNIRDLTIGQNGYFFVVDASNGPNRGKLLVHPGLTGAGSAVATTAPLADERIAPFKQ
                     MLDAKEGRLSFDAPEIADAADPKVHGGAKEIVFRTVPEWQWLIGGIAYRDELLAGVRA
                     TRNRFLLIGLVVIAAFVAVLLFAVARLVGRPLAELTQASECIAAGDLSVRLATTREDD
                     IGRLMIAIDGIATGLARIVTQVRSASADMSDGTGRMAAGSSDISLRIATQASSLEETA
                     ASMEQITSTVQQNAANTAQADQLVASASDAARAGGEAVGRVVATMGEIDASARKISDI
                     TSVIEGIAFQTNILALNAAVEAARAGEHGRGFAVVASEVRGLAQRSAAAVKEIEALIA
                     ESVSRVADGYRIAEEARGTMSGIVERVARVNAIIGEISVASREQSSGIEQVNLAVAQI
                     GEATQQNATLVGEAEQSTAGLHEQAEQLSRAVSVFRL"
     gene            complement(2563..>2911)
                     /locus_tag="VKJ77_23165"
     CDS             complement(2563..>2911)
                     /locus_tag="VKJ77_23165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HMC48237.1"
                     /translation="AEKMNKTSATVPHEIDEFELAGLTKAPGVNVAVPHVAESPAALE
                     CKLLQIVRLKSLDGTPMNNWLALGQVVGVHIRREFLKDGLFDTAAAQPIMRAGYRGDY
                     AGIGEMFEMIRPG"
BASE COUNT          566 a          862 c          935 g          548 t
ORIGIN      
        1 ggttttcgac cacgaccttg tgggaattca tcgaacgctc tcctggttgg cggacgtgcg
       61 tccgcgctct gcatacatag ttgccagaaa aaagtgcggg ttgccgacta tttccgacag
      121 tcacatgtgg aaatacgaca ccccgattta cgctttttgg cagatggaaa gccggatcct
      181 tgtggggcaa gggattgcga gcggtgcggc gccgattcag gcgctttttt acatgtcgct
      241 ccagagcaag tggacgctcg tttcgttaag tttttttggg tttctcaggc ttgtcgtctg
      301 ggttgccggg tgcttttacc gtccggccca tcatattcca cgaatgtggc gcgctggacg
      361 acgtcgggtt ttggctgctt tgcagcgctt gggaacagga cgcggcggaa ccggggcgat
      421 caagaactac cagccaatgc cgttaaccat tcatcttccc ttcatctcgc ttatccggtt
      481 cataaatgcc tctattcaac atccgccgag ccagcgtcgg cgcgaaattc gccattctcg
      541 cctgcgcact cgtggccacg gtcgtagccg ggtttaccat cgcggtcacg catctggccg
      601 gtcagcagat cgacgcgcag gcgctcgaac gcatggacga cgacagccga gcgatcggca
      661 caatgatccg cctctacgac aaagccgtca gcgccgaagt cgagcgctac atgacgctgt
      721 tctcgagctt cctgcccacg gacttcacgc tcgatgaaac gcagaaagtg gatatcggtg
      781 gcgtggcaac acccatattc aaagccggcg acaagccgat gaacctcgat ttctcgattc
      841 ccgatcagtt ccttgaccgc agcggcgcaa tcgcgacggt gttcgcgcgt accggcgacg
      901 atttcgtgcg tgtgacaact tcgttgaaga agcaggacgg cgcacgcgcg atcggtacgc
      961 tgctcgaccg gaaaagcccg gcgtacgcac ccatgctggg cgggaaacgt tttatcggca
     1021 tggcaacgct cttcggcaag cagtacatca ccgagtacaa acccgtcacc gattcgtcgg
     1081 gccgcgtgat cggcgcattg tttgtcggcg tggatgtcac gccggaagtt gcaacgctgc
     1141 agcagaatat tcgcgatctg acgatcggcc aaaacggcta cttcttcgtc gtcgatgcat
     1201 cgaatgggcc gaatcgcggc aagctgctcg tgcatcccgg cttgaccggc gcggggagtg
     1261 ccgttgcaac cactgccccg cttgccgatg aacgcatcgc gccgttcaag cagatgctcg
     1321 acgcgaaaga aggccgtctt tccttcgatg cccccgagat cgcggacgcc gccgatccca
     1381 aggtgcacgg cggagcgaag gagatcgtgt ttcgcacggt gccggaatgg caatggctga
     1441 ttggcgggat tgcgtatcgc gacgagttgc tcgcgggcgt acgcgcgacg cgcaaccgct
     1501 tcctgctgat cgggctagtc gtgatcgccg cattcgtggc cgtgctgctg ttcgccgtag
     1561 ccaggctggt ggggcggccg ctcgcggaac tgacgcaggc ctccgaatgc atcgcggcag
     1621 gcgatctgag tgtgcggctg gcgaccacgc gcgaggacga tatcggccga ttgatgattg
     1681 ccatcgacgg gattgcgacc ggccttgcgc gcatcgtgac gcaagtgcgc agcgcgtcgg
     1741 cggatatgtc ggatggcacg ggacggatgg cagcgggcag cagcgacatc tcgctgcgca
     1801 tcgcgacgca ggccagcagt ctcgaagaaa cagcggcgag catggaacag atcacctcga
     1861 ccgtgcaaca aaacgccgct aacacggcgc aggcggatca gctcgtggca tcggcatccg
     1921 atgcagcgcg cgccggtggc gaagcggtcg gccgagtggt cgcgacgatg ggtgaaatcg
     1981 atgcgtccgc gcgcaagatt tcagacatca cgtcggtgat cgaaggtatc gcgttccaga
     2041 ccaacatcct ggcgttgaac gcggccgtgg aagccgcgcg cgccggggag cacgggaggg
     2101 gctttgccgt ggtggcgtcg gaggtgcgcg gactggctca gcgcagcgcc gcagcggtca
     2161 aggagatcga agcgctgatc gcggaatcgg tcagccgggt cgccgatggt taccggattg
     2221 ccgaagaagc ccgcggcacg atgagcggga tcgtggagcg cgtcgcgcgg gtgaacgcaa
     2281 tcattggcga gatcagcgtg gcgtcgcgtg aacaatcgag cggcatcgag caagtgaacc
     2341 ttgcagtggc gcagatcggc gaagccactc agcagaatgc gacactggtc ggcgaggcgg
     2401 aacaatcgac tgccggcttg catgagcaag ccgaacagtt gagccgcgca gtgagcgtgt
     2461 tcaggctgta attacgaacg gggcgcagcg gatgattggc ggataactag cggatgactc
     2521 gaacgccgcc gcgcggaata atcgcggcgc ttgggaccat cactagcccg gacggatcat
     2581 ctcgaacatc tcgccgatac ccgcgtagtc cccgcggtaa cccgcacgca tgatgggctg
     2641 cgcggcggcg gtatcgaaga gaccatcctt caggaactcg cgccggatat gcacgccaac
     2701 cacttgcccg agggcgagcc aattgttcat cggcgtgccg tccagggatt tcagccgcac
     2761 gatctgcaac aacttgcatt cgagcgccgc cggcgactcc gccacatgcg gcacggccac
     2821 gttcacaccc ggtgctttcg tgagtcctgc cagctcgaat tcgtcgattt cgtgcggcac
     2881 ggttgccgag gtcttgttca tcttctcggc a
//
LOCUS       DATGBK010001650         3192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_19145, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001650 DATGBK010000000
VERSION     DATGBK010001650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3192
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19145"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..642
                     /locus_tag="VKJ77_23170"
     CDS             <1..642
                     /locus_tag="VKJ77_23170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48238.1"
                     /translation="VADEFIPAGRVKDFAPYIAKIRASGADAVITGNWGNDLTLLVKA
                     AREQGLDTHFYTFYGNSLGAPAALGDAGVKHVVAVADWHPNAGGAASDAYYEAFRTRF
                     PAAADDYLFLRMPLMIEMLAQAMDKAHSADPTAVARALEGMKLDKGFQATEMRAADHQ
                     LIQPLYVMEMDKAGSSGVRFDNEGSGFGFRTLLKIPAAQTAMPTSCQMKRPAS"
     gene            908..1189
                     /gene="rpsO"
                     /locus_tag="VKJ77_23175"
     CDS             908..1189
                     /gene="rpsO"
                     /locus_tag="VKJ77_23175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HMC48239.1"
                     /translation="MSTVAAVAHAKKSDVVAEYARAANDTGSPEVQVALLTTRINELT
                     VHFKAHTKDHHSRRGLLRMVSRRRKLLDYLKGKDADRYRSLIEKLGLRK"
     gene            1556..>3192
                     /gene="pnp"
                     /locus_tag="VKJ77_23180"
     CDS             1556..>3192
                     /gene="pnp"
                     /locus_tag="VKJ77_23180"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HMC48240.1"
                     /translation="MRMFKKIVKEFKWGQHNVRLETGEIARQASGAVIVDIEDTVVLA
                     TVVGAKTAKPGQDFFPLTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLR
                     PLFPEGYYNEVQVVIHVLSLNPEVPADIPALIGASAALAISGLPFNGPVGAARVAYIN
                     NEYVLNPTRPQMKESALDLIVAGTERAVLMVESEAQQLTEEVMLGAVVFGHDQMQVAI
                     DAIHELVAEGGKPEWDWTPAPKNEPLIARVTELAEADLNAVYQIRDKSARTAKLKEVY
                     AATTAKLTEDAVAAGQTPADKATIGNVMFDIEAKIVRTQILNGEPRIDGRDTRTVRPI
                     EIRTGVLPRTHGSALFTRGETQALVIATLGTKGDEQNIDALEGEYRERFMLHYNMPPF
                     ATGETGRVGSPKRREIGHGRLAKRALVAVLPSADEFGYSIRVVSEITESNGSSSMASV
                     CGGCLALMDAGVPMKAHVAGIAMGLIKDGNRFAVLTDILGDEDHLGDMDFKVAGTAQG
                     VTALQMDIKIQGITKEIMQVALAQAKEARLHILGKMV"
BASE COUNT          699 a          952 c          962 g          579 t
ORIGIN      
        1 gtcgccgatg aattcatccc cgccggccgc gtgaaggact tcgcgccgta catcgccaag
       61 atccgcgcaa gcggcgccga tgcggtgatc accggcaact ggggcaacga cctgacgctg
      121 cttgtcaaag ccgcccgcga acaagggctc gacacgcatt tctacacgtt ctacggcaac
      181 agcctgggcg cgcccgccgc cctgggagac gcgggcgtga agcacgtcgt ggcagtggcc
      241 gactggcatc cgaacgcagg cggcgcggcg tcggacgcct attacgaagc gttccgcacc
      301 cgtttcccag ccgccgccga tgattacctc ttcctgcgca tgccgctgat gatcgagatg
      361 ctcgcgcaag ccatggacaa agcacacagt gccgacccga ccgcggtcgc ccgggcgctg
      421 gaaggcatga agctggacaa gggtttccag gcgacagaaa tgcgcgccgc cgatcatcaa
      481 ctgatccagc ccctttacgt gatggaaatg gataaagcgg gctcgtccgg cgtgcgtttc
      541 gacaacgaag gttccggttt tggctttcgg acgttgctca agatcccggc ggcccagacc
      601 gccatgccga cttcgtgcca gatgaagcgc ccggcgtcgt gaaaataaca aaccttgggc
      661 gcgggcctat tgcatcattt cactcgtcgt tccgaaccgg gtcgacggca aaaaccgctg
      721 tgctataatc cgcgacttgc cgtactcagg gttggtggaa ttgtaggttg caaagcctgc
      781 ttaaaacgtt cctcggaccc attcggcaag gaagtccaaa gccgagttat cggctgagga
      841 atgatgtaga aaacccacgg cacggccctt cttccgtgac cgcctgtccg tttcaaagga
      901 aaatcaaatg tcgaccgtag cagcagttgc tcatgcaaag aagtccgacg tcgtcgcaga
      961 atatgcgcgc gccgctaatg acaccggatc gccagaagtg caagtcgcac tgctgaccac
     1021 ccgtatcaat gaactgaccg ttcacttcaa ggctcacacg aaggatcacc acagccgccg
     1081 cggcctgctg cgcatggtga gccgtcgtcg taagctgctc gattacctca agggcaaaga
     1141 cgctgatcgt tatcgctcgc tgatcgagaa gctgggcctg cgcaagtaag cggccagcgt
     1201 tcacaacgaa atgcctgtgt cagtctgctg atacaggcat tttgtttttg aacggcgcgc
     1261 tcttcatggg cgcagaagtg aaagtagcgg gaaatatcga aggcttgcat taaagccaac
     1321 cccggatcgg aagccgattc gactacagga ccgggcctcg cggcagagct ttgtgtcatt
     1381 ccagcgcgtc atgcgcatcg cgtgtcgtgt tgcgttggaa tgacatacac ccctcttttc
     1441 gcgcggtttc ggtcatcgct tggcttcgcc gttttttcag cgtgtgcacg gtctccggat
     1501 gctccagagg ccacgacaac acgctcgaac aagcgcgagg cataacgaag aaggagtgag
     1561 aatgtttaaa aagatcgtca aggaattcaa gtggggacaa cacaacgttc gcctggaaac
     1621 aggtgaaatc gcgcgccagg caagcggcgc cgtgatcgtt gatattgaag ataccgtggt
     1681 gctcgcgacg gttgtcggcg cgaagacggc aaagccgggc caggatttct tcccgttgac
     1741 cgtcgattat ctggaaaaga cctacgcagc cggcaagatc ccgggtggtt tcttccgtcg
     1801 cgaaggccgt ccgtcggaag gcgaaacact gatctcgcgc ctgatcgacc gtccgttgcg
     1861 cccgctgttc ccggaaggct attacaacga agtccaggtc gtgattcacg tgttgtcgct
     1921 gaatcccgaa gtgcccgccg acattcccgc gctgatcggc gcgtcggcag cgctggctat
     1981 ctccggcttg ccgttcaacg gcccggtggg cgctgcccgt gttgcgtata tcaacaatga
     2041 atacgtgctg aacccgaccc gtccgcaaat gaaggaatcg gcgctcgact tgatcgtcgc
     2101 cggtacggaa cgcgcggtgt tgatggtgga atcggaagca cagcaactga ctgaagaagt
     2161 catgctgggc gccgtggtgt ttggtcacga tcaaatgcaa gtcgcaatcg acgcgatcca
     2221 cgaactggtt gccgaaggcg gcaagccgga gtgggactgg acgccggcac cgaagaacga
     2281 gccgctgatt gcacgagtaa cggaattggc agaagccgac ctgaacgccg tttatcagat
     2341 tcgcgacaaa tcggctcgca ccgcgaagct gaaggaagtc tacgcagcaa cgaccgcgaa
     2401 gctgaccgaa gacgcagtgg cagcaggcca gacgccggct gacaaggcga ccatcggcaa
     2461 cgtgatgttc gacatcgaag cgaagatcgt ccgtacgcag atcctgaacg gcgaaccgcg
     2521 tattgacggc cgcgacaccc gcaccgttcg tccgatcgaa atccgtactg gcgtgctgcc
     2581 gcgtacgcac gggtcggctc tgttcacgcg cggcgaaacg caagcgctcg tgatcgcgac
     2641 gctgggcacg aagggcgacg aacagaacat cgacgcgctc gaaggcgagt atcgcgaacg
     2701 cttcatgctt cactacaaca tgccgccgtt cgcgaccggc gaaacgggtc gcgtcggttc
     2761 gccgaagcgc cgcgaaatcg gtcacggccg tctggcaaaa cgcgccttgg tcgcagtgct
     2821 gccgagcgcc gacgaattcg gctactccat ccgcgttgta tcggaaatca cggaatcgaa
     2881 cggttcttcg tcgatggctt cggtctgcgg cggctgcctc gcactcatgg acgccggtgt
     2941 tccaatgaag gcgcacgtcg ccggcatcgc catgggcctg atcaaggacg gcaaccgctt
     3001 cgccgtgctc accgacatcc tgggcgacga agatcacctc ggcgacatgg acttcaaggt
     3061 ggcgggcacg gcgcaaggcg tgacggcact gcagatggac atcaagatcc agggcatcac
     3121 caaggaaatc atgcaggtcg ccctggcgca agccaaggaa gcccgcctgc acatcctggg
     3181 caagatggtc ga
//
LOCUS       DATGBK010001651         2367 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_250548, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001651 DATGBK010000000
VERSION     DATGBK010001651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250548"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..581)
                     /locus_tag="VKJ77_23185"
     CDS             complement(<1..581)
                     /locus_tag="VKJ77_23185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HMC48241.1"
                     /translation="MSQIAESTASVAQTPSSDSGPASLPWIKKLVSFDTVSRNPNMGL
                     IETVRDELRAAGIESTLSTDPSGKWANLFATVPAHDGATNGGIVLSGHTDVVPVDGQK
                     WDSDPFKPEIRDGLLYGRGTCDMKGFIGASLSLLPKMQATKLARPIHFALSFDEEVGC
                     AGAPLMITDLQKRGLRPDGCIVGEPTSMRPVIA"
     gene            complement(671..>2367)
                     /locus_tag="VKJ77_23190"
     CDS             complement(671..>2367)
                     /locus_tag="VKJ77_23190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TRCF domain-containing protein"
                     /protein_id="HMC48242.1"
                     /translation="ESFGFEETPDQAAAITAVIGDMTSGKPMDRLVCGDVGFGKTEVA
                     LRAAFIAVMGGKQVAILSPTTLLAEQHTNTFSDRFSDWPVKIAELSRFKSTKEVAASI
                     QAINEGTIDIVIGTHKLLSTDVVFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTL
                     TATPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQV
                     YFLHNEVETIDNRRAMLEALVPEARIAVAHGQMHERELERVMRDFVGQRANVLLCTTI
                     IETGIDVPSANTILIHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPAALTKQAQR
                     RLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTDMLNDAVLAL
                     KEGREPDLNAPLAATTEINLHAPAILPADYCGDVQERLSLYKRMANCETSDSIDRILE
                     ELIDRFGKLPPQASALVETHKLRLAAKPLGIIKIDAAEHAIALQFIPNPPVDAMKIIE
                     MVQKNKHIKLAGQDKLRIEVRSPDIAVRISTVKETLRALGAPVRQQKPAAAVAPSR"
BASE COUNT          430 a          734 c          712 g          491 t
ORIGIN      
        1 tgcgcgatga ccggccgcat gctggtcggc tcgcccacaa tgcagccatc gggacgcagc
       61 ccgcgttttt gcaggtccgt gatcatcagc ggcgcgccgg cgcagccgac ttcttcatcg
      121 aaggagaggg cgaagtggat cggccgcgcg agcttcgttg cctgcatctt cggtaacaag
      181 ctcagcgatg cgccgataaa ccccttcatg tcgcacgtcc cgcgaccgta caaaaggcca
      241 tcgcgaatct ccggcttgaa cggatcgctg tcccatttct ggccgtcgac aggcaccaca
      301 tccgtatggc ccgaaagcac gatgccgccg ttcgtcgcgc catcgtgcgc gggcacggtc
      361 gcgaacaggt tggcccactt gccggaagga tcggtgctga gcgtgctttc aataccggct
      421 gcgcgcaatt cgtcgcgcac tgtttcgatc aagcccatgt tcgggttgcg gctgacggtg
      481 tcgaaggaga cgagcttctt gatccacggc aacgacgccg ggccggaatc ggaagagggt
      541 gtttgcgcga cggaagccgt cgattcagcg atctgtgaca tgacgctctc cttggaattt
      601 ttcactttcg ataataccga aaaaaccggc cacgcaccgc cggacaaggc agtgcgtggg
      661 tttgaagtta ttaacgcgaa ggcgcgaccg cggcggcagg tttctgctgg cgcaccggtg
      721 cgccaagcgc acgcagcgtt tccttgacgg tcgaaatccg cacggcaata tccggactgc
      781 gcacttctat gcgcagcttg tcctgccccg cgagcttgat gtgcttgttc ttctgcacca
      841 tctcgatgat cttcatggca tcgacaggcg ggttcgggat gaactgcaac gcgatcgcat
      901 gctcggccgc gtcgatcttg ataatgccca gcggcttggc cgcgaggcgc agcttatgcg
      961 tctcgaccag cgcgctcgcc tgaggcggca gcttgccgaa ccggtcgatc agctcttcca
     1021 ggatgcgatc tatggaatcg cttgtttcgc agttcgccat gcgtttgtac agcgacaaac
     1081 gttcctgcac atcgccgcaa taatcggcgg gaaggatggc cggcgcgtgc agattgatct
     1141 cagtcgtggc ggcgagcggc gcgttcagat cgggctcgcg gccttccttc agcgcaagca
     1201 cggcgtcgtt gagcatgtcg gtgtaaagct ggaaaccgat ctcgtggatt tcgcccgatt
     1261 gtttatcgcc gagtacttcg cccgtgccgc gaatttccag atcgtgcatc gcgagataaa
     1321 agcccgaacc gagttcttcc atctgctgga tggcttccag ccgtcgctgc gcctgtttcg
     1381 tgagcgcggc cggatcgtga accagcaaat aggcgtaagc ctgatggtgc gaacgcccga
     1441 cgcgcccacg taactgatgc aactgcgcga ggccgaattt atcggagcga tggatcagga
     1501 tcgtgttggc gctcggcacg tcgatccccg tttcgataat cgtcgtgcac agcagcacat
     1561 tcgcgcgctg gccgacgaaa tcgcgcatca cgcgttcgag ttcgcgctcg tgcatctgcc
     1621 cgtgcgcaac ggcaatccgc gcttcgggta ccagcgcttc gagcattgcg cgacggttgt
     1681 cgatcgtctc gacttcgttg tgcaggaaat aaacctggcc gccgcgcttc agttcgcgca
     1741 gcattgcctc gcggatcacg ccgtcttctt cgcgtcgaac gaaggtcttg attgcgaggc
     1801 gcttttgcgg cgcggtggcg atgatcgaga agtcgcgcaa gccttccagc gccatgccca
     1861 gagtacgggg aattggcgta gcggtgagcg tcagcacatc gacttccgcg cgcagcgcct
     1921 tgagcgcctc cttctggcgc acaccgaacc gatgctcctc gtcgatgatc accagcccga
     1981 gccgcttgaa cacgacgtcg gtggagagca gcttgtgcgt gccgatcaca atgtcgatgg
     2041 tgccttcgtt gatcgcctga atcgatgccg ccacttcctt cgtgctcttg aagcgcgaca
     2101 actcggcaat cttcaccggc cagtcggaga accggtcgct gaacgtgttc gtgtgctgtt
     2161 cggcgagcag ggtggtcggt gaaagaatcg cgacctgctt accccccatc accgcgataa
     2221 acgccgcccg caacgccact tccgtcttac cgaaaccgac gtcgccgcaa acgagacgat
     2281 ccatcggctt gccgctggtc atgtcgccta tcaccgcggt gattgccgcg gcctgatcgg
     2341 gcgtttcctc gaagccgaaa ctttccg
//
LOCUS       DATGBK010001652         2753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_343399, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001652 DATGBK010000000
VERSION     DATGBK010001652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343399"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..737
                     /locus_tag="VKJ77_23195"
     CDS             <1..737
                     /locus_tag="VKJ77_23195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007180975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HMC48243.1"
                     /translation="LRHDDDMYTFVPERHLVVVEKRQNKDAFPSLLTTSSDQVLTVYE
                     PKMLGPDRVAGIDSQVIELDPKDAWRFAYKLWADSKTGLLLRAQTLGPDGQVLEQLSF
                     SQVQIGGSVDRAGIANGIKNIAGWTVVRPPVEPVDMEAQGWKITPAVPGFREIRELRR
                     PMASREEGQPPIPVDQAVFSDGLAAISIFVEPVEKNSRKEGAGDSGATHVLVKRRGDF
                     WITLLGEVPQATLQQFASAIEYKPSK"
     gene            757..2385
                     /locus_tag="VKJ77_23200"
     CDS             757..2385
                     /locus_tag="VKJ77_23200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HMC48244.1"
                     /translation="MSNLSLRTYFAAAAFAACLPLATFAATATTPASAPATTPVAVPG
                     VNLPDFTTLVDKVGPSVVNIRTTTRVSSSNDLRGLPPGMDDGDMSEFFRRFFGIPMPG
                     SPGSPRGGGGSGGNGGGSGGNGGSGGGDQGGSDNGSSQGNRSAPQDSPDNQDNSEQSS
                     GVGSGFIMSADGYVMTNAHVVDDADTIYVTLTDKREFKAKLIGVDERTDVAVVKIQAT
                     SLPAITIGDSNKVRVGEWVLAIGSPFGLDNTVTAGIVSAKGRDTGDYLPFIQTDVAVN
                     PGNSGGPLINMAGEVIGINSQIYSRTGGFMGISFAIPIDEAMRVADQLKTTGKVTRGR
                     IAVAIGEVTKEVADSLGLPKAQGALVSSVEAGGPADKAGIQPGDIILKYNGHDVSTAT
                     DLPRMVGDTKPGTKATITVWRKGESRDLPITIAEMQPDKVAKTEAKKTPAPKASASNT
                     LGIAVSDIPADQKKALKLTNGVMVDAVEGPAARAGFQKGDVILRIGDTDITSAKQFDA
                     VVQNVDPSKMVAVLVRRGDNTQFVPLRPRAPAQK"
     gene            2382..2666
                     /locus_tag="VKJ77_23205"
     CDS             2382..2666
                     /locus_tag="VKJ77_23205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HMC48245.1"
                     /translation="MSTMSALKLYGRAWCHLCEDLRAELEPIAAEFGVAIEWIDIDTD
                     PALEALYDELVPVLVLDGVELCHYRLDETRVRDALLNKLPSALSGTPGTR"
BASE COUNT          552 a          794 c          899 g          508 t
ORIGIN      
        1 tgcttcgcca cgatgacgac atgtacacgt tcgtacccga acggcatttg gtggtcgtcg
       61 aaaaacgcca gaacaaggac gcgttcccgt cgctgctgac gaccagcagt gaccaggtcc
      121 tcacggtcta tgagcccaaa atgctcggcc cggaccgtgt agccgggatc gacagccagg
      181 taattgagct cgatccgaaa gacgcctggc gtttcgccta caagctctgg gccgactcga
      241 aaacaggcct tctgctgcgc gcgcagacgc tcggtcccga cggccaggtg ctggaacagc
      301 tttcattttc gcaagttcag attggcgggt ccgtggaccg cgccggcatt gcgaatggga
      361 tcaagaacat agccggttgg acggtcgtac ggccaccggt tgagcctgtc gatatggaag
      421 cgcagggctg gaaaatcacg cctgccgtgc cgggtttccg cgaaattcgc gagttgcgcc
      481 ggccgatggc atcgcgtgaa gagggccagc cgcctattcc cgtcgatcag gctgttttct
      541 ctgacggact ggcggcaatc tcgatttttg tcgagcccgt ggaaaaaaat tcccgcaagg
      601 aaggtgctgg cgatagcggc gcgacacacg tgctggtcaa gcgccgcggg gatttctgga
      661 ttaccttgct gggcgaagtg ccccaggcca cgttgcagca atttgcttct gccatagaat
      721 acaagccttc caagtaattc ctcggcccac cacgatatga gcaatctctc gctgcgcacc
      781 tatttcgcgg ccgcggcgtt tgccgcatgc ctgccgctcg cgaccttcgc ggccacggca
      841 acaacgcccg cgtcggcgcc ggccaccaca ccggtcgcgg tgccgggagt gaatttgccc
      901 gacttcacca cactcgtcga taaagtgggt ccgtcggtcg tcaacattcg tacgacaacc
      961 cgcgtcagca gcagtaacga tctgcgcggc ttgccgcccg gtatggacga cggcgacatg
     1021 tcggagttct tccgccgttt cttcggtatt ccgatgcccg gctcgccggg ttcgccacgc
     1081 ggcggcggtg gaagcggtgg taacggtggt ggtagcggcg gcaacggcgg gagcggaggc
     1141 ggcgatcagg gcggcagcga taacggcagc agccagggta atcgcagtgc tccgcaggac
     1201 agccctgaca atcaggataa ttcggagcag agcagcggcg tgggctcggg tttcatcatg
     1261 tcggccgatg gttatgtgat gaccaatgcc cacgtggtcg acgacgcgga cactatctac
     1321 gtcacgctca cggacaagcg cgaattcaag gcgaagctga tcggtgtcga tgagcgcacg
     1381 gacgtggcgg tcgtcaagat ccaggcgacg agcttgccgg ccattaccat cggcgattcg
     1441 aacaaggtgc gtgtcggcga atgggtgctg gcgatcggct cgccgttcgg gctcgacaac
     1501 acggtgacgg cgggtatcgt cagtgcgaag ggacgtgaca ccggtgacta cttgcccttc
     1561 atccagactg atgtcgccgt gaatccgggc aattcgggtg gtccgctgat caacatggcg
     1621 ggcgaggtga ttggcatcaa ctcgcagatc tacagccgta cgggcggttt catggggatt
     1681 tcattcgcga ttcctatcga tgaagccatg cgcgtcgctg atcaactgaa gacaacgggc
     1741 aaggtcacgc gcggccgaat tgcggtggcg atcggcgagg tcacgaagga agtggcggat
     1801 tcgctcgggt tgccgaaggc gcaaggcgcg ctggtgagca gcgtggaagc gggcggcccg
     1861 gccgacaagg cgggtatcca gccaggcgac atcatcctga agtacaacgg ccacgacgtg
     1921 tccacggcga cggacctgcc gcgcatggtt ggcgatacga agcctggcac gaaggcgacg
     1981 atcaccgtgt ggcgtaaggg cgagtcgcgc gatctgccga tcaccattgc ggaaatgcag
     2041 ccggacaagg tcgcgaagac tgaggccaag aagacgccgg cgccgaaggc gagcgcgagc
     2101 aacacgctcg gaattgcggt gagcgacatt ccggctgacc agaagaaggc gctgaaactc
     2161 acgaatggcg tgatggtgga cgctgttgaa ggtccggcgg cgcgtgccgg cttccagaag
     2221 ggcgacgtca tcttgcggat cggcgataca gatatcacga gcgcgaagca attcgacgcg
     2281 gtcgtgcaaa acgtcgaccc gagcaagatg gtcgcggtgc tggtgcgtcg tggggacaac
     2341 acgcagttcg tgccgttgcg cccgcgtgcg ccggcgcaga aataagcaca atgagcgcgc
     2401 tgaagcttta tgggcgcgcg tggtgccacc tgtgcgaaga cttgcgcgcc gaacttgagc
     2461 cgattgcggc tgagttcggc gttgctatcg agtggatcga tatcgacact gatcctgcgc
     2521 tcgaggcgtt atacgacgaa ctcgtgcccg ttctggtgct ggatggcgtg gagttatgcc
     2581 attaccggct ggacgaaacg cgcgtgcggg atgcgctcct gaataagctt ccaagcgcgc
     2641 tttcaggcac acctggcacg cgctaagtcc ctgagcaatc ggacctttcc cgtaaaatcc
     2701 gccgtcagcc cgccttttcg gctaaaatag acaagttttt cacccccatt ttc
//
LOCUS       DATGBK010001653         4618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_343479, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001653 DATGBK010000000
VERSION     DATGBK010001653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4618
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343479"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..1032)
                     /locus_tag="VKJ77_23210"
     CDS             complement(148..1032)
                     /locus_tag="VKJ77_23210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006759530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC48246.1"
                     /translation="MLSASNDRASASGNADSFTDISHFEHVPRRYYGRYFASAVILAI
                     IVYIVVAFARGQIDWAVVGRFLTAKSILKGLGNTVVMTILAMALGIVLGVIIAIMRLS
                     TNPVMRAVAHGYVWLFRGTPVILQLLLWFNLALVFPVMGIPGLFEFRTVDIMTPFLAA
                     LLGLGINQGAYTSEVVRAGLLSVDTGQYEAAKSIGMPKLQALRRVILPQAMRVIVPPI
                     GNELIGMVKLTSLASVIQYAEMLHSAENIYYANARVIELLMVAGVWYLVIVTVLSLLQ
                     SRVELRFARGAGRPSAKQ"
     gene            complement(1026..2459)
                     /gene="argH"
                     /locus_tag="VKJ77_23215"
     CDS             complement(1026..2459)
                     /gene="argH"
                     /locus_tag="VKJ77_23215"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011661327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HMC48247.1"
                     /translation="MNTTDATERLWGGRFKSGPSLALENLSRSDPSFFRLAPYDLAGS
                     RAHANELKRAGILSADELQQLLDAMQQIETEFVAGDLAPILADEDVHTFLERELTQRL
                     KAIGGKLRAGRSRNDQAANDLRLYLRDKARQLALAIIELQHALVEQAEAHVQTVTAGF
                     THLQPAQPIVFAHQLLAHAQSIYRDVDRLVDWDRRSARSPLGAAALAGSAICLRADLS
                     ALELGYDGPCENSIDAVASRDHVAEFTFITSMLAVNLSRLSEEVILWTSRQFRWVELD
                     DAYATGSSIMPQKKNSDIAELTRGKAGRLIGNLSGLLATLKSLPLAYNRDLAEDKIAA
                     FDSIDTLELVLPAMAGMIRTMHVNVDEMRRQAPLGFTLATEVADWLALRGVPFSEAHE
                     ITGALVKACEQQGIELGEVSVATLAAVDARLEPGVLDHITLDAAVAARRGYGGTAPAR
                     VAEQIARLRSAIEEQVAWAAYYKGPSC"
     gene            2631..3509
                     /locus_tag="VKJ77_23220"
     CDS             2631..3509
                     /locus_tag="VKJ77_23220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006759528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48248.1"
                     /translation="MRHRLPPLNPLRAFEATARHGTVASAAEELNVTASAVSHQVRVL
                     ESTLGVALFIRSKARVKLTPAGEALLQPVKTAFDMIATAVVRLDSPVVAGDLVVSAPM
                     LFTSRWLARHIGDFLEQFPAVNLKLIPSNDDKEIYSSDVDLCVRYGEGRWRDRDVKLI
                     MHPVLFPVVSPALMNGPRALRTVQDLANRTLFCEHAGSWRRWLAEASADKLEGLRILE
                     IGIAHVGIEAAVRGQGVALGDSFSVRDDLADGTLVRPFHITVPAKHAYYWIRRHELAE
                     APLVAAFVSWVDSKLA"
     gene            3827..>4618
                     /locus_tag="VKJ77_23225"
     CDS             3827..>4618
                     /locus_tag="VKJ77_23225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007576878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC48249.1"
                     /translation="MWIVNVALKRPYTFIVMAILILLATPFALLTTPVDVLPDINIPV
                     VSIIWNYTGLSAEDMANRITQVNERSLTTTVNDIEHIESQSLPGIAILKVVLLPTANI
                     QTAIAQTVAVEQAQLKQMPPGATPPLVISYSASSIPVIQLGLSSPTLSEQNLNDSALN
                     FLRPQLVTIPGAAVPYPYGGKSRLISVDLDTRALLAKGLTPSDVVSAFNAQNLILPTG
                     TAKIGMKEYTINMNGSPATIAALNDIPVRTLNGATTYLREVAHVRD"
BASE COUNT          893 a         1413 c         1388 g          924 t
ORIGIN      
        1 cctgatggcc cgatgatgca cagcacttcg cccttcgcga cgtcgaggtt gatgccgtgc
       61 agcgcctgga actcgccata ggacttgcgc aggtcgaccg ctttgactaa tgggctcatg
      121 gttgcctggg ttcgcgtatg agtggagtta ctgtttcgcg gatgggcggc cggccccgcg
      181 cgcgaagcgc agttcgaccc gcgactgcag caaggaaaga accgtgacaa tgaccagata
      241 ccagacgccc gcgaccatca gcaattcgat cacgcgagcg ttcgcatagt agatgttctc
      301 ggcgctgtgc agcatttccg cgtactggat cacgctggcg agcgaggtca gcttcaccat
      361 gccgatcagt tcgttgccaa taggcggcac gatcacgcgc atggcctgcg gcaggatcac
      421 acggcgcagt gcctggagtt tcggcatgcc gatcgacttc gcggcttcgt actggccggt
      481 atccaccgat agcaatcccg cgcgcacgac ctccgacgta taggcaccct gattaatccc
      541 aagaccgagc agggcggcga ggaacggcgt catgatgtcg acggtacgaa actcgaacag
      601 gccgggaatg cccatgaccg gaaacaccag cgcgaggttg aaccacaaca acaattgcag
      661 gatcaccggc gtgccgcgaa acagccacac gtagccatgc gcgactgcgc gcatgaccgg
      721 gttggtcgag agccgcatga tcgcaatgat gaccccaagc acaatgccca gcgccatcgc
      781 gaggatcgtc atgacgaccg tattgccgag gcctttgagg atcgacttgg ccgtcaggaa
      841 gcgtccgaca acggcccagt cgatctgccc gcgcgcgaac gccacgacga tatacacaat
      901 gatcgccagg atcactgccg acgcgaaata gcgcccgtag tagcgccgcg gcacgtgttc
      961 gaagtgcgag atatcggtga agctgtcggc gttgccggac gccgatgcac ggtcgttcga
     1021 tgcgctcagc atgaaggtcc cttgtagtaa gccgcccacg cgacttgttc ttcaatagcg
     1081 ctgcgcaggc gcgcgatctg ttctgccacg cgtgccggcg ccgtgccgcc gtaacccctg
     1141 cgcgccgcga cggcggcgtc cagcgtgatg tgatcgagga cgccgggttc aagtctcgca
     1201 tccaccgctg cgagagttgc caccgacacc tcgcccagtt caatgccttg ttgttcgcaa
     1261 gccttcacca atgcgccggt gatctcatgg gcttcgctga acggcacgcc gcgcagcgcg
     1321 agccagtcgg cgacttcggt ggcgagcgta aacccgagcg gcgcctgacg ccgcatttca
     1381 tccacgttca catgcatggt gcggatcata ccggccatgg cgggcagcac aagttcgagc
     1441 gtatcgatac tgtcgaacgc ggcgatcttg tcttccgcga gatcacggtt ataagccaac
     1501 ggcagcgact tgagggtggc aagcaagccg ctcagattgc cgatcaagcg gcccgccttg
     1561 ccacgtgtca gctcggcgat atccgagttt ttcttctgcg gcatgatcga gctgccggtt
     1621 gcataagcat cgtcgagttc gacccagcga aactgccgcg aggtccacag gatcacttct
     1681 tccgagagcc gcgacaggtt gacggccagc atgctcgtga tgaatgtgaa ctcggcaacg
     1741 tggtcgcgcg aggcgacggc gtcgatggag ttctcgcacg ggccgtcgta gccgagttcc
     1801 agcgcggaca gatcagcccg caagcagatc gcggaccccg ccagtgccgc cgcgcccagc
     1861 ggcgaacgcg cactgcgccg gtcccagtcc accagccggt cgacatcgcg ataaatcgat
     1921 tgtgcatgcg cgagcaactg atgcgcgaac acgatcggct gtgccggttg caaatgcgtg
     1981 aagccggcgg tgacggtctg tacgtgcgcc tcggcctgtt caaccagcgc gtgctgcaat
     2041 tcgatgatcg ccaacgccag ctggcgagcc ttgtcgcgca gatataaacg caggtcgttt
     2101 gccgcttgat cgttgcgtga gcggcccgcg cgcaacttcc cgccgatcgc tttgagccgt
     2161 tgcgtcagct cgcgctcgag gaaggtatgg acatcttcgt cggcaaggat aggggcgagg
     2221 tcgccggcaa cgaattcggt ctctatttgc tgcatcgcgt cgagcagttg ttgaagctcg
     2281 tcggcgctca ggattcctgc tcgcttcagt tcgtttgcat gggcgcgcga accggcgaga
     2341 tcgtagggcg cgagacggaa gaagctggga tccgagcgtg acaggttttc cagcgccagc
     2401 gagggccctg atttgaagcg gccgccccag aggcgttcgg ttgcgtcagt agtgttcatg
     2461 cgtttgccta gagttgccga agcggtttgc cctaaaggga tcgcctaaga gcgtttcaga
     2521 atgacgctta gcttacgcaa tcaaattttt tgcttgtaga gagaattaaa ttcgccttaa
     2581 atcaaatttt tctcagcatc tctcgtttct cacgttctcc ggacttgcct atgcgccatc
     2641 ggctgccccc gctcaatccc ctgcgtgcgt tcgaagcaac ggcacggcat gggacggttg
     2701 cgagcgcggc cgaggagctc aacgtgacgg ctagcgccgt cagccatcag gtgcgcgtgc
     2761 tggagagcac ccttggcgtg gccttattca tccgctcgaa ggcacgggtg aaactgacgc
     2821 ctgccggcga ggcgctcctg cagccggtca agactgcgtt cgacatgatc gcgacagcag
     2881 tggtcaggct ggattcgccc gtcgttgcgg gggatctggt ggtatcggcg ccgatgttgt
     2941 tcacctcgcg gtggctcgcg cggcatatag gtgatttcct cgagcaattc cccgcagtca
     3001 acttaaaact gatcccgtcc aacgacgaca aggaaatcta ttcatccgat gtcgacctct
     3061 gcgttcgata cggcgagggc cgctggcgtg accgcgacgt caagctcatc atgcatccgg
     3121 tcctgttccc cgttgtgagc ccggcgttga tgaacgggcc tcgggcgctt cgcacggtgc
     3181 aggacctggc aaaccggacc ttgttctgcg agcacgccgg atcgtggcgg cgatggctgg
     3241 cggaggcgtc ggctgacaag cttgaaggtt tgcgcattct tgaaatcggc attgcgcatg
     3301 tgggaatcga agccgcagtg cgaggacaag gcgtagcatt aggcgatagc ttttccgtcc
     3361 gtgacgatct cgccgatggc acgctcgttc gtccctttca tatcaccgtg ccggccaagc
     3421 atgcgtatta ctggatacgc cgccacgagt tggcggaggc gccgctagtg gccgcgtttg
     3481 tatcgtgggt ggactcgaaa ctagcgtgat gtcttctatt tttatcgggt atgaaaagca
     3541 gcccgattgc gcgaaaacgt ttgcctctgg aaaaccagcg aaaagacccg ctttctgaca
     3601 tttctgccat tttggcgcca tctaggcgtt ggcacctgcc cgttaagatc ggacgtgagt
     3661 tgcctatccg tggcctgttg gctgcttgaa aggccgcatg gcttcgggcc gcactcgatc
     3721 cggctcgccg tgtgcaagac atcgcctgaa tggctttgcc tgaacggtat cgtggctgca
     3781 tcccagcggt tcattcttct ttcctgcttt tttcgagcgc gtctcaatgt ggatcgtcaa
     3841 cgttgcgcta aagcggccct acacgtttat cgtgatggcc atcctgatcc tgttggcaac
     3901 gccgtttgcg ctcctgacaa cgccggtcga cgtcctcccg gacatcaaca tccccgtcgt
     3961 cagcatcatc tggaattaca cgggcctgtc agccgaggac atggccaacc gtattacgca
     4021 ggtcaacgag cgcagcctga ccacgaccgt caacgatatt gaacacatcg agtcgcagtc
     4081 actgcccggc attgccatcc tgaaggtggt ccttctaccc accgcgaaca ttcagacggc
     4141 gattgcccaa acggtggccg tcgagcaggc gcagttgaag cagatgccgc caggcgccac
     4201 accgccgctc gtgatcagtt attcggcctc cagtatcccg gtgattcagc tgggactatc
     4261 cagtcccacg ctctccgagc agaacctgaa cgactccgcg ctgaacttcc tgcgcccgca
     4321 actggtgacc attcccggcg cggccgtgcc gtatccgtac ggcggcaaaa gccggctgat
     4381 ttcggtcgat ctggatacgc gcgcgctgtt ggcgaaaggc ctgaccccat ccgacgtggt
     4441 gagcgccttc aacgcgcaga acctgatcct gcccaccggc acggccaaga tcggcatgaa
     4501 ggaatacacg atcaacatga atggatcgcc cgccaccatt gcggcgctca acgacattcc
     4561 ggtgcgcacg ctcaatggtg cgaccactta cctgagagag gtcgcccatg tgcgcgac
//
LOCUS       DATGBK010001654         1631 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_19252, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001654 DATGBK010000000
VERSION     DATGBK010001654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19252"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..796)
                     /locus_tag="VKJ77_23230"
     CDS             complement(<1..796)
                     /locus_tag="VKJ77_23230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="putative baseplate assembly protein"
                     /protein_id="HMC48250.1"
                     /translation="MSSSCEQDDPQLCGCCAGVQQETPEAMTNRPALSAISYRVGRYG
                     TFYASMLAALSGSGVPALAALRTRDSSDFSIAFLDTWAVACDILTFYTERLANEAYLR
                     CAIDDRSVMELAALVGYKPSPGVAASVMLAFSLNSAPGAPDNVTIPAGTRVQSVPGPG
                     QTPQVFETSNDIVALIKQNQMAVQTSIPWSLNNSQTSVWIAGTSNNLNPGDALLFVNQ
                     VFHDQAANVVNGSSAQADFHFVTSVTINAQLKQTLVVWDKPLNWSTK"
     gene            complement(793..1554)
                     /locus_tag="VKJ77_23235"
     CDS             complement(793..1554)
                     /locus_tag="VKJ77_23235"
                     /inference="COORDINATES: protein motif:HMM:NF016736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HMC48251.1"
                     /translation="MGNVGRDTLVHVIAQPGLIAHVRNPLPAAGGVDGETIQHIQQSA
                     PYAFNTQLRCVTEDDYGDQAELIDSVEEARGTFRWTGSWYTAFVSTEASGGNEPDAAL
                     LAAVKQGLELKRMAGTDLEVEGAVIVGLDIAFEICVAADHFRSDVRDALLQLFISGNQ
                     CNGQPGLLAPARFTFGETLYLSPLIAAAQGVEGVIAVTPLKFRRMDASGVDNPLVDGV
                     ARGYLTMARLEIAHCDNDPNRLDLGRFALTMDGGK"
BASE COUNT          304 a          509 c          515 g          303 t
ORIGIN      
        1 tcttggttga ccagttcagc ggcttatccc acaccaccag agtctgtttc aactgcgcgt
       61 tgatcgtcac cgaggtgacg aagtggaagt cggcctgggc agaggagcca ttcaccacat
      121 tggccgcctg gtcgtggaat acctggttca caaacagcag cgcgtcgccg gggttgaggt
      181 tgttgcttgt gccagcaatc cagacagagg tctggctatt gttgagactc caggggatcg
      241 aggtttgaac cgccatctgg ttctgcttga tcagcgcgac gatgtcattg gacgtttcga
      301 agacttgcgg cgtctgcccg ggtcccggaa cgctctgcac gcgggtgccc gcagggatcg
      361 tcacgttgtc cggcgcaccc ggcgcgctgt tgagcgagaa cgccagcatg acggatgccg
      421 ccacgcccgg agaaggcttg tagcccacca gcgcggccag ttccatgacc gagcgatcat
      481 caatggcgca gcgcaggtag gcttcgttcg ccagacgctc cgtgtagaac gtgagaatgt
      541 cgcaggcaac ggcccaggta tcgagaaagg cgatcgagaa gtccgaggaa tcgcgcgtac
      601 gcaatgccgc cagcgccggc acgccggatc cggaaagcgc cgcgagcatg ctcgcgtaga
      661 aagtgccgta acggccgacc cgatacgaga tcgcactcag cgcgggccgg ttggtcatgg
      721 cctcgggcgt ctcctgctgt accccggcac agcagccgca gagttgcgga tcgtcctgtt
      781 cgcaggagga gctcatttgc cgccgtccat ggtgagtgca aaccgtccga gatccaggcg
      841 gttcggatcg ttgtcgcagt gcgcgatctc gaggcgtgcc atcgtgagat atccgcgggc
      901 gacgccgtcg accagcggat tgtccacacc ggacgcatcc atgcggcgga acttcagcgg
      961 cgtcaccgcg atcacgcctt ccacgccctg ggccgctgcg atcagcgggc tcaaatagag
     1021 ggtttcgcca aaggtgaatc tggcgggcgc gagcaaaccg ggctgaccgt tgcactggtt
     1081 gccggagatg aagagctgca gcaatgcgtc gcggacatcg ctgcggaaat gatcggcggc
     1141 gacgcaaatc tcgaaagcga tgtcgaggcc aacgatgaca gcgccctcta cctccagatc
     1201 ggtaccggcc atgcgcttca gctcgagccc ttgctttacc gccgcgagca gcgctgcatc
     1261 cggttcattg ccgccgctcg cttctgtcga gacgaaagcc gtgtaccagc tgcccgtcca
     1321 gcgaaaggtc ccgcgtgcct cctccacgct atcgatcagt tcggcctggt cgccgtagtc
     1381 gtcctcggtg acgcagcgca gctgggtgtt aaaggcatag ggagcgctct gctggatatg
     1441 ctggatggtt tcgccgtcga caccgcccgc cgccggaagt ggattgcgca cgtgcgcgat
     1501 caggccaggt tgcgcaatca catggacaag cgtgtcgcgg cccacgtttc ccacgcgtcc
     1561 attgcctacc cgatacgttg cgacaaaggt ctctccttca tccgcggctg cgccatattg
     1621 accatcgccc a
//
LOCUS       DATGBK010001655         3250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_320291, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001655 DATGBK010000000
VERSION     DATGBK010001655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3250
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320291"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1962
                     /locus_tag="VKJ77_23240"
     CDS             <1..1962
                     /locus_tag="VKJ77_23240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC48252.1"
                     /translation="ELEVARHPTADVFASMYPLVRTFTRSLQDVATLTELVDLAVREV
                     RAMTGFGRVLIYKFDDEGRSHVLAEHIEDGYTSFLNQLFPASDIPSQARALYVKQRVR
                     LVANVDAKAARLVPPVNPATGRATDLTYAALRSFSPIHLEYMRNMGTHASMSVSLVVR
                     GRLWGLISCHDHDARLVPFEVRVAIEHLGQLLSLQIEAKEERAETAYLLRLRRTMSRL
                     MGALAEQDDYLSALKSAPDDLLCFAGSTGAAIVVDGKATLVGSTPDQDTVLALSQWLS
                     SSTSGVYATDALSQAWPRASRHTDTASGILAVPISQIFRNYVLWFRPETTRTITWAGE
                     PVKRVSNQDGSVAPRKDFAPWLETVRNRSIRWHPVELEIAGEFRLGMLNIVLRHAEEL
                     AELANELRRANKELEAFSYSVSHDLSAPLRHIAGYGDLLRESEGDKLSERSKRFLNNM
                     LESARFAGVLVDDLLTFSQMGRAALRPVTVDLNQLVRSVAQEFSAETANRKVEWIIPE
                     LPTVTGDPAFLQIALRNLLSNAVKYTRTRESAKIELSAYSTADEYIVSVRDNGVGFNM
                     KYVNKLFGVFQRLHRAEEFDGTGIGLANVRRIIERHDGRTWAEGREGEGAAFHFSLPK
                     VFRAETAATETGAGKLRRPEPPVPPLPRN"
     gene            2044..2508
                     /locus_tag="VKJ77_23245"
     CDS             2044..2508
                     /locus_tag="VKJ77_23245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC48253.1"
                     /translation="MLKPILLVEDDPSDLELTLMALDKSQLANEVIVARDGQEAIDYL
                     RCEGEWSTRNPGNPAVILLDLKLPKIDGMEVLETIRSNEALKPVPVVMLTSSREEQDL
                     VRSYALGVNAYVVKPVEFNEFVQAIADLGVFWAVLNEPPPGSMRVRRQSAPE"
     gene            2645..>3250
                     /locus_tag="VKJ77_23250"
     CDS             2645..>3250
                     /locus_tag="VKJ77_23250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC48254.1"
                     /translation="MQPLHLLLVEDNALDAELTLTQLERADYKVDVQIVYTEQGFIAA
                     LEMSNFDVILADFVMPVFSGVEALAIARVRVPHTPFIFVSGVLGEEHAVDMLKRGATD
                     YVLKQRLQRLPAVVRRALTESTERQQRIAVERALRETETHFRLLVDALKDYAVITLDQ
                     EGRIRTWNAASERILGFAAHDVVGRSAEVFYGQEDCDTNVFA"
BASE COUNT          608 a          984 c         1029 g          629 t
ORIGIN      
        1 gaactcgaag tggcgcgcca tccgactgcg gacgtgtttg catcgatgta tccgctggtg
       61 cgcaccttca cgcgcagctt gcaggacgtg gcgaccttga ccgaactcgt ggaccttgcc
      121 gtgcgcgaag tgcgcgccat gacaggtttc ggccgcgtcc tgatctacaa attcgatgac
      181 gagggccgca gccacgtgct ggcggagcac atcgaggacg gctacacgtc gttcctgaac
      241 cagctgttcc cagcctcgga tattccgagt caggcacgcg cgttatatgt gaaacagcgc
      301 gtgcggctcg tggcgaacgt ggacgcgaaa gccgcgcggc tcgtgccgcc tgtgaacccc
      361 gcgactggcc gcgcgaccga cctcacttat gcggcgctgc gcagcttctc gccgatccat
      421 ctcgagtaca tgcgcaacat gggcacgcat gcgtctatgt cggtgtcgct ggtcgtgcgc
      481 gggcggctct ggggcctgat ttcctgccac gaccacgatg cgcgcctcgt gccgttcgag
      541 gtgcgagtcg cgatcgagca tttggggcag ctcctgtcgc tgcagatcga ggcgaaggag
      601 gagcgcgccg aaacggcgta tttgctgagg ctgcgacgca cgatgtcgcg gctgatgggc
      661 gccctggccg agcaagacga ctatctttcc gccctcaaat cggcgcctga cgatttgctg
      721 tgcttcgccg gatcgacggg cgccgcgatc gtggtggatg gaaaagccac gctggtgggt
      781 tccacgccgg accaggacac cgtgctcgcg ctctcgcagt ggctttcgtc gagcacgtcg
      841 ggcgtctacg caaccgacgc gctgtcgcaa gcctggccgc gcgcgtcgcg tcatacggac
      901 acggcgagcg gcatcctggc cgtgccaatc tcacagattt ttcgcaacta cgtcctctgg
      961 tttcgtcctg aaaccacgcg cacgatcaca tgggcgggcg agccggtcaa acgcgtgtcg
     1021 aaccaggacg gcagcgtggc accgcgcaag gactttgcgc cgtggctcga gacagtgcgc
     1081 aaccgctcga ttcgctggca cccggtggaa ctggaaattg cgggtgaatt tcggctgggc
     1141 atgctcaaca tcgtgctgcg ccacgcggaa gaactagcgg aactcgcgaa cgaactgcgt
     1201 cgcgcgaaca aggagctcga agcgttttca tattccgttt cgcacgactt gagcgcaccg
     1261 ctgcgacata tcgccggcta tggggatttg ctgcgggaaa gcgaaggcga caaactgtcc
     1321 gagcgcagca agcgcttcct caacaacatg ctcgagtcgg cgcgtttcgc cggcgtgctt
     1381 gtcgacgatc tgctcacgtt ttcgcaaatg ggccgtgccg cgttgcgccc cgtgactgtc
     1441 gacctgaatc agttggtgag atcggtcgcg caggaattta gcgccgagac agcgaaccga
     1501 aaggtggaat ggatcattcc ggagctgccc acggtgaccg gcgatccggc gttcctgcag
     1561 atcgcattgc gtaatctgct ctcgaacgcg gtgaaatata cgcgtacacg ggaatcggcg
     1621 aaaatcgagt tgtcggcgta ttcgacagcc gatgaataca ttgtcagcgt gcgggacaat
     1681 ggcgtcggtt tcaacatgaa gtacgtgaac aaattgttcg gcgtgttcca gcggctgcac
     1741 cgcgctgaag agttcgacgg caccggcatt ggcctggcaa acgtgcgccg gatcatcgaa
     1801 cggcacgacg gccggacttg ggccgaaggc cgcgaaggcg agggcgccgc gttccatttt
     1861 tcgctgccga aggtattcag ggccgaaact gccgccaccg aaaccggcgc cggcaagctg
     1921 cgtaggccgg agccaccggt accgccgtta ccgcggaact gaatgtgccg tgcttgactg
     1981 attaccgagc aattacgggc gattgaaccc gccacctttc attttcaccc gtcatatcgg
     2041 accatgctga aacccatttt gcttgtcgaa gacgacccca gcgatctcga actgacactc
     2101 atggcgctcg acaaaagcca gcttgccaat gaagtgatcg tggcgcgcga cggccaggaa
     2161 gcaatcgatt acctgcgttg cgaaggcgag tggagcacac gcaatccagg caatcccgca
     2221 gtcatcctgc tcgacttgaa gctgccgaaa atcgacggca tggaagtgct cgaaaccatc
     2281 cgttccaatg aagcgctgaa accggttccg gtggtcatgc tgacgtcgtc gcgtgaggag
     2341 caggatctcg tgcgcagcta tgcgctcggc gtgaacgctt atgtggtgaa gccggtcgag
     2401 ttcaacgaat ttgtgcaggc gattgccgat ctcggcgtgt tctgggccgt gctcaacgag
     2461 ccaccgcccg ggtcaatgcg cgttcgccgt cagtccgcgc cggaatgaat ctggtgcaca
     2521 ctggcgtatt cctcctgcac ggtgcccggc gtagcggcct gggcccgctg gtcctttcgt
     2581 tgttttgccc gatgcgacct gcccggcagt atcgcgtgcg ccggttcgcc tgagtgccct
     2641 gaccatgcag cctttgcatc tgcttctcgt agaagacaac gcgctcgacg cggaactgac
     2701 cctgacccag ttggaacgcg ccgactataa ggtcgatgtg caaatcgtct acacggagca
     2761 gggtttcatc gcggcgctcg agatgtccaa cttcgatgtg atcctcgcgg acttcgtgat
     2821 gccggtgttc tccggcgtcg aagcgttggc gatcgcccgc gtgcgcgtgc cgcatacgcc
     2881 gttcatcttc gtctccggcg tgctcggcga ggagcatgcc gtcgacatgc tcaagcgcgg
     2941 cgccaccgac tatgtcctga agcagcgcct gcaacggctg cctgccgtcg tgcggcgtgc
     3001 cttgacggaa agcaccgagc gccagcaacg tattgcggtc gaacgcgcgc tgcgggagac
     3061 ggaaacacac tttcgcttgc tggttgatgc gctgaaggat tacgccgtca tcacgctcga
     3121 tcaggagggc aggatccgga cgtggaacgc ggcgtcggag cgaattctcg ggttcgcggc
     3181 acacgatgtg gtcggccggt ccgccgaagt gttctacggc caggaagatt gcgacaccaa
     3241 tgtgttcgca
//
LOCUS       DATGBK010001656         2018 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_112157, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001656 DATGBK010000000
VERSION     DATGBK010001656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2018
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112157"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2018
                     /gene="treY"
                     /locus_tag="VKJ77_23255"
     CDS             <1..>2018
                     /gene="treY"
                     /locus_tag="VKJ77_23255"
                     /EC_number="5.4.99.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047470 - (1,4)-alpha-D-glucan
                     1-alpha-D-glucosylmutase activity [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malto-oligosyltrehalose synthase"
                     /protein_id="HMC48255.1"
                     /translation="RLAWWRTAADEVNWRRFFDVSTLGGMRVERPEVFEASHALIFRL
                     FTEGLIDGVRIDHVDGLAEPREYCQRLRGRLEELAEHRPENLKQDRTYFVVEKILARG
                     EPVRDDWRIDGTTGYDFMNDVGALLHDPRGAEPLAKSWAELSGRPADFAIEAEAARRK
                     ILSENLSAELDRVARALHRIARDTPITRDFTYSSLRRVVAELVVHFPVYRIYPVGGQR
                     SEEDERFFSQAYTSAKAALAPADFVILDQVAQWLGGPGGDEAVEEKPRERERLLDRGR
                     DRDRDRQSVSVPNQNLQANSAGSNSSGSHRRNAQTLFSQLTSPVAAKAIEDTACYRYG
                     RLISRNEVGADPGEFSLSVDAFHAGNLERAKRFPNAMLNTATHDHKRGEDVRARIAGL
                     SEIPDEWAATLRSWSTLNTPHRRALNGDEHGWAPGAAAEAMLYQTLVGCWPPTLSPDD
                     PDGVKELAERVGAWQLKALREAKLRTSWFAPDEVYENACRDFLFDILAPQRRDGFLGE
                     LPAFVERVARTGAINSFQQTLLRLTSPGVPDLYQGTELWDFSLVDPDNRRPVDFEQRR
                     AWLSEGEAEGAPSEQLKNWRDGRVKLGIVRRALALRAHAHSLFEKGAYVPLTVEGAHA
                     DSVIAFARHAGSAYAVVIATRLADSLLAENDTGLPLVDAAHWGDTAVL"
BASE COUNT          377 a          606 c          664 g          371 t
ORIGIN      
        1 cggctcgcct ggtggcgcac cgccgccgac gaagtgaact ggcggcgttt cttcgacgtc
       61 agcacgctcg gcggcatgcg cgtcgagcgc cccgaagtat tcgaggcatc acatgcgctg
      121 attttccggt tgtttaccga agggctgatc gacggcgtgc gaatcgatca cgtcgatggc
      181 ctcgccgaac cgcgtgaata ttgccagcgc ttgcgtggcc ggctggaaga actcgcagaa
      241 catcggccgg agaacctgaa gcaggaccgc acgtatttcg tcgtggaaaa aatcctcgcg
      301 cgcggcgaac ccgtgcgtga tgactggcgc attgatggca ccaccggcta cgatttcatg
      361 aatgacgtcg gcgctttgct gcacgatccg cgcggcgccg aaccactggc aaaaagctgg
      421 gccgaattgt ctggacgtcc agcggacttt gcgatcgaag ccgaagctgc gcggcgcaag
      481 atcctgtccg agaacttgtc cgccgaactc gatcgcgtcg cgcgagcgtt gcatcggatc
      541 gcacgcgata cccccatcac ccgcgacttc acgtattcat cgttgcgccg ggtcgtggct
      601 gagctcgtgg tgcactttcc cgtgtaccgg atctatcccg tcggtggtca gcgcagcgag
      661 gaagatgagc gctttttctc gcaagcttat acaagcgcca aggccgcgct ggcacccgcc
      721 gattttgtca tcctcgatca agtcgcgcag tggctcggcg gtccgggtgg tgacgaagcc
      781 gtggaagaga aaccgcgtga acgcgagcgc ttgctcgatc gcggccggga tcgggaccgc
      841 gatcgtcagt ccgtcagcgt acctaatcag aatctgcagg cgaacagcgc cggctcgaac
      901 tctagcggtt cacatcgacg caacgcacaa actctgttct cccaactaac ttctccggtg
      961 gccgcgaagg cgattgaaga taccgcgtgt tatcgatacg gccggctgat ctcgcgcaac
     1021 gaagtgggcg ccgatccggg cgagttctcg ttgtcggtcg acgcattcca cgcaggcaat
     1081 ctcgaacgcg ccaaacgctt cccgaacgcg atgctcaaca ccgcgacgca cgaccacaaa
     1141 cgcggcgaag acgtgcgcgc acggatcgcg gggttgagcg agattcccga tgaatgggcc
     1201 gcgacattgc gaagctggtc gacgttgaac acgccgcatc gacgggcgct gaacggcgat
     1261 gaacacggct gggcgccggg cgcggccgct gaagccatgc tgtatcagac gctggtcggc
     1321 tgctggccgc ccacgctctc ccccgacgac ccggacggcg tgaaggagct cgctgaacgc
     1381 gtgggcgcgt ggcaattgaa agcgctgcgt gaagccaagt tacgcacgag ctggttcgcg
     1441 ccagacgagg tctacgagaa tgcatgccgc gattttctct tcgatatcct cgcgccgcag
     1501 cgccgcgatg gttttctcgg cgagttgccg gcattcgtgg agcgtgtcgc acgaaccggc
     1561 gcaatcaata gtttccagca gacgttgttg cggctgacat cgccgggcgt gccggatctt
     1621 tatcagggga ccgaactatg ggatttcagt ctcgtagatc ccgacaaccg gcgaccagtc
     1681 gacttcgagc aacggcgtgc gtggttgagt gaaggcgagg ctgagggagc gccgtcggag
     1741 caattgaaga actggcgcga cggccgggtg aagctgggta ttgtgcggcg cgcgctggcg
     1801 ttgcgcgcgc acgcgcattc gctattcgag aagggcgctt atgttccgct gacggtggaa
     1861 ggcgcgcatg cggacagcgt gattgcattt gcccggcacg cgggcagcgc gtacgcggtg
     1921 gtgatcgcga cacggctggc cgactcgctg ctggctgaga acgatacggg cctgccgctg
     1981 gtggatgccg ctcattgggg cgatacggcg gtccttta
//
LOCUS       DATGBK010001657         1727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_250663, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001657 DATGBK010000000
VERSION     DATGBK010001657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250663"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1383)
                     /locus_tag="VKJ77_23260"
     CDS             complement(<1..1383)
                     /locus_tag="VKJ77_23260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48256.1"
                     /translation="MNKHPSSAHADLGLAVTTATNAAAAHSGLAASTRTRYRFVTLAL
                     ITVVLALSSGDRAAMSVAGSDMAKELRITSVELGYIFSAFSWAYVIFLIPAGWLTDRI
                     GSKKAMFSAIVVWSIFTVCMGLVHFIGLVAPLLLALRFLLGIAESPVGPASGRIIAAW
                     FPASERGVAGAIFNSAQYLSLALFTPLMGWLCHAFGWEYVFIVMGGVGLVIGTIWWKN
                     YYLPIKHPAMSASELDYIRAGDGLVDLEATQKLERTGPKRSQWRDIGSLFKSRMMVGI
                     FIGQYCISAITWFFVTWFPIYLVKDRGFDILQAGFVASIPAAAGLIGGVASGFVSDGL
                     LKKTGSLSIARKGPVIVGFLLSASMILCNYVNTQWLVVGLMSLAFFGKGFGALSWTIL
                     ADTAPREIIGTTGGVFNALGNSAGIVTPVVIGYLLQSTGSFAAALVYVGAHGLIAVLS
                     YGLIVGKIQRY"
     gene            complement(1486..>1727)
                     /locus_tag="VKJ77_23265"
     CDS             complement(1486..>1727)
                     /locus_tag="VKJ77_23265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Dabb family protein"
                     /protein_id="HMC48257.1"
                     /translation="QLVERMRRLDSEIAFVRGWKVSANELDRAICWDYLLESTFDDRR
                     ALEQYLPHPAHVALIADLKQYFDWAAVDFTDSPVT"
BASE COUNT          379 a          531 c          508 g          309 t
ORIGIN      
        1 ataacgctgg attttcccga cgatcagccc gtagctcagc accgcgatca acccatgcgc
       61 gccgacataa acaagggcgg cggcgaacga ccctgtgctt tgcagcaggt aaccaatcac
      121 caccggtgtg acaatgcccg cgctgttgcc cagtgcgttg aacacgccac ccgtcgtacc
      181 gatgatttcg cgaggggctg tgtctgcgag aatggtccag ctcagcgcgc cgaaaccctt
      241 gccgaagaat gcgaggctca tcaggccgac taccagccat tgcgtattca cgtagttgca
      301 gagaatcatg ctcgcgctga gcagaaagcc gacgatgacg ggcccttttc gagcgatgct
      361 cagtgagccg gtctttttca gcaagccgtc ggagacaaaa ccgctagcca cgccgccgat
      421 caatcccgct gccgccggaa tggaggccac gaagcccgct tgcaggatgt cgaagccgcg
      481 atccttgacc agatagatcg ggaaccacgt gacgaagaac caggtaattg cactgatgca
      541 gtattggcct ataaagatgc cgaccatcat gcgactcttg aagagcgagc cgatgtcacg
      601 ccactgcgaa cgtttgggtc cggtgcgctc cagcttctgc gtcgcttcga gatcaacgag
      661 tccatcgcct gccctgatgt aatcgagctc gctcgcactc atggccgggt gcttgatcgg
      721 caggtagtag ttcttccacc agatagtgcc aatcacaagg ccgacgccac ccatcacgat
      781 aaacacgtat tcccagccga acgcgtgaca cagccagccc atcagcggcg tgaaaagcgc
      841 gagcgaaagg tattgcgcac tgttgaagat ggcgccggcc acacctcgct ccgacgccgg
      901 aaaccaggcg gcaatgatcc tgcccgacgc ggggccgacc ggcgactcgg caataccgag
      961 cagaaaccga agcgcaagca acaagggcgc caccagcccg atgaagtgca cgaggcccat
     1021 gcagacggtg aagatcgacc acaccacgat tgcgctgaac atcgctttct tggagccgat
     1081 gcggtccgtc agccagcccg ccgggatcag gaagatcaca taggcccaac tgaacgcgga
     1141 aaagatgtag cccagttcga ccgatgtaat gcgcagttcc ttcgccatgt cggaaccggc
     1201 gacggacatc gctgcacggt cgccggaact gagcgcgagg accaccgtga tcaaggccag
     1261 cgtgacaaaa cggtagcgtg tacgtgtgct cgcggccaga ccgctgtgcg ccgcggctgc
     1321 gtttgtggcc gtggtaaccg ccagccccaa gtccgcgtgt gcggacgacg ggtgcttgtt
     1381 cattgttttg tctccagtcg gctcccgcgg tttcgagcgc agccgtcatg cgtgtgagtg
     1441 aacccgagaa gctgttccgc ttcttatcga accgggttcg aatgttcagg tgaccggtga
     1501 gtccgtgaaa tcgacggcgg cccagtcgaa gtactgtttc agatcggcga tcagcgcaac
     1561 atgtgcggga tgcggcaggt attgctcgag cgctcgccgg tcatcgaagg tggattcaag
     1621 cagatagtcc cagcaaatcg cgcgatccag ttcgttcgcc gagaccttcc atccgcgcac
     1681 gaatgcgatc tcgctgtcca gcctgcgcat gcgctcgacg agttgcg
//
LOCUS       DATGBK010001658         1829 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_88690, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001658 DATGBK010000000
VERSION     DATGBK010001658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88690"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..535)
                     /locus_tag="VKJ77_23270"
     CDS             complement(<1..535)
                     /locus_tag="VKJ77_23270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011494253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HMC48258.1"
                     /translation="MSSEPVITHQPVPRRRLVVIGVVGIAIAVIVVAAGVTLRAVDAR
                     NLKTWTNAQIIPTVNVIHPVSAANGPTLDLPSHLEAYSRAPIFARVSGYLKSWNVDIG
                     APVKAGQLLAVIESPELDQQLLQARADLVSAQANSSLAGTTAKRWQALLGTDSVAQQE
                     VDERTGDYTAKKAAVAAA"
     gene            complement(525..>1829)
                     /locus_tag="VKJ77_23275"
     CDS             complement(525..>1829)
                     /locus_tag="VKJ77_23275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC48259.1"
                     /translation="TIGSQDGDIQIALNEDHHPSAEYVRQMREKLPRLYPGVTFSFPP
                     ADIISQILNFGSPAPVDLQVRGNNLSANFAYANRVLREIRQIPGVVDARIQQAQNSPT
                     FNVDVDRTRAQLLGINERDVTNSLVVNLAGSSQVAPTFWLNNANGVSYPIVMQTPQYN
                     LDSLASLQNLPITSSLQSSAQILGGLATVERTNTNAVVSQYNIQPMVEIFATTQDRDL
                     GAVASDIQRVVQRNAGALPKGSSVALLGQVQTMNSAFAGMLFGLLGAVVLIYLIVVVN
                     FQSWADPFVIVTALPAALAGIVWMLFATQTTLSVTALTGAIMCMGVATANSILVVSFC
                     RERLAVHGDPFKAALEAGFTRFRPVLMTALSMIIGMAPMALAMGEGGEQNAPLGRAVI
                     GGLIFATTASLLLVPVIFCIIHSRPGRAIAPTPVTGGPAHVV"
BASE COUNT          345 a          549 c          615 g          320 t
ORIGIN      
        1 gcgcggccgc tacggccgct ttcttggcgg tgtagtcgcc ggtgcgttcg tcgacttcct
       61 gctgggcgac cgagtcggtg ccgagcagcg cctgccagcg tttagcggtt gtgccggcga
      121 gggaggaatt ggcttgcgcg ctgaccaggt ccgcacgcgc ttgcagtaac tgctggtcga
      181 gctctggcga ctcgatcacc gcgagcaatt gcccagcttt caccggtgcg ccaatatcca
      241 cattccacga cttcagataa ccgctcacgc gcgcgaagat cggcgcacgc gaatacgctt
      301 cgagatgcga cggcagatcg agcgtcgggc cgtttgccgc actaaccgga tggatcacgt
      361 tgacagtcgg gatgatctgc gcgttggtcc aggtcttgag gttgcgggca tcgacagcgc
      421 gcagcgtgac gccggcggcg accacgatca cggcaatcgc gatacccacc acgccgatca
      481 cgacgagtcg ccggcgcggc acgggttgat gggtaataac aggttcagac gacatgagca
      541 ggacctcccg taacgggtgt cggggcaatc gcgcggccag ggcgcgaatg aatgatgcag
      601 aagatcaccg ggaccaggag cagcgacgcg gtggtagcga aaatcaggcc gccgataaca
      661 gcgcggccaa gcggtgcgtt ctgttctccg ccttcgccca tcgcgagggc catgggcgcc
      721 atgccgatga tcatcgagag agcggtcatg aggaccgggc ggaaacgggt gaagccggct
      781 tcgagcgcag ccttgaacgg gtcgccgtga acggctaagc gctcgcggca gaagctgacc
      841 acgaggatgg agttggcggt cgccaccccc atgcacatga tggcccctgt caacgcggtc
      901 accgacagcg tggtttgggt cgcgaacagc atccagacga tgccggcaag cgccgcgggc
      961 aacgccgtga cgatcacgaa cggatcagcc cacgactgga agttgaccac gacgatcagg
     1021 tagatcaaca cgactgcgcc gagcaggccg aacagcatgc cagcgaacgc gctgttcatg
     1081 gtctgcacct ggccgagcag cgcgaccgac gaacccttgg gcagcgcacc ggcgttacgc
     1141 tgcaccacgc gctggatgtc ggatgcgacc gcgccgagat cgcgatcctg ggtggtcgcg
     1201 aaaatctcga ccatcggctg gatgttgtac tggctcacga ccgcattggt gttcgtacgt
     1261 tcgacggtcg cgaggccgcc gaggatctga gcgctgctct gcaggctcga ggtgattggc
     1321 aggttctgca gcgaggcaag cgaatcgagg ttgtattgtg gtgtctgcat cacgatcgga
     1381 tacgacacgc cgttcgcatt gttcaaccag aacgtcggcg cgacctggct cgaccctgcg
     1441 aggttcacga ccaggctgtt cgtgacgtct cgctcgttga tgccgagcag ttgcgcgcgg
     1501 gtacggtcga cgtcgacgtt gaaggtggga gagttctgcg cttgctggat gcgcgcatcg
     1561 accacgccgg ggatctggcg gatctcgcgc agcacccggt tcgcataagc gaagttcgcg
     1621 gacaggttgt tgccgcgaac ctgcagatcg accggtgccg gcgagccgaa gttcaggatc
     1681 tggctgatga tgtccgccgg tgggaacgag aacgtcacgc ccggataaag gcgcggcaac
     1741 ttctctcgca tctgccgcac gtactccgcg ctcgggtgat gatcttcatt caacgcgatc
     1801 tggatgtcgc cgtcctgcga gccgatcgt
//
LOCUS       DATGBK010001659         1601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_88739, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001659 DATGBK010000000
VERSION     DATGBK010001659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88739"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..652)
                     /locus_tag="VKJ77_23280"
     CDS             complement(<1..652)
                     /locus_tag="VKJ77_23280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006763795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC48260.1"
                     /translation="MAGHSKWANIKHKKAATDAKRGKVWTRLIKEIQVAARMGGGEMD
                     TNPRLRLSVEKAYDANMPKDNINRAIQRGVGGVDGATYEEIRYEGYGIGGAAIIVDTM
                     TDNRTRTVAEVRHAFSKFGGNMGTDGSVAFMFDHVGQFLFAPGTSEDKLMEAALEAGA
                     DDVVTNDDGSMEVVCPANDFQKVKDALEAAGFKAEVAEVIMKPQSEVEFTGEEAAKM"
     gene            complement(1088..>1601)
                     /gene="upp"
                     /locus_tag="VKJ77_23285"
     CDS             complement(1088..>1601)
                     /gene="upp"
                     /locus_tag="VKJ77_23285"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010091140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HMC48261.1"
                     /translation="YEITRNLPLTTKRVETPLVTIDSPVIAGKKLAIVPVLRAGIGMS
                     DGLLDLIPSARVGHIGVYRAEDHRPVEYLVRLPPDLEERVFILCDPMLATGYSAVHAV
                     DVMKRRKVLGENIIFVALVAAPEGVKVFSDAHPDVKLYVASLDSHLNEHAYIVPGLGD
                     AGDRLFGTKN"
BASE COUNT          268 a          526 c          450 g          357 t
ORIGIN      
        1 gcattttcgc cgcttcttcg ccggtgaact cgacttcgga ctgcggtttc atgatgactt
       61 ccgccacttc ggccttgaac cctgcggctt ccagcgcgtc tttcaccttc tggaaatcgt
      121 tggcggggca aaccacttcc atgctgccgt cgtcattcgt gaccacgtcg tccgcgccgg
      181 cttcgagcgc cgcttccatc agcttgtctt cggacgtgcc gggagcgaac aggaactggc
      241 cgacgtgatc gaacatgaac gccaccgagc cgtccgtgcc catgttgccg ccgaacttcg
      301 agaacgcgtg gcggacttcc gcaacggtcc gggtacggtt gtccgtcatg gtgtccacga
      361 tgatcgctgc gccgccgata ccgtaacctt cgtagcgaat ttcttcatac gtcgcgccgt
      421 cgacaccccc cacgccgcgc tggatcgcgc ggttgatgtt gtccttgggc atgttggcgt
      481 cgtaggcctt ttcgacggag agccgcaggc gcgggttcgt gtccatttct ccgccgccca
      541 tgcgggccgc gacctgaatt tccttgataa gacgcgtcca gaccttgcca cgcttggcat
      601 cggtcgccgc tttcttatgc ttgatgttgg cccattttga atgacccgcc atacctttct
      661 ccatcgcgcg cgagcttctc tcgcacgcct ctttgtcaat gatgccgccc tatcccgaaa
      721 aggcgctttt cgccggccgg cattctatgt tcgcgccgca tggtcgcagg gctcaaaacg
      781 ccgagcgtgg caaggcgcag gccctgtttc gcggttctgc ggggcggggc cggctgctga
      841 taatccttaa atccacgatt ccgcgaactt gaaccaacac ttccgttgac aacctgctgc
      901 tggccgactg atgtcagcta atccggccag ccaatcctct ctggtaatcc cgtcagacaa
      961 cccaatgcgc gaaccgctta tttggcggac ccgaatttta tcatggcgcg ccgcttcggc
     1021 aggcgttggc cttgctccga cggcgcgcac gttctttcat gtccccgtgc ttgcgcttgg
     1081 ttctgtgcta gtttttcgta ccaaatagcc ggtcgccggc gtcgcccaag cccggcacga
     1141 tatacgcgtg ctcgttcaaa tgcgagtcga gcgaggccac gtacagcttc acgtccgggt
     1201 gggcatccga gaaaaccttc acgccttctg gcgccgcaac cagtgccacg aagatgatgt
     1261 tttcaccgag caccttgcgc cgtttcatta cgtccacggc atggaccgcc gaatagccgg
     1321 ttgcgagcat tgggtcgcac aggatgaaca cgcgctcttc caggtccggt ggcaggcgca
     1381 cgagatattc gaccggccgg tggtcttccg cgcgatacac gccgatatgg ccgacccgcg
     1441 ccgacggaat caggtccagc aacccgtccg acatgccgat accagcccgc agcaccggca
     1501 cgatagccag cttcttgccg gcgatcaccg gcgagtctat ggtgaccagc ggggtttcga
     1561 cacgcttcgt ggtcagcggc aggttgcgcg tgatttcata a
//
LOCUS       DATGBK010001660         1842 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_158405, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001660 DATGBK010000000
VERSION     DATGBK010001660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158405"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VKJ77_23290"
     CDS             <1..216
                     /locus_tag="VKJ77_23290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2946 domain-containing protein"
                     /protein_id="HMC48262.1"
                     /translation="ADARDGSHAPRVAALHDHDLDLFSTHADLDDNGGVFHFAGGVDL
                     ALERIDRADVPGKFGFVTSPAAKAAAS"
     gene            433..912
                     /gene="moaC"
                     /locus_tag="VKJ77_23295"
     CDS             433..912
                     /gene="moaC"
                     /locus_tag="VKJ77_23295"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HMC48263.1"
                     /translation="MSGLTHFDASGEAHMVDVGDKSETRRVAIARGSIVMLPATLALI
                     RDGKAKKGDVLGVARIAAIQGAKRTSDLIPLCHPLALTRVAVDFSIDENLPGVFCEVR
                     VETVGRTGVEMEALTAVQVGLLTVYDMCKAVDRGMTITNVKVLEKHGGKSGDWVAGS"
     gene            complement(1106..>1842)
                     /locus_tag="VKJ77_23300"
     CDS             complement(1106..>1842)
                     /locus_tag="VKJ77_23300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Wzy polymerase domain-containing protein"
                     /protein_id="HMC48264.1"
                     /translation="AKTGLLGMAILLFSVVCWLVRVLRAPHTPARIFALSLLGVLMMH
                     ALVEYPQQYMFYLMPAMLIFGLLETRPLRWVSRSFSYGFYAVLVVLGLASLYPILRDY
                     NRSEVLYYGSQPAEQYRANPSFLFGAWGEYGAATLMPMNSQDLGTKLVMHRQALALLP
                     GETVLRRYAVLQALAGQSQDALDTIARLKIFSTELHDWPQQLADVYQLLDDQGQPLAG
                     FKAELMKMYGVPAPSATDDDSDDGDD"
BASE COUNT          413 a          544 c          537 g          348 t
ORIGIN      
        1 gccgatgccc gcgatggctc gcatgcgccg cgcgtcgccg cgttgcacga tcacgatctg
       61 gatctgtttt ccacacacgc cgatctcgac gataacggcg gtgtattcca ttttgcgggt
      121 ggtgtagatc tggcgctgga acgtatcgat cgagccgatg tgccgggaaa gtttggcttt
      181 gttacgagtc cggcggcgaa agcggcggcc tcgtaaaacc tcctggctat cgcccttccc
      241 cacctcgcaa caagccggtt tggacccatg gcaacttggc tatacggtcg ccggggtaac
      301 gcgcggccat cggctgaaaa cgcttcgaac ggggaagcga aaacgacttg aaaggcttat
      361 cgtagcggcg tgtgcgcgcc tgggtcaccc gcgcgccgct gttatgatga gcgcccgttg
      421 caaggagagc ttatgtccgg acttacacat ttcgatgctt ctggcgaagc gcacatggtc
      481 gatgtcggcg acaaaagcga gacgcgtcgc gtagccatcg cgcgcggttc gatcgtcatg
      541 ctgcccgcca cgcttgcgct gatccgcgac ggcaaggcta aaaaaggcga tgtgctcggc
      601 gtcgcgcgaa ttgcagcgat ccagggcgcg aaacgaacct ctgatttgat cccgttatgc
      661 catccgctgg cattgacgcg agtggcggtg gacttttcca tcgatgaaaa cctgcccggc
      721 gtgttttgcg aagtacgcgt ggaaacggtc gggcgcacag gcgtggagat ggaagcgcta
      781 acggccgtgc aggtgggact gctgacggtt tatgacatgt gcaaagcggt ggatcgcgga
      841 atgacgatca ccaatgtcaa ggtgctggag aagcacggcg ggaaatcggg cgattgggtg
      901 gcggggagtt gatcacgggg cgcctgaata tcgccgcgtg cgctgatcct tggtaaatcg
      961 ctgtcgctgc ttggaaacca acaatatcta gctgagaaaa aggcagttcc aacgtaagtc
     1021 ggaactgcct ttgtttttag cccctatcga tctcttcgac ttcaagactc tcggtcgcag
     1081 cgaagtcatc gatcaaagcg ctgtctcaat catccccatc atcactatca tcgtcagtag
     1141 ccgacggcgc gggcacacca tacatcttca tcaactcggc cttaaaccca gccagcggct
     1201 gcccctgatc gtcgagtaat tgataaacat ccgccagttg ttgcggccag tcgtgaagct
     1261 cggtggagaa tatcttcagc cgggcgatgg tatcgagcgc gtcttgcgac tgtccggcca
     1321 gcgcctgcaa caccgcatag cgtcgcaata ccgtttcccc aggcaacaac gccagcgcct
     1381 gacgatgcat cacgagcttg gtgccgaggt cctggctgtt catcggcatc aatgtcgcgg
     1441 caccatactc gccccatgcg ccgaacaaaa acgacggatt cgcacgatat tgctcagccg
     1501 gctgcgaacc gtaatagagc acttccgagc ggttgtagtc gcgcaagatg ggatacagcg
     1561 aagccagtcc aagcaccacc agcacagcat agaacccata ggaaaacgac cgcgacaccc
     1621 accgcaacgg ccgcgtctcc agcaagccaa aaatcagcat cgcgggcatc aggtaaaaca
     1681 tgtactgctg cggatactca acgagcgcat gcatcatcag cacgcccagc agcgacagcg
     1741 cgaaaatccg cgcaggcgta tgcggcgcac gcagcacacg cacgagccag cacaccacgc
     1801 tgaacaacag gatcgccatg ccgagcagac cggttttcgc ga
//
LOCUS       DATGBK010001661         3047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_88770, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001661 DATGBK010000000
VERSION     DATGBK010001661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88770"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            494..1009
                     /gene="msrB"
                     /locus_tag="VKJ77_23305"
     CDS             494..1009
                     /gene="msrB"
                     /locus_tag="VKJ77_23305"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007744660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HMC48265.1"
                     /translation="MQTRRRFIFAGSVFAAAAFAAFNQRRVLGATGKSGSTADEAFEV
                     VHPDDQWRRLLTPAQYNVLRHEGTERPYSSPLNDEHRSGTFACAGCQLDAFSSRTKFD
                     SHTGWPSFWAPLDHAVATHEDLSFGVSRTEVHCRRCGGHLGHVFDDGPKPTGLRYCMN
                     GLAMTFTPAAA"
     gene            1096..2916
                     /locus_tag="VKJ77_23310"
     CDS             1096..2916
                     /locus_tag="VKJ77_23310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein DipZ"
                     /protein_id="HMC48266.1"
                     /translation="MLLIVLAYLGGALTILSPCILPVLPFVFSRADQPFVRSGVPLLA
                     GMAITFAAVATLAAVGGGWVTQANQYGRWLAVALLGIFGLTLLLPSFAERLMRPFVSA
                     GNRLSEFARADGQQVRASSSFLLGIATGLLWAPCAGPILGLVLTGAALRGASVGTTLL
                     LVAYAAGAATSLAVALLIGGRVFAAMKRSLGAGEWIRRGIGAAMLLGVVAISLGLDTG
                     VLARVSTVATGGIEQKLVDSLSGGSMPTKAANNDTAAPTQTTAATDAAAGPAMMRAAA
                     PAEAPQSLPVEGELPSLSGAVQWLNSPPLTAQDLRGKVVLVDFWTYSCINCLRSLPYV
                     KAWAQKYRDQGLVVIGVHAPEFAFERNVDNVKRATHDLGVDYPVAIDNNYAIWRAFGN
                     QYWPAHYFVDAKGQIRFHHFGEGDYAHSEQVIQQLLAEAGHANTGAMVSDDTAAKGVQ
                     MAADNADMQSPETYVGYERAENFGGRGGESHDRVHTYAAPAQLALNEWGLAGAWNVGS
                     EQATLAASTGTIVYRFHARDLHLVLGPGKDNKPVRFRVSIDGAAPGNAHGSDVMADGT
                     GTVTEQRLYQLVRQSGDVTDHTFAIEFLDPGVQAYAFTFG"
BASE COUNT          568 a          887 c          939 g          653 t
ORIGIN      
        1 tgaacccctc cttctcgcga atcctgacat gaacacgctt cgccaccagt gctctcaggc
       61 aagcaccttc tgaccgccaa agcgaccgcc cggatcaaac ctgtcccaag catgtcactc
      121 gatgtcgacc ccgttacgct atatttcggt aaatatagcg taacgaaaaa tgcgacatgc
      181 ctgtaggggt atccatagac tggccaaacc aatttgatgg ggcacgtgta accggccgcg
      241 gcccctggac gaactagcta acagacgcac agagaatgtt ggggttgata aaaccgcacc
      301 acattcaaga cccggttgaa ataggccaca ggctttcaag attcatcacg atttttccgt
      361 tccgacggat taaagccgtg attgaagtgt ttgcctgtta gaaccctaac cgcggttccc
      421 tgtagcgacc cggaagccga ttcatacaaa gaacggcctt ccttaaaaag ttggttttgt
      481 tcaggagcac atcatgcaga cccggcgccg ttttattttt gcaggcagtg tttttgcggc
      541 agcggcgttt gccgcgttta atcaacgtcg cgtgttgggt gcgaccggaa agagcggcag
      601 caccgccgac gaagcgttcg aggtcgttca ccctgacgac caatggcgcc gcctgctgac
      661 gcccgcgcaa tacaacgtgc ttcggcacga aggcacagaa cgtccttata gcagtccctt
      721 gaacgacgaa catcgtagcg gcacgttcgc gtgcgccgga tgccagctcg atgccttttc
      781 gtcgcgtacg aagttcgaca gccacaccgg ctggccgagc ttctgggcac cgctcgacca
      841 cgcggtggca acgcatgagg acttgtcttt cggcgtgtcg cgtactgagg tgcattgccg
      901 gcgttgcggt ggacatctgg gccatgtctt cgatgacggc cccaagccca caggtttgcg
      961 ctattgcatg aacggcctgg cgatgacgtt cacacccgcc gctgcctgac taagttgcct
     1021 gatccgctgc acaaactact gaaactgctt tgcgctgaac cccgatcacc taaagaccta
     1081 agaaccttcc cgctcatgtt actcattgtc ctggcttatc ttggcggcgc gctcactatc
     1141 ctgagcccct gcatcttgcc cgttttgccc ttcgtgtttt cgcgggcgga tcaaccgttc
     1201 gtgcgcagcg gcgtgccttt gcttgccggc atggcgatca ccttcgcagc ggtcgcgacg
     1261 ctcgctgcag taggtggcgg gtgggtgacg caggcgaacc agtacggccg ctggcttgct
     1321 gtcgcgttgc tgggcatctt cggtttgacg ttgctgctgc cgagcttcgc cgaacgcctc
     1381 atgcgtccat ttgtcagcgc gggcaaccgg ctgtccgaat ttgcgcgagc tgacggacaa
     1441 caagtgcgcg cgagttcgtc gttcctgctg ggcattgcga ccggtttgct gtgggcgccg
     1501 tgcgccggcc cgattttggg cctggtattg acaggcgcgg cattgcgtgg cgcgagtgtc
     1561 ggcacgacgc tgctgctggt cgcttacgcg gcaggggccg cgacgtcgct ggcggtggcg
     1621 ttgctcatcg gcggccgggt gtttgccgcc atgaagcgct cgcttggggc gggcgagtgg
     1681 attcgtcgcg gtataggcgc tgcgatgttg ttgggtgttg tcgccatttc gttaggactc
     1741 gataccggcg tgctcgcgcg tgtgtctacc gttgcaacgg gtggcatcga acagaaactg
     1801 gtggacagct tgtcgggcgg ttctatgccg acgaaagccg ccaacaacga cacggccgca
     1861 cctacgcaga ccaccgcggc aaccgatgcc gccgccgggc cggcgatgat gcgtgcagcc
     1921 gctcccgctg aagcgccgca gtcgctgccc gtggagggcg aattgccatc gctgtccggc
     1981 gccgttcaat ggcttaattc gccgccgctg acggcgcagg atttgcgcgg caaggtcgta
     2041 ctcgtcgact tctggactta ctcgtgcatc aactgtttgc gctcgttgcc ttacgtgaaa
     2101 gcgtgggcgc agaagtatcg cgatcaaggt ctggtcgtga tcggcgtgca tgcgcccgag
     2161 tttgcgttcg agcgcaacgt ggataacgtc aagcgcgcga cgcacgatct gggtgtcgac
     2221 tatccggttg ccatcgataa caactacgca atctggcgcg catttggcaa ccagtactgg
     2281 ccggcgcatt attttgtcga tgccaaaggg cagattcgct tccatcactt tggcgaaggc
     2341 gactatgcgc attcggagca ggtgatccag cagttgctgg ctgaagccgg tcacgcgaat
     2401 acgggcgcga tggtcagcga cgacaccgca gcgaagggcg ttcagatggc cgccgataac
     2461 gccgacatgc agtcacctga aacctatgta ggctacgagc gcgcggagaa ctttggcggt
     2521 cggggcggcg aatcgcatga ccgtgttcat acgtacgccg cgcctgctca acttgcgctg
     2581 aatgaatggg gtctggcggg cgcatggaac gtgggttcgg agcaagcgac gctggcggct
     2641 tcgacaggga ccatcgttta tcgattccat gcgcgtgatt tgcatctcgt gctgggacct
     2701 ggaaaggaca acaagccggt gaggtttcgc gtcagcatcg acggcgctgc gcctggcaat
     2761 gcgcacggtt cggatgtcat ggccgatggc accggcacgg tcacggagca gcgcttatat
     2821 caactcgtac gccagtcggg cgatgtgacg gatcacacct tcgccattga attcctggac
     2881 ccgggtgtcc aggcgtacgc gttcacgttt ggttgagcgg tgagaagtga acgcctagca
     2941 cgccgcgtta tgcgtcgagg aagcggtaga tcagcaaacg gcctttatag gcggcggtat
     3001 cgtcgaaggc gattttatcc agccgttcct cgcgcatctg gaagccg
//
LOCUS       DATGBK010001662         4597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_297319, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001662 DATGBK010000000
VERSION     DATGBK010001662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4597
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297319"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /locus_tag="VKJ77_23315"
     CDS             complement(<1..480)
                     /locus_tag="VKJ77_23315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004525866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HMC48267.1"
                     /translation="MHRITNTGRVNLGHLFWLRSLAIIGQLVTIAVVQAFYGAHLPLA
                     AMLTVVVLEVLFNALTWVRVARAQPETNLELFGQLWVDLGALSALLFLSGGATNPFVT
                     LYLPSLAIASAVLPWRLMAWLALFAVVCYSLLTVSYVPLNMEDPLNLFEYFRIGLWVN
                     "
     gene            589..2298
                     /locus_tag="VKJ77_23320"
     CDS             589..2298
                     /locus_tag="VKJ77_23320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HMC48268.1"
                     /translation="MTNSPSSRPNQLLSEAPQTGADQDSIIPRALNAFIDQARSANAQ
                     GNQVERAVWLQAALMLQSDRPETGLDLIDAMLKQNRIGDGIQLAAQLVDRHPQHALAL
                     WHLGYALQLANRHADAIPFYERAHAINPAVPTLRNNLAVAYEVTGGEGKALTMLEEAV
                     AANAQDIEAWTNLSRIYPRRRELEHALAAGKRAVEINPSNALALSNYSLALKEAQRWQ
                     EATEAAEAAVNIAPDMQRLPFNLSILDLVQGNYARGWANFESRWDGSSELRNLHPNFA
                     VPRWNGETLRGKTLLLWGEQGFGDALQFSRFIPMLAKKVHAQGGTLVWAAFKAVHPLM
                     ARMAPKGVECLPHDGPLPAFDFHFPLLSLPLHFGIDADTIPAKRAYLSADADLATDWR
                     TEFAADKRLRVGLVWSGSEGHQRNMFRSVGIERYAKAFSGIENVAFFSLQKDASGAVS
                     TARDGGFEIADRTGKFETFDDTAAFIDSLDLVITVCTSVAHLAAALGKPTWILLDTNP
                     HWVWQLERTDSPWYPTATLYRQKEFSKWEPVMDAVARDLTALAATHTGAAPRKRAAKK
                     AAV"
     gene            complement(2446..2781)
                     /locus_tag="VKJ77_23325"
     CDS             complement(2446..2781)
                     /locus_tag="VKJ77_23325"
                     /inference="COORDINATES: protein motif:HMM:NF025733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich CWC family protein"
                     /protein_id="HMC48269.1"
                     /translation="MGLAREIIMRSGMRGWVETWRFGNGRIARNAARDCVLRFQKACP
                     DPIMRSTDPAPQRCALCGAFFRCAQQTGDAQCWCAALPALPAERLNPRLTCLCPDCLR
                     EETQRSINM"
     gene            2902..3801
                     /gene="argB"
                     /locus_tag="VKJ77_23330"
     CDS             2902..3801
                     /gene="argB"
                     /locus_tag="VKJ77_23330"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006490510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HMC48270.1"
                     /translation="MSELPDLTQIAPTLKAEILAEALPYIRQYHGKTIVIKYGGNAMT
                     EERLKQGFARDVILLKLVGINPVIVHGGGPQIDQALKKIGKQGTFIQGMRVTDEETME
                     VVEWVLGGEVQQDIVTLINHFGGHAVGLTGKDGGLIHARKLMMPDRDNPGEFIDIGQV
                     GEVEAINPAVVKALQDDAFIPVISPIGFGEDGLSYNINADLVAGKLAVVLNAEKLVMM
                     TNIPGVMDKAGNLLTDLSAREIDALFADGTISGGMLPKISSALDAAKSGVRSVHIIDG
                     RIEHSVLLEILTEQPFGTMIRSH"
     gene            3848..4573
                     /locus_tag="VKJ77_23335"
     CDS             3848..4573
                     /locus_tag="VKJ77_23335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HMC48271.1"
                     /translation="MRSSRRRLSTHKRPVWLFDLDNTLHHASHEIFPAINRGMTQYII
                     DRLGVDVDEANRLRTGYTQRYGATLLGLVRHHPVDAADFLHVVHTFADLGSMVRAERG
                     LARMIRGLPGRKIVLTNGPSIYAHAVLNELGIAKLFERVIAIEDMQDRSGYWRAKPDA
                     GMLRRAMRRAHVPLSDAVLVEDTRGHLKRYKRLGIRTVWITGHLPSVLNASGAKSLRS
                     PTSGRPHYVDLKIRSLKGLRGLR"
BASE COUNT          965 a         1405 c         1358 g          869 t
ORIGIN      
        1 attcacccac agcccaatgc ggaaatattc gaacaaattc agcggatctt ccatgttcag
       61 cggcacgtag ctgaccgtca gcaacgaata acagacgacc gcgaacaacg cgagccaggc
      121 catcagccgc cacggcagca ccgcagaagc aatcgccagc gacggcaggt acagcgtgac
      181 aaacggattc gtggcgccgc cgctcaggaa cagcagggcg gacagcgcgc cgagatcgac
      241 ccagagctga ccgaacagtt cgagattcgt ttcaggctgc gcgcgcgcaa cgcgtaccca
      301 tgtcagcgcg ttgaacaata cctccagcac gacaactgtc agcatggcag ctaatgggag
      361 atgcgcgcca taaaacgcct gtacgacggc gattgtcacc agttgaccga tgattgccag
      421 gctgcgaagc caaaacaggt gaccgagatt gacgcggcct gtgttcgtta ttcgatgcat
      481 cgcggtgaat ttcacctcaa atttcagatt agtctaatgg ttggacttag ccggttgccg
      541 caacatctag cgttgtctcg tacagggcgg ccaggccgca tacacaaaat gactaacagc
      601 ccatcctccc gccccaatca gcttctcagc gaagcgccgc aaaccggcgc cgatcaagac
      661 agcattatcc cgcgtgcgct gaacgcgttc attgaccaag ctcgcagcgc gaacgcgcaa
      721 ggcaatcagg tcgagcgcgc cgtgtggctg caggccgcgc tgatgttgca atctgaccgg
      781 ccggagactg gcctcgacct gatcgatgca atgctgaagc aaaaccgcat cggcgacgga
      841 attcaactcg cggctcaact cgtcgatcgt catccgcaac acgcgctcgc gctctggcat
      901 ctcggttatg cgctccaact cgccaaccgt cacgccgatg cgatcccttt ctacgaacgc
      961 gcccacgcga tcaatccagc cgttccaacc ctgcgcaaca acctggcggt cgcctacgaa
     1021 gtcacgggcg gcgaaggtaa agcgctgacc atgctggaag aggccgttgc ggcgaatgcc
     1081 caagatatcg aagcgtggac aaatctgtcg cgcatctatc cgcgccgccg ggaactcgag
     1141 catgcgcttg cggccggcaa gcgtgcggtt gagatcaatc cgtcgaatgc gctcgcgttg
     1201 tcgaactaca gtctcgcgtt gaaagaagcg cagcgctggc aggaggccac tgaagccgca
     1261 gaagcggcgg tcaatatcgc gcccgacatg cagcgtcttc cgttcaatct ctccattctc
     1321 gatctcgtgc agggcaatta cgcccgcggc tgggccaatt tcgagtcgcg ctgggacggt
     1381 tcaagcgaac tgcgcaactt gcaccccaac ttcgcggtgc cgcgatggaa cggcgaaaca
     1441 ctgcgcggca agaccttgtt gctgtggggc gagcaaggtt tcggcgacgc gctgcagttc
     1501 tcgcgtttca tcccgatgct ggcgaaaaag gttcacgcgc agggcggcac gctagtgtgg
     1561 gctgcgttca aagcggtgca tccgctgatg gcgcgcatgg cgccaaaggg cgtcgaatgc
     1621 ctgccgcacg acgggccgtt gcccgcgttt gacttccatt tccctctgct gagcctgccg
     1681 ctgcatttcg gcatcgacgc ggacaccatt ccggcaaagc gcgcgtatct ttccgccgat
     1741 gccgacctcg ccaccgactg gcgcaccgaa ttcgccgccg acaaacgcct gcgcgtcggt
     1801 ctcgtatgga gcggcagcga aggccatcag cgcaacatgt tccgaagcgt gggcatcgag
     1861 cggtatgcga aagcgttcag cgggatcgag aacgtcgcgt tcttctcgct gcagaaggat
     1921 gcgtcgggcg cggtatccac ggcccgggac ggtggttttg agatcgcgga tcgcaccggc
     1981 aagtttgaga cattcgacga cacggcagcg ttcatcgatt cactcgatct cgtcattacc
     2041 gtttgtacga gcgtggcgca tttggcggcg gcgcttggca agccgacctg gattctcctc
     2101 gacaccaatc cgcactgggt ctggcaactg gaacgcactg acagcccgtg gtatccgacg
     2161 gcgacgctgt atcggcagaa ggaattctcg aagtgggagc cggtgatgga tgccgtcgca
     2221 cgtgatctga ccgcgctcgc ggccacgcat acgggggcgg cgccgcgtaa gcgggcggcg
     2281 aagaaagcgg cggtgtaagc gctacagggt tccaagtcag taaaaaacgg cgatccggca
     2341 acgaatcgcc gtttttttac gtgctcgatt cctccactca ggccattccg ccgatacaaa
     2401 accacctgct cgtaaattcc ggcaactcag cgacgaccgc gccgttcaca tgtttatgct
     2461 acgttgcgtt tcttcacgca aacaatccgg gcaaagacac gtcaaacgcg gattcaagcg
     2521 ctcggccggc aaagccggaa gcgctgcgca ccagcactgc gcatcgccgg tttgctgagc
     2581 gcagcggaaa aacgctccgc acagagcgca gcgttgagga gcggggtcgg tggaacgcat
     2641 gattggatcg gggcaagcct tttgaaaacg cagcacacag tcacgagccg cattgcgcgc
     2701 gatgcggccg ttgccgaagc gccacgtttc gacccaccca cgcatgcccg atcgcattat
     2761 tatttcacgc gccaacccca tactggtgcg accagaggct aactttcacc cgccgccgga
     2821 atgctatcgg aaacgcatga tgcagcgcgt cagtcctgta caattccgcc tgtttaaact
     2881 gctcttcgcc ttatcgccgc catgtccgag cttcccgacc ttacgcagat cgcgccgacc
     2941 ctgaaagccg aaatcctggc cgaggcgttg ccctatattc gccagtatca cggcaagacg
     3001 atcgtgatca aatacggcgg caatgccatg accgaggagc gcctgaaaca gggcttcgcg
     3061 cgcgacgtga tcctgctgaa gctggtcggc atcaatccgg tgatcgtgca cggcggcggt
     3121 ccgcagatcg accaggcgct caagaagatc ggcaagcagg gcacgtttat ccagggcatg
     3181 cgcgtcaccg acgaagagac catggaagtg gtcgaatggg tgctcggcgg cgaagtgcag
     3241 caggacatcg tcacgctgat caatcatttc ggcggccatg cggtcggcct caccggcaag
     3301 gacggcggcc tgatccacgc acgcaagtta atgatgccgg atcgcgacaa tccgggcgaa
     3361 ttcatcgata tcggtcaggt gggtgaagtc gaagccatca atccggctgt ggtgaaggcg
     3421 ctgcaagacg acgcgttcat tccggttatc tcgccaatcg gcttcggtga agacggtttg
     3481 tcttacaaca tcaacgccga tctggtcgcg ggcaagcttg ccgtggtgct gaacgccgag
     3541 aagctcgtga tgatgacgaa catccctggc gtgatggaca aggccggcaa cctgctgacc
     3601 gatctgtcag cacgcgaaat cgacgcgctt ttcgccgatg gcaccatttc cggcggtatg
     3661 ctgcccaaga tttcatcggc gcttgatgct gcaaagagcg gagtgcgctc ggtgcatatc
     3721 atcgatggtc gaatcgagca ttccgtgctg ctcgagatcc tgaccgagca gccgttcggg
     3781 accatgattc gctcacattg aacgtggctc attgaacgtg gactctgccg gcgctcgagt
     3841 tgagcttttg cgttcctccc ggcgccggct gagcacgcac aagcgccccg tctggttatt
     3901 cgatctcgac aacacgctgc accacgcgtc gcatgagatt ttccccgcga tcaatcgcgg
     3961 gatgacgcag tacatcatcg accggttggg cgtggatgtt gacgaagcca accggctgcg
     4021 caccggttat acgcagcgat acggcgccac cctgctcggc ctggtgcgcc atcatcctgt
     4081 cgatgccgcc gacttcctgc acgtcgtcca taccttcgcc gatctcggat cgatggttcg
     4141 tgccgaacgc ggtctcgcgc gaatgatccg cgggcttccg ggacggaaga tcgtgttgac
     4201 caacgggcct tcaatttatg cccacgccgt gctcaacgaa ctgggcatcg ccaagctgtt
     4261 tgagcgcgtg attgccattg aggatatgca ggatcgaagc ggttactggc gagcaaagcc
     4321 cgatgcggga atgcttcggc gcgcgatgcg gcgggctcat gtgccgctgt ccgacgcggt
     4381 tcttgtagaa gatacgcgcg ggcatttgaa acgctataag cgtttaggta ttcgcacggt
     4441 ctggatcacg gggcatctgc cgtcggtttt aaatgccagc ggagcaaagt cgctccggtc
     4501 accgaccagc ggccggcccc attacgtcga tctcaagatt cggtctttga aaggcttgcg
     4561 cggtctccgc tagaccaggc gtatctcgag tcacctt
//
LOCUS       DATGBK010001663         2252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_66408, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001663 DATGBK010000000
VERSION     DATGBK010001663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66408"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1638
                     /locus_tag="VKJ77_23340"
     CDS             <1..1638
                     /locus_tag="VKJ77_23340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017331750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HMC48272.1"
                     /translation="IGLMNIVVPLQIGARDVAFPFINSLSFWMTAIAAMLMNISLVIG
                     DFAQTGWLAYPPLSELQFSPGAGVDYYLWSLQLSGIGTVLTGINFFVTILKMRAPGMT
                     FMKMPVFTWTALCSNVLILATFPILTATLALLALDRYLGMHFFTNDAGGNAMLYLNLI
                     WAWGHPEVYILVLPAFGIYSEVVATFAKKPLFGYKTMVYATCSIMVLSLLVWLHHFFT
                     MGSGANVNAFFGIMTMIIAIPTGVKIFNWLFTIYKGRLEFSSPVLWTIGFMITFTVGG
                     MTGVLLAVPGADFVLHNSLFLIAHFHNAIIGGVVFGYLAGFTYWFPKAFGFKLNETLG
                     KCAFWCWFVGFWTAFMPLYVLGFMGATRRMNHYDTPGWQPYMVVALIGALIILAGVVF
                     QIAQVVVSVVKRNSPAYKDVTGDPWNGRTLEWATSSPPPVYNFAVVPVVHELDAFAHM
                     KERGRTRHAVEDYRDIHMPRNTSAGLFVGLFSLAIGFALVWHIWWLAIAGLLGVVVTL
                     ILRSYDNDIDYTISAETVAGMDGTPTSTRTLDLQEAL"
     gene            1638..2246
                     /gene="cyoC"
                     /locus_tag="VKJ77_23345"
     CDS             1638..2246
                     /gene="cyoC"
                     /locus_tag="VKJ77_23345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011657331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009486 - cytochrome bo3 ubiquinol oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0015990 - electron transport coupled proton
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit III"
                     /protein_id="HMC48273.1"
                     /translation="MLQKTIPLDLSESHDDHGASNTVLGFWVYLMTDCIIFASLFAVF
                     AVMGHQFAGGPSGKDVFELPGVMLETAILLLSSITFGFGMLAAHKGKSTALLAWLGVT
                     FVLGAVFIGLEIHEFSLLIAQGYGPDRSAFLSAFFTLVATHGLHVTVGLIWMAVLAVQ
                     VIGNKKVTQRDLTRLTCLSLFWHFLDIVWICVFTFVYLTSVV"
BASE COUNT          378 a          640 c          681 g          553 t
ORIGIN      
        1 atcggtttga tgaacattgt ggtgccgctg caaatcggcg cgcgcgacgt ggcattcccg
       61 ttcatcaatt cgctgagttt ctggatgacc gcgattgccg cgatgctgat gaatatctcg
      121 ctggttatcg gagatttcgc acaaaccgga tggctcgcgt atccgccgtt gtcggagctg
      181 caattcagtc cgggggcggg tgtcgactac tacttatgga gtctgcagct ttccggcata
      241 gggactgtgc tgaccggcat caatttcttc gtgacgatcc tcaagatgcg cgcgccgggc
      301 atgacgttca tgaagatgcc ggtgttcacg tggaccgcac tgtgctcgaa cgtgctgatt
      361 ctcgcgacgt tcccgatcct caccgcaacg ctcgcattgc tcgcgctcga ccgttacctc
      421 ggcatgcatt tcttcacgaa tgatgccggc ggtaacgcca tgctttacct gaacctgatc
      481 tgggcgtggg gccatccgga ggtgtacatc ctggtgttgc cggcgttcgg catctactcg
      541 gaagtggtgg ctacgttcgc gaaaaagccg ctgttcggct acaagacgat ggtctatgca
      601 acgtgctcga tcatggtgct gtcgctgctc gtgtggctgc atcacttctt cacgatgggt
      661 tccggcgcga acgtgaatgc gttcttcggg atcatgacca tgatcatcgc cattccgacg
      721 ggggtgaaga tcttcaactg gctgttcacc atctataagg gccggctgga gttttcgtcg
      781 ccggtgttgt ggacgatcgg cttcatgatc acgttcaccg ttggcggcat gacgggcgtg
      841 ttgctggccg tgccgggcgc tgacttcgtg ctgcacaaca gcctgttcct gatcgctcac
      901 ttccataacg cgattatcgg cggcgtggtg ttcgggtatc tcgccggctt cacgtactgg
      961 ttcccgaagg cgttcggttt caagctgaac gaaacgctcg gcaagtgcgc gttctggtgc
     1021 tggttcgtag gcttctggac cgcgttcatg ccgctgtacg tgctcggttt catgggcgcg
     1081 acgcgccgca tgaatcacta cgacacgccg ggctggcagc cgtacatggt cgttgcgttg
     1141 attggtgcgc tgatcatcct cgcaggcgtg gtgttccaga tcgctcaggt tgtcgtcagc
     1201 gtcgtgaagc gcaactcgcc cgcgtacaaa gacgttactg gcgacccgtg gaacggccgc
     1261 acgctcgaat gggcgaccag ttcgccgccg cccgtctata acttcgcggt cgtgccggtg
     1321 gtccacgaac tcgacgcgtt tgcacacatg aaggaacgcg gccgcacacg ccacgctgtt
     1381 gaggattatc gcgacatcca catgccgcgc aacacaagcg ctggtctgtt tgttggcttg
     1441 ttcagcctgg ctatcggttt tgcgctggtc tggcacatct ggtggctcgc catcgcgggg
     1501 cttctgggcg tggtcgtcac gctgatcttg cgtagctatg acaacgacat cgactacacc
     1561 atttccgctg aaaccgtcgc cggcatggac ggcacgccga cgtcaacgcg gacgctggac
     1621 ctgcaggagg cactgtaatg ctgcaaaaga ccatcccact cgatttgtcg gaatcacacg
     1681 atgaccacgg tgcgtcgaac accgtgctgg ggttctgggt gtacctgatg accgactgca
     1741 ttatctttgc gtcgttattc gcagtgttcg ctgtcatggg ccatcagttc gccggcggcc
     1801 cttccggcaa ggacgtgttc gagcttcccg gggtcatgct ggaaacggcc atcctgttgc
     1861 tgagcagtat cacgttcggc tttggcatgc tcgccgctca caagggcaag tcgaccgcgc
     1921 tgctggcgtg gctcggcgtt acgttcgtgc tgggcgcggt gtttatcggg ctggaaatcc
     1981 acgagttcag cttgctgatc gcgcagggct acggacctga tcgcagtgcg tttttgtcag
     2041 cgttcttcac gctggtcgcg acgcacggct tgcacgtaac cgttggcctg atctggatgg
     2101 cggtcctggc ggtgcaggta atcggcaaca agaaagtcac ccaacgcgat ctgacgcgcc
     2161 tcacgtgtct cagccttttc tggcactttc tggacatcgt gtggatttgc gtctttacct
     2221 ttgtttatct gacgagcgtc gtataaatgg ca
//
LOCUS       DATGBK010001664         2846 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_297414, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001664 DATGBK010000000
VERSION     DATGBK010001664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2846
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297414"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..903)
                     /locus_tag="VKJ77_23350"
     CDS             complement(112..903)
                     /locus_tag="VKJ77_23350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018437307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48274.1"
                     /translation="MSTLDIRGLGVTYEGAATAALEGVDLQIDSGEFVVALGASGCGK
                     TTLLNCLAGFIDPTAGEARLNDEPIVGPGAERGVVFQKYALMPWLDVIDNVALGLRFQ
                     GVGRTRRREIARETLALVGLEKHANARVYALSGGMQQRVGIARALASDPQVLLMDEPM
                     GALDALTRETMQELVLDVWGRTRKTIFFITHSVEEALFLATRLVLMTPGPGRIAESHA
                     LPFARQFLESRDARAVKSSPAFIEWRERLVRRLHDGSHTTLQEVT"
     gene            complement(900..1919)
                     /gene="tauA"
                     /locus_tag="VKJ77_23355"
     CDS             complement(900..1919)
                     /gene="tauA"
                     /locus_tag="VKJ77_23355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015411 - ABC-type taurine transporter
                     transporter activity [Evidence IEA];
                     GO_function: GO:0030977 - taurine binding [Evidence IEA];
                     GO_process: GO:0015734 - taurine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC48275.1"
                     /translation="MKRFFSSLRACAGVALFAAAASAAHAQSREVVIGYQDMVVPWRY
                     AQVSGAVENATGYKVTYRKLGSGADVIRALASGSIQLGEAGSSPIAAGLSQGVDISLF
                     WILDNINDAEALVARDGSGVTKISDLKGKKIGLPFVSTSHFHALVALQNAGVDPSTVK
                     ILNLRPPEVAAAWERGDIDATYIWDPVLAKVKKNGKVLITSGEVAKETGKATFDGFAV
                     SRKFAQDNDAFVTGLVKVLAATDAQYRDNKSAWTAGSKEVEGVAKESGATAADVPASL
                     ALYAFPTLTDQASSAWLGGGAQSGAAKSLAATAAFLKAQGTIQNLLPDYSVGVDPRFV
                     QQASR"
     gene            complement(2066..2830)
                     /locus_tag="VKJ77_23360"
     CDS             complement(2066..2830)
                     /locus_tag="VKJ77_23360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007739454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC48276.1"
                     /translation="MRLPPGIYGVIGIVAVGAALWSLAPEAGSRGETLARLVEWAPAL
                     AHGFAMNVLISIGAIFIGTLIGLLTGALALSQSFAGRLARLWIVAFRNAPWLVLIYFT
                     TYVFPFEIRVFGTTVPFPDWLKVMLGLALPASANIAEVFRGAVASIPSAQWEAAASLA
                     FSRWQILLKIVVPQCVRRMLPPWMNVYAIITMGTALSSLVGIHDLLDTAQIASSTVAR
                     SSFTVLTYVATLVIFFAYCYPISWLTRTFEKRLRTA"
BASE COUNT          563 a          886 c          877 g          520 t
ORIGIN      
        1 ccacactcag gactgcggtc ggtccttcgc ccggaaggcc gcgtcgtggc ttgcgtcttt
       61 gcttaggtcg tgacatggcg gcagcgggtg gcagagagtc gatcgaactc atcaggtcac
      121 ctcctgcagc gtagtgtggg acccgtcatg cagtcgccga accagccgct cgcgccattc
      181 gataaacgcg ggcgatgact tcaccgcgcg cgcatcgcgt gattcgagaa actgccgcgc
      241 gaacggcaac gcgtggcttt cggcgatccg gccgggaccc ggtgtcatca ggaccagccg
      301 cgtcgccagg aacaacgctt cttccacgct atgcgtgatg aagaaaatgg ttttgcgggt
      361 gcggccccat acatcgagca cgagttcctg catggtctcg cgcgtcagtg catcgagcgc
      421 gcccatcggt tcatccatca gcagcacctg tggatcgctg gcaagcgcgc gtgcgatacc
      481 cacgcgttgc tgcatgccgc ccgagagcgc atagacccgc gcattcgcgt gtttttccaa
      541 gccgaccagg gccagcgttt cacgcgctat ctcgcgacgc cgcgtccggc ccacgccctg
      601 aaaacgaagc ccgagcgcga cgttgtcgat cacatcgagc cacggcatca gcgcatattt
      661 ctgaaacacg acaccgcgtt cggcaccggg cccgacgatc ggttcatcgt tcagtcgcgc
      721 ctcgccggcg gtcggatcga tgaagcctgc gaggcagttc agcagcgttg tcttgccgca
      781 tccggacgcg ccaagcgcaa ccacgaactc gccactgtcg atctgcagat cgacgccctc
      841 cagagcggct gttgccgcgc cttcataggt cacgccgagg ccgcgaatgt ccagcgtgct
      901 catcgcgatg cttgctgtac gaagcgtggg tcgacgccaa ccgaatagtc gggcaacaag
      961 ttctggatcg tgccttgcgc cttaaggaag gccgcagtgg ctgccagtga cttcgcggca
     1021 cctgactgag caccaccgcc aagccaggcc gatgaagcct ggtcggtgag cgtcgggaag
     1081 gcgtaaagcg cgagactggc gggcacgtcg gcagcggttg cgcccgattc cttcgctacg
     1141 ccttcaactt ccttcgaccc ggccgtccag gcggatttgt tgtctcgata ctgcgcgtcg
     1201 gtagcggcga gcaccttgac caggcccgtc acgaacgcgt cgttatcctg cgcgaacttg
     1261 cggctgacgg cgaagccgtc gaaggtcgcc ttgccggttt cctttgcgac ttcacccgat
     1321 gtgatcagga ccttaccgtt tttcttgacc ttcgccagca ccgggtccca gatataggtg
     1381 gcgtcaatat caccgcgttc ccacgccgca gccacttcag gtggccgcag gttcaggatc
     1441 ttcaccgtcg acggatcgac gcctgcgttt tgcagggcga cgagtgcatg gaagtgcgag
     1501 gtggagacga acggcagacc gatcttcttg cccttgagat cgcttatctt cgttacgccg
     1561 gagccgtctc gggcaacgag cgcctcggcg tcgttgatgt tgtcgaggat ccagaacagg
     1621 gagatgtcca cgccttgcga gaggccggcc gcgatcgggc tggaaccggc ttcacccagt
     1681 tgaattgacc cggatgcgag cgcgcggatc acgtcggcgc cgctgccaag cttgcgataa
     1741 gtcaccttat aacccgttgc attttcgact gcgccgctca cttgagcgta acgccacggt
     1801 acgaccatgt cctggtaacc gatcacgact tcacgcgact gcgcgtgagc ggcgctcgcg
     1861 gccgcggcga aaagtgcaac gccggcgcac gcgcgcaggg aggagaaaaa gcgtttcatc
     1921 ggaagccccg gatcaagtgt gtcttgtgaa agggtttcga ctataagcaa tccgcgcgcg
     1981 agcggttaga agcattcgtg cgttgcaaat gacgtcgctc aagcgttgct ttacacgtag
     2041 cgttggaagc attcgaacac gcgctttatg cggtcctcag ccgtttttcg aatgtgcgcg
     2101 tgagccatga aattggatag cagtaggcga agaagatcac gagcgtcgcg acataggtca
     2161 gcaccgtaaa gctgctgcgg gcgaccgtgc tgctggcaat ctgcgcggtg tcgagcaggt
     2221 catgaatgcc gaccagcgat gacagcgcgg tgcccatggt gatgatcgcg tacacgttca
     2281 tccatggcgg caacatgcgg cgaacgcatt gcggcacgac tattttcagc aggatttgcc
     2341 aacgggaaaa cgcaagcgag gccgccgctt cccactgcgc tgaaggaatg gaagcaaccg
     2401 cgccgcgaaa cacttcggct atgttcgcgc tggctggcag agcaagcccg agcatcacct
     2461 tcagccagtc cggaaacggc acggtggtgc cgaagacgcg gatctcgaag gggaacacgt
     2521 aggtcgtgaa gtagatcagt acgagccatg gcgcgttgcg aaacgcgaca atccacagtc
     2581 ttgccagccg ccccgcgaag gattgggaca gcgctagcgc gcctgtaagc agcccgatca
     2641 aagtgcctat aaaaatcgcg ccgatgctga taagcacgtt catcgcaaag ccgtgcgcca
     2701 gcgccggagc ccattctacg agacgtgcca gcgtctcgcc gcgcgagccg gcttcgggcg
     2761 cgagtgacca caaagcggcg cccacggcaa cgatgccaat cacgccatag atgccgggcg
     2821 gcaagcgcat gccagcgagc ttgccc
//
LOCUS       DATGBK010001665         2248 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_228332, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001665 DATGBK010000000
VERSION     DATGBK010001665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228332"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..1493)
                     /locus_tag="VKJ77_23365"
     CDS             complement(78..1493)
                     /locus_tag="VKJ77_23365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2252 domain-containing protein"
                     /protein_id="HMC48277.1"
                     /translation="MPTQPAASASPPTRLSGTSIGSAEESRVLGRSLRDSIPFDAHAT
                     WQPGNGRPDAVARVLANNAGRQERLIPLRMSRMAASPFAFLRGAASVMAWDLAHTPSI
                     GHHVMIDGDAHLNNFGLFRTPRQDVVFDLNDFDETLVAPWEWDLKRLTASINVAAREN
                     GVDAAGRERAVRSACTAYRTTMSTLAQVPAYELWQMRSYASVLHIEAPVTLNSAEKAT
                     IAKAVERSTKRSHATMLARVAEPDGKSWRFRDEPPILTRLDAAQKNHVIEGLRGYLQT
                     IAGEWRTMLERYDVVDVAHRVVGVGSVGTRAYLLLLLGRAHADPLFMQVKEGIVPAAA
                     PFVPPLAEPFSHQGRRVVHGQRLLQSSSDPLLGWTTISGRDFYVRQMKNIRGSIPVDW
                     LHGATFDFYAWCLGLLLARAHARTGDAALIAGYCGNSDRLDTAYARWAENYGTQTAID
                     HAAFVQAIAQGRVIAAPPEKA"
     gene            1935..>2248
                     /locus_tag="VKJ77_23370"
     CDS             1935..>2248
                     /locus_tag="VKJ77_23370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching enzyme GlgX"
                     /protein_id="HMC48278.1"
                     /translation="MAHDIRIAEGSPFPLGATWDGEGVNFALFSAHATKVELCLFDDL
                     GGKELERIELPEYTDEVFHVYLFGLKPGAVYGYRVHGPYEPENGHRFNPNKLLLDPYA
                     KA"
BASE COUNT          432 a          702 c          702 g          412 t
ORIGIN      
        1 gcgtcccggg ttttttgacg tcatcggccg atcggatggg gtttggtgga tggactcggc
       61 tcgttcgcct cgcactgcta cgctttctcg ggcggcgcag ctatcacccg cccctgagcg
      121 atcgcctgga cgaacgcagc gtggtcaatc gcggtttgtg tgccgtaatt ttcggcccat
      181 cgggcatagg ctgtatccag gcgatccgag ttgccgcaat aaccggcgat cagcgcggca
      241 tcgccggtgc gcgcatgagc gcgcgcgagc agcaagccga ggcaccaggc atagaaatcg
      301 aaggtcgcgc cgtgcagcca atcgaccgga atcgagccgc ggatgttttt catctgccgc
      361 acgtagaaat cgcggcccga aatggtcgtc cagccgagca acgggtcgga ggagctttgc
      421 agcaggcgct ggccgtgcac cacgcgtcgc ccttgatggc tgaacggttc ggcaagcggc
      481 ggcacgaacg gcgcggcagc cggcacaatg ccttccttca cctgcatgaa tagcggatcg
      541 gcatgagccc gtccgagcag caataacaga tacgcgcggg tcccgacact gcccacgccc
      601 accacgcgat gcgcgacatc gaccacgtcg tagcgctcga gcatcgtccg ccattcgcct
      661 gcgatggtct gcaagtaccc gcgcagccct tctataacgt gatttttctg cgctgcgtca
      721 agacgggtga gaatcggcgg ttcgtcgcga aaacgccagc ttttgccgtc cggctcggcg
      781 acacgagcca gcatcgtcgc gtgactgcgc ttggtcgagc gctcaacggc cttggcaatg
      841 gtcgccttct ccgcagagtt gagcgtgacc ggcgcttcga tatgcaacac gctcgcgtac
      901 gagcgcatct gccacagttc ataggcggga acctgcgcca gggtcgacat agtggtccgg
      961 taggcggtgc aagcggagcg cacggcacgc tcgcggccgg cggcgtcgac tccgttttcg
     1021 cgcgctgcca cgttgatgct ggcggtgagc cgtttcagat cccattccca cggggcgacc
     1081 agcgtttcat cgaagtcgtt caggtcgaag accacgtcct gccgaggcgt gcggaacagg
     1141 ccgaaattgt tcagatgcgc atcgccatcg atcatcacgt gatgaccaat agaaggcgtg
     1201 tgcgcgagat cccaggccat cacgctcgcc gcgccgcgca ggaacgcaaa cggcgacgca
     1261 gccatgcgtg acatgcgcag cgggatcagc cgctcttgcc ggccggcgtt attcgcgagc
     1321 acccgcgcca cggcgtccgg gcggccgttt cccggctgcc aggttgcgtg cgcgtcgaag
     1381 gggatcgagt cgcgcagcga ccgcccaagc acacggcttt cctcagcgct gccgatggac
     1441 gtaccggaca gcctggtcgg cggactcgcg gatgcagcgg gttgggtggg caagacagct
     1501 ttcctcgggt tgatcgatag cgtaaggcgt gagcggtttc atgaacgctc cgggccggat
     1561 gtgcaggacg cggaagcacg atgcacgccg gcagcgattt cgtacagtcc caggctccgc
     1621 cagcctaggc ggcaggttct tcatcggcag aaaaggaaag ccgcgacacc aggcccatac
     1681 cgcatccaca gcgcagccgg gagctgtccg aaagggatgc tccgcgatgg gcatgaaacc
     1741 tgctgtttct tctgcccgtg ggctccggat gacgttgcgc tcaggcgcca aggatctgtc
     1801 gtccgatccc ggccaacgat tcaacgacga acgacaaacg actaactatt gacccgcaaa
     1861 tccactagcg gctcggcgga ttgaagcatc atcacatatt cattgaagca tccaacacct
     1921 ggacatccgc atacatggca cacgatatcc gcattgccga aggctcgccg tttcctctgg
     1981 gcgcgacctg ggacggcgag ggcgtcaact tcgccttgtt ctccgcgcac gctacgaaag
     2041 tcgaactgtg cctctttgat gacctcggcg ggaaggaact cgaacgcatc gaattacctg
     2101 aatacaccga tgaagtcttc cacgtctatc tgtttggttt gaaaccgggg gcggtctatg
     2161 ggtatcgcgt gcatggtcct tatgagccgg aaaacgggca tcgcttcaat ccgaacaagc
     2221 tgttgctcga tccgtacgcg aaggcgca
//
LOCUS       DATGBK010001666         2454 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_19353, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001666 DATGBK010000000
VERSION     DATGBK010001666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19353"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..1312
                     /gene="sbcD"
                     /locus_tag="VKJ77_23375"
     CDS             89..1312
                     /gene="sbcD"
                     /locus_tag="VKJ77_23375"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019701519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcD"
                     /protein_id="HMC48279.1"
                     /translation="MRILHTSDWHLGQYFLGHSRQAEHQKLIAWLVEQTRLHAVDSVL
                     IAGDIFDTGAPPSYARELYYTLILALRDAGVGLTLLAGNHDSVAVLEESRHLLTALNT
                     VVIPSVQDDPSEQVRVLTTRDGKPGAIVCAIPFIRPRDVLQSIAGQSARDKQESLQDA
                     IHAHYQALFALAEQKRVALGAHLPIIATGHLTTVGASASESVREIYVGALEAFPTSAF
                     PAADYIALGHIHRPQKVGGLEHIRYSGSPIPLSFDEARQQKEMLLVDVSESGLERVTV
                     LDVPCFQPLLSVKGSLKELEVAVSAAASQAVKGETVWLEIVVSADDYLSDLQSRIQKI
                     TEDLPVEVLRIRRERSSASNTLQRQAKETLNELTPDDVFARRLQSETIDEETRLQLLS
                     MYREVVAEIGEADAA"
     gene            1309..>2454
                     /locus_tag="VKJ77_23380"
     CDS             1309..>2454
                     /locus_tag="VKJ77_23380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011795733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC48280.1"
                     /translation="MKILSLRLRNLNSLKGEWKIDFSQPPFRDNGLFAITGPTGAGKT
                     TLLDAICLALYHRTPRMDTISQGTNELMTRHTFECLAEVEFEVKGEGYRAFWSQRRAR
                     DKTDGNLQAPKVELARLDGTIMTERIVDKLRLVESITGLDFGRFTKSMMLAQGGFAAF
                     LEAKANERAELLEELTGTDIYGTISQNVFERTRNEKLALDTLLVRADGVQLLTEEQRS
                     GLQQEQATVGEQETALGKQLDTTRAMLAWRAALSAADGQLERALTNQRQAELKIADAK
                     PTLDRLAASEPAEKLRADHSAMLAARDRHAETARQLASAKADKQAASLDAARGLRQAS
                     VISGRIAELRQNTLNEILADAKAVQSALDEHPHRSKLGEQIVLWQQQF"
BASE COUNT          515 a          700 c          777 g          462 t
ORIGIN      
        1 agcccgttcc cgcgtttgcg cgaagtcgat cggctaaact ggcagccact aaaacgatgc
       61 gcggcaacgc ctccaccccc cttccccgat gcgaatcctg cacacctcgg actggcacct
      121 tggccagtac tttcttgggc attcccgcca ggccgaacat caaaagctga ttgcgtggct
      181 ggttgagcaa acgcggctgc acgcggtcga ttcggtgctg atagccggcg atatcttcga
      241 taccggcgca ccgcccagct acgctcgcga gctttactac acgctgattc ttgcgttgcg
      301 cgacgcgggc gtcggcttga cgctgctggc gggcaatcac gattccgtcg ccgtgctgga
      361 agagtcgcgc catttgctga cggcgttgaa taccgtcgtc attccctccg tgcaagacga
      421 tcctagcgaa caggttcgtg tgctcaccac gcgtgacggc aagcctggcg cgatcgtctg
      481 cgccatcccg ttcatccgtc cgcgcgacgt gctgcagagt atcgcgggac agagcgcacg
      541 cgataaacag gagtcgctgc aagacgcgat tcacgcgcat tatcaggcac tgttcgcgct
      601 ggccgagcag aaacgcgtgg cgcttggcgc gcatttgccg attatcgcga ccggacattt
      661 gacgacggtc ggcgcgagcg caagtgaatc ggtgcgggag atctatgtcg gcgcgctgga
      721 agcctttccg acgagcgcgt ttccggcggc cgattacatc gcgctcgggc atattcatcg
      781 gccgcagaaa gtgggtggat tggagcatat tcgctacagc ggctcgccga ttccacttag
      841 cttcgatgaa gcgcggcaac aaaaagagat gctgcttgtg gatgtgtcgg agagcggcct
      901 tgaacgcgtg accgtgctcg acgtgccgtg ctttcagccg ttgttgtcgg tgaaaggatc
      961 gttgaaagaa cttgaggttg cggtctccgc ggctgcgtct caggcagtta aaggcgagac
     1021 ggtgtggctc gaaatcgtag tctccgccga tgactacctc agcgatctcc agtcgcgtat
     1081 ccagaagatc actgaagacc tgccggttga agtgctgcgc attcgtcgcg agcgttcttc
     1141 ggcttcgaac acgctgcagc gccaagcaaa ggaaaccttg aacgagctca cgcccgatga
     1201 tgtattcgcg cgccgcctgc aatccgaaac catcgacgag gaaacgcgct tgcagctttt
     1261 atcgatgtat cgcgaggttg tggccgagat tggcgaggcg gatgcagcat gaagatcttg
     1321 tcgttgcgtt tgcggaatct gaactctctg aagggcgagt ggaagatcga tttcagccaa
     1381 ccgccgttcc gtgacaatgg cttgttcgcg atcaccggcc cgaccggcgc gggcaagacc
     1441 acgttgctcg atgcgatctg ccttgcgctc tatcaccgca cgccgcgcat ggacacgatc
     1501 tcgcaaggga cgaacgagct gatgacgcgg cacacgttcg aatgcctcgc ggaagtggag
     1561 ttcgaagtga agggcgaagg gtatcgggcg ttctggagcc agcgtcgcgc acgcgacaaa
     1621 accgacggca atctgcaagc gccgaaggtg gaactcgcgc gtctcgacgg cacgatcatg
     1681 accgagcgaa tcgtggacaa gctgcggctt gtcgaaagca ttacgggact cgatttcggc
     1741 cgcttcacga agtccatgat gctcgcgcaa ggtggcttcg ccgcgttcct cgaagcgaag
     1801 gcgaacgagc gcgccgagtt gctcgaagaa ctcaccggca ccgatatcta cggcacgatc
     1861 tcgcagaacg tgttcgagcg gacgcgcaac gagaagcttg cgctggatac gttgctggta
     1921 cgggcagatg gtgtgcagct gctgactgaa gagcagcgga gcggactgca gcaggaacaa
     1981 gcaaccgttg gcgagcaaga aacggcgctc ggcaagcaac tcgatacaac gcgcgcgatg
     2041 ttggcctggc gagcggcgtt atcggcggcg gacgggcagc ttgagcgggc gctgacgaac
     2101 caacggcaag cggaattgaa gatcgccgat gccaagccga cactcgatcg gttagctgca
     2161 agcgagccgg ctgaaaagct gcgtgcggat cattcggcca tgctggcggc acgcgacagg
     2221 catgcggaga cagcgcgtca actcgcgagt gccaaggcag acaagcaggc tgcatcgctc
     2281 gatgcggcgc gtggtctgcg tcaggcatcg gtgataagtg gaaggattgc ggagcttcgc
     2341 caaaacacac tgaacgagat tctggccgat gctaaagccg ttcagtctgc actcgatgaa
     2401 catccgcatc gaagcaaact tggcgagcag attgtgttgt ggcagcagca attc
//
LOCUS       DATGBK010001667         2117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_135271, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001667 DATGBK010000000
VERSION     DATGBK010001667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135271"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..384
                     /locus_tag="VKJ77_23385"
     CDS             <1..384
                     /locus_tag="VKJ77_23385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013341457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48281.1"
                     /translation="CASVLGVMFFLGSVFLPTNTLRFIALSLGAPCMYLLLPCFWTLP
                     SKFLTGARAAAGIAAINSLGNVGGFIAQNLVPWVRQVSGSTKAPMLIPAACLFTFGVV
                     TLILIRRNRHDGTQEASTRRRVEAT"
     gene            460..1542
                     /locus_tag="VKJ77_23390"
     CDS             460..1542
                     /locus_tag="VKJ77_23390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC48282.1"
                     /translation="MPNDKPTAYPIDAQDKAQDEAPPAPVKRSRGGAKGLRITDVAAV
                     AGVSPITVSRVFNNPESVAPETLERVRQVVQKLGYVPNRLAGGLSSSKSRLIAAIVPT
                     IAHSLFSETIQVFSETMSKAGYQVLLALSGYSDSSEETLLDAVLSRRPEGVLLTGVAH
                     TDSLRERLRNVGIPIVETWDMTETPIDMLVGFSHYQVGVAVAERFLARGVLHPGLVSA
                     NDDRAIARITGFRERLARAGIHDVADVIVAPPSSVSIGKAALPKLLEQMPALDAVFCG
                     SDLLAIGVLGEAKRRGIEVPSQLAICGFGDLEFASETSPQLTTVGVDGTRIGVSAARC
                     LLERLKGVTETNVVDVGFHIVERQTV"
     gene            complement(1569..>2117)
                     /locus_tag="VKJ77_23395"
     CDS             complement(1569..>2117)
                     /locus_tag="VKJ77_23395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011326264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HMC48283.1"
                     /translation="EVRSGRRAFVRLDVLHRENLLAVLADYGIDLTSVPAEDVDELNL
                     AWHRLDPWPDSLSGLTRLKATRIIAPLSNGNIVLMLDMAKRAGIPWDAILGAEVVQAY
                     KPMPEAYLRTADVLGLRPEQMCLVAAHNNDLAAARECGYKTAFVARPTEHGPAQTTDL
                     KAEADWDVVARDFNDLADKVGA"
BASE COUNT          357 a          632 c          675 g          453 t
ORIGIN      
        1 tgtgcgtcgg tactcggcgt gatgttcttt ctcggcagcg tgttcctgcc gaccaataca
       61 ttgcgtttca ttgcgttgag tcttggcgcg ccctgcatgt atttgctcct gccgtgcttc
      121 tggacgctgc cgtcgaagtt cctgaccggc gcacgtgcgg ccgccggaat cgcggcgatc
      181 aattcgctcg gtaatgtggg tggttttatc gcgcagaacc tggtgccatg ggtccggcag
      241 gtgagcggca gcacgaaggc gcccatgctg attcctgcgg cgtgtctctt tacgtttggt
      301 gtcgtcacgc tgattttgat tcgccgcaat cgccatgacg gtacgcagga ggcgagcact
      361 cggcggaggg tggaagcgac gtaggaccgt tcctgcgacg aggccccggt cagtgtgact
      421 acaataccgg cgtcaagccc tcctgcaacc acgcgaacca tgccgaacga caagccgact
      481 gcgtatccca tcgacgccca ggacaaagcc caggacgaag ctccgcccgc gcccgtcaag
      541 cgctcgcgcg gcggtgcgaa agggctgcgc atcaccgacg ttgcggccgt cgcgggcgtc
      601 tctcccatca ccgtgtcgcg cgtcttcaac aatccggaat cggtcgcgcc ggaaacgctc
      661 gagcgcgtgc gtcaggtcgt ccagaagctc ggttatgtgc ccaaccggct ggcgggcggg
      721 ctgtcctcat cgaagtcgcg gctgatcgcg gcgattgtgc cgaccatcgc gcactcgttg
      781 ttctccgaga ctattcaggt gttcagcgag accatgtcga aggccggtta tcaggtactg
      841 cttgcgttga gcggctacag cgattccagt gaggaaacgc tgcttgatgc ggtcttgagc
      901 cggcgccctg aaggggtgtt gttgacgggc gtggcgcaca cggattcgtt gcgcgaaagg
      961 ctgcgcaatg tcggcattcc gattgtggaa acgtgggaca tgacggagac gccgatcgat
     1021 atgctcgtgg gcttctcgca ttaccaagtg ggcgttgcgg ttgcggagcg gttcctcgcg
     1081 cgaggcgttt tgcatccggg cctggtgtcg gccaacgatg atcgcgcgat tgcacgtatc
     1141 accggctttc gcgagcggct ggcgcgcgca gggattcatg atgtcgcgga cgtgatagtt
     1201 gcgccgccca gttcggtatc gattgggaag gccgcgttgc ctaagcttct tgaacagatg
     1261 cccgcgctcg atgccgtttt ctgcggctcg gatctgcttg ctatcggcgt gcttggcgag
     1321 gccaagcgca ggggtatcga agtaccgtcg caactggcca tctgcggttt cggcgatctg
     1381 gagttcgctt cggaaacgag tccgcagttg acgaccgtgg gcgtggacgg cacgcgtatt
     1441 ggcgtgagcg cagcgcgctg tttgttagag cgcttgaaag gcgtgacgga aacgaacgtg
     1501 gttgatgtcg ggtttcatat tgtcgagcgg cagacggttt gagttgggtt tagtcaccct
     1561 atgccgccct aggcccccac cttatccgcc aggtcattga agtcacgcgc gaccacgtcc
     1621 cagtccgctt cggccttcaa atccgtggtc tgcgccggcc catgttccgt cgggcgcgca
     1681 acaaacgccg tcttgtatcc gcattccctc gctgccgcga gatcgttgtt gtgcgcggcg
     1741 accaggcaca tttgctccgg ccgaagacct aatacatcgg cagttcgcaa atacgcttca
     1801 ggcatcggct tgtaggcctg cacgacttcc gcgcccagaa tcgcatccca cggaatgccg
     1861 gcgcgtttcg ccatgtccag catcaggacg atgttgccat tcgaaagcgg cgcaatgatg
     1921 cgagtggcct tgagtcgtgt gaggccgctc agcgaatcgg gccacggatc cagccgatgc
     1981 catgccaggt tcagctcatc gacatcctcg gctgggacgc tggtgaggtc gattccatag
     2041 tccgccaaca ccgccagcaa gttctcgcgg tgcaacacgt ctagccggac aaatgctctc
     2101 cggccgctgc gcacttc
//
LOCUS       DATGBK010001668         2719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_19384, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001668 DATGBK010000000
VERSION     DATGBK010001668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19384"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..540)
                     /locus_tag="VKJ77_23400"
     CDS             complement(<1..540)
                     /locus_tag="VKJ77_23400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48284.1"
                     /translation="MHAAHLKLIEKRAHLHDAKVKAGTIADQLDQTNHNIAQVHGRIS
                     VISAQMHTTQRKLDWTRVQLAAAQKTVARHNDALKRRLVEAYEHGDLGYIDVLLESRS
                     FTDFVERWNDIRYVIKANQATIRQRKALEANVHGIELSLVGTQAVLGSQQSQASQEQN
                     ALGALADERKSLLQAAAQEK"
     gene            complement(668..1474)
                     /gene="ftsX"
                     /locus_tag="VKJ77_23405"
     CDS             complement(668..1474)
                     /gene="ftsX"
                     /locus_tag="VKJ77_23405"
                     /inference="COORDINATES: protein motif:HMM:NF038347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease-like cell division protein FtsX"
                     /protein_id="HMC48285.1"
                     /translation="MQFTAIGTVAVTIVMLGSFLYVRETIASFGTGVLSRIEVAVYLN
                     DNVDDKKAQEIGSKFAADKRILGATYIPKREGLRRMKDVLGRDFDTSLLTSNPFPNAY
                     HVRVRTPDDVAGVAASIAKIPGVAKTDYAAETVQKLLRVADVVGRVGLVMIALLVFTA
                     AIIISNTIRLTVFARRREISIMQLVGATNMYIRMPFIAEGMLAGILGAGIALGVLFIA
                     RVELIPKLAATLSFVPFSVNEPMLALQCLAVGAAVGFVAAWLSVGRYLRA"
     gene            complement(1506..2216)
                     /gene="ftsE"
                     /locus_tag="VKJ77_23410"
     CDS             complement(1506..2216)
                     /gene="ftsE"
                     /locus_tag="VKJ77_23410"
                     /inference="COORDINATES: protein motif:HMM:TIGR02673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HMC48286.1"
                     /translation="MISLRGVTLTYPNGVRALDDVDLEVAKGSFVFLVGHSGTGKSSL
                     LKLLYREMLPTAGEVYVDDIRVDRLRRSRVAKLRRNIGVVFQDFKLLSHKTVWENVAF
                     ALQVTGASSRDVMRQVPRSLDLVGLSHKSRMFPTELSGGEQQRAAIARALVNNPKILL
                     CDEPTGNLDPSNTTEIMELLQRINLKGTTVLVATHNQAVVDRMRRRVVRLEDGRILHD
                     DERGYYFRGLGQSTVLSG"
     gene            2277..>2719
                     /locus_tag="VKJ77_23415"
     CDS             2277..>2719
                     /locus_tag="VKJ77_23415"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC48287.1"
                     /translation="MNFDLSDDQKAIQSLCRDFAREEVAPKAEELDRNAEFPYAIVKK
                     LAGLGLLGLPFPEKYGGAGADTVSYALAVMELARADASVAITMAAHVSLGASPFYLFG
                     TEAQKEKYLVPLAQGQMLWGFGLTEPGAGSDAAGLSTRAELSNGR"
BASE COUNT          549 a          796 c          814 g          560 t
ORIGIN      
        1 cttttcttgc gccgccgcct gcagcagtga tttgcgttcg tccgcgagcg cgccgagcgc
       61 gttctgctct tggctggctt ggctctgttg gctgccgagt acggcttgcg tgccgacgag
      121 cgacagctcg atgccgtgta cgtttgcttc gagcgccttg cgctgacgaa tcgtcgcctg
      181 gttggcttta atgacgtaac ggatatcgtt ccaacgttcg acaaaatcgg tgaacgatcg
      241 cgactctagt agcacgtcga tgtaacccaa gtcgccgtgc tcgtacgctt cgaccaaccg
      301 gcgcttaagc gcatcgttat ggcgcgcgac cgtcttttgc gcggcggcaa gctgcacgcg
      361 tgtccaatcg agcttgcgct gcgtcgtgtg catttgcgcg gagatgacgc tgatgcgccc
      421 gtgaacctgc gcgatgttgt gattggtttg atcgagctga tcggcgatcg tgccggcctt
      481 cactttggcg tcgtgaaggt gcgcgcgctt ttcaatgagc tttaaatgcg cggcgtgcaa
      541 cttggcttgc tgcgcgcgaa ttttgtcatc gatacgcgtc ttggcttgaa cggcgccgag
      601 tggaaggagt gcgagtaaga gcgcggacgc gataacgcgg cgcagcacgt gcggcgcgtt
      661 atcgcgatca ggcacgcaga tagcgtccga ctgaaagcca agcggcgacg aagccgacgg
      721 cggcgccaac ggcaaggcac tgcagcgcga gcatcggttc gttgaccgaa aacgggacga
      781 aggacagcgt agcggccagc ttcggtatca gctctacgcg cgcgataaac aaaacgccga
      841 gcgcaatgcc cgcgccaaga attcccgcga gcatcccttc ggcgataaac ggcatgcgaa
      901 tgtacatgtt cgtcgcgccg acgagctgca tgatcgaaat ttcacgacga cgcgcgaaca
      961 ccgtcaaacg gatcgtattc gagatgatga tggccgcggt aaacacgagc agcgcgatca
     1021 tcacgaggcc gacgcgtcca actacatcgg caacccgcag cagcttttgc acggtttccg
     1081 ccgcataatc cgtctttgca acgcccggaa tttttgcaat cgatgccgca acaccggcga
     1141 cgtcgtcggg cgtgcgcacg cgtacgtgat acgcattcgg aaacggattc gatgtcaaga
     1201 gcgacgtgtc gaaatcgcgt ccgagcacat ctttcatgcg ccgcagccct tcgcgtttcg
     1261 gaatatacgt cgcgcccaga attcgtttat cggccgcaaa cttcgagccg atttcttgcg
     1321 cctttttgtc atcgacgttg tcgttcagat agacggcaac ctcaatgcgc gacagcacgc
     1381 ccgtgccgaa cgatgcgatg gtttcgcgca cgtataaaaa cgagccgagc atgacgatcg
     1441 taacggcaac cgtcccgatc gcggtaaatt gcatggcggc gttccgagtg aagttggcgg
     1501 caacctcacc cagaaagaac tgtactttgc cccagtccac ggaaataata tcctcgctcg
     1561 tcgtcgtgca agatgcgtcc gtcttcgagg cgaacgacgc gccggcgcat gcggtcgacg
     1621 acggcttggt tatgcgtcgc gacgagtacg gtcgtgcctt taaggttgat gcgctgcagc
     1681 agctccatga tctcggtcgt gttcgacgga tccaggttgc ccgttggttc gtcgcacaag
     1741 agaatcttgg gattgttgac cagcgcccgg gcgatcgcgg cacgttgctg ctcgccgccc
     1801 gatagctcgg tcggaaacat gcggctcttg tgcgagagcc cgacgagatc gagcgagcgc
     1861 ggcacctgac gcatcacatc gcgcgagctt gcgcccgtga cctggagcgc gaacgcgaca
     1921 ttctcccaca ccgtcttgtg cgagagcaac ttgaaatctt gaaacacgac cccgatgttg
     1981 cggcgcaatt tggcgacgcg cgagcggcgc aagcggtcga cgcgaatatc gtcgacgtag
     2041 acttcgccgg cagttgggag catttcgcga tagagtaact tcagaaggct ggatttgccc
     2101 gttcccgagt gcccaacgag aaagacaaaa gaacccttcg caacttccaa atcgacgtca
     2161 tcaagtgccc gtacgccgtt gggataagtc agagttacgc cgcgaaggct gatcacgtgg
     2221 tcgtgcctcg cattagaggg ttttttccga acatccctca gtcttacctc cgcagcatga
     2281 acttcgattt aagtgacgat caaaaggcga ttcaatcgct ttgccgcgat ttcgcccgcg
     2341 aggaagtcgc cccaaaggcc gaagagctcg accgcaatgc tgagtttccg tacgctatcg
     2401 taaagaagct cgccggcctg ggattactcg gtttgccgtt tcccgaaaag tacgggggcg
     2461 caggcgccga cacggtcagc tatgcgcttg ccgtgatgga acttgcacgc gccgatgcat
     2521 cggtcgcgat cacgatggcg gcgcacgttt cccttggcgc gtcgcccttc tatttgttcg
     2581 gcaccgaagc gcaaaaagag aagtacctcg tccccttagc tcaagggcag atgctgtggg
     2641 gcttcggcct aacggagccg ggtgccggat ccgatgccgc cggcttatcg acgcgcgccg
     2701 agttatcgaa cggccgctg
//
LOCUS       DATGBK010001669         2881 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_19394, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001669 DATGBK010000000
VERSION     DATGBK010001669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19394"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..934)
                     /locus_tag="VKJ77_23420"
     CDS             complement(<1..934)
                     /locus_tag="VKJ77_23420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48288.1"
                     /translation="MDRLGDMRLFTEAAALGSLSAAGRKLGLSPAAASARLLKLEKSL
                     TARLFERTTRQLRLTDEGRLYLQHCQIALQAIDDGEAALHAGQNLVRGKVRISATSDF
                     GRNLLCHWLDEFSRLYPDVSFSLTLSDSVSNLLLEDIDLAIRFNRPPDGNLVARRLAP
                     NRRVLCASPEYLARHGEPKTPADLATHTFTVLVTSTATFNQFDFVRGDERFTHTVPLD
                     DAWETNDGALSRAWALAGQGIAHKSIWDIAADVRSGALKILLADWCSNEAAVHAVFHG
                     NRYMAPRVRVLLDFLIERFARATAELLGDLAYPPG"
     gene            1083..1478
                     /locus_tag="VKJ77_23425"
     CDS             1083..1478
                     /locus_tag="VKJ77_23425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC48289.1"
                     /translation="MKLDHVTIVAPDCEPIRHFLVDIAGMKVGPRPPFGIGGYWLYLD
                     GEAAVHLIENGSVLASPPGGRAATRIDHLALRVQGAAEWQALLARLHEHAIPFSEADV
                     PLSREQQVFVQLAPGVVIEFVTSLSSPSN"
     gene            1489..2667
                     /locus_tag="VKJ77_23430"
     CDS             1489..2667
                     /locus_tag="VKJ77_23430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48290.1"
                     /translation="MPIPLLALAISAFAIGTTEFVIMGLLPDVARDLAVSIPSAGLLV
                     TGYALGVAVGAPLLAVLTARMPRKLALQLLMGVFIVGNVLCAVAPGYSMLMVARVVTS
                     FAHGSFFGIGAVVAASLVPAEKRASAIALMFTGLTLANVLGVPFGTFIGQEFGWRATF
                     WVVAALGVLSLIGVAALVPNKHDSGPSNFGRELRVLKEPQVWLALAMTVLGFGGVFVV
                     FTYIAPILEQVSGFSPHGVTLVLVLFGVGLTIGNTIGGKLADRALMPSLMGILVALAI
                     IMAVFAKTSHSQTLAAITIFIWGIAAFATVPPLQTRVVEKAKHAPNLASTLNIGAFNL
                     GNAGGAWLGGVVLSQGHPLDSLPWVAAVVAVVALGVTWYAARLDRGGQGASSGAVDAV
                     "
BASE COUNT          475 a          871 c          949 g          586 t
ORIGIN      
        1 ggccgggcgg gtaggccaag tcgccgagca attccgccgt cgcgcgggcg aagcgttcga
       61 tcaggaaatc cagcagcacg cgcacccgcg gcgccatgta ccggttgccg tggaagaccg
      121 cgtgaaccgc tgcttcgttc gaacaccagt ctgccagcaa aattttcagc gcgccggagc
      181 ggacatcggc ggcgatatcc cagatcgatt tatgcgcaat gccctggcca gccagcgccc
      241 acgcgcggga cagcgcgccg tcgttggttt cccaggcgtc gtcgagcggc acggtgtggg
      301 tgaaacgctc atcgccacgg acgaaatcaa actgattgaa cgtagccgtg gatgtcacca
      361 gcaccgtgaa tgtgtgcgtg gcgagatcgg cgggcgtttt cggttcgccg tgccgcgcca
      421 ggtattccgg cgatgcgcac agcacacgcc ggttcggcgc cagccgccgc gcgaccagat
      481 tgccgtcggg cggacggttg aagcggatcg ccagatcaat atcttccagc agcagattcg
      541 acaccgaatc cgacagcgtc agcgaaaagc tcacgtccgg atacaggcgg ctgaattcat
      601 cgagccaatg gcacagcaga ttgcggccga aatccgatgt ggccgagatc cgcaccttgc
      661 cgcgcacgag attctggccg gcgtgcagcg cggcttcgcc gtcgtcgata gcctgcagcg
      721 cgatctggca atgctgcaga tatagccggc cttcgtcggt gagcctgagt tgacgggtgg
      781 tgcgctcgaa cagccgtgcg gtgagggatt tttccagctt gagcagacgg gcgctggcag
      841 ccgctggcga taaacccagc ttgcgccccg ccgcggacaa gctgccgagc gctgccgctt
      901 cggtgaacag gcgcatatcg ccgagtcgat ccatcgtgat tctcaacttc cttttgataa
      961 tgcttcaaat gctacgccaa ttatcaaaac gtcactcggc gcgcagaatt tggtgcattg
     1021 cagcgtatga agccgatcat gcagcccgaa ttttccagac gtgccctgac gcgtattccc
     1081 cgatgaaact cgatcacgtc acgatcgtcg cgcccgattg cgagccgatc cgccattttc
     1141 tcgtcgatat agccggcatg aaagtcggcc cgcgcccgcc gttcgggatc ggcggctact
     1201 ggctttatct cgatggcgag gccgccgtgc atctgatcga gaacggctcg gtgctggctt
     1261 cgccacccgg tggccgggca gccacacgca tcgatcatct cgcgctgcgg gtgcaaggcg
     1321 cggccgaatg gcaggcgttg ctcgcgcgtt tgcatgagca cgcaatcccg ttttccgaag
     1381 ccgatgttcc gctctcccgt gagcagcaag tgtttgttca gcttgcgccg ggcgtggtca
     1441 tcgaattcgt gacgtcgctt tcctcaccat caaactaagg ggatttccat gcctattcca
     1501 cttctggcgc tcgcgatcag cgcgtttgcc atagggacaa ccgagttcgt gatcatgggg
     1561 ctgctgcctg atgtggcccg cgatctggct gtatcgattc catcggcggg tcttctcgtc
     1621 accggctacg cgctgggtgt ggccgtgggc gcgccgctgc tcgcggtgct gaccgccagg
     1681 atgccgcgca aactcgcgct gcaattgctg atgggcgtgt ttatcgtcgg caatgtgctg
     1741 tgcgccgtgg cacccggcta ttcgatgctc atggtggccc gcgtggtgac atcgttcgcg
     1801 cacggctcgt ttttcggcat tggcgcagtg gtcgcggcgt cactggttcc ggctgaaaag
     1861 cgcgccagcg cgattgcgct gatgttcacc gggctcacgc tcgcgaacgt gctcggcgtg
     1921 ccgttcggga cgtttatcgg gcaggaattc ggctggcgcg caacgttctg ggtcgtggcg
     1981 gcgctcggcg tgttgtcgct gatcggcgtg gccgcgctcg tgccgaacaa gcacgattcg
     2041 gggccgtcga attttggccg cgaactgcgc gtgctgaagg agccgcaagt ctggctcgcc
     2101 ctggcaatga cggtgctcgg cttcggcggc gtattcgtcg tcttcaccta tatcgcgccg
     2161 atcctcgaac aggtcagcgg attttcgcca cacggcgtca cgttagtgct cgtgctgttc
     2221 ggcgttggat tgacgatcgg caacacgatc ggcggcaagc tggccgaccg ggcgctgatg
     2281 ccctcgctga tgggcattct cgtcgcgctc gccatcatca tggcggtgtt cgcgaagacc
     2341 agccatagcc agacgctggc ggccatcacg atctttatct ggggtatcgc cgcgttcgcg
     2401 acagtaccgc cgctgcagac acgcgtggtc gagaaggcga aacacgcgcc gaatctggca
     2461 tcgacgctga atatcggtgc gtttaatttg ggcaatgccg gtggtgcgtg gctcggcggg
     2521 gtggtgctga gccaagggca tccgctggat tcgctgccgt gggtcgcggc cgtggtggct
     2581 gtagtcgcgc ttggggtgac gtggtacgcg gcccgactcg atcgaggcgg gcagggagcg
     2641 agttcggggg cggtggatgc ggtttgagtt cgtggggcgt gcgggatcgg gggaatgcgc
     2701 aggccgatca agcgtgcggc atggggaggt ccacatgtcg atccagcgtg ccgcacactg
     2761 aggcctgcac gccggtctat ccaacctatt cgccagatgt tgacccggcg tcctcaaccg
     2821 actagcgtgt cgtgcgagcc gcattcgcgg cttatcgctt catcacgctt ttcgaccgag
     2881 g
//
LOCUS       DATGBK010001670         1777 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_66495, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001670 DATGBK010000000
VERSION     DATGBK010001670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66495"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..208)
                     /locus_tag="VKJ77_23435"
     CDS             complement(<1..208)
                     /locus_tag="VKJ77_23435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HMC48291.1"
                     /translation="MTNATLTISSKNYSSWSLRGWLLTKFSGLPFDEYVMPMDDPGAR
                     AELLLLSPSILVPCLVHDGIKVWDT"
     gene            429..1763
                     /gene="phaZ"
                     /locus_tag="VKJ77_23440"
     CDS             429..1763
                     /gene="phaZ"
                     /locus_tag="VKJ77_23440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008923679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate depolymerase"
                     /protein_id="HMC48292.1"
                     /translation="MNPFAYSGYQAMADLSLPIRHGAALVNHALDAWPFLAETPQGRS
                     LRATCDLLALSALTHSRRPFAIDSVEMDGKSVPVVEEITLATPFCSLLHFAKESGPKQ
                     PRVLVIAPMSGHFATLLRGTVRTLLPDHDVYITDWINPRDVSLAQGRFGFDEYVQHVI
                     DFIVALGPNTHVLAVCQPTVATLAAVSLMAADDHPLQPASMTLMAGPIDTRINPTSVN
                     VLAKSKPIEWFERNLISAVPWGFAGAGRRVYPGHTQLMAFMSMNPTRHFDAFEDMVYQ
                     RAKGDPAKAEAIRVFYEEYFATMDLTAEFYLETVDTIFQQHALPLHELEVRGRRVDPS
                     LIRRTALLTVEGERDDICAVGQTLAAQELCNKLRPYMKTHHVQTGVGHYGVFNGKRWE
                     RHIYPRVRAMIHDNEPSSIVINARAQPLQSLAPLARPVAPRMDLNVQSEGPG"
BASE COUNT          368 a          555 c          507 g          347 t
ORIGIN      
        1 gcgtgtccca taccttgatg ccgtcgtgga ccaggcacgg aacgagaatg gacggcgaca
       61 gcagcaacag ttcggcacgt gcgccgggat cgtccatggg catcacgtac tcgtcgaacg
      121 gcagcccgct gaacttcgtg agcaaccagc ctcgcagcga ccatgacgaa tagttcttgc
      181 tgctgatagt gagcgtggcg ttcgtcatat gaaactcctc ggcggttcaa gcaagacacg
      241 tacgcccaag agcgcggcgc agtgcaaaca cgcaccaaaa gacggcacgt tcagtgcgtg
      301 ttcaggaatg ctgcaaggga tgtgccactt tcaaccgccc tcatgctgac gctacacgtt
      361 cgcattcggt tggcatacgt attgcgttgt tttgcgcgac tctacaatac gcgctcaagc
      421 gaaaggcgat gaacccattc gcatactccg gctatcaggc gatggcagat ctctcgctgc
      481 cgatacgcca cggcgcggca ctcgtcaatc acgcgctaga cgcctggccg tttctcgcgg
      541 agacgcctca aggccggtca ctgcgcgcca catgcgatct gctggcgctg tcagcactca
      601 cgcatagccg gcgtccattc gctatcgact cggtggagat ggacgggaaa agcgtgcccg
      661 tggtcgagga gattacgctc gccacaccgt tttgttcgtt gctgcatttt gcgaaggaaa
      721 gcggccccaa acagccgcgt gtgctggtga tcgcgccgat gtccggccac ttcgccacgc
      781 tcctgcgcgg cacagtgcgc acgctgctgc ccgaccacga cgtctacatc accgactgga
      841 tcaaccctcg cgacgtctcg ctggcgcagg gccgctttgg ttttgatgaa tacgtccagc
      901 acgttatcga ctttatcgtc gcgctaggac ccaataccca cgtgctggcg gtctgccagc
      961 cgaccgttgc caccctcgcg gcggtgtccc tgatggccgc agacgatcat ccgttgcaac
     1021 cggccagcat gacgctgatg gctgggccta tcgacacgcg tatcaacccg acttcagtaa
     1081 atgtgctcgc gaaaagcaag ccgatcgaat ggttcgagcg gaacctgatc agcgccgtac
     1141 catgggggtt tgcaggcgcg ggccggcgtg tttacccggg ccacacgcaa ctgatggcat
     1201 tcatgtccat gaatcccaca cgtcatttcg atgcgtttga agacatggtg tatcagcgcg
     1261 ccaagggcga ccctgcgaaa gccgaggcca tccgcgtatt ctatgaagaa tacttcgcga
     1321 ccatggattt aacggccgag ttttatctcg agaccgtcga taccatcttt caacagcacg
     1381 cgttgccgct gcatgaactc gaagtacgcg gacgcagggt tgatccgtca ttgatccggc
     1441 gaaccgcgct gctcaccgtt gaaggcgagc gcgacgatat ctgcgcggtc ggccagacgc
     1501 ttgccgcgca agagctgtgc aacaaattgc gcccgtacat gaagacccac cacgtgcaaa
     1561 cgggtgtcgg tcactatggc gtgttcaacg gcaaacgctg ggagcggcat atctatcccc
     1621 gcgtgcgcgc gatgatccac gacaacgaac ccagctccat cgtcatcaat gcacgcgccc
     1681 agcctttgca atcattggcg ccgctcgcac gccctgtcgc accgcgcatg gatctgaatg
     1741 tgcagtccga agggcctgga taagacctac gcgggtt
//
LOCUS       DATGBK010001671         1852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_205109, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001671 DATGBK010000000
VERSION     DATGBK010001671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205109"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VKJ77_23445"
     CDS             complement(<1..705)
                     /locus_tag="VKJ77_23445"
                     /inference="COORDINATES: protein motif:HMM:NF014601.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase N-terminal
                     domain-containing protein"
                     /protein_id="HMC48293.1"
                     /translation="MKVYIVGAGAVGTYLGEQLRAIGNEVTYAPRDIDAVQPVDADVA
                     IVAVKAYDTDAAIESLRRALKSPGETVIVTPQNGVGNEEKLAAAFGPDAIMSCALTVP
                     VGVDKDGKGVAASGGGIAFAPVGVASHNWLLAAFGATGLSVTAATDFRSLKWSKLALN
                     VVANASCAILNVLPERLVHMDDVFTLEIRAIREVRAVMKALNIPAMDLPRYPLRALQA
                     AASLPSPIARLVLANRI"
     gene            complement(708..1160)
                     /gene="dut"
                     /locus_tag="VKJ77_23450"
     CDS             complement(708..1160)
                     /gene="dut"
                     /locus_tag="VKJ77_23450"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF001862.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HMC48294.1"
                     /translation="MNTSPRIAVVRLPDGEGLPLPVYMSSGAAGADIVAAVQRDVILS
                     PGARALIPTGFSIEVPAGFEVQVRPRSGLAHKFGVTVLNTPGTIDSDYRGPVGVILAN
                     FGAEPFTIRRGDRIAQLIVAPVVQAAFDEVEMLATSDRGSGGFGSTGS"
     gene            complement(1157..1603)
                     /gene="nrdR"
                     /locus_tag="VKJ77_23455"
     CDS             complement(1157..1603)
                     /gene="nrdR"
                     /locus_tag="VKJ77_23455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005671257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HMC48295.1"
                     /translation="MICQNCRKSETRVVDSRDDESVVRRRRECLTCKHRFTTYERIEA
                     PRLFIVKKDGRREQYNRDKILNGLRRACEKRPVAEAQMDEMVATIERELFARGENEVP
                     GTLVGEKLMEALKRVDPVAYIRFASVYRSFRDVESFQAELAELLSK"
BASE COUNT          357 a          613 c          528 g          354 t
ORIGIN      
        1 gatgcgattc gctaacacca agcgcgcgat cggcgacggt aatgatgcgg cggcttgcaa
       61 cgcccgcagc gggtaacgcg gcaaatccat cgcgggaata ttaagcgcct tcatcaccgc
      121 gcgtacttcg cgaatcgcac ggatctctag cgtgaacaca tcgtccatgt gaacgagccg
      181 ttcgggcaat acgttcagga tcgcgcacga cgcattcgcc accacgttga gcgcaagctt
      241 cgaccacttg agcgaacgga aatccgtcgc cgcggtcacg ctcagtccgg tagcaccgaa
      301 cgcggccaac agccagttgt gactggcgac cccgaccggc gcaaatgcga ttccgccgcc
      361 actcgccgca acgccctttc catctttatc cacgccgacg ggcacggtca aagcacacga
      421 cataatcgca tccggaccga aggccgcagc gagcttttct tcgttgccca caccgttttg
      481 cggcgttacg atcacggttt ctccgggaga ttttaaggcc cgccgcagcg actcgatcgc
      541 ggcatcggta tcgtacgctt tcacggcgac aatcgcaaca tcggcgtcga ccggttgcac
      601 cgcatcgatg tcgcgcggcg catacgtgac ctcattaccg atagcgcgca attgttcgcc
      661 gagatacgtt cccacggcgc ccgcgccgac gatgtagact ttcaacgtta ggagcctgtc
      721 gaaccgaagc cgccgctgcc gcggtcgctc gtcgcgagca tttcgacttc atcaaacgcc
      781 gcttgcacca ccggcgctac gatcagttgc gcgatgcgat cgccgcgccg aatcgtgaac
      841 ggttcggcgc cgaagtttgc gaggatgacg ccaaccggcc cgcggtaatc gctatcgatc
      901 gtgcccggcg tgtttaagac cgtcacgccg aatttgtgcg cgagtccgct gcgcggacga
      961 acctgcacct caaagcccgc cgggacttca attgaaaagc ccgttggaat aagcgcgcgc
     1021 gcaccgggtg acagaatcac gtcacgctgc acggctgcca cgatatcggc gcccgcggcg
     1081 ccgctgctca tgtagacggg cagcggcaac ccctcgccgt ccggcaagcg aacgacggca
     1141 atgcgcggcg atgtgttcac ttcgaaagca gttcggcgag ttcggcttga aagctctcga
     1201 catcgcggaa cgaccggtac acgcttgcaa agcggatgta ggccacggga tcgacccgtt
     1261 tgagcgcttc catcagcttc tcgccgacca acgtgccggg cacttcgttt tcgccccgcg
     1321 cgaacagctc gcgttcgatg gtcgcgacca tctcatccat ctgcgcctcg gcgacgggcc
     1381 gcttttcgca cgcgcgccgc aggccgttta ggattttgtc acggttgtac tgctcgcgcc
     1441 ggccgtcttt cttcacgatg aacaagcgcg gtgcttcaat gcgctcgtat gtcgtgaagc
     1501 gatgcttgca cgtcaagcac tcgcgccggc gccggacaac gctctcgtcg tcacggctat
     1561 cgacaacgcg cgtttcactc ttgcggcaat tctgacagat caaggccggc gcgctcccgg
     1621 cggcgcaatc cgcacgttgg ccccaatatc tagtggcaca tcaccagtat aagccactag
     1681 cgtgctgcgc gaaagcccgc gcaaaacaaa aagcccgccc acgttggggc gagcttttca
     1741 catttttggc aggcgttacg tcttacgacg cggcgccgat cttgaacatc ttggtgccgc
     1801 attccgggca cttgccttcg gtcgcggggc gaccgttctt catggtaatt tg
//
LOCUS       DATGBK010001672         2312 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_250941, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001672 DATGBK010000000
VERSION     DATGBK010001672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2312
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250941"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="VKJ77_23460"
     CDS             complement(<1..866)
                     /locus_tag="VKJ77_23460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011880871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC48296.1"
                     /translation="MKLNDILGALGVDLGQWKGDALTARSPLDGATLAGLAVDTPADA
                     ARKIDAAHAAFLKWRTVPAPQRGELVRVFGNVLREHKAALGSLVTLEAGKVTSEGLGE
                     VQEMIDICDFAVGLSRQLYGLTIASERPGHRMMETWHPLGVVGVISAFNFPVAVWSWN
                     AALAFVCGDAVVWKPSEKTPLTAIACHALFEKALREFDKTHPGVAPEGLSQLLLGARD
                     VGQVLTESPKVPLVSATGSVRMGIEVAQVLAKRLGRSILELGGNNAMIVAPSADLDLV
                     VRGVTFSAVGTAG"
     gene            complement(1154..2311)
                     /locus_tag="VKJ77_23465"
     CDS             complement(1154..2311)
                     /locus_tag="VKJ77_23465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009899741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HMC48297.1"
                     /translation="MRELFKYLSRPGMISFAGGYPSKDLFDRAGIGQAMEDAYSSDPI
                     ACLQYGDTAGSPALRRAILRLMTDRGVTRDVDDVIVTTGSQQGLDLLIKILVAPGDAV
                     LIEEPAYPAAIQALRLAGARLIPVRTDAQGIDVDALAEQLEALDPATRPKLLYTVPTF
                     ANPTGATLPAARREALARLAMRFRFVLVEDDPYGELRFSGEPVKPITALADAIPGASD
                     WVVYFGSLSKIVAPGLRIGWSIAPPAITRRMLVAKQTSDLCTSPLAQETARHYLERGR
                     LAEHVQTIALAYRKRCEALSSALRQFVPDEIEYVMPEGGMFVWARLTGGRRSADLLKR
                     AIEQNVIYVPGPAFYARDPDESSMRLSFAAAPGEAEVFEGVRRLKLALASR"
BASE COUNT          443 a          781 c          700 g          388 t
ORIGIN      
        1 cccgccgtgc ccactgccga gaaggtcacg ccgcgcacca ccagatcgag gtcggcgctg
       61 ggcgccacga tcattgcgtt gttgccaccc agttcgagga tgctgcgacc cagccgcttc
      121 gccagcactt gcgccacttc aatccccatg cgcacgctgc cggtcgcgct aaccagcggc
      181 accttcggcg attcggtcag cacctggccg acatcgcgcg cgccgagcag caactggctc
      241 aggccttcgg gcgcgacgcc cggatgggtt ttatcgaatt cacgcagagc cttttcgaac
      301 agcgcgtgac aggcgatagc cgtcaacggc gttttctccg atggcttcca gaccactgcg
      361 tcaccgcaga caaacgccag cgctgcattc cacgaccaca ccgcgaccgg aaagttgaac
      421 gcggagatca cgccgaccac acccagcgga tgccacgttt ccatcatccg gtgacccggt
      481 cgctccgagg caatcgtcag gccgtagagc tggcgcgaca gcccaacggc gaagtcgcag
      541 atgtcgatca tttcctggac ttcgcccagg ccttcggacg tgaccttgcc ggcttccagc
      601 gtgacgaggc taccgagcgc cgctttgtgt tcgcgcagca cattaccgaa aacgcgcacg
      661 agttcgccgc gttgcggcgc gggcacggtg cgccatttga ggaaagcggc gtgagcagcg
      721 tcgatcttgc gggcggcatc ggcgggggta tcaacggcta ggccggccag cgtcgcaccg
      781 tcaagcggcg aacgcgccgt aagggcatca cccttccact ggccgaggtc tacaccgagt
      841 gcgccaagaa tatcgttcag tttcatcact tcctctctat gtcgggtggc tgccgggcac
      901 tgcggcgcgg cccggggcca cggtccgtca gtaccgctct ggaacctgtt ccggcaagta
      961 aaaccatgcg ttcgccggaa cagagtctca gggcttaaaa aaaccgctgc aattgattaa
     1021 tcggcacgac ttggtgcgtt gagagaacca actgcacata gccgagcgtc catctgcgtt
     1081 caggttatgc gattagaacg cgtttcaccg gatctggcga gccttgggga gtcatgcggc
     1141 gggttggcct gctctaccgg ctcgccagtg caagcttcag ccgccgcacg ccttcgaaca
     1201 cttcggcctc gcccggcgcc gcagcgaacg aaagccgcat gctcgattcg tccggatcgc
     1261 gcgcgtaaaa cgccggtccc ggcacgtaga tcacgttctg ctcgatcgcg cgcttgagca
     1321 aatcggcgga acgacgaccg cccgtcaatc gcgcccagac aaacatgccg ccttcgggca
     1381 tcacatactc gatctcgtca ggcacaaact ggcgcaatgc actggacaac gcctcacaac
     1441 gcttgcgata cgccagcgcg atggtctgca cgtgttccgc gagtcgccca cgctccagat
     1501 agtggcgcgc cgtttcctgc gcgagcggcg aggtgcagag atcgctcgtc tgctttgcga
     1561 caagcatgcg acgtgtgatg gcaggcggcg caatcgacca gccgatgcgc aagcccggcg
     1621 ccacgatctt cgagaggctg ccgaaataca cgacccagtc gctcgcgccc gggatggcat
     1681 cggcgagtgc ggttatcggc ttcaccggtt cgcccgagaa gcgcagctcg ccgtacggat
     1741 catcctcgac cagcacgaaa cgaaaccgca tcgcgagccg cgcaagcgct tcgcgacgcg
     1801 ccgccggcaa agttgcgccg gtcgggttcg cgaaggttgg caccgtgtag agcagcttcg
     1861 gccgggtagc cggatcgagc gcctcaagct gctcggcgag cgcatccaca tcgataccct
     1921 gcgcgtcagt tcgcaccggg atcagacgcg cgcccgcgag ccgcaacgcc tggatcgcgg
     1981 ccggatatgc tggctcctcg atcagcacag catcgcccgg tgcgaccagg atcttgatca
     2041 acaggtcgag cccttgctgc gaacccgtgg tcacaatcac gtcgtccaca tcgcgcgtca
     2101 cgccgcgatc agtcattaac cgcaggatcg cgcggcgcag agcgggcgag ccggccgtgt
     2161 cgccgtattg caggcacgca atcggatcgg acgaataggc gtcctccatt gcctggccga
     2221 tacccgcccg gtcgaagaga tccttcgacg gatacccgcc ggcgaatgaa atcatcccgg
     2281 gccggctgag gtacttgaaa agctcacgga tc
//
LOCUS       DATGBK010001673         2674 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_228450, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001673 DATGBK010000000
VERSION     DATGBK010001673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228450"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..664
                     /locus_tag="VKJ77_23470"
     CDS             <1..664
                     /locus_tag="VKJ77_23470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC48298.1"
                     /translation="MSAQWQVGKLYATAAYELHKAVNRSSDVAPGTPDAFGNIIDPNS
                     DVADEDARKFGIQYGFSKRTIFSALYEDMRRYVQPQLVPFNERTRSGTWFALTQYLGG
                     MDNVNFGWAHANPTPGDPGQHNTPGGANPDNIANLYTVAFKHVVDPHLSWYANYAVTA
                     NHAAAHYDLGAGGHGVTTDCHDATQLSAFDPTTGTVTGTGPHCFAGATLRGLSAGMQV
                     RF"
     gene            complement(709..1572)
                     /locus_tag="VKJ77_23475"
     CDS             complement(709..1572)
                     /locus_tag="VKJ77_23475"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HMC48299.1"
                     /translation="MNARTITLLAAAQLAIGAAAIFARFALADGGPIAVSALRLLIAS
                     VPLAAVAAFRGAFRLRLWPTERRLALAGLMLALHFALWIASLQYASVAVSTLLVCTTP
                     IFTEVYAVARARRIRGDILASIALALVGVAIVVGAPAKTDTPLGIVLALGGSVAIAVY
                     LILIRGTDARYSTLAVVGRTYPIAALILLVATVLVHDPIPPFAATSAWAGILAMALLS
                     QLFGHTALNAAVRTLSATFVATVTLIEPAIAAGLAALIFHERLSPATLGGSVLILAAI
                     GIALRAEARTQ"
     regulatory      1630..1765
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1762..>2674
                     /locus_tag="VKJ77_23480"
     CDS             1762..>2674
                     /locus_tag="VKJ77_23480"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008334751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HMC48300.1"
                     /translation="MATMNTPTNKTITREPFPASHKVYAQGSQPSIQVPMRAITLTTG
                     EIHTVYDTSGPYTDTNVEIDVMAGIDPLREAWIAGRNDTVELERPSSIYRVARESMKE
                     LDELRFRPRRKARVAAKGANVSQMHYARRGEITPEMEFIAIRENVKPEFVRDEVARGR
                     AVIPLNINHPESEPMIIGRNFLVKINANIGNSAIGSSIEEEVEKMAWATRWGADTVMD
                     LSTGKNIHETREWILRNSPVPIGTVPIYQALEKVNGKAEDLTWEIYRDTLIEQAEQGV
                     DYFTVHAGVRLQYIPLTAKRVTGIVSRG"
BASE COUNT          604 a          791 c          818 g          461 t
ORIGIN      
        1 tatgagcgcc cagtggcaag tcggcaagct ctatgcgacg gccgcgtacg aacttcacaa
       61 agctgtcaat cgcagcagtg atgttgctcc cggtacgccc gacgcgttcg gcaatataat
      121 cgatccgaac tccgacgtcg ccgacgaaga cgcgcggaag ttcggtatcc agtacggctt
      181 ctccaagcgc acgatcttca gcgcgttgta cgaagacatg cgtcgctacg ttcagccgca
      241 gctcgtgccg tttaacgaac gtacccgcag cgggacgtgg tttgcgctca cccagtacct
      301 tggcggaatg gataacgtca acttcggctg ggcgcacgcc aatccgacac cgggcgatcc
      361 gggacagcac aacacgcccg gtggcgccaa tccggataac atcgcgaact tgtataccgt
      421 cgcgtttaaa cacgtggtcg atccgcattt atcgtggtac gcgaactatg cggtgacagc
      481 taatcacgcc gcagcccatt acgatttggg cgcgggcggt catggcgtta cgacagattg
      541 ccatgatgca acccaactct cggcattcga cccaacgacc ggcacggtaa cgggcactgg
      601 cccgcactgc ttcgccggtg caacgttgcg gggactctcg gcaggtatgc aagtgcgctt
      661 ctaaagcacg tgcagaaaac gaaaaagccg cgcgctgcgc ggcttttttt attgtgtacg
      721 cgcttcggct cgcaacgcaa tgccgattgc ggctaagata agcacggagc cgcccagtgt
      781 cgcaggcgat aaccgttcgt gaaagatcag cgccgcaagt cccgccgcga tcgcgggttc
      841 gatgagggtt accgtggcga cgaacgttgc gctaagggtt cggacggccg cgttaagcgc
      901 cgtgtgtccg aagagttgcg ataataacgc cattgcaaga ataccggccc acgcgctcgt
      961 cgccgcgaac ggaggaatcg gatcgtgcac gagcaccgtc gccacgagca agatgagcgc
     1021 cgcgatcgga taggtgcggc cgacgaccgc gagcgtcgag tagcgcgcgt cggttccgcg
     1081 aattaaaata agatagacgg cgatcgcaac ggatcctccg agtgcgagca cgatgccgag
     1141 cggcgtgtcc gtctttgccg gagcgccgac gacgattgcc acgccgacaa gggcgagtgc
     1201 aatgctcgcc aagatgtcgc cgcgaatgcg ccgtgcgcga gcgacggcat acacttcggt
     1261 aaaaatcggt gtcgtgcaca cgagcagcgt cgaaaccgcg acgctcgcgt actgcaacga
     1321 cgcgatccac aatgcaaagt gcagcgcgag catcaaacct gcgagcgcca aacgccgttc
     1381 ggtcggccaa agccgcaggc ggaatgctcc gcgaaaggcg gccacggctg caagtggtac
     1441 cgaagcaatg agcagacgaa gcgcggaaac cgcgatcggg ccgccgtcgg ccaaggcaaa
     1501 gcgcgcgaag attgccgctg cgcctatagc gagttgcgcc gcggcaagca aagtgatggt
     1561 acgcgcgttc acgacctacc ggcttcttcg ccgggcactt gacatccggt gccgccgggc
     1621 gtagcgtcag agaaccgcta cgggagctcg gttgggccgg gctgagaggg cgatgttcaa
     1681 tcgccgaccg tggacatacc gattgccggt atgttcatac ctgatccgga taatgccggc
     1741 gtaggaaaag gagatgcgat catggcgacg atgaatacgc ccaccaacaa gacgatcacg
     1801 cgcgagccgt ttccggcatc gcataaagtc tacgcgcaag gctcgcaacc gtcgatccaa
     1861 gtgccgatgc gtgcgatcac ccttaccacg ggcgagattc acaccgtcta cgatacgagc
     1921 ggaccgtata ccgataccaa cgtcgagatc gacgttatgg ccgggatcga tcccctgcgc
     1981 gaggcgtgga ttgccgggcg caacgatacc gtcgaattgg aacgtccctc gtcgatctat
     2041 cgcgttgcgc gcgagtcgat gaaagaactc gacgagttgc gcttccgccc gcgtcgcaag
     2101 gcgcgcgttg cggcaaaggg tgcaaacgtc tcgcagatgc attacgcgcg acgtggcgag
     2161 attacgccgg agatggaatt catcgcgatt cgcgagaacg tgaaacccga attcgtgcgc
     2221 gatgaagtcg cgcgcggtcg cgcggttatt ccgctgaaca tcaaccatcc cgagagcgaa
     2281 ccgatgatca tcggccgcaa tttcttggtg aagatcaatg ccaacatcgg caattccgcg
     2341 atcggctcgt cgatcgaaga agaagtcgag aagatggcgt gggcaacccg ctggggcgcc
     2401 gacacggtga tggatctgtc gaccggcaag aacattcacg aaacacgcga gtggattttg
     2461 cgtaattcac ccgtgccgat cggcaccgtt ccgatctatc aggcgctcga aaaagtcaac
     2521 ggcaaagccg aagatctgac ctgggaaatt tatcgcgaca cgttgatcga gcaggccgaa
     2581 caaggcgtcg attatttcac ggtacacgcc ggcgttcgtc tgcagtatat cccgctgacc
     2641 gccaaacgcg taacgggtat cgtatcgcgc ggcg
//
LOCUS       DATGBK010001674         1929 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_112502, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001674 DATGBK010000000
VERSION     DATGBK010001674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112502"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VKJ77_23485"
     CDS             complement(<1..387)
                     /locus_tag="VKJ77_23485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HMC48301.1"
                     /translation="MDPASIDETLAALSGQQYFASRELATGLFLALKMQRPLFLEGEP
                     GVGKTELAKAAAGMLGTQMLRLQCYEGLDTASALYEWDYPRQIMALRLAEAAGEQPSN
                     DSLYKSEFLLKRPLLQALMPDPSNPGA"
     gene            complement(489..1289)
                     /locus_tag="VKJ77_23490"
     CDS             complement(489..1289)
                     /locus_tag="VKJ77_23490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HMC48302.1"
                     /translation="MYSFDYQRPDKSDAAVAFLKQHDDAKYLSGGQSLLPTMRLRLAQ
                     PSALVDVTRIGTMKDITVTGDKVTIGGAVCHAQVAANPEVQRALPGLADLAGHIGDRQ
                     VRERGTIGGSLANDDPAACYPAAVLALNATIVTDRRRITADDFFLGMYETALEPDELI
                     TSVEFPIVERAGYEKFRNPASHFALVGVFVAKHAGGVRVAITGAAASVFRASALEDAL
                     SKDFSVAAARGTSISADTLNEDMHASAVYRAHLIPILAGMAVDRANAF"
     gene            complement(1302..>1929)
                     /locus_tag="VKJ77_23495"
     CDS             complement(1302..>1929)
                     /locus_tag="VKJ77_23495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC48303.1"
                     /translation="VAGTDRTKAFAEVSLAAYVPHNFPLDKLEPGLNENAFYDPSNFT
                     YPSGAYLCEVEVDQDTGETRIQKFTAVDDFGNIINPMIVEGQVHGGIGQGIGQAMLER
                     AVYDNESGQLMSGSFMDYAMPHASDLPNFDVETSKGTPCVHNPLGVKGCGEAGAIGSP
                     PAVINAIIDALSPLGVTDLQMPATPHRVWAAMHAAADASAARGVSTPA"
BASE COUNT          384 a          624 c          552 g          369 t
ORIGIN      
        1 agcgcccgga ttcgagggat cgggcataag cgcttgcagc aacggccgct tgagcaggaa
       61 ctcgctttta tagagcgaat cgttcgaggg ttgttcacct gccgcctcgg caagccgcag
      121 cgccatgatc tggcgcggat agtcccattc gtagagtgcg ctggcggtgt ccagcccttc
      181 atagcattgc agccgtaaca tttgcgtgcc gagcatgccg gcggccgctt ttgccagttc
      241 agtcttgcca acacccggtt caccttccag aaatagcggg cgctgcattt ttaacgccag
      301 gaaaagcccc gttgcgagtt cgcggctggc gaagtattgc tgcccgctca gcgcggcgag
      361 ggtttcgtcg atggatgccg ggtccatgag gttcctgggt ctgggtggat caatgtttgt
      421 ttcgctcgcg ccgggagaac cccagccgat tcatcggcgc gagcaaaaaa ccgcgtgcga
      481 acgaaaagct agaacgcgtt ggcccgatca accgccatcc cggcaagaat cggaatcaaa
      541 tgtgcccggt acaccgcgct cgcgtgcata tcctcgttga gcgtatcggc ggaaatcgac
      601 gtgccgcgcg ccgccgcaac cgagaaatcc ttcgataatg catcttcaag cgccgacgcc
      661 cgaaatacgc tcgctgccgc gcccgtgatc gccactcgca caccgccagc gtgtttcgca
      721 acaaacaccc ccaccagcgc aaagtgcgac gcaggattgc gaaacttctc gtaccccgcc
      781 cgctcgacga tcgggaattc aaccgatgta atcagctcat caggttctaa agctgtctcg
      841 tacatgccaa ggaaaaagtc atcggcggtg atacgccttc tatccgtcac gatagtcgcg
      901 ttcaacgcca gcaccgccgc cggataacac gccgccgggt catcgttggc aagcgacccg
      961 ccgatcgtcc cgcgctcccg aacctgccgg tcgccaatat gaccggcaag gtcagccaac
     1021 cccggcagcg cgcgctgcac ctccgggttc gcggcaacct gcgcatgaca caccgcgccg
     1081 ccaatagtca ccttgtcacc cgtcacggtg atgtccttca tcgtgccaat acgcgtcaca
     1141 tccaccagcg ccgacggctg cgcgagccgc aagcgcatgg tcggcagcaa actctgcccg
     1201 cccgaaagat atttggcgtc atcgtgttgc ttgagaaacg ccaccgctgc gtcggacttg
     1261 tccggccgtt ggtaatcgaa tgagtacatg tcgaagtcct cttaagcggg agtcgaaacg
     1321 ccgcgagcgg ccgatgcatc ggcggctgca tgcatcgcag cccatacgcg atgcggcgtg
     1381 gcaggcatct gcagatcggt cacgccaagc ggcgaaagcg cgtcgatgat cgcgttgatc
     1441 acagccggcg gcgagccgat cgcacctgct tcgccgcagc ctttaacgcc cagcgggtta
     1501 tgcacgcacg gcgtgccctt cgacgtttcc acatcgaagt tgggcagatc ggacgcgtgc
     1561 ggcatcgcgt agtccatgaa tgagccggac atcaactggc cgctttcgtt gtcatacacg
     1621 gcgcgttcca gcatcgcctg accgatgccc tgcccaatcc cgccatgcac ctgaccttca
     1681 acgatcatcg gattgatgat gttgccgaaa tcatccacgg cggtgaactt ctggatgcgc
     1741 gtttcgccgg tgtcctgatc gacttccacc tcgcacaaat acgcgccaga tggatacgtg
     1801 aagttgctcg gatcgtagaa cgcgttttcg ttgaggccgg gttcgagttt gtcgagcggg
     1861 aagttgtgcg gcacgtaagc cgccagcgat acctccgcga acgccttcgt ccggtcggta
     1921 ccggccacc
//
LOCUS       DATGBK010001675         1675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_343842, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001675 DATGBK010000000
VERSION     DATGBK010001675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343842"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VKJ77_23500"
     CDS             <1..431
                     /locus_tag="VKJ77_23500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HMC48304.1"
                     /translation="LRDELLPLATLVTPNLPEAAALLNVASAEDEDAMVRQGEALRAL
                     GARAVLMKGGHLSSADSPDWLIEDSGSLRLGGPRVPVKNTHGTGCTLSSSIAALLPQR
                     DSLAAATADAKLYLTGAIEQSERLDVGHGVGPVHHFFRWW"
     gene            complement(474..1460)
                     /locus_tag="VKJ77_23505"
     CDS             complement(474..1460)
                     /locus_tag="VKJ77_23505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1853 family protein"
                     /protein_id="HMC48305.1"
                     /translation="MTVADEITALHDPAVRDLAWLLFSPDLLSASRAGAPLALPAATE
                     IEGETTLAWLHALDRDPAALHAQVHKPSLTRLGFYAEALLEYFLTHGPLARMIAANIP
                     LRTAERTLGEVDFLLESVRGERLHWELAVKFYLHIGKGDGAATLAHYVGPNLQDRFDL
                     KHARLLNHQLGLSARDEFASLGFEGPWRAELFVKGRLFYRDDGLGRSLASNPPPELAG
                     DHLRGWWKTASEWQDSKADGLFASLPRLGWMAERTLSAQEGDALAEQMAALSERVATL
                     SSPIMVARYERYDGHYARDFLTGDGWREHSRGFIVPDEWPERAAEFAADFAT"
     gene            complement(1457..>1675)
                     /locus_tag="VKJ77_23510"
     CDS             complement(1457..>1675)
                     /locus_tag="VKJ77_23510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011851828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HMC48306.1"
                     /translation="ALGRFAAQSLLKTEASIASLRGRVHDYQGVPVIVTYHPAYLLRS
                     LPDKAKAWADLCLAQATYRKSLQAADGP"
BASE COUNT          320 a          534 c          533 g          288 t
ORIGIN      
        1 cgttgcgcga tgaactgctg ccgctcgcga cgctggtcac gccaaacttg ccggaagcgg
       61 ctgcgttact gaacgtggca tcagccgaag atgaggatgc gatggtgcgc cagggcgaag
      121 cgctgcgagc attgggcgcg cgggcggtgt tgatgaaggg cggccatctg agttccgccg
      181 atagccccga ctggctgatc gaggacagtg gatcgctacg gcttggcggg ccgcgcgtgc
      241 cggtgaaaaa tacgcatggg acggggtgca cgttgtcgtc gtcgattgca gcgctgctgc
      301 cccaacgcga ctcgctcgct gccgctaccg cggatgcgaa gctttatctg accggcgcga
      361 tcgagcagag cgagcggctg gatgttgggc acggggttgg cccggtgcat cattttttca
      421 ggtggtggtg agggtcgctt tgctacgcgt gagctcggcc ggctcgaccc tgcttaagtc
      481 gcaaagtcag cggcaaactc agcggcgcgc tccggccatt catcgggcac gataaaaccg
      541 cgcgagtgct cgcgccagcc atcaccggtc aagaagtcgc gggcgtagtg gccgtcgtag
      601 cgctcgtagc gcgcgaccat gatcggcgac gacagcgttg caacgcgctc ggacaacgcc
      661 gccatctgct cagccagcgc atcaccctct tgcgccgata acgttcgttc tgccatccat
      721 cccaacctgg gcaacgaggc aaacagtcca tccgccttcg aatcctgcca ctccgacgcc
      781 gttttccacc agcctcgcag atgatcgccg gcaagttcgg gcggtggatt cgacgcaaga
      841 ctgcgaccga gaccgtcatc gcgataaaac aagcgccctt tgacgaataa ctcggcacgc
      901 cacggaccct cgaaaccgag cgatgcaaac tcgtcgcgcg cactcaaacc cagctgatga
      961 ttcaagagcc gcgcgtgctt caaatcgaag cgatcttgca gattcggacc gacgtagtgg
     1021 gctagcgtag cagcgccgtc acccttgccg atgtgcagat aaaacttcac cgcgagctcc
     1081 cagtgcagcc gctcgccacg cacgctctcc aacaggaaat cgacttcgcc aagcgtacgt
     1141 tcagccgtgc gcaatgggat gttcgccgcg atcatccgcg cgagcgggcc atgcgtcagg
     1201 aagtattcga gcaacgcttc ggcgtagaag ccgagccgcg tcagcgacgg tttgtgaacc
     1261 tgcgcgtgaa gcgccgcggg gtcgcgatcg agcgcatgga gccaagccag cgtggtttcg
     1321 ccttctatct ccgttgcggc gggaagcgcg agcggcgcgc ccgcgcgcga cgcgctcagc
     1381 aagtccggcg agaacagcag ccaagcgaga tcccgtacgg ccggatcgtg gagcgccgtg
     1441 atctcgtccg cgaccgtcac gggccgtctg ccgcctgcag cgacttgcgg taagtagctt
     1501 gggcgagaca cagatcggcc catgccttgg ctttatcggg gagactgcgc agcaagtagg
     1561 ccgggtgata cgtgacaata accggcactc cttgatagtc gtgcacccgt ccccgcagcg
     1621 acgcaatgct cgcctccgtc ttgagcaggc tctgcgcggc aaaccgtcca agcgc
//
LOCUS       DATGBK010001676         1908 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_343880, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001676 DATGBK010000000
VERSION     DATGBK010001676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343880"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..808)
                     /locus_tag="VKJ77_23515"
     CDS             complement(<1..808)
                     /locus_tag="VKJ77_23515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008345325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC48307.1"
                     /translation="MFPRPTAPLLLTRSLTLLASACALSACTVGPDYAGAPQVAPDAA
                     HASNFVRTPAVGIVSTRAPSQWWLSLNDPQLNVLIDAALAHNPDVHAAQARLREARAQ
                     LQHQKANGMPNASFDAAALRMREPNLSSLSSSQGSSGSSSSSGGGPLQLYTAGFDATW
                     EIDLFGGTRRAVEAATAEADAVDADLADTQVSLAAEVAQAYVDLRDEQQRLTLAQGSA
                     EIEQQMLTLTQQRRAHGTAADVDVERLTTQVENTRSTLTPLDEQVAESLDQ"
     gene            complement(829..>1908)
                     /locus_tag="VKJ77_23520"
     CDS             complement(829..>1908)
                     /locus_tag="VKJ77_23520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011658318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48308.1"
                     /translation="LAENISWSWCFFINLPVCLALITLLIVGLPSDRPQWSTFLKADW
                     VGIIGLTIGLSSLTVVLEEGQRERWFESSMIVSLTCVSLAGMVLIAISQLTATRPIMR
                     LNLMRNPRYASVIVIVFAVGAGLYGVSYLLPQFLGIVSGYNAQQSGAIMLISGVPAFM
                     IMPILPRILGKLDFRMLVIAGLLLFALSCMLDIDLTAQSVGHDFFWSQLIRGFAQILA
                     LMPLNQASMAAVSREDSGDAAGLYNMARNLGGSVGLAIIGTVIDRRTTFHTAMIRESL
                     TANSLVGQERLTSSAASWFAQTGDMAYSKMRALGQIAAQIHMQATVITYSETFYLLGL
                     ALLACVPLALLLKTPRGPVSPSAGH"
BASE COUNT          382 a          571 c          637 g          318 t
ORIGIN      
        1 gctgatcgag cgactcggcg acttgctcgt ccagcggcgt caacgtcgag cgggtgttct
       61 cgacctgcgt ggtcaggcgc tccacatcga cgtcggccgc cgtgccgtgc gcgcggcgct
      121 gctgcgtcaa cgtgagcatc tgctgctcga tttccgcgga gccttgtgca agcgtcaggc
      181 gctgctgctc atcacgcaga tctacgtagg cttgcgcgac ttccgcggca agcgacactt
      241 gcgtgtcggc gaggtcggcg tcgaccgcgt ccgcttccgc cgtagcggct tctaccgcgc
      301 ggcgcgtgcc gccgaacaga tcgatctccc acgttgcatc gaagccggct gtatagagct
      361 gtagcggtcc tcctccggac gaggatgagc tgcccgagct gccctgagac gacgacagcg
      421 aactcaggtt gggctcgcgc atacgcaacg cggcggcgtc gaacgacgcg ttgggcatgc
      481 cgtttgcctt ttggtgctgc aactgcgcgc gggcttcacg cagacgcgct tgcgccgcgt
      541 gaacgtccgg attatgcgcg agcgcagcgt cgatcagcac gttcaattgc gggtcgttga
      601 gcgatagcca ccattgactt ggtgcgcgtg tcgaaacgat gccgaccgcg ggcgtacgga
      661 cgaagttgga ggcatgcgcc gcgtcgggtg cgacctgggg cgccccggcg taatcggggc
      721 cgacggtgca ggccgagagc gcgcaggcgg aagccagcag cgtaagagac cgtgtaagaa
      781 gcagaggggc agtagggcga gggaacatcg tggatagtgt ctttgccgtc aatggccggc
      841 ggacggcgaa acggggccgc gcggagtctt caggaggagc gcgagcggca cgcaggcaag
      901 cagcgcgaga ccgagcagat agaacgtttc agagtaggtg atgacggtgg cctgcatatg
      961 gatctgcgcc gcgatctggc caagcgcgcg cattttggag taggccatgt cgccggtttg
     1021 cgcgaaccag ctcgcggcgc tcgacgtcaa gcgctcctgg cccaccagcg agttggccgt
     1081 cagcgattcg cggatcatcg cggtatggaa ggtagtgcgc cggtcgatca cggtaccgat
     1141 gattgcgagc ccaaccgagc cgccaagatt gcgggccatg ttgtagaggc cggctgcatc
     1201 gcctgaatcc tcacgcgaaa cggctgccat cgacgcttgg ttcaacggca tcagcgcgag
     1261 gatttgcgca aagccgcgta tcagttggga ccagaagaag tcgtggccga cgctctgggc
     1321 ggtcaggtcg atatcgagca tgcagctcaa cgcaaacaac agcagtcccg cgatcaccag
     1381 catgcgaaag tcgagcttgc cgagaatgcg cggcaggata ggcatgatca tgaacgcggg
     1441 cacgccggat atcagcatga tggcgcccga ctgctgcgcg ttatatccgg acactatgcc
     1501 gaggaactgc gggagcaggt acgacacgcc atacagtccc gcaccgaccg caaacacaat
     1561 gacaatgacg ctcgcataac gcggattgcg catcaggtta agacgcatga tgggccgcgt
     1621 cgcggtgagt tgcgaaatgg cgatcagcac catgccggcc agcgacacgc aggtcagcga
     1681 gacgatcatg ctggactcga accagcgttc gcgctgccct tcttcgagca cgacggtcaa
     1741 cgagctcagg ccgatcgtga ggccaataat accgacccag tccgccttca agaaagtgct
     1801 ccactgcggc cggtctgacg gcagcccgac gatcagcaag gtgatcagcg caagacatac
     1861 aggcaggttg ataaagaagc accagctcca gctgatgttc tccgccag
//
LOCUS       DATGBK010001677         1867 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_19524, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001677 DATGBK010000000
VERSION     DATGBK010001677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19524"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..790)
                     /locus_tag="VKJ77_23525"
     CDS             complement(<1..790)
                     /locus_tag="VKJ77_23525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019247679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48309.1"
                     /translation="MLRIIANRALVAIPTLILVSMMIFGLQKMLPGDPVLAMAGEDQN
                     PQVIATLRLKYHLDEPVPVQYALWVKDILHGDLGASLRTDVPVTKLIAQKLPVTLQLA
                     VMAMIFAIGIGMPLGVLSAANKGKALDYGANVLALTGMSIPNFWLGIILIFLVSVKWQ
                     LLPSSGYVSPTEDFWLSIKTMLMPAFVLGAALGAQLMRHTRSAMLSVLRSDYIRTARA
                     KGLLRGTVVVKHGFRNALIPIVTVLALLFGELLAGAVLTEQVFTI"
     gene            complement(798..>1867)
                     /locus_tag="VKJ77_23530"
     CDS             complement(798..>1867)
                     /locus_tag="VKJ77_23530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013339611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48310.1"
                     /translation="AALLATLTDRAGMMLAPKTLADDASVSTHPVCSGPYKFVERVQN
                     DRVVLQKFAGYWDADKYPIQKVIFQPIPDSTVRLANVRSGSLDMLERLAPSDVASVKS
                     DKNLNFISMSGLGFYDLTFNVSNGPRAPKAFKDKRVRQAFELAIDRDAINQVIGGGIF
                     SPIGQAIPSNSPYFDASIKTTKRDIPKAKALLKAAGFEQLNVELTFGNNTVSNQMAQM
                     LQAMLSEAGINLKLRPTDYAAALNASTKGDFELLYLGWSGRTDPDGNLHQFVTCKGNL
                     NYGRYCNPDVDKLLDDARVKPTVAERKPIYDAAQKILVDEDPIIYLYAQPWPYALSKK
                     VQGFTPYPDGLIRLRGVSIKG"
BASE COUNT          398 a          551 c          540 g          378 t
ORIGIN      
        1 gaatggtgaa cacttgctcc gtcagcacag cgccggcaag cagctcgcca aacagcagcg
       61 caagcacagt aacgatcgga atcagtgcat tgcgaaagcc gtgcttgacc accaccgtgc
      121 cgcgtaacaa ccctttagcg cgcgccgtcc gaatgtagtc gctgcgcaga acgcttagca
      181 tcgcgctacg cgtatgccgc atcaactgcg caccgagcgc cgcgcccaac acaaacgcgg
      241 gcatcagcat ggtcttgatg ctcaaccaga agtcctcggt cggcgacacg tatccggatg
      301 aaggcagcaa ctgccatttc acagagacga gaaagatcag gatgatcccg agccagaagt
      361 tcgggatcga catgccggtc agcgcgagaa cattagcgcc gtaatcgaga gctttcccct
      421 tgttcgccgc cgataaaacc ccaagcggca tgccaatgcc aatcgcgaag atcatcgcca
      481 tcacggccag ttgcaacgtc accggcaact tctgcgcgat gagtttggtc accggcacat
      541 cggtcctcag cgacgcgccc agatcgccat gaagaatgtc cttcacccaa agcgcgtatt
      601 gcaccggcac gggttcatcg aggtgatatt tcagccgcaa cgtagcgatg acctgcgggt
      661 tctggtcttc gccggccatc gccaggaccg gatcgccggg tagcatcttc tgcaggccga
      721 agatcatcat cgacaccagg atcagtgtcg ggattgcgac aagcgcacgg ttggcgatga
      781 ttcgcaacat ggacggatta ccccttgatg ctcacgccac gcagacggat cagaccgtcc
      841 ggatagggcg tgaagccctg cactttcttc gacaacgcat acggccaagg ctgcgcgtag
      901 agatagatga tcggatcttc gtcgacgagg atcttttgcg ctgcgtcgta gatcggcttg
      961 cgctcggcga cggtcggttt cacgcgcgcg tcgtcgagca gcttgtccac gtcaggattg
     1021 caatagcgcc catagttcag attgcccttg caggtcacga actggtgcag gttgccatcc
     1081 gggtccgtgc ggcccgacca accgagatat agcaattcga agtcgccttt cgtcgatgca
     1141 ttcagcgcag cagcgtagtc cgtcggacgc aacttcagat tgatgcccgc ttcggagagc
     1201 atggcttgca gcatctgcgc catctggttc gataccgtgt tgttaccgaa ggtcagctcc
     1261 acattgagct gctcgaaacc ggccgccttg agcaacgctt tcgccttcgg gatatcgcgt
     1321 ttggtcgtct tgatcgatgc atcgaagtac gggctgttag acggtatcgc ctgaccgatc
     1381 ggcgagaaaa tcccgccgcc gatcacctgg ttgattgcat cgcgatcaat ggcgagttcg
     1441 aacgcttgac gcacgcgttt gtccttgaac gccttcggcg cacgcggtcc gttcgagacg
     1501 ttgaacgtca ggtcgtagaa gcctaagccg ctcatcgaaa tgaagttgag attcttgtcg
     1561 cttttcaccg atgctacgtc ggaaggcgcg agacgttcca gcatgtcgag tgaacccgag
     1621 cgcacgttcg cgaggcgcac ggtgctatcg ggaatcggct ggaatatgac tttctggatc
     1681 gggtatttat cggcgtccca gtagcccgca aatttctgca gcactacccg gtcgttctgc
     1741 acgcgttcga caaatttgta cggacccgag caaaccggat gcgtggagac actggcgtcg
     1801 tcggcgaggg ttttcggcgc gagcatcatg ccggcgcgat cggtgagcgt agcgagcagc
     1861 gcagcgt
//
LOCUS       DATGBK010001678         2525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_320471, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001678 DATGBK010000000
VERSION     DATGBK010001678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320471"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..379)
                     /locus_tag="VKJ77_23535"
     CDS             complement(<1..379)
                     /locus_tag="VKJ77_23535"
                     /inference="COORDINATES: protein motif:HMM:NF013166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC48311.1"
                     /translation="MNVTLICLPFAGASAAVYREWGALLPSWIRLHALDLPGHGVKRA
                     QPALHRWPDVADALGREALRAIDGPFAIFGYSMGALAGLELAHWLHRGHDLMPVWFGA
                     AACAAPACRTLGATWLDCTDEAMI"
     gene            complement(392..640)
                     /locus_tag="VKJ77_23540"
     CDS             complement(392..640)
                     /locus_tag="VKJ77_23540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013690465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbtH family protein"
                     /protein_id="HMC48312.1"
                     /translation="MSWGDENTTYNVVINHEERYSIWPDYKALPAGWTAVGKTGKKDD
                     CLAYIDAVWTDMRPLSLRQAMEADVVAKTAADVGAKAA"
     gene            868..1464
                     /locus_tag="VKJ77_23545"
     CDS             868..1464
                     /locus_tag="VKJ77_23545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012429002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HMC48313.1"
                     /translation="METMNPGVSADALNVLMTRQSHWPLTEPEPDNSQLQQIFDAALR
                     APDHGALRPWRFVLIRGDARLKLGELLVDLACARAPGEPRSAHEHRGRRALAAPVVIA
                     LVVSLTRETKVPEVEQLLSVGAAAMNMLNAIHALGFGGFWATGPDSYEQQMHRALGLT
                     ERDRLLGFLFVGTPPEGVRAVERPSSDRYVTEWLEACA"
     gene            1678..2493
                     /locus_tag="VKJ77_23550"
     CDS             1678..2493
                     /locus_tag="VKJ77_23550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48314.1"
                     /translation="MTQTSTQTSRHDFIDDLDKPIQPPCYETQPQFLPLRMNETLSLG
                     RCTPAPGEIFVFRFRSQWQRVSAHDSAQWLTQDETRRAALLPSPALRYRYISSRAVLR
                     LAAARMLGCQPDAVDLRDDGKGRMFAQGATGDVVLYADIAYAGVWIMLGISASYLGLG
                     TSLPSYKMASDDDAPLPGQVSSQVSPSSDSLVFSKQRARDNSLLSAAGYRSAIDHSNL
                     APGEPAPALASVSRGEPWYVFDLPMPGQLCASVCSSTPLSTILAFGWSKRNDA"
BASE COUNT          481 a          777 c          748 g          519 t
ORIGIN      
        1 cgatcatcgc ttcgtccgtg caatccagcc atgtcgcgcc gagcgtccgg caggccggcg
       61 cagcacacgc cgccgcaccg aaccacacgg gcatgaggtc atgtccgcgg tgcaaccagt
      121 gcgccagttc gagaccggcc agcgcgccca tgctgtagcc gaagatcgcg aaaggtccat
      181 cgatcgcccg caaagcttcg cgtcccagtg cgtccgccac gtccggccag cgatgcagcg
      241 caggttgcgc gcgtttcaca ccgtggccgg gaaggtcgag ggcgtgaagg cgtatccacg
      301 atggcagcaa tgcaccccac tcccgataaa ccgccgcgct tgctccggcg aacggcagac
      361 agatcagcgt gacgttcatc cgcgacctgt ctcaggccgc tttggcgccg acatcggccg
      421 ccgtcttggc tacgacatct gcttccatcg cctgacgcag gctgaggggc cgcatgtcgg
      481 tccacactgc gtcgatgtac gcaaggcagt cgtccttctt gccggtcttg cccacagcgg
      541 tccatcctgc gggcagcgcc ttgtagtccg gccaaattga ataccgttcc tcatggttaa
      601 tcacaacgtt gtaggtcgtg ttttcgtcgc cccagctcat caaaaactcc ttaatgcgaa
      661 tgagaatgaa tattattaca ggttaaatcg tctgatgcaa agaccgcttt tcaacgttgt
      721 gacggcaaac tcagagttcg aatgccaaat tgtgaacagg atcgaagcat aggcatctgc
      781 catgacaaaa tcaagttatt gagaatcatt tgcaatacgg cgcgtttttc gggatcatgg
      841 atgccttgag aaagcttgga cctatccatg gaaacgatga accccggcgt cagtgccgac
      901 gccctgaacg tgctgatgac acgccagtcg cactggccgt taaccgaacc cgagcccgac
      961 aattcccagc ttcagcagat tttcgatgcc gccctgcgcg cccccgatca cggcgcgttg
     1021 cggccgtggc gctttgtact gattcgcggc gacgcgcggc tgaaactcgg cgaattgctg
     1081 gtcgatctcg cctgcgcccg ggctcccgga gagccgcgtt cggcgcatga acatcgtggc
     1141 cgccgcgcgc tcgcggcgcc cgtcgtgata gcgcttgtgg tgtcgctgac acgcgagacg
     1201 aaggtcccgg aagtcgagca gttgctgtcc gttggggcag cagccatgaa catgctgaac
     1261 gctattcatg cgcttggttt tggcggtttc tgggcgaccg gaccggatag ttacgagcag
     1321 caaatgcacc gcgcgcttgg gctgaccgag cgtgatcgtt tgctcggatt tttgtttgtc
     1381 ggcacgccgc ccgagggcgt acgcgcggtg gagcgcccct ccagcgaccg ctatgtgact
     1441 gaatggctcg aagcctgcgc ctgaacggtg gcagacagaa ttagcgcgaa cggaacggcg
     1501 acttaacgcc atgttcgttc gtgctcctat ctctcatcgg cttgagagga acgcccggcg
     1561 gttcgccggg ccggtccgga gtgggttaca tccggcccgc gttcggcctg ccggcacgtg
     1621 tcctctcgct ctgaaacggt acttaccatg cccacgggtt tattgactga gcgctcattg
     1681 acgcagacat caacgcagac atcgcggcac gattttatcg atgacctcga taagcctatc
     1741 cagccgccct gctacgaaac gcagccgcaa ttcctgccgc ttcgcatgaa cgaaacgctt
     1801 tcgctaggtc ggtgcacgcc ggcaccgggc gagatcttcg tgttccggtt tcgcagccaa
     1861 tggcaacgcg tcagtgctca cgattcggcg cagtggctga cgcaggatga aacccggcgc
     1921 gctgctttgc tacccagtcc tgcgctgaga taccggtata tttcgagccg cgcagtgtta
     1981 cgactggccg cggcccggat gctcggatgc cagcccgatg cggtcgatct gcgtgatgac
     2041 ggcaagggtc ggatgttcgc gcaaggcgcc acaggggacg tcgttttata cgctgatata
     2101 gcctatgccg gtgtctggat catgcttggc atcagcgcca gttatctggg tttgggaacg
     2161 tcgctgccct cgtacaagat ggcatccgac gacgacgcac cgctgccagg ccaggtatcg
     2221 agccaggtat cgccgtcatc ggatagtttg gtctttagca agcaacgagc acgcgacaac
     2281 agtttgctaa gcgctgccgg atatcgctcg gctatcgatc attcaaacct tgcgccaggc
     2341 gaacccgccc cggctttggc cagcgtgtcc aggggcgagc cctggtatgt ctttgacctg
     2401 cctatgcctg gacaactctg cgcgtcggta tgcagttcaa cgccgctaag caccattctc
     2461 gccttcgggt ggagcaagcg taacgacgct tagcgcttaa tgcatgccct taggtgccgg
     2521 atgga
//
LOCUS       DATGBK010001679         3540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_275101, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001679 DATGBK010000000
VERSION     DATGBK010001679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275101"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..147)
                     /locus_tag="VKJ77_23555"
     CDS             complement(<1..147)
                     /locus_tag="VKJ77_23555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC48315.1"
                     /translation="MNGLQVTHLTLRAGKRMLVAELTQTFAPGEMWCIAGPNDAGKTT
                     LIAAM"
     gene            complement(144..1136)
                     /locus_tag="VKJ77_23560"
     CDS             complement(144..1136)
                     /locus_tag="VKJ77_23560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HMC48316.1"
                     /translation="MNAQRAFMVWTGLGLAAFAVFVASLALGSIAVSPLRVMQALASR
                     STDVIDEIVLSLRLPRALGGFAAGALLGMAGALLQVLLRNPLAEPYVLGVSGGAAAFA
                     LAAMLFSLSWWSVDVAAFAGAFLSILLVLGLARRELWRGEPQDTSPRLLLTGAVIAAG
                     WGALITLMLAVAPENRLRGMVFWLTGDLNGVSMPWTALIALVIALTAIVPAAHQLNIL
                     LRGDVAAEALGVRVVQLRVRVYLVASLAAAAAVTTAGTIGFIGLVVPHVLRLAFGNDQ
                     RMLLPASALAGGLAVMGADLIARTVIAPAQLPVGVITALIGVPVFLWMLLRRAP"
     gene            complement(1214..1486)
                     /locus_tag="VKJ77_23565"
     CDS             complement(1214..1486)
                     /locus_tag="VKJ77_23565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48317.1"
                     /translation="MRSPRNGKRLQRKLQVGPGARCPWGVRAFSDTFHHSKWRPAATA
                     ASIRRASAFADLYYPFSGNPLVTPSVAIPWGGALIDNLDNLFNKDY"
     gene            1869..2252
                     /locus_tag="VKJ77_23570"
     CDS             1869..2252
                     /locus_tag="VKJ77_23570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HMC48318.1"
                     /translation="MLNELESLSQNIGRLIKISERHHQAHDALAQQLEQLRADYANTQ
                     GELAAVREERDALVAERDSLSAKIDDAQIRLNAILEKLPRAKAAPEPDNQLALLPPDG
                     GIEPDTADAAHGALHEESHHHGEKA"
     gene            2249..2563
                     /locus_tag="VKJ77_23575"
     CDS             2249..2563
                     /locus_tag="VKJ77_23575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HMC48319.1"
                     /translation="MTTKQIEVSILGAPYRLACSPETEGALREAVARVDAEMSKVRSA
                     SSVRGTDRIAVMAALSLASELLKLQNSVRHGEAFPAEEIRRTMHQMNEQLGVVISQYE
                     AL"
     gene            2783..2964
                     /gene="ssrS"
                     /locus_tag="VKJ77_23580"
     ncRNA           2783..2964
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VKJ77_23580"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            3126..>3540
                     /locus_tag="VKJ77_23585"
     CDS             3126..>3540
                     /locus_tag="VKJ77_23585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014896324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HMC48320.1"
                     /translation="MHYWLMKSEPNEASIDHLAHAPKKTLPWTGVRNYQARNFMRDGM
                     QVGDGVLFYHSSCPQPGIAGIAKVSSAAYPDPTQFDSTSHYYDPKSSAEKPRWLLVDV
                     HFVKKTPLIPLATLRDHAELADMQVLARGNRLSITP"
BASE COUNT          788 a         1094 c         1025 g          633 t
ORIGIN      
        1 catcgctgcg atcaacgtcg tcttgcccgc atcgttcgga cccgcaatgc accacatttc
       61 gcccggcgcg aaagtctgcg tgagctccgc gaccaacatg cgttttccag cgcgcaacgt
      121 gagatgagta acctgaagcc cgttcatggc gcgcgcctga ggagcatcca caagaacacc
      181 ggcacgccga tcagtgcggt gatgacgccc accggcaact gcgccggcgc gatcaccgtg
      241 cgcgcgatca ggtccgctcc catcacagcc agcccgccag ccagcgccga tgcaggcagc
      301 agcatgcgtt gatcgttgcc gaacgcgagc cgcaacacat gcggcaccac gagcccgata
      361 aaaccaatag tcccggccgt ggtcacggca gcggcggccg ccagcgacgc aacgagatac
      421 acgcgcactc tcaactgcac gacacgcacg ccaagcgcct cggccgctac gtcgccacgc
      481 agcagtatgt tgagctggtg cgcggccggc acgatcgcgg tcaacgcgat caccagcgcg
      541 atcaaagcgg tccatggcat cgagacgccg ttcaggtcgc cggtcaacca gaacaccatg
      601 ccgcgcaagc gattctccgg cgcaacagcg agcatgagcg tgatcaacgc gccccacccc
      661 gccgcgatca ccgcgccggt gagcagcaat ctcggcgatg tgtcctgcgg ttccccacgc
      721 cacaactcgc gccgggcgag gccgagcacc agcagtatcg ataagaacgc gcccgcgaaa
      781 gcggcgacgt cgacgctcca ccacgacagg gagaacaaca tcgcggcgag ggcgaaagcg
      841 gccgcgccac ccgatacgcc aagcacatac ggttcggcca gcggattgcg cagcaagacc
      901 tgcagcagcg cgccggccat gccaagcaag gcacccgcag caaagccgcc cagcgcgcgc
      961 ggcaggcgca ggctgagcac gatttcatcg atcacatcag tcgaccggga cgcgagcgcc
     1021 tgcatcaccc gcagcggcga cacggcgatg ctccccagcg ccagcgacgc cacgaacaca
     1081 gcgaacgcgg ccagaccaag cccggtccag accatgaaag cgcgctgggc gttcatgcgc
     1141 ttaacgttca ctgcggctgt cggccggaca tgatcgaggc gccgcgacac ggcgtgtttt
     1201 acgagtgcgc aagctaatag tccttgttga acaggttgtc gaggttatcg ataagcgcgc
     1261 caccccacgg aatggcaacg cttggggtga ccaacggatt gccgctgaac ggatagtaca
     1321 gatcagcgaa ggctgaagca cgacggatgc tcgccgccgt tgcggccgga cgccatttcg
     1381 agtggtgaaa tgtgtcggag aacgcgcgga caccccacgg acaacgcgcg ccaggaccga
     1441 cttgcaactt gcgttggagt cgcttaccgt tgcgggggct gcgcaagttg gctcgtccgg
     1501 gcggactctg caccggattc ccgtttaact gcgcgctggc aggcacgcac gagcaccaag
     1561 gtggcggcag tttaagagcg gcacaatgac ccgtcaagaa agcgggacaa tgcgggcgta
     1621 cagaccgtcc gtgacgtggt tcgattattc gatttacccc tgttttaagg gctcccgcgc
     1681 gatattccaa agaacgctcg cacgcctgaa tgaatgggag aatgaatctc tataaaacgt
     1741 ttccccctac aaataaaggg ccgcgcccat gctttgaaga ccgactgctg ttacgtctgg
     1801 aaacgaacca aatttctgaa gcgccggaga agcgcgctaa aatgcgaggt cttaagagga
     1861 cgcagcacat gctcaacgaa ctcgaatcac tgtcacagaa tatcggccgg ctgatcaaga
     1921 tcagcgaacg gcatcatcaa gctcacgacg cgttggccca gcaactcgaa cagttgcgcg
     1981 ccgactatgc caacacgcag ggcgaacttg cggccgtgcg cgaagaacgc gacgcactgg
     2041 tggcggagcg cgactcgctg tcggccaaga tcgacgacgc gcagattcgc ctcaacgcga
     2101 ttctcgaaaa attgccgcgt gcgaaagctg caccggagcc ggataaccag cttgcccttt
     2161 tgcctcctga tggcggcatc gaaccggata ccgccgacgc ggcgcacggt gcgttgcatg
     2221 aagaatcaca ccatcacgga gaaaaggcat gacgacgaaa cagatcgagg tatccattct
     2281 cggcgcgccg taccggctcg cctgttcacc ggaaaccgaa ggcgcgttgc gcgaagcggt
     2341 agcgcgcgta gatgcggaaa tgtcgaaagt gcgaagcgca agcagcgttc gtggcacgga
     2401 tcggatcgcg gtgatggcgg cgttgtcgct ggcgtcggaa ttgctcaagc tccaaaacag
     2461 cgtgcgccac ggcgaagcat tcccggccga agaaattcgt cgcaccatgc atcaaatgaa
     2521 cgagcaactg ggcgtcgtga tttcacaata cgaagcactg tagttgccga agcagttgct
     2581 gcgccggtaa gtgtgtgcag tggctgaaat ttgctttaat gcttgacgcg caagctaatg
     2641 tgcgaatgtt attttgttgc cggagtgctg gcacgatttt gcattttcat gtcatgtttt
     2701 gcagcattta acaaattcat ccgtcgccat aaagttttcc gggatcattg ctgcatcgtc
     2761 tcgttgattg gtgtaaagtg attgctccct gcctggtttg ccaaggtcat atattccttg
     2821 aaccaatgcc attgtgcacg gttgtgggac cttgtagcac tggcgagcgc gtcactctgt
     2881 ctgatgagcc caaggtgctg cttactgcga ccaatcttga acccaggttc aggatgccgg
     2941 cctagcggct tgggcgggga cccttttaaa cagcatgcgt atttgtttgc acatgctggc
     3001 aagcggttga gttgactgaa tggactaacg gcgctggagc ttctcccgcg ccgttttctt
     3061 ttgcatcgtg aatcctgcat cgtgcatgct tctttgcaca gcacctttct ccatggaaga
     3121 cattcatgca ctactggctg atgaagtcgg aaccgaacga agcgagcatc gaccatctcg
     3181 ctcacgctcc gaaaaaaacc ctgccctgga ccggcgtgcg taattaccag gcacgcaact
     3241 tcatgcgcga cggcatgcag gttggtgacg gtgtgctgtt ctatcactcg agctgtccgc
     3301 aaccgggaat cgcaggcatt gcgaaggtgt cgtcggccgc gtatcccgat cccacccaat
     3361 tcgattccac cagccactac tacgatccca agtcatcggc ggaaaagccg cgctggttac
     3421 tcgtcgacgt tcacttcgtg aagaagaccc cgcttattcc cctcgccacg ctacgcgatc
     3481 atgccgagct tgccgacatg caagtgctcg cccgaggcaa ccggctttca atcacgccgg
//
LOCUS       DATGBK010001680         1586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_158746, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001680 DATGBK010000000
VERSION     DATGBK010001680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158746"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..160)
                     /locus_tag="VKJ77_23590"
     CDS             complement(<1..160)
                     /locus_tag="VKJ77_23590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011483208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HMC48321.1"
                     /translation="MADVDVTRPSGIPVHKRDITGVVLAGGRGSRMGGVDKGLQPLNL
                     EPLALHALR"
     gene            complement(162..1271)
                     /gene="moaA"
                     /locus_tag="VKJ77_23595"
     CDS             complement(162..1271)
                     /gene="moaA"
                     /locus_tag="VKJ77_23595"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HMC48322.1"
                     /translation="MSRRIIPVTDVSAIPDFSGIAATPRGLLTDRRSRELRDLRISVT
                     DRCNFRCVYCMPREVFDKNYEFLPHSALLSFEEIERLARLFVEHGVEKIRLTGGEPLL
                     RKNIEFLIERLALLRTPEGRPLDITLTTNGSILARKARSLKDAGLSRVTVSLDALDDA
                     LFRRMNDADFAVADVLEGIEAAHAAGLAPLKVNMVVKRGTNDAEIVPMARHFKGSGTV
                     LRFIEYMDVGASNGWNMSEVLPSADVVARIAEHFPLRPLEAHNDAETAQRWGYQDGSG
                     EIGVISSVTRAFCSSCTRARLSTEGKLYLCLFATSGHDLRALIRSGASDATVATAIAR
                     IWEARTDRYSELRGSNALPAADPDAPRVEMSYIGG"
BASE COUNT          286 a          504 c          497 g          299 t
ORIGIN      
        1 cccgtagcgc atggagcgca agcggttcaa ggttgagcgg ctgcaggcct ttatcgacac
       61 cgcccatgcg cgatccgcgc ccacccgcca gcaccacgcc ggtgatgtcg cgcttgtgca
      121 caggaatgcc gctcgggcga gttacatcga catcggccat gtcagccgcc gatataggac
      181 atttcgacgc gcggtgcgtc cgggtcggca gcgggcaacg cattgctgcc gcgcagttcc
      241 gaatagcggt cggtgcgcgc ttcccagatc cgggcgatgg ctgtcgcgac cgtagcgtcg
      301 ctcgcgccgc tgcggatcag cgcgcgcaag tcgtggccgg atgtggcgaa caggcacaag
      361 tacagcttgc cttcggtaga gaggcgggca cgcgtgcaag agctgcagaa cgcgcgcgtc
      421 acgctcgaaa tgacgccgat ctcaccgctg ccgtcctggt aaccccagcg ttgcgcggtc
      481 tcggcgtcgt tgtgggcttc gagcggccgc agcggaaaat gctcggcaat gcgtgcgacc
      541 acgtccgccg acggcaacac ttcgctcatg ttccagccgt tcgacgcacc cacatccata
      601 tattcgataa agcgcagcac cgtgccgctg cctttgaaat ggcgcgccat cggcacgatt
      661 tcggcgtcgt tcgtgccgcg cttgacgacc atgttgacct tcagcggcgc caggccggcg
      721 gcgtgcgcgg cctcaatgcc ttcgagcacg tcggcgacgg cgaaatccgc gtcgttcatg
      781 cggcgaaaca acgcatcgtc gagcgcatcc aggctcaccg ttacccgcga caaccccgcg
      841 tctttcagcg agcgcgcctt gcgggcgagg atcgacccgt tggtggtaag cgtgatatcg
      901 agcggacggc cttccggcgt gcgcagcagc gccaggcgtt caatcaggaa ttcgatgttc
      961 ttgcgcagca gcggttcgcc gccggtcagc cggatttttt ccacgccgtg ctcgacgaac
     1021 aacctcgcca gccgctcgat ttcctcgaac gacagcagag cgctatgcgg cagaaattcg
     1081 tagtttttat cgaaaacttc gcgcggcatg cagtacacgc agcgaaaatt gcaacgatcg
     1141 gtcaccgata tgcgcagatc gcgcaactca cgcgaccgcc ggtcggtgag cagcccgcgc
     1201 ggcgtcgctg cgatgccgga gaaatccggg atcgcgctga catcggtgac gggaatgatg
     1261 cgtcgggaca tgatcgtttt atttctcgtg cagcggcggc ggtagggcgg ctgctatgaa
     1321 catcgaacaa ttcattttag cggaagggcg attttaaagc gtctcgccat cgccttttca
     1381 cgggcatttg tcgcgggtcc aataaaaaaa gcgccaccga ccgaagtcat gtggcgcttt
     1441 tcgaaacgtc agacgcgttt aatgtgcgtc tttacccgtt tccacttgct gcataggcgc
     1501 ggcgtccagc gccggcaggc gcttgcgttc gcgcacgacc cgcttcggcg cttcagcctg
     1561 cgctgcggct tcgcgggctg cggcga
//
LOCUS       DATGBK010001681         1934 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_320472, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001681 DATGBK010000000
VERSION     DATGBK010001681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320472"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(370..1125)
                     /locus_tag="VKJ77_23600"
     CDS             complement(370..1125)
                     /locus_tag="VKJ77_23600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family protein"
                     /protein_id="HMC48323.1"
                     /translation="MKIRFWPALIILIVMAVTVRLGFWQRDRAHQKEQLNAQIVAFEN
                     APVQHVGATPIALKDINFHRVQARGTFLPDQVVYLDNRPYNDQPGFYVVMPLKLDGGG
                     VVLVNRGWLPRNLADRTGIEPYDTPSGVVEIEGVARANASQAFELGHGGSAAQQKIRQ
                     NLDVAAYAAETGLPLQPFVIQQLNNSGDKLVRDWPAPTMGVDTNYGYMLQWWGMALAA
                     LGFGLYAARRAAKNEGKKDGNGQSAPETLDGKV"
     gene            1225..1434
                     /locus_tag="VKJ77_23605"
     CDS             1225..1434
                     /locus_tag="VKJ77_23605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin transmembrane helix small protein"
                     /protein_id="HMC48324.1"
                     /translation="MHIFVAIAFILIIASLGSALYFMMTDKGKTKRMVWSLAMRVGLS
                     ISLFLFILLAHWMGWIQPTGIPLGR"
     gene            complement(1764..>1934)
                     /locus_tag="VKJ77_23610"
     CDS             complement(1764..>1934)
                     /locus_tag="VKJ77_23610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HMC48325.1"
                     /translation="HGFHVFLGGTMLTVVLVRVIRGHFTAEHHFAFEGAAWYWHFVDV
                     VWLGLYVVVYWL"
BASE COUNT          389 a          627 c          526 g          392 t
ORIGIN      
        1 gcggcgcaaa cggccgcgag caggatcagc atccagcggc ccttgttcca tgagccgggc
       61 gtgcgtccag gcgtgcgttc ctgctgctgg gcgcgcgcct tgtgaatggc agacgcggac
      121 ggtcggggag tttgcatgga caaaatgttg cctctattcg tttacggcat cgcgcacttc
      181 tttcacgcga tgcgttcatt caggcgcggg tcgcctgctt cggggctgcc ggccggaccc
      241 ggtctcaagc cgagcgcgca ccagctgtca cttccggtta aacccgcctg acacggacac
      301 acggtagtcc gttccaggcc caatccgtcg tgctcgaggt tattaggttt atcagatcta
      361 acctttcgat caaaccttcc catccagcgt ttccggcgcg ctctgcccgt tgccgtcctt
      421 cttcccttca ttcttcgccg cgcgcctcgc cgcgtacagc ccgaacccga gcgcggcgag
      481 cgccatgccc caccactgca gcatatagcc gtagttggta tccacgccca tggtcggcgc
      541 cggccagtca cgcaccagct tgtcaccgct gttgttcaat tgctggatca caaacggttg
      601 cagcggcaaa ccggtttcgg cggcgtacgc agcgacatcg agattctgcc gaattttttg
      661 ctgcgccgcg gagccgccgt gccctaattc gaaagcctgc gacgcatttg cccgcgcaac
      721 gccttcaatc tcaacaacgc ctgacggcgt gtcatacggc tcaatgcccg tgcggtcggc
      781 cagattacgt ggcaaccagc cacgattcac cagcacgacc ccgccgccat caagcttgag
      841 cggcatcacg acgtaaaacc ccggctggtc gttatagggc cggttgtcga gataaacgac
      901 ctggtcgggc aagaacgtgc cacgcgcctg cacgcgatga aaattgatgt ccttcagcgc
      961 aattggcgtc gcgcccacgt gctgcacggg cgcgttctca aacgcgacaa tctgtgcgtt
     1021 caactgctct ttctgatgcg cgcggtcccg ctgccagaag ccgagacgca cagtaaccgc
     1081 catgacgatc aagatgatca gcgccggcca aaaacggatt ttcataccgc gcttccacgg
     1141 gcgaaagcct gaacgctcac gcggcacgtt acctgcggtg cgataatcga aggatcgaac
     1201 ttcttaggcc aactggctgt tttcatgcac atattcgttg ccattgcatt cattctcatc
     1261 atcgcgagcc tgggttcggc gctgtacttc atgatgaccg acaagggcaa gaccaagcgt
     1321 atggtgtggt cgctcgccat gcgggtcggg ctgtcgatct cgctgttcct cttcatcctg
     1381 ctcgcacact ggatgggctg gattcagccc accggaattc cgctcggacg ctgagtaacg
     1441 tcttaggtta cgcgtcaagt tacgcgtggg ttgggcacac cggcagcgcg aaggttcgcc
     1501 ctggatcgcg gaatactagc gggccgttgc gctcatcgct gcgacaaaac cgcgcagcaa
     1561 atttcttcct caacaatccg ccaagccgcg ttcaaaaaca aaacgccgcc cgagtcaggt
     1621 cgaggcggcg ctttgcaaag catctttttc aatcgacttc aggccaatcc actttgtttc
     1681 aatccaattc agaccgtcct gccagaccgg acgcgggtcg attaatccac cggatccgcc
     1741 cgggctaaac actgtctaaa cacttacagc cagtacacga ccacgtacag tccgagccac
     1801 accacgtcca cgaagtgcca gtaccatgca gccccttcaa acgcgaagtg atgctccgct
     1861 gtgaagtgcc cgcggatcac acgcacgagg acgacggtga gcatcgtgcc gccgagaaac
     1921 acgtggaaac cgtg
//
LOCUS       DATGBK010001682         1616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_320478, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001682 DATGBK010000000
VERSION     DATGBK010001682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320478"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..672
                     /locus_tag="VKJ77_23615"
     CDS             <1..672
                     /locus_tag="VKJ77_23615"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HMC48326.1"
                     /translation="PPVFDDLPWLDDVVPQSLAVSETIDDTAADIATLDWDTLAARVA
                     VCERCRLCERRTNSVFGVGDRDADWMLIGEAPGENEDKLGEPFVGQAGKLLDSMLHAV
                     ALSREDNVFIANVIKCRPPGNRNPELDEVARCEPYLKRQVELVKPKLIVALGRFAAQS
                     LLKTEASIASLRGRVHDYQGVPVIVTYHPAYLLRSLPDKAKAWADLCLAQATYRKSLQ
                     AADGA"
     gene            669..>1616
                     /locus_tag="VKJ77_23620"
     CDS             669..>1616
                     /locus_tag="VKJ77_23620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010115965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1853 family protein"
                     /protein_id="HMC48327.1"
                     /translation="MTAADEITSFHDPAVRDLAWLLFSPDLLSASRAGAPLAHPAPTA
                     TERQTTLAWLAALDRDPAALHAQVHKPSLTRLGFYAEALLEYFLTHGPHARLIAANIP
                     LRTAERTLGEVDFLLRDVRGERLHWELAVKFYLHIGEGNGAATLAHYVGPNLQDRFDL
                     KHARLLNHQLGLSARDEFASLGFKGPWRAELFVKGRLFYRDDGLGRESNPPPELARDH
                     LRGWWKTASEWRDSKGDELFASLPRLGWMAERTLSAQEGDALVEQTAVLSERVASLSS
                     PIMVARYERCHFPTGEIWREHSRGFIVPDEWPERAADFAG"
BASE COUNT          279 a          476 c          531 g          330 t
ORIGIN      
        1 ccaccagtct tcgatgacct cccttggctc gacgatgtgg tgccgcaatc acttgctgtt
       61 tcggaaacca tcgatgacac cgccgccgat atcgcgaccc tcgactggga cacgctggcc
      121 gctcgcgtcg ccgtgtgcga acgctgccgt ttgtgcgagc gtcgcacgaa ctcggtgttc
      181 ggtgtgggtg accgggacgc ggactggatg ctgatcggcg aagcgcccgg tgagaacgag
      241 gacaagctgg gcgagccgtt cgtcggccag gcgggcaagt tgctcgacag catgctgcac
      301 gcggtggcgt tatcgcgtga ggacaacgtg ttcattgcaa acgtgatcaa gtgccgcccg
      361 cctggtaacc gcaatccgga actcgatgaa gtcgcgcgct gcgagcccta tttgaagcgg
      421 caggtcgagc tggtgaaacc caagctgatt gttgcgcttg gacggtttgc cgcgcagagc
      481 ctgctcaaga cggaggcgag cattgcgtcg ttgcggggac gggtacacga ctatcaggga
      541 gtgccggtta ttgtcactta tcacccggcc tacttgttgc gcagtctccc cgataaagcc
      601 aaggcatggg ccgatctgtg tctcgcccag gctacttacc gcaagtcgct gcaggcggca
      661 gacggcgcgt gacggccgcg gacgagatca cgtcattcca cgatcccgcc gtccgggatc
      721 tcgcgtggct gctgttctcc ccggacttgc tgagtgcttc gcgcgctggc gcgccgctgg
      781 cgcacccggc cccaaccgcg acagagcgcc aaaccacgct ggcttggctc gccgcgctcg
      841 atcgcgaccc cgcagctctt catgcacagg ttcacaaacc gtcgctgacg cggctcggtt
      901 tttacgccga agcgttgctc gaatacttcc tgacgcacgg tccgcacgcg cgactgattg
      961 cagcgaacat cccgttgcgc acggcggaac gtacgctcgg cgaagtcgat ttcttactgc
     1021 gggacgtgcg tggcgagcgg ttgcactggg aactcgcggt gaagttttat ctgcacatcg
     1081 gcgagggtaa cggggctgct acgctggctc actatgttgg tccgaatctg caggatcgct
     1141 tcgacctgaa acacgcacgg ctcttgaacc atcaactggg tttgagtgca cgcgatgagt
     1201 tcgcatcgct cggcttcaag gggccgtggc gcgccgagtt gttcgtcaaa gggcgcttgt
     1261 tttatcgcga tgacggtctg ggccgcgagt cgaatccgcc gcctgaactt gcccgcgatc
     1321 atctgcgagg gtggtggaaa acggcgtcgg agtggcggga ttcgaaggga gacgaactat
     1381 ttgcttcgtt gcccagattg ggatggatgg cagaacgaac gttatcggcg caagagggtg
     1441 atgcgctggt tgagcagacg gcggtgttgt ctgagcgcgt tgcatcgctg tcgtcgccga
     1501 tcatggtcgc gcgctatgaa cgttgccact tcccgaccgg cgaaatctgg cgcgagcatt
     1561 cgcgcggttt tatcgtgccc gatgaatggc cggagcgcgc cgctgacttt gcgggt
//
LOCUS       DATGBK010001683         1624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_205252, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001683 DATGBK010000000
VERSION     DATGBK010001683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205252"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1624)
                     /locus_tag="VKJ77_23625"
     CDS             complement(<1..>1624)
                     /locus_tag="VKJ77_23625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC48328.1"
                     /translation="VYTTPNEHHNPMEPHATLARWDGPNLTLYDATQGVSGARGAVAK
                     TLGIPEANVRVLCPFVGGGFGCKGSAWSHVVLAAMAAKQTGRPVRLVLERPQMFGMVG
                     NRPFTDQHIQISARDDGTLTGMRHDVISSTSTFEDWNESSAIVTRMLYAVPNQATTHK
                     LVKLDVGTPTFMRAPGETSGSFALESAMDEMAYELNMDPLAFRLKNYAEMEPQEKRPW
                     SEKSLRECYQIGADKFGWSRRNPKPRSMRDGNTLIGLGMATATYPANRSEASAIARIL
                     PDGTAMVASGTQDLGTGTYTVMTQVAADALGFPMDKVEFALGDSSLPHAPVSGGSQSV
                     ASVSPAVREAALQARAKLIAMAIADSASPLSGGSIDDVTVNNGWVISRADPSKRDPAA
                     AVIARNGGKPIEAMATTKPGDEKQQFAFHSFGAVFTEVHVDADLGTIRVPRIVGVYDV
                     GSLLNEKTAHSQLMGGLVWGIGSALTEKSELDARYGRYTNANLAEYHVPVNADIGLLD
                     ITLLGKPDPHINSLGARGIGEIGITGVAGSIAN"
BASE COUNT          287 a          532 c          487 g          318 t
ORIGIN      
        1 attcgcaatc gatccggcta cccccgtaat gccgatttcg ccaatccccc gcgcgcccag
       61 cgagttgata tgcggatcag gtttgcccag caaggtgatg tcgagcaaac cgatatcggc
      121 gttcaccggc acgtgatatt cggccaggtt ggcgttggtg tatcggccat atcgcgcatc
      181 gagttcactc ttctccgtca acgccgagcc gatgccccac acgaggccgc ccatcaactg
      241 gctatgagcg gtcttttcgt tgagcaggct gccgacgtca tacaccccca caatgcgcgg
      301 cacgcggatc gtgccgagat cggcatcgac gtgaacttcc gtgaacaccg cgccaaacga
      361 gtgaaacgcg aactgctgtt tctcatcgcc gggcttggtg gtcgccatcg cttcaatcgg
      421 cttgccgccg ttgcgcgcga tcaccgcggc ggccggatcg cgcttcgaag ggtcagcgcg
      481 gctgatgacc cagccgttgt tgacggtgac atcatcgatg gagcccccgc ttagcggcga
      541 cgccgaatcc gctatcgcca tggcaatcaa cttggcgcgt gcctgcaacg ccgcttcacg
      601 caccgcaggc gacacgctcg ccaccgactg cgaaccgccc gacaccggtg cgtgcggcag
      661 cgacgaatcg ccgagtgcga actcgacctt atccatcgga aagcctaatg cgtcggcggc
      721 cacttgcgtc atcacggtat aagtgccggt gccgagatcc tgcgtgcccg atgcgaccat
      781 cgccgtcccg tcaggcaaga tgcgcgcaat ggcggatgcc tcactgcggt tcgccggata
      841 ggttgccgtt gccatgccaa gaccgatcag cgtgttgccg tcgcgcatgg accgtggttt
      901 cggattgcgc cgcgaccagc cgaatttatc ggcgccaatc tgataacact ctcgcaacga
      961 cttctccgac cacggcctct tttcctgcgg ctccatctcg gcatagttct tcaacctgaa
     1021 cgcgagcggg tccatgttca actcgtacgc catttcatcc atcgcggatt cgagcgcaaa
     1081 cgagccgctc gtttcgccgg gcgcgcgcat gaacgtcggt gtgccgacat cgagtttcac
     1141 cagcttgtgc gtggtcgcct ggttcggcac ggcatacagc atgcgcgtca caatggccga
     1201 gctttcgttc cagtcttcaa acgtcgatgt gctcgagatc acgtcatggc gcatgccggt
     1261 gagcgtgccg tcgtcacggg ccgagatctg gatatgctga tccgtgaacg gccggttgcc
     1321 gaccatgccg aacatttgtg ggcgttcgag cacgagccga accggccggc cggtttgctt
     1381 cgcggccatg gcggcgagca cgacatgcga ccacgctgag cccttgcatc caaaaccgcc
     1441 gcccacgaac gggcagagca cacgcacgtt cgcctccggg atgccgagcg ttttcgccac
     1501 cgcgccgcgg gcgccggaga cgccttgcgt tgcatcgtag agggtgaggt ttgggccatc
     1561 ccagcgagca agcgtggcgt gcggctccat cggattgtgg tgttcgttcg gcgtggtgta
     1621 gacc
//
LOCUS       DATGBK010001684         5058 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_275111, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001684 DATGBK010000000
VERSION     DATGBK010001684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5058
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275111"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1513)
                     /locus_tag="VKJ77_23630"
     CDS             complement(<1..1513)
                     /locus_tag="VKJ77_23630"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007748671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC48329.1"
                     /translation="MSTAPLLEVVDIHKRFTGVYALRGVSLSFQRGQIYHLLGENGCG
                     KSTLIKIISGAQPPDQGELVIEGVRHARLAPLEALSAGIETVYQDLSLLPNMSVAENV
                     GLTSELAAHAGRLARTFDRRALAKTAARALEAVGLPGDADFQATLVEQLPLATRQLVA
                     IARVIASEAKFVIMDEPTTSLTQKEVDNLIAVLAKLRADGVAVLFVSHKLDECYAIGG
                     EVIVLRDGQKMAQGPIENYTKAQIGELMTGKQLSNERYRQAEVMEGHEIVLDVKGLSR
                     SRQFADVTFSLHRGEILGVTGLLDSGRNELARALAGVAPADSGTVTLDGSIVRLKTPS
                     DAKWQRIGYVPEDRLNEGLFLDKSIRDNVITAMISSLRDRFGQVDRKRARELAERTVK
                     ELQIATPDVDKPVQSLSGGNQQRVLIGRWLAIDPRVLILHGPTVGVDVGSKDIIYRIM
                     QRLAEQGIGIILISDDLPELLQNCDRILMMKKGRVSNEYRAGQLTEADLYHALL"
     gene            complement(1595..2599)
                     /locus_tag="VKJ77_23635"
     CDS             complement(1595..2599)
                     /locus_tag="VKJ77_23635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autoinducer 2 ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC48330.1"
                     /translation="MKLNRIAIALTAVTLAAGAIAVAQAATDQTIVTVVKVTGINWFN
                     RMDEGVKEFAKANPGVNAYQTGPGQADAAQQLKIIEDLIAKKVTAIAVVPYDPPTLEP
                     ALKKAMDRGIKVVTHEADNEKNTMVDIEAFDNTAYGAGLNERLAKCMGDQGKWAVLVG
                     SLGSRSQVQWADGGIGNAKQKYPKMDLVEPKLETNNDGERAYQVAKEVLRKHPDLTGF
                     QGSSSLDVIGIGRAVEEAGKIGKICVYGTGLPTEAGKFLESGAINGIAFWDPKLAGIA
                     MNKIAKMLIDGKTVENGADLGLVGYNKVTVTKGPGKGIIVRGTGWVDVDKTNYKQYPF
                     "
     gene            complement(2688..3722)
                     /locus_tag="VKJ77_23640"
     CDS             complement(2688..3722)
                     /locus_tag="VKJ77_23640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008348180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48331.1"
                     /translation="MNASKWLADRQLNFLVAVNVLVVLVATALSHGQFVDIDNLQSMG
                     GQLPELGLLALGIMLSMVSGNGGIDLSGVALANLSGMVAAQLLPMLVSADNSPSLYTA
                     VFCAITVTLGALGGLMNGVIIARLKLTPILCTLGTSLLFTGIAVVLSNGASVRVEYVD
                     ALSDIGNGTFLQVPVSLWIFVVTVLLLGWVLKRTPFGLRLYLMGTNPKAAFYAGIPRD
                     RMLILTYGMCGVLASLAGLISASHTSSAKWDYGNSYLLIAILIAVMGGVNPAGGYGRI
                     VCVFLAATVLQFLSSLFNLLGISQFFGDCAWGFLLLASLALAGGERVRAIFGLGGAAP
                     VSKVPKPPAA"
     gene            complement(3738..4694)
                     /gene="rbsK"
                     /locus_tag="VKJ77_23645"
     CDS             complement(3738..4694)
                     /gene="rbsK"
                     /locus_tag="VKJ77_23645"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008348182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004747 - ribokinase activity [Evidence
                     IEA];
                     GO_process: GO:0019303 - D-ribose catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HMC48332.1"
                     /translation="MNRSVVILGIYVTDLTFRAERMPLLGETIAGSAFAMGPGGKGSN
                     QAVAAARAGADVIFCTRLGADAFGDIARSTWAAEGITARAITTDGVATGAAHIFVDDA
                     TGGNAIIVAAGAAGRLCSKDVEAIEADIATAAVFVTQLEQPVPAARRGLELARNHGVT
                     TVFNPAPALPLDDDIFPLCDYITPNETEATALTGIAIASVDDARRAADVLLSKGVRAV
                     IVTLGEAGALLHTPEQSVLVPAFNCGRVVETAGAGDGFTGGFAAALARGETPLNAVRF
                     GCALASLSVTRPGTAPSMPTLAEIEAVLGVPVQSGSVSAHHS"
     gene            complement(4691..>5058)
                     /locus_tag="VKJ77_23650"
     CDS             complement(4691..>5058)
                     /locus_tag="VKJ77_23650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017775422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_function: GO:0048029 - monosaccharide binding [Evidence
                     IEA];
                     GO_process: GO:0005996 - monosaccharide metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RbsD/FucU domain-containing protein"
                     /protein_id="HMC48333.1"
                     /translation="TVLGHVLRLDGVNAPRAIRAVLSVLPLDSFVDHPAERMEVVGDA
                     NALPAVQREAQTEVDAAEGRATPFASIERFAFYERAKQAYCVIATGEARGYGCFIFKK
                     GVNLAPDAPAAASDSESTR"
BASE COUNT         1003 a         1657 c         1439 g          959 t
ORIGIN      
        1 aaagtaaagc gtgataaaga tcggcttcag tcaattgccc cgcacgatat tcgttcgaga
       61 cacgcccttt cttcatcatc aggattcggt cgcagttctg cagcaactcg ggcaagtcat
      121 cgctgatcaa gatgatgccg atgccctgct ccgccaagcg ctgcatgatg cgataaataa
      181 tgtccttcga tcccacatcc acgcccaccg ttgggccgtg caggatcaac acgcgtgggt
      241 caatggccag ccatcggccg atcaacacgc gttgctggtt gccacctgat agcgactgaa
      301 ccggtttatc gacatcaggc gtcgcgatct gcaactcctt cacggtgcgc tcggcaagct
      361 cgcgcgcgcg cttccggtca acctgtccaa agcggtcgcg caaactcgag atcatcgcgg
      421 tgatcacgtt gtcgcgaatg gatttatcga ggaaaagccc ttcgttcaag cggtcttccg
      481 gcacatagcc tatgcgttgc cacttcgcat cggacggtgt tttaagccgc acgatggaac
      541 catccagcgt caccgtgccg ctatccgcag gcgcgacacc tgccaaagct cgcgccaatt
      601 cgttgcgccc cgaatccagc agacccgtca cgccaagaat ctctccgcga tgcagcgaga
      661 acgtgacatc ggcgaactgg cgcgaccgcg ataacccctt cacgtccagc acgatctcgt
      721 ggccttccat gacttcagcc tgccgatatc gctcgttcga taactgcttg cccgtcatca
      781 actcgccaat ctgcgccttc gtgtaattct caatcggtcc ctgcgccatc ttctggccat
      841 cgcgcagcac aatcacctca ccgccgatcg catagcattc atcgagcttg tgactcacga
      901 acagcacggc gacgccatcg gcgcgcagct tcgccagcac tgcgatcagg ttgtcgactt
      961 ccttttgcgt gagcgacgtg gtcggctcat ccatgatgac gaacttcgcc tcgctcgcga
     1021 tcacacgcgc gatagccacg agttgccgcg tcgccaacgg caattgctcg accagcgtgg
     1081 cctggaaatc cgcatcgcca ggcaagccca cggcttccaa agcacgcgcc gccgttttgg
     1141 ccagagcgcg gcgatcgaag gtccgcgcaa gccgccccgc gtgggcagcc agctccgacg
     1201 tcaaccccac attctccgca acactcatgt tgggcagcag cgaaaggtcc tgatacaccg
     1261 tttcgatacc cgccgacaac gcctccagcg gtgcaagccg cgcatgcctg acgccctcga
     1321 tcacaagctc gccctgatcg ggcggctgcg caccggagat gatcttgatc agcgtgctct
     1381 tgccgcaacc gttctcgccg agcaggtgat aaatctgccc gcgctggaac gaaaggctca
     1441 cgccacgcag cgcatacacg ccggtaaagc gcttgtggat atcgacgact tcgagaagcg
     1501 gcgctgtact catcattgaa ccttctaccc tttcaacttc ctgaagacag cgcgcacgga
     1561 gaccgtgcgc gctttgctgc tttcgtgaag acaatcagaa cggatactgc ttgtagttgg
     1621 tcttgtcgac gtcgacccag ccggtgccgc gcacgataat gcccttgccc ggacccttgg
     1681 tgaccgtgac cttgttataa ccaaccagac ccaggtccgc accgttctcc accgtcttgc
     1741 catcgatcag cattttcgca atcttgttca tcgcgatacc agcgagcttc ggatcccaga
     1801 acgcaatgcc gttgatcgcg ccgctctcca ggaacttgcc ggcttccgtc ggcaggccgg
     1861 tgccgtacac gcagatcttg ccaatcttgc cggcctcttc caccgcgcgc ccgatgccga
     1921 tcacgtccag agacgacgac ccttggaaac ccgtcaggtc cggatgcttg cgcagcactt
     1981 cctttgcaac ctgataggca cgttcgccat cgttattggt ttcgagtttc ggttcgacca
     2041 gatccatctt cgggtacttc tgcttcgcat tgccgatacc gccatcggcc cactgaacct
     2101 gcgagcggct accgagcgag ccgaccagca ccgcccattt gccctgatcg cccatgcact
     2161 tcgcaagccg ctcgttcagg cctgcgccat acgcggtgtt gtcgaaggct tcgatgtcga
     2221 ccatcgtgtt cttctcgttg tcagcttcat gcgtgacgac cttgataccg cgatccatcg
     2281 ctttcttgag cgccggttcg agggtaggcg gatcgtaggg aacgaccgca attgccgtga
     2341 ctttcttcgc gatcaagtct tcgataatct tcagttgctg cgcagcgtcc gcctgccccg
     2401 gtccggtctg atacgcgttc acgcccgggt tggcctttgc gaattccttc acgccctcgt
     2461 ccatccggtt gaaccagttg atacccgtga ccttgaccac cgtgacgatg gtttgatcgg
     2521 tcgccgcctg cgcgacagca attgctccgg ccgccagcgt gacagcagta agcgcgatgg
     2581 cgattcgatt aagtttcatg cgttgtctcc gttatggttt gtctgtgctg cacatgaggt
     2641 gaagttttga agcccgggga aacttgttta tccgcgtgtt tatctgacta cgccgccggt
     2701 ggttttggca ccttcgaaac gggtgccgcg ccgcccaggc cgaagatcgc gcgcacgcgc
     2761 tctccacccg ccagagcaag tgatgcgagc agcaggaagc cccacgcaca gtcgccgaag
     2821 aactgcgaga tgcccagcag gttgaacaag ctcgacaaga actggagcac ggtcgctgcc
     2881 aggaaaacac agactatccg gccataaccg cccgccggat tcacgccgcc catcaccgcg
     2941 atcaggatgg cgatcagcaa gtacgagttg ccgtagtccc acttcgcgct ggacgtatgc
     3001 gatgcgctga tgagcccggc gagcgacgcg agcacaccgc acatgccgta cgtcaggatc
     3061 aacatgcggt cgcgcggaat gccggcgtag aacgcagctt tcggattcgt gcccatcagg
     3121 tagagccgca atccgaaggg cgtgcgcttc aacacccaac cgagcagcaa caccgtgacc
     3181 acgaaaatcc acagcgagac aggcacttgc aggaaggttc cgttgccgat gtcggagagg
     3241 gcatcgacgt attccacccg gaccgatgca ccgttgctca acaccacggc gataccagtg
     3301 aacagcagcg acgtcccgag cgtgcaaagg atcggcgtga gtttcaggcg cgcgataatc
     3361 acgccgttca tcagtccgcc gagggcgcca agcgtcacgg taatcgcgca gaacacggcg
     3421 gtatagagcg atggcgagtt atcggcggaa acgagcatgg gcagcagctg cgcggcgacc
     3481 atgcccgaga ggttcgcgag cgcgacaccc gacaagtcga taccgccgtt acccgacacc
     3541 atcgagagca tgatgccgag cgcgagcagg cccagttcgg gcaactggcc gcccatggac
     3601 tggaggttgt cgatatcgac aaactggcca tgcgacaacg cggtcgcgac caatacaacc
     3661 agcacgttta cggcaaccag gaagttcagt tgccggtcgg cgagccattt cgatgcgttc
     3721 atcgagcggt cctccgttca ggaatgatga gccgacacgc tgccggactg cacaggaacg
     3781 cccagcaccg cttcgatttc ggccagcgtt ggcatcgacg gtgcggtgcc gggacgcgtg
     3841 accgacaagc tcgccagcgc acagccgaaa cgcacggcgt tcaaaggggt ttcgccgcgt
     3901 gcaagcgccg cggcgaagcc gccggtgaag ccatcgcccg cgcctgcggt ctcgaccacg
     3961 cgaccgcaat tgaaggctgg caccagtacc gactgctcag gcgtatgcag caacgcaccc
     4021 gcttcaccca gcgtcacgat cacggcacgc acgccttttg aaagcaggac atcggcggca
     4081 cggcgggcgt cgtcgacgga cgcaatcgcg atacctgtca gcgctgtcgc ttcggtttcg
     4141 ttcggggtga tgtagtcgca gagcgggaag atgtcgtcgt cgagcggtag cgcgggcgcc
     4201 ggattgaaca ccgtcgtcac gccgtgatta cgcgcgagtt cgaggccgcg ccgtgcagct
     4261 ggaacgggtt gttcaagctg cgtgacaaac acggcggcgg tcgcaatatc ggcttcgatc
     4321 gcttcgacgt ctttggaaca caagcgtccg gccgcacccg ccgcgacgat gatcgcgttg
     4381 ccgcccgtgg catcgtcgac gaagatatgt gctgcgcctg ttgccacgcc atcggtcgtt
     4441 attgcccgcg ctgtgatgcc ttccgcggcc cacgtcgagc gtgcgatgtc gccgaatgca
     4501 tcggcgccaa gacgcgtgca gaagatcacg tcggcaccgg cgcgtgctgc cgccacagcc
     4561 tggttcgatc ctttaccgcc cggtcccatc gcaaacgccg atcccgcgat ggtctcgcca
     4621 agcagcggca tgcgctcggc gcggaacgtg agatccgtca cgtagatgcc gaggatgacg
     4681 acgctgcggt tcatcgcgtg ctctccgaat ctgaagcggc agccggggca tcgggcgcga
     4741 ggttcacgcc cttcttgaag atgaagcagc catagccgcg cgcctcgccg gttgcgatca
     4801 cgcaatacgc ttgcttggcg cgttcataaa acgcgaaccg ttcgatggaa gcaaagggcg
     4861 tcgcgcgccc ttcggcggca tccacttccg tttgcgcttc gcgctgcacg gcggggagcg
     4921 cgttggcgtc gccaacgact tccatgcgct cggccggatg atcaacgaaa ctatccagcg
     4981 gcaacactga caacaccgcg cggatcgcac gcggcgcatt cacgccgtcg agccgaagca
     5041 catggccaag caccgttt
//
LOCUS       DATGBK010001685         2102 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_181680, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001685 DATGBK010000000
VERSION     DATGBK010001685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181680"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..274)
                     /locus_tag="VKJ77_23655"
     CDS             complement(<1..274)
                     /locus_tag="VKJ77_23655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48334.1"
                     /translation="MHRLETAEAALRPTLGILETAGISVAMMAPTAAMALNGALAASA
                     GGTAVPLAFVLGFITILLVAFAFVTFARVYATPASVGEFNARGIGPL"
     gene            complement(283..1194)
                     /locus_tag="VKJ77_23660"
     CDS             complement(283..1194)
                     /locus_tag="VKJ77_23660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HMC48335.1"
                     /translation="MHLKRTQTHGVWDNSITPAVRIAPGDTITVELENASGGQLTATS
                     DVSALASLAFERINPVTGPIFVEGATPGDALVVEILELDVDTWGWTANIPGFGLLADR
                     FTEPALRMSRIANGTIELFTGMRLPSVPMIGTIGVAPAEAGAFSVIPPTRYGGNMDIR
                     HVGAGATLYLPVGVAGALLSLGDGHAAQGDGEVCGTAIETTAVATLRITIDKGRHLPT
                     PMLITDPRSQRTGRAFATTGIGPDLLSAARDATQAMIDEIVRRTTLSPIDAYLLASVA
                     GDLKISEVVDVPNWVVSLQLDATLLSR"
     gene            1304..1738
                     /locus_tag="VKJ77_23665"
     CDS             1304..1738
                     /locus_tag="VKJ77_23665"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC48336.1"
                     /translation="MQILIVDDSPSETRLIAAAIRSLADVEAIRFMSSEHALDWAAAS
                     GPIVAVVDFHMPQMDGLAFMQRLRALPGKSETPVILVTADADLGVRLRALEMGVNDFV
                     IKPYRAADIRARIFAVHDAYRLSLARTRQAALAQTNEAFASS"
     gene            1716..>2102
                     /locus_tag="VKJ77_23670"
     CDS             1716..>2102
                     /locus_tag="VKJ77_23670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48337.1"
                     /translation="MKLSRRADEMFRSPSRSFQFSKVLIAIGIVASALHFGDNAMEMG
                     TYPQPAWITPAGIVIGWTVAAALAVVALMRRSRDGIFATCATGFALVLISGHLHYYFG
                     SAMQMTAFGNATVAFEVVTGCALVISL"
BASE COUNT          406 a          609 c          646 g          441 t
ORIGIN      
        1 ccagcggccc gattccgcgc gcgttaaact caccaacgga tgcgggcgtc gcgtagacgc
       61 gtgcgaacgt aacaaacgca aatgcaacga gcagaatcgt gatgaaaccg agcacgaacg
      121 cgagcgggac ggcggtgccg cccgctgatg cggcgagtgc gccattgagc gccattgccg
      181 cggtgggcgc catcatcgca accgaaatgc ccgctgtttc aagaatgccc agagttgggc
      241 ggagtgcggc ttcggccgtt tcgaggcggt gcactgggta ttttatctcg acagcaaggt
      301 agcatcgagt tgcaacgaca cgacccaatt cggtacgtcg acgacctcgc taattttgag
      361 atcgccggca acgcttgcaa gtaaatatgc gtcgatcggc gatagcgttg tgcgccgcac
      421 gatttcatcg atcatcgctt gcgttgcatc gcgagcggcg gaaagcaagt cgggaccgat
      481 gccggtggtt gcgaatgcgc gcccggtcct ttgggaacgc ggatccgtga ttagcatcgg
      541 cgtcggcaga tgtcgccctt tgtcgatggt aatgcgtaag gtagcaaccg ctgttgtttc
      601 aatcgccgtt ccgcatacct cgccgtcacc ttgagcggca tggccatcgc ccagtgagag
      661 cagtgcgccg gcgacgccaa cgggcaagta cagcgtcgcg ccggcaccaa cgtgccgaat
      721 atccatgttg ccgccgtagc gcgtcggcgg aatgacggaa aacgcgcccg cttcggccgg
      781 cgcgacgccg atcgtgccga tcatcgggac gctcggtagc cgcatccccg tgaaaagctc
      841 gatcgtaccg ttcgcaatgc gcgacatccg caaggccggt tccgtgaagc gatcggctag
      901 caatccgaag ccgggaatgt ttgccgtcca accccatgtg tcgacatcaa gttcgagaat
      961 ttcaacgacc agcgcgtcac cgggcgtggc gccctcgacg aagatggggc cggtaaccgg
     1021 atttatgcgt tcgaacgcaa gcgacgcaag cgcgcttaca tccgaggttg cggtgagctg
     1081 gccgcccgat gcattttcaa gctcgacggt gatcgtgtca ccgggcgcaa tgcgaaccgc
     1141 tggggtgatc gagttgtccc agacaccgtg tgtctgcgtg cgtttgaggt gcatgcgcta
     1201 gctttcgaca gcggccatac gaagtccagg agccctgcgt gctaagaagt tgatctcgtc
     1261 gtgccgacac gaatcacagt gtacttcttg cgctaggggt gtcgtgcaga ttcttattgt
     1321 tgatgattcg cccagtgaaa cacgcctgat tgcggcggcc atccgcagcc tagccgacgt
     1381 cgaagcgatc cgtttcatgt cttcggaaca tgccttagac tgggcggccg caagcggacc
     1441 gattgttgcc gtcgtggact tccatatgcc gcaaatggac ggcttggcat ttatgcagcg
     1501 ccttcgcgcc ttgcccggca agtcggaaac gccggtcatt ctcgtaacgg ctgacgcgga
     1561 cttaggagtg cggctacgcg cgttggaaat gggcgtaaac gacttcgtga ttaaaccgta
     1621 tcgagcggca gatattcgcg cgcgcatttt tgccgtgcat gacgcgtatc gtctgagcct
     1681 cgcgcgcacg cggcaagctg cgctcgctca gacgaatgaa gctttcgcgt cgagctgacg
     1741 aaatgtttcg cagcccatcg cgctctttcc aattctcaaa ggttcttatt gccattggca
     1801 tcgtcgcaag cgctctgcac tttggcgaca atgcgatgga gatgggaacg tatccgcaac
     1861 cggcttggat cacccccgcg ggaattgtga ttgggtggac cgtggccgca gcattggccg
     1921 ttgttgcgct gatgcgacgt tcgcgcgacg gtatttttgc aacctgcgca acgggcttcg
     1981 cccttgtgct tattagcggc cacctgcact attattttgg gtcagctatg cagatgaccg
     2041 ccttcggaaa cgcgacggtt gccttcgagg tcgttaccgg ctgcgcgctc gtgatctcgc
     2101 ta
//
LOCUS       DATGBK010001686         1814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_89123, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001686 DATGBK010000000
VERSION     DATGBK010001686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89123"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VKJ77_23675"
     CDS             complement(<1..290)
                     /locus_tag="VKJ77_23675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009900008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC48338.1"
                     /translation="MNTVKNSQVAIVTGASRGIGAAVARRLANDGFAVVINYASSSKE
                     ADALVAELAAQGTKAIAIKADVANADEVRAMFDATEQQLGKIDVLVNNAGVL"
     gene            416..1312
                     /locus_tag="VKJ77_23680"
     CDS             416..1312
                     /locus_tag="VKJ77_23680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007839239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48339.1"
                     /translation="MDRFQEMQVFIRIAERSSFTQAADDLQIPRATVTNLLKRMEERL
                     GTRLLERTTRTVRLTHDGEAFYRRCVRLVADMEEAEGSFRNVAPKGLLRVNLQGTLAR
                     NFVVPALPEFIAQYPDIELQIGEDDRLVDLVREGIDCVLRAGTLQDSSMVGRRVALME
                     QVTVASPAYLEQFGEPDTLEALGAHRAVNYLSSGSGRALPMEFLVDGRVIEIQLPAVV
                     SVTGADLYTGSAVAGLGLVQVPRYRVMGELSAGTLKVVLDAFPPPPLPVSVLYPQNRQ
                     LSARVRVFAQWLREIFEAAVRV"
     gene            1492..>1814
                     /locus_tag="VKJ77_23685"
     CDS             1492..>1814
                     /locus_tag="VKJ77_23685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009893376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase domain-containing
                     protein"
                     /protein_id="HMC48340.1"
                     /translation="MTTILESLPVQQRVGIAFSGGLDTSAALHWMRLKGAVPFAYTAN
                     LGQPDEDDYDEIPRRAIQYGAEGARLIDCRAQLVAEGIAALQSGAFHISTAGVTYFNT
                     TPIGRA"
BASE COUNT          323 a          507 c          578 g          406 t
ORIGIN      
        1 ttcagcacgc cggcgttatt caccagcacg tcgatcttgc cgagttgctg ttcggttgcg
       61 tcgaacatgg cgcggacttc gtcggcgttc gctacatcgg ccttgattgc gatcgctttc
      121 gtgccctgtg cagcgagttc cgcgacgagc gcgtcggctt ctttcgaact cgatgcgtag
      181 ttgatgacta ccgcaaaacc gtcgttggcg agacggcgtg ccactgctgc gccaataccg
      241 cgcgatgcgc ccgtgacaat ggctacctgg ctgttcttga ctgtgttcat gattcgctcc
      301 gtgtaagtgg tgagtgcgtg gaatgaagta ttgatcattc acatcgattg ataattacgc
      361 gcgatttgtt aatatcgttc catttacttt aacaattacc gttcacgagt ggcctatgga
      421 ccggtttcag gaaatgcagg tgtttatccg tatcgccgag cggagcagct tcacgcaagc
      481 cgccgacgac ctgcagatac cgcgcgccac ggtcaccaac ctgctcaagc gcatggagga
      541 gcggctcgga acgcggctgc ttgagcgcac gacacgcacg gtgcgactca cgcacgacgg
      601 cgaggcgttc taccggcgct gcgtgcgact ggtcgcggac atggaagaag cggagggatc
      661 gttccgcaat gtcgcgccga agggtctgct gcgcgtgaat ttgcagggga cgctcgcccg
      721 gaatttcgtg gtgccggcgc tgccggagtt catcgcgcag tatccggaca tcgaattgca
      781 gattggcgag gacgaccggc tggtggatct ggtgcgcgag gggatcgact gcgtgcttcg
      841 ggcgggaacg ctccaggatt cgtcgatggt cggacgccgc gtcgcgctga tggagcaggt
      901 cacggtggcg agtcccgcct atctggagca gtttggagag ccggacacgc tcgaggcgct
      961 gggtgcgcat cgggcggtga attatttgtc gagtggatcg gggcgggcct tgcctatgga
     1021 atttttggtc gatggccgcg tgatcgagat tcagcttccc gcggtggtat cagtgaccgg
     1081 cgcggatttg tatacgggtt cagcggtggc gggattggga ctggtgcagg tgccgcggta
     1141 tcgggtgatg ggggaattat cggcggggac gctgaaggtc gtgcttgatg cttttccgcc
     1201 gcccccactg ccggtttcgg ttttgtatcc gcagaaccgg cagttatcgg cgagggtccg
     1261 ggtgtttgcg caatggctcc gggagatttt tgaagcggcg gtaagggttt gattttgcca
     1321 ttccttttcg tcaacgcgat tcgacagcgc cgtccaaatc ggtcaaaatc gctgcttaaa
     1381 ttttcaaatt ccgggtcgga acgatcgagc gactccatgg agccctcgac tcggaggcgc
     1441 aactccacct ctgctagctc atacgccact tcttaaccag acgattccat catgaccacc
     1501 attctcgaaa gccttcccgt ccagcagcgc gtcggaatcg cgttttccgg cggcctcgac
     1561 accagcgccg cgctgcattg gatgcgcctc aaaggtgccg taccgttcgc gtacaccgcc
     1621 aacctgggcc agcccgacga ggatgattac gatgaaattc cccgtcgagc aatacagtac
     1681 ggcgcagaag gcgcgcggct gattgactgc cgggcgcagc tcgttgccga gggcattgcg
     1741 gccttgcagt ctggcgcgtt ccatatttca accgccggcg tgacctattt caatacgacg
     1801 ccgatcggcc gcgc
//
LOCUS       DATGBK010001687         6890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_43522, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001687 DATGBK010000000
VERSION     DATGBK010001687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6890
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43522"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            327..722
                     /locus_tag="VKJ77_23690"
     CDS             327..722
                     /locus_tag="VKJ77_23690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015004522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC48341.1"
                     /translation="MSKFLHLMVRVESLDRSIAFYQDAFGMRESHRLDFDTFTLVYLR
                     DPETGAEIELTLNKGTTTPYTHGTGYGHVAFAVDDIEAFRDRLLSQGMQPGDLKSLTH
                     SGAIAARFFFITDPDGYKIEVLSREGHYV"
     gene            764..1405
                     /locus_tag="VKJ77_23695"
     CDS             764..1405
                     /locus_tag="VKJ77_23695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020204466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HMC48342.1"
                     /translation="MPKAIPIAIVVAETFTGSTGDAIPAVSSASSARVSRRHFLQGSV
                     VLTGLLVAGTPIALLAPSRAWAVELSHIDQNQADAIMVLARTLYPHKTLPDAVYALAV
                     KDVDAKATDPKTIDVIKTGVAKLNDAASGKWNDTASLSDAQRTAIVEANQTDPFVLLV
                     RGQCVTSLYNNEMAFAHFGYEGEAFSKGGYVYRGFNDLTWLPNPPADASPPVA"
     gene            1464..3032
                     /locus_tag="VKJ77_23700"
     CDS             1464..3032
                     /locus_tag="VKJ77_23700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004631260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HMC48343.1"
                     /translation="MAKFDYNDDSVVVIVGSGAGGGTLANELCQKGVKVVVLEAGKRQ
                     SSATFINDEWKSFGQLAWTDKRTTSGNWRVAKDFPELPAWICKTVGGTTTHWAGASLR
                     IHEHEFKARTTYGSIDQANLLDWPITLADLQPYYARAEDKMGVTRTNNIPGLPGNNNF
                     KIMYDGATKLGYKNCSTGHMAINSRPRAGRGRCMQLGFCFQGCKSGAKWSTLYTEIPA
                     GEATGRLELRPESHVMRIETNAAGKASSVVYMDADGKQQRQRARVVCVAGNSIETPRL
                     LLLSESSKHPDGLANSSGQVGRNYMRHTTGSVFGVFKEPVHFYRGTVMAGIITDEAEF
                     NPKRGFAGGYEMETISLGLPFAAAFFDPGAWGSDFTYYMDNYANTAGMWIVGEDMPRE
                     TNRVTLNHDVKDQVGLPVANVHYDDHPNDIAMRNHAFKQGEAIYAAAGAVRTLRTPPY
                     PSTHNLGTCRMSAKASDGVCNKHGQTFDVPNLFISDGSQFTTSAAENPTLTIVTLAIR
                     QSDYIADQMKRRNI"
     gene            3100..3423
                     /locus_tag="VKJ77_23705"
     CDS             3100..3423
                     /locus_tag="VKJ77_23705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HMC48344.1"
                     /translation="MCRIYAQTDPILYECRARSVRISGVTTTIRLENLFWQTLSELAA
                     DNDMTTNQLIAKLHEEITQHLGETTNFASFLRVTCLRYQGLRANASMDFRSHVAAATT
                     DKVAG"
     gene            3439..3792
                     /locus_tag="VKJ77_23710"
     CDS             3439..3792
                     /locus_tag="VKJ77_23710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003270677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HMC48345.1"
                     /translation="MTGRAWVTWSCGALLAAFVLPAQVAQAAPDGAAALSIVQKNNCL
                     SCHAVDSQVVGPAYREIAKKYHGDTTAPDKLFAKVRNGGAFVWGEVPMPANHSISDAD
                     LRTVIAWILAGAPDH"
     gene            3975..5408
                     /locus_tag="VKJ77_23715"
     CDS             3975..5408
                     /locus_tag="VKJ77_23715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011353995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48346.1"
                     /translation="MASVPIDATHGSPNSSADVGDTTFGVNARIDRLPATRSVWMLVF
                     LLSIGGWFEFYDLFFTAYVGPGLVKSGLYSTTTASFFGVSGLGAFVAASFAGLFIGTF
                     FLAGLADKYGRRTVFTVSLLWYSAATLIMALQTTAPAINLWRLIAGIGVGLELVTIDT
                     YVSELVPKHLRGRAFAFVHLVLYSAVPSVAFLAWWLVPQKPFGLDGWRWVVIIGALGA
                     IVVWAIRRRVPESPRWLAQQGRTAEAEKVLQAIEAKVAAQYGRALPTPVATVEPATTK
                     AAFREIWQPPYRKRAITMLVFNFFQAIGFYGFASWVPTLLVSKGVTITHSLLYSFVIA
                     ISNPFGPLIGMAIADRIERKTLIVLSAFGIVVFGSLFATQTSPVMLMILGVMITLCGT
                     LLSVGYHAYQTELFPTRLRARAVGFVYSISRLSAMFSGFMIAFALRHFEVTGVFALIS
                     VSMVMVMGAIGIFGPRTNNRNLDEISQ"
     gene            5424..6623
                     /locus_tag="VKJ77_23720"
     CDS             5424..6623
                     /locus_tag="VKJ77_23720"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009240455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC48347.1"
                     /translation="MTLPLTGVRVLDLSNVLAGPFCAYQLALLGAEVIKVEHPEGGDL
                     ARRLGADKDASARDMGASFVAVNAGKQSITLNLKDARGKEILRSLVKTADVLVENFRP
                     GVMTRLDLGYEALSEINPKLVYCAISGFGKDGEFSRRPAYDQIIQGISGVMSVTGDAD
                     SAPLRVGYPVSDTVGGLTAAFGICAALVDARANGRGRMLDVSMLEATLSTMGWVVSNY
                     LNAGVTPAPMGNENFTAAPSGTFKTGDGLLNIAANETKQFVSLCRLIGRPDLSDDPRF
                     SERNTRKVNRAALKAEIEAALAKDSAMNWDAKFTEAGVPAGRVMSVPEILAHPHLVSR
                     EFVREFNGDDPTTRQRVTRAGFRFSDADTAPATPAPTLSANTREHLATLGFDDIQIDE
                     LRAEGVI"
     gene            6626..>6890
                     /locus_tag="VKJ77_23725"
     CDS             6626..>6890
                     /locus_tag="VKJ77_23725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012425915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HMC48348.1"
                     /translation="MTQAFDAATLAADYWSTSIIDIHPGSINVRGFPIQELIGAVSFP
                     QMIWLMLRGELPDKAQASLFEAALVASVDHGPHAPSIAISRMAT"
BASE COUNT         1387 a         2062 c         2059 g         1382 t
ORIGIN      
        1 ctttgttctt ctttattcca ccggttgctg ccgtgctttc gtcgttgtta ttgaatgaag
       61 tcatgccacc gctggcatgg ggcgcgatgg tatttgcggt ggctggcgta gcgctcgcca
      121 cctggtcgac gtctggtgtg aaaccgcgaa aatcgtgaca acaaggagac cgttggccca
      181 aactcgaaac ccgtccccca gcgcgagcga cacaaccgtc ctactaggtg tttaacccga
      241 gcaaactccc ccgcggtaat aacccgctat taccctcttt tctgtcaacg ttgcatactg
      301 aagcgacgct atgacacgag tctcgcatgt ccaaattcct tcacctcatg gttcgcgttg
      361 aatcgctgga tcgctccatt gcgttctatc aagacgcgtt tggtatgcgc gagtcgcatc
      421 gtcttgactt cgatacattc acgctcgtct accttcgcga tcccgagacc ggcgccgaga
      481 tcgaactcac gctgaacaaa ggtacaacga cgccctacac gcacggcacg ggctacggcc
      541 acgttgcatt cgcggtcgac gatatcgaag cattccgtga ccgtctgcta agccaaggca
      601 tgcaaccagg cgacctgaaa tcgctaaccc acagcggcgc catcgccgca cgctttttct
      661 tcatcaccga tcccgatggc tacaagatcg aggtgttatc cagggagggc cactacgtat
      721 gaactgacgt tggcgcggta cacaatataa aaggagacaa atcatgccca aggcaatccc
      781 cattgccata gtcgtcgccg agaccttcac cggatcgact ggcgacgcga tccccgctgt
      841 atcgtctgct tcgtctgcgc gcgtgagccg caggcacttc ctccaaggtt ccgtcgtgct
      901 gaccggtttg ctggtggccg gcaccccgat cgccctgctg gcgccaagcc gcgcgtgggc
      961 ggtggaactg agccatatcg atcagaatca ggccgacgcc atcatggtgc tcgcgcgcac
     1021 cctctacccg cacaagacgc tgccggacgc ggtctacgcg ctcgcggtca aggacgtgga
     1081 cgcaaaagcc actgacccga agacgatcga tgtcatcaag accggcgtgg cgaaactgaa
     1141 cgatgccgcg tccggtaaat ggaacgacac agcaagcctc tcggacgcgc agcgaaccgc
     1201 cattgtcgag gccaaccaga ccgatccgtt cgtcctgctc gtgcgtggcc agtgcgtcac
     1261 ctcgctctac aacaacgaga tggcgtttgc ccatttcggc tacgaaggtg aagcgttcag
     1321 caagggtggc tacgtgtatc gcggcttcaa cgacctgacc tggctaccca atccgcccgc
     1381 cgacgcaagt ccgccggttg cctgatatcc gggatccgga ttagagatcc gggcgcacat
     1441 ctgatactgc cgaggaggca agcatggcta agttcgacta caacgacgac tccgtcgtcg
     1501 tgatcgtcgg ttcgggcgcg ggcggcggga cgctggcaaa cgagttatgt cagaaagggg
     1561 tgaaagtggt cgtgctggag gcaggcaagc gccagtcgtc agccaccttc attaacgatg
     1621 aatggaagtc cttcgggcaa ctcgcctgga ccgacaaacg caccacgtca ggtaactggc
     1681 gcgttgccaa ggacttcccg gaactgcccg catggatctg caagacggtt ggcggcacga
     1741 ccacgcactg ggcgggcgca tcgttgcgga ttcacgagca tgagttcaag gcgcgcacga
     1801 cctatggctc catcgatcag gcgaacctgc tcgactggcc gatcacactc gccgatctcc
     1861 aaccctacta cgcgcgcgcc gaagacaaga tgggcgtcac gcgcacgaac aacattccgg
     1921 gtctgccggg caacaacaac ttcaagatca tgtacgacgg cgcgacgaag ctcggctaca
     1981 agaactgcag taccggccac atggcgatca acagtcggcc gcgcgccggc cgcggccgtt
     2041 gcatgcaact cggcttctgt ttccagggct gcaagtcggg cgcaaaatgg tcaacgctct
     2101 ataccgagat tccagcgggc gaagccacgg gcaggctaga actaaggcca gagtcgcatg
     2161 tgatgcgcat agagacgaac gcagccggca aagccagcag cgtggtctac atggatgccg
     2221 acggcaaaca gcagcgtcag cgtgcacggg tggtctgcgt cgcgggaaac tcgatagaaa
     2281 caccacgcct gttattgctc tcggaatcgt cgaagcatcc tgacggcctc gcaaacagct
     2341 cgggccaggt gggacgcaat tacatgcggc ataccacggg ctcggtattc ggcgtgttca
     2401 aggagcccgt gcatttttat cgcggcacag tgatggcagg catcatcacg gacgaagcgg
     2461 aattcaatcc aaagcgcggt tttgcgggcg gctatgaaat ggaaaccatc tcgctcggcc
     2521 tgccgttcgc cgccgcattc ttcgatccgg gcgcatgggg atcggacttt acttactata
     2581 tggataacta cgcaaatacc gccggcatgt ggattgtcgg cgaggatatg ccacgtgaga
     2641 ccaaccgcgt cacgctgaat catgacgtga aggatcaggt cgggttgccg gtcgcgaacg
     2701 tccattatga cgatcatcca aatgacatcg ccatgcgcaa tcatgcgttc aagcaaggtg
     2761 aagcgatcta cgcggcagcc ggggcagtga ggacgctgcg cacgccgccc tacccgtcca
     2821 cgcacaatct gggtacctgc cggatgagcg cgaaagcgag tgatggtgtc tgcaacaagc
     2881 acggccagac ctttgacgtg ccgaacctgt ttatctccga cggcagtcag ttcacgacaa
     2941 gcgcggccga aaatccgacg ctgactattg tgacgctggc gatccggcaa tcggattaca
     3001 tcgcggacca gatgaaacgc cgtaatatct agcaggcttg caaaagaacc cgaaggaacc
     3061 accgcccggc ggttcattct tcattgtaag gagctgtcca tgtgcaggat ctacgctcaa
     3121 accgatccga ttctctatga atgccgcgcg cgctcagtgc gcatcagcgg cgtgacgaca
     3181 accatccggc tggaaaacct gttctggcag accttgtccg aactcgccgc cgacaacgac
     3241 atgacgacca accagctgat cgcgaagttg catgaggaga tcacgcagca tttgggcgaa
     3301 acgacgaatt ttgcgtcgtt cctgcgcgtc acctgtcttc gatatcaagg gctgagggcg
     3361 aacgcatcga tggattttcg cagccacgtg gcagcggcga cgactgacaa ggtggcgggc
     3421 tgaccgatga taaaaccgat gaccggacgt gcatgggtga catggtcctg cggcgcgctg
     3481 ctagcggcat tcgtgctgcc ggcgcaggtt gcacaggcgg caccggacgg tgcagctgcc
     3541 ttgtcgatcg tgcagaagaa caactgtctc tcctgtcatg ccgtggattc gcaggttgtc
     3601 gggccggcat atcgagagat cgcgaagaag tatcacgggg acactacggc gcccgacaag
     3661 ctgttcgcca aagttcgcaa tggcggggcc ttcgtttggg gagaagtccc catgccggcg
     3721 aaccacagta ttagcgacgc cgacctgcgt accgtcatcg cgtggattct cgccggggcg
     3781 cccgaccact aagccggttc accacgcctg agcgcgctgc cccttctatg cagcgcgcga
     3841 tattccttct cccgtctagg taaaacccct gatttcgcgc gatcttctca cgcactaatc
     3901 tcgcgtcact ggtaaacaga acgacgttct gttagataga acgataaaaa gcgagacgcc
     3961 cataggaggg ttcaatggca agcgtgccaa tcgatgcgac acacgggtcg cctaattcaa
     4021 gcgccgacgt gggtgacaca acattcggcg tcaatgcgcg catcgaccgg ctgccggcga
     4081 cgcgttccgt atggatgctg gtgttcctgc tgtccatcgg cggctggttc gaattctacg
     4141 acctgttttt caccgcgtac gtgggccccg ggctcgtcaa aagcggcctc tattccacga
     4201 cgacagcgtc cttcttcggc gtctctggac tcggcgcgtt cgtggcggcg tcgtttgccg
     4261 gcttgttcat cggcacattc tttctcgcag gtctcgccga caaatatggt cgccgcaccg
     4321 tcttcaccgt ctcgctgctc tggtattcgg cggcaacgct gatcatggcg ctgcaaacca
     4381 ccgcgcccgc gatcaacctg tggcggctga ttgcaggcat tggcgtgggc ttggagcttg
     4441 tcaccatcga tacctacgtg agcgagcttg tccccaaaca tctgcgcggc cgtgcgttcg
     4501 cgttcgtgca cctggttcta tactccgcgg taccctcggt cgcgtttctc gcgtggtggc
     4561 tcgtgccgca aaaaccgttt ggcctggacg ggtggcgctg ggtcgtgatc atcggcgcac
     4621 tgggtgcgat cgtggtctgg gcgatccgcc ggcgcgtgcc tgaaagtccc cgttggcttg
     4681 cgcagcaagg ccgcacggcg gaagcggaga aggttttgca agcgatcgag gcaaaggtcg
     4741 ctgcgcaata cggacgcgcg ttgccgacgc cggttgcaac cgtcgaaccg gcgacaacga
     4801 aagccgcgtt ccgcgaaatc tggcagccgc cgtatcgcaa acgcgcgatc accatgctcg
     4861 tcttcaactt cttccaggca atcgggttct acggtttcgc gtcctgggtg ccgacgctgc
     4921 tcgtctccaa gggcgtcacg atcacgcata gcttgctgta ctcgtttgtc atcgcgatct
     4981 cgaatccgtt tgggccgctg atcgggatgg cgattgcgga ccggattgaa cggaaaacgt
     5041 tgatcgtgtt gtcggcgttc gggattgtgg tattcggcag cttgttcgcc acccagacat
     5101 cgccggtcat gctgatgatc ctcggcgtga tgatcacgct ctgcggcacg ttgctttcgg
     5161 tcgggtatca cgcgtaccaa accgagctct tccccacacg cctgcgtgcc cgagcagttg
     5221 gtttcgttta ttccatctcg cgtctttcag ccatgttttc cggcttcatg atcgcgttcg
     5281 cgctgcgcca cttcgaagtg accggcgtgt tcgccttgat cagcgtgtcg atggtgatgg
     5341 tgatgggcgc gatcggcatc ttcgggccgc gtaccaacaa ccgcaatctc gatgaaattt
     5401 cgcaatgaac acgaggtttt gacatgacgc ttccgttaac tggcgtgcgg gtgctggatc
     5461 tatcgaatgt gctggccggg ccgttctgcg cgtatcaact cgcgttgctc ggtgccgaag
     5521 tgatcaaggt cgagcacccg gaaggcggcg atctggcaag gcgcctgggc gccgataaag
     5581 acgcgtcggc acgcgacatg ggtgcgtcgt tcgtggccgt caatgcgggc aagcagtcaa
     5641 tcacgctgaa cctgaaagat gcgcgcggca aggagatctt gcgctcgctc gtgaagacgg
     5701 cggatgtgct cgtggaaaat ttccgccccg gcgtgatgac acgtttggac ctcggttacg
     5761 aggctttgag cgagatcaat cctaagctcg tttattgcgc gatctccggt ttcggcaagg
     5821 acggcgaatt ttcgaggcgg ccggcttacg accagatcat ccagggtatt tccggcgtga
     5881 tgagcgtgac gggcgatgcc gacagtgcgc cgctacgcgt gggttatccg gtctcggaca
     5941 cggtcggggg cctgacggcg gcattcggca tttgcgcagc gttggtcgat gcccgtgcga
     6001 acggccgtgg ccggatgctc gatgtatcga tgctcgaggc cacgctatcg accatgggct
     6061 gggtcgtgtc gaactacctg aacgctggtg tcacgcccgc gccgatgggc aacgaaaact
     6121 tcacggccgc gccgtctggc acgttcaaaa cgggcgatgg cttgctgaac atcgcggcga
     6181 atgaaacgaa gcaattcgtg agtttgtgca ggttgatcgg gcggccggat ctctcggatg
     6241 acccgcgctt ttccgaacgc aacacgcgca aggtgaaccg cgcggcgttg aaggccgaga
     6301 ttgaagccgc attagcaaag gacagcgcga tgaattggga tgcgaagttt accgaggccg
     6361 gggtgccggc tggacgcgtg atgtcagtgc cggaaatcct cgcgcatccg catctggtat
     6421 cgcgtgaatt cgtgcgcgag ttcaatggcg acgaccccac gacccggcaa cgcgttaccc
     6481 gcgcgggctt ccgtttctcc gatgcggaca ccgcgcccgc cacccccgcg cccacgttgt
     6541 ccgccaacac gcgcgagcat cttgcaacgc tcggtttcga cgacatacag atcgacgaac
     6601 tacgcgccga aggagtgatc tgaccatgac gcaagctttt gacgccgcca cgctcgccgc
     6661 ggattactgg agcacatcga tcatcgatat ccatccggga tcgatcaacg tgcgcggctt
     6721 tccgattcag gaactgatcg gcgcggtcag tttcccgcag atgatctggc tgatgctgcg
     6781 aggggaattg ccggacaaag cgcaggcaag cttgtttgaa gcggcgcttg tggcgtcggt
     6841 ggatcatggt ccgcatgcgc cgtccatcgc catctcgcgc atggcgacga
//
LOCUS       DATGBK010001688         3208 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_275146, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001688 DATGBK010000000
VERSION     DATGBK010001688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275146"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..447)
                     /gene="fae"
                     /locus_tag="VKJ77_23730"
     CDS             complement(<1..447)
                     /gene="fae"
                     /locus_tag="VKJ77_23730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017330620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016840 - carbon-nitrogen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0016051 - carbohydrate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formaldehyde-activating enzyme"
                     /protein_id="HMC48349.1"
                     /translation="MPTPQTGRTLNIGEGFEGPGVNLAHINVLVGPRNGPAGQAFATA
                     LATPSAGHAPFVVIAQPGVPTKPLTLYVNKAPIAGEFHGNATWGASQAGIAKAVAESL
                     EDGTLPPEADNDWVVVTANWVNPSTDDLDAVFRNNYRAAKNAIKAAM"
     gene            complement(617..907)
                     /locus_tag="VKJ77_23735"
     CDS             complement(617..907)
                     /locus_tag="VKJ77_23735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007732864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1272 domain-containing protein"
                     /protein_id="HMC48350.1"
                     /translation="MLALRPSCECCGKALPPNARDAMICSFECTFCENCVSSRLGNVC
                     PNCGGGFQLRPIRPKAMLERRPASTDVHPAGVNEHAHRAFFDRYSAIPPSER"
     gene            complement(974..2359)
                     /locus_tag="VKJ77_23740"
     CDS             complement(974..2359)
                     /locus_tag="VKJ77_23740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015295 - solute:proton symporter activity
                     [Evidence IEA];
                     GO_process: GO:0015718 - monocarboxylic acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate:H+ symporter"
                     /protein_id="HMC48351.1"
                     /translation="MHLTSTLAAWSAHDTRLLIACALGLASIIVLISALKLAPFLSIL
                     VGTFVAGFTASLPLEAVAGAFSKGAGGILGDVGIIIALGAMLGALMAESGAADRLVST
                     ILDHSTPRTLPWLMALVAIIIGLPLFFEVGLVMMVPIIFVMARRSKQPILRIAIPALA
                     GMTTLHALLPPHPGPLIAVSALHADLGITMGLGFIIAIPAVILAGPVYGMWLSRRMHV
                     EEPEEMGKLFSSKVDANGALDAPSFGISLLTILLPVILMLGRTVAKLAIQPETLLFDT
                     LNFLGEPLIALGLTVLFAIVALGWSRGMPRDRVGGILRKSLPPICALLLTIGAGGGLK
                     QTLVVAGISTTIGKIAIGSHMPLILLAWLIAVALRQATGSATVATTTTAGIIAPVVAG
                     LSATHNSLLALAIGAGSVFFCHVNDAGFWMVREYFGLQLKQTVYVWSVLQTIVSVVGL
                     ALTLVMWGVLT"
BASE COUNT          643 a          931 c         1020 g          614 t
ORIGIN      
        1 catcgctgcc ttgatggcgt tttttgccgc gcggtagttg ttgcgaaaga cggcgtcgag
       61 atcgtctgta gacgggttca cccagttcgc cgtcaccact acccaatcgt tgtccgcttc
      121 gggtggcaac gtgccgtcct cgagcgattc ggcgactgcc ttcgctattc ccgcctgcga
      181 tgcgccccac gttgcgttgc catggaattc gccggcgata ggcgccttgt tcacatagag
      241 cgtgagcggt ttggtcggca cgccaggttg tgcaatgacg acaaacggcg cgtggccggc
      301 cgaaggcgta gcaagtgccg tggcgaacgc ctggcccgcg gggccgttgc gcgggccgac
      361 aagcacgttg atgtgagcga gattgacgcc cggaccttca aagccctcgc caatattgag
      421 ggtacggccg gtttggggtg ttggcatgct ggcttccgtt catggagtgg atcgatgaac
      481 agattgtgcg agcgcgcgtc gatgaggagg aatcgacgat tcgtgcggac gggtatgagc
      541 gccgctcaga tcagggaatg ccctgaggcc ggggagcagg ccgtcgttgg ccgacggccc
      601 ttaggcctac tagcgtttat cgctcggaag gggggatcgc actgtagcga tcgaagaatg
      661 cgcgatgcgc gtgctcattc acgccggccg ggtgcacgtc ggtcgaggcc ggccggcgct
      721 cgagcatggc tttcggtcga atcgggcgga gctggaagcc gccaccgcaa ttggggcaca
      781 cgttgccgag ccgcgacgac acgcagtttt cgcagaacgt gcattcgaag ctgcagatca
      841 tcgcgtcgcg cgcgttgggc ggcagcgctt tgccacagca ttcacaagag gggcgcaagg
      901 caagcatgat caatatctcc ttttcgcatt ctagaatcgg agcgcccgct agccttgcca
      961 atctgcccac gatttacgtc agcacgcccc acatgaccag cgtcaacgcg aggccgacta
     1021 ccgagacgat ggtttgcaac accgaccaga cgtagacggt ttgcttcaac tgcaagccga
     1081 aatactcgcg gaccatccag aaaccggcgt cgttgacgtg gcagaaaaac accgaacccg
     1141 cgccgatcgc cagcgccagc agcgagttgt gggtcgcgct taagcccgcc acgaccgggg
     1201 cgatgatccc cgcggtggtc gtggtcgcga cggtcgccga gccggtcgcc tgccgcaagg
     1261 ccactgcgat cagccaggcc agcaggatca gcggcatgtg cgagccgatg gcgatcttgc
     1321 cgatcgtcgt gctgattccg gcgacgacta gcgtctgctt gagaccgccc cccgcgccga
     1381 tggtcagcag caaagcgcag atcggcggca ggcttttgcg caggatgccg cccacccggt
     1441 cacgcggcat gccgcgcgac cagcccagcg cgacgatcgc gaaaagaacg gtgagtccca
     1501 gggcgataag tggctcaccg agaaaattga gggtatcgaa gagaagggtt tcgggctgga
     1561 tcgccagttt cgccactgtt cggcctagca tcaggatgac aggcagaaga atggtcaaca
     1621 acgagatgcc gaagctcggc gcgtcgagcg ctccgtttgc atcgactttc gatgagaaca
     1681 gcttgcccat ctcttccggc tcctccacgt gcatgcggcg cgacagccac atgccgtaga
     1741 ccggcccggc gagaatcacc gcgggaatgg cgatgatgaa accaagcccc atggtgatcc
     1801 cgaggtccgc gtgcagcgca ctgacggcga tcagcggacc cggatgtggt ggcagcagcg
     1861 cgtgcagcgt cgtcatgccg gcgagcgcag ggatcgcgat gcgcaggatc ggctgcttcg
     1921 agcggcgcgc catcacgaag atgatcggca ccatcatgac gagacccacc tcgaagaaca
     1981 gcggcaagcc gatgatgatg gccaccagcg ccatcagcca cggcaacgtg cgcggcgtgg
     2041 agtgatcgag gatggtggag accagccggt cggccgcgcc cgactccgcc atcagcgcgc
     2101 cgagcatggc cccgagcgcg atgatgatgc cgacatcccc caggattccg cccgcccctt
     2161 tgctgaacgc gcccgcgacg gcttccagcg gcaagctcgc cgtgaaaccc gcgacaaaag
     2221 tgccgacgag gattgagaga aacggcgcaa gtttcagcgc gctgatgaga acgatgattg
     2281 acgccagacc gagcgcgcat gcgatgagaa gacgcgtgtc gtgggcggac cacgcggcga
     2341 gagtcgaggt cagatgcact gagatgccct tggctaagtg gagggggtga ctggtttgtc
     2401 cgtttgcccg tttgccgttt gtccgcgact gccgttatta gtcagtcagg catcgaagtc
     2461 gcaggcatcg cacggtcgcc ggattttacg agcgaaggct tacaaaatac ttgagatgct
     2521 ttcagatcgt aggggtttgg aggtgaattt taggtggcga gcattgtgtc tgattggagg
     2581 tagtcggatc agtcccgtta tttagcggat acggggcggg atactggcgg acgcaagtgt
     2641 gcgctttacg acttcatcgc gttgattcgg gttgagggat cgccctgctc ttggttcgat
     2701 tcatttctgc gttctttgcg ccttgacgtc ttggtcgatt aaaagcttat tgagactagt
     2761 ttccaagttt ggccagtgtt ccctgttagt cgcgttcact gtcacatatg acgtctaccg
     2821 tgtttaataa ttttaattat tataatttca atccaaacca gcgactgttg caagcattac
     2881 gaccgcagcg acctgcacgg aaagaagcgc tttcaacaag cggaggtgcg ggatagcgaa
     2941 ttttgatggt gtcgggaagt ggcagcgaac aagcgcctgt agaaaacctt cggccctgac
     3001 caccactcct gacatttcgg acccgaccca ggcgcccaaa actgcacgca tcagaacgcc
     3061 gctcgggctg agtggtcgag gtttgtccca gtcgttttgt ctcagtcgcc gaggcgggca
     3121 ccttcggtcc ctcagctagc tggccacaga agaccacgga aatcgccacg cgtgatgcca
     3181 gactttatgc gcataaagct ccgcctcc
//
LOCUS       DATGBK010001689         1789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_297712, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001689 DATGBK010000000
VERSION     DATGBK010001689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297712"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1103)
                     /locus_tag="VKJ77_23745"
     CDS             complement(<1..1103)
                     /locus_tag="VKJ77_23745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019719570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC48352.1"
                     /translation="MSSSRVAARVQRIKTSPSSAAADRAAELRRQGRTIVNLAIGEPD
                     FPTPAHIRRAAADAMERGETRYTQTAGSLALRTAIAAKLREENGLGYEPKQVIVTCGA
                     KHAIFNALAVTVEPEDEVLIPAPYWVSYPDMVLACEGKPVVLPCAEADGFKLTAQTLE
                     AAITARTRWLILNSPNNPTGASYSATELRALADVLVRHPHVLILTDDIYEHIRFDDQA
                     NPHIVAIEQSLSERTIVVNGMSKTYAMTGWRIGYAAGPADLIAAMDTLQSQSTSCASS
                     VSQAAALAALEGDQSSLAEALAIYRARRDRGLDLLNAITGLSCRTPGGAFYLFVNCGG
                     LIGKQTPGGKRIAGDMDVVAYFLEAAGVVLVAGS"
     gene            1400..>1789
                     /locus_tag="VKJ77_23750"
     CDS             1400..>1789
                     /locus_tag="VKJ77_23750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007881152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48353.1"
                     /translation="MNLRRLKYFVKIVDLGSLTQASEILHIAQPALSQQLMILEGEFR
                     HQLLIRTKRGVTPTEAGHTLYRHAQIVLRQLEQARSDMEKTGDKLVGKVSVGLAPGTA
                     ASALSLPLLKAVRARHPGVLLYLNESFG"
BASE COUNT          354 a          571 c          524 g          340 t
ORIGIN      
        1 gaacccgcga ccagcaccac gcctgctgct tcgagaaaat aggcaacgac atccatgtcg
       61 cccgcgatcc gcttgccgcc cggggtttgt tttccgatca ggccgccgca gttgacgaac
      121 aaatagaatg cgccgcccgg cgtccggcaa ctcaacccag tgatcgcatt gagcaggtcg
      181 aggccgcggt cgcgccgcgc gcgatagatc gccagtgcct cagccagact gctttggtca
      241 ccctccaggg cagccagcgc agccgcctgg ctcaccgacg atgcacaact ggtcgattgc
      301 gattgcagtg tgtccatcgc cgcgatcagg tcagctggac cggccgcata accgatccgc
      361 catcccgtca tggcataggt cttcgacatg ccgttgacga caatcgtgcg ctcgctcaac
      421 gactgctcga tagcgacgat gtgcggatta gcctgatcgt cgaaacggat gtgctcgtag
      481 atgtcgtcgg tcagtatcaa cacgtgagga tgacgcacga gcacatccgc gagggctcgc
      541 aattcggtgg cggaatacga agcgccagtc ggattgttgg gcgaattgag gatgagccaa
      601 cgtgtgcgcg ccgttatggc agcctcgagc gtctgcgcgg tgagcttgaa gccgtcggcc
      661 tcggcgcaag gcaggacgac cggcttgcct tcgcaggcaa gcaccatgtc ggggtaggac
      721 acccaatacg gcgcgggaat cagcacttca tcttccggct cgaccgtcac cgcaagcgca
      781 ttgaagattg cgtgtttcgc cccgcacgtc acgatgactt gcttcggctc gtagccgaga
      841 ccgttctcct cgcgcagctt cgccgcgatc gcggtgcgca acgccagcga gcctgcggtc
      901 tgcgtataac gtgtctcgcc acgctccatg gcgtcggccg ctgcacggcg aatgtgcgcc
      961 ggcgtcggga aatcgggctc accgatcgca agattgacga tagtccggcc ttgccgccgc
     1021 aattcagcgg cacgatccgc agcagcactg ctgggtgacg ttttgatgcg ctgcacgcgc
     1081 gcagctactc gagacgaact cactccacac tcctttttga cacggggatg gcatcaaggt
     1141 aagtgggaga aaaaagtcag gccaagacga attcgttcta ccggaatcgc aaacgcttat
     1201 accgtcggcg aacgcgttcg ccgcgccgga aaaaggttcc accgacctcg tcccgcgccc
     1261 cgttcctctc gtgccaacgc cgtcgaggaa ccgagggtta aacattattt tttcgttgta
     1321 tctcgcagga accgcttgct ttaccatttc catctcgctc tgcgaaaagc agagtccatc
     1381 atccgcggga cagacgttcg tgaatctgag gcgcctgaag tacttcgtga aaatcgtcga
     1441 tctgggcagc ctgacgcagg cctccgagat tctccatatc gcccagccgg ccctcagcca
     1501 gcagttgatg atccttgaag gcgaattccg ccatcagttg ctgatacgca cgaaacgcgg
     1561 cgtgacaccg actgaagccg gtcacaccct ataccggcac gcgcagatcg ttttgcggca
     1621 gctagagcag gcgcgcagcg acatggagaa gaccggcgac aagcttgttg gcaaggtctc
     1681 ggtcggtctc gccccgggta ccgccgcatc ggccctgtcg ctgcctctgc tcaaggccgt
     1741 acgcgcccgc catcccggcg tgctgttgta tctcaacgag agcttcggc
//
LOCUS       DATGBK010001690         3692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_135616, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001690 DATGBK010000000
VERSION     DATGBK010001690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3692
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135616"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..365)
                     /locus_tag="VKJ77_23755"
     CDS             complement(<1..365)
                     /locus_tag="VKJ77_23755"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403665.1"
                     /note="catalyzes the carboxylation of acetyl-CoA to
                     malonyl-CoA; forms a tetramer of AccA2D2 subunits; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit beta"
                     /protein_id="HMC48354.1"
                     /translation="MSWLDKLLPPKIKQTDPKSRKGIPEGLWIKCPSCEAVLYRNDVE
                     ANLHVCPKCDHHMRIGARERLDALLDPEGRYEIGQEILPVDALKFKDSRKYTERMKEA
                     MDDTGETDAMVVMGGAIHT"
     gene            complement(440..1243)
                     /gene="trpA"
                     /locus_tag="VKJ77_23760"
     CDS             complement(440..1243)
                     /gene="trpA"
                     /locus_tag="VKJ77_23760"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HMC48355.1"
                     /translation="MSRIKSTFAALAEQGKKGLIPFITAGDPNPEQTVEFMHALAKGG
                     ADVIELGVPFSDPMADGPVIQRSSERALAKGVSLKHVLADVKRFRETNTTTPVVLMGY
                     ANPIERMGTEAFATAAKDAGVDGVLVVDYPPEESVEFSASMRAAGIDPIFLLAPTSTD
                     DRIAAVGKVASGYVYYVSLKGVTGSANLDVASIASKIPAIKAHVALPVGVGFGIRDAA
                     SAKLVADVSDAVVIGSRLVQLLEEAPPEKAAELLTSFIAEIRSALDSAK"
     gene            complement(1308..2201)
                     /locus_tag="VKJ77_23765"
     CDS             complement(1308..2201)
                     /locus_tag="VKJ77_23765"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HMC48356.1"
                     /translation="MRDEIDHASAHGAAGGDVHSGTDRGIHLHHRDFLTDAANLPDGS
                     IDLIVADPPYGLGKDYGNDSDMRSGEAFLDWTYGWLELAIPKLKPSGSLYIFCTWQYA
                     PEIFVFLKRRLTMVNEIVWDRRVPSMGGTVRRYTSVHDNIGYFAVSKDYFFDLDPIRI
                     PYDAVTKKARSRKLFEGSKWLELGYNPKDVWSVSRLHRQHAERVDHPTQKPLEIIERM
                     VLASCPRGGRVLDPFMGSGTTAVACARHGREFVGYEINADYHAIAERRVVETRSVEVR
                     VEPKAVEETAATASVDQANAA"
     gene            complement(2213..3406)
                     /gene="trpB"
                     /locus_tag="VKJ77_23770"
     CDS             complement(2213..3406)
                     /gene="trpB"
                     /locus_tag="VKJ77_23770"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020071052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HMC48357.1"
                     /translation="MYNLPDDRGHFGPYGGTFVSETLIHALDELRDAYAECSKDPAFI
                     AEYEYELKHYVGRPSPIYHAKRWSEMLGGAQIFLKREDLNHTGAHKVNNVIGQALLAR
                     KMGKPRVIAETGAGQHGVATATIAARFGMECVVYMGSEDVRRQAANVYRMKLLGATVV
                     PVESGSKTLKDALNEAMRDWVTNVENTFYIIGTVAGPHPYPMMVRDFQRVIGDECKVQ
                     MPEMTGRQPDAVIACVGGGSNAMGIFYPYIEDKDVKLIGVEAAGDGISTGRHAASLIG
                     GSPGVLHGNRTYLLQDENGQIIETHSVSAGLDYPGVGPEHAWLKDAGRAEYVGITDEE
                     ALKGFHDCCRIEGIIPALESSHALAYAAKLAPTLAKDKLLLVNLSGRGDKDMHTVAER
                     TGITF"
     gene            complement(3465..>3692)
                     /locus_tag="VKJ77_23775"
     CDS             complement(3465..>3692)
                     /locus_tag="VKJ77_23775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-(5'-phosphoribosyl)anthranilate isomerase"
                     /protein_id="HMC48358.1"
                     /translation="GGGKVFDWSLIPTDLGHRAVLSGGLNAQNVLDAIRRVRPYAVDV
                     SSGIEVAGAKGVKDHARMAAFVRAVREADAG"
BASE COUNT          688 a         1169 c         1042 g          793 t
ORIGIN      
        1 aaggtgtgga tggcaccgcc catcacgacc atcgcatcgg tctcgccggt gtcgtccatc
       61 gcttccttca tacgctcggt atatttgcgg ctgtccttga acttgagcgc atcgaccggc
      121 aggatttcct ggccgatttc atagcggcct tccggatcga gcagggcgtc gaggcgctca
      181 cgcgcgccga tgcgcatgtg gtgatcgcac ttcgggcaca cgtgcagatt agcctccacg
      241 tcgttgcggt acagcaccgc ttcgcacgac gggcacttga tccatagccc ttccggaatg
      301 cccttgcggc ttttcggatc ggtttgcttg atcttcggcg gtaacaattt gtcgagccag
      361 ctcatcgtgt gtccttccta gtttcgcgtg ttttgcggcc catgtggaga ggttttaacc
      421 tcagggccgc attaacgggt tattttgcag aatcgagcgc agagcgaatt tcagcgataa
      481 agctcgtcag cagctcggcc gccttctccg gcggcgcttc ttcgagcaat tgcacgagac
      541 ggctgccgat caccaccgca tccgatacat cggccaccag cttggccgac gcagcgtcgc
      601 gaatgccgaa acccaccccc accggcaacg cgacatgcgc cttgatggcc gggattttac
      661 tcgcgatgct ggccacgtcc agatttgccg aaccggtcac gcctttgagc gacacgtagt
      721 agacataacc actcgccact ttaccgaccg ctgcaatgcg gtcatcggtc gatgtgggcg
      781 caagcaggaa gatcgggtcg atgccagcag cgcgcatcga tgcactgaat tccaccgact
      841 cttccggcgg gtaatcgacg accagaacac catccacgcc cgcgtctttc gccgctgtgg
      901 caaaagcttc ggtgcccatt cgctcgatcg ggttcgcgta gcccatcagg accaccggcg
      961 tagtggtgtt ggtctcgcgg aagcgcttca cgtcggcgag tacgtgcttc agcgagacgc
     1021 ccttggccaa cgcgcgttct gacgagcgct ggatcacggg accatcggcc attggatcgg
     1081 aaaaaggcac gcccagttcg atgacatccg ctccgccctt ggcgagcgca tgcatgaatt
     1141 caacggtttg ctcggggttc ggatcaccgg ccgtgatgaa cgggatcaaa cctttcttgc
     1201 cctgctcggc caacgccgca aatgtgcttt taatacggga catgagttaa tctctttgcg
     1261 cgaaatccgc gccttttagc gttttttagc agtgacttgg cagagtgtta agcggcgttc
     1321 gcttgatcga cggaagcggt ggccgcggtc tcttccacgg cctttggttc aaccctgacc
     1381 tcgacggaac gtgtctccac gacccgcctt tcggcaatcg cgtgatagtc ggcgttgatc
     1441 tcgtagccaa caaactcgcg cccatgacgc gcacaggcaa cggcggtcgt gccgctgccc
     1501 atgaacggat cgagcacgcg cccgccacgc ggacaactcg ccaggaccat ccgctcgatg
     1561 atctcaagcg gcttttgcgt cggatgatcg acacgctcgg cgtgttgcct gtgcaaccgc
     1621 gacaccgacc atacgtcctt cgggttgtaa cccagctcca gccacttgct gccttcgaac
     1681 aatttgcgcg aacgcgcctt cttcgtcact gcgtcgtagg ggatgcgaat gggatcgaga
     1741 tcgaagaaat agtccttcga taccgcgaaa taaccgatgt tgtcgtgcac tgacgtatat
     1801 ctgcgcaccg ttccgcccat gctcggtacg cgccggtccc acacgatctc gttgaccatc
     1861 gtgaggcggc gcttgaggaa cacgaagatc tccggcgcat attgccacgt gcaaaaaatg
     1921 taaagcgaac cacttggctt gagcttcgga atggccagtt caagccagcc gtaggtccag
     1981 tcgaggaagg cctcacccga acgcatgtcc gaatcgttgc cgtaatcctt gcccagtccg
     2041 tacggtggat cggccacgat caggtcgatc gagccgtccg ggaggttcgc tgcatcggtc
     2101 aagaaatcgc ggtgatgcaa gtggatacca cggtcagtgc cgctgtggac gtcgccaccg
     2161 gcggcgccgt gcgcactcgc atgatcgatt tcatcgcgca tcggttgcgg gctcagaacg
     2221 tgatgccggt gcgctcggcg accgtatgca tgtccttatc gccacggccc gacagattga
     2281 caagcagcaa cttgtctttg gccaacgtgg gcgcgagctt cgcggcgtaa gcgagtgcgt
     2341 ggctcgattc cagcgcagga atgatccctt cgatccggca gcaatcgtgg aaacccttca
     2401 gcgcttcttc gtcggtaata cccacgtact cggcgcgccc cgcatccttc aaccacgcgt
     2461 gttccgggcc aacgccggga taatccagcc cggctgaaac cgaatgcgtt tcgatgatct
     2521 ggccgttttc atcctgaaga agatacgtgc ggttgccgtg tagaacgccc ggacttccgc
     2581 caatcagcga cgccgcgtga cggcccgtgc tgatgccatc gccggccgct tccacgccga
     2641 tcagcttcac atctttatct tcgatatacg gataaaagat gcccatcgca ttcgatccac
     2701 cgccaacgca cgcgatcacc gcgtccggct ggcgccccgt catttcgggc atctggacct
     2761 tgcattcatc gccgattacg cgctggaagt cgcggaccat catggggtaa ggatgcggcc
     2821 ccgccaccgt accaataatg taaaacgtgt tctccacgtt cgtcacccag tcgcgcatgg
     2881 cttcattgag cgcgtctttc agcgtcttgg agcccgattc gacgggcacg accgtcgcgc
     2941 cgagcagctt catgcggtac acgttcgccg cctggcgccg tacgtcttcc gagcccatgt
     3001 agaccacgca ttccatgccg aaacgcgcgg cgatggtcgc cgttgcaacg ccgtgctgtc
     3061 ccgcgccggt ttccgcgatc acgcgcggct tgcccatctt gcgcgcgagc agcgcctggc
     3121 cgatcacgtt attaactttg tgcgcgccgg tgtgattcag gtcttcgcgc ttgaggaaga
     3181 tttgcgcgcc gccgagcatc tcgctccagc gtttggcgtg ataaatcggc gacggacggc
     3241 cgacgtagtg cttcagttcg tactcgtatt ccgcgataaa tgccgggtcc ttgctgcatt
     3301 ccgcgtaggc gtcgcggagt tcatcgagtg cgtggatcag cgtttcagat acgaatgtgc
     3361 cgccatacgg gccgaaatga ccccgatcgt ctggtaagtt gtacatgtgt cactctctcg
     3421 gtacgtggaa gcgttgcgct tgcccacgtc gtttcccatc ttgatcatcc agcgtctgct
     3481 tcgcgcaccg cgcgtacaaa cgccgccatt cgggcgtgat ctttcacgcc cttcgccccc
     3541 gctacttcga tgccgctgga gacatcgacc gcgtaagggc gcacgcgccg gatggcgtca
     3601 aggacgtttt gcgcgttcaa cccaccactc aaaacggccc gatgcccgag atctgttggg
     3661 ataagtgacc aatcgaatac ctttccaccg cc
//
LOCUS       DATGBK010001691         2984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_251229, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001691 DATGBK010000000
VERSION     DATGBK010001691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251229"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VKJ77_23780"
     CDS             complement(<1..497)
                     /locus_tag="VKJ77_23780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007745608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HMC48359.1"
                     /translation="MAVFTAVTDSQLTDWLQHYELGEAVDFRGIASGIENSNFFLTTT
                     RGAYVLTIFENLTATQLPFYLDLMRHLASHAVPVPDPMPRRDGALFGTLNGKPAAIVT
                     KLDGAPELAPGPLHCIEVGQMLARLHLAGRDFPAHQPNLRSLAWWKENVPAVLPHLSD
                     AQRTL"
     gene            complement(656..1054)
                     /locus_tag="VKJ77_23785"
     CDS             complement(656..1054)
                     /locus_tag="VKJ77_23785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48360.1"
                     /translation="MKPLQSVAIAAILAAASMGAYAQSAVATDAPPAHVMSPEENAGL
                     PDLKAINRPAAQVTSKVEISPPRLPSYHETSTNGTEITEYRDKGKPVEIDVRSNFGTR
                     YQMSAPADTSPSVRDNGKPSTRLPSWNLTY"
     gene            1266..2798
                     /locus_tag="VKJ77_23790"
     CDS             1266..2798
                     /locus_tag="VKJ77_23790"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008714 - AMP nucleosidase activity
                     [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0044209 - AMP salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HMC48361.1"
                     /translation="MTNDRTQASHSTPANNFPTESFDDPVAAVARVSAIYEANTSFLR
                     DAFARYRKNEPFSHRVRACYPFVRVRTELNTQIDSRRSYGFVAGPGIFETTLTRPDLF
                     GHYYREQLRLLTKNHHVGIEVGVSAQPVPIHFAFAEGIHLEGDLDRDRLLAMRNIFDM
                     PDLALLDDRIVNGTYEPGPGEPHPLALFTAARVDFSLHRLKHYTATAPTHFQNYVLYT
                     NYQFYIDEFVKLGRTIMSRADDEETRAYRSEYMSFVEPGDVITGNENLGDSQEEQQGV
                     APPRLPQMPAYHLKRADGSGITMVNIGVGPSNAKTITDHIAVLRPHAWIMLGHCAGLR
                     NTQRLGDYVLAHGYVREDHVLDADLPLWIPIPALAEVQVALEKAVAQVTKLEGVDLKH
                     VMRTGTVASVDNRNWELRDHREPVQRLSQSRAIALDMESATIAANGFRFRVPYGTLLC
                     VSDKPLHGELKLPGMADQFYRAQVDQHLQIGVKAMELLRMNGLSKLHSRKLRGFAEVA
                     FQ"
     gene            complement(2892..>2984)
                     /locus_tag="VKJ77_23795"
     CDS             complement(2892..>2984)
                     /locus_tag="VKJ77_23795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HMC48362.1"
                     /translation="EAVLQFYEDRETAEEQPAEGKSDEDRMFYL"
BASE COUNT          617 a          830 c          905 g          632 t
ORIGIN      
        1 atcagcgtgc gctgtgcgtc gctcaaatgc ggtagcacgg cgggcacgtt ctccttccac
       61 catgcgagac ttcgcaagtt cggctgatgc gcggggaaat cccggccggc caaatgaagc
      121 cgcgccagca tctgacccac ttcgatgcaa tgcaagggac ccggcgccag ttccggcgcg
      181 ccgtccagtt tcgtcacgat tgccgccggc ttgccgttca gcgtgccgaa aagcgcgccg
      241 tcacgacgtg gcatggggtc aggtaccggc acggcgtgcg acgccagatg gcgcatcaaa
      301 tcgagataaa acggcaattg cgtggccgtg aggttctcga agatcgtgag cacatacgcg
      361 ccgcgcgtgg tcgtcaggaa gaagttgctg ttctcgatac cggatgcaat gccacggaaa
      421 tcgacggctt cgccgagttc gtagtgttgg agccagtcgg tgagctggga atcggtgaca
      481 gcggtgaata cggccatgcg ggagagcgtc ggtgaggttg aacatgcagg atgaccgacg
      541 ggcgcgtcag tcgggcgttg cgttgccgag aaacggcggc gcggcgcagg gctcagcgga
      601 taaaacgggc agaggtgaag gcttaacgag tgttcagcaa gccttcaata aacgctcagt
      661 acgtcaggtt ccacgatggc aggcgcgtgc tgggcttgcc gttatcgcgg acgctcggcg
      721 aggtatccgc gggcgcgctc atctgataac gcgtgccgaa gttcgagcgc acgtcgattt
      781 caaccggttt tcctttgtcg cggtattcgg tgatttcggt gccgttcgtg cttgtttcgt
      841 gatagctcgg caggcgcggc ggcgaaattt ccaccttcga cgtgacttgc gcggcgggcc
      901 ggttgatggc cttcaggtcc ggcagcccgg cattctcttc aggcgacatg acgtgcgccg
      961 gaggagcatc cgtcgcgacg gccgattgcg cgtaggcgcc catgctggct gcggcgagaa
     1021 tggccgcgat ggcgacagat tgaagcggct tcatgatgtt tctccagatg agtgcccgaa
     1081 ttttagcaaa acgcactcgc taaagggacg ttgagtccct cccaaaggcc ttattttgcg
     1141 ctggtttcat tgaaagcgtg ttggcgcggt ggaacgtgtt gaagaaacgc atcgccggga
     1201 agggtgttca tgggcgtgcg gttcttccgt gttaatgtcg attcatcaca agagcgcaga
     1261 agatcatgac aaacgaccgg actcaagcaa gccattccac gcctgccaac aactttccta
     1321 cggagtcttt cgacgacccc gtggccgcgg tcgcgcgggt atcggcaatc tacgaagcca
     1381 acacctcttt cctgcgcgac gctttcgcgc gctatagaaa gaacgaacct ttttcacatc
     1441 gcgtgcgggc gtgttatccg ttcgtgcgcg tgcgtaccga gttgaatacg caaatcgatt
     1501 cacgccgttc atatggcttt gtcgcagggc cgggcatttt cgaaaccacg ctcacgcggc
     1561 ccgatttatt tggtcattat tatcgcgagc aattgcggct tctgaccaag aatcatcatg
     1621 tcgggattga ggtgggtgtg tcggcccaac ccgtgcccat tcacttcgcg tttgcggaag
     1681 gcatacacct ggaaggcgac ctcgatcgcg accggctgct cgccatgcgc aatatcttcg
     1741 atatgcccga tctcgcgctg ctcgacgacc gcattgtgaa cggcacctat gaaccgggtc
     1801 cgggcgaacc gcatccgctc gccttgttca cggcggcgcg ggtggatttc tctttgcatc
     1861 ggctgaagca ttacaccgcg actgcgccta cgcatttcca gaactatgtg ctctatacga
     1921 actaccagtt ttatatcgat gagttcgtga agctcggacg cacgatcatg tcacgcgcgg
     1981 acgatgaaga aacacgggcg tatagaagcg aatacatgtc gttcgtggaa cctggcgacg
     2041 tgattacggg caacgagaac cttggcgatt cgcaagagga gcaacagggc gtcgcccctc
     2101 cccggttgcc gcaaatgccc gcctatcatc tgaaacgcgc cgatggcagc ggcatcacca
     2161 tggtcaatat aggagtgggt ccgtcgaatg cgaagacgat cacggaccat atagccgtgc
     2221 ttcggccgca tgcctggatc atgctcgggc attgcgcggg attgaggaat acgcaacgcc
     2281 tcggcgacta tgtattggcg catggctatg tgcgtgagga ccacgtcctc gacgccgatt
     2341 tgcccctctg gattcccatt cccgcactgg ctgaagtcca ggtcgcgctg gagaaagcgg
     2401 tcgcgcaagt gacgaaactc gaaggcgtgg atctgaagca cgtgatgcgc acgggaaccg
     2461 tagcgagcgt ggataaccgt aactgggaac tacgcgatca ccgtgagccg gtgcagcgtt
     2521 tgtcgcaaag ccgggcgatt gcgctcgata tggaaagcgc aaccattgcc gccaatggat
     2581 ttcgttttcg cgtgccttac ggaaccttgc tgtgcgtctc cgataaacct ttgcacggcg
     2641 aattgaaatt gccgggcatg gcggaccagt tttatcgcgc gcaagtagat cagcacttgc
     2701 agatcggcgt gaaggcgatg gagttgttgc ggatgaacgg gctatcgaaa ctgcatagcc
     2761 gtaagttgcg aggttttgcg gaagttgcat tccaataggg ctttccaata gggcattccc
     2821 ataacgcaaa aagcggctcc gaaaggagcc gctcatcgag cgctcatgca gtcaaacccg
     2881 ctatcaaacc atcaaagata aaacatccgg tcttcatccg acttgccttc ggccggctgt
     2941 tcttccgctg tctcgcgatc ttcgtagaac tgcaacaccg cttc
//
LOCUS       DATGBK010001692         3236 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_135665, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001692 DATGBK010000000
VERSION     DATGBK010001692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3236
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135665"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1084
                     /locus_tag="VKJ77_23800"
     CDS             <1..1084
                     /locus_tag="VKJ77_23800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC48363.1"
                     /translation="DISMAVQAMRDGAYDFIEKPFASERLIEAVRRALERRTLVLENR
                     ALRRELAGQSSVAPRIIGRSPAIEQVRKLIANVAPTDASVLINGDTGAGKELIARSLH
                     DLSPRRDKPFIAVNCGALPEQMFESEMFGYEAGAFTGAQKRRIGKLEHASGGTLFLDE
                     IESMPLALQVKLLRVLQDGVLERLGSNQPIRANCRVIAAVKGDMTEHIAAGTFRRDLM
                     YRLNVVTITLPPLAERREDVVPLFEHFLLDAAVRYERPAPLLNDRQRAELMQRDWPGN
                     VRELRNAADRMVLGIIDETGVPLDAATQSLKERTEQFERAVIGEALEQCGGVVAAAAD
                     QLQLGKATLYEKIKRYGLAAKGEVER"
     gene            complement(1203..1739)
                     /locus_tag="VKJ77_23805"
     CDS             complement(1203..1739)
                     /locus_tag="VKJ77_23805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HMC48364.1"
                     /translation="MSENSQVSPGRSKSPLRYIVMAVVAGVIACTGYFAFGGQQRVPD
                     ATFTLLSGQKISTSTDLKGKVYLINFWATDCETCMKEMPAMVDTYNRFKGRGLEFVAV
                     AMKYDAPMYVTNYAQTRNLPFKVAMDDGSAAKQFGNVQLTPTTFVVDKDGKILKRYVG
                     EPTFAELDALLDKALNAA"
     gene            2050..2613
                     /locus_tag="VKJ77_23810"
     CDS             2050..2613
                     /locus_tag="VKJ77_23810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012399651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48365.1"
                     /translation="MRSPRTLFKSAVSTTTLLFTAAALLACTPAYDWRTIQNNDDAYE
                     VTFPAKPHSDARDIDVAGKPMHMKMQMAEAGDAVFAVGTVDLPDADPATQRAALDFLQ
                     QGLARNLNAAPAAHPVDIEVAAGGRLSGAEITVNGTSANGQKSETHQIRARFIAKGTH
                     AYQVAIVSTKAPPPDQIDQFFSSFKLF"
     gene            complement(3001..>3236)
                     /locus_tag="VKJ77_23815"
     CDS             complement(3001..>3236)
                     /locus_tag="VKJ77_23815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015001509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC48366.1"
                     /translation="GKTNRELDGREVDAVCQLDATGEALLREAGERFGWSARAYYRVL
                     KVARTIADLAAADSPTAAHLAEAIQYRRAFTTA"
BASE COUNT          642 a          946 c          962 g          686 t
ORIGIN      
        1 cgacatctcg atggccgtcc aggccatgcg cgacggcgcc tacgatttca tcgaaaagcc
       61 gttcgcgtct gagcgattga tcgaagcggt tcgacgcgcg ctggagcgtc gaactctagt
      121 gctggagaat cgcgccctgc ggcgtgaact cgcgggccag agcagcgtgg cgccgaggat
      181 catcggacgc agcccggcga ttgaacaggt gcgcaagctg atcgccaacg tggcgcccac
      241 cgatgcctcc gtgctgatca acggtgacac tggcgccggc aaagagttga tcgcgcgcag
      301 cctgcacgat ttgtcgccgc gccgggacaa accttttatc gcggtgaatt gcggcgcgtt
      361 gcccgaacag atgttcgagt cggagatgtt cggctacgag gctggcgcgt ttaccggtgc
      421 gcagaaacgc cgcatcggca agctcgaaca tgcatcgggc ggcacgctgt tcctcgatga
      481 gatcgaaagc atgccgcttg cgttgcaagt gaaattgctt cgcgtactgc aggacggcgt
      541 gctggagcgg ctgggctcga atcagccgat tcgcgcgaat tgccgcgtga tcgcggcggt
      601 gaagggcgat atgacggagc acatcgcggc aggtacgttt cggcgcgacc tgatgtaccg
      661 gctaaacgtg gtgacgatca cgctgccgcc gctcgctgaa cgccgcgaag acgtggtgcc
      721 gctgttcgag catttcttgc tcgatgccgc cgtgcgatac gagcgccccg cgccgttgct
      781 caacgatcgc cagcgagcag agctgatgca gcgcgactgg cccggcaatg tgcgtgaact
      841 gcgcaacgcg gcggaccgga tggtgctggg tatcatcgat gaaaccggtg tccccctcga
      901 tgccgcgacg caatcgctca aggagcgtac ggagcagttc gaacgtgcgg tgatcgggga
      961 ggcgttggag cagtgcggcg gtgtggtggc cgcggcggcc gaccagcttc agctcggcaa
     1021 agccacgctc tacgaaaaga tcaaacgcta tggactggcg gcgaaggggg aggttgagcg
     1081 gtagacgaga cgcggcgttc tgcgtatttt ttccgcgttc gaaccaaaaa gcaaaacgcc
     1141 cgccgatgtt aatcggcggg cgttttgttc ttaaccgggt aacgcgtcaa gccgaaccgg
     1201 cctcaggcag cgttcagtgc tttgtcgaga agcgcatcga gttccgcgaa cgtcggctca
     1261 cctacgtaac gcttcaagat cttgccgtcc ttatccacga cgaacgtagt cggcgtcaat
     1321 tgcacattgc cgaactgctt tgcggcgctg ccgtcgtcca tcgcaacctt gaacggcagg
     1381 ttgcgcgttt gcgcgtagtt ggtcacgtac atcggggcgt cgtatttcat cgccaccgcg
     1441 acgaattcga ggccgcggcc cttgaagcgg ttgtacgtat cgaccattgc cggcatctct
     1501 ttcatgcagg tttcgcagtc ggtcgcccag aagttgatca ggtagacctt gcccttgaga
     1561 tccgtcgatg tcgaaatctt ctggcccgac aacagcgtga acgtggcgtc cggaacgcgt
     1621 tgctgaccgc cgaacgcaaa atagccggtg cacgcaatca cgccggcgac aaccgccatc
     1681 acgatgtagc gcagcgggct cttgctgcgc cccggtgaga cctgtgaatt ctctgacatg
     1741 gaaacctcga gcatgctcgg ttcgtacttg gttcgtactt ggttcgggct tggctcgtcg
     1801 ttggcctact cgcaacaaca ccagcctgac tggatgcacc gcattttagc cccaatctcg
     1861 aaaaagagtt cggcggacgt cttgctgtga gccgtttgca aggcagggca gtgtcccatg
     1921 cgaaagctgc tgtctgggtc accggcaacg gtttcagcac cggcagcgga taatcatgct
     1981 tttccctcag cttttcccat gatccgatct tttcaccgcg ccttgaagcg cgctgttctt
     2041 cataccgcag tgcgttcccc gcgcacgctg ttcaagtcgg ctgtttcgac aaccacgctc
     2101 ttattcaccg ccgccgcgct gctggcctgc acgccggcct acgactggcg cacgatccag
     2161 aacaacgacg acgcgtacga ggtgaccttc ccggcgaagc cgcactccga cgcccgggat
     2221 atcgacgttg ccggcaagcc gatgcatatg aagatgcaga tggcggaggc gggcgacgcg
     2281 gtattcgctg tcgggacggt tgacctgcct gatgccgacc ccgcgactca gcgcgctgcg
     2341 ctcgattttc ttcagcaagg tttggcgcgc aatcttaacg ctgcgcccgc tgcgcaccct
     2401 gttgatattg aagtggcggc aggcggacgt ttgtccggcg cggaaattac cgttaacggc
     2461 acaagcgcca acggccagaa aagcgaaacg catcagatcc gtgcgcgttt catcgccaaa
     2521 gggacgcacg cttaccaggt cgcaatcgtc tcaaccaagg cgccgccccc cgatcaaatc
     2581 gatcagtttt tttcctcctt caaacttttt taagtatttg ctctaaagcg catctattcg
     2641 ttcgcgaata tttctcaaat tgaacagcgc aaagcaaacg tttcgggcat gagaaatcgc
     2701 acaagcattt tcagctaaaa ctaggattta tctcagtttt ttgaactatc cacagaggct
     2761 gtggataact ttgtggaaaa cctcaactgg ccctcgccaa gtgcccgccc gacgcggctt
     2821 tccttacttt gccttgattc agtgcacccg aaaatagtta ataaaatcaa aggcctggtg
     2881 atcattgcgg aaatgagtgt ttgatcagat gttagagaaa cgaagaacgc tgcaatgtgc
     2941 ataagtcaag tcttgacagg cgaattttct ttttgcgagg gctgcggttc cggtggtggt
     3001 ttatgcggtc gtaaatgccc gtcgatactg gatcgcttcg gcgaggtggg ccgcggttgg
     3061 tgaatcggct gccgcgagat cggcgatcgt gcgcgccact ttcagtacgc ggtaatacgc
     3121 ccgcgccgac catccgaatc gttctccggc ttcgcgaagc agggcttccc cggtggcatc
     3181 cagctggcag acggcgtcca cttcgcgtcc gtccagctca cgattcgtct tccctt
//
LOCUS       DATGBK010001693         2057 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_275271, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001693 DATGBK010000000
VERSION     DATGBK010001693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275271"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1073)
                     /locus_tag="VKJ77_23820"
     CDS             complement(<1..1073)
                     /locus_tag="VKJ77_23820"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC48367.1"
                     /translation="MALQTEAFRWNVPDDFNFARDVIDRLATEDRRGLLFVDAAGKQH
                     DFTFAQIAEASQKWAAALRDAGVAKGDRVIIVLPKVPQWLFAMLGLLRIGAVAIPGAE
                     QLRAKDLLFRANHSGATTIIAPAANAAEVDLIRPDAPDLKRFFLEGGEHAGWTAIEPL
                     VDAAVPYAGEPTRHDDMAYIVYTSGTTKDPKGVVHRVAYTYAKRMQAEFWFDCHPSDL
                     VWCTAGTGWAKSLWNVLLGPWSRGSCIVLHEGAFAAEARMDMIRDLGVTVLCQAPTEY
                     RLEVKLPDLGTRWNLPKLRHCVSAGEPLNPEVIVLWREAFGLTILDGYGQTENSLLVA
                     NRPGLEVRPGSMGIPTPGHDIKVV"
     gene            1072..1347
                     /locus_tag="VKJ77_23825"
     CDS             1072..1347
                     /locus_tag="VKJ77_23825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48368.1"
                     /translation="MARGFTPAPGAPADMEFPDFARILRASKVRFGPLRAQGAPAILL
                     GVATVVMAAGAIRVLGAGAPNLPESIREFRHLLESGRSSKDATKLPS"
     gene            1351..1587
                     /locus_tag="VKJ77_23830"
     CDS             1351..1587
                     /locus_tag="VKJ77_23830"
                     /inference="COORDINATES: protein motif:HMM:NF013851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HMC48369.1"
                     /translation="MIDNDSMTALIRTALPDAQVQIWDRTGTMDHFDVLVRSNAFAAM
                     SLMDRHRTVEKALSGARADGRIHALAIRTDLLES"
     gene            1588..1947
                     /locus_tag="VKJ77_23835"
     CDS             1588..1947
                     /locus_tag="VKJ77_23835"
                     /inference="COORDINATES: protein motif:HMM:NF012675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin domain-containing protein"
                     /protein_id="HMC48370.1"
                     /translation="MSDPTTLREQIDKEVAGNKILIYGKGTKDAPRCGFTAETIEFFN
                     HFGYPYAVVDVLEDMPKRAALAEMTDWQTLPKVFIDGAFYGDTDILAPMAQNGELIKV
                     LEKAFAGSGVEPAIKLH"
BASE COUNT          432 a          668 c          564 g          393 t
ORIGIN      
        1 acgactttga tatcgtggcc cggcgtgggg atccccatcg accccggacg cacttccaag
       61 cccggccgat tcgcaacgag caacgagttt tcggtttggc cgtatccatc gagaatcgtg
      121 agcccaaacg cttcgcgcca gagcacgatc acttcgggat tgagcggttc gcccgcggat
      181 acgcagtgac gcagcttcgg caagttccag cgcgtgccta aatccggcag cttcacttcc
      241 aaccggtatt ccgtcggcgc ttggcacaac accgtaacgc ccaaatcgcg gatcatatcc
      301 atacgtgctt ccgctgcaaa agcgccctcg tgcaatacga tgcatgaacc gcgcgaccac
      361 ggcccaagca aaacgttcca caacgatttc gcccagccgg ttcccgccgt gcaccaaacc
      421 aaatcgctcg gatgacagtc aaaccagaat tcggcttgca tccgttttgc gtacgtgtaa
      481 gcaacgcgat ggacgacacc cttggggtct tttgtcgtgc cgctcgtgta cacgatgtac
      541 gccatatcat cgtggcgcgt cggctcaccc gcatagggaa cggcggcatc aacgagcggt
      601 tcgattgccg tccagccggc gtgttcgcca ccctcgagaa aaaagcgctt gagatcgggc
      661 gcatcgggcc gaatcaaatc cacttcggcg gcgtttgcag cgggcgcaat aatcgtggtt
      721 gccccactgt ggttcgcgcg aaacagtaaa tcttttgcgc gcagttgctc ggcacccgga
      781 atcgcaacgg caccgatgcg taatagccca agcatcgcaa ataaccactg cgggaccttc
      841 ggcagcacga tgatgacgcg atcgcctttt gccacacccg catcgcgcaa cgccgcggcc
      901 catttctgcg acgcctcggc aatctgcgca aacgtgaagt cgtgctgctt gccggcagcg
      961 tcgacaaaca gcaacccgcg ccggtcttcg gttgccaagc ggtcgattac atcacgagca
     1021 aaattgaaat cgtcgggaac attccagcga aaagcttcgg tctgtagcgc catggcgcga
     1081 ggattcaccc cagcgcccgg cgcacccgcc gatatggaat tccccgactt cgcccgtatc
     1141 ctgcgcgcct cgaaggttcg cttcggcccg ctgcgtgcgc agggcgcacc cgctattttg
     1201 ctcggcgttg cgaccgttgt catggctgca ggagcgatac gcgtgctcgg cgcgggcgcc
     1261 cccaatctgc ccgagtcgat tcgcgaattt cgccatttgc tcgaatccgg ccgcagctcc
     1321 aaagacgcca caaaactacc gtcctaaccg atgatcgata acgattcgat gacggcactc
     1381 atccgcacgg ccctgccgga cgctcaggtg caaatctggg accggaccgg caccatggac
     1441 catttcgatg tgttggtacg gtcgaacgct ttcgcggcga tgtcgctcat ggaccgccac
     1501 cgcaccgtcg aaaaggccct ctctggcgcc cgcgccgacg gccgcatcca cgcgctcgca
     1561 attcgcaccg acctcctgga gagctaaatg tccgacccga ccaccctgcg cgaacagatc
     1621 gataaagaag ttgccggcaa taagattctg atctacggca agggcaccaa agacgcacca
     1681 cgctgcggtt tcaccgccga aacgattgaa tttttcaatc atttcggcta cccgtatgca
     1741 gtcgttgacg tgcttgaaga tatgcccaag cgagcggcgc ttgccgagat gaccgactgg
     1801 cagacgctgc ccaaggtctt tatcgacggc gcgttttacg gcgacaccga tatcctcgcg
     1861 ccgatggcgc aaaacggcga gctgatcaaa gtgctcgaaa aagcctttgc cggcagcggc
     1921 gtcgagccgg cgatcaaact gcactaagcc gcgtgctcga attatatcca ccgcagggca
     1981 aagccgaatg gcttcgctct tgtgtttggt cgcagccgtt tcggccacgg ttctttgaga
     2041 ccgatgcgct gggtcac
//
LOCUS       DATGBK010001694         3879 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_89284, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001694 DATGBK010000000
VERSION     DATGBK010001694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3879)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3879
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89284"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VKJ77_23840"
     CDS             complement(<1..290)
                     /locus_tag="VKJ77_23840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48371.1"
                     /translation="MAIFKSKLHAVWSNAPSGKAPGGLHALNTAYKPFQVSVDAPNWR
                     VKRPLRLDRTVPAAARGLLDSHHQATTLRFPAYLFYMKTFHCGRCQHHVFFE"
     gene            311..3766
                     /locus_tag="VKJ77_23845"
     CDS             311..3766
                     /locus_tag="VKJ77_23845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HMC48372.1"
                     /translation="MSIRVALNHVTHYRYDRLVGLSPQVVRLRPAPHCRTPIVSYSMR
                     VEPAEHFINWQQDAFANYQARLVFPEKTREFKITVDLVAEMAVYNPFDFFLEPYAEKF
                     PFAYEPELAAELAPYLIKREPTPLLAKFVDSIDKTPKVTADFLVELNQRLQHDIGYVI
                     RMEPGVQTPEETLEKALGSCRDTGWLLVEALRQLGLAARFVSGYLIQLTPDQKSLDGP
                     SGTEVDFTDLHAWCEVFLPGAGWIGLDPTSGLLAGEGHIPVACTPEPGSAAPISGAVD
                     ESEVEFEHIMQVQRVLETPCVTKPYTEEVWTAVQKMGAQVDQELTDMDVRLTMGGEPT
                     FVAVSDRDAAEWNTDALGPTKRGYAVSLMDKLRARYGVGGFLHLGQGKWYPGEQLPRW
                     AMSLFWRADGEPIWEDPKLFADERDPGNYTAEDARRFIEHLADKVSLDPSYIQPGYED
                     TFYYLWRERRLPVNVDPFESELEDEMERMRLRRVFDAGLSQVTGYVLPIARERDVPMQ
                     EPTWVSGPWFFRDGRMYLIPGDSPMGYRLPLESLPWVSAGDFPYQHPHDPFGPPAPLR
                     QAMELRMQYRGEALVGEGIEGKAGEGAGAGTGTGVAAGTGRAPATSTREPSRGESASW
                     IRRTALCVEARDPARAAGPDVEEKSFGSGKSLLHVFMPPLTELDDYLDLLAAIEATAA
                     DLHMKVVIEGYPPPRDARLKMLQVTPDPGVIEVNIHPASSWDQLVDHTEFLYQSAHES
                     YLSTEKFMTDGRHTGTGGGNHFVLGGATPADSPFLRRPDLLASLIAYFINHPSMSYLF
                     SGLFLGPTSQAPRVDEARNDQLYELEIAFKEIEHQLERLGGRDSALLPPWLIDRTLRN
                     LLIDVTGNTHRAEFCIDKLYYPDGPTGRLGLLELRGFEMPPHARMSLVQQLLLRALVA
                     RFWDKPYTTRLTRWGTELHDRFLLGTFIEMDFHDVIADLNEAGYAFDAAWFAPHFEFR
                     FPLVGAVQSNGIELTVRSALEPWHVMGEQGSPGGTVRYVDSSVERLEVRVLGLNDNRH
                     VVTVNGVPLPLQSTGRVSEHVAGVRFRAWSQPTALHPSIGVDAPLTFDIVDTWSNRSI
                     GGCRYHVAHPGGRNYVTYPVNAYEAESRRRARFFRIGHTPGRMVVEEPKRSLEFPFTL
                     DLRRR"
BASE COUNT          735 a         1167 c         1231 g          746 t
ORIGIN      
        1 ttttcgaaaa aaacgtgatg ctggcaacgg ccgcaatgaa atgttttcat ataaaagaga
       61 taggctggaa agcggagcgt ggtggcttga tggtggctat caagcaagcc acgtgccgcc
      121 gcaggaacgg tccggtccag acgcaaaggg cgttttacgc gccagtttgg tgcatcgacg
      181 gacacttgaa acggcttgta cgcagtattt agtgcatgta agccgccggg agccttgccc
      241 gatggtgcat tcgaccaaac ggcatggagt ttgcttttga agattgccaa aattcgtcca
      301 ggagtcaggt gtgtcaatcc gtgtcgcgtt gaaccatgtc acgcactacc gttatgaccg
      361 cctcgtcggc ctttcaccgc aggtcgtgcg cctgcggcct gcgccgcatt gccgtacccc
      421 catcgtttcc tattcgatgc gggtcgagcc agccgaacac ttcatcaact ggcagcagga
      481 cgcgttcgcc aactatcagg cgaggctggt ctttcccgag aaaactcggg aattcaagat
      541 cacggtcgat ctggtcgccg agatggcggt gtacaaccca ttcgacttct tccttgagcc
      601 ctacgccgag aaatttccgt tcgcgtacga accggaactc gcggctgagt tggcgccgta
      661 tctgatcaag cgcgagccca cgccgttgct ggccaagttt gtcgacagca tcgacaagac
      721 gcccaaggta acggccgatt tcctggtcga actgaaccag cggctgcagc acgacattgg
      781 ctacgtgatt cgcatggaac ccggcgttca gacgccggaa gagacgctcg aaaaagcgtt
      841 gggatcgtgc cgcgacacag gctggctgct cgtcgaggct ttacgtcagc tcgggctcgc
      901 cgcgcgcttc gtttcgggtt acctgatcca gctcaccccc gaccagaagt ccctcgatgg
      961 cccgagcggc accgaagtcg acttcaccga cctgcacgcg tggtgcgaag tcttcctgcc
     1021 cggcgcgggc tggatcggac tcgacccgac ctccgggctg ctggccggcg aagggcatat
     1081 ccccgtcgcc tgcacgcctg aaccggggag cgctgcgccg atctccggcg ctgttgatga
     1141 gagcgaagtc gagttcgagc acatcatgca ggtgcagcgc gtgctcgaaa cgccatgcgt
     1201 gacgaaaccg tacacggaag aagtgtggac cgcggtgcag aagatgggcg cgcaagtcga
     1261 ccaggaactg accgacatgg acgtgcgcct gacgatgggc ggcgagccca cgttcgtcgc
     1321 cgtgagcgac cgcgatgcag ccgaatggaa caccgacgcg ctcgggccga cgaagcgcgg
     1381 ttatgccgtc tcgctgatgg acaagctgcg agcgcgttat ggcgtaggcg gttttctgca
     1441 cctcggccaa ggcaagtggt atccgggcga gcagttgccg cgttgggcca tgtcgctgtt
     1501 ctggcgcgca gatggcgagc cgatctggga agaccccaag ctattcgccg atgaacgcga
     1561 tcccggcaac tacaccgccg aagatgcacg gcggttcatc gagcatctgg cggacaaggt
     1621 ctcgctggat ccgtcgtata tccagcccgg ctacgaagac acgttctact acctgtggcg
     1681 tgaacgtcgc ctgccggtga acgtggaccc gttcgaatcc gaactcgaag acgagatgga
     1741 acgcatgcgt ttgcgtcgcg tattcgatgc aggcttgtcg caggtgacgg gttatgtgct
     1801 gcctatcgcc cgggaacgcg atgtcccgat gcaagagccg acatgggtca gcggcccctg
     1861 gtttttccgc gatggccgca tgtacctgat tcccggcgac tcgccgatgg gttaccgctt
     1921 gccgcttgaa tcgctgcctt gggtgagtgc gggggacttt ccgtatcaac atccgcacga
     1981 tccgttcggg ccgcctgcgc cgttgcgtca ggcaatggaa ttgcgcatgc aatatcgcgg
     2041 ggaagccctg gttggggagg gtatcgaagg aaaagcgggc gagggtgcgg gagcaggcac
     2101 tggcacgggc gtggccgccg gcaccggacg tgcgcctgca acctcaaccc gcgagccgtc
     2161 gcgtggcgag tcggcttcgt ggatccggcg tacagcgctg tgtgttgaag cgcgagatcc
     2221 tgcgcgtgcg gcaggaccgg atgtcgaaga gaaatcgttt ggaagcggca agagcctgct
     2281 gcatgttttc atgccgccgc tgaccgaact cgatgactac ctcgacctgc tcgcggccat
     2341 tgaagcaacc gccgccgacc tgcacatgaa agtggtgata gaagggtacc cgccaccacg
     2401 cgatgcccgt ctcaagatgc tgcaagtcac cccggacccg ggcgtgatcg aggtgaacat
     2461 tcatccggcg tcgagctggg atcaactcgt tgatcacacc gagttcctgt atcaatcggc
     2521 gcacgaaagt tacctcagca ccgagaagtt catgaccgac gggcgacaca ccggcacggg
     2581 cggcggcaat cacttcgtgc ttggcggtgc gacgcctgcc gacagcccgt tcctgcggcg
     2641 ccccgacctg cttgcaagcc tgatcgcgta cttcatcaac catccgtcga tgtcgtatct
     2701 gttctcggga ttgttcctcg gacccacgag ccaggcgccc cgtgttgacg aagctcgcaa
     2761 cgaccagctt tacgagttgg agatcgcctt caaggagatc gagcatcagc tcgaacgcct
     2821 gggcgggcgc gacagcgcat tgctgccgcc gtggctgatc gaccgcacgt tgcgtaacct
     2881 gctgatcgat gtgaccggca atacgcaccg cgcggaattc tgcatcgaca agctgtatta
     2941 ccccgatggt ccgaccggcc gcctcggcct gctcgaactg cggggcttcg aaatgccgcc
     3001 gcacgcccgc atgagcctcg tccagcagtt gctgctgcgc gcgctggtcg cgcggttctg
     3061 ggacaagccg tacaccacgc gcctcacgcg ctggggcacg gaactgcatg accgtttcct
     3121 gctcggcacg ttcatcgaaa tggatttcca cgatgtgatc gcggacctca atgaagctgg
     3181 ttatgcgttc gatgccgcgt ggttcgcgcc gcatttcgag ttccgtttcc cgctggtggg
     3241 agcggtccag tcgaacggga tcgaactgac ggtgcgcagc gcgctggagc cgtggcacgt
     3301 gatgggcgag caggggtcgc cgggcggtac ggtgcgttat gtggattcgt cggtggaacg
     3361 gctcgaagtg cgcgtgcttg ggctcaacga caaccgccat gtggtgacgg tcaacggcgt
     3421 gccgctgcca ttgcaatcca ccgggcgggt gagcgagcat gtggccggcg tgcgcttcag
     3481 ggcatggtcc cagccgacgg cgctgcatcc gtcgattggc gtggatgcgc cgcttacctt
     3541 tgacatagtt gacacttgga gcaaccgatc cataggcgga tgccggtatc atgtagccca
     3601 tccgggtggc cgcaattacg tgacctatcc ggtcaacgca tacgaggcgg aaagccggcg
     3661 gcgcgcgcgc tttttcagaa tcggccatac gcctgggcgg atggtcgtgg aggaaccgaa
     3721 gcgcagcctg gagtttccgt tcacgctcga tttgcgccga cggtagcctc atcaacgaaa
     3781 actgctcaat ttggccttcc aatccacgct tccgtttgaa gcaatcacca accgcgcgag
     3841 tgtgtcgtca caccttcgcg cggtaccggc ccgggaggg
//
LOCUS       DATGBK010001695         3121 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_344156, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001695 DATGBK010000000
VERSION     DATGBK010001695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3121
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344156"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..382
                     /locus_tag="VKJ77_23850"
     CDS             161..382
                     /locus_tag="VKJ77_23850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48373.1"
                     /translation="MLSPHELSTLLLIQHSPSQVEPQCSDVASLEHEHLVSIDASTNG
                     RATPRLTSQGSELLQQLHRFCTREFAENH"
     gene            complement(418..1014)
                     /locus_tag="VKJ77_23855"
     CDS             complement(418..1014)
                     /locus_tag="VKJ77_23855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC48374.1"
                     /translation="MGYSQAQKAESRQRVLDTAARQIREHGLEALGVADCMRSAGLTH
                     GAFYGHFSSRDALILAALEQAMTRGQKRVMSRAAGAAEHSKTPFEAIVDAYLHPAHAD
                     NPGTGCALCALAGDAVHATADVKALYTTHLRRLADRLTQAAGGGDGSGSETLGLGVVA
                     TIVGAITLARAVDDHELALSILTAAHALVMTQDGTAQQ"
     gene            1158..1934
                     /locus_tag="VKJ77_23860"
     CDS             1158..1934
                     /locus_tag="VKJ77_23860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC48375.1"
                     /translation="MRFTDKTALITGGNSGIGFAVAKLLIAEGARVAITGRDRAKLDE
                     AVSALGANALGIKADLDVPAAIDSVIKQVSDAYGSLDIVFANAGISGPTPLGGTTAAA
                     FEAILRTNLTAVFLTVQAALPLMSAGGSIVLNGSVMRELGRAGTAAYAASKAGITGMA
                     KVFAGELVQRGIRVNTVIPGGTRTPIWTRGARAGATIDGTEQALSPAIPMGRFAAAEE
                     VAEAVAFLASDGASGITAAEIVVDGGTIGAPWGAPALRAS"
     gene            complement(2006..2974)
                     /gene="andR"
                     /locus_tag="VKJ77_23865"
     CDS             complement(2006..2974)
                     /gene="andR"
                     /locus_tag="VKJ77_23865"
                     /inference="COORDINATES: protein motif:HMM:NF041686.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0019439 - aromatic compound catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate 1,2-dioxygenase regulatory protein
                     AndR"
                     /protein_id="HMC48376.1"
                     /translation="MSQGAFRADALRGYRLFESTDLDETRELISRVMQPHALVPSGTG
                     RGRSHMDFVKLGGLGLGTIAFGDAMRVNVKSVDGYYLMMFCVTGNAEVRTMGRSMQVN
                     RNQGVLCAPGQAFDALLSPGCEQFVLRIDPVALNAHAGLAAQDFAALVPVGSPHLRGW
                     MQQLQLVASSPELLASARSSPRVAAHLEGLLIDLFATGHVGNEIESGFASQRSLVSPG
                     FVKRAEAFIEANCREPLELLDIANAVGVSARTLRDGFQQFRGVSPMQYVRQLRLERAR
                     DALRAAPLDVRVAEIALDCGFAHLGRFSMVYKAMFGESPSETLRGR"
BASE COUNT          627 a          983 c          933 g          578 t
ORIGIN      
        1 agtttctgcc ggcaacggtt acgccccgcc cgggcgctcg cctattgcga gaatgtaact
       61 gtgtaatgcc gtgaaaaatg gctgtagcga gaatgtcgat ttgactctct aggatgcatg
      121 aacgcaaacc gccgcgattc attcatgcaa ggagattccc atgctcagcc ctcacgagtt
      181 gtcgacactg ctcctgatcc aacattcgcc gtcacaggtc gaacctcaat gttccgacgt
      241 ggcaagtctc gagcacgaac acctcgtcag tattgacgcg agcacgaacg gtcgggctac
      301 gccgcgcctg acttcacaag gttccgagtt attgcagcaa ctgcatcgat tttgcacccg
      361 tgaatttgcc gagaaccact gaacctgcac taacgcccgt cgtcgtccac cccggattca
      421 ttgctgggca gtgccgtcct gtgtcatgac gagcgcatgc gcggcggtga gaatcgacag
      481 cgccagctcg tgatcgtcca ctgcgcgcgc cagtgtgatc gcgcccacaa tcgtggcaac
      541 cacccctagt ccaagcgttt cgcttccgct tccgtctcca cctcccgctg cttgagtcaa
      601 ccgatctgca agccgccgca agtgcgtggt gtagagcgct ttcacgtccg ccgtcgcatg
      661 caccgcgtcg ccggcaagtg cacacagtgc gcatccggtg ccgggattgt ccgcatgagc
      721 gggatgcagg taggcatcga cgatcgcttc gaacggtgtc tttgaatgtt ccgccgcacc
      781 ggccgcgcgc gacatcacgc gtttctggcc ccgcgtcatt gcctgttcca gcgcggcgag
      841 gatcaacgca tcgcgcgacg aaaaatgtcc atagaacgcg ccgtgcgtaa gccctgcgct
      901 gcgcatgcaa tcggcgaccc ccaacgcttc caggccgtgc tcgcggatct gccgcgctgc
      961 cgtatccagc acgcgttgcc tgctctccgc tttctgtgcc tgtgagtaac ccatctcaat
     1021 cctcgcttga caatctgcat gacgacgata atactgaatt tgtggattat gttcaacatt
     1081 cagattgatg gcgcgtcgat acggccgatg cattctttag ccgcaaccgg gcggcgacca
     1141 atacaggaga aagacctatg cgtttcactg ataaaactgc cttgattacg ggcggaaaca
     1201 gcgggatcgg ttttgcggta gcgaagttat tgattgcgga aggtgctcgc gtggcgatca
     1261 cggggcgcga ccgcgcgaag ctggacgaag cggtgtccgc gctgggcgca aatgcgctcg
     1321 gcattaaggc ggatctggac gttcctgctg caatcgattc ggtaatcaag caagtcagcg
     1381 atgcctacgg ttcgcttgat atcgtgtttg cgaacgcggg gatttcaggg ccaacgccgc
     1441 tgggcggcac gaccgcagca gcgtttgagg caattctgcg caccaacctt acagcggtct
     1501 ttctgacggt tcaggcggcg ctgccgctga tgtcggcggg aggatcgatc gtgctcaacg
     1561 gttcggtcat gcgcgagctc ggccgggcgg gcacggcggc ttatgcggcg tcgaaggccg
     1621 gcatcaccgg catggcgaag gtgtttgccg gtgagctagt gcaacgcggc attcgcgtga
     1681 acacggtgat tcctgggggc actcgcacgc caatctggac ccgcggcgca cgggcgggcg
     1741 cgacgattga cggcacggaa caagcgttgt cgccggctat tccaatggga cgcttcgctg
     1801 ccgctgagga agttgcggag gcggttgcgt tcctcgcgtc ggacggtgcg tccggaatca
     1861 cggcggccga gattgtggtc gatggcggca cgatcggcgc gccatggggc gctccagcgc
     1921 ttcgcgcaag ctaagctcgc ggcaacgccc ggcgcaacac acgcaagggc gtggttgcgc
     1981 tgtacgacac gcactgcggg cacgcttagc gtccccgcag tgtctccgat ggcgattcgc
     2041 cgaacatcgc cttatagacc atcgagaaac gcccgagatg cgcgaaaccg caatcgaggg
     2101 caatctcggc gaccctcaca tccaaaggcg ccgcgcgcaa cgcatcgcgc gcgcgttcta
     2161 accgcaattg ccgcacatac tgcatggggc tcacgccgcg aaactgctga aagccgtcgc
     2221 gcagcgtgcg agccgagacg ccgacggcgt tggcaatatc gagcaattcc agcggctccc
     2281 ggcaatttgc ttcgatgaac gcctccgcgc gcttcacaaa gccgggtgag accagcgatc
     2341 gctgcgaagc gaagcccgac tctatttcgt tgcccacatg acccgtggcg aacagatcga
     2401 tcagcaaacc ttccaggtgc gccgccacac gcggactact gcgcgcgctc gcaagcaatt
     2461 cgggcgaact cgcgaccagt tgcaattgct gcatccagcc gcgtaaatgc gggctgccca
     2521 ccggcaccag cgcggcgaag tcctgagcgg ccaaacctgc gtgcgcgttc agcgctacag
     2581 gatcgatccg caggacaaac tgctcgcagc caggcgagag cagtgcatcg aaagcctgcc
     2641 ccggcgcaca taaaacgccc tgattacggt tgacctgcat ggaacgtccc atcgtgcgga
     2701 cttccgcgtt gccggtcacg caaaacatca tcaggtagta accgtctacc gactttacgt
     2761 tcacgcgcat ggcatcgccg aaagcgatcg tgccgagacc cagccctcca agcttgacga
     2821 aatccatgtg cgagcggccg cggcccgtgc ccgagggcac gagcgcgtgc ggctgcatca
     2881 cgcgcgagat cagctcgcgg gtttcatcga ggtcagtcga ttcgaataat cgatagcccc
     2941 gcaacgcgtc agcgcgaaag gcgccttgag acatggacgg taccggtcag tgaaaacaat
     3001 cacgacgaat gctaaggcag atagtaagtc acttcgccgt tctacccgag gctcctgccg
     3061 cccaacaccc ttcgtccggc gaaaacctgc cggaagtgga tagcgaagcc tgcgcgcagc
     3121 c
//
LOCUS       DATGBK010001696         2161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_344169, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001696 DATGBK010000000
VERSION     DATGBK010001696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344169"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..436
                     /locus_tag="VKJ77_23870"
     CDS             <1..436
                     /locus_tag="VKJ77_23870"
                     /inference="COORDINATES: protein motif:HMM:NF020650.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48377.1"
                     /translation="LRALGDERVGLTLWDAGVHLYAWPYYATQSTLQTRPDLLVRFLR
                     ATARGWHVCRTQPDRAIDYLMKDYPQLNREDERAALAIKLQCALDDETVANGWGTMNA
                     DRWQQQITQFDQLGQFSGHVPTVNEVMTTAILDKTRSVRMAV"
     gene            433..1269
                     /locus_tag="VKJ77_23875"
     CDS             433..1269
                     /locus_tag="VKJ77_23875"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006157924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC48378.1"
                     /translation="MNADTDMTAAQSPARGLRDAGDALTGHAISCRDIVVRFFSERRS
                     VTAISGLSLDVREGEFVTLLGPSGCGKSTLLRVVADLLSPSSGSITVLGDKPSRARAN
                     GNVAFVFQDAALMPWRTVLQNIELPLEIAGKSPRKHRVRTMELLDLVGLRGSENAYPN
                     ELSGGMRQRVSIARALIGNPKVLLMDEPFGALDEIVRDRLNDEIRRIWKETKLTILFV
                     THSIYEAAYLGERVLVLSANPGRVRDIVPVPLPYERTLEARETSEFVSLAARLRRTLE
                     TC"
     gene            1269..2102
                     /locus_tag="VKJ77_23880"
     CDS             1269..2102
                     /locus_tag="VKJ77_23880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48379.1"
                     /translation="MDAYSTPMNAPAASLAIDEARYLAEQRRLALQRRMLPVLGIVGL
                     LIAWWAVIAGFNIKPFIAPSPLLVMQTIIRRSDLLLQNLGVTAVEALFGFILGNLAAI
                     LVASVFVHSKILQWIFLPIAVAVNAIPVVAKAPILVLIMGNGMAPKITIAAMVCFFPT
                     LINTVRGLEAVNPQIMDLMRILSATRTQIYFKLRLFSALPYLFSALRIAASMCVIGAI
                     VGEWIGSTQGIGAQIIQATYNYDSPLLYAAIVMSACLSGLFYVVIALFEKRIVKWSAS
                     H"
BASE COUNT          401 a          616 c          678 g          466 t
ORIGIN      
        1 actgagggcg ttgggcgacg agcgagtcgg cctgacgtta tgggacgcag gcgtgcatct
       61 gtatgcgtgg ccgtactacg cgacccaatc cacgctccag acccgtccgg accttctcgt
      121 gcggttcctg cgggcgacag cgcgcgggtg gcatgtctgc aggacgcagc cggatcgcgc
      181 cattgactac ttgatgaaag attatccgca attgaaccgt gaggacgaac gggcggcgct
      241 ggccatcaag ctgcagtgcg cgctggacga cgaaacggtg gcgaacggct ggggcacgat
      301 gaacgccgac cgctggcagc agcagattac gcagtttgac cagttgggtc agttttccgg
      361 ccatgtaccc acggtgaacg aagtcatgac aacggccatc ctcgataaga cccggtcagt
      421 ccggatggcc gtatgaacgc ggataccgac atgaccgcag cccaatctcc ggcgcgcgga
      481 ttgcgcgatg ccggcgacgc gctcaccgga catgcgatca gctgtcgcga catcgttgtt
      541 cgtttttttt ccgagcgccg cagcgtgacc gcaatttccg ggctgtcgct ggatgtgcgg
      601 gagggtgaat tcgtgaccct gctcggtcct tccgggtgcg gcaagtcgac cttgcttcgg
      661 gttgtagccg atctcctgtc gcccagcagc ggttcgatca cggttctcgg cgacaagcct
      721 tcgcgcgctc gcgccaacgg gaacgttgcc tttgtcttcc aggatgcggc cttgatgccg
      781 tggcgaaccg tgctgcagaa cattgagctg ccgctcgaga tcgctggcaa aagtccgcgc
      841 aaacatcgcg tcaggaccat ggagctactg gatctcgttg ggctgagggg atcggaaaac
      901 gcctacccga atgaattgtc cggcggaatg cggcagcggg tttccattgc gcgtgcattg
      961 ataggcaatc ccaaggtctt gctgatggac gagcctttcg gtgcgctcga cgagattgtg
     1021 cgagatcgtc tgaacgacga gatccgcagg atatggaagg aaacaaagct gacgatcctg
     1081 ttcgtgacgc acagtattta tgaggcggct tatctcggcg aacgggtgct cgtcctgagc
     1141 gccaatcctg ggcgcgtgcg cgacatcgtc cccgttccgc tgccctatga acgcacgctc
     1201 gaagcgcggg aaacgtccga gttcgtgtcg cttgccgcca ggttgcgcag aacgctggag
     1261 acctgctgat ggacgcctac tcaactccca tgaatgcgcc ggcggcctct cttgcgatcg
     1321 acgaagcgcg ctatctggcg gagcagcgcc ggctcgcgct tcagcggcgc atgctgcctg
     1381 tgcttggcat cgtgggcctg ctgatcgcgt ggtgggccgt tatcgccggc ttcaacatca
     1441 agccttttat cgcgccgtct cccttgctgg tgatgcaaac catcatccgg agaagcgacc
     1501 tgctgctgca gaacctcggc gtgacggcag tggaagcact gttcgggttc atcctcggaa
     1561 acctcgcggc gatcctggtg gcgagcgtgt ttgtgcatag caagattctc cagtggatct
     1621 tcttgccgat agcggtagcg gtcaatgcga ttcctgtcgt cgccaaggcg ccgatcctgg
     1681 tgctgatcat gggcaacggc atggcgccga aaatcacgat cgctgccatg gtgtgcttct
     1741 tcccgacgct gatcaacacg gtgcgtgggc tggaggcggt gaatccgcag atcatggatc
     1801 tgatgcgcat cctgtcggca acgcgtacgc agatctattt caaactgcgc ctgttcagcg
     1861 cgctgccgta tctgttttct gcgttgcgga tagccgcctc gatgtgcgtg attggcgcga
     1921 tcgtgggcga gtggatcgga tcgacacaag gtattggcgc ccagatcatc caggctacct
     1981 acaactatga ctccccgttg ctgtatgcgg ccattgtgat gagcgcatgt ttatcgggtc
     2041 tcttctatgt ggtgatcgcg ctgttcgaaa agcggatcgt gaagtggtcc gcgtcgcact
     2101 gaggcggctc attcgttggt acacgcagca aggaaaaaaa tgactcttaa taataatttt
     2161 c
//
LOCUS       DATGBK010001697         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_275327, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001697 DATGBK010000000
VERSION     DATGBK010001697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275327"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..219
                     /locus_tag="VKJ77_23885"
                     /pseudo
     CDS             67..219
                     /locus_tag="VKJ77_23885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003058912.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            complement(237..1859)
                     /locus_tag="VKJ77_23890"
     CDS             complement(237..1859)
                     /locus_tag="VKJ77_23890"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48380.1"
                     /translation="MGAKSGPTLEANSQSADSSPWRPLHNALFRSLWIATIVSNIGTW
                     MQDVGSGWLMTSLSASPSMVALVEAADSFPVMLLALPAGALADIVDRRRLLIAIQFYL
                     LLVAGTLGILTWMEAVTPWVLIGFTIALGVGAALVMPAWAAIVPDLVPIDDMPAAIAL
                     NSVGINVSRAIGPAIAGVLVAATGPWLVFMLNALSYVGILAVLLRWQRVHRKSALPAE
                     RFLSAVRVGMRFVMHTRALQVVLIRGSAFFVFAAATWSLFPLIVRRELGQGPEIYGAL
                     LTCIGIGAVAGAMLLPRVRARISRDALVAGASALYALAALALAHVHNVPLLAVAMLMI
                     GLAWISILSALQVAAQMTLPPWVRARGLAAFVVVFMGGMALGSVLWGQVATRIGIPAA
                     LTTAALGMVLAIGLTWRYKLGRHEVHDFSPSLHWPAPLLAENPEPDQGPVMVTIEYRV
                     QADKRREFVAAMQAVGEMRRRNGAYYWELFHDSGDPTRFAECFMDESWIEHLRQHERV
                     SVADREIQREAKQFMVEGESTKSSHWLADRDS"
BASE COUNT          467 a          660 c          613 g          312 t
ORIGIN      
        1 ggattatgcg tgcgaccgcg attccgatca aacgacattt gagaatcgtt cgcatgagtt
       61 taatgaatgc aagaacagcg ccgtagcctg ccatccctgg acctgttgcg cgggttcgag
      121 gccgccgcgc gcaacctgag cttcaccaaa gcggcggccg aactgttcgt cacccagtcc
      181 gccgtcagcc ggcaggtgaa gaccatcgaa gagcacgttg gcccagcgcc cgcggatcag
      241 gagtcccgat cggcgagcca gtgcgaggac ttcgtcgatt cgccttcgac cataaactgt
      301 ttcgcctcgc gctgaatttc ccgatcggcg acactgacgc gttcgtgctg ccgcagatgc
      361 tcgatccagg attcatccat gaagcattcc gcgaaccgtg tcggatcacc cgagtcgtga
      421 aacagctccc agtagtacgc tccgttgcgg cggcgcattt cgcccaccgc ctgcatcgcg
      481 gcgacgaact cgcgacgctt gtcagcttgc acccggtact cgatcgtgac catcaccggt
      541 ccctgatcgg gttcgggatt ttcggcaagt agcggcgccg gccaatgcag ggacggactg
      601 aaatcgtgta cctcgtgacg acccagcttg tagcgccagg tcaatccaat cgcgagtacc
      661 attccgaggg ccgctgtcgt cagtgcggcc ggaatgccga tacgggtcgc gacctgtccc
      721 cacaaaacgc tgccgagcgc catccctccc atgaacacga cgacgaaggc ggcgaggcca
      781 cgcgcgcgca cccacggggg caaggtcatt tgagcggcga cctggagcgc cgaaagaatc
      841 gagatccacg cgaggcctat catcagcatg gcgactgcca gcaatgggac attgtgcaca
      901 tgcgcgaggg cgagcgcggc aagcgcatag agcgcgctcg cacctgcgac cagcgcatcg
      961 cgggagattc gggcccgcac acgcggcagc agcatggcgc ccgccacggc gccgatgccg
     1021 atgcaagtga gcaaggcacc gtagatttcc ggaccttgcc ccaattcccg cctgacgata
     1081 agagggaaca gcgaccacgt cgcagcagcg aaaacaaaaa acgcacttcc gcggatgagc
     1141 acaacctgca gcgcgcgggt atgcatgacg aaacgcatgc ccacgcgcac ggcactcaga
     1201 aaacgttccg ccggcagtgc gctcttgcga tgcacgcgct gccaccgcag cagcaccgca
     1261 aggatgccga cgtaggacaa ggcattgagc atgaagacca gccacggtcc tgtcgcggcc
     1321 accagaacgc cagcgatggc cggtccgatc gcgcgcgata cgttgatgcc aacgctgttg
     1381 agagcgatgg cggcgggcat gtcgtcgatg ggcaccaggt cagggacgat cgcggcccat
     1441 gcgggcatca ccaatgccgc gccgacgcca agggcaatag tgaatccgat gagcacccac
     1501 ggagtcacgg cttccatcca ggtgaggatc cccagagtgc cggcaacaag gagcaagtag
     1561 aactgaatcg caatcagcag ccgtcgacga tcgacgatgt cggcgagcgc acctgcggga
     1621 agagcgagaa gcatcaccgg aaaactgtcc gcggcttcca ccagcgccac catcgagggc
     1681 gatgcggaaa gcgaagtcat caaccagccg gacccgacat cctgcatcca ggtcccgatg
     1741 ttggagacga tggtggcgat ccacaggctg cgaaagagcg cgttgtgcaa ggggcgccat
     1801 ggcgaactat ccgcgctctg tgaattcgct tccaatgttg gccccgattt cgcgcccaac
     1861 gactacggtg gtgaaaagtc ccatactgac aagaaagcaa atatcattgc acctgaccaa
     1921 agtcaaccgc ccgcgcgaaa aaggggcaac acccgacgcg aaatcacatc tgcacagtgc
     1981 cggatcggct aaagtaacgc catgacgacc tcgaaacgcg cgccgcatgt ccgccgtctc
     2041 ccctgataag cg
//
LOCUS       DATGBK010001698         1904 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_112832, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001698 DATGBK010000000
VERSION     DATGBK010001698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112832"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(240..1046)
                     /gene="eutC"
                     /locus_tag="VKJ77_23895"
     CDS             complement(240..1046)
                     /gene="eutC"
                     /locus_tag="VKJ77_23895"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008851 - ethanolamine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
                     /protein_id="HMC48381.1"
                     /translation="MADFDDHPSSVSTNPWDALRRFTNARIALGRAGSSLPTAPLLAF
                     NLSHAQARDAVHQPLDVAALHASLSAAGFDTLDAESAAPDRDHYLRRPDLGRKLNDES
                     AARLRDYAAAAPAAFDVLFVVADGLSAYAAAGHAVPLLERMRAKLAGVSIGPIVIATQ
                     ARVALGDGIGELLRARIVVMLIGERPGLSSPDSLGIYLTYEPRIGKSDAERNCISNVR
                     PQGLDYDAAAFKLHYLLTEARRLKLTGVKLKDDSDALLPSASSPGSVLET"
     gene            complement(1046..>1904)
                     /locus_tag="VKJ77_23900"
     CDS             complement(1046..>1904)
                     /locus_tag="VKJ77_23900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HMC48382.1"
                     /translation="ASMLDGLMYGCGDAMIGINPASDSLSAITTLLLMIDDFRQRYEV
                     PTQSCVLTHVTNTIAAIEKGAPVDLVFQSIAGTEKANSSFGVSLALLQEAHEAGLSLK
                     RGTVGNDLMYFETGQGSELSANAHYDVDQQTCEVRGYAVARKFSPLLVNTVVGFIGPE
                     YLYDGRQIIRAGLEDHFCGKLLGVPMGCDICYTNHAEADQDDMDNLLTLLGVANVNFI
                     MGIPGADDVMLNYQSTSFHDALYVRNVLGLRRAPEFEAWLESMRIADPRGKLLNPSAT
                     QPLLEWMSA"
BASE COUNT          402 a          583 c          560 g          359 t
ORIGIN      
        1 cttataaccc cgggtatttg tcgctgcagt cgcattgcgt gccgggaagc gaaatggtgg
       61 cgggcgggga ggcgggcgcg actaacgcag cgcgtccggc gactgttaca cggtagagcc
      121 gatacgaacg acacaacgga acgacgcaac gtccgccacc gtctgggatc gaatgggatc
      181 gcacagccac gccgccacca gcgccgaggc tgcccgtcca tcacctcgta gcgcccgagc
      241 taggtttcca acaccgagcc cggcgagctt gccgatggca gcaacgcatc gctatcgtct
      301 ttgagcttga cacccgtgag cttcagacgc ctcgcttcag tcaacaggta atgcagcttg
      361 aacgctgccg cgtcgtagtc aagtccttga ggccgaacat ttgaaataca gttgcgctcc
      421 gcgtcgcttt tgccgatgcg cggttcatag gtcaggtaga taccaagact atcgggtgaa
      481 ctcaaacccg gccgttcacc aatcagcatc actacaatcc gtgcccgtaa aagctcaccg
      541 ataccatcgc cgagtgcgac ccgcgcctgc gtggcgatga cgatcggacc aatgctgacg
      601 ccagccagct tcgcgcgcat ccgttcgagc agcggtaccg catgacccgc ggcggcgtag
      661 gccgacaaac catcggcgac aacgaacagg acatcgaacg cagcgggtgc tgctgccgcg
      721 tagtcgcgca gccgtgccgc gctttcatcg ttcagttttc tgcccagatc cgggcgccgc
      781 agataatgat cgcgatcggg ggcggcgctt tccgcatcga gcgtatcaaa acccgctgca
      841 ctcaatgatg catgcagggc ggctacatcg agcggttgat gcacggcgtc gcgggcttgc
      901 gcatgcgaaa gattaaacgc aagcaatggc gccgtgggca ggctgctgcc cgctcgtccc
      961 aacgcaatgc gtgcgttggt gaaacggcgc aacgcgtccc acggattggt gctgacggaa
     1021 gaagggtgat cgtcgaaatc agccatcagg cgctcatcca ttcaagcaac ggttgcgttg
     1081 cggacgggtt caataacttg ccgcgcggat cggcgattcg catcgattca agccaggcct
     1141 cgaactccgg cgcgcgccgc aagccgagca cattgcgaac atacagcgcg tcgtggaatg
     1201 acgtgctttg ataattgagc atgacgtcat ccgcgccggg aatgcccatg atgaaattga
     1261 cattggcgac accgagcagc gtgagcaggt tgtccatgtc gtcctgatcg gcttcagcgt
     1321 gattcgtgta gcagatgtcg catcccatgg ggacaccgag cagcttgccg cagaagtgat
     1381 cttccagtcc ggcgcgaatg atctgccggc cgtcgtacaa atactcgggg ccaataaaac
     1441 cgaccaccgt gttcaccagc agtgggctga acttgcgcgc gactgcgtaa ccgcgcactt
     1501 cgcaagtttg ctgatcaacg tcgtaatggg cgttcgcgga caactcactg ccttgacccg
     1561 tttcgaaata catcaggtcg ttgccaacgg tgccgcgttt cagcgacaac cccgcttcat
     1621 gcgcttcctg aagcagcgcc agcgagacgc caaaactgct gttcgctttc tcggtgcccg
     1681 caatcgactg gaacacgaga tcgaccggcg cgcctttctc gattgcagca atcgtgttgg
     1741 tcacatgcgt gagcacgcat gattgcgtcg ggacttcata gcgctgccgg aagtcgtcga
     1801 tcatcaggag cagcgttgtg atcgcactca acgaatccga tgccggattg ataccgatca
     1861 tcgcgtcgcc gcagccgtac atgaggccgt cgagcatcga cgcg
//
LOCUS       DATGBK010001699         3368 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_89387, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001699 DATGBK010000000
VERSION     DATGBK010001699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3368
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89387"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VKJ77_23905"
     CDS             complement(<1..299)
                     /locus_tag="VKJ77_23905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006757435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HMC48383.1"
                     /translation="MFSVTYAQLNVWLTSFLWPFTRILALIATAPLLSHQAIPIRVKV
                     AVAAFIALIVAPTIGAVPQVTVFSADGVMIIINQFLIGAALGMTMQIAFAAIDAAG"
     gene            complement(302..571)
                     /gene="fliQ"
                     /locus_tag="VKJ77_23910"
     CDS             complement(302..571)
                     /gene="fliQ"
                     /locus_tag="VKJ77_23910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HMC48384.1"
                     /translation="MTPESVMSIAHQAMYVALLLAAPLLLVALVVGLVVSLFQAATQI
                     NESTLSFIPKLLAVALTLVIAGPWMLETLLDYMRHVFTITPAITG"
     gene            complement(629..1396)
                     /gene="fliP"
                     /locus_tag="VKJ77_23915"
     CDS             complement(629..1396)
                     /gene="fliP"
                     /locus_tag="VKJ77_23915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402291.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HMC48385.1"
                     /translation="MQARFFARCVRLAVPVVMLALPYTAFAQSTAGLPAFNTSPGPNG
                     GTTYSLSVQTMLLLTMLSFLPAMLLMMTGFTRIIIVLSLLRQALGTNTTPPNQVLVGL
                     ALFLTLFVMSPVLDKAYVDAYKPFSDGTITMDQAMTRGVAPFKQFMLRQTREADLALF
                     ARIAKAPPMNGPEDVPLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMG
                     MMMVSPTTISLPFKLMLFVLVDGWQLLIGSLAQSFVS"
     gene            complement(1396..1932)
                     /gene="fliO"
                     /locus_tag="VKJ77_23920"
     CDS             complement(1396..1932)
                     /gene="fliO"
                     /locus_tag="VKJ77_23920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliO"
                     /protein_id="HMC48386.1"
                     /translation="MKRFAAALAALAALAMTLAAHTAHAADMNAVNHAAQIASGVGAG
                     TAVPSLGVGAVLQTLLGLAIVIAFVFGCAWLARKFGVAGTKRTGLVKVIGGASLGNKE
                     RVSVVEIGDTWLVLGAAPGNVRLLHTMPAGSMELNGTEAGVTPEGQALQGSFGQRFRD
                     ALAGEATKRLQKFAGGSK"
     gene            complement(1929..2366)
                     /gene="fliN"
                     /locus_tag="VKJ77_23925"
     CDS             complement(1929..2366)
                     /gene="fliN"
                     /locus_tag="VKJ77_23925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HMC48387.1"
                     /translation="MSDVTEPGTLPSNPLKSEDFGMDDWASALAEQNGNETPAAASSA
                     GLFQPLSKVEAPSTRNDIDMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAG
                     EPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPSERIRKLNR"
     gene            complement(2359..3357)
                     /gene="fliM"
                     /locus_tag="VKJ77_23930"
     CDS             complement(2359..3357)
                     /gene="fliM"
                     /locus_tag="VKJ77_23930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004524547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HMC48388.1"
                     /translation="MGHEEFMSQEEVDALLKGVTGEVDAVADETRFHGVRPYNLATQE
                     RIVRGRMPGLEIINDRFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNL
                     NLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGREFTQTEQRIISKLLNL
                     VFEHYAASWKSVRTLNFEYVRSEMHTQFANVATPNEIVIVTQFSIEFGTTGGTLHICM
                     PYSMIEPIRDILSSPIQGEALEVDRRWIRVLSQQVQAAEVELTVDLAEIGTTFEKILN
                     MRAGDVLPINVPELVTAKVDGVPVMECGYGIFNGQYALRVQKMISATDTMKEGGYE"
BASE COUNT          685 a         1016 c         1040 g          627 t
ORIGIN      
        1 cccgcggcat cgatggcagc gaacgcaatc tgcatggtca tgccgagcgc cgcgccgatc
       61 aggaactggt tgatgatgat catcacgcca tcggcggaaa ataccgtcac ctgcggaacc
      121 gcgccgatag tcggcgccac gatcaacgcg ataaacgcgg ccaccgcgac cttgacgcga
      181 atcggaatgg cctggtggct gagcagcggc gcggttgcaa tcagcgcgag gatgcgcgtg
      241 aacggccaga ggaacgacgt cagccagaca ttgagctgcg cgtaagtgac ggagaacatc
      301 gttagccggt gatggcgggc gtgatggtga aaacgtggcg catgtaatcg agcagcgttt
      361 ccagcatcca cggaccggcg atcacgagcg tgagcgccac ggcgagcaat ttcggaatga
      421 acgagagcgt gctttcgttg atctgggtcg cggcctggaa caggctcacc accaggccga
      481 ccacgagcgc gaccagcaac agaggagccg cgagcaacag cgccacatac atggcctggt
      541 gcgcgatcga catgacggat tcgggtgtca tcgtgtaatt cctgacgcta gatacggagg
      601 ctatgaaacg gaggctatgg agcgaaggct atgaaacgaa gctctgcgcg agtgagccaa
      661 tcagcaactg ccagccgtcc accagcacga acaacatcag cttgaacggc aacgaaatgg
      721 tggtgggcga caccatcatc atccccatcg acatcagcac gctcgccacc accatgtcga
      781 taatcaggaa cggaatgaag atggtgaagc cgatctggaa gcccgtcttg agttcgctgg
      841 ttacaaacga tggcaccagt agcgaaagcg gcacgtcttc gggaccgttc attggcggtg
      901 ctttggcgat ccgggcgaac agcgcgagat cggcttcgcg ggtctggcgc agcatgaatt
      961 gcttgaacgg cgcgacgccg cgcgtcatgg cctggtccat cgtgatcgtg ccgtcggaga
     1021 aaggcttgta cgcatcgaca taagccttgt cgaggaccgg cgacatcacg aacagcgtga
     1081 gaaacagcgc gagtccgacg agcacctgat taggcggagt ggtattcgtg cccagcgcct
     1141 gccgcaacag cgacaacaca atgatgatgc gcgtgaagcc cgtcatcatc agcagcatgg
     1201 ccggcaggaa cgacagcatc gtgagcagca gcatcgtctg gacgctgagc gaatacgtcg
     1261 tgccgccgtt cgggccaggg ctggtgttga acgcgggaag tcctgcggtg ctttgggcga
     1321 aagcggtgta gggaagggcc agcatgacga cgggtactgc gagtctcacg caccgggcaa
     1381 aaaaacgagc ctgcattact tgctcccgcc tgcgaatttt tgcagacgtt tggtcgcttc
     1441 gccggcgagg gcatcgcgaa aacgttgacc gaaactgcct tgcagcgctt gaccttcggg
     1501 tgtgacgccg gcttccgtgc cgttgagttc catcgatccc gccggcatgg tgtgcagcag
     1561 ccgcacatta ccgggcgcgg cgccgagcac gagccacgta tcgccgatct ccaccaccga
     1621 gacgcgctcc ttgttgccaa gcgacgctcc gccgatcacc ttcaccagcc ccgtgcgctt
     1681 cgtgccggcc acgccgaact tgcgtgcaag ccacgcgcag ccgaacacga acgcgatcac
     1741 gatcgcgagg ccgagcagcg tctgcagcac cgcgcccacg ccgagtgacg gcacggccgt
     1801 gcccgcgcca acgcccgatg caatctgcgc cgcatgattg acggcgttca tgtcggcggc
     1861 gtgagcggtg tgggcggcaa gcgtcatggc aagcgctgcc aatgctgcaa gcgcggcggc
     1921 aaagcgtttc atcgattcaa cttcctgatg cgttcggacg gcgtgatgat gtcggtgaga
     1981 cggataccga acttgtcgtt gaccaccacg acttcgccct gcgcgatcag gcagccgttg
     2041 accagcacgt ccatcggttc gcccgccagg ccgtcgagtt caaccactga accctgcgcc
     2101 agttgcagca ggttgcggat tgcgatcttg gtccgcccga gttccaccgt catctgcacg
     2161 gggatgtcga gaatcatgtc gatgtcattg cgcgtcgagg gcgcctcgac tttcgacaag
     2221 ggctggaaca gtcccgccga tgaagccgcc gccggcgttt cattgccgtt ctgctcagcc
     2281 agcgcgctcg cccagtcgtc catgccaaag tcctcgctct tgagcggatt ggacggcagc
     2341 gtgcccggtt cagttacgtc actcatatcc accttccttc atcgtgtcgg ttgcgctgat
     2401 catcttctgg acgcgcaacg cgtattgacc attgaaaatt ccgtagccgc attccatcac
     2461 cggcacccca tccacttttg ccgtgaccaa ttcggggacg ttgatcggca ggacatcgcc
     2521 cgcgcgcatg ttgagaatct tttcgaaggt cgtgccgatc tccgccagat ccaccgtgag
     2581 ttccacttcg gccgcctgca cttgctgcga cagcacgcgg atccagcggc gatcgacttc
     2641 gagcgcttcg ccttgaatgg gcgaggagag gatgtcgcga atgggttcga tcatcgaata
     2701 cggcatgcag atatgcagcg tgccgccggt cgtgccgaat tcgatggaaa actgcgtgac
     2761 gatcacgatc tcgttcggcg tggccacgtt ggcgaactgc gtgtgcattt ccgagcgcac
     2821 gtattcgaag ttaagcgttc gcacgctttt ccacgatgcc gcgtagtgtt cgaacacgag
     2881 gttcagcagc ttgctgatga tgcgttgctc ggtctgcgtg aactcgcggc cttcaacgcg
     2941 cgtgtggaaa cggccgtcgc cgccgaagag gttatcgacg acaaagaaca ccaggttcgg
     3001 atcgaacacg aacagcgagg tgccgcgcaa cggtttcacg tggacgaggt tcaggttcgt
     3061 cgggatcggc aggttgcggg tgaattcgct gtacttctgc accttcaccg gaccgaccga
     3121 gatttccgcc gaacgccgca tgaagttgaa gatgcccacg cgcaaaaggc gcgcgaaccg
     3181 gtcgttgatg atttccaggc ccggcatccg gccccggacg atgcgttcct gcgtcgcgag
     3241 gttatagggt cgcacgccat ggaagcgtgt ttcgtcggcg actgcgtcga cttccccggt
     3301 gacgcccttg agcagggcat ccacctcctc ctgcgacatg aactcttcgt ggcccatgag
     3361 tgttcctt
//
LOCUS       DATGBK010001700         1732 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_43699, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001700 DATGBK010000000
VERSION     DATGBK010001700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43699"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..460)
                     /locus_tag="VKJ77_23935"
     CDS             complement(<1..460)
                     /locus_tag="VKJ77_23935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011486560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC48389.1"
                     /translation="MATTIRDVARAASVSIGTVSRALKNQPGLSETTRERVVEAARQL
                     GYDAAQLRTRIRRVTFLLHRQHNNFAVSPFFSHVLHGFEEACRERRLVPSVLTAGPTH
                     DLAQQMRLHAPDAVAVAGFIEPELLAHLRSMNRPVVLIDLRAPGFRSVNVD"
     gene            complement(707..1339)
                     /locus_tag="VKJ77_23940"
     CDS             complement(707..1339)
                     /locus_tag="VKJ77_23940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013539149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009312 - oligosaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009877 - nodulation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HMC48390.1"
                     /translation="MTMEPNTQEPAQQPNAQDYFAGLYQRSDDPWLLRERWYERRKRA
                     LTLAALPDEHYRRAYEPGCANGELTVGLAPRCETLLAADLNPVAVNLARKRVAHFPNV
                     KVEQRAMPNDWPEGEFDLIVISEVAYYLNEAQLAGLITRLTVSLAGGGTLIACHWRQP
                     IEGWPHSGDHVHRELRAKLTLPRLSCYRDDDMVLDVWSPNAKSTHQREAR"
     gene            complement(1336..>1732)
                     /locus_tag="VKJ77_23945"
     CDS             complement(1336..>1732)
                     /locus_tag="VKJ77_23945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HMC48391.1"
                     /translation="DGGGETFEPEVADALRAHLEPGDIVFGTWRFDGHPDHESVGRAV
                     TTVAGELDLPFVEVPVWTWHWATPEDSRVPWSRARRIVLDAATLAHKVHAVQAFKSQI
                     EADGSTGRAPILPEHVLERLTRPYEVVLI"
BASE COUNT          330 a          512 c          533 g          357 t
ORIGIN      
        1 tgtcgacgtt gaccgagcga aaaccgggcg cgcgcaaatc gatcagcacg accggccggt
       61 tcatggagcg cagatgcgca agcagctccg gctcgataaa tcccgcaacc gcaacggcgt
      121 ccggtgcgtg gaggcgcatc tgctgggcga gatcatgcgt cgggccggct gtcagtactg
      181 acggcaccag ccgccgctcg cggcaggctt cttcgaaacc gtgcagcacg tgagaaaaga
      241 acgggctgac cgcgaaattg ttgtgctggc gatgaagcag gaatgttacc cgtcggattc
      301 gggtgcgaag ctgggcggcg tcgtagccaa gttgtcgcgc cgcttcgacc acgcgttcac
      361 gcgtagtttc cgacaggccc ggctggtttt taagcgctcg cgacaccgtg ccgatcgaca
      421 cactggctgc gcgcgcaaca tcgcgaatgg tggtggccat cgggtttctc gtctctgctt
      481 tgcgtggatt tgttgttatc ggcgcagatg cgtcgtagac acgtgaagtg tttactaacg
      541 aggtcaggtt cgcacgattt tggcgattgt atagtaaaac atcgcgaaaa cttacccgag
      601 ggatcttgga gaaaacccgt aagctgtttg ttgataaggc tttcagttag ctttattgtt
      661 tagtcaatgt agcgggaaaa ttcaaagtaa caggcgttcg caggcactat cgcgcttctc
      721 gttgatgagt agatttcgca ttcggtgacc atacgtcaag caccatgtca tcgtcccggt
      781 agcacgataa ccgcggtagc gtgagttttg cgcgaagttc tcgatgtaca tggtcacccg
      841 aatgcggcca tccctcgatt ggctgccgcc aatgacaggc gatcagcgtt ccgccaccgg
      901 cgagtgaaac cgtcagcctc gtaatgagcc cggctagctg cgcttcattc aggtaatacg
      961 ccacctcgct gattacgatc aggtcgaact cgccttccgg ccaatcgttg ggcatggcgc
     1021 gctgctcgac cttaacgttt ggaaaatgcg cgactcgctt gcgcgcaaga ttgaccgcga
     1081 ccggattcaa gtccgccgcg agcagcgtct cgcatcgagg cgccagccca actgtcagtt
     1141 cgccgttcgc gcagcccggt tcatacgcgc gacggtagtg ctcatcggga agggcggcca
     1201 gcgtcagcgc gcgcttgcgc cgctcgtacc agcgttcgcg aagtagccag gggtcgtcgc
     1261 tgcgctgata gagaccggcg aaatagtcct gtgcgttcgg ctgctgcgcg ggttcctgcg
     1321 tgttcggttc catcgtcata tcagcacgac ctcatagggc cgggtgagac gttcaagcac
     1381 gtgctcgggc aggatgggcg cgcgacccgt cgacccgtct gcttcgatct ggcttttaaa
     1441 cgcctggacc gcgtgaacct tgtgggcaag cgtagccgca tccagcacga tgcggcgggc
     1501 acggctccag ggcacgcggg aatcctcggg tgtcgcccag tgccaggtcc acactggcac
     1561 ttccacgaac ggcaggtcaa gctcgccagc cacagtggtc acggcccggc cgacggactc
     1621 gtggtcggga tggccatcga aacgccaggt cccaaacaca atgtcgcccg gttcgaggtg
     1681 cgctctcagc gcatctgcga cttccggttc gaacgtttct ccgccgccgt ct
//
LOCUS       DATGBK010001701         3388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_251389, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001701 DATGBK010000000
VERSION     DATGBK010001701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251389"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VKJ77_23950"
     CDS             <1..210
                     /locus_tag="VKJ77_23950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HMC48392.1"
                     /translation="ALRALFATLLEVDPDAVGDDDDFFELGGDSLLVIKLVARIRRTL
                     SLEVSPGDVFDHPTVTSLARFLERA"
     gene            359..2623
                     /locus_tag="VKJ77_23955"
     CDS             359..2623
                     /locus_tag="VKJ77_23955"
                     /inference="COORDINATES: protein motif:HMM:TIGR01783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HMC48393.1"
                     /translation="MARQQSERRGADRIGARGRAKNPWRLAPIAAGVLLASSAFAQSD
                     AVVPADGSGQPAASASPGQQLPAVVVKGQRDAETGTGPVKGYVAKQSTAGSKTDTPII
                     KTPQAISVVTRDQMDIQDAQSVAQALRYTSGINPEQRGTNTDSLEYLYARGFLVDEFW
                     NGLRTPGPAGGFGFNVTSFDPYMFERIELLHGPASVLYGQGSPGGTVNLVSKMPTAEP
                     LHEVGFQTGSYGRLQGFFDFSGPIDQDGKVLYRLTADGFNTATQTDYVNQQRFAISPT
                     ITWKPTKDTTFTVFANYQADPEAGIYNTVPAVGTIQTGVSQLSRSFYPGEPTFDSFRK
                     TQESIGYQLDHRLNDIWSFKQSYRFLHNSQTVKYVADDLGYTNNGTELAREAYLNSGR
                     LNSHTLDNQATARFNTGPVSHTATVGVDYQNTQFDHVFYGSSDDNVPSLSITNPQYGQ
                     TIPYPTFMFGTSNKQSIKQLGTYAQDQIDIDRWSFLLGVREDWTNEDSQSYKTGAQTS
                     QFNRAFTWRAGGVYKFDNGFAPYVSYTTSFQPQVGSTASGTAFSPTTAQQYEIGVKYQ
                     PKNYNSFVTVSAFHLTQQNVLTTDPTNSNFQVQTGEVRSQGFEVEAHASLTNNLQLIF
                     SYTYTNLLNTKSNTSNLDKVPLGIPRNTASLWADYTVTSGLLNGVQAGAGLRYIGGSY
                     GDTANTLLLSSATLVDLALRYDLGRAFPSMHGWTASLNASNLLNRAYMASCSNGSCYW
                     GQGRLVLAGLKYQW"
     gene            2646..>3388
                     /locus_tag="VKJ77_23960"
     CDS             2646..>3388
                     /locus_tag="VKJ77_23960"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HMC48394.1"
                     /translation="MRSFSTKALTTPGEQAGPQPLSPAQEGLWFVQRLAPLSTAYHLA
                     RVFHLRGRADISALEQALNVVRARQAVLRTRFAERDGKPFQIVDAPADVPLPLTDLSS
                     LQADARDEALAEALAHEAQQPFDLAAEGAIRLRVFAMSAQWNVLSVVAHHLVTDGTST
                     AIFARELAHAYGRIVRDETVPELPGLTWQYADFAAWQRDMLASDKARVDVAWWTEYIG
                     SPHAGFELPVDFTRAPTQQRQARTHTFTLT"
BASE COUNT          700 a         1035 c         1004 g          649 t
ORIGIN      
        1 gccctgcgcg cgctcttcgc aacgctgctg gaggtcgatc cggacgcggt cggcgacgat
       61 gacgacttct tcgagctggg cggcgactcg ctgcttgtca tcaagttggt ggcccgcatt
      121 cgccgcacgc tcagccttga agtctcaccc ggcgacgtct ttgatcaccc gaccgtaacc
      181 agccttgccc gctttctcga acgtgcctga ctgacccgat cgacgcccgt cgcgatagac
      241 ccacacgata gtcagggaaa ttttacacag aaaacctgtc atcgatataa ttatgtatta
      301 gcaatcattc gcattatcat tatcgttcac aacctaacca caccaaccgc aagagaccat
      361 ggcacgacaa caatcagaac gacgcggcgc agaccgtatc ggggcgcgcg ggcgcgcaaa
      421 gaatccctgg cggctcgcgc cgatcgcagc gggcgtgttg ctggcgtcct ctgcgtttgc
      481 acaaagtgac gctgtcgtgc cggcggacgg atcaggtcag ccggccgcat cggccagccc
      541 gggacaacag ttgccggctg tggtggtgaa gggtcaacgc gatgcggaaa cgggtacggg
      601 accggtgaag ggttacgtgg cgaagcagag cacggcgggt tccaagaccg acacgccgat
      661 catcaagacg ccgcaggcga tctcggtggt gacgcgcgac cagatggaca tccaggacgc
      721 gcagagcgtg gcgcaggcgc tgcgctatac gtccggcatc aacccggagc agcgcggcac
      781 caataccgat tcgctcgagt acctgtatgc gcgcggtttt ctcgtcgatg agttctggaa
      841 cggtttgcgc acgccgggtc cggccggcgg ttttggcttc aacgtgacga gcttcgatcc
      901 gtacatgttc gagcgtatcg agttgctgca cggaccggcg tcggtgttgt acggacaagg
      961 ttcgccgggt ggcacggtga acctggtgag caagatgccg acggcggagc cgctgcacga
     1021 agttggattc cagacgggca gctatgggcg cctgcagggg ttcttcgact tcagtggtcc
     1081 tatcgatcaa gacggcaagg tgctttaccg tttgacggcg gacggtttta ataccgccac
     1141 gcaaacggac tacgtgaacc agcagcgttt cgcaatctcg ccgaccatca cgtggaagcc
     1201 aacgaaagac accacgttca cggtctttgc gaactatcag gcggaccccg aggcgggtat
     1261 ctacaacacc gtgccggcgg tgggcacgat ccagaccggt gtgtctcagt tgtcgcgcag
     1321 cttctatccc ggcgagccga ccttcgacag cttccgcaag acgcaggagt cgatcggata
     1381 ccagttggat catcgtttga acgacatctg gtcgttcaaa caaagctatc gtttcctgca
     1441 caacagccag accgtgaagt atgtggccga cgacctgggc tatacaaaca acggtacgga
     1501 actggcgcgc gaagcgtacc tgaacagcgg ccgcttgaac tcgcacacgc ttgacaacca
     1561 ggcgaccgcg cgtttcaaca cgggacccgt gtcgcatacg gcgaccgtgg gtgtcgacta
     1621 tcagaatacc cagttcgacc acgtcttcta cggatcgtcg gacgacaatg tgccgtcgct
     1681 cagcatcacg aatccgcaat acgggcaaac cattccgtac ccgaccttca tgttcggcac
     1741 gtcgaacaag cagtcgatca agcagcttgg cacgtacgcg caggaccaga tcgacatcga
     1801 ccggtggtcg ttcctgctgg gcgtgcgcga agactggacg aacgaagata gccagtcgta
     1861 caagacgggg gcgcagacga gccagttcaa ccgcgcgttc acctggcgtg ccggcggcgt
     1921 atacaagttc gacaacggat ttgcgcctta cgtgagctac acgacgtcgt tccagccgca
     1981 agtcggctcg accgcctcgg gtacagcgtt ctcgccgact accgctcagc agtacgagat
     2041 cggcgtgaag tatcaaccga agaattacaa cagctttgta acggtatcgg cgttccacct
     2101 gacgcagcaa aacgtcctga ccacggaccc gaccaacagc aacttccagg tgcagaccgg
     2161 cgaagtgcgg tcgcagggtt tcgaggtcga agcccatgcg agcctgacca acaacctgca
     2221 attgatcttc agctacacgt acacgaacct gctgaacacg aagagcaata cctcgaacct
     2281 cgacaaggtg ccgctcggta ttccgcgtaa taccgcttcg ctgtgggcag actatacggt
     2341 gaccagcggg ctgctcaacg gcgtacaagc gggtgccggc ctgcgttata tcggcggttc
     2401 atacggcgat acggcgaaca cgctcctgct ctcgtcggcc acgttggtcg accttgcgtt
     2461 gcgttatgac ctcggccgcg cgttcccctc catgcacggc tggactgcct cgctcaatgc
     2521 aagcaacctg ctcaaccgcg cttacatggc gtcgtgcagc aatggttcct gctactgggg
     2581 acaaggtcga cttgtactcg cgggattgaa gtatcagtgg taattcatca ggaggcaggg
     2641 cgccgatgcg gtctttttcg acgaaagctt taacgacgcc cggcgagcag gccggacccc
     2701 agccgctttc tcctgcgcag gaaggactct ggttcgtgca gcggctcgcg ccgctgtcca
     2761 ctgcctacca tctcgcgcgc gtttttcact tgcgcggacg ggccgatatc agcgcgcttg
     2821 aacaggcgct gaatgtcgtg cgtgctcggc aggcagtatt gcgcacccgt tttgctgaac
     2881 gagacggcaa gccatttcag attgtcgatg caccggctga tgtgccgttg ccactgaccg
     2941 atctttcctc gcttcaagcc gatgcacgtg acgaagcgct ggcagaagcg cttgctcacg
     3001 aggcgcagca gccgttcgac ctcgccgcgg aaggtgcgat ccgcttgcgg gttttcgcga
     3061 tgtcggcgca atggaatgtg ctgtccgtcg tggcgcatca tctcgtcacc gatggaacgt
     3121 ctactgcgat cttcgcgcgt gaactcgcac acgcgtacgg ccggatcgtg cgtgatgaaa
     3181 cggttcctga attaccaggc ctgacttggc agtacgccga ttttgccgcg tggcaacgcg
     3241 acatgctggc aagcgacaag gcccgcgtcg acgtggcgtg gtggaccgaa tacattggct
     3301 cgccccatgc aggcttcgaa ctacccgtcg atttcacacg agcgccgact cagcaacgtc
     3361 aggcgcgtac ccacaccttc acgctgac
//
LOCUS       DATGBK010001702         1678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_205569, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001702 DATGBK010000000
VERSION     DATGBK010001702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205569"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..360)
                     /locus_tag="VKJ77_23965"
     CDS             complement(<1..360)
                     /locus_tag="VKJ77_23965"
                     /inference="COORDINATES: protein motif:HMM:NF012589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY family carbohydrate kinase"
                     /protein_id="HMC48395.1"
                     /translation="MERYLLGIDIGTSACKVIAVDSHGHVVAKALAGYPIVSLQPGWA
                     EQDPEDWWQATLKAVREVLAMLPDRRAVGGIGLSGQMHGLTALDDHDRVIRPAILWCD
                     QRAAPQCDEITARAGGLE"
     gene            complement(385..>1678)
                     /locus_tag="VKJ77_23970"
     CDS             complement(385..>1678)
                     /locus_tag="VKJ77_23970"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC48396.1"
                     /translation="AATHAFTSWRWVNAFERSRVLHKIGDEINRAERRIATAITLEMG
                     KPLNEALGEARKLAKAFHYYAEEAVRIFGETIPNEEDGFISFVEKEPVGVVGAIAPWN
                     YPVELIGWKLAASLAAGCTIVVKPSEYTPSSAEELFRCLDAAGVPAGVANLIMGGRST
                     GKLLVGHPGIDKVAFTGSQAAGEDIYRTVSGITPLSLELGGSCPLIVTAHADLERAVA
                     GTLRRAIRNAGQICISINRAYVHEDAYWHFVEALAAGAQRLVVADGIAHENADVGPMT
                     TRAGLDKVTRHVDDAKARGARILCGASRSQAHTKGLFYAPTVIANCSPDMLVMHEETF
                     GPVIGVSPYTSLDDAIAQANGTPSGLAAYAYTEHVKESFTLSRRLDFGNVSINHVDAG
                     IMNAPYGGRKQSGTGYEHGREGMEGYLHLKHVRLRHGA"
BASE COUNT          301 a          546 c          495 g          336 t
ORIGIN      
        1 ttccaggccg cccgcgcggg ccgtgatttc atcgcactgg ggtgcggcac gctggtcgca
       61 ccagaggatt gccggccgga tcacgcggtc gtgatcgtcg agcgcggtta gtccatgcat
      121 ctgtccgctc aggccaatac cccctaccgc gcgccggtcc ggcaacatcg caaggacctc
      181 gcgcaccgcc ttgagcgtgg cctgccacca gtcctcgggg tcctgctccg cccagcccgg
      241 ttgcagcgaa acaatcggat aacccgcgag ggctttggcg acgacatgcc cgtgactgtc
      301 gacagcgatt accttgcacg ccgacgtgcc tatatcgatg cccaaaagat agcgttccat
      361 ggccggtctc cttgacagtt accgttaagc gccgtgccgc aagcgcacgt gcttcagatg
      421 caggtagcct tccatgcctt cgcggccatg ttcgtagccc gtgccgcttt gcttgcggcc
      481 gccatacggt gcattcatga tgccggcatc gacgtgattg atcgacacgt tgccgaagtc
      541 gaggcgacgg ctcagcgtga agctttcctt cacgtgctcc gtgtatgcat aggcggcaag
      601 tcccgaaggc gtgccgttcg cctgcgcgat agcgtcatcg agggatgtat aaggcgacac
      661 gccaatcacc ggtccgaagg tttcctcatg catgacaagc atgtcgggcg aacaattggc
      721 aatgacggtg ggcgcataaa agagcccctt ggtgtgcgct tgcgagcggc ttgcgccgca
      781 caggatgcgt gcgccgcgcg cctttgcatc gtcgacgtga cgcgtaactt tatcgagtcc
      841 cgcacgcgtg gtcatgggcc ccacgtcagc gttttcgtgt gcgatgccgt cggccacgac
      901 cagtctttgc gcgcccgctg cgagcgcctc gacgaagtgc caataggcat cctcatgcac
      961 atacgcgcga ttgatcgata tgcaaatttg accagcattg cgaatcgccc gccgcaaggt
     1021 gcccgcgacc gcgcgctcca aatccgcgtg agccgtgacg atcagcggac aactgccccc
     1081 cagttccagt gacaagggtg tgatgccgct taccgtccgg tagatatcct cgccggcagc
     1141 ctgggaaccg gtgaaggcga ctttgtcgat acccggatga cccaccagca gcttgcccgt
     1201 cgagcggccg cccatgatca ggttggccac gcctgccgga acgccggcgg catcgaggca
     1261 acggaacagt tcttccgcgc ttgacggcgt gtattccgac ggcttgacca cgatcgtgca
     1321 acccgccgca agcgatgccg ctagtttcca gccaatcagc tccacaggat aattccaggg
     1381 tgcgatggcg ccgaccacgc cgaccggttc cttctccaca aaactgatga atccgtcctc
     1441 ttcgttcggt atggtttcgc caaatatccg cacggcttct tccgcgtagt aatggaacgc
     1501 cttcgcgagt ttgcgtgctt cgcccagcgc ctcattaagc ggcttgccca tttcgagcgt
     1561 gatcgcggtc gcgatgcggc gttcagcacg gttgatttca tcgccgatct tgtgcagcac
     1621 gcgcgagcgt tcgaacgcat tgacccatcg ccacgatgtg aacgcgtgcg ttgcggcg
//
LOCUS       DATGBK010001703         1516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_19837, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001703 DATGBK010000000
VERSION     DATGBK010001703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19837"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..727
                     /locus_tag="VKJ77_23975"
     CDS             <1..727
                     /locus_tag="VKJ77_23975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC48397.1"
                     /translation="TALVTGASRGIGRASALALASQGAQVLVHYSSGEKEADAVVAEI
                     RAAGGNAQKVAANLRDADGPHTLAKRVRAVVGHRLDILVANAGISKSASIEETTVEDF
                     DNLFAVNVRAPYFLVQQLLPVMCKGSSVVLLSSLAAHTVVGKLPAYAATKGAVDTLVK
                     HFASALGERGIRVNAVAPGVVATDMSSFTKTDEGRGVAIGMQALKRLAQPDDIGSAVA
                     FLASDAARWITGETLHVDGGSKL"
     gene            820..1467
                     /locus_tag="VKJ77_23980"
     CDS             820..1467
                     /locus_tag="VKJ77_23980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HMC48398.1"
                     /translation="MTPSASVLYESKGSPNARRVRIFIAEKGIDIPMKPVDLGAKEQF
                     SDSYRAINPRSQVPALALANGPVITEVLAIWRYLEEAYPQTPLLGTTAESKALVTMWE
                     RRAELDGFAPVMEGVRNAVAGLKGRALSGPHAYEQIPELVERSKQRVANFFSDFNVRL
                     ETVRFVAGDEFSAADITTLVTVDFATNALKMPIPAEHTAFRRWYEEVSARPSATA"
BASE COUNT          315 a          448 c          459 g          294 t
ORIGIN      
        1 gaccgctctc gtcacaggcg cttctcgcgg cataggccgg gctagtgccc ttgcactggc
       61 aagccagggc gcgcaagtgc tggttcacta cagcagcgga gaaaaagaag ccgacgctgt
      121 cgttgccgaa attcgtgcgg ccggcggcaa cgctcaaaag gtcgctgcga atctgcgcga
      181 tgcagacggc ccgcatacgc tcgccaaacg tgtacgcgct gtggtgggcc atcgactgga
      241 cattctggtc gcgaacgccg gtatttcaaa gtcggcgagc atcgaggaaa cgacggttga
      301 agatttcgat aacctgttcg ccgtgaatgt gcgcgcaccc tattttctcg tgcagcaatt
      361 gctgccggtg atgtgcaaag gcagcagcgt tgttctgctg tcgtcgctcg cagcgcatac
      421 ggtggtcggc aagctgcctg cctacgcggc gaccaagggc gcggtcgata ccctcgtcaa
      481 gcatttcgcc tccgcacttg gcgaacgcgg tattcgcgtg aatgcggtgg cgcccggcgt
      541 ggtcgccacc gatatgtcta gtttcacgaa gactgacgag ggacgcggcg tggcgatcgg
      601 tatgcaagcg ctaaaacgtc tcgcgcaacc cgatgacatt ggcagtgcgg tcgcgttcct
      661 cgcatcggat gccgcgcgct ggattaccgg cgagacgttg catgtagacg gcggctcaaa
      721 gctctagttc gaacggattc gggcatattt tcagcgtgtg ttaaaaacct attgattagg
      781 tatccacact taaactaaat gcgaaaaagg aagatcaaaa tgacaccctc cgcctccgtg
      841 ctgtacgaat caaaaggctc gccgaacgca cgccgtgtcc gcatcttcat cgcggagaag
      901 ggaatcgata tcccgatgaa accggttgac ctgggcgcca aggaacagtt ctctgactcc
      961 taccgcgcaa tcaacccgcg cagccaggtg ccggcgctgg cgttagccaa tggtcccgtc
     1021 atcactgaag tgctcgcgat ctggcgttac ctggaagagg cgtatccgca aaccccgttg
     1081 ctagggacga cggccgagtc gaaggccctc gtcacgatgt gggagcgccg cgcagaactg
     1141 gacggctttg caccggtcat ggaaggcgtg cgcaacgcgg tcgccggact gaaaggccgc
     1201 gcgctctcgg gcccgcacgc ttatgagcag attcctgaac tggtcgagcg cagcaaacag
     1261 cgcgtggcga attttttctc cgactttaac gttcggctcg agacggtccg gttcgtagcc
     1321 ggcgatgaat tctcggcagc ggacatcacc acgctggtca cggtcgactt cgcaaccaat
     1381 gcgttgaaga tgccgattcc agccgagcac accgcgtttc gtcgatggta cgaagaggtc
     1441 tctgcccggc cgagcgccac cgcataaaac cctggtgccg gtcctgactg accggcgcgt
     1501 aacaaaccca ttttgg
//
LOCUS       DATGBK010001704         1563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_182011, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001704 DATGBK010000000
VERSION     DATGBK010001704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182011"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..808)
                     /locus_tag="VKJ77_23985"
     CDS             complement(<1..808)
                     /locus_tag="VKJ77_23985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HMC48399.1"
                     /translation="MSNAQTKQEKRAPQSIESRIAECYDELSEIDQRLADVILSAPGQ
                     LAMQTATELATTAQVSKATTTRFFKKLGYASYDAARAVARAAQVGGSPLYLQERGRKN
                     ASTKLDDVIQAHLRHEVENLANTYRSLDTRMLSEVVDAVAHARRVVIIGYRHSHTVAT
                     MIRRELIQVRSDVVLLPAPGDTIGEYLGDLTAKDVVIIVGLRRRVPVVGFAAVALAEA
                     GVPILYMSDVIAGKPARLARWVIRCHTDGLMLFDSNVGMTAVVNLICSLVA"
     gene            1087..>1563
                     /locus_tag="VKJ77_23990"
     CDS             1087..>1563
                     /locus_tag="VKJ77_23990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007579302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48400.1"
                     /translation="MPKRRLSSIALAALLPFAALIHSVAANADTLDDIKSRGTMTVAI
                     DPTFAPYEYTDANNNIVGFDPAIMAAVAKHLGVKIEYQRMSFSGIIPGLLAHSFDIEG
                     SALNVTAERAKRLAYVVPTSKTVNGALVRSDFKKIPQHATIESLAGLTAAVKSASAP"
BASE COUNT          311 a          490 c          435 g          327 t
ORIGIN      
        1 cagcaaccag tgagcagatc aggttgacca ccgccgtcat gccgacattg ctgtcgaaca
       61 gcatcaggcc atccgtgtgg cagcggatca cccagcgcgc cagtcgcgcc ggtttccccg
      121 caatgacatc cgacatatac agtattggta cgccagcctc ggcgagtgca actgcggcaa
      181 aaccgacgac cggcacacgg cgccgcaagc cgacgatgat cacgacatcc ttcgcggtca
      241 ggtcgccgag atattcaccg atcgtgtcgc ccggggcggg caataacacc acgtcggagc
      301 gcacctgaat cagttcgcgc ctgatcattg tggccaccgt atgactatgc cgatatccga
      361 taatcactac gcgccgcgcg tgcgcaacgg catcgaccac ctcgctcagc atgcgcgtat
      421 cgagcgaccg gtacgtgttc gccagattct cgacctcatg ccgcaagtgc gcctgaatca
      481 catcgtcgag tttcgtactc gcattcttgc ggccccgttc ctgtagatac aacggcgaac
      541 cgccgacctg cgccgcgcgt gcaaccgcgc gcgcggcgtc atatgacgca tacccgagct
      601 tcttaaaaaa acgcgtcgtg gtcgctttcg acacctgcgc ggtcgtcgcc agttcggtag
      661 cggtttgcat cgccagttgt ccgggtgcac tcaggatgac atcggccagc cgttgatcga
      721 tctcggacag ttcgtcatag cattcggcga tgcgactctc gatcgactgc ggtgcgcgct
      781 tctcttgttt cgtttgagcg tttgacattt cggcttgtga gtaagtggag agcccgtcgt
      841 ggtgcaacac cagcaccgcg aatgtgcatt gctattctct tgcacgcact gggtgcagac
      901 ggtcggtatc tcgcgatgac gccattatag gtcggaccgc aggatgtgaa atgcgcgttt
      961 ctcgcaaacc gttgtagaaa cagatgtttt cacgattaga tttgtgaaac cagtgtttct
     1021 catatcgggt tggtacgaat catgccttgc agtggcatcg tccacctgtc tacgggagtt
     1081 ctcctgatgc cgaagcgccg cctctccagc attgcccttg ccgcgttgtt gccgtttgcc
     1141 gcgttgatcc actcggtagc cgcgaacgcc gataccctcg acgacatcaa gagtcgcggc
     1201 acgatgaccg tcgcgatcga tccgaccttc gcgccgtacg agtacaccga cgccaacaac
     1261 aatatcgtcg gcttcgatcc cgccatcatg gctgccgtcg cgaaacatct cggcgtaaag
     1321 atcgaatatc agcgcatgtc gttcagcggg atcattccgg gtctgctcgc gcattcgttc
     1381 gatatcgaag gttccgcgct gaacgtaacc gccgagcgcg cgaagcgtct cgcgtacgta
     1441 gtgccgacca gcaagacggt gaacggcgcg ctggtgcgct ccgacttcaa gaagattccg
     1501 cagcatgcaa ccatcgaatc gctcgcgggt ttgaccgccg cggtcaagag cgcaagcgcg
     1561 ccc
//
LOCUS       DATGBK010001705         2182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_43741, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001705 DATGBK010000000
VERSION     DATGBK010001705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43741"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..773)
                     /locus_tag="VKJ77_23995"
     CDS             complement(<1..773)
                     /locus_tag="VKJ77_23995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC48401.1"
                     /translation="MKRTAARPLLWLAALLAVYLCAPFVASIPQVGAADWHGVDWTST
                     LSAVAVSAGSASVASLVILLGGVPLGYLLARSNSRKAALLGFVVQLPLALPPLTSGVL
                     LLFLLGPYSWVGQLTGGALTDSFTGIVLAETLVAAPFLIIAARCAFAAVDPMYEDVAA
                     TLGHRAGSRFFRVTLPVAWPAISAGLALAWLRAFGEFGATVMVAYHPYSLPVYTYVVF
                     GGQGLPAMMPLLLPTLAIAIACAALSIYSRKGRASLSPEL"
     gene            complement(770..1645)
                     /locus_tag="VKJ77_24000"
     CDS             complement(770..1645)
                     /locus_tag="VKJ77_24000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012733386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HMC48402.1"
                     /translation="MIRKVMVSVAVMASALLSHAAVADEHAVNVLYAGSLVNLMERSV
                     GPAFEKETGLHFQGYAAGSNKIANEIKGKLRRGDVFISASPKVNTGLMGVENGDHVAW
                     YVTFAESPLMIGYNPRSKFAADFKTKRWDKVLQEPGIRIGRTDPKLDPKGAFTVEMVT
                     KAADLYHQPDLVEKTLGAAENPDQVLPEETLVGRLQSGQLDAGFFYSTETSDLKIPSI
                     RPAPELQAKASYTLTILGDAPNSAGATRFVDFLLSAKGRELLKEHGVDVIKPAITGNA
                     QVMPPSLQAVIDATR"
     gene            1875..>2182
                     /locus_tag="VKJ77_24005"
     CDS             1875..>2182
                     /locus_tag="VKJ77_24005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007587580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HMC48403.1"
                     /translation="MRTSARNQFVGEVVDVKHGAVNDEILLRANDGLEIVAVITHGSA
                     ASLGLAAGKAAFALVKASSVIVMVDVADSQVSARNCFAGTVSAVTTGAVNSEVIIAVA
                     G"
BASE COUNT          450 a          644 c          692 g          396 t
ORIGIN      
        1 agttccgggc tcaacgaagc gcggcctttg cggctataaa tggacaacgc tgcacacgca
       61 atggcaatgg caagcgtggg cagcagcaag ggcatcatgg ccggcaagcc ctggccgccg
      121 aacacgacat aggtataaac cggcagcgag taagggtgat acgcgaccat gacggtcgca
      181 ccgaattcgc cgaatgcgcg cagccacgcc agcgccagtc cggcgctgat cgcaggccat
      241 gcaactggca gcgtgacgcg aaagaagcgg ctgccggcac gatggcccag cgtggcggcc
      301 acgtcctcat acatggggtc gacggcagca aatgcacagc gtgccgcaat gatcaggaac
      361 ggtgccgcga caagcgtttc agccagcacg atgccggtga acgagtcggt cagcgcgccg
      421 cctgtcagtt gtccgaccca gctatagggg ccgagaagaa acagcagcaa gacgccgctg
      481 gtgagcggcg gcaaggcgag cggcaattgc acgacaaagc cgagcaacgc cgccttgcgt
      541 gaattcgacc tcgcgagcag ataacccagc ggtacgccgc ccaacaggat aacgagcgac
      601 gcgacgctcg cgctgcctgc cgatacggcc accgccgaca gcgtgctcgt ccagtcgacc
      661 ccgtgccagt ccgctgcacc gacctgcggg atgctcgcga cgaacggggc gcacaaatag
      721 actgcgagca gcgctgcaag ccacagcagt ggtcgcgcag cggtgcgttt catcgagtag
      781 cgtcaatcac agcctggagg gacggcggca tgacctgggc gttaccggtg atcgcgggtt
      841 tgattacgtc gacaccgtgt tccttaagca actcgcgccc cttcgcgctg agcaggaagt
      901 cgacgaagcg cgtggcgccc gccgagttcg gtgcgtcgcc gagaatggtg agagtgtagc
      961 tcgccttggc ttgcaattcg ggcgcggggc gaatggacgg aatcttcagg tcggaggtct
     1021 cggttgaata gaagaagccg gcgtcgagtt gcccggattg caaacgtccg acaagggttt
     1081 cttcaggcag gacctgatcg ggattctcgg ctgcgcccaa ggtcttttcg accagatccg
     1141 gctggtgata aagatcggcg gccttggtca ccatctcgac ggtgaacgcg cccttcgggt
     1201 ccagtttggg atcggtccgg ccaatgcgaa tgcccggctc ctgcaagacc ttgtcccagc
     1261 gctttgtctt gaagtcggcg gcaaatttgc tgcgcgggtt atagccgatc atcagcggcg
     1321 attcggcgaa cgtgacatac catgcgacat ggtcgccgtt ctccacaccc atcaagcccg
     1381 tgttgacctt cgggctcgcg ctgatgaaca cgtcgccgcg acgcagcttg cccttgatct
     1441 cgttggcgat cttgttcgaa cccgccgcat agccctggaa gtggaggccg gtttcctttt
     1501 caaaagcggg gccaacgctg cgctccatca aattgacgag cgacccggca tacagcacgt
     1561 ttacggcgtg ttcatctgcc acggcggcat ggctcaagag cgcgctggcc atgaccgcaa
     1621 ccgacaccat caccttacgg atcatctgat tctccacgtt gataaagagc gtaataaagg
     1681 ccgctatatt acgctgagac ttaacttgtt cgctaacgcc atcgacatgt tttgcgcggc
     1741 tattcgtctc aaagggggca gcgtggtgcg gttacacttg tggcctgcct gcaatgcagg
     1801 tgacccaagc caaacgtgtg tcctgagatc cgggtgatcc acgccttcaa gggacgccgc
     1861 aaccggagat gaacatgcga acaagcgccc gaaatcaatt tgtcggtgaa gtggtggacg
     1921 tcaagcacgg cgccgttaac gacgagatcc tgctgcgcgc caacgatggc ctggagattg
     1981 tcgcggtgat cacgcatggc agcgctgcat cgctcggact ggccgccggc aaggctgcgt
     2041 tcgcgctggt caaggcatcg tcggtcatcg tgatggttga tgtggcggat agccaggtat
     2101 cggcgaggaa ctgctttgcc gggacggtgt cggctgtgac tacgggtgcc gtcaacagcg
     2161 aagttattat tgctgtcgcg gg
//
LOCUS       DATGBK010001706         3056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_228924, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001706 DATGBK010000000
VERSION     DATGBK010001706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228924"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..942
                     /locus_tag="VKJ77_24010"
     CDS             <1..942
                     /locus_tag="VKJ77_24010"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011488263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase family protein"
                     /protein_id="HMC48404.1"
                     /translation="TGSVLPRSAYERDTPEVLYGGHTPGGTPMVIQLLGSDPEWMALN
                     AAQAASLSPHGIDLNFGCPAKVVNRHGGGAMLLAHPDQLNRIVSSVRAAVPAGIAVTA
                     KMRLGVSDTSLAIDCATALAEGGAASLVVHARTRDHGYRPPAHWEWIARIDAAVDVPV
                     VANGEVWTMADWERCRAVSGCADVMIGRGAVSDPFLALRIRGLMDPTPSGEEWPAVLR
                     QLADYLRKLQVHSAVRHEHGRVKMWLSYLRRTWAEAAELHAAIRRLHDSHEILEVIER
                     ALAINDLIPAHQRAALGLFDAATPCRLTGPAVASAVQ"
     gene            1061..2452
                     /gene="rimO"
                     /locus_tag="VKJ77_24015"
     CDS             1061..2452
                     /gene="rimO"
                     /locus_tag="VKJ77_24015"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HMC48405.1"
                     /translation="MSQTISPAVPTASAPKVGFVSLGCPKALVDSEQIITQLRAEGYE
                     ISGSYDGADLVVVNTCGFIDEAVQESLDAIGEALHENGKVIVTGCLGAKKSASGTGLI
                     QEVHPKVLAVTGPHATAEVMSHVHLHLPKPHDPFIDLVPPAGIKLTPRHYAYLKISEG
                     CNHRCTFCIIPSMRGDLVSRPVADVMLEAENLFKSGVKELLVISQDTSAYGVDVKYRT
                     GFWNGKPVKTRMTELVGALGELAAQYGAWVRLHYVYPYPSVDEVIPMMAEGPLKGHVL
                     PYLDVPFQHAHPEVLKRMKRPANAEKVLERVQKWRAMCPDLTIRSTFIAGFPGETEEQ
                     FQTLLDFIRIADLDRVGCFAYSPVEGATANELDGALPDEVREDRRARFMELAEELSAE
                     RMKRKIGKTLKVLVDELSNEGGVGRTAADAPEIDGVVYIEPAKKASKRYKAGDFVSVK
                     ITGADGHDLWGEV"
     gene            2540..>3056
                     /locus_tag="VKJ77_24020"
     CDS             2540..>3056
                     /locus_tag="VKJ77_24020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004521353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HMC48406.1"
                     /translation="MAQREVMVVSGVRTAIGDFGGALKDFSPTDLGARVVREVLSRAS
                     VSGDDVGHVVFGNVIQTEPKDMYLARVAALNGGVAQHAPALTVNRLCGSGLQAIVSAA
                     QSILLGDTDVAIGGGAESMSRAPYLAPSVRFGQRMGDAHLIDMMLGALHDPFDTIHMG
                     VTAENVAAKYGI"
BASE COUNT          569 a          919 c         1007 g          561 t
ORIGIN      
        1 acgggctctg tgcttccccg aagtgcctac gagagggaca cgcccgaagt cctttacgga
       61 ggtcatacac ccggcggtac gccgatggtg atccagctgc tcggcagcga tcccgaatgg
      121 atggcgctca acgcagccca ggcggccagt ctgtcgccgc atggcatcga tctaaatttc
      181 ggctgccccg ccaaagtcgt caaccggcac ggcggcggcg cgatgcttct ggcgcatccc
      241 gaccagctga accggatcgt ttcgtcggtt cgcgcagcag tgcctgccgg catcgccgtg
      301 accgcaaaaa tgcggcttgg cgtgtccgat acttcgctcg cgatcgactg cgccacggcg
      361 ctggcggaag gcggcgccgc ctcccttgtc gtgcatgcca gaacgcgtga ccatggctac
      421 cggccgccgg cccactggga gtggattgcg cgtatcgacg ccgccgtgga cgtgccggtc
      481 gtggccaacg gagaagtctg gacaatggcc gactgggagc ggtgcagggc cgtcagcggc
      541 tgcgcggacg tgatgatcgg gcgcggcgcc gtctcggatc cgttcctggc cttgcgcatc
      601 cgcggactga tggacccgac gccgtcgggc gaggaatggc cggccgtgtt gcgccaactt
      661 gccgattacc tgagaaagct gcaagtccat agcgcggtcc gccatgagca tggtcgcgtc
      721 aaaatgtggc tcagctatct caggcggacc tgggcggagg ctgccgagct gcacgcagcc
      781 atccggcgcc tgcatgattc gcacgaaatt ctcgaagtga tcgagcgtgc gctggcaatc
      841 aacgacttga taccagcaca tcaacgcgcg gccctcggcc tgtttgatgc ggcaacgcct
      901 tgccgcttga ccggccccgc cgtcgccagc gcggtacaat gagcggttgc gtgcgcggga
      961 cgctgtccgg gctgtggtcc tcttatggac tcggacccct tagccttgcc gcaccgtccc
     1021 catttgtcgc catcgtcacc gctatacgcc ggactcacct atgtcgcaga ccatttcccc
     1081 cgccgtgccg accgcttcgg ccccgaaagt cgggttcgtt tcactcggat gcccaaaagc
     1141 cttggtcgac tccgagcaga tcatcactca actgcgcgcg gaaggttacg agatctccgg
     1201 ctcctacgac ggcgccgatc tcgtcgtagt caacacctgc ggttttatcg atgaagccgt
     1261 gcaggaaagc ctcgacgcca ttggcgaggc gctgcacgag aacggcaagg tgatcgtgac
     1321 cggttgtctc ggtgcgaaga agagcgcgag cgggacagga ttgatccagg aagtgcatcc
     1381 gaaagtcctg gccgtgaccg ggccgcacgc gaccgccgaa gtcatgagtc acgtgcacct
     1441 gcatttgccc aagccgcatg atccgttcat cgatctcgtg ccgcctgccg gcatcaagct
     1501 gacgccgcgc cattacgcgt atctgaagat atcggaaggc tgtaatcatc ggtgcacctt
     1561 ctgcatcatc ccgtccatgc gtggcgacct ggtgtcgcgc ccggtggccg acgtgatgct
     1621 cgaagccgag aacctgttca aatccggcgt caaggaactg cttgtgatct cgcaggacac
     1681 gagcgcgtat ggcgtcgatg tgaaataccg taccggtttc tggaacggca agcccgtgaa
     1741 gacgcgcatg acggagctgg tcggcgcgct gggcgagctc gccgcgcaat acggcgcgtg
     1801 ggtgcgcttg cattacgtgt acccctaccc gagcgtggat gaagtcattc cgatgatggc
     1861 cgaaggaccg ttgaagggtc acgtgctgcc gtatctggat gtgccgttcc agcacgcgca
     1921 ccccgaagtg ctcaagcgca tgaagcgccc ggcgaacgcc gagaaggtgc tcgagcgcgt
     1981 acagaaatgg cgcgcgatgt gcccggacct gacgatccgg agcacgttta ttgcaggatt
     2041 cccgggtgaa acggaagagc aattccagac gctgctggac ttcattcgta tcgccgatct
     2101 ggatcgggtc ggatgtttcg cttattcgcc agtcgaaggc gcgacggcga acgaactcga
     2161 cggcgcgctg ccggacgaag tgcgcgagga ccgtcgcgcg cgtttcatgg aactggccga
     2221 ggaactgtcg gcggaacgca tgaaacgcaa gatcggcaag acgctgaaag tgctcgtcga
     2281 tgaactgagc aacgaaggcg gcgtcggccg gaccgcggcg gatgcgccgg agatcgacgg
     2341 cgtggtgtat atcgagccgg caaagaaggc atcgaagcgt tacaaggcgg gcgatttcgt
     2401 gtcggtgaaa atcactggtg ccgatggtca cgacctgtgg ggcgaagtct gagcgtcagg
     2461 ttgtgagttg aggtctggat tcatcgctcg gcgcggcggt ttgcacaaag cacaaaacaa
     2521 ctgagacgaa ggagctgtca tggcacaacg tgaagtgatg gtggtcagcg gcgtgcggac
     2581 cgcaattggc gatttcggcg gtgcgctgaa ggacttcagt ccaacggatc ttggcgcgcg
     2641 cgtggtgcgg gaggttttgt cgcgagcgag cgtgtcgggt gatgatgttg gccatgtggt
     2701 cttcgggaat gtgatccaga ccgaacccaa ggacatgtac ctggcgcgcg tggccgcgtt
     2761 gaacggcggc gtggcgcagc acgcgcccgc actgaccgtc aaccgcttgt gcggttcggg
     2821 cctgcaggca atcgtctcgg ctgctcaatc cattttgctt ggcgatacgg acgtcgctat
     2881 cggcggaggc gcggaaagca tgagccgcgc gccgtatctc gcgccgtcgg tgcggttcgg
     2941 acagcgcatg ggcgacgcgc acctcatcga catgatgctc ggcgcgctgc acgatccctt
     3001 cgatacgatc cacatgggcg tcacggcgga aaacgtcgcc gccaaatacg gcattt
//
LOCUS       DATGBK010001707         1617 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_89435, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001707 DATGBK010000000
VERSION     DATGBK010001707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89435"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..607
                     /locus_tag="VKJ77_24025"
     CDS             <1..607
                     /locus_tag="VKJ77_24025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052247.1"
                     /note="dGTPase family type 2 subfamily; presumably
                     hydrolyzes dGTP to deoxyguanosine and triphosphate;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HMC48407.1"
                     /translation="DEIAYNNHDVDDGLRSGLITLDQLADVALWQTHYEAARGEYPDI
                     EGRRLIHETIRRIINTLIVDLIESTSGNLGRLNPQSVDDVRDAPALVTHSEAVAAQAT
                     ELKRFLYKNLYRHYQVMRMANKAGRVVSGLFKAFNDDPRLLPPAYQARGPIAEESAND
                     PRGSESASGSTQARLIAHYIAGMTDRYALKEYGRLFVIDDN"
     gene            683..>1617
                     /gene="ugpB"
                     /locus_tag="VKJ77_24030"
     CDS             683..>1617
                     /gene="ugpB"
                     /locus_tag="VKJ77_24030"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     substrate-binding protein UgpB"
                     /protein_id="HMC48408.1"
                     /translation="MSSRKLLVSAFSIAAVFAFGASQAQAATEIQFWHAMESALGERV
                     NDIANDFNASQSDYKIVPVFKGSYDQTMAAGIAAYRSGNAPAILQVYEVGTATMIQAK
                     KAVIPVSDVFKQAGVPLDEKAFVPTIASYYSDSKTGHLISMPFNSSTPVLYYNKDAFK
                     KAGIDPTQPPKTWDELEADAKKLKAAGMCGYSSGWQSWIQLENYSAWHGLPFASENNG
                     FDGTNAVLEFNKPLQIAHIQRLQNMAKDGTFTYVGRKDEAVSKFYSGDCGIVTNSSGS
                     LANIKKYAKFNFGTGMMPYDQSVKGAPQNAIIGGA"
BASE COUNT          374 a          478 c          480 g          285 t
ORIGIN      
        1 cgacgaaatc gcctacaaca atcatgacgt cgacgacggc ctgcgctcgg gcctgatcac
       61 gctcgaccaa ctggccgatg tcgcgctgtg gcagacgcac tacgaagcgg cgcgcggcga
      121 atatccggat attgaagggc gaaggctgat tcacgagacc atccgccgga tcatcaatac
      181 gctgatcgtg gatctgatcg agtcgacaag cgggaacctg gggcgcttga atccgcaatc
      241 ggtcgacgac gtgcgcgacg cacccgccct ggtcacgcac agcgaggcag tcgccgccca
      301 ggcgaccgaa ctcaagcgct ttctttacaa gaacctgtat cgccattacc aggtcatgcg
      361 gatggctaac aaagcgggcc gcgtggtgag cggcctgttc aaggcgttca acgacgaccc
      421 gcgcctgctg ccgccggcct accaggcgcg tgggccgatc gcggaagagt ccgccaacga
      481 cccccgaggc agcgagagcg catccggcag cacgcaggcg cgcctgatcg cgcattacat
      541 cgcgggcatg accgatcgtt acgcattaaa agaatatgga cgtctgttcg tcatagacga
      601 caattagaat cccgcgttcc agacgcgttc tgcgtttgtc ccaatcaaaa aaactccgcc
      661 ggggttcaag gagaggttac tcatgagtag tcgcaagttg ttggtcagcg ccttttccat
      721 tgccgctgta ttcgcctttg gcgccagtca ggcacaggcc gccactgaaa tccagttttg
      781 gcacgcgatg gaatccgcgc tcggtgagcg cgtgaacgac atcgcaaacg acttcaacgc
      841 gtcgcagagc gactacaaga tcgtgcctgt cttcaagggc agctacgacc agacgatggc
      901 tgcaggcatt gccgcgtatc gcagcggcaa tgcgccggcg atcctgcagg tgtacgaagt
      961 gggcacggcc acgatgatcc aggctaaaaa ggccgtcatt ccggtctcgg atgtgttcaa
     1021 gcaagccggc gtgccgctcg acgaaaaggc gttcgtgccg accatcgcaa gttattacag
     1081 cgactcgaag accggccacc tgatttcgat gccgttcaac agctcgacgc ctgtgctcta
     1141 ttacaacaag gacgcgttca agaaagctgg cattgatccg acccagccgc cgaaaacctg
     1201 ggacgaactc gaagccgatg cgaaaaagct gaaggccgcc ggcatgtgcg gttattcgtc
     1261 gggctggcag agctggattc agttggagaa ctacagcgcc tggcacggcc tgccgttcgc
     1321 atcggagaat aatggtttcg acggcaccaa cgccgtgctc gaattcaaca agccgctgca
     1381 gatcgcgcac atccagcgcc tgcaaaacat ggcgaaggac ggcacgttca cgtatgtcgg
     1441 ccggaaggac gaagcggtat cgaagttcta tagcggcgat tgcggcatcg tgaccaactc
     1501 gtcggggtca cttgccaaca tcaagaagta cgcgaaattc aattttggca cgggcatgat
     1561 gccgtacgac cagagcgtga agggcgcacc gcaaaacgcg attatcggcg gcgcgag
//
LOCUS       DATGBK010001708         2868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_205616, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001708 DATGBK010000000
VERSION     DATGBK010001708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205616"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2432)
                     /locus_tag="VKJ77_24035"
     CDS             complement(<1..2432)
                     /locus_tag="VKJ77_24035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosidase"
                     /protein_id="HMC48409.1"
                     /translation="MPPLRATKSLDTIEGARLHSTDCTRWQRWGPYLSERQWGTVRED
                     YSENGTAWDYFPQDHARSRAYRWGEDGIAGFSDDHQNWCVSLAMWNGLDPILKERLFG
                     LTNAQGNHGEDVKELYFYVDGTPTHSYMRMLYKYPHAAYPYDDLVTENGRRGADMPEY
                     EVLDTGVFEDNAYFDVHVEYAKNTPEDIVMRVTVENRGDCAASLDLLPQIWARNTWSW
                     QPSKKPSLTLRSDAKGSRVIAQSDGHEPLVVTAEARGDATVNWLFCENETNVRRLFNS
                     EGAGPFKDGFNDYIVQGEESAIRRDTGTRAAAHVHLEFAPNSRTVVTMRWRPESDADR
                     ERQVLDIDALFARRIAEADAFYAGLQHEMTDADQRLVQRQALAGMLWSKQYYHFDVTR
                     WMDGDPLQPAPAAARKRGRDADWRHMFNADIVSMPDKWEYPWYASWDLAFHAAAFALI
                     DPAFAKKQLLLLVKDRYQHPNGQLPAYEWAFGDANPPVHAWATWRVYEIDRAITGKAD
                     RDFLELVFHKLLLNFSWWVNRKDADGRNIFQGGFLGLDNVGIFDRSAPLPTGGRIDQS
                     DGTAWMAAYALDLMRIALELAVANHVFVDIGVKFFEHFLYIAEAVGSSDTCDTGLWDE
                     RDEFFYDVLQLPDGTSVPMRIRSIVGLIPLFAVHVLEEHLHGQLPGLRDRLTWFLEHR
                     PDLAKLVSRWNEPGKGNSLLLSVLRGHRMKALLRRMLDESEFLSDYGVRALSRVHRDN
                     PFVLEHNGDRFCIAYLPAESDSRVFGGNSNWRGPIWMPVNYLLIESLYEFHRYYGDDF
                     RVEYPTGSGQNLS"
     gene            complement(2474..>2868)
                     /locus_tag="VKJ77_24040"
     CDS             complement(2474..>2868)
                     /locus_tag="VKJ77_24040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HMC48410.1"
                     /translation="CEQLLLTPLGLRTLSPTDPAYKGRYTGTPLERDGAYHQGTVWPW
                     LTGPFVEAWLRVHGDDQASKAVARGRFLRPMRNHLHHAGLDHISEVADGDAPYTPGGT
                     PFQAWSLGELMRLERLLNAYPAELPQTR"
BASE COUNT          552 a          889 c          877 g          550 t
ORIGIN      
        1 gaaaggttct ggcccgatcc tgtcggatat tccacgcgaa aatcatcgcc gtaatagcga
       61 tggaattcgt atagcgactc gatcagcaaa tagttgaccg gcatccagat cggcccgcgc
      121 cagttcgagt tgccaccgaa cacgcgcgaa tccgattccg ccggcaggta cgctatgcag
      181 aagcgatcgc cattgtgttc aagtacaaaa ggattgtccc gatgcacccg cgacaacgcc
      241 cgcacgccgt agtccgacag gaactcgctt tcgtcgagca tgcgcctgag cagcgctttc
      301 atgcgatgtc cgcgcagcac cgacagcagc aggctattgc ccttgcccgg ctcgttccag
      361 cgcgacacca gcttggccag atcggggcgg tgctcgagga accaggtaag ccggtcccgc
      421 agccccggca actggccgtg caaatgctct tcgagcacat gcaccgcgaa tagcggaatc
      481 aggccgacga tagagcgaat gcgcatcggc acgctcgtgc cgtcggggag ctgcagcacg
      541 tcgtagaaga actcgtcgcg ttcatcccag aggccggtgt cgcaggtatc actggaaccc
      601 accgcttcgg cgatgtacag gaaatgctcg aagaacttca cgccgatatc gacgaacacg
      661 tgattcgcca ccgccagttc cagcgcaatg cgcatcaggt cgagcgcata cgcggccatc
      721 catgcggtgc catccgactg gtcgatacgg ccgcccgtgg gcagcggcgc cgagcggtcg
      781 aagatgccga cgttgtccag cccgaggaac ccaccctgga aaatgttgcg gccgtccgcg
      841 tccttgcgat tcacccacca cgagaagttc agcaacaact tgtggaacac gagctccagg
      901 aagtcgcgat ccgccttgcc ggtgatcgca cgatcgattt catagacgcg ccatgtcgcc
      961 catgcgtgaa ccggcgggtt ggcgtcgccg aatgcccatt cataggctgg caattgcccg
     1021 tttggatgct gataccgatc cttcaccagc agcagcaatt gtttcttcgc gaatgccggg
     1081 tcgatcagcg cgaacgcggc cgcgtgaaac gcgagatccc acgatgcgta ccacgggtat
     1141 tcccacttgt ccggcattga gacaatgtcc gcattgaaca tatgccgcca gtcggcatcg
     1201 cggccacgct tgcgggctgc cgccggcgcc ggctgcaatg gatcgccgtc catccagcgg
     1261 gtgacgtcga agtggtaata ctgtttcgac cacagcatgc ccgccagcgc ctgacgttgg
     1321 acaagccgct ggtcggcgtc agtcatttca tgctgcaagc ctgcataaaa ggcatcagct
     1381 tcggcgatcc ggcgggcgaa cagcgcgtcg atatcgagca cttgccgctc acggtctgca
     1441 tccgactccg ggcgccagcg catagtcact acggtgcggc tattcggggc gaactcgaga
     1501 tgcacgtgcg cggccgcgcg ggtgccggta tcgcgtcgga tggcgctttc ttcgccctgc
     1561 acgatgtagt cgttgaagcc gtccttgaac ggtcccgccc cttccgagtt gaagaggcgc
     1621 ctgacattgg tttcgttctc gcagaacagc cagttgactg tggcgtcacc acgggcttcg
     1681 gcggtcacga ccagtggctc atgaccgtcg ctttgggcaa ttacgcggct gcccttcgca
     1741 tcggagcgca aggtgagcga aggtttctta gaaggctgcc acgaccacgt gttgcgcgcc
     1801 cagatctgcg gcagaaggtc gagtgacgcc gcgcaatccc cgcgattttc gaccgtcacg
     1861 cgcatcacga tatcttcagg cgtatttttc gcatattcga catggacatc gaaatacgcg
     1921 ttgtcttcga acacgcctgt atcgagcact tcgtactccg gcatgtccgc gccgcggcgg
     1981 ccgttttcgg taacgaggtc atcgtagggg tacgcggcat gcggatactt gtacagcatg
     2041 cgcatgtagg aatgcgtcgg cgtgccgtcg acgtagaagt acagctcctt cacgtcctcg
     2101 ccgtggttgc cctgcgcatt cgtcagcccg aacaaccgtt ccttgagaat cgggtcgagg
     2161 ccgttccaca tcgcgagcga gacgcaccag ttctggtggt cgtcgctgaa tccggcaatg
     2221 ccgtcttcgc cccagcggta ggcgcgactg cgcgcatgat cttgcgggaa atagtcccag
     2281 gcggtgccgt tctcgctgta gtcctcgcgc accgtgcccc actgacgctc gctgagatac
     2341 ggcccccagc gttgccagcg cgtgcagtcg gtggaatgga gccgggctcc ttctatggtg
     2401 tcgagtgact tggtggcgcg cagtggcggc atgggacgtc cttgactaaa agcgtgacgg
     2461 aaagaccgat aatctagcgc gtttgcggca actcggcagg ataggcattg agcaggcgtt
     2521 cgaggcgcat gagttcgccg agcgaccacg cctggaatgg cgtgccgccg ggcgtatacg
     2581 gtgcgtcgcc atccgcgact tcggaaatgt ggtccagtcc cgcatgatgc agatggttgc
     2641 gcatcggcct gagaaaacgc ccgcgggcca cagctttcga tgcttgatcg tcgccatgaa
     2701 cccgcagcca cgcttcgaca aacgggccag tcagccacgg ccagaccgtg ccctggtggt
     2761 aggcgccatc gcgttccagc ggtgtgccgg tgtaacggcc cttgtaggca ggatcggttg
     2821 gcgacagggt ccgaaggccg agcggtgtga gcaaaagctg ctcgcatt
//
LOCUS       DATGBK010001709         2253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_275427, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001709 DATGBK010000000
VERSION     DATGBK010001709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275427"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /gene="eutB"
                     /locus_tag="VKJ77_24045"
     CDS             complement(<1..788)
                     /gene="eutB"
                     /locus_tag="VKJ77_24045"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004524485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008851 - ethanolamine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HMC48411.1"
                     /translation="MSYNETIGLRTYRFDDLKTLLAKASPLRSGDQLAGVTAHTEEER
                     VAAKMALAQVPLRTFLNEAVVPYEIDEVTRLIIDDHSPQAFAEISHLTVGDFRNWLLA
                     DTTDSAALIRVSAGLTPEMVAAVSKLMRNQDLILAAKKRPVITRFRNTIGLPGHLSVR
                     LQPNHPTDDVKGIAASMLDGLMYGCGDAMIGINPASDSLSAITTLLVMIDDFRQRYEV
                     PTQSCVLTHVTNTIAAIEKGAPVDLVFQSIAGTEKANSSFGVSLA"
     gene            1113..2204
                     /gene="mnmH"
                     /locus_tag="VKJ77_24050"
     CDS             1113..2204
                     /gene="mnmH"
                     /locus_tag="VKJ77_24050"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013395158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043828 - tRNA 2-selenouridine synthase
                     activity [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HMC48412.1"
                     /translation="MKNLLVSLDRLADFDEIVDVRTPLEFADDHIPGALNAPVLSNEE
                     RVLVGTMYKQVSPFEASRVGAALVARNIAQHLDTTFADRPRNWRPLIYCWRGGTRSGA
                     VTTVFSMIGWQARQLEGGYKTYRRATLDTLDHLPTMFHYIALTGPTGSGKTRLLHALH
                     EAGAQTLDLEQLAAHRGSLLGALPGEPQPSQKWFETLLVCALRGFDPARPVFVEAESR
                     RIGAISLPLTLLESFHRGACVDVEASREDRATFLLQDYAHLFDHPESFKQQLSRLIGL
                     HSRERVSSWHALIDAGREAELARELIDLHYDPAYSRSSHQNFSELPHATHMLFRPNDA
                     DVLEQARALLARLDVAQQAQTVTPPVASA"
BASE COUNT          412 a          709 c          696 g          436 t
ORIGIN      
        1 gccagcgaga cgccaaaact gctgttcgct ttctcggtgc ccgcaatcga ctggaacacg
       61 agatcgaccg gcgcgccttt ctcgatcgca gcaatcgtgt tggtcacatg agtgagcacg
      121 catgattgcg ttgggacttc gtagcgttgc cggaagtcgt cgatcatcac gagcagcgtc
      181 gtgatcgcac tcaacgaatc cgatgccgga ttgataccga tcatcgcgtc gccgcagccg
      241 tacatgaggc cgtcgagcat cgacgcggca atgcccttga cgtcgtcggt cggatggttc
      301 ggctgcaggc gcaccgacag atgtccgggc aggccgatcg tgttgcgaaa gcgcgtgatg
      361 accggccgtt ttttcgcggc gaggatcagg tcctggttgc gcatcagctt cgatacggct
      421 gcgaccatct ccggtgtcag ccccgcgctc acgcggatca gcgcggcgga gtcggtggtg
      481 tctgccagca gccagttgcg gaaatcgccc acggtgagat gcgaaatttc ggcgaaagcc
      541 tgcggggaat gatcgtcgat gatcagacgc gtgacctcgt caatctcgta cgggactacg
      601 gcttcgttaa ggaaggtgcg caacggcact tgcgccagcg ccatcttcgc cgccacgcgt
      661 tcttcttcgg tatgggctgt cacgcctgcc aactgatcgc cggagcgcag cgggctggct
      721 ttcgccagca gcgtcttcag gtcgtcgaaa cggtaagtcc gcagaccgat ggtttcgtta
      781 tagctcatcg cgtaatcctt gttccaaagc ttctccaggc acttattgcg cgctcgccgg
      841 ccagccagcg ctacggcatc cggcaagcgt cttgcgaagg tttaaccacg tccttcgctg
      901 atgaccgggg tctgtggtcg atctgggcgt taacccgaag tatgcggcga aacaattaac
      961 cgccaaaaat gcggaaacgg taatttgaac ggagcggagg gtgtatccat gccggatctc
     1021 cggtctggac ggcgcgctgg gcgcatcgcg acccgatttg ccgcgtgcga taatcgcgct
     1081 ccacccatcc gggcactttc gggcggcgca ccttgaaaaa cctgcttgtt tccctcgatc
     1141 gcctggccga tttcgacgag atcgtcgacg tccgcacgcc gctcgaattc gcggacgacc
     1201 atatccccgg cgcgctcaac gcccccgtgc tgagcaatga ggagcgggtg ctggtcggta
     1261 cgatgtacaa gcaggtgtcg ccgttcgaag cgtcccgcgt gggcgctgcg ctggttgcgc
     1321 gcaatatcgc gcagcacctc gatacgacct ttgccgaccg gccgcgcaac tggcgcccgc
     1381 tgatttattg ctggcgcggc ggtacccggt ccggtgccgt caccacggtg tttagcatga
     1441 tcggctggca ggcgcggcaa ctggaaggcg gatataaaac ctaccggcgc gcgacgctcg
     1501 atacgctcga ccatctgccc accatgttcc actatatcgc gctgacaggc cccaccggca
     1561 gtggcaagac gcgtctgctg cacgcattgc acgaggctgg tgcacagacg ctggatctgg
     1621 aacaactggc ggcacatcgc ggctccctgc tcggtgcgtt gccgggtgag ccgcaaccat
     1681 cgcagaaatg gttcgagacg ctgctggtct gcgcgctacg cggcttcgat ccggcccggc
     1741 cagtgtttgt cgaggcggag agccggcgga tcggcgcgat ctctttgccc ctcacactgc
     1801 tggagtcgtt tcaccgcggc gcgtgtgtcg acgtcgaggc aagccgcgag gatcgcgcca
     1861 cgttcctgct gcaggactac gcacatcttt tcgaccaccc ggaatcgttc aagcagcaac
     1921 tgtcgcggct gatcgggctg catagccgcg agcgggtgag cagctggcat gcgttgatcg
     1981 acgcgggccg ggaggcggag ctggcccgcg aattgatcga cctgcattac gatccggcct
     2041 attcacgcag cagccaccag aatttcagcg aattgccgca cgccacgcac atgctgttcc
     2101 ggccgaacga cgccgatgtg ctagagcagg caagggccct gctggcacga ctcgacgtcg
     2161 cgcagcaggc acagaccgta acgccgcccg tcgcgtcggc ttgacgccgt ttcattccaa
     2221 tacaaactac ccaagaccat gcaatccact ctt
//
LOCUS       DATGBK010001710         3443 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_297992, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001710 DATGBK010000000
VERSION     DATGBK010001710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3443
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297992"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(137..1693)
                     /locus_tag="VKJ77_24055"
     CDS             complement(137..1693)
                     /locus_tag="VKJ77_24055"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HMC48413.1"
                     /translation="MWFRTFVAWTVRHERWLACAIVAYAVVHCVGRAQREFWFDELFT
                     FYISRLPNLDQIFRAISADGNPPLYYLLAHLSMRLMGETELATRFPAILAFAAGALGT
                     YSFVRRRCGAIPALFALFAVATASAKTYGSEARPYTLLMAFSVLTLVSWQAATEERRS
                     RFFPLAGMALGIAGAIASHHYGIFHVAIPLALGEATRLVRRRKLDLPLYGACVLGASM
                     LIVTAPLMRETNLVLLNYIRESPTFYGRPRIASLESYMLMVNRRLLVVFFALLLLTWP
                     LFSAVSHEPERKGIPAHEVAAAIGLALLVPIMIGITWIATGYYQPRYAIGTTIGIAIL
                     LGFAAQRLGRNASHGVSMALLCLVLLSVHYIGADANALIDRLFGQPQPVADASGGSVL
                     DSAPGREPIVFASPVFYLPAWWYATPAVRERLYYLSDLSFAIRQKDPLPELSLAANQA
                     IVPSRVEDYRTFLTTHRKFLLYCKGNQGSYCWELDNWIRDRLLSEGWTVRPFVMRDDE
                     ALFMVEFPTR"
     gene            complement(2015..2407)
                     /locus_tag="VKJ77_24060"
     CDS             complement(2015..2407)
                     /locus_tag="VKJ77_24060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48414.1"
                     /translation="MDRTDESELRSAVEWRWSCAASLIQTVPVVAPLDGERIWSVVVH
                     IYELAGCSKADRAYAWSSSVQNSPETRTFSSLHVGPLNSPMNAVRAAVADELRVTRLA
                     ERQSHYRATSGYPAHAQLFRAPTLSQAS"
     gene            complement(2501..2863)
                     /locus_tag="VKJ77_24065"
     CDS             complement(2501..2863)
                     /locus_tag="VKJ77_24065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48415.1"
                     /translation="MTILSNRTLLASFALAIAAVPAWAQPGTTPTNTVVAPAPMQEAT
                     HSRSVRHTAKIDATEGPQRIAGPVQSVGPLPAGPIQSEGPTKSVGPVWTVGPYKSAGP
                     TSGSGPLAASGPLQGMND"
     gene            complement(2879..>3443)
                     /locus_tag="VKJ77_24070"
     CDS             complement(2879..>3443)
                     /locus_tag="VKJ77_24070"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HMC48416.1"
                     /translation="HATLRPGQTAPDFEQDTTNGSIRFHEWIKGSWCVLFSHSREVNV
                     ATVSELAQAARLRPEWSRRGVKLIGLSIGSSDAHARWERDLLETRGLVLNFPVIADAD
                     RSVSTLYGVALTDSKISPVMRHVYVIDPDKKIRRVQTFSSAIGCDFNGVLRAVDDLQQ
                     TAKRIATTPVSDGRAGQDVQDSLTTQA"
BASE COUNT          713 a          998 c         1112 g          620 t
ORIGIN      
        1 caaatcgacg atgcgcaggt tttgcctgga tctcggccgc ggcgccgtca gcgcggcaag
       61 atcgaaaccg ggaagcatcc tgagtcagac gactgattgt gcagcttgaa cagcatgccc
      121 aggtgcatct aattcgctat cttgttggaa attcgaccat aaacaatgct tcgtcatctc
      181 gcatgacaaa cggacgcact gtccaacctt cggacaatag tcggtccctg atccagttat
      241 ccagttccca gcagtagctg ccttggttgc ccttgcagta gaggaggaac ttgcggtgcg
      301 tggttagaaa cgttcgatag tcttcgactc tggaggggac gatggcttga ttcgccgcga
      361 gtgaaagctc gggcagcggg tctttttgtc ggatggcgaa tgacaggtca ctgagatagt
      421 agagtcgctc gcgcaccgct ggtgtcgcat accaccatgc cggcaaatag aatacgggac
      481 tggcaaaaac gataggctcg cggccgggtg ccgaatcaag taccgatcct cctgatgcgt
      541 ctgcgacggg ctgcggctgc ccaaagagcc tatcgatcag agcgttcgca tcagcgccga
      601 tgtagtggac gctcagcagg accaaacaca agagggccat ggagacaccg tgacttgcgt
      661 tgcgcccaag gcgctgagcg gcaaatccaa gcaaaatggc aattccgata gtcgtcccga
      721 tggcatagcg gggttggtag tagcccgtcg cgatccaagt gatgccgatc atgatcggca
      781 ccagcaaggc gagaccaatc gcggcggcaa cttcgtgcgc tggaattcct tttctctcgg
      841 gctcgtgcga gacagctgag aataggggcc acgtcagcaa gagcagagcg aagaaaacga
      901 cgagcagccg gcgattcacc atgagcatat agctctcgag gctcgcaata cgtggtctgc
      961 cgtagaacgt gggtgattcc cggatgtaat ttagcaagac gaggtttgtc tcgcgcataa
     1021 gaggtgccgt tacgatgagc atcgaagcac ccaaaacgca ggcgccataa agcggaagat
     1081 caagctttcg ccgcctgact agacgtgtcg cttcgccgag cgcgagcggt atcgccacat
     1141 ggaagatgcc gtaatggtgg ctcgcgatcg cgccagcgat tcccagcgcc atccctgcga
     1201 gcggaaaaaa gcgcgagcgc cgctcttcgg tcgccgcttg ccagctgacc aaagtcagaa
     1261 cgctgaaggc cataaggagc gtataagggc gcgcctcgct gccgtaggtt ttcgcgctgg
     1321 cggtagcgac agcaaaaaga gcgaaaagag ccggaatggc accgcagcgc cggcgaacaa
     1381 atgaatatgt tccgagcgcc cctgcagcga acgccagaat tgccggaaag cgggttgcta
     1441 gttctgtttc tcccatgagg cgcatgctca ggtgcgccaa cagataatag agcggcgggt
     1501 tgccgtcagc cgaaatggcc cgaaaaatct gatcgaggtt ggggagccgt gaaatataga
     1561 aggtgaagag ttcgtcgaac caaaattctc gttgggctcg gccaacgcag tgcaccacgg
     1621 cgtaagcgac gatcgcacat gcgagccacc tttcgtggcg cacggtccaa gcgacgaacg
     1681 tgcgaaacca cactagcggc aagtccggaa agcgtttgcc aaaaactgtg cgacgaaaac
     1741 gaggatcatc gacgcgccct ctgcaatgcg ccggtcgaag ttccagcgac gtagccgagt
     1801 tcgcgtagac ggccgaagaa cgacgtgaaa cggctcctgc ccgtcatggg cgggcggacg
     1861 agcatcatgc gcagcagtgg ggccggctgc tgtatccggt cgcgccaact catcggctca
     1921 tcttatcgcc aaggggcgtg gcgtcgattg gcgcaatttc ggcaggcagg gattttgggg
     1981 agaccgaatg cgcgcccgaa tcagtgcgct cgaatcagct cgcttgcgag agcgtcggcg
     2041 ccctgaagag ctgagcatgg gcgggatagc ccgaggttgc gcggtagtgg ctctggcgct
     2101 ctgccagacg cgtcacccgc agttcgtcgg caaccgcggc gcggaccgcg ttcatcggcg
     2161 aattgagcgg gccgacatgc agggagctga acgtgcgggt ctcgggactg ttctggaccg
     2221 acgaggacca ggcataggca cggtcggcct tgctgcaacc ggcgagctcg taaatatgga
     2281 cgacgacgct ccagatgcgc tcgccgtcga gaggcgccac caccggcacc gtctggatca
     2341 gcgatgccgc gcacgaccaa cgccattcca ccgccgatct gagctcgctt tcgtcagtcc
     2401 gatccatggt gaagtcctcg tgttggcggc gagacgggtg ggatgcggcg gcgtagatgc
     2461 gtctgtctag ccgtttcgcc gccgtagcgg cgaaagcggc ctagtcgttc attccctgca
     2521 gcgggccaga ggccgccagc gggcccgagc ccgaggtcgg gccggcgctc ttgtagggtc
     2581 cgacggtcca gaccggaccg acactcttgg tcgggccttc gctctggatc gggccggccg
     2641 gcagcgggcc tacgctctgg accgggccgg caatccgctg cggcccttcg gtcgcgtcga
     2701 tcttggcggt gtgccggacg ctgcgggaat gggtggcctc ctgcatcggc gcgggcgcca
     2761 cgaccgtgtt ggtcggtgtc gttcccggtt gtgcccaagc cggcacggcg gcgatggcca
     2821 gggcaaaaga ggcgagcagg gtacggttgg agaggatcgt catgtcagcc cccgtttatc
     2881 acgcttgagt cgtcaaagag tcttggacgt cttgaccggc ccggccgtcg ctcaccggtg
     2941 tcgttgcaat acgtttggcc gtctgctgca gatcgtccac cgcccgcagc acgccgttga
     3001 aatcgcaacc gatggcagat gaaaaagtct gcacccgccg gatctttttg tccgggtcga
     3061 tcacatacac gtgacgcatg accggcgaga ttttactgtc ggtgagcgcc acgccataaa
     3121 gcgtcgaaac cgaacggtcc gcatcggcga tcaccggaaa attgagcacc aatccgcggg
     3181 tctcgaggag gtcccgctcc catcgcgcgt gggcgtcgga ggagccgatc gagaggccga
     3241 tcaacttgac gccgcgcctg ctccattccg gccgcaggcg cgcggcttgg gcgagctcgc
     3301 tcacggtcgc cacattcacc tcacgtgagt ggctgaaaag gacgcaccag gaacccttga
     3361 tccactcgtg aaagcggatg cttccattgg tggtgtcctg ctcgaagtca ggagcggtct
     3421 ggccgggtcg aagggtagcg tgg
//
LOCUS       DATGBK010001711         1869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_344313, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001711 DATGBK010000000
VERSION     DATGBK010001711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344313"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1869)
                     /locus_tag="VKJ77_24075"
     CDS             complement(<1..>1869)
                     /locus_tag="VKJ77_24075"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HMC48417.1"
                     /translation="LSRHLDDFIGTYRIGAADKVLQSSTINFDVALHELLPALLTGGQ
                     VEMRGPQLWDPETTSRHLIEEKVTFARIPTAYWQQWLREPPAAASLAALRQITVGGEG
                     LPGDALRQWRNGPLGSIRLDNLYGPTETTIACMYRETRAQDEEQAIVSIGGPYPSRSV
                     RVCDADGNEAPAGALGELCIGGHTLARGYLGRAALTAERFIPDPNGPSGSRLYRTGDL
                     CRRRADGSIDFLGRMDQQVKLRGHRIELGEIEAVLREAPGVQAAAAALRGEGDAKRLV
                     GYVVGDADDSTVRRILQSRLPGYMVPSALVWMEHLPLMQNGKVDRAALPEPGVEAARQ
                     RMAPRTELEAALLAIWQSVLGREGLSMTDNFFEIGGHSLLLMRVASRIRQELGRDVSL
                     QTLFLHPVLESLAAELALHEARAADIISPRDREARIPLTHEQERLWFLWKLEPGSTAY
                     TITGAVNMSGVLDRQAIRVSLDRLLERHESLRTRFVEEDGQPWQVVDNAAYDGSHGRY
                     GWREESVFGQNQLDARLLELSREPFDLEHGPMLRVTLLAHAQNETVLHFAMPHVVSDA
                     WSQAILLREFSQLYRAASCNEAADLAPLAIQYGDYALWQRNPRNEAAIDTHYAYWQR"
BASE COUNT          356 a          631 c          554 g          328 t
ORIGIN      
        1 cgctgccagt atgcgtagtg tgtatcaatt gcagcttcgt ttcgggggtt gcgctgccac
       61 aacgcataat ctccatactg gatagccagc ggggcgagat cggccgcttc gttgcagctt
      121 gcagcgcgat acagctgcga gaattcgcga agcaggatcg cttgcgacca tgcatccgac
      181 accacgtgcg gcatcgcgaa atgcaggacg gtctcgttct gcgcgtgtgc gagcaacgtg
      241 acacgcagca ttggcccatg ctcgaggtcg aagggctcgc ggctcaattc aagcaagcgc
      301 gcgtcgagtt ggttctgacc gaaaacgctt tcttcgcgcc agccatagcg cccatgagac
      361 ccgtcatacg ccgcgttatc gacaacttgc cacggctgcc catcctcttc gacaaaacgc
      421 gtacgcaggc tttcatgccg ctcaagcaag cggtctaacg agacgcgtat cgcttgccgg
      481 tcaagcacac cgctcatgtt gacggcgccg gtaatggtgt aggcggtgct gcccggttcg
      541 agcttccata ggaaccacaa acgctcctgc tcgtgcgtca gcggaatgcg agcctcgcgg
      601 tcgcgcggcg aaataatgtc tgccgcccgc gcctcatgca gcgccagttc agccgccaga
      661 ctttccagca cggggtgcag gaacagcgtc tgcagcgaga catcgcggcc gagttcctga
      721 cgaatgcgcg aggccacccg catcagcagc aacgagtgac cgccgatctc gaagaagttg
      781 tcggtcatgc tcagaccttc acggcccagc actgactgcc agattgcgag caacgccgct
      841 tccagttcgg tgcgcggcgc catgcgctgg cgtgccgctt ccacgcccgg ttcgggcaac
      901 gccgcgcgat ccaccttgcc gttctgcatc agcggcaagt gttccatcca caccagcgcc
      961 gacggcacca tgtaacccgg caggcgactc tgcaagatac ggcgaaccgt ggagtcgtct
     1021 gcgtcgccga ccacgtagcc cacgagccgc ttcgcatcgc cttcgccgcg caacgcggct
     1081 gccgccgcct gcacgccggg cgcttcgcgc agcactgcct cgatctcgcc taactcgatg
     1141 cgatgaccgc gcagtttgac ctgctggtcc atgcgcccga ggaagtcgat gctgccatct
     1201 gcacggcggc ggcacagatc ccccgtccga taaagccggc tgccggacgg accattggga
     1261 tcgggaataa aacgttcggc ggtcagtgcg gcacgcccga gataaccgcg cgccagcgta
     1321 tgcccaccga tgcacaactc acccagcgca ccggccggcg cctcgttgcc gtcggcatcg
     1381 caaacgcgaa ccgaacgcga cggataaggg ccgccaatcg atacgatcgc ctgctcctca
     1441 tcctgagcgc gggtttcgcg gtacatgcag gcgatggtcg tttcagtcgg accgtacagg
     1501 ttgtcgagcc ggatagatcc aagcggaccg ttgcgccatt ggcgcaacgc gtcgccgggt
     1561 aacccttcgc cgcccaccgt gatctgccgc aatgctgcca acgaagcagc cgccggtggc
     1621 tcccgcaacc attgctgcca gtacgccgtc gggatgcgcg cgaacgtcac cttctcctcg
     1681 atcagatgac ggctcgtggt ctcaggatcc catagctgcg gcccacgcat ctcgacctga
     1741 ccgccggtca acagcgccgg taagagctcg tgcaaggcga cgtcgaagtt gatcgtcgat
     1801 gattgcagca ccttgtcggc cgcaccaatg cgatacgtgc caatgaagtc gtccagatgc
     1861 cggctcagg
//
LOCUS       DATGBK010001712         1547 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_275487, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001712 DATGBK010000000
VERSION     DATGBK010001712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275487"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VKJ77_24080"
     CDS             complement(<1..198)
                     /locus_tag="VKJ77_24080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012399446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HMC48418.1"
                     /translation="MSDQQTPISEDEIHAYVDGSLAEHRREEIDRLLERDEALATKVS
                     DYFSLNSMFHDRYDRVLSEPVP"
     gene            complement(195..713)
                     /locus_tag="VKJ77_24085"
     CDS             complement(195..713)
                     /locus_tag="VKJ77_24085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HMC48419.1"
                     /translation="MGVRDELMEHVPRLRRYARALINNRDLADDLVQDTLERALRHTE
                     KFQSGTDLRAWLFTIMHNVFANQARRAGVKAVHVSVDDENISEREFAVPGTQTQSLEM
                     RDLDFALQRLPLDQRQVVLLVGLEEMSYADVAQALEIPIGTVMSRLSRGRERLRALMA
                     GAQPGAKLQVVR"
     gene            complement(884..>1547)
                     /locus_tag="VKJ77_24090"
     CDS             complement(884..>1547)
                     /locus_tag="VKJ77_24090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HMC48420.1"
                     /translation="GMLDPKRAASVEMYLRSRPDEADRVAFYGRLNWQMQNAFHEADN
                     EEAPPAPASVRVRRMSRRGLRALFIATVAALAVAAAAIFAFDISDSALDNASMMALEQ
                     AVAAQEMASGAVGYESSMKVLAGAPDLSQVGFHPVARREMSVGPFASATEFVYRNRGG
                     EAAVLLVAPGLLAQPQPQWKAHRVGASRLLAWTAGGKRYVLAGRAKTRGLMLAADLMT
                     GS"
BASE COUNT          291 a          506 c          434 g          316 t
ORIGIN      
        1 cggcacgggt tcgctcagca cgcggtcata gcggtcatgg aacatgctgt tcagcgagaa
       61 ataatcgctg accttcgtag ccagtgcttc gtcgcgttcc agcaggcgat cgatttcctc
      121 gcggcgatgc tcagccagcg atccgtcgac atacgcgtga atttcgtctt cactgatagg
      181 tgtttgttgg tcgctcatcg caccacctgt aatttagcgc ccggttgcgc gcccgccatc
      241 aacgcgcgca gtctttcacg tccgcgcgac agccgcgaca tgacggtccc gatcgggatt
      301 tccagcgcct gcgccacatc ggcgtaactc atttcttcaa gccctaccaa caacacgacc
      361 tggcgctggt caagcggcaa acgctgcaac gcgaagtcca gatcgcgcat ttccagcgat
      421 tgtgtttgcg tgcccggcac cgcaaactcg cgctcggaga tattctcgtc gtcgacggaa
      481 acatgcacgg ccttcacgcc cgcccggcgc gcctgattcg cgaacacgtt gtgcatgatc
      541 gtgaacagcc acgcgcgcag atcggtgccg gactgaaact tctcggtgtg ccggagcgcg
      601 cgttcgagcg tgtcctgaac cagatcgtcc gcgagatcgc gattattgat cagcgctcgc
      661 gcgtagcggc gcaatcgcgg cacatgttcc attaactcgt cacggacgcc catcggcctt
      721 ccttcatttt gtaagcttgc gcaaacgttc gataaaccgt tgctctgatg atgggctaac
      781 accgggtcgt ggcgattatt cccgctcatt tcccgcgatc agcatgttta ttcgttgagt
      841 gcgtgattat gccgtctgca gcttcgtggt catcgcttga tgcctaactt cccgtcatca
      901 agtcagcggc cagcatcaac ccgcgggtct tcgcgcggcc tgccagcacg taacgcttgc
      961 cgcccgcggt ccatgcaagc aagcggcttg cgcccacgcg atgagccttc cattgaggtt
     1021 gcggctgcgc aagaagaccc ggcgccacga gcagcacggc ggcctcaccg ccgcgattgc
     1081 gatagacgaa ttctgtggcc gaagcaaacg gccccacgga catttcccgg cgcgcaacgg
     1141 gatggaaacc aacctgggac aaatccgggg cacccgccaa caccttcatc gaactttcat
     1201 accccaccgc acccgatgcc atctcctggg cggcgacggc ttgttcaagc gccatcatcg
     1261 aggcattgtc gagcgctgaa tctgaaatgt cgaacgcgaa gattgctgcg gcggccactg
     1321 ccagcgccgc gaccgttgcg atgaacaatg cgcgcaggcc gcgcctcgac atgcgccgca
     1381 ctcgcactga cgctggcgcg gggggcgctt cttcgttgtc ggcttcgtga aaggcgttct
     1441 gcatctgcca gttcaggcgg ccgtaaaacg cgactcgatc ggcctcgtca gggcgactcc
     1501 ttaaatacat ttctacgctc gccgcgcgct tgggatccag catgccg
//
LOCUS       DATGBK010001713         1982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_19973, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001713 DATGBK010000000
VERSION     DATGBK010001713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1982
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19973"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /locus_tag="VKJ77_24095"
     CDS             complement(<1..427)
                     /locus_tag="VKJ77_24095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48421.1"
                     /translation="MKRDLDPALGADAVAPNVQPMVRFAGVTKRYGSLTVLDALDLEV
                     ARNEKVAIIGPSGSGKSTLLRVLMTLDPLSGGLIEVEGEPLTHMRRNGALVPASERHV
                     REVRRKIGMVFQSFNLFPHMTAIQNTIEAPLRVLGMSKRD"
     gene            complement(486..1145)
                     /gene="ehuD"
                     /locus_tag="VKJ77_24100"
     CDS             complement(486..1145)
                     /gene="ehuD"
                     /locus_tag="VKJ77_24100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013342529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0033286 - ATPase-coupled ectoine
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0033288 - ATPase-coupled hydroxyectoine
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0033308 - hydroxyectoine transport
                     [Evidence IEA];
                     GO_process: GO:0051470 - ectoine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ectoine/hydroxyectoine ABC transporter permease
                     subunit EhuD"
                     /protein_id="HMC48422.1"
                     /translation="MNSFFDVKYAVHILPELLRASMYTIGITLVGFAIALVLGLVLAI
                     LRRSSIAPVARVTGFFVEFIRSTPLLIQVYVLFYVAPLYGLTMSALTAGTIGIAVHYA
                     CYVSEVYRAGLNCVARGQWEAACALSLSPWRTYSGVILPQAIRPVIPALGNYLVAMFK
                     DTPVLSAITVVELMQQAKNIGSETFRYLEPITMTGLFFLLISVTFASGVRHLERRVRL
                     P"
     gene            complement(1142..1810)
                     /gene="ehuC"
                     /locus_tag="VKJ77_24105"
     CDS             complement(1142..1810)
                     /gene="ehuC"
                     /locus_tag="VKJ77_24105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0033286 - ATPase-coupled ectoine
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0033288 - ATPase-coupled hydroxyectoine
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0033308 - hydroxyectoine transport
                     [Evidence IEA];
                     GO_process: GO:0051470 - ectoine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ectoine/hydroxyectoine ABC transporter permease
                     subunit EhuC"
                     /protein_id="HMC48423.1"
                     /translation="MGDLHELLPLLMKGTFATVEIAVSGILLAIVMAGMATVLRTSAW
                     RVLRWTGNAYVEVFRGTSLLVQLFWLFFVLPLPPFNLALTPLTVAIVGLGLHYGAYGS
                     EILRGALRSVPGGQYEAALALNMPASTRMRRIVLPQAMINALPPATNLMIELLKGTSL
                     VSLITLSDLTFRARQLDEATFRTAEIFALTLVIYFVLAQIVVTVMRYFERRVSHGITQ
                     RMAK"
BASE COUNT          442 a          578 c          607 g          355 t
ORIGIN      
        1 catcgcgctt agacatgccg agcacccgca gtggcgcctc gatcgtgttt tggatcgccg
       61 tcatatgcgg gaacagatta aagctctgga acaccatgcc gatcttgcgg cgcacttcgc
      121 ggacatgccg ctcggacgca ggcaccagcg cgccattgcg gcgcatgtgc gtcagtggct
      181 cgccttccac ttcgatcaga ccgccgctta gcggatcgag cgtcatcagc acgcgcagca
      241 gggtggattt gcccgacccg ctgggtccga tgatagcgac cttctcattg cgggcgacct
      301 ccagatcgag ggcgtcgagc acggtaagcg agccgtatcg tttcgtcacg ccggcaaagc
      361 gcaccatggg ttggacgttg ggcgcgacag cgtctgcgcc gagtgcgggg tcgagatccc
      421 gtttcatctg cttctcctgg agttccatca gcatgcccct gccggtcgtt cgaatagaac
      481 atgcgtcatg gcaatctcac gcgacgttcg aggtgacgca cgcctgaggc gaacgtcacg
      541 ctgatcaata aaaagaacag gccggtcatg gtgatcggtt cgagatagcg gaacgtttcc
      601 gagccgatgt ttttcgcctg ctgcattagc tcgaccactg tgatggcgga cagcacgggc
      661 gtgtccttga acatggcgac cagataattg ccgagcgcgg gaatgaccgg gcggatcgct
      721 tgcggcagaa tgacgccgct atacgtgcgc cacggcgaca gcgacaatgc gcaagctgct
      781 tcccattggc cgcgcgccac gcaattcaat cccgctcgat aaacctcgga cacgtaacac
      841 gcgtaatgaa ccgcaatgcc gatggtgccc gcagtcagcg ccgacatcgt gagaccgtag
      901 agcggtgcca catagaacag tacatagacc tggatcagta acggcgtgct gcggatgaac
      961 tcgacaaaaa accccgtcac ccgtgcgacc ggcgcaatgc tgctgcgtcg caggatagcg
     1021 agaacgaggc caagtaccag agcgatcgcg aagccgacca gcgtgatgcc gatcgtgtac
     1081 atggatgcgc gcagcaattc aggcagaatg tgcaccgcat acttgacgtc gaaaaaggag
     1141 ttcatttcgc catcctctgc gtgatgccgt gactgacgcg gcgttcgaaa taacgcatca
     1201 cggtgaccac aatctgcgcc aggacgaaat agatgaccag cgtcaacgca aaaatttcag
     1261 cggtcctgaa ggttgcttcg tcgagctggc gtgcgcggaa ggtgaggtcg gagagggtga
     1321 tcaacgaaac cagcgaggtc cctttcaaca attcgatcat caaattggtg gcgggcggca
     1381 gcgcgttgat catggcctgc ggcaagacaa tgcgccgcat cctggtcgag gcgggcatgt
     1441 tcaacgcaag tgccgcttca tattgccctc ctggcactga acgcaatgcg ccgcgcagga
     1501 tctcggagcc gtacgcgccg tagtgcaacc ccagcccgac gatggcgacg gtgagcggag
     1561 tcaacgcgag attgaatggc ggcaagggca acacgaagaa aagccagaat agctgtacca
     1621 gtagcgacgt accgcgaaat acttccacgt acgcgttgcc ggtccagcgc aaaacgcgcc
     1681 atgccgatgt gcgcaggacg gtcgccatgc cggccatcac gattgccagc aagatcccgg
     1741 acaccgcgat ctcgacggtg gcgaacgtgc ccttcatcaa caggggcaag agttcatgca
     1801 agtcacccat ggcattcctc gtttggcgta gaggcagtga gaggaggtga tagccggcag
     1861 gtgccggctc gtcaaacgaa gacggtcagc cgccgcaaag ttgcgcggtg gtcttgtccg
     1921 gcaggttgct cttattgaag ccaaacgggg cgaccgtctt gagatgatcc ggcgtaccga
     1981 gc
//
LOCUS       DATGBK010001714         2220 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_320778, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001714 DATGBK010000000
VERSION     DATGBK010001714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_320778"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VKJ77_24110"
     CDS             <1..296
                     /locus_tag="VKJ77_24110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase fold domain-containing
                     protein"
                     /protein_id="HMC48424.1"
                     /translation="DKDRDDWRFAPLDAREPMPDFTGVAPSWIAAADHDPLFDEDVAY
                     AAKLERADVLVELVRYEGMTHEFFKMGGFVPDVAKAHADAADALRRYMNVTEK"
     gene            complement(351..1181)
                     /locus_tag="VKJ77_24115"
     CDS             complement(351..1181)
                     /locus_tag="VKJ77_24115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NRDE family protein"
                     /protein_id="HMC48425.1"
                     /translation="MCLIVFDWQPDAAASDADRPLLTLAANRDEFFRRETEPLHWWEN
                     APEVLAGRDLTGGGTWLGVTRDGRFAALTNYRAPAEVRPNAPTRGTLVSDFLSGAPVA
                     PMAYLDAVARDGHRYNGFNLVVGDFTRRELAWYGNRADAPPSLLDPGIHGLSNSLLDT
                     PWPKLVAQRDALRDLLHVDERPSLDSLIETMRNPQLADDHLLPSTGLSLERERVLPAA
                     FIESEGYGTRSTTALRVAAVDGDLTLQIKEISDDDGSHNIQRPGSFEQGDAFTIVRTA
                     "
     gene            complement(1203..2189)
                     /locus_tag="VKJ77_24120"
     CDS             complement(1203..2189)
                     /locus_tag="VKJ77_24120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HMC48426.1"
                     /translation="MNSPTVSPLSSSFDAALHAGVFVPLTQFGIIDTTGDDAAAFLHT
                     QLTSDVQHLDASSARLAGYCSPKGRLLASFLMWRCGEAVRLMLAADIQASVQKRLSMF
                     VMRAKAKLVDATPSLAAVGFAGDVRKTLSHLFDAMPDGVHVKVDGPLGSLIRVPDAAG
                     RPRFLWVGPKAQVEARLAEMEKQLTRGPAELWDWLDIHAGEPRITQPTSEHFVPQMVN
                     FDVLGGVNFKKGCYPGQEVVARSQYRGTIKRRTSLAHAETAKPGDELFHSDDPGQPCG
                     LVVNVAPAPGGGVDALVEIKLAALEQGSVHVGSAEGLALKFSPLPYALPSEV"
BASE COUNT          450 a          685 c          700 g          385 t
ORIGIN      
        1 acgacaaaga ccgcgacgac tggcgtttcg ccccgctgga tgcacgcgaa ccgatgccgg
       61 atttcaccgg cgttgcccct tcgtggatcg ctgccgccga tcacgatccg ctcttcgacg
      121 aagacgtggc ctatgcggcc aagcttgaaa gggcagacgt cctggtcgaa ctggtccgct
      181 acgaaggcat gacgcacgag ttcttcaaga tgggcggttt cgtgccggac gtggcgaaag
      241 cgcatgcgga cgcggcagat gcattgcgtc gatacatgaa cgtcacagag aaatagaact
      301 cggcgccgag aactttacgc gcacaaagtt tcgctctgag tgcaacggtg ctaagccgtc
      361 cgcacgatcg tgaatgcatc gccttgttca aacgagccag gacgttggat gttatgtgaa
      421 ccatcgtcgt cgctgatttc cttgatctgc agcgtcaagt caccgtcaac cgccgctacc
      481 cgcaacgccg tcgtactgcg cgtgccgtaa ccctcggatt caataaacgc cgccggcaac
      541 acacgctcgc gctctagcga gagaccggta gacggcagca gatggtcatc ggcgagttgg
      601 ggattgcgca tggtctcgat caagctgtcc agcgacggcc gttcatcgac atgaagcaga
      661 tccctcagcg cgtcgcgttg cgcgacgagt ttgggccagg gtgtgtcgag caggctattc
      721 gacaacccgt gaatgccggg gtcaagcagt gagggcggag catcggcacg attgccgtac
      781 caggccagtt cgcgccgcgt gaagtcgccg accaccagat tgaagccgtt gtaccgatgc
      841 ccgtcgcggg ccactgcgtc cagataggcc atcggtgcga ccggtgcgcc ggataaaaag
      901 tcgctgacca aggtaccgcg agtcggcgcg ttgggccgca cttccgccgg tgcccgatag
      961 ttcgtcaacg cggcaaaacg gccgtcgcgc gtgacgccga gccaagttcc gccgcccgtc
     1021 aggtcgcgtc cggcgagcac ttccggtgcg ttttcccacc agtgcaacgg ctcggtttca
     1081 cgacgaaaaa actcgtcgcg attggccgcg agcgtgagca acggacgatc agcatcagac
     1141 gccgcggcgt ccggttgcca atcgaagaca atcaggcaca tgagcgaacc atccgcaata
     1201 aatcagactt cgctcggcag cgcatacggc agcggcgaga atttcagcgc gagaccctcc
     1261 gccgatccga cgtgtaccga tccctgttca agcgctgcga gcttgatttc cacgagcgca
     1321 tccacgccgc cgccgggcgc gggcgccaca ttgaccacga ggccgcacgg ctggcccggg
     1381 tcgtcggagt ggaacagttc gtcgccgggc ttggcggttt cagcatgggc cagcgacgtg
     1441 cggcgcttga tcgtgccgcg atactggctg cgcgcgacca cttcctgccc cggataacac
     1501 cccttcttga agttgacgcc gccgagcaca tcaaagttga ccatctgcgg gacgaaatgc
     1561 tcggaagtcg gctgcgtgat gcgtggttcg cctgcgtgaa tgtcgagcca gtcccataac
     1621 tcggctggcc cgcgcgtgag ctgtttttcc atctcggcga ggcgcgcttc aacttgggct
     1681 ttcggaccga cccacaggaa gcgcggccgg ccggcggcat cggggacgcg gatcagcgag
     1741 ccgagcggac cgtccacttt cacatgcacg ccgtcgggca tggcgtcgaa gagatgggac
     1801 agcgtcttgc gcacatcgcc ggcaaaaccg accgcggcga gcgacggcgt ggcgtcgaca
     1861 agtttcgctt tcgcacgcat cacgaacatc gacaaccgtt tttgcaccga tgcctggatg
     1921 tcagcggcga gcatcagccg cacggcctcg ccgcatcgcc acatcaaaaa cgacgccagc
     1981 aagcggcctt tcggcgagca atagccggcg agacgcgcgc ttgacgcatc caggtgctgg
     2041 acgtcgctcg tcaattgcgt gtgaagaaaa gcagcggcgt cgtcgccagt ggtgtcgata
     2101 atgccgaact gcgtcagcgg cacgaaaacg ccggcgtgaa gggcggcgtc gaaggaagat
     2161 gaaagcggtg agacggtcgg ggaattcatg aactgacttt gacggatgcg aacgaagtta
//
LOCUS       DATGBK010001715         1564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_19977, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001715 DATGBK010000000
VERSION     DATGBK010001715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19977"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /locus_tag="VKJ77_24125"
     CDS             complement(<1..364)
                     /locus_tag="VKJ77_24125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004553747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4390 domain-containing protein"
                     /protein_id="HMC48427.1"
                     /translation="MTIKRFFSLRLAPAGQAVLAMLLSLALSFMPVSAAQADPIAVQR
                     ASLQADGSGWSIDARFDFDLNSSLEDAVNKGVPLYFTTDFNLSRPRWYWFDEEPVNVS
                     QSIRLSFQPLTREYRVSTG"
     gene            complement(361..>1564)
                     /gene="rsmB"
                     /locus_tag="VKJ77_24130"
     CDS             complement(361..>1564)
                     /gene="rsmB"
                     /locus_tag="VKJ77_24130"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HMC48428.1"
                     /translation="KLVRKAPPPHVSNVMACAFALLVDDEAHAAYTPFTVVDQAVNAI
                     AARREFAFAKGLVNAVQRSFLREREALLAEVRSNPVARFNYPAWWIDAVKRGQPDEWE
                     NILDAGNRQGPLTLRVNARRMSVAQYLDVLKAEQIEAEAAGIHAVRLKTPMAVDKIPG
                     FADGVVSVQDAGAQLAAQLLNARDGMRVLDACAAPGGKTGHVLELANVELIAVESDPG
                     RARRIGENLQRLNVHAEIRVGDAGEPSGWSDGDPFDRILADVPCSASGIVRRHPDIRW
                     LRRPTDIAALVEEQRRILSALWPLVATGGELLYVTCSIFPEEGELQAQWFGEVHEDAV
                     RLDAPGQLLPTTSRTGAAGSQVSPDPVTNSLTDNSGEAQRTRSTSTRDAEAFADHDGF
                     FYARFQKR"
BASE COUNT          302 a          505 c          480 g          277 t
ORIGIN      
        1 cgcccgtgga gacacgatat tcgcgtgtca gcggttgaaa cgacagtcgg atgctttgcg
       61 acacgttcac cggttcttcg tcgaaccaat accagcgcgg ccgcgacaaa ttgaaatcgg
      121 tggtgaaata caaaggcacg cccttgttca cggcgtcttc aaggctgctg ttgagatcga
      181 agtcgaaacg ggcgtcgata ctccagcccg atccatccgc ctgcaacgac gcgcgctgca
      241 cagcgatggg atcggcctgc gcggccgaaa cgggcatgaa cgacagcgca aggctcaaca
      301 gcatggccag cacggcctgg ccggcaggcg cgagccgtag cgagaaaaag cgtttgatcg
      361 tcaccgtttc tgaaagcgcg cgtagaagaa tccgtcatgg tccgcaaagg cttccgcgtc
      421 ccgcgtcgat gtagagcggg tacgttgcgc ctcgcctgaa ttgtccgtca gcgagttcgt
      481 gaccgggtcc ggtgatactt gcgaaccagc cgcgccggtg cggctggttg tcggcaataa
      541 ttgccccggc gcgtccaatc gtaccgcatc ttcgtgcacc tctccaaacc actgcgcctg
      601 caactcgccc tcttcgggga agatcgagca cgtaacgtag agcaactcgc cgccggtcgc
      661 gaccagcggc cagagcgcgg agagaatgcg gcgctgctct tcgaccaacg cggcgatgtc
      721 ggtgggacgg cgcaaccagc gaatgtcagg atgacgccgc acgatccccg atgccgaaca
      781 cggcacgtcg gcaagaatgc gatcgaacgg atcgccgtct gaccagcccg acggttcacc
      841 ggcatcgcct acgcgaattt ccgcgtgcac gttcaggcgc tgcaggttct ctccgatacg
      901 ccgtgcgcgc cccggatcgc tttccacagc gatcaattcg acgttcgcca gttccagcac
      961 gtggcccgtc ttgccaccgg gcgcagcgca tgcatcgagc acgcgcatgc cgtcgcgcgc
     1021 gttcagcaac tgcgcagcga gttgcgcacc ggcgtcctga accgagacaa caccgtcagc
     1081 gaaaccgggg atcttgtcga ccgccatcgg cgtcttgagg cgcacggcgt gaatgcccgc
     1141 agcttcggct tctatctgtt cggccttgag gacgtcgaga tattgcgcga cgctcatgcg
     1201 ccgggcgttc acgcgcaacg tgagcgggcc ttgccggtta ccggcgtcca ggatgttttc
     1261 ccattcgtcg ggctggccgc gcttgaccgc gtcgatccac caagcgggat agttaaagcg
     1321 cgcgactggg ttgcttcgaa cctcggctaa caacgcttca cgctcgcgca ggaacgagcg
     1381 ctgcaccgcg ttgacgagac ccttcgcgaa cgcgaattcg cgtctagcgg cgatcgcgtt
     1441 gacggcttga tcgacaacag tgaaaggcgt gtacgccgcg tgggcttcat cgtcgaccag
     1501 cagcgcaaac gcgcaggcca tcacattcga tacatgcggc ggcggcgcct tgcgcaccag
     1561 tttc
//
LOCUS       DATGBK010001716         2778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_275510, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001716 DATGBK010000000
VERSION     DATGBK010001716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275510"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..1635
                     /locus_tag="VKJ77_24135"
     CDS             289..1635
                     /locus_tag="VKJ77_24135"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: protein motif:HMM:TIGR02037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HMC48429.1"
                     /translation="MSLLPFLLLMLLAAPAAPAALPLNQKGVPTLAPMLAQVTPAVVN
                     ISVLTHSPMEDNPLFRDPLFRRFFNIPDSASQGEQSAGSGVIVDRAHGYVLTNNHVIN
                     NAQEVVVTLKDRRALKARLVGTDPGTDIAVLKIEAQNLTELKFGDSDAMNVGDFVVAI
                     GNPFGIGQTVTSGIVSALGRTGLGIEGYEDFIQTDASINPGNSGGALVNLAGELIGIN
                     TAILGPSGSSVGIGFAVPTNMVRKVMEQIIRYGEVRRGRVGVVTQDMTHELAQSLAAG
                     SADGAVVVKVEKGSPADKAGLKLRDIVTGVNGKPVRGSADLRNRMGLIPVGEEAELRV
                     QRSGRPIMLHLRIAELFTATEIPGEAVPQLAGVRVSNIESGMPAYGMVEGAMVTRIEP
                     NTPGAKTGLHPGDVLYGVNSSRVRSAAELLASLRKTERPLRIFLLRGDSRLTLTIR"
     gene            1724..2458
                     /locus_tag="VKJ77_24140"
     CDS             1724..2458
                     /locus_tag="VKJ77_24140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 family protein"
                     /protein_id="HMC48430.1"
                     /translation="MTAKTKRKPASVSIHSERFPGESADYRAARDKLLKAELNLRRDL
                     EKVAAMRRQLPPGGPVPQDYVFEQGSADADDIESVRTVRMSELFVRPKASLVVYSFMY
                     GPKMAKACPSCTSMLDSLDGAAPHATQRINLVVVAKSPIQRIRAYARERGWRNLRLLS
                     SANNSYNRDYHGEDDKGSQWPALNVFARHGRKIHHTFCTELLFAPSESGQDGRHVDVI
                     WPLWNLLDFTPEGRGTDWRPKLEYES"
     gene            2504..>2778
                     /locus_tag="VKJ77_24145"
     CDS             2504..>2778
                     /locus_tag="VKJ77_24145"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HMC48431.1"
                     /translation="MKLYGFPPSPNTRKVQAVAAHLGIPLEFQLVDITKGQSRTPEFL
                     AINPNGRTPVLVDGDFTLWESNAIMQYIAGKKPNTMWPEGARVRADIA"
BASE COUNT          530 a          889 c          872 g          487 t
ORIGIN      
        1 cgccgcggta tcgccgttgc cgtgcacgaa tacgatgggc ggctggtccg ccgcgttcgg
       61 gtgaagtccg gcacaggccg ccagcatgag cgacagcaac agcggcagcg aacgggcgcg
      121 gcgcagcaag tcagacatgg ctttctccaa agtcggcgtt acgattgatc attggaatat
      181 acatcagctt cgagccgggc tgcacggcgg gcttcgcagc gcttatactg cgtagccgat
      241 tccgcaccgt tttctccgga ctgattgtcg atgcgcctga gcactatcgt gtccctgctc
      301 ccgttcctgc tgctgatgct gcttgccgcg cccgcggccc ccgctgcact gccgctcaat
      361 cagaagggcg tgcccactct cgcgccgatg ctggcgcagg tgacgccggc cgtggtcaac
      421 atctccgtgc tcacgcactc gccgatggag gacaacccgc tgtttcgcga ccctctgttc
      481 cggcgctttt tcaacattcc cgatagcgcc tcgcagggag agcagagcgc cggctcgggc
      541 gtgatcgtcg accgcgcgca cggctacgtg ctcaccaaca atcacgtcat caacaatgcg
      601 caggaagtgg tggtgacgct gaaggacaga cgcgcgctca aggcgcggct ggtcggcacc
      661 gatccgggca ccgacatcgc cgtgctgaaa atcgaggcgc agaacctgac cgagctcaaa
      721 ttcggcgatt ccgacgccat gaacgtgggc gatttcgtgg tcgccatcgg caaccccttc
      781 ggcatcggtc agacggtcac ctccggcatc gtcagcgcgc tcggccgcac cggcttgggc
      841 atagaaggct acgaggactt catccagacc gacgcctcga tcaacccggg caattcgggc
      901 ggcgcgctgg tcaacctcgc gggcgaactg atcggcatca acacggccat cctcggcccc
      961 tcaggcagca gtgtcggcat cggttttgcc gtgcccacga acatggtgcg caaagtaatg
     1021 gagcagatca tccgctacgg cgaagtgcgc cgcggccgcg tcggtgtggt cacgcaggac
     1081 atgacgcacg aactggcgca atcgctggcg gcgggctcgg ccgacggcgc cgtggtggtc
     1141 aaggtcgaga aaggttcgcc cgcggacaag gccggtctca aactgcgcga tatcgtgacc
     1201 ggcgtcaacg gcaagccggt gcgcggctcg gccgatttgc gcaaccgcat gggcctcata
     1261 ccggtcggcg aagaagcgga actgcgggtg cagcgcagcg gccggccgat catgctgcac
     1321 ctgcgcatcg cagagctctt caccgcgacc gagattccag gcgaggcggt gccacagctt
     1381 gccggcgtgc gcgtgtccaa tatcgagtcc ggcatgcccg cgtacggcat ggtcgagggc
     1441 gcgatggtca ctcgcatcga acccaatacg cccggcgcaa agacgggctt gcaccccggt
     1501 gacgtgctct acggcgtcaa cagcagccgg gtgcgctcgg cggcggagtt gctcgcttcg
     1561 ctgcgcaaga cggaacggcc gctgcgtatc ttcctgctgc gcggcgactc gcgcctgacc
     1621 ctgaccatac gctaaactga tcgccaccag cacggctggg acgcttgcat cggccggctg
     1681 gaacgattcc ttgcttaagt cacaatttcc cggagggctg aaaatgactg cgaaaaccaa
     1741 gcgaaaaccc gcatctgtct cgattcattc cgaacgtttt ccaggcgaga gcgcggatta
     1801 tcgtgcggcg cgcgacaagc tgctcaaggc cgagttgaat ctgcgccggg acctggaaaa
     1861 agtcgcggcc atgcggcgcc agttgcctcc gggcggaccg gtcccgcagg actacgtgtt
     1921 cgaacaagga tctgcggacg cggacgacat cgaatcggtg cggaccgtgc gcatgtcgga
     1981 gttgttcgtc cgacccaagg cgagcctcgt cgtttatagc ttcatgtatg gtccgaagat
     2041 ggcgaaagcc tgcccgagct gcacttcgat gctcgacagc ctggacggtg ccgcgccgca
     2101 cgcgacccag cgcatcaacc tggtggtcgt ggcgaagtcc ccgatccagc gcatccgcgc
     2161 atacgcgcgc gagcgcggct ggcgcaattt gcgcctgcta tcctcggcca acaactctta
     2221 caaccgggac tatcacggag aagacgacaa gggttcccag tggccggccc tgaacgtttt
     2281 cgcgcggcac gggcgcaaaa ttcatcacac cttctgcacc gagttgctgt ttgcgccgag
     2341 cgaatccggg caggacggcc ggcacgtcga tgtgatctgg cctttgtgga acctgcttga
     2401 tttcacgccg gaagggcgcg gtaccgattg gcgtccgaag ttggaatacg agtcgtagcg
     2461 ggctcggcaa taaccatgga accattcttt caaggaggtt gaaatgaagc tctacggttt
     2521 tcccccttca ccgaacacgc gcaaggttca ggcagtcgcg gcgcacctgg gcattcctct
     2581 cgaattccag ttggtggaca tcaccaaggg ccaatcgcgc acgccggaat tcctcgcgat
     2641 caatcccaac ggcaggacgc cggtgcttgt cgacggcgat ttcacgctgt gggaatcgaa
     2701 cgcgatcatg cagtacatcg ccggaaagaa accaaacact atgtggccgg aaggcgcgcg
     2761 cgtgcgtgcc gacatcgc
//
LOCUS       DATGBK010001717         1888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_20028, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001717 DATGBK010000000
VERSION     DATGBK010001717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20028"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..617)
                     /locus_tag="VKJ77_24150"
     CDS             complement(<1..617)
                     /locus_tag="VKJ77_24150"
                     /inference="COORDINATES: protein motif:HMM:NF012973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHIPEP family type III secretion protein"
                     /protein_id="HMC48432.1"
                     /translation="MNGKITSAFAAVVLGIVAILVVPLPPLVLDALLALNIFGSALVL
                     LISLRVEEPLEFSAFAPALLLATLFRLSLDVSATRLILTEGHVAGGVGAIIPAFGQFV
                     VRGNLVVGLIIFAILITIQFIVIATGAQRVAEVCARFTLDAMPGKQMAIDADVHAGVL
                     DAEGARRKRARVQREADFYAAMDGAGKFVKGDAIAALVIVALNLVG"
     gene            complement(614..1636)
                     /locus_tag="VKJ77_24155"
     CDS             complement(614..1636)
                     /locus_tag="VKJ77_24155"
                     /inference="COORDINATES: protein motif:HMM:NF013479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscU/YscU/HrcU family type III secretion system
                     export apparatus switch protein"
                     /protein_id="HMC48433.1"
                     /translation="MSAEQAEKRFDATPARRQKATREGNSARSSEVGGIAAFACGALA
                     TFCIPPFIGSAFAESMRAFGRRPDPEHLPPSILALIAFGTLPLVAACAGATAAGLAQA
                     GGLRVIMPKWDLGKMNPIAGLKRMAGGEAVVGATRALVAFVVGAVAMWPIFTEIFGRA
                     TTVPSVAGIGFLALGGAERAFGSAIAVGALFATADYALAHRRWLKQLKMTYDEMKRDA
                     KENDGDPHTRSRRKQVHRALVRSSIQKTKDASFVLVNPTHIAIAIRYAPPQVAVPEIL
                     VRAADDQALIVKRLASELRIPIIENIPLARALYAQGEAGRAIPSDTFVAVAYVIAELV
                     REGAIA"
     gene            complement(1633..>1888)
                     /locus_tag="VKJ77_24160"
     CDS             complement(1633..>1888)
                     /locus_tag="VKJ77_24160"
                     /inference="COORDINATES: protein motif:HMM:NF013478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HMC48434.1"
                     /translation="HFALALPTTIVHAALMMAAPAIAVAATVQLSLAAIARVVPRFSS
                     FTLSFPLVFAAALLITIASVPLFAPLAAHPWLLVPYGGAK"
BASE COUNT          408 a          611 c          563 g          306 t
ORIGIN      
        1 ccaacaagat tgagcgcaac gatcaccagt gccgcaatag catcgccttt cacgaatttt
       61 ccggcgccgt ccattgcggc gtagaaatcg gcttcacgtt gtacgcgcgc gcgcttgcga
      121 cgcgcgcctt ctgcatccag gactcccgcg tgtacgtcgg catcgatcgc catttgcttg
      181 ccgggcatcg cgtcgagcgt gaagcgcgcg cagacttcgg ccacgcgctg cgcgcctgtc
      241 gcgatgacga tgaactgaat cgtaatgaga atggcaaaga tgatcagtcc gacaacgagg
      301 ttcccgcgca cgacgaattg accgaacgcc ggaatgattg cgcccacgcc gcccgctacg
      361 tgcccttcgg ttagaatcag ccgcgtcgca ctgacgtcga gcgataggcg aaagagcgtc
      421 gccagcagta acgccggcgc gaaggcggaa aattcgagcg gctcttcgac acgcaggcta
      481 ataagcaaca ccaacgcgga gccgaaaatg ttgagcgcga gcaacgcatc gagcacgagc
      541 ggcggcagcg gcacaacgag aatcgcgacg atccccagca cgacggcggc aaaagccgaa
      601 gtgatcttcc cgttcatgca atcgctcctt cgcggacgag ttcggcgatc acataggcga
      661 ccgcaacgaa cgtatcactg ggaatggccc ggcccgcttc gccctgcgcg tacagcgcac
      721 gcgccagcgg aatattctcg ataatcggaa tcctcagctc gcttgccaaa cgtttgacga
      781 taagcgcctg atcgtcagcc gcccgcacga ggatttccgg tacggcgacc tgcggcggtg
      841 cataccggat ggcgatcgca atatgcgtcg ggttaacgag cacgaacgac gcatctttgg
      901 ttttctgaat tgaactgcgc acgagcgcgc gatgcacctg tttgcggcgc gaccgtgtgt
      961 gcgggtcgcc gtcgttctct tttgcgtcgc gcttcatctc gtcgtaggtc atcttgagct
     1021 gtttgagcca acgccgatgg gccagcgcgt aatcggccgt cgcaaagagc gcgccaacag
     1081 cgatggccga accaaatgcc cgttccgcac cgcccaacgc gagaaaaccg atgccggcga
     1141 cgctaggaac cgtcgtcgcg cgcccaaaga tttcggtgaa tatcggccac atcgcgaccg
     1201 ctccaaccac gaacgcgacg agcgcacgcg tcgctccgac aacggcttca ccgccggcca
     1261 tccgcttcag gcccgcgatg gggttcatct tacccagatc ccatttcggc atgatgaccc
     1321 gcaggccacc cgcttgcgcg agccccgccg cggtggcacc ggcgcacgct gcaacaagcg
     1381 gcaacgtgcc aaaggcgatg agtgcaagta tcgacggcgg aagatgttcg ggatcgggcc
     1441 gccttccgaa cgcacgcatc gattcggcga acgcgctacc gataaacggc ggaatgcaga
     1501 acgttgcaag cgccccgcac gcaaatgcag cgataccgcc cacctcactc gagcgggccg
     1561 agttcccttc gcgtgtcgcc ttctgccgac gcgcgggcgt agcatcaaat cgtttctccg
     1621 cttgttcggc actcatttgg caccgccgta cggcacgagc agccacggat gcgcggctaa
     1681 gggcgcaaac aacggtacgc tcgcgatcgt aatgagcagc gctgctgcaa agacgagcgg
     1741 aaacgataac gtgaaacttg agaagcgcgg cacgacgcgc gcgatggccg caagcgaaag
     1801 ctgcaccgtc gcagcgaccg caatcgccgg cgcagccatc atgagcgcgg catggacgat
     1861 cgtcgtgggc aacgctaacg caaagtga
//
LOCUS       DATGBK010001718         1799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_298105, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001718 DATGBK010000000
VERSION     DATGBK010001718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298105"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..182
                     /gene="rplC"
                     /locus_tag="VKJ77_24165"
     CDS             <1..182
                     /gene="rplC"
                     /locus_tag="VKJ77_24165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192480.1"
                     /note="binds directly near the 3' end of the 23S rRNA,
                     where it nucleates assembly of the 50S subunit; essential
                     for peptidyltransferase activity; mutations in this gene
                     confer resistance to tiamulin; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HMC48435.1"
                     /translation="TPKGSRRPGHYGVDRTTQQNLEVVRTDVERNVLLVRGPVPGPKN
                     GLVIVSLSVKTKASA"
     gene            182..844
                     /gene="rplD"
                     /locus_tag="VKJ77_24170"
     CDS             182..844
                     /gene="rplD"
                     /locus_tag="VKJ77_24170"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HMC48436.1"
                     /translation="MPSVIDAHGNVVREEATPAIFNAEANGGKGNLIFRAVFRELASP
                     RAGTAKTKKRDEVRGGGRKPWKQKGTGRARQGSTRSPQWRHGGVVFGPQPRSYVSSLN
                     KKERRAAFIAALTDRFAAGAVTLMDATGFNLTKTKDFATLLFGSPKAAKTGPKTLVVF
                     AESEMDGLGENLLRAGGNLQAVGITHNGALDVKDVVRYTRIIMTVEAYNAIVTRFTPE
                     TK"
     gene            844..1152
                     /gene="rplW"
                     /locus_tag="VKJ77_24175"
     CDS             844..1152
                     /gene="rplW"
                     /locus_tag="VKJ77_24175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005674267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HMC48437.1"
                     /translation="MDARDVVIAPLITEKSMLNTAVQQYSFEVHLLASKTQIKHAIQE
                     IFKVSVLKINTVTIPGKKKNFARKGVRTSGTRSNWKKAIVTIAAGQKIELDGVNYFEQ
                     "
     gene            1202..>1799
                     /gene="rplB"
                     /locus_tag="VKJ77_24180"
     CDS             1202..>1799
                     /gene="rplB"
                     /locus_tag="VKJ77_24180"
                     /inference="COORDINATES: protein motif:HMM:TIGR01171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HMC48438.1"
                     /translation="MTTMDFSELTDKKPERGLVEVKKKHSGRNNNGHITVRHKGGGWR
                     KQYRIIDFKRTKDAIPAKVAAIEYDPNRSARIALLNYRDGEKRYILAPAGIAIGDVVE
                     SGPKADIKLGNCLPIANIPLGTILHNIELRPGEGGKLVRSAGGSAQLMAKEGDYAQVR
                     MPSGEVRKILMVCRATIGQLGNVDHENEVVGKAGRKRHR"
BASE COUNT          422 a          540 c          530 g          307 t
ORIGIN      
        1 acacgcccaa aggttcgcgt cgcccgggtc actacggcgt cgaccgcacc acgcagcaga
       61 atctcgaagt tgtccgcacg gacgtcgagc gtaacgtgct gctcgttcgc ggcccggttc
      121 ccggaccgaa gaacggcctt gtgatcgtaa gcctctccgt taaaacgaaa gcgagcgcgt
      181 aatgcccagt gtaatcgacg cgcacggcaa tgtcgttcgt gaagaagcga cgcccgcgat
      241 ctttaacgcc gaagctaacg gcggcaaagg caacctgatt ttccgcgccg tgttccgcga
      301 gcttgcaagc ccgcgcgccg gcacggccaa gaccaagaaa cgcgacgaag ttcgcggcgg
      361 cggtcgtaag ccgtggaagc aaaagggcac cggacgcgcg cgtcagggtt cgacgcgttc
      421 accgcaatgg cgccatggtg gcgtcgtgtt cggtccgcaa ccgcgcagct acgtcagctc
      481 gctcaataag aaagaacgcc gcgccgcgtt catcgccgca ctgaccgacc gctttgcggc
      541 gggcgccgtg acgctgatgg atgcgacggg cttcaacctc accaagacca aagatttcgc
      601 aacgctgctc ttcggttcgc cgaaggccgc gaagaccggc ccgaagacgc tcgtcgtgtt
      661 cgccgagtcc gagatggacg gcttgggtga aaatctgttg cgcgcaggcg gcaatttaca
      721 agccgtcggc atcacgcaca acggtgcgct cgatgttaaa gacgtcgtgc gttacacccg
      781 catcatcatg acggtcgaag cgtataacgc gatcgttacg cgcttcaccc cggagacgaa
      841 gtaatggacg cccgcgacgt cgttattgcc ccgctgatca ccgagaagtc gatgctgaac
      901 accgctgtgc agcagtacag ctttgaggtg catctgcttg caagcaagac gcagatcaag
      961 cacgccattc aagaaatctt caaggtgtcg gttcttaaga tcaacaccgt cacgattcca
     1021 ggcaagaaga agaacttcgc gcgcaaaggc gttcgcacgt cgggtacgcg ctcgaactgg
     1081 aaaaaagcca tcgtcactat tgctgccggc caaaaaatcg agttggacgg cgtcaactac
     1141 tttgagcaat aaataaatgc cagttaaaaa atataagccg acttcggccg gccggcgctt
     1201 catgacgacg atggacttct ccgaacttac ggacaagaag cccgaacgcg gcctggttga
     1261 agtcaagaag aagcacagcg gtcgcaacaa caacggccac atcaccgtcc gtcacaaggg
     1321 cggcggctgg cgcaagcaat atcgcatcat cgacttcaag cgaacgaagg atgcgattcc
     1381 ggccaaggtc gcggcaatcg agtacgatcc caaccgttcg gcccgcattg cgctgctcaa
     1441 ctatcgcgac ggcgagaagc gctatattct ggcgccggcc ggtatcgcga tcggcgacgt
     1501 ggttgaatca ggcccgaagg cggatatcaa actcggcaac tgcttgccga ttgcgaacat
     1561 cccgctcggt acgattctgc acaacatcga actgcgtccg ggcgagggcg gcaagctcgt
     1621 tcgctcggcc ggtggttcgg cgcagctgat ggccaaagaa ggcgactacg cccaagtgcg
     1681 tatgccctcg ggcgaagttc ggaagatctt gatggtctgc cgcgcgacga tcggccagct
     1741 cggcaacgtg gatcacgaaa acgaagtcgt cggcaaagcc ggacgcaaac gtcatcgcg
//
LOCUS       DATGBK010001719         3275 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_136030, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001719 DATGBK010000000
VERSION     DATGBK010001719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136030"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            236..550
                     /locus_tag="VKJ77_24185"
     CDS             236..550
                     /locus_tag="VKJ77_24185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012363570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HMC48439.1"
                     /translation="METIAFRMTLKPGRRDEYERRHRDIWPELAEALRHAGIRDYRIF
                     LDETTGHLFATLKRERDHTMDGFPDLPIMRKWWDSMADLMETNPDRSPEQAALVPVFH
                     LP"
     gene            589..1479
                     /locus_tag="VKJ77_24190"
     CDS             589..1479
                     /locus_tag="VKJ77_24190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018425426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC48440.1"
                     /translation="MQVVDPHIHLWDLKTHHYPWLANPGRSFVGDARELKHDYLISDL
                     LRDAGPVQVLKLVHVDANHDPADPVEETRWLQHVADNEGHGLPTAIVAGADLSADNAQ
                     EVLEGHAAFANTRGIRQILNVHANPLYDYVGRHYMREPQWRNNFALLKKYSMSFDLQL
                     YPSQMKEAAELAQEHPDTQFIVNHAGMFVDRSSVEGFRAWRDGLRALAACPNVAVKIS
                     GLAMFDHQWSIESFRPYVLATIDTFGCERAMFASNFPVDRLFATYEGLWNAYASIVKD
                     LSDIEKEGLFKSNAERIYRI"
     gene            1490..3013
                     /locus_tag="VKJ77_24195"
     CDS             1490..3013
                     /locus_tag="VKJ77_24195"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018425425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC48441.1"
                     /translation="MGNNNPPRLELRHASKSFGRVRALGDGSLALWPGEVHALLGENG
                     AGKSTLVKLLAGVYQPDSGELLVDGQACTFANPAEARDAGLAVIYQEPTLFADLSIAE
                     NIYIGRQPRDRLGRIRYDEMNREVDALLQSLGVNLRAERLVRGLSIADQQVVEIAKAL
                     SLNANVLIMDEPTAALSLTEVERLFSIVRGLRERDAAILFITHRLDEVFALTQRLTIM
                     RDGLKVFDAMTADMTIDSIVSKMVGRDLDTFYPKADVVPGEVRLSVRNLTRDGVFKNV
                     SFEVRAGEIVALAGLVGAGRSEVARAIFGIDQVDAGEVHIAGKPLQLGRPQAAVRAGL
                     ALVPEDRRAQGLALELSIARNASLTVLGRLVKHGLISSRSENALAADWGKRLRLKASD
                     LDAPVGTLSGGNQQKVVLGKWLATGPKVLIIDEPTRGIDVGAKAEVYRTLAELVREGM
                     AVLMISSELPEVLGMADRILVMHEGRISADIARADANEERVMSAALGASPSMLGKAA"
     gene            3013..>3275
                     /locus_tag="VKJ77_24200"
     CDS             3013..>3275
                     /locus_tag="VKJ77_24200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48442.1"
                     /translation="MTRHSPAMPAVHAPKPKRRNLLADLVRSREATLFVVLIALVAAT
                     AAVKPEFLNLQNLRDVLLNVSIIGLLTAGMTVVMLMRHIDLSVA"
BASE COUNT          654 a          921 c         1027 g          673 t
ORIGIN      
        1 agcagcgcga gatgcttgaa tttcaggcga ttgacgaggg caatctggga gacgttctgg
       61 ttcatcgggc gtcctcgtgc gtccattctg cgattcggtt ttgcgatcgg ctgatcctga
      121 cttcggattg tcatgttatc agtcggcgaa ttatagtcgt aacgcacaag ccggaagtcg
      181 gactcgcttt atgacgatga tcaaccggtt caacacctat aaaaggcaag ccgcaatgga
      241 gacgattgcg ttcagaatga ccctcaaacc gggccggcgc gatgaatacg agcggcgtca
      301 tcgcgacata tggcccgagc tggccgaggc gttacgtcac gccggaatcc gcgactaccg
      361 gattttcctc gacgaaacta cagggcacct ctttgccacg ctcaagcgtg agcgcgatca
      421 caccatggac gggtttcccg atctgcccat catgcgcaaa tggtgggaca gcatggctga
      481 cctgatggaa acaaaccctg accgctcgcc ggagcaagcc gcgctcgtgc cggtcttcca
      541 tctaccctga cgcttttgct tcagccttcg cggcacgagg acatatccat gcaggttgtc
      601 gatccgcaca ttcacctttg ggatctgaag acgcatcact atccgtggtt ggcgaacccg
      661 ggtaggtcgt tcgttggcga tgcacgcgag ctcaagcacg actacctgat cagtgatttg
      721 ctgcgcgacg ccgggccggt gcaggtgctc aagctcgtgc atgtggatgc caatcacgat
      781 cccgctgatc cggtggaaga aacgcgctgg ctccaacatg ttgccgataa cgagggccac
      841 gggttaccga ccgcgatcgt ggcgggcgcg gatttgtcgg cggacaacgc tcaggaagtg
      901 ctcgaagggc acgcggcatt cgccaatacg cgaggtattc ggcagatact caatgtgcat
      961 gccaatccac tttatgacta cgtgggccgg cactacatgc gtgaaccgca atggcgcaat
     1021 aacttcgcct tgctgaagaa gtattcgatg tccttcgatc tgcagctcta cccatcgcag
     1081 atgaaagaag cggctgagct tgcacaggaa caccccgaca cgcagttcat cgtgaatcat
     1141 gcgggtatgt tcgtggatcg ttcgtcggtg gaggggtttc gtgcatggcg tgacggtttg
     1201 cgtgcgctcg ctgcatgtcc gaatgtagcg gtgaagatca gcgggctcgc catgttcgat
     1261 catcaatgga gcattgaaag ttttcggccg tatgtgcttg caacgatcga tacgtttggt
     1321 tgtgagcgcg cgatgttcgc gtcgaacttt ccggtcgacc gtttgttcgc cacgtatgaa
     1381 gggctgtgga atgcttatgc gtcgatcgta aaagacctga gcgatataga aaaagaaggc
     1441 ctcttcaaga gcaacgcaga acgtatatat cgcatttgaa ggagacagta tgggtaacaa
     1501 caatccgcct cggcttgagc taaggcacgc gagcaagtcg tttggccgcg tgcgtgcgct
     1561 tggcgacggc agcctcgcgt tatggccggg ggaagtgcat gcgttgctcg gcgagaacgg
     1621 tgcgggcaag tcgaccctgg tcaagctgct tgccggcgtg tatcagccgg actcgggcga
     1681 attgctggtc gacggacagg cgtgtacgtt cgcgaatccc gctgaagcgc gcgatgctgg
     1741 cctcgccgtg atctatcagg aacctacgtt gttcgctgac ttgtccattg cggaaaacat
     1801 ctacattgga cgtcagccac gcgaccgtct cggccggatt cgctatgacg aaatgaatcg
     1861 tgaagtggac gcgctgttgc aatcgctagg tgtcaatctg cgcgcagaac gcctggtgcg
     1921 cggtttgtcc atcgccgatc agcaagtggt cgagatcgcc aaagcgcttt ctctgaacgc
     1981 gaatgtgctg atcatggacg agccgacagc ggcgttgtcg ctgaccgaag tggagcgcct
     2041 gttctccatc gtgcgcggat tgcgtgagcg cgacgccgcc attcttttca taacacaccg
     2101 gttggacgag gtgttcgcgc tgacacagcg cctgacgatc atgcgcgacg gcctgaaggt
     2161 cttcgacgcc atgaccgccg acatgaccat cgattcgatc gtcagcaaga tggtcggacg
     2221 cgatctcgat accttctatc cgaaagccga tgtagtaccc ggcgaggtcc gtctgtcggt
     2281 ccgtaacctg acgcgcgacg gcgtgttcaa gaacgtctcg ttcgaggtcc gcgcgggcga
     2341 gatcgtggcg ctcgcggggc ttgttggcgc ggggcgcagc gaagtggcgc gcgcgatctt
     2401 cggcatcgac caggtggatg cgggcgaggt tcatatcgcg ggcaagccgt tgcaactcgg
     2461 ccggccgcaa gccgcagtcc gcgcggggct cgcgctggtg ccggaggacc gccgtgcgca
     2521 aggtctcgcg ctggaactta gcattgcgcg caacgcgtcg ttgacggtgc tgggacgcct
     2581 cgtcaaacac gggttgatct catcacgcag tgaaaatgcg cttgccgctg actggggcaa
     2641 acgcctgcgg cttaaagcga gcgatctgga cgcgccggtg ggtacgctgt cgggcggcaa
     2701 ccagcagaag gtcgtactcg gaaagtggct ggccacaggg cctaaagtgc tgatcatcga
     2761 cgaaccgacc cgcggtatcg atgtcggggc caaggcggag gtgtatcgaa cactcgccga
     2821 actggtgcgc gaaggcatgg ccgtcctgat gatttcaagc gagctgcccg aagtgctcgg
     2881 catggccgat cgcatccttg tgatgcacga agggcgcatc agcgccgaca tcgcgcgcgc
     2941 cgatgcaaac gaagaacgcg tgatgagcgc cgcgctcggc gcatcgccgt ccatgttggg
     3001 gaaggcggca tgatgacacg acattctccc gccatgcccg ccgtgcacgc acccaaaccg
     3061 aagcgccgca acctgctggc ggacctcgtt cgcagccgcg aggcgacgtt gtttgtcgtc
     3121 ctgattgcgc tggtcgcagc taccgctgcg gtgaaacccg agttcctgaa cctgcagaat
     3181 ctgcgcgacg tcctgctcaa tgtatcgatc atcggcttgc tcaccgcggg catgacggtc
     3241 gtgatgttga tgcggcatat cgatctgtcg gtagc
//
LOCUS       DATGBK010001720         2727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_67137, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001720 DATGBK010000000
VERSION     DATGBK010001720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2727
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67137"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VKJ77_24205"
     CDS             complement(<1..519)
                     /locus_tag="VKJ77_24205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011549151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC48443.1"
                     /translation="MAGFFINRPILAWVIAIVIMMVGAASIRTLPVEQYPSVAPVSVQ
                     ITATYPGASAETVATTVTQVIEQKLSGIDKLLYMSSTSSSAGTATITLTFQQGTNADI
                     AQVQVQNKVAQASSSLPQTVQNQGVQVAKAANSFLMIVSLSSSDGSVSSIDLGNVIAT
                     QIEDPLTQIDGVG"
     gene            complement(532..1773)
                     /locus_tag="VKJ77_24210"
     CDS             complement(532..1773)
                     /locus_tag="VKJ77_24210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC48444.1"
                     /translation="MIHQVSILPTGVTRSLRTRALSAVAASVAAFSLAACGDGGSQRP
                     PQGVPEVGIETITPHPIVASTELSGRLSAVRVADVRPQVQGIVMKRLFTEGSMVAAGA
                     VLYQIDPASYQASYDQAVGTLAKAQATAEAAQTKATRYADLSKIDGVSKQDYDDAISS
                     LQEAKADVVADRAALKTAAINLGYTKIAAPIAGRIGKSSVTEGALVTAEQTTALATVQ
                     ATNEMYLDVTRSSVDWLRLQKEFASGQLQHAGNDGAVVHLVMEDGSDYSHAGKLLFSD
                     ITVDATTGSVTLRSVFPNPEGALLPGMFVRARLEEGVNQQAITVPQLAVSRSSDGSAS
                     VLTVGADSKVVQTAVTANSANGADWIITSGLKAGDRVIVSGSQKARTGALVKAVESPS
                     PSASNFDAPATAATAASATRS"
     gene            complement(2052..>2727)
                     /locus_tag="VKJ77_24215"
     CDS             complement(2052..>2727)
                     /locus_tag="VKJ77_24215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006053132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC48445.1"
                     /translation="DAEQERAVMLAGVAHDLRAPITRIQVRANLVPDITARNGFFHDT
                     ESLAQIVTQFLDFARNTETDAHAPWISVDAFCRSHYAEAEAEADIDGHDVLARDPLFV
                     LDLKAGDDFRLPAVELDRILSNLVENAFTYGAPPLCIATSRNNGCDRLSVRDHGKGMP
                     EAHFARALRPFVRIDPARGGDAHCGLGLTIVRRLTRRYGGDLSMHNADGGGLAVVLDF
                     PLRVRA"
BASE COUNT          483 a          822 c          904 g          518 t
ORIGIN      
        1 gcccacgccg tcgatctgcg taagcgggtc ttcgatctgg gtcgcgatga cgttgccgag
       61 atcgatggag ctcacgctgc catcggagga cgagagtgag acgatcatca ggaacgagtt
      121 ggccgccttg gccacctgca ccccctggtt ctgcacggtc tgcggcaacg acgagcttgc
      181 ttgcgccacc ttgttttgca cctgcacctg cgcgatgtcc gcgttggtgc cctgctggaa
      241 ggtgagcgtg atggtcgccg tcccggcgga gctgctggtg gaggacatat acagcagctt
      301 gtcgatgccg ctcagtttct gttcgatcac ctgcgtaacc gtagtcgcta cggtttcggc
      361 tgaagcgccg ggataggtcg ccgtgatctg cacggacacc ggcgcgacgc ttggatattg
      421 ctcgaccggt agcgtgcgga tggacgctgc accgaccatc atgatgacga tggcgatgac
      481 ccacgcgaga atcggtcggt tgatgaaaaa gcctgccatg aggttctcgc tttaactgcg
      541 ggttgccgac gcggccgtcg ccgccgtagc gggggcatcg aaattcgaag cggaagggga
      601 ggggctttcg accgctttaa cgagcgcgcc ggtgcgcgct ttctgcgatc ccgacacaat
      661 cacccggtcg ccggccttca ggccgctcgt gatgatccag tccgcgccgt tggcgctatt
      721 ggcggtcacg gccgtctgca cgaccttgct gtcggcgccg accgtgagca cgctggcgga
      781 gccgtccgat gagcgcgaca ccgccagttg cggcaccgtg atcgcctgct ggttcacgcc
      841 ttcttcgagc cgcgcgcgca cgaacatgcc cggcagcagc gcgccctcgg gattcgggaa
      901 cacgctgcgc agcgtgaccg aaccggtggt ggcgtcgacg gtgatatccg agaacagcag
      961 cttgccggca tgcgaatagt cgctgccgtc ttccatcacc aggtgcacga ctgcgccgtc
     1021 gttgccggca tgctgcaact ggccactcgc gaattccttt tgcaggcgca gccagtcgac
     1081 cgatgaacgg gtgacatcga gatacatctc gttggtcgct tgaacggtgg cgagcgccgt
     1141 agtctgctcg gccgtgacaa gcgcgccctc agtcacgctc gacttgccga tacgcccggc
     1201 gatcggcgcc gcgatcttcg tgtaacccag gttgatcgca gcggttttca atgctgcgcg
     1261 atcggcgacc acgtcggcct ttgcttcttg cagcgacgag atggcgtcgt cgtagtcctg
     1321 cttgctcacg ccgtctatct tcgataaatc tgcgtaacgc gtcgctttgg tttgcgcggc
     1381 ctcggccgtg gcttgcgcct ttgcgagcgt cccgacggcc tggtcgtaac tcgcctgata
     1441 gctggccgga tcgatctggt agagcacggc gcccgctgcg accatcgagc cttcggtgaa
     1501 gagccgcttc atgacgatgc cttgcacctg aggcctgacg tcggccacgc gtacggcgga
     1561 cagacggccg gacagttcag tgctggctac gatcggatgc ggggtgatgg tttcaatgcc
     1621 gacttcgggc acgccctgtg gcggacgctg tgaaccgccg tcaccacatg cggcgagcga
     1681 aaacgcggcc accgaagcgg caacggccga gagtgcacgc gtgcgtagcg agcgtgtgac
     1741 cccggtagga agtatggaga cctgatggat cattctggtc atgtggtgag catccttcga
     1801 tcaaggttcg ataaagggcc gccgggcaga catcgatgcg caggtctttc aaaaaacgcg
     1861 agggagagcg aagaagggtt gcctcaagag gcgctcgacc gggccacctt ggctcgggga
     1921 aaccgcgcaa cgccatgcca gcggcaaggg atgacacgag cttaacgagc gacgtcttag
     1981 gctggcttag tgattgatta catgatgtaa cgttgccgcg agcgggcgta cacccatacg
     2041 ccgcaacggc atcaggcgcg aacgcgcaag gggaagtcga gcacgactgc gaggccgccg
     2101 ccgtcggcat tgtgcatgga tagatcgccg ccatatcgac gcgtcaggcg tcgcacgatc
     2161 gtcagtccca ggccgcaatg cgcgtcgcca ccgcgagcgg gatcgatccg tacgaagggt
     2221 cttagcgcac gcgcgaagtg ggcttcgggc atgcccttgc catggtcgcg cacgctcagg
     2281 cggtcacatc cgttgttgcg cgacgtcgcg atgcaaagcg gcggcgcacc gtaagtgaag
     2341 gcgttttcca cgaggtttga gagtatccga tccagttcaa cagcaggcag gcggaagtcg
     2401 tcgcctgcct tcaggtcgag tacgaagagc gggtcccgtg cgagcacgtc gtggccgtcg
     2461 atatcggctt cagcttccgc ttccgcgtaa tgcgaacggc agaacgcatc gactgaaatc
     2521 cacggagcgt gcgcgtctgt ttcggtgttg cgggcgaagt cgaggaattg cgtgacgatc
     2581 tgcgcaagcg attcagtgtc gtggaaaaaa ccgttgcgcg cggtgatgtc cggcacaagg
     2641 ttcgcgcgga cctggatgcg cgtgatcggt gcgcgcaggt catgcgccac gccggccaac
     2701 atgaccgcgc gctcctgttc ggcgtcg
//
LOCUS       DATGBK010001721         2231 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_229199, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001721 DATGBK010000000
VERSION     DATGBK010001721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229199"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..716
                     /locus_tag="VKJ77_24220"
     CDS             240..716
                     /locus_tag="VKJ77_24220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007740632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HMC48446.1"
                     /translation="MEQNMHRHIYLAAIPAAFVAGLFVSHLSTPAQAQTPDSKLTAQI
                     IDLMAITDADLGAQVPNMGTLRSKGLAVTSNGTVAVQTGNVPKHTHMGSDEIQYVISG
                     SGTFWLGNEQHPIHAGDLIIVPKGTAHAGSEATSGEFKVLSIKLPPQASGDMQMMP"
     gene            902..>2231
                     /locus_tag="VKJ77_24225"
     CDS             902..>2231
                     /locus_tag="VKJ77_24225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007747473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF308 domain-containing protein"
                     /protein_id="HMC48447.1"
                     /translation="MVRLVMILLGVGYLRTRWKALMVAGWLSAALGIEVFIDMMDGSL
                     YFPLKPFAFVLLLEGLSTLAVAWTGMGGQRKLRYVKGSAFTLAAALILIGTLHANFIL
                     AMIFGTLFFADGVLQIISARIVRFRRWRLAIAGGVFEMVVAFIFYLPYPVPYAGTIPY
                     CVSLGLLFGGWNMILLAMRVRRMEHNPAVADSVPTPAAAPETELASSSATEWDGPPSD
                     DERALTIHVWMPAATAKAEATPRVIVNRYIAAVDRNGAISTGHAALESPEGIYISLYP
                     GTEIDRSPEEFGRMLRGTRENDIPGVFQPDYRTEANAWCESTVKVRIRNYDPERLQRF
                     WDAYRQDATYNLTYRNCSSTVARALEAAIEGASARVWEKSGSWKPLVRVMTAPELWVA
                     AQVRKRAATMAWTPGLTLDYARALSMLADPRPLGWVKMARLALRTMYRSRR"
BASE COUNT          431 a          685 c          679 g          436 t
ORIGIN      
        1 tgtcgcgtta ttaactgtgg ctattcaaca aaccagcaaa gagcaatttg gggcgttcac
       61 atgcgttgct gagcggccca cgcaccagcg ttccccggag agatgcaagt tttattcacc
      121 gctgcgcact caggtgttgt cccggttacg aagcgccagt ttgtggtgtg acaatcgatc
      181 agtgactcag catcccatgg gtgccgttgc gctgcccatc aatcgccggc tcaaccaaaa
      241 tggaacagaa catgcatcgc cacatctatc ttgcggctat tcccgctgcc tttgttgccg
      301 gcctgtttgt gtctcacctg agcacgccgg cacaagctca gacgccagat agcaagctca
      361 cggcgcaaat catagacctg atggcaataa ccgatgctga tcttggcgca caggttccga
      421 acatgggaac cttgcgttca aagggcctgg cagtgacatc gaacggaacc gtagcggtgc
      481 agacgggcaa cgtgccaaaa catactcata tgggctctga cgaaatccag tatgtgatct
      541 caggaagcgg cactttctgg ctgggaaacg agcagcaccc gattcacgcc ggtgacctga
      601 tcattgtccc aaaggggacg gcgcatgccg ggtccgaggc gaccagtggg gagttcaagg
      661 ttctctcgat caaattgcca ccccaagctt ccggcgacat gcaaatgatg ccctgagacc
      721 ggggcagagg tcggcgcacc tcacggcgag tgtccaccgc gggtatatag gccactaaat
      781 acctggtcac gcaaaattgc cttcttgaag catgccatcg tgaaacgccg cgcttggaat
      841 cgcactgcta tatattgaga caatctgcgc cgctcggtgc caccgcccaa ggaggtcctt
      901 catggtccga ctggtcatga tccttctcgg cgtcggctat ctgcgcacgc gctggaaggc
      961 gctgatggtg gcgggatggc tcagcgccgc gctgggtatc gaagtgttca tcgacatgat
     1021 ggacggctcg ctctactttc cgctcaagcc gttcgctttc gtgctgctgc tggaaggcct
     1081 ctcgacgctg gccgtcgcgt ggactggcat gggcggccag cgcaagctgc gctacgtgaa
     1141 ggggtcagcc ttcacgctgg cagccgcatt gatcctgatc ggcacgctac acgccaactt
     1201 tatcctcgcg atgatcttcg gcacgctttt cttcgccgac ggtgtcctgc agatcatttc
     1261 cgccagaata gtgcgcttcc ggcgctggcg tctcgccatc gcgggcggcg ttttcgaaat
     1321 ggtggtggca ttcatcttct acttgcccta tcccgtgccg tacgcgggga cgattccata
     1381 ctgcgtgtcg ctcggcctgc tgttcggcgg ctggaacatg atcctgctcg ccatgcgcgt
     1441 gcgccggatg gagcacaacc ccgcagtggc ggattccgtg ccgacgcctg ccgctgcacc
     1501 cgaaacggaa ctggccagtt cgagcgcaac ggaatgggac ggcccgccat cggacgacga
     1561 acgcgccctc accattcacg tctggatgcc ggccgccacc gccaaggcag aggcgacgcc
     1621 acgtgtgatc gtgaaccgct atatcgcggc cgtcgaccgg aacggcgcga tatccaccgg
     1681 ccacgcggcg ctggagtcgc ctgaaggtat ctatatcagc ctgtatccgg gcacggaaat
     1741 cgatcgttcg cctgaggaat tcgggcgcat gctgcgcggg acgcgggaga acgacattcc
     1801 gggtgtcttc cagcccgact accggaccga ggcgaatgcg tggtgcgagt cgaccgtcaa
     1861 ggtgcgtatc cgcaactacg atccggagcg cttgcaacgg ttttgggacg cgtacaggca
     1921 ggacgcgacc tataacctga cctatcgcaa ttgctcgagc acagtggcgc gcgcgctcga
     1981 agcggcgatc gaaggtgcgt cggcgcgggt gtgggaaaag tccggcagct ggaaaccgct
     2041 ggtgcgggtg atgacggcgc ccgaattgtg ggtcgccgct caggtgcgca aacgcgccgc
     2101 aacgatggcc tggacgcccg gcctgaccct cgactacgcc cgcgcgctca gcatgctcgc
     2161 cgatccgagg ccgctcggct gggtcaagat ggcgcggctc gcgctcagaa cgatgtatcg
     2221 ctcacgtcgc c
//
LOCUS       DATGBK010001722         2344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_344491, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001722 DATGBK010000000
VERSION     DATGBK010001722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344491"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..732)
                     /gene="xdhC"
                     /locus_tag="VKJ77_24230"
     CDS             complement(151..732)
                     /gene="xdhC"
                     /locus_tag="VKJ77_24230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase accessory protein XdhC"
                     /protein_id="HMC48448.1"
                     /translation="MEMLQESVVIGRRSGLSTPLAAPPTHIVLFGAGHVGHALIKLLG
                     MLPCVVQWVDARDELFPDEVPSNVQIEATDTPDVIVDSAPAGACFLVMTHDHSLDFSL
                     AIRIMRRNDFAYFGMIGSKTKRVKFERRLVDRGVDPGRLTEMTCPIGVEGIVDKAPAS
                     IAVAVYAQLMQVRALSQYGARLCLGREDERFYR"
     gene            complement(746..>2344)
                     /gene="xdhB"
                     /locus_tag="VKJ77_24235"
     CDS             complement(746..>2344)
                     /gene="xdhB"
                     /locus_tag="VKJ77_24235"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004854 - xanthine dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase molybdopterin binding
                     subunit"
                     /protein_id="HMC48449.1"
                     /translation="CCAALAAWKLLCPVKLRPDRDDDMMITGKRHDFHYTYEVGYDDT
                     GLIDGVSVDMTSRCGFSADLSGPVMTRALCHFDNAYWLPHVSIDGFCGKTNTQSNTAF
                     RGFGGPQGAFAIEYIVDNIARSVGRDSLDVRRRNLYGKTEHNVTPYGQAVEDNVIHEL
                     LDELEATSNYRARREAVREFNANNDVLKKGLALTPVKFGIAFNVTHFNQAGALVHIYT
                     DGSVLVNHGGTEMGQGLNTKVAQVVAHELGIRFNRVRVTATDTSKVANTSATAASTGS
                     DLNGKAAQDAARQLRERLAALAAEHYGGDQVDARDVRFVDDRIVVGDKAIPFDEVIMQ
                     AYRARVQLWSDGFYKTPKLYWDQAKMQGRPFSYYSYGAAVSEVVIDTLTGEMRVLRAD
                     ALHDVGASLNPALDVGQVEGGFIQGMGWLTTEELWWNAGGKLMTHAPSTYKIPTVNDC
                     PPVFDVRLFKNRNAEDSIHRSKAVGEPPLLLPFSVFFAIRDAVASVGNNTVNPPLNAP
                     ATSEEILKAVGAVRAAVAAAAAAR"
BASE COUNT          486 a          754 c          641 g          463 t
ORIGIN      
        1 gagtcacgga cggcgcgctt gcgcgttacg acgccgtagc gcccattcct gaagctgcgg
       61 acttcacacg ttgtgttcag gataggtacg ctttcccagc cgctgggtca ccctgaatga
      121 aggacggcca gcccgttcac aggtcttgct tcatcgataa aaccgctcgt cttcacgccc
      181 caggcatagt cgagcgccat actgcgacaa agccctaacc tgcatcaact gcgcataaac
      241 cgcgacagca atagaagcag gcgctttatc cacgatcccc tccacgccga ttggacaggt
      301 catttccgtc aatcgcccgg gatccacacc tcgatcaacc aatcgccgct cgaatttcac
      361 acgtttcgtc ttcgacccga tcatgccgaa gtaagcgaaa tcgttgcgtc gcatgatccg
      421 gatcgctagt gaaaaatcca gcgaatggtc atgcgtcatc accagaaaac aagcacccgc
      481 cggcgccgaa tcgacaatca catccggcgt atcggtcgct tcgatctgca cattgctggg
      541 cacttcatcg ggaaaaagtt cgtcgcgtgc atcaacccat tgaacgacgc aaggcagcat
      601 gcccagcaac ttaataagcg catgcccgac gtgccccgcg ccaaacagga cgatatgcgt
      661 cggcggtgca gccaacggcg tcgacaaccc gctacgacgg ccgataacga cagattcctg
      721 aagcatttcc atagcaagcc tcgaatcaac gagctgccgc agccgcagcc actgcagcgc
      781 gaacggcgcc cactgctttc aagatttctt cgctggtcgc gggcgcattc agcggcggat
      841 ttacggtgtt attacctaca ctcgccactg catcgcggat cgcgaagaac accgaaaacg
      901 gcagcagcaa gggcggttcg ccgacagcct tcgaccggtg gatgctgtcc tcggcgttgc
      961 ggttcttgaa caaccggaca tcgaacacag gcgggcaatc attgaccgtc gggatcttgt
     1021 acgtcgatgg cgcatgggtc atcagcttgc cgcccgcgtt ccaccacaat tcctccgtcg
     1081 tcagccagcc cattccctgg atgaaaccgc cttcgacctg ccccacatcc aaagccggat
     1141 tgagcgacgc gcctacgtcg tgcaatgcgt cagcgcgcag cacgcgcatt tcgccggtca
     1201 gcgtgtcgat cacgacttcg gaaaccgccg cgccgtagga gtagtaggaa aacggccgac
     1261 cctgcatctt cgcctggtcc cagtaaagct tcggcgtctt gtagaaacca tcggaccata
     1321 actgcacccg cgcgcgatac gcctgcatga tcacttcgtc gaaaggaatc gccttgtcgc
     1381 cgactacaat ccgatcgtcg acgaaccgca catcgcgcgc atcgacttgg tccccgccat
     1441 agtgctcggc ggctagcgcg gcaagccgtt cgcgcaattg acgggctgcg tcctgcgcgg
     1501 ctttgccgtt cagatcgctg ccggtcgacg ccgcggtcgc cgatgtgttc gcgactttgc
     1561 tcgtgtcggt cgctgtgacg cgaacacggt tgaaccggat gccgagctcg tgcgcgacta
     1621 cctgcgcgac cttcgtattg agcccctggc ccatctctgt gccgccgtga ttcacgagta
     1681 ctgaaccgtc ggtataaatg tgcaccagtg cgccggcctg gttaaagtga gtgacgttga
     1741 acgcgatgcc gaacttcacc ggcgtcaacg cgaggccctt tttcagcaca tcgttgttcg
     1801 cgttgaattc gcgcactgcc tcgcgacgag cgcggtaatt gctggtggct tcgagctcgt
     1861 cgagcagttc gtgaatcacg ttgtcttcca ccgcctgccc atacggtgtc acgttgtgct
     1921 cggtcttgcc gtacagattc cggcggcgta catcgagtga atcgcgcccc accgaacgcg
     1981 cgatgttgtc gacaatgtat tcaatcgcga acgcaccctg cggtccgcca aagccgcgaa
     2041 acgccgtgtt cgactgcgtg ttggtcttgc cgcagaaccc gtcgatcgat acgtgcggca
     2101 accagtacgc attgtcgaaa tggcacaacg cgcgtgtcat cacgggacct gaaaggtcgg
     2161 ccgaaaaacc gcaacgcgac gtcatgtcga cagacacgcc gtcgatcagg ccggtgtcgt
     2221 catagccgac ttcgtacgtg tagtgaaaat cgtgccgctt gccggtgatc atcatgtcgt
     2281 cgtcgcggtc cggacgcagt ttcacggggc acagcagctt ccatgcggca agtgctgcgc
     2341 agca
//
LOCUS       DATGBK010001723         1693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_20143, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001723 DATGBK010000000
VERSION     DATGBK010001723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20143"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /locus_tag="VKJ77_24240"
     CDS             <1..782
                     /locus_tag="VKJ77_24240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014905716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC48450.1"
                     /translation="MSRIQFTPDLLPSDITGAETLLQSGTERTLTFQPGPIFGNLILA
                     DEINRAPAKVQSALLEAMEERQISVAGKTHKMPDLFLVMATQNPIEQEGTYPLPEAQM
                     DRFLFKVLITYPSPESEREMLRLLRRESNDAPQVTDALSQDVIFAVRQAVRQITVAPA
                     IDEYIVSLVNATRHGGELDADLGKWIEIGASPRGAIGLDRASRVQAWLQDRSFVTPDD
                     VRAVIHPVLRHRLILSYDANADNISADRVIDRLIEKVAVPA"
     gene            830..>1693
                     /locus_tag="VKJ77_24245"
     CDS             830..>1693
                     /locus_tag="VKJ77_24245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HMC48451.1"
                     /translation="MAVAPEAAIGRVYVDPAHLAKLEFRARGLSFVAPAPLSSILSGN
                     HASRLRGRGLNFEEIRSYLPGDDIRHIDWKVSLRLGKPQIRAYTEERDRPLLVVVDQR
                     MSMFFGSSRAFKSVVAAEAAALAVWMGFAAGDRVGGVIFDDEHVVRVRPLRSRSRIKV
                     LFGALAGMNTALHAESASRTNYGQLDTALQGVLQLAGHDYLICIVSDFAGASERTRKL
                     LRQLSKHNDVIAAMVFDPLWQRMPEHRALVVSEGRLQVELRIEQEKVRAPLASMFKGR
                     TAEVADLLRSSG"
BASE COUNT          322 a          501 c          540 g          330 t
ORIGIN      
        1 ccatgagccg aatccaattc acgcccgacc tgctgccttc cgacatcacg ggtgcggaaa
       61 cgctgctcca atcgggaacg gaacgaacgc tgacatttca gccgggcccc attttcggca
      121 acctgattct cgcggacgag attaatcgcg cgcccgccaa ggttcagtcc gcgttgctcg
      181 aagccatgga agagcgccag atttccgtcg ccggaaaaac gcacaagatg ccggacttgt
      241 tcctggtgat ggccacgcaa aatccgattg aacaggaagg gacctatcca ttgcccgaag
      301 cgcaaatgga ccggtttctt ttcaaggtcc tgattactta cccatcgccg gaaagcgagc
      361 gcgagatgtt gcgactgctc agacgtgaaa gtaacgacgc gcctcaggtc accgatgccc
      421 tgtctcagga tgtcattttc gcggtacgcc aggctgtgcg gcagatcacg gtggcccctg
      481 ctatcgacga atacattgtc tcgctggtca atgcgacgcg gcacggcggc gaactcgacg
      541 cggacctcgg caagtggatc gagattggtg cgagtccgcg cggcgcgatt gggcttgacc
      601 gtgcaagccg cgtgcaggcg tggcttcagg accgtagttt cgtgacaccc gacgacgtgc
      661 gggccgttat tcatcccgtg ctgcggcatc ggctgatact ttcgtacgat gccaacgcgg
      721 acaacatcag tgcggaccgt gtgatcgacc gcctgatcga gaaagttgct gtgccggcat
      781 agcgggcgag tcgcgcccaa gcttgcgcgc atacgaaaga ggacgatcca tggccgtggc
      841 acccgaagct gctattggcc gcgtatatgt cgacccggcg catctcgcga agctcgaatt
      901 tcgcgcgcgc ggactgagct tcgtggcgcc cgcgccgtta tccagcatct tgtcgggcaa
      961 tcatgcgtcg cggttgcgcg gccgtggcct taacttcgaa gagattcgca gctaccttcc
     1021 cggcgatgat attcgtcaca tcgactggaa ggtttcgctg cgcctcggca agccgcagat
     1081 tcgcgcctac accgaagagc gggaccggcc gctgcttgtg gttgtcgatc agcgcatgag
     1141 catgttcttt gggtcgagcc gcgcgttcaa gtcggtggtg gcggcggagg ctgcggcgct
     1201 cgcggtatgg atgggattcg ccgcgggcga tcgtgtgggc ggcgtgatct tcgatgacga
     1261 gcacgtcgtc cgcgtaaggc cattgcgcag ccgcagccgg atcaaggtgc tgttcggcgc
     1321 actcgcgggg atgaacaccg cgttgcatgc cgagagcgcg tccagaacga actacggtca
     1381 gctcgatacc gcgcttcaag gcgtgctgca gcttgcagga cacgactacc ttatctgtat
     1441 cgtgagcgat tttgccggcg cgagcgaacg gactcgcaag ctgttgcgcc agctgtcgaa
     1501 acacaatgac gtcatcgcgg caatggtctt cgatcccctc tggcagcgca tgcccgagca
     1561 ccgtgcgctg gtggtcagcg agggacgtct tcaggtggaa ctgcgcatcg agcaggagaa
     1621 ggttcgcgcg ccgctcgcga gcatgttcaa agggcgcacc gcagaggtgg ccgacttgct
     1681 gcgatcgagt ggt
//
LOCUS       DATGBK010001724         2946 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_44074, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001724 DATGBK010000000
VERSION     DATGBK010001724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44074"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VKJ77_24250"
     CDS             complement(<1..185)
                     /locus_tag="VKJ77_24250"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0006555 - methionine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HMC48452.1"
                     /translation="MKPIELSFEFFPPKTQEGIEKLRATGAQLKALNPKFVSVTFGAG
                     GSTQQGTLDTVVEMMKQG"
     gene            complement(234..584)
                     /locus_tag="VKJ77_24255"
     CDS             complement(234..584)
                     /locus_tag="VKJ77_24255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HMC48453.1"
                     /translation="MSVLLTWLINALALLIITYLVPSIHIRSFGTALIVAIVLGLINT
                     FLRPLLVLLTLPVTILTLGLFILVVNALCFWLCASLLKGFEVSGFWSAFFGSILYSIV
                     SWLLSALILGQRNF"
     gene            complement(673..2094)
                     /gene="ahcY"
                     /locus_tag="VKJ77_24260"
     CDS             complement(673..2094)
                     /gene="ahcY"
                     /locus_tag="VKJ77_24260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HMC48454.1"
                     /translation="MNAAVLDSNTNKDFVVADMSLAAWGRKELNIAETEMPGLMQTRE
                     EYKVSQPLKGARIAGSLHMTIQTGVLIETLTALGADVRWASCNIFSTQDHAASAIAQG
                     GVPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEKDRSVI
                     AKPENEEEVALYKSIAAHLDIDPTWYSKRLVHIQGVTEETTTGVHRLYQMEKEGRLPF
                     PAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLR
                     GLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNFHVIGHDHMKAMR
                     NNAIVCNIGHFDSEIDVASTRQYEWDNIKPQVDHIIFPDGKRIILLAEGRLVNLGCAT
                     GHPSFVMSASFTNQTIAQIELFVHGDKYENKVYVLPKHLDEKVARLHLGRIGAELTVL
                     SDYQASYISVDKMGPFKPNHYRY"
     regulatory      complement(2128..2261)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01057"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="S-adenosyl-L-homocysteine riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="S-adenosyl-L-homocysteine"
                     /db_xref="RFAM:RF01057"
     gene            2381..>2946
                     /locus_tag="VKJ77_24265"
     CDS             2381..>2946
                     /locus_tag="VKJ77_24265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48455.1"
                     /translation="MELRSLRYFVEVVKQKSFTGAAEKMFVTQPTISKMVKSLEDEIG
                     SPLLLRESRQMTLTDAGQIVYQRGLEVLAAHAQLEAELNDLGKLGRGTLTIGIPPMGG
                     SLFTPAIATFKKRYPKVELKLFERGSKAIEAALIDGEMELGGVLQPVDLATFDVLPIS
                     RQLLWLVAPKGSRWDAVVDVALADLAPEP"
BASE COUNT          620 a          849 c          869 g          608 t
ORIGIN      
        1 ccctgcttca tcatctcgac gacggtatcg agcgtgcctt gctgcgtgga accgcccgcg
       61 ccgaacgtca cggagacgaa cttcgggttg agcgccttga gctgcgcgcc agtcgcgcgc
      121 aatttctcga ttccttcctg cgttttcggc gggaaaaact cgaatgagag ttcgatcggt
      181 ttcatgggag aaagttgaac gcggttgaac gcgcgcgcag gacgcgcgtg ttcttagaag
      241 ttgcgctgac cgaggatcag cgccgacagc agccaggaca cgatgctgta caaaatcgag
      301 ccgaagaatg ccgaccagaa acccgacacc tcgaagccct tcagcaacga agcgcacagc
      361 cagaaacaca gcgcgttcac gacgaggatg aacaacccga gcgtgagaat ggtcaccggc
      421 agcgtaagca gcaccagcaa cggacgcagg aacgtattga tcagcccgag cacgatcgcg
      481 acgatcagcg cggtgccgaa actccgaatg tgaatcgacg gcacaaggta ggtgatgatc
      541 aacagcgcga gcgcgttgat cagccaggtc agcagcacgg acatcgaagg tctcctggta
      601 cttgttggga cgtgtgcccg gatgttgtta cacccgggca cacgagaaag agctacgaca
      661 acacagccgc gatcaataac ggtagtgatt cggcttgaac ggacccatct tgtccacgct
      721 gatgtagcta gcctgatagt cggaaagaac ggtcagttca gcgccaatac ggcccagatg
      781 caggcgcgca accttttcat caaggtgctt gggcaaaacg tagaccttgt tttcgtactt
      841 gtcgccgtgc acgaacaatt cgatctgcgc gatcgtctgg ttggtaaacg atgccgacat
      901 cacgaacgac gggtggcccg tcgcgcaacc caggttcacc aggcggcctt cagccagcag
      961 gatgatgcgc ttgccgtcag ggaaaatgat gtggtcgact tgcggcttga tgttgtccca
     1021 ctcgtactgg cgcgtcgatg caacgtcgat ttccgagtcg aagtgaccga tattgcagac
     1081 gattgcgttg ttgcgcatcg ctttcatgtg gtcatggccg atcacatgga aattgcccgt
     1141 agcggtcacg aaaatgtcgg ccttgtctgc cgcatattcc atggtcacta cgcggtagcc
     1201 ttccatggct gcctgcagcg cgcagatcgg gtcgatttcc gtgacccaca ccgtcgcgcc
     1261 cagaccgcgc agcgattgcg cgcaaccctt acctacatcg ccgtaaccgg caacaaccgc
     1321 gatcttgccg gcgatcatca cgtcggtagc gcgcttgatg ccgtcgacca gcgattcacg
     1381 gcagccgtac aggttgtcga acttcgactt cgtgaccgag tcgttcacgt tgatggccgg
     1441 gaacggcagg cgcccttcct tttccatctg atacaggcga tgcacgcccg tcgtggtttc
     1501 ttccgtcacg ccctggatat gcacgaggcg cttggaatac caggtcgggt cgatgtcgag
     1561 gtgagcggcg atcgacttgt acagcgcgac ttcttcttcg ttttccggct tggcaatgac
     1621 cgagcggtcc ttttctgcct tcgagccgag gatcagcagc aacgtggcgt cgccgccgtc
     1681 gtcgaggatc atgttggcga attcgccgtt cggccattcg aagatgcggt gggagaattc
     1741 ccagtattcg tcgagcgatt cgcccttgaa tgcgaacacc ggcacaccgc cttgcgcgat
     1801 tgccgaggca gcgtgatcct gcgtcgagaa aatgttgcac gatgcccagc ggacgtccgc
     1861 gccaagtgct gtcagcgttt cgatcagcac gccggtctgg atggtcatgt gcagcgaacc
     1921 cgcgatacgc gcgcccttca gcggctgcga taccttgtat tcctcacgcg tttgcatgag
     1981 gccgggcatt tccgtttcag cgatgttcag ttccttgcgg ccccaggcag caagagacat
     2041 atcggcgacg acgaaatctt tgttggtgtt tgaatcgaga actgcggcgt tcatcacgcc
     2101 ctcctttcta aatggaaata tagaaatttg acgtgagcgc cgttcgatgc ggtggttcaa
     2161 caagcgctta ctggtctgaa agcgctggtc actccgtccg attgaatgct tcgagcctgg
     2221 cggccttcat gttgaaaacc gtcgcaacgc tcctcgaagc gagttgggat tgtagcaaat
     2281 tgggatggcg ggggcgcgtt tgagcgtgcg ctttgtttta cccgcgccct aatgacttaa
     2341 acttatcaaa tgcattccaa tctggaattc aaggaactgt atggaattgc gatcgttgcg
     2401 atatttcgtc gaggtcgtga agcaaaaaag cttcaccggc gcggcggaga aaatgttcgt
     2461 cacgcagccc accatcagca agatggtgaa gtcgctcgag gacgaaatag gttcgccact
     2521 gctgctgcgc gagagccgcc agatgacgct caccgacgcc ggccagatcg tctatcagcg
     2581 cgggctggaa gtgctcgcgg cgcacgcgca gctcgaagcc gaactcaacg atctcggcaa
     2641 actcgggcgc ggcacgctga ctatcggcat tccgccgatg ggcggatcgc tgttcacccc
     2701 ggccatcgcc acattcaaga agcgctatcc gaaggtggaa ctgaagctgt tcgagcgtgg
     2761 ctcgaaggcg atcgaggcgg cgctgatcga cggcgaaatg gaactcggcg gcgtgcttca
     2821 acccgtcgat ctcgccacgt tcgacgtact gccgatcagc cgccaactac tctggctcgt
     2881 cgcgcctaaa ggctcgcgct gggacgctgt ggtggacgtg gcgcttgccg atctcgcgcc
     2941 ggaacc
//
LOCUS       DATGBK010001725         1907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_344530, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001725 DATGBK010000000
VERSION     DATGBK010001725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344530"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..463
                     /locus_tag="VKJ77_24270"
     CDS             62..463
                     /locus_tag="VKJ77_24270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC48456.1"
                     /translation="MNLHKEAKLNHLSFPTTNVAETAAFFEKYLGCEIVAAGGSCLLK
                     RDGFDIVLDHVTEEVPVWPKNFHFGLELASLDDVHTLYKEFLDGGVRMETEVFNNSRG
                     SRFFCRSPGGVLIEVNTRADMQKQDQWQKLF"
     gene            complement(563..952)
                     /locus_tag="VKJ77_24275"
     CDS             complement(563..952)
                     /locus_tag="VKJ77_24275"
                     /inference="COORDINATES: protein motif:HMM:NF028057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HMC48457.1"
                     /translation="MKRMLSLSAFLFFSSASAIASDWVQVFANPAEAISVDSDSITRS
                     GDIVNAWTQTVLAVETDVQLGRPAKAFKTQYVADCQGRTLLVSALTFYDAQGNILASL
                     PPQQDAPTVVVPGTGGEYILRAVCNKS"
     gene            complement(1059..>1907)
                     /locus_tag="VKJ77_24280"
     CDS             complement(1059..>1907)
                     /locus_tag="VKJ77_24280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
                     /protein_id="HMC48458.1"
                     /translation="LGLEAKTIASAFLMSPAAMSKRLVRAKTKIREAGIPFSVPEREE
                     LPGRLAAVLEAVYAAYAEGWTDPVGGDTVRRDLAGEALYLAQLLVELLPGEPETLGLL
                     ALMLYAQARRDARRDAAGDYVPLSAQDPQTWNTPMIDAANALLRRASACNAIGRFQLE
                     AALQSAHVHRCRTHRPNWDEIVQLYDALFAIAASPVVAVNRALALAERDGPQAALDAL
                     APYADDPQLSDYQPYWAARANLLARAGATAEALDAYDLAIGLERDPAVRRFLQRKRME
                     LSSASS"
BASE COUNT          370 a          603 c          564 g          370 t
ORIGIN      
        1 tagggtcggg tcggtgatca cttgctccac ggcacatttc aacctctctg cgagatcgac
       61 catgaatctt cataaagaag caaaactgaa tcacctgagc tttcccacta ccaacgtagc
      121 cgagaccgct gcatttttcg agaaatacct cggctgcgag atcgtcgccg ctggagggag
      181 ttgcctactc aaacgggatg ggtttgacat cgttctggat cacgtcacgg aggaggtgcc
      241 ggtttggccc aagaacttcc acttcggcct ggagctcgcc agcctggatg acgtccatac
      301 cctctataag gaattcctgg acggtggcgt tcgcatggaa acggaggtct ttaacaactc
      361 gcgtggatcg cggttctttt gccgctcgcc tggtggcgtt ctgatcgagg tcaacactcg
      421 cgcggatatg caaaaacagg atcaatggca aaagctgttt tgaagagatg tcaacgattc
      481 gaccggtcgt gtccaacgtc tcaagttgcc ggcttcttcc tgctgcagcc gagactcgaa
      541 caggccgacc acacatcaat cctcaactct tattgcacac cgcacgcaat atatattctc
      601 cgcccgtacc cggaacgaca accgttggag cgtcttgctg cggtggcaaa gaagcgagga
      661 tattaccttg cgcatcgtaa aacgttagtg cgctcacgag gagcgttcta ccctgacagt
      721 ccgcaacgta ttgcgtcttg aacgccttgg cgggacgtcc gagctgcacg tccgtctcta
      781 ccgccaagac ggtctgagtc caggcattga cgatgtctcc gctgcgggta atagagtctg
      841 aatcaacgct tattgcctcc gccggattcg cgaagacctg gacccaatca gatgcaatcg
      901 ccgaggccga cgagaaaaac agaaatgcgc tgagcgagag cattcttttc atgtttggtc
      961 ttcataattt cgagtaaagg gagaatcagt ctgcgctcgc ctccggcggg cgcggcccga
     1021 cccgcttcgg ccgcttgtgc taaacgcaag gcgcctttct aactgctcgc cgatgagagc
     1081 tccatgcgct tgcgctgcag gaaccggcgc acggccggat cgcgctcgag gccgatcgcg
     1141 agatcgtacg cgtcgagcgc ttcagccgtc gcgccggcac gcgcgagcag attggcgcgc
     1201 gcggcccagt acggctggta gtcggacagt tgcggatcgt ccgcatacgg cgcgagcgcg
     1261 tcgagcgccg cctgcgggcc atcccgttcc gctaacgcga gcgcgcggtt cacggcgact
     1321 accggcgacg ctgcaattgc gaacagcgca tcgtagagct gcacgatctc gtcccagttc
     1381 gggcgatgcg tccggcagcg gtgcacatgc gccgactgca gcgccgcctc gagctgaaag
     1441 cgtccgatgg cattgcatgc gctcgcgcgg cgcagcagtg cgttagctgc gtcgatcatc
     1501 ggcgtgttcc atgtctgcgg atcctgagcc gagagtggca cgtagtcgcc ggccgcatcg
     1561 cgtcgggcat cgcgccgcgc ctgcgcatac agcatcagcg cgagcagccc cagcgtctct
     1621 ggctccccgg gcaacagctc gacgagcagt tgcgcaaggt acagcgcctc gccggcgaga
     1681 tcgcgccgca cggtatcgcc gccgaccggg tcggtccacc cttccgcata cgccgcatag
     1741 accgcttcca gcaccgcagc gagccgcccg ggcaactcct cgcgctcggg cacgctgaat
     1801 ggaatgcccg cttcgcggat cttggtcttc gcccgcacga ggcgcttgct catcgcggcg
     1861 ggcgacatca ggaatgcgga cgcaatcgtc ttcgcttcga gccccag
//
LOCUS       DATGBK010001726         1877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_251782, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001726 DATGBK010000000
VERSION     DATGBK010001726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251782"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..562
                     /locus_tag="VKJ77_24285"
     CDS             <1..562
                     /locus_tag="VKJ77_24285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011490312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator
                     substrate-binding protein"
                     /protein_id="HMC48459.1"
                     /translation="ETALRHGMSGWVLERIKARDLDVGFYIGDPAIDEPRDPDRFHVV
                     QLKPYLYRVLAPAGWKERVNRPDRSEGGANGWVALARLPWIWTPPESAHNRLLTRIFD
                     AHGVQPVKVAEVDQEPSMLDLVKSGVGLTLVRDSIALAEAHAHALTIVEGVTVPTQLS
                     FIVLAERREEPSIAAALRLIEDQWAT"
     gene            681..1199
                     /locus_tag="VKJ77_24290"
     CDS             681..1199
                     /locus_tag="VKJ77_24290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class IV adenylate cyclase"
                     /protein_id="HMC48460.1"
                     /translation="MARNIEIKARAHQFDQLLARAAALASEPPMIYRQQDFFYDVPNG
                     RLKLRQFDDNTPAELIFYQRDDRDGPKVSYYSRSPVTNPEATHALLAQALNTRGIVNK
                     ERHVYNVGRTRIHLDRVDGLGDFIELEVLLGQDDDEAGGEKEAEELFAKLGVSASDLV
                     PVAYVDLLSEPA"
     gene            complement(1223..1720)
                     /locus_tag="VKJ77_24295"
     CDS             complement(1223..1720)
                     /locus_tag="VKJ77_24295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012402399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HMC48461.1"
                     /translation="MVDLDHFDLALLDVLQRFGRATHQQLGEEVPLSPSQIGRRLQRL
                     EATGVIDGYRVVLRPEKLGLGVTAFTSLKLKHHGDTVIDQFQQQIEALPEVLECHATV
                     GDADYLLRIVAPDLNALSTFVMKKLMRVPGVDSVRSNIVLTTFKRNGPLPLGHLAPNP
                     PDSVD"
BASE COUNT          394 a          555 c          576 g          352 t
ORIGIN      
        1 tgaaaccgcg ttgcggcatg gcatgtcagg ctgggtgctc gagcgcatca aggcgcgcga
       61 tctcgatgtg gggttttata tcggcgatcc ggcaatcgat gaaccccgcg atccggaccg
      121 ctttcatgtc gtgcagttga agccgtatct gtatcgcgta ctggcgccgg cgggctggaa
      181 ggagcgcgtg aaccgaccgg accgttccga aggcggagcg aatggctggg tcgcgcttgc
      241 ccggctaccc tggatctgga cgccgccgga atcggcgcat aaccgcttgc tcacacggat
      301 cttcgacgcc cacggagtcc agccggtcaa agtagcggaa gtcgaccagg agccgtcaat
      361 gctcgatctc gtcaaatcgg gcgtgggcct gacgctcgtg cgcgattcca tcgcactggc
      421 cgaagcgcat gcgcatgcgc tgactatcgt ggaaggcgtc acggtgccta cgcagctttc
      481 gttcatcgtg ctggcggagc gccgcgagga gccgagcatc gcggcggcgt tacgtctgat
      541 tgaagatcaa tgggcgacct agtcacctga acgaccgttt tgaacgtcat gaccggaagc
      601 cgatgaatct tccggtcatc aaattttgtt agtctggggg gtcgcgcatc tggcgcccac
      661 gtgaacagga aaattccaac atggcacgca atatcgaaat caaggctcgc gcgcatcagt
      721 tcgaccagct tctggcgcgc gcagcagcgc tagccagcga accgccgatg atctaccgcc
      781 agcaggattt tttctacgat gtgccaaacg gccgcctcaa actgcgtcaa ttcgatgaca
      841 acacgccggc cgaactgatt ttctatcagc gcgacgaccg cgacggcccg aaggtgtcgt
      901 attactcgcg cagcccggtc actaaccctg aagccaccca cgccctgctc gcacaggcgc
      961 tgaacacgcg cggcatcgtg aacaaggagc gccacgtgta taacgtcggg cgcacgcgga
     1021 ttcacctgga ccgcgtggac ggactgggcg atttcatcga actggaagtg ttgcttggcc
     1081 aggacgacga cgaagccggc ggggagaagg aagcagagga attgttcgcg aagcttggcg
     1141 tgtcggcgag cgacctcgtg ccggtcgcgt atgtcgatct gctgagtgag ccagcctgac
     1201 ccgccggctt aaccccgccg gcttaatcga cagaatccgg cggatttggc gcgagatgtc
     1261 ccagtggcag cggtccgttg cgcttgaatg tggtcagaac aatattggag cgcacactat
     1321 ctacgccggg aactcgcatc agttttttca tgacgaacgt ggacagcgcg tttaaatccg
     1381 gcgcgacgat tcgcaacagg taatcggcgt cgccaaccgt cgcatggcat tcgagaactt
     1441 cgggcagcgc ttcgatctgc tgctggaact ggtcgataac ggtatcgccg tgatgcttca
     1501 gcttgaggct cgtaaaagcg gtcacgccga gaccgagttt ttcggggcgc agcacaaccc
     1561 ggtatccatc gatcacgccg gtcgcctcga ggcgctgcag gcggcgaccg atctgcgatg
     1621 gcgacagcgg cacttcctca ccaagttgtt gatgcgtcgc gcggccgaag cgctgaagaa
     1681 cgtcgagcag cgcgagatcg aagtgatcaa ggtcgaccat gtggatatcc tgcgtgaaaa
     1741 gctgaaagac gcaagcttac cgcgtgatcc cccggtccct cgatcgtatg cattgcccag
     1801 gcgcaccgaa cccccatcgc tcgagcaagg agagccgaca tgatcaagaa gctttcaacc
     1861 gatgaactgc ccaaact
//
LOCUS       DATGBK010001727         2393 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_251831, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001727 DATGBK010000000
VERSION     DATGBK010001727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251831"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..111
                     /gene="tdh"
                     /locus_tag="VKJ77_24300"
     CDS             <1..111
                     /gene="tdh"
                     /locus_tag="VKJ77_24300"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403454.1"
                     /note="converts threonine and NAD to
                     1,2-amino-3-oxobutanoate and NADH; functions in threonine
                     catabolism; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HMC48462.1"
                     /translation="DLSPILTHSFAVDDYEEAFATMLSGQSGKVILDWTV"
     gene            complement(172..>2393)
                     /locus_tag="VKJ77_24305"
     CDS             complement(172..>2393)
                     /locus_tag="VKJ77_24305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase domain-containing
                     protein"
                     /protein_id="HMC48463.1"
                     /translation="MFLRGLLDVTDNRVANVIVPPPDTVRHDPDDPYLVVAADKGTAT
                     FSDYANAIAREYGFWLDDAFASGGSVGYDHKRMAITARGAWESVKRHSREMGVDTQTT
                     DFTVVGIGDMSGDVFGNGMLLSRHIRLIAAFDHRHIFLDPDPDTAASFNERERLFALP
                     RSSWADYDATLISAGGGIFPRTAKTIPLSTQVQAALGVTAATLAPNELIRAILLADVH
                     LLYNGGVGTYVKSTRETPAQVGDRTNDAVRVNGSELRCKVLAEGGNLGVTQLGRIEYA
                     QNGGRINTDAIDNSAGVDCSDHEVNIKILLGLVVADGEMTEKQRNALLAEMTDEVGLL
                     VLKDNYAQTQALSIANRYVADMLDAEARLMRWLERAGRLKRKIEFLPSDEDITERQAA
                     RLGLTSPERAVLLAYSKMWLYDELLASDVPEDVLVAGMLPDYFPLPLQARYSEPMQRH
                     PLRREILATHLTNALINRVGSTFVHRLMEETDACPSEIVRACIMARDVFDLNEVWRNI
                     DALDNRVADEVQARMFVDVVRLLEGATLWFLRHLKVSTEDASLAVERVARCREAAQRL
                     APQLPALLPTGELEEWTERRRVLEEAGVDERLAAQAASGEIPTAVLDSAEVAANCDRS
                     LETVASVYFSIGTLLNYSWIAERAMALPATTHWDLLARAAALEELARLKRALTVSALE
                     QTRDIDTPEVIVENWRSRREAAVERYARLLAELRATSGASLSMLLVVVREIATLERA"
BASE COUNT          458 a          774 c          691 g          470 t
ORIGIN      
        1 gatctctccc ctatcctcac gcacagcttc gccgtggacg actatgagga ggcgttcgca
       61 accatgcttt caggccagag cggcaaggtg attctggact ggacggtctg agtttgttcg
      121 ctcattgacg ctgccgggcc ggagtcatgt ccatgactcc ggcccatgca actaagcacg
      181 ttccagtgtc gctatctcac ggaccacaac cagcagcatc gaaagacttg cgccacttgt
      241 tgcgcgcaat tccgccagca aacgcgcgta acgttcgact gcagcttccc ttcttgaccg
      301 ccagttttca acgatcactt caggcgtatc gatatcgcgt gtttgttcta gcgcgctgac
      361 cgtcaatgca cgcttgagcc gcgcgagctc ttccaaagca gccgcccgtg cgagcaggtc
      421 ccaatgcgtg gtggcgggca acgccatcgc gcgctcggcg atccagctgt agttcagcaa
      481 cgtgcctatg gaaaagtaaa cgctcgcgac ggtctcaaga ctacggtcgc aattggccgc
      541 tacttcggcg ctgtccagca ccgcagtcgg tatctccccg ctcgccgctt gcgccgccag
      601 tcgctcgtcg acacccgcct cctccagcac gcggcgccgt tctgtccatt cttcgagttc
      661 gccagtaggg agcaaggccg gcaactgcgg cgcaagcctt tgcgctgctt cacgacaccg
      721 cgcgacacgc tcgaccgcaa gactcgcgtc ctccgtcgat actttcaaat gacgcaggaa
      781 ccaaagcgtc gcgccctcca gcaaacgcac gacatcgacg aacatccggg cttgcacttc
      841 gtccgccacg cgattgtcga gcgcgtcgat attgcgccag acctcgttca gatcgaacac
      901 atcgcgcgcc atgatgcagg cacgcacgat ctcactcgga cacgcatcgg tttcctccat
      961 caagcgatgc acgaaggtgc tgcctacccg gttgatcaac gcgttcgtca ggtgcgtggc
     1021 gaggatttcg cgcctgagcg gatggcgctg catcggttcg ctgtagcgtg cctgcagggg
     1081 cagcgggaaa tagtcgggca gcatgcctgc gacaagcacg tcctcgggaa catcggaggc
     1141 gagcagttcg tcgtagagcc acatcttgct gtaagccagc agcaccgcgc gctcgggcga
     1201 cgtgagccca agcctggccg cctgacgctc ggtgatgtcc tcatccgacg gcaggaattc
     1261 gatcttgcgt ttcaaccggc ccgcgcgttc gagccagcgc atcagccgcg cctcggcgtc
     1321 gagcatgtcg gccacgtagc ggttcgcaat cgataacgcc tgcgtctgcg cgtagttgtc
     1381 tttcagcacg agcaggccga cttcatcggt catctcggca agcagcgcgt tgcgctgctt
     1441 ttcagtcatc tcgccgtcag ccaccacaag gcccagcaaa atcttgatgt ttacttcgtg
     1501 gtcggaacag tcgacgcctg cggagttgtc gatagcatct gtgttgatac gcccgccatt
     1561 ctgcgcgtat tcgatccggc cgagctgcgt cacgccaaga ttaccgcctt cggccaagac
     1621 cttgcagcgc agttcggaac cgttgacacg caccgcgtcg ttggtgcggt cgccgacctg
     1681 cgcaggtgtc tcgcgtgtcg acttgacgta ggtgcctaca ccgccgttgt aaagcagatg
     1741 cacgtcggcc agcaggatcg cgcggatcaa ctcgttcggt gcaagcgttg ctgcggtcac
     1801 gccgagcgca gcctggacct gcgtcgacaa cggaatcgtt ttcgccgtgc gcgggaatat
     1861 tccgcccccg gctgaaatca gcgtggcgtc gtagtctgcc cagctcgatc gcggcagcgc
     1921 gaacagccgc tcgcgttcgt tgaaactcgc ggcggtgtcg gggtccggat cgaggaagat
     1981 atggcgatga tcgaacgccg cgatcagacg gatatgacgc gagagcagca tgccgttgcc
     2041 gaatacatca cccgacatgt caccgatacc gaccacggtg aaatccgtcg tctgcgtatc
     2101 cacgcccatc tcgcgcgaat ggcgtttgac cgactcccat gcaccgcgtg cggtgatagc
     2161 catcctcttg tggtcgtagc ccaccgaacc acctgaagcg aacgcgtcgt ctagccagaa
     2221 accatattca cgagcgattg cgttcgcata gtcggagaac gtcgccgtgc ctttgtcggc
     2281 ggcgacaacg aggtaggggt catcaggatc atgacgcacg gtatccggcg gcggcacgat
     2341 aacattggcc acgcggttgt cggtcacatc gagcaaacca cgcaggaaca tct
//
LOCUS       DATGBK010001728         3348 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_298316, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001728 DATGBK010000000
VERSION     DATGBK010001728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3348
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298316"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            458..928
                     /locus_tag="VKJ77_24310"
     CDS             458..928
                     /locus_tag="VKJ77_24310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC48464.1"
                     /translation="MSNSAVKPIPEGMHTITPHLVCKGASAAIEFYKKAFNAVEQMRL
                     PTPDGTVMHAMLSIGDSTLMLAEEFPNCGHSGPLTLKGSPVTLHLYVKDVDAAFAQAV
                     AAGAKVTMPVADMFWGDRYGQIEDPFGHQWSLATHTRDLTEDQIREGMPKAMPT"
     gene            1056..1529
                     /locus_tag="VKJ77_24315"
     CDS             1056..1529
                     /locus_tag="VKJ77_24315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC48465.1"
                     /translation="MQKISPFLWFNNNAEEAAQFYTSIFNNSRILSVMRFGDAGPGPK
                     GAVMGIAFELEGREFKALNGGPVFTFTPAISLFVDCETQEEVNKLWVRLGEGGEPQQC
                     GWIKDKFGVSWQIVPVVLGKMLQNPNAEKSSRVMRAMMGMVKLDIAGLERAYRGE"
     gene            1663..3159
                     /locus_tag="VKJ77_24320"
     CDS             1663..3159
                     /locus_tag="VKJ77_24320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016346497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48466.1"
                     /translation="MSISFAPEPAVAPASASAAAARPVIRSAADVSQLVNRGAAVGSD
                     ARIVIAIALGGVFLDAYDLGALAFGVKDIAREFSLTPAATGFVASAITFGAIIGAFLG
                     GYLTDKIGRYRVFMADMFFFVVAAIACGLAPNAWVLGGARFVMGLGVGIDLPVAMAFL
                     AEFSRLNGRGNKAARIAMWCPTWYAAISVSYLLVLALYAVLPASHSGWLWRLTLGFGA
                     LPALAIIAIRSRYISESPVWAANQGDLRGAAQILKRSYGLDVEVDPAALQSAKKPVHK
                     ATWSNYGALLRGVYLRRTVLATVIAVASAFAYNAVAFGLPVIISSFLAQSMLTTILAS
                     LALNLCFAFVGGLIAVRTVPKVGAWKLTVLGYAFQLAALIGLAVVGRPAGGAQVVLAI
                     GFLAVFLFGQGFAPGSHSMTFASLSYPTSLRGVGVGFNQTLMRASSTVSLFLFPVLSA
                     ALGTKVFWIIAVAPLAGLIALLAIRWEPSGYDVDAEDFETASVTLKQA"
     gene            complement(3146..>3348)
                     /locus_tag="VKJ77_24325"
     CDS             complement(3146..>3348)
                     /locus_tag="VKJ77_24325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48467.1"
                     /translation="SMRADDPARSDKYAFLRSFFPHGHGVMQLSNPLRLEFAMRQSYR
                     RLAQPARDQANIVCRLTDIKLV"
BASE COUNT          577 a          967 c         1066 g          738 t
ORIGIN      
        1 agtttgtcga ccttccagga cggttggcgc tcggcatgca ttgtggatgc tgtgccggcg
       61 tcgtcgaagg cgaatggcta ggtgcggatt gaggaacaac gcggttgccg gagagtcgcg
      121 caggcttatc ggcatggcag cggagttcga atgaacctgc tcccgaaatc ttttaagtgg
      181 cttgtccaca ctgtgctgtc aaagaaacga ccggttcgtt gaaggacaat agccgcacaa
      241 accgggtcgt ttggcacatg ttggtcgctt gcatccgcac gcgaggccgc gcgctaccaa
      301 ccccgcctgc ctcggcaacc aactgccggt ttgaacaaaa aaagtctgcc cgacgtgtcg
      361 atttgcgggc tgatcgcacg tcgtatcgac agagggcgcg tgttcggcgc cgtctctctc
      421 gttattgggt caacccgtta catccaggag caaagcaatg tccaattcag ctgtgaaacc
      481 gatcccggaa gggatgcata cgatcacgcc tcacctggtt tgcaagggcg cgtccgccgc
      541 catcgagttc tataaaaagg cattcaacgc ggtcgagcaa atgcgtttgc cgacgcccga
      601 cggcacggtg atgcacgcca tgctgagcat cggcgattcg acgctgatgc tggctgagga
      661 attcccgaat tgtggccata gcggaccgct gacgctgaaa ggctcgcctg tcacgctgca
      721 tttgtatgtg aaagacgtgg atgccgcctt tgcgcaagcc gtcgccgccg gtgcgaaggt
      781 gacgatgcct gtcgccgata tgttctgggg cgaccgctat ggccagatcg aagatccgtt
      841 cggtcatcag tggtcgcttg caactcatac ccgcgatctg accgaggatc agatccggga
      901 aggcatgccg aaggcaatgc cgacgtaatt gccggcgagt tcagctctac aggcggcagg
      961 gcgccgcgga ttgagatgtc agtccgcggc gccgtcgcgg tcacgacgtt tgtgcgccgg
     1021 cgcgttcgct taacccgcaa acctcaggaa tttccatgca gaagatttct ccttttctat
     1081 ggttcaacaa caacgcggag gaagccgccc agttctacac gagcatcttt aataactcgc
     1141 gaatcctgtc ggtgatgcgt ttcggcgacg ctggcccggg gccgaagggc gcggtcatgg
     1201 gcattgcatt cgaactggag ggccgggagt tcaaagcgct gaacggcggc ccggtgttca
     1261 cctttacgcc agctatctcg cttttcgtcg actgcgagac tcaggaagaa gtaaataaat
     1321 tgtgggtccg gctcggcgaa ggcggcgagc cgcagcagtg cggctggatt aaagacaagt
     1381 tcggtgtgtc gtggcagatc gtgcccgtgg tgctcggaaa aatgcttcag aacccgaatg
     1441 cggagaagtc gtcgcgggtc atgcgcgcaa tgatgggcat ggtcaagctc gatatcgcgg
     1501 gactcgagcg ggcttatcgg ggcgagtgac agcagggcca aacggggcgc catgcgcgtt
     1561 ctgtcagccg tcattcgaca aataacaaaa atgaatttgg gatgacacgc gtacgccggt
     1621 aggatcgcgc gttccgcagc ctctgtcatt gcaccccgtc ccatgtcgat ttcctttgcg
     1681 cccgagcccg ccgtcgcgcc cgcatccgcg tcagccgccg ccgcgcgccc cgtcatccgc
     1741 agcgcggccg atgtctcgca gctcgtcaac cgtggcgccg cagtcggcag cgacgcgcgg
     1801 atcgtcattg ccatcgcgct cgggggcgtg ttcctcgacg cctatgatct cggcgcgctt
     1861 gcgttcggcg taaaggacat cgcccgcgaa ttttcgctga cgccggccgc gaccggtttt
     1921 gtcgcttcgg cgattacgtt cggcgcgatc atcggcgcgt tcctgggcgg gtatctgacc
     1981 gacaagatcg gccggtatcg cgttttcatg gccgacatgt tcttcttcgt ggttgccgcc
     2041 attgcgtgcg gactcgcccc caatgcctgg gtgctcggtg gggcgcgttt tgtcatggga
     2101 ttgggcgtgg gcatcgattt gccggtcgcg atggctttcc tcgcggagtt ttcgcgcctg
     2161 aacgggcgcg gcaacaaggc ggcgcgcatt gcgatgtggt gcccgacctg gtacgccgcc
     2221 atcagcgtgt cctatttgct cgtgctcgcg ttatacgccg tactgccagc cagccattcc
     2281 ggctggctgt ggcggctgac gctgggcttc ggtgcgctgc cggcgctcgc gatcatcgca
     2341 attcgtagcc gctatatcag cgagtcgccc gtctgggccg cgaaccaggg cgacttgcgt
     2401 ggcgcggcgc agattttgaa gcgctcgtat ggccttgatg tcgaggtcga tccggccgcg
     2461 ctgcagagcg ccaaaaagcc cgtgcataaa gcgacatgga gcaattacgg cgcattgctg
     2521 cgcggcgtgt atctgcgacg tacggtgctt gcgactgtca tcgcggtggc ttcggcgttt
     2581 gcgtacaacg cggtggcgtt cggactgccg gtcatcattt ccagcttcct cgcgcagtcg
     2641 atgctgacca ccatcctcgc ctcgctggcg ttgaatctct gtttcgcttt cgtcggtgga
     2701 ttgattgccg tgcgaacggt gccgaaggtc ggtgcgtgga agctgaccgt gctgggttac
     2761 gcgttccaat tggcggcgtt gatcgggctg gcggttgtcg ggcgtcccgc aggcggggcg
     2821 caggtcgtac tcgcaatcgg gttcctcgcg gttttcctct ttgggcaagg cttcgctccg
     2881 ggttcgcaca gcatgacgtt tgcatcgctc agttatccga cgtcgttgcg tggtgtcggc
     2941 gtgggtttca atcagacgct gatgcgcgcg agttcgaccg tttcgctgtt tttgtttccc
     3001 gtgctatcgg cggcgctcgg caccaaggtc ttctggatca tcgcggttgc gccgcttgcc
     3061 ggactgatcg cgctgctggc aattcggtgg gaaccgtcgg gctatgacgt cgatgccgag
     3121 gatttcgaaa cggcttccgt caccctcaaa caagcttgat gtccgtaagc cggcagacga
     3181 tgtttgcttg gtcgcgtgcg ggctgcgcca aacgccggta cgattgcctc atggcgaatt
     3241 ccaaccgcag cgggtttgat agctgcatta ctccatgtcc atgaggaaaa aatgatcgta
     3301 gaaatgcgta tttatcactg cgcgccgggt cgtctgcccg cattgaac
//
LOCUS       DATGBK010001729         1542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_20265, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001729 DATGBK010000000
VERSION     DATGBK010001729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20265"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            365..1402
                     /locus_tag="VKJ77_24330"
     CDS             365..1402
                     /locus_tag="VKJ77_24330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007827748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HMC48468.1"
                     /translation="MKALVYKGGGKKAFEDCAKPRILAPTDAIVKMTKTTICGTDLHI
                     LKGDMPTVPVGRILGHEGVGIIDEVGAGVTAFKRGDRVLISCVTSCGACESCRKLMFS
                     HCVNGGWILGYEIDGTQAEFVRIPRADTSLYPILAGEDDDALVMCSDILPTGFECGVL
                     NGRVEPGSSVAIVGAGPVGLAALLTAQFYSPASIIMIDLDEKRLKIAKSFGATHTINS
                     TDGKAAEAVLKITGNVGVDTAIEAVGVPATFELCEKLVAPGGTIANVGVHGKPVSLHL
                     ESLWDRNITITTRLVDTVSTPMLLKTVRAHKIDPKRLITHHFKLANVLEAYDTFANAA
                     TTGALKVIIEA"
BASE COUNT          323 a          456 c          450 g          313 t
ORIGIN      
        1 tttcgccgta gcatcgatgt acgttgcggt ttggtaagcg agtgagcccc gtctgttctt
       61 gcgggtgagc cttgcatgaa cgtggtacac tgaatatgta ggcatcgaaa gcagctcttc
      121 tgtccttctt tcggcgtcca caggcgcttg tcgttgcgtt ccatcgacga caaccagcgc
      181 gcgttaccgc gcagccacgc cgacaccgca tctttgtgct ctcgtcacgc tccgcgtgcg
      241 ttgcgcatcg tgccgcctcg gaactctaat tgcttctgca atacaaagag gttccaacat
      301 ggccaaccag actgttcttc cgcgccccga cgtgccctca tcagcggcag gcgccgccgt
      361 tacgatgaag gccctcgtct ataaaggcgg cggcaaaaag gcgtttgagg attgcgcaaa
      421 acccagaata ctcgcaccta cagacgctat cgtcaaaatg acgaagacga cgatctgcgg
      481 aactgatctg catattctca agggcgatat gccgaccgta ccggtaggcc ggatactcgg
      541 acacgaaggc gtcggcatca tcgacgaagt gggcgccggg gtaaccgcgt tcaagcgcgg
      601 tgaccgcgtg ctcatctcct gtgtcacgtc gtgcggcgcg tgcgaatctt gtcgaaagct
      661 catgttctcg cactgcgtga acggcggctg gattctcggc tacgaaatcg acggtacgca
      721 agcggagttc gttcggattc cgcgtgccga tacgagtctg tatccaattc ttgccggcga
      781 agatgatgat gcgctcgtta tgtgcagcga tatcttgccg accggattcg agtgcggcgt
      841 ccttaacggc cgcgttgagc cgggcagcag cgttgcgatt gtcggcgcgg ggcccgttgg
      901 tctcgccgcg ctactgaccg cgcaattcta ctcgccggcg tcgatcatca tgatcgatct
      961 cgacgaaaaa cgcctgaaga ttgcaaagag cttcggggcg acccatacca tcaatagcac
     1021 tgacggcaaa gcggccgaag cggtgctaaa gataaccggt aacgtcggcg ttgatacggc
     1081 gattgaagcg gtcggcgtac ccgcaacctt tgagttgtgc gaaaaactcg tcgcaccggg
     1141 tggaaccatc gcaaacgtcg gcgtgcacgg caagccggtc agtctgcatc tcgaaagcct
     1201 ctgggaccgt aatataacga taacgacgcg actggttgac accgtcagca cgccaatgct
     1261 cctgaaaacc gtgcgggcgc ataaaatcga tccgaagcgc ttgatcaccc atcacttcaa
     1321 gctcgcgaac gtgcttgaag cgtatgacac cttcgcgaac gcagcgacga cgggcgcgct
     1381 aaaggtgatt atcgaggcgt aacgtcaccg gcgccggatt gctcgagcag tccggcgtcg
     1441 tcacgccgca tttcttgcgg cgcgctcacg ccgcagagcg tgagcacgtg cgccaacacc
     1501 gtttgtgtgg cgattgccag cgacaatcgc gcgaccccga gt
//
LOCUS       DATGBK010001730         4455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_298342, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001730 DATGBK010000000
VERSION     DATGBK010001730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4455
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298342"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..421)
                     /locus_tag="VKJ77_24335"
     CDS             complement(<1..421)
                     /locus_tag="VKJ77_24335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48469.1"
                     /translation="MMTHRLRSLAHASVAAALVAGVLCCTVADAATLTVNVSARGNQR
                     STWQDAFDKFKKANPDVDLKVTYITEEAYKVQMGGWLATDPPDIVSWHDGERMAYYAQ
                     RGLLEDLSPDWSKNGWSQQYASVKEASTYKGKQYAAPL"
     gene            complement(531..1670)
                     /gene="ugpC"
                     /locus_tag="VKJ77_24340"
     CDS             complement(531..1670)
                     /gene="ugpC"
                     /locus_tag="VKJ77_24340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HMC48470.1"
                     /translation="MATIRLVNVQKSYGDHAPVIRRVNLDIAQHEFCVFLGPSGCGKS
                     TLLRMIAGLEDLSEGELHIGGRLVNDVPAAARGVAMVFQSYALFPHMTVFNNMAFGLK
                     LAKQPRDVIERKVREAARILQLDDYLDRFPKALSGGQRQRVAIGRAIVREPGVFLFDE
                     PLSNLDAALRGQTRVEIARLHQRFANASVVYVTHDQVEAMTLADRIVLLHAGADAERF
                     GSVAQTGAPLELYHHPKSRFVAGFIGSPRMNFIDAVVESTAAASVTVTLAQSGERLVA
                     HVDGQRLQRGQPVTLGVRPEHLRLDGDEQSIQCVTVLSEELGEHSYIHADHATGTLVA
                     KAPGDTSISPGERIRVHVPASACHLFDADGLALRRSAFEPERAVA"
     gene            1873..2895
                     /locus_tag="VKJ77_24345"
     CDS             1873..2895
                     /locus_tag="VKJ77_24345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC48471.1"
                     /translation="MVTLSEVAKRAHVTAATVSNVLRNREKVRPETADRVLKAIDDLG
                     YRPNLNARALAEGRSSTLALMLSNISNPFYPEFVLAAERAARKAGHFLMVCNTDDDAE
                     IGRAYLNQIAGTLADGVLVMNTDIAINDLCASAMHSAPILLAMWEHPETPPALPCVAV
                     DFAHAGALAAGHLLELGHREIGLLIGDGCGGLQDARSNGFRAAMREAGIEADAAAVLQ
                     IRDSIDAGYAACMQLMSNRPHLTAIFATNDLLAIGAAQALITLGRKVPDDVSVIGITD
                     IQLAHQVHPALTTVAIQTAAIAELSVDRLIQLIQAPEMQPSMVIAPAPKLVVRASTGP
                     RRAGST"
     gene            3599..>4455
                     /locus_tag="VKJ77_24350"
     CDS             3599..>4455
                     /locus_tag="VKJ77_24350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018423810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC48472.1"
                     /translation="MSDTGSTQVKRPRRWRALLLLLVVLVLIGVVVMHVLRAKKPQRA
                     TPPQVVTVATATLGSMPEILSELGTVTPTATVTVLPQLSGYLTAVGYREGQDVQKGQF
                     LAQIDPRQYEIDKQQAEATLAKDRAALAQARADLVRFTQLNERKSIAEQTFADQQFLV
                     QQDEAAVKVDLANIAQFDLDLTYCRITAPVSGRVGLRLVDPGNYVTASSSPGIVVITT
                     MKPTTVQFTVPQDSLASVLQRMHGGASLPVTAYSSDNSKEIATGTLYAVSNQMATSTG
                     TITLRATFP"
BASE COUNT          872 a         1369 c         1299 g          915 t
ORIGIN      
        1 caagcggcgc cgcgtattgc ttgcccttgt acgtggacgc ttctttcacc gacgcgtatt
       61 gctgcgacca accgttcttg ctccagtcgg gcgacaggtc ttccagcagg ccgcgttgtg
      121 cgtaatacgc catgcgctcc ccgtcgtgcc acgagacgat gtctggcgga tcggtggcga
      181 gccagccgcc catctggacc ttgtacgcct cttcggtgat ataggtcacc ttgaggtcga
      241 cgtcggggtt agctttcttg aatttgtcga acgcgtcctg ccaagtcgag cgctggttac
      301 cgcgcgccga tacgttgacc gtcagcgtgg cggcatcggc cacggtgcag cagagcacac
      361 ctgctactag cgcggccgcc actgatgcat gagccagact gcgaaggcga tgagtcatca
      421 tctttgtctc cttgactacc ttgttggctg acagcgatta actgccagac gatgtaaccc
      481 gctctgtggc ggattgggat tttgaagcta agcgtttgtg cgtttgtgct ttaagccacg
      541 gctcgttcag gctcgaacgc gctgcgccga agcgcaagtc catccgcgtc gaacagatgg
      601 catgccgaag ccggaacgtg aacgcggatg cgctcaccag gactgatgga tgtatcgcca
      661 ggcgccttcg cgacgagcgt gccggtcgcg tgatccgcgt gaatgtagct gtgctcgccg
      721 agctcctccg acagcaccgt gacgcactgg atggactgct cgtcgccatc gagccgcagg
      781 tgttcggggc gcacgccgag cgtgaccggc tggccgcgct gcagacgctg gccatcgaca
      841 tgtgccacca gccgttcgcc gctttgcgcc agcgtgaccg tcacgctggc ggcagcggtc
      901 gactcgacaa cggcatcgat gaaattcatt ctcggtgagc cgatgaaacc cgccacgaag
      961 cgcgacttcg gatggtggta cagctcaagc ggcgcgccgg tctgcgcaac gctgccgaag
     1021 cgctccgcgt ccgcgcctgc gtgcagtagc acgatcctgt cggcgagcgt catcgcctcg
     1081 acctgatcgt gggtcacata gaccacgctc gcgtttgcaa agcgctggtg cagccgggcg
     1141 atttccacac gggtctggcc gcgcagtgcg gcgtccagat tcgacagggg ttcatcgaac
     1201 aggaacacgc cgggttcacg cacgatggcc cggccgatcg caacacgctg ccgttggcca
     1261 ccggacagtg ctttaggaaa ccggtcgagg tagtcgtcta gttgcaggat gcgtgcggct
     1321 tcacgcacct tccgttcgat cacgtccctg ggctgcttcg cgagtttcag gccgaatgcc
     1381 atgttgttga acacggtcat gtgcggaaac aacgcgtagc tctggaacac catcgcgacg
     1441 ccgcgcgccg cggcaggcac atcgttcacg agacgcccgc caatgtgcag ctcgccttcg
     1501 ctcaggtctt cgagaccggc gatcattctc agcagcgtgg acttgccgca gcccgatgga
     1561 cccaggaaca cgcagaactc atgctgcgca atatccaggt tcacgcgccg gatcaccggc
     1621 gcgtggtcac cgtatgactt ctgcacgttc acaagacgaa ttgtcgccat gttatctccc
     1681 ggatttaacc gcttaaattt ttgcgtaaaa taaacggcac gtccttgcac cgcgtgtatt
     1741 taaccgctta aattcgggta ggatggaaga agtcatgatg ggtgtctccg ttgtgttttc
     1801 cagaagttat caacgtcgcc aatcgcttgc aacatttgaa tcgcattccc tgaatgtggg
     1861 ataacttaga aaatggtcac tctgtccgaa gttgcaaagc gcgcgcatgt cactgcggca
     1921 accgtgtcca acgtgctgcg caaccgcgaa aaagtccgcc cggaaacggc tgaccgcgtg
     1981 ctgaaagcca ttgatgatct cggctatcgg cccaacctca acgctcgtgc attggctgaa
     2041 ggtcgctcgt cgaccttagc cttgatgctc tccaatatct cgaacccgtt ctatcccgag
     2101 ttcgtgctgg cggccgagcg cgcggcccgc aaggcaggcc acttcctgat ggtgtgcaat
     2161 acagacgacg acgccgagat tggccgcgct tatctgaatc agatcgcggg aacgctggcg
     2221 gatggcgtac ttgtgatgaa cacggacatt gccatcaacg acctgtgcgc gtcggccatg
     2281 catagcgcgc cgattttgct tgccatgtgg gagcatcccg agacgccgcc cgccctgccc
     2341 tgcgttgccg tggactttgc gcatgcgggc gcgctggccg ccggccatct gcttgaactc
     2401 ggccaccgcg agattggtct gctgatcggc gatggctgcg gcggtttgca ggatgcccgt
     2461 tccaacgggt ttcgcgccgc catgcgcgag gccgggattg aagcagacgc cgccgcggtg
     2521 ctgcagatcc gcgattccat cgacgcaggc tatgccgcct gcatgcagtt gatgtcgaac
     2581 cggccgcacc tcaccgccat tttcgcgacc aatgatctgc tggcaattgg tgcggcgcag
     2641 gcgctgatca cgcttggccg caaggtgccg gatgacgtgt cggtgatcgg catcacggac
     2701 atccaattag cgcatcaagt acatcccgcg ttgacgacag tcgcgatcca gaccgcggcc
     2761 attgcggaat tgtctgtcga tcgacttatc cagttgattc aagcgcccga gatgcaaccg
     2821 tcgatggtca tcgctcctgc gccgaaactt gttgtgcgtg catcgacggg cccgcggcga
     2881 gcgggatcaa cctgaagcat taacgggtgg tatttgcagc gtaacgcgcg actatttagt
     2941 taggaatgca caagctattt gtaataataa ttaattcgag ctgcccgaca tcctccctgc
     3001 ttctatcaat cgtcacccca ttatctttct tttagctttc tataatctga caataaccga
     3061 tagcgcccca tatcgatgat atttgcggta ctttcttagg aaagtccatc gccgtattac
     3121 acgacgttac gcacgctcct atcgtaatgg ttcggaatgc ttcgccctat atgatcgttc
     3181 aataatcagc gtccggttcg ctacactgcg atacggtctt attcgttcgt tgctgggcgt
     3241 cactgcatcc aatccgatga acttgtgtgc actcgttcga tcacaaggga ctcaatactt
     3301 tcgatgccac accgtatccg ctgacacgcg aatgagatct gaaaagccgg acgcaacgcg
     3361 aattcagaag cacgcccacg tggtcgccgg gttttgccca agagcttcgc taacgaataa
     3421 acacgcagga atgcccggct gacccagcga gctattttgc ggaccatgac ggagcttccg
     3481 tcataccccg gctgagccgg gataacagac acgcgagaca tgcggcactt gccgggcggg
     3541 gttcttcatc gagccacccg gttatccagg gcagggtttg ttttcggagg acgtaggtat
     3601 gagcgacacc ggttccacgc aggtaaagcg ccccaggcgc tggcgtgcct tgctgctgtt
     3661 gttggtggtg ctggtgctga taggagtcgt ggtcatgcat gtgctgcgag cgaagaaacc
     3721 gcagcgcgcg accccgccgc aagtagtgac ggtcgccacc gcgacgctcg gctcaatgcc
     3781 ggaaatcctg agcgaactgg gcacagtgac ccccaccgct accgtaaccg tgctgccgca
     3841 actgagcgga tacctgacgg cggtcggcta tcgcgaaggg caagacgtgc agaaagggca
     3901 attcctcgcc cagatcgatc cgcgccagta cgaaatcgac aagcagcagg ccgaggcaac
     3961 cctcgccaag gaccgggctg cacttgcgca ggcgcgcgcc gacctcgtcc gcttcactca
     4021 gttgaacgag cgcaagtcca ttgccgagca gacctttgcc gaccagcagt tcctcgtgca
     4081 gcaggacgag gccgcggtga aggtcgacct ggccaacatt gcgcagttcg acctcgacct
     4141 gacttattgc cgcatcacag caccggtttc cgggcgcgtc ggcctgcgcc tcgtcgatcc
     4201 gggcaactac gttaccgctt cgtcgtcgcc gggtatcgtg gtcatcacca ccatgaagcc
     4261 caccaccgtg caattcacgg tgccgcaaga ctcgctcgcg agcgtgctgc agcgcatgca
     4321 cgggggtgct agcctgccgg tcaccgccta cagcagcgac aactcgaagg agatcgccac
     4381 cggcacgctg tacgctgtca gcaaccagat ggcgacgagc acggggacaa ttacccttcg
     4441 ggcgacgttc cccaa
//
LOCUS       DATGBK010001731         2420 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_344664, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001731 DATGBK010000000
VERSION     DATGBK010001731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344664"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            323..1657
                     /locus_tag="VKJ77_24355"
     CDS             323..1657
                     /locus_tag="VKJ77_24355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48473.1"
                     /translation="MRHARATRPHAALSRTFMAEAPLRIGPCFLTYVPLFSTRTDAPR
                     RIPMRCKPVARRLRNMAHVALLSVMGLSFAASVSAQDGDVIKIGVVSPQSGANSRYGA
                     YALKGAELAVKEVNATGGVLGKKLDLVQGDSQCVPAEGVSATQRMIRFDNVSMIIGDV
                     CSSVTLAMQPVVEQAGVLLLNAASSNPEITYRAGVGGYKWTFRNYPTDESRAAAALEY
                     AAKKGYTKFAVLSVDTDFGRGAITFTKKYLPRYKAQIVSEDYYKETETDFRPVLSKIK
                     YSGAQAILMYGLADTTPIVARQMHEMALGGKIELVGNAEFTNPSTIAAAPDVMNGAIE
                     TVAWLPSWSNPRSLKFVDDYKKAYGDVPNVHAYTHWESVHLLADAIKNAGSVKTADVR
                     AALGQIRYESVMGPVTFDDHQQAVVPIVLLEVVGDKAVNKGVLSSRVDYSAH"
     gene            1682..>2420
                     /locus_tag="VKJ77_24360"
     CDS             1682..>2420
                     /locus_tag="VKJ77_24360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007836493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HMC48474.1"
                     /translation="MGLFILEQIVNGIVAGSVYALIAAGMTMIFGVLRAINFAHGEYY
                     MVGTFAAWYVISKLGIDYGTAIVLSVAISAAIAALIGRLVMQRLVNAPFQSGVLATLG
                     ISLILQNAVILAFGGGYKMFPGGWLDPVEFLGIGMAQQRIVLVGAALVMFGGLEWMVR
                     STHMGKSIRAVSQNPECCQIIGIDVEKVVRRTFVLGTALAALSGALTGPINVSLYGGM
                     GESITLKTFAVIVMGGMGNVRGTLFAGW"
BASE COUNT          446 a          710 c          785 g          479 t
ORIGIN      
        1 atggggacgg tgacgttcga cgatcatcag caggccatcc tgccgatggt gcttgtcgag
       61 gacaccgacg gcaggccttc gatcaagggc gcgatgggtt cgaaagtcga ctaccccaaa
      121 caataggtcg agaacctctc ccgttgtcat gcacgaccgg tcatcgggcc ggtccgtcgt
      181 gcgatcttgc tgccttcgtt gttttctccg tgtgctccgc accgcgggcc tggattccag
      241 gtcaccgtcc aaccagctgt catccacgcg acttgactcc gcgttcgcgg gtctccccag
      301 cttcatcttc cgccgcgctg cggtgcggca tgcccgcgcc acaaggccgc acgcggccct
      361 atcacgaacc tttatggcgg aagcaccatt acgtattggt ccgtgctttt tgacctatgt
      421 acctttgttc tcaacacgaa ctgacgcccc acggagaatc cctatgagat gtaaaccggt
      481 agctcggcgg ctgcgcaata tggcgcatgt cgcgctgctg agcgtgatgg gcctgtcttt
      541 tgccgcgagc gtatccgcgc aggacggcga cgtgatcaag atcggtgtcg tgagcccgca
      601 gagcggagcg aattcccgct acggcgcgta cgcgctgaag ggtgccgagc tggcggtgaa
      661 agaggtcaac gccacgggcg gtgtgctcgg gaagaagctg gatctggtgc agggcgatag
      721 tcaatgcgtg ccggccgagg gcgtgtccgc gacgcagcgg atgattcgct tcgacaacgt
      781 gtcgatgatc atcggcgacg tgtgcagctc cgtcacgctg gcaatgcagc cggttgtcga
      841 gcaggcgggc gtgcttctgc tgaacgcggc gtcgtcgaat ccggaaatca cataccgggc
      901 cggagtgggc ggatacaagt ggacgttccg caactatccc actgacgagt cccgggccgc
      961 ggcagcgctg gaatatgcag ccaagaaagg ctatacgaag ttcgccgtgc tctcagtcga
     1021 taccgatttc ggccggggcg cgatcacgtt cacgaaaaaa tatctgccgc gctacaaggc
     1081 gcagatcgtc agcgaggact attacaagga gacggaaacg gactttcgtc cggtcctgag
     1141 caagatcaag tattccggcg cgcaggcgat cctcatgtac ggccttgccg acacgacgcc
     1201 tatcgtcgca aggcagatgc atgagatggc gcttggcggc aagatcgaac ttgttggtaa
     1261 cgccgagttc accaacccca gcacgatcgc cgccgcgccg gacgtcatga acggcgcgat
     1321 agagacggtg gcctggttgc catcgtggtc aaacccgcga agtctcaagt tcgtcgacga
     1381 ctataaaaag gcctacggcg acgtacccaa tgtgcacgcc tacacgcact gggagagcgt
     1441 gcatctgctt gccgatgcga tcaagaatgc cggcagcgtg aagacggcgg acgtgcgggc
     1501 cgcgcttggc caaatccgct acgagagcgt gatgggtcct gtcacgttcg acgatcacca
     1561 gcaggcagtc gtaccaatcg tgctgctcga ggtggtgggc gacaaggcag tgaacaaggg
     1621 cgtgctgtct tcccgtgtcg actattcggc gcactgaacc ccctttctgg agtacccggc
     1681 catgggcctt ttcatactgg aacaaatcgt caacgggatc gtcgccggtt ccgtctacgc
     1741 cctgattgca gcggggatga cgatgatctt cggcgtgctg cgagcgatca attttgcgca
     1801 cggcgagtac tacatggtcg gcaccttcgc cgcctggtat gtgatctcga agctcggcat
     1861 cgactatggc acggcgatcg tactctcggt cgccatcagc gccgcgatcg ccgcactgat
     1921 cgggcggctg gtgatgcagc gtctggtcaa cgcgccgttc cagtcgggcg tgctggctac
     1981 gctcggcatc tcgctgatcc tgcagaacgc cgtgattctc gcgttcggcg gcggctacaa
     2041 gatgtttccg ggcggttggc tcgacccggt cgagtttctc ggcatcggca tggcgcagca
     2101 acgcatcgtg ctggtcggcg cggcgctggt gatgttcggc gggctcgagt ggatggtccg
     2161 cagcacgcac atgggcaagt cgatccgggc ggtgtcgcag aaccccgagt gctgccagat
     2221 catcggtatc gacgttgaga aggtcgtgcg gcgcaccttt gtgctcggta cggcgctggc
     2281 ggcattgtcg ggcgcgttga ccgggccgat caacgtcagc ctgtacggag gcatgggcga
     2341 gtcgatcacg ttgaagacct ttgccgtgat cgtgatgggc gggatgggta atgtgcgcgg
     2401 cacgctgttc gccggctgga
//
LOCUS       DATGBK010001732         1663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_321154, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001732 DATGBK010000000
VERSION     DATGBK010001732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321154"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..678
                     /locus_tag="VKJ77_24365"
     CDS             <1..678
                     /locus_tag="VKJ77_24365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC48475.1"
                     /translation="KGQKVAVSMQDSVLNLCRVKLRDQQRLDRLGYLEEYPQYPHGEF
                     SDVVPRGGNAGGGGQPGWVLKCKGWETDPNSYIYFTIQGHAWAPICRAIGKPEWIEDA
                     NYNTASARQPHIFDIFKTIEEWLADKTKFEAVDILRKFDIPCAPVLTMKELANDPSLR
                     ESGTIAEVQHKERGSYLTVGSPIKFSDMKPEITGSPLLGEHTDEVLESLGYSSAQIAN
                     LHEKQAV"
     gene            799..1242
                     /locus_tag="VKJ77_24370"
     CDS             799..1242
                     /locus_tag="VKJ77_24370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018444155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HMC48476.1"
                     /translation="MHTTSPIDFEQLVDVIGDAVVISNASGAITLWNPAAERMFGFTP
                     DEALGNSLDLIIPERLRGRHWSGYEKTMATGETRYGHDVLRVPAVHKDGRSLSIAFTV
                     ALLHSAEADQSVTGIVAVIRDETSRFTEERNLRKRLAELEAKPGA"
     gene            1295..>1663
                     /locus_tag="VKJ77_24375"
     CDS             1295..>1663
                     /locus_tag="VKJ77_24375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC48477.1"
                     /translation="MTAQADVKRYELLIGGEAVAPGGGAYSSIIDPSTETPIASVAQG
                     TAADVDRAVQAARAALKPWNAIRASERGRILMRFAELMRTHQDEIAAVESLDAGKPIS
                     GVRRQDVPAAIDTLAYYAGWC"
BASE COUNT          384 a          483 c          513 g          283 t
ORIGIN      
        1 aaggggcaga aagtcgcggt atcgatgcag gacagcgtgc tcaacctgtg ccgcgtgaaa
       61 ctgcgtgacc agcagcgtct ggaccggctt ggttacctgg aagaatatcc gcaatacccg
      121 cacggcgaat tcagcgatgt cgttccgcgc ggcggcaatg ccggcggcgg tggacagccg
      181 ggctgggtgc tgaaatgcaa gggctgggaa accgatccca actcgtacat ctacttcacg
      241 atccagggtc atgcgtgggc gccgatttgc cgcgcgatcg gcaaacccga gtggatcgaa
      301 gacgcgaact acaacacggc ttctgcacgt cagccgcata tcttcgacat cttcaagacg
      361 atcgaagaat ggctcgccga taaaaccaag ttcgaggcgg tggacatcct gcgaaagttc
      421 gatatcccgt gcgcgcctgt gctgacgatg aaagagctgg ccaacgatcc gtcgttgcgt
      481 gagagcggta cgattgccga agtccagcac aaggaacgcg gctcgtatct cacggtgggt
      541 agcccgatca agttctcgga catgaagccg gagatcacag gatcaccgtt attgggcgaa
      601 cataccgacg aagtgctcga gagcctgggt tacagcagcg cgcagatcgc caacctgcat
      661 gagaaacaag ccgtttgaac gcgaaataag cgcgaaataa gcgcgaaact gccgcgccgt
      721 ggattgcctt gatggaccca cggcgctgcc tgaatcgcgg ccagaaagac caaggccatt
      781 tcaacaatga atagcgccat gcatacaaca tcccccatcg atttcgagca gctggtcgac
      841 gtgatcggcg acgcggttgt catctccaac gccagtggcg cgatcaccct atggaacccc
      901 gctgccgagc gcatgttcgg attcacgcct gacgaagcgc tgggcaattc gctggacctc
      961 atcattcccg agcgcttgcg agggcgtcac tggagcggct acgaaaagac catggcgacc
     1021 ggcgagacac ggtacgggca cgacgtgttg cgcgtgccgg ccgtgcacaa ggacggccgg
     1081 tccttatcga ttgcattcac ggtagcgctg ctgcattcag cagaagcgga tcaaagcgtg
     1141 actggcatcg tggccgtcat acgcgatgaa accagccgct tcaccgaaga gcgcaacttg
     1201 cgcaagcgcc tcgctgaact cgaagcaaaa cccggcgcgt gatccgaata cagggactgc
     1261 gcgcgggact gcactacggt aaaaggagac aacaatgacc gcccaagcgg acgtgaaacg
     1321 ttacgagctg ctgattggtg gcgaagcagt ggcgccgggt ggaggcgcgt attccagcat
     1381 tatcgatcca tcgacagaga cgcctatagc aagcgttgcc caaggcaccg cggcggatgt
     1441 cgaccgtgcc gtgcaggctg cgcgcgccgc gttgaaaccg tggaatgcaa tcagggcatc
     1501 cgagcgcggc cgtatcctca tgcgctttgc agaattgatg cgtacgcatc aggatgaaat
     1561 tgccgcggtg gaaagtctcg acgccggcaa gccgatctcc ggcgtgcggc gccaggatgt
     1621 accggccgcc atcgacaccc tcgcgtatta cgcgggctgg tgc
//
LOCUS       DATGBK010001733         1868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_251917, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001733 DATGBK010000000
VERSION     DATGBK010001733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251917"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            20..1234
                     /locus_tag="VKJ77_24380"
     CDS             20..1234
                     /locus_tag="VKJ77_24380"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HMC48478.1"
                     /translation="MFWEKKLTQWVQDIRDRANLPARLVLWDGQQHDFGSFAAPQVTL
                     HVKSATALPYLLEPSLDNLGEAYIKGKIDIEGKLSDIINIGYGLAKNTVTSASKLARV
                     RRYFNHTKASDKKAIQYHYDVSNEFYELWLDKNMVYSCAYFENGDEDLATAQIKKIDH
                     ILTKIQLQPGQRLLDIGCGWGALVLRAAQKFGAKCVGVTLSQNQFDLATRRVKDAGLE
                     GQIEIRLQDYRDVQGQFDRITSVGMFEHVGRKNLPGYFAKVRELLVDDGIAMNHGITS
                     TDFNSGETALGGGEFIDRYVFPDGELPHIGLALEALQEGGLEAVVVESLRRHYARTLD
                     IWAENFEAKADQAKALVDDEKFRIWRVYLAGCAYAFENDDVSIYQIVCRKAGRSAKTL
                     PWSRRYIYDKPL"
     gene            1297..>1868
                     /locus_tag="VKJ77_24385"
     CDS             1297..>1868
                     /locus_tag="VKJ77_24385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HMC48479.1"
                     /translation="MDQHALQVDLFGAVDAPETADSKPAPSSPPRTKTKSRGGVLPAL
                     AAPDHHALAHRLPDTVRIGPSTWSFPGWRDIVYGDEYSSAKLSRDGLNALGAHPLLRC
                     VSIDRSFYGPLSVADYARYANQVPAHFRFIVKAPASVTDATVRGDKGAPAGDNPAFLD
                     ACIAINDFVQPCIAGLGEKAGALVFQIPPLP"
BASE COUNT          386 a          573 c          565 g          344 t
ORIGIN      
        1 ctgaacgcgg agaacgagca tgttttggga gaaaaagctg acgcagtggg tgcaggacat
       61 tcgggaccgg gcgaacctgc ccgcccggct ggtactgtgg gatggacagc aacatgactt
      121 cggaagtttc gcggcaccgc aagttacgct gcatgtgaag agcgcgactg ccctgcccta
      181 tctgctcgag ccaagtctcg acaacctcgg tgaagcctat ataaaaggca agatcgacat
      241 cgagggcaag ctgtcggaca tcatcaatat tggctacggg ctggccaaga acacggtcac
      301 gagcgcgagc aagctggcgc gcgtgcggcg ctacttcaat catacgaagg cgtcggacaa
      361 gaaagccatt cagtaccact acgatgtgtc gaacgagttc tacgagctgt ggctcgacaa
      421 gaacatggtc tactcgtgcg catatttcga gaacggcgat gaagacctcg ccaccgcgca
      481 gatcaagaag atcgaccaca tcctcacgaa gatccagttg caaccaggcc agcgtctgct
      541 cgacatcggc tgcggctggg gtgcgctcgt cttgcgcgcc gcccagaaat tcggggcgaa
      601 atgcgtgggc gtcacgctct cgcaaaacca gttcgatctc gccacgaggc gcgtgaaaga
      661 cgccgggctg gaaggccaga tcgaaatccg cttgcaggat tatcgcgacg tgcaaggcca
      721 gttcgaccgg atcacgagcg ttggcatgtt cgagcacgtc ggccgcaaga acctgcccgg
      781 ttacttcgcg aaggtgcgcg aactgctggt cgacgacggc attgccatga accacggcat
      841 tacgtcgacc gacttcaaca gcggcgagac ggcattgggc ggcggtgagt tcattgaccg
      901 gtacgtgttc cccgacggcg agttgccgca catcgggctt gcgctcgaag cgctgcagga
      961 gggcggcctg gaagctgtcg tcgtggaaag tctgcgccgt cattacgcgc gcacgctcga
     1021 catctgggcg gaaaatttcg aggcgaaggc ggaccaggca aaggcacttg tcgacgatga
     1081 aaaattccgc atctggcgcg tgtatcttgc aggttgtgcg tacgcattcg aaaacgacga
     1141 cgtgtcgatt tatcagattg tgtgccgcaa ggccggccgc agcgcgaaaa cgctgccgtg
     1201 gtcgcgccga tatatctacg acaaaccgct ctgagttcaa agcctgcttc tgccgcttcc
     1261 catgaacccg catccggtga tgaaccggat gcgggcgtgg atcagcacgc gctgcaagtg
     1321 gatctcttcg gggcggtgga cgcgcccgaa accgcggaca gcaaacctgc tccctcgtcc
     1381 ccgcctcgca caaaaacaaa atcacgcggc ggcgtattgc ctgcactcgc cgcacccgac
     1441 catcacgcgc tcgcccatcg ccttcccgac accgttcgta tcggcccgtc gacgtggtcg
     1501 tttcccggct ggcgtgacat cgtctatggc gacgaatact cgtccgcgaa gctttcccgc
     1561 gatggcctca acgcgctcgg cgcgcatccg ttgctgcgct gcgtatcgat agaccgttcg
     1621 ttctacgggc ctttgtcggt ggcggactat gcgcgctacg cgaaccaggt gccggctcat
     1681 tttcgcttca tcgtgaaagc gccggcgtca gtcaccgatg ccaccgtccg cggcgacaaa
     1741 ggcgcacccg ccggcgataa ccccgccttc ctcgacgcgt gcatcgcgat caatgacttt
     1801 gtgcagccgt gcatcgccgg cctgggtgaa aaagccggcg cgctcgtgtt ccagattccg
     1861 ccgttgcc
//
LOCUS       DATGBK010001734         1735 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_44275, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001734 DATGBK010000000
VERSION     DATGBK010001734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44275"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..605
                     /locus_tag="VKJ77_24390"
     CDS             <1..605
                     /locus_tag="VKJ77_24390"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011352891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HMC48480.1"
                     /translation="LQSENVYVLFAPTEADLYPEPQQYRVHPPTNLGDILEGEFRPGF
                     FQGVCTVVMKLMSCVQPRVAVFGKKDYQQLMIVRQMCHQFALPTEIIAAETVRDADGL
                     ALSSRNRFLQAAERAEAPILAKTLNRVRDAVLAGNRDFASIEKEAVESLAQRGWQPDY
                     IAVRRRVDLLPPGPADTATPLVVLAAAKLGNTRLIDNLEV"
     gene            639..1025
                     /gene="panD"
                     /locus_tag="VKJ77_24395"
     CDS             639..1025
                     /gene="panD"
                     /locus_tag="VKJ77_24395"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HMC48481.1"
                     /translation="MQRTLLKSKIHRATVTHCELHYEGSCAIDEDLLEAANLVENEQI
                     DIWNVNNGERLTTYAIKGERGSGMISLNGSAARRAQLGDLVIIAAFALVEEAELKAGW
                     KPDLVFVDEKNRIKGNRDHVPTQNWT"
     gene            complement(1141..>1735)
                     /locus_tag="VKJ77_24400"
     CDS             complement(1141..>1735)
                     /locus_tag="VKJ77_24400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HMC48482.1"
                     /translation="GVGKSTLSTNLAGYFAANGEWVALADLDKQQSAHGWLGLRPDTL
                     PKIEEWKTDVDAPSKPPKGLEKAVVDTPAGIHGTRLALALELADKVIVPLQPSMFDIL
                     ATQEFLVRLQKEKAIRKGTIEVGVVGMRVDARTKSADQLHRFVEGLDLPVLGFIRDTQ
                     NYVQVAAHGLTIWDVAKSRVEKDIEQWQPIIEWVSKK"
BASE COUNT          361 a          523 c          507 g          344 t
ORIGIN      
        1 agctccagtc cgagaacgtg tacgtgctgt tcgcgccgac cgaagccgat ctttatccgg
       61 agccgcagca atatcgggtg catccgccaa ctaatctggg cgacatcctg gaaggcgagt
      121 tccggccagg tttcttccag ggcgtgtgta cggtcgtgat gaagctgatg tcgtgcgtgc
      181 agccgcgcgt ggccgtcttc ggcaagaagg attatcaaca actgatgatc gtgcggcaga
      241 tgtgccacca gtttgcgctg cccacggaaa tcatcgccgc tgaaaccgtg cgcgacgccg
      301 acggcctggc gctcagctcg cgcaatcgct tcctgcaagc ggccgagcgc gccgaagcgc
      361 cgatcctggc aaaaacgctg aatcgtgttc gcgacgcggt gctggcgggc aaccgcgact
      421 ttgcatcgat agaaaaagaa gccgtggaat cgcttgcgca gcgcggctgg cagccagatt
      481 acatcgcggt gagaaggcgc gtggacctgc tgccgcccgg cccggccgat accgcgaccc
      541 ctctcgtcgt gctggccgcc gccaagcttg gcaacacccg cttgatcgat aacctggaag
      601 tttgagcgag aattgagtga aaatttagag agaaacgcat gcagcgaacg cttttgaaat
      661 cgaagattca ccgcgccacg gtgacgcatt gcgaattgca ttacgaaggc tcgtgcgcca
      721 tcgacgagga cttgctggaa gccgcgaatc tggttgaaaa cgagcagatc gacatttgga
      781 acgtgaacaa cggcgagcgc ctgacgacct atgccatcaa gggcgagcgc ggcagcggga
      841 tgatttcgct gaatggatcg gcagcgcgcc gggcgcaatt aggcgacctg gtgatcattg
      901 ctgcgttcgc gctggtcgaa gaggcggaac tgaaggcggg ctggaagccg gatctcgtgt
      961 tcgtcgatga aaagaaccgt atcaagggaa accgcgacca cgtgccgacg caaaactgga
     1021 cctgaatctg gtctggtctt gtgcgaaaac gcaaaaaacg ccggttggct ttcatgaaaa
     1081 tgaagccaac cggcgttttt tgggccggag ggtcgcctgc ttctacttgt acttgtactt
     1141 ttacttcttc gacacccatt caataatcgg ctgccactgc tcgatatcct tctccacccg
     1201 gcttttagcg acgtcccaga tggtgagccc gtgcgccgcg acctgcacgt agttctgcgt
     1261 atcgcggata aaacccagca ccggcagatc aagcccttcc acgaaccgat gcagctgatc
     1321 cgctgatttc gtcctggcat ccacccgcat acccactaca ccgacctcga ttgtgccctt
     1381 gcgtatcgcc ttctctttct gcagccgaac gaggaattcc tgcgtggcga gaatatcgaa
     1441 catggacggc tgcaacggca cgatcacctt gtccgccagc tccagcgcca gcgcgagacg
     1501 ggtgccgtga atcccggcag gcgtgtcgac aactgccttc tccagacctt tcggcggctt
     1561 cgacggcgca tcgacatcgg ttttccattc ttctattttc ggcagcgtgt ctgggcgcag
     1621 gcccagccag ccgtgagcag actgctgctt gtccaggtcc gcgagcgcga cccactcgcc
     1681 gttcgccgca aaataaccag ccaggttcgt agacagcgtg ctcttgccca cgccg
//
LOCUS       DATGBK010001735         2890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_136294, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001735 DATGBK010000000
VERSION     DATGBK010001735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136294"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..988)
                     /locus_tag="VKJ77_24405"
     CDS             complement(<1..988)
                     /locus_tag="VKJ77_24405"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013592292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HMC48483.1"
                     /translation="MKVSADVRAMIERRKKGHTLEAPFYASEEVHALDMDAIFRRHWI
                     QVAVEPDVPEAGDYMTVELGNDSILIVRDDDMQIRAFHNVCRHRGARLCSSEKGSLGN
                     IVCPYHSWTYNLNGDLMFAEHMGEQFDKCKHSLKKVHLENLAGLIFICLAETPPADFA
                     VLRASMEPYLLPHGLADCKVAAAIDIIEKGNWKLTMENNRECYHCVANHPELTISLYE
                     YGFGYQRSADNEEAMAAFERTVEERTKQWEAMNLPSKEIDRLADLVSGFRTQRLPLDR
                     SGESQTMDAKVASKKLLGGFQQADLGGLSFWTQPNSWHHFMSDHIVSFSVIPL"
     gene            complement(1052..1858)
                     /locus_tag="VKJ77_24410"
     CDS             complement(1052..1858)
                     /locus_tag="VKJ77_24410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009898046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HMC48484.1"
                     /translation="MSNVSTTKRLSKIAVLVSVGRHPVSGTARYSRNDAAALTLATRL
                     AAQHRATLDVLHAGDPTNPALREYLALGAAKVEVLAVAAGDEIAPALTARLKGYDLVL
                     TGTRAEGAEDSGMLPYQLADALGFALLASAVDIDVEADVDAPQVTVRQFLPKGLRRRV
                     QASLPALVAVHPMASATPRYAYAKLREGTIEPVLVSAANASASLAWSIKPATAKPVRL
                     AAAEKRSGHARMLSATTTESRGGSVVIEGTSVEKAQVILAYLREHQLVDY"
     gene            complement(1899..>2890)
                     /locus_tag="VKJ77_24415"
     CDS             complement(1899..>2890)
                     /locus_tag="VKJ77_24415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HMC48485.1"
                     /translation="RGSLDDHARQTLAAAALLADSTTQVVLLVLGELKDDAAALGADK
                     VIEIPVFDRRAFAPNTALNALAACVAAYSPAHVFLPDNATGDGDLGRRYAAQAKASVA
                     AHVVEIDAAHVAVYTQARKAFAIRSLPDVILLAPNAVDARLPFVGAGERVAAEQFLVE
                     DHQKTSPYKDLGIEEIDAAQVALEEADFIVSAGNGVTDVPAFERLASTVGAAIGASRV
                     AVDDGKFPRDKQIGATGKTVDASIYIAFGISGAVQHLQGIKDCRHVIAVNLDASAPIA
                     KRANLTIIGDAQETIAALTVAAAAARNARANPGAMATSGGSASSAAKLEGALA"
BASE COUNT          517 a          908 c          857 g          608 t
ORIGIN      
        1 acagcggaat caccgagaag ctcacaatat gatcgctcat gaagtgatgc cacgaattcg
       61 gctgcgtcca gaacgagaga ccaccgagat cggcttgctg gaaaccacca agcaatttct
      121 tcgatgccac cttggcgtcc atcgtctgcg actcgccact gcgatcgagc ggcaaacgtt
      181 gtgtgcgaaa accactgaca aggtcagcca gccggtcgat ttccttcgac ggcaggttca
      241 tggcttccca ttgtttcgtg cgttcttcaa cggtcctctc gaaggccgcc attgcttctt
      301 cgttgtcggc ggaacgctgg taaccgaagc catattcgta cagcgagatg gtcagttccg
      361 gatggttcgc gacgcagtgg taacactcgc gattgttctc catcgtgagc ttccagttgc
      421 ccttttcgat gatgtcgata gcggcagcca ccttgcaatc agcaaggcca tgcggcaaca
      481 aatacggttc catcgaagca cgcaatacgg cgaaatccgc gggcggcgtt tcggcaaggc
      541 agataaaaat caggcccgca aggttttcga ggtggacctt cttgaggctg tgcttgcact
      601 tgtcgaactg ctcgcccatg tgctcggcga acatcaggtc gccgttcagg ttgtaggtcc
      661 agctgtgata cgggcacacg atattgccga gcgagccctt ttccgagctg cacaggcgcg
      721 cgccgcgatg ccggcagacg ttatggaacg cgcggatctg catgtcgtcg tcacgtacga
      781 tcaggatgga atcgttgccg agttccaccg tcatgtagtc gcctgcttcc ggcacgtccg
      841 gctcgaccgc gacctggatc cagtgccgcc ggaagatcgc gtccatgtcg agcgcgtgga
      901 cttcctcgct cgcgtagaac ggcgcttcta gcgtgtggcc cttcttgcgg cgttcgatca
      961 ttgcgcgaac gtctgcggaa actttcatcg tgtactccgt gttttggtgc cccgcccgac
     1021 cttgaacgta cgggaatttt cgtgtcgcaa atcagtaatc gacgagttga tgctcgcgca
     1081 aatacgccag gatcacttgt gctttttcga cggaagtccc ttcaattacg acgctgccgc
     1141 cccggctttc cgtggtcgtg gccgagagca tgcgcgcatg gcccgaccgc ttttctgcag
     1201 ccgccagccg cacgggtttt gccgtcgcgg gcttgatcga ccaggcaagg cttgccgatg
     1261 cgttggcggc actcacgagc accggttcga tcgtgccctc gcgcagtttc gcgtaggcgt
     1321 atcgcggcgt ggcgctggcc atcggatgca cagcgaccag ggcaggcaag cttgcttgta
     1381 cgcgccggcg caaccctttc ggcaggaatt gccggacggt gacttgtggc gcgtcaacgt
     1441 cggcttcaac gtcgatatcg accgccgacg caagaagcgc aaagcccaat gcatcagcga
     1501 gttggtacgg cagcatgccg ctgtcttccg cgccttcggc gcgcgtgccg gtcagcacga
     1561 ggtcgtaccc cttcaaacgt gctgtcagcg ccggcgcaat ttcgtctccc gcggctacgg
     1621 ccagcacttc cacctttgcc gcgcccaacg cgagatattc gcgcaatgcg ggattggtcg
     1681 gatcgcctgc gtgcaacacg tcgagcgtcg cccggtgttg ggcggcgagc cgcgttgcca
     1741 gcgtcagcgc ggcggcgtcg tttcggctgt atcgtgcggt cccgctcacc ggatgacggc
     1801 ccaccgagac gagcacggcg atcttgctca ggcgcttcgt ggtcgataca ttactcacgc
     1861 tagtcaattg aatgctcccc gagcgtgctt gatgagattc atgcgagcgc tccttccagc
     1921 ttcgcagcgc tcgaggcgct gcctccggac gtcgccatcg cgcccgggtt ggcgcgcgcg
     1981 ttacgcgccg ctgcggccgc gaccgtcaat gccgcgatcg tttcctgcgc gtcgccgatg
     2041 atcgtcaggt tcgcgcgttt tgcgatcggt gcgctcgcgt ccaggttcac cgcaatcacg
     2101 tgacggcaat ccttgatgcc ctgcaagtgc tgcaccgcgc cggagatacc gaacgcgatg
     2161 tagatgctcg catcgaccgt cttgcccgtt gccccgatct gcttgtcgcg cgggaacttg
     2221 ccatcgtcga ctgctacacg gcttgcgccg attgcagcgc ctaccgtact cgcaagacgc
     2281 tcgaatgccg gaacgtcagt cacgccatta cccgctgaca cgatgaaatc cgcctcttca
     2341 agcgccacct gcgcggcatc tatttcttcg atgcccagat ctttgtaggg actcgttttc
     2401 tggtggtctt caacgaggaa ctgctctgcc gcaacccgct cgcctgcgcc gacgaatggc
     2461 aaccttgcat cgacggcatt cggggcgagc aggatcacat cgggaagcga gcggatagca
     2521 aatgccttgc gcgcttgggt ataaaccgcc acgtgcgcgg cgtcgatttc gactacgtgc
     2581 gccgccaccg atgccttcgc ttgcgccgcg tatcggcgac caagatcgcc atcgccggtc
     2641 gcgttatcgg ggaggaaaac atgcgcgggt gaatacgccg cgacacatgc ggcgagagca
     2701 ttcagcgcgg tattgggtgc gaatgcgcga cgatcgaata ccggtatctc gatcaccttg
     2761 tccgcgccga gcgcagccgc gtcgtccttc aattcgccca gcacaagcaa tacgacttgc
     2821 gttgtcgagt ctgcaagtaa cgccgcggcg gcaagcgttt gtcgcgcgtg atcatccagt
     2881 gaaccacggt
//
LOCUS       DATGBK010001736         3982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_206092, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001736 DATGBK010000000
VERSION     DATGBK010001736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3982
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206092"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..439
                     /locus_tag="VKJ77_24420"
     CDS             <1..439
                     /locus_tag="VKJ77_24420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004195394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC48486.1"
                     /translation="ENGDVDAWIVWDPYYAAAQKALSVRTLADYTGLPKPFNFYEATR
                     SFATQNPQAVRAVIDQLRTTGAWVTQHPADTAALLAPKIGLDAGLVETWVRRVPYGAR
                     PIDENIVTTQQGVADMFYRAKLIPKAVTVKDNVWRDQDALTAR"
     gene            complement(548..624)
                     /locus_tag="VKJ77_24425"
     tRNA            complement(548..624)
                     /locus_tag="VKJ77_24425"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(588..590),aa:Arg,seq:tct)
     gene            complement(727..1557)
                     /locus_tag="VKJ77_24430"
     CDS             complement(727..1557)
                     /locus_tag="VKJ77_24430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HMC48487.1"
                     /translation="MTLWFLIFLSVLQGVTELFPVSSLGHTLLVPGLIGMHIDKHAPQ
                     LLPFLVALHLGTALALLWYFRKRWVALIKGFIGSLRGRKNADGHMMWALIIGTIPTGI
                     VGLVLEKRLEALFHDLRIVAAALMVNGVLLWVGDRLTRARAERAPEDLTFKQAFLVGL
                     AQIGALIPGFSRSGLTIIAGVGAGMSSEKAAEFSFLLGTPIIFAAGVLELPKLFHAPD
                     QLFDAALGGVLTGIAAYLSVRFLMRYFEGRGRLAAFGLYCVVAGAFCLGWFMLHQQPV
                     "
     gene            2117..3022
                     /locus_tag="VKJ77_24435"
     CDS             2117..3022
                     /locus_tag="VKJ77_24435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase"
                     /protein_id="HMC48488.1"
                     /translation="MSSQPEDILEITFDDAVLELAPRAGGRLMTWRVGGEPVIFWPAA
                     PDWSNFVKIRGGNPLLFPFLGRHFVDGEIGKWRDLEGVVHELPMHGFARNLPFEHRRD
                     PDGHGVRMTLVDNDFTRQGYPFAFRFEAAYRLVDAVTLDVELTTSNPGEVPLPYYAGH
                     HFYFALPHDQRGISSLELPRTETRRQLDDGSITDPQAGAARYALDDTNILDRFHCFTG
                     PSDNPVRLVTPGLKRAVNFDLQRPDSVPWYAVTTWTLEPTSDFYCIEPWVGLPDAIHN
                     GQGLRWLAPGKTETAALRLSVSPTA"
     gene            3205..3903
                     /locus_tag="VKJ77_24440"
     CDS             3205..3903
                     /locus_tag="VKJ77_24440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004526694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HMC48489.1"
                     /translation="MLKIIRRLTCASLIAVLAACGSAPVGPGFYRVERGDTVSKVARA
                     NRTSVQNIARWNNLTDPNAIEVDQVLRVAPPAGSVTPAGSSAPPARAGGAEPSDSAAS
                     SSALVTPATTISLIWPTQGSVIRGFDGKSSKGIDIAGASGTQIVAAAAGTVVYAGNGL
                     RGYGNLLIIKHNADYLTAYAHNRALLVKEGQSITQGQAIAEMGDTDTNRVMLHFELRY
                     KGSSIDPSRYLPAR"
BASE COUNT          865 a         1219 c         1162 g          736 t
ORIGIN      
        1 cgaaaacggc gatgtcgatg catggatcgt atgggacccg tattacgctg ccgcgcagaa
       61 ggcgttgtcg gtgcgcacgc tcgcggacta caccgggttg ccgaagccat tcaatttcta
      121 cgaggccacg cgcagcttcg ccacgcaaaa tccacaggca gtgcgtgccg tcatcgatca
      181 gttgcggaca accggcgcgt gggtcacgca gcaccccgcg gacacggcgg cgttgctcgc
      241 gccgaaaatc gggcttgatg ccgggcttgt ggagacgtgg gtacgccggg tgccgtatgg
      301 cgctagaccg atcgacgaga acattgtcac gacccagcag ggcgtggcgg acatgttcta
      361 tcgcgcgaag ctgattccga aggcggtgac ggtgaaggac aacgtgtggc gggaccagga
      421 cgcgctgaca gcgcgatagg cgtaacgact tttgaagcag tggcgtgatt gcgtgagctc
      481 gccctgctaa acatcacgcg atgctgcggt ttcgcacgcc cgaggcgttg agacgaaccc
      541 gaggttctgg tacggcagga gggactcgaa cccccgcccc tcggcttaga aggccgatgc
      601 tctatccagc tgagctactg ccgcgttgca gatgatccgg gattttacct catcgaaagg
      661 atgcgaggcc tcattccgag acctcgcccg ctcgaatgcg gtttaaaccc tcgcgttaaa
      721 cccgctttaa accggttgct gatgcaacat gaaccagcca agacagaacg cgcccgcgac
      781 cacgcaatac aaaccaaaag ccgccaaccg gccgcggcct tcgaagtaac gcatcaggaa
      841 acgcacgctt aagtacgccg cgatgcccgt cagcacgcca ccgagggcgg catcgaagag
      901 ttggtccggt gcatggaaca gcttcggcaa ttcaagcacg ccggcggcga aaatgatcgg
      961 cgtgccaagc aggaacgaga actccgccgc tttctcggaa ctcatcccgg cgccgacgcc
     1021 cgcgataatc gtcagcccgc tgcgcgaaaa acccggaatc agcgcgccaa tctgcgcaag
     1081 accaaccagg aacgcctgct tgaacgtgag gtcttcaggc gcacgctcgg cgcgcgcacg
     1141 cgtcagccgg tcgccgaccc acagcagcac gccgttcacc atcaacgccg ccgcgacgat
     1201 ccgcagatcg tggaacagcg cctcaagccg cttttcaagc accagcccga cgatacccgt
     1261 cggaatcgtg ccgatgatca gcgcccacat catgtggcca tcagcgtttt tacggccgcg
     1321 cagcgatccg ataaacccct tgatcagcgc aacccagcgc ttgcggaagt accacagcag
     1381 cgcgagcgcc gtacccagat gcaacgcgac caggaacggc aacaactgcg gcgcgtgttt
     1441 atcgatgtgc atcccgatca ggccgggtac caaaagcgta tgtccaagac tgctgaccgg
     1501 gaacaattca gtcacaccct ggagtacgct cagaaaaatc agaaaccaca aagtcacgcg
     1561 tcgatcctct ttcgttattg gcgacaggca catagccgcg gcgctgcagc atatggccaa
     1621 gcaaaccggg ccgattatgc cggtcaccaa aagcagcgcc aagcctttgc gtcgtgcctt
     1681 tcgttatcga aagctaatcg tttgattaat cgaatacatt agtaataata aaaaaagccc
     1741 gttgtaataa cgggcttttt tgtttgattg cgtcacacct gcgtcacggt cgcaccttgt
     1801 ataaaaacag cagtgtgccg gcgccgaacg tgccaaaaat gaacactcca aacatcatcg
     1861 ccagatccat atcatcccct tcgttcggca ggaccgcttg atctgtgaga gatcgtcagg
     1921 gtcgaaagat gtttcatccg cgttacatcg tgcttgcatt atcgaggtaa tgaaaggggc
     1981 tgtgtcagtc gcaatttccc caaaagggtt tccccgtaga attgagccgc ccgttgcccc
     2041 agaccgtctg ttcgttgctc gttcgaaccc ttgtttgaac acgcagttcg tccacttatt
     2101 caaggagacc accgacatgt catcccagcc tgaagacatc ctggaaatca cgttcgatga
     2161 cgccgttctc gaactcgcgc cgcgcgcggg cggacgcctg atgacgtggc gcgtcggcgg
     2221 cgagcccgtt attttctggc cggccgcgcc ggactggtcc aacttcgtca agattcgtgg
     2281 cggcaacccg ttgttgtttc cgtttctcgg ccgccatttc gttgatggcg agataggcaa
     2341 atggcgcgat ctggaaggcg tcgtgcacga actccccatg cacggtttcg cgcgcaatct
     2401 accgttcgaa catcggagag acccggacgg ccacggcgta cgaatgacgc tcgtggataa
     2461 cgatttcacg cgccagggtt atccgttcgc gtttcgtttc gaggcggcgt acaggctggt
     2521 cgacgctgtg acgctcgatg tcgaactcac cacgtcgaac cccggcgaag tgccgctgcc
     2581 ctactacgcg ggccatcatt tctacttcgc cctgccgcac gaccagcgcg gcatcagcag
     2641 cctggaattg ccgcgcacgg agactcgccg gcaactcgat gacggttcaa tcaccgaccc
     2701 gcaagcgggc gcagcgcgct acgcgctgga cgacaccaac atcctggacc gttttcattg
     2761 ttttaccggc ccctccgaca acccggttcg ccttgtcaca ccaggtttga aacgcgcagt
     2821 gaatttcgac ctgcaacgcc ccgactcggt accctggtac gccgtgacga cctggacctt
     2881 ggagcccacg tcggatttct actgcatcga gccgtgggtc ggacttcccg atgccattca
     2941 taacggccag ggattgcgct ggctcgcgcc gggaaagacc gaaacggcag cactgcggct
     3001 gagcgtttca ccgactgcgt gaaaaatacg gaaggacact taaggacaga acacgcggga
     3061 taacgagcgg caaccatcgg ccaggtaggt cgcttctgag ggcagcgacg ccgggacggt
     3121 aaaatcggac atttcgccga tgcgcgttct ggtttgcctg ccgcagcgtt ttcggtttgt
     3181 gcggcgcttt acgaggtttt gagtttgcta aaaataattc gacggctgac ctgcgcgtca
     3241 ttgatcgcag tgctcgccgc gtgcggctct gcgccggtcg gaccagggtt ttatcgagtt
     3301 gaacggggcg acacggtgtc gaaggtcgcg cgggcgaacc ggacatcggt gcagaacatc
     3361 gcgcgctgga acaacctcac cgacccgaat gctatcgaag tcgaccaggt gctgcgcgtg
     3421 gcgccgccgg cgggaagcgt gacaccggcg gggtcatcag caccgccggc ccgcgcaggc
     3481 ggcgcggaac catcggactc ggcggcatcg tcgtctgccc tggtcacgcc ggccaccacc
     3541 atttcgctta tctggccgac gcaaggcagc gtgatccgcg gtttcgatgg caagagttca
     3601 aagggtatcg acattgccgg cgcgtcgggg acgcagatcg tcgcggcagc cgccggaacg
     3661 gtggtctatg caggcaacgg cctgcgcggt tacggcaact tgctgatcat caagcacaac
     3721 gccgactatt tgaccgccta cgcgcataac cgcgcgctgc tcgtgaagga gggccagagc
     3781 atcacgcagg gtcaagccat cgcggaaatg ggtgacaccg acacgaatcg cgtgatgctg
     3841 cattttgaat tgcgctacaa gggtagttcg atcgatccat cgcgctatct gccggcacgg
     3901 taacgcgccg gtcaattgaa gacaggcacg ctcaatgaag gcgggcgtgc caatcaaaca
     3961 cagggaagaa tcgatgaaat ta
//
LOCUS       DATGBK010001737         5142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_89897, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001737 DATGBK010000000
VERSION     DATGBK010001737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5142
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89897"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..656)
                     /locus_tag="VKJ77_24445"
     CDS             complement(<1..656)
                     /locus_tag="VKJ77_24445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011544698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48490.1"
                     /translation="MPLPLLALAIAAFGIGTSEFVIMGLLPNVARDLGVSIPAAGMLV
                     SGYALGVTIGAPILAIVTAKMPRKKALMSLMGVFIVGNLLCAVAPGYWMLMAARILTA
                     FCHGAFFGIGSVVAADLVAPNRRAQAIALMFTGLTLANVLGVPLGTALGQVAGWRATF
                     WVVTLIGLGAAGALAVCLPKHIEMRESSILREFNVLKNPQVLMVLGISVLASASLFSV
                     "
     gene            897..1349
                     /locus_tag="VKJ77_24450"
     CDS             897..1349
                     /locus_tag="VKJ77_24450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48491.1"
                     /translation="MTALRHFFPLIVAALLAFAVVPGVFAQEADASAGPMRTTGGSVV
                     FVQQGATFEAQIDGKPFDQLNARRIAHFQEPSGARMIVEAFDTGSPELVLYDFTKRPP
                     AVVRMTKRMKLTGVFWQRDEVVLKSADGWYRFQRGTLTKLMSSKMTYH"
     gene            complement(1343..2008)
                     /gene="pdeM"
                     /locus_tag="VKJ77_24455"
     CDS             complement(1343..2008)
                     /gene="pdeM"
                     /locus_tag="VKJ77_24455"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     endonuclease PdeM"
                     /protein_id="HMC48492.1"
                     /translation="MMLEALTVDIGGHALVLSAARAAFDPVRQTLFIADAHIGKDAVF
                     RARGIPVPEGSTGETLARLDTLISMHRPATIVFLGDLLHARESHALTTLGALAEWRER
                     HAGLRLILVEGNHDRHAGGPPDALALEVVEEPYRLGPWALCHYPQRVTGAYALSGHEH
                     PVYRLATRLDSARLPCFRFGADAGVLPAFGAFTGGFEVNASAHGERIFVVAGDRVMAV
                     RTQ"
     gene            complement(2005..4635)
                     /locus_tag="VKJ77_24460"
     CDS             complement(2005..4635)
                     /locus_tag="VKJ77_24460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011492474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response DEXH box
                     helicase"
                     /protein_id="HMC48493.1"
                     /translation="MSTSADDNEREHQETELNNESKRRSPRPRRIPKTRAAQTKADAV
                     AELFQPVPIVIDQDVADTPFEARLAAWFERHDWQPFPFQREVWTEILGGASGLLHATT
                     GAGKTWAVWLGALAAYTPEHTTRTLPAPLTVLWITPMRALAADTARALQTAVTELAMP
                     WSIGLRTGDTPSAERARQNKRMPSALVTTPESLTLMLTRANGEDEMKQVRLVVVDEWH
                     ELLGNKRGTQTQLALARLAHWRPELQVWGLSATLGNLDLARDALLAPVKTQRVVVRGA
                     QPKTLIVDTLIPDTIERFPWGGHLGTRQVKPVAAEIDHARSSLVFTNTRSQAEVWYQA
                     LLEARPDWAGLIALHHGSLDQEVRAWVELGLKSGQLKAVVCTSSLDLGVDFLPVDRVF
                     QIGSPKGVARLMQRAGRSGHAPGRASRVTIVPTHALELVEAAAARWAVEQRRIEGREM
                     PNKPLDVLVQHLVTIAIGGGFKARELFAEVRTTYAYRDLTQQEFDWALAFVERGGTSL
                     AAYPDYHRVTLDADGVYRVPREDLVRRHRNNVGTIVANATINIAYMTGGRIGAMEESF
                     ISRLKPGDVFTFGGRALELVRVREMTAYVKRATSSRGAMPQWAGSKMPLSSELADATL
                     MMLARAMTGVYDEPEMQAVRPLLELQAKWSALPEPGVLLVELIRSREGHHLFCYPFAG
                     RMAHVGLGSLIGWRVARDQPSTFSISMNDYGFELLSAQPFDWERLIHEGLFSPDNLEH
                     DILASLNSSELAARRFREIARVSGLIFQGHPGQQKSARQLQASSGLFYEVFRRHDSGN
                     LLLAQAEEEVMLQELELDRIRAALKSMSASRLALTRPKKPTPFAFPLIIARLREKVST
                     EKLSDRVARMLADLEKAARA"
     gene            complement(4632..>5142)
                     /locus_tag="VKJ77_24465"
     CDS             complement(4632..>5142)
                     /locus_tag="VKJ77_24465"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012733543.1"
                     /note="catalyzes the ATP-dependent formation of a
                     phosphodiester at the site of a single strand break in
                     duplex DNA; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HMC48494.1"
                     /translation="DESRGRGVEGLMLKGRESLYGVGRTKASGTWWKWKIDPYAIDAV
                     LLYAQRGHGRRASLYTDFTFAVWDEADGVRTLVPFAKAYSGLTDEEMRKVDAVVRKTT
                     IEKFGPVRSVTPTLVFEIGFEGIQASPRHKSGIAVRFPRMLRWRTDKHINDADTLGML
                     KGFLEGAAP"
BASE COUNT          996 a         1655 c         1556 g          935 t
ORIGIN      
        1 aacacggaaa agagactcgc cgatgccagc acgctgatgc cgagcaccat cagcacttgc
       61 gggttcttga gcacgttgaa ttcgcgcagg atgctcgatt cccgcatctc gatgtgcttc
      121 ggcaggcaca cggccagcgc accggccgcg cccaggccga tcagcgtcac cacccagaac
      181 gtcgcgcgcc aaccggcgac ctgacccagc gcggtgccaa gcggcacgcc gagcacgttc
      241 gcaagcgtga ggccggtgaa catcagcgca atggcttgcg cgcggcggtt gggcgcgacc
      301 aggtccgcgg cgaccacgga gccgatcccg aagaacgcgc catgacagaa cgcggtcaga
      361 atgcgcgcgg ccatcagcat ccaataaccc ggcgcaacgg cgcacagcag attgccgacg
      421 atgaacacgc ccatcaggct catcagcgct ttcttgcgcg gcattttcgc ggtgacgata
      481 gcgagaatgg gggcgccgat agtcacgccc agcgcataac ctgaaaccag catgccggct
      541 gcgggaatgg atacaccgag atcccgcgcg acgttgggca acaggcccat gatgacgaat
      601 tcggacgtac cgataccgaa cgcggcaatg gcgagggcga gaaggggcag aggcatgggg
      661 taagcgggga ctgagtgctg gccggtcgcg cgttatcggg gtgaagaacg caggcttggg
      721 cgagctgaag ggatcaaatt gtaccgaacg ttgtcgggtt tgcttggtga aaaccctgag
      781 atttgtgtag ttgattcaac gagttggttt ttcagccttg tgcgaggctc tcggtgttgc
      841 tttttgccat cgggcggact aggttgcggg ttcctgcttt tcaaccaagg accttcatga
      901 ccgcactccg gcattttttt ccgttgattg ttgccgcgct gctggcgttc gcggttgtgc
      961 cgggggtgtt tgcccaggaa gccgacgcga gtgcgggacc gatgcgcacc acgggcggca
     1021 gcgttgtgtt cgttcagcaa ggggccacct tcgaagccca aatcgatggc aaaccgttcg
     1081 atcagctgaa cgcccgccgc attgcgcatt tccaggagcc gtcgggggcg cggatgattg
     1141 tcgaagcatt cgataccggc tcacccgaac tcgttctcta cgatttcacc aagcgcccgc
     1201 ccgcggttgt gcgcatgaca aagcgcatga aactgaccgg cgtgttctgg cagcgcgatg
     1261 aagtggtgct gaaaagtgcc gatggctggt acaggttcca acgcgggacg ctaacaaaac
     1321 tgatgtcatc gaagatgact tatcactgag tccgcactgc catcacccga tccccggcga
     1381 ccacgaaaat ccgctcgccg tgcgcgcttg cgttcacctc gaagccgccg gtaaacgcgc
     1441 cgaacgcagg cagcacgcca gcatccgcac caaaacgaaa acacggcaat ctcgcgctat
     1501 cgagccgcgt cgcgagccgg tacaccggat gttcgtgccc tgacaacgca tacgcgcccg
     1561 tcacgcgctg agggtagtga cacagcgccc aaggcccgag cctgtacggt tcttcaacca
     1621 cctcgagcgc cagcgcgtcg ggcggcccgc cagcatggcg atcatgattg ccttccacga
     1681 ggatcagccg caagccggca tgccgctcgc gccactcggc caacgcgccg agcgtagtca
     1741 acgcatgtga ctcacgtgca tgcagcagat cgccgagaaa cacaatcgtc gcaggccgat
     1801 gcatcgagat caaggtatcc agacgcgcaa gcgtttcgcc cgtcgaacct tccggcacgg
     1861 gaatgccccg agcgcgaaac acagcgtcct tgccaatatg cgcatcggcg ataaacaagg
     1921 tttgccgcac cggatcgaac gccgcccgcg ccgccgacaa cacgagcgca tgcccgccaa
     1981 tatccaccgt cagcgcctcg agcatcatgc gcgtgccgcc ttttccagat cggcgagcat
     2041 gcgcgcgacg cgatcagaca acttctcggt gctcaccttc tcccgcaacc gcgcgatgat
     2101 cagcggaaac gcaaatggcg tcggtttctt cgggcgcgtc agcgcgagcc ggctcgcgct
     2161 catgcttttg agcgcggcgc gtatcctgtc aagttcgagt tcctgcaaca tgacctcttc
     2221 ctcggcctgc gcaagcagca ggttcccgct gtcatgccgg cgaaaaactt catagaaaag
     2281 cccgctcgat gcctgcagtt gccgcgcact tttttgttgt ccgggatgtc cctggaagat
     2341 cagccctgac acccgcgcga tctcgcgaaa acgccgagcg gcaagctcgg acgaattgag
     2401 gctggcgaga atgtcgtgtt cgagattatc gggcgaaaaa agtccctcgt gtatgagcct
     2461 ctcccagtcg aagggttgcg cggacaacaa ctcgaagccg taatcgttca tcgatatgga
     2521 gaacgtactc ggctgatcgc gcgccacgcg ccaaccgatc agcgacccaa gcccgacatg
     2581 cgccatccgt cctgcaaacg gatagcagaa caagtgatgc ccctcgcgcg aacgaatcag
     2641 ttcgaccagt aatacacccg gctccggcag cgccgaccac ttcgcctgca attcgagcag
     2701 cggccgcaca gcctgcatct cgggttcgtc gtagacgccg gtcatggcac gcgcgagcat
     2761 catcagcgtg gcatcggcga gttcggaaga aagcggcatc ttgctgccgg cccattgcgg
     2821 catcgcgccg cgtgaggacg tcgcgcgttt cacgtacgcg gtcatttcgc gcacgcgcac
     2881 gagttccagc gcgcggccac cgaacgtgaa gacgtcgccg ggcttcaggc gcgagatgaa
     2941 cgactcttcc atcgcaccaa ttcgaccacc cgtcatatac gcgatgttga ttgtcgcgtt
     3001 cgcgacgatc gtaccgacgt tgttgcggtg gcgccggacc aggtcctcgc gcggcacgcg
     3061 atacaccccg tcagcatcga gcgtcacgcg gtgatagtcg gggtacgctg cgagcgacgt
     3121 gccgccgcgt tcgacaaacg ccagcgccca atcgaactcc tgctgcgtca ggtcgcgata
     3181 tgcgtaggtc gtgcgtactt cggcgaagag ttcgcgtgcc ttgaagccgc cacctatggc
     3241 gatggtcacc agatgctgga cgagcacatc gagcggcttg ttgggcatct cgcggccttc
     3301 tatgcgccgt tgctcgacgg cccagcgcgc ggccgctgct tccacgagtt cgagcgcgtg
     3361 cgtcggtacg attgttaccc gcgatgcccg ccccggcgcg tgacccgagc gtccggcgcg
     3421 ctgcatcaac cgagcgacac ccttgggcga gccgatctgg aacacgcgat cgaccggcaa
     3481 gaagtcgacg ccgagatcga ggctcgacgt acagaccacc gctttcaact ggccgctttt
     3541 caggccgagt tcgacccacg cgcggacttc ctgatccagc gacccgtgat gcaatgcgat
     3601 caaacccgcc cagtcgggac gtgcttcaag cagcgcctga taccagacct cggcctgtga
     3661 gcgcgtgttg gtgaagacga gcgaactgcg cgcatggtcg atctcggcag cgaccggttt
     3721 gacctgccgc gtgccgagat gaccacccca tggaaaacgt tcgatggtgt cgggaatcag
     3781 cgtatcgacg atcagcgttt tcggctgcgc gccccgcacc acgacacgct gcgttttcac
     3841 cggcgcgagc aatgcgtcgc gggcgaggtc gagattgccg agcgtcgccg ataaccccca
     3901 cacctgtaac tcaggccgcc agtgcgcaag acgagcaagg gcgagctgcg tttgcgtgcc
     3961 gcgtttattc ccaagcaact catgccattc atcgacaaca accagccgca cctgcttcat
     4021 ctcgtcttcg ccgtttgcgc gcgtgagcat cagcgtgaga ctttcaggcg tggtgaccag
     4081 cgcgctcggc atgcgcttgt tttgccgcgc gcgctcggcg gaaggggtat cgccggtgcg
     4141 caaaccgata ctccacggca tcgcgagttc cgtcaccgcg gtttgtaacg cgcgcgcggt
     4201 atcggcggcg agggcacgca tgggtgtgat ccacagcacg gtgagcggcg cgggcaaggt
     4261 gcgtgtcgtg tgctcgggcg tatacgccgc cagcgcgcct agccataccg cccacgtttt
     4321 acccgcgccg gtggtcgcgt ggagcaggcc gctcgctccg cccaaaatct cggtccacac
     4381 ttcgcgttga aacggaaacg gttgccagtc gtgccgttcg aaccaagcgg cgagacgcgc
     4441 ttcgaacggc gtgtccgcaa cgtcctggtc gatgactatc ggcacgggct gaaacagctc
     4501 ggcaacggca tcggccttcg tctgcgccgc gcgtgttttc ggtatccgcc gcggacgcgg
     4561 agagcggcgt ttggactcgt tatttagttc ggtttcctga tgttctctct cattgtcgtc
     4621 ggccgacgtg ctcatggcgc cgccccttcg aggaaaccct tgagcatgcc gagtgtatcg
     4681 gcgtcgttaa tatgcttgtc cgtacgccat ctcaacatgc gtggaaaccg cacggcaatg
     4741 ccagatttat ggcgcggact tgcctggatc ccttcgaagc ctatctcgaa cacaagcgtc
     4801 ggcgtgacgc tgcgtaccgg cccgaatttt tcgatggtcg tcttgcgcac gaccgcatcg
     4861 accttgcgca tctcttcgtc cgtcaagccg gaatacgcct tcgcgaaagg cacgagggtg
     4921 cgcacgccat cggcttcgtc ccacacggcg aaggtgaagt cggtgtacaa actcgcgcgc
     4981 cggccgtggc cgcgttgcgc gtacagcaaa acggcgtcta tggcgtaggg atcgatcttc
     5041 catttccacc atgttccgga agccttcgtg cggccgacac cataaagcga ttcacgcccc
     5101 ttcagcatca agccttcaac gcctcggccg cggctttcgt cg
//
LOCUS       DATGBK010001738         1542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_89902, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001738 DATGBK010000000
VERSION     DATGBK010001738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89902"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VKJ77_24470"
     CDS             complement(<1..239)
                     /locus_tag="VKJ77_24470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HMC48495.1"
                     /translation="MNTAFKSATTIEGIVPVMLTPFDDAGAIDYAGLERLIEWYLAHG
                     SDALFAVAQSSEMQFLSLAERAELARFVVDKVAGRV"
     gene            complement(319..>1542)
                     /locus_tag="VKJ77_24475"
     CDS             complement(319..>1542)
                     /locus_tag="VKJ77_24475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011656660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48496.1"
                     /translation="RGTLAVANESIRADLGLSLGQMGILLSAFSWSYALCQLPVGALV
                     DRLGPRWLLGIGLIVWSFAQAAGGLASTFGYFVVTRIVLGIGEAPQFPSAARVVSNWF
                     PLRSRGAPTGIFNAASPLGIALAPLCLSILIASTSWHWAFIVTGAAGLLVSIVWLMVY
                     RDPVRSQMTDVERQYLDADVDQDTANKAAGKLTFADWRALFSYGTTWGMLIGFFGSVY
                     LNWVYLSWLPGYLRTARHMSLERSGIAAAVPFFCGFIGALLAGWLSDLITRRSRSAVA
                     GRRNAVVITMLGMVVFTIPAALVESNTIALVCISVVIFLANAASACSWSLATAAAPAS
                     RVGSLGAIQNFGGFLGGALAPVATGYIAQAFSFVPALLTGAGIALVGAIAYLVLVREP
                     IPEREPESATLHLPA"
BASE COUNT          347 a          478 c          477 g          240 t
ORIGIN      
        1 acgcggcccg cgactttatc gacgacaaaa cgtgccagct cagcccgctc ggccagactc
       61 aggaattgca tttcgctcga ctgagcgacc gcgaacagcg cgtccgagcc gtgagccaga
      121 taccactcga tcaggcgttc gagcccggcg tagtcaatcg cgccggcatc gtcgaatggg
      181 gtcagcatca ccgggacaat cccttctatg gtggtggctg atttgaatgc ggtattcatg
      241 ggttttctct ctattttcag ggtcacgcgc gcttatgccc agttaagcag tggcgtaagc
      301 gggcgaatat ctcaggcgtc aggctggtag atgcagtgtt gctgattcgg gttcgcgttc
      361 gggtatcggc tcgcgaacca gtacaaggta tgcgattgcg ccaacgagtg cgatgccggc
      421 gccggtcagc aaagcgggca cgaacgagaa cgcctgggcg atgtacccgg tcgcgacggg
      481 cgctagcgcg ccgccgagga aaccgccgaa gttctggatc gcacccagcg aacccacgcg
      541 gctggcgggg gccgccgcag tagcgagcga ccacgagcag gccgacgccg cgttcgccag
      601 gaagatcacg accgatatgc aaacgagggc aatcgtatta ctctcgacga gcgctgcggg
      661 aatggtgaaa acgaccatgc cgagcatcgt gatcacaaca gcattgcgac gacccgccac
      721 cgccgacctg ctgcgccggg taatcaggtc ggacagccac cccgccagca gggcgccgat
      781 aaacccgcag aaaaacggta cggccgcggc aatgccgctg cgctccaggc tcatgtgccg
      841 cgccgtgcgc aagtagcctg gcagccagct cagatacacc cagttgagat acacagagcc
      901 gaagaagccg atcaacatgc cccacgtggt gccgtaggag aacagtgcac gccagtctgc
      961 aaacgtgagt tttcctgctg ccttgttggc cgtgtcctga tcgacgtccg catcgaggta
     1021 ctgacgctcg acgtccgtca tctgcgacct gacgggatcg cgatagacca tcagccagac
     1081 gatagagacg agcaaacccg ccgcgcccgt cacgataaag gcccagtgcc agcttgtgga
     1141 tgcaatcaga atggacaggc acagtggcgc aagcgcgata cccagtggtg acgctgcatt
     1201 gaagatgccc gtgggcgcgc cgcgcgagcg caaaggaaac cagttgctga ccacgcgtgc
     1261 cgctgagggg aactgcggtg cttcgccaat gccgagcaca atgcgcgtga ccacgaaata
     1321 tccaaacgtc gaagcgagtc cgcccgccgc ctgagcgaac gaccagacga tcaagccaat
     1381 gcccaggagc cagcgcgggc ccagccggtc gaccagcgcg ccgacgggta gttgacacag
     1441 cgcgtagctc cacgaaaatg ctgatagcaa gattcccatc tgtccgagcg aaagaccgag
     1501 atcggcacga atggattcat tcgcaaccgc aagggtgccg cg
//
LOCUS       DATGBK010001739         1801 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_275907, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001739 DATGBK010000000
VERSION     DATGBK010001739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275907"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VKJ77_24480"
     CDS             complement(<1..388)
                     /locus_tag="VKJ77_24480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018444048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48497.1"
                     /translation="MKLDVTPNYRRSAAFASSTHVASVIVAAALSFGTAANAASSEVS
                     GALQLPLSGAAYRVAQEGYASFARHDYETSAAQAREAIRQRPEVVSLRLLLANSLAAA
                     HHYEAAAVSLSHAIVEIGPDQALVTRR"
     gene            complement(388..>1801)
                     /locus_tag="VKJ77_24485"
     CDS             complement(388..>1801)
                     /locus_tag="VKJ77_24485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HMC48498.1"
                     /translation="DYDVGERLGKMGMLSIFARFPVQFATRRKSWFGLGKEREFMLTM
                     PLCVREFFPDTFRTAYRQRARWTLGIGLQGWKQTGWSGSLANRYLLLRDRKGIVTAFV
                     GILAYGLVLQFLLFAIASMSGVLPGLFASPFSDSTWLVFVLWANACALLLRVAQRIFF
                     VTRLYGWEHGLLSVPRMVVGNFINFMAVSRAWKLFIGHLVTGKRLAWDKTMHDFPSED
                     GLGIQRQRLGELLVSWQAIDANKLELALNEGHAREAPLGRVLMAKGWLDEETLAEAIA
                     FQSDLERGSLDPERLPRDAQRLPLADIVRHRVLPQGEDSHGRTILLTANPISEAPLAY
                     LVAQLGQPVTQRIVREGDIATGIRLLRGVDITGPAPIATETATDLRARTLPADGEMDA
                     IVPDAGATYRRGVPLIGDLLIELGHVTRASFEGALQSYRPELHGLIGDYMVAREVISR
                     AALENVIQEQHRLRGDEATR"
BASE COUNT          369 a          596 c          532 g          304 t
ORIGIN      
        1 cacgccgcgt gaccagcgcc tggtccgggc cgatctcgac aatcgcgtgg ctcagcgaaa
       61 cggctgcagc ctcatagtgg tgcgccgccg ccagcgagtt agcgaggagc aggcgcagtg
      121 acaccacctc aggacgctga cggatcgctt cgcgcgcctg tgctgcgctc gtttcgtaat
      181 cgtggcgcgc gaacgaagcg tagccctctt gtgcgacacg atacgcggcg ccggagagcg
      241 gcagttgcaa tgcgccagat acctcggatg aggcagcgtt ggcggccgtg ccgaagctca
      301 gcgcagccgc gacgatcaca ctagccacat gagtgctcga tgcgaaagcc gcggacctgc
      361 gatagttggg tgtcacgtcg agcttcatca gcgagtcgcc tcatcgccgc gcaaacgatg
      421 ttgttcctga atcacgtttt cgagtgcggc gcgcgagata acctcgcgcg ccaccatgta
      481 gtcgccaatc aaaccatgca gttcagggcg atagctctgc agcgcccctt cgaaactggc
      541 gcgcgtcacg tgtccaagtt cgatcagcag atcgccgatc agcggcacgc cgcgccgata
      601 cgtggcccca gcgtcgggca cgatcgcgtc catctcgccg tccgctggca acgtacgggc
      661 tcgcaggtca gtcgcagttt ccgttgcaat gggcgccggc ccggttatat ccacgccgcg
      721 cagcagtcga attccggtgg cgatatcgcc ttcacgcacg atccgctgcg tgacgggctg
      781 cccgagttgc gctaccagat acgcgagcgg cgcttcgctg atcgggtttg cagtcagcag
      841 gatcgtgcgg ccgtgcgaat cctcgccttg cggaagcacg cgatgccgga cgatatccgc
      901 aagcggcaac ctttgggcat cgcgcggcag ccgttcagga tcgagcgacc ctcgctcgag
      961 atccgactgg aacgcgatcg cttcggcgag tgtttcctcg tctagccagc ctttcgccat
     1021 cagcacgcgg ccaagcggcg cttcgcgcgc atggccttcg ttcaacgcaa gttcgagctt
     1081 gtttgcgtcg atcgcctgcc acgacaccag caactccccg agccgctgac gttggatgcc
     1141 gagtccgtct tccgacggaa agtcgtgcat cgtcttgtcc catgcgagcc gcttgccggt
     1201 cacgagatgc ccgataaaca gcttccacgc ccgcgacaca gccatgaaat tgatgaagtt
     1261 gccaacgacc atccgcggca ccgacaacag tccgtgttcc catccataca accgggtgac
     1321 gaaaaagatc cgttgcgcga cgcgcagcag tagcgcgcaa gcgttcgccc acaggacgaa
     1381 aaccagccac gtcgaatcgg aaaatggcga tgcgaacagg cccggcaaca caccggacat
     1441 actggcgatt gcaaacagca agaactggag caccagtccg taagccagga tcccgacaaa
     1501 cgccgtgaca atgcccttgc gatcgcgcaa cagcaaatag cgattcgcaa gcgagccgct
     1561 ccagccggtc tgcttccagc cctgcaggcc aatgccgagg gtccagcggg cacgctgtcg
     1621 atacgcagta cggaatgtat cggggaaaaa ttcccgcacg cacagcggca tggtcagcat
     1681 gaattcgcgc tcctttccca agccgaacca ggactttcgg cgcgtcgcga actgcaccgg
     1741 aaagcgcgcg aaaatcgaca gcatgcccat cttgccaagc cgctcgccga cgtcgtaatc
     1801 c
//
LOCUS       DATGBK010001740         1763 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_251968, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001740 DATGBK010000000
VERSION     DATGBK010001740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251968"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..238)
                     /locus_tag="VKJ77_24490"
     CDS             complement(<1..238)
                     /locus_tag="VKJ77_24490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC48499.1"
                     /translation="MKYQLSALVLLAASTAASAQSSVTIYGRMDGGIEYINHISNGTG
                     GNLSRWNAEGGDWGTSMLGFRGTEDLGGGTSALFD"
     gene            complement(602..>1763)
                     /locus_tag="VKJ77_24495"
     CDS             complement(602..>1763)
                     /locus_tag="VKJ77_24495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HMC48500.1"
                     /translation="LSDFPDVLSYRVARPEQVPELPILTRDPESAMQLIFTSGTTGDP
                     KGIVMTHLRYCATSAVVPAMFGYAAGDRPYSGLSLTHANAQVITLGASLATGMRAVLS
                     RRFTKSRLWDITRKYQCTTFTLLGGMTTAIYSEPARPDDSDNPVRFVISAGMPAAIWT
                     EFEQRFNVRIVEFYGAAEGGLTVKPVGVGPVGSIGKPVPTLKHRIVDDDGRDCAPGLP
                     GELLFRPADGSPFKIEYFGNLEASVKKSKDGWLHMGDVVREDENGWLFFEYRKGGGIR
                     HNGEFINPAPIEKVIAESGAVEDVYVYGVKASSGAPGEKDVVAAVVPKRASGFDPQQV
                     FRLCRAKLEASSVISFLQVVPEIPKTASEKPLERYLLDMFEQRRDSVFTEIS"
BASE COUNT          334 a          562 c          512 g          355 t
ORIGIN      
        1 ggtcgaacag cgcgctggtg ccaccgccca ggtcctcggt ccctctgaag ccgagcatgc
       61 tcgtgcccca gtcgccccct tcagcgttcc agcggctcaa gttgcccccc gtgccgttgg
      121 agatgtgatt gatgtattcg ataccgccgt ccatacggcc atagatcgtc acgctcgact
      181 gtgccgatgc ggccgtgctg gctgcgagca gtacgagcgc gctcaattga tatttcatgt
      241 tgtctcccag gcggattatt ctttcgttct cctttccgtc cacgcccccg ctgcgttggt
      301 agatagcgtt gtcagggacg agtcaaactt ggaccaccgc tcattagcca gctccagctc
      361 tcgttgtcat tcgcgcagat cacggaacac taccatgacg ttccggaaca tggaatgcac
      421 cctgaccagg catattaggc ggcgcagcgg ccacctggta tgacatgttt gttgtagtcg
      481 aatacgctgc ctcgcttgca ggtctgcagg aaccccgacg cccacggtaa tttagaatag
      541 ccctaaaatc gcgatttcgc tctaatgcga aagaacctat tcggctccct cgcgggaacc
      601 gtcatgaaat ctcggtgaaa acgctgtcgc gacgctgttc gaacatgtcg agaaggtagc
      661 gctccagtgg cttttccgag gcggtcttgg gaatctcagg cacgacttgc aagaaagaga
      721 tcaccgaact cgcttcaagc ttcgcgcggc agaggcggaa cacctgctgg gggtcgaagc
      781 cggacgcacg tttcggcaca acggccgcga ccacatcctt ctcacccggc gcaccggatg
      841 acgccttgac gccgtagaca tagacgtcct cgactgcgcc cgactcggca atcaccttct
      901 cgattggcgc gggattgatg aattcaccgt tatgtcggat cccgcctcct ttccggtatt
      961 cgaagaacag ccagccgttc tcgtcttcac gcacaacgtc acccatatgc agccagccgt
     1021 ccttgctttt cttcactgat gcttccagat tgccgaaata ttcgatcttg aacggcgatc
     1081 cgtccgccgg ccggaaaagc aattcgccgg gcagcccagg tgcgcagtcg cggccgtcgt
     1141 cgtcgactat gcgatgcttg agcgtgggca ccggcttgcc gatactgccg actggcccga
     1201 ccccgacggg cttgaccgtg agcccgccct ccgccgcgcc gtagaactcg acgatccgca
     1261 cgttgaagcg ctgctcgaac tcggtccaga tcgccgccgg catccccgcg gatatcacga
     1321 agcgcacggg gttgtccgag tcgtccggcc tggccggctc gctgtagatc gccgtcgtca
     1381 tgccgccgag cagcgtgaag gtggtgcact gatacttgcg cgtgatgtcc cacagccgcg
     1441 acttcgtgaa gcggcgcgac agcacggccc gcattccggt ggcgagcgat gcaccaagcg
     1501 taatgacctg ggcgttggcg tgggtcagcg acagccctga atagggccga tcgccggctg
     1561 cgtagccgaa catcgccggc accactgccg acgtggcgca gtagcgcaga tgcgtcatga
     1621 caatgccttt cggatcgccg gtcgtgccgg acgtgaagat caactgcatc gcgctttcgg
     1681 ggtcgcgagt gagaatgggc aactcgggta cctgctccgg ccgtgccacg cggtaagaca
     1741 gcacatcggg aaagtcagag agt
//
LOCUS       DATGBK010001741         1728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_321237, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001741 DATGBK010000000
VERSION     DATGBK010001741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321237"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..654)
                     /locus_tag="VKJ77_24500"
     CDS             complement(<1..654)
                     /locus_tag="VKJ77_24500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006752204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC48501.1"
                     /translation="MSEPTLTIVVIEDDKQIRRFVRSTLEAQGMTVFEAETGQQGLRE
                     AAFRLPDLIVIDLGLPDTDGIDVIRELRTWTEQPLIVLSARTHEDAKVAALDAGADDY
                     LTKPFGVSELLARIRAQLRRRNRGGQQETPQVRFGPVSVDLSERRVTRDGELIHLTPI
                     EYRLLTTLVRHAGRVITHQQLLREVWGPAYVENQHYLRVYMGHLRHKLELDPAQPVHI
                     "
     gene            complement(651..>1728)
                     /locus_tag="VKJ77_24505"
     CDS             complement(651..>1728)
                     /locus_tag="VKJ77_24505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC48502.1"
                     /translation="TLDAASLDLDIGQWVYDQQKPAGRGTDTLPASNALYLPLKAPMR
                     TRGVLAIITAHAAELAVPEQQRMIDTFASQIALALERVHYVEIAQDALVNMESERMRN
                     SLLSAISHDLRTPLTSIVGFASVLEEQQRIHNGSADTARELVHAIHEEALRMSGLVTN
                     LLDMARLQAGSIRLNRQWLMLEEVVGAALAVCRRTLAGHTVQVRVPADLPLIQLDAVL
                     MERLLANLFENAAKYTPRDSSLSIHAAVEQHSGERYVKVCVDDNGPGLPAGIQQTLFD
                     KFTRGEKESAKPGIGLGLAICRAIVEAHGGKIGAENRVDGEGKVLGARFWFTLPADQT
                     PPFEALPEEDGDGPDTAAAHTDTP"
BASE COUNT          341 a          549 c          500 g          338 t
ORIGIN      
        1 tatatgaacc ggctgcgccg gatcaagctc cagcttgtgg cgaaggtgtc ccatatagac
       61 acgcagataa tgctggttct ccacataagc ggggccccag acttcacgca gcaattgctg
      121 atgcgtgatg actcgcccgg catgacgtac cagcgtagtc agcaacctgt attcgatcgg
      181 cgtgagatga atcagctcac cgtcacgcgt gacacgcctt tcagatagat ccaccgatac
      241 cggcccaaac cgaacctgcg gggtctcctg ctggccaccg cggttacgcc gtcttagctg
      301 cgcacggatt cgcgcgagca actccgacac accgaatggc ttcgtcaaat agtcgtccgc
      361 tcccgcatcc agcgccgcca ccttcgcgtc ttcgtgagtg cgtgccgaga gcacgatcaa
      421 cggttgttcg gtccaggtac gcagttcacg aatcacatcg ataccgtcgg tgtccggcaa
      481 gccaaggtca atgacaataa gatcaggcag ccgaaaagcg gcttcgcgca aaccctgctg
      541 tcccgtttca gcttcgaaga cggtcatgcc ctgcgcttca agcgtgcttc ttacgaaacg
      601 gcgaatctgc ttgtcgtctt ctatgacgac aatggtcagc gtaggctcgc tcatggagta
      661 tccgtatgcg cggcggcagt gtccggcccg tcaccatctt cctcaggaag cgcctcgaag
      721 ggcggcgtct gatcggccgg caacgtgaac cagaaccttg cgcccaacac cttcccttca
      781 ccatccaccc tgttctcagc gccgatcttg ccgccatgcg cctccacgat agcccggcag
      841 atagccaggc ccagaccaat cccgggcttg gcggattcct tctctccacg cgtgaattta
      901 tcgaagagcg tttgttgtat gcccgcaggc agacccgggc cgttgtcgtc gacgcaaacc
      961 ttcacatagc gctcgcccga atgctgttcg accgctgcat ggatagacag cgatgaatcg
     1021 cgcggcgtgt atttcgccgc attctcaaac aggttggcga gcagccgttc catcagaacc
     1081 gcgtccagtt gtatcaacgg aaggtcggcc ggaacgcgaa cctgcaccgt gtgcccggcg
     1141 agcgtgcggc ggcatacggc cagcgcagcg ccaaccacct cttccagcat caaccactgc
     1201 cggttcagac ggatgctgcc cgcctggagc cgggccatgt cgagcagatt cgtcacaagc
     1261 ccgctcatgc gcagtgcttc ctcgtggatt gcgtgaacca gctcgcgcgc ggtgtcggcc
     1321 gagccgttgt gaatgcgctg ctgctcctcc agcaccgaag cgaatccaac gatcgaggtc
     1381 agcggcgtgc gcaggtcgtg cgagatggcc gacaacagcg agttgcgcat gcgctccgac
     1441 tccatgttga ccaacgcatc ctgcgcgatc tcgacgtagt ggacacgttc aagcgcaagc
     1501 gcgatctggg aagcgaacgt gtcgatcatg cgttgctgct cagggaccgc tagctcggct
     1561 gcgtgggcgg tgataatagc caggacaccg cgtgtacgca tgggcgcctt gaggggcaga
     1621 tacagagcat tgctggcggg cagcgtgtcc gtaccgcgtc ccgccggttt ttgttggtcg
     1681 tatacccact ggccgatgtc gaggtcgaga ctggcggcat cgagagta
//
LOCUS       DATGBK010001742         5992 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_113384, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001742 DATGBK010000000
VERSION     DATGBK010001742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5992
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113384"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /locus_tag="VKJ77_24510"
     CDS             <1..518
                     /locus_tag="VKJ77_24510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013088678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC48503.1"
                     /translation="AVLIAGAGTPTVLPERTLIERGYKGAIYQTHGIATPEFIKLGGK
                     DVEGTLFPTQPVVVARTLPSDHPSKKAALAFVDAYEAKYGKGSVTQFAGDAAGVYPRL
                     QDAVGRALKAGQPGTVAFRVALRSELEHAHELVVPNGVVNTSATDHVGLDQRASVMGI
                     IKTGQFTYLSQ"
     gene            666..750
                     /locus_tag="VKJ77_24515"
     tRNA            666..750
                     /locus_tag="VKJ77_24515"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:700..702,aa:Leu,seq:caa)
     gene            1235..2875
                     /locus_tag="VKJ77_24520"
     CDS             1235..2875
                     /locus_tag="VKJ77_24520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012733984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HMC48504.1"
                     /translation="MASSPDSVSMALFCDFENVALGVRDAKYDKFDIMPVLERLLLKG
                     SIVVKKAYCDWDRYKGFKAAMHEASFELIEIPHVRQSGKNSADIRLVVDALDLCYTKS
                     HVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKNSTSDLLVANCDEFIFYDDLVREQ
                     QRSIAKREAREAREARDARDANAAASSAKRSPDDDRQPKQELEARKAKAIAIAVETFD
                     DLASERGESGKIWASVLKSAIKRRKPDFNESYYGFRAFGNLLEEAQVRGLLEVGRDEK
                     SGSFVFRTQSVAATEPVRDIEAPVVPKENRQAGNAGGSSGSGNDRNRRKGRNPRPQVS
                     EPLFDEQRDAQPATPSEAHSELRDEHDRRDGPNPRSQVAEPLFDEPQTAQQPEPQVEA
                     RPRQGRDRNRRNNRNPRPQVHEPLFDVAQEQPPEARAENHAQAADERPFFTLPVKAKE
                     EFVFVERTEETPAQPSEVSKAPSPKPGVARRGRQAAAKKVVTKTQPEAPIESAAAANT
                     IESTDKPAAKKTAAKKAPRKTAPASRRPRKTAAAASEE"
     gene            complement(3161..3469)
                     /locus_tag="VKJ77_24525"
     CDS             complement(3161..3469)
                     /locus_tag="VKJ77_24525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018440366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48505.1"
                     /translation="MKLRLLAHSRTGDKGNTLNVSVICYDAQHYDHLLAHVTPERVKA
                     HLSDVVKGDVRRFELPGIAAFNFVLGRALGGGVTRSLALDAHGKSLSSALMDLEIPEP
                     "
     gene            complement(3471..4841)
                     /locus_tag="VKJ77_24530"
     CDS             complement(3471..4841)
                     /locus_tag="VKJ77_24530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012425991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyclic terpene utilization AtuA family protein"
                     /protein_id="HMC48506.1"
                     /translation="MTAALNAVTQAARVRIGAGAGYSGDRIEPAVELAEHGALDYLVF
                     ECLAERTIALAQQARRANPELGYDPLLEARMRAVLPAAVRNGVKIISNMGAANPLAAA
                     RKTASIAHELRLSGLKIAAVSGDDVLDVVRQGAYRFEESGDSVADYDSRLVSANAYLG
                     AEPIVDALRAGADIVLTGRAADPSLFTAPLIHAFGWAMDDWNTLGQATVVGHLLECAG
                     QITGGYFADPGFKDVPMLARLGFPIGEVDADGSVTITKVAHAGGRVTEATCKEQLLYE
                     IHDPRRYLQPDVVADFTQVRLVEEAPDRVRVSGGCGTSRTGTLKVTVAYVDGFIGEGQ
                     ISYGGPGAVARAKLALEIVRERLEITGVATNELRFDLIGVDSLHGATLGERNAEPYEV
                     RLRVTGRTDSMEQAVRIGNEVETLYTNGPAGGGGVTKTAREVIAVQSVLLPRELVRPS
                     FEMVEA"
     gene            complement(4870..>5992)
                     /locus_tag="VKJ77_24535"
     CDS             complement(4870..>5992)
                     /locus_tag="VKJ77_24535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007733640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015137 - citrate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015746 - citrate transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="citrate:proton symporter"
                     /protein_id="HMC48507.1"
                     /translation="MFVFAILYFGTITDAGTLDPIIDRILRTVGTRPTRIVMGTTLLA
                     LLIHLDGSGAVCFLVTIPAMLPLYDRLKMDRRVLAAAASMAAGINFLPWTGPMIRASA
                     SLHLPISALFNPLIPVQIVGLIFVFGMAWWLGRREEKRLGYTGADGAIPMPKRELTDE
                     QKALRRPKNFWFNIVLTLVVLGTMVVMGEKIPPAIMFMVGLCVALLVNYPNVDMQRQR
                     IDAHARAALMMAGILLAAGVFTGVMQGSGMLKAMAQAAVGFVPPSMATHIPVALGFLS
                     MPLSMLFDPDSFYFGVLPVIAEVAGQLGVPAVHVGQAALLGQMTTGFPVSPLTPATFL
                     VVGLTGIDLADHQKFTFPLLFGASIVMTIACVVLGIFPL"
BASE COUNT         1294 a         1887 c         1761 g         1050 t
ORIGIN      
        1 atgcggtgct gattgcgggc gcgggcacgc cgacggtgtt gccggaacgc acgctgatcg
       61 agcgcggtta taaaggtgcg atttatcaga cgcacggcat tgcgacgccg gagttcatca
      121 agctcggcgg caaggacgtg gaaggcacgc tgttccccac ccagccggtc gtggtcgcgc
      181 ggacattgcc ctctgatcat ccgtcgaaga aagcggcgct ggcttttgtt gacgcgtatg
      241 aggcgaagta cggcaagggt tcggtcacgc agttcgccgg cgatgcggcc ggggtctatc
      301 cgcggctgca ggatgcggtc ggacgcgcgc tgaaggccgg gcaaccgggg acggtggcgt
      361 ttcgtgtggc gttgcgttcg gagctcgagc acgctcatga attggtcgtg cctaacggcg
      421 tggtcaacac cagcgccacc gatcacgtcg ggttggatca gcgagcaagc gtaatgggca
      481 tcatcaagac cggccagttc acgtatttga gccagtgagt gggctgatag tgggccgatg
      541 aacgcggttg tctgctgcgg gtgtccaagg gcttgcccgc ggaaacgatt ttcggcataa
      601 tcgctgactt gccggttggt gtgggaattt ttccgcctcc cagtcggctg gttcaaatgc
      661 tgtttgcccg ggtggtgaaa ttggtagacg caggggactc aaaatccccc gccgcaaggc
      721 gtgccggttc gattccggcc ccgggcacca tttccgaaaa gccgtttctg cgtatgcaga
      781 gacggctttt tcgcatttag cgcgcaggat caatgatcgg gaaaggcagc gggcagaccg
      841 gggaatccat cgatcggaca aacggtagtc cagtcaccct cgacccaggc ggctcccgac
      901 agccgcgatc cgcccgcaac gcccggcaag attgctgatg gtgccgcttt ggcgggccgc
      961 tccaaactcg atcaggcacg tctggagatc gctttggctg aattcgaacc actgcgaatt
     1021 cgcgtgcaag cggcatagcc gtgcatcaca ggaaccccga tccgaacaca tctgtttctt
     1081 cgatatgctc gtgccgcggc acgtgaccaa aaggctctga ctcgcccccg cccgtcacga
     1141 ttgtttcctt actctcaaac cccggcgcac aaacagatat catgtgcgct cgttaatact
     1201 gccgtgcaca cccggcattc ctgctggagt ttctatggcc tcatcccctg atagcgtcag
     1261 catggcgttg ttttgcgact tcgaaaacgt cgccctcggc gtgcgcgacg cgaaatacga
     1321 caagttcgac atcatgccgg tgctcgaacg gttgctgctc aaaggcagca tcgtggtgaa
     1381 aaaggcttac tgcgactggg atcgctacaa aggttttaaa gccgccatgc acgaagcgag
     1441 tttcgagctg atcgaaattc cgcacgtgcg tcagtcgggc aagaattcag cggatatccg
     1501 gctcgtcgtc gacgcgctcg atctctgcta cacgaagtcc cacgtcgata cgttcgtcat
     1561 catcagcggc gattcggact tctcgccgct cgtgtcgaag ttgcgcgaga acgcgaagaa
     1621 agtgatcggc gtgggcgtga aaaactcgac ctccgacctg ctcgtcgcga actgcgatga
     1681 attcattttc tacgatgacc tcgtacgcga gcagcaacgc agcatcgcga aacgtgaagc
     1741 gcgcgaggct cgtgaagcac gcgacgcacg agatgcgaac gcggcggcgt cgtcggcgaa
     1801 gcgctcgcct gacgacgacc gccagccgaa gcaggaactt gaagcacgca aggccaaggc
     1861 catcgcgatt gcggtggaaa cgttcgatga cctcgcctcc gagcgcggcg agagcggcaa
     1921 gatctgggcg tcggtgctca agagcgcgat caagcggcgg aagccggatt tcaacgagtc
     1981 gtactacggc tttcgcgcgt tcggcaatct gctagaggaa gcgcaggtgc gcggtctgct
     2041 cgaagtggga cgcgacgaaa agtcgggttc atttgttttt cgcacacagt cagtggctgc
     2101 gacagaaccg gtaagggaca tcgaagcgcc tgtcgtgccg aaggaaaatc ggcaagcggg
     2161 gaatgcgggc ggctcgagtg gctcgggtaa tgaccggaat cggaggaaag gccgcaaccc
     2221 gcgtccgcaa gtttccgaac cgctcttcga tgaacagcgc gacgcgcaac cggcgacgcc
     2281 ttcggaagct cactccgaat tgcgtgacga gcatgatcgc agagacggac cgaacccacg
     2341 atcgcaggtc gcggaaccgc tcttcgacga accgcaaacc gcgcagcaac ctgaaccgca
     2401 agtggaagcg cgaccgagac agggccgcga ccgcaatcgt cgaaacaatc ggaacccaag
     2461 gccgcaggtt cacgaaccgc tgttcgatgt agcacaggaa cagccacccg aagctcgtgc
     2521 ggaaaatcac gcgcaagccg cagacgagcg accattcttc acgctaccgg tgaaggctaa
     2581 ggaagaattc gtcttcgtgg agcgcacgga agaaacaccc gcgcaaccca gcgaagtaag
     2641 taaagcaccg tcacctaagc ccggtgtggc gcgacgtgga cgtcaagcag cggcgaagaa
     2701 agtcgtgaca aagacgcagc cagaagcgcc aattgagagc gcagctgcag ccaacactat
     2761 tgagagcaca gacaagcccg cggcaaagaa aacggcagcg aaaaaggccc cgcgtaaaac
     2821 cgcaccggct agccggcgtc cgcgaaagac agcggccgca gcgagcgaag agtgaacgtt
     2881 tgaagacggc gcatcgccgt gacgtggttg tcatggcgat gccggtttat cgggaaattg
     2941 cttgcggtta aacggccgaa gcgctcgagc gacagctagg gcgttgaggg ccgatttgag
     3001 taggagaccg ggtcaccccc gtcgccctgc tttgccttcg gctttcttca acttcgcagt
     3061 cgcccacgac accgttgccg ttccgctaac ctctgacggg ccgcccggct tgccacagcc
     3121 ggcctcatcc gcttcggcct ccacccgaca actcatcgcc tcaaggctct ggaatctcca
     3181 gatccatcaa cgccgaactc agcgattttc catgcgcatc gagcgcgagt gatcgcgtca
     3241 cgccgccacc gagcgcgcgt ccgagtacga aattaaacgc cgctattccc ggcaattcga
     3301 agcgcctcac atcgcccttc acgacatcgc tcagatgcgc cttcacgcgc tccggcgtga
     3361 catgcgcgag caaatgatcg taatgctgcg cgtcgtaaca gatcaccgat acattcaacg
     3421 tattgccctt atcgccggtt cgggagtgag ccagtagacg tagcttcata tcaggcctcc
     3481 accatttcga acgatggccg cacgagttct cgcggcagca aaaccgactg caccgcgatc
     3541 acctcacgag cagtctttgt taccccgccg ccgcctgccg gaccattggt atagagcgtc
     3601 tcgacctcat tgccgatacg aaccgcctgc tccatcgaat cggtacgacc ggttacgcgc
     3661 aagcgaacct catacggctc cgcgttacgt tcaccaagcg tcgcaccatg caatgaatcg
     3721 acaccaatca aatcgaagcg cagttcattc gtcgcgacac ccgttatctc caaccgttca
     3781 cgcacaatct cgagggccag tttcgcccgt gcgaccgcgc ccggaccgcc atacgaaatc
     3841 tgcccctcgc cgataaaccc gtccacgtaa gccacggtca ccttcaacgt cccggtcctt
     3901 gatgtcccac agccaccgct cacccttacg cgatccggcg cttcttccac cagacgaacc
     3961 tgcgtgaagt cggcgactac atcgggctgc agataccggc gcggatcgtg gatctcgtac
     4021 agcagttgct ccttgcacgt ggcctccgtc acacggccgc cggcatgcgc gaccttggta
     4081 atcgtgacag agccatcggc gtcgacctcg cctatcggga agccgaggcg cgcgagcatg
     4141 ggcacatcct tgaaaccggg gtcggcgaaa taaccgccgg tgatctgtcc ggcgcattcg
     4201 agcagatgtc ccactaccgt cgcctgaccg agcgtgttcc aatcgtccat cgcccagccg
     4261 aacgcatgga tcagcggtgc cgtgaacaac gacggatcgg ccgcgcgtcc ggtaagcacg
     4321 atatcggcgc cagcccgcaa cgcatcgaca atcggctctg cacccagata cgcattcgcc
     4381 gaaacgagcc tgctgtcgta gtcggcaacg ctgtcgcccg attcctcgaa tcgatacgct
     4441 ccttgcctca cgacatcgag cacatcgtcg ccgctgaccg cagcgatttt cagcccgctc
     4501 aacctcagct catgcgcgat cgacgccgtc ttgcgcgccg ccgccagcgg attcgccgcg
     4561 cccatgttcg agataatctt cacaccgttg cgcacggcgg ccggcaacac cgcgcgcatc
     4621 ctggcttcga gcaacgggtc gtaacccagc tccggatttg ctcgccgcgc ctgttgtgca
     4681 agtgcgatgg ttcgctctgc caggcactcg aacacgagat agtcgagcgc tccgtgttcg
     4741 gccagttcga ccgcgggctc gatgcggtcg cccgagtaac ccgctcccgc gccgatccgc
     4801 acgcgggcgg cttgagtcac agcgttgagt gcagcagtca tacccatttc cttgcgtaaa
     4861 gagacgcgct caaagaggaa agatgcccag cacgacgcac gcgatcgtca tcacgatcga
     4921 tgcgccaaac aacagcggaa acgtgaattt ctgatggtcg gcgagatcga tgccggtcag
     4981 tccgacgacc aggaatgtcg cgggcgtgag cgggctgacc gggaaccccg tcgtcatctg
     5041 cccaagcaat gctgcctggc cgacatgcac agcaggcacg ccaagctgcc ccgcgacttc
     5101 cgcgatcacg ggcagcacgc cgaagtaaaa cgagtcggga tcgaagagca tgctgagcgg
     5161 catcgataag aaacccagcg caacggggat gtgcgttgcc atcgaaggcg gcacgaaacc
     5221 aacggcggct tgcgccatcg ccttgagcat gccgctgcct tgcatcacgc ccgtgaacac
     5281 accggcggcc agcaggatgc cggccatcat cagcgcagcg cgtgcgtgcg catcaatgcg
     5341 ctgacgctgc atgtccacgt tcggataatt gacgagcaac gcgacgcaca gcccgaccat
     5401 gaacatgatc gccggcggaa tcttctcgcc catcaccacc atcgtgccga gcaccaccag
     5461 cgtcagcacg atgttgaacc aaaaattctt cggtcgacgc agcgctttct gttcgtcggt
     5521 gagttcgcgt tttggcatag gaatcgcgcc gtcggcaccc gtgtatccca accgtttctc
     5581 ttcgcgccgg cccagccacc atgccatgcc gaatacaaat ataaggccca cgatctgcac
     5641 cggaatcaac ggattgaata gcgcggatat cggcaaatgc agcgatgccg acgcgcggat
     5701 catcggcccg gtccatggca ggaaattgat gcccgccgcc atcgacgctg ccgcggccaa
     5761 tacgcgccga tccatcttga gacggtcgta aagcggcaac atcgcgggga tagtgacgag
     5821 gaagcaaaca gcccccgagc cgtcgaggtg gatcagcagc gcgagcaaag ttgtacccat
     5881 cacgatgcgc gtcggccgcg tgccgaccgt gcgcaaaatg cgatcgatga tcggatcaag
     5941 cgtaccggcg tcggtgatgg tgccgaagta caggatcgcg aagacgaaca tg
//
LOCUS       DATGBK010001743         1741 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_159404, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001743 DATGBK010000000
VERSION     DATGBK010001743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159404"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /gene="rplX"
                     /locus_tag="VKJ77_24540"
     CDS             complement(<1..212)
                     /gene="rplX"
                     /locus_tag="VKJ77_24540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006998477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HMC48508.1"
                     /translation="MNRIRKGDHVIVITDKCKGQKGEVLRMAEDRVVVQNINLVKRHT
                     KPNPQANQPGGIVEREAPIHISNVML"
     gene            complement(378..746)
                     /gene="rplN"
                     /locus_tag="VKJ77_24545"
     CDS             complement(378..746)
                     /gene="rplN"
                     /locus_tag="VKJ77_24545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009124801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HMC48509.1"
                     /translation="MIQMQSVLDVADNTGARSVMCIKVLGGSKRRYAGIGDVIKVSIR
                     EAIPRGKVKKGEVYDAVVVRTKKGVRRADGSLIRFDGNAAVLLNNKIEPIGTRIFGPV
                     TRELRSERFMKIVSLAPEVL"
     gene            complement(864..1151)
                     /gene="rpsQ"
                     /locus_tag="VKJ77_24550"
     CDS             complement(864..1151)
                     /gene="rpsQ"
                     /locus_tag="VKJ77_24550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HMC48510.1"
                     /translation="MNAAAPQAAIAAKNQRTLVGRVVSNKMQKTVVVLVERRVKHKAF
                     GKIITRSSKYHAHATEQFKQGDLVEIAECRPISKTKAWTVTRLVEKSKLVE"
     gene            complement(1148..1339)
                     /gene="rpmC"
                     /locus_tag="VKJ77_24555"
     CDS             complement(1148..1339)
                     /gene="rpmC"
                     /locus_tag="VKJ77_24555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012251762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HMC48511.1"
                     /translation="MKASDLRAKNGDDLQKELNELLKAQFGMRMQHATQQLANTSQIK
                     KVRRDIARVRTVIKEKAAK"
     gene            complement(1351..>1741)
                     /gene="rplP"
                     /locus_tag="VKJ77_24560"
     CDS             complement(1351..>1741)
                     /gene="rplP"
                     /locus_tag="VKJ77_24560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011901907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HMC48512.1"
                     /translation="YRKQQKGRNTGIATRGNKVSFGEYGLKALGRGRLTARQLEAARR
                     TLSRHIKRGGRVWIRVFPDKPISRKPAEVRMGNGKGNPEYFVCEIQPGKIIFEMDGVD
                     AALAKEAFALAAAKLPFRTTSVHRMLG"
BASE COUNT          286 a          562 c          496 g          397 t
ORIGIN      
        1 aacagcatca cgttggagat atggatcggc gcctcgcgct cgacgatacc gcccggctgg
       61 ttggcctgcg gattcggctt ggtgtggcgt ttgaccagat tgatgttctg caccacgacg
      121 cgatcttccg ccatgcgcag cacttcgcct ttctggccct tgcatttgtc ggtgatcacg
      181 atgacgtggt cacctttgcg gatacgattc atgattcaac tctctttatc aaatgagcgc
      241 gaaagcttcg cgttcactaa cctcggcaat acttccacaa acctgccctc gcttcgctcg
      301 ggcgccccct taactcaagg gggctgatgt caaaatccgc cttcgctgcg ctcaggcgag
      361 ttcaccaata tcctgtctta caaaacttcg ggagcgagcg aaacgatctt catgaagcgt
      421 tcgctgcgca gttcgcgcgt gaccggtccg aaaatacgcg taccgatcgg ctcaatcttg
      481 ttgttcagca gcacggcggc gttgccgtcg aagcggatca gcgaaccgtc ggcccggcgc
      541 acgcctttct tggtgcgcac gacaaccgcg tcgtagacct cgcccttctt caccttgccg
      601 cgcggaattg cctcgcggat cgacaccttg atcacatcac cgatgccggc atagcggcgc
      661 ttggagccgc ccagcacctt gatgcacatg accgagcgcg cgccggtgtt atcggcgaca
      721 tccagcactg actgcatctg aatcatggtt ctttcactcc atccaacttg tgtgtccagg
      781 acacacagtt ttggaccccg tacggggcat cgttacgcaa aagcggacgc ggattctagc
      841 ctgaaatccg catcttaggc aacttattcg accagcttgg acttctccac caggcgcgtc
      901 accgtccagg ccttggtctt ggaaatcggc cggcactcgg caatttcgac caggtcgccc
      961 tgcttgaact gttcggtggc gtgcgcgtgg tacttgctcg agcgcgtgat gatcttgccg
     1021 aaggccttgt gcttcacacg gcgctcgacc agtaccacca cggtcttctg catcttgttg
     1081 ctgaccacgc gaccgaccag cgtgcgctgg ttcttggcgg caatcgccgc ctgcggagct
     1141 gctgcgttca ttttgcggcc ttctctttga tgacggtgcg cacgcgcgcg atgtcgcggc
     1201 gcaccttctt gatctggctg gtattggcca gctgttgtgt cgcgtgctgc atgcgcatcc
     1261 cgaactgcgc cttcagcagc tcgttcagct ccttctgcag atcgtcgccg ttcttggcgc
     1321 gcaggtcact cgctttcata ggcatccctt ctatcccagc atccggtgca cggacgtggt
     1381 gcggaacggc agcttggcgg cggcaagcgc gaacgcttcc ttcgccagcg ccgcgtccac
     1441 gccgtccatt tcgaaaatga tcttgcccgg ctggatttcg cagacgaaat attccgggtt
     1501 gcccttgccg ttgcccatgc gcacttcggc gggcttgcgc gatatcggct tgtccgggaa
     1561 cacgcggatc cagacgcggc cgccgcgctt gatgtggcgc gacagcgtgc gccgcgcggc
     1621 ctcgagctgg cgcgcggtca gacgcccgcg gccgagcgcc ttcaggccgt actcgccgaa
     1681 ggaaaccttg ttgccgcgcg tggcgatgcc ggtattgcgg cccttctgct gcttgcggta
     1741 c
//
LOCUS       DATGBK010001744         1824 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_136383, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001744 DATGBK010000000
VERSION     DATGBK010001744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136383"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            191..430
                     /locus_tag="VKJ77_24565"
     CDS             191..430
                     /locus_tag="VKJ77_24565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48513.1"
                     /translation="MPASVADRQLDHIERMVRSVVRASTAGPVHGMDQGYWESRIHAL
                     VNENNLVAVQQHRVQRLLQDLAKRARPNVLKRTAA"
     gene            complement(511..1425)
                     /locus_tag="VKJ77_24570"
     CDS             complement(511..1425)
                     /locus_tag="VKJ77_24570"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48514.1"
                     /translation="MDSVEADQAAAFLAVVESGSFSAAGRKLGRDGSVMSRRVAALEA
                     RLGIRLLERSTRRVSPTEAGIRFRDRMRNAMEMVRAAEDEARALAVSPTGLLRLTLPV
                     TFGRMWIAPRMPEFLARYPSIRVEALYADRYTDLIDEGFDAGVRVGELNDSRLIGRRL
                     AMSRRLLCAAPSYLDRRSALKEPDDLLRHDCICFTRLTTHPSWHLHRDGKNRTVRIRG
                     RMETDDAEAVVQAALAGTGIIMAADWLVARELADGRLVAVLRDWTVGGESGVSVVRPS
                     VQHEPAKTRAFVDWVIGIFADRPWQEPR"
     gene            1529..>1824
                     /locus_tag="VKJ77_24575"
     CDS             1529..>1824
                     /locus_tag="VKJ77_24575"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HMC48515.1"
                     /translation="MRAFHLSAASLDALKRVEVPTPRPKPDEVLIRLRAASLNYLDLM
                     VAWGRFGDGSMPFIPGTDGAGEIVDTGSGVEGWKAGDRVVPGLMVDWSAGPLTTA"
BASE COUNT          362 a          581 c          568 g          313 t
ORIGIN      
        1 aacggggaac gataccgcca cgctcataca gcgccatttg catttgcttt ggcaggacga
       61 gcggtctgat gggcgatgcc cggacaaaat aatcgcagca cgcgtcctga gacaactcag
      121 cgaagcacga cgagatatca gcaaaatgag cgctttaaag aaagcaccgt cgcctaatcc
      181 cggcaacttg atgcccgcga gtgtagcgga tcgccagctt gatcacatcg agcgcatggt
      241 caggtcggtc gtgcgcgcca gcacggctgg acccgtccac ggcatggacc aggggtactg
      301 ggaaagccgg attcacgccc tggtcaatga gaacaatctg gtggccgtgc aacaacaccg
      361 ggtgcagcgc ttgttacagg atctggccaa gcgcgcacgg ccgaacgtac tgaaacgaac
      421 ggcagcgtga accgggatgg ggcgagtgga ggtctgagga accagcgttg agcgcgggca
      481 cgagttgcaa cctgcatggc ctgcagtcgg ctaccgtggc tcctgccacg gccggtcggc
      541 gaagatcccg atcacccaat ccacaaacgc gcgggtcttg gccggctcat gttgaacgga
      601 gggccggacc acgctgaccc ccgactctcc gccgaccgtc cagtccctca gtaccgccac
      661 gagccggccg tcggccagtt cgcgcgccac cagccagtcg gccgccatga tgatgcccgt
      721 gcccgctagc gccgcctgga caacggcttc ggcgtcgtct gtttccatcc gtcccctgat
      781 cctgaccgtg cgatttttgc catcgcgatg cagatgccag gacggatgtg tcgtcagccg
      841 cgtgaagcaa atgcagtcgt gacgcagcag gtcgtccggc tcttttaacg ctgaccgccg
      901 gtccagatac gaaggcgccg cgcaaagaag ccggcggctc atggcaaggc ggcggccgat
      961 cagccggctg tcattgagct cgcccacccg gactccggca tcgaatcctt cgtctatcag
     1021 gtcggtgtat ctatcggcgt acagggcctc gacgcgaatc gatggatacc gcgcaagaaa
     1081 ctccggcatc cgcggcgcaa tccacatgcg cccgaacgtg acgggtagcg taagccgcag
     1141 aaggccggtg ggcgaaacgg ccagcgcgcg cgcctcgtcc tcggcggcac gcaccatctc
     1201 cattgcattg cgcatccggt cccggaaacg gataccggct tcagtcggcg atacacggcg
     1261 cgtcgagcgc tcgagcagcc ggatccccaa acgcgcctcg agtgccgcaa cgcgtcgcga
     1321 catgaccgag ccatcgcgac ccagtttgcg gccggcagcc gaaaagctcc ccgattcgac
     1381 aacagccaga aacgccgctg cctggtctgc ttccacgcta tccattgatg caccacacgc
     1441 agtagtgtta tgttttcgag atgaattata gcgtcagggc atggttacta ttttctccat
     1501 tgcatcacgg ttcttattgg agattgccat gcgtgccttc cacctgagcg ctgcctcact
     1561 cgacgcttta aagcgtgtcg aagtcccgac accccggccg aagcctgatg aggtactgat
     1621 ccgcctgcgc gcggcgagcc tgaactatct cgacctgatg gtggcatggg gccggttcgg
     1681 cgacgggagc atgccgttca ttcccgggac ggacggcgcg ggcgagatcg tggataccgg
     1741 cagcggcgtg gaggggtgga aagcgggcga cagagttgtc cccggcctga tggtcgactg
     1801 gtcggcgggg ccgttaacca cggc
//
LOCUS       DATGBK010001745         1541 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_206163, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001745 DATGBK010000000
VERSION     DATGBK010001745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206163"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VKJ77_24580"
     CDS             <1..187
                     /locus_tag="VKJ77_24580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HMC48516.1"
                     /translation="PKFFSQLPHALEPILHSGILLASVSAVLLNIVFNGVKKERDATC
                     AIHRAGRDFDGRAKVKH"
     gene            complement(286..>1541)
                     /locus_tag="VKJ77_24585"
     CDS             complement(286..>1541)
                     /locus_tag="VKJ77_24585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013589496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC48517.1"
                     /translation="SLFNQTISNQYSVGVNASWEIDFFGRIQSLKDQALEQYFALAET
                     RKAAEISLVSQVADQYLTMLSDDDQLTVTRNTLKTAQESYRITKLQFDNGVGTELDVT
                     QSEGILQQAAANLQSQLRLRAQAENALVLLIGEPLPADLAPGLPLDSQNLLADIPAGL
                     PSDLLVRRPDIASAEHSLLAANANIGAARAAFFPKVSLTGSFGTLAPSLGTLFKPGSA
                     AWSFAPQISIPIFEGGTNLANLDLAQIQKRIEIANYEKAIQTAFREVADGLAARGTYD
                     EQIKALELFVKSQARGLELSDMRYRNGVDNYLSVLTAQTNLYTAQQLLITARLNRVTN
                     LVDLYRELGGGWVEHAGDQPRPSDAMPNYRDIGTPTAAAPAAASGTTVSSASAGPAKL
                     VPVQHLMPAAKPQVDADGKAVGSAG"
BASE COUNT          324 a          483 c          443 g          291 t
ORIGIN      
        1 accgaagttc ttctcgcagt taccgcatgc gctggaaccc attcttcata gcgggatctt
       61 gctggcgtcg gtgtcggcgg tgctgttgaa tatcgtcttc aacggagtga agaaagaacg
      121 cgatgcgacc tgcgcgatcc atcgtgcggg aagggatttt gatgggaggg cgaaggtgaa
      181 gcactgaggg agttcgcgca gaactgagag ataaaaaaag ccgcaataaa aaaaaccgca
      241 gccccaaaag gctgcggttt ttgaacatct gaagcacgta gaaccttacc ctgccgatcc
      301 cactgctttc ccgtcggcat caacctgcgg ctttgcagcc ggcatcagat gctgcaccgg
      361 caccagcttc gcaggacctg ccgaagccga gctgaccgtc gtgcctgaag cagcagcagg
      421 agcagccgcc gtcggcgtac cgatatcgcg gtaattcggc atggcatccg aaggacgtgg
      481 ctgatcgcct gcatgctcga cccagccgcc gcccagctca cgatacaaat cgacgagatt
      541 cgtcacccgg ttcagccgcg ccgtgatcag caactgctgc gcggtgtaca ggttcgtctg
      601 ggccgtcagc acgctcagat agttgtccac gccgttgcga tatcgcatat ccgacagctc
      661 cagcccgcga gcctgcgact tcacaaacaa ctcaagcgcc ttgatctgct cgtcgtaagt
      721 gccgcgcgcg gccagcccgt ccgccacttc gcggaacgcc gtctggatcg ccttctcgta
      781 attcgcgatc tcgatgcgct tctggatctg agccagatcc aggttggcca ggttcgtgcc
      841 accctcgaaa atcggaatcg agatttgcgg tgcgaacgac cacgccgccg aacccggctt
      901 gaacaacgtg ccaagcgaag gcgccaacgt cccgaagcta cccgtcagcg aaaccttcgg
      961 gaaaaacgcc gcacgcgccg caccgatgtt cgcgttcgcc gcgagcagcg aatgctccgc
     1021 cgacgcaata tccggacgcc gcacgagcag atccgaaggc agtccggcgg ggatatcggc
     1081 gagcaggttc tggctgtcga gcggcaggcc cggcgccaaa tctgccggca gcggctctcc
     1141 gatcaacaac accagcgcat tctcggcctg cgcccgcaga cgcaattgcg actgaaggtt
     1201 ggcagcggcc tgttgcagga tgccttcaga ctgagtcacg tcgagttcgg tgcctacgcc
     1261 gttatcgaat tgcagcttcg tgatccgata cgactcctgc gccgttttca acgtattgcg
     1321 cgtgacggtg agctggtcgt cgtccgagag catcgtcaaa tactggtcgg cgacttgcga
     1381 caccagcgag atttccgccg ccttgcgtgt ttccgcgagc gcgaaatact gctcgagcgc
     1441 ctggtccttc aagctctgga tccgcccgaa gaagtcgatt tcccaggacg cattcacccc
     1501 gaccgaatac tggttcgaga tcgtctggtt aaacaacgac a
//
LOCUS       DATGBK010001746         1659 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_20414, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001746 DATGBK010000000
VERSION     DATGBK010001746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20414"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..746)
                     /locus_tag="VKJ77_24590"
     CDS             complement(<1..746)
                     /locus_tag="VKJ77_24590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48518.1"
                     /translation="MMFRRATTRVLLLLCAMYFITYIDRVNVSTAASQFGAELHLSHV
                     QIGFVFSAFAYPYLVFQIIGGWVGDRFGPRRTLAVCAVIWAAATIMTGLAGGFVSLII
                     ARLLLGLGEGATFPTATRAMSNWMPADKRGFAQGTTHAASRIGNAVAPPLIVWLMIAT
                     SWRGAFIVTGVISFLWAIVWIFYFRDNPRDHKSITADECATLSSFSGVKQRVPVPWRA
                     LLGRMAPVTAVYFCYGWVLWLFLGWIPQYFL"
     gene            complement(950..>1659)
                     /locus_tag="VKJ77_24595"
     CDS             complement(950..>1659)
                     /locus_tag="VKJ77_24595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012078300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HMC48519.1"
                     /translation="NNYMEPDNARAAKRVLEAAGYTVHLNVKAGERPLCCGRTFLSAG
                     RVDEAKAEARRTLDTLRPYIERGVPVVGLEPSCLLSFRDEFLDYGYGDEARKLAKSSF
                     LFEEFLVHEKEAGRLRLSLKPLAQPKALVHGHCHQKAFDVFRPVQAVLGWIPQLEVSV
                     VESSCCGMAGSFGYEAEHYEASKAMAELSLLPAVRKAQDAVIVADGTSCRHQIADGAD
                     VKALHVAQVLAAALRDY"
BASE COUNT          381 a          515 c          476 g          287 t
ORIGIN      
        1 agaaagtact gcggaatcca gccgaggaag agccacaaca cccagccgta gcagaagtac
       61 acggcggtca ccggcgccat ccgtcccaac aatgcacgcc atggaacagg cacgcgctgc
      121 ttgaccccgg agaacgacga aagcgtggcg cactcatcgg cggtaatgct cttatggtcg
      181 cgggggttat cgcggaaata gaagatccag acgatcgccc acagaaaact gatgaccccc
      241 gtcacaataa atgcaccgcg ccagctcgtt gcaatcatca accagacgat caacggcggc
      301 gctaccgcat taccaatgcg cgacgcagca tgcgtggtcc cttgtgcgaa accgcgtttg
      361 tcagccggca tccagttcga catggcgcgg gtggccgtcg ggaacgttgc cccttcgccc
      421 aacccaagca acaagcgcgc aatgatcagc gatacaaacc cgccggcgag cccggtcatg
      481 atcgtggcgg ccgcccagat cacggcgcaa acggcaagcg tgcggcgcgg tccgaagcgg
      541 tcccccaccc atccgccaat gatctggaac acgagatacg gataggcaaa tgcggaaaaa
      601 acaaagccga tctggacatg cgacaagtgc agttccgcgc cgaactgcga ggcagcggta
      661 ctgacgttga cacggtcaat ataggtgatg aaatacattg cgcacagcag caacagaacg
      721 cgcgtcgtag ctcgacggaa catcatcgtc tccttgagta aggcgtgctt catcaaggcg
      781 cccacgggcg ccagaagcga actgcatccc gaactttcga taaggcttta ccggatgggc
      841 gttaaagcga ggtgcgaatc ctgggtttgc gcggtcgtgc catgctggtc tccaatgcgc
      901 ggaacatgac gcggtccgct gtttatgtga acccctgctg ctgtgctgat taataatccc
      961 tgagcgccgc agccagaacc tgcgcgacat gcagcgcttt tacatcggcc ccatcggcga
     1021 tctggtgacg gcagctggtg ccatcggcga cgatcactgc atcctgtgcc ttgcgcacgg
     1081 cgggtagcaa cgacaactcc gccatcgctt tcgatgcttc gtagtgctcg gcttcgtaac
     1141 caaaactccc ggccatgccg caacacgacg attcaaccac cgagacctcc agctgaggaa
     1201 tccagccgag tacagcttgc acgggacgaa acacgtcgaa ggccttttga tggcagtgac
     1261 cgtgaaccag tgccttcggc tgagcgaggg gtttcagcga aagccgcagg cgtccggcct
     1321 ctttctcgtg aaccaggaac tcctcgaaca ggaacgacga cttcgcgagc ttgcgcgctt
     1381 catcgccgta accgtagtcg aggaattcat cgcggaatga aagcaggcac gacggttcaa
     1441 ggccgacgac cggcacgccg cgttctatat aagggcgcaa tgtgtccagc gtgcggcggg
     1501 cttcagcctt ggcttcatcg acccgtcccg cggataaaaa cgtacgtccg caacacaacg
     1561 gccgctcgcc cgctttgacg ttcagatgaa ccgtgtaccc cgccgcctcg agcacgcgct
     1621 tcgcggcgcg ggcgttgtcg ggttccatat agttgttga
//
LOCUS       DATGBK010001747         1943 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_136419, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001747 DATGBK010000000
VERSION     DATGBK010001747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136419"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            193..1143
                     /locus_tag="VKJ77_24600"
     CDS             193..1143
                     /locus_tag="VKJ77_24600"
                     /EC_number="1.8.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011491568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0019645 - anaerobic electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DmsC/YnfH family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HMC48520.1"
                     /translation="MNPAFSVVFLTTLSGAAQGLLIALVGVEASAYLGLLAAPPTAFY
                     VVGAGVSVALGGLGLIASFFHLGHPERAWRAVAMWRTSWLSRECLCLPVFLACAFFYG
                     VAHWFGSSWSLALGALGVLASAALFVCSAMIYACLRFLQEWATPLTLANFALLGCASG
                     FTLVTALSGWFAPPLTEGLAACACALTLAGCASRSASLVRNARLRPKSTVQSATGIKN
                     AKVVQVSRGFTAGAFNLREFFHGKSAGTLRGVKWGFLVTAFVAPVVLMALGAGVHSIG
                     ISAVLLAAACIVQYAGLVAERWFFFAEAKHPQNLYYARVG"
     gene            1593..>1943
                     /locus_tag="VKJ77_24605"
     CDS             1593..>1943
                     /locus_tag="VKJ77_24605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48521.1"
                     /translation="MFDHRNFYDESTGAGMTRSGKLESKLFNVRRAAGTATLALLLLG
                     GGISGSAQAASFHCGKRVSSSEKLVCNDPELSSLDDKLAISYKRAKDVTPDTAAFEDD
                     RVKQWQWRQHNCKDK"
BASE COUNT          352 a          559 c          612 g          420 t
ORIGIN      
        1 gcccgaatgg gatacgaagc cagcgaacca ttatctgccg cgcaagacga cttcggcttc
       61 ggggtgtggg gagggcagtt gttcgtgcaa gacagattcg gctgagtcca tgccgcaaac
      121 cgtggacgcg caacttgagc gtgggcaatt gcatcttgcg tcggttgcga cgcgcatcta
      181 aaggactccg caatgaaccc cgctttctca gtcgtattcc tcaccacgct aagcggcgcc
      241 gcgcagggcc tgctgatcgc gctcgtcggc gtagaggcgt cagcatatct cggccttctc
      301 gcagcgccgc caacggcgtt ttatgtcgtg ggcgcggggg tgtcggtcgc actcggtggg
      361 ctcggtctca tcgcctcgtt cttccatctc gggcatcctg aacgcgcgtg gcgggcggtc
      421 gccatgtggc gcacctcgtg gttgtcgcgt gaatgcctgt gtctgccggt gtttctcgcc
      481 tgtgcgtttt tctacggtgt cgcgcactgg ttcggctcgt catggtcgct cgcgttgggc
      541 gcgcttggtg tcctggcgag cgccgcgctg ttcgtttgct cggccatgat ctatgcatgc
      601 ctgcgctttc tccaggaatg ggccacgccg ctcacactag ccaacttcgc cctgcttggc
      661 tgcgcgtccg ggttcacgct ggtcaccgca ttgagtgggt ggttcgcgcc tccactcact
      721 gaaggcctcg ccgcctgcgc gtgcgcgctg acgcttgccg gttgcgcgag caggtcggca
      781 tcgctcgtgc gcaatgcacg actgcggccc aagtccaccg tgcagagcgc gaccggtatc
      841 aagaacgcga aggtggtgca ggtatcgcgt ggtttcacgg ccggcgcatt caatctgcgc
      901 gagttctttc acggtaaatc ggcaggtacg ctgcgcgggg tcaagtgggg attccttgtg
      961 acggcgttcg tggcacccgt cgtgctgatg gcgttgggcg caggcgtgca ttcgatcggc
     1021 atctcggccg tcctgctggc cgcagcgtgt atcgtgcagt acgcaggcct ggtggcggaa
     1081 cgatggttct tcttcgccga ggcgaagcat ccgcagaacc tttattacgc acgagtggga
     1141 tgacgcttgg gccttggcgg ggagtcgcgg tcttagcgcg ctcgagacga ctacagcgga
     1201 gcagatcgct cccggagcag caagtattca atcgctccct tcaaaacgac gcatgcgaaa
     1261 cgatcagcgg acatcgaacc gctgaatcat tttgcgctct caattcaagc gtgaaatatt
     1321 gcgtaaggcc ttgagaaggt cgcctccttt tcgatcggtt cattcgccag aaaactagga
     1381 tcatcccctt aacgaacaca gcctttaggc atgcgtccaa agaacgctct cgcataggcg
     1441 atggtgaact gcgcgtgtgc gacaggtatc ggaaacgtga gcgatgaaac gtgaacatta
     1501 cgcgtcatca gaaatgcttc cgggagtcgg cgtgcgactg ttcgtttcaa ggctactgct
     1561 taaaaagctt agccgggcga atggcaggca tcgtgttcga tcaccgcaac ttctacgatg
     1621 aatcaacggg ggcaggtatg acaaggtcag gcaaattgga atcgaaattg ttcaacgtga
     1681 ggcgtgctgc cggcaccgcc acgctggcgt tactgctgtt gggcggtggc atttccggat
     1741 ccgcgcaggc cgcgagcttc cattgcggca agagggtctc aagctcggaa aagctcgttt
     1801 gcaatgatcc cgaactgtcg tctctcgacg acaagctggc gatctcctac aagcgcgcga
     1861 aagacgttac gcccgacacg gcggcttttg aggacgaccg cgtcaagcag tggcagtggc
     1921 gtcagcacaa ctgcaaggac aag
//
LOCUS       DATGBK010001748         2321 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_182581, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001748 DATGBK010000000
VERSION     DATGBK010001748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182581"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..938)
                     /locus_tag="VKJ77_24610"
     CDS             complement(<1..938)
                     /locus_tag="VKJ77_24610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HMC48522.1"
                     /translation="MSRRTLLKGAVAAAGIAGFPYVHAQEKITLRYLGTAVNQSSDIA
                     KKFQEDTGIQIQYIPVTTDDVAKRIITQPNSFDIVDTEYFSLKKLIPAGTLAGMDAKK
                     IKLADKITPVLTRGEVDGKKIGDQGTAPKKVMFLTGAHSTEFSATPTEWMTLIPTTYN
                     ADTLGIRPDLIKRPITSWAELLNPEFKGRAALLNIPAIGIMDSAMAIEAMGHVKYGDK
                     GNMTKAEIDQTIKILIEAKHAGQFRAFWKDFNESVNLMASGEVVIQSMWSPAVTKVRT
                     MGIACKFQPLKEGYRSWASGFGLPRSLQGRKLDAAY"
     gene            complement(1086..2144)
                     /locus_tag="VKJ77_24615"
     CDS             complement(1086..2144)
                     /locus_tag="VKJ77_24615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC48523.1"
                     /translation="MSPSTSAVLKTEPADIELVHVSKQYGDSLAVDSIDLRIPGGQYC
                     CLLGPSGCGKTSTLRMIAGHESISDGDILIGQRNVTHAQPATRGTAMVFQSYALFPHL
                     SALDNVAFSLKMRGVAKDARRKRAGELLELVAMSAYAERKPSQLSGGQQQRVALARAL
                     LNEPRCLLLDEPLSALDPFLRVQMRAELKRWQKELGITFVHVTHSQEEALALADMVVV
                     MSHGRIEQSGSPHEVFNRPRTEFVARFLGGHNVLGANGRAFTVRADHLRIAPHGFTPV
                     QSPTSESGFSRIGGIPCTVRETEYQGTHLRMTLAPLDGSPDLVSLLPDNEYDPQRLGP
                     DARVVVWWNEQDAHALAA"
BASE COUNT          422 a          694 c          716 g          489 t
ORIGIN      
        1 tcataggctg catcaagctt tcggccttgc aacgaacgcg gcagcccgaa gcctgacgcc
       61 cacgatcgat acccctcctt gagcggctgg aacttgcacg caatgcccat cgtgcggacc
      121 ttcgtgacgg cgggcgacca cattgactgg atcacgactt cgccggacgc catcaggttg
      181 acgctttcgt taaagtcttt ccagaatgcg cggaactggc ccgcatgctt cgcttcgatc
      241 aggatcttga tggtctgatc gatctcggcc ttggtcatgt tgcccttgtc gccgtacttg
      301 acatggccca ttgcctctat cgccatggcc gaatccatga tgccgattgc cggaatgttc
      361 aggagtgcgg cacgtccctt gaattcaggg ttaagcaact cggcccagct cgtgatcggg
      421 cgcttgatca ggtcgggacg gatgccgagc gtatccgcgt tgtaggtggt cgggatcagc
      481 gtcatccatt cggtgggcgt cgccgagaac tcggtcgagt gcgcacccgt caggaacatc
      541 accttcttgg gggccgtgcc ctggtcgccg atcttcttgc cgtcgacctc gcctcgcgtg
      601 agcaccggcg tgatcttgtc ggcaagcttg atctttttcg cgtccatgcc ggccagcgtg
      661 ccggcgggaa tcagcttctt cagcgagaag tactcggtgt cgacaatatc gaacgaattt
      721 ggctgcgtga tgatgcgctt ggcgacgtcg tcggtggtca ccgggatgta ctggatctgg
      781 atgccggtat cttcctggaa tttcttggcg atatctgaac tctggttcac tgccgtgccc
      841 aggtagcgaa gcgtgatctt ttcctgcgcg tgcacgtacg gaaaccctgc aatgccggcc
      901 gcggctaccg cgcccttgag caaggtgcgg cgtgacatgc ccttgcctgc gccaaggctg
      961 gattcggtcg tggcggcggt cgccggcgtc tcgcttatgc tgggatcgga cgggtgttcg
     1021 taacgctcgg tcatggacat ctcccttggt tgaaattgtc gttcgctgca atggaaatcg
     1081 gtctcttatg ccgccaacgc atgtgcgtcc tgctcgttcc accagaccac gacacgtgcg
     1141 tcgggtccca ggcgctgtgg gtcgtattcg ttatcgggga gcaatgaaac caggtcgggc
     1201 gaaccgtcga gcggtgcgag cgtcatgcgc aaatgggtac cctgatattc agtttcgcgg
     1261 accgtgcacg ggatgccgcc gatccggctg aagccgcttt cgctcgtggg tgactggacc
     1321 ggcgtgaagc cgtgcggtgc tatacgcaga tgatcggcgc gcacggtaaa cgcacggccg
     1381 ttagcgccga gcacgttatg tccgccaagg aaacgcgcga cgaattccgt gcgcggccgg
     1441 ttgaatactt cgtgcgggga gccgctttgc tcaatgcgcc cgtggctcat cacaacgacc
     1501 atatccgcaa gcgcgagcgc ctcttcctgc gagtgcgtta cgtgcacgaa cgtgatgccc
     1561 agctccttct gccagcgctt gagttcggcg cgcatctgca cgcgcaggaa cgggtcgagt
     1621 gcggacaagg gttcgtcaag cagcaggcaa cgcggctcat tcagcagcgc gcgggcgagc
     1681 gcgacacgct gctgctgccc ccccgacagc tgtgacggct tgcgttcggc ataggcgctc
     1741 atcgcgacaa gttccagcag ttcacccgcc cgcttgcggc gtgcgtcctt agcgacgccg
     1801 cgcatcttca ggctgaatgc gacgttgtcg agcgcggaca aatgcgggaa caacgcataa
     1861 ctctggaaga ccatcgcggt gccgcgcgtg gcgggctgcg cgtgcgtgac gttgcgctgc
     1921 ccgatgagga tgtcgccgtc gctgatcgac tcatggccgg cgatcatccg caacgtcgac
     1981 gtcttgccgc agcccgacgg cccaagcaga cagcagtact ggccgccggg aatccgcaag
     2041 tcgatcgaat cgacggcgag cgaatcgcca tattgcttcg atacatgcac cagttcgata
     2101 tcggcgggct cggttttaag cacggctgaa gtggacggac tcatgggtac gaactcatgc
     2161 agggcgtttc cttgataaaa gcgcggcgag cggcaaccaa cacggcggca aggtattggc
     2221 aagactctca atgcaagaca tatgccaatt tgctgacata tcgaaccctt tatacgcacc
     2281 atcaccccta ttgaacgcag acgatacggc gtgtgaattg c
//
LOCUS       DATGBK010001749         1780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_298529, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001749 DATGBK010000000
VERSION     DATGBK010001749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298529"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(113..487)
                     /locus_tag="VKJ77_24620"
     CDS             complement(113..487)
                     /locus_tag="VKJ77_24620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mth938-like domain-containing protein"
                     /protein_id="HMC48524.1"
                     /translation="MKLHQEASGALNTITSYGADYVAINLQRHEGSIIVMPETPVIAW
                     PVSSFEALTPEDFDALIAIAPEVVVFGSGTRLRFPHPRLVAKLTQQRIGVETMDFGAA
                     CRTYNILMSEGRRVAAALLIEA"
     gene            1050..>1780
                     /locus_tag="VKJ77_24625"
     CDS             1050..>1780
                     /locus_tag="VKJ77_24625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC48525.1"
                     /translation="MKPILKSNKLQNVCYDIRGPVLEHAKRLEDEGHRIIKLNIGNLA
                     SFGFDAPDEIIQDMIRNLPTSSGYSDSKGVFAARKAIMHYSQQKGVAGVELDDIYIGN
                     GASELIVMAMQGLLNDGDEVLLPAPDYPLWTAAVSLSSGTPVHYLCDESAGWMPDLDD
                     LRSKITPNTKALVIINPNNPTGALYSDELLLEMIELARKHGLIIFADEVYDKIVYDGL
                     KHTAVGALSEDVLTVTVNSLSKSYRA"
BASE COUNT          360 a          518 c          525 g          377 t
ORIGIN      
        1 ccgatagccg taccgatatc ggcgccgggc ggcagtttat cgtactggcg cgtggaatcg
       61 gcgtcggagc gttgtcgcgg cgttcgtgcc agcttccacc ggtaagccgg gatcacgctt
      121 cgatcagcag cgcagccgcg acccggcggc cttccgacat gagaatgttg taagtacggc
      181 atgcggcgcc gaaatccatt gtctccacgc cgatgcgttg ctgggtgagt ttagcgacaa
      241 gccgaggatg cggaaaacgc aggcgcgtac cgctgccgaa cacgacgact tcaggtgcga
      301 tcgcgatgag agcgtcaaaa tcttccggcg tcagcgcttc gaacgacgac acaggccacg
      361 cgatcaccgg cgtttccggc atcacgatga tgctgccttc atggcgttgc agattgatcg
      421 cgacgtaatc ggcgccgtaa ctcgtgatgg tattgagcgc gccgctggct tcctgatgta
      481 atttcaaatc ggtattccga caggcaagtt gatggcgaga agtgactgcg cgagaggcct
      541 gcgccaaccg gttggcctgg cgcgcaatgc agctttcatc ggctcgcgcg ggcacctgga
      601 tgaagccaat gtgcacgcgt tttgctgggg gcgcattgcg aaagtcacgg ataatccgct
      661 aaattataac ttttcagccg ccagcgggtt gcgagcccgg gcggagcgat gcatcgcgtg
      721 ccgccacaag ctgcttgtcg acacgcaatc gggcgttttg ccttggcctg atggccataa
      781 gctcacacga ttcagcccaa acctgcctct atctgacgca ttttcgctag actgcctgtt
      841 ccgcgtcgct acttagggtt tctgcgtggt gtccggtcca tttgcggtct cggtttgacg
      901 tgttttcaca ctccgcgcct aaaacgccgg gcgaaaacac cgacgtggcc gatgccgcac
      961 tgagtccgcg ggcctgacgt gtcaacttta tttgctgatt tttcctgatc cagagcctga
     1021 tttccagtaa cccattgagc tttcccgccg tgaaaccgat tctaaaatcc aataaattac
     1081 agaacgtctg ttatgacatt cgcggtcccg tgctcgagca cgcgaagcgg ctggaggacg
     1141 agggccaccg gatcatcaag ctcaatatcg gcaacctggc ttcgttcggc ttcgacgcgc
     1201 cggacgagat tattcaggac atgatccgca acctgccgac ctcgtcgggt tattcggact
     1261 cgaaaggcgt gttcgccgca cgcaaggcga tcatgcatta cagccagcaa aagggtgtgg
     1321 cgggcgttga gctggacgac atctacattg gcaacggtgc gtccgagttg atcgtgatgg
     1381 ccatgcaggg cctgctcaac gacggcgacg aagtgctgct gcccgcaccg gactatccgc
     1441 tgtggacggc tgcggtgagc ttgtcgtccg gtacgccggt gcattatctc tgcgacgaat
     1501 ccgccggctg gatgcccgat ctcgacgacc tgcgctcgaa gatcacgccg aacacgaagg
     1561 cgctcgtcat catcaacccg aacaatccga ccggcgcgct gtattcggac gaactgttgc
     1621 tggagatgat cgaactggcg cgcaaacacg gcctgatcat tttcgccgac gaagtttatg
     1681 acaagatcgt ctatgacggc ctcaagcaca cagccgtcgg tgcattgtcc gaagacgtac
     1741 tgactgtcac ggtcaacagt ttgtcgaaga gctaccgggc
//
LOCUS       DATGBK010001750         2120 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_344810, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001750 DATGBK010000000
VERSION     DATGBK010001750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344810"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1164
                     /locus_tag="VKJ77_24630"
     CDS             <1..1164
                     /locus_tag="VKJ77_24630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017878556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HMC48526.1"
                     /translation="RWFHLTAGIAWIGASFYFVWLDNHLTPPLKSEDAANGVSGELWS
                     VHGGGFYHNQKYLTGPTSEPLTHDLHWFKWEAYSTWLSGMAMLAIIYWAGASTFLIDK
                     SVLDLTPAVAIEISIASIVIGWFVYDALCRDLFTRPLLLGAVIYGLLVAASYALFHIF
                     GARAAYIHVGSIIGTIMVANVLFIIIPGQQKMLAQIRAGEKPDPLPGVLGKVRSVHNT
                     YFTLPVLFIMISNHYPMTYSGPYGWLVLAVLGAAGVCVRLFFVRSHKGKILPILLVAA
                     AALIVAVAVALAPRTPAPQTANTWGVPFATIQPIVAQRCAVCHAAHPTQAGFATAPQG
                     VMLDTPERIVQASARIQQQAIATHAMPLGNITKMTDSERATLGQWIAQGAHIP"
     gene            1164..1490
                     /gene="uraH"
                     /locus_tag="VKJ77_24635"
     CDS             1164..1490
                     /gene="uraH"
                     /locus_tag="VKJ77_24635"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018443515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HMC48527.1"
                     /translation="MGRLSTHVLDTTKGVAASGIIVELWQIAGEAVIPIASATTDSGG
                     RASIVADGELKTGTYELRFGVRTYFGGEGLWDQVFVRFDIRDASANYHIPLLVSPWAY
                     TTYRGS"
     gene            complement(1504..1878)
                     /locus_tag="VKJ77_24640"
     CDS             complement(1504..1878)
                     /locus_tag="VKJ77_24640"
                     /inference="COORDINATES: protein motif:HMM:NF017868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HMC48528.1"
                     /translation="MLFFICGSALTGQPDHGNLSGAKLVREAQTKPIYRLHSVNDQHP
                     GIYEVPTGGISIKGEIYEMSDAQHAHLLVTEPPDLYEAPIKLEDGTSVPAMIYPRDLI
                     EKRNFADISNYGGWAAFKAAKK"
     gene            complement(1888..>2120)
                     /locus_tag="VKJ77_24645"
     CDS             complement(1888..>2120)
                     /locus_tag="VKJ77_24645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012078526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48529.1"
                     /translation="NYGGWAAFKAANIASGAGHDAMCVAHVAPVAMIFVPSIGGQSHV
                     GTERTAPQDLELGITALFGSLLAIDAELAKKP"
BASE COUNT          423 a          650 c          577 g          470 t
ORIGIN      
        1 cgctggtttc acctcaccgc cggcattgca tggatcgggg catcgttcta tttcgtttgg
       61 ctcgataatc atttaacgcc gccgctcaaa tccgaagatg ccgcaaatgg cgtatcgggc
      121 gaactctggt ccgtccacgg cggcggattc taccataacc aaaaatacct aacagggcca
      181 acgagcgaac cgctcacgca cgacctgcat tggttcaagt gggaagcgta ctcgacgtgg
      241 ctttccggca tggcgatgct cgccatcatc tattgggccg gcgcaagtac atttctaatc
      301 gacaaaagcg tacttgatct tacgcccgcc gtcgcaattg agatcagcat cgctagcatc
      361 gtcatcggct ggttcgtcta cgacgcgctg tgccgcgact tgtttacacg accgctgctg
      421 ctaggcgccg tcatttacgg tctgctcgtt gcagcatcgt acgcactctt tcacatcttc
      481 ggcgcgcgcg cagcctacat ccacgtcggc tcgatcatcg gtacaatcat ggtcgccaac
      541 gttttattca tcatcatccc cggccagcaa aagatgctcg cgcaaatacg tgccggtgaa
      601 aagccggacc cgctcccggg cgtactgggt aaagtccgtt ccgtccacaa cacgtatttc
      661 acgctacccg tgctgttcat catgatcagc aatcactacc cgatgacata tagtggccca
      721 tacggctggc tggtactcgc cgtcctcggc gccgcaggcg tttgcgttcg cttgttcttc
      781 gtacgcagcc acaagggcaa gattcttccg atcttgctgg tcgccgcagc ggccctcatt
      841 gtcgcagtcg ccgtcgcact cgcacctcgc acgccggcgc cgcaaaccgc aaatacttgg
      901 ggagtgccgt ttgcaacgat tcaaccgatc gtcgcgcaac gctgtgccgt gtgccacgcc
      961 gcgcatccca cacaagcggg tttcgcgacg gcgccacaag gcgtgatgct cgacacaccg
     1021 gaacgcatcg tgcaagcttc agctcgaatt caacagcaag ccatcgctac gcacgccatg
     1081 ccgctgggta acatcaccaa aatgaccgat agcgaacgcg ccacactcgg ccaatggatc
     1141 gcacaaggag cgcacatacc ataatgggac gcctctcaac acacgttctc gacaccacca
     1201 aaggcgtcgc cgcaagcggc atcatcgtcg aactgtggca gatcgccggc gaagccgtca
     1261 tcccgatcgc atcggcaaca actgactccg gcggccgcgc atcaatcgta gcggacggcg
     1321 aactaaaaac cggcacctac gaactgcgct tcggcgtgcg cacctatttc ggcggcgaag
     1381 gcctttggga tcaagtcttc gtccgcttcg acatccgcga cgcatccgca aactatcaca
     1441 ttcccttact cgtctcgccg tgggcctaca ccacgtatcg cggaagctag ggcgcgatct
     1501 tcgctatttc tttgccgctt taaatgcggc ccagccgccg tagtttgaga tgtctgcgaa
     1561 attgcgcttt tcgatgaggt cgcggggata aatcatcgcg gggacgctgg ttccgtcttc
     1621 gagtttaatt ggggcctcgt ataaatcggg gggttcggtt acgagtaagt gcgcgtgttg
     1681 tgcgtcgctc atctcgtaga tctcaccctt gattgagatg ccgccggtcg ggacttcgta
     1741 gatgccggga tgttggtcgt tgacggaatg caagcgatag atcggttttg tttgggcttc
     1801 ccgaacgagc ttcgcgccgc tcagattgcc gtgatcgggt tggccggtga gggcggagcc
     1861 gcagataaaa aatagcataa gttctcctta gggttttttg gccagctctg cgtcgatggc
     1921 gagcaggctt ccgaatagcg cggtgatgcc gagttctaaa tcttgcggtg ccgttcgctc
     1981 ggttccaacg tggctctgtc caccaatgct tggtacgaaa atcattgcga ccggcgcaac
     2041 gtgcgcgacg cacattgcgt cgtgtccggc gccgctggct atgtttgccg ctttaaatgc
     2101 ggcccagccg ccgtagtttg
//
LOCUS       DATGBK010001751         1553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_44446, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001751 DATGBK010000000
VERSION     DATGBK010001751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44446"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1021)
                     /locus_tag="VKJ77_24650"
     CDS             complement(<1..1021)
                     /locus_tag="VKJ77_24650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012336837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48530.1"
                     /translation="MLEMTTDPAHADRARARERRKDLIQKFAALGSLVMLVVVFSATS
                     NAFMSLGNGMTVALQVTSIAYLGIGATCVIITGGIDLSVGSVLALSGVVAAMLVKAGV
                     PVPIGMLGGVIVGAICGAFNGLFVTRMGLPPFIATLGMMLVARGVALQITGARPVSGL
                     GDSFAELGNGSLFRVVRMGSDGFPDIVFPGIPYPVIIMVVLAVLVAIMLSRTSLGRHI
                     YAVGSNAEAARLSGVNVNRVKLFTYVLSGALAGLTGCVLMSRLVTAQPNEGVMYELDA
                     IASAVIGGTSLMGGVGTISGTAIGAFVIGILRNGLNMNGVSSFIQQIIIGLVILGTVW
                     IDQIRN"
     gene            complement(1014..>1553)
                     /locus_tag="VKJ77_24655"
     CDS             complement(1014..>1553)
                     /locus_tag="VKJ77_24655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48531.1"
                     /translation="SPIDAIRNGIAYLSEDRKGNGLALQMTVAKNITLANVEAVSGAG
                     GFIRFEEEAKVARKYIDALGIRTPSVNQITRNLSGGNQQKVVISKWLFRESKILFFDE
                     PTRGIDVGAKYAIYELMDRLAAQGIGVVLISSELPEIMGMTDRVAVFHEGQIAGVLET
                     RKTNQEEIMHYASGRIAHA"
BASE COUNT          327 a          522 c          431 g          273 t
ORIGIN      
        1 ggttccggat ctggtcaatc cacaccgtcc ccaagataac caggccgatg atgatctgct
       61 ggatgaaact cgatacccca ttcatgttca gcccgttgcg caagatgccg atcacgaacg
      121 cgcctatcgc cgtgccggag atggtgccta ctccgcccat cagcgacgtg ccgccaatca
      181 ccgcgctcgc gatggcatcg agttcgtaca tcacgccttc gttcggctgc gccgtcacca
      241 gccgagacat cagcacgcac ccggtcaaac ccgcaagcgc gccggacaat acataggtga
      301 agagcttcac gcgattcaca ttcacgcccg acagccgcgc cgcttctgca ttcgatccca
      361 ccgcatagat gtgtcgccca agcgaggtgc ggctgagcat gatggcgacc agcaccgcca
      421 gcacgaccat gatgatcacg ggatacggga tgcccggaaa cacgatgtcg ggaaacccgt
      481 ccgagcccat acggaccacg cgaaagagcg agccattgcc gagttcggcg aaagaatcac
      541 ccagtcccga taccggccgc gcgccggtaa tctgcagcgc cacgccgcgc gcgacgagca
      601 tcatgcccag cgtggcgatg aacggcggca agcccatgcg cgtgacgaac aaaccgttga
      661 acgcaccgca gatcgcgccc acgatcacgc cacccagcat gccgataggc acgggcacgc
      721 cggctttcac gagcatcgcg gcgaccacgc ctgacagcgc gagcaccgac ccaaccgaca
      781 agtcgatacc gccagtaatg atcacgcacg tcgcgccgat cccgagataa gcgatggacg
      841 tcacctgcaa cgccacggtc atgccgttgc ccagtgacat gaacgcgttg ctggtcgccg
      901 agaacacgac cacgagcatc accaggcttc ccagtgccgc gaacttctgg atcaggtcct
      961 tgcggcgttc acgggcgcgg gcacggtcgg cgtgcgccgg gtcggtagtc atctcaagca
     1021 tgggcgatcc gtcctgatgc gtagtgcatg atttcttcct gattggtttt gcgggtctcg
     1081 agcacgcccg ctatctggcc ttcatgaaac acggccacgc gatccgtcat gcccatgatt
     1141 tcgggcaact ccgagctgat caatacaacg ccgatgccct gcgccgcgag ccggtccatg
     1201 agctcataga tcgcgtattt cgcaccgacg tcgatgccgc gcgtgggttc atcgaagaac
     1261 aggatcttcg attcgcggaa cagccatttg ctgatcacga ccttttgctg attaccgccc
     1321 gagagattgc gcgtgatctg gttcacgctc ggcgtacgaa tgcccagcgc atcgatatat
     1381 ttgcgcgcga ccttcgcctc ctcttcgaag cggataaacc cgcccgcgcc cgataccgct
     1441 tccacgttag caagcgtgat gttcttcgcg accgtcatct gcagcgcgag accattgccc
     1501 ttgcgatcct cggagagata cgcaatgccg ttgcgaatcg cgtcgatggg cga
//
LOCUS       DATGBK010001752         3761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_136453, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001752 DATGBK010000000
VERSION     DATGBK010001752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136453"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1860)
                     /locus_tag="VKJ77_24660"
     CDS             complement(<1..1860)
                     /locus_tag="VKJ77_24660"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC48532.1"
                     /translation="MKAQSSTLSSVSFEGFRLDMVNECLWRLDADATPERIDLTRKTF
                     GVLRFLIEHRGALITHDALLEAVWPDVHVQPEVVKTHIQMIRARLGDSAQRPRYIETL
                     RGRGYRFVAPVMVPTTALLPVVSDERSEESFGRFAGRTSELQQLSAAMERARSGNAQV
                     VMVAGEPGIGKTALLEQFVAAQRLKHDDAWIAEGRCVEGYGGTEPFYPVLQALGQLCQ
                     GSGGSEVVKALVTLAPTWALQLPGQVASHVRESLHRQILGASRERMLREISGLLSFLT
                     QTQPLLLIFEDLHWADYSTIDLLAAIARQPGALRLMVVATYRHGDAVLTEHPIEQLHH
                     ELSLRGLCRDLALGPLPRDAIVSWLTDRDHIDPAEEELCYLIAQRCGGNPLFMRATLA
                     DLVERDMLRKTATGWRPLAPLAMIGAAAPRTITQTLEGRVRRLGSDERNLLEAASVAG
                     LCFSSATVAEAAGLSTEQFDDLCEALARNQRFIQRCGVKRLPDGGVAAMFCFDHALIR
                     HAFYGRQGLTRRSRLHRQIAERLEAIYARDQRAEVAYELGQHFADARDWLKAIDYLRI
                     ALQTAKVRFAYREAQSILDFAASLTSRLPADLRPLKSFEFAEARASLYAAAHDP"
     gene            2151..>3761
                     /locus_tag="VKJ77_24665"
     CDS             2151..>3761
                     /locus_tag="VKJ77_24665"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC48533.1"
                     /translation="MIDFPPFRLDQVNRCVWKCAPDGTSRRLTLAPRAYDMLQYLIDH
                     AGRLITHDEFLDALWQNVHVQPEVLKAHMLTIRTALGDDPGHPSFIETHRGRGYCFIA
                     PLHASSSTGAREADNGSHGAFVGRTAQLNRLKTLFDEARNGASRIVFVAGEPGIGKTT
                     LVNRFLDSLDGDATVLTSLGRCVEGYGGIEPYYPVLDALTRLTRGEAGPMITRTLVSI
                     APTWALQMLGSVPPQYRAELQHQVIGAASGRMLREICEFLEALSLQRPVALVFEDLHW
                     SDYSTVDMLSALARHRSGARLMVIATYRPEDAELVQHPLCRLNRDLGLQKLCHDIVLE
                     ALTESAIAEYLTGSAHDDRPESANGFAQLVRERSGGNPLFMVATLDHLVEQGIAQSTP
                     EGWKLHLSPSEVRLEVPLTLNQVIEHRIQRLSDDQQRALEAASVAGLAFSATTAAPAA
                     GLGQEHFEDICEALCRHESFIRREPSSTLDDSLAACTYAFRHTMYRQTFYERQGLLRT
                     ARSHLRVAEALEALFAPDERGGVAAELAQ"
BASE COUNT          713 a         1210 c         1146 g          692 t
ORIGIN      
        1 cggatcatgt gcagcggcgt aaagcgaagc gcgtgcctcg gcaaactcaa agcttttaag
       61 cggccgcaaa tcagccggca acctggaggt gagcgaagcg gcaaagtcga gaatcgactg
      121 cgcctcgcga tacgcaaagc gaacctttgc ggtctgcaaa gcaatgcgta gatagtcgat
      181 cgctttgagc cagtctctcg cgtcagcaaa atgttgtccg agctcgtatg ccacctccgc
      241 tctctggtcg cgcgcataga tcgcctcgag ccgctccgcg atttgccgat gcaaacggga
      301 gcgccgagtc agtccttgac gcccatagaa cgcgtggcga atgagggcgt ggtcgaaaca
      361 gaacatagcc gccacgcccc cgtcgggtaa gcgtttcact ccgcaacgct gaataaagcg
      421 ttgattgcgt gcgagcgcct cgcacagatc gtcgaactgc tccgtcgaca gacccgcggc
      481 ctcggccacg gtcgcggatg aaaagcagag ccctgcaacg ctagcggctt caaggagatt
      541 ccgttcgtcg ctgcccaggc gccggactct tccctcgagc gtctgggtta tcgtgcgtgg
      601 cgctgccgca ccgatcatcg ccaatggcgc cagcggccgc cagcccgtgg ccgtcttgcg
      661 gagcatgtcg cgctccacga gatcggcgag ggtcgcccgc ataaacagcg gattgccgcc
      721 gcaacgttgc gcgatgagat aacacagttc ttcctcggcg gggtcaatat gatcgcggtc
      781 tgtcagccat gaaacgatcg cgtcgcgagg caatgggcca agcgccagat cccggcatag
      841 gcctctcaac gaaagctcgt gatgcagttg ctcgatcggg tgttcggtca gcactgcatc
      901 gccgtgccgg taagtggcga cgaccatcag gcgtagcgct cctggctggc gcgcgatcgc
      961 cgccagcaaa tctatggttg agtagtcggc ccaatggaga tcttcgaata tcagaagtag
     1021 cggttgcgtc tgcgtcagaa aactcagcaa gccgctgatc tcccgcagca tgcgttcgcg
     1081 cgacgcgcca aggatctgcc gatgcaggga ctcgcggaca tgactcgcca cctggcccgg
     1141 gagctgcaat gcccacgtag gcgccagcgt caccagcgct ttcacgactt cgctgccgcc
     1201 gcttccctgg cagagttgcc cgagcgcctg cagaaccgga taaaacggct ccgtgccgcc
     1261 atagccctcg acacaacgcc cttcagctat ccacgcatcg tcatgtttca acctttgggc
     1321 ggcaacgaac tgctcgagca acgctgtctt gccgatacct ggctcaccag cgaccatcac
     1381 gacctgagcg tttccggatc gggcccgctc cattgcagca ctcagttgtt gcagttcgct
     1441 tgtgcgcccc gcaaagcggc caaagctctc ctcgcttctc tcgtcgctta cgaccggcag
     1501 gagcgcagtt gtcgggacca ttacgggtgc gacgaaacga tagccgcgtc cgcgcagcgt
     1561 ttcgatgtag cgagggcgct gcgcactatc gccgagccgt gcccggatca tctgtatgtg
     1621 ggtcttcacg acttcgggtt gcacgtgcac atcgggccac accgcttcga gcagcgcgtc
     1681 atgggtaatc agcgcaccgc gatgctcgat caaaaaccgc aaaacgccga aggtcttgcg
     1741 cgtcagatcg atccgctcgg gtgtcgcgtc ggcatccagg cgccaaaggc attcgttcac
     1801 catatccaga cgaaagcctt cgaaactaac cgacgacagc gtgctcgact gagccttcat
     1861 acgaaccttg ctcctcatgc ctggactggc tcaaatgggt tgcgggattg cgcggggttt
     1921 gcgcgcgtga ccgcttgggt gcggttttcg cagcgagcac agacttttgc cgtcagggta
     1981 aggcggccga cgcccggaag ggtgaatttt tggtcttaat atggtaatgg attagctcag
     2041 tgcgcattac cgtcgcgcgt gacgcctttg ccatcacgcc ggaccggtat tggtctgcac
     2101 agttgttccg ataattacaa tctcattcgc cgtctggtcg gagaacctac gtgatcgatt
     2161 tcccaccctt tcgattggat caagtgaatc gatgcgtctg gaaatgtgca cccgacggca
     2221 cgagccgcag gctcacgtta gcgccgcgcg cctacgacat gctgcaatac ctgatcgacc
     2281 acgccggccg gctcatcacg cacgacgaat tcctcgatgc actgtggcag aacgtgcacg
     2341 tacagcccga agtgctgaag gcccacatgc tgaccatccg cacggcgctc ggcgacgatc
     2401 cgggacatcc aagctttatc gaaacccatc gcggtcgcgg ctattgcttc atcgcgccgc
     2461 tgcacgccag ttccagcacc ggcgcgcgcg aggcggataa cggcagccat ggcgcgttcg
     2521 tcggccgcac ggcgcaactg aaccggttga agacgctgtt cgacgaggcc cgcaatggcg
     2581 catcgcgcat tgtgttcgtg gcgggggaac cgggtatcgg caagacgaca ctcgtcaatc
     2641 ggttcctgga ctcgctcgat ggcgatgcca ctgtgttgac gtcgctcggg cgctgcgtcg
     2701 agggctacgg cggcatcgag ccgtactacc cggtgctcga cgcgctgaca cggctgaccc
     2761 gcggcgaagc gggcccgatg atcacccgca cgctcgtgtc aattgcgccg acctgggccc
     2821 tccagatgtt ggggtcggtg ccgccgcaat accgcgccga gctacagcat caggtcatcg
     2881 gcgcggcgag cggacgcatg ttgcgcgaga tttgcgaatt cctcgaagcg ctgtcgctgc
     2941 agcgcccggt cgcgctggtg ttcgaagacc tgcactggtc cgactattcg acggtcgaca
     3001 tgctgtccgc gctggcccgt catcgcagcg gcgcacgtct gatggtgatc gcgacttacc
     3061 gcccggaaga cgccgaactc gtgcaacacc cgttgtgccg gctgaaccgc gatctggggc
     3121 tgcagaagct ctgtcatgac atcgtgctgg aagcgttgac cgaaagtgca atcgccgaat
     3181 atctgacggg tagcgcgcac gacgatcggc ccgagagcgc gaacggcttc gctcagctcg
     3241 tgcgcgagcg ctcgggcggc aaccccctgt tcatggtcgc gacgctcgat caccttgtcg
     3301 aacaaggcat cgcgcaatcg acgcccgaag gctggaagct gcatctgtca ccctcggaag
     3361 tgcggctgga agtaccgctc acgttgaacc aggtcatcga gcatcgcatc cagcggctga
     3421 gcgacgacca gcaacgcgcg ctcgaagccg cgagcgtcgc cggcctcgcg tttagcgcaa
     3481 ccaccgcggc gccggccgcc ggcttgggcc aagagcattt cgaggatatc tgcgaggcgc
     3541 tctgccgtca cgaaagcttc atccggcgag aaccgtcgtc tacgcttgat gacagtctcg
     3601 ccgcgtgcac ctacgcgttc cgccacacga tgtaccggca gacgttctac gagcggcaag
     3661 gtctgctgcg caccgcccgc tcgcatctgc gcgtcgcgga ggcgcttgag gcgctgttcg
     3721 caccggacga gcgcggcggg gtcgccgccg aactcgcgca g
//
LOCUS       DATGBK010001753         1724 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_344863, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001753 DATGBK010000000
VERSION     DATGBK010001753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344863"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..162)
                     /locus_tag="VKJ77_24670"
     CDS             complement(<1..162)
                     /locus_tag="VKJ77_24670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013340973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspE"
                     /protein_id="HMC48534.1"
                     /translation="MNTLSASVANVATSTPSPLAARLIPYAFARTGQILVAHQHADSI
                     EVWISDKTSD"
     gene            complement(159..>1724)
                     /gene="gspD"
                     /locus_tag="VKJ77_24675"
     CDS             complement(159..>1724)
                     /gene="gspD"
                     /locus_tag="VKJ77_24675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system secretin GspD"
                     /protein_id="HMC48535.1"
                     /translation="KGGDNSSSSSGSGSSSGSGSFGSNGSSSSTGTSGTPPLPSGLGS
                     SSSSSGSNPMAGGGQSKDSGFSNNNDSNSSSDSPGNGMIQADTATNSLIITASDPVYR
                     NLRAVIDQLDARRAQVYIEALIVELSATTGANLGIQWQGALLSQGGNNGIYGNSNLGT
                     GTSSIVDLTAAGATVANNPASLAGQTNILAQGLNIGLLHKFGNFFGLGGLLQALSTSS
                     DANILSTPNLITLDNEEAKIVVGQNVPVVTGSYATPTANTGTSVSAFNTFDRRDVGVT
                     LHVKPQITTGGILKLQLYQEDSSVDTTTTNNPGGVTINTRSIQSTILADDGEIVVLGG
                     LMQDQYSTSNSKVPLLGDIPWIGQLFRSEAKTRTKTNLMVFLRPVIVRDQATSSQISN
                     DRYENLRQQQYNSTSDNRIEKDKDVPVLPPAPIGPSQGGVPSQNLFDWNNMTRSPSQG
                     GSATLPQAPPPKMQDQQGQYQGQQQYQTAQPPGQYQGQGQYQGQPANVNNYAVPNNSA
                     PAVPLNGDAGARP"
BASE COUNT          277 a          537 c          536 g          374 t
ORIGIN      
        1 gtcgctggtt ttatcgctga tccacacttc gatgctatcc gcgtgctggt gcgccaccag
       61 gatctgtccg gtccgcgcga acgcgtacgg gatcagccgt gccgctagcg gcgacggcgt
      121 gctcgtggca acgttcgcga ccgacgcgct cagcgtgttc acggccttgc tcccgcatcg
      181 ccgttaagcg gcacggccgg tgccgagtta ttcggcacag cgtagttgtt cacgttcgcg
      241 ggctggcctt gatactgccc ctgcccttga tactggcccg gtggctgcgc cgtctgatac
      301 tgctgctggc cttgatactg cccttgttga tcctgcatct tcggcggcgg cgcctgcggc
      361 aacgtcgcgc tgccaccctg cgacggcgag cgtgtcatgt tgttccagtc gaacaagttc
      421 tgcgacggca cgccgccctg gctcgggccg atcggcgccg gtggcagaac cggcacgtcc
      481 ttatccttct cgatgcggtt atcggacgtc gagttgtatt gttgctgacg caagttctcg
      541 tagcgatcgt tcgatatctg cgagctggtc gcctgatcgc gcacgatcac cggacgcagg
      601 aacaccatca ggttggtctt cgtccgcgtc ttcgcttcgc tgcggaacag ctggccaatc
      661 cacgggatat cgccaagcag cggtactttg ctgttgctcg tcgaatactg gtcctgcatc
      721 aagccgccga gcacgacgat ttcaccatcg tccgccagga tggtcgactg gatcgagcgc
      781 gtgttgatcg tcacgccgcc gggattgttg gtcgtggtgg tatcgacgct ggagtcttcc
      841 tgatagagct ggagcttcag gatgccgccg gtcgtgatct gcggtttcac atgcagcgtc
      901 acgcccacgt cgcgccggtc gaacgtattg aacgctgaga ccgacgtgcc ggtattggcg
      961 gtcggtgtcg catacgaacc ggtcaccacc ggcacgttct ggccgaccac gatcttcgct
     1021 tcctcgttat ccagcgtgat gaggttaggc gtcgacagga tgttcgcatc cgacgatgtc
     1081 gacagcgcct ggagcaaacc gcccagaccg aagaagttgc cgaacttgtg cagcaggccg
     1141 atgttgagac cttgcgcgag gatgttcgtc tgacctgcaa gcgacgccgg attgttcgcg
     1201 accgtggcgc cggctgctgt caaatcgacg atgctcgacg tgcccgtccc caggtttgag
     1261 ttgccgtaaa tgccgttgtt gccaccttgc gaaagcagcg ccccctgcca ctgaatgccg
     1321 agattcgcgc ctgtcgttgc tgacagttcc acgatcagcg cttcgatata aacctgcgcg
     1381 cggcgggcgt ccagctggtc gatcaccgca cgcaagttgc gatacaccgg atcggacgcg
     1441 gtaatgatca gcgaattggt ggccgtgtcg gcctggatca tgccgttgcc gggtgaatcg
     1501 ctggaactgt tgctgtcgtt gttgttgctg aagccagagt ccttgctctg gccgccgccc
     1561 gccatcggat tgctgcccga cgacgaactg ctgctgccga gtccgctcgg cagcggcggt
     1621 gtgccgctcg tgccggtgga cgaactggaa ccgttcgagc cgaacgaacc tgaaccgctc
     1681 gaagacccgg accccgacga cgaagacgag ttgtcgccgc cctt
//
LOCUS       DATGBK010001754         3382 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_206308, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001754 DATGBK010000000
VERSION     DATGBK010001754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3382
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206308"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2107)
                     /locus_tag="VKJ77_24680"
     CDS             complement(<1..2107)
                     /locus_tag="VKJ77_24680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004543015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC48536.1"
                     /translation="MNPSRPFILRPVGTALLMAAIMLVGLVALRFLPLSALPAVDYPT
                     IQVQTFYPGASPDVMTTSVTAPLEKQFGQMASLNQMSSQSSAGASVITLQFSLDLPLD
                     IAEQEVQAAINAAGNLLPSDLPAPPIYAKVNPADAPIITLAISSKTLPLTQVQDLADT
                     RLAQKISQVGGVGLVSVSGGNRPAVRIQANTRALASYGLNIDDLRTTISNLNVNTPKG
                     NFDGPTRAYTINANDQLTDASAYQSAVIAYKNGRPVMLTDVATVIQGAENTKLGAWVD
                     NTPAIILNVQRQPGANVIAVVDGIKKILPQLQSALPAALDVRIVTDRTTTIRASVRDV
                     QFELALSVVLVVLVIYLFLANVWATLIPSLSVPVSLIGTLAVMYLCGFSLDNLSLMAL
                     TIATGFVVDDAIVMIENIARYVEEGESALEAALKGSKQIGFTIISLTVSLIAVLIPLL
                     FMGDVVGRLFHEFAITLAVTIVISAIVSLTLVPMLCAKLLRHTPPKESHRFEARAHQF
                     IDYVIGRYGVALTWVLDRQRSTLVVALLTLVLTALLYIWIPKGFFPIQDTGVIQAITQ
                     APQAASYQAVAEQQQALAAQVLKNPDVESLTSFIGVDGTNITLNSGRMLINLKPRDDR
                     SNTSSDVIRSLQKDVENIPGIRLYMQPVQDLTIDSTVSPTQYQFMLTDPNSAEFAQWV
                     PKLTARLQQSPELADVATDL"
     gene            complement(2141..3379)
                     /locus_tag="VKJ77_24685"
     CDS             complement(2141..3379)
                     /locus_tag="VKJ77_24685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MdtA/MuxA family multidrug efflux RND
                     transporter periplasmic adaptor subunit"
                     /protein_id="HMC48537.1"
                     /translation="MVVAILIVAGLFAWHPWNRGGADNSQQARQAGGGRRGGGGPGMA
                     APPQPVHVATVTQGEMPVVINSLGTVTPLASVTVKTQLNGTLQDVAFQEGQMVKKGDV
                     LAQIDPRPYEISLRNAQGTLAKDQALLQTARLDLKRYQMLLSQDSIASQQVDTQASLV
                     QQYEGTVKSDQANVDTYKLDLTYARITAPVSGRVGLRQVDPGNYVTTGDTNGVVVITQ
                     LQPISVIFTTSEDNLTAILKPLHTGTKMSVTAYDRANTKSLESGYLETIDNQIDTTTG
                     TVKLRASFDNQESMLFPNQFVNTKLLVDVIKDATIVPTPAVLNGSSGAFVYVVKPDNT
                     VTVRNVKIGPVDGERTSIKTGLEVGDRVVIDGSDRLKEGAKITIPADKPKAASGASGA
                     AAASAASGAHHGHHRKQQQQ"
BASE COUNT          624 a         1019 c         1065 g          674 t
ORIGIN      
        1 gcaggtcggt cgcgacgtcc gccagttccg gcgattgctg cagccgcgcc gtcagtttcg
       61 gcacccattg cgcgaactcc gccgaattcg gatccgtcag catgaactgg tattgggtcg
      121 ggctgacggt ggaatcgata gtcagatcct gcaccggctg catgtagagc cggatgcctg
      181 gaatgttctc tacgtctttc tgcaggctgc ggatcacgtc gctcgacgtg ttgctgcggt
      241 cgtcgcgagg tttcaggttg atcagcatcc ggccgctgtt cagcgtgata ttggtcccgt
      301 ccacgccaat gaacgaggtc aggctttcaa cgtccgggtt cttcaggacc tgcgcggcga
      361 gcgcttgctg ctgttcggcc accgcctggt aagacgcggc ctgcggcgcc tgcgtaatcg
      421 cctggatcac gccggtgtcc tggatcggaa agaagccttt cgggatccag atatagagca
      481 gggcggtgag aacaagtgtg agcagcgcga ccaccagggt cgaacgctgc cggtcgagca
      541 cccaggtcaa cgcgacgcca taacgcccga tcacatagtc gataaactga tgcgcgcgcg
      601 cttcgaagcg gtggctttcc ttcggcggcg tatgacgcag caactttgcg cacagcatgg
      661 gcacgagcgt gagcgagacg atcgcggaaa tcacgatggt gaccgccagc gtgatcgcga
      721 attcgtggaa cagccggcca accacgtcgc ccatgaacag cagcggaatc agcaccgcga
      781 tcagcgagac ggtgagcgag atgatcgtga agccgatctg cttcgaaccc ttgagcgccg
      841 cttcgagcgc cgactcgcct tcttccacgt aacgcgcgat gttctcgatc atcacgatag
      901 cgtcatcgac gacaaaaccc gtcgcaatgg tcaacgccat cagcgagagg ttgtcgagcg
      961 agaagccgca cagatacatc acggccagcg tgccgatcag cgagaccggt acggacaagc
     1021 tcggaatcag cgtggcccag acgtttgcga ggaacaggta gatcaccagc acgaccagta
     1081 ccacggagag cgccagttca aactgcacgt cgcgcactga ggcgcgaatg gtcgtagtcc
     1141 ggtcggtgac gatccgcacg tcgagcgcag ccggcagcgc cgactgcaac tgcggcagga
     1201 tcttcttgat gccgtcgacc accgcaatca cgttcgcgcc cggttggcgc tgcacgttca
     1261 ggatgatggc cggcgtgttg tcgacccacg cgccgagttt ggtgttttcc gcaccctgga
     1321 tgacggttgc gacgtccgtc agcatcaccg gccggccgtt cttgtaagcg atgaccgcgc
     1381 tctggtacgc gctggcgtcg gtgagctggt cgttcgcgtt gatcgtgtag gcgcgcgtgg
     1441 ggccgtcgaa attgcccttc ggcgtgttga cgttcaggtt cgaaatggtg gtgcgcaagt
     1501 cgtcgatatt caggccgtac gatgccaacg cacgcgtgtt cgcctggatc cggacagcgg
     1561 gccgattacc accgctgacc gacaccagcc ccacgcctcc cacttgcgag atcttctgcg
     1621 cgagacgggt atcggcgaga tcctggacct gcgtgagcgg caaggtcttc gagctgattg
     1681 cgagcgtgat gataggcgcg tcggcggggt tcaccttcgc gtagatcggc ggggcaggca
     1741 ggtcggacgg caacaggttg cccgctgcat taatggctgc ctggacttcc tgctcggcaa
     1801 tgtcgagcgg caggtcgaga ctgaattgca gcgtgatgac cgatgcaccc gccgagcttt
     1861 gcgatgacat ctggttcagg ctcgccatct gcccgaactg cttttcaagc ggcgcggtga
     1921 ccgaggtggt catcacgtcc ggcgacgcac ccggatagaa cgtctgcacc tggatggtcg
     1981 gatagtcgac ggcgggcagc gcggacagcg gcaaaaagcg cagcgcgacg aggccgacca
     2041 gcatgattgc cgccatcagc agcgccgtgc cgaccggacg cagaataaaa ggacgcgatg
     2101 gattcatgcg ggtgcagtgc ggttatggat catgagtaca tcattgttgc tgctgcttgc
     2161 gatggtggcc gtgatgcgcg cccgaagcag ctgatgccgc cgcggctccg gaagcacctg
     2221 aagcggcttt gggcttgtct gccgggatag tgatcttcgc gccttccttc aggcggtcgg
     2281 agccgtcgat caccacacgg tcacccactt ccagacctgt cttgatgcta gtgcgttcac
     2341 catcgaccgg accgatcttc acattgcgca cggtcaccgt attgtccggt ttcaccacat
     2401 agacaaacgc gcccgatgac ccgttgagca ccgcgggcgt gggcacgatg gtcgcgtcct
     2461 tgatgacatc gaccagtagt ttcgtgttca cgaactggtt cggaaacagc atgctttcct
     2521 gattgtcgaa ggatgcgcgc aacttgacgg tgcccgtggt ggtgtcgatc tggttgtcga
     2581 tcgtttccag ataaccgctt tcaagcgact tggtgttggc ccggtcataa gcagtcaccg
     2641 acatcttcgt gcccgtatgc agcggtttca gaatcgcggt cagattgtct tcggaggtcg
     2701 tgaaaataac gctgatgggc tgcagttgcg tgatgaccac cacgccattc gtgtcgccgg
     2761 tcgtcacgta gttgcccgga tcgacctgcc gcaagccgac acgacccgac accggtgcag
     2821 tgatgcgcgc ataggtcaga tcgagtttgt aggtatccac attcgcctgg tccgacttga
     2881 ccgtcccctc gtactgctgg acgagcgacg cctgcgtgtc cacttgctgg cttgcaatcg
     2941 agtcttgcga gagcagcatt tggtagcgct tcaggtcgag gcgggcggtc tgcagcagcg
     3001 cctggtcttt cgcgagcgtg ccttgtgcat tgcgcaacga gatctcgtag ggacgagggt
     3061 cgatctgagc caggacgtca cccttcttga ccatttggcc ttcctggaag gcgacgtcct
     3121 gcagcgtgcc gttgagctgc gtcttgactg tcactgacgc gagcggcgtt accgtcccga
     3181 gcgagttgat caccaccggc atttcgcctt gcgtgaccgt cgcgacatgc acgggttgcg
     3241 gcggagccgc catgcctggg ccaccgccac cacgccgacc gccgcctgcc tgccgcgctt
     3301 gctgcgagtt atccgcacca ccacggttcc acggatgcca tgcgaacagg cccgccacga
     3361 tcaggatcgc gacgacgatc ca
//
LOCUS       DATGBK010001755         2171 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_67615, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001755 DATGBK010000000
VERSION     DATGBK010001755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67615"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(355..1020)
                     /locus_tag="VKJ77_24690"
     CDS             complement(355..1020)
                     /locus_tag="VKJ77_24690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HMC48538.1"
                     /translation="MNIPSHAPLHLLHQVPHGTLATHSREPRGFPYPTALPFAPTSRH
                     VPMVLISHLAEHTRNLQLDARAGFLITQTASDSILEGQRLTMLGSFSPAPPESVDELS
                     SRYLRYHPDAARYLELGDFTFWIMSLERMRYIGGFGAMGWLDATALDPLEPLSEQNEL
                     RLLELFADSPARPAELELMGIDKYGCDLRTPGARNRFTFDKPKQTRAELNAALIDCIE
                     RHR"
     gene            1257..>2171
                     /locus_tag="VKJ77_24695"
     CDS             1257..>2171
                     /locus_tag="VKJ77_24695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48539.1"
                     /translation="MYRRLPAAKRERARYATMAVFFIAGMLYASWGVHVPTVRDKFHL
                     SPGSLSIALLAVAVGSIVAMLTNAPWIARVGTRRACLAGGIGMTICGALILVAPFYWL
                     LLVVLALFGFSMATLDVAMNAEASAVEEALERPIMSSLHGMFSVGGMAGAAAGGALLA
                     HGMPPVAHLVLASVVSLIVLLVSMPAVLPHVPHAEHVDGGRSSSNRWRSRALWALGGM
                     ALVALVAEGAMYDWATVYMRDVVLATPALSSTAYAAFTGGMAAGRFGGDAVRARFGAP
                     QLIFASAALAFIGMVAALLLPDAVVTLAG"
BASE COUNT          438 a          630 c          645 g          458 t
ORIGIN      
        1 gcagtgtacg agtcgttgcc cgttccggtt ataacgttaa gcctctcaat gaatcgcaga
       61 ttaacacaac taggattctg cgcacgtttc tacgctgtcg atttaaatca gttcagtcga
      121 acgagcgtcc gtaacaattc gtgatattcc gtgaaagttg cagaaattac gcattcatct
      181 tacttacatc gttaaattaa cccacaaagt ctttcatgga atgaaaataa cccgaaacgc
      241 attggctaaa acttccatcc cgtgcgagtt tgcccaaact ctctcatcgc cgtaacgcca
      301 tctcgtaatt tagcgacata aggacacgta tcgggcaatc acctgttcag acaatcacct
      361 atgccgttca atacaatcga tcaacgcggc attcagttct gcgcgagttt gtttcggttt
      421 atcgaaggtg aaacgattgc gcgctccggg agtccgcaga tcgcacccat atttgtcgat
      481 acccattagt tcaagttccg ccggccgtgc gggagaatcg gcaaataatt ccagcagccg
      541 aagctcattt tgctcggata acggttcgag tggatcaagc gccgttgcgt ccagccaacc
      601 cattgcacca aagccgccta tatacctcat gcgttcgagc gacatgatcc agaacgtgaa
      661 gtcgcccaat tcgagataac gggcggcatc cgggtgatat ctgagataac gactggacag
      721 ttcatcgaca gattcaggcg gtgccggaga aaacgagcca agcatggtaa gccgctggcc
      781 ttcgagaatg gaatcgctcg ccgtttgggt aatcaggaaa cccgcgcgtg cgtccagttg
      841 cagattgcgc gtgtgttcgg ccagatggct aatgagcacc attggcacgt gacgggaagt
      901 cggcgcgaac ggtaatgcgg tcgggtaagg aaaaccgcgc ggttcacgcg agtgcgtggc
      961 aagcgtgccg tgcggcactt gatgcaacag atgcaacgga gcatgcgacg ggatattcaa
     1021 agcaggacct cacgagagaa ctcaccagcg gccaggcaag tgaaccaaat aagagcagcg
     1081 ggctgccttt gcgatcttaa agcactaaaa ccaggtccgt ccgcaacccg atagaattga
     1141 aagcttcgcc ggccaacgaa aggaccggcc gttaaaacaa gaaagcaaag agagcaattc
     1201 ctgtgtccga atctgtctca agtgcccgtg ccgtcgggca cgacaccccg aacgccgtgt
     1261 atcggcggct tcctgcggca aaacgcgagc gtgcgcgcta cgcgaccatg gccgtgtttt
     1321 tcatcgccgg gatgctgtac gcctcctggg gcgtgcacgt gcccacggtg cgcgacaaat
     1381 ttcacctgag ccccggctcg ctctccattg cgctgctggc ggttgccgtc ggctcgattg
     1441 tcgcgatgct cacgaacgct ccgtggatcg cgcgcgtcgg cactcgccgc gcgtgcttgg
     1501 ccggcggtat cggcatgacg atttgcgggg cgcttatcct cgtcgcacct ttctactggc
     1561 tgctgctggt cgtgctggcg ctgttcggct tcagcatggc cactctcgat gtcgcgatga
     1621 acgcggaagc cagcgccgtt gaagaagcgc tcgagcggcc catcatgtcg tcgctgcacg
     1681 gcatgttcag tgtcggcggg atggccggcg cggccgccgg cggcgcgttg cttgcgcacg
     1741 gcatgccgcc ggtcgcgcat ctggtgctcg cgtcggttgt gagcttgatc gtgctgctgg
     1801 tgtcaatgcc cgccgtgctg ccgcacgtcc ctcacgcgga gcatgtagat ggcggacggt
     1861 catcgtcgaa tcgctggcgc tccagggccc tgtgggcgct cggcggcatg gcgttggtcg
     1921 cgttggtcgc cgaaggggcc atgtacgact gggcaacggt ctacatgcgc gacgttgtgc
     1981 tcgccacacc cgcattgtcc agcacggcct acgcggcctt cacaggcggc atggcggccg
     2041 gtcgtttcgg tggcgatgcg gtgcgtgccc gcttcggcgc gcctcagctc atcttcgcga
     2101 gcgcggcgct ggcgtttatc ggcatggtgg cggcgctgtt actgcctgac gcggtcgtca
     2161 cgctcgcagg t
//
LOCUS       DATGBK010001756         1773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_252162, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001756 DATGBK010000000
VERSION     DATGBK010001756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252162"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..246)
                     /locus_tag="VKJ77_24700"
     CDS             complement(<1..246)
                     /locus_tag="VKJ77_24700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48540.1"
                     /translation="MQDSQPTTKHYSTQFNGIHSDLQRGQGYIHPITLGQVRGGYVYY
                     YTHYEYMYADGHVEQDDIPWPYVFPVNHDLFAMHVHEI"
     gene            complement(367..762)
                     /locus_tag="VKJ77_24705"
     CDS             complement(367..762)
                     /locus_tag="VKJ77_24705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48541.1"
                     /translation="MITSRNPPRYRKLLALALALSIIVHFFGGYFLTRFVRYMGEIAD
                     RGRAGEPPKTSDIITIEREKPKPPAPTAPPAVAKTEPVVPVVPQLPRPKVIAPPPAAA
                     PHQRVARSLPKTHHEVAHIVVHAPRQEAK"
     gene            790..1566
                     /locus_tag="VKJ77_24710"
     CDS             790..1566
                     /locus_tag="VKJ77_24710"
                     /inference="COORDINATES: protein motif:HMM:TIGR00010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HMC48542.1"
                     /translation="MMDTHAHVHSREFDEDRDAMLARAREAGVETIVTVGCDLDDSRL
                     ALETAETYGLLATIGIHPHEAKDAPADIAAAFDELRTIGGARVVAIGETGLDFHYNHS
                     PVADQHRVLIAQLAYARACGLPVVFHQREAMNDFFAIMREHFDPGTMSGVIHCFTGNA
                     AEATTFVEEFGLKLGIGGVVTFKTAEPLREAIRAVGINALILETDCPYLAPIPFRGKR
                     NEPAFITKTLERVAEVLGRETAEVASITDRNARALFAREV"
     gene            1576..>1773
                     /locus_tag="VKJ77_24715"
     CDS             1576..>1773
                     /locus_tag="VKJ77_24715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48543.1"
                     /translation="MSILEDQHTNIGVHDEQPHNNKRCLAFTGKEAARIVEDPTQISE
                     LLKDEATFVWLDLAEPTAEDLR"
BASE COUNT          364 a          495 c          548 g          366 t
ORIGIN      
        1 aatctcgtga acgtgcatcg cgaataagtc gtgattgacc gggaagacgt acggccacgg
       61 aatatcgtct tgctcgacgt gaccgtcggc atacatgtat tcgtaatgcg tgtaatagta
      121 tacatatccg ccgcgcactt gtccgagtgt gatcggatgg atatatcctt gtccgcgctg
      181 caagtcggaa tggattccgt taaactgcgt gctgtaatgc ttggtcgtgg gttgggaatc
      241 ttgcacttgg tccgtgaccg cttttatgtc cgtgcgagaa tccgcaatcg tcttggaaaa
      301 cttgctttcg atctgagcga tttgctcgcc cgatagttgc gacgtttcgg gccggccttc
      361 gccccgctat tttgcttctt gccgcggcgc gtgtacgacg atgtgagcaa cctcatggtg
      421 agtcttgggc aacgatcggg ccactcgctg atgcggcgcg gcggcaggcg gcggcgcgat
      481 cactttgggt cgcggcagct gggggacgac gggcacgacc ggttcggttt ttgcaacagc
      541 cggcggggcc gtaggcgccg gcggcttcgg tttctcgcgc tcgatcgtaa tgatatccga
      601 cgtcttgggc ggctcgcccg ctcggcctcg gtccgcgatc tcgcccatat agcgcacgaa
      661 ccgcgtaaga aaatagcccc cgaaaaagtg aacgatgatc gagagggcga gggcgagcgc
      721 aaggagcttg cggtaacgtg gagggttgcg ggaagtaatc atgcggcggg cggaagccta
      781 gtcttcatca tgatggacac tcacgcccac gtgcacagcc gcgaatttga cgaagaccgc
      841 gacgccatgt tggcccgggc tcgcgaagcc ggcgtggaaa cgatcgtgac cgtcggatgc
      901 gacctcgacg atagccgcct cgccttggag actgctgaga cctacgggct gctcgcgacc
      961 atcggtattc atcctcatga agccaaagat gcacccgccg atattgccgc agcattcgac
     1021 gagctgcgca cgattggcgg ggcgcgggtg gtcgcgatcg gcgagaccgg gctcgacttt
     1081 cattacaatc atagtccggt cgcggatcag caccgcgttc tcatcgcaca gctcgcatat
     1141 gcgcgagcgt gtggtctgcc tgttgtcttt catcagcgcg aagcgatgaa tgattttttc
     1201 gcgatcatgc gcgagcactt cgacccgggg acaatgtccg gcgtcattca ctgcttcacc
     1261 ggcaacgcgg ccgaggcgac gacgttcgtt gaagagttcg gcttgaagct cggcatcggg
     1321 ggcgtagtaa cgttcaagac cgccgaaccg ctgcgagagg caattcgcgc agtcggtatc
     1381 aacgcgctaa ttttggaaac cgattgcccg tatcttgcgc cgatcccatt tcgcggcaag
     1441 cgcaacgaac cggcatttat tacaaaaaca ttagaacgcg tggcggaagt gctgggacgg
     1501 gaaaccgccg aagtcgcttc aatcaccgat cgcaacgcgc gagccctgtt cgcgcgtgag
     1561 gtataagccg acgtaatgag tattctcgaa gaccagcata cgaacatcgg cgttcacgat
     1621 gagcaaccgc acaacaacaa acgctgccta gcatttacgg ggaaagaggc ggcgcgcatc
     1681 gtcgaggatc cgacgcagat cagcgaattg ctcaaggacg aggctacgtt tgtgtggctc
     1741 gatctcgcgg aaccgaccgc cgaagacctt cgg
//
LOCUS       DATGBK010001757         1760 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_44528, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001757 DATGBK010000000
VERSION     DATGBK010001757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44528"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..998)
                     /locus_tag="VKJ77_24720"
     CDS             complement(<1..998)
                     /locus_tag="VKJ77_24720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016348275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid ammonia-lyase"
                     /protein_id="HMC48544.1"
                     /translation="MAEHDPSGKIGRLGNVGELACTAEEPIVIGGRRLTIEEVVSIAN
                     QRTPVVLSADPAWRARIERGADFLRRHLLQGATVYGVNTGYGDSCVVDVPMELVEVLP
                     LQLLRYHGCGMGQHLDDAQTLAVIAARLNSLAYGFSGVRHVLLERLADLINHRVLPRI
                     PSEGSVGASGDLTPLSYVAAALVGERDVRFRDELCDARSVWAKLGHTPLTLAPKEGLA
                     LMNGTAVMTGLACLAFVRAAHLTRLAARLTALSTVALDGRAAHFDPMLFEVKPHAGQA
                     EAAAWIREDLAGREDTPGHRLQDRYSIRCAPHVIGVARDALLWVRRDVENELNSAN"
     gene            complement(985..>1760)
                     /locus_tag="VKJ77_24725"
     CDS             complement(985..>1760)
                     /locus_tag="VKJ77_24725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HMC48545.1"
                     /translation="APQDGTPRPGWWSAYKHMLAFARSGFDKLAAWSGRVNMGDVKFD
                     DPAAFEALSASGRGALVIGAHLGNLEMTRALATRGAYAKVTAVVYTEHARRFNSVLAS
                     ANSEFAQRLVEVSDFGPETAMMMQDRVEAGELLVIVGDRVPAHDSGRTTEAQFLGSTA
                     PFAQGPYVLAHALGCPVYLFFCLKEEQGYRLYFEPFAERIELPRRERAQHLAAWAQRY
                     ASRLEHYCRKAPYQWFNFFDFWARPNGNANGTGGANGRT"
BASE COUNT          335 a          581 c          533 g          311 t
ORIGIN      
        1 tcgttcgcgc tgttcagttc gttctcgaca tcgcgacgca cccataacag cgcatcgcgc
       61 gcaacgccga tcacgtgagg cgcacagcgg attgagtagc gatcctgaag gcgatgcccc
      121 ggcgtgtcct cacgtccagc gagatcttcg cgaatccatg ccgctgcttc ggcctgcccc
      181 gcgtggggtt tgacttcgaa cagcatgggg tcgaagtgcg cggcgcggcc atcgagcgcg
      241 acggtggata acgcggtcaa gcgtgctgcg agccgcgtca ggtgagcggc acggacgaac
      301 gcgaggcacg cgaggcccgt catgaccgcc gtgccgttca tcagcgcgag cccttctttc
      361 ggcgcgagcg tgagtggtgt gtggccaagt ttggcccaga cgctgcgggc atcgcatagc
      421 tcgtcgcgga accgcacgtc gcgctcgccc accagcgcgg ccgccacgta ggacaacggc
      481 gtcaggtcac cgctcgcccc caccgacccc tccgatggaa tccgcggcag cacgcgatga
      541 ttgatcaggt cggcgagccg ttcaagcagc acgtgccgta ctcccgagaa cccgtatgcc
      601 agcgaattga gccgtgcagc gatgacggcg agcgtctgcg catcgtcgag atgctggccc
      661 atgccgcagc cgtgataacg cagcaattgc aggggcagga cttcgaccag ttccatgggt
      721 acatcgacca cgcacgagtc gccgtaaccg gtgttgacgc catagacggt tgcgccctgc
      781 aaaagatggc ggcgcaggaa gtcggcgccg cgttcaatcc gcgcgcgcca cgccggatcg
      841 gcactcaaga cgacaggcgt tcgctgattc gcaattgata caacctcttc aatcgtcagc
      901 cgcctgccgc cgatgacgat cggttcttcg gctgtacaag ctagctcgcc tacgttgccg
      961 agacggccta ttttgccgct cggatcatgt tcggccattc gcgcctccag tgccattagc
     1021 attgccattg ggacgcgccc agaaatcgaa aaaattgaac cattgatacg gcgccttgcg
     1081 gcaatagtgt tcgagacgcg acgcatatcg ctgtgcccac gccgcgagat gctgcgcccg
     1141 ttctcggcgc ggcaactcga tgcgctccgc aaacggctcg aaataaagtc tgtatccctg
     1201 ctcttccttc aggcagaaaa acaggtacac cgggcaaccg agcgcatggg ccagcacgta
     1261 ggggccttgc gcaaacggtg ccgtcgagcc aagaaactgc gcctcggtcg tgcggccgga
     1321 atcatgtgct ggcacgcgat cgccgacaat caccagcagc tcgcctgcct ccacccgatc
     1381 ctgcatcatc atcgccgtct cggggccgaa gtcgctgacc tcgacaagac gttgcgcgaa
     1441 ctcgctattt gccgatgcca gcacgctgtt gaaacggcgc gcatgctccg tatagacaac
     1501 agcggtgacc ttcgcatacg cgccacgcgt ggcaagcgcc cgggtcatct cgaggttgcc
     1561 gagatgcgcc ccgattacga gtgcgccacg gccactggcg ctcaatgctt cgaacgcggc
     1621 cggatcgtcg aacttcacgt cgcccatgtt gactcgcccc gaccatgcag cgagtttatc
     1681 gaagccggat cgcgcgaatg ccagcatgtg tttgtatgcg gaccaccacc ctggccgggg
     1741 cgttccatct tgcggagcgg
//
LOCUS       DATGBK010001758         1610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_229653, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001758 DATGBK010000000
VERSION     DATGBK010001758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229653"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..982
                     /gene="mltG"
                     /locus_tag="VKJ77_24730"
     CDS             <1..982
                     /gene="mltG"
                     /locus_tag="VKJ77_24730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HMC48546.1"
                     /translation="VAVVVAGALVGGTFKWANSPVDLASPELDITIKSHSTLRSVALQ
                     LDRGGAHVQQQLFVLMTRVLGLSSQLKSGNYAFKEGITPYEMLQKIARGDVNEYVATV
                     IEGWTFQKMRNELDGNPALQHDTAGMTDTDLLKAIGAPDDVIARVSAEGLFFPDTYLF
                     DKGTSDIAVYKRAYKLMQQRLAEAWDTRAQNLPYKTPYEALIMASIVEKETGRAADRP
                     LVAAVFANRLRIGMPLQTDPSVIYGLGSAYGGRLRKKDLQTDTPYNTYTRMGLPPGPI
                     ALPGVAALAATVNPASSAALYFVSRGDGSSFFSDNLGDHNRAVDKYIRGQ"
     gene            982..1602
                     /gene="tmk"
                     /locus_tag="VKJ77_24735"
     CDS             982..1602
                     /gene="tmk"
                     /locus_tag="VKJ77_24735"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HMC48547.1"
                     /translation="MVRGRFITFEGIDGAGKTTHLAWFRQRVEDKIAATGRSVVITRE
                     PGGTSLGESLRELLLNQPMDLETEALLMFAARREHLAQIIEPALARGDWVLSDRFSDA
                     TFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPTNVASERRGAVRSPDKFESE
                     SDSFFGRTRAEYLRRAAESPERFVIIDATQSIADIQKQLEVVIANI"
BASE COUNT          318 a          487 c          518 g          287 t
ORIGIN      
        1 cgtcgcggtc gtggttgccg gtgcgctcgt cgggggcacg ttcaaatggg cgaatagccc
       61 ggtggacctc gcctcacccg aactcgacat caccatcaaa tcccacagca cattacgcag
      121 cgtggccctc cagctggacc gcggcggcgc gcacgtccaa cagcagttgt tcgtgctgat
      181 gacgcgcgtg ctcgggctgt catcgcagct caagtccggc aactacgcgt tcaaggaggg
      241 catcacgccc tacgagatgc tgcagaaaat cgcccgcggc gacgtcaacg agtacgtggc
      301 gaccgtgatc gaagggtgga cgttccagaa aatgcgcaac gaactggacg gcaatccggc
      361 gctgcagcac gacacggccg gcatgaccga caccgacttg ctgaaggcaa tcggcgcgcc
      421 ggacgacgtg attgcgcggg tgagcgcgga gggcctgttt ttccccgaca cctatctctt
      481 cgacaaaggc acgagcgaca tcgctgtcta caaacgggcg tacaagctga tgcagcagcg
      541 cctggccgaa gcctgggata cccgtgcgca gaatttgccg tacaagacgc cttacgaggc
      601 gctgatcatg gcgtcgattg tcgaaaagga aacggggcgc gccgccgacc ggccgctggt
      661 cgctgccgtg ttcgcgaacc ggttgcgcat cggcatgccg ctgcaaacgg acccttcggt
      721 gatctatggc ctgggttcgg cctacggcgg ccggctgcgt aaaaaggacc tgcaaaccga
      781 cactccgtac aatacctaca cgcgcatggg cctgccgccc ggtccgatcg cgttgccggg
      841 cgtcgcggcg ctcgcggcga cggtcaatcc tgcatccagc gcggcgctgt atttcgtgtc
      901 gcgcggcgac ggcagcagct tcttttcaga caatctcggc gaccacaatc gggccgtcga
      961 caagtacatc cggggacaat gatggtgcgc ggcagattca tcacgtttga aggcattgac
     1021 ggagcgggca agacgacgca cctcgcgtgg tttcgtcagc gcgtggaaga caagatcgca
     1081 gccacgggcc gttcggtcgt gatcacgcgg gaacccggcg gcacgtcgct gggagaaagc
     1141 ctgcgagaat tgctgctcaa ccagccgatg gacctcgaaa ccgaggcgtt gctgatgttc
     1201 gccgcacgcc gggaacatct ggcgcagatc attgagccgg cgctcgcgcg cggcgactgg
     1261 gtgctgtcgg accgtttctc cgatgccacc tttgcgtatc agggcggcgg ccgcggtttg
     1321 ccgcgtgaca agctggaagc gcttgagcgc tgggtgcagg gtggttttca gccagacctg
     1381 accgtgctct tcgacgtacc gacgaacgtg gccagcgaac gacgcggcgc ggttcgctca
     1441 cccgacaagt tcgagagcga atcggattca tttttcggcc gcacgcgggc cgagtatttg
     1501 cgccgggcgg cggaatcgcc ggagcgattt gtgataattg atgctacgca atcgatagcg
     1561 gatatccaga aacaacttga agtagtgatc gcaaatatct gatttttaat
//
LOCUS       DATGBK010001759         2204 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_44551, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001759 DATGBK010000000
VERSION     DATGBK010001759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44551"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1243)
                     /locus_tag="VKJ77_24740"
     CDS             complement(<1..1243)
                     /locus_tag="VKJ77_24740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HMC48548.1"
                     /translation="MSTQRQSSLPAPRMSTGISGLDNILGGGLTPNRVYLIEGSPGAG
                     KTTLALQFLLKGAELGEGGLYITLSETRSELLAVADAHGWNVDALSIIELLSDEGLDP
                     EYEQSILHPAEVELGETVENVMRQVESLKPVRIVLDSLSELRLLSQNPLRYRRQILAL
                     KRYFATRDCTVYLLDDNTSDPNDLQLHSIAHGVISLDQLVHDYGGARRRVRVAKMRGI
                     KFREGFHDFTLETGGIDVYPRLVAAEHHAEFARAPVSTGSEGLDAMLGGGLVPGTNAL
                     LIGPSGVGKTTTVVCCLLAALKRGERCIYYLFDETLGTLMMRSRSLGMDLSSYLDNGL
                     LTLRQIDPAEMSPGQFTSDVREAVEDESVTYVAIDSLNAYLQAMPGERYLLLQMHELL
                     GYLNQRGIVTMLVLGQHGIVGE"
     gene            1480..>2204
                     /locus_tag="VKJ77_24745"
     CDS             1480..>2204
                     /locus_tag="VKJ77_24745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HMC48549.1"
                     /translation="MRVKHRVWLAASLAWLGSQPAFASETIETAQPSTLISDVHTFVV
                     AEDGSLTEDDETTLRANTPAGVGEIAQRYIWFDKSTSTIDISDAYSLGPDGIKHIVAP
                     DQIREIQEPRSAGAPTFEDSRLKAVVFPGVNAGSIVHLRFHKTQSKPVIARQFDYFVE
                     PGRGPVENQRLIFDLPADKPLYADARGYIAVPPVTQGGRTRYEFDYSRAHYDRVEAGS
                     VGYAQYGDRLMVSTFPDYRSFAA"
BASE COUNT          436 a          663 c          685 g          420 t
ORIGIN      
        1 cctcgcccac aatgccgtgc tgcccgagca cgagcatcgt tacaatgccg cgctggttga
       61 ggtagccgag caactcatgc atttgcagca gcaggtagcg ctcgccgggc atcgcctgaa
      121 gatacgcatt caggctgtcg atggcgacat aggtcacgct ttcgtcttcc actgcctcgc
      181 gcacgtcgct ggtgaactgg ccgggcgaca tctcggcggg gtcgatctgg cgcaaggtca
      241 gcagaccgtt gtcgagatag ctcgatagat ccatgccgag cgacctcgag cgcatcatca
      301 gcgtgccgag cgtttcgtcg aagagatagt agatgcagcg ctcgccacgc ttgagtgccg
      361 ccaggaggca acacaccacg gtcgtggtct tgcccacgcc ggacggcccg atcagcagcg
      421 catttgtgcc gggaaccagg ccgccgccga gcatggcgtc gaggccctcc gacccggtcg
      481 ataccggtgc tcttgcgaat tccgcgtgat gttcggcggc caccaggcgc ggatagacat
      541 caataccgcc cgtctccagc gtgaagtcgt ggaatccttc tcgaaacttg atgccgcgca
      601 tttttgccac gcgcacgcgg cgacgcgcgc cgccgtaatc gtggacaagc tggtcgaggc
      661 tgatcacacc atgcgcgatg ctgtgaagct gcaggtcgtt ggggtcggag gtgttgtcgt
      721 cgagcaggta caccgtgcaa tcgcgcgttg cgaaatagcg cttgagcgcg aggatctggc
      781 gccggtagcg caacgggttc tgggacagca gccgcagttc cgacaagcta tccagcacga
      841 tccgcacagg tttgaggctt tcaacctggc gcatcacgtt ttcgaccgtc tcgcccaact
      901 ccacttccgc cgggtgcagg atggactgct cgtactcggg gtccagccct tcgtcggaga
      961 gcagttcgat gatggacaac gcatcgacat tccagccgtg tgcatcggcg acggctagca
     1021 gctcagagcg cgtctcagag agggtgatat acaggccccc ttcgcccagc tctgcgccct
     1081 tcagtaaaaa ttgcagtgcg agggtcgttt ttccagcccc cggagaccct tcgataaggt
     1141 acacacgatt cggcgtcagt ccgccgccca ggatgttgtc aagcccgcta atgcccgtcg
     1201 acatgcgcgg tgcgggaagg gacgactgac gttgagtgct catagtagga ataggattca
     1261 ataggcgtag cggtctcgcg gggaacacag gcatggtcgg gtctcgctac cgatcagccg
     1321 ccatataggt caggtaaaag caaagaacag acctgttcag cttggcgcgc aggtagtccg
     1381 tggcaaccgg cgctcatgcg atgacgcgtg agataccggg tgagatacga taagccgttg
     1441 aacttgcaag taaaaccgcc ctccatgagt tcgagatcga tgcgtgttaa acaccgtgtg
     1501 tggctggcgg cttcgctggc gtggttagga tcgcagccgg cattcgcctc ggagaccatc
     1561 gaaaccgcgc agccgtccac gctgattagc gacgtccaca cattcgtcgt ggcggaagac
     1621 ggctccttga cggaggacga tgaaaccacc ttgcgcgcaa acacgccggc gggtgtcggt
     1681 gaaatcgcgc aacgctatat ctggttcgac aaatcgacgt caaccatcga cataagcgat
     1741 gcctactcgc tcggccccga cggcatcaaa cacatcgtgg cgcccgatca gatccgcgag
     1801 atccaggagc cgcgttcagc gggcgcccca acgtttgagg actctcgcct gaaagcggtg
     1861 gtctttccag gggtgaacgc gggatcgatc gtgcatctgc ggtttcataa gacgcagtcg
     1921 aaaccggtca tcgcgaggca gttcgattat ttcgtcgagc ccggccgtgg tccggtggaa
     1981 aaccagcgct tgatcttcga cctgcccgcc gacaaaccgc tctatgccga tgcgcgcggt
     2041 tatatcgccg tgccgccggt tacacagggt ggccgcacgc gctacgagtt cgactacagc
     2101 cgggctcatt acgatcgggt ggaagcgggc tcggtcggtt acgcgcagta cggcgaccgg
     2161 ctgatggtgt cgacgtttcc ggactaccgg agctttgccg cgag
//
LOCUS       DATGBK010001760         2680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_113579, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001760 DATGBK010000000
VERSION     DATGBK010001760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113579"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            98..604
                     /locus_tag="VKJ77_24750"
     CDS             98..604
                     /locus_tag="VKJ77_24750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HMC48550.1"
                     /translation="MSFTVQQSTGSKAAQYDELIAQARSLLSDETDRVANAANFSALV
                     YHALPDLNWSGFYFFDGVELVVGPFQGKPACVRISLGKGVCGTAAQTRLTQVVQDVHE
                     FPGHIACDSASQSEIVVPLVARDGSLAGVWDVDSPSVGRFDADDAKGMEALCQVFMEL
                     AWEPRTSA"
     gene            complement(610..1569)
                     /locus_tag="VKJ77_24755"
     CDS             complement(610..1569)
                     /locus_tag="VKJ77_24755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC48551.1"
                     /translation="MSEVQPAQVTIHAKDGYALTGQIWRHHNAPEASDASEPRPVVII
                     NPATSVRCSYYSRFAAFLHTHGFDVITYDYRGIGGSRPPSLRSLNAGWLDWGRLDFEA
                     VLQLASSTFPRQPVQVVAHSIGGVLVGLAPSNHLIERVFTMGAQFAHWRDYARHKRFG
                     MLIKWHAIMPALTAALGYFPGGTLGWMEDTPRGVVRDWIAPQPRFEDAFRHGPHALTE
                     AERATLVKGFAALRGPMLALSVTDDEFGTVSAIERLLAYFRNSQTTHLRIPPEEMGYR
                     EIGHFAFFHSRFETSLWQIPLEWLKARSVRADLAGFVVKTNAR"
     gene            complement(1650..2579)
                     /locus_tag="VKJ77_24760"
     CDS             complement(1650..2579)
                     /locus_tag="VKJ77_24760"
                     /inference="COORDINATES: protein motif:HMM:NF015509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HMC48552.1"
                     /translation="MIGFFLLSLPVFGVIGVGWAATRAHLLASGALDALNVFSFRFAL
                     PALVLRLIAGQPLRQSFNPGFYAGYLASGAAVFMLVLGVSRLTAASTVAAAGAHATTA
                     TVSNLGFLGPPLMLAFFGERGAGPLAMAILAEIMVLLSLGGVLMGANGDARRSIGSQI
                     LRGTVFNPVVTAIVLGAMLAGTGLALPEPITRFLAFLGGAAGPTALFALGGALALQRL
                     DRSTAVAACLISLVKLVVYPLLTWIVLGHVMTLEPFWVQAGVLIACLPSAGNIYVLAQ
                     RYDADPPRVSAAILLSTIASVVTFPCAAWLVLR"
BASE COUNT          565 a          832 c          809 g          474 t
ORIGIN      
        1 gcatgtaagc cggatctggc gcgccgtgct atggtcgaaa gacttacttc tttctaccgc
       61 catgacctag ccggtcatgg cgcacacact atccatcatg tccttcaccg ttcaacaatc
      121 cactggttcg aaagctgcgc aatacgacga actcattgct caggcgcgct cgcttctcag
      181 cgatgaaacc gatcgcgtcg ctaatgccgc caacttctcg gcgctggtgt atcacgcgct
      241 gcccgacctg aactggagcg gtttttattt cttcgatggt gtcgaactcg tcgtcggccc
      301 cttccagggc aaaccggcgt gcgttcgcat ctcgcttggc aaaggcgttt gcggtaccgc
      361 cgcgcaaacc cggctcaccc aggttgtaca ggacgttcac gagttccccg gacacattgc
      421 gtgcgactcg gcatcgcaat cggagattgt tgtgcctctg gttgccaggg acggtagcct
      481 ggccggcgtc tgggatgtcg acagcccttc ggtcggccgc ttcgacgcgg acgatgccaa
      541 aggcatggaa gcgctatgcc aggtattcat ggagctggcg tgggagccgc ggacgtctgc
      601 gtgaggccct catcgggcgt tagtcttgac gacaaacccc gcaaggtcgg cacgcactga
      661 gcgagccttt agccattcga gcgggatctg ccatagcgac gtttcgaagc ggctgtggaa
      721 aaacgcaaag tggccgatct cgcgataacc catctcttcg ggcgggatac gcagatgggt
      781 ggtctggctg ttcctgaagt aagcaagcaa acgttcgatg gccgataccg tgccaaattc
      841 gtcatcggtt acgctgagtg cgagcatggg tccacgcaac gcggcaaaac ctttgaccag
      901 cgtcgcgcgc tctgcttccg tcaaggcgtg cggaccgtgc cggaacgcat cttcgaacct
      961 gggttgcggc gcgatccagt cgcgcaccac gccgcgcgga gtgtcttcca tccagccgag
     1021 cgtgccaccg ggaaaatagc caagtgccgc tgtgagtgcc ggcatgatcg catgccattt
     1081 gatcagcatg ccgaatcgtt tgtgacgggc gtagtcgcgc caatgggcga attgcgcgcc
     1141 catggtgaaa acgcgctcga tcagatgatt cgacggcgcc agtcccacta acaccccgcc
     1201 tatgctatgg gcgacgacct gtacgggctg gcgaggaaac gtgctggatg ccaactgcaa
     1261 taccgcttcg aaatctaggc gtccccagtc caaccatcct gcattcaagc tgcgaagcga
     1321 cggcgggcga gatccgccaa tgcctcgata gtcataggtg atgacatcga atccgtgcgt
     1381 gtgcaggaac gcggcgaagc gcgagtaata gctgcatcgc accgatgtgg ccgggttgat
     1441 gatgaccacg ggcctgggtt cgctagcatc ggaagcttcg ggcgcgttgt gatggcgcca
     1501 tatctggcct gtcagcgcgt agccgtcctt ggcatgtatc gtgacctggg caggctggac
     1561 ctcactcatt tttctctctc ttgggcgagt tcgtcgataa cttgaatata ccgttgttcc
     1621 tagatcttct gcgcagggtc acgcgagcct tagcgaagca cgagccacgc ggcgcacgga
     1681 aaggtcacta cgctggcgat ggtagacaga agaattgctg ccgacacccg cggtggatcg
     1741 gcgtcatacc gctgagcgag cacatagata ttcccggctg acggcaagca cgcaatcaga
     1801 acgcccgctt gcacccagaa cggttcgagc gtcatcacgt gtccgagaac aatccacgtg
     1861 agcagcggat acacgacaag tttcacgaga ctgatcaggc atgcagcgac agcggtgctg
     1921 cggtcaagac gctgcaaggc gagagcgccg cccagcgcaa agagcgcggt tggacccgcc
     1981 gcgccaccaa ggaacgccag gaagcgcgtg atcggctcag gcagcgcgag tcccgtgccc
     2041 gccaacattg cgcccaacac gattgccgtg acaaccggat tgaacacagt gcctcgcagg
     2101 atctgggaac cgatgctgcg cctggcgtcg ccattcgcgc ccatgagcac gccgccgagg
     2161 gagagaagca ccatgatctc cgccaggatc gccattgcca gcggacccgc tccacgctcg
     2221 ccgaagaagg cgagcattaa tggcggccca aggaaaccca ggttgctcac cgtcgccgtg
     2281 gtcgcgtgcg cgccggccgc cgcgaccgtg gatgcggcgg tcaaacgcga cacgcccaga
     2341 accagcatga acacggccgc gcccgacgca aggtagcccg catagaagcc aggattgaac
     2401 gattgacgca acggctgccc cgcgatgagc cgcaaaacga gcgccggaag cgcaaaacga
     2461 aacgagaaga cgttcagcgc atcgagcgcg cccgaggcca ggagatgcgc gcgcgttgcc
     2521 gcccatccca cgccaataac gccgaacacc ggcaggctga gcaggaagaa accaatcatt
     2581 cttgcaggcc gctgcgcgct tcaattgccc tgagcacggc aaccatgtcg gcttctccaa
     2641 ggccaagacc cagcgcttcg ccatagagcg cgtggcagac
//
LOCUS       DATGBK010001761         1711 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_136580, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001761 DATGBK010000000
VERSION     DATGBK010001761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136580"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VKJ77_24765"
     CDS             <1..359
                     /locus_tag="VKJ77_24765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006757738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HMC48553.1"
                     /translation="DALKSIPNPLVNAAVSVSSLAGITGSASGGMSIALAAMSDTFIK
                     GAEAAHIPLDVLHRVVAMASGGMDTLPHNGAVITLLAVTGLTHRESYRDIFAVTIIKT
                     LAVFFVIAVYYTTGLV"
     gene            502..1302
                     /locus_tag="VKJ77_24770"
     CDS             502..1302
                     /locus_tag="VKJ77_24770"
                     /EC_number="1.1.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003858 - 3-hydroxybutyrate dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HMC48554.1"
                     /translation="MTSSAATPLAGKTALVTGSTSGIGLGVATALAQAGANLVLNGFG
                     DSAVIQGAIAQIEQHGVKAVHHGADMSKSAEIEAMIAFAIEQFGAVDVLVNNAGIQHV
                     ATIDTFPVDKWDAIIAINLSSAFHTMRVALPKMRDSGWGRVINIASAHGLVGSVGKSA
                     YVAAKHGIVGLTKVAALENARTGVTVNAICPGFVLTPLVQKQIDDIATRDNISPDAAR
                     SKLLGEKQPSEQFVTPEQIGKLAVFLCSEGADEMRGAALQIDGGWTSQ"
     gene            1387..1620
                     /locus_tag="VKJ77_24775"
     CDS             1387..1620
                     /locus_tag="VKJ77_24775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008354254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48555.1"
                     /translation="MTAEHNRTEEARAMERIVNATRQVQTAFTALQGHFPPGGDGRPS
                     QMALQTFDAALQELEEAQAAFDTMLNDLFDGNR"
BASE COUNT          340 a          506 c          541 g          324 t
ORIGIN      
        1 gcgatgcgct caagagcatc ccgaatccgc tcgtgaacgc ggctgtctcg gtgagttcgc
       61 tggctggcat cacaggctcg gcatcgggcg gcatgagcat cgcgctggcg gccatgtccg
      121 atacgttcat caaaggcgcg gaagcggcgc acattccgct ggacgtgctg catcgcgtgg
      181 tagcaatggc gagtggcggc atggatacgc tgccgcacaa cggcgcggtg atcacgttgc
      241 tggccgtgac cggactgacg caccgcgagt cgtatcgcga catcttcgcc gtgacgatca
      301 tcaagacgct ggccgtgttt ttcgtgatcg cggtgtacta cacaaccggg ctggtttaag
      361 gcttttggtt ttttggcttc agcccttgca tcagcggctt ctgttaaaag ccgccgatgc
      421 atgccaccct ccgtgatccg catctggcac actttgcggc agccgctttc gcctcccttt
      481 cctccccaca ggacttccca catgacctca tccgcagcaa caccgctcgc cggcaaaacc
      541 gcgctcgtca ccggatcgac gagcggtatt ggccttggag tcgctaccgc gctggcgcaa
      601 gccggcgcga atctcgtgtt gaacggcttc ggtgactccg ctgtcatcca gggcgccatc
      661 gcacaaatcg aacagcacgg cgtgaaggcg gtgcatcacg gcgcggacat gtcgaagtcc
      721 gctgaaattg aagcaatgat cgccttcgcc atcgaacaat tcggcgccgt tgacgtgctc
      781 gtgaacaacg cgggcattca gcacgttgcg actattgata ccttccctgt agacaagtgg
      841 gacgcgatta tcgcgatcaa cctgagctcg gcgtttcata ccatgcgcgt ggcgttgccg
      901 aagatgcgcg acagcggctg gggccgcgtg atcaatatcg catcggcaca tgggctagtg
      961 ggctcggtgg ggaaatcggc ttacgtggcg gccaagcacg gcattgtcgg cctgacgaaa
     1021 gtggccgcgc tcgaaaacgc gcgcacgggc gtgacggtga atgcgatctg cccgggattc
     1081 gtgctgacgc cgctggtgca aaagcagatc gacgatatcg cgacccgcga caacatctcg
     1141 ccggatgctg cgcgctcgaa gttgctggga gagaaacagc cgtcggaaca gtttgttacg
     1201 ccggaacaga tcggcaagct ggccgtgttc ctgtgctcgg aaggcgccga tgaaatgcgc
     1261 ggagcggcgc tgcagattga tggcggatgg acgtcgcaat aatgtctgtg agtgcgtcga
     1321 taaccggagc gcgtgcctga cgtggcaacc gttggtacta tcggggttgt tagaacggag
     1381 actccgatga cggctgaaca caatcgaaca gaagaagcgc gggcgatgga gcgcatcgtc
     1441 aatgccacgc ggcaggtgca gaccgccttt acggcgttgc aggggcactt tccaccggga
     1501 ggtgatggcc ggccgtcgca gatggcattg cagacctttg acgccgcgct ccaggaactg
     1561 gaggaagcgc aagccgcgtt cgacaccatg ttgaacgacc tgttcgacgg aaaccgctag
     1621 aagggtttga tctgttcgca accgggatga cagcctggcc gcgaacggat ctgcaacccc
     1681 ctcaagcccc ccgcaatacc ggcaccacgg g
//
LOCUS       DATGBK010001762         2287 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_252258, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001762 DATGBK010000000
VERSION     DATGBK010001762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252258"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..731)
                     /gene="rhmD"
                     /locus_tag="VKJ77_24780"
     CDS             complement(<1..731)
                     /gene="rhmD"
                     /locus_tag="VKJ77_24780"
                     /EC_number="4.2.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011549800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050032 - L-rhamnonate dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnonate dehydratase"
                     /protein_id="HMC48556.1"
                     /translation="MSMPTIRHVRAFTVRGGGADYHDQGADHWIDDHISTPMGRYPEY
                     RQSRQSFGINVLGSLVVEIEASDGTVGFAVTTGGEIGAFIVEKHLARFLEGQRVTDIE
                     KMWDQMYFATLYYGRKGIVLNAISGVDLALWDLLAKVRKEPVFHLLGGPVRDELQFYA
                     TGARPDLAKEMGFIGGKMPLQHGPAEGEEGLAKNIAKLADMRSKVGDDFWLMFDCWMS
                     LDLNYATRLAHAAKEYGLKWLEEALP"
     gene            complement(759..2090)
                     /locus_tag="VKJ77_24785"
     CDS             complement(759..2090)
                     /locus_tag="VKJ77_24785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48557.1"
                     /translation="MSDTASAEEAVVGRVMRRLLPFLLLMYMLAFLDRANIGFAQKAL
                     QHDTGLSNAAFAFGAGVFFVGYALFEVPSNLLLHRVGAKLWMCRIMVTWGLVSAAMAF
                     AHTATMFYVLRFALGVAEAGFFPGIVYYLTHWFPQSARARALGVFYFGAPLAFIFGSP
                     LSGALLDLHGAFGFAGWQWLFLVEGVLASIVGVWASWYLDNDPSKARWLNATQRELLL
                     ARLSQDAQAASAHGPRGVLAALIDPRVLILSGVYFLIQMSVYGVIFYLPQQVAALLGA
                     NVGAKVGFVTAIPWLCAVLVTWFVPRYADRHGQHRWLAVLMLVVAGAGIAISGLAGQP
                     VISLIALCFAASGLIAAQPLFWTFPTHYLTGAAAAGAIALINSLGGLGGFVAPMVRTA
                     TERAYVSTSAGLVLLGFVAVLAALAIIVFVRPAHASVFPYDKPHDKRAKAS"
     gene            complement(2159..>2287)
                     /locus_tag="VKJ77_24790"
     CDS             complement(2159..>2287)
                     /locus_tag="VKJ77_24790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase"
                     /protein_id="HMC48558.1"
                     /translation="KIPMNRFLLPEEAASLILWLSSEDCAFSTASVFDLSGGRATY"
BASE COUNT          532 a          727 c          645 g          383 t
ORIGIN      
        1 ggcaacgctt cttcgagcca cttcaggccg tattccttcg ccgcgtgcgc gaggcgcgtt
       61 gcgtagttga ggtcgaggct catccagcag tcgaacatca gccagaagtc gtcgcctact
      121 ttcgagcgca tatcggcaag cttggcgatg ttcttcgcga gcccttcctc gccttccgcg
      181 ggtccgtgct gcaacggcat cttgccgcca ataaaaccca tctccttcgc caggtcagga
      241 cgtgcgccgg ttgcatagaa ctgcagttcg tcgcgtacag gtccgcctaa aagatgaaac
      301 accggctcct tgcgaacctt cgcgagcaga tcccacaatg caagatcgac gcccgaaatt
      361 gcattcagca caatgccttt gcgcccgtaa tagagcgtgg cgaaatacat ctggtcccac
      421 atcttttcga tgtcggtcac ccgttgacct tcaagaaaac gcgccagatg tttctccacg
      481 ataaacgccc cgatctcacc gccggtggtg accgcgaagc cgaccgtgcc atcgctcgct
      541 tcaatctcga caaccagcga accaagcacg ttgatgccga atgactggcg gctttgccta
      601 tactcggggt atcgccccat tggcgtggag atatggtcgt cgatccagtg atcggcgccc
      661 tggtcgtgat agtcggcgcc gccgccgcga acagtgaacg cgcgaacgtg gcggatggta
      721 ggcatggaca tgatcggact ccgttaaggt tctaatgttc aggacgcttt ggcacgcttg
      781 tcgtggggct tgtcatacgg aaacaccgac gcatgtgcag gccgcacgaa cacgatgatt
      841 gccaacgctg caagcacggc gacgaatccg agcaacacga ggccggcact cgtcgataca
      901 tacgcgcgtt ccgtggccgt gcggaccatt ggcgcgacga aaccgccgag gccgccgagc
      961 gaattgatca gcgcgatggc gccggccgca gcggcgccag tcaggtagtg cgtgggaaag
     1021 gtccagaaca gcggttgtgc tgcgatcagg ccgctcgccg cgaaacacaa cgcgatcagc
     1081 gagatcacgg gttgacccgc gagtcccgat atcgcgatac ccgcaccggc cacgaccagc
     1141 atcagcacgg cgagccatcg atgctggcca tgacgatccg cataccgcgg cacgaaccac
     1201 gtaacaagca ccgcacataa ccacgggatg gccgtgacga aaccaacctt cgcacccacg
     1261 ttcgcgccaa gcaatgcggc cacttgttgc ggcagataaa agatcacgcc atacacggac
     1321 atctgaatca ggaaatacac ccctgacagg atcagcaccc gcggatcgat caatgcggca
     1381 agcacgccgc gaggcccatg cgccgacgct gcctgtgcat cctgggaaag tcgcgcgagc
     1441 agcagctcac gttgggtggc atttaaccag cgagccttgg atggatcgtt gtcgagatac
     1501 caggacgccc atacaccaac gatggaggca agaacgcctt ccaccaggaa gagccactgc
     1561 cagcctgcaa aaccgaacgc gccatgcagg tcgagcaacg cgccggacaa tgggctgccg
     1621 aagatgaacg cgagcggcgc gccgaaatag aacacgccta gcgccctcgc tcgcgccgat
     1681 tgaggaaacc agtgcgtgag gtaatacaca atgcccggga aaaagcctgc ctcagccaca
     1741 cccagcgcga agcgcaacac atagaacatg gtggccgtat gcgcgaacgc catcgctgcg
     1801 gaaacaagcc cccatgtcac catgatccgg cacatccaga gcttggctcc cacacgatgc
     1861 agcagcaagt tgctcggtac ttcgaagagc gcatagccga caaaaaacac gcccgctccg
     1921 aacgcaaagg ccgcattcga aagacccgta tcgtgctgca gtgctttctg cgcgaagccg
     1981 atatttgccc gatcgagaaa cgccagcatg tacatcagca acaggaacgg cagcagtcgc
     2041 cgcatcacgc ggccaacgac cgcttcctcc gcactagcgg tatcgctcat gcgtgtctcc
     2101 agatattttt atgtgacggg cgtggctgta gcgacacccg ggacatccgc tagcggcttc
     2161 agtaggtcgc gcggccaccg gacagatcga acaccgacgc cgtgctgaac gcgcaatctt
     2221 ccgagctgag ccacagaatc agtgaagccg cttcttccgg caggaggaag cggttcatcg
     2281 ggatctt
//
LOCUS       DATGBK010001763         1856 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_20659, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001763 DATGBK010000000
VERSION     DATGBK010001763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20659"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..370
                     /locus_tag="VKJ77_24795"
     CDS             <1..370
                     /locus_tag="VKJ77_24795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004633623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HMC48559.1"
                     /translation="METGYQRGKIQEESMLYEHQKHDGTLPIIGVNTFRNPKANDTPQ
                     KIELARSTDDEKQSQLTRLDDFHKLHADEAPQMLAALQQAAIDNANVFEKLMDAVRVC
                     SLGQITTALFEVGGQYRRNM"
     gene            484..723
                     /locus_tag="VKJ77_24800"
     CDS             484..723
                     /locus_tag="VKJ77_24800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48560.1"
                     /translation="MADIHFSIPDDLAEEANEFRLLESHVLADLIREAIRRQHIDRLF
                     AAMGQMAALGDEPMSADDIQAEIRAARKAQRAPRY"
     gene            707..1099
                     /locus_tag="VKJ77_24805"
     CDS             707..1099
                     /locus_tag="VKJ77_24805"
                     /inference="COORDINATES: protein motif:HMM:TIGR00305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HMC48561.1"
                     /translation="MRLAIDSNIVMSGMLWGGKPALLLDLARQGRVEIYTCPELLAEL
                     ANAISRPKFHKKLAAAHMTAQKLITDYAQLATVIIISTLPMPVSRDPDDDIVLAMCHR
                     GEGKRNCQRRQRPAGAQAVSNHSHTPRS"
     gene            complement(1138..>1856)
                     /locus_tag="VKJ77_24810"
     CDS             complement(1138..>1856)
                     /locus_tag="VKJ77_24810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017878013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC48562.1"
                     /translation="PVSPGNEQASYVQVVRDRRVDGLVVGRTLVHDERIAFLSKVRFP
                     FVAHGRTRTEVPYAWFDYDNAAGIRIAVECLLAHGHRRIAMISAPLELNFACQRSESF
                     LAAMSGAGLAIDPRYLIADTLDRRSGHHAMLQLLACSPRPTAVIVDNHLSGVGAVRAL
                     LDAGVDIGKDMSVIVWGSMNDTLAGSNVTTIDQPDPHKAGACMVEMLLALTNGAAPES
                     LQELWQPVLQPGATVGRCAE"
BASE COUNT          399 a          562 c          563 g          332 t
ORIGIN      
        1 gatggagacc ggctaccagc gcggcaagat ccaggaagag tcgatgctgt acgagcacca
       61 gaagcacgac ggcacgctgc ccatcatcgg cgtcaacacc ttccgcaatc cgaaggccaa
      121 cgacacgccg cagaagatcg agctggcgcg ttccaccgac gacgaaaagc aatcgcagct
      181 cacgcgcctg gacgacttcc acaagctgca tgcggacgaa gcgccgcaaa tgctggcggc
      241 cttgcagcaa gcggccatcg acaacgccaa cgtcttcgag aagctgatgg acgcggtgcg
      301 cgtctgctcg ctgggccaga tcacgacggc gctgtttgaa gtcggcggcc agtatcgccg
      361 caatatgtaa gccgcgcgcg aacggctgat aaacgaaaag gcgggaggca tatcaatgtc
      421 tcccgccttt tctttttatg caccgcgact acactgattg aatcactcga tcaggagctg
      481 gtcatggccg acattcattt ttccataccc gacgatttag cagaagaagc gaacgagttt
      541 cggctgctcg aatcacacgt tcttgccgac ctaattcgcg aggcaattcg gcgccagcac
      601 atagaccgtc tatttgcggc gatggggcag atggcggctt taggcgatga gcccatgtcc
      661 gccgacgata ttcaagcaga gatacgcgcc gcacggaaag cgcaacgtgc gcctcgctat
      721 tgattccaac atagtgatgt cgggcatgct ttggggagga aagcccgcct tgcttttgga
      781 tttagcgagg caaggacgtg ttgagatata cacttgcccc gaattattag cggaactagc
      841 caacgcgatc agccgtccaa aatttcacaa aaaattggct gcggctcaca tgactgcgca
      901 gaagcttata accgactatg ctcaacttgc gacggtcatc ataatttcaa cgctacccat
      961 gccagtttcg agagaccccg atgatgatat cgtgttggcg atgtgccatc gcggcgaagg
     1021 caaacgcaat tgtcagcgga gacaacgacc tgctggcgct caagcagtat caaaccattc
     1081 ccatactccg cgtagctgag gtattgcagc ttctgaacgg acctcacgga ccttgatcta
     1141 ttccgcgcag cggccgaccg tggcgccggg ttgcaggacc ggctgccaca actcctgcag
     1201 cgactcgggc gcggcgccgt tggtcagcgc cagcagcatc tcgaccatgc acgcgccggc
     1261 tttgtgcggg tcgggctggt cgatggtggt gacgttggag ccggccagcg tgtcattcat
     1321 cgaaccccaa acgatcaccg acatgtcctt gccgatgtcg acgccggcgt ccagcagcgc
     1381 gcgcaccgcg ccgacgccgg acaaatgatt gtcgacgatg acggcggtcg gccgcggcga
     1441 gcaggccagc aattgcagca tcgcgtggtg gccgctgcgg cggtccagcg tgtcggcgat
     1501 caggtagcgc gggtcgatcg ccaggccggc gccggacatc gcggccagaa aactttcgct
     1561 gcgctggcag gcgaaattca gttccagcgg tgcgctgatc atggcgatgc gccggtgtcc
     1621 atgcgccagc aggcattcga cggcgatgcg gatgccggcc gcgttgtcgt agtcgaacca
     1681 cgcatacggc acctcggtgc gtgtgcggcc atgcgcgaca aacggaaagc gcaccttgct
     1741 cagaaaggcg atgcgctcgt cgtgcaccag cgtgcggccc accaccaggc cgtcgacgcg
     1801 gcggtcgcgc accacctgga cgtaagaggc ttgctcgttg cccggcgaga cgggcg
//
LOCUS       DATGBK010001764         1522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_182795, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001764 DATGBK010000000
VERSION     DATGBK010001764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182795"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..1137)
                     /locus_tag="VKJ77_24815"
     CDS             complement(175..1137)
                     /locus_tag="VKJ77_24815"
                     /inference="COORDINATES: protein motif:HMM:NF016293.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 family protein"
                     /protein_id="HMC48563.1"
                     /translation="MPLLIGWFGAGSRWLADLTDACAAIQRAGSALYPGASRFHRWRR
                     TRFWLRSLICWRTTTVWLERCSSAPLLDLVKRHPATLERMHRPFLHGRFTPGERLAAS
                     LDHHMLTQQRAPHLANRIAAEGRVPVAHFSVGLERWQVSLESIEHFQREGDWTLCIRD
                     ALDQRVVSCTFSLAYLGGKVRRPRMCIGCVQGPDKSVNGRELFRALTKRWHGLRPKIF
                     VIYLAQCVAQALDVDGTFIVSKHAHVYANWRYCLRKRRVSANYDSLSRECGAFNDWNG
                     WFVLAPPALYLANHQGTDSGRAARRKRYALRADVASQIKASLTH"
     gene            1423..>1522
                     /locus_tag="VKJ77_24820"
     CDS             1423..>1522
                     /locus_tag="VKJ77_24820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004184573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HMC48564.1"
                     /translation="MPFRILLVEDDERLSALVAGYLRKHDYQVDVVL"
BASE COUNT          309 a          486 c          451 g          276 t
ORIGIN      
        1 gatggcgaac gacggtgcgc accctgaacc gagcatcttg agcgcggccg cgaatcgtgg
       61 atccttcaga tatgcgacat taagccggca gtacggcgat acaccttcct gagcgttcgg
      121 gcacttaagg gggcaatgct ggattcttcg acccgcgcca acgaaaacca agcctcagtg
      181 cgtgaggctc gccttgatct gcgaggcaac gtccgccctt agcgcatagc gtttccgccg
      241 tgccgcgcga cccgagtccg tcccttgatg attggccaga taaagcgccg gcggcgcaag
      301 tacgaaccac ccattccagt cattgaacgc accacattca cgcgacaaac tatcgtagtt
      361 ggcggaaacc cggcgcttgc gcagacagta gcgccagttc gcatacacat gcgcgtgctt
      421 cgacacaatg aacgtgccgt ctacatcgag cgcttgcgcc acgcattgcg ccaggtagat
      481 cacaaagatc ttgggccgca gtccatgcca gcgtttcgtc agcgcacgaa acagctcgcg
      541 gccgttcacc gatttatccg gaccctgcac gcagcctatg cacatgcgcg gccggcgtac
      601 cttgccgcca agataagcaa ggctgaacgt gcacgacacc acacgctggt cgagcgcatc
      661 gcgaatgcat aaggtccagt cgccctccct ctggaagtgt tcaatcgatt cgagcgacac
      721 ctgccagcgt tcgagtccca ctgagaagtg cgcgaccggc acccgtcctt cagcggcgat
      781 ccggttggcc agatgcggcg cgcgctgttg cgtgagcatg tggtgatcca ggctcgcggc
      841 gagccgttcg cccggagtga agcggccgtg cagaaacggc cggtgcatgc gttcgagggt
      901 ggcagggtgg cgcttcacca gatcaagcag cggcgcgctt gaacagcgct cgagccacac
      961 cgtcgtcgtc cgccagcaga tcagcgagcg cagccagaag cgcgtacgcc gccagcggtg
     1021 gaagcggctc gcacccggat aaagcgcgct cccggcgcgc tggatcgcgg cacacgcatc
     1081 cgtgagatcg gccagccacc gcgaacccgc accaaaccat ccgatcaaaa gtggcattcg
     1141 ggcagatcct ttcaggttgt gaaccgaaag gatgctagcg acgcggtcta agccttcatg
     1201 tcgaattact tggagaattg tcgagttttg tcgggcgaca cgggcctgat ccggtccatc
     1261 cgctatcctt cgcatcgcgc ggagaggccc agccagtggc gataacgcgg ctgcttcgca
     1321 gtattattcg gtcagcgtcc gcgggcgctg accgtattgt gtacgctgcc gccgttatgg
     1381 taggcctgca tcccaacccg tcagtctgga aagaaaccac tcatgccctt ccggattctt
     1441 ctcgtggaag acgacgagcg cctgtccgcg ctggtcgccg gctatctgcg caaacatgat
     1501 taccaggtag acgtcgtgct tc
//
LOCUS       DATGBK010001765         1561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_44631, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001765 DATGBK010000000
VERSION     DATGBK010001765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44631"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VKJ77_24825"
     CDS             <1..397
                     /locus_tag="VKJ77_24825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48565.1"
                     /translation="QKLERALRREGDLKRELTQLQLRTSASGPDLDVQMDLMKFDVAQ
                     EKAAVASLTAALLSAQEDLELEKANRSAAVHLLKKHGVIDGVAYASFTREQRVELIAV
                     AMDEVAGKETTSRWRARSPAAKSGKSKGT"
     gene            722..>1561
                     /locus_tag="VKJ77_24830"
     CDS             722..>1561
                     /locus_tag="VKJ77_24830"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC48566.1"
                     /translation="MSVEFIGMIQQQKVSETHLAHGPAIDIDYLRDFAQAHEKAGFDR
                     ILVPYQSTSPDAMLTVAYAAGVTQRIHFMLAHRPGFVAPTLAARQLATLDQLSGGRLA
                     VHFISGGSDVEQRRDGDFLSHDERYARTDEYLQILRRVWTESEPFDHEGRYYRFEKAF
                     SEVKPKQAPYVPIYFGGASAPALEVAGKHADVYALWGESKEQVREQVTRVRAEAAKHG
                     RNVRFSVSFRPILAATEKAAWERAEHILDETRRLRAEQGLGEATPQQSEGARRLLAAA
                     GDGV"
BASE COUNT          330 a          489 c          469 g          273 t
ORIGIN      
        1 gcaaaagctc gaacgcgcac ttcgccggga aggcgatttg aaacgcgaac tgacgcagtt
       61 gcagcttagg acgtcggcga gcgggcctga tctcgacgtc cagatggacc tgatgaaatt
      121 cgacgtcgcg caggaaaaag ccgcggtcgc gagtttgaca gcggcattgc tcagcgcgca
      181 ggaagacctg gaactcgaga aggcgaaccg ctcggctgcg gttcatctct tgaagaagca
      241 tggcgtgatc gatggtgtgg cgtacgcaag ttttacgcgc gagcaacggg tcgaactgat
      301 cgcagtggca atggatgagg tcgcggggaa agagacgact agtcggtggc gggcgcggtc
      361 gccggctgcg aaatcgggga agagcaaggg gacgtaaggg atgcgcgacg gtgggcttca
      421 agatcgcaac gattgagtga gggcgccctg cgcctacgct caatcccatg ctaattttct
      481 cagcgtaacg cacggctcga ccgagtgtgc tgcgcgatgt cgcggtccgc tcccgtttcc
      541 gcacatcacg gtaagaacct cccaatctcc ccctccccac tcacccccac gccatatctt
      601 tagctcgttt tgatatttag gatctgcgtc agccgatgtt agcctttaga gctatcggca
      661 gcgtcctgaa gcgtctcttc acgcactgcc tcacagtgtg aatcaacgag gagcgtcttt
      721 cgtgagcgtc gaattcatcg gcatgatcca gcagcaaaaa gtgtcggaaa cacatctggc
      781 gcatggtccg gcaatcgata tcgactatct ccgcgacttc gcccaggcgc acgaaaaagc
      841 cggcttcgac cgcattctcg tgccctatca gtcgaccagc cccgacgcta tgctgaccgt
      901 cgcttacgcg gccggcgtca cgcagcgcat ccacttcatg ctcgcgcatc gccccggatt
      961 cgtcgcgcca accctggccg cacgccagct cgcgacactc gaccagctaa gcggcggccg
     1021 cctcgcggtc cacttcatct cgggcggcag cgacgtcgag caacgccgcg acggcgactt
     1081 cctctcgcac gacgaacgct acgcccgcac cgacgaatat ctgcagatcc tgcgacgcgt
     1141 gtggaccgaa tccgaaccct tcgatcacga aggccgctat taccgcttcg aaaaagcgtt
     1201 ctccgaagta aagcccaagc aagcccccta cgtaccgatc tatttcggcg gcgcgtcagc
     1261 accggcactc gaagtcgcgg gcaagcacgc ggacgtctac gcgctctggg gcgaatcgaa
     1321 ggaacaggtg cgcgaacagg tcacccgcgt tcgcgccgaa gcagcaaaac atgggcgcaa
     1381 cgtgcgcttc tccgtgtcgt tccggccaat ccttgcagca acggaaaagg ccgcgtggga
     1441 acgcgctgaa catattcttg atgaaacgcg gcggctgcgt gccgagcagg gtctcggtga
     1501 agcaacgccg cagcagagtg aaggcgcgcg ccgcctgctg gctgcagcgg gcgacggcgt
     1561 a
//
LOCUS       DATGBK010001766         2263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_252301, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001766 DATGBK010000000
VERSION     DATGBK010001766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252301"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..389)
                     /locus_tag="VKJ77_24835"
     CDS             complement(<1..389)
                     /locus_tag="VKJ77_24835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008350310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HMC48567.1"
                     /translation="MPDTAVSPALIPEPSFDDALAFVREHAGDARLTSGELLVEHAAG
                     TARIMQTLNVDPAAIVAAALFAIAPHIDDPERVISERFGAEVQGLVADVRKLWRLGSV
                     SSRASQATLPETGREAQAARRAQVEALR"
     gene            complement(423..776)
                     /locus_tag="VKJ77_24840"
     CDS             complement(423..776)
                     /locus_tag="VKJ77_24840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006486103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC48568.1"
                     /translation="MAVIRHHVGARLSEIAIHNGTIYLAGQIAEDTDQDITGQTREVL
                     GHIDRLLTEAGSDKTQLLSVQIYLSDMANFAAMNAAWDMWVPEGNAPPRATVESKLAN
                     PACLVEVVVVAAALS"
     gene            complement(825..1742)
                     /locus_tag="VKJ77_24845"
     CDS             complement(825..1742)
                     /locus_tag="VKJ77_24845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008918805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC48569.1"
                     /translation="MSASIVEAAPSFVPTPRQRHVQCISPSGLHRMAYTEWGDPANPR
                     VLVCVHGLTRSGRDFDEVAKAFAREYRVVCPDVVGRGLSDWLVDPKHYGVPQYVGDMV
                     ALIARLNVETVDWFGTSMGGLIGLGLAGIPNSPIRKLLLNDVGPHIEPVALERIGAYL
                     GRGGTFATLQEGIDNAAQLAASFGPLTADEWRAINTPLMQEREGRWGYRYDPKVAVPF
                     AAADANAASLGEAILWHSLAAIQHPVLVVRGEHSDLLSRETVAKMVASGQAVTAKEIA
                     GVGHAPAFLAPDQIAIAYRFFLDTETSKA"
     gene            complement(2016..>2263)
                     /locus_tag="VKJ77_24850"
     CDS             complement(2016..>2263)
                     /locus_tag="VKJ77_24850"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HMC48570.1"
                     /translation="VAGVKRVIVLMEHVAKGDQHKILDACTLPLTGVAVVDRIITDLG
                     VIDVTDAGLKLVELAPGVSVEEIQQKTGAPLDVSSVK"
BASE COUNT          471 a          756 c          624 g          412 t
ORIGIN      
        1 cgcaacgctt cgacctgggc acggcgcgcg gcttgcgctt cacggcccgt ttccggcaac
       61 gttgcctgcg aggctcgtga gctgaccgac cccagccgcc acagcttacg gacgtccgcg
      121 acaaggcctt gcacttccgc accaaaacgc tcactgatga cacgctcggg gtcgtcaata
      181 tgcggcgcaa ttgcaaacag cgccgccgcc acaatggctg caggatcgac gttcaacgtt
      241 tgcatgatcc gcgccgtacc ggccgcgtgt tcgaccagca attccccgct ggtcaatcgc
      301 gcatctcccg cgtgttcgcg cacgaacgcg agcgcgtcgt cgaaggacgg ctcgggtatc
      361 agcgcaggag aaacggcggt atcaggcata cggattgatc tagtactcga aatgttcccg
      421 gcttagctga gcgcggcagc gacgaccacc acctccacga ggcatgccgg attggcaagc
      481 ttcgattcca cggtagcgcg cggcggcgca ttgccttccg gaacccacat gtcccacgct
      541 gcgttcatgg cggcgaaatt ggccatgtct gacagataga tctggaccga caacagctgt
      601 gtcttgtcgc tgccggcttc cgtcagcaaa cggtcgatat ggccgagcac ttcgcgggtc
      661 tggcccgtga tgtcctggtc ggtgtcttcg gcaatctgac cggcaagata aatggtgccg
      721 ttgtggatcg cgatttccga aagacgcgcg ccaacatggt gacgaatgac tgccatgagt
      781 gttcctgaga gtgaatagtc aataaaaccg tacgaagctc aatattatgc cttggacgtt
      841 tcagtatcga ggaagaaccg gtacgcgatc gcgatctgat caggtgccaa aaacgccggc
      901 gcgtgaccca cgcccgcaat ctccttggcc gtcacggcct gcccgctcgc gaccattttt
      961 gcgacggtct cgcgcgacag caagtccgaa tgttcacccc gaacgaccag caccggatgc
     1021 tggattgccg ccagcgaatg ccacaggatc gcctcgccga gcgaggccgc atttgcgtcg
     1081 gccgcagcaa atgggaccgc gactttcggg tcgtaccgat acccccagcg accttcgcgc
     1141 tcctgcatca acggcgtatt gattgcgcgc cattcatcgg cggtcaacgg cccgaacgac
     1201 gcagcgagct gcgccgcgtt gtcgatgcct tcttgcagcg tggcgaatgt ccctccgcgg
     1261 ccaagatagg cgccgatgcg ctcgagcgcc accggttcaa tatgcggccc gacgtcgttg
     1321 agcagcaatt tccggatcgg cgaattcggt attccggcaa gcccaaggcc gatcagtcca
     1381 cccatggacg tcccaaacca atccaccgtt tccacgttca gccgtgcaat gagcgcgacc
     1441 atgtcaccta cgtactgcgg caccccgtaa tgcttgggat cgaccagcca gtccgacaac
     1501 cctctcccga ccacatccgg acacaccacc cgatactcgc gagcgaacgc cttcgccacc
     1561 tcgtcgaaat cccggccgga gcgcgtcagc ccatgcacgc acacgagcac gcgcgggttt
     1621 gccggatcgc cccactcggt ataagccatg cgatgcaggc ccgacgggct gatgcactgc
     1681 acgtggcgtt ggcgtggcgt gggaacaaac gaaggcgcag cttcgacgat agacgcggac
     1741 ataagatttt cctctgtgcg atggcgctgc ggcatacaag cgactcaact gcaatcgatt
     1801 gtaaacgctt taccggctgc gctttggcgc gacgccgtag cgttagccga acggtctgaa
     1861 caaagccacc atgcgcttcc tcaaaacacg aaccgcaagc ccctttgcag cccacccgac
     1921 cgtcgcaaac gccgccaata aaaaaaccgc tccgactcac gtcggaacgg ttcgtttcgg
     1981 ccggacaaac aaaccggcgc cgattcagaa aaaccttact tgacgctgct cacatccaac
     2041 ggtgcgccgg ttttctgctg gatctcttcc acactgacgc ccggcgccag ttcgacaagt
     2101 ttcagtcctg cgtcggtgac atcgatcacg ccaagatccg taatgatccg gtcgaccacg
     2161 gccacacccg tcagcggcaa cgtacacgcg tcgagaatct tgtgctggtc gcccttcgcg
     2221 acgtgctcca tcaacacgat cacgcgcttc acgcccgcaa cca
//
LOCUS       DATGBK010001767         3733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_90183, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001767 DATGBK010000000
VERSION     DATGBK010001767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3733
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90183"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..372)
                     /locus_tag="VKJ77_24855"
     CDS             complement(<1..372)
                     /locus_tag="VKJ77_24855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006757066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HMC48571.1"
                     /translation="MSDPQQIKDEPVEETFISHLVELRDRIIRAGASVIVVFIGLVYW
                     APNIFRLLARPLMENLPKDGKMIVTDVTGSFFVPMKVTMMVALVIALPVVLYQIWAFI
                     APGLYQHEKKLVVPLVGSSYFL"
     gene            complement(442..987)
                     /gene="tatB"
                     /locus_tag="VKJ77_24860"
     CDS             complement(442..987)
                     /gene="tatB"
                     /locus_tag="VKJ77_24860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HMC48572.1"
                     /translation="MLDLGLTKMALIGVVALVVLGPERLPGVARTAGALFGRAQRYIN
                     DVKAEVSREMELDELKKMRTEFETAASNVENKIHDNLRQHENELNDAWNQGTSVSDSV
                     AGGGDPNLTHVSGDTWRSNSDNTFSSNASPAKRKNWRVKQAAIPNWYKRTTLRKTRVQ
                     SGAARVARHTPETLRRPTRFF"
     gene            complement(1067..1297)
                     /gene="tatA"
                     /locus_tag="VKJ77_24865"
     CDS             complement(1067..1297)
                     /gene="tatA"
                     /locus_tag="VKJ77_24865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012434498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HMC48573.1"
                     /translation="MGSFSIWHWLIVLLIVALVFGTKKLRNIGGDLGGAVKGFKEGMK
                     EGDATPAEQRELPRDGTVDVEAKDKTRSTDYR"
     gene            complement(1502..1864)
                     /locus_tag="VKJ77_24870"
     CDS             complement(1502..1864)
                     /locus_tag="VKJ77_24870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020070653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HMC48574.1"
                     /translation="MSQENCIFCKIAAGEIPSKKVHEDDEFVAFHDINPAAPVHVLVI
                     PRKHIETLSSCTEADAPLLGRMLSLTARLAGELGVAYTGGDTGFRTVINTGPGGGQEV
                     YHIHAHILAGERPWRRMG"
     gene            complement(1919..2311)
                     /locus_tag="VKJ77_24875"
     CDS             complement(1919..2311)
                     /locus_tag="VKJ77_24875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48575.1"
                     /translation="MNQSYEPYPPPVYQNSPESERLRSLRTLTHVLYALYAAYWLTGG
                     LTVLIAVIINYLKRDDVAGTPYEAHFRWQIRTFWWALLGHVIGVALIWVFIGFPILFV
                     VGIWTLYRVIKGWLFLYENKPLQPGAWV"
     gene            complement(2357..2737)
                     /locus_tag="VKJ77_24880"
     CDS             complement(2357..2737)
                     /locus_tag="VKJ77_24880"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HMC48576.1"
                     /translation="MTQDTLSTQDTLLRLAAIIDSRKGGDPEQSYVSRLFHKGDDAVL
                     KKIGEEATEVVLAAKDTRHGGAPKALVGEVADLWFHCLVMLSHFDLGPADVIAELERR
                     EGMSGIEEKALRKSRDREQNENGG"
     gene            complement(2737..3150)
                     /gene="hisI"
                     /locus_tag="VKJ77_24885"
     CDS             complement(2737..3150)
                     /gene="hisI"
                     /locus_tag="VKJ77_24885"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HMC48577.1"
                     /translation="MTAQTEEAGWLEKVKWDANGLVPVIAQESATGDVLMFAWMNREA
                     LAKTIELKRAVYYSRSRQRLWFKGEESGHVQHVHEVRLDCDEDVVLLKVEQVSGIACH
                     TGRHSCFFQKFEGSVETGDWVAVEPVLMDPEHIYK"
     gene            complement(3154..>3733)
                     /locus_tag="VKJ77_24890"
     CDS             complement(3154..>3733)
                     /locus_tag="VKJ77_24890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HMC48578.1"
                     /translation="LILDIIEAVASQVFIPLTVGGGVRAVADVRRLLNAGADKVSMNS
                     SAVSNPQLVYEASQKHGSQCIVVAIDAKQVAPGKWEVYTHGGRKATGLDAIEWARKME
                     QLGAGEILLTSMDRDGTKSGFDLALTRAVSDAISIPVIASGGVGSLAHLADGITEGHA
                     DAVLAASIFHYGEHTVGEAKRFMADQGISVRI"
BASE COUNT          740 a         1154 c         1039 g          800 t
ORIGIN      
        1 caggaaatag ctgctcccga ccagcggcac gaccagcttc ttctcgtgct gatatagccc
       61 cggcgcgata aaggcccaga tctgataaag cacgacaggc agcgctatga ccagcgcgac
      121 catcatggtc actttcatcg gaacgaaaaa cgaaccggtg acgtcggtga caatcatctt
      181 gccgtccttt ggcaagtttt ccatgagcgg acgcgcgagc aaccgaaaga tattcggcgc
      241 ccaataaacc agtccgatga acacgacgat gactgaagcg cctgcgcgaa taatgcggtc
      301 acgcagttcg accaggtgcg agataaacgt ctcttcgacg ggctcgtctt taatctgttg
      361 cgggtcgctc acgccggccc tctgctggga ttcatcgatg gaagggaagt tgctgttcgc
      421 gcaatgaaag cggcgtaaac atcagaaaaa ccgcgtagga cggcgcagcg tctcaggcgt
      481 atgccgcgcg actcgcgccg cgcctgactg aacgcgcgtc ttgcgcaacg tggtgcgctt
      541 gtaccagttc ggaatggccg cctgcttgac gcgccagttc ttgcgtttcg cgggcgacgc
      601 gttgctgcta aacgtgttgt ccgagttcga acgccaggtg tcgccggaaa cgtgggtcag
      661 attcgggtcg ccaccgcccg ccacgctgtc cgagaccgac gtgccctggt tccaggcgtc
      721 gttgagttcg ttttcgtgct ggcgaagatt gtcgtgaatc ttgttctcga cattcgatgc
      781 cgccgtttcg aactcggtac gcattttctt caactcatcg agctccatct cgcgcgagac
      841 ttcggccttg acgtcgttga tataccgctg cgcgcggccg aacagcgccc ctgccgttcg
      901 tgccactccg ggcaagcgtt ccggcccgag cactaccagc gcgacgacgc cgatcagcgc
      961 cattttggtc agaccaaggt cgagcatgga atcgaagatc ctgagggtgg cgaatggagg
     1021 tggccggggt cggacttacc gtgcttagtc agtttaatca gcttgattat cggtaatcgg
     1081 tcgaacgggt cttgtccttc gcttccacgt cgaccgtgcc gtcgcgcggc aattcgcgct
     1141 gctcggccgg cgtcgcatcg ccttctttca tgccttcctt gaaacccttg accgcgccgc
     1201 ctagatcacc gccgatgttg cgcagtttct tcgtgccgaa aaccaatgcc acgatcagca
     1261 aaacgatcaa ccaatgccaa atgctaaacg aacccatgac tgaaaactct ccttggcttc
     1321 gccgcgcatg tctctcacga cgaagaatgt ggaccttgcg gcccgagtcg gagcatcgac
     1381 gccccgatga ttgaatcgat atcttgcgcg cccaatattg cgatgaaaag acgctttcgt
     1441 tttcattaca tattggccgc gcgatcacgc gtatttgttg aacaactcat caaacaaccg
     1501 ttcagcccat ccggcgccac gggcgttccc cggcgaggat atgggcgtga atgtgataca
     1561 cctcttgtcc tccgcctggt cccgtattga taaccgtccg gaacccagtg tcaccgccgg
     1621 tgtaggccac gcccaattcg cctgcaagcc gtgccgtcaa gctcaacatt ctaccaagca
     1681 gcggcgcatc ggcttcggtg cagctcgaca gcgtctcaat atgtttacgc ggaatcacga
     1741 gcacatgcac gggcgcggct gggttgatat cgtgaaaagc aacaaattca tcgtcctcat
     1801 ggactttctt gcttggaatt tctcccgcag cgatcttaca gaaaatgcag ttctcttggc
     1861 tcatgtgtgt cgcggggtat cccgatataa atgcatgttg acgatcaggc gttcggtctc
     1921 aaacccaggc acccggttgc aatggcttgt tctcgtacaa aaacagccag ccctttataa
     1981 cgcgataaag cgtccagatg ccgaccacga acaagattgg gaaaccgata aacacccaga
     2041 tcaacgctac gccgatcaca tgaccgagca acgcccacca gaaggtgcgg atttgccatc
     2101 ggaaatgcgc ttcgtagggc gttccggcga cgtcatcgcg tttcaggtaa ttgatgatga
     2161 ccgcgatcag cacggtcagt ccgccggtga gccagtacgc ggcgtaaagc gcgtacagca
     2221 cgtgggttag cgtgcgcaag ctgcgcaggc gttcggattc gggcgagttt tgataaaccg
     2281 gcggcggata aggctcgtaa gactgattca tttcttcctc ctcggcgacc ggtcgagcgc
     2341 gacccggccc tgtagcttag ccgccgtttt cgttctgctc gcgatcgcgg gatttgcgta
     2401 acgccttttc ttcgatcccc gacatccctt cccgtcgttc cagttcggca atcacgtctg
     2461 ccggaccgag gtcgaaatgg gacaacatca cgaggcaatg gaaccacaag tcggccactt
     2521 cgccgaccag cgccttgggt gcaccgccgt gtcgcgtgtc cttcgcggcc agcacgactt
     2581 cggtagcttc ctcgccgatc ttcttgagaa cggcgtcgtc acccttatga aagagtcgcg
     2641 aaacgtagga ttgttccggg tccccgccct tgcggctatc gataatcgcc gcgaggcgca
     2701 gcaacgtgtc ttgcgtggaa agcgtgtctt gagtcattac ttatagatat gttcggggtc
     2761 catcaagacc ggttcaacag cgacccagtc gcccgtttcc accgatccct cgaatttctg
     2821 gaaaaagcac gaatggcggc cggtgtggca cgcaatgccc gacacctgct ccactttcag
     2881 caatacgacg tcttcgtcgc aatcaagccg gacttcgtgc acgtgttgga cgtgtccgga
     2941 ctcctcgccc ttgaaccaaa ggcgctggcg cgaacgtgag taatacactg cgcgcttcaa
     3001 ttcgatggtt ttcgccaagg cttcgcggtt catccacgcg aacatcagca cgtcgcccgt
     3061 tgcggattcc tgcgcgatca ccggcactag gccgttcgcg tcccacttga ccttctcgag
     3121 ccagcccgct tcttcagttt gtgcagtcac cgcttaaatc ctcaccgaga tgccctgatc
     3181 ggccatgaag cgttttgcct cgccgaccgt gtgttcgcca tagtggaaga tgctcgcggc
     3241 aagcaccgca tcggcgtgac cttcggtgat gccgtcggcc agatgcgcga gcgagcccac
     3301 tccaccggat gcaatcaccg ggatggaaat agcgtccgat acggcccgcg tcagcgcaag
     3361 gtcaaagccg cttttcgtgc cgtcgcgatc catgctggtc agcaggattt cgccggcgcc
     3421 cagctgctcc atcttgcgcg cccactcgat ggcgtccagg ccggtggcct tgcgaccgcc
     3481 gtgcgtgtac acttcccatt ttccgggcgc gacctgcttg gcgtcgatgg ccacgacgat
     3541 gcattgcgag ccgtgctttt gcgaggcctc gtagaccagc tgcggattgc tcacggccga
     3601 cgagttcatg ctgaccttgt cggcgccggc gttgagcagg cgccgcacgt ctgccacggc
     3661 gcgcacgccg ccgcccaccg tcagcgggat gaacacctgc gacgccacgg cctcgatgat
     3721 gtcgaggatc agg
//
LOCUS       DATGBK010001768         2355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_252357, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001768 DATGBK010000000
VERSION     DATGBK010001768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252357"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..422)
                     /locus_tag="VKJ77_24895"
     CDS             complement(<1..422)
                     /locus_tag="VKJ77_24895"
                     /EC_number="4.2.1.84"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0046914 - transition metal ion binding
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrile hydratase subunit alpha"
                     /protein_id="HMC48579.1"
                     /translation="MSDLQGNGPGHRHADDHDHQGSALSEMELRVRALESVLVEKEYV
                     DPKALDILIETYEHKVGPHNGARVVAKAWSDPAYRQWLLDDATAAIASLGYTGRQGEH
                     MVALENTPAVHNMVVCTLCSCYPWPVLGLPPVWYKSAP"
     gene            complement(637..1632)
                     /locus_tag="VKJ77_24900"
     CDS             complement(637..1632)
                     /locus_tag="VKJ77_24900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC48580.1"
                     /translation="MADVAREAGVSKMTVSRVLADRDVSAAMRERVLAVIEQLGYVPD
                     ASAGTLSSGRSPFIVALVPSMSSSNFADTVHSLNAAVTAHGLQLLLGDTDYDPKREEQ
                     LLRVMLAHRPEGVMLTGSFHTVATRAMLKRSKVPVVETWDVPRTPIQQAVGFSNVDAA
                     CEMMRHLHERGYRRIGFISGATRLDRRGLDRQTGYRQGLKLFGLGEPRVIQHGGSPVT
                     MSHGGEAFSLLLDTWPDTDAVMCVSDMSAFGALMECHRRGISVPRQMAVAGFGDFEVS
                     RYCYPSISTVAVDPHAIGRIAGEMLLAGAAARKSGLDVPSEKRRVEFKVVVREST"
     gene            complement(1737..>2355)
                     /locus_tag="VKJ77_24905"
     CDS             complement(1737..>2355)
                     /locus_tag="VKJ77_24905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018420505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48581.1"
                     /translation="ATLMRFAEQGGSTIYNTIVIAFLGGFVATKIGVPRGELAAIGTT
                     GALIASIVSIVTTPLFGALSDRIGRLTVYRGGAIFLLIWSVPSWWMISTGNPVWVTVS
                     MVGGLAFGANSMLGAQCAHFTELFGNRYRYSGVALARELGAVLSGGIAPLLGVYLIGL
                     SGGAFWVMGVYMAVLCILTLIGTFLSTETRERDLTLLNDAVGKGS"
BASE COUNT          520 a          802 c          628 g          405 t
ORIGIN      
        1 tacggcgccg acttgtacca gaccggcgga agtccgagca ccggccatgg gtagcatgag
       61 cacaacgtgc aaaccaccat gttgtgcaca gccggcgtat tctccagcgc aaccatgtgt
      121 tcgccctgcc tgccggtgta gccgagcgaa gcgatggcag cggtggcgtc atcgagcagc
      181 cattgcctgt acgccggatc gctccaggcc ttcgcgacca cacgcgcacc gttgtgcggt
      241 ccaaccttgt gctcgtatgt ctcgatcagg atatccagag cctttggatc gacgtattcc
      301 ttctccacca gcacggattc cagcgcgcgc acgcgcaatt ccatttcgga caacgcgctg
      361 ccttggtgat cgtggtcatc ggcgtgccga tgccctggtc cattcccttg aagatcgctc
      421 atcgaagttc gcccgagaaa ttatcaaaca ggaccagtat ggttggctct gtacgcgaat
      481 gcaaacccac cggatagaac ctggcgtggt gccccgtgct gctgcgctac gtcagcgcga
      541 acactagtct gccaccagcg atagagagcc gccaacgcat agccggtgta gttgaaagca
      601 cagcgtgcgt ggtccttcca actgggaaaa aagtcatcag gtactctccc tcacaaccac
      661 cttgaactcc actcgccgct tctccgaagg cacgtccaac ccgctcttgc gagcagccgc
      721 tcccgccaat aacatctcgc cggcaatccg cccgatggca tgcggatcga ccgccaccgt
      781 cgagatactc ggatagcaat atcgcgacac ttcaaaatcc ccgaacccgg caaccgccat
      841 ctgcctgggc accgaaatcc cgcgccgatg acactccatc agcgcgccga acgctgacat
      901 atcgctgaca cacatcacgg cgtcggtatc cggccatgta tcgagcaata gcgaaaacgc
      961 ctcgccgcca tggctcatgg tcacgggtga accgccatgc tgaatcactc gcggctcgcc
     1021 cagcccgaac aatttcaagc cttgacgata ccccgtttgc cgatccaacc cgcgacggtc
     1081 aagcctggtc gcgccgctga taaatccgat ccgccgatac ccacgctcat gaagatgccg
     1141 catcatttcg cacgcggcat cgacgttcga aaatcccacc gcctgctgga tcggcgtgcg
     1201 cggcacgtcc catgtttcga cgaccggaac cttcgaacgc ttgagcatcg cccgcgtggc
     1261 aacggtgtga aacgagccgg tcagcatcac accttccggc cgatgcgcga gcatcacgcg
     1321 cagaagctgc tcttcccgct tcgggtcgta gtcggtatcg ccgagtaaga gttgcaggcc
     1381 atgcgccgtg accgccgcgt tcaggctatg gacggtgtcc gcgaaattcg aactcgacat
     1441 ggacggcacc agcgccacga taaacggcga gcgcccggac gacagcgtgc ccgccgatgc
     1501 gtccggcaca taccccaatt gctcgatcac cgcgagcacg cgctcgcgca tggcagcgga
     1561 tacatcgcgg tcggccagca cgcgcgacac ggtcattttc gacacaccgg cctcgcgcgc
     1621 gacgtccgcc atcgtcggca tgaactctga cattaactcg cctgatctcg ttgaatgacg
     1681 ctagatcata cagcccgagc cggcgcggat tgcaccgcac gcgatgcctg gatagtttag
     1741 ctgcccttgc ccacggcgtc gttgagtaac gtcagatcgc gctcacgcgt ctcggtagaa
     1801 aggaacgtgc cgataagcgt caagatgcac agcactgcca tatacacgcc cattacccag
     1861 aacgcaccgc ccgacaaacc gatcagataa acaccgagca aaggtgcaat gccgcccgat
     1921 aaaaccgcgc ccagttcgcg cgccagcgca acgcctgagt aacgatagcg gttgccgaag
     1981 agttcagtga aatgcgcgca ctgcgcaccg agcatgctat tggcgccgaa cgccagaccg
     2041 cccaccatcg aaacggtaac ccagaccgga ttgcccgtac tgatcatcca ccatgaaggc
     2101 accgaccaga tcagcaggaa aatcgctccg ccacggtaaa ccgttaggcg tccgatccgg
     2161 tcagacagcg caccgaacag cggcgtggtg acaatactca cgatgctcgc aatcagcgcg
     2221 ccggtcgtac cgatcgcggc cagctcaccc cgcggtacgc cgatcttcgt tgcgacaaaa
     2281 ccaccgagga atgcaatcac gatcgtgttg tagatggtcg acccgccctg ctccgcaaag
     2341 cgcatcagcg ttgcg
//
LOCUS       DATGBK010001769         6349 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_276224, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001769 DATGBK010000000
VERSION     DATGBK010001769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6349
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276224"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            357..1466
                     /locus_tag="VKJ77_24910"
     CDS             357..1466
                     /locus_tag="VKJ77_24910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011546929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC48582.1"
                     /translation="MKLLKLAPLAVLGAFTASSYAQSSVTLYGLISGGVGFATNQAGH
                     NAYEALSGTNQNPRWGLKGREDLGGGLSAVFQLENGFNIMSGTASQNGREFGRLAYVG
                     LADKTYGTLTLGRQYDAIHDYIGSVIIASNGVNIGDNDNGYNDIRVQNSVKYVSPDYR
                     GLKATAIYGFSNSTGFGDNNAYSFGVGYENGPLKWSAVYAQYNHPDSPTNPDGAISND
                     YASPILIFDKSATHPSVFASKQRIAGTGGFYTIGKAQFAALFTDVHYDYLDNSHLHLQ
                     NFGVNVVYTMTPSLFLGAAYGYTDGKYDVINQKPQWHQVNLQADYFLSKRTDVALTVI
                     GQLAAGDAQHAQIFAFSQSTTTRQLVATIGMRHVF"
     gene            1469..2512
                     /locus_tag="VKJ77_24915"
     CDS             1469..2512
                     /locus_tag="VKJ77_24915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013211626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HMC48583.1"
                     /translation="MSQTFNFPRRTFLKASAALAAGALFNPLAQAANERRTVIIDCDP
                     GQDDAIAILFALGARDRLDVRALTAVAGNVPLELTERNARIVRDWAGQTKTLPVYAGC
                     PRPLMRPLITAANVHGKTGLEGVELHEPLAPVAQQHAVAYLIETLKAAAPHSVTICAI
                     GPLTNLATALTEAPEIREGLREIVLMGGAFFERGNITPAAEFNVYVDPEAASIVFASG
                     VPIVVLPRDVAVKAPITPARIAPIRAIGNSCGAIVADIMAAEVKYQKGRRGVEEAPMY
                     DPTAAGYLVDPTLFKGRLVNVVVETTGQWTLGETVVDWSGHSGRAPNATWITDVDADA
                     FYAALQASIATLP"
     gene            complement(2532..3440)
                     /locus_tag="VKJ77_24920"
     CDS             complement(2532..3440)
                     /locus_tag="VKJ77_24920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006480527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48584.1"
                     /translation="MSDRSSLLPALTLRQVQYFVALAHARSFTQAAQSLSLTQPALTA
                     AIRQIEFLLGGPLFARSAHRLTLTAAGASILPLAERLLNHARGTFDDMASTFAERLQT
                     VRIAMIPSVAGRLLPVLNAFREQRPSLRFTLTDLPNSALIDAVRDGVVDIGIGVHEPE
                     ANHEALRFKDVFEDEIVVVLRRDDPLAKRKTLPWAKLVGRDLAVFVRGSVSDALHRTS
                     GDEKLRLSVAYRMEYSEPLYALARNGLAIAVLPSLYTLHLHDPELVALRLDKPRVTRA
                     IALISLVGEDRGPHVKACWDYIAAHI"
     gene            3533..4882
                     /locus_tag="VKJ77_24925"
     CDS             3533..4882
                     /locus_tag="VKJ77_24925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012339414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HMC48585.1"
                     /translation="MASPDLAAAKTSSGWLDRRFALSARNTSVRIETLAGITSFLAAA
                     YLLVVIPSLLATGGMDRGAATTSTIIVFVLSTIFMGLYTNLPFIVGPGIGGSVILGVT
                     LAATEHVAWQTGLGIAFISGVLFLILTLVGARSLVVRLIPAQIKLGLGASIGLFIAVL
                     GFRNAGMVIANAKTNALALGDFSQPGTIVALIGLAAAVVLQGRRIPGAILWAILIAAA
                     AGIPLGVTHLPQSMISLPHDIMPVAFKLDIPSALTVAAIPYLFVFFAAEFFSTLGTTL
                     AVGAKANLLDENANLPNINRPFLVDSIAATLGPVFGIPALTALVESAAGVEAGGRSGL
                     SSLAAAGMFALMLLFVPVALAIPKEATAPALILIGLSMFSTIRHAHFDDFTDAFPVLS
                     MVLLTLMSNSFGTGIAGGLLCFVIVKLLAGRFKEVPWGLVVLAIPLGYYFWTVVKHH"
     gene            4941..6035
                     /locus_tag="VKJ77_24930"
     CDS             4941..6035
                     /locus_tag="VKJ77_24930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006491124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HMC48586.1"
                     /translation="MNETFGNVPPSRTGIKITPAHRAFFKAIPKVELHCHLLGAVRHQ
                     TFIALAEKSHAPIERAEIDAFYTRGEKPVGVLRVLRALDEYLLTDADDLHRITYEYLE
                     DAAAHNVRHAEFFWNPTGTVRVSKIEYGDAQAGIVAAIRDASRDFGMSALLIPSIDRE
                     ADPDEAVTLVEWMKAHRADEVAGIGVDYRENDRPPELFWKAYRNARGEGFKTTAHAGE
                     FGMPWRNVETAVELLKVDRIDHGYTIVDNPALAAKYAASGLVFTVVPTNSYYLRTLPP
                     EKWAELHPIRQMPGLGLKIHPNTDDPTLHKVNPSEAWELMFSHFGFGISDLRGFMLNG
                     IDGAWVDDATRDAWRAQWPGEFDALAAQMP"
     gene            6096..>6349
                     /locus_tag="VKJ77_24935"
     CDS             6096..>6349
                     /locus_tag="VKJ77_24935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48587.1"
                     /translation="MWPQAQVFALPYHAPGIAQAKNSDPTLWATPPPKTALMYPAADH
                     LTQAPKARPARIVLATVIGNAFVAYDFTVYSFSAVIIGKL"
BASE COUNT         1261 a         1957 c         1909 g         1222 t
ORIGIN      
        1 atgaccacgg tgcgcacgcg ctcggaaggc ggcacgctgc ctgacgcgcc gccgagttaa
       61 taaatgcact gaagttcgaa gcaaccaaaa gctgatatcg cagacggcgt ctgcgatatc
      121 agcgccgcct cgccgcctga cagccaacct tcgcgccggc aaatacaacg cgcgcacgct
      181 catcttcaag tcccttcgct ccctcgcatg cctgcttgta taaatccatt tgatgggttt
      241 ataagaaaac acaattattt ttatggtttt cagctttgta cagtccggtg cagtcacaac
      301 gcgccatgca gcaaaaaacg agcgcgacaa caacatccac tcgccaccgg accaccatga
      361 aacttctcaa gcttgcccct ctcgcggtgt tgggcgcctt cacggcgtcg tcgtatgcac
      421 agagcagcgt caccctttac ggcctgattt cgggcggtgt cggcttcgcg accaatcagg
      481 ccggtcacaa cgcttacgag gcgctcagcg gcacgaacca gaatccgcgc tggggcctga
      541 aaggacgcga ggacctgggc ggtggcttaa gcgcagtgtt ccagcttgag aacggtttca
      601 acatcatgag cggcacggcc tcgcagaacg gccgcgaatt cggccggctg gcgtatgtcg
      661 gtctcgccga taaaacctac ggcacgctga ccctcggccg ccagtacgac gcaattcacg
      721 actacatcgg ctcggtgatc atcgcgagca acggcgtgaa tatcggcgat aacgacaacg
      781 gttataacga catccgcgtc cagaattcgg tcaagtatgt gagcccggat tatcgcgggc
      841 tgaaggcgac cgcgatctat ggcttcagca attcgaccgg cttcggcgat aacaacgcgt
      901 acagcttcgg ggtcggctac gagaacggcc cgctgaagtg gagcgcggtc tacgcgcagt
      961 acaaccaccc ggacagcccc accaacccgg acggcgcgat ctccaacgac tacgcttcac
     1021 ccatcttgat cttcgataag agcgcgaccc acccgtccgt cttcgcgagc aaacagcgca
     1081 ttgccggcac aggtggtttc tacaccatcg gtaaagcgca attcgccgca ctcttcaccg
     1141 atgtccacta cgattacctc gataactccc acctgcactt gcagaacttc ggcgtgaacg
     1201 tggtgtacac catgaccccg tcgctgttcc tcggcgcggc ctacggctac acggacggca
     1261 agtacgatgt gatcaaccag aagccgcagt ggcatcaagt gaacttgcag gcagactatt
     1321 ttctctcgaa gcgtaccgac gtcgcgttga cggtgatcgg ccagctagcc gccggcgacg
     1381 cgcagcacgc gcagatcttc gcgttctcgc agtcgaccac cacgcgccaa ctggtcgcaa
     1441 ctatcggcat gcgccacgta ttctgaagat gagccaaact tttaatttcc ctcgtcgtac
     1501 tttcctcaag gcatcggcgg cgctggctgc cggtgcgctg ttcaacccgc ttgcgcaggc
     1561 cgcgaacgag cgccgcacgg tgatcatcga ctgcgacccg ggtcaggacg atgccatcgc
     1621 catcctgttc gcactcggcg cgcgcgaccg gctggacgtg cgtgcgctga ctgccgtggc
     1681 aggcaacgtg ccgctggagt tgaccgagcg caacgcacgc atcgtgcgcg actgggcggg
     1741 tcagacgaag accttgccgg tgtacgcggg atgcccacgt ccgctgatgc gcccgctgat
     1801 caccgcggca aacgtacatg gcaagacggg gctcgaaggc gtggagttgc acgagccgct
     1861 ggcgccggtc gcgcagcaac acgcggtggc gtatctcatc gaaacattga aagcggccgc
     1921 gccccatagc gtgacgatct gcgcgatcgg accgctgacg aacctggcga ctgcgctcac
     1981 cgaagcgcct gaaatccgcg aaggcctgcg cgaaatcgtg ctgatgggcg gcgcattctt
     2041 cgagcgcggc aacatcacgc cggccgccga attcaacgtc tacgtcgatc cggaagcggc
     2101 gagtattgtg ttcgcaagcg gcgtgccgat cgtcgtgctg ccacgcgatg tcgctgtgaa
     2161 agcgcccatc acgcccgcac gcattgcacc catacgcgcc atcggtaaca gctgcggcgc
     2221 gattgtcgcg gacatcatgg cggcggaggt caagtatcag aagggtcggc gcggcgtgga
     2281 agaagcaccg atgtatgacc ccaccgcagc gggttatctc gtcgacccca ccttgttcaa
     2341 aggccgcctg gtcaacgtgg tagtggaaac aaccgggcaa tggacgctgg gcgaaacggt
     2401 cgtcgactgg agcggccata gtggccgtgc gccgaacgca acctggatca ccgacgtcga
     2461 tgccgatgcg ttttatgccg cgttacaggc aagcattgca acgctaccct aagccaacgt
     2521 gcatcgaagg ttcaaatgtg cgcggcaata tagtcccagc acgctttcac gtgcgggccg
     2581 cgatcttcgc ccaccagcga gatcaacgca atggcacgcg tgacgcgcgg tttgtccaga
     2641 cgcagcgcca cgagttcggg atcgtgcaga tgcagcgtat agaggctcgg cagcaccgca
     2701 atcgcaaggc cgttgcgcgc cagcgcgtac aacggctcgg agtattccat ccgatacgcc
     2761 accgagagac gcagcttttc atcgccactc gtgcgatgca gcgcgtcgct cacactgccg
     2821 cgcacgaaca ccgccaggtc tcgcccgaca agcttcgccc acggcagggt cttgcgtttg
     2881 gcgagcgggt catcgcgccg caggaccacg acgatctcgt cttcaaagac gtctttgaac
     2941 cgcaaggcct cgtggttcgc ttccggttca tgcacgccaa tgccgatgtc cacaacacca
     3001 tcgcgcacag catcgatcag agcggaattc ggcagatcgg taagcgtaaa acgcagcgac
     3061 ggcctttgtt cgcggaacgc attcaacacc ggcagcagac gtcccgcgac cgatggaatc
     3121 atcgcgatgc gcacggtctg caagcgctcg gcgaaggtgc tggccatgtc gtcgaacgtg
     3181 ccgcgcgcat gattgagcag gcgctcggcg agcggcagta tgcttgcccc agcagcggtc
     3241 agcgtgaggc ggtgagcgga gcgcgcgaac aacgggccgc cgagcaggaa ctcgatctgc
     3301 cggatcgcgg cggtcagggc gggctgtgtc aacgagagcg attgcgccgc ttgcgtgaag
     3361 ctacgtgcat gcgcgagcgc aacgaagtac tgcacttgcc gcaacgtcag cgcgggcaag
     3421 agggacgaac gatcggacat tgagcgccac cgcttgggga caatgcgccg cagtataaag
     3481 cgcgaccaag ccaggatatg caaaggaaat aatagtgaac aaggaatctt cgatggcttc
     3541 tcccgacctc gccgcagcaa aaacatcgag cggctggctg gatcgccgct ttgcattgag
     3601 cgctcgcaat accagcgtgc gtatcgagac gcttgcaggc attacgtcgt ttctcgcggc
     3661 ggcgtatctg ctcgtcgtga tcccgtcgct gctcgcaacg ggcggcatgg atcggggcgc
     3721 ggcgacgacg tcgaccatca tcgttttcgt tttgagcacc attttcatgg ggctttatac
     3781 gaatctgccg tttatcgtcg ggcccgggat tggcgggtcg gtgatccttg gcgtgacgct
     3841 ggcggcgacc gaacacgtcg cctggcaaac cggtctcggc attgcgttca tctccggcgt
     3901 gctgtttctt atcctcacgc tggtcggcgc acgcagtctg gtcgtgcggc tgattccagc
     3961 gcagatcaag ctgggtctgg gcgcatccat cgggctcttt atcgcggtgc tcggattccg
     4021 taacgcgggc atggtgatcg cgaacgcaaa gaccaatgcg ctcgcgctcg gcgatttttc
     4081 gcagcccggc acgatcgtcg cgttgatcgg cttggccgca gccgtggtgt tgcaggggcg
     4141 acgtattccg ggcgccattc tctgggcaat cctgatcgcg gcggcggcgg gcatcccgct
     4201 gggggtcacg catctgccgc aatcgatgat ctcgttgccg cacgacatca tgcccgtcgc
     4261 gttcaagctg gatattccga gcgcgctgac cgttgctgct attccttatt tgttcgtgtt
     4321 cttcgccgcc gagtttttct cgacactcgg cacgacgctc gcagtcggcg ccaaggcgaa
     4381 cctgctcgat gaaaacgcca acctgccgaa tatcaaccgg ccgttcctcg tcgattcgat
     4441 tgccgccacg ctcggccccg tgttcggtat tccagcgctc acggcactgg tcgaatcggc
     4501 ggcaggcgtg gaagcgggtg ggcgcagcgg gctctcttcg ctggctgcgg caggcatgtt
     4561 cgcgttgatg ctgctgttcg tgccggtcgc gcttgcgatc ccgaaggaag ccaccgcgcc
     4621 ggcgctgatc ctgatcggcc tgtcgatgtt cagcacgatc cgccacgcgc atttcgacga
     4681 tttcacggac gcgttcccag tcctttccat ggtcctgctc acgctgatgt cgaatagttt
     4741 cggcacaggg attgcgggcg gcttgttgtg cttcgtgatc gtgaagctgc ttgcagggcg
     4801 ttttaaagaa gtcccctggg gtcttgtcgt gctggctatt ccgctcggtt attacttctg
     4861 gaccgttgtt aagcaccatt gacttaagcc tcatcaactc aagcaccatt gattccgcac
     4921 taccgaaagt actgaaaaat atgaacgaga catttggcaa cgtgccccca tcacgcaccg
     4981 gcatcaagat cacacctgcg caccgggcat ttttcaaggc aatcccgaag gtcgaactgc
     5041 actgccattt gctgggcgcg gttcggcacc agacgtttat cgcgttggcc gaaaaaagcc
     5101 atgcaccgat cgagcgcgcg gagatcgatg cgttttatac gcgcggcgag aagccggttg
     5161 gcgtgttgcg tgtgctgcgc gcgctggacg aatacctgct caccgacgcc gatgacctgc
     5221 accgtatcac ctacgaatat ctggaagacg ccgccgcgca taacgtgcgc cacgcggaat
     5281 ttttctggaa tccgaccggc accgtgcggg tatcgaagat tgaatacggc gatgcgcagg
     5341 caggcattgt cgcggcgatt cgcgacgcat cgcgggactt tgggatgtcc gcgctgctga
     5401 ttccgagtat cgaccgcgag gccgatcccg acgaagcggt gaccctggtc gagtggatga
     5461 aagcccatcg cgccgatgaa gtcgccggca ttggcgtgga ttatcgcgag aacgaccggc
     5521 cgccggaatt gttctggaaa gcgtatcgca acgcacgggg cgagggcttc aagaccactg
     5581 cgcatgcggg cgagttcggc atgccttggc gcaatgtgga gaccgcggtc gagttgctga
     5641 aggtggatcg tatcgatcat ggttatacga tcgtcgacaa tcctgcgctc gccgccaaat
     5701 atgcagcgtc aggcctggtg ttcacggtcg tgccgaccaa ctcttattac ttgcgcacgt
     5761 tgccgccgga gaaatgggcg gagttgcatc ccatccggca gatgcccggg ctgggtctga
     5821 agatccaccc gaacacagac gacccgacgc tgcacaaggt gaatccgagt gaagcgtggg
     5881 aactgatgtt cagccatttc ggctttggca tcagcgattt gcggggtttc atgctgaacg
     5941 gcattgacgg agcatgggtc gatgacgcga cgcgtgacgc gtggagagcg cagtggccgg
     6001 gcgaatttga tgcgttggcc gcgcaaatgc cataggggtt ggacgggttt tgggtgctgg
     6061 cggtcggtgg gttgccagac ttcgggggcg ggccgatgtg gccccaagca caagtattcg
     6121 cgttgcctta tcatgccccc ggcatcgccc aagccaaaaa cagcgaccca accctatggg
     6181 caacgccgcc cccaaaaacc gcactcatgt accccgcagc agaccacctg acccaagccc
     6241 caaaagcaag acccgcccgc atcgtcctgg ctaccgtcat cggtaacgcg tttgttgcgt
     6301 acgacttcac ggtttacagc ttctccgccg tcatcatcgg caaactttt
//
LOCUS       DATGBK010001770         2095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_321662, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001770 DATGBK010000000
VERSION     DATGBK010001770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321662"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..694)
                     /locus_tag="VKJ77_24940"
     CDS             complement(<1..694)
                     /locus_tag="VKJ77_24940"
                     /inference="COORDINATES: protein motif:HMM:NF020110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase N-terminal
                     domain-containing protein"
                     /protein_id="HMC48588.1"
                     /translation="MTNSLRLRLLLWLLLPLTVYVLAAGYMAREGAQRTASLIQDNAL
                     LASARVMAGDVKWDDSFLHADISPSAIEILSSPYGDRVFFRIRVIDGPAIAGTSDLEQ
                     VEPPSSPGWYDTEIDGQPVRAVSIIRPMYDSGESKRILVSVGRTELERDALATELWRP
                     QLQHFAEIIAIAIVLVCVGLTFELRHLMALTNDVRDRAPNELVPLRSEHLQSELRPIV
                     DAINQCIARIERQ"
     gene            complement(684..1361)
                     /locus_tag="VKJ77_24945"
     CDS             complement(684..1361)
                     /locus_tag="VKJ77_24945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013092490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC48589.1"
                     /translation="MKLLLVEDNEQLAHWLAKILEDDGFVLDRVSDGDAADRFLRTTR
                     YDVVLLDLNLPNLSGKGVLRRLRERGDDTPVLILTASGSVDEKVICLSAGADDYVVKP
                     FDARELVARVKVLVRRQLPSRSNSTRCGDLSYDIDRRQFSVAGEVLSLTPREHAVLET
                     LILKAKKTVSKPMLADSLGSSTTHTSEDAIEIYVSRLRKKLEKSTATIITLRGLGYLL
                     QASSDDE"
     gene            complement(1504..>2095)
                     /locus_tag="VKJ77_24950"
     CDS             complement(1504..>2095)
                     /locus_tag="VKJ77_24950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48590.1"
                     /translation="NWGIVLAGMGMVIMTTVSFYMITAYTPTFGKEVLKLSSIDALVV
                     TVFVGLSNLVWLPLSGAISDRVGRRPVLLFFTILTILTSYPAVQWLVADPSFLRLLGV
                     ELWLSFLYGSYNGAMVVALTEVMPVEVRTTGFSLAYSLATTIGGFTPAISTYLIHATG
                     NKAAPGAWMAVAAVCGLIATLVLYRSTEARSQYKTA"
BASE COUNT          433 a          664 c          623 g          375 t
ORIGIN      
        1 tctgccgttc gatcctggca atgcactgat tgatcgcatc gacaatgggc cgcaactcgc
       61 tctgaagatg ctccgagcgc aacggcacga gttcgttcgg cgcgcggtcg cgcacgtcat
      121 tggtcagcgc catgaggtgc cgcaactcga acgtcaggcc gacgcacacc agcacgatgg
      181 caattgcaat gatctccgcg aaatgctgca gttgcggccg ccatagctca gtcgccaatg
      241 catcgcgctc cagttccgtc cggcctactg acaccaggat gcgcttgctt tcaccagagt
      301 cgtacatcgg ccggatgatg gagaccgcgc gcaccggctg accgtcgatc tcggtgtcgt
      361 accagccggg tgaactgggt ggctcgacct gctcaagatc cgacgtgcct gcaatcgccg
      421 gcccgtcaat cacgcggata cgaaaaaaca cccggtcgcc atagggcgaa ctcaggatct
      481 cgattgcgct cggcgaaatg tcggcatgca ggaaactgtc gtcccacttg acgtcgccgg
      541 ccatcacacg cgcggacgca agcaacgcat tgtcctggat cagactcgcg gtcctttgcg
      601 cgccttcacg ggccatgtag cccgcggcaa gcacatagac cgtcagcggt agcagcaacc
      661 acagcagaag ccgaaggcgc aggctattcg tcatcgctgc tggcttgcaa caggtaaccc
      721 aggccacgaa gtgtaatgat ggtggcggtg cttttctcga gcttcttgcg cagcctggag
      781 acgtatatct cgatggcgtc ttcgctcgtg tgggtggtcg aactgccgag cgaatcggcc
      841 agcataggct tggaaaccgt cttcttggcc ttgaggatca aggtctcgag cacggcgtgc
      901 tctcgtggtg tcaggctcag cacttcgccg gctaccgaga actgccgccg gtcgatatcg
      961 taggaaagat cgccgcagcg cgtgctgttc gagcgcgagg gcaactgtcg ccgaaccagt
     1021 accttgaccc gtgcgaccag ctcgcgcgca tcgaacggct tgacgacgta gtcgtccgcg
     1081 ccggcgctca ggcaaatcac cttttcatcc accgaaccgc tggcggtcag gatcaacacg
     1141 ggcgtgtcgt cgccccgttc tctcagccgc cgcaacacgc ccttgccgga caagttgggc
     1201 aagttgagat cgagcagcac gacgtcgtag cgcgtggtgc gcaggaaccg gtcggccgcg
     1261 tcgccgtcgc tgacgcgatc aagcacaaaa ccatcgtctt ccagaatctt agcgagccag
     1321 tgagccagtt gctcattgtc ctcgaccagc agtagcttca tcacgttcac cgcgttatgc
     1381 atgggcattg tccgccagcc tggcatgcgt atgcttcgaa cgagcctcac gccacgccgg
     1441 gccacggccc tcaggcgaag tgtatctcgc tcggggcgtg gccatgcagt tgggcggtgc
     1501 ccgtcaagcg gtcttgtact gactgcgcgc ttccgtggat cgatacaaaa ccagcgtcgc
     1561 gatcaacccg cagactgcgg caacggccat ccatgcgccc ggcgccgcct tgttgccggt
     1621 cgcgtgaatc aggtacgtgg agatagccgg cgtgaacccg ccgatagtcg tcgccaggct
     1681 atacgccagc gaaaaacctg tcgtccgtac ttcgaccggc atgacttcgg tcagcgccac
     1741 gaccatcgcg ccgttatagc tgccgtacag gaacgagagc cacaattcca cgccgagcaa
     1801 gcgcaggaac gacggatcgg cgaccagcca ctgcacagcc ggatacgacg tgagaatggt
     1861 gaggatcgtg aagaacagca gcaccggccg gcggccaacg cggtcggaaa tcgcaccgga
     1921 aagtggcagc cagacgagat tcgacaagcc gacaaacacc gtcactacca gcgcatcgat
     1981 ggaagaaagc ttgagcactt ccttgccgaa ggtcggtgtg taggccgtga tcatgtagaa
     2041 cgacaccgtg gtcatgatga ccatgcccat gccggcaagc acgatgcccc agttc
//
LOCUS       DATGBK010001771         2290 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_298824, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001771 DATGBK010000000
VERSION     DATGBK010001771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298824"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..770
                     /locus_tag="VKJ77_24955"
     CDS             <1..770
                     /locus_tag="VKJ77_24955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010113945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HMC48591.1"
                     /translation="RLKQALEHDHFCLYVQPIVAVGDGLPASTEGQRAELLVRMLDPA
                     VANGVIAPTLFIPAAERYGLMTAIDRWVIRNAFDMLSRTRHKRFKEYAINLSGASVGD
                     ERFLGFVREQFQRTGVSPGMICFEITETTAIANLASAARFMHELNALGCHFAIDDFGA
                     GMSSFGYLKHLPVEYLKIDGSFVTDMVLDPVSRDMVAAINEMGHSMKCRTIAEYVESE
                     GILRALHALGVDYAQGYYIGRPTLWTEPAVLTLAKEA"
     gene            878..1513
                     /locus_tag="VKJ77_24960"
     CDS             878..1513
                     /locus_tag="VKJ77_24960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HMC48592.1"
                     /translation="MSHPLFRALRDGELGLHAMRAFLINGWPVINQFPQYMGMNLQKI
                     GPEETPGSRMARRYLTRNIRIEQNHADYWVDWAAAHDVSREDLQAGEAPALAFALSHW
                     CWKSSNADPLHASIAATNFAVEGVTGEWSTLLCSRDTLAHSYPESIRKTTMRWLRMHA
                     HYDDAHPWEALDIVATLLGRTPRVADIRDVKRSIQRSYEYFEVSLNCCLEA"
     gene            complement(1534..>2290)
                     /locus_tag="VKJ77_24965"
     CDS             complement(1534..>2290)
                     /locus_tag="VKJ77_24965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016355105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HMC48593.1"
                     /translation="HALKNRGAAIGKAFAGSLALGAGQFCTNPGLVLAIDGPELDAFI
                     EATAAALSETPAATMLTPGIHKAYESAVNKTAEHGEVKTLARGCAAKGATQGQAALFS
                     TTAAAFRANPELHEEIFGAASLIVRCPDLATMLELVEQLEGQLTAALHINEADHDDAR
                     RFLPALERRTGRILVNGFGTGVEVGHAMVHGGPFPSTADGRSTSVGSLAIDRFLRPVS
                     YQDMPEGLLPDALKTANPLGLNRRLDGKLQLSK"
BASE COUNT          443 a          681 c          714 g          452 t
ORIGIN      
        1 gacggctcaa gcaggcgctc gaacacgatc acttctgcct ctacgtgcag cccatcgtgg
       61 ccgtgggcga cggcttgcct gcctcgacgg aagggcagcg cgctgagtta ctggttcgca
      121 tgcttgatcc agcagtggcc aacggcgtga tcgcgccaac cctgttcatt cctgccgccg
      181 agcggtatgg cctgatgacg gctatcgacc gatgggtgat acgcaatgcc ttcgatatgc
      241 tgtcacggac ccgtcataag cgcttcaagg aatatgcgat caacctgtcg ggcgcctcgg
      301 tgggcgacga acgtttcctc ggtttcgtgc gcgagcaatt ccagcgcacg ggcgtctccc
      361 ctggcatgat ctgcttcgaa attacagaaa ccaccgcgat tgcgaacctg gcatcggcgg
      421 cgcggttcat gcacgagttg aatgcgctcg gctgtcattt cgcgatcgat gacttcggcg
      481 ccggcatgtc gtcgttcggt tacctgaagc atctgccggt agagtatttg aagatcgacg
      541 gcagtttcgt gaccgacatg gtgctcgatc ctgtgagccg cgacatggtc gcggccatca
      601 acgagatggg ccattcgatg aaatgccgga ccatcgcgga atatgtggaa agcgaaggga
      661 tcctgcgggc gctgcatgcc cttggggtgg attatgcgca agggtattac ataggacggc
      721 caacgctttg gacagagccg gccgttttga cactagcaaa ggaggcgtga tggggggtgg
      781 ggtttttaca agagagggcg acctcaagaa cgcagcaagc tacccacttt ggttacagga
      841 agttttgttg gaaaccggcg cggcgaaaag ccgtgtgatg tctcatcctc tttttcgggc
      901 cctgcgcgac ggcgagcttg gcctgcatgc aatgcgcgcg ttcctgatca acggctggcc
      961 ggtgatcaat cagtttccgc agtacatggg catgaacctg cagaagatcg gacccgaaga
     1021 aacgccgggc tcgcgcatgg cgcggcggta tctcacgcgc aatatccgca tcgagcaaaa
     1081 tcacgccgat tattgggtcg actgggccgc ggcccacgat gtttcgcgcg aggatctgca
     1141 agccggcgaa gcgcccgcgc ttgcgtttgc actgagccac tggtgctgga aaagcagcaa
     1201 tgcggacccg ttgcatgcgt cgatagcggc gactaatttc gctgttgaag gcgtgaccgg
     1261 agaatggtcg acactgcttt gcagccgcga cacgctcgcg cacagctacc cagaatcgat
     1321 ccgcaagacg accatgcgct ggctgaggat gcacgcgcac tacgacgacg cgcatccgtg
     1381 ggaagcactc gatatagtcg ccacgttgct gggccgcacg ccgcgcgtgg ccgacatccg
     1441 cgacgtcaag cgcagcatcc agcgcagcta tgaatacttc gaggtcagcc tgaactgctg
     1501 cctcgaagcg taactgccca ctgctttaca tccttacttc gataactgca gtttgccgtc
     1561 cagccgccgg ttcagtccga gcggattggc ggttttcagc gcgtcaggca gcaggccttc
     1621 gggcatgtcc tggtagctca ccggccgcag gaagcggtcg atggcgaggc tgcctacaga
     1681 agttgatcgg ccgtcggcgg tggagggaaa ggggccgccg tggaccatgg catggccaac
     1741 ttccacgccc gtaccgaaac cattcacgag aatccggccg gtgcgacgtt ccagcgccgg
     1801 caggaaacgg cgggcatcgt catgatccgc ttcattgata tgcaaggccg ccgtcaattg
     1861 gccttccagt tgctccacca actcaagcat cgtggcgagg tccgggcatc gcacgatcag
     1921 tgaagccgcg ccgaaaattt cctcgtgcaa ttccggattc gcgcggaacg ctgccgcagt
     1981 ggtcgaaaac agcgctgctt gcccctgcgt cgcgcctttc gccgcacagc ctcgcgcgag
     2041 cgtcttgacc tcaccgtgct ccgctgtctt gttcacggcc gattcatagg ccttgtgaat
     2101 acccggcgtc agcattgtgg cggcgggcgt ttcgctcagg gcggcagccg ttgcttcgat
     2161 gaacgcatcg agctcaggac cgtcgatggc aagcaccagg ccgggattcg tgcagaactg
     2221 gccggcgccc agcgcaagtg atccggcgaa ggctttgccg atcgccgcgc cgcgattttt
     2281 aagcgcgtgc
//
LOCUS       DATGBK010001772         3375 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_44733, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001772 DATGBK010000000
VERSION     DATGBK010001772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3375
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44733"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VKJ77_24970"
     CDS             <1..395
                     /locus_tag="VKJ77_24970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate synthase-related protein"
                     /protein_id="HMC48594.1"
                     /translation="AVAIGQGMLMALGCNSDTYFQHGGLHSAAADYAALGTSAGFCHH
                     CHTGKCPVGVTTQDTLLEQRVQPEEGSRRVRNYLKTLNMELTTIARACGKQNVHHLEP
                     EDLVALTVEAAAMARVPLAGTSWIPGLT"
     gene            complement(423..1328)
                     /locus_tag="VKJ77_24975"
     CDS             complement(423..1328)
                     /locus_tag="VKJ77_24975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007742657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48595.1"
                     /translation="MQTTALRYFLEVARSGSLSKASERLFVAVSALSRQIAKLEDEMG
                     VPLFERRPRGMVLSEAGRLLAAHAHRSLMEQDRVTEEIRGLTTDRRATIRVSSSEGVA
                     RDFLPQVFVHFLKTWPAAHFQLDVDGPSEATQRVRDGTADIAVCFSVAPEKDVNVHYA
                     QRAPIFALVAQDHPLAQRKSVSLADLKPWPLAIFHEGVTVRQLFDIACSLEGLTFEPV
                     FVSNYGSALQTFVQQTKAVTLVGYLTVRSRLKPDNLAAVPISNPELHQRTLQVQTMAG
                     RTLPKAVNAFLELLITAIQDPSCLD"
     gene            1481..2893
                     /locus_tag="VKJ77_24980"
     CDS             1481..2893
                     /locus_tag="VKJ77_24980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HMC48596.1"
                     /translation="MTRESAIQAAADLYDSGIFLEDLRRRVAMRTESQEPESGPLLRA
                     YLSEEITPALAELGFTSRLIDNPAKGAGPFLIAHRHESDDLPTAMTYGHGDVVRGYDA
                     QWRDGMSPWQVTVAGDHWYGRGTADNKGQHSINLAALKAVLDARRGRLGFNLKLLVET
                     GEEVGSPGLHAVCEMLRDELSADVLIASDGPRLGAAHPTIFLGSRGVINFKLDVNLRE
                     GGHHSGNWGGLLRNPGVVLASAIASMVDANGRILVEGLRPPDVPQAVRRALEGITVGG
                     NPGEPEVDTSYGEPGLTPAERVFGWNNMEVLAFRTGNPEKPVNAIPPHAFAYMQIRFV
                     VGTDWKNLEQIVRRHLDERGFEMVSVEVERGSPATRVDPDNAWVKWAERSLKRTTGRA
                     PVLLPNLGGTLPNDAFAEILGMPTLWVPHSYPGCSQHAPDEHLLGPVVREGLRIMAGL
                     FWDLGQPGESERPAFERRSA"
     gene            2893..>3375
                     /locus_tag="VKJ77_24985"
     CDS             2893..>3375
                     /locus_tag="VKJ77_24985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48597.1"
                     /translation="MSTESVTTVLPGARQHASIYKLIAATSIGNALEFYDLVVYGYFA
                     STLSKLFFPTTDKTVSLLLTLGTFALSYLARPVGAFVLGSYSDRKGRKASLTLSIAMM
                     TLGTGMVALMPGYATIGMLAPIGIFASRLLQGFSAGGEFGSSTAFLTEHAPARSGFMA
                     S"
BASE COUNT          638 a         1021 c         1058 g          658 t
ORIGIN      
        1 atgccgtggc gatcgggcaa ggcatgttga tggcgctggg ttgcaacagc gatacgtatt
       61 tccagcacgg tggcctgcat tcggcggcgg cggactatgc ggcgctgggt acatcggctg
      121 gtttttgcca tcactgccac acaggcaaat gcccggtcgg cgtcacgacc caggacacgt
      181 tgcttgaaca gcgcgtgcag ccggaagaag gctcacgccg ggtgcgcaat tatcttaaga
      241 cgctgaacat ggaactgacg acaatcgccc gggcttgcgg caagcagaat gtccatcacc
      301 tggagcctga ggatctggtg gcactgacgg ttgaagcagc ggccatggcg cgggtgccgt
      361 tggccggtac gtcctggatt ccgggtttga cctgagtaga aacactccga aaacaggctg
      421 cgtcagtcga gacacgaagg atcttgaatc gccgttatca gcagttcaag aaacgcattc
      481 acggccttgg gcaacgtacg cccggccatg gtctgaacct gaagtgtccg ctgatgcaac
      541 tcaggattgc tgatgggcac agccgccaga ttgtccggct tgaggcggct gcgcaccgtc
      601 aggtaaccga ccagcgtgac cgctttcgtc tgctgcacga aggtctgcag ggcgctccca
      661 tagttgctta cgaacacggg ctcgaaggtc aggccttcca ggctgcaggc gatatcgaat
      721 aattgtctga cggttacgcc ctcgtgaaag atcgcaagcg gccatggttt caggtcggca
      781 agcgagacgg acttccgctg cgctagcgga tggtcttgcg cgaccagcgc gaagatcggc
      841 gcgcgctgtg cgtaatgcac gttgacgtcc ttttccggcg cgacgctgaa acacacggca
      901 atgtcggcgg tgccgtcgcg tacccgctgc gtggcttcgg acggcccatc cacatcgagt
      961 tgaaaatgcg ccgccggcca ggtcttcagg aagtgcacga acacctgtgg caggaaatcc
     1021 cgggcgaccc cttcggaact cgatacacgg atcgtggcgc gacgatccgt cgtcaggccg
     1081 cgaatctcct cggtcacccg atcctgctcc atcaggctgc ggtgcgcatg cgcggccagg
     1141 aggcgtcccg cctcacttag caccatgcct cgcggccgcc gctcgaacag cggcacgccc
     1201 atctcatcct ccagctttgc aatctgccgg ctcagtgcag acaccgcgac gaacagccgc
     1261 tcggacgctt tgcttaatga cccgcttcgg gcaacctcaa ggaaataacg cagcgcggtg
     1321 gtttgcatga tgcatgcctc gtgggagctt tgccttttcg gcaacggaaa gtgccaaata
     1381 ttgtcattgt ccataaatat cggcggtatc aagatcgcgt catcgatttc ccgaatcaga
     1441 agacccaacg cctttggcat gcttcatcgg agataaatac gtgacacgcg agtccgctat
     1501 tcaagctgca gccgatctgt acgattccgg catttttctc gaagacctgc gtcgccgcgt
     1561 ggcaatgcga acggagagcc aggagcctga aagcggtccg ttgctgcgcg cgtatctgag
     1621 cgaggagatc acgcctgcgc tagctgaact cggcttcact tcccggttga tcgacaatcc
     1681 cgcgaagggc gcggggccgt tcctgatcgc tcatcggcac gaaagcgatg acctgccgac
     1741 ggccatgacc tatgggcatg gcgacgttgt acggggctac gacgcgcagt ggcgcgatgg
     1801 catgtcgccg tggcaagtca ccgtcgccgg cgatcactgg tacggacgcg gcaccgccga
     1861 caacaaaggc cagcacagca tcaacctggc cgcgctcaag gccgtactcg atgcacgacg
     1921 tggaaggctc ggcttcaatc tgaagctgct ggtcgaaacc ggcgaggagg tgggctcgcc
     1981 cggcctgcac gcggtgtgtg agatgcttcg cgacgaattg agcgccgacg tattgattgc
     2041 atccgatggc ccgcgtctgg gcgccgctca cccaacgatc tttctcgggt cccgcggtgt
     2101 catcaatttc aagctcgatg taaacctgcg cgaaggcggc catcattcgg gcaactgggg
     2161 cggcttgttg cgtaatcccg gcgtggtgct ggccagcgcg attgcgtcga tggtcgatgc
     2221 caacgggcgc atcctcgttg aaggcctcag accgcctgac gtgccgcaag cggtgcggcg
     2281 cgcgctggag ggcattaccg tgggcggcaa tccgggcgag ccggaagtcg acacaagtta
     2341 tggcgaaccc ggcctcacgc ccgctgaacg tgtattcggc tggaacaaca tggaggtgct
     2401 ggcattccgg accggcaatc ccgagaagcc agtcaatgca atcccgccgc acgcattcgc
     2461 ctacatgcag atccgcttcg tggtcggaac ggactggaaa aatctcgagc agatcgtacg
     2521 tcgccatctg gatgaacggg gctttgagat ggtcagcgtc gaggtggagc ggggctcgcc
     2581 cgccacgcgc gtggaccccg ataacgcctg ggtgaaatgg gccgagcgct cgcttaaacg
     2641 cactacgggg cgggcgcctg tgctcttgcc gaacctcggc ggcacgctgc ccaacgacgc
     2701 tttcgcggag atcctcggca tgcccacgct atgggtgccg cattcgtatc ccggttgttc
     2761 gcagcacgca cccgacgagc atttgcttgg accggtcgtg cgagaggggc tgcgcatcat
     2821 ggccgggctg ttctgggatc tgggccaacc cggtgaatcc gagcgcccgg ccttcgagcg
     2881 gaggagcgcc tgatgagcac ggaatccgtc accaccgttt tacccggcgc acggcaacat
     2941 gccagcattt acaagctgat tgccgcgaca tcgataggta acgcgctcga gttctacgat
     3001 ctcgtggtct acggctactt tgcctcgacg ttatcgaaac tgttctttcc aaccaccgat
     3061 aaaaccgtgt cgttgctgct gacgctcggg acttttgctc tgtcgtatct tgcgcgtccg
     3121 gtgggcgcgt tcgtgctggg gtcgtacagc gaccgcaaag gccgcaaggc ttcgttgacg
     3181 ctttccatcg ccatgatgac gcttggaacc ggcatggtcg cgttgatgcc cggctacgcg
     3241 accattggca tgcttgcgcc catcggcatc ttcgcgtcgc ggctgttgca gggattttcg
     3301 gcgggcggtg agttcggcag ttcgacggcg ttcctcaccg agcatgcgcc tgcgcgcagc
     3361 ggtttcatgg cgagc
//
LOCUS       DATGBK010001773         1772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_345078, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001773 DATGBK010000000
VERSION     DATGBK010001773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345078"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..369
                     /locus_tag="VKJ77_24990"
     CDS             <1..369
                     /locus_tag="VKJ77_24990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004371 - glycerone kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HMC48598.1"
                     /translation="KAAGARAEMPLTEAPMLIVAMAEGIRSRGKADQGEKTMVDVWTP
                     AAAAAEQGMASGLSLPDIMVRVRDAATVGAESTKSMVATKGRSARLGARSLGHIDPGA
                     ASAAMVLNVIAEDWGQRGKA"
     gene            505..1161
                     /locus_tag="VKJ77_24995"
     CDS             505..1161
                     /locus_tag="VKJ77_24995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2291 domain-containing protein"
                     /protein_id="HMC48599.1"
                     /translation="MSTIAPTINRRSKRGVRAAIAVVLAVVLIVAMAFSTKVVKIGSA
                     SDAQVKAFDPAVYGEAQFPKTQSAIEGKAVSADTLAAAIAKDQDAAGKQYGVAGGGIG
                     PEISVKFDGVAGSEDAGIYTVKVPNVPDSVIIRVQTGPAINGTDLRDATGTISFEQFT
                     NQIDYQNAGYAINTAMKKAVLSKVDTAKLTGKTISVVGVFQLINPNGWLVTPVKLDVK
                     "
     gene            1248..>1772
                     /locus_tag="VKJ77_25000"
     CDS             1248..>1772
                     /locus_tag="VKJ77_25000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006029166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48600.1"
                     /translation="MHALKGVNFDIHRGKVTTLFGENGAGKSTLMKILAGVETPTSGH
                     IELDGQRVAFASSNEARDHGISIIHQELSLAPNLSVRDNIFMGRELRSATGVNFAEEA
                     RQARALMADLEEEIDPLTRVQDLRLGQQQVVEIARALSVQSRILIMDEPTSALSASEV
                     EVLFKVIRDLTSRGV"
BASE COUNT          383 a          509 c          577 g          303 t
ORIGIN      
        1 aaggctgccg gggcgcgcgc agaaatgccg ctgaccgaag cgccgatgct gatcgtcgcc
       61 atggccgaag gcatccggtc gcgtggcaag gcggaccagg gtgaaaaaac catggtcgac
      121 gtctggacgc ctgcggccgc ggcggcagag caaggcatgg cgagtgggct gtcgctgccc
      181 gacatcatgg tgcgggtgcg cgacgcagcg acagtagggg ccgagtccac caaatcgatg
      241 gtcgcgacca aggggcgatc ggcacgtctg ggcgcgcgca gtctcggaca tattgatccg
      301 ggtgcggcgt ccgctgcgat ggtgctgaac gtgattgctg aagactgggg gcaacgtggc
      361 aaagcatgaa atgacaggcg ataagcgcga tggggacagt aggcccttat gcgcagtgga
      421 tgtggtgaag ctgttgatgc aagcgggagg atgcagcacg cccgctttgc atttcagtag
      481 ttatgaagta caggaggtgt ccccatgagc acaattgccc caacaataaa tcgtcgctcc
      541 aagcgcggcg ttcgcgcagc aatcgccgtg gtgctggcgg tggttctgat cgttgcgatg
      601 gccttcagca ccaaggtcgt gaagatcgga tcggccagcg atgcgcaagt caaggctttc
      661 gatcccgctg tctacggcga agcgcaattt ccgaaaacac agtctgcgat tgagggcaag
      721 gcagtcagcg ccgacacgct ggccgcagcc attgccaagg atcaggacgc cgccggcaag
      781 caatacggcg tggcaggcgg cgggattggc cctgaaatat cggtcaagtt cgacggcgtt
      841 gcagggagtg aggatgccgg gatctatacc gtgaaagtgc caaacgtgcc tgactccgtg
      901 atcatccgcg tgcagaccgg cccggcgatc aacggaaccg atctgcgcga tgccaccggc
      961 acgatcagct ttgagcaatt caccaaccag atcgactacc agaacgccgg ttacgcgatc
     1021 aacacggcga tgaaaaaggc agtcctgtcg aaggtcgaca cggccaagct gacgggcaag
     1081 accatttcgg ttgtcggcgt cttccagttg atcaacccga acggctggct cgtgacgccg
     1141 gtgaagctgg acgtgaaatg agcaccccga accaaaccca ccaaacccaa tccgcggccg
     1201 gcgaagtcct gctgtcggca cgcgacatcg tcaagtcgta cggcggcgtg catgcgctga
     1261 agggagtgaa cttcgacatc catcgcggta aggtcaccac cttgttcggc gaaaacggtg
     1321 cgggcaaatc gaccttgatg aagatcctcg ccggggtgga gacgccgaca tcgggacata
     1381 tcgaactcga tggtcagcgc gtcgcctttg cttcgtcaaa cgaggcgcgc gaccacggta
     1441 tctcgatcat tcatcaagag ttgagtctgg cgcccaacct cagcgtgcgc gacaacatct
     1501 tcatggggcg cgaactgcgc agcgcgacgg gcgtcaactt cgccgaagaa gcgcggcaag
     1561 cacgggcctt gatggctgat ctcgaggagg aaatcgaccc gttgacgcgc gtccaggact
     1621 tgcgcctggg ccagcaacag gtcgttgaaa ttgctcgcgc gctttccgtt caatcgcgca
     1681 tcctcatcat ggacgagccg acttcggcgc tgagcgcctc cgaggtcgag gtgctgttca
     1741 aggtcatccg cgacctgacc agccgcggcg tg
//
LOCUS       DATGBK010001774         1752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_298895, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001774 DATGBK010000000
VERSION     DATGBK010001774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298895"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1154)
                     /locus_tag="VKJ77_25005"
     CDS             complement(<1..1154)
                     /locus_tag="VKJ77_25005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel protein MscS"
                     /protein_id="HMC48601.1"
                     /translation="MKPSRIRALAGALVFAALVSSALTVFALNANAAPPGLTLPSFQE
                     LINKPAASSPGPASAAASGAADATASPASDVDLTRSLDTVISTLDNDRERTALVAQLK
                     KLRDAKRDAESSAPPAASSAASDGSGAAVLPEVAAASSASSTTAASSVVAAITPKTGL
                     LGAIASGLSSLEADFSRGRTPLNYWGGRLNAAGNELFTIVSGQSRESFGHTLLNFCLM
                     LAGWGVCAFLLVYLQRYLHARYKVHFGLRANPTTSELLIFALRRVGPYLFAFIAALTF
                     VRLMPVSLGRTLAMVTAYAIVAGAVFSSICLIMFSLFGSAHRRVAVHLLILHARRLLF
                     LIGTLGALGDAASDYDVAQQLGTNLSGLLSTVANMGAAILTGYFTLAFQRP"
     gene            complement(1321..>1752)
                     /locus_tag="VKJ77_25010"
     CDS             complement(1321..>1752)
                     /locus_tag="VKJ77_25010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018432274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48602.1"
                     /translation="EKHEAAAGQAAGALNNVASQAGQKFDQAANYVDQQVDSVKQSAQ
                     GNLQSAGTLPDMSASGVAAAARANLAGAASATNAAIINAASDTGAGLQSAGRKLQDWS
                     ASSALGQSGASGASGTSSGSSSSGSSATSADPGNARSDMDK"
BASE COUNT          351 a          566 c          554 g          281 t
ORIGIN      
        1 ggccgctgga acgccagcgt gaaatagccg gtcaggatcg cagcacccat gttcgcgacc
       61 gtcgagagga gcccggacag attagtgcca agttgttgcg ccacgtcgta gtccgacgcg
      121 gcgtcaccca gtgcgccgag cgtgccgatg agaaataaca gccgacgcgc gtgcaaaatc
      181 aacaggtgca ccgccacccg gcgatgcgcc gagccgaaca gcgagaacat gatcaggcag
      241 attgatgaaa acacggcgcc cgcgacaatc gcgtatgccg tcaccatcgc gagcgttcgg
      301 ccgagcgaca ccggcatcag acgcacaaaa gtcaacgctg caatgaacgc gaacaggtac
      361 ggcccgaccc gccgcagcgc gaagatcagt agctcgctcg tggtcggatt ggcacgcagc
      421 ccgaaatgaa ccttgtaacg cgcgtgtaag tatcgctgaa gataaaccag caaaaaagcg
      481 cagacgcccc aaccagccag catcaggcaa aagttgagca gcgtgtggcc aaaactctcg
      541 cggctctggc ccgagacaat ggtgaaaagc tcattgcccg cggcgttcag gcgaccaccc
      601 caataattaa gcggtgtacg accgcggctg aagtcggctt ccaggctcga cagcccggac
      661 gcgatcgcac cgagtagccc cgttttgggc gtgatagcag cgacgaccga cgacgctgcc
      721 gtcgtcgaac tcgccgacga ggccgcagcc acctccggca acactgccgc gccagaaccg
      781 tcggacgcag cggatgaggc agccggtggt gcggaggatt cggcgtcacg cttggcgtcg
      841 cgaagctttt tcagttgcgc gaccagcgcc gtgcgttccc ggtcgttgtc cagcgtggag
      901 atgaccgtgt cgagcgagcg cgtcagatcg acgtcgctgg ccggactggc cgtggcgtct
      961 gcggcgccgg aagccgccgc ggacgccggg cccgggctgg atgctgccgg tttgttgatg
     1021 agttcctgga acgacggcaa cgtgagcccc ggaggggcgg cgttagcgtt cagggcaaaa
     1081 acggtgagcg ccgagctgac caacgcggcg aataccagcg cgccagcgag cgcccggatg
     1141 cggcttggtt tcatggcggt gcgcaatagg caaaagaggt aaaagaccgc cagtttagcc
     1201 gctgcgctga aataatcttt agacaaaagg gtcacgcagg taacgagatg ttagcccgcc
     1261 aacgccgtgt ttaccgcgtt gaaaagcgcg gcaggttggg tgactccacc cggccgtcac
     1321 ctatttgtcc atatccgagc gggcgtttcc ggggtccgcc gacgtagcgg acgaaccgct
     1381 cgacgaactg cccgagcttg ttcccgatgc tccgctcgcc ccgctttgac ccaaagccga
     1441 gctcgccgac cagtcctgca atttgcgccc ggccgactgc aagcccgcac cggtatcgct
     1501 tgcggcgttg atgatagccg cgtttgtcgc gctcgccgcg cctgccagat tggcccgtgc
     1561 ggctgccgcc acgccgctcg ccgacatatc cggcaaggtg cccgccgact gcaggttccc
     1621 ctgcgcggac tgcttgaccg agtcgacctg ctgatcgaca tagttcgccg cctgatcgaa
     1681 tttctggcca gcctggctgg cgacattgtt cagcgcaccg gcggcctgcc ccgccgcggc
     1741 ttcatgcttc tc
//
LOCUS       DATGBK010001775         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_345153, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001775 DATGBK010000000
VERSION     DATGBK010001775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345153"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..756
                     /locus_tag="VKJ77_25015"
     CDS             <1..756
                     /locus_tag="VKJ77_25015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HMC48603.1"
                     /translation="DLPNPETLAALLQRITSDYSMIAASHRTAGRAALPRAAALSGNA
                     FLADITRVVSAQRFVRGLYAGSVVATIESTSTTLFATIRTSSFAPACSTGGTASIVAL
                     DPIAPFTATVLIDQQGAALDALDLSSARIVVAGGRGLASKENMDTLGALARNMGAALG
                     ASRAAVDAGYAPNAAQVGQTGKTVAPDIYLAFGISGAIQHLAGMKDSQVIVAVNKDPD
                     APIFSVADYGIVGDLFDVMGELDAHARATGNAS"
     gene            753..1358
                     /locus_tag="VKJ77_25020"
     CDS             753..1358
                     /locus_tag="VKJ77_25020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HutD family protein"
                     /protein_id="HMC48604.1"
                     /translation="MNAVFSEERFEEQASVRFFDCTRIAPEAWANGAGTTRTIARGPE
                     GAWRVSLAELSGAAKFSQFAGFDRTLTLFDDETVDLHSQDGQLNARAGQPVHFSGDLH
                     VWVTLPARPVNVLNVMTRRDTCSSRVSVATHSARITSASSQILFCVAGQWSIESALLR
                     DVSLRPLTGIWLDGLHEDIDMKPHGPDAQLVSIAIDQVALR"
     gene            1364..>1709
                     /locus_tag="VKJ77_25025"
     CDS             1364..>1709
                     /locus_tag="VKJ77_25025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HMC48605.1"
                     /translation="MDNHTLIEQYGPRESMEYDVVIVGGGPAGLSAAIRLKQLAQEKG
                     VELGVCVLEKGSEIGAHILSGAVMDPRGLSELLPDWKAQGAPLDVEVTEDRFLFLSKD
                     SAKQVPNWLLPDN"
BASE COUNT          323 a          524 c          528 g          334 t
ORIGIN      
        1 gacctaccca atcctgaaac gctcgccgcg cttcttcagc gtattacttc ggattactcc
       61 atgattgccg cgagccaccg cacggcggga cgcgcagccc ttccccgagc cgccgcgttg
      121 agcggcaatg cgtttctcgc ggacatcacg cgtgtcgtga gcgcgcagcg tttcgtgcgc
      181 ggcctctatg caggcagcgt ggtcgcgaca atcgaaagta cgagcaccac gctcttcgcg
      241 actatccgga cgtcatcgtt cgcgcctgcc tgcagcaccg gcggcacggc gtcgatcgtt
      301 gcgctcgatc ccatcgctcc gttcactgcg accgtgttga tcgatcagca gggcgcggcg
      361 cttgacgcgc tcgatctgtc gagcgcgcga atcgtggtcg cgggaggccg gggactggca
      421 tcgaaggaga atatggacac gctcggcgcg ttggcccgca acatgggcgc cgcgctcggt
      481 gcgtcgcgtg cggcagtgga tgcgggttat gcgcccaacg ccgcacaggt cgggcaaact
      541 ggcaagaccg tggcgcccga tatctatctc gcgttcggca tctccggtgc aatccagcat
      601 ctggccggga tgaaggattc acaggtcatc gtggccgtga acaaagaccc tgacgcaccg
      661 attttttcag tagcggatta cggtatcgtt ggcgatctct tcgatgtcat gggcgaactc
      721 gatgctcacg cacgtgcaac ggggaatgcg tcatgaacgc ggttttctct gaagaacgtt
      781 tcgaggaaca agcatcagtg cgcttcttcg attgcacgcg aatcgcacca gaagcatggg
      841 ccaacggtgc cggaacgacc cgtaccatcg cgcgcggacc ggaaggtgca tggcgcgtga
      901 gccttgcgga attgagcggc gcggcgaagt tctcgcagtt cgcaggcttc gatcgcaccc
      961 tgaccctgtt cgacgatgag actgtcgatc ttcattcgca agacggccag ttaaacgccc
     1021 gtgcgggaca gcccgtgcat ttttccggcg acctgcatgt atgggtcacg ttgcccgcgc
     1081 gtcccgtcaa cgtattgaac gtcatgaccc gccgcgacac atgcagctcc cgcgtaagcg
     1141 tggccacgca ttccgcgcgc atcacgtccg cgtcatcgca gatcctgttt tgcgtagccg
     1201 gacaatggtc gatcgaaagc gcgttgttac gcgacgtctc gctgaggccg ctcacgggca
     1261 tctggcttga tggcttgcac gaagacatcg atatgaaacc gcacggtccg gatgcacagc
     1321 ttgtgtcgat tgcaatagat caggtagccc ttcgatgagc gccatggata accacacact
     1381 catcgagcag tatggtcccc gtgaatccat ggagtacgac gtcgtgatcg tgggcggcgg
     1441 tcctgcgggg ctatcggccg ctatccggct gaagcagctc gcgcaggaaa aaggcgtcga
     1501 actcggcgtc tgcgtgctgg agaaaggctc cgagatcggc gcgcacatcc tctcgggcgc
     1561 cgtgatggac ccccgagggt taagcgaatt gctccccgac tggaaggccc agggtgcgcc
     1621 gctcgatgtg gaagtcaccg aagaccgctt cctgtttttg tcgaaggata gtgcaaagca
     1681 agtcccgaac tggctgctcc ccgacaact
//
LOCUS       DATGBK010001776         2080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_136824, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001776 DATGBK010000000
VERSION     DATGBK010001776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136824"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VKJ77_25030"
     CDS             <1..218
                     /locus_tag="VKJ77_25030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007746880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent formate dehydrogenase"
                     /protein_id="HMC48606.1"
                     /translation="MTPHTSGTTLSAQARYAAGTREILECWFAKEPIREEYLIVDGGR
                     LAGVGAHSYSAGNATSGSEEAARFKKA"
     gene            284..787
                     /locus_tag="VKJ77_25035"
     CDS             284..787
                     /locus_tag="VKJ77_25035"
                     /inference="COORDINATES: protein motif:HMM:NF016843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPP family protein"
                     /protein_id="HMC48607.1"
                     /translation="MNEQIARAAPAVPLAPFKQAAFGFLGGFLAIGVISLLGHLTSSP
                     LVIAPFGASSVLLFGAPDSAFAQPRNLVFGHLLSTAVGLAVYWFAGPGVWQMALSVGL
                     AIALMQLARCVHPPAGADPLVIMLSGNASIGFFFVPVLSGVCLLLVIALLFNNVVRGR
                     RWPERWL"
     gene            complement(851..1639)
                     /locus_tag="VKJ77_25040"
     CDS             complement(851..1639)
                     /locus_tag="VKJ77_25040"
                     /EC_number="4.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007749254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HMC48608.1"
                     /translation="MAHSLSVGSSPAPSRIARLDSDAVMQARIELAACFQLAAQRGYE
                     EGVCNHFSAVVPGHDDLFLVNPYGYAFAEITASRLLVCDFEGHVIAGEGQPEATAFYI
                     HARLHRSKPRVKAAFHTHMPNATALCLIEGPPLLWLGQTSLKFYGRTAVDEDYNGLAL
                     DESEGDRIADAMGDADILFLKNHGVMVAGASIAEAWDDLYYLERAAEVQLKAMSSNQP
                     LKPVPHEVAQRTYEQMRLGDAQSARAHLDSSIRILRNQRNGFEQ"
     gene            complement(1662..>2080)
                     /locus_tag="VKJ77_25045"
     CDS             complement(1662..>2080)
                     /locus_tag="VKJ77_25045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014973171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HMC48609.1"
                     /translation="DSISAMPPFPEVTGALQRLREAGYRLCIVSNTDDEIIAGNVAQL
                     GGLIDRVVTAQQAGAYKPSRKIFDYAFDSLGVTSDDVVHICASPHLDHAAAREVGFRC
                     VWIDRGTGRTMLPDYTPDATLATLEQVPVLFNRLGW"
BASE COUNT          409 a          602 c          609 g          460 t
ORIGIN      
        1 gcatgacgcc gcatacgtca ggcacgacgc tttccgctca ggcgcgctac gcggcaggca
       61 cgcgcgagat tcttgagtgc tggtttgcca aggaacccat tcgcgaagag tatctgatcg
      121 tcgacggcgg gcgtctcgcc ggcgtgggcg cgcattcata cagcgcaggc aatgcgacct
      181 ccggctcgga agaggcagcc cgcttcaaga aggcttaacg ccgtgggcac gctggtccgg
      241 cttttgaggg tcagcgtgcg catttccata ggctttaaac acaatgaacg aacagatcgc
      301 ccgcgcggcg cccgcagttc ctttagcgcc atttaaacaa gcggcattcg gtttcctggg
      361 tggttttctg gcgattggcg tgatctccct gctcgggcac ctgacgagca gtcccttggt
      421 gattgcgcca ttcggtgcgt ccagcgtcct gctattcggc gcacccgata gtgcattcgc
      481 gcagcctcgc aacctcgtgt tcggacatct gctttccact gcggtcggat tggcggtgta
      541 ttggttcgcc ggtccagggg tatggcaaat ggcgctgtca gtagggctcg ctattgcttt
      601 gatgcagctc gcccgttgcg tgcatcctcc ggcgggtgct gatccgctgg tgatcatgct
      661 tagcggtaac gcttcgatag gattcttttt tgttcctgtc cttagcggcg tttgtctgct
      721 gctggttatc gcattgctgt tcaataatgt cgtgcgcggc cggcgatggc ccgagcgatg
      781 gttgtgacat ggttatccgt tagcagcaac gcgttgtcgc taacggataa ctgcatattc
      841 acgcttacgt ttactgttcg aacccgttgc gctggttgcg caatattcga atcgagctgt
      901 ccagatgcgc acgggcactt tgtgcatcgc ccaagcgcat ttgttcatac gtgcgctgtg
      961 ctacttcgtg cggcacgggc ttgagcggtt ggttgctgct catggcctta agctgaacct
     1021 ctgccgcgcg ctcaagataa tagagatcgt cccaagcctc cgcgatgctc gcgcccgcca
     1081 ccatcacgcc gtggttcttc aggaacagga tgtcggcgtc gcccatggca tcagcaatac
     1141 ggtctccctc cgactcatcc agtgcgaggc cgttgtaatc ctcatcgacg gcagtgcggc
     1201 catagaactt caacgacgtt tgcccgagcc acaaaagcgg cggcccttcg atcaggcaca
     1261 acgccgtcgc attcggcata tgcgtgtgga aagcagcttt tactcgcggt tttgaccggt
     1321 gcaatcgtgc gtggatataa aacgcggtgg cttccggctg gccttcacca gcgatcacgt
     1381 gcccttcgaa gtcgcaaacg agcaggcgcg atgcggtgat ctcggcaaac gcataaccat
     1441 acggattgac gagaaacaga tcgtcgtgcc cgggcacgac tgccgagaaa tgattgcaca
     1501 ccccttcttc gtaaccccgt tgcgccgcaa gctgaaagca cgcggcaagt tcgatgcgcg
     1561 cctgcatgac ggcgtcggaa tcaagccgcg caatacgcga gggagcaggg gagctgccga
     1621 cagaaagcga gtgagccatg atgattgatt accttgaaaa tttaccagcc gagtctattg
     1681 aatagcacag gtacttgttc gagcgtcgca agcgttgcgt cgggtgtgta atccggcagc
     1741 atcgtgcggc ccgtaccacg atcgatccac acgcagcgaa agccgacctc gcgagcggcc
     1801 gcatgatcga ggtgcgggct ggcgcaaata tgaacgacgt cgtcgctggt cacgccaagc
     1861 gagtcaaaag cataatcgaa tattttccgc gatggtttgt aagcgccggc ctgctgcgcc
     1921 gtgacgactc gatcgatcaa cccgccaagc tgcgcgacat tgccggcaat gatctcgtca
     1981 tccgtattcg acacaataca caaacgataa ccagcctccc taagccgttg caaagcaccg
     2041 gttacttcgg gaaagggcgg catggctgag atgctgtctg
//
LOCUS       DATGBK010001777         2299 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_159934, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001777 DATGBK010000000
VERSION     DATGBK010001777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159934"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..418
                     /locus_tag="VKJ77_25050"
     CDS             <1..418
                     /locus_tag="VKJ77_25050"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HMC48610.1"
                     /translation="SALETLPAHIANIKAQAARVGRTVRTVINPVIVSRDTEREANDY
                     AEAIARHAIKGAFGGFDSDAHAWRGRQDASHKQGLGLGGNIEIVGTPDQVVEQLAALK
                     AAGIDGVQLGFYDFLPDLEYFGEHILPRLKQAGLRL"
     gene            466..1488
                     /locus_tag="VKJ77_25055"
     CDS             466..1488
                     /locus_tag="VKJ77_25055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019572591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HMC48611.1"
                     /translation="MTIYRNLGRSGIKVSPLCLGTMMFGGQTDEPTARRITDKAFEQG
                     VNFIDTADGYAGGASEEVVGRLIAERRYSWVLATKIASPRGDGPNDRGASRKYIIEAV
                     DRSLKRLGGGYIDLLYLHREDHDTPVVETVRALDDLIRAGKIRHYGLSNHRAWKLAEF
                     SRTADALGVDRPIASQPLYNLANRQVEIEQLEAADYYGLGVVPYSPLARGVLTAKYQP
                     DQVPEAGTRAGRQDKRLQQTEWRPESLTLAQQVKRHAEERGITPGQFALAWVLNNKLI
                     TAAITGPRTEAQWDDYLPALEYRFTAEDEAFVDSLVTPGHASTPGFNDPGHPFFGRQP
                     RTSVNK"
     gene            1657..>2299
                     /locus_tag="VKJ77_25060"
     CDS             1657..>2299
                     /locus_tag="VKJ77_25060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48612.1"
                     /translation="MTQSTENTPVKRLWYTRCPAPTPFGIAIQQGWLQEEFRNDGIDI
                     QALQDSSDPVIRQSHFTHSQAHSFRQGGNIPALWARAQGADTRVIGLSWVDEFQGLVA
                     LPSTGIEGPADLRGRRFGLPRNTRAKVVDFHRATALRGFVTLLGAVGLTLDDVQLVDL
                     PTAPRGLADEPAVLDSGAARLLATERGQEFSFEALALARDEVDVVFVKGASGLE"
BASE COUNT          439 a          740 c          702 g          418 t
ORIGIN      
        1 cagcgcgctg gagacgctgc ccgcgcatat tgccaacatc aaggcgcagg ccgcacgagt
       61 gggccgcacg gtgcgcaccg tgatcaatcc cgtgatcgtg agccgtgaca ctgaacgcga
      121 agcgaacgac tatgccgaag cgattgcccg tcatgcgatc aagggcgcat tcggcggttt
      181 cgacagcgac gcccatgcat ggcgtgggcg ccaggatgcg tcacataagc aaggcctggg
      241 tctcggcggc aacattgaga tcgtgggtac gcctgatcag gtcgtcgagc aactcgccgc
      301 gctgaaagcg gcggggatcg acggtgtgca gcttggcttt tacgactttc tgcccgacct
      361 ggagtacttc ggcgagcaca tccttccgcg gttgaaacaa gcaggcttgc ggctctgatc
      421 ggaccgccgg cacccctccc ttcattcgtc accatagaga acccaatgac aatttatcgc
      481 aacctcggtc gcagcggcat caaggtatct ccgctgtgcc tcggcaccat gatgttcggc
      541 ggccagacgg acgagccgac cgcgcgccgc atcacggaca aggccttcga acaaggcgtc
      601 aacttcatcg ataccgccga cggatacgcc ggcggcgcct ccgaagaggt cgtcggccgg
      661 ctgatagcgg aacgtcgcta cagctgggtg ctggccacca agatcgccag tccgcgcggt
      721 gacggcccga acgatcgcgg cgcctcgcgc aagtacatca tcgaagcggt ggaccgcagc
      781 ctgaagcgtc tcggcggcgg ctatatcgac ctgttgtatc tgcatcgcga agaccacgac
      841 acgcccgtcg tggaaaccgt ccgcgcactt gacgacctga tccgcgcggg caagatccgt
      901 cactacggtc tgtcgaatca tcgtgcatgg aaactcgccg aattcagccg caccgcggat
      961 gcgctcggtg tcgaccggcc tatcgcttcg cagccgcttt ataacctcgc aaaccggcaa
     1021 gtcgagatcg agcagctcga ggcggctgat tactatgggc tcggcgttgt gccttacagc
     1081 ccgcttgcgc gtggtgtgct cacagcgaaa taccagcctg accaagtccc cgaagccggc
     1141 acgcgtgccg gtcggcagga caagcgcttg caacagacgg aatggcgtcc ggaatcgctc
     1201 acgctcgcgc agcaggtcaa acgccatgct gaagagcgcg gcatcacacc gggacagttc
     1261 gcgcttgcat gggtgctgaa caacaagctg atcacggcag ccatcaccgg gccgcgcact
     1321 gaggcgcaat gggacgatta tctgcctgcg ctcgagtatc gctttactgc ggaggacgaa
     1381 gcgttcgtgg attcgctggt gacgccgggc cacgcttcca caccgggttt caacgatccg
     1441 ggccaccctt tctttggccg tcagccgagg acgtccgtca acaagtgatg ccacgcgatg
     1501 acttcggata tcagcatgcg cctcatatat ttacgacgaa tgcttcgtat gcgcagtcat
     1561 cgtgactctc taagatcaag agctggtttg cttcgccacg gtcacggggc gaagcgttgc
     1621 cctcttcgct ccaaccccac tttccctgga tgcgccatga cccaatcgac cgagaacacg
     1681 cccgtcaaac gtctttggta cacgcgttgc cctgcaccca ctccgttcgg catcgccatc
     1741 cagcaaggct ggctgcagga agagtttcgc aacgacggca tcgacatcca ggcgctgcag
     1801 gattccagcg accctgtcat ccggcaatcg cacttcacgc attcgcaagc gcattcgttt
     1861 cgccagggcg gcaacattcc cgcgctgtgg gcacgggcgc aaggtgcgga cacgcgcgtg
     1921 atcgggctct cgtgggtaga cgagtttcaa gggctggtcg ctctgccttc aaccggtatc
     1981 gaagggccgg ccgacctgcg cgggcgacgc ttcggcctgc cgcgcaatac ccgcgcgaag
     2041 gtggtcgact ttcatcgcgc gaccgcgctg cgcggcttcg tcacgctgct cggcgcggta
     2101 ggcctcacgc tggacgacgt gcagttggtc gatcttccga ccgcgccgcg cggtctcgcc
     2161 gatgaacccg ccgtactcga tagcggcgcg gctcgtttgc tcgctaccga acgtggccag
     2221 gaattcagct tcgaagcgct ggcgctagcg cgcgatgaag tcgatgtggt tttcgtcaag
     2281 ggtgcgagcg gactggaag
//
LOCUS       DATGBK010001778         4780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_298931, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001778 DATGBK010000000
VERSION     DATGBK010001778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4780
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298931"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..732)
                     /locus_tag="VKJ77_25065"
     CDS             complement(151..732)
                     /locus_tag="VKJ77_25065"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HMC48613.1"
                     /translation="MRDADWIELDRLVEDAMKCWAIPGLAIAVVQGDDTILLKGYGVR
                     ELGASAAVTPDTQFMICSLTKSINAAGIALLVDEQRLNWDTRVREILPEFQLRDPAAT
                     DAITVADLLAHRSGLPRHDRIWSLPEARSREWILDAMRYLESSRPLREAYQYSNLGYI
                     VASMVAERLSGQSWEQFTTQRLLSPLGFRKFDA"
     gene            complement(746..1549)
                     /locus_tag="VKJ77_25070"
     CDS             complement(746..1549)
                     /locus_tag="VKJ77_25070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004528234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase Amj family protein"
                     /protein_id="HMC48614.1"
                     /translation="MDSQLLVICGLTFVIHVIATLAYAVRIAGVRTGRIAVSFSLFGI
                     IALVSRTANSFQGPFIAKRVELDIAHHLGSGLLNDFRLLLLTATIASIAGSFLIPTFQ
                     RYFSRAVDHFQANRSIPRLLLHVFSRAGLNYIRTGARLPSRHNVTQLAASAGVSWTVI
                     GLNVVAMAIWTVGVFASLYAGYLKPELRVTCANLSSVINGFATVVLAVIIDPQVSVMT
                     DDVIEGRISENSFRRAITTLAGARVLGTLCAQAVLVPAAIVIVHVAELI"
     gene            complement(1672..2355)
                     /locus_tag="VKJ77_25075"
     CDS             complement(1672..2355)
                     /locus_tag="VKJ77_25075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC48615.1"
                     /translation="MDKVAMISGANRGIGLAVATELHRRGYRLSLGMRDPSSAHIPFD
                     AFTFAYEARDPLSGRRWVDATIEHFGRIDVLINNAGICTHITLEDGTDELLEETLDIN
                     VKAPFRLIQAALPHLRKPGDARVVQIASLSGKRVKNLNAGYQMSKHAVIALNHAVRRA
                     GWNDGIRATAICPGFVNTDMAAEIADLEPQAMTQPEDLALLIANTIAMPNTANVAEIL
                     VNCRHEDLF"
     gene            complement(2371..3711)
                     /locus_tag="VKJ77_25080"
     CDS             complement(2371..3711)
                     /locus_tag="VKJ77_25080"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC48616.1"
                     /translation="MGPPVETVTDDTTLPDEVDVVVVGGGIIGVSTALYLSDKGLRVA
                     VCEKGYIAGEQSSRNWGWVRVTHRDMREFELSIESLKLWRTLDQRLGIDTGFKQCGIL
                     YMANDDAKMEGHRVWLEKARALAGNDAFDTREVDPKTVAGLLPGATKVFKGGLYTPGD
                     GRAEPQKAAPAIANALRKRGVKILTPCAVRGVETSAGRVSAVVTELGTIRCKSVVVAG
                     GAWSRLFCGNLNVNVPQLMVKASVLRTAPIEGGPSVSASNKEFSFRKRADGGYTIAFG
                     FRTYTDITPDSFRLLPKYIPALKSQMGAMRIGLGARFFDELRRPRHWALDKRTAFEEI
                     RTLDPEPISAYTDAGLREFVKVFPHMSGARIAQRWAGLMDVTPDAIPVISGVESVPGL
                     FISTGFSGHGFGIGPAAGKLMADLVTNDTPLVDPHMFRLSRFSDGTKIVIDAGF"
     gene            complement(3732..4526)
                     /locus_tag="VKJ77_25085"
     CDS             complement(3732..4526)
                     /locus_tag="VKJ77_25085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC48617.1"
                     /translation="MNAFLQNFLDWQLLTGSLPSLLETGLVNTLVLSLFSTLLGIIAG
                     MVLALMAVSHMRWLEVPARVFVEVFRGLPAALVILLVGQGLAPVGLAIFGPNPYPLAI
                     VALGLISSAYIAEIFRSGIQSVGKGQLSACQALGMTYWTAMRHVIVPQGIRRILPALA
                     NQFISIVKDSSLVYFLGLLTSQRDLFTIGQNTSVNVANLSPLVAAGLVYLLITVPLTH
                     AINHIDRWTNRHSNPRYGGASTATTRKQLKRQAAAAARAGMAEQHN"
     gene            complement(4557..>4780)
                     /locus_tag="VKJ77_25090"
     CDS             complement(4557..>4780)
                     /locus_tag="VKJ77_25090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48618.1"
                     /translation="YPQLNLADKLDISAINLPAGFPIRKGNAKLEAAVNKTLNELVAD
                     GTWMKLYTQFHPGYPKPASLPPYEMKTGS"
BASE COUNT          994 a         1474 c         1376 g          936 t
ORIGIN      
        1 ggcgatctct gccgtgctct tgctgttgtc gtccgccatc gcgttctgga gccgggccgg
       61 cttggcgctg accgcacaga ccagttgagc caagactgcc gccgccgggc acccgggcgt
      121 tttagtcgcc cagcaaggcc agcgatccag ctacgcatcg aatttcctga agcccagagg
      181 cgacaaaagg cgctgcgtcg tgaactgttc ccaactctgc ccgctgagcc gctcggcgac
      241 catgctcgcg acgatgtaac cgaggttcga gtactggtac gcctcgcgca gaggccggct
      301 cgattccaga taacgcatgg catccaggat ccattcccgc gaccgcgctt ctggcagcga
      361 ccatatgcgg tcgtgacggg gcagcccact acgatgcgca agcagatcgg cgacagtgat
      421 agcgtcagtc gcggccggat cgcgaagctg gaattccggc agtatttcac gcacgcgcgt
      481 gtcccaattc aaccgctgtt cgtcgaccag tagcgcaata ccggcggcgt tgatcgattt
      541 ggtcagcgag cagatcatga attgggtgtc gggcgtcacc gcagcgctcg cgcccagttc
      601 acgtacacca taacccttga gcagaatggt gtcgtcgcct tgaaccacgg cgatggcaag
      661 gccgggaatg gcccagcact tcattgcatc ttcgacaaga cggtccagtt cgatccaatc
      721 ggcgtcgcgc atctctctca ccgtgctaaa tgagttcagc tacgtggaca atgacaattg
      781 ccgccggaac gagcactgcc tgcgcgcaca gcgtaccgag aacgcgcgcg cccgcgagcg
      841 tcgtgatcgc ccgccgaaaa ctgttttccg aaatcctgcc ttcgatgacg tcgtcagtca
      901 ttacggaaac ttgcgggtcg atgatgaccg ccagtacgac ggtcgcaaag ccgttaatga
      961 ccgacgacag attcgcgcat gtcactcgca gctcgggctt caggtatccc gcatacagcg
     1021 atgcgaacac cccaaccgtc cagatcgcca ttgcgacaac gttcagcccg ataactgtcc
     1081 aggatacccc ggcgcttgcg gccagttgcg taacgttgtg tcgagaagga agccgcgcgc
     1141 ccgtccgaat gtagttaaga ccggcacgac tgaagacgtg cagcagcaga cgaggaatcg
     1201 agcggtttgc ctggaagtga tcgaccgcgc gactgaagta acgctggaac gtgggaatca
     1261 ggaacgaccc cgcaatgctt gcgattgtgg cagtcagcag gagcaaccga aaatcgttga
     1321 gcaatccgct gcccaaatga tgcgcaatat ccagttcgac ccgtttcgcg atgaacggcc
     1381 cttgaaagga attagctgtc cgggaaacca gcgcaataat cccaaaaagg gaaaacgaca
     1441 cagcgatgcg tcccgtgcga acacctgcaa ttcgcacggc ataggccaat gttgcaatca
     1501 cgtggattac aaatgtaagc ccgcagatga ccagaagctg gctgtccatg ctagtgcggc
     1561 gtgtgtgtgg ctgggacatg agtgtacccg agccaagtat cgacccgatg gtcgacgatc
     1621 cttgtttagc caatcgagtg accgcgactg gccggctgcc atattcagag gttagaacaa
     1681 gtcctcgtgc cggcaattca ccaggatctc cgcgacgttc gcggtattcg gcatcgcaat
     1741 agtgttcgct atgagcaagg ccagatcctc gggctgggtc atcgcctgag gctcaaggtc
     1801 ggctatctcc gccgccatgt cggtattcac gaagcctggg cagatggcgg tcgcgcgaat
     1861 gccgtcattc cagcctgctc gccgcacggc atgattcaac gcgatcactg catgcttcga
     1921 catctggtaa cccgcgttca ggttcttcac gcgctttccc gatagcgatg caatttgtac
     1981 gacgcgtgca tcgccgggtt tgcgaagatg cggcaacgcg gcctggatca ggcggaaggg
     2041 cgccttcacg ttgatatcga gcgtttcttc cagcaactca tccgtgccgt cctcaagcgt
     2101 gatgtgcgtg cagattcccg cattgttgat cagcacatcg atgcggccaa agtgctcgat
     2161 ggtcgcgtcg acccagcgtc gtccgcttag cggatcgcgt gcttcatacg caaacgtgaa
     2221 tgcatcgaag ggaatgtgcg ccgacgacgg gtcccgcatg ccgagcgaca gccgataacc
     2281 ccgccggtgc aattccgtcg ctaccgccag gccgatgccg cgattcgcgc cggaaatcat
     2341 cgctaccttg tccatgctcg atatccttgc tcaaaatccc gcgtcgataa cgatcttcgt
     2401 gccgtcactg aaacggctta accggaacat gtgcggatcg acgagcgggg tgtcgttggt
     2461 gaccaggtcc gccatcagtt ttcccgcggc cggaccaatg ccaaaaccat gccctgaaaa
     2521 cccggtgcta atgaaaagcc ccggcacgct ttcaacgcct gatatcacgg gtatggcatc
     2581 aggcgtcacg tccatgagac cggcccaacg ctgcgcgatg cgtgcaccgc tcatatgcgg
     2641 gaataccttt acgaactcac gcaggccggc atcggtatag gcggaaatag gctcggggtc
     2701 gagggtgcga atttcctcga aagcagtccg cttatcaagc gcccaatgac gcggccgacg
     2761 cagttcatcg aagaaacgcg cgcccaatcc aatccgcatt gcgcccatct gactcttgag
     2821 cgcgggaata tatttaggaa gcagccggaa gctgtcaggc gtgatatccg tgtaagtacg
     2881 aaagccgaac gcgatcgtat aaccgccgtc cgcgcgcttg cggaacgaga actccttgtt
     2941 gctggcgctc accgagggac cgccttctat cggcgctgtc cgcaacacgg aagccttcac
     3001 catcaactgc ggcacattga cattcaggtt cccgcagaaa agccgcgacc acgcgccgcc
     3061 cgcaaccacc acgctcttgc agcggattgt tcctagctcg gtcaccaccg cgctgacgcg
     3121 tcccgcgctt gtttccacgc cgcgcaccgc gcagggcgta agtattttca cgccgcgttt
     3181 gcgcagcgca tttgcaatag ccggcgcggc tttctgcggt tcggcgcggc catcgccggg
     3241 cgtgtacaga ccgcccttga acaccttcgt tgcacccggc agcaaaccgg caacggtctt
     3301 gggatcgact tcacgggtat cgaatgcatc gttccccgct aatgcgcgcg ccttttcaag
     3361 ccatacgcga tgcccctcca tcttcgcgtc gtcgttggcc atgtacagga tgccgcattg
     3421 cttgaaaccg gtatcgatgc caagcctctg gtcgagcgtg cgccacagct tcaggctttc
     3481 aatactcagt tcgaactcgc gcatgtctcg atgcgtgaca cgcacccagc cccagttgcg
     3541 gctggattgt tcgcccgcga tatagccctt ctcgcatacc gccacacgca ggcctttgtc
     3601 gcttagatac agtgccgtac tcacgccaat aatcccgcca ccgaccacca cgacatccac
     3661 ttcgtccggc aaggtggtgt cgtcggtgac ggtttcgact ggtggtccca taagcttgtt
     3721 attccgtgcc tttagttgtg ttgttcggcc atgcccgcgc gcgcggctgc tgcggcctgg
     3781 cgcttgagtt gcttgcgcgt ggtagccgtg cttgcgccgc cgtaacgcgg attcgaatgc
     3841 cggttggtcc agcggtcgat atgattgatc gcgtgcgtga gcggcacggt aatcagcaag
     3901 tagacgagcc cggccgcgac cagcggcgaa aggtttgcta cgttcaccga cgtgttctgt
     3961 ccaatggtga acaggtcgcg ttgcgaggtt agcaagccga ggaaataaac gaggcttgaa
     4021 tccttcacga tcgaaatgaa ctggtttgcc agcgcgggca gaatgcgccg aatgccttgc
     4081 ggaacgatca catgacgcat ggcggtccag tacgtcatgc cgagcgcctg acacgcggag
     4141 agctgcccct tgcccacgct ctgaatgccc gagcgaaaaa tctccgctat atacgccgat
     4201 gaaatcagcc cgagcgccac gatggctagc ggatatggat tcgggccgaa gatcgccagt
     4261 ccgaccggcg ccagtccttg ccccacgagc aggatcacga gcgcggcagg cagaccgcga
     4321 aagacctcga cgaacacgcg cgccggcact tcgagccagc gcatatgcga caccgccatc
     4381 aacgccagca ccatgcccgc gatgatcccg agcagggtcg agaacagcga cagcacgagc
     4441 gtgttgacca gcccggtttc gagcagcgaa ggcagcgatc ccgtgagcaa ttgccagtcg
     4501 aggaagttct gcaggaatgc gttcatggcg ctctccggat catgtcggtg acaaggtcag
     4561 ctaccggttt tcatctcgta cggcggcagg ctggcgggct tcggataacc cggatggaac
     4621 tgcgtataga gcttcatcca ggtgccgtcg gccaccaact cgttaagcgt cttgttgacc
     4681 gccgcttcga gcttcgcgtt gcctttgcgt atcggaaatc ctgcgggcag gttgatcgcg
     4741 gaaatatcca gcttgtcagc aagattcaac tgcgggtact
//
LOCUS       DATGBK010001779         1905 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_136871, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001779 DATGBK010000000
VERSION     DATGBK010001779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136871"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..642)
                     /locus_tag="VKJ77_25095"
     CDS             complement(<1..642)
                     /locus_tag="VKJ77_25095"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC48619.1"
                     /translation="MTPCCAGLSRQPAFDAPHVGEPLDVAFDAGVNLAFAIAAPTVPP
                     RLTEHSQRMAQRIYRVAERVYCAVGYAIANIIFVVGDDGIVVIDTTEAVSAAKRIYED
                     FCAIDPRHAQLPVKAVVYTHNHTDHTGGVRAFANEAQLAAGSIEIIAHSSLMETVINN
                     ANMVAPILAARSAYSFGTLLPAGPTGKVNAGIGPVLIAEAASFLAPTRVFDDTL"
     gene            complement(712..1395)
                     /locus_tag="VKJ77_25100"
     CDS             complement(712..1395)
                     /locus_tag="VKJ77_25100"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC48620.1"
                     /translation="MTPPQPRSRAAVESALAVPRQARSQIGLEKMLQAGRELIEASGN
                     LDDLSITDIVERSRTSIGAFYRRFDSKDMFFDVVLDRAMTEGRNRVRDMVASEPEWRS
                     GDARKVADAIVEMYVHSFRRNRGLFHASLLRVSRPRATWDIVKEANRDVLTLIVPPLV
                     AAIVKERNARKADAGPIEFEVQAALQLILGMLVNIVLNDPGPLPLTSRRLAPWLKTQF
                     CRCLILATP"
     gene            complement(1522..>1905)
                     /locus_tag="VKJ77_25105"
     CDS             complement(1522..>1905)
                     /locus_tag="VKJ77_25105"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48621.1"
                     /translation="PVALSALREFPLVSVSLPGFMKDALHRLLKYRAHEEIPLQVECN
                     DVAVLKEVVARTDAVLFATASAVRRELEVQRLARIPLSHPPKLSLEFALVSLAERTHS
                     PAASAALALAEEVMDGANTAARGLM"
BASE COUNT          386 a          585 c          579 g          355 t
ORIGIN      
        1 cagcgtatcg tcgaacacgc gcgtgggcgc gagaaaactc gccgcttcgg cgatgagcac
       61 cggcccaatc cctgcattga ctttgccggt cgggcctgcg ggcagcagcg tgccgaagct
      121 gtacgccgag cgcgcggcga ggataggcgc gaccatgttc gcgttgttga tgaccgtttc
      181 catcaacgag ctgtgcgcga tgatctcgat acttcccgcc gcgagttgcg cctcattggc
      241 gaacgcccgc accccgccag tgtggtccgt gtggttgtgc gtgtacacca ccgccttcac
      301 cggcaattgc gcgtgacgcg gatcgattgc gcagaaatcc tcataaatgc gcttcgctgc
      361 cgatactgct tcggttgtat cgatcaccac aatgccgtcg tcgccgacca cgaagatgat
      421 gttcgcaatc gcatagccga cggcacagta cacgcgctcc gccacgcggt aaatgcgctg
      481 agccatgcgc tgcgaatgtt ccgtcaagcg cggcgggacc gtcggtgcgg caatcgcgaa
      541 ggcgaggttc acgccggcgt cgaacgcaac atcgagcggc tcgccaacgt gtggcgcgtc
      601 aaaagcaggt tggcgtgata agccggcgca acatggggtc atggatgtct ccttgcggca
      661 atcgaaagta acaacggaat cggaattcct gttccttttt tggtgaaaaa atcagggagt
      721 agccagaatc aggcaacggc aaaactgtgt cttgagccag ggcgcgaggc ggcggctcgt
      781 cagcggcaat gggccgggat cattcagaac gatgttgacc agcatgccca ggatcagttg
      841 aagcgcggcc tgtacctcga actcgatcgg ccctgcatcc gcttttctcg cattgcgttc
      901 tttcacgatt gcggcgacga gcggcggcac gatcaacgta agcacgtcgc ggttcgcttc
      961 cttgacgatg tcccacgtcg ctcttggccg tgagacgcgt aacagcgacg cgtggaacag
     1021 tccgcggttg cgtcgaaacg agtgcacata catctcgacg atcgcgtccg cgaccttccg
     1081 tgcgtctccc gagcgccatt cgggctcgct ggccaccatg tcgcgaacac ggttgcgacc
     1141 ttcggtcatt gcgcggtcga gcaccacgtc gaaaaacatg tccttgctgt cgaaacgccg
     1201 atagaacgcg ccgatcgagg tacgcgagcg ttcaacgata tccgtgatgg acagatcgtc
     1261 cagattgcca ctcgcctcga tcagctcgcg gccggcctgt agcatctttt ccagcccgat
     1321 ctggctgcgc gcctgccgcg gtaccgcgag agcggattca actgctgcgc ggctgcgtgg
     1381 ctggggtggg gtcatggggc cttgtgagcg acgttgcatg aagatgctgc ataaaaacgg
     1441 aatctggatt ccggatcctc ggcgaacacc agcactttgt caacccggcc aagggaaagc
     1501 cctaagcatg gcgtaaggcg attacatcaa tccgcgcgca gccgtattgg cgccgtccat
     1561 gacttcctcg gccaacgcca gcgccgcgct ggcggcgggc gaatgcgttc gctcggccag
     1621 ggacacgagt gcgaactcaa ggctcagttt tggcggatgg gaaagcggaa tacgcgcgag
     1681 acgctgaacc tccagctcgc gccggactgc cgacgccgtc gcgaacaaga ccgcatccgt
     1741 tcttgccacg acctccttaa gtacagcgac gtcattgcac tcgacctgca acggaatttc
     1801 ctcgtgcgcg cgatacttga gcaagcgatg cagcgcatct ttcataaacc caggcagcga
     1861 cacggaaacg agcggaaact cccgcaacgc ggagagcgca accgg
//
LOCUS       DATGBK010001780         1622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_276409, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001780 DATGBK010000000
VERSION     DATGBK010001780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276409"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..591
                     /locus_tag="VKJ77_25110"
     CDS             <1..591
                     /locus_tag="VKJ77_25110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016445232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48622.1"
                     /translation="KHSLRALFADSRMWWMSLIYFAFVTGQYGLTFWMPTFIKSTGVS
                     GAFNIGLLSAIPFLVAIVVMNVLGHSADKRRERRWHLIVPALAAAVGFSVAASFAGST
                     VVSIIALSVAAAGVLTCAPLFWSLPTAFMSGAAAAAGIAVINSIGNLAGFASPYMIGY
                     LKDLTHSTATGMYVLAAMLVIGAIATWLVPAKLVNR"
     gene            614..1411
                     /gene="otnI"
                     /locus_tag="VKJ77_25115"
     CDS             614..1411
                     /gene="otnI"
                     /locus_tag="VKJ77_25115"
                     /EC_number="5.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-tetronate isomerase"
                     /protein_id="HMC48623.1"
                     /translation="MPRFAANLTMMYTEHAFLDRFAAAAKDGFKAVEFLFPYDFAAAE
                     IKARLDEHGLTQALFNAPPGDWAAGERGIASLPGREDEFARALDKALEYTAVLGNKTL
                     HVMAGLITPEQSREKHRAVYLKNLELAANAARAAGITVVIEPINTRDIPGFFLNRQDD
                     AQAICEEIGVPNLKVQFDCYHCQIVEGDLAVKLRRDMKRPHAGIGHIQIAGVPERHEP
                     DLGELNYPYLFDLIDSLGYDGWIGCEYRPKAATSDGLGWIKPYLQRA"
     gene            1419..>1622
                     /locus_tag="VKJ77_25120"
     CDS             1419..>1622
                     /locus_tag="VKJ77_25120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HMC48624.1"
                     /translation="MNILITGGAGILGQRLARRLLERGNLMGQPITGLTLLDVVRPPD
                     LGDKRVRAETGDIADRSVLERCIG"
BASE COUNT          294 a          476 c          518 g          334 t
ORIGIN      
        1 aaacattcgc tgcgcgcgct gttcgccgat agccgcatgt ggtggatgtc gctgatttac
       61 ttcgcgttcg tcaccggaca atacgggctg acgttctgga tgccgacctt tatcaagtcc
      121 acgggcgtca gcggggcatt caatatcggc ttgctgagcg cgattccgtt tctggtggct
      181 atcgtcgtaa tgaacgtgct gggccatagc gcggataagc ggcgcgagcg ccgctggcat
      241 ctgatcgtgc cggcgcttgc tgccgcggtc ggcttctcgg tggccgcatc gttcgcgggt
      301 agtacggttg tgtcgatcat cgcgctctcc gttgccgccg ccggtgtgct gacgtgcgcg
      361 ccgttgttct ggtctttgcc gacagctttc atgtcgggcg cggcagcggc ggccgggatc
      421 gcggtgatca attcgatcgg caatctggcg ggctttgcga gcccgtacat gattgggtac
      481 ctgaaggacc tgacgcacag cacggcgacg ggcatgtacg tcctcgccgc catgcttgtg
      541 atcggtgcta tcgcgacgtg gctcgtgccc gccaagcttg tgaatcgctg aactcattcc
      601 aggagtcgat gttatgcccc gttttgccgc aaacctcacg atgatgtaca ccgagcacgc
      661 gttcctcgac cgtttcgccg ctgcagcgaa ggacggattc aaggccgtgg agttcctgtt
      721 cccctatgac ttcgccgcag ccgaaatcaa ggcgcggctc gacgaacatg gcctcacgca
      781 ggccttgttc aacgcgccgc ccggcgactg ggcggcgggt gagcgcggga tcgcttcact
      841 gccggggcgc gaggacgagt tcgcgcgtgc actcgataaa gcgctggaat ataccgccgt
      901 gctcggtaac aagacgctgc atgtaatggc gggattgatc acgccggaac agtcgcgtga
      961 gaaacatcgt gcggtgtact tgaagaacct cgaactggcg gcgaacgcag cacgcgcggc
     1021 cggtatcacg gtcgttatcg aaccgatcaa tacccgtgac atccccggct ttttcctcaa
     1081 ccgccaggac gacgcgcaag cgatatgcga agagatcggt gtaccaaatc tcaaggtgca
     1141 attcgattgt tatcactgcc agatcgtgga gggtgatctc gcggtcaagc tccggcgtga
     1201 tatgaaacgc ccgcatgcgg gcattggcca tatccagatc gcgggcgtgc cggagcggca
     1261 tgaaccggac ttgggcgaac tgaattatcc gtacctgttc gacctgatcg attcgcttgg
     1321 ctacgacggc tggatcggct gtgaatacag gccgaaagcc gcgacgtcgg acggcctggg
     1381 ctggatcaaa ccttatctgc aacgtgcgtg agggcaacat gaacattctc attaccggcg
     1441 gcgccgggat tctcggacaa cggctcgcgc gccgtcttct tgaacgcggc aacctgatgg
     1501 gccagccgat caccggactc acgctgctgg acgtcgtgcg tccgccggat ctgggcgaca
     1561 aacgcgtgcg agccgagacc ggcgatattg cggatcgcag cgtgctggaa cggtgcatcg
     1621 gc
//
LOCUS       DATGBK010001781         2390 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_20952, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001781 DATGBK010000000
VERSION     DATGBK010001781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20952"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1005
                     /locus_tag="VKJ77_25125"
     CDS             <1..1005
                     /locus_tag="VKJ77_25125"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014725040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC48625.1"
                     /translation="IAAPTRSQHPFRTKPIECAAVQNGWIRPAHRARRMALAQSRFEQ
                     WKKRGFDVELVDRERAWSLIGSNFWFGGWQNLTGGHINPLAFVRGLARAAQAAGASIH
                     ARSPVTGIARVGDAWRVSTPQARVSAPRVLIATHAYSGALAELGAASPWPKLPNTLIP
                     MRSYQLATQPLPPELRATILPHGHAMSDTHGDLHLARFDETGRLLTGGALIVPFGYES
                     RLRKRLAARLTRMFPQLEGWPLRFDYLWHGNFAVTPDGLPRFATLGNGLFAWMGCNGR
                     GVALSTALGPALTETLFANDPAHSALPFEPMRCIAAHSLVKRTAIAAMMVYRWRDARD
                     "
     gene            complement(1052..2185)
                     /locus_tag="VKJ77_25130"
     CDS             complement(1052..2185)
                     /locus_tag="VKJ77_25130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013590573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HMC48626.1"
                     /translation="MTSFTGSIRRALGLTAARRGRESFDSSAQHDGERFRNVKPRPVE
                     GIRKTLGIAWNILLNKPDGTVPPSPLPVDALTREQLDAAPDRSLFRLGHSTMLLKLRG
                     EFWLTDPVFAERASPFKRFGPKRFHAPPIALADLPPLRGVILSHDHYDHLDRETVLAL
                     ASTTSVFLTPLGVGDRLIEWGIDASKIRQFDWWQGVEIDGLAFTATPSQHFSGRSLFD
                     GNSTLWASWVIVDGDLRVFFSGDTGYFDGFKTIGERLGPFDITLLETGAYDAQWPYVH
                     MQPDETVQAHLDLRGHWLMPIHNGTFDLAMHRWQEPFERVMGLAGAHGIALATPRMGE
                     RLDLAAPHRGQRWWREVAEVVQAPRTPRRWFSCRNASQANSQG"
BASE COUNT          462 a          747 c          743 g          438 t
ORIGIN      
        1 atcgcagccc cgactcgatc acaacacccc ttccgaacaa agccgatcga gtgtgcggcg
       61 gtccagaacg gctggatccg gcccgcgcat cgcgcccgcc ggatggcact cgcgcaaagc
      121 cgctttgagc aatggaaaaa gcgcggcttc gacgtggagc tggtcgatcg cgaacgcgcg
      181 tggagtctta ttggttcaaa cttctggttt ggcggatggc agaacctgac gggtggccat
      241 atcaatccgc tggcgttcgt gcgcggtctg gcgcgcgcgg cgcaagctgc cggtgcgagc
      301 attcatgcgc gctcgccggt gaccggtatc gcgcgcgtgg gggatgcctg gcgtgtcagc
      361 acgccgcaag cccgcgtgag cgcacctcgg gtgctgatcg cgacgcacgc ttatagcggt
      421 gcattagctg agttgggtgc agcgtcgccg tggcccaagc tgccgaacac gctgattccc
      481 atgcgctcct atcaactggc gacccaaccc ctgccgcccg aactgcgcgc gacgatcctg
      541 cctcatggtc acgcgatgtc cgacacgcac ggcgacctgc atcttgcccg cttcgatgaa
      601 accggacggc tgttgaccgg cggtgcgctg atcgttccgt tcggttatga aagccggctg
      661 cgcaaacggc tggcggcgag actcacgcgg atgttcccgc aactcgaagg ctggccgctg
      721 cgcttcgatt atctttggca cggtaacttc gcggtcacgc ccgacggctt gccgcgcttc
      781 gccacactgg gcaacgggct cttcgcatgg atgggctgca acgggcgggg cgtggcttta
      841 tcgacggcgt tggggccggc cctcacagag acactgttcg ccaacgatcc cgctcattca
      901 gctttgccct tcgagccgat gcgttgtatc gccgcgcatt cgctggtcaa gcgaaccgct
      961 atcgcggcga tgatggtgta cagatggcga gacgcgcgcg actgattgaa tatttgcaag
     1021 ggtgagcgtc cgagcgtccc aacgtcaatc gttagccctg cgaatttgcc tggctcgcat
     1081 tacggcaaga gaaccagcgc cgcggcgtcc tgggcgcttg cacgacctcc gccacctcgc
     1141 gccaccaccg ctggccgcgg tgcggcgcgg ccagatccag ccgctctccc atgcgcggcg
     1201 tcgcgagcgc aatgccatgt gcaccggcga gccccatcac gcgctcgaac ggctcttgcc
     1261 agcgatgcat cgccagatcg aacgtgccgt tgtgaattgg cattagccaa tggccgcgca
     1321 ggtcgagatg ggcctgcaca gtttcgtcgg gctgcatgtg tacgtatggc cattgggcgt
     1381 cgtaggcacc cgtttcgagc agcgttatat cgaacgggcc gagccgctcg ccgatcgttt
     1441 tgaagccgtc gaagtagccc gtgtcgccgc tgaagaacac gcgcagatcg ccgtcgacga
     1501 tgacccacga tgcccacaag gtgctgttgc catcgaaaag actgcggccg gagaaatgct
     1561 gggaaggtgt cgccgtgaac gcgagaccgt cgatttctac tccctgccac cagtcgaact
     1621 gacgaatctt cgatgcgtcg ataccccact cgatcagccg gtcgcccaca cccagcggcg
     1681 tcagaaacac gcttgtcgta ctggcgagtg cgagtaccgt ctcgcggtcc agatggtcgt
     1741 agtggtcgtg ggacaggatc acgccacgca gcggcggcaa atcagcgagc gcgatgggcg
     1801 gcgcatgaaa gcgttttgga ccaaaccgct tgaacggtga cgcgcgttcg gcgaagaccg
     1861 ggtccgtcag ccagaactca ccgcgcagct tgagcagcat ggttgaatgc ccgaggcgaa
     1921 acaagctgcg atcaggtgca gcgtcaagct gttcacgcgt cagcgcatcg acgggcaacg
     1981 ggcttggagg cacggtgccg tccggtttat tcaacaaaat attccacgcg atgcccaggg
     2041 tcttgcggat tccttccacg ggacgaggct tgacattacg gaagcgctcg ccgtcgtgct
     2101 gagccgacga gtcgaatgat tcacggccgc gccgcgctgc tgtcagaccc aaagcacggc
     2161 gaatagaacc ggtgaacgat gtcatgtaat ggcgccccaa tatggaaagc aaggaaagta
     2221 gactgtacag tgtagtttat cgtagaaaaa agtaaactgc ctggtgtaaa atttatcgat
     2281 gaatgctacc gccaacctca ccgccaacct caccgccaac gcgccacgcc tgaccgatcg
     2341 caaacgcgct gccgtgatcg ctgcggctat cgaggaattt ctcgcagcgg
//
LOCUS       DATGBK010001782         1586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_183091, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001782 DATGBK010000000
VERSION     DATGBK010001782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183091"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="VKJ77_25135"
     CDS             complement(<1..737)
                     /locus_tag="VKJ77_25135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018424594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HMC48627.1"
                     /translation="MPAHEDAAVNAVALPTLEIAAPDLAALYRDSGIDEVFAQLDAEL
                     VGLAPVKSRIREIAALLLVDKARRGLGLSAGPPSLHMSFTGNPGTGKTTVAMRMAEIL
                     HRLGYIRRNHVIAVTRDDLVGQYIGHTAPKTKDVLKRAMGGVLFIDEAYYLYRPENER
                     DYGQEVIEILLQVMENQRDDLVVILAGYKPRMETFFRSNPGMASRVAHHLDFPDYSVD
                     ELMQIAQLLAANIDYRFDAAGLAALRE"
     gene            complement(750..1184)
                     /locus_tag="VKJ77_25140"
     CDS             complement(750..1184)
                     /locus_tag="VKJ77_25140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009858945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose bisphosphate carboxylase small subunit"
                     /protein_id="HMC48628.1"
                     /translation="MMTNPGNRITQGQFSFLPELSDLQITAQINYALKNGWAVSVEYT
                     DDPHPRNTYWEMYGNPMFDLNDAAGILMEINACRKTFPHHYIRVFAFNSARGVESPAM
                     CFIVNRPQNEPGFCLIRQEVAGRQLRYTVASYAAVKPEGERY"
     gene            complement(1206..>1586)
                     /locus_tag="VKJ77_25145"
     CDS             complement(1206..>1586)
                     /locus_tag="VKJ77_25145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016354232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016984 - ribulose-bisphosphate
                     carboxylase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RuBisCO large subunit C-terminal-like
                     domain-containing protein"
                     /protein_id="HMC48629.1"
                     /translation="HGLFFDQEWAGTRKVMPVASGGIHAGQMHQLIDYLGEDCVLQFG
                     GGTIGHPMGIQAGATANRVALEAMILARNEGRDYFREGPQILEQAAKSCKPLQAALDT
                     WKDISFNYESTDTADFVPTATASA"
BASE COUNT          297 a          470 c          494 g          325 t
ORIGIN      
        1 tactcgcgca gcgccgcaag gcctgccgcg tcgaagcggt agtcgatgtt tgcggcgagc
       61 agttgcgcga tctgcatcag ctcgtctacg ctgtaatcgg gaaaatccag atgatgcgcg
      121 acacgcgacg ccatgccggg attgctgcgg aaaaaggtct ccatgcgcgg cttgtagccg
      181 gccaggatga cgacgaggtc atcgcgctgg ttttccatca cctgcagcag aatctcgatg
      241 acttcctgcc cgtagtcgcg ctcgttctcg ggccgataca ggtaataagc ctcgtcgatg
      301 aaaagcacac cgcccatcgc gcgtttgagc acgtccttgg ttttcggcgc ggtatgaccg
      361 atgtattgac cgacgaggtc atcgcgcgtg accgcgatca catggttgcg acggatgtaa
      421 ccaagccggt gcaggatctc ggccatgcgc atcgccacgg tggtcttgcc cgtgcccggg
      481 ttgccggtaa agctcatgtg caggcttggc gggcccgcgc tcaagcccag gccgcggcgc
      541 gccttgtcga cgagcagcag cgcggcgatc tcgcggatgc gcgacttcac cggagcgagc
      601 ccgacgagtt cggcatcgag ctgagcgaat acttcatcga taccgctgtc ccggtataaa
      661 gcggctaggt ccggcgcagc gatttctagc gtcgggagag ccacggcgtt caccgccgca
      721 tcctcgtgcg caggcatgtc ggcacagcgt taatagcgtt cgccttcggg tttgaccgcg
      781 gcatagctcg cgaccgtgta gcgcagctgc cgtccggcga cttcctggcg aatcaggcag
      841 aagcctggtt cgttctgcgg ccgattgacg ataaagcaca tcgccggact ctcgacgccg
      901 cgcgcggaat tgaacgcgaa cacgcgaatg taatggtgcg gaaaggtttt gcggcaggca
      961 ttgatctcca tgaggatgcc ggcagcatcg tttagatcga acatcggatt gccgtacatt
     1021 tcccagtaag tgttgcgcgg atgcggatcg tcggtgtact cgacgctgac cgcccagcca
     1081 ttcttcaacg catagttgat ctgcgccgtg atctgcaggt cgctgagttc gggcaggaaa
     1141 gaaaactggc cctgggtgat gcgattgccg ggattggtca tcatggctgc gattcctaac
     1201 gtgtctcagg cactcgccgt ggcggtggga acgaagtcgg cagtgtcggt cgactcatag
     1261 ttgaagctga tgtctttcca ggtatcgagc gcggcctgca gcggcttgca tgatttggcc
     1321 gcctgttcaa ggatctgcgg accttcgcgg aaatagtcac ggccttcgtt gcgcgccagg
     1381 atcatcgctt ccagcgcgac tcgattggcg gtcgctccgg cctggatgcc catcggatgg
     1441 ccgatcgtgc cgccgccgaa ctgcagcacg cagtcctcgc ccaaataatc aataagctga
     1501 tgcatttggc ccgcatggat gccgccggat gcaaccggca tgactttgcg cgttcccgcc
     1561 cactcctgat caaaaaacag gccatg
//
LOCUS       DATGBK010001783         2070 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_230001, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001783 DATGBK010000000
VERSION     DATGBK010001783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230001"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(638..1945)
                     /locus_tag="VKJ77_25150"
                     /pseudo
     CDS             complement(638..1945)
                     /locus_tag="VKJ77_25150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013697521.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT          456 a          598 c          630 g          386 t
ORIGIN      
        1 caccgtgacg tgttcgtatt gcatcgtcgt accgagcacg cggctcactt cggccgccag
       61 ctcctcgtgg ctgtactcca cgggaccatg cagcgcatag atgttgccgg aatgagctgc
      121 cgcgtcatat ctcgactaac acgatcgcag gtgcgatcgc gtgcgcgacg ggcggtcttg
      181 gaatcacctc ggcacccctt tggggttgcc aggaggaact ggatcgcgga tcgcttgtgc
      241 atattctcgc tgactggaat acaacaggtc ttccggtgca cgcctatttt ccactggggc
      301 gctctgcgcg gaaagtggcg cgagcattcg ttgaatttat cactgaggaa cttcgaaagc
      361 agtagtcgag tggactcatc cttgaaagct ttcggtttca tctaggggtt gcttagctct
      421 ggacaggttg cccggccaac atgacgaaat ggctcgctag taagtgaagc aagagtgcag
      481 tggttcttcc cattccagta attttgctat gctgatcaat taaaaaacac atacgtgtac
      541 cgccctgcgg cgtcgaacgt tttgttgacg cgcgcgaaca atccgcgggc acgaagcgcg
      601 cgttcgatgc cgagcaattg ggtgaaggaa agaggcctta cgcctgacgc gtttcgcgcg
      661 tgaacatcaa cgtcacgacc gtgatcaggc cgagcacgat caagaagatg gagaccggcc
      721 agtacgcgtg ataacgagcg agcagggcag ttgcgatcaa cggcgagaga ccacccgcaa
      781 agatcgacgc gacttcatgg ccaagtgcga cgccggaata gcgcacctcc gtactgaaga
      841 gttcgctgac gagcgcaggc aaggtgccga tcattgcgcc atgacagacg gcggtgccca
      901 gcacgagcgc cagccagatg aacggtgtcg agtgtgtgtc gagcaaccag aagaacggga
      961 acgccatcgc gacgagcgac aacgcgccga tcatatacac cggcttgcgg ccgatacggt
     1021 ccgatagttt tccccacgcg agcatcgcca tcatttcgac gatcatcgcg agcatcacgc
     1081 caatgagcat ggtcgagctt gcgatgcccg caaatctgcc gtagacgagg gagaacgcga
     1141 ggaagatata ggcgccgccg ttttccgcga cgcgcaggcc cattgccatc aggatttctt
     1201 tcggatgtcg cttgattgct tcgagcaccg gcatgtgcga agtctttccc gctttctcgg
     1261 cgttttcaaa gtcgcggctc tcgggaaggt tatgccgaat gtagacgccc agcgcgaaga
     1321 tcagaatgct ggcgagaaat ggcaatcgcc atccccacga gatgaattga tcgtgcggca
     1381 gcgcctacac cgccaggaac gcggcggaag agagcacgaa cccgccgccc acgcccagtt
     1441 ggctccacgc tgcgtaatag ccgcgttttt cgggcggcgc gttttcgctg atcatcagca
     1501 ccccgccgcc ccattctccg cccgatgcaa taccttgcaa cagcctcagt gcgacaagcg
     1561 cagcgggcgc ccataggccg acgtgatcgt aggtcggcaa caggccgatg ccgaaggtcg
     1621 caaagcccat gatgagcagc gtccatacga gcgacgcgcg ccgtccgtaa cgatcgccga
     1681 tatgaccgaa cacgatgccg ccaaggggcc gcgcgacgaa gcccatcgca aatgccgcca
     1741 atgcgccgag cgtgccgatg agcgggtccg cgtttggggg gaagaacaat tgtccgaaca
     1801 ccagcgccgc tgccgtgcca tagacgaaga agtcgtacca ctccatcgca ttgccggcca
     1861 cggaggcgat gacgatcttt ctgagttcgc ggtcgggcac cgccgtgatc ggctttgcag
     1921 cggccgggga ttgaacggaa gccatgtgtg ctcgcattga aagagggggt gaaagggcgg
     1981 cctttcaaaa ggcttcgcat ggcaggcagt gtcgaggcga cggataccgg cgtcaaattg
     2041 gctgaaaacg agtggcggta tcagtcctgt
//
LOCUS       DATGBK010001784         1718 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_183115, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001784 DATGBK010000000
VERSION     DATGBK010001784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183115"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="VKJ77_25155"
     CDS             <1..246
                     /locus_tag="VKJ77_25155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HMC48630.1"
                     /translation="AVVIVSDGYDAGEPDSLQQALATIRRRCRRVVWLNPLADRADFT
                     PSSVGMQAAMPYIDLLAGARDLASLERVLPQVLSTLQ"
     gene            243..1328
                     /locus_tag="VKJ77_25160"
     CDS             243..1328
                     /locus_tag="VKJ77_25160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011493222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HMC48631.1"
                     /translation="MSADIDTLLQLEQRLIEAAQPFAVVTVIRAGPPTSAWVGAQALV
                     DGEGVLHGWIGGGCSRTIVIQAALQAIRSGSPKRVRISNEAAMSDADVELHTMPCASN
                     GTLELFIQPTLPAPLVLVLGSTPTALEACVLAQRVGLRVCAAANVSTPLVALGLDHVI
                     QGFNVDALSQVKPQMILVATQGDCDEDALEAALRTSAAAVLLVASERKAEKLRDAMHL
                     RGIAPERLKALHAPAGPHIHAHTPLEIALGAVAGLVTLRRELERAAADACAPSIAGAG
                     TGVGTCDDAVPRVPPCESMASVEPTVARYINPVCGMPVDIALAKYVVDHGGQRVYFCC
                     DGCKIEFEHSPDKYLAIAQGRREREKT"
     gene            1325..>1718
                     /locus_tag="VKJ77_25165"
     CDS             1325..>1718
                     /locus_tag="VKJ77_25165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HMC48632.1"
                     /translation="MNDAHDTAAPTFSAVVLAAGLSSRMEGPHKLLLPVDGQPAVRRS
                     VSALAAAGPEEIVVVTGFKGRAVIEALDGLAFTFQCNPRYEQGQMTSVAAGVAALRAP
                     CSIVLVCLADQVVLEAADYREVVNAFAAM"
BASE COUNT          284 a          518 c          588 g          328 t
ORIGIN      
        1 gctgtcgtga ttgtcagcga cggctacgat gccggagaac cggatagcct gcagcaggcg
       61 ctcgccacga tccggcggcg ctgccgccgt gtggtctggc tcaatccgct cgcggaccgg
      121 gccgacttca caccgtccag cgtcggcatg caggcagcga tgccttatat cgatctgctg
      181 gcaggcgcac gtgatctggc gagtctcgag cgtgtgctgc cccaagtgct gtccacactg
      241 caatgagcgc cgatatcgat accctcctgc aactcgagca acggctgatt gaagcagcac
      301 agccgtttgc ggtggtcacc gtgatcaggg ccggcccccc tacgtccgcg tgggtcggcg
      361 cgcaggcgct ggtcgacggc gagggcgtgc tgcacggctg gattggcggc ggttgttcgc
      421 gaaccatcgt gatccaggct gcgctgcaag ccattcgttc gggaagtccc aagcgcgttc
      481 gcatcagcaa cgaagcggcc atgtccgatg ccgacgttga actgcacacc atgccttgcg
      541 cgagcaacgg cacgctcgaa cttttcattc agccgacgct gcccgcgccg ttggtactcg
      601 tgctgggctc gacgccgaca gcgctcgaag cgtgcgtgct ggcgcaacgc gtggggctgc
      661 gcgtttgtgc tgcggcgaat gtgagcacgc cgcttgttgc gcttgggctt gaccacgtca
      721 ttcaaggttt caacgtcgat gcattaagtc aggtcaagcc gcaaatgatt ctggtcgcga
      781 cgcaaggcga ttgcgacgag gacgcgctcg aggctgcctt gcgtacatcg gcggcggccg
      841 tgttgctggt ggcaagcgag cgcaaggcgg agaaattgcg cgacgccatg cacttgcgcg
      901 gcatcgcgcc ggagcgcctc aaggcattgc atgcgcccgc tggcccgcat attcatgccc
      961 atacgccgct ggagatcgcg ctgggcgccg tcgcggggct ggtgacgttg cgccgcgaac
     1021 tcgaacgagc cgcagcggac gcctgcgcac cgagtattgc cggagccggc accggcgtag
     1081 gcacctgcga cgacgccgtg ccgagagtgc cgccatgcga gtcgatggca tcggtggaac
     1141 ccacggtcgc ccgctatatc aatccggtgt gcggcatgcc tgttgatatc gcgttggcga
     1201 agtatgttgt cgaccacggc gggcagcgtg tctatttttg ctgcgatgga tgcaagatcg
     1261 agttcgaaca ttcgcccgat aaatatcttg cgattgcgca gggcaggcgg gaacgggaga
     1321 agacatgaac gatgctcatg acacggctgc gccgacgttt tcggccgtcg ttctggctgc
     1381 gggtttgtca tcgaggatgg agggcccgca caagttgctg cttcccgtcg atgggcagcc
     1441 ggcagtcagg cgctctgtga gcgctctggc tgctgcgggc cccgaagaga tcgtggtggt
     1501 gaccggcttc aaggggcggg ccgtgataga ggcgctggac ggcttggcat tcacctttca
     1561 gtgcaacccg cgctatgagc aaggccagat gacgtcggtc gccgcgggcg ttgccgcact
     1621 ccgcgcgccg tgcagcatcg tgctggtgtg ccttgccgat caggtggtgc tggaagccgc
     1681 tgactatcgg gaagtggtga acgctttcgc cgctatgc
//
LOCUS       DATGBK010001785         1833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_136935, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001785 DATGBK010000000
VERSION     DATGBK010001785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136935"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VKJ77_25170"
     CDS             <1..466
                     /locus_tag="VKJ77_25170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018432504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EscU/YscU/HrcU family type III secretion system
                     export apparatus switch protein"
                     /protein_id="HMC48633.1"
                     /translation="AVPTADVIVTNPTHFAVALKYADGEMRAPKVVAKGVNLVAARIR
                     EMAIEHNVPLLEAPPLARALYHNVEIDREIPGALYGAVAQVLAWVYQLRKFKKDGGSR
                     PDEPENLEVPPELDKGSVPESEADQEAAEALATDNADSAGNDGNDPMKGSKA"
     gene            463..>1833
                     /locus_tag="VKJ77_25175"
     CDS             463..>1833
                     /locus_tag="VKJ77_25175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018418777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA];
                     GO_process: GO:0071978 - bacterial-type
                     flagellum-dependent swarming motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HMC48634.1"
                     /translation="MNARAGFFSKRPDALGSQNLRALAGPVLICMILGMMILPLPAFL
                     LDLLFTFNIALSVMVLLVSMYTQKPLDFAAFPSVLLFSTLLRLSLNVASTRIVLLEGH
                     TGPDAAGQVIESFGHFLVGGNFAVGIVVFVILMIINFMVITKGAGRIAEVGARFTLDA
                     MPGKQMAIDADLNAGLINEDQARKRRLQVAQEAEFYGSMDGASKFVRGDAIAGLMIMI
                     INIVGGLIVGMLQHDMDFAHAATNYTLLTIGDGLVAQIPSLIISTAAGVIVSRVATEE
                     DIGTQLTGQLFNNPRVLMITGVIIGIMGLIPGMPHFAFLLLGGGLVYAARSMNQRIAA
                     KKKASLVTDVVPAAAAPLENTEASWDDVAMIDPLGLEVGYRLIPLVDRNADGELLKRI
                     KGIRKKFAQEIGFLPPVIHIRDNLELRPNGYRIALKGVEVGVGEAFPGQWLAINPGQV
                     SATLPGN"
BASE COUNT          354 a          536 c          586 g          357 t
ORIGIN      
        1 cgcggtgccg accgccgacg tgatcgtcac caacccgacc cacttcgccg tcgcgctgaa
       61 atatgccgat ggcgaaatgc gcgcgcctaa ggtcgtcgcg aagggcgtga acctggtggc
      121 cgcgcgtatt cgcgaaatgg cgatcgaaca taacgtgccg ctgctcgaag caccgccgct
      181 tgctcgcgcg ctgtatcaca acgtcgagat cgatcgcgag attccaggcg cgctgtacgg
      241 cgccgtcgcg caggtgctgg cgtgggtgta ccagttgcgc aagttcaaga aagatggcgg
      301 tagccgaccg gacgaacccg agaatctcga ggttcctccc gaactcgata aaggcagcgt
      361 ccccgaatca gaagccgacc aggaagccgc cgaagcactg gctactgaca atgcagactc
      421 agccggcaat gatggaaatg acccgatgaa aggaagcaaa gcatgaacgc gcgcgccgga
      481 tttttctcga agcgccctga cgcactggga tcgcagaact tgcgggccct cgccgggccg
      541 gtgctgatct gcatgatcct cggcatgatg atcttgccgt tgccggcctt tttgctcgac
      601 ttgctgttca cgttcaacat cgcgctgtcc gtgatggtgc tgctggtcag catgtacacg
      661 cagaagccgc tcgacttcgc cgcgttcccg agcgtgctgc tgttctccac gctactgcgt
      721 ttgtcgctga acgtggcgtc cacgcggatc gtcctgctcg agggccacac cggtcccgac
      781 gccgccggcc aggtgatcga atcgttcggc cacttcctgg tgggcgggaa tttcgcggtc
      841 ggtattgtgg tgttcgtgat cctgatgatc atcaacttca tggtgatcac aaagggcgcg
      901 ggccggattg ccgaagtggg cgcgcgcttc accctcgacg ccatgccggg caagcagatg
      961 gctatcgatg ccgacttgaa cgccggcctc atcaacgaag accaggcgcg caagcgccgc
     1021 ttgcaggtcg cgcaggaagc cgagttctac ggctccatgg acggtgcaag caagttcgtg
     1081 cgcggcgacg cgatcgcggg cttgatgatc atgatcatca acatcgtggg cggcttgatt
     1141 gtcgggatgc ttcagcacga catggacttc gcgcacgcgg ccacgaacta cacgctgctg
     1201 actatcggcg atggcctcgt cgcgcagatc ccctcgctga tcatttcgac ggcggccggt
     1261 gtgatcgtgt cgcgggtggc gaccgaagag gatatcggca cgcagttgac ggggcagctc
     1321 ttcaacaacc cgcgcgtgtt gatgattacc ggtgtgatca tcggcatcat gggattgatt
     1381 cccggcatgc cgcatttcgc gttcttgctg ctggggggcg gactggtgta cgccgcgcgt
     1441 tcgatgaacc agcgcatcgc ggcgaagaag aaagcgtccc tcgtgacgga tgttgtgcct
     1501 gccgccgctg caccgctcga aaataccgaa gcgagctggg acgacgtcgc gatgatcgat
     1561 ccgctcgggc tcgaagtggg gtatcggctg ataccgctag tcgaccggaa cgcggacggc
     1621 gagctgttaa aacggatcaa gggtattcgc aagaaattcg cgcaggaaat cggcttcctg
     1681 ccgcctgtga ttcatattcg cgacaacctg gaactgcgtc cgaacggtta tcggattgcg
     1741 ctgaagggtg tggaagtggg cgtaggcgaa gcattcccag gtcaatggct tgcgatcaac
     1801 ccgggtcagg tgtcagcaac gttgccgggg aat
//
LOCUS       DATGBK010001786         1885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_21004, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001786 DATGBK010000000
VERSION     DATGBK010001786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21004"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..672)
                     /locus_tag="VKJ77_25180"
     CDS             complement(<1..672)
                     /locus_tag="VKJ77_25180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HMC48635.1"
                     /translation="MTQMALVIDLNVCVGCHACVTSCKEWNTSGESGSLADLNPYDAD
                     PSGTFFNRVQSFEAGTYPNAETIHFPKSCLHCEDPPCVPVCPTGASYKRKEDGLVLVD
                     FDKCIGCKYCAWACPYGARELDEERKEMTKCTLCVDRIHDENLSERDRQPACVLACPT
                     SARLFGDIHDPESVVSKAIKERGGYQLMPEWDTKPANHYLPRKMTSASGCGEGSCSCK
                     TASAES"
     gene            complement(700..>1885)
                     /locus_tag="VKJ77_25185"
     CDS             complement(700..>1885)
                     /locus_tag="VKJ77_25185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011853975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin oxidoreductase family protein"
                     /protein_id="HMC48636.1"
                     /translation="MSMLDRPISEFDGPADSVRVPVVPPSGQCKPFQEVLIELASRLK
                     FPAFTTAEGARRYRDYPDFVVNFTTTPNSGVGFLIGWRGKDGDKALVGEPNPKQWEQY
                     AKNNCVFHHVMPEHLQYMRNCNGEYLDWAVKNGFRKFREPIVIQLYSDVMQKFRLAAQ
                     GRTKGRRPPDHLRARVEKYFDPLPFWYAPLESNSTDLERFPLAAVTQRPMAMYHSWDS
                     QNAWLRQIHGENYLYMNPLMAAENGIADGGWIYVESQWGRVRCMARFSETVEPGTVWT
                     WNAIGKASGAWNLGANASESRRGFLLNHLITDELPGTDKADEAAGRLSNSDPITGQAA
                     WYDVRVRIYPAEADAQHTLPQFDPMRSLPGSNGVISRIVQTYFAGQGEFAARLRGAVG
                     RK"
BASE COUNT          365 a          618 c          524 g          378 t
ORIGIN      
        1 ggactcagcg gaagccgtct tgcacgaaca actgccttcc ccgcaacccg aagccgacgt
       61 catcttgcgc ggcaaatagt gattcgcagg cttcgtgtcc cattcgggca tcaactgata
      121 acccccgcgc tccttgatcg ccttcgacac cacggattcg gggtcgtgaa tgtccccgaa
      181 caatcgtgcg gaggtcggac acgcgagcac gcatgccggt tgtcgatctc gctcggagag
      241 gttttcgtca tggatacgat ccacgcacaa cgtgcacttc gtcatctcct tgcgctcttc
      301 gtccagttcg cgtgcgccgt acggacacgc ccacgcgcag tacttgcagc caatgcattt
      361 atcgaagtcc accagcacga gtccgtcttc cttgcgttta tagctcgcac cggttggaca
      421 cacgggcacg cacggcgggt cctcgcagtg caggcacgac ttcgggaaat ggatggtctc
      481 ggcgttcgga tacgtgcccg cctcaaagct ctggacgcga ttgaagaacg taccggacgg
      541 atcggcgtcg tagggattca ggtcggcaag gctgcccgac tcgcccgatg tattccactc
      601 cttgcaactc gtcacgcaag cgtggcatcc cacgcacacg ttcaggtcga tcaccagcgc
      661 catctgagtc attggatgtc cccttgcttc ttagagtcac tacttgcgcc ctaccgcacc
      721 gcgcagccgt gccgcaaatt cgccttgccc cgcgaagtag gtctgcacga tccgcgaaat
      781 cacgccgttc gaacccggca gcgaacgcat ggggtcgaac tgcggcagcg tgtgctgcgc
      841 gtcagcctcc gccggataga tccgcacgcg cacgtcgtac cacgcagcct gccctgttat
      901 tgggtccgag ttcgagagac gcccggcggc ttcgtctgct ttgtccgtgc cgggcagttc
      961 gtcggtgatc aggtgattga gcaggaaacc acgtcgcgac tcgctcgcgt tcgcgccgag
     1021 gttccatgca cccgacgcct tgccgatcgc attccaggtc cataccgtcc ccggctcaac
     1081 cgtttcactg aagcgagcca tgcagcgcac gcggccccac tgcgactcaa cgtaaatcca
     1141 gccgccgtcc gcaatgccgt tctcagccgc catcaacgga ttcatgtaga gataattctc
     1201 gccatggatc tgacgcagcc atgcattctg cgagtcccat gagtgataca tcgccatcgg
     1261 ccgctgcgtc actgcggcca gcgggaagcg ctcaagatcg gtcgagttgc tttcaagcgg
     1321 tgcgtaccag aacggcagcg gatcgaagta tttttcgaca cgcgcgcgca agtgatcagg
     1381 aggccgcctg cctttcgttc gcccttgcgc cgcgagccga aacttctgca tgacatcgga
     1441 ataaagctgg atgacgatgg gctcgcgaaa cttgcgaaaa ccgtttttca cggcccagtc
     1501 cagatactct ccgttgcaat tgcgcatgta ctgcaggtgt tccggcatca cgtgatggaa
     1561 cacgcagttg ttcttcgcgt actgctccca ctgcttcgga ttgggctcgc cgaccagcgc
     1621 cttatccccg tccttaccac gccatccgat caggaaaccc accccggaat tgggcgtcgt
     1681 cgtgaaattg accacgaagt caggataatc acgatagcgc cgcgcgcctt cggccgtggt
     1741 gaatgccgga aacttcagcc gcgacgccag ttcgatcagc acttcctgga acggcttgca
     1801 ctgccccgaa ggcggcacga ccggcacgcg tacggaatcg gccggaccgt cgaattcgga
     1861 gatcgggcga tcgagcatcg acatc
//
LOCUS       DATGBK010001787         2295 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_252621, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001787 DATGBK010000000
VERSION     DATGBK010001787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252621"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..1577
                     /locus_tag="VKJ77_25190"
     CDS             156..1577
                     /locus_tag="VKJ77_25190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC48637.1"
                     /translation="MHDQPSPERSPSQHVVNALREALGADVVSLPHEFAGRKNSDSSR
                     MPCEEPLALIRPRNTEHVATALRICHEHRQPVVTQGGLTGLAGGATFLGGEVALSLEL
                     MNGIEGIDSVSASMTVLSGTPLQIVQEAADAAGFMFPLDLGARGSCTIGGNLATNAGG
                     NRVIKYGMMRDQVLDMEAVLADGSIVGGLRKMIKNNTGYDLRNLLIGSEGTLAVITRA
                     VLRLRPKPRAVSTAWCGLPNYDAVTTLLRRAQESLPAGVSAFEVMWPGYYDFVLSRLP
                     ELRAPLEGKHAFYVLLESSGADPERQADAFEDFLSGMLEAGLISDAALASSESDAAAF
                     WAIRDAPGEYQRLIPGRVSFDVSFSIADVGVAAHRCEQQLRKHWPNATILIYGHLGDG
                     NLHIVVQEPDWPRDTAPKVQAVVYGVTGEMGGSVSAEHGIGTKKLKVLALSRTPAELA
                     AMRAIKAALDPLNILNPGKLLPH"
     gene            1632..>2295
                     /locus_tag="VKJ77_25195"
     CDS             1632..>2295
                     /locus_tag="VKJ77_25195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC48638.1"
                     /translation="MTRFVKQVMCGVALAVAGVVATAPAFAADKMKVGISMKVLNAPY
                     FSAAMESAKARATENGADVITADAQGKMGKQISDVEDMLTRGIKVLIIDPADPKGLVN
                     AVNTATAAGVKVVVIDSTLDPKANYLTLVQSSNRENGALVGSWVVDTMGDKPLKIALI
                     SGEKGNPVGKERRDGVMEGIIEAQLAKTGKVNMQIVGQGWGNWSDEGGLKAMEDLLVA
                     NKD"
BASE COUNT          484 a          667 c          725 g          419 t
ORIGIN      
        1 caagccctgt ttttatgctt aatgatagct atactatcgt tcatgatatg cagacacaac
       61 gttatcccca ctaacgttgt gtcaaacgca aattcgcaaa ccaggcaaga cggcacgtca
      121 atagcgccgc acgccaaccc cgccggagag atttgatgca cgaccaacca tcccctgagc
      181 gcagcccttc ccagcacgtt gtgaacgcgc tgcgcgaggc gctcggagcc gatgtagtca
      241 gcctgccgca cgagttcgcc ggaaggaaga attcggactc gagccgcatg ccgtgcgagg
      301 agccgcttgc gctgatccgg ccgcgcaata cggaacacgt tgccactgcg ctgcggatct
      361 gccatgagca ccggcaaccg gtggtcacgc aaggcggctt gacggggctc gcagggggcg
      421 cgacgttcct cggcggagaa gtggcgttga gcctggaact gatgaacggc attgaaggta
      481 tcgactccgt cagcgcgtcc atgacggtgc tgtccggcac gccgttgcag atcgtccagg
      541 aagcggcgga cgctgccggc ttcatgtttc cactcgatct cggtgcgcgc ggaagctgca
      601 cgatcggtgg caatctcgcg accaacgcgg gcggcaatcg cgtgatcaag tacgggatga
      661 tgcgcgacca ggtactcgat atggaagccg tgctggccga tggcagcatc gttggcggcc
      721 tgcgcaagat gatcaagaac aacacggggt atgacctgcg caacctgttg atcggcagtg
      781 aaggaacgct ggccgtcatc acgcgtgccg tgctgcgctt gcggccgaaa ccccgcgcgg
      841 tatccacggc atggtgcggc ctgccgaact acgacgccgt gaccacgttg ttgcgacgcg
      901 cgcaagaaag cttgccggcc ggtgtatccg cgttcgaagt gatgtggccg ggttattacg
      961 atttcgtgct gtcgcgcttg cccgaattac gcgcgccgct tgaaggaaaa catgcgttct
     1021 acgtgctgct ggaaagcagc ggtgccgacc ccgaacgtca ggccgacgcc ttcgaagact
     1081 tcctctccgg catgctcgaa gcaggactga tcagcgatgc cgcgctcgct tcatcggagt
     1141 cggatgccgc cgcgttctgg gccattcgcg acgcgcccgg tgagtatcaa cggctgattc
     1201 ccggccgcgt ttccttcgat gtcagcttct cgatcgccga cgtaggcgtt gccgctcacc
     1261 gatgcgaaca gcagcttcgc aaacactggc ccaacgcgac catcctgatc tatggacatc
     1321 tcggcgacgg caatctgcat atcgtcgttc aggaacccga ctggccgcgc gacacagcgc
     1381 ccaaggtcca ggccgtggtg tacggcgtga cgggagagat gggcggctcg gtatcggcgg
     1441 aacacggcat tggcacgaag aaactgaagg tgctggcgtt gtcgcgcacg cctgctgagc
     1501 tcgccgccat gcgcgcgatc aaggccgcac tcgatccatt gaacatcctc aatcccggaa
     1561 agttgttgcc gcactgattc aagagttttt atgtttttta aaaccgccaa accccaacaa
     1621 aaggaggaga catgacgcgg ttcgtgaagc aggtgatgtg tggtgtagcg ctggcggttg
     1681 caggcgtagt ggcaacggcc ccggcgtttg ctgccgacaa gatgaaagtg ggcatttcca
     1741 tgaaggtgct caacgcacct tacttctcgg ctgccatgga gtcagccaag gcacgtgcta
     1801 cagaaaacgg cgccgacgtg atcacggccg acgcccaggg caagatgggc aagcagatct
     1861 cggacgtgga agacatgttg acgcggggta tcaaggtgct gatcatcgac ccggccgatc
     1921 ccaaaggtct cgtcaacgcg gtgaatacag ccactgccgc cggcgtgaaa gtggtcgtga
     1981 tcgacagtac gctcgacccc aaggctaact acctgacgct cgtgcaatcg tcgaatcgcg
     2041 agaacggtgc gctggtcggc tcgtgggtcg tcgacaccat gggtgacaag ccgctgaaga
     2101 tcgcgctgat ctccggcgag aaaggcaatc cggtcggcaa ggaacggcgc gatggcgtga
     2161 tggaagggat tatcgaagcg cagctcgcca agaccggcaa ggtcaacatg cagatcgtcg
     2221 gtcagggctg gggcaactgg tcggatgaag gcgggttgaa ggccatggaa gatttgctgg
     2281 ttgccaacaa ggaca
//
LOCUS       DATGBK010001788         1562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_321909, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001788 DATGBK010000000
VERSION     DATGBK010001788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321909"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..251
                     /locus_tag="VKJ77_25200"
     CDS             <1..251
                     /locus_tag="VKJ77_25200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HMC48639.1"
                     /translation="PCKFNLIPFNPFPESGLTRSSNEQIKRFAQVLMDAGVVTTVRKT
                     RGDDIDAACGQLAGAVQDRTRLAQRMGKPAKVIEVRAV"
     gene            466..>1562
                     /locus_tag="VKJ77_25205"
     CDS             466..>1562
                     /locus_tag="VKJ77_25205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RodZ domain-containing protein"
                     /protein_id="HMC48640.1"
                     /translation="MSEPQHPTPFGAHKAGQSGSQSGALPGSQPENPASVANTAPGGI
                     QQAASLDSVAAVGARLTQLREAKNWSLDDVSARLKVSPQKLRALESGDLSLFPDRNFA
                     TGIVRSYAKIMGADPAPFTAALRHANGPVEQNLSLPASSGAGLPRGRVSVPLGSSPRR
                     RSWLWGVAAVIVAVIALAMWHTGGDSAAWFARLKASANGATQATNSETSASSSVMATD
                     EATANTGSVASGDAAEAPANGSGVQAGTQAGAQPMPSPLGTNALPASSSTITAVQGAA
                     ARAQGASAPVTAPLANAAKPAPSTDAAGTASATASVGSGANELELKVAKDSWFSVRQK
                     DGKEVFSGLVKADSVQRVAGDAPFKITVGNRA"
BASE COUNT          304 a          462 c          523 g          273 t
ORIGIN      
        1 tgccgtgcaa attcaacctg atcccgttca atccgttccc cgagtccggt ctgacgcgct
       61 cgagcaacga gcagatcaag cgattcgcgc aggtgctgat ggacgcaggc gtcgtgacaa
      121 ccgtgcgcaa gacgcgcggc gacgacatcg acgctgcatg cggtcaactg gccggcgcgg
      181 ttcaggatcg tactcggctg gcgcagcgta tgggcaagcc cgcgaaggtc atcgaggttc
      241 gcgctgtctg agctccgggc gagatggccg tgctgccgac ctccggcgcc ccatttggcg
      301 caaaaaccgg aaaatccggc aataaatgct agaaggcggc acacaatgcc gtgcattttg
      361 ttataaagcc gtctgcaacg ccgactcggc tgtgtcgtgc ggtggcgcta aggtcagcaa
      421 cgaagctgaa cagcgacaaa aaagaatcaa tgcgaggaat ttgggatgag tgagccgcag
      481 cacccgacgc ctttcggcgc tcataaagct ggccaatcag gcagtcagtc cggtgctttg
      541 cccggaagtc agcccgagaa ccccgcgagc gtcgccaaca ccgcgccggg cggcattcag
      601 caggcagcga gtcttgattc ggtcgccgca gtgggtgcgc gacttacgca gcttcgcgaa
      661 gcgaagaact ggtctctcga cgacgtgtcc gcgcggctga aggtatcgcc gcagaaactg
      721 cgtgcgctcg agagcggcga tctgagcctt ttccccgacc gaaatttcgc gacgggcatt
      781 gtgcgcagct acgcgaaaat catgggcgcc gatccggctc ccttcacggc cgcgctgcgt
      841 cacgcgaatg gtccggtcga gcagaatttg tcgttgccgg catcgtccgg tgcgggtttg
      901 ccgcgcggtc gcgtatcggt cccgctgggc agttcgccgc gccgccggtc ttggttgtgg
      961 ggcgttgctg ctgtgatcgt tgccgtgatt gcgctcgcaa tgtggcacac gggcggggat
     1021 tccgccgcgt ggtttgcccg gctgaaggcc agcgctaatg gcgcaaccca ggcaacgaac
     1081 agcgaaacca gtgcgagttc gtcggtgatg gctaccgatg aagcaacggc caacacgggg
     1141 tcggtcgcat cgggtgatgc cgctgaagcg ccggcgaatg gatctggggt tcaggctgga
     1201 acgcaggcag gcgcccagcc tatgccgagc ccgctaggta cgaatgcgct tcccgcgtct
     1261 tcatccacta ttacggccgt tcagggggcc gccgcgcgtg cacaaggcgc gagcgctccg
     1321 gttacggcgc cgttggcgaa tgcagcgaaa cccgcgcctt cgacagatgc ggctggtacg
     1381 gcgtcagcga ctgcatcagt gggtagcggc gccaacgaac tcgaattgaa ggtggcaaaa
     1441 gacagctggt tcagcgtgcg ccaaaaggac ggcaaggaag tgttttcagg cctggtcaag
     1501 gctgacagcg tgcagcgagt ggcaggcgac gcaccgttca agatcacggt tggaaatcgg
     1561 gc
//
LOCUS       DATGBK010001789         2851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_137004, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001789 DATGBK010000000
VERSION     DATGBK010001789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137004"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..358
                     /locus_tag="VKJ77_25210"
     CDS             <1..358
                     /locus_tag="VKJ77_25210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoketolase"
                     /protein_id="HMC48641.1"
                     /translation="LSGRDFDSIFSREKPVIFNFHSYPSLVHKLTYNRTNHENMHVHG
                     YRERGNINTPFELAIINQVDRFSLCIDVIDRVPRLRDTGAHTKNWLKDQINASITYAH
                     AEGIDRDEIRNWVWKG"
     gene            363..1493
                     /locus_tag="VKJ77_25215"
     CDS             363..1493
                     /locus_tag="VKJ77_25215"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007177355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006083 - acetate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate/propionate family kinase"
                     /protein_id="HMC48642.1"
                     /translation="MTFGILVLNSGSSSLKFGVYMPGKTSGSTPDDSDETPWLTGSAK
                     GIGRDDGSLTMRSSDGAIDVTQNHVMESQHDALQRVADALHAHLDQPLAAVGHRVVHG
                     GPHLTDHALITPEVKQILRDAVQFAPLHLPQALELLDLAQQIFNDVPHYACLDTAFHR
                     TMPARATHLALPKHYADEGVVRYGFHGLSYESIVATLGNDLPARLVVAHLGSGASLCA
                     IRDGRSIDTSMGLTPTGGIPMGTRTGDLDPGVLVYLMRTGSLDADALEHLINHESGLK
                     GLSDSNDDMQALLQRTDADAELAIDIFCTAVRKTIGAYAALMGGLDRVVFTGGIGEHA
                     ATVRERICDGLEFLDVQFDVIETQEERQIARHCRRLLRQAAG"
     gene            complement(1535..>2851)
                     /locus_tag="VKJ77_25220"
     CDS             complement(1535..>2851)
                     /locus_tag="VKJ77_25220"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC48643.1"
                     /translation="AKSGRRVYCSGVVTPLSDPKFTGYAKIVRDLTGRKAQEDARQSQ
                     LAEERAVRAQAEAANRLKDDFLAVLSHELKHPLNLIHVKAEMLPRIPEARGVPAIQFA
                     ADAIQRAVLGQAKIIDDLLDLSRVRTGKLALNLAMGDVAAMLRTIADAIEADAASRGI
                     ALSFEGLDEPVWTKVDPVRFDQIVWNLLSNALKFTPRGGSVSVRLTCEEDELRIDVTD
                     TGLGIEAPLLPHIFEMFFQGIEARRKTGGGMGIGLALVKQLVEMHAGSVLAHSDGAGR
                     GTRMSVWLPLVDGHPVGKHEPEERAGSLAGVRMLVVDDDSETASAFAALLELEGALVA
                     TAHDGEDALALLERNHVDLLVCDISMPGMDGYELMGRVRADPRLAQLPAIALTGYTVG
                     ADDQRARASGFDLTLTKPVSLDALIAAAEQVFFWRGAQGGGTHEHG"
BASE COUNT          538 a          945 c          837 g          531 t
ORIGIN      
        1 tttgtccggt cgcgatttcg attccatttt ctcgcgcgag aagccggtca tcttcaactt
       61 ccactcgtat ccgtcgctcg ttcacaagct cacgtataac cgcacgaatc acgagaacat
      121 gcacgtgcac gggtatcgag aacgcggcaa catcaatacg ccgttcgagt tggcgatcat
      181 caatcaggtc gaccgctttt cactgtgtat cgatgtgatc gatcgtgtac cgcggcttcg
      241 cgataccggc gctcacacga agaactggct caaggaccag atcaacgcga gcattactta
      301 cgcccacgcg gaaggcattg accgcgatga aatccgtaac tgggtttgga aaggctgaga
      361 ctatgacctt tggtatcctg gtgctgaaca gcggttcgtc gtcgctgaaa ttcggtgtgt
      421 atatgcccgg caaaacgtcg ggttccacgc cagacgacag cgacgaaacg ccgtggctga
      481 ccggcagcgc gaagggcatc ggccgcgatg acggctcgtt gaccatgcgt tcatcggatg
      541 gggcgatcga tgtcacgcaa aaccacgtga tggagtcgca gcacgacgcg ttgcagcgcg
      601 tggccgacgc actgcacgcg catctcgacc agccgctggc cgcggtgggg catcgggtag
      661 tgcatggcgg tccgcacctg accgaccatg cgctcatcac gcccgaggtg aaacagatct
      721 tgcgcgatgc tgtgcaattc gcgccgttgc atctgccgca agcgctggaa ctgctcgatc
      781 tggcacagca gattttcaac gacgtgccgc attacgcctg cctcgacacc gcgttccacc
      841 ggaccatgcc cgcgcgtgcc acccacctcg cactgccgaa acactacgct gacgaagggg
      901 tagtccgata cggcttccac ggcctgtcat acgagtcgat cgtcgcaacg cttggcaacg
      961 atcttcccgc acgactcgtg gttgcgcatc tcggcagcgg cgcaagcctg tgcgccatcc
     1021 gcgatggccg ttcaatcgat acaagcatgg gtctcacgcc gaccggcggc attcccatgg
     1081 gaacgcgcac cggtgacctc gaccctggcg tgctggttta tctgatgcgg accggttcac
     1141 tggacgccga cgcgctcgaa cacctgatca atcacgaaag cggcctaaag ggtctctctg
     1201 attcgaacga tgacatgcag gcgcttctgc aacgcactga cgcggatgcg gaacttgcca
     1261 tcgatatctt ctgtactgct gtacgaaaaa cgatcggcgc gtatgccgcg ctaatggggg
     1321 gtctcgaccg cgtggtgttc accggcggga ttggcgagca cgccgcgacc gtgcgtgaac
     1381 gcatttgcga cggacttgaa tttctcgatg ttcagttcga cgtgatcgag acgcaggaag
     1441 aacggcagat tgcgcgtcat tgccgcaggt tgcttaggca ggcggccggc tgattgcggc
     1501 tcgtcagggt aacgtcaatt cacactgtca cccatcagcc atgctcgtgc gtgccgccgc
     1561 cctgcgcccc gcgccagaag aacacctgtt cggcggcggc aatcagcgca tcaagagaca
     1621 ccggcttggt taacgtcagg tcgaagcccg acgcgcgtgc gcgctggtcg tcggcaccca
     1681 ccgtatagcc ggtcaacgca atcgcgggca actgggccaa gcggggatcc gcccgcacgc
     1741 ggcccataag ttcgtagcca tccatgccgg gcatgctgat gtcgcagacc agcaggtcca
     1801 cgtgattgcg ttcgagcagc gcgagcgcgt cctcgccgtc gtgcgcggta gcgaccagcg
     1861 cgccttcgag ttccagcaaa gccgcgaatg cgctcgcggt ttcggagtcg tcgtcaacga
     1921 ccagcatgcg cacgcccgcc agcgatccgg cgcgttcctc cggctcatgc ttccccacgg
     1981 gatggccgtc gaccagcggc agccagacgc tcatccgcgt gccccgccca gccccgtccg
     2041 aatgcgcgag cacgcttccc gcatgcatct ccacgagttg cttgaccagc gcaaggccga
     2101 tgcccatgcc gccgccggtc ttgcggcgtg cttcgattcc ctgaaagaac atctcgaaga
     2161 tatgcggcaa caacggcgct tcgatcccca gcccggtatc ggttacgtca atgcgcagct
     2221 cgtcctcctc gcacgtgagg cgaacagaaa ccgagccgcc ccgcggcgta aacttcagag
     2281 cgttgctcaa caggttccac acgatctggt cgaagcgtac ggggtccacc ttggtccaga
     2341 ccggctcgtc cagaccctcg aacgacagcg cgatgcccct tgatgccgcg tccgcttcga
     2401 tcgcatcggc aatggtccgc agcatggctg cgacgtcgcc catcgcgagg ttcagcgcca
     2461 gcttgccggt acgcacgcgc gacaggtcca gcaagtcgtc aatgatcttc gcctgaccaa
     2521 gcacggcccg ctggattgcg tccgccgcga actggatcgc cggtacgcca cgcgcctccg
     2581 ggatgcgcgg caacatctcc gccttcacgt gaatcaggtt gagcgggtgc ttcaattcat
     2641 gcgacagcac ggccaggaaa tcgtccttga gccggttcgc cgcctccgcc tgcgcccgca
     2701 ccgcacgctc ctcggcgagt tgcgactgcc gcgcgtcttc ctgcgccttg cggccagtga
     2761 ggtccctcac gatcttcgcg tagcctgtga atttcggatc ggacagcggc gtcaccacgc
     2821 cgctgcaata cactctgcgg ccgctcttcg c
//
LOCUS       DATGBK010001790         2548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_21079, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001790 DATGBK010000000
VERSION     DATGBK010001790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21079"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..979)
                     /locus_tag="VKJ77_25225"
     CDS             complement(95..979)
                     /locus_tag="VKJ77_25225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017332912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo hydroxylase family protein"
                     /protein_id="HMC48644.1"
                     /translation="MTESQIIEVASADWQGQQLSVPREALLAGVERGKVLYFPHLAFA
                     VEGGERALLDPKVADPERKNISLAPNGGPLAGVLGDAVTQSAVRALIARYQANARSLV
                     DGLFPEYRDKLRVAPTSLRLHRVETRETSWRKDDSRLHVDAFPSRPNYGERILRVFTN
                     VNPDGAPRVWRVGEPFEDMAKRFLPAIKAPVPGAAWLMNLLHITKTPRSEYDHLMLHL
                     HDAMKADLDYQAKSPQQEMPFPPGCVWVCFSDQASHAVMSGQYMLEQTFFLPVSAMAQ
                     PDCAPLGILQRLKGRALV"
     gene            complement(1350..2354)
                     /gene="waaC"
                     /locus_tag="VKJ77_25230"
     CDS             complement(1350..2354)
                     /gene="waaC"
                     /locus_tag="VKJ77_25230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HMC48645.1"
                     /translation="MSSVQKILIVRVSSLGDVVHNMPAIADIRRLHPDAQIDWLVEES
                     FTDLVELVDGVRRAIPFSLRRWRKRLFSFDNWREIQRFRRALAAEKYDLVIDCQGLIK
                     TAWVASWARGTLVGLGNRTDGAGYEWPIRFFYDKRVPIEPRTHVVERTRQLVAAALGD
                     PRPEATDEIEFGIDTRRAALALSEAGLNLPVPYVVFVHATSRADKQWPETAWIELGQT
                     LIRRGVSIVLPWGSETERETSDKLAKEFGAAAVVPPKLSLPAVVGLIDGAAATVGVDT
                     GLVHIAAALKRPTVELYNFSTAWRTGGYWSPRVVNLGSANQHPTLQQVKATLAGFGLL
                     "
BASE COUNT          440 a          752 c          829 g          527 t
ORIGIN      
        1 gagcctcagc atcgagcgcc ctcgcggctg gccggcggca attgctcacc ggccctatgg
       61 aagcccgcgc accatcccca ccaggctgcg gcgctcaaac cagcgccctg cctttcaggc
      121 gttgcaggat tccgagcggc gcgcagtcgg gctgggccat ggcgctgacg ggaaggaaga
      181 aggtttgctc gagcatgtac tggccggaca tgacggcgtg cgaggcttga tcggagaaac
      241 acacccacac gcaaccgggc ggaaacggca tttcctgctg cggcgatttc gcttgatagt
      301 cgagatcggc cttcatcgcg tcgtgcaaat ggagcatcag gtggtcgtat tcgctgcgtg
      361 gcgtcttggt gatgtggagg agattcatga gccacgccgc gccgggaacc ggggctttga
      421 tagcaggcag gaagcgtttt gccatgtcct cgaacggctc gccgacgcgc cacacacgcg
      481 gcgcgccatc cggattgacg ttggtgaaca cgcgcaggat gcgctcgcca taattcggcc
      541 gcgacgggaa agcatcgacg tgaaggcggc tgtcgtcctt gcgccacgac gtctcgcgcg
      601 tttccacgcg atgcagccgc aggctggtcg gtgcgacccg caacttgtcg cgatattcag
      661 ggaacagccc gtcgaccagc gagcgcgcgt tcgcctgata tcgcgcgatc aacgcgcgga
      721 cggcggattg cgtgacggcg tcgccgagta cacccgcgag cgggccgcca ttgggcgcaa
      781 ggctgatgtt cttgcgctcg gggtccgcga cctttgggtc caggagcgcc cgttcgccac
      841 cttctacggc aaacgccaga tgcggaaaat acaggacctt gccgcgctcg acgccggcca
      901 gcaacgcctc gcgcggcacg gaaagctgtt ggccctgcca gtcggcggag gcaacttcaa
      961 taatttgaga ttcggtcatg tgccttcgat ttgtttggat gagcgcgtga gcgggcccga
     1021 tttatcttca accggcttca atcggcttca atcggcttca atcaacctcg attggctttg
     1081 attgacgcat cggggaaacg tcgcgcccgg cgagcgcggt gcattttcgc tcaaaccgac
     1141 tgcaaaatcc gccgtgtgaa acgctagcag ttgatggacc tcaaaccgcc gggtttcgct
     1201 tggttttggt tggtttcgtc aaacgacgca cgacgcgccg ccggtttatc tcggcgattg
     1261 acccaatcct tcaaaccgaa actgcttcct caccgcactc cacggccctg ctaccgccac
     1321 ctaccctatc cgatactgtt gttcgtgcat caaagcagcc cgaagcctgc gagggttgct
     1381 ttgacttgct gcaaggtcgg gtgctggttt gcgctaccca gattcactac gcgcggcgac
     1441 cagtaaccgc cggtgcgcca ggcggtcgag aaattgtaca actcgacagt cggccgcttc
     1501 agggctgctg cgatgtgcac gagtccggtg tccacaccta ctgttgctgc tgcgccgtcg
     1561 atcaggccga ctactgccgg cagcgagagt tttggcggca cgaccgctgc tgcgccgaat
     1621 tctttcgcca gtttgtcgct tgtttcgcgt tcggtctcac tgccccatgg aagcacgatt
     1681 gataccccgc gccggatcag tgtttggccg agttcgatcc atgctgtctc gggccattgt
     1741 ttatcggcgc gagacgtggc gtggacgaac accacgtacg gcaccggcag gttgagccct
     1801 gcctccgata aagccagcgc ggcgcggcgg gtatcgatgc cgaattcgat ctcatcggtc
     1861 gcttcggggc gtggatcgcc gagtgcggct gcgaccagtt gccgggtgcg ctcgaccacg
     1921 tgggtacgcg gctcgatggg tacgcgtttg tcgtagaaga aacgaatggg ccattcgtag
     1981 ccggcgccgt cggtgcggtt accgaggccg accagcgtac cgcgcgccca gcttgcgacc
     2041 catgcggttt tgatgaggcc ttggcagtcg atgacgaggt cgtatttttc tgcggccagt
     2101 gcgcggcgga agcgttggat ttcgcgccag ttatcgaatg aaaagaggcg tttgcgccag
     2161 cgccgcaacg agaacggaat ggcgcggcgt acgccatcga cgagttcgac gagatccgtg
     2221 aagctctctt cgactagcca gtcgatctgg gcatcggggt ggagacgacg gatatcggcg
     2281 atggccggca tgttatggac gacgtcgcct agggacgaca ctcggacaat caagatcttt
     2341 tgcacgctgg acacggtggg cgccgtcgga ttggacggcg cgtggacaat tttttgagat
     2401 gcgccggagt ttaccgctgg cgctcggggt tcggtttagt ttttcgctcg cgcttggggt
     2461 tggggttttg ctcgcgcgtg gtggatttgg ggttcgcggt cggggttgat gccgggttgc
     2521 caggttcctg cgttagcggt ctgagtca
//
LOCUS       DATGBK010001791         1944 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_299054, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001791 DATGBK010000000
VERSION     DATGBK010001791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1944
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299054"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            268..1041
                     /locus_tag="VKJ77_25235"
     CDS             268..1041
                     /locus_tag="VKJ77_25235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012406001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HMC48646.1"
                     /translation="MDINFECTMCGKCCHDLKLPLSVDEALMWLERGGDVQFLCEAVP
                     WPDEPPADNLQAQHKRRRSFAASSGELPVRVVVVLAASFEGACPHLQANMSCGVYDQR
                     PTVCRIYPAEINPFIELKPEQKECPPEAWASDKPLLMSAQRVVDPETFALIAKSRAAD
                     VSDAPAKARACADLDIDAAALANEGLVVYSPPGDLAIAALKRARENREADEDVLQWKI
                     VSNRRETVDTLISIGATGVHYVKSDAPAFDYLGFFPASA"
     gene            complement(1111..1935)
                     /gene="ehuA"
                     /locus_tag="VKJ77_25240"
     CDS             complement(1111..1935)
                     /gene="ehuA"
                     /locus_tag="VKJ77_25240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033286 - ATPase-coupled ectoine
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0033288 - ATPase-coupled hydroxyectoine
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0033308 - hydroxyectoine transport
                     [Evidence IEA];
                     GO_process: GO:0051470 - ectoine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ectoine/hydroxyectoine ABC transporter
                     ATP-binding protein EhuA"
                     /protein_id="HMC48647.1"
                     /translation="MKRDLDPALDAGALAPNVQPMVRFAGVTKRYGSLTVLDALDLEV
                     ARNEKVAIIGPSGSGKSTLLRVLMTLDPLSDGVIEVEGEPLTHMRRNGALVPASERHV
                     REVRRKIGMVFQSFNLFPHMTALQNTIEAPLRVLGMSKRDANERGRELLSMVGLDDKC
                     NHFPSQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELCGEVLNVIRKLGHEHDL
                     TMLMVTHQMGFAKEFADRVCFFSQGKIIEQAPPQQFFGAPQHERTQQFLRAVREAT"
BASE COUNT          380 a          588 c          582 g          394 t
ORIGIN      
        1 tctgactgag tatttcttgc gccgctaaag ggaatagaat ctgcccgggc gaagtctcgc
       61 ttgacgcacg aggcccgcat caatcgataa aggcatgcga acgatcgttc attgcgtagt
      121 tgctgaagat tcgcgcagga aaaccgggga gcatgtaacc cgctgcctga agtcgccgaa
      181 ctagcataca ggtcgccctt tatcatccga caccgtgaca gcgcttgacg acaattacag
      241 atgcctttcg aggagaagcg tcacccgatg gatatcaact ttgaatgcac gatgtgcggc
      301 aaatgctgcc acgacctcaa gctgcctttg agcgttgacg aagcgctcat gtggctcgag
      361 cgcggcggcg atgtccagtt tctgtgtgaa gccgttccct ggcctgatga gccgcctgcc
      421 gacaacctgc aggcgcagca taagcggcgc cggtcgttcg ccgcttccag cggcgaactg
      481 cccgtgcggg tagtcgtggt cctggcggca tcgttcgagg gtgcgtgtcc gcacttgcaa
      541 gcgaacatga gttgcggcgt gtatgaccaa cgcccgactg tctgccggat ctatcctgcg
      601 gagatcaatc cgttcatcga gttgaagcct gagcagaagg aatgtccgcc ggaagcgtgg
      661 gcctcggaca agccgcttct gatgagcgca caacgcgtgg tcgatcccga gacgtttgcg
      721 ttgattgcca aatcgcgtgc ggccgacgtc agcgacgcac cggcgaaagc gcgcgcatgc
      781 gccgatctgg acattgatgc ggcagcgctg gctaacgagg gtttggtggt ctactcgccg
      841 cctggcgacc tggccatagc tgcgttgaaa cgtgctcgcg agaaccgtga agcagatgag
      901 gacgtgctgc agtggaagat cgtgtcgaac cgtcgcgaaa ccgtggacac gctcatatcc
      961 ataggagcaa caggcgtcca ttacgtcaag tcggacgcgc ccgcgttcga ttacctcggc
     1021 ttctttcccg cctcggcgtg atccttgatc aatgcccgga ccgatcgatc gggatcggtc
     1081 caagctcact gagttcacgc caggttcatg ctaggtcgct tcacggacag cacgcaggaa
     1141 ctgctgcgtg cgctcatgtt gaggtgctcc gaagaactgc tgcggcggcg cctgttcaat
     1201 tatcttgcct tgcgaaaaga aacacacgcg gtccgcgaat tctttcgcga accccatctg
     1261 gtgagtcacc atcagcatgg tgagatcgtg ctcgtggcca agcttgcgaa tcacgttcag
     1321 cacttcgccg cataactcgg gatcgagtgc tgaggtcact tcgtcgaaca gcatcacttt
     1381 cggccgcatt gccagcgccc gcgcaatggc cacgcgctgc tgctgcccgc ccgacagctg
     1441 cgacgggaag tgattgcact tgtcgtcgag cccaaccatg gacagcagct cccggcctcg
     1501 ctcgttcgca tcgcgcttgg acatgccgag cacccgcagc ggcgcctcga tcgtattctg
     1561 cagcgccgtc atatgcggga acagattaaa gctctggaac accataccga tcttgcggcg
     1621 cacttcgcgg acatgccgct cggatgcagg taccagcgcg ccattgcggc gcatgtgcgt
     1681 aagcggctcg ccttccactt cgatcacccc gtcgcttagc ggatcgagcg tcatcagcac
     1741 gcgcagcaag gtggattttc ccgacccgct tggtccgatg atcgcgacct tctcgttgcg
     1801 ggcgacctcc agatcgagcg catcaagcac ggtgagcgag ccgtatcgtt tcgtgacgcc
     1861 ggcaaagcgt accatgggct ggacgttggg cgcgagagcg cctgcatcga gtgcggggtc
     1921 gagatcccgt ttcatctgct tctc
//
LOCUS       DATGBK010001792         1803 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_252681, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001792 DATGBK010000000
VERSION     DATGBK010001792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252681"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..325
                     /locus_tag="VKJ77_25245"
     CDS             <1..325
                     /locus_tag="VKJ77_25245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011883058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HMC48648.1"
                     /translation="RSATGIDAIAHAIKLVEYGAGEVLLTSMDRDGTRVGYDIPLTRA
                     IADAVPVPVIASGGVGKLDDLVAGIREGHASALLAASIFHFGEVTITQAKQALAHAGL
                     PVRLA"
     gene            340..1275
                     /locus_tag="VKJ77_25250"
     CDS             340..1275
                     /locus_tag="VKJ77_25250"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HMC48649.1"
                     /translation="MEEPRVAIVRSYRPSHGFANARAVTARRVRLTKRMSVEEAFRAT
                     VLECLAQVGGNAPAIRARDSRGIHQIRVGLRRLQMALKSFGEYADTPALKTLGKRGRS
                     LANVFGPARDLDVFADELLPRLDLKFSGHESFIALQLALRHARGEAWDDALAEILNPE
                     FGAFLNDVAAVAETLPHNDTRIGKFSGLALDELYSQVRKRRKRAHRVYDARTHKLRIA
                     LKKLRYAAEFFAPLYSQKRAAKYIRTMKLLLNELGDTNDAHGVGELMRRLGDAPELSF
                     AKGAIAGWYAAKEKRLATRALKSWRKFKRLKPFWT"
     gene            complement(1256..>1803)
                     /locus_tag="VKJ77_25255"
     CDS             complement(1256..>1803)
                     /locus_tag="VKJ77_25255"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HMC48650.1"
                     /translation="GRIQGRIDMALSEAGRTKMAGLLPPEGFGAARAFVSPLGRARET
                     ARLLALADPIVDERLSEHHWGEWEGVTREEILARDGADAFLRAGSGIDFRPKGGESTR
                     ELLTRVSDFLHDVANGRSDAIAVAHRGILRSAYTLATGWDMTSPMPAKLDLSLALILS
                     LDTDGTVRIAEMNVPLRSKTV"
BASE COUNT          322 a          584 c          565 g          332 t
ORIGIN      
        1 gcgcagcgcc accggcatcg acgccatcgc tcacgccatc aaactggtcg aatatggcgc
       61 gggcgaagtg ctcctcactt ccatggaccg agacggaacg cgcgtgggct acgatattcc
      121 tctcactcgc gcaatcgccg acgcggtccc ggttccggtg atcgcgtctg gcggtgtggg
      181 caagctggac gatttggtcg caggcattcg agagggccac gccagcgcct tgctggccgc
      241 ttcgatcttc catttcggcg aggtcaccat cacgcaggcc aagcaggcac tcgcccatgc
      301 gggattgccg gttcgtctgg cgtgaggaat gatgggcgca tggaagaacc gcgcgtcgcc
      361 atcgtccgct cctatcgtcc gtcccatggt ttcgccaatg cccgcgcggt gacagcgcgc
      421 cgggtgcgcc tgaccaagcg catgtcggtg gaagaggcgt ttcgcgcgac ggtgctcgaa
      481 tgcctggcgc aggtcggagg caatgccccg gccatccgtg cccgcgattc gcgcggcatc
      541 catcagattc gcgttggact tcgcaggttg cagatggccc tcaagtcttt cggcgaatat
      601 gccgatacgc cggcgctcaa aacgctgggc aagcgtggac gcagcttggc caacgtattc
      661 ggaccggcgc gcgatctgga tgtctttgcc gatgaattgt taccccggct cgatctgaaa
      721 ttctcgggcc atgaatcctt catcgcgctg cagctggccc tgcggcacgc ccgtggcgag
      781 gcgtgggacg acgcgttggc ggagattctc aatcccgaat tcggtgcatt cctcaacgat
      841 gttgccgccg tcgccgaaac cttgccgcat aacgacacgc gtatcgggaa gttttccggt
      901 ctggcgctgg acgagcttta ttcgcaggtg cgcaagcgcc gcaagcgcgc gcatcgcgtc
      961 tatgacgcgc gcacgcacaa gctgcgcatc gctctcaaga agctgcgcta tgcggcggaa
     1021 ttcttcgctc cgctctattc gcaaaagcgt gcggcgaagt acatccggac gatgaagctg
     1081 ctgctcaacg agctaggcga cacaaacgat gcgcacggcg tcggcgagtt gatgaggcgg
     1141 cttggagacg cgcccgaact cagcttcgcc aagggcgcga tagcgggatg gtatgcggca
     1201 aaggaaaaac gccttgcgac gcgggcgctg aaaagctggc gcaagttcaa acggctcaaa
     1261 ccgttttgga cctgagcggt acgttcattt ccgcgattcg caccgttcca tcggtgtcca
     1321 gagaaagtat cagcgccagc gacaggtcga gtttggccgg catcgggctc gtcatgtccc
     1381 agccggtcgc cagcgtgtag gcagaacgca ggattccgcg atgcgccacc gcgatggcat
     1441 cggagcgtcc gttcgcgacg tcgtgaagga agtccgagac gcgtgtcaga agctctcgcg
     1501 tgctttctcc gcccttgggc cggaagtcga tcccgctacc ggcgcgcaag aacgcgtccg
     1561 cgccgtcgcg cgccaggatt tcctcgcgcg tcaccccttc ccactcgccc cagtgatgtt
     1621 cgctgagccg ctcatcgacg atgggatcag ccagagcaag cagcctcgcg gtttcacgcg
     1681 cgcgtccaag cggactgacg aacgcgcgcg ctgcgccaaa tccctccggc ggcagcaacc
     1741 ctgccatctt cgtccgcccg gcctcactca aggccatgtc gatgcggccc tggatgcgcc
     1801 cct
//
LOCUS       DATGBK010001793         4669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_183222, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001793 DATGBK010000000
VERSION     DATGBK010001793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4669
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183222"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..658)
                     /locus_tag="VKJ77_25260"
     CDS             complement(74..658)
                     /locus_tag="VKJ77_25260"
                     /inference="COORDINATES: protein motif:HMM:NF024701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WHG domain-containing protein"
                     /protein_id="HMC48651.1"
                     /translation="MTIRKTSKQALTDVAKRPYHHGALREAMLEAAERILAREGIGGL
                     TLRAAAREAGASHAAPKNHFDNVTGLLSELAAVGFRRFAHRLLEAAAAAATPEGRLVA
                     QGRAYVEFATQFPGLFMLMFRSERLDLERPGLREAMSGASSMLRAAVGAPQEPDGILP
                     TDGAARIVTAWALVHGFAMLQIDGRLDAIVRSLP"
     gene            756..1331
                     /locus_tag="VKJ77_25265"
     CDS             756..1331
                     /locus_tag="VKJ77_25265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014194147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrU family protein"
                     /protein_id="HMC48652.1"
                     /translation="MTIFVAGLLIFLAIHSVSIVAPGWRDAQAGRIGENAWKGLYALV
                     SIVSLVAMIYGYGIARQIPVMVYVPPIALRHLAFLLMLPVFPLLIAAYLPGRIKRMAR
                     NPMLLAVILWAVSHLLANGTLNDLLLFGGFLVWAVADLISVSRRPHVRPLPGAPASAM
                     NDGIVIVAGLGLYVFVLLWAHARVVGVSPLG"
     gene            complement(1686..2570)
                     /locus_tag="VKJ77_25270"
     CDS             complement(1686..2570)
                     /locus_tag="VKJ77_25270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018004812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48653.1"
                     /translation="MNWDDTRVFLAVEREKTLRGAARTLNLDQATVGRRIAALEHALR
                     ATLFLRTSEGYALTAAGEAALRSAEKMEHSAHELVRRIQGTDTRLAGDVRVTSTDSIA
                     LEFLLPAIERLHAAHPEVRVLLDTSTRMLNLAKREADIAVRSVRPDNPELIARRLARW
                     PMALFASKAYLEQHGKPAPGSAFEGHDLVVYQGNWTGSRSPTLAGEPIHAGRVVSTFN
                     SSLMLRTAVKAGIGIGELPIHLAEHDGLVQIWPEPARGAVYEIWLVTHQDLRHTARIA
                     AMIDGIVAAFEDHTNHTQ"
     gene            2723..3754
                     /locus_tag="VKJ77_25275"
     CDS             2723..3754
                     /locus_tag="VKJ77_25275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008917792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HMC48654.1"
                     /translation="MSASTYRVPSSMTAIEIKQPGGPEVLVPTTRPVPMPAADQVLIR
                     IHAAAVNGPDVFQRKGLYDPPPGASDIPGLEVAGQVVAVGADASQFRIGELVCALIPG
                     GGYAEYAVAHACNTMHIPKGLTLVEAGAMPETFMTVWLNLFQRGKFVAGESVLIHGGA
                     SGIGTTATMLAKAFGAAKIITTVGSQAHREASLALGADLAINYREEDFVAATKRFTDG
                     RGVDVILDIIAGDYVARNYDAAAMDGRILQVGVIKGPAKDLDVLPMLTKRLTHMGSTL
                     RSRTSADKATIINELERQVWPHIESGKIKPVIYKTFALADARGAHELIDSGKHFGKIV
                     LTTGADLIV"
     gene            complement(4197..>4669)
                     /locus_tag="VKJ77_25280"
     CDS             complement(4197..>4669)
                     /locus_tag="VKJ77_25280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007851611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HMC48655.1"
                     /translation="VELNKPKDWIDSIDFSDPVAAKAHIAKEFDGWAPELTALITDGE
                     TDPVPRPIHALPVDHRWARVPGVTLLGDAAHLMIPSGEGANLAMFDGAELGKAIAAHP
                     GDAEAALTAYEKDLFPRSASEAAESEGILNVCLGPNAPQSLVDFFTSTDNQPAK"
BASE COUNT          875 a         1398 c         1408 g          988 t
ORIGIN      
        1 cagagtcgct acttctcagt tggccgccgc ccgcattgag aatgacatcg agcaacgcca
       61 ttgcgtccat gccctacggc aggctacgga ctatggcgtc gagacgcccg tcaatctgta
      121 gcatggcgaa cccatggaca agcgcccaag cggtaactat ccgcgcggca ccgtccgtcg
      181 gcaggatgcc gtcgggttct tgtggcgccc cgaccgccgc gcgcaacatc gacgatgcac
      241 cgctcatcgc ttcgcgcaaa cccggccttt cgagatcgag ccgttcactg cgaaacatca
      301 gcatgaagag acccggaaac tgcgtcgcga actcaacgta ggcacgcccc tgagcgacaa
      361 gccgcccctc gggcgtagcg gccgcggcgg ccgcttcaag caggcgatgc gcgaagcggc
      421 gaaaacctac ggctgccaac tcgctgagca gcccggtcac gttgtcgaag tggttcttgg
      481 gcgcggcgtg agaagcgccg gcctcgcgcg cggcggcacg cagagtgagc ccgccgatgc
      541 cctcccgagc aaggatgcgc tcggccgctt ccagcattgc ctcacgcaat gcgccatggt
      601 gatacggacg cttggccacg tcagttagtg cttgtttgct cgtctttcta atggtcatct
      661 gtttccacca atgttgacgc cgtcaatttt agcttgacga acgcaggcgc agcacttatt
      721 ttaaatgttg ctaccgtcaa catttgatcg aaactatgac aatcttcgtt gcaggtctgc
      781 tgattttcct cgccattcac tccgtctcca tcgtcgcgcc aggttggcga gacgcgcaag
      841 ccgggcgaat tggcgagaac gcgtggaaag gactgtatgc gctagtgtcg atcgtgagtt
      901 tggtcgcgat gatctacggt tacggcatcg cgcgacagat accggtcatg gtctacgtac
      961 caccaatagc gctgcggcat ctcgcgttcc tgctcatgtt gccggtgttt ccgctgctga
     1021 tcgcggctta tctgccgggt cgaattaaac gcatggcccg gaatccgatg ctgctcgccg
     1081 tgattttgtg ggcggtgtcg catttgctcg ccaacggcac gctgaacgac ctgctgctgt
     1141 tcggcggttt tctcgtctgg gcggtggcgg acctgatctc ggtcagccga cgcccccacg
     1201 tccgcccgct gccgggcgca ccagcttctg ctatgaacga tgggattgtc atcgtcgcgg
     1261 gcttggggct gtacgtgttc gtgctgctat gggcacatgc gcgcgtggtc ggcgtgtcgc
     1321 cgctagggtg aatgcgactg gcaggcatcg cacaggtctc cggttgtgtc ttaagaagac
     1381 cacggagccg aaaatctcca agccgaccct cacgctgcgt gttgaagcgc agcaattgaa
     1441 aacgaaagca taggaacctg ttatctctat caggtatgcg ctcatgacta accgatactt
     1501 cgcatacctg atcttgtcat tacaacaacg gaccctccct tattgcaggt gaacggctgt
     1561 cgaagcttat tcggttcacc cgctcaatgc acatgtcgct ccccaaccgc gaccggtgtt
     1621 tggggcgaac gaatccctgc cgcgtttcaa accgccgagg cctaccctct ctaagtcgcg
     1681 cgtgactatt gcgtgtggtt tgtgtgatct tcgaacgcgg cgacgatgcc gtcgatcatt
     1741 gctgcgatgc gcgcggtatg ccgaaggtct tgatgcgtga cgagccagat ttcgtagacc
     1801 gcgccacgtg cgggttccgg ccatatctgc acgaggccgt cgtgttcagc gagatgtatc
     1861 ggaagctcac cgatgccgat gccggccttt accgcggtac gcagcatgag gctcgaattg
     1921 aaggtcgata cgacgcgccc cgcgtgtata ggttcgccag caagagtcgg cgatcgacta
     1981 ccggtccagt ttccttgata gacgacaaga tcgtgaccct cgaatgcgga gccaggggca
     2041 ggcttgccgt gctgctcaag atatgctttc gatgcaaaga gcgccatggg ccagcgagcc
     2101 aggcgtcgcg cgatcagctc gggattatcc ggcctgactg atcggaccgc gatatcggct
     2161 tcacgctttg ccagatttag catgcgcgtc gacgtgtcca gcaggacacg cacttcggga
     2221 tgcgctgcat gcaggcgttc gatggcggga agcaggaatt cgagcgcgat cgagtcggtg
     2281 ctggtgactc ttacgtcccc cgcgagccgt gtgtccgtgc cttgaattcg tctgacgagt
     2341 tcgtgtgcgg agtgttccat tttctccgcg gagcgcagcg cggcctctcc tgcagcggtc
     2401 aaggcgtaac cctcagaggt gcgtagaaag agcgttgcgc gaagggcgtg ctctagtgcc
     2461 gcaatccgtc tgccgaccgt cgcctgatcg agattgagcg tcctggccgc gccacggagc
     2521 gttttttccc gctccaccgc gagaaacact cgcgtgtcat cccagttcat cgtgccaccc
     2581 tccctgatgc aaatttgcat gtcatcacgt gaatgatgct gcacatatgc agctatgtcg
     2641 agacctatac tgagcgcaag agtttctcgt tcaatgatcc gcccggatca atcgagcctc
     2701 atctatagaa ggagtgctat ccatgtctgc ttcaacttat cgtgtgccat cgtccatgac
     2761 ggccattgag attaaacagc ccggcggtcc tgaggtcctg gtgccgacca cgcgcccggt
     2821 gccgatgccg gccgccgatc aggttctgat ccgcatccac gcggctgccg tgaacggtcc
     2881 agacgttttc cagcgcaaag ggctctacga tccgcccccc ggcgcttcgg acattccagg
     2941 gctggaagtg gcaggtcaag tggttgccgt tggcgccgac gcgtcgcaat tccggatcgg
     3001 cgaactggtg tgcgcattga ttcccggcgg tggctacgca gaatatgcag tcgcgcacgc
     3061 ctgcaacacg atgcatatcc ccaaaggcct gacgttggtg gaagcgggcg ccatgcccga
     3121 aacgttcatg acggtatggc tgaacctgtt ccagcgcggc aagttcgttg ccggcgagtc
     3181 ggtgttgatc catggcggcg cgtcaggtat cggtaccacg gcgaccatgc tggcgaaggc
     3241 attcggcgct gcgaaaatca tcacgacagt tggctcgcag gcgcatcgtg aggccagtct
     3301 ggcgctcggc gcagacctcg cgataaatta ccgcgaggag gatttcgtcg ccgcaacgaa
     3361 gcggtttacc gatggaagag gcgtcgacgt gatcctcgac atcattgccg gcgactacgt
     3421 ggctagaaac tatgacgccg ccgcgatgga cggacggatc ctccaggtgg gcgtgatcaa
     3481 ggggccggcg aaggatctcg acgtcttgcc gatgctgacg aaacgtctga cgcatatggg
     3541 ctcaacattg cgatcgcgca catccgcgga caaggcgacg atcatcaatg aactggagcg
     3601 gcaggtctgg ccgcacatcg agagcggcaa gatcaagccg gttatctaca agacctttgc
     3661 gcttgccgac gctcgcggcg ctcacgagct gatcgattcc ggcaaacact ttggaaagat
     3721 tgtccttacg acaggtgccg atctcattgt ctgaggcctg gtttgcagcc aacaaacttg
     3781 tcctcaggat acgttcaagt ctgtgatgtc tgagtccgct tcactcaggt ttgtcctttc
     3841 cgtcacggcg cgttgcggag gttggcatcc gctacatctt cgcgccgcgc tcgctcttcg
     3901 cagtcgattc attgctcgca aacagtgcgg cgagccagtc gatgaacacg cgaaccttcg
     3961 tgctcaggtg agaccgcgtc gttgacagtg atgcccgacg tcgttcatcc ggttgcgttt
     4021 cccaagctcg gccgactggc agcgcgcgcg atggaaatgg acggattctc cagtacgttg
     4081 cccttcaagc agcagtgatt ccgcgtgaag cgagtcttgc gagccggtgc gggggcgcct
     4141 cgccccttgt tagcgccgaa cgcgatgaca ctgcgattta ctggcgtgca tctcgattac
     4201 ttcgcgggct ggttatcggt actggtgaag aaatcaacca ggctctgcgg cgcgttgggg
     4261 ccgagacaca cgttcaggat tccttctgac tccgcagcct cggacgcgct gcgagggaag
     4321 aggtcctttt cataagcggt gagcgcggct tcagcgtcac cggggtgggc ggcgatggcc
     4381 ttcccgagtt cagcgccgtc gaacatggcg aggttggccc cttccccaga cgggatcatc
     4441 aagtgcgctg catcgcccag cagtgtcacc cctggtacgc gcgcccatct gtggtcgacc
     4501 ggaagcgcat gaatagggcg aggcacaggg tccgtctcac cgtcggtgat gagcgctgtc
     4561 aactccggag cccagccatc gaactccttg gcgatgtggg ccttggcagc gaccgggtca
     4621 gagaagtcga tgctgtcaat ccagtccttc ggcttgttca actccacgt
//
LOCUS       DATGBK010001794         1844 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_206848, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001794 DATGBK010000000
VERSION     DATGBK010001794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206848"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            254..1162
                     /locus_tag="VKJ77_25285"
     CDS             254..1162
                     /locus_tag="VKJ77_25285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48656.1"
                     /translation="MDHTSLDIFRVVAAELSVTRAAKRLGRVQSNVTTRIQQLEEELG
                     VALFRRDGNRLTLSTEGERFLGYANRMLALADEARQALSPQAPSGTLRIGSMESTAAA
                     RLPGPLSALHVQYPDVQLRITTAPSRQLIEQVRNGLVDCAFAALPPCGEMASASDLEA
                     VGLHAEPVFREEILLVLPPGHAAVRQGADITVRSLAAFADGCSYRVLAEEWLGQDRSP
                     LDIQEVGSYHTMLACVAAGGCVSLVPRSVLELLREPPALRTHVVAKVDTCLIHRNGYE
                     TAAFNALREALAPFVSKNHAARRKSS"
     gene            1159..>1844
                     /locus_tag="VKJ77_25290"
     CDS             1159..>1844
                     /locus_tag="VKJ77_25290"
                     /inference="COORDINATES: protein motif:HMM:NF018485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HMC48657.1"
                     /translation="MSTIRQVSSTAGQGMAALVAALVMAVGMGFGRFAFTGIYPVMVS
                     DAVLTVHQGTLAASANYAGYLAGALLTAAVHPRHSRRLCMLALAGIVVCLGMTALLSA
                     PWLIIAMRGITGAVSAVTMVAASLWLLQHRGHTSGAPMLYAGVGMGIVLSSEMLIVGR
                     ALNLHSAGLWWVLAAGALILGAIALPSLDARPVESSGTRATVHGHESFPALGAGRLIA
                     LYGLAGFGYI"
BASE COUNT          313 a          562 c          602 g          367 t
ORIGIN      
        1 cgcagacaaa aagattgcgc cgccaatatg gcgcgttgcg ttcggcatag ctgagccccg
       61 ggacatgggc gccctgcggc ataaatgaac tggttgcttg attcatgagg gcctcgatcg
      121 ttctgtcagg cgttgggcga tggccgggcg catgggcgtc gatccgggtc accatcgcaa
      181 aagaagtaga cggcttgcat attatctcaa tttgggaata tgatgtttat atcgttctct
      241 aattgagatt ttcatggatc acaccagtct cgacattttt cgcgtcgtcg ccgccgaact
      301 cagcgtgacc cgggcggcca agcggctcgg ccgcgtgcag tcgaacgtga ccacgcgaat
      361 ccagcagctc gaggaggaac tgggggtggc actgtttcgg cgcgacggca accgccttac
      421 gctgagcacg gaaggcgagc gttttctcgg ctacgccaac cgcatgctcg cgctggccga
      481 cgaagcacgg caagcgctaa gcccgcaagc gccctcgggc acgctgcgaa ttggcagcat
      541 ggaaagcacg gctgcggcgc gtcttccggg accgctttca gccctgcacg tccagtaccc
      601 cgacgtccag ctcaggataa cgactgcgcc ctcgcggcaa ctgatcgaac aggttcgcaa
      661 cggtctggtc gattgcgcgt tcgcggcgct gccgccgtgc ggcgagatgg cgtcggcatc
      721 ggatctcgag gcagttggac ttcacgctga acccgtgttt cgcgaggaaa tcctgctcgt
      781 gctgccgccc gggcatgccg ccgtccgcca gggcgcggat atcaccgtgc gttcgcttgc
      841 cgcgttcgca gacggctgca gctaccgcgt gctcgctgaa gaatggcttg gtcaggacag
      901 gtcgccgctc gacatccagg aagtcgggtc gtatcacacc atgctggcgt gcgtcgcggc
      961 gggcggctgc gtatcgctcg tgccgcgcag cgtgctcgag ttgctgcgcg aaccgccggc
     1021 gttgcgcacg catgtcgtgg cgaaggtgga tacgtgcctc atccatcgaa acggatacga
     1081 gacggcggcg ttcaacgcgc tacgcgaagc gcttgcgcca tttgtgtcga agaatcacgc
     1141 agcaaggaga aaatcatcat gagcacgatt cgccaggttt catcgactgc aggccaaggc
     1201 atggcggcac tggttgccgc tctcgtcatg gcagtcggaa tgggcttcgg acgttttgcg
     1261 ttcacgggca tctaccccgt catggtcagc gatgccgtgc tgaccgtgca ccagggaacg
     1321 ctcgccgcat cggcgaacta tgcgggttat ctggccggag ccctgctgac tgccgcagtg
     1381 catccgcgac actcgcgcag gctgtgcatg ctcgcgctcg cgggcatcgt ggtttgtctc
     1441 gggatgacag cgctgttgag tgcgccctgg ctgatcatcg cgatgcgcgg catcacaggc
     1501 gccgtcagcg cggtcaccat ggtggcggct tcgctctggc tgctgcagca tcgcggccac
     1561 acgagcggtg cgcccatgct ttatgcgggc gtcggcatgg gcattgtgct gtcgtcggaa
     1621 atgctgatcg tgggacgtgc actcaatctg cacagcgccg ggctttggtg ggtattggca
     1681 gcaggcgcat tgatcctcgg tgcaattgcc ctgccgagtc tcgatgcacg cccggttgag
     1741 tcctccggta cgcgtgcaac cgtccacgga cacgagtcct tccctgcgct cggtgcggga
     1801 cggctgatcg cgctctacgg actggcgggc ttcggctaca tcat
//
LOCUS       DATGBK010001795         6844 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_113970, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001795 DATGBK010000000
VERSION     DATGBK010001795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6844
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113970"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..365)
                     /locus_tag="VKJ77_25295"
     CDS             complement(<1..365)
                     /locus_tag="VKJ77_25295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48658.1"
                     /translation="MTDDVPVLSTPSASSRLSPNDVPVGEPLVWPIVSVDGALLFEAG
                     SIVPSQAVRSFLFENFEPYKFEDATADDTNDLTRTAHANAGAPEDESVGHLTLDNIGL
                     KIGARLGLRAAPGSAMFSSR"
     gene            891..1406
                     /locus_tag="VKJ77_25300"
     CDS             891..1406
                     /locus_tag="VKJ77_25300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008158370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC48659.1"
                     /translation="MSKDEGSSDEAAVLHMVCGKIASGKSTLTKRLASTENAVVISED
                     VWMAHLYPGEIRTLDDYVRCSGRIRRALSDHVQALLSAGMSVILDFPFNTINSRAWGR
                     ELFVGAGVGHRLHYLDVSDEICKTRLRARNASGEHPFETTDAQFDQITQYFVPPSTTE
                     GFQIVLHASTL"
     gene            1530..2936
                     /locus_tag="VKJ77_25305"
     CDS             1530..2936
                     /locus_tag="VKJ77_25305"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine/phosphatidylglycerophosphate/
                     cardiolipin synthase family protein"
                     /protein_id="HMC48660.1"
                     /translation="MDQHDTRATTETGQHIPFIAHGSYPRREGNRVRPLVDSGPAFRR
                     ICEAVEQAQHSVWITVTFVATDFQMPDGRGSIFDVLDRAVERGVDVRVMFWRPNPESS
                     GYGQTFAGTSADFDLLAARGSRFLARWDRAPLAYCHHQKSWLIDAGRSSETAFVGGIN
                     PTFAVVEPGHMGEGQRHDIYVEITGPSASDVHHNFVQRWNEASERDMALGVWGHDSDE
                     RLPFPTNLSDARGNSVVQMQRNVHAGCYRDPHAAPGSAAYYIVGGERSITNQYLLAIN
                     AACRSIYLENQALPVPEIAYALEDALKRGVHVVLLVPGEPEKYVGLWRQRPERKPFFE
                     RLEALGRYEHFTLAGIAGRTQTGGRKYVYVHAKIMLVDDAWATIGSCNLHANSLFGHS
                     EMNAAVWDRDVVRALRRQLLLEHLGQDTEHLDDRLAMQLYQRIARENAARREAGDVEW
                     QGLACSLNPATYGGSREH"
     gene            complement(2971..4002)
                     /locus_tag="VKJ77_25310"
     CDS             complement(2971..4002)
                     /locus_tag="VKJ77_25310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016448772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntG family PLP-dependent aldolase"
                     /protein_id="HMC48661.1"
                     /translation="MTGMIDLRSDTVTRPTDAMWDAMRDASLGDDTLEGDATVQALEQ
                     EAAVLLGKEAALFVCSGTMGNVIATLVHASRGGEAVLDQHAHMANSEGGGVSRLAGLF
                     CRTIASHRGEMDLDLLSDNVRGGYSRYGEPTAMVAIETSHNAAGGCVQGLDYLGRVAG
                     IARERGAAVHLDGARLFNAALALEVDAREIALHGDSVTFCLSKGLSAPMGSMLLGSRE
                     FIEQARTLRRTIGGGLRQAGIMAAAGLVALRTMPAKLAEDHRRTMLLWERLQNNARVE
                     TDRVAPQTNILRLAVPNGRAEDYVQWLATHGVAVRASGGQAMRLVVHRHIDDAAIDAV
                     SDAFEALPV"
     gene            complement(3999..5282)
                     /locus_tag="VKJ77_25315"
     CDS             complement(3999..5282)
                     /locus_tag="VKJ77_25315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007882175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HMC48662.1"
                     /translation="MRSQHGRRKIALPLQMLLGLVLGCAVGFLFPHFAATLAPVGTAF
                     VQAIKMIVVPLVFTAITLGIYQMGNQTRSLGRVSAISLIYFFVATVISIFIGLGLNAL
                     FHPGLGANLAEAAKPGKVIAASVDWTKFFLDMIPSNIVAAMSGSNLLPVLFFAVLLGL
                     ALASVGSRAKPLIDVLDALMAAIFKVTDWIISLSPIAIFAIISWLFATQGIGTLLSLV
                     KLVGVMYLGLALLVVIFSIVLKAIGEKPWQVTRQISEPVLLAFATRSSEASLPLHMEK
                     LVKMGVPKAVASVVLPLGYAFNRDGSIMYFALAVGFLADAYRIPLDWHTLLSIVIVTT
                     LASKGSANVPSGGLVAVAMVLTTIGVPVEALAIIAGVDAFLDMGRTAINVYSNTVAVK
                     LVMKLAHVAYEQPASETEPEPTSSQHATGAPRGLA"
     gene            complement(5349..6026)
                     /locus_tag="VKJ77_25320"
     CDS             complement(5349..6026)
                     /locus_tag="VKJ77_25320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007882182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC48663.1"
                     /translation="MNQTETSEIPEPYASLRALIVDGSLRPGEALSERSLAERLQVGR
                     TPIREAVKWLARDGLLEIVPMRGTFVREMSVADLREIHEMRLALEGMAAFLAARHGPG
                     ASLDDAAAGLQALVAGVDAGRALDVDEAQSIGWAFHDAMFECADNGRLRQTYRNLRDQ
                     SGLALRRVERYSVERTKQAVLEHLAIYAAIQAGDAEGARGLVYGHLERAMQIRLKFLA
                     HTGEERT"
     gene            complement(6200..>6844)
                     /locus_tag="VKJ77_25325"
     CDS             complement(6200..>6844)
                     /locus_tag="VKJ77_25325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009856777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48664.1"
                     /translation="LGDPSAGLTGTVRVGTPEGFGTYFLAPRIAKITAMHPDLEIELV
                     ANPRMFSLSKREADIAVTMTRPSQGRVHAHKLNDYSLGVYASPQYLDTHAPITTFQDI
                     FNHPWIGYVEDLMWSAELDYLSQISTSLTPSVRISNVISQAAAVGGGAGIGVLPCFIA
                     RIDPTLVRILPDEISLSRSYWLVTHADSHDVARVKLIADFIRAECSASGLFWVG"
BASE COUNT         1414 a         2058 c         2039 g         1333 t
ORIGIN      
        1 cggctcgaaa acatggcgga cccgggggcc gcacgcaagc ccaggcgtgc accgatcttc
       61 aggccgatat tgtcgagcgt gagatgcccg acggactcat cctcgggcgc ccccgcgttt
      121 gcgtgagcgg tccgcgtcaa atcattcgtg tcatccgctg tcgcatcctc aaacttgtag
      181 ggttcgaagt tctcgaacag gaaacttcgt acagcttggc tcggaacgat ggagccggct
      241 tcgaacaaga gcgccccatc gacactaacg ataggccaca cgagaggttc gccaaccgga
      301 acgtcgttgg gcgatagacg gctggacgct gaaggtgttg ataaaacagg aacgtcgtcg
      361 gtcatagtct gggcggggag ggtcgaagca gcgaccatcg tctaacgtgt cggtcattga
      421 gtcaagggca cgcgtcgctt gcgttggact tgcgccgggc ttgggaacgt cgaagatccg
      481 tgctttctgc gtaatctcct gatgcgttgt gtcgcgtaca tcaccataca gtcaacccgg
      541 cccgcacatg accggccgat gaagaaccgc ctgcacgtca tgaacatccg ggatcgatac
      601 gcttgagcat gatccgaccc tctcgcatgc tgtcgtgcag agtcggtttc tcaggctcga
      661 tttctcaggc gaccgcgaaa gtctatcgct ggatttggtt gttgctggat ttggcttgtc
      721 ccttctcgtt cagggcgata ctatttgttc catgaacaag ttcctcgtca aatcgattat
      781 taccgccgct accgtatcgg cggaatagct ctcgacttga cagttcgcaa gcaacccgcc
      841 cagaaggcgg gtttttgctt tctgggcttc tatctgagga cctggaaatc atgagcaaag
      901 atgagggcag ttcggacgaa gcagccgttc ttcatatggt ctgcggcaag atcgcatcgg
      961 gaaaatcaac gctgacgaaa cgcttggcaa gcacggagaa tgccgtggtc atcagcgagg
     1021 atgtttggat ggcgcatctc tatccaggag aaatccgcac gctggatgac tatgtacgtt
     1081 gctcggggcg catcaggcgg gcgctctctg accacgtcca ggcactcctg tccgccggga
     1141 tgtctgtgat cctcgatttc cccttcaata ccatcaacag ccgtgcatgg gggcgcgagt
     1201 tatttgtcgg cgccggcgtg ggacaccgac ttcactacct cgacgtcagt gatgaaattt
     1261 gcaagactcg gctcagggct cggaacgcct cgggcgagca cccgttcgaa acgaccgatg
     1321 cccagttcga ccagataacg cagtactttg tcccgccttc gacaacagaa ggttttcaaa
     1381 tcgtgttgca cgcttccacg ttgtaagccg ccttcaacac gtcgcgtgag agcaccacgg
     1441 catcgtaggt cgtgtaccgc gtctctcatt tccggtatcg tgttctcccc aattccaaca
     1501 ttgccgactg cgcggacaag gagcgcctga tggatcagca tgacacgcgt gcaaccactg
     1561 aaaccggaca acacattccg ttcattgcgc acggatccta tccgaggcgg gaagggaatc
     1621 gggtccggcc tttggttgat agcggccccg ctttccgccg catttgcgaa gccgtggagc
     1681 aggcgcagca cagcgtctgg atcacggtca ctttcgtggc cacggacttc cagatgccgg
     1741 acggccgcgg ctcaatcttc gatgtcctgg accgtgcggt cgaacgaggc gtggacgtcc
     1801 gtgtgatgtt ctggcggccc aaccccgaga gcagcggata cgggcagacg ttcgccggca
     1861 cgagcgcgga cttcgatctg cttgccgcac gcggctcgcg ttttcttgca cgatgggacc
     1921 gtgctcctct cgcctattgt catcatcaga aaagctggct gatcgacgct gggcggtcat
     1981 cggagacggc atttgtcggc gggatcaatc caacttttgc agtcgttgaa ccgggacaca
     2041 tgggtgaggg gcaacgtcac gacatctatg tcgagatcac gggtccgtcc gctagcgacg
     2101 tgcatcacaa tttcgtccag cgatggaacg aggccagcga gcgggacatg gcattggggg
     2161 tatggggtca tgacagcgat gagcgtttgc ccttcccaac gaacctatcc gatgcacggg
     2221 gcaacagcgt cgtccagatg caacgcaacg tgcacgcggg ttgttatcgc gaccctcatg
     2281 ctgcgcccgg aagtgccgcg tattacatcg tcggcggcga gcggtcgatc accaatcaat
     2341 acttgctggc gatcaacgcg gcctgccgct ctatctatct ggaaaatcag gcgctgcctg
     2401 taccggagat tgcgtatgcg ctagaggacg cgctcaaacg aggcgtgcac gtcgtccttc
     2461 ttgtaccggg cgaaccggag aaatacgtgg gcctatggcg acaacgtcct gagcgcaagc
     2521 cgtttttcga gcggctggaa gcgctcggcc gatacgagca tttcacgctg gcgggcattg
     2581 ccgggcgaac gcaaaccggt ggccggaaat acgtctacgt tcacgctaaa atcatgctgg
     2641 tcgacgacgc gtgggcgacg atcggctcgt gcaacctgca tgcaaattcc ctgttcggcc
     2701 acagcgagat gaacgcggcg gtgtgggacc gtgacgtggt gcgagcgctg cgccgtcagc
     2761 ttctacttga acatctgggg caggatactg agcatctgga cgaccggtta gcgatgcagc
     2821 tttaccaacg tatcgcccgc gaaaatgctg cccgaaggga ggccggcgat gtcgagtggc
     2881 aaggtcttgc atgcagcctg aatcccgcga cgtatggcgg atcgcgggaa cattagatga
     2941 cgtaagcgcc gttcttctcg atcaaaaata tcaaaccggc agcgcctcga acgcgtcgct
     3001 cactgcatcg atagctgcat cgtcgatatg ccggtgaacc accagacgca tcgcttggcc
     3061 gccgctcgcc cgcaccgcaa cgccatgagt cgcgagccat tgcacatagt cctccgcgcg
     3121 gccattgggc acggccagcc gcaagatatt ggtttgcggc gccactcggt cagtctctac
     3181 gcgcgcgttg ttctgcagcc tttcccaaag cagcatcgtg cgccgatgat cctcggcaag
     3241 tttcgcgggc atcgtccgta acgcgaccag gccggcggca gccatgatgc ccgcttgcct
     3301 tagcccgccg ccaatcgtcc gacgcagagt cctggcctgt tcgataaatt cacgcgagcc
     3361 cagcaacatt gaacccatcg gagcgctcag tcccttcgac aagcaaaacg tgacgctgtc
     3421 gccatgcagt gcaatctcgc gggcatcgac ctccagcgcg agcgccgcgt tgaacagacg
     3481 tgcgccatcc agatgaacgg cagcgcctcg ctcacgtgca atgcctgcta cgcggcccag
     3541 gtagtcgagc ccttgaacac aaccgcccgc ggcgttatgg ctcgtctcga tggcaaccat
     3601 tgccgttggt tcgccgtagc gtgaatagcc gccgcgaacg ttatcgctca gaaggtccag
     3661 gtccatctcc ccacgatgcg aggcaatcgt gcgacagaac aagcccgcaa gccgcgagac
     3721 gccgccgcct tccgagttgg ccatgtgcgc gtgctggtcg aggaccgctt cgccgccgcg
     3781 gctcgcatga acgagcgtcg cgatgacatt gcccatcgtg ccgctgcata cgaagagcgc
     3841 ggcctcttta cccaacaaca ccgcggcttc ctgttccagc gcctggacgg ttgcgtcgcc
     3901 ctccagcgtg tcgtcgccga gcgacgcatc gcgcattgcg tcccacatgg cgtcagtggg
     3961 gcgcgtcacg gtatcgctgc gcagatctat catgccggtc atgcaagccc cctcggcgca
     4021 cccgtcgcat gttgcgatga agttggctcc ggttcagtct cgctcgccgg ttgctcataa
     4081 gcgacgtgcg ccagcttcat caccagtttg acggccaccg tgttgctgta gacgttgatc
     4141 gccgtgcggc ccatgtcgag aaacgcgtcg acgcccgcaa tgatcgccag tgcttctact
     4201 ggaacgccga tcgtagtcag caccatcgcg accgccacga ggccgcctga gggcacgttt
     4261 gcgctgccct tgctggcaag cgtggtgacg atcacgatcg acagcagcgt gtgccagtcg
     4321 agcggaatgc gatacgcgtc cgccagaaag cccaccgcga gcgcaaagta catgatcgag
     4381 ccgtcgcgat tgaatgcata accgagcggc agcaccacgg atgccacggc tttcggcacg
     4441 cccatcttga ccagcttctc catatgcagc ggcaggctcg cttccgacga gcgcgtggcg
     4501 aacgccagca gcaccggctc gctgatctgc cgcgtcacct gccacggctt ttctccgatc
     4561 gccttcagga cgatcgagaa gatcacgaca agcagcgcaa ggccgagata catcacccca
     4621 accagcttga cgagcgacag cagcgttccg atcccctggg tggcgaagag ccacgagatg
     4681 atcgcgaaga ttgcgatggg cgagagcgag atgatccagt ccgttacttt gaaaatcgca
     4741 gccatcaacg catccagcac gtcaatcagc ggcttcgcgc gactaccgac tgaggccagc
     4801 gcaagcccga gaagcaccgc gaagaacagc accggaagaa gattactacc cgacatggcc
     4861 gccacgatgt tgctcgggat catgtcgagg aagaacttgg tccagtcgac gcttgcagca
     4921 atgactttgc cgggcttggc tgcttcggcc aagttcgcgc ccaggcccgg atggaacagc
     4981 gcattgagcc cgagaccgat gaagatggag atcactgtcg cgacaaagaa gtagataagg
     5041 ctgatcgccg atacccgccc gagcgagcgg gtctgattgc ccatctggta gatcccgagg
     5101 gtgatcgcgg tgaacacgag cggcacgacg atcatcttga tcgcctgcac gaacgcagtg
     5161 ccgaccggcg caagcgtagc ggcgaaatgc ggaaacagaa agccgacggc acatccgagg
     5221 acgagcccga ggagcatctg caaaggcaag gctatctttc tacgaccgtg ttgcgaccgc
     5281 atgactattc tcctggggca ggtgttgaat gatgtgagtg acttgagcgg cggcgaggac
     5341 gaggacagtt aggtccgctc ttctcccgtg tgcgcaagaa acttcaggcg aatctgcatt
     5401 gcgcgttcaa ggtggccata gacaagtccg cgtgcgcctt cagcgtcgcc ggcttgaatt
     5461 gccgcataga ttgccaagtg ctcgagcacc gcctgtttcg tccgttcgac gctgtaacgt
     5521 tcaacgcgcc gcaacgcgag gccgctctga tcgcgcaggt ttcggtaggt ctgccgcaag
     5581 cgtccgttgt cggcgcattc gaacatggcg tcgtggaatg cccagccaat gctttgcgcc
     5641 tcatcgacgt ccagcgcgcg gccggcatcc acgcctgcta ccagcgcttg cagtcccgct
     5701 gccgcgtcgt caagcgaagc gccggggcca tggcgggctg caagaaacgc cgccatcccc
     5761 tctagcgcaa gacgcatttc gtggatttcg cgcaagtcag ccaccgacat ttcacgcacg
     5821 aacgtacctc gcatcggcac gatttcgagc aggccgtcgc gcgcgagcca tttgacggcc
     5881 tcgcgaattg gcgttcgacc gacctgtaag cgctcggcga ggctgcgttc ggaaagtgct
     5941 tcgccagggc gaagcgatcc atcgacgatc aacgcgcgaa ggctcgcgta aggttcgggg
     6001 atttcactgg tttctgtctg gttcatgact ggtataccag catggaaaaa ataagctggc
     6061 aagatttttt gcagatgcca gcgtcgcgcg gcgtggcaac gagcgacgta tccgattggg
     6121 aagttttaga ttttcaggct tgctgccgga tcgcttgaag gagcacatca aggcggactg
     6181 cgagcggccg aagatggcgt tatcccaccc agaacaatcc ggatgcgctg cattctgcgc
     6241 gaatgaaatc cgctatgagc ttgacgcgcg ctacatcgtg ggagtccgca tgcgtgacca
     6301 gccagtagga gcggctgagc gaaatttcgt cggggagaat acgaacgagg gtgggatcga
     6361 tgcgcgcgat aaagcacggc aacacaccga tccccgcgcc gccgccaact gctgccgcct
     6421 gactaatcac attcgaaata cgcacggacg gcgtgagcga cgtggagatc tgggacaggt
     6481 aatcgagctc cgcgctccac atcaaatctt cgacgtagcc aatccacgga tgattgaaga
     6541 tatcctgaaa cgtggtgatg ggcgcatgcg tatcgagata ctgaggcgat gcataaaccc
     6601 caagggaata gtcgttgagc ttgtgcgcat gaactcgccc ctgacttggg cgcgtcatgg
     6661 ttactgctat atcggcttcg cgcttggaca agctgaacat gcgcggattg gcgaccagtt
     6721 ctatctccag gtcgggatgc atggccgtga tcttcgcaat cctcggtgca agaaaatagg
     6781 tcccgaatcc ttcgggtgtg ccgactctta ccgtcccggt caggccggcc gaaggatcac
     6841 ccaa
//
LOCUS       DATGBK010001796         5889 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_160154, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001796 DATGBK010000000
VERSION     DATGBK010001796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5889
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160154"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..419
                     /locus_tag="VKJ77_25330"
                     /pseudo
     CDS             1..419
                     /locus_tag="VKJ77_25330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018418657.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            655..2043
                     /locus_tag="VKJ77_25335"
     CDS             655..2043
                     /locus_tag="VKJ77_25335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HMC48665.1"
                     /translation="MNEDARTLFYVGEKVAASLHARLEERAWRVEMIEPGDHVWSTHR
                     FDCASAGLLDFSTCQRPLDFPALHGLLSNSQVGWVAMCHPENIEDAVVLRLIRDYFFT
                     YVTQPTSSDRIADAVDRAYGMASLHESTLKDERDGQAEGEMVGSCDAMLALFHSIQKV
                     AMTDAPVFISGESGTGKELTAVAIHERSSRRDQPFVAINCGAIPAHLLQSELFGYERG
                     AFTGADQRKIGRVEAADRGTLFLDEIGDLPLESQASLLRFLQERTVERLGGHGPTPVD
                     VRIISATHVEMKTAITEGRFRTDLYHRLRVLQIDEPPLRARGKDIELLAKHMLERFKK
                     DAGRRVRGFAPDAIAAIHNYGWPGNVRELINRVRRAIVMSDGRHISALDLELGGYVEI
                     APTSLARAREAAERQAIELALLRHRGRLGDAAQELGISRVTLYRLLTAHGLRVATIHA
                     EPVEEHLSRPTK"
     gene            complement(2471..3044)
                     /locus_tag="VKJ77_25340"
                     /pseudo
     CDS             complement(2471..3044)
                     /locus_tag="VKJ77_25340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427209.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
     gene            3862..>5889
                     /locus_tag="VKJ77_25345"
     CDS             3862..>5889
                     /locus_tag="VKJ77_25345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006490792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC48666.1"
                     /translation="MLGLVRIALRRPYTFVVLAILILIIGPLSAIRTPTDIFPDIRIP
                     VISVVWQYTGLPPDQMVGRITSPFERSLTTTVNDIQHIEAESVNGFGIIKIFFQPGVN
                     ISNANAQVTAVSQTQLRQLPPGTTPPLILNYNASTVPIIQLALSGKGLTEQNLGDLGL
                     NQLRPALVTVAGASIPYPFGGKSRQIQIDIDPTALQARGLSAQDVANALAAQNLLTPI
                     GTEKIGDHEYTLQLNNAPFALKALGDLPIKAVNGTTVYIHDVANVRDGSPPQTNIVHV
                     DGKRSVLMSVLKNGSVSTLGIIAGIKQHVLDAKASLPDALQIAPIGDQSLFVRAAISG
                     VAREGVIAAALTSLMILLFLGSWRSTVIIATSIPLAILASIATLSALGETLNIMTLGG
                     LALAVGILVDDATVTIENINWHLEQGKQVEEAILDGAAQIVTPAFVALLCICIVFVPM
                     FFLDGVARFLFVPMAEAVIFAMVASFILSRTLVPTMAKYLLHPHNLDEDAHEKKRPGP
                     LGRFQQGFERRFEKIRTGYHGLLELALNHRAPFVSCFLGFVLISFALVPLLGRNFFPD
                     VDAGQILLHVRAPVGVRVEKTAQIFADVEGSIRQIIPPVELSTVVDKIGLPVSGINLA
                     YNNTGTIGSQDGDIQIALNEDHHPSAEYVRQMREKLPRLYPGVTFSFPPADI"
BASE COUNT         1221 a         1792 c         1674 g         1202 t
ORIGIN      
        1 cactcgacac tatgctcgac gacctgacca gccagcatgc cacgcggctt tgcgaaagat
       61 tcggcgtcgg tccacagacc gctgcggtct tggtcgccgt agcggacgac cacctcgaac
      121 gcctgaaaag cgaagccgcg ctagcggcac tctgaggcac aagtcctctg caggcgtcat
      181 ccggcaaaac gatccggcat cgtttgaatt gaggcggaga tcgatctgca aataacgcgc
      241 tatggacgat agcgatggtg cgaatgcgca gcgacctgcg tacccgggcc tacgttgatc
      301 gtcggacgaa ggagggaatg tcgaacaagg aaatccatcg ctgcctgaag agctatatcg
      361 cccgggagct gtacccgctc attctggctg atctggcggc ttcaacgcgt gtcgcttgac
      421 ataggagcgt cactcagtcg ccgttgcgtg aagcgatctt aactccggag taacattctt
      481 gcgttaagga acaagaccgg acgcgacgat tgtcgccgac caggtatcac ggaaccgtca
      541 tacggataga cgcctttaaa cataggaact gccaagacac ttgcgacacg ttgtctggat
      601 ctgatccgaa acgcacgtac tggctgcatc aaatcagagc catgagagaa aaccatgaac
      661 gaggacgcta gaacgctctt ctacgttggt gaaaaagtgg ctgcatctct gcatgcgcgc
      721 ctagaggagc gcgcatggcg cgtcgaaatg atcgagccgg gcgaccacgt ttggagcaca
      781 catcgattcg actgtgcgtc ggcgggcctg ctggacttct cgacgtgtca acgacccctc
      841 gattttccgg ctcttcacgg gttgctatct aattcgcagg tcggatgggt ggcgatgtgc
      901 catcccgaga acattgaaga cgcagttgtg cttcggctga ttcgcgacta tttcttcacc
      961 tacgtcacgc agccgacgtc gagcgatcga atcgccgacg ccgtcgaccg cgcctacggc
     1021 atggcctcgt tgcacgagag cactttgaag gatgagcgcg acggccaagc cgaaggcgaa
     1081 atggttggtt cgtgcgacgc gatgctcgcg ttgttccact cgatccaaaa agttgcgatg
     1141 accgacgcgc ccgtgttcat ctctggcgag tccggaaccg gcaaagaatt gactgcagtc
     1201 gcgattcacg agcgctcctc gcggcgcgat cagcctttcg tcgccatcaa ctgcggcgct
     1261 attcctgcgc accttcttca atcggaattg ttcggctatg aacgcggcgc cttcacgggt
     1321 gccgaccagc gcaagatcgg ccgggtagaa gcggcggaca ggggcacgct gttcctcgat
     1381 gaaatcggcg acttaccgct cgaaagtcag gcaagcctgt tgcgcttcct gcaagaacgc
     1441 acggttgaac ggctcggtgg ccacggcccc actcccgtgg atgtgcgtat catctcggcg
     1501 actcacgtgg agatgaagac ggccataacc gaagggcgtt ttcggacgga cctgtatcac
     1561 cgcttacgcg tcctgcagat cgacgaaccg ccgctgcggg cccgtggcaa agacatcgaa
     1621 ctgctcgcaa agcacatgct cgagcgtttc aagaaggatg ccggtcggcg ggtgcgcggc
     1681 tttgcgcccg atgcgatcgc cgccatccac aactatggct ggccgggcaa cgtgcgcgag
     1741 cttatcaacc gcgtgcgccg agctatcgtg atgtccgacg gacgccacat cagcgcgttg
     1801 gatctcgaac tcggggggta cgttgaaatc gcgccaacgt cgctggcgcg ggcgcgcgaa
     1861 gctgcggaac ggcaggctat cgaactcgca ttgctgcgtc atcggggtcg tctcggcgat
     1921 gccgcgcagg aactcggaat ttcgcgtgta acgctatatc gattgctcac cgcacacgga
     1981 ttgcgcgtgg ctacaattca tgcggagccg gtcgaggagc acttatcgcg gccaactaag
     2041 tgaaacgtcc gtctagcagg gattgcaact gctgaccttc gaagatcggc acagggatga
     2101 acagttgtat tcatcacgaa cgcacgtgcg gtcatgtctg agttcgccgg catcgtcgag
     2161 atgcatggcg gtacagtggc tgttcgtagc attttggaac agctagcgag ttcgtagtgc
     2221 ggctaccggc ggccgcttac gccgcggtgc ctagacttac tactctaccg gcagaggaca
     2281 taaatcgggc cgccttaagg tgcttgttgt tgacgataac gtagataccg ctgaaagcat
     2341 gacgatgctg gtcgaacttt tagggcattc ggtctggacg ggtatgacgg taacctttct
     2401 ttgcacgttc gattcttggc acataggagc gcttccactt tcctcaatgt gctaaaagaa
     2461 atcacgtcag tcagcagccg gggcgcatcg cataggacgt gaggagccgg tatagcgtca
     2521 cccgagagat tcccagttcg ttcgccgcgt cgcccagacg gccacgatgg tgtagcaacg
     2581 cgcgtccgat cgtctgccgc tctgctgctt cacgcacctg gtcaagagta agccgcgccc
     2641 cctgcgcgta ggcatccaac tcgagatcat gcgcgctaat cagccgcccc tccgacatca
     2701 caagcgcgca cattgcccgg ccagccgtag ttgtgcagcg cggtgatcgc atggggcgca
     2761 aatccccaca gacgccggcg cgcgtccgtc ttaaacctgt cgagcatacg gttcgcgagc
     2821 aactcaatgt ccttgccacg cgcgcgcagc ggcggttcgt cgatctgcag cacgcacact
     2881 cggcggtaca ggtcggcacg aaaccgccct gcgatcatct cggcctgcat atcaacgtga
     2941 gttgccgaaa ggatgcgcac gtcgaccgct gtcgaaccat gtccgcccag ccggtcgatc
     3001 ttgcgttcct cgaggaaacg cagcaggctc gcctggcttt caagcgccaa ttgaatatgg
     3061 cgtttcacaa cgggcgtatc gcactgatcg ccaaccatga cgagggcacg gtcgccgtag
     3121 tcgatctcga atcggctgag gttttgcgac ccctgccgat ctgggtttga aagccgaaaa
     3181 ctaatctgcg taacggggca actagcgccc cactccggcc cctaagccag acagcatcga
     3241 cctgaatgcc taaggcctct taagcgaatg tcgtattaag cgacccgcgc cgtaaacgat
     3301 ggtaataaaa aatccacgtg ctcgtcggcc tcgcctacat agggctgcgc ttacgccggc
     3361 caaaaaccgc agaccattat tacttatggc gcgagcgctt atttgctgcc cttgatccac
     3421 tgtcgaaaat tggccagagc aggttcgatc ggccctccgg atccgccctc gcgcgctgca
     3481 gctttgtttt cctttgtgta cattgccgca ttgtcttcgc tgcagacaaa attacaggag
     3541 atcgcgatgt cctgatttca aatcgacttc ctaatggcat tcggaaagca atacgaaaga
     3601 attcagaagt ttcagcttga tgcagcggtc ttagcgctag tcgcatcaaa tatcaattga
     3661 gtgagtgacc agccggtcaa cggcccccga accaaagatc atgcggcgca tttttcaaca
     3721 atccttcttg cgcgaggacg gaaatgatcc tacccggcgc attgcccggg ccacgcggac
     3781 gaccgcggcc ggccctcgcc gactgttgcc cctggcagca tcaaagcgca gttcagttca
     3841 accccaagtc ctggaactct catgctcggc ctagtacgta tcgctcttcg acggccatac
     3901 acttttgtcg tcctggcgat cctcatttta atcatcgggc cgctctccgc gatcagaacg
     3961 ccgaccgata tcttccccga tatccgcatt cccgtgatca gcgtcgtgtg gcaatacacg
     4021 ggcttgccgc cggaccagat ggtgggacga atcacttcgc cgttcgagcg ttcgctgacc
     4081 acgacggtga acgacatcca gcacatcgag gctgaatcgg taaatggctt cggcattatc
     4141 aagatcttct tccagccggg cgtgaacatc agtaacgcga acgcccaggt gaccgccgtc
     4201 tcgcagacgc aattgcgtca attgccaccg ggcaccacgc cgccgctgat cctgaactac
     4261 aacgcgtcga cggtgccaat catccagctc gccctgtcag gcaaaggtct caccgaacaa
     4321 aacctcggcg accttgggct gaaccagttg cgtccggcgc tggtgacggt ggccggtgcg
     4381 tcgatcccct atccgttcgg tggcaagtcg cgccagatac agatcgacat tgacccgacg
     4441 gcattgcagg cgcgcggcct gtctgcccaa gacgtcgcca atgcgctcgc cgcgcagaac
     4501 ctgctgacgc ccattggtac ggaaaagatc ggcgatcatg aatacacgct gcagttgaac
     4561 aacgcgcctt ttgcgctcaa agcgctcggc gacctaccaa tcaaggcagt gaacggcacc
     4621 acggtttata tccacgatgt cgccaatgtc cgcgacggca gtccgccgca aacgaatatc
     4681 gtgcatgtgg acggcaagcg ttcggtcctc atgtcggtac tgaagaacgg ctcggtgtcc
     4741 acgctcggca tcatcgccgg catcaagcag cacgtgctcg atgccaaggc ttcattgccc
     4801 gacgcactgc aaattgcacc gatcggcgac cagtcgctat tcgtgcgcgc ggccatcagc
     4861 ggcgtggctc gcgaaggcgt gatcgcggcc gcgctgacca gcctcatgat cctgttgttc
     4921 ctcggcagct ggcgttcgac cgtcatcatt gcgacctcga ttccactcgc catcctcgcc
     4981 tcgatagcga ccctgtctgc gctcggcgag acgctcaaca tcatgacgct cggcggcctt
     5041 gcgctcgcgg tggggattct cgtcgacgac gcaaccgtca ccatcgaaaa tatcaactgg
     5101 catctggagc aaggcaagca agtagaagag gccatcctcg atggcgccgc gcagatcgtc
     5161 acgccggcgt tcgtggcgct gctctgtatt tgcattgtgt tcgtgccaat gtttttcctc
     5221 gacggcgtcg cgcgtttcct cttcgtgccg atggccgagg ccgtgatctt tgcgatggtt
     5281 gcgtcgttca tcctgtcacg aacgctcgtt cccacgatgg cgaagtacct gctgcatccg
     5341 cacaatctcg atgaagatgc gcatgaaaag aaacgccccg gaccactcgg acgctttcag
     5401 caaggcttcg aacggcgttt cgaaaaaatt cgcaccggct atcacggcct gctggaattg
     5461 gcgctgaacc atcgcgcgcc cttcgtcagt tgcttcctcg gtttcgtact gatctcgttc
     5521 gcgctggtgc cgttgctcgg ccgcaatttc ttcccggacg tggatgccgg gcagatcctg
     5581 ttgcacgtgc gcgcgccggt cggtgtacgc gtcgagaaga ccgcacagat tttcgcggat
     5641 gtggaagggt cgattcgcca gatcattcca cccgttgaac tctccactgt ggtcgacaaa
     5701 attggcctgc cggtcagcgg tatcaatctc gcctataaca acaccgggac gatcggctcg
     5761 caggacggcg acatccagat cgcgttgaat gaagatcatc acccgagcgc ggagtacgtg
     5821 cggcagatgc gagagaagtt gccgcgcctt tatccgggcg tgacgttctc gttcccaccg
     5881 gcggacatc
//
LOCUS       DATGBK010001797         3482 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_68252, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001797 DATGBK010000000
VERSION     DATGBK010001797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68252"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..986)
                     /locus_tag="VKJ77_25350"
     CDS             complement(<1..986)
                     /locus_tag="VKJ77_25350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009890352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC48667.1"
                     /translation="MWSYILKRILLMIPTLLGVLTLTFAVIQFVPGGPVEQAVHELRR
                     GEQGTSFGMRMHTGVDAQQVAQLRALYGFDKPPLERYWLMLGRFARFDLGDSYFRHQS
                     VWSLIVSKLPVSISIGVWTFFLTYLISVPLGIAKAVRNGSTFDFTTSLLVLVGFAIPG
                     FVLGVLLLVLFGGGSFWQLFPLRNLTSDNWATLSLGGKIADYLWHITLPIIASVVGSF
                     AVITMLTKNAFLDEIRKQYVLTARAKGLSERRVLWKHVFRNALLPLIVGFPGAFIGAF
                     FTGSLLIETLFSLDGLGLLSYESVVRRDYPVVLGTLYLFTLIGLATKLISDL"
     gene            complement(1022..2923)
                     /locus_tag="VKJ77_25355"
     CDS             complement(1022..2923)
                     /locus_tag="VKJ77_25355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HMC48668.1"
                     /translation="MATGSRRVLGLLFGSLLIGFGGLAVPKAALAVYAIAQYGEPKYP
                     ADFKHFDYVNPDASRGGTLVLANPNRLTSFDKFNPFTQRGNPAPGLGFMFESLTTGSL
                     DEVSTAYGLLADDISIAPDGLSATFHINAKARFSNGDPVTAEDVKYSFDTLKSPQAAA
                     QYAVYFGQISRAVILDPLTIRFDFKERTREMPFIAGAIPVFSHKWGMKPDGSHVPFDQ
                     LAFQKPIASGPYLIEQYDNGRTITFKRDPAYWGNALPVRVGTFNFERITYKLYSDGVA
                     RLEAFKAGEYDALVEYVARNWVRRDIGKRFDNGELIKREFRNHNGTGMQGFFINLRRP
                     IFQDVRVRQALDLAFDFQWLNRQLFFNQYTRTDSFFANTDLQATGKPSAGELAILSPL
                     RAQLDPAVFGDMVKQPDTDPPGSLRANLIRARKLLADAGWLYKDGALRNAKGQPFVFE
                     ILDDSGSGSSMEPVVATYQRNLQKLGIVANFRTVDFALIQKRLDAFDFDMTSLRMPDV
                     QIPGTEQDSRFGSKSADQQGSDNYNGVKSPAVDSIVHTLLGAQTREQLLDATHALDRV
                     LMHGYYVIPHWYTASHRVAYRNTLAYPATLPLYYTAEDWITSTWWFNPPAAASTPAST
                     PASAAAAAK"
     gene            3153..>3482
                     /locus_tag="VKJ77_25360"
     CDS             3153..>3482
                     /locus_tag="VKJ77_25360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006026016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC48669.1"
                     /translation="MGFLAGKRILLTGLLSNRSIAYGIAAACKREGAELAFTYVGDRF
                     KDRITEFATEFGSDLVFPCDVGSDEEIDALFVSLKERWDTLDGLVHSIGFAPREAIAG
                     NFLDGMTR"
BASE COUNT          749 a         1014 c         1065 g          654 t
ORIGIN      
        1 cagaggtcgg agatcagctt ggtggcaagt ccgatcagcg tgaacagata cagcgtaccg
       61 agcacgaccg gataatcgcg ccgcacgacg gactcgtacg aaagcaggcc gaggccatcg
      121 agtgaaaaaa gcgtttctat cagcaaactg cccgtgaaga acgccccgat gaacgcgccc
      181 ggaaagccca cgatcagcgg caacaacgcg ttgcgaaaca cgtgcttcca cagcaccctt
      241 ctctccgaca accccttggc cctggccgtc agcacatatt gtttgcggat ttcatcgagg
      301 aaggcgttct tggtcagcat ggtgatgacc gcgaagctgc cgaccaccga agcaatgatg
      361 ggcaacgtga tatgccacaa gtagtcggct atcttgccgc cgaggctcaa cgttgcccag
      421 ttgtccgacg taaggttgcg cagcggaaac agttgccaga acgacccgcc gccgaacagc
      481 acaaggagca gcacgccaag cacgaagcct ggaatggcga agccgacgag cacgagcagg
      541 ctggtggtga aatcgaaggt ggaaccgttg cgcaccgcct tcgcgatccc gagcggcacc
      601 gatatcaggt aggtcagaaa gaacgtccac acgccaatgc tgatcgacac cggcagcttc
      661 gacacaatca gcgaccacac gctttgatga cgaaaatagc tatcgccgag atcgaaacgg
      721 gcgaagcgtc cgagcatcag ccagtagcgt tcgagcggcg gtttatcgaa gccgtagagc
      781 gcgcggagtt gcgcgacttg ctgcgcgtcc acgcccgtgt gcatgcgcat gccgaagctc
      841 gtgccttgct cgccgcggcg taattcatgc acggcttgtt cgaccggtcc gcccggcacg
      901 aactggatca cggcgaacgt gagcgtgagg acgccgagca aggtcgggat catcagcaag
      961 atacgtttga ggatgtagct ccacatgggc gcggtccgct tgagtgagta agtgcgtgga
     1021 tttactttgc ggcggcagcg gccgacgcag gggtggacgc aggggtggac gcggcggcag
     1081 gtggattgaa ccaccatgtc gatgtgatcc agtcttcggc ggtgtaatac agcggcaagg
     1141 tcgccggata cgcaagtgtg tttcgatacg ccaccctatg cgaagccgtg taccaatgcg
     1201 ggattacata gtaaccatgc atcaggaccc ggtcgagcgc gtgggtggca tcgaggagtt
     1261 gttcgcgtgt ctgcgcgccg agcaaggtgt gcacgatcga gtccactgcc ggcgacttca
     1321 cgccgttata gttatccgag ccctgctgat ccgccgactt gctgccgaaa cgcgaatcct
     1381 gttcggtccc cggaatctgg acgtcgggca tgcgcaggct ggtcatgtcg aagtcgaagg
     1441 cgtccagccg cttctggatc aatgcaaagt ccaccgtacg gaaattcgcg acaatcccga
     1501 gcttttgcaa gttgcgctga tacgtggcaa cgaccggttc catcgacgac ccgctgcccg
     1561 agtcgtcaag aatctcgaac acaaacggct ggcccttcgc gttgcgcaac gcgccgtcct
     1621 tatacaacca gcccgcatcg gccagcagct tgcgcgctct gatcaggttc gcgcgcagtg
     1681 aaccgggtgg atccgtgtcc ggctgcttca ccatgtcgcc gaacacggcg ggatcgagct
     1741 gcgcgcgtaa cggcgagagg atcgcgagtt cgcccgcgct cggcttgccc gtcgcttgca
     1801 gatcggtgtt tgcaaagaag ctgtcggtgc gcgtgtactg gttgaaaaac agttgccggt
     1861 tcagccactg gaagtcgaac gcaagatcga gcgcctgacg cacgcgcacg tcctggaaaa
     1921 tcggccggcg caggttgatg aaaaagccct gcatgcccgt gccgttgtga ttgcgaaatt
     1981 cgcgcttgat cagctcgccg ttgtcaaagc gtttgccgat gtcgcgacgc acccagttgc
     2041 gcgcaacata ttcgaccagc gcgtcgtact cgccggcctt gaacgcctca agccgcgcaa
     2101 cgccatccga atagagcttg tacgtaatgc gttcgaagtt gaacgttccc acccgcaccg
     2161 gcaacgcatt gccccaatat gccgggtcgc gcttgaaggt gatggtacgg ccgttgtcat
     2221 attgttcgat gagatacgga ccgcttgcta tcggcttctg aaacgcgagt tgatcgaagg
     2281 gaacgtggct gccgtcgggc ttcatgcccc acttgtgcga aaacaccgga atcgcgcccg
     2341 cgataaacgg catctcgcgc gtgcgctctt tgaagtcgaa gcgaatggtc agcggatcaa
     2401 gaatgaccgc gcgcgaaatc tgcccgaaat acaccgcata ttgcgccgcg gcctgcgggc
     2461 ttttcagcgt atcgaacgag tacttgacgt cttcggcggt gacgggatcg ccattcgaaa
     2521 agcgcgcctt ggcgttgatg tggaacgtgg cggaaaggcc gtcgggcgcg atgctgatgt
     2581 cgtcggcgag aagaccgtaa gccgtcgata cctcgtcaag actgccggtt gtcaaactct
     2641 cgaacataaa accgagcccg ggcgcggggt tgccgcgctg cgtgaacggg ttgaatttat
     2701 cgaagctagt gagccggttc gggttcgcca gaaccagcgt gccgccacgg gacgcatccg
     2761 gattgacgta gtcgaagtgc ttgaaatcgg cgggatattt cggctcgcca tactgagcga
     2821 tggcgtatac ggccagtgcc gctttcggta ccgcgagccc gccgaaaccg atcagcaagc
     2881 tgccaaacag aagaccgagg acccgtcggg agccagtcgc catgagcgcc tttataagta
     2941 ccagtgaaac gatgatcgga aaaacagcct gccgttcaga gcctgctccg ggcgcgctcg
     3001 cggcagcccc caagcacagc acgccttaag cgacatgagg cgatgtgaga gaattctact
     3061 aaaaccactg tcccgggcat tgtaacgacg tgcgcaaggc ttgcgcgcgc tcagtccgcg
     3121 catgtgcgat atcgacttct taaggagcat tcatgggatt tctcgctgga aaacggattc
     3181 tgctgacggg cttgttgtcg aaccgctcga tcgcctatgg catcgcggcg gcttgcaagc
     3241 gcgaaggcgc cgaactcgcc ttcacttatg taggggaccg tttcaaggac cgcattaccg
     3301 agtttgcgac cgaattcggc agcgatctcg tatttccgtg cgacgtgggt agcgacgagg
     3361 aaatcgacgc cctcttcgtc tcgctgaaag aacgctggga cacgctcgac ggtctcgtgc
     3421 attccatcgg ctttgcgccg cgcgaagcga ttgcgggcaa tttcctcgac ggcatgacgc
     3481 gc
//
LOCUS       DATGBK010001798         1678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_252765, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001798 DATGBK010000000
VERSION     DATGBK010001798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252765"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            153..344
                     /locus_tag="VKJ77_25365"
     CDS             153..344
                     /locus_tag="VKJ77_25365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48670.1"
                     /translation="MMNLVNSLSGGDGDLWYLWVAFDITFLVLAIEIAITVGSNRRQR
                     RRGRVAQTHTRTSTLTEKP"
     gene            341..826
                     /gene="ccmE"
                     /locus_tag="VKJ77_25370"
     CDS             341..826
                     /gene="ccmE"
                     /locus_tag="VKJ77_25370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013742915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017003 - protein-heme linkage [Evidence
                     IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HMC48671.1"
                     /translation="MKGRTRRACGVAAGLVALGGAAALVLNAFNANVMFFVTPSQLAS
                     GSVKHAARLRIGGLVERGSVERDAGGLTVRFMITDTAREIPVLYRGALPDLFGEGKGV
                     VAQGRLLPDGVFLADQVLAKHDEKYMPPDAAEAIKRARSTLRVSDSAADTALVPAGVT
                     R"
     gene            823..>1678
                     /gene="ccsA"
                     /locus_tag="VKJ77_25375"
     CDS             823..>1678
                     /gene="ccsA"
                     /locus_tag="VKJ77_25375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012762784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HMC48672.1"
                     /translation="MIPELGQLALIVALLLAITTGVLPLVGATRGITSWTRSAWALAR
                     AQCGFVTMAFGCLTVSFIDNDFSVAYVASNSNSMLPLIYRFAAVWGGHEGSLLLWTLL
                     LTWWMAAVSVFSKQLPMPMVARVLGVMSWINAGFLLFMLWTSNPFTRLLPPAMDGRDL
                     NPLLQDPGMVSHPPILYMGYVGFAVAFSFAVSALLSGELDAAWARWSRPWTTAAWTFL
                     TLGIMLGSGWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTDKRGSFRAWTV
                     LLAICAFSL"
BASE COUNT          262 a          486 c          553 g          377 t
ORIGIN      
        1 catcagggtg catcgctttc gttcggcagt ggggtatcga tggacagctc aatgctcgcc
       61 ggcctcgtcg taatgacgct ggcattctgg tgttacgcga ttgccattgt gctcgtacgg
      121 gtgcggcgga ttatcgatga acgagaggca gcatgatgaa cctcgtgaac agtttgagcg
      181 gtggcgatgg cgatctctgg tacctgtggg tcgcgttcga catcaccttc ctcgtgctcg
      241 ccatcgagat cgcaataact gtcggttcga acaggcggca gcgccggcgc gggcgtgttg
      301 cccagacgca cacgcgcaca agcacattga cggagaaacc gtgaaagggc gcacgcggcg
      361 cgcgtgcggt gtcgccgccg ggcttgtggc gctcggcggc gcggcggcgc tcgtgttgaa
      421 tgcgtttaac gccaacgtga tgtttttcgt cacgccctcg caactcgctt cgggcagcgt
      481 gaaacacgca gcacgattgc gcataggcgg gttggtagag cgcggttcgg tcgagcgcga
      541 tgccggcggg ctgaccgtgc gtttcatgat caccgatacg gctcgagaga ttcccgtgct
      601 ttaccgcggg gcgctgcctg acctgttcgg cgaaggcaag ggcgtggtgg cgcagggcag
      661 gttgttgccg gacggtgtgt tcctggcgga tcaggtgctg gccaaacacg acgagaaata
      721 catgccgccg gacgccgctg aagccatcaa acgcgcgcgg tccacgttac gcgtatcgga
      781 cagtgcagcg gacacggcac ttgttcccgc cggagtcacc cgatgatccc ggaactcggc
      841 cagcttgcac tgatcgtcgc gttgctgctc gccatcacga cgggcgtgtt gccgcttgtc
      901 ggcgcgaccc gtggaataac gagctggacg cgaagcgcgt gggcgcttgc gcgagcccaa
      961 tgcggattcg tcacgatggc gttcggttgc ctgacggtct cgttcataga caacgatttc
     1021 tctgtggcgt atgtcgcatc gaattccaat tcaatgctgc cgctcatcta ccgcttcgcg
     1081 gcggtctggg gcggccatga aggttcgttg ttgctctgga ccttgctgct cacgtggtgg
     1141 atggcggcgg tatccgtatt cagcaaacag cttcccatgc caatggtcgc gcgcgtgctc
     1201 ggtgtgatga gctggatcaa cgcgggtttc ctgctgttca tgctctggac ctccaatccg
     1261 ttcacgcgtc ttttgccacc ggcaatggat ggccgcgatc tcaacccgtt gctgcaagac
     1321 ccgggcatgg tctcgcatcc ccccattctt tatatgggct atgttggctt tgcggtagcg
     1381 ttctcgtttg ctgtctcggc gttgttgtcg ggtgaacttg atgccgcctg ggcgcgctgg
     1441 tcgcgtccgt ggaccacggc cgcatggacc ttcctcacgc tgggcatcat gcttggcagc
     1501 ggctgggcgt actacgaact cggatggggc ggatggtggt tctgggaccc cgtggagaac
     1561 gcctcgttca tgccgtggct cgtcggtaca gcgctgatgc actcgctcgc cgtcaccgat
     1621 aaacgcggca gttttcgcgc gtggaccgtg ttgcttgcca tctgcgcgtt ttcgctga
//
LOCUS       DATGBK010001799         1784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_252774, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001799 DATGBK010000000
VERSION     DATGBK010001799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252774"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /locus_tag="VKJ77_25380"
     CDS             complement(<1..226)
                     /locus_tag="VKJ77_25380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004193051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[acyl-carrier-protein]--UDP-N-
                     acetylglucosamine O-acyltransferase"
                     /protein_id="HMC48673.1"
                     /translation="MSKIHPTAIIEPGAQLDESVEVGPYAIVGQHVQIGARTTIGSHS
                     VIEGHTVLGSDNRIGHYASVGGRPQDMKYKD"
     gene            complement(286..759)
                     /gene="fabZ"
                     /locus_tag="VKJ77_25385"
     CDS             complement(286..759)
                     /gene="fabZ"
                     /locus_tag="VKJ77_25385"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012400723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HMC48674.1"
                     /translation="MSTEKINLDIHKILTLLPHRYPILLVDRVLELTPHQSIKALKNV
                     TINEPYFQGHFPTRPVMPGVLILEALAQAAALLTFAEEKEPHDPETTLYYFVGIDKAR
                     FKRVVEPGDQLILNVNFERYMRGIWKFSARAEVDGAVAAEAELMCTVKNTAADTK"
     gene            complement(860..>1784)
                     /gene="lpxD"
                     /locus_tag="VKJ77_25390"
     CDS             complement(860..>1784)
                     /gene="lpxD"
                     /locus_tag="VKJ77_25390"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HMC48675.1"
                     /translation="LEKVTSPEGRNFIVTANPYAYFARVAQVFIDLATPPVEPGVHPT
                     AFIHPAAKVASSAVIGPHVSVEAGAEIGERVKLDAGVTIGRGVKLADDVHLYPHVTVY
                     HGCKLGARAIVHAGAVIGADGFGFAPDFAGDGDARTGSWVKIPQVGAVDVAQDVEIGA
                     NTTIDRGAMADTVIEEGVKIDNQVQIGHNCRIGAYTVIAGCAGIAGSTNIGRHCMIGG
                     AVGIAGHVTLADYVIVTAQSGVSKSLLKPGMYTSAFPAVNHADWNKSAAIVRNLDKLR
                     ERIKTLEAAVAAGTEADNTPDNIPDSTSGKH"
BASE COUNT          301 a          568 c          527 g          388 t
ORIGIN      
        1 cgtccttgta cttcatgtcc tgcggccggc cgccgacaga tgcgtagtgg ccgatgcggt
       61 tgtcgctgcc gaggaccgta tggccttcaa ttacgctatg cgaaccgata gtcgtgcgcg
      121 cgccaatttg cacgtgctgg ccgacgatcg cgtacggacc gacttcgacg gattcgtcga
      181 gctgcgcgcc cggctcgatg atcgcggtag ggtgaatctt gctcatgcgc cctcgcttga
      241 tgttctgttg cttggtttgc cgcgccggcg aaggcacggc tcgcgtcact tcgtgtcggc
      301 ggccgtgttc ttcacggtgc acatcaactc ggcttcggct gctactgcac cgtccacttc
      361 ggcacgtgcg ctgaatttcc agatgccgcg catgtagcgc tcgaagttca cgttcaggat
      421 cagctggtcg ccgggctcga ccacgcgctt gaagcgcgcc ttgtcgatgc ccacgaagta
      481 atacagagtc gtttccggat cgtgtggttc cttctcctcg gcaaacgtga gcagtgcggc
      541 tgcctgcgca agcgcttcga gaatcagcac gccgggcatc acgggccgtg tcgggaagtg
      601 accctgaaaa tacggctcgt tgatcgtcac gttcttcagc gctttgatgc tctgatgcgg
      661 cgtgagttcg agtacacggt cgacgagcag gatcggatac cgatgcggca gcaacgtgag
      721 aatcttgtgg atgtctagat tgattttttc ggtgctcata gtcgttctgc tcgcgcgctt
      781 cacagcgcgg gtgttgactg cgaaaccgct cgccaaaaac taacaagcgg ttccgcgtgg
      841 gatgccggtt tttaccgtct taatgcttgc ctgaagtgct gtccgggatg ttatccgggg
      901 tgttatctgc ctcagtgccc gcggctacag ccgcttcgag cgtcttgatg cgttcgcgca
      961 atttgtccag attgcgcaca atggcagcgc ttttgttcca gtcggcgtga ttcacagcgg
     1021 ggaatgcgct ggtgtacatg cccggcttca gcagcgactt cgacacgccg gactgtgccg
     1081 tgacaatcac gtagtccgcc agcgtcacgt ggcccgcaat gcccaccgct ccgccgatca
     1141 tgcagtgccg cccgatgttc gtgctgcccg caatgcccgc gcagcctgcg atcaccgtgt
     1201 aggcgccgat ccggcagtta tgcccgatct ggacctgatt atcgatcttt acgccttcct
     1261 cgatcaccgt gtcggccatt gcgccccggt cgatcgtggt gttcgcacca atctccacgt
     1321 cctgcgccac gtccacggcg ccgacttgcg ggatcttgac ccagctgccg gtgcgcgcgt
     1381 cgccgtcgcc ggcaaaatcc ggcgcaaaac caaaaccgtc cgctccgatc accgcgcctg
     1441 catgcacgat cgcgcgcgcg ccgagcttac agccatgata gacggtcacg tggggataaa
     1501 gatggacatc gtcggccagc tttacgcccc gcccgatagt cacgcccgca tccagcttca
     1561 cgcgctcgcc aatctctgcg cccgcttcca cgctcacgtg cggcccgatc acggcgctgg
     1621 acgccacctt cgcggccgga tggataaatg ccgtgggatg cacgccaggt tcgaccggcg
     1681 gtgtcgcgag gtcgatgaaa acctgcgcca cacgcgcaaa ataagcgtag ggattcgccg
     1741 tgacgataaa gttacgccct tccggcgacg tcactttctc cagg
//
LOCUS       DATGBK010001800         1636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322072, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001800 DATGBK010000000
VERSION     DATGBK010001800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322072"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..970)
                     /locus_tag="VKJ77_25395"
     CDS             complement(<1..970)
                     /locus_tag="VKJ77_25395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxygalactonokinase"
                     /protein_id="HMC48676.1"
                     /translation="MTRIDTLAETQPTFSKDANAAPALIALDWGTSSLRAYLLDAQGA
                     VLETRASSAGIMNLPKPAAEGGFDTVFDATCGAWLAGNASLPVIAAGMVGSAQGWLEA
                     PYVTTPADPAALVAGIVRVKTLKGITVHIVPGVLEDGALPNVMRGEETQIFGALASDA
                     TLDQQPHGGLIGLPGTHAKWAVVSKGRIERFYTFMTGETFGALRDHTILGRTMRATDQ
                     HDLGAFIRGVDTAKDAGHAGLLATIFSTRTLGLTGQLQPEQQADYLSGLLIGHELRGL
                     NEVLAREQADLAGKALRLIGNDALCERYRLALARFGCHDARTVAHAT"
     gene            complement(967..>1636)
                     /locus_tag="VKJ77_25400"
     CDS             complement(967..>1636)
                     /locus_tag="VKJ77_25400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007743620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC48677.1"
                     /translation="LVSSLVQARYLRQVGGGYLLGPKLIELGTIALEQMPLTAVARPH
                     LQVLAEHTHDTIHLGVRDGDDVLYIDKIPGTRGLEMRSRVGHRMPLASTGIGKAMMLD
                     LPPETWSKLLEASHRVLAKVSFKPDHQPDIDTFVQRMTRYSQGGFTFDLEENEASIRC
                     VAAPVRDASGAIVAALSVASTIPYMPSERMEELIPVVQREARAISQELGWRVPQPTTR
                     RIKR"
BASE COUNT          280 a          534 c          518 g          304 t
ORIGIN      
        1 cggtcgcgtg cgcgacggtc cgcgcatcgt ggcaaccgaa gcgcgcgagc gcgaggcgat
       61 aacgttcgca aagcgcgtcg ttaccgatca gccttaacgc cttgcccgcg agatccgctt
      121 gctcacgcgc cagcacttca ttgagaccgc gtaattcgtg gccgatcaac aggcccgaga
      181 ggtaatccgc ttgttgctcg ggctgcagtt gcccggtcag tcccagcgtg cgggtgctga
      241 aaatcgtcgc gagcaaaccc gcgtggcccg cgtctttggc ggtatcgacg ccgcgaataa
      301 acgcgcccag atcgtgctga tcggtcgcgc gcatcgtgcg cccgaggatg gtgtgatcgc
      361 gcagcgcgcc gaaggtctcg cccgtcatga aggtgtagaa ccgttcgatc cgtcccttcg
      421 atacaaccgc ccacttcgca tgcgttcccg gcaagccgat caagccgccg tgcggttgct
      481 ggtccagcgt ggcgtcgctg gcgagcgcac cgaagatctg cgtttcttcg ccgcgcatca
      541 cgttgggcaa cgcgccgtcc tcaagcacgc ccgggacgat gtgaaccgta atgcccttga
      601 gtgttttcac gcgcacgatg cccgctacca gcgcagccgg atcggcgggt gtggtgacgt
      661 acggtgcttc caaccagcct tgcgcgctgc cgaccatgcc cgcagcaatc accggaagcg
      721 acgcgttgcc ggcaagccat gcgccgcagg ttgcatcgaa tacggtgtcg aaaccgcctt
      781 cggctgcagg cttcggcaaa ttcatgatgc ccgccgacga cgcccgcgtt tccagcaccg
      841 cgccttgtgc atcgagcaga taggcgcgca gcgaactcgt gccccagtcg agtgcgatca
      901 gggccggcgc agcgtttgcg tccttggaaa acgtgggctg cgtctcggcc aatgtgtcga
      961 tccgcgtcat cgtttgatcc tgcgtgtggt gggctgcggt acgcgccagc cgagttcttg
     1021 cgagatcgca cgcgcttcgc gctgcacgac aggaatcagt tcttccatac gctccgacgg
     1081 catgtaggga atcgtgctcg ccaccgacag cgccgcgacg atcgctcctg acgcgtcacg
     1141 caccggcgcc gcgacgcagc ggatcgacgc ttcgttttcc tcgagatcga aggtgaaacc
     1201 gccttgcgaa tagcgcgtca tgcgctgcac gaaggtatcg atatcgggct ggtgatcggg
     1261 tttgaaactc acctttgcca acacgcgatg cgacgcttcc agcagcttcg accacgtctc
     1321 cggcggcagg tcgagcatca tcgccttgcc gattcccgtc gatgccagcg gcatccggtg
     1381 acctacccgt gagcgcattt cgaggccacg cgtgccggga atcttgtcga tgtagagcac
     1441 gtcgtcgccg tcacgcacgc cgaggtggat ggtgtcgtgc gtgtgttcgg cgagcacttg
     1501 cagatgcgga cgcgctaccg cggtgagcgg catttgctcg agcgcgatcg tgccgagttc
     1561 gatcagcttg gggccgagca gataaccgcc gccgacctgg cgcagatagc gcgcctgcac
     1621 cagcgagctc accagg
//
LOCUS       DATGBK010001801         3154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_230262, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001801 DATGBK010000000
VERSION     DATGBK010001801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3154
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230262"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1845
                     /locus_tag="VKJ77_25405"
     CDS             <1..1845
                     /locus_tag="VKJ77_25405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HMC48678.1"
                     /translation="SALMKKRVSRFMVSSACPSCHGKRLKPEALSVTFAGLDIGELSQ
                     MPLARVAEVLRPVARGEAPTDTTISVSAGEILSKNEMRAAVARRVASGGSEHKASPDI
                     RRTTNQSREKQVAAQRIASELLERLTTLIDLGLGYLALDRGTPTLSSGELQRLRLATQ
                     LASQLFGVIYVLDEPSAGLHPADGEALFSALQRLKAAGNSLFVVEHDLEMMRRADWLV
                     DVGPAAGTAGGQIVYSGPPAGLADIEESQTRLHLFGDYRPTPRSKRTPAHWLRLENVT
                     RNNLHDLEVAFPLGCFTTVTGVSGSGKSSLVSQALPELVTERLGRPIAAETDEERDPL
                     LDVEDIPTGGEITAGMERIRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFAETSTA
                     RRRHYDAGRFSFNVAKGRCPTCEGEGFVSVELLFMPSVYAPCSTCGGTRYNPETLEIE
                     WKGKNISDVLQMTVDTACAFFADEPQIMRALTVLKDIGLGYLRLGQPATELSGGEAQR
                     IKLATELQRAQRGETLYILDEPTTGLHSTDSDRLLIQLQGLVDSGNTVIVVEHDMRVA
                     AQSDWVIDMGPGAGEEGGKLVVSGTPEDVVKRGKASSFTSKYLKACLP"
     gene            complement(1940..3001)
                     /locus_tag="VKJ77_25410"
     CDS             complement(1940..3001)
                     /locus_tag="VKJ77_25410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013591874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HMC48679.1"
                     /translation="MPNLFDPLKAGAFNLRNRIIMAPLTRQRAGVERVPNALMAQYYA
                     DRAAAGMILSEATSVTPQGVGYAETPGIWSDEQVEGWKLVTKAVHDAGGTILLQLWHV
                     GRISDPIFLNGDLPVAPSAIAAQGHVSLVRPQREFVTPRALELDEIQGVVAAFRKGAE
                     NAKLAGFDGVEVHGANGYLLDQFLQDSTNKRTDIYGGPIENRARLMLEVVDACIEVWG
                     ADRVGMHLAPRADSHTMGDSDRAATFGYVARELGKRKIAFIAARERVGVDSIGPQLKR
                     AFGGVYIANEKFTKESAQAALDRGDADAVAWGQLFIANPDLVKRFESDAALNAPVPET
                     FYARGTEGYTDYPTLETMD"
BASE COUNT          644 a          929 c          981 g          600 t
ORIGIN      
        1 agcgcgttga tgaagaagcg cgtgtcgcgt ttcatggtga gcagtgcgtg tccgtcgtgc
       61 catggcaagc gattgaagcc cgaggcgctg tccgtgacct tcgcgggact tgatataggc
      121 gagttatcgc agatgccgct cgcccgtgtt gccgaagtat tgcgccctgt tgcccgcggt
      181 gaggcgccaa cggacacaac tatctcagtg tcggccggtg agatcttgag caaaaacgaa
      241 atgcgggcag ccgtcgcacg acgggtcgcg tccggcggat cggaacataa ggcctctccc
      301 gacatcagac ggactacgaa tcaatcgaga gagaagcagg ttgcggcgca acggattgcg
      361 agtgagctac tcgaacgcct gaccacgctg atcgatctcg gcctgggata tctggcgctg
      421 gaccggggca caccaacttt atcgtcaggc gagttgcagc ggctgcggct tgcaactcag
      481 ctcgcatcgc agttgttcgg tgtgatctat gtcctcgatg aaccctccgc cggtcttcac
      541 cccgccgatg gcgaagcgtt gttcagcgcg ttacagcgac tgaaggctgc gggtaattca
      601 ctgttcgtgg tcgagcatga tctggagatg atgcgccggg cggactggct ggtggatgtg
      661 ggtccggccg caggcacggc gggcggacag attgtctata gcgggccgcc ggccggcctg
      721 gcggacatcg aggaatcgca aacgcggctg catctgtttg gcgactaccg gccaactccg
      781 cgttcgaagc gcacgccggc gcactggctg cggctcgaga acgtaacgcg taacaacttg
      841 cacgacctgg aggtagcgtt cccgctcggc tgcttcacca ccgtcacggg cgtctcgggc
      901 tcgggcaaat ccagcctcgt cagccaggca ctgccggagt tggttacaga gcggcttggc
      961 cggccaatcg cggcagaaac ggatgaagaa cgcgatccat tactggatgt cgaggacatt
     1021 ccgaccggcg gtgagataac cgccggcatg gagcgaatcc ggcggctggt tcgagtcgat
     1081 cagaagccga tcggacgcac gccgcgttcc aacctcgcaa cctataccgg ccttttcgat
     1141 catgtgcgca agttgttcgc cgagacgtcc acggcgcgtc gtcgccacta tgacgcgggc
     1201 cgattctcgt tcaacgttgc gaagggtcga tgtccgacgt gcgagggcga agggttcgtg
     1261 agcgtcgaat tgctgttcat gccgagcgtg tatgcaccgt gttcaacgtg cggagggaca
     1321 cgctacaacc cggagacgct ggagatcgaa tggaagggaa agaatatttc ggacgtgctg
     1381 cagatgaccg tggacaccgc atgtgcgttt ttcgccgacg agccgcagat catgcgcgcg
     1441 ctcaccgtgc taaaggacat tggactgggt tatttgcgcc tgggccaacc ggccactgaa
     1501 ctgtccggcg gcgaggcgca gcggatcaag ctcgcgaccg aacttcagcg tgcgcagcgg
     1561 ggcgagaccc tttacatcct ggatgagccc acgaccggac tgcattccac ggacagcgac
     1621 cgcttgttga ttcaattgca gggtcttgtc gattcgggta acacggtgat cgtggtcgag
     1681 cacgacatgc gggtggcggc ccaaagcgat tgggtcatcg acatgggacc cggcgcgggc
     1741 gaggaaggag gaaagctggt ggtcagcggc acgccggaag acgtggtgaa gcgggggaaa
     1801 gcgagcagct ttacgtcgaa gtatctaaag gcctgcttgc cctgaggtct cgcctgagcc
     1861 actaagcaaa gccgtgaaaa caggacagcc ggtgactccc tatggaacca ccggctgccg
     1921 caagccaaaa ccggaacgct tagtccatgg tctcgagcgt cggatagtcc gtgtaccctt
     1981 ccgtaccgcg agcatagaac gtctcgggga cgggagcatt caacgcggca tcgctttcga
     2041 agcgtttcac gagatccggg ttggcgatga acaactgccc ccacgcgacg gcgtccgcat
     2101 caccccggtc cagcgctgcc tgagcacttt ccttggtgaa cttctcgtta gcgatataaa
     2161 ctccgccaaa ggcgcgcttc aactgcggtc cgatcgagtc aacgcccacg cgttcacgtg
     2221 ctgcaatgaa agcgatcttg cgcttgccca actcacgtgc aacgtaacca aaggtagcgg
     2281 cgcggtcgct atcgcccatg gtgtgcgaat cggcgcgcgg ggcgagatgc atgccgaccc
     2341 ggtcagcgcc ccacacttca atacacgcgt cgaccacttc aagcatcagg cgtgcgcgat
     2401 tttcaatcgg gccaccgtag atgtccgtgc gtttgttcgt gctgtcctgc aggaattggt
     2461 caagcagata accgttcgcg ccgtgcacct caacgccgtc gaaaccagca agcttcgcgt
     2521 tttcggcacc tttgcggaat gctgcaacca ccccttgaat ttcatcgagt tcgagcgctc
     2581 gcggcgtcac aaattcgcgt tgcggccgca caaggctgac atggccttgc gctgctattg
     2641 cgctcggcgc caccggcagg tcaccgttga ggaagatcgg gtccgagatc cggccgacgt
     2701 gccacagttg caacaggatc gtgccgcctg cgtcgtggac tgccttcgtc acgagcttcc
     2761 agccttcgac ctgctcgtcc gaccagatgc ccggcgtttc agcgtaaccc acgccttggg
     2821 gcgtaaccga agtcgcttcg ctcaggatca tgcccgctgc agcgcgatcg gcgtagtact
     2881 gagccatcaa cgcgttgggt acacgttcaa cacccgcacg ctgacgcgtc agcggcgcca
     2941 tgatgatgcg gttacgaaga ttgaaggcac cggctttgag cgggtcgaaa agattcggca
     3001 ttttgaaagt attcctaaat aggttgtaac gaaaaccagc aaccagaaca cggtgaacaa
     3061 gctgacgcgt caggggccgt cagagccctt tatgaagctg atcgagaaac gcctgaatga
     3121 ccgcttcgtc gcgcctgaaa aatatccact gccc
//
LOCUS       DATGBK010001802         1981 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322077, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001802 DATGBK010000000
VERSION     DATGBK010001802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322077"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..739
                     /locus_tag="VKJ77_25415"
     CDS             <1..739
                     /locus_tag="VKJ77_25415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HMC48680.1"
                     /translation="LASVSSWAVIAEKISRFRSLRRRAGVWLDLLGSGRSLIKLSASV
                     QKHPTDPFSRIYAAVLGEWRQTHDQNLQATHRGADGLKERINRVAGIATNIEIGKLQR
                     GLSILATVGSVSPFVGLFGTVWGIMNSFQGIAASNNTSLSVVAPGIAEALFATALGLV
                     AAIPAVIAYNRASGDLNEYASTLSTLTGIVEVQLSRQVDAGDATVDAAHGDNRTKQHE
                     KQQDKQQDKGVQSASGADVRSIATQGA"
     gene            742..1173
                     /gene="tolR"
                     /locus_tag="VKJ77_25420"
     CDS             742..1173
                     /gene="tolR"
                     /locus_tag="VKJ77_25420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018438531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098567 - periplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolR"
                     /protein_id="HMC48681.1"
                     /translation="MAVKLSNNRGALGGVPPVSEINVTPLVDVMLVLLIVFMVAAPLM
                     ASGVKVDLPTSNAKPLSEEKPPIAVSLNAVGKLFVGKTEVTNATLVSALTGATEGDKT
                     RRINIRGDKDLAYGKVIEAMGEINDAGFSKIALVSEPPQTP"
     gene            complement(1411..>1981)
                     /locus_tag="VKJ77_25425"
     CDS             complement(1411..>1981)
                     /locus_tag="VKJ77_25425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48682.1"
                     /translation="GGFDLREQDSNAPRRPHVVAAALLEGTVDAIYAKGAVSATLIAE
                     HGLRPIFDINANPDPLVRVNAGTPRPITVDRTLALAHPDVVARYLAVLLRTAQWAGDH
                     PEEVVTAIAAETGSTAQAVRRGFGPNLHRQFTPLLSDLYVEGLRQQKVFLLREGFLRA
                     DFAYDEWILREPLELARQLAEEIEFSRAA"
BASE COUNT          379 a          632 c          617 g          353 t
ORIGIN      
        1 gctggcatcg gtcagcagtt gggcggtcat cgcggaaaag atctcgcgat ttcgcagcct
       61 gcgccggcgc gccggagtct ggctcgatct gctcggcagc ggccgctcgc tcatcaagct
      121 ctcggcgtcg gtgcagaagc accctacgga ccccttctcg cgcatctacg ccgccgtgct
      181 cggcgagtgg cgccagaccc acgaccagaa cctgcaagcc acgcaccggg gcgctgacgg
      241 gcttaaggag cgtatcaatc gcgttgcggg gattgcgacg aacatcgaaa ttggcaagct
      301 gcaacgcgga ttgtccatcc tcgccacggt tggctcggtc tcgccgttcg tgggcctctt
      361 cggcacggtg tggggcatca tgaattcgtt tcaggggatt gccgcgtcga acaatacgag
      421 cctgtccgtc gtggcgccgg gtattgccga agcgttgttc gccacggcgc ttgggctcgt
      481 cgcggccata cccgcagtga tcgcgtacaa ccgcgcatcg ggagacctga acgagtacgc
      541 cagcactttg agcacgctca ccggtatcgt ggaagtgcag ttgtcgcgtc aggtggacgc
      601 gggcgacgcc acagtcgatg cagcgcatgg cgacaaccgt actaagcagc acgaaaagca
      661 acaggacaaa cagcaggata agggcgtgca atcggcaagc ggcgcggatg ttcgatcgat
      721 cgcgactcaa ggagcctgat catggccgtc aagctgtcga acaatcgggg tgccctgggc
      781 ggcgtgccac ccgtcagcga gatcaacgtg acgccgctcg tcgacgtgat gcttgtgttg
      841 ctgatcgtct tcatggttgc cgcgcctctc atggcatccg gggtaaaggt cgacctgccc
      901 accagcaacg cgaagccctt gagcgaggaa aagccgccca ttgcggtcag tctgaacgcc
      961 gtgggtaaat tgtttgtcgg caagaccgag gtcacgaacg ccacgctggt aagcgcgctc
     1021 accggcgcca cggaaggcga caagacacgg cggataaata ttcgtggtga caaggacctt
     1081 gcatacggca aggtgatcga ggcaatggga gagatcaacg acgccggatt ctccaagatc
     1141 gccttggtat ccgaaccgcc tcaaacccct taagcgatgc cgtcgacacg gtgtgacttc
     1201 atccgccggg cgctgctgtc gggcgccgct ctttactctg aattcaccgg ccggctcacg
     1261 acagcagcgc ctttgcccgc tgcatctaaa cgcggcggtc gctgttggta gcgcagtatt
     1321 cggagccgcc caccctcacc agcgcatgga cgacggcggg tcgctgactc cgccgtcgtc
     1381 catgccattc aatcgattgc atcgctccga tcaagccgct ctcgaaaatt cgatctcttc
     1441 ggcgagctgc cgggccaact cgagcggctc gcgcaggatc cactcgtcgt aggcgaaatc
     1501 ggccctgagg aaaccctcgc gcagaaggaa caccttctgc tgacgcaatc cctctacgta
     1561 gaggtccgag agcaacggtg tgaactgccg gtgaaggttc ggaccgaagc cccgccgcac
     1621 tgcctgcgcc gtgctccctg tttctgccgc gattgcagta accacttctt ccggatgatc
     1681 cccggcccac tgcgcggtgc gtagcaacac ggcgagatag cgcgcgacca cgtccggatg
     1741 cgcaagtgca agcgtcctgt ccaccgtgat ggggcgcggc gtgcccgcgt tgacacgcac
     1801 cagcgggtcg gggttggcgt tgatgtcgaa gatcggccgc aaaccatgct ccgcgatgag
     1861 tgtcgcgctg accgccccct tcgcgtagat cgcgtccacc gtaccttcaa gaagtgcagc
     1921 agcgaccacg tgaggccggc gcggcgcgtt cgagtcctgc tcgcgcaagt cgaagccacc
     1981 c
//
LOCUS       DATGBK010001803         2424 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_183316, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001803 DATGBK010000000
VERSION     DATGBK010001803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183316"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..152)
                     /locus_tag="VKJ77_25430"
     CDS             complement(<1..152)
                     /locus_tag="VKJ77_25430"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster binding
                     domain-containing protein"
                     /protein_id="HMC48683.1"
                     /translation="MSETVAAAVGEFIVKIASTGQQIPVSGDQSIADALEEAGVAIET
                     SCRAGL"
     gene            complement(389..1240)
                     /locus_tag="VKJ77_25435"
     CDS             complement(389..1240)
                     /locus_tag="VKJ77_25435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007580780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HMC48684.1"
                     /translation="MAAVMEARPDASEKLVKDGKVSIYQPEQDGLIFPELPTFASAAA
                     QRQHLKERLVGACRAFAQQGFDYGFAGHLTVRDPENPGLYWTNPMAIHFSQVKVSNLI
                     CADHEGRVVEGNHAINRAGFVLHAAVHEMHQDIVAMCHAHTVYGTAFAALGKKLEPIT
                     QDAAAFFEDHVVIGDEAGQVAVEVKAGHKVADAFKGVKAAIHQNHGLLTASRHSIESA
                     AFWFIALERCCQQQLLIDATGIVPRLVTPERARYSREHVGSEYIGWLHFQTIWNDLVA
                     KQPDMFD"
     gene            1387..2304
                     /locus_tag="VKJ77_25440"
     CDS             1387..2304
                     /locus_tag="VKJ77_25440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018419805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48685.1"
                     /translation="MRRIPNFVLLRAFEAAARLESFTLAAEELHLSQSAISHQVKELE
                     TYFGLPLFHRRNRRVETTAEGRRLFDSLGRVFDVIEAACSEVALSPQAQVLAVHCAPS
                     LAVKWLGPRLPKFMQAHPDITIRLSSGAEPIDLTRVHEVDIAISYGMAVERPGLHVYP
                     LGAERIVPMCSPGMLREGVSLEQQIVDFTLIDSQLSRVTWRDWFTLNGLAFPNKPRPS
                     FDRGALAISAAVDGMGIALETTRLAEREFARGELIEFGEGRFKPFMRETHFLSYRTNE
                     RNLDKVKLFRLWLGDIAGMTAQWQADAAL"
BASE COUNT          497 a          722 c          681 g          524 t
ORIGIN      
        1 cacaatccgg cccggcacga ggtttcaatc gccacgcctg cctcctccaa cgcatcggca
       61 atgctctggt cgcctgacac cggtatctgc tgccccgtgc tggcaatctt cacgatgaac
      121 tcgccgacag ccgccgcaac ggtttcgctc accgcacgtt ccggcgcctt gaaatgttca
      181 aagtggaccg ttccgggcgg ccagttcgaa gttgttgcga ggacgactga tacgcacctt
      241 gtcctgcacg cgcaatgtgt cgtgcaacgc ggccggacta gcgggattca tgttttgtct
      301 cccggggtcg gataaaagcg ggacgccggc ccgctcttgg cggtggctgt gtcgtccctg
      361 cttaaactgc gttcaacgca tggcgtggtc agtcgaacat gtcgggctgc ttggcgacaa
      421 ggtcattcca gatcgtctga aaatgcaacc agccgatgta ttcgctaccc acatgctcgc
      481 ggctatagcg ggcgcgttcc ggcgtgacga gcctcggcac aatgccggtt gcatcgatca
      541 acaattgctg ttggcagcaa cgttccagcg cgataaacca gaacgctgcg gactctatgc
      601 tgtgacggct cgccgtcagc aagccgtgat tctggtgaat ggcagccttc acgcccttga
      661 acgcatccgc gactttatgg cccgccttca cttcaaccgc gacctgtccg gcttcatcgc
      721 cgatcaccac atggtcttcg aaaaatgcag cggcatcctg cgtgatcggc tcgagctttt
      781 tgccgagcgc cgcgaacgcc gtgccataca ccgtgtgcgc atggcacatc gccacaatgt
      841 cctgatgcat ttcgtgaacg gcggcgtgca acacaaaacc cgcccgattg atcgcatgat
      901 tgccttcgac cacacggcct tcgtgatcgg cgcaaatcag gttcgatacc ttcacctgcg
      961 agaagtgaat ggccattgga ttcgtccaat acaagccggg attttccgga tcgcgcacgg
     1021 tcaggtgacc ggcaaaaccg tagtcgaaac cctgttgcgc gaacgccctg cacgctccga
     1081 ccaagcgttc cttcaagtgc tgccgttgcg ccgcggcgct cgcgaacgtc ggcaattccg
     1141 ggaagatcag cccgtcctgt tccggctgat aaatcgatac cttgccgtcc ttcaccagct
     1201 tttccgacgc gtcgggacgc gcttccatga cagccgccat ttggctttct cctgtagaac
     1261 aagtggattg ttttcagggc ttaatggtca actccgtgac gctcattgac aaacgatgac
     1321 tgttcataga aagatgaaca ggattcatgc atcggcgaaa aacattccaa cggagacggc
     1381 acgcgcatgc gacgaatacc gaatttcgtg ctgctgcgcg cgttcgaagc tgctgcaaga
     1441 cttgaaagct tcacgttggc ggcagaggaa ttgcatctgt cgcaatccgc gatcagtcat
     1501 caggtcaagg agctggagac ctatttcggc ttacctttat ttcatcgacg caaccggcgc
     1561 gttgaaacca cggctgaagg cagaaggctt ttcgacagcc tcggacgcgt attcgatgtg
     1621 atcgaggccg cgtgcagcga agtcgcgtta tcgcctcagg cacaggtgct ggccgttcat
     1681 tgcgcgccga gtcttgctgt gaaatggctc ggtccgcgtc tgccgaaatt catgcaggca
     1741 catcctgaca tcacgatccg gctttcatcg ggcgcggagc cgatcgacct tacgcgagtg
     1801 catgaggtcg atatcgctat ctcttacggt atggcggtcg agcgtcccgg gctgcatgtt
     1861 tacccgctcg gcgcggagcg gatcgtgcca atgtgctcgc ccggcatgtt gcgcgaaggg
     1921 gtgtctctcg agcagcagat tgtcgacttc acgctgatcg attcgcaact cagccgagtg
     1981 acatggcgcg actggttcac gctcaatgga ctggcgtttc cgaacaagcc ccgcccttcg
     2041 tttgatcgcg gcgcattagc gatatccgcc gcggtcgacg gcatgggtat cgcactggaa
     2101 accacgcggc tcgccgaacg cgaattcgca cgcggcgaac tgatcgagtt cggtgaaggg
     2161 cgcttcaaac ccttcatgcg cgagacgcac ttcctgtcgt accggacgaa cgaacgcaac
     2221 ctcgacaagg tgaagctgtt caggctctgg ctcggcgaca tagcgggaat gaccgcgcag
     2281 tggcaagccg atgccgcgtt ataagcggct ctcggcaaaa attgcatttt tgaatataaa
     2341 aatgcaaaat acgtcgaatg gaaaatactc gtgatttcaa ttccgaagcg cggctgacgg
     2401 ccggtaatgc gtcacttcgt tttg
//
LOCUS       DATGBK010001804         1751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_345411, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001804 DATGBK010000000
VERSION     DATGBK010001804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345411"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..823
                     /locus_tag="VKJ77_25445"
     CDS             <1..823
                     /locus_tag="VKJ77_25445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013337989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC48686.1"
                     /translation="TNNEPPDRERAIRMGRLVLVAEDHPVNQELIRHQLALLGFACDV
                     VQDGVEALAALKQTHYGFLITDCHMPNMTGYELTRRVRASELGLSKRLPILGITASTA
                     PEELSMCREAGMDDCFVKPTRLVTLRDHLNRWRVMDSASAAPERVVVEEKDVETFDAE
                     TDKIDLGYMTQLWGSETTVKALLDAFVSSFRDDLDTLRALLDGGSVAQLREWHHRVIG
                     AASVLQYRPLQIALDRFRRDLVDKPEALRREDGAVLIARCEVLLERIEAQCSEIA"
     gene            complement(998..>1751)
                     /locus_tag="VKJ77_25450"
     CDS             complement(998..>1751)
                     /locus_tag="VKJ77_25450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="substrate binding domain-containing protein"
                     /protein_id="HMC48687.1"
                     /translation="SLTEAGASYADGCRAVIEQVEAIESTVSQTSFDPSGTLKLVASA
                     SFSLFGLTPLLCEYREAFPNVKLRLTLLHRPVDLVDEGFDVGIVVPRMVNSGTLINRP
                     LFKVTPVIVGAPDYLSKHGVPLRPADLAAHSFLSPSADIHGSTWSFTGPTGEDEDIVI
                     DPDYTVNNSQMLRQAARSGMGITALPESHVADDLEQGALVRLLTDYAVSNADKEVSLV
                     YPGRRHVSAKTRSFVDFALAHFRKESAMNALF"
BASE COUNT          379 a          504 c          525 g          343 t
ORIGIN      
        1 tacgaacaac gagccacccg atcgtgagcg cgcaatccgc atggggcggc ttgtgctcgt
       61 cgcagaagat catcccgtga atcaggagct gattcgtcat caactggcgc tgctgggttt
      121 tgcgtgcgac gtggtccagg acggcgtgga agcgctcgcg gcactgaagc agacgcacta
      181 cggctttctc ataaccgact gccacatgcc gaacatgacc gggtatgaac tgacgcggcg
      241 cgtgcgggcg agcgaactgg ggttgtcgaa gcgattgccg atcctgggca ttaccgcgag
      301 caccgcgccc gaggagttgt ccatgtgccg cgaagccggc atggatgact gcttcgtcaa
      361 gcccacgcgg ctcgttactt tgcgcgacca tttgaatcga tggcgtgtaa tggacagcgc
      421 atcagcggca ccggaacggg ttgttgtcga ggaaaaggat gtagagacct tcgacgcaga
      481 aaccgataag atcgatctgg gctacatgac gcaactctgg ggtagtgaga ccacggtaaa
      541 ggcgttgctc gacgcattcg tgtcgtcgtt ccgcgatgat ctcgacacgc tcagagccct
      601 gctcgatggc ggcagcgtgg cgcagttgcg cgagtggcat catcgggtga tcggagcggc
      661 gagcgtgttg cagtatcggc cattgcagat tgcgctcgac cggtttcgac gcgatctcgt
      721 cgataaaccc gaggcccttc gacgcgaaga tggcgcagtg ctgatcgcgc gctgcgaggt
      781 tctgcttgag cgcattgaag cgcagtgctc ggaaatagcg tgatgttcgc ggaccggggc
      841 gagggctgtt catgcaatgc cattcctctt gccggtcgga taaacgcatg actatccaac
      901 actgaagttt caaccaggcg ccgcaaacaa gacgggccga ttccaacaca tgttggaatc
      961 ggcccgtttg ttcgtcatgc gtgcgctttc aaatctgtta aaacaatgcg ttcatcgccg
     1021 actccttcct gaaatgcgcg agagcgaaat caacaaacga gcgtgttttt gcggacacat
     1081 gacggcgtcc cggatacacc agcgacactt ccttgtccgc gttacttacc gcgtagtcag
     1141 tgagcaaacg cacgagcgca ccctgttcaa gatcgtccgc gacatggctc tccggcaatg
     1201 ctgtgatacc cattccggat cgtgcggctt gtcgaagcat ttgcgaattg ttgaccgtgt
     1261 aatccggatc gatgacgata tcttcgtcct cgccggtcgg gcccgtgaac gaccacgtgg
     1321 acccgtgtat gtcggctgac ggtgacagga acgagtgagc ggcaagatca gcgggccgca
     1381 gcggtacgcc gtgtttcgac aggtaatccg gtgcgcccac aataaccggc gtcaccttga
     1441 acaagggccg attaatcaac gtgccgctgt tcaccatgcg cggcacgaca ataccgacat
     1501 cgaaaccctc gtccaccaga tccactggcc gatgcagcag cgtgagacgc aacttcacat
     1561 tgggaaacgc ctcgcgatac tcacacagca gcggcgtgag tccgaacaat gagaacgaag
     1621 ccgatgccac gagcttcagc gtaccggagg gatcgaacga agtttgcgac accgtcgact
     1681 caatcgcctc gacctgttct atgaccgccc ggcagccgtc agcgtacgac gcaccggctt
     1741 cggtgagcga c
//
LOCUS       DATGBK010001805         1980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_160246, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001805 DATGBK010000000
VERSION     DATGBK010001805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160246"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VKJ77_25455"
     CDS             <1..382
                     /locus_tag="VKJ77_25455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008443813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HMC48688.1"
                     /translation="MSAADLLPGAVRALDTVRARGLRIGLASVSKNAFTVLGRLGITD
                     KFDYVVDAATIARGKPDPEIFLKAARELGVAPEDCLGVEDAVAGVASIKSAGMFALGI
                     GHPFVLTQADVVITSLSDFNLESY"
     gene            414..1682
                     /locus_tag="VKJ77_25460"
     CDS             414..1682
                     /locus_tag="VKJ77_25460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020704150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48689.1"
                     /translation="MKNNRILFALFLIYFVFAILLNSVGTVILQVINNYGITKSSASV
                     LEGFKDLPIAAVSFLIASFLPRLGYKKAMLAGLAIVTAACVAMPVLPSFATTKLLFFC
                     VGVSFALVKVSVYSTLGLIAADRKQHAGIMNMLEGFFMLGVLSAYWVFSYFIDSAHPQ
                     SQSWLQVYWVLAALCAVTFALLATTPFNEDMAALPADRSIAQDFAAMLKLFFKPLVCV
                     FVITAFLYVLVEQSVGTWLPTFNNEILKLPAAMSVQVTSIFAACLAIGRLSAGVLMRK
                     LNWYPVLNVCVVGMAAMVLLALPLTHDVVLDPNISWSTAPIATFLFPLIGLFMAPVYP
                     GINSVMLSSLPKNQHSAMTGLLVIFSALGGTTGSLITGYVFGNFNGHFAFYLTLVPIT
                     IVLIMLYFFKKAVDGGTDGFDASVIISGQH"
     gene            1716..>1980
                     /locus_tag="VKJ77_25465"
     CDS             1716..>1980
                     /locus_tag="VKJ77_25465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008443815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC48690.1"
                     /translation="MNLKSLANLLGMSKTTVSRALNGYPEVNGHTRERVLNAAKEAGY
                     QANPMARGLAMGRTNVFGIIYPPLPADLGDPMFLDVVSGMSEAL"
BASE COUNT          347 a          585 c          607 g          441 t
ORIGIN      
        1 catgtccgca gccgatctgc tgccgggcgc ggtgcgggcg ctcgacacgg tgcgcgcgcg
       61 gggcttgcgc atcggcctgg cctcggtcag caagaatgcc tttacggtgt tgggccgcct
      121 gggcatcacc gataaattcg actacgtggt tgacgcggcg actatcgcgc gcggcaagcc
      181 ggacccggag atcttcctga aggcggcgcg ggaactgggc gtggcgccgg aagactgcct
      241 cggcgtggag gatgcggtgg cgggcgtggc gtcgatcaag tcggccggca tgttcgcact
      301 ggggataggc catccctttg tgctcactca ggccgacgtg gtcatcacga gcctgagcga
      361 cttcaatctc gaatcatact aaattatata aataataaaa attcggagac agtatgaaga
      421 acaatcgcat tctatttgcg ctatttctga tttactttgt atttgcgatc ctgctcaata
      481 gcgtgggcac ggtcatcctt caggttatca acaactacgg catcaccaag tccagcgcca
      541 gcgtgctgga aggattcaag gatttgccga ttgcggcggt gtcgttcctg atcgcgtcct
      601 tcctgccgcg acttggctac aagaaggcca tgctggccgg cctggccatc gtcaccgccg
      661 cctgcgtggc gatgccggtg ctgccgtcgt tcgccaccac caagctgttg ttcttctgcg
      721 taggcgtgtc gttcgcgctg gtgaaggtgt cggtgtattc gacgctggga ctgatcgcgg
      781 ccgaccgcaa gcagcacgcc ggcatcatga atatgctcga agggtttttc atgctcggcg
      841 tgttgagcgc ctactgggtg ttcagctact tcatcgactc ggcccacccg caatcgcaaa
      901 gctggctgca agtctactgg gtgctggcgg cgctgtgcgc ggtcaccttc gcactgctgg
      961 cgacgacgcc cttcaacgag gatatggccg cgctaccagc cgaccgcagc atcgcacagg
     1021 atttcgcggc gatgctcaag ctgttcttca agccgctggt gtgcgtgttc gtcatcaccg
     1081 cgtttttgta tgtgctggtc gagcagagcg tcggcacgtg gctgccgacg tttaacaacg
     1141 agatcctgaa actgccggcg gccatgagcg tgcaggtgac cagcatcttc gccgcgtgcc
     1201 tggcgatcgg acgcctgtcg gccggcgtct tgatgcgcaa gctgaattgg tatccggtgt
     1261 tgaacgtctg cgtggtcggc atggccgcga tggtgctgct ggcgctgccg ctgacgcacg
     1321 acgtggtgct cgatccgaac atcagctggt cgaccgcgcc catcgccacc ttcctgttcc
     1381 cgctgatcgg attgttcatg gcgccggtct accccggcat caactcggtc atgcttagtt
     1441 ccctgccgaa gaaccagcac tcggcgatga ctggcttgct ggtgattttt tcggcgcttg
     1501 gcggcaccac cggatcgctg atcaccggct acgtgttcgg taacttcaac ggccacttcg
     1561 cgttttatct gacgttggtg ccgatcacga tagtcttgat tatgttgtat tttttcaaaa
     1621 aggcggtcga tgggggtact gatggatttg atgcctccgt tataatcagc ggacagcatt
     1681 aaccatcacc atctcgccgc gaccccaccg cattcatgaa tctgaagagc ctcgccaatt
     1741 tgctcggtat gtccaagacc acggtaagcc gcgcgttgaa cggctacccg gaagtcaacg
     1801 gccacacgcg cgagcgcgtg ctgaacgcgg ccaaggaggc cggctaccag gccaacccga
     1861 tggcgcgcgg attggcgatg gggcgcacca atgtcttcgg catcatctac ccgccgctgc
     1921 cggcggacct gggcgatccg atgttcctcg acgtcgtcag tggcatgtcc gaggcgctgg
//
LOCUS       DATGBK010001806         1619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_90650, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001806 DATGBK010000000
VERSION     DATGBK010001806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90650"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..289)
                     /locus_tag="VKJ77_25470"
     CDS             complement(<1..289)
                     /locus_tag="VKJ77_25470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC48691.1"
                     /translation="MADVIRDEGVTERRDTDSGALARGLNILSRLHEAARPLSLQEIA
                     DSVALPASTCHRLLQSLDLAGYVYREGALYCPTPRAACPLPLEHPLSRLRRD"
     gene            603..>1619
                     /locus_tag="VKJ77_25475"
     CDS             603..>1619
                     /locus_tag="VKJ77_25475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007176353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48692.1"
                     /translation="MSTRREFLIKTGVITGGSLLGQGAWSASSASSAATGTTLVANTL
                     PEPAGLAAGSTPANPTNVVSSNLFDGLITYDEAFRPVPQLATSWTESADRRTITFTLR
                     NDVKWHDGVPFTSADVQYSIMEVSKKVHPIARPTFAQIIAVDTPDPHTVVFRLAQPSP
                     VIWSYLDTSSAFIFPKHLYAGTDPLTNPYNAKPVGTGAFVFKEWNRGNYIRLAKNPDY
                     WDKGKPHVDELIFRIIPDASARSIALQNGNVQYAPLTPVSLVEARRLEQNPDLVIDTK
                     GWRSNAPMFFMDFNLRQKRFQDVRVRRAIAHAINLKQLTKTVFYDFATPATGPVPSYQ
                     SRFYT"
BASE COUNT          346 a          483 c          485 g          305 t
ORIGIN      
        1 tgtcccggcg caagcgactc aacggatgtt caagtggcag cgggcatgcc gcgcggggtg
       61 tggggcaata aagcgcgcct tcccggtaga cataaccggc gagatcgagc gactggagca
      121 gccggtgaca ggtgctcgcg ggcaaggcca cgctgtccgc gatctcctga aggctgagcg
      181 gccgggccgc ctcatgcagc cgcgaaagga tgttcaaccc gcgggcaagc gcgccgctgt
      241 cggtatcgcg tcgctcggtg acgccttcgt ctcggataac gtccgccatg tctagcaaac
      301 tccggctgag caagggataa gccggcagtc ttgcgggtaa gcgtcaacgc cgattgacca
      361 gaattgcata tatgaattgc ttggttggtg agttgggaaa agccccatag aattcaaaaa
      421 aacggaaaat tcattccgaa atattgtaca gcctggtgtt ctttccggca gcgcacaacg
      481 tctactaatt cgctgaaacg gtgcatacgc gtccaccacg gggtggtgag cgccatgtgt
      541 atcgggcagc ggacaagtga cgtctactaa gtatgcctaa gcagataaga gcggaatacg
      601 gaatgtcgac acgaagagag tttctgatca aaaccggcgt gataaccggc gggagtttgc
      661 tcggccaggg cgcctggagc gcttcgagcg catccagcgc cgcaaccggc acgacgctcg
      721 tcgcgaatac gctgccggaa ccggccgggc tggcagcggg atcgacgccc gccaatccga
      781 cgaacgtggt gtcgagcaat ctgttcgacg gcctgatcac gtacgacgaa gcgttccgcc
      841 ccgtgccgca gctcgccacg tcgtggaccg aatcggcgga tcgccgcacg atcacgttca
      901 cgttacgcaa cgacgtgaaa tggcacgacg gcgtgccgtt cacatcggcg gacgtgcagt
      961 actcgatcat ggaagtctcc aagaaggtcc atccgatcgc gcggcctacc ttcgcgcaga
     1021 tcatcgccgt tgatactccc gatccgcata ccgtcgtgtt ccggcttgca cagccgtcgc
     1081 cggtgatctg gtcgtatctc gacacgtctt ccgcattcat tttccccaag catctctacg
     1141 ccggaaccga tccgctgacg aatccgtata acgccaagcc ggttggcacg ggcgcgttcg
     1201 tgttcaagga gtggaaccgc ggcaactata ttcgcctcgc gaagaatccg gattactggg
     1261 acaagggcaa accgcatgtc gatgaactga tttttcgcat catccccgat gcgagtgcgc
     1321 gcagcatcgc gctgcagaac ggaaatgtgc aatacgcgcc gctcacgccc gtgtcgctcg
     1381 tcgaagcgcg gcggctcgag cagaatccgg atctggtcat cgatacgaaa ggctggcgct
     1441 cgaacgctcc catgttcttc atggacttca acctgcgcca gaagcggttt caggatgtgc
     1501 gcgtgcgtcg ggcaatcgcg catgcgatca acctgaagca actgacgaag acggtgttct
     1561 acgacttcgc gacgcccgcc acgggaccgg ttcccagcta tcagtcgcgt ttttacacg
//
LOCUS       DATGBK010001807         2330 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322150, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001807 DATGBK010000000
VERSION     DATGBK010001807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322150"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VKJ77_25480"
     CDS             complement(<1..530)
                     /locus_tag="VKJ77_25480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004189184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003993 - acid phosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HMC48693.1"
                     /translation="MSNKNIDDLPPAEQGATVSRRGFLKLAGASGLATAAGGLASASR
                     AAATAVSPDGTPEQIHLTWGKEPWAEVVISWASLAPAVNPRVRFGRAGGTRMTVHGVQ
                     RTYTDGLNGEIVCTYHARLHGLQPAVNYEYEVTADNDSNASHPFSASFQTAPHGRAPF
                     RWTSYGDLATPNTGWVL"
     gene            811..>2330
                     /locus_tag="VKJ77_25485"
     CDS             811..>2330
                     /locus_tag="VKJ77_25485"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE3 domain-containing protein"
                     /protein_id="HMC48694.1"
                     /translation="MPEHTAVDQLGFRRIIRRNIALPIGAGLTTAAVFVALLFYLLSA
                     MDWLDHSERVVADGNDLIKIAVDRESSMRGFLITGDDSYLAPYELGRASLTAKLATLT
                     DLVGDNPPQIERLKRIGALEAQWDGIAGQLIILRRANQDYQGVMRTGKGKLEFDEMRR
                     EFAAFMDVELNLRWERTATVRRVTLTAVALFLGISLSLSLLLAVLGRRELTNLSATYD
                     RALRAQTEHTEILQQQAWLRTGQSLLAESAAGQQALPQLSRAMLEFLAQYLGVVVAAI
                     YVRDETSTLSRVAAYGFSRENEERPQSFAGAETLVGQAATDGRLIAIDNIPDNYLKVT
                     SGLGTSAPKSVVMAPIENGGTVNGVVELGFMKPVSARDIEFLKLIAGNMGASVEAALY
                     RERLQDTLEETQRLNEEMQLQQEELRTANEELEEQTTALEESQVDLGNQKTELESINE
                     QLTFQALALDQERRTQPGSSRTGTARRRPAACQPVQVRIPGEHVARVAHAAQQFADP"
BASE COUNT          491 a          703 c          712 g          424 t
ORIGIN      
        1 aggacccaac cggtattcgg cgtggcgaga tcgccgtagc tggtccagcg aaacggagcc
       61 cggccatgcg gggcagtctg gaaactcgcc gagaaggggt gggacgcgtt gctgtcgttg
      121 tcggcggtga cttcgtactc atagttgacc gcaggttgca gtccatgaag gcgcgcgtga
      181 tacgtgcaga caatctcgcc gttgagtcca tcggtataag tgcgctgaac gccatgtacc
      241 gtcatcctcg tcccgccggc acggccgaag cgtactcgcg gattgaccgc cggggcgagc
      301 gaggcccacg agatcaccac ctcggcccac ggctccttgc cccaggtcag gtggatctgc
      361 tcaggcgtgc cgtccgggct tacagcagtg gcagcggccc ggctagccga tgccagaccg
      421 cctgcagccg tagccagtcc ggaagcaccg gcaagcttga ggaaaccacg ccgcgaaaca
      481 gttgcgccct gctcggccgg gggaaggtcg tcaatgttct tgttcgacat atctggtgtt
      541 gtagtccttg agaggataag ccggcgcaag ccgcccagcg gcgcagagag cggaccggct
      601 cgaagaactc cattattgcc agatgtgttt accgggccgt gacatgcgtt cggtgattcg
      661 ttttcgccgt gaaatctgta ttatcccgcc agtgattggc acagcatttc cctccgggtg
      721 cgtaccaccg aacgtggtgc agggacatgc agcccacgct aatcattcgg tcgaatcgcg
      781 ctttttgcgc attaaataac agggataaaa atgcccgagc atactgctgt cgaccagctt
      841 ggctttcgcc gcataattcg tcgcaacatc gctttgccga tcggtgcggg cttgaccacc
      901 gccgcggtat tcgtcgccct tctgttttat ctgctgtcgg ccatggactg gctcgaccat
      961 tccgagcgcg tagtcgccga cggcaacgac ctgatcaaga tcgctgtcga tcgcgagtcc
     1021 agcatgcgcg ggttcctgat caccggcgac gactcctatc tcgcgcctta tgagctcggt
     1081 cgagccagtc tcaccgcgaa gctggccacg ctgaccgatc tcgtcggcga caacccgccg
     1141 caaatcgaac gtctgaaacg tatcggcgca ctggaggcgc agtgggacgg gattgccgga
     1201 cagctcatta tcctgcgtcg tgcgaaccag gattaccagg gcgtcatgcg caccggcaag
     1261 ggaaagctcg aattcgatga aatgcgccga gagtttgccg ccttcatgga tgtcgagttg
     1321 aacctgcgct gggaacggac ggcgacggtc aggcgcgtca ccctcacagc cgtggcgctc
     1381 ttcctcggca tcagcctttc gctcagctta ctgctcgccg tgctcggacg gcgcgagttg
     1441 acgaatctgt cggccacgta cgatcgcgca ctgcgggcgc agaccgaaca caccgaaatc
     1501 ctgcaacaac aagcgtggct gcgtaccggg cagagtctgc tggcggaaag cgctgccgga
     1561 caacaggcgc tgccacagct cagccgtgcg atgctcgagt ttcttgccca gtaccttggc
     1621 gtggtggtgg cggcgattta tgtccgcgat gaaaccagca cgttaagccg cgtcgcggcc
     1681 tacggtttca gccgtgaaaa cgaagagcgc ccacaatcct tcgcaggcgc agagacgctg
     1741 gtcggccaag ctgccacaga tggccggctg atcgcaatcg acaacatccc ggacaactat
     1801 ctcaaggtca catcgggact gggaaccagc gcgccgaaga gcgtagtcat ggcgccgatc
     1861 gagaacggcg gtacggtcaa cggtgtcgtg gaactcgggt tcatgaagcc ggtatccgcg
     1921 cgggacatcg aattcctgaa gctgatagcg ggcaatatgg gcgcgtcggt tgaagcggcg
     1981 ctgtatcgcg aacgtctgca ggatacgctc gaggaaacgc agcgcctcaa cgaggaaatg
     2041 cagcttcagc aagaagaatt gcgcaccgcg aacgaggaac tcgaagagca gaccactgcg
     2101 ctcgaagagt cgcaagtgga tctgggcaat cagaaaacgg agctcgaatc gatcaacgag
     2161 cagctcacgt tccaggccct cgcactcgat caagaacgaa gaactcagcc aggctcaagc
     2221 agaactggaa cagcgcgccg acgacctgca gcgtgccagc cagtacaagt cagaattcct
     2281 ggcgaacatg tcgcacgagt tgcgcacgcc gctcaacagt tcgctgatcc
//
LOCUS       DATGBK010001808         2346 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_137261, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001808 DATGBK010000000
VERSION     DATGBK010001808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137261"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1285
                     /locus_tag="VKJ77_25490"
     CDS             <1..1285
                     /locus_tag="VKJ77_25490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007737291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HMC48695.1"
                     /translation="AGSLSQLAFAEPNQTITDVAKSASGDKTAIRPLRVHAPESQLID
                     LRRRIKATRWPERETVTDDSQGVPLAMIQELARHWSTDYDWRKCEAKLNALPQFVTEI
                     DGLDIHFIHVRSKHENAMPLIVTHGWPGSVIEQFKIIDPLTNPTAYGASASDAFHLVI
                     PSLPGYGFSGKPTTTGWGPERTARAWVVLMKRLGYAQFAAQGGDLGGIVANVMAKQAP
                     PELLGIHVNFPATVPPEIAKALQAGDPAPSGLSDDERHAYEQLSSAAKKRRAYALEMG
                     TRPQTLYGLADSPIALASWLLDHGDGYVQPAAALTSAVFGRPVNGESAGALTRDDVLD
                     DITLYWLTNTGISAARFYWESHFNFLAAADVSVPAAVSVFPRENYQAPRSWTERAYHN
                     LIYYNRVDRGGHFAAWEQPQLFAEEVRAGLRPLRG"
     gene            1388..>2346
                     /locus_tag="VKJ77_25495"
     CDS             1388..>2346
                     /locus_tag="VKJ77_25495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HMC48696.1"
                     /translation="MWPALPLECALETIAEKPMNDNSQGSEDRGGKLRRGILRPVAAV
                     GRWLERVDPGTHRRIKGLRLVTAYGIAAALGTLQDIAHSVPSIISLGYLAGSFALWAS
                     VSEGKTTRAESSRDLVLLSFAAASGAGLFVVFSRPLQVWGRAGPELILVTGAFLVGYL
                     KRFGILGAGVGSQIYIGELLAYGARLTINDLWAIGIAALIAALASVVPRALSGPAERP
                     VATAALAAGPAPAPGRCSPAFFMGLQAATGALVIVALNGLIGLEESAWAITACTYVVA
                     GSATGTVQRVRRRILGTLIGVPIGLACLPVAEHAPLLIWAAAAL"
BASE COUNT          429 a          689 c          758 g          470 t
ORIGIN      
        1 tgcgggctcc ttgagtcagc tcgcttttgc agagcccaac caaacgatta ctgacgtcgc
       61 caaatcggcg agcggcgaca agaccgctat tcgtccgctt cgtgtgcacg cgccggaatc
      121 gcaacttatc gatttgcgga gacgcatcaa agcgacgagg tggcccgaac gggaaacggt
      181 caccgatgac tcgcaaggcg tgccgctcgc gatgattcag gaactcgcgc gccattggtc
      241 gaccgactac gactggcgca agtgcgaggc aaaactgaat gccttgccgc agttcgtgac
      301 cgagatcgat ggactggata ttcatttcat ccatgtccgc tcgaaacatg aaaatgcgat
      361 gccgctcatc gtcacgcacg ggtggccggg ctcggtcatc gagcagttca agattatcga
      421 tccgctgacc aatcccacgg catatggcgc gagcgcgtcg gacgcttttc atctggtgat
      481 tccgtccttg ccgggttacg gattttcggg caaaccgacc acaaccggat ggggtccgga
      541 gcgcactgca cgtgcttggg tagtactaat gaagcgcctt ggatacgcac agtttgcggc
      601 gcaaggcggc gatctgggcg ggattgtcgc gaacgtgatg gctaagcagg cgccaccgga
      661 attgctgggc attcacgtga acttccccgc gactgttcca cccgagattg cgaaggcgct
      721 tcaagcgggt gacccggcac catcgggtct ctctgacgac gaaaggcacg cttatgaaca
      781 actgagcagc gcggccaaga agcgacgcgc ctacgcattg gagatgggca cacgcccgca
      841 aacgctctac ggactggcgg actcgcccat tgcgctcgca agctggcttc ttgatcacgg
      901 tgacgggtat gttcagccgg cagcggcact gacctcggcc gtattcgggc gacccgtcaa
      961 tggagaatcc gcaggcgcgc tgacacgcga cgacgtcctc gacgacatca cgctctactg
     1021 gttgacgaac acggggattt ccgcggcgcg cttctattgg gaatctcact tcaacttcct
     1081 ggccgccgcc gatgtgtccg tcccggctgc tgtgagcgtc ttcccccgcg agaactatca
     1141 ggcaccgcgg agctggacag agcgtgcgta tcacaacctt atctattaca accgggtgga
     1201 tagaggcggg cacttcgccg cgtgggaaca gccgcaatta tttgcagagg aggttcgcgc
     1261 ggggttgcga ccgctgcgtg gttgatggat ccgacggatc gaaggaagtt ctgtggtctt
     1321 gcattgcgac ttgaatgaaa ccagaatcca tccacatgac gatcttcgcg ggcaagggga
     1381 gatcgtcatg tggccagcgt tgccgctcga atgtgccctg gaaacgatcg cggagaagcc
     1441 catgaatgac aactcgcaag gctccgaaga tcgtggtggg aaattgcgcc ggggcatcct
     1501 gaggccagta gcggcggttg gccgttggct ggaacgggtc gaccccggca cgcaccgtcg
     1561 aatcaagggg ttgcggctcg tgacggcgta cggcatcgcg gctgcactcg ggacgttgca
     1621 ggatattgcc cacagcgtgc ccagcatcat ctcgctgggt tatctcgcgg gaagcttcgc
     1681 actctgggcg agcgtgtcgg agggaaaaac gacgcgcgct gagtcgagcc gcgatctcgt
     1741 gctgctgagt tttgccgccg cgtcaggcgc gggcctgttc gtggtttttt cccggccgtt
     1801 gcaagtttgg gggcgggcgg gaccggaact gattctcgtg accggcgcgt ttctggtcgg
     1861 atatctcaaa cgattcggca tcctgggcgc cggagtcggg tcgcaaatct atattggaga
     1921 attgctcgca tacggcgccc gcctcacgat taatgatctg tgggctattg ggattgcggc
     1981 gctcatcgcc gccttggcgt cggtggtgcc acgcgcgctg agcggcccgg cagagcggcc
     2041 tgtcgcgaca gcggcgctcg ctgccggacc agcacccgct cctgggaggt gctcgccggc
     2101 gttcttcatg ggactgcagg cggccaccgg tgctttggtc atcgtcgccc tgaacggctt
     2161 gattggtctt gaggagtccg cctgggcgat caccgcatgc acctacgtcg tcgcaggttc
     2221 ggcgacgggc acggtacagc gtgtgcgtcg ccggattctc ggtaccctga ttggcgttcc
     2281 gatcggtctt gcctgcctgc cggttgcaga gcatgcgccg ctgctgatct gggctgcagc
     2341 cgcact
//
LOCUS       DATGBK010001809         2116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322183, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001809 DATGBK010000000
VERSION     DATGBK010001809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322183"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            127..750
                     /locus_tag="VKJ77_25500"
     CDS             127..750
                     /locus_tag="VKJ77_25500"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007743757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0106141 - flavin prenyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HMC48697.1"
                     /translation="MSADQKPRLVVGISGASGAVIGVRLLAALRRIGTHETHLIVSAS
                     GAVTAAQELGLTRNDLDALADVVHNVRDVGASIASGSFVTSGMVVAPCSMKTLAAVAN
                     GFADNLLTRAADVMLKERRRLVLVARETPLNLAHLRNMTMATEMGAIIMPPVPAFYAH
                     PKTIEDVVDHTVGRILDLFSIEHREIARRWSGLADDFGARRNEGADE"
     gene            747..>2116
                     /locus_tag="VKJ77_25505"
     CDS             747..>2116
                     /locus_tag="VKJ77_25505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013338222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HMC48698.1"
                     /translation="MNQREQTGLAGIDARAPEAVIAVQEALAPPLKPKTTHVGKSYER
                     FEDPAILTGRGRYGDDLGIKPGTLHAAVLRSPHAHAELISIDTTAALACEGVRGVLTR
                     DDLAAWSRPFVVGVKSKMEQWALATDRVRYVGEPVAVVMAESRGLAEDALDLIKVEYK
                     TLDPVTSIDGALKSDAAVLHPNVETNVISDRSFRYGEPEAAFRNAPHRVKLQAHYPRN
                     TCAPIECAVVVAEYLSGDEGYEVTSNFMGPFSLHAVMALALNVPANRLRHKAPRDSGG
                     SFGVKQAVFPYVVLMCLASRKANAPVKYVEDRLEHLSAATSATARLTTLEAAVENDGR
                     IIALNYDQIEDCGGYLRAPEPATFYRMHGCLTGAYAIPGLLVRNRVVLTNKTPTGLVR
                     GFGGPQVYFALERLMQRIAIQLKLDVLDVYRRNFVPADAFPYRAAAGALLDSGNYQEA
                     LKRSLA"
BASE COUNT          378 a          644 c          703 g          391 t
ORIGIN      
        1 gcggccggtg gtctattcgg gccatgtgtt cacccgcgtg cggattcccg gctacgacgc
       61 ggtcgatctc gacgcgctcg ttgcccccga taacgacagc ttcgacacgt acctgagcga
      121 gaagtaatga gcgccgatca aaagccgcgc ttggtcgtcg gcatctcagg ggcgagcggc
      181 gctgtcatcg gcgtgcggct gcttgctgcg ctgcgccgta tcggcacgca cgagacgcat
      241 ctgatcgttt cggcgtcagg tgcggtgacg gcggcgcagg agctcgggct aacgcgcaat
      301 gatctcgatg cgctggccga tgtcgtgcat aacgtccgcg atgtcggtgc gtcgattgcg
      361 agcggttcgt tcgtgaccag cggcatggtc gtggcgccct gttcgatgaa aacgctggcc
      421 gcggtggcga atggttttgc cgataacctg cttacgcgcg cagccgacgt gatgctgaaa
      481 gagcgccgcc gcctggtgct ggtggcgcgc gaaacgccgc tcaatctcgc gcacttgcgc
      541 aacatgacga tggcgaccga gatgggcgcg atcatcatgc cgccggtccc ggcgttctat
      601 gcgcatccca agaccatcga agacgtcgtt gaccataccg tcggccggat tcttgatctg
      661 ttcagcattg agcaccgtga aatagcccgg cgatggagcg gtcttgccga tgacttcggc
      721 gcgcgacgca acgaaggagc cgacgaatga accagcgcga acagaccggt ttagctggta
      781 tcgacgcgcg cgcacccgag gcggtcatag cggtgcaaga ggcgctggcg cccccgctga
      841 agccaaaaac cacgcatgtc gggaagtcgt acgaacgttt cgaagacccg gccatcctga
      901 ccggccgcgg ccgttatggc gacgacctgg gcatcaagcc gggcacgctg cacgcagccg
      961 tcctgcgctc gccgcacgcc catgccgaac tgatttccat cgacaccacc gctgcgctcg
     1021 cctgcgaagg cgtgcgaggg gtgctgacgc gtgatgacct tgctgcgtgg tcgcgcccgt
     1081 tcgtggttgg tgtgaagtcg aagatggagc agtgggcgct tgcgaccgat cgcgtgcgtt
     1141 acgtcggcga accggttgcg gtggtgatgg ccgaatcgcg tgggctggcc gaggacgcac
     1201 tcgacctgat caaggtggag tacaagacgc tcgacccggt gacgtcgata gacggcgcgc
     1261 tcaaaagcga cgcggcggtg ctgcatccga acgtcgagac caacgtgatc agcgaccgaa
     1321 gttttcgcta cggcgagccc gaagcggcat tcaggaacgc gccgcatcgc gtgaagctgc
     1381 aagcgcacta tccgcgcaat acctgtgcgc cgatcgaatg cgccgtggtc gtggccgagt
     1441 atctttccgg cgacgaaggg tatgaggtta cctcgaactt catggggccg ttctcgctgc
     1501 acgcggtgat ggcgctcgcg ctaaacgtgc cggctaaccg actgcgacac aaggcgccgc
     1561 gcgattcggg cggcagcttc ggcgtgaagc aggccgtatt cccctacgtc gtgctgatgt
     1621 gcctcgcctc gcgcaaggcg aacgcgccgg tgaaatacgt ggaagaccgg ctcgaacacc
     1681 tgagcgcggc gacctccgcc acggcgcggc tgaccacgct cgaagcggcc gtggaaaacg
     1741 atggccggat catcgcgctc aactacgacc agatcgaaga ttgcggcggt tatctgcgcg
     1801 cgcctgagcc tgccacgttt tatcgcatgc acggctgttt aacgggcgcg tatgccattc
     1861 ccgggctgct ggtgcggaac agggttgtgc tgacgaacaa gacgcctacg ggccttgtac
     1921 gcggtttcgg cggcccacag gtttatttcg cgctcgagcg cctgatgcaa cgtatcgcga
     1981 tccagttgaa gcttgatgtg ctggacgtgt atcggcgcaa ttttgttccc gccgatgctt
     2041 ttccctatcg cgcagcggcc ggtgcgttgc tggactcggg caattatcag gaagcgttga
     2101 agcgctcgct cgccga
//
LOCUS       DATGBK010001810         1991 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_21278, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001810 DATGBK010000000
VERSION     DATGBK010001810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1991
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21278"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..717
                     /locus_tag="VKJ77_25510"
     CDS             <1..717
                     /locus_tag="VKJ77_25510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006761267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC48699.1"
                     /translation="DAGYEGMSMRLITARADANLAAVNYHFGGKDALIHAMLTRRLDG
                     LNQNRLALLERFQSSLGSQITCEHILGAMFIPALQQSRCLEKSGPALLRLLGRAYTDP
                     SPFIRDFLRGIYADVAERFFRAFQTVLPHLPREELGWRLHFCIGSLSGILAGADTNSL
                     IADFTQGQRLEDSQLIGRLALVMVAALKAPLSPPNGACPFASMFAEREPVSNTAATST
                     ADSLSAGPFAHDTASQHAIA"
     gene            829..>1991
                     /locus_tag="VKJ77_25515"
     CDS             829..>1991
                     /locus_tag="VKJ77_25515"
                     /EC_number="1.3.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HMC48700.1"
                     /translation="MTASFVVALFIVSGALLYMQAPAVTWLAWAVIWVAIGWFAGVTG
                     PVVTALLAIVFVLPALVLAIKPLRRALLTKPIFDLFRKILPEMSPTERDAIEAGTVWW
                     DAELFSGRPKWDTLLALGAPVLTAEERAFIDTECTQLCDLANDWETTAVWQDLSPQTW
                     EFIKSKGFLGMIIPKQYGGKQFSAYAHSQVIMKLATRCSAAAVSVMVPNSLGPAELLM
                     HYGTEAQKNHYLPRLARGDEIPCFALTSPYAGSDAAAIPDVGIVCKGLHEGRETLGFR
                     VTWEKRYITLGPIATVLGLAFRALDPDHLLGTADEAGITCALIPTKHPGVNIGRRHWP
                     LNAVFQNGPNWGNDVFIPLDWVIGGREQVGNGWRMLMECLAAGRAISLPSSNVG"
BASE COUNT          352 a          649 c          584 g          406 t
ORIGIN      
        1 gacgccggtt acgaaggcat gtcgatgcgg ctcatcaccg ctcgcgccga tgcaaacctg
       61 gccgccgtga actatcactt cggcggcaag gacgcgttga tccacgcgat gctcactcgt
      121 cgcctcgacg gtctcaacca gaaccgcctg gcgttgcttg aacgcttcca gtcctcgctg
      181 ggttcgcaaa tcacctgcga gcacattctc ggcgcgatgt ttatcccggc gctccagcaa
      241 tcccgctgcc tcgagaaaag cggccctgcg ttactgcgcc tcctgggccg cgcctacaca
      301 gatccgtcgc cgttcattcg cgatttcctg cgcggcatct atgcggatgt cgccgagcgc
      361 ttcttccgcg cgtttcaaac tgtcctgccg catttgcctc gcgaagaact tggctggcgg
      421 ctgcactttt gcatcggctc gctcagcggc attctcgccg gcgccgatac gaacagcctt
      481 atcgccgatt tcacgcaggg ccagcgtctg gaggactcgc aattgatcgg ccgtctcgca
      541 ctcgtcatgg tggccgcgct taaagcgcct ctgtcgcccc caaatggcgc ctgcccgttc
      601 gcctccatgt tcgccgagcg cgaaccggtc tccaatactg cagcaacctc gacggcggac
      661 tcattgagcg cgggtccgtt cgcgcacgat accgcgtcgc aacatgccat tgcctgactt
      721 gaggatgcac gcgccgggta tgtaatgtgc tgaacattaa gctgccgatg cacaccgcct
      781 ccatgccgtt cccgcgcaca ctatcgaaca acatcaggag aggtcgtcat gacagccagc
      841 ttcgtggtcg cactgtttat cgtgagcggc gctttgctgt atatgcaagc gcccgcagtt
      901 acctggctcg catgggcggt gatctgggtg gctatcggct ggttcgcggg ggtgaccggg
      961 ccggttgtca cagcgctcct cgcgatcgtc ttcgtgctgc ccgcgctcgt gcttgctatc
     1021 aagccgctgc gccgtgcgct gctgaccaaa cccatcttcg atttgttccg caagatcctg
     1081 ccggaaatgt cgccgaccga gcgcgatgcg atcgaagccg gcacggtctg gtgggatgca
     1141 gagctgttct ccgggcgccc gaagtgggac acgctgctcg cactcggcgc accggtgctc
     1201 acggcggaag agcgcgcgtt catcgacacg gaatgcacgc aactctgcga tcttgctaac
     1261 gactgggaaa cgacagcagt ctggcaagac ttgtcgccgc aaacttggga attcatcaag
     1321 tcgaagggct tcctcggcat gatcattccg aagcagtacg gcggcaagca attctccgcc
     1381 tacgcgcatt cgcaggtcat catgaaactc gccacgcgct gctccgccgc agcggtttcg
     1441 gtgatggtcc ccaactcgct cggccccgcc gaattgctga tgcactacgg caccgaagcg
     1501 cagaagaatc actatctgcc gcgtctcgct cgcggcgatg aaatcccctg cttcgcgctg
     1561 accagcccct acgcggggtc agacgcggcg gcgattcccg acgtgggcat cgtatgcaag
     1621 gggttgcatg agggccgtga aacgctcggt tttcgcgtga catgggagaa gcgctacatc
     1681 acgcttgggc ccatagctac agtgctaggc ctcgcgtttc gcgcgctcga tcccgaccat
     1741 ctgcttggta ccgccgatga agccggcatc acttgcgcgc tcatcccgac caagcatccg
     1801 ggcgtaaata tcgggcgccg tcactggccc ctgaatgcgg tattccagaa cggcccgaac
     1861 tggggcaacg atgtatttat cccactcgac tgggtgatcg gcgggcgcga acaagttggc
     1921 aatggctggc gcatgctgat ggaatgtctc gcagcgggac gcgccatttc gttgccatcg
     1981 tcgaacgtgg g
//
LOCUS       DATGBK010001811         1979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_45293, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001811 DATGBK010000000
VERSION     DATGBK010001811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45293"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            755..1567
                     /gene="cobA"
                     /locus_tag="VKJ77_25520"
     CDS             755..1567
                     /gene="cobA"
                     /locus_tag="VKJ77_25520"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010109110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HMC48701.1"
                     /translation="MTIGKVTLLSAGPGDLDLLTIKAAKALALADIVLLDDLANPEIV
                     SLAPQARVIRVGKRGGCKSTPQAFIQRLMQRYALKGLHVVRVKGGDALLFGRAGEELT
                     ALRHAQIPVEIINGISSGFAAAASLGISLTHREHCQGVTFVTAHKQDHGEPNWAALAA
                     TGTTLVIYMGMTRIESLCHALLSALPASTPAAVVQWAGTASERRWLGQLDRLATDAVK
                     EDLGSPAVILVGNAISEAVDWVTHHGTGALPVDEHAASNAWQEITEAVQHAA"
     gene            1680..>1979
                     /locus_tag="VKJ77_25525"
     CDS             1680..>1979
                     /locus_tag="VKJ77_25525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004198743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC48702.1"
                     /translation="MLRVLLVTDTDKPIGDLRQALARLGYDMLAEVATPAALPKVVEE
                     QRPDVVIIDTESPSRDTLEQLAVMNETAPRPVLMFSNDGDQQLIHAAVGAGVSAYL"
BASE COUNT          390 a          595 c          599 g          395 t
ORIGIN      
        1 ctttgtctgc cattgtcttt ccagaaaaac aaaaaggcgt cccgcgaacc cagccgatga
       61 ctgagttcag gggacgccgt tgtccaataa gcccgtcatg ggccactgct gaagtcttgc
      121 aatgaaactg gaccgtcgtt gatccatgga cgctctgttt gcaagggcca tgccatgcgc
      181 ggcacctcta tatttggcgt gcgtttgcgg gcggcaccac attttcagtc gattgcgggc
      241 ggtgcatttt gatgcactgc cgcacactcg cggtgcgaca cagcactgtc tgcgtgcgag
      301 tggaacgcca ccttgcccgt ccttcttgat tcaccacgca aggcaatgaa cgacttgatt
      361 tgtgtgtacg cgcacgagtg gcgtggcttg acgttgcgtg cgcctcattg cccgcatgaa
      421 tacgttgccg tgcgcgctaa cgcgatactc gtctggcctg gatattgcct atgactggct
      481 gtgcgcggca acgatgtcgg gcgcgtggat atcacagtca tattgatgtg aatgccggta
      541 aacaccggcg actcaggaca acggcgtccc ttcgtgcaag agcacgagcg gatgccgttt
      601 ttcgttgggg cgccgtgttg tcgcatcgtc cagggcaggt catctgatct gcgcgaagcg
      661 cgacccatgc gacccgcggg gcttattccg agcttcgatc ttttaagcaa tgcggcgact
      721 gttgtgtttt ttcaagccgc caaaggacat cacgatgaca attggcaagg tcaccttgct
      781 tagcgccggt cccggcgatc tggacctgct cacgatcaaa gccgccaaag cattggcgct
      841 ggcggatatc gtgttgctgg acgatctcgc caatcccgag atcgtgtcgc ttgcgccaca
      901 agctcgcgtg atccgcgtgg gcaaacgcgg cggctgcaag tcgacaccgc aagcgttcat
      961 ccagcggctg atgcaacgct atgccctcaa aggcctgcat gtggttcgcg tgaagggcgg
     1021 cgacgccctg ctgttcggac gcgcgggcga agaactcaca gcactgcggc acgcgcagat
     1081 tccggtagag atcatcaacg gcatttcgtc aggctttgca gcggctgcga gtctcgggat
     1141 atcgctgacg catcgagaac attgccaggg agtgaccttc gtcacggcgc acaagcagga
     1201 tcacggcgaa ccgaattggg ccgcgctcgc ggcgaccggc acgacgctcg tgatctacat
     1261 gggcatgacg cgcatcgaaa gcctttgcca tgcgctgctc tcggcgctgc cggcatctac
     1321 ccctgcggca gtggttcagt gggcaggtac agcatccgag cggcgctggc tcggacagct
     1381 ggaccgcctg gctactgacg ccgtgaagga agatctggga agccccgccg tgattctcgt
     1441 tggcaatgcg attagcgaag cggtagattg ggtgactcac catgggaccg gcgctcttcc
     1501 cgtggacgaa catgccgcct ccaacgcatg gcaagaaatc actgaagcgg tccagcatgc
     1561 agcctgaccg gcgcaaaccg catcgagcag cgcaagcggt ctttacggag cacgctgaca
     1621 agccgccggc gagcattgcg gcaggccttc catgcatgaa ctattccggc gcctgaccca
     1681 tgcttcgcgt gctgctcgtc accgacaccg acaaacccat tggcgatctt cgccaagcgc
     1741 tcgcgcgcct gggctacgac atgctggccg aggtggcgac cccggcagca ttgcccaagg
     1801 tggtggaaga acagcgcccg gatgtggtga tcatcgacac tgaatcgcct tcacgcgata
     1861 cgctcgaaca acttgcggtg atgaacgaaa cagcgccacg cccggtcctg atgttcagca
     1921 acgacggcga ccagcaactg attcacgccg cggtcggtgc aggcgtgagc gcttatctt
//
LOCUS       DATGBK010001812         1770 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_68470, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001812 DATGBK010000000
VERSION     DATGBK010001812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68470"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..837
                     /gene="carB"
                     /locus_tag="VKJ77_25530"
     CDS             <1..837
                     /gene="carB"
                     /locus_tag="VKJ77_25530"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006222868.1"
                     /note="four CarB-CarA dimers form the carbamoyl phosphate
                     synthetase holoenzyme that catalyzes the production of
                     carbamoyl phosphate; CarB is responsible for the
                     amidotransferase activity; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase large subunit"
                     /protein_id="HMC48703.1"
                     /translation="SAELQQELRAQTVQMAMALKVVGLMNVQFAIQNGTVFVLEVNPR
                     ASRTVPFVSKATGLALAKIAARCMVGMTLEAQGLVVNGAVKEVVPPYFSVKEAVFPFI
                     KFPGVDTILGPEMKSTGEVMGVGQSFGEAFVKSQLAAGVKLPKAGKAFISVRNSDKKA
                     AVPIGRELLELGFSLLATRGTAQVLTENGIRATMVNKVGEGRPHILDMIKNGEISLIV
                     NTVDEKRSAIQDSWSIRNGALQGRVTYYTTIAGARAACTGMRHIQGLIPYALQGLHQK
                     LV"
     gene            859..1332
                     /gene="greA"
                     /locus_tag="VKJ77_25535"
     CDS             859..1332
                     /gene="greA"
                     /locus_tag="VKJ77_25535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HMC48704.1"
                     /translation="MSNPLTVKGAGLLRAELQRLKTVDRHSVISAIAEARSHGDLSEN
                     AEYDAAKERQSFIEGRIAEIEGKLANAQVIDPKLLDADGRCVFGATVDLQAQASGDKV
                     TYQIVGDDEADIKHGKISIGSPIARALIGKYAGDVVEVQAPGGVREFEIIDVRYE"
     gene            complement(1388..>1770)
                     /gene="yhbY"
                     /locus_tag="VKJ77_25540"
     CDS             complement(1388..>1770)
                     /gene="yhbY"
                     /locus_tag="VKJ77_25540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008250351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HMC48705.1"
                     /translation="LQLSFAVTFNMKSLSPAERKLLKARAHALKPVVAIGNEGLSAAV
                     LKEIETSLKAHDLIKIRVTGDDREARQTLLGEICNRSGASPVQHIGKILVVYRESQKE
                     PAPAPKKRAARKQPRRTKRSFQNT"
BASE COUNT          366 a          498 c          565 g          341 t
ORIGIN      
        1 tccgccgagc tgcagcagga gttgcgagcg cagacggtgc agatggccat ggcgctgaaa
       61 gtggtcggcc tgatgaatgt gcagtttgca atccaaaatg gaacggtgtt cgtgctcgaa
      121 gtcaatccac gcgcttcgcg caccgtgcca ttcgtgtcca aggcgaccgg cctcgccttg
      181 gccaagatcg cggcgcgctg tatggtcggg atgacgctgg aagcacaggg cctggtggta
      241 aacggggcgg tcaaggaagt ggttccgccc tatttctcgg tgaaggaggc ggtattccca
      301 ttcatcaaat tccccggcgt cgataccatt ctcgggccgg agatgaaatc caccggcgag
      361 gttatgggcg tgggccagtc cttcggcgaa gccttcgtca agtcgcaact tgcggccggg
      421 gtgaaactgc ccaaagcggg caaagcgttc atcagcgtga ggaacagcga caagaaagcg
      481 gcggtaccga ttgggcgcga actgcttgaa ctcggtttca gcctgctcgc cacgcgcggc
      541 accgcgcagg ttctcaccga gaacgggatc agggcaacca tggtcaacaa ggtgggggaa
      601 ggccggccac acatcctgga catgatcaag aacggcgaga tcagcctgat cgtgaatacg
      661 gtggacgaaa agcgcagcgc catacaggac tcatggtcga ttcgcaacgg cgcgctccag
      721 ggccgcgtca cgtattacac tactattgcg ggtgcccgcg ccgcatgcac cggcatgcgc
      781 catatacagg gtctgattcc ctacgctttg cagggcctgc atcaaaagct ggtttaactc
      841 aattaggatt gtacgcatat gagcaacccc cttacggtca agggcgcagg gctgttgcgc
      901 gccgagttgc agcgcctgaa gacggtcgac cggcacagcg tgatcagcgc gatcgcggag
      961 gcgcgctcgc acggcgattt gtccgagaac gccgagtacg acgccgccaa ggagcggcag
     1021 agctttatcg aaggacgcat tgccgagatc gagggcaagc tcgccaatgc acaagtaatc
     1081 gaccccaagc tgctcgatgc cgacggccgt tgcgtgtttg gcgccacggt ggacctgcag
     1141 gcgcaggcga gcggcgacaa ggtgacttac cagatagtcg gcgacgatga ggccgacatc
     1201 aagcacggca agatttccat aggctcgccc atcgcccgag cgctaattgg caaatacgcg
     1261 ggggacgtgg tcgaggtaca ggcgcccgga ggcgtgcgcg aatttgaaat aatcgatgtg
     1321 cgctacgaat agcgatagcc gcccgcgttc gtaacgcttg cccggattgc ggcttgccct
     1381 tcgcggttca agtattctgg aagctgcgct tggtgcgccg cggctgtttg cgcgccgcgc
     1441 gctttttcgg ggcgggcgca ggttctttct gactttctcg ataaacaacc agaatcttgc
     1501 cgatgtgctg cacgggagag gcgccgctgc ggttgcatat ctcacccaac agggtctggc
     1561 gcgcttcacg gtcatcaccg gtcacgcgaa tcttgatcag atcgtgcgct ttgaggctgg
     1621 tttctatttc cttgagcact gctgccgaca ggccttcatt gccgatcgcg accacgggtt
     1681 tgagcgcatg cgcacgcgcc ttgagcagct tgcgttcggc gggggagagg gacttcatgt
     1741 taaatgtaac ggcaaaactt aattgtaaca
//
LOCUS       DATGBK010001813         2321 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_114206, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001813 DATGBK010000000
VERSION     DATGBK010001813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114206"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2321
                     /gene="napA"
                     /locus_tag="VKJ77_25545"
     CDS             <1..>2321
                     /gene="napA"
                     /locus_tag="VKJ77_25545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008161539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009325 - nitrate reductase complex
                     [Evidence IEA];
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0042126 - nitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HMC48706.1"
                     /translation="ADVTWSKAPCRFCGTGCGVSVGVKAGRVVATQGDPLAEVNRGLN
                     CVKGYFLSKIMYGEDRLTTPLLRMKDGKYAKDGEFTPVSWDQAFATMAEQFKRVLKAK
                     GPTAVGMFGSGQWTVFEGYAAVKLMKAGFRSNNLDPNARHCMASAVTGFMRTFGMDEP
                     MGCYDDIEQADAFVLWGSNMSEMHPILWTRVTDRKLSVPKTTVAVLSTFEHRSFDLAD
                     YRVIFTPQSDLAIMNYIANVIIKTNRVNKDFVSKHVTFKEGNADIGYGLRPDHPLQKA
                     AKNAGDPNGSKPMDFDAFARFVSKYDADYVTKLSGVPKAKLDQLAELYANPNIKVMSF
                     WTMGFNQHTRGTWANNMIYNLHLLTGKIATPGNSPFSLTGQPSACGTAREVGTFSHRL
                     PADMVVTNPEHRAHAEQIWRLPAGTIPEKPGYHAVLQNRMLKDGKLNAYWVMCNNNVQ
                     AGANLNEETLPGYRNPENFIVVSDVYPTATAVSADLILPAAMWVEKEGAYGNAERRTQ
                     FWHQLVESPDGARSDLWQLMEFSKHFKVEEVWPPELIAKKPELKGKTLYDVLYRNGQV
                     DKFTNKESNPNYKNDEAKAFGFYVQKGLFEEYATFGRGHGHDLAPFDAYHEARGLRWP
                     VVDGKETRWRYKEGSDPYVKAGTGYQFYGNKDGRAVIYALPYEPPAEAPDKDFPFWLA
                     TGRVLEHWHSGSMTRRVPELYRAFPNAVCFMHPDDAKALGFRRGDEVKVMSRRGFIRT
                     RIETRGRDKPPRGLVFVPWFDASQLINKVTLDA"
BASE COUNT          517 a          635 c          734 g          435 t
ORIGIN      
        1 aagccgacgt gacctggtcc aaagcgccgt gccgcttttg cgggacaggc tgcggtgtga
       61 gcgtaggagt aaaagccggc agggtagttg ccacccaggg cgatccgctg gccgaagtga
      121 atcgcggcct gaattgcgta aaaggttatt tcctctcgaa gatcatgtac ggcgaggatc
      181 gcctgaccac gccgctgctg cgcatgaagg acggcaagta cgcgaaggac ggtgagttca
      241 ccccggtttc atgggatcag gcattcgcca cgatggccga gcaattcaag cgcgtgctga
      301 aagcgaaggg gccgacagcg gtcggcatgt tcggctcggg ccagtggacg gtattcgaag
      361 gctacgcagc ggtgaaactc atgaaggcgg ggtttcgcag caacaatctc gatccaaacg
      421 cgcgtcattg catggcgtcg gcggtgaccg gtttcatgcg cacctttggc atggacgaac
      481 cgatgggctg ctacgacgac atcgagcaag ccgacgcatt cgtgctctgg ggatcgaaca
      541 tgtcggagat gcatccgatc ctctggaccc gcgtgacgga ccgcaagctg agcgtcccaa
      601 agacaacggt cgcggtgctg tcaacgttcg agcatcgcag cttcgatctt gccgactatc
      661 gggtgatctt tacgccccag tccgacctcg cgatcatgaa ttacatcgcg aacgtgatca
      721 tcaagacgaa tcgcgtgaac aaggattttg tctcgaagca cgtgacgttc aaggaaggca
      781 atgcggacat tgggtatggc ctgcgtcccg atcatccgtt gcagaaagcc gctaaaaacg
      841 cgggcgatcc gaatggatcg aagcccatgg acttcgacgc gttcgcgcgc ttcgtctcga
      901 agtacgacgc ggactacgtg acgaagttgt cgggcgtgcc caaggccaag ctcgatcagc
      961 tcgcagagct ttatgccaat ccgaatatca aggtgatgtc gttctggacc atgggtttca
     1021 atcagcacac gcgcggcacg tgggcgaaca acatgatcta caaccttcac ttgctgaccg
     1081 gcaagatcgc aacgccgggc aatagcccat tctcgctcac gggccaaccg tcggcatgcg
     1141 gcacggcgcg ggaggtgggg acgttctcgc atcggctgcc ggcggacatg gtggtgacta
     1201 acccggaaca cagggcgcac gcggagcaaa tctggcggct gcccgcgggc acgattccag
     1261 agaaacccgg ctatcacgcg gtgctgcaaa accgcatgct gaaggacggc aagctgaacg
     1321 cgtactgggt catgtgcaac aacaacgtcc aggcgggcgc gaacctgaac gaagagacgt
     1381 tgccgggata tcggaaccct gagaatttta ttgtggtgtc ggacgtgtac ccgaccgcga
     1441 cggccgtgtc cgccgacctg atcctgcccg cggcgatgtg ggtggagaag gagggagcgt
     1501 acggcaatgc cgagcgccgg acgcaattct ggcatcaact ggtggagtcg cctgatggcg
     1561 cgcgctccga tttatggcag ctgatggaat tctcgaagca cttcaaggtc gaggaagtct
     1621 ggccgccgga gttgattgcg aagaagccgg aactgaaggg caagacgctc tacgacgtgc
     1681 tctaccgcaa cggccaggtc gataaattca ccaataaaga aagcaatccg aattataaaa
     1741 acgatgaagc gaaggccttt ggtttttatg tgcagaaggg gctctttgag gaatacgcga
     1801 ctttcggccg tgggcatggt cacgatctcg ccccattcga cgcttatcac gaagcgcgcg
     1861 gtttgcgttg gccggtagtg gacggcaagg agacgcgctg gcgttacaag gagggatcgg
     1921 atccttacgt aaaagccggc acgggttatc agttctacgg caacaaggat ggccgggcgg
     1981 tgatttacgc gctgccgtac gagccgccgg ccgaagcgcc ggataaggat ttcccgttct
     2041 ggctcgcaac gggacgcgtg ctcgaacact ggcattccgg atcaatgacg cgccgcgtgc
     2101 cggagttata tcgggcattc ccgaacgccg tatgtttcat gcatcccgac gatgcaaaag
     2161 cactcggctt tcgacgcgga gatgaagtca aggtgatgtc gcgacgcggt tttatccgta
     2221 cgcggatcga gacacgcggt cgtgacaaac cgccgcgcgg tctggttttc gtaccgtggt
     2281 tcgacgcgag ccagctgatc aacaaagtga cgctcgacgc t
//
LOCUS       DATGBK010001814         2079 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_137342, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001814 DATGBK010000000
VERSION     DATGBK010001814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137342"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VKJ77_25550"
     CDS             complement(<1..251)
                     /locus_tag="VKJ77_25550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA 2,3-epoxidase subunit BoxB"
                     /protein_id="HMC48707.1"
                     /translation="MSTINYSEKIPNNVNLADDRTLQRALEQWQPNFLSWWGDMGPEG
                     SPNYDVYLRTAVSVDAGGWAHFDHVKMPDYRWGIFLTPG"
     gene            complement(317..2071)
                     /gene="boxC"
                     /locus_tag="VKJ77_25555"
     CDS             complement(317..2071)
                     /gene="boxC"
                     /locus_tag="VKJ77_25555"
                     /EC_number="4.1.2.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013428441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_process: GO:0010128 - benzoate catabolic process via
                     CoA ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-epoxybenzoyl-CoA dihydrolase"
                     /protein_id="HMC48708.1"
                     /translation="MAVAQSVEQTGVNGTASAGQSATTALQAETVAAPAGQRVDYRTE
                     PGRYKHWSLTFDGAVATLGINIAEDGGIRDGYKLKLNSYDLGVDIELHDALQRVRFEH
                     PEVRTVVVTSLKDRVFCSGANIFMLGLSSHAWKVNFCKFTNETRNGIEDTSRHSGIKF
                     LAAVNGACAGGGYEMALACDEIYLVDDRSSSVALPEVPLLGVLPGTGGLTRVTDKRKV
                     RHDRADIFCTIVEGVRGERAKQWRLVDEVVKPNVFKETVHARALELAAQSDRPAGAQG
                     IALTRIERTDRVDGLSYATVDISIDRARRTATFTAKAPSANPQSNIDEIVAAGANWWP
                     LQFARELDDAILCMRTNELDIGTWIFKTEGDARTLLAADATLLEHRDHWFVRETIGML
                     RRTLARIDVSSRTLFALIEPGSCFAGTFAELAFACDRSYMAALPSNEEEEPVLTLSEA
                     NFGLYPMITGQSRLGRRFYDETEPMNAVRQQIGQRVKPVEAERLGLVTASPDDIDWAD
                     EIRIAIEERAAMSPDALTGLEANLRFNGVETMETRIFGRLSAWQNWIFNRPNAVGEKG
                     ALKVYGKGSKAQFDLNRV"
BASE COUNT          371 a          640 c          643 g          425 t
ORIGIN      
        1 atgccgggcg tgagaaaaat gccccatctg tagtccggca tcttcacgtg atcgaaatgc
       61 gcccagccac cggcgtccac gctcaccgcc gtgcgcagat acacatcgta gttcggcgag
      121 ccttccggac ccatgtcgcc ccaccatgac aggaagttcg gctgccattg ttcgagcgcg
      181 cgctgcagcg tgcggtcgtc ggcgagattg acgttgttcg gaatcttttc gctgtagttg
      241 atcgttgaca tggttagttc cttaaagccc tgacgttgat gagcgcttga tgtgcgaggc
      301 cgggacgcaa gacgcgtcag acgcgattga ggtcgaactg cgccttgctg cccttgccgt
      361 acaccttgag agcgcccttc tcgcccactg cgttcggccg gttgaagatc cagttctgcc
      421 aggccgacaa acgcccgaag atgcgcgtct ccatcgtctc aacgccgttg aagcgcaggt
      481 tggcctcaag gcccgtgagc gcatccggcg acatggccgc gcgttcttca atagcaatcc
      541 ggatctcgtc ggcccagtcg atatcatccg gcgaggcggt gaccagtcca agacgctccg
      601 cttcgactgg cttgacccgc tgtccgatct gctggcgtac ggcgttcatg ggctccgttt
      661 cgtcgtagaa acggcggccg aggcgcgact ggccggtgat catcggatag aggccaaagt
      721 tcgcttccga gagcgtcagc accggttcct cttcctcgtt gctcggcaat gcggccatgt
      781 agctgcggtc gcaagcaaac gcgagttcgg cgaaggtgcc ggcgaaacat gaacccggct
      841 cgatcagcgc gaacagcgtg cgcgacgaga cgtcgatacg tgccagcgtg cggcgcaaca
      901 tgccgatggt ttcgcgcacg aaccagtgat cgcgatgctc gagtagtgtc gcgtcggcgg
      961 cgagcagcgt gcgtgcgtcg ccttcggtct tgaagatcca ggtgccgatg tcgagttcgt
     1021 tcgtgcgcat gcacaggatg gcgtcgtcga gttcgcgggc gaactgcagg ggccaccaat
     1081 tggcgcctgc cgcgacaatt tcgtctatgt ttgactgcgg attcgccgac ggcgctttcg
     1141 cggtaaaggt tgcggtacgg cgggctcggt cgatgctgat atcgacagtc gcatagctca
     1201 ggccatctac acgatccgtg cgctcgatac gcgtcagggc aatgccttgc gctccggccg
     1261 gccggtcgct ttgcgcggcc agttccagcg cacgggcgtg caccgtttcc ttgaatacgt
     1321 tcggcttcac gacttcatcg accagacgcc actgcttcgc gcgctcgccg cgcacccctt
     1381 caacaatggt gcagaagata tcggcgcggt cgtggcggac cttgcgttta tcggttacac
     1441 gagtgagacc gccggtgccg ggcagcacac ccagcagcgg cacttcgggc aacgcgacgg
     1501 acgaagagcg gtcgtcgacc agatagattt catcgcacgc gagcgccatt tcatatccgc
     1561 cgccggcgca cgcgccgttg accgctgcga ggaatttgat acccgagtgg cgcgacgtat
     1621 cttctatacc gttgcgcgtc tcgttggtga acttgcagaa gttgaccttc cacgcatgcg
     1681 atgaaagacc gagcatgaag atgttggcgc ccgagcagaa cacacggtcc ttgaggctcg
     1741 tcaccacgac cgtgcgcact tccgggtgct cgaaacgcac gcgctgcaaa gcgtcgtgca
     1801 attcgatatc gacacccaga tcgtacgagt tgagcttcag cttgtaacca tcacgaatac
     1861 cgccgtcttc ggcaatattg atgccgagcg tcgccactgc gccgtcgaac gtcagcgacc
     1921 agtgtttgta acggccgggc tccgtgcggt aatcgacgcg ctggccagcg ggcgccgcaa
     1981 cggtttctgc ctgtagtgcg gttgtggccg attggcctgc ggaggccgtg ccgttgacgc
     2041 ctgtctgctc cactgattgc gcgactgcca tggatgtct
//
LOCUS       DATGBK010001815         1566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_90830, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001815 DATGBK010000000
VERSION     DATGBK010001815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90830"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..683)
                     /locus_tag="VKJ77_25560"
     CDS             complement(<1..683)
                     /locus_tag="VKJ77_25560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005792847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HMC48709.1"
                     /translation="MGLPLLRKATRLMRAGAPAFIDGAAPVNVPVERTSTVRFESASS
                     HAALHKRRNAGEAVSTYGRHGTQTHRALEAAIGELEGARDVLLAPSGLSAISLVFIGL
                     LSPGDHVLVHDGVYGPVRERIEPLLTRLGVAFSYFSAADGLPHKLLQANTRLIYAESP
                     SSFLYGISDLPALADFAHEQGVLLAADNTWGAGLLYQPLALGADVFIQAVTKYLGGHS
                     DLMQGVVSTT"
     gene            complement(683..1309)
                     /locus_tag="VKJ77_25565"
     CDS             complement(683..1309)
                     /locus_tag="VKJ77_25565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012356702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine dioxygenase family protein"
                     /protein_id="HMC48710.1"
                     /translation="MTATSTPDQIGERQAAVSALLDHVRHIVATQGVTRAALDAISER
                     LQALAAHHAELFSAADFPPPQPGSGDTSTRYRLNPGEDGFALYLNSLLPGKTTIPHNH
                     DTWAVIAALDGEELNRVYKRTDDGTDPERATLDLEREVVVRPGTPIAFLPEDIHSIHV
                     TGATPTLHFHLYGRPLETLSGRLGYELDTGRVVRYNTTHMQRGTQAVG"
     gene            complement(1342..>1566)
                     /locus_tag="VKJ77_25570"
     CDS             complement(1342..>1566)
                     /locus_tag="VKJ77_25570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011494246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC48711.1"
                     /translation="CVLVTHEMRFAEDVSDEVFFTEGGVIVEHGAPSEIFGAPENERT
                     RLFLQRARGDDRRALRKRSRSGAALALATP"
BASE COUNT          304 a          481 c          485 g          296 t
ORIGIN      
        1 gtagtcgata ccacgccctg catcaggtcc gagtgtccgc ccagatattt ggtgacggcc
       61 tggatgaaga catcggcgcc cagtgcgagt ggttgataga gcaagcccgc gccccatgtg
      121 ttgtccgcgg cgagcaagac accttgctca tgcgcgaagt ccgctagcgc cgggagatcg
      181 ctgattccgt ataagaacga actcggcgac tctgcgtaaa tcaggcgcgt gttggcttga
      241 agcagcttat gcggcaaacc atccgctgcg ctgaagtagc tgaatgcaac acctagccgc
      301 gtaagcagcg gttcgatccg ttcgcgcacg ggcccataca caccgtcgtg caccaacacg
      361 tgatcgcccg gcgacaacaa gccgatgaac accagcgaga tcgccgataa acctgaaggg
      421 gcgagcagca cgtcacgtgc tccttccagt tccccgatgg ccgcctccag cgcccgatgc
      481 gtttgcgtgc catgccgtcc atacgtgctg actgcctcac ccgcgttgcg ccgtttatga
      541 agcgccgcgt ggctcgacgc gctctcgaac cgtaccgtgc tcgtgcgttc gaccggcacg
      601 ttgactggcg cggcaccgtc gatgaacgcc ggcgcaccgg cacgcatcag gcgcgtggcc
      661 ttacggagca ggggcaaacc catcagccaa ccgcctgcgt gccacgttgc atgtgggtcg
      721 tgttgtagcg aaccacacgt cctgtatcga gttcataccc gagacggcca gagagcgttt
      781 ccagcggccg cccatagaga tgaaaatgca aggtgggcgt tgcacccgtt acgtggatgc
      841 tatgaatgtc ttcgggcagg aacgcgatcg gtgtacccgg acgcaccacg acttcgcgct
      901 cgagatcgag ggtggcgcgt tcggggtccg taccgtcgtc cgtgcgctta tacacacgat
      961 tcagttcctc gccatcgagt gccgcgatga ctgcccacgt atcgtggtta tgcggaatag
     1021 tggtcttgcc gggcagcagc gagttcagat aaagcgcgaa cccgtcttcg ccgggattca
     1081 gccggtatcg cgtcgacgta tcgccgctgc ctggctgcgg cggcgggaaa tctgcggcag
     1141 agaacaactc ggcatggtgc gccgcgagcg cctgcagtcg ttcgctgatg gcatcaagcg
     1201 cggcgcgggt cacaccctgc gtagccacaa tgtgacgtac atggtccagc aatgcggaaa
     1261 ctgcagcctg gcgttcgcca atttgatcgg gtgtggaagt tgcggtcatg tcgggatggg
     1321 ttcgtaattg cctggtaaaa atcagggcgt agccaaagcg agagcagcac cgctgcgcga
     1381 gcgttttcgc agggcgcgcc ggtcatcgcc gcgtgcgcgt tgcagaaaca ggcgtgtgcg
     1441 ttcgttctcc ggtgcgccga aaatttccga cggtgcgccg tgctcgacaa tcacgccgcc
     1501 ctccgtgaaa aacacttcgt cgctgacatc ttcggcgaaa cgcatttcat gcgtgaccag
     1561 cacgca
//
LOCUS       DATGBK010001816         1862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_183543, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001816 DATGBK010000000
VERSION     DATGBK010001816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183543"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..586)
                     /locus_tag="VKJ77_25575"
     CDS             complement(<1..586)
                     /locus_tag="VKJ77_25575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004525087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HMC48712.1"
                     /translation="MTSTSTLTISVMVPTYRRPADLKRCLDALRAQARPADEVLVVAR
                     PEDDATHRALETELAANNPFLLRVIETGLGGQVAALNRGLDAARGDIIAITDDDAAPR
                     VDWLARIDQAFSNDQTLGALGGRDWVFERGALLDGERSEVGVIRRTGKICGNHHLGVG
                     APRTVLMLKGANMIYRRSAVGGLRFDTRLRGKGAQ"
     gene            complement(605..>1862)
                     /locus_tag="VKJ77_25580"
     CDS             complement(605..>1862)
                     /locus_tag="VKJ77_25580"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009895611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HMC48713.1"
                     /translation="SDEAKVYLEGSITYEAQISALKLQMATLDQRFESGHPALIVAQQ
                     QLSQLEAERARFSERFKNLPASEVKAVSLQRDAKVAEDIYVLLLNRVQELSVQKAGTG
                     GNVHIVDAALRPGAPVKPKKFLIMSAAVILGLILGTGLVFLRRAMFNGIVDPDKVERL
                     AGLPLVGLIPMSTEQVKLDAEAKRTERDRDRVSPILATMRPNDVCVEIMRSLRTSLQF
                     TLMEARNHTVMLTGPASGVGKSFLAVNLAVLLAASGKKVLLIDGDMRRGKLERSFGLE
                     RANGLAELLAGTIGLEQAIRTTRTPFLSFMPAGKRPENPSELLMSPRLQQYLDGLGRV
                     YDVVFIDTPPVLAVTDASIIGKLSGTNFLVMRSGAHNEMEISDAIRRLRSAGIPLHGA
                     IMNGMPARSRGYSRGHYAAVEDYLNV"
BASE COUNT          354 a          620 c          547 g          341 t
ORIGIN      
        1 gctgcgcgcc cttgccgcgc agacgcgtat cgaagcgcaa tccgcccacc gccgagcgtc
       61 gataaatcat gttcgcgccc ttcagcatca agaccgttcg cggcgcgccc acacccagat
      121 gatggttgcc gcagatcttg cccgtgcggc ggatcacgcc gacttccgaa cgctcgccat
      181 cgagcagcgc gccgcgttcg aatacccagt cacggccgcc gagcgcaccc agcgtttgat
      241 cattgctgaa ggcttgatca attcgcgcca gccagtcgac gcgcggcgcg gcgtcgtcgt
      301 cagtgatcgc gatgatgtcg ccgcgtgccg catcaagccc gcggttcagc gccgcgacct
      361 gcccgcccag acccgtctcg atcacgcgca gcaggaacgg attgttcgcg gccagttctg
      421 tttcgagcgc gcgatgcgtc gcgtcgtctt cgggacgcgc gacgaccagc acttcatccg
      481 ccgggcgagc ctgggcacgc agcgcgtcga ggcaacgctt caggtcagcg ggacgacgat
      541 atgtcggcac catcacggag atggtaaggg tcgaggtcga tgtcatgcag cgctccgctc
      601 gcgttcaaac gttcaagtag tcttcaaccg ctgcatagtg tccgcggcta tacccacgcg
      661 aacgtgccgg catgccgttc atgattgcgc catgcagcgg aatgcccgcc gaacgcaagc
      721 gccggatggc atcggagatc tccatttcgt tgtgcgcacc cgagcgcatc acgaggaagt
      781 tggtccccga aagcttgccg ataatcgatg catccgtgac agcaagcacc ggcggggtat
      841 cgatgaaaac cacgtcgtac acacgtccga ggccatcaag atattgctgc aggcgtggcg
      901 acatcagcag ctccgacgga ttctccggac gcttgcccgc cggcatgaaa ctcaagaacg
      961 gcgtgcgcgt ggtgcggatg gcctgctcga gtccgatcgt gccggcaagc aattccgcca
     1021 ggccgttcgc acgctccaga ccaaacgaac gttccagctt gccgcgtcgc atatcgccgt
     1081 cgatcagcag caccttcttg cccgacgccg cgagcaacac agcgaggttc acggcgagaa
     1141 agctcttgcc cacacccgac gccgggcccg tcagcatcac cgtatgatta cgcgcttcca
     1201 tcagcgtgaa ctgcagcgac gtgcgcaggc tgcgcatgat ttccacgcag acatcgttgg
     1261 gacgcatggt cgcgagaatg ggtgagacac ggtctcgatc acgctccgtg cgcttcgctt
     1321 ccgcatctag cttcacctgc tccgtgctca tgggaatgag accgaccagc ggcaaccctg
     1381 ccaggcgctc gaccttgtcc ggatccacaa tgccattgaa catggcgcgg cgcaggaaca
     1441 cgaggccagt cccgaggatc agcccgagaa tcacggccgc cgacatgatc aggaatttct
     1501 tcggcttgac cggtgcaccc gggcgcagcg cggcatcgac gatatgcacg ttgccgcccg
     1561 tccctgcctt ctgcaccgac agttcctgca cgcgattgag cagcagcacg tagatgtctt
     1621 cggccacctt cgcatcgcgt tgcagcgaca ccgcttttac ttcggatgcc ggaagattct
     1681 tgaagcgctc gctgaagcgc gcacgttcag cctccagttg gctcagctgc tgctgcgcga
     1741 cgatgagcgc cggatggccg ctttcgaagc gctggtccaa tgtggccatc tgaagcttca
     1801 acgcggaaat ctgcgcttcg taagtgatgc tgccttcgag gtaaactttc gcttcgtcgc
     1861 ta
//
LOCUS       DATGBK010001817         1935 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_45369, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001817 DATGBK010000000
VERSION     DATGBK010001817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45369"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1935
                     /locus_tag="VKJ77_25585"
     CDS             <1..>1935
                     /locus_tag="VKJ77_25585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HMC48714.1"
                     /translation="DGDLLHGPLDFRADFTTPRFSVPGRPANWTGQSYLSTGPVDLPM
                     LSQYVKMPFATYGGRFDNRIWIDFASGKLQSAGGDLTGSDIALRVRPSQPRLDVPIAN
                     FRWDLAQQDDEYTLHLANLHAELGQPPLADGTPVSRLLALHTLTGHYRAASLQRGQLF
                     GVSGDVVDLGILGEFARALPLPSKAQNDLIRFNPRGQIANYTLQTERPRPATHAQMLA
                     QRQTGAEPPMRYTVKGDLRGVSVQAQEPPPGLTINNHPRAGIPGVENLWGSIDADQDH
                     GSAVIDTKNTAITLPGVFDNPRLVLDQIDGRVTWTLTDAPGKPHKAITAHVETLHVKN
                     ADAEASATADYHNEGEGRGSLDLKANAARLNVTSLVHYLPTSISEKLRLYLGHALQAG
                     VSRNGTIEIHGDLTKFPYSRFPDAGQFRIVAPFSGGKFEPTPYPPKTMANGTPNVWPA
                     FDGIDGTFHLAENKLGFDISRGHYLGVSVVKTTGRIEDLGNRESKLLIDADAHGPITD
                     MLRYVEDSSLGALSHHVGTKIHATGNAALALQLEIPRVAPPPGVRPHVGYKGALAFNG
                     NDLAYGALPPLSDLKGRVRFGEKTASLDGLTAQFLGGNVRGTGGVKPDGSYAFDVNGR
                     IGADAAQSLNAHDQAQAAQIL"
BASE COUNT          375 a          650 c          595 g          315 t
ORIGIN      
        1 cgacggcgat ctgctgcacg ggccactcga cttccgcgcg gacttcacga ctccccgctt
       61 cagcgtgccc ggccggccgg cgaactggac gggccagtcg tatctgtcga ccggtcctgt
      121 cgatcttccc atgctctcgc agtacgtgaa gatgccgttc gcgacctacg gcggacgttt
      181 cgacaaccgc atctggatcg acttcgcgag cggcaagctg caatcagcgg gcggcgatct
      241 gaccgggtcc gacatcgcgt tgcgcgtgcg tccatcgcag ccgcgtctcg acgtcccgat
      301 cgcgaacttc cgctgggatc ttgcgcaaca ggacgacgaa tacacgctgc acctcgcgaa
      361 cctgcacgcg gaactcggcc agccgccgct cgccgacggc acgccggtgt ctcgcctgct
      421 ggcgttgcat acgctgaccg gccattaccg cgcggcgagc ttgcagcgcg ggcagttgtt
      481 cggggtatcg ggcgatgtcg tcgatcttgg catcctcggc gaattcgcgc gcgcgctgcc
      541 gttgccgtcg aaggcgcaaa acgatctgat ccgcttcaac ccgcgcgggc agattgccaa
      601 ctacaccctg caaaccgagc ggcccagacc ggcgacccat gctcaaatgc tggcccagcg
      661 gcagaccggc gccgagccgc cgatgcgcta cacggtcaag ggcgacttgc gcggcgtaag
      721 cgtgcaggcg caggaaccgc caccgggact gacgatcaac aaccatccgc gagccgggat
      781 tccgggcgtc gaaaacctgt ggggcagtat tgacgctgac caggatcacg gcagcgcggt
      841 tatcgatacg aaaaatactg cgatcacgct gcccggcgtc ttcgataacc cgcgtctcgt
      901 gctcgatcag atcgatggcc gcgtgacctg gacgctgacc gacgcgcccg gcaagcccca
      961 caaggcgatc accgcgcacg tggaaacgct gcacgtcaag aacgcggacg cagaagcgag
     1021 cgcgacggcg gattaccaca acgaaggcga aggccgcggt tccctcgatc taaaggcaaa
     1081 cgccgcgcgc ctgaacgtga cgagcctcgt ccactatctg ccgacgagca tcagcgaaaa
     1141 attgcgtctg tatctgggcc acgcgttgca agccggcgtc tcgcgcaacg gcaccatcga
     1201 gattcatggc gacctgacga aattccccta ttcgcgtttc cccgatgccg gccagttccg
     1261 catcgtcgcg ccgttctcgg gcggcaagtt cgagcctacg ccctatccgc ccaagaccat
     1321 ggcgaacggc acgccgaatg tatggccggc gtttgacggt atcgacggaa cgtttcatct
     1381 cgccgaaaac aagctgggct tcgatatttc acgcggccat tatctgggcg tgagcgtggt
     1441 caaaaccacg ggacggattg aagacttggg caatcgcgaa tcgaagctgc tgatcgacgc
     1501 cgacgcgcac ggcccgatca ccgacatgct tcgttacgtg gaagacagct cgctcggcgc
     1561 gctctcgcac cacgtcggga cgaagatcca tgcaaccggt aacgccgcgc tcgcgttgca
     1621 actggaaatt ccccgggtcg cgccgccgcc cggcgtgcga ccgcatgtgg ggtacaaagg
     1681 cgcgctcgcg ttcaacggca acgacctcgc gtacggtgcg ttgccgccgc tgtcagatct
     1741 caagggacgg gtgcgcttcg gtgagaaaac cgcatcgctc gatggcctta cggcgcaatt
     1801 ccttggcggc aatgtgcgtg gcaccggcgg cgtgaaaccc gacggcagct acgccttcga
     1861 tgtaaacggc cgcataggcg ccgacgcagc ccaaagcctg aacgcgcacg atcaggcgca
     1921 ggccgcgcaa attct
//
LOCUS       DATGBK010001818         1936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_45377, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001818 DATGBK010000000
VERSION     DATGBK010001818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45377"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..650
                     /locus_tag="VKJ77_25590"
     CDS             <1..650
                     /locus_tag="VKJ77_25590"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC48715.1"
                     /translation="RDILFRAARAGLRLQVQCAGGGAIDKVLGIFAEIDREIPIRDKR
                     FVIEHCQFPSAENMKLCRELGVIPTSTTNFLWNYGSVYLRSFGQKMAADAIPFRNWLD
                     AGVPVAQSTDGRPYDPIFSFWQMLARRDGVTGHAFGLPGQKLTRVEALRLYTYNSARA
                     AFWEHRIGSLEPGKLADLVVLSDDIMTIDEERIRDAKVLATLLGGKPVHDSGLFN"
     gene            747..1316
                     /locus_tag="VKJ77_25595"
     CDS             747..1316
                     /locus_tag="VKJ77_25595"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HMC48716.1"
                     /translation="MIDMQNDFCAEAGYVEKVVGKDVSACRAVVPEVMALVEAARAQG
                     VPVYWIKANYDPERLPEGMRVKQQEKSSVVCCGTGSWGGEFYGVSSAPGEAVIEKSSY
                     SAFAGTEVERQLRERGIRTIVFAGVQTNVCVESSLRDAVCKGFYAVLASDCVASHTQP
                     LHDATLKNVQFLFGDVMDRQAIAAIWSAA"
     gene            1490..>1936
                     /locus_tag="VKJ77_25600"
     CDS             1490..>1936
                     /locus_tag="VKJ77_25600"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC48717.1"
                     /translation="MNKNSIPWGPAPRRQIDAPKTLADEAYQRIHDDIIRGVFAPNDK
                     LQPDALRERYDIGLSPVREALSRVALEGLAVTEGQRGFFVAPATRQELLDIADLRINF
                     SVMSLERSIRLGDDAWENRVVTTYYQLSKLENLTKREPRTFHDEWER"
BASE COUNT          374 a          554 c          628 g          380 t
ORIGIN      
        1 tccgcgacat cctgttccgc gccgcgcgag ccgggttacg gctgcaggtg caatgcgctg
       61 gcggcggcgc gatcgacaag gtgctcggca tctttgccga gatcgatcga gagattccga
      121 ttcgggacaa gcgcttcgtc attgaacatt gccagtttcc cagcgccgaa aacatgaagc
      181 tgtgtcgcga gctgggcgtc atcccgacga gcacgaccaa tttcctctgg aattacggat
      241 cggtatatct gcgcagcttc ggacagaaga tggcggccga tgccatcccg ttccgcaact
      301 ggctcgatgc gggcgtgcca gtggcgcagt ccacggacgg ccgcccctac gatcctatct
      361 tttcgttctg gcagatgctg gcgcgccgtg acggcgtgac gggccacgca tttggcttgc
      421 cggggcaaaa gctgacgcgc gtggaagcat tgcgactcta cacctataat tcagcacggg
      481 ccgccttctg ggagcatcgc atcgggtcgc tcgagccggg taagctggct gatctcgtcg
      541 tgctgtccga tgacatcatg accatcgatg aagagcggat tcgagacgca aaagtcctgg
      601 cgaccctgct cggcgggaag ccggttcacg atagcggatt gttcaactga gggcgaaggc
      661 ccgaaccaaa ttctggagtg gcgatgtcat cgacccttta ggataccgtt gagaagcggc
      721 tcaagccagc gcattcggcg gtcctcgtga tcgacatgca gaacgatttt tgcgccgagg
      781 ccggttatgt cgagaaagtc gtcggcaagg atgtcagcgc ttgtcgcgcg gtcgtcccag
      841 aggtgatggc actggtcgag gctgcgcgcg cgcaaggcgt gccggtctac tggatcaagg
      901 ccaactacga cccggagcgc ttgcccgaag gcatgcgggt caagcagcag gagaaatcca
      961 gcgtcgtgtg ttgcggaacc ggaagctggg gtggcgagtt ttacggcgtt tcgtcggcac
     1021 ccggcgaagc agtgatcgaa aagagcagct acagcgcgtt tgccggtacc gaggttgaac
     1081 ggcagctccg cgagcgaggt atccggacca tcgtatttgc cggcgtgcag accaatgtct
     1141 gcgtcgagag cagtctgcgt gacgccgttt gcaaggggtt ctatgccgtg ctggcgagcg
     1201 actgcgtcgc gtcgcatacc cagccgctgc atgacgcaac gctcaagaat gtccagttcc
     1261 tctttggcga tgtgatggat cggcaggcga tcgcggcgat ctggtcggcg gcctgaggcg
     1321 atgccggcgt cgggcgctga cggtaacccg ttcgctgacg aaggcctgcg gcttcggctt
     1381 gaccgcttgt tgattggctg aatttgcacg cgacaagccc aggaggctgc tatatcgtta
     1441 tgcacattgg tgttttgacg cagagacagc acgccctata gatgacgcca tgaacaaaaa
     1501 ctcgattccg tgggggccgg cgccgcgccg ccagattgat gcgccgaaga cgctggctga
     1561 cgaagcctat caacgcatcc atgacgatat cattcgtggc gtattcgcac ccaatgacaa
     1621 gctgcagccc gatgcattgc gggaacgcta cgacatcggc ctcagcccgg tccgcgaggc
     1681 gctgtcgcgt gtagctctgg aagggctcgc ggtcacggag gggcagcggg gattcttcgt
     1741 cgccccggcc acgcggcagg aattgctgga tatcgccgat ctgcgcatca atttctcggt
     1801 gatgtctctc gaacgctcga tccggcttgg cgacgatgcg tgggagaacc gtgtcgtcac
     1861 cacctattat cagctcagca agctggaaaa cctgaccaag cgggagcctc ggaccttcca
     1921 cgacgagtgg gagcgt
//
LOCUS       DATGBK010001819         2892 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322289, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001819 DATGBK010000000
VERSION     DATGBK010001819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322289"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /locus_tag="VKJ77_25605"
     CDS             <1..544
                     /locus_tag="VKJ77_25605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="topoisomerase C-terminal repeat-containing
                     protein"
                     /protein_id="HMC48718.1"
                     /translation="IKNWKLEFDFGQDSGGEDGEPVDFSEQTPVGACPKCQSRVYEHG
                     MSYVCENSVANPKTCDFRSGKVILQQEMSREQMTKLLEEGRTDLLTGFKSSRTGRNFK
                     AFLVKQPDGKIGFEFEKKEPKPGAKPAVKRGAAAATEAEDEGDGDVAVAAKKTTVKPA
                     AKKVAAKKVAAKKAPARKAS"
     gene            complement(868..1782)
                     /locus_tag="VKJ77_25610"
                     /pseudo
     CDS             complement(868..1782)
                     /locus_tag="VKJ77_25610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009893648.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            complement(2119..>2892)
                     /locus_tag="VKJ77_25615"
     CDS             complement(2119..>2892)
                     /locus_tag="VKJ77_25615"
                     /EC_number="4.1.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004611 - phosphoenolpyruvate
                     carboxykinase activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase
                     domain-containing protein"
                     /protein_id="HMC48719.1"
                     /translation="DVWWEGMTDTPPAHLIDWQGNDWTPESGKKAAHPNARFTAPAAQ
                     CPSIDADWENPAGVAIDAFIFGGRRSDTVPLVTEARNWNEGVYMAATMGSETTAAAAG
                     QQGVVRRDPFAMLPFCGYNMSDYFGHWLKVGERLARLDAKLPKFFCVNWFRKDADGKF
                     VWPGFGDNMRVLSWMIGRIEGTAHGEEHAFGLSPRFDDIDWGALDFTREQFERVISVQ
                     DSAWRAELELHDELFTKLAQGLPAELAETKAAIEKRVSA"
BASE COUNT          594 a          850 c          875 g          573 t
ORIGIN      
        1 aatcaagaac tggaagctcg agttcgactt cggtcaggat tcaggcggtg aagatggcga
       61 accggtggat ttctcggagc agacgccggt tggcgcgtgt ccgaagtgcc agtcgcgtgt
      121 gtacgagcac ggcatgagtt acgtgtgcga aaactcggtg gcgaatccga agacctgcga
      181 tttccgttcg ggcaaggtga ttctgcagca ggaaatgtcg cgtgagcaaa tgacgaagct
      241 gcttgaggaa ggacgcacgg atctgctgac cggcttcaag tcgtcacgca cgggccggaa
      301 cttcaaggca ttcctcgtga agcagcccga cggcaagatc ggcttcgagt tcgagaagaa
      361 agagccgaaa ccgggtgcga aacccgccgt caagcgcggc gcggcggcag ctacagaagc
      421 ggaagatgaa ggtgacggtg acgtcgccgt ggcagccaag aagacgactg tgaagcctgc
      481 ggcgaagaaa gtggctgcga agaaggttgc ggccaagaaa gcgccggctc gaaaagcaag
      541 ctagttttca gggccgtcaa gttaggcccg gtagcattaa aaaagcccgc gaatcattcg
      601 cgggcttttt tcgttcatca tgctggacaa cacttaacca ctcaggaagc ctcaccacag
      661 cggcctccgt cagaacggcg agggcatggc cggggtcgca cgcgagcgcg acttcgcagg
      721 cttgccaccg agcttgttgt catcggcggg aggcgcttca aatcgtgcac cgccttccgc
      781 ttccgcatag gccgcgtgcg cgaccagcgg ctcggaatca cgctcatcaa ttgccggcgc
      841 acccggcttg acgatcccat ccttcaccca ctgttcgcca agctgatgat tcggcgtctg
      901 gctgaaatgc tcgacaaggt gatcgatgaa cgtgcgcacc ttcgcgggca aatggcgccg
      961 gctcggatac gcgacgttga tctcgacctg tggcagcgcg tagtcgctca ggaggcgcac
     1021 cagcttgccg cgcgtggtgt cgttgccgat caggtagctc ggcaggatcg cgatacccat
     1081 gccgagcagc gcgaactggc gcagcatctc ggtattgttc gcgacgatca cattcgtcgg
     1141 ccgcacgcgc acttcgcctt ccgggccggt gaacacgcgc tcatcgccga aatattcgga
     1201 cggcaaactc agcgacggat gttcggacag gtcttccggc cgcgtcggca cgccatgtct
     1261 ttcgagatat tccggtgtgg cgcacacggt caggcaaccg gtcgtgaggc gtcgcgtgac
     1321 aatgctcgcg ctgcgcatct ggcgcgcgat cacaatgccc acgtcgaagc cctcttccac
     1381 cagatcgact tggcggtcga ccagcgtgac gtccggcacg actttcggat aacgttgcgt
     1441 ataggtctgg agcaccggcg cgaggttgtg caggccaaac acgacgggtg cgacaattcg
     1501 tagcgatcca accggctcgt ggttacgtgc aaccaccatt tgttcgacat cttcgagctc
     1561 gtcgaggatc tggcgggcgc gttccaggta cacctggccg gactccgtca gcgacaggct
     1621 gcgcgtggtg cggttgagca ggcgggtgcc cagacgcccc tccaggtcag cgatatgacg
     1681 tgtcgccact gcattcgaga tatccattgc gccggccgcg cgagcaaaac tgccgagatc
     1741 cgccactcgg acgaatactt tcatcgactg caaatgatcc atgagacaac tcctgctgct
     1801 agacggcctc ttttaaattc cagaagcaat tcggaattat cctaggactc ccgttttcgt
     1861 gcagaagttg ctttaaatgt gactttttct gacaaaagat ttcggcttta ccattcggta
     1921 aggtgaaaca cgacgcattg ttgctgaatt cggaacgatg tcgctatcca gtaagcgccg
     1981 acatcattct gaaaagctgg caaaggcaat tttgacgcag tacggcggga aatgcataag
     2041 ggccgctaat gcggccctta tttcatcgat tatgtcgact tccgtcacta atcgcattaa
     2101 tcgagttgca accgaaaatc aggccgatac cctcttttcg attgcggctt tcgtctccgc
     2161 aagttcggca ggcagtcctt gggcgagttt cgtgaataac tcatcgtgta attcgagctc
     2221 agcgcgccat gccgagtcct gcacggagat cacgcgttcg aactgctcgc gggtgaaatc
     2281 gagtgcgccc cagtctatgt cgtcgaagcg cggcgagagg ccgaacgcgt gttcctcgcc
     2341 gtgagcggtg ccttcaatac ggccgatcat ccagctcagc acgcgcatgt tgtcgccgaa
     2401 acccggccac acgaacttgc cgtccgcgtc cttgcgaaac cagttcacgc agaagaactt
     2461 cggcagtttg gcgtcgaggc gcgccagtcg ttcgcccact ttcagccagt ggccgaaata
     2521 gtcgctcatg ttgtagccgc agaacggcag catggcgaac gggtcacgcc tgaccacgcc
     2581 ctgctggccg gcggcggcag cagtggtttc cgagcccatg gtcgcggcca tgtagacgcc
     2641 ctcgttccag ttgcgcgctt ccgtgacgag cggcacggtg tcggagcggc ggccgccgaa
     2701 gataaacgca tcgattgcca cgccggcggg attttcccaa tcggcgtcga tagacggaca
     2761 ttgcgcagcc ggcgccgtga aacgggcgtt cggatgcgct gccttcttgc ccgattcggg
     2821 tgtccagtca ttgccctgcc agtcgatcag atgcgccggc ggcgtgtcgg tcatgccttc
     2881 ccaccagacg tc
//
LOCUS       DATGBK010001820         1539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322296, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001820 DATGBK010000000
VERSION     DATGBK010001820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322296"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..449
                     /locus_tag="VKJ77_25620"
     CDS             <1..449
                     /locus_tag="VKJ77_25620"
                     /inference="COORDINATES: protein motif:HMM:NF015665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP binding domain-containing protein"
                     /protein_id="HMC48720.1"
                     /translation="VAVNDSRKRAMARKVANALGGELRGKTVAVLGLTFKPNTDDMRD
                     SPSIPLVTALQDMGAKVRAFDPVGMEQAKSFMKDVKFCNDAYVCAEGASALVIVTEWE
                     QFRALDFKRLKSVMTQPVLVDLRNIYLPEEVARHGFVYESVGRVRK"
     gene            566..>1539
                     /locus_tag="VKJ77_25625"
     CDS             566..>1539
                     /locus_tag="VKJ77_25625"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HMC48721.1"
                     /translation="MRTFDTTLPIDDALPRLTVALRADNAAVLVAPPGAGKTTRVPLV
                     LLDEPWAKDKKILLLEPRRLAARAAAARMVSTLGEQVGDTVGLRVRFGSKISNRTRIE
                     VITEGVFTRLILDDPSLEGIGAVLFDEFHERSLDADLGLALARDVQLALREDLKILVM
                     SATLDGARVSALLGDAPVVASEGRAFAVETRYLGRDPRVPIERQVADAATRALRAETG
                     SLLVFLPGAAEIRRTETQLEERIDDRNVDVVTLFGALDAREQDRAISPAPAGRRKLVL
                     ATSIAETSLTIEGVRVVIDSGLARVPRYEPDVGLTRLETVRVSRAAAD"
BASE COUNT          270 a          474 c          501 g          294 t
ORIGIN      
        1 tggtggcggt caatgactcg cgcaagcgcg caatggcgcg caaggtcgcc aacgcgctgg
       61 gtggcgagtt gcgtggcaaa acagtggccg tactgggtct cacgttcaag ccgaacaccg
      121 acgacatgcg tgactcgcca tcgataccgc tggtgactgc cttgcaggat atgggcgcca
      181 aggtgcgcgc cttcgatccg gtcggcatgg aacaggccaa gtcgttcatg aaggacgtca
      241 agttttgcaa cgacgcctat gtctgtgccg aaggcgcctc ggcactggtg atcgtcaccg
      301 aatgggagca gttccgcgcg ctcgacttca aacggttaaa gtcggtgatg acgcagccgg
      361 tgctggtcga cctgcgcaac atttatctcc ctgaggaagt cgcccgtcac gggtttgtct
      421 atgaaagcgt gggacgggtg cggaaatgat ttttcataaa agttattgtc ccccgcgcaa
      481 gcgggggacc cggtaaccgc cgacatcgct atatcattta tgcccgggtt tactggatcg
      541 cccgcttgcg cgggcgctga agataatgcg taccttcgac acaacacttc ccatcgacga
      601 cgcgcttccg cgtctcaccg tcgcgttgcg cgcggacaat gccgccgtgc tagtggcgcc
      661 gcccggcgcc ggcaagacca cgcgcgtgcc tttggtgctg ctcgacgagc catgggccaa
      721 ggataaaaag attttactgc tggagccgcg ccggctcgcc gcccgcgccg ccgccgcccg
      781 catggtttcg acgctcggcg agcaagtcgg tgacacggtc ggcttacgcg tgcgcttcgg
      841 ctccaagatt tcgaaccgca cgcgcatcga agtgattact gaaggcgtgt tcacgcggtt
      901 gatcctcgac gatccttcgc ttgaaggtat cggcgctgtg ctattcgacg aattccatga
      961 acgctcgctc gatgccgatc tgggactagc tctcgccagg gatgtccaac tggccttgcg
     1021 cgaggacctc aaaattctcg tgatgtcggc aacgctcgac ggcgcacggg tgtcggcgct
     1081 tctgggcgat gcgccggtgg ttgccagcga aggccgcgcc tttgcggtgg agacgcgcta
     1141 tctcggccgc gatccccgtg tgccgatcga gcgccaggtg gccgacgcgg cgacgcgcgc
     1201 gttgcgcgct gaaaccggct cgttgctggt gtttctgcca ggggcggccg agatccgccg
     1261 caccgaaacg cagctcgagg agcgcatcga tgatcgaaac gtcgatgtcg tgacgctgtt
     1321 tggagcgctc gatgcgcgcg agcaggaccg cgccatttct cccgcgccgg ccgggcgacg
     1381 caaactggtg cttgcgacat cgatcgcgga aacttcgctc accatcgaag gcgtgcgcgt
     1441 ggtgatcgac agcgggctcg cgcgcgtgcc gcgctacgaa cccgatgtgg gccttacaag
     1501 gctggaaacc gtgcgggtgt cgcgtgccgc cgccgacca
//
LOCUS       DATGBK010001821         1887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_160498, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001821 DATGBK010000000
VERSION     DATGBK010001821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160498"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /locus_tag="VKJ77_25630"
     CDS             <1..409
                     /locus_tag="VKJ77_25630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017332608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC48722.1"
                     /translation="CRYADFDLYVANYNQTLINALNDVATQIASIRSVDQQTSDATRA
                     LDASTHAYQLAVIRYKAGLSQQLQVLTADQNRLANEQTVTNLRMKRRDLQLGLIKALG
                     GGFDAADTNLAIDGQTSKSAPSQTASAASKTAN"
     gene            452..1714
                     /locus_tag="VKJ77_25635"
     CDS             452..1714
                     /locus_tag="VKJ77_25635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007182291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HMC48723.1"
                     /translation="MSDPQQNAAAVPAPKSNNTKRRVLMSLIVLVVIIAAIAYGLYYF
                     LIARFHQSTDDAYVNGNIVQITPQVVGTVISVNADDTQTVKMGDPLVVLDPADSKVAL
                     DQAEANLAQAVRQVRTLFVNDNQYAAQVALRQSDLSRAQDDLRRRMTIAQTGAVSGEE
                     ISHAKDAVRAAQASLNAAQQELQSNRSLTSNTTIASHPNVLAAAAKVRDSYINYARNT
                     MPAPVTGYVAKRSVQVGQRVSPGNPLMAIVPLNGVWVDANFKEVQLTHMRIGQPVELT
                     ADVYGSGVVFHGKVIGFSAGTGSAFSLLPAQNATGNWIKVVQRLPVRIGLDPQELEKH
                     PLRIGLSMNVDVTIKDENGGQLGTAPNTVYQTDVFAKYGDQADAEIARIIEANEGASG
                     PGTGAGGAQKTSKDSVQPASKQDLAKLM"
BASE COUNT          399 a          603 c          570 g          315 t
ORIGIN      
        1 gtgccgttac gcggactttg acctgtacgt cgccaactac aaccagaccc tgatcaatgc
       61 gctgaatgac gtcgccacgc agatcgcatc gatccgttcg gtcgatcagc agaccagcga
      121 tgccacgcgc gccctcgatg cctcgacgca tgcgtatcag ctcgccgtga ttcgctacaa
      181 agcgggtttg tcgcagcaac tgcaggtgct caccgccgat cagaaccggt tggcgaacga
      241 gcagaccgtg acgaatctgc gcatgaagcg ccgtgacctg caactgggtc tcatcaaggc
      301 gctcggcggc ggttttgacg ccgcggacac gaacctggcc atcgacgggc aaacgtcgaa
      361 aagcgcaccg tcgcagaccg cgtcggctgc gtccaagaca gccaactgaa tcgactagca
      421 gcaacccaag acagagaata cggagccatt catgagcgac cctcaacaaa acgccgcagc
      481 cgtgccggcg cccaaatcca acaacaccaa gcgccgggtg ctgatgagcc tgatcgtgct
      541 ggtcgtgatc atcgcggcta tcgcttacgg gctgtactac ttcctgatcg cgcgtttcca
      601 ccaaagcacg gatgacgcct atgtgaacgg caacatcgtg cagatcacgc cgcaagtggt
      661 cggcacggtg atctcggtga acgccgacga cacgcaaacc gtgaagatgg gcgacccgct
      721 cgtcgtgctc gatcccgccg actccaaggt cgcgctcgat caggccgaag cgaatctcgc
      781 gcaggcggtg cgccaggtgc gcacgctgtt cgtcaacgac aaccagtacg cggcgcaagt
      841 cgcgttgcgt cagtcggatc tctcgcgtgc acaggacgac ttgcgccgcc gcatgacgat
      901 tgcgcagacg ggcgcggttt cgggcgaaga aatttcccac gccaaagatg ccgtgcgtgc
      961 cgcgcaagcc tcgctcaacg ctgcgcagca agagcttcag tcgaaccgtt cgctgacatc
     1021 gaacacgact atcgccagcc atccgaacgt gctcgccgcc gccgcaaagg tccgcgattc
     1081 gtacatcaac tacgcgcgca acaccatgcc ggcgccggtg acgggttatg tcgcgaagcg
     1141 ttcggtgcag gtcggccagc gcgtctcgcc gggcaatccg ctgatggcga tcgtcccgct
     1201 gaacggcgta tgggtcgatg ccaacttcaa ggaagtgcag ctcacgcata tgcgcattgg
     1261 ccagccggtt gaactcaccg ccgacgtgta cggctccggc gtcgtgttcc acggcaaggt
     1321 gatcggcttc tcggcaggca cgggctcggc gttctcgctg ctgccggcgc aaaacgcgac
     1381 cggtaactgg atcaaggtcg tgcagcgtct gccggtgcgg atcggactcg acccgcagga
     1441 acttgagaag catccgctgc gcatcggttt gtcgatgaac gtggacgtga cgatcaagga
     1501 cgagaacggc ggccaactcg gcactgcccc gaacaccgtg taccagaccg acgtgttcgc
     1561 caagtacggc gaccaggccg acgccgaaat cgcccgcatt atcgaagcga atgaaggcgc
     1621 gtcagggccg ggtacgggcg caggcggtgc gcagaagaca tcgaaggaca gcgtgcagcc
     1681 ggcgtcaaag caagatctcg ccaagctgat gtaagcgctg gaacaccgga accgtcatat
     1741 gtctcaacca accgccgctc atgcgccgct agagggcgcg aaactcgtga tcggtacgat
     1801 cgcggtttca ctcgcggtgt tcatgaacgt gctcgatacg tcgattgcca acgtgtccat
     1861 tccgtcgatc tccggtgacc tcggggt
//
LOCUS       DATGBK010001822         3174 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_299496, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001822 DATGBK010000000
VERSION     DATGBK010001822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3174
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299496"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VKJ77_25640"
     CDS             <1..279
                     /locus_tag="VKJ77_25640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide dioxygenase"
                     /protein_id="HMC48724.1"
                     /translation="GRWLDAIVAKHPNVSRTVFYEKTHADDRPGTDFDFAGRLDFARI
                     ADKTLLPDADYYLCGPVPFMRAQQDALMAAGVSKARVRTEIFGSGEAA"
     gene            complement(349..1422)
                     /gene="aroG"
                     /locus_tag="VKJ77_25645"
     CDS             complement(349..1422)
                     /gene="aroG"
                     /locus_tag="VKJ77_25645"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HMC48725.1"
                     /translation="MPPHNTDDVRIRELKELTPPAHLIREFACAEPVSNLIYNSRQSM
                     HRILHGMEDRLIVIVGPCSIHDTKAALEYAGRLVEERKRFAGELEIVMRVYFEKPRTT
                     VGWKGLINDPYMDNSFKINDGLRTARELLLRINELGLPAGTEYLDMISPQYIADLISW
                     GAIGARTTESQVHRELASGLSCPVGFKNGTDGNVKIAVDAIKAASQPHHFLSVTKGGH
                     SAIVSTAGNEDCHIILRGGKAPNYDAESVNAACNDISKAGLAARLMIDASHANSSKKH
                     ENQIPVCADIGRQIAGGDERIIGVMVESNLVAGRQDLKEGCELTYGQSVTDACIGWED
                     SLSVLEGLSDAVKQRRVARGNGN"
     gene            1491..1676
                     /locus_tag="VKJ77_25650"
     CDS             1491..1676
                     /locus_tag="VKJ77_25650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009922080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48726.1"
                     /translation="MQKVVKKSGHKKTARLRWRFFGKLGFYTNDSPLSIRQRLEIPKK
                     VKIKLGGHDDFGRFGKN"
     gene            complement(1856..>3174)
                     /gene="tldD"
                     /locus_tag="VKJ77_25655"
     CDS             complement(1856..>3174)
                     /gene="tldD"
                     /locus_tag="VKJ77_25655"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HMC48727.1"
                     /translation="TRSEAWSLEEGIVKSGSFSIDQGVGVRAVSGDRTAFAYSDDLSA
                     ESIRQAAVATRAIAKAGGGKHKIKSASSLTGVFGRDLYLPSDPLTSLDATAKVKLLER
                     VEKMARGRDPRIVQVMAGLAGEYDVVLVARSDGALAADIRPLVRVSVTVIAEKDGRRE
                     MGSGGGGGRYDYGYFTDEILSHYVDQAVHAALVNLDARPAPAGAMTVVLGPGWPGVLL
                     HEAIGHGLEGDFNRKGSSAFAGRMGERVAAKGVTVVDDGTLPNRRGSLNIDDEGNPTQ
                     CTTLIEDGILKGYIQDSLNARLMKMPVTGNARRESYAALPMPRMTNTYMLNGDKDPGE
                     ILASVKNGLYAVNFGGGQVDITNGKFVFSASEAYMIENGKITYPVKGATLIGSGPESL
                     KYVTMIGNDMALDGGVGVCGKEGQSVPVGVGQPTLRIEKMTVGGTV"
BASE COUNT          593 a         1008 c          900 g          673 t
ORIGIN      
        1 ggccgatggc tggacgcgat tgttgcaaaa catccgaacg tgtcgcggac tgtgttctat
       61 gaaaagactc acgccgacga ccgcccggga accgatttcg acttcgcggg acggctggat
      121 ttcgcccgca tagccgataa aaccctgctt cccgacgccg actattatct ttgcggcccc
      181 gtgcccttca tgcgcgcgca gcaggacgcg ttgatggcgg cgggggtatc gaaggcacgg
      241 gtgcgtaccg agattttcgg ttccggcgag gccgcttagc gttagagttt taaagagagg
      301 gctgccggga agggcggccc ttcttctctc aaaccaccct caagccaatc agttcccatt
      361 cccccgcgcc acgcgccgtt gcttcacggc gtccgacagc ccttccagca cgctcaggct
      421 atcttcccag ccgatgcacg cgtcggtgac gctctgcccg taggtcagct cgcaaccttc
      481 cttcagatcc tgccgtccag cgaccagatt cgactccacc atcacgccga tgatccgttc
      541 atcgccgcct gcaatctgac ggccgatatc ggcgcaaacc gggatctggt tctcatgctt
      601 cttcgaactg ttcgcgtggc ttgcatcgat catcaggcgt gcggcaagcc cggccttgct
      661 gatgtcgttg catgcagcgt ttacgctttc cgcgtcgtag ttcggcgctt tgccaccgcg
      721 caggatgatg tggcagtctt cgttgccggc cgtcgatacg atggctgaat ggccgccctt
      781 cgtcaccgac aggaaatggt gcggctgcga cgctgccttg atagcgtcca ccgcaatctt
      841 cacgttaccg tccgtgccgt tcttgaatcc gaccgggcac gacaaacccg acgccagttc
      901 gcgatgcact tgcgattccg tcgtccgtgc gccgatcgca ccccatgaaa tcaggtcagc
      961 aatgtattgc gggctgatca tgtcgaggta ttcggtgccg gccggcagcc ccagttcatt
     1021 gattcgcagc agcaattcgc gcgcggtccg caggccgtcg ttgatcttga agctgttgtc
     1081 catgtacggg tcgttgatca gacctttcca gccgaccgtc gtacgcggct tctcgaaata
     1141 cacgcgcatc acgatttcca gctcgcccgc aaagcgcttg cgctcctcga caagacgccc
     1201 cgcgtattcc agagccgctt tggtgtcgtg gatcgaacac ggtccgacga ttacgatcag
     1261 gcggtcttcc atgccgtgca ggatgcggtg catcgactgg cgcgagttat agatgaggtt
     1321 cgaaaccggc tcggcgcagg cgaactcacg gatcaggtga gcggggggcg tcagttcttt
     1381 cagttcgcgg attcggacat cgtcggtgtt gtgcgggggc atgctggttc tccaggaact
     1441 cgttttggtg ctgtgttcgt cttgtcgaaa ggtccgacag atcagggaca gtgcaaaaag
     1501 tcgtcaaaaa aagtgggcat aaaaaaaccg ccaggctgcg ctggcggttt ttcgggaaac
     1561 ttgggttcta cacaaacgac tcacccctct cgatccgcca gcggcttgag ataccaaaaa
     1621 aagtaaaaat aaaacttggc ggacatgatg atttcggtcg ctttggtaaa aattgaacgt
     1681 ctagctttat aaccttaaac acgcgcggtt ggcaagttgt cagccgctag aatgcggata
     1741 atccgcgtca tggaggtaaa ttccgcagta aatgtgaacc aaagatgcgg ttttcccgcg
     1801 tgacgcgctc gtatgtctca caacgcgcgg cgcgggaaaa tcaggggcta tatgctcaca
     1861 ccgtgccgcc caccgtcatc ttttcgatcc gcaaggtcgg ctgacccacg cccaccggca
     1921 cgctctgacc ttccttgccg cacacgccca cgccgccgtc gagcgccatg tcgttgccga
     1981 tcatcgtcac gtacttcagc gattccgggc cgctgccgat tagcgttgca cccttcaccg
     2041 ggtacgtgat cttgccgttc tcgatcatgt acgcctcgga cgccgaaaac acgaacttgc
     2101 cgttggtgat gtcgacctga ccgccgccga aattcaccgc atacaagccg tttttcaccg
     2161 atgccaggat ttcacccggg tccttgtcgc cgttgagcat gtacgtgttg gtcatgcgcg
     2221 gcatgggcag cgcggcatac gattcgcgcc gcgcgttgcc cgttaccggc atcttcatga
     2281 ggcgtgcatt cagcgaatcc tggatatagc ccttgagaat gccgtcctcg atcaacgtcg
     2341 tgcattgcgt aggattgcct tcgtcgtcga tgttcagcga gccacgccgg ttcggcagcg
     2401 tgccgtcgtc tacaaccgtc acgcccttcg ccgccacccg ttcgcccata cgccctgcaa
     2461 acgccgagga gcctttacga ttgaagtcgc cttccagccc gtggccgatc gcttcgtgca
     2521 gcaacacgcc gggccagccc ggtccaagca cgacggtcat tgcaccagca ggcgccggac
     2581 gtgcatcgag attcacgagt gccgcgtgca cggcttgatc aacgtagtga gagagaattt
     2641 cgtcggtgaa atacccgtag tcgtaacgac cgccgccgcc gccgctgccc atttcgcgac
     2701 gtccgtcctt ttcggcgatc actgtcaccg atacccgcac gagcggccgg atgtcggcgg
     2761 ccagcgcacc gtcactacgg gcgaccagca cgacgtcgta ttcacccgcc agaccggcca
     2821 tgacctggac gatgcgcgga tcgcggccac gcgccatttt ctcgacacgt tcgagcaact
     2881 tcaccttcgc ggtggcgtcg agcgacgtga gcggatcgga cggcaggtac aggtcgcggc
     2941 cgaacacgcc ggtcagcgaa ctggccgatt tgatcttgtg cttgccgccg ccggcttttg
     3001 caatcgcgcg cgtggcgacc gccgcctgac ggatggattc cgccgacaag tcgtccgaat
     3061 atgcaaacgc cgtccggtca cccgacacgg cgcgcacgcc cacaccttga tcgatgctga
     3121 agctgcctga tttgacgatg ccttcttcca ggctccacgc ttcgctgcgc gtgg
//
LOCUS       DATGBK010001823         4640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_160530, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001823 DATGBK010000000
VERSION     DATGBK010001823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4640
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160530"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            449..1507
                     /locus_tag="VKJ77_25660"
     CDS             449..1507
                     /locus_tag="VKJ77_25660"
                     /inference="COORDINATES: protein motif:HMM:NF024039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC48728.1"
                     /translation="MYDSRPTSRSYGGPACILSAAATGLAAFIAREGGDADHILGVAG
                     TDLASIERPMTSMTLGVYCRALEQAALETGNENFGLRYGQQFQPSELGLLGYLAMASS
                     TVGEALRNMGSLFHHHQQSSQLRVVATGEFARIEYQIADLAISSRRQDAEFSISMFFN
                     ILRHAMGSNWRPREIHFEHVQPAAWAEHQDQFGAPVYFSQPTNALVLTRAELDAPMPN
                     GDARLLALLQYNLQQLGLATIQAESLIARVQAAIRQRLNDHEPTLDEICQSLGMATWK
                     LQRRLRTAGYTYQQLLLEERKELSLDYLRDPAIQISELSFLLGYSEISAFSRAFHRWH
                     GVSPTEWRRHQVSSRVLA"
     gene            2043..3962
                     /locus_tag="VKJ77_25665"
     CDS             2043..3962
                     /locus_tag="VKJ77_25665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014726241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HMC48729.1"
                     /translation="MKGLDIIRQSHERSRSFGLSDTMRPDYRVLGETDLLLKREQNRA
                     LCSHALPVIETLYGQIANTHSMVVLTDSEGLILHSLGDDDFLARADRVAVRPGALWSE
                     EQQGTNAIGTAIAEGDATMVFGDQHYLRANRFLACSSVPILDPFGELLGVLDVTGDCR
                     GHSRHTMALAKLSAQMIENHLFTSAFPEALRIRFHGRPEFIGTLMEGIAAFRADGRFL
                     SANRSAQFQFGLPLASLRAHTLSSLFNVSCGELFDRVCSGVGTPVERSISLCLHSGVN
                     VFASADLRRSTAVALSADSPDVIDVVARKRVPEQRPQQSKLSGLRYLMTGDAHVAALV
                     GRVRKVIGKNIPILIGGETGTGKDVLASAVHRDSPSSDGPFVAVNCASIPDTLIEAEL
                     FGYEEGAFTGASKRGACGKILQADGGTLFLDEIGDMPFSLQSRLLRVLQERTVTPLGS
                     TRAVPVDFALICASNRNLRERVTRGEFREDLYYRINGLLVTLPPLRQRTDLAVTVEKI
                     LRAERTTGEPLRVSPEVLAAFTRHPWPGNFRQLANVLRTACAMLDEHETCIELDHLSQ
                     DFFDDERNAENVQAASSPSGRDSSARLDDLALSAVAAALETHAGNVSAAARMLGVSRN
                     TLYRKMAALDETRRR"
     gene            4123..4640
                     /locus_tag="VKJ77_25670"
                     /pseudo
     CDS             4123..4640
                     /locus_tag="VKJ77_25670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403066.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
BASE COUNT          902 a         1369 c         1384 g          985 t
ORIGIN      
        1 gcttaggcgt gcgcggatct tgatcagtac gagcgggccg gcgggaaatg tgctgaaaat
       61 ccgtccgccg ttacctttcg gtcgcgatca tgtcgacatg ctaatcgacg cgacggccgc
      121 tctgctcgcg aagcgataat acgcagattc gtgagcgcgc atgggcgtat tagcctggtg
      181 gagcagccgg gtgccgttcc gactcgatgg cattcccgat tgtcccgatg cagcgccgtc
      241 ctcgatgctg ggagaagcga gatcgcgggt cgagacaggg tttttcctta gatactagcg
      301 tcaaagcagt tatccgaacg gcggcgcctg gggatgatca cctgtgaggc aatgcgttca
      361 gactcaaatg cttttccgac tcgccaatgt atttgatatg gtagccttga ctagtgttag
      421 cgcactttcg gtcacttgga tcaaagacat gtacgactcg cgtccaactt cgcgcagcta
      481 tggaggtccc gcttgcattc tgtcggcagc ggcgactggg ctcgccgcgt ttattgctcg
      541 tgaaggcgga gatgcagatc acatcttggg tgtggccggt acggatcttg cctcaatcga
      601 acggcccatg accagcatga cgctcggtgt ttactgccgc gctcttgaac aggccgcgct
      661 cgagactggc aatgaaaatt tcggtcttcg gtatggtcag caattccagc cgtcggaact
      721 cgggcttctc gggtatttgg cgatggcgtc gtcaaccgtg ggggaagcac tgcgaaatat
      781 gggcagtctc ttccatcacc accagcaaag ctcccagcta cgcgttgtag cgaccggaga
      841 gttcgctcgc atcgagtatc agatagcaga tttggccatc tcatcacgac gacaggacgc
      901 tgaattctcg atcagtatgt tcttcaacat cctgcgacat gcgatgggtt ccaattggag
      961 gcctcgcgag attcatttcg agcacgtcca acctgcggca tgggcagaac accaagatca
     1021 gttcggcgct cccgtgtact tttcgcaacc tactaacgcc ctcgtcctca cgcgggccga
     1081 actcgacgcg ccaatgccca acggcgatgc gcgccttctc gctctgttgc aatacaacct
     1141 gcaacaactt gggctggcta cgattcaggc tgaatcgctc attgctcgcg tccaggcggc
     1201 gattcgtcaa cgtttgaacg accacgaacc gactctcgac gaaatttgcc agtcgctagg
     1261 tatggcgacc tggaaacttc agcgccggct acgcaccgcg ggttacacgt atcaacaact
     1321 tctcctggag gagcgcaaag agctttccct agactacctc cgagaccccg caattcagat
     1381 atccgaactt tcttttctgc tcgggtactc agaaatcagc gcattctcgc gggcgtttca
     1441 ccgttggcac ggagtatctc cgactgaatg gcgacgccac caagtaagct cccgggtctt
     1501 ggcgtagtca acccaattct cgctgcgcct attccagcga ttctggcccc tgcccgcgcg
     1561 gtgtttaaac cttgcgcggc taggcgtatg ttacgttcga ccgggagtgt tgaaaccttc
     1621 tggtaacgac tccgagaggc tttgttggaa atagaaaatc atgagcaaag cgctccggtg
     1681 ttcgagattt ttcggacttt cacgggcacc ggcatgccga gatggttcat tcgggtcagg
     1741 gcacacacgg ctccatacct cgtttcgctg ctgcggcatc gttcgggcct tcatggcgtt
     1801 gcaagcgcca cccccggtcg agcgcgtgac tggctagact cggagtggac ccgggctaaa
     1861 cccggaattg aacgctgtag cagtggtaca ttgtctcgat cgaccacgcg acgggcgggg
     1921 ctgacgaccg actccttccg tgaatgtggg cgaacgagac aatggttatg aacccgatgt
     1981 caatcgaccg ttcaagcgga tcgagccgac ccgcgctgct ggccagcgat cataccggcc
     2041 gtatgaaagg gctggatatc atcaggcaat cgcacgaacg ttcccgcagc ttcggcctct
     2101 cggacaccat gcgtcccgac taccgcgtgc tcggcgaaac cgatctcttg cttaagcgcg
     2161 agcagaaccg cgcgctctgc tcgcatgcgc tgcccgtcat agaaaccctc tacgggcaga
     2221 tcgcaaatac gcacagcatg gtcgtactga ccgactccga agggctgatc ctgcattcgc
     2281 ttggcgacga cgatttcctc gcccgtgcgg atcgcgtcgc ggtgcggccg ggcgcgctat
     2341 ggagtgaaga gcagcagggc accaatgcga taggcacggc tatcgccgaa ggtgacgcca
     2401 cgatggtgtt cggcgaccag cattatctgc gcgcaaaccg gttccttgcg tgctccagcg
     2461 tgccgattct cgatccattc ggcgagttgc ttggcgttct cgacgtcacc ggtgattgcc
     2521 gcggccacag ccgtcacacc atggcgctcg ccaagttgtc tgcgcagatg atcgagaacc
     2581 atttgttcac cagcgccttt cctgaagcgt tgcgaatccg ttttcacgga cggcccgagt
     2641 ttatcggcac gctgatggaa ggcattgctg cattcagggc agatgggcgt tttttatcgg
     2701 ctaatcgcag cgcgcaattt cagttcggct taccgcttgc gtcgttgcgc gcgcatacgc
     2761 tgtcgtcgct attcaatgtc tcgtgcggcg agttgttcga ccgcgtgtgc agcggcgtag
     2821 gcacgcccgt ggaacgctcg atttcgctgt gcttgcacag cggcgtgaat gtctttgcca
     2881 gcgcggacct gaggcgctcg acggctgttg cactctcagc agatagcccc gatgtcatcg
     2941 acgtcgtcgc acgcaaacgt gtccctgaac agcggccgca gcagtcgaaa ctctccggcc
     3001 tacgctacct gatgactggc gacgcgcatg ttgcggcact cgtcggacgg gtacgcaagg
     3061 tgatcggtaa aaatattccg atcctgatcg gcggcgagac gggtaccggc aaagatgtcc
     3121 tcgcgagcgc ggtgcatcgc gactcgccga gtagtgacgg gccgttcgtt gcggtgaatt
     3181 gtgcgtcgat cccggacacg ctgatagaag cggagttgtt cggctatgaa gaaggcgcgt
     3241 tcactggcgc gtccaagcgc ggagcgtgcg gcaagatttt gcaagccgat ggcggcactt
     3301 tgttcctcga tgaaatcggt gatatgccgt tctcgttgca aagccgtttg ctgcgtgttc
     3361 tgcaggagcg tacggtgacg ccgctcggca gcacacgtgc cgtgcctgtg gatttcgcgc
     3421 tgatctgcgc gtccaaccgc aatctgcgcg agcgcgtcac gcgcggagaa ttccgcgagg
     3481 atctctatta ccggatcaac ggtctgctgg tgacgttgcc gccgttgcgc cagcgtaccg
     3541 atctggccgt gaccgtcgaa aagatcctgc gcgccgagcg tacgaccggt gaacccctca
     3601 gggtttcacc cgaggtgctg gcggcgttta cccgccaccc gtggccggga aacttccggc
     3661 aactcgcgaa cgtgctgagg accgcatgtg ccatgctcga cgagcacgag acgtgcattg
     3721 agcttgatca tctatcgcaa gatttcttcg atgacgaacg caacgcggag aacgtacaag
     3781 cggcctcctc gccgtctggc agggacagca gcgcgcgcct ggacgatctc gcgttgtcgg
     3841 ccgtcgcggc agcgcttgag acacacgccg gcaacgtctc ggcggcggcg cggatgcttg
     3901 gcgtatcgcg taatacgctc taccgcaaga tggccgcact cgacgaaacg cggcgtcgat
     3961 aacatcgccg tggaattgag acaaacgtct caacaacctc gatggtgcac tgcggtgtga
     4021 tctcccggaa cacgcatgct aaaacgtcat catgcgttta agttttcggg ttgcagcgtg
     4081 tcgtgaatgg cgcgagcgaa ccgaatctgc cggaggctct tcatgccgta tgtttcgcag
     4141 accagacaca tcgatcgcgt gcgcaacgtg atagagggcc gcatgagcag ccccggcgcc
     4201 gatgggtcac ggctcgcgtc ttcgtacaag cggtcgctgg agcaatatca tctcgatccg
     4261 ggcgcgacta tcggtccgcg catcctgacg gttcccgaat tacgcgatgt ccagcagcgc
     4321 gaagacaccg tgctgcgtgc atccggccaa tgtctttcgc gactgcacga agccgtacgg
     4381 gaagccgact actaagtgat gttgaccgat gcagagggcg tcactatcga ctaccgggtg
     4441 gatcgcgatc gccgctacga attcaagcgc gcgggtttgt atcccggttc gtgctggtcc
     4501 gagcgtgaag aggggaggtg cggcgttgct tcagtgctgc acgacgcaga ggcgatcacc
     4561 gtccacaaga ccgaccattt tcgcgcggcg ttcaccacgc tgacatgtag cgcgtcgcct
     4621 atcttcggcg tgcaaggcga
//
LOCUS       DATGBK010001824         5066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_253023, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001824 DATGBK010000000
VERSION     DATGBK010001824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5066
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253023"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..920)
                     /locus_tag="VKJ77_25675"
     CDS             complement(<1..920)
                     /locus_tag="VKJ77_25675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006218086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HMC48730.1"
                     /translation="MTVPEQHPLLAVSNLTIGFPDKTGAIKQVTHDVNLTLKAGESLA
                     LVGESGSGKTMVGRALLGLLPERAEIVSGTISFEGRDVLGNTPAQWLATRGTGIGMVF
                     QEPMVSLNPAIRIGDQLTEALMRRRSIARDAARVQAIAMLERVRVRDPVGCMKRYPHE
                     FSGGMRQRILLAAVMLLRPKLLIADEPTTALDCVVQKEVLDLMIELTREEGTALIFIS
                     HNLALVTAYTEQVLVMRRGSVVETGAVATVLARPSHEYTLKLLEALPRRADNEDALSP
                     ADSSAPPVIEVKDVAIDYRVPGLWFRKILAR"
     gene            complement(920..1753)
                     /locus_tag="VKJ77_25680"
     CDS             complement(920..1753)
                     /locus_tag="VKJ77_25680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013394333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48731.1"
                     /translation="MPSSPKRARRANLVIGAVLVGLLLLIAVVNLVYTPYGPLDVNIH
                     ARYAPPSLHHWFGTDEFGRDILSRIMSGAGVSTTVSVCSVLFALLAGTSIGAVCGYAG
                     GWFDRLAAMLIDALMAFPGLLLALGIMTVVGPSKWGVVVALGLAYTPSVSRIARGAAL
                     SLRQRDYVVASQTMGNSGAWTLLRHVLPHCVAPLLVFSTSLFGSALLAESALSFLGLG
                     VPAPEPTWGGMLADGRTAIDQAIWVVLFPGAAISLALFGINLFGDGVRDLLDPRMKGG
                     M"
     gene            complement(1761..2702)
                     /locus_tag="VKJ77_25685"
     CDS             complement(1761..2702)
                     /locus_tag="VKJ77_25685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006220838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48732.1"
                     /translation="MLSYIIKRISMAVPTVFIVTLLVFGMIRAIPGDPASLMLGDLND
                     PVLLQQMRHSFGLDQSIPAQFAIWVSHLLSGDFGMSIVRHQPVLELIRETFPVTAEIV
                     LAATFFACLIAIPAGLFAAWMQNRRGDLAVVMGSIMLVSIPSFWAGILLIWLFGVKLH
                     LLPTFGYQPFSQAGWGSFKYLVLPVIAVSLGEIAVVTRMMRASSIEVLRLEYIAHARA
                     KGLSERRVLLRHTLPNAFGPTLTVIGLVLGHLLAGGAVIETVFTLPGMGRLLVESIYS
                     RDYPVVQGCLLVIALLYVLTNLVVDLLYPIFDPRLKL"
     gene            complement(2711..4270)
                     /locus_tag="VKJ77_25690"
     CDS             complement(2711..4270)
                     /locus_tag="VKJ77_25690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006218083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48733.1"
                     /translation="MKRAAMTWTLAVAAALPASGWAQPSAAAPEFPEIRFAINTDTTT
                     SMPGNVLRNTFTDEILTNVVESLVALKSDSSIAPMLADSWDISPDGKQYTFHLRHGVV
                     FHNGTPFTSADVKWSYDYFMKPQSGYVCRGNYDGHRGPKVLAVTTPDPRTVVFELDRP
                     SALFLTHMTEPRCPLAILSPASLDKNGAWLKPVGTGPFVFSEWKQGQYVLLKPFAQYQ
                     SRIEPPSGLAGAKHPRANVRFVAVPDEAAQVSALMSGQIDMMHISENTRPPSDPHWHV
                     IAGPGADPAAFLMQTRDPLLADVRIRRAIALAVDLPGVVNAVSGGLARYNSSLTPDAE
                     ALYTSGDAVGYKQNLPEVKRLLAAAGYAGQTLTLETNRRYVHMYSSAVYMQSLLSQAG
                     IKVKLQVVEWGTQVNDFRSGHFQLMSFGYSARIEPALMYGDVLGDKSKNPMVQWENPK
                     ARALLRSIDGVTDPAARKQVFEQLHQMMMDDVPMIVLNDTPDLTLVSNRLLGVTTWPL
                     GLQRFSNVTKN"
     gene            complement(4888..>5066)
                     /locus_tag="VKJ77_25695"
     CDS             complement(4888..>5066)
                     /locus_tag="VKJ77_25695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012339810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48734.1"
                     /translation="LLGERFMVIQQAMGLPKSRGNAAAEYLRRFVEEMKASGFVVDSL
                     QRHKINGASVAPAS"
BASE COUNT         1043 a         1512 c         1605 g          906 t
ORIGIN      
        1 cgcgcgagaa tctttctgaa ccacaagccg ggcacccggt aatcgatcgc cacgtccttg
       61 acttcgatga ccggcggcgc ggatgagtct gctgggctca acgcgtcctc gttatcggcg
      121 cgccttggca gcgcttcgag cagcttcagc gtgtattcat gcgaagggcg tgccagcacc
      181 gtcgctactg cgcctgtttc cacgaccgac ccacgccgca tcacgagcac ttgttccgta
      241 taggccgtca ccaacgcaag attgtggctg atgaagatca gcgcggtgcc ttcctcgcgc
      301 gtgagttcga tcatcaggtc gagcacttct ttctgcacca cgcaatcgag ggctgtcgtc
      361 ggctcgtctg cgatcagcag cttcgggcgc agcaacatga ccgcggcgag caggatgcgt
      421 tgccgcatgc cgccggaaaa ctcgtgcggg tatcgcttca tgcagccgac cggatcccgc
      481 acgcgaaccc gttcgagcat ggcgatagcc tgcacacggg ctgcatcgcg cgcgatggaa
      541 cggcgccgca tcagcgcctc cgtcagttgg tcgccaatgc ggatggcggg gttgagcgag
      601 accatgggct cctggaacac catgccaatg cctgtgccgc gggtagccag ccattgcgcc
      661 ggcgtattac ccaggacgtc acgaccctcg aagctgatgg tccccgagac gatctccgca
      721 cgttccggca gcaagccgag caacgcgcgg ccgaccatgg tcttgccgct gccggactcg
      781 ccaacaaggg caagcgactc gcccgctttc aaggtgaggt tcacgtcatg cgtgacctgt
      841 ttgatcgcgc ctgttttgtc ggggaaacct atcgtcaggt tgctcaccgc cagcaatgga
      901 tgttgctcgg gaaccgtcat cacattcccc ccttcatgcg cgggtcgagc aggtcgcgca
      961 ccccatcgcc gaacagattg atgccgaaca aggcaagcga gatggccgcg cccgggaata
     1021 gcacgaccca gatcgcctga tcgatagccg tgcggccgtc ggccagcatg ccgccccagg
     1081 taggctcggg cgcgggcacg ccgagtccga gaaaactgag tgcgctttcg gcaagcagcg
     1141 ccgacccgaa cagtgaagtc gagaagacca gcagcggcgc cacgcagtgc ggcaggacat
     1201 ggcggagaag ggtccatgcg ccgctattgc ccatggtttg ggacgcgacc acgtagtcac
     1261 gctggcgcag cgacagcgcc gcgccgcgcg caatgcggct gactgacggc gtataagcca
     1321 agccgagcgc gaccaccacg ccccatttcg acggcccgac cacggtcatg atgccaagtg
     1381 cgagcagcaa gccggggaac gccatcagcg catcgatcag catggccgca agccggtcga
     1441 accagccgcc cgcgtaaccg cagacggcgc ctatcgacgt tccggcgagc aatgcgaaca
     1501 gcacggagca gacgctgacg gtggtactga cgccggcgcc cgacatgatc cgggacagga
     1561 tgtcccggcc gaattcgtcg gtgccgaacc agtgatgcag cgacggcggc gcataacgcg
     1621 catgaatatt cacgtcgagg ggaccgtagg gcgtatagac gagattgacc accgcgatga
     1681 gcagcaggag gccgacgaga acggctccga tcacgaggtt ggcgcgccgg gcgcgcttgg
     1741 gagaggaggg catgggcgag tcagagcttg aggcgtggat cgaagatcgg atacagcagg
     1801 tcgacaacga gattggtcag cacatacagc agcgcgatta caagaaggca tccctgcacg
     1861 acggggtaat cgcgcgaata gatgctttcc acgagcaggc ggcccatgcc cggcagcgta
     1921 aatacggtct cgatcacggc gcctcccgcg agcaggtgac cgagcacgag accgatcacg
     1981 gtgagcgtgg ggccgaacgc attgggcagc gtatggcgca gcagcacgcg ccgttccgac
     2041 aaacctttgg cgcgtgcgtg agcgatatat tccagtcgca ggacttcgat actgctcgct
     2101 cgcatcatgc gtgtcacgac cgcgatttct ccgagcgaga ccgctatgac cggcagcacg
     2161 aggtatttga acgatcccca gcctgcttgc gaaaacggct ggtagccgaa ggtaggcagc
     2221 agatgcagct tgacgccaaa cagccagatg agcaggatgc cggcccagaa actcgggatg
     2281 gaaaccagca tgatgctgcc catgaccacc gcgagatcgc cgcggcggtt ttgcatccag
     2341 gccgcgaaca agccagcggg aatggcgatc aggcacgcga agaaagtcgc cgcgagcacg
     2401 atctcggcgg tcaccggaaa ggtctcgcgg atcagttcca gtaccggctg atgccggacg
     2461 atcgacatgc cgaagtcgcc cgagagcaga tgcgacaccc agatcgcgaa ttgcgcgggg
     2521 atggactgat cgagaccaaa cgagtggcgc atttgctgca gcagcaccgg gtcgttgagg
     2581 tcgccgagca tgagcgacgc cgggtcgccg ggaatggcgc ggatcatgcc gaatacgagc
     2641 agggtcacga taaagactgt cgggaccgcc atcgatatgc gcttgatgat gtagctgagc
     2701 atcggctggc ctagttcttc gtcacgttgg aaaaacgctg caggcccagg ggccaggtcg
     2761 tcacgcccag caaccggttg ctcacaagcg tcaggtcggg tgtgtcgttg agcacgatca
     2821 tgggcacgtc gtccatcatc atctggtgca actgttcgaa gacctgcttt ctggcggcgg
     2881 ggtcggtcac gccgtcgatg ctgcgcagca gcgcgcgtgc cttggggttc tcccactgca
     2941 ccataggatt tttggacttg tcaccgagca catcgccgta catcagcgca ggctcgatgc
     3001 gcgccgagta accaaatgac atcaactgga aatgccccga acggaagtcg ttcacctggg
     3061 tgccccattc gaccacctgc aacttcactt tgatacccgc ctgggagagc agcgattgca
     3121 tgtacaccgc gctcgaatac atgtgcacat aacggcggtt ggtttctagc gtgagggtct
     3181 ggccggcata accggctgcc gcgagcagac gcttgacctc gggcaggttc tgcttatagc
     3241 ccactgcgtc gccggaggta tagagcgctt cggcgtccgg cgtcagcgat gagttgtagc
     3301 gtgccaagcc gccgctgacc gcgttcacta cgcccggcag atcgacggca agcgcaatcg
     3361 ctcgacggat gcgaacgtcg gcgagcaacg ggtcgcgcgt ttgcatcaga aatgcagcgg
     3421 ggtccgctcc cggtcccgcg atcacatgcc agtgaggatc ggatggcggc cgggtgttct
     3481 ccgatatgtg catcatgtcg atttgtccgg acatgagcgc ggagacttgc gccgcttcgt
     3541 ccggaacggc gacgaagcgc acgttcgccc gcggatgctt cgcgcctgcc agtccgcttg
     3601 gcggctcgat gcgcgactgg tattgggcga agggtttcag caggacgtat tgcccttgtt
     3661 tccactcgct gaatacgaac ggaccggttc ccaccggctt cagccacgcg ccgttcttgt
     3721 cgaggcttgc aggactcagg atggcgagcg ggcagcgtgg ttccgtcatg tgggtgagaa
     3781 agagcgcgga cggccggtcg agttcgaaca ccacggtacg cggatcgggt gtggtcacgg
     3841 caagcacctt cggacctcgg tgtccgtcat agttgccgcg gcagacgtag ccggactgcg
     3901 gcttcatgaa gtagtcatag ctccatttga catcggcgga ggtgaacggc gtgccgttgt
     3961 ggaacaccac gccatgacgc aagtgaaacg tgtattgctt tccgtccggc gagatgtccc
     4021 aactgtcggc aagcatgggt gcgatcgacg agtcgctctt gagcgccacc agcgattcga
     4081 ccacgttagt gaggatctcg tccgtaaacg tattgcgcaa cacgttgccc ggcatggacg
     4141 ttgtcgtatc ggtattgatg gcaaaacgga tttcgggaaa ctccggtgcg gcggcgctcg
     4201 gctgtgccca tccgctggcg ggcagggctg ccgcgactgc cagcgtccac gtcatcgccg
     4261 cgcgcttcat ggccgggatc cagcggtttc ccacgcggcg cgctgcaagc cggcgggggg
     4321 cggagacacg ggaattgcca tcaaaaagtc cttcgggaag gggattgcac aacgcttaac
     4381 catgcgatga atggatagga agcgatcgta gaagctcata tttgcgttgg gaagagcagt
     4441 cctgccgatc ggcggccgat attcggatcg cccgggaaaa cagcactaga cagtcgctta
     4501 ttgatgtgga tggcgcttgg gctggagtga ctgtgcggta agggaaaaca gggtatcgga
     4561 catgcagatc atgatcgtca gaagtgttcc ccaacagatg ccgtgttcag ccaggaaggg
     4621 tattgaacaa aaattaggaa accaaaataa aataatttat cggcctttta accgccaact
     4681 gaaaccacga tattccgtga aaataatact gatcgcgtta agcgccttcg gctgtggcct
     4741 tgtcgggagc gtgcatgcgc caagcagcgt gcccctttat gaattgctcg acgatggttt
     4801 cggtcggtgg ggcacatgcg cgcgattgaa ccgttgacac ttcgcgtgct tggccccgtt
     4861 gatgcttaga cagccgcgcc cgaaccatca ggacgcgggt gccaccgatg cgccgttaat
     4921 tttgtgccgc tgcaacgagt ccacaacgaa gcctgacgct ttcatctctt ccacgaaacg
     4981 ccggagatat tcagccgcag cgttaccacg gctcttcggc aatcccattg cttgctggat
     5041 caccatgaag cgctcgccga gcaacc
//
LOCUS       DATGBK010001825         3454 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_137491, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001825 DATGBK010000000
VERSION     DATGBK010001825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3454
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137491"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..109)
                     /locus_tag="VKJ77_25700"
     CDS             complement(<1..109)
                     /locus_tag="VKJ77_25700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010091617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HMC48735.1"
                     /translation="MQNLSAPELAEWLADTSRPAPVLLDVREPWEIETAK"
     gene            complement(289..942)
                     /locus_tag="VKJ77_25705"
     CDS             complement(289..942)
                     /locus_tag="VKJ77_25705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017332930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HMC48736.1"
                     /translation="MNIEQARFNMIEQQIRPWDVLDQDVLNLLSIVKRENFVPAAYRN
                     IAFADLEIPLPAGQHMLFPRVEARVLQELAVKKHEVVLEIGAGSGYMAALLAARGRSV
                     TTVEIESELAKLAEENLAANGVSNAQVVLGDGALGWKEGEPYDVICVSGGLPVMPQEF
                     LDQLKIGGRLAAFVGSAPVMKAQIITRVDEKQFRVADIFETLIPPLKNAVHPSRFKF"
     gene            complement(1113..1733)
                     /locus_tag="VKJ77_25710"
     CDS             complement(1113..1733)
                     /locus_tag="VKJ77_25710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009889701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HMC48737.1"
                     /translation="MHPRLTLAISIMEAFAIFAFAISGLIEARKRRLDAVGAFLVALA
                     TAFGGGTMRDVLLSRRPFYWVQHQDYVIVIFVMAIFAPFLLRTTTRLFDQRALLIADA
                     IGLGLFSISGTSIALDAEMPAFTAAMMGVVTGVFGGIMRDVLCNEVPLILRDSRPYAV
                     CAFAGCWLYLGLDWLGLEGVYNVLISTGFTLIARLVTLKLDVRLPH"
     gene            complement(1736..2590)
                     /locus_tag="VKJ77_25715"
     CDS             complement(1736..2590)
                     /locus_tag="VKJ77_25715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HMC48738.1"
                     /translation="MPKNLPHPNEPKLKRQRDDAPGAVTAPPKAAAPTPEELSAALKR
                     DGLAGLGALRNSLETAAAKRKIQRAAAVIAEREAVADADVFRRSIGEVAPLKVPPRMP
                     LPRVPPSPLPLQTRLDEEAVLHEALSDEYDPESLLDTDDSLSYCRHGVRQEVVRKLRR
                     GAWIVQAQLDLHGMRREEAREALSEFIRESVKRGLRCLRVIHGKGLGSIGREPVLKGK
                     VRAWLVQKEEVIAFCQARPHDGGAGAVLVLLQPGSSPQHHSHPQDRDHRPHRDHDSDH
                     RRDQRKGP"
     gene            complement(2863..>3454)
                     /locus_tag="VKJ77_25720"
     CDS             complement(2863..>3454)
                     /locus_tag="VKJ77_25720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC48739.1"
                     /translation="CATCDGFFYKNGEVAVIGGGNTAVEEALYLSGIAKKVTVVHRRD
                     KFRAEPILIDRLLAKEKEGLVEIKWNHVLDEVTGDASGVTGLRIKCTDTGTTSDVPLQ
                     GVFVAIGHKPNTDLFVGQLEMKNGYIITHGGLQGNATGTSIPGVFAAGDVQDHIYRQA
                     VTSAGTGCMAALDAQRYLESIDENPAVHSMSAEAER"
BASE COUNT          652 a         1071 c         1077 g          654 t
ORIGIN      
        1 gcttggcggt ttcgatttcc cacggttcgc ggacgtcgag caggacaggg gcgggacgcg
       61 atgtatcggc gagccattcg gccagttcgg gtgcggacag attttgcatg ggattccggt
      121 gaaagtggtt agcgacagcg agccgggcgg cccaatggtg ctacccgcac aaacaaaggt
      181 gcagcttgca acgtgacgct tcggactcgc cgcgtaacgg caaaattggc gccagggtta
      241 gtaccatgat tggcgccagc gggagtccga acatgaaacc aggtcgtgtc agaacttgaa
      301 gcgcgacggg tgcacggcgt tcttgagcgg cgggatcagt gtttcgaaaa tatcggcgac
      361 gcggaattgc ttttcgtcca cgcgcgtaat gatctgcgcc ttcatgaccg gtgcgctgcc
      421 gacaaacgcc gccagccggc cgccgatctt caactgatcg aggaattcct gcggcatgac
      481 cggcaggcca cccgagacgc agatcacgtc gtagggctcg ccctctttcc agcccagtgc
      541 gccgtcaccg agcacgacct gcgcattcga cacgccgttc gccgccaggt tttcctctgc
      601 cagcttcgca agttcggact cgatttcgac cgtggtgacc gaacggccgc gtgcagcgag
      661 caacgccgcc atgtaacccg aaccagcgcc gatctccagc acgacttcgt gctttttcac
      721 ggccagttcc tgcagcaccc gcgcttcgac tcgcggaaac agcatgtgtt ggccggcggg
      781 cagcggaatt tcgaggtccg cgaacgcgat gttgcgatac gcggccggaa cgaaattttc
      841 acgcttgacg atcgacagaa ggttcaggac gtcctggtcc agcacatccc agggacggat
      901 ctgctgttcg atcatattga aacgcgcttg ctcgatgttc atgttcagtc tgcgggtcga
      961 tcgaccgttg gggtggagtt gacgtaacga gttgacggaa atgcaatgcc ggaaataagg
     1021 cgaaaatcga ggatagattg tagcaaatag ccggcggctt tcgctggtac gtgtgggcgg
     1081 ggccggcgtc gcgatcccgc cgcgagcgcg gatcagtgcg gcagacggac gtccagcttg
     1141 agcgtgacca gccgtgcgat caatgtaaac ccggtcgata tcagcacgtt gtacacccct
     1201 tccagcccca gccagtcgag tccgagatac agccagcagc ccgcgaacgc gcataccgca
     1261 tacgggcgcg aatcgcgcag gatcagcggc acctcgttgc acagcacgtc ccgcatgatg
     1321 ccgccgaaca cccctgtcac cacgcccatc atggccgccg tgaacgcggg catctccgca
     1381 tcgagggcaa ttgacgtccc ggaaatgctg aacaggccca gtccgatggc atcggcgatc
     1441 agcagcgcgc gctgatcgaa caggcgtgtg gtcgtgcgca gcaggaaagg cgcaaaaatc
     1501 gccatgacga agatgacgat cacatagtcc tgatgctgga cccagtaaaa cggccggcgc
     1561 gacagcagca catcgcgcat cgtgccgccg ccaaaagcgg tggcgagcgc caccaggaag
     1621 gccccgacgg catccagccg gcgctttctc gcttcgatca acccggaaat cgcgaatgcg
     1681 aagatcgcga atgcctccat gatcgagatg gccagcgtga gcctgggatg cacggttacg
     1741 gtccctttcg ctggtcgcgc cggtggtcgg aatcgtgatc tctgtgaggg cgatgatccc
     1801 ggtcctgcgg atgactgtga tgctgcggtg agctgcccgg ctggagcagc acgagcacgg
     1861 cgccggcgcc gccgtcgtgt ggccgcgcct gacagaatgc gatcacttcc tctttctgca
     1921 cgagccacgc gcgcactttg cccttgagca ccggttcgcg tccgatcgac ccaagtccct
     1981 tgccgtggat cacgcgcagg cagcgcagcc cgcgtttcac tgattcacgg ataaattccg
     2041 acagtgcctc acgcgcttcc tcgcgccgca tgccgtgcag gtcgagctgc gcctgcacga
     2101 tccacgcgcc gcgccggagt ttgcgcacca cttcctgacg cacgccgtgg cggcaatagg
     2161 agagggaatc gtcggtatcg agcaggcttt cggggtcgta ttcgtcggag agcgcttcgt
     2221 gcaggacggc ttcttcatcc aggcgcgtct gcaacggcag cggcgacggc ggcacgcgcg
     2281 gcagcggcat gcgaggcggg actttcagcg gcgccacttc accgatggaa cgacggaaaa
     2341 catccgcgtc cgccacggct tcgcgctcgg cgatcacggc tgcggcgcgc tgtatcttgc
     2401 gtttggccgc agcggtctcg agggagttgc gcaatgcgcc gagccccgcg aggccatcgc
     2461 gtttcaaggc agccgacaat tcttccggcg tcggcgctgc ggccttggga ggcgcagtga
     2521 cggcgcccgg cgcgtcgtcg cgctggcgtt tcagcttggg ttcgttcgga tggggcaggt
     2581 tcttgggcat tgcacgacag aagaaaatgc tcgacggcga aactcggttc acgccgcttt
     2641 cggaaaccct ttttaacatg ggacgaggaa aaatcggcgc ggtgggcatt tttctacctg
     2701 ttttcatcca gcgtcgatcg tgctcaaaac gaaaacgccg gtcgaatcca gagggatcgc
     2761 gaccggcgtt tctttgtacc caacatacca atacgggcaa taccgaggcg tattcaggca
     2821 gcgcggaaat ccttgttact caggcgccgc ctctccagcg gcttaccgtt ccgcttcggc
     2881 gctcatcgaa tgcacggcgg gattttcgtc gatgctttca agatatcgct gggcatcgag
     2941 tgcggccata cagcccgtgc cggcgctggt gacagcctgg cgatagatgt gatcctgcac
     3001 gtcgccggcg gcgaacacgc ccggaatgct cgtgcctgtc gcgttgcctt gcaggccgcc
     3061 gtgcgtgatg atgtagccgt ttttcatctc gagctggcca acgaacaggt ccgtattcgg
     3121 cttgtggcca atcgcgacaa acacgccttg cagcggtacg tcgctggtcg tgccggtgtc
     3181 ggtgcatttg atgcgcaagc cggtcacgcc ggaagcatca cccgtgactt cgtccagcac
     3241 atggttccac ttgatctcga ctaagccttc cttttccttc gcgagcaagc ggtcgatcag
     3301 gatcggctcg gcgcggaact tgtcgcgccg atggaccacg gtcaccttct tggcgatacc
     3361 cgacaggtac agcgcctctt ccacggccgt gttgccgccg ccgatcacgg ccacttcacc
     3421 gttcttgtag aagaaaccgt cgcacgtcgc gcag
//
LOCUS       DATGBK010001826         1718 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_183668, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001826 DATGBK010000000
VERSION     DATGBK010001826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183668"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..221
                     /locus_tag="VKJ77_25725"
     CDS             <1..221
                     /locus_tag="VKJ77_25725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012428920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HMC48740.1"
                     /translation="SNRYNVLIVGFTIATALIPVMAPEVFRQMPEWTQPFLHSGVVLA
                     CLVSVALNAVLNGAHEEVVVEAHQLVRE"
     gene            294..1676
                     /locus_tag="VKJ77_25730"
     CDS             294..1676
                     /locus_tag="VKJ77_25730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006411325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC48741.1"
                     /translation="MSIRNEALLIRNPIAVMSGLRGEHARLGQVDLRIRAGRIEEIGP
                     QLVARENERVIDASSCVVYPGWVNTHHHLFQNLLKAVPAGINADLQEWLAAVPYPRLA
                     RFTPDLARIAARLGLAELLLSGVTTCADHHYLYHANGTTETGDILFEEAAAFGMRFVL
                     CRGGALQAAGDHPGFANSVLQPESLDQMLGDIERLKSRYHDARPDSMRRVVVAPTTPT
                     FSLPPALLPEIARAARGMGLRLHTHLSETRRYVDFCQEKFGMLPVEFVAEHEWLGPDV
                     WFAHLVHLEPAEIAMLAEMGSGCSHCPVSNARLGSGIAPAPQMAAAGVPMSLGVDGVA
                     SNESGSMTNEAHFAWLLHRAAQQVSATTVEETIHWGTAGGAGVLGLDAVGTLEVGKAA
                     DLVLYDVDALRFNGFHDMAIAPVAAGEPTKVRYSIANGRVVVDDGEIPGLDLDKLRRD
                     AREGVKRLLG"
BASE COUNT          314 a          520 c          561 g          323 t
ORIGIN      
        1 aaagcaatcg atacaacgtg ctgatcgtgg gcttcacgat cgcgacagcg ctgattcccg
       61 tgatggcccc cgaggtattc aggcagatgc ccgagtggac ccagccgttc ctgcacagcg
      121 gcgtcgtgct cgcctgtctc gtctccgtgg ccctcaatgc ggtgcttaac ggcgcgcacg
      181 aggaggtcgt ggtcgaggca catcaactgg tccgggaata aaccagaccg aatcgtgtgg
      241 cggccgtctc tgcgccaccg cacagcataa gcgcgttgca aggagagaca aaagtgagta
      301 tccgaaacga agccctgttg atcaggaatc ctattgccgt catgagcggc ctgcgcggcg
      361 aacacgcccg tctcggtcaa gtcgacctgc gcattcgtgc gggacgaatc gaggagatcg
      421 gtccgcaact cgtggcgaga gaaaatgaaa gagtgatcga cgccagttcc tgcgtcgtct
      481 atcccgggtg ggtcaacacg catcatcacc tgttccagaa cttgctgaag gcggtccccg
      541 ccggaataaa cgccgacctc caggaatggc ttgccgcggt gccgtaccct cgcctcgcgc
      601 gctttacgcc cgacctggct cgcatcgccg cccggctggg gctggcggaa ctgctgctct
      661 ccggtgtgac gacctgcgcc gatcaccatt atctttacca tgcaaacggc acgaccgaaa
      721 ccggcgacat cctgttcgag gaagccgctg cgttcggcat gcgcttcgtg ttgtgccgag
      781 gcggggcact tcaggctgcg ggggaccatc cggggtttgc gaacagcgtg ttacagccgg
      841 agtcacttga ccagatgctc ggcgacatcg agcgcctgaa gtcccgctat cacgatgccc
      901 gccccgactc catgcgccgg gtcgtggtcg cgcccaccac gccgaccttt tcgttgccgc
      961 ccgcgctgtt gccggaaatc gcacgcgcag cgcgcggcat gggtttgcgt ctgcatacgc
     1021 acctgtccga gacgcgtcgc tatgtcgact tctgccagga gaaattcggc atgttgcccg
     1081 tcgagtttgt cgctgagcat gaatggctcg gaccagatgt atggttcgcc catctggttc
     1141 atctggaacc cgccgagatc gcgatgctcg cggagatggg gtctggctgc tcgcattgcc
     1201 cggtcagcaa tgcgcggctt ggcagcggta ttgcgccggc gccgcagatg gcggcagcag
     1261 gcgtgcccat gtcactgggc gtggacggcg tggcctcgaa cgagtccggc agcatgacca
     1321 acgaagcgca tttcgcgtgg ttattgcacc gtgcggcgca acaggtatcc gccactaccg
     1381 tggaagaaac cattcactgg gggacggccg gcggcgcagg cgtgcttggt ctggatgcgg
     1441 tcggtacgct ggaagtgggc aaggcggcag acctggtgct ctacgacgtc gacgcgctgc
     1501 gtttcaacgg ctttcacgat atggcgatcg cgccggtggc ggccggcgag ccaacaaaag
     1561 ttcgatacag catcgcgaat ggccgagttg ttgtcgacga cggagagatc cccgggctgg
     1621 atctggataa gctccggcgg gacgccaggg agggagtaaa gcgtctgctc ggataggctg
     1681 gagcgggtat gaacggtatg tcgcgggcct cgttcact
//
LOCUS       DATGBK010001827         1568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_207298, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001827 DATGBK010000000
VERSION     DATGBK010001827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207298"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..474
                     /locus_tag="VKJ77_25735"
     CDS             <1..474
                     /locus_tag="VKJ77_25735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48742.1"
                     /translation="EPQFAIRKTCEWRPFLDEPLVVVAPAAMAGRDAHEVLRNEPFIR
                     YERSVLGGQLADRYLRDHQIHPHQRLEIDGLLAIAALVDQGIGVSLLPDWVSLWSSGM
                     ALARLALPGRAPVRRSGLIWASNGPHASLARDFFEEAQTIFGTARPVARGASRGG"
     gene            complement(576..1337)
                     /locus_tag="VKJ77_25740"
     CDS             complement(576..1337)
                     /locus_tag="VKJ77_25740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006050443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC48743.1"
                     /translation="MASATKRAQAANLINAPALALETIGRKYHSKMRMVDASSDSLSD
                     GVVVPALREAIVEGVLAPGSRLSEVQVAKQLNVSRTPMREAFAQLEREGLVTVVARVG
                     AFVRSVTLRDVAEIYTVRTALECLAVQLCAEKITTLGRAQLEDVIGEMRTNVSANDPA
                     AYVDALDRFYSIVMTLADNRTLHATHASLMGPVRRLRRIAMARGGRMRASFEQAVKIK
                     DAISSGDKRVQDLMREQLRGACEAATAVLKETEGD"
BASE COUNT          269 a          505 c          475 g          319 t
ORIGIN      
        1 gagccgcagt tcgccattcg caagacctgc gaatggcggc ccttcctgga tgaaccgctg
       61 gtggtcgtgg ccccagccgc gatggccggc cgcgacgcgc acgaggtgct gcgcaacgag
      121 cctttcattc gatacgagcg ttctgtgctt ggcggtcagc tcgcggatcg ttatctgcgc
      181 gatcatcaga ttcatcccca tcagcggctc gagattgacg gcctgctggc gatcgccgcg
      241 ctggtcgatc aaggcatcgg cgtatcgctg ctgccggact gggtgtcgct ctggtcgagt
      301 ggcatggcgc tggcgcggct ggcgttgccg ggccgcgcgc cagtgcggcg cagcggcttg
      361 atctgggcca gcaacgggcc gcacgcgtcc ctggctcggg attttttcga ggaggcgcag
      421 acgattttcg gaaccgcccg gccggtggcc cgcggtgcgt cacggggtgg ctagcctctc
      481 ggcgtcgtgt cgaggaacgg tttccgatca aaacggaagg agcgctctcg cttcttccgt
      541 tttcatttgg cgtgagtcca tgtcatatgc aaccctcaat caccctcagt ttccttaagc
      601 acggccgtcg ccgcttcgca agcgccgcgc aattgctcgc gcatcaggtc ttgaacgcgt
      661 ttatcgccac tggagattgc gtccttgatc ttcacggcct gttcaaacga tgcacgcatg
      721 cgcccgccgc gcgccatcgc aatgcgccgc aatcgacgca ctggacccat caggctcgcg
      781 tgcgttgcgt gaagcgtgcg gttgtcggcc agggtcatca caatcgaata gaaacggtcg
      841 agcgcatcga cataagccgc agggtcattg gcgcttacgt tagtgcgcat ctcacctatt
      901 acgtcttcta actgtgcccg gccgagcgtc gtgatcttct ctgcgcaaag ctggacggcg
      961 aggcactcga gcgcggttcg caccgtgtag atctcagcca catcacgcag cgtcaccgac
     1021 cggacgaacg cgccaacacg cgccacaacc gtcaccagcc cctcgcgttc aagctgcgcg
     1081 aacgcctcac gcatgggcgt gcggctgacg ttcagctgct tcgcgacctg cacctccgac
     1141 aaccggcttc ccggcgccag cacgccttcc acaatcgctt cccgcaacgc cgggaccacc
     1201 acgccgtcgc tgagcgagtc gctggatgcg tcgaccatgc gcatcttcga gtgatatttg
     1261 cggccgatcg tttcgagcgc cagcgctggc gcattgatga gatttgccgc ttgagcgcgt
     1321 ttcgttgcag aggccattga ctttccgttg atcagtgaat acgctgtata caggttatac
     1381 aggcaattat acaacaggag gctgcttgga tcacgcgcgc ttgccgaacc cggtcgtgat
     1441 cgatcgatcg ggcgaaattc tgacctttac cctgaacaat gccgacgccg gcaatgaagt
     1501 caccgggccc atgttcgacg ccatgatcgc tgcgttgtgc agcgaagcga ctgtgcccgc
     1561 ggcgcgcg
//
LOCUS       DATGBK010001828         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_45521, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001828 DATGBK010000000
VERSION     DATGBK010001828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45521"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(277..843)
                     /locus_tag="VKJ77_25745"
     CDS             complement(277..843)
                     /locus_tag="VKJ77_25745"
                     /inference="COORDINATES: protein motif:HMM:NF024978.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HMC48744.1"
                     /translation="MASAIFLLALLGGCASEPPVRISAYSASGGDFATKGVKTYALQS
                     SSVEPQGSAAPDAATDAAPARWLDETLAAKGLRQAPPNSADYLVKLGYATRPQAVSVH
                     AECTGTPESACDDVAPQKEWFGRKHYVHALTIQFVERTSGAVSYQVNVTHADRDPAGG
                     AALHSLMSCAFADFPMHNAERREVAHCD"
     gene            complement(878..>1520)
                     /locus_tag="VKJ77_25750"
     CDS             complement(878..>1520)
                     /locus_tag="VKJ77_25750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HMC48745.1"
                     /translation="TERPHIDSKPAMDLMERVERYARRTLALADDFVQLARAESQHYS
                     LELLNLHELAIDASDEIWPLANEKDIEVRCESEGQVFWVLADRSLMTRALINLLSNAV
                     KYSPSGTRVDCIVTEMPGAVVCMVRDAGYGIALEQQAHLFERFRRFHLDGQPPSDGTG
                     LGMAFVKTVISRHAGEIAIQSAPDQGTTVTITLRSQTIEPRDANGEQPDAQKQ"
BASE COUNT          266 a          500 c          454 g          300 t
ORIGIN      
        1 tcgcatcggg ggaagcgctg gcatcaggcg cagtacttga ctcgtccgca acggcgttcg
       61 tcagccaaac gcaagtgaac gagactacgg tgcaacggcg aaaatcggca aacttcactg
      121 cgggttccct ggcatgtcga gtccttcggg ctcgtgtgga ttgaacgtcc tcagcggctc
      181 ggcctggtcg cctgcaatcc tcgccgcttc gttcaggcgc aagaatacgc cattatccct
      241 gcgtcaatct cccgcacgcc gatcttccgc tagccactaa tcacaatgcg cgacctcgcg
      301 ccgctcggca ttgtgcatgg gaaagtcggc gaacgcacaa ctcatgaggc tgtgcagcgc
      361 cgcgccgccg gccgggtcgc gatccgcatg ggtgacgttt acctggtaac tcaccgcccc
      421 gctcgtccgc tcgacgaact ggattgttag cgcatgaacg tagtgcttgc gcccgaacca
      481 ttccttctgc ggcgcgacat cgtcgcatgc gctttcgggt gtgccggtgc actcggcgtg
      541 cacactcaca gcttgcggac gcgttgcgta gcccagcttg acgagatagt ccgcgctgtt
      601 cggaggcgcc tgccgcaagc ctttcgcggc cagtgtttca tcaagccagc gagcgggcgc
      661 ggcatcggtc gccgcatcgg gcgcggcgct gccctgaggc tcgacgcttg acgattgcaa
      721 cgcataggtc ttgacgccct tcgtcgcgaa atctccgcca gacgcgctgt aggcgctaat
      781 cctcaccggc ggctcgctgg cgcaaccgcc caggagcgcg agaaggaaaa tggcgctagc
      841 catcgatcgt atgttcactt cgttccccaa aaaacgttta ttgcttctgc gcatcgggtt
      901 gttcgccgtt cgcgtcgcgc ggttcgatag tctgtgagcg caaggtgatc gtcacggtcg
      961 tcccctggtc cggcgcgctt tgaatcgcga tctccccggc gtggcggctg atcaccgtct
     1021 tcacgaacgc catccccagc ccggttccgt cgctcggcgg ctggccatcg agatgaaagc
     1081 gccggaagcg ttcgaacaaa tgcgcctgct gctcaagcgc aatgccgtaa cccgcgtccc
     1141 gcaccataca cacgaccgcg cccggcatct ccgtgacgat acagtcgacg cgcgtgccgg
     1201 acgggctgta tttcaccgcg ttgctgagca ggttgatgag cgcgcgcgtc atcagcgacc
     1261 ggtccgccaa aacccagaag acctggcctt cgctctcgca acgcacctcg atgtccttct
     1321 cgttcgcaag cggccagatt tcatcgctcg cgtcgatcgc gagttcatgc aagttaagca
     1381 gctcgaggct gtagtgctgc gattcggcac gggcgagctg aacaaaatca tcggcgagag
     1441 cgagcgtgcg tcgcgcgtaa cgttcgacac gttccatcag gtccatcgcc ggcttcgagt
     1501 cgatgtgcgg ccgctcggtg
//
LOCUS       DATGBK010001829         3399 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_160602, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001829 DATGBK010000000
VERSION     DATGBK010001829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3399
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160602"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..560
                     /locus_tag="VKJ77_25755"
     CDS             <1..560
                     /locus_tag="VKJ77_25755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019921402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="endopolygalacturonase"
                     /protein_id="HMC48746.1"
                     /translation="LIFQNINWATNPLNTAIRLKTNLNRGGYLRNFHVRNISIPNGVQ
                     TSPSFYASLPGSPIQSRTVATAAGAVVTFDCDYAPLADNVRTRPPMVSNVHISNVTVG
                     NVNKGGKQLSCYQAIVILGPVASDYNGPQPAPVVPPVMDVSISDCDFGTPANAEQPWF
                     LYNVKGLRLKNVTIAGKVHDTTLSA"
     gene            568..2337
                     /locus_tag="VKJ77_25760"
     CDS             568..2337
                     /locus_tag="VKJ77_25760"
                     /inference="COORDINATES: protein motif:HMM:NF013276.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030599 - pectinesterase activity
                     [Evidence IEA];
                     GO_process: GO:0042545 - cell wall modification [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pectinesterase family protein"
                     /protein_id="HMC48747.1"
                     /translation="MMIVARYRYTLFIMLACAAQASAQQALPANGASGVNPDTHLVLT
                     FAQAPQLGRSGQIRIYDAADKRLVDTLDLGIPDGPTERTTAPAPPYLAIPYPYGEGPR
                     RSNADTKPGTPSAGAEPVPGHYQLTIIGGFTDGFHFHPVIVHDKSATIYPHNNLLEYG
                     KTYYVQIDPNVLTLPDHSFHGIAGDGGWRFSTKSQRPSTDKDRLVVSADGSGDFNTVQ
                     GAVDFAPDHPANRLTIFIRNGDYEEIVYFRNKHDLTFLGEDRDKVRIHYANNETFNPH
                     PANIGTNELPGTFPSRRAAFAVDHSSGIALVNLTLQTTLAGQAEGLLMNGGRNIASHV
                     TVIGSGDALQVNDSVYFSDVKIVGRGDTILGRGPAYFRRCEIESEHAYMWIRNPSTNH
                     GNVFVGCRFDTSGGATTEFAREPANKGMTYPHAEAVLIDATLSGISPAGWGEVSGDAS
                     QVHFWEYNSRNADGTPLDARGRNPISRQLDPQRDAATIASYRDPAFVLDGWQPSMAPL
                     ILKQPTAATVSAGTAATLQVSAAAVPDASYQWFKNGKPIADARTASLSIQSVAPSDAG
                     AYSVRVDNASGGATSTAAQLVVH"
     gene            complement(2371..2781)
                     /locus_tag="VKJ77_25765"
                     /pseudo
     CDS             complement(2371..2781)
                     /locus_tag="VKJ77_25765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003150546.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
     gene            complement(2781..3020)
                     /locus_tag="VKJ77_25770"
     CDS             complement(2781..3020)
                     /locus_tag="VKJ77_25770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017335987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HMC48748.1"
                     /translation="MGQIRWNIAVSADTDQSLRIFLASQGGNRKGDLSRFIEEAVRAR
                     ILELTAEQAKAANADLNEVDLSAIVDEAVQWANSR"
     gene            complement(3166..>3399)
                     /locus_tag="VKJ77_25775"
     CDS             complement(3166..>3399)
                     /locus_tag="VKJ77_25775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019921401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HMC48749.1"
                     /translation="CGNDAGCVLRFTPEGKLDRRIDVPMLKPAMCSFGGADLDTLIVT
                     SIVSGKPEDSAWGGAVVMLWPGVKGMAEARFKA"
BASE COUNT          686 a         1096 c         1010 g          607 t
ORIGIN      
        1 atctgatttt ccagaacatc aactgggcca ccaatccgct caacacggcg atacgtttga
       61 agacgaattt gaatcgcggc ggctatctgc gcaatttcca cgtgcggaat atctcgatac
      121 cgaacggcgt gcaaaccagt ccatcgttct atgcgtcgct gccaggttcg ccgatccagt
      181 cgcgcaccgt ggcgacggcg gccggcgcgg tcgtcacctt cgattgcgac tacgcgccgc
      241 tcgccgacaa cgtgcgcacg cggccgccga tggtcagcaa cgtgcatatc tcgaacgtca
      301 cggtggggaa tgtgaacaag ggcggcaagc agctgtcgtg ctaccaggcc atcgtgatac
      361 tcggcccggt cgcctcggac tacaacggcc cgcagcctgc tcccgtcgtg ccgccggtga
      421 tggacgtgag tatcagcgac tgcgatttcg gcacgccggc caatgcggag cagccgtggt
      481 tcctctataa cgtcaaggga ctgcggctga aaaacgtcac catagccggc aaggtgcacg
      541 acaccacgct gtcggcatga ggagcgcatg atgatcgtcg cgcggtatcg ctacacatta
      601 ttcatcatgc tggcctgtgc cgcgcaggcc agcgcgcagc aggccttgcc ggccaacggc
      661 gccagcggcg tcaacccgga tacgcatctg gtgctgacat tcgcgcaggc gccgcaactg
      721 gggcgctcgg gccagatccg catctacgac gcggccgaca agcggctggt cgacacgctg
      781 gacctgggca ttcccgatgg cccgaccgaa cgcaccacgg cgcccgcgcc gccctatctg
      841 gcgatacctt atccgtatgg cgaaggtccg cgacgcagca acgccgatac caaaccgggc
      901 acgccgtcgg ccggcgcgga gccggtgccg ggccactatc agctgacgat tatcggcggc
      961 ttcaccgacg gcttccattt ccatccggtg atcgtgcacg acaagagcgc caccatctac
     1021 ccgcataaca atctgctcga atacggcaag acctattacg tgcagatcga tccgaacgtg
     1081 ttgacgctgc cagatcacag tttccacggc atcgccggag acggcggctg gcgtttcagc
     1141 acgaaatcgc agaggcccag cacggataag gatcgcttgg tcgtcagcgc ggacggcagc
     1201 ggcgacttca acacggtgca gggcgccgtg gatttcgcgc ccgaccatcc ggccaatcgc
     1261 ctgaccattt tcattcgcaa cggcgactac gaggaaatcg tctacttccg taacaagcat
     1321 gacctgacct tcctcggcga agatcgcgac aaggtgcgga tacattacgc gaacaacgaa
     1381 accttcaatc cgcatccggc caacatcggc accaatgaat tgccgggcac tttcccatcg
     1441 cgccgcgctg cgtttgcggt cgaccattcg agcggcatcg cgctggtcaa cctgacgctg
     1501 caaaccaccc tggccggcca ggcggaggga ctgttgatga acggcggccg caatatcgcc
     1561 agccacgtca cggtgatcgg ttcgggcgac gccttgcagg tcaacgacag cgtctatttc
     1621 agcgacgtga aaatcgtcgg gcgcggcgac accatcctcg gacgcggccc ggcgtatttc
     1681 cgccgctgcg aaatcgaatc cgaacacgcc tatatgtgga tacgcaatcc gtccaccaac
     1741 cacggcaacg tgttcgtcgg ctgccgcttc gacaccagcg gcggcgccac gacggaattc
     1801 gcgcgcgagc cggccaacaa gggcatgacc tatccgcatg ccgaggcggt gctgatcgac
     1861 gcgacgctga gcggcatcag tcccgccggc tggggcgagg tgtccggcga cgccagtcaa
     1921 gtccacttct gggaatacaa cagccgcaac gccgacggca cgccgctcga cgcacgcggg
     1981 cgcaatccga tttcgcgcca gctcgacccg cagcgcgacg ccgcgaccat cgccagctat
     2041 cgcgatccgg ctttcgtgct cgatgggtgg cagccgtcca tggcgccgct gatactgaag
     2101 cagccgacgg cggccacggt atccgccggc actgctgcca cgctgcaggt cagcgcggcg
     2161 gccgtgcccg acgccagcta tcaatggttc aagaacggca agccgatagc cgatgcgcgc
     2221 acggccagcc tgtccatcca gtccgtagcg ccatccgatg cgggagcgta tagcgtccga
     2281 gtcgacaacg catctggcgg cgcgaccagc accgctgcgc agctggtcgt gcattgattc
     2341 gataggtgtg actaagccga ttaactacgg tcagaggaat tcagtgcaaa acgcagtggg
     2401 tgtgacaatg cgagtcgggc cgaagtgccc gcgctgtaac aggcctgcgc gccggtcgcc
     2461 agtaatcaaa tagttcgcat cacccgcgac cgccatcgcg agcagaaacg catcgttcgg
     2521 atcgtcggtc tcaatgtccg acgtaagccg ttccagcacg attgcccgtt gaagattatt
     2581 gaccatggcg ccgactcggt gaggttgaag tagggcctgg aatttggggt agtggctggc
     2641 gcgacgtatc tcgtccagct agaccagcga cgtgaccacc tcgaatctgg cggcacgcca
     2701 cgcccggtag gtggcgtctg gcgctccgtg tggtgagatt aacgcagaga gcaggacatt
     2761 cgtgtcgagc acgactcgca tcagcggcta ttcgcccact gcaccgcctc gtcaacaatc
     2821 gcgctcagat ccacctcatt gaggtctgca ttcgcggcct tggcctgctc ggctgtgagc
     2881 tcaagtatgc gagcgcgtac cgcttcctcg atgaagcggg atagatcgcc ttttcgattg
     2941 ccgccctggc ttgcgaggaa tatgcgcagc gattgatcgg tgtccgctga taccgcaata
     3001 ttccaacgaa tttggcccat gattttcctc ttcaaatgct gatcgcaatg agcatttaac
     3061 tttggcacgc ataagtacta gagtgtttat acgtcaaaat aagagtgaac tcaagacggt
     3121 ccaacaaacg aatgacggtg gcgcggcttt cgtgttcaag ctcgctcatg ctttgaagcg
     3181 cgcttccgcc atgcctttga cgccgggcca cagcatcacc acggcgccgc cccaggcgct
     3241 gtcctccggt ttgccggaga cgatggaggt gacgatcagc gtatccagat cggcgccgcc
     3301 gaatgaacac atggccggtt tcagcatcgg cacgtcgatg cgcctatcga gcttgccctc
     3361 gggcgtgaag cgcagcacgc agccggcgtc gttcccgca
//
LOCUS       DATGBK010001830         1657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_230641, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001830 DATGBK010000000
VERSION     DATGBK010001830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230641"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..>1657
                     /locus_tag="VKJ77_25780"
     CDS             161..>1657
                     /locus_tag="VKJ77_25780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48750.1"
                     /translation="MLLCILLTPCAALPQASARLPSDAELERSAALIGNITINNLNIF
                     DLNDPRDDTRLFRLADRLHARTRQQIVRRELLFVSGDKYSRRVLEESERLLRKASYFY
                     DASIRPIAYHDGRVDVLVTTRDVWTLNPGFSYGRSGGTSSIGFQLQELNAFGYGTAVT
                     LGRKSSVDRTETQFGVQDKNVHGSRVGVQALYSQNSDGYQHDLFVNRLFYALDSRWTG
                     GAGGADDLRVDSLYDRGNIIDQFQEHDRLARAYGGWSRGLQNGWVARWTLGATFDDRQ
                     FAVAPGSTGVNLVPGERKLVYPWVRYELIEDDYLKYHNYNEIERTEDFYLGSHVSAQI
                     GWSDPAFGANLAGLVFSAAAGYGIASSHRETLLFTTTLDGRLENGTPQNTVAAAGLHY
                     YFRQSEQLLFYAGLDAAAGRNLDLDNQILLGGDNGLRGYPLRYQDGTSRALVTIEERY
                     YTNWYPFRLFRVGAAAFMDVGRTWGNAPLAVPGLGILRDLGFGLRLGNS"
BASE COUNT          307 a          543 c          487 g          320 t
ORIGIN      
        1 gcaggacggc gacgtcgcac gcgtcatcgc tgccgtacag cgcattttgc gtgcgcatgc
       61 gcgccgttaa acgcgctcaa aacacccaag aatgcgactg atgcacagaa gcggcgcgcg
      121 ctcgtgccgt acgatccttg ccgtgtcatc gcaccgtgca atgctcctgt gcattcttct
      181 gaccccgtgc gcggcgttac cgcaagcgag cgctcggctg ccaagcgacg ccgagctcga
      241 acgctccgca gcgctcattg gaaacatcac gatcaacaac ctgaacatct tcgatcttaa
      301 tgatccgcga gatgacacga ggctcttccg gctcgctgac cggctgcacg cccgcacccg
      361 gcagcagatc gtccgccggg aactgttgtt tgtcagcggc gataagtact ctcgccgcgt
      421 gctggaagag tccgagcgtc tgttgcggaa ggcgtcgtac ttctatgatg catcgatccg
      481 gcccatcgcc taccacgacg gacgcgtgga tgttctcgtt acgactcgcg atgtgtggac
      541 cttaaatcct gggttctctt atggccgcag cggcggcacc agcagcatcg gcttccaatt
      601 gcaggagctg aacgcattcg gttacggcac cgccgtcacg ctcggccgca aatccagcgt
      661 cgaccgcacc gagacacagt tcggtgtgca ggacaaaaat gtccacggca gtcgcgtcgg
      721 agtgcaggcg ctgtattcgc agaacagcga cggctatcag cacgacctat tcgtcaatcg
      781 actcttctac gcgcttgact cccgctggac aggcggtgca ggcggcgccg atgacctgcg
      841 cgtcgactcg ctgtacgacc gcggcaatat catcgatcag ttccaggaac acgatcgctt
      901 ggcccgagcc tatggcggct ggtcgcgagg acttcaaaac ggttgggtcg cgcgctggac
      961 actcggcgct acctttgacg atcggcagtt cgcggtcgcg cccggctcga ccggcgtcaa
     1021 cctcgtgccg ggcgagcgca aattggtcta cccgtgggtg cgctatgagc tcatcgagga
     1081 tgattatctc aagtaccaca actacaacga gatcgagcgc accgaggatt tttacctggg
     1141 gagccatgtc agcgcccaga tcggctggtc cgatccggcc tttggagcaa accttgccgg
     1201 actcgtgttc tccgccgccg cgggctacgg gattgcctcc tcgcatcgcg aaacgctgct
     1261 cttcacgacg acgctcgatg ggcgcctcga aaacggcaca ccgcaaaaca ccgtcgccgc
     1321 cgccggcttg cattactact tcagacagtc ggagcaattg ctcttctacg ccgggcttga
     1381 cgcggccgcg ggtcgcaatc ttgacctcga caaccagatt ctcctgggcg gcgacaatgg
     1441 cctgcgcggc tatccgctgc gctaccagga cggcacctcg cgcgcgctcg tgacgattga
     1501 ggagcgctac tacaccaatt ggtacccgtt tcgcctgttc cgcgtggggg ccgccgcatt
     1561 catggacgtc ggccgcacct ggggcaacgc gcctctcgcc gtcccgggtc ttgggattct
     1621 aagagatcta ggctttggcc tgcgcctcgg caacagc
//
LOCUS       DATGBK010001831         2379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_230663, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001831 DATGBK010000000
VERSION     DATGBK010001831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230663"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..513)
                     /locus_tag="VKJ77_25785"
     CDS             complement(<1..513)
                     /locus_tag="VKJ77_25785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011516385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HMC48751.1"
                     /translation="MGMLVKGLWQDIAYETKSGEFVRNDSVFRDWVTADGSSGFRAEA
                     ERYHLYVSLACPWAHRTLILRTLKGLEDAITVSIVDPYMGPGGWSFTEHRGCTSDSVN
                     GATFLREIYLKANFDYMGRVTVPVLWDRKTGTIINNESSEIIRMLNSEFDAFALRELP
                     DLYPQALRPQI"
     gene            complement(574..1272)
                     /locus_tag="VKJ77_25790"
     CDS             complement(574..1272)
                     /locus_tag="VKJ77_25790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011615792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HMC48752.1"
                     /translation="MLQVRKGNERGYADHGWLKSFHTFSFADYQDPEHMGFGSLRVIN
                     EDRILPGSGFGTHGHRDMEIISYVLEGALAHEDNMGNGSTMVPGDVQRMSAGNGVLHS
                     EYNHSKDNVTHFLQIWIEPNVTGIRPSYEQKLFDAASKRGRLRLIASSDAREGSVLIH
                     QDASVYAALLDGAERIEHKLDPARRAYVHVARGKLKINGQPLEAGDALKASGVAGMVF
                     ESGEQAEIILFDLA"
     gene            complement(1316..1729)
                     /locus_tag="VKJ77_25795"
     CDS             complement(1316..1729)
                     /locus_tag="VKJ77_25795"
                     /inference="COORDINATES: protein motif:HMM:NF019032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1499 domain-containing protein"
                     /protein_id="HMC48753.1"
                     /translation="MGLFSGTRPDNLGVRDGRLAPPKPTPNNVNSQVDRNADSGHYIE
                     PLRYAGDARQAWAALRQVIDGMQRVKVVKSEPNYIYAEFSTKLMGYVDDTEFYLDENA
                     GVIHVRSASRLGIGDFGVNRERIESIRAKLAQAKT"
     gene            complement(1819..>2379)
                     /locus_tag="VKJ77_25800"
     CDS             complement(1819..>2379)
                     /locus_tag="VKJ77_25800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015015555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HMC48754.1"
                     /translation="VMAASKGNGALLKYLAGRYGLFGALKLMVKFVAAMGKKFTGFAT
                     ERMYSAAPIGCGPYAVRVRLLPARGKPLADASNDWAADIGRQLAAGPLVHELQLQFFV
                     DEQRTPIEDASVNWTEDVAPYLTVAHLTIPQQSLDDAAAAAFAKEVEQAVFDPWDALA
                     EHRPLGDVMRARKVAYFASEKTRGAL"
BASE COUNT          433 a          766 c          688 g          492 t
ORIGIN      
        1 gatctgcggt cgcagcgcct gcggatacag atcgggcagt tcgcgcaatg cgaacgcgtc
       61 gaactcggaa ttcagcatgc gaatgatctc cgaggactcg ttgttgatga tcgttcccgt
      121 cttcctgtcc cagagcacgg gcacagtcac gcgccccatg tagtcgaaat tcgctttcag
      181 atagatttcg cgcaggaaag tggccccgtt tacgctatcg cttgtgcaac cgcggtgctc
      241 ggtaaagctc catcctcccg gacccatata gggatcgacg atggacaccg tgattgcgtc
      301 ctccagcccc ttgagggtgc gcaggatcag cgtgcggtgc gcccatgggc aggcgagcga
      361 aacgtacagg tggtagcgtt ccgcctcggc gcgaaatccc gaagagccgt cggccgttac
      421 ccaatcgcga aacaccgagt cgttgcggac gaattcgccg ctctttgtct cataggcgat
      481 gtcctgccac aggcctttca ccagcattcc catcgtctgt ttgcccctta cattgcgagt
      541 gttctacgtg ttccgtcaat tccgtgtcgt tgctcacgcc aaatcgaaca ggattatttc
      601 agcctgctca ccgctctcaa acaccatccc ggccacgccg ctcgccttga gcgcatcgcc
      661 tgcttccagc ggctggccat tgattttcag tttgccgcga gccacatgca catacgctct
      721 gcgcgcggga tcgagtttgt gctcgatgcg ctcggcgccg tcgagcagtg ctgcatagac
      781 cgaagcatcc tgatggatca gcaccgaacc ttcgcgcgcg tcgctggagg cgatcagccg
      841 caagcggccg cgcttggatg ctgcatcgaa aagcttctgc tcgtaactcg gccggatgcc
      901 agtgacattg ggttcgatcc agatctgcag gaagtgcgtg acgttgtcct tggaatggtt
      961 gtactctgaa tgcagcaccc cgttgcccgc gctcatgcgc tggacgtccc cgggaaccat
     1021 ggtagacccg ttgcccatgt tgtcttcgtg cgccagcgcg ccttcgagca cgtaactgat
     1081 gatttccata tcgcggtgac cgtgggtgcc gaagccgctg ccggggagga tgcggtcctc
     1141 gttgatcacc cgcaggctgc cgaaacccat gtgctcggga tcctgataat cggcaaatga
     1201 aaaagtgtgg aaagacttga gccaaccgtg gtcggcgtaa ccgcgctcat tgcccttgcg
     1261 aacctgcaac atgccagtct cctgtctgat agttctgatg tattgaccca gtggtctagg
     1321 tttttgcttg cgccagcttc gcgcggatgg attcgatgcg ctcgcggttg acgccgaaat
     1381 cgccgatccc caggcgcgaa gccgaacgca catggatcac cccggcattc tcgtccaggt
     1441 agaactcggt atcgtcgacg taacccatga gcttggtgct gaattcggca taaatatagt
     1501 tcggctccga tttcaccacc ttgacgcgct gcatgccatc gatgacctgc ctcagggccg
     1561 cccaagcctg cctggcatcg cccgcgtagc gcaatggctc gatgtaatgc cctgaatcgg
     1621 cgttcctgtc gacctggctg ttgacgttat tgggcgtagg cttgggcggc gccaggcggc
     1681 cgtcgcgcac gcctagattg tccggcctcg tgccgctgaa taatcccatg ggtcctccga
     1741 tagcggtgat tggcgcaatg agcgcgacaa gtacggctgc aacgcgcagc tgtttccaca
     1801 aagtgccgag cgcacggctc aaagcgcccc gcgcgtcttc tcgctggcga aatatgcgac
     1861 cttgcgcgcc cgcatcacgt cgcccagcgg ccggtgctcg gccagcgcat cccagggatc
     1921 gaacacagcc tgctcgactt ccttcgcgaa ggcggccgct gccgcgtcgt ccaaggactg
     1981 ttgcgggatg gtgagatgcg cgaccgtcag atatggcgcc acgtcctcgg tccaattgac
     2041 cgaggcgtcc tcgatgggcg tgcgctgttc gtcgacgaag aactgcagtt gcagctcgtg
     2101 caccagcggc ccggcagcca gttgcctgcc gatgtcggcc gcccagtcgt tcgacgcgtc
     2161 cgccaggggc ttgcccctgg caggcagcag ccgcacccgc acagcgtagg gcccgcaccc
     2221 aatcggcgcc gcggagtaca tccgctccgt cgcaaagccg gtgaatttct ttcccatggc
     2281 cgcgacgaac ttcaccatca gcttcaacgc gccgaacaat ccgtaacgac cagccaggta
     2341 cttaagcagc gccccgttgc ccttcgacgc cgccatcac
//
LOCUS       DATGBK010001832         2834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_183751, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001832 DATGBK010000000
VERSION     DATGBK010001832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183751"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..293
                     /locus_tag="VKJ77_25805"
     CDS             <1..293
                     /locus_tag="VKJ77_25805"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0106130 - purine phosphoribosyltransferase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="purine phosphoribosyltransferase family protein"
                     /protein_id="HMC48755.1"
                     /translation="KGKLPFRTLSQSYELEYGSATVEIHEDACKPGERVVLVDDLIAT
                     GGTMMAGKMLLERLGAVVVEGAAIIDLPELGGSKLLREAGLPLYTVCEFSGH"
     gene            305..919
                     /locus_tag="VKJ77_25810"
     CDS             305..919
                     /locus_tag="VKJ77_25810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004530934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HMC48756.1"
                     /translation="MPNFLLFLAASVAITMAPGPDNLQVLARGISQGRAAGLVAALGF
                     AAGISFHTTLAALGVAALLKSSPVAFEAVKLAGAAYLVWIGIKAIRSKGLSSAHERPS
                     QPLAVVFRQSVIGNLLNPKVTLFFIVFLPQFVNPHGAQSVMLQMFELGGVFMLQTVAV
                     FSVFGVAAGMIGAYLKRRPRVGVWLDRLAGATFIGLGIRVALKN"
     gene            1052..1897
                     /locus_tag="VKJ77_25815"
     CDS             1052..1897
                     /locus_tag="VKJ77_25815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4743 domain-containing protein"
                     /protein_id="HMC48757.1"
                     /translation="MSLPAIVAARRFDASAHLPFYIDRERVGWIRRSDAPALYAWPDV
                     FHIDQTSIRLAEPFSDLNSRSAALGAVIGMLAADGRIPGWRNETYAIRNAFDAEPLAF
                     IERAASRFFGTMTYAVHLNGIVEEPGRAPELWIARRSETKATDPGMLDNVVAGGIGWG
                     MGIKETLVKECWEEAGMQPQLAAKAIRGREFYVLQSLPEGTQAELIYVFDLTLPADFA
                     PRNQDGEVGEHRLARIDEVARWIEEGAMTVDASLATLDCLLRRNWIDEEACEGMPAIY
                     LPPAV"
     gene            1955..2824
                     /gene="purU"
                     /locus_tag="VKJ77_25820"
     CDS             1955..2824
                     /gene="purU"
                     /locus_tag="VKJ77_25820"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013587058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HMC48758.1"
                     /translation="MSTEHSFILKLSCPDRPGIVHAVSGFLFDLGSNILDSAQFGDSH
                     TGEFFMRVHFQQVGGDPGLVALRTSFSTLADGFGMHWELHDASVKPRVMIMVSKIGHC
                     LNDLLFRYRTGQLGIEIPAIVSNHRDFYQLAASYDVPFHHLPLIASTPEGKAAQEARV
                     LEIVDQHKIDLVVLARYMQILSPGMCGALNGRAINIHHSFLPSFKGAKPYYQAFDRGV
                     KLIGATAHYVTTDLDEGPIIEQGVERVDHSMTPDQLTAIGRDVECVTLARAVRWHVEH
                     RILLNGSKTVVFR"
BASE COUNT          513 a          773 c          911 g          637 t
ORIGIN      
        1 agaagggcaa gttgccgttc aggacgctgt cgcagtcgta tgaacttgaa tatggcagcg
       61 cgaccgtcga aattcacgaa gatgcgtgca agccgggcga gcgggtggtg ctggtcgacg
      121 acctgatcgc aaccggcggc acgatgatgg ccggcaagat gctgctcgaa cggcttggcg
      181 cggtggtggt cgagggggcc gcgattatcg atttgcctga gcttggcggg tcgaaactct
      241 tgcgtgaggc aggtttgcct ctatatacgg tctgcgaatt cagcggccac taattttctg
      301 aaccatgcct aatttccttc tctttctcgc ggcttccgtt gctattacca tggcgccggg
      361 tcctgacaac ctccaggttc tcgcgcgcgg catttcgcag gggcgcgcgg ccgggctggt
      421 tgccgcgctt ggatttgcag ctggtatctc attccacacg acgcttgccg cgcttggggt
      481 ggcagcgttg ctcaagtctt ctccagtggc cttcgaagcg gtcaagctgg ctggcgcggc
      541 gtatttggtc tggatcggga tcaaggcgat tcgcagcaag gggttgtcga gcgcgcacga
      601 gcggcctagc cagccgttgg ccgtggtgtt tcggcaaagc gtgatcggca atttgctgaa
      661 tccgaaagtg acgctgtttt ttatcgtatt cctgccgcag ttcgtgaatc cgcatggcgc
      721 gcaaagcgtc atgttgcaga tgttcgagct tggcggcgtg ttcatgttgc aaacggtagc
      781 ggtattttcc gttttcggcg tcgccgccgg gatgatcggg gcctatttga agcggcgtcc
      841 gagagtaggc gtgtggctcg accggctggc cggggcgacg tttatcgggc tgggaattcg
      901 cgtggcgttg aagaattgag agaggcttca ttctcgcttg ggcaagggat tgccttggcg
      961 ggtttggggc attgagcgcc ttccccaagc ccagcctgcg gcgaacgaaa ccccctgtac
     1021 aatttccggc tttgcgtcgc cggagcccat catgagcttg cctgccattg tcgccgcgcg
     1081 tcgtttcgat gcttcggcgc acctgccgtt ttacatcgac cgtgaacggg tcggctggat
     1141 tcgtcgcagc gacgcccccg cgctgtacgc atggccggac gtgtttcata tcgatcaaac
     1201 gtcaatccgt ctcgccgaac ccttctccga tctcaactcg cgcagcgccg cgctaggcgc
     1261 agtcatcggc atgctggccg cggacggtcg tattcccggc tggcgcaacg aaacctacgc
     1321 catccgcaat gccttcgacg ccgaaccgct tgcgttcatc gaacgggctg cgtcgcggtt
     1381 cttcggcaca atgacgtacg ctgtccatct gaacggcatt gtcgaagagc caggtcgcgc
     1441 gccagagctc tggatcgccc ggcgcagcga aacaaaagcg accgatccag gcatgctcga
     1501 taacgtggtg gcaggcggta tcggctgggg gatggggatc aaggaaacgc ttgtgaagga
     1561 gtgctgggaa gaagcgggca tgcagccgca gcttgctgcc aaggccattc gtgggcgtga
     1621 attctatgtg ctgcaatcgc tgcccgaagg cactcaggca gagttgattt acgttttcga
     1681 cctgaccttg cccgccgact tcgcaccgcg caatcaggat ggcgaagtgg gcgaacaccg
     1741 gctcgctcgt atcgatgaag tcgcgcgatg gatcgaggaa ggcgcaatga cggtcgatgc
     1801 cagtctggcc accctggatt gcctgctgcg ccgcaactgg atagacgaag aagcgtgcga
     1861 aggtatgccg gcgatttatc taccgccggc ggtttgaaca cccggtgaac acgcgttgaa
     1921 cgtgctttga aacatctcaa aggagtatcg gttcatgtcg accgaacata gttttatctt
     1981 gaagttgtcg tgtccggatc gtcccggcat cgtgcatgcc gtgtccgggt tcctgttcga
     2041 tctcggcagc aatattctcg attccgcgca attcggcgac agtcacaccg gcgaattttt
     2101 catgcgcgtg catttccagc aggtcggcgg cgaccccggt ctcgttgcgt tgcgcacatc
     2161 gttcagcacg ctcgccgacg gcttcggcat gcactgggaa ctgcacgatg catcggtgaa
     2221 accgcgcgtg atgatcatgg tgtcgaagat cggacattgc ctgaacgact tgctgtttcg
     2281 atatcgcacc ggccaacttg ggatcgagat tccggcgatc gtttcgaatc atcgggattt
     2341 ctatcagctt gccgccagtt atgacgtgcc gtttcatcat ctgccgttga ttgcgtccac
     2401 gcccgaaggg aaggctgcgc aggaagcgcg ggtgctggag atcgtcgatc agcacaagat
     2461 cgatctcgtc gtgctcgcgc gttatatgca gatcttgtcg ccgggtatgt gcggggcgct
     2521 caatggccgg gcgatcaata ttcaccactc gttcttgccg agcttcaagg gcgccaagcc
     2581 ttattaccag gcgttcgatc gcggcgttaa gttgattggt gctactgcgc attacgtgac
     2641 gacggatctt gatgaagggc cgatcatcga gcagggagtg gagcgcgtgg accacagcat
     2701 gacgccggat cagttgacgg caatcgggcg ggatgtggaa tgcgtgacgc tggcgcgcgc
     2761 ggtgcggtgg cacgtggagc acaggatctt gctgaatggg agtaagacgg tagtattcag
     2821 gtagggggcg ttcg
//
LOCUS       DATGBK010001833         1714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_253121, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001833 DATGBK010000000
VERSION     DATGBK010001833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253121"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..634)
                     /locus_tag="VKJ77_25825"
     CDS             complement(<1..634)
                     /locus_tag="VKJ77_25825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HMC48759.1"
                     /translation="MQLQQGSCGYSGRRRVGGGALFNRSLEKGIAVLRAFSAQRRTMT
                     LPEVAEATSITKSSAQRMIYTLEKLGYVKKYPRTKRYQLAAKAMQIGFNYLAADTLID
                     VANPFLTELTNVTGETTNLTEPDGVEMVYVARFVCTKFLPIHMPIGSRIPMYCTASGR
                     AYLAALPEDESRVLLQGSERVAHTQYTVTDLGEIDARLARARLDGYASNRE"
     gene            613..>1714
                     /locus_tag="VKJ77_25830"
     CDS             613..>1714
                     /locus_tag="VKJ77_25830"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC48760.1"
                     /translation="MSLVEVARPLPPSLWAATAEPAVDTPPLDTSVKTDVLIVGAGYT
                     GLSSALHLAGDGLKVCVIDANEPGWGASGRNGGQVIPGLKYDPDELIRRYGSGDGETL
                     AQIAGSAADTVFELIERHQIQCDATRHGWIQPTHSDKLLGTLHARARQWEARGAPVEL
                     LDRTQVSKRLGTETFVGGWIDKRAGSVQPLSYARGLARAAKAAGVAIHGATRAVALER
                     CSEGWRVRSAGGVVIDAKQVLLATNGYTDALWPGLAESVIAANSFIVATRPLPDDIAA
                     TVLPGREVASDARRLLLYFRKDAAGRLLMGGRGPFRDPRTSADWAHLERAARLMYPQL
                     EGIEYEYRWAGRIAITRDFLPHVHTPAEGLTIA"
BASE COUNT          329 a          558 c          494 g          333 t
ORIGIN      
        1 cttcccgatt agacgcatag ccgtcgagcc tcgctcgcgc cagccgcgca tcaatctcac
       61 cgagatccgt caccgtgtac tgcgtatgcg ctacacgctc actcccctgc agcagcacgc
      121 gtgactcatc ctccggcaac gccgccagat aagctctccc tgacgcagtg caatacatcg
      181 ggatgcggct gccaataggc atgtggatcg gcaagaactt cgtacagaca aaacgcgcaa
      241 cataaaccat ttcgacccca tccggttccg tcaggttggt cgtctccccc gtgacattcg
      301 tcagctccgt caggaacgga ttggcaacat caatcaacgt gtccgccgcc agataattga
      361 agccaatctg catcgccttc gccgcaagct gataacgctt cgtacgcgga tacttcttca
      421 cataccccag cttttcaagc gtgtagatca ttcgctgcgc cgaactcttg gtgatcgacg
      481 tggcctccgc cacctccgga agcgtcatcg tgcgccgctg cgcactgaac gctcgcaaca
      541 ccgcaatgcc cttctccaat gaccgattaa acagcgcacc tcctccgacg cgccttcgac
      601 ctgaatatcc acatgagcct tgttgaagtt gcacgaccgt tgccgccctc tctctgggcc
      661 gcgactgcgg aaccggccgt cgataccccg ccgctcgaca cgtccgtcaa gaccgacgtg
      721 ctgatcgtcg gggcgggtta tacgggtcta tcgagcgcat tgcatctcgc cggggacggc
      781 ttgaaagtct gcgtgatcga tgcgaatgaa ccgggctggg gcgcgtctgg ccgcaacggc
      841 ggccaggtga tccccgggct caaatacgat ccggatgaac tcatccgccg atatggttca
      901 ggcgatggtg aaaccctcgc gcagatcgcg ggcagtgccg cggacacggt cttcgagctg
      961 atcgaacgcc accagatcca atgcgatgcc acccgccacg gctggattca acccacgcat
     1021 tcggacaagc tgctcggcac gctgcacgcc cgcgcgcggc agtgggaagc tcgcggtgcg
     1081 ccggtcgaac tactcgatcg cacgcaggtc tcgaaacgtc ttggcactga aaccttcgta
     1141 gggggctgga tcgacaaacg cgccggcagc gtacagcccc tgagttatgc gcgtggattg
     1201 gcgcgcgcgg cgaaggcagc gggtgttgca attcacggcg ccacccgcgc cgttgcgctc
     1261 gaacggtgtt cggaaggatg gcgcgtgcga tctgcgggcg gtgttgtcat cgatgcgaaa
     1321 caggtgctgc tcgcgaccaa cggttatacc gatgcgcttt ggcccggcct cgcagaatct
     1381 gtgatcgcgg cgaacagttt cattgtcgca acccggcctt tacccgacga tattgcagcg
     1441 accgtgctgc ctggacgcga ggtcgcgtcg gacgcgcggc ggctcttgct gtatttccgc
     1501 aaggacgccg caggccgctt gctgatgggc ggccgcggcc ccttccgcga tccgcgtact
     1561 tctgctgatt gggcacatct tgaacgcgca gcgcggttga tgtatccgca actcgaaggc
     1621 atcgaatatg aatacagatg ggcgggacgc attgctatta cacgggattt cctgccgcat
     1681 gtgcacacac ctgccgaggg cttgacgatt gctc
//
LOCUS       DATGBK010001834         2153 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_91085, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001834 DATGBK010000000
VERSION     DATGBK010001834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91085"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..644
                     /locus_tag="VKJ77_25835"
     CDS             3..644
                     /locus_tag="VKJ77_25835"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004537715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HMC48761.1"
                     /translation="MFDMFVQSFWETLVMVGISGLVGAALGLPLGVLLYLTDRDGVLR
                     NLAVNRVMGGIVNAVRSTPFIILLVAVIPFTRLVVGSSIGTMAAVVPLTIAAAPFIAR
                     LVETALREVDRGLIEAAQAMGATTSQIVFKVLLPESLPGVVAGLTITFVSLVGYSAMA
                     GAIGGGGLGDLGIRYGYQRFLPEVMLTVVVILIVFVQLVQSLGDWLVRRLSHK"
     gene            688..1482
                     /locus_tag="VKJ77_25840"
     CDS             688..1482
                     /locus_tag="VKJ77_25840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011544895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HMC48762.1"
                     /translation="MQRRFILKLAAVFSATALLANVAQADETIKVGVTGGPHAQVMEV
                     VKQVAAKNGLNIKIVEFADYVQPNAALASGDLDANSYQHTPYLDAQVKDRGYKLIKIA
                     DTVTFPMGIYSKKFKSLDELPVGARIAVPNDPTNGGRALLLLQKNGLLKLRADAGLKA
                     TPLDIVDNPRKLKIVELDAAQIPRSLADVDAAAINTNFAMEAGLKPKQDAIAIEDPNG
                     PYSNIIAIRAVDKDKPWVAKLVAAYHSPEVKQFIEAKYAGAVIAAW"
     gene            1723..>2153
                     /locus_tag="VKJ77_25845"
     CDS             1723..>2153
                     /locus_tag="VKJ77_25845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48763.1"
                     /translation="MQFPPRFFTLACTLAALLCGSVPAQAEKLTLMAGGTSKIVYLPL
                     ILASQLGYFKDEGLEFEILSQPAGVDTATELLAGAIQGAVGFYDHTIDLQSRGKDVEA
                     LVVFSKSAGLVELVSKKSAAGFNTMADAKGKTLGVTGLGSST"
BASE COUNT          431 a          597 c          676 g          449 t
ORIGIN      
        1 aaatgttcga tatgttcgtc cagtcgttct gggaaacgct cgtgatggtg ggcatttccg
       61 ggctggtcgg cgcggccctc gggctgccgt tgggtgtgct gctgtatctg accgaccgcg
      121 acggcgtgtt gcgcaatctc gcagtgaacc gggtcatggg cggcatcgtg aatgcggtgc
      181 gctcgacacc gtttatcatt ctgctcgtcg cggtgatccc gttcacgcgg ctggtggtcg
      241 gctcgtcgat cgggacgatg gccgcggttg tgccgctgac tatcgcggcc gcgccgttca
      301 tcgcgcggct ggtcgaaacc gccctgcgcg aggtcgatcg cggcttgatt gaagcggcgc
      361 aggcaatggg cgcaaccacc agccagatcg tattcaaggt gttgctgccg gagtccttgc
      421 cgggggtggt tgctggtttg acgattacgt tcgtgtcact ggtcgggtat tcggcaatgg
      481 ccggtgcaat cggcggcggc ggtctgggcg acctgggcat tcgctatggg tatcagcggt
      541 ttttgccgga agtgatgctg acggtggtgg tgatcctgat cgtctttgtg cagctcgtgc
      601 agtcgctcgg tgactggctc gtgcgccgtc tcagccacaa atgatcagcc acaaataatt
      661 ttctctaaaa agctcaaagg gtagtccatg caacgtcgat tcattctcaa actggccgct
      721 gttttcagcg caacggcatt gcttgctaac gtggcccaag ccgacgaaac catcaaggta
      781 ggcgtgaccg gcggtccgca tgcacaggtc atggaagtcg tgaagcaggt agccgcgaag
      841 aatggcctga acatcaagat tgtcgagttt gccgattacg tccagccgaa tgcggcgctg
      901 gcttcgggcg atctcgacgc gaacagctat cagcacacgc cgtatctcga cgcgcaggtg
      961 aaggaccgag gctacaagct gatcaagatt gccgatacgg tcacgtttcc catgggtatc
     1021 tattcaaaga agttcaagtc gctggacgag ttaccggtgg gcgcgcgcat tgccgtgccg
     1081 aacgatccga ccaacggcgg ccgggcgttg ttgctgctgc aaaagaacgg cttgctgaag
     1141 ttgcgcgccg atgcaggctt gaaagccacg ccgctcgata ttgtcgataa cccgagaaag
     1201 ctgaagatcg tcgaactgga cgccgcgcaa atcccgcgct cgctcgcgga tgtggacgcc
     1261 gccgcgatca acacgaactt cgcgatggaa gccgggttga agccgaagca ggacgcgatc
     1321 gcgattgaag atccgaacgg cccgtactcg aacatcatcg cgattcgtgc cgtggacaag
     1381 gacaagccgt gggtggcgaa actcgtggcc gcctatcact cgcccgaagt gaagcagttt
     1441 attgaagcga agtacgcggg tgcggtgatc gctgcctggt aagcccggcc tcaggcaaga
     1501 cgcggtaaca aagtctggac aaaaaacgcg ctctctccct cacgggtttg agcgcgtagt
     1561 cgtttaaaca cggccaataa aagcggttaa accgcccgcc aagggtaaac gccgatattt
     1621 ttccaccccg gcagaaagca ggcagaaggc tttgcctttc tatacttgcc gcacattaaa
     1681 acaagatgcc ggtttgccac ggatagaagg agacgtttct cgatgcagtt tcccccccgc
     1741 tttttcacgc tcgcttgcac gctggccgcg ctcctgtgcg gctccgtgcc tgcccaggcg
     1801 gaaaagctga cgttgatggc gggaggtacc tccaagatcg tctatctgcc tttgattctt
     1861 gcgtcgcaac tcggttattt caaggacgaa ggcctcgaat tcgagatcct gtcccagccg
     1921 gccggcgtcg ataccgcgac ggaactgctg gccggcgcga tccagggggc ggtcggtttc
     1981 tacgatcaca ccatcgacct ccagagtcgc ggaaaggacg ttgaagcgct ggttgtgttc
     2041 agcaagagtg cggggctcgt cgagctggtc tcgaagaaat ccgcggcggg tttcaacacc
     2101 atggccgacg cgaaaggcaa gacattgggc gtgacaggac tgggatcgtc gac
//
LOCUS       DATGBK010001835         3331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_21684, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001835 DATGBK010000000
VERSION     DATGBK010001835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3331
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21684"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1047)
                     /locus_tag="VKJ77_25850"
     CDS             complement(<1..1047)
                     /locus_tag="VKJ77_25850"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006412816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SfnB family sulfur acquisition oxidoreductase"
                     /protein_id="HMC48764.1"
                     /translation="MSAIPQNTTTRSASIHSDGSSEKAPAYIIRDDAEAIARAHDVAA
                     RLAVHASERDRERRLPHEEIDWFSQAGLWAITVPKEYGGAGVSYVTLTEVIKIIAAAD
                     PSLAQLPQNHLGLVDVIALTGTPEQKQFFFGEIVRGKRFGNGFSEKGTKHVLDLKTRV
                     TAEDGEYVVHGTKFYSTGALFAHYVPILGLDDERRGWLAYIPAGTAGLQVIDDWSGFG
                     QRTTASGTVIADQVRVAASHVFPAFRVSDVPTLNGPISQIIQAAIDAGIGRAAIDDTL
                     KFVRERSRPWIDSGVERASDDPLVVHEVGHLHIQLHAAEALLERAARTLDAIATQGHA
                     PSEDDIARASVAVGE"
     gene            complement(1188..2228)
                     /locus_tag="VKJ77_25855"
     CDS             complement(1188..2228)
                     /locus_tag="VKJ77_25855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011545466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC48765.1"
                     /translation="MKLGASTEARSVVRTEFRHASIRTKLERSGILLLLVAMGAVFTW
                     REPAFLSVDNLFSILQAASIVALLAVGVSITLAVGGFDLSVGSTAATAQMAASYVLVV
                     WHGNALAAVAACLALGVGAGLFNGLLITRLRVPDQLATLGTLFLLAGLQLIPTGGRSL
                     ATGTILPDGTEATGAFPAAFLALGRARWLDVVPVPVIVLAVVTLVAVLVMEFTRWGRV
                     LYATGGNETAARLAGAPTARYRVAAYVASGVIASLGGALIAARVGRGDVGAGNSLLLD
                     AVAAALIGYAVWGAKRPNVLGSAVGAVFVGVLLNGLTMLNAPYYMQDFIKGALLVGAL
                     AFTFSIGRKGER"
     gene            complement(2232..>3331)
                     /locus_tag="VKJ77_25860"
     CDS             complement(2232..>3331)
                     /locus_tag="VKJ77_25860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017335419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48766.1"
                     /translation="AIAALVGLDIDLRAPLFTLPIATRQLVTLARALAVKPAVLILDE
                     PTASLSAAEAERLFTALDTLRERGVAMLLVSHRLGDLKRMADRVVIVRDGRLVANLKT
                     PIDFDDATETMIGRALPKARERKTVRSTADQGLQVRGLKLFPGADSPALDFDAARGEI
                     VAFAGPLGGGKSRLARTLFGIERVVSGTMTLDGEPWQPRSAAEAIRRGVFLVGEDRWS
                     SSLFPDSVPFASIEGTLSFPFLSNWFRNGWINRSRERREAASAIERFSIRCNGPADRV
                     VNLSGGNQQKVVLARLHAEPARVLLLDEPFQGVDAGARADIADVLRANAAGRVTLVFV
                     SAIEEAFEVADRVLHFDRSIIETNTEDLAGA"
BASE COUNT          692 a         1110 c          963 g          566 t
ORIGIN      
        1 ttcgccgacc gccaccgatg cacgggcaat gtcgtcttcg cttggcgcat gcccttgcgt
       61 tgcaatggcg tccagcgtac gcgccgcacg ctcgagcaac gcctcggcag cgtgcaactg
      121 gatgtgaaga tgacccacct catgtaccac gagcggatcg tcgctggcgc gctcgactcc
      181 gctatcgatc catggacgcg agcgctcgcg gacgaacttc agcgtgtcgt ctatcgccgc
      241 ccgcccgata cccgcatcga ttgccgcctg gatgatctgg gaaatcgggc cattgagcgt
      301 cggcacgtcc gatacgcgaa aggccggaaa tacgtgggat gccgcgactc gtacctggtc
      361 tgcgataacc gtaccgctcg cggtggtgcg ctgaccaaag cctgaccagt catcgataac
      421 ctgcaagccc gcggtacccg ctggaatgta ggcaagccag ccacggcgtt cgtcgtcgag
      481 accgaggatc ggcacatagt gcgcgaacag cgcaccggtc gaatagaact tcgtgccgtg
      541 gacgacgtac tcaccatcct cagcggtgac gcgcgtcttc agatcgagga cgtgctttgt
      601 gcccttctcc gaaaagccgt tgccaaaacg cttgccccgc actatctcgc cgaagaaaaa
      661 ctgcttctgc tcgggggttc ccgtgagcgc gatgacgtcg acgagaccca ggtggttctg
      721 gggcaactgt gccagcgacg gatcggctgc agcgatgatc ttgatgactt cggtcaatgt
      781 cacatacgac acgcccgcgc cgccatactc cttgggtacg gtgatcgccc acaagccggc
      841 ttgcgaaaac cagtcgattt cctcatgggg caagcgtcgc tcacgatcgc gctcgctagc
      901 atgtacggct aagcgagcgg ccacatcgtg ggcgcgcgca atggcctcgg catcgtcacg
      961 gatgatatac gcaggcgctt tctctgacga tccgtctgaa tggattgatg ctgaacgcgt
     1021 cgttgtattc tgcggaatgg ctgacatgct taccctttta tgtgtcggat cgacatcaat
     1081 ctagcagcgc catgaccggg ttcaaaccga acgataacgc taaggacatc aacggaacgc
     1141 ttctacgctt agctcgatta cttcttagaa gctgcggcca attgaattca ccgctccccc
     1201 ttcctgccga tgctgaacgt aaaggcgagc gcgccgacaa gcaatgcacc tttgatgaaa
     1261 tcctgcatgt aataaggcgc gttgagcatg gtcagtccgt tgagcaacac acctacaaac
     1321 acggcaccga cggctgagcc cagtacattg ggacgcttcg caccccacac cgcataaccg
     1381 ataagcgcgg cggcgaccgc atccagaagc agcgaattgc cggcgcccac gtcgccacgc
     1441 ccgacgcgcg cggcaatcaa cgcgccgccg agcgaagcga tcacgcctga tgcgacatac
     1501 gccgccacgc gataacgcgc cgtcggcgca cccgcgagcc gcgcggccgt ctcgttgccg
     1561 ccggtcgcat agagcacacg accccaccgt gtgaattcca tgacgagcac cgccaccagc
     1621 gtcaccaccg ccagcacgat gaccggcacc ggcacgacgt ccagccagcg ggcccggcct
     1681 aacgccagga aagccgccgg aaacgctccg gtggcctccg tgccgtccgg caggatcgtg
     1741 ccggtcgcaa gcgatcgccc acccgttgga atcaattgca ggcccgctag caggaacaag
     1801 gttccgagcg tcgcgagctg gtccgggaca cgaagacgcg tgatcagcaa gccattgaaa
     1861 agtcccgctc cgacacctaa cgcaaggcac gccgcaacgg cggcgagcgc gttgccatgc
     1921 cacacgacca gcacgtagct cgcggccatc tgcgccgttg cagccgtgct gccgaccgag
     1981 agatcgaagc cacccaccgc tagcgtaatg ctgacgccca cggccagaag cgcgacaatc
     2041 gacgcagcct gcaagatgct gaacagattg tccacgctca agaatgccgg ctcacgccat
     2101 gtaaataccg cacccatcgc gaccagcagc aacaagatgc cgctgcgttc cagcttcgtc
     2161 ctgatgctgg cgtgtctgaa ctccgttcga acgacggagc gtgcttcggt agaagcgcca
     2221 agtttcatgc gtcaggctcc ggcaagatct tcagtgtttg tttcaatgat cgaacgatcg
     2281 aagtgcagca cgcggtccgc gacttcaaac gcctcctcga tggcgctgac gaacaccagc
     2341 gtcacccgtc ctgctgcatt cgcccgcaac acatcggcaa tgtccgcccg cgcgccggca
     2401 tcgacgccct ggaacggctc gtcaagcaac aacacgcgcg cgggttctgc atgcaagcgc
     2461 gcgagtacga ctttttgctg attgccgccg gagagattga ccacgcgatc tgctggaccg
     2521 ttgcatcgaa tggagaagcg ctcgatggcg gacgcagcct cgcgacgttc gcgcgatcga
     2581 ttgatccacc cgttcctgaa ccagttcgac aggaatggaa aactcaatgt gccttcgatc
     2641 gatgcgaacg gcacgctgtc cggaaagagc gatgagctcc agcggtcctc gcctaccagg
     2701 aagacgccac gccgaattgc ctcggcggca gagcgcggct gccacggctc gccatcgagt
     2761 gtcatcgtgc cggagacaac gcgctcgata ccaaacagcg tcctggcaag ccgtgacttg
     2821 ccaccgccca agggccccgc aaacgcaacg atctcgccgc gggcggcgtc gaagtcgagc
     2881 gcggggctat ccgcacccgg gaacaatttc aggcctcgga cctgaagccc ctgatccgcc
     2941 gtcgatctca ccgtttttcg ttcacgcgcc ttcggcaacg cgcggccgat catcgtttca
     3001 gtggcatcgt cgaaatcgat cggcgttttc agattggcta ccagccggcc atcgcggacg
     3061 atgaccaccc tgtccgccat tcgcttgaga tcacctagcc gatgcgagac cagcagcatc
     3121 gcgacaccgc gctcgcgcaa cgtgtcgagt gcggtgaaga gacgctcggc ttccgcagcc
     3181 gagaggcttg ccgtcggttc atcgagtata agaacggctg gcttgaccgc cagcgcccgg
     3241 gccagcgtga cgagctgcct cgtcgcaatc ggcagcgtga acagcggcgc ccgcaggtcg
     3301 atgtcgaggc ccaccagcgc agcaatggcg c
//
LOCUS       DATGBK010001836         1752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322539, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001836 DATGBK010000000
VERSION     DATGBK010001836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322539"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..1228
                     /locus_tag="VKJ77_25865"
     CDS             131..1228
                     /locus_tag="VKJ77_25865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HMC48767.1"
                     /translation="MSEDGSNLINIRPANSPNAFDLRRVGAHPDYWYPVAWWDDLKAG
                     KTLGRRFAGEPIVLYRGKSGRVFALEDRCAHRQVPLHLGVVNGDQIKCHYHGWTYDQS
                     GKCVSVPYLGSERLPNGVKSYPVREVDGLIFVFPGDPALAESRLPTGLGSSQRKDYKT
                     RQLNREVACHYTFMHENLFDMNHQFMHRKQMGSIKAHCLGRQHGEAWAQVEYSFSRTA
                     GKSSVGEQVIVDLMRKRGEAKKDFSDHMRIRTDYPSQSLKVWVGRDIQQSNDPVLDVW
                     LGYTPLDAEQRTNRTYGYLSVKKPRVPGVIHAVWPFVVWFTENIFREDKEIVEYEQRA
                     YDAQLGDWNNEVFPALLDLRGVLARCGKPMA"
     gene            1304..1618
                     /locus_tag="VKJ77_25870"
     CDS             1304..1618
                     /locus_tag="VKJ77_25870"
                     /inference="COORDINATES: protein motif:HMM:NF024688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase
                     N-terminal domain-containing protein"
                     /protein_id="HMC48768.1"
                     /translation="MRESLESVARRLATQCRLLPMAASPEKYALLESIDTPADLRRLA
                     VRKLAMLAEQLRQFLVRSAATRGGHFAAGLGTVELTIALHCRDPWLFLARPSLGRRLA
                     AL"
BASE COUNT          349 a          536 c          536 g          331 t
ORIGIN      
        1 ccgaatttac ttggacgcat ccaacgtcgc aaaaatgatt cgatctcgaa acaaaagaag
       61 gctcatcgtt taagcgtccg agatatcaac gcgctagtct tgcgtcccag gtcgctgttc
      121 ggagtccgcg atgtcggaag atggttcaaa cctgatcaac atacgtccgg ccaattcgcc
      181 caacgcgttc gatctgcgtc gcgtcggcgc gcatccggat tactggtacc ccgtggcgtg
      241 gtgggacgac ttaaaggcgg gcaagacgct cggccgccgt ttcgccggcg agcccatcgt
      301 tctctaccgc ggcaaaagcg gtcgcgtgtt cgcgctggag gaccgctgcg cccaccgcca
      361 agtgccgctg cacctcggcg tcgtgaacgg cgatcagatc aaatgccact atcacggctg
      421 gacctacgat cagagcggca agtgcgtgag cgttccgtac ctggggtcgg agcggctgcc
      481 gaacggggtg aagagctatc ccgtgcgcga agttgacggt ctgatcttcg tctttccggg
      541 cgatccggcc ctggcggaaa gccgcttgcc gacggggctc ggttcttcgc agcgcaagga
      601 ctacaaaacc cggcagctga accgtgaagt ggcttgccac tacactttca tgcacgagaa
      661 tctgttcgac atgaatcacc agttcatgca tcgcaagcag atgggctcga tcaaggccca
      721 ttgcctcgga cggcaacacg gcgaggcatg ggcacaagtt gaatatagtt tcagccgcac
      781 cgccgggaaa tcttccgtcg gcgaacaggt tattgtcgac ttgatgcgca agcgcggtga
      841 ggcgaaaaag gacttttccg accacatgcg cattcgcacc gactacccga gccagagctt
      901 gaaggtctgg gtgggacgtg acatccagca aagcaatgat ccggtgcttg acgtgtggct
      961 agggtacacg ccgctcgacg ccgagcagcg caccaaccgc acctacggct acctgtcggt
     1021 gaagaagccg cgcgtgccgg gcgtcatcca cgcggtatgg ccctttgtgg tctggttcac
     1081 cgagaacatt ttccgcgagg ataaagagat cgtcgaatac gagcagcgcg cctatgacgc
     1141 gcagcttgga gactggaaca acgaagtgtt tccggcactg cttgacctgc gcggcgtgct
     1201 ggcgcgctgc ggaaaaccca tggcgtgaat cgacgtcgaa tatcagtcag cgcttcagtg
     1261 acacgccaag tagctcacgg gctcgggcgg caacggacat tgcatgcgcg agtcgctcga
     1321 gtccgttgcc aggcggctgg cgacgcagtg tagacttctg ccgatggccg cctcgcccga
     1381 gaaatatgca ctgctcgaat ctatcgatac acccgcggac ctgcgacggc tagcggtgcg
     1441 caagcttgcg atgctcgccg agcaattgcg gcagttcctg gtccgtagcg ccgccactcg
     1501 cggtggtcac tttgccgcag ggctcggaac ggtcgagctc acgatcgccc tgcattgccg
     1561 cgatccgtgg cttttccttg cacggccgtc attggggcgc cgcctcgccg cgctttagat
     1621 agcgatagaa actgtcgctg tcgatgttgg caccgcaaac gacgacaccg atgcgcctgc
     1681 cgcgcaagcg ttccgtcagg gggcccaaca ccgcagccgt tgccgccgcg cctgccggct
     1741 ccacggcgag tt
//
LOCUS       DATGBK010001837         2520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_45679, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001837 DATGBK010000000
VERSION     DATGBK010001837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45679"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1825
                     /locus_tag="VKJ77_25875"
     CDS             <1..1825
                     /locus_tag="VKJ77_25875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HMC48769.1"
                     /translation="LAFMSGLTGQFYKQFAMTIAISTVISAFNSLTLSPALAALLLKG
                     HDEPKDWLTRGMDRVFGGFFRQFNKVFKRGSENYGKGVTGVINRKALMMGVYVVLLCG
                     AVLMSKVVPGGFVPAQDKEYLISFAQLPNGASLDRTEAVIRQMTDIARKTPGVQSAVE
                     FPGLSVNGFTNSSSAGIVFVTLKPFGERKGAALSAGAIAGSLNQKYAAIKGSFIAVFP
                     PPPVLGLGTLGGFKLQLEDRGALGYAALNDATQAFIKRASQAPELGPTFSSYQINVPQ
                     LNVDLDRVKAKQLGVSVTDVFSTMQVYLGSLYVNDFNRFGRVYQVRVQADAPFRSSSE
                     DIGLLKTRNANGEMVPLSSLVKVTPTYGPEMVVRYNGYTAADINGGPAPGYSSGQAQA
                     AVERIAAETLPRGIKFEWTDLTYQQILAGNAAMWVFPISVLLVFLVLAALYESLTLPL
                     AVILIVPMSILSALVGVWLTKGDNNIFTQIGLMVLVGLSAKNAILIVEFARELEMQGR
                     SIVEAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGVAVFFGMLGVTL
                     FGLMLTPVFYVLLRKLAGGEHLVDKHGHNPHMRGVNATLEA"
     gene            1837..>2520
                     /locus_tag="VKJ77_25880"
     CDS             1837..>2520
                     /locus_tag="VKJ77_25880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009770663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HMC48770.1"
                     /translation="MKTLNTKRWLGLSALLGSLLVVAGCSLAPTYTKPDVSAPAAFKE
                     TPQETALAPSEQGTWKTAQPSEQALRGEWWTVFDDATLNDLEHQALDANQNLKAAAAR
                     VKESRAINQTARAGLFPTLDAGFGPTREKLSPASQFLPANANVPSQTLWRAEGSASYE
                     VDLFGRVSDSVKAANADTEQSEALFRSVQLALQADVAQNYFNLRELDSESDVFTRTVT
                     LREQALKLVQ"
BASE COUNT          467 a          692 c          838 g          523 t
ORIGIN      
        1 tctcgcattc atgtccggcc tgacgggtca gttctacaag cagttcgcga tgaccatcgc
       61 catctccacg gtgatctcgg cgttcaattc gctgacgttg tcgccggcat tggcagcctt
      121 gttgctgaag ggccatgacg agcccaagga ctggcttacg cgtggcatgg accgtgtgtt
      181 cggtggcttc ttccgccagt tcaacaaggt cttcaagcgt ggttcggaga actacggcaa
      241 gggcgtgacg ggtgtcatca accgcaaggc gctgatgatg ggcgtgtatg tcgtcctgct
      301 gtgcggtgct gtgctaatga gcaaggtcgt gcccggtggt tttgtgccgg cgcaggacaa
      361 ggagtatctg atcagctttg cgcaattgcc caacggtgcg tcgctcgatc gtaccgaggc
      421 ggtgattcgc cagatgacgg acatcgcgag aaagacgccg ggcgttcaaa gcgcggtcga
      481 gtttccgggc ttgtcggtga acggtttcac gaattcgtcg agcgcgggca ttgtgttcgt
      541 gacgctcaag ccatttggcg agcgtaaggg cgcagcactc tcggcgggtg ccatcgctgg
      601 ctcgctgaac cagaaatacg cggcaatcaa gggttcgttc attgctgtgt tcccgccgcc
      661 gccggtgctt gggctgggga cgctgggcgg cttcaagctg caactggaag accgtggcgc
      721 gctgggctac gccgcactga acgacgctac gcaggcgttc atcaagcgtg catcgcaggc
      781 gcctgaactg ggcccgacgt tctcgagcta tcagatcaat gtgccgcaat tgaacgtgga
      841 tctggaccgg gtgaaagcga agcaactggg cgtatccgtc accgatgtat tcagcacgat
      901 gcaggtctat ctcggctcgc tgtacgtgaa cgacttcaac cgtttcggcc gtgtgtacca
      961 ggttcgggtg caggcggatg caccgttccg gtcgagttcg gaggacattg gtctgctcaa
     1021 gacgcgtaac gcgaatggcg agatggtgcc gctgtcgtcg ctcgtcaagg taacgccgac
     1081 ctatggtccc gagatggtgg tgcgctacaa cggttacacc gctgccgaca tcaacggcgg
     1141 tccggctccg ggttattcgt cgggccaggc gcaggctgca gtggaacgca ttgcagctga
     1201 aacgctgccg cgcggcatca agttcgaatg gaccgatttg acgtatcagc agatcctcgc
     1261 gggcaatgcg gccatgtggg tgttcccgat cagcgtgctg ctcgtgttcc tcgtgctggc
     1321 tgcgctctat gaaagcctga cgctgccgct cgccgtgatc ctgatcgtgc ctatgagcat
     1381 tctctcggcg ctggtcggtg tgtggctcac gaagggcgac aacaacatct tcacgcagat
     1441 cggcttgatg gtgctggtgg gcttgtcggc gaagaacgcc atcctgatcg tggaatttgc
     1501 gcgagagctg gaaatgcagg gacgttcgat cgtggaggcg gctatcgaag ccagccgtct
     1561 gcgcttgcgg ccgatcctga tgacatcgat cgctttcatc atgggcgtgg tgccgctcgt
     1621 gctctcgtcg ggcgcgggtt cggaaatgcg ccatgcaatg ggcgtggcgg tgttcttcgg
     1681 gatgctcggc gtgacgctgt tcgggctgat gcttacgcca gtgttttatg tgctgttgag
     1741 aaagctggcg ggcggcgaac atctcgtcga caagcatggc cacaatccgc acatgcgcgg
     1801 tgtcaatgca acgctcgaag catgagagag attgaaatga aaacgttgaa tacaaagcga
     1861 tggctgggat tgtcggcgtt acttggatcg ttgctggtcg tcgcgggctg ctcgcttgcg
     1921 ccgacctaca cgaagcccga cgtgagcgcg ccggcagcct tcaaggaaac accgcaggaa
     1981 acggcgttgg cgccttcaga acagggcacg tggaagactg cgcaaccgtc ggagcaggca
     2041 ttgcgcggcg aatggtggac agtcttcgac gacgcgacgc tcaacgacct ggaacatcag
     2101 gcacttgatg cgaaccagaa cctgaaggca gcggccgcgc gcgtgaagga atcgcgcgcg
     2161 atcaaccaga cggcgcgggc aggcttgttc ccgacgctgg atgcaggttt cggtccgacg
     2221 cgcgagaagc tctcgccggc gtcgcagttc cttcccgcca atgcgaacgt accttcgcag
     2281 acgttgtggc gcgcagaggg gagtgcgtcg tatgaagtgg atctgttcgg tcgcgtgtcg
     2341 gactcggtga aggccgcgaa cgccgacacc gagcaaagcg aagcgctgtt ccggtccgtg
     2401 caacttgcgt tgcaggccga cgtggcgcag aactacttca acctgcgtga gcttgactcg
     2461 gaaagcgatg tctttacgcg taccgtgacg ctgcgcgagc aggcgctgaa gctcgtgcag
//
LOCUS       DATGBK010001838         1659 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_277141, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001838 DATGBK010000000
VERSION     DATGBK010001838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277141"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            186..1208
                     /locus_tag="VKJ77_25885"
     CDS             186..1208
                     /locus_tag="VKJ77_25885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018433565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HMC48771.1"
                     /translation="MATLKDVAVLAGVGMSTASRAISGRGPVSADALARVQAAIAELN
                     FRPSSIGRALSTQSLGMIGIFVPTFFGPYYGTILKQTDTELRKVHRHVVVATGCGDDS
                     PRDQAIESVQFLIGRDCDGVVVTSHDLHDDDLVKLHRMHPKLVFLNRDFAQMPEASFC
                     ADHHRGGVLAAQTLLAHKHKKIAVISGPFQASDNHARIAGFFEELARNGIDRAEVQLI
                     ESDFSPDGGYDSVRQLLASRKKFTGLFCANDTMAIGALSCLQQAGISVPDEMSVVGYD
                     DDYSAAFSAPGLTSVHIPTADLTRNAVRWLLNACYGTAYTIYREFPVTVTNRASVAAP
                     AKRMRT"
     gene            complement(1238..>1659)
                     /locus_tag="VKJ77_25890"
     CDS             complement(1238..>1659)
                     /locus_tag="VKJ77_25890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012746869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HMC48772.1"
                     /translation="LELRISLETESAGLAASRCDKTQIAAMRRALNDFERNLGEANGT
                     ISPDIRFHLEIAHATGNRYFVDIMTHLGTHMIPRTRLTATQIPPAQYADYLTRVNREH
                     EQICDAIERGDADSARTAMRLHLINSRERLRRAQEGV"
BASE COUNT          330 a          499 c          493 g          337 t
ORIGIN      
        1 tcagaccgct aacctcagaa cctagcaacc cggcattgac tccaaccgct aaccccagaa
       61 cctaacgccc cggcataaac ccccggaccg ctcccccaaa aaaccctgaa cagtgcgaac
      121 gaaaccccct ttaacaagag cttccaagtc aaaatgaagc tttcattcac ggagtaacag
      181 taacagtggc aaccctgaag gacgtcgcgg ttctcgccgg cgtaggcatg tccacggcat
      241 cgcgtgctat ctccggtcgc ggacccgttt ccgccgatgc gcttgcgcgc gtgcaggccg
      301 cgattgccga attgaatttc cggccttcat cgatcgggcg cgcactgtca acgcaatcgc
      361 tcggcatgat cggcatcttc gtgccgacgt tcttcggccc gtactacggc actatcctca
      421 agcagaccga tacggagttg cgcaaggtgc atcgccatgt ggtggtagcg acgggctgcg
      481 gcgacgactc gcctcgtgac caggcgattg aatcggtgca gttcctgatt ggccgcgatt
      541 gcgatggcgt agtggtgacg agccatgacc tgcatgacga cgatctcgtc aagctgcacc
      601 gcatgcaccc gaaattggtg ttcctcaatc gcgacttcgc gcagatgccg gaggcgtcgt
      661 tttgcgcgga tcatcatcgg ggcggggtgc ttgcggcgca aacgctgctg gcgcacaaac
      721 acaaaaaaat agccgtgatt tcagggcctt tccaggcttc ggacaatcat gcgcggatcg
      781 cgggattctt cgaagagctc gcgcgcaacg gtattgaccg cgctgaagtc cagttgatcg
      841 aatcggactt ttcgccggac ggcggatatg actcggtgcg gcaactgctg gcatcgagga
      901 aaaaatttac cggcctgttt tgcgccaacg acaccatggc aattggcgcg ttgtcgtgct
      961 tgcagcaagc aggcatctca gtgccggacg agatgtcggt agtgggttac gacgatgatt
     1021 attcggccgc gttttccgca ccgggactga catcggtcca catcccgacc gccgatctca
     1081 cgcgcaacgc cgttcgatgg ttgctcaacg cgtgttatgg caccgcgtac acgatctatc
     1141 gcgagtttcc ggtgacggtc acgaaccgtg cgtcggttgc tgctccggcg aaacgaatgc
     1201 gcacgtaaag tagcgtgacg tgacatcgtc cggacgttca aacgccttct tgcgcccgcc
     1261 gcagacgttc gcggctgttg atcagatgga gccgcatggc ggtacgcgcc gagtcggcgt
     1321 cacctcgctc gatggcatcg cagatctgtt catgctcgcg attcacgcgt gtcagatagt
     1381 ccgcgtactg ggcaggcgga atctgcgtgg cggtgaggcg ggtgcgcggg atcatgtggg
     1441 tgccgaggtg ggtcatgatg tccacgaaat agcggttgcc cgtggcatgc gcgatttcca
     1501 gatgaaagcg gatatcgggc gagatggtcc cgttcgcctc gcccaggttg cgctcgaagt
     1561 cattcagcgc gcgccgcatg gcagcgatct gcgttttatc gcatcgtgac gcagccagcc
     1621 ccgcgctctc cgtctccaga ctgatgcgca actcaagca
//
LOCUS       DATGBK010001839         2005 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_345979, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001839 DATGBK010000000
VERSION     DATGBK010001839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345979"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..578
                     /locus_tag="VKJ77_25895"
     CDS             <1..578
                     /locus_tag="VKJ77_25895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018423874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HMC48773.1"
                     /translation="RKRLLTFSNLEVIIALTIAGLINMAMVIMASGAFHSGHPEVAEI
                     ETAYHTLAPLLGIAAAGIFLLSLIASGISSSVVGTMAGQMIMQGFVGFRIPLWLRRAI
                     TMVPSFVVVWLGVNATQALVMSQVVLSLALPFPMAALVWFTCRTDVMGSYKNRTLIKT
                     AAIVAAFAVLSLNVILLLQTFGVDIPGLPSV"
     gene            744..1124
                     /locus_tag="VKJ77_25900"
     CDS             744..1124
                     /locus_tag="VKJ77_25900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006758221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2946 domain-containing protein"
                     /protein_id="HMC48774.1"
                     /translation="MFRRRLLKIGSILGLLAILMTSIAPTVSHALASHDRLGQALSTY
                     CSADPAFSETGNSDSSSHSGALHWQACAYCGLLAHFPILTGSTVAFAATASVTNAPLA
                     VVRAAVRALPLFIAAQPRAPPLVS"
     gene            1235..>2005
                     /locus_tag="VKJ77_25905"
     CDS             1235..>2005
                     /locus_tag="VKJ77_25905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011356298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48775.1"
                     /translation="MRTLLKRHAAPARAALIWAAGAACLAGSSGAWAHAVVGDRVFPA
                     TMAVDDPGVGDEFDFQYGHIKSPTDDGDNMNVNTASFEWDKLITSNLAFSIASAYVTQ
                     NAPNGGSAKGFDNITLGLKYLAYSNARREFMASVGVNTELGGTGARAIGDSSSTITPT
                     VYFGKGFGDLPSSLGFLKPFAITGEIGPNLTTSRSSPNSLDWGTTLQYSIPYLQQQVK
                     DLGLPQPLANLIPVVEFPMNTCTAGPCSGHTTGTINPGF"
BASE COUNT          357 a          634 c          576 g          438 t
ORIGIN      
        1 aacgcaaaag gctgctcacg ttctctaacc tggaagtgat cattgcgctg accattgcag
       61 gcctgatcaa catggccatg gtcatcatgg cgtcgggcgc ctttcactcg ggtcatccgg
      121 aagtggccga gattgaaacc gcctatcaca cgcttgcgcc gctgctgggc attgccgctg
      181 cgggcatttt cctgctgtcg ctgatcgcat cgggcatttc cagttcggtc gtgggaacca
      241 tggccggtca aatgatcatg caggggtttg tcggcttccg catcccgcta tggctgcgtc
      301 gcgcaattac gatggtgccg agtttcgtcg tggtctggct gggcgtgaat gctacgcaag
      361 cgctggtcat gagtcaggtc gtgctcagtc ttgcgctgcc gtttcccatg gcggcacttg
      421 tgtggtttac gtgccggaca gatgtcatgg gctcgtacaa gaaccggaca ctgataaaaa
      481 ccgcggccat tgttgcggcc ttcgcggtgc tgtccctcaa cgtgatcctc ttgctgcaaa
      541 cattcggcgt tgatattccc ggcttgccaa gcgtctaggt ggctgacacc ccgtatgggg
      601 gcaattgcgc tgcatgcagc cttaagccgc ctgaagcgtc acttcaagcg gcctaaggct
      661 gcatgacgat tattgcgttt tgaagtgatt aacgcgtggc ataatcggcg ccatattatc
      721 gaccgcccgg tgttgatcac agcatgttcc gccgtcgctt actgaagatc ggaagtatcc
      781 tgggattgct tgcaatcctg atgacttcga tcgcgccgac ggtctcgcac gcgctagcct
      841 cgcatgaccg gctaggccag gcgctcagca cgtattgctc ggctgacccg gccttcagcg
      901 aaacgggcaa cagcgactcc tcctcgcact ccggtgcact gcattggcaa gcttgcgctt
      961 attgcggcct gctcgctcac ttccccatcc tgaccggttc cacagtggcc tttgcggcta
     1021 ccgcgtcggt gactaatgct ccgcttgcgg tggtacgcgc ggcggttcgc gcgctgccgc
     1081 ttttcattgc cgcccagcct cgcgcgccac ctctcgtttc ctgactcatt tcgtgcctat
     1141 tgctcgcacc gctgacggcg gcgcgatgcc gcctcgtgcc aaacgcgacg gcgcccaata
     1201 gcgcgctcac aacgatcatg acaaaggaaa cacaatgcgt acgcttctca agcggcacgc
     1261 ggcgcctgcg cgcgccgctc ttatctgggc ggccggtgcc gcctgccttg cgggatcatc
     1321 cggtgcttgg gcacatgcgg tggtcggcga ccgggtcttc ccggcgacga tggccgtgga
     1381 cgatcccggc gtcggcgatg aattcgactt ccagtacggc cacatcaaaa gtccgaccga
     1441 cgatggtgac aacatgaacg tcaacaccgc ctcgttcgaa tgggacaagc tgattacgtc
     1501 gaatctggcg ttcagtattg ccagtgccta cgtcacgcag aacgcgccca acggcggctc
     1561 cgcaaagggc ttcgacaaca tcacgctcgg cctgaagtat ctggcctact ccaacgctcg
     1621 ccgtgagttc atggcatcag tcggcgtgaa cacggaactg ggcggcacgg gtgctcgcgc
     1681 gattggtgat tcgtcttcca ccatcacgcc gacggtctat ttcggcaagg gcttcggcga
     1741 ccttccatcg agtctcggct tcctgaagcc attcgcgatc acgggtgaaa ttggccctaa
     1801 cctgacgacg tcgcgatcgt caccaaactc gctcgactgg ggcacgacgc tgcagtacag
     1861 catcccgtat ctgcaacagc aggtgaaaga cctcggcttg ccgcagccgc tcgccaacct
     1921 gattccggtg gtcgagttcc cgatgaacac ctgcaccgcg ggtccgtgtt ccggccatac
     1981 gaccgggacc atcaaccccg gtttc
//
LOCUS       DATGBK010001840         1722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_253261, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001840 DATGBK010000000
VERSION     DATGBK010001840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253261"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(507..851)
                     /locus_tag="VKJ77_25910"
     CDS             complement(507..851)
                     /locus_tag="VKJ77_25910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008917819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HMC48776.1"
                     /translation="MTLNAGSFESILAMIVAVLFAVAGVVNLAGRGAVKRDFARWGYP
                     AWFRLLCGALELLSAVLLPGQQTRVLGLTLAGAIMIGALFTLLRNREPFRHLAPALIF
                     SALVVATLALRG"
     gene            complement(854..>1722)
                     /locus_tag="VKJ77_25915"
     CDS             complement(854..>1722)
                     /locus_tag="VKJ77_25915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018425170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HMC48777.1"
                     /translation="AISLGHQVTALVRDESSAAASALARLGVKLHGGDLREPQSFAAT
                     AGAADGVVHMASTNDASAAAADEAAVVAMLSHLHPGAAFVYTSGTWVYGNTEGEPATE
                     ASALNPTPLVAWRPAVEQQVLAIAARRSIAAVILRPAMVHGYGGGVFGMLAGMVRQIG
                     SVRIVGDGRNHWPAVHVDDLATAYLSAMERAASGDGRVTGQIFNVVAEDAVAVAEMGE
                     AIRASVGAERVEFWPLDDARKSLGPFADALALDQTVSGQHARQVLAWEPHGSGLIADL
                     SVQKHDEPSNGA"
BASE COUNT          353 a          566 c          497 g          306 t
ORIGIN      
        1 gcggtggccg cactggaatg ggcgaccacg tcgaccggtc tgtccttttg cccgagccga
       61 acctgaatgt cctcatcctc agggtagaaa agttcattcc actgcaggca ttcctgcatg
      121 atgagtgagc gtgctgccgc actccctgtt ttttatttcc gtaccacgtt gggacaagct
      181 accgggccat ccaacatcga acgaccgcag ccgacataaa cccgccattc gagtgagcgc
      241 cccttcaatc gacccgatga gcggacatgg ccgaccgctg cctcatgcat gagtggtcgt
      301 ttcctgtggc acgtaaagcg gtgatctgcg gcaggcgacc tgcatcgccc agccatcgct
      361 acaaaaagcg gacgcatgac gcacgtgatc aaactggagt tggtccaatg cctgctatcc
      421 atttgcgtat ttcaagtacc ggcagaacgg attacccgcg cggcctgtta gcgtcccggg
      481 ctcactcgca tgatggcgag taagcctcaa ccgcggagcg ccaacgtagc cacaacgaga
      541 gccgagaaga tcagcgctgg ggcgagatgc cggaacggct cgcgatttcg tagcaacgtg
      601 aagagcgcgc caatcatgat cgcaccggcc agcgtcaggc ctaaaactct ggtttgttgt
      661 ccaggaagaa gtactgcact cagcagctcg agagcgccac agagcaatcg aaaccatgcc
      721 gggtaacccc agcgtgcgaa gtcgcgcttc accgcgccgc gtcctgcgag attgaccacc
      781 ccggcaaccg cgaacagaac cgctacgatc atcgcgagaa tcgattcgaa agatccagcg
      841 tttaacgtca tcgtcatgct ccgttgcttg gctcatcgtg cttctgcaca gagaggtctg
      901 cgatcaggcc ggagccgtgg ggttcccacg caagaacttg ccgggcatgc tggccgctta
      961 ccgtctggtc gagcgccagt gcgtcagcaa atggcccaag tgatttgcga gcatcgtcga
     1021 gcggccaaaa ttcgacgcgc tcggcgccga ccgaggcccg aatcgcttcg cccatttcgg
     1081 caacggcaac ggcatcttcc gcgaccacat tgaagatctg tcccgtgact cgaccgtccc
     1141 cgcttgccgc ccgctccatc gcactcaggt aggccgtggc gagatcatcg acgtgaacgg
     1201 caggccagtg gttgcgacca tcgccgacga tcctcacact gccgatctga cggaccatac
     1261 cggcaagcat gccgaaaacg ccgccgccgt agccgtgcac catcgccggc ctgaggatca
     1321 ccgcggcaat cgagcggcgt gctgctattg ccagcacctg ttgctccact gcgggccgcc
     1381 aggcgaccag tggtgtcggg ttcagcgccg atgcttcagt cgcgggctcg ccctccgtat
     1441 tgccgtagac ccaggtgccc gacgtataga caaacgccgc gcccggatgc aaatgcgaaa
     1501 gcatcgctac aaccgcggcc tcatcagcag cggcagcgga agcatcgttg gtcgacgcca
     1561 tgtgcaccac gccatcagcg gcgccggcag tcgcagcgaa agactgtggc tcacgcaagt
     1621 cgccgccatg cagtttcacg ccgagacgtg ccagcgcgct cgcggccgcc gagctttcgt
     1681 cgcgcaccag cgctgtcacc tgatggccga ggctgattgc tt
//
LOCUS       DATGBK010001841         2451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_160616, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001841 DATGBK010000000
VERSION     DATGBK010001841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160616"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1631)
                     /gene="nuoG"
                     /locus_tag="VKJ77_25920"
     CDS             complement(<1..1631)
                     /gene="nuoG"
                     /locus_tag="VKJ77_25920"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012213012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HMC48778.1"
                     /translation="MVELEIDGKSVEVPEGSMVIQAAHKVDTYIPHFCYHKKLSIAAN
                     CRMCLVEVEKMPKAVPACATPVSAGMIVRTKSDKAVKAQQSVMEFLLINHPLDCPICD
                     QGGECQLQDLAVGYGKSQSRYNEEKRVVFHKNVGPLISMEEMTRCIHCTRCVRFGQEV
                     AGVMELGMLGRGEHSEITSFVGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSR
                     RKSISPHDSVGANLVVQVKNNRVMRVLPMENEAINECWISDKDRFSYEALNSDERLTQ
                     PMLKQGGKWIETDWQTALEYVAKGIKGITADHGANQIAALATPHSTVEELYLLKQFAE
                     GVGSPNVDFRLRQSDFSAPVSDSAPWLGMKIADLTNIDTAFVVGSFLRRDHPLFAARL
                     RQAAKGGAMLTFLNATNDDSLIPAAHRVVAAPSEWLDRLGSLAAAVAEARGVAVPEAF
                     AGHEASAAAKDIAASLSAGDKRVVLLGNSAVQHPQFAQIQAVCQWIADNTGATLGYLT
                     EAANTVGAHLVDALPGEGGLNAREVFEQPRKGYVL"
     gene            complement(1663..>2451)
                     /locus_tag="VKJ77_25925"
     CDS             complement(1663..>2451)
                     /locus_tag="VKJ77_25925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012432380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase-F iron-sulfur
                     binding region domain-containing protein"
                     /protein_id="HMC48779.1"
                     /translation="EETALLESLEGKKGQPRFKPPFPASFGVYGKPTTINNTETFAAV
                     PFLLAIGPQKYLEIGKPNNGGTKIFSVAGDVNFPGNFEVPLGTSFATLLDLAGGVRGK
                     SVKAVIPGGSSAPVIPGEIMLNTDMDYDAIAKAGSMLGSGAVIVMNETRCMVRSLLRL
                     SYFYYEESCGQCTPCREGTGWLYRVVHRIEHGLGRKEDLDLLNSVAENIMGRTICALG
                     DAAAMPVRGMLKHFWDEFEYHVEHKHCLVDGHAHHAPASEALTA"
BASE COUNT          478 a          796 c          674 g          503 t
ORIGIN      
        1 aacagcacat aacccttgcg cggctgctcg aatacttcgc gtgcgttcag tccgccttcg
       61 cccggcagtg catcgacgag atgtgcgccc accgtattgg ccgcttccgt cagataaccc
      121 agcgtggcgc ccgtgttgtc cgcgatccac tggcataccg cctggatctg cgcaaactgc
      181 ggatgctgaa ccgcgctgtt gccaagcaac accacgcgct tgtcacccgc cgacaacgac
      241 gctgcaatat ctttcgctgc cgccgacgct tcatgtccag cgaacgcttc cggcactgcg
      301 acgcctcgtg cttcggccac cgcggcagcc agactaccga ggcggtcgag ccattccgac
      361 ggcgccgcaa ccacgcgatg cgcagccggg atcagcgagt catcattggt cgcgttcagg
      421 aacgtgagca ttgccccgcc cttggcggcc tgacgcagac gtgccgcgaa cagcggatga
      481 tcgcgacgca ggaacgagcc gactacaaac gccgtatcga tattcgtcag gtctgcgatc
      541 ttcataccga gccacggcgc gctgtccgac accggcgccg aaaagtcgct ctgacgcaga
      601 cggaagtcga cgttcggcga tcccacacct tcagcgaatt gcttcagcag atacagttct
      661 tcaacggtgc tatgcggcgt agccagggca gcgatctgat tcgcgccgtg atcggccgta
      721 atgcccttga tacccttcgc cacgtattcc agcgccgttt gccagtctgt ctcgatccac
      781 ttgccgccct gcttcaacat gggctgcgtg agacgttcgt cgctgttcag cgcttcatac
      841 gagaagcgat ccttgtccga gatccagcat tcgttgatgg cttcgttttc catcggtaga
      901 acgcgcatca cgcggttgtt cttcacttgc acgaccaggt tcgcgccgac ggaatcgtgc
      961 gggctgatcg acttgcggcg cgacaactcc cacgtacggg cgctgtagcg gaacggcttg
     1021 ctcgtcaacg cgccgaccgg gcacaggtcg atcatgttgc ccgacagctc cgagtccact
     1081 gtcttgccaa cgaacgacgt gatctccgaa tgctcgccac gacccagcat gccgagttcc
     1141 atcacgccgg ccacttcctg accgaaacgg acacaacgcg tgcaatgaat gcagcgcgtc
     1201 atctcttcca tcgagatcag cggtccgacg ttcttgtgga acaccacgcg cttttcttcg
     1261 ttgtagcgcg attgcgactt gccgtagccc acggccagat cctgcaactg acattcgccg
     1321 ccctgatcgc aaatcgggca atcgagcggg tgattgatca gcaggaattc catcacggac
     1381 tgctgcgcct tcacagcctt gtccgatttc gtgcgcacga tcatgcccgc cgacaccggc
     1441 gtggcacagg cgggaaccgc cttcggcatt ttctcgactt cgaccaggca catccggcag
     1501 ttcgccgcga tcgacagctt cttgtgatag caaaagtgag gaatgtatgt atcgacctta
     1561 tgcgcagcct ggatcaccat gctgccttca ggcacttcta cacttttgcc gtcgatttct
     1621 aattcaacca tgatggggaa cggtccttgg cctgatcact gatcacgcgg taagcgcttc
     1681 ggacgccggc gcatgatgcg catgtccgtc gacgagacaa tgtttatgct cgacgtgata
     1741 ttcgaattcg tcccagaagt gcttcagcat gccgcgcacc ggcatggccg ccgcgtcgcc
     1801 gagagcacag atggtgcggc ccatgatgtt ttcggcgacc gagttcagca gatccaggtc
     1861 ttccttgcgc ccgagtccat gttcgattcg atggacaacg cgatacagcc agcccgtacc
     1921 ttcacggcaa ggcgtgcatt gaccacacga ctcttcgtaa tagaagtacg aaagacgcag
     1981 cagcgagcgg accatgcagc gcgtttcgtt catcacgatt accgcgcccg aacccagcat
     2041 tgacccggct ttcgcgatgg cgtcgtagtc catgtcggtg ttcaacatga tctcgcccgg
     2101 aatcaccggt gccgacgatc cacccgggat caccgctttc accgacttgc cgcgcacgcc
     2161 gccagccaga tcgagcaagg tggcgaacga agtacccagc ggcacttcaa agttacccgg
     2221 gaaattgacg tcgccggcaa ccgagaagat cttcgtgccg ccgttgttcg gcttgccgat
     2281 ctcaagatac ttctgcgggc cgatagccag caggaacggc acggctgcga acgtttccgt
     2341 gttgttgatc gtggtcggct tgccgtacac gccaaagctc gccgggaacg gcggcttgaa
     2401 gcgcggctgg cctttcttgc cttccagcga ctcgagcaac gcagtttctt c
//
LOCUS       DATGBK010001842         2135 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_91212, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001842 DATGBK010000000
VERSION     DATGBK010001842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91212"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..649)
                     /locus_tag="VKJ77_25930"
     CDS             complement(<1..649)
                     /locus_tag="VKJ77_25930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006763313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="HMC48780.1"
                     /translation="MNDDQLLRYSRHILVDEIGIEAQQRFLDAHAIIIGAGGLGSPAA
                     MYLAAAGVGEITLVDADSVDLTNLQRQILHVSASVGEPKVDSARATLAALNPGVKVTT
                     AAVRADAAWLDAHVPHATVVLDCTDNFATRHAINAACFAHGIPLVSGAALRFDGQIST
                     FDFRSAQSPCYACVFPPDEAFEEVACSTMGVFSPTVGIIGTMQAAEALRVIGGFGT"
     gene            complement(953..>2135)
                     /locus_tag="VKJ77_25935"
     CDS             complement(953..>2135)
                     /locus_tag="VKJ77_25935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018434732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HMC48781.1"
                     /translation="RGMTLDNAVKQMRGDPGTKVTLTIFRKTDDRTFPVTVTRAIIRV
                     QSVKMKVPAPGYGYIRITSFQERTVPDLAAKLQDLARQQPDLKGLVLDLRNNGGGLLQ
                     SAVGVAGAFLPDNAVVVSTNGQIADAKQTFRDTYDNYRLPSFDTDPLKNLPEIFKKVP
                     MVVLTNAYSASASEIVAGALQDHHRALIVGKTTFGKGSVQTVRTMTADTALRLTTAYY
                     YTPSGRSIQNKGIRPDVPVDQYAEGDPDDALVTREVDYSNHLANTQDPNEKKEQEARE
                     ADRLEQLRILEEQNDKKTPEQRRKDRERKPVEFGTADDFMLTQALNKLEGKPVQESKS
                     YSERKLAQDKPAPSASAPIAVKPALPATPGADTTPASGVPGADATPAPASAPVPASAI
                     Q"
BASE COUNT          384 a          628 c          702 g          421 t
ORIGIN      
        1 tcgtaccgaa cccgccaatc acgcgtagcg cctccgccgc ctgcatcgtt ccgataatcc
       61 cgaccgttgg cgagaagacg cccattgtcg agcaggcgac ttcctcgaac gcttcgtcgg
      121 gcggaaacac gcatgcgtag cagggggatt gcgccgagcg gaagtcgaag gtgctgatct
      181 ggccgtcgaa gcgaagtgcg gcaccggaga cgagcgggat gccgtgagcg aaacaggcag
      241 cgttgattgc gtggcgagtg gcgaagttat cggtgcaatc gaggacgacg gtggcgtgtg
      301 ggacgtgggc gtcgagccac gctgcatcgg cgcgaacggc ggctgtggtc acctttacgc
      361 cggggttgag cgcggcgagc gtagcgcggg ccgagtccac cttcggttca ccgaccgatg
      421 cgctcacgtg cagaatctgg cgctggagat tggtgagatc gacggaatcg gcatcgacca
      481 gcgtgatctc gccgacaccc gccgccgcca gatacatcgc agccggagac ccgagcccac
      541 ccgcaccgat gatgatggcg tgtgcatcga gaaagcgttg ttgcgcttca atgccgattt
      601 catcgacgag gatgtgtcgg gaatagcgga gaagctgatc gtcgttcatc gagcgctcaa
      661 gtgggctacg accggaacgc ctggcagcgg gaaacaggcg cgtgatcgcg aaaccgctat
      721 tttaatcgcg tgtcgagggg agttggcgca gagcacttac tccggtccca tgcaatcacg
      781 ggatgccggg gtcaggcgga gggcacaagc gagaggcgct gggaggcaga agggggcaac
      841 tggcgcggca cctatgttgt gccggaagac ggtgaggtta attctttgcc gcttgctgct
      901 gaatcagccg gcgcggctat caagcgcgcg ccgactgaaa ccgagacaaa acttactgta
      961 tagctgaagc gggcaccggt gctgacgcgg gcgccggcgt ggcgtcggca cccggcacac
     1021 cggaggccgg cgttgtatcc gcccctggtg tagccggcaa cgctggtttg acagcgatag
     1081 gagccgaagc cgatggcgcc ggcttatcct gcgccagctt ccgttcggaa taagacttcg
     1141 attcctgcac cggcttgcct tccagcttgt tcagcgcttg cgtgagcatg aagtcatcgg
     1201 ccgtgccgaa ctcgacaggc ttgcgctcgc gatccttacg gcgttgctcc ggcgtcttct
     1261 tgtcgttctg ctcttcaaga attcgcagtt gctcgagccg gtccgcttcg cgcgcttctt
     1321 gttccttctt ctcgttcggg tcctgcgtat tggccaggtg gttcgaataa tccacttcgc
     1381 gcgtgacgag tgcgtcgtcc ggatcaccct cagcgtattg atcgaccgga acgtccgggc
     1441 ggatgccctt gttctggatc gacctgccgc tcggcgtgta gtaataagca gtagtcaggc
     1501 gcagcgcggt gtcggcggtc atcgtccgga cggtctgcac agagcccttg ccaaacgtgg
     1561 tcttgccgac aatcaacgcg cgatgatgat cctgcagcgc acccgcgacg atttcggagg
     1621 ccgacgcgga gtacgcattg gtcaacacca ccatgggcac cttcttgaag atttcaggaa
     1681 ggttcttcag cggatcggtg tcgaaggagg gcaggcgata gttgtcgtac gtatcgcgga
     1741 aggtttgctt cgcgtccgcg atttgtccat tcgtcgacac caccacggcg ttatccggca
     1801 ggaacgcacc ggctacgccg accgcgctct gcagcaaacc gcctccattg ttacgcaggt
     1861 caagcacgag gcccttcagg tccggctgct ggcgcgcgag atcctgcagc ttcgcggcga
     1921 gatccggcac ggtgcgttcc tggaagctcg tgattcggat gtagccgtaa cccggtgccg
     1981 gaaccttcat cttcacgctc tgcacgcgga tgattgcgcg cgtgaccgta accgggaagg
     2041 tccggtcgtc ggtcttgcgg aagatggtca gcgtgacctt cgtgcccgga tcgccgcgca
     2101 tttgcttgac ggcgttatcc agcgtcatgc cgcgt
//
LOCUS       DATGBK010001843         5456 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_207533, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001843 DATGBK010000000
VERSION     DATGBK010001843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 5456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5456
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207533"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..714)
                     /locus_tag="VKJ77_25940"
     CDS             complement(<1..714)
                     /locus_tag="VKJ77_25940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011295690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HMC48782.1"
                     /translation="MPTRNKQPDDTSPHPSRTGFVRVRGAREHNLRNVDVDIPRDALV
                     VFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARRLIDQVGVPEVDSIEGLPPAVAL
                     QQQRGTPNARSSVGSVTTLSSLVRMLYSRTGTYPAKQPMLFAEDFSPNTVQGACPTCH
                     GLGRVYEVTEQSMIPDDSLTIRERAVAAWPPAWHGQNLRDILVTLGFDVDKPWRDLPK
                     KDRDWILFTDETPTAPVYAG"
     gene            1391..3046
                     /locus_tag="VKJ77_25945"
     CDS             1391..3046
                     /locus_tag="VKJ77_25945"
                     /EC_number="2.6.1.1"
                     /EC_number="4.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006046765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate transaminase/aspartate
                     4-decarboxylase"
                     /protein_id="HMC48783.1"
                     /translation="MAKSTKAGSQEQSKIAALSPFELKDELIKAAGGGAVERPANAAM
                     LNAGRGNPNFLATIPRHGFWQLGLFAMRESERSFAHMPEGLGGFPKREGLEERFEIFA
                     RDNKGVPGIDFLRGVLSYVRDQLGLNGSEFLYEMCEGILASNYPVPDRMLKLSEVIVA
                     QYLKKEMICKHPFVGDFDIFATEGGTAAMTYIFNTMRENHLIKPGDTIALGSPIFTPY
                     IEIPTLNDYQLNVVNLDADVELGWQYSKKELDKLRDPKVKAFFLVNPSNPPSVKMNTE
                     SLEYIAEIVKERPDLILLTDDVYGTFADDFVSLFALCPKNTILVYSYSKYFGATGWRL
                     GTIAMHRENVIDELIRKLPKEQRKELHERYESITTEPENLKFIDRLVADSRTVALNHT
                     AGLSTPQQVQMVLFSLFALMDTPEAYKNALKRLIRGRKEALYREIGISFDDSDENQVD
                     YYTIIDLEFLGNRAYGPEFVTWLFENTEPSELLFRLAKEARVVLLPGRGFGTQHPSGR
                     VSLANLNESDYKAIGRAMRKLMVEYVERYNAATGKSLDKNKVL"
     gene            complement(3194..4261)
                     /gene="motB"
                     /locus_tag="VKJ77_25950"
     CDS             complement(3194..4261)
                     /gene="motB"
                     /locus_tag="VKJ77_25950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011350593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HMC48784.1"
                     /translation="MADSPSREPMQSVLAPTVVVRRKKKSGHAGHHGGAWKIAYADFV
                     TAMMAFFLLMWLLGSTSKYDKQGIEDYFNTPLSTVFGGKDGSGAARTSVIEGGGRDLS
                     SSRPGEATKSQTQPLPKTTERAAATATAAAAAKDDAQRLQQLKQKLSALIERTPALAA
                     YKDQIRIDITSEGLRIEIVDSLKRPMFPSGSAKLESYVVTILSQIGASLNDVDNRVSI
                     AGHTDAVPYSGGQAGYSNWELSSERANAARRALIAGGMNEGKILQVRGLADVLPLNKA
                     VADEPTNRRISILVLNKAAEQRFFADGGRTAVDESQPASSMIPAAVGSQPASAVIPPV
                     VGEPLAKPHAASATAGPASKS"
     gene            complement(4331..5200)
                     /gene="motA"
                     /locus_tag="VKJ77_25955"
     CDS             complement(4331..5200)
                     /gene="motA"
                     /locus_tag="VKJ77_25955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012403499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HMC48785.1"
                     /translation="MFVVIGWVLVIGSVIGSFLGVGGHLLALFQPFELLCIFGAAMGA
                     FVVSNPVTTLKKTIKVLPSAFKAGGYSKEKYVQLIALLYELLQKARKEGMMALEVDVE
                     APQNSPTFKKYEHVLNDHHLLEFIVDYLRMMSSGNINALEMQDLMDEELETHHAETSL
                     ASGAIQKMADGLPAFGIVAAVMGVVHTMGSVGAAPAILGEMIAGALVGTFLGILLAYG
                     FFGPLADLLAAKGQAEAKPFQCVKSVLLASMNGYAPAIAVEFGRKVLFIADRPTFKEL
                     DDAVRATKQTKSA"
BASE COUNT         1108 a         1598 c         1630 g         1120 t
ORIGIN      
        1 gccggcatac acgggagcgg tcggtgtctc gtccgtgaac aggatccagt cgcggtcttt
       61 cttcggcaag tcgcgccacg gcttatcgac atcgaacccc agcgtgacca ggatgtcgcg
      121 caggttctga ccatgccatg ccggcggcca cgcagcgact gcgcgctcgc gaatagtcag
      181 cgagtcgtcg gggatcatcg attgctcggt tacctcgtag acccgcccca gaccgtgaca
      241 cgtgggacac gccccttgca ccgtgttcgg cgagaaatct tcggcgaaca gcatgggttg
      301 tttcgccggg taggtgccgg tgcgcgaata cagcatgcgc acgaggctgg acagcgtggt
      361 cacgctgccc acagacgagc gtgcgttggg cgtaccgcgt tgctgctgca gagcgacagc
      421 gggcggcaag ccctcaatgg aatccacttc cggaacaccg acctgatcga taaggcgacg
      481 cgcatagggc gccacggatt cgaaataccg gcgctgcgct tcggcgtaga gcgtgccgaa
      541 cgccagagac gacttgcccg atcccgagac gccggtaaag acgacgagcg cgtcgcgcgg
      601 aatgtcgaca tcgacgttgc gcaggttgtg ctcgcgggcg ccccgcaccc gcacgaagcc
      661 ggtccgggaa ggatggggtg atgtgtcgtc gggctgcttg tttcgagttg gcatgcgctt
      721 taaggatgtt gtgtgattca gtttgcctgc acggcagcga ggatggcaga cagtttaagt
      781 ggctggcgaa attgctgtcg atccggcagg ggcattgggc gcacggggca tgcccgaata
      841 ctggcgttct gatatccggg atatttaccc gagcgcgcgg aaggggttta agcaacccgt
      901 gtcaaatcgg ctaattagtc tgttatgttt ctgttcaacg cgtaatttca ttcatacgcg
      961 agtctgtcca tcattgcgat cggtaatacg gtcgagtgcc aagttcttta aacgctgttt
     1021 aattacatcc gccgcgacca ttgccagcaa aagccggcgc gcgcaagccc cacgggaaaa
     1081 cataaagcga ttgcgtttaa agttttcccc cctagactat taacttgcaa gcctgcggac
     1141 ggtgtcggga ttatttcatt gcccaaaatt atcgtggcca taatgcataa acaatctgag
     1201 tgtttatttg cggcattgtt gcgaagatca gttgaaaagg agtggtgtag tgccgggtta
     1261 atgtgttgca accgggctgc aatcaaagac gcataacctg aaagttcatt gccgcttttc
     1321 tcccaaaggg actgacgttt ccccgagaac gtcgctcttt caagcagtcg atcatttctg
     1381 gaggtgttgg atggcaaaat ctacaaaggc gggctcgcag gaacaatcca agatcgcggc
     1441 gctcagcccg ttcgaactca aggacgaact gatcaaggcc gccggcggcg gcgcggtcga
     1501 gcgtcccgcc aacgcagcca tgctgaacgc aggccggggc aatccgaact tcctcgccac
     1561 cattccgcgc cacggcttct ggcaactcgg ccttttcgcc atgcgcgagt cagagcgctc
     1621 cttcgcccac atgcccgaag ggctgggcgg ctttccgaag cgcgaggggc tggaagagcg
     1681 ctttgaaatt tttgcacgcg acaacaaggg cgttcccggc atcgacttcc tgcgcggcgt
     1741 gctgtcatat gtgcgcgacc agctcggtct gaatggcagc gaattccttt acgaaatgtg
     1801 cgaggggatt cttgcgtcga actatccggt gccggaccgg atgctgaagt tgtcggaggt
     1861 gattgttgcg cagtacctga agaaggaaat gatctgcaaa catccgttcg ttggcgactt
     1921 cgatatcttc gcgacggaag gcggcaccgc cgccatgacc tacatcttca acacgatgcg
     1981 cgagaatcac ctgatcaaac cgggcgacac catcgcgcta ggctcgccta tcttcacgcc
     2041 gtacatcgaa atccccacgc ttaacgacta ccagttgaac gtggtcaacc tggacgccga
     2101 cgtggaactc ggctggcaat attcgaagaa ggaactcgac aagctgcgcg atccgaaggt
     2161 gaaggcattc ttcctcgtga atccgagcaa tccgccttcc gtcaagatga ataccgagag
     2221 cctggagtac atcgcggaga tcgtgaaaga acggccggac ctgattctgc tgaccgacga
     2281 cgtatacggc accttcgccg acgacttcgt ctcgctgttc gcgctgtgtc cgaagaacac
     2341 catcctcgtg tattcgtatt cgaagtactt cggtgcgact ggctggcggc ttggcacgat
     2401 cgccatgcac cgcgagaacg tgatcgacga actgattcgc aagctgccga aggaacagcg
     2461 caaggaattg catgagcggt acgagtcgat caccaccgag ccggagaacc tgaagttcat
     2521 cgaccgcctg gtggccgaca gccgtaccgt cgcgctgaac cacacggcgg ggctctccac
     2581 gccgcagcaa gtgcagatgg tgctgttctc gctcttcgcg ctgatggaca cccctgaggc
     2641 ctacaagaac gcgctcaagc gcctgattcg aggccgcaaa gaggcgttgt acagggagat
     2701 agggatatcg tttgacgaca gcgatgagaa ccaggtcgat tactacacca tcatcgacct
     2761 cgaattcctt ggcaatcgtg cgtatgggcc ggagttcgtt acgtggctct tcgagaacac
     2821 cgagccctcc gagttactgt tccggctcgc gaaagaagca cgcgtcgtgc tcttgccggg
     2881 acgcgggttc ggcacgcaac acccgtcggg ccgcgtgtcg ctcgccaacc tcaacgagag
     2941 cgactacaag gcgatcggcc gcgcaatgcg caagctgatg gtggaatatg tcgagcgcta
     3001 taacgcagca acggggaagt cgctcgataa aaacaaggtg ctctgagcgt tctgcgacgc
     3061 ttggtacttc aggcgtcgaa tgaaaacggg ccgccgggta tgggcgaggg cgtgcaagcg
     3121 cgctttcgcc tgtcgtcgcg ctatgctggc ggctcatctt caagctgggg acaaagcgat
     3181 gaccgagagc gtgctagctt tttgaggctg gcccggcggt tgccgacgca gcatgcggct
     3241 tggccagtgg ctcccccacg accggcggaa tgacagcgct tgcgggctga gacccgacag
     3301 ccgccgggat cattgagctt gccggctgcg actcatccac ggcggtgcgc ccgccgtccg
     3361 cgaagaacct ttgttcggcg gccttgttca aaaccaggat gctgatgcgc cggttagtgg
     3421 gttcatcggc gactgccttg ttgagcggca acacatcggc tagtccgcgc acttgcagga
     3481 tcttgccttc gttcatgccg cctgcaatca acgcgcggcg cgcagcgttc gcccgttcgc
     3541 tcgacaactc ccagttcgaa tatcccgctt ggccgcccga gtacggcacg gcgtcagtgt
     3601 gtccggcgat cgacacgcgg ttatccacgt cgttgagcga ggcgccgatc tgcgagagga
     3661 tggtcaccac atacgattcc agcttcgcac tgcctgaagg gaacatcggc cgcttgagtg
     3721 agtcgacgat ctcgatgcgc aatccttcgc tcgtgatgtc gatacggatc tgatccttgt
     3781 acgcggccag tgcaggcgtg cgttcgatca acgcactgag cttctgcttg agttgctgca
     3841 agcgctgcgc gtcgtccttg gctgcggcag ccgcggttgc ggtcgcggcc gcgcgttcgg
     3901 tcgtcttcgg caacggctgg gtctggctct tggttgcctc gcccggacgc gaactggaga
     3961 gatcacggcc accgccttcg atcacgcttg tgcgtgcggc gccgctaccg tccttgccgc
     4021 cgaagactgt cgacagcggc gtgttgaaat agtcttctat accctgcttg tcgtacttcg
     4081 aggtcgagcc gagcagccac atgagcagga agaacgccat catggccgtc acgaaatccg
     4141 cgtatgcgat cttccatgcg ccgccatgat gaccagcgtg cccggacttt ttcttgcgtc
     4201 gcactacaac ggtcggtgcc agcaccgact gcatgggctc gcgagaggga ctgtcagcca
     4261 tgagagaacc tcttggtgat ctgctggatc tgtgtgatac ggccgatgtg cgccggacgg
     4321 gacaggctgg tcacgccgac ttcgtttgct tggtcgcgcg gacggcgtcg tcgagttcct
     4381 tgaaggtcgg acgatccgcg atgaacagca ccttgcgccc gaactcgacg gcaatcgccg
     4441 gcgcatagcc gttcatcgac gcaagcagca cagacttcac gcactggaat ggcttggctt
     4501 cggcctgtcc ttttgcagcc agcagatcgg ccagcggccc gaagaaacca tacgcgagca
     4561 ggatgccgag gaacgtgccg accagcgcgc ccgcgatcat ttcgccaagt atcgcgggcg
     4621 cggcgcccac tgagcccatg gtatgcacga cacccatcac ggccgcgaca attccgaacg
     4681 caggcaggcc gtcggccatc ttctgaattg cgccggatgc caacgaagtt tccgcgtgat
     4741 gcgtctcgag ttcttcgtcc atcaggtcct gcatctcgag cgcgttgatg ttgccgctcg
     4801 acatcatgcg caggtagtcg acgatgaatt ctagcagatg gtgatcgttc agcacgtgtt
     4861 cgtacttctt gaacgtcggg ctgttttgcg gtgcttccac gtcgacctca agcgccatca
     4921 tgccttcctt gcgcgccttc tgaagcagct cgtacagcag cgcgatgagc tgcacgtact
     4981 tttccttcga atagcctccc gccttgaacg cgctggggag aaccttgatg gtcttcttga
     5041 gcgtcgtaac cggattcgat acgacgaacg cacccattgc tgcgccgaag atgcacaaca
     5101 attcgaaggg ctggaacagt gcgagcagat ggccgcctac gcccagaaaa ctgccgatca
     5161 ccgacccaat gaccaagacc cagccaataa cgacaaacat cctctctctc cgcttgattt
     5221 ttgtggcttc gtttgaatga agctgtccta gaccttaacg gcaagcgaac cagcagattt
     5281 agggtagagg ggaggtatct tttctaccgg ggtttaagaa gcacggcaaa agttactttc
     5341 caaccgatgc ctatccatgt tgcgagcgct tgcctggcaa ggcccgggca cgcaaagcac
     5401 agccatcgtg gttcatcact ggccgccggc gatagatgtg atgttggcga ggcttt
//
LOCUS       DATGBK010001844         3501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_114666, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001844 DATGBK010000000
VERSION     DATGBK010001844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3501
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114666"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            282..908
                     /locus_tag="VKJ77_25960"
     CDS             282..908
                     /locus_tag="VKJ77_25960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48786.1"
                     /translation="MDSRKITKTDFLASRNSRETCRDGSDRQVARDCSLKVSDALPIT
                     RTPSKRIKRKIMRGLSLLAASAALAVLSGCSTTQSIVPGPQAKLSPMTTACFTAHGGR
                     SADMDAAVQRNLENHGVSVSIAPACDKTDMNVSYTDSWYWDIVMYLRSMDIRFYKAPS
                     GGLIASGHWKNSVLHQFPNADGVVQDLMDGMFVQAGEPGAIRTKAASN"
     gene            958..1263
                     /locus_tag="VKJ77_25965"
     CDS             958..1263
                     /locus_tag="VKJ77_25965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48787.1"
                     /translation="MTILFFLIQIVYSLLQAAAIFAGLEHWLGWPNWVCALVGGIFVF
                     GLRITPITVPLGIVGAHYGFQWSWPMSLLLFFAPLLLIIALAIFSRAAGGTKWLVRW"
     regulatory      1446..1542
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            1687..2904
                     /locus_tag="VKJ77_25970"
     CDS             1687..2904
                     /locus_tag="VKJ77_25970"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003811478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HMC48788.1"
                     /translation="MSRIAIIGAGITGVTTAYALSERDHDVTVFERHRYAAMETSFAN
                     GGQLSASNAEVWNSMATVLKGLRWMFTRDAPLLLNPAPSWHKYSWMGEFLRQIPNYRA
                     NTVETVRLAIAAREHLFGIAEREGIDFDLEQRGILHMYQQKKDFDTAAKVNLLLQMGG
                     LDRRAVTSDEMRALEPTLQGNFHGGFFTPSDSTGDIHKFTRGLAEACERRGVRFHYDT
                     QIADIEQRGDGPFAMRVLHGGNPGDEQQHGFDRIVVCAGVASREIASMLGDHVNIYPV
                     KGYSITVCLDDAASREGAPWVSLLDDSAKIVTSRLGADRFRVAGTAEINGFNRDIRSD
                     RIAPLVDWTRRYFPGVATSRVIPWAGLRPMLPSMLPKVGSGKRRGVFYNTGHGHLGWT
                     LSAATAHSIAERM"
     gene            complement(2920..>3501)
                     /locus_tag="VKJ77_25975"
     CDS             complement(2920..>3501)
                     /locus_tag="VKJ77_25975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019654134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48789.1"
                     /translation="RLPVLLTQFSRAFPNVRLDVSVGMSLDSQAMVAAHELDLAVVLC
                     VHGETDRDADGIVLRRTRFVWVAAESFEARVGMSLPFAFFPAPCVNRRVALEALDGLP
                     VDWHVAFTSSSQSGIRAAVMAGLAITPLTRDDLEPGIVVVDGQYGLPPLPEAEFRLLW
                     GKGEPTLAAQEFGRLVLDAPVERPLRASAANFA"
BASE COUNT          739 a         1054 c         1031 g          677 t
ORIGIN      
        1 gctattcaat ttgcgcgtct ggcaaatgcg ctagcggcgc cgggtaagag cccggtcgcg
       61 cacccgttat ccggccagcc cctcgacaat acatacgaca acggtaaatg cgccgataca
      121 ggcggctagc gtggctgctg ccttcgcgaa aggggtcatg cgggcctcca aaatcggtaa
      181 agggaagcgc attttatatt gaaatgaaag ctaaaagaaa taattgtatt aaatgaaaga
      241 tttggcagaa tcaagcgcta ggccgcgggg attttgttga ggtggattcg cgaaaaatca
      301 ctaagactga cttcttagcc agcagaaata gtcgcgaaac ttgccgcgat ggttccgatc
      361 gccaagttgc ccgcgactgc tcgctcaagg tctccgatgc gctgccgata acgcgtacac
      421 catcgaaaag aataaaaagg aaaatcatga gaggtctttc cctgctggct gcaagcgcgg
      481 ctttggccgt gctgtccggt tgttcgacca cgcaaagcat tgtccccgga ccgcaggcga
      541 agttatcgcc gatgacgaca gcttgtttca cggcgcacgg gggcaggtcg gcggacatgg
      601 atgccgcagt tcagcgaaat ctcgaaaacc acggcgtatc cgtttcgatc gctccggcgt
      661 gcgacaagac cgacatgaac gtctcctaca ccgacagctg gtattgggac atcgttatgt
      721 atctgcgatc gatggatatc cgcttctaca aggcaccgag tggcggcctg atcgcttcag
      781 gccactggaa aaactcagtg ttgcatcagt tcccgaatgc ggatggcgtc gttcaagact
      841 tgatggacgg gatgttcgtt caggcgggtg agcccggtgc gatacgaacc aaagcagcat
      901 cgaattagaa atggaccatt cgctcgcatc gcactagcag cgcatctggg gatcaacatg
      961 accatcctgt tttttcttat acagatcgtc tacagcttat tgcaggccgc agccatattc
     1021 gcgggcctcg aacattggct tggttggccg aactgggtgt gcgcgctagt cggcggcatt
     1081 ttcgtctttg ggcttcggat cacacccatc acggttccac tgggcatcgt cggagcacac
     1141 tatggcttcc aatggtcgtg gcccatgtcc ttgctgctat ttttcgctcc gctgcttctg
     1201 atcatcgctc tagcgatttt cagccgcgct gcggggggca ccaagtggct ggtgcgctgg
     1261 tagtagcgcc acgaaatgca ctagttggca tcagacaaac gtcgagaagc tgaggctgaa
     1321 tctttgcgac aggcggcgtt tcccactgcc gccaacgact atccgccagc atcccggccc
     1381 aagtcgattc aaaccaactc ccccttgcct atcttatttt tagacggtat cttggcgggg
     1441 ttctaatcgc tagcgcggga gagactgtca cggcaacatg gtgacggcgc cgacggagca
     1501 accgccccgg aaactctcag gcccaaggac cgcgcagcag gaacatctgg agagcggcgc
     1561 tttaatgcgc ccaccgacgg ggatgtcgtg cgtgcaacgc cacgactgaa actctcaggt
     1621 aaacggacag atggggcata gacgccggca acaccggcga tgcccaactt tcatctggac
     1681 cttgtcatgt cacgaatcgc catcattggc gccggtatta ccggcgtcac gactgcttac
     1741 gccctttctg aacgcgacca cgacgtcacc gttttcgagc gtcaccgata cgccgcaatg
     1801 gaaacatcgt tcgcaaacgg cggccagctt tccgccagca acgccgaggt ctggaacagc
     1861 atggccaccg tgctcaaggg cctgcgctgg atgttcacgc gcgacgcccc gctgctgctg
     1921 aaccccgcgc ccagttggca caagtattcc tggatgggcg aattcctgcg ccagatccct
     1981 aactaccgag ccaacaccgt cgagacagtg cgccttgcca ttgccgcgcg cgagcatctg
     2041 ttcgggattg ccgagcgtga agggatcgac ttcgacctcg aacagcgcgg cattctgcat
     2101 atgtaccagc agaagaagga cttcgatacc gctgcgaaag tgaacctgct tttgcagatg
     2161 ggcggccttg atcggcgagc ggtcacaagc gacgaaatgc gcgcgctcga gcccacgttg
     2221 caaggcaatt tccacggtgg atttttcacg ccatctgact ccaccggcga catccacaag
     2281 ttcacgcgcg gtctggccga agcctgcgag cggcgtggcg tgcgctttca ctacgacacg
     2341 cagatcgcgg atatcgagca gcgtggcgac gggccgttcg ccatgcgtgt gctgcacggc
     2401 ggcaacccgg gtgacgagca gcaacatggc ttcgaccgca tcgtggtgtg cgcgggcgtg
     2461 gcaagccggg agattgcatc gatgctcggc gaccacgtga atatctatcc ggtgaagggt
     2521 tattcgatca ccgtgtgcct ggatgacgct gcgagtcgcg agggtgcacc gtgggtcagc
     2581 ctgctcgacg acagcgcgaa gatcgtgaca agccggcttg gcgccgaccg ttttcgcgta
     2641 gcgggtacgg ctgaaatcaa cggctttaat cgcgatattc gctcggaccg gatcgcaccg
     2701 ctcgtcgact ggacgcgccg ctattttccg ggtgtcgcga catcgcgcgt gattccgtgg
     2761 gcaggtttgc ggccgatgct gccaagcatg ttgccgaagg tcgggagcgg caagcgtcgc
     2821 ggcgtgttct acaacacggg gcatgggcac ttggggtgga cgctatcggc tgccaccgcg
     2881 cacagcattg ccgagcgaat gtaggtccct gtaagcggct tacgcaaaat tggccgcact
     2941 cgctcgtagc ggacgctcga ccggtgcgtc gagcacgagg cggccgaact cctgcgcggc
     3001 cagcgtgggc tcacccttac cccagagcag cctgaattcc gcttccggca ggggcggcaa
     3061 accgtactgc ccatcgacaa ccacaatgcc cggctccagg tcatctcgtg tcagcggcgt
     3121 gatcgcgagc ccggccatca cggcagcgcg gatacccgac tgactcgacg atgtaaaggc
     3181 gacatgccag tccaccggca ggccatcgag cgcttcgagc gccactcgcc gattcacaca
     3241 cggcgctgga aaaaacgcga acggcagcga catccctacg cgtgcttcga acgattcggc
     3301 tgccacccag acgaaccgcg tgcgccgcaa cacgatgccg tcagcgtccc gatccgtttc
     3361 cccgtgaacg cacagcacca cggcaagatc cagttcgtgc gcggcgacca tcgcctgcga
     3421 gtcgaggctc atgcccacgc tcacgtccag ccgcacattc ggaaatgccc gcgaaaattg
     3481 cgtcagcaaa acggggagcc g
//
LOCUS       DATGBK010001845         2602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_91228, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001845 DATGBK010000000
VERSION     DATGBK010001845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2602
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91228"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VKJ77_25980"
     CDS             complement(<1..258)
                     /locus_tag="VKJ77_25980"
                     /inference="COORDINATES: protein motif:HMM:NF014609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HMC48790.1"
                     /translation="MFNSQPRLFLVDVFTEEAFWGNPVAVIGAGIPLAPEQMLRIARW
                     TGMPETVFVLPLDAHHDSEHAADYQVRIWSPSCELAFAGHPS"
     gene            complement(275..1327)
                     /locus_tag="VKJ77_25985"
     CDS             complement(275..1327)
                     /locus_tag="VKJ77_25985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010095534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine aldolase family protein"
                     /protein_id="HMC48791.1"
                     /translation="MSLIDLYSDTKTVPTEGMRAAMAAAKVGDEQMDEDPTTLALCER
                     VAMELGYDAAVFMPSGTMCNLVATLVHTRPGDELIADAQSHICTTEGAGAAAIAGVAI
                     NPVFTRDGIFTADECRGAIRAPSRTAPRSSMVSIEQTTNFSGGAVWPLDVLRGVRDAA
                     LDAGLRTHIDGARLFNACIATGQTPKTYAEGWNSAWVDFSKGLGCPFGAVLCGDRDFI
                     GEAWTWKYRLGGAMRQSGILAAAALYALDHHVARLAVDHANAALFIDLLSKTPYFAFD
                     TTSPTTNVILFKVQGLSVDTTAFVGRALERGVRLRALSDGRVRATTHLGVTRDEMLTA
                     ARILHDLAREFAANAA"
     gene            complement(1324..2397)
                     /locus_tag="VKJ77_25990"
     CDS             complement(1324..2397)
                     /locus_tag="VKJ77_25990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012745811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HMC48792.1"
                     /translation="MNIYPRFRAAACHVAPIYFDTPRTIDKACALIAEAAANGAELIA
                     FPEAFVSAFPVWSGVYPPVDVHEFFVSLASSAIRVPGPEVARLQDAARRHGVIVSIGI
                     NEGTPISPGCIWDTNLLIGEDGRILNRHRKLVPTYWEKLTWANGDGSGLRVVDTKAGR
                     IGALVCGENTNSLARFALLAQGENVHISSFSPRWPTHPPGEASYDLEAAIRLRAGAHA
                     FEGKIFNVVASGFLPPEAIDLIARDNARARQLLEESPKSVSMIFGPNGTVISDTLRDE
                     EGIVYADIDLKLCVVPKQFQDVVGYYNRFDVFQLKVNRRALAPAEFFDEHTGGEIDRS
                     YESWPPSLDEAWHAGMHDGANES"
BASE COUNT          531 a          788 c          770 g          513 t
ORIGIN      
        1 cgatggatga ccagcgaatg ccaattcgca tgagggcgac cagatcctta cctgatagtc
       61 cgccgcgtgc tcactgtcat ggtgcgcgtc caggggcaac acgaagactg tctccggcat
      121 gccggtccag cgcgcaatcc ggagcatctg ttcgggcgcc aacggaattc cggcaccaat
      181 caccgcgact ggattgcccc aaaaagcctc ttccgtaaaa acatcgacga gaaataggcg
      241 cggttgcgag ttgaacatag gtaatttcgt cgagctacgc agcattggcc gcgaattcgc
      301 gggctagatc atgcagaatg cgcgcggccg tcagcatctc gtcgcgtgtc acgccaagat
      361 gcgttgtcgc gcgcacacgg ccgtccgaaa gcgcccgaag acgcacgcct cgctccaatg
      421 cgcggcctac gaaggcggtt gtatcgacgg acaggccttg cactttaaac aggatcacgt
      481 tggtcgtagg gctcgtcgtg tcgaacgcaa aataaggcgt tttactgagc aaatcgatga
      541 acagcgccgc gtttgcgtga tcgacggcca ggcgcgctac gtgatggtca agtgcataaa
      601 gcgccgcggc ggccagtatt cccgactgcc gcattgcgcc gccgagccga tacttccacg
      661 tccatgcctc gccgatgaag tcacggtctc cgcataacac cgcgccaaac gggcatccca
      721 gtcccttgct gaagtcgacc cacgcgctat tccagccttc ggcatacgtc ttgggcgtct
      781 ggccggtggc aatgcaggcg ttaaagagcc gggcgccgtc gatgtgcgtg cgcaagccgg
      841 catcgagggc tgcatcgcgc acgccgcgga gcacatcgag cggccacact gcgccgccgc
      901 tgaagttcgt ggtttgctca atgctgacca ttgaggaacg aggcgctgtt cgagacggcg
      961 cgcggatcgc gccacggcat tcatccgccg tgaaaatgcc atcacgggta aagaccggat
     1021 tgatcgccac gcctgcgatc gccgcagcac ccgctccttc cgtggtgcag atgtgcgact
     1081 gggcgtcggc gatcagttca tcgccgggac gggtgtgcac gagcgttgca acaaggttgc
     1141 acatggtccc ggacggcatg aaaaccgccg catcgtaacc gagttccatc gccacgcgct
     1201 cgcataacgc aagggtggtg gggtcttcgt ccatctgctc gtcgccgacc ttcgccgcgg
     1261 ccattgctgc ccgcatgcct tcggtcggca cggtcttcgt gtcgctgtaa agatcgatca
     1321 ggctcatgat tcattggcac cgtcgtgcat gccggcgtgc catgcctcat cgagtgaagg
     1381 cggccatgat tcatacgagc gatcgatctc gccgccagtg tgctcatcga agaattcggc
     1441 cggcgcaagc gcgcggcgat tcacttttaa ctggaatacg tcgaaacgat tgtagtagcc
     1501 gaccacgtcc tggaactgtt taggcacgac gcaaagcttc agatcgatat ccgcatagac
     1561 gataccttct tcgtcccgca acgtatcgct gatgacggtc ccattgggtc caaagatcat
     1621 cgacacgctc ttgggggact cctcaagaag ttgccgggct cgtgcattat ctcgcgcgat
     1681 caggtctatg gcttcgggcg gcaggaatcc ggatgcgacg acattgaata tcttcccctc
     1741 gaacgcatgc gcgccggctc gcaagcggat ggccgcctcg agatcgtacg atgcctcgcc
     1801 aggaggatgg gtcggccagc gcggagagaa cgacgaaatg tgcacgtttt cgccttgcgc
     1861 gagtagcgcg aagcgcgcga gtgagttggt gttttcgccg cacaccagcg caccgatccg
     1921 tcctgccttc gtgtcgacga cccgcaggcc gctaccatcg ccgtttgccc atgtaagctt
     1981 ttcccaatac gttggcacca gcttgcgatg acgattcaga atgcgtccgt cctcgccgat
     2041 caggaggttg gtgtcccaga tacagccagg actgatcggc gtgccctcgt tgatgccaat
     2101 cgagacaatc acgccatgac ggcgggccgc atcttgcagg cgagccactt caggtcccgg
     2161 caccctgatt gcactcgacg cgaggctcac gaaaaactcg tgcacatcga ctggcgggta
     2221 caccccggac cagactggaa acgcggacac aaatgcttcc ggaaacgcga tcagttcggc
     2281 gccgttagcc gcagcttctg cgatcaatgc acacgctttg tcgatagtac ggggagtatc
     2341 gaagtaaata ggtgcaacgt ggcaggcggc tgcgcggaat ctggggtaga tgttcatggc
     2401 gtcggtaatg agctgggagt cgtcgccatt gtgaggaaag ggcacgcgtg cgtcgataca
     2461 cagcaccctg ccaaaacgct ataacagttt gcgtctggga cgacgatctc agtggacctc
     2521 tctttacgac tttgacctat atccgccgtt tcttcacccg ctatgtcgaa ctgcttccat
     2581 cgcgttatgc gcgggaggaa at
//
LOCUS       DATGBK010001846         2527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_68992, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001846 DATGBK010000000
VERSION     DATGBK010001846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68992"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1098)
                     /gene="tyrS"
                     /locus_tag="VKJ77_25995"
     CDS             complement(<1..1098)
                     /gene="tyrS"
                     /locus_tag="VKJ77_25995"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006751890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HMC48793.1"
                     /translation="MTTEPNDSPASAAKTLPLTDEVQAALAVAKRGCDELLIEAEFAQ
                     KLARSAASGKPLRIKLGLDPTAPDIHIGHTVVLNKMRQLQDLGHTVIFLIGDFTSLIG
                     DPSGRNATRPPLTREQIESNAKTYFEQAALVLDREKTEMRYNSEWSMPLGADGMIKLA
                     SRYTVARILEREDFTKRYQGGMPISIHELLYPLMQGYDSVALNADLELGGTDQKFNLL
                     VGRELQKQYGQEQQCILTMPLLEGLDGVEKMSKSKHNYIGISEKPTDMFGKLMSISDT
                     LMWRYFELLSFRSIEEIARFKSEAEGGRNPRDFKVLLGQEVVARFHSPADAERALEDF
                     NHRAKGGVPDEIPSVTLSGAPLAIGQLLKQAG"
     gene            1519..>2527
                     /locus_tag="VKJ77_26000"
     CDS             1519..>2527
                     /locus_tag="VKJ77_26000"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HMC48794.1"
                     /translation="MADGVYFGLMSGTSMDGVDGIAVQFSAGKPPVVLGEAHVGFSQG
                     LRDALFALQAAGDNELEREALAANALATRYAVCCHELASMSGYSSAKVRAIGVHGQTV
                     RHRPEKGYTRQINNPALLAEMTNIDIVADFRSRDVAAGGQGAPLVPAFHATIFGSKDE
                     TRVVCNLGGISNITILSANGSVHGFDCGPANALLDEWAHRHLKRPFDEGGHFAAQGQV
                     HRPLLNTLLNEPFFEQQPPKSTGRDLFNPAWLDAKLIGFEKISPEDVQATLVALTAIT
                     VAREIERHASDCRAVYVCGGGARNPVLMQAIQQALGESGVAGVPVMTTEALGVPPQQV
                     EA"
BASE COUNT          484 a          781 c          773 g          489 t
ORIGIN      
        1 tccggcttgc ttcaacagtt gcccgatggc gagtggtgcg ccgctgagcg tcaccgacgg
       61 aatctcgtcc ggcacgccgc ccttcgcacg atggttgaag tcttccagcg cccgttccgc
      121 gtcagccggc gaatggaaac gcgcgacgac ctcctgcccc agcagcacct tgaaatcgcg
      181 cgggttccga ccaccctcgg cttcgctttt gaaccgcgca atctcttcga tacttctaaa
      241 cgacagcaac tcgaagtagc gccacatgag cgtgtccgag atactcatca gcttgccgaa
      301 catgtcggta ggcttctcgc taatgccgat gtagttgtgc ttcgacttcg acatcttctc
      361 gacgccgtcc agcccttcca gcagcggcat ggtcaagatg cattgctgct cctggccgta
      421 ttgcttttgc aactcgcggc caaccagcag attgaacttc tggtccgtgc cgccgagttc
      481 gagatcggcg ttcagcgcaa ccgagtcgta accctgcatg agcggataca gcaactcatg
      541 aatcgagatg ggcatgccac cctgatagcg cttcgtgaaa tcctcgcgct caaggatccg
      601 cgcgaccgta tagcgcgacg cgagcttgat catgccgtcg gcgccgagcg gcatggacca
      661 ttcgctgttg tagcgcatct cggtcttctc acgatcaagc accagcgcgg cttgctcgaa
      721 ataggtcttc gcgttcgact cgatctgctc gcgcgtcaac ggcggccgcg tggcgttacg
      781 ccccgacgga tcaccgatca gcgaagtgaa gtcaccgatc aggaagatca ccgtatggcc
      841 gagatcctgc aactgacgca tcttgttcag gacaaccgta tggccaatat gaatatcagg
      901 cgcggtcggg tcgaggccaa gcttgatgcg cagcggcttg ccgctcgcgg cgctgcgagc
      961 gagcttctgt gcgaactcgg cttcgatcag cagctcgtca cagcctcgtt tggcgacggc
     1021 aagggcggcc tgcacttcgt cggtgagggg caaggttttc gcagccgaag ccggagagtc
     1081 gttcggttca gtggtcatgc ttgcaacttt ttcgggtgat ttattcgggg cgctaacaag
     1141 cgccaatcgg gcaaaagccg ctgtttccgg attcgtccac agtcgcgttc gaacacggaa
     1201 aatcgtgcgg cattcgcttg ttcaggcaac ggattttacg tgatgtcgtc tgccttcgcc
     1261 ccgttttccc cgcatgtggg ccgtgcgttg accgtttggc catgtttcga acgccccggc
     1321 tctggaaacg gaacgcggaa catggccgaa tggccagcgg cttaacgagt cgcgtcgatg
     1381 cgtggataat cggtccatcg tggccgcttt ggccgcaaga attgcatcaa tggccgcccg
     1441 actcgcggtc atcggtgaac ccgcatcgaa caggagagca acgtggcgcg acggaccgag
     1501 gcaacggaag caggcgacat ggcggacggc gtgtactttg ggctgatgtc gggcacgagc
     1561 atggatggcg tggacggcat tgccgtccag ttcagcgctg gcaagccgcc cgttgtactc
     1621 ggcgaggctc acgtggggtt ctcgcaaggc ctgcgcgacg cgcttttcgc cctccaggcc
     1681 gcgggcgaca acgaactgga acgggaagcc cttgcggcga acgcgctggc cacgcgctac
     1741 gccgtgtgtt gtcacgaact ggcgagcatg agcggctact cgtcggcgaa agtccgcgcg
     1801 atcggcgtac acgggcagac ggtgcggcat cggccagaaa agggctacac gcggcaaatc
     1861 aacaatcccg cgttgctcgc agaaatgacc aacatcgata tcgttgccga cttccgtagc
     1921 cgcgacgtcg cggccggcgg tcagggcgcg ccgctcgtcc cggcgtttca cgcgactatt
     1981 ttcggcagca aggacgagac gcgcgtggtt tgcaacctgg gcgggatcag caacatcacc
     2041 atcctctcgg ctaacggcag cgtccacggc ttcgattgcg gacccgcgaa cgcattgctg
     2101 gacgaatggg cgcaccggca tctgaaacgc cccttcgacg aaggcggtca tttcgccgca
     2161 cagggccagg tccaccggcc gctgctgaac acgctactca acgaaccgtt cttcgaacag
     2221 cagccgccta aaagcaccgg tcgagatctg ttcaaccctg cgtggctcga cgccaagctc
     2281 atcggttttg aaaagatatc gcccgaagat gtgcaggcca cgcttgtcgc actgaccgcc
     2341 atcaccgttg caagagaaat cgagcggcat gcttccgact gccgcgcagt ctatgtgtgc
     2401 ggcggcggcg cacgtaatcc ggtgctgatg caggcgatcc agcaggcgct tggggagagc
     2461 ggcgtggccg gcgttcccgt gatgaccact gaagcgctcg gcgtgccgcc acagcaggtg
     2521 gaagcat
//
LOCUS       DATGBK010001847         1533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_137789, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001847 DATGBK010000000
VERSION     DATGBK010001847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137789"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..502
                     /locus_tag="VKJ77_26005"
     CDS             <1..502
                     /locus_tag="VKJ77_26005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009972812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HMC48795.1"
                     /translation="DITGNTQFGSDFSLPDTSGKTRTLGDFKGKAVVLFFGYTHCPDV
                     CPTTLAELSQALQKLGDDGKRVQVLMVTVDPARDTAPLLGEYVSAFSPTFIGLRPADT
                     AELVKITKDFRVYYAQVPGKTAGEYTMDHTAASYVFDPQGHLRLFARDGQGVDTWVHD
                     LKLLLD"
     gene            complement(613..909)
                     /locus_tag="VKJ77_26010"
     CDS             complement(613..909)
                     /locus_tag="VKJ77_26010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020067021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HMC48796.1"
                     /translation="MYVIHLRYTGALAEIDDALEAHRLYLGRQFDAGAFIIAGPKVPR
                     DGGIILAASMDRDRLDAIIAEDPFSQQRLAHYDIIEFKATRLAPDLNLPQSPWL"
     gene            complement(978..>1533)
                     /locus_tag="VKJ77_26015"
     CDS             complement(978..>1533)
                     /locus_tag="VKJ77_26015"
                     /inference="COORDINATES: protein motif:HMM:NF024898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC48797.1"
                     /translation="TLDAMTPDERAQLLASMGCVQRLLGPNGATQRVRLRGPRPGDFG
                     WIVEREAQLAPGGMQAQREREIRTAMVVADYLTAPDPARNACWIAEQDGVSVGASLLI
                     GMSAGSARISALFMEPGVRRGGIARRLVNACVTFAAESGYDRIVCVTDLKPAPVGPLL
                     RPFGFEELSGQGDWVKRLEETCAN"
BASE COUNT          314 a          482 c          441 g          296 t
ORIGIN      
        1 cgacatcacc ggcaatacgc agttcggcag cgatttctcg ttgccggaca ccagcggtaa
       61 aacgcgcacc ctgggcgatt tcaaaggcaa ggccgtcgtg ctgttcttcg gctacacgca
      121 ttgcccggac gtttgcccga ccacgctcgc tgaactttcg caggcactgc aaaaactcgg
      181 cgacgacggc aaacgcgttc aagtgctgat ggtcaccgtt gatcccgcac gcgatacagc
      241 gccgttgctg ggtgaatatg tgtctgcgtt tagcccgacg ttcatcggcc tgcgtcctgc
      301 tgatacggcc gaactcgtca agatcacgaa ggattttcgc gtgtattacg cgcaggttcc
      361 gggcaagacc gccggcgaat acaccatgga tcacacggcc gcaagttatg tcttcgatcc
      421 acaagggcat ctcaggctgt tcgcacgcga tgggcagggc gtggatacgt gggtacacga
      481 tctgaagttg ctgctcgact gagcgtacgt ttgctacaag aacgccaagg ccgttccgac
      541 tcacgttgaa acggcctttt tcatggctgt ccgcacccca aacctttcag gaagctcgat
      601 cgaggaaaac gatcacaacc acggtgattg cggcaaattc agatccggtg caagccgcgt
      661 ggccttgaac tcgatgatgt cgtagtgcgc gagccgctgc tgcgagaacg ggtcttccgc
      721 aatgatcgcg tcaagccggt cacgatccat gctcgcagcc aggatgatgc cgccgtcgcg
      781 cggtactttg ggtcccgcga tgataaacgc gcccgcgtcg aactgccgtc cgagataaag
      841 gcgatgagct tcgagcgcgt cgtcgatttc agcgagcgcg ccggtgtagc gtagatggat
      901 gacgtacatg ggcgatttca accgatagag aacgggcctc aatcttaagc ccgcgcagtc
      961 gcctcggtgc gcaggcttta attggcgcag gtttcttcca ggcgcttaac ccaatcaccc
     1021 tgaccgctta gctcttcaaa accaaacggc cggagcagag gaccaaccgg agccggtttc
     1081 agatcggtca cgcagacgat gcggtcatat ccggactcgg cggcaaacgt cacgcacgca
     1141 ttgaccaatc ggcgggcgat accgcctcgc ctcacacccg gttccataaa caacgccgaa
     1201 atccgtgcgc tcccggctga catgcctatc agcaggctcg cgcctacgct aacgccgtcc
     1261 tgctcggcga tccagcacgc attgcgcgcc ggatcgggtg cagtcaggta atccgccacg
     1321 accatcgctg tacgaatctc tcgctcacgt tgtgcttgca ttccgcctgg ggcgagttgc
     1381 gcctcacgct cgacgatcca gccgaaatca cccggtcgcg gaccgcgcag ccgaacacgc
     1441 tgcgtggcgc cgttcggacc gagcaggcgc tggacgcaac ccatcgatgc aagcaattgc
     1501 gcgcgttcgt ccggcgtcat tgcgtccagc gtg
//
LOCUS       DATGBK010001848         1518 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_69003, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001848 DATGBK010000000
VERSION     DATGBK010001848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69003"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VKJ77_26020"
     CDS             complement(<1..600)
                     /locus_tag="VKJ77_26020"
                     /inference="COORDINATES: protein motif:HMM:TIGR01451.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48798.1"
                     /translation="MLPDGLRYLAGSARIDDVPLEEARGETALLAPSGADIGEVPPGV
                     ERRISIAFLVNATIENGAAIELQAALASHETGVIGSNVVRLAAKSNPILQNPATVASL
                     EATRSAEPGEEIRVIARVYNSGQSTARDVVVVLPVPDRTTYVAGSARVDGREITQRDE
                     RGDPFGFGTAPVAAGHLAAGATLVVEYRARIDSPLDNNTR"
     gene            810..>1518
                     /locus_tag="VKJ77_26025"
     CDS             810..>1518
                     /locus_tag="VKJ77_26025"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HMC48799.1"
                     /translation="MTIKDWFSKMTTLADLTDYRADAISRLGSESAFEVFARARQLSA
                     QGRTIVHMEIGEPDFDTPAHIKAAGIAAINENYSHYSPSAGIPELRDTIAAYASRFRG
                     VEPWGRENVVVSPGAKPVIWNTLSVLLDPGDELIFADPAYPAYASCAGYLGAKAIPVP
                     LLESKNWRLDLDELAAKITPKTKVVVVTSPHNPTGGVLTREDLGVIADLSHKHGFLVI
                     ADEIYSRNVYGSEFASIT"
BASE COUNT          298 a          497 c          449 g          274 t
ORIGIN      
        1 ccgcgtattg ttatcgagcg gtgaatcgat ccgcgcacgg tactcaacga caagcgtcgc
       61 gccggcggcg aggtgtccgg ccgcaaccgg cgccgtaccg aagccgaacg gatcgccgcg
      121 ctcgtcgcgc tgcgtaattt cgcgcccatc gacgcgggcg gagcccgcga catacgtggt
      181 gcggtcgggc acgggcagca cgacgacaac atcacgcgcg gttgactggc ccgaattata
      241 aacgcgcgcg atcacgcgaa tctcttcacc gggttcggcg ctacgcgtgg cttcaagtga
      301 ggcgacggtc gccggatttt gcaagatcgg attcgacttt gccgccagac gaacgacatt
      361 tgaaccaata acgccggttt catgtgacgc aagtgcggct tgcaattcaa tcgctgcgcc
      421 gttctcgatc gtcgcgttga ctaagaacgc aatcgagatg cgccgttcga cgcccggcgg
      481 gacttcgccg atgtcggcac cgctcggtgc gagcagcgcc gtttcgccgc gcgcttcttc
      541 aagcggcacg tcatcgatgc gcgcgctgcc ggctaaatac cgcaacccgt cgggcaacat
      601 gaagcgcgcg cgtaaacccg tcgccgcggc gccgccgaga ttgtaaaatg caaagacagc
      661 gcgtaccgtc attccaggtt cgaccgcgcg atccggtgaa acgacgaggg ttcgcaaccc
      721 ttcgggtaac gaaggtgatc ccggcgcgaa agcttccgtc agggtgcgca taaagcaagc
      781 ttcggttcgg cgccttttgg gtgccgacct tgactatcaa agattggttt tccaagatga
      841 caacgctcgc cgacttaact gactaccgcg ccgatgccat ttcgcgcctc ggcagcgaga
      901 gcgcgttcga ggttttcgcg cgtgcccgcc agctatcggc ccagggccga acgatcgttc
      961 acatggagat cggcgagccg gacttcgaca cgccggccca catcaaggct gccgggatcg
     1021 cagccatcaa cgaaaactac agccactact cgccgtcggc gggcattccc gaactgcgcg
     1081 acacgattgc cgcctacgcc tcacgcttcc gcggtgtcga gccatggggg cgcgagaacg
     1141 tcgtcgtctc accgggcgcg aagcctgtga tctggaacac gctgtcggtt ctgctcgatc
     1201 cgggcgacga gctgatcttc gccgatcccg cgtatcccgc gtacgcatcg tgcgccggct
     1261 atttgggcgc caaagcgatc ccggtgccgc tacttgagtc aaaaaactgg cgcctggacc
     1321 tcgacgaact cgccgcaaaa attacgccga aaaccaaagt cgttgttgtt acctcgccgc
     1381 acaacccaac cggcggcgtg ctgacgcgcg aagatctcgg cgttattgcc gacctctcgc
     1441 acaagcacgg cttcctcgtc atcgccgacg agatctacag ccgcaacgtc tacggttcgg
     1501 aatttgcctc aatcacgc
//
LOCUS       DATGBK010001849         1980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_160669, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001849 DATGBK010000000
VERSION     DATGBK010001849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160669"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            35..940
                     /locus_tag="VKJ77_26030"
     CDS             35..940
                     /locus_tag="VKJ77_26030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010091978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC48800.1"
                     /translation="MTSLKTPVSEFVTTRGTRLHVRRWGSPDAPTLFMLHGWMDISAS
                     FQFVVDALAGDWQVIAPDARGFGLSDWPVERGLSGHYWFQDYLADLDALLDHYAPASL
                     HGEPVNLVGHSMGANVVCLYAGVRPERVRRVVDLEGFGMPAAKADRSPTRLGQWLDDL
                     RAPPMLNTYATLDDVAQRLIRTNSRLPLAKARFLAQHWAKPDDTGRFHLLADPAHKMR
                     GPLLYRLDEVMAVWSKVRAKVLHVEALASPTLAMIAGDVPIDEFKQRFKAFSDWREEI
                     VDHAGHMLHHDQPERVAALIEAFCA"
     gene            1048..1878
                     /locus_tag="VKJ77_26035"
     CDS             1048..1878
                     /locus_tag="VKJ77_26035"
                     /EC_number="3.1.3.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097657 - 3',5'-nucleotide bisphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-nucleoside bisphosphate phosphatase"
                     /protein_id="HMC48801.1"
                     /translation="MNADLHCHSTVSDGQLAPAEVAARAHAGGVTLWALTDHDQLGGQ
                     REAREAAQALGMGYLGGVEISVTWAGRTVHIVGLNVDTENQGLIDGLAATRSGRQARG
                     EAIGEALAGVGIPGAYEGALHYVNDPAMISRTHFARYLVEKGYAESTSDVFSKYLGDG
                     KPGYVGHRWSKLADAMKWIKGAGGEAVIAHPGRYDFSQVEFAAFFDEFIQLGGRAIEV
                     VTGSHTPDQYREYAEVARRYGFLASRGSDFHAAGEGRIDLGQLPPLPADLKPVWECLV
                     "
BASE COUNT          350 a          595 c          643 g          392 t
ORIGIN      
        1 acatcgactc cattcaagct gcccccaatt cccgatgacc tctcttaaaa cgcccgtttc
       61 cgaattcgtc accacgcgtg gcacgcggct gcacgtgcgc cgatggggat cgcccgacgc
      121 gcccacgctg ttcatgctgc atggctggat ggatatttcg gcatcgtttc aatttgtcgt
      181 cgatgcactc gcaggcgact ggcaggtgat cgcgcccgat gcacgcggct tcgggctgtc
      241 ggactggccg gtcgagcggg gcttgagcgg ccattactgg ttccaggact atctggcgga
      301 cctggatgcg ctgctcgacc actacgcgcc cgcatcgctg catggggagc cggtgaacct
      361 ggtgggccac agcatgggcg cgaacgttgt ttgcctgtac gcgggcgtgc ggccggagcg
      421 agtgcggcgc gtggtcgatc tcgaggggtt cggcatgcca gccgccaagg cggaccgttc
      481 ccccactcgg ctcgggcaat ggctggacga tttgcgcgca ccgccaatgc tcaacacata
      541 cgccacgctc gatgacgtcg cccagcggct gatccgcacg aattcgcgcc tgccattggc
      601 gaaagcacgg tttttggccc agcactgggc taagcccgac gataccggcc gtttccatct
      661 gctcgccgat cccgcgcaca aaatgcgcgg gccgttgctg taccggctgg acgaggtgat
      721 ggctgtctgg tcaaaggtta gggcgaaagt cctgcacgtc gaagcgctgg cttcgcccac
      781 cctcgcgatg atcgccggcg atgttccaat cgacgaattc aagcagcgct tcaaggcttt
      841 cagcgattgg cgcgaggaga tcgtcgatca cgccgggcac atgcttcatc atgatcagcc
      901 cgaacgggtg gcggcgctga tcgaggcgtt ttgcgcttaa gcccagggcg ctggatcgtg
      961 taatcgaact aatcgaacga tcggtcagcg ctagaacccg tttgacgcgt tgcagtagaa
     1021 tgactggtaa ttcccagaca ttccatgatg aacgccgacc tgcactgcca ctccaccgtt
     1081 tctgacggcc aactcgctcc agccgaggtt gccgcgcgcg ctcacgcggg cggtgtgacg
     1141 ctgtgggcgc tcaccgacca cgatcagctt ggcggccagc gcgaggcgcg agaagctgcg
     1201 caagcgcttg gcatggggta tctgggcggg gtggagattt cggtgacgtg ggcggggcgg
     1261 acggtgcata tcgtcgggct gaacgtggat actgaaaacc aggggctgat cgatggcctg
     1321 gcagccacgc gcagcggccg ccaggcgcgc ggtgaagcca tcggcgaggc gctcgccggc
     1381 gtcggcatcc cgggcgccta tgagggcgcg ctgcactatg tgaatgatcc cgccatgatc
     1441 tcgcgcacgc atttcgcacg ctatctggtc gaaaagggct acgcggaatc aacctcggac
     1501 gtgttctcga aatatctcgg cgacggcaag ccgggttatg tcggccatcg ctggtccaaa
     1561 ctggccgacg ccatgaagtg gatcaagggg gcgggcggcg aagcggtcat tgcgcatccg
     1621 gggcgctatg atttctcgca ggtcgaattc gccgcgtttt tcgatgaatt catccagctc
     1681 ggtggtcgcg caattgaagt cgtgaccggt agccatacgc cggaccagta tcgcgaatat
     1741 gcggaagttg cccggcggta tggctttctc gcatcgcgcg gctcggattt ccatgcggca
     1801 ggcgaggggc gtatcgacct cgggcagttg ccgccactgc ctgccgatct caagcccgtg
     1861 tgggagtgcc tggtttaaaa gggggatcgc gccggttaac agtcaggcgg tgcgttgaac
     1921 cgcttttttg aacccgttaa aacgctgcgc acgatccttg cattcatcca attctgtttg
//
LOCUS       DATGBK010001850         1513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_299890, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001850 DATGBK010000000
VERSION     DATGBK010001850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299890"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1180
                     /locus_tag="VKJ77_26040"
     CDS             <1..1180
                     /locus_tag="VKJ77_26040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012401988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48802.1"
                     /translation="KREGKKHVRERLLQMGVDLDPNAKLKKLSIAQRQMVEICKALLR
                     NARVIALDEPTSSLSHRETEVLFKLVRELKADNRALIYISHRMDEIYELCNTCTIFRD
                     GRKIASHANLAEVPRDTLVQEMVGREISDIYDYKPRQLGEVRFAVKNVEGHALREPTS
                     FEVRRGEIVGFFGLVGAGRSELMHLVYGADHKKAGTIELDGKPIKVRSAGEAIKHCIV
                     MCPEDRKEEGIVAMASVSENINISCRRHYLRAGLFLDRKKEAETADRFIQLLKIKTPS
                     RRQKIRFLSGGNQQKTILSRWLAEPELKVVILDEPTRGIDVGAKHEIYNVIYQLAERG
                     CAIVMISSELPEVLGVSDRILVMRQGRIAGELPRGTATEKSVLNLALPVQSEPTAQAA
                     "
     gene            1209..>1513
                     /gene="araH"
                     /locus_tag="VKJ77_26045"
     CDS             1209..>1513
                     /gene="araH"
                     /locus_tag="VKJ77_26045"
                     /EC_number="7.5.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014898126.1"
                     /note="Part of the ABC transporter complex AraFGH involved
                     in the high affinity transport of arabinose; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose ABC transporter permease AraH"
                     /protein_id="HMC48803.1"
                     /translation="MEVRENITNTLVPAKNDKQRWWQQITEYSLVVIFVLMFITMSLT
                     VDHFFSIENMLGLALSISQIGMVACTMMFCLASRDFDLSVGSTVAFAGVLCAMVLNAT
                     "
BASE COUNT          338 a          410 c          471 g          294 t
ORIGIN      
        1 caagcgcgaa gggaaaaagc atgtgcgcga gcggctgctg caaatgggcg ttgatctcga
       61 ccctaacgcg aaactcaaga aactttccat cgcgcaacgg cagatggtcg aaatctgcaa
      121 ggcattgctg cgtaacgcac gcgtgattgc gctcgatgaa cccacgtcgt cgctgtcgca
      181 tcgcgagacg gaagtactgt tcaagctcgt gcgtgagttg aaagcggaca accgcgcgct
      241 gatctacatc tcgcaccgca tggacgagat ttacgagctg tgcaatacat gcacgatttt
      301 ccgtgatggc cgcaagatcg cgtcacacgc gaatctggcc gaggttccgc gcgatacgct
      361 cgtgcaggaa atggtcgggc gtgaaatttc ggatatctac gattacaagc cacgccagct
      421 cggcgaggtg cgcttcgccg tgaagaatgt ggaaggtcac gcgctgcgtg aaccgacgag
      481 tttcgaagtg cgccgcggcg agattgtcgg cttcttcggg ctggtgggcg cggggcgcag
      541 cgaactgatg cacctcgtct acggcgcgga ccacaagaag gccggcacga tcgagctgga
      601 tggcaagccg atcaaagtcc gcagcgcggg tgaagcgatc aagcactgca tcgtgatgtg
      661 tccagaggac cggaaagaag agggcatcgt ggccatggct tcggtgtcgg agaacatcaa
      721 tatctcgtgc cgccgccatt acttgcgcgc cggtctgttc ctggatcgca agaaagaagc
      781 cgaaaccgcc gaccgtttca tccagttgct gaagatcaag acgccgagcc gcagacagaa
      841 gattcgcttc ctctcgggtg gcaatcagca gaaaaccatt ctgtcgcgct ggctcgctga
      901 gccggaactg aaggttgtga tcctcgatga acccacgcgc ggcattgacg tgggcgcgaa
      961 gcatgagatc tacaacgtga tctatcaact ggccgaacgc ggctgcgcga tcgtgatgat
     1021 ttcgtccgag ttgcccgagg tgctgggcgt gtcggacagg atcctggtga tgcggcaagg
     1081 gcggatcgcg ggcgaattgc cgcgcggcac cgcgaccgaa aaatcagtgc tgaatcttgc
     1141 gctgcctgtg caatccgaac cgactgcgca ggcagcctga agcaaaaaaa gtggagatgg
     1201 aggacatcat ggaagtcagg gaaaacatta ccaacacgct ggtgccagcg aaaaacgaca
     1261 agcagcggtg gtggcaacag atcaccgaat acagtctcgt cgtgatcttc gtcttgatgt
     1321 tcatcacgat gtcgctcacg gtcgatcact tcttctcgat cgagaacatg ctcggcctgg
     1381 cgctgtcgat ttcgcagatc ggcatggtcg cttgcacgat gatgttctgc ctcgcatcgc
     1441 gggatttcga cttgtcggtg ggatctacgg tcgcgttcgc cggcgtgctc tgcgcgatgg
     1501 tgctgaacgc cac
//
LOCUS       DATGBK010001851         1781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_299895, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001851 DATGBK010000000
VERSION     DATGBK010001851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299895"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VKJ77_26050"
     CDS             <1..330
                     /locus_tag="VKJ77_26050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48804.1"
                     /translation="QKNWQSGGVEVVAYQSQEGVFEDLMAGRLDAALLGSVEADNGFL
                     KTPRGKGFGFVGGPLEMGDHGTGIGLRKDDAALKASIDSAIAGMRADGTYQKIAHKYF
                     DFDVYGN"
     gene            351..1472
                     /locus_tag="VKJ77_26055"
     CDS             351..1472
                     /locus_tag="VKJ77_26055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014972608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase/aspartoacylase
                     family protein"
                     /protein_id="HMC48805.1"
                     /translation="MHIQSTPLVSTSIGTRREFVSFHFGTPGTGEKIYIQASLHADEI
                     PAMLTAWRLKQRLIELEKAGRIRGEVILVPVANPIGLSQHVLGQFLGRFELNSGHNFN
                     RSFPLPAAAALVERIGSQWTQDADSNTRLLRRAVCDMLADVKPKNEFESLRREMLIMA
                     ADADVILDLHCSLEATMHLYTSPASWPSVEPLARYLGASGVLLCADSGGQSFDEIYAP
                     LWNDVRALLGEGTPLAAPNIALTVEHRGQRDVSYEFAEQDAEAIVDYLTYRGVIEGEA
                     RELPPLNHPATPLAGSEQFIAPASGVVVYRAQVGAHLKAGDPVFDIIDPITDEVTTLT
                     TKNDGIFYMRRAIRFVIAGAPMGRVTGAVPFRTGVLIGA"
     gene            complement(1505..>1781)
                     /locus_tag="VKJ77_26060"
     CDS             complement(1505..>1781)
                     /locus_tag="VKJ77_26060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014251642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48806.1"
                     /translation="KPKLAAATSFQGTAQQLMKAVGVTVAAGTIQVTMIVAPGAHAER
                     WQLASAFIVTALVVITSYPMFMRMPAEAGAGISASRASARGRAGEVK"
BASE COUNT          343 a          511 c          576 g          351 t
ORIGIN      
        1 cagaagaact ggcagtcggg tggcgtggaa gtggtcgcgt atcaaagcca ggagggcgta
       61 tttgaggacc tgatggccgg ccggctggac gcggcgctgc tcgggtcggt ggaagcggat
      121 aacggcttcc tgaagacccc gagaggcaag ggtttcggtt ttgtcggcgg cccgcttgag
      181 atgggtgacc atggcaccgg catcggtctg cgcaaggacg acgctgcgct gaaggcgagc
      241 attgatagcg cgattgccgg catgcgtgcc gacggcactt accaaaagat cgcccacaag
      301 tacttcgact tcgacgtcta cggcaactaa gagattttca ggagcattcg atgcacatcc
      361 aaagcacgcc gttggtttcc acgtccattg gcacgcgccg cgagttcgtc agctttcact
      421 tcggtacgcc gggtacgggc gagaagatct acatacaggc gtcgctgcac gcggacgaaa
      481 tacccgcgat gctgaccgcc tggcgcctga agcaacgtct gatcgaactg gagaaggcgg
      541 ggcggattcg cggcgaggtg atcctggtgc cggtcgccaa cccgatcgga ctctcgcagc
      601 atgtgctcgg acagttcctt ggacgcttcg agttgaatag cggccacaat ttcaatcgca
      661 gctttccgct gcctgccgcc gccgctttgg tcgagcgcat tggcagccag tggacgcagg
      721 acgctgacag caacacgcgc ttgttgcggc gggccgtatg cgacatgctc gctgacgtta
      781 agccgaagaa cgagttcgag tccttgcggc gcgagatgct gatcatggca gccgatgccg
      841 acgtgatcct cgacctgcat tgttcgcttg aggccaccat gcacttgtac acgagccctg
      901 cgagctggcc gtcggttgaa ccgctcgcgc gctatctggg cgcaagcggt gtattgctct
      961 gtgcggactc gggcggacag tcgttcgatg aaatttacgc gccgttgtgg aacgacgtcc
     1021 gtgcgctgct gggcgagggc acgccgcttg ccgcgcccaa cattgcactg acggtcgagc
     1081 atcgtggcca gcgcgacgtg tcgtatgaat tcgcggagca ggacgcggaa gctattgttg
     1141 attacctgac gtatcgcgga gtgatcgaag gtgaggcgcg cgagctgccg ccgctcaatc
     1201 atccggcgac gccgctggct ggcagcgagc agttcattgc gcccgcaagc ggtgtggtgg
     1261 tgtatcgcgc acaggttggt gcacatctga aagcgggtga cccggtcttc gatatcatcg
     1321 atccgatcac ggatgaagtg accacgctca ctacaaaaaa cgacggtatc ttttatatgc
     1381 gccgggcgat tcgctttgta atcgccggcg caccgatggg ccgcgtaacg ggtgctgtcc
     1441 ccttcagaac cggggtgttg atcggcgcct aaattgcgtc gctttatggc ctcgctttat
     1501 agcgtcattt gacctcgccc gcgcgaccgc gtgcggacgc gcgcgaagca gaaatcccgg
     1561 cccctgcttc agcgggcatc cgcatgaaca tcggataaga agtaataacg acaagtgcgg
     1621 tgacaataaa agccgaggcc aactgccacc gttcggcatg cgcgccgggg gctacgatca
     1681 tggtgacttg aatggtccct gccgcgaccg tcacgccaac cgccttcatc aattgctgag
     1741 cggtgccctg gaatgaggtg gcggcagcca gcttgggctt g
//
LOCUS       DATGBK010001852         1594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_69025, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001852 DATGBK010000000
VERSION     DATGBK010001852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69025"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..1338
                     /locus_tag="VKJ77_26065"
     CDS             97..1338
                     /locus_tag="VKJ77_26065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HMC48807.1"
                     /translation="MTSPVLTSTLTDCVDNHFDQEVQFLSALVQKPSDNPPGDCAGHA
                     EMAAQWLERIGFAVERHVVPAQDVTRAGMISATNLVVRHRFGAGPVIALNAHGDVVPP
                     GDGWTADPYGAEIRDGFMIGRGAAVSKSDFATYAFALKALIESGATLAGTVELHLTYD
                     EETGGLIGPEWLLKQGIVKPDYAICAGFSYSITTAHNGAIHLEVTVRGKSAHAARPDT
                     GHDALEAATAVLNALYAHRAALREIHSQTPGIDHPTLVVGLIKGGINTNVVPDKVSLR
                     LDRRVVPEENPQDVLKQLKALIMASVEGLPGIGVEIQEVLVTAPLRSLDGAERLSQAL
                     QRAALVTLQCDIPTEGVPLYTDARLYCEAGVPTVIYGAGPRTLLEANGHRADERVSLE
                     DLKVATKTVAIALADLLGPKP"
BASE COUNT          299 a          469 c          510 g          316 t
ORIGIN      
        1 cgctaagctg gcgccgctcg ccggcagcgg cgttacttgc gttactcttt accatgcagc
       61 caaccctcag ctagttacct ggatagatca tcgctcatga cctcacccgt tctcacctcg
      121 accctgaccg actgcgtcga caaccacttt gaccaggagg tccagtttct ttccgcgctc
      181 gtgcaaaaac cgtctgacaa tccgccgggc gattgcgcgg gccacgcgga gatggcggcg
      241 caatggttgg aaaggatcgg cttcgcggtc gagcgccacg tagtgccggc gcaagacgtc
      301 acgcgcgccg gcatgatcag cgcgacgaac ctggtggttc gccatcgctt tggcgcgggg
      361 ccggtgatcg cgctgaacgc tcacggcgac gtggtgcccc ccggcgatgg ctggaccgcc
      421 gatccatacg gcgcggagat tcgcgatggt ttcatgatcg ggcgcggggc ggcggtatcg
      481 aaatcggact ttgccaccta tgcgttcgcg ttgaaggcgt tgatcgagag tggtgcgacg
      541 cttgccggga cggtggagct gcacctgacc tatgacgaag aaactggcgg cctgatcgga
      601 ccggagtggt tgctgaagca gggcattgtg aagcctgact acgccatctg tgcaggcttt
      661 tcctattcga taacgaccgc gcacaatggc gcgatccacc tggaagtcac ggtgcggggc
      721 aagtcggcgc acgcggcgcg gcccgatacc gggcatgacg cgctggaggc cgctacggcg
      781 gtgctcaatg cgctgtacgc gcatcgggcg gcattacgcg agatccattc gcagacgccg
      841 ggcatcgacc atcctacgtt ggtggtgggg ctgatcaaag gtggcatcaa cacaaatgtg
      901 gtgcctgaca aggtgagttt gcggctcgac cggcgcgtag tgccggagga gaatccgcaa
      961 gacgtgctca agcaattgaa ggcgctgatc atggcgtcgg tggaaggctt gccgggcatt
     1021 ggcgtggaga tacaagaggt gctggttacg gcgccgttgc gctcgcttga cggtgcggag
     1081 cggttgtcac aagcgttgca acgagcggcc ctggttacgc tgcaatgcga cattcctacc
     1141 gaaggtgtgc cgctttatac cgatgcccgc ttgtattgcg aggcgggcgt gccgaccgtc
     1201 atttatggcg ccggtccgcg gacgctgctt gaggccaatg gacatcgggc cgacgagcgc
     1261 gtctcgcttg aagacttgaa ggtcgcgacg aaaacggtcg cgattgcgct tgcggatttg
     1321 cttggaccaa aaccctaagt gtttatatgc ttcgttcctt tgcggccttg caaaggaacg
     1381 aagcggtccc cggctttaaa agccaaccgc tgctccccgt agcaagcggc aaccgcaggc
     1441 cgcctcaatc tccccaatcg agtggtattc caggctcctc ccgcttgggc attcagcacg
     1501 tcttcaaaaa cacgaacata atccccggta tcgttatttg agcttcactg cggcgcccgg
     1561 tcgtccgtcg cgaagcgcga caggttgaac ctca
//
LOCUS       DATGBK010001853         2024 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322700, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001853 DATGBK010000000
VERSION     DATGBK010001853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322700"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /gene="tssG"
                     /locus_tag="VKJ77_26070"
     CDS             complement(<1..610)
                     /gene="tssG"
                     /locus_tag="VKJ77_26070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014724742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HMC48808.1"
                     /translation="MNFMRFCELIELAAPNLPSLGSTDSPANEPVRFRSRARLGFPNR
                     EIDAVEYDYDDRSKPPAIRTTFLGLYGVDARMPSYFIDEVAQNRDGAESLSGFLDMFH
                     HRIATQFYRTWRKYRFPAGFAKGGTDDVSRYLLSLVGLGIGHPAIEQTVGTRKLLSML
                     GLASQRTRTAEGLAGVLRHAVPDATITVTEFHPVWIQLNEFEP"
     gene            complement(694..1506)
                     /locus_tag="VKJ77_26075"
                     /pseudo
     CDS             complement(694..1506)
                     /locus_tag="VKJ77_26075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011515492.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
     gene            1553..2024
                     /locus_tag="VKJ77_26080"
                     /pseudo
     CDS             1553..2024
                     /locus_tag="VKJ77_26080"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
BASE COUNT          428 a          590 c          602 g          404 t
ORIGIN      
        1 ttggctcaaa ctcgtttaac tgaatccaaa ccggatggaa ttcggtaacc gtgattgttg
       61 cgtcaggcac ggcgtgtcgc agcacgccag cgagaccttc cgctgtgcgc gtgcgctgac
      121 tggcgagccc gagcattgag agaagcttgc gggtgccaac ggtctgctcg atcgccggat
      181 gcccgatccc caatccgaca aggctaagca ggtagcgcga gacgtcatcc gtaccgcctt
      241 ttgcgaagcc tgccggaaat cgatacttgc gccacgtccg ataaaactgt gtcgcgatcc
      301 ggtgatggaa catgtccaga aagcccgaca acgattcagc gccgtcgcgg ttctgcgcga
      361 cttcatcgat gaagtacgaa ggcatgcgcg catcgacgcc atagagcccc agaaacgtcg
      421 tgcggatagc cggtggtttc gatctgtcgt catagtcgta ctcgaccgcg tcgatttccc
      481 gattcgggaa tccgagtcga gcgcgcgagc gaaagcgtac cggctcattt gccggcgagt
      541 cagttgagcc aagcgagggc agattcggcg cagcgagttc aatcagctca caaaagcgca
      601 tgaagttcat gcgtgtcgcg ttttgcagca aagcgggcag cagcacgcgc tccacgtgtt
      661 cactaagcac tggaaactct cgatgaggcg cgttcaaaac ggtgcgcctt cagctttgtt
      721 atcgggccac gtaatgcgac gtccactcgg tagcgagacc acgaccagct tcgtatagat
      781 attcatcgtc gcgtacagcg cgaggaagcg gttgagcatt tcgccgaaca acgcgagatc
      841 gccatcgccc gcaaatttgt cgctgttaag cgtgacttcg atttccaccc cgcgcagcaa
      901 gccacccttg acgagctttt gcagcagccg atgtttgacg tcgataatcg catcgatacg
      961 ccgccggttc agctcgccat cggtccagtc gtagagcgcg aggctgccac gcaggatttc
     1021 tgcatcgagt agcgacagat agtttggcgc cagatgtgag agcacacgcc aatggaagcg
     1081 gtcaccagtg ggcggataca ccggcaaggt tggtgcggtc agattgcgca cagcccccac
     1141 atttgtaaag ccatcgcgca tgtgccggat gctggattca cgcagcccct tgcgtggcaa
     1201 catgccgttc gtgccggtca cggatatcga caaaacctct tgcggcagcg ttgtctggtg
     1261 ttcccacgcg tggccgccga gcacgatcca tgtgtcgaag cgaccggacg cgccacgctg
     1321 cagccgcgta tgaaaatatc gctcgggcat ctcatggcgc aacatgccgc cgcgatgccg
     1381 gaaggctgca aacggcgcat attcgaagcg cctgccggtg gacgcttcgc gtcccacgac
     1441 tgtatcaacc gaataggttt cgacaaactt gccgcgcttc tcagcggtgc gcacgcgata
     1501 tcaggaggct cacacggtct ctcagctcaa aggttcaccc ccgggctacg taggttatgg
     1561 acaaggtggc gtgctcacag aagctgtgcg acggcgccca tacagcgtga tcctgctcga
     1621 tgaagtggag aaagcacatc gcgatgtctt gaacgtcttc tatcaagtct tcgatcgcgg
     1681 tttcatgcgc gacggtgaag gacgcgtgat cgactttcgc aacacggtga ttgtgatgac
     1741 atcgaatctg ggcagcgacc tggtcatggc ggcacaagaa gcggtggtcg aagccggtgg
     1801 agaggtcacc accggcatgc tgatggaggc aatccgcccg tcgctgatcg agcacttcca
     1861 acccgcgttg ctcgctcgct ttcagacggt cgtgtaccgg ccgctctctt ccgacgcgat
     1921 gactacgatc gtgcgcatga agcttgcgaa ggtggcgcag cgcatcgagc ggaagttcaa
     1981 tgtgccgctt atctgcgacg acgcactgat cggcgaattg gtgc
//
LOCUS       DATGBK010001854         4318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_299917, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001854 DATGBK010000000
VERSION     DATGBK010001854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4318
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299917"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..712
                     /locus_tag="VKJ77_26085"
     CDS             <1..712
                     /locus_tag="VKJ77_26085"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S53 family peptidase"
                     /protein_id="HMC48809.1"
                     /translation="IHDDTNKPSVISISWGGPETNWTSQSQNAFDEVLQSAAALGVTV
                     CAASGDSGSSDGATDGQNHVDFPASSPYVLACGGTQLRASAKGISSEVVWNDGDQGGA
                     SGGGVSAVFALPVWQTGLSVTRVSDGKSALTKRGVPDVAGDASPVTGYDVIIGGTQTV
                     VGGTSAVAPLWAGLIARINAAAGKPVGFLNPKLYGAKTAGHDITEGNNGSFKATAGWD
                     ACTGLGSPDGVKVAAALK"
     gene            790..2463
                     /locus_tag="VKJ77_26090"
     CDS             790..2463
                     /locus_tag="VKJ77_26090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S1"
                     /protein_id="HMC48810.1"
                     /translation="MTNSSSAAKTSAKAPSSTPSGTPSTGSSSGSSTAGDQPYFDPTA
                     YGNGPDDSIDATQTDESAAITHHSAVIGGKKIDYTATAGHLVIVDPSSSKPDAKLFYV
                     AFTQDNQTEESRPVTFFYNGGPGSSSVFVLLGSFAPQRIKTSTPAFTPPAPYQMEDNP
                     DSLLDKSDLVFINPVGTGYSAAIAPNKNRDFWGVDQDANSLKQFIKRFLTKNNRWNSP
                     KFLYGESYGTARSCVLAYLLHEDGVDLNGITLQSSILDYTQSGNPVGALPTAAADAWF
                     HRKLGVHPRPTDLLTFSEEVAQFARTDYIAALRKFPQTDNDTVEKLSEYTGIDKATLI
                     AWSLDVASYDSRGNSLFLTTLLKSKGVALGSYDGRVTAISTGIAGKIDPNSGGNDPTM
                     TAVTGVYTAMWNEYLNEQLKFTSTSSFTDLNDQAFANWDFHHTDPTGAQKGVDSKGNV
                     ILYTAGDLAAVMALNIDLKVLSANGFYDFVTPFYQTVLDLQQMPLIDKTVRANLTAKF
                     YPSGHMIYLDGGSRTQLKADLAKMYQAATTDHEAVGRIRALQQRKIEPK"
     gene            2575..>4318
                     /gene="katE"
                     /locus_tag="VKJ77_26095"
     CDS             2575..>4318
                     /gene="katE"
                     /locus_tag="VKJ77_26095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013091784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="catalase HPII"
                     /protein_id="HMC48811.1"
                     /translation="MPTSKKNAGASAPSKNISAVARTPSQNNTNPKLDSLEQFRSDAT
                     NQALTTNQGVKVSDNQNTLKAGPRGPSLLEDFIMREKITHFDHERIPERIVHARGSAA
                     HGVFKPYKAHTDLTKAAFLLDPNKETPVYVRFSTVQGSRGSADTVRDVRGFAVKFYTE
                     EGNFDLVGNNMPVFFIQDAIKFPDFVHAVKPEPHNEMPQGGSAHDTFWDFVSLVPESA
                     HMVLWTMSDRAIPRSLRTMEGFGIHTFRLVNAEGKGRFVKFHWRPTIGAASLLWDEAQ
                     KLAGKDADFHRRDLWEAIDMGDYPEWELGVQIVEEDDEHSFDFDLLDPTKIIPEEIVP
                     ITMLGKLTLNRNPDNFFAETEQVAFCPGHIVPGIDFSNDPLLQGRLFSYTDTQISRLG
                     GPNFHEIPINRTIAPMHNNQRDAKHRMTVNRGQASYEPNSIDSGWPKETEPAAIGGGF
                     ETYPERVDAVKIRQRSESFADHYSQATLFWNSMTKPEKDHIVGAYSFELSKVERKFIR
                     ERQLGILANIDSELCARVAENLGLPAPKASASAEELGKSSLAESPALSIVAKTKPSVK
                     TRKVAILAAKGADVA"
BASE COUNT          957 a         1285 c         1301 g          775 t
ORIGIN      
        1 gatccacgac gataccaaca agccatcggt catctcgatc agttggggcg gaccggaaac
       61 taactggacg tcgcaatcgc aaaacgcctt cgatgaagtc ctgcaatccg ccgcggcact
      121 gggcgtcacc gtatgcgcgg cctccggcga cagcggttcc agcgacggcg ccacggacgg
      181 ccagaatcac gtcgacttcc cggcctccag cccgtacgtg ctcgcatgtg gcgggacgca
      241 actgcgggca tcggcgaaag ggatcagcag cgaagtggtg tggaacgacg gcgaccaggg
      301 cggcgcgagc ggtggcggcg tgagcgccgt gtttgcgttg ccggtctggc agaccggctt
      361 gagcgtcacg cgggtcagcg acggcaaatc ggcactgacc aagcgcggcg tgcccgatgt
      421 cgcaggcgac gcgtcgccgg tcacgggcta cgatgtgatt atcggcggga cgcagacggt
      481 agtgggcggc acgagcgcgg tcgcgccgct atgggcgggg ttaatcgccc ggatcaacgc
      541 ggcggcgggt aagccggtgg gcttcctcaa cccgaagctg tatggtgcga agaccgcggg
      601 ccacgacatc accgagggca acaacggcag cttcaaggcg acggcagggt gggatgcctg
      661 tacggggctg ggcagcccgg acggcgtgaa agtcgcggct gcgctgaagt agcggttgca
      721 ggtcaagatc agataagttg tgacgatggg ccaggcaaga actccaacaa caccggcaag
      781 ggagcaatca tgacgaactc cagttcagcg gcaaagacat ctgcaaaagc accttcaagc
      841 acgccctcag gcacgccttc aaccggatct tcatctgggt cttcaacagc gggggaccag
      901 ccttacttcg atcccaccgc ttacggcaac ggtcccgacg actccatcga cgcaacccag
      961 actgacgaaa gcgccgccat cacgcatcac tcggccgtga taggcggcaa gaagatcgac
     1021 tacacggcga cggccggtca tctcgtgatt gtcgacccga gcagttccaa gccggacgcg
     1081 aagctgttct acgtcgcgtt cacgcaggat aaccagactg aagaatcacg cccggtcacg
     1141 tttttctata acggcggacc gggatcgtcg tcagtattcg tgctgctcgg atctttcgct
     1201 ccgcaacgga tcaagacctc gacgcctgcg ttcacgccgc cagcgcccta tcagatggaa
     1261 gacaacccgg acagcttgct ggacaagagc gatctcgtgt tcatcaaccc ggtcggcacc
     1321 ggttattcgg cggccatcgc gccgaacaag aaccgcgact tctggggcgt tgaccaggac
     1381 gcgaattccc tcaagcaatt tatcaagcgc ttcctgacga aaaacaaccg ctggaattcg
     1441 ccgaagttcc tctacggcga gtcgtacggc accgcgcgca gctgcgtgct tgcgtaccta
     1501 ttgcacgagg acggcgtgga cctgaacggg atcacgctgc agtcgtcaat tctcgactac
     1561 acgcaatccg gcaatccggt gggcgcattg ccaacggccg ctgccgatgc atggtttcat
     1621 cgcaagctgg gtgtgcatcc acggcccacg gacctgctga cgttctccga ggaagtcgcg
     1681 cagttcgcgc gcacggatta catcgcggcg ctgcgtaaat tcccgcagac cgacaacgac
     1741 accgtggaga agctgtccga atacacgggc atcgacaaag ccacgctgat tgcgtggagt
     1801 ctcgacgtgg cttcctacga cagccgcggc aactcgctct ttctcaccac gctactgaag
     1861 tccaaaggcg tggcgcttgg ttcctacgat ggccgcgtga ccgctatttc aacgggtatc
     1921 gcgggcaaga tcgatccaaa ctccggcggc aacgacccca ccatgacggc ggtgaccggg
     1981 gtttacacgg cgatgtggaa cgagtacctg aacgagcagt tgaagttcac gtccacatcg
     2041 tcgttcacgg acctcaacga ccaggctttc gccaactggg acttccatca cacggacccg
     2101 acgggcgccc agaaaggtgt ggactcgaag ggcaacgtca ttctctatac ggccggtgat
     2161 ctggctgcgg tgatggcgct caatatcgac ttgaaggtgt tgtcggcgaa tggtttctac
     2221 gacttcgtga cgccgttcta ccagaccgtg ctggacctgc agcaaatgcc gctcatcgac
     2281 aaaaccgtgc gggcgaattt aacggcgaag ttctatccgt cgggccacat gatctatctc
     2341 gacggtggtt cgcgcacgca attgaaggcg gatctcgcga agatgtatca ggccgcgaca
     2401 accgatcacg aagccgtggg ccggattcgc gcactgcagc aacgcaagat tgaaccgaaa
     2461 tagcgggtta tcgccgaggg tttgaatcac ggcgtcggcg ggaacacaag ttgcgaacga
     2521 tcgaacgagc gcatgtcgaa tgcgccactt caattgcaca ctggagttcc cccgatgcct
     2581 acctcgaaga agaatgctgg cgcgtccgcg ccctcaaaaa acatcagcgc agttgcgcgg
     2641 acaccctcgc aaaacaacac caatccgaag ctcgacagtc ttgagcagtt tcgctcggac
     2701 gcgacgaatc aagccctgac gactaaccag ggcgtcaagg tttccgataa ccagaacacc
     2761 cttaaagccg gtcctcgcgg accctcgctg ctcgaagatt tcatcatgcg tgaaaaaatc
     2821 acgcacttcg atcacgagcg gattcccgag cgtatcgtcc atgcacgcgg gtcagccgcg
     2881 catggcgtat tcaagccata caaggcgcat acggacctga cgaaagcggc attcctgctg
     2941 gacccgaaca aggaaacgcc ggtgtacgta cgattctcga cggtgcaggg ctcacgcggt
     3001 tcggcggaca ccgtgcgcga tgtgcgtggt ttcgccgtca agttctacac ggaagaaggc
     3061 aacttcgacc tggtcggcaa caacatgccc gtcttcttca ttcaggatgc aatcaagttt
     3121 cccgacttcg ttcacgcagt caaaccggaa ccgcataacg aaatgccgca gggcggctca
     3181 gcccacgaca cattctggga cttcgtttcg ctcgtgccgg agtccgcgca tatggtgctg
     3241 tggaccatgt cggatcgcgc gatcccgcgc agcctgcgca ccatggaagg attcggtatc
     3301 catacgtttc gtctggtgaa tgcagagggc aagggccggt tcgtcaaatt ccactggcgt
     3361 ccgacaatcg gtgcggcttc gctcttgtgg gacgaagcgc agaagctggc cggcaaggac
     3421 gcggattttc atcggcggga tctgtgggaa gcgatcgaca tgggcgacta cccggaatgg
     3481 gagctgggcg tacagatcgt ggaggaggac gacgagcatt cgttcgactt cgatctgctc
     3541 gatccgacca agatcatccc tgaggaaatc gtgccgatca ccatgctcgg caaactcacg
     3601 ctgaaccgca atccggataa ctttttcgcc gaaacggaac aagtggcgtt ttgtcccggg
     3661 cacattgtgc cgggcatcga cttctcgaac gatccgctgc ttcaaggccg tttgttctcg
     3721 tacacggaca cgcagatcag ccggctgggc ggtccgaact ttcatgagat tccgatcaac
     3781 cgcaccatcg cgccgatgca caacaaccag cgcgacgcga aacaccggat gacggtgaat
     3841 cgcgggcagg cgtcatacga acccaattct atcgatagtg gctggccaaa ggaaaccgaa
     3901 ccggcggcaa ttggcggtgg gttcgagacc tatccggaac gcgtggatgc cgtaaagatc
     3961 cgccagcgca gcgagtcgtt tgccgatcat tattcgcagg ccacgctgtt ctggaatagc
     4021 atgacgaagc cagagaagga tcacatcgtg ggcgcgtatt cgttcgagtt gagcaaggtc
     4081 gagcgcaagt tcatccgcga acggcagctt ggaattttgg cgaatatcga cagcgaactg
     4141 tgtgcgcgtg ttgccgagaa tctcggcctg ccggcaccga aagcgagcgc gagcgcagag
     4201 gagttgggca aatcgtcgct ggctgagtcg ccggcgttga gcattgtcgc gaagaccaag
     4261 ccgtcggtga agacgcgcaa ggtcgccatt ctcgccgcga agggtgcgga tgttgcca
//
LOCUS       DATGBK010001855         1679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_69062, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001855 DATGBK010000000
VERSION     DATGBK010001855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1679
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69062"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..967)
                     /locus_tag="VKJ77_26100"
     CDS             complement(<1..967)
                     /locus_tag="VKJ77_26100"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48812.1"
                     /translation="MQRKNFLVAGAAAGVAASVPRFTMAAGPAATVKIGFLESFSGVF
                     SDLGAEHKIGAMLALADANKKGRVKYEFVFGDDTSKPATGVTEARRLVQQENVDVLFG
                     GTSSGVGLSLEPIANELETFYLCLGPQDSSITGSKASKLTYRFGPNVRMLLAPLAQRV
                     LSQGKKWYFIQADYALGKDAYAQLSQILKRAGGTEVGLDVLPLGTADFSAVLTKIRNS
                     DADVLVLANSGLDSANTLKQFVDFGLNKKMKAAGISLEDIYHKSLNLDAVQGATFPVL
                     WSPAVSPAAAKLAAHMRASYKETVSGRQYLGYMAAETLIERMNAAG"
     gene            complement(984..1385)
                     /locus_tag="VKJ77_26105"
     CDS             complement(984..1385)
                     /locus_tag="VKJ77_26105"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HMC48813.1"
                     /translation="MRFGETDAAGIVFYPTFFAWFDLGMQSLARDGDTPAHTPGGQNV
                     YPLPIVEAGATFLRPLMFDEPIEIVSTVAHVGASSIRLEHEIRRGDTVIATGFEVRVF
                     VANKDTGIEKAPLPDDLRARLSEARTTHHAS"
     gene            complement(1415..>1679)
                     /locus_tag="VKJ77_26110"
     CDS             complement(1415..>1679)
                     /locus_tag="VKJ77_26110"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HMC48814.1"
                     /translation="AAVRINRGASTKAVRETASAIYHVYEGSGTTQIGSESISWRQGD
                     TFCAPSWMPVTHRNSGDATAYLFRFDDRPTLRALGWYRTDDQG"
BASE COUNT          317 a          489 c          531 g          342 t
ORIGIN      
        1 tacccgcagc attcatgcgc tcgatgagcg tttcagccgc catgtagccg aggtattgac
       61 gaccggagac cgtctctttg tacgatgcac gcatgtgcgc cgcgagtttt gctgcagccg
      121 gagagaccgc cggcgaccac agaaccggaa acgtcgcgcc ctgtacggcg tcgaggttga
      181 gcgatttgtg atagatgtct tcgagcgaaa tgccggccgc tttcatcttc ttgttgaggc
      241 caaaatcgac gaactgctta agtgtgttag ccgaatcaag tccgctgttt gcaagcacga
      301 gcacatcggc atcgctgttt cgaattttgg taagcacggc tgaaaagtcg gcggtgccta
      361 gcgggagaac gtcgaggccg acttcggtac cgcccgcgcg tttgagaatc tgcgaaagct
      421 gcgcgtaggc atctttgccg agcgcgtagt cagcctggat gaagtaccac ttcttgcctt
      481 gtgaaagcac gcgctgcgcg agtggcgcga gtaacatgcg aacgttcggg ccgaagcggt
      541 aggtgagctt cgaggctttg ctgccggtaa ttgacgagtc ttgcgggccc aagcacagat
      601 agaacgtttc gagttcgttt gcgatcggct cgaggctcag tccgacgccc gatgatgttc
      661 cgccaaagag aacgtcgacg ttctcttgct gcacgaggcg gcgcgcttcg gtgacgccgg
      721 ttgccggttt ggacgtatcg tcaccgaaga cgaactcgta ttttacgcga ccctttttgt
      781 tggcgtcggc gagcgcgagc atcgcaccga tcttgtgctc ggcgcccaga tccgaaaaga
      841 cgccgctgaa cgattcaagg aagccgattt tgacggttgc ggcggggccg gcggccatcg
      901 tgaaacgcgg caccgaagcc gcaactccgg cggcagcgcc ggcaacaaga aagttctttc
      961 tttgcattcg tacgaactcc aagctaggat gcgtgatggg tcgtccgagc ttcggacagc
     1021 cgggcgcgaa ggtcgtccgg aagcggcgcc ttctcgatgc cggtgtcctt attcgcgacg
     1081 aacacgcgga cctcgaaccc ggtcgcgatc accgtatccc cgcgacgtat ttcatgttcg
     1141 agccgaatgg acgacgcgcc gacgtgcgcg acggtggaca cgatctcgat tggttcgtcg
     1201 aacatgagcg gtcgcaggaa tgtcgcgccg gcctcgacga tcggcaacgg atagacgttt
     1261 tggccgccgg gggtatgcgc gggtgtgtcg ccgtcgcgcg cgagcgactg cattcccaaa
     1321 tcgaaccacg cgaagaatgt cgggtagaag acgatgcccg ctgcgtcggt ctcgccgaag
     1381 cgcacgcgcg tcgacgtgat cgcgcagcgt cgggtcaccc ctggtcgtcc gtgcgatacc
     1441 agcctaaagc gcgcagtgtc ggccggtcgt caaaccggaa cagatacgcg gttgcatcgc
     1501 cggaattgcg gtgcgttacc ggcatccagc tcggcgcgca aaacgtgtcg ccttgccgcc
     1561 atgaaatcga ctcgcttccg atctgcgtcg tcccgctgcc ttcgtagaca tgatagatcg
     1621 cgctggctgt ttcgcgcacc gcttttgttg acgcaccacg gttgatgcgt acggcggcc
//
LOCUS       DATGBK010001856         1777 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_346143, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001856 DATGBK010000000
VERSION     DATGBK010001856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346143"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            275..559
                     /locus_tag="VKJ77_26115"
     CDS             275..559
                     /locus_tag="VKJ77_26115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HMC48815.1"
                     /translation="MKQPNDVFNDFQAKMSELLKNSPAKDIERNMKAMLSQGFSKLDL
                     VTREEFDTQTQVLVRTRARLEELEQRVAQLEAKLGGGPTSSSSSSSGVQD"
     gene            663..>1777
                     /locus_tag="VKJ77_26120"
     CDS             663..>1777
                     /locus_tag="VKJ77_26120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018436768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HMC48816.1"
                     /translation="MSLAVVRSRAPAPGRAPEVTVEVHLANGLPSFSIVGLPDLEVRE
                     SRERVRAALQNCSFDFPVRRITVNLAPADLPKESGRFDLPIALGILAASGQIPADALL
                     HREFAGELSLTGALRPMRGAFAMACGAARQYARAGSALDGVSIRDTDPRMPEIYLPLG
                     SAAEAALVPGIDVFGAADLPALCAHLSGSADGRLTPIRSAAPDSPLRRRAPLPDLVDV
                     IGHPGARRALEVAAAGGHHLLMVGPPGAGKSMLAARLPSLLPPMTDDEALSSAAILSA
                     SMLGFSPSQWRQRPFRAPHHSSSSVALVGGRNPPQPGEITLAHLGVLFLDELPEFDRK
                     VLETLREPLEAGRITISRAAHQADFPAACQLVAAMNP"
BASE COUNT          307 a          546 c          566 g          358 t
ORIGIN      
        1 cacgatcggt cgaaggggct caaatagcat gtgtgcgtgg gcgtagaccg gatggccagc
       61 atcgcctgcg ttcgctggcg cgcaccgtgg atcgttgcta gagtgctcgc aaggtccagg
      121 caagcaggtg tgttccgaag cgcagcatcg tgtcgcgtgg aggtgccgcg gttctcgtgg
      181 ttcgccagag tacgcaccaa aatggatcat ccggtttgcc ggagcactga gctaacaatg
      241 aatgcacttt tatggtgcgc aaggggaaat tcgtatgaaa caaccgaacg atgtattcaa
      301 tgacttccag gccaagatga gcgaattgct taagaattcg ccggcaaagg acattgaacg
      361 gaacatgaaa gccatgctgt cccagggttt ttcgaagctg gacctggtga cgcgtgaaga
      421 attcgatacc cagacgcaag tgctcgtgcg tacgcgcgcc cggctcgaag aactggaaca
      481 gcgcgtcgcg caactggaag cgaagctggg cggcggaccg acgtccagtt cgtcgagttc
      541 gtctggtgtc caggactgaa gtgcagatgg tctaaagcgt gtcatcggct aagcgagccg
      601 tgatgttggg tcattaagcc gttgcctcgt attgccgaga caacggcagc ggggaaaaaa
      661 tcatgtcgct tgccgtggtg cgcagccgcg cgcccgcccc tgggcgcgcg cccgaggtga
      721 ccgtcgaggt tcatctcgcc aatggattac cttcgttttc aatcgtcggc ttgcccgatc
      781 tcgaagttcg tgaaagccgc gagcgggtgc gcgcagcact ccagaattgc agtttcgatt
      841 tccccgttcg ccggatcacc gtcaatctcg ctcccgccga tctgccgaag gaatcgggcc
      901 gcttcgacct gccgatcgca ttgggcattc tcgcggcgag cggccagatt ccggcagacg
      961 cgctgctgca tcgcgagttc gccggggagt tgtcgctgac tggtgcgctg cgccccatgc
     1021 gcggcgcgtt cgccatggcc tgcggtgcgg cacggcaata tgcgcgcgcc gggtcggcgc
     1081 ttgatggcgt ctccattcgc gatactgatc cccgcatgcc cgaaatctac ctgcctctgg
     1141 ggagtgcggc ggaagcggcg ctggtaccgg gtatcgatgt attcggggca gccgatctgc
     1201 ccgctttgtg tgcccacctc agtggttcgg ccgacggtcg tcttacgcct atccgcagcg
     1261 cggcgcccga ttccccgctg cgccggcgcg cgccgttgcc cgatctcgtc gatgtgatcg
     1321 gccatcccgg cgcacgccgc gcgctcgagg ttgcggcagc gggtgggcat catctgctga
     1381 tggtcgggcc gcccggcgcg ggcaaatcaa tgctcgccgc ccggctaccc agccttcttc
     1441 ctcccatgac cgatgacgaa gcgttgtcgt cggcggccat tctctccgcc agcatgcttg
     1501 gattttcgcc ctcgcaatgg cgccagcgac cgtttcgcgc gccgcatcat tcgtcgagtt
     1561 ccgttgcgct ggtaggtggg cgcaatccgc cgcaacccgg cgagatcacg ctggcgcatc
     1621 tcggcgtgct gttcctcgac gaactgcctg aattcgaccg gaaagtgctc gaaacgctac
     1681 gcgaaccgtt ggaggccggc cgcatcacaa tttcgcgcgc cgcgcatcag gccgattttc
     1741 cggcggcgtg tcaattggtc gcagccatga atccctg
//
LOCUS       DATGBK010001857         1852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_69086, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001857 DATGBK010000000
VERSION     DATGBK010001857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69086"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1701
                     /locus_tag="VKJ77_26125"
     CDS             112..1701
                     /locus_tag="VKJ77_26125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012217342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HMC48817.1"
                     /translation="MADVTTAPAAPAPEAERASAADWLAVAAGSLGALMATLDISITN
                     SALPQIQGEIGATGTEGTWISTGYLMSEIVMIPLAAWLTRVFGLRNFLLANATLFIAF
                     SMMCGWSHSLPMMIAGRIGQGFAGGAMIPTAQTIIRTRLPRSQMPVGMTMFGLIVLLG
                     PLLGPVLGGWLAENISWSWCFFINLPVCIALITLLIVGLPADRPQWGTFFKADWVGIV
                     GLTIGLSSLTVVLEEGQRERWFESSMIISLTCVSLAGMVLIAISQLTAQRPIMRLNLM
                     RNPRYASVIVIVFAVGAGLYGVSYLLPQFLGIVSGYNAQQSGAIMLISGVPAFLIMPI
                     LPRILGKLDFRMLVIGGLLLFALSCMLDIGLTAQSVGHDFFWSQLIRGFAQILALMPL
                     NQASMAAVSREDSGDAAGLYNMARNLGGSVGLAIIGTVIDRRTTFHTAMIRESLTANS
                     LVGQERLTSNAASWFAHTGDMAYSKMRALGQIAAQIHMQATVITYSETFYLLGLALLA
                     CVPLALLLKTPRGPVSPSSGH"
BASE COUNT          291 a          592 c          571 g          398 t
ORIGIN      
        1 agacaggacc ggagacacgc agcgtgttgc tgcccggctt gtcggtgacg gccgatgtcg
       61 atacccgctc atcacgcgaa ggcgaccagc gcatcaaagc cgagaacgat catggctgat
      121 gtgaccacgg cacctgcggc gcccgcgccg gaggcggagc gcgctagcgc ggcggactgg
      181 ctggcggttg cggccggctc gctgggcgcg ctgatggcca cgctggatat ctctatcacc
      241 aactcggcct tgccgcagat tcagggcgag attggcgcga ccggcaccga aggcacatgg
      301 atctcgaccg gctacctgat gtccgaaatc gtgatgatcc cgctcgcggc atggctcacg
      361 cgcgtgttcg gcctgcgtaa cttcctgctc gccaacgcca cgctgttcat cgcgttctcc
      421 atgatgtgcg gatggtcgca tagcctgccc atgatgatcg ccgggcgcat tggccagggc
      481 ttcgcgggcg gggcgatgat cccgacggcg cagaccatca tacggacccg gttaccgcgt
      541 tcacagatgc ccgtcggcat gacgatgttc ggcttgattg tgttgctcgg tccgctgctg
      601 gggccggtgc tcggtggatg gctggcggag aacatcagct ggagctggtg cttctttatc
      661 aacctgcctg tatgtattgc gctgatcacc ttgctgatcg tcgggttgcc ggcggaccgc
      721 ccgcagtggg gcacgttttt caaggcggac tgggtcggca ttgtcggcct cacgatcggc
      781 ctgagctcgt tgaccgtcgt gctcgaagaa ggccagcgcg aacgctggtt cgagtccagc
      841 atgatcatct cgctgacctg cgtgtcgctg gcgggtatgg tgctgatcgc catttcgcaa
      901 ctcaccgcgc agcggccgat catgcgtctg aacctgatgc gcaacccgcg ttatgcaagc
      961 gtcatcgtca ttgtatttgc ggtcggtgcg gggctgtatg gcgtgtcata cctgctgccg
     1021 cagttcctcg gcatagtgtc cggttataac gcgcagcagt cgggcgccat catgctgata
     1081 tcgggcgtgc cggcgttcct gatcatgccc atcctgccac gcattctcgg caagctcgac
     1141 tttcgcatgc tcgtgatcgg tggactgttg ttgtttgcgt tgagttgcat gctcgatatc
     1201 ggcctgacag cgcagagcgt cggccacgac ttcttctggt cccagctgat acgcggcttc
     1261 gcgcaaatcc tcgcgctgat gccgttgaac caggcttcaa tggcagcggt ctcgcgtgaa
     1321 gattcaggcg atgcagccgg tctctacaac atggcccgca accttggcgg ctcggttggg
     1381 cttgcgatca tcgggaccgt gatcgaccgg cgcacaacct tccataccgc gatgatccgc
     1441 gaatcgttga ctgccaactc gctggtgggc caggagcgcc tgacgtcgaa cgccgcgagc
     1501 tggttcgcgc acaccggcga catggcctac tccaaaatgc gtgcgctcgg ccagatagcg
     1561 gcgcagatcc atatgcaggc gaccgtcatc acgtactctg agacgttcta tctgctcggt
     1621 ctcgcgctgc ttgcctgcgt gccgctcgcg ctcctcctga agactccgcg cggccccgtt
     1681 tcgccgtcct ccggccattg acggcaaaga cactatccac gatgttccct cgccctacta
     1741 cccccctttt actaacgttg ctggcgtctg tttgtgccat ctcggcctgc accgtcggtc
     1801 ccgattatgc cggtgcccct caggtcgcgc ctgacgcggc gcacgcctcc ta
//
LOCUS       DATGBK010001858         2141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322771, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001858 DATGBK010000000
VERSION     DATGBK010001858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322771"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VKJ77_26130"
     CDS             <1..200
                     /locus_tag="VKJ77_26130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013089446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP binding domain-containing protein"
                     /protein_id="HMC48818.1"
                     /translation="DALIIVTEWKVFKSPDFDGMKRRLKTPLIFDGRNLYEPETMSEI
                     GVEYHAIGRGVRQSVKAPATA"
     gene            319..774
                     /locus_tag="VKJ77_26135"
     CDS             319..774
                     /locus_tag="VKJ77_26135"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010110222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HMC48819.1"
                     /translation="MFRRVLIVCHANVCRSPAAEMLFRAHAGKLAGQDARRSIEFRSA
                     GLFAKEGRDIDPTMYRLLAERDVDPSGHSARRFDESMACAAELILVPERQQIAAIEKM
                     APHTRGKVHLLGKWEDSEVADPHGGHEVAYRESFALIERLVQGWLKKIW"
     gene            768..1943
                     /locus_tag="VKJ77_26140"
     CDS             768..1943
                     /locus_tag="VKJ77_26140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009978106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HMC48820.1"
                     /translation="MVNRSLVLSVSVVFSLTTFLSACGALPGYNLNTSRLNDTDPTPT
                     ATYPVHLITADVIMQQNRPGPAALLPPSRFADPAQYVYRVAPQDVLGITIWDHPELTT
                     QQGQTLSAGGNTTQTVAGALAQPYTTALPGQADPFGQTVSPDGTIYFPFVGKIRVAGK
                     TAGEIRDQLSAGLSPYLKKPQVDVRVLAYRSQKVSVTGEVKTPGPLAMSDVPITLVDA
                     ITRSGGTNSDADLQRVRLTRNGKLYELDADGVLDRGEVSQNVMLQAGDIVNVPDRTDS
                     RVFVMGEVKTPVPVSMMKGRLTIADALTQAGGILDTDANARQVYVVRGAREKPTSPDI
                     YRLDLTQPDSLLLSTQFQLHPLDVVYVGTAGAVQFNRLVNQVLPTLQTIFYLKQLTR"
BASE COUNT          432 a          650 c          657 g          402 t
ORIGIN      
        1 ccgacgcatt gatcatcgtg acggagtgga aggtgttcaa gagcccggac ttcgacggca
       61 tgaaacgccg cctgaagacc ccgctgattt ttgacggccg caatctctac gagccggaaa
      121 ccatgagcga gatcggcgtg gagtatcacg cgatcggacg gggtgtacgg caatcggtga
      181 aggcgccggc cacggcttga gccaactggc acgcccagct gttcaataaa aacgaaatcg
      241 acacacccac gcgctgcgag cgcggcatcg gttgagggac ccgatgccgc gactgcgccg
      301 ttttaacgga tacaacccat gtttcgacgc gtcttgattg tctgccatgc gaacgtctgc
      361 cgaagccctg ccgcggaaat gctgttccgc gcgcatgccg gcaagctagc gggtcaagac
      421 gcaagacgct cgatcgaatt ccgctctgcc ggcctctttg ccaaagaagg ccgtgacatc
      481 gatccaacga tgtaccgctt gctggcggag cgcgatgtcg atccatcggg acactctgcg
      541 cgccggttcg acgagtccat ggcatgcgca gccgagttga ttctcgtgcc cgaaaggcag
      601 cagattgccg cgattgaaaa gatggcgccg cacacccgcg gcaaagtgca tctgcttggc
      661 aagtgggaag actctgaagt ggccgatcca cacggcggcc acgaagttgc ctatcgcgag
      721 agcttcgcgc taattgaacg tctggtccag ggatggctga aaaaaatatg gtgaaccggt
      781 ctttagtttt atctgtttcc gtggtctttt cgctgacgac ctttttgtcg gcttgtggcg
      841 ccttgccggg ttacaacctg aacacgtcgc gcctgaacga tacggacccc acgccgaccg
      901 cgacctatcc cgtgcatctg atcacggcgg acgtgatcat gcagcaaaac cggccgggcc
      961 cggcagcgct gctgccgccc tcgcgttttg cggatccggc gcaatacgtg tatcgcgtgg
     1021 cgccgcagga cgttctcggc atcacgatct gggatcaccc ggagctcacc acgcagcagg
     1081 gacagacctt gtcagcgggt ggcaacacca cgcaaacggt cgctggcgcg ctcgcgcagc
     1141 cgtacaccac cgcgctgccc ggccaggccg atccgttcgg gcagacggtc tctcctgatg
     1201 gcacgatcta ctttccgttt gtcggcaaga tacgcgtcgc gggcaagact gcgggcgaga
     1261 ttcgcgatca actctcagcg ggattgtcgc cgtacctgaa gaagccgcaa gtcgacgtac
     1321 gcgtgcttgc ttaccgtagc cagaaggttt cggtgacggg cgaagtgaag acaccgggac
     1381 cactcgcgat gagcgacgtg ccgatcacgc tggtcgatgc aatcacgcgc tccggtggta
     1441 ctaactccga cgccgacctg caacgcgtgc gcctcacgcg caacggcaag ctctacgagc
     1501 tcgacgccga cggcgtgctt gaccgtggcg aggtttcgca gaacgtgatg ctgcaggcgg
     1561 gcgatattgt gaacgtcccg gaccgcaccg acagccgcgt gttcgtgatg ggcgaagtca
     1621 agacaccggt gcctgtctcc atgatgaagg gccgcctgac gattgccgat gcgctgacgc
     1681 aagccggcgg catcctggac acggacgcga atgcacgaca ggtctacgtg gtgcgcggcg
     1741 cgcgcgagaa gcctacttcg ccggatatct acaggctgga cctgacgcag ccggattcgc
     1801 tgttgctgtc gacgcaattc cagcttcacc cgcttgacgt ggtgtacgtg ggcacagccg
     1861 gtgcagtgca gttcaaccgt ctggtcaacc aggtcctgcc gaccttgcag acaatcttct
     1921 acctgaagca gctgacgcga tgagcgcttt ccataacgtc gaatgcatcg aaccaaccgg
     1981 ggttgaatcg tgagcacgcc agcacattcc tatcagggta agaccgaaga agaggacgtc
     2041 gtcctagggc agttgttgca agtgatcctt gacgacatct ggtggatgat cgggaccgcg
     2101 gcgttcatca ttctcgccgc ggcggcgtac tgctacgtcg c
//
LOCUS       DATGBK010001859         2173 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_69148, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001859 DATGBK010000000
VERSION     DATGBK010001859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69148"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..760
                     /gene="metF"
                     /locus_tag="VKJ77_26145"
     CDS             <1..760
                     /gene="metF"
                     /locus_tag="VKJ77_26145"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006052550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HMC48821.1"
                     /translation="QLKALNPKFVSVTFGAGGSTQQGTLDTVVEMMKQGLEAAPHLSC
                     IGSSKESLRAILGAYREHGIRHIVALRGDLPSGMGEVGELRYASELVGFIRAEHGDWF
                     NIEVAAYPEYHPQARSPKSDMDNFVRKVQAGANSAITQYFFNADAYFRFVDDARKLGV
                     DVPIVPGIMPITNFSQLMRFSEMCGAEVPKWITRRLESFGDDKEAIRAFGLDVVTGLC
                     ERLVKEGAPGLHFYTLNGAAASKTICERLALPKA"
     gene            1196..>2173
                     /locus_tag="VKJ77_26150"
     CDS             1196..>2173
                     /locus_tag="VKJ77_26150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007179911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HMC48822.1"
                     /translation="MKKIGLLRAARLSMALSAAIAASLVTASVAHAAPIPNKTLIYCS
                     EGSPAGFDPAQYTTGTDFTANTFTVYNRLVEFERGSTKVEPGLAEKWDVSPDGLTYTF
                     HLRHGVKFQTTSFFKPTRDFNADDVLFTFNRMLDPNQPFRKAYPASFPYFTDMGLDKL
                     ITKVEAVDPYTVKFTLKEVNAPFIQNMAMEYASIQSDEYAQQLLKAGKASDINQQPVG
                     TGPFIFRSYTKDATIRFDGNPDYWKPGAVKISKLIFSITPDAAVRVQKLKSNECQVMS
                     YPRPADIAPLKAEANIDMPSQPGFNLGYLAYNVTHKPVDNVQVRQALDMA"
BASE COUNT          465 a          639 c          610 g          459 t
ORIGIN      
        1 gcagctcaag gcgctcaacc cgaagttcgt ctccgtgacg ttcggcgcgg gcggttccac
       61 gcagcaaggc acgctcgata ccgtcgtcga gatgatgaag cagggactcg aagcggcgcc
      121 gcatttgtcg tgcatcgggt catcgaagga gagtctgcgg gccattctcg gcgcgtatcg
      181 cgagcatggc attcgtcata ttgtcgcgtt acgcggcgat ttgccttcgg gcatgggcga
      241 agtcggcgag ttgcgatacg catcggaact ggtcggtttt atccgcgccg agcatggcga
      301 ctggttcaac attgaagtcg cggcgtatcc ggaatatcac ccacaggcgc gttcgcccaa
      361 atccgatatg gataacttcg tgcgcaaggt gcaggccggc gcgaattcgg cgatcacgca
      421 gtacttcttc aacgcggacg cgtatttccg tttcgtcgat gacgcgcgca agctgggtgt
      481 cgatgttcct atcgtgccgg gcatcatgcc gatcacgaat ttctcgcagc tgatgcgttt
      541 ctccgagatg tgcggcgcgg aagtgccgaa gtggattaca cgccgcctgg aaagttttgg
      601 tgacgataaa gaagcgatcc gcgcgttcgg actggatgtg gtgaccggtt tgtgcgagcg
      661 gctggtgaag gaaggcgcac cggggctgca tttttatacg ctgaacggcg cggccgcgag
      721 caagacgatt tgcgagcggt tggcgttgcc taaagcttga tgcttttggt ttacccgcgc
      781 ggcatccgcc gcgcggttct cgtcgcggtt ctcgtattta ccctcccttc tgtttaatca
      841 ccttgaaaca ttgtgcataa cgaaacatga tggactcatg ttttcggcgc gcaacaatcc
      901 tgatctttag cttaaattta catttctgtc gtgctacggt agcgcccgaa tttgccgtcg
      961 tgcgtgagtt tgccgaccca gcgcgaatcg atgaaaagcg cgctgaatcg accaaaaacc
     1021 tccgtaacgc gtagaagtta agcgaaaccc ggctttttta accctgttgc ctggcttgcc
     1081 ggacacacgc gcagacgcta tttcccatag ggaatttcgt cgccttgttc cccccggcaa
     1141 agctcagtaa tatcgcgcta cgctggtttt agccggcatc gatcctggag gaaacatgaa
     1201 gaaaattggc ctgttacgag ccgctcgtct gtcgatggct ttaagcgccg ccatcgcggc
     1261 ctcgctcgta accgcgagcg tcgctcacgc agcacccatt cccaacaaaa cgctcattta
     1321 ctgctcagaa ggcagcccgg ccggtttcga tcccgcgcaa tacacgacgg gcaccgattt
     1381 caccgcgaac accttcacgg tctacaaccg cctcgtggaa ttcgagcgcg gcagcacgaa
     1441 agtggaaccg ggcctcgcgg aaaagtggga tgtatcgccc gacggcctga cctacacgtt
     1501 ccacctgcgt catggcgtga agttccagac cacgtcgttc ttcaagccca cacgcgactt
     1561 caacgcggac gacgtgctct tcacgttcaa ccgcatgctc gacccgaacc agccgttccg
     1621 caaggcttac cccgcatcgt tcccgtattt cacggacatg ggcctggaca agctgatcac
     1681 gaaggtcgaa gcagtcgatc cgtacacggt caagttcacg ctgaaggaag tcaacgcgcc
     1741 gtttatccag aacatggcga tggaatatgc gtcgatccag tcggatgaat acgctcaaca
     1801 actgctgaaa gcgggtaagg cctcggatat caaccagcag ccagtcggca cgggtccgtt
     1861 tattttccgc agctacacga aagacgcgac catccgtttc gacggcaatc ctgattactg
     1921 gaaaccgggc gcagtcaaaa tctcgaagct gattttctcg atcacgccgg acgccgccgt
     1981 gcgcgtacaa aagctgaaga gcaacgaatg ccaggtgatg agctatccgc gtcccgccga
     2041 cattgcaccc ctgaaggccg aagcgaacat cgacatgccg tcgcaaccgg gcttcaacct
     2101 gggctacctc gcgtacaacg tgacgcacaa gcccgtcgac aatgtccagg tgcgtcaggc
     2161 gctcgacatg gcg
//
LOCUS       DATGBK010001860         6458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_137915, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001860 DATGBK010000000
VERSION     DATGBK010001860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 6458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6458
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137915"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..747)
                     /locus_tag="VKJ77_26155"
     CDS             complement(<1..747)
                     /locus_tag="VKJ77_26155"
                     /inference="COORDINATES: protein motif:HMM:NF012876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HMC48823.1"
                     /translation="MHKLLRPLNTIFGRLALLSVGLLVMMQLTWVVIVDRERGIIEAD
                     HVSRLVRVVLDPAASAADGSSDRLAAALGLRLVDAGARSAPLGCPVPCADTHGPFETS
                     LRADLPPQSRVVLDHTETIMWVRYGPSSRWLVIPAVVPPVSRFLSASALMLFLAIAIA
                     LLGAWQIQKPVLRLARAAREFRLGHRPPMVLANGPSEVKGLIGDFNEMARELSDAEQE
                     RAVMLAGVAHDLRAPITRIQVRANLVPDITA"
     gene            complement(752..1504)
                     /locus_tag="VKJ77_26160"
     CDS             complement(752..1504)
                     /locus_tag="VKJ77_26160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017425091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC48824.1"
                     /translation="MSNSETRILLVDDDAALRDLLQVFFDERGLSVTFREDARDLNQV
                     VMRERPSIIVLDLMMPGIDGLTALTRLRADNDDTPVIMLTARADDIDRVVGLEMGADD
                     YLGKPFMPRELLARINAVLRRQGVSRSPSPTTQRSVPVRFGRFELDNDRRTLTRDGEP
                     QRLTNSELRLLNVLARHPMETLSRSRLLTLWYGTHADVTERGIDVPIWRLRQLIEEDP
                     SQPRIIQTMRGIGYMFVPPRVPGDASDAEPDA"
     gene            complement(1924..2094)
                     /locus_tag="VKJ77_26165"
     CDS             complement(1924..2094)
                     /locus_tag="VKJ77_26165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48825.1"
                     /translation="MPDINDRICKRRTAARIDNRYIQQQGNARASLGDVGSEQLSFNV
                     VWADLLFGAQLA"
     gene            2263..2670
                     /locus_tag="VKJ77_26170"
     CDS             2263..2670
                     /locus_tag="VKJ77_26170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48826.1"
                     /translation="MQRTDPQGNVVFQTIFPGFYPGRTNHIHFKVRVAGNTSDGSHSG
                     EHVSHIGQIFFPEKLTVELMQNRPYCDHRIERTPLSDDGVFVDQQGATSIARVQAIGQ
                     SAIASGLRAQIVAVVDPDAEPAAAGRSPRAFHG"
     gene            complement(2778..3710)
                     /locus_tag="VKJ77_26175"
     CDS             complement(2778..3710)
                     /locus_tag="VKJ77_26175"
                     /inference="COORDINATES: protein motif:HMM:NF013504.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 6 protein"
                     /protein_id="HMC48827.1"
                     /translation="MLIKHALVIAVLVFLGVTQAHADAGFYVDPDSSPALWVRAHQAD
                     PRAPRIAEAIANVPMARWFGNWSGDVHKAVKRFVDKANATNREPILVAYNIPHRDCGG
                     ASAGGVGDASAYQVWIDSFSRGLSNRRAIVIVEPDSTAQLDCFKTDGERDERLGLLRY
                     AVSRFRLNAPAADVYLDGGNAHWVPAATMAARLNAAGLSEAKGFALNVSNFYTTEESA
                     AYANSVNAALGAQFGYSKPFVVDTSRNGKGSDGQWCNPPGRMIGARSSGASGTMLPVW
                     IKVPGNSDGPCGSAPTSPAGAFSPELAVRLIDGD"
     gene            complement(4088..4606)
                     /locus_tag="VKJ77_26180"
     CDS             complement(4088..4606)
                     /locus_tag="VKJ77_26180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014005382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
                     /protein_id="HMC48828.1"
                     /translation="MATQRSLYERIFQVLLFEGLAISIFSPVLSWIVDKPLGDATALT
                     VAISIVAMLWGFTFNSFFGILISHASSKVQKWKRVLHALGFETGLVLIAVPLSAWWLQ
                     MTFVQALLMDLGLLLVFLPYTFCFYWAYDMLRQRLVKAPLRPSPLSPHKPLVAERQSH
                     YAPAIPAKITGS"
     gene            4695..5576
                     /locus_tag="VKJ77_26185"
     CDS             4695..5576
                     /locus_tag="VKJ77_26185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008163226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HMC48829.1"
                     /translation="MVASIDALIVFSEAAAAGSFSAAARKLGRSQSTVSTIIADMEID
                     LAVALFDRTTRKPRLTAHGEALLANARETLEAHDRLVQAAARLSAGLEPSLSLAISNT
                     YQPPHYEKLLVAFEKRFPTVELECLVKEDEDVVSLVQERRAELGVVAALASYPPDVRS
                     IRLAESSELALFVATGHPLSGVPDLTMETLAKHRELRITTGVKPGEHQRSVRVWSADS
                     YLLLLEMAELGFGWTELPRWVADRFGAKTLKELSARGWPRLVAVDALCLKGASLGLAG
                     NWLLDALTTLGAKADSK"
     gene            complement(5591..6430)
                     /locus_tag="VKJ77_26190"
     CDS             complement(5591..6430)
                     /locus_tag="VKJ77_26190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HMC48830.1"
                     /translation="MATRKTTDKAGKAGQIRIGIGGWTFEPWRGTFYPEGLVQKRELE
                     YASRKLTTIEINGTFYGSQKPATFVKWHDETPDDFVFSLKAPRFATNRRVLAEAGDSV
                     ERFLASGVLELKNKLGPINWQFAPTKQFDADDFEAFLNLLPHKVDGREIRHALEVRHE
                     SFRDEAFVALARKHGVAIVMAGDSKYPQIADATAKFVYARIMGTTEQFAQGYDDDTLD
                     LWTERARDWASGGTPKGLETFGKPAAASTPRDVYLYVISGFKTHNPAAGIAMIERLSA
                     SSA"
BASE COUNT         1310 a         1897 c         1971 g         1280 t
ORIGIN      
        1 tgcggtgatg tccggcacaa ggttcgcgcg gacctggatg cgcgtgatcg gcgcgcgcag
       61 gtcatgcgcc acgccggcca acatgaccgc gcgctcctgt tcggcgtcgc tcagctcacg
      121 ggccatttcg ttgaagtcgc caatcaggcc cttcacctcc gatgggccgt tggccaagac
      181 catcggcggg cgatggccca acctgaactc acgtgctgcc cgtgcgagcc tcaatacggg
      241 tttctgtatc tgccacgcgc cgagcagtgc gatagcaatg gcgaggaaca gcatgagcgc
      301 gctagcgctc agaaagcggc tcaccggggg tacgacggct ggaatcacaa gccatcgcga
      361 cgaggggcca taacgcaccc acatgatcgt ctcggtgtgg tcaagcacta cgcggctctg
      421 cggcggcagg tccgcacgca aggaggtctc aaatgggccg tgtgtatcgg cgcaaggcac
      481 cggacaaccg aggggcgcgg accgcgctcc ggcgtcgaca aggcgcaggc cgagcgcggc
      541 ggcgagacgg tcgctggagc cgtcggcagc actcgccgct ggatccagca ccactcgcac
      601 cagccggctg acgtgatccg cctcaatgat cccgcgctcg cgatcgacga tcacgaccca
      661 agtcagttgc atcatgacga gcagacccac ggacagcagc gcaagccggc cgaagatcgt
      721 gttgaggggg cgcagcagct tatgcattgc gttaggcatc gggttcggca tccgatgcat
      781 cgccggggac tcgcggcggc acgaacatat agccgatacc gcgcatggtc tggataatgc
      841 gcggctgcga cggatcctct tcaatcagtt gccgaaggcg ccagatcggg acgtcgatac
      901 cgcgctcggt cacgtccgcg tgcgtgccgt accagagcgt gagcagccgc gagcgcgaga
      961 gcgtttccat tgggtggcgc gcgagcacgt tgagcaggcg caactcgctg ttagtgaggc
     1021 gctgcggctc gccgtcgcgc gtgagcgtgc ggcggtcgtt gtcgagttcg aagcgcccga
     1081 aacgcaccgg caccgaacgt tgagttgtcg ggcttgggga ccggctgacg ccctggcggc
     1141 gcagcaccgc gttaatgcgc gcaagcagct cgcgcggcat gaagggcttg ccgaggtagt
     1201 cgtcagcacc catttccagg ccaacaacgc ggtcgatgtc gtccgcgcgc gccgtcagca
     1261 taatgaccgg agtgtcgtca ttatccgcgc gcagccgggt gagcgccgtc aggccgtcga
     1321 tgccgggcat catcaggtcg agcacgatga tcgacgggcg ttcgcgcatc accacctgat
     1381 tcaggtcgcg tgcgtcttct cggaacgtga ccgagaggcc gcgttcatcg aaaaaaacct
     1441 gcagcaagtc gcgtagcgcg gcgtcgtcgt cgactagaag gattcgggtt tcgctgttgg
     1501 acatggcttg agcctggatg agcgcttgac gagctttgta agctgcaatc gaagcgacta
     1561 taaacgatgc ccgccaaggc cgtgttacgg cgccttagtg attctttcag cgctttctcg
     1621 caagtaatgc tggaaagcgg gtgctcgaca tgtgctttgc tgcgcgctgc atggtcgcct
     1681 tgaaatgcct aagccttcgt aaaagagcgg taaccaatga aaattcccgg cgtcttatag
     1741 tgcagacgct gcggccgaat tgcaacgatc aggccgcgca attcccgcca atcaagagtg
     1801 agccagatgg ttagcaagac ccgtattgcc cgtcgtcaat tcatttccac caccattgcc
     1861 ctcggggccg cactaagatt tccgacaggc gcgcaagcga gcggaaacac aagcagcaga
     1921 ggcttatgcc agctgagcgc cgaacaggag gtcggcccat actacattga aggagagctg
     1981 ctcagatccg acatcaccga gggacgcgcg ggcattccct tgctgttgaa tatagcggtt
     2041 gtcgatgcgc gccgctgttc gccgcttgca aatgcgatcg ttgatgtctg gcattgcgac
     2101 gcccttggta tctattcagg tttcaccagg cagagtacgt taccgccggg gccgccgccg
     2161 ggcgctccga atttgggccc tcctcccggg gttggcgacc gtcgtagaga tccacctccg
     2221 ccgccaagcc gacctggtga tcgactgact ttcctaaggg gcgtgcagcg cacggatcct
     2281 caaggaaacg tcgtcttcca gacaatcttc cccggctttt atccgggacg gaccaatcac
     2341 attcacttca aggtgcgggt cgccggcaat accagcgacg ggtcgcatag tggcgagcat
     2401 gtctcccata tcggtcagat tttctttcct gagaagctga ctgtcgagtt gatgcagaac
     2461 cggccttatt gcgatcatcg gattgaacgc acgcccctgt ccgacgacgg agtattcgtc
     2521 gatcagcaag gcgcgacatc gatagcacgg gttcaggcaa tcggtcagtc cgcgatcgca
     2581 agtggattgc gcgcgcagat tgtcgcggtg gtcgatccgg atgcagagcc ggcagcagca
     2641 gggcgttcgc ctcgcgcgtt tcacgggtga cctgctcgca agacagctta ctttttgaag
     2701 cgagcaacgg ctaagcagcg cagttattga acgcccccaa gccgctagcg gatagggaag
     2761 cggcacgccc ttacccttca gtcgccgtcg atgagacgca ccgccagttc cgggctgaac
     2821 gcgccggctg gtgacgtggg agcggacccg cagggaccgt cggaatttcc cgggaccttg
     2881 atccatacgg gcagcatggt gcccgacgcg ccactcgagc gcgcgccgat catcctgccg
     2941 ggcggattgc accactggcc atccgaaccc ttgccgttac gacttgtatc gacaacgaat
     3001 ggtttgctat agccgaattg cgcccccaag gcggcgttca ccgagtttgc gtaagccgcc
     3061 gattcctcgg tcgtgtagaa attggatacg ttcaatgcga agcctttcgc ctcgctcaaa
     3121 ccggcagcgt tgagccgggc cgccatggtg gcagcgggaa cccaatgtgc gtttccgccg
     3181 tcgagataga cgtctgcggc cggcgcgttg aggcgaaagc gcgagaccgc ataacgcagc
     3241 aggccgagcc gctcgtcgcg ctcgccatcg gtcttgaaac agtccagttg cgcggtcgaa
     3301 tcaggctcga caatgacaat cgcacggcga ttgctcagac cgcgcgagaa tgagtctatc
     3361 cagacctgat aagccgaggc gtcacccacg ccgcccgccg atgccccgcc gcagtcacga
     3421 tgagggatgt tgtaggcgac caggatgggt tcgcggttgg tggcattcgc cttgtcgacg
     3481 aagcgtttga ctgccttgtg cacgtcgcca ctccagttgc cgaaccagcg tgccatgggt
     3541 acgttggcaa tcgcctctgc aatgcgcggc gcacgcgggt ctgcttgatg cgctcgcacc
     3601 cacaatgccg ggctagagtc gggatcgaca taaaacccgg cgtccgcatg cgcttgcgta
     3661 acacccagaa aaaccagcac cgcgataaca agagcgtgtt tgatgagcat gttcagttca
     3721 tttctgaggg aggacgtagc cgtgcaattc ttcgttttga gccatcgggc gctcattatc
     3781 gataaagcgt ggccgcgcag agcctgtcta aaacatcgcg taaaaacacc cggttcaaaa
     3841 tcggtcaatc acgccgagtt gtacaccgcg taccggtgcg cccgggcagg cgaccggcaa
     3901 ttccgtcaca ctgacgccgc gcaggggaat tcatcgcagc cgaatcagct tcgtggcaat
     3961 tgaactccgc gactgtagca agttgtcccg cggttgcaac gaaattcgca acgacgcatc
     4021 gaacaacgcc acattgcgtg gcgtatgttc gatgcgtcgt tgatgcacta acgtggagac
     4081 ctcgctgtca tgacccggtt attttcgccg gaattgcagg agcgtaatgc gactggcgct
     4141 cagcgaccaa aggcttatgc gggcttaaag ggcttggcct aaggggcgct ttgaccagcc
     4201 gctgtcttag catgtcgtac gcccaataaa aacaaaacgt gtacgggagg aaaacgagca
     4261 atagtccgag atccatcagc agcgcctgaa caaacgtcat ttgcagccac catgcggaca
     4321 aggggaccgc tatgaggacc aaacccgttt cgaaaccgag ggcatgaaga acacgcttcc
     4381 acttctgaac cttgcttgac gcatgggaaa tgaggatacc gaagaaagag ttgaacgtga
     4441 aaccccacag catggcgacg atcgaaattg caacggtcag agccgtggcg tcgcccagag
     4501 gtttatcgac gatccatgac aggacaggag aaaaaatgct gatggcaagt ccttcgaaga
     4561 gaagtacctg gaatatgcgt tcatataggc tgcgttgcgt ggccatgtcg acctcacttt
     4621 tgaatagacg ttgccatttt gagggggtgc ccttaatatc ccaagttgct tactatcgga
     4681 aaatcagata gatcatggtc gcttctatcg acgccttgat tgtgttttcg gaggccgccg
     4741 ccgcgggttc tttctcagcc gcggcgagaa agctggggcg cagtcaatcg actgtcagca
     4801 cgatcattgc ggatatggaa attgacttgg ccgtcgcgct ctttgatcga accacccgaa
     4861 agcctcgtct taccgcgcat ggcgaagcgc tgcttgccaa tgcccgcgag acccttgagg
     4921 cgcacgatcg cttggtacaa gcggccgccc ggctaagtgc ggggctggag ccaagcttga
     4981 gtctggccat atcgaacacg taccagcctc ctcactatga gaagttgctc gtggcattcg
     5041 aaaagcgttt tcccacggtc gagcttgagt gcctcgtcaa ggaggacgaa gacgtggttt
     5101 cgctggtgca ggagcgccgc gcagagcttg gcgtggtggc ggccctggct agctatcctc
     5161 ccgatgtccg ctcgatcagg ctggcggagt catcagagct ggcattattc gtcgcgacag
     5221 gacatccctt aagcggcgtt ccggatctga caatggagac gctcgccaag caccgtgaat
     5281 tgcgaatcac cacgggcgtg aagccgggcg agcatcaaag aagcgtgcgc gtctggtctg
     5341 ccgacagtta tttgcttctg ctggagatgg cggagttggg cttcgggtgg accgagttgc
     5401 ctcggtgggt tgctgatcgt ttcggcgcaa aaacgttgaa agagttatcg gcgcgtgggt
     5461 ggccccggtt ggtcgcggtc gacgccctgt gtttaaaggg cgcctcgcta ggactcgcgg
     5521 ggaactggtt gctggatgcg ctgacaacgc tcggcgcaaa ggccgattcg aagtaagtca
     5581 gaatgatcca ctaagcgctg ctggcgctta gtctctcgat catcgcaatg cccgcagccg
     5641 gattgtgtgt cttgaagccg ctgatcacgt ataaatagac gtctcgcggc gtactcgccg
     5701 cggctggttt gccgaacgtt tcaagtccct tcggggtgcc accggatgcc cagtcgcgag
     5761 cccgctcagt ccatagatcc agggtgtcgt cgtcatagcc ctgcgcaaac tgctcggtcg
     5821 ttcccatgat gcgcgcatag acgaactttg ccgttgcgtc cgcgatctgt ggatatttcg
     5881 aatcccccgc catgacgatg gcaacaccgt gtttgcgcgc gagggcaacg aatgcctcgt
     5941 cgcgaaaact ctcatgccgt acttcgagcg catgccggat ctcacgacca tcgactttat
     6001 ggggcaacag gttcaggaaa gcttcgaagt cgtccgcatc gaattgtttg gtcggggcga
     6061 attgccaatt gattgggccg agcttgttct tcaattcgag cacgccgctc gcgaggaaac
     6121 gctcgacgga atcgccggct tccgcaagca ctcgcctgtt cgttgcgaaa cgcggtgcct
     6181 ttagcgagaa gacaaaatca tccggggttt cgtcgtgcca cttcacgaac gtggcgggct
     6241 tctgcgagcc gtagaacgtg ccgttgatct cgattgtggt cagcttgcgg ctagcgtatt
     6301 cgagctcgcg cttttgcacg agtccttccg gatagaacgt gccgcgccac ggctcgaagg
     6361 tccagccgcc gatgccgatc ctgatctgcc cagctttgcc ggctttatcc gtcgtcttcc
     6421 gcgttgccat gaatgagatc cctcccaatg cccacgat
//
LOCUS       DATGBK010001861         2171 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_277365, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001861 DATGBK010000000
VERSION     DATGBK010001861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277365"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..990)
                     /locus_tag="VKJ77_26195"
     CDS             complement(<1..990)
                     /locus_tag="VKJ77_26195"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HMC48831.1"
                     /translation="MSLVEVARPLPPSLWAATAEPAVDTPSLDTSVKTDVLIVGAGYT
                     GLSSALHLAGHGLKVCVIDANEPGWGASGRNGGQVIPGLKYDPDELIRRYGSRDGDAL
                     AQIAGSAADTVFDLIERHHIQCDATRNGWIQPTHSDKLLGTLHARARQWEARGAPIEL
                     LDRSQVAKRLGTEAFVGGWIDKRAGSVQPLSYARGLARAAKAAGVAIHGATRAVALER
                     SSEGWRVRCAGGVVIDAKQVLLATNGYTDALWPGLAQSVIAANSFIVATRPLPDDIAA
                     TVLPGREVASDSRRLLLYFRKDAAGRLLMGGRGPFRDPRTAADWAHLERAARLM"
     gene            complement(1000..1746)
                     /locus_tag="VKJ77_26200"
     CDS             complement(1000..1746)
                     /locus_tag="VKJ77_26200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010112881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HMC48832.1"
                     /translation="MIKVDSIHKRFHDQEVLKGVSLNVEAGQVVCLIGPSGSGKSTLL
                     RCINGLETHDAGTITVDGRAVDARSHHIHELRMQVGMVFQRFNLWPHRTALENVCEGP
                     VFVKKEGRVQAREKARHLLDKVGLGHRMDAYPSELSGGQQQRVAIARALAMEPKAILF
                     DEPTSALDPELVGEVLSVMRQLAYDGMTMIVVTHEMSFAREVADRVCFLYDGTICEEG
                     AAADLLERPQHPRTRDFLRRVLTSSDAPST"
     gene            complement(1743..>2171)
                     /locus_tag="VKJ77_26205"
     CDS             complement(1743..>2171)
                     /locus_tag="VKJ77_26205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011489026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC48833.1"
                     /translation="PDLGVSLSAFQAGFIGLGIAYSVYQAENFRAGIQAIDHGQIEAA
                     QSIGMRGGLIMRRVVLPQAFKIALPSYGNTLVMMLKDSSLASTITVAEMTRAGQLIAS
                     STFQNMTVFTLVALLYLALSLPLVYGLRRLERRLGLKGKR"
BASE COUNT          421 a          685 c          674 g          391 t
ORIGIN      
        1 catcaaccgc gctgcgcgtt caaggtgcgc ccaatcggcg gcagtacgcg gatcgcggaa
       61 gggaccgcgg ccacccatta gcaggcggcc ggcagcgtcc ttgcggaaat acagcaagag
      121 ccgccgcgag tccgacgcga cttcgcgtcc aggcagtaca gtcgctgcga tatcgtcggg
      181 caaaggccgt gttgcgacaa tgaaactgtt tgccgcgatc accgattgcg cgaggccggg
      241 ccaaagcgca tcggtataac cgttggtcgc gagcagcacc tgtttcgcat cgatgacaac
      301 accgcccgca cagcgcacgc gccatccttc agagcttcgt tcgagcgcga cggcgcgggt
      361 ggcgccgtga atagcgacac ctgccgcctt cgccgcacgc gccagtccac gcgcgtaact
      421 caggggctgc acgctgccgg cgcgtttgtc gatccagccg cccacgaatg cttcggtgcc
      481 cagccgcttc gcaacctgag agcggtcgag tagttcaata ggcgcaccgc gcgcttccca
      541 ctgccgcgcg cgggcgtgca gcgtgccgag cagcttgtcc gaatgcgtag gttgaatcca
      601 gccattgcgg gtggcgtcgc attggatatg gtggcgttcg atcagatcga agaccgtgtc
      661 cgcggcgctg cccgcaatct gcgcgagtgc atcgccatcg cgtgatccat atcggcggat
      721 gagttcgtcg ggatcgtatt tcagcccggg gatcacctgg ccgccgttgc ggccggacgc
      781 gccccagccc ggttcattcg catcgatcac gcagactttc aagccgtgcc cggcaagatg
      841 taaggcgctc gacagacccg tataacctgc tccgacgatc agcacatcgg tcttgacgga
      901 ggtatcgagc gacggggtat cgacggccgg ttccgcagtc gcggcccaga gagagggcgg
      961 caacggtcgt gcaacttcaa caaggctcat gtcggatatt caggtcgaag gcgcgtcgga
     1021 ggaggtgagc acccggcgca ggaaatcgcg cgtgcgagga tgttgcggac gttcgagcag
     1081 atcggcggcg gcgccttcct cgcagatggt gccgtcgtag agaaagcaca ccctgtccgc
     1141 cacttcgcgc gcgaaactca tttcgtgcgt gacgacaatc atcgtcatgc cgtcataggc
     1201 aagctggcgc atgacgctca ggacctcacc gaccagctcc ggatcgagtg cggacgttgg
     1261 ttcgtcgaac aggatcgcct tgggctccat ggcgagtgcg cgggcgatcg ccacgcgttg
     1321 ctgctggccg cccgacaatt ccgacggata agcatccata cgatgcccga gcccgacctt
     1381 gtcgagcaga tggcgcgcct tttcgcgggc ctgcacacgg ccttcttttt tcacgaacac
     1441 aggaccctcg cagacgttct ccagtgcggt acgatgcggc cacaagttga agcgctggaa
     1501 caccatgccc acttgcatgc gcaattcgtg aatgtgatgc gagcgggcat cgactgctct
     1561 gccatccacg gtgatcgtgc cggcgtcatg cgtttccagg ccgttgatgc aacgcaggag
     1621 cgttgattta cccgaccccg acgggccgat caggcagacc acctggcccg cttccacgtt
     1681 taggctgacg cccttgagca cctcctgatc gtggaagcgt ttatgaatcg agtcgacctt
     1741 gatcatcgtt tccccttgag gccgagacgg cgttcgaggc ggcgcaagcc atagacgagc
     1801 ggcaggctga gcgcgagata aagcaacgcg accagcgtga ataccgtcat gttctggaag
     1861 gtcgacgatg cgatcagctg cccggcacgc gtcatttcag cgaccgtgat ggtggatgcg
     1921 agcgacgagt ccttcaacat catcacgagc gtgttgccgt aagacggcag cgcgatcttg
     1981 aacgcttgcg gcaacaccac gcggcgcatg atcagtccgc cgcgcatgcc gatggattgc
     2041 gccgcttcta tctgaccgtg atcgatcgcc tgtatacccg cgcgaaaatt ctccgcctga
     2101 taaacggaat aggcgatgcc cagtccgata aaacccgcct ggaacgctga caaactcacg
     2161 ccgagatcgg g
//
LOCUS       DATGBK010001862        10108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_322797, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001862 DATGBK010000000
VERSION     DATGBK010001862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 10108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10108
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322797"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3478
                     /locus_tag="VKJ77_26210"
     CDS             <1..3478
                     /locus_tag="VKJ77_26210"
                     /inference="COORDINATES: protein motif:HMM:NF025241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="strawberry notch C-terminal domain-containing
                     protein"
                     /protein_id="HMC48834.1"
                     /translation="INADETGMGKGRFVAAMMRYARLEGKTPHFLTIKPELFTDIFRD
                     IEDIGSGELFKKVFIFNDGVNIMRFGTEDQVLHRATSAQDRRLALANMEIDRDGDVAA
                     DMVLATYSQFQRAAHVNLKAQLLVAISSGNAMLFLDESHVAAGASNIAATVGEAVANS
                     GGVVYSSATPLKGVANFAIYNKVFPASVNLRDLPETLRAGGEALQEAISANMARDGVL
                     VRREHDFSKLTFVTRLPDDTRQALNIHMANKLSEILGTLSYMAGDVSKMVGKMNKSFE
                     AEWEEIPFGDREGSRMRASSMNFGSRLYAINRQFLLGIKIEEAVAVALEDLENGRKPV
                     IAVENTGESLLRQVLARRAGVAPMQEELDDLDERMGTLSDADRLRRDEVHAAIGQAMR
                     NVRLDGPPQFRELLEIMLERIGEIKVQGRYGDVSKKVPVSEEYKNAEARALAMIKEFP
                     DLPLTPLDVIRDEMTKRGFPITEVSGRTSSIAKVEDVWAATFHPKSDAVASVAGFQNG
                     KFDVIIITRSGSTGISLHATNRFADSDTRQRNFIVLQKASNIAEFLQWLGRVNRKDQI
                     IPPIITSLDSGLPAELRLTMMHNAKLRKLSANTTSNRENANTTGEDHDLLNDVGDDVA
                     LNWLLENPDVAHSLDIDLPSGEDIMLSRFGPECQYINKLLGRLMMVDVDKQREILDTL
                     SRRFTDRIVELEQRGENPFKVDVFEWGARKVHEEELQSGVLHPTGSTFDEAVKLVSLE
                     YERDVKPIRSGKLVTMIREGLAEYREFGPLDKDGELSSYKSALATLTEEALRKQLPMK
                     LRENAGSVATLMADNPKDVAAAQRAKEKQEFLMANLDSFKPGTYVVYDDLFKGEMKGH
                     VTAVDFPRDRNDAFLLSKYAMKIAVAGEDKLKEISLATLFNQGRAAGPAPQRSFDPEK
                     ADRLAYMKTRMEQLLKPYDEAPDGRITRRVHVLQGNLFRACELSSQQSLGAPILFSDA
                     DGNRQRAVLLRDSISPEAVKSMPIGLDSGDMSAYIDEFLRPDSKDFKSRATFGGLRIF
                     DSGVKEMKKGEGVMLEVLNGGQFFRLTIPGAKSRAGALMGDAMIFDLGEKKTSSSGLK
                     LKLTGSRTFMSVDVNRQQLPELMRLMQSNGHIGKFYLPEPKHEVLGELKAKYEQEFRN
                     GMPERQENSLSA"
     gene            3557..4087
                     /locus_tag="VKJ77_26215"
     CDS             3557..4087
                     /locus_tag="VKJ77_26215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48835.1"
                     /translation="MSEDILAGVAIPNIAVPVLTAHEVFSHFATSSKRAQLLTFLLDL
                     DRWDRWAVDFKENTSPDVFTIQLFLQELATFVERSALALHRVPKEFVELLAHLTTTRC
                     IYLIRYIAQKNPEFLDELTYLIEQDDGMNPDVSAIRRRIVAFSNARMLGEIFSGKRLE
                     RIVEIMRSYKDEERDA"
     gene            4080..4916
                     /locus_tag="VKJ77_26220"
     CDS             4080..4916
                     /locus_tag="VKJ77_26220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48836.1"
                     /translation="MLKSVVTAVRGTLDRKTLGGVLIGAAIMVSVVATAQTSSSGNWF
                     SSLFPLSSTGTGNSALISQQESVVATALNSEATDCANGADGTVGAAILAAQNVHQQIA
                     SATPAVESLFSPTNSCFIGQLADLSPAIPSLASILSAVESAVAAYAQKKVCTAVNNVT
                     GMVTTPINQAITSANSSLNVNNILNKEIGGQMKTIDPALGAQYHPTVPDGTYTINTNP
                     FNAAQTSFNTSTNSSGSTTTPMTNIFPTTTPAAAPASTPAATSSSTTSTSWWSSVSNV
                     FH"
     gene            4928..5701
                     /locus_tag="VKJ77_26225"
     CDS             4928..5701
                     /locus_tag="VKJ77_26225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48837.1"
                     /translation="MNKQLVKGLSVVAVTYVLVLAASNASAQSFSFQSVIQWLTSMQS
                     QTSAWAVATKQTAVSADVLSSSLATNAQQLSTAMGAMSMSDRVTKAVMSVDGTYGQPV
                     TLKCVAQRDSAMQVEAWQQVSNDRSKLMSTFASTRVIDKSYADRERMALHKDSYCTVS
                     EAKSGMCQLKANGMQGWDSNYGGAFGENTLPAEGELAGYAYVAMVADTRAPASLDCKS
                     EACNAAAAEQLEVAAQSTMVADSLVGQVLERRVPVLTGK"
     gene            5704..6849
                     /locus_tag="VKJ77_26230"
     CDS             5704..6849
                     /locus_tag="VKJ77_26230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48838.1"
                     /translation="MKLWFMRLSPIAAGVVTCFVTGSAGAALYGFGPAEAWTMAQISS
                     LTASATGNITTFGSTFGTNMATQYQQVISAIAVATKQEALGATVVSDGAREASSQLVN
                     AVRAQRTSDQIASTYLDYNPTTGQGFSPCLVNAKNRTLDGAFASVRSTANSSVAALDV
                     APGHMVDSVGAAMAQRLASHRSNFCSQAEATAGLCTLSTLPGGDTNAALMFEPTNPGS
                     LQQQAQQAYMQHVLGAPDPGIAAGAGRTASGQQYMMSKNSKDALLSIPAYSLSMIQAA
                     NTRVPALNNMSPNEVLKLRVNAYFGGNEAQDWSKSLTAQSERGLMVEAVKMDGLGVWM
                     RHEQYKQNQRLELNLAALALAASDDAKNNVTGKYDRMLRESAAGAIK"
     gene            6869..7171
                     /locus_tag="VKJ77_26235"
     CDS             6869..7171
                     /locus_tag="VKJ77_26235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48839.1"
                     /translation="MFEKLGRDTFVWLNENNRKKQLAAVHHEPKGARVVMVTGEMRLL
                     AGLDKDETTRLFMYLGFNGCGKHGFDTPAFAPFLTPDAALLARGCQDEVANKQDMK"
     gene            7201..8325
                     /locus_tag="VKJ77_26240"
     CDS             7201..8325
                     /locus_tag="VKJ77_26240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48840.1"
                     /translation="MGLTIALTSTVSFAFFCPPQYQEETVAPAFASAASAISAAMTGV
                     DTALNAEMVMYSQQLLSAVAVLTKQKAVAADQMSDANRTAGQATAIALNTLSQTERVK
                     QARFEYGAEFGQGYQPCTVYAGRNLIANRDAEMGEERRNRIMSEVISAPGRYVDPIQA
                     QQVLATEHQTYFCTADQVKSGMCDKVGPMPGASVTAATLFEPTMEADQLYRAKVAFVN
                     NVVGLPDAPIPASAANTQAAAAYALAKAQKDALMSPAITSLKELQLEYTGVTAAHGGS
                     DIPMSLRVDREVQRYLGNSPEYESWAKVMSAQNQRGLLVEMLKVKALDLVLMEKQYRQ
                     YERMEANLSTLVGGQLRKRSEQASGAADSAARDQVKGQIK"
     gene            8322..9455
                     /locus_tag="VKJ77_26245"
     CDS             8322..9455
                     /locus_tag="VKJ77_26245"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018310641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HMC48841.1"
                     /translation="MMGQGTRRAAALGLLAISFAALAQDTCMVPPTTQQQVSGRFGKF
                     RPGGAGNFGSGNANPHMHDGLDFTTGGVAGAVLATTDGTVTWARLRGSAGNTVMIKRG
                     NGEIVAYYHMSSIAVNEGDTVAAGQRIGTSGNTGMGAGSAVHLHFVYGVPNSSNVRAK
                     SFSADAGKNPSFNPAQLPNSISSTTFGYPTDPSPYFCQSFPIQNDGLYPVLGDNTKDQ
                     YARLFGSTPTMGVPPSMQFDATQVAAANGDALQAAARGGSGNLASMLSDSDGYGALPS
                     APLGDYETMSPLEMMSTEAKRRFSDAQWSTNVVKVSSRALWVDYVRAVGVSTYMEEAI
                     REKKERVEALLALYTSQKLAARRARVSYAAQRAQQAAVVGAIK"
     gene            9535..>10108
                     /locus_tag="VKJ77_26250"
     CDS             9535..>10108
                     /locus_tag="VKJ77_26250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48842.1"
                     /translation="MSANDNKAVEAAKGADDGPRMEDMVDDMSGGERFAELPRFGPPR
                     AVKQVSALDAIAPAAAASPRAEVIAAADVLSSATGSAETAIPAVAAGSAAPVEEVAAA
                     DVAVVQAEPAGASSEGGTQAAVAAAVAAQEAQYVAQVVNAEPKFVLDAVDDPIAELAA
                     MTVGPEAAPGGASSIGGLNALRAAVSDVMAQ"
BASE COUNT         1997 a         2724 c         3403 g         1984 t
ORIGIN      
        1 catcaacgcc gacgagaccg ggatggggaa aggtcgtttc gttgcagcca tgatgcgcta
       61 cgcgagactg gagggcaaga caccgcactt cctgacgatc aagccggagc tgttcaccga
      121 tattttccgg gacatcgagg atattggttc cggtgagctg ttcaagaagg tgttcatttt
      181 caacgacggg gtgaacatca tgcgcttcgg gaccgaggat caggtcctgc accgggccac
      241 gtcggcgcag gaccgccgac tggcgctggc caatatggaa atcgaccggg acggcgatgt
      301 tgctgccgac atggtactgg cgacgtactc gcagttccag cgcgccgcgc acgtgaattt
      361 gaaggcgcag ttgctggtgg cgatcagcag tggcaatgcg atgctgtttt tggacgagtc
      421 gcatgtggcg gccggggcgt caaacatcgc cgcgaccgtc ggcgaggcgg tggccaacag
      481 tggcggtgtg gtgtactcgt cggcgacgcc attgaaaggc gtggcgaact tcgccatcta
      541 taacaaggtc ttcccggcat cggtcaacct cagggacttg ccggaaacgc tgcgtgccgg
      601 tggcgaagcg ttgcaggagg cgatcagcgc aaacatggcg cgcgatggcg tgcttgtgcg
      661 ccgggagcat gatttttcga agctgacgtt cgtcacacgc ctgcccgacg atacgcgcca
      721 agcgctgaat atccacatgg ccaacaagct gtcggagata ttgggaacgc tctcctacat
      781 ggctggcgac gtgtcgaaga tggtcggcaa gatgaacaag tctttcgagg ccgagtggga
      841 ggagattccg ttcggtgatc gtgagggttc gcgcatgcgc gcgtcgagca tgaatttcgg
      901 ttcgcgcctg tatgcgatca atcgccagtt cttgctgggg atcaagattg aagaggctgt
      961 tgcggtcgcg ctggaggact tggagaacgg gagaaagccg gtgatcgccg tcgagaacac
     1021 cggcgaatcg ctactgcggc aggtgctggc gcgccgggct ggcgtcgcgc cgatgcagga
     1081 agagctggac gatctcgatg agcgcatggg aacgctgtcg gacgcggata gactgcgtcg
     1141 cgacgaggtg catgcagcca tcggtcaggc aatgcgcaat gtgcgactcg acgggccgcc
     1201 gcagttccgc gagctgttgg aaatcatgct ggagcgtatc ggtgagatca aggtgcaagg
     1261 ccggtacggc gatgtgagca agaaagtgcc tgtcagcgag gaatacaaaa atgccgaggc
     1321 gcgcgcgctg gccatgatca aggagtttcc cgatctgccg ctgacgccac tggacgtaat
     1381 tcgcgacgag atgaccaagc gtggcttccc gatcacggag gtgtcgggcc gtacgtcgtc
     1441 gattgccaaa gtggaggacg tgtgggcggc gacgttccat cccaaatcgg atgcggtggc
     1501 cagcgttgcc gggttccaga atggcaagtt cgatgtgatc atcattacgc gctctggctc
     1561 cacgggcatc tcgttgcatg cgactaaccg atttgccgat tcggataccc ggcagcgcaa
     1621 tttcattgtg ctccagaagg cgtcgaacat cgccgagttc ttgcagtggc tgggccgggt
     1681 caatcgcaag gaccagatca tcccgccgat catcaccagt ctggactcgg gtctgcctgc
     1741 tgagctgcgc ttgaccatga tgcacaacgc caaactgcgt aagctctcgg cgaacacgac
     1801 gagcaatcgc gagaacgcga acaccacagg cgaggaccat gatctgctca acgacgtcgg
     1861 cgacgacgtg gcgctgaact ggttgttgga aaacccggat gtggcgcatt cgctcgatat
     1921 cgatctgcct agcggcgagg acatcatgct gtcgcgcttc ggtccggaat gccagtacat
     1981 caacaagctg ctgggtcgcc tgatgatggt cgatgtggac aagcagcgcg agattctgga
     2041 tacgctctcg cgccggttca ctgaccggat cgtggagctg gagcaacgtg gggagaatcc
     2101 gttcaaggtc gatgtgttcg agtggggcgc gcgcaaggtt cacgaggaag agctgcaaag
     2161 cggcgtgctg cacccgaccg gtagcacgtt cgatgaggcg gtcaagctgg tgtcgctgga
     2221 gtacgagcgc gatgtcaagc cgatccgctc cgggaagctg gtgacgatga ttcgcgaggg
     2281 cttggccgaa taccgggaat tcggcccgct ggacaaggac ggtgagctgt cgagttacaa
     2341 gagcgccttg gccacgctga cggaggaggc gctgcgcaag cagttgccga tgaagctgcg
     2401 cgagaatgcc ggcagcgtcg ccaccctgat ggcggacaac ccgaaggatg tcgcggcggc
     2461 ccagcgggcg aaggagaagc aggagttttt gatggccaat ctcgactcgt tcaagcccgg
     2521 gacctatgtc gtgtacgacg acctgttcaa gggcgagatg aagggacacg tgacggcagt
     2581 cgattttccg cgcgaccgca acgacgcttt cttgctctcg aagtacgcga tgaagatcgc
     2641 tgtcgctggg gaggataagc tcaaggaaat ctcgctggcc accttgttca atcaggggcg
     2701 cgcggccggg ccagcgccgc aacgctcgtt cgacccggag aaggcggatc gtctggcgta
     2761 catgaagacg cgcatggagc agttgctcaa accttacgat gaggcccctg atggccggat
     2821 cacgcggcgc gtgcacgtgt tgcagggcaa tctgtttcgc gcgtgcgagt tgtcgagtca
     2881 gcagtcgctc ggcgcgccaa tcctgttctc agacgccgac ggtaaccgtc agcgtgcggt
     2941 gctgctgcgc gattcgatta gtccggaagc ggtcaagtcc atgcccatcg ggctggactc
     3001 gggggatatg agcgcgtata tcgacgaatt cctgcggccg gacagcaagg actttaaatc
     3061 gcgggcgacc tttggcggcc tgcgtatttt cgacagcggc gtcaaggaga tgaagaaggg
     3121 cgagggcgtg atgctcgaag tgctcaatgg cggccagttt ttccggctca ctatccccgg
     3181 cgcgaagtcg agagcggggg ccttgatggg tgatgcgatg atttttgatc tgggcgagaa
     3241 aaaaacatcc agctccggtc tgaaattgaa gctcaccggg agccggacat tcatgtcggt
     3301 ggacgtcaat cgccagcaat tgccggagct gatgcgcttg atgcaatcga atggccatat
     3361 tggcaagttt tacttgccgg agccaaaaca tgaggtgttg ggcgagctga aggcgaaata
     3421 cgagcaagag ttccgaaatg gcatgcccga gagacaagaa aattcccttt cggcatgaaa
     3481 tagctgtcaa aaagttgatg cgatcatttt tttgagcgac aatcagaata ttgatttttg
     3541 atagcgggaa taggtgatga gcgaagatat tcttgccggt gttgcaatac ccaatattgc
     3601 ggtaccggtg ttgacggcgc atgaggtgtt ttcgcatttc gccaccagta gcaagcgggc
     3661 gcagctcctg acgtttttgc tcgatctgga tcgttgggac cgctgggcgg tggactttaa
     3721 agagaacacg tcgcctgatg tttttactat ccagttgttt ttgcaggagc tggcgacgtt
     3781 cgtcgagcgc agcgctctgg cgctgcatcg ggtgccgaag gaatttgtgg agctgctggc
     3841 gcatctgacg acgacgcggt gcatctatct gattcgctat atcgctcaga aaaacccgga
     3901 atttctcgat gagctgacgt atttgatcga gcaggacgat gggatgaacc cggacgtgtc
     3961 ggctattcgc cgtcggatcg tcgcctttag caatgcccgg atgttgggcg agattttttc
     4021 aggaaaacgg cttgaacgca tcgttgagat tatgaggagt tacaaggatg aagaacgcga
     4081 tgcttaaaag cgttgtgacg gccgtacgcg gcacgctgga tcgcaagacg ttgggcggcg
     4141 tgctcatcgg ggcggccatt atggtgtccg tcgttgcgac cgcccagacg agtagcagtg
     4201 gtaactggtt ttcgagcctg ttcccgctca gcagcacggg gacgggcaat tcggcattga
     4261 tttcgcagca ggaatcggtg gtggccaccg cgctcaattc cgaggcgacg gactgtgcga
     4321 acggtgcgga cggcacggtg ggtgccgcca ttctggcggc ccagaacgtg caccagcaga
     4381 tcgcctctgc tacacctgcc gtggaaagct tgtttagccc gaccaattcg tgttttattg
     4441 gtcagcttgc cgatctctcg ccggccatcc cgagtttggc gtctattttg tcggctgtgg
     4501 aaagcgcggt tgccgcgtat gcccagaaaa aggtctgtac ggcggtgaat aacgtgacgg
     4561 gtatggtgac gacgccgatc aatcaggcca tcacgtcggc caacagcagc ttgaacgtga
     4621 acaacatcct gaacaaggaa atcggcggtc agatgaagac catcgatccg gcgctgggcg
     4681 cgcagtatca cccgacggtt cccgacggta cttacacgat caacacgaat ccgttcaatg
     4741 cggcgcaaac ctcgttcaat acctcgacca attcgtcagg cagcacaact acgccgatga
     4801 ccaatatctt cccgacgacg acgcctgcgg cagcaccggc ttcgactcca gcggccacgt
     4861 cgtcgtcaac caccagcacg agctggtggt ccagtgtgtc caacgttttc cattgatcgg
     4921 ggctatcgtg aacaagcagc ttgtgaaggg tctctcggtg gtcgcggtga cctatgttct
     4981 ggtgctggcg gccagcaacg cgagtgcgca gtcgttctcg ttccagtcgg tgatccagtg
     5041 gttgacgagc atgcagtcgc agacgtcggc gtgggctgtg gcgacgaagc agacggccgt
     5101 gtcggccgac gtgctctcgt cgtcgcttgc gaccaatgcg cagcagctct cgacggcgat
     5161 gggtgcaatg tccatgtcgg atcgtgtgac caaggcagtg atgtcggttg acgggacgta
     5221 cggccagccg gtgacgttga agtgtgtggc gcagcgcgat tcggcgatgc aggtcgaagc
     5281 gtggcaacag gtcagcaacg accgctcgaa gttgatgtcc acgtttgcgt ccacgcgggt
     5341 gattgacaag tcctacgccg accgcgaacg gatggcgctg cataaggact cgtattgcac
     5401 ggtgtccgag gccaagtctg gcatgtgcca gttgaaggca aacggcatgc aggggtggga
     5461 ttccaactac ggtggtgcgt ttggtgaaaa caccttgccg gccgagggtg agctggccgg
     5521 gtacgcctat gtggcgatgg tggccgatac acgtgccccg gcttcgctcg attgcaagtc
     5581 ggaggcttgc aatgcggcag cggccgagca gcttgaagta gcggcccaaa gcacgatggt
     5641 ggccgactcg ttggtggggc aggtgctgga gcgccgggtt ccagtgttga cagggaaatg
     5701 atgatgaaac tatggttcat gaggttgtcg ccgatagccg ctggtgtagt cacgtgcttc
     5761 gtgacgggca gcgccggtgc ggcgctgtat ggttttggtc cggccgaggc gtggacaatg
     5821 gcgcagattt cgtcgttgac ggccagcgca acgggcaaca tcacgacgtt cggatcgacc
     5881 ttcggcacga atatggcgac ccagtaccaa caggtgatct ccgctatcgc ggtcgcgacg
     5941 aaacaggagg cactgggtgc gacggtcgtg tccgacggcg cacgtgaggc gtcgtcgcaa
     6001 ctggtcaacg ccgtgcgtgc ccagcgtacc agcgaccaga tcgccagcac ctatctggac
     6061 tacaacccga ccacgggaca gggttttagc ccgtgtctcg tgaatgccaa gaatcgcacg
     6121 ctcgacggcg cttttgcgtc cgtgcgctcg acggctaatt cgagtgtcgc ggcgcttgac
     6181 gtggccccgg gtcacatggt cgattccgtc ggtgctgcca tggcgcagcg gctggcgagt
     6241 caccgttcga acttctgctc gcaggcggag gccacggctg ggctgtgtac gctgagcacg
     6301 ctgccgggcg gcgacaccaa cgcggcgttg atgttcgagc cgaccaaccc gggtagcttg
     6361 cagcagcagg cccagcaggc gtacatgcag cacgtgctgg gcgcgcctga tccgggcatt
     6421 gctgccgggg cggggcgcac ggcgtccggc cagcagtaca tgatgtcgaa gaattcgaag
     6481 gatgcgcttc tctcgattcc tgcgtatagc ctcagcatga ttcaagctgc caacacgcgt
     6541 gtaccggcgc tcaacaacat gtcaccgaac gaggtgttga agctgcgtgt gaatgcgtat
     6601 tttggcggca acgaggcgca ggactggtcg aaatcgttga cggcgcagtc cgagcgcggc
     6661 ctgatggttg aggccgtcaa gatggatggt ctgggcgttt ggatgcgtca cgaacagtac
     6721 aagcagaacc aacgccttga gctgaatctg gcggcgcttg cgctcgcggc ctctgacgac
     6781 gccaagaaca atgtgaccgg gaagtatgac cgcatgttgc gtgaatcggc cgctggcgcg
     6841 attaaataag ggttgtacgg atatgaattt gttcgagaaa cttggccgcg atactttcgt
     6901 gtggctcaac gaaaacaaca ggaagaagca gcttgctgcc gtccatcatg agcccaaggg
     6961 cgcgcgtgtg gtgatggtga cgggagaaat gcggctgctg gctggattgg acaaggatga
     7021 gaccacgcgc ttattcatgt acctcggctt caacggttgt ggaaagcatg ggttcgatac
     7081 cccggcgttt gctccatttt tgacgccgga cgcggcgctg ctggcgcgcg ggtgtcagga
     7141 tgaagtcgcc aataaacagg atatgaaatg atgaacacga ctacgcgccg caggctgacg
     7201 gtgggcctga ccatagcgct cacgtccacc gtgtcctttg cgtttttctg cccgccgcag
     7261 tatcaagagg aaacagtggc tcccgctttt gccagcgcag cgtcggcgat cagcgcggcc
     7321 atgaccggtg tcgataccgc actcaacgcc gagatggtca tgtacagcca gcagttgctt
     7381 tcggccgtgg cggtgctgac gaaacagaag gcggtggcgg cggaccagat gtcggacgcg
     7441 aaccgcacgg cggggcaggc cactgccatc gcgctcaata cgctgtcgca gactgagcgc
     7501 gttaagcagg cccggttcga gtatggtgcc gagttcggac aaggttacca gccttgtacc
     7561 gtgtatgcgg gccgcaatct gatcgcgaac cgcgatgccg agatgggcga ggagcggcgc
     7621 aaccgcatca tgtcggaggt gatctctgcc cccggtcgct acgtcgatcc gattcaggcg
     7681 cagcaggtgt tggcgaccga gcaccagacg tatttttgta cggccgatca ggtcaaatct
     7741 ggcatgtgcg acaaagtcgg accgatgccc ggcgcgtcgg tgacggcggc cacgttgttc
     7801 gagccgacga tggaggccga tcagctctat cgggcgaagg tggcgtttgt gaacaacgtg
     7861 gtgggcctgc cagatgcgcc gataccggcg tcggcggcga acacgcaagc cgcagcggca
     7921 tacgcgctgg ccaaggcgca gaaggatgcg ttgatgtccc cggcgatcac ttccctcaag
     7981 gagttgcagc ttgagtatac cggcgtgacc gccgcccacg gcggctccga catcccgatg
     8041 tcgttgaggg tggatcgcga agtgcagcgc tatctgggga actcgccgga gtacgagagc
     8101 tgggcaaagg tcatgtcggc gcagaatcag cgcggcctgt tggtggagat gctgaaggtg
     8161 aaggcgctcg acttggtgct gatggaaaag cagtatcgcc agtatgagcg catggaagcg
     8221 aatctttcga cgctggtcgg cggtcagttg cgtaagcgtt ccgagcaggc gtcgggcgct
     8281 gccgattcgg cggcgcgcga tcaggtcaag gggcagatta aatgatgggg cagggcactc
     8341 gccgcgcggc ggccttgggc ctgctggcga tctcgtttgc cgcgctcgcg caggatacgt
     8401 gcatggtgcc gccgacgacg cagcagcagg tctctggccg cttcggcaag tttcgtccgg
     8461 gtggtgctgg caatttcggc tcgggcaacg cgaacccgca catgcacgat ggtctggact
     8521 tcaccaccgg tggtgtggcc ggggcggtgc tggcgacgac cgatggcacc gtgacgtggg
     8581 cgcgcttgcg cggctcggca ggtaacacgg tgatgatcaa gcggggtaat ggcgagatcg
     8641 ttgcctatta ccacatgtcg agcatcgcgg tgaacgaggg cgacacggtg gccgccggcc
     8701 agcgcatcgg cacctctggc aacaccggta tgggagcggg cagcgcggtc cacttgcact
     8761 tcgtctacgg cgtccccaac agcagcaatg tgcgcgcgaa gtcgttctcg gccgacgccg
     8821 gaaagaatcc gtcgttcaac ccggcgcagt tacccaattc gatctcgtcc accacgtttg
     8881 gctacccgac ggacccgtcg ccgtatttct gccagtcgtt tccgattcaa aacgatggcc
     8941 tgtatccggt gttgggcgat aacacgaaag accagtacgc gcgtctgttc ggcagtacgc
     9001 ccacgatggg cgtgccgccg tcgatgcaat tcgatgcgac gcaggtcgcc gccgcgaacg
     9061 gcgacgcgtt gcaggccgcc gcgcgcggcg gcagcggcaa tcttgcgtcc atgctttctg
     9121 attcggatgg ttacggtgcg ctgccttcgg caccgctcgg cgattatgaa acgatgtcgc
     9181 cgttggagat gatgagcact gaagccaagc gccggttttc tgatgcccag tggagcacga
     9241 atgtcgtcaa ggtgagcagt cgtgctttgt gggtggacta tgtacgtgcg gttggcgtgt
     9301 ccacctacat ggaggaggcc atccgcgaga agaaagagcg cgtggaggcg ctgctggcgc
     9361 tctatacatc gcagaagctg gccgcccgga gggcgagggt gtcatatgcg gcgcagcgcg
     9421 cgcagcaagc ggctgtggtc ggggctataa agtaggtctg ccgtggcgaa cgggtatgaa
     9481 ttttaatgat gtcatttgag gggaaatagg atgcaggcac atgaagtggg agatatgagc
     9541 gcgaatgaca acaaggccgt cgaggcggcc aagggtgcgg acgatggtcc ccgcatggag
     9601 gacatggtgg acgatatgtc cggtggcgag cggttcgcag aattgccacg cttcggcccg
     9661 ccgcgtgcgg tcaagcaggt gtcggcgctc gatgccattg caccggccgc tgctgcgtcg
     9721 ccgcgcgcag aggtgatcgc tgccgctgac gtgctgtcgt cggcgaccgg ttcggctgaa
     9781 acggctatcc cggcggttgc agcgggttcg gcagcgccag tcgaagaggt tgccgctgcc
     9841 gatgtggccg ttgtgcaagc cgagcctgcc ggcgcttcaa gcgagggtgg cacgcaggcg
     9901 gctgtcgccg ccgctgttgc ggcgcaggaa gcgcaatatg tcgcgcaggt tgtcaatgct
     9961 gaacctaagt ttgtcctcga cgcggtggac gatcctattg ccgagctggc agcgatgacg
    10021 gtcggtcctg aggccgcgcc gggcggtgct tcatcgattg gcggcctcaa tgccctgcgt
    10081 gctgctgtca gtgacgtgat ggcgcagc
//
LOCUS       DATGBK010001863         2930 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_253415, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001863 DATGBK010000000
VERSION     DATGBK010001863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253415"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..1487
                     /locus_tag="VKJ77_26255"
     CDS             117..1487
                     /locus_tag="VKJ77_26255"
                     /EC_number="3.5.4.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008920754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxoguanine deaminase"
                     /protein_id="HMC48843.1"
                     /translation="MQQKPRTLLVKNAHVLVTMDETRREIANGGLFIEDNRITQVGAT
                     SDLPQHADEVLDLSGHLVIPGLVNTHHHMYQSLTRAVPAAQNAELFGWLTSLYKIWAN
                     LTPEMIEVSTLTAMAELLLSGCTTSSDHLYIYPNGSRLDDSIASAQQIGMRFHAARGS
                     MSVGQKDGGLPPDSVVEKEDAILKDTQRLIETYNDEGRYAMLRVVVAPCSPFSVSREL
                     MRDSALLAREYGVSMHTHLAENVNDVKYSREKFGMSPAEYAEDLGWVGPDVWHAHCVQ
                     LDRAGIELFGRTGTGVAHCPCSNMRLASGIAPIRAMRDAGVTVGIGVDGSASNDGAQM
                     VAEVRQALLLQRVGFGPDAMSAREALEIATLGGAKVLGRDDIGALAPGMAADFVSFDL
                     SQHGFAGALHDPVAALVFCAPSQVSTSVIDGRVVVRHGQLTTVDLGPIVERHNRLAGQ
                     LIAMAN"
     gene            complement(1504..2436)
                     /locus_tag="VKJ77_26260"
     CDS             complement(1504..2436)
                     /locus_tag="VKJ77_26260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48844.1"
                     /translation="MSQQREAIDTYLLRVLHTLLMERSVTRAAVKLNQSQPAISAALR
                     RLRDITGDPLLVRGKAGMVPTEYGLRLLEPTQNALREIERIKVQQHNFEPSTSVRCYR
                     IGCPDYLNVLFVPTVVERFRIAAPNATLEFHSLGPAFDYELALEEGKLDIVVGNWPEP
                     PEQLHLSNLFVDKIVCLVSSNHPFARRGALTLDQYLNAPHLAPTPYSVGQRGAIDVHL
                     ARERLKRHVVVTLPYFNLAPYVLIKSDLVFTTTRLFADHYAKFLPLTVVPAPLDFPPM
                     QYYQLWHERCHYSDEVRWLRHLVADATRSLIEAP"
     gene            2706..>2930
                     /locus_tag="VKJ77_26265"
     CDS             2706..>2930
                     /locus_tag="VKJ77_26265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48845.1"
                     /translation="MGDAISSSLPPGGALTSRLALHGISKQYPAVKANDDVTLIVEPG
                     EIHAVLGENGAGKSTLMKIIYGAVRPDEGEI"
BASE COUNT          577 a          816 c          960 g          577 t
ORIGIN      
        1 gctgggcatc ccgaagacgg cgatcgacgc tgggtaaccg ggtaacaggc gcggattcaa
       61 gcggtgcttt tatgcttttg cgccctcggt aaaacagtga aatagcggag atcggcatgc
      121 aacagaaacc ccggacattg ctggtgaaga atgcgcacgt gctcgtgacc atggacgaga
      181 cgcgacgcga gatcgccaac ggcggtttat tcatcgaaga caaccggatc acgcaggtgg
      241 gcgcgaccag cgacttgccg caacacgcgg acgaggtgct ggacctgtca ggccatctgg
      301 tcattcccgg cctggtcaat acgcatcacc acatgtacca gagcctcacg cgggctgttc
      361 cggccgcgca gaacgccgag ttgttcggct ggctcaccag cctctacaaa atctgggcga
      421 acctgacgcc tgagatgatc gaggtatcga cgctaaccgc catggccgaa ttgctgctgt
      481 cgggctgcac gacgtcgagc gaccatctct acatttatcc gaatggttcg aggctggatg
      541 acagcatcgc gtcggcgcaa cagatcggca tgcgttttca cgcggcgcgc ggcagcatga
      601 gtgtcgggca gaaggacggc ggtttgccgc ccgattcagt ggtcgagaaa gaggacgcga
      661 tcctgaagga tacgcagcgc ctgatcgaaa cgtataacga tgaaggccgt tacgcgatgc
      721 tgcgcgtggt cgtggctcct tgctcgccgt tctcggtcag ccgtgagctg atgcgcgatt
      781 cggcgttgct cgcgcgggaa tacggggtat cgatgcacac gcatctggcc gagaacgtga
      841 acgatgtcaa gtacagccgc gagaagttcg gcatgtcgcc ggcagagtat gcggaggatt
      901 taggctgggt cggaccggat gtctggcatg cgcattgtgt gcagctggac cgtgcgggta
      961 tcgagttgtt cgggcgcacg ggcacgggtg tcgctcattg tccgtgttcg aacatgcggc
     1021 tggcgtcggg cattgcaccc atccgggcaa tgcgagacgc aggcgtcacg gtcggaatag
     1081 gcgtggacgg atcggcatcg aacgatggcg cgcagatggt cgcagaagtg cggcaagcgt
     1141 tgttattgca gcgcgtgggt ttcggtcccg atgccatgag cgcacgggaa gcgctcgaaa
     1201 tcgcgacgct gggcggcgcg aaggtgctgg gtcgggatga tatcggcgcg ctggcccccg
     1261 gcatggcagc cgatttcgtt tccttcgatc tgagccagca cggctttgcc ggcgcgctgc
     1321 acgatcccgt cgcggcgctg gtgttctgcg caccgtcaca ggtatcgacg agtgttatcg
     1381 acggtcgcgt cgtggtacgc cacggtcaat tgacgacggt cgatcttgga ccgatcgtcg
     1441 agcgtcacaa ccgcctggcg ggccagttga tcgccatggc caactaggct aaggcgctta
     1501 agttcaaggc gcttcgatca gcgagcgcgt ggcatctgcg acgaggtggc ggagccaccg
     1561 cacttcgtcg gagtagtggc agcgctcatg ccacagttgg tagtactgca tcggcgggaa
     1621 atcgagcggc gcaggcacca cggtcagcgg caagaacttg gcgtagtgat cggcgaacag
     1681 tcgcgtggtg gtgaacacga gatccgactt gatcagcacg tacggcgcga gattgaagta
     1741 gggcagcgta acgaccacat gtcgcttgag gcgctcgcgc gccagatgca catcaatcgc
     1801 gccgcgctgg cctacggaat acggcgtagg cgcgaggtgt ggcgcgttga ggtattggtc
     1861 gagcgtgagt gcgccgcggc gagcaaacgg atgattggaa ctgacgagac aaacgatctt
     1921 gtcgacgaaa agattcgaga gatgcagttg ttcaggcggt tcgggccagt tgcccaccac
     1981 gatatcgagc ttgccttcct ccagcgcgag ttcgtagtcg aaagcggggc cgagcgagtg
     2041 aaattcgagc gtggcgttgg gcgcggcaat acgaaagcgc tccacaacgg tcggcacgaa
     2101 cagcacgttc agataatccg ggcagccaat gcggtaacag cgcacggaag tagacggttc
     2161 gaagttgtgc tgctgaacct tgatgcgttc gatttcgcgc agcgcgtttt gcgtgggttc
     2221 gagcaggcgc aggccgtact cggtcggcac catgcctgct ttgccgcgca cgagcagcgg
     2281 atcgccggtg atgtcgcgca ggcgcctgag cgccgcgctg atcgcgggtt gtgactgatt
     2341 gagcttgacg gccgcgcgcg tgacgctgcg ctccatcaag agggtgtgaa ggacgcgtaa
     2401 caggtaagtg tcgatcgctt cgcgttgctg actcatcttc tctccaatat acggtcaggc
     2461 tgatcgacca gggtgcagaa catatcgttt ttaatatgac acattgtttc cgtcaagctg
     2521 ggcatacccg caagcacact cgttgcacgc tgtgcaacac cgtgctgttg ctaattgcgc
     2581 gcactatttt gagtaatcga cggcccgcac cgttttgggt atcttttact cgcagactgc
     2641 aagtttccgt tgcccacatg ccggtcatcc cggttttgcg cgctttccgc actttctgag
     2701 tccatatggg cgacgccatt tcctcatccc ttccgccggg cggtgcgctt acatcgcgcc
     2761 tcgcgcttca cggcatcagc aaacaatatc ccgccgtcaa ggccaatgac gacgtgacgc
     2821 tcatcgtcga accgggtgaa atccacgccg tgctcggcga gaacggcgcg ggcaagtcca
     2881 cgctgatgaa gatcatctac ggcgcggtgc gtccggacga aggcgagatt
//
LOCUS       DATGBK010001864         3284 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_346258, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001864 DATGBK010000000
VERSION     DATGBK010001864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3284
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346258"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..966
                     /locus_tag="VKJ77_26270"
     CDS             <1..966
                     /locus_tag="VKJ77_26270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006495033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HMC48846.1"
                     /translation="HEAQPIIADTTPPILRVRDLVTRFPVRTGLFGRVTGRVHAVERV
                     SFDLRPGETLALVGESGCGKSTTGRSLLRLVESQSGSIEFDGNEISSLTGPALQALRR
                     DIQFIFQDPFASLNPRLTVGFSIMEPLLVHRVSQGAEAQARVAWLLDKVGLPAEAARR
                     YPHEFSGGQRQRIAIARALALNPKVVIADESVSALDVSVQAQIVNLMLDLQRELGVAY
                     LFISHDMAVVERVSHRVAVMYLGQIVEIGPRRAVFEGPRHAYTKKLMGAVPVADPERR
                     HAKRVLAVDEMPSPIRALDDEPVFAPLVMVGPDHFVAEHRIGGAY"
     gene            1056..2618
                     /gene="gsiB"
                     /locus_tag="VKJ77_26275"
     CDS             1056..2618
                     /gene="gsiB"
                     /locus_tag="VKJ77_26275"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013090272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0034634 - glutathione transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034775 - glutathione transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter substrate-binding
                     protein GsiB"
                     /protein_id="HMC48847.1"
                     /translation="MNSLVLSSPFRLRALLAGGAVVFAMLASGSVYAEQTAVMAVAST
                     FTSLDPYDANDTLSQAAAKSFYQGLFGFDKGMLLVNVLATSYEASPDARIYTIKLRQG
                     VKFQDGTDFNAAAVKANFDRVTDPANKLKRYNLFNRIEKTEAVDTYTVKITLKTPFSA
                     FINVLAHPSAVMISPAAMTKWGKDIGFHPVGTGPFEFVKWDPAGDLTAKKFAGYWKTG
                     YPKIDAIDWKPVVDNNTRSALMRTGEADFAFQVPYEQAAMLKADPKVDVFAGPSIIVR
                     YISLNMTKKPFDNPKVREALNYAVNKDALTKVAFSGYATPADGVVPQGVDYAAKTGPW
                     PYDPAKARALLKEAGYPDGFESTLWSAYNNSTSQKVIQFVQQQLAQVGVKVQVEALEA
                     GQRVAKVESAPDPASAPVRMYYAGWSSSTGEADWAISPLLASTSMPPKLTNTAYYKND
                     TVDADLSKALETPDRAQKTALYTDAQKRIWADAPWIFLVQENVLYARSKRLSGAYVAP
                     DGSFNFDEIAIK"
     gene            2736..>3284
                     /locus_tag="VKJ77_26280"
     CDS             2736..>3284
                     /locus_tag="VKJ77_26280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006765761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC48848.1"
                     /translation="MLNFLVKRLMGLLPTLFIVAVLVFLFVHLLPGDPARLAAGPEAD
                     DATVALVRSDLGLDKPMPQQFVHFFWRIAHGDFGISTRSKRPVSAEIGERFMPTLLLT
                     LVSMVWAVIFGMAVGITSAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMEIFSVKLG
                     WLPVVGDGSWKSYVLPSLTLGAA"
BASE COUNT          597 a          990 c         1022 g          675 t
ORIGIN      
        1 cacgaagcgc agccgattat tgccgacacc acgccgccga tccttcgcgt gcgtgatctg
       61 gtcacgcgct tcccggtcag gaccggtctg ttcggccgcg tgacgggccg cgtgcatgcc
      121 gttgaacgcg tgagcttcga cttgcgtccc ggcgaaacgc ttgcgctagt cggtgaatcg
      181 ggctgcggca aatccaccac gggccgctcg ctgctgcgac tcgttgaaag ccagagcggt
      241 tcgatcgagt tcgacggcaa cgagatcagt tcgctgaccg gacccgcgtt gcaggcattg
      301 cgccgcgaca tccagtttat tttccaggac ccgtttgcgt ccttgaatcc gcgcctgacg
      361 gtcggcttct cgatcatgga accgctgctg gtgcaccgcg tatcgcaagg tgccgaggcg
      421 caggcgcggg ttgcatggct gcttgacaag gtgggtctgc cggccgaagc ggcacgccgt
      481 tatccgcacg agttttctgg tggacaacgc cagcgcatag ccattgcccg tgcactcgca
      541 ttgaatccga aagtggtgat cgccgatgaa tccgtgtcgg cgctcgatgt gtccgtgcag
      601 gcgcagatcg tgaacctgat gctcgatctg caacgtgaac tcggcgtggc ttacttgttc
      661 atttcgcatg acatggcggt ggttgagcga gtcagccatc gcgtggcggt gatgtatctc
      721 gggcagatcg tggagatcgg cccgcgtcgc gcggtgttcg aaggaccgcg gcatgcctac
      781 acgaaaaaac tcatgggcgc ggtgccggtt gccgacccgg agcggcgtca cgcgaagcgc
      841 gtgcttgccg tcgatgaaat gccaagcccg attcgcgcgc tcgacgacga gccggtcttc
      901 gccccgcttg tcatggtcgg tcctgaccat tttgttgccg agcatcggat tggcggtgcg
      961 tactgatcgc ttctgatcac tcaacgcgcc agacgttttt tcatcgtgac tttgcttccc
     1021 tgttttcatt accaagctgc ctggagccca cccctatgaa ctcgcttgtc ctgtcttctc
     1081 cgtttcgttt gcgtgcgctg ctggccggcg gcgcggtagt tttcgccatg ctcgcgagcg
     1141 gatcggtgta cgccgaacag accgccgtga tggccgttgc atcgaccttt acgagccttg
     1201 atccgtacga cgccaacgac acgctttcgc aagccgccgc gaagtcgttc tatcaaggcc
     1261 tgttcggttt cgacaagggc atgttgctcg tcaacgtgct ggcaaccagc tacgaagcca
     1321 gtcccgatgc gcgcatctac acaatcaagc tgcgccaagg cgtcaagttc caggatggca
     1381 ccgacttcaa cgctgcggcg gtgaaggcca acttcgaccg ggtgaccgat ccggcgaaca
     1441 agctcaagcg ctacaacctg ttcaaccgca tcgagaaaac cgaggccgtc gacacgtaca
     1501 cggtcaagat caccctcaag acgccgtttt cggcgttcat caacgtgctc gcgcatccgt
     1561 cggcggtgat gatctcgccg gctgccatga cgaagtgggg caaggacatc ggctttcatc
     1621 cggtcggcac gggtccgttc gaattcgtga agtgggaccc ggccggagac ctgacggcga
     1681 agaagttcgc cggctactgg aagacggggt atccgaagat cgatgcgatc gactggaagc
     1741 cggtcgtcga caacaacacg cgttccgcgc tgatgcgaac cggcgaagcc gacttcgcct
     1801 ttcaggtgcc ctacgaacag gctgccatgc tcaaggcaga ccctaaggtc gacgtgttcg
     1861 cgggaccgtc gatcatcgtg cggtatatca gcctgaacat gacgaagaag ccattcgata
     1921 acccgaaggt gcgcgaagcg ctgaactatg cagtgaacaa ggatgccctc acgaaggtag
     1981 cgttctcagg ttacgccacg ccagccgacg gtgtcgtgcc ccagggcgtg gactacgcgg
     2041 cgaaaaccgg cccgtggccg tacgatcccg ccaaggcgcg cgccctgctg aaagaggctg
     2101 gttatccgga cggtttcgag tccaccctct ggtcggcgta taacaattcg acctcgcaaa
     2161 aggtcattca attcgtgcag cagcaactcg cacaggtcgg cgtgaaggtg caagtggaag
     2221 cgctcgaagc agggcagcgc gtggcaaagg ttgagagcgc accggacccg gcaagcgcgc
     2281 ccgtgaggat gtattacgcc ggctggtcgt cgtcgaccgg tgaagccgac tgggcgatct
     2341 cgccgctgct ggcatccact tcaatgccgc cgaagctcac gaataccgct tactacaaga
     2401 acgataccgt cgacgccgat ctgtcgaagg cgctcgagac ccccgaccgc gcgcagaaaa
     2461 cggcgctgta cacggacgcg caaaagcgca tctgggccga cgcaccgtgg atcttcctgg
     2521 tccaggaaaa cgtgctctat gcgcgcagca aacgcctgtc gggtgcttac gtggcgccgg
     2581 acggttcgtt caacttcgac gagatcgcga tcaagtaggg ttgttcgcgt gggtccggcc
     2641 cgtcatgccg gactgctccg tattctcttt tgctgttgtg cgctgtagcc gggaacatcc
     2701 ggccacagtg gctgcatcac agccgggtcg ccttcatgct gaactttctc gtcaaacgtc
     2761 tcatgggctt gctgccgacg ctttttatcg tcgcggtgct ggtgttcctg ttcgtgcacc
     2821 tgttgccggg ggaccccgcg cgtcttgcgg ccggtcccga agcagacgac gccaccgttg
     2881 cccttgtacg cagcgatctt ggtctcgaca agccgatgcc acagcaattc gtgcactttt
     2941 tttggcggat cgcacatggc gatttcggta tctcgacgcg cagcaagcgg cccgtcagcg
     3001 cggagatcgg cgagcgcttc atgccgacct tgctgctgac gctggtgagc atggtgtggg
     3061 cagtaatctt cggaatggcg gtggggataa cgtcggcggt gtggcgtaat cgatggcctg
     3121 accgcctcgg catgaccttg gcggtatcgg gaatctcatt ccccgcgttc gcgctcggca
     3181 tgttgttgat ggagatcttc tcggtgaagc tgggctggct gccggttgtc ggagacggtt
     3241 catggaagag ctacgtgctg ccttcgctga cgcttggggc agcg
//
LOCUS       DATGBK010001865         1512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_69225, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001865 DATGBK010000000
VERSION     DATGBK010001865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69225"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(129..467)
                     /locus_tag="VKJ77_26285"
     CDS             complement(129..467)
                     /locus_tag="VKJ77_26285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HMC48849.1"
                     /translation="MKRSILALSLLFAAAITASAFAAPLKKAPPSKVSIALPGDLDFA
                     FKKAPGVDIVQTNCLGCHSSAYVSTQPKLTQAQWTAEVTKMKAAYGASISDADSTKIV
                     EYLTANYGKP"
     gene            complement(464..>1512)
                     /locus_tag="VKJ77_26290"
     CDS             complement(464..>1512)
                     /locus_tag="VKJ77_26290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017334444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HMC48850.1"
                     /translation="LTPRPVQLETPFSVFDKGAFTPNDAFFVRWHLSDVPTSVDAAAH
                     RIYVMGTVGRRLTLSVDDLRHTFEPVEIAAVNQCSGNSRGLFDPRVAGGQWTNGAMGN
                     ARWKGVRLRDILDRAGINAGTKQIRFAGLEKGAFKETPLFVKALDVEVARNPDVIVAY
                     EMNGEPLPLLNGYPVRLVVPGWYSTYWMKMLSRIEAIDHVEDNFWMKTAYRIPDTPNN
                     SVAPSDKGYATIPINRMKVRSFVTSFAGGAHLIAGPQTVRGIAFDGGSGIAKVDYSLD
                     GGTTWMPATLGKDYGKYSFRQWSAPFRPRTGVQYTVACRATAVDGATQTNVPTWMAPG
                     YQRNIIETYAVTAG"
BASE COUNT          304 a          440 c          450 g          318 t
ORIGIN      
        1 gatttcgtaa tcggtaacca cggtgatcct tctatggacg cctggcacga aggccggcgg
       61 cccacctgga cgggcgggca gtaggaggcg aacgcgataa agctctttaa ccgcattttg
      121 taggcggttt agggcttgcc gtagttcgcg gttaagtact cgacgatttt cgtggaatcc
      181 gcatccgaga tggaggcgcc gtaggcagcc ttcatcttcg tgacttccgc cgtccactga
      241 gcttgcgtca gtttcggttg agtcgaaaca tacgcggacg aatgacagcc cagacagttg
      301 gtttgtacga tgtcgacgcc cggcgccttt ttaaatgcga aatcgagatc gcccggcaac
      361 gcgatcgaaa ctttgcttgg cggtgccttc ttgagcggtg cggcaaacgc gctcgcggtg
      421 atggcggcgg caaaaagcaa actcagcgcg agaatcgagc gtttcatcct gcggtcaccg
      481 cgtacgtttc gatgatgttg cgctgatagc ccggcgccat ccaggtggga acgttcgtct
      541 gcgtcgcacc gtcaacggcg gtggctcgac acgcaaccgt gtactgcacg ccggtgcgcg
      601 gccgaaacgg cgccgaccac tgccgaaagc tatattttcc gtagtccttg ccaagcgttg
      661 cgggcatcca cgttgtccct ccgtcaagcg aatagtcgac tttcgcaata cccgaaccgc
      721 cgtcgaatgc gatgccgcgc acggtctgcg gaccggcaat cagatgcgca ccgccggcaa
      781 agctcgtgac aaacgagcgc accttcatgc gattgatcgg gatcgtcgcg tagcctttgt
      841 cgctgggcgc gaccgaattg ttcggcgtat ccggaatccg gtacgccgtc ttcatccaga
      901 agttatcttc gacgtggtcg atggcctcaa tacgcgaaag catcttcatc cagtacgtcg
      961 agtaccaacc aggcacgacg agtcgcaccg gatagccgtt gagcagcggc agcggttcgc
     1021 cgttcatttc atacgcgacg ataacatcgg gattgcgcgc aacctcaacg tcgagcgctt
     1081 tgacgaacag cggcgtttct ttgaatgcgc ccttttcgag gccggcaaag cgaatctgtt
     1141 tggtacccgc gttgatgcct gcgcggtcga ggatgtcgcg taagcgcacg cctttccagc
     1201 gtgcgtttcc catcgcgccg ttcgtccatt gtccgcccgc gacgcgtgga tcgaacaatc
     1261 cgcggctgtt gcccgaacat tggttaaccg cggcgatttc tacgggttcg aatgtatgcc
     1321 ggagatcgtc gaccgaaagc gtcagccggc gtccgaccgt gcccatgaca tagatgcgat
     1381 gcgctgccgc atcgaccgat gtcggcacgt cggacagatg ccagcgaacg aaaaaggcgt
     1441 cgttcggagt gaacgcgcct ttatcaaata cggaaaatgg cgtttccaat tggaccggcc
     1501 gtggcgtaag aa
//
LOCUS       DATGBK010001866         1595 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_253483, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001866 DATGBK010000000
VERSION     DATGBK010001866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253483"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(255..1490)
                     /locus_tag="VKJ77_26295"
     CDS             complement(255..1490)
                     /locus_tag="VKJ77_26295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013214745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS701 family transposase"
                     /protein_id="HMC48851.1"
                     /translation="MIRRSWTRAASIEETLALWAASLREIKKRIRPLFGQERVAKNAG
                     LFLEGLLGDEQRKTGWMRAEAAGDPGPWRQQAILGRMDWDADALRDIVRDYVIEHLAD
                     DDAVLVIDETGFLKQGKASCGVARQYTGSAGKITNCQIGVFAAYVSHHGHAFIDRALY
                     LPKEWTDDPDRLEAASVPADIGFATKPKLATGMIARSIAASVPFRWVAGDTVYGVGDI
                     EQQLRRAGKGYVLGVSSAHVFQSWGKRQPVAGKAADIARTRRSCDWKRLSAGAGTKGP
                     RLHDWCYLELADLELEEFNSANQGLWTRGLLIRRHIADGDLAFFTTWCPTATSIETLV
                     AIEGHRWAIEDSFETAKNEFGLDHNESRSWHGWHRHVSLVMLAFAMMAAIRHRANPPP
                     SKKTKRRITAKTKASPRRH"
BASE COUNT          310 a          494 c          464 g          327 t
ORIGIN      
        1 ttcacccgct ttcatccgct ccaccagccc gttgccggac ggacccacat agttgggccg
       61 ggcggtgtct cctagggccc ccggaggacc ggctgactag cattacagtt gccttcttgc
      121 attgaagtgg gcgcgctgag ctgcggcttg gtgagctcta cgccagagtg accatgcgat
      181 gatgttcgcg ggtcggatcc gctttcgagc gagtctgatg gcgatgcggc ggacttcttg
      241 gatagaccag cggatcaatg acggcgtggc gatgctttgg tttttgccgt gattcggcgt
      301 ttcgtttttt ttgacggcgg cggattagcg cgatggcgga tcgccgccat catggcaaag
      361 gcgagcatca ccagggaaac gtggcgatgc cacccatgcc aggatctgct ctcgttgtga
      421 tcgagcccga attcgttttt cgcggtctcg aaactgtcct cgatcgccca ccgatggcct
      481 tcgatcgcca ccagcgtttc gatggatgtt gccgttggac accaggtagt gaagaaggcg
      541 agatcgccat cggcgatatg acgacggatc agcagaccgc gggtccacag accttgattt
      601 gcgctgttga attcttcgag ctcgagatcg gccaattcga gataacacca gtcgtgcagc
      661 cgcggtcctt tggttccggc acctgccgac aggcgtttcc agtcgcacga gcgccgcgtc
      721 cgggcgatgt ccgcggcctt gccggcgacc ggctgccgct tgccccagga ttgaaacaca
      781 tgagcgctgc tgaccccgag tacatagcct ttgcctgctc gacgcagttg ctgctcgata
      841 tcgccgacac cgtagacggt atcaccggca acccatctga atggtacaga cgcggctatc
      901 gagcgtgcga tcattcccgt cgcaagcttt ggtttggtcg caaagccaat atcggcaggc
      961 acggatgcgg cttccaggcg atctggatcg tcggtccatt ccttcggaag atacagcgcg
     1021 cgatcgatga acgcatgacc gtggtgcgaa acgtaggccg cgaagacgcc gatctggcag
     1081 ttcgtgatct tgccggcgga accagtatat tgccgcgcca ctccgcacga cgccttgccc
     1141 tgcttgagaa agccggtctc gtcgatcacg agaaccgcat cgtcatccgc caaatgctcg
     1201 atgacataat cgcgtacgat atcgcgcagg gcatcggcat cccaatccat gcgacccagg
     1261 atcgcctgct gccgccatgg gccgggatcg ccagctgcct cagcgcgcat ccaaccggtc
     1321 ttgcgttgct catctccgag cagaccttcc agaaacaagc ctgcattctt cgcaacacgc
     1381 tcttgcccga acagcggacg tatccgcttc ttgatctccc gaagcgacgc cgcccacaac
     1441 gcaagcgtct cctcaatcga cgctgcccgc gtccacgatc ttcgaatcat ggttgcccat
     1501 ggattcagaa agccccacaa aaggcaactg taatgctagg gccgcgccac cagcggcaag
     1561 ggttgcggca gcggaaagaa atcgacggcg agatg
//
LOCUS       DATGBK010001867         1855 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_91424, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001867 DATGBK010000000
VERSION     DATGBK010001867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1855
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91424"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1596
                     /gene="dnaK"
                     /locus_tag="VKJ77_26300"
     CDS             <1..1596
                     /gene="dnaK"
                     /locus_tag="VKJ77_26300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012431797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HMC48852.1"
                     /translation="KTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRI
                     INEPTAAALAFGLDKNEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDT
                     FLGGEDFDQRIIEYIIGEFKKDQGVDLSRDVLALQRLKEAAEKAKIELSSTAQTEINL
                     PYITADASGPKHLNLKITRAKLESLVEDLIERTMEPCRIAIKDAGVKVGEIDDIILVG
                     GMTRMPKVQEKVKEFFGKDPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDMTPLSL
                     GIETLGGVMTKMINKNTTIPTKHAQVYSTADDNQSAVTIKVFQGEREMAAGNKLLGEF
                     NLEGIPPASRGTPQIEVSFDIDANGILHVGAKDKATGKENRIVIKANSGLSDAEIDKM
                     VKDAEANADEDHRLRELADSRNQGDALVHSTKKAVAEYGDKIEAAEKEQIEAALKDLE
                     EALKGSTADKAAIDAKIETLATASQKLGEKMYADMAAAQGAAGAAAGGANSAGAAGGP
                     GAQAAPEQHDDVVDADFKEVKKD"
BASE COUNT          445 a          473 c          621 g          316 t
ORIGIN      
        1 aagaccgctg aagactatct cggcgaagaa gtgacggaag ccgtcattac ggttccggcc
       61 tactttaacg acagccagcg tcaggctacg aaagacgcgg gccgtatcgc cggtctggac
      121 gttaagcgca tcatcaacga accgaccgca gccgcgctcg cgttcggtct ggacaagaac
      181 gaaaagggcg accgcaagat tgcggtgtac gacttgggcg gcggcacgtt cgacgtatcg
      241 atcatcgaga tcgcggacgt tgacggtgag aagcagttcg aagtgctctc cacgaacggc
      301 gacacgttcc tcggcggtga agattttgac cagcgcatca tcgaatacat catcggcgag
      361 ttcaagaagg atcaaggcgt cgatctgagc cgcgatgtgc tcgcgctgca acgcctgaag
      421 gaagccgctg aaaaggcgaa gatcgagttg tcgtcgaccg ctcagaccga aatcaacctg
      481 ccgtacatca cggcggacgc gtcgggtccg aagcacttga acctgaaaat tacgcgtgcg
      541 aagctggagt cgctggttga agacctgatc gaacgcacga tggaaccgtg ccgtatcgct
      601 attaaagatg caggcgtgaa ggtcggcgaa atcgacgaca tcatcctggt cggcggcatg
      661 acgcgtatgc cgaaggtgca ggaaaaggtt aaggaattct tcggcaagga cccgcgtcgt
      721 gacgtgaatc cggacgaagc cgtggcggtg ggcgctgcga ttcagggcca ggtgttgtcg
      781 ggtgatcgga aagacgtgtt gttgctggac atgacgccgt tgtcgctggg tattgaaacc
      841 ctcggcggcg tgatgacgaa gatgatcaac aagaacacga ccatcccgac caagcacgca
      901 caggtgtatt cgacggctga tgacaatcag agcgccgtga cgatcaaggt gttccagggc
      961 gagcgcgaaa tggcagcggg caacaagctg ctgggcgagt tcaaccttga aggcattccg
     1021 ccggcatcgc gcggcacgcc gcagatcgaa gtgagctttg acatcgacgc gaacgggatt
     1081 ttgcacgtcg gcgcgaaaga taaggctacg ggcaaggaaa accgcatcgt catcaaggcg
     1141 aactcgggcc tgtcggacgc tgagatcgac aagatggtga aggacgccga agcgaacgcc
     1201 gacgaagatc accgtctgcg tgaactggcc gactcgcgca atcagggcga cgcgctggtg
     1261 cacagcacga agaaggccgt ggctgaatac ggcgacaaga tcgaagcggc tgaaaaagag
     1321 cagatcgaag cggcgttgaa ggatcttgaa gaagcgctga agggcagcac ggctgacaag
     1381 gctgcgattg acgcgaagat cgaaacgctg gcaacggcgt cgcagaaact cggcgaaaag
     1441 atgtacgccg acatggctgc ggcgcaaggt gcggcgggcg cggcagcggg tggggcgaat
     1501 tcggcgggcg cagcaggcgg ccccggtgcg caagcggcgc cggagcagca cgacgatgtt
     1561 gtcgatgccg acttcaagga agtgaagaag gactaagtcg attgaaccgc atcagcgatt
     1621 cgtcgatgaa ggacccggtc ccgtgcggct tcggctttgc gcgggatcgc gacgaaaaat
     1681 gtcttgcgcg cagttaagcg tacggacgaa gaacgcgcct ggcgagccga ttggctttcc
     1741 gggcacgttg tttttttaga gggcgctgtg ctttgtgcgg gttgatttgc gtgctgatca
     1801 cttgttgatc gcgcgaatca tgcatgtagg cgaggcgtcg acgaaccaca tgagt
//
LOCUS       DATGBK010001868         1861 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_184106, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001868 DATGBK010000000
VERSION     DATGBK010001868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184106"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VKJ77_26305"
     CDS             complement(<1..215)
                     /locus_tag="VKJ77_26305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48853.1"
                     /translation="MTARIGAAAVLALVLVSAVGAAPQKKPAANAAANNGGLSTKDFR
                     IETNETQFNYGSGGFTMPHRVKFFRPGT"
     gene            complement(212..871)
                     /locus_tag="VKJ77_26310"
     CDS             complement(212..871)
                     /locus_tag="VKJ77_26310"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:NF013468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HMC48854.1"
                     /translation="MLPSARGNASLSEESALARIDAARTPGVRVADNVAGAVFAGKTI
                     VFPTDTVYGLGCDPKRLDAVARVRGVAGGDEPLVLHLGSVIEALEHCGGHIRNFAIVR
                     RLLPGAVTLIVERPSFIDPLVTAGLPSLGLRVPDHALSRDILERCGPLATTTARRNAQ
                     GTWSAGDVFIDNGPIRTLGESTVLDLTADRPRLVREGVMTLEMLEQMIGRIDPPQGSS
                     R"
     gene            complement(834..1814)
                     /locus_tag="VKJ77_26315"
     CDS             complement(834..1814)
                     /locus_tag="VKJ77_26315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004628293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HMC48855.1"
                     /translation="MDIGIDLGTANVLVYVKGKGIVLREPSVVAKDVRTNKTIAVGEE
                     ARLMLGKTPSNIQAIRPLRDGVIADFEVTEAMLHYFIKKVTRQRSWLSTLFRPKPSVV
                     ICVPAEITSVEERAVRDAAKLAGAKSVDIIEEPMAAAIGAGLPIDGPSGNMVVDIGGG
                     TTDVAVISLGGIVVSQSIRVAGNKLDEAIIRHIRRVYNLMIGERTAEEIKIKIGSAYR
                     LESELAMEIRGRDLINGLPKTVKITSEEVREALSEPVQAIVEAVKSVLEKTPPELAAD
                     IIDRGVILTGGGALLRGLDTLLGEVTGIPVIVAEDPMSCVAIGTGQRVAL"
BASE COUNT          385 a          572 c          518 g          386 t
ORIGIN      
        1 gtgcccggac gaaagaattt cacccggtgc ggcatcgtaa atccgcccga accgtagttg
       61 aattgcgtct cgttcgtttc gatgcggaaa tctttggtcg atagtccgcc gttatttgca
      121 gcggcattcg cggctggttt cttctggggc gcagcaccaa cggccgatac aagaacaagc
      181 gccaatacgg cggcggcgcc aatgcgtgct gtcatcgtga actgccctgt ggcgggtcga
      241 tccgcccgat catctgttcc aacatctcca acgtcatgac gccttcgcga accagtcgcg
      301 gccggtcggc cgtgaggtcg agtacggtcg attcgccgag cgtccgaatg ggaccgttat
      361 cgataaaaac gtcacccgca ctccacgtcc cttgcgcatt acgtcgcgcc gtcgtggtcg
      421 cgagcgggcc gcaacgttct aatatgtcgc gcgataacgc atgatcggga acgcgcagcc
      481 ccaagctcgg caagcctgcg gtcactaacg gatcgataaa cgatgggcgc tcgacgataa
      541 gtgtcacggc accaggcaat aaccggcgca cgatggcaaa gtttcggatg tgtccgccgc
      601 agtgctcgag cgcctcgatc acgctgccca ggtgcaagac cagtggctcg tctccaccgg
      661 caaccccgcg aacgcgtgcg acggcatcca ggcgcttggg atcgcagcct aagccgtaga
      721 cggtatccgt tggaaaaacg attgtttttc cggcaaatac ggcaccggca acattgtctg
      781 caacgcgtac gccgggcgta cgcgccgcat caatgcgcgc tagcgcggat tcttcagaga
      841 gcgacgcgtt gccccgtgcc gatggcaaca cacgacatcg gatcctcggc aacgatcacc
      901 ggaattccgg tgacttcacc aagcaacgtg tcgaggccgc gcaagagcgc gccgccgccg
      961 gtgaggatga ccccgcgatc gataatatcg gcggcaagtt ccggcggtgt tttttccagc
     1021 acggatttca cggcttcaac gatcgcttgc acgggctccg ataatgcttc acgcacttct
     1081 tcgcttgtga tcttcacggt cttcggcaat ccgttaatca aatcgcgacc gcgaatttcc
     1141 atcgcaagtt ccgattccaa gcggtatgcc gatccgatct tgatcttgat ttcttcggcc
     1201 gtgcgttcac cgatcatgag attgtaaacg cgccggatgt ggcgaatgat cgcttcatcg
     1261 agcttgttac cggcaacgcg aatcgattgt gatacgacga tgccaccaag tgaaatcacc
     1321 gcgacgtcgg tcgtaccgcc gccgatatcg acaaccatat ttcccgacgg cccatcgatc
     1381 ggaaggcccg cgccgatcgc tgcggccatc ggttcttcga tgatgtcgac agatttcgcg
     1441 ccggcaagtt tggccgcatc gcgaacggcg cgttcttcga ccgacgtgat ctcagccggg
     1501 acgcaaatca cgaccgacgg cttgggtcga aacagtgtgc tcagccacga gcgctgccgc
     1561 gttactttct tgatgaagta gtgcaacatg gcttcggtga cttcgaagtc tgcgatgacg
     1621 ccgtcgcgca aaggacggat cgcttgaatg ttactcggcg tcttgccgag catcaagcgc
     1681 gcttcttcac ctacggcgat cgtcttattc gtgcggacat cttttgcgac gaccgacggc
     1741 tcccgtaaca caatgccctt acccttgacg taaaccagta cgtttgcggt acccagatca
     1801 atcccgatat cgatgacgaa ctactcccca atcgcgcgtg cgaacaaagc ccagagggct
     1861 t
//
LOCUS       DATGBK010001869         2577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_207831, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001869 DATGBK010000000
VERSION     DATGBK010001869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207831"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..942)
                     /gene="ppk2"
                     /locus_tag="VKJ77_26320"
     CDS             complement(46..942)
                     /gene="ppk2"
                     /locus_tag="VKJ77_26320"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HMC48856.1"
                     /translation="MISQDKQRRFEEDLIDSYDEELEMEVDDRILDGEGAFSAEAREQ
                     RKIYFRELFRLQGELVKLQDWVVASGHRLVVIFEGRDAAGKGGAIKRITQRLNPRVCR
                     VAALPAPNNRERTQWYFQRYVSHLPAGGEIVLFDRSWYNRAGVERVMNFCTDAEYEEF
                     FRSVPEFEKMLVRSGVQILKYWFSITDDEQEVRFQARIEDPLKQWKLSPMDLESRRRW
                     EAYTHAKEVMLARSHIPEAPWWVVQAVDKKRARLNCIHHLLSQVPYHEIEHPTIELPD
                     RVYNDDYLRQPVPQSIIVPEIY"
     gene            1202..1774
                     /locus_tag="VKJ77_26325"
     CDS             1202..1774
                     /locus_tag="VKJ77_26325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014725763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2878 domain-containing protein"
                     /protein_id="HMC48857.1"
                     /translation="MQDSSIGTRRPSTVERWAPSVYFVIGQLGWFACVLSAARDVPWM
                     GVATTIVLVAMHLARVDRPLQEFKLLVSVLVVGAIWESVPVATGLLVYPNGTVLPGAA
                     PYWILALWALFAVQFNTTFGWLKQRMLLASVLGAIAGPMSFRAGAALGAVRLVLPLPA
                     TILLAIGWAFLMPVLILLSRRWDGVHVGVH"
     gene            1900..2235
                     /locus_tag="VKJ77_26330"
     CDS             1900..2235
                     /locus_tag="VKJ77_26330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008353089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48858.1"
                     /translation="MTSRNDFELRETGWRIHSDVATIAKQAWSDAIPVATPTAPSRTT
                     PPATYFISVLELATGEKLGNNERLRAIAILEAHFAAGRPRTLNEAIRICAGAIDSSTL
                     QRMARGAKA"
     gene            complement(2301..>2577)
                     /locus_tag="VKJ77_26335"
     CDS             complement(2301..>2577)
                     /locus_tag="VKJ77_26335"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HMC48859.1"
                     /translation="GLGAWLSEPGSAAHGGESLEALQTRVRGALESNREAGVTLVVTH
                     AIVVKTVLATVLDAPLTSIYCMDLEPLSTITLTLSGEAWRLRCKSSV"
BASE COUNT          484 a          768 c          755 g          570 t
ORIGIN      
        1 catgccgtgc atgacaagac ctgccactgc taacaacgtt atcagtcaat atatttccgg
       61 cacgataatg ctttgcggca cgggctgccg cagataatca tcgttataaa cgcggtcagg
      121 caattcgatt gtggggtgct cgatctcgtg atacggcacc tggctcagca gatgatgaat
      181 gcagttgagc cgcgcgcgtt tcttgtccac ggcttgcacg acccaccacg gtgcttcggg
      241 aatatgcgag cgcgccagca tcacttcctt cgcgtgcgta tacgcttccc agcgacgacg
      301 gctttccaga tccatcggac tcagcttcca ctgtttcaac ggatcttcaa tacgtgcctg
      361 gaagcggact tcctgttcgt cgtcggtgat cgagaaccag tacttcagga tctgcacgcc
      421 gctgcgcacc agcatctttt cgaattccgg cactgagcga aagaactctt cgtactcggc
      481 gtcggtacag aaattcatca cgcgttccac gcccgcccgg ttgtaccagc tgcggtcgaa
      541 cagcacgatc tcgccgcctg ccggcagatg cgacacgtag cgctggaaat accactgggt
      601 gcgttcgcga ttgttcggtg cgggcaaggc ggcgacccgg caaacgcgcg gattcagccg
      661 ctgcgtaatg cgcttgatcg cgccgccctt gccggcggcg tcgcgtcctt caaagatcac
      721 cacgagccga tggccgctgg cgacaaccca gtcctgcagt ttgacgagtt cgccttgcag
      781 gcggaacagc tcgcgaaaat agatcttgcg ctgctcgcgc gcttcggcgg aaaacgcccc
      841 ttctccgtcg agaatgcggt cgtcgacttc catctcgagt tcttcgtcgt agctgtcgat
      901 caggtcttct tcgaagcggc gctgtttatc ctgcgaaatc atgggaagct ccgtttggtt
      961 ggcgtgttga ccgcgttgtc tcgtcccggc aggcaataca aaacccggca atcctgcaaa
     1021 ttatcgatta tcaggcccga taatttcagg aatgttacgg cgggcgtgtc aagagccaag
     1081 gcaatggtta gatgaatgat ccgcctatcc gagagccgca tgcgcgaacg ggcggctgcg
     1141 atatgcgata gcgtcattac actttgcaca ctttgcccgg aaaccggaaa ctggaaaccg
     1201 catgcaggac tcatccattg gcacacggcg cccatcaacg gtcgaacgct gggcgccgtc
     1261 cgtctatttc gtgatcgggc agctcggctg gtttgcctgt gtgctgagcg ccgcacgcga
     1321 cgtgccatgg atgggcgtag cgacaaccat tgttctcgtc gccatgcatt tggcgcgcgt
     1381 tgaccgtccg ttgcaggagt tcaagctgct ggtcagcgtg ttggtggtgg gcgcgatctg
     1441 ggagagcgtg ccggttgcga ccgggttgct cgtgtatccg aacggcaccg tgttgccggg
     1501 cgccgcacct tattggatcc tcgcgttgtg ggcgctgttc gcggtccagt tcaacaccac
     1561 attcggctgg ctcaagcaac gcatgctgct tgcttcggtg ctcggcgcca ttgccgggcc
     1621 gatgtcgttt cgcgccggtg cagcgctcgg cgcggtgcgc ctggtgcttc cattgcccgc
     1681 tacaatcttg ctggctatcg gctgggcgtt cctgatgccg gtgctgatcc tgctctcgcg
     1741 gcggtgggac ggggttcacg tcggggtgca ctaattccgg ctgaggggtc gtccgagcga
     1801 cgctcgaagc aggttaagaa aaacgcccgc gtattcaagc tggaatagtc cttgctaact
     1861 atgccagggt gatccgagga ttatttcagg gcttgattga tgactagtcg aaacgatttt
     1921 gaattgagag aaacgggttg gcgcattcat tccgatgtag cgaccattgc aaagcaagca
     1981 tggtccgatg ccattcccgt agccacgcca acggcgcctt cccgcactac accaccggcg
     2041 acctacttta tatcggtgct cgaactggct accggcgaga agcttggcaa caacgagcgg
     2101 cttcgcgcca tcgcgattct tgaagcgcat ttcgcggcgg gccgaccccg cacgctgaac
     2161 gaagcgatca ggatttgcgc gggcgcaatc gattcttcga cgctccagcg gatggcgcgc
     2221 ggcgcgaaag cctgacttgc ttgagcgtgc gcggcactac ttcggttttt ccagcttctg
     2281 gcaagaacac cgtgttttca tcatacggaa gacttgcatc gaaggcgcca cgcttcgccc
     2341 gatagggtta gcgtgattgt cgaaagcggt tccaggtcca tgcaataaat ggacgtaagc
     2401 ggggcgtcca gcacggtcgc cagcacggtc ttgaccacta ttgcatgcgt cacgaccagt
     2461 gtgaccccag cctctcgatt gctctccagc gcgccgcgaa cccttgtttg aagggcttcc
     2521 aggctctcgc ctccatgcgc cgcgcttccc ggttcggaaa gccatgcgcc caaccca
//
LOCUS       DATGBK010001870         2797 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_299992, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001870 DATGBK010000000
VERSION     DATGBK010001870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299992"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..681)
                     /locus_tag="VKJ77_26340"
     CDS             complement(<1..681)
                     /locus_tag="VKJ77_26340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HMC48860.1"
                     /translation="MRIDRRLLSHAFGGLFWRTFALIALLIAVSIAAWFQSFRVIERE
                     PRAQRVALQLVAVVKLTRTALLYSDPDLRRALLQDLESNEGVRVYPRETTDKYRLQPD
                     ESLNRLIEHDVRGRLGNDTVIAQSVNDIPGVWISFKIDDDDYWVALDRDQLDNVTGLQ
                     WAGWGIFALALSLFGAAFITSLVNRPFARLALAARKVGSGQAPEPLPERGMGVAAETN
                     RSFNQMVQD"
     gene            complement(762..1487)
                     /gene="ompR"
                     /locus_tag="VKJ77_26345"
     CDS             complement(762..1487)
                     /gene="ompR"
                     /locus_tag="VKJ77_26345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007872524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HMC48861.1"
                     /translation="METKNPSKILVVDDDPRLRDLLRRYLGEQGFNVYVAENAPSMNK
                     LWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAKGEDVDRIVGLEMGAD
                     DYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETTEVFEFGEFALNLATRTLTKNGQ
                     EIPLTTGEFSVLKVFARHPRAPLSREKLMELARGREYEVFDRSLDVQISRLRKLIEPD
                     PSSPRFIQTVWGLGYVFIPDGAA"
     gene            1782..2222
                     /locus_tag="VKJ77_26350"
     CDS             1782..2222
                     /locus_tag="VKJ77_26350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48862.1"
                     /translation="MRTKRIIRLTLIASAFYAVFAARTALAQASQSSNRSSSAFDRPD
                     SSMSSSSSSSPSSRYSSPEGDSSDFNSQQPRKRFDGRFMRAQHRMQKPLNGNRDPQVI
                     PAMPAPQVDPQPPERPPRHGVMTADERRLLRQHIEEAVRDLYKR"
     gene            2452..>2797
                     /locus_tag="VKJ77_26355"
     CDS             2452..>2797
                     /locus_tag="VKJ77_26355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HMC48863.1"
                     /translation="MVTLVNALCLMLTSALTAQAAQNNTPRRVRTVHRTEAAAVDADP
                     LDATDARFLLTRTGFEANASEVAPYIGMSREQAVDALLAGARTEASIPAPAWATEPIP
                     SVEVRRAWTQDER"
BASE COUNT          557 a          854 c          837 g          549 t
ORIGIN      
        1 gtcttgcacc atctggttga aactgcgatt ggtttcggcg gccacgccca tgccgcgctc
       61 gggcaacggt tcgggcgcct gccccgagcc gaccttgcgt gcggccagcg ccagccgcgc
      121 gaatggccgg ttgacgaggc tggtaatgaa cgccgccccg aacaacgaca gcgcgagcgc
      181 aaaaatgccc cagccggccc attgcaggcc ggtgacatta tcgagttgat cgcgatcgag
      241 cgccacccag taatcatcgt cgtcgatctt gaagctgatc cacacgcccg ggatgtcatt
      301 gacggattgc gcgatcaccg tgtcgttgcc gagccggccc cgcacgtcgt gctcgatcaa
      361 ccggttcagc gactcgtcgg gctgcaggcg atatttatcg gtggtttcac gcgggtacac
      421 gcgcacgcct tcattgctct ccagatcctg cagcaaagcg cggcgcagat cgggatcgga
      481 ataaaggagg gcggtacgcg tgagcttgac gaccgcgacg agttgaagcg ccacgcgctg
      541 tgcgcgcggt tcgcgttcga tcacccggaa gctctggaac catgcggcga tgctgaccgc
      601 aatcagcaac gcgatcaagg cgaaggtccg ccagaacagg ccaccgaacg cgtgcgacag
      661 tagccgcctg tcaatccgca tggttcgctg atgctcttgc ttgtggcgcg cacggggcgc
      721 gtttgtcagg actcaatcag gactcagtca ggactcgcat ctcaggctgc gccgtcgggg
      781 atgaagacgt aaccgaggcc ccacaccgtc tggataaaac gcgggctgct cgggtccggc
      841 tcgatcagct tgcgcaacct tgagatctgc acatcgagac tgcggtcgaa aacttcgtat
      901 tcacggccgc gcgccagttc catcagcttt tcacgcgaca gcggcgcacg cggatgtcgt
      961 gcaaacactt taagcaccga gaattcgccg gtggtcagcg ggatttcctg gccgttcttg
     1021 gtcagcgtac gcgtggcgag attcaaagca aattcgccga attcgaagac ttcggtggtt
     1081 tcggacggcg cgcccggcag ttccgacggc gactggcgac gcagcaccgc gtgaatccgc
     1141 gcgacgagtt cgcgcgggtt gaacggcttt ggcaaatagt cgtccgcgcc catttccagg
     1201 cccacgatgc ggtcgacgtc ttcgcctttc gcggtgagca tgatgatggg cgtacggtcg
     1261 ttgctgcccc gtagacggcg gcagatcgac agtccgtctt cccccggcaa catcaggtcg
     1321 agcacgagca ggtcgaaacg ttcgcgaacc cagagcttgt tcatcgacgg cgcattttca
     1381 gcgacataga cattaaagcc ctgttcgccg agataacgtc gcaaaagatc gcgcaaacgg
     1441 ggatcgtcgt cgactacgag tatttttgag ggatttttgg tttccatgcc cgcatcttag
     1501 cgcgattaga aagagaggct agtttgctcc ttttctaagg taacagatag ttacaaaatt
     1561 tacggcgagt gtggcacgac ataaaggttc tatgcgtaca ctcctttacc taagcccgtc
     1621 attcggtgga tactccatta gtacaacgat tgcgcgtcag tatcatggcg gcactaaccg
     1681 tcaatactgg catgacacgc aagcacgcca aagagcctga gactgtccgg ttgtcgagca
     1741 acgaagggaa caacatgaag ggagcgcggc ggcgcatacc tgtgcgcacc aagcgcatca
     1801 ttcgactaac gctaattgct agcgcgtttt atgccgtgtt tgcggcgcgc accgctcttg
     1861 cgcaagcatc gcaatcctcc aatcgcagtt cgtcggcgtt cgatcgtcct gattcgtcga
     1921 tgtcttcgtc atcatcctcg tcaccttcgt cccgctattc cagtccagag ggcgacagtt
     1981 ctgacttcaa ctcacaacag cccaggaagc gcttcgatgg ccgcttcatg cgtgctcaac
     2041 atcgcatgca aaagccgctc aacgggaatc gcgacccgca agtcataccg gccatgccgg
     2101 cgcctcaagt cgatccgcaa ccacccgagc ggcctccgcg gcacggtgtg atgaccgcag
     2161 atgaacggcg gctgctgcgt cagcatatcg aggaagcggt cagggacctt tataagcgtt
     2221 gaggcttggc gtaatggcgg tgcctttgcg cggtccgatt tccggtcgag gcccagcggc
     2281 cttctggcgc taagcggatg ccgaagtgac atcggcggtc aacgagcacc ggtagcgcgc
     2341 cgttgattga cttagcacgg ccaccggact cgctcctcga tgcaaccctc caggttccct
     2401 gatttccacg ttgctcgcgg ttcgctggat cgacgcgggc gtggcgtaag tatggtgacg
     2461 cttgtcaacg cgttatgttt aatgctgacc agcgcgttga cggctcaggc agcgcaaaac
     2521 aacacgccgc gccgggtgcg cactgtgcat cggacggaag cggcggcggt cgatgctgat
     2581 ccgctcgacg ccaccgatgc ccgcttcctg ctcacccgca cgggcttcga ggctaacgca
     2641 agcgaggtcg ccccatacat tggcatgagc cgcgaacagg ccgttgatgc gctgctggcc
     2701 ggtgcccgca ctgaagcctc aatcccggct cccgcgtggg cgacggagcc gatcccatcg
     2761 gttgaagtgc gccgtgcatg gacgcaggac gaacgtc
//
LOCUS       DATGBK010001871         2979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_253528, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001871 DATGBK010000000
VERSION     DATGBK010001871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253528"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..561
                     /locus_tag="VKJ77_26360"
     CDS             67..561
                     /locus_tag="VKJ77_26360"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010114571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HMC48864.1"
                     /translation="MHREPFSNEDDDIEGLPHPGEPLSADDPLAPLPFNPYKGNRGLT
                     RAWHAMKNSLNGFRVAIREESAFRQELTLAAILVPCGIFVPVSPVERAALLASVLLVL
                     MVELLNSSVEAAIDRISLERHELSKRAKDFGSAAVMVALLVCVLTWGLIVGPLLWRWA
                     LMLF"
     gene            750..1466
                     /locus_tag="VKJ77_26365"
     CDS             750..1466
                     /locus_tag="VKJ77_26365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HMC48865.1"
                     /translation="MEAKPPRRTRERILELSLKLFNDIGEPNVTTTTIAEEMEISPGN
                     LYYHFRNKDDIINSIFAQFEQLIEKRLRFPEDHRPTIDEMWSYLQYMADFLWQYRFLY
                     RDLNDLLARNRTLETHFKQIITHKVNFAQQLCDALVADHEMVATPAEIKVIATNMGVI
                     ATYWLSYQFVMNPRKYNEQETIRSELHQASLQIISMMAPYLRGRSRQIFDDLVSGKMP
                     ERVFADYRAPKEDGAPKEPI"
     gene            1466..2050
                     /locus_tag="VKJ77_26370"
     CDS             1466..2050
                     /locus_tag="VKJ77_26370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HMC48866.1"
                     /translation="MKAVCVYCGSANGARPVYAEAAKAFGRALVEADLALVYGGGSVG
                     LMGIIADEVLALGGRAIGVIPELLMNKEVGHKSLTELHVVPDMHQRKKKMADLSDAFV
                     SMPGGVGTFEELFETYTWAQLKYHEKPVALLNVDGYYDPLLAMLRHTVEEGFMRAPYL
                     DMLQVNADPVKLIESLKAYTPPLVDRWPEKRDAV"
     gene            2083..2829
                     /locus_tag="VKJ77_26375"
     CDS             2083..2829
                     /locus_tag="VKJ77_26375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC48867.1"
                     /translation="MSKVVLITGGSRGIGRAAALLCAARGWSIGVNYATNRSAADETV
                     ARVEAAGGRAVAIQGDVCEEADVIALFDATVRAFGPIDGFVNNAGIVAPGSALADMDV
                     ARMKRVFDTNVLGAYLGAREAARRMSTKRGGRGGSIVNVSSAAARLGSPNEYVDYAGS
                     KGAVDTLTIGLAKELGPEGVRVNAVRPGLIDTEIHASGGKPDRAAQLGALAPLGRPGT
                     AEEVAESIVWLLSDASAYVTGALLDVAGGR"
     gene            complement(2842..>2979)
                     /locus_tag="VKJ77_26380"
     CDS             complement(2842..>2979)
                     /locus_tag="VKJ77_26380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018431532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF924 family protein"
                     /protein_id="HMC48868.1"
                     /translation="EDFLQYALRHAEVIERFGRFPHRNVTLGRETTAEEHAWLKKKGG
                     F"
BASE COUNT          618 a          873 c          917 g          571 t
ORIGIN      
        1 cagcaagttt caaagaagcg caatgtgaaa gccaaacctt cagtgcaagc gaaatccctg
       61 ctcttgatac accgggaacc cttcagcaac gaagacgacg acatcgaggg cttgccgcat
      121 ccaggcgagc ccttgagcgc cgacgatccg ctcgccccgt tgccgttcaa tccctacaag
      181 ggcaaccgcg gcctgacccg cgcctggcac gcgatgaaaa actcgctgaa cggctttcgc
      241 gtggcgatcc gcgaggaaag cgcgttccgc caggagctga cgctcgccgc catcctggtg
      301 ccgtgcggca tattcgtgcc agtctcgccg gttgaacgtg cggcgctgct ggcgtccgtg
      361 ctgctggtgc tgatggtgga attgctgaac tcgagcgtgg aagcggcaat agaccggatt
      421 tcgctggagc ggcacgaact ctccaaacgg gctaaggatt tcggcagcgc ggcggtcatg
      481 gtcgccctgc tggtgtgcgt gcttacatgg ggcctgatag tcggcccatt actctggcga
      541 tgggccttga tgctgtttta gacgcgctta aacgcaccgc ggcacgcaac tggccacccg
      601 cgcagacccc gtccccactc agccgtttat aatcgtccga tatccaagat acccaccgat
      661 ttccgggttc gtgacgctgt ctctcaggct gtcacgcagg ccgcacccgg ccgcccccac
      721 ccggaacagg tcaaccaggt ccggacgaca tggaagccaa acctccccgc cgcacccgtg
      781 aacggattct cgaactatcg ctgaagctgt tcaacgatat cggggaaccg aacgtcacga
      841 cgaccaccat tgccgaagag atggaaatca gtccaggtaa cctgtactac catttccgca
      901 acaaagacga catcatcaac agcattttcg cgcagttcga acagctgatc gaaaagcggc
      961 tgcgctttcc ggaagatcat cgtccgacga ttgacgagat gtggtcgtac ctgcagtaca
     1021 tggcggattt cctgtggcag taccggtttt tgtatcgcga cctgaacgat ctgctcgccc
     1081 gcaaccgcac gctggaaacg catttcaaac agatcatcac ccacaaggtc aactttgcgc
     1141 agcaactgtg cgatgcactg gtagccgatc acgaaatggt cgcaacaccc gctgaaatca
     1201 aggtgatcgc gactaacatg ggcgtgatcg ccacgtactg gctgtcgtac cagttcgtca
     1261 tgaacccgcg caaatacaac gagcaggaaa cgatacgctc ggaattgcat caagcgagcc
     1321 tgcaaatcat ctcgatgatg gcgccgtatc tgcgcgggcg atcacggcag attttcgatg
     1381 acctcgtatc gggcaaaatg ccggaacgcg tctttgccga ttaccgcgcg ccgaaggaag
     1441 acggcgcccc taaggaacct atttaatgaa agctgtctgc gtatattgcg gctccgccaa
     1501 tggagccaga ccggtctatg ccgaagcggc aaaagcgttc ggccgcgcgt tagtggaagc
     1561 ggatctcgcg ctggtctacg gcggcgggag cgtgggattg atgggcatca tcgccgacga
     1621 agtcctggcg cttggtggcc gcgctatcgg cgtgattccc gaattgctga tgaacaagga
     1681 agtcggccat aaaagtctga cggaactgca tgtcgtgccc gacatgcatc agcgcaagaa
     1741 gaaaatggcc gatctctccg atgcgtttgt atcgatgcct ggtggggttg gtacgttcga
     1801 agagctgttc gagacctaca cgtgggctca gctcaagtat cacgagaagc cggtcgcgtt
     1861 gctgaacgtg gacgggtatt acgatccgct gctcgccatg ctgcgccaca cggtggaaga
     1921 aggattcatg cgcgctccgt atctcgacat gctgcaagtc aacgccgatc ccgtgaagct
     1981 gatcgaatcg ctcaaggcgt atacaccgcc gctggtggac cgctggcccg agaaacgcga
     2041 cgcggtttga tgactaaagc agactaagcg gagaacttga cgatgtcgaa ggtagtgttg
     2101 atcacgggcg gcagccgcgg catcggccgt gccgccgctt tgctgtgcgc ggcgcgtggc
     2161 tggtctatcg gcgtgaatta cgcgaccaac cgcagcgccg ccgatgaaac cgttgcacgt
     2221 gtggaagccg ccggtggccg agcggtcgcg attcagggtg atgtctgcga agaagccgac
     2281 gtgattgccc tattcgatgc gacggtacgc gcgtttggtc ctatcgatgg tttcgtgaac
     2341 aacgcgggca ttgtcgcgcc cggttccgcg ttggccgaca tggacgtcgc gcgcatgaaa
     2401 cgcgtcttcg ataccaacgt gctcggcgcg tatctcggtg cgcgcgaagc ggcccggcgc
     2461 atgtcgacga aacgcggcgg acggggcggg tcaatcgtca atgtgtcgtc ggcggcagcg
     2521 cggctcggct caccgaatga gtacgtggat tacgcgggat cgaaaggcgc cgtcgatacc
     2581 ttgacgatcg gcctcgcgaa agaactcggc ccggaaggcg tccgcgtgaa tgccgtccgg
     2641 cccggtttga tcgataccga gattcacgcg agcggcggca agcccgatcg cgcggcgcag
     2701 ttgggcgcgc tcgcgccgct ggggcggccc ggtacggctg aagaagtggc ggaatcgatt
     2761 gtctggctgt tatcggatgc gtcggcgtat gtgacaggcg cattgctcga cgtcgcgggc
     2821 gggcgataga acgttggaac gctagaagcc gcccttcttc ttgagccacg cgtgttcttc
     2881 ggccgttgtc tcgcgcccga gggtaacgtt gcgatgcgga aagcggccaa accgctcgat
     2941 cacttcggca tggcgcagcg cgtattgcag aaagtcttc
//
LOCUS       DATGBK010001872         2568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_231095, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001872 DATGBK010000000
VERSION     DATGBK010001872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231095"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            107..907
                     /locus_tag="VKJ77_26385"
     CDS             107..907
                     /locus_tag="VKJ77_26385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HMC48869.1"
                     /translation="MQNYGLAHVWAQGDFVTRGIALALAIMSILSWTVILVKGLNVVR
                     LKRLTKNAEQAFWHSDDFADGIKKLSSHSSNAQDNPFLALALSGQDAADHHHQTQPHL
                     HDRMDVSDWITRCLKDTMDEGVGRMQAGLAVLASIGSTAPFVGLFGTVWGIYHALLTI
                     GATGQTSIDQVAGPVGESLIMTAFGLFVAIPAVLGYNALTRGNKTIVTKLNRFAHGLH
                     AFFVTGTKLASSKRGDGLRLATQHAASVATVGAAGSASGPKQPASRVS"
     gene            920..1345
                     /locus_tag="VKJ77_26390"
     CDS             920..1345
                     /locus_tag="VKJ77_26390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013093275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HMC48870.1"
                     /translation="MAMSPFSSDEDDGMMSEINMTPLVDVMLVLLIIFLVTIPAINHA
                     VKIDLPKASSQPQDTKPAHVDVAVEADGTVLWNDQKVDDAALQSRIADASKQTPQPEL
                     RLRADRKVPYERVADVMSAAQGGGLSKIGFVTEPKAGSK"
     gene            complement(1706..>2568)
                     /locus_tag="VKJ77_26395"
     CDS             complement(1706..>2568)
                     /locus_tag="VKJ77_26395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HMC48871.1"
                     /translation="SRLSRRVSELETSLGVRLMQRSTRKLALTEAGQLFYQHCKAMLA
                     EAQAAVDIVHSLRDSPRGSVRVSVPVTIAQTFLSEVMPDFLHRYPEVRVVLSVTNRVI
                     DLFEDAIDVALRVRSEPPVNSTIVARPLWRTEQMLVAAPSLLKPNAPPLTPSELAQFD
                     TIDVPATDGRHVFRLIAPDGTRHEFEHEPRLVTADLGMIREAVLRGVGIAALPEMMYG
                     AALRTGQMSPVMPGWTFPTPQLYAVFLSRQGMVPAIRAFVDFLVESINDSNRFPGECP
                     LPTEPARETV"
BASE COUNT          540 a          767 c          792 g          469 t
ORIGIN      
        1 gttcgtattt ggtttgaacg actagcgcga cagtcgggac cgatccaacg aacgctgaat
       61 agcactaaga attcgaccta atttctagat atctacagga actgcaatgc aaaactacgg
      121 cttggcgcat gtctgggcgc aaggggattt cgtcacgcgg ggtatcgcgc tcgcgctggc
      181 gatcatgtcg atcctgtcgt ggacagtgat tctggtgaag ggcctgaacg tggtgcgcct
      241 gaagcggctc acgaaaaacg cggagcaggc gttctggcat tcagacgatt tcgccgatgg
      301 catcaagaag ctgagcagcc actcctcgaa tgcccaggac aacccgttcc tcgcactcgc
      361 cctctccggg caggacgccg ccgatcacca tcatcagacg caaccgcatc tgcacgaccg
      421 tatggatgtg tcggactgga tcacgcgctg cctgaaggac accatggacg aaggcgtcgg
      481 acggatgcag gcggggctcg ccgtgctcgc gtcgatcggc agcacggcgc cgttcgtcgg
      541 attgttcggc acggtgtggg gcatttatca cgcgctgctg accattggcg cgaccggtca
      601 gacgtccatc gatcaggtcg cgggaccggt cggcgagtcg ctgatcatga cggccttcgg
      661 cctgttcgtc gcgattccgg cggtgctggg atacaacgcg ctgacgcgcg ggaacaagac
      721 cattgtcacg aagctgaacc gtttcgcgca cggcctgcac gcgttcttcg taacgggcac
      781 caagctggcg tccagcaagc gtggagacgg gctgcgcctg gctacgcaac acgctgctag
      841 cgtcgcgacg gtgggtgctg ccgggtctgc gtcgggaccc aagcagcctg catcgcgtgt
      901 gagctaaggg gacatcgcca tggccatgag ccctttctcc agtgatgagg acgacggcat
      961 gatgagcgaa atcaacatga cgccgctcgt cgacgtcatg ttggttctcc tgatcatctt
     1021 tctcgtcacg attcccgcga tcaaccatgc ggtgaaaatc gacttgccta aggcgagcag
     1081 ccagccgcag gacacgaagc cggcgcacgt ggacgttgcc gtcgaagcgg acggaacggt
     1141 gctctggaac gaccagaagg tcgacgatgc cgcgctgcag tcgcgcatag ccgatgcctc
     1201 gaaacagaca ccgcagccgg aattgcgcct gcgtgcggac cgcaaggtgc cgtatgagcg
     1261 tgtcgccgat gtgatgtcgg ccgcccaagg cggcgggtta tcgaagatcg gctttgtcac
     1321 cgagccgaag gcgggcagca agtagcgcgg tacgatttgc gcgcgtactt agattcgaag
     1381 cccacaaagt aaaaggcctt catcgcaatg atgaaggcct ttttttgtgt gcgcgccggc
     1441 acattcgggc tagcggttac tttggcgtcg agacattcga atccgcagta tcgccacatg
     1501 cgacagccgt gctcgacacg gacagcgcta ttagccctat caggcctact ataaaagtgg
     1561 ccgtgagttt tcgcataagc agctccttag cgaagagatt ccaatatagc gcccgagcac
     1621 tgcacgttca agccggcggc gattgaatct gaccatcgca agcgcacgct tcaatgtcag
     1681 aaacttacgc atacgccgcg attagtcaca ctgtttcgcg agcgggctcc gtggggagag
     1741 gacattctcc ggggaagcga ttgctgtcat tgatcgactc gacaagaaaa tcgacgaagg
     1801 ctcgaattgc cggcaccatg ccctgccgcg ataaaaacac cgcatagagt tgcggcgtcg
     1861 gaaaagtcca gccgggcatc actggcgaca tctggccggt acgcagcgcc gcgccgtaca
     1921 tcatctccgg cagcgccgcg atacccacac cacgcagcac cgcttcgcgg atcatgccga
     1981 ggtccgctgt cacaaggcgc ggttcgtgct caaattcgtg acgcgtgccg tcgggcgcga
     2041 tcaggcgaaa gacgtggcgg ccgtcggtgg ccgggacatc gatggtatcg aattgcgcca
     2101 gctccgacgg cgtgagcggt ggcgcgttcg gcttaagcag cgaaggcgcg gccaccagca
     2161 tctgttccgt gcgccagagc gggcgcgcaa cgattgtcga attgacgggt ggttccgagc
     2221 gcacgcgcaa tgcaacgtca atagcatctt cgaacaagtc gatcactcgg ttcgtcacgc
     2281 tcaggacgac gcgaacctcg gggtatcgat gcaggaaatc gggcatcacc tctgataaga
     2341 acgtctgcgc gatcgtcaca ggcacgctaa cccgcacact gccgcgcggc gaatcacgca
     2401 ggctatgcac gatatcgaca gcggcctggg cttccgcgag catcgccttg caatgctggt
     2461 agaagagctg gccggcctcc gtcagtgcaa gctttcgcgt ggaccgctgc atcaaacgca
     2521 cacccagcga cgtctcaagc tcggacacgc gccgcgacaa gcgcgact
//
LOCUS       DATGBK010001873         1997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_69281, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001873 DATGBK010000000
VERSION     DATGBK010001873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69281"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..469
                     /gene="bamE"
                     /locus_tag="VKJ77_26400"
     CDS             <1..469
                     /gene="bamE"
                     /locus_tag="VKJ77_26400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008351377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HMC48872.1"
                     /translation="KLKAFFNAVKPDTLLLKDLTPGVTTEAEMRDQMGEPETARTFTD
                     GSKRLEYPRGPAGTNTYFVDIDANGKFTAVTQVLTAENIAKVRPGMTQDEVRRLLGKP
                     TTIAEYPLKKERVWSWHWEEGGVTRDAMFNAHFGPDGIVTTTSRSEALGGGKH"
     gene            509..949
                     /locus_tag="VKJ77_26405"
     CDS             509..949
                     /locus_tag="VKJ77_26405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48873.1"
                     /translation="MDHQKSKRALEYEGLMALAARHRADRALTVETLETADAGWQCGR
                     GHAWDDGLSAAQNVRCMNCASQRREQHTARLKALAEERGGRLLSASYVDAITPLRWEC
                     AFGHSWDAQADIATRRWCAECRRRGVYDAPTPYRTEEAIARDGR"
     gene            1066..1398
                     /locus_tag="VKJ77_26410"
     CDS             1066..1398
                     /locus_tag="VKJ77_26410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013698149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4148 domain-containing protein"
                     /protein_id="HMC48874.1"
                     /translation="MKKIALFVMSAAVLASSSAFAQAQGLTRAEVRQQLVEAQQDGSQ
                     LVSNASYPDVARIYTNQVTQAKQGTSAYGGVAAGSSVSSSHFANVGSPSHEACVGPYS
                     FCNIYAGS"
     gene            complement(1497..1922)
                     /locus_tag="VKJ77_26415"
     CDS             complement(1497..1922)
                     /locus_tag="VKJ77_26415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007736462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3293 domain-containing protein"
                     /protein_id="HMC48875.1"
                     /translation="MFNSAIDPDTLRAYEETHYRVLGDAPTTLRIGHANPDLAKLHRA
                     FGVDCSAFITAANPFSTLTSATANAVRQAVLAEQLGRMGLRFVEGIGEHPSGTWPGEP
                     SFLVLGIKLSDAKQLGMEHRQNAIVWCGSDTVPQLILLR"
BASE COUNT          428 a          565 c          623 g          381 t
ORIGIN      
        1 caagctcaaa gcgtttttca acgccgtcaa acccgacacc ttgctgctca aggacctgac
       61 gccgggagtc acgaccgagg cggagatgcg cgaccagatg ggcgaaccgg aaacggctcg
      121 aaccttcacc gacggctcga agcgcctcga atatccgcgc ggcccggcgg gcacgaatac
      181 ctatttcgtc gatatcgatg caaacggcaa gttcaccgcc gtcacgcagg tcctgacggc
      241 ggagaacatt gccaaggtac ggcccggcat gacgcaggac gaagtgcggc gcttgctggg
      301 caagccgacg accatcgccg aatatccgct caagaaagag cgtgtgtgga gctggcattg
      361 ggaggagggc ggcgtgaccc gcgacgctat gttcaatgcg catttcggcc ccgatggtat
      421 tgtgacgacc acgtcgcgat cggaagcatt aggcggtggc aagcattgag ctgcgcggcg
      481 gggcgtttca atatcggcag ccatactgat ggatcatcaa aaatcaaaac gcgcgcttga
      541 gtacgagggg ttgatggcgc ttgcggcgcg tcatcgcgca gatcgggcgt taacggttga
      601 aacgcttgaa acggccgacg caggctggca atgcggccgc ggacatgcat gggacgacgg
      661 cttgagcgcc gcgcagaacg tgcgctgcat gaactgcgcg tcgcagcgcc gcgagcagca
      721 cacggcgcgg ctgaaggcgc tggcagagga gcggggtgga cggttgttat cggcgagtta
      781 cgtcgatgcc atcacgccat tgcgatggga atgcgcgttc gggcatagct gggatgcgca
      841 agcggacatt gccacgcgac gctggtgtgc ggagtgcagg cgtagaggcg tgtacgacgc
      901 cccgacaccg tatcgcacag aagaagcgat tgcacgcgat ggccggtgac tctggcccta
      961 cgacgcccac gcccacgcgt gaaattattt tcgacttatc cggaatagac ggggaaaaaa
     1021 tgggttcgcc ctagtactaa cccgttaaac actctggagt cgaaaatgaa aaagatcgcc
     1081 ctgttcgtga tgtccgccgc tgtcctcgca tcttcaagcg cattcgccca ggctcaaggc
     1141 ctgacccgcg cggaagtccg ccagcaactc gttgaagcgc aacaagacgg ctcgcaactt
     1201 gtcagcaacg cgtcgtatcc cgatgtggct cgcatctata cgaaccaggt cacgcaggca
     1261 aagcagggca catcggccta tggtggcgtg gcagccggtt cgagcgtcag ctcgtcgcac
     1321 tttgcgaatg tcggcagccc gagtcatgaa gcctgtgtcg ggccgtacag cttctgcaac
     1381 atctatgcgg gttcttgatg gctgcaccga cgactcgtgc atggttagct tgagtcgcgg
     1441 gccgtcgttt cgtggttgca ctggcttaag cgattaacgt tagccgcttg aaagagttat
     1501 cgaagcagga tcagttgagg cacggtgtct gagccgcacc atacgatcgc gttttgtctg
     1561 tgttccatac cgagttgttt tgcatcacta agttttattc caagtaccag gaagctcggc
     1621 tcacccggcc atgttcccga aggatgctcg ccgatccctt cgacaaagcg cagacccatg
     1681 cggccaagct gctctgcaag cacagcttgc cggaccgcgt tggccgttgc actggtcaat
     1741 gtgctgaacg gattcgccgc ggtgatgaac gcactacagt caacgccaaa ggcccgatga
     1801 agtttggcga gatcgggatt ggcgtgacct atgcgcagcg ttgtcggagc atcgcccaga
     1861 acacgataat gcgtttcctc gtaagcccgg agcgtgtctg ggtcgatggc agaattgaac
     1921 atatttgagc gcattcccct ccctagtctg gccggttcgc ttgcgaaccc ataggcgaag
     1981 ccgaccggat caggagg
//
LOCUS       DATGBK010001874         1787 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_115017, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001874 DATGBK010000000
VERSION     DATGBK010001874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115017"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..783
                     /locus_tag="VKJ77_26420"
     CDS             <1..783
                     /locus_tag="VKJ77_26420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020202937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prenyltransferase/squalene oxidase
                     repeat-containing protein"
                     /protein_id="HMC48876.1"
                     /translation="VVMAMDRAQGGLGDQRFQPAIDRGREWVCGLQSRNGGWGAFDAD
                     NDYLYLNNIPFSDHGALLDPPTEDVTGRCASMLAQLGERAETNPALHSALDYLRRTQL
                     ADGSWYGRWGMNYIYGTWSVLCCLNAVGLDPASPVMRKAVDWLVSIQNADGGWGEDGT
                     SYKLDYHGYESAPSTASQTAWALIGLMAAGATDSPVVKRGVDFLLRTQGPDGLWAEER
                     YTATGFPRVFYLRYHGYAKFFPLWALARYRNLMRGRYVKFGM"
     gene            complement(808..1407)
                     /locus_tag="VKJ77_26425"
     CDS             complement(808..1407)
                     /locus_tag="VKJ77_26425"
                     /inference="COORDINATES: protein motif:HMM:NF021438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HMC48877.1"
                     /translation="MMKLRFLTVIVASLMAVLAFAGPLRAAEPSAAGMWAQIDEKGRV
                     GGWFLIFEHDGAYEGAIAKMFFEPGEDTNPICTRCKGDQKNAPSLGLTIIKGMQRKGL
                     VYQNGNILDPRDGQIYKAKMTLSPDGQQLTLRGYLGFELFGQNQVWKRLPDDVLPLNE
                     MPANLVPYWNALPKSSDGVMTKGVGSPPSGSATTSQSGR"
     gene            complement(1591..>1787)
                     /locus_tag="VKJ77_26430"
     CDS             complement(1591..>1787)
                     /locus_tag="VKJ77_26430"
                     /inference="COORDINATES: protein motif:HMM:NF013035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cysteine rich repeat-containing protein"
                     /protein_id="HMC48878.1"
                     /translation="MVAASSTAIASGTPQEQAACRPDVRRFCHALKPDAGDGSFLACL
                     QEHRKQLHRACREVLESHGQ"
BASE COUNT          327 a          559 c          546 g          355 t
ORIGIN      
        1 gtggtcatgg cgatggaccg ggcgcagggc ggtcttggcg accagcggtt ccagccggcg
       61 atcgaccgcg ggcgtgaatg ggtctgcggc ctgcagagtc gcaacggcgg ctggggcgcc
      121 tttgatgccg acaacgacta cctgtacctc aacaatattc cgttctccga tcatggtgcc
      181 ctgctcgacc cgccgaccga agacgtgacc gggcgctgcg cgtcgatgct ggcgcaactc
      241 ggcgagcggg cggaaacgaa cccggctttg cacagcgcac tcgactatct tcgccgcacc
      301 cagctcgcag acggcagctg gtatggccgc tggggcatga attacatcta cggcacatgg
      361 tcggtgctgt gctgcctcaa cgccgtcgga ctcgatcccg cttccccggt aatgcgcaag
      421 gcggtcgact ggctcgtttc cattcagaat gccgacggcg gctggggcga ggacggcacc
      481 agctacaagc tcgactacca cggctacgag agcgctccga gcaccgcctc gcagaccgcc
      541 tgggcgctga tcggcttgat ggcggcgggc gcgaccgatt cccccgtggt caaacgcggg
      601 gtcgactttc tgctgcgcac gcagggaccc gatgggttat gggcggagga gcgctacacc
      661 gcgaccggat ttccccgcgt gttctattta cgctaccacg gctatgccaa attctttccg
      721 ctctgggcgc tggcgcgcta ccggaacctg atgcgaggcc gctacgtcaa atttggcatg
      781 tgacgctgcc gaatacccaa agtttagtta ccggccagac tgcgaggtcg tcgcgctccc
      841 gcttggcgga gacccgacgc ccttcgtcat cactccgtcg gacgatttcg gcagtgcgtt
      901 ccaatacggc accaggtttg ccggcatctc gttcagcggt aacacatcgt cgggaagccg
      961 tttccacacc tggttctggc cgaatagctc aaagccgaga tagccgcgca aagtgagctg
     1021 ctggccatcc gggctcagag tcattttggc cttataaatt tggccgtcgc gcggatcgag
     1081 gatgttgccg ttctggtaga cgagaccctt gcgctgcatg cccttgatga tggtgagacc
     1141 aagcgacggc gcattcttct ggtcgccctt gcagcgcgtg cagatcggat tcgtgtcttc
     1201 gccgggctcg aaaaacatct tggcgatggc gccttcgtaa gcaccatcat gctcaaatat
     1261 gagaaaccag ccgccgaccc ggcctttctc gtcgatctgc gcccacatgc cagcggcgga
     1321 gggctcggcc gcgcgcagcg gaccggcaaa tgccagcacg gccattagac tggccacgat
     1381 gaccgttaaa aacctcagct tcatcatgca gcacccgatt cgccgcagtg gacgcacgct
     1441 ttgtacatca ttcgacaatg tgttcttttc gcggaatcaa cgaacacgtc tggcttattc
     1501 tttagtttac gtcgcgagcg cacgagttcc acgcgtcagc atttgttggc ttgtctagac
     1561 gcatatcgcg aacaccgagc gttgctaact tcactgaccg tggctttcga gcacctcgcg
     1621 gcaagcgcga tgaagttgct tgcggtgctc ctgcagacac gcgagaaaac tcccgtcgcc
     1681 cgcgtccggc ttgagggcat ggcaaaaccg gcggacgtcc gggcggcatg cggcctgctc
     1741 ttgaggggtg cccgacgcga ttgcggttga ggaagcggcg accatga
//
LOCUS       DATGBK010001875         1827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_277534, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001875 DATGBK010000000
VERSION     DATGBK010001875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277534"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1286)
                     /locus_tag="VKJ77_26435"
     CDS             complement(<1..1286)
                     /locus_tag="VKJ77_26435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006414735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC48879.1"
                     /translation="MKLFNSSASASASGSASASVAIRSALAAAVAAFALAGCANYAGI
                     KSDKQIAQTQSDALQAAQSLPSQGGQWPSLDWAKQFGDPQLPQLIDEALAGNPSIAQA
                     QARIAKASSYIESSRSALYPKVNGSYSWSRELYSGNALYPPPYGGSWYSENNALVSAS
                     WDLDLWGKNRARLDQAVSQQKAAEADMQQARVTLAASVAQTYNQLALLYALRDVAQRE
                     IANRTDIGRITNGRVLAGLDTNVESRTAEGNVATSQTNLSELDGQITTTRYQLGALLG
                     QGPDRGLKIAKPVLNTKIEVTLPDNVPADLISRRPDIVAARWQVEAATSNVKEAKAEF
                     FPDINLSAAAGFDAFGWSRFLNFSSRQFDAGPAIHLPIFDAGALRSQLKGRYADFDLD
                     VANYNQTLINALNDVATQIASIRSVDQQTSDATRAL"
     gene            complement(1420..>1827)
                     /locus_tag="VKJ77_26440"
     CDS             complement(1420..>1827)
                     /locus_tag="VKJ77_26440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HMC48880.1"
                     /translation="TMADLGITSTQASIMFMLASGRSLAAADLAREYGIDASAVTRLI
                     DRLEKRGLITRLRSEEDRRVVRLALTEEGLALAGQIPAIFTMVLDRLLSGFTPEEVGF
                     LKSMLRRILLNSGDPMSAAMLGMQDRSTSKSSY"
BASE COUNT          338 a          550 c          567 g          372 t
ORIGIN      
        1 tcgagggcac gcgtggcgtc gctggtttgc tgatctaccg aacgaatgga cgctatctgc
       61 gtggcgacgt cgttaagcgc gttgatcaag gtctggttgt agttggctac gtccaggtca
      121 aagtccgcgt aacggccctt caactgcgag cgtaatgcgc cggcatcgaa gatcggcaag
      181 tgtatggccg gccccgcgtc gaactgacgg ctgctgaagt tcagaaagcg gctccatccg
      241 aacgcatcga aacctgccgc cgccgacaaa ttgatgtcgg ggaaaaactc ggccttcgct
      301 tccttgacgt tcgatgtcgc cgcttcgact tgccagcggg ccgcgacaat atccggacgg
      361 cgcgaaatca gatccgcggg cacgttgtca ggcagcgtga cctcgatctt cgtgttgagc
      421 accggcttgg cgatcttcaa gccacgatcc ggaccctggc cgagcaacgc gcccaactga
      481 taacgcgtag tcgtgatctg gccgtcgagt tcggacaggt tcgtctggct cgtcgcgaca
      541 ttgccttcgg cagtgcggct ttccacgttc gtatcgaggc ccgccaacac gcggccgttc
      601 gtgatgcgcc cgatgtccgt ccggttcgcg atctcccgct gggccacgtc gcgcagcgcg
      661 tagagcaggg cgagctggtt ataggtctgc gcaacggagg cggcgagcgt cacgcgcgcc
      721 tgctgcatgt cggcctcggc ggccttctgc tgcgagaccg cctgatccag ccgtgcgcga
      781 ttcttgcccc acaggtcgag atcccacgac gcgcttacga gtgcattgtt ttcgctatac
      841 cacgagccgc cgtacggagg cgggtagagc gcgtttccag aatacagttc gcgtgaccat
      901 gagtacgagc cgttcacctt ggggtaaagc gcggagcgcg acgactcaat ataggacgac
      961 gccttcgcaa tgcgcgcttg tgcctgcgca atcgacggat tgccggccag cgcttcgtcg
     1021 atcaattgcg gcaattgcgg atcgccaaac tgcttcgccc agtcgagcga tggccactgg
     1081 ccgccttgcg acggcaggct ttgcgcggct tgcagcgcat cgctttgtgt ctgggcgatt
     1141 tgcttgtcgc ttttaatgcc ggcgtagttc gcgcaacccg caagggcgaa cgccgccacg
     1201 gcggcagcca atgcgctgcg tattgcgacg gacgcagacg cagacccaga cgcagacgcg
     1261 gacgcggacg aattaaagag tttcatcgct cggctctttg ataagaaggg taaagatgga
     1321 cgctgcaact aatttctttc atttttatta cggtaccagt cgcgcaacgg ggaagtgccg
     1381 tcattgcgcg ggcatcattt agcggcgcgc gacgcgacat caataggagg atttagaagt
     1441 ggatctgtcc tgcatgccga gcattgccgc agacatgggg tcacccgaat tcaacaggat
     1501 tcgacgtagc atgcttttca ggaagcctac ttcctctggc gtaaatccgc tgagcagcct
     1561 gtcgagcacc atcgtaaaaa tcgccggaat ctgtccggca agcgcaaggc cttcttcagt
     1621 cagcgctagc cggacgaccc gccggtcttc ctcgctgcgc aagcgcgtaa tgagcccgcg
     1681 cttttccagg cggtcgatca ggcgggtcac cgcgctcgcg tcaatcccgt attcgcgggc
     1741 gaggtcggcg gcggcgaggc tccggccgct tgccagcatg aacatgatgc tggcttgcgt
     1801 gctggtgatg ccgagatcgg ccatcgt
//
LOCUS       DATGBK010001876         1588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_277538, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001876 DATGBK010000000
VERSION     DATGBK010001876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277538"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            168..629
                     /locus_tag="VKJ77_26445"
     CDS             168..629
                     /locus_tag="VKJ77_26445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011466368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HMC48881.1"
                     /translation="MQKITPFLWYNDQAEEAANLYVSIFKGGKIVDVRRTGDGEDASV
                     TAVTFEIGGQEYIAFNGGPHFTFTPATSLFVHCDTQAEVDYFWEKFCANGGTPSQCGW
                     LTDKFGLSWQIIPEILGDLLSDADDERAARAMQAMLTMSKIDIAKLKEAAG"
     gene            928..>1588
                     /locus_tag="VKJ77_26450"
     CDS             928..>1588
                     /locus_tag="VKJ77_26450"
                     /inference="COORDINATES: protein motif:HMM:NF037667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48882.1"
                     /translation="MPLYPSAMRHFLRPLAAFAVATFLVSSIASAQPTPAPRERPFGR
                     GKAAYHPTPVPPYRITDEDVKLTFRFDQNFVHAIATMKVIDTTGAATLPFDSIGLSYE
                     SVTINGKPATYKTDDAHLLVDVPKPSDTTSTLTLRAIYHSVPKRGIYFVQPNGAYPNR
                     GSEIWTQGETEDTRRWLPTWDEPNMKFTTSVAAIVPKDWTLISNGSMVADMPYAQLRR
                     MK"
BASE COUNT          325 a          488 c          453 g          322 t
ORIGIN      
        1 tccgatctca tcgccaagct ttccggcaag gcacattggc gcaagctgtt cgtccgcaaa
       61 catgaggcac cgcttgatga agcgcgcacc atctgccgcg acattattgc atcgggtgga
      121 atgccgatgc tgttcgattc cgtctaacac ccgcacccgg agaatccatg cagaaaatta
      181 cgccgttcct ctggtataac gatcaggcag aagaagccgc gaacctctat gtttccatat
      241 ttaagggcgg aaaaatcgtc gacgttcgcc gtaccggcga cggcgaggac gcaagcgtca
      301 cggcggtcac gttcgagatt ggcgggcaag agtacatcgc ttttaacggc ggcccccact
      361 tcacgtttac gccggcgact tcactgttcg tgcattgtga cacgcaagct gaggtcgact
      421 atttctggga gaaattttgc gcgaacggcg gcacgccgag ccaatgcggg tggctgaccg
      481 ataaattcgg cctgtcctgg caaatcattc ctgagattct cggcgatctg ctcagcgacg
      541 ccgatgacga gcgggccgcg cgtgcgatgc aagcgatgtt gacgatgagc aagatcgaca
      601 ttgccaaact caaagaggcc gccggctagt gccccgctag gacatcccgc gttcgggcgt
      661 tccgcgcggg ccgccggacc ggcacgttgc gtgtccgcat tggcacgcct taagcacgtc
      721 tttgcccttt tttacatcgg aatcttcggt cgtattgtcc atgcaccact cgccgcagcc
      781 gccggcactt accaagtcat tgcagtgaca ggacgcgttg atgcactgat gtttgggcgc
      841 atcgcccgga tcgaagttcg cggcttctgc agtcatgcat cgtacgtacc ccgccgattg
      901 gctggtgcct cgcaaggacg ggctcgcttg ccgttgtacc catcggctat gcgtcatttt
      961 ctacggcctc ttgccgcgtt cgcggtcgct acgtttctcg tttcatcgat cgccagcgcg
     1021 cagcccacgc cggcgccgcg cgagcggccg ttcggccgcg gaaaagcagc gtaccatccg
     1081 actccggtgc cgccctaccg cattaccgac gaggacgtga agctgacgtt ccgattcgat
     1141 caaaatttcg tgcacgcgat cgcgacgatg aaagtgatcg acacgactgg ggcagcgacg
     1201 ttaccgttcg acagtatcgg tctctcctac gagagcgtaa cgattaacgg caaaccggcg
     1261 acgtataaaa cggacgacgc ccacctgctc gttgacgtac cgaagccgtc ggacacaaca
     1321 tcgacgctga cgctacgcgc gatctatcac tcggttccta agcgcggcat ctatttcgtg
     1381 cagcccaacg gcgcatatcc gaatcgcggt tcggaaattt ggacgcaagg cgagaccgaa
     1441 gatacgcgcc gctggctgcc gacgtgggac gagcccaaca tgaagttcac cacgtccgtg
     1501 gcggcgatcg ttcccaagga ctggacgctc atttccaacg ggtcgatggt cgccgatatg
     1561 ccgtatgcgc aactgcgccg catgaaga
//
LOCUS       DATGBK010001877         1672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_253585, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001877 DATGBK010000000
VERSION     DATGBK010001877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253585"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..956
                     /locus_tag="VKJ77_26455"
     CDS             30..956
                     /locus_tag="VKJ77_26455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020066496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HMC48883.1"
                     /translation="MRLDDEAESRNVEDRRGAGGGGGGGFRIGGGRSIGIGTIVVALA
                     AAYFFGIDPMLILSGGSTGQSGSQSGSYSQPQTQQRQMDPRAQPQASANDQDAVFVRR
                     VLGNTERTWEQIFRTRYNQDYPAPKLVLFTGGTATACGTGQSAMGPFYCPNDRTVYID
                     LSFYRELRDRFGAGGDFAQAYVIAHEVGHHVQNVLGIMNKVDAARQRMSREQANHLSV
                     RVELQADCFAGVWANVAQKNNAKLIEPGDFQEGLNAAGAIGDDRLQKETQGRVVPEAF
                     THGTSAQRQRWLNRGLATGDLGQCDTFGAKTL"
     gene            1291..>1672
                     /locus_tag="VKJ77_26460"
     CDS             1291..>1672
                     /locus_tag="VKJ77_26460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004522315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HMC48884.1"
                     /translation="MKRILIVKVTSLGDIVETQPVVSDLRRAFPSAKIDWAADAAFAD
                     IIRWNPAVDRVLSAPLRKFKKARSWADLKDIAASIGELRAEKYDVILDIHGVYKSAII
                     AFLARGRRRYGYKNKDLGELGAAFA"
BASE COUNT          351 a          462 c          549 g          310 t
ORIGIN      
        1 aaatcaaaca tcgcgacggg agaaaaacca tgcgtcttga cgacgaagca gagagccgca
       61 acgtggagga ccggcgtggg gccgggggag gtgggggcgg aggatttcgc atcggcggag
      121 ggcgctcgat tggtatcggc accattgtgg tggcgttggc ggccgcctat ttcttcggta
      181 tcgatcccat gctgatcctg agcggcggtt cgaccgggca gagtgggtca cagagcggtt
      241 cttacagcca gccgcagaca cagcagcggc agatggaccc gcgcgctcag ccgcaggcaa
      301 gcgcgaacga tcaagacgca gtgttcgtgc gccgggtgct cggcaacacc gagcgcacat
      361 gggagcagat tttccggacc cgctacaacc aggattaccc ggcgcccaag ctcgtcctct
      421 tcaccggcgg caccgcgacc gcttgcggaa ccggccagtc agccatgggg ccgttctact
      481 gcccgaacga ccggacggtg tacatcgatt tgtcgttcta tcgggagttg cgcgaccgct
      541 tcggtgcggg cggagatttt gcgcaggcgt acgtgattgc gcacgaagtc ggccaccatg
      601 tgcagaacgt gctcggcatc atgaataaag tcgatgccgc acggcaacgg atgtcgcggg
      661 aacaggccaa ccacttgtcg gtgcgtgtcg agttgcaggc ggattgtttc gcgggtgtct
      721 gggccaacgt ggctcagaag aacaacgcga agctgatcga gcccggtgac ttccaggaag
      781 ggctgaacgc ggctggagca ataggcgacg accggttgca gaaggagacg cagggacgcg
      841 tggttccgga agcgtttacg cacggcacga gcgcgcagcg gcagcgctgg ttgaatcgcg
      901 gactggcgac gggcgatctg gggcagtgcg acaccttcgg cgccaaaacg ctctgagcgt
      961 gtcctatctg cggccaccgc acgacgcaat tttcaatgcc aaggcgccag caggttgggc
     1021 gctttgttcg ggaaagaccg tgaaatagta gtgaaaaccg ttatttcgac ggataattcg
     1081 ggcagaacac gcagcgcaga acttacaaat gctgacagcg cggctttacg ccaatttata
     1141 gaattccggc ttttaaatcg atcatgaccc gaacggcttt cgaactgtcg aaagcgcgac
     1201 cggtcgagcg agccagccgt ccggcgcacg gtttcaggtg ttcccgcttg aaaccttgcg
     1261 ccggcgaatt aaaggtccca tagcatcccc atgaagcgaa tcctgattgt caaggtgaca
     1321 tcattgggcg atatcgtaga gacgcagcct gtggtctccg atcttcgccg tgcatttccg
     1381 tccgccaaga ttgactgggc agcagacgcg gcctttgccg acatcattcg ctggaatccg
     1441 gccgtggatc gcgtgttgag cgcgccgctg cgcaagttca agaaagcgcg cagctgggcg
     1501 gatttgaaag acatcgccgc gtctatcgga gaactgcggg ccgagaagta cgacgttatc
     1561 ctcgatattc atggcgtgta caagagcgcg atcatcgcgt tcctggcgcg cgggcgccgg
     1621 cgttatggct ataagaacaa ggatctgggc gaactcggtg cggcgtttgc gt
//
LOCUS       DATGBK010001878         2434 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_46165, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001878 DATGBK010000000
VERSION     DATGBK010001878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46165"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1305
                     /locus_tag="VKJ77_26465"
     CDS             <1..1305
                     /locus_tag="VKJ77_26465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012404027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC48885.1"
                     /translation="SSDDMLRRVLGETIELETVVSGGLWNTLADPNHLQNVIVNLAIN
                     ARDAMEGAGRLTIEAGNAMLDDEYTRHHDDLASGQYVMVAVSDTGCGMTPETLARAFE
                     PFYTTKAEGRGTGLGLSMAYGFMKQTGGHIKLYSEPGHGTTVKLYLPRSMEDEVVRVE
                     AANDPVTGGAETILVVEDDPNVRATAVDMLTQLGYQVLKAADAQSALSVLESGVHVDL
                     LFSDVVMPGPMRSVELARRAKDRLPALEVLFTSGYTENAIVHGGRLDPGVALISKPYR
                     RDALARKVRWMFRTRVYEAPDMPEAPEPPHAAAAPEPQPLQPLRVLIVEDDANTREAT
                     RELLELLDAKVLAVDSAQAALGLIAQQLFDVLLTDVRMPGMSGLDLARAMKRLQPRVH
                     VVLASGYGTGIAAELGEELSGATLLPKPFNFDELEQAVFRKP"
     gene            complement(1292..>2434)
                     /locus_tag="VKJ77_26470"
     CDS             complement(1292..>2434)
                     /locus_tag="VKJ77_26470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HMC48886.1"
                     /translation="APALSVQLVLSSNLPEGITLREPDNGPVVHLLRELRNVLPPGTR
                     LAIDGPRHAQRLWVRYPNSPNWIVTPVDLPPAAPILIESVGMLLAAVILSLVAAWQLQ
                     RPLSRVAQGARQFGAGERPVPVDERGPHELRDLIRAFNQMMRRINDADDEKAVMLAGI
                     AHDLKAPLTRLKLRASVLVKDDAERAHFIRDIDSLTRIVQQFLEFAANVPTSGPAINV
                     DCFLAEQFAQDEAGDTSLFRLDLRAGNAFHLPRTVLDRLVTNLVDNALEHGAPPVDIS
                     TGKRNDEWFITVRDYGDGIPPERLDDARKPFVRLDPARAGDGHCGLGLAIVVRLAHEL
                     GGRCDIGNAADGGLTVRIVIPMDEPERAGCGPALHTARVPEAIMAS"
BASE COUNT          442 a          758 c          818 g          416 t
ORIGIN      
        1 agttccgacg acatgctgcg ccgcgtgctc ggcgaaacca tcgaactgga aaccgtggtg
       61 tcgggcggct tgtggaacac gcttgctgat ccgaatcatt tgcagaacgt gattgtgaac
      121 ttggcgatca acgcgcgtga cgcgatggaa ggcgcgggcc gcctgaccat cgaggcgggc
      181 aacgcgatgc tcgacgacga gtacacgcgc catcacgatg acctggcaag cggccagtac
      241 gtgatggttg ccgtctcgga caccggttgc gggatgacgc cggaaacgct cgctcgcgcc
      301 ttcgagccct tctatacgac caaggccgaa ggtcgaggca ccggcctggg cttgagcatg
      361 gcatacggct tcatgaagca gaccggtggt catatcaagc tctatagcga gccgggccac
      421 ggtacgacgg tcaagcttta tctgccgcgc tcgatggaag acgaggttgt ccgcgtggaa
      481 gccgcgaatg atccggtgac gggcggcgcg gaaacgatcc tggtggtgga ggacgatccg
      541 aacgtacgcg cgaccgccgt ggacatgctg acccagctcg gttaccaggt gttgaaagct
      601 gcggatgccc agagcgcgct gagtgtgctc gagagcggcg tgcacgtcga tttgctgttc
      661 agcgacgtcg tcatgccggg accgatgcgc agcgtcgaac tggctcggcg tgcgaaggac
      721 aggctgccgg cgctggaagt gctgtttaca tcgggctaca ccgaaaacgc gatcgtgcac
      781 ggtggccggc tcgatccggg cgtggcgttg atcagcaagc cgtatcggcg ggatgcgttg
      841 gcacgcaagg tgcgctggat gttccgcacg cgggtttatg aggcgcccga tatgccggaa
      901 gcgccggagc cgcctcacgc tgccgccgcg ccagagcctc agccacttca gccactacgg
      961 gtcctgattg tggaggacga cgccaacacc cgcgaagcga cgcgtgagct gcttgagttg
     1021 ctcgatgcga aagtgctggc ggtggacagt gcccaggccg cgctgggcct gatcgcacag
     1081 caattattcg atgtcctgct caccgatgtc cgcatgccag gcatgtcggg cctcgacctg
     1141 gcacgcgcga tgaagcgttt gcagccgcgc gtgcatgtgg tgctggcgtc gggttacggg
     1201 acgggcattg cggctgagct tggcgaggag ctgagcggcg cgacgctcct gccgaagcca
     1261 ttcaacttcg atgaactcga acaggcagtg ttcaggaagc catgatggct tcgggcacac
     1321 gagcggtgtg taaagccggg ccgcagcccg cgcgctcggg ttcgtccatt ggaatcacga
     1381 tccgcacggt caggccaccg tctgccgcgt tgccgatatc gcagcggccg ccgagttcgt
     1441 gcgcgaggcg tacgacgatg gcaagtccca gtccgcaatg accatcgccc gcgcgcgccg
     1501 ggtccagacg gacaaacggc ttgcgggcat cgtccagacg ctcgggcggg atgccatcgc
     1561 cgtaatcgcg caccgtgatg aaccactcgt cgttgcgctt gcccgtactg atgtcgacgg
     1621 ggggcgcccc gtgttccagc gcgttatcga ccagattggt cacgagccgg tccagcacag
     1681 tgcgcggcaa gtggaatgca ttacccgcgc gcaggtcgag gcggaacagg gacgtgtctc
     1741 ctgcttcgtc ctgcgcaaac tgctccgcga gaaaacagtc cacgttgata gccggtccgc
     1801 tcgtcggcac gttggccgcg aattccagga actgctgcac gatgcgcgtc agggagtcga
     1861 tgtcgcgaat gaaatgcgcg cgctcggcat cgtccttcac cagcacgctc gcacgcagct
     1921 tcaggcgcgt gagcggcgct ttcaggtcgt gcgcgatgcc ggcgagcatg accgccttct
     1981 cgtcgtcggc gtcgttgatc cgccgcatca tctggttgaa cgcgcggatc aggtcgcgta
     2041 gctcatgcgg accacgctcg tctaccggga ccggccgctc gcccgcgccg aactgacgcg
     2101 cgccttgtgc cacgcgcgac aacggccgct gcagttgcca cgccgcgacc agcgacagga
     2161 tcacggcggc cagcaacata cccaccgatt caatcaggat aggcgccgcg ggcggcaggt
     2221 cgaccggtgt cacgatccag ttcggactgt tcggataacg cacccagaga cgctgcgcgt
     2281 gcctggggcc atcgatggcg agtcgcgtgc ccggcggcag cacgttcctc aactcacgca
     2341 acaaatgcac gacgggaccg ttgtcgggct cgcgcaacgt gatgccttcg ggcaggttcg
     2401 atgacaacac caactgcacg ctcaacgcgg gcgc
//
LOCUS       DATGBK010001879         2096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_253602, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001879 DATGBK010000000
VERSION     DATGBK010001879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253602"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VKJ77_26475"
     CDS             <1..504
                     /locus_tag="VKJ77_26475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015877207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC48887.1"
                     /translation="TGGALSSGDGDATLVGGRQRIMGAGARYVIGAATIGAVFTRTTL
                     DDPSEISQGGSYTALSGNKLTFNNYELNARYALTPALTLGGSYTFTDGKFDAATSSLS
                     PKWNAFMLQADYALSRRTDVYLEGVYQHATGATGVNALGNASIYNLAASSNGKQAVVA
                     AGVRIHF"
     gene            complement(592..2007)
                     /locus_tag="VKJ77_26480"
     CDS             complement(592..2007)
                     /locus_tag="VKJ77_26480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018423324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HMC48888.1"
                     /translation="MVKRRLLVAAVCAIALNACSFAPTYKVAATAIPTTFKEAGPWQP
                     AKPADRIPRDSWWTMYRDPVLSGLEAKIATANPNVAAAVARHDEASAYLQEARSGLFP
                     TIGAEADVSRQRQSDNRPLRGTDQPSTYNSATADVGIGYDLDLWGKVRNQVSAGRSQE
                     EASADDLESLRLSLQSSLASTYFELRGLDQRAKLLNDTIDTYTRALKLTVSRHDGGLA
                     SGMDVSRAQTQLASARAAADDTQASRALLEHAIATLTGTPASSFSLPPDVAFNYLPHV
                     PLGLPSTLLQRRPDVAAAERRVAAANANIGVAKAAFYPDISLGLDGGYQSDTFSPWLA
                     APNEIWSVGPQLLFTIFDGGKRSAAVANSRAQLAENGAKYRQTVLVAFQQVEDGLALL
                     HHLGDESVNEDQALSAAQQTLALATSQYRDGVVSYLDVVTAQTTELTAQISSLDLRTR
                     QLTASVSLIQALGGGWTRKPA"
BASE COUNT          384 a          670 c          671 g          371 t
ORIGIN      
        1 acgggtggcg cgctctcgag cggcgacggc gacgcaacgc tggtcggcgg tcgccagcgc
       61 atcatgggcg ccggcgcgcg gtacgtcatt ggtgcggcga ccatcggcgc ggtgttcacg
      121 cgcacgacgc tcgacgaccc aagcgagatc tcgcagggcg gctcatacac ggcgctgtcg
      181 ggcaacaagc tcacgttcaa caactatgag ttgaatgccc gttatgcact gacgccggca
      241 ttgaccctgg gcggctcgta cacgttcacc gacggcaagt tcgacgccgc cacgtcgagc
      301 ctctcgccga agtggaatgc gttcatgctg caagcggact acgcgctgag ccgccgtacc
      361 gatgtctacc ttgaaggcgt ctaccagcac gcgaccggag caacgggtgt gaatgcgttg
      421 ggcaatgcgt cgatttacaa cctggctgcg tcgtcgaacg gcaagcaggc agtggtcgca
      481 gcgggcgtgc gtatccactt ctgatcctgc ccgagcaggg tattacgtag aaacgccgcc
      541 gggccatgaa gcaccccagc ggcgttttca cttcgacggc tgaaataagg ctcaggcggg
      601 cttcctggtc catccccccc cgagagcctg gatcagcgat accgaagccg tcagctgtcg
      661 cgtacgcagg tccagcgacg aaatttgcgc agtcagctcc gtggtctgcg ccgtcaccac
      721 atccagatag ctcaccacgc catcccgata ctgcgacgtc gccagcgcta gcgtctgctg
      781 ggcggcgctc aacgcctgat cttcgttaac cgactcgtcg ccgagatgat gcagcagcgc
      841 gagaccgtcc tcgacctgct ggaaagccac aagcacggtc tggcggtact tcgcaccatt
      901 ctcggcgagt tgcgcccgcg aattcgccac ggccgcactg cgcttgccgc catcgaagat
      961 ggtgaatagc aactgcggtc ccaccgacca gatttcgttg ggtgccgcga gccagggcga
     1021 gaatgtatcg ctctgatatc caccatccag accgagtgaa atgtcagggt agaacgcggc
     1081 cttcgccacg ccgatatttg cgttcgccgc agccacgcgc cgctccgccg ccgcaacatc
     1141 gggcctgcgt tgcaagagtg tcgaaggtag cccgaggggt acgtggggta gataattaaa
     1201 cgcaacgtcc ggcggcaagg agaacgacga tgccggcgtt ccggtgaggg tcgcaatcgc
     1261 atgttcgagc agcgcgcggc tcgcctgagt atcgtcggcg gcggcacggg cggatgcaag
     1321 ttgcgtctgc gcccgcgaca catccatgcc ggaggccagg ccgccatcgt gacggctcac
     1381 ggtcagcttc agcgcacgcg tgtaggtgtc gatggtgtcg ttgagcaact tggcgcgctg
     1441 atcgaggccg cgcagttcga aataggtcga cgcgaggctt gactgaaggc tgaggcgcag
     1501 cgactcgaga tcgtcggcac tggcttcttc ttgcgagcgg cccgcgctca cctgattgcg
     1561 caccttgccc cacaaatcaa ggtcataacc tataccgaca tcggccgtcg ccgaattgta
     1621 agtcgaaggc tgatccgtgc cgcgcaacgg ccggttatcc gactgccgtt gccgcgaaac
     1681 atcggcttcg gcgccaatag taggaaagag ccctgaacgc gcttcctgaa ggtacgcgct
     1741 ggcttcgtca tgccgggcga ccgctgccgc cacattcgga ttggccgtgg cgatcttcgc
     1801 ttcgagcccg ctcaataccg gatcgcgata catggtccac cagctatcac gcgggatgcg
     1861 gtcggccggt ttggccggct gccacgggcc agcttccttg aaggtggtgg gaatcgccgt
     1921 ggcggccacc ttgtaggtgg gcgcgaacga acacgcgttc agcgcgatag cgcagactgc
     1981 cgctaccagg agacggcgct taaccatgct cgtgctccgg ctgcccggtc gccgcggtgg
     2041 cgacggccgt cgcggcgctg cgtacaagtt cgccttctgc aagcgagtcc ggcggg
//
LOCUS       DATGBK010001880         1773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_91535, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001880 DATGBK010000000
VERSION     DATGBK010001880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91535"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VKJ77_26485"
     CDS             <1..227
                     /locus_tag="VKJ77_26485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HMC48889.1"
                     /translation="GAIDEDIAILRELDILVDRDDAGYMLQIFSKPLADRPTVFFEFI
                     QRRGSLSFGKGNFKALFVSIEAEQAKRGNL"
     gene            complement(631..>1773)
                     /locus_tag="VKJ77_26490"
     CDS             complement(631..>1773)
                     /locus_tag="VKJ77_26490"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HMC48890.1"
                     /translation="RVLELGSTVAGPAAGRLLADLGAEVIKIEPPEGDVLRTWGTPAP
                     DGSSWWFKSHNRNKRFAMLDLHAQADRAIVRELARQADVVLENFRPGRMAEWGLGYDD
                     LRAINPRLVYAAISGYGQDGPYAARAGFGNIAESMGGLRFISGFADRPPVRPGISLGD
                     ELAGLYCVVGILAALRARDRDGVGDFVDVSLLESCLNLMQGALPEYGATGAVRERQGN
                     SLGTTAPSNIYPTKDGRWIAIGANANAIFKRFCVAIGRPELSTDPRFAGNRERTDNAD
                     ALDAVVEEWTLTLDCAAATSLLTGAGVPAGPINSIADIVADEHVRARGVIVQLEDDAH
                     NVVATTVPVPRFRRRPAVTGHAARAIGADTQAVIREGFRERRPTSG"
BASE COUNT          355 a          571 c          522 g          325 t
ORIGIN      
        1 ttggtgccat cgacgaagac atcgcgatat tgcgggaact cgacattctt gtggatcgcg
       61 acgatgcggg ctacatgctg cagatcttct cgaagccgct ggccgaccgc ccgaccgtat
      121 tcttcgagtt tattcagcgc cggggcagtc tgtcgttcgg taaggggaat tttaaggcgc
      181 tcttcgtttc aatcgaagcc gaacaggcca aacgcggcaa tctctgagcg tggggccggg
      241 ctcctaacac aaaacaaaca caaaggaacg agagctagct cacattcgct tttacgggct
      301 ccgataaaac caacatgaga gatcgctcgg ttacggactt catggttggc gccctcgcct
      361 gtatttcggt ccttggcctc tatgcggtca cgcgtgaagc cgttgcgaca cccacccgtc
      421 gtcgcgcaaa cgaaaacacc acgatgcacc gccgggcaac ggatgttgcg aaatgggatc
      481 tcccgcgcca agcgacgtac cgcgatacac ccgaagattt ctgtcgccac tgcgcgggct
      541 cgggcgtctg cgattcgtgc ggaccgcaat cgtgccgcat ctgccgcggc accggaatcg
      601 caccccacga tgcgagctta ctgccgcgcc tcagcctgat gtgggacggc gttctctaaa
      661 gccttcgcga ataaccgctt gcgtatccgc gccgattgcg cgcgcggcgt gacccgttac
      721 cgccgggcgc cggcgaaaac gtggaaccgg caccgtcgta gccacgacat tgtgtgcatc
      781 atcttctagc tgcacgatca cgccgcgagc gcgaacgtgt tcgtcggcga cgatgtcggc
      841 gatagaattg attggacccg ccggcacacc ggcgcccgtc agcaacgacg tggccgctgc
      901 acagtccagg gtgagcgtcc attcttcgac gaccgcatcg agcgcatccg cattgtccgt
      961 gcgctcgcga ttgccggcga accgcggatc ggtggagagt tcgggacggc cgatcgccac
     1021 gcaaaaacgt ttaaagattg cattcgcgtt tgcgccgatt gcaatccagc gcccgtcttt
     1081 ggtcggatag atattgctgg gcgcggtcgt gcccagcgaa ttcccttgcc gttcgcgtac
     1141 ggcacccgtt gcgccgtatt caggcaacgc gccttgcatg agattcaggc acgactccaa
     1201 gagcgacacg tcaacgaaat cgccgacgcc gtcgcgatcg cgcgcgcgta acgcggcaag
     1261 aataccgacg acacaataga ggccggctaa ttcatcgccc aggcttatgc ccggacgcac
     1321 gggcggacgg tccgcaaagc cgctaataaa acgcaatcca cccatcgact cggcaatatt
     1381 tccgaacccg gcgcgcgcgg catacgggcc gtcctgaccg taaccactaa tcgcggcata
     1441 cactaagcgc ggattgattg cgcgcagatc gtcgtagcct aggccccact cagccatgcg
     1501 cccggggcga aaattctcaa gcacgacatc ggcttggcgc gcaagctcgc gcacgatcgc
     1561 gcgatcggct tgcgcatgca gatcgagcat cgcgaaacgt ttgttgcggt tgtgcgattt
     1621 gaaccaccag gacgatccgt ccggggccgg cgttccccac gtgcgtagca catcaccctc
     1681 gggcggctcg atcttgatga cctcggctcc gaggtccgct aacaggcgcc cggcggcagg
     1741 gccggccacg gtgctgccca gttcgagcac gcg
//
LOCUS       DATGBK010001881         1884 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_207962, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001881 DATGBK010000000
VERSION     DATGBK010001881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207962"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..562
                     /locus_tag="VKJ77_26495"
     CDS             <1..562
                     /locus_tag="VKJ77_26495"
                     /inference="COORDINATES: protein motif:HMM:NF013357.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003796 - lysozyme activity [Evidence
                     IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA];
                     GO_process: GO:0016998 - cell wall macromolecule catabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GH25 family lysozyme"
                     /protein_id="HMC48891.1"
                     /translation="NWPNISAAGMLRSPFHFFDPTIDGVAQANYFLTLLNNAGGLQVR
                     DLPPMLALECPASSTQSAADANCEYTGNSGWVPSSTLIQRVFDWLNTVEAATGRKPII
                     YSYPAWFADVGFTDVRLANYPLFIATFASCASVPSPWTTAAFWQYGSASSIPGTTGST
                     DLDRFVGSPTELQVFVDTIFADGFDQ"
     gene            complement(927..>1884)
                     /locus_tag="VKJ77_26500"
     CDS             complement(927..>1884)
                     /locus_tag="VKJ77_26500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48892.1"
                     /translation="QEARGDVTTAPMKRGATVATAASATGAAGNTRSATQAVPPTRRV
                     LSSAATNGSATALPPPGTPLAETFDELKARADAGDAAAASRLFQDLQQCAEAQRLGQS
                     LPAVANRMLNGNLPSSPDEIERTDRQFDRVQRGLAFQQNSAAMCAGLSPNQIAALVPT
                     TLAAAQLGDPQAADCYVGANLNAWPDVLNNPTWISDYKNSALSLANAAVQQGDWSMVG
                     LLASANAGSPRNNNMLNQVTGTDPLQAYTYAKLMSLGQPAGTTPSSRSTNALSTLSSQ
                     LTPEQIQAADAQAQSMYQQYFNAAPRQTGQVANSMQACQAGF"
BASE COUNT          327 a          577 c          571 g          409 t
ORIGIN      
        1 caattggccg aacataagtg cagcaggcat gctgcgtagc ccatttcatt ttttcgatcc
       61 caccatcgat ggcgttgcgc aagcgaacta tttcctcacg ctgttgaata acgcgggagg
      121 cttgcaggtc cgcgatttgc cgccgatgct tgcccttgaa tgtccagcgt cgtccactca
      181 gtcggccgcg gacgcgaact gcgagtacac cggtaattcg ggatgggtgc cgtcgagcac
      241 tcttatccag cgagttttcg attggctcaa caccgtggaa gctgcaacgg gacgaaagcc
      301 gatcatctac agctacccag cttggttcgc cgatgtcgga tttacggacg tacggctggc
      361 gaactatcca cttttcattg cgacattcgc gagctgcgcc tcggtgccat ccccttggac
      421 gactgcggcc ttttggcaat acggctccgc cagtagcatc cctggcacca ccggcagtac
      481 ggatctggac cgctttgttg gctcgcccac agagctacaa gtttttgttg atacgatttt
      541 tgcagacggg tttgatcagt aaccctgcag catgaaaccg ccacgcatca cgcgcgagcg
      601 acttgccgca aagccgcctc tcccgagtgg caggatgggg tcgggaggcg actctcgggc
      661 gcctgagaat cccacacgac cgcggaaaat cggttgctgc cggcgaaatc ccaatcccac
      721 agtgaaatcc gaatagccac tattttcgct tccgcacacg gcgaaaaagt gcactctgac
      781 ccctgtttcg caccctatgt tatccgcctt acagccttgg ctacgacatg tgttgggtcg
      841 cgacgtggct caataagagg atggggcaat tatccggttg aaacagataa ttccttcgtt
      901 cccttttttc gtgcctttca ctgccgtcaa aagccagcct ggcatgcttg cattgaattc
      961 gcgacctggc ccgtctgccg cggcgctgca ttgaaatact gctgatacat cgattgtgcc
     1021 tgcgcgtcgg cggcctggat ctgttcgggc gtcaactgac tcgacagcgt cgacagcgcg
     1081 tttgtcgagc ggctcgatgg cgtcgtgccc gcgggttgcc cgagactcat cagcttcgcg
     1141 taggtgtacg cctgcagcgg gtcggttcct gtcacctggt tgagcatgtt gttgttgcga
     1201 ggactgccgg cgtttgccga ggcgagcagg ccgaccatcg accaatcgcc ctgctgcacg
     1261 gcggcgttcg cgagcgataa cgcagagttc ttgtaatcgc tgatccaggt ggggttgttg
     1321 agcacgtcgg gccacgcgtt gagattggcg ccgacgtagc agtctgccgc ctgcggatcg
     1381 ccgagctgcg cggccgcgag cgtcgtcggc acgagcgccg ctatttgatt cggtgagagg
     1441 ccagcgcaca tcgccgcact gttctgttga aacgcgaggc cgcgctgtac ccgatcgaac
     1501 tgacggtcgg tgcgctcgat ttcgtcgggc gaagatggca ggttgccgtt gagcatgcgg
     1561 ttcgcaaccg ccggcaggga ctggccgaga cgctgcgctt ccgcacattg ttgcagatcc
     1621 tgaaacagac gcgaagccgc ggccgcatcg cctgcgtcgg cacgcgcctt gagctcgtcg
     1681 aaggtctccg cgagcggtgt gcccggcggc ggcagcgcgg tcgcactacc gttcgtggcc
     1741 gcactgctga gcactctgcg agtaggcggc acagcttgcg tggcgctcct tgtgtttccg
     1801 gcagcgccgg tagcgctggc cgccgtcgcc acagtcgcac cacgcttcat cggtgccgtc
     1861 gtgacgtcgc cgcgcgcttc ctgt
//
LOCUS       DATGBK010001882         1823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_323091, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001882 DATGBK010000000
VERSION     DATGBK010001882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323091"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VKJ77_26505"
     CDS             <1..421
                     /locus_tag="VKJ77_26505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48893.1"
                     /translation="DHAKWLVWHGKGRQSVSRIKALDATLLAKEGYEHSTLYWNLRRL
                     YFYIENNAGTLVNYGMRYHKGLSISSSIAESAVNLVVSHRMAKKQQMRWTDEGAHCLA
                     QVRVAVLNEEFSVKKLAVLTKTSAVANSPSARRARVN"
     gene            complement(624..905)
                     /locus_tag="VKJ77_26510"
     CDS             complement(624..905)
                     /locus_tag="VKJ77_26510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48894.1"
                     /translation="MEQPMPELKSPLAADSVDVAETLQWDYERREPVSPLPVSGALIS
                     VDGNEYVITLAPDQHANASLWRVFESIKRLEGRATGNAKRLKVAPADTN"
     gene            complement(968..>1823)
                     /locus_tag="VKJ77_26515"
     CDS             complement(968..>1823)
                     /locus_tag="VKJ77_26515"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HMC48895.1"
                     /translation="LRKNNTGLDLKQIFIGAGGAHGVVSAVSFALAPVERSTLAIFIA
                     FHTYADAALALQHSEDTFGEMLSAYEFISASALARVRQTFPALSTPFDNTGAACFALV
                     EIASAMTGLDTLFETRALEVLETLGHDGGVIDAALGASERFWRIRDSLPLAVVHDALP
                     LSFDVSFARGTLVPFLEDTGRWLAAAHAPLQCYEFGHFGDGGCHLIIAIPHALAGAYG
                     PMRQIGLRSELYERVRKFGGSFSAEHGIGPSNLAYYRKLVPEGVRTTARAIQGALDPA
                     HLMGRFRY"
BASE COUNT          373 a          550 c          549 g          351 t
ORIGIN      
        1 cgatcacgcc aagtggctgg tctggcatgg aaagggccgg caatcggtgt cccgcatcaa
       61 ggccctggat gcgacgctgt tggcgaagga aggctatgag cactcgacgt tgtactggaa
      121 cctgcgccgc ctgtacttct acatcgagaa caacgccggt acgcttgtga actatggcat
      181 gcgctatcac aaggggctat cgatcagcag cagcattgcc gagtccgcgg tgaacctggt
      241 agtcagccat cgcatggcga agaagcaaca aatgcgatgg acggacgagg gagcgcactg
      301 tctggcacag gtcagagttg ctgttctcaa cgaagaattc tcggttaaga aacttgccgt
      361 gttgaccaag acttctgcag ttgcaaactc gccaagtgcg cgccgagcgc gcgtgaattg
      421 acctcccatg gtttggttca ctctcgatgt ccggatgatc gttgagactg acaatcgctt
      481 tgcccttcag agtccggagg cgtgctcgtt ccgacaggga accatccatc ccattgatcc
      541 gtccgctttc tgggaagata tcgcggctta gcggtagtgc gtcccgcccc cttcaacgtg
      601 acaacgccgt tgtgacggtc ggatcaattc gtgtccgccg gcgcaacctt gagccttttc
      661 gcattgccag tagcccgtcc ttcaagccgt ttgatgctct cgaacacgcg ccataatgac
      721 gcgttcgcat gctgatcggg cgccagcgtg atgacgtatt cgttaccgtc gacggaaatc
      781 agcgcgcccg acactggcag cgggctaact ggttcgcggc gctcgtagtc ccattgcaat
      841 gtttcggcga catcgaccga atctgcggct aaaggggatt tcaattcagg catcggttgc
      901 tccaaaacag tggaattcgt gagtcggtgc gtggcgtgac gagctgaccg gttcaagcga
      961 tagcgcgcta ataccgaaag cgccccatca gatgcgcggg gtccagcgcg ccctgaatgg
     1021 cgcgcgccgt ggtccgcacg ccttccggta ccagcttgcg gtagtacgcg agattcgacg
     1081 gtccgatccc atgctcagcg ctgaaactgc cgccgaactt cctgacccgc tcgtacagtt
     1141 cgctgcgcag gccgatctgc cgcattggtc cataagcgcc cgccaaggca tgcggaatcg
     1201 cgatgatcag gtgacagccg ccatcgccga aatgaccgaa ctcgtaacac tgcaagggcg
     1261 catgcgccgc cgcgagccag cgcccggtgt cctcgagaaa cggcacgagc gtgccgcgtg
     1321 caaaggagac atcgaaggaa agcggcaggg cgtcgtgcac cacggcgagc ggcaaactgt
     1381 cgcgaatccg ccaaaaccgt tcgctcgcgc ccagcgccgc gtcgattacc ccgccatcgt
     1441 ggccgagcgt ttcgagcacc tccagcgcgc gcgtctcgaa caacgtgtcg agacccgtca
     1501 tcgcactggc tatttcgacc agcgcaaaac acgcggcccc tgtgttgtcg aatggtgtgg
     1561 aaagcgccgg gaacgtttgg cgtacccggg cgagcgcgct cgctgagatg aattcgtacg
     1621 cacttagcat ctcgccaaac gtgtcttcgg aatgctgcag cgctagcgcg gcgtcggcgt
     1681 aagtatggaa cgcgatgaag atagccaggg tcgagcgttc gacgggcgcg agcgcgaatg
     1741 agaccgcgct gaccacgcca tgtgcaccgc cggcgccgat gaaaatctgc ttcagatcca
     1801 gtcccgtatt gtttttgcgc agc
//
LOCUS       DATGBK010001883         1800 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_323120, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001883 DATGBK010000000
VERSION     DATGBK010001883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323120"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..620
                     /locus_tag="VKJ77_26520"
     CDS             <1..620
                     /locus_tag="VKJ77_26520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine amidotransferase"
                     /protein_id="HMC48896.1"
                     /translation="ITHMPSHEAQEAFPSTLDGLLAYDAIILSDIGANTLLLHPDTWV
                     KSQRTPNRLKLLREYVEAGRGLMMIGGYLSFQGINGSARFRNTPVEDVLPVTCLPYDD
                     RVEVPEGFTANVVASHPVVEGLGTQWPHLLGYNEVQLKAGATLIATVPETGHPLLVAG
                     THGRGRTLAWTSDMSSHWLPPEFSAWEGNARLWTNCLDWLTSDEQ"
     gene            636..1547
                     /locus_tag="VKJ77_26525"
     CDS             636..1547
                     /locus_tag="VKJ77_26525"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019200 - carbohydrate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HMC48897.1"
                     /translation="MNANEARVCIIGNAAIDLVFRVDHLPLAGETSLAIDTSQDFGGK
                     GANQAVMAQRAGAQVQLFAALGNDADGDRFLAHLVEEGIDTHHIARLPCMTDMSIVTV
                     DQRGENTIVTRNDAAARYAPSPSAVLDATRSGDWIAMQGNLSEAITAELLRHAHAGER
                     RTLLNPGPVCFDCRPLLNHVDILVVNRVEAATLTLLQNPEDAARSLLESGAGDVIVTL
                     GSEGVLWFRPGRMALIPATRANAIDTVGAGDAFCGALLAALAQHIPMTVSLQRAQAAA
                     AFAVARSGTQAAFPNRAELFALFNSLT"
     gene            1559..>1800
                     /locus_tag="VKJ77_26530"
     CDS             1559..>1800
                     /locus_tag="VKJ77_26530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011809241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BtpA/SgcQ family protein"
                     /protein_id="HMC48898.1"
                     /translation="MNTSSGVGRGRTDCVEQIFGCPRGVVIGVIHCPAFPGSPRYQGA
                     SSEAMYSAALADAVAYAKGGVDGLIVENHGDVPFSKP"
BASE COUNT          331 a          539 c          561 g          369 t
ORIGIN      
        1 cgatcacgca tatgccgagc cacgaagcgc aggaagcctt cccctccacg cttgacggat
       61 tgcttgctta tgacgcgatc attctctcgg acattggtgc aaatacgttg ttgctgcatc
      121 ctgatacgtg ggtcaagagc cagcgcacgc cgaaccgtct caagctgctg cgagagtatg
      181 tcgaggccgg acgaggcttg atgatgatcg gcggttacct gagcttccag ggcatcaacg
      241 gcagcgcacg gtttcgcaat acgccggtcg aggacgtgtt gccggtcacc tgcttgccct
      301 acgacgatcg tgttgaagtt ccggaagggt tcaccgcgaa cgtggttgct tcgcacccgg
      361 tcgtcgaagg gcttggaacg cagtggcctc acttgctggg ctataacgaa gtgcaattga
      421 aagcgggtgc aacgctgatc gcgacggtac ccgagactgg ccacccgctg ttggtcgcgg
      481 gtacgcacgg ccgcggacgc acgcttgcct ggaccagcga catgtcgagt cactggttgc
      541 caccggagtt ctccgcctgg gaaggcaacg cgcggctgtg gacgaactgt cttgactggc
      601 taacctcgga tgaacaatga tcccagagtc gcctcatgaa cgcgaatgaa gcgcgcgttt
      661 gcattatcgg caatgcggcg atcgacctgg tgtttcgggt cgatcacttg ccccttgccg
      721 gtgagacttc gcttgctatc gatacgtcgc aagacttcgg cggcaagggt gcgaatcagg
      781 cggtgatggc acaacgcgcg ggcgcccagg tgcagttgtt tgctgcgctc ggcaacgacg
      841 ccgacggcga tcggttcctg gcgcatcttg tggaagaagg tatcgatacc catcatatcg
      901 cccgcttgcc atgcatgacg gatatgtcaa tcgttacggt cgaccagcgc ggcgagaata
      961 cgatcgtgac tcgcaacgat gcagcggctc gctatgcgcc ctcgccgagc gcggtactcg
     1021 atgcaacccg tagcggcgat tggatcgcca tgcagggcaa cctgagcgaa gccatcacag
     1081 ccgagctctt gcgtcatgcg catgcgggcg aacgtcgtac cctgctcaat cccggaccgg
     1141 tttgctttga ttgccgtccg ttgctgaacc acgtcgacat tcttgtggtc aatcgcgtag
     1201 aagccgcgac gctgaccctg ctgcaaaacc cagaggacgc ggcgcgttcg ctgttggagt
     1261 cgggtgcggg cgatgtcatc gtcacgctgg gttccgaagg cgtcctctgg ttccgcccgg
     1321 gtcgcatggc gttaataccg gcgacgcggg ccaacgccat cgacaccgtg ggtgccggcg
     1381 acgctttctg cggtgccctc ctcgcggcgc ttgcgcagca tatccccatg acagtttcct
     1441 tgcagcgtgc gcaagccgcc gctgcgttcg ccgtcgcaag aagcggcacg caggccgctt
     1501 tcccgaaccg cgcagaattg ttcgcgctat tcaactctct aacctgaatt caatcgatat
     1561 gaacacttca tctggagttg ggcgcggacg caccgattgc gtagagcaga tttttgggtg
     1621 cccgcgcggc gttgtgatcg gtgtgatcca ctgcccggca tttcctggtt cgccgcgata
     1681 tcagggcgct tcgagcgagg cgatgtacag cgccgcactc gccgatgccg tggcatacgc
     1741 gaaaggcggc gtcgacggac tgatcgtcga gaatcacggc gacgtgccgt tttcgaagcc
//
LOCUS       DATGBK010001884         2968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_207985, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001884 DATGBK010000000
VERSION     DATGBK010001884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2968
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207985"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..888)
                     /locus_tag="VKJ77_26535"
     CDS             complement(<1..888)
                     /locus_tag="VKJ77_26535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HMC48899.1"
                     /translation="MALATRCPHCETVFRLDPHLLAPHDGRVRCGHCQEIFDAAHYQF
                     DRDEIIMVALAATTPNYGVDPASPWAEKSSAEVSGDKRDALGIPLHPFVPNTALAPQV
                     EPEPTPVARAEPLAGLAAAEAASRVRAESDIPGEGRTESPWQADKRAEADARVEVPAD
                     APARTEPRADSFVGRSEGDLLNESRNDPFIGRTENEALNESRSDESRAESRTEPFVGW
                     STPRVEPETPELRRPVDTTTRSEPAPLGTTPAAPWATGPAEPSFGSAAASSGPAFEPG
                     FEPASEPFPVIRETRAPARS"
     gene            complement(934..1836)
                     /gene="prmA"
                     /locus_tag="VKJ77_26540"
     CDS             complement(934..1836)
                     /gene="prmA"
                     /locus_tag="VKJ77_26540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014192292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HMC48900.1"
                     /translation="MSYRELIAELDREHAEALSDALLELGALSVSVEDADADTPDEQP
                     LFGEPGLTPDQKAWNRSRVVALLADAADPAVLLAAAANEIGLKDAPAFTLRDVEDQDW
                     VRLTQSQFDPIPIGKRIWVVPSWHAAPDPGALVLELDPGLAFGTGSHPTTRLCMEWLE
                     QSVEQNQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNYADVTYG
                     LPDDCPEGQFDIVVANILSNPLKLMASMLSARVKPGGRIALSGILARQADEVAAVYAH
                     WIDISVWREHEGWVCLAGTRRESL"
     gene            complement(1858..>2968)
                     /locus_tag="VKJ77_26545"
     CDS             complement(1858..>2968)
                     /locus_tag="VKJ77_26545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017777083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HMC48901.1"
                     /translation="AERVEQSGFTFIGPRPETIRLMGDKVSAKQTMIKTGVPCVPGSE
                     GALPDDPKEIVKIARAVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF
                     GNPQVYMEKFLENPRHIEIQILADSFRNAIWLGERDCSTQRRHQKVIEEAPAPGIARR
                     LIERIGDRCADACKKMGYLGAGTFEFLYENNEFYFIEMNTRVQVEHPVTELITGVDIV
                     QEQIRIAAGEKLAFRQKDIVFRGHAIECRINAEDPFKFTPSPGRLTSWHMPGGPGIRV
                     DSHAYNGYFVPPNYDSMIGKLISYGATREQAINRMRIALSEMVVEGISTNIPLHREMM
                     IDAKFVEGGTSIHYLENKLAARKAAAAVAAEDAAQ"
BASE COUNT          525 a          924 c          936 g          583 t
ORIGIN      
        1 cgaacgggcc ggcgcgcgcg tttcacggat aacggggaac ggctcagaag cgggctcaaa
       61 accgggctca aaagcgggcc cagacgacgc agccgcgctg ccgaagctcg gctcggcggg
      121 gcctgttgcc cacggcgcag ccggcgtggt accaagcggg gcgggttcgg agcgagtggt
      181 ggtatcgact gggcggcgga gctcgggcgt ttccggctcc acacgcggtg tgctccagcc
      241 gacgaacggt tctgtacgcg attcagcgcg tgactcgtcg gagcgtgact cgttaagcgc
      301 ttcgttttca gtgcggccaa tgaagggatc attgcgcgat tcattcagca aatcgccttc
      361 gctacgaccc acgaaagaat cggcgcgcgg ttcggtgcga gcgggggcgt cggcgggtac
      421 ttcaactcgc gcgtccgcct cagcgcgttt atccgcttgc cacggggatt cggtgcgtcc
      481 ttcccccgga atatcgctct ccgcgcgcac acgcgacgcc gcttcagcgg cagcgagccc
      541 cgcgagcggc tcagcgcgcg caaccggagt gggttccggc tcaacctgag gggcgagggc
      601 ggtattgggg acgaacgggt gcagagggat gcctagcgcg tcacgcttgt cgccagagac
      661 ctcggcactc gacttctctg cccacgggct tgccggatct acgccgtaat tgggcgtggt
      721 tgcggccagc gcgaccatga tgatttcgtc tcggtcgaac tggtaatgcg ctgcgtcgaa
      781 gatttcctgg caatgaccgc aacgcacgcg gccgtcgtgc ggcgcgagta gatgcgggtc
      841 aagacggaac accgtttcgc agtggggaca gcgggttgcc agcgccatat gtagccgaag
      901 gccagaggcc ggtagatgga cgatggcgct attctaaagg ctttcgcggc gggtacccgc
      961 aagacacacc cagccttcgt gttcgcgcca tacgctgatg tcgatccagt gtgcgtagac
     1021 cgcggcaact tcgtcggcct ggcgcgccag aatgcccgat aacgcaatgc gtccgcccgg
     1081 tttcacgcgt gctgaaagca tcgacgccat cagcttcagc gggttcgaca aaatgttcgc
     1141 taccacgatg tcgaattgcc cttcggggca atcgtcgggc aggccgtagg tgacatcggc
     1201 gtaattgcgc tcgctatttt gacgcgcgga ttccacggct tgcggatcga tatcgatacc
     1261 gatcaccggg ttcgcgccgc atttcttcgc caggatcgcg aggatgccgg aaccgcaacc
     1321 gtaatcgagc acggactggt tttgctccac cgattgctcg agccattcca tgcacagccg
     1381 tgtagtcgga tggctgccgg tgccgaacgc gagacctgga tcaagttcga gcacgagcgc
     1441 gccgggatcg ggcgctgcgt gccacgacgg cacgacccag atccgcttgc cgataggaat
     1501 aggatcgaac tgggattgcg tgaggcgtac ccagtcctga tcttcgacat cgcgcagcgt
     1561 aaaggccggc gcgtctttca agccgatttc attggccgcc gccgcaagca acacggcggg
     1621 gtcggcggcg tccgccagaa gggcgaccac gcgcgagcgg ttccacgcct tctggtccgg
     1681 cgtgaggccg ggttcgccga acagcggctg ctcgtcgggg gtatcggcgt cggcatcttc
     1741 caccgatacc gacagcgcgc ccaactccag cagcgcatcc gacaacgctt ccgcgtgttc
     1801 ccggtccagc tcggcgatca attcccggta gctcatcttg aagccttact aattgcgtta
     1861 ttgcgccgcg tcttctgcag cgacggcggc tgccgccttg cgcgcggcga gcttgttttc
     1921 gaggtaatgg atgctcgtgc cgccttcgac gaacttcgcg tcgatcatca tttcgcgatg
     1981 cagcgggatg ttggtcgaga tgccttccac gaccatttcc gataacgcaa tgcgcatgcg
     2041 gttgatcgcc tgctcgcggg tcgcgccgta cgagatcagc ttgccgatca tcgagtcgta
     2101 gttcggcggg acgaaatagc cgttgtacgc atgcgaatcg acacgaattc ccggaccgcc
     2161 gggcatatgc catgacgtga gacgtcccgg cgatggcgtg aacttgaacg ggtcttcggc
     2221 gttgatccgg cactcgatcg cgtgaccgcg aaacacgatg tccttctggc ggaacgcgag
     2281 cttttcgccg gcagcaatac ggatctgttc ctgcacgata tccacgccgg tgatcagctc
     2341 cgtcaccgga tgctcgacct gcacgcgcgt gttcatttcg atgaaataga actcgttgtt
     2401 ctcgtacagg aattcgaacg tacccgcgcc gagataaccc atcttcttgc aggcgtcggc
     2461 gcaacgatcg ccgatccgct cgatcaggcg tcgcgcaata cccggcgccg gcgcttcttc
     2521 aatcaccttc tggtgacggc gctgcgtgga gcaatcgcgt tcgcccagcc agattgcgtt
     2581 acggaacgag tcggcaagaa tctggatttc gatgtgccgc gggttctcca ggaatttctc
     2641 catgtagacc tgcggattac cgaatgcacg gccggcttct tcacgggtca tgttcaccgc
     2701 gttcaccagc gccgcttcgg tgtgcaccac gcgcatgccg cgaccaccgc cgccgcctgc
     2761 cgccttgatg attaccggat acccaacggc gcgtgcaatc ttcacgattt ctttcggatc
     2821 gtcgggcaat gcgccttcgg aacccgggac gcacggcacg cccgtcttga tcatcgtttg
     2881 tttggcggag actttgtcgc ccatcaggcg aatagtttcc ggacgcggtc cgatgaacgt
     2941 gaagccggat tgctcgacgc gctccgca
//
LOCUS       DATGBK010001885         1539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_115127, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001885 DATGBK010000000
VERSION     DATGBK010001885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115127"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1305
                     /gene="guaD"
                     /locus_tag="VKJ77_26550"
     CDS             <1..1305
                     /gene="guaD"
                     /locus_tag="VKJ77_26550"
                     /EC_number="3.5.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020069015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008892 - guanine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006147 - guanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanine deaminase"
                     /protein_id="HMC48902.1"
                     /translation="LLTFRDDPALSDDNAVYETDGLLLVEEDRVVAAGAYAALRNAIA
                     PDAIVRDMRDKLIVPGFIDSHIHYPQTDMIASPAPGLLPWLNTYTFPTERKFEDPAYA
                     RETASFFIDELLACGTTTALVYCTVHKQSADAFFSESESRNLRMIAGKVLMDRNCPEY
                     LRDTAQSGYDDSAELIARWHGRGRQEYALTPRFAPTSTEEQLEACAVLARKHQDVYIQ
                     SHVAENTDEIKWVESLFPGHRSYLDIYDHYDLLRQRAVYGHCIYLDDTDRQRMAETGA
                     VASHCPTSNLFLGSGLFDIEKAGAAKMPVALATDVGGGTTFSMLQTMGEAHKIARLTG
                     HHLTAARMFWLATTGAAQVLDMSDRVGTLKPGSEADFVVLDPAGTPLLDRRTTRAESL
                     EELLFAFAMLGDDRAVFETYAAGKCVHRRETRRGTVPKLAAA"
BASE COUNT          299 a          457 c          485 g          298 t
ORIGIN      
        1 ctactcactt tccgcgacga ccccgctctt tccgatgaca acgcagtgta tgaaaccgac
       61 ggcctgttgc tggtggaaga ggaccgcgtg gtggcggcgg gcgcgtatgc ggcgctacgc
      121 aacgccatcg cgcccgatgc aatcgtgcgg gacatgcggg acaagttgat cgtgccgggt
      181 ttcatcgact cgcacattca ctatccgcag accgacatga tcgcctcgcc cgcgccgggt
      241 ctgttgccgt ggttgaacac gtacacgttt ccgaccgaac gcaagtttga agacccggcg
      301 tacgcgcgcg agacggcgag ctttttcatc gatgaactgc tggcctgcgg cacgaccacg
      361 gcactcgtgt actgcacggt ccacaagcaa tccgccgatg ccttctttag cgaaagcgag
      421 tcgcgcaacc tgcgcatgat cgcgggcaag gtgctgatgg atcgcaattg cccggagtat
      481 ctgcgcgaca cggcgcaatc aggctatgac gacagcgccg aactcatcgc gcgctggcat
      541 ggtcgcggac ggcaggaata cgcgctgacc ccgcgtttcg cgccgacctc gacggaggag
      601 caactcgaag cctgtgcggt gctcgcgcgc aagcaccagg acgtgtatat ccagagccac
      661 gttgccgaaa acaccgatga gatcaagtgg gtcgaaagcc tgtttccggg gcatcggagc
      721 tatctggata tctacgatca ctatgacttg ctgcgtcagc gcgcggtcta cggccattgc
      781 atctatctcg acgataccga ccgccagcgc atggctgaaa ctggtgcggt ggcgtcgcat
      841 tgcccgacat cgaatttgtt cctcggcagc ggcttgttcg atatagaaaa ggccggggct
      901 gcgaagatgc cggtggcgct tgcaaccgat gtaggcggcg gcacgacgtt ttcgatgctg
      961 caaaccatgg gcgaagcgca caagatcgcg cgcctgaccg gtcatcacct gaccgcggcg
     1021 cggatgttct ggctggcgac cacgggcgcg gctcaagtgc tcgatatgtc ggaccgcgtg
     1081 gggacgctga agcctggcag cgaggcagat tttgttgtgc tggacccggc cggtacgcct
     1141 ctgctggacc gccggaccac gcgcgcggaa tcgctggaag aactgctctt cgcgttcgcg
     1201 atgctcggcg acgaccgcgc cgtgttcgag acgtatgcgg cagggaaatg cgtgcatcgg
     1261 agagagacgc gacgcgggac ggtgccgaag ttggcagcag cttgaaggag tagcgattgg
     1321 gtctcgcgct taaagcgacg atgactctcc cggtactgcc tggacataac gagcgcgccg
     1381 agtttttgcc cggcgcgctc gttgtcttta gcgcggccca cttccgcatc tggactttcg
     1441 attaactgac atccttcgcg gggcggttcg tcgcttcgaa aaaccaattc gcatagctga
     1501 cagtaattcc actgaggatt accgtcagct gtacgaatt
//
LOCUS       DATGBK010001886         3741 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_323131, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001886 DATGBK010000000
VERSION     DATGBK010001886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3741
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323131"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VKJ77_26555"
     CDS             <1..286
                     /locus_tag="VKJ77_26555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009521626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster binding
                     domain-containing protein"
                     /protein_id="HMC48903.1"
                     /translation="GGPRGGASFVASLARSGIDVQVPGDVSLLEALEAAGVHADSQCR
                     GGACGVCKTGVLEGCPEHRDYFLSAAERSEGRHIMPCVSRAIGERLVLDL"
     gene            358..1407
                     /locus_tag="VKJ77_26560"
     CDS             358..1407
                     /locus_tag="VKJ77_26560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012345209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3445 domain-containing protein"
                     /protein_id="HMC48904.1"
                     /translation="MTFKPDETFRDDFSYNNSDEAILRFPFPFHEDRYMYSVNIEPHV
                     AGGPSDAFQATFDVDEHYVAECRDRALTLAADPLRCQVLPHMQAAEWDTLELLMESLS
                     RDYPQHFRLTRDGEWWTWINGPLGIADRFRFGDASTLPLPPFEYITRQAQGDFCLLDH
                     RDDNLFMDGGMVTSQADWSLDFDLGMSFVEWHAPVPLAHQMGVFDRALQFLLRLQWGK
                     PVRRLNWTMTVNPRLDTSPENYPHWGPDRASITPENVGQKLHLRVELQTLFRLPRSNG
                     VLFGVRCYLIRLDELVRVSKWARRMHRVLQSLPDELAAYKGLARFRGTAVTWLAQYDD
                     GAPTAAGTAAETLAA"
     gene            1464..2873
                     /locus_tag="VKJ77_26565"
     CDS             1464..2873
                     /locus_tag="VKJ77_26565"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC48905.1"
                     /translation="MTMQATKMWGEERYWGLGFEWDPQWLLDDEQKDLQTQLIALCQT
                     TLRANAIESDKGFVYPRKNFEALAKLGLLGLIVPKELGGRGQSHLCAAMIVETIARYG
                     CPSTAMCYTMHLGATAAALFRHHANPALRDILTRIDRDVLIGTLSYSDPETGSHFWYP
                     MSSRAERVDGGWRVNKKASWTTSGGFADWYIIQTTSPDFGGDYSNLSCFLVKKDQVKS
                     DPANWDGLGLRGNQSGPISIEGVVLPDTGLVGPVGDGAKSNDEVVDPFFLTCSSACWN
                     GIALATIDIAKNHTTRKTHADVGMRVADYPTIQDYVGEAIIDTNASRSYVYLAAQSLD
                     ALTGNCDWDLHADTDYLPRSRMLHWLWQVKFFAAKNVSHVTDKMLHACGGTGYKPGLQ
                     IERLLRDGKAGWVMGPTNEVLRQFVGKSALLGFEVLDYWNQSVNQRVLSNELKKMSRD
                     EKMAFANGLLSELQTAAAA"
     gene            2870..3355
                     /locus_tag="VKJ77_26570"
     CDS             2870..3355
                     /locus_tag="VKJ77_26570"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HMC48906.1"
                     /translation="MMDSREFRTTLGHFPTGVAVVTTHDADFGPVGVTVSSFNAVSLE
                     PALVLFSIGKTSPCHRSFDAAEGIAIHVLGHDQHELSTRFARGGTEKWAGLDYVRGKS
                     GSPLLSDALAIFECHPYARYDGGDHTIFVVEVQSMRARDGEPLVFCRGSYRALAETAA
                     C"
     gene            3349..>3741
                     /locus_tag="VKJ77_26575"
     CDS             3349..>3741
                     /locus_tag="VKJ77_26575"
                     /inference="COORDINATES: protein motif:HMM:NF020905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1989 domain-containing protein"
                     /protein_id="HMC48907.1"
                     /translation="MLNEVLSGELPEFDLPPFGEDLADDLTDKPAPRHADPLERARLA
                     EVLAEYRVAAGSARTLSVAAGQYVQVIDVEGRQCSDLLAFDAAALARGEALALDPAVT
                     RTLMGRDVPQPGLHAKYYDARMQAMLEVV"
BASE COUNT          683 a         1147 c         1223 g          688 t
ORIGIN      
        1 cggtggcccg cgcggcggtg cgtcgttcgt cgccagcctc gcgcgcagcg gcatcgacgt
       61 ccaggtgccc ggcgacgtgt cgttgctcga agccctcgaa gccgccggcg tgcacgcgga
      121 cagccaatgt cgcggtgggg cttgcggcgt ttgcaagacg ggtgtgcttg agggctgccc
      181 ggagcaccgc gactatttcc tctcggcggc ggagcgcagc gaaggacggc acatcatgcc
      241 gtgcgtgtcg cgcgctatcg gcgagcggct ggtgctggac ctgtagagcc gcagttccgt
      301 gctgcgttgc ccgagcagcg tcgacaagac acccattcac gggggatcga gatgaccatg
      361 accttcaagc ctgacgagac ctttcgcgac gacttcagct ataacaacag cgacgaggcg
      421 atcctgcgtt tcccgtttcc gtttcacgaa gatcgttaca tgtacagcgt caacatcgaa
      481 ccgcatgtgg caggtggtcc gtcggacgca ttccaggcca ccttcgatgt cgatgaacac
      541 tatgtcgccg aatgccgcga ccgcgccctg acgcttgcgg ccgacccgct gcgttgtcag
      601 gtcctgccgc acatgcaggc ggccgaatgg gacacgctcg agctgctgat ggaaagcctg
      661 tcgcgtgact atccgcagca cttccgcctg acacgcgacg gcgagtggtg gacgtggatc
      721 aacggcccgc tcgggatcgc ggaccgcttc cgtttcggcg atgcatcgac gctaccgctg
      781 ccgccgttcg agtacatcac gcggcaggca cagggcgatt tctgcctgct cgaccatcgg
      841 gacgacaatc tcttcatgga cggcggcatg gtgacgtcgc aggcggactg gtcgctcgac
      901 ttcgatctgg gcatgagctt cgtcgaatgg catgcgcccg tgccgctcgc gcaccagatg
      961 ggcgtattcg accgcgcatt gcaattcctg ctgcgcctgc aatggggcaa gccggtgcgg
     1021 cgcctcaact ggacgatgac ggtgaatccg cgcctcgata cgtcgccgga gaactatccc
     1081 cattggggtc ccgaccgcgc cagcatcacc cccgaaaacg tcgggcaaaa actccatttg
     1141 cgggtcgaat tgcagacgct cttccggttg ccgcgcagca acggggtgct gttcggcgtg
     1201 cgctgttacc tgatccgcct ggacgaactg gtgcgggtga gcaagtgggc gcggcgcatg
     1261 caccgcgtgc tgcagtcgct gccggatgaa ctcgcggcat acaagggtct cgcgcggttt
     1321 cgcgggaccg cggtgacgtg gcttgcccag tacgacgatg gcgcacccac cgcagcagga
     1381 accgcagcgg aaaccctggc tgcctgagta caccgcgagg ctggatcgaa ggaccgaatt
     1441 ttctgccatt caaggactct gtcatgacga tgcaagcaac gaagatgtgg ggcgaagagc
     1501 gctattgggg tctcggtttt gaatgggacc cgcaatggct gctcgacgac gagcagaagg
     1561 acttgcagac gcaactgatc gcgctgtgcc agacgacgct gcgcgccaac gccatcgaaa
     1621 gcgacaaggg tttcgtttat ccgcgcaaga atttcgaagc actggcaaaa ctcggcctgc
     1681 tcgggctgat cgtgccgaag gaactcggcg ggcgcggcca gagtcacctg tgtgcagcca
     1741 tgatcgtcga gacaatcgct cgctacggtt gcccgtcaac cgcgatgtgt tacacgatgc
     1801 acctcggcgc cacggccgct gcgctgtttc gccatcacgc gaacccggcg ctgcgcgaca
     1861 tcctgacgcg tatcgaccgc gacgtgctga tcggcacgct atcgtattcg gatccggaga
     1921 cgggctcaca tttctggtat ccaatgtcgt cgcgggcgga gcgcgtggac ggcggctggc
     1981 gcgtcaacaa gaaagcgtcg tggacaacct cgggcggctt tgctgactgg tacatcatcc
     2041 agaccaccag tcctgatttc ggtggcgact actcaaacct gagctgcttt ctcgtgaaga
     2101 aggatcaggt caagtccgac cctgcgaact gggacggcct tgggttacgc ggcaaccagt
     2161 cgggcccgat ctcgatcgaa ggggtggtgc tgccggatac cggcctggtc ggcccggtcg
     2221 gcgacggcgc gaagtccaac gacgaagtgg tcgatccgtt cttcctgacg tgttcgtcgg
     2281 cgtgctggaa cggcatcgcg ctcgccacca tcgacatcgc gaagaatcac accacgcgca
     2341 agacccacgc cgacgtcggc atgcgcgtgg ccgactatcc gaccatccag gactatgtgg
     2401 gcgaagcgat catcgacacc aatgcgagcc gctcgtacgt gtatcttgct gcgcaatcgc
     2461 tcgacgcgct gacgggcaat tgcgactggg acctgcatgc ggacacggac tacttgccgc
     2521 gctcgcggat gctgcactgg ttgtggcaag tgaagttttt tgccgcgaag aatgtctcgc
     2581 acgtgaccga caagatgctg cacgcgtgcg gcggcacagg ctacaagccg ggcctgcaga
     2641 tcgagcggct gctgcgcgac ggcaaggccg gctgggtaat ggggccgacc aatgaagtgc
     2701 tgcggcagtt cgtgggcaag tcggcattgc tcggcttcga ggtgctcgac tactggaatc
     2761 agtcggtcaa ccagcgtgtg ctttcgaacg agctgaagaa gatgtcccgc gacgaaaaga
     2821 tggccttcgc caacggtctg ctgtccgaac tgcagaccgc agcggcggca tgatggattc
     2881 gcgcgagttc cgcacgacgc ttggtcattt cccgaccggc gtcgcagtcg tgaccacgca
     2941 cgatgccgat ttcgggccgg tgggtgtgac cgtcagttcg ttcaacgcgg tatcgctcga
     3001 gccggcgctt gtgctgttca gcatcggcaa gacatcgccg tgccaccgtt cgttcgacgc
     3061 ggccgaaggc atcgcgattc atgtgcttgg gcacgaccag cacgaactat cgacacggtt
     3121 tgcgagaggt ggcaccgaga aatgggccgg tctcgactac gtgcgcggca agtcgggcag
     3181 tcctctgctg agcgatgcgc tggcgatttt cgaatgccac ccatacgcgc gctacgacgg
     3241 cggcgaccat acgatcttcg tggtcgaagt gcagtcgatg agggcgcgcg acggagagcc
     3301 gctggtgttt tgccgcgggt cctatcgtgc gctcgcggag acggcggcat gttgaacgaa
     3361 gtgctgtcag gcgagctgcc ggaattcgat ttgcctcctt ttggcgaaga cttagccgac
     3421 gatttaaccg ataagcccgc gccacggcat gccgatccgc tcgaacgcgc acgccttgct
     3481 gaagtgcttg ccgaatatcg cgtggccgcg gggtcggcgc gtaccttgag cgtcgcagca
     3541 gggcagtacg tgcaggtgat agacgtggaa ggaagacagt gttcggacct gctcgccttc
     3601 gacgccgcgg cgctcgcgcg cggcgaagcg ctcgcgctag accccgccgt tacgcgtacg
     3661 ctgatgggcc gcgatgtgcc gcaacccggc ctgcatgcga agtactacga cgcgcgcatg
     3721 caggcaatgc tcgaagtcgt g
//
LOCUS       DATGBK010001887         1561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_138220, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001887 DATGBK010000000
VERSION     DATGBK010001887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138220"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..846
                     /locus_tag="VKJ77_26580"
     CDS             196..846
                     /locus_tag="VKJ77_26580"
                     /inference="COORDINATES: protein motif:HMM:TIGR00731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HMC48908.1"
                     /translation="MAKSATHQTDKLTIETRDRAGTTAAQAVRREGKIPGVLYGHGEP
                     TPIAIEIKALEAVLLRGKSHVLEATVGGKHDSVLLRGVQRHPVTHKPIHVDFQRVIKG
                     EAVTATLPVVITGVSPAVKEGAVMDLVTRSIDVKGPSDKLPDNITIDVSEMGVHTHVS
                     AGDVKLPAGFTLVTPHDTVLISIEASQTAQQAEPVAGETPAVVADPAAAAPAPPAA"
     gene            862..1428
                     /gene="pth"
                     /locus_tag="VKJ77_26585"
     CDS             862..1428
                     /gene="pth"
                     /locus_tag="VKJ77_26585"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF013368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HMC48909.1"
                     /translation="MRLVVGLGNPGRQYARTRHNAGFMVVDALAERWGIGDAWKTKGD
                     RRELVDRARGVVLLEPLSYMNLSGEPAEKVASWYKIEPSHMLVVVDELDLPFGTLRMR
                     ERGSAGGHNGLKSMIQYFGPDFPRLRVGIGRDSSADAIDRVLGTFGPDEERQLPDIIT
                     AAVDGVELWLKEPVIKAINFINSWSPAS"
BASE COUNT          310 a          508 c          467 g          276 t
ORIGIN      
        1 aaatcgagca gcagtcgatc gcgcaaattc tggccgacgc catcaaacgc attaccgcca
       61 accgctcggt ttccgaactt ttcggccccg aagagaccga gggcggcggc gacagcactg
      121 cggacccttc acacgcggca gttaacgccg aatccgttct cacgccagcc ggcgtttaac
      181 agcaaggaat atttcatggc caaatcagca acgcaccaga ccgacaagct cacgatcgaa
      241 acgcgcgatc gcgccggcac cacggcggcg caagccgttc gccgcgaagg caagatcccg
      301 ggcgtgctct acggccacgg cgagccgacc ccgatcgcca ttgaaatcaa ggccctcgag
      361 gcggtgttgt tgcgcggcaa gagccacgtg ctcgaagcga ccgtcggcgg caaacacgac
      421 tccgtgctgc tgcgcggcgt gcaacgccac cccgtgacgc ataagccgat tcacgtcgac
      481 ttccagcgtg tcattaaagg cgaagccgtc acggccacgt tgcccgtcgt tatcaccggc
      541 gtatcgcccg cggtaaaaga aggcgccgtt atggatctcg tgacgcgttc gatcgacgtc
      601 aagggtccct ccgacaaact tccggacaat atcacaatcg atgtcagcga gatgggcgtg
      661 cacacgcacg ttagcgccgg cgacgtcaaa ttgccggccg gcttcacgct tgtgacgccg
      721 cacgatacgg tcctgatttc gatcgaagca tcgcagaccg cgcagcaagc tgagcccgtc
      781 gccggtgaaa cgcctgcggt cgtggccgac ccggctgctg cggcgcccgc accacccgcc
      841 gcgtaatttc ccatcgccgg cttgcgtctg gttgtcggcc tgggaaatcc gggccggcag
      901 tacgcccgca cgcgtcacaa cgcggggttc atggttgtcg atgcgctggc cgaacgctgg
      961 ggcatcggcg atgcgtggaa gaccaagggt gaccggcgcg agctggtcga tcgcgcccgc
     1021 ggcgtcgtct tactcgaacc gctttcgtat atgaacctca gcggcgagcc ggccgaaaag
     1081 gttgcgtcct ggtacaagat cgagccgtca cacatgctcg tcgtcgtcga cgaactcgat
     1141 ctgccgttcg gaacattgcg catgcgcgaa cgcggcagcg ccggcgggca taacgggctc
     1201 aagtcgatga tccaatattt cggcccggac tttccgcgct tgcgcgttgg gatcgggcgc
     1261 gattcaagcg ccgatgcgat cgatcgcgtt ttgggaacct tcggccccga tgaagagcgg
     1321 caattgcccg acatcattac cgccgcggtt gacggggtcg agctgtggct taaagagccc
     1381 gtgattaaag cgatcaactt catcaacagc tggtcgcccg ctagctagtg tccgatgcga
     1441 acgggcggca ccgcgctttc gttctgctac tatgagaact gcgattctcg cgctgctggc
     1501 gatcctaacg ttcaccggtg caacggcgta ctatccgctc aacatccggc aaccccatgc
     1561 t
//
LOCUS       DATGBK010001888         1740 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_323168, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001888 DATGBK010000000
VERSION     DATGBK010001888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323168"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(274..1470)
                     /locus_tag="VKJ77_26590"
     CDS             complement(274..1470)
                     /locus_tag="VKJ77_26590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC48910.1"
                     /translation="MPYLERGSRAYWHAAIALLFAGYATFSLLYCVQPLLPEFTKTFG
                     VSPAESALSVSVTTASLAVAIFIAGFVSEGWSRHRLMTLSLTVSSLLTMIVAFLPSWH
                     ALLFVRALEGLALGGVPAVAMAYLAEEVHPDGLGLAMGLYVGGTAIGGMAGRVISGIL
                     ADFFSWRVAIGGIGVLGLLATLAFRALLPPSRRFVPRVGMGFRHHRTALAGHLQNRAL
                     RCVILMGFVLMGSFVTLYNYVGYRLIAAPFNLNQTEIGAIFVVYLTGVVASPWSGKMA
                     DIFGRGRVLIAALLLMIFGVALTLSSSLPVVIAGIACMTFGFFAGHSVASGWIGLLAK
                     GPKGQAAALYLLAYYIGSSVLGSWGGHFWTIAGWPGVSGFVFVLLLIGLGGAEYLRRQ
                     ERHVNA"
BASE COUNT          424 a          538 c          486 g          292 t
ORIGIN      
        1 aagtcgccga tcgtgaagta tgtggtcata cccgtctccc atcattcgtg ctcagcgttc
       61 acctggctgc gtgagacgtc gcactgtcga ttcgagtata ggccgttgtt cgagctttat
      121 ttgtgccgct ttccgcaaac gttagcgaac gattaacgaa acgccttatg gagtgggcct
      181 tccgggccag atgttttaag cggatacgga aaaacccttg ctaattatta tttacaaata
      241 actttcatta cattcgcgcg tgcaggtaag cgatcaagcg ttcacgtgcc gttcttgtcg
      301 gcgcaagtat tccgcgccgc ccaagccgat taacagcaac acgaatacga agccgcttac
      361 gcccggccag ccggcgatcg tccagaagtg cccaccccac gaacccagca cgctggagcc
      421 gatgtaatac gccagcagat agagcgcggc ggcctgacct ttcgggcctt tcgccaacaa
      481 accgatccac ccgcttgcaa ccgaatgccc cgcgaaaaac ccgaacgtca tgcacgcgat
      541 gccggcaatc accacgggca gcgaactcga caacgtcaac gccacgccaa aaatcatcag
      601 caggagcgcg gcgatcagga cgcggccgcg gccgaatata tcggccattt ttccggacca
      661 cggcgatgcc accacgcccg tcagatacac cacgaatatc gcgccaatct cagtctggtt
      721 gagattgaac ggcgctgcga tcaagcgata tccgacgtag ttataaagcg tcacgaagct
      781 gcccatgagc acgaaaccca tcaggatcac gcaccgcagg gcgcggtttt gcagatgccc
      841 ggccagcgct gtccgatgat ggcgaaatcc catcccgacg cgcggcacga aacgccgcga
      901 aggcggcaag agcgcacgaa acgccagcgt ggcgagcagc ccaagcaccc cgatcccgcc
      961 aatagccacg cgccacgaga agaagtccgc gagaatcccg ctgattacgc gcccggccat
     1021 tccgccgatt gccgtgccgc cgacatagag tcccatcgcc aggccgagtc cgtcgggatg
     1081 tacctcctcc gcgagatagg ccattgcgac ggctggtacg ccgccaagcg cgagaccttc
     1141 gagcgcccgc acgaacaaca gggcgtgcca gctcggcaga aacgccacga tcatcgtcag
     1201 cagcgacgaa accgtcagcg acagcgtcat caaccggtgc cggctccagc cctctgaaac
     1261 aaagccggcg ataaaaatcg ccacggcgag tgaagccgtc gtcaccgata ccgacagcgc
     1321 actttccgcc ggactcacgc cgaacgtctt ggtgaactcc ggaaggagcg gctgcacaca
     1381 gtagagcagc gagaaggtgg cgtagcctgc aaacagcaag gcaatcgccg cgtgccagta
     1441 agcacgcgag ccacgttcga ggtacggcaa gggatcaggg ggaagcgagg gggacgaagc
     1501 tgaccgggac ggcgccggcg atgaagtcac aagtggatct ccggtggcga atggcctaac
     1561 gataccgtga ttgtcagggt tttgccggac gtcgcgtcga gcgctttcaa tcaactttcg
     1621 aaaagcggtt gagatacaaa tacgttgttt caatgcgatg caagttttcg acccgcgcga
     1681 attgatgcgc taaagtagaa catcgtttca gccgaaatca tcggaacagg actgcagttt
//
LOCUS       DATGBK010001889         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_138237, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001889 DATGBK010000000
VERSION     DATGBK010001889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138237"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..1533
                     /gene="hydA"
                     /locus_tag="VKJ77_26595"
     CDS             106..1533
                     /gene="hydA"
                     /locus_tag="VKJ77_26595"
                     /EC_number="3.5.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018903839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004157 - dihydropyrimidinase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HMC48911.1"
                     /translation="MTTTPTPTLIKGGRIITAVDDYVADILVEGERIVSIGLRLDAGP
                     DARVIDAAGLLVFPGGVDCHTHMENTFGPSVTADNFASGTRSAAFGGTTTIIDFALQT
                     AGTSPLDAISRAQSKAASAASIDYGFHVIVTQVDERVLGDMQYAIRHEGVSSFKMFMA
                     YPGTVMSDDAAIFQAMRMVGQHGGMIALHAENGTIIDLLIREALALGHTAPRYHALTR
                     PAIMEGEATHRGIKLAELAEAPVYFVHLSAKEALKHVIEARDLGIPVFAETCPHYLFF
                     DESAYSDDSFDLARYVMSPPLRSKEAQKALWTALKTDDLQLISTDHCPYCMKEGHRGN
                     VNQKPLGLDDFSKIPNGVPGVETRMTVVYDGGVRNGRITLNRFVELMSTAPAKLFGLF
                     PKKGTLAVGSDADIVLFDPNESHTISADTQHSDCDFTLFEGRDVTGRVKKVLLRGELL
                     IDNGDWVGRTGQGEFVARGELGGHW"
     gene            1540..1761
                     /locus_tag="VKJ77_26600"
     CDS             1540..1761
                     /locus_tag="VKJ77_26600"
                     /inference="COORDINATES: protein motif:HMM:TIGR02605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FmdB family zinc ribbon protein"
                     /protein_id="HMC48912.1"
                     /translation="MPIYEHACDSCGAFDSMRPVARRDEPAPCPKCGVLSPRVASGST
                     VLLAQRGRQTPTEEGAYGFRHQGGCACCR"
     gene            complement(1821..>2123)
                     /locus_tag="VKJ77_26605"
     CDS             complement(1821..>2123)
                     /locus_tag="VKJ77_26605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007746933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC48913.1"
                     /translation="VRELENFVERMVNLSEDGTISDVGSLFRGMQTPDVVSDGVREAE
                     PPQVVSLAEAERRAIEEALRSCAFNMTRCATVLAVSKPALYAKLKRHGIRLRRTLQ"
BASE COUNT          419 a          669 c          639 g          396 t
ORIGIN      
        1 cccgtatccg gcgatgcgcc cgcccattgc gccgctctcc cacgcagaaa tggcgcgtct
       61 cgaagacgcg ctctccatcg ccaccagcgt tcaacggagt gactcatgac caccaccccg
      121 accccaaccc tcatcaaagg cggccgcatc attacggccg ttgacgacta tgtcgccgac
      181 atcctcgtgg aaggcgagcg catcgtcagc atcgggctgc gcctcgacgc gggaccggat
      241 gcgcgcgtga tcgacgccgc agggctgctg gtgtttccgg gtggcgtcga ttgccatacg
      301 catatggaga acaccttcgg gccgtcggtg acggccgaca actttgcgtc aggcacgcgc
      361 tccgcggcct tcggcggaac cacgacgatt atcgactttg cgttgcaaac ggccggcacg
      421 agtccgctcg atgcgatttc gcgggcgcag tcaaaggccg catcggcggc gagcatcgac
      481 tacggatttc acgtgatcgt gacgcaggtg gacgagcgcg tgctcggtga catgcaatat
      541 gcgatccgtc acgaaggcgt atcgagcttc aagatgttca tggcgtaccc cggcacggtc
      601 atgtcggacg acgccgccat tttccaggcc atgcggatgg tcggccagca cggcggcatg
      661 atcgcgttgc atgccgagaa cggcacgatc atcgacctgc tgattcgcga ggcgctcgcg
      721 cttggtcaca ccgcaccgcg ttatcacgcg ttgacgcgtc ccgcgatcat ggagggggaa
      781 gccacgcatc gcggcatcaa gctcgccgaa ctcgccgaag caccggtcta cttcgtgcac
      841 ctctcggcga aggaggcgtt gaagcatgtg atcgaggcgc gcgacctcgg cattcccgtg
      901 tttgccgaga cctgcccgca ctatctgttc ttcgacgaat cagcgtactc cgacgacagc
      961 ttcgatctcg cgcgttacgt gatgagtccg cccctgcgat cgaaggaggc gcagaaggcg
     1021 ctctggaccg cgctcaagac cgacgatctg caactgatct caaccgatca ctgtccgtat
     1081 tgcatgaagg agggccatcg tggcaacgtc aaccaaaagc cgcttggact cgatgatttc
     1141 tcgaagatcc cgaacggcgt tccgggtgtc gaaacgcgca tgacggttgt ctatgacggc
     1201 ggcgtacgca atggccgcat cacgctgaat cgcttcgtcg agttgatgtc gactgcaccg
     1261 gccaagctct tcggcctctt cccgaagaag ggaacgctcg cggtgggcag cgacgccgat
     1321 atcgtcctgt tcgatcccaa cgagtcgcac acgatcagcg cggacacgca gcacagcgat
     1381 tgcgacttca cgttgtttga ggggcgtgac gtcacgggcc gggtgaagaa ggtgctgtta
     1441 cggggagaat tgctgatcga caacggcgac tgggtcggac gaacaggtca aggagagttc
     1501 gtcgcgcgag gcgaactcgg cggccattgg tagaacgtta tgccgatcta cgagcatgcc
     1561 tgcgattcct gcggtgcatt cgattccatg cgcccggttg ccagacgcga cgaaccagcg
     1621 ccctgcccga agtgcggtgt cttatcgccg cgcgtcgcca gcggttcgac ggtgctgctg
     1681 gcgcagcgcg gcaggcaaac gccgacggaa gaaggcgcct atggtttcag gcatcaaggc
     1741 ggctgtgctt gctgtcgcta gaaggttagc tcgaacgagc ctgtatgtgc gaatacgcca
     1801 ttgaccgagc aatctcgcct tcattgcaat gtccgccgca aacgaatgcc gtggcgcttg
     1861 agtttcgcgt aaagcgccgg cttcgaaacc gcaagcacgg tcgcgcaacg ggtcatattg
     1921 aaagcgcaag accgcaatgc ctcttcaatc gcccgcctct ccgcctccgc gagcgataca
     1981 acctgcggcg gctccgcctc acgcacgccg tctgacacta catcaggcgt ttgcattccg
     2041 cgaaaaagcg aaccgacatc gctgatcgtt ccgtcctcgc tcaaattaac catgcgctcg
     2101 acaaagtttt caagttcgcg cac
//
LOCUS       DATGBK010001890         2024 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_323181, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001890 DATGBK010000000
VERSION     DATGBK010001890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323181"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..615
                     /locus_tag="VKJ77_26610"
     CDS             <1..615
                     /locus_tag="VKJ77_26610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007585128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HMC48914.1"
                     /translation="TTGLVDELTPTARIAGACNAILRRPDGTLLGDQFDGAGFTRGVE
                     RKGRSLKGARAFVLGSGGVGSAIAASLAAAGVAGLALFDTNTVAVEALADRLRKHYSE
                     LVVTTGSKDPAGYDVVVNATPLGMNEGDPLPFDIDRISPSTFVGEVVMKSEYTPLLRA
                     AKEKGCAVQVGTDMLFEMIPAYLEFFGFGTATPEQLRAVSQIKY"
     gene            628..1083
                     /gene="aroQ"
                     /locus_tag="VKJ77_26615"
     CDS             628..1083
                     /gene="aroQ"
                     /locus_tag="VKJ77_26615"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014427641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HMC48915.1"
                     /translation="MKKVLVLNGPNLNLLGQREPAQYGSDTLATVEALCKEAGERLGV
                     EVECRQSNHEGVLIDWIHEAGREIAAGNMHGVVMNPGAFTHTSIALHDAIKGASVTLI
                     ELHISNVHARESFRHHSYISPAARGIIVGLGIKGYALAIDALVQVSQAK"
     gene            1806..>2024
                     /locus_tag="VKJ77_26620"
     CDS             1806..>2024
                     /locus_tag="VKJ77_26620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012405861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HMC48916.1"
                     /translation="MRLVKESARIACLFAVAGLLTLAGCTKVATPAQDGGAESTLKAV
                     LQRGTLRVGDCLSFAPFGFYNKDGAADGY"
BASE COUNT          396 a          601 c          607 g          420 t
ORIGIN      
        1 acgacgggtc tcgttgatga actcacgcct accgctcgca ttgccggcgc atgcaacgcc
       61 attcttcggc gcccggacgg cacgttgctc ggcgatcagt tcgacggcgc gggcttcacg
      121 cgaggcgttg aacgcaaagg ccggtcactg aagggcgcgc gcgcgtttgt actcggcagc
      181 ggcggcgtgg gctcggccat cgcggcatcg ctggcagcag cgggcgtggc gggcctcgcc
      241 cttttcgata ccaacaccgt agcagtcgaa gcgctcgccg accgcttgcg caagcactat
      301 tcggagcttg tggtgacgac aggttctaaa gaccccgcag gctatgacgt ggtcgtcaat
      361 gcaaccccgc tcggaatgaa cgagggcgac ccgttgccgt tcgacatcga ccgcatttcg
      421 cccagcacgt tcgttggcga agtggtcatg aaatccgaat acacgccgtt gctgcgcgcg
      481 gccaaagaga aaggctgtgc ggtgcaggtc ggcaccgaca tgctcttcga aatgattccg
      541 gcctacctgg agttctttgg tttcggcacg gccacgcccg aacaactgcg cgcggtttcg
      601 cagatcaaat attgatgagg tgatgtcatg aagaaggtgc tcgttctcaa cggacccaac
      661 ctgaacctgt taggccagcg cgaacccgcg cagtatgggt ccgacacgct cgccacggtc
      721 gaggcgcttt gcaaggaagc cggcgagcgg ctcggtgtgg aggtggagtg ccggcagtcg
      781 aatcacgagg gtgtgctgat tgactggatc cacgaggcgg gtcgcgagat agcggcgggc
      841 aacatgcatg gggtcgtgat gaacccaggc gctttcacgc atacgtcgat tgccttgcac
      901 gatgccatca agggcgcgag cgtcacgctg atcgagctgc atatctctaa cgtccacgcg
      961 cgggaatcgt ttcgtcacca ctcgtatatt tcgccggcag cgcgcgggat catcgtcggt
     1021 ttgggcatca agggttatgc ccttgccatt gatgcgctag tgcaggtgtc tcaggctaag
     1081 taagcgggtg gagttgttgc aagttcacgg gcaatttccg gcgcagtgcg gacagcttga
     1141 taatcggcta gcctcgcgcc tttgaatgag cccgtcacgg tctcaagtct cgcggctgcc
     1201 gcgataaata agtagaattc ctgatcatgt tgaccggaat acagtcttct cgtaccgacg
     1261 ccgtcgagat gaaaccgatc ttcttgaatc tctcgccgtc caccacaaag acgccgccag
     1321 ccgtcacctc ggcgatgtaa cacctgcgtc cgtcgatcac gcgcgtaacc attgcgttgc
     1381 cgcgtccttc aactgcggcc aaccgaaacg ataagcatcg cttagaccgc accgccacgg
     1441 ttccgcgcgc ggaacacgct ccgaattatc cgcaacgctc tcgcggcggt aagcggaccg
     1501 aaagacggaa tttagacgct caacaccacc gcttcgaatc agcggcatcc cccattgcca
     1561 cgtgtttttt tctgtgaaag acttcgttca tctgctgtgc cggacatgat tccgatatat
     1621 cagacaagca gctcaactcg ttctagccgg ccttggcacc gcgttcacgc gacgcagggc
     1681 cgtgcacaac atcgttttat gcaggccgat gcgccggcat ggtgagggcg ttgaatccag
     1741 gattttctct ggccgccgcc gtttgtccct gaactgacat tttcactttc aaggctgaga
     1801 cccaaatgag acttgtcaaa gaaagcgcac gtatcgcctg tttattcgcg gtggccggtc
     1861 tgttgacgct ggccggctgc acaaaggttg ccaccccggc tcaggatggc ggggcagagt
     1921 ccacgctgaa ggcggtcttg cagcgtggca cgctgcgtgt cggtgactgc ctgagctttg
     1981 cgcccttcgg tttttacaac aaggacggcg cggccgacgg ttat
//
LOCUS       DATGBK010001891         2496 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_300295, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001891 DATGBK010000000
VERSION     DATGBK010001891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300295"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..777
                     /locus_tag="VKJ77_26625"
     CDS             <1..777
                     /locus_tag="VKJ77_26625"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HMC48917.1"
                     /translation="DSGVDPHFNGAIGGMQIGQDLDADTNADGQRNHYGFLLGVAHAS
                     GDVSGFALGMPAVQAGSLSIDAGSIGAYWTHIGAGGWYTDTIVIGSTLTIKPSSNDGI
                     SPTTHGRSIAGSIEAGVPFPLAEGLSIEPQAQVIWQHVAIDDLNDGISSVAFTNPNAV
                     AARLGVRMTGRVQGLGATWQPYAGVNLWRYFNASSHVTFGGTTDIPAQSSSTIADIAA
                     GVAVNLSTRGSAFLSVHYAMNASGARRETVGGDATVRWRW"
     gene            complement(835..1350)
                     /locus_tag="VKJ77_26630"
     CDS             complement(835..1350)
                     /locus_tag="VKJ77_26630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020379708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48918.1"
                     /translation="MKPGLGLMLAASVAASCVLVSGCSSIGAAAGAVAGVSTGAVTSN
                     PAIGFGVGIAVQAATDEAIQRLMKRLHSDQQIAIATTAGDLPIGETKPWRVKHTLPVE
                     NGHGDVRVLREFSSALATCREFAFSVADGDKPDAHQDWFLAQACKGTDNSGGWKWASA
                     EPAVERWGNLQ"
     gene            complement(1347..1901)
                     /locus_tag="VKJ77_26635"
     CDS             complement(1347..1901)
                     /locus_tag="VKJ77_26635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48919.1"
                     /translation="MQKTIYRRPPNAVALATLLAGALACSALSGCSSLYTESAVAGAG
                     IGGAAIASSVTRNATVATGIGLGAVAAARAGVQYSERVMHTYTQDRIAGAAGPLAVGA
                     VAPWAAVHSVPIEPDEKGRVTVSRTISTGTLDCKEIVFSVDTDATKDHPSDSGFYVAS
                     ICRDGQVWKWASAEPATPRWGALQ"
     gene            complement(2183..>2496)
                     /locus_tag="VKJ77_26640"
     CDS             complement(2183..>2496)
                     /locus_tag="VKJ77_26640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007175807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HMC48920.1"
                     /translation="ELKNTVYRAFILAEKTVEIAHPHLASRVKKPVTQGDAMNVWVGT
                     PLADAQKQIILGTLKHCGGDKRRAAKALGVSLKTLYNRLGTYENEGGDGDSSTPTSAD
                     S"
BASE COUNT          464 a          792 c          777 g          463 t
ORIGIN      
        1 gactcgggcg tcgatccgca tttcaatggc gcgatcgggg gcatgcaaat cggacaggat
       61 ctcgatgccg ataccaacgc cgacggtcaa cggaaccact atggatttct gctcggtgta
      121 gcgcatgcat caggcgatgt cagcggtttc gcgctcggca tgccggccgt gcaggcgggc
      181 agcctgagta ttgatgccgg gagcatcggc gcttactgga cgcatattgg cgccgggggg
      241 tggtacaccg ataccatcgt gatcggcagc acattgacga tcaaaccgtc gtcgaacgac
      301 ggcatcagcc caactacgca tggccggtcg atagcgggat ccatcgaggc tggcgtgccg
      361 tttcccttgg ccgaaggatt gagcatcgaa ccgcaggcgc aagtgatctg gcaacacgtg
      421 gcaatcgatg atctcaacga cggcatttcg agcgtcgcct tcaccaaccc caacgccgta
      481 gcagcccgcc ttggcgtgcg gatgacgggg cgggtgcaag gactgggcgc gacctggcag
      541 ccgtatgcag gcgtgaatct ctggcgctac ttcaatgcct cgagccacgt gacatttggc
      601 ggtacgaccg acatcccggc gcaatcatcg tcgacgatcg ccgatattgc agccggggtc
      661 gccgtgaacc tgagcacacg cggcagcgcc ttcctgagcg tgcactacgc gatgaacgca
      721 agcggcgcgc gccgcgagac ggtaggtggg gacgccaccg tgcgctggcg ctggtaaagc
      781 acctttgagc gccggtgcac ggcaacgcac atcgaaatgg aaacccgctg actactactg
      841 cagattgccc cagcgctcga cagccggttc cgccgatgcc cacttccagc cgccgctatt
      901 gtcagtgccc ttgcaggcct gtgcgaggaa ccagtcctga tgcgcgtccg gcttatcgcc
      961 gtccgcgacc gagaacgcga actcccggca cgtagccagc gcgctgctga attcacgcag
     1021 cacacgcacg tcgccatgac cgttttccac cggcagcgta tgtttcacgc gccacggttt
     1081 cgtttcgccg atcggcagat ccccggcggt cgtcgcaatg gcgatctgct ggtcgctgtg
     1141 caggcgtttc atcaggcgct ggatggcttc gtcggtggcg gcctggaccg cgatacccac
     1201 gccgaaaccg atggccggat tgctggtgac cgcgcccgtg gagacgcccg caaccgcgcc
     1261 ggccgcagca ccaatggacg agcagccgct cacgagaacg cagctcgcgg caacgctggc
     1321 tgcgagcatc aaaccgaggc cgggcttcat tgcagcgcac cccagcgtgg cgtggcgggt
     1381 tccgccgacg cccacttcca gacctggccg tcacggcaga tggaagcgac atagaaacca
     1441 ctgtccgacg gatgatcctt ggtggcatcg gtatcgacgg agaatacgat ctccttgcag
     1501 tcgagcgtgc cggtgctgat ggtccggctg accgtcacgc ggcctttctc gtccggctcg
     1561 atgggcacgc tatgcaccgc ggcccacggc gccactgcgc cgacggcgag cgggccggct
     1621 gccccggcga tcctgtcctg cgtataggtg tgcatcacgc gttcgctgta ctgcacgcca
     1681 gccctggcgg cggcgacggc gccaaggcca atgccggttg ccaccgtggc attccgggtc
     1741 acgctgctcg cgatggcggc gccgcctata ccggcgcctg ccacggcact ttcggtatat
     1801 aaggagctac accctgaaag cgcggagcat gcgagcgctc cagccagaag cgttgccagt
     1861 gcgacggcat tggggggacg ccggtaaatc gttttctgca tggtgctgta ccttcctcgc
     1921 ctttccttat tctttcgata aacggccacc ggcttgcttg tgcgggcatt gcaggaacac
     1981 taagcaatcg gagcgcccgc gcattttgaa ggacgcagcg aaatgaaggg caaagaaatt
     2041 tgcaagaaat tgcaaatgcg gggaacgtag tgcggaaaat gaaaacttgc cgtgacaatc
     2101 tcaggcaatc ctgcgatcgg atgagtcgat gagtcgcatc aggccccatc gacctcatcg
     2161 acctaattga agtagcgccg atctagctat ccgcgcttgt cggcgttgac gagtccccgt
     2221 cgccgccttc gttctcataa gtgccgaggc ggttgtacag cgtcttgagg ctcacgccga
     2281 gcgccttggc ggcgcgacgc ttgtctcctc cgcaatgctt gagcgtgccg aggatgattt
     2341 gcttctgcgc gtcggcgagc ggcgtgccga cccacacgtt catcgcatcg ccttgcgtga
     2401 ctggcttttt aacccgcgat gccagatgcg gatgtgcgat ctccacggtc ttctcagcca
     2461 ggatgaacgc gcgatacacc gtgttcttca actcgc
//
LOCUS       DATGBK010001892         1713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_161256, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001892 DATGBK010000000
VERSION     DATGBK010001892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161256"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1693
                     /locus_tag="VKJ77_26645"
     CDS             <1..1693
                     /locus_tag="VKJ77_26645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009892433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HMC48921.1"
                     /translation="NRWDFVAFPLIICLIAMAAIGFHQTMAPIATLKAQAISLAPSNL
                     PEYALRTTLRMLAAMIASLVFTLIYGTLAAKSRRAEKVLVPILDILQSVPVLGYISFT
                     VTFFIALFPTRVAGAECAAIFAIFTSQAWNMTFSFYQSLRTTPRDLEEVARSFHLTAW
                     QRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASETITVGNNTITLPGIGAYLAQAITE
                     KNMGAVGWVILTMTVVILGYDQLLFRPLVAWADKFRMETTSSGVAPESWVLGLIRRTH
                     LIHRLLVPAGWVFATAARIPLRLPSFDRANLRMTRRKAPSRFGDLIWSIVVIAVTLYV
                     VWRVVSYVRTGVDLHEVGHVLVLGLITLLRVAILIAISSVIWVPLGVIIGLRPALAEK
                     VQPLAQFLAAFPANLLFPIFVIVIVRFHLNPDIWLSPLIVLGTQWYILFNVIAGATAY
                     PNDYREVATNFRIRGWQWWRQTMLPGIFPYYVTGAITASGGAWNASIVAEFVQWGDTK
                     VAAHGLGAYIAQTTAAGDYPKIILGIAVMSLFVTLFNRLLWRPMFTFAEARLRVD"
BASE COUNT          277 a          543 c          501 g          392 t
ORIGIN      
        1 taatcgatgg gacttcgtcg cgttcccgct gatcatctgc ctgattgcga tggcggctat
       61 cggcttccat cagaccatgg cgccgatcgc cacgcttaaa gcccaagcga tctcgctcgc
      121 accgtcgaac ctgcctgaat acgcgctgcg cacaacattg cggatgctcg ccgccatgat
      181 cgcttcgctc gtcttcacgc tcatctacgg caccctcgcg gccaagagcc gtcgtgcgga
      241 aaaggtgctc gtacccatcc tggacatcct tcaatcggtt ccggtcctgg gctatatctc
      301 gttcacggtc acgttcttca ttgcgctgtt tccgacgcgc gtggcgggtg ccgaatgcgc
      361 ggcgatcttc gcgatcttca cgagccaggc gtggaacatg acgttcagtt tctaccagtc
      421 gttgcgcacg acgccgcggg acctggagga agtcgctcgc agcttccacc tgaccgcgtg
      481 gcagcgattc tggaaactgg aagtcccctt ctcgatgccg ggcctcatct ggaacatgat
      541 gatgtcgatg tcgggcggct ggttcttcgt cgttgcctca gagacaatca cggtcggcaa
      601 caatacgatc acgctgccgg gcataggcgc atacctcgcg caggcgatca ccgaaaagaa
      661 catgggcgcg gtaggctggg tcattctcac gatgaccgtc gtgatccttg gctacgacca
      721 actgctgttt cgtccgctcg ttgcatgggc cgacaagttc cggatggaaa caaccagttc
      781 cggcgttgcc ccggagtcgt gggtgctggg cctgattcga cgcacgcatc tgattcatcg
      841 cttgctcgtg ccggccggct gggtcttcgc caccgctgca cgcatcccgc tgcgcctgcc
      901 ctcgttcgat cgcgcgaatt tgcgtatgac caggcgcaag gcgccgtcgc gcttcggcga
      961 cctcatctgg agcatcgtgg tcatcgcggt cacgctctat gtagtttggc gcgtggtcag
     1021 ctacgtgcgc accggcgttg acctccatga agtagggcac gtgcttgtcc tcggcctgat
     1081 cacgttgctg cgcgtggcga tcctgatcgc gatctcgtcg gtcatctggg ttccgctcgg
     1141 cgtgataatt ggattgcgcc ccgcgctcgc cgagaaagtg cagccgctcg cgcaattcct
     1201 ggcggccttt cccgccaacc ttttgtttcc tatcttcgtg atcgtgattg tccgctttca
     1261 cctgaacccg gacatctggt tgtcgccgct gatcgtgctc ggcacgcagt ggtacatcct
     1321 gttcaacgtg atcgcgggcg cgaccgctta cccgaatgac taccgcgagg ttgcgaccaa
     1381 cttccggatt cgcggctggc aatggtggcg ccagaccatg ttgccgggca tcttcccgta
     1441 ttacgtgacg ggtgcgatta cggcttcggg cggcgcatgg aacgccagta tcgttgccga
     1501 gttcgtgcag tggggcgaca ccaaggtggc cgcgcatggc ctgggcgctt acatcgcgca
     1561 gaccaccgct gcgggcgact atccgaagat catcctgggc atcgctgtca tgtcgttgtt
     1621 cgtcacgctt ttcaaccgcc tgctgtggcg ccccatgttc acctttgccg aagccaggct
     1681 tcgagtcgat tgaggatcca tctccatgcc aaa
//
LOCUS       DATGBK010001893         4053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_22351, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001893 DATGBK010000000
VERSION     DATGBK010001893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4053
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22351"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2619)
                     /locus_tag="VKJ77_26650"
     CDS             complement(<1..2619)
                     /locus_tag="VKJ77_26650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006487209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase domain-containing
                     protein"
                     /protein_id="HMC48922.1"
                     /translation="MLTKSEERVAHLLTDVVDYARGRLPEPAFNVVEPLLSHYYELAD
                     PEDVQSRDIADLYGAAMAHWQTAQKFTTGREVLRVYNPNLEQHGWHSDHTVVEIVNDD
                     MPFLVDSVTMAVNRLGLAMHSAIHPVFRVSRDASGAITRIALGHVDGGDPQSRLESFI
                     HFEVDRCGEAAKLDELRSDIARVLGDVRASVEDWPKIVEVARATIGEMKARETSADGL
                     EARAFLEWMVADHFTFLGHRDYELITQDSGFALRGVPGSGAGLLRESLRPPAADNVTP
                     LPPAAAAIINGSVPIFLTKANSRATVHRPGYLDYVGVKRVGADGKVIGERRFIGLYTS
                     TAYLVPTSEIPIVRRKCANIIRRAGFLAKGHLHKSLVTVLEQYPREELFEADEDDLFD
                     IALGVLRLQEHQRTRLFVRRDRFDRFVSCLVFVPRDKFNTDLRKRIANVLMKAFNGKS
                     IEFTPLLSESPLARIYITVRSDKGAMPEADTRELEQQIVQVARRWQDDLADALVDSFG
                     EEQGNRLLNRYADSFPAGYREDYPARTAVRDIELIEQTQVRAGGLAMSLYRPIEAGRR
                     AFRFKVYRVGDPIALSHSLPMLEHLGVRVDEERPYRIEPLGAPHAWIHDFGLELADDV
                     EFDIDRVKELFENAFASVWTGEVENDDFNRLVLRAQLGARDVTILRAYAKYLRQVGST
                     FSDAYIERALTGNPAIARKLLELFLVRFNPALPGALGDNPQSRELRDTRTQHVLAEIE
                     AALDNVPNLDEDRILRQFLGVINATVRTNYFRKDDEGKPKPYLSFKLDPSMVPGLPEP
                     KPMFEIWVYAPRVEGVHLRGGKVARGGLRWSDRREDFRTEVLGLMKAQMVKNTVIVPV
                     GSKGGFVVKNPPPVSDR"
     gene            complement(2723..3922)
                     /locus_tag="VKJ77_26655"
     CDS             complement(2723..3922)
                     /locus_tag="VKJ77_26655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006483299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HMC48923.1"
                     /translation="MTPDVTSSSKRSATSGASITSGQRFKQLFTRNKLLALLLAVTVI
                     WIFFSFLTDGAFVTPRNLSNLLRQMSITGMLACGMVFVIISGEIDLSVGALLGLLGGV
                     AAILDVSHHWPIQFTVPAVMLLGIAIGMFNGWWSTYLRVPSFIVGLGGMLAYRGVLLG
                     VTGGSTIAPVSSNLVFIGQGYLPRMAGNALAIVLFALLVTLTVRQRQNRLRYNLAVVP
                     LWQDGVKIVAAGLVLVGFVTTLNQYGGIPVPVLLLLALLGIFTYIATQTVFGRRIYAV
                     GSNLEATRLSGVNTNRVKLMIFALMGLMCALAGLVNTARLAAGSPSAGTMGELDAIAA
                     CFIGGTSMRGGSGTVYGALIGALVMASLDNGMSMLDVDSYWQMIVKGGILVLAVWIDV
                     VSGSNQR"
BASE COUNT          846 a         1276 c         1167 g          764 t
ORIGIN      
        1 gcgatcagac accggcggcg ggttcttcac cacaaagccc cccttcgatc caaccggcac
       61 gatcacggtg tttttcacca tctgcgcctt catgaggccg agcacttcag tgcgaaagtc
      121 ctcgcggcga tccgaccacc gcaagccacc tcgcgccacc ttgccgcccc gcaagtgcac
      181 gccttcgacg cgcggtgcat agacccatat ctcgaacatc ggcttgggtt cgggcaggcc
      241 cggcaccatc gacggatcga gtttgaatga cagataaggt ttgggcttac cttcgtcatc
      301 cttacggaaa taattggttc gtaccgtcgc gttgatgacg cccaggaact gcctaaggat
      361 gcggtcttcg tcgagatttg gtacgttgtc gagcgcggct tctatttcgg ccagcacatg
      421 ctgcgtgcgg gtgtcgcgaa gctcacggct ttgagggtta tcgccaagcg cccctggaag
      481 agccggattg aagcgcacca ggaacaattc aagcaacttg cgcgcgatcg ccgggttgcc
      541 ggtcaaagcg cgttctatat aggcgtcgct gaatgttgat cctacttgcc gcaggtactt
      601 ggcgtatgcg cgcaggatcg tgacgtcgcg ggccccgagt tgcgcgcgca agaccagccg
      661 gttgaagtcg tcgttctcga cttcgccggt ccagacgctt gcgaaggcat tctcaaacaa
      721 ctccttgacg cgatcgatgt cgaactccac atcatcggca agctccagcc cgaagtcgtg
      781 tatccatgca tggggcgcac ccagcggctc aatgcgatac ggccgttctt cgtccacacg
      841 cacaccaaga tgctccagca tcggcaggct atgcgacagc gcgatcgggt ctcccacccg
      901 gtacaccttg aagcgaaacg cgcgccgccc ggcttcgatc ggcctataga ggctcatcgc
      961 gagaccgccc gcccttacct gcgtctgttc gatcaattcg atatcgcgta ccgcagtacg
     1021 agccggataa tcctcccgat acccggcggg gaacgaatcc gcgtatcgat tcaggagccg
     1081 gttgccctgc tcctcaccaa agctgtcgac cagtgcatcc gcgagatcgt cttgccagcg
     1141 gcgtgcgacc tgcacgatct gttgctcgag ttcacgtgta tcggcttcgg gcatggcgcc
     1201 tttatccgag cgcacagtga tgtagatgcg cgccagcgga gattcggaca gcagcggcgt
     1261 gaactcgatg ctcttgccgt tgaacgcttt catgagcacg ttcgcgatgc gtttgcgcag
     1321 gtccgtgttg aacttgtcgc gcggcacgaa aacgagacat gagacaaaac ggtcgaaccg
     1381 atcgcgccgc acgaacagtc gtgtgcgctg atgctcctgc aaacgcagca cgccgagcgc
     1441 gatatcgaac aggtcgtcct catccgcttc aaagagctct tcgcgaggat attgttcgag
     1501 cacggtcact agcgacttat gcagatgccc cttggcgaga aagccggcac gcctgatgat
     1561 gttcgcgcat ttgcgccgca cgatcgggat ctcggacgtg ggaaccagat acgcggtcga
     1621 cgtgtacagg ccaataaacc ggcgctcccc gatcaccttg ccatccgcgc caacgcgctt
     1681 tacgccgaca taatccagat aacccggcct atgcacggtc gcccttgaat tggccttggt
     1741 gaggaaaatc ggcacggagc cattgatgat ggccgcggcg gcaggaggca atggcgtgac
     1801 gttatcggct gcgggcgggc ggaggctttc gcgcaacagt cccgcgccgg aacccggcac
     1861 gccacgcagc gcaaacccgc tatcttgcgt aatgagttcg tagtcgcggt gtccgaggaa
     1921 ggtgaaatga tccgccacca tccactccag gaacgcgcgt gcctccaagc cgtccgcgct
     1981 ggtctcacgc gctttcattt cgcctatggt cgcgcgtgcg acctcgacga tcttcggcca
     2041 gtcttccacc gaagcacgta cgtcaccgag cacgcgcgcg atgtcactgc gcagctcgtc
     2101 gagttttgct gcttcgccgc aacggtccac ttcaaagtga ataaacgatt cgaggcgcga
     2161 ttgcggatcg ccgccgtcga cgtgacccaa cgcgatacgc gtaatcgccc cgcttgcgtc
     2221 gcgcgagacc cggaacaccg ggtgaatggc ggaatgcatc gccaggccaa gtcggttgac
     2281 cgccatggtg actgagtcca cgaggaacgg catgtcgtcg ttgacgatct cgaccaccgt
     2341 atgatcggaa tgccagccgt gttgttcgag gttcgggttg tatacccgca ggacctcgcg
     2401 gcccgtcgtg aatttttgcg ctgtctgcca gtgcgccatg gccgcaccgt agagatccgc
     2461 tatatcgcgg ctctggacgt cttcggggtc cgcaagctcg tagtagtggc tcaggagtgg
     2521 ttcaacgaca ttgaacgcgg gctctggaag ccgtccccgt gcatagtcga ctacatcggt
     2581 gagaaggtgc gcaacgcgtt cttcgctctt ggtcagcata tcgtctcccg gatctggcac
     2641 gtacggtgct cggattatgc gccaagtttt gtgacacttg agcgccggaa gcaccgtccg
     2701 cggaaaccct cagaccttga ccctaacgct gattggagcc cgagacaaca tcgatccaca
     2761 ccgcaagcac aagaatgccg cccttcacga tcatctgcca atacgaatcg acgtcgagca
     2821 tggacatccc gttgtccagg ctcgccatga ccagtgcccc gatcaatgcg ccatagacgg
     2881 tcccggaacc acctcgcatg gacgttccgc cgataaagca tgcggcgatg gcgtcgagct
     2941 cgcccatggt tcctgccgac ggcgacccgg ccgcgagccg cgccgtgttg accagcccgg
     3001 caagcgcgca catcagcccc atcaacgcga agatcatcag cttcacgcgg ttcgtattca
     3061 cgcccgataa acgtgttgct tcgaggtttg aacccaccgc ataaatgcgc cggccgaaca
     3121 cagtctgcgt cgcgatatag gtgaaaatac cgagcaacgc cagcagcaac aataccggta
     3181 cgggaatacc tccatactgg ttcaacgtgg tcacgaaccc aaccagcacc aaccccgccg
     3241 ctacgatctt cacaccgtcc tgccacaggg gcactacggc caagttgtaa cgcagacggt
     3301 tctgccgctg gcgcacggtc aacgtgacca gcaacgcgaa cagcacgatc gcgagtgcat
     3361 tgcccgccat gcgcggcaaa tatccctggc cgatgaacac cagattgctg gagactggag
     3421 cgatcgtcga accgcccgtc acgcccagca gcacaccccg atacgcgagc atgccgccaa
     3481 gcccgacgat gaacgaaggc actcgcagat aagtcgacca ccagccattg aacatgccga
     3541 tcgcaatgcc gagcagcatc actgccggca cggtgaattg gatcggccag tgatgcgaga
     3601 catcgagaat agcggccacg ccgccgagca aaccaagcaa tgcgccgacc gatagatcga
     3661 tctcgcccga gatgatcacg aacaccatgc cacacgcgag catgccggtg atcgacatct
     3721 gccggagcag gttcgacaga ttgcgtggcg tgacaaacgc gccgtcggtg aggaaggaaa
     3781 agaagatcca gatgacggtt accgccagca gcagcgcgag caatttgtta cgcgtgaaaa
     3841 gctgcttgaa gcgctgtccg gatgtgatgc tcgcgccgct ggtggcgctg cgtttgctcg
     3901 acgaggtgac gtcaggagtc atgcgacgct cgcttgaaaa gagtttgtct gtggggtcgc
     3961 gcggatggcc gccgccagga tatgttcttg cgtgagccct tcgttgataa agtcgccacg
     4021 cagttggccc tcgcctatga ccagtacgcg gtc
//
LOCUS       DATGBK010001894         1898 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_161303, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001894 DATGBK010000000
VERSION     DATGBK010001894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161303"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..847)
                     /locus_tag="VKJ77_26660"
     CDS             complement(<1..847)
                     /locus_tag="VKJ77_26660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC48924.1"
                     /translation="MDQFDGKVAVITGAGSGFGREFALKGAALGMKLVLADVDVKGLA
                     ETVEMARGLGAEALGVHTDVADATQVDALARTTIDTYGAVHLLFNNAGVGTGGFVWES
                     SANDWAWVFGVNVMGVANGLRVFTPLMLAQQEPAHIVNTASVAGLLSAPGMGVYNASK
                     HAVVALTETLYHDLKIVGGQVDCSLLCPAFVPTGIANAERVRPEGLRNDEPLTASQRM
                     AGKQLTKAVESGKLSAAQVAELTFDAVRERRFYVLTHPNILASVQLRFDDVTQRRNPT
                     DPLSLK"
     gene            complement(890..1897)
                     /locus_tag="VKJ77_26665"
     CDS             complement(890..1897)
                     /locus_tag="VKJ77_26665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007181984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HMC48925.1"
                     /translation="MSEHTSINRQILLVSRPQGAASVDNFKLVETPLEPLADGQVRVR
                     NHFLSLDPYMRGRMDDSKSYAASQPLNEVMIGGTVGEVVESKNPKFAIGDKVVGIYGW
                     QEFGTSDGKGLRKVDDTHIPLSAYLGPVGMPGVTAWLGLNKIIEPKAGETVVVSAASG
                     AVGSVVGQLAKAAGCRAVGIAGGADKCRYVTETLGFDACIDYKAGNLHDDLKAALPNG
                     ADGYFENVGGEILDAALSRMNAFGRIALCGMIASYDGSPMPLKKPALMLTQRLKVQGF
                     IVSESPEVWPEALTQLGGLVAQKKLQYRETIAQGLENAPEAFLGLLKGKNFGKQLVKL
                     I"
BASE COUNT          354 a          634 c          524 g          386 t
ORIGIN      
        1 gcttcaacga cagcggatcg gttggattgc gccgctgcgt gacgtcatcg aaacgcagtt
       61 gcaccgacgc cagaatgttc gggtgcgtca gcacataaaa ccgccgctcg cgcaccgcgt
      121 cgaaggtcag ttccgccacc tgtgccgcgc tcagcttccc gctctccacc gccttcgtga
      181 gctgcttgcc ggccatgcgc tgcgatgccg tcagcggttc atcgttgcgc aaaccctcgg
      241 gccgtacccg ctcggcgttc gcaatgcctg tcggcacgaa tgccgggcat agcagcgaac
      301 aatccacctg gccgccgacg atcttcaagt cgtgataaag cgtctccgtc aacgcgacga
      361 ccgcatgttt cgatgcgtta taaacgccca ttcccggcgc tgacagcaag cccgccaccg
      421 atgccgtgtt gacaatatgc gccggctctt gctgcgcgag catcaacggc gtgaacacgc
      481 gcaagccgtt cgcgacaccc atcacgttga cgccgaagac ccaagcccag tcgttcgcgc
      541 tgctttccca gacgaaaccg cccgtgccga cgcccgcgtt attgaaaagc agatgcacgg
      601 cgccgtaggt atcgatggtc gtgcgcgcaa gcgcatcaac ctgcgtggca tcggcgacgt
      661 cagtatgcac gccgagcgct tcagcgccca aaccgcgcgc catctcgaca gtttccgcga
      721 ggcctttcac atcgacatcg gcgagtacga gcttcatgcc caacgccgca cccttcaatg
      781 cgaactcgcg gccgaaaccg ctgccggcgc ccgtgatcac ggccactttg ccgtcgaact
      841 gatccacgct gtctcctttc tatccttttg attttataaa tccgaacgtt cagatcagct
      901 tgacgagctg cttgccgaag ttcttgcctt tgagcaatcc aagaaaagct tctggggcat
      961 tttccaggcc ctgcgcaatc gtctcgcgat attgcagctt cttctgcgca acgagcccac
     1021 caagttgcgt gagcgcctcg ggccatactt ccggcgattc gctgacgata aaaccctgca
     1081 ccttcaagcg ctgcgtgagc atcaaagcgg gctttttgag cggcatcggt gaaccgtcgt
     1141 aactggcgat catcccgcac aacgcgatgc ggccgaacgc gttcatgcgt gacaacgcag
     1201 cgtccagtat ctcgccgccg acgttttcga agtaaccgtc ggccccgttc ggcaacgcgg
     1261 ccttgaggtc gtcatggagg ttgcccgctt tgtaatcgat gcatgcgtcg aaaccgaggg
     1321 tctcggtgac gtagcggcat ttgtccgccc cgcccgcgat gcccaccgcg cggcagcccg
     1381 ctgctttcgc caactggccg accacgcttc ccaccgcgcc gctcgccgca ctgaccacga
     1441 ccgtttcgcc tgctttcggc tcgatgatct tgttgagccc aagccatgct gtcacgccgg
     1501 gcatgccgac cgggccgaga tacgctgaaa gcgggatatg ggtgtcatcg actttacgca
     1561 ggcccttgcc atccgatgtg ccgaattcct gccagccgta gatcccgacc accttgtcgc
     1621 cgatcgcaaa cttcggattc ttcgattcca ccacttcacc caccgtcccg ccgatcatca
     1681 cctcgttgag cggctgcgat gcggcgtacg acttcgagtc gtccatacgg ccgcgcatgt
     1741 agggatcgag cgagaggaag tgattgcgta cgcgcacctg cccgtctgcc agtggttcga
     1801 gcggggtttc gacgagtttg aagttatcga cgcttgcggc accttgcggg cgcgaaacga
     1861 ggaggatctg gcgattgatt gaagtgtgtt ctgacatc
//
LOCUS       DATGBK010001895         1522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_253820, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001895 DATGBK010000000
VERSION     DATGBK010001895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253820"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..307
                     /locus_tag="VKJ77_26670"
     CDS             <1..307
                     /locus_tag="VKJ77_26670"
                     /inference="COORDINATES: protein motif:HMM:NF023363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3455 domain-containing protein"
                     /protein_id="HMC48926.1"
                     /translation="FDVSGNRLGRHYAGPRWESTDGSIIAGTLKERADAPLATAIPWL
                     LLSVKSVGPEGSFSKVTSVQRVNTVGGVAPKEGCSQSAVGTTARIDYTADYYFFTTK"
     gene            complement(419..553)
                     /locus_tag="VKJ77_26675"
     CDS             complement(419..553)
                     /locus_tag="VKJ77_26675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48927.1"
                     /translation="MTHLKLIAAALALFALSACVGVVFPIPLSSSTTTNDTDHNEQRR
                     "
     gene            complement(663..1274)
                     /locus_tag="VKJ77_26680"
     CDS             complement(663..1274)
                     /locus_tag="VKJ77_26680"
                     /inference="COORDINATES: protein motif:HMM:NF014659.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HMC48928.1"
                     /translation="MCARSRICGILPLILPVLAIGWIAPGYSAGLPESGTVLLVARPE
                     LQDPMYGETILIAWPIEQGRHIGFILNKPTKISLAEAFPDHGPSKAVHAPLYLGGPTK
                     VNAVFALVASHDSPGGGSTQLSPDLFLVIEANTVDHVIEFDAERARFFAGEVVWQAGE
                     LEEELKRGAWYVLDPEPDLVLPQKTERMWQQLVHRAELRENGI"
BASE COUNT          304 a          468 c          448 g          302 t
ORIGIN      
        1 cttcgacgtg agcggaaaca ggcttggccg acactatgcc ggcccgcgtt gggaatcgac
       61 cgatggcagc atcatcgccg gcacgctgaa ggaacgtgcc gacgcaccgt tggctactgc
      121 aataccttgg ctgctgctta gcgtaaagtc tgtcggcccg gaaggctcgt ttagcaaggt
      181 aacaagcgtt cagcgcgtaa acacggtcgg tggtgtcgca ccgaaagagg gttgttccca
      241 atccgcggtc gggacgacgg cgcgcatcga ctacaccgcg gactattatt tcttcaccac
      301 gaagtaactt caatgttggg cgccgtgaag cggcgtaccc tgcccaacct cgcgctccac
      361 gcgggcgcgc cgcgcgcggc gcgaactgaa cactgcgttt cgcgtgtgcc gcgcccggtc
      421 agcggcgttg ttcgttgtga tccgtgtcgt tcgtggtcgt cgaactggac agggggatgg
      481 ggaacacaac ccccacgcat gcgctcaatg cgaacagcgc caacgctgcc gcaatcagtt
      541 tcagatgtgt catgagaatt tctcgccttt ggttagcgcc gaccgaaccg ggcacggcgt
      601 aaattccacg tacgaatcat gcacaatgta tgcgcaaacc cgaaccctga tcgctcctca
      661 cattaaatgc cgttctcgcg cagttcagcg cggtgcacca gttgctgcca catcctctcg
      721 gtcttctggg gcagcaccag atcgggttcc ggatcgagca cataccaggc gccgcgcttg
      781 agctcttcct cgagctcgcc ggcctgccat acaacctcgc cggcgaagaa tcgcgcgcgc
      841 tctgcatcga attcgataac gtggtccacg gtattggcct caatgacgag gaacagatcc
      901 ggcgagagct gcgtcgagcc gccgccggga ctgtcgtggc tcgccaccag tgcgaatacg
      961 gcgttgacct tggtgggccc accaagatag agcggggcgt gaacagcttt ggaaggaccg
     1021 tggtcgggaa acgcttccgc gagcgaaatc ttggtaggct tgttgaggat aaagcctatg
     1081 tgccggccct gttcgatggg ccaggcgata agaatcgtct cgccatacat cgggtcttgc
     1141 agttcgggcc tggcaaccag caatacggta ccggattcag gcaaaccggc gctatagcca
     1201 ggcgcaatcc agcctatggc caataccggc aatatgagcg gcaagatgcc acaaatacgg
     1261 ctgcgtgcac acatgacact ctccttcggc aagaacgact ctttggctta tccgcgaggc
     1321 cgtgcgcctg gcacggtggg taagcccacc ggccagccat catcgtcagg gcgatcatcg
     1381 tcccgcccgc caatccgcgc tgtgcgtcgg cgcacatata gccaaacatt cttgcgtagc
     1441 cggtggcaat tcccgggcat tgcagcggtc gttctttatg aaacgctttt ttccgctcgc
     1501 gatgctcgac ttgcccttgc tg
//
LOCUS       DATGBK010001896         2555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_300377, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001896 DATGBK010000000
VERSION     DATGBK010001896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2555
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300377"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1433)
                     /locus_tag="VKJ77_26685"
     CDS             complement(<1..1433)
                     /locus_tag="VKJ77_26685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase N-terminal
                     domain-containing protein"
                     /protein_id="HMC48929.1"
                     /translation="MGSPASPERAAPALRELSPLSPDLPEADPDASRDARYANPFAPP
                     DELEPDGEPAPRSLFGEILDWMLAPLLLLWPMSIAVTYLVAKSIANGPFDRALETDAY
                     VLARQIAPVNGVAELRLPNATRDFLRADNVDSVFFQVLGTRGELVGGDADMPLPHDDD
                     RPQPGIVEFRDDVLRGNDIRVAYTTVEAPTLAHPVLVQVAETLDKRSQLANDIIKGVI
                     LPQFVILPLAIVLVWFGLSRGLAPLHALQANIRARRPDDLSPLEASRAPPEIAPLVAS
                     FNDLLNRLEQNMQLQKRFIADAAHQMKTPLAGLRTQAELALRQDVSAEVQRSLEQIAT
                     SSEHAARLVTQLLALARAENRMSGQIFSRVELTDLARLAVRDWVQAALAKRMDIGYEE
                     PPHPVEVEGNAVMLREMLSNLIDNAIRYTPPGGRITVRVRTDESDTRHVFLEVEDTGL
                     GIPEAERTRVVERFYRILGREGDGSGLG"
     gene            complement(1458..2201)
                     /locus_tag="VKJ77_26690"
     CDS             complement(1458..2201)
                     /locus_tag="VKJ77_26690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006049955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HMC48930.1"
                     /translation="MRILIAEDDSILADGLIRSLRQSGYAVDHVPHGVDADNALSLQT
                     FDLLILDLGLPMMSGLEVLRRLRARNSQMPVLILTAADSVDERVKGLDLGADDYMAKP
                     FALNELEARVRALTRRGAGGGPTVVKHGALAFDQVGRIASINDQVIELSARELGVLEV
                     LLQRVGRLVSKEQLVNHLCEWGEEVSNNAIEVYVHRLRKKIEPGGARIITVRGLGYSL
                     EKAVAAVTTSVPPAPANADEPVSPSPHYK"
     gene            2428..>2555
                     /gene="recA"
                     /locus_tag="VKJ77_26695"
     CDS             2428..>2555
                     /gene="recA"
                     /locus_tag="VKJ77_26695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006477913.1"
                     /note="catalyzes the hydrolysis of ATP in the presence of
                     single-stranded DNA, the ATP-dependent uptake of
                     single-stranded DNA by duplex DNA, and the ATP-dependent
                     hybridization of homologous single-stranded DNAs; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HMC48931.1"
                     /translation="MEDSKKGPGGMSAEKSKALAVALAQIEKQFGKGSIMRLGAGEA"
BASE COUNT          490 a          795 c          809 g          461 t
ORIGIN      
        1 ccgagtccgc tgccatcgcc ttcacgccca agaatgcgat agaaccgttc caccacacgc
       61 gtgcgctccg cttcaggaat gcccaatccc gtgtcttcca cttcgagaaa aacgtgccgc
      121 gtgtcagact catcggtgcg cacgcggacc gtgatccggc ctccgggcgg cgtatagcga
      181 atggcgttat cgataagatt cgatagcatt tcgcgcaaca tcaccgcgtt gccttcaacc
      241 tcgaccggat gcggcggctc ctcataacca atgtccatcc gtttagccaa cgcggcctgc
      301 acccagtcac gcacggcgag ccgcgcgaga tcggtcaact ccacgcgcga gaaaatctgc
      361 cccgacatcc ggttctccgc ccgagccagc gcgagcagtt gcgtcaccag ccgcgcggcg
      421 tgctcggaac tcgtcgcgat ctgttcaagc gagcgctgca cttccgccga tacatcctgc
      481 cgcaacgcca gctctgcctg cgtcctcaag cccgcgagcg gcgttttcat ctgatgcgcg
      541 gcgtcggcta tgaaacgctt ctgcaactgc atgttctgct cgagccggtt gagcagatcg
      601 ttgaacgacg ccaccaacgg cgcgatttcc ggcggcgctc ggctcgcttc gagcggtgaa
      661 agatcgtcgg gacgccgggc gcgaatattc gcttgcagcg catgcagcgg ggcgagcccg
      721 cgcgacaacc cgaaccagac cagcacgata gccagcggca agatcacgaa ctgcggcagg
      781 atcacgccct tgatgatgtc gttggccaac tggctgcgtt tatcgagcgt ctcggccacc
      841 tggaccagca ccggatgagc gagcgttggc gcttccaccg tcgtataagc gacgcgaatg
      901 tcgttgccgc gcagcacgtc gtcacgaaat tccacgatgc cgggctgcgg ccggtcgtcg
      961 tcgtgaggca agggcatatc ggcgtcgccg cctaccagtt cgccacgcgt accgagcacc
     1021 tggaaaaaca cgctgtccac gttatccgcg cgcaggaagt cgcgcgtggc gttcggcagc
     1081 cgcaattccg cgacgccgtt caccggcgcg atctgccgtg cgagcacgta ggcatccgtc
     1141 tccagcgcgc ggtcgaacgg cccgttggca atcgacttgg cgacgagata cgtgaccgca
     1201 atactcatcg gccacaaaag cagcagcggc gcgagcatcc agtccaggat ttcgccgaat
     1261 agcgaacgcg gcgcgggctc gccgtcgggc tcgagctcgt cgggcggcgc gaacggattc
     1321 gcgtaacgcg cgtcgcggga agcgtcggga tcggcttcgg gcaaatcggg cgaaaggggt
     1381 gacagctcgc gcaacgccgg agcggcgcgc tcgggggacg ctggcgagcc catggcgtgg
     1441 ttactcgtgg ttacttgcta cttgtaatgc gggctgggcg agacaggctc gtcggcgttt
     1501 gccggggcag gcggtacaga agtggtcacc gcggcaacgg ctttttcaag gctatagcct
     1561 aacccgcgaa cggttatgat ccgcgcgccg ccgggctcga ttttttttct tagccgatgg
     1621 acatagactt cgatcgcgtt gttgctgact tcctcgcccc actcgcaaag gtggttgacg
     1681 agctgttcct tcgacaccaa ccggccaacc cgttgcaaca ggacttcaag cacgccgagt
     1741 tcgcgcgcgg ataattcgat gacctggtcg ttgatagacg caatgcgccc gacctgatcg
     1801 aacgcgagcg cgccatgttt gacaacggtg gggccgccgc ccgcgccgcg tcgggtaagg
     1861 gcgcgtacgc gggcttcgag ttcgttcagc gcgaacggtt tggccatgta gtcatcggcg
     1921 ccgaggtcga ggcccttgac gcgttcgtcg acactgtcgg cggccgtcag gatgagcacg
     1981 ggcatctggg aattgcgggc tctgaggcgt ctcaggacct ccaggccgga catcatcggc
     2041 aggcccagat cgaggatcag aaggtcgaaa gtttgtagcg aaagtgcgtt gtccgcgtcc
     2101 acgccgtgcg gcacgtgatc cacggcatag cccgattggc ggagtgatcg aatgagaccg
     2161 tccgcgagta tgctgtcgtc ttcggcaatg aggattcgca tcgtagtgtg cgcaaaaagc
     2221 attgccggca ccgcaattcg cccggcgcgg cggtctccag gtgtagtggt gtcccgcatg
     2281 ggtcgaacgt ggcgctgaaa ctacgcgctt cgatcggact tgcaaaaaca cctgtttttt
     2341 tatacagtgt ctgcagcagt gcgcccggcc ggaaaaaagt cccaagggca tgcgccagac
     2401 gccgttcatc atagcaaagg acgattcatg gaagatagca agaaaggccc gggcgggatg
     2461 tctgcagaga agagcaaggc gcttgccgtc gcgctcgcgc agatcgagaa gcaattcggc
     2521 aaggggtcga tcatgcgact cggcgctggc gaagc
//
LOCUS       DATGBK010001897         1887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_161328, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001897 DATGBK010000000
VERSION     DATGBK010001897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161328"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VKJ77_26700"
     CDS             <1..470
                     /locus_tag="VKJ77_26700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive ion channel protein MscS"
                     /protein_id="HMC48932.1"
                     /translation="ADVDQITQMIREVGAELMADFRYRREMLGPIEVWGLDRFDPNWM
                     VVKGQIKTLPLKQWSVARAFNVRVKRKMDEIGMDVPVPQMQLRVSRESGGMDTDLNDP
                     DELMEAAPLSPVERSAAAMARDVSHKSQPAPPPTDQSVQIPPQIPTASEPGKA"
     gene            complement(536..1087)
                     /locus_tag="VKJ77_26705"
     CDS             complement(536..1087)
                     /locus_tag="VKJ77_26705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013339586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine dioxygenase family protein"
                     /protein_id="HMC48933.1"
                     /translation="MTSATSALATKSPLARLSDALDQACCLDPSSAGFALRVRTALNG
                     LSRAAGLLSDAQHESGQDCYRRHLLVADPLGRYAVAALVWRAGQASPVHGHHTWCAYT
                     VLEGTLSETLFAWDAGTNRAVQTRRHERTRGAVSFVGAGRGAIHQLGNASATGRTAVS
                     LHVYGVPGARISTHVNDLVKVAA"
     gene            1238..1714
                     /locus_tag="VKJ77_26710"
     CDS             1238..1714
                     /locus_tag="VKJ77_26710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013339585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HMC48934.1"
                     /translation="MDLIDRKLLELLQEDVTMPIAELATRVNLSQTPCWKRVQRLKET
                     GVIRAQVALCDPRKLGVGTTVFVAVKTNQHTQTWAEDFTRAVRDIPEVVEVYRMSGET
                     DYLMRVVVSDIDDYDRVYKTLIRAVPLYDVSSSFAMEQIKYSTALPVRAPLGITGN"
BASE COUNT          405 a          524 c          613 g          345 t
ORIGIN      
        1 ccgccgatgt cgaccagatc acgcagatga ttcgtgaagt cggtgcggaa ttgatggccg
       61 actttcgata tcgtcgcgag atgcttgggc ctatcgaagt gtgggggctg gaccgtttcg
      121 atccaaactg gatggtcgtg aaagggcaga tcaagaccct gccgctgaag caatggagcg
      181 tcgcacgggc atttaacgtc agggtcaagc gcaagatgga cgaaatcggc atggacgttc
      241 cggtgccgca aatgcaactg cgggtgtcaa gagaatccgg gggcatggac acggacttga
      301 acgatccgga tgagttgatg gaagcggcgc cgttgtcgcc tgtggagcgc agtgcggcag
      361 ccatggcccg cgatgtctcg cacaagtccc agcccgcgcc gccgccgaca gatcaatccg
      421 tgcaaatacc gccgcagatt ccaacggcga gtgagccggg gaaagcctag ggcagttccg
      481 cgcggctgtt tctgtatgac ccggctgaca tgcgccgacc cggtgccgac gcgttctaag
      541 cggcaacctt gacgagatca ttgacatgcg tcgagatacg cgcaccgggc acgccataga
      601 catggagcga gaccgcggtg cggcccgtgg ccgatgcgtt gcccaactgg tgaattgccc
      661 cacgtcccgc gccgacaaac gacaccgcac cgcgcgtccg ctcgtggcgg cgcgtttgaa
      721 ctgcccgatt cgtgccggca tcccatgcga acagcgtttc ggacagcgtt ccttcgagca
      781 ccgtataagc gcaccacgtg tgatggccat gtaccgggct tgcctggccg gctcgccaga
      841 cgagcgcggc gacggcatag cggccaagcg gatcggcgac cagcagatgc cgcctgtaac
      901 aatcctgccc gctttcgtgc tgggcatcgg ataaaaggcc ggctgcccgg gacaagccat
      961 tgagagccgt ccgtacgcga agcgcgaatc ccgccgacga tgggtcgaga caacaggctt
     1021 gatcgagtgc atcggacaac cgcgcgagcg gcgactttgt agcaagggca gaggtggcag
     1081 aggtcatggc gaggctcgtc aggaaggcgg aatcaggcag aaaggagcgg aaagccgagc
     1141 ttcttttata ccggtttgca tgtggaaaaa gtttccatat aatttcgcca aggcacggaa
     1201 aagtagaata atttcctaca aggggcgggc tgtgggcatg gaccttatcg atcgcaagtt
     1261 gctggagctg ctgcaggaag acgtgacaat gccgattgcc gagctggcga cgcgcgtcaa
     1321 tctctcgcag acgccatgct ggaagcgcgt tcaacggctg aaggaaaccg gcgtgatccg
     1381 cgctcaggtc gcgctgtgcg atccgcgcaa gctgggggtc ggcacaacgg tatttgtcgc
     1441 ggtgaagaca aatcagcaca cgcagacctg ggcggaggac ttcacgcgcg cggtgcgcga
     1501 cattcccgaa gtcgtcgagg tgtatcgaat gagcggggaa acggactatc tgatgcgcgt
     1561 ggtggtgtcg gatatcgacg attacgaccg tgtctataag acgctgattc gcgcggtccc
     1621 gctttacgac gtgagttcga gtttcgcgat ggaacagatc aaatattcca ccgccctgcc
     1681 tgtgcgcgcg ccgctcggga tcacgggaaa ctgaggtttt gtggcggacg tggaacgcct
     1741 tctgctgagt tgttctgatg atgggaaggg aaggttgccg caatccttct gaaatccatg
     1801 tcgggtaaga tcgtgcgctt cgtccaatcc cactcagagc ttcgatttca tgaccgatga
     1861 ccgccgcaaa aaggccccga cgcggaa
//
LOCUS       DATGBK010001898         2130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_161339, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001898 DATGBK010000000
VERSION     DATGBK010001898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161339"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VKJ77_26715"
     CDS             complement(<1..294)
                     /locus_tag="VKJ77_26715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017235337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase"
                     /protein_id="HMC48935.1"
                     /translation="MTILGIERVTYGVTDLATCRTFFSDWGLKEVAHDESHARFEAQN
                     GCTIMVVDANDPSLPPAFEAGPTLREVTWGVASAAELDALRGKFSGQPGHFETG"
     gene            complement(306..1796)
                     /locus_tag="VKJ77_26720"
     CDS             complement(306..1796)
                     /locus_tag="VKJ77_26720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019255256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HMC48936.1"
                     /translation="MNYPESSLLVSSDILIGGEWRPGRGAVYASLYPADQSINAEISA
                     ANADDAREAVEAADAAWRKSNWAGLKPHQRAAVLHRIADLITARHEALAQLQRRDNGK
                     PITETRGLVTSAANTFRYFAACVETLEESLTPSRGDFMTMSVHEPLGVVAAITPWNSP
                     IASDAQKLAPALAAGNAVVLKPAEVTPLASLALARICEEAGVPKGVLSVLPGKGSIVG
                     DALVRHPLVRKISFTGGTEVGRGIARLAADKLMPVSLELGGKSPTIVFADADIDHAVN
                     GVLYGIFSSSGESCIAGSRLFVQRSIYETFVARLVQGAKRLRVGDPSREDTQMGQLIT
                     GQHRDSVERYVALGLQEGGKLLCGGERPKGDNREQGFFYSPTILDGLTNEARIFQEEI
                     FGPVLVVLPFDDEQSLMREANDSVFGLAAGIWTNDYKRAWRMGRALETGTVWINTYKQ
                     FSISTPFGGWKDSGMGREKGHLGIREYMQQKSLYWGMNDAPLPWAN"
     gene            complement(1817..>2130)
                     /locus_tag="VKJ77_26725"
     CDS             complement(1817..>2130)
                     /locus_tag="VKJ77_26725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007178564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033735 - aspartate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate dehydrogenase domain-containing
                     protein"
                     /protein_id="HMC48937.1"
                     /translation="LSLTDERVIFEGSARDAARLYPKNANVAATIALAGLGLDQTIVR
                     LIADPKVERNVHRIVARGAFGEMSLEMCGKPLPDNPKTSALTAFSAIRALRNRAARCV
                     I"
BASE COUNT          393 a          682 c          638 g          417 t
ORIGIN      
        1 gccggtttca aagtgacccg gctgaccgga gaacttaccg cgcaaagcgt cgagttctgc
       61 tgcgctcgca acaccccatg tcacttcgcg cagcgtcgga cccgcttcga aagcgggcgg
      121 gagcgacgga tcgtttgcat cgacgaccat gatcgtgcag ccgttctgcg cttcgaaacg
      181 tgcatgactt tcgtcgtgcg caacttcttt caggccccag tcgctgaaga aggtcctgca
      241 ggttgcgagg tcggtcacgc cgtaggtaac ccgttcaatg ccgagaatag tcatgactcg
      301 ttttcctagt tggcccacgg cagcggagcg tcgttcatgc cccagtaaag actcttctgc
      361 tgcatgtatt cgcgaatgcc gagatggcct ttttcgcgtc ccatgccgct gtccttccag
      421 ccgccgaatg gcgtcgaaat cgaaaattgc ttgtatgtgt tgatccagac ggtgccggtt
      481 tccagcgcgc ggcccattcg ccaggcgcgc ttgtagtcgt ttgtccagat gccggcggcg
      541 agcccgaaga cgctgtcgtt ggcttcgcgc atgagagact gttcatcgtc gaaaggcagc
      601 acgacgagga ccggtccgaa aatttcttcc tggaagatac gcgcctcgtt ggtcaggccg
      661 tcgaggatcg tgggcgagta gaagaaacct tgttcgcggt tatcgccttt gggacgttca
      721 ccgccgcata acagcttgcc gccctcttgc agtccgagcg ccacatagcg ctcaaccgag
      781 tcgcgatgct gtccggtgat gagctgtccc atctgcgtgt cctcgcgcga cgggtcaccc
      841 acgcgcaggc gtttcgcgcc ctgcaccaga cgcgcgacga aggtttcata gatcgagcgc
      901 tgtacgaaca ggcgcgaacc cgcgatgcac gactcgcccg atgaactgaa gatgccgtac
      961 aacacaccat tcacggcatg gtcgatatcg gcatcggcga aaacgatggt cggcgacttg
     1021 ccgcccagtt ccagcgagac cggcatcagc ttgtccgctg ccagccgcgc gatcccgcgc
     1081 cccacttccg taccgccggt gaacgaaatc tttctaacca gcggatggcg taccagcgcg
     1141 tcgccgacaa tcgacccctt gcccggcaga acgctcagca cgcccttcgg cacgccggcc
     1201 tcctcgcata tacgcgcaag cgccagcgaa gccagtggcg tcacctcagc gggcttcaaa
     1261 acgactgcgt tgccggcggc caaggccggt gcaagttttt gcgcatcgga agcgatgggt
     1321 gaattccacg gcgtgatcgc cgctaccacg ccgagcggtt catgcacgct catcgtcatg
     1381 aagtcaccgc gcgaaggcgt gagtgactct tcaagcgtct cgacgcacgc agcgaagtaa
     1441 cggaacgtgt tggccgcgct cgtgaccagc ccgcgcgtct cggtgatcgg cttgccgttg
     1501 tcgcgccgtt gcagttgcgc gagcgcttca tggcgtgcgg taatcagatc ggcaatccga
     1561 tgcagcacgg ccgcgcgctg atgcggtttc aaccccgccc agttcgactt gcgccacgcc
     1621 gcatcggctg cttcgacggc ctcgcgggcg tcgtcggcat tggcagcgct gatctcggcg
     1681 ttgatcgact ggtcggccgg gtacaggctt gcataaaccg cgccgcgacc cgggcgccat
     1741 tcgccgccga tcaggatgtc gctcgataca agaagactgg attcgggata gttcatttag
     1801 gtttccttca gatcattcag atcacgcaac gagctgcacg gttgcgcaaa gcgcggatcg
     1861 cgctgaacgc cgtcagcgcg gacgtcttgg gattgtcggg aagcggcttg ccgcacattt
     1921 cgagcgacat ctcgccgaac gcgccccgcg ccacgattcg atgtacattg cgctccacct
     1981 tcgggtcggc aatgagccgg acgatggtct ggtcgagacc gagaccggcc agcgcaatgg
     2041 tcgccgcgac attcgcgttc ttcgggtaga gacgcgccgc gtcacgcgca ctgccttcga
     2101 aaatcacccg ctcatcggtc aggctcagca
//
LOCUS       DATGBK010001899         4906 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_138395, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001899 DATGBK010000000
VERSION     DATGBK010001899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4906
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138395"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            7..786
                     /locus_tag="VKJ77_26730"
     CDS             7..786
                     /locus_tag="VKJ77_26730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HMC48938.1"
                     /translation="MSNTGEFRWTSAARTNTGLVREINEDTCLEMPEHGLWAVADGMG
                     GHAVGDVASQMVIDRLERSSAPGKPVPLDERMQEARERLLAVNADLRAEAARRQVRRI
                     GSTVVLLLASERSCGYLWAGDSRLYLCRQGCLRQLTRDHSQVEELKARGQISPEEALH
                     HPGKHLITRAVGAMDTLELDADRIDLHDGDIFLLCSDGLSNEVTDEEMGGVLTTGDCR
                     QAVARLLELALQRGGRDNISVVVAQAEDIFCLDKTQINPTL"
     gene            complement(783..2075)
                     /locus_tag="VKJ77_26735"
     CDS             complement(783..2075)
                     /locus_tag="VKJ77_26735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008922371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC48939.1"
                     /translation="MKILDDIEDLPASPATSYAALLEKIEILRSTLRWSSRMERPEIE
                     KLLRQASVLRDDVMQLSHRERFVQAAVAEPQRLAGSPRERREALLARSFIFEGTFGDN
                     PKLLEALEIAEKAAPTDLPVLVDGESGTGKELMAKVIHANGARADRPYISVNCGAIPD
                     NLLESELFGHKKGAFTGASNDRKGKFESAHTGTIFLDEIGELPLAGQVKLLRVLEAHE
                     IQRVGSDEPIAVDTRIVAATNRNLRRMSEEGRFREDLFYRLSVIHLTLPPLRERRDEI
                     ALLLAYFGDEAAAALKRQPVKMTLRLREFLRTYDYPGNIRELRNLIYRIVCLAPETAD
                     IEHLPVDIRPGNSASMSSGMVASAVSLSDAKRTASDEAERAFLERGLHEVGGTVAELA
                     RRFEMNRSHVQMLLKKHGLHSKDFRNHAASAMQKDKGS"
     gene            complement(2072..>4906)
                     /locus_tag="VKJ77_26740"
     CDS             complement(2072..>4906)
                     /locus_tag="VKJ77_26740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018423716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HMC48940.1"
                     /translation="SMGVRREREVFADIAMLREYRHESSVRSSGKTELLFIPRRVIEP
                     IVANNPAALAFVTSYVAISSAGGFVAKLFDLRGKIDKAELEASVRSVGVKRVAAGKEI
                     IHQDARDDRRLYVVRQGEVRIVRKEGASEYLLATLRAGEVFGEKACLLRQEQQATAIA
                     NVDTRLLVVPEKTVHLVLERNPKLREVLEDRIRFTERELQRQKKLEVRRSLPAMLDLH
                     SKPEFGERVIRRFAWVQQAEEMDCGAASLAMICKHYEIPMTLGKLRELANVTTQGATL
                     DSLARAGDVLGFTTRGVQCTYESLRGFELPFIVHWEGYHYVVVYGMSKNQVWVADPAV
                     GFRKMDVEEFERGWSGTCLLFTAPPELGQAAAGRSPWVRFVGYLKPYKKILAHLFLAT
                     FVIQVLGVIPPLIIQNILDGVIVHQNVGLLHLLIAGLVISNVFSQLMSTIRAYLANFM
                     VRNMDFAMMSQFFRHTLSLPFSFFAKRKTGDIFARFQENHTIRAFLTESTVTTALNLL
                     MVFIYFTIMFLYNVKMTLLLIGFVIPIMALTALATPKIKNYAREVFSASTEAKSFLME
                     ALGGVETIKGMGIERTVRLKWEKKYAKSLEVQYRAQAFNIAVSLGSQMLNAATTIAIL
                     WVGANMVLTHEMTIGQLIAFNAFMGSVLTPLMGLIGLWSLLNDAGVAMERLGDVLDME
                     PEQKPEDLPSRIMLPDLQGEISLNNVYFRYGGADTEYVLENISFEIKPGELIAIVGRS
                     GSGKTTLAKLLVGFYTPTEGKMVVDGYDLNVIDKNVYRAQIGYVMQSNLLFSGTIAEN
                     VASGDEAPDRRRIEEAAKMADAHAFISKMPLGYEQIVGERGVGLSGGQIQRLCIARAL
                     YHDPRLLVFDEATSALDTQSESNILGNMQEILKGRTAVIIAHRLSTIMRADKILVLYE
                     GAIVEQGRHDELVARKGMYYQLVQKQLSAA"
BASE COUNT          955 a         1573 c         1412 g          966 t
ORIGIN      
        1 ggtctcgtga gcaacaccgg tgagtttcga tggacatcgg ccgcccgcac caacacaggt
       61 ctcgtacgcg agatcaacga agacacgtgc ctcgaaatgc ccgaacacgg tctgtgggcc
      121 gttgccgatg gcatgggcgg ccatgctgtt ggcgatgtcg ccagccagat ggtgatcgac
      181 cggctggagc gctcatcggc gcccggcaaa cccgtccctc tcgacgagcg catgcaggaa
      241 gcgcgcgagc ggctcctcgc ggtcaacgcg gacctgcgcg cggaagccgc ccggcggcag
      301 gtgcgccgga tcggcagcac ggtggtcctg ctgctggcga gcgaacggtc ttgcggatac
      361 ctgtgggcag gggacagccg gctttatctt tgccgccagg gttgccttcg acagttgacg
      421 cgcgatcaca gccaggtcga agaactgaag gcacgcggtc agatcagccc ggaagaagca
      481 ctgcatcatc cggggaaaca cctgatcacg cgtgctgtcg gcgcgatgga cacacttgag
      541 ctcgatgccg accgtattga tctgcatgac ggtgacatct tcctgctctg cagcgacggt
      601 ctgagcaatg aggtaaccga tgaggagatg ggcggcgtcc tgacaaccgg cgattgccgg
      661 caagcggttg cgcggctgct tgaactcgca ctgcagcgcg gcggacgcga caacatctcg
      721 gtcgtcgtgg cgcaggccga ggatattttc tgcctggata aaacgcagat aaacccgacc
      781 ctctagcttc ccttgtcctt ttgcatagcg gaagccgcgt ggttgcgaaa atccttcgaa
      841 tgcagcccgt gcttcttcag cagcatctgc acgtgcgagc gattcatctc gaagcgtcgc
      901 gccaattccg cgactgtccc gcccacttcg tgcaggccgc gctcgagaaa agcgcgctcc
      961 gcttcatcgc tcgccgtgcg cttggcgtcg ctgagcgaaa ccgcgctcgc aaccatgccg
     1021 ctcgacatcg atgccgaatt gccgggacgg atatcgacgg gaagatgctc tatgtcggcc
     1081 gtttccggcg ccaggcagac gatccggtag atcaggttgc gcaactcgcg gatgttgcct
     1141 ggatagtcgt aggtccgcag gaactcgcgc agcctgagcg tcattttcac cggctgccgc
     1201 ttgagcgccg ccgcggcttc atcgccgaag taagccagca gcagcgcaat ctcgtcacgc
     1261 cgctcgcgca acggtggcaa ggtcagatgg atcacgctaa gccgatagaa caggtcctcg
     1321 cgaaagcgcc cttcctcgct catgcgccgc agattgcgat tcgttgccgc cacaatccgc
     1381 gtatccaccg caatgggttc atccgatccc acgcgctgga tctcatgggc ctcaagtacg
     1441 cgcaggagtt tgacctgtcc cgctaggggc agctcaccga tttcatcgag aaaaatagtg
     1501 ccggtatgcg cgctctcgaa ctttcccttc cggtcattcg atgccccggt gaacgcgcct
     1561 ttcttgtgac caaataattc ggactccagc aggttgtccg gaatcgcccc gcaattcact
     1621 gatatatacg gcctgtccgc gcgcgcaccg ttcgcgtgaa tcaccttcgc catcagttcc
     1681 ttgcccgttc cgctctcccc gtccaccagt acgggaagat cagttggcgc cgctttttcg
     1741 gcaatctcca acgcctccag cagtttcggg ttatcgccga aagtgccttc aaatatgaag
     1801 cttcgcgcga gcaacgcctc acggcgctcg cgaggcgagc cggccaaacg ctgcggctcg
     1861 gcgacagccg cctggacgaa acgctctctg tgcgacaact gcatcacatc gtcgcgcagc
     1921 acgctcgcct gtctcagcag cttctcgatt tccgggcgct ccatgcgcga tgaccagcgc
     1981 agcgtcgaac ggagaatttc gatcttctcc agcagggcgg cgtacgaggt cgcggggctg
     2041 gccggcaggt cttcgatatc gtcgagtatc ttcatgctgc gctcagttgt ttttgcacaa
     2101 gttggtagta catgcccttg cgcgcgacga gttcgtcgtg gcgtccctgc tcgacgatcg
     2161 cgccttcata caacacgagg atcttgtctg cacgcatgat cgtactgagc ctgtgggcga
     2221 tgatcacggc cgtgcggccc ttcaggatct cctgcatatt gcccaggata ttgctttccg
     2281 attgggtatc gagcgcggag gttgcttcgt cgaataccag gaggcgcggg tcgtgataaa
     2341 gcgcgcgcgc aatacagagc cgctggatct ggccacccga caaacccacg ccgcgctcac
     2401 ccacaatctg ctcataaccc aacggcatct tgctgatgaa cgcgtgagca tcggccatct
     2461 tcgcggcctc ttcaatgcgc cggcggtccg gtgcctcgtc accgctcgca acgttctccg
     2521 caatcgtccc cgagaacagc aggttgctct gcatgacata gcctatctgc gcgcggtaca
     2581 cgtttttatc gatcacattc aggtcgtaac cgtcgactac catcttccct tcggtcggcg
     2641 tgtagaagcc gaccagcagc ttcgcgagcg tggtcttgcc ggaaccgctg cggcccacta
     2701 ttgcaatcag ctcgcccggc ttgatctcga aactgatgtt ctccagcacg tactcggtgt
     2761 cggcgccgcc atagcgaaaa tacacgttgt tcaggctgat ctcgccctgc aagtcgggca
     2821 gcatgatgcg ggacggcaaa tcctccggct tctgttccgg ctccatgtcg agcacatcgc
     2881 ctaatcgttc catcgctacg ccggcatcgt tgagcaggct ccacagaccg atcaacccca
     2941 tcagcggcgt cagcacgctc cccatgaacg cgttgaacgc gatcagctga ccgatggtca
     3001 tctcgtgcgt gaggaccatg ttcgcgccga cccacagaat cgcgatcgtg gtcgcggcgt
     3061 tcaacatctg gcttcccagc gacaccgcaa tattgaacgc ctgcgcgcga tactggacct
     3121 ccagcgactt agcgtatttc ttttcccact tcaatcgcac cgtgcgctcg atgcccatgc
     3181 ccttgattgt ttccacgccg cccagcgctt ccatcaggaa cgacttcgct tcggtcgatg
     3241 cggagaaaac ctcccgggcg taattcttga tcttcggcgt ggcgagcgcg gtcagcgcca
     3301 tgatcggaat cacgaaaccg atcaacagca gcgtcatctt cacgttgtag agaaacatga
     3361 tcgtgaagta gatgaagacc atcagcaagt tgagcgcggt cgtcacggtc gattccgtga
     3421 ggaaggcgcg gatcgtgtga ttctcctgga aacgcgcgaa gatatcgcca gtcttgcgtt
     3481 tggcgaagaa cgagaatggc agcgacagcg tatgacggaa gaactgcgac atcatcgcga
     3541 agtccatgtt gcggaccatg aagttcgcaa ggtacgcgcg aatagtcgac atcaattgcg
     3601 agaacacgtt ggagatgacc aggccggcaa tcagcagatg cagcagcccg acgttctggt
     3661 gaacgatgac cccgtcgaga atattctgga tgatcagcgg cggaatgacg ccaagcacct
     3721 ggatcacgaa cgtcgcgagg aagaggtgcg ccaggatctt cttgtacggc ttcaggtagc
     3781 cgacgaatcg gacccacggt gagcgtccgg cagctgcctg gccgagttcg ggcggggccg
     3841 tgaacagcag gcaggtgccg ctccagccac gctcgaattc ctccacgtcc atcttgcgaa
     3901 aaccgaccgc ggggtcggcc acccatacct ggttcttcga catgccgtac accaccacgt
     3961 agtggtatcc ctcccagtgg acgatgaacg gcagttcgaa accgcgcagc gactcgtagg
     4021 tgcactgaac gccgcgcgtg gtaaagccca gcacatcgcc agctcgcgca agactgtcaa
     4081 gtgtcgcgcc ctgggtcgtg acgttggcga gttcgcggag cttgccgagc gtcatgggaa
     4141 tctcgtagtg cttgcagatc atcgcaaggc tggccgcgcc gcaatccatc tcctccgcct
     4201 gctgcaccca cgcgaagcgg cgtatcactc gctcgccgaa ctcgggtttc gagtgcaggt
     4261 cgagcatggc cggcaacgag cgtcgtacct ccaacttttt ctggcgctgc aactcgcgct
     4321 cggtaaaacg gatgcggtct tccagcactt cgcgcagctt cgggttgcgt tcgagcacga
     4381 ggtgcacggt tttctcgggt acgaccagaa gccgcgtatc cacgttcgcg atggccgttg
     4441 cctgctgctc ctgccgcaag aggcaagcct tctcgccgaa gacctcgccc gctctcaagg
     4501 tggcaagcag atattcgctc gcaccctcct tgcgcacgat ccgtacttcg ccctgccgaa
     4561 ccacgtacag ccgacggtca tcgcgcgcgt cctgatggat gatctccttg cccgcggcaa
     4621 cccgcttcac gccgacgctg cgcaccgacg cctccagctc ggccttgtcg atcttgcctc
     4681 gcaggtcgaa aagcttggcg acaaaaccgc cggccgaact gatcgcgaca tagctcgtga
     4741 cgaacgcgag cgccgccgga ttattcgcca cgatcggctc aatcacgcgg cgcggaatga
     4801 acagcaattc cgtcttgccc gacgaacgca ccgacgattc atgccggtac tcgcgcaaca
     4861 tggcgatatc cgcgaacact tcccgttcgc ggcgcacgcc catgct
//
LOCUS       DATGBK010001900         1551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_91792, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001900 DATGBK010000000
VERSION     DATGBK010001900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91792"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..494
                     /locus_tag="VKJ77_26745"
     CDS             <1..494
                     /locus_tag="VKJ77_26745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006484751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HMC48941.1"
                     /translation="RPAMKKCAELGVVVLIHTGDGPYTIPTQFYPIIREFPMVNFIIG
                     HFGIQTGGNYSFESFWMAMDTPNVYCESGWCYQSRIVEFAKELPRSKIVFGTDSPPNE
                     PGMWLRELEMLCSPAPQGMDLDEDGLEDYMGNNIARLVGIEPSKPPKDLAEAEKRLKA
                     SYV"
     gene            582..>1551
                     /locus_tag="VKJ77_26750"
     CDS             582..>1551
                     /locus_tag="VKJ77_26750"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014252290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase domain-containing
                     protein"
                     /protein_id="HMC48942.1"
                     /translation="MADARLHELAGTQDFHAFVSTYRDLFPDDVLTIRQPLSADQDVT
                     ALVAELAARGRHEMLVCEQVDGLDTPLVTNVFASRSRIARLFGVEPPHLFEAYQSRAN
                     APLAPRFVANGPVLDQVTEGDAVNLDHLPMIQHFDTDRGPYITNAVIVAEDPVTGIAN
                     LSYHRSMRHARNALATSLHSRGHLWRMLQSAQQRGDVLRVAMVIGAHPLFMLAASARV
                     PFGTDERSIAGGLFNAPLELVRTPRYGIGVPAAAEFVLEGTIDPAEHAEEGPFGEFSG
                     YSSDRSTNNLLRVDTMMRRRDAWLVDVVGGPYAEHLTLARLPREAEM"
BASE COUNT          290 a          476 c          474 g          311 t
ORIGIN      
        1 tgcgtcccgc catgaagaaa tgcgcggaac tgggcgtggt cgtgttgatt cataccggcg
       61 acggaccgta caccatcccg acgcagttct atccgatcat ccgcgaattt ccgatggtga
      121 atttcatcat cggtcacttc gggattcaga ccggcggcaa ctattcattc gaatccttct
      181 ggatggcaat ggatacgccg aacgtgtatt gcgagtcggg ctggtgttat cagtcgcgca
      241 ttgttgagtt cgcgaaagag ttgccgcgca gcaagatcgt gttcggcacg gactcgccgc
      301 cgaacgagcc aggcatgtgg ctgcgtgaac tggagatgct gtgttcgccg gcgccgcaag
      361 gcatggatct ggacgaagac ggactcgaag actacatggg taacaacatc gcgaggctgg
      421 tcggcatcga gccgagcaaa ccgccgaaag atctggccga ggctgagaag cgcctcaagg
      481 cgagctatgt gtagttgatg gaagaccgcg ggcgccgtat ccgtatccga gtctgcgccc
      541 gcggtcgtct cacctcgttt atccacacgc cggagcccat catggccgat gcacgcttgc
      601 acgaactcgc ggggacgcag gactttcacg cgttcgtgtc tacctatcgc gacctctttc
      661 ccgatgacgt gctgacgatc aggcagccgt tgtccgccga tcaggatgtg actgcgctgg
      721 tcgcggaact ggcggcgcga ggccggcatg agatgctggt ctgcgagcag gtcgatggtc
      781 tggacacacc gctcgtcacc aacgtctttg catcccgcag tcgcattgcg cggctgttcg
      841 gtgtcgaacc gccgcacttg tttgaagcct atcaaagccg tgcgaatgca ccgcttgcgc
      901 cgcgtttcgt agcgaacggt ccagttctcg atcaggtcac cgaaggcgat gcagtcaacc
      961 tcgatcacct gccaatgatc cagcatttcg ataccgaccg cggcccctac attacgaacg
     1021 cggtgatcgt cgccgaagat ccggtgacgg gcatcgccaa cctcagctac caccgttcca
     1081 tgcgccacgc gcgcaatgca ctcgccacca gcctgcactc acgcggccac ctctggcgga
     1141 tgctgcaaag cgcacagcaa cgcggcgacg tgctccgcgt cgcgatggtg attggtgctc
     1201 atccactgtt catgctggcc gcttccgcac gggtaccgtt cgggacggat gagcgttcga
     1261 tagccggtgg cttgttcaac gcgccgcttg aactcgtgcg cacgccgcgt tacggcatcg
     1321 gtgtaccggc tgctgcggag ttcgtgctcg aaggcacgat cgatccggcc gagcacgccg
     1381 aagaaggtcc gttcggggag ttctccggtt attcgtcgga ccgctcgacc aacaatctgc
     1441 ttcgcgtcga caccatgatg cgccgtcgcg atgcatggct cgtcgacgtg gtcggcggtc
     1501 catatgccga gcacctgacg ctcgcgcgtt tgccgcgcga ggcggaaatg a
//
LOCUS       DATGBK010001901         2902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_184554, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001901 DATGBK010000000
VERSION     DATGBK010001901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2902
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184554"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..765
                     /locus_tag="VKJ77_26755"
     CDS             100..765
                     /locus_tag="VKJ77_26755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016347067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HMC48943.1"
                     /translation="MTQAIKAVLWDMDGTLADSEALHLSTLVAVLTHHGIEAGDDLHA
                     SIFGKTGREVHAYCCERFGIDFEYGPWSMARARHYLSEAPKMRPRPGALNVYHAVRAA
                     GTRQAIVSNSSRMLLEAGLRALDLQDPQLISISINDVRAGKPDPEPYQRAAWLLRVMP
                     GEAIVVEDSPTGARTAIAAGMRVLAWPEHESAAGTIPEGARIVHTEHELADALGVQIT
                     PQA"
     gene            928..1698
                     /locus_tag="VKJ77_26760"
     CDS             928..1698
                     /locus_tag="VKJ77_26760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012366410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HMC48944.1"
                     /translation="MTGEFKGAETAAFRPGLFDGKTVLVSGATSGIGLAIAQGFAALG
                     AQVIATGSSTSKLVGLRADTSLEGIRFEQLDVRDNDVIKRFVAGLSTLDVLVNAAGVA
                     RPVDEYRDDVFREVIDVNLTAAMRLAMAARDKLEHAHGSIVNVASMLSYIADVDVPAY
                     CASKTGILGLTRSLAHALGPAGVRVNAIAPGYHRTDMTRTLWEVPASAEKIAARSALK
                     RWGEVDDLVGATLFLASPASAFITGVTLPVDGGYATGV"
     gene            complement(1800..>2902)
                     /locus_tag="VKJ77_26765"
     CDS             complement(1800..>2902)
                     /locus_tag="VKJ77_26765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006999694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="porin"
                     /protein_id="HMC48945.1"
                     /translation="DAGFLFNNNVKGSKLYGLSSANSSRWGLQGAEDLGGGLKAIFTL
                     ENGYTLGTGALSQGGLEFGRKAFVGLKSDTYGAVALGRQYSASNDATSSFASGADWAA
                     SGLGYGTRAGDVDNVDTSNRVQNAIKYTSPNYHGVTVGILYSLGGQAGQFSRNEVTDA
                     GISYANGPIKLGASYMFTKDPYYATFGNQGNSSTPTSAAGGNNNMASRIYGGYASAGS
                     QQIITAGGSYVLGSATIALLYSNTQFQNLGQVNAIGSYGTKYNGGTATFNSGELNVKY
                     ALTPALTVAGAYIYTHNSGADGVGSAKYNQFNLGTIYSLSKRTSLYATGFFETASGID
                     STGKAAVADFSGSTYSSNNHQLAAIVGITHKF"
BASE COUNT          555 a          866 c          922 g          559 t
ORIGIN      
        1 cagcgacacc tacgatcgga tgatgcagat cttcgagcgg ctctacacga gctcgcaaca
       61 gttctacgac gacctggatc gtctcgccga ggctcatgca tgacgcaagc gatcaaagct
      121 gtcctgtggg acatggacgg cacgctcgcc gacagtgagg cgctgcattt gagcacactg
      181 gtcgccgtgt tgacccatca tggaatagaa gcgggtgacg acctgcatgc atcgatattc
      241 ggcaagaccg gccgcgaagt gcacgcgtac tgctgcgagc gatttggtat cgatttcgaa
      301 tacggcccat ggtcgatggc aagggcgcgg cactacctgt ccgaagcccc gaagatgcgg
      361 ccgcgacccg gtgcgctcaa tgtctatcac gcggtgcgcg cagcgggaac gcggcaagcg
      421 attgtgtcga actcgtcgcg catgttgctt gaagccgggc tccgcgcgct cgacttgcaa
      481 gacccgcaac tgatctccat cagcatcaac gacgtacgtg ccggcaagcc cgaccccgag
      541 ccgtatcagc gtgctgcgtg gctgctgcgc gtgatgcctg gggaagccat tgtggtggaa
      601 gacagcccga ccggcgcccg tacggccatc gcggccggca tgcgcgtgct cgcatggccc
      661 gagcatgaaa gcgctgccgg caccattccc gagggcgcgc gcattgtgca taccgagcac
      721 gaacttgccg atgcactcgg cgttcaaatc accccgcagg catgagtgat gaagccgagc
      781 ccgagaccgt agcgacgtgt gcatggcggg cgagatcatt cacaacgaac cctctccctt
      841 caatgcactc ctggttgttg tcgcgttgaa ggctatggac ggcatgcggc gtgattcgac
      901 aactaaattt aaaagcgaga caacatcatg acaggcgaat tcaaaggcgc ggaaacagcc
      961 gcgttccgtc ccggcctctt cgacggcaag acggtcctcg tatcgggcgc aaccagcggc
     1021 attggtctcg cgatcgcgca gggttttgca gcgttgggcg cacaggtgat cgcaaccggc
     1081 agctcgacca gcaagctcgt tggtttgcgt gcggacacct cgctagaagg catccgcttc
     1141 gagcaactgg atgtccgcga taacgacgtc atcaagcgtt tcgtcgccgg gctgagcacg
     1201 ctcgacgtgc tcgtgaatgc ggctggcgtg gcgcgtcccg ttgatgaata tcgtgacgat
     1261 gtctttcgcg aggtgattga cgtgaacctg acggcagcca tgcgcctggc aatggccgct
     1321 cgtgacaaac tcgaacacgc gcatggatcg atcgtcaacg tggcgtcgat gctgagttat
     1381 atcgccgacg tggatgtgcc ggcctattgc gccagcaaga ccggcattct cggcttgacg
     1441 cgctcgctgg ctcacgcgtt aggcccggcg ggcgtgcgtg tgaacgcgat tgcgccgggc
     1501 taccaccgca ccgacatgac acgcacgctc tgggaagtcc cggccagcgc ggagaagatc
     1561 gcggcccgca gcgcgctcaa gcgttggggc gaagtggacg acctggttgg cgcgacgttg
     1621 ttcctggcat cgccggcatc ggcgttcatc acgggcgtga ccttgcctgt ggatggagga
     1681 tacgcaacgg gggtgtgaaa acaaaaaaag gccttcgcta cccggcaaaa aaccggagag
     1741 agaaggccat gtgcttcaag aaacgcttgg ggatactgcc cgaagcgtca tgccactgtt
     1801 tagaacttgt gggttatgcc aacaatcgct gccaactggt ggttgttcga cgagtaggtc
     1861 gagccgctga agtcggcaac tgccgctttg cccgtcgaat cgatacccga agccgtttcg
     1921 aagaagccgg tcgcatagag cgacgtacgc ttggacagcg agtagatggt gcccaggttg
     1981 aactggttgt acttggcgct gcccacgcca tctgcgccgc tgttatgcgt gtagatgtag
     2041 gcgccagcca ccgtaagagc cggggtcaac gcgtacttca cgttcagttc gcctgaattg
     2101 aacgtagcgg tgccgccgtt gtacttggtg ccgtagctgc cgattgcatt gacctgaccg
     2161 aggttctgga actgcgtgtt cgagtacagc agggcgatcg ttgccgatcc cagcacgtac
     2221 gaaccgccgg ccgtgatgat ctgctgcgag cccgccgacg cgtagccgcc gtaaatgcga
     2281 ctcgccatgt tgttgttccc gcctgcggcc gaagtcggcg tcgacgagtt gccctggttg
     2341 ccgaacgtcg cgtagtacgg gtccttggtg aacatgtagc tcgcgccaag cttgatcggc
     2401 ccgtttgcgt acgaaatgcc tgcgtccgtg acttcgttac gcgagaattg gcctgcctgg
     2461 ccgcccagac tgtacaggat gccgaccgtc acgccatggt agttggggct cgtgtacttg
     2521 atggcgttct ggacgcggtt cgacgtatcg acgttatcga cgtcgcctgc gcgcgtaccg
     2581 tagccgaggc cggacgcagc ccagtcggcg ccggacgcga acgaggaggt ggcgtcgttg
     2641 cttgccgaat actggcggcc cagcgctacc gcaccgtacg tgtcgctctt cagtccgacg
     2701 aaggccttgc ggccgaattc caggccgccc tggctcagcg cgccggtgcc gagcgtataa
     2761 ccgttttcaa gggtgaagat tgccttgagg ccgccgccca ggtcttcagc gccctgcaaa
     2821 ccccagcgcg acgaattggc gctcgacagg ccgtagagct tgctgccctt gacattgttg
     2881 ttgaacagga acccggcgtc gg
//
LOCUS       DATGBK010001902         1894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_91840, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001902 DATGBK010000000
VERSION     DATGBK010001902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91840"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VKJ77_26770"
     CDS             <1..255
                     /locus_tag="VKJ77_26770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007582308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HMC48946.1"
                     /translation="VDDFAPDVVILDIGLPGMDGFEVAREMRTRAVTKTALLIALTGY
                     GADSDKKAARDAGFDHHLVKPVSFTAIETVIAASFASGPK"
     gene            complement(301..1107)
                     /locus_tag="VKJ77_26775"
     CDS             complement(301..1107)
                     /locus_tag="VKJ77_26775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008352672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HMC48947.1"
                     /translation="MRNPEHFTSGIPSAHDAPDFVAVSWNLHKGRSPLGLQAWSAMQR
                     WVQSTKADAYFLQEAMARRMPQPVLAASFGNPLDAPVDDIWHCQATEIATSLDLQIAL
                     GQNVFKPSWRHGNAILSPHPLDLGGRWDISAHRFERRGLLVARATFAGRSVTLLCAHL
                     ALTRAARLRQMNWIALWISKEAPEGPLVLAGDFNDWRNDSVGVFGELGMSEVATMLGE
                     SGRTYPAFSPALALDKMFVRGMKPVEWITPTQDTAWLSDHLPYMAKLRVE"
     gene            complement(1198..1701)
                     /locus_tag="VKJ77_26780"
     CDS             complement(1198..1701)
                     /locus_tag="VKJ77_26780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017772431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48948.1"
                     /translation="MLKHHTAALLLCAAIAAPFSALAQSTPPQPVKWELQVLQDGQQI
                     DSFTGTTNVGQARTDTHHHVVKNNVGCADKPAGDIDLQRTLTISPIHANSDDITLQID
                     AQETLQDSTAPVTAQGCKLPPQPRQVSATHPGLVLKPGEWSTWQIVDKNPSLTYKVRA
                     TLATAAQ"
BASE COUNT          362 a          570 c          591 g          371 t
ORIGIN      
        1 gtcgacgact tcgcgcccga tgtcgtgatc ctggatatcg gcttgccggg catggacggc
       61 ttcgaggtcg cgcgggagat gcgcacgcgc gcggtcacta aaactgcatt gctgatcgcg
      121 ttgacgggtt atggcgcgga cagtgacaag aaagcggccc gtgacgccgg cttcgaccat
      181 catctggtca aacccgtgtc gttcaccgcg atagaaaccg tgatcgccgc gtcatttgcc
      241 agcggcccga agtagaacga aaagcagaac cagaagtaga acgcgaagta aaacccccgc
      301 ttactccacc cgcagcttcg ccatatacgg cagatgatcg gacagccatg ctgtgtcctg
      361 cgtcggtgtg atccattcaa ccggtttcat tccgcgcacg aacatcttgt cgagcgcgag
      421 cgcgggtgaa aacgccggat aggtccgacc ggattcgccg agcatggtcg ccacttcgct
      481 catccccagt tcgccgaaga cccccaccga atcattacgc cagtcgttga agtcgcccgc
      541 caaaacgagc ggcccttcag gcgcttcctt cgaaatccac aacgcgatcc agttcatttg
      601 ccgcagccgc gccgcccgcg tcaacgcgag atgcgcgcac agcagcgtga ccgagcgccc
      661 ggcaaacgtg gcgcgcgcga ccagcaagcc acgacgctcg aaccgatgtg ccgagatatc
      721 ccaacgtcca ccgagatcca gcggatgcgg cgaaagaatt gcgttgccat gcctccacga
      781 tggtttgaac acgttctgcc cgagcgcgat ctgcaaatcg agcgatgtcg cgatttccgt
      841 cgcctggcaa tgccagatgt catcgaccgg ggcatcgagc ggattaccga agctcgccgc
      901 cagcaccggt tgcggcatcc ggcgcgccat ggcttcctgc aggaaatagg catcggcttt
      961 ggtcgactgc acccagcgct gcatcgcgct ccacgcctgg aggccgagcg gagagcggcc
     1021 cttgtgcagg ttccagctca cggccacgaa atcgggggcg tcgtgagcgg agggaattcc
     1081 ggaggtgaaa tgttctggat ttcgcatgcg atgaataagt taaccgcgag ttgaccgcga
     1141 aaatgaacgg cgcggtgtgg gacgcggcgg cgtcgagtgt gaccgacgcg cggcgcgcta
     1201 ctgcgcagcc gttgccagcg tcgcacgaac cttgtaggtg agcgacggat ttttatcgac
     1261 gatctgccac gtcgaccatt cgcccggctt gaggaccagc ccgggatgcg tagcgctgac
     1321 ctgacgcggt tggggcggca gcttgcaacc ctgagccgta acgggcgcgg tgctgtcctg
     1381 caaggtttcc tgcgcgtcga tctgcaacgt gatgtcgtcg ctgttcgcgt ggatggggga
     1441 aatggtgagg gtgcgctgca ggtcgatgtc gccggcgggt ttgtccgcgc aacctacgtt
     1501 gttttttacc acgtgatgat gggtatcggt gcgggcctgg ccgacgttgg tcgtgccggt
     1561 gaagctgtcg atctgctgac cgtcctgcaa aacctgcaac tcccatttga ccggttgcgg
     1621 cggcgtgctt tgcgcaaggg cgctgaaagg tgcggcgatc gcggcgcaga gcagcaacgc
     1681 tgccgtgtgg tgtttcaaca tatgtgcttt tctcctgatc cctttctgcg tctgggccat
     1741 ggcccgttcg atccgggtag cttatttctg acaatggtcc ggtgcgtgcg ttcagcgcca
     1801 aatgtttcca aaagctacct gcgcgaacgc aaaaaagtgc agcaatcttt tgtgttccgc
     1861 cccatcggga cgacgcaccg gtaatgcacc ggtt
//
LOCUS       DATGBK010001903         3275 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_323476, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001903 DATGBK010000000
VERSION     DATGBK010001903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323476"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..658)
                     /locus_tag="VKJ77_26785"
     CDS             complement(<1..658)
                     /locus_tag="VKJ77_26785"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HMC48949.1"
                     /translation="MDVARAAGVSTATVSRVLNGNATVALALQDRVREIAQNLGYTPH
                     AAARALASQRSKTIGAVIPSLENQNFALGVFALQKRLGEAGYTLLLACSYYDQEDELK
                     QVRALIADGIAGLMLVGRSHSPALYELLEKEQIPLVNGWTVDQHHPYVGFDNVAVGRR
                     IAEYLLDLGHVNFGMITQMTQHSDRAADRIMGVRAALRARGLELRHEHLIEMPHKIIE
                     G"
     gene            complement(811..1617)
                     /locus_tag="VKJ77_26790"
     CDS             complement(811..1617)
                     /locus_tag="VKJ77_26790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006051498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC48950.1"
                     /translation="MTRVLITGAAGHIGRVLRAGFQGHYALRLADIAPQAEAQAGEEI
                     VTADITRLEDLLPVMEGVDVVVHLAGIPDEDRWERIRDMNIEGCYNVFEAARQAGVKR
                     VVFASSNHAVGFHRRDRMIDNTVEPRPDSRYGISKVFGEALGRMYADKHGMSVACIRI
                     GSFRPDDQPSAPRHLFTWISHRDMVQVARRCIDYPDYHFAVVYGVSNNARNRWDNANV
                     RYLGFAPEDDAELHAAEIAAAGKAEDAREALFHGGFGCLVEFDGDPLRIN"
     gene            complement(1650..2393)
                     /locus_tag="VKJ77_26795"
     CDS             complement(1650..2393)
                     /locus_tag="VKJ77_26795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017773573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC48951.1"
                     /translation="MSNVAKSKLSDTPAAKTVERDRNIDETMRSVSDELEEQIVLGVL
                     HPRERLVEDDLCERFNLKRHVARQVLAEVERRGLVERRKNVGAVVKSYTPREVTELYA
                     LRELLEADAAKRIVFPVSSEALDALTAIQAEHDEAADAGDLRRVFRANMAFHHAFFAL
                     SESQVLTEAIREYERRTHAIRSVSIVFPQYLEKARAEHHQMIEALRAGDRESLIKLCR
                     DHLVPSRDAYLEAHHRRSVGYAAQKGQTE"
     gene            complement(2446..>3275)
                     /locus_tag="VKJ77_26800"
     CDS             complement(2446..>3275)
                     /locus_tag="VKJ77_26800"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012249818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HMC48952.1"
                     /translation="VLVDLKPSGQHYMEDLHRAGGLTTVMREMKGLLHLDALTVTGRT
                     LGEELDAAPASFPQDVVRPFDRPIFPQGGIAVLRGNLAPGGAIIKQSAASASLMEHEG
                     RAVVFEDAEDLARRIDDPELEVEAHDILVLKRIGPVGAPGMPEAGYIPIPRKLGRLGV
                     KDMVRISDGRMSGTASSTVVLHVTPEAAIGGPLAIVQTGDRIRLSVAERSIELALSDE
                     EIAARLATLPARQIDPDERGYRKLFLTTITQADQGCDFDFLQATRFTATVPGDGNKV"
BASE COUNT          616 a         1062 c          971 g          626 t
ORIGIN      
        1 ggccttctat gatcttatgc ggcatttcga tcaggtgctc gtgacgcaac tcaagcccgc
       61 gcgcacgcaa ggctgcgcgc acgcccatga tgcgatcggc cgcgcgatcg ctgtgctggg
      121 tcatctgcgt gatcatgccg aaattcacgt gcccgagatc gagcagatat tccgcgatgc
      181 gccgcccgac cgcaacgttg tcgaagccca catacggatg atgctgatcg acggtccagc
      241 cgttcaccag cggaatctgc tccttctcga gcagttcgta gagcgcgggg gaatgactgc
      301 gacccaccag catcagcccg gcaatgccat cggcgatcag cgcgcggacc tgcttgagct
      361 cgtcctcctg gtcatagtac gaacaggcca gaagcagcgt atagcccgct tcgccaagac
      421 gtttctgcag cgcgaatacg ccgagcgcga aattctggtt ttcaagcgaa ggaatgaccg
      481 cgccgatggt ctttgagcgc tgcgacgcaa gcgcgcgcgc ggccgcatgt ggcgtgtagc
      541 caagattttg cgcgatctcg cgtacccggt cctgcaacgc caaggcgacc gtggcgttgc
      601 cgttcagaac acgcgatacg gtcgccgtgg aaactcccgc ggcacgcgcg acgtccatga
      661 cggaaaccgc gttggacttg cggcgcggcg ccctcttttt taattctgtg ttcaacgtcc
      721 acctgtctct cgtcgtaggg tcatgaagga tgtcactcac gaccgcatac tataacgcga
      781 cgcactcctc ccaacgatgg acagccacac tcaattgatc cggagcggat cgccgtcgaa
      841 ttcgaccagg cagccgaagc cgccatgaaa cagcgcttcg cgcgcgtctt ccgcctttcc
      901 agcggccgcg atctcggccg cgtgcaattc ggcatcgtct tccggcgcga acccgagata
      961 gcgcacgttg gcgttgtccc agcgattgcg cgcattattc gataccccat acaccaccgc
     1021 aaagtggtaa tccggatagt cgatacagcg gcgcgcaacc tgcaccatgt cgcggtggct
     1081 aatccaggtg aagaggtgcc gcggcgcgct cggctggtcg tcggggcgaa acgacccgat
     1141 gcggatgcac gcgaccgaca tgccgtgttt atcggcgtac atccggccga gcgcctcgcc
     1201 gaacaccttc gagatgccgt agcggctgtc cgggcgcggc tcgaccgtgt tatcgatcat
     1261 tcggtcgcgt cgatgaaaac ccactgcatg attggaactc gcgaacacca cgcgcttgac
     1321 ccccgcttgc cgcgccgctt caaacacgtt gtagcagcct tcaatgttca tatcgcggat
     1381 gcgctcccag cgatcctcgt cgggaatacc ggcaagatgg acgacaacgt cgacaccttc
     1441 catgaccgga agtagatcct ccagccgcgt gatgtccgcg gtcacgattt cctcgcccgc
     1501 ctgcgcctcg gcttgcggcg caatgtcggc caggcgcagc gcatagtggc cctggaaacc
     1561 ggcgcgaagc acgcgtccaa tgtggccggc cgcgccggta atcagtactc gagtcattga
     1621 taccctccct gtgattcagg taaatgcggt tattcggttt ggcctttctg cgcggcgtag
     1681 ccgaccgagc ggcggtggtg cgcctcaaga tacgcatcgc gcgatggcac caggtggtcc
     1741 cggcataact tgatcaacga ttcccggtcg cccgcccgca gcgcctcgat catctggtga
     1801 tgctcggcgc gagccttttc cagatactga ggaaacacga tcgatacgga acggatcgca
     1861 tgcgtgcggc gttcatactc gcgaatcgct tccgtcagca cctggctttc cgagagcgca
     1921 aagaacgcat ggtgaaacgc catgttggcg cggaacacgc gccgcagatc accggcgtcg
     1981 gccgcttcgt cgtgctctgc ctgaatggcc gtgagcgcgt cgagcgcctc gctgctcacc
     2041 ggaaaaacga tacgcttcgc cgcgtcggct tcgagcagtt cgcgtagtgc gtacagttcg
     2101 gtgacctcgc gcggggtgta cgacttgact accgcgccta cgttctttcg gcgctccacc
     2161 agcccgcgcc gctccacctc cgccagcacc tgccgcgcga cgtggcgctt caggttgaag
     2221 cgctcgcaca aatcgtcttc cacgagccgt tcgcgcggat gcagaacgcc aaggacaatt
     2281 tgctcctcga gttcatcgga gacgctgcgc atcgtttcgt cgatattgcg atcgcgctcg
     2341 accgtcttcg cggcgggtgt atcggagagt ttggacttgg caacgttgct cataaaagga
     2401 tccgcaaaat gatctaagcc gcgagcctat acgaaaatgt ggccgtcaaa ccttgtttcc
     2461 gtcgccggga acggtcgcgg tgaagcgggt cgcttgcaaa aaatcaaagt cgcagccctg
     2521 gtcggcctga gtgatcgtgg tcaggaagag cttgcgataa ccccgctcat cgggatcgat
     2581 ctgacgcgcg ggtaaggtcg cgagacgcgc tgcaatttct tcgtcgctga gggcaagttc
     2641 gatcgaccgt tctgccacgc tgaggcgaat ccggtcgccc gtttgtacga tcgcgagcgg
     2701 accgccgatc gccgcttccg gtgtcacgtg caggaccacc gtactggacg cggtaccact
     2761 catgcggcca tccgaaatgc gcaccatgtc cttgacaccc aggcgaccga gtttgcgcgg
     2821 gatcggaatg tagcccgctt ccggcatccc gggtgcaccg accgggccga tccgcttgag
     2881 cacaagtatg tcgtgcgctt ccacctccag ttccggatca tcaatacggc gagccagatc
     2941 ctccgcatcc tcgaacacga cggcccggcc ttcgtgctcc atcaggctgg cgcttgccgc
     3001 tgactgcttg atgatcgcgc cacccggcgc gagattgcca cgcaacaccg caatgccgcc
     3061 ttgcggaaaa atcgggcggt caaacgggcg gaccacgtct tgcggaaagc tggcaggggc
     3121 ggcgtccagt tcctcgccga gggtacggcc ggtcaccgtg agcgcgtcga gatgcagcag
     3181 gcctttcatc tcgcgcatga ccgtggtcaa accgccggcg cgatgcaggt cctccatgta
     3241 gtgctgtccc gacggcttca aatcgaccag caccg
//
LOCUS       DATGBK010001904         1603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_300529, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001904 DATGBK010000000
VERSION     DATGBK010001904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300529"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..696
                     /locus_tag="VKJ77_26805"
     CDS             22..696
                     /locus_tag="VKJ77_26805"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019924190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HMC48953.1"
                     /translation="MTVRIEASWKEHLQGEFEQPYWEPLTSFVKAEYAAGPCCPAGKN
                     IFRAFDLTPFDQVKVVILGQDPYHTPGAAMGLCFSVPDGNRPQPSLQNIFKEINSDLG
                     VQRTQTDLTDWAEQGVFLLNSVLTVRAHEAGSHAKQGWENFTDSAIKHLSDEREGIVF
                     ILWGSYAIAKQAFIDSRKHRVITSPHPSPLSAHRGFFGSKPFSRTNDYLASKNEAAID
                     WAGSSS"
     gene            785..1204
                     /locus_tag="VKJ77_26810"
     CDS             785..1204
                     /locus_tag="VKJ77_26810"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008443202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HMC48954.1"
                     /translation="MDAKFTPEYFNQFGKGHLPEHLGIVITAVSEGEVRAEFDVASQL
                     LAPNGFLHAGSVVTLADTACGYACVAHLPEGAANFTTIELKSNHLGTARDGTVVATAK
                     AVHLGKTTQVWDATVTHKATGKTIALFRCTQMVLYPK"
     gene            1297..>1603
                     /locus_tag="VKJ77_26815"
     CDS             1297..>1603
                     /locus_tag="VKJ77_26815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019924189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 truncated hemoglobin"
                     /protein_id="HMC48955.1"
                     /translation="MEVKRIAALGLLLSVALAAPLASAQTPYTDDAVYQGLGGKDGIK
                     HIVATFIPMVLADPRIKDTFTDFDMDQLAVRLGEQFCEFSGGPCQYTGQHRDKTMDGV
                     "
BASE COUNT          337 a          481 c          479 g          306 t
ORIGIN      
        1 tgatcaaaag tggggtcggc tatgacagta cgtattgaag catcctggaa agaacatttg
       61 cagggcgagt tcgagcaacc gtattgggag ccgctgacgt cgtttgtcaa agccgagtat
      121 gcggctgggc cgtgttgtcc ggcggggaag aatatctttc gcgcgtttga tttgacgccc
      181 ttcgatcagg tcaaagtggt gatactcggg caggacccgt atcacacgcc aggcgcggcg
      241 atggggctgt gcttttcggt gccggacggg aaccggccgc agcccagcct gcaaaacatc
      301 ttcaaggaaa tcaacagcga cctcggcgtg cagcgcactc aaaccgatct gaccgactgg
      361 gccgaacaag gcgtgttcct gctcaacagc gtgctgacgg tgcgcgcgca cgaagccggt
      421 tcgcacgcga aacagggttg ggagaacttt accgacagcg cgatcaagca tttgtccgat
      481 gagcgcgaag gcatcgtctt cattttgtgg ggcagctacg ccatcgccaa gcaagcgttt
      541 atcgacagcc gcaagcaccg cgtcatcacc tcgccgcacc cgtcgccgtt gtcggcgcac
      601 cggggcttct tcggcagcaa gccgttttcg cggactaacg attatctggc ctccaaaaat
      661 gaggcggcca tcgactgggc cggttcttcg tcgtaacacc ggagttgtaa aataagccag
      721 ccaaaagttg ctatcatcgc ggccttcgcg gcgcgggtgc gccgatcacc attaaagatg
      781 acgcatggac gctaaattta ccccggaata tttcaaccag ttcggcaagg gccacctgcc
      841 tgaacacctc ggcatcgtga tcaccgccgt gtccgaaggc gaagtgcgcg ccgaattcga
      901 cgtcgcgtcc cagctgctgg cgccgaacgg cttcctgcac gccggcagcg tcgtcacgct
      961 ggccgacacg gcctgcggct acgcctgcgt cgcccacctg cccgagggcg cggccaattt
     1021 caccaccatc gagctgaaat cgaaccacct cggcacggcg cgcgacggca ccgtcgtggc
     1081 gacggccaag gctgtccatc tgggcaagac cacgcaagtc tgggacgcca ccgtcaccca
     1141 caaggcgact ggtaaaacga tagcgttgtt ccgttgcacg caaatggttc tctatccgaa
     1201 ataagccatc cttggcgcgc ggttttgcta ttgcctgccg ccatgatctg ataaatttgt
     1261 tgcgtatgtg aacctggccc aagggacata aaaatgatgg aagtcaaaag aatcgccgcg
     1321 cttggattgt tgctgagcgt agcgctggcc gcgccgctgg cgtcggcgca aacgccttac
     1381 acggacgatg cggtctatca gggcctgggc ggcaaggatg gcatcaagca catcgttgca
     1441 acctttatcc cgatggtgct ggccgacccg cgcatcaagg atactttcac cgatttcgat
     1501 atggaccagc tggccgtgcg cctgggcgag cagttctgcg agttcagcgg cggtccgtgc
     1561 cagtacaccg gccagcaccg cgacaagacc atggacggcg tgg
//
LOCUS       DATGBK010001905         1542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_184627, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001905 DATGBK010000000
VERSION     DATGBK010001905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184627"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VKJ77_26820"
     CDS             <1..227
                     /locus_tag="VKJ77_26820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48956.1"
                     /translation="PLSLLHKELGVRERQRNKHDAEPLVSSSLTAYPYKNSEKSAFTP
                     FYLESDVTTAIAAEAIKERQFWRGIRENLP"
     gene            complement(409..>1542)
                     /locus_tag="VKJ77_26825"
     CDS             complement(409..>1542)
                     /locus_tag="VKJ77_26825"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48957.1"
                     /translation="LAVLGHGDIVASAAYSPDGTRIVTASNDKTARIWDARTGAKLAV
                     LSGHGDLLESAAYSPDGTRIVTASNDKTARIWNARVPATLEGQFIWEASAQTDSLSDL
                     DRTRLGLPPDSRVETRSSKPSACDRAAAAFYDPDRLAPGAAQSDINGDIANSACSAEI
                     TKAGHSARSDYQMGRALWAKHDVKGARQQFELAVSGGYRAARVDLASLLVDASGGMLD
                     PERAVSLYEKAWREGVQIAAFELGHLYEEGVSGSDAAAPGKLQPDLAKAWSWYQKGAN
                     AGEPNALARFAERDDHNAVAQNDPPKRNALLLQAFRLYAAAAERAHDEDWPDNAWRHW
                     RYRRATLARLLAREGMMQQVADEYTAIHDRAIRPNPKRFLTGN"
BASE COUNT          313 a          471 c          448 g          310 t
ORIGIN      
        1 acccactttc ccttctgcat aaagagttgg gagttcggga gcgccaacga aataagcatg
       61 atgctgagcc gttagttagc tcctcgctca cggcatatcc atacaaaaac tcggagaagt
      121 ccgctttcac gcctttttac cttgagtcgg acgttacaac cgcgatagcg gctgaggcca
      181 ttaaagagcg gcaattctgg cgtggcatac gcgaaaatct tccctgaaac ccgcgatcat
      241 ttccgcaact cccgcaatcg gacccaatac cggcgcgcat tcatacttcc aaacatctat
      301 tgatgactcg acgaatcggc aatggatgaa gggctaccgt caacgccgat gcaagcttta
      361 tcgcggaaca aaatcaccat ctctccgaac gcgtttcaat tcgacgtact aattgccagt
      421 taggaacctc tttggatttg ggcgaatcgc cctgtcgtga attgcagtgt attcatctgc
      481 cacctgctgc atcatgcctt cgcgcgcgag caggcgagcg agcgtcgcgc gccgataacg
      541 ccagtgcctc caggcattgt ccggccaatc ctcatcgtgc gcacgctcgg cagcagccgc
      601 gtataaacgg aaggcctgaa gcagaagcgc atttctcttc ggcgggtcgt tctgcgcgac
      661 ggcattgtgg tcgtcccgct cggcaaagcg ggcaagcgcg ttcggttcgc ccgcgttcgc
      721 tcccttctga taccaagacc aggcctttgc aagatctggc tgaagcttgc ccggcgcagc
      781 ggcgtctgag cctgaaacac cctcctcgta gagatgaccg agttcgaaag ccgcgatctg
      841 taccccctcc cgccatgcct tttcgtagag cgacaccgca cgctcaggat cgagcatccc
      901 accggatgcg tctaccagca ggcttgcgag gtcgacacgt gcggcgcgat agccgcccga
      961 cactgcgagc tcgaattgct gcctcgcgcc cttcacgtcg tgcttcgccc ataacgcgcg
     1021 ccccatctga tagtccgatc gcgcggaatg cccagccttt gtaatttccg cagagcaggc
     1081 ggagttggcg atatccccgt tgatatcgga ttgtgccgcg ccaggtgcca aacggtccgg
     1141 atcatagaat gcggcggccg cccgatcgca cgcagaaggt ttcgatgatc gggtctctac
     1201 acgcgaatcg ggaggcaggc cgagccgagt tcgatcgagg tcggacagtg aatcggtctg
     1261 cgccgatgct tcccagatga attgtccttc gagagtcgct ggaacgcgcg cattccagat
     1321 gcgcgcggtc ttgtcattcg aggcggtgac gatgcgcgtg ccgtcgggcg agtaggcggc
     1381 ggactcgagg agatcgccat ggcccgagag cacggcaagc tttgcaccgg tgcgcgcatc
     1441 ccagatgcgc gcggtcttgt cattcgaggc ggtgacgatg cgcgtgccgt cgggcgagta
     1501 ggcggcggaa gcgacgatat cgccatggcc gagtacggca ag
//
LOCUS       DATGBK010001906         1668 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_300574, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001906 DATGBK010000000
VERSION     DATGBK010001906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300574"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1038)
                     /locus_tag="VKJ77_26830"
     CDS             complement(<1..1038)
                     /locus_tag="VKJ77_26830"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HMC48958.1"
                     /translation="MDLTFTPQDNAFRAEVRDFIARELPADVRRKVQAGENLVKDDMA
                     RWHAALYKQGWVAPGWPKQYGGTGWNAVARHIFYEEIAYGWAPRLPPFGINMVAPVIT
                     EFGNDEQRARYLPKILSGEEWWCQGYSEPNSGSDLAALEMRAEPRDGGYVINGTKTWI
                     TYAQYADWIFVLARTNESPKKQEGISFILVDMKTPGVTVRPIETIDGGREINEVHLEN
                     VVVPKENLVGEEGGGWTYAKFLLEHERTGTAGIATCKRMIEQLRELVAREGARDPRIE
                     ERIARVEIELEAIAITELRTLAAESAGKRPGPESSILKVKGTEIQQAISELALDVTGP
                     YADASTTRTYLN"
     gene            1077..>1668
                     /locus_tag="VKJ77_26835"
     CDS             1077..>1668
                     /locus_tag="VKJ77_26835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019561487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HMC48959.1"
                     /translation="MFDIAGKVALITGSTRGIGQAIAERMAEAGAKVVISSRKADACT
                     AVADGITAKGGTAIAQAANISDKAALQALVDRTIAQWGRIDILVCNAAVNPYYGPLGG
                     ISDDAFDKIMSSNVRSNLWLCNMVIPQMAERKDGAVIIISSIAGLKGNSMLGAYGISK
                     AADFQLARNLAVEWGPSNVRVNAIAPAIIRTDFAKKL"
BASE COUNT          323 a          497 c          494 g          354 t
ORIGIN      
        1 gttcaaatac gttcgcgtcg tgctcgcatc ggcgtagggg ccggttacat cgagcgcgag
       61 ttctgaaatc gcttgttgaa tctcagtccc cttgactttg aggatcgagg actccgggcc
      121 gggacgcttg cccgccgatt ccgccgcgag cgtgcgcagc tccgtaatcg cgatcgcttc
      181 cagttcgatc tcgacacgcg cgatgcgttc ctcgatgcgc gggtcgcgcg cgccttcgcg
      241 tgcgacgagt tcccgcaatt gttcgatcat gcgtttacag gtcgcgatgc cggcggtgcc
      301 ggtgcgttcg tgttcgagca aaaactttgc gtaggtccag ccgccgcctt cctcgcccac
      361 gaggttctct ttaggcacga cgacgttctc aagatggact tcgttgatct cgcggccgcc
      421 gtcgatcgtc tcgatcggac gcacggtaac gcccggcgtt ttcatgtcga cgagaataaa
      481 cgagatgccc tcttgttttt tcggcgactc gttcgtgcgg gcgagcacga atatccaatc
      541 cgcgtattgg gcgtacgtaa tccacgtttt tgtaccgttg ataacgtagc cgccgtcgcg
      601 tggctccgca cgcatttcaa gtgcggctaa atcggaaccc gaatttggtt cggaataccc
      661 ctggcaccac cactcctcgc ctgacagaat cttcggaaga tagcgtgcgc gctgttcgtc
      721 atttccaaac tcggtaatca ccggcgcgac catgttgatc ccgaagggcg gcaaacgtgg
      781 tgcccagccg taagcgatct cttcgtagaa gatgtggcgc gcaacggcgt tccagcccgt
      841 gccgccatac tgcttgggcc acccgggcgc cacccagccc tgtttgtata acgccgcgtg
      901 ccagcgcgcc atatcgtctt tgacgagatt ttcgccggcc tgtactttgc ggcgaacgtc
      961 agcgggcagt tcccgcgcaa tgaagtcgcg gacttcggcg cggaaggcat tatcttgcgg
     1021 ggtgaacgtt aaatccatac cgtagcctgt gtacctcgga gcgggagagg agaactatgt
     1081 tcgacatcgc cggaaaagtt gcgttaatca ccggttcaac gcgtggaatc ggacaagcga
     1141 ttgcggagcg catggccgaa gccggcgcca aagtcgtgat ttcgagtcgt aaagccgacg
     1201 cctgcaccgc cgtggcggat ggcataaccg ccaaaggcgg cacagcgatc gcgcaagccg
     1261 cgaacatttc cgataaggcc gcactgcagg cgcttgtcga ccgcacgatt gcgcagtggg
     1321 gacgcatcga tatcctggtc tgcaacgcgg ccgtcaatcc ctattacggg ccactcggcg
     1381 gcatcagcga cgacgcgttc gacaagatca tgagcagtaa cgtccggtcg aatttgtggc
     1441 tgtgcaacat ggtcattccg cagatggccg agcgaaaaga tggcgccgtc atcatcatat
     1501 cgagtatcgc ggggctcaag ggcaactcga tgctcggagc ctacggcatt tccaaagcgg
     1561 ccgacttcca gttggcgcgt aatctagccg tggaatgggg cccgagcaac gtgcgcgtca
     1621 atgctatcgc gcctgcgatc atccgcacgg attttgcgaa aaagctct
//
LOCUS       DATGBK010001907         2690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_138585, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001907 DATGBK010000000
VERSION     DATGBK010001907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138585"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..289)
                     /locus_tag="VKJ77_26840"
     CDS             complement(<1..289)
                     /locus_tag="VKJ77_26840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007584674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-binding protein"
                     /protein_id="HMC48960.1"
                     /translation="MKKFVTVSAVFCTALTLASAAVAADEMAGMKMDNGAMSAAKPGK
                     SQLTDAVVKKVDPSTGMVTLQHGALTNIGMSAMTMAYKAKDAAMIDHVKEGD"
     gene            complement(286..>2690)
                     /locus_tag="VKJ77_26845"
     CDS             complement(286..>2690)
                     /locus_tag="VKJ77_26845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012338825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CusA/CzcA family heavy metal efflux RND
                     transporter"
                     /protein_id="HMC48961.1"
                     /translation="RGIAELNGEGEVAGGVIVMRSGKNALTTIDAVKAKFADLKKSLP
                     PGVEVVTTYDRSQLIERAVDNLKDKLIEEFIIVGLVCAVFLFHLRSAFVAILSLPLGV
                     LTAFIVMRYQGVNANLMSLGGIAIAIGAMIDAAIVMIENAHKHLEAYDHEHPNSPITN
                     AQRWELIAESAAEVGPALFFSLLIITLSFIPVFSLEGQEGKLFAPLAFTKTYTIAAAA
                     GLSVTLVPVLMGFLIRGRIPHENANPINRVLIRLYRPLLEATLRRPWVAIGLAVVALA
                     ITLIPVSRLGGEFMPPLDEGDLLYMPTALPGISADKAAELLQQTDRLIKTVPEVKTVF
                     GKSGRADTATDPAPFEMFETTIQFKPRSEWRPGMTPEKLVDELDARVKIPGLSNVWVP
                     PIRNRLDMLSTGIKTPVGVKISGADLGQIDKIATQVESVLKNVPGVTSALAERLNGGH
                     YIDVDIDRLAAARYGMSVTDVQSIVSTAVGGDNVGEVIAGRERFPINIRYPREIRDSV
                     DNLRQLPVVTDRGAQITLGDVATVKISDGPPMIRSENARLSGYVYVDIRDVDLQSAVK
                     AMQLAVAQHVVLPPGYSIAWSGQFEYLERAAAKLRTVIPVTLVVIFVLLFLTFNSAAD
                     ALLLMSTVPFALVGGFWLIWILGHAVSVATAVGFIALSGVAAEFGVVMLLYLKGSLNR
                     RLEEGAPFTEATLVDAIREGAVLRVRPKAMTVAVVLAGLIPIMLGHGAGSEVMQRIAA
                     PMVGGMVTAPLLSMLIIPAAWLLLQRRKIARTQTKTEEPLQPHAVPTGTLVPQTQSGE
                     NQ"
BASE COUNT          538 a          827 c          798 g          527 t
ORIGIN      
        1 tgtcgccttc cttgacgtgg tcaatcatcg ccgcgtcctt ggccttgtat gccatcgtca
       61 tcgccgacat gccaatgttg gtcagtgcgc cgtgctgaag cgtcaccatg ccagtcgatg
      121 ggtccacctt cttgaccaca gcgtcggtca gttgcgattt gcccggtttg gcggcgctca
      181 tggcgccgtt gtccatcttc atgccggcca tttcgtccgc agctaccgcg gcgctggcga
      241 gcgtaagagc ggtacagaat acggcggata cggtaacgaa cttcttcatt ggttttctcc
      301 agattgagtt tgcggcacaa gcgtgccagt gggtactgcg tgaggttgaa gcggttcctc
      361 ggttttcgtt tgggtgcgcg caatcttccg gcgttgcagc agcagccagg cggccgggat
      421 gatcagcatc gacaggagcg gtgcggtcac catgccgcca accattggcg cggcgatccg
      481 ctgcatcact tccgaccctg caccgtggcc gagcatgatc ggaatgaggc ccgccagcac
      541 gaccgcgacg gtcattgcct tgggtctcac gcgcaagaca gcgccctcgc gaattgcatc
      601 gacgagcgtt gcttcggtaa agggcgcgcc ttcctctagt cgacggttga gcgaaccttt
      661 tagatacagc agcatcacaa cgccgaattc ggccgcgacg cccgagagcg cgatgaaccc
      721 gacagcggtc gcgaccgaca ccgcatgtcc caggatccag atcagccaga agcctccgac
      781 cagtgcgaag ggcacggtcg acatcagtaa aagcgcgtca gccgccgagt tgaacgtcag
      841 gaagagcagc acgaaaatga cgacgagcgt caccggaatc acggtccgca atttcgcggc
      901 tgctcgctcc agatactcga actggccgga ccacgcgatg gaatagccgg gcggcagtac
      961 aacgtgctgt gcaaccgcaa gctgcatcgc cttcacggcc gactgcaagt ccacatcgcg
     1021 aatgtcgacg tagacgtaac ccgacaagcg agcgttctcg ctacggatca tcggtggccc
     1081 atcggagatc ttgacggtgg ctacgtcccc tagcgtgatc tgcgcccccc ggtcagtcac
     1141 gaccggcaac tgacgcagat tgtcgacgga gtcccggatc tcccgcggat agcgaatgtt
     1201 gatcgggaaa cgctcgcggc ccgcaatgac ttcgccgacg ttgtcgccgc cgaccgccgt
     1261 cgacacgatg gactggacgt cagtcaccga catgccatag cgggctgcag ccaaccggtc
     1321 gatatcgacg tcgatgtagt ggccgccgtt caagcgttcc gctagcgccg acgtgacgcc
     1381 tggaacgttc ttcaagacgg actcgacctg cgtggcgatc ttgtcgatct gcccaaggtc
     1441 cgcgccagag atcttcacgc ccacgggcgt cttgatgcca gtcgacagca tgtccaggcg
     1501 attgcgaatc ggcggtaccc agacgttcga caggcccgga atcttcacgc gtgcgtcgag
     1561 ttcatccacc agcttctcgg gcgtcatgcc gggccgccat tcgctgcgtg gcttgaactg
     1621 aatagtggtc tcgaacatct cgaacggcgc cgggtcggtc gcggtgtcgg cacgtcctga
     1681 tttgccgaac acggttttca cctccggaac cgttttgatc agacggtctg tttgctgaag
     1741 caactcggcg gctttatccg ctgaaatgcc gggtagtgca gtcggcatgt acagcaggtc
     1801 gccttcgtcc agcggtggca tgaattcgcc acctagtcgc gacacaggaa tgagcgtgat
     1861 ggcgagtgcg acgaccgcca gcccgatcgc gacccacggc cgtcgcagcg tcgcttcgag
     1921 caacgggcga tacagcctga tcaacacgcg gttgatagga ttggcgtttt cgtgcggaat
     1981 gcgaccccgg atcagaaaac ccatcagcac gggcaccagc gttacggaca atcctgcagc
     2041 tgcagcgatt gtgtacgtct tcgtgaacgc tagcggagca aagagcttgc cctcctggcc
     2101 ttcgagcgag aagaccggga tgaacgacag cgtgatgatg agcagcgaga agaacaaggc
     2161 tggcccaact tcggctgctg actcagcgat cagttcccat cgctgagcgt tcgtgatcgg
     2221 actattcgga tgctcgtggt cgtacgcttc cagatgcttg tgcgcgtttt cgatcatcac
     2281 gatggccgca tcaatcatcg cgccgatggc gatcgcaata ccgcccaacg acatcaggtt
     2341 cgcgttgacg ccctgatagc gcatgacgat gaacgccgtc agcacaccga gcggcagcga
     2401 caagatcgcg acgaacgcac tgcgcaggtg aaacaggaac actgcgcaga ccagcccaac
     2461 gatgatgaac tcttcgatga gcttgtcttt caggttgtcg acagcacgct cgatgagttg
     2521 cgagcgatca tacgtcgtca cgacctcgac gcctggtggg agcgattttt tcaaatcggc
     2581 gaacttggct ttgactgcat cgatggtcgt cagcgcgttc ttgccagagc gcatcacgat
     2641 tacgccgccg gccacttcgc cttcgccgtt caactcggca atgccacggc
//
LOCUS       DATGBK010001908         3175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92011, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001908 DATGBK010000000
VERSION     DATGBK010001908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92011"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..465)
                     /locus_tag="VKJ77_26850"
     CDS             complement(<1..465)
                     /locus_tag="VKJ77_26850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3106 domain-containing protein"
                     /protein_id="HMC48962.1"
                     /translation="MSYKRGLAIVFGCAIAGLVAFAATYPRFYSSASAVPVAAAPVGA
                     SAGEVLSPLSSLASPTSPMAWARLTDAQRVALAPFASQWDQFSEERKRNWIKIASRYK
                     KMTPDAQKHLHERMAEWVRMTPDQRKVARENYQVSKSVPAEKRVRAWDAYQKL"
     gene            complement(484..930)
                     /locus_tag="VKJ77_26855"
     CDS             complement(484..930)
                     /locus_tag="VKJ77_26855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007588183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3619 family protein"
                     /protein_id="HMC48963.1"
                     /translation="MSNALDHKETEFALKVRRALDENVNSLPAASLDKLAAARRTAIA
                     RKKPEKVAVAAPVFAPALAGAGMAGPGSLGPAGSGHAGKRGRFSRLALAWPLLALVIG
                     LAGIAYFEDQQRTAELADIDAAMLSDNLPLDAYLDHGFNAYLTRNH"
     gene            complement(927..1490)
                     /locus_tag="VKJ77_26860"
     CDS             complement(927..1490)
                     /locus_tag="VKJ77_26860"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HMC48964.1"
                     /translation="MASDKELADFLAGVERRAFKQTVYTVRDDDAALDIVQDAMIKLA
                     EKYGDRPPPELPLLFQRILQNATHDYFRRQKVRNTWVSLFSSFGNADDDEFDPLETFE
                     SQDGTVGAESSESRLEREQVLNLIDAEIQKLPARQREAFLMRYWEDMDVAETAAAMGC
                     SEGSVKTHCSRATHALAHALKAKGITL"
     gene            1874..>3175
                     /gene="ilvB"
                     /locus_tag="VKJ77_26865"
     CDS             1874..>3175
                     /gene="ilvB"
                     /locus_tag="VKJ77_26865"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004185769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HMC48965.1"
                     /translation="MNMPSAEFSTSDTTPPLEAESIGGTVLMRALADEKVEFIWGYPG
                     GSVLYIYDELYKQDEIQHILVRHEQAAVHAADAYARSTGNVGVALVTSGPGVTNAVTG
                     IATAYMDSIPIVIISGQVPTAAIGQDAFQECDTVGITRPCVKHNFLVKDVRDLAATVK
                     KAFYIARTGRPGPVLIDIPKDVSKTPCKYEPIKSVALRSYNPVTKGHSGQIRKAVQLL
                     LSAKRPYIYTGGGIILANAARELNQFADLLGYPVTNTLMGLGGYRADNKKFLGMLGMH
                     GTYEANMAMQHCDVLIAIGARFDDRVIGDPEHFASHAKKIIHIDIDPSSISKRVKVDI
                     PIVGDVKEVLKELIEQLQTAEHGPDTAALADWWKDIEVWRSKDCLKFDRASEIIKPQY
                     VVEKAWELTDGEAFVCSDVGQHQMWAAQFYRFNKPRRWINSG"
BASE COUNT          642 a          935 c          941 g          657 t
ORIGIN      
        1 gagcttttga taagcatccc aagcgcgcac ccgtttttca gcgggtacgg acttcgaaac
       61 ctgataattt tcgcgcgcaa ccttgcgctg gtccggcgtc atgcggaccc attcggccat
      121 tcgctcatgc aggtgttttt gcgcatcggg cgtcatcttc ttgtaacgcg atgctatctt
      181 gatccaattt cgcttacgtt cttcactgaa ctgatcccac tgggaggcga acggcgcgag
      241 cgcgacccgt tgcgcgtcgg tgagccgagc ccatgccata ggacttgtgg gggaggcgag
      301 cgaagaaagc ggcgacagca cttctcccgc gctcgccccg accggggcgg cagcaacggg
      361 caccgccgag gcggacgagt agaaacgcgg ataggtagca gcaaacgcga caagtcccgc
      421 aattgcgcat ccaaagacaa tcgcgaggcc gcgcttgtaa ctcacccgat gactcctgca
      481 gtcttaatga ttgcgcgtca ggtacgcgtt gaaaccgtga tcgagatagg cgtcgagcgg
      541 gagattgtcg ctgagcatgg cggcgtcgat atcggcgagt tccgcggtgc gctgctggtc
      601 ctcaaaataa gcgatgccag ccaatccgat cacgagtgcg agcagcggcc acgccagcgc
      661 gaggcgcgaa aaacggccgc gtttacccgc atggccagac ccggccgggc cgagcgaacc
      721 cggacctgcc attccggccc cggcgagcgc aggcgcgaaa accggcgccg cgacagcgac
      781 tttttccggt ttcttgcgtg cgatcgccgt ccggcgagcc gccgccagct tgtcgagcga
      841 agcggcgggt agcgaattga cgttttcatc gagcgcgcgg cgtaccttca gcgcgaactc
      901 ggtttccttg tgatcgagag cgttgctcat agcgtgattc ctttcgcctt cagcgcgtgt
      961 gccagcgcgt gcgtggcccg cgagcaatgt gtttttacgc tgccttcaga gcagcccatt
     1021 gcagcggcgg tttcggcgac atccatatcc tcccagtaac gcatgagaaa cgcttcccgt
     1081 tgacgtgctg gtagtttttg gatctccgcg tcgatcaggt taagcacctg ttcacgctcg
     1141 agccggctct cgctgctttc cgcaccgacc gtcccatcct gcgattcgaa ggtttccagg
     1201 gggtcgaatt cgtcgtcgtc ggcgttgccg aacgaggaga acaggcttac ccacgtattg
     1261 cggacctttt ggcgccggaa atagtcgtgc gttgcattct gcaggatacg ctgaaacaaa
     1321 aggggcaatt cgggcggagg ccggtcgccg tatttttcgg cgagcttgat catcgcatcc
     1381 tgaacgatgt cgagcgccgc atcgtcgtcg cgtacggtgt acaccgtctg cttaaacgcg
     1441 cgtctttcga cgcccgccag aaaatcggcg agttccttgt ctgatgccat ccgtgaggcc
     1501 cggcgcaacg agcgtgcgtc gataagggtt ggtgagaggt gaaagcctgc ggatgctagc
     1561 aaacttttga gtgaacagcg aggaaatgcg ccgctgttac agcctgaaac acagagcttt
     1621 ctttatcatt tcggataaat ccgagccttt aaggcctgat tctggcgacc ttcacacggt
     1681 attgtgcagt ttttccttga cgagctttgt tggctcgggc tattgtttcc gactcgcatc
     1741 ataaagtgaa ctgtctcttt gaggcgagcc caagaagccc gcttcccatt tagacgcgcc
     1801 gcttgaaccc gagccataag cccggcagag agcacccaat caattttttg ccgaaaattc
     1861 gaaaggtgaa tgtatgaata tgcccagcgc ggaattctcc acgtcggata cgactccccc
     1921 cctcgaagct gaatccattg gcggcaccgt gctcatgcgc gcgctcgctg acgagaaagt
     1981 cgagttcatt tggggctatc ccggcggctc ggtactctat atctacgacg agttgtacaa
     2041 gcaggacgag atccagcaca tcctcgtgcg ccacgaacag gccgcggttc atgccgccga
     2101 cgcctacgcg cgctccacgg gcaatgttgg tgtagccctc gtgacctccg gccccggcgt
     2161 caccaatgcg gtgaccggta ttgccaccgc ctacatggac tccattccga tcgtcattat
     2221 cagcggccag gttcctaccg ctgcaatcgg ccaggatgcg ttccaggagt gcgacacggt
     2281 tggcattacg cgtccctgcg tcaaacacaa cttcctcgtc aaagacgtgc gcgacctcgc
     2341 cgcgaccgtc aagaaagcgt tttatatcgc ccgcactgga cgtcccggcc cggtgctgat
     2401 cgacattccg aaagacgtgt cgaagacgcc gtgcaagtac gaaccgatca agtccgtcgc
     2461 gctgcgttca tacaatccgg tgaccaaagg ccattcgggc cagatccgca aggccgtgca
     2521 gttgttgctc tcggcgaagc gtccgtacat ttatacgggc ggcggcatca tcctggcgaa
     2581 tgcggcgcgt gaactgaacc agttcgccga cctgctcggt tatccggtga cgaatacgct
     2641 gatgggcctg ggcggctatc gcgcggacaa caagaaattc ctcggcatgc tcggcatgca
     2701 cggcacgtac gaagccaaca tggccatgca gcattgcgac gtgctgattg cgatcggcgc
     2761 gcgtttcgat gaccgcgtga tcggtgatcc ggagcatttc gcgtcgcatg cgaagaagat
     2821 cattcacatc gacatcgatc cgtcgtccat ctccaagcgc gtgaaagtcg atatccccat
     2881 tgtcggcgac gtgaaggaag tgctgaagga gttgatcgaa cagttgcaga cagctgagca
     2941 tggtccggac acggcggcgc ttgccgactg gtggaaggac atcgaggtgt ggcgttcgaa
     3001 ggactgcctc aagttcgacc gtgcaagcga gatcatcaag ccgcagtacg tggtcgaaaa
     3061 ggcgtgggaa ctgacggacg gcgaagcgtt cgtctgctcg gacgtcggcc agcatcaaat
     3121 gtgggcggcg cagttctacc gcttcaacaa gccgcgtcga tggatcaatt cgggt
//
LOCUS       DATGBK010001909         3073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_254127, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001909 DATGBK010000000
VERSION     DATGBK010001909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254127"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            40..1065
                     /locus_tag="VKJ77_26870"
     CDS             40..1065
                     /locus_tag="VKJ77_26870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014191311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HMC48966.1"
                     /translation="MIYPWQTDDWTRLDQLRASWPHALLLHGRAGIGKLQFAQHLAQS
                     LLCETPTETREPCGKCVACLWFSQGNHPDYRAVLPEALAGELVNDDKADKADAEDGKK
                     TKVLSKEIKIDQVLGLMNFFSLGSHRGGLRVVLLYPAESINVFAANALLKTLEEPPAG
                     VVFILVTARIDRLLPTIISRCRQWPMTLPATEPAVAWLAQQGVERPAAVLAEAGGAPL
                     TALALASDENRALRDFALAQLAAGPACDAFACGESLQKLPVPMVLGWLQRWLYDLLAQ
                     KTAGRPRYFPGASKALERCAAQIDTERFARFQKTVTRQRAVENHPLNARLVFEELFLG
                     YRDVFAA"
     gene            1098..1595
                     /locus_tag="VKJ77_26875"
     CDS             1098..1595
                     /locus_tag="VKJ77_26875"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015002604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HMC48967.1"
                     /translation="MNPNFRDATLDDLPGIVAIYNSTVPSRLVTADLEPVTVESRLAW
                     FHAHGPKARPLWVVEENGAVIAWLSFSDFYGRPAYLRTAEVSIYLAESARGKGLGKQL
                     LQVALERAPGLGIDTLLGFIFGHNEASLRLFQRFEFQTWGALPRVAVLDGVERDLVIL
                     GRRLG"
     gene            1654..2451
                     /locus_tag="VKJ77_26880"
     CDS             1654..2451
                     /locus_tag="VKJ77_26880"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HMC48968.1"
                     /translation="MFVDSHCHINFEGLADRLPEVLDKMRELKVTHALCVSVDLETLP
                     SVLKIAEENEHIYASVGVHPDHEDAREPSVADLVELARHPKVVAIGETGLDYYRLEGR
                     SIADMEWQRERFRTHIRAAHATEKPLIIHTRSSWEDTLRIMAEERASVPGGVMHCFTE
                     PWHVAEAALAQDFYISLSGIVTFKSAKDVHDVAGRVPLERLLIETDSPYLAPVPYRGK
                     SNEPAYVSYVGRFIAQLREMPDEALAAATTRNFFTLFKIPQAQPVEQ"
     gene            2647..>3073
                     /locus_tag="VKJ77_26885"
     CDS             2647..>3073
                     /locus_tag="VKJ77_26885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008349681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HMC48969.1"
                     /translation="MTGLVLTAAAIAQPAFATPADSMIKAVKFDDISAVKKLLAQGVD
                     PNLVDDTGTPLLVIAAREKSDKVGALLADNPNIDLEKLDPAGENAMMLAALNDDLNFV
                     NILIAKDAEVNKKGWTPLHYAATNGHDDVVKVLLDHSAYI"
BASE COUNT          603 a          916 c          940 g          614 t
ORIGIN      
        1 caatattgcg tcgcaaacat ctgatccaaa agacttttca tgatctatcc gtggcaaacc
       61 gatgactgga cccgtcttga ccaactgcgt gcaagctggc cgcacgcgtt gctcctgcac
      121 ggtcgcgcgg gtatcggtaa attgcagttc gcgcagcatc ttgctcaaag cctgctctgc
      181 gaaaccccga ccgaaacgcg cgaaccgtgc ggaaagtgcg ttgcctgcct gtggtttagc
      241 cagggcaacc atcccgacta tcgcgcggtg ctgccggagg cgcttgccgg tgaattggtc
      301 aacgacgaca aggctgataa ggcagatgcc gaggacggca agaaaacgaa ggtgctaagc
      361 aaggagatca agatcgatca ggtgctcggg ttgatgaatt ttttcagcct tggttcgcac
      421 cggggcggtt tgcgcgtcgt gttgctgtac ccggctgaat cgatcaacgt gttcgccgcg
      481 aacgcattgc tcaagacact ggaagaaccg cccgcgggcg tggtgttcat tctggtgacg
      541 gcacgcatag accgcttgct gccgacgatc atcagccgct gccgccaatg gccgatgacc
      601 ctcccggcca ccgagcccgc cgttgcatgg ctggcgcagc agggcgtgga gcgtcccgca
      661 gccgtgctgg ccgaagccgg tggcgcgccg ttgaccgcgc tggcgctcgc ctccgatgaa
      721 aatcgcgcgc tgcgtgattt cgcgttggcg caactggccg ccggccccgc ctgcgacgct
      781 ttcgcgtgcg gagagagcct gcagaagctg ccggtgccca tggtgctcgg ctggttgcag
      841 cgctggcttt acgacctgct cgcgcagaaa acggcggggc gtccgcgcta cttccccggg
      901 gcatcgaagg cgctcgagcg ctgcgccgcg cagatcgata ccgagcgttt tgcccgcttt
      961 caaaagacgg tgacacggca acgcgcggtg gaaaatcatc cgctgaacgc gcggctcgtg
     1021 ttcgaagaac tgttcctggg ctatcgcgac gtgttcgccg cctgactacc gactcacttt
     1081 ttgcatccga acgcactatg aaccccaatt tccgcgacgc cacgctcgac gatcttcccg
     1141 gcatcgtggc catctacaat tccaccgtgc cctcgcgcct cgtcaccgct gatctcgaac
     1201 cagtgacagt cgaaagccgg ctcgcgtggt ttcatgccca tggtccgaag gcccgcccgt
     1261 tatgggtggt tgaagagaat ggcgcggtca tcgcgtggct gagtttctcc gatttttacg
     1321 gccgtccggc ctatctgcga acggctgaag tcagcatcta tctcgccgaa agcgcgcgtg
     1381 ggaaagggct ggggaagcag ttgctgcaag tggcgctcga gcgcgctccg gggttgggta
     1441 tcgacacgct gttgggtttc atcttcggcc acaacgaagc gagcctgcgc ctgttccagc
     1501 gctttgaatt ccagacgtgg ggggcgctgc cgcgcgtcgc ggtgctggac ggcgttgaac
     1561 gagacctcgt gattctcggc cggcgcctcg gctgaccggt caggtcgatc catcctctga
     1621 gagccaaccc aatcccgctt taacggaatc cccatgttcg tcgattcgca ttgccacatc
     1681 aatttcgaag gcctggccga ccgtctgcca gaagtgctcg acaaaatgcg cgagctgaaa
     1741 gtgacgcatg cgctgtgcgt ttcggttgat ctggaaacgc tgccttcggt gttgaagatc
     1801 gccgaagaaa acgagcatat ttatgcatcg gtcggcgtgc atccggatca cgaggacgcg
     1861 cgtgaaccga gcgtggcgga tctcgtggaa ctggctcggc atccgaaagt tgtggctatc
     1921 ggcgagacgg ggctggatta ttaccgtctg gaaggtcgca gcatcgccga tatggaatgg
     1981 cagcgcgaac gcttccgcac gcatattcgg gcggcgcacg cgacggagaa accgctgatc
     2041 atccacacgc gttcgtcatg ggaagacacg ctgcggatca tggccgagga gcgcgcaagc
     2101 gtgccgggcg gcgtgatgca ttgcttcacg gagccgtggc atgtcgccga ggcggcgctc
     2161 gcccaggatt tttacatttc gctgtcgggc attgtcacgt tcaagagcgc aaaggacgtg
     2221 catgacgtcg cggggcgcgt gccgctcgag cgtttgctga ttgaaacgga ctcgccgtat
     2281 ctggcgccgg tgccgtatcg cgggaaatcg aatgaacctg cgtacgtaag ttatgtcgga
     2341 cgcttcatcg cgcaattgcg cgagatgccg gatgaagcgc tggcggcagc caccacgcgt
     2401 aattttttca cgctgttcaa gatcccgcag gcgcagccag ttgagcaatg aagctcggtg
     2461 cggccttttc actgcagcgc gtcccatcga tcgcctgaaa gatccggtat ttcgtaatta
     2521 gaacgttaag taatccccaa ggaacacatg cttacatctt cgacggtttc ctcttcgccc
     2581 ctttctggaa cccattcggg agcctttcgg caagcccatt caacacgtaa aacgtggcga
     2641 accctcatga cgggcctggt cctgacggcg gccgccatcg cgcaacccgc gttcgcgacg
     2701 cctgccgact ccatgatcaa ggcagtaaag ttcgacgaca tatctgccgt taaaaagctg
     2761 ttggcacagg gcgtagatcc gaatctggtc gatgacaccg gtacgccgtt gctcgtgatc
     2821 gcggcgaggg aaaagtctga caaggtaggc gcgctgctcg ccgataaccc gaatatcgac
     2881 cttgaaaagc tcgatcccgc cggtgaaaac gcgatgatgc tcgccgccct caacgacgac
     2941 ctcaacttcg tgaacatcct gatcgcgaag gatgcggaag tgaacaagaa gggctggacg
     3001 ccgctgcact acgctgcgac caacgggcat gacgacgtgg tgaaggtgct gctcgaccat
     3061 tcggcttaca tcg
//
LOCUS       DATGBK010001910         2873 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_184786, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001910 DATGBK010000000
VERSION     DATGBK010001910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2873
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184786"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..499
                     /locus_tag="VKJ77_26890"
     CDS             <1..499
                     /locus_tag="VKJ77_26890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011808520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HMC48970.1"
                     /translation="LPVVAAALVGLILNEGAYLSEIIRGGIASVPRGQTNAAKALGLN
                     AFQTMRQIVFPQAMRLIVPSLGNSVNSLLKTTSITSVISMEELLRRTQELIQERFMVL
                     ELFVVAALYYLLITTVWDFFQRRIEAHYGRGYVAHGAASAGWRERWLNRGARRRAGPP
                     AAQRH"
     gene            516..1970
                     /gene="hydA"
                     /locus_tag="VKJ77_26895"
     CDS             516..1970
                     /gene="hydA"
                     /locus_tag="VKJ77_26895"
                     /EC_number="3.5.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011481514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004157 - dihydropyrimidinase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HMC48971.1"
                     /translation="MNPSNREQRFDTVVRHANIATAADLFTADIGIRDGVVVALGNDL
                     ADGRETIDARGRFVTPGGVDGHVHLDQPTSDGSKMADDFETGTRSAACGGTTTVIPFA
                     LQFKGRSVRAAVEDYHRRAADKAAIDYAFHLIVSDPSHAVVSEELPKLIAEGYTSIKV
                     YMTYDDMKLDDRQIIDVLACARIHGAMTMIHAENSDCIGWLTERLLAAGLSAPKYHGA
                     SRPMLVEREATHRAIALSELAEVPILIVHVSGREAIEQIHWARGRGLPVFAETCPQYL
                     FLSEEDLALDGFAGAKCICSPPPRDKANQQAVWTGLQNGMFTIVSSDHAPFNYDGPDG
                     KMLHGPGGSFHQVPNGIPGIETRMPLLFSEGVLGGRIDINRFVQLTSTNAAKLYGLYP
                     RKGTIAIGSDADLVIWDTGVPRTIRNVDLHHAADYTPYEGREVRAWPSVTMSRGVTVW
                     CEGEFRGRAGHGQFLRCERPGVVTSQFKIGPATL"
     gene            2006..2770
                     /locus_tag="VKJ77_26900"
     CDS             2006..2770
                     /locus_tag="VKJ77_26900"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HMC48972.1"
                     /translation="MTKVSNNVTETRAKKTGGSRKPQTAAVASQYEAPAADAAEDRLT
                     DTRVVSLGERAYRRLREMILDRELEAGALLNEHRVSEQLDMSRTPVREALLRLTGEGL
                     LVRADARSFSVRTVSAREFFESMRVRETLEAQAIDLGIQRLSVASIEALEVQVHALEV
                     GQHTEVEHREFDDLLHRTIAEASGNAVLVQMIVMMRLNARLFRVTSHLHRQQENHVEH
                     LAILTALKKRDVVEARNAMINHIRGLQDDVIKAITG"
BASE COUNT          551 a          876 c          919 g          527 t
ORIGIN      
        1 cttgccggtg gtggcggcag cgctcgtcgg actgatcctg aacgagggcg cctatctgtc
       61 ggagatcatc cgcggcggca tcgcctcggt accgcgcggc cagaccaacg cggcgaaggc
      121 gctcggcctc aatgcgttcc agacgatgcg ccagatcgtg ttcccgcagg ccatgcgtct
      181 gattgttcca tcgcttggca acagcgtgaa cagcttgctc aagacgacct cgatcacgtc
      241 cgtgatctcg atggaagaac tgttgcgacg cactcaggaa ttgattcagg agcgcttcat
      301 ggtgctcgaa ctgtttgttg tcgccgcgct ttattacctg ttgatcacca ccgtgtggga
      361 ctttttccag cgcaggatcg aagcgcacta cggacgtggc tacgtagcgc acggcgcggc
      421 ttccgcaggt tggcgggagc ggtggctgaa tcggggcgcg cggcggcgcg ctggtccacc
      481 ggccgcacaa cgtcattgaa ccagcgagac accccatgaa cccaagcaat cgcgagcagc
      541 gtttcgatac cgtggtccgt catgcgaaca tcgcgaccgc agcggatctc tttaccgcgg
      601 acattggaat tcgcgacggc gtagtcgttg ccctcggcaa cgatctggct gacggccgcg
      661 agaccatcga cgcgcgtggg cgcttcgtga cacccggtgg cgtggatggg catgtccacc
      721 ttgaccagcc gacatctgac ggctcgaaga tggcggacga ttttgaaacc ggcactcgtt
      781 cggcagcctg cggcggcacc acgaccgtga tcccgttcgc gctgcagttc aagggccgta
      841 gtgtgcgagc ggcggtcgag gactaccaca ggcgtgcggc agacaaggcc gccatcgact
      901 atgcgttcca cctgatcgtg tccgatccct cgcacgcagt ggtgagcgaa gagttgccga
      961 agctgatcgc cgagggctac acatcgatca aggtctacat gacctacgac gacatgaaac
     1021 tcgacgatcg ccagatcatt gacgtgctgg cgtgcgcccg catccacggc gccatgacga
     1081 tgattcacgc ggagaacagc gattgcatcg gctggctgac cgagcgtctg cttgccgccg
     1141 gcctgagcgc gccgaaatac cacggcgcgt cgcggccgat gctcgtcgag cgcgaggcga
     1201 cacatcgggc gatcgcgttg tcagaactcg ctgaagtgcc gatcctgatc gtgcacgtgt
     1261 ccggtcgaga ggcaatcgag cagattcact gggcgcgcgg gcgcggactg ccggtcttcg
     1321 ccgaaacgtg tccgcagtat ctgttcctga gcgaagagga tctggctctc gacggtttcg
     1381 cgggtgcgaa gtgcatctgc agtccgcccc cacgcgacaa ggccaaccag caggccgtgt
     1441 ggaccgggct gcagaacggg atgttcacga tcgtgtcatc ggatcacgcg ccgtttaatt
     1501 acgacggccc ggacggcaag atgctgcatg gccccggcgg cagttttcat caggtgccca
     1561 acggcattcc cggcatcgag acgcgcatgc cgctgctgtt ctctgagggc gtgctgggcg
     1621 gccggatcga catcaatcgc ttcgtgcaac tcacttcgac gaacgcggcc aagctttacg
     1681 gcctctatcc gcgcaaaggc acaatcgcga tcggcagcga tgccgacctc gtgatctggg
     1741 acacgggcgt ccctcgcacg atccgtaacg tcgacctgca tcatgccgcc gactacacgc
     1801 cctatgaggg ccgcgaagtt cgcgcctggc cctcggtaac gatgagccgg ggcgtaacgg
     1861 tctggtgcga gggggagttt cgcggccgtg ccgggcacgg ccagttcctg cggtgcgagc
     1921 ggcccggcgt tgtaacatcg cagttcaaaa tcgggcccgc cacgctctga cacggcccga
     1981 gtgaacatgg aacccctgcc tgaccatgac caaggtatcg aataacgtga ccgaaacccg
     2041 tgccaagaaa accggtggaa gccggaagcc acaaaccgct gccgtggcga gccagtacga
     2101 ggcgcccgcc gcggatgcgg ccgaggacag gttgacggac acgcgtgtcg tgagcctcgg
     2161 cgaacgcgct taccggcgcc tgcgggaaat gatcctcgat cgcgagcttg aggcaggtgc
     2221 gctgcttaac gaacaccgtg tttccgagca actcgacatg tcgcgcacgc cggtgcgcga
     2281 ggcgctgctc cgcttgaccg gcgagggctt gctggtgcgc gccgacgccc gcagcttctc
     2341 cgttagaaca gtgtcggcgc gcgagttttt cgaaagcatg cgggtacgcg agacgctgga
     2401 agcgcaggcc atcgaccttg gtatccagcg gctatcagtc gcctcgatcg aggcgctcga
     2461 ggtgcaggtt catgcgctcg aagtcggcca gcatacggag gtcgaacatc gagaattcga
     2521 tgacttgctg caccggacca tcgcggaggc ttcgggcaac gcggtgcttg tccagatgat
     2581 cgtcatgatg cggctcaacg cgcgcctgtt tcgcgtgacg agccatttgc accggcagca
     2641 ggaaaaccat gtcgagcatc tcgcgatcct gacggcgctt aagaagcgcg acgtggttga
     2701 ggcgcgcaac gcgatgatca accacattcg cggactgcag gacgacgtca tcaaggcgat
     2761 taccggctag acaagcaggc tcttctgggc gggagagccg tgggtatcat ttcataaaat
     2821 tagtatgcct atttaaatgg cagggagagc ctttgttttt ttatctcttg aac
//
LOCUS       DATGBK010001911         4352 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_161668, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001911 DATGBK010000000
VERSION     DATGBK010001911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 4352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4352
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161668"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..543)
                     /locus_tag="VKJ77_26905"
     CDS             complement(<1..543)
                     /locus_tag="VKJ77_26905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007583550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine deaminase"
                     /protein_id="HMC48973.1"
                     /translation="MDASLLITHVRLPDGTLVDIAIDDGRIEEIGSNLQRGADVMREN
                     GQGALVLPGFVEGHTHLDKTNWGMPWYRNEVGPRLTDRIENERSWRASTGHDAGAQSL
                     ALARAFLAAGTTRLRTHVDIDTDAGLRHLHGVLAMRETLADVMEIQVVAFPQSGMLRR
                     PGTDALLSDALKAGADVLGAL"
     gene            complement(571..1062)
                     /locus_tag="VKJ77_26910"
     CDS             complement(571..1062)
                     /locus_tag="VKJ77_26910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012433111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HMC48974.1"
                     /translation="MTSTPVPADPDSAAMRLEALGLVLPKVPLPRGAFKPFSRSGSLI
                     FLAGQICEWEGEVRYAGPVGTEHDLEAGQRAAQICALNLLAALHLALDGDLDRVVSCH
                     RMGGFVYCTPGYPEVPKVINGASDLMFAVFGERGRHARTAVGVATLPAGASVEVDAIF
                     EVR"
     gene            1404..2897
                     /locus_tag="VKJ77_26915"
     CDS             1404..2897
                     /locus_tag="VKJ77_26915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012427224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MDR family MFS transporter"
                     /protein_id="HMC48975.1"
                     /translation="MSRSPQSSRPLVIAAVMASMAMVAIEATIVSTAMPQIVSQLGDL
                     HLYSWVFSSFLLTQTAMTVIFGKLADLYGRKPIVLAGIAIFLIGSILAGFAWSMPAMI
                     VFRLIQGVGAGAIQPVTLTIVADLYPARERGKVQGYLASVWAISAVVGPMVGGLIIRD
                     FSWSWIFWMNVPIGLASAAGFIAFLKESERHARPSIDFAGAALFMVSIAALMMSLTYA
                     GNDDVTKALIAGGFFIVCLLFFLMQEKRATEPMISFALWSRRPIAACNGSTVLSGMIL
                     MGATTFLPMYVQGVLHRSPVIAGLALTMMMVGWPVGATLAAKSFHRIGLRRILIGGSA
                     FVPVGAVFLIALSPESSPLIAAFGSLIMGFGMGTSSVSSLVLIQEIVDIAQRGSATAS
                     NLFSRNLGSTIGATLFGAVLNFGLSHSNGAAAVTSDQLKALLQNRVTNLGSSDAIRQV
                     LHQSLHLTFLSIFVIAIFVVGFLLFVPTITLGHEKKMPLEALSPIED"
     gene            3176..>4352
                     /locus_tag="VKJ77_26920"
     CDS             3176..>4352
                     /locus_tag="VKJ77_26920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006416878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HMC48976.1"
                     /translation="MRSWLVRLHRWFGLGIALFLFMSGLTGAIIAWDHELDAALNPEF
                     FVAKSSASALPTLPAPSPLELANRIEAADPRVQVTYLPLVAEPGHTLQMGVTPRTNPA
                     TGLPYELSFNQLAVDPATGEIQARREWGAISVSQLELIPFIYKLHYSLHLPIRGDIDL
                     GMWLMGMVGIVWLFDSLIAITLSFPSIKSWRKSLAFRVKRGGYALTFDLHRSGGVWVW
                     GLLLMIALTSVSMNLANPVMRPIVSVFSSLGSTPFSDPGLALPASPTASPLSREQVVE
                     MARVEARRDGINAAPGGLLYSPLVNAYGVGYFEAGNDHGDAGLGNAWLFWNAQTGKSI
                     GAHIPGRGSAGDIFMQAQFPLHSGRIIGLTGRIVVSVLGVVVAMLSATGFLIWMKKAR
                     "
BASE COUNT          772 a         1330 c         1286 g          964 t
ORIGIN      
        1 aagcgcgccg agcacgtcgg ctccggcctt tagcgcgtcg ctcagcagcg cgtcggtccc
       61 tggacgacgc agcatgcctg actgcggaaa cgccacgacc tgtatctcca tgacatctgc
      121 cagcgtttcg cgcatcgcca gcacaccgtg caaatgcctg agcccggcgt ccgtgtctat
      181 atccacatgc gttctaagcc gcgtcgttcc cgctgcaaga aaagcccgcg cgagcgctag
      241 cgactgcgca cccgcgtcgt gtcccgtgct cgcgcgccac gatcgttcgt tttcgattct
      301 gtcggtaagc ctcggaccca cttcgttgcg ataccacggc atgccccagt tggttttgtc
      361 gagatgcgta tggccttcga caaacccagg cagaactagc gcaccctgcc cgttttcccg
      421 cataacgtcg gccccgcgtt gcaggttcga gccgatttct tctatccgcc catcgtcgat
      481 agcaatatcc accaaggtgc cgtccggcag gcggacatgg gtgatcaaca agctagcgtc
      541 cactggaact cctggaaata gaaattgcaa tcagcgtact tcaaagattg cgtccacctc
      601 caccgaagcc cccgctggaa gcgtggcaac gccgaccgcg gtccgtgcgt gccggcctcg
      661 ttcgccgaac accgcgaaca tgagatccga ggctccgttg atgactttcg gcacttcagg
      721 ataacccggc gtgcaataca cgaatccgcc catccgatga caactgacca cgcggtcaag
      781 gtcaccgtcg agtgcgaggt gaagtgctgc gagcaggtta agtgcgcaaa tttgcgccgc
      841 ccgttgcccc gcttcaagat cgtgctccgt gccgacagga cccgcgtatc gaacctcacc
      901 ttcccattca caaatctgtc ccgcgaggaa gatcagcgag cccgagcgcg agaaaggctt
      961 gaacgcgccg cgcggtagag gcactttcgg caggacgagt ccaagcgcct caagacgcat
     1021 ggcggctgaa tccgggtcgg ctggaacggg cgtggatgtc attgacggtc ctcgatttaa
     1081 aaagatattg cctcatgcga acgaacggat gaaatgaaag cgttcgcgtc gaatatccaa
     1141 gtgtgtcaca acatcccaaa cgaacaaaag cgcatgactg acgaggcttt acacagtgat
     1201 tcaacaacgc cgcgtcacta taacggggac gcttcagaga ccgcccgcac agccgatcaa
     1261 gcagccttca ggcgcgactc gggttcagcg aacatttcca tcaaggtgca tactctttaa
     1321 cggtcgcgcc gctgcggccg tatcacgcgt cgcagcgcca agaccctgcg actttgtccg
     1381 cgcccctcat tactccaatc tccatgtccc gcagcccgca atcgtcgcgt cctcttgtca
     1441 ttgcagcggt catggcttca atggcaatgg tcgccatcga agccaccatc gtttctaccg
     1501 ccatgccgca gatcgtctcg cagcttggcg acctgcatct ctacagctgg gtcttctcgt
     1561 ccttcctgct gacacagacc gccatgacgg tcatcttcgg caagctcgcg gacctgtatg
     1621 gccgtaagcc catcgttctt gccggtatcg cgatctttct gatcggctcg atactcgccg
     1681 gttttgcctg gtcgatgccg gccatgattg tgttccggct gatccaggga gtcggcgcgg
     1741 gtgcgatcca gccggtcacg ctgacgattg tcgccgacct ctacccagcg cgcgaacgcg
     1801 gcaaggtgca aggttatctg gcgagtgtct gggccatatc ggcggtggtc gggccaatgg
     1861 taggcgggct catcatccgc gacttttcgt ggtcctggat cttctggatg aacgtgccga
     1921 tcggcctcgc gtcggcggct ggttttatcg cgttcctgaa ggaatccgag cggcacgcgc
     1981 gaccgtccat cgactttgcg ggagcggcgc tattcatggt gtccatcgct gcgctgatga
     2041 tgtcgctgac gtatgcaggc aatgatgacg tcacgaaggc gttgatcgcg ggcggcttct
     2101 ttatcgtgtg cctgctgttc ttcctgatgc aggagaaacg ggcaacggaa cccatgatct
     2161 cgttcgcact atggagccgc cggccgatcg ccgcgtgtaa tggatcgaca gtcttgtccg
     2221 gcatgatttt gatgggcgca accaccttcc tgccgatgta cgtgcaaggc gtcctgcatc
     2281 gctcgccggt gatcgccggt cttgcattga ccatgatgat ggtcggatgg cccgtcggcg
     2341 cgacgctggc cgcgaagtcg tttcatcgaa tcgggctgcg gcgcatcctg attggcggca
     2401 gtgcgtttgt cccggtgggt gcagtgttcc tgatcgcgtt gtcaccggaa agctcaccgc
     2461 tgattgcagc gttcggttcg ctcatcatgg gcttcggcat gggaacgtcg agcgtcagtt
     2521 cgctcgtgct gatccaggag atagtagata ttgcgcagcg cggtagcgcg actgcatcga
     2581 atctgttctc gcgtaatctc ggcagcacga tcggcgcgac cttgttcggc gccgtgctca
     2641 acttcggtct tagtcattcg aatggcgcgg cagcggttac atcggatcag ttgaaggccc
     2701 tgcttcagaa tcgggtgacg aacctcggca gcagcgatgc aatccgtcag gtgctgcatc
     2761 agtcgcttca cctgacgttc ctgtcgattt tcgtgatcgc gattttcgtc gtcgggtttc
     2821 tcctcttcgt ccctacgatc accttggggc acgagaagaa gatgccgctc gaagcgttgt
     2881 cgccgatcga agactgaacc cgccgcgccg ggctgattca ggggtcagcc cggttctggc
     2941 gagcgcctgc gccctccttc gtgcagcgcg caggctttgc caccgctcgc cacgctcgat
     3001 caaaaggccc cttcgcggcc gctaccccca tgcgccttcc tttcagatta cttgcaacgg
     3061 cctcgtctag cccttaatat gcgaatgatt cctatttatg gcagatgatt tcgatgaaac
     3121 aggcagcagc aatttttcgc gtatcccgta gcgcgcccat caccatgcgt cgagcatgag
     3181 atcgtggctg gtgcggctgc accgttggtt cggccttggg attgcgctat tcctgttcat
     3241 gtcgggattg acgggcgcga tcatcgcgtg ggatcacgaa ctggacgccg cgttgaaccc
     3301 ggagttcttc gtggcgaagt cgtctgcgtc tgcgttgcct acgctgcccg caccgtctcc
     3361 gctggaactg gcgaaccgga ttgaagccgc cgatccgcgc gtgcaggtca cctatctgcc
     3421 gctggtggcc gagccgggcc atacgctgca gatgggcgta acgcctcgca ccaatccggc
     3481 aacgggcctg ccctatgaac tcagcttcaa ccagcttgct gtcgatcccg ccaccggaga
     3541 gatccaggcg cgtcgcgaat ggggcgctat atcggtctcg cagcttgagt tgatcccgtt
     3601 catctacaag ctccactact cgctgcatct gccgatacgc ggcgatattg acctcggcat
     3661 gtggctgatg ggcatggtag gtatcgtgtg gttgttcgac agtctgattg cgatcacgct
     3721 ctcgtttccg agtatcaaaa gctggcgcaa gtcgcttgcg tttcgcgtga agcgaggcgg
     3781 ctatgcgctt accttcgact tgcatcgctc gggtggcgtg tgggtgtggg gtctactgct
     3841 gatgatcgcg cttacctcgg tctccatgaa cctggcgaac ccggtcatgc gcccgattgt
     3901 gtcggtgttc tcgtcactgg gctcaacgcc tttctcggac cccgggctgg cgttgccggc
     3961 tagtccgacc gcttcgccgt tgagccgtga acaggtcgtt gaaatggcgc gggtcgaggc
     4021 gcgccgtgac ggtattaatg cggcgccggg cgggctgctt tattcgcctt tggtgaacgc
     4081 ttatggcgta ggttacttcg aggccggtaa cgaccacggc gatgcgggtc tgggcaacgc
     4141 gtggctcttc tggaacgcgc agaccggcaa gtccatcggt gcacacattc caggccgggg
     4201 atcggccggc gatatcttca tgcaagctca gtttccgctg cattcgggcc gcatcattgg
     4261 tttgactgga aggatcgtgg tcagcgtcct gggtgtcgtg gtggccatgc tcagcgctac
     4321 cgggttcctg atctggatga agaaagcgcg ag
//
LOCUS       DATGBK010001912         1838 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_184877, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001912 DATGBK010000000
VERSION     DATGBK010001912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184877"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..779
                     /locus_tag="VKJ77_26925"
     CDS             <1..779
                     /locus_tag="VKJ77_26925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006026029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HMC48977.1"
                     /translation="AGRWDYIFSAIKKFKNDADFCLADRAKITMTVPFMRAYALQLLK
                     TCHRRNAPAIGGMSALIPIKGDPQANDKAMGGVRSDKARDAGDGYDGGWVAHPGLVLI
                     AMEEFVKVLGDKPNQIAKQREDVQVTATDLLDFRPEDPITEGGVRGNINVGIHYLGSW
                     LAGNGCVPIHNLMEDAATAEISRSQVWQWIRSPKGKLDDGRKVTAEMVRAFTQEELVK
                     VKSVVAGDTAPYDRAATIFEAMSTSDTFAEFLTLPLYEEI"
     gene            complement(855..1280)
                     /locus_tag="VKJ77_26930"
     CDS             complement(855..1280)
                     /locus_tag="VKJ77_26930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011516144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase family protein"
                     /protein_id="HMC48978.1"
                     /translation="MQHVFVYGTLRAGESNDIRLAAERNGIVAPMLIGSGHINGRLYD
                     FDAYPGLVLDSAAGPVHGDIYRIDETLVPVLDEIEEIVPGVIGLYRSERLQVTVHVDG
                     CAQDIDCLVYPVGEEAVEGLPRIDNGDWVVYRRSRRARQ"
     gene            1443..>1838
                     /locus_tag="VKJ77_26935"
     CDS             1443..>1838
                     /locus_tag="VKJ77_26935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016345595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family ligand binding domain-containing
                     protein"
                     /protein_id="HMC48979.1"
                     /translation="MFTSTDQPLQPEEVEHLDIPADSSPTLAHPIRVRSRPVSAGVRI
                     ARHTHAWAQVACTTRGVLRIAAEGSTWMVPPSRAIWVPPNVTHEVVIVEDAFLRTLYI
                     DASVVPPGLDACRVVEVSPLLREVAVALDD"
BASE COUNT          383 a          536 c          557 g          362 t
ORIGIN      
        1 acgccggccg ctgggactac atcttttccg cgatcaagaa gttcaagaac gacgccgatt
       61 tctgccttgc cgatcgcgcg aagatcacga tgaccgtgcc gttcatgcgc gcctatgctc
      121 tgcaattgtt gaagacgtgc catcggcgta atgcgccggc gatcggcggc atgagtgcgt
      181 tgattccgat caagggcgac ccgcaagcca acgataaagc catgggcggc gtacgttcgg
      241 acaaggcgcg cgatgcgggt gacggttacg acggcggatg ggtcgcgcat cctggcctcg
      301 tgctgatcgc gatggaagag tttgtgaagg tgctcggcga caagccgaac cagatcgcga
      361 agcaacgcga ggacgtgcag gtcacagcaa ccgatctgct cgatttccgt cctgaagatc
      421 ccatcaccga aggcggcgtg cgcggcaata tcaacgtggg catccactat cttggatcgt
      481 ggctggcggg caatggctgc gtgccaatcc acaacctgat ggaagatgcg gcgaccgcgg
      541 aaatttcgcg ctcgcaagtg tggcagtgga ttcgctcgcc gaaaggcaag cttgacgatg
      601 gccgcaaagt gaccgccgaa atggtccgcg ccttcacgca ggaagagttg gtgaaggtga
      661 agtcggtcgt ggccggcgac accgcgccgt acgaccgggc ggcgacgatt ttcgaagcga
      721 tgtcgacatc agatacattc gcggagtttt tgacgttacc gctgtacgaa gagatttaag
      781 agttaacgcc ggtcttctgt gaaataacgc cgctctggaa attcagggcg gcttttttat
      841 gggcgttgag ccagtcactg ccttgctcgt cttgatcttc gatacacaac ccaatcaccg
      901 ttatcgatac gcggcagacc ctccaccgcc tcctcgccga cgggataaac caggcaatcg
      961 atatcctgcg cgcacccgtc tacgtgaacc gtcacctgca accgctcact acggtacaag
     1021 ccgataacac ccggcacgat ctcttcgatt tcatcgagca caggcacgag tgtttcgtcg
     1081 attcgataga tatcgccatg caccggcccc gccgcggaat cgagcaccag tccgggataa
     1141 gcatcgaagt cgtacagccg gccattgata tgacccgagc cgatcagcat cggcgcgacg
     1201 atcccgttac gctctgctgc gaggcgaatg tcattgctct cgcccgctcg cagcgtgccg
     1261 tagacgaata cgtgttgcat gcgttccatc ccttccatga agatccagtg cgcattatgc
     1321 caagcgtata gaacagtcat taagtcatga tgccgcggcc agagaaatac atccggcgcc
     1381 cgacttcaaa gctaatctcg cccgatgcct ttaatatcac gaaggaggag cgcttaaaag
     1441 ccatgttcac gtcaactgat cagccgctgc agccggaaga agtcgagcat ctcgacattc
     1501 cggccgactc gtcgcctacg ctcgcgcatc ccattcgtgt gcgttcgcgg cctgtgtcgg
     1561 ccggcgtccg gattgcgcgg cacacgcacg cgtgggcgca ggtcgcgtgc acgacacgcg
     1621 gcgtgctgcg aatcgcagcg gaagggtcga cgtggatggt gccgccatcc cgggcgatct
     1681 gggtcccgcc gaacgtgaca catgaagtgg tgatcgtgga agacgcgttt ctgcggacgt
     1741 tgtatataga cgcgagcgta gtgccgccgg gactggatgc gtgccgcgtg gtggaggtgt
     1801 cgccgctgct gcgcgaggtg gctgttgcgc tggatgac
//
LOCUS       DATGBK010001913         1934 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92123, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001913 DATGBK010000000
VERSION     DATGBK010001913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92123"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1208
                     /locus_tag="VKJ77_26940"
     CDS             <1..1208
                     /locus_tag="VKJ77_26940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007838873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HMC48980.1"
                     /translation="AVVLCDVKLPGMPGTQWLNEIRTIDPDLPVILVTGHGDIAMAVK
                     AMRQGAYDFIEKPFPSEHLVAVVRRAAEKRYLTLQVQALRDRIENAHGIQAMMLGRSA
                     QMQHVRETVLTLAGTSADVVIYGETGTGKDLVARCLHDHSDRRHANYVPLNCGGLSEA
                     LAESELFGHEVGSFTGASRVRIGKFEHAHGGTLFLDEIESMPMAVQIKFLRALQERSI
                     ERIGSNKAIHVDCRVIAAAKDDLKVLSDQQKFRSDLYYRIGVAFIELPPLRERREDIP
                     LLFEHFTLLAASRHQRTAPLLNGSQLAELMAHAWPGNVRELRNVADRFVLGLFRDSLT
                     SATGGHDMLTGLPQQVEHFERTMITEELRRHHGDVLRTATTLGLPKQTLYDKLRKLRI
                     STDEFRKDS"
     gene            complement(1216..1632)
                     /locus_tag="VKJ77_26945"
     CDS             complement(1216..1632)
                     /locus_tag="VKJ77_26945"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HMC48981.1"
                     /translation="MRDTALVSMRFDNGAMATAEANFHAVYGYDVRGAVFGSGGMVTM
                     GDVRRSNMTRFGADGVCNATTRLNTDLFQDGYTAQLASFMDAVRSGVVSGPGGEDARA
                     ALAIALASVHSVSERRPVRLAEIVESPPVLAPYGVA"
     gene            complement(1605..1880)
                     /locus_tag="VKJ77_26950"
     CDS             complement(1605..1880)
                     /locus_tag="VKJ77_26950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48982.1"
                     /translation="MPTFGADAHDAIVSGGLGTPQLPRSLTRDPGLADPARVPVWAIF
                     FESLIHDFDTLRFLNPGSEVTEVYAIADALVRRISRSAACGTPRSSA"
BASE COUNT          400 a          614 c          582 g          338 t
ORIGIN      
        1 cggctgtcgt gctatgcgat gtcaagctgc ccggcatgcc gggcacccaa tggctgaacg
       61 agatacgcac catcgacccc gatctgccgg tgatcctggt cacgggccat ggcgacattg
      121 cgatggcggt gaaagccatg cgccagggtg cttacgattt cattgaaaag ccctttccct
      181 cggaacatct ggtcgccgtc gttcgccgcg cagccgaaaa acgttatctg acgctacagg
      241 tgcaggcact gcgcgaccgg atcgaaaacg ctcacggcat ccaggcgatg atgcttggac
      301 gctcggcgca gatgcagcac gtgcgcgaaa cggtgctgac gttggcgggc acctcggctg
      361 acgtagtgat ctacggcgag accggtaccg gcaaggacct ggtagcgcgt tgcctccacg
      421 atcacagcga ccggcgccac gccaactacg tgccgctgaa ctgcggagga ttgtccgagg
      481 cgctggcgga gagcgaactg ttcggccacg aagtgggctc cttcaccggc gcctcgcgcg
      541 tgcgaatcgg caagttcgag catgcgcacg gaggcacgct gtttctcgac gaaatagaga
      601 gcatgccgat ggccgtgcag atcaagttcc tgcgagcgct gcaggaacga agtatcgagc
      661 ggatagggtc gaacaaggcg atccatgtcg attgccgcgt gatcgccgcc gcgaaggacg
      721 acctgaaggt cctgagcgac cagcagaaat tccgttcgga cctgtattac cgcattggtg
      781 tggccttcat cgaactgccc cccttgcgcg agcgccggga agatatcccg ctgctgttcg
      841 agcacttcac gctgttggcg gcgagtcgac accaacgcac ggcccccttg ctcaacggat
      901 ctcaactggc cgagctgatg gcccacgcgt ggcccggcaa cgtgcgtgaa ctgcgcaacg
      961 tcgccgaccg ctttgtactg ggcctgttcc gcgatagcct cacctcggcg acaggcggcc
     1021 acgacatgct gaccggcttg ccgcagcagg tcgagcactt cgagcgcacc atgatcaccg
     1081 aagaactaag acgccatcac ggtgacgtgc ttcgtacggc tacgaccctc gggctaccca
     1141 aacaaacctt atatgacaag cttcgcaagc tgcggatttc caccgatgag ttcaggaaag
     1201 acagctgaaa ccgcatcacg cgacgccata gggcgccaaa acgggcggtg attcgacaat
     1261 ttctgccagg cgcaccggtc gtctttcgct caccgaatgg acgctggcaa gcgcgattgc
     1321 caacgcggcg cgcgcatcct ctccgccggg tccactgacc acaccggatc tcactgcgtc
     1381 catgaaggat gcaagctggg ccgtgtaccc gtcctgaaag aggtcagtgt tcaggcgggt
     1441 ggtggcattg cacacgccat ctgccccgaa ccgcgtcatg ttcgaacgtc gaacatcgcc
     1501 catcgtgacc atcccgccgg aaccgaagac tgcaccccga acgtcgtagc cgtagaccgc
     1561 atggaaattc gcttccgcgg tggccatcgc gccattgtcg aacctcatgc tgacgagcgc
     1621 ggtgtcccgc aagccgcgct ccttgaaatc cggcgaacga gcgcgtccgc gatggcataa
     1681 acctccgtga cttctgagcc tggattcagg aatcgcaatg tgtcgaaatc gtggatcagc
     1741 gattcgaaga aaatcgccca caccgggacg cgcgccggat cggcaagacc cggatcgcgg
     1801 gtcagcgagc gcggcaattg cggggttccc agtccacccg agacaatggc gtcatgagcg
     1861 tcggccccga atgtaggcac cctggtgtcg caaactcatt gatgcgctcc gcgggtcgac
     1921 ctgcatttga ccaa
//
LOCUS       DATGBK010001914         1680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_92128, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001914 DATGBK010000000
VERSION     DATGBK010001914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92128"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..789
                     /locus_tag="VKJ77_26955"
     CDS             <1..789
                     /locus_tag="VKJ77_26955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020065847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau C-terminal
                     domain-containing protein"
                     /protein_id="HMC48983.1"
                     /translation="AASADRSAAPAADDSRFGGAQPNANGNDTNGVAPRNANGTGAIP
                     GKNSGGATPPWEEMPLDDYQPVSSEEGYFMPPDDGSMPAFDSGPDDLRFNDAPAAKPA
                     PRVDARPLPAAVPLDAIGVSGDWPTLAVDLPLKGIAYQLAFNSELTGCDDTSITLVVP
                     VPQYAESAQVAKLKAALTDKLGRPIDVNVNVGPARRTAAAVDAAVRAQRQQEAEQEIT
                     QNPFVQSLIRDFGASIVQGSIKPLASALASINAQDGGQSAASAN"
     gene            1190..1516
                     /locus_tag="VKJ77_26960"
     CDS             1190..1516
                     /locus_tag="VKJ77_26960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006048866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HMC48984.1"
                     /translation="MMKNQLAGLMKQAQQMQDNMKKMQDELALVEVEGQSGAGLVKVT
                     MTCKNDVRRVTIDPSLLADDKDMLEDLVAAAFNDAVRKAEATTQEKMSGMTAGMPMPP
                     GFKLPF"
     gene            1552..>1680
                     /gene="recR"
                     /locus_tag="VKJ77_26965"
     CDS             1552..>1680
                     /gene="recR"
                     /locus_tag="VKJ77_26965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875477.1"
                     /note="involved in a recombinational process of DNA
                     repair, independent of the recBC complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HMC48985.1"
                     /translation="MKQPSALSALVEALRALPGVGPKSAQRMAYHLMQHDRPGAEKL"
BASE COUNT          372 a          525 c          529 g          254 t
ORIGIN      
        1 gctgcttcag ccgatcgaag cgcagcgcct gccgcggacg actccaggtt cggtggcgcg
       61 cagcccaacg cgaacggcaa tgatacaaat ggcgtagcgc cgcgtaacgc taacggcact
      121 ggtgctatcc ccggcaagaa cagcggcggc gcaacccctc cgtgggagga aatgccgctg
      181 gacgactatc aaccggtgtc gtcggaagag ggctatttca tgccgcccga cgacggttcc
      241 atgccggcgt ttgacagcgg ccccgacgac ctgcggttta acgatgcacc cgccgcaaag
      301 ccggcgccca gagtcgatgc acgtccgctg ccggccgctg tcccgctcga tgccattggc
      361 gtgagcggtg actggccaac gcttgccgtg gatttgccgc tgaaggggat cgcttatcaa
      421 ctcgctttca atagcgaact gaccgggtgc gacgacacgt ccatcacgct tgtcgtgccg
      481 gtcccgcaat acgccgaaag cgcacaggtc gcgaagctga aggctgcatt aaccgataag
      541 ctcggccggc cgatcgacgt gaacgtaaat gtcggcccgg cgcgtcgcac ggccgccgcg
      601 gttgacgccg ctgttcgcgc gcagcgccag caggaggcgg agcaggagat tacgcagaac
      661 ccgttcgtgc agtcgctgat tcgcgatttt ggcgcgagta tcgtgcaagg ctcgatcaag
      721 ccgctggcat cggcgctggc atcgattaac gcgcaggatg gcggccagag cgcagcatcg
      781 gcgaactgac gttttttctg tgggcgaaga cagggtggcg cgacagggtg gcaggcggcg
      841 gaacatcgcg gacgctgcac cgcaggcaag cgcgcagtgg tcaagcgctg aaagccgtta
      901 agctacgcag cccgtgagca cgctggaaag cgataaagcc agaccccccg cggagcgaac
      961 gagtcagagc gtccaagcgt cagaggcaaa gagctgggca agcacggagg tggggaaccc
     1021 gcttcatgcc ggacggctcg aacgaacatc gaaacacccg ctgtaaagca cataaagcaa
     1081 gcaaggcaac aaccatcacc cattcacagc cggcgcggac ccgagccgat cccgaaccgc
     1141 gcggcatgca ctcactctct ttaccccgtt tccagcaagg agcccgacca tgatgaagaa
     1201 ccaactcgcc ggcttgatga agcaagctca gcagatgcag gacaacatga agaagatgca
     1261 ggacgaactc gccctggtcg aagtggaagg acagtccggc gcgggtctcg tgaaagtgac
     1321 catgacctgc aagaacgacg tccgccgcgt aacgatcgac ccgagcctgc tcgccgatga
     1381 caaggacatg ctggaagacc tcgttgccgc tgcgttcaac gacgccgtgc gtaaagctga
     1441 agctaccacg caggaaaaga tgagcggcat gacggccggc atgccgatgc cgccgggttt
     1501 caagctgccg ttctaactat ctcaaccctc agagcatagg gttccaagcg catgaaacaa
     1561 ccttccgcct tgtcggcgct cgtcgaagcg ctgcgcgcgc tgccgggcgt gggtcccaag
     1621 tcggcgcagc gcatggccta tcacctgatg cagcacgatc ggccgggcgc tgaaaagctc
//
LOCUS       DATGBK010001915         3180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_161681, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001915 DATGBK010000000
VERSION     DATGBK010001915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3180
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161681"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..656
                     /locus_tag="VKJ77_26970"
     CDS             <1..656
                     /locus_tag="VKJ77_26970"
                     /inference="COORDINATES: protein motif:HMM:NF012946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48986.1"
                     /translation="VLVVGLGNSGAEIAIDLHEHGARVAMAVRGPVNIVPREILGVPV
                     LAISIALSRLPARFADALAAPLVRLTVGDITKLGFRKLPMGPFAQIKARTRIPLIDIG
                     TVKLIREGHIEVLGDIREMGETDVTFDDGRLRAFDAIIAATGFRPRSDFFLEPLLEPQ
                     SDILDVEQPQPRSGGETKSGLHYCGFVVSPTGMLREIGIEARRVAEEITRLEHHSAF"
     gene            841..2484
                     /locus_tag="VKJ77_26975"
     CDS             841..2484
                     /locus_tag="VKJ77_26975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008347698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HMC48987.1"
                     /translation="MSKDMYEEGLNKTAANFAALTPLTFIERAASVYPAMPAIAHGAV
                     RRDWAQTYARTRRLASALSARGIGVGDTVAAMLPNIPEMIEAHFGIPMIGAVLNTLNT
                     RLDASTLAFMLNHGEAKVVLVDREFSAVMREAVANVDHPILVIDVDDSEYAGPGERIG
                     EIEYEALLASGDPEFEWAPPSDEWNAICLNYTSGTTGYPKGVVYHHRGAYTNAVSNIL
                     EWDMPKHAVYLWTLPMFHCNGWCFPWTVAARAGVNVCLRKVDAKTIFDLIRRERVTHY
                     CGAPIVQNLLVNAPDEMKAGITHRVHAMVAGAAPPAAMIEGMERLGFELTHVYGLTEV
                     YGPATVCAQQAQWSTLDIGERARLNARQGVRYHLQDAVTVRDPVTMQEVPQDGETIGE
                     IMFRGNIMMKGYLKNPTATQEAFRGGWFHTGDLAVASLDGYVRIKDRSKDIIISGGEN
                     ISSIEIEDVLYRHPAVLAAAVVAKPDLRWGETPCAFVELKAGATVSAAELIAHCKAHL
                     AGFKVPRAVEFCELPKTSTGKIQKFELRKRAGSVGAIDV"
     gene            2496..>3180
                     /locus_tag="VKJ77_26980"
     CDS             2496..>3180
                     /locus_tag="VKJ77_26980"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HMC48988.1"
                     /translation="MNESVIPDPLVIIDQDIYGVPGAVRITLNRPDAFNALSEALIDA
                     LQRSLDEVAASDARVVVLAGAGRAFCAGHDLKEMRANPSFEYYQALFARCSQMMLTIQ
                     RIPQPVIARVHGVATAAGCQLVAMCDLAVAASTARFAVSGVNLGLFCSTPSVPLSRNL
                     SRKAAFEMLVTGDYIDAQTACERGLVNRVATPERLDDAIRALVASVSEKPRAAIAAGK
                     RLFYRQLEAG"
BASE COUNT          656 a          891 c         1006 g          627 t
ORIGIN      
        1 gcgttctggt cgtcggcctg ggcaacagtg gcgcagagat tgcgatcgat ctccacgaac
       61 acggcgcgcg agtggcaatg gcggtgcgcg ggccggtgaa cattgtccct cgtgagatcc
      121 tcggtgtccc cgtactcgct atctctatcg cgttgagccg ccttcctgcc cgattcgctg
      181 acgcgctggc tgcaccactc gtgcggctca cggtcggcga catcaccaag ctgggtttcc
      241 gcaagctccc gatgggtccc tttgcgcaaa tcaaggcgag gacacgaatc ccgctcatcg
      301 acatcggtac agtcaaactg atccgcgagg gccacatcga ggtgctcgga gacatccgcg
      361 agatgggcga gaccgacgtg acattcgacg atgggcgttt gcgggccttt gatgcaatta
      421 ttgccgcgac ggggtttcgc ccgcgaagcg actttttcct tgagccgctc cttgagccgc
      481 agagcgatat cctcgacgtg gagcaacctc agccgcggag cggcggcgag acaaaatccg
      541 ggctgcatta ctgtgggttt gtcgtctcac cgaccggcat gttgcgcgaa atcggaatcg
      601 aggcgcgacg ggttgcagag gaaatcaccc gcctcgagca ccactcggcg ttttgagggt
      661 tcgcgaggtt cagggacaag ccaagggctt acggcgtctc aggtatcaag agaacgctgt
      721 gctaatgtct gcgtcaatcg cgcgtaatat cgagtgcgaa gggtgggggg cgaactttgc
      781 catccgaaca gtcctgcaaa aagacgaagg cccaaggccg aacgggataa aggagatgcg
      841 atgagcaagg acatgtacga agagggattg aacaaaaccg ctgccaactt cgcagccctg
      901 acacctttga ccttcattga acgtgcggcg tcggtatatc cagccatgcc cgctattgct
      961 cacggcgcgg tacgacgtga ctgggcgcag acctatgcgc gcacccggcg tctagcctca
     1021 gcgttgagcg ccagaggcat tggcgttggc gatacggtcg ctgcgatgct gcctaatatt
     1081 cccgagatga tcgaggctca tttcggtatc ccgatgattg gcgctgtcct caatacgctc
     1141 aacacgcgac tcgatgcaag cacgctcgcg ttcatgctga atcatggcga agcgaaagtg
     1201 gtgctggtcg accgcgaatt ctccgccgtg atgcgcgagg cggtcgcgaa tgtagaccac
     1261 ccgattcttg tcattgacgt cgacgattca gaatatgccg gaccgggcga gcgtattggt
     1321 gaaatagaat atgaagcgct gctggcgagc ggcgatcctg aattcgaatg ggcacctcca
     1381 tccgatgagt ggaatgcgat ctgcctgaac tacacatcgg ggacaactgg atatccgaag
     1441 ggcgtcgtct atcaccatcg cggggcgtat accaacgcgg ttagcaacat ccttgaatgg
     1501 gatatgccaa agcacgcggt gtacctgtgg acgctgccga tgttccattg caacggctgg
     1561 tgcttcccgt ggaccgtggc cgcgcgggcg ggcgtcaacg tatgcctgcg caaggtcgat
     1621 gcgaaaacga tcttcgatct gattcgtcga gagcgagtga cgcattattg cggcgcgccg
     1681 atcgtacaaa acctgctggt caatgcgccc gacgaaatga aagccgggat tacgcaccgt
     1741 gtccatgcaa tggtcgccgg cgcggcgccg cctgcggcaa tgatcgaagg aatggagcga
     1801 ctcggcttcg agctgacgca tgtgtacggc ttgactgagg tttatggccc ggcgaccgtg
     1861 tgtgcgcagc aagctcaatg gagcacgctc gacataggtg aacgcgcccg cctgaatgcg
     1921 cggcagggcg tgcgctatca cttgcaggat gcagtgacag tgcgggatcc tgtgacgatg
     1981 caggaggtgc cgcaagatgg agagacaatc ggcgagatca tgtttcgcgg caacatcatg
     2041 atgaagggtt acctgaaaaa cccgaccgcc acacaggaag cgtttcgcgg cggctggttt
     2101 cacaccgggg acctggcggt cgccagtctg gacggctatg tccgtatcaa ggaccgcagc
     2161 aaggacatca tcatttcggg cggggagaat atttcaagca tcgaaattga agatgtgctg
     2221 tatcgccatc cagcggtcct cgccgccgcc gtcgttgcga agccggatct tcgatggggt
     2281 gagacccctt gcgctttcgt cgagttaaag gcaggtgcaa cggtaagcgc tgcggaatta
     2341 atcgcccatt gcaaagccca tctcgccggt ttcaaggtgc cgcgtgcagt ggagttctgc
     2401 gagttgccga agacatcgac cggcaagatt cagaagttcg aactgcgtaa gcgcgccggg
     2461 tcggtcgggg ccatcgacgt atgacggagg cgaacatgaa cgagagcgta attccagacc
     2521 cgctggtgat tatcgatcag gatatctacg gcgtgcccgg cgcagtgcgg ataacgctga
     2581 accggccaga cgcatttaat gcgttatccg aagcattaat cgacgcgctg caaagaagct
     2641 tggacgaagt ggctgcatcg gatgcgcgcg tcgttgtcct tgcgggcgcg ggccgggcgt
     2701 tttgcgcggg ccacgatctg aaggagatgc gcgccaatcc gtcgttcgag tactaccaag
     2761 cgttgtttgc ccgctgctcg cagatgatgt taaccatcca gcgcataccg cagcccgtga
     2821 tcgcccgcgt gcacggagtc gcgactgcgg caggctgcca actggtcgca atgtgcgatc
     2881 tggcggtggc tgcaagcact gctcgcttcg ccgtgtccgg ggtcaacctg ggattgttct
     2941 gctcgacacc cagtgtgccg ctgtcgcgca atctgtctcg caaggctgca ttcgaaatgc
     3001 ttgtgaccgg cgactatatc gatgcacaaa ccgcgtgtga gcggggcctt gtgaatcgcg
     3061 tcgccacgcc cgaacggctc gacgatgcga ttcgtgcact cgtggcgagc gtcagtgaga
     3121 agccgcgtgc agcgatcgcg gccggtaagc gtctcttcta ccgccaactg gaggcaggca
//
LOCUS       DATGBK010001916         3488 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_161698, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001916 DATGBK010000000
VERSION     DATGBK010001916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161698"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..414)
                     /locus_tag="VKJ77_26985"
     CDS             complement(<1..414)
                     /locus_tag="VKJ77_26985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006413312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HMC48989.1"
                     /translation="MAFNVTLRQSGRQFQVEPDEAVLLAALRQGIGLPYGCKNGACGS
                     CKGTIVSGEVEQAPHSSSALSNDEKTRGMALLCCATAKGDLTVDVREVAGVGDIQVKK
                     LPCRVNALERKATDVIELKLQLPANERLQYLAGQYI"
     gene            474..1610
                     /locus_tag="VKJ77_26990"
     CDS             474..1610
                     /locus_tag="VKJ77_26990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018421568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HMC48990.1"
                     /translation="MIATRKLRRARVLIAGCGDVGLRCVPLLAHRAAAPRVIALSSQP
                     ARAVELRAAGTTPLIANLDERRSLRRLAGLASTVLHLAPPHKTGDDDSRTRALIAALS
                     APRRSVAREATSAVARQRAWRGWFRATFKSGMPAAVRTGVGISVSRHAKAIKRASIVP
                     DRVSSAAARRAQIRLIYASTSGVYGDCGGAWIDETRPVRPDNARAKRRVSAETQLRRA
                     TRRGVLSASIVRIPGIYAGNRLPLARLHKGTPALAPADDVYTNHIHADDLAAILVLAI
                     RRARPQRVVHASDDSDLRMGDYFDLIADAFGLPRAPRVSREQAEAQLEPMMLSFMRES
                     RRLQNTRLRDEMRYVLRYPSIDDFLRQADVHPAVTSVPVVSPAG"
     gene            complement(1576..1752)
                     /locus_tag="VKJ77_26995"
     CDS             complement(1576..1752)
                     /locus_tag="VKJ77_26995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014190639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48991.1"
                     /translation="MAAHMTIAMIAFVAISVLFIVGLLVTMHLRHRYQPNLIGALIGA
                     LLCFILLETLPVLM"
     gene            complement(1886..2755)
                     /locus_tag="VKJ77_27000"
     CDS             complement(1886..2755)
                     /locus_tag="VKJ77_27000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HMC48992.1"
                     /translation="MPAQQKRRIVTFGLASLGAAALAACSPVKLLNATIPSSGYRKTS
                     DISYGSDPRQVLDVYVPAAAASAEPRPVVVFFYGGSWQNGDRGNYLFVAQALTSRGYV
                     AVLPDYRTYPETAFPGFVNDAAAAARWTRDHAHEFGGDPSRLFVMGHSAGAHLAALIA
                     TDPRYLGSQSMSKADLRGVIGLAGPYDFLPIKDRTLLDVFPADTRPESQPINFVTGHE
                     PPMFLAAGTDDTVVDPGNTDRLAAMLRKHGDSVEVKHYDGFGHIRIVSALALPLRGRS
                     TVLADVSAFIDSR"
     gene            complement(2915..>3488)
                     /locus_tag="VKJ77_27005"
     CDS             complement(2915..>3488)
                     /locus_tag="VKJ77_27005"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015003566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0140098 - catalytic activity, acting on
                     RNA [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase"
                     /protein_id="HMC48993.1"
                     /translation="SFEFQVDGATWRYREKAYLALNKPPGYECSRDPQHHLSVFHLLP
                     PQLTERGVQCVGRLDQDTTGLLLLSDDGAFVHAFTSPKRKVPKVYLATTRHPLDDAQL
                     SALRNGVLLHGESQPVAAVSAEQRDERQLELSVLEGKYHQVKRMVAAAGNRVEKLHRE
                     RIGGFGLPADLAEGQWRWLDDADLAKLGHG"
BASE COUNT          680 a         1082 c         1077 g          649 t
ORIGIN      
        1 gatgtattgg ccggccaggt attgcaaccg ttcgttggcc ggcaattgca gcttcagttc
       61 aatgacgtcg gttgccttgc gttccagagc gttcacgcgg caaggcagct tcttgacctg
      121 aatgtcgcca acacctgcca cttcgcgcac gtcgaccgtc aggtcaccct tggccgtcgc
      181 gcagcagagc agggccatgc cgcgggtctt ttcgtcgttg gacaacgctg acgacgaatg
      241 cggcgcctgc tcgacttcgc cggagacaat cgtgcccttg catgaaccac aggctccgtt
      301 cttgcagccg tagggaagtc ctatgccctg acgcagggcg gcgagcagca ccgcttcgtc
      361 gggttctacc tgaaactgcc ggccgctttg ccggagcgta acgttgaaag ccatagatcc
      421 tggatgagtt ggatgaaaca aatgcaaaag ctgtcgcggc tacaatcgac agcatgatcg
      481 ccactcgaaa actacgccgc gcgcgtgtgc tgattgccgg ttgcggcgat gtcggcctgc
      541 gttgcgttcc gcttctcgcc catcgtgccg ccgcgcctcg cgtgatcgca ctctcaagtc
      601 aacccgcgcg tgcggtcgaa ctgcgcgcag ccggcacaac accgttgatt gctaacctgg
      661 acgagcgccg cagcctgcga cggctggccg gtcttgcttc cacggttctg cacctcgcgc
      721 caccccataa aaccggcgac gacgacagca ggacccgcgc gctgattgcc gcgttgagtg
      781 cgccgcgacg gtccgttgcg cgcgaagcga ccagcgctgt tgctcgtcag cgagcgtggc
      841 gcggatggtt tcgcgcgacc ttcaaaagcg gcatgccagc cgccgtcaga acgggcgtcg
      901 ggatcagcgt cagcaggcac gccaaagcca taaaaagagc gtctattgta cccgaccggg
      961 tttcgagcgc cgccgcgcgc cgggcgcaga tccgcctgat ttatgcaagc acgtcggggg
     1021 tttacggcga ttgtggcggg gcgtggatcg atgagacgcg cccggtcagg ccggacaacg
     1081 cgcgcgcgaa acgacgcgtg tcggcggaaa cgcaattgcg gcgcgccacg cggcgcggcg
     1141 tgctgagtgc atcgattgtg cggattcccg ggatctacgc cggcaaccgc ctgccgctgg
     1201 ctcgcctgca caaggggacg ccagcgctgg cgccggccga tgatgtctac accaaccata
     1261 tccacgccga cgatctcgcc gccattctcg tgctcgcgat ccggcgggcg cggccgcagc
     1321 gcgttgtgca tgcatcggac gacagcgact tgcgcatggg ggattatttc gacctgattg
     1381 ccgatgcgtt cggcttgccg cgcgctcccc gtgtttcgcg cgaacaggcc gaggcgcaac
     1441 tcgagccgat gatgctctcg ttcatgcgcg aatcgcgacg tctgcagaac acccggctgc
     1501 gagacgaaat gcgttacgtg ctgcgttatc cgagcatcga cgacttcctg cgtcaggcgg
     1561 acgttcatcc agccgtcaca tcagtaccgg tagtgtctcc agcaggatga agcacagcaa
     1621 ggccccgatc agcgcgccga tcaggttggg ttgatagcga tggcgcagat gcatcgtcac
     1681 cagcaatccg acgataaaca acacgctgat cgccacgaac gcaatcattg caatggtcat
     1741 gtgagcggcc atggtggccc tcctgcttct tttaatagtc gtgtaaggag tatagattta
     1801 cgtcgtaaga aaggcatgct gcagtgcggc gccagcgtgc tgtgttaaca cctattgaat
     1861 tgccttggcg ccgatcacgg tctgtttacc gtgaatcgat gaacgccgat acatccgcga
     1921 gcaccgtcga gcgtccccgc aacggcaacg ccagtgccga aacaatacga atatggccga
     1981 agccgtcgta atgcttgacc tccaccgagt cgccatgttt gcgcagcatg gccgccagac
     2041 gatcggtgtt gccgggatcg acgacggtgt cgtccgtgcc ggctgcgagg aacatcggcg
     2101 gctcatgacc ggtgacgaaa ttgatcggct ggctctcggg gcgcgtgtct gccggaaaca
     2161 catcgagtag cgtgcgatcc ttgatcggca ggaaatcgta aggtccagcc aggccgatca
     2221 ctccgcgcaa gtcggctttc gacatcgatt gagagccgag atagcgtgga tcggtcgcga
     2281 tcagcgcggc aagatgagcg cctgccgaat gacccatgac aaacagccgt gacggatcgc
     2341 cgccgaattc atgcgcgtgg tcacgggtcc agcgcgcggc ggccgccgcg tcattcacaa
     2401 aaccggggaa cgccgtttcc ggatacgtcc ggtagtcggg cagcacggcc acgtaaccgc
     2461 gtgacgtcaa cgcctgtgcg acaaagaggt aattgccgcg atcgccgttc tgccagcttc
     2521 cgccgtagaa aaagacgaca accgggcgcg gctcagcact cgccgccgcg gcgggcacat
     2581 agacatcgag tacctggcgc ggatcgcttc cgtacgagat atctgacgtt ttcctgtaac
     2641 cactcgacgg gatggtggcg ttcaaaagtt tgacgggact acaggcggcg agcgccgcag
     2701 cgccaagact ggcaagaccg aatgtcacga tgcggcgttt ttgttgtgcg ggcataaatg
     2761 tcgaaaagca gggggatgcc acgtcagggg gatgccactt ctacgctcga agcacccgga
     2821 tggatgcagc gcgccgcgtt ggcctgattg agacgttaag cccgccgtga tcgtgactca
     2881 gcgcgctgtc gcacgaatca gacacacgaa gcgctcagcc atgcccgagc ttggcgagat
     2941 ctgcatcgtc cagccagcgc cattgacctt cggccagatc agcgggcaga ccaaacccgc
     3001 caatacgctc ccgatgtaac ttctccacgc ggttcccggc cgctgcgacc atccgcttta
     3061 cctggtgata tttgccttcg agcaccgata gctctagctg tcgctcgtcg cgctgttcgg
     3121 cgctaacagc tgcaacgggc tgtgattcgc catgcagcaa gacgccgttg cgaagtgccg
     3181 agagttgagc atcgtccagt ggatggcgcg tggtcgcgag atacaccttc ggtaccttgc
     3241 gtttgggcga tgtgaacgca tgcacgaacg cgccgtcatc ggagaggagc agaaggccgg
     3301 tcgtgtcctg atccagacgt cccacgcatt gcacgccgcg ctccgtcaac tgcggcggca
     3361 acaggtgaaa gacgctcagg tggtgctgcg gatcacgcga gcactcgtag cccggcggct
     3421 tgttcagtgc cagatacgct ttttccctat accgccatgt cgcgccatcg acttgaaact
     3481 cgaacgaa
//
LOCUS       DATGBK010001917         1544 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_323702, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001917 DATGBK010000000
VERSION     DATGBK010001917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323702"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1511
                     /locus_tag="VKJ77_27010"
     CDS             <1..1511
                     /locus_tag="VKJ77_27010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012348597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HMC48994.1"
                     /translation="GDPDFGGQGLPELLNAATVEMWNSSNMAFALCPLLTAGATEALR
                     QHGSEELKGRYLPKLISGEWTGTMNLTEPQAGSDLAAVRTKAVPDGDHYRLSGQKIFI
                     TWGDHDMTSNVIHLVLARTPDAPEGVRGISLFVVPKFLLNADGSSGQRNDVHCASLEH
                     KLGIHASPTCVMSFGDQGGAIGYLVGQENKGLAHMFTMMNEARQKVGIQGLAIAERAY
                     QQAREYAKDRVQGRLAASKSGGAVAIIHHPDVRRMLMTMKSQVEAMRAFAYVMAADMD
                     RAHRDPDAGERARRQVRVDLLIPVLKAWCTELGVEIASMGVQVHGGMGYIEETGACQF
                     LRDARIAPIYEGTTGIQAADLAGRKLASDQGAGMADLIAEMRQAATELARSTDTQVAS
                     VGTALAAGVQALDDATTWMLHALTTQPDAALASSVDYLMLTGYVCGGWQMGRAALAAS
                     SKSAANEDPDFHRTKLATARFYADKILSRANGLLDAIRSGASSGSSLPIEQF"
BASE COUNT          298 a          451 c          521 g          274 t
ORIGIN      
        1 ccggagatcc ggattttggt ggccaggggc tgcccgagtt gctgaatgcg gccaccgtcg
       61 agatgtggaa ttcgtccaac atggcgttcg cgctgtgtcc gctgttgacg gcaggcgcca
      121 cggaggcgct gaggcagcac ggctcggaag aactcaaggg acgctattta cccaaactca
      181 tcagcggcga gtggacgggc accatgaacc tgaccgagcc gcaagcgggc tcggatctcg
      241 cagccgtgcg cacgaaggcg gtgcctgacg gcgaccacta tcgcctctcc ggccagaaga
      301 tctttatcac gtggggcgat cacgatatga cgagcaacgt cattcatctt gtcctcgcac
      361 gcacgccgga tgcgcccgag ggcgtgcgcg gcatatcgct ctttgtcgtg cccaagttcc
      421 tgctgaatgc cgatggctct tcgggacaac gcaacgacgt tcactgcgcg tcgctcgaac
      481 acaagcttgg cattcacgcg agcccgacct gcgtgatgag cttcggggac cagggtgggg
      541 cgatcggtta tctggtgggg caggagaaca aagggctcgc gcatatgttc acgatgatga
      601 acgaggcgcg ccagaaggta ggtatccagg gactcgcgat tgccgaacgt gcttatcagc
      661 aggctcgcga atacgcgaag gaccgcgtcc aggggcgcct cgcggccagc aaatcaggtg
      721 gcgctgtggc gatcattcac caccctgatg tgcggcgcat gttgatgacg atgaagtccc
      781 aggtcgaagc gatgcgtgct ttcgcgtacg tgatggccgc ggacatggac cgcgcgcacc
      841 gtgaccccga cgccggtgag cgtgcacgtc gccaggtgcg tgtcgatctt ctgatccccg
      901 tgttgaaggc ctggtgcacg gaactgggcg tcgagattgc gtcgatgggt gtacaggtgc
      961 acggcgggat gggctacatc gaagagacgg gagcgtgcca gttcctgcgc gacgcacgaa
     1021 tcgcgccgat ctacgagggt acgacgggca tccaggcggc cgacctcgca ggccgcaagc
     1081 tcgcgtcaga tcaaggcgcg gggatggctg accttattgc ggagatgcgt caggccgcga
     1141 cggagctcgc gcgcagcacg gatacacaag tggcgtcggt gggcacggca ctcgcggccg
     1201 gtgtccaggc gctcgacgat gccactacct ggatgctgca cgcattgacg actcagcccg
     1261 acgcagcgct tgccagttcc gttgactatc tgatgctcac cggctacgtg tgcggcgggt
     1321 ggcagatggg gcgcgccgcg cttgctgcgt caagcaaaag cgcggcgaat gaagacccgg
     1381 atttccatcg cacgaagctc gccactgcgc ggttctacgc cgacaagatc ttgtccagag
     1441 cgaatggact tctggatgcg atccgcagcg gcgcatcgag cgggtcgagc ctcccaatcg
     1501 agcagttttg agcagttctg agcagcgatg caataaaaat gtgg
//
LOCUS       DATGBK010001918         3260 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_254299, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001918 DATGBK010000000
VERSION     DATGBK010001918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254299"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..1237)
                     /locus_tag="VKJ77_27015"
     CDS             complement(176..1237)
                     /locus_tag="VKJ77_27015"
                     /inference="COORDINATES: protein motif:HMM:NF025878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HMC48995.1"
                     /translation="MSTSIRFDSVDFRENDAEEIWHEGLDAIFEIQRPKDPPAPFRAK
                     MESWSLGSMLLMSHVVGGDVEFQRTRRRIATSGVDHYMVHCLLDGTLMSTFGRDIQQV
                     SLGSVVVRDLVVENVGFTRDAPMLTLTIPRQAIDRRTGGALRMHGLSWEAGDPIGVLI
                     ASHMRSLVSVASSMDDEQARVAGEATLDFVAACVLRRAERWEQSGDPRLTPVIRAQAL
                     SFIEGNLADMSLGPARLREILKVSRTALYELFEPMGGVAEYVRARRLDEAMRRLESPL
                     HARDLIGAIACAVGFMSESTFNRAFKERFGCTPTEARRRRAAGALVGATSALDDSSRS
                     RDARGVGFRTAASIRSLGG"
     gene            complement(1731..>3260)
                     /locus_tag="VKJ77_27020"
     CDS             complement(1731..>3260)
                     /locus_tag="VKJ77_27020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014250929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HMC48996.1"
                     /translation="WVPVERLTCLRAIHPVAPMQPLLKPLPGFDEAWTEDDALVEIVR
                     ARLSGFGPLPAPVIARALAVPVSSVALALTRLEAEGYVMRGRFTPGATGATDEEWCER
                     HLLARIHRYTVRRLRREIEPVELQDFMRFLFDWQHLSVDAKADPHGDGHDALMLAIEQ
                     LEGYEAPAVAWEDEILPARLSAYSMTWLDDLCRSGKVVWSRPGVRSRSSGGPVRTTPI
                     VLLPRRNLAAWNPLMQSVQSPEPSSRAQLVFDALTQHGAMFFDELRSDARLLDTELET
                     ALGELVSLGLVNADSFAGLRALLAPAARRNSFGRRPRRGGRGRFIGGMDDAGRWALLR
                     RSENSAAPGTHTDSLEHVAMTLLRRYGVIFWRLLEREADWLPPWRDLLRVFHRLEARG
                     EIRGGRFVAGLSGEQFALPEAVPLLRTMRNRPADSSFIAISAVDPLNLAGTLLPGEKV
                     PALPGNRVLYRDGLPVGAVIAGKTRFLVELDSQSQESVRWHLVRRSFDRMPASPLMTS
                     R"
BASE COUNT          662 a         1040 c          961 g          597 t
ORIGIN      
        1 ccgcagcagc gcccgataaa tatcgttcac gatgcctgcg tacgcgccac gcaatgatgc
       61 cttcgacgca ctctgactcc ctctcattcc gtccgctctt tccacccatt tcgttcagca
      121 cgtcgaggat ttgtttacct gcgattgcat ccgcgcttac atctgctttg cgcgctcagc
      181 cgccgaggct gcggatactc gcagcggtcc tgaagccgac gccgcgcgca tcgcgggagc
      241 ggctgctgtc atccaaagcc gacgtggcgc cgaccagcgc cccggctgcg cgtcgcctgc
      301 gggcttctgt tggcgtgcaa ccgaaacgct ccttgaacgc gcggttgaac gtcgattcgc
      361 tcatgaagcc gaccgcacag gcgatcgcac cgatgagatc gcgcgcatgc aacggcgatt
      421 cgagccggcg catggcttca tcgagccggc gagcgcggac atactccgcc acgccgccca
      481 tcggttcgaa gagttcgtag agcgcagttc gcgacacctt caggatttcg cgcagcctcg
      541 ccgggccgag gctcatgtcc gccagattgc cttcgataaa actcagcgcc tgcgcgcgta
      601 tcaccggcgt cagacgggga tcacccgatt gctcccagcg ctcggcgcgc cgcagcacgc
      661 aggccgcgac gaagtccagc gtagcttcgc ccgccacgcg ggcctgctcg tcgtccatcg
      721 aacttgcgac actcaccagg ctgcgcatat gtgaagcgat cagaacgccg atggggtcgc
      781 cggcctccca ggacaatcca tgcatgcgca acgcgccgcc cgtgcgccgg tcaatggctt
      841 ggcggggaat ggtgagcgtc agcatgggcg cgtcgcgggt gaaaccgacg ttttcaacga
      901 cgaggtcgcg cacgacgacc gacccgagcg acacctgctg gatgtcgcgg ccaaaggtcg
      961 acatcagcgt gccgtcgagc aggcaatgca ccatgtaatg gtcgacgccg gaggtcgcta
     1021 tcctgcggcg cgtacgctga aattcgacgt cgccgcccac gacatgcgac atgagcagca
     1081 ttgaacctaa agaccaactt tccatcttcg cgcgaaacgg cgcaggtgga tctttcgggc
     1141 gctggatctc aaagatggcg tcgagtcctt cgtgccagat ttcctcggcg tcattctcgc
     1201 ggaaatcgac actgtcgaat ctgatggacg tagacatggc gttactcagc ctccataaca
     1261 gggttcgaca tgattttcca gatttgcgag gctcggcttt tggcattacc caacatcgca
     1321 aagtaattaa cggcgtttta gcgataaaac tttagcatgt gtttaaaacg atatgaaggg
     1381 aacggggaat tatcgcgata ccctttcgct ccttgtctgg caggttcaaa cggagcagcg
     1441 gctttacaga cgccgccgtc cgccaatgca cccgggggtc gggcagcatg ctcattgcta
     1501 aaagacgatg aaatcgataa tgcaacccgt gtgaaactat ctgcacgggt tatagttttt
     1561 gacgaaccag gttcgcccca cccacgatca aaactttcat tccacttgca ttaataaggg
     1621 acggatttgt cttgcgcttg cgattcgcca attcgcttac tcgcgtaatg tttagcaaga
     1681 aaatcagcgt tttatcgaaa ttctttctcg tgaaacgcgg ctggttcttt tcagcgactc
     1741 gtcattaacg gagaagccgg cattcggtcg aagctgcgcc ggacaagatg ccagcggacg
     1801 ctttcttgcg attgcgaatc gagttccacc aggaaacgcg ttttccccgc gataaccgcc
     1861 cccaccggca agccatcgcg atatagcact cgattacccg gcagcgccgg cactttctcc
     1921 ccgggcagca aggtgccggc gagattcaag ggatcgactg cgcttatcgc gataaagctg
     1981 ctgtcggcgg gccggttgcg catcgtgcgt aaaagcggca cggcttcggg caacgcgaac
     2041 tgctcacctg acagtcccgc cacgaatcgg ccgccgcgaa tttcaccgcg tgcttccagc
     2101 cgatgaaaga cccgaagcag gtcgcgccac ggcggcagcc agtcggcctc gcgttcgagc
     2161 aagcgccaaa agatcacgcc gtatcggcgc aacagggtca tggcgacatg ttcgagcgag
     2221 tcagtatggg tgccgggcgc ggcactattt tcagaacggc gcagcaacgc ccagcgcccg
     2281 gcatcgtcca tcccaccgat aaaacggccg cggccgccgc gccgtggccg tcggccgaaa
     2341 ctgttgcggc gcgcggccgg cgcgagcaat gcacgcaggc cggcgaaact gtcggcgttc
     2401 accagcccca gcgacaccag ttcgcccagg gcggtttcga gttcagtatc cagcaggcga
     2461 gcgtccgaac gcagttcatc gaagaacatg gcgccatgtt gcgtgagcgc gtcgaacacg
     2521 agctgggcgc gcgacgacgg ctcgggggac tgcaccgatt gcatcagcgg attccacgct
     2581 gccagatttc gacgcggcag caacacgatc ggcgtggtgc gcaccgggcc gcccgaactg
     2641 cgcgatcgaa cacccggacg gctccagaca actttgccgg agcggcatag atcgtcgagc
     2701 caggtcatgg aataagcgct caggcgtgca ggcaggatct cgtcttccca cgcgaccgcg
     2761 ggcgcttcgt agccttcgag ttgttcgatc gcgagcatta gcgcgtcgtg gccgtcgcca
     2821 tgcggatcgg cttttgcgtc cacactgagg tgctgccagt cgaacaggaa acgcatgaaa
     2881 tcctgcaact cgaccggctc gatttcgcgt cgcaaacgcc gcacggtgta tcgatgaata
     2941 cgcgccagca gatgccgttc gcaccactct tcgtctgtcg cacccgtcgc gcccggcgtg
     3001 aagcggccgc gcatgacata accttcagct tcgaggcgcg tcagtgcgag cgctaccgac
     3061 gaaaccggca cggccaaagc gcgagcaata acgggtgccg gcagcggacc aaagccgctc
     3121 aggcgagcgc gcacgatctc gacgagcgca tcgtcttcgg tccacgcttc gtcgaaaccg
     3181 gggagcggct tcaacagcgg ctgcatcggc gcaaccggat gaatcgcgcg caagcatgtc
     3241 aggcgttcga ccgggaccca
//
LOCUS       DATGBK010001919         2342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_323730, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001919 DATGBK010000000
VERSION     DATGBK010001919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323730"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VKJ77_27025"
     CDS             complement(<1..302)
                     /locus_tag="VKJ77_27025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HMC48997.1"
                     /translation="MDGRSGLSEEISGDLRQDFAQCPMFPRWGAATKSQVIVLASESL
                     RNIFRHTTARRPGFCKKSENSQKKMAKSSVSSISPGRKASADSLQCRTGVFIDGTE"
     gene            364..>2342
                     /gene="uvrB"
                     /locus_tag="VKJ77_27030"
     CDS             364..>2342
                     /gene="uvrB"
                     /locus_tag="VKJ77_27030"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006053102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HMC48998.1"
                     /translation="MSDTPLLETAETLDESKFVRFEGSPFQLYQPYPPAGDQPTAIAT
                     LVEGIEDGLSFQTLLGVTGSGKTFTMANVIARMGRPAIVFAPNKTLAAQLYAEFREFF
                     PRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLLERRDVVIV
                     ATVSAIYGIGNPSEYHKMILTLRTGDKMGQRDIIARLIAMQYSRNEADFSRGTFRVRG
                     DTIDIFPAEHAEMAVRVELFDDEIESMQLFDPLTGRVRNKIPRFTVYPSSHYVTPRDT
                     VMRAIETIKLELRERLEFFHKDGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHF
                     SGAAPGEPPPTLVDYLPPDALMLLDESHVLIGQLNGMYNGDRARKENLVDYGFRMPSA
                     LDNRPLKFNEFERKMRQAIFVSATPADYENRTAGQVAEQLVRPTGLVDPDIEVRPARS
                     QVDDVLGEINARVKVHERVLVTVLTKRMAEQLTEFLADHGVKVRYLHSDIDTVERVEI
                     IRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNV
                     NGKAILYGDKVTDSMKRAIGETERRRTKQIAHNLAMGITPRGVTKRIKDIIDGVYNAD
                     DARAELKEAQTRAKFEDMSEKQLSKEIKRLEKQMM"
BASE COUNT          510 a          676 c          686 g          470 t
ORIGIN      
        1 aactccgtcc catcgatgaa aaccccagtt cggcattgta acgaatcggc cgacgctttt
       61 cggcctggcg aaatggaaga aacgctggat ttagccattt ttttctggct attttccgat
      121 tttttacaaa aaccaggacg acgggccgtc gtgtgccgga atatgttcct caagctttca
      181 ctagccaaaa caatcacttg cgatttcgtg gcggcccccc atcttggaaa catcgggcat
      241 tgtgcgaaat cttggcgcaa atcgcctgaa atctcttccg acaatcctga tctgccgtcc
      301 aaacccgctc cagcgcgaac cgctagaatg ggtatttgct ctcggccaag gcacctgatc
      361 ctcatgtccg ataccccgct actcgaaacc gccgaaaccc tcgacgaatc caaattcgtt
      421 cggttcgaag gctctccgtt ccagctttac caaccgtatc cgcccgcagg cgaccagccg
      481 acggcgatcg caacgctcgt ggaagggatt gaggacggcc tgtcgttcca gacactgctc
      541 ggcgtaacgg gctccggcaa gacgttcacc atggcgaacg tgattgcgcg catgggccgg
      601 ccggccattg tgtttgcgcc gaacaagacg cttgccgcgc agctttacgc ggagtttcgc
      661 gagttttttc ctcgcaatgc cgttgaatat ttcgtttctt actacgatta ttaccaaccg
      721 gaagcgtacg tcccgcagcg cgatctgttt atcgagaagg attcgtcgat caacgagcac
      781 atcgagcaaa tgcggctctc ggcgaccaaa agcctgcttg agcgccgtga tgtggtgatc
      841 gtggcgacgg tatcggcgat ctacggtatc ggcaacccgt cggaatatca caagatgatt
      901 ctgacgctgc gcaccggcga caagatgggg cagcgcgaca tcatcgcgcg cctgatcgcg
      961 atgcagtaca gccgcaacga agccgatttt tcacgcggga cgtttcgcgt gcggggcgac
     1021 accatcgaca tcttcccggc ggagcacgcc gaaatggcgg tgcgcgtaga gctgttcgac
     1081 gacgaaattg agtcgatgca actcttcgat ccactcactg gccgcgtgcg caacaagatt
     1141 ccgcgtttca ccgtttatcc gtcgtcgcac tatgtgacgc cgcgcgacac ggttatgcgc
     1201 gccatcgaga cgatcaagct ggagttgcgc gaacggctcg agttcttcca taaggacggc
     1261 aagctggtag aggcgcaacg gctcgaacag cgcacgcgtt tcgatctcga aatgctgcag
     1321 gaactgggct tttgcaaagg catcgagaat tattcgcggc acttttccgg cgcggcgccg
     1381 ggcgagccgc cgccaacgct cgtcgattat ttgccacccg acgcgttgat gctgctcgac
     1441 gagtcgcatg tgctgattgg ccagttgaac ggcatgtaca acggcgaccg ggcgcgcaag
     1501 gagaatctcg tcgattacgg tttccggatg ccatcggcgc tcgacaaccg gccgctcaag
     1561 ttcaatgaat tcgaacgcaa gatgcgccag gcgatcttcg tttcagccac gccggccgat
     1621 tacgaaaacc gcacggcggg gcaggtggcc gaacagcttg tgcggccgac cggcctggtc
     1681 gatcccgata ttgaagtgcg tccggcacgc tcgcaagtgg acgacgtgct cggcgagatc
     1741 aatgcgcgcg tcaaggtgca cgagcgtgtg ctggtgacgg tgctgaccaa gcgcatggcc
     1801 gaacagctga ccgagtttct cgcggatcac ggtgtgaagg tgcgctacct gcatagcgat
     1861 attgatacgg tcgagcgcgt ggaaatcatc cgcgatctgc gtctcggtac gttcgacgtg
     1921 ctggtcggga tcaacttgct gcgagagggg ctggatatcc cggaagtgtc gctggtcgct
     1981 attctcgacg cggacaagga gggtttcttg cgcgccgaac gttcgctgat ccagacgatc
     2041 ggccgggctg cccgtaacgt gaacggcaag gcgattctct acggcgacaa agtcacggac
     2101 tcgatgaaac gtgcgatcgg cgagaccgaa cgccgccgca cgaagcagat tgcgcacaat
     2161 ctcgcgatgg gtatcacgcc gcgtggcgtg accaagcgaa tcaaggacat catcgacggt
     2221 gtctataacg ccgacgacgc ccgcgccgaa ttgaaagaag cgcagacgcg agcgaagttc
     2281 gaggacatgt ccgagaagca gctatcgaag gaaatcaagc gtctcgaaaa gcagatgatg
     2341 ga
//
LOCUS       DATGBK010001920         3681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_184928, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001920 DATGBK010000000
VERSION     DATGBK010001920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 3681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184928"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1316)
                     /locus_tag="VKJ77_27035"
     CDS             complement(<1..1316)
                     /locus_tag="VKJ77_27035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020566578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY family carbohydrate kinase"
                     /protein_id="HMC48999.1"
                     /translation="MQYVLAIDQGTSGTKALLFDAHGKVHSRGFTAVPCAHPRAGFVE
                     QDAEALYRSVLSAVAQCLDRFEGEQTDIGGVAISSQRETVVLWSEEGHAIVPAVSWQC
                     QRSLAICERLREQGMAEVIAGKTGLLIDPYFSGTKLIWLNENDERVSSRVASGSAMFG
                     TVDSWLLYRLTGGASYLTDYTNASRTMLMNLHTLEWDRELIAGFGLDGLRLPELRPSA
                     ADFGATDFEGLLTRPVPVEAMIGDSHAAAVGEGCLRPGLAKATMGTGSSLMMNVGSKP
                     QAPAHGLVSTLCFATSGRVDYAMEGIIISAGSTPAWLKEKLGLFSDFAAAEQAFTDYD
                     NGGVFLIPAFSGIGCPHWKYPGGAQIVGLNFSTSWQHVARAAYESIVYQIKDVITVME
                     QAAQVQLVELFLDGGLVQRPFLLQYLADTLNRPVSTLAMSEISAAGA"
     gene            complement(1355..2437)
                     /locus_tag="VKJ77_27040"
     CDS             complement(1355..2437)
                     /locus_tag="VKJ77_27040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HMC49000.1"
                     /translation="MTTSNRANTSVQSLPAKPDRAAAYWASRVTVSILKLRIFIALFA
                     IVIVFSLATDNFLSTGNMLIMAKHVTIVAILSIGMTLVILTGGIDLSVGSIVGISGMA
                     AGYLLLEGVKIGHHIVFFNPFGVALIACVLGALIGAINGYLITMLNVAPFIATLGMLY
                     VVRGAALLVNNGSTYADLEGNAALGNTGFEFIGNGTILGLSMPVWILIVLAAVTIFVA
                     RKTPLGRRIYAIGGNEQAARFSGIRTNRVKLFVYMFSGFCAAIVGLVITAQLQTAHPL
                     TGQTFELNAIAAVVLGGTALAGGRGTVFGSVVGACVISILGDGMVMCGISDFWQMVIK
                     GLVIIFAVVIDQLQQRLQSRMVSLTA"
     gene            complement(2457..>3681)
                     /locus_tag="VKJ77_27045"
     CDS             complement(2457..>3681)
                     /locus_tag="VKJ77_27045"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006047572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HMC49001.1"
                     /translation="ENIYAGNELTSSGVIRSKAENHQAKILLERLQIPIDPRTRLGNL
                     YVGQQQLVEIAKALSKHIKVLIMDEPTSALSKTEVEILFKIIRQLKEQGVTVIYISHR
                     LEEIMAIGDCITVLRNGRLVAEDEIANVDIPWIIEAMVGSSKKRFAFAQHALGDEVLK
                     VTDLALKRSNGIYAVDHVSFSVCAGEVVGIYGLMGAGRTELLEALLGAQPLAIGQIEL
                     AGKRIERRNIPQRIDAGIALVPEDRQKQGMVQLMSILENMTLSSLGKFVRRFAFGALG
                     RAKQVDAANDVIKRLAIKASSVDAPITSLSGGNMQKVVIGKALLTSPKVLLMDEPTRG
                     IDVGAKEDVYKTISLLAQSGIAVVYATSELDEAMAVSNRVFVMASGKLTAIMGRAEFD
                     SERIVRASTPVTAVV"
BASE COUNT          796 a         1167 c         1022 g          696 t
ORIGIN      
        1 gcgccggccg ctgaaatctc gctcatcgcg agggtgctga cggggcggtt gagggtatcg
       61 gcgaggtatt gcaggaggaa cggccgctgc acaagcccgc cgtccaggaa cagttcgacc
      121 agttgcacct gcgccgcctg ctccatgacg gtgatgacgt ccttgatctg gtagacaatc
      181 gattcgtagg ccgcacgcgc aacatgctgc cacgacgtcg agaaattgag cccgacgatc
      241 tgcgcgccgc ccgggtattt ccaatgcggg cagccgatgc ctgagaacgc gggaatcagg
      301 aagacgccac cgttgtcata atcggtgaag gcctgctccg ctgcggcgaa atcgctgaag
      361 agaccgagct tttccttaag ccatgcaggc gttgaaccgg cactgatgat gatgccttcc
      421 attgcgtagt ccacccgccc ggaggtcgcg aaacataagg tggagaccag tccgtgcgca
      481 ggcgcttgcg gtttggagcc aacgttcatc atcaacgacg agccggttcc catggtcgct
      541 ttcgcgagcc cgggccgcaa gcagccttcg cccacggcgg ccgcatgcga gtcaccgatc
      601 atggcctcga ccggcacggg cctcgtcagc aaaccttcga agtcggtcgc gccgaagtcc
      661 gccgccgacg gtcgcagttc cggcaatctc aatccgtcaa gaccaaaccc ggcgatcaac
      721 tcgcgatccc attcgagcgt atgcaggttc atcagcatcg tgcgtgatgc atttgtatag
      781 tcggtaagat acgacgcgcc gccggtcaac ctatacagca accagctatc gacggtgccg
      841 aacattgccg atcccgaagc aacgcgtgag ctgacccgct cgtcgttctc gttcaaccag
      901 atgagtttgg tccctgagaa ataagggtct atcagcaagc ccgttttccc ggcgatcact
      961 tccgccatgc cttgctcgcg caaacgctcg cagatcgcaa gcgatcgctg gcactgccac
     1021 gagaccgcgg gaacaatggc atgcccctct tcgctccaca gcacgacggt ctcgcgctgg
     1081 ctcgaaatag cgacgccgcc aatgtcagtt tgctcgcctt cgaacctgtc gaggcattgc
     1141 gccaccgcgc tcagcactga gcggtacaaa gcctctgcat cctgctcgac aaaacccgcg
     1201 cgcggatgcg cgcagggcac cgccgtgaaa ccgcgcgaat gcaccttgcc gtgcgcgtcg
     1261 aaaagaagcg ccttcgtgcc gctcgtgccc tggtcgatcg ccaatacgta ttgcataccc
     1321 tttcccgatg aacgcgcttg ctagccaggc gcgcttatgc cgtcagtgaa accatgcgcg
     1381 attgcagtcg ctgctgcaac tgatcgataa ccacggcgaa gataatcaca agacccttga
     1441 tgaccatctg ccagaagtcg ctgatgccgc acatcaccat accgtcgccc agaatgctga
     1501 tcacgcacgc accgactacc gaaccgaata ccgtgccccg gcctcccgcc aacgcggtgc
     1561 cgccgagcac gactgctgcg attgcgttca gctcgaaggt ctgtccggtc aacgggtgcg
     1621 ccgtctgcaa ctgcgcggtg atcacaaggc cgacaatcgc ggcgcaaaat ccggagaaca
     1681 tataaacaaa cagcttcacg cgattcgtgc gaatgcccga gaaacgcgcc gcctgctcgt
     1741 taccgccaat cgcatagatg cgtcgtccga gcggcgtctt gcgggccaca aagatggtga
     1801 cggccgccag cacgatcagg atccagaccg gcatggacag cccgaggatc gtaccgttgc
     1861 cgataaactc aaaacctgtg ttgcccaaag ccgcgttgcc ttccagatcg gcgtaggtgc
     1921 tgccgttgtt gaccagcagc gccgcaccgc gaaccacata caacatgccg agtgtcgcga
     1981 tgaacggcgc gacgtttagc atggtgatca gataaccatt gatcgcacca atcaacgcac
     2041 cgagcacaca ggcaatcaac gccacgccga acggattgaa gaacacgatg tgatgcccaa
     2101 tcttcacgcc ttcgagcagc aggtaacccg ccgccatgcc gctgatcccg acgatcgacc
     2161 caacggacag gtcgattcct ccggtcagga tcaccagggt catgccgatc gagagaatgg
     2221 cgacaatcgt tacgtgcttc gccatgatca gcatgttgcc ggtcgacagg aagttgtcgg
     2281 tggctagcga aaagacgatc acgatcgcaa acagcgcaat gaaaatacgc agcttcagga
     2341 tactgacagt cacgcgcgaa gcccagtaag cggccgcccg atcgggcttg gcaggcagtg
     2401 attgcacgga agtatttgcc ctgttggacg ttgtcatgga tcgaacctca gtcgcttcag
     2461 acgacggccg tgacgggcgt tgacgcgcgc acgatccgtt cgctatcgaa ttcggcgcgt
     2521 cccatgatgg cggtgagctt gccgctcgcc atcacgaaga cgcggttgga gacggccatc
     2581 gcttcgtcga gttccgatgt tgcataaacc acggcgatac ccgattgcgc cagcaggctg
     2641 atggtcttgt agacatcctc tttcgcaccg acgtcaatac cgcgtgtcgg ctcgtccatc
     2701 agcaagacct taggtgatgt caacaatgct ttcccgatga cgaccttctg catgttgccg
     2761 ccggacagcg aagtgatcgg ggcatcgacg gaacttgcct tgatggcaag acgcttgatt
     2821 acgtcgttag cggcatcgac ctgcttcgcg cggcccagcg caccgaaagc gaaacgccga
     2881 acaaatttac ccagactgga aagcgtcatg ttttccaaaa tgctcatgag ctgcaccatg
     2941 ccctgcttct gccgatcttc gggaacgagc gcaatgcccg cgtcaatgcg ctgcggaatg
     3001 ttgcgccgct caatacgctt gcccgccagt tcgatctgcc cgatggcaag cggctgcgcg
     3061 ccaagcagcg cttcgagcaa ctctgtacgc cccgcaccca tcaagccata gataccgacc
     3121 acctcacccg cgcaaacgct gaacgacaca tgatcgactg cgtagattcc attcgagcgc
     3181 ttgagcgcca ggtccgtcac cttcagcacc tcgtcgccaa gtgcgtgctg cgcgaacgca
     3241 aagcgcttct tcgacgaccc caccatggct tcgatgatcc acggaatgtc cacgttggcg
     3301 atctcgtcct cggccacgag tcggccattg cgcagcaccg tgatgcagtc gccgatcgcc
     3361 atgatctctt caaggcggtg cgagatatag atcaccgtca caccctgctc tttcaactga
     3421 cgaatgatct tgaagaggat ctcgacttcg gtcttggaga gcgcagaagt aggctcatcc
     3481 atgatcagca ccttgatgtg cttggacaaa gccttggcga tctcgaccag ttgctgctga
     3541 ccgacataga gattgccgag ccgcgtgcgt gggtcgatcg gaatctgcaa gcgctcaagc
     3601 aggattttcg cctgatggtt ctcggccttg ctgcggatca cgccggaact cgtcagctca
     3661 ttgccggcgt agatgttctc c
//
LOCUS       DATGBK010001921         2261 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Caballeronia sp. isolate SMAG_U9620 k141_185001, whole
            genome shotgun sequence.
ACCESSION   DATGBK010001921 DATGBK010000000
VERSION     DATGBK010001921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37965191
            Sequence Read Archive: SRR5450747
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Caballeronia sp. (soil metagenome)
  ORGANISM  Caballeronia sp.
            Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
            Burkholderiaceae; Caballeronia.
REFERENCE   1  (bases 1 to 2261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/03/2024 08:21:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,412
            CDSs (total)                      :: 5,399
            Genes (coding)                    :: 5,316
            CDSs (with protein)               :: 5,316
            Genes (RNA)                       :: 13
            tRNAs                             :: 12
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 29 of 83
            Pseudo Genes (incomplete)         :: 40 of 83
            Pseudo Genes (internal stop)      :: 27 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Caballeronia sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185001"
                     /isolate="SMAG_U9620"
                     /isolation_source="soil"
                     /db_xref="taxon:1931223"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.6137 N 149.3144 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..539
                     /locus_tag="VKJ77_27050"
     CDS             <1..539
                     /locus_tag="VKJ77_27050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011694590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1445 domain-containing protein"
                     /protein_id="HMC49002.1"
                     /translation="PGYNVYRDGVLCEQPDDIVELWRDDLVVFAIGCSFSFEQMLARE
                     RIPLRHVDEGVNVPMYRTNISNQAAGPFGGKLVVSMRPMSGAHAVRAIQITSRFPSVH
                     GAPVHLGSPAVLGIEDLMQPDYGQSVSIHEHEIPVFWACGVTPQSAIESARLPFAIAH
                     RPGHMLMTDIPNSSLAVL"
     gene            638..1873
                     /locus_tag="VKJ77_27055"
     CDS             638..1873
                     /locus_tag="VKJ77_27055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006161427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HMC49003.1"
                     /translation="MFGWYKHTTPSEKRAFWSCKIGYGLDAMDTQFLSFVIPTLIATW
                     GLSKGEAGLIGTVTLLTSALGGWVAGILSDRIGRVKTLQITILWFAFFTLVCAFAQNY
                     TQLLVARGLMGFGFGGEWTAGAVLIGEVIRPRDRGKAVGMVQAGWAIGWAVAAGLYTL
                     VFSFLPGDIAWRALFALGILPAPFVIMIRRLVDEPEVHKQQKQRELEANDRSSFMEIF
                     GPGIWLTTLRTAILATGTQGGYYAITTWLPTYLKTEQHLSVVGTGGYLAVVIAGSYAG
                     YLCGAFLSDRFGRRLNFIAFSLASMIIALVYTRVPMSNTMLLILGFPLGFFASGIFAG
                     MGAFMTELFPTRIRGSGQGFCYNFGRAVGATFPFLIGFVAQKMSLGIAIGTFAAAAYG
                     VVILAALTLPETRGAKLTS"
     gene            1900..>2261
                     /locus_tag="VKJ77_27060"
     CDS             1900..>2261
                     /locus_tag="VKJ77_27060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018025437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase N-terminal
                     domain-containing protein"
                     /protein_id="HMC49004.1"
                     /translation="MTQAVSTPVPQDRRWQFWIDRGGTFTDIVARRPDGRIVTHKVLS
                     ENPERYRDSAVHGIRELLGVASHEAVPAELIDSVRMGTTVATNALLERKGAPTVLAIT
                     KGFADALRIAYQSRPKLFV"
BASE COUNT          403 a          691 c          687 g          480 t
ORIGIN      
        1 ttcccggcta caacgtgtat cgcgacggcg tgctgtgcga gcagcccgac gatatcgtcg
       61 aactctggcg cgacgatctg gtggtgttcg ccatcggctg ctcgttttca ttcgagcaga
      121 tgctggcgcg tgaacgcatc ccgttgcggc acgttgacga gggtgtcaat gtgccgatgt
      181 accggacgaa catttccaat caagcggccg ggccgttcgg cggcaagctg gtcgtctcca
      241 tgcgtcccat gagtggcgcg catgcagtcc gggccatcca gatcacgagc cggttcccat
      301 cggtgcacgg tgcgcctgtg catctgggca gcccggcggt gctcggcatt gaagacctga
      361 tgcagcccga ctacggtcaa tccgtctcca tccacgagca cgaaataccc gtgttctggg
      421 cgtgcggtgt gacgccgcaa agcgctattg aaagcgcgcg cctgccgttc gccattgcgc
      481 atcggccggg tcacatgctc atgaccgata tccctaactc atcgctcgct gtgctctgag
      541 cgcacgctca cgaaccccgg agaaaaccat gaataccgaa gcacgctatg cgagcacgca
      601 agttgaagcg ctacccgacg aacccgccag cagtggcatg ttcggctggt acaaacacac
      661 gaccccaagc gagaagcgcg cgttctggag ctgcaagata ggctatggac tcgacgccat
      721 ggacacgcag ttcctgagct tcgtgatccc cacgctgata gcaacctggg ggctgagcaa
      781 gggcgaagcc gggttgatcg gcacggtgac gctgctgact tcggcactgg gaggctgggt
      841 cgcgggcatt ctgtcggatc gcatcggccg cgtgaagacg ctgcagatca ccattctctg
      901 gttcgcgttc ttcacgctcg tctgcgcgtt cgcccagaac tacacgcagt tgctggttgc
      961 acgcggcctc atgggcttcg gcttcggtgg cgagtggacg gcaggcgcgg tgttgatcgg
     1021 cgaggtgatc cggccacgcg atcgcggcaa ggcggtaggt atggttcagg cgggctgggc
     1081 gattggctgg gcggtcgccg ccggtctcta tacgctggtg ttttcattcc tgcccggtga
     1141 catcgcgtgg cgcgcactgt tcgcgctcgg gatcttgccc gcgccgttcg tgatcatgat
     1201 ccgccgtctt gttgacgaac ctgaagtcca taaacaacag aagcaacgtg aactggaagc
     1261 caacgaccgc agctcgttca tggagatctt cggcccgggt atctggttga ccacgctgcg
     1321 cacggccatt cttgctaccg gcacgcaagg cggttattac gccatcacca cgtggctgcc
     1381 aacctacctg aagaccgagc agcacctgag cgtcgtcggc acaggcggtt atctcgccgt
     1441 agtgatcgcc ggatcgtatg cggggtacct gtgcggtgca tttcttagcg accgcttcgg
     1501 cagacggctc aatttcatcg cgttttccct ggcttcgatg atcatcgcgc tggtctatac
     1561 ccgcgtgccg atgagcaata ccatgctcct gatcctcggc tttccgcttg gttttttcgc
     1621 atcggggatc tttgccggca tgggcgcatt catgactgaa ctgttcccca ctcggatacg
     1681 gggttccggt cagggctttt gctacaactt cggccgtgca gtcggcgcga cgtttccatt
     1741 cctgatcgga tttgtcgcac aaaaaatgtc cttgggcatc gcgattggaa ccttcgcggc
     1801 agccgcgtat ggcgtggtta ttttggcggc gttgacgttg ccggaaacgc gcggcgccaa
     1861 gctcacctcc taagttatcc ctgtaaccgg accactctca tgactcaggc tgtttccact
     1921 cccgtcccgc aagaccgtcg ctggcaattc tggatcgacc gcggaggtac gttcaccgac
     1981 atcgtcgcgc gccgccccga cggccgcatt gtcacgcaca aggtgttgtc ggagaatccc
     2041 gagcggtatc gcgattccgc cgtgcatggc atccgcgaat tgctaggcgt tgctagccat
     2101 gaagccgtgc cggccgaact gattgatagc gtgcgaatgg gcacgactgt cgcgacgaat
     2161 gcgctgctcg aacgcaaggg cgcgcccact gtactcgcga tcacgaaagg tttcgccgat
     2221 gcactgcgca tcgcatatca aagccggccg aagctgttcg t
//
